Query 005034
Match_columns 718
No_of_seqs 356 out of 2460
Neff 8.5
Searched_HMMs 46136
Date Thu Mar 28 16:58:52 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/005034.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/005034hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 cd04852 Peptidases_S8_3 Peptid 100.0 6.6E-51 1.4E-55 432.0 30.7 306 158-666 1-307 (307)
2 PTZ00262 subtilisin-like prote 100.0 3.2E-51 7E-56 450.4 22.8 290 175-711 306-616 (639)
3 cd07478 Peptidases_S8_CspA-lik 100.0 1.6E-49 3.5E-54 438.2 28.9 415 184-699 1-455 (455)
4 cd05562 Peptidases_S53_like Pe 100.0 1.1E-49 2.4E-54 412.7 24.5 272 183-709 1-275 (275)
5 cd07479 Peptidases_S8_SKI-1_li 100.0 4.9E-49 1.1E-53 405.1 24.7 245 183-669 4-254 (255)
6 cd07497 Peptidases_S8_14 Pepti 100.0 4.3E-49 9.4E-54 414.2 24.4 291 186-665 1-311 (311)
7 cd07475 Peptidases_S8_C5a_Pept 100.0 5.9E-48 1.3E-52 417.1 28.1 315 175-708 2-346 (346)
8 cd07489 Peptidases_S8_5 Peptid 100.0 1.5E-47 3.2E-52 407.5 26.7 297 175-715 5-305 (312)
9 cd07476 Peptidases_S8_thiazoli 100.0 7.9E-47 1.7E-51 390.4 25.1 246 183-672 6-256 (267)
10 cd05561 Peptidases_S8_4 Peptid 100.0 7.9E-47 1.7E-51 385.1 24.4 235 189-699 1-239 (239)
11 cd07483 Peptidases_S8_Subtilis 100.0 2.5E-46 5.3E-51 392.9 25.6 269 187-666 1-291 (291)
12 cd07474 Peptidases_S8_subtilis 100.0 5.7E-46 1.2E-50 392.9 28.3 289 186-706 1-295 (295)
13 cd07493 Peptidases_S8_9 Peptid 100.0 2E-45 4.4E-50 381.2 26.0 247 188-666 1-261 (261)
14 cd07481 Peptidases_S8_Bacillop 100.0 2.9E-45 6.3E-50 380.5 25.8 247 186-666 1-264 (264)
15 cd04857 Peptidases_S8_Tripepti 100.0 2.3E-44 5.1E-49 384.9 26.2 220 266-668 183-412 (412)
16 cd07487 Peptidases_S8_1 Peptid 100.0 4.3E-44 9.4E-49 372.4 26.3 258 186-666 1-264 (264)
17 cd07485 Peptidases_S8_Fervidol 100.0 2.7E-43 5.9E-48 367.6 25.9 263 175-664 2-273 (273)
18 cd04847 Peptidases_S8_Subtilis 100.0 8.8E-44 1.9E-48 374.8 22.1 263 189-666 1-291 (291)
19 cd07494 Peptidases_S8_10 Pepti 100.0 7E-43 1.5E-47 366.5 26.4 161 169-400 8-174 (298)
20 cd04077 Peptidases_S8_PCSK9_Pr 100.0 5E-43 1.1E-47 362.2 23.7 229 183-667 21-255 (255)
21 KOG1153 Subtilisin-related pro 100.0 1.4E-43 3.1E-48 363.1 18.0 292 120-667 137-462 (501)
22 cd07484 Peptidases_S8_Thermita 100.0 1.6E-42 3.4E-47 359.7 24.9 245 168-668 15-259 (260)
23 cd07490 Peptidases_S8_6 Peptid 100.0 1.8E-42 3.8E-47 358.1 24.4 253 188-666 1-254 (254)
24 cd07496 Peptidases_S8_13 Pepti 100.0 2.2E-42 4.7E-47 363.1 25.3 204 263-664 66-285 (285)
25 cd07480 Peptidases_S8_12 Pepti 100.0 1.7E-42 3.7E-47 365.7 23.9 148 183-382 4-172 (297)
26 cd04842 Peptidases_S8_Kp43_pro 100.0 2.1E-42 4.7E-47 365.3 24.3 278 182-666 2-293 (293)
27 cd07498 Peptidases_S8_15 Pepti 100.0 2.7E-42 6E-47 354.0 23.3 241 189-664 1-242 (242)
28 cd04843 Peptidases_S8_11 Pepti 100.0 2.6E-42 5.5E-47 358.1 22.5 247 175-666 7-277 (277)
29 cd07473 Peptidases_S8_Subtilis 100.0 4E-41 8.6E-46 349.1 26.0 253 187-666 2-259 (259)
30 cd07477 Peptidases_S8_Subtilis 100.0 4.6E-41 1E-45 342.0 24.4 227 188-664 1-229 (229)
31 cd07491 Peptidases_S8_7 Peptid 100.0 1.7E-41 3.6E-46 346.4 20.3 161 186-400 2-171 (247)
32 cd07482 Peptidases_S8_Lantibio 100.0 1.2E-40 2.6E-45 352.2 22.6 155 188-382 1-159 (294)
33 PF00082 Peptidase_S8: Subtila 100.0 2.6E-41 5.6E-46 355.0 15.9 276 190-708 1-282 (282)
34 cd07492 Peptidases_S8_8 Peptid 100.0 4.3E-40 9.3E-45 333.1 22.8 151 188-399 1-151 (222)
35 cd04059 Peptidases_S8_Protein_ 100.0 9.5E-40 2.1E-44 345.6 20.9 249 175-666 31-297 (297)
36 cd04848 Peptidases_S8_Autotran 100.0 5.8E-39 1.3E-43 334.2 22.6 247 185-666 1-267 (267)
37 KOG4266 Subtilisin kexin isozy 100.0 3.8E-35 8.3E-40 308.5 12.3 266 180-708 194-465 (1033)
38 cd07488 Peptidases_S8_2 Peptid 100.0 1.6E-33 3.4E-38 286.6 16.9 119 264-401 33-161 (247)
39 cd00306 Peptidases_S8_S53 Pept 100.0 1.5E-31 3.3E-36 273.0 23.3 124 263-400 39-167 (241)
40 KOG1114 Tripeptidyl peptidase 100.0 2.1E-32 4.6E-37 299.9 14.7 241 266-708 308-557 (1304)
41 COG1404 AprE Subtilisin-like s 99.9 1.4E-23 3.1E-28 237.7 23.8 247 183-667 138-398 (508)
42 KOG3526 Subtilisin-like propro 99.9 1.6E-22 3.5E-27 202.9 12.8 157 175-382 153-317 (629)
43 cd04056 Peptidases_S53 Peptida 99.7 1.4E-17 3.1E-22 179.9 15.7 103 295-402 82-198 (361)
44 PF05922 Inhibitor_I9: Peptida 98.6 4.7E-07 1E-11 75.9 9.7 46 115-160 36-81 (82)
45 COG4934 Predicted protease [Po 98.5 1.2E-06 2.7E-11 102.9 14.9 99 295-397 287-395 (1174)
46 KOG3525 Subtilisin-like propro 98.5 6.3E-07 1.4E-11 98.2 10.9 159 175-383 25-189 (431)
47 cd02133 PA_C5a_like PA_C5a_lik 98.4 3.1E-06 6.7E-11 79.2 11.2 103 458-584 40-142 (143)
48 cd02120 PA_subtilisin_like PA_ 98.2 1.8E-05 4E-10 72.2 12.6 117 408-540 2-119 (126)
49 PF02225 PA: PA domain; Inter 97.6 0.00026 5.7E-09 61.7 8.3 75 456-537 24-101 (101)
50 cd02129 PA_hSPPL_like PA_hSPPL 97.6 0.00044 9.5E-09 61.8 9.5 82 450-539 30-114 (120)
51 cd04816 PA_SaNapH_like PA_SaNa 97.4 0.0011 2.4E-08 60.1 9.5 83 450-540 29-115 (122)
52 cd02127 PA_hPAP21_like PA_hPAP 97.3 0.0013 2.7E-08 59.1 9.0 82 450-540 21-109 (118)
53 cd04817 PA_VapT_like PA_VapT_l 97.2 0.0013 2.7E-08 60.6 8.0 74 459-539 50-133 (139)
54 cd02122 PA_GRAIL_like PA _GRAI 97.2 0.0029 6.3E-08 58.5 10.1 85 449-540 43-131 (138)
55 cd04813 PA_1 PA_1: Protease-as 97.2 0.0019 4.2E-08 57.8 8.4 81 449-539 26-111 (117)
56 cd02124 PA_PoS1_like PA_PoS1_l 97.1 0.0035 7.6E-08 57.2 9.5 83 449-540 40-122 (129)
57 cd04818 PA_subtilisin_1 PA_sub 97.1 0.0036 7.7E-08 56.4 9.2 83 449-540 26-111 (118)
58 cd02125 PA_VSR PA_VSR: Proteas 97.0 0.0038 8.1E-08 56.9 9.2 84 450-540 22-120 (127)
59 cd02126 PA_EDEM3_like PA_EDEM3 97.0 0.0036 7.7E-08 57.1 8.7 82 450-540 27-119 (126)
60 cd00538 PA PA: Protease-associ 97.0 0.0035 7.6E-08 56.9 8.7 85 449-540 29-119 (126)
61 cd02132 PA_GO-like PA_GO-like: 96.8 0.0067 1.4E-07 56.3 9.0 80 450-540 48-132 (139)
62 cd02130 PA_ScAPY_like PA_ScAPY 96.8 0.0079 1.7E-07 54.5 9.2 82 450-540 31-115 (122)
63 cd02123 PA_C_RZF_like PA_C-RZF 96.8 0.0064 1.4E-07 57.4 8.7 84 450-540 50-140 (153)
64 cd04819 PA_2 PA_2: Protease-as 95.1 0.14 3E-06 46.7 9.2 74 459-539 38-119 (127)
65 cd02128 PA_TfR PA_TfR: Proteas 90.4 0.41 8.8E-06 46.2 4.8 40 461-506 51-90 (183)
66 cd04815 PA_M28_2 PA_M28_2: Pro 90.3 1.1 2.4E-05 41.2 7.5 81 459-540 33-127 (134)
67 cd04822 PA_M28_1_3 PA_M28_1_3: 86.4 1.5 3.3E-05 41.0 5.7 50 458-507 40-101 (151)
68 cd04814 PA_M28_1 PA_M28_1: Pro 85.9 1.6 3.4E-05 40.5 5.4 49 458-506 40-100 (142)
69 cd02131 PA_hNAALADL2_like PA_h 85.8 1.2 2.6E-05 41.3 4.6 39 462-506 37-75 (153)
70 cd04820 PA_M28_1_1 PA_M28_1_1: 84.3 2.1 4.5E-05 39.5 5.4 49 458-506 42-96 (137)
71 KOG1114 Tripeptidyl peptidase 83.1 0.82 1.8E-05 53.5 2.7 25 183-207 77-101 (1304)
72 KOG2442 Uncharacterized conser 81.7 4.1 8.8E-05 44.6 7.1 67 461-534 91-162 (541)
73 cd02121 PA_GCPII_like PA_GCPII 80.7 2.8 6E-05 41.9 5.2 41 461-507 67-107 (220)
74 KOG4628 Predicted E3 ubiquitin 61.0 20 0.00044 38.2 6.4 80 451-537 63-147 (348)
75 cd04821 PA_M28_1_2 PA_M28_1_2: 45.0 33 0.00072 32.4 4.5 49 458-506 42-103 (157)
76 KOG3920 Uncharacterized conser 39.6 43 0.00093 31.1 4.1 70 449-526 73-151 (193)
77 PRK15019 CsdA-binding activato 38.1 32 0.0007 32.1 3.2 32 627-659 78-109 (147)
78 PF02845 CUE: CUE domain; Int 38.1 34 0.00074 24.2 2.6 24 642-665 5-28 (42)
79 TIGR03391 FeS_syn_CsdE cystein 37.6 34 0.00073 31.6 3.2 33 627-660 73-105 (138)
80 PF08260 Kinin: Insect kinin p 36.5 16 0.00034 16.3 0.4 6 576-581 3-8 (8)
81 PRK09296 cysteine desufuration 34.8 35 0.00076 31.5 2.8 32 627-659 68-99 (138)
82 COG2166 sufE Cysteine desulfur 31.2 47 0.001 30.7 3.0 32 627-659 73-104 (144)
83 PF02657 SufE: Fe-S metabolism 29.7 56 0.0012 29.6 3.3 33 627-660 59-91 (125)
84 smart00546 CUE Domain that may 29.6 78 0.0017 22.4 3.4 25 641-665 5-29 (43)
85 PF13940 Ldr_toxin: Toxin Ldr, 25.6 63 0.0014 21.7 2.0 13 633-645 14-26 (35)
86 PF04255 DUF433: Protein of un 25.4 66 0.0014 24.5 2.5 37 626-662 12-54 (56)
87 PF02601 Exonuc_VII_L: Exonucl 23.3 2.2E+02 0.0047 30.2 6.9 79 299-381 38-120 (319)
88 COG1570 XseA Exonuclease VII, 22.2 1.9E+02 0.0042 32.0 6.2 79 299-381 159-238 (440)
No 1
>cd04852 Peptidases_S8_3 Peptidase S8 family domain, uncharacterized subfamily 3. This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values.
Probab=100.00 E-value=6.6e-51 Score=432.04 Aligned_cols=306 Identities=51% Similarity=0.816 Sum_probs=253.8
Q ss_pred eccccCCCCCccCCCcccccc-cCCCCCCCCCcEEEEEccccCCCCCCCcCCCCCCCCCCCCCCCccccccCCCCCCCCC
Q 005034 158 VRTATTHTPQFLGLPQGAWIQ-EGGYETAGEGVVIGFIDTGIDPTHPSFADDASEHSYPVPSHFSGICEVTRDFPSGSCN 236 (718)
Q Consensus 158 ~~~~~~~~~~~~~~~~~~w~~-~~~~~~~G~gv~VaVIDtGid~~Hp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 236 (718)
++++.+..+.+++++. .|.. .+..+++|+||+|||||||||++||+|.+... .++...|.+.+..+..+....++
T Consensus 1 ~~~~~~~~~~~~~~~~-~~~~~~~~~~~~G~gv~VaViDtGid~~hp~f~~~~~---~~~~~~~~~~~~~~~~~~~~~~~ 76 (307)
T cd04852 1 YQLHTTRSPDFLGLPG-AWGGSLLGAANAGEGIIIGVLDTGIWPEHPSFADVGG---GPYPHTWPGDCVTGEDFNPFSCN 76 (307)
T ss_pred CCccccCCHHHcCCCC-CCCcccccccCCCCccEEEEEeCCCCCCCcCcccCCC---CCCCCCCCCcccCCCCcCccCcC
Confidence 3567788888999887 7876 55668999999999999999999999998766 66777899999988888778899
Q ss_pred ceeeeeeecchhhhhcCccCCCCCCCCCCCCCCCccccccccccCCCCCccccccccCccccccCCceEEEEeecccCCC
Q 005034 237 RKLIGARHFAASAITRGIFNSSQDYASPFDGDGHGSHTASVAAGNHGIPVVVTGHHFGNASGMAPRSHIAVYKALYKSFG 316 (718)
Q Consensus 237 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~~d~~gHGThVAGiiag~~~~~~~~~g~~~~~~~GvAp~A~i~~~kv~~~~~~ 316 (718)
+|+++.++|..+.......+.......+.|..||||||||||+|+...+....+...+.+.||||+|+|+.+|+++....
T Consensus 77 ~ki~g~~~~~~~~~~~~~~~~~~~~~~~~d~~gHGT~VAgiiag~~~~~~~~~~~~~~~~~GvAP~a~l~~~kv~~~~~~ 156 (307)
T cd04852 77 NKLIGARYFSDGYDAYGGFNSDGEYRSPRDYDGHGTHTASTAAGNVVVNASVGGFAFGTASGVAPRARIAVYKVCWPDGG 156 (307)
T ss_pred CeEEEEEEcccchhhccCcccccCCCCCccCCCCchhhhhhhcCCCcccccccccccccEEEECCCCeEEEEEEecCCCC
Confidence 99999999987643322223334456678899999999999999876554444555567789999999999999988667
Q ss_pred CCHHHHHHHHHHHHHCCCCEEEEcCCCCCCCCCCCccccHHHHHHHHHHHCCCEEEEecCCCCCCCCCCCCCCCceEEEe
Q 005034 317 GFAADVVAAIDQAAQDGVDIISLSITPNRRPPGIATFFNPIDMALLSAAKAGIFVVQAAGNTGPSPKSMSSFSPWIFTVG 396 (718)
Q Consensus 317 ~~~~~i~~ai~~a~~~g~~ViN~S~G~~~~~~~~~~~~~~~~~a~~~a~~~GilvV~AAGN~g~~~~~~~~~~~~vitVg 396 (718)
+..++++++|++|++++++|||||||.... ..+.+.++.++..+.++|++||+||||+|......++..|++|+||
T Consensus 157 ~~~~~~~~ai~~a~~~g~~Vin~S~G~~~~----~~~~~~~~~~~~~a~~~gilvV~aAGN~g~~~~~~~~~~~~vi~Vg 232 (307)
T cd04852 157 CFGSDILAAIDQAIADGVDVISYSIGGGSP----DPYEDPIAIAFLHAVEAGIFVAASAGNSGPGASTVPNVAPWVTTVA 232 (307)
T ss_pred ccHHHHHHHHHHHHHcCCCEEEeCCCCCCC----CcccCHHHHHHHHHHhCCCEEEEECCCCCCCCCcccCCCCCeEEEE
Confidence 889999999999999999999999998653 2245778888888999999999999999988778888889999998
Q ss_pred eeccCCceeeeEEeCCCceEeeeccCCCCCceEEEEEcccccCCCCcccCCccccccCCCCCCccCCcCceEEEEEeecc
Q 005034 397 AASHDRIYTNSIILGNSLTISGVGLAPGTDKMYTLISALHALNNNTTTTDDMYVGECQDSSNFNQDLVQGNLLICSYSIR 476 (718)
Q Consensus 397 A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~g~i~~~~~~~~ 476 (718)
+++
T Consensus 233 a~~----------------------------------------------------------------------------- 235 (307)
T cd04852 233 AST----------------------------------------------------------------------------- 235 (307)
T ss_pred ecc-----------------------------------------------------------------------------
Confidence 731
Q ss_pred cccCcchHHHHHHHHHhCCCcEEEEEeCCCccCcccCCCCCCCCeEEecCcchHHHHHHHHhccCCCccccceeeeecee
Q 005034 477 FVLGLSTIKQAFETAKNLSAAGIVFYMDPFVIGFQLNPTPMKMPGIIIPSPDDSKILLQYYNSSLERDEVTKKIIKFGAV 556 (718)
Q Consensus 477 ~~~~~~~~~~~~~~~~~~ga~~vi~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 556 (718)
T Consensus 236 -------------------------------------------------------------------------------- 235 (307)
T cd04852 236 -------------------------------------------------------------------------------- 235 (307)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred EEEecccccccCCCCCceeccccCCCCCCCCCCCCCCCCCCceeccCCceeecccCCCCCCccccCccccccCchhhhhH
Q 005034 557 ACILGGLKANFSNSAPKIMYYSARGPDPEDSFLDDADIMKPNLVAPGNSIWAAWSSLGTDSVEFQGESFAMMSGTSMAAP 636 (718)
Q Consensus 557 ~~~~~~~~~~~~~~~~~~a~fSs~Gpt~~~~~~~~~g~~KPDI~APG~~I~Sa~~~~~~~~~~~~~~~y~~~sGTSmAaP 636 (718)
.||||+|||.+|++++..............|..++|||||||
T Consensus 236 --------------------------------------~~~di~apG~~i~~~~~~~~~~~~~~~~~~~~~~sGTS~AaP 277 (307)
T cd04852 236 --------------------------------------LKPDIAAPGVDILAAWTPEGADPGDARGEDFAFISGTSMASP 277 (307)
T ss_pred --------------------------------------CccceeeccCceeecccCccccccCCCCCcEEEeCcHHHHHH
Confidence 356999999999999864322222224568999999999999
Q ss_pred HHHHHHHHHHHhCCCCCHHHHHHHHHhccc
Q 005034 637 HIAGLAALIKQKFPSFSPSAIASALSTSAT 666 (718)
Q Consensus 637 ~VAG~aALl~q~~p~ls~~~ik~~L~~TA~ 666 (718)
+|||++|||+|++|++++.|||++|++||+
T Consensus 278 ~vaG~aALl~~~~p~~t~~~v~~~L~~tA~ 307 (307)
T cd04852 278 HVAGVAALLKSAHPDWSPAAIKSALMTTAY 307 (307)
T ss_pred HHHHHHHHHHHHCCCCCHHHHHHHHHHhcC
Confidence 999999999999999999999999999995
No 2
>PTZ00262 subtilisin-like protease; Provisional
Probab=100.00 E-value=3.2e-51 Score=450.37 Aligned_cols=290 Identities=21% Similarity=0.258 Sum_probs=212.9
Q ss_pred cccccCCCCCCCCCcEEEEEccccCCCCCCCcCCCCCCCCCCCCCCCccccccCCCCCCCCCcee--eeeeecchhhhhc
Q 005034 175 AWIQEGGYETAGEGVVIGFIDTGIDPTHPSFADDASEHSYPVPSHFSGICEVTRDFPSGSCNRKL--IGARHFAASAITR 252 (718)
Q Consensus 175 ~w~~~~~~~~~G~gv~VaVIDtGid~~Hp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i--~~~~~~~~~~~~~ 252 (718)
+|... .+.+|+||+|||||||||++||||.++.+.+..+.. |..+..+..++.+ +.+++|.+
T Consensus 306 aw~~~--~~~~g~gV~VAVIDTGID~~HPDL~~ni~~n~~el~---------GrdgiDdD~nG~vdd~~G~nfVd----- 369 (639)
T PTZ00262 306 TQELI--EPHEVNDTNICVIDSGIDYNHPDLHDNIDVNVKELH---------GRKGIDDDNNGNVDDEYGANFVN----- 369 (639)
T ss_pred HHHHh--hccCCCCcEEEEEccCCCCCChhhhhhccccccccc---------CccccccccCCcccccccccccC-----
Confidence 55542 247899999999999999999999987641111110 0000000111111 12233432
Q ss_pred CccCCCCCCCCCCCCCCCccccccccccCCCCCccccccccCccccccCCceEEEEeecccCCCCCHHHHHHHHHHHHHC
Q 005034 253 GIFNSSQDYASPFDGDGHGSHTASVAAGNHGIPVVVTGHHFGNASGMAPRSHIAVYKALYKSFGGFAADVVAAIDQAAQD 332 (718)
Q Consensus 253 ~~~~~~~~~~~~~d~~gHGThVAGiiag~~~~~~~~~g~~~~~~~GvAp~A~i~~~kv~~~~~~~~~~~i~~ai~~a~~~ 332 (718)
+...|.|.+||||||||||+|..+++ .++.||||+|+|+++|+++..+.+..+++++||+||+++
T Consensus 370 -------~~~~P~D~~GHGTHVAGIIAA~gnN~--------~Gi~GVAP~AkLi~vKVld~~G~G~~sdI~~AI~yA~~~ 434 (639)
T PTZ00262 370 -------NDGGPMDDNYHGTHVSGIISAIGNNN--------IGIVGVDKRSKLIICKALDSHKLGRLGDMFKCFDYCISR 434 (639)
T ss_pred -------CCCCCCCCCCcchHHHHHHhccccCC--------CceeeeecccccceEEEecCCCCccHHHHHHHHHHHHHC
Confidence 23456789999999999999975433 357899999999999999986778999999999999999
Q ss_pred CCCEEEEcCCCCCCCCCCCccccHHHHHHHHHHHCCCEEEEecCCCCCCCCC--------------CCC----CCCceEE
Q 005034 333 GVDIISLSITPNRRPPGIATFFNPIDMALLSAAKAGIFVVQAAGNTGPSPKS--------------MSS----FSPWIFT 394 (718)
Q Consensus 333 g~~ViN~S~G~~~~~~~~~~~~~~~~~a~~~a~~~GilvV~AAGN~g~~~~~--------------~~~----~~~~vit 394 (718)
|++|||||||+.. +...+.+|+.+|.++|++||+||||+|..... +|+ ..++||+
T Consensus 435 GA~VINmSlG~~~-------~s~~l~~AV~~A~~kGILVVAAAGN~g~~~~s~p~~~~~d~~~~~~YPaa~s~~~~nVIa 507 (639)
T PTZ00262 435 EAHMINGSFSFDE-------YSGIFNESVKYLEEKGILFVVSASNCSHTKESKPDIPKCDLDVNKVYPPILSKKLRNVIT 507 (639)
T ss_pred CCCEEEeccccCC-------ccHHHHHHHHHHHHCCCEEEEeCCCCCCCcccccccccccccccccCChhhhccCCCEEE
Confidence 9999999999743 34678899999999999999999999864321 222 2356666
Q ss_pred EeeeccCCceeeeEEeCCCceEeeeccCCCCCceEEEEEcccccCCCCcccCCccccccCCCCCCccCCcCceEEEEEee
Q 005034 395 VGAASHDRIYTNSIILGNSLTISGVGLAPGTDKMYTLISALHALNNNTTTTDDMYVGECQDSSNFNQDLVQGNLLICSYS 474 (718)
Q Consensus 395 VgA~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~g~i~~~~~~ 474 (718)
|||++.+..
T Consensus 508 VGAv~~d~~----------------------------------------------------------------------- 516 (639)
T PTZ00262 508 VSNLIKDKN----------------------------------------------------------------------- 516 (639)
T ss_pred EeeccCCCC-----------------------------------------------------------------------
Confidence 666432110
Q ss_pred cccccCcchHHHHHHHHHhCCCcEEEEEeCCCccCcccCCCCCCCCeEEecCcchHHHHHHHHhccCCCccccceeeeec
Q 005034 475 IRFVLGLSTIKQAFETAKNLSAAGIVFYMDPFVIGFQLNPTPMKMPGIIIPSPDDSKILLQYYNSSLERDEVTKKIIKFG 554 (718)
Q Consensus 475 ~~~~~~~~~~~~~~~~~~~~ga~~vi~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 554 (718)
T Consensus 517 -------------------------------------------------------------------------------- 516 (639)
T PTZ00262 517 -------------------------------------------------------------------------------- 516 (639)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred eeEEEecccccccCCCCCceeccccCCCCCCCCCCCCCCCCCCceeccCCceeecccCCCCCCccccCccccccCchhhh
Q 005034 555 AVACILGGLKANFSNSAPKIMYYSARGPDPEDSFLDDADIMKPNLVAPGNSIWAAWSSLGTDSVEFQGESFAMMSGTSMA 634 (718)
Q Consensus 555 ~~~~~~~~~~~~~~~~~~~~a~fSs~Gpt~~~~~~~~~g~~KPDI~APG~~I~Sa~~~~~~~~~~~~~~~y~~~sGTSmA 634 (718)
..-..+.||++|. .++||+|||++|+|+. +++.|..++|||||
T Consensus 517 ---------------~~~s~s~~Snyg~------------~~VDIaAPG~dI~St~----------p~g~Y~~~SGTSmA 559 (639)
T PTZ00262 517 ---------------NQYSLSPNSFYSA------------KYCQLAAPGTNIYSTF----------PKNSYRKLNGTSMA 559 (639)
T ss_pred ---------------CcccccccccCCC------------CcceEEeCCCCeeecc----------CCCceeecCCCchh
Confidence 0001234566652 2349999999999998 56789999999999
Q ss_pred hHHHHHHHHHHHHhCCCCCHHHHHHHHHhcccccccCCCccccccccCCCCCCCCCCCCCcccc-ccccccccCCCCe
Q 005034 635 APHIAGLAALIKQKFPSFSPSAIASALSTSATLYDKNGGPIMAQRAYAKPDENQSPATPFDMGS-GFVNATASLDPGL 711 (718)
Q Consensus 635 aP~VAG~aALl~q~~p~ls~~~ik~~L~~TA~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~-G~vn~~~Al~~~l 711 (718)
||||||+||||++++|+|++.||+++|++||.+++... ..+|| |+||+++||+..+
T Consensus 560 AP~VAGvAALLlS~~P~LT~~qV~~iL~~TA~~l~~~~---------------------n~~~wgG~LDa~kAV~~Ai 616 (639)
T PTZ00262 560 APHVAAIASLILSINPSLSYEEVIRILKESIVQLPSLK---------------------NKVKWGGYLDIHHAVNLAI 616 (639)
T ss_pred HHHHHHHHHHHHhhCCCCCHHHHHHHHHHhCccCCCCC---------------------CccccCcEEcHHHHHHHHH
Confidence 99999999999999999999999999999998764322 12333 8999999997654
No 3
>cd07478 Peptidases_S8_CspA-like Peptidase S8 family domain in CspA-like proteins. GSP (germination-specific protease) converts the spore peptidoglycan hydrolase (SleC) precursor to an active enzyme during germination of Clostridium perfringens S40 spores. Analysis of an enzyme fraction of GSP showed that it was composed of a gene cluster containing the processed forms of products of cspA, cspB, and cspC which are positioned in a tandem array just upstream of the 5' end of sleC. The amino acid sequences deduced from the nucleotide sequences of the csp genes showed significant similarity and showed a high degree of homology with those of the catalytic domain and the oxyanion binding region of subtilisin-like serine proteases. Members of the peptidases S8 and S35 clan include endopeptidases, exopeptidases and also a tripeptidyl-peptidase. The S8 family has an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure
Probab=100.00 E-value=1.6e-49 Score=438.22 Aligned_cols=415 Identities=22% Similarity=0.248 Sum_probs=240.2
Q ss_pred CCCCCcEEEEEccccCCCCCCCcCCCCCCCCCCCCCCCccccccCCCCCCCCCceeeeeeecch----hhhhcCccCCCC
Q 005034 184 TAGEGVVIGFIDTGIDPTHPSFADDASEHSYPVPSHFSGICEVTRDFPSGSCNRKLIGARHFAA----SAITRGIFNSSQ 259 (718)
Q Consensus 184 ~~G~gv~VaVIDtGid~~Hp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~----~~~~~~~~~~~~ 259 (718)
++|+||+|||||||||+.||+|...+. .+|+...|++....+.... ...+...+.. ..+.. ....
T Consensus 1 ltG~GV~VaVIDtGId~~hp~F~~~dg--~tRi~~~wDq~~~~~~~~~------~~~~~~~~~~~~i~~~~~~---~~p~ 69 (455)
T cd07478 1 LTGKGVLVGIIDTGIDYLHPEFRNEDG--TTRILYIWDQTIPGGPPPG------GYYGGGEYTEEIINAALAS---DNPY 69 (455)
T ss_pred CCCCceEEEEEECCCCCCCHHHccCCC--CchhHHhhhCcCCCCCCCc------cccCceEEeHHHHHHHHhc---CCcc
Confidence 489999999999999999999998766 6789999999876543211 1112212221 11111 1112
Q ss_pred CCCCCCCCCCCccccccccccCCCCCccccccccCccccccCCceEEEEeecccCCC----------CCHHHHHHHHHHH
Q 005034 260 DYASPFDGDGHGSHTASVAAGNHGIPVVVTGHHFGNASGMAPRSHIAVYKALYKSFG----------GFAADVVAAIDQA 329 (718)
Q Consensus 260 ~~~~~~d~~gHGThVAGiiag~~~~~~~~~g~~~~~~~GvAp~A~i~~~kv~~~~~~----------~~~~~i~~ai~~a 329 (718)
+.....|..||||||||||||+.+++ .++.||||+|+|+++|++..... +..++++.||+|+
T Consensus 70 ~~~~~~D~~GHGThvAGIiag~~~~~--------~~~~GvAp~a~l~~vk~~~~~~~~~~~~~~~~~~~~~~i~~ai~~~ 141 (455)
T cd07478 70 DIVPSRDENGHGTHVAGIAAGNGDNN--------PDFKGVAPEAELIVVKLKQAKKYLREFYEDVPFYQETDIMLAIKYL 141 (455)
T ss_pred ccCcCCCCCCchHHHHHHHhcCCCCC--------CCccccCCCCcEEEEEeecCCCcccccccccccCcHHHHHHHHHHH
Confidence 22345688999999999999986432 45789999999999999987543 5688999999999
Q ss_pred HHC-----CCCEEEEcCCCCCCCCCCCccccHHHHHHHHHHHC-CCEEEEecCCCCCCCCCCCCC-CCceEEEeeeccCC
Q 005034 330 AQD-----GVDIISLSITPNRRPPGIATFFNPIDMALLSAAKA-GIFVVQAAGNTGPSPKSMSSF-SPWIFTVGAASHDR 402 (718)
Q Consensus 330 ~~~-----g~~ViN~S~G~~~~~~~~~~~~~~~~~a~~~a~~~-GilvV~AAGN~g~~~~~~~~~-~~~vitVgA~~~~~ 402 (718)
++. .+.|||||||...++.+ ....++++++.+..+ |++||+||||+|.....+... .+. + .
T Consensus 142 ~~~a~~~~~p~VInlSlG~~~g~~~---g~~~l~~~i~~~~~~~gv~vV~aaGNeg~~~~h~~~~~~~~----~-----~ 209 (455)
T cd07478 142 YDKALELNKPLVINISLGTNFGSHD---GTSLLERYIDAISRLRGIAVVVGAGNEGNTQHHHSGGIVPN----G-----E 209 (455)
T ss_pred HHHHHHhCCCeEEEEccCcCCCCCC---CccHHHHHHHHHHhhCCeEEEEeCCCCCCcCCceeeeeccC----C-----c
Confidence 875 47899999998766532 346788888887776 999999999999854333211 000 0 0
Q ss_pred ceeeeEEeCCCce-EeeeccCCCC-CceEEEEEcccccCCCCcccCCccccccCCCCCCccCCcCceEEEEEeecc----
Q 005034 403 IYTNSIILGNSLT-ISGVGLAPGT-DKMYTLISALHALNNNTTTTDDMYVGECQDSSNFNQDLVQGNLLICSYSIR---- 476 (718)
Q Consensus 403 ~~~~~~~~~~~~~-~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~g~i~~~~~~~~---- 476 (718)
.....+..+.+.. +..+-+.... .....++.+.......+. ..... ...+.+.....++.+..+...
T Consensus 210 ~~~ie~~v~~~~~~~~~eiW~~~~d~~~v~i~sP~Ge~~~~i~----~~~~~---~~~~~~~~~~t~i~v~y~~~~~~~g 282 (455)
T cd07478 210 TKTVELNVGEGEKGFNLEIWGDFPDRFSVSIISPSGESSGRIN----PGIGG---SESYKFVFEGTTVYVYYYLPEPYTG 282 (455)
T ss_pred eEEEEEEECCCCcceEEEEecCCCCEEEEEEECCCCCccCccC----cCCCc---ceeEEEEECCeEEEEEEcCCCCCCC
Confidence 0001111111111 0000000000 000111100000000000 00000 000001111111111111000
Q ss_pred -------cccCcchHHHHHHHHHhCCCcEEEEEeCCCccCcccCCCCCCCCeEEecCcchHHHHHHHHhccCCCccccce
Q 005034 477 -------FVLGLSTIKQAFETAKNLSAAGIVFYMDPFVIGFQLNPTPMKMPGIIIPSPDDSKILLQYYNSSLERDEVTKK 549 (718)
Q Consensus 477 -------~~~~~~~~~~~~~~~~~~ga~~vi~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 549 (718)
+.......|+.........-..+-+|......-..........|...+.. +-....
T Consensus 283 ~~~i~i~~~~~~~GiW~i~~~~~~~~~g~~~~Wlp~~~~~~~~t~f~~~~~~~tit~-----------------Pa~~~~ 345 (455)
T cd07478 283 DQLIFIRFKNIKPGIWKIRLTGVSITDGRFDAWLPSRGLLSENTRFLEPDPYTTLTI-----------------PGTARS 345 (455)
T ss_pred CeEEEEEccCCCccceEEEEEeccCCCceEEEEecCcCcCCCCCEeecCCCCceEec-----------------CCCCCC
Confidence 11111122221111111222223333222110000000000111111111 113456
Q ss_pred eeeeceeEEEecccccccCCCCCceeccccCCCCCCCCCCCCCCCCCCceeccCCceeecccCCCCCCccccCccccccC
Q 005034 550 IIKFGAVACILGGLKANFSNSAPKIMYYSARGPDPEDSFLDDADIMKPNLVAPGNSIWAAWSSLGTDSVEFQGESFAMMS 629 (718)
Q Consensus 550 ~~~~~~~~~~~~~~~~~~~~~~~~~a~fSs~Gpt~~~~~~~~~g~~KPDI~APG~~I~Sa~~~~~~~~~~~~~~~y~~~s 629 (718)
+|+|++.. ...+.++.||||||+.+ +++||||+|||++|+++. +++.|..++
T Consensus 346 vitVga~~-----------~~~~~~~~~Ss~G~~~~-------~~~kpdi~APG~~i~s~~----------~~~~~~~~s 397 (455)
T cd07478 346 VITVGAYN-----------QNNNSIAIFSGRGPTRD-------GRIKPDIAAPGVNILTAS----------PGGGYTTRS 397 (455)
T ss_pred cEEEEEEe-----------CCCCcccCccCCCcCCC-------CCcCceEEecCCCEEEee----------cCCcEEeeC
Confidence 77777753 22346899999999987 799999999999999998 567899999
Q ss_pred chhhhhHHHHHHHHHHHHhC------CCCCHHHHHHHHHhcccccccCCCccccccccCCCCCCCCCCCCCccccc
Q 005034 630 GTSMAAPHIAGLAALIKQKF------PSFSPSAIASALSTSATLYDKNGGPIMAQRAYAKPDENQSPATPFDMGSG 699 (718)
Q Consensus 630 GTSmAaP~VAG~aALl~q~~------p~ls~~~ik~~L~~TA~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~G 699 (718)
|||||||||||++|||+|++ |.+++++||++|++||+++.. ..+++++||||
T Consensus 398 GTS~Aap~vaG~aALl~~~~~~~~~~p~~~~~~ik~~L~~tA~~~~~------------------~~~pn~~~GyG 455 (455)
T cd07478 398 GTSVAAAIVAGACALLLQWGIVRGNDPYLYGEKIKTYLIRGARRRPG------------------DEYPNPEWGYG 455 (455)
T ss_pred cHHHHHHHHHHHHHHHHHhchhccCCCCCCHHHHHHHHHHhCccCCC------------------CCCCCCCCCCC
Confidence 99999999999999999975 557999999999999998752 23568899998
No 4
>cd05562 Peptidases_S53_like Peptidase domain in the S53 family. Members of the peptidase S53 (sedolisin) family include endopeptidases and exopeptidases. The S53 family contains a catalytic triad Glu/Asp/Ser with an additional acidic residue Asp in the oxyanion hole, similar to that of Asn in subtilisin. The stability of these enzymes may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. Characterized sedolisins include Kumamolisin, an extracellular calcium-dependent thermostable endopeptidase from Bacillus. The enzyme is synthesized with a 188 amino acid N-terminal preprotein region which is cleaved after the extraction into the extracellular space with low pH. One kumamolysin paralog, kumamolisin-As, is believed to be a collagenase. TPP1 is a serine protease that functi
Probab=100.00 E-value=1.1e-49 Score=412.66 Aligned_cols=272 Identities=28% Similarity=0.310 Sum_probs=204.0
Q ss_pred CCCCCCcEEEEEccccCCCCCCCcCCCCCCCCCCCCCCCccccccCCCCCCCCCceeeeeeecchhhhhcCccCCCCCCC
Q 005034 183 ETAGEGVVIGFIDTGIDPTHPSFADDASEHSYPVPSHFSGICEVTRDFPSGSCNRKLIGARHFAASAITRGIFNSSQDYA 262 (718)
Q Consensus 183 ~~~G~gv~VaVIDtGid~~Hp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~ 262 (718)
|++|+||+|||||||||.+||++.+... . .+.+...+.. ...
T Consensus 1 g~tG~gv~vaviDtGvd~~~~~~~~~~~---~-----------------------~l~~~~~~~~------------~~~ 42 (275)
T cd05562 1 GVDGTGIKIGVISDGFDGLGDAADDQAS---G-----------------------DLPGNVNVLG------------DLD 42 (275)
T ss_pred CCCCCceEEEEEeCCccccccccccccC---C-----------------------CCCcceeecc------------ccC
Confidence 5899999999999999999885432211 0 0000000000 012
Q ss_pred CCCCCCCCccccccccccCCCCCccccccccCccccccCCceEEEEeecccCCCCCHHHHHHHHHHHHHCCCCEEEEcCC
Q 005034 263 SPFDGDGHGSHTASVAAGNHGIPVVVTGHHFGNASGMAPRSHIAVYKALYKSFGGFAADVVAAIDQAAQDGVDIISLSIT 342 (718)
Q Consensus 263 ~~~d~~gHGThVAGiiag~~~~~~~~~g~~~~~~~GvAp~A~i~~~kv~~~~~~~~~~~i~~ai~~a~~~g~~ViN~S~G 342 (718)
...|..+|||||||||+ ||||+|+|+.+++.. ..+++++||+|++++|++|||||||
T Consensus 43 ~~~d~~gHGT~vAgii~------------------GvAP~a~l~~~~~~~-----~~~~i~~ai~~a~~~g~~Vin~S~g 99 (275)
T cd05562 43 GGSGGGDEGRAMLEIIH------------------DIAPGAELAFHTAGG-----GELDFAAAIRALAAAGADIIVDDIG 99 (275)
T ss_pred CCCCCCchHHHHHHHHh------------------ccCCCCEEEEEecCC-----CHHHHHHHHHHHHHcCCCEEEeccc
Confidence 34578899999999994 899999999988643 4789999999999999999999999
Q ss_pred CCCCCCCCCccccHHHHHHHHHHHC-CCEEEEecCCCCCCC-CCCCCCCCceEEEeeeccCCceeeeEEeCCCceEeeec
Q 005034 343 PNRRPPGIATFFNPIDMALLSAAKA-GIFVVQAAGNTGPSP-KSMSSFSPWIFTVGAASHDRIYTNSIILGNSLTISGVG 420 (718)
Q Consensus 343 ~~~~~~~~~~~~~~~~~a~~~a~~~-GilvV~AAGN~g~~~-~~~~~~~~~vitVgA~~~~~~~~~~~~~~~~~~~~~~~ 420 (718)
....+. .....+.++++++.++ |++||+||||+|... ..+|+..++||+|||++.+.....+...+.
T Consensus 100 ~~~~~~---~~~~~~~~ai~~a~~~~GvlvVaAAGN~g~~~~~~~Pa~~~~vitVgA~~~~~~~~~~s~~~~-------- 168 (275)
T cd05562 100 YLNEPF---FQDGPIAQAVDEVVASPGVLYFSSAGNDGQSGSIFGHAAAPGAIAVGAVDYGNTPAFGSDPAP-------- 168 (275)
T ss_pred ccCCCc---ccCCHHHHHHHHHHHcCCcEEEEeCCCCCCCCCccCCCCCCCeEEEEeeccCCCccccccccc--------
Confidence 754331 1224677888888887 999999999999854 345788999999999875543111000000
Q ss_pred cCCCCCceEEEEEcccccCCCCcccCCccccccCCCCCCccCCcCceEEEEEeecccccCcchHHHHHHHHHhCCCcEEE
Q 005034 421 LAPGTDKMYTLISALHALNNNTTTTDDMYVGECQDSSNFNQDLVQGNLLICSYSIRFVLGLSTIKQAFETAKNLSAAGIV 500 (718)
Q Consensus 421 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~g~i~~~~~~~~~~~~~~~~~~~~~~~~~~ga~~vi 500 (718)
T Consensus 169 -------------------------------------------------------------------------------- 168 (275)
T cd05562 169 -------------------------------------------------------------------------------- 168 (275)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred EEeCCCccCcccCCCCCCCCeEEecCcchHHHHHHHHhccCCCccccceeeeeceeEEEecccccccCCCCCceeccccC
Q 005034 501 FYMDPFVIGFQLNPTPMKMPGIIIPSPDDSKILLQYYNSSLERDEVTKKIIKFGAVACILGGLKANFSNSAPKIMYYSAR 580 (718)
Q Consensus 501 ~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~fSs~ 580 (718)
.......+.|+++
T Consensus 169 -------------------------------------------------------------------~~~~s~~~~~~~~ 181 (275)
T cd05562 169 -------------------------------------------------------------------GGTPSSFDPVGIR 181 (275)
T ss_pred -------------------------------------------------------------------CCCcccccCCccc
Confidence 0000123557888
Q ss_pred CCCCCCCCCCCCCCCCCceeccCC-ceeecccCCCCCCccccCccccccCchhhhhHHHHHHHHHHHHhCCCCCHHHHHH
Q 005034 581 GPDPEDSFLDDADIMKPNLVAPGN-SIWAAWSSLGTDSVEFQGESFAMMSGTSMAAPHIAGLAALIKQKFPSFSPSAIAS 659 (718)
Q Consensus 581 Gpt~~~~~~~~~g~~KPDI~APG~-~I~Sa~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~q~~p~ls~~~ik~ 659 (718)
||+.+ ++.||||+|||+ ++.++. .++.|..++|||||||||||++|||+|++|+++++|||+
T Consensus 182 ~p~~~-------~~~~~di~Apgg~~~~~~~----------~~~~~~~~sGTS~AaP~VaG~aALl~~~~p~lt~~~v~~ 244 (275)
T cd05562 182 LPTPE-------VRQKPDVTAPDGVNGTVDG----------DGDGPPNFFGTSAAAPHAAGVAALVLSANPGLTPADIRD 244 (275)
T ss_pred CcCCC-------CCcCCeEEcCCcccccCCC----------cCCceeecccchHHHHHHHHHHHHHHHhCCCCCHHHHHH
Confidence 99876 689999999976 445544 456899999999999999999999999999999999999
Q ss_pred HHHhcccccccCCCccccccccCCCCCCCCCCCCCccccccccccccCCC
Q 005034 660 ALSTSATLYDKNGGPIMAQRAYAKPDENQSPATPFDMGSGFVNATASLDP 709 (718)
Q Consensus 660 ~L~~TA~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~G~vn~~~Al~~ 709 (718)
+|++||+++...+ .+..||||+||+.+||++
T Consensus 245 ~L~~tA~~~~~~g-------------------~d~~~G~G~vda~~Av~~ 275 (275)
T cd05562 245 ALRSTALDMGEPG-------------------YDNASGSGLVDADRAVAA 275 (275)
T ss_pred HHHHhCcccCCCC-------------------CCCCcCcCcccHHHHhhC
Confidence 9999999875433 267899999999999974
No 5
>cd07479 Peptidases_S8_SKI-1_like Peptidase S8 family domain in SKI-1-like proteins. SKI-1 (type I membrane-bound subtilisin-kexin-isoenzyme) proteins are secretory Ca2+-dependent serine proteinases cleave at nonbasic residues: Thr, Leu, and Lys. SKI-1s play a critical role in the regulation of the synthesis and metabolism of cholesterol and fatty acid metabolism. Members of the peptidases S8 and S35 clan include endopeptidases, exopeptidases and also a tripeptidyl-peptidase. The S8 family has an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The S53 family contains a catalytic triad Glu/Asp/Ser. The stability of these enzymes may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme tem
Probab=100.00 E-value=4.9e-49 Score=405.09 Aligned_cols=245 Identities=26% Similarity=0.386 Sum_probs=197.4
Q ss_pred CCCCCCcEEEEEccccCCCCCCCcCCCCCCCCCCCCCCCccccccCCCCCCCCCceeeeeeecchhhhhcCccCCCCCCC
Q 005034 183 ETAGEGVVIGFIDTGIDPTHPSFADDASEHSYPVPSHFSGICEVTRDFPSGSCNRKLIGARHFAASAITRGIFNSSQDYA 262 (718)
Q Consensus 183 ~~~G~gv~VaVIDtGid~~Hp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~ 262 (718)
+++|+||+|||||||||.+||+|.+... ...| .. ..
