Query         005034
Match_columns 718
No_of_seqs    356 out of 2460
Neff          8.5 
Searched_HMMs 29240
Date          Mon Mar 25 13:22:40 2013
Command       hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/005034.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/005034hhsearch_pdb -cpu 12 -v 0 

 No Hit                             Prob E-value P-value  Score    SS Cols Query HMM  Template HMM
  1 3i6s_A Subtilisin-like proteas 100.0 1.3E-78 4.4E-83  696.2  38.5  493  163-717     2-504 (649)
  2 3vta_A Cucumisin; subtilisin-l 100.0   9E-74 3.1E-78  658.3  34.9  483  163-717     2-484 (621)
  3 1xf1_A C5A peptidase, SCP; hyd 100.0 8.5E-63 2.9E-67  589.4  34.0  442  168-714     3-483 (926)
  4 3afg_A Subtilisin-like serine  100.0 2.3E-59 7.9E-64  528.4  33.7  339  117-710    59-419 (539)
  5 2z2z_A TK-subtilisin precursor 100.0 2.9E-58   1E-62  503.3  18.7  320  116-709    22-392 (395)
  6 3t41_A Epidermin leader peptid 100.0 9.2E-55 3.2E-59  487.9  28.8  338  116-711    64-467 (471)
  7 1r6v_A Subtilisin-like serine  100.0 3.8E-54 1.3E-58  491.1  28.1  339  117-714    52-444 (671)
  8 2p4e_P Proprotein convertase s 100.0 1.8E-56 6.1E-61  506.6   8.2  340  117-708   108-465 (692)
  9 1dbi_A AK.1 serine protease; h 100.0 2.6E-52   9E-57  434.7  24.8  257  175-708    23-279 (280)
 10 1thm_A Thermitase; hydrolase(s 100.0 2.7E-52 9.4E-57  434.6  21.5  261  169-708    18-278 (279)
 11 1gci_A Subtilisin; hydrolase,  100.0 2.7E-52 9.3E-57  431.8  20.7  254  175-708    16-269 (269)
 12 1r0r_E Subtilisin carlsberg; h 100.0 2.2E-52 7.7E-57  434.1  18.8  255  175-708    16-274 (274)
 13 1to2_E Subtilisin BPN'; serine 100.0 1.3E-51 4.5E-56  429.7  23.0  257  175-709    16-276 (281)
 14 4h6x_A Thiazoline oxidase/subt 100.0   1E-53 3.5E-58  460.8   6.6  304  170-708    19-337 (357)
 15 1y9z_A Alkaline serine proteas 100.0 3.8E-51 1.3E-55  453.5  25.7  370  185-709    20-427 (441)
 16 3zxy_A Subtilisin-like protein 100.0 3.7E-52 1.3E-56  435.1  14.3  266  183-708     3-274 (282)
 17 2x8j_A Intracellular subtilisi 100.0 1.3E-51 4.5E-56  438.7  17.1  263  175-709    33-311 (327)
 18 2z30_A TK-subtilisin; thermoco 100.0 3.1E-51 1.1E-55  435.3  17.2  268  169-709    15-317 (320)
 19 2ixt_A 36KDA protease; serine  100.0 2.7E-50 9.3E-55  427.0  24.2  286  175-704    18-310 (310)
 20 4h6w_A N-terminal cyanobactin  100.0   2E-51 6.9E-56  435.1  14.5  275  169-708     8-287 (306)
 21 1wmd_A Protease; alpha-beta hy 100.0 1.3E-49 4.5E-54  440.7  20.0  295  168-710     7-319 (434)
 22 2iy9_A SUBA; toxin, shiga, pla 100.0 9.4E-50 3.2E-54  429.4  17.7  273  169-709    30-329 (347)
 23 3lpc_A APRB2; protease, subtil 100.0 2.7E-49 9.3E-54  424.9  16.6  300  175-710    24-338 (340)
 24 1sh7_A Extracellular subtilisi 100.0 1.2E-47   4E-52  399.9  24.7  235  175-670    21-258 (284)
 25 4dzt_A Aqualysin-1, aqualysin- 100.0 7.6E-47 2.6E-51  393.5  22.6  236  175-671    23-261 (276)
 26 2pwa_A Proteinase K; structure 100.0   2E-47 6.8E-52  397.2  17.9  225  184-669    28-260 (279)
 27 2b6n_A Proteinase K; S binding 100.0   9E-47 3.1E-51  392.8  22.3  236  175-669    23-261 (278)
 28 1p8j_A Furin precursor; prohor 100.0 6.8E-47 2.3E-51  422.5  18.3  296  169-709    25-330 (471)
 29 2id4_A Kexin; KEX2, kexin, fur 100.0 3.6E-46 1.2E-50  419.3  18.7  284  175-709    46-342 (503)
 30 2qtw_B Proprotein convertase s 100.0 4.3E-46 1.5E-50  411.4  18.8  284  183-710    22-315 (546)
 31 3f7m_A Alkaline serine proteas 100.0   7E-46 2.4E-50  386.8  18.1  227  184-671    29-263 (279)
 32 2oxa_A Extracellular serine pr 100.0 2.1E-45 7.2E-50  422.4  17.8  322  175-709    62-425 (600)
 33 3lxu_X Tripeptidyl-peptidase 2 100.0 4.4E-43 1.5E-47  415.7  23.5  244  265-712   267-526 (1354)
 34 3hjr_A Extracellular serine pr 100.0 5.6E-43 1.9E-47  403.9  22.0  155  175-380    62-221 (600)
 35 1t1e_A Kumamolisin; proenzyme,  99.9 3.3E-26 1.1E-30  257.6   5.7  100  295-400   273-383 (552)
 36 1ga6_A Serine-carboxyl protein  99.9 6.7E-23 2.3E-27  219.9   9.4  102  298-400    91-206 (372)
 37 3edy_A Tripeptidyl-peptidase 1  99.1 1.5E-10   5E-15  129.4  12.5  101  297-400   262-374 (544)
 38 3cnq_P Subtilisin BPN'; unclea  98.5 3.7E-07 1.2E-11   75.1   8.4   48  115-163    31-78  (80)
 39 2w2n_P Proprotein convertase s  98.3 1.8E-06   6E-11   75.9   8.1   45  116-160    69-113 (114)
 40 2qtw_A Proprotein convertase s  98.1 6.2E-06 2.1E-10   73.4   8.1   45  116-160    79-123 (124)
 41 1v5i_B POIA1, IA-1=serine prot  98.0 1.3E-05 4.3E-10   65.0   7.3   44  117-160    29-75  (76)
 42 3icu_A E3 ubiquitin-protein li  97.2  0.0018 6.1E-08   61.8  10.3   85  449-540    82-176 (194)
 43 2z30_B TK-subtilisin; thermoco  96.5  0.0028 9.6E-08   49.3   4.5   48  112-160    17-64  (65)
 44 1y9z_A Alkaline serine proteas  92.6    0.26   9E-06   53.6   8.7   39  548-611   172-210 (441)
 45 3lxu_X Tripeptidyl-peptidase 2  89.7    0.23   8E-06   60.2   4.9   25  183-207    32-56  (1354)
 46 2ek8_A Aminopeptidase; metallo  88.7     1.3 4.3E-05   47.8   9.5   73  458-537   107-181 (421)
 47 3fed_A Glutamate carboxypeptid  70.8     3.5 0.00012   47.3   5.0   38  462-505   151-188 (707)
 48 3kas_A Transferrin receptor pr  68.8       4 0.00014   46.2   4.9   39  462-506   128-166 (640)
 49 3iib_A Peptidase M28; YP_92679  55.6      31   0.001   37.1   8.8   79  461-540   124-216 (444)
 50 1wgl_A TOLL-interacting protei  36.8      14 0.00047   27.6   1.5   31  638-668     9-39  (59)
 51 1ni7_A ER75, hypothetical prot  34.5      30   0.001   31.3   3.7   33  627-660    78-110 (155)
 52 3g0m_A Cysteine desulfuration   30.3      28 0.00096   31.0   2.7   33  626-659    70-102 (141)

No 1  
>3i6s_A Subtilisin-like protease; PA-domain, FN3-domain, hydrolase; HET: NAG FUC; 2.50A {Solanum lycopersicum} PDB: 3i74_A*
Probab=100.00  E-value=1.3e-78  Score=696.17  Aligned_cols=493  Identities=35%  Similarity=0.553  Sum_probs=415.4

Q ss_pred             CCCCCccCCC--cccccccCCCCCCCCCcEEEEEccccCCCCCCCcCCCCCCCCCCCCCCCccccccCCCCCCCCCceee
Q 005034          163 THTPQFLGLP--QGAWIQEGGYETAGEGVVIGFIDTGIDPTHPSFADDASEHSYPVPSHFSGICEVTRDFPSGSCNRKLI  240 (718)
Q Consensus       163 ~~~~~~~~~~--~~~w~~~~~~~~~G~gv~VaVIDtGid~~Hp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~  240 (718)
                      ++++++++++  ..+|..    +.+|+||+|||||||||++||+|.+...   .+++..|++.|+.+.+|....||+|++
T Consensus         2 t~s~~flgl~~~~~~w~~----~~~G~gViVaViDTGId~~Hp~f~d~g~---~p~p~~wkg~c~~g~~f~~~~cN~kii   74 (649)
T 3i6s_A            2 THTSDFLKLNPSSGLWPA----SGLGQDVIVAVLDSGIWPESASFQDDGM---PEIPKRWKGICKPGTQFNASMCNRKLI   74 (649)
T ss_dssp             CSHHHHTTCCSSSSHHHH----HGGGTTCEEEEEESCBCTTSGGGCCTTC---CCCCTTCCCCBCCBTTBCTTSCCSSEE
T ss_pred             CCChHHcCCCCchhhHhc----cCCCCCCEEEEEccCCCCCChhhccCCC---CCCccccccccccCcccccccccccee
Confidence            4566777876  347887    6899999999999999999999999865   678899999999999999999999999


Q ss_pred             eeeecchhhhhcCccCCCCCCCCCCCCCCCccccccccccCCCCCccccccccCccccccCCceEEEEeecccCCCCCHH
Q 005034          241 GARHFAASAITRGIFNSSQDYASPFDGDGHGSHTASVAAGNHGIPVVVTGHHFGNASGMAPRSHIAVYKALYKSFGGFAA  320 (718)
Q Consensus       241 ~~~~~~~~~~~~~~~~~~~~~~~~~d~~gHGThVAGiiag~~~~~~~~~g~~~~~~~GvAp~A~i~~~kv~~~~~~~~~~  320 (718)
                      +.++|..+..... .+...+..++.|.+||||||||||+|+.+++....|...+.+.||||+|+|+.+|+++. .++..+
T Consensus        75 g~~~f~~~~~~~~-~~~~~~~~~~~D~~GHGThVAgiiag~~~~~~~~~G~~~g~~~GvAP~A~l~~~kv~~~-~g~~~~  152 (649)
T 3i6s_A           75 GANYFNKGILAND-PTVNITMNSARDTDGHGTHCASITAGNFAKGVSHFGYAPGTARGVAPRARLAVYKFSFN-EGTFTS  152 (649)
T ss_dssp             EEEECCHHHHHHC-TTCCCTTCSSBCSSSHHHHHHHHHHCCCEEEEEETTEEEEEECCSSTTCEEEEEECEET-TEECHH
T ss_pred             eeEeccCcccccc-cccccCCCCCCCCCCcHHHHHHHHhCCCCcCccccccccCceeEECCCCEEEEEeccCC-CCCCHH
Confidence            9999998765443 34445566788999999999999999987766666666677899999999999999987 348899


Q ss_pred             HHHHHHHHHHHCCCCEEEEcCCCCCCCCCCCccccHHHHHHHHHHHCCCEEEEecCCCCCCCCCCCCCCCceEEEeeecc
Q 005034          321 DVVAAIDQAAQDGVDIISLSITPNRRPPGIATFFNPIDMALLSAAKAGIFVVQAAGNTGPSPKSMSSFSPWIFTVGAASH  400 (718)
Q Consensus       321 ~i~~ai~~a~~~g~~ViN~S~G~~~~~~~~~~~~~~~~~a~~~a~~~GilvV~AAGN~g~~~~~~~~~~~~vitVgA~~~  400 (718)
                      ++++||+||+++|++|||||||....    ..+.+.+..++..|.++|++||+||||+|....++++.+||+|+|||++.
T Consensus       153 ~i~~Ai~~A~~~gvdVIn~SlG~~~~----~~~~~~i~~a~~~A~~~Gi~vV~AAGN~G~~~~t~~~~ap~vitVgAst~  228 (649)
T 3i6s_A          153 DLIAAMDQAVADGVDMISISYGYRFI----PLYEDAISIASFGAMMKGVLVSASAGNRGPGIGSLNNGSPWILCVASGHT  228 (649)
T ss_dssp             HHHHHHHHHHHTTCSEEEECCCCCSC----CGGGCHHHHHHHHHHHTTCEEEEECCSCTTSTTCCSCCCTTSEEEEEEEC
T ss_pred             HHHHHHHHHHHcCCCEEEeCCccCCc----ccchhHHHHHHHHHHhCCcEEEEeCCCCCCCCCccCCCCCceEEEeeeec
Confidence            99999999999999999999998632    44678899999999999999999999999999999999999999999999


Q ss_pred             CCceeeeEEeCCCceEeeeccCCCC--CceEEEEEcccccCCCCcccCCccccccCCCCCCccCCc--CceEEEEEeecc
Q 005034          401 DRIYTNSIILGNSLTISGVGLAPGT--DKMYTLISALHALNNNTTTTDDMYVGECQDSSNFNQDLV--QGNLLICSYSIR  476 (718)
Q Consensus       401 ~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~--~g~i~~~~~~~~  476 (718)
                      ++.|+..+.+++++++.+..+....  ...||++++.             ....|.. ..++...+  +|||++|.+   
T Consensus       229 dr~f~~~~~lgng~~~~g~sl~~~~~~~~~~plv~~~-------------~~~~C~~-~~l~~~~vdl~GkIvlc~~---  291 (649)
T 3i6s_A          229 DRTFAGTLTLGNGLKIRGWSLFPARAFVRDSPVIYNK-------------TLSDCSS-EELLSQVENPENTIVICDD---  291 (649)
T ss_dssp             SCEEEEEEEETTSCEEEEECCCSSCBCEEEEEEECCT-------------TTTTCCC-HHHHTTSSSGGGCEEEECC---
T ss_pred             ccceeeEEEeCCCcEEeeeecccCcccCcceeeEecc-------------ccccccc-ccccccccccCCcEEEEeC---
Confidence            9999999999999999999988765  6678988754             2456763 33555556  999999998   


Q ss_pred             cccCcchHHHHHHHHHhCCCcEEEEEeCCCccCcccCCCCCCCCeEEecCcchHHHHHHHHhccCCCccccceeeeecee
Q 005034          477 FVLGLSTIKQAFETAKNLSAAGIVFYMDPFVIGFQLNPTPMKMPGIIIPSPDDSKILLQYYNSSLERDEVTKKIIKFGAV  556 (718)
Q Consensus       477 ~~~~~~~~~~~~~~~~~~ga~~vi~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~  556 (718)
                         +.+.+.++..+++.+|+.|+|++++.    .........+|.+++ ...++..|+.|+++....            +
T Consensus       292 ---g~~~~~~k~~~~~~~Ga~g~i~~n~~----~~~~~~~~~~P~~~v-~~~~g~~i~~yi~s~~~~------------~  351 (649)
T 3i6s_A          292 ---NGDFSDQMRIITRARLKAAIFISEDP----GVFRSATFPNPGVVV-NKKEGKQVINYVKNSVTP------------T  351 (649)
T ss_dssp             ---CSCHHHHHHHHHHHTCSEEEEECCCG----GGGGCCCCCSCEEEE-CHHHHHHHHHHHHTCSSC------------E
T ss_pred             ---CCccHHHHHHHHHhcCceEEEEecCc----cccccccCcCCEEEE-cHHHHHHHHHHHhcCCCc------------e
Confidence               57789999999999999999999987    233455678899887 478899999999886532            2


Q ss_pred             EEEecccccccCCCCCceeccccCCCCCCCCCCCCCCCCCCceeccCCceeecccCCCCCCccc----cCccccccCchh
Q 005034          557 ACILGGLKANFSNSAPKIMYYSARGPDPEDSFLDDADIMKPNLVAPGNSIWAAWSSLGTDSVEF----QGESFAMMSGTS  632 (718)
Q Consensus       557 ~~~~~~~~~~~~~~~~~~a~fSs~Gpt~~~~~~~~~g~~KPDI~APG~~I~Sa~~~~~~~~~~~----~~~~y~~~sGTS  632 (718)
                      .++....+.......+.+++||||||+.+     .++++||||+|||++|+++++.........    ....|..+||||
T Consensus       352 a~i~~~~t~~~~~~~~~va~FSSrGP~~~-----~~~ilKPDI~APG~~Ilsa~~~~~~~~~~~~d~~~~~~y~~~SGTS  426 (649)
T 3i6s_A          352 ATITFQETYLDTKPAPVVAASSARGPSRS-----YLGISKPDILAPGVLILAAYPPNVFATSIGTNILLSTDYILESGTS  426 (649)
T ss_dssp             EEEEEEEEECCCSSCCEECTTSCCSSCTT-----CTTSCSCCEEEECSSEEEECCTTSCCEEETTTEEECCSEEEECSHH
T ss_pred             EEEeecceeeccCCCCcccccCCCCCCCC-----CCCccCCeEEeCCCCeEeecCCCCCccccccccccccceecccccc
Confidence            33333333334566789999999999985     468999999999999999997643321110    225899999999


Q ss_pred             hhhHHHHHHHHHHHHhCCCCCHHHHHHHHHhcccccccCCCccccccccCCCCCCCCCCCCCccccccccccccCCCCee
Q 005034          633 MAAPHIAGLAALIKQKFPSFSPSAIASALSTSATLYDKNGGPIMAQRAYAKPDENQSPATPFDMGSGFVNATASLDPGLV  712 (718)
Q Consensus       633 mAaP~VAG~aALl~q~~p~ls~~~ik~~L~~TA~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~G~vn~~~Al~~~l~  712 (718)
                      ||||||||++|||+|+||+|+|++||++||+||.+++..+.|+.+..       ...++.++.||+|+||+.+|++++||
T Consensus       427 MAaPhVAGvaALlks~~P~~Spa~IksaLmtTA~~~~~~g~~i~~~~-------~~~~a~~~~~GaG~vn~~~A~~pGLv  499 (649)
T 3i6s_A          427 MAAPHAAGIAAMLKAAHPEWSPSAIRSAMMTTADPLDNTRKPIKDSD-------NNKAATPLDMGAGHVDPNRALDPGLV  499 (649)
T ss_dssp             HHHHHHHHHHHHHHHHSTTCCHHHHHHHHHHTCBCBCTTSSBCEETT-------TSSBCCHHHHTTCBCCHHHHTCCSEE
T ss_pred             cccHHHHHHHHHHHHhCCCCCHHHHHHHHhcccccccCCCCcccccc-------cCCcCCcCCCCeeeeCHHHhcCcccc
Confidence            99999999999999999999999999999999999999888887642       35677889999999999999999999


Q ss_pred             eeccC
Q 005034          713 FDASK  717 (718)
Q Consensus       713 ~~~~~  717 (718)
                      ||.+.
T Consensus       500 yd~~~  504 (649)
T 3i6s_A          500 YDATP  504 (649)
T ss_dssp             CCCCH
T ss_pred             ccCCc
Confidence            99863


No 2  
>3vta_A Cucumisin; subtilisin-like fold, serine protease, hydrolase; HET: DFP NAG FUC BMA MAN; 2.75A {Cucumis melo}
Probab=100.00  E-value=9e-74  Score=658.34  Aligned_cols=483  Identities=34%  Similarity=0.562  Sum_probs=391.5

Q ss_pred             CCCCCccCCCcccccccCCCCCCCCCcEEEEEccccCCCCCCCcCCCCCCCCCCCCCCCccccccCCCCCCCCCceeeee
Q 005034          163 THTPQFLGLPQGAWIQEGGYETAGEGVVIGFIDTGIDPTHPSFADDASEHSYPVPSHFSGICEVTRDFPSGSCNRKLIGA  242 (718)
Q Consensus       163 ~~~~~~~~~~~~~w~~~~~~~~~G~gv~VaVIDtGid~~Hp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~  242 (718)
                      +++++|+++++..|..    ..+|+||+|||||||||++||+|.+...   .+++..|++.|+.+.+|   .||+|+++.
T Consensus         2 t~s~~flGl~~~~~~~----~~~G~gViVgViDTGId~~Hp~f~d~g~---~~~~~~w~g~~~~~~~~---~~n~k~ig~   71 (621)
T 3vta_A            2 TRSWDFLGFPLTVPRR----SQVESNIVVGVLDTGIWPESPSFDDEGF---SPPPPKWKGTCETSNNF---RCNRKIIGA   71 (621)
T ss_dssp             CSHHHHTTCCTTCCCC----HHHHTTCEEEEEESCBCTTSGGGCCTTC---CCCCTTCCCCBCCSSSC---CCCSSEEEE
T ss_pred             CCChhHcCCCcccccc----CCCCCCCEEEEEecCCCCCChhhcCCCC---CCcccccccccccCCCc---ccCcceeee
Confidence            4667889998877766    5789999999999999999999998765   77888999999998877   499999999


Q ss_pred             eecchhhhhcCccCCCCCCCCCCCCCCCccccccccccCCCCCccccccccCccccccCCceEEEEeecccCCCCCHHHH
Q 005034          243 RHFAASAITRGIFNSSQDYASPFDGDGHGSHTASVAAGNHGIPVVVTGHHFGNASGMAPRSHIAVYKALYKSFGGFAADV  322 (718)
Q Consensus       243 ~~~~~~~~~~~~~~~~~~~~~~~d~~gHGThVAGiiag~~~~~~~~~g~~~~~~~GvAp~A~i~~~kv~~~~~~~~~~~i  322 (718)
                      ++|..+..     ....+...+.|.+||||||||||||+........|...+.++||||+|+|+++|++.. .++..+++
T Consensus        72 ~~~~~~~~-----~~~~~~~~p~D~~GHGTHvAgi~AG~~~~~~~~~g~~~g~~~GvAP~A~l~~~kv~~~-~g~~~~di  145 (621)
T 3vta_A           72 RSYHIGRP-----ISPGDVNGPRDTNGHGTHTASTAAGGLVSQANLYGLGLGTARGGVPLARIAAYKVCWN-DGCSDTDI  145 (621)
T ss_dssp             EECCCSSS-----CCTTCCSSSBCSSSHHHHHHHHHHCCCEEEEEETTEEEEEECCSCTTSEEEEEECEET-TEECHHHH
T ss_pred             eecccCCc-----cCCCCCCCCCCCCcCHHHHHHHHhCcCCCCccccccccccEEEECCCCEEEEEEeecC-CCCCHHHH
Confidence            99976521     1223445678999999999999999876665555666667899999999999999987 56788999


Q ss_pred             HHHHHHHHHCCCCEEEEcCCCCCCCCCCCccccHHHHHHHHHHHCCCEEEEecCCCCCCCCCCCCCCCceEEEeeeccCC
Q 005034          323 VAAIDQAAQDGVDIISLSITPNRRPPGIATFFNPIDMALLSAAKAGIFVVQAAGNTGPSPKSMSSFSPWIFTVGAASHDR  402 (718)
Q Consensus       323 ~~ai~~a~~~g~~ViN~S~G~~~~~~~~~~~~~~~~~a~~~a~~~GilvV~AAGN~g~~~~~~~~~~~~vitVgA~~~~~  402 (718)
                      ++||+||+++|++|||||||+..+.   ..+.+.+..++..+.++||++|+||||+|....++++.+||+++|++.+.++
T Consensus       146 ~~a~~~a~~~g~dVin~SlG~~~~~---~~~~~~~~~~~~~a~~~Gi~vv~aAGN~g~~~~t~~~~a~~~~~v~ast~d~  222 (621)
T 3vta_A          146 LAAYDDAIADGVDIISLSVGGANPR---HYFVDAIAIGSFHAVERGILTSNSAGNGGPNFFTTASLSPWLLSVAASTMDR  222 (621)
T ss_dssp             HHHHHHHHHHTCSEEEECCCCCCGG---GGGGCTHHHHHHHHHTTTCEEEEECCSCCSSTTCCCCCCTTSEEEEEECCSE
T ss_pred             HHHHHHHHHhCCCEEEecCCCCCCC---CcCCcHHHHHHHHHHHCCCEEEEeCCCCCCCCcccCCCCCCceeEEEeeccc
Confidence            9999999999999999999986543   3456788899999999999999999999999999999999999999999999


Q ss_pred             ceeeeEEeCCCceEeeeccCCCCCceEEEEEcccccCCCCcccCCccccccCCCCCCccCCcCceEEEEEeecccccCcc
Q 005034          403 IYTNSIILGNSLTISGVGLAPGTDKMYTLISALHALNNNTTTTDDMYVGECQDSSNFNQDLVQGNLLICSYSIRFVLGLS  482 (718)
Q Consensus       403 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~g~i~~~~~~~~~~~~~~  482 (718)
                      .+......+++..+.+..+.......++++...........   ......|. ...++...++|+|++|.+.        
T Consensus       223 ~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~-~~~~~~~~v~gkivl~~~~--------  290 (621)
T 3vta_A          223 KFVTQVQIGNGQSFQGVSINTFDNQYYPLVSGRDIPNTGFD---KSTSRFCT-DKSVNPNLLKGKIVVCEAS--------  290 (621)
T ss_dssp             EEEEEEEETTSCEEEEBCCCCSCCEEECEEETTTSCCTTCC---HHHHTTTC-TTCSCGGGTTTSEEECSSC--------
T ss_pred             cceeeEEeccCceeeeeecccCCCccccccccccccccccc---cccccccc-ccccccccccceEEEEecC--------
Confidence            99999999999999999988777788888877654432221   12234454 4567778899999999763        


Q ss_pred             hHHHHHHHHHhCCCcEEEEEeCCCccCcccCCCCCCCCeEEecCcchHHHHHHHHhccCCCccccceeeeeceeEEEecc
Q 005034          483 TIKQAFETAKNLSAAGIVFYMDPFVIGFQLNPTPMKMPGIIIPSPDDSKILLQYYNSSLERDEVTKKIIKFGAVACILGG  562 (718)
Q Consensus       483 ~~~~~~~~~~~~ga~~vi~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  562 (718)
                       +..+.......|+.+++++++...     ....+.+|...+ ...++..+..|........            ..+...
T Consensus       291 -~~~~~~~~~~~Ga~gvi~~~~~~~-----~~~~~~lP~~~v-~~~~g~~i~~~~~~~~~~~------------a~~~~~  351 (621)
T 3vta_A          291 -FGPHEFFKSLDGAAGVLMTSNTRD-----YADSYPLPSSVL-DPNDLLATLRYIYSIRSPG------------ATIFKS  351 (621)
T ss_dssp             -CCHHHHHHHHTTCSEEEEECSCCS-----SCCCCSSSEEEE-CHHHHHHHHHHHHHHSSCC------------EEECCC
T ss_pred             -CChhHHhhhhcceeEEEEEecCCC-----cccccccceEEE-CHHHHHHHHHHHhccCCcc------------eEEecc
Confidence             224456677889999999987642     234566888776 5677888888887654322            111111


Q ss_pred             cccccCCCCCceeccccCCCCCCCCCCCCCCCCCCceeccCCceeecccCCCCCCccccCccccccCchhhhhHHHHHHH
Q 005034          563 LKANFSNSAPKIMYYSARGPDPEDSFLDDADIMKPNLVAPGNSIWAAWSSLGTDSVEFQGESFAMMSGTSMAAPHIAGLA  642 (718)
Q Consensus       563 ~~~~~~~~~~~~a~fSs~Gpt~~~~~~~~~g~~KPDI~APG~~I~Sa~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~a  642 (718)
                      . .......+.++.||||||+..     .++++||||+|||++|+|+++..........+..|..|||||||||||||++
T Consensus       352 ~-~~~~~~~~~va~FSSrGP~~~-----~~~ilKPDI~APG~~Ilsa~~~~~~~~~~~~~~~y~~~SGTSMAaPhVAGva  425 (621)
T 3vta_A          352 T-TILNASAPVVVSFSSRGPNRA-----TKDVIKPDISGPGVEILAAWPSVAPVGGIRRNTLFNIISGTSMSCPHITGIA  425 (621)
T ss_dssp             E-EEECTTCCCBCTTSCCCSCTT-----CTTSCSCCEEEECSSEEEECCSSSCBTTBCCCCSEEEECSHHHHHHHHHHHH
T ss_pred             e-EeccCCCCceeeecCCCCCCC-----CCCeeccccccCCcceEeecCccccccCcCCCCcceEecCccccchhhhhHH
Confidence            1 123455678999999999874     3579999999999999999986554333335668999999999999999999


Q ss_pred             HHHHHhCCCCCHHHHHHHHHhcccccccCCCccccccccCCCCCCCCCCCCCccccccccccccCCCCeeeeccC
Q 005034          643 ALIKQKFPSFSPSAIASALSTSATLYDKNGGPIMAQRAYAKPDENQSPATPFDMGSGFVNATASLDPGLVFDASK  717 (718)
Q Consensus       643 ALl~q~~p~ls~~~ik~~L~~TA~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~G~vn~~~Al~~~l~~~~~~  717 (718)
                      |||||+||+|+|++||++||+||++++..+.                ++.++.||+|+||+.+|++++||||++.
T Consensus       426 ALl~q~~P~~spa~IksaLmtTA~~~~~~~~----------------~~~~~~~GaG~v~~~~A~~pGLvyd~~~  484 (621)
T 3vta_A          426 TYVKTYNPTWSPAAIKSALMTTASPMNARFN----------------PQAEFAYGSGHVNPLKAVRPGLVYDANE  484 (621)
T ss_dssp             HHHHHHCTTCCHHHHHHHHHHTCBCCCTTTC----------------TTTHHHHTTCBCCHHHHSCCSEECCCCG
T ss_pred             HHHHHHCCCCCHHHHHHHHHhcCCcccccCC----------------CCCchhcCCCccCHHHhcCCCeEeeccc
Confidence            9999999999999999999999998865544                4557889999999999999999999864


No 3  
>1xf1_A C5A peptidase, SCP; hydrolase; HET: CIT; 1.90A {Streptococcus pyogenes} PDB: 3eif_A*
Probab=100.00  E-value=8.5e-63  Score=589.42  Aligned_cols=442  Identities=21%  Similarity=0.276  Sum_probs=330.3

Q ss_pred             ccCCCcccccccCCCCCCCCCcEEEEEccccCCCCCCCcCCCCCCCCCCCCCCCcccccc----------CCCCCCCCCc
Q 005034          168 FLGLPQGAWIQEGGYETAGEGVVIGFIDTGIDPTHPSFADDASEHSYPVPSHFSGICEVT----------RDFPSGSCNR  237 (718)
Q Consensus       168 ~~~~~~~~w~~~~~~~~~G~gv~VaVIDtGid~~Hp~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~~~~~~  237 (718)
                      .++++. +|..    +++|+||+|||||||||++||+|.....         |++.|..+          ......+||+
T Consensus         3 ~i~~~~-~w~~----~~~G~GV~VaVIDTGId~~Hp~f~~~~~---------~~~~~~~~~~~~~~~~~~g~~~g~~~n~   68 (926)
T 1xf1_A            3 PSQVKT-LQEK----AGKGAGTVVAVIDAGFDKNHEAWRLTDK---------TKARYQSKEDLEKAKKEHGITYGEWVND   68 (926)
T ss_dssp             TTCCHH-HHHH----HCSCTTCEEEEEESCCTTCCCCCSCCSC---------CCSSCCHHHHHHHHHHTTTCCCCBCCSS
T ss_pred             ccccHH-HHhc----cCCCCCcEEEEEecCCCCCCHhHcCCCC---------CcccccchhhhcccccccCcccccccCc
Confidence            455555 8877    6899999999999999999999996432         33333221          1123347999


Q ss_pred             eeeeeeecchhhhhcCccCCCCCCCCCCCCCCCccccccccccCCCCCccccccccCccccccCCceEEEEeecccCCC-
Q 005034          238 KLIGARHFAASAITRGIFNSSQDYASPFDGDGHGSHTASVAAGNHGIPVVVTGHHFGNASGMAPRSHIAVYKALYKSFG-  316 (718)
Q Consensus       238 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~d~~gHGThVAGiiag~~~~~~~~~g~~~~~~~GvAp~A~i~~~kv~~~~~~-  316 (718)
                      |+++.++|..+             ....|..||||||||||+|+......    ..+++.||||+|+|+++|++...+. 
T Consensus        69 Kii~~~~~~~~-------------~~~~D~~gHGThVAgiiAg~~~~~~~----~~~~~~GvAP~A~l~~~kv~~~~g~~  131 (926)
T 1xf1_A           69 KVAYYHDYSKD-------------GKTAVDQEHGTHVSGILSGNAPSETK----EPYRLEGAMPEAQLLLMRVEIVNGLA  131 (926)
T ss_dssp             SCCEEEESCCC-------------SCCCCSSTTTTHHHHSSCCCCCCCCS----CSCCTTTTCTTSEEEEEECCCCSCHH
T ss_pred             ccceeeccccC-------------CCCCCCCCcHHHHHHHHhCCCccCcc----cCCceEEECCCCEEEEEEeecCCCCC
Confidence            99999998753             12228899999999999998633211    1246789999999999999987433 


Q ss_pred             CCHHHHHHHHHHHHHCCCCEEEEcCCCCCCCCCCCccccHHHHHHHHHHHCCCEEEEecCCCCCCC--------------
Q 005034          317 GFAADVVAAIDQAAQDGVDIISLSITPNRRPPGIATFFNPIDMALLSAAKAGIFVVQAAGNTGPSP--------------  382 (718)
Q Consensus       317 ~~~~~i~~ai~~a~~~g~~ViN~S~G~~~~~~~~~~~~~~~~~a~~~a~~~GilvV~AAGN~g~~~--------------  382 (718)
                      +...++++||+||+++|++|||||||......  ..+.+.+..+++.|.++|++||+||||+|...              
T Consensus       132 ~~~~~i~~Ai~~Ai~~gvdVIn~SlG~~~~~~--~~~~~~~~~ai~~A~~~GilvV~AAGN~G~~g~~~~~~~~~~p~~~  209 (926)
T 1xf1_A          132 DYARNYAQAIRDAINLGAKVINMSFGNAALAY--ANLPDETKKAFDYAKSKGVSIVTSAGNDSSFGGKTRLPLADHPDYG  209 (926)
T ss_dssp             HHHHHHHHHHHHHHHTTCEEEEECCSSCCCTT--CCCCHHHHHHHHHHHHTTCEEEEECCSCCBTTCTTSCCBTTCCCCB
T ss_pred             CcHHHHHHHHHHHHHhCCcEEEECCCCCCCCc--cccccHHHHHHHHHHhCCcEEEEeCCCCCCcCCccccccccCCCcc
Confidence            34578999999999999999999999864321  23567889999999999999999999999631              