T Consensus 4 g~tG~gv~VaviDsGv~~~hp~l~~~~~------~~~~-------------------------~~-------------~~ 39 (255)
T cd07479 4 GYTGAGVKVAVFDTGLAKDHPHFRNVKE------RTNW-------------------------TN-------------EK 39 (255)
T ss_pred CCCCCCCEEEEEeCCCCCCCcchhcccc------cccc-------------------------CC-------------CC
Confidence 8999999999999999999999985321 0011 10 12
Q ss_pred CCCCCCCCccccccccccCCCCCccccccccCccccccCCceEEEEeecccCCCCCHHHHHHHHHHHHHCCCCEEEEcCC
Q 005034 263 SPFDGDGHGSHTASVAAGNHGIPVVVTGHHFGNASGMAPRSHIAVYKALYKSFGGFAADVVAAIDQAAQDGVDIISLSIT 342 (718)
Q Consensus 263 ~~~d~~gHGThVAGiiag~~~~~~~~~g~~~~~~~GvAp~A~i~~~kv~~~~~~~~~~~i~~ai~~a~~~g~~ViN~S~G 342 (718)
...|..+|||||||||+|+.+ .+.||||+|+|+.+|++.++..+..+.++++|+|+++++++|||||||
T Consensus 40 ~~~d~~gHGT~VAGiIa~~~~-----------~~~GvAp~a~l~~~~v~~~~~~~~~~~~~~a~~~a~~~~~~Vin~S~G 108 (255)
T cd07479 40 TLDDGLGHGTFVAGVIASSRE-----------QCLGFAPDAEIYIFRVFTNNQVSYTSWFLDAFNYAILTKIDVLNLSIG 108 (255)
T ss_pred CCCCCCCcHHHHHHHHHccCC-----------CceeECCCCEEEEEEeecCCCCchHHHHHHHHHhhhhcCCCEEEeecc
Confidence 334778999999999998752 357999999999999998766677888999999999999999999999
Q ss_pred CCCCCCCCCccccHHHHHHHHHHHCCCEEEEecCCCCCCCC--CCCCCCCceEEEeeeccCCceeeeEEeCCCceEeeec
Q 005034 343 PNRRPPGIATFFNPIDMALLSAAKAGIFVVQAAGNTGPSPK--SMSSFSPWIFTVGAASHDRIYTNSIILGNSLTISGVG 420 (718)
Q Consensus 343 ~~~~~~~~~~~~~~~~~a~~~a~~~GilvV~AAGN~g~~~~--~~~~~~~~vitVgA~~~~~~~~~~~~~~~~~~~~~~~ 420 (718)
.... ....+.+++..+.++|++||+||||+|.... .+|+..++||+|||++.+
T Consensus 109 ~~~~------~~~~~~~~~~~~~~~gi~vV~aaGN~g~~~~~~~~Pa~~~~vi~Vga~~~~------------------- 163 (255)
T cd07479 109 GPDF------MDKPFVDKVWELTANNIIMVSAIGNDGPLYGTLNNPADQMDVIGVGGIDFD------------------- 163 (255)
T ss_pred CCCC------CCcHHHHHHHHHHHCCcEEEEEcCCCCCCcccccCcccCCCceEEeeeccC-------------------
Confidence 7532 2345666777888999999999999997533 357778999999986432
Q ss_pred cCCCCCceEEEEEcccccCCCCcccCCccccccCCCCCCccCCcCceEEEEEeecccccCcchHHHHHHHHHhCCCcEEE
Q 005034 421 LAPGTDKMYTLISALHALNNNTTTTDDMYVGECQDSSNFNQDLVQGNLLICSYSIRFVLGLSTIKQAFETAKNLSAAGIV 500 (718)
Q Consensus 421 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~g~i~~~~~~~~~~~~~~~~~~~~~~~~~~ga~~vi 500 (718)
T Consensus 164 -------------------------------------------------------------------------------- 163 (255)
T cd07479 164 -------------------------------------------------------------------------------- 163 (255)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred EEeCCCccCcccCCCCCCCCeEEecCcchHHHHHHHHhccCCCccccceeeeeceeEEEecccccccCCCCCceeccccC
Q 005034 501 FYMDPFVIGFQLNPTPMKMPGIIIPSPDDSKILLQYYNSSLERDEVTKKIIKFGAVACILGGLKANFSNSAPKIMYYSAR 580 (718)
Q Consensus 501 ~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~fSs~ 580 (718)
+.++.|||+
T Consensus 164 -----------------------------------------------------------------------~~~~~~S~~ 172 (255)
T cd07479 164 -----------------------------------------------------------------------DNIARFSSR 172 (255)
T ss_pred -----------------------------------------------------------------------CccccccCC
Confidence 235778999
Q ss_pred CCCCCCCCCCCCCCCCCceeccCCceeecccCCCCCCccccCccccccCchhhhhHHHHHHHHHHHHhCC----CCCHHH
Q 005034 581 GPDPEDSFLDDADIMKPNLVAPGNSIWAAWSSLGTDSVEFQGESFAMMSGTSMAAPHIAGLAALIKQKFP----SFSPSA 656 (718)
Q Consensus 581 Gpt~~~~~~~~~g~~KPDI~APG~~I~Sa~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~q~~p----~ls~~~ 656 (718)
|++.... ....|++||||+|||.+|+++. .++.|..++|||||||||||++|||+|++| .++|.+
T Consensus 173 g~~~~~~-p~~~g~~~~di~apG~~i~~~~----------~~~~~~~~sGTS~AaP~VaG~aAll~s~~p~~~~~~~p~~ 241 (255)
T cd07479 173 GMTTWEL-PGGYGRVKPDIVTYGSGVYGSK----------LKGGCRALSGTSVASPVVAGAVALLLSTVPEKRDLINPAS 241 (255)
T ss_pred CCCcccc-cCCCCCcCccEEecCCCeeccc----------cCCCeEEeccHHHHHHHHHHHHHHHHHhCccccCCCCHHH
Confidence 9653100 0112789999999999999876 455788999999999999999999999999 799999
Q ss_pred HHHHHHhcccccc
Q 005034 657 IASALSTSATLYD 669 (718)
Q Consensus 657 ik~~L~~TA~~~~ 669 (718)
||++|++||++++
T Consensus 242 vk~~L~~sA~~~~ 254 (255)
T cd07479 242 MKQALIESATRLP 254 (255)
T ss_pred HHHHHHhhcccCC
Confidence 9999999999864
No 6
>cd07497 Peptidases_S8_14 Peptidase S8 family domain, uncharacterized subfamily 14. This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values.
Probab=100.00 E-value=4.3e-49 Score=414.23 Aligned_cols=291 Identities=27% Similarity=0.327 Sum_probs=191.6
Q ss_pred CCCcEEEEEccccCCCCCCCcCCCCCCCCCCCCCCCccccccCCCCCCCCCceeeeeeecchhhhhcCccCCCCCCCCCC
Q 005034 186 GEGVVIGFIDTGIDPTHPSFADDASEHSYPVPSHFSGICEVTRDFPSGSCNRKLIGARHFAASAITRGIFNSSQDYASPF 265 (718)
Q Consensus 186 G~gv~VaVIDtGid~~Hp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~ 265 (718)
|+||+|||||||||.+||||.++.. . .|...++ ..+.+....++..+ ....+.
T Consensus 1 G~gV~VaViDTGid~~HPdl~~~~~---~----~~~~~~d---------~~~~~~~g~d~~~~-----------~~~~~~ 53 (311)
T cd07497 1 GEGVVIAIVDTGVDYSHPDLDIYGN---F----SWKLKFD---------YKAYLLPGMDKWGG-----------FYVIMY 53 (311)
T ss_pred CCCeEEEEEeCCcCCCChhHhcccC---C----CcccccC---------cCCCccCCcCCCCC-----------ccCCCC
Confidence 7999999999999999999986532 0 1100000 00011111111111 113457
Q ss_pred CCCCCccccccccccCCCCCcccccc-ccCccccccCCceEEEEeecccCCCCCHHHHH-------HHHHHHH--HCCCC
Q 005034 266 DGDGHGSHTASVAAGNHGIPVVVTGH-HFGNASGMAPRSHIAVYKALYKSFGGFAADVV-------AAIDQAA--QDGVD 335 (718)
Q Consensus 266 d~~gHGThVAGiiag~~~~~~~~~g~-~~~~~~GvAp~A~i~~~kv~~~~~~~~~~~i~-------~ai~~a~--~~g~~ 335 (718)
|.+||||||||||+|..+......++ ...++.||||+|+|+.+|++..........+. .+++|.. +++++
T Consensus 54 D~~gHGThvAGiiag~~~~~~~~~~~~~~~g~~GVAP~A~l~~vkvl~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~ 133 (311)
T cd07497 54 DFFSHGTSCASVAAGRGKMEYNLYGYTGKFLIRGIAPDAKIAAVKALWFGDVIYAWLWTAGFDPVDRKLSWIYTGGPRVD 133 (311)
T ss_pred CccccchhHHHHHhccCcccccccccccccceeeeCCCCEEEEEEEEecCCcchhhhhhhccchhhhhhhhhhccCCCce
Confidence 89999999999999985322111000 11357899999999999999753333222222 2444443 67999
Q ss_pred EEEEcCCCCCCCCC-CCccccHHHHHHHHH-HHCCCEEEEecCCCCCCC--CCCCCCCCceEEEeeeccCCceeeeEEeC
Q 005034 336 IISLSITPNRRPPG-IATFFNPIDMALLSA-AKAGIFVVQAAGNTGPSP--KSMSSFSPWIFTVGAASHDRIYTNSIILG 411 (718)
Q Consensus 336 ViN~S~G~~~~~~~-~~~~~~~~~~a~~~a-~~~GilvV~AAGN~g~~~--~~~~~~~~~vitVgA~~~~~~~~~~~~~~ 411 (718)
|||||||....... ...-.+....+++.+ .++|++||+||||+|... ...|+.++++|+|||++..+..+.+..
T Consensus 134 VIN~S~G~~~~~~~~~~~g~~~~~~~~d~~~~~~Gv~vV~AAGN~g~~~~~~~~Pa~~~~vitVgA~~~~~~~~~~~~-- 211 (311)
T cd07497 134 VISNSWGISNFAYTGYAPGLDISSLVIDALVTYTGVPIVSAAGNGGPGYGTITAPGAASLAISVGAATNFDYRPFYLF-- 211 (311)
T ss_pred EEEecCCcCCCCccccccCcCHHHHHHHHHHhcCCCEEEEeCCCCCCCCccccCccCCCCeEEEEeccCCcccchhhh--
Confidence 99999997542210 000112233333332 489999999999999853 456778999999999864322110000
Q ss_pred CCceEeeeccCCCCCceEEEEEcccccCCCCcccCCccccccCCCCCCccCCcCceEEEEEeecccccCcchHHHHHHHH
Q 005034 412 NSLTISGVGLAPGTDKMYTLISALHALNNNTTTTDDMYVGECQDSSNFNQDLVQGNLLICSYSIRFVLGLSTIKQAFETA 491 (718)
Q Consensus 412 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~g~i~~~~~~~~~~~~~~~~~~~~~~~ 491 (718)
..
T Consensus 212 ---------------------------------------~~--------------------------------------- 213 (311)
T cd07497 212 ---------------------------------------GY--------------------------------------- 213 (311)
T ss_pred ---------------------------------------cc---------------------------------------
Confidence 00
Q ss_pred HhCCCcEEEEEeCCCccCcccCCCCCCCCeEEecCcchHHHHHHHHhccCCCccccceeeeeceeEEEecccccccCCCC
Q 005034 492 KNLSAAGIVFYMDPFVIGFQLNPTPMKMPGIIIPSPDDSKILLQYYNSSLERDEVTKKIIKFGAVACILGGLKANFSNSA 571 (718)
Q Consensus 492 ~~~ga~~vi~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 571 (718)
.....
T Consensus 214 ---------------------------------------------------------------------------~~~~~ 218 (311)
T cd07497 214 ---------------------------------------------------------------------------LPGGS 218 (311)
T ss_pred ---------------------------------------------------------------------------ccCCC
Confidence 01123
Q ss_pred CceeccccCCCCCCCCCCCCCCCCCCceeccCCceeecccCCCCCCccccCccccccCchhhhhHHHHHHHHHHHHhCC-
Q 005034 572 PKIMYYSARGPDPEDSFLDDADIMKPNLVAPGNSIWAAWSSLGTDSVEFQGESFAMMSGTSMAAPHIAGLAALIKQKFP- 650 (718)
Q Consensus 572 ~~~a~fSs~Gpt~~~~~~~~~g~~KPDI~APG~~I~Sa~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~q~~p- 650 (718)
+.++.||||||+.+ |++||||+|||++|+++.+.............|..++|||||||||||++|||+|++|
T Consensus 219 ~~~~~fSs~Gp~~~-------g~~kPdv~ApG~~i~s~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VaG~aALll~~~~~ 291 (311)
T cd07497 219 GDVVSWSSRGPSIA-------GDPKPDLAAIGAFAWAPGRVLDSGGALDGNEAFDLFGGTSMATPMTAGSAALVISALKE 291 (311)
T ss_pred CCccccccCCCCcc-------cCCCCceeccCcceEeecccCCCCcccCCCcceeeecchhhhhHHHHHHHHHHHHHhhh
Confidence 45899999999987 7999999999999999876432211111234789999999999999999999999886
Q ss_pred -----CCCHHHHHHHHHhcc
Q 005034 651 -----SFSPSAIASALSTSA 665 (718)
Q Consensus 651 -----~ls~~~ik~~L~~TA 665 (718)
.++|++||++|++||
T Consensus 292 ~~~~~~~~~~~vk~~L~~tA 311 (311)
T cd07497 292 KEGVGEYDPFLVRTILMSTA 311 (311)
T ss_pred hcCCCCCCHHHHHHHHHhcC
Confidence 589999999999997
No 7
>cd07475 Peptidases_S8_C5a_Peptidase Peptidase S8 family domain in Streptococcal C5a peptidases. Streptococcal C5a peptidase (SCP), is a highly specific protease and adhesin/invasin. The subtilisin-like protease domain is located at the N-terminus and contains a protease-associated domain inserted into a loop. There are three fibronectin type III (Fn) domains at the C-terminus. SCP binds to integrins with the help of Arg-Gly-Asp motifs which are thought to stabilize conformational changes required for substrate binding. Peptidases S8 or Subtilases are a serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intr
Probab=100.00 E-value=5.9e-48 Score=417.08 Aligned_cols=315 Identities=28% Similarity=0.445 Sum_probs=234.6
Q ss_pred cccccCCCCCCCCCcEEEEEccccCCCCCCCcCCCCCCCCCCCCCCC----ccccccCCCCCCCCCceeeeeeecchhhh
Q 005034 175 AWIQEGGYETAGEGVVIGFIDTGIDPTHPSFADDASEHSYPVPSHFS----GICEVTRDFPSGSCNRKLIGARHFAASAI 250 (718)
Q Consensus 175 ~w~~~~~~~~~G~gv~VaVIDtGid~~Hp~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~i~~~~~~~~~~~ 250 (718)
+|... .++|+||+|||||||||++||+|.+.... ...|. ............+.+.+++..++|.+..
T Consensus 2 ~w~~~---~~~G~gv~VaViDtGv~~~hp~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 72 (346)
T cd07475 2 LWDKG---GYKGEGMVVAVIDSGVDPTHDAFRLDDDS-----KAKYSEEFEAKKKKAGIGYGKYYNEKVPFAYNYADNN- 72 (346)
T ss_pred hhhhc---CCCCCCcEEEEEeCCCCCCChhHccCCCc-----ccccchhhhhhhhcccCCCCcccccCCCeeEcCCCCC-
Confidence 56652 24899999999999999999999987551 11110 0001111223345667888888887641
Q ss_pred hcCccCCCCCCCCCCCCCCCccccccccccCCCCCccccccccCccccccCCceEEEEeeccc--CCCCCHHHHHHHHHH
Q 005034 251 TRGIFNSSQDYASPFDGDGHGSHTASVAAGNHGIPVVVTGHHFGNASGMAPRSHIAVYKALYK--SFGGFAADVVAAIDQ 328 (718)
Q Consensus 251 ~~~~~~~~~~~~~~~d~~gHGThVAGiiag~~~~~~~~~g~~~~~~~GvAp~A~i~~~kv~~~--~~~~~~~~i~~ai~~ 328 (718)
.+.....+..+|||||||||+|..++.. ....+.||||+|+|+.+|+++. ........++.++++
T Consensus 73 --------~~~~~~~~~~~HGT~vagiiag~~~~~~-----~~~~~~GiAp~a~l~~~~v~~~~~~~~~~~~~~~~ai~~ 139 (346)
T cd07475 73 --------DDILDEDDGSSHGMHVAGIVAGNGDEED-----NGEGIKGVAPEAQLLAMKVFSNPEGGSTYDDAYAKAIED 139 (346)
T ss_pred --------CccCCCCCCCCcHHHHHHHHhcCCCccc-----cCCceEEeCCCCeEEEEEeecCCCCCCCCHHHHHHHHHH
Confidence 1111144788999999999999875321 1135789999999999999973 455778889999999
Q ss_pred HHHCCCCEEEEcCCCCCCCCCCCccccHHHHHHHHHHHCCCEEEEecCCCCCCCCC----------------CCCCCCce
Q 005034 329 AAQDGVDIISLSITPNRRPPGIATFFNPIDMALLSAAKAGIFVVQAAGNTGPSPKS----------------MSSFSPWI 392 (718)
Q Consensus 329 a~~~g~~ViN~S~G~~~~~~~~~~~~~~~~~a~~~a~~~GilvV~AAGN~g~~~~~----------------~~~~~~~v 392 (718)
+++.+++|||||||...... .....+.++++.+.++|++||+||||+|..... .|...+++
T Consensus 140 a~~~g~~Vin~S~G~~~~~~---~~~~~~~~~~~~a~~~giliv~aAGN~g~~~~~~~~~~~~~~~~~~~~~~p~~~~~~ 216 (346)
T cd07475 140 AVKLGADVINMSLGSTAGFV---DLDDPEQQAIKRAREAGVVVVVAAGNDGNSGSGTSKPLATNNPDTGTVGSPATADDV 216 (346)
T ss_pred HHHcCCCEEEECCCcCCCCC---CCCCHHHHHHHHHhhCCeEEEEeCCCCCccCccccCcccccCCCcceecCCccCCCc
Confidence 99999999999999875442 345788889999999999999999999875432 12234555
Q ss_pred EEEeeeccCCceeeeEEeCCCceEeeeccCCCCCceEEEEEcccccCCCCcccCCccccccCCCCCCccCCcCceEEEEE
Q 005034 393 FTVGAASHDRIYTNSIILGNSLTISGVGLAPGTDKMYTLISALHALNNNTTTTDDMYVGECQDSSNFNQDLVQGNLLICS 472 (718)
Q Consensus 393 itVgA~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~g~i~~~~ 472 (718)
|+||+++..
T Consensus 217 i~Vga~~~~----------------------------------------------------------------------- 225 (346)
T cd07475 217 LTVASANKK----------------------------------------------------------------------- 225 (346)
T ss_pred eEEeecccc-----------------------------------------------------------------------
Confidence 555554210
Q ss_pred eecccccCcchHHHHHHHHHhCCCcEEEEEeCCCccCcccCCCCCCCCeEEecCcchHHHHHHHHhccCCCccccceeee
Q 005034 473 YSIRFVLGLSTIKQAFETAKNLSAAGIVFYMDPFVIGFQLNPTPMKMPGIIIPSPDDSKILLQYYNSSLERDEVTKKIIK 552 (718)
Q Consensus 473 ~~~~~~~~~~~~~~~~~~~~~~ga~~vi~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 552 (718)
T Consensus 226 -------------------------------------------------------------------------------- 225 (346)
T cd07475 226 -------------------------------------------------------------------------------- 225 (346)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred eceeEEEecccccccCCCCCceeccccCCCCCCCCCCCCCCCCCCceeccCCceeecccCCCCCCccccCccccccCchh
Q 005034 553 FGAVACILGGLKANFSNSAPKIMYYSARGPDPEDSFLDDADIMKPNLVAPGNSIWAAWSSLGTDSVEFQGESFAMMSGTS 632 (718)
Q Consensus 553 ~~~~~~~~~~~~~~~~~~~~~~a~fSs~Gpt~~~~~~~~~g~~KPDI~APG~~I~Sa~~~~~~~~~~~~~~~y~~~sGTS 632 (718)
......+.++.||+|||+.+ +++||||+|||.+|+++. .++.|..++|||
T Consensus 226 -------------~~~~~~~~~~~~S~~G~~~~-------~~~~pdi~apG~~i~s~~----------~~~~~~~~~GTS 275 (346)
T cd07475 226 -------------VPNPNGGQMSGFSSWGPTPD-------LDLKPDITAPGGNIYSTV----------NDNTYGYMSGTS 275 (346)
T ss_pred -------------cCCCCCCccCCCcCCCCCcc-------cCcCCeEEeCCCCeEEec----------CCCceEeeCcHH
Confidence 01122345788999999986 699999999999999988 456889999999
Q ss_pred hhhHHHHHHHHHHHHh----CCCCCHHH----HHHHHHhcccccccCCCccccccccCCCCCCCCCCCCCcccccccccc
Q 005034 633 MAAPHIAGLAALIKQK----FPSFSPSA----IASALSTSATLYDKNGGPIMAQRAYAKPDENQSPATPFDMGSGFVNAT 704 (718)
Q Consensus 633 mAaP~VAG~aALl~q~----~p~ls~~~----ik~~L~~TA~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~G~vn~~ 704 (718)
||||+|||++|||+|+ +|.|++.+ ||++|++||.+.... .+...++.+.++|+|+||+.
T Consensus 276 ~AaP~VaG~aALl~~~~~~~~p~l~~~~~~~~ik~~l~~ta~~~~~~-------------~~~~~~~~~~~~G~G~vn~~ 342 (346)
T cd07475 276 MASPHVAGASALVKQRLKEKYPKLSGEELVDLVKNLLMNTATPPLDS-------------EDTKTYYSPRRQGAGLIDVA 342 (346)
T ss_pred HHHHHHHHHHHHHHHHHHhhCCCCCHHHHHHHHHHHHHhcCCccccc-------------CCCCccCCccccCcchhcHH
Confidence 9999999999999997 78888876 788999999853211 12345677889999999999
Q ss_pred ccCC
Q 005034 705 ASLD 708 (718)
Q Consensus 705 ~Al~ 708 (718)
+||+
T Consensus 343 ~Av~ 346 (346)
T cd07475 343 KAIA 346 (346)
T ss_pred HhhC
Confidence 9985
No 8
>cd07489 Peptidases_S8_5 Peptidase S8 family domain, uncharacterized subfamily 5. gap in seq This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values.
Probab=100.00 E-value=1.5e-47 Score=407.50 Aligned_cols=297 Identities=29% Similarity=0.422 Sum_probs=229.8
Q ss_pred cccccCCCCCCCCCcEEEEEccccCCCCCCCcCCCCCCCCCCCCCCCccccccCCCCCCCCCceeeeeeecchhhhhcCc
Q 005034 175 AWIQEGGYETAGEGVVIGFIDTGIDPTHPSFADDASEHSYPVPSHFSGICEVTRDFPSGSCNRKLIGARHFAASAITRGI 254 (718)
Q Consensus 175 ~w~~~~~~~~~G~gv~VaVIDtGid~~Hp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~ 254 (718)
+|.. +++|+||+|||||+|||++||+|.++.. ... ++.+.++|...... .
T Consensus 5 ~~~~----g~tG~gv~VaViDsGid~~hp~l~~~~~-~~~-----------------------~~~~~~d~~~~~~~--~ 54 (312)
T cd07489 5 LHAE----GITGKGVKVAVVDTGIDYTHPALGGCFG-PGC-----------------------KVAGGYDFVGDDYD--G 54 (312)
T ss_pred HHhC----CCCCCCCEEEEEECCCCCCChhhhcCCC-CCc-----------------------eeccccccCCcccc--c
Confidence 5555 8999999999999999999999998654 001 11122222211000 0
Q ss_pred cCCCCCCCCCCCCCCCccccccccccCCCCCccccccccCccccccCCceEEEEeecccCCCCCHHHHHHHHHHHHHCCC
Q 005034 255 FNSSQDYASPFDGDGHGSHTASVAAGNHGIPVVVTGHHFGNASGMAPRSHIAVYKALYKSFGGFAADVVAAIDQAAQDGV 334 (718)
Q Consensus 255 ~~~~~~~~~~~d~~gHGThVAGiiag~~~~~~~~~g~~~~~~~GvAp~A~i~~~kv~~~~~~~~~~~i~~ai~~a~~~g~ 334 (718)
.+...+...+.|..+|||||||||+|..++ .++.||||+|+|+.+|+++.........++++|++++++++
T Consensus 55 ~~~~~~~~~~~d~~gHGT~vAgiia~~~~~---------~~~~GiAp~a~i~~~~v~~~~~~~~~~~~~~ai~~a~~~~~ 125 (312)
T cd07489 55 TNPPVPDDDPMDCQGHGTHVAGIIAANPNA---------YGFTGVAPEATLGAYRVFGCSGSTTEDTIIAAFLRAYEDGA 125 (312)
T ss_pred ccCCCCCCCCCCCCCcHHHHHHHHhcCCCC---------CceEEECCCCEEEEEEeecCCCCCCHHHHHHHHHHHHhcCC
Confidence 011122345567799999999999998643 35689999999999999987566778889999999999999
Q ss_pred CEEEEcCCCCCCCCCCCccccHHHHHHHHHHHCCCEEEEecCCCCCCCC---CCCCCCCceEEEeeeccCCceeeeEEeC
Q 005034 335 DIISLSITPNRRPPGIATFFNPIDMALLSAAKAGIFVVQAAGNTGPSPK---SMSSFSPWIFTVGAASHDRIYTNSIILG 411 (718)
Q Consensus 335 ~ViN~S~G~~~~~~~~~~~~~~~~~a~~~a~~~GilvV~AAGN~g~~~~---~~~~~~~~vitVgA~~~~~~~~~~~~~~ 411 (718)
+|||||||..... ....+.++++.+.++|+++|+||||+|.... ..|+..+++|+||+++
T Consensus 126 ~iIn~S~g~~~~~-----~~~~~~~~~~~~~~~gv~iv~aaGN~g~~~~~~~~~p~~~~~vi~Vga~~------------ 188 (312)
T cd07489 126 DVITASLGGPSGW-----SEDPWAVVASRIVDAGVVVTIAAGNDGERGPFYASSPASGRGVIAVASVD------------ 188 (312)
T ss_pred CEEEeCCCcCCCC-----CCCHHHHHHHHHHHCCCEEEEECCCCCCCCCCcccCCccCCCeEEEEEec------------
Confidence 9999999986533 2366777888899999999999999987542 3456678888888742
Q ss_pred CCceEeeeccCCCCCceEEEEEcccccCCCCcccCCccccccCCCCCCccCCcCceEEEEEeecccccCcchHHHHHHHH
Q 005034 412 NSLTISGVGLAPGTDKMYTLISALHALNNNTTTTDDMYVGECQDSSNFNQDLVQGNLLICSYSIRFVLGLSTIKQAFETA 491 (718)
Q Consensus 412 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~g~i~~~~~~~~~~~~~~~~~~~~~~~ 491 (718)
T Consensus 189 -------------------------------------------------------------------------------- 188 (312)
T cd07489 189 -------------------------------------------------------------------------------- 188 (312)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HhCCCcEEEEEeCCCccCcccCCCCCCCCeEEecCcchHHHHHHHHhccCCCccccceeeeeceeEEEecccccccCCCC
Q 005034 492 KNLSAAGIVFYMDPFVIGFQLNPTPMKMPGIIIPSPDDSKILLQYYNSSLERDEVTKKIIKFGAVACILGGLKANFSNSA 571 (718)
Q Consensus 492 ~~~ga~~vi~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 571 (718)
T Consensus 189 -------------------------------------------------------------------------------- 188 (312)
T cd07489 189 -------------------------------------------------------------------------------- 188 (312)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CceeccccCCCCCCCCCCCCCCCCCCceeccCCceeecccCCCCCCccccCccccccCchhhhhHHHHHHHHHHHHhC-C
Q 005034 572 PKIMYYSARGPDPEDSFLDDADIMKPNLVAPGNSIWAAWSSLGTDSVEFQGESFAMMSGTSMAAPHIAGLAALIKQKF-P 650 (718)
Q Consensus 572 ~~~a~fSs~Gpt~~~~~~~~~g~~KPDI~APG~~I~Sa~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~q~~-p 650 (718)
+.||++||+.+ .+.||||+|||.+++++++.. .+.|..++|||||||+|||++|||+|++ |
T Consensus 189 ---~~~s~~g~~~~-------~~~kpdv~ApG~~i~~~~~~~--------~~~~~~~~GTS~Aap~vaG~~Al~~~~~~~ 250 (312)
T cd07489 189 ---SYFSSWGPTNE-------LYLKPDVAAPGGNILSTYPLA--------GGGYAVLSGTSMATPYVAGAAALLIQARHG 250 (312)
T ss_pred ---CCccCCCCCCC-------CCcCccEEcCCCCEEEeeeCC--------CCceEeeccHHHHHHHHHHHHHHHHHhcCC
Confidence 34689999986 589999999999999988432 2258999999999999999999999999 9
Q ss_pred CCCHHHHHHHHHhcccccccCCCccccccccCCCCCCCCCCCCCccccccccccccCCCCeeeec
Q 005034 651 SFSPSAIASALSTSATLYDKNGGPIMAQRAYAKPDENQSPATPFDMGSGFVNATASLDPGLVFDA 715 (718)
Q Consensus 651 ~ls~~~ik~~L~~TA~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~G~vn~~~Al~~~l~~~~ 715 (718)
.+++.+||++|++||.++...+.. .....++++.++|||+||+.+||+..-.++.
T Consensus 251 ~~~~~~v~~~l~~ta~~~~~~~~~----------~~~~~~~~~~~~G~G~vn~~~a~~~~~~~~~ 305 (312)
T cd07489 251 KLSPAELRDLLASTAKPLPWSDGT----------SALPDLAPVAQQGAGLVNAYKALYATTTLSP 305 (312)
T ss_pred CCCHHHHHHHHHHhCccccccCCC----------ccccCCCCHhhcCcceeeHHHHhcCCccccc
Confidence 999999999999999987654321 0111246778999999999999998766654
No 9
>cd07476 Peptidases_S8_thiazoline_oxidase_subtilisin-like_protease Peptidase S8 family domain in Thiazoline oxidase/subtilisin-like proteases. Thiazoline oxidase/subtilisin-like protease is produced by the symbiotic bacteria Prochloron spp. that inhabit didemnid family ascidians. The cyclic peptides of the patellamide class found in didemnid extracts are now known to be synthesized by the Prochloron spp. The prepatellamide is heterocyclized to form thiazole and oxazoline rings and the peptide is cleaved to form the two cyclic patellamides A and C. Subtilases, or subtilisin-like serine proteases, have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure (an example of convergent evolution).
Probab=100.00 E-value=7.9e-47 Score=390.41 Aligned_cols=246 Identities=27% Similarity=0.321 Sum_probs=202.6
Q ss_pred CCCCCCcEEEEEccccCCCCCCCcCCCCCCCCCCCCCCCccccccCCCCCCCCCceeeeeeecchhhhhcCccCCCCCCC
Q 005034 183 ETAGEGVVIGFIDTGIDPTHPSFADDASEHSYPVPSHFSGICEVTRDFPSGSCNRKLIGARHFAASAITRGIFNSSQDYA 262 (718)
Q Consensus 183 ~~~G~gv~VaVIDtGid~~Hp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~ 262 (718)
+++|+||+|||||+|||.+||+|.+... ......| ....
T Consensus 6 g~~g~gV~VaViDsGid~~hp~l~~~~~---~~~~~~~--------------------------------------~~~~ 44 (267)
T cd07476 6 GGGDPRITIAILDGPVDRTHPCFRGANL---TPLFTYA--------------------------------------AAAC 44 (267)
T ss_pred cCCCCCeEEEEeCCCcCCCChhhCCCcc---ccccCcc--------------------------------------ccCC
Confidence 7999999999999999999999997543 0000000 0012
Q ss_pred CCCCCCCCccccccccccCCCCCccccccccCccccccCCceEEEEeecccCCCC-CHHHHHHHHHHHHHCCCCEEEEcC
Q 005034 263 SPFDGDGHGSHTASVAAGNHGIPVVVTGHHFGNASGMAPRSHIAVYKALYKSFGG-FAADVVAAIDQAAQDGVDIISLSI 341 (718)
Q Consensus 263 ~~~d~~gHGThVAGiiag~~~~~~~~~g~~~~~~~GvAp~A~i~~~kv~~~~~~~-~~~~i~~ai~~a~~~g~~ViN~S~ 341 (718)
...|..+|||||||||+|+.. .++.||||+|+|+.++++.....+ ...++++||+||+++|++||||||
T Consensus 45 ~~~~~~gHGT~VAgii~g~~~----------~~~~GvAp~a~i~~~~v~~~~~~~~~~~~i~~ai~~a~~~g~~VIN~S~ 114 (267)
T cd07476 45 QDGGASAHGTHVASLIFGQPC----------SSVEGIAPLCRGLNIPIFAEDRRGCSQLDLARAINLALEQGAHIINISG 114 (267)
T ss_pred CCCCCCCcHHHHHHHHhcCCC----------CCceeECcCCeEEEEEEEeCCCCCCCHHHHHHHHHHHHHCCCCEEEecC
Confidence 334678999999999998753 235799999999999999875444 377899999999999999999999
Q ss_pred CCCCCCCCCCccccHHHHHHHHHHHCCCEEEEecCCCCCCCCCCCCCCCceEEEeeeccCCceeeeEEeCCCceEeeecc
Q 005034 342 TPNRRPPGIATFFNPIDMALLSAAKAGIFVVQAAGNTGPSPKSMSSFSPWIFTVGAASHDRIYTNSIILGNSLTISGVGL 421 (718)
Q Consensus 342 G~~~~~~~~~~~~~~~~~a~~~a~~~GilvV~AAGN~g~~~~~~~~~~~~vitVgA~~~~~~~~~~~~~~~~~~~~~~~~ 421 (718)
|..... ......+.++++.+.++|++||+||||+|.....+|+..++||+|||++.+
T Consensus 115 G~~~~~---~~~~~~l~~a~~~a~~~gvlvv~AaGN~g~~~~~~Pa~~~~vi~Vga~~~~-------------------- 171 (267)
T cd07476 115 GRLTQT---GEADPILANAVAMCQQNNVLIVAAAGNEGCACLHVPAALPSVLAVGAMDDD-------------------- 171 (267)
T ss_pred CcCCCC---CCCCHHHHHHHHHHHHCCCEEEEecCCCCCCCCCCcccCCceEEEEeecCC--------------------
Confidence 975422 224567889999999999999999999998888889999999999996422
Q ss_pred CCCCCceEEEEEcccccCCCCcccCCccccccCCCCCCccCCcCceEEEEEeecccccCcchHHHHHHHHHhCCCcEEEE
Q 005034 422 APGTDKMYTLISALHALNNNTTTTDDMYVGECQDSSNFNQDLVQGNLLICSYSIRFVLGLSTIKQAFETAKNLSAAGIVF 501 (718)
Q Consensus 422 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~g~i~~~~~~~~~~~~~~~~~~~~~~~~~~ga~~vi~ 501 (718)
T Consensus 172 -------------------------------------------------------------------------------- 171 (267)
T cd07476 172 -------------------------------------------------------------------------------- 171 (267)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred EeCCCccCcccCCCCCCCCeEEecCcchHHHHHHHHhccCCCccccceeeeeceeEEEecccccccCCCCCceeccccCC
Q 005034 502 YMDPFVIGFQLNPTPMKMPGIIIPSPDDSKILLQYYNSSLERDEVTKKIIKFGAVACILGGLKANFSNSAPKIMYYSARG 581 (718)
Q Consensus 502 ~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~fSs~G 581 (718)
+.++.||+||
T Consensus 172 ----------------------------------------------------------------------~~~~~~s~~g 181 (267)
T cd07476 172 ----------------------------------------------------------------------GLPLKFSNWG 181 (267)
T ss_pred ----------------------------------------------------------------------CCeeeecCCC
Confidence 1246789999
Q ss_pred CCCCCCCCCCCCCCCCceeccCCceeecccCCCCCCccccCccccccCchhhhhHHHHHHHHHHHHhCCC----CCHHHH
Q 005034 582 PDPEDSFLDDADIMKPNLVAPGNSIWAAWSSLGTDSVEFQGESFAMMSGTSMAAPHIAGLAALIKQKFPS----FSPSAI 657 (718)
Q Consensus 582 pt~~~~~~~~~g~~KPDI~APG~~I~Sa~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~q~~p~----ls~~~i 657 (718)
+.. .||||+|||.+|+++. +++.|..++|||||||||||++|||+|++|. +++++|
T Consensus 182 ~~~----------~~~~l~ApG~~i~~~~----------~~~~~~~~sGTS~AaP~vaG~aALl~s~~~~~~~~~~~~~v 241 (267)
T cd07476 182 ADY----------RKKGILAPGENILGAA----------LGGEVVRRSGTSFAAAIVAGIAALLLSLQLRRGAPPDPLAV 241 (267)
T ss_pred CCC----------CCceEEecCCCceeec----------CCCCeEEeccHHHHHHHHHHHHHHHHHhhhhhCCCCCHHHH
Confidence 864 4789999999999988 5678999999999999999999999999987 899999
Q ss_pred HHHHHhcccccccCC
Q 005034 658 ASALSTSATLYDKNG 672 (718)
Q Consensus 658 k~~L~~TA~~~~~~~ 672 (718)
|++|++||++++..+
T Consensus 242 k~~L~~tA~~~~~~~ 256 (267)
T cd07476 242 RRALLETATPCDPEA 256 (267)
T ss_pred HHHHHHhCccCCCcc
Confidence 999999999986543
No 10
>cd05561 Peptidases_S8_4 Peptidase S8 family domain, uncharacterized subfamily 4. This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values.
Probab=100.00 E-value=7.9e-47 Score=385.15 Aligned_cols=235 Identities=29% Similarity=0.443 Sum_probs=195.2
Q ss_pred cEEEEEccccCCCCCCCcCCCCCCCCCCCCCCCccccccCCCCCCCCCceeeeeeecchhhhhcCccCCCCCCCCCCCCC
Q 005034 189 VVIGFIDTGIDPTHPSFADDASEHSYPVPSHFSGICEVTRDFPSGSCNRKLIGARHFAASAITRGIFNSSQDYASPFDGD 268 (718)
Q Consensus 189 v~VaVIDtGid~~Hp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~d~~ 268 (718)
|+|||||||||.+||+|.++... .| ++. .....|..
T Consensus 1 V~VavIDsGvd~~hp~l~~~~~~-------~~-----------------------~~~--------------~~~~~~~~ 36 (239)
T cd05561 1 VRVGMIDTGIDTAHPALSAVVIA-------RL-----------------------FFA--------------GPGAPAPS 36 (239)
T ss_pred CEEEEEeCCCCCCCcccccCccc-------cc-----------------------cCC--------------CCCCCCCC
Confidence 78999999999999999875430 00 000 01234678
Q ss_pred CCccccccccccCCCCCccccccccCccccccCCceEEEEeecccCC---CCCHHHHHHHHHHHHHCCCCEEEEcCCCCC
Q 005034 269 GHGSHTASVAAGNHGIPVVVTGHHFGNASGMAPRSHIAVYKALYKSF---GGFAADVVAAIDQAAQDGVDIISLSITPNR 345 (718)
Q Consensus 269 gHGThVAGiiag~~~~~~~~~g~~~~~~~GvAp~A~i~~~kv~~~~~---~~~~~~i~~ai~~a~~~g~~ViN~S~G~~~ 345 (718)
+|||||||||+|.... ..|+||+|+|+.+|++.... ..+..++++||+||+++|++|||||||...
T Consensus 37 ~HGT~vAgiia~~~~~-----------~~Gvap~a~i~~~~v~~~~~~~~~~~~~~i~~ai~~a~~~g~~VIn~S~g~~~ 105 (239)
T cd05561 37 AHGTAVASLLAGAGAQ-----------RPGLLPGADLYGADVFGRAGGGEGASALALARALDWLAEQGVRVVNISLAGPP 105 (239)
T ss_pred CCHHHHHHHHhCCCCC-----------CcccCCCCEEEEEEEecCCCCCCCcCHHHHHHHHHHHHHCCCCEEEeCCCCCC
Confidence 9999999999998532 16999999999999998642 367788999999999999999999999642
Q ss_pred CCCCCCccccHHHHHHHHHHHCCCEEEEecCCCCCCC-CCCCCCCCceEEEeeeccCCceeeeEEeCCCceEeeeccCCC
Q 005034 346 RPPGIATFFNPIDMALLSAAKAGIFVVQAAGNTGPSP-KSMSSFSPWIFTVGAASHDRIYTNSIILGNSLTISGVGLAPG 424 (718)
Q Consensus 346 ~~~~~~~~~~~~~~a~~~a~~~GilvV~AAGN~g~~~-~~~~~~~~~vitVgA~~~~~~~~~~~~~~~~~~~~~~~~~~~ 424 (718)
...++++++.+.++|++||+||||+|... ..+|+..++||+||+++.+
T Consensus 106 --------~~~l~~ai~~a~~~gilvv~AaGN~g~~~~~~~Pa~~~~vi~V~a~~~~----------------------- 154 (239)
T cd05561 106 --------NALLAAAVAAAAARGMVLVAAAGNDGPAAPPLYPAAYPGVIAVTAVDAR----------------------- 154 (239)
T ss_pred --------CHHHHHHHHHHHHCCCEEEEecCCCCCCCCccCcccCCCceEEEeecCC-----------------------
Confidence 25788899999999999999999999753 4678888999999986432
Q ss_pred CCceEEEEEcccccCCCCcccCCccccccCCCCCCccCCcCceEEEEEeecccccCcchHHHHHHHHHhCCCcEEEEEeC
Q 005034 425 TDKMYTLISALHALNNNTTTTDDMYVGECQDSSNFNQDLVQGNLLICSYSIRFVLGLSTIKQAFETAKNLSAAGIVFYMD 504 (718)
Q Consensus 425 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~g~i~~~~~~~~~~~~~~~~~~~~~~~~~~ga~~vi~~~~ 504 (718)
T Consensus 155 -------------------------------------------------------------------------------- 154 (239)
T cd05561 155 -------------------------------------------------------------------------------- 154 (239)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCccCcccCCCCCCCCeEEecCcchHHHHHHHHhccCCCccccceeeeeceeEEEecccccccCCCCCceeccccCCCCC
Q 005034 505 PFVIGFQLNPTPMKMPGIIIPSPDDSKILLQYYNSSLERDEVTKKIIKFGAVACILGGLKANFSNSAPKIMYYSARGPDP 584 (718)
Q Consensus 505 ~~~~~~~~~~~~~~~p~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~fSs~Gpt~ 584 (718)
+.++.||++|+..
T Consensus 155 -------------------------------------------------------------------~~~~~~s~~g~~~ 167 (239)
T cd05561 155 -------------------------------------------------------------------GRLYREANRGAHV 167 (239)
T ss_pred -------------------------------------------------------------------CCccccCCCCCcc
Confidence 1356789999876
Q ss_pred CCCCCCCCCCCCCceeccCCceeecccCCCCCCccccCccccccCchhhhhHHHHHHHHHHHHhCCCCCHHHHHHHHHhc
Q 005034 585 EDSFLDDADIMKPNLVAPGNSIWAAWSSLGTDSVEFQGESFAMMSGTSMAAPHIAGLAALIKQKFPSFSPSAIASALSTS 664 (718)
Q Consensus 585 ~~~~~~~~g~~KPDI~APG~~I~Sa~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~q~~p~ls~~~ik~~L~~T 664 (718)
||+|||.+|+++. +++.|..++|||||||||||++|||+|++| ++++|||++|++|
T Consensus 168 -------------di~ApG~~i~~~~----------~~~~~~~~sGTS~AaP~vaG~aAll~~~~p-~~~~~i~~~L~~t 223 (239)
T cd05561 168 -------------DFAAPGVDVWVAA----------PGGGYRYVSGTSFAAPFVTAALALLLQASP-LAPDDARARLAAT 223 (239)
T ss_pred -------------eEEccccceeccc----------CCCCEEEeCCHHHHHHHHHHHHHHHHhcCC-CCHHHHHHHHHHH
Confidence 8999999999976 566899999999999999999999999999 9999999999999
Q ss_pred ccccccCCCccccccccCCCCCCCCCCCCCccccc
Q 005034 665 ATLYDKNGGPIMAQRAYAKPDENQSPATPFDMGSG 699 (718)
Q Consensus 665 A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~G 699 (718)
|++++..+. +..||||
T Consensus 224 a~~~g~~~~-------------------d~~~G~G 239 (239)
T cd05561 224 AKDLGPPGR-------------------DPVFGYG 239 (239)
T ss_pred hhccCCCCc-------------------CCCcCCC
Confidence 998765544 6789998
No 11
>cd07483 Peptidases_S8_Subtilisin_Novo-like Peptidase S8 family domain in Subtilisin_Novo-like proteins. Subtilisins are a group of alkaline proteinases originating from different strains of Bacillus subtilis. Novo is one of the strains that produced enzymes belonging to this group. The enzymes obtained from the Novo and BPN' strains are identical. The Carlsburg and Novo subtilisins are thought to have arisen from a common ancestral protein. They have similar peptidase and esterase activities, pH profiles, catalyze transesterification reactions, and are both inhibited by diispropyl fluorophosphate, though they differ in 85 positions in the amino acid sequence. Members of the peptidases S8 and S35 clan include endopeptidases, exopeptidases and also a tripeptidyl-peptidase. The S8 family has an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The S53 family contains a cat
Probab=100.00 E-value=2.5e-46 Score=392.86 Aligned_cols=269 Identities=23% Similarity=0.369 Sum_probs=197.4
Q ss_pred CCcEEEEEccccCCCCCCCcCCCCCCCCCCCCCCCccccccCCCCCCCCCceeeeeeecchhhhh-----cCccC-----
Q 005034 187 EGVVIGFIDTGIDPTHPSFADDASEHSYPVPSHFSGICEVTRDFPSGSCNRKLIGARHFAASAIT-----RGIFN----- 256 (718)
Q Consensus 187 ~gv~VaVIDtGid~~Hp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~-----~~~~~----- 256 (718)
|+|+|||||||||++||+|+++.+.++.+++. ++.+..+.++..+ +.+++|...... ....+
T Consensus 1 ~~V~VaviDtGid~~Hpdl~~~~~~n~~e~~~--~~~d~d~ng~~dd------~~g~~f~~~~~~~~~~~~~~~~~~~~~ 72 (291)
T cd07483 1 KTVIVAVLDSGVDIDHEDLKGKLWINKKEIPG--NGIDDDNNGYIDD------VNGWNFLGQYDPRRIVGDDPYDLTEKG 72 (291)
T ss_pred CceEEEEEeCCCCCCChhhhhhhhcCCcccCC--CCccCCCCCcccc------ccCeeccCCcccccccccCcccccccc
Confidence 58999999999999999999988755555432 2222222222211 233444321100 00000
Q ss_pred -CCCCCCCCCCCCCCccccccccccCCCCCccccccccCccccccCCceEEEEeecccCCCCCHHHHHHHHHHHHHCCCC
Q 005034 257 -SSQDYASPFDGDGHGSHTASVAAGNHGIPVVVTGHHFGNASGMAPRSHIAVYKALYKSFGGFAADVVAAIDQAAQDGVD 335 (718)
Q Consensus 257 -~~~~~~~~~d~~gHGThVAGiiag~~~~~~~~~g~~~~~~~GvAp~A~i~~~kv~~~~~~~~~~~i~~ai~~a~~~g~~ 335 (718)
...+...+.+..+|||||||||+|..+++ .++.||||+|+|+.+|++.. +.....++++||+||+++|++
T Consensus 73 ~g~~~~~~~~~~~gHGT~VAGiIaa~~~n~--------~g~~GvAp~a~i~~~k~~~~-g~~~~~~i~~Ai~~a~~~g~~ 143 (291)
T cd07483 73 YGNNDVNGPISDADHGTHVAGIIAAVRDNG--------IGIDGVADNVKIMPLRIVPN-GDERDKDIANAIRYAVDNGAK 143 (291)
T ss_pred ccccccCCCCCCCCcHHHHHHHHhCcCCCC--------CceEEECCCCEEEEEEEecC-CCcCHHHHHHHHHHHHHCCCc
Confidence 01122334578899999999999986543 24689999999999999864 556778999999999999999
Q ss_pred EEEEcCCCCCCCCCCCccccHHHHHHHHHHHCCCEEEEecCCCCCCCCC---CCC--------CCCceEEEeeeccCCce
Q 005034 336 IISLSITPNRRPPGIATFFNPIDMALLSAAKAGIFVVQAAGNTGPSPKS---MSS--------FSPWIFTVGAASHDRIY 404 (718)
Q Consensus 336 ViN~S~G~~~~~~~~~~~~~~~~~a~~~a~~~GilvV~AAGN~g~~~~~---~~~--------~~~~vitVgA~~~~~~~ 404 (718)
|||||||..... ....++++++.+.++|++||+||||+|.+... +|. ..+++|+||+++...
T Consensus 144 IiN~S~G~~~~~-----~~~~~~~ai~~a~~~gilvV~AAGN~g~~~~~~~~~p~~~~~~~~~~~~~vi~Vga~~~~~-- 216 (291)
T cd07483 144 VINMSFGKSFSP-----NKEWVDDAIKYAESKGVLIVHAAGNDGLDLDITPNFPNDYDKNGGEPANNFITVGASSKKY-- 216 (291)
T ss_pred EEEeCCCCCCCC-----ccHHHHHHHHHHHhCCeEEEEeCCCCCCCCCcCcCCCCcccccCccccCCeeEEeeccccC--
Confidence 999999965322 23568889999999999999999999975322 222 235666666643210
Q ss_pred eeeEEeCCCceEeeeccCCCCCceEEEEEcccccCCCCcccCCccccccCCCCCCccCCcCceEEEEEeecccccCcchH
Q 005034 405 TNSIILGNSLTISGVGLAPGTDKMYTLISALHALNNNTTTTDDMYVGECQDSSNFNQDLVQGNLLICSYSIRFVLGLSTI 484 (718)
Q Consensus 405 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~g~i~~~~~~~~~~~~~~~~ 484 (718)
T Consensus 217 -------------------------------------------------------------------------------- 216 (291)
T cd07483 217 -------------------------------------------------------------------------------- 216 (291)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHHHHhCCCcEEEEEeCCCccCcccCCCCCCCCeEEecCcchHHHHHHHHhccCCCccccceeeeeceeEEEecccc
Q 005034 485 KQAFETAKNLSAAGIVFYMDPFVIGFQLNPTPMKMPGIIIPSPDDSKILLQYYNSSLERDEVTKKIIKFGAVACILGGLK 564 (718)
Q Consensus 485 ~~~~~~~~~~ga~~vi~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 564 (718)
T Consensus 217 -------------------------------------------------------------------------------- 216 (291)
T cd07483 217 -------------------------------------------------------------------------------- 216 (291)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cccCCCCCceeccccCCCCCCCCCCCCCCCCCCceeccCCceeecccCCCCCCccccCccccccCchhhhhHHHHHHHHH
Q 005034 565 ANFSNSAPKIMYYSARGPDPEDSFLDDADIMKPNLVAPGNSIWAAWSSLGTDSVEFQGESFAMMSGTSMAAPHIAGLAAL 644 (718)
Q Consensus 565 ~~~~~~~~~~a~fSs~Gpt~~~~~~~~~g~~KPDI~APG~~I~Sa~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aAL 644 (718)
....++.||++|+.. |||+|||.+|+++. +++.|..++|||||||||||++||
T Consensus 217 -----~~~~~~~~Sn~G~~~------------vdi~APG~~i~s~~----------~~~~~~~~sGTS~AaP~vaG~aAl 269 (291)
T cd07483 217 -----ENNLVANFSNYGKKN------------VDVFAPGERIYSTT----------PDNEYETDSGTSMAAPVVSGVAAL 269 (291)
T ss_pred -----CcccccccCCCCCCc------------eEEEeCCCCeEecc----------CcCCeEeeccHHHHHHHHHHHHHH
Confidence 011367899999743 49999999999997 566899999999999999999999
Q ss_pred HHHhCCCCCHHHHHHHHHhccc
Q 005034 645 IKQKFPSFSPSAIASALSTSAT 666 (718)
Q Consensus 645 l~q~~p~ls~~~ik~~L~~TA~ 666 (718)
|+|++|+|++.|||++|++||+
T Consensus 270 ~~s~~p~lt~~~v~~~L~~ta~ 291 (291)
T cd07483 270 IWSYYPNLTAKEVKQIILESGV 291 (291)
T ss_pred HHHHCCCCCHHHHHHHHHHhCC
Confidence 9999999999999999999984
No 12
>cd07474 Peptidases_S8_subtilisin_Vpr-like Peptidase S8 family domain in Vpr-like proteins. The maturation of the peptide antibiotic (lantibiotic) subtilin in Bacillus subtilis ATCC 6633 includes posttranslational modifications of the propeptide and proteolytic cleavage of the leader peptide. Vpr was identified as one of the proteases, along with WprA, that are capable of processing subtilin. Asp, Ser, His triadPeptidases S8 or Subtilases are a serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values.