Q ss_pred             -CCCCCCCCceEEEeeeccCCceeeeEEe-CCCceEeeecc---CCC-CCceEEEEEcccccCCCCcccCCccccccCCC
Q 005034          383 -KSMSSFSPWIFTVGAASHDRIYTNSIIL-GNSLTISGVGL---APG-TDKMYTLISALHALNNNTTTTDDMYVGECQDS  456 (718)
Q Consensus       383 -~~~~~~~~~vitVgA~~~~~~~~~~~~~-~~~~~~~~~~~---~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~  456 (718)
                       ...|+.++|+|+|||++.++.+...+.+ +++....+..+   .+. ....|++++...               .|. .
T Consensus       210 tv~~PA~~~~vitVgA~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lv~~~~---------------g~~-~  273 (926)
T 1xf1_A          210 VVGTPAAADSTLTVASYSPDKQLTETVRVKTADQQDKEMPVLSTNRFEPNKAYDYAYANR---------------GTK-E  273 (926)
T ss_dssp             CCCSCTTTCCSEEEEEEBCSEEEEEEEEEECTTSCEEEEEEEEESCCCTTCCEEEEECTT---------------SCS-T
T ss_pred             eecCcccCCceEEEeccccccccccceEEEcCCCcceeeEEEecCCCCCCceEEEEECCC---------------CCC-c
Confidence             2345668999999999999888887776 44433222221   222 256788876532               354 2


Q ss_pred             CCCccCCcCceEEEEEeecccccCcchHHHHHHHHHhCCCcEEEEEeCCCccCcccCCCCCCCCeEEecCcchHHHHHHH
Q 005034          457 SNFNQDLVQGNLLICSYSIRFVLGLSTIKQAFETAKNLSAAGIVFYMDPFVIGFQLNPTPMKMPGIIIPSPDDSKILLQY  536 (718)
Q Consensus       457 ~~~~~~~~~g~i~~~~~~~~~~~~~~~~~~~~~~~~~~ga~~vi~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~l~~~  536 (718)
                      ..+  .+++|||++|.|      +.|.+.++..++..+|+.|+|++++..............+|..++ +..++..|.. 
T Consensus       274 ~~~--~~v~Gkivl~~r------g~~~~~~k~~~~~~~Ga~gvi~~n~~~~~~~~~~~~~~~iP~~~i-~~~~g~~l~~-  343 (926)
T 1xf1_A          274 DDF--KDVKGKIALIER------GDIDFKDKIAKAKKAGAVGVLIYDNQDKGFPIELPNVDQMPAAFI-SRKDGLLLKD-  343 (926)
T ss_dssp             TTT--TTCTTSEEEEEC------CSSCHHHHHHHHHHTTCSEEEEECSSTTCCCEECCCSTTCCEEEE-CHHHHHHHHH-
T ss_pred             cch--hhcCCeEEEEEC------CCCCHHHHHHHHHhCCCcEEEEEecCCCCcccccCccccccEEEE-eHHHHHHHHh-
Confidence            223  579999999988      578899999999999999999998765322223345567888777 4556666653 


Q ss_pred             HhccCCCccccceeeeeceeEEEecccccccCCCCCceeccccCCCCCCCCCCCCCCCCCCceeccCCceeecccCCCCC
Q 005034          537 YNSSLERDEVTKKIIKFGAVACILGGLKANFSNSAPKIMYYSARGPDPEDSFLDDADIMKPNLVAPGNSIWAAWSSLGTD  616 (718)
Q Consensus       537 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~fSs~Gpt~~~~~~~~~g~~KPDI~APG~~I~Sa~~~~~~~  616 (718)
                         ..      ...+++..+.      ........+.++.||||||+.+       +++||||+|||++|+|++      
T Consensus       344 ---~~------~~ti~~~~~~------~~~~~~~~~~~a~FSSrGp~~~-------~~lKPDI~APG~~I~sa~------  395 (926)
T 1xf1_A          344 ---NP------QKTITFNATP------KVLPTASGTKLSRFSSWGLTAD-------GNIKPDIAAPGQDILSSV------  395 (926)
T ss_dssp             ---CS------SCEEEECSSC------EEEECSSCSBCCTTSCCCBCTT-------SCBSCCEEEECCCEEESS------
T ss_pred             ---CC------ceEEEecccc------eecccCCcceeccccCCCCCCC-------CccCceEECCCCCEEeec------
Confidence               11      1122222211      1112344578999999999976       799999999999999999      


Q ss_pred             CccccCccccccCchhhhhHHHHHHHHHHHH----hCCCCCHHH----HHHHHHhcccccccCCCccccccccCCCCCCC
Q 005034          617 SVEFQGESFAMMSGTSMAAPHIAGLAALIKQ----KFPSFSPSA----IASALSTSATLYDKNGGPIMAQRAYAKPDENQ  688 (718)
Q Consensus       617 ~~~~~~~~y~~~sGTSmAaP~VAG~aALl~q----~~p~ls~~~----ik~~L~~TA~~~~~~~~~~~~~~~~~~~~~~~  688 (718)
                          +++.|..+||||||||||||++|||+|    ++|+|+|+|    ||++||+||+++...+.              .
T Consensus       396 ----~~~~y~~~SGTSMAaPhVAG~aALl~q~~k~~~P~~sp~~~~~~Iks~L~~TA~~~~~~~~--------------~  457 (926)
T 1xf1_A          396 ----ANNKYAKLSGTSMSAPLVAGIMGLLQKQYETQYPDMTPSERLDLAKKVLMSSATALYDEDE--------------K  457 (926)
T ss_dssp             ----SCSSSCEEESCTTHHHHHHHHHHHHHHHHHHSSSSSHHHHHHHHHHHHHHHHSBCCEEGGG--------------T
T ss_pred             ----cCCcceecCccchhHHHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHhcCCCcccCCC--------------C
Confidence                456899999999999999999999964    699999997    99999999998754321              2


Q ss_pred             CCCCCCccccccccccccCCCCeeee
Q 005034          689 SPATPFDMGSGFVNATASLDPGLVFD  714 (718)
Q Consensus       689 ~~~~~~~~G~G~vn~~~Al~~~l~~~  714 (718)
                      .++++++||+|+||+.+|+++.+++.
T Consensus       458 ~~~~~~~~G~G~vn~~~A~~~~~~l~  483 (926)
T 1xf1_A          458 AYFSPRQQGAGAVDAKKASAATMYVT  483 (926)
T ss_dssp             EECCHHHHTTCBCCHHHHHHCSEEEE
T ss_pred             ccCChhccCCCccCHHHhcCCCeEEE
Confidence            23567899999999999999988764


No 4  
>3afg_A Subtilisin-like serine protease; propeptide, thermococcus kodakaraensis, hydrolas protease; 2.00A {Thermococcus kodakarensis}
Probab=100.00  E-value=2.3e-59  Score=528.40  Aligned_cols=339  Identities=32%  Similarity=0.503  Sum_probs=272.3

Q ss_pred             CceEEEEecceeeeEEEEeCHHHHHHH-----------hcCCCeEEEEeCceeccccCCC-----CCccCCCcccccccC
Q 005034          117 KYLKLYSYHYLINGFSVFVTPQQAEKL-----------SRRREVANVVSDFSVRTATTHT-----PQFLGLPQGAWIQEG  180 (718)
Q Consensus       117 ~~~~~~~~~~~~ng~~v~~~~~~~~~L-----------~~~p~V~~v~~~~~~~~~~~~~-----~~~~~~~~~~w~~~~  180 (718)
                      +.++.++|. .++||+++++.+++++|           +++|+|++||++..+++.....     ...++++. +|..  
T Consensus        59 g~~v~~~~~-~~~g~~~~l~~~~~~~l~~~~~~~~~~~~~~~~V~~v~~d~~~~~~~~~~~~~~~~~~~~~~~-~~~~--  134 (539)
T 3afg_A           59 GAKIKYNYH-IIPALAVKIKVKDLLIIAGLMDTGYFGNAQLSGVQFIQEDYVVKVAVETEGLDESAAQVMATN-MWNL--  134 (539)
T ss_dssp             TCEEEEECS-SSSEEEEEEEHHHHHHHTTCSCCC---CCCCTTEEEEEECCEEECC-----------CCBCSC-CBCC--
T ss_pred             CCeEEEEee-eeeEEEEEeCHHHHHHHHhhccccccccccCCCeeEEEecccccccCccccCCccccccCcHh-HHhc--
Confidence            467888996 79999999999999999           8999999999999987753321     12233333 5665  


Q ss_pred             CCCCCCCCcEEEEEccccCCCCCCCcCCCCCCCCCCCCCCCccccccCCCCCCCCCceeeeeeecchhhhhcCccCCCCC
Q 005034          181 GYETAGEGVVIGFIDTGIDPTHPSFADDASEHSYPVPSHFSGICEVTRDFPSGSCNRKLIGARHFAASAITRGIFNSSQD  260 (718)
Q Consensus       181 ~~~~~G~gv~VaVIDtGid~~Hp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~  260 (718)
                        +++|+||+|||||||||++||+|.++                              +++.++|..+            
T Consensus       135 --g~~G~gv~VaViDtGid~~Hpdl~~~------------------------------i~~~~d~~~~------------  170 (539)
T 3afg_A          135 --GYDGSGITIGIIDTGIDASHPDLQGK------------------------------VIGWVDFVNG------------  170 (539)
T ss_dssp             --SCCCTTCEEEEEESBCCTTSGGGTTT------------------------------EEEEEETTTC------------
T ss_pred             --CCCCCCcEEEEEecCCCCCChHHhCC------------------------------EeeeEECCCC------------
Confidence              78999999999999999999999863                              3344555432            


Q ss_pred             CCCCCCCCCCccccccccccCCCCCccccccccCccccccCCceEEEEeecccCCCCCHHHHHHHHHHHHHC----CCCE
Q 005034          261 YASPFDGDGHGSHTASVAAGNHGIPVVVTGHHFGNASGMAPRSHIAVYKALYKSFGGFAADVVAAIDQAAQD----GVDI  336 (718)
Q Consensus       261 ~~~~~d~~gHGThVAGiiag~~~~~~~~~g~~~~~~~GvAp~A~i~~~kv~~~~~~~~~~~i~~ai~~a~~~----g~~V  336 (718)
                      ...+.|.+||||||||||+|..+..       .+.+.||||+|+|+.+|+++..+.+..++++++|+||+++    |++|
T Consensus       171 ~~~~~D~~gHGThVAgiiag~~~~~-------~g~~~GvAp~A~l~~~kv~~~~g~~~~~~i~~ai~~a~~~~~~~g~~V  243 (539)
T 3afg_A          171 KTTPYDDNGHGTHVASIAAGTGAAS-------NGKYKGMAPGAKLVGIKVLNGQGSGSISDIINGVDWAVQNKDKYGIKV  243 (539)
T ss_dssp             CSSCCBSSSHHHHHHHHHHCCCGGG-------TTTTCCSCTTCEEEEEECSCTTSEEEHHHHHHHHHHHHHTHHHHTEEE
T ss_pred             CCCCCCCCCCHHHHHHHHhCcCccC-------CCCEEEECCCCEEEEEEeecCCCCcCHHHHHHHHHHHHhhhhhcCCcE
Confidence            1345688999999999999874321       1346899999999999999875667889999999999986    8999


Q ss_pred             EEEcCCCCCCCCCCCccccHHHHHHHHHHHCCCEEEEecCCCCCCC--CCCCCCCCceEEEeeeccCCceeeeEEeCCCc
Q 005034          337 ISLSITPNRRPPGIATFFNPIDMALLSAAKAGIFVVQAAGNTGPSP--KSMSSFSPWIFTVGAASHDRIYTNSIILGNSL  414 (718)
Q Consensus       337 iN~S~G~~~~~~~~~~~~~~~~~a~~~a~~~GilvV~AAGN~g~~~--~~~~~~~~~vitVgA~~~~~~~~~~~~~~~~~  414 (718)
                      ||||||.....    ...+.+.++++.+.++|++||+||||+|...  ..+|+..+++|+|||++.+             
T Consensus       244 in~SlG~~~~~----~~~~~l~~ai~~a~~~GvlvV~AAGN~g~~~~~~~~Pa~~~~vitVgA~~~~-------------  306 (539)
T 3afg_A          244 INLSLGSSQSS----DGTDSLSQAVNNAWDAGLVVVVAAGNSGPNKYTVGSPAAASKVITVGAVDKY-------------  306 (539)
T ss_dssp             EEECCCCCSCC----CSCSHHHHHHHHHHHTTCEEEEECCSCCSSSSCCCTTTTCSSSEEEEEECTT-------------
T ss_pred             EEeCCCCCCCC----ccchHHHHHHHHHHhcCCEEEEECCCCCCCCCcccCCccCCceEEEeeecCC-------------
Confidence            99999986532    2357888999999999999999999999754  4567889999999996421             


Q ss_pred             eEeeeccCCCCCceEEEEEcccccCCCCcccCCccccccCCCCCCccCCcCceEEEEEeecccccCcchHHHHHHHHHhC
Q 005034          415 TISGVGLAPGTDKMYTLISALHALNNNTTTTDDMYVGECQDSSNFNQDLVQGNLLICSYSIRFVLGLSTIKQAFETAKNL  494 (718)
Q Consensus       415 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~g~i~~~~~~~~~~~~~~~~~~~~~~~~~~  494 (718)
                                                                                                      
T Consensus       307 --------------------------------------------------------------------------------  306 (539)
T 3afg_A          307 --------------------------------------------------------------------------------  306 (539)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             CCcEEEEEeCCCccCcccCCCCCCCCeEEecCcchHHHHHHHHhccCCCccccceeeeeceeEEEecccccccCCCCCce
Q 005034          495 SAAGIVFYMDPFVIGFQLNPTPMKMPGIIIPSPDDSKILLQYYNSSLERDEVTKKIIKFGAVACILGGLKANFSNSAPKI  574 (718)
Q Consensus       495 ga~~vi~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  574 (718)
                                                                                                   +.+
T Consensus       307 -----------------------------------------------------------------------------~~~  309 (539)
T 3afg_A          307 -----------------------------------------------------------------------------DVI  309 (539)
T ss_dssp             -----------------------------------------------------------------------------SCB
T ss_pred             -----------------------------------------------------------------------------ccc
Confidence                                                                                         236


Q ss_pred             eccccCCCCCCCCCCCCCCCCCCceeccCCceeecccCCCCCCccccCccccccCchhhhhHHHHHHHHHHHHhCCCCCH
Q 005034          575 MYYSARGPDPEDSFLDDADIMKPNLVAPGNSIWAAWSSLGTDSVEFQGESFAMMSGTSMAAPHIAGLAALIKQKFPSFSP  654 (718)
Q Consensus       575 a~fSs~Gpt~~~~~~~~~g~~KPDI~APG~~I~Sa~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~q~~p~ls~  654 (718)
                      ++|||+||+.+       +++||||+|||++|+++++...... ......|..++|||||||||||++|||+|++|+|++
T Consensus       310 a~fSs~Gp~~~-------~~~kpdi~APG~~I~s~~~~~~~~~-~~~~~~y~~~sGTSmAaP~VAG~aALl~~~~p~~s~  381 (539)
T 3afg_A          310 TDFSSRGPTAD-------NRLKPEVVAPGNWIIAARASGTSMG-QPINDYYTAAPGTAMATPHVAGIAALLLQAHPSWTP  381 (539)
T ss_dssp             CSSSCCCCCTT-------CBCCCSEEEECSSEEEECCTTCCCS-EECSSSEEEECSHHHHHHHHHHHHHHHHHHCTTCCH
T ss_pred             ccccCCCCCCC-------CCCcccEecCcCCEEeeccCCCCCC-CCCcccccccCchHHHHHHHHHHHHHHHHHCCCCCH
Confidence            88999999986       7999999999999999986432100 011236999999999999999999999999999999


Q ss_pred             HHHHHHHHhcccccccCCCccccccccCCCCCCCCCCCCCccccccccccccCCCC
Q 005034          655 SAIASALSTSATLYDKNGGPIMAQRAYAKPDENQSPATPFDMGSGFVNATASLDPG  710 (718)
Q Consensus       655 ~~ik~~L~~TA~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~G~vn~~~Al~~~  710 (718)
                      ++||++|++||++++..+                  .++..||+|+||+.+||+..
T Consensus       382 ~~vk~~L~~tA~~~~~~~------------------~~~~~~G~G~vn~~~Al~~~  419 (539)
T 3afg_A          382 DKVKTALIETADIVKPDE------------------IADIAYGAGRVNAYKAAYYD  419 (539)
T ss_dssp             HHHHHHHHHHSBCSSGGG------------------CSBTTTBTCBCCHHHHHTGG
T ss_pred             HHHHHHHHhhCccCCCCC------------------CCccCccCCccCHHHHhhhc
Confidence            999999999999875332                  13568999999999999854


No 5  
>2z2z_A TK-subtilisin precursor; thermococcus kodakaraensis, hydrolase; 1.87A {Thermococcus kodakarensis} PDB: 2e1p_A 2zwp_A 2zwo_A
Probab=100.00  E-value=2.9e-58  Score=503.34  Aligned_cols=320  Identities=25%  Similarity=0.375  Sum_probs=261.7

Q ss_pred             CCceEEEEecceeeeEEEEeCHHHHHHHhcCCCeEEEEeCceeccccCCC-----------CCc-----cCCCccccccc
Q 005034          116 EKYLKLYSYHYLINGFSVFVTPQQAEKLSRRREVANVVSDFSVRTATTHT-----------PQF-----LGLPQGAWIQE  179 (718)
Q Consensus       116 ~~~~~~~~~~~~~ng~~v~~~~~~~~~L~~~p~V~~v~~~~~~~~~~~~~-----------~~~-----~~~~~~~w~~~  179 (718)
                      .+.++.++|. .++++.++++++.+++|+++|+|++||++..+++.....           ...     ++++. +|.. 
T Consensus        22 ~g~~v~~~~~-~~~~~~~~~~~~~~~~L~~~p~V~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~i~~~~-~w~~-   98 (395)
T 2z2z_A           22 IGGHIVYQFK-LIPAVVVDVPANAVGKLKKMPGVEKVEFDHQAVLLGKPSWLGGGSTQPAQTIPWGIERVKAPS-VWSI-   98 (395)
T ss_dssp             TTCEEEEECS-SSSEEEEEEEGGGHHHHHTSTTEEEEEECCEEEECCEECC------CCSCCCCHHHHHTTCGG-GGGT-
T ss_pred             cCCEEEEEec-cCCEEEEEECHHHHHHHHcCCCceEEEEeeeecccCCCCcccccccCccccCCcchhhcCHHH-HHhh-
Confidence            3668889996 599999999999999999999999999999887643211           111     22222 5665 


Q ss_pred             CCCCCCCCC--cEEEEEccccCCCCCCCcCCCCCCCCCCCCCCCccccccCCCCCCCCCceeeeeeecchhhhhcCccCC
Q 005034          180 GGYETAGEG--VVIGFIDTGIDPTHPSFADDASEHSYPVPSHFSGICEVTRDFPSGSCNRKLIGARHFAASAITRGIFNS  257 (718)
Q Consensus       180 ~~~~~~G~g--v~VaVIDtGid~~Hp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~  257 (718)
                         + +|+|  |+|||||||||++||+|.++..                              ..++|..+..     . 
T Consensus        99 ---~-~G~g~~v~VaViDtGid~~Hp~l~~~~~------------------------------~~~~~~~~~~-----~-  138 (395)
T 2z2z_A           99 ---T-DGSVSVIQVAVLDTGVDYDHPDLAANIA------------------------------WCVSTLRGKV-----S-  138 (395)
T ss_dssp             ---C-SSCCTTCEEEEEESCBCTTCTTTGGGEE------------------------------EEEECGGGCC-----B-
T ss_pred             ---c-CCCCCcEEEEEEcCCCCCCChhHhhccc------------------------------cCccccCCcc-----c-
Confidence               4 8999  9999999999999999997432                              2333333210     0 


Q ss_pred             CCCCCCCCCCCCCccccccccccCCCCCccccccccCccccccCCceEEEEeecccCCCCCHHHHHHHHHHHHHC-----
Q 005034          258 SQDYASPFDGDGHGSHTASVAAGNHGIPVVVTGHHFGNASGMAPRSHIAVYKALYKSFGGFAADVVAAIDQAAQD-----  332 (718)
Q Consensus       258 ~~~~~~~~d~~gHGThVAGiiag~~~~~~~~~g~~~~~~~GvAp~A~i~~~kv~~~~~~~~~~~i~~ai~~a~~~-----  332 (718)
                       .+..+..|.+||||||||||+|..+ +        .++.||||+|+|+.+|+++..+.+..++++++|+||+++     
T Consensus       139 -~~~~~~~d~~gHGT~vAgiia~~~n-~--------~g~~GvAp~a~l~~~kv~~~~g~~~~~~i~~ai~~a~~~~~~~~  208 (395)
T 2z2z_A          139 -TKLRDCADQNGHGTHVIGTIAALNN-D--------IGVVGVAPGVQIYSVRVLDARGSGSYSDIAIGIEQAILGPDGVA  208 (395)
T ss_dssp             -CCHHHHBCSSSHHHHHHHHHHCCCS-S--------SSCCCSSTTCEEEEEECSCTTSEEEHHHHHHHHHHHHHTTTTCS
T ss_pred             -CCCCCCCCCCCCHHHHHHHHHeecC-C--------CceEEECCCCEEEEEEEecCCCCccHHHHHHHHHHHHhCccccc
Confidence             0001235788999999999999742 1        346899999999999999875667889999999999998     


Q ss_pred             ---------------CCCEEEEcCCCCCCCCCCCccccHHHHHHHHHHHCCCEEEEecCCCCCCCCCCCCCCCceEEEee
Q 005034          333 ---------------GVDIISLSITPNRRPPGIATFFNPIDMALLSAAKAGIFVVQAAGNTGPSPKSMSSFSPWIFTVGA  397 (718)
Q Consensus       333 ---------------g~~ViN~S~G~~~~~~~~~~~~~~~~~a~~~a~~~GilvV~AAGN~g~~~~~~~~~~~~vitVgA  397 (718)
                                     +++|||||||....       ...+.++++.+.++|++||+||||+|.....+|+..+++|+|||
T Consensus       209 ~~~~~~~~~~~~~~~~~~Vin~S~G~~~~-------~~~~~~ai~~a~~~gv~vV~AAGN~g~~~~~~Pa~~~~vi~Vga  281 (395)
T 2z2z_A          209 DKDGDGIIAGDPDDDAAEVISMSLGGPAD-------DSYLYDMIIQAYNAGIVIVAASGNEGAPSPSYPAAYPEVIAVGA  281 (395)
T ss_dssp             STTCSSCCTTCTTSCCCSEEEECEEBSCC-------CHHHHHHHHHHHHTTCEEEEECCSSCCSSCCBTTTSTTEEEEEE
T ss_pred             cccccccccccccCCCCeEEEecCCCCCC-------CHHHHHHHHHHHHCCCEEEEECCCCCCCCCCCccCCCCEEEEEE
Confidence                           99999999997542       35788889999999999999999999988889999999999999


Q ss_pred             eccCCceeeeEEeCCCceEeeeccCCCCCceEEEEEcccccCCCCcccCCccccccCCCCCCccCCcCceEEEEEeeccc
Q 005034          398 ASHDRIYTNSIILGNSLTISGVGLAPGTDKMYTLISALHALNNNTTTTDDMYVGECQDSSNFNQDLVQGNLLICSYSIRF  477 (718)
Q Consensus       398 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~g~i~~~~~~~~~  477 (718)
                      ++.+                                                                            
T Consensus       282 ~~~~----------------------------------------------------------------------------  285 (395)
T 2z2z_A          282 IDSN----------------------------------------------------------------------------  285 (395)
T ss_dssp             ECTT----------------------------------------------------------------------------
T ss_pred             ecCC----------------------------------------------------------------------------
Confidence            7432                                                                            


Q ss_pred             ccCcchHHHHHHHHHhCCCcEEEEEeCCCccCcccCCCCCCCCeEEecCcchHHHHHHHHhccCCCccccceeeeeceeE
Q 005034          478 VLGLSTIKQAFETAKNLSAAGIVFYMDPFVIGFQLNPTPMKMPGIIIPSPDDSKILLQYYNSSLERDEVTKKIIKFGAVA  557 (718)
Q Consensus       478 ~~~~~~~~~~~~~~~~~ga~~vi~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~  557 (718)
                                                                                                      
T Consensus       286 --------------------------------------------------------------------------------  285 (395)
T 2z2z_A          286 --------------------------------------------------------------------------------  285 (395)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             EEecccccccCCCCCceeccccCCCCCCCCCCCCCCCCCCceeccCCceeecccCCCCCCccccCccccccCchhhhhHH
Q 005034          558 CILGGLKANFSNSAPKIMYYSARGPDPEDSFLDDADIMKPNLVAPGNSIWAAWSSLGTDSVEFQGESFAMMSGTSMAAPH  637 (718)
Q Consensus       558 ~~~~~~~~~~~~~~~~~a~fSs~Gpt~~~~~~~~~g~~KPDI~APG~~I~Sa~~~~~~~~~~~~~~~y~~~sGTSmAaP~  637 (718)
                                    +.+++||++||               +|+|||++|+|++          +++.|..++||||||||
T Consensus       286 --------------~~~a~fS~~G~---------------~v~APG~~i~s~~----------~~~~y~~~sGTS~AaP~  326 (395)
T 2z2z_A          286 --------------DNIASFSNRQP---------------EVSAPGVDILSTY----------PDDSYETLMGTAMATPH  326 (395)
T ss_dssp             --------------SCBCTTSCSSC---------------SEEEECSSEEEEE----------TTTEEEEEESHHHHHHH
T ss_pred             --------------CCCCcccCCCC---------------CEEeCCCCeeeec----------CCCceEecCCHHHHHHH
Confidence                          23688999997               6899999999998          56689999999999999


Q ss_pred             HHHHHHHHHHhCC-------------CCCHHHHHHHHHhcccccccCCCccccccccCCCCCCCCCCCCCcccccccccc
Q 005034          638 IAGLAALIKQKFP-------------SFSPSAIASALSTSATLYDKNGGPIMAQRAYAKPDENQSPATPFDMGSGFVNAT  704 (718)
Q Consensus       638 VAG~aALl~q~~p-------------~ls~~~ik~~L~~TA~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~G~vn~~  704 (718)
                      |||++|||+|++|             .|++.+||++|++||+++...+.                   ++.||||+||+.
T Consensus       327 VaG~aAll~~~~p~~~~~~~~~~~~~~ls~~~v~~~L~~tA~~~~~~g~-------------------~~~~G~G~vd~~  387 (395)
T 2z2z_A          327 VSGVVALIQAAYYQKYGKILPVGTFDDISKNTVRGILHITADDLGPTGW-------------------DADYGYGVVRAA  387 (395)
T ss_dssp             HHHHHHHHHHHHHHHHSSCCCCCCTTCCSSSSHHHHHHHHSBCCSSSSS-------------------BTTTBTCBCCHH
T ss_pred             HHHHHHHHHHhCccccccccccccccCCCHHHHHHHHHhhccccCCCCC-------------------CCCccCceeCHH
Confidence            9999999999999             99999999999999998754332                   578999999999


Q ss_pred             ccCCC
Q 005034          705 ASLDP  709 (718)
Q Consensus       705 ~Al~~  709 (718)
                      +||+.
T Consensus       388 ~A~~~  392 (395)
T 2z2z_A          388 LAVQA  392 (395)
T ss_dssp             HHHHH
T ss_pred             HHHHH
Confidence            99864


No 6  
>3t41_A Epidermin leader peptide processing serine protea; structural genomics, center for structural genomics of infec diseases, csgid; 1.95A {Staphylococcus aureus} PDB: 3qfh_A
Probab=100.00  E-value=9.2e-55  Score=487.85  Aligned_cols=338  Identities=21%  Similarity=0.264  Sum_probs=262.7

Q ss_pred             CCceEEEEecceeeeEEEEeCHHHHHHHhc-CCCeEEEEeCceeccccCCCCC----------cc-----CCCccccccc
Q 005034          116 EKYLKLYSYHYLINGFSVFVTPQQAEKLSR-RREVANVVSDFSVRTATTHTPQ----------FL-----GLPQGAWIQE  179 (718)
Q Consensus       116 ~~~~~~~~~~~~~ng~~v~~~~~~~~~L~~-~p~V~~v~~~~~~~~~~~~~~~----------~~-----~~~~~~w~~~  179 (718)
                      .+.+++++|. .+++|.++++++++++|++ +|+|++|+++..+++.......          .|     ..+..+|.. 
T Consensus        64 ~g~~v~~~~~-~~~~~~~~~~~~~~~~L~~~~p~V~~v~~~~~~~~~~~~~~~~~~~~~~~~~~w~l~~i~~~~~~~~~-  141 (471)
T 3t41_A           64 KSLNVVYNIP-ELHVAQIKMTKMHANALANYKNDIKYINATCSTCITSEKTIDRTSNESLFSRQWDMNKITNNGASYDD-  141 (471)
T ss_dssp             HTCEEEEEEG-GGTEEEEEECHHHHHHHHTCTTTEEEEEECCSSCBCCCCCCCC---CCSCCCCHHHHTTTTTTGGGGG-
T ss_pred             CCCEEEEecC-CccEEEEEeCHHHHHHHHhcCCCCcEEEecceeccccccccccCCCCccccccccHhhccCcHHHHhc-
Confidence            4667888885 5999999999999999999 9999999999888775432211          11     122235654 


Q ss_pred             CCCCCCCCCcEEEEEccccCCCCCCCcCCCCCCCCCCCCCCCccccccCCCCCCCCCceeeeeeecchhhhhcCccCCCC
Q 005034          180 GGYETAGEGVVIGFIDTGIDPTHPSFADDASEHSYPVPSHFSGICEVTRDFPSGSCNRKLIGARHFAASAITRGIFNSSQ  259 (718)
Q Consensus       180 ~~~~~~G~gv~VaVIDtGid~~Hp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~  259 (718)
                         +++|+||+|||||||||++||+|.++......                       .++....|...     ..+...
T Consensus       142 ---~~~G~gv~VaViDtGid~~Hp~~~~~~~~~~~-----------------------~~~~~~~~~~~-----~~~~~~  190 (471)
T 3t41_A          142 ---LPKHANTKIAIIDTGVMKNHDDLKNNFSTDSK-----------------------NLVPLNGFRGT-----EPEETG  190 (471)
T ss_dssp             ---CCSSCCCCEEEEESCCCTTCTTTTTTBCTTCE-----------------------ECCCTTCGGGC-----CTTCCC
T ss_pred             ---cCCCCCcEEEEEeCCCCCCChhHhcCcccCCc-----------------------ccccCCCccCC-----CcccCC
Confidence               68999999999999999999999986541000                       00000111110     011112


Q ss_pred             CCCCCCCCCCCccccccccccCCCCCccccccccCccccccCCceEEEEeecccCCCCCHHHHHHHHHHHHHCCCCEEEE
Q 005034          260 DYASPFDGDGHGSHTASVAAGNHGIPVVVTGHHFGNASGMAPRSHIAVYKALYKSFGGFAADVVAAIDQAAQDGVDIISL  339 (718)
Q Consensus       260 ~~~~~~d~~gHGThVAGiiag~~~~~~~~~g~~~~~~~GvAp~A~i~~~kv~~~~~~~~~~~i~~ai~~a~~~g~~ViN~  339 (718)
                      +...+.|..||||||||||+|+.            .+.||||+|+|+.+|+++. ..+...++++||+|+++++++||||
T Consensus       191 ~~~~~~d~~gHGT~vAgiiaa~g------------~~~GvAp~a~l~~~kv~~~-~~~~~~~i~~ai~~a~~~g~~Vin~  257 (471)
T 3t41_A          191 DVHDVNDRKGHGTMVSGQTSANG------------KLIGVAPNNKFTMYRVFGS-KKTELLWVSKAIVQAANDGNQVINI  257 (471)
T ss_dssp             CTTCCCCSSSHHHHHHHHHHCBS------------SSBCSSTTSCEEEEECCSS-SCCCHHHHHHHHHHHHHTTCSEEEE
T ss_pred             CCCCCcCCCCccchhhheeecCC------------ceeEECCCCeEEEEEeccC-CCCcHHHHHHHHHHHHhCCCCEEEe
Confidence            23456788999999999999873            3579999999999999987 6688899999999999999999999


Q ss_pred             cCCCCCCCC----C-----CCccccHHHHHHHHHHHCCCEEEEecCCCCCCCCC------------------CCCCCCce
Q 005034          340 SITPNRRPP----G-----IATFFNPIDMALLSAAKAGIFVVQAAGNTGPSPKS------------------MSSFSPWI  392 (718)
Q Consensus       340 S~G~~~~~~----~-----~~~~~~~~~~a~~~a~~~GilvV~AAGN~g~~~~~------------------~~~~~~~v  392 (718)
                      |||......    .     .....+.+.++++.+.++|++||+||||+|.....                  +|+..+++
T Consensus       258 S~G~~~~~~~~~~~~~~~~~~~~~~~~~~ai~~a~~~Gi~vV~AAGN~g~~~~~~~~~~~~~~~~~~~~~~~~Pa~~~~v  337 (471)
T 3t41_A          258 SVGSYIILDKNDHQTFRKDEKVEYDALQKAINYAKKKKSIVVAAAGNDGIDVNDKQKLKLQREYQGNGEVKDVPASMDNV  337 (471)
T ss_dssp             CCCEEEEECTTCCCSEESSCHHHHHHHHHHHHHHHHTTCEEEEECCSSCCBTTCHHHHHHTTTCCSSSEEEEETTTSTTE
T ss_pred             CCCCCCCCccccccccccccchhHHHHHHHHHHHHhCCCEEEEEcCCCCcCCCcccccccccccccCCceeeccccCCCe
Confidence            999732100    0     01234678899999999999999999999986542                  67778889


Q ss_pred             EEEeeeccCCceeeeEEeCCCceEeeeccCCCCCceEEEEEcccccCCCCcccCCccccccCCCCCCccCCcCceEEEEE
Q 005034          393 FTVGAASHDRIYTNSIILGNSLTISGVGLAPGTDKMYTLISALHALNNNTTTTDDMYVGECQDSSNFNQDLVQGNLLICS  472 (718)
Q Consensus       393 itVgA~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~g~i~~~~  472 (718)
                      |+|||++.+                                                                       
T Consensus       338 itVgA~~~~-----------------------------------------------------------------------  346 (471)
T 3t41_A          338 VTVGSTDQK-----------------------------------------------------------------------  346 (471)
T ss_dssp             EEEEEECTT-----------------------------------------------------------------------
T ss_pred             EEEEeeCCC-----------------------------------------------------------------------
Confidence            999886432                                                                       


Q ss_pred             eecccccCcchHHHHHHHHHhCCCcEEEEEeCCCccCcccCCCCCCCCeEEecCcchHHHHHHHHhccCCCccccceeee
Q 005034          473 YSIRFVLGLSTIKQAFETAKNLSAAGIVFYMDPFVIGFQLNPTPMKMPGIIIPSPDDSKILLQYYNSSLERDEVTKKIIK  552 (718)
Q Consensus       473 ~~~~~~~~~~~~~~~~~~~~~~ga~~vi~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~  552 (718)
                                                                                                      