Probab=100.00 E-value=5.7e-46 Score=392.88 Aligned_cols=289 Identities=37% Similarity=0.533 Sum_probs=217.3
Q ss_pred CCCcEEEEEccccCCCCCCCcCCCCCCCCCCCCCCCccccccCCCCCCCCCceeeeeeecchhhhhcCc---cCCCCCCC
Q 005034 186 GEGVVIGFIDTGIDPTHPSFADDASEHSYPVPSHFSGICEVTRDFPSGSCNRKLIGARHFAASAITRGI---FNSSQDYA 262 (718)
Q Consensus 186 G~gv~VaVIDtGid~~Hp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~---~~~~~~~~ 262 (718)
|+||+|||||+||+++||+|.+... .+.++...++|......... ........
T Consensus 1 G~gV~VaViDsGi~~~hp~l~~~~~------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 56 (295)
T cd07474 1 GKGVKVAVIDTGIDYTHPDLGGPGF------------------------PNDKVKGGYDFVDDDYDPMDTRPYPSPLGDA 56 (295)
T ss_pred CCCCEEEEEECCcCCCCcccccCCC------------------------CCCceeeeeECccCCCCcccccccccccccC
Confidence 8999999999999999999986432 11233334444322100000 00000112
Q ss_pred CCCCCCCCccccccccccCCCCCccccccccCccccccCCceEEEEeecccCCCCCHHHHHHHHHHHHHCCCCEEEEcCC
Q 005034 263 SPFDGDGHGSHTASVAAGNHGIPVVVTGHHFGNASGMAPRSHIAVYKALYKSFGGFAADVVAAIDQAAQDGVDIISLSIT 342 (718)
Q Consensus 263 ~~~d~~gHGThVAGiiag~~~~~~~~~g~~~~~~~GvAp~A~i~~~kv~~~~~~~~~~~i~~ai~~a~~~g~~ViN~S~G 342 (718)
...|..+|||||||+|+|..++. ..+.||||+|+|+.+|++.....+...+++++|+|+++.+++|||||||
T Consensus 57 ~~~~~~~HGT~vAgiiag~~~n~--------~~~~Giap~a~i~~~~~~~~~~~~~~~~~~~ai~~a~~~~~~Iin~S~g 128 (295)
T cd07474 57 SAGDATGHGTHVAGIIAGNGVNV--------GTIKGVAPKADLYAYKVLGPGGSGTTDVIIAAIEQAVDDGMDVINLSLG 128 (295)
T ss_pred CCCCCCCcHHHHHHHHhcCCCcc--------CceEeECCCCeEEEEEeecCCCCCCHHHHHHHHHHHHHcCCCEEEeCCC
Confidence 24568899999999999886442 3568999999999999998656688899999999999999999999999
Q ss_pred CCCCCCCCCccccHHHHHHHHHHHCCCEEEEecCCCCCCCCC--CCCCCCceEEEeeeccCCceeeeEEeCCCceEeeec
Q 005034 343 PNRRPPGIATFFNPIDMALLSAAKAGIFVVQAAGNTGPSPKS--MSSFSPWIFTVGAASHDRIYTNSIILGNSLTISGVG 420 (718)
Q Consensus 343 ~~~~~~~~~~~~~~~~~a~~~a~~~GilvV~AAGN~g~~~~~--~~~~~~~vitVgA~~~~~~~~~~~~~~~~~~~~~~~ 420 (718)
..... ....+.++++.+.++|++||+||||+|..... .|+..+++|+||+++....
T Consensus 129 ~~~~~-----~~~~~~~~~~~~~~~gil~V~aAGN~g~~~~~~~~pa~~~~~i~Vga~~~~~~----------------- 186 (295)
T cd07474 129 SSVNG-----PDDPDAIAINNAVKAGVVVVAAAGNSGPAPYTIGSPATAPSAITVGASTVADV----------------- 186 (295)
T ss_pred CCCCC-----CCCHHHHHHHHHHhcCCEEEEECCCCCCCCCcccCCCcCCCeEEEeeeeccCc-----------------
Confidence 76432 34677888899999999999999999876544 4677899999999641100
Q ss_pred cCCCCCceEEEEEcccccCCCCcccCCccccccCCCCCCccCCcCceEEEEEeecccccCcchHHHHHHHHHhCCCcEEE
Q 005034 421 LAPGTDKMYTLISALHALNNNTTTTDDMYVGECQDSSNFNQDLVQGNLLICSYSIRFVLGLSTIKQAFETAKNLSAAGIV 500 (718)
Q Consensus 421 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~g~i~~~~~~~~~~~~~~~~~~~~~~~~~~ga~~vi 500 (718)
T Consensus 187 -------------------------------------------------------------------------------- 186 (295)
T cd07474 187 -------------------------------------------------------------------------------- 186 (295)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred EEeCCCccCcccCCCCCCCCeEEecCcchHHHHHHHHhccCCCccccceeeeeceeEEEecccccccCCCCCceecccc-
Q 005034 501 FYMDPFVIGFQLNPTPMKMPGIIIPSPDDSKILLQYYNSSLERDEVTKKIIKFGAVACILGGLKANFSNSAPKIMYYSA- 579 (718)
Q Consensus 501 ~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~fSs- 579 (718)
........|++
T Consensus 187 --------------------------------------------------------------------~~~~~~~~~~s~ 198 (295)
T cd07474 187 --------------------------------------------------------------------AEADTVGPSSSR 198 (295)
T ss_pred --------------------------------------------------------------------CCCCceeccCCC
Confidence 00011233444
Q ss_pred CCCCCCCCCCCCCCCCCCceeccCCceeecccCCCCCCccccCccccccCchhhhhHHHHHHHHHHHHhCCCCCHHHHHH
Q 005034 580 RGPDPEDSFLDDADIMKPNLVAPGNSIWAAWSSLGTDSVEFQGESFAMMSGTSMAAPHIAGLAALIKQKFPSFSPSAIAS 659 (718)
Q Consensus 580 ~Gpt~~~~~~~~~g~~KPDI~APG~~I~Sa~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~q~~p~ls~~~ik~ 659 (718)
.|++.. .++||||+|||.+|++++... ++.|..++|||||||+|||++|||+|++|+|++++||+
T Consensus 199 ~~~~~~-------~~~kpdv~apG~~i~~~~~~~--------~~~~~~~~GTS~AaP~vaG~aAll~~~~p~l~~~~v~~ 263 (295)
T cd07474 199 GPPTSD-------SAIKPDIVAPGVDIMSTAPGS--------GTGYARMSGTSMAAPHVAGAAALLKQAHPDWSPAQIKA 263 (295)
T ss_pred CCCCCC-------CCcCCCEECCcCceEeeccCC--------CCceEEeccHHHHHHHHHHHHHHHHhhCCCCCHHHHHH
Confidence 455554 699999999999999998432 25789999999999999999999999999999999999
Q ss_pred HHHhcccccccCCCccccccccCCCCCCCCCCCCCcccccccccccc
Q 005034 660 ALSTSATLYDKNGGPIMAQRAYAKPDENQSPATPFDMGSGFVNATAS 706 (718)
Q Consensus 660 ~L~~TA~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~G~vn~~~A 706 (718)
+|++||++....+. ..+++..+|+|+||+.+|
T Consensus 264 ~L~~tA~~~~~~~~---------------~~~~~~~~G~G~l~~~~A 295 (295)
T cd07474 264 ALMNTAKPLYDSDG---------------VVYPVSRQGAGRVDALRA 295 (295)
T ss_pred HHHhhCcccccCCC---------------CcCChhccCcceeccccC
Confidence 99999998765432 112456899999999987
No 13
>cd07493 Peptidases_S8_9 Peptidase S8 family domain, uncharacterized subfamily 9. This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values.
Probab=100.00 E-value=2e-45 Score=381.15 Aligned_cols=247 Identities=28% Similarity=0.360 Sum_probs=198.8
Q ss_pred CcEEEEEccccCCCCCCCcCCCCCCCCCCCCCCCccccccCCCCCCCCCceeeeeeecchhhhhcCccCCCCCCCC-CCC
Q 005034 188 GVVIGFIDTGIDPTHPSFADDASEHSYPVPSHFSGICEVTRDFPSGSCNRKLIGARHFAASAITRGIFNSSQDYAS-PFD 266 (718)
Q Consensus 188 gv~VaVIDtGid~~Hp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~-~~d 266 (718)
||+||||||||+++||+|..... ..+.++.+.++|.+. ... ..|
T Consensus 1 Gv~VaviDsGi~~~h~~~~~~~~-----------------------~~~~~i~~~~~~~~~------------~~~~~~~ 45 (261)
T cd07493 1 GITIAVIDAGFPKVHEAFAFKHL-----------------------FKNLRILGEYDFVDN------------SNNTNYT 45 (261)
T ss_pred CCEEEEEccCCCccCcchhhhcc-----------------------ccCCceeeeecCccC------------CCCCCCC
Confidence 79999999999999999963222 112356666666543 112 357
Q ss_pred CCCCccccccccccCCCCCccccccccCccccccCCceEEEEeecccCCC--CCHHHHHHHHHHHHHCCCCEEEEcCCCC
Q 005034 267 GDGHGSHTASVAAGNHGIPVVVTGHHFGNASGMAPRSHIAVYKALYKSFG--GFAADVVAAIDQAAQDGVDIISLSITPN 344 (718)
Q Consensus 267 ~~gHGThVAGiiag~~~~~~~~~g~~~~~~~GvAp~A~i~~~kv~~~~~~--~~~~~i~~ai~~a~~~g~~ViN~S~G~~ 344 (718)
..+|||||||+|+|..+ +.+.||||+|+|+.+|+...... .....++.+++|+.+++++|||||||..
T Consensus 46 ~~~HGT~vagiia~~~~----------~~~~GvAp~a~l~~~~~~~~~~~~~~~~~~~~~ai~~a~~~~v~VIn~S~G~~ 115 (261)
T cd07493 46 DDDHGTAVLSTMAGYTP----------GVMVGTAPNASYYLARTEDVASETPVEEDNWVAAAEWADSLGVDIISSSLGYT 115 (261)
T ss_pred CCCchhhhheeeeeCCC----------CCEEEeCCCCEEEEEEecccCCcccccHHHHHHHHHHHHHcCCCEEEeCCCcC
Confidence 88999999999999853 24579999999999998754222 3456789999999999999999999976
Q ss_pred CCCCC--------CCccccHHHHHHHHHHHCCCEEEEecCCCCCC---CCCCCCCCCceEEEeeeccCCceeeeEEeCCC
Q 005034 345 RRPPG--------IATFFNPIDMALLSAAKAGIFVVQAAGNTGPS---PKSMSSFSPWIFTVGAASHDRIYTNSIILGNS 413 (718)
Q Consensus 345 ~~~~~--------~~~~~~~~~~a~~~a~~~GilvV~AAGN~g~~---~~~~~~~~~~vitVgA~~~~~~~~~~~~~~~~ 413 (718)
..... .......+.++++.+.++|++||+||||+|.. ...+|+..+++|+|||++.+
T Consensus 116 ~~~~~~~~~~~~~~~~~~~~l~~a~~~a~~~gilvv~AAGN~g~~~~~~~~~Pa~~~~vi~Vga~~~~------------ 183 (261)
T cd07493 116 TFDNPTYSYTYADMDGKTSFISRAANIAASKGMLVVNSAGNEGSTQWKGIGAPADAENVLSVGAVDAN------------ 183 (261)
T ss_pred CCCCcccccccccccccchHHHHHHHHHHhCCeEEEEECCCCCCCCCCcccCcccCCceEEEEEeccC------------
Confidence 53321 11123567888999999999999999999987 45678889999999986422
Q ss_pred ceEeeeccCCCCCceEEEEEcccccCCCCcccCCccccccCCCCCCccCCcCceEEEEEeecccccCcchHHHHHHHHHh
Q 005034 414 LTISGVGLAPGTDKMYTLISALHALNNNTTTTDDMYVGECQDSSNFNQDLVQGNLLICSYSIRFVLGLSTIKQAFETAKN 493 (718)
Q Consensus 414 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~g~i~~~~~~~~~~~~~~~~~~~~~~~~~ 493 (718)
T Consensus 184 -------------------------------------------------------------------------------- 183 (261)
T cd07493 184 -------------------------------------------------------------------------------- 183 (261)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCcEEEEEeCCCccCcccCCCCCCCCeEEecCcchHHHHHHHHhccCCCccccceeeeeceeEEEecccccccCCCCCc
Q 005034 494 LSAAGIVFYMDPFVIGFQLNPTPMKMPGIIIPSPDDSKILLQYYNSSLERDEVTKKIIKFGAVACILGGLKANFSNSAPK 573 (718)
Q Consensus 494 ~ga~~vi~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 573 (718)
+.
T Consensus 184 ------------------------------------------------------------------------------~~ 185 (261)
T cd07493 184 ------------------------------------------------------------------------------GN 185 (261)
T ss_pred ------------------------------------------------------------------------------CC
Confidence 13
Q ss_pred eeccccCCCCCCCCCCCCCCCCCCceeccCCceeecccCCCCCCccccCccccccCchhhhhHHHHHHHHHHHHhCCCCC
Q 005034 574 IMYYSARGPDPEDSFLDDADIMKPNLVAPGNSIWAAWSSLGTDSVEFQGESFAMMSGTSMAAPHIAGLAALIKQKFPSFS 653 (718)
Q Consensus 574 ~a~fSs~Gpt~~~~~~~~~g~~KPDI~APG~~I~Sa~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~q~~p~ls 653 (718)
++.||++||+.+ +++||||+|||.+|++.. ..+.|..++|||||||+|||++|||+|++|+|+
T Consensus 186 ~~~~S~~G~~~~-------~~~~pdi~a~G~~~~~~~----------~~~~~~~~sGTS~AaP~vaG~aAll~~~~p~lt 248 (261)
T cd07493 186 KASFSSIGPTAD-------GRLKPDVMALGTGIYVIN----------GDGNITYANGTSFSCPLIAGLIACLWQAHPNWT 248 (261)
T ss_pred CCccCCcCCCCC-------CCcCCceEecCCCeEEEc----------CCCcEEeeCcHHHHHHHHHHHHHHHHHHCCCCC
Confidence 577899999986 799999999999999855 456889999999999999999999999999999
Q ss_pred HHHHHHHHHhccc
Q 005034 654 PSAIASALSTSAT 666 (718)
Q Consensus 654 ~~~ik~~L~~TA~ 666 (718)
+.|||++|++||+
T Consensus 249 ~~~i~~~l~~tA~ 261 (261)
T cd07493 249 NLQIKEAILKSAS 261 (261)
T ss_pred HHHHHHHHHHhcC
Confidence 9999999999985
No 14
>cd07481 Peptidases_S8_BacillopeptidaseF-like Peptidase S8 family domain in BacillopeptidaseF-like proteins. Bacillus subtilis produces and secretes proteases and other types of exoenzymes at the end of the exponential phase of growth. The ones that make up this group is known as bacillopeptidase F, encoded by bpr, a serine protease with high esterolytic activity which is inhibited by PMSF. Like other members of the peptidases S8 family these have a Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of these enzymes may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity.
Probab=100.00 E-value=2.9e-45 Score=380.51 Aligned_cols=247 Identities=33% Similarity=0.463 Sum_probs=197.3
Q ss_pred CCCcEEEEEccccCCCCCCCcCCCCCCCCCCCCCCCccccccCCCCCCCCCceeeeeeecchhhhhcCccCCCCCCCCCC
Q 005034 186 GEGVVIGFIDTGIDPTHPSFADDASEHSYPVPSHFSGICEVTRDFPSGSCNRKLIGARHFAASAITRGIFNSSQDYASPF 265 (718)
Q Consensus 186 G~gv~VaVIDtGid~~Hp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~ 265 (718)
|+||+|||||+||+++||+|.++.. .|... .+...+++ ++.......+.
T Consensus 1 G~GV~VaViDsGi~~~hp~l~~~~~--------~~~~~--------------~~~~~~~~---------~d~~~~~~~~~ 49 (264)
T cd07481 1 GTGIVVANIDTGVDWTHPALKNKYR--------GWGGG--------------SADHDYNW---------FDPVGNTPLPY 49 (264)
T ss_pred CCCcEEEEEeCCCCCCChhHhhccc--------ccCCC--------------Cccccccc---------ccCCCCCCCCC
Confidence 8999999999999999999997522 00000 00000000 11111234556
Q ss_pred CCCCCccccccccccCCCCCccccccccCccccccCCceEEEEeecccCCCCCHHHHHHHHHHHHH------------CC
Q 005034 266 DGDGHGSHTASVAAGNHGIPVVVTGHHFGNASGMAPRSHIAVYKALYKSFGGFAADVVAAIDQAAQ------------DG 333 (718)
Q Consensus 266 d~~gHGThVAGiiag~~~~~~~~~g~~~~~~~GvAp~A~i~~~kv~~~~~~~~~~~i~~ai~~a~~------------~g 333 (718)
|..+|||||||||+|..... ...||||+|+|+.+|+++... +...+++++++|+++ .+
T Consensus 50 d~~~HGT~vagii~g~~~~~---------~~~GvAp~a~i~~~~~~~~~~-~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 119 (264)
T cd07481 50 DDNGHGTHTMGTMVGNDGDG---------QQIGVAPGARWIACRALDRNG-GNDADYLRCAQWMLAPTDSAGNPADPDLA 119 (264)
T ss_pred CCCCchhhhhhheeecCCCC---------CceEECCCCeEEEEEeecCCC-CcHHHHHHHHHHHHhcccccccccccccC
Confidence 78899999999999875432 237999999999999998744 778899999999975 68
Q ss_pred CCEEEEcCCCCCCCCCCCccccHHHHHHHHHHHCCCEEEEecCCCCCCCCC---CCCCCCceEEEeeeccCCceeeeEEe
Q 005034 334 VDIISLSITPNRRPPGIATFFNPIDMALLSAAKAGIFVVQAAGNTGPSPKS---MSSFSPWIFTVGAASHDRIYTNSIIL 410 (718)
Q Consensus 334 ~~ViN~S~G~~~~~~~~~~~~~~~~~a~~~a~~~GilvV~AAGN~g~~~~~---~~~~~~~vitVgA~~~~~~~~~~~~~ 410 (718)
++|||||||.... ....+..+++.+.++|++||+||||++..... +|+..+++|+||+++.+
T Consensus 120 ~~Iin~S~G~~~~------~~~~~~~~~~~~~~~gvlvV~aaGN~~~~~~~~~~~pa~~~~vi~Vga~~~~--------- 184 (264)
T cd07481 120 PDVINNSWGGPSG------DNEWLQPAVAAWRAAGIFPVFAAGNDGPRCSTLNAPPANYPESFAVGATDRN--------- 184 (264)
T ss_pred CeEEEeCCCcCCC------CchHHHHHHHHHHHCCCEEEEECCCCCCCCCCCcCCCCcCCceEEEEecCCC---------
Confidence 9999999997643 23567788888999999999999999876443 67778999999986422
Q ss_pred CCCceEeeeccCCCCCceEEEEEcccccCCCCcccCCccccccCCCCCCccCCcCceEEEEEeecccccCcchHHHHHHH
Q 005034 411 GNSLTISGVGLAPGTDKMYTLISALHALNNNTTTTDDMYVGECQDSSNFNQDLVQGNLLICSYSIRFVLGLSTIKQAFET 490 (718)
Q Consensus 411 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~g~i~~~~~~~~~~~~~~~~~~~~~~ 490 (718)
T Consensus 185 -------------------------------------------------------------------------------- 184 (264)
T cd07481 185 -------------------------------------------------------------------------------- 184 (264)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHhCCCcEEEEEeCCCccCcccCCCCCCCCeEEecCcchHHHHHHHHhccCCCccccceeeeeceeEEEecccccccCCC
Q 005034 491 AKNLSAAGIVFYMDPFVIGFQLNPTPMKMPGIIIPSPDDSKILLQYYNSSLERDEVTKKIIKFGAVACILGGLKANFSNS 570 (718)
Q Consensus 491 ~~~~ga~~vi~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 570 (718)
T Consensus 185 -------------------------------------------------------------------------------- 184 (264)
T cd07481 185 -------------------------------------------------------------------------------- 184 (264)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCceeccccCCCCCCCCCCCCCCCCCCceeccCCceeecccCCCCCCccccCccccccCchhhhhHHHHHHHHHHHHhCC
Q 005034 571 APKIMYYSARGPDPEDSFLDDADIMKPNLVAPGNSIWAAWSSLGTDSVEFQGESFAMMSGTSMAAPHIAGLAALIKQKFP 650 (718)
Q Consensus 571 ~~~~a~fSs~Gpt~~~~~~~~~g~~KPDI~APG~~I~Sa~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~q~~p 650 (718)
+.++.||++||... ++.||||+|||.+|+++. +++.|..++|||||||+|||++|||+|++|
T Consensus 185 -~~~~~~S~~g~~~~-------~~~~~dv~ApG~~i~s~~----------~~~~~~~~~GTS~AaP~vaG~aAll~~~~p 246 (264)
T cd07481 185 -DVLADFSSRGPSTY-------GRIKPDISAPGVNIRSAV----------PGGGYGSSSGTSMAAPHVAGVAALLWSANP 246 (264)
T ss_pred -CCCccccCCCCCCC-------CCcCceEEECCCCeEEec----------CCCceEeeCcHHHHHHHHHHHHHHHHHhCC
Confidence 23578999999986 699999999999999998 556899999999999999999999999999
Q ss_pred C--CCHHHHHHHHHhccc
Q 005034 651 S--FSPSAIASALSTSAT 666 (718)
Q Consensus 651 ~--ls~~~ik~~L~~TA~ 666 (718)
+ ++++|||.+|++||+
T Consensus 247 ~~~l~~~~v~~~L~~tA~ 264 (264)
T cd07481 247 SLIGDVDATEAILTETAR 264 (264)
T ss_pred CCCCCHHHHHHHHHHhcC
Confidence 9 999999999999985
No 15
>cd04857 Peptidases_S8_Tripeptidyl_Aminopeptidase_II Peptidase S8 family domain in Tripeptidyl aminopeptidases_II. Tripeptidyl aminopeptidases II are member of the peptidase S8 or Subtilase family. Subtilases, or subtilisin-like serine proteases, have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure (an example of convergent evolution). Tripeptidyl aminopeptidase II removes tripeptides from the free N terminus of oligopeptides as well as having endoproteolytic activity. Some tripeptidyl aminopeptidases have been shown to cleave tripeptides and small peptides, e.g. angiotensin II and glucagon, while others are believed to be involved in MHC I processing.
Probab=100.00 E-value=2.3e-44 Score=384.89 Aligned_cols=220 Identities=25% Similarity=0.372 Sum_probs=166.4
Q ss_pred CCCCCccccccccccCCCCCccccccccCccccccCCceEEEEeecccCCCC--CHHHHHHHHHHHHHCCCCEEEEcCCC
Q 005034 266 DGDGHGSHTASVAAGNHGIPVVVTGHHFGNASGMAPRSHIAVYKALYKSFGG--FAADVVAAIDQAAQDGVDIISLSITP 343 (718)
Q Consensus 266 d~~gHGThVAGiiag~~~~~~~~~g~~~~~~~GvAp~A~i~~~kv~~~~~~~--~~~~i~~ai~~a~~~g~~ViN~S~G~ 343 (718)
|+.+|||||||||+|+..++ ..+.||||+|+|+.+|+++...+. ...++++||++|++.+++|||||||.
T Consensus 183 d~~gHGThVAGIIAg~~~~~--------~~~~GVAP~A~I~svkv~d~~~gs~~t~~~l~~ai~~ai~~gadVIN~SlG~ 254 (412)
T cd04857 183 DSGAHGTHVAGIAAAHFPEE--------PERNGVAPGAQIVSIKIGDTRLGSMETGTALVRAMIAAIETKCDLINMSYGE 254 (412)
T ss_pred CCCCCHHHHHHHHhCCCCCC--------CceEEecCCCeEEEEEeccCCCCCccchHHHHHHHHHHHHcCCCEEEecCCc
Confidence 67799999999999985332 356899999999999998753332 23579999999999999999999998
Q ss_pred CCCCCCCCccccHHHHHH-HHHHHCCCEEEEecCCCCCCCCCC--CC-CCCceEEEeeeccCCceeeeEEeCCCceEeee
Q 005034 344 NRRPPGIATFFNPIDMAL-LSAAKAGIFVVQAAGNTGPSPKSM--SS-FSPWIFTVGAASHDRIYTNSIILGNSLTISGV 419 (718)
Q Consensus 344 ~~~~~~~~~~~~~~~~a~-~~a~~~GilvV~AAGN~g~~~~~~--~~-~~~~vitVgA~~~~~~~~~~~~~~~~~~~~~~ 419 (718)
....... ..+.+++ +.+.++|++||+||||+|....+. |+ ..++||+|||+.........
T Consensus 255 ~~~~~~~----~~~~~~~~~~~~~~GVlvVaAAGN~G~~~~tv~~P~~~~~~VIsVGA~~~~~~~~~~------------ 318 (412)
T cd04857 255 ATHWPNS----GRIIELMNEAVNKHGVIFVSSAGNNGPALSTVGAPGGTTSSVIGVGAYVSPEMMAAE------------ 318 (412)
T ss_pred CCCCccc----hHHHHHHHHHHHhCCCEEEEECCCCCCCccccCCccccCCCeEEEcceeccCccccc------------
Confidence 6543211 1233333 334578999999999999876553 43 47899999996432210000
Q ss_pred ccCCCCCceEEEEEcccccCCCCcccCCccccccCCCCCCccCCcCceEEEEEeecccccCcchHHHHHHHHHhCCCcEE
Q 005034 420 GLAPGTDKMYTLISALHALNNNTTTTDDMYVGECQDSSNFNQDLVQGNLLICSYSIRFVLGLSTIKQAFETAKNLSAAGI 499 (718)
Q Consensus 420 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~g~i~~~~~~~~~~~~~~~~~~~~~~~~~~ga~~v 499 (718)
|.+
T Consensus 319 ---------y~~-------------------------------------------------------------------- 321 (412)
T cd04857 319 ---------YSL-------------------------------------------------------------------- 321 (412)
T ss_pred ---------ccc--------------------------------------------------------------------
Confidence 000
Q ss_pred EEEeCCCccCcccCCCCCCCCeEEecCcchHHHHHHHHhccCCCccccceeeeeceeEEEecccccccCCCCCceecccc
Q 005034 500 VFYMDPFVIGFQLNPTPMKMPGIIIPSPDDSKILLQYYNSSLERDEVTKKIIKFGAVACILGGLKANFSNSAPKIMYYSA 579 (718)
Q Consensus 500 i~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~fSs 579 (718)
.....+.++.|||
T Consensus 322 -------------------------------------------------------------------~~~~~~~~~~fSS 334 (412)
T cd04857 322 -------------------------------------------------------------------REKLPGNQYTWSS 334 (412)
T ss_pred -------------------------------------------------------------------ccccCCccccccc
Confidence 0011245789999
Q ss_pred CCCCCCCCCCCCCCCCCCceeccCCceeecccCCCCCCccccCccccccCchhhhhHHHHHHHHHHHH----hCCCCCHH
Q 005034 580 RGPDPEDSFLDDADIMKPNLVAPGNSIWAAWSSLGTDSVEFQGESFAMMSGTSMAAPHIAGLAALIKQ----KFPSFSPS 655 (718)
Q Consensus 580 ~Gpt~~~~~~~~~g~~KPDI~APG~~I~Sa~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~q----~~p~ls~~ 655 (718)
|||+.+ |++||||+|||..|.|.-. . ....|..|+|||||||||||++|||++ ++|+++|.
T Consensus 335 rGP~~d-------G~~~pdI~APG~~I~s~p~-~-------~~~~~~~~sGTSmAaP~VAG~aALllSa~k~~~~~~tp~ 399 (412)
T cd04857 335 RGPTAD-------GALGVSISAPGGAIASVPN-W-------TLQGSQLMNGTSMSSPNACGGIALLLSGLKAEGIPYTPY 399 (412)
T ss_pred cCCccc-------CCcCceEEeCCCcEEEccc-C-------CCCCeEEecccHHHHHHHHHHHHHHHhhhhhcCCCCCHH
Confidence 999997 8999999999999988521 1 234789999999999999999999985 56899999
Q ss_pred HHHHHHHhccccc
Q 005034 656 AIASALSTSATLY 668 (718)
Q Consensus 656 ~ik~~L~~TA~~~ 668 (718)
+||++|++||+++
T Consensus 400 ~Vk~aL~~TA~~~ 412 (412)
T cd04857 400 SVRRALENTAKKL 412 (412)
T ss_pred HHHHHHHHhCccC
Confidence 9999999999864
No 16
>cd07487 Peptidases_S8_1 Peptidase S8 family domain, uncharacterized subfamily 1. This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values.
Probab=100.00 E-value=4.3e-44 Score=372.40 Aligned_cols=258 Identities=35% Similarity=0.573 Sum_probs=207.6
Q ss_pred CCCcEEEEEccccCCCCCCCcCCCCCCCCCCCCCCCccccccCCCCCCCCCceeeeeeecchhhhhcCccCCCCCCCCCC
Q 005034 186 GEGVVIGFIDTGIDPTHPSFADDASEHSYPVPSHFSGICEVTRDFPSGSCNRKLIGARHFAASAITRGIFNSSQDYASPF 265 (718)
Q Consensus 186 G~gv~VaVIDtGid~~Hp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~ 265 (718)
|+||+|+|||+||+++||+|.+.... .+. +. ..........
T Consensus 1 G~gv~VaviDsGv~~~h~~l~~~~~~-------~~~-----------------------~~---------~~~~~~~~~~ 41 (264)
T cd07487 1 GKGITVAVLDTGIDAPHPDFDGRIIR-------FAD-----------------------FV---------NTVNGRTTPY 41 (264)
T ss_pred CCCcEEEEEeCCCCCCCccccccccc-------ccc-----------------------cc---------ccccCCCCCC
Confidence 89999999999999999999986540 000 00 0001123455
Q ss_pred CCCCCccccccccccCCCCCccccccccCccccccCCceEEEEeecccCCCCCHHHHHHHHHHHHHC----CCCEEEEcC
Q 005034 266 DGDGHGSHTASVAAGNHGIPVVVTGHHFGNASGMAPRSHIAVYKALYKSFGGFAADVVAAIDQAAQD----GVDIISLSI 341 (718)
Q Consensus 266 d~~gHGThVAGiiag~~~~~~~~~g~~~~~~~GvAp~A~i~~~kv~~~~~~~~~~~i~~ai~~a~~~----g~~ViN~S~ 341 (718)
|..+|||||||+|+|..++. ...+.||||+|+|+.+|+++....+...+++++|+|+++. +++||||||
T Consensus 42 d~~~HGT~vAgiiag~~~~~-------~~~~~Giap~a~i~~~~v~~~~~~~~~~~~~~ai~~~~~~~~~~~~~Iin~S~ 114 (264)
T cd07487 42 DDNGHGTHVAGIIAGSGRAS-------NGKYKGVAPGANLVGVKVLDDSGSGSESDIIAGIDWVVENNEKYNIRVVNLSL 114 (264)
T ss_pred CCCCchHHHHHHHhcCCccc-------CCceEEECCCCeEEEEEeecCCCCccHHHHHHHHHHHHhhccccCceEEEecc
Confidence 77899999999999986432 1346899999999999999986668889999999999998 999999999
Q ss_pred CCCCCCCCCCccccHHHHHHHHHHHCCCEEEEecCCCCCCCC--CCCCCCCceEEEeeeccCCceeeeEEeCCCceEeee
Q 005034 342 TPNRRPPGIATFFNPIDMALLSAAKAGIFVVQAAGNTGPSPK--SMSSFSPWIFTVGAASHDRIYTNSIILGNSLTISGV 419 (718)
Q Consensus 342 G~~~~~~~~~~~~~~~~~a~~~a~~~GilvV~AAGN~g~~~~--~~~~~~~~vitVgA~~~~~~~~~~~~~~~~~~~~~~ 419 (718)
|..... ......+.++++.+.++|++||+||||++.... .+|+..+++|+|||++.+...
T Consensus 115 g~~~~~---~~~~~~~~~~~~~~~~~gilvv~aaGN~~~~~~~~~~p~~~~~vi~Vga~~~~~~~--------------- 176 (264)
T cd07487 115 GAPPDP---SYGEDPLCQAVERLWDAGIVVVVAAGNSGPGPGTITSPGNSPKVITVGAVDDNGPH--------------- 176 (264)
T ss_pred CCCCCC---CCCCCHHHHHHHHHHhCCCEEEEeCCCCCCCCCccCCcccCCCceEEEeccCCCCC---------------
Confidence 986543 335678889999999999999999999998765 667788999999997543210
Q ss_pred ccCCCCCceEEEEEcccccCCCCcccCCccccccCCCCCCccCCcCceEEEEEeecccccCcchHHHHHHHHHhCCCcEE
Q 005034 420 GLAPGTDKMYTLISALHALNNNTTTTDDMYVGECQDSSNFNQDLVQGNLLICSYSIRFVLGLSTIKQAFETAKNLSAAGI 499 (718)
Q Consensus 420 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~g~i~~~~~~~~~~~~~~~~~~~~~~~~~~ga~~v 499 (718)
T Consensus 177 -------------------------------------------------------------------------------- 176 (264)
T cd07487 177 -------------------------------------------------------------------------------- 176 (264)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred EEEeCCCccCcccCCCCCCCCeEEecCcchHHHHHHHHhccCCCccccceeeeeceeEEEecccccccCCCCCceecccc
Q 005034 500 VFYMDPFVIGFQLNPTPMKMPGIIIPSPDDSKILLQYYNSSLERDEVTKKIIKFGAVACILGGLKANFSNSAPKIMYYSA 579 (718)
Q Consensus 500 i~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~fSs 579 (718)
...++.||+
T Consensus 177 -----------------------------------------------------------------------~~~~~~~s~ 185 (264)
T cd07487 177 -----------------------------------------------------------------------DDGISYFSS 185 (264)
T ss_pred -----------------------------------------------------------------------Ccccccccc
Confidence 013578999
Q ss_pred CCCCCCCCCCCCCCCCCCceeccCCceeecccCCCCCCccccCccccccCchhhhhHHHHHHHHHHHHhCCCCCHHHHHH
Q 005034 580 RGPDPEDSFLDDADIMKPNLVAPGNSIWAAWSSLGTDSVEFQGESFAMMSGTSMAAPHIAGLAALIKQKFPSFSPSAIAS 659 (718)
Q Consensus 580 ~Gpt~~~~~~~~~g~~KPDI~APG~~I~Sa~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~q~~p~ls~~~ik~ 659 (718)
+||+.+ ++.||||+|||.+|++..+..... ....++.|..++|||||||+|||++|||+|++|.+++++||+
T Consensus 186 ~G~~~~-------~~~~~di~apG~~i~~~~~~~~~~-~~~~~~~~~~~~GTS~Aap~vaG~~All~~~~p~~~~~~ik~ 257 (264)
T cd07487 186 RGPTGD-------GRIKPDVVAPGENIVSCRSPGGNP-GAGVGSGYFEMSGTSMATPHVSGAIALLLQANPILTPDEVKC 257 (264)
T ss_pred CCCCCC-------CCcCCCEEccccceEecccccccc-CCCCCCceEeccccchHHHHHHHHHHHHHHHCcCCCHHHHHH
Confidence 999987 799999999999999986432111 112456889999999999999999999999999999999999
Q ss_pred HHHhccc
Q 005034 660 ALSTSAT 666 (718)
Q Consensus 660 ~L~~TA~ 666 (718)
+|++||+
T Consensus 258 ~L~~tA~ 264 (264)
T cd07487 258 ILRDTAT 264 (264)
T ss_pred HHHhhcC
Confidence 9999985
No 17
>cd07485 Peptidases_S8_Fervidolysin_like Peptidase S8 family domain in Fervidolysin. Fervidolysin found in Fervidobacterium pennivorans is an extracellular subtilisin-like keratinase. It is contains a signal peptide, a propeptide, and a catalytic region. The tertiary structure of fervidolysin is similar to that of subtilisin. It contains a Asp/His/Ser catalytic triad and is a member of the peptidase S8 (subtilisin and kexin) family. The catalytic triad is similar to that found in trypsin-like proteases, but it does not share their three-dimensional structure and are not homologous to trypsin. Serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base. The S53 family contains a catalytic triad Glu/Asp/Ser with an additional acidic residue Asp in the oxyanion hole, similar to that of subtilisin. The serine residue here is the nucleophilic equivalent of the serine residue in the S8 family, while glutamic acid has the same role here as the histidine base. Howev
Probab=100.00 E-value=2.7e-43 Score=367.57 Aligned_cols=263 Identities=29% Similarity=0.405 Sum_probs=201.6
Q ss_pred cccccCCCCCCCCCcEEEEEccccCCCCCCCcCCCCCCCCCCCCCCCccccccCCCCCCCCCceeeeeeecchhhhhcCc
Q 005034 175 AWIQEGGYETAGEGVVIGFIDTGIDPTHPSFADDASEHSYPVPSHFSGICEVTRDFPSGSCNRKLIGARHFAASAITRGI 254 (718)
Q Consensus 175 ~w~~~~~~~~~G~gv~VaVIDtGid~~Hp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~ 254 (718)
+|.. +++|+||+|+|||||||++||+|.+......+.. ....+.+..
T Consensus 2 aw~~----g~~G~gv~IaviDtGid~~Hp~~~~~~~~~~~~~----------------------~~~~~~~~~------- 48 (273)
T cd07485 2 AWEF----GTGGPGIIVAVVDTGVDGTHPDLQGNGDGDGYDP----------------------AVNGYNFVP------- 48 (273)
T ss_pred cccc----ccCCCCcEEEEEeCCCCCCChhhccCCCCCCccc----------------------ccCCccccc-------
Confidence 5666 7999999999999999999999998722011100 000000000
Q ss_pred cCCCCCCCCCCCCCCCccccccccccCCCCCccccccccCccccccCCceEEEEeecccCCCCCHHHHHHHHHHHHHCCC
Q 005034 255 FNSSQDYASPFDGDGHGSHTASVAAGNHGIPVVVTGHHFGNASGMAPRSHIAVYKALYKSFGGFAADVVAAIDQAAQDGV 334 (718)
Q Consensus 255 ~~~~~~~~~~~d~~gHGThVAGiiag~~~~~~~~~g~~~~~~~GvAp~A~i~~~kv~~~~~~~~~~~i~~ai~~a~~~g~ 334 (718)
..........|..+|||||||||+|..++.....|. ..+.|+||+|+|+.+|++..........++++|+|+++.|+
T Consensus 49 -~~~~~~~~~~~~~gHGT~VAgiia~~~~~~~~~g~i--~~~~gvap~a~l~~~~v~~~~~~~~~~~~~~ai~~a~~~g~ 125 (273)
T cd07485 49 -NVGDIDNDVSVGGGHGTHVAGTIAAVNNNGGGVGGI--AGAGGVAPGVKIMSIQIFAGRYYVGDDAVAAAIVYAADNGA 125 (273)
T ss_pred -ccCCcCCCCCCCCCCHHHHHHHHHcccCCCcceecc--ccccccCCCCEEEEEEEECCCCCccHHHHHHHHHHHHHcCC
Confidence 000112334577899999999999976543222211 13457999999999999998666788889999999999999
Q ss_pred CEEEEcCCCCCCCCCCCccccHHHHHHHHHHHC-------CCEEEEecCCCCCCCCCCCCCCCceEEEeeeccCCceeee
Q 005034 335 DIISLSITPNRRPPGIATFFNPIDMALLSAAKA-------GIFVVQAAGNTGPSPKSMSSFSPWIFTVGAASHDRIYTNS 407 (718)
Q Consensus 335 ~ViN~S~G~~~~~~~~~~~~~~~~~a~~~a~~~-------GilvV~AAGN~g~~~~~~~~~~~~vitVgA~~~~~~~~~~ 407 (718)
+|||||||.... ..+...+.++++.+.++ |++||+||||++.....+|+..+++|+||+++.+
T Consensus 126 ~Vin~S~g~~~~----~~~~~~~~~a~~~~~~~~~~~~~~g~lvv~AaGN~g~~~~~~pa~~~~vi~V~a~~~~------ 195 (273)
T cd07485 126 VILQNSWGGTGG----GIYSPLLKDAFDYFIENAGGSPLDGGIVVFSAGNSYTDEHRFPAAYPGVIAVAALDTN------ 195 (273)
T ss_pred cEEEecCCCCCc----cccCHHHHHHHHHHHHhcccccCCCeEEEEecCCCCCCCCCCcccCCCeEEEEeccCC------
Confidence 999999997642 12446677888888888 9999999999999887778889999999986422
Q ss_pred EEeCCCceEeeeccCCCCCceEEEEEcccccCCCCcccCCccccccCCCCCCccCCcCceEEEEEeecccccCcchHHHH
Q 005034 408 IILGNSLTISGVGLAPGTDKMYTLISALHALNNNTTTTDDMYVGECQDSSNFNQDLVQGNLLICSYSIRFVLGLSTIKQA 487 (718)
Q Consensus 408 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~g~i~~~~~~~~~~~~~~~~~~~ 487 (718)
T Consensus 196 -------------------------------------------------------------------------------- 195 (273)
T cd07485 196 -------------------------------------------------------------------------------- 195 (273)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHhCCCcEEEEEeCCCccCcccCCCCCCCCeEEecCcchHHHHHHHHhccCCCccccceeeeeceeEEEeccccccc
Q 005034 488 FETAKNLSAAGIVFYMDPFVIGFQLNPTPMKMPGIIIPSPDDSKILLQYYNSSLERDEVTKKIIKFGAVACILGGLKANF 567 (718)
Q Consensus 488 ~~~~~~~ga~~vi~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 567 (718)
T Consensus 196 -------------------------------------------------------------------------------- 195 (273)
T cd07485 196 -------------------------------------------------------------------------------- 195 (273)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCCCceeccccCCCCCCCCCCCCCCCCCCceeccCC-ceeecccCCCCCCccccCccccccCchhhhhHHHHHHHHHHH
Q 005034 568 SNSAPKIMYYSARGPDPEDSFLDDADIMKPNLVAPGN-SIWAAWSSLGTDSVEFQGESFAMMSGTSMAAPHIAGLAALIK 646 (718)
Q Consensus 568 ~~~~~~~a~fSs~Gpt~~~~~~~~~g~~KPDI~APG~-~I~Sa~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~ 646 (718)
+.++.||++|+.. ||+|||. .|+++.+.... ...+.|..++|||||||+|||++|||+
T Consensus 196 ----~~~~~~S~~g~~~-------------~i~apG~~~i~~~~~~~~~----~~~~~~~~~sGTS~AaP~VaG~aAll~ 254 (273)
T cd07485 196 ----DNKASFSNYGRWV-------------DIAAPGVGTILSTVPKLDG----DGGGNYEYLSGTSMAAPHVSGVAALVL 254 (273)
T ss_pred ----CCcCccccCCCce-------------EEEeCCCCccccccccccC----CCCCCeEeeccHHHHHHHHHHHHHHHH
Confidence 2356789999876 8999999 89888753321 124578999999999999999999999
Q ss_pred HhCCC-CCHHHHHHHHHhc
Q 005034 647 QKFPS-FSPSAIASALSTS 664 (718)
Q Consensus 647 q~~p~-ls~~~ik~~L~~T 664 (718)
|++|. ++++|||++|++|
T Consensus 255 ~~~~~~~~~~~i~~~L~~T 273 (273)
T cd07485 255 SKFPDVFTPEQIRKLLEES 273 (273)
T ss_pred HhCCCCCCHHHHHHHHHhC
Confidence 99999 9999999999986
No 18
>cd04847 Peptidases_S8_Subtilisin_like_2 Peptidase S8 family domain in Subtilisin-like proteins. This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values.
Probab=100.00 E-value=8.8e-44 Score=374.75 Aligned_cols=263 Identities=24% Similarity=0.227 Sum_probs=191.4
Q ss_pred cEEEEEccccCCCCCCCcCCCCCCCCCCCCCCCccccccCCCCCCCCCceeeeeeecchhhhhcCccCCCCCCCCCCCCC
Q 005034 189 VVIGFIDTGIDPTHPSFADDASEHSYPVPSHFSGICEVTRDFPSGSCNRKLIGARHFAASAITRGIFNSSQDYASPFDGD 268 (718)
Q Consensus 189 v~VaVIDtGid~~Hp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~d~~ 268 (718)
.+|||||||||.+||+|.+... .+ ..+. . ......|..
T Consensus 1 p~VaviDtGi~~~hp~l~~~~~--------~~----------------------~~~~----------~--~~~~~~d~~ 38 (291)
T cd04847 1 PIVCVLDSGINRGHPLLAPALA--------ED----------------------DLDS----------D--EPGWTADDL 38 (291)
T ss_pred CEEEEecCCCCCCChhhhhhhc--------cc----------------------cccc----------c--CCCCcCCCC
Confidence 3799999999999999997644 00 0000 0 001146889
Q ss_pred CCccccccccccCCCCCccccccccCccccccCCceEEEEeecccCC----CCCHHHHHHHHHHHHHCC---CCEEEEcC
Q 005034 269 GHGSHTASVAAGNHGIPVVVTGHHFGNASGMAPRSHIAVYKALYKSF----GGFAADVVAAIDQAAQDG---VDIISLSI 341 (718)
Q Consensus 269 gHGThVAGiiag~~~~~~~~~g~~~~~~~GvAp~A~i~~~kv~~~~~----~~~~~~i~~ai~~a~~~g---~~ViN~S~ 341 (718)
+|||||||||++..... ....|+||+|+|+.+|++...+ ..+..+++++|+|+++++ ++||||||
T Consensus 39 gHGT~vAgiia~~~~~~--------~~~~gvap~~~l~~~kv~~~~g~~~~~~~~~~~~~ai~~a~~~~~~~~~ViN~Sl 110 (291)
T cd04847 39 GHGTAVAGLALYGDLTL--------PGNGLPRPGCRLESVRVLPPNGENDPELYGDITLRAIRRAVIQNPDIVRVFNLSL 110 (291)
T ss_pred CChHHHHHHHHcCcccC--------CCCCCcccceEEEEEEEcCCCCCCCccChHHHHHHHHHHHHHhCCCceeEEEEec
Confidence 99999999998764321 2457999999999999998753 356778999999999864 48999999
Q ss_pred CCCCCCCCCCccccHHHHHHH-HHHHCCCEEEEecCCCCCCCCC------------CCCCCCceEEEeeeccCCceeeeE
Q 005034 342 TPNRRPPGIATFFNPIDMALL-SAAKAGIFVVQAAGNTGPSPKS------------MSSFSPWIFTVGAASHDRIYTNSI 408 (718)
Q Consensus 342 G~~~~~~~~~~~~~~~~~a~~-~a~~~GilvV~AAGN~g~~~~~------------~~~~~~~vitVgA~~~~~~~~~~~ 408 (718)
|........ ....+..+++ .+.++|++||+||||++..... .|+.++++|+|||++.+.....+.
T Consensus 111 G~~~~~~~~--~~~~~~~~id~~a~~~gvlvV~aAGN~g~~~~~~~~~~~~~~~i~~Pa~~~~vItVgA~~~~~~~~~~s 188 (291)
T cd04847 111 GSPLPIDDG--RPSSWAAALDQLAAEYDVLFVVSAGNLGDDDAADGPPRIQDDEIEDPADSVNALTVGAITSDDDITDRA 188 (291)
T ss_pred CCCCCccCC--CCCcHHHHHHHHhccCCeEEEEECCCCCccccccccccccccccCCHHHhhhheeeeeeecCccCCCcc
Confidence 987543211 1124455553 3568999999999999987643 356688999999987654321110
Q ss_pred EeCCCceEeeeccCCCCCceEEEEEcccccCCCCcccCCccccccCCCCCCccCCcCceEEEEEeecccccCcchHHHHH
Q 005034 409 ILGNSLTISGVGLAPGTDKMYTLISALHALNNNTTTTDDMYVGECQDSSNFNQDLVQGNLLICSYSIRFVLGLSTIKQAF 488 (718)
Q Consensus 409 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~g~i~~~~~~~~~~~~~~~~~~~~ 488 (718)
.++
T Consensus 189 ~~~----------------------------------------------------------------------------- 191 (291)
T cd04847 189 RYS----------------------------------------------------------------------------- 191 (291)
T ss_pred ccc-----------------------------------------------------------------------------
Confidence 000
Q ss_pred HHHHhCCCcEEEEEeCCCccCcccCCCCCCCCeEEecCcchHHHHHHHHhccCCCccccceeeeeceeEEEecccccccC
Q 005034 489 ETAKNLSAAGIVFYMDPFVIGFQLNPTPMKMPGIIIPSPDDSKILLQYYNSSLERDEVTKKIIKFGAVACILGGLKANFS 568 (718)
Q Consensus 489 ~~~~~~ga~~vi~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 568 (718)
.
T Consensus 192 -------------------------------------------------------------------------------~ 192 (291)
T cd04847 192 -------------------------------------------------------------------------------A 192 (291)
T ss_pred -------------------------------------------------------------------------------c
Confidence 0
Q ss_pred CCCCceeccccCCCCCCCCCCCCCCCCCCceeccCCceeecccCCCCC--------CccccCccccccCchhhhhHHHHH
Q 005034 569 NSAPKIMYYSARGPDPEDSFLDDADIMKPNLVAPGNSIWAAWSSLGTD--------SVEFQGESFAMMSGTSMAAPHIAG 640 (718)
Q Consensus 569 ~~~~~~a~fSs~Gpt~~~~~~~~~g~~KPDI~APG~~I~Sa~~~~~~~--------~~~~~~~~y~~~sGTSmAaP~VAG 640 (718)
......+.||++||..+ +++||||+|||++|.+........ .....++.|..++|||||||||||
T Consensus 193 ~~~~~~~~fs~~Gp~~~-------~~~KPDl~apG~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~GTS~AaP~Vag 265 (291)
T cd04847 193 VGPAPAGATTSSGPGSP-------GPIKPDVVAFGGNLAYDPSGNAADGDLSLLTTLSSPSGGGFVTVGGTSFAAPLAAR 265 (291)
T ss_pred cccccCCCccccCCCCC-------CCcCCcEEeeCCceeecCCCCCccCcceeeecccCCCCCcccccccchHHHHHHHH
Confidence 00011234999999987 799999999999998865321100 011145689999999999999999
Q ss_pred HHHHHHHhCCCCCHHHHHHHHHhccc
Q 005034 641 LAALIKQKFPSFSPSAIASALSTSAT 666 (718)
Q Consensus 641 ~aALl~q~~p~ls~~~ik~~L~~TA~ 666 (718)
++|||+|++|++++++||++|++||+
T Consensus 266 ~aAll~~~~p~~t~~~ikalL~~sA~ 291 (291)
T cd04847 266 LAAGLFAELPELSPETIRALLIHSAE 291 (291)
T ss_pred HHHHHHHHCCCCCHHHHHHHHHhhcC
Confidence 99999999999999999999999985
No 19
>cd07494 Peptidases_S8_10 Peptidase S8 family domain, uncharacterized subfamily 10. This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values.
Probab=100.00 E-value=7e-43 Score=366.48 Aligned_cols=161 Identities=25% Similarity=0.304 Sum_probs=122.2
Q ss_pred cCCCcccccccCCCCCCCCCcEEEEEccccCCCCCCCcCCCCCCCCCCCCCCCccccccCCCCCCCCCceeeeeeecchh
Q 005034 169 LGLPQGAWIQEGGYETAGEGVVIGFIDTGIDPTHPSFADDASEHSYPVPSHFSGICEVTRDFPSGSCNRKLIGARHFAAS 248 (718)
Q Consensus 169 ~~~~~~~w~~~~~~~~~G~gv~VaVIDtGid~~Hp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~ 248 (718)
+++.. +|.. +++|+||+||||||||+..|| |..... .. +. .+..
T Consensus 8 l~~~~-~~~~----G~~G~Gv~VaViDTGv~~~h~-~~~~~~----------~~---------------~~----~~~~- 51 (298)
T cd07494 8 LNATR-VHQR----GITGRGVRVAMVDTGFYAHPF-FESRGY----------QV---------------RV----VLAP- 51 (298)
T ss_pred cChhH-HHhc----CCCCCCcEEEEEeCCCcCCch-hhcCCc----------cc---------------ee----ecCC-
Confidence 44444 6665 899999999999999999888 664322 00 00 0000
Q ss_pred hhhcCccCCCCCCCCCCCCCCCccccccccccCCCCCccccccccCccccccCCceEEEEeecccCCCCCHHHHHHHHHH
Q 005034 249 AITRGIFNSSQDYASPFDGDGHGSHTASVAAGNHGIPVVVTGHHFGNASGMAPRSHIAVYKALYKSFGGFAADVVAAIDQ 328 (718)
Q Consensus 249 ~~~~~~~~~~~~~~~~~d~~gHGThVAGiiag~~~~~~~~~g~~~~~~~GvAp~A~i~~~kv~~~~~~~~~~~i~~ai~~ 328 (718)
.......|+.|||||||+++ .||||+|+|+.+|+++. ...+++++|+|
T Consensus 52 ----------~~~~~~~D~~gHGT~vag~i------------------~GvAP~a~i~~vkv~~~----~~~~~~~ai~~ 99 (298)
T cd07494 52 ----------GATDPACDENGHGTGESANL------------------FAIAPGAQFIGVKLGGP----DLVNSVGAFKK 99 (298)
T ss_pred ----------CCCCCCCCCCCcchheeece------------------eEeCCCCeEEEEEccCC----CcHHHHHHHHH
Confidence 01123457889999999876 39999999999999875 45678999999
Q ss_pred HHHCCCCEEEEcCCCCCCCCC------CCccccHHHHHHHHHHHCCCEEEEecCCCCCCCCCCCCCCCceEEEeeecc
Q 005034 329 AAQDGVDIISLSITPNRRPPG------IATFFNPIDMALLSAAKAGIFVVQAAGNTGPSPKSMSSFSPWIFTVGAASH 400 (718)
Q Consensus 329 a~~~g~~ViN~S~G~~~~~~~------~~~~~~~~~~a~~~a~~~GilvV~AAGN~g~~~~~~~~~~~~vitVgA~~~ 400 (718)
|++++++|||||||....... .......++++++.+.++|++||+||||++. .+|+..|+||+|||++.
T Consensus 100 a~~~g~dVIn~SlG~~~~~~~~~~~~~~~~~~~al~~ai~~A~~~Gi~vVaAAGN~~~---~~Pa~~p~viaVga~~~ 174 (298)
T cd07494 100 AISLSPDIISNSWGYDLRSPGTSWSRSLPNALKALAATLQDAVARGIVVVFSAGNGGW---SFPAQHPEVIAAGGVFV 174 (298)
T ss_pred HHhcCCCEEEeecccCCCCcccccccccchhhHHHHHHHHHHHHCCcEEEEeCCCCCC---CcCCCCCCEEEEEeEec
Confidence 999999999999998643221 1123456889999999999999999999974 57999999999999753
No 20
>cd04077 Peptidases_S8_PCSK9_ProteinaseK_like Peptidase S8 family domain in ProteinaseK-like proteins. The peptidase S8 or Subtilase clan of proteases have a Asp/His/Ser catalytic triad that is not homologous to trypsin. This CD contains several members of this clan including: PCSK9 (Proprotein convertase subtilisin/kexin type 9), Proteinase_K, Proteinase_T, and other subtilisin-like serine proteases. PCSK9 posttranslationally regulates hepatic low-density lipoprotein receptors (LDLRs) by binding to LDLRs on the cell surface, leading to their degradation. The binding site of PCSK9 has been localized to the epidermal growth factor-like repeat A (EGF-A) domain of the LDLR. Characterized Proteinases K are secreted endopeptidases with a high degree of sequence conservation. Proteinases K are not substrate-specific and function in a wide variety of species in different pathways. It can hydrolyze keratin and other proteins with subtilisin-like specificity. The number of calcium-binding moti
Probab=100.00 E-value=5e-43 Score=362.22 Aligned_cols=229 Identities=32% Similarity=0.476 Sum_probs=193.5
Q ss_pred CCCCCCcEEEEEccccCCCCCCCcCCCCCCCCCCCCCCCccccccCCCCCCCCCceeeeeeecchhhhhcCccCCCCCCC
Q 005034 183 ETAGEGVVIGFIDTGIDPTHPSFADDASEHSYPVPSHFSGICEVTRDFPSGSCNRKLIGARHFAASAITRGIFNSSQDYA 262 (718)
Q Consensus 183 ~~~G~gv~VaVIDtGid~~Hp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~ 262 (718)
+++|+||+|||||+||+++||+|.++.. ..++|... .
T Consensus 21 ~~~G~gv~VaViDsGi~~~h~~~~~~~~------------------------------~~~~~~~~-------------~ 57 (255)
T cd04077 21 SSTGSGVDVYVLDTGIRTTHVEFGGRAI------------------------------WGADFVGG-------------D 57 (255)
T ss_pred CCCCCCcEEEEEcCCCCCCChhhhCCee------------------------------eeeecCCC-------------C
Confidence 6999999999999999999999987533 11111111 1
Q ss_pred CCCCCCCCccccccccccCCCCCccccccccCccccccCCceEEEEeecccCCCCCHHHHHHHHHHHHHC-----CCCEE
Q 005034 263 SPFDGDGHGSHTASVAAGNHGIPVVVTGHHFGNASGMAPRSHIAVYKALYKSFGGFAADVVAAIDQAAQD-----GVDII 337 (718)
Q Consensus 263 ~~~d~~gHGThVAGiiag~~~~~~~~~g~~~~~~~GvAp~A~i~~~kv~~~~~~~~~~~i~~ai~~a~~~-----g~~Vi 337 (718)
...|..+|||||||||+++. .||||+|+|+.+|+++....+..+.++.+++|+++. +++||
T Consensus 58 ~~~d~~~HGT~vAgiia~~~--------------~GvAp~a~i~~~~i~~~~~~~~~~~~~~ai~~~~~~~~~~~~~~ii 123 (255)
T cd04077 58 PDSDCNGHGTHVAGTVGGKT--------------YGVAKKANLVAVKVLDCNGSGTLSGIIAGLEWVANDATKRGKPAVA 123 (255)
T ss_pred CCCCCCccHHHHHHHHHccc--------------cCcCCCCeEEEEEEeCCCCCcCHHHHHHHHHHHHhcccccCCCeEE
Confidence 14578899999999999763 599999999999999986678889999999999987 48999
Q ss_pred EEcCCCCCCCCCCCccccHHHHHHHHHHHCCCEEEEecCCCCCCC-CCCCCCCCceEEEeeeccCCceeeeEEeCCCceE
Q 005034 338 SLSITPNRRPPGIATFFNPIDMALLSAAKAGIFVVQAAGNTGPSP-KSMSSFSPWIFTVGAASHDRIYTNSIILGNSLTI 416 (718)
Q Consensus 338 N~S~G~~~~~~~~~~~~~~~~~a~~~a~~~GilvV~AAGN~g~~~-~~~~~~~~~vitVgA~~~~~~~~~~~~~~~~~~~ 416 (718)
|||||... ...+.++++.+.++|++||+||||+|... ..+|+..+++|+||+++.+
T Consensus 124 n~S~g~~~--------~~~~~~~~~~~~~~g~liV~aaGN~g~~~~~~~pa~~~~vi~Vga~~~~--------------- 180 (255)
T cd04077 124 NMSLGGGA--------STALDAAVAAAVNAGVVVVVAAGNSNQDACNYSPASAPEAITVGATDSD--------------- 180 (255)
T ss_pred EeCCCCCC--------CHHHHHHHHHHHHCCCEEEEeCCCCCCCCCCcCccCCCceEEEeccCCC---------------
Confidence 99999753 35788888999999999999999999866 4667889999999986432
Q ss_pred eeeccCCCCCceEEEEEcccccCCCCcccCCccccccCCCCCCccCCcCceEEEEEeecccccCcchHHHHHHHHHhCCC
Q 005034 417 SGVGLAPGTDKMYTLISALHALNNNTTTTDDMYVGECQDSSNFNQDLVQGNLLICSYSIRFVLGLSTIKQAFETAKNLSA 496 (718)
Q Consensus 417 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~g~i~~~~~~~~~~~~~~~~~~~~~~~~~~ga 496 (718)
T Consensus 181 -------------------------------------------------------------------------------- 180 (255)
T cd04077 181 -------------------------------------------------------------------------------- 180 (255)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cEEEEEeCCCccCcccCCCCCCCCeEEecCcchHHHHHHHHhccCCCccccceeeeeceeEEEecccccccCCCCCceec
Q 005034 497 AGIVFYMDPFVIGFQLNPTPMKMPGIIIPSPDDSKILLQYYNSSLERDEVTKKIIKFGAVACILGGLKANFSNSAPKIMY 576 (718)
Q Consensus 497 ~~vi~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~ 576 (718)
+.++.
T Consensus 181 ---------------------------------------------------------------------------~~~~~ 185 (255)
T cd04077 181 ---------------------------------------------------------------------------DARAS 185 (255)
T ss_pred ---------------------------------------------------------------------------CCccC
Confidence 12577
Q ss_pred cccCCCCCCCCCCCCCCCCCCceeccCCceeecccCCCCCCccccCccccccCchhhhhHHHHHHHHHHHHhCCCCCHHH
Q 005034 577 YSARGPDPEDSFLDDADIMKPNLVAPGNSIWAAWSSLGTDSVEFQGESFAMMSGTSMAAPHIAGLAALIKQKFPSFSPSA 656 (718)
Q Consensus 577 fSs~Gpt~~~~~~~~~g~~KPDI~APG~~I~Sa~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~q~~p~ls~~~ 656 (718)
||++||.. ||+|||.+|.++... .++.|..++|||||||+|||++|||+|++|+++++|
T Consensus 186 ~S~~g~~~-------------~i~apG~~i~~~~~~--------~~~~~~~~~GTS~Aap~vaG~~All~~~~p~~~~~~ 244 (255)
T cd04077 186 FSNYGSCV-------------DIFAPGVDILSAWIG--------SDTATATLSGTSMAAPHVAGLAAYLLSLGPDLSPAE 244 (255)
T ss_pred cccCCCCC-------------cEEeCCCCeEecccC--------CCCcEEeeCcHHHHHHHHHHHHHHHHhhCCCCCHHH
Confidence 89999987 899999999998742 255889999999999999999999999999999999
Q ss_pred HHHHHHhcccc
Q 005034 657 IASALSTSATL 667 (718)
Q Consensus 657 ik~~L~~TA~~ 667 (718)
||++|++||++
T Consensus 245 v~~~L~~tA~~ 255 (255)
T cd04077 245 VKARLLNLATK 255 (255)
T ss_pred HHHHHHhhccC
Confidence 99999999974
No 21
>KOG1153 consensus Subtilisin-related protease/Vacuolar protease B [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.4e-43 Score=363.10 Aligned_cols=292 Identities=27% Similarity=0.393 Sum_probs=235.0
Q ss_pred EEEEecc-eeeeEEEEeCHHHHHHHhcCCCeEEEEeCceeccccC-----CCCCccCCC---------cccccccCCCCC
Q 005034 120 KLYSYHY-LINGFSVFVTPQQAEKLSRRREVANVVSDFSVRTATT-----HTPQFLGLP---------QGAWIQEGGYET 184 (718)
Q Consensus 120 ~~~~~~~-~~ng~~v~~~~~~~~~L~~~p~V~~v~~~~~~~~~~~-----~~~~~~~~~---------~~~w~~~~~~~~ 184 (718)
..+.... +++++.-..+.+.+..++++|-+..++++..++.... +....|++. ...|...-..-.
T Consensus 137 ~~f~i~~~~~~~y~~~ft~~~v~~i~~~p~~~~ve~~~~v~~~~~~~i~~Q~~APwgLaRvsh~~~~~y~~~~~Y~Y~~~ 216 (501)
T KOG1153|consen 137 NVFDIGGRVFRGYTGYFTGESVCSIRSDPLIKAVEKDSVVEVDKISTIMLQNNAPWGLARVSHREKLKYDSWGNYVYEID 216 (501)
T ss_pred cccccccchhhccccccccceeeeeccCcceeecccccccccccccceecccCCchhhhhhcccccccccchheEEeecc
Confidence 3444545 7888998999999999999999999999887765432 222223332 123333222345
Q ss_pred CCCCcEEEEEccccCCCCCCCcCCCCCCCCCCCCCCCccccccCCCCCCCCCceeeeeeecchhhhhcCccCCCCCCCCC
Q 005034 185 AGEGVVIGFIDTGIDPTHPSFADDASEHSYPVPSHFSGICEVTRDFPSGSCNRKLIGARHFAASAITRGIFNSSQDYASP 264 (718)
Q Consensus 185 ~G~gv~VaVIDtGid~~Hp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~ 264 (718)
.|+||...|+||||+..||||.++.. |.- .++ .....
T Consensus 217 aG~gvtaYv~DTGVni~H~dFegRa~---------wGa------~i~----------------------------~~~~~ 253 (501)
T KOG1153|consen 217 AGKGVTAYVLDTGVNIEHPDFEGRAI---------WGA------TIP----------------------------PKDGD 253 (501)
T ss_pred cCCCeEEEEeccccccccccccccee---------ccc------ccC----------------------------CCCcc
Confidence 89999999999999999999998754 311 110 01234
Q ss_pred CCCCCCccccccccccCCCCCccccccccCccccccCCceEEEEeecccCCCCCHHHHHHHHHHHHHC---------CCC
Q 005034 265 FDGDGHGSHTASVAAGNHGIPVVVTGHHFGNASGMAPRSHIAVYKALYKSFGGFAADVVAAIDQAAQD---------GVD 335 (718)
Q Consensus 265 ~d~~gHGThVAGiiag~~~~~~~~~g~~~~~~~GvAp~A~i~~~kv~~~~~~~~~~~i~~ai~~a~~~---------g~~ 335 (718)
.|++||||||||+|+++. .|||.+++|+++||+++++.+..++++.++|++++. +..
T Consensus 254 ~D~nGHGTH~AG~I~sKt--------------~GvAK~s~lvaVKVl~~dGsGt~Sdvi~GvE~~~k~h~~~k~~~~k~s 319 (501)
T KOG1153|consen 254 EDCNGHGTHVAGLIGSKT--------------FGVAKNSNLVAVKVLRSDGSGTVSDVIKGVEFVVKHHEKKKKKEGKKS 319 (501)
T ss_pred cccCCCcceeeeeeeccc--------------cccccccceEEEEEeccCCcEeHHHHHhHHHHHHHHhhhhhcccCCCe
Confidence 589999999999999885 599999999999999998899999999999999986 478
Q ss_pred EEEEcCCCCCCCCCCCccccHHHHHHHHHHHCCCEEEEecCCCCCCCC-CCCCCCCceEEEeeeccCCceeeeEEeCCCc
Q 005034 336 IISLSITPNRRPPGIATFFNPIDMALLSAAKAGIFVVQAAGNTGPSPK-SMSSFSPWIFTVGAASHDRIYTNSIILGNSL 414 (718)
Q Consensus 336 ViN~S~G~~~~~~~~~~~~~~~~~a~~~a~~~GilvV~AAGN~g~~~~-~~~~~~~~vitVgA~~~~~~~~~~~~~~~~~ 414 (718)
|.|||+|+.. +..++.|++.|.+.|+.|++||||+..+.+ +.|+.+.++|||||++..
T Consensus 320 v~NlSlGg~~--------S~aLn~AV~~A~~~Gi~fa~AAGNe~eDAC~~SPass~~aITVGAst~~------------- 378 (501)
T KOG1153|consen 320 VANLSLGGFR--------SAALNMAVNAASERGIHFAVAAGNEHEDACNSSPASSKKAITVGASTKN------------- 378 (501)
T ss_pred EEEEecCCcc--------cHHHHHHHHHHhhcCeEEEEcCCCcchhhhccCcccccccEEecccccc-------------
Confidence 9999999864 458999999999999999999999988764 567889999999996421
Q ss_pred eEeeeccCCCCCceEEEEEcccccCCCCcccCCccccccCCCCCCccCCcCceEEEEEeecccccCcchHHHHHHHHHhC
Q 005034 415 TISGVGLAPGTDKMYTLISALHALNNNTTTTDDMYVGECQDSSNFNQDLVQGNLLICSYSIRFVLGLSTIKQAFETAKNL 494 (718)
Q Consensus 415 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~g~i~~~~~~~~~~~~~~~~~~~~~~~~~~ 494 (718)
T Consensus 379 -------------------------------------------------------------------------------- 378 (501)
T KOG1153|consen 379 -------------------------------------------------------------------------------- 378 (501)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCcEEEEEeCCCccCcccCCCCCCCCeEEecCcchHHHHHHHHhccCCCccccceeeeeceeEEEecccccccCCCCCce
Q 005034 495 SAAGIVFYMDPFVIGFQLNPTPMKMPGIIIPSPDDSKILLQYYNSSLERDEVTKKIIKFGAVACILGGLKANFSNSAPKI 574 (718)
Q Consensus 495 ga~~vi~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 574 (718)
+++
T Consensus 379 -----------------------------------------------------------------------------D~i 381 (501)
T KOG1153|consen 379 -----------------------------------------------------------------------------DTI 381 (501)
T ss_pred -----------------------------------------------------------------------------cch
Confidence 357
Q ss_pred eccccCCCCCCCCCCCCCCCCCCceeccCCceeecccCCCCCCccccCccccccCchhhhhHHHHHHHHHHHHhCCC---
Q 005034 575 MYYSARGPDPEDSFLDDADIMKPNLVAPGNSIWAAWSSLGTDSVEFQGESFAMMSGTSMAAPHIAGLAALIKQKFPS--- 651 (718)
Q Consensus 575 a~fSs~Gpt~~~~~~~~~g~~KPDI~APG~~I~Sa~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~q~~p~--- 651 (718)
+.||+||+++ ||.|||.+|.|+|... .+.-.++||||||+|||||++|..+..+|.
T Consensus 382 A~FSN~G~CV-------------diFAPGv~IlSs~iGs--------~~at~ilSGTSMasPhvaG~aAy~ls~~~~~~~ 440 (501)
T KOG1153|consen 382 AFFSNWGKCV-------------DIFAPGVNILSSWIGS--------NNATAILSGTSMASPHVAGLAAYFLSLGPLPDS 440 (501)
T ss_pred hhhcCcccee-------------eeecCchhhhhhhhcC--------ccchheeecccccCcchhhhHHHhhhcCCCChH
Confidence 9999999999 8999999999999643 235678999999999999999999998883
Q ss_pred ------CCHHHHHHHHHhcccc
Q 005034 652 ------FSPSAIASALSTSATL 667 (718)
Q Consensus 652 ------ls~~~ik~~L~~TA~~ 667 (718)
.|+.++|..++.-..+
T Consensus 441 ~f~n~~~s~~~lk~~~l~~~~~ 462 (501)
T KOG1153|consen 441 SFANDAGSPSELKKRLLKFKTQ 462 (501)
T ss_pred HhhhccCChHHhhhhhhccccc
Confidence 4899999988877654
No 22
>cd07484 Peptidases_S8_Thermitase_like Peptidase S8 family domain in Thermitase-like proteins. Thermitase is a non-specific, trypsin-related serine protease with a very high specific activity. It contains a subtilisin like domain. The tertiary structure of thermitase is similar to that of subtilisin BPN'. It contains a Asp/His/Ser catalytic triad. Members of the peptidases S8 (subtilisin and kexin) and S53 (sedolisin) clan include endopeptidases and exopeptidases. The S8 family has an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. Serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base. The S53 family contains a catalytic triad Glu/Asp/Ser with an additional acidic residue Asp in the oxyanion hole, similar to that of subtilisin. The serine residue here is the nucleophilic equivalent of the serine residue in the S8 family, while glutamic acid
Probab=100.00 E-value=1.6e-42 Score=359.65 Aligned_cols=245 Identities=34% Similarity=0.491 Sum_probs=203.7
Q ss_pred ccCCCcccccccCCCCCCCCCcEEEEEccccCCCCCCCcCCCCCCCCCCCCCCCccccccCCCCCCCCCceeeeeeecch
Q 005034 168 FLGLPQGAWIQEGGYETAGEGVVIGFIDTGIDPTHPSFADDASEHSYPVPSHFSGICEVTRDFPSGSCNRKLIGARHFAA 247 (718)
Q Consensus 168 ~~~~~~~~w~~~~~~~~~G~gv~VaVIDtGid~~Hp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~ 247 (718)
.++.+. +|.. + +|+||+|+|||+||+++||+|..... ...+++.+
T Consensus 15 ~~~~~~-~~~~----~-~G~gv~I~viDsGi~~~h~~l~~~~~-----------------------------~~~~~~~~ 59 (260)
T cd07484 15 QIGAPK-AWDI----T-GGSGVTVAVVDTGVDPTHPDLLKVKF-----------------------------VLGYDFVD 59 (260)
T ss_pred ccChHH-HHhh----c-CCCCCEEEEEeCCCCCCCcccccCCc-----------------------------ccceeccC
Confidence 344444 7876 3 99999999999999999999854322 11112211
Q ss_pred hhhhcCccCCCCCCCCCCCCCCCccccccccccCCCCCccccccccCccccccCCceEEEEeecccCCCCCHHHHHHHHH
Q 005034 248 SAITRGIFNSSQDYASPFDGDGHGSHTASVAAGNHGIPVVVTGHHFGNASGMAPRSHIAVYKALYKSFGGFAADVVAAID 327 (718)
Q Consensus 248 ~~~~~~~~~~~~~~~~~~d~~gHGThVAGiiag~~~~~~~~~g~~~~~~~GvAp~A~i~~~kv~~~~~~~~~~~i~~ai~ 327 (718)
....+.|..+|||||||||++...++ .++.|+||+|+|+.+++++....+...++.++|+
T Consensus 60 ------------~~~~~~d~~~HGT~vagii~~~~~~~--------~~~~Giap~a~l~~~~v~~~~~~~~~~~~~~ai~ 119 (260)
T cd07484 60 ------------NDSDAMDDNGHGTHVAGIIAAATNNG--------TGVAGVAPKAKIMPVKVLDANGSGSLADIANGIR 119 (260)
T ss_pred ------------CCCCCCCCCCcHHHHHHHHhCccCCC--------CceEeECCCCEEEEEEEECCCCCcCHHHHHHHHH
Confidence 11235578899999999999875432 3468999999999999998766688899999999
Q ss_pred HHHHCCCCEEEEcCCCCCCCCCCCccccHHHHHHHHHHHCCCEEEEecCCCCCCCCCCCCCCCceEEEeeeccCCceeee
Q 005034 328 QAAQDGVDIISLSITPNRRPPGIATFFNPIDMALLSAAKAGIFVVQAAGNTGPSPKSMSSFSPWIFTVGAASHDRIYTNS 407 (718)
Q Consensus 328 ~a~~~g~~ViN~S~G~~~~~~~~~~~~~~~~~a~~~a~~~GilvV~AAGN~g~~~~~~~~~~~~vitVgA~~~~~~~~~~ 407 (718)
++++.+++|||||||... ....+.++++.+.++|++||+||||+|.....+|+..+++|+||+++.+
T Consensus 120 ~a~~~~~~iin~S~g~~~-------~~~~~~~~~~~a~~~gilvV~aaGN~g~~~~~~pa~~~~vi~Vga~~~~------ 186 (260)
T cd07484 120 YAADKGAKVINLSLGGGL-------GSTALQEAINYAWNKGVVVVAAAGNEGVSSVSYPAAYPGAIAVAATDQD------ 186 (260)
T ss_pred HHHHCCCeEEEecCCCCC-------CCHHHHHHHHHHHHCCCEEEEeCCCCCCCCCCCCCCCCCeEEEEeeCCC------
Confidence 999999999999999754 3467888999999999999999999999888999999999999986432
Q ss_pred EEeCCCceEeeeccCCCCCceEEEEEcccccCCCCcccCCccccccCCCCCCccCCcCceEEEEEeecccccCcchHHHH
Q 005034 408 IILGNSLTISGVGLAPGTDKMYTLISALHALNNNTTTTDDMYVGECQDSSNFNQDLVQGNLLICSYSIRFVLGLSTIKQA 487 (718)
Q Consensus 408 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~g~i~~~~~~~~~~~~~~~~~~~ 487 (718)
T Consensus 187 -------------------------------------------------------------------------------- 186 (260)
T cd07484 187 -------------------------------------------------------------------------------- 186 (260)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHhCCCcEEEEEeCCCccCcccCCCCCCCCeEEecCcchHHHHHHHHhccCCCccccceeeeeceeEEEeccccccc
Q 005034 488 FETAKNLSAAGIVFYMDPFVIGFQLNPTPMKMPGIIIPSPDDSKILLQYYNSSLERDEVTKKIIKFGAVACILGGLKANF 567 (718)
Q Consensus 488 ~~~~~~~ga~~vi~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 567 (718)
T Consensus 187 -------------------------------------------------------------------------------- 186 (260)
T cd07484 187 -------------------------------------------------------------------------------- 186 (260)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCCCceeccccCCCCCCCCCCCCCCCCCCceeccCCceeecccCCCCCCccccCccccccCchhhhhHHHHHHHHHHHH
Q 005034 568 SNSAPKIMYYSARGPDPEDSFLDDADIMKPNLVAPGNSIWAAWSSLGTDSVEFQGESFAMMSGTSMAAPHIAGLAALIKQ 647 (718)
Q Consensus 568 ~~~~~~~a~fSs~Gpt~~~~~~~~~g~~KPDI~APG~~I~Sa~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~q 647 (718)
+.++.||++|+.. |++|||.+|++.. ..+.|..++|||||||+|||++|||++
T Consensus 187 ----~~~~~~s~~g~~~-------------~~~apG~~i~~~~----------~~~~~~~~~GTS~Aap~vag~~Al~~~ 239 (260)
T cd07484 187 ----DKRASFSNYGKWV-------------DVSAPGGGILSTT----------PDGDYAYMSGTSMATPHVAGVAALLYS 239 (260)
T ss_pred ----CCcCCcCCCCCCc-------------eEEeCCCCcEeec----------CCCCEEEeeeHHHHHHHHHHHHHHHHh
Confidence 1246789999876 8999999999987 456899999999999999999999999
Q ss_pred hCCCCCHHHHHHHHHhccccc
Q 005034 648 KFPSFSPSAIASALSTSATLY 668 (718)
Q Consensus 648 ~~p~ls~~~ik~~L~~TA~~~ 668 (718)
++| +++++||++|++||+++
T Consensus 240 ~~p-~t~~~i~~~L~~tA~~~ 259 (260)
T cd07484 240 QGP-LSASEVRDALKKTADDI 259 (260)
T ss_pred cCC-CCHHHHHHHHHHhCccC
Confidence 999 99999999999999875
No 23
>cd07490 Peptidases_S8_6 Peptidase S8 family domain, uncharacterized subfamily 6. This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values.
Probab=100.00 E-value=1.8e-42 Score=358.11 Aligned_cols=253 Identities=28% Similarity=0.467 Sum_probs=191.3
Q ss_pred CcEEEEEccccCCCCCCCcCCCCCCCCCCCCCCCccccccCCCCCCCCCceeeeeeecchhhhhcCccCCCCCCCCCCCC
Q 005034 188 GVVIGFIDTGIDPTHPSFADDASEHSYPVPSHFSGICEVTRDFPSGSCNRKLIGARHFAASAITRGIFNSSQDYASPFDG 267 (718)
Q Consensus 188 gv~VaVIDtGid~~Hp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~d~ 267 (718)
||+|||||+|||++||+|.+... .| .+|... .........|.
T Consensus 1 GV~VaviDsGv~~~hp~l~~~~~--------~~----------------------~~~~~~--------~~~~~~~~~d~ 42 (254)
T cd07490 1 GVTVAVLDTGVDADHPDLAGRVA--------QW----------------------ADFDEN--------RRISATEVFDA 42 (254)
T ss_pred CCEEEEEeCCCCCCCcchhcccC--------Cc----------------------eeccCC--------CCCCCCCCCCC
Confidence 79999999999999999987543 11 011100 00112344577
Q ss_pred CCCccccccccccCCCCCccccccccCccccccCCceEEEEeecccCCCCCHHHHHHHHHHHHHCCCCEEEEcCCCCCCC
Q 005034 268 DGHGSHTASVAAGNHGIPVVVTGHHFGNASGMAPRSHIAVYKALYKSFGGFAADVVAAIDQAAQDGVDIISLSITPNRRP 347 (718)
Q Consensus 268 ~gHGThVAGiiag~~~~~~~~~g~~~~~~~GvAp~A~i~~~kv~~~~~~~~~~~i~~ai~~a~~~g~~ViN~S~G~~~~~ 347 (718)
.+|||||||||+|+.++ ....||||+++|+.+|++.... ....+++++|+|+++.+++|||||||.....
T Consensus 43 ~~HGT~vAgiia~~~~~---------~~~~GvAp~a~i~~~~v~~~~~-~~~~~~~~ai~~a~~~~~~Vin~S~g~~~~~ 112 (254)
T cd07490 43 GGHGTHVSGTIGGGGAK---------GVYIGVAPEADLLHGKVLDDGG-GSLSQIIAGMEWAVEKDADVVSMSLGGTYYS 112 (254)
T ss_pred CCcHHHHHHHHhcCCCC---------CCEEEECCCCEEEEEEEecCCC-CcHHHHHHHHHHHHhCCCCEEEECCCcCCCC
Confidence 89999999999998642 2457999999999999998743 7889999999999999999999999976432
Q ss_pred CCCCccccHHHHHHHHHHH-CCCEEEEecCCCCCCCCCCCCCCCceEEEeeeccCCceeeeEEeCCCceEeeeccCCCCC
Q 005034 348 PGIATFFNPIDMALLSAAK-AGIFVVQAAGNTGPSPKSMSSFSPWIFTVGAASHDRIYTNSIILGNSLTISGVGLAPGTD 426 (718)
Q Consensus 348 ~~~~~~~~~~~~a~~~a~~-~GilvV~AAGN~g~~~~~~~~~~~~vitVgA~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 426 (718)
...+.++++.+.+ +|++||+||||++.....+|+..+++|+|||++.+.....+...+
T Consensus 113 ------~~~~~~~~~~~~~~~g~lvV~aAGN~g~~~~~~pa~~~~vi~Vga~~~~~~~~~~s~~g--------------- 171 (254)
T cd07490 113 ------EDPLEEAVEALSNQTGALFVVSAGNEGHGTSGSPGSAYAALSVGAVDRDDEDAWFSSFG--------------- 171 (254)
T ss_pred ------CcHHHHHHHHHHHcCCCEEEEeCCCCCCCCCCCCccCCceeEEecccccCCccCccCCc---------------
Confidence 3456666666665 699999999999998888899999999999987543311100000
Q ss_pred ceEEEEEcccccCCCCcccCCccccccCCCCCCccCCcCceEEEEEeecccccCcchHHHHHHHHHhCCCcEEEEEeCCC
Q 005034 427 KMYTLISALHALNNNTTTTDDMYVGECQDSSNFNQDLVQGNLLICSYSIRFVLGLSTIKQAFETAKNLSAAGIVFYMDPF 506 (718)
Q Consensus 427 ~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~g~i~~~~~~~~~~~~~~~~~~~~~~~~~~ga~~vi~~~~~~ 506 (718)
T Consensus 172 -------------------------------------------------------------------------------- 171 (254)
T cd07490 172 -------------------------------------------------------------------------------- 171 (254)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred ccCcccCCCCCCCCeEEecCcchHHHHHHHHhccCCCccccceeeeeceeEEEecccccccCCCCCceeccccCCCCCCC
Q 005034 507 VIGFQLNPTPMKMPGIIIPSPDDSKILLQYYNSSLERDEVTKKIIKFGAVACILGGLKANFSNSAPKIMYYSARGPDPED 586 (718)
Q Consensus 507 ~~~~~~~~~~~~~p~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~fSs~Gpt~~~ 586 (718)
.......+.+|....
T Consensus 172 -----------------------------------------------------------------~~~~~~~~~~~~~~~ 186 (254)
T cd07490 172 -----------------------------------------------------------------SSGASLVSAPDSPPD 186 (254)
T ss_pred -----------------------------------------------------------------ccccccccCCCCCcc
Confidence 001112333443321
Q ss_pred CCCCCCCCCCCceeccCCceeecccCCCCCCccccCccccccCchhhhhHHHHHHHHHHHHhCCCCCHHHHHHHHHhccc
Q 005034 587 SFLDDADIMKPNLVAPGNSIWAAWSSLGTDSVEFQGESFAMMSGTSMAAPHIAGLAALIKQKFPSFSPSAIASALSTSAT 666 (718)
Q Consensus 587 ~~~~~~g~~KPDI~APG~~I~Sa~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~q~~p~ls~~~ik~~L~~TA~ 666 (718)
...||||+|||.+|+++..... ..+.|..++|||||||+|||++|||+|++|++++.|||.+|++||+
T Consensus 187 ------~~~~~d~~apG~~i~~~~~~~~------~~~~~~~~~GTS~AaP~vaG~aAl~~~~~p~~~~~~i~~~L~~tA~ 254 (254)
T cd07490 187 ------EYTKPDVAAPGVDVYSARQGAN------GDGQYTRLSGTSMAAPHVAGVAALLAAAHPDLSPEQIKDALTETAY 254 (254)
T ss_pred ------CCcCceEEeccCCeEccccCCC------CCCCeeecccHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHhcC
Confidence 4789999999999999652211 4568999999999999999999999999999999999999999984
No 24
>cd07496 Peptidases_S8_13 Peptidase S8 family domain, uncharacterized subfamily 13. This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values.
Probab=100.00 E-value=2.2e-42 Score=363.09 Aligned_cols=204 Identities=30% Similarity=0.404 Sum_probs=168.7
Q ss_pred CCCCCCCCccccccccccCCCCCccccccccCccccccCCceEEEEeecccCCCCCHHHHHHHHHHHH----------HC
Q 005034 263 SPFDGDGHGSHTASVAAGNHGIPVVVTGHHFGNASGMAPRSHIAVYKALYKSFGGFAADVVAAIDQAA----------QD 332 (718)
Q Consensus 263 ~~~d~~gHGThVAGiiag~~~~~~~~~g~~~~~~~GvAp~A~i~~~kv~~~~~~~~~~~i~~ai~~a~----------~~ 332 (718)
...+..+|||||||||+|..+++ .++.||||+|+|+.+|+++.. +++.+++++|++|++ .+
T Consensus 66 ~~~~~~~HGT~vAgiiaa~~~~~--------~~~~GvAp~a~i~~~~v~~~~-~~~~~~i~~a~~~a~~~~~~~~~~~~~ 136 (285)
T cd07496 66 GVSPSSWHGTHVAGTIAAVTNNG--------VGVAGVAWGARILPVRVLGKC-GGTLSDIVDGMRWAAGLPVPGVPVNPN 136 (285)
T ss_pred CCCCCCCCHHHHHHHHhCcCCCC--------CCceeecCCCeEEEEEEecCC-CCcHHHHHHHHHHHhccCcCCCcccCC
Confidence 34567899999999999986532 356899999999999999874 448899999999998 45
Q ss_pred CCCEEEEcCCCCCCCCCCCccccHHHHHHHHHHHCCCEEEEecCCCCCCC-CCCCCCCCceEEEeeeccCCceeeeEEeC
Q 005034 333 GVDIISLSITPNRRPPGIATFFNPIDMALLSAAKAGIFVVQAAGNTGPSP-KSMSSFSPWIFTVGAASHDRIYTNSIILG 411 (718)
Q Consensus 333 g~~ViN~S~G~~~~~~~~~~~~~~~~~a~~~a~~~GilvV~AAGN~g~~~-~~~~~~~~~vitVgA~~~~~~~~~~~~~~ 411 (718)
+++|||||||..... ...+.++++.+.++|++||+||||++... ..+|+..+++|+|||++.+
T Consensus 137 ~~~Iin~S~G~~~~~------~~~~~~ai~~a~~~GvivV~AAGN~g~~~~~~~Pa~~~~vi~Vga~~~~---------- 200 (285)
T cd07496 137 PAKVINLSLGGDGAC------SATMQNAINDVRARGVLVVVAAGNEGSSASVDAPANCRGVIAVGATDLR---------- 200 (285)
T ss_pred CCeEEEeCCCCCCCC------CHHHHHHHHHHHHCCCEEEEECCCCCCCCCccCCCCCCceEEEeccCCC----------
Confidence 789999999986431 36788899999999999999999999876 6678889999999986432
Q ss_pred CCceEeeeccCCCCCceEEEEEcccccCCCCcccCCccccccCCCCCCccCCcCceEEEEEeecccccCcchHHHHHHHH
Q 005034 412 NSLTISGVGLAPGTDKMYTLISALHALNNNTTTTDDMYVGECQDSSNFNQDLVQGNLLICSYSIRFVLGLSTIKQAFETA 491 (718)
Q Consensus 412 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~g~i~~~~~~~~~~~~~~~~~~~~~~~ 491 (718)
T Consensus 201 -------------------------------------------------------------------------------- 200 (285)
T cd07496 201 -------------------------------------------------------------------------------- 200 (285)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HhCCCcEEEEEeCCCccCcccCCCCCCCCeEEecCcchHHHHHHHHhccCCCccccceeeeeceeEEEecccccccCCCC
Q 005034 492 KNLSAAGIVFYMDPFVIGFQLNPTPMKMPGIIIPSPDDSKILLQYYNSSLERDEVTKKIIKFGAVACILGGLKANFSNSA 571 (718)
Q Consensus 492 ~~~ga~~vi~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 571 (718)
T Consensus 201 -------------------------------------------------------------------------------- 200 (285)
T cd07496 201 -------------------------------------------------------------------------------- 200 (285)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CceeccccCCCCCCCCCCCCCCCCCCceeccCCceeecccCCCCC-----CccccCccccccCchhhhhHHHHHHHHHHH
Q 005034 572 PKIMYYSARGPDPEDSFLDDADIMKPNLVAPGNSIWAAWSSLGTD-----SVEFQGESFAMMSGTSMAAPHIAGLAALIK 646 (718)
Q Consensus 572 ~~~a~fSs~Gpt~~~~~~~~~g~~KPDI~APG~~I~Sa~~~~~~~-----~~~~~~~~y~~~sGTSmAaP~VAG~aALl~ 646 (718)
+.++.||++|+.. ||+|||.+|.++....... ........|..++|||||||+|||++|||+
T Consensus 201 ~~~~~~S~~g~~v-------------di~apG~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~sGTS~AaP~vaG~aAlv~ 267 (285)
T cd07496 201 GQRASYSNYGPAV-------------DVSAPGGDCASDVNGDGYPDSNTGTTSPGGSTYGFLQGTSMAAPHVAGVAALMK 267 (285)
T ss_pred CCcccccCCCCCC-------------CEEeCCCCccccCCCCccccccccccCCCCCceEeeCcHHHHHHHHHHHHHHHH
Confidence 2357899999987 8999999999887543210 112234578899999999999999999999
Q ss_pred HhCCCCCHHHHHHHHHhc
Q 005034 647 QKFPSFSPSAIASALSTS 664 (718)
Q Consensus 647 q~~p~ls~~~ik~~L~~T 664 (718)
|++|+|++++||++|++|
T Consensus 268 ~~~p~lt~~~v~~~L~~t 285 (285)
T cd07496 268 SVNPSLTPAQIESLLQST 285 (285)
T ss_pred HhCCCCCHHHHHHHHHhC
Confidence 999999999999999876
No 25
>cd07480 Peptidases_S8_12 Peptidase S8 family domain, uncharacterized subfamily 12. This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values.
Probab=100.00 E-value=1.7e-42 Score=365.72 Aligned_cols=148 Identities=32% Similarity=0.470 Sum_probs=112.5
Q ss_pred CCCCCCcEEEEEccccCCCCCCCcCCCCCCCCCCCCCCCccccccCCCCCCCCCceeeeeeecchhhhhcCccCCCCCCC
Q 005034 183 ETAGEGVVIGFIDTGIDPTHPSFADDASEHSYPVPSHFSGICEVTRDFPSGSCNRKLIGARHFAASAITRGIFNSSQDYA 262 (718)
Q Consensus 183 ~~~G~gv~VaVIDtGid~~Hp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~ 262 (718)
+++|+||+|||||+|||.+||+|.+... ...+|.+ ..
T Consensus 4 ~~tG~gv~VaVlDsGv~~~hp~l~~~~~------------------------------~~~~~~~-------------~~ 40 (297)
T cd07480 4 PFTGAGVRVAVLDTGIDLTHPAFAGRDI------------------------------TTKSFVG-------------GE 40 (297)
T ss_pred CCCCCCCEEEEEcCCCCCCChhhcCCcc------------------------------cCcccCC-------------CC
Confidence 6999999999999999999999997543 0011111 12
Q ss_pred CCCCCCCCccccccccccCCCCCccccccccCccccccCCceEEEEeecccCCCCCHHHHHHHHHHHHHCCCCEEEEcCC
Q 005034 263 SPFDGDGHGSHTASVAAGNHGIPVVVTGHHFGNASGMAPRSHIAVYKALYKSFGGFAADVVAAIDQAAQDGVDIISLSIT 342 (718)
Q Consensus 263 ~~~d~~gHGThVAGiiag~~~~~~~~~g~~~~~~~GvAp~A~i~~~kv~~~~~~~~~~~i~~ai~~a~~~g~~ViN~S~G 342 (718)
...|..+|||||||||+|+... +...||||+|+|+.+|++..........++++|+|+++.|++|||||||
T Consensus 41 ~~~d~~gHGT~VAgiiag~~~~---------~~~~GvAp~a~i~~~~~~~~~~~~~~~~i~~ai~~a~~~g~~Vin~S~G 111 (297)
T cd07480 41 DVQDGHGHGTHCAGTIFGRDVP---------GPRYGVARGAEIALIGKVLGDGGGGDGGILAGIQWAVANGADVISMSLG 111 (297)
T ss_pred CCCCCCCcHHHHHHHHhcccCC---------CcccccCCCCEEEEEEEEeCCCCCcHHHHHHHHHHHHHcCCCEEEeccC
Confidence 2457889999999999987543 2346999999999999998767788888999999999999999999999
Q ss_pred CCCCC------CCCCccccHHHHHHHHH---------------HHCCCEEEEecCCCCCCC
Q 005034 343 PNRRP------PGIATFFNPIDMALLSA---------------AKAGIFVVQAAGNTGPSP 382 (718)
Q Consensus 343 ~~~~~------~~~~~~~~~~~~a~~~a---------------~~~GilvV~AAGN~g~~~ 382 (718)
..... .....+...++.+.+.+ .++|++||+||||++...
T Consensus 112 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~gvlvV~aAGN~g~~~ 172 (297)
T cd07480 112 ADFPGLVDQGWPPGLAFSRALEAYRQRARLFDALMTLVAAQAALARGTLIVAAAGNESQRP 172 (297)
T ss_pred CCCcccccccCCCCchhHHHHHHHHHHHhhhhhhhhhhhhhhhhcCCceEEEecCCCCCCC
Confidence 85411 11122233444444444 789999999999998754
No 26
>cd04842 Peptidases_S8_Kp43_protease Peptidase S8 family domain in Kp43 proteases. Kp43 proteases are members of the peptidase S8 or Subtilase clan of proteases. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure (an example of convergent evolution). Kp43 is topologically similar to kexin and furin both of which are proprotein convertases, but differ in amino acids sequence and the position of its C-terminal barrel. Kp43 has 3 Ca2+ binding sites that differ from the corresponding sites in the other known subtilisin-like proteases. KP-43 protease is known to be an oxidation-resistant protease when compared with the other subtilisin-like proteases
Probab=100.00 E-value=2.1e-42 Score=365.25 Aligned_cols=278 Identities=27% Similarity=0.359 Sum_probs=202.3
Q ss_pred CCCCCCCcEEEEEccccCCCCCCCcCCCCCCCCCCCCCCCccccccCCCCCCCCCceeeeeeecchhhhhcCccCCCCCC
Q 005034 182 YETAGEGVVIGFIDTGIDPTHPSFADDASEHSYPVPSHFSGICEVTRDFPSGSCNRKLIGARHFAASAITRGIFNSSQDY 261 (718)
Q Consensus 182 ~~~~G~gv~VaVIDtGid~~Hp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~ 261 (718)
.+++|+||+|||||+||+++||+|.+... . ...+..+++.....+..
T Consensus 2 ~g~tG~gv~VaviDtGi~~~hp~l~~~~~--------~-----------~~~~~~~~~~~~~~~~~-------------- 48 (293)
T cd04842 2 LGLTGKGQIVGVADTGLDTNHCFFYDPNF--------N-----------KTNLFHRKIVRYDSLSD-------------- 48 (293)
T ss_pred CCcCCcCCEEEEEecCCCCCCCcccCCCc--------C-----------cCccCcccEEEeeccCC--------------
Confidence 47999999999999999999999987532 0 00112233333332221
Q ss_pred CCCCCCCCCccccccccccCCCCCccccccccCccccccCCceEEEEeecccCCC-CCHHHHHHHHHHHHHCCCCEEEEc
Q 005034 262 ASPFDGDGHGSHTASVAAGNHGIPVVVTGHHFGNASGMAPRSHIAVYKALYKSFG-GFAADVVAAIDQAAQDGVDIISLS 340 (718)
Q Consensus 262 ~~~~d~~gHGThVAGiiag~~~~~~~~~g~~~~~~~GvAp~A~i~~~kv~~~~~~-~~~~~i~~ai~~a~~~g~~ViN~S 340 (718)
...|..+|||||||||+|..++... ..++.||||+|+|+.+|++..... ....++..+++++.+.+++|||||
T Consensus 49 -~~~d~~~HGT~vAgiia~~~~~~~~-----~~~~~GvAp~a~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Vin~S 122 (293)
T cd04842 49 -TKDDVDGHGTHVAGIIAGKGNDSSS-----ISLYKGVAPKAKLYFQDIGDTSGNLSSPPDLNKLFSPMYDAGARISSNS 122 (293)
T ss_pred -CCCCCCCCcchhheeeccCCcCCCc-----ccccccccccCeEEEEEeeccCccccCCccHHHHHHHHHHhCCEEEecc
Confidence 1227889999999999998654321 115689999999999999887442 456678899999999999999999
Q ss_pred CCCCCCCCCCCccccHHHHHHHHHH-H-CCCEEEEecCCCCCCCC---CCCCCCCceEEEeeeccCCceeeeEEeCCCce
Q 005034 341 ITPNRRPPGIATFFNPIDMALLSAA-K-AGIFVVQAAGNTGPSPK---SMSSFSPWIFTVGAASHDRIYTNSIILGNSLT 415 (718)
Q Consensus 341 ~G~~~~~~~~~~~~~~~~~a~~~a~-~-~GilvV~AAGN~g~~~~---~~~~~~~~vitVgA~~~~~~~~~~~~~~~~~~ 415 (718)
||..... ....+.+++..+. + +|++||+||||++.... ..|+..+++|+|||++.......
T Consensus 123 ~G~~~~~-----~~~~~~~~~~~~~~~~~g~lvV~aAGN~g~~~~~~~~~pa~~~~vi~Vga~~~~~~~~~--------- 188 (293)
T cd04842 123 WGSPVNN-----GYTLLARAYDQFAYNNPDILFVFSAGNDGNDGSNTIGSPATAKNVLTVGASNNPSVSNG--------- 188 (293)
T ss_pred CCCCCcc-----ccchHHHHHHHHHHhCCCeEEEEeCCCCCCCCCccccCcccccceEEEeeccCCCcccc---------
Confidence 9986532 1233444444333 3 79999999999998765 67788999999999875432100
Q ss_pred EeeeccCCCCCceEEEEEcccccCCCCcccCCccccccCCCCCCccCCcCceEEEEEeecccccCcchHHHHHHHHHhCC
Q 005034 416 ISGVGLAPGTDKMYTLISALHALNNNTTTTDDMYVGECQDSSNFNQDLVQGNLLICSYSIRFVLGLSTIKQAFETAKNLS 495 (718)
Q Consensus 416 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~g~i~~~~~~~~~~~~~~~~~~~~~~~~~~g 495 (718)
..|..