T Consensus       347 --------------------------------------------------------------------------------  346 (471)
T 3t41_A          347 --------------------------------------------------------------------------------  346 (471)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             eceeEEEecccccccCCCCCceeccccCCCCCCCCCCCCCCCCCCceeccCCc----------------------eeecc
Q 005034          553 FGAVACILGGLKANFSNSAPKIMYYSARGPDPEDSFLDDADIMKPNLVAPGNS----------------------IWAAW  610 (718)
Q Consensus       553 ~~~~~~~~~~~~~~~~~~~~~~a~fSs~Gpt~~~~~~~~~g~~KPDI~APG~~----------------------I~Sa~  610 (718)
                                         +.++.||++||+.            |||+|||++                      |++++
T Consensus       347 -------------------~~~a~fS~~G~~~------------~di~APG~~i~~~~~~g~~~~~~~~~~~~~~i~s~~  395 (471)
T 3t41_A          347 -------------------SNLSEFSNFGMNY------------TDIAAPGGSFAYLNQFGVDKWMNEGYMHKENILTTA  395 (471)
T ss_dssp             -------------------SSBCTTCCBCTTT------------CCEEEECCCCHHHHHHHHHHHHHTTTHHHHSEEEEC
T ss_pred             -------------------CCCCCccCCCCCC------------CeEEecCCCcccccccccccccccccccCceeEecC
Confidence                               2468899999963            399999987                      78887


Q ss_pred             cCCCCCCccccCccccccCchhhhhHHHHHHHHHHHHhCC-CCCHHHHHHHHHhcccccccCCCccccccccCCCCCCCC
Q 005034          611 SSLGTDSVEFQGESFAMMSGTSMAAPHIAGLAALIKQKFP-SFSPSAIASALSTSATLYDKNGGPIMAQRAYAKPDENQS  689 (718)
Q Consensus       611 ~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~q~~p-~ls~~~ik~~L~~TA~~~~~~~~~~~~~~~~~~~~~~~~  689 (718)
                                +++.|..++|||||||||||++|||+|++| .++|++||++|++||++...                   
T Consensus       396 ----------~~~~~~~~sGTS~AaP~VAG~aAll~~~~p~~~~~~~v~~~L~~tA~~~~~-------------------  446 (471)
T 3t41_A          396 ----------NNGRYIYQAGTALATPKVSGALALIIDKYHLEKHPDKAIELLYQHGTSKNN-------------------  446 (471)
T ss_dssp             ----------TTSSEEEECSHHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHHHSBCCSC-------------------
T ss_pred             ----------CCCCEEeecchHHHHHHHHHHHHHHHHhccCCCCHHHHHHHHHHhCCCCCC-------------------
Confidence                      566899999999999999999999999999 89999999999999987643                   


Q ss_pred             CCCCCccccccccccccCCCCe
Q 005034          690 PATPFDMGSGFVNATASLDPGL  711 (718)
Q Consensus       690 ~~~~~~~G~G~vn~~~Al~~~l  711 (718)
                       .++..||||+||+.+||+...
T Consensus       447 -~~~~~~G~G~vd~~~Al~~a~  467 (471)
T 3t41_A          447 -KPFSRYGHGELDVYKALNVAN  467 (471)
T ss_dssp             -CCHHHHTTCBBCHHHHTTTTC
T ss_pred             -CCcCccccChhCHHHHHHHHH
Confidence             235689999999999998654


No 7  
>1r6v_A Subtilisin-like serine protease; sandwich domain, propeptide, hydrolase; 1.70A {Fervidobacterium pennivorans} SCOP: c.41.1.1
Probab=100.00  E-value=3.8e-54  Score=491.09  Aligned_cols=339  Identities=23%  Similarity=0.295  Sum_probs=255.7

Q ss_pred             CceEEEEecceeeeEEEEeCH----HHHHHHh--cCCCeEEEEeCceecccc----CCC---------------------
Q 005034          117 KYLKLYSYHYLINGFSVFVTP----QQAEKLS--RRREVANVVSDFSVRTAT----THT---------------------  165 (718)
Q Consensus       117 ~~~~~~~~~~~~ng~~v~~~~----~~~~~L~--~~p~V~~v~~~~~~~~~~----~~~---------------------  165 (718)
                      +.++.+++. .+++++++++.    +.+++|+  ++|+|++|||+..+++..    ...                     
T Consensus        52 g~~v~~~~~-~i~~~~~~~~~~~~~~~~~~l~~~~~~~V~~vepd~~~~l~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~  130 (671)
T 1r6v_A           52 NGKVVLELP-QIKVVSIKLNGMTVKQAYDKIKALALKGIRYVEPSYKRELIKPTVVKPNPDMYKIRKPGLNSTARDYGEE  130 (671)
T ss_dssp             TCEEEEEEG-GGTEEEEECSSCCHHHHHHHHTTSCCSSEEEEECCBCCEECCCEECCCCTTTTCSSSSCCSSSTTCCSST
T ss_pred             CCeEEEEcC-CCcEEEEEeCCcCHHHHHHHHHhccCCCceEEecCeEEEeccccccCccccccccccccccccccccccc
Confidence            346777775 68899999865    3456776  489999999997765431    000                     


Q ss_pred             --CCc-----cCCCccc-ccccCCCCCCCCCcEEEEEccccCCCCCCCcCCCCCCCCCCCCCCCccccccCCCCCCCCCc
Q 005034          166 --PQF-----LGLPQGA-WIQEGGYETAGEGVVIGFIDTGIDPTHPSFADDASEHSYPVPSHFSGICEVTRDFPSGSCNR  237 (718)
Q Consensus       166 --~~~-----~~~~~~~-w~~~~~~~~~G~gv~VaVIDtGid~~Hp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  237 (718)
                        ...     ++++. + |..     ++|+||+|||||||||++||+|.++..          .                
T Consensus       131 ~~~~~W~l~~I~~~~-a~w~~-----~tG~gV~VAVIDTGVd~~HpdL~~~~~----------~----------------  178 (671)
T 1r6v_A          131 LSNELWGLEAIGVTQ-QLWEE-----ASGTNIIVAVVDTGVDGTHPDLEGQVI----------A----------------  178 (671)
T ss_dssp             TGGGCHHHHHTTCCH-HHHHH-----CSCTTCEEEEEESCCBTTSGGGTTTBC----------C----------------
T ss_pred             ccccCCchhccCCch-hhhhc-----cCCCCCEEEEEeCCCCCCCccccccEE----------e----------------
Confidence              001     22223 3 654     789999999999999999999997643          0                


Q ss_pred             eeeeeeecchhhhhcCccCCCCCCCCCCCCCCCccccccccccCCCCCccccccccCccccccCCceEEEEeecccC---
Q 005034          238 KLIGARHFAASAITRGIFNSSQDYASPFDGDGHGSHTASVAAGNHGIPVVVTGHHFGNASGMAPRSHIAVYKALYKS---  314 (718)
Q Consensus       238 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~d~~gHGThVAGiiag~~~~~~~~~g~~~~~~~GvAp~A~i~~~kv~~~~---  314 (718)
                         +...+.+.      ..  ....+..|.+||||||||||+|..+.         .++.||||+|+|+.+|+++..   
T Consensus       179 ---g~~~~~~~------~~--p~~~d~~d~~gHGThVAGiIAa~~ng---------~gv~GVAP~A~I~~vkv~~~~~~~  238 (671)
T 1r6v_A          179 ---GYRPAFDE------EL--PAGTDSSYGGSAGTHVAGTIAAKKDG---------KGIVGVAPGAKIMPIVIFDDPALV  238 (671)
T ss_dssp             ---EEEGGGTE------EE--CTTCBCCTTCSHHHHHHHHHHCCCSS---------SSCCCSCTTSEEEEEESBCCHHHH
T ss_pred             ---cccccCCC------cC--CCCCCCccCCCcchhhhhhhhccCCC---------CceEEECCCCEEEEEEeccCcccc
Confidence               00000000      00  00122346789999999999997421         356899999999999999761   


Q ss_pred             -CC--CCHHHHHHHHHHHHHCCCCEEEEcCCCCCCCCCCCccccHHHHHHHHHHHCCCEEEEecCCCCCCC-CCCCCCCC
Q 005034          315 -FG--GFAADVVAAIDQAAQDGVDIISLSITPNRRPPGIATFFNPIDMALLSAAKAGIFVVQAAGNTGPSP-KSMSSFSP  390 (718)
Q Consensus       315 -~~--~~~~~i~~ai~~a~~~g~~ViN~S~G~~~~~~~~~~~~~~~~~a~~~a~~~GilvV~AAGN~g~~~-~~~~~~~~  390 (718)
                       ..  .....+++||+||+++|++|||||||...       +...+.++++.+.++|++||+||||+|.+. ..+|+..+
T Consensus       239 ~g~g~~s~~~i~~ai~~A~~~gadVIN~SlG~~~-------~s~~l~~Ai~~A~~~GvlvVaAAGN~g~~~~~~yPA~~~  311 (671)
T 1r6v_A          239 GGNGYVGDDYVAAGIIWATDHGAKVMNHSWGGWG-------YSYTMKEAFDYAMEHGVVMVVSAGNNTSDSHHQYPAGYP  311 (671)
T ss_dssp             CTTSBCCHHHHHHHHHHHHHTTCSEEEECEEBSC-------CCHHHHHHHHHHHHTTCEEEEECCSCSSSCCCCBTTTST
T ss_pred             CCCCccCHHHHHHHHHHHHHcCCCEEEeCCCCCC-------CCHHHHHHHHHHHhCCCEEEEeCCCCCCCCCccCcccCC
Confidence             12  34567899999999999999999999743       346788999999999999999999999875 67888999


Q ss_pred             ceEEEeeeccCCceeeeEEeCCCceEeeeccCCCCCceEEEEEcccccCCCCcccCCccccccCCCCCCccCCcCceEEE
Q 005034          391 WIFTVGAASHDRIYTNSIILGNSLTISGVGLAPGTDKMYTLISALHALNNNTTTTDDMYVGECQDSSNFNQDLVQGNLLI  470 (718)
Q Consensus       391 ~vitVgA~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~g~i~~  470 (718)
                      ++|+|||++.++.                                                                   
T Consensus       312 ~VItVgA~d~~g~-------------------------------------------------------------------  324 (671)
T 1r6v_A          312 GVIQVAALDYYGG-------------------------------------------------------------------  324 (671)
T ss_dssp             TCEEEEEEEEETT-------------------------------------------------------------------
T ss_pred             CeEEEEEEcCCCC-------------------------------------------------------------------
Confidence            9999999753211                                                                   


Q ss_pred             EEeecccccCcchHHHHHHHHHhCCCcEEEEEeCCCccCcccCCCCCCCCeEEecCcchHHHHHHHHhccCCCcccccee
Q 005034          471 CSYSIRFVLGLSTIKQAFETAKNLSAAGIVFYMDPFVIGFQLNPTPMKMPGIIIPSPDDSKILLQYYNSSLERDEVTKKI  550 (718)
Q Consensus       471 ~~~~~~~~~~~~~~~~~~~~~~~~ga~~vi~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~  550 (718)
                                                                                                      
T Consensus       325 --------------------------------------------------------------------------------  324 (671)
T 1r6v_A          325 --------------------------------------------------------------------------------  324 (671)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             eeeceeEEEecccccccCCCCCceeccccCCCCCCCCCCCCCCCCCCceeccCCceeecccCCCCCC--------ccccC
Q 005034          551 IKFGAVACILGGLKANFSNSAPKIMYYSARGPDPEDSFLDDADIMKPNLVAPGNSIWAAWSSLGTDS--------VEFQG  622 (718)
Q Consensus       551 ~~~~~~~~~~~~~~~~~~~~~~~~a~fSs~Gpt~~~~~~~~~g~~KPDI~APG~~I~Sa~~~~~~~~--------~~~~~  622 (718)
                                          ...+++|||+||..             ||+|||++|+|+++......        ....+
T Consensus       325 --------------------~~~~a~fSn~G~~v-------------dv~APG~~I~St~p~~~~~g~~~~~~~~~~~~~  371 (671)
T 1r6v_A          325 --------------------TFRVAGFSSRSDGV-------------SVGAPGVTILSTVPGEDSIGYEGHNENVPATNG  371 (671)
T ss_dssp             --------------------EEEECSSSCCCTTE-------------EEEEECSSEEEECCCTTSTTCCCCCTTCCCSSS
T ss_pred             --------------------ceeeccccCCCCCe-------------eEEecCCCEEeecCCCCccccccccccccccCC
Confidence                                01268899999976             99999999999986532110        01124


Q ss_pred             ccccccCchhhhhHHHHHHHHHHHHhCCCCCHHHHHHHHHhcccccccCCCccccccccCCCCCCCCCCCCCcccccccc
Q 005034          623 ESFAMMSGTSMAAPHIAGLAALIKQKFPSFSPSAIASALSTSATLYDKNGGPIMAQRAYAKPDENQSPATPFDMGSGFVN  702 (718)
Q Consensus       623 ~~y~~~sGTSmAaP~VAG~aALl~q~~p~ls~~~ik~~L~~TA~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~G~vn  702 (718)
                      +.|..++|||||||||||++|||+|++|++++.|||++|++||++++..+.                   +..+|||+||
T Consensus       372 ~~y~~~sGTSmAAP~VAGvaALl~s~~P~lt~~~Vr~~L~~TA~~~~~~g~-------------------d~~~G~G~vn  432 (671)
T 1r6v_A          372 GTYDYYQGTSMAAPHVTGVVAVLLQKFPNAKPWQIRKLLENTAFDFNGNGW-------------------DHDTGYGLVK  432 (671)
T ss_dssp             CCEEEEESHHHHHHHHHHHHHHHHHHCTTCCHHHHHHHHHHHCBCSSSSSC-------------------BTTTBTCBCC
T ss_pred             CceEEecCccHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHhCcCCCCCCC-------------------CCCcccceeC
Confidence            579999999999999999999999999999999999999999998765433                   5689999999


Q ss_pred             ccccCCCCeeee
Q 005034          703 ATASLDPGLVFD  714 (718)
Q Consensus       703 ~~~Al~~~l~~~  714 (718)
                      +.+||+..+..+
T Consensus       433 a~~Al~~~l~~~  444 (671)
T 1r6v_A          433 LDAALQGPLPTQ  444 (671)
T ss_dssp             HHHHHHCCCCSS
T ss_pred             HHHHhhhhcCCC
Confidence            999998766543


No 8  
>2p4e_P Proprotein convertase subtilisin/kexin type 9; protease, LDL receptor, LDL, endocytosis, hydrol; 1.98A {Homo sapiens}
Probab=100.00  E-value=1.8e-56  Score=506.62  Aligned_cols=340  Identities=21%  Similarity=0.234  Sum_probs=40.6

Q ss_pred             CceEEEEecceeeeEEEEeCHHHHHHHhcCCCeEEEEeCceeccccCCCCCccCCCc--------ccccccCCCCCCCCC
Q 005034          117 KYLKLYSYHYLINGFSVFVTPQQAEKLSRRREVANVVSDFSVRTATTHTPQFLGLPQ--------GAWIQEGGYETAGEG  188 (718)
Q Consensus       117 ~~~~~~~~~~~~ng~~v~~~~~~~~~L~~~p~V~~v~~~~~~~~~~~~~~~~~~~~~--------~~w~~~~~~~~~G~g  188 (718)
                      ..++.+.|..+|+||+++++++.+++|+++|+|++||++..+....    ..|++..        ..|.    .+.+|+|
T Consensus       108 ~~~v~~~y~~~~~Gfsv~l~~~~l~~L~~~P~V~~Vepd~~v~~~~----~pWgL~~i~~~~~~~~~w~----~~~~G~G  179 (692)
T 2p4e_P          108 LTKILHVFHGLLPGFLVKMSGDLLELALKLPHVDYIEEDSSVFAQS----IPWNLERITPPRYRADEYQ----PPDGGSL  179 (692)
T ss_dssp             CCEEEEEECSSSCEEEEECCGGGHHHHHTSTTEEEEEEEEEEEEC-----------------------------------
T ss_pred             ccceeeEeeccccEEEEEeCHHHHHHHHcCCCceEEEeccccccCC----CCcchhhcccccccccccc----cCCCCCC
Confidence            4578899999999999999999999999999999999999876521    1133321        1343    3689999


Q ss_pred             cEEEEEccccCCCCCCCcCCCCCCCCCCCCCCCccccccCCCCCCCCCceeeeeeecchhhhhcCccCCCCCCCCCCCCC
Q 005034          189 VVIGFIDTGIDPTHPSFADDASEHSYPVPSHFSGICEVTRDFPSGSCNRKLIGARHFAASAITRGIFNSSQDYASPFDGD  268 (718)
Q Consensus       189 v~VaVIDtGid~~Hp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~d~~  268 (718)
                      |+|||||||||++||+|.++...      ..|+.                      +.+.       +.......+.|.+
T Consensus       180 V~VaVIDTGId~~HpdL~gr~~~------~~~~~----------------------~~d~-------dg~~~~~~~~D~~  224 (692)
T 2p4e_P          180 VEVYLLDTSIQSDHREIEGRVMV------TDFEN----------------------VPEE-------DGTRFHRQASKCD  224 (692)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             cEEEEEcCCCCCCChhhcCceEe------ccccc----------------------ccCC-------CCCcccCCCCCCC
Confidence            99999999999999999986430      00100                      0000       0000012456889