T Consensus 189 -----------------------------------~~~~~---------------------------------------- 193 (293)
T cd04842 189 -----------------------------------EGGLG---------------------------------------- 193 (293)
T ss_pred -----------------------------------ccccc----------------------------------------
Confidence 00000
Q ss_pred CcEEEEEeCCCccCcccCCCCCCCCeEEecCcchHHHHHHHHhccCCCccccceeeeeceeEEEecccccccCCCCCcee
Q 005034 496 AAGIVFYMDPFVIGFQLNPTPMKMPGIIIPSPDDSKILLQYYNSSLERDEVTKKIIKFGAVACILGGLKANFSNSAPKIM 575 (718)
Q Consensus 496 a~~vi~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a 575 (718)
.....+.++
T Consensus 194 -----------------------------------------------------------------------~~~~~~~~~ 202 (293)
T cd04842 194 -----------------------------------------------------------------------QSDNSDTVA 202 (293)
T ss_pred -----------------------------------------------------------------------ccCCCCccc
Confidence 011224578
Q ss_pred ccccCCCCCCCCCCCCCCCCCCceeccCCceeecccCCCCCCccccCccccccCchhhhhHHHHHHHHHHHHhCC-----
Q 005034 576 YYSARGPDPEDSFLDDADIMKPNLVAPGNSIWAAWSSLGTDSVEFQGESFAMMSGTSMAAPHIAGLAALIKQKFP----- 650 (718)
Q Consensus 576 ~fSs~Gpt~~~~~~~~~g~~KPDI~APG~~I~Sa~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~q~~p----- 650 (718)
.||++||+.+ ++.||||+|||.+|+++..... .........|..++|||||||+|||++|||+|++|
T Consensus 203 ~~S~~G~~~~-------~~~~pdv~ApG~~i~~~~~~~~-~~~~~~~~~~~~~~GTS~AaP~VaG~aAll~~~~~~~~~~ 274 (293)
T cd04842 203 SFSSRGPTYD-------GRIKPDLVAPGTGILSARSGGG-GIGDTSDSAYTSKSGTSMATPLVAGAAALLRQYFVDGYYP 274 (293)
T ss_pred cccCcCCCCC-------CCcCCCEECCCCCeEeccCCCC-CCCCCChhheeecCcHHHHHHHHHHHHHHHHHHHHhcCcC
Confidence 9999999986 7999999999999999975420 01111455889999999999999999999999865
Q ss_pred ---CCCHHHHHHHHHhccc
Q 005034 651 ---SFSPSAIASALSTSAT 666 (718)
Q Consensus 651 ---~ls~~~ik~~L~~TA~ 666 (718)
.+++.++|++|++||+
T Consensus 275 ~~~~~~~~~~ka~l~~sA~ 293 (293)
T cd04842 275 TKFNPSAALLKALLINSAR 293 (293)
T ss_pred CCcCcCHHHHHHHHHhcCC
Confidence 5566799999999985
No 27
>cd07498 Peptidases_S8_15 Peptidase S8 family domain, uncharacterized subfamily 15. This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values.
Probab=100.00 E-value=2.7e-42 Score=353.99 Aligned_cols=241 Identities=31% Similarity=0.445 Sum_probs=193.9
Q ss_pred cEEEEEccccCCCCCCCcCCCCCCCCCCCCCCCccccccCCCCCCCCCceeeeeeecchhhhhcCccCCCCCCCCCCCCC
Q 005034 189 VVIGFIDTGIDPTHPSFADDASEHSYPVPSHFSGICEVTRDFPSGSCNRKLIGARHFAASAITRGIFNSSQDYASPFDGD 268 (718)
Q Consensus 189 v~VaVIDtGid~~Hp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~d~~ 268 (718)
|+|||||+||+++||+|.+... ....|+ +. .+.....|..
T Consensus 1 V~VaviDsGi~~~hp~l~~~~~-----~~~~~~-----------------------~~------------~~~~~~~~~~ 40 (242)
T cd07498 1 VVVAIIDTGVDLNHPDLSGKPK-----LVPGWN-----------------------FV------------SNNDPTSDID 40 (242)
T ss_pred CEEEEecCCCCCCChhhccCcC-----ccCCcc-----------------------cc------------CCCCCCCCCC
Confidence 6899999999999999997421 111111 10 0112345788
Q ss_pred CCccccccccccCCCCCccccccccCccccccCCceEEEEeecccCCCCCHHHHHHHHHHHHHCCCCEEEEcCCCCCCCC
Q 005034 269 GHGSHTASVAAGNHGIPVVVTGHHFGNASGMAPRSHIAVYKALYKSFGGFAADVVAAIDQAAQDGVDIISLSITPNRRPP 348 (718)
Q Consensus 269 gHGThVAGiiag~~~~~~~~~g~~~~~~~GvAp~A~i~~~kv~~~~~~~~~~~i~~ai~~a~~~g~~ViN~S~G~~~~~~ 348 (718)
+|||||||||+|+.++. .++.||||+|+|+.+|++.........++.++++|+++.+++|||||||.....
T Consensus 41 ~HGT~vAgiiag~~~~~--------~~~~Gvap~a~i~~~~~~~~~~~~~~~~~~~ai~~a~~~~~~Vin~S~g~~~~~- 111 (242)
T cd07498 41 GHGTACAGVAAAVGNNG--------LGVAGVAPGAKLMPVRIADSLGYAYWSDIAQAITWAADNGADVISNSWGGSDST- 111 (242)
T ss_pred CCHHHHHHHHHhccCCC--------ceeEeECCCCEEEEEEEECCCCCccHHHHHHHHHHHHHCCCeEEEeccCCCCCC-
Confidence 99999999999986432 346899999999999999876567888999999999999999999999976543
Q ss_pred CCCccccHHHHHHHHHHH-CCCEEEEecCCCCCCCCCCCCCCCceEEEeeeccCCceeeeEEeCCCceEeeeccCCCCCc
Q 005034 349 GIATFFNPIDMALLSAAK-AGIFVVQAAGNTGPSPKSMSSFSPWIFTVGAASHDRIYTNSIILGNSLTISGVGLAPGTDK 427 (718)
Q Consensus 349 ~~~~~~~~~~~a~~~a~~-~GilvV~AAGN~g~~~~~~~~~~~~vitVgA~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 427 (718)
..+...++++++.++. +|++||+||||+|.....+|+..+++|+||+++..
T Consensus 112 --~~~~~~~~~~~~~~~~~~gvliv~aaGN~g~~~~~~pa~~~~vi~Vga~~~~-------------------------- 163 (242)
T cd07498 112 --ESISSAIDNAATYGRNGKGGVVLFAAGNSGRSVSSGYAANPSVIAVAATDSN-------------------------- 163 (242)
T ss_pred --chHHHHHHHHHHHHhhcCCeEEEEecCCCCCccCCCCcCCCCeEEEEEeCCC--------------------------
Confidence 2345788888888888 99999999999999877788899999999996432
Q ss_pred eEEEEEcccccCCCCcccCCccccccCCCCCCccCCcCceEEEEEeecccccCcchHHHHHHHHHhCCCcEEEEEeCCCc
Q 005034 428 MYTLISALHALNNNTTTTDDMYVGECQDSSNFNQDLVQGNLLICSYSIRFVLGLSTIKQAFETAKNLSAAGIVFYMDPFV 507 (718)
Q Consensus 428 ~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~g~i~~~~~~~~~~~~~~~~~~~~~~~~~~ga~~vi~~~~~~~ 507 (718)
T Consensus 164 -------------------------------------------------------------------------------- 163 (242)
T cd07498 164 -------------------------------------------------------------------------------- 163 (242)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cCcccCCCCCCCCeEEecCcchHHHHHHHHhccCCCccccceeeeeceeEEEecccccccCCCCCceeccccCCCCCCCC
Q 005034 508 IGFQLNPTPMKMPGIIIPSPDDSKILLQYYNSSLERDEVTKKIIKFGAVACILGGLKANFSNSAPKIMYYSARGPDPEDS 587 (718)
Q Consensus 508 ~~~~~~~~~~~~p~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~fSs~Gpt~~~~ 587 (718)
+.+++||++||..
T Consensus 164 ----------------------------------------------------------------~~~~~~s~~g~~~--- 176 (242)
T cd07498 164 ----------------------------------------------------------------DARASYSNYGNYV--- 176 (242)
T ss_pred ----------------------------------------------------------------CCccCcCCCCCCe---
Confidence 1357889999987
Q ss_pred CCCCCCCCCCceeccCCceeecccCCCCCCccccCccccccCchhhhhHHHHHHHHHHHHhCCCCCHHHHHHHHHhc
Q 005034 588 FLDDADIMKPNLVAPGNSIWAAWSSLGTDSVEFQGESFAMMSGTSMAAPHIAGLAALIKQKFPSFSPSAIASALSTS 664 (718)
Q Consensus 588 ~~~~~g~~KPDI~APG~~I~Sa~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~q~~p~ls~~~ik~~L~~T 664 (718)
|++|||.++++....... .....++.|..++|||||||+|||++|||+|++|+|+++|||++|+.|
T Consensus 177 ----------~~~apG~~~~~~~~~~~~-~~~~~~~~~~~~~GTS~Aap~vaG~~All~~~~p~l~~~~i~~~L~~t 242 (242)
T cd07498 177 ----------DLVAPGVGIWTTGTGRGS-AGDYPGGGYGSFSGTSFASPVAAGVAALILSANPNLTPAEVEDILTST 242 (242)
T ss_pred ----------EEEeCcCCcccCCccccc-cccCCCCceEeeCcHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHhC
Confidence 899999999888533211 111245688899999999999999999999999999999999999976
No 28
>cd04843 Peptidases_S8_11 Peptidase S8 family domain, uncharacterized subfamily 11. This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values.
Probab=100.00 E-value=2.6e-42 Score=358.10 Aligned_cols=247 Identities=22% Similarity=0.244 Sum_probs=179.3
Q ss_pred cccccCCCCCCCCCcEEEEEccccCCCCCCCcCCCCCCCCCCCCCCCccccccCCCCCCCCCceeeeeeecchhhhhcCc
Q 005034 175 AWIQEGGYETAGEGVVIGFIDTGIDPTHPSFADDASEHSYPVPSHFSGICEVTRDFPSGSCNRKLIGARHFAASAITRGI 254 (718)
Q Consensus 175 ~w~~~~~~~~~G~gv~VaVIDtGid~~Hp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~ 254 (718)
+|+... .+|+||+|+|||+|||.+||||.++... .+
T Consensus 7 aw~~~~---g~G~gV~VaviDtGid~~Hpdl~~~~~~-------~~---------------------------------- 42 (277)
T cd04843 7 AWTKPG---GSGQGVTFVDIEQGWNLNHEDLVGNGIT-------LI---------------------------------- 42 (277)
T ss_pred HHHhcC---CCCCcEEEEEecCCCCCCChhhcccccc-------cc----------------------------------
Confidence 787742 4589999999999999999999976430 00
Q ss_pred cCCCCCCCCCCCCCCCccccccccccCCCCCccccccccCccccccCCceEEEEeecccCCCCCHHHHHHHHHHHHH---
Q 005034 255 FNSSQDYASPFDGDGHGSHTASVAAGNHGIPVVVTGHHFGNASGMAPRSHIAVYKALYKSFGGFAADVVAAIDQAAQ--- 331 (718)
Q Consensus 255 ~~~~~~~~~~~d~~gHGThVAGiiag~~~~~~~~~g~~~~~~~GvAp~A~i~~~kv~~~~~~~~~~~i~~ai~~a~~--- 331 (718)
. ...+.|.++|||||||||+|..+. .++.||||+|+|+.+|+++ .++++++|.||++
T Consensus 43 -~----~~~~~d~~gHGT~VAGiIaa~~n~---------~G~~GvAp~a~l~~i~v~~------~~~~~~ai~~A~~~~~ 102 (277)
T cd04843 43 -S----GLTDQADSDHGTAVLGIIVAKDNG---------IGVTGIAHGAQAAVVSSTR------VSNTADAILDAADYLS 102 (277)
T ss_pred -C----CCCCCCCCCCcchhheeeeeecCC---------CceeeeccCCEEEEEEecC------CCCHHHHHHHHHhccC
Confidence 0 011457789999999999997431 2467999999999999986 2356677777776
Q ss_pred -CCCCEEEEcCCCCCCCCCC--CccccHHHHHHHHHHHCCCEEEEecCCCCCCCCCC------------CC-CCCceEEE
Q 005034 332 -DGVDIISLSITPNRRPPGI--ATFFNPIDMALLSAAKAGIFVVQAAGNTGPSPKSM------------SS-FSPWIFTV 395 (718)
Q Consensus 332 -~g~~ViN~S~G~~~~~~~~--~~~~~~~~~a~~~a~~~GilvV~AAGN~g~~~~~~------------~~-~~~~vitV 395 (718)
.++.+||||||........ ..+...+.++++++.++|+++|+||||++...... |. ..+++|+|
T Consensus 103 ~~~v~~in~s~g~~~~~~~~~p~~~~~~~~~av~~a~~~G~~vV~AAGN~~~~~~~~~~~~g~~~~~~~~~~~~~~vI~V 182 (277)
T cd04843 103 PGDVILLEMQTGGPNNGYPPLPVEYEQANFDAIRTATDLGIIVVEAAGNGGQDLDAPVYNRGPILNRFSPDFRDSGAIMV 182 (277)
T ss_pred CCCEEEEEccccCCCcCcccCcchhhHHHHHHHHHHHhCCcEEEEeCCCCCccccCcccccccccccCCcCcCCCCeEEE
Confidence 3466799999986432110 12345667789999999999999999998753211 11 12456666
Q ss_pred eeeccCCceeeeEEeCCCceEeeeccCCCCCceEEEEEcccccCCCCcccCCccccccCCCCCCccCCcCceEEEEEeec
Q 005034 396 GAASHDRIYTNSIILGNSLTISGVGLAPGTDKMYTLISALHALNNNTTTTDDMYVGECQDSSNFNQDLVQGNLLICSYSI 475 (718)
Q Consensus 396 gA~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~g~i~~~~~~~ 475 (718)
||++.+.
T Consensus 183 gA~~~~~------------------------------------------------------------------------- 189 (277)
T cd04843 183 GAGSSTT------------------------------------------------------------------------- 189 (277)
T ss_pred EeccCCC-------------------------------------------------------------------------
Confidence 6643210
Q ss_pred ccccCcchHHHHHHHHHhCCCcEEEEEeCCCccCcccCCCCCCCCeEEecCcchHHHHHHHHhccCCCccccceeeeece
Q 005034 476 RFVLGLSTIKQAFETAKNLSAAGIVFYMDPFVIGFQLNPTPMKMPGIIIPSPDDSKILLQYYNSSLERDEVTKKIIKFGA 555 (718)
Q Consensus 476 ~~~~~~~~~~~~~~~~~~~ga~~vi~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 555 (718)
T Consensus 190 -------------------------------------------------------------------------------- 189 (277)
T cd04843 190 -------------------------------------------------------------------------------- 189 (277)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred eEEEecccccccCCCCCceeccccCCCCCCCCCCCCCCCCCCceeccCCceeecccCCCCCCccccCccccccCchhhhh
Q 005034 556 VACILGGLKANFSNSAPKIMYYSARGPDPEDSFLDDADIMKPNLVAPGNSIWAAWSSLGTDSVEFQGESFAMMSGTSMAA 635 (718)
Q Consensus 556 ~~~~~~~~~~~~~~~~~~~a~fSs~Gpt~~~~~~~~~g~~KPDI~APG~~I~Sa~~~~~~~~~~~~~~~y~~~sGTSmAa 635 (718)
...++.||++||.. ||+|||.+|+++.............+.|..++||||||
T Consensus 190 ---------------~~~~~~fSn~G~~v-------------di~APG~~i~s~~~~~~~~~~~~~~~~~~~~sGTS~Aa 241 (277)
T cd04843 190 ---------------GHTRLAFSNYGSRV-------------DVYGWGENVTTTGYGDLQDLGGENQDYTDSFSGTSSAS 241 (277)
T ss_pred ---------------CCccccccCCCCcc-------------ceEcCCCCeEecCCCCcccccCCCCcceeeecccchhh
Confidence 01268899999976 89999999999985433211112233457899999999
Q ss_pred HHHHHHHHHHHH----h-CCCCCHHHHHHHHHhccc
Q 005034 636 PHIAGLAALIKQ----K-FPSFSPSAIASALSTSAT 666 (718)
Q Consensus 636 P~VAG~aALl~q----~-~p~ls~~~ik~~L~~TA~ 666 (718)
|||||++|||++ + +|+|+++|||++|++|+.
T Consensus 242 P~VaG~aALl~s~~~~~~~p~lt~~~v~~~L~~t~~ 277 (277)
T cd04843 242 PIVAGAAASIQGIAKQKGGTPLTPIEMRELLTATGT 277 (277)
T ss_pred HHHHHHHHHHHHHHhhcCCCCCCHHHHHHHHHhcCC
Confidence 999999999975 4 499999999999999974
No 29
>cd07473 Peptidases_S8_Subtilisin_like Peptidase S8 family domain in Subtilisin-like proteins. This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values.
Probab=100.00 E-value=4e-41 Score=349.06 Aligned_cols=253 Identities=30% Similarity=0.406 Sum_probs=194.2
Q ss_pred CCcEEEEEccccCCCCCCCcCCCCCCCCCCCCCCCccccccCCCCCCCCCceeeeeeecchhhhhcCccCCCCCCCCCCC
Q 005034 187 EGVVIGFIDTGIDPTHPSFADDASEHSYPVPSHFSGICEVTRDFPSGSCNRKLIGARHFAASAITRGIFNSSQDYASPFD 266 (718)
Q Consensus 187 ~gv~VaVIDtGid~~Hp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~d 266 (718)
+||+|||||||||++||+|.++.+.... ...+.+....+..+... ...++| .....++.|
T Consensus 2 ~~v~V~iiDtGid~~h~~l~~~~~~~~~--~~~~~~~~~~~~~~~~~------~~~~~~------------~~~~~~~~d 61 (259)
T cd07473 2 GDVVVAVIDTGVDYNHPDLKDNMWVNPG--EIPGNGIDDDGNGYVDD------IYGWNF------------VNNDNDPMD 61 (259)
T ss_pred CCCEEEEEeCCCCCCChhhccccccCcc--cccccCcccCCCCcccC------CCcccc------------cCCCCCCCC
Confidence 6899999999999999999987651110 00111111111111100 001111 112345568
Q ss_pred CCCCccccccccccCCCCCccccccccCccccccCCceEEEEeecccCCCCCHHHHHHHHHHHHHCCCCEEEEcCCCCCC
Q 005034 267 GDGHGSHTASVAAGNHGIPVVVTGHHFGNASGMAPRSHIAVYKALYKSFGGFAADVVAAIDQAAQDGVDIISLSITPNRR 346 (718)
Q Consensus 267 ~~gHGThVAGiiag~~~~~~~~~g~~~~~~~GvAp~A~i~~~kv~~~~~~~~~~~i~~ai~~a~~~g~~ViN~S~G~~~~ 346 (718)
..+|||||||||+|..+++ ..+.|+||+|+|+.+|++.....+...+++++|+++++.+++|||+|||....
T Consensus 62 ~~~HGT~va~ii~~~~~~~--------~~~~GvAp~a~l~~~~~~~~~~~~~~~~~~~a~~~a~~~~~~vin~S~G~~~~ 133 (259)
T cd07473 62 DNGHGTHVAGIIGAVGNNG--------IGIAGVAWNVKIMPLKFLGADGSGTTSDAIKAIDYAVDMGAKIINNSWGGGGP 133 (259)
T ss_pred CCCcHHHHHHHHHCcCCCC--------CceEEeCCCCEEEEEEEeCCCCCcCHHHHHHHHHHHHHCCCeEEEeCCCCCCC
Confidence 8999999999999986433 34579999999999999988666888999999999999999999999997642
Q ss_pred CCCCCccccHHHHHHHHHHHCCCEEEEecCCCCCC---CCCCCCC--CCceEEEeeeccCCceeeeEEeCCCceEeeecc
Q 005034 347 PPGIATFFNPIDMALLSAAKAGIFVVQAAGNTGPS---PKSMSSF--SPWIFTVGAASHDRIYTNSIILGNSLTISGVGL 421 (718)
Q Consensus 347 ~~~~~~~~~~~~~a~~~a~~~GilvV~AAGN~g~~---~~~~~~~--~~~vitVgA~~~~~~~~~~~~~~~~~~~~~~~~ 421 (718)
...+.+++..+.++|++||+||||++.. ...+|+. .+++|+||+++..
T Consensus 134 -------~~~~~~~~~~~~~~g~ivV~aaGN~g~~~~~~~~~p~~~~~~~vi~Vga~~~~-------------------- 186 (259)
T cd07473 134 -------SQALRDAIARAIDAGILFVAAAGNDGTNNDKTPTYPASYDLDNIISVAATDSN-------------------- 186 (259)
T ss_pred -------CHHHHHHHHHHHhCCCEEEEeCCCCCCCCCCCcCcCcccCCCCeEEEEecCCC--------------------
Confidence 4678888889999999999999999886 2345543 5788999885422
Q ss_pred CCCCCceEEEEEcccccCCCCcccCCccccccCCCCCCccCCcCceEEEEEeecccccCcchHHHHHHHHHhCCCcEEEE
Q 005034 422 APGTDKMYTLISALHALNNNTTTTDDMYVGECQDSSNFNQDLVQGNLLICSYSIRFVLGLSTIKQAFETAKNLSAAGIVF 501 (718)
Q Consensus 422 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~g~i~~~~~~~~~~~~~~~~~~~~~~~~~~ga~~vi~ 501 (718)
T Consensus 187 -------------------------------------------------------------------------------- 186 (259)
T cd07473 187 -------------------------------------------------------------------------------- 186 (259)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred EeCCCccCcccCCCCCCCCeEEecCcchHHHHHHHHhccCCCccccceeeeeceeEEEecccccccCCCCCceeccccCC
Q 005034 502 YMDPFVIGFQLNPTPMKMPGIIIPSPDDSKILLQYYNSSLERDEVTKKIIKFGAVACILGGLKANFSNSAPKIMYYSARG 581 (718)
Q Consensus 502 ~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~fSs~G 581 (718)
+.++.||++|
T Consensus 187 ----------------------------------------------------------------------~~~~~~s~~g 196 (259)
T cd07473 187 ----------------------------------------------------------------------DALASFSNYG 196 (259)
T ss_pred ----------------------------------------------------------------------CCcCcccCCC
Confidence 2345689988
Q ss_pred CCCCCCCCCCCCCCCCceeccCCceeecccCCCCCCccccCccccccCchhhhhHHHHHHHHHHHHhCCCCCHHHHHHHH
Q 005034 582 PDPEDSFLDDADIMKPNLVAPGNSIWAAWSSLGTDSVEFQGESFAMMSGTSMAAPHIAGLAALIKQKFPSFSPSAIASAL 661 (718)
Q Consensus 582 pt~~~~~~~~~g~~KPDI~APG~~I~Sa~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~q~~p~ls~~~ik~~L 661 (718)
|.. ||++|||.++++.. ..+.|..++|||||||+|||++|||+|++|.+++++||++|
T Consensus 197 ~~~------------~~~~apG~~~~~~~----------~~~~~~~~~GTS~AaP~vaG~~All~~~~~~~t~~~v~~~L 254 (259)
T cd07473 197 KKT------------VDLAAPGVDILSTS----------PGGGYGYMSGTSMATPHVAGAAALLLSLNPNLTAAQIKDAI 254 (259)
T ss_pred CCC------------cEEEeccCCeEecc----------CCCcEEEeccHhHHHHHHHHHHHHHHHhCCCCCHHHHHHHH
Confidence 754 49999999999976 56689999999999999999999999999999999999999
Q ss_pred Hhccc
Q 005034 662 STSAT 666 (718)
Q Consensus 662 ~~TA~ 666 (718)
++||+
T Consensus 255 ~~tA~ 259 (259)
T cd07473 255 LSSAD 259 (259)
T ss_pred HHhCC
Confidence 99985
No 30
>cd07477 Peptidases_S8_Subtilisin_subset Peptidase S8 family domain in Subtilisin proteins. This group is composed of many different subtilisins: Pro-TK-subtilisin, subtilisin Carlsberg, serine protease Pb92 subtilisin, and BPN subtilisins just to name a few. Pro-TK-subtilisin is a serine protease from the hyperthermophilic archaeon Thermococcus kodakaraensis and consists of a signal peptide, a propeptide, and a mature domain. TK-subtilisin is matured from pro-TK-subtilisin upon autoprocessing and degradation of the propeptide. Unlike other subtilisins though, the folding of the unprocessed form of pro-TK-subtilisin is induced by Ca2+ binding which is almost completed prior to autoprocessing. Ca2+ is required for activity unlike the bacterial subtilisins. The propeptide is not required for folding of the mature domain unlike the bacterial subtilases because of the stability produced from Ca2+ binding. Subtilisin Carlsberg is extremely similar in structure to subtilisin BPN'/Novo thoug
Probab=100.00 E-value=4.6e-41 Score=342.03 Aligned_cols=227 Identities=35% Similarity=0.563 Sum_probs=189.1
Q ss_pred CcEEEEEccccCCCCCCCcCCCCCCCCCCCCCCCccccccCCCCCCCCCceeeeeeecchhhhhcCccCCCCCCCCCCCC
Q 005034 188 GVVIGFIDTGIDPTHPSFADDASEHSYPVPSHFSGICEVTRDFPSGSCNRKLIGARHFAASAITRGIFNSSQDYASPFDG 267 (718)
Q Consensus 188 gv~VaVIDtGid~~Hp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~d~ 267 (718)
||+|||||+||+.+||+|.+... ...+|... ......|.
T Consensus 1 gv~V~iiDsGv~~~h~~l~~~~~------------------------------~~~~~~~~-----------~~~~~~~~ 39 (229)
T cd07477 1 GVKVAVIDTGIDSSHPDLKLNIV------------------------------GGANFTGD-----------DNNDYQDG 39 (229)
T ss_pred CCEEEEEcCCCCCCChhHhcccc------------------------------CcccccCC-----------CCCCCCCC
Confidence 79999999999999999987543 00111110 00234567
Q ss_pred CCCccccccccccCCCCCccccccccCccccccCCceEEEEeecccCCCCCHHHHHHHHHHHHHCCCCEEEEcCCCCCCC
Q 005034 268 DGHGSHTASVAAGNHGIPVVVTGHHFGNASGMAPRSHIAVYKALYKSFGGFAADVVAAIDQAAQDGVDIISLSITPNRRP 347 (718)
Q Consensus 268 ~gHGThVAGiiag~~~~~~~~~g~~~~~~~GvAp~A~i~~~kv~~~~~~~~~~~i~~ai~~a~~~g~~ViN~S~G~~~~~ 347 (718)
.+|||||||||++..+. ..+.|+||+|+|+.+|+++....+...+++++++|+++.+++|||||||....
T Consensus 40 ~~HGT~vA~ii~~~~~~---------~~~~giap~a~i~~~~~~~~~~~~~~~~l~~ai~~a~~~~~~Vin~S~g~~~~- 109 (229)
T cd07477 40 NGHGTHVAGIIAALDNG---------VGVVGVAPEADLYAVKVLNDDGSGTYSDIIAGIEWAIENGMDIINMSLGGPSD- 109 (229)
T ss_pred CCCHHHHHHHHhcccCC---------CccEeeCCCCEEEEEEEECCCCCcCHHHHHHHHHHHHHCCCCEEEECCccCCC-
Confidence 89999999999997543 24679999999999999988666788999999999999999999999997532
Q ss_pred CCCCccccHHHHHHHHHHHCCCEEEEecCCCCCCCCCC--CCCCCceEEEeeeccCCceeeeEEeCCCceEeeeccCCCC
Q 005034 348 PGIATFFNPIDMALLSAAKAGIFVVQAAGNTGPSPKSM--SSFSPWIFTVGAASHDRIYTNSIILGNSLTISGVGLAPGT 425 (718)
Q Consensus 348 ~~~~~~~~~~~~a~~~a~~~GilvV~AAGN~g~~~~~~--~~~~~~vitVgA~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 425 (718)
...+..+++.+.++|++||+||||++...... |+..+++|+||+++.+
T Consensus 110 ------~~~~~~~~~~a~~~giliv~aaGN~~~~~~~~~~pa~~~~vi~Vga~~~~------------------------ 159 (229)
T cd07477 110 ------SPALREAIKKAYAAGILVVAAAGNSGNGDSSYDYPAKYPSVIAVGAVDSN------------------------ 159 (229)
T ss_pred ------CHHHHHHHHHHHHCCCEEEEecCCCCCCCCCccCCCCCCCEEEEEeecCC------------------------
Confidence 35678888899999999999999999876664 8889999999996532
Q ss_pred CceEEEEEcccccCCCCcccCCccccccCCCCCCccCCcCceEEEEEeecccccCcchHHHHHHHHHhCCCcEEEEEeCC
Q 005034 426 DKMYTLISALHALNNNTTTTDDMYVGECQDSSNFNQDLVQGNLLICSYSIRFVLGLSTIKQAFETAKNLSAAGIVFYMDP 505 (718)
Q Consensus 426 ~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~g~i~~~~~~~~~~~~~~~~~~~~~~~~~~ga~~vi~~~~~ 505 (718)
T Consensus 160 -------------------------------------------------------------------------------- 159 (229)
T cd07477 160 -------------------------------------------------------------------------------- 159 (229)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CccCcccCCCCCCCCeEEecCcchHHHHHHHHhccCCCccccceeeeeceeEEEecccccccCCCCCceeccccCCCCCC
Q 005034 506 FVIGFQLNPTPMKMPGIIIPSPDDSKILLQYYNSSLERDEVTKKIIKFGAVACILGGLKANFSNSAPKIMYYSARGPDPE 585 (718)
Q Consensus 506 ~~~~~~~~~~~~~~p~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~fSs~Gpt~~ 585 (718)
+.++.||++|+..
T Consensus 160 ------------------------------------------------------------------~~~~~~s~~g~~~- 172 (229)
T cd07477 160 ------------------------------------------------------------------NNRASFSSTGPEV- 172 (229)
T ss_pred ------------------------------------------------------------------CCcCCccCCCCCc-
Confidence 1245689999876
Q ss_pred CCCCCCCCCCCCceeccCCceeecccCCCCCCccccCccccccCchhhhhHHHHHHHHHHHHhCCCCCHHHHHHHHHhc
Q 005034 586 DSFLDDADIMKPNLVAPGNSIWAAWSSLGTDSVEFQGESFAMMSGTSMAAPHIAGLAALIKQKFPSFSPSAIASALSTS 664 (718)
Q Consensus 586 ~~~~~~~g~~KPDI~APG~~I~Sa~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~q~~p~ls~~~ik~~L~~T 664 (718)
|++|||.+|+++. ..+.|..++|||||||+|||++|||+|++|++++++||++|++|
T Consensus 173 ------------~~~apg~~i~~~~----------~~~~~~~~~GTS~Aap~vag~~All~~~~~~~~~~~i~~~l~~t 229 (229)
T cd07477 173 ------------ELAAPGVDILSTY----------PNNDYAYLSGTSMATPHVAGVAALVWSKRPELTNAQVRQALNKT 229 (229)
T ss_pred ------------eEEeCCCCeEEec----------CCCCEEEEccHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHhC
Confidence 8999999999988 55688999999999999999999999999999999999999976
No 31
>cd07491 Peptidases_S8_7 Peptidase S8 family domain, uncharacterized subfamily 7. This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values.
Probab=100.00 E-value=1.7e-41 Score=346.42 Aligned_cols=161 Identities=22% Similarity=0.286 Sum_probs=121.5
Q ss_pred CCCcEEEEEccccCCCCCCCcCCCCCCCCCCCCCCCccccccCCCCCCCCCceeeeeeecchhhhhcCccCCCCCCCCCC
Q 005034 186 GEGVVIGFIDTGIDPTHPSFADDASEHSYPVPSHFSGICEVTRDFPSGSCNRKLIGARHFAASAITRGIFNSSQDYASPF 265 (718)
Q Consensus 186 G~gv~VaVIDtGid~~Hp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~ 265 (718)
+++|+|||||||||++||+|.++.. ....|..... +.........
T Consensus 2 ~~~V~VaVIDsGvd~~hpdl~~~i~-----~~~~~~~~~~------------------------------~~~~~~~~~~ 46 (247)
T cd07491 2 LKRIKVALIDDGVDILDSDLQGKII-----GGKSFSPYEG------------------------------DGNKVSPYYV 46 (247)
T ss_pred CCCCEEEEECCCcCCCchhhccccc-----cCCCCCCCCC------------------------------CcccCCCCCC
Confidence 6899999999999999999998643 0001110000 0000011224
Q ss_pred CCCCCccccccccccCCCCCccccccccCccccccCCceEEEEeecccCC------CCCHHHHHHHHHHHHHCCCCEEEE
Q 005034 266 DGDGHGSHTASVAAGNHGIPVVVTGHHFGNASGMAPRSHIAVYKALYKSF------GGFAADVVAAIDQAAQDGVDIISL 339 (718)
Q Consensus 266 d~~gHGThVAGiiag~~~~~~~~~g~~~~~~~GvAp~A~i~~~kv~~~~~------~~~~~~i~~ai~~a~~~g~~ViN~ 339 (718)
|..+|||||||||+ |+||+|+|+.+|+++... ......+++||+||+++|++||||
T Consensus 47 d~~gHGT~vAgiI~------------------gvap~a~i~~~kv~~~~~~~~~~~~~~~~~i~~Ai~~Ai~~gadIIn~ 108 (247)
T cd07491 47 SADGHGTAMARMIC------------------RICPSAKLYVIKLEDRPSPDSNKRSITPQSAAKAIEAAVEKKVDIISM 108 (247)
T ss_pred CCCCcHHHHHHHHH------------------HHCCCCeEEEEEecccCCCCCcccccCHHHHHHHHHHHHHCCCcEEEe
Confidence 68899999999995 799999999999998644 245678999999999999999999
Q ss_pred cCCCCCCCCCCCccccHHHHHHHHHHHCCCEEEEecCCCCCCCC-C--CCCCCCceEEEeeecc
Q 005034 340 SITPNRRPPGIATFFNPIDMALLSAAKAGIFVVQAAGNTGPSPK-S--MSSFSPWIFTVGAASH 400 (718)
Q Consensus 340 S~G~~~~~~~~~~~~~~~~~a~~~a~~~GilvV~AAGN~g~~~~-~--~~~~~~~vitVgA~~~ 400 (718)
|||....... ......+++++++|.++|++||+||||+|.... . +|+..++||+|||++.
T Consensus 109 S~g~~~~~~~-~~~~~~l~~ai~~A~~~GilvvaaAGN~g~~~~~~~~~pa~~~~Vi~VgA~~~ 171 (247)
T cd07491 109 SWTIKKPEDN-DNDINELENAIKEALDRGILLFCSASDQGAFTGDTYPPPAARDRIFRIGAADE 171 (247)
T ss_pred eeeccccccc-ccchHHHHHHHHHHHhCCeEEEEecCCCCCcCCCcccCcccCCCeEEEEeeCC
Confidence 9997643211 123578899999999999999999999998764 3 3566899999999754
No 32
>cd07482 Peptidases_S8_Lantibiotic_specific_protease Peptidase S8 family domain in Lantiobiotic (lanthionine-containing antibiotics) specific proteases. Lantiobiotic (lanthionine-containing antibiotics) specific proteases are very similar in structure to serine proteases. Lantibiotics are ribosomally synthesised antimicrobial agents derived from ribosomally synthesised peptides with antimicrobial activities against Gram-positive bacteria. The proteases that cleave the N-terminal leader peptides from lantiobiotics include: epiP, nsuP, mutP, and nisP. EpiP, from Staphylococcus, is thought to cleave matured epidermin. NsuP, a dehydratase from Streptococcus and NisP, a membrane-anchored subtilisin-like serine protease from Lactococcus cleave nisin. MutP is highly similar to epiP and nisP and is thought to process the prepeptide mutacin III of S. mutans. Members of the peptidases S8 (subtilisin and kexin) and S53 (sedolisin) clan include endopeptidases and exopeptidases. The S8 family h
Probab=100.00 E-value=1.2e-40 Score=352.19 Aligned_cols=155 Identities=30% Similarity=0.379 Sum_probs=111.3
Q ss_pred CcEEEEEccccCCCCCCCcCCCCCCCCCCCCCCCccccccCCCCCCCCCceeeeeeecchhhhhcCccCCCCCCCCCCCC
Q 005034 188 GVVIGFIDTGIDPTHPSFADDASEHSYPVPSHFSGICEVTRDFPSGSCNRKLIGARHFAASAITRGIFNSSQDYASPFDG 267 (718)
Q Consensus 188 gv~VaVIDtGid~~Hp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~d~ 267 (718)
.|+||||||||+++||+|.+....... .+ ... ..+... ......+.....|.
T Consensus 1 ~V~VaviDtGi~~~hp~l~~~~~~~~~----~~----~~~---------------~~~~~~-----~~~~~~~~~~~~d~ 52 (294)
T cd07482 1 KVTVAVIDSGIDPDHPDLKNSISSYSK----NL----VPK---------------GGYDGK-----EAGETGDINDIVDK 52 (294)
T ss_pred CcEEEEEeCCCCCCChhHhhccccccc----cc----ccC---------------CCcCCc-----cccccCCCCcCCCC
Confidence 389999999999999999975430000 00 000 000000 00001112344678
Q ss_pred CCCccccccccccCCCCCccccccccCccccccCCceEEEEeecccCCCCCHHHHHHHHHHHHHCCCCEEEEcCCCCCCC
Q 005034 268 DGHGSHTASVAAGNHGIPVVVTGHHFGNASGMAPRSHIAVYKALYKSFGGFAADVVAAIDQAAQDGVDIISLSITPNRRP 347 (718)
Q Consensus 268 ~gHGThVAGiiag~~~~~~~~~g~~~~~~~GvAp~A~i~~~kv~~~~~~~~~~~i~~ai~~a~~~g~~ViN~S~G~~~~~ 347 (718)
.+|||||||+|+|..+ ..||||+|+|+.+|+++........+++++|+|+++++++|||||||.....
T Consensus 53 ~gHGT~vAgiia~~~~------------~~GvAp~a~i~~~~v~~~~~~~~~~~~~~ai~~a~~~~~~vin~S~G~~~~~ 120 (294)
T cd07482 53 LGHGTAVAGQIAANGN------------IKGVAPGIGIVSYRVFGSCGSAESSWIIKAIIDAADDGVDVINLSLGGYLII 120 (294)
T ss_pred CCcHhHHHHHHhcCCC------------CceeCCCCEEEEEEeecCCCCcCHHHHHHHHHHHHHCCCCEEEeCCccCCCC
Confidence 8999999999998742 2499999999999999875556889999999999999999999999975433
Q ss_pred CCC----CccccHHHHHHHHHHHCCCEEEEecCCCCCCC
Q 005034 348 PGI----ATFFNPIDMALLSAAKAGIFVVQAAGNTGPSP 382 (718)
Q Consensus 348 ~~~----~~~~~~~~~a~~~a~~~GilvV~AAGN~g~~~ 382 (718)
... ....+.+.++++.+.++|++||+||||+|...
T Consensus 121 ~~~~~~~~~~~~~~~~~i~~a~~~g~lvv~AAGN~g~~~ 159 (294)
T cd07482 121 GGEYEDDDVEYNAYKKAINYAKSKGSIVVAAAGNDGLDV 159 (294)
T ss_pred CcccccchhhhHHHHHHHHHHHHCCCEEEEeCCCCCccc
Confidence 211 22345678888889999999999999999754
No 33
>PF00082 Peptidase_S8: Subtilase family This is family S8 in the peptidase classification. ; InterPro: IPR000209 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This group of serine peptidases belong to the MEROPS peptidase families S8 (subfamilies S8A (subtilisin) and S8B (kexin)) and S53 (sedolisin) both of which are members of clan SB. The subtilisin family is the second largest serine protease family characterised to date. Over 200 subtilises are presently known, more than 170 of which with their complete amino acid sequence []. It is widespread, being found in eubacteria, archaebacteria, eukaryotes and viruses []. The vast majority of the family are endopeptidases, although there is an exopeptidase, tripeptidyl peptidase [, ]. Structures have been determined for several members of the subtilisin family: they exploit the same catalytic triad as the chymotrypsins, although the residues occur in a different order (HDS in chymotrypsin and DHS in subtilisin), but the structures show no other similarity [, ]. Some subtilisins are mosaic proteins, while others contain N- and C-terminal extensions that show no sequence similarity to any other known protein []. Based on sequence homology, a subdivision into six families has been proposed []. The proprotein-processing endopeptidases kexin, furin and related enzymes form a distinct subfamily known as the kexin subfamily (S8B). These preferentially cleave C-terminally to paired basic amino acids. Members of this subfamily can be identified by subtly different motifs around the active site [, ]. Members of the kexin family, along with endopeptidases R, T and K from the yeast Tritirachium and cuticle-degrading peptidase from Metarhizium, require thiol activation. This can be attributed to the presence of Cys-173 near to the active histidine [].Only 1 viral member of the subtilisin family is known, a 56kDa protease from herpes virus 1, which infects the channel catfish []. Sedolisins (serine-carboxyl peptidases) are proteolytic enzymes whose fold resembles that of subtilisin; however, they are considerably larger, with the mature catalytic domains containing approximately 375 amino acids. The defining features of these enzymes are a unique catalytic triad, Ser-Glu-Asp, as well as the presence of an aspartic acid residue in the oxyanion hole. High-resolution crystal structures have now been solved for sedolisin from Pseudomonas sp. 101, as well as for kumamolisin from a thermophilic bacterium, Bacillus sp. MN-32. Mutations in the human gene leads to a fatal neurodegenerative disease []. ; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 3EIF_A 1XF1_B 3F7M_A 3F7O_B 2QTW_B 2W2O_A 3GCX_A 3P5B_A 3M0C_B 2XTJ_A ....
Probab=100.00 E-value=2.6e-41 Score=355.01 Aligned_cols=276 Identities=35% Similarity=0.563 Sum_probs=210.1
Q ss_pred EEEEEccccCCCCCCCc-CCCCCCCCCCCCCCCccccccCCCCCCCCCceeeeeeecchhhhhcCccCCCCCCCCCCCCC
Q 005034 190 VIGFIDTGIDPTHPSFA-DDASEHSYPVPSHFSGICEVTRDFPSGSCNRKLIGARHFAASAITRGIFNSSQDYASPFDGD 268 (718)
Q Consensus 190 ~VaVIDtGid~~Hp~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~d~~ 268 (718)
+|||||+|||++||+|. ++.. ..++.+.+.|.+.. .......|..
T Consensus 1 ~V~viDtGid~~h~~~~~~~~~-------------------------~~~~~~~~~~~~~~---------~~~~~~~~~~ 46 (282)
T PF00082_consen 1 KVAVIDTGIDPNHPDFSSGNFI-------------------------WSKVPGGYNFVDGN---------PNPSPSDDDN 46 (282)
T ss_dssp EEEEEESBBTTTSTTTTCTTEE-------------------------EEEEEEEEETTTTB---------STTTSSSTSS
T ss_pred CEEEEcCCcCCCChhHccCCcc-------------------------cccccceeeccCCC---------CCcCccccCC
Confidence 69999999999999999 4322 11233444554431 1124456788
Q ss_pred CCccccccccccCC-CCCccccccccCccccccCCceEEEEeecccCCCCCHHHHHHHHHHHH-HCCCCEEEEcCCCCCC
Q 005034 269 GHGSHTASVAAGNH-GIPVVVTGHHFGNASGMAPRSHIAVYKALYKSFGGFAADVVAAIDQAA-QDGVDIISLSITPNRR 346 (718)
Q Consensus 269 gHGThVAGiiag~~-~~~~~~~g~~~~~~~GvAp~A~i~~~kv~~~~~~~~~~~i~~ai~~a~-~~g~~ViN~S~G~~~~ 346 (718)
+|||||||||+|.. .++ ....|+||+|+|+.+|++.... ....+++++|++++ +.+++|||||||....
T Consensus 47 ~HGT~va~ii~~~~~~~~--------~~~~Gva~~a~l~~~~i~~~~~-~~~~~~~~ai~~~~~~~~~~Vin~S~G~~~~ 117 (282)
T PF00082_consen 47 GHGTHVAGIIAGNGGNNG--------PGINGVAPNAKLYSYKIFDNSG-GTSSDLIEAIEYAVKNDGVDVINLSFGSNSG 117 (282)
T ss_dssp SHHHHHHHHHHHTTSSSS--------SSETCSSTTSEEEEEECSSTTS-EEHHHHHHHHHHHHHHTTSSEEEECEEBEES
T ss_pred Cccchhhhhccccccccc--------cccccccccccccccccccccc-cccccccchhhhhhhccCCcccccccccccc
Confidence 99999999999985 221 3458999999999999987744 77888999999999 8899999999987321
Q ss_pred CCCCCccccHHHHHHHHHHHCCCEEEEecCCCCCCCC---CCCCCCCceEEEeeeccCCceeeeEEeCCCceEeeeccCC
Q 005034 347 PPGIATFFNPIDMALLSAAKAGIFVVQAAGNTGPSPK---SMSSFSPWIFTVGAASHDRIYTNSIILGNSLTISGVGLAP 423 (718)
Q Consensus 347 ~~~~~~~~~~~~~a~~~a~~~GilvV~AAGN~g~~~~---~~~~~~~~vitVgA~~~~~~~~~~~~~~~~~~~~~~~~~~ 423 (718)
.. .....+.+..+++.+.++|+++|+||||++.... ..|+..+++|+||+++..
T Consensus 118 ~~-~~~~~~~~~~~~~~~~~~g~l~v~aaGN~~~~~~~~~~~Pa~~~~vi~Vg~~~~~---------------------- 174 (282)
T PF00082_consen 118 PP-DPSYSDILEEAIDYAEKKGILIVFAAGNNGPNDDRNISFPASSPNVITVGAVDNN---------------------- 174 (282)
T ss_dssp SS-HSHHHHHHHHHHHHHHHTTEEEEEE--SSSSBTTBTGEBTTTSTTSEEEEEEETT----------------------
T ss_pred cc-ccccccccccccccccccCcceeeccccccccccccccccccccccccccccccc----------------------
Confidence 11 1223456777888899999999999999988664 367777899999986422
Q ss_pred CCCceEEEEEcccccCCCCcccCCccccccCCCCCCccCCcCceEEEEEeecccccCcchHHHHHHHHHhCCCcEEEEEe
Q 005034 424 GTDKMYTLISALHALNNNTTTTDDMYVGECQDSSNFNQDLVQGNLLICSYSIRFVLGLSTIKQAFETAKNLSAAGIVFYM 503 (718)
Q Consensus 424 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~g~i~~~~~~~~~~~~~~~~~~~~~~~~~~ga~~vi~~~ 503 (718)
T Consensus 175 -------------------------------------------------------------------------------- 174 (282)
T PF00082_consen 175 -------------------------------------------------------------------------------- 174 (282)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCccCcccCCCCCCCCeEEecCcchHHHHHHHHhccCCCccccceeeeeceeEEEecccccccCCCCCceeccccCCCC
Q 005034 504 DPFVIGFQLNPTPMKMPGIIIPSPDDSKILLQYYNSSLERDEVTKKIIKFGAVACILGGLKANFSNSAPKIMYYSARGPD 583 (718)
Q Consensus 504 ~~~~~~~~~~~~~~~~p~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~fSs~Gpt 583 (718)
+.++.||++|+.
T Consensus 175 --------------------------------------------------------------------~~~~~~s~~g~~ 186 (282)
T PF00082_consen 175 --------------------------------------------------------------------GQPASYSNYGGP 186 (282)
T ss_dssp --------------------------------------------------------------------SSBSTTSSBSTT
T ss_pred --------------------------------------------------------------------cccccccccccc
Confidence 124778999766
Q ss_pred CCCCCCCCCCCCCCceeccCCceeecccCCCCCCccccCccccccCchhhhhHHHHHHHHHHHHhCCCCCHHHHHHHHHh
Q 005034 584 PEDSFLDDADIMKPNLVAPGNSIWAAWSSLGTDSVEFQGESFAMMSGTSMAAPHIAGLAALIKQKFPSFSPSAIASALST 663 (718)
Q Consensus 584 ~~~~~~~~~g~~KPDI~APG~~I~Sa~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~q~~p~ls~~~ik~~L~~ 663 (718)
... +++||||+|||.+|++..+... ...|..++|||||||+|||++|||+|++|++++.+||.+|++
T Consensus 187 ~~~------~~~~~di~a~G~~i~~~~~~~~-------~~~~~~~~GTS~Aap~vag~~All~~~~p~~~~~~i~~~l~~ 253 (282)
T PF00082_consen 187 SDD------GRIKPDIAAPGGNILSAVPGSD-------RGSYTSFSGTSFAAPVVAGAAALLLSKYPNLTPAEIKALLIN 253 (282)
T ss_dssp ETT------CTTCEEEEEECSSEEEEETTTE-------SEEEEEEESHHHHHHHHHHHHHHHHHHSTTSHHHHHHHHHHH
T ss_pred ccc------cccccccccccccccccccccc-------cccccccCcCCchHHHHHHHHHHHHHHCCCCCHHHHHHHHHH
Confidence 532 7999999999999988874321 135788999999999999999999999999999999999999
Q ss_pred cccccccCCCccccccccCCCCCCCCCCCCCccccccccccccCC
Q 005034 664 SATLYDKNGGPIMAQRAYAKPDENQSPATPFDMGSGFVNATASLD 708 (718)
Q Consensus 664 TA~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~G~vn~~~Al~ 708 (718)
||.++.... ....+..+|||++|+.+||+
T Consensus 254 ta~~~~~~~----------------~~~~~~~~G~G~in~~~a~~ 282 (282)
T PF00082_consen 254 TADDLGSTN----------------GEGYDNSYGWGLINAEKALN 282 (282)
T ss_dssp HSBESSETT----------------SSSSHHHHTTSBE-HHHHHH
T ss_pred hCcccCcCC----------------CCCCCCCccCChhCHHHHhC
Confidence 999887221 12335678999999999874
No 34
>cd07492 Peptidases_S8_8 Peptidase S8 family domain, uncharacterized subfamily 8. This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values.
Probab=100.00 E-value=4.3e-40 Score=333.09 Aligned_cols=151 Identities=25% Similarity=0.237 Sum_probs=118.5
Q ss_pred CcEEEEEccccCCCCCCCcCCCCCCCCCCCCCCCccccccCCCCCCCCCceeeeeeecchhhhhcCccCCCCCCCCCCCC
Q 005034 188 GVVIGFIDTGIDPTHPSFADDASEHSYPVPSHFSGICEVTRDFPSGSCNRKLIGARHFAASAITRGIFNSSQDYASPFDG 267 (718)
Q Consensus 188 gv~VaVIDtGid~~Hp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~d~ 267 (718)
||+|||||||||++||+|.++.. .+. .+... +...+.....|.