Q ss_pred             CCccccccccccCCCCCccccccccCccccccCCceEEEEeecccCCCCCHHHHHHHHHHHHHC------CCCEEEEcCC
Q 005034          269 GHGSHTASVAAGNHGIPVVVTGHHFGNASGMAPRSHIAVYKALYKSFGGFAADVVAAIDQAAQD------GVDIISLSIT  342 (718)
Q Consensus       269 gHGThVAGiiag~~~~~~~~~g~~~~~~~GvAp~A~i~~~kv~~~~~~~~~~~i~~ai~~a~~~------g~~ViN~S~G  342 (718)
                      ||||||||||+|+.              .||||+|+|+.+|+++.++.++.++++++|+|++++      +++|||||||
T Consensus       225 GHGTHVAGiIAg~~--------------~GVAP~A~L~~vKVl~~~G~g~~s~ii~aI~~a~~~~~~~~~g~~VINmSlG  290 (692)
T 2p4e_P          225 SHGTHLAGVVSGRD--------------AGVAKGASMRSLRVLNCQGKGTVSGTLIGLEFIRKSQLVQPVGPLVVLLPLA  290 (692)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             CcHHHhhhHhhcCC--------------CccCCCCEEEEEEeecCCCCCCHHHHHHHHHHHHhhhhcccCCceEEEecCC
Confidence            99999999999863              599999999999999886668889999999999986      8999999999


Q ss_pred             CCCCCCCCCccccHHHHHHHHHHHCCCEEEEecCCCCCCCC-CCCCCCCceEEEeeeccCCceeeeEEeCCCceEeeecc
Q 005034          343 PNRRPPGIATFFNPIDMALLSAAKAGIFVVQAAGNTGPSPK-SMSSFSPWIFTVGAASHDRIYTNSIILGNSLTISGVGL  421 (718)
Q Consensus       343 ~~~~~~~~~~~~~~~~~a~~~a~~~GilvV~AAGN~g~~~~-~~~~~~~~vitVgA~~~~~~~~~~~~~~~~~~~~~~~~  421 (718)
                      +..        ...++++++.+.++|++||+||||+|.+.. .+|+..+++|+|||++.++....               
T Consensus       291 g~~--------s~~l~~Ai~~A~~~GVlvVaAAGN~G~~~~~~sPA~~~~vItVGA~d~~~~~a~---------------  347 (692)
T 2p4e_P          291 GGY--------SRVLNAACQRLARAGVVLVTAAGNFRDDACLYSPASAPEVITVGATNAQDQPVT---------------  347 (692)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             CCC--------cHHHHHHHHHHHHCCCEEEEECCCCCCCCCccCcccCCCEEEEEEEcCCCCccc---------------
Confidence            642        356788888899999999999999998654 35888999999999764321000               


Q ss_pred             CCCCCceEEEEEcccccCCCCcccCCccccccCCCCCCccCCcCceEEEEEeecccccCcchHHHHHHHHHhCCCcEEEE
Q 005034          422 APGTDKMYTLISALHALNNNTTTTDDMYVGECQDSSNFNQDLVQGNLLICSYSIRFVLGLSTIKQAFETAKNLSAAGIVF  501 (718)
Q Consensus       422 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~g~i~~~~~~~~~~~~~~~~~~~~~~~~~~ga~~vi~  501 (718)
                                                                                                      
T Consensus       348 --------------------------------------------------------------------------------  347 (692)
T 2p4e_P          348 --------------------------------------------------------------------------------  347 (692)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             EeCCCccCcccCCCCCCCCeEEecCcchHHHHHHHHhccCCCccccceeeeeceeEEEecccccccCCCCCceeccccCC
Q 005034          502 YMDPFVIGFQLNPTPMKMPGIIIPSPDDSKILLQYYNSSLERDEVTKKIIKFGAVACILGGLKANFSNSAPKIMYYSARG  581 (718)
Q Consensus       502 ~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~fSs~G  581 (718)
                                                                                             .-+.||+||
T Consensus       348 -----------------------------------------------------------------------~ss~fSn~G  356 (692)
T 2p4e_P          348 -----------------------------------------------------------------------LGTLGTNFG  356 (692)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             -----------------------------------------------------------------------cccccCCCC
Confidence                                                                                   002379999


Q ss_pred             CCCCCCCCCCCCCCCCceeccCCceeecccCCCCCCccccCccccccCchhhhhHHHHHHHHHHHHhCCCCCHHHHHHHH
Q 005034          582 PDPEDSFLDDADIMKPNLVAPGNSIWAAWSSLGTDSVEFQGESFAMMSGTSMAAPHIAGLAALIKQKFPSFSPSAIASAL  661 (718)
Q Consensus       582 pt~~~~~~~~~g~~KPDI~APG~~I~Sa~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~q~~p~ls~~~ik~~L  661 (718)
                      |.+             ||+|||++|+|+++..        ++.|..++|||||||||||++|||+|++|+|+++|||++|
T Consensus       357 ~~v-------------DI~APG~~I~St~~~~--------~~~y~~~SGTSmAAPhVAG~aALlls~~P~ltp~qVk~~L  415 (692)
T 2p4e_P          357 RCV-------------DLFAPGEDIIGASSDC--------STCFVSQSGTSQAAAHVAGIAAMMLSAEPELTLAELRQRL  415 (692)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             Cce-------------eEEecCCcEEeeccCC--------CCceEeccchHHHHHHHHHHHHHHHHHCCCCCHHHHHHHH
Confidence            755             9999999999998531        2478999999999999999999999999999999999999


Q ss_pred             HhcccccccCCCccccccccCCCCCCC-CCCCCCcccccc--ccccccCC
Q 005034          662 STSATLYDKNGGPIMAQRAYAKPDENQ-SPATPFDMGSGF--VNATASLD  708 (718)
Q Consensus       662 ~~TA~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~G~G~--vn~~~Al~  708 (718)
                      ++||.+....+.+++.......|..-. .+.....+|+|+  .++..+..
T Consensus       416 ~~tA~~~~~~~~~~p~~~~~~tpN~l~~~~~~~~~~G~~l~~~~~w~~~s  465 (692)
T 2p4e_P          416 IHFSAKDVINEAWFPEDQRVLTPNLVAALPPSTHGAGWQLFCRTVWSAHS  465 (692)
T ss_dssp             --------------------------------------------------
T ss_pred             HHhccccccCCCCCccccCCCCcceeecCCCccccCCCCccccccccccC
Confidence            999976433221111100000111000 111345678888  77777764


No 9  
>1dbi_A AK.1 serine protease; hydrolase; 1.80A {Bacillus SP} SCOP: c.41.1.1
Probab=100.00  E-value=2.6e-52  Score=434.70  Aligned_cols=257  Identities=32%  Similarity=0.445  Sum_probs=210.5

Q ss_pred             cccccCCCCCCCCCcEEEEEccccCCCCCCCcCCCCCCCCCCCCCCCccccccCCCCCCCCCceeeeeeecchhhhhcCc
Q 005034          175 AWIQEGGYETAGEGVVIGFIDTGIDPTHPSFADDASEHSYPVPSHFSGICEVTRDFPSGSCNRKLIGARHFAASAITRGI  254 (718)
Q Consensus       175 ~w~~~~~~~~~G~gv~VaVIDtGid~~Hp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~  254 (718)
                      +|..    +..|+||+|||||||||++||+|.++.                              +..++|.+.      
T Consensus        23 aw~~----~~g~~gv~VaViDtGvd~~hp~l~~~~------------------------------~~~~~~~~~------   62 (280)
T 1dbi_A           23 AWDV----TKGSSGQEIAVIDTGVDYTHPDLDGKV------------------------------IKGYDFVDN------   62 (280)
T ss_dssp             HTTT----CCCCTTCEEEEEESCCCTTSTTTTTTE------------------------------EEEEETTTT------
T ss_pred             HHhh----cCCCCCCEEEEEeCCcCCCChhhccCc------------------------------ccceeccCC------
Confidence            6665    566779999999999999999998642                              333444432      


Q ss_pred             cCCCCCCCCCCCCCCCccccccccccCCCCCccccccccCccccccCCceEEEEeecccCCCCCHHHHHHHHHHHHHCCC
Q 005034          255 FNSSQDYASPFDGDGHGSHTASVAAGNHGIPVVVTGHHFGNASGMAPRSHIAVYKALYKSFGGFAADVVAAIDQAAQDGV  334 (718)
Q Consensus       255 ~~~~~~~~~~~d~~gHGThVAGiiag~~~~~~~~~g~~~~~~~GvAp~A~i~~~kv~~~~~~~~~~~i~~ai~~a~~~g~  334 (718)
                            ...+.|..+|||||||||+|..+++        .++.||||+|+|+.+|+++.++.+..++++++|+|++++|+
T Consensus        63 ------~~~~~d~~gHGT~vAgiia~~~~~~--------~g~~GvAp~a~l~~~kv~~~~g~~~~~~i~~ai~~a~~~g~  128 (280)
T 1dbi_A           63 ------DYDPMDLNNHGTHVAGIAAAETNNA--------TGIAGMAPNTRILAVRALDRNGSGTLSDIADAIIYAADSGA  128 (280)
T ss_dssp             ------BSCCCCSSSHHHHHHHHHHCCCSSS--------SSCCCSSSSCEEEEEECCCTTSCCCHHHHHHHHHHHHHTTC
T ss_pred             ------CCCCCCCCCcHHHHHHHHhCcCCCC--------CcceEeCCCCEEEEEEEECCCCCcCHHHHHHHHHHHHHCCC
Confidence                  1345688999999999999975432        34689999999999999988666889999999999999999


Q ss_pred             CEEEEcCCCCCCCCCCCccccHHHHHHHHHHHCCCEEEEecCCCCCCCCCCCCCCCceEEEeeeccCCceeeeEEeCCCc
Q 005034          335 DIISLSITPNRRPPGIATFFNPIDMALLSAAKAGIFVVQAAGNTGPSPKSMSSFSPWIFTVGAASHDRIYTNSIILGNSL  414 (718)
Q Consensus       335 ~ViN~S~G~~~~~~~~~~~~~~~~~a~~~a~~~GilvV~AAGN~g~~~~~~~~~~~~vitVgA~~~~~~~~~~~~~~~~~  414 (718)
                      +|||||||....       ...++++++.+.++|++||+||||+|.....+|+..+++|+|||++.+             
T Consensus       129 ~Vin~S~G~~~~-------~~~~~~ai~~a~~~gilvV~AAGN~g~~~~~~Pa~~~~vi~Vga~~~~-------------  188 (280)
T 1dbi_A          129 EVINLSLGCDCH-------TTTLENAVNYAWNKGSVVVAAAGNNGSSTTFEPASYENVIAVGAVDQY-------------  188 (280)
T ss_dssp             SEEEECCSSCCC-------CHHHHHHHHHHHHTTCEEEEECCBC---------CCTTSEEEEEECTT-------------
T ss_pred             CEEEeCCCCCCC-------CHHHHHHHHHHHHCCCEEEEECCCCCCCCCCCccccCCeEEEEeeCCC-------------
Confidence            999999997532       367888999999999999999999999888889999999999996432             


Q ss_pred             eEeeeccCCCCCceEEEEEcccccCCCCcccCCccccccCCCCCCccCCcCceEEEEEeecccccCcchHHHHHHHHHhC
Q 005034          415 TISGVGLAPGTDKMYTLISALHALNNNTTTTDDMYVGECQDSSNFNQDLVQGNLLICSYSIRFVLGLSTIKQAFETAKNL  494 (718)
Q Consensus       415 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~g~i~~~~~~~~~~~~~~~~~~~~~~~~~~  494 (718)
                                                                                                      
T Consensus       189 --------------------------------------------------------------------------------  188 (280)
T 1dbi_A          189 --------------------------------------------------------------------------------  188 (280)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             CCcEEEEEeCCCccCcccCCCCCCCCeEEecCcchHHHHHHHHhccCCCccccceeeeeceeEEEecccccccCCCCCce
Q 005034          495 SAAGIVFYMDPFVIGFQLNPTPMKMPGIIIPSPDDSKILLQYYNSSLERDEVTKKIIKFGAVACILGGLKANFSNSAPKI  574 (718)
Q Consensus       495 ga~~vi~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  574 (718)
                                                                                                   +.+
T Consensus       189 -----------------------------------------------------------------------------~~~  191 (280)
T 1dbi_A          189 -----------------------------------------------------------------------------DRL  191 (280)
T ss_dssp             -----------------------------------------------------------------------------SCB
T ss_pred             -----------------------------------------------------------------------------CCc
Confidence                                                                                         236


Q ss_pred             eccccCCCCCCCCCCCCCCCCCCceeccCCceeecccCCCCCCccccCccccccCchhhhhHHHHHHHHHHHHhCCCCCH
Q 005034          575 MYYSARGPDPEDSFLDDADIMKPNLVAPGNSIWAAWSSLGTDSVEFQGESFAMMSGTSMAAPHIAGLAALIKQKFPSFSP  654 (718)
Q Consensus       575 a~fSs~Gpt~~~~~~~~~g~~KPDI~APG~~I~Sa~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~q~~p~ls~  654 (718)
                      +.||++||+.             ||+|||.+|+++.          .++.|..++|||||||||||++|||++  |.+++
T Consensus       192 ~~~S~~G~~~-------------dv~ApG~~i~s~~----------~~~~~~~~sGTS~AaP~vaG~aAll~~--p~~t~  246 (280)
T 1dbi_A          192 ASFSNYGTWV-------------DVVAPGVDIVSTI----------TGNRYAYMSGTSMASPHVAGLAALLAS--QGRNN  246 (280)
T ss_dssp             CTTBCCSTTC-------------CEEEECSSEEEEE----------TTTEEEEECSHHHHHHHHHHHHHHHHH--TTCCH
T ss_pred             CCCCCCCCCc-------------eEEEecCCeEeec----------CCCCEEEccCHHHHHHHHHHHHHHHHC--CCCCH
Confidence            7899999876             8999999999998          566899999999999999999999987  89999


Q ss_pred             HHHHHHHHhcccccccCCCccccccccCCCCCCCCCCCCCccccccccccccCC
Q 005034          655 SAIASALSTSATLYDKNGGPIMAQRAYAKPDENQSPATPFDMGSGFVNATASLD  708 (718)
Q Consensus       655 ~~ik~~L~~TA~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~G~vn~~~Al~  708 (718)
                      .|||++|++||+++...                     ...+|+|+||+.+||+
T Consensus       247 ~~v~~~L~~ta~~~~~~---------------------~~~~G~G~vn~~~A~~  279 (280)
T 1dbi_A          247 IEIRQAIEQTADKISGT---------------------GTYFKYGRINSYNAVT  279 (280)
T ss_dssp             HHHHHHHHHTSBCCTTB---------------------TTTBSSEECCHHHHHT
T ss_pred             HHHHHHHHHhCccCCCC---------------------CCcccCCEECHHHHhc
Confidence            99999999999987532                     2469999999999986


No 10 
>1thm_A Thermitase; hydrolase(serine protease); 1.37A {Thermoactinomyces vulgaris} SCOP: c.41.1.1 PDB: 2tec_E 1tec_E 3tec_E
Probab=100.00  E-value=2.7e-52  Score=434.58  Aligned_cols=261  Identities=31%  Similarity=0.484  Sum_probs=220.8

Q ss_pred             cCCCcccccccCCCCCCCCCcEEEEEccccCCCCCCCcCCCCCCCCCCCCCCCccccccCCCCCCCCCceeeeeeecchh
Q 005034          169 LGLPQGAWIQEGGYETAGEGVVIGFIDTGIDPTHPSFADDASEHSYPVPSHFSGICEVTRDFPSGSCNRKLIGARHFAAS  248 (718)
Q Consensus       169 ~~~~~~~w~~~~~~~~~G~gv~VaVIDtGid~~Hp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~  248 (718)
                      ++++. +|..     .+|+||+|||||||||++||+|.++.                              +..++|.+.
T Consensus        18 i~~~~-aw~~-----~~G~gv~VaViDtGvd~~h~~l~~~~------------------------------~~~~~~~~~   61 (279)
T 1thm_A           18 IQAPQ-AWDI-----AEGSGAKIAIVDTGVQSNHPDLAGKV------------------------------VGGWDFVDN   61 (279)
T ss_dssp             TTHHH-HHTT-----CCCTTCEEEEEESCCCTTCTTTTTTE------------------------------EEEEETTTT
T ss_pred             CChHH-HHhc-----CCCCCCEEEEEccCCCCCCcchhcCc------------------------------cccccccCC
Confidence            33334 7876     47999999999999999999999642                              333444432


Q ss_pred             hhhcCccCCCCCCCCCCCCCCCccccccccccCCCCCccccccccCccccccCCceEEEEeecccCCCCCHHHHHHHHHH
Q 005034          249 AITRGIFNSSQDYASPFDGDGHGSHTASVAAGNHGIPVVVTGHHFGNASGMAPRSHIAVYKALYKSFGGFAADVVAAIDQ  328 (718)
Q Consensus       249 ~~~~~~~~~~~~~~~~~d~~gHGThVAGiiag~~~~~~~~~g~~~~~~~GvAp~A~i~~~kv~~~~~~~~~~~i~~ai~~  328 (718)
                                  ...+.|..+|||||||||+|..+++        .++.||||+|+|+.+|+++..+.+...+++++|+|
T Consensus        62 ------------~~~~~d~~gHGT~vAgiia~~~~n~--------~g~~GvAp~a~l~~~~v~~~~g~~~~~~~~~ai~~  121 (279)
T 1thm_A           62 ------------DSTPQNGNGHGTHCAGIAAAVTNNS--------TGIAGTAPKASILAVRVLDNSGSGTWTAVANGITY  121 (279)
T ss_dssp             ------------BSCCCCSSSHHHHHHHHHHCCCSSS--------SSCCCSSTTCEEEEEECSCTTSCCCHHHHHHHHHH
T ss_pred             ------------CCCCCCCCCcHHHHHHHHhCccCCC--------CccEEeCCCCEEEEEEeeCCCCCccHHHHHHHHHH
Confidence                        1345678999999999999976433        34689999999999999988667888999999999