T Consensus 1 gV~VaViDsGi~~~h~~l~~~~~--------~~~----------------------~~~~~-------~~~~~~~~~~d~ 43 (222)
T cd07492 1 GVRVAVIDSGVDTDHPDLGNLAL--------DGE----------------------VTIDL-------EIIVVSAEGGDK 43 (222)
T ss_pred CCEEEEEeCCCCCCChhhhcccc--------ccc----------------------ccccc-------ccccCCCCCCCC
Confidence 79999999999999999998654 000 00000 000112344578
Q ss_pred CCCccccccccccCCCCCccccccccCccccccCCceEEEEeecccCCCCCHHHHHHHHHHHHHCCCCEEEEcCCCCCCC
Q 005034 268 DGHGSHTASVAAGNHGIPVVVTGHHFGNASGMAPRSHIAVYKALYKSFGGFAADVVAAIDQAAQDGVDIISLSITPNRRP 347 (718)
Q Consensus 268 ~gHGThVAGiiag~~~~~~~~~g~~~~~~~GvAp~A~i~~~kv~~~~~~~~~~~i~~ai~~a~~~g~~ViN~S~G~~~~~ 347 (718)
.+|||||||||+ +.+|+++|+.+|+++....+...++++||+|+++++++|||||||.....
T Consensus 44 ~gHGT~vAgiia------------------~~~p~~~i~~~~v~~~~~~~~~~~~~~ai~~a~~~~v~Vin~S~G~~~~~ 105 (222)
T cd07492 44 DGHGTACAGIIK------------------KYAPEAEIGSIKILGEDGRCNSFVLEKALRACVENDIRIVNLSLGGPGDR 105 (222)
T ss_pred CCcHHHHHHHHH------------------ccCCCCeEEEEEEeCCCCCcCHHHHHHHHHHHHHCCCCEEEeCCCCCCCC
Confidence 899999999997 44699999999999886668888999999999999999999999976432
Q ss_pred CCCCccccHHHHHHHHHHHCCCEEEEecCCCCCCCCCCCCCCCceEEEeeec
Q 005034 348 PGIATFFNPIDMALLSAAKAGIFVVQAAGNTGPSPKSMSSFSPWIFTVGAAS 399 (718)
Q Consensus 348 ~~~~~~~~~~~~a~~~a~~~GilvV~AAGN~g~~~~~~~~~~~~vitVgA~~ 399 (718)
....+.++++++.++|+++|+||||++.... +|+..++||+||+.+
T Consensus 106 -----~~~~~~~~~~~a~~~g~l~V~aagN~~~~~~-~Pa~~~~vi~V~~~~ 151 (222)
T cd07492 106 -----DFPLLKELLEYAYKAGGIIVAAAPNNNDIGT-PPASFPNVIGVKSDT 151 (222)
T ss_pred -----cCHHHHHHHHHHHHCCCEEEEECCCCCCCCC-CCccCCceEEEEecC
Confidence 2357788888999999999999999987543 478889999999853
No 35
>cd04059 Peptidases_S8_Protein_convertases_Kexins_Furin-like Peptidase S8 family domain in Protein convertases. Protein convertases, whose members include furins and kexins, are members of the peptidase S8 or Subtilase clan of proteases. They have an Asp/His/Ser catalytic triad that is not homologous to trypsin. Kexins are involved in the activation of peptide hormones, growth factors, and viral proteins. Furin cleaves cell surface vasoactive peptides and proteins involved in cardiovascular tissue remodeling in the TGN, at cell surface, or in endosomes but rarely in the ER. Furin also plays a key role in blood pressure regulation though the activation of transforming growth factor (TGF)-beta. High specificity is seen for cleavage after dibasic (Lys-Arg or Arg-Arg) or multiple basic residues in protein convertases. There is also strong sequence conservation.
Probab=100.00 E-value=9.5e-40 Score=345.63 Aligned_cols=249 Identities=24% Similarity=0.271 Sum_probs=178.7
Q ss_pred cccccCCCCCCCCCcEEEEEccccCCCCCCCcCCCCCCCCCCCCCCCccccccCCCCCCCCCceeeeeeecchhhhhcCc
Q 005034 175 AWIQEGGYETAGEGVVIGFIDTGIDPTHPSFADDASEHSYPVPSHFSGICEVTRDFPSGSCNRKLIGARHFAASAITRGI 254 (718)
Q Consensus 175 ~w~~~~~~~~~G~gv~VaVIDtGid~~Hp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~ 254 (718)
+|.. +++|+||+|+|||||||++||+|.++.. ....| +|...
T Consensus 31 ~w~~----g~~G~gv~VaViDtGv~~~h~~l~~~~~-----~~~~~-----------------------~~~~~------ 72 (297)
T cd04059 31 AWEQ----GITGKGVTVAVVDDGLEITHPDLKDNYD-----PEASY-----------------------DFNDN------ 72 (297)
T ss_pred HHhC----CCCCcceEEEEEeCCcccCCHhHhhccc-----ccccc-----------------------cccCC------
Confidence 6665 7999999999999999999999997643 00111 11110
Q ss_pred cCCCCCCCCC--CCCCCCccccccccccCCCCCccccccccCccccccCCceEEEEeecccCCCCCHHHHHHHHHHHHHC
Q 005034 255 FNSSQDYASP--FDGDGHGSHTASVAAGNHGIPVVVTGHHFGNASGMAPRSHIAVYKALYKSFGGFAADVVAAIDQAAQD 332 (718)
Q Consensus 255 ~~~~~~~~~~--~d~~gHGThVAGiiag~~~~~~~~~g~~~~~~~GvAp~A~i~~~kv~~~~~~~~~~~i~~ai~~a~~~ 332 (718)
. ....+ .|..+|||||||||+|..+.. .+..||||+|+|+.+|+++.. .....+..++.++.+
T Consensus 73 ---~-~~~~~~~~~~~gHGT~vAgiiag~~~~~--------~~~~GvAp~a~l~~~~~~~~~--~~~~~~~~~~~~~~~- 137 (297)
T cd04059 73 ---D-PDPTPRYDDDNSHGTRCAGEIAAVGNNG--------ICGVGVAPGAKLGGIRMLDGD--VTDVVEAESLGLNPD- 137 (297)
T ss_pred ---C-CCCCCccccccccCcceeeEEEeecCCC--------cccccccccceEeEEEecCCc--cccHHHHHHHhcccC-
Confidence 0 00111 277899999999999986432 145799999999999999763 233344555555544
Q ss_pred CCCEEEEcCCCCCCCCCCCccccHHHHHHHHHHH-----CCCEEEEecCCCCCCCC----CCCCCCCceEEEeeeccCCc
Q 005034 333 GVDIISLSITPNRRPPGIATFFNPIDMALLSAAK-----AGIFVVQAAGNTGPSPK----SMSSFSPWIFTVGAASHDRI 403 (718)
Q Consensus 333 g~~ViN~S~G~~~~~~~~~~~~~~~~~a~~~a~~-----~GilvV~AAGN~g~~~~----~~~~~~~~vitVgA~~~~~~ 403 (718)
.++|||||||..............+.++++.+.. +|++||+||||+|.... ..+...+++|+|||++.+
T Consensus 138 ~~~Vin~S~g~~~~~~~~~~~~~~~~~a~~~a~~~~~~~~gilvV~AAGN~g~~~~~~~~~~~~~~~~vi~Vga~~~~-- 215 (297)
T cd04059 138 YIDIYSNSWGPDDDGKTVDGPGPLAQRALENGVTNGRNGKGSIFVWAAGNGGNLGDNCNCDGYNNSIYTISVSAVTAN-- 215 (297)
T ss_pred CceEEECCCCCCCCCCccCCCcHHHHHHHHHHHHhCCCCCceEEEEeCCCCCCCCCCCCCCcccCCCceEEEEeeCCC--
Confidence 4699999999765432111223344455555543 69999999999998322 122457889999986432
Q ss_pred eeeeEEeCCCceEeeeccCCCCCceEEEEEcccccCCCCcccCCccccccCCCCCCccCCcCceEEEEEeecccccCcch
Q 005034 404 YTNSIILGNSLTISGVGLAPGTDKMYTLISALHALNNNTTTTDDMYVGECQDSSNFNQDLVQGNLLICSYSIRFVLGLST 483 (718)
Q Consensus 404 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~g~i~~~~~~~~~~~~~~~ 483 (718)
T Consensus 216 -------------------------------------------------------------------------------- 215 (297)
T cd04059 216 -------------------------------------------------------------------------------- 215 (297)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHHHHHhCCCcEEEEEeCCCccCcccCCCCCCCCeEEecCcchHHHHHHHHhccCCCccccceeeeeceeEEEeccc
Q 005034 484 IKQAFETAKNLSAAGIVFYMDPFVIGFQLNPTPMKMPGIIIPSPDDSKILLQYYNSSLERDEVTKKIIKFGAVACILGGL 563 (718)
Q Consensus 484 ~~~~~~~~~~~ga~~vi~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 563 (718)
T Consensus 216 -------------------------------------------------------------------------------- 215 (297)
T cd04059 216 -------------------------------------------------------------------------------- 215 (297)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred ccccCCCCCceeccccCCCCCCCCCCCCCCCCCCceeccCCc-------eeecccCCCCCCccccCccccccCchhhhhH
Q 005034 564 KANFSNSAPKIMYYSARGPDPEDSFLDDADIMKPNLVAPGNS-------IWAAWSSLGTDSVEFQGESFAMMSGTSMAAP 636 (718)
Q Consensus 564 ~~~~~~~~~~~a~fSs~Gpt~~~~~~~~~g~~KPDI~APG~~-------I~Sa~~~~~~~~~~~~~~~y~~~sGTSmAaP 636 (718)
+.++.||++|+.. +++|||.. |+++.... ..+.|..++|||||||
T Consensus 216 --------g~~~~~s~~g~~~-------------~~~a~g~~~~~~~~~i~~~~~~~-------~~~~~~~~sGTS~AaP 267 (297)
T cd04059 216 --------GVRASYSEVGSSV-------------LASAPSGGSGNPEASIVTTDLGG-------NCNCTSSHNGTSAAAP 267 (297)
T ss_pred --------CCCcCCCCCCCcE-------------EEEecCCCCCCCCCceEeCCCCC-------CCCcccccCCcchhhh
Confidence 2356789999887 79999887 66665321 1256789999999999
Q ss_pred HHHHHHHHHHHhCCCCCHHHHHHHHHhccc
Q 005034 637 HIAGLAALIKQKFPSFSPSAIASALSTSAT 666 (718)
Q Consensus 637 ~VAG~aALl~q~~p~ls~~~ik~~L~~TA~ 666 (718)
+|||++|||+|++|+|++.|||.+|++||+
T Consensus 268 ~VAG~aAll~~~~p~lt~~~v~~~L~~TA~ 297 (297)
T cd04059 268 LAAGVIALMLEANPNLTWRDVQHILALTAR 297 (297)
T ss_pred hhHhHHHHhhccCCCCCHHHHHHHHHHhcC
Confidence 999999999999999999999999999995
No 36
>cd04848 Peptidases_S8_Autotransporter_serine_protease_like Peptidase S8 family domain in Autotransporter serine proteases. Autotransporter serine proteases belong to Peptidase S8 or Subtilase family. Subtilases, or subtilisin-like serine proteases, have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure (an example of convergent evolution). Autotransporters are a superfamily of outer membrane/secreted proteins of gram-negative bacteria. The presence of these subtilisin-like domains in these autotransporters are may enable them to be auto-catalytic and may also serve to allow them to act as a maturation protease cleaving other outer membrane proteins at the cell surface.
Probab=100.00 E-value=5.8e-39 Score=334.24 Aligned_cols=247 Identities=38% Similarity=0.467 Sum_probs=190.4
Q ss_pred CCCCcEEEEEccccCCCCCCCcCCCCCCCCCCCCCCCccccccCCCCCCCCCceeeeeeecchhhhhcCccCCCCCCCCC
Q 005034 185 AGEGVVIGFIDTGIDPTHPSFADDASEHSYPVPSHFSGICEVTRDFPSGSCNRKLIGARHFAASAITRGIFNSSQDYASP 264 (718)
Q Consensus 185 ~G~gv~VaVIDtGid~~Hp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~ 264 (718)
+|+||+|||||+||+.+||+|.+........ .+ .........
T Consensus 1 tG~gv~VaiiDsG~~~~h~~l~~~~~~~~~~---~~-----------------------------------~~~~~~~~~ 42 (267)
T cd04848 1 TGAGVKVGVIDSGIDLSHPEFAGRVSEASYY---VA-----------------------------------VNDAGYASN 42 (267)
T ss_pred CCCceEEEEEeCCCCCCCccccCcccccccc---cc-----------------------------------cccccCCCC
Confidence 6999999999999999999999865400000 00 000001234
Q ss_pred CCCCCCccccccccccCCCCCccccccccCccccccCCceEEEEeecccCC-CCCHHHHHHHHHHHHHCCCCEEEEcCCC
Q 005034 265 FDGDGHGSHTASVAAGNHGIPVVVTGHHFGNASGMAPRSHIAVYKALYKSF-GGFAADVVAAIDQAAQDGVDIISLSITP 343 (718)
Q Consensus 265 ~d~~gHGThVAGiiag~~~~~~~~~g~~~~~~~GvAp~A~i~~~kv~~~~~-~~~~~~i~~ai~~a~~~g~~ViN~S~G~ 343 (718)
.|..+|||||||+|+|+.++ ..+.|+||+|+|+.+|+++... ......+.++++++.+.+++|||||||.
T Consensus 43 ~~~~~HGT~vagiiag~~~~---------~~~~GiAp~a~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Vin~S~g~ 113 (267)
T cd04848 43 GDGDSHGTHVAGVIAAARDG---------GGMHGVAPDATLYSARASASAGSTFSDADIAAAYDFLAASGVRIINNSWGG 113 (267)
T ss_pred CCCCChHHHHHHHHhcCcCC---------CCcccCCcCCEEEEEeccCCCCcccchHHHHHHHHHHHhCCCeEEEccCCC
Confidence 56789999999999998643 3568999999999999998754 4667788999999999999999999998
Q ss_pred CCCCCCC--------CccccHHHHHHHHHHHCCCEEEEecCCCCCCCCCC---------CCCCCceEEEeeeccCCceee
Q 005034 344 NRRPPGI--------ATFFNPIDMALLSAAKAGIFVVQAAGNTGPSPKSM---------SSFSPWIFTVGAASHDRIYTN 406 (718)
Q Consensus 344 ~~~~~~~--------~~~~~~~~~a~~~a~~~GilvV~AAGN~g~~~~~~---------~~~~~~vitVgA~~~~~~~~~ 406 (718)
....... ......+..+++.+.++|++||+||||++...... ++..+++|+||+++.+..
T Consensus 114 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gi~iv~aaGN~~~~~~~~~~~~~~~~~~~~~~~vi~Vga~~~~~~--- 190 (267)
T cd04848 114 NPAIDTVSTTYKGSAATQGNTLLAALARAANAGGLFVFAAGNDGQANPSLAAAALPYLEPELEGGWIAVVAVDPNGT--- 190 (267)
T ss_pred CCcccccccchhhhccccchHHHHHHHHHhhCCeEEEEeCCCCCCCCCccccccccccCccccCCEEEEEEecCCCC---
Confidence 7533210 12456778888899999999999999998754333 234578888888754321
Q ss_pred eEEeCCCceEeeeccCCCCCceEEEEEcccccCCCCcccCCccccccCCCCCCccCCcCceEEEEEeecccccCcchHHH
Q 005034 407 SIILGNSLTISGVGLAPGTDKMYTLISALHALNNNTTTTDDMYVGECQDSSNFNQDLVQGNLLICSYSIRFVLGLSTIKQ 486 (718)
Q Consensus 407 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~g~i~~~~~~~~~~~~~~~~~~ 486 (718)
T Consensus 191 -------------------------------------------------------------------------------- 190 (267)
T cd04848 191 -------------------------------------------------------------------------------- 190 (267)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHHhCCCcEEEEEeCCCccCcccCCCCCCCCeEEecCcchHHHHHHHHhccCCCccccceeeeeceeEEEecccccc
Q 005034 487 AFETAKNLSAAGIVFYMDPFVIGFQLNPTPMKMPGIIIPSPDDSKILLQYYNSSLERDEVTKKIIKFGAVACILGGLKAN 566 (718)
Q Consensus 487 ~~~~~~~~ga~~vi~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 566 (718)
T Consensus 191 -------------------------------------------------------------------------------- 190 (267)
T cd04848 191 -------------------------------------------------------------------------------- 190 (267)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cCCCCCceec--cccCCCCCCCCCCCCCCCCCCceeccCCceeecccCCCCCCccccCccccccCchhhhhHHHHHHHHH
Q 005034 567 FSNSAPKIMY--YSARGPDPEDSFLDDADIMKPNLVAPGNSIWAAWSSLGTDSVEFQGESFAMMSGTSMAAPHIAGLAAL 644 (718)
Q Consensus 567 ~~~~~~~~a~--fSs~Gpt~~~~~~~~~g~~KPDI~APG~~I~Sa~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aAL 644 (718)
... ||++|+... .++++|||.+|+++... ....|..++|||||||+|||++||
T Consensus 191 -------~~~~~~s~~~~~~~----------~~~~~apG~~i~~~~~~--------~~~~~~~~~GTS~Aap~vaG~~Al 245 (267)
T cd04848 191 -------IASYSYSNRCGVAA----------NWCLAAPGENIYSTDPD--------GGNGYGRVSGTSFAAPHVSGAAAL 245 (267)
T ss_pred -------cccccccccchhhh----------hheeecCcCceeecccC--------CCCcccccceeEchHHHHHHHHHH
Confidence 122 477776542 33799999999998732 145788999999999999999999
Q ss_pred HHHhCCCCCHHHHHHHHHhccc
Q 005034 645 IKQKFPSFSPSAIASALSTSAT 666 (718)
Q Consensus 645 l~q~~p~ls~~~ik~~L~~TA~ 666 (718)
|+|++|+++++|||++|++||+
T Consensus 246 ~~~~~p~l~~~~v~~~l~~tA~ 267 (267)
T cd04848 246 LAQKFPWLTADQVRQTLLTTAT 267 (267)
T ss_pred HHHHCCCCCHHHHHHHHHhhcC
Confidence 9999999999999999999995
No 37
>KOG4266 consensus Subtilisin kexin isozyme-1/site 1 protease, subtilase superfamily [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=3.8e-35 Score=308.50 Aligned_cols=266 Identities=23% Similarity=0.346 Sum_probs=208.0
Q ss_pred CCCCCCCCCcEEEEEccccCCCCCCCcCCCCCCCCCCCCCCCccccccCCCCCCCCCceeeeeeecchhhhhcCccCCCC
Q 005034 180 GGYETAGEGVVIGFIDTGIDPTHPSFADDASEHSYPVPSHFSGICEVTRDFPSGSCNRKLIGARHFAASAITRGIFNSSQ 259 (718)
Q Consensus 180 ~~~~~~G~gv~VaVIDtGid~~Hp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~ 259 (718)
+..|+||++|+|||.|||+.-+||-|+.-- ....|. ++
T Consensus 194 Wk~GyTGa~VkvAiFDTGl~~~HPHFrnvK------ERTNWT-------------------------NE----------- 231 (1033)
T KOG4266|consen 194 WKKGYTGAKVKVAIFDTGLRADHPHFRNVK------ERTNWT-------------------------NE----------- 231 (1033)
T ss_pred HhccccCCceEEEEeecccccCCccccchh------hhcCCc-------------------------Cc-----------
Confidence 345999999999999999999999998521 111221 11
Q ss_pred CCCCCCCCCCCccccccccccCCCCCccccccccCccccccCCceEEEEeecccCCCCCHHHHHHHHHHHHHCCCCEEEE
Q 005034 260 DYASPFDGDGHGSHTASVAAGNHGIPVVVTGHHFGNASGMAPRSHIAVYKALYKSFGGFAADVVAAIDQAAQDGVDIISL 339 (718)
Q Consensus 260 ~~~~~~d~~gHGThVAGiiag~~~~~~~~~g~~~~~~~GvAp~A~i~~~kv~~~~~~~~~~~i~~ai~~a~~~g~~ViN~ 339 (718)
..-.|..||||.|||+|||.. ...|.||+++|++.|||.+..-.+.+.+++|++||+....+|+|+
T Consensus 232 --~tLdD~lgHGTFVAGvia~~~------------ec~gfa~d~e~~~frvft~~qVSYTSWFLDAFNYAI~~kidvLNL 297 (1033)
T KOG4266|consen 232 --DTLDDNLGHGTFVAGVIAGRN------------ECLGFASDTEIYAFRVFTDAQVSYTSWFLDAFNYAIATKIDVLNL 297 (1033)
T ss_pred --cccccCcccceeEeeeeccch------------hhcccCCccceeEEEeeccceeehhhHHHHHHHHHHhhhcceEee
Confidence 233478899999999999984 357999999999999999866689999999999999999999999
Q ss_pred cCCCCCCCCCCCccccHHHHHHHHHHHCCCEEEEecCCCCCCCCCCCC--CCCceEEEeeeccCCceeeeEEeCCCceEe
Q 005034 340 SITPNRRPPGIATFFNPIDMALLSAAKAGIFVVQAAGNTGPSPKSMSS--FSPWIFTVGAASHDRIYTNSIILGNSLTIS 417 (718)
Q Consensus 340 S~G~~~~~~~~~~~~~~~~~a~~~a~~~GilvV~AAGN~g~~~~~~~~--~~~~vitVgA~~~~~~~~~~~~~~~~~~~~ 417 (718)
|.|++. +...++-+-+-.....+|++|.|+||+|+-..+..+ .-..||.||..
T Consensus 298 SIGGPD------fmD~PFVeKVwEltAnNvIMvSAiGNDGPLYGTLNNPaDQsDViGVGGI------------------- 352 (1033)
T KOG4266|consen 298 SIGGPD------FMDLPFVEKVWELTANNVIMVSAIGNDGPLYGTLNNPADQSDVIGVGGI------------------- 352 (1033)
T ss_pred ccCCcc------cccchHHHHHHhhccCcEEEEEecCCCCcceeecCCcccccceeeeccc-------------------
Confidence 999863 334455555556788999999999999986544432 23345555542
Q ss_pred eeccCCCCCceEEEEEcccccCCCCcccCCccccccCCCCCCccCCcCceEEEEEeecccccCcchHHHHHHHHHhCCCc
Q 005034 418 GVGLAPGTDKMYTLISALHALNNNTTTTDDMYVGECQDSSNFNQDLVQGNLLICSYSIRFVLGLSTIKQAFETAKNLSAA 497 (718)
Q Consensus 418 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~g~i~~~~~~~~~~~~~~~~~~~~~~~~~~ga~ 497 (718)
T Consensus 353 -------------------------------------------------------------------------------- 352 (1033)
T KOG4266|consen 353 -------------------------------------------------------------------------------- 352 (1033)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred EEEEEeCCCccCcccCCCCCCCCeEEecCcchHHHHHHHHhccCCCccccceeeeeceeEEEecccccccCCCCCceecc
Q 005034 498 GIVFYMDPFVIGFQLNPTPMKMPGIIIPSPDDSKILLQYYNSSLERDEVTKKIIKFGAVACILGGLKANFSNSAPKIMYY 577 (718)
Q Consensus 498 ~vi~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~f 577 (718)
.-.+.++.|
T Consensus 353 -----------------------------------------------------------------------dfdD~IA~F 361 (1033)
T KOG4266|consen 353 -----------------------------------------------------------------------DFDDHIASF 361 (1033)
T ss_pred -----------------------------------------------------------------------cccchhhhh
Confidence 223568999
Q ss_pred ccCCCCCCCCCCCCCCCCCCceeccCCceeecccCCCCCCccccCccccccCchhhhhHHHHHHHHHHHH----hCCCCC
Q 005034 578 SARGPDPEDSFLDDADIMKPNLVAPGNSIWAAWSSLGTDSVEFQGESFAMMSGTSMAAPHIAGLAALIKQ----KFPSFS 653 (718)
Q Consensus 578 Ss~Gpt~~~~~~~~~g~~KPDI~APG~~I~Sa~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~q----~~p~ls 653 (718)
||||-+.-. -.-.=||+||||++-|.+|.... -..+...+||||.|+|.|||+++||.+ +.--++
T Consensus 362 SSRGMtTWE-LP~GYGRmkpDiVtYG~~v~GS~----------v~~GCr~LSGTSVaSPVVAGav~LLvS~~~qk~dl~N 430 (1033)
T KOG4266|consen 362 SSRGMTTWE-LPHGYGRMKPDIVTYGRDVMGSK----------VSTGCRSLSGTSVASPVVAGAVCLLVSVEAQKKDLLN 430 (1033)
T ss_pred ccCCcceee-cCCcccccCCceEeeccccccCc----------ccccchhccCCcccchhhhceeeeEeeeheehhhccC
Confidence 999986421 11223799999999999998876 344778999999999999999999966 333478
Q ss_pred HHHHHHHHHhcccccccCCCccccccccCCCCCCCCCCCCCccccccccccccCC
Q 005034 654 PSAIASALSTSATLYDKNGGPIMAQRAYAKPDENQSPATPFDMGSGFVNATASLD 708 (718)
Q Consensus 654 ~~~ik~~L~~TA~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~G~vn~~~Al~ 708 (718)
|+-+|++|+.+|.+++..+ -++||+|++|+.++.+
T Consensus 431 PASmKQaLiegA~kLpg~N--------------------MfEQGaGkldLL~syq 465 (1033)
T KOG4266|consen 431 PASMKQALIEGAAKLPGPN--------------------MFEQGAGKLDLLESYQ 465 (1033)
T ss_pred HHHHHHHHHhHHhhCCCCc--------------------hhhccCcchhHHHHHH
Confidence 9999999999999987543 3689999999988865
No 38
>cd07488 Peptidases_S8_2 Peptidase S8 family domain, uncharacterized subfamily 2. This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values.
Probab=100.00 E-value=1.6e-33 Score=286.63 Aligned_cols=119 Identities=18% Similarity=0.145 Sum_probs=86.0
Q ss_pred CCCCCCCccccccccccCCCCCccccccccCccccccCCceEEEEeecccCCCCCHHHHHHHHHHH--HHCCCCEEEEcC
Q 005034 264 PFDGDGHGSHTASVAAGNHGIPVVVTGHHFGNASGMAPRSHIAVYKALYKSFGGFAADVVAAIDQA--AQDGVDIISLSI 341 (718)
Q Consensus 264 ~~d~~gHGThVAGiiag~~~~~~~~~g~~~~~~~GvAp~A~i~~~kv~~~~~~~~~~~i~~ai~~a--~~~g~~ViN~S~ 341 (718)
..|.++|||||||||+|.. |++|+++|+..++... ..+.+.++++|+ .+.+++||||||
T Consensus 33 ~~~~~~HGThVAgiiag~~---------------~~~p~a~~~~~~~~~~----~~~~~~~~i~~~~~~~~gv~VINmS~ 93 (247)
T cd07488 33 NNTFDDHATLVASIMGGRD---------------GGLPAVNLYSSAFGIK----SNNGQWQECLEAQQNGNNVKIINHSY 93 (247)
T ss_pred CCCCCCHHHHHHHHHHhcc---------------CCCCccceehhhhCCC----CCCccHHHHHHHHHhcCCceEEEeCC
Confidence 3478999999999999873 6679999987555322 223355677777 567999999999
Q ss_pred CCCCCCCCC--CccccHHHHHHHHHHHC-CCEEEEecCCCCCCC-----CCCCCCCCceEEEeeeccC
Q 005034 342 TPNRRPPGI--ATFFNPIDMALLSAAKA-GIFVVQAAGNTGPSP-----KSMSSFSPWIFTVGAASHD 401 (718)
Q Consensus 342 G~~~~~~~~--~~~~~~~~~a~~~a~~~-GilvV~AAGN~g~~~-----~~~~~~~~~vitVgA~~~~ 401 (718)
|........ ..-...+..+++.+.++ |+++|+||||+|... ...|+..+++|+|||++..
T Consensus 94 G~~~~~~~~~~~~~~~~l~~aid~~a~~~GvlvV~AAGN~g~~~~~~~~i~~pa~~~nvItVGA~d~~ 161 (247)
T cd07488 94 GEGLKRDPRAVLYGYALLSLYLDWLSRNYEVINVFSAGNQGKEKEKFGGISIPTLAYNSIVVGSTDRN 161 (247)
T ss_pred ccCCCCCccccccccchHHHHHHHHHhhCCEEEEEecCCCCCCccCCCCcCCccccCCeEEEEEecCC
Confidence 976543200 01124567777776666 999999999999853 2345668899999998654
No 39
>cd00306 Peptidases_S8_S53 Peptidase domain in the S8 and S53 families. Members of the peptidases S8 (subtilisin and kexin) and S53 (sedolisin) family include endopeptidases and exopeptidases. The S8 family has an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. Serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base. The S53 family contains a catalytic triad Glu/Asp/Ser with an additional acidic residue Asp in the oxyanion hole, similar to that of subtilisin. The serine residue here is the nucleophilic equivalent of the serine residue in the S8 family, while glutamic acid has the same role here as the histidine base. However, the aspartic acid residue that acts as an electrophile is quite different. In S53, it follows glutamic acid, while in S8 it precedes histidine. The stability of these enzymes may be enhanced by calcium; some members hav
Probab=100.00 E-value=1.5e-31 Score=272.98 Aligned_cols=124 Identities=35% Similarity=0.521 Sum_probs=103.1
Q ss_pred CCCCCCCCccccccccccCCCCCccccccccCccccccCCceEEEEeecccCCCCCHHHHHHHHHHHH-HCCCCEEEEcC
Q 005034 263 SPFDGDGHGSHTASVAAGNHGIPVVVTGHHFGNASGMAPRSHIAVYKALYKSFGGFAADVVAAIDQAA-QDGVDIISLSI 341 (718)
Q Consensus 263 ~~~d~~gHGThVAGiiag~~~~~~~~~g~~~~~~~GvAp~A~i~~~kv~~~~~~~~~~~i~~ai~~a~-~~g~~ViN~S~ 341 (718)
...+..+||||||++|++..... ...|+||+++|+.+++...........+++++++++ ..+++||||||
T Consensus 39 ~~~~~~~HGt~va~~i~~~~~~~---------~~~g~a~~a~i~~~~~~~~~~~~~~~~~~~ai~~~~~~~~~~iin~S~ 109 (241)
T cd00306 39 DPDDGNGHGTHVAGIIAASANNG---------GGVGVAPGAKLIPVKVLDGDGSGSSSDIAAAIDYAAADQGADVINLSL 109 (241)
T ss_pred CCCCCCCcHHHHHHHHhcCCCCC---------CCEEeCCCCEEEEEEEecCCCCcCHHHHHHHHHHHHhccCCCEEEeCC
Confidence 34467899999999999886432 126999999999999998755577889999999999 89999999999
Q ss_pred CCCCCCCCCCccccHHHHHHHHHHHC-CCEEEEecCCCCCCCC---CCCCCCCceEEEeeecc
Q 005034 342 TPNRRPPGIATFFNPIDMALLSAAKA-GIFVVQAAGNTGPSPK---SMSSFSPWIFTVGAASH 400 (718)
Q Consensus 342 G~~~~~~~~~~~~~~~~~a~~~a~~~-GilvV~AAGN~g~~~~---~~~~~~~~vitVgA~~~ 400 (718)
|..... ....+.+++..+.++ |++||+||||.+.... ..|+..+++|+||+++.
T Consensus 110 g~~~~~-----~~~~~~~~~~~~~~~~~~i~V~aaGN~~~~~~~~~~~p~~~~~vi~Vga~~~ 167 (241)
T cd00306 110 GGPGSP-----PSSALSEAIDYALAKLGVLVVAAAGNDGPDGGTNIGYPAASPNVIAVGAVDR 167 (241)
T ss_pred CCCCCC-----CCHHHHHHHHHHHHhcCeEEEEecCCCCCCCCCCccCCccCCceEEEEecCc
Confidence 986432 235677777788887 9999999999998876 57888999999999754
No 40
>KOG1114 consensus Tripeptidyl peptidase II [Posttranslational modification, protein turnover, chaperones]
Probab=99.98 E-value=2.1e-32 Score=299.93 Aligned_cols=241 Identities=24% Similarity=0.366 Sum_probs=184.7
Q ss_pred CCCCCccccccccccCCCCCccccccccCccccccCCceEEEEeecccCCC--CCHHHHHHHHHHHHHCCCCEEEEcCCC
Q 005034 266 DGDGHGSHTASVAAGNHGIPVVVTGHHFGNASGMAPRSHIAVYKALYKSFG--GFAADVVAAIDQAAQDGVDIISLSITP 343 (718)
Q Consensus 266 d~~gHGThVAGiiag~~~~~~~~~g~~~~~~~GvAp~A~i~~~kv~~~~~~--~~~~~i~~ai~~a~~~g~~ViN~S~G~ 343 (718)
+...||||||||++|++... ....|+||+|+|+.+++.+...+ -+-..+.+|+..++++.+||||||+|-
T Consensus 308 ~Sg~HGTHVAgIa~anhpe~--------p~~NGvAPgaqIvSl~IGD~RLgsMETgtaltRA~~~v~e~~vDiINmSyGE 379 (1304)
T KOG1114|consen 308 VSGPHGTHVAGIAAANHPET--------PELNGVAPGAQIVSLKIGDGRLGSMETGTALTRAMIEVIEHNVDIINMSYGE 379 (1304)
T ss_pred cCCCCcceehhhhccCCCCC--------ccccCCCCCCEEEEEEecCccccccccchHHHHHHHHHHHhcCCEEEeccCc
Confidence 34579999999999997643 24569999999999999886544 233568999999999999999999998
Q ss_pred CCCCCCCCccccHHHHHHHHHHHCCCEEEEecCCCCCCCCCCCCC---CCceEEEeeeccCCceeeeEEeCCCceEeeec
Q 005034 344 NRRPPGIATFFNPIDMALLSAAKAGIFVVQAAGNTGPSPKSMSSF---SPWIFTVGAASHDRIYTNSIILGNSLTISGVG 420 (718)
Q Consensus 344 ~~~~~~~~~~~~~~~~a~~~a~~~GilvV~AAGN~g~~~~~~~~~---~~~vitVgA~~~~~~~~~~~~~~~~~~~~~~~ 420 (718)
....++. -+.++.+-+...+.|+++|+||||.|+...+++++ ...||.|||.-.......
T Consensus 380 ~a~~pn~---GRviEl~~e~vnKr~vI~VsSAGN~GPaltTVGaPggtTssvIgVGAYVsp~mm~a-------------- 442 (1304)
T KOG1114|consen 380 DAHLPNS---GRVIELLRELVNKRGVIYVSSAGNNGPALTTVGAPGGTTSSVIGVGAYVSPGMMQA-------------- 442 (1304)
T ss_pred cCCCCCc---chHHHHHHHHhhhccEEEEEeCCCCCCceeeccCCCCcccceEeeeeecCHHHHHh--------------
Confidence 7766544 34454444556688999999999999988776654 568999998532211100
Q ss_pred cCCCCCceEEEEEcccccCCCCcccCCccccccCCCCCCccCCcCceEEEEEeecccccCcchHHHHHHHHHhCCCcEEE
Q 005034 421 LAPGTDKMYTLISALHALNNNTTTTDDMYVGECQDSSNFNQDLVQGNLLICSYSIRFVLGLSTIKQAFETAKNLSAAGIV 500 (718)
Q Consensus 421 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~g~i~~~~~~~~~~~~~~~~~~~~~~~~~~ga~~vi 500 (718)
.|.
T Consensus 443 -------~y~---------------------------------------------------------------------- 445 (1304)
T KOG1114|consen 443 -------EYS---------------------------------------------------------------------- 445 (1304)
T ss_pred -------hhh----------------------------------------------------------------------
Confidence 000
Q ss_pred EEeCCCccCcccCCCCCCCCeEEecCcchHHHHHHHHhccCCCccccceeeeeceeEEEecccccccCCCCCceeccccC
Q 005034 501 FYMDPFVIGFQLNPTPMKMPGIIIPSPDDSKILLQYYNSSLERDEVTKKIIKFGAVACILGGLKANFSNSAPKIMYYSAR 580 (718)
Q Consensus 501 ~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~fSs~ 580 (718)
........+..+|||
T Consensus 446 -----------------------------------------------------------------~~e~vp~~~YtWsSR 460 (1304)
T KOG1114|consen 446 -----------------------------------------------------------------VREPVPSNPYTWSSR 460 (1304)
T ss_pred -----------------------------------------------------------------hhccCCCCccccccC
Confidence 001112347889999
Q ss_pred CCCCCCCCCCCCCCCCCceeccCCceeecccCCCCCCccccCccccccCchhhhhHHHHHHHHHHHH----hCCCCCHHH
Q 005034 581 GPDPEDSFLDDADIMKPNLVAPGNSIWAAWSSLGTDSVEFQGESFAMMSGTSMAAPHIAGLAALIKQ----KFPSFSPSA 656 (718)
Q Consensus 581 Gpt~~~~~~~~~g~~KPDI~APG~~I~Sa~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~q----~~p~ls~~~ 656 (718)
||+.| |-+--.|+|||+-|.|.-. +.-..-+.|+|||||+|+++|.+|||++ .+-.+||--
T Consensus 461 gP~~D-------G~lGVsi~APggAiAsVP~--------~tlq~~qLMNGTSMsSP~acG~IAllLSgLKa~ni~ytpys 525 (1304)
T KOG1114|consen 461 GPCLD-------GDLGVSISAPGGAIASVPQ--------YTLQNSQLMNGTSMSSPSACGAIALLLSGLKAQNIPYTPYS 525 (1304)
T ss_pred CCCcC-------CCcceEEecCCccccCCch--------hhhhhhhhhCCcccCCccccchHHHHHHHHHhcCCCCcHHH
Confidence 99998 7889999999999977521 1222446799999999999999999965 556799999
Q ss_pred HHHHHHhcccccccCCCccccccccCCCCCCCCCCCCCccccccccccccCC
Q 005034 657 IASALSTSATLYDKNGGPIMAQRAYAKPDENQSPATPFDMGSGFVNATASLD 708 (718)
Q Consensus 657 ik~~L~~TA~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~G~vn~~~Al~ 708 (718)
||.+|++||.+++... .+.+|.|++++.+|.+
T Consensus 526 VrrAlenTa~~l~~id--------------------~faqG~GmlqVdkAyE 557 (1304)
T KOG1114|consen 526 VRRALENTATKLGDID--------------------SFAQGQGMLQVDKAYE 557 (1304)
T ss_pred HHHHHHhcccccCccc--------------------hhccCcceeehhHHHH
Confidence 9999999999986542 4789999999999975
No 41
>COG1404 AprE Subtilisin-like serine proteases [Posttranslational modification, protein turnover, chaperones]
Probab=99.92 E-value=1.4e-23 Score=237.74 Aligned_cols=247 Identities=32% Similarity=0.490 Sum_probs=185.7
Q ss_pred CCCCCCcEEEEEccccCCCCCCCcCCCCCCCCCCCCCCCccccccCCCCCCCCCceeeeeeecchhhhhcCccCCCCCCC
Q 005034 183 ETAGEGVVIGFIDTGIDPTHPSFADDASEHSYPVPSHFSGICEVTRDFPSGSCNRKLIGARHFAASAITRGIFNSSQDYA 262 (718)
Q Consensus 183 ~~~G~gv~VaVIDtGid~~Hp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~ 262 (718)
+++|+||+|+|||+||+..||+|.+..... ++|... ...
T Consensus 138 ~~~g~gv~~~vid~gv~~~~~~~~~~~~~~------------------------------~~~~~~-----------~~~ 176 (508)
T COG1404 138 GLTGKGVTVAVIDTGVDASHPDLAGSAVAG------------------------------GDFVDG-----------DPE 176 (508)
T ss_pred CCCCCCeEEEEeccCCCCCChhhhcccccc------------------------------cccccC-----------CCC
Confidence 689999999999999999999999865400 111110 001
Q ss_pred -CCCCCCCCccccccccccCCCCCccccccccCccccccCCceEEEEeecccC-CCCCHHHHHHHHHHHHHCC--CCEEE
Q 005034 263 -SPFDGDGHGSHTASVAAGNHGIPVVVTGHHFGNASGMAPRSHIAVYKALYKS-FGGFAADVVAAIDQAAQDG--VDIIS 338 (718)
Q Consensus 263 -~~~d~~gHGThVAGiiag~~~~~~~~~g~~~~~~~GvAp~A~i~~~kv~~~~-~~~~~~~i~~ai~~a~~~g--~~ViN 338 (718)
...|..+|||||+|++++.... +.....|++|+++++.++++... +.+...+++++|+++++.+ +++||
T Consensus 177 ~~~~d~~~hGt~vag~ia~~~~~-------~~~~~~g~a~~~~~~~~~~~~~~~g~~~~~~~~~~i~~~~~~~~~~~~in 249 (508)
T COG1404 177 PPFLDDNGHGTHVAGTIAAVIFD-------NGAGVAGVAPGAKLLLVKVLGSGGGSGELSDVAEGIEGAANLGGPADVIN 249 (508)
T ss_pred CCCCCCCCCcceeeeeeeeeccc-------CCCccccccCCCcEEEEEeccCCCCcccHHHHHHHHHHHHhcCCCCcEEE
Confidence 2468889999999999984211 01246799999999999999875 5578888999999999999 99999
Q ss_pred EcCCCCCCCCCCCccccHHHHHHHHHHHCC-CEEEEecCCCCCCCC----CCCCCCC--ceEEEeeeccCCceeeeEEeC
Q 005034 339 LSITPNRRPPGIATFFNPIDMALLSAAKAG-IFVVQAAGNTGPSPK----SMSSFSP--WIFTVGAASHDRIYTNSIILG 411 (718)
Q Consensus 339 ~S~G~~~~~~~~~~~~~~~~~a~~~a~~~G-ilvV~AAGN~g~~~~----~~~~~~~--~vitVgA~~~~~~~~~~~~~~ 411 (718)
||+|.. .. ......+..++..+...| +++|+++||.+.+.. .+|...+ .+++||+.+.
T Consensus 250 ~s~g~~-~~---~~~~~~~~~a~~~~~~~g~v~~v~aagn~~~~~~~~~~~~p~~~~~~~~i~v~a~~~----------- 314 (508)
T COG1404 250 LSLGGS-LS---DSASPALGDALAAAANAGGVVIVAAAGNDGSNASGGDLAYPASYPAPNVIAVGALDL----------- 314 (508)
T ss_pred ecCCCC-cc---ccccHHHHHHHHHHHHcCCEEEEEecccCCCCCccccccCCcccCCCceEEEecCCC-----------
Confidence 999985 11 223467788888888877 999999999998652 2333333 6666666421
Q ss_pred CCceEeeeccCCCCCceEEEEEcccccCCCCcccCCccccccCCCCCCccCCcCceEEEEEeecccccCcchHHHHHHHH
Q 005034 412 NSLTISGVGLAPGTDKMYTLISALHALNNNTTTTDDMYVGECQDSSNFNQDLVQGNLLICSYSIRFVLGLSTIKQAFETA 491 (718)
Q Consensus 412 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~g~i~~~~~~~~~~~~~~~~~~~~~~~ 491 (718)
T Consensus 315 -------------------------------------------------------------------------------- 314 (508)
T COG1404 315 -------------------------------------------------------------------------------- 314 (508)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HhCCCcEEEEEeCCCccCcccCCCCCCCCeEEecCcchHHHHHHHHhccCCCccccceeeeeceeEEEecccccccCCCC
Q 005034 492 KNLSAAGIVFYMDPFVIGFQLNPTPMKMPGIIIPSPDDSKILLQYYNSSLERDEVTKKIIKFGAVACILGGLKANFSNSA 571 (718)
Q Consensus 492 ~~~ga~~vi~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 571 (718)
.
T Consensus 315 -------------------------------------------------------------------------------~ 315 (508)
T COG1404 315 -------------------------------------------------------------------------------S 315 (508)
T ss_pred -------------------------------------------------------------------------------C
Confidence 1
Q ss_pred CceeccccCCCCCCCCCCCCCCCCCCceeccCCceeecccCCCCCCccccCcc--ccccCchhhhhHHHHHHHHHHHHhC
Q 005034 572 PKIMYYSARGPDPEDSFLDDADIMKPNLVAPGNSIWAAWSSLGTDSVEFQGES--FAMMSGTSMAAPHIAGLAALIKQKF 649 (718)
Q Consensus 572 ~~~a~fSs~Gpt~~~~~~~~~g~~KPDI~APG~~I~Sa~~~~~~~~~~~~~~~--y~~~sGTSmAaP~VAG~aALl~q~~ 649 (718)
+....||++|+... .+++|||.+|.+.. . .....+.. |..++||||++|||+|++||+++.+
T Consensus 316 ~~~~~~s~~g~~~~-----------~~~~apg~~i~~~~-~----~~~~~~~~~~~~~~~Gts~a~p~v~g~aal~~~~~ 379 (508)
T COG1404 316 DTVASFSNDGSPTG-----------VDIAAPGVNILSLS-A----VNTLPGDGADYVTLSGTSMAAPHVSGVAALVLSAN 379 (508)
T ss_pred CccccccccCCCCC-----------cceeCCCccccccc-c----ceeeeCCccceEeeccccccccHHHHHHHHHHccC
Confidence 23577889887421 19999999999832 0 00013444 9999999999999999999999999
Q ss_pred C-CCCHHHHHHHHHhcccc
Q 005034 650 P-SFSPSAIASALSTSATL 667 (718)
Q Consensus 650 p-~ls~~~ik~~L~~TA~~ 667 (718)
| .+++.+++..+..++..
T Consensus 380 ~~~~~~~~~~~~~~~~~~~ 398 (508)
T COG1404 380 PNELTPAQVRNLIVTTAGL 398 (508)
T ss_pred cccCCHHHHHHHHhhcccc
Confidence 9 89999999999888873
No 42
>KOG3526 consensus Subtilisin-like proprotein convertase [Posttranslational modification, protein turnover, chaperones]
Probab=99.88 E-value=1.6e-22 Score=202.91 Aligned_cols=157 Identities=22% Similarity=0.332 Sum_probs=103.3
Q ss_pred cccccCCCCCCCCCcEEEEEccccCCCCCCCcCCCCCCCCCCCCCCCccccccCCCCCCCCCceeeeeeecchhhhhcCc
Q 005034 175 AWIQEGGYETAGEGVVIGFIDTGIDPTHPSFADDASEHSYPVPSHFSGICEVTRDFPSGSCNRKLIGARHFAASAITRGI 254 (718)
Q Consensus 175 ~w~~~~~~~~~G~gv~VaVIDtGid~~Hp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~ 254 (718)
+|.. |++||+|++||+|.||||-||||+.+.- .. .+++|...
T Consensus 153 awa~----g~tgknvttaimddgvdymhpdlk~nyn-----ae-----------------------asydfssn------ 194 (629)
T KOG3526|consen 153 AWAL----GYTGKNVTTAIMDDGVDYMHPDLKSNYN-----AE-----------------------ASYDFSSN------ 194 (629)
T ss_pred HHhh----cccCCCceEEeecCCchhcCcchhcccC-----ce-----------------------eecccccC------
Confidence 6776 8999999999999999999999996532 11 12222221
Q ss_pred cCCCCCCCCCCC--CCCCccccccccccCCCCCccccccccCccccccCCceEEEEeecccCCCCCHHHHHHHHHHHHH-
Q 005034 255 FNSSQDYASPFD--GDGHGSHTASVAAGNHGIPVVVTGHHFGNASGMAPRSHIAVYKALYKSFGGFAADVVAAIDQAAQ- 331 (718)
Q Consensus 255 ~~~~~~~~~~~d--~~gHGThVAGiiag~~~~~~~~~g~~~~~~~GvAp~A~i~~~kv~~~~~~~~~~~i~~ai~~a~~- 331 (718)
...+++.-.| .+.|||.|||-+++..+++++ | .|||.+.++..+|+++. .+..|+++|-...-+
T Consensus 195 --dpfpyprytddwfnshgtrcagev~aardngic--g------vgvaydskvagirmldq---pymtdlieansmghep 261 (629)
T KOG3526|consen 195 --DPFPYPRYTDDWFNSHGTRCAGEVVAARDNGIC--G------VGVAYDSKVAGIRMLDQ---PYMTDLIEANSMGHEP 261 (629)
T ss_pred --CCCCCCcccchhhhccCccccceeeeeccCCce--e------eeeeeccccceeeecCC---chhhhhhhhcccCCCC
Confidence 1111111112 368999999998887766654 2 59999999999999987 677788776443322
Q ss_pred CCCCEEEEcCCCCCCCCCCCccccHHHHHHHHHHH-----CCCEEEEecCCCCCCC
Q 005034 332 DGVDIISLSITPNRRPPGIATFFNPIDMALLSAAK-----AGIFVVQAAGNTGPSP 382 (718)
Q Consensus 332 ~g~~ViN~S~G~~~~~~~~~~~~~~~~~a~~~a~~-----~GilvV~AAGN~g~~~ 382 (718)
..++|.+.|||.......-+.-....-+|+-.-++ .|-++|.|+|..|.+.