Q ss_pred             HHHCCCCEEEEcCCCCCCCCCCCccccHHHHHHHHHHHCCCEEEEecCCCCCCCCCCCCCCCceEEEeeeccCCceeeeE
Q 005034          329 AAQDGVDIISLSITPNRRPPGIATFFNPIDMALLSAAKAGIFVVQAAGNTGPSPKSMSSFSPWIFTVGAASHDRIYTNSI  408 (718)
Q Consensus       329 a~~~g~~ViN~S~G~~~~~~~~~~~~~~~~~a~~~a~~~GilvV~AAGN~g~~~~~~~~~~~~vitVgA~~~~~~~~~~~  408 (718)
                      |++++++|||||||....       ...++++++.+.++|++||+||||+|.....+|+..+++|+|||++.+       
T Consensus       122 a~~~g~~Vin~S~G~~~~-------~~~l~~ai~~a~~~gvlvV~AAGN~g~~~~~~Pa~~~~vi~Vga~~~~-------  187 (279)
T 1thm_A          122 AADQGAKVISLSLGGTVG-------NSGLQQAVNYAWNKGSVVVAAAGNAGNTAPNYPAYYSNAIAVASTDQN-------  187 (279)
T ss_dssp             HHHTTCSEEEECCCBSSC-------CHHHHHHHHHHHHTTCEEEEECCSSSSCCCCBTTTSTTEEEEEEECTT-------
T ss_pred             HHHCCCCEEEEecCCCCC-------CHHHHHHHHHHHHCCCEEEEeCCCCCCCCCCCcccCCCeEEEEEeCCC-------
Confidence            999999999999997542       367888999999999999999999999888899999999999996432       


Q ss_pred             EeCCCceEeeeccCCCCCceEEEEEcccccCCCCcccCCccccccCCCCCCccCCcCceEEEEEeecccccCcchHHHHH
Q 005034          409 ILGNSLTISGVGLAPGTDKMYTLISALHALNNNTTTTDDMYVGECQDSSNFNQDLVQGNLLICSYSIRFVLGLSTIKQAF  488 (718)
Q Consensus       409 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~g~i~~~~~~~~~~~~~~~~~~~~  488 (718)
                                                                                                      
T Consensus       188 --------------------------------------------------------------------------------  187 (279)
T 1thm_A          188 --------------------------------------------------------------------------------  187 (279)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             HHHHhCCCcEEEEEeCCCccCcccCCCCCCCCeEEecCcchHHHHHHHHhccCCCccccceeeeeceeEEEecccccccC
Q 005034          489 ETAKNLSAAGIVFYMDPFVIGFQLNPTPMKMPGIIIPSPDDSKILLQYYNSSLERDEVTKKIIKFGAVACILGGLKANFS  568 (718)
Q Consensus       489 ~~~~~~ga~~vi~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  568 (718)
                                                                                                      
T Consensus       188 --------------------------------------------------------------------------------  187 (279)
T 1thm_A          188 --------------------------------------------------------------------------------  187 (279)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             CCCCceeccccCCCCCCCCCCCCCCCCCCceeccCCceeecccCCCCCCccccCccccccCchhhhhHHHHHHHHHHHHh
Q 005034          569 NSAPKIMYYSARGPDPEDSFLDDADIMKPNLVAPGNSIWAAWSSLGTDSVEFQGESFAMMSGTSMAAPHIAGLAALIKQK  648 (718)
Q Consensus       569 ~~~~~~a~fSs~Gpt~~~~~~~~~g~~KPDI~APG~~I~Sa~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~q~  648 (718)
                         +.++.||++||..             ||+|||.+|++++          +++.|..++|||||||||||++|||  +
T Consensus       188 ---~~~~~fS~~G~~~-------------dv~APG~~i~s~~----------~~~~~~~~sGTS~AaP~VaG~aAll--~  239 (279)
T 1thm_A          188 ---DNKSSFSTYGSWV-------------DVAAPGSSIYSTY----------PTSTYASLSGTSMATPHVAGVAGLL--A  239 (279)
T ss_dssp             ---SCBCTTCCCCTTC-------------CEEEECSSEEEEE----------TTTEEEEECSHHHHHHHHHHHHHHH--H
T ss_pred             ---CCcCCcCCCCCce-------------EEEEcCCCeEEEe----------CCCCEEEcccHHHHHHHHHHHHHHH--H
Confidence               2357899999876             8999999999998          5668999999999999999999999  5


Q ss_pred             CCCCCHHHHHHHHHhcccccccCCCccccccccCCCCCCCCCCCCCccccccccccccCC
Q 005034          649 FPSFSPSAIASALSTSATLYDKNGGPIMAQRAYAKPDENQSPATPFDMGSGFVNATASLD  708 (718)
Q Consensus       649 ~p~ls~~~ik~~L~~TA~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~G~vn~~~Al~  708 (718)
                      +|.++++|||++|++||++++..+                     ..||+|+||+.+||+
T Consensus       240 ~p~~t~~~v~~~L~~ta~~~~~~~---------------------~~~G~G~vn~~~A~~  278 (279)
T 1thm_A          240 SQGRSASNIRAAIENTADKISGTG---------------------TYWAKGRVNAYKAVQ  278 (279)
T ss_dssp             TTTCCHHHHHHHHHHTCBCCTTBT---------------------TTBSSEECCHHHHHH
T ss_pred             CCCcCHHHHHHHHHHhCccCCCCC---------------------ccccCCeeCHHHHhc
Confidence            899999999999999999876432                     368999999999985


No 11 
>1gci_A Subtilisin; hydrolase, serine protease; 0.78A {Bacillus lentus} SCOP: c.41.1.1 PDB: 1jea_A 1ndq_A 1svn_A 1tk2_A* 3bx1_A 1ah2_A 1iav_A* 1c9m_A* 1wsd_A 1mpt_A 1ndu_A 1c9j_A 1q5p_A* 1st3_A 1c9n_A*
Probab=100.00  E-value=2.7e-52  Score=431.78  Aligned_cols=254  Identities=33%  Similarity=0.492  Sum_probs=216.7

Q ss_pred             cccccCCCCCCCCCcEEEEEccccCCCCCCCcCCCCCCCCCCCCCCCccccccCCCCCCCCCceeeeeeecchhhhhcCc
Q 005034          175 AWIQEGGYETAGEGVVIGFIDTGIDPTHPSFADDASEHSYPVPSHFSGICEVTRDFPSGSCNRKLIGARHFAASAITRGI  254 (718)
Q Consensus       175 ~w~~~~~~~~~G~gv~VaVIDtGid~~Hp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~  254 (718)
                      +|..    +++|+||+|+|||||| .+||+|+.                                ...++|..+      
T Consensus        16 a~~~----g~~G~gv~VaViDtGi-~~h~~l~~--------------------------------~~~~~~~~~------   52 (269)
T 1gci_A           16 AHNR----GLTGSGVKVAVLDTGI-STHPDLNI--------------------------------RGGASFVPG------   52 (269)
T ss_dssp             HHHT----TCSCTTCEEEEEESCC-CCCTTCCE--------------------------------EEEEECSTT------
T ss_pred             HHhc----CCCCCCCEEEEECCCC-CCCHhhcc--------------------------------cCCcccCCC------
Confidence            6765    7899999999999999 89999942                                112223221      


Q ss_pred             cCCCCCCCCCCCCCCCccccccccccCCCCCccccccccCccccccCCceEEEEeecccCCCCCHHHHHHHHHHHHHCCC
Q 005034          255 FNSSQDYASPFDGDGHGSHTASVAAGNHGIPVVVTGHHFGNASGMAPRSHIAVYKALYKSFGGFAADVVAAIDQAAQDGV  334 (718)
Q Consensus       255 ~~~~~~~~~~~d~~gHGThVAGiiag~~~~~~~~~g~~~~~~~GvAp~A~i~~~kv~~~~~~~~~~~i~~ai~~a~~~g~  334 (718)
                            ...+.|..+|||||||||+|..+.         .++.||||+|+|+.+|+++..+.+..++++++|+|++++++
T Consensus        53 ------~~~~~d~~gHGT~vAgiia~~~~~---------~~~~GvAp~a~l~~~~v~~~~g~~~~~~~~~ai~~a~~~~~  117 (269)
T 1gci_A           53 ------EPSTQDGNGHGTHVAGTIAALNNS---------IGVLGVAPSAELYAVKVLGASGSGSVSSIAQGLEWAGNNGM  117 (269)
T ss_dssp             ------CCSCSCSSSHHHHHHHHHHCCCSS---------SBCCCSSTTCEEEEEECBCTTSCBCHHHHHHHHHHHHHTTC
T ss_pred             ------CCCCCCCCCChHHHHHHHhcCcCC---------CCcEEeCCCCEEEEEEeECCCCCcCHHHHHHHHHHHHHCCC
Confidence                  123467889999999999997421         34689999999999999988666888999999999999999


Q ss_pred             CEEEEcCCCCCCCCCCCccccHHHHHHHHHHHCCCEEEEecCCCCCCCCCCCCCCCceEEEeeeccCCceeeeEEeCCCc
Q 005034          335 DIISLSITPNRRPPGIATFFNPIDMALLSAAKAGIFVVQAAGNTGPSPKSMSSFSPWIFTVGAASHDRIYTNSIILGNSL  414 (718)
Q Consensus       335 ~ViN~S~G~~~~~~~~~~~~~~~~~a~~~a~~~GilvV~AAGN~g~~~~~~~~~~~~vitVgA~~~~~~~~~~~~~~~~~  414 (718)
                      +|||||||....       ...++++++.+.++|++||+||||+|.....+|+..+++|+|||++.+             
T Consensus       118 ~Vin~S~G~~~~-------~~~~~~ai~~a~~~gv~vV~AaGN~g~~~~~~Pa~~~~vi~Vga~~~~-------------  177 (269)
T 1gci_A          118 HVANLSLGSPSP-------SATLEQAVNSATSRGVLVVAASGNSGAGSISYPARYANAMAVGATDQN-------------  177 (269)
T ss_dssp             SEEEECCCBSSC-------CHHHHHHHHHHHHTTCEEEEECCSSCCSSCCBTTTSTTEEEEEEECTT-------------
T ss_pred             eEEEeCCCCCCC-------CHHHHHHHHHHHHCCCEEEEecCCCCCCCCcCCccCCCeEEEEeecCC-------------
Confidence            999999997542       367888999999999999999999999888899999999999996432             


Q ss_pred             eEeeeccCCCCCceEEEEEcccccCCCCcccCCccccccCCCCCCccCCcCceEEEEEeecccccCcchHHHHHHHHHhC
Q 005034          415 TISGVGLAPGTDKMYTLISALHALNNNTTTTDDMYVGECQDSSNFNQDLVQGNLLICSYSIRFVLGLSTIKQAFETAKNL  494 (718)
Q Consensus       415 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~g~i~~~~~~~~~~~~~~~~~~~~~~~~~~  494 (718)
                                                                                                      
T Consensus       178 --------------------------------------------------------------------------------  177 (269)
T 1gci_A          178 --------------------------------------------------------------------------------  177 (269)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             CCcEEEEEeCCCccCcccCCCCCCCCeEEecCcchHHHHHHHHhccCCCccccceeeeeceeEEEecccccccCCCCCce
Q 005034          495 SAAGIVFYMDPFVIGFQLNPTPMKMPGIIIPSPDDSKILLQYYNSSLERDEVTKKIIKFGAVACILGGLKANFSNSAPKI  574 (718)
Q Consensus       495 ga~~vi~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  574 (718)
                                                                                                   +.+
T Consensus       178 -----------------------------------------------------------------------------~~~  180 (269)
T 1gci_A          178 -----------------------------------------------------------------------------NNR  180 (269)
T ss_dssp             -----------------------------------------------------------------------------SCB
T ss_pred             -----------------------------------------------------------------------------CCC
Confidence                                                                                         236


Q ss_pred             eccccCCCCCCCCCCCCCCCCCCceeccCCceeecccCCCCCCccccCccccccCchhhhhHHHHHHHHHHHHhCCCCCH
Q 005034          575 MYYSARGPDPEDSFLDDADIMKPNLVAPGNSIWAAWSSLGTDSVEFQGESFAMMSGTSMAAPHIAGLAALIKQKFPSFSP  654 (718)
Q Consensus       575 a~fSs~Gpt~~~~~~~~~g~~KPDI~APG~~I~Sa~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~q~~p~ls~  654 (718)
                      +.||++||.+             ||+|||.+|++++          +++.|..++|||||||||||++|||+|++|+|++
T Consensus       181 ~~~S~~G~~~-------------di~APG~~i~s~~----------~~~~~~~~sGTS~AaP~vaG~aAll~~~~p~~t~  237 (269)
T 1gci_A          181 ASFSQYGAGL-------------DIVAPGVNVQSTY----------PGSTYASLNGTSMATPHVAGAAALVKQKNPSWSN  237 (269)
T ss_dssp             CTTCCCSTTE-------------EEEEECSSEEEEE----------TTTEEEEECSHHHHHHHHHHHHHHHHHHCTTCCH
T ss_pred             CCCCCCCCCc-------------ceEecCCCeEeec----------CCCCEEEcCcHHHHHHHHHHHHHHHHHhCCCCCH
Confidence            7899999876             9999999999998          5668999999999999999999999999999999


Q ss_pred             HHHHHHHHhcccccccCCCccccccccCCCCCCCCCCCCCccccccccccccCC
Q 005034          655 SAIASALSTSATLYDKNGGPIMAQRAYAKPDENQSPATPFDMGSGFVNATASLD  708 (718)
Q Consensus       655 ~~ik~~L~~TA~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~G~vn~~~Al~  708 (718)
                      .|||++|++||+++..                      +..||+|+||+.+||+
T Consensus       238 ~~v~~~L~~tA~~~g~----------------------~~~~G~G~vn~~~A~~  269 (269)
T 1gci_A          238 VQIRNHLKNTATSLGS----------------------TNLYGSGLVNAEAATR  269 (269)
T ss_dssp             HHHHHHHHHTSBCCSC----------------------HHHHTTCBCCHHHHTC
T ss_pred             HHHHHHHHHhCccCCC----------------------CCCcccCccCHHHHcC
Confidence            9999999999998741                      4579999999999985


No 12 
>1r0r_E Subtilisin carlsberg; high resolution, serine protease, protein inhibitor, hydrolase; 1.10A {Bacillus licheniformis} SCOP: c.41.1.1 PDB: 1af4_A* 1be8_A* 1bfk_A 1bfu_A 1be6_A 1oyv_A 1cse_E 1sbc_A 1sca_A 1scb_A 1scd_A 2sec_E 2wuv_A 2wuw_E 1yu6_A 1scn_E* 1c3l_A 1avt_A* 1av7_A* 1sel_A ...
Probab=100.00  E-value=2.2e-52  Score=434.10  Aligned_cols=255  Identities=32%  Similarity=0.511  Sum_probs=215.0

Q ss_pred             cccccCCCCCCCCCcEEEEEccccCCCCCCCcCCCCCCCCCCCCCCCccccccCCCCCCCCCceeeeeeecchhhhhcCc
Q 005034          175 AWIQEGGYETAGEGVVIGFIDTGIDPTHPSFADDASEHSYPVPSHFSGICEVTRDFPSGSCNRKLIGARHFAASAITRGI  254 (718)
Q Consensus       175 ~w~~~~~~~~~G~gv~VaVIDtGid~~Hp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~  254 (718)
                      +|..    +++|+||+|||||||||++||+|+.                                ...++|..+      
T Consensus        16 ~~~~----g~~G~gv~VaViDtGid~~h~~l~~--------------------------------~~g~~~~~~------   53 (274)
T 1r0r_E           16 VQAQ----GFKGANVKVAVLDTGIQASHPDLNV--------------------------------VGGASFVAG------   53 (274)
T ss_dssp             HHHH----TCSCTTCEEEEEESCCCTTCTTCCE--------------------------------EEEEECSTT------
T ss_pred             HHhc----CCCCCCCEEEEEcCCCCCCCHhHcC--------------------------------CCCccccCC------
Confidence            6766    7899999999999999999999942                                112222221      


Q ss_pred             cCCCCCCCCCCCCCCCccccccccccCCCCCccccccccCccccccCCceEEEEeecccCCCCCHHHHHHHHHHHHHCCC
Q 005034          255 FNSSQDYASPFDGDGHGSHTASVAAGNHGIPVVVTGHHFGNASGMAPRSHIAVYKALYKSFGGFAADVVAAIDQAAQDGV  334 (718)
Q Consensus       255 ~~~~~~~~~~~d~~gHGThVAGiiag~~~~~~~~~g~~~~~~~GvAp~A~i~~~kv~~~~~~~~~~~i~~ai~~a~~~g~  334 (718)
                            ...+.|..+|||||||||+|..+.         .++.||||+|+|+.+|+++..+.+..++++++|+|++++++
T Consensus        54 ------~~~~~d~~gHGT~vAgiia~~~~~---------~g~~GvAp~a~l~~~~v~~~~g~~~~~~i~~ai~~a~~~~~  118 (274)
T 1r0r_E           54 ------EAYNTDGNGHGTHVAGTVAALDNT---------TGVLGVAPSVSLYAVKVLNSSGSGSYSGIVSGIEWATTNGM  118 (274)
T ss_dssp             ------CCTTCCSSSHHHHHHHHHHCCSSS---------SBCCCSSTTSEEEEEECSCTTSEECHHHHHHHHHHHHHTTC
T ss_pred             ------CCCCCCCCCCHHHHHHHHHccCCC---------CceEEECCCCEEEEEEEECCCCCccHHHHHHHHHHHHHcCC
Confidence                  122457889999999999997421         34689999999999999987666788999999999999999