T Consensus 262 ~kihiysaswgptddgktvdgprnatmraiv~gvnegrnglgsiyvwasgdgge~d 317 (629)
T KOG3526|consen 262 SKIHIYSASWGPTDDGKTVDGPRNATMRAIVRGVNEGRNGLGSIYVWASGDGGEDD 317 (629)
T ss_pred ceEEEEecccCcCCCCcccCCchhHHHHHHHHhhhcccCCcccEEEEecCCCCCcc
Confidence 35889999999654321111122233333333333 5679999999988753
No 43
>cd04056 Peptidases_S53 Peptidase domain in the S53 family. Members of the peptidases S53 (sedolisin) family include endopeptidases and exopeptidases sedolisin, kumamolysin, and (PSCP) Pepstatin-insensitive Carboxyl Proteinase. The S53 family contains a catalytic triad Glu/Asp/Ser with an additional acidic residue Asp in the oxyanion hole, similar to that of Asn in subtilisin. The stability of these enzymes may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. Characterized sedolisins include Kumamolisin, an extracellular calcium-dependent thermostable endopeptidase from Bacillus. The enzyme is synthesized with a 188 amino acid N-terminal preprotein region which is cleaved after the extraction into the extracellular space with low pH. One kumamolysin paralog, kumamolisin-
Probab=99.75 E-value=1.4e-17 Score=179.93 Aligned_cols=103 Identities=24% Similarity=0.294 Sum_probs=83.2
Q ss_pred ccccccCCceEEEEeecccCCCCCHHHHHHHHHHHHHC---CCCEEEEcCCCCCCCCCCCccccHHHHHHHHHHHCCCEE
Q 005034 295 NASGMAPRSHIAVYKALYKSFGGFAADVVAAIDQAAQD---GVDIISLSITPNRRPPGIATFFNPIDMALLSAAKAGIFV 371 (718)
Q Consensus 295 ~~~GvAp~A~i~~~kv~~~~~~~~~~~i~~ai~~a~~~---g~~ViN~S~G~~~~~~~~~~~~~~~~~a~~~a~~~Gilv 371 (718)
...||||+|+|+.+++.+.. ..+++.++.+++.+ +++|||+|||....... ..+.+.++++++.+..+||+|
T Consensus 82 ~~~gvAP~a~i~~~~~~~~~----~~~~~~a~~~ai~~~~~~~~VIS~S~G~~e~~~~-~~~~~~~~~~~~~a~~~Gitv 156 (361)
T cd04056 82 YAGAIAPGANITLYFAPGTV----TNGPLLAFLAAVLDNPNLPSVISISYGEPEQSLP-PAYAQRVCNLFAQAAAQGITV 156 (361)
T ss_pred HHHhccCCCeEEEEEECCcC----ccHHHHHHHHHHHcCCCCCCEEEccCCccccccC-HHHHHHHHHHHHHHHhCCeEE
Confidence 46799999999999998752 34577888888877 99999999998653211 234578889999999999999
Q ss_pred EEecCCCCCCCC-----------CCCCCCCceEEEeeeccCC
Q 005034 372 VQAAGNTGPSPK-----------SMSSFSPWIFTVGAASHDR 402 (718)
Q Consensus 372 V~AAGN~g~~~~-----------~~~~~~~~vitVgA~~~~~ 402 (718)
|+||||+|.... .+|+.+|+|++||+++...
T Consensus 157 vaAsGd~G~~~~~~~~~~~~~~~~~Pas~P~V~sVGgt~~~~ 198 (361)
T cd04056 157 LAASGDSGAGGCGGDGSGTGFSVSFPASSPYVTAVGGTTLYT 198 (361)
T ss_pred EEeCCCCCCCCCCCCCCCCcccCCCCCCCCceeeeecccccC
Confidence 999999998653 3678899999999987553
No 44
>PF05922 Inhibitor_I9: Peptidase inhibitor I9; InterPro: IPR010259 Peptide proteinase inhibitors can be found as single domain proteins or as single or multiple domains within proteins; these are referred to as either simple or compound inhibitors, respectively. In many cases they are synthesised as part of a larger precursor protein, either as a prepropeptide or as an N-terminal domain associated with an inactive peptidase or zymogen. This domain prevents access of the substrate to the active site. Removal of the N-terminal inhibitor domain either by interaction with a second peptidase or by autocatalytic cleavage activates the zymogen. Other inhibitors interact direct with proteinases using a simple noncovalent lock and key mechanism; while yet others use a conformational change-based trapping mechanism that depends on their structural and thermodynamic properties. Limited proteolysis of most large protein precursors is carried out in vivo by the subtilisin-like pro-protein convertases. Many important biological processes such as peptide hormone synthesis, viral protein processing and receptor maturation involve proteolytic processing by these enzymes []. The subtilisin-serine protease (SRSP) family hormone and pro-protein convertases (furin, PC1/3, PC2, PC4, PACE4, PC5/6, and PC7/7/LPC) act within the secretory pathway to cleave polypeptide precursors at specific basic sites, generating their biologically active forms. Serum proteins, pro-hormones, receptors, zymogens, viral surface glycoproteins, bacterial toxins, amongst others, are activated by this route []. The SRSPs share the same domain structure, including a signal peptide, the pro-peptide, the catalytic domain, the P/middle or homo B domain, and the C terminus. Proteinase propeptide inhibitors (sometimes refered to as activation peptides) are responsible for the modulation of folding and activity of the pro-enzyme or zymogen. The pro-segment docks into the enzyme moiety shielding the substrate binding site, thereby promoting inhibition of the enzyme. Several such propeptides share a similar topology [], despite often low sequence identities []. The propeptide region has an open-sandwich antiparallel-alpha/antiparallel-beta fold, with two alpha-helices and four beta-strands with a (beta/alpha/beta)x2 topology. This group of sequences contain the propeptide domain at the N terminus of peptidases belonging to MEROPS family S8A, subtilisins. A number of the members of this group of sequences belong to MEROPS inhibitor family I9, clan I-. The propeptide is removed by proteolytic cleavage; removal activating the enzyme.; GO: 0004252 serine-type endopeptidase activity, 0042802 identical protein binding, 0043086 negative regulation of catalytic activity; PDB: 3CNQ_P 1SPB_P 3CO0_P 1ITP_A 1V5I_B 1SCJ_B 3P5B_P 2XTJ_P 2W2M_P 2P4E_P ....
Probab=98.55 E-value=4.7e-07 Score=75.94 Aligned_cols=46 Identities=33% Similarity=0.400 Sum_probs=41.0
Q ss_pred CCCceEEEEecceeeeEEEEeCHHHHHHHhcCCCeEEEEeCceecc
Q 005034 115 GEKYLKLYSYHYLINGFSVFVTPQQAEKLSRRREVANVVSDFSVRT 160 (718)
Q Consensus 115 ~~~~~~~~~~~~~~ng~~v~~~~~~~~~L~~~p~V~~v~~~~~~~~ 160 (718)
....++.+.|...+|||+++++++++++|+++|+|++|+||..+++
T Consensus 36 ~~~~~~~~~y~~~~~Gfs~~l~~~~i~~L~~~p~V~~Ve~D~~v~l 81 (82)
T PF05922_consen 36 SINAKVLYSYDNAFNGFSAKLSEEEIEKLRKDPGVKSVEPDQVVSL 81 (82)
T ss_dssp TTT-EEEEEESSTSSEEEEEE-HHHHHHHHTSTTEEEEEEECEEEE
T ss_pred ccCCceEEEEeeeEEEEEEEeCHHHHHHHHcCCCeEEEEeCceEec
Confidence 4578999999989999999999999999999999999999998875
No 45
>COG4934 Predicted protease [Posttranslational modification, protein turnover, chaperones]
Probab=98.51 E-value=1.2e-06 Score=102.93 Aligned_cols=99 Identities=21% Similarity=0.305 Sum_probs=64.0
Q ss_pred ccccccCCceEEEEeecccCCCCCHHHHHHHHHHHHHCCC-CEEEEcCCCCCCC-CCCCccccHHHHHHHHHHHCCCEEE
Q 005034 295 NASGMAPRSHIAVYKALYKSFGGFAADVVAAIDQAAQDGV-DIISLSITPNRRP-PGIATFFNPIDMALLSAAKAGIFVV 372 (718)
Q Consensus 295 ~~~GvAp~A~i~~~kv~~~~~~~~~~~i~~ai~~a~~~g~-~ViN~S~G~~~~~-~~~~~~~~~~~~a~~~a~~~GilvV 372 (718)
..+-+||+|+|..+-.-. .....+..++.+....-+ -++-.||+....- .....+.+.++.....+..+||.++
T Consensus 287 ~s~A~AP~A~I~lvvap~----~~~~a~dna~n~~~~~~~s~~ip~S~s~~~~~~~~~~~~~~~~d~l~~qasaeGITi~ 362 (1174)
T COG4934 287 WSHAMAPKANIDLVVAPN----PLVSALDNAYNEVLYYMVSFVIPISWSYAEFQGPISPGYADLMDLLYEQASAEGITIF 362 (1174)
T ss_pred hhhccCccCceEEEEcCC----CceehhhHHHHHHHHhhhcccccchhHHHHhccCCChHHHHHHHHHHHHhhccceEEE
Confidence 345799999999887622 223333334433332211 2333566642211 1112256778888888999999999
Q ss_pred EecCCCCCCCC--------CCCCCCCceEEEee
Q 005034 373 QAAGNTGPSPK--------SMSSFSPWIFTVGA 397 (718)
Q Consensus 373 ~AAGN~g~~~~--------~~~~~~~~vitVgA 397 (718)
+|+|.+|.... .+|+.+|+|.+||.
T Consensus 363 AASGD~Gay~~~~~~~~sv~~PasSPYVtsVGG 395 (1174)
T COG4934 363 AASGDSGAYDDTPTPYLSVNFPASSPYVTSVGG 395 (1174)
T ss_pred EecccccccCCCcccceeecccCCCccEEeecC
Confidence 99999987653 35778999999998
No 46
>KOG3525 consensus Subtilisin-like proprotein convertase [Posttranslational modification, protein turnover, chaperones]
Probab=98.48 E-value=6.3e-07 Score=98.15 Aligned_cols=159 Identities=21% Similarity=0.235 Sum_probs=99.6
Q ss_pred cccccCCCCCCCCCcEEEEEccccCCCCCCCcCCCCCCCCCCCCCCCccccccCCCCCCCCCceeeeeeecchhhhhcCc
Q 005034 175 AWIQEGGYETAGEGVVIGFIDTGIDPTHPSFADDASEHSYPVPSHFSGICEVTRDFPSGSCNRKLIGARHFAASAITRGI 254 (718)
Q Consensus 175 ~w~~~~~~~~~G~gv~VaVIDtGid~~Hp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~ 254 (718)
+|.. +++|+++.|+|+|+|+...||++..... +... +++...
T Consensus 25 ~~~~----~~~g~~~~~~i~ddgl~~~h~~~~~~~~-----~~~s-----------------------~d~~~~------ 66 (431)
T KOG3525|consen 25 AWCK----GYTGTRVSVTILDDGLECSHPDLRNNYD-----PLGS-----------------------YDVNRH------ 66 (431)
T ss_pred cccc----CCCCCceEEEEeeccccccCcccccccC-----ccee-----------------------EeeecC------
Confidence 5665 7999999999999999999999997532 2222 222211
Q ss_pred cCCCCCCCCCCCCCCCccccccccccCCCCCccccccccCccccccCCceEEEEeecccCCCCCHHHHHHHHHHHHH-CC
Q 005034 255 FNSSQDYASPFDGDGHGSHTASVAAGNHGIPVVVTGHHFGNASGMAPRSHIAVYKALYKSFGGFAADVVAAIDQAAQ-DG 333 (718)
Q Consensus 255 ~~~~~~~~~~~d~~gHGThVAGiiag~~~~~~~~~g~~~~~~~GvAp~A~i~~~kv~~~~~~~~~~~i~~ai~~a~~-~g 333 (718)
-+......+......|||-|++-++...++... ..|+++++++..++++.. ...+...+...... ..
T Consensus 67 ~~~p~~~~~~~~~~~~g~~Ca~~~a~~~~~~~C--------~vg~~~~~~~~g~~~l~~----~v~~~~~~~~~~~~~~~ 134 (431)
T KOG3525|consen 67 DNDPEPRCDGTNENKHGTRCAGCVAARANNLTC--------GVGVAYNATIGGIRMLAG----CVSDAVEAPSLGFGPCH 134 (431)
T ss_pred CCCcccccCCCCccccCCCCCcccccccCCCcC--------CCCcccCccccceeeeee----ecccceecccccCCCCC
Confidence 011111122224578999999999988643322 359999999999998764 11233333333333 34
Q ss_pred CCEEEEcCCCCCCCCCCCccccHHHHHHHHHH-----HCCCEEEEecCCCCCCCC
Q 005034 334 VDIISLSITPNRRPPGIATFFNPIDMALLSAA-----KAGIFVVQAAGNTGPSPK 383 (718)
Q Consensus 334 ~~ViN~S~G~~~~~~~~~~~~~~~~~a~~~a~-----~~GilvV~AAGN~g~~~~ 383 (718)
++|-..|||......--.........++..+. .+|-++|+|.||.|....
T Consensus 135 ~di~scsw~pddd~~t~~~~~~l~~~~~~~~~~~g~~~~gs~~v~as~ngg~~~d 189 (431)
T KOG3525|consen 135 IDIYSCSWGPDDDGKTCDGPGTLAREALVYGRGCGRHGKGSIFVWASGNGGTCGD 189 (431)
T ss_pred ceeecCcCCcccCCCcCCCCcchhhhhhhccccccccCCCCeeEEEecCcccccc
Confidence 88999999975433111222233444444433 478899999999987543
No 47
>cd02133 PA_C5a_like PA_C5a_like: Protease-associated domain containing proteins like Streptococcus pyogenes C5a peptidase. This group contains various PA domain-containing proteins similar to S. pyogenes C5a, including, i) Vpr, a minor extracellular serine protease from Bacillus subtilis, ii) a large molecular mass collagenolytic protease from Geobacillus collagenovorans MO-1, and iii) PrtS, a cell envelope protease from Streptococcus thermophilus CNRZ 385. Proteins in this group belong to the peptidase S8 family. C5a peptidase is a cell surface serine protease which specifically inactivates C5a [a chemotactic peptide, which attracts polymorphonuclear leukocytes (PMNs)], by cleaving it to release a 7-residue carboxy-terminal fragment which contains the PMN binding site. The significance of the PA domain to these proteins has not been ascertained. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promotin
Probab=98.37 E-value=3.1e-06 Score=79.15 Aligned_cols=103 Identities=21% Similarity=0.306 Sum_probs=71.2
Q ss_pred CCccCCcCceEEEEEeecccccCcchHHHHHHHHHhCCCcEEEEEeCCCccCcccCCCCCCCCeEEecCcchHHHHHHHH
Q 005034 458 NFNQDLVQGNLLICSYSIRFVLGLSTIKQAFETAKNLSAAGIVFYMDPFVIGFQLNPTPMKMPGIIIPSPDDSKILLQYY 537 (718)
Q Consensus 458 ~~~~~~~~g~i~~~~~~~~~~~~~~~~~~~~~~~~~~ga~~vi~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~l~~~~ 537 (718)
.+...+++|||++|.+ +.|.+.++..+++.+||.++|++++..............+|.+++ +..++..|++++
T Consensus 40 d~~~~dv~GkIvL~~r------g~c~~~~K~~~a~~aGA~gvIi~n~~~~~~~~~~~~~~~iP~v~I-s~~dG~~L~~~l 112 (143)
T cd02133 40 DFEGKDVKGKIALIQR------GEITFVEKIANAKAAGAVGVIIYNNVDGLIPGTLGEAVFIPVVFI-SKEDGEALKAAL 112 (143)
T ss_pred ccCCCCccceEEEEEC------CCCCHHHHHHHHHHCCCeEEEEeecCCCcccccCCCCCeEeEEEe-cHHHHHHHHHHH
Confidence 3445678999999987 457899999999999999999999875321111112346788877 778899999998
Q ss_pred hccCCCccccceeeeeceeEEEecccccccCCCCCceeccccCCCCC
Q 005034 538 NSSLERDEVTKKIIKFGAVACILGGLKANFSNSAPKIMYYSARGPDP 584 (718)
Q Consensus 538 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~fSs~Gpt~ 584 (718)
++ .. .+.+..+ .. ....+.++.||||||+.
T Consensus 113 ~~-~~-------~i~~~~~--------~~-~~~~p~va~fSsrgp~g 142 (143)
T cd02133 113 ES-SK-------KLTFNTK--------KE-KATNPDLADFSSRGPWG 142 (143)
T ss_pred hC-CC-------eEEEEec--------cc-cccCCccccccCcCCCC
Confidence 76 11 1222111 11 23345689999999973
No 48
>cd02120 PA_subtilisin_like PA_subtilisin_like: Protease-associated domain containing subtilisin-like proteases. This group contains various PA domain-containing subtilisin-like proteases including melon cucumisin, Arabidopsis thaliana Ara12, a nodule specific serine protease from Alnus glutinosa ag12, members of the tomato P69 family, and tomato LeSBT2. These proteins belong to the peptidase S8 family. Cucumisin from the juice of melon fruits is a thermostable serine peptidase, with a broad substrate specificity for oligopeptides and proteins. A. thaliana Ara12 is a thermostable, extracellular serine protease, found chiefly in silique tissue and stem tissue. Ara12 is stimulated by Ca2+ ions. A. glutinosa ag12 is expressed at high levels in the nodules, and at low levels in the shoot tips; it is implicated in both symbiotic and non-symbiotic processes in plant development. The tomato P69 protease family is comprised of various protein isoforms of approximately 69KDa. These isoforms accu
Probab=98.23 E-value=1.8e-05 Score=72.24 Aligned_cols=117 Identities=24% Similarity=0.378 Sum_probs=85.0
Q ss_pred EEeCCCceEeeeccCCCCCceEEEEEcccccCCCCcccCCccccccCCCCCCccCCcCceEEEEEeecccccCcc-hHHH
Q 005034 408 IILGNSLTISGVGLAPGTDKMYTLISALHALNNNTTTTDDMYVGECQDSSNFNQDLVQGNLLICSYSIRFVLGLS-TIKQ 486 (718)
Q Consensus 408 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~g~i~~~~~~~~~~~~~~-~~~~ 486 (718)
+.++|++++.|+++.......+++++..... .......|.. ..+...+++|||++|.++ .+ .+..
T Consensus 2 i~LGng~~i~G~sl~~~~~~~~~~~~~~~~~-------~~~~~~~C~~-~~~~~~~v~GkIVlc~~~------~~~~~~~ 67 (126)
T cd02120 2 VTLGNGKTIVGQSLYPGNLKTYPLVYKSANS-------GDVDASLCLP-GSLDPSKVKGKIVLCDRG------GNTSRVA 67 (126)
T ss_pred EEeCCCCEEEEEEccCCCCCccceEeccCcC-------CCCccccCCC-CCCChhhccccEEEEeCC------CCccHHH
Confidence 5678999999999986543356776533211 1234577964 335557899999999873 45 7788
Q ss_pred HHHHHHhCCCcEEEEEeCCCccCcccCCCCCCCCeEEecCcchHHHHHHHHhcc
Q 005034 487 AFETAKNLSAAGIVFYMDPFVIGFQLNPTPMKMPGIIIPSPDDSKILLQYYNSS 540 (718)
Q Consensus 487 ~~~~~~~~ga~~vi~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~l~~~~~~~ 540 (718)
+..+++..||.|+|++++........ .....+|.+.+ ...++..|++|+++.
T Consensus 68 k~~~~~~~GA~gvI~~~~~~~~~~~~-~~~~~iP~v~I-~~~~g~~l~~y~~~~ 119 (126)
T cd02120 68 KGDAVKAAGGAGMILANDPTDGLDVV-ADAHVLPAVHV-DYEDGTAILSYINST 119 (126)
T ss_pred HHHHHHHcCCcEEEEEecCCCCceec-ccccccceEEE-CHHHHHHHHHHHHcC
Confidence 89999999999999998876432222 22467999998 669999999999874
No 49
>PF02225 PA: PA domain; InterPro: IPR003137 The PA (Protease associated) domain is found as an insert domain in diverse proteases, which include the MEROPS peptidase families A22B, M28, and S8A []. The PA domain is also found in a plant vacuolar sorting receptor O22925 from SWISSPROT and members of the RZF family, e.g. O43567 from SWISSPROT.; PDB: 3EIF_A 1XF1_B 3BXM_A 2C6P_A 1Z8L_C 3SJF_A 3BHX_A 2C6G_A 3D7F_A 2XEG_A ....
Probab=97.61 E-value=0.00026 Score=61.69 Aligned_cols=75 Identities=25% Similarity=0.499 Sum_probs=57.7
Q ss_pred CCCCccCCcCceEEEEEeecccccCcchHHHHHHHHHhCCCcEEEEEeCCC---ccCcccCCCCCCCCeEEecCcchHHH
Q 005034 456 SSNFNQDLVQGNLLICSYSIRFVLGLSTIKQAFETAKNLSAAGIVFYMDPF---VIGFQLNPTPMKMPGIIIPSPDDSKI 532 (718)
Q Consensus 456 ~~~~~~~~~~g~i~~~~~~~~~~~~~~~~~~~~~~~~~~ga~~vi~~~~~~---~~~~~~~~~~~~~p~~~~~~~~~~~~ 532 (718)
...+...+++|+|++|.+ +.|++.+|..+++++||.|+|+++... ............+|.+++ +..++..
T Consensus 24 ~~~~~~~~~~gkIvlv~r------g~~~~~~k~~~a~~~GA~gvIi~~~~~~~~~~~~~~~~~~~~iP~v~I-~~~~g~~ 96 (101)
T PF02225_consen 24 PSDYNGSDVKGKIVLVER------GSCSFDDKVRNAQKAGAKGVIIYNPPPNNGSMIDSEDPDPIDIPVVFI-SYEDGEA 96 (101)
T ss_dssp HHHTSTSTCTTSEEEEES------TSSCHHHHHHHHHHTTESEEEEE-TSCSCTTTTCEBTTTSTBSEEEEE--HHHHHH
T ss_pred ccccCCccccceEEEEec------CCCCHHHHHHHHHHcCCEEEEEEeCCccccCcccccCCCCcEEEEEEe-CHHHHhh
Confidence 345667789999999987 788999999999999999999999222 122334556778999999 7788888
Q ss_pred HHHHH
Q 005034 533 LLQYY 537 (718)
Q Consensus 533 l~~~~ 537 (718)
|++|+
T Consensus 97 L~~~i 101 (101)
T PF02225_consen 97 LLAYI 101 (101)
T ss_dssp HHHHH
T ss_pred hhccC
Confidence 88764
No 50
>cd02129 PA_hSPPL_like PA_hSPPL_like: Protease-associated domain containing human signal peptide peptidase-like (hSPPL)-like. This group contains various PA domain-containing proteins similar to hSPPL2a and 2b. These SPPLs are GxGD aspartic proteases. SPPL2a is sorted to the late endosomes, SPPL2b to the plasma membrane. In activated dendritic cells, hSPPL2a and 2b catalyze the intramembrane proteolysis of tumor necrosis factor alpha triggering IL-12 production. hSPPL2a and 2b may have a broad substrate spectrum. The significance of the PA domain to these SPPLs has not been ascertained. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate.
Probab=97.59 E-value=0.00044 Score=61.83 Aligned_cols=82 Identities=17% Similarity=0.250 Sum_probs=61.7
Q ss_pred ccccCCCCCCccCCcCceEEEEEeecccccCcchHHHHHHHHHhCCCcEEEEEeCCCcc---CcccCCCCCCCCeEEecC
Q 005034 450 VGECQDSSNFNQDLVQGNLLICSYSIRFVLGLSTIKQAFETAKNLSAAGIVFYMDPFVI---GFQLNPTPMKMPGIIIPS 526 (718)
Q Consensus 450 ~~~c~~~~~~~~~~~~g~i~~~~~~~~~~~~~~~~~~~~~~~~~~ga~~vi~~~~~~~~---~~~~~~~~~~~p~~~~~~ 526 (718)
...|. ...+...+++|+|+++.| |.|+|.+|..+++.+||.++|+||+.... +.........||.++| +
T Consensus 30 ~~gC~-~~~~~~~~l~gkIaLV~R------G~CsF~~K~~~Aq~aGA~aVII~nn~~~~~~~~~~~~~~~v~IP~v~I-s 101 (120)
T cd02129 30 SVLCS-ASDVPPGGLKGKAVVVMR------GNCTFYEKARLAQSLGAEGLLIVSRERLVPPSGNRSEYEKIDIPVALL-S 101 (120)
T ss_pred cCCCC-ccccCccccCCeEEEEEC------CCcCHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCCCcCCcccEEEE-e
Confidence 45676 455556678999999998 78999999999999999999999987631 1111224567898886 6
Q ss_pred cchHHHHHHHHhc
Q 005034 527 PDDSKILLQYYNS 539 (718)
Q Consensus 527 ~~~~~~l~~~~~~ 539 (718)
..++..|++.+..
T Consensus 102 ~~dG~~i~~~l~~ 114 (120)
T cd02129 102 YKDMLDIQQTFGD 114 (120)
T ss_pred HHHHHHHHHHhcc
Confidence 6778888776653
No 51
>cd04816 PA_SaNapH_like PA_SaNapH_like: Protease-associated domain containing proteins like Streptomyces anulatus N-acetylpuromycin N-acetylhydrolase (SaNapH).This group contains various PA domain-containing proteins similar SaNapH. Proteins in this group belong to the peptidase M28 family. NapH is a terminal enzyme in the puromycin biosynthetic pathway; NapH hydrolyzes N-acetylpuromycin to the active antibiotic. The significance of the PA domain to these proteins has not been ascertained. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate.
Probab=97.37 E-value=0.0011 Score=60.05 Aligned_cols=83 Identities=16% Similarity=0.203 Sum_probs=61.6
Q ss_pred ccccCCCCCCccCCcCceEEEEEeecccccCcchHHHHHHHHHhCCCcEEEEEeCCCccC---cccCC-CCCCCCeEEec
Q 005034 450 VGECQDSSNFNQDLVQGNLLICSYSIRFVLGLSTIKQAFETAKNLSAAGIVFYMDPFVIG---FQLNP-TPMKMPGIIIP 525 (718)
Q Consensus 450 ~~~c~~~~~~~~~~~~g~i~~~~~~~~~~~~~~~~~~~~~~~~~~ga~~vi~~~~~~~~~---~~~~~-~~~~~p~~~~~ 525 (718)
.+.|.. ..+...+++|||++|.| +.|.+.+|..+++++||.++|+|++..... ..... ....+|.+++
T Consensus 29 ~~gC~~-~~~~~~~~~GkIvLv~r------g~c~f~~K~~~A~~aGA~avIi~n~~~~~~~~~~~~~~~~~~~iP~~~I- 100 (122)
T cd04816 29 PAGCDA-SDYDGLDVKGAIVLVDR------GGCPFADKQKVAAARGAVAVIVVNNSDGGGTAGTLGAPNIDLKVPVGVI- 100 (122)
T ss_pred ccCCCc-cccCCCCcCCeEEEEEC------CCCCHHHHHHHHHHCCCcEEEEEeCCCCccccccccCCCCCCeeeEEEE-
Confidence 467863 34455678999999998 578899999999999999999999776211 11111 3456888886
Q ss_pred CcchHHHHHHHHhcc
Q 005034 526 SPDDSKILLQYYNSS 540 (718)
Q Consensus 526 ~~~~~~~l~~~~~~~ 540 (718)
+..+++.|++++...
T Consensus 101 s~~~G~~l~~~l~~g 115 (122)
T cd04816 101 TKAAGAALRRRLGAG 115 (122)
T ss_pred cHHHHHHHHHHHcCC
Confidence 568888898888654
No 52
>cd02127 PA_hPAP21_like PA_hPAP21_like: Protease-associated domain containing proteins like the human secreted glycoprotein hPAP21 (human protease-associated domain-containing protein, 21kDa). This group contains various PA domain-containing proteins similar to hPAP21. Complex N-glycosylation may be required for the secretion of hPAP21. The significance of the PA domain to hPAP21 has not been ascertained. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate.
Probab=97.32 E-value=0.0013 Score=59.14 Aligned_cols=82 Identities=10% Similarity=0.176 Sum_probs=60.2
Q ss_pred ccccCCCCCCccCCcCceEEEEEeecccccCcchHHHHHHHHHhCCCcEEEEEeCCCccC--cc-c--C--CCCCCCCeE
Q 005034 450 VGECQDSSNFNQDLVQGNLLICSYSIRFVLGLSTIKQAFETAKNLSAAGIVFYMDPFVIG--FQ-L--N--PTPMKMPGI 522 (718)
Q Consensus 450 ~~~c~~~~~~~~~~~~g~i~~~~~~~~~~~~~~~~~~~~~~~~~~ga~~vi~~~~~~~~~--~~-~--~--~~~~~~p~~ 522 (718)
.+.|..+. +..+++|+|+++.| |.|++.+|..+++++||.++|+|++..... .. . . .....+|.+
T Consensus 21 ~~gC~~~~--~~~~~~g~I~Lv~R------G~C~F~~K~~~Aq~aGA~avII~n~~~~~~~~~~~m~~~~~~~~i~IP~v 92 (118)
T cd02127 21 LEACEELR--NIHDINGNIALIER------GGCSFLTKAINAQKAGALAVIITDVNNDSDEYYVEMIQDDSSRRADIPAA 92 (118)
T ss_pred cccCCCCC--CccccCCeEEEEEC------CCCCHHHHHHHHHHCCCcEEEEEECCCCccccceEecCCCCCCCceEEEE
Confidence 46788533 24568999999998 789999999999999999999999765321 11 1 1 234568888
Q ss_pred EecCcchHHHHHHHHhcc
Q 005034 523 IIPSPDDSKILLQYYNSS 540 (718)
Q Consensus 523 ~~~~~~~~~~l~~~~~~~ 540 (718)
++ +..++..|++.+...
T Consensus 93 ~I-s~~dG~~L~~~l~~g 109 (118)
T cd02127 93 FL-LGKNGYMIRKTLERL 109 (118)
T ss_pred Ee-cHHHHHHHHHHHHcC
Confidence 87 567777787776643
No 53
>cd04817 PA_VapT_like PA_VapT_like: Protease-associated domain containing proteins like VapT from Vibrio metschnikovii strain RH530. This group contains various PA domain-containing proteins similar to V. metschnikovii VapT, including the serine alkaline protease SapSh from the psychotroph Shewanella strain Ac10 and the Apa1 protease from the psychrotroph Pseudoalteromonas Sp. As-11. VapT is a sodium dodecyl sulfate (SDS) resistant extracellular alkaline serine protease showing high activity over a broad pH range and temperature. SapSh has a high level of protease activity at low temperatures. Apa1 is also cold-adapted. The significance of the PA domain to these proteins has not been ascertained. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate.
Probab=97.22 E-value=0.0013 Score=60.65 Aligned_cols=74 Identities=14% Similarity=0.280 Sum_probs=56.3
Q ss_pred CccCCcCceEEEEEeecccccCcch-----HHHHHHHHHhCCCcEEEEEeCCCccCc----ccCCC-CCCCCeEEecCcc
Q 005034 459 FNQDLVQGNLLICSYSIRFVLGLST-----IKQAFETAKNLSAAGIVFYMDPFVIGF----QLNPT-PMKMPGIIIPSPD 528 (718)
Q Consensus 459 ~~~~~~~g~i~~~~~~~~~~~~~~~-----~~~~~~~~~~~ga~~vi~~~~~~~~~~----~~~~~-~~~~p~~~~~~~~ 528 (718)
+.+.+++|||+|+.| +.|. |.+|+.+|+++||.++|+||+....+. ..... ...+|.+++ +..
T Consensus 50 ~~~~d~~GkIaLI~R------G~c~~~~~~f~~Kv~~A~~aGA~avIIyNn~~~~g~~~~~lg~~~~~~~IP~v~i-s~~ 122 (139)
T cd04817 50 YICGGMAGKICLIER------GGNSKSVYPEIDKVKACQNAGAIAAIVYSNAALAGLQNPFLVDTNNDTTIPSVSV-DRA 122 (139)
T ss_pred ccCCCcCccEEEEEC------CCCCCCcccHHHHHHHHHHCCCeEEEEEeCCCCCCcccccccCCCCCceEeEEEe-eHH
Confidence 445678999999999 5677 999999999999999999999843221 11222 467898887 667
Q ss_pred hHHHHHHHHhc
Q 005034 529 DSKILLQYYNS 539 (718)
Q Consensus 529 ~~~~l~~~~~~ 539 (718)
++..|...+..
T Consensus 123 dG~~L~~~l~~ 133 (139)
T cd04817 123 DGQALLAALGQ 133 (139)
T ss_pred HHHHHHHHhcC
Confidence 88888876643
No 54
>cd02122 PA_GRAIL_like PA _GRAIL_like: Protease-associated (PA) domain GRAIL-like. This group includes PA domain containing E3 (ubiquitin ligases) similar to human GRAIL (gene related to anergy in lymphocytes) protein. Proteins in this group contain a C3H2C3 RING finger. E3 ubiquitin ligase is part of an enzymic cascade, the end result of which is the ubiquitination of proteins. In this cascade, E1 activates the ubiquitin, the activated ubiquitin is carried by E2, and E3 recognizes the acceptor protein as well as catalyzes the transfer of the activated ubiquitin from E2 to this acceptor. GRAIL, a transmembrane protein localized in the endosomes, controls the development of T cell clonal anergy, and may ubiquitinate membrane-associated targets for T cell activation. GRAIL1 is associated with, and regulated by, two isoforms of otubain 1 (the ubiquitin-specific protease). Additional E3s belonging to this group include human (h)Goliath and Xenopus GREUL1 (Goliath Related E3 Ubiquitin Ligase
Probab=97.19 E-value=0.0029 Score=58.46 Aligned_cols=85 Identities=15% Similarity=0.173 Sum_probs=62.6
Q ss_pred cccccCCCCCC-ccCCcCceEEEEEeecccccCcchHHHHHHHHHhCCCcEEEEEeCCC-ccCcc--cCCCCCCCCeEEe
Q 005034 449 YVGECQDSSNF-NQDLVQGNLLICSYSIRFVLGLSTIKQAFETAKNLSAAGIVFYMDPF-VIGFQ--LNPTPMKMPGIII 524 (718)
Q Consensus 449 ~~~~c~~~~~~-~~~~~~g~i~~~~~~~~~~~~~~~~~~~~~~~~~~ga~~vi~~~~~~-~~~~~--~~~~~~~~p~~~~ 524 (718)
..+.|...... ......|+|+++.| |.|+|.+|..+++.+||.++|+|++.. ..... .......+|.++|
T Consensus 43 ~~~gC~~~~~~~~~~~~~g~IaLV~R------G~C~F~~K~~nA~~aGA~aVIIyn~~~~~~~~~~m~~~~~~~ip~v~I 116 (138)
T cd02122 43 DHYGCDPDTRFPIPPNGEPWIALIQR------GNCTFEEKIKLAAERNASAVVIYNNPGTGNETVKMSHPGTGDIVAIMI 116 (138)
T ss_pred CcCCCCCCccccCCccCCCeEEEEEC------CCCCHHHHHHHHHHCCCcEEEEEECCCCCCceeeccCCCCCcceEEEE
Confidence 45678855432 34568999999998 789999999999999999999999886 21111 1222346787665
Q ss_pred cCcchHHHHHHHHhcc
Q 005034 525 PSPDDSKILLQYYNSS 540 (718)
Q Consensus 525 ~~~~~~~~l~~~~~~~ 540 (718)
+..++..|+.++...
T Consensus 117 -s~~~G~~l~~~l~~G 131 (138)
T cd02122 117 -TNPKGMEILELLERG 131 (138)
T ss_pred -cHHHHHHHHHHHHcC
Confidence 668888888887654
No 55
>cd04813 PA_1 PA_1: Protease-associated (PA) domain subgroup 1. A subgroup of PA-domain containing proteins. Proteins in this subgroup contain a RING-finger (Really Interesting New Gene) domain C-terminal to this PA domain. The PA domain is an insert domain in a diverse fraction of proteases. The significance of the PA domain to many of the proteins in which it is inserted is undetermined. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate. Proteins in this group contain a C-terminal RING-finger domain. Proteins into which the PA domain is inserted include the following: i) various signal peptide peptidases: such as hSPPL2a and 2b, ii) various E3 ubiquitin ligases similar to human GRAIL (gene related to anergy in lymphocytes) protein, iii) various proteins containing a RING finger motif such as Arabid
Probab=97.16 E-value=0.0019 Score=57.84 Aligned_cols=81 Identities=12% Similarity=0.133 Sum_probs=60.7
Q ss_pred cccccCCCCCCccCCcCceEEEEEeecccccCcchHHHHHHHHHhCCCcEEEEEeCCCccCc---c--cCCCCCCCCeEE
Q 005034 449 YVGECQDSSNFNQDLVQGNLLICSYSIRFVLGLSTIKQAFETAKNLSAAGIVFYMDPFVIGF---Q--LNPTPMKMPGII 523 (718)
Q Consensus 449 ~~~~c~~~~~~~~~~~~g~i~~~~~~~~~~~~~~~~~~~~~~~~~~ga~~vi~~~~~~~~~~---~--~~~~~~~~p~~~ 523 (718)
..+.|... +...++|+|+++.| |.|++.+|..+++++||.++|+|++....+. . .......+|.++
T Consensus 26 p~~gC~~~---~~~~l~gkIvLV~R------G~CsF~~K~~nAq~aGA~avII~n~~~~~~~~~m~~~~~~~~v~IPav~ 96 (117)
T cd04813 26 PTDACSLQ---EHAEIDGKVALVLR------GGCGFLDKVMWAQRRGAKAVIVGDDEPGRGLITMFSNGDTDNVTIPAMF 96 (117)
T ss_pred CCCCCCCC---CcCCcCCeEEEEEC------CCCCHHHHHHHHHHCCCcEEEEEECCCcccceecccCCCCCCcEEEEEE
Confidence 35778644 55778999999998 7899999999999999999999987753221 1 112345688888
Q ss_pred ecCcchHHHHHHHHhc
Q 005034 524 IPSPDDSKILLQYYNS 539 (718)
Q Consensus 524 ~~~~~~~~~l~~~~~~ 539 (718)
+ +..++..|..+.+.
T Consensus 97 I-s~~~g~~L~~l~~~ 111 (117)
T cd04813 97 T-SRTSYHLLSSLLPK 111 (117)
T ss_pred E-cHHHHHHHHHhccc
Confidence 7 57788888776554
No 56
>cd02124 PA_PoS1_like PA_PoS1_like: Protease-associated (PA) domain PoS1-like. This group includes various PA domain-containing proteins similar to Pleurotus ostreatus (Po)S1. PoSl, the main extracellular protease in P. ostreatus is a subtilisin-like serine protease belonging to the peptidase S8 family. Ca2+ and Mn2+ both stimulate the protease activity of (Po)S1. Ca2+ protects PoS1 from autolysis. PoS1 is a monomeric glycoprotein, which may play a role in the regulation of laccases in lignin formation. (Po)S1 participates in the degradation of POXA1b, and in the activation of POXA3, (POXA1b and POXA3 are laccase isoenzymes), but its effect may be indirect. The significance of the PA domain to PoS1 has not been ascertained. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate.
Probab=97.09 E-value=0.0035 Score=57.23 Aligned_cols=83 Identities=13% Similarity=0.178 Sum_probs=59.1
Q ss_pred cccccCCCCCCccCCcCceEEEEEeecccccCcchHHHHHHHHHhCCCcEEEEEeCCCccCcccCCCCCCCCeEEecCcc
Q 005034 449 YVGECQDSSNFNQDLVQGNLLICSYSIRFVLGLSTIKQAFETAKNLSAAGIVFYMDPFVIGFQLNPTPMKMPGIIIPSPD 528 (718)
Q Consensus 449 ~~~~c~~~~~~~~~~~~g~i~~~~~~~~~~~~~~~~~~~~~~~~~~ga~~vi~~~~~~~~~~~~~~~~~~~p~~~~~~~~ 528 (718)
..+.|..... +..+++|+|+++.| +.|.+.+|..+++++||.++|+|++....-.........+|.+.+ ..
T Consensus 40 ~~~gC~~~~~-~~~~~~g~IaLv~r------g~c~f~~K~~nA~~aGA~aviiyn~~~~~~~~~~~~~~~~~~~~~--~~ 110 (129)
T cd02124 40 ADDACQPLPD-DTPDLSGYIVLVRR------GTCTFATKAANAAAKGAKYVLIYNNGSGPTDQVGSDADSIIAAVT--PE 110 (129)
T ss_pred CcccCcCCCc-ccccccCeEEEEEC------CCCCHHHHHHHHHHcCCcEEEEEECCCCcccccCCCCcceeeEEe--HH
Confidence 3567875433 22368999999998 679999999999999999999999775311111223334555544 88
Q ss_pred hHHHHHHHHhcc
Q 005034 529 DSKILLQYYNSS 540 (718)
Q Consensus 529 ~~~~l~~~~~~~ 540 (718)
++..|++.+...
T Consensus 111 ~G~~l~~~l~~G 122 (129)
T cd02124 111 DGEAWIDALAAG 122 (129)
T ss_pred HHHHHHHHHhcC
Confidence 999998877653
No 57
>cd04818 PA_subtilisin_1 PA_subtilisin_1: Protease-associated domain containing subtilisin-like proteases, subgroup 1. A subgroup of PA domain-containing subtilisin-like proteases. The significance of the PA domain to many of the proteins in which it is inserted is undetermined. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate. Proteins into which the PA domain is inserted include the following subtilisin-like proteases: i) melon cucumisin, ii) Arabidopsis thaliana Ara12, iii) Alnus glutinosa ag12, iv) members of the tomato P69 family, and v) tomato LeSBT2. However, these proteins belong to other subtilisin-like subgroups. Relatively little is known about proteins in this subgroup.
Probab=97.05 E-value=0.0036 Score=56.40 Aligned_cols=83 Identities=14% Similarity=0.193 Sum_probs=61.0
Q ss_pred cccccCCCCCCccCCcCceEEEEEeecccccCcchHHHHHHHHHhCCCcEEEEEeCCCccCccc---CCCCCCCCeEEec
Q 005034 449 YVGECQDSSNFNQDLVQGNLLICSYSIRFVLGLSTIKQAFETAKNLSAAGIVFYMDPFVIGFQL---NPTPMKMPGIIIP 525 (718)
Q Consensus 449 ~~~~c~~~~~~~~~~~~g~i~~~~~~~~~~~~~~~~~~~~~~~~~~ga~~vi~~~~~~~~~~~~---~~~~~~~p~~~~~ 525 (718)
....|..... . .+++|||++|.+ +.|++..+..+++++||.++|++++........ ......+|.+++
T Consensus 26 ~~~~C~~~~~-~-~~v~GkIvL~~r------g~c~f~~k~~~a~~aGA~gvIi~~~~~~~~~~~~~~~~~~~~iP~v~V- 96 (118)
T cd04818 26 NTDGCTAFTN-A-AAFAGKIALIDR------GTCNFTVKVLNAQNAGAIAVIVANNVAGGAPITMGGDDPDITIPAVMI- 96 (118)
T ss_pred cccccCCCCc-C-CCCCCEEEEEEC------CCCCHHHHHHHHHHCCCeEEEEEECCCCCcceeccCCCCCCEEeEEEe-
Confidence 3567865443 3 348999999987 458888999999999999999999876421111 112346888887
Q ss_pred CcchHHHHHHHHhcc
Q 005034 526 SPDDSKILLQYYNSS 540 (718)
Q Consensus 526 ~~~~~~~l~~~~~~~ 540 (718)
+..++..|+.|++..
T Consensus 97 ~~~~g~~l~~~l~~g 111 (118)
T cd04818 97 SQADGDALKAALAAG 111 (118)
T ss_pred cHHHHHHHHHHHhcC
Confidence 778899999998753
No 58
>cd02125 PA_VSR PA_VSR: Protease-associated (PA) domain-containing plant vacuolar sorting receptor (VSR). This group includes various PA domain-containing VSRs such as garden pea BP-80, pumpkin PV72, and various Arabidopsis VSRs including AtVSR1. In contrast to most eukaryotes, which only have one or two VSRs, plants have several. This may in part be a reflection of having a more complex vacuolar system with both lytic vacuoles and storage vacuoles. The lytic vacuole is thought to be equivalent to the mammalian lysosome and the yeast vacuole. Pea BP-80 is a type 1 transmembrane protein, involved in the targeting of proteins to the lytic vacuole; it has been suggested that this protein also mediates targeting to the storage vacuole. PV72 and AtVSR1 may mediate transport of seed storage proteins to protein storage vacuoles. The significance of the PA domain to VSRs has not been ascertained. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may partic
Probab=97.04 E-value=0.0038 Score=56.88 Aligned_cols=84 Identities=12% Similarity=0.066 Sum_probs=60.7
Q ss_pred ccccCCCCCCc-cC----CcCceEEEEEeecccccCcchHHHHHHHHHhCCCcEEEEEeCCCccCccc----------CC
Q 005034 450 VGECQDSSNFN-QD----LVQGNLLICSYSIRFVLGLSTIKQAFETAKNLSAAGIVFYMDPFVIGFQL----------NP 514 (718)
Q Consensus 450 ~~~c~~~~~~~-~~----~~~g~i~~~~~~~~~~~~~~~~~~~~~~~~~~ga~~vi~~~~~~~~~~~~----------~~ 514 (718)
.+.|+...... +. ...++|+++.| |.|+|.+|+.+++.+||.++|+|++....-... ..
T Consensus 22 ~~gC~~~~~~~~~~~~~~~~~~~IvLv~R------G~C~F~~K~~~Aq~aGA~avII~n~~~~~~~~m~~~~~~~~~~~~ 95 (127)
T cd02125 22 RTGCKEFDVFFKPKKSEPGRRPVILLLDR------GGCFFTLKAWNAQQAGAAAVLVADNVDEPLLTMDTPEESGSADYI 95 (127)
T ss_pred cccCCCCcccccccccccCCCceEEEEEC------CCcCHHHHHHHHHHCCCcEEEEEECCCCccccccCcccccccccC
Confidence 56888765533 22 36789999998 789999999999999999999999865311110 11
Q ss_pred CCCCCCeEEecCcchHHHHHHHHhcc
Q 005034 515 TPMKMPGIIIPSPDDSKILLQYYNSS 540 (718)
Q Consensus 515 ~~~~~p~~~~~~~~~~~~l~~~~~~~ 540 (718)
....+|.+++ +..++..|+..+...
T Consensus 96 ~~i~IP~v~I-s~~~G~~L~~~l~~g 120 (127)
T cd02125 96 EKITIPSALI-TKAFGEKLKKAISNG 120 (127)
T ss_pred CCceEeEEEE-CHHHHHHHHHHHhcC
Confidence 2345788887 557888888877653
No 59
>cd02126 PA_EDEM3_like PA_EDEM3_like: protease associated domain (PA) domain-containing EDEM3-like proteins. This group contains various PA domain-containing proteins similar to mouse EDEM3 (ER-degradation-enhancing mannosidase-like 3 protein). EDEM3 contains a region, similar to Class I alpha-mannosidases (gylcosyl hydrolase family 47), N-terminal to the PA domain. EDEM3 accelerates glycoprotein ERAD (ER-associated degradation). In transfected mammalian cells, overexpression of EDEM3 enhances the mannose trimming from the N-glycans, of a model misfolded protein [alpha1-antitrypsin null (Hong Kong)] as well as, from total glycoproteins. Mannose trimming appears to be involved in the selection of ERAD substrates. EDEM3 has a different specificity of trimming than ER alpha-mannosidase 1. The significance of the PA domain to EDEM3 has not been ascertained. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or pr
Probab=97.00 E-value=0.0036 Score=57.06 Aligned_cols=82 Identities=13% Similarity=0.172 Sum_probs=59.8
Q ss_pred ccccCCCCCCccCCcCceEEEEEeecccccCcchHHHHHHHHHhCCCcEEEEEeCCCcc-----Ccc---cCC---CCCC
Q 005034 450 VGECQDSSNFNQDLVQGNLLICSYSIRFVLGLSTIKQAFETAKNLSAAGIVFYMDPFVI-----GFQ---LNP---TPMK 518 (718)
Q Consensus 450 ~~~c~~~~~~~~~~~~g~i~~~~~~~~~~~~~~~~~~~~~~~~~~ga~~vi~~~~~~~~-----~~~---~~~---~~~~ 518 (718)
...|.... +...++|+|+++.| +.|++.+|..+++.+||.++|++++.... .+. ..+ ....
T Consensus 27 ~~gC~~~~--~~~~~~gkIaLv~R------G~C~f~~K~~~Aq~aGA~avII~n~~~~~~~~~~~~~~m~~~~~~~~~~~ 98 (126)
T cd02126 27 YRACSEIT--NAEEVKGKIAIMER------GDCMFVEKARRVQKAGAIGGIVIDNNEGSSSDTAPMFAMSGDGDSTDDVT 98 (126)
T ss_pred hhcccCCC--CccccCceEEEEEC------CCCcHHHHHHHHHHCCCcEEEEEECCCCccccccceeEeecCCCCCCCCe
Confidence 46787432 25568999999998 78999999999999999999999866431 111 111 2457
Q ss_pred CCeEEecCcchHHHHHHHHhcc
Q 005034 519 MPGIIIPSPDDSKILLQYYNSS 540 (718)
Q Consensus 519 ~p~~~~~~~~~~~~l~~~~~~~ 540 (718)
||.+++ +..++..|++++...
T Consensus 99 IP~v~I-~~~dG~~L~~~l~~~ 119 (126)
T cd02126 99 IPVVFL-FSKEGSKLLAAIKEH 119 (126)
T ss_pred EEEEEE-EHHHHHHHHHHHHhC
Confidence 888886 567778888877653
No 60
>cd00538 PA PA: Protease-associated (PA) domain. The PA domain is an insert domain in a diverse fraction of proteases. The significance of the PA domain to many of the proteins in which it is inserted is undetermined. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate. Proteins into which the PA domain is inserted include the following: i) various signal peptide peptidases including, hSPPL2a and 2b which catalyze the intramembrane proteolysis of tumor necrosis factor alpha, ii) various proteins containing a C3H2C3 RING finger including, Arabidopsis ReMembR-H2 protein and various E3 ubiquitin ligases such as human GRAIL (gene related to anergy in lymphocytes), iii) EDEM3 (ER-degradation-enhancing mannosidase-like 3 protein), iv) various plant vacuolar sorting receptors such as Pisum sativum BP-80, v) g
Probab=96.99 E-value=0.0035 Score=56.92 Aligned_cols=85 Identities=19% Similarity=0.264 Sum_probs=63.0
Q ss_pred cccccCCCCC-CccCCcCceEEEEEeecccccCcchHHHHHHHHHhCCCcEEEEEeCCCccCccc-C----CCCCCCCeE
Q 005034 449 YVGECQDSSN-FNQDLVQGNLLICSYSIRFVLGLSTIKQAFETAKNLSAAGIVFYMDPFVIGFQL-N----PTPMKMPGI 522 (718)
Q Consensus 449 ~~~~c~~~~~-~~~~~~~g~i~~~~~~~~~~~~~~~~~~~~~~~~~~ga~~vi~~~~~~~~~~~~-~----~~~~~~p~~ 522 (718)
....|..... +...+++|||++|.+ +.|.+..+..+++++||.|+|++++........ . .....+|.+
T Consensus 29 ~~~~C~~~~~~~~~~~~~GkIvl~~~------g~~~~~~k~~~a~~~GA~gvii~~~~~~~~~~~~~~~~~~~~~~iP~~ 102 (126)
T cd00538 29 PLVGCGYGTTDDSGADVKGKIVLVRR------GGCSFSEKVKNAQKAGAKAVIIYNNGDDPGPQMGSVGLESTDPSIPTV 102 (126)
T ss_pred ceEEEecCcccccCCCccceEEEEEC------CCcCHHHHHHHHHHCCCEEEEEEECCCCcccccccccCCCCCCcEeEE
Confidence 4566864321 456778999999987 457889999999999999999999876321111 1 244578988
Q ss_pred EecCcchHHHHHHHHhcc
Q 005034 523 IIPSPDDSKILLQYYNSS 540 (718)
Q Consensus 523 ~~~~~~~~~~l~~~~~~~ 540 (718)
++ +..++..|+.++.+.
T Consensus 103 ~i-s~~~g~~l~~~~~~~ 119 (126)
T cd00538 103 GI-SYADGEALLSLLEAG 119 (126)
T ss_pred Ee-CHHHHHHHHHHHhcC
Confidence 88 679999999998753
No 61
>cd02132 PA_GO-like PA_GO-like: Protease-associated domain containing proteins like Arabidopsis thaliana growth-on protein GRO10. This group contains various PA domain-containing proteins similar to the functionally uncharacterized Arabidopsis GRO10. The PA domain may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate.
Probab=96.81 E-value=0.0067 Score=56.30 Aligned_cols=80 Identities=13% Similarity=0.237 Sum_probs=59.3
Q ss_pred ccccCCCCCCccCCcCceEEEEEeecccccCcchHHHHHHHHHhCCCcEEEEEeCCCcc-CcccC----CCCCCCCeEEe
Q 005034 450 VGECQDSSNFNQDLVQGNLLICSYSIRFVLGLSTIKQAFETAKNLSAAGIVFYMDPFVI-GFQLN----PTPMKMPGIII 524 (718)
Q Consensus 450 ~~~c~~~~~~~~~~~~g~i~~~~~~~~~~~~~~~~~~~~~~~~~~ga~~vi~~~~~~~~-~~~~~----~~~~~~p~~~~ 524 (718)
.+.|.... ..++|+|+++.| +.|++.+|..+++++||.++|+|++.... .+... .....||.+++
T Consensus 48 ~~gC~~~~----~~~~g~IvLV~R------G~C~F~~K~~nA~~aGA~avIv~n~~~~~~~~~~~~~~~~~~~~IP~v~I 117 (139)
T cd02132 48 LDCCSPST----SKLSGSIALVER------GECAFTEKAKIAEAGGASALLIINDQEELYKMVCEDNDTSLNISIPVVMI 117 (139)
T ss_pred ccccCCCC----cccCCeEEEEEC------CCCCHHHHHHHHHHcCCcEEEEEECCCcccccccCCCCCCCCCcEeEEEe
Confidence 46787543 368999999998 78999999999999999999999876521 11111 11357886654
Q ss_pred cCcchHHHHHHHHhcc
Q 005034 525 PSPDDSKILLQYYNSS 540 (718)
Q Consensus 525 ~~~~~~~~l~~~~~~~ 540 (718)
+..++..|+.++...
T Consensus 118 -s~~~G~~L~~~l~~g 132 (139)
T cd02132 118 -PQSAGDALNKSLDQG 132 (139)
T ss_pred -cHHHHHHHHHHHHcC
Confidence 678888888887654
No 62
>cd02130 PA_ScAPY_like PA_ScAPY_like: Protease-associated domain containing proteins like Saccharomyces cerevisiae aminopeptidase Y (ScAPY). This group contains various PA domain-containing proteins similar to the S. cerevisiae APY, including Trichophyton rubrum leucine aminopeptidase 1(LAP1). Proteins in this group belong to the peptidase M28 family. ScAPY hydrolyzes amino acid-4-methylcoumaryl-7-amides (MCAs). ScAPY more rapidly hydrolyzes dipeptidyl-MCAs. Hydrolysis of amino acid-MCAs or dipeptides is stimulated by Co2+ while the hydrolysis of dipeptidyl-MCAs, tripeptides, and longer peptides is inhibited by Co2+. ScAPY is vacuolar and is activated by proteolytic processing. LAP1 is a secreted leucine aminopeptidase. The significance of the PA domain to these proteins has not been ascertained. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stab
Probab=96.79 E-value=0.0079 Score=54.50 Aligned_cols=82 Identities=21% Similarity=0.255 Sum_probs=58.8
Q ss_pred ccccCCCCCCccCCcCceEEEEEeecccccCcchHHHHHHHHHhCCCcEEEEEeCCCcc---CcccCCCCCCCCeEEecC
Q 005034 450 VGECQDSSNFNQDLVQGNLLICSYSIRFVLGLSTIKQAFETAKNLSAAGIVFYMDPFVI---GFQLNPTPMKMPGIIIPS 526 (718)
Q Consensus 450 ~~~c~~~~~~~~~~~~g~i~~~~~~~~~~~~~~~~~~~~~~~~~~ga~~vi~~~~~~~~---~~~~~~~~~~~p~~~~~~ 526 (718)
...|... .+ +.+++|||+++.| +.|.+.+|..+++++||.++|+|++.... .....+....+|.+++ +
T Consensus 31 ~~gC~~~-~~-~~~~~gkIvlv~r------g~c~f~~K~~~A~~aGA~~vIv~n~~~~~~~~~~~~~~~~~~Ip~v~I-s 101 (122)
T cd02130 31 NLGCDAA-DY-PASVAGNIALIER------GECPFGDKSALAGAAGAAAAIIYNNVPAGGLSGTLGEPSGPYVPTVGI-S 101 (122)
T ss_pred CCCCCcc-cC-CcCCCCEEEEEEC------CCCCHHHHHHHHHHCCCcEEEEEECCCCcccccccCCCCCCEeeEEEe-c
Confidence 3457632 22 2468999999998 67889999999999999999999977311 1112223456888876 6
Q ss_pred cchHHHHHHHHhcc
Q 005034 527 PDDSKILLQYYNSS 540 (718)
Q Consensus 527 ~~~~~~l~~~~~~~ 540 (718)
..++..|+..+...
T Consensus 102 ~~~G~~L~~~l~~g 115 (122)
T cd02130 102 QEDGKALVAALANG 115 (122)
T ss_pred HHHHHHHHHHHhcC
Confidence 68888888877654
No 63
>cd02123 PA_C_RZF_like PA_C-RZF_ like: Protease-associated (PA) domain C_RZF-like. This group includes various PA domain-containing proteins similar to C-RZF (chicken embryo RING zinc finger) protein. These proteins contain a C3H2C3 RING finger. C-RZF is expressed in embryo cells and is restricted mainly to brain and heart, it is localized to both the nucleus and endosomes. Additional C3H2C3 RING finger proteins belonging to this group, include Arabidopsis ReMembR-H2 protein and mouse sperizin. ReMembR-H2 is likely to be an integral membrane protein, and to traffic through the endosomal pathway. Sperizin is expressed in haploid germ cells and localized in the cytoplasm, it may participate in spermatogenesis. The significance of the PA domain to these proteins has not been ascertained. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and acce
Probab=96.78 E-value=0.0064 Score=57.36 Aligned_cols=84 Identities=13% Similarity=0.244 Sum_probs=61.6
Q ss_pred ccccCCCCCC--ccCCcCceEEEEEeecccccCcchHHHHHHHHHhCCCcEEEEEeCCCccCcccCC-----CCCCCCeE
Q 005034 450 VGECQDSSNF--NQDLVQGNLLICSYSIRFVLGLSTIKQAFETAKNLSAAGIVFYMDPFVIGFQLNP-----TPMKMPGI 522 (718)
Q Consensus 450 ~~~c~~~~~~--~~~~~~g~i~~~~~~~~~~~~~~~~~~~~~~~~~~ga~~vi~~~~~~~~~~~~~~-----~~~~~p~~ 522 (718)
.+.|...... +.....|+|+++.| |.|+|.+|..+++++||.++|+|++.......... ....+|.+
T Consensus 50 ~~gC~~~~~~~~~~~~~~g~IvLV~R------G~CtF~~Kv~nAq~aGA~avII~n~~~~~~~~m~~~~~~~~~v~IP~v 123 (153)
T cd02123 50 LNACSPIENPPLNSNASGSFIVLIRR------GNCSFETKVRNAQRAGYKAAIVYNDESNDLISMSGNDQEIKGIDIPSV 123 (153)
T ss_pred cccCCCCcccccccccCCCeEEEEEC------CCCCHHHHHHHHHHCCCCEEEEEECCCCcceeccCCCCCCcCCEEEEE
Confidence 5678754431 33678999999998 78999999999999999999999986532111111 24578888
Q ss_pred EecCcchHHHHHHHHhcc
Q 005034 523 IIPSPDDSKILLQYYNSS 540 (718)
Q Consensus 523 ~~~~~~~~~~l~~~~~~~ 540 (718)
++ +..++..|..++...
T Consensus 124 ~I-s~~dg~~L~~~l~~~ 140 (153)
T cd02123 124 FV-GKSTGEILKKYASYE 140 (153)
T ss_pred Ee-eHHHHHHHHHHHhcC
Confidence 86 667788888877653
No 64
>cd04819 PA_2 PA_2: Protease-associated (PA) domain subgroup 2. A subgroup of PA-domain containing proteins. The PA domain is an insert domain in a diverse fraction of proteases. The significance of the PA domain to many of the proteins in which it is inserted is undetermined. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate. Proteins in this group contain a C-terminal RING-finger domain. Proteins into which the PA domain is inserted include the following: i) various signal peptide peptidases: such as hSPPL2a and 2b, ii) various E3 ubiquitin ligases similar to human GRAIL (gene related to anergy in lymphocytes) protein, iii) various proteins containing a RING finger motif such as Arabidopsis ReMembR-H2 protein, iv) EDEM3 (ER-degradation-enhancing mannosidase-like 3 protein), v) various plant vacuola
Probab=95.15 E-value=0.14 Score=46.69 Aligned_cols=74 Identities=16% Similarity=0.130 Sum_probs=53.9
Q ss_pred CccCCcCceEEEEEeecccccCcc--hHHHHHHHHHhCCCcEEEEEeCCCccCc--cc----CCCCCCCCeEEecCcchH
Q 005034 459 FNQDLVQGNLLICSYSIRFVLGLS--TIKQAFETAKNLSAAGIVFYMDPFVIGF--QL----NPTPMKMPGIIIPSPDDS 530 (718)
Q Consensus 459 ~~~~~~~g~i~~~~~~~~~~~~~~--~~~~~~~~~~~~ga~~vi~~~~~~~~~~--~~----~~~~~~~p~~~~~~~~~~ 530 (718)
+...+++|||+++.++ .+ .+..++.++.+.||.++|++++...... .. ......+|.+.+ +..++
T Consensus 38 ~~~~~v~GkIvlv~~g------~~~~~~~~k~~~A~~~GA~avi~~~~~~g~~~~~~~~~~~~~~~~~IP~v~I-s~edg 110 (127)
T cd04819 38 FDGLDLEGKIAVVKRD------DPDVDRKEKYAKAVAAGAAAFVVVNTVPGVLPATGDEGTEDGPPSPIPAASV-SGEDG 110 (127)
T ss_pred cCCCCCCCeEEEEEcC------CCchhHHHHHHHHHHCCCEEEEEEeCCCCcCcccccccccCCCCCCCCEEEE-eHHHH
Confidence 3345689999999983 44 7789999999999999999986543211 11 123456898876 67888
Q ss_pred HHHHHHHhc
Q 005034 531 KILLQYYNS 539 (718)
Q Consensus 531 ~~l~~~~~~ 539 (718)
..|...++.
T Consensus 111 ~~L~~~l~~ 119 (127)
T cd04819 111 LRLARVAER 119 (127)
T ss_pred HHHHHHHhc
Confidence 888887765
No 65
>cd02128 PA_TfR PA_TfR: Protease-associated domain containing proteins like transferrin receptor (TfR). This group contains various PA domain-containing proteins similar to human TfR1 and TfR2. TfR1 and TfR2 are type II membrane proteins, belonging to the peptidase M28 family. TfR1 is homodimeric, widely expressed, and a key player in the uptake of iron-loaded transferrin (Tf) into cells. The TfR1 homodimer binds two molecules of Tf and this complex is internalized. In addition to its role in iron uptake, TfR1 may participate in cell growth and proliferation. TfR2 also binds Tf but with a significantly lower affinity than does TfR1. TfR2 is expressed chiefly in hepatocytes, hematopoietic cells, and duodenal crypt cells; its expression overlaps with that of hereditary hemochromatosis protein (HFE). TfR2 is involved in iron homeostasis. HFE and TfR2 interact in cells. By one model for serum iron sensing, at low or basal iron concentrations, HFE and TFR1 form a complex at the plasma membra
Probab=90.38 E-value=0.41 Score=46.23 Aligned_cols=40 Identities=25% Similarity=0.463 Sum_probs=35.2
Q ss_pred cCCcCceEEEEEeecccccCcchHHHHHHHHHhCCCcEEEEEeCCC
Q 005034 461 QDLVQGNLLICSYSIRFVLGLSTIKQAFETAKNLSAAGIVFYMDPF 506 (718)
Q Consensus 461 ~~~~~g~i~~~~~~~~~~~~~~~~~~~~~~~~~~ga~~vi~~~~~~ 506 (718)
..+++|+|+|+.+ +.|.+.+|+.+|+..||.|+|+|++..
T Consensus 51 gv~v~GkIvLvr~------G~~~~~~Kv~~A~~~GA~gvIiy~Dp~ 90 (183)
T cd02128 51 GVSVNGSVVLVRA------GKISFAEKVANAEKLGAVGVLIYPDPA 90 (183)
T ss_pred CCCCCCeEEEEEC------CCCCHHHHHHHHHHCCCEEEEEecCHH
Confidence 3468999999998 567789999999999999999998864
No 66
>cd04815 PA_M28_2 PA_M28_2: Protease-associated (PA) domain, peptidase family M28, subfamily-2. A subfamily of PA-domain containing proteins belonging to the peptidase family M28. Family M28 contains aminopeptidases and carboxypeptidases, and has co-catalytic zinc ions. The PA domain is an insert domain in a diverse fraction of proteases. The significance of the PA domain to many of the proteins in which it is inserted is undetermined. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate. Proteins into which the PA domain is inserted include the following members of the peptidase family M28: i) prostate-specific membrane antigen (PSMA), ii) yeast aminopeptidase Y, and ii) human TfR (transferrin receptor)1 and human TfR2. The proteins listed above belong to other subfamilies; relatively little is known a
Probab=90.28 E-value=1.1 Score=41.17 Aligned_cols=81 Identities=15% Similarity=0.083 Sum_probs=52.0
Q ss_pred CccCCcCceEEEEEeecccccCcchHHHH-------HHHHHhCCCcEEEEEeCCCc------cCcccC-CCCCCCCeEEe
Q 005034 459 FNQDLVQGNLLICSYSIRFVLGLSTIKQA-------FETAKNLSAAGIVFYMDPFV------IGFQLN-PTPMKMPGIII 524 (718)
Q Consensus 459 ~~~~~~~g~i~~~~~~~~~~~~~~~~~~~-------~~~~~~~ga~~vi~~~~~~~------~~~~~~-~~~~~~p~~~~ 524 (718)
+...+++|||+++.+..+......++-.+ ...+.+.||.++|+++.... .+.... .....+|.+.+
T Consensus 33 ~~~~~v~GKIvlv~~~~~~~~~~~~~~~k~~~r~~~~~~A~~~GA~avIv~s~~~~~~~~~~~G~~~~~~~~~~IP~v~i 112 (134)
T cd04815 33 APAGAVKGKIVFFNQPMVRTQTGSGYGPTVAYRRRGAVEAAKKGAVAVLIRSIGTDSHRSPHTGMMSYDDGVPKIPAAAI 112 (134)
T ss_pred cchhhcCCeEEEecCCccccCchhhcCchhhhhhHHHHHHHhCCCEEEEEEecCcccCCCCcCCccccCCCCCCCCEEEe
Confidence 34567999999998843321111155554 68899999999999985422 222222 33456898886
Q ss_pred cCcchHHHHHHHHhcc
Q 005034 525 PSPDDSKILLQYYNSS 540 (718)
Q Consensus 525 ~~~~~~~~l~~~~~~~ 540 (718)
+..++..|...+...
T Consensus 113 -s~ed~~~L~r~l~~g 127 (134)
T cd04815 113 -SVEDADMLERLAARG 127 (134)
T ss_pred -chhcHHHHHHHHhCC
Confidence 566777777666543
No 67
>cd04822 PA_M28_1_3 PA_M28_1_3: Protease-associated (PA) domain, peptidase family M28, subfamily-1, subgroup 3. A subgroup of PA-domain containing proteins belonging to the peptidase family M28. Family M28 contains aminopeptidases and carboxypeptidases, and has co-catalytic zinc ions. The PA domain is an insert domain in a diverse fraction of proteases. The significance of the PA domain to many of the proteins in which it is inserted is undetermined. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate. Proteins into which the PA domain is inserted include the following members of the peptidase family M28: i) prostate-specific membrane antigen (PSMA), ii) yeast aminopeptidase Y, and ii) human TfR (transferrin receptor)1 and human TfR2. The proteins listed above belong to other subgroups; relatively litt
Probab=86.37 E-value=1.5 Score=41.01 Aligned_cols=50 Identities=14% Similarity=0.214 Sum_probs=37.9
Q ss_pred CCccCCcCceEEEEEeecc--------c----ccCcchHHHHHHHHHhCCCcEEEEEeCCCc
Q 005034 458 NFNQDLVQGNLLICSYSIR--------F----VLGLSTIKQAFETAKNLSAAGIVFYMDPFV 507 (718)
Q Consensus 458 ~~~~~~~~g~i~~~~~~~~--------~----~~~~~~~~~~~~~~~~~ga~~vi~~~~~~~ 507 (718)
.+...+++|||+++.+... + ...-|++..|..++...||.|||+|++...
T Consensus 40 Dy~giDVkGKIVlv~~g~P~~~~~~~~~~~~~~~~~~~~~~K~~~A~~~GA~aVIv~~d~~~ 101 (151)
T cd04822 40 DYAGLDVKGKIVLVLRHEPQEDDANSRFNGPGLTRHAGLRYKATNARRHGAAAVIVVNGPNS 101 (151)
T ss_pred hccCCCCCCeEEEEEcCCcccccccccccccccccccCHHHHHHHHHHCCCeEEEEEeCCcc
Confidence 4456689999999987521 0 012257889999999999999999998764
No 68
>cd04814 PA_M28_1 PA_M28_1: Protease-associated (PA) domain, peptidase family M28, subfamily-1. A subfamily of PA-domain containing proteins belonging to the peptidase family M28. Family M28 contains aminopeptidases and carboxypeptidases, and has co-catalytic zinc ions. The PA domain is an insert domain in a diverse fraction of proteases. The significance of the PA domain to many of the proteins in which it is inserted is undetermined. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate. Proteins into which the PA domain is inserted include the following members of the peptidase family M28: i) prostate-specific membrane antigen (PSMA), ii) yeast aminopeptidase Y, and ii) human TfR (transferrin receptor)1 and human TfR2. The proteins listed above belong to other subfamilies, relatively little is known a
Probab=85.88 E-value=1.6 Score=40.51 Aligned_cols=49 Identities=16% Similarity=0.149 Sum_probs=36.7
Q ss_pred CCccCCcCceEEEEEeeccccc------Cc------chHHHHHHHHHhCCCcEEEEEeCCC
Q 005034 458 NFNQDLVQGNLLICSYSIRFVL------GL------STIKQAFETAKNLSAAGIVFYMDPF 506 (718)
Q Consensus 458 ~~~~~~~~g~i~~~~~~~~~~~------~~------~~~~~~~~~~~~~ga~~vi~~~~~~ 506 (718)
.+...+++|||+++.++.+... +. .++..|...+.+.||.|+|++++..
T Consensus 40 DYag~DVkGKIVlv~~g~P~~~~~~~~~~~~~~~~~~~~~~K~~~A~~~GA~gvIii~~~~ 100 (142)
T cd04814 40 DYAGLDVKGKVVVVLRNDPQGEPGAGDFGGKAMTYYGRWTYKYEEAARHGAAGVLIVHELA 100 (142)
T ss_pred hcCCCCCCCcEEEEEcCCCCcccccccccccccccccCHHHHHHHHHHCCCcEEEEEeCCC
Confidence 4556789999999987533110 01 1577899999999999999999875
No 69
>cd02131 PA_hNAALADL2_like PA_hNAALADL2_like: Protease-associated domain containing proteins like human N-acetylated alpha-linked acidic dipeptidase-like 2 protein (hNAALADL2). This group contains various PA domain-containing proteins similar to hNAALADL2. The function of hNAALADL2 is unknown. This gene has been mapped to a chromosomal region associated with Cornelia de Lange syndrome. The significance of the PA domain to hNAALADL2 has not been ascertained. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate.
Probab=85.82 E-value=1.2 Score=41.34 Aligned_cols=39 Identities=15% Similarity=0.342 Sum_probs=33.7
Q ss_pred CCcCceEEEEEeecccccCcchHHHHHHHHHhCCCcEEEEEeCCC
Q 005034 462 DLVQGNLLICSYSIRFVLGLSTIKQAFETAKNLSAAGIVFYMDPF 506 (718)
Q Consensus 462 ~~~~g~i~~~~~~~~~~~~~~~~~~~~~~~~~~ga~~vi~~~~~~ 506 (718)
-+++|||+++.+ |....-.|+.+|+..||.|+|+|.++.
T Consensus 37 V~v~GkIvi~Ry------G~~~RG~Kv~~A~~~GA~GviIYsDP~ 75 (153)
T cd02131 37 MNVTNQIALLKL------GQAPLLYKLSLLEEAGFGGVLLYVDPC 75 (153)
T ss_pred CCccceEEEEec------cCcchHHHHHHHHHCCCeEEEEecChh
Confidence 568999999998 445567899999999999999999875
No 70
>cd04820 PA_M28_1_1 PA_M28_1_1: Protease-associated (PA) domain, peptidase family M28, subfamily-1, subgroup 1. A subgroup of PA-domain containing proteins belonging to the peptidase family M28. Family M28 contains aminopeptidases and carboxypeptidases, and has co-catalytic zinc ions. The PA domain is an insert domain in a diverse fraction of proteases. The significance of the PA domain to many of the proteins in which it is inserted is undetermined. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate. Proteins into which the PA domain is inserted include the following members of the peptidase family M28: i) prostate-specific membrane antigen (PSMA), ii) yeast aminopeptidase Y, and ii) human TfR (transferrin receptor)1 and human TfR2. The proteins listed above belong to other subgroups; relatively litt
Probab=84.30 E-value=2.1 Score=39.45 Aligned_cols=49 Identities=12% Similarity=0.129 Sum_probs=36.9
Q ss_pred CCccCCcCceEEEEEeecccccC------cchHHHHHHHHHhCCCcEEEEEeCCC
Q 005034 458 NFNQDLVQGNLLICSYSIRFVLG------LSTIKQAFETAKNLSAAGIVFYMDPF 506 (718)
Q Consensus 458 ~~~~~~~~g~i~~~~~~~~~~~~------~~~~~~~~~~~~~~ga~~vi~~~~~~ 506 (718)
.+...+++|||+++.++.....+ -..+..|..++.+.||.|+|++++..
T Consensus 42 Dy~~iDVkGKIVlv~~g~p~~~~~~~~~~~~~~~~K~~~A~~~GA~aVIi~~d~~ 96 (137)
T cd04820 42 DYAGLDVKGKIVVVLSGGPAGIPSEEGAHAHSSNEKARYAAKAGAIGMITLTTPR 96 (137)
T ss_pred hccCCCCCCeEEEEEcCCCCccccccccccccHHHHHHHHHHCCCeEEEEEeCCc
Confidence 44566899999999985431111 12477899999999999999999875
No 71
>KOG1114 consensus Tripeptidyl peptidase II [Posttranslational modification, protein turnover, chaperones]
Probab=83.08 E-value=0.82 Score=53.46 Aligned_cols=25 Identities=44% Similarity=0.846 Sum_probs=22.8
Q ss_pred CCCCCCcEEEEEccccCCCCCCCcC
Q 005034 183 ETAGEGVVIGFIDTGIDPTHPSFAD 207 (718)
Q Consensus 183 ~~~G~gv~VaVIDtGid~~Hp~~~~ 207 (718)
.|+|+||+|||+|||||+.-|-|.-
T Consensus 77 eYDGRgV~IaIlDtGvDP~apGl~v 101 (1304)
T KOG1114|consen 77 EYDGRGVTIAILDTGVDPSAPGLQV 101 (1304)
T ss_pred CCCCCceEEEEeecCCCCCCCCceE
Confidence 5999999999999999999888874
No 72
>KOG2442 consensus Uncharacterized conserved protein, contains PA domain [General function prediction only]
Probab=81.75 E-value=4.1 Score=44.57 Aligned_cols=67 Identities=15% Similarity=0.189 Sum_probs=50.0
Q ss_pred cCCcCceEEEEEeecccccCcchHHHHHHHHHhCCCcEEEEEeCCCc-----cCcccCCCCCCCCeEEecCcchHHHHH
Q 005034 461 QDLVQGNLLICSYSIRFVLGLSTIKQAFETAKNLSAAGIVFYMDPFV-----IGFQLNPTPMKMPGIIIPSPDDSKILL 534 (718)
Q Consensus 461 ~~~~~g~i~~~~~~~~~~~~~~~~~~~~~~~~~~ga~~vi~~~~~~~-----~~~~~~~~~~~~p~~~~~~~~~~~~l~ 534 (718)
....+++++++.| |.|.+..|...++++||.+.++.|+... -+.........||..++.. .++..+.
T Consensus 91 ~~kl~~~~~~v~R------GnC~Ft~Ka~~Aq~aGAsaLliin~~~d~~~~~~~~~~~~~dv~IPv~mi~~-~~~~~l~ 162 (541)
T KOG2442|consen 91 QSKLSGKVALVFR------GNCSFTEKAKLAQAAGASALLIINNKKDLLFMPCGNKETSLDVTIPVAMISY-SDGRDLN 162 (541)
T ss_pred CccccceeEEEec------ccceeehhhhhhhhcCceEEEEEcCchhhccCCCCCCCccccccceEEEEEh-hhHHHHH
Confidence 4567899999998 7899999999999999999999998542 1222334567789888854 4444444
No 73
>cd02121 PA_GCPII_like PA_GCPII_like: Protease-associated domain containing protein, glutamate carboxypeptidase II (GCPII)-like. This group contains various PA domain-containing proteins similar to GCPII including, GCPIII (NAALADase2) and NAALADase L. These proteins belong to the peptidase M28 family. GCPII is also known N-acetylated-alpha-linked acidic dipeptidase (NAALDase1), folate hydrolase or prostate-specific membrane antigen (PSMA). GCPII is found in various human tissues including prostate, small intestine, and the central nervous system. In the brain, GCPII is known as NAALDase1, it functions as a NAALDase hydrolyzing the neuropeptide N-acetyl-L-aspartyl-L-glutamate (alpha-NAAG), to release free glutamate. In the small intestine, GCPII releases the terminal glutamate from poly-gamma-glutamated folates. GCPII (PSMA) is a useful cancer marker; its expression is markedly increased in prostate cancer and in tumor-associated neovasculature. GCPIII hydrolyzes alpha-NAAG with a lower
Probab=80.69 E-value=2.8 Score=41.94 Aligned_cols=41 Identities=24% Similarity=0.314 Sum_probs=34.3
Q ss_pred cCCcCceEEEEEeecccccCcchHHHHHHHHHhCCCcEEEEEeCCCc
Q 005034 461 QDLVQGNLLICSYSIRFVLGLSTIKQAFETAKNLSAAGIVFYMDPFV 507 (718)
Q Consensus 461 ~~~~~g~i~~~~~~~~~~~~~~~~~~~~~~~~~~ga~~vi~~~~~~~ 507 (718)
..+++|||+++.++ .+...+|+.+|+..||.|+|+|++...
T Consensus 67 gvdv~GKIvLvr~G------~~~~~~Kv~~A~~~GA~gVIiy~Dp~d 107 (220)
T cd02121 67 GIDVKGKIVIARYG------GIFRGLKVKNAQLAGAVGVIIYSDPAD 107 (220)
T ss_pred CCCCCCeEEEEECC------CccHHHHHHHHHHcCCEEEEEEeCchh
Confidence 45789999999873 455578999999999999999998753
No 74
>KOG4628 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=60.98 E-value=20 Score=38.16 Aligned_cols=80 Identities=15% Similarity=0.209 Sum_probs=52.9
Q ss_pred cccCCCCCCc--cCCcCceEEEEEeecccccCcchHHHHHHHHHhCCCcEEEEEeCCCccCccc---CCCCCCCCeEEec
Q 005034 451 GECQDSSNFN--QDLVQGNLLICSYSIRFVLGLSTIKQAFETAKNLSAAGIVFYMDPFVIGFQL---NPTPMKMPGIIIP 525 (718)
Q Consensus 451 ~~c~~~~~~~--~~~~~g~i~~~~~~~~~~~~~~~~~~~~~~~~~~ga~~vi~~~~~~~~~~~~---~~~~~~~p~~~~~ 525 (718)
++|.+...+. .......++++.| +.|+|.+|+.+|+++|..++|+||+........ .+....++.+++
T Consensus 63 ~aC~~i~~~p~~~~~~~~~laLI~R------g~CsFe~Kv~~AQ~aGfkaaIVynn~~~~~lv~~~~~~~~v~i~~~~v- 135 (348)
T KOG4628|consen 63 NACNPITNFPEHSTRSTSFLALIRR------GGCSFEDKVLNAQRAGFKAAIVYNNVGSEDLVAMASNPSKVDIHIVFV- 135 (348)
T ss_pred cccCccccCccCCCCCcceEEEEEc------cCCchHHHHhhcccccCceEEEecCCCCchheeeccCCccceeEEEEE-
Confidence 4566443321 2344567788888 669999999999999999999999876433222 334455666655
Q ss_pred CcchHHHHHHHH
Q 005034 526 SPDDSKILLQYY 537 (718)
Q Consensus 526 ~~~~~~~l~~~~ 537 (718)
+...+..+..|.
T Consensus 136 s~~~ge~l~~~~ 147 (348)
T KOG4628|consen 136 SVFSGELLSSYA 147 (348)
T ss_pred eeehHHHHHHhh
Confidence 345556666654
No 75
>cd04821 PA_M28_1_2 PA_M28_1_2: Protease-associated (PA) domain, peptidase family M28, subfamily-1, subgroup 2. A subgroup of PA-domain containing proteins belonging to the peptidase family M28. Family M28 contains aminopeptidases and carboxypeptidases, and has co-catalytic zinc ions. The PA domain is an insert domain in a diverse fraction of proteases. The significance of the PA domain to many of the proteins in which it is inserted is undetermined. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate. Proteins into which the PA domain is inserted include the following members of the peptidase family M28: i) prostate-specific membrane antigen (PSMA), ii) yeast aminopeptidase Y, and ii) human TfR (transferrin receptor)1 and human TfR2. The proteins listed above belong to other subgroups; relatively litt
Probab=44.95 E-value=33 Score=32.39 Aligned_cols=49 Identities=14% Similarity=0.070 Sum_probs=34.0
Q ss_pred CCccCCcCceEEEEEeeccc---------ccC----cchHHHHHHHHHhCCCcEEEEEeCCC
Q 005034 458 NFNQDLVQGNLLICSYSIRF---------VLG----LSTIKQAFETAKNLSAAGIVFYMDPF 506 (718)
Q Consensus 458 ~~~~~~~~g~i~~~~~~~~~---------~~~----~~~~~~~~~~~~~~ga~~vi~~~~~~ 506 (718)
.+...+++|||+++..+..- ... -.+...|...+.+.||.|+|++.+..
T Consensus 42 Dy~g~DVkGKiVvvl~~~P~~~~~~~~~f~~~~~~~~~~~~~K~~~A~~~GA~gvi~v~~~~ 103 (157)
T cd04821 42 DYKGLDVKGKTVVILVNDPGFATPDSGLFNGKAMTYYGRWTYKYEEAARQGAAGALIVHETE 103 (157)
T ss_pred cccCCCcCCcEEEEEcCCCCcccccccccCcccccccccHHHHHHHHHHCCCeEEEEEeCCC
Confidence 35567899999998864221 000 01344688999999999999998754
No 76
>KOG3920 consensus Uncharacterized conserved protein, contains PA domain [General function prediction only]
Probab=39.63 E-value=43 Score=31.14 Aligned_cols=70 Identities=9% Similarity=0.078 Sum_probs=49.0
Q ss_pred cccccCCCCCCccCCcCceEEEEEeecccccCcchHHHHHHHHHhCCCcEEEEEeCCCccCcc---------cCCCCCCC
Q 005034 449 YVGECQDSSNFNQDLVQGNLLICSYSIRFVLGLSTIKQAFETAKNLSAAGIVFYMDPFVIGFQ---------LNPTPMKM 519 (718)
Q Consensus 449 ~~~~c~~~~~~~~~~~~g~i~~~~~~~~~~~~~~~~~~~~~~~~~~ga~~vi~~~~~~~~~~~---------~~~~~~~~ 519 (718)
+...|.... +.-...|.|.+++| |.|++..|..+++.+|+..+|+..+..+.... ..-....+
T Consensus 73 Pp~aC~elr--N~~f~~d~vaL~eR------GeCSFl~Ktl~~e~aGa~aiiitd~~~~~~sf~~YveMI~D~sq~~Ani 144 (193)
T KOG3920|consen 73 PPHACEELR--NEIFAPDSVALMER------GECSFLVKTLNGEKAGATAIIITDSQNYEYSFHQYVEMIPDESQDRANI 144 (193)
T ss_pred ChhHHHHHh--hcccCCCcEEEEec------CCceeeehhhhhhhcCceEEEEecCCCCchhHHHHHHhcCcccccccCC
Confidence 456676432 23456788999988 89999999999999999999998866543222 01233557
Q ss_pred CeEEecC
Q 005034 520 PGIIIPS 526 (718)
Q Consensus 520 p~~~~~~ 526 (718)
|.+++..
T Consensus 145 Pa~fllg 151 (193)
T KOG3920|consen 145 PAVFLLG 151 (193)
T ss_pred ceEEEec
Confidence 8777744
No 77
>PRK15019 CsdA-binding activator; Provisional
Probab=38.15 E-value=32 Score=32.06 Aligned_cols=32 Identities=16% Similarity=0.245 Sum_probs=27.5
Q ss_pred ccCchhhhhHHHHHHHHHHHHhCCCCCHHHHHH
Q 005034 627 MMSGTSMAAPHIAGLAALIKQKFPSFSPSAIAS 659 (718)
Q Consensus 627 ~~sGTSmAaP~VAG~aALl~q~~p~ls~~~ik~ 659 (718)
.+.|.| =|+.|-|.+|||.+.+-..+|+||.+
T Consensus 78 ~f~~dS-DA~IvkGl~alL~~~~~g~tp~eIl~ 109 (147)
T PRK15019 78 HFFGDS-EGRIVRGLLAVLLTAVEGKTAAELQA 109 (147)
T ss_pred EEEeeC-ccHHHHHHHHHHHHHHcCCCHHHHHh
Confidence 444555 57999999999999999999999976
No 78
>PF02845 CUE: CUE domain; InterPro: IPR003892 This domain may be involved in binding ubiquitin-conjugating enzymes (UBCs). CUE domains also occur in two proteins of the IL-1 signal transduction pathway, tollip and TAB2.; GO: 0005515 protein binding; PDB: 2EKF_A 1OTR_A 1P3Q_Q 1MN3_A 1WGL_A 2EJS_A 2DAE_A 2DHY_A 2DI0_A.
Probab=38.09 E-value=34 Score=24.24 Aligned_cols=24 Identities=17% Similarity=0.425 Sum_probs=19.0
Q ss_pred HHHHHHhCCCCCHHHHHHHHHhcc
Q 005034 642 AALIKQKFPSFSPSAIASALSTSA 665 (718)
Q Consensus 642 aALl~q~~p~ls~~~ik~~L~~TA 665 (718)
+--|++.||+++++.|+..|...-
T Consensus 5 v~~L~~mFP~~~~~~I~~~L~~~~ 28 (42)
T PF02845_consen 5 VQQLQEMFPDLDREVIEAVLQANN 28 (42)
T ss_dssp HHHHHHHSSSS-HHHHHHHHHHTT
T ss_pred HHHHHHHCCCCCHHHHHHHHHHcC
Confidence 345789999999999999996554
No 79
>TIGR03391 FeS_syn_CsdE cysteine desulfurase, sulfur acceptor subunit CsdE. Members of this protein family are CsdE, formerly called YgdK. This protein, found as a paralog to SufE in Escherichia coli, Yersinia pestis, Photorhabdus luminescens, and related species, works together and physically interacts with CsdA (a paralog of SufS). CsdA has cysteine desulfurase activity that is enhanced by this protein (CsdE), in which Cys-61 (numbered as in E. coli) is a sulfur acceptor site. This gene pair, although involved in FeS cluster biosynthesis, is not found next to other such genes as are its paralogs from the Suf or Isc systems.
Probab=37.59 E-value=34 Score=31.58 Aligned_cols=33 Identities=18% Similarity=0.297 Sum_probs=28.0
Q ss_pred ccCchhhhhHHHHHHHHHHHHhCCCCCHHHHHHH
Q 005034 627 MMSGTSMAAPHIAGLAALIKQKFPSFSPSAIASA 660 (718)
Q Consensus 627 ~~sGTSmAaP~VAG~aALl~q~~p~ls~~~ik~~ 660 (718)
.+.|.| =|+.|-|++|||++.+-..+|++|.+.
T Consensus 73 ~f~~dS-Da~IvkGl~alL~~~~~g~tp~eI~~~ 105 (138)
T TIGR03391 73 HFYGDS-EGRIVRGLLAVLLTAVEGKTPEQLLAQ 105 (138)
T ss_pred EEEecC-ccHHHHHHHHHHHHHHcCCCHHHHHHC
Confidence 355666 589999999999999999999999754
No 80
>PF08260 Kinin: Insect kinin peptide; InterPro: IPR013202 This entry represents neuropeptides that are the first members of the insect kinin-family isolated from the American cockroach. Their occurrence in the retrocerebral complex suggests a physiological role as a neurohormone. The C-terminal sequence Phe-X-Ser-Trp-Gly-NH2 characterised the peptides as members of the insect kinin family. Data suggest a possible involvement of insect kinins in water-balance by regulating the osmoregulation. Insect kinins also mediate visceral muscle contractile activity (myotropic activity) []. These peptides have lengths ranging from 6 to 14 amino acids [].
Probab=36.47 E-value=16 Score=16.35 Aligned_cols=6 Identities=17% Similarity=0.551 Sum_probs=4.0
Q ss_pred ccccCC
Q 005034 576 YYSARG 581 (718)
Q Consensus 576 ~fSs~G 581 (718)
.|+|||
T Consensus 3 afnswg 8 (8)
T PF08260_consen 3 AFNSWG 8 (8)
T ss_pred cccccC
Confidence 467776
No 81
>PRK09296 cysteine desufuration protein SufE; Provisional
Probab=34.84 E-value=35 Score=31.49 Aligned_cols=32 Identities=25% Similarity=0.451 Sum_probs=27.5
Q ss_pred ccCchhhhhHHHHHHHHHHHHhCCCCCHHHHHH
Q 005034 627 MMSGTSMAAPHIAGLAALIKQKFPSFSPSAIAS 659 (718)
Q Consensus 627 ~~sGTSmAaP~VAG~aALl~q~~p~ls~~~ik~ 659 (718)
.+.|.| =|+.|-|.+|||.+.+-..+|+||.+
T Consensus 68 ~f~~dS-Da~ivkGl~alL~~~~~g~tp~eIl~ 99 (138)
T PRK09296 68 ELQGDS-DAAIVKGLIAVVFILYQQMTPQDIVN 99 (138)
T ss_pred EEEEec-ccHHHHHHHHHHHHHHcCCCHHHHHh
Confidence 444556 58999999999999999999999875
No 82
>COG2166 sufE Cysteine desulfurase SufE subunit [Posttranslational modification, protein turnover, chaperones]
Probab=31.16 E-value=47 Score=30.75 Aligned_cols=32 Identities=22% Similarity=0.306 Sum_probs=26.0
Q ss_pred ccCchhhhhHHHHHHHHHHHHhCCCCCHHHHHH
Q 005034 627 MMSGTSMAAPHIAGLAALIKQKFPSFSPSAIAS 659 (718)
Q Consensus 627 ~~sGTSmAaP~VAG~aALl~q~~p~ls~~~ik~ 659 (718)
.+.|=|= |++|.|.+|++++.+-..+|++|.+
T Consensus 73 ~F~gdSd-A~ivrGL~aill~~~~G~t~~eI~~ 104 (144)
T COG2166 73 HFFGDSD-ARIVRGLLAILLAAYSGKTAAEILA 104 (144)
T ss_pred EEeccch-hHHHHHHHHHHHHHHcCCCHHHHHc
Confidence 3444443 6899999999999999999999864
No 83
>PF02657 SufE: Fe-S metabolism associated domain; InterPro: IPR003808 This entry represents the core domain of SufE and related proteins. This domain of SufE shows strong structural similarity to IscU, and the sulfur-acceptor site in SufE coincides with the location of the cysteine residues mediating Fe-S cluster assembly in IscU. Thus, a conserved core structure is implicated in mediating the interactions of both SufE and IscU with the mutually homologous cysteine desulfurase enzymes present in their respective operons [].; PDB: 1MZG_B 1WLO_A 3G0M_A 1NI7_A.
Probab=29.75 E-value=56 Score=29.56 Aligned_cols=33 Identities=24% Similarity=0.285 Sum_probs=26.4
Q ss_pred ccCchhhhhHHHHHHHHHHHHhCCCCCHHHHHHH
Q 005034 627 MMSGTSMAAPHIAGLAALIKQKFPSFSPSAIASA 660 (718)
Q Consensus 627 ~~sGTSmAaP~VAG~aALl~q~~p~ls~~~ik~~ 660 (718)
.+.|.|= |+.|-|++||+.+.+-..+|+||.+.
T Consensus 59 ~f~adSd-a~ivkGl~all~~~~~g~t~~eI~~~ 91 (125)
T PF02657_consen 59 HFRADSD-ARIVKGLLALLLEVLNGQTPEEILAF 91 (125)
T ss_dssp EEEEEES-SHHHHHHHHHHHHHTTT-BHHHHHHS
T ss_pred EEEecCc-cHHHHHHHHHHHHHHcCCCHHHHHhC
Confidence 4455554 67999999999999999999998764
No 84
>smart00546 CUE Domain that may be involved in binding ubiquitin-conjugating enzymes (UBCs). CUE domains also occur in two protein of the IL-1 signal transduction pathway, tollip and TAB2. Ponting (Biochem. J.) "Proteins of the Endoplasmic reticulum" (in press)
Probab=29.62 E-value=78 Score=22.43 Aligned_cols=25 Identities=20% Similarity=0.352 Sum_probs=21.2
Q ss_pred HHHHHHHhCCCCCHHHHHHHHHhcc
Q 005034 641 LAALIKQKFPSFSPSAIASALSTSA 665 (718)
Q Consensus 641 ~aALl~q~~p~ls~~~ik~~L~~TA 665 (718)
.+..|++.||+++...|+..|...-
T Consensus 5 ~v~~L~~mFP~l~~~~I~~~L~~~~ 29 (43)
T smart00546 5 ALHDLKDMFPNLDEEVIKAVLEANN 29 (43)
T ss_pred HHHHHHHHCCCCCHHHHHHHHHHcC
Confidence 4567899999999999999998544
No 85
>PF13940 Ldr_toxin: Toxin Ldr, type I toxin-antitoxin system
Probab=25.63 E-value=63 Score=21.72 Aligned_cols=13 Identities=54% Similarity=0.797 Sum_probs=10.9
Q ss_pred hhhHHHHHHHHHH
Q 005034 633 MAAPHIAGLAALI 645 (718)
Q Consensus 633 mAaP~VAG~aALl 645 (718)
.|+|.+||+++-+
T Consensus 14 LAAP~iagIi~s~ 26 (35)
T PF13940_consen 14 LAAPIIAGIIASL 26 (35)
T ss_pred hHhHHHHHHHHHH
Confidence 5899999998854
No 86
>PF04255 DUF433: Protein of unknown function (DUF433); InterPro: IPR007367 This is a family of uncharacterised proteins.; PDB: 2GA1_B.
Probab=25.42 E-value=66 Score=24.48 Aligned_cols=37 Identities=27% Similarity=0.471 Sum_probs=21.9
Q ss_pred cccCchhhhhHHHHHHH------HHHHHhCCCCCHHHHHHHHH
Q 005034 626 AMMSGTSMAAPHIAGLA------ALIKQKFPSFSPSAIASALS 662 (718)
Q Consensus 626 ~~~sGTSmAaP~VAG~a------ALl~q~~p~ls~~~ik~~L~ 662 (718)
-.+.||=+..=.|.... .-+.+.||+|+.++|+++|.
T Consensus 12 P~i~GTRI~v~~i~~~~~~G~s~eeI~~~yp~Lt~~~i~aAl~ 54 (56)
T PF04255_consen 12 PVIRGTRIPVRDILDLLAAGESPEEIAEDYPSLTLEDIRAALA 54 (56)
T ss_dssp -EETTSS-BHHHHHHHHHTT--HHHHHHHSTT--HHHHHHHHH
T ss_pred ceEcCceecHHHHHHHHHcCCCHHHHHHHCCCCCHHHHHHHHH
Confidence 34556666555554442 23466899999999999884
No 87
>PF02601 Exonuc_VII_L: Exonuclease VII, large subunit; InterPro: IPR020579 Exonuclease VII 3.1.11.6 from EC is composed of two nonidentical subunits; one large subunit and 4 small ones []. Exonuclease VII catalyses exonucleolytic cleavage in either 5'-3' or 3'-5' direction to yield 5'-phosphomononucleotides. The large subunit also contains the OB-fold domains (IPR004365 from INTERPRO) that bind to nucleic acids at the N terminus. This entry represents Exonuclease VII, large subunit, C-terminal. ; GO: 0008855 exodeoxyribonuclease VII activity
Probab=23.34 E-value=2.2e+02 Score=30.22 Aligned_cols=79 Identities=24% Similarity=0.187 Sum_probs=53.7
Q ss_pred ccCCceEEEEeecccCCCCCHHHHHHHHHHHHHCC----CCEEEEcCCCCCCCCCCCccccHHHHHHHHHHHCCCEEEEe
Q 005034 299 MAPRSHIAVYKALYKSFGGFAADVVAAIDQAAQDG----VDIISLSITPNRRPPGIATFFNPIDMALLSAAKAGIFVVQA 374 (718)
Q Consensus 299 vAp~A~i~~~kv~~~~~~~~~~~i~~ai~~a~~~g----~~ViN~S~G~~~~~~~~~~~~~~~~~a~~~a~~~GilvV~A 374 (718)
-.|.++++.+.+.-. +.....+|+.||+.+.+.+ +|||=+-=||++-.+=+.+....+. +...+..+.||.+
T Consensus 38 r~~~~~~~~~p~~vQ-G~~A~~~I~~al~~~~~~~~~~~~Dviii~RGGGs~eDL~~FN~e~va---rai~~~~~Pvisa 113 (319)
T PF02601_consen 38 RNPIVEIILYPASVQ-GEGAAASIVSALRKANEMGQADDFDVIIIIRGGGSIEDLWAFNDEEVA---RAIAASPIPVISA 113 (319)
T ss_pred hCCCcEEEEEecccc-ccchHHHHHHHHHHHHhccccccccEEEEecCCCChHHhcccChHHHH---HHHHhCCCCEEEe
Confidence 456677776666544 4477788999999998765 9999999998653221122223333 3445668999999
Q ss_pred cCCCCCC
Q 005034 375 AGNTGPS 381 (718)
Q Consensus 375 AGN~g~~ 381 (718)
-|=+-..
T Consensus 114 IGHe~D~ 120 (319)
T PF02601_consen 114 IGHETDF 120 (319)
T ss_pred cCCCCCc
Confidence 9988653
No 88
>COG1570 XseA Exonuclease VII, large subunit [DNA replication, recombination, and repair]
Probab=22.24 E-value=1.9e+02 Score=32.03 Aligned_cols=79 Identities=25% Similarity=0.251 Sum_probs=57.0
Q ss_pred ccCCceEEEEeecccCCCCCHHHHHHHHHHHHHCC-CCEEEEcCCCCCCCCCCCccccHHHHHHHHHHHCCCEEEEecCC
Q 005034 299 MAPRSHIAVYKALYKSFGGFAADVVAAIDQAAQDG-VDIISLSITPNRRPPGIATFFNPIDMALLSAAKAGIFVVQAAGN 377 (718)
Q Consensus 299 vAp~A~i~~~kv~~~~~~~~~~~i~~ai~~a~~~g-~~ViN~S~G~~~~~~~~~~~~~~~~~a~~~a~~~GilvV~AAGN 377 (718)
=.|.++++.+.+.-. +.+....|++||+.+-+.+ +|||=.-=|+++--+=+....+.+. +......+.||.|-|-
T Consensus 159 R~P~~~viv~pt~VQ-G~~A~~eIv~aI~~an~~~~~DvlIVaRGGGSiEDLW~FNdE~va---RAi~~s~iPvISAVGH 234 (440)
T COG1570 159 RFPSVEVIVYPTLVQ-GEGAAEEIVEAIERANQRGDVDVLIVARGGGSIEDLWAFNDEIVA---RAIAASRIPVISAVGH 234 (440)
T ss_pred hCCCCeEEEEecccc-CCCcHHHHHHHHHHhhccCCCCEEEEecCcchHHHHhccChHHHH---HHHHhCCCCeEeeccc
Confidence 468899999888765 5577788999999999887 9999999887653222222233333 3445668999999998
Q ss_pred CCCC
Q 005034 378 TGPS 381 (718)
Q Consensus 378 ~g~~ 381 (718)
+-..
T Consensus 235 EtD~ 238 (440)
T COG1570 235 ETDF 238 (440)
T ss_pred CCCc
Confidence 8653
Done!