Q ss_pred             CEEEEcCCCCCCCCCCCccccHHHHHHHHHHHCCCEEEEecCCCCCC----CCCCCCCCCceEEEeeeccCCceeeeEEe
Q 005034          335 DIISLSITPNRRPPGIATFFNPIDMALLSAAKAGIFVVQAAGNTGPS----PKSMSSFSPWIFTVGAASHDRIYTNSIIL  410 (718)
Q Consensus       335 ~ViN~S~G~~~~~~~~~~~~~~~~~a~~~a~~~GilvV~AAGN~g~~----~~~~~~~~~~vitVgA~~~~~~~~~~~~~  410 (718)
                      +|||||||....       ...++++++.+.++|++||+||||+|..    ...+|+..+++|+||+++.+         
T Consensus       119 ~Vin~S~G~~~~-------~~~~~~ai~~a~~~gi~vV~AAGN~g~~~~~~~~~~Pa~~~~vi~Vga~~~~---------  182 (274)
T 1r0r_E          119 DVINMSLGGASG-------STAMKQAVDNAYARGVVVVAAAGNSGNSGSTNTIGYPAKYDSVIAVGAVDSN---------  182 (274)
T ss_dssp             SEEEECEEBSSC-------CHHHHHHHHHHHHTTCEEEEECCSCCCCTTCCCCCBTTTSTTSEEEEEECTT---------
T ss_pred             CEEEeCCCCCCC-------cHHHHHHHHHHHHCCCEEEEeCCCCCCCCCCccccCCCCCCcEEEEEEecCC---------
Confidence            999999997542       3678889999999999999999999976    34578889999999996432         


Q ss_pred             CCCceEeeeccCCCCCceEEEEEcccccCCCCcccCCccccccCCCCCCccCCcCceEEEEEeecccccCcchHHHHHHH
Q 005034          411 GNSLTISGVGLAPGTDKMYTLISALHALNNNTTTTDDMYVGECQDSSNFNQDLVQGNLLICSYSIRFVLGLSTIKQAFET  490 (718)
Q Consensus       411 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~g~i~~~~~~~~~~~~~~~~~~~~~~  490 (718)
                                                                                                      
T Consensus       183 --------------------------------------------------------------------------------  182 (274)
T 1r0r_E          183 --------------------------------------------------------------------------------  182 (274)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             HHhCCCcEEEEEeCCCccCcccCCCCCCCCeEEecCcchHHHHHHHHhccCCCccccceeeeeceeEEEecccccccCCC
Q 005034          491 AKNLSAAGIVFYMDPFVIGFQLNPTPMKMPGIIIPSPDDSKILLQYYNSSLERDEVTKKIIKFGAVACILGGLKANFSNS  570 (718)
Q Consensus       491 ~~~~ga~~vi~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  570 (718)
                                                                                                      
T Consensus       183 --------------------------------------------------------------------------------  182 (274)
T 1r0r_E          183 --------------------------------------------------------------------------------  182 (274)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             CCceeccccCCCCCCCCCCCCCCCCCCceeccCCceeecccCCCCCCccccCccccccCchhhhhHHHHHHHHHHHHhCC
Q 005034          571 APKIMYYSARGPDPEDSFLDDADIMKPNLVAPGNSIWAAWSSLGTDSVEFQGESFAMMSGTSMAAPHIAGLAALIKQKFP  650 (718)
Q Consensus       571 ~~~~a~fSs~Gpt~~~~~~~~~g~~KPDI~APG~~I~Sa~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~q~~p  650 (718)
                       +.++.||++||.+             ||+|||.+|++++          +++.|..++|||||||||||++|||+|++|
T Consensus       183 -~~~~~~S~~G~~~-------------di~APG~~i~s~~----------~~~~~~~~sGTS~AaP~vaG~aAll~~~~p  238 (274)
T 1r0r_E          183 -SNRASFSSVGAEL-------------EVMAPGAGVYSTY----------PTNTYATLNGTSMASPHVAGAAALILSKHP  238 (274)
T ss_dssp             -SCBCTTCCCSTTE-------------EEEEECSSEEEEE----------TTTEEEEECSHHHHHHHHHHHHHHHHHHST
T ss_pred             -CCcCccCCCCCCc-------------eEEeCCCCeEeec----------CCCCEEEeccHHHHHHHHHHHHHHHHHHCC
Confidence             2357899999865             9999999999998          566899999999999999999999999999


Q ss_pred             CCCHHHHHHHHHhcccccccCCCccccccccCCCCCCCCCCCCCccccccccccccCC
Q 005034          651 SFSPSAIASALSTSATLYDKNGGPIMAQRAYAKPDENQSPATPFDMGSGFVNATASLD  708 (718)
Q Consensus       651 ~ls~~~ik~~L~~TA~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~G~vn~~~Al~  708 (718)
                      ++++.|||++|++||+++..                      +..||+|+||+.+||+
T Consensus       239 ~lt~~~v~~~L~~tA~~~g~----------------------~~~~G~G~~~~~~A~~  274 (274)
T 1r0r_E          239 NLSASQVRNRLSSTATYLGS----------------------SFYYGKGLINVEAAAQ  274 (274)
T ss_dssp             TCCHHHHHHHHHHTCBCCSC----------------------HHHHTTCBCCHHHHTC
T ss_pred             CCCHHHHHHHHHHhCcccCC----------------------CCCcccCccCHHHHhC
Confidence            99999999999999998741                      4579999999999986


No 13 
>1to2_E Subtilisin BPN'; serine protease, hydrolase; HET: CIT 15P; 1.30A {Bacillus amyloliquefaciens} SCOP: c.41.1.1 PDB: 1tm1_E* 1tm3_E* 1tm4_E* 1lw6_E* 1tm7_E* 1tmg_E* 1to1_E* 1tm5_E* 1y1k_E* 1y33_E* 1y34_E* 1y3b_E* 1y3c_E* 1y3d_E* 1y3f_E* 1y48_E* 1y4a_E* 1y4d_E 1sup_A* 1sib_E ...
Probab=100.00  E-value=1.3e-51  Score=429.67  Aligned_cols=257  Identities=30%  Similarity=0.459  Sum_probs=215.7

Q ss_pred             cccccCCCCCCCCCcEEEEEccccCCCCCCCcCCCCCCCCCCCCCCCccccccCCCCCCCCCceeeeeeecchhhhhcCc
Q 005034          175 AWIQEGGYETAGEGVVIGFIDTGIDPTHPSFADDASEHSYPVPSHFSGICEVTRDFPSGSCNRKLIGARHFAASAITRGI  254 (718)
Q Consensus       175 ~w~~~~~~~~~G~gv~VaVIDtGid~~Hp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~  254 (718)
                      +|..    +++|+||+|||||||||++||+|+..                                ..++|...      
T Consensus        16 ~~~~----g~~G~gv~VaViDtGid~~h~~l~~~--------------------------------~g~~~~~~------   53 (281)
T 1to2_E           16 LHSQ----GYTGSNVKVAVIDSGIDSSHPDLKVA--------------------------------GGASMVPS------   53 (281)
T ss_dssp             HHHH----TCSCTTCEEEEEESCCCTTCTTCCEE--------------------------------EEEECCTT------
T ss_pred             HHhc----CCCCCCCEEEEEcCCCCCCCHHHcCc--------------------------------CCccccCC------
Confidence            6766    78999999999999999999999521                                11222211      


Q ss_pred             cCCCCCCCCCCCCCCCccccccccccCCCCCccccccccCccccccCCceEEEEeecccCCCCCHHHHHHHHHHHHHCCC
Q 005034          255 FNSSQDYASPFDGDGHGSHTASVAAGNHGIPVVVTGHHFGNASGMAPRSHIAVYKALYKSFGGFAADVVAAIDQAAQDGV  334 (718)
Q Consensus       255 ~~~~~~~~~~~d~~gHGThVAGiiag~~~~~~~~~g~~~~~~~GvAp~A~i~~~kv~~~~~~~~~~~i~~ai~~a~~~g~  334 (718)
                           +.....|..+|||||||||+|..+.         .++.||||+|+|+.+|+++.++.+..++++++|+|++++++
T Consensus        54 -----~~~~~~d~~gHGT~vAgiia~~~~~---------~g~~GvAp~a~l~~~kv~~~~g~~~~~~i~~ai~~a~~~~~  119 (281)
T 1to2_E           54 -----ETNPFQDNNSHGTHVAGTVAALNNS---------IGVLGVAPSASLYAVKVLGADGSGQYSWIINGIEWAIANNM  119 (281)
T ss_dssp             -----CCCTTCCSSSHHHHHHHHHHCCSSS---------SSBCCSSTTSEEEEEECSCTTSEECHHHHHHHHHHHHHTTC
T ss_pred             -----CCCCCCCCCCcHHHHHHHHhccCCC---------CcceeeCCCCEEEEEEEeCCCCCccHHHHHHHHHHHHHCCC
Confidence                 1112357889999999999997421         34689999999999999987666788999999999999999


Q ss_pred             CEEEEcCCCCCCCCCCCccccHHHHHHHHHHHCCCEEEEecCCCCCC----CCCCCCCCCceEEEeeeccCCceeeeEEe
Q 005034          335 DIISLSITPNRRPPGIATFFNPIDMALLSAAKAGIFVVQAAGNTGPS----PKSMSSFSPWIFTVGAASHDRIYTNSIIL  410 (718)
Q Consensus       335 ~ViN~S~G~~~~~~~~~~~~~~~~~a~~~a~~~GilvV~AAGN~g~~----~~~~~~~~~~vitVgA~~~~~~~~~~~~~  410 (718)
                      +|||||||....       ...+.++++.+.++|++||+||||+|..    ...+|+..+++|+|||++.+         
T Consensus       120 ~Vin~S~G~~~~-------~~~~~~ai~~a~~~gi~vV~AAGN~g~~~~~~~~~~Pa~~~~vi~Vga~~~~---------  183 (281)
T 1to2_E          120 DVINMSLGGPSG-------SAALKAAVDKAVASGVVVVAAAGNEGTSGSSSTVGYPGKYPSVIAVGAVDSS---------  183 (281)
T ss_dssp             SEEEECEEBSCC-------CHHHHHHHHHHHHTTCEEEEECCSCCCCTTSCCCCBTTTSTTSEEEEEECTT---------
T ss_pred             cEEEECCcCCCC-------CHHHHHHHHHHHHCCCEEEEECCCCCCCCCCCccccCcCCCCEEEEEEecCC---------
Confidence            999999997542       3678889999999999999999999986    35578889999999996421         


Q ss_pred             CCCceEeeeccCCCCCceEEEEEcccccCCCCcccCCccccccCCCCCCccCCcCceEEEEEeecccccCcchHHHHHHH
Q 005034          411 GNSLTISGVGLAPGTDKMYTLISALHALNNNTTTTDDMYVGECQDSSNFNQDLVQGNLLICSYSIRFVLGLSTIKQAFET  490 (718)
Q Consensus       411 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~g~i~~~~~~~~~~~~~~~~~~~~~~  490 (718)
                                                                                                      
T Consensus       184 --------------------------------------------------------------------------------  183 (281)
T 1to2_E          184 --------------------------------------------------------------------------------  183 (281)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             HHhCCCcEEEEEeCCCccCcccCCCCCCCCeEEecCcchHHHHHHHHhccCCCccccceeeeeceeEEEecccccccCCC
Q 005034          491 AKNLSAAGIVFYMDPFVIGFQLNPTPMKMPGIIIPSPDDSKILLQYYNSSLERDEVTKKIIKFGAVACILGGLKANFSNS  570 (718)
Q Consensus       491 ~~~~ga~~vi~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  570 (718)
                                                                                                      
T Consensus       184 --------------------------------------------------------------------------------  183 (281)
T 1to2_E          184 --------------------------------------------------------------------------------  183 (281)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             CCceeccccCCCCCCCCCCCCCCCCCCceeccCCceeecccCCCCCCccccCccccccCchhhhhHHHHHHHHHHHHhCC
Q 005034          571 APKIMYYSARGPDPEDSFLDDADIMKPNLVAPGNSIWAAWSSLGTDSVEFQGESFAMMSGTSMAAPHIAGLAALIKQKFP  650 (718)
Q Consensus       571 ~~~~a~fSs~Gpt~~~~~~~~~g~~KPDI~APG~~I~Sa~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~q~~p  650 (718)
                       +.++.||++||..             ||+|||.+|++++          +++.|..++|||||||||||++|||+|++|
T Consensus       184 -~~~~~fS~~G~~~-------------di~APG~~i~s~~----------~~~~~~~~sGTS~AaP~vaG~aAll~~~~p  239 (281)
T 1to2_E          184 -NQRASFSSVGPEL-------------DVMAPGVSIQSTL----------PGNKYGAYNGTSMASPHVAGAAALILSKHP  239 (281)
T ss_dssp             -SCBCTTCCCSTTC-------------CEEEECSSEEEEE----------TTTEEEEECBHHHHHHHHHHHHHHHHHHST
T ss_pred             -CCcCCcCCCCCCc-------------eEEecCCCeEeec----------CCCCEEecCcHHHHHHHHHHHHHHHHHhCC
Confidence             2367899999876             9999999999998          566899999999999999999999999999


Q ss_pred             CCCHHHHHHHHHhcccccccCCCccccccccCCCCCCCCCCCCCccccccccccccCCC
Q 005034          651 SFSPSAIASALSTSATLYDKNGGPIMAQRAYAKPDENQSPATPFDMGSGFVNATASLDP  709 (718)
Q Consensus       651 ~ls~~~ik~~L~~TA~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~G~vn~~~Al~~  709 (718)
                      +|+++|||++|++||+++..                      +..||||+||+.+|++.
T Consensus       240 ~lt~~~v~~~L~~tA~~~g~----------------------~~~~G~G~v~~~~a~~~  276 (281)
T 1to2_E          240 NWTNTQVRSSLENTTTKLGD----------------------SFYYGKGLINVQAAAQH  276 (281)
T ss_dssp             TCCHHHHHHHHHTTCBCCSC----------------------HHHHTTCBCCHHHHTSS
T ss_pred             CCCHHHHHHHHHhhCcccCC----------------------CCCcccceecHHHHhhh
Confidence            99999999999999998741                      45799999999999975


No 14 
>4h6x_A Thiazoline oxidase/subtilisin-like protease; hydrolase; 2.00A {Prochloron didemni} PDB: 4aks_A 4akt_A
Probab=100.00  E-value=1e-53  Score=460.85  Aligned_cols=304  Identities=22%  Similarity=0.230  Sum_probs=193.7

Q ss_pred             CCCcccccccCCCCCCCCCcEEEEEccccCCCCCCCcCCCCCCCCCCCCCCCccccccCCCCCCCCCceeeeeeecchhh
Q 005034          170 GLPQGAWIQEGGYETAGEGVVIGFIDTGIDPTHPSFADDASEHSYPVPSHFSGICEVTRDFPSGSCNRKLIGARHFAASA  249 (718)
Q Consensus       170 ~~~~~~w~~~~~~~~~G~gv~VaVIDtGid~~Hp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~  249 (718)
                      ++++ +|..    +..|++|+|||||||||++||+|++...   .+....|....+....        .......+..+.
T Consensus        19 G~~~-~w~~----~~g~~~V~VaViDtGiD~~Hpdf~g~~~---~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~   82 (357)
T 4h6x_A           19 GLAD-LHNQ----TLGDPQITIVIIDGDPDYTLSCFEGAEV---SKVFPYWHEPAEPITP--------EDYAAFQSIRDQ   82 (357)
T ss_dssp             THHH-HHHH----CSCCTTSEEEEEESCCCTTSGGGTTCEE---EECCCTTSCCCCCCCH--------HHHHHHHHHHHH
T ss_pred             CHHH-HHHh----cCCCCCCEEEEEcCCCCCCChhHcCCCc---ccccccccccccccCc--------ccccccccccCc
Confidence            4444 7887    5678999999999999999999998654   3333445443321100        000000000000


Q ss_pred             ------hhcCccCCCCCCCCCCCCCCCccccccccccCCCCCccccccccCccccccCCceEEEEeecccCCC-----CC
Q 005034          250 ------ITRGIFNSSQDYASPFDGDGHGSHTASVAAGNHGIPVVVTGHHFGNASGMAPRSHIAVYKALYKSFG-----GF  318 (718)
Q Consensus       250 ------~~~~~~~~~~~~~~~~d~~gHGThVAGiiag~~~~~~~~~g~~~~~~~GvAp~A~i~~~kv~~~~~~-----~~  318 (718)
                            ..........+..++.|.+||||||||||+|+.+          .++.||||+|+|+.+|++....+     ..
T Consensus        83 ~~~~~~~~~~~~~~~~~~~~~~D~~gHGThVAGiiag~~~----------~g~~GvAp~a~l~~~k~~~~~~~~~~~~~~  152 (357)
T 4h6x_A           83 GLKGKEKEEALEAVIPDTKDRIVLNDHACHVTSTIVGQEH----------SPVFGIAPNCRVINMPQDAVIRGNYDDVMS  152 (357)
T ss_dssp             TCCSHHHHHHHHHHCTTTHHHHHHHHHHHHHHHHHHCCTT----------SSCCCSCTTSEEEEEECTTC----------
T ss_pred             cccccccccccccccCCCCCCcCCCCcHHHHHHHHhccCC----------CCceEeeccceEEeeeecccCCCCcccccc
Confidence                  0000000111223344677999999999999754          24689999999999999754221     33


Q ss_pred             HHHHHHHHHHHHHCCCCEEEEcCCCCCCCCCCCccccHHHHHHHHHHHCCCEEEEecCCCCCCCCCCCCCCCceEEEeee
Q 005034          319 AADVVAAIDQAAQDGVDIISLSITPNRRPPGIATFFNPIDMALLSAAKAGIFVVQAAGNTGPSPKSMSSFSPWIFTVGAA  398 (718)
Q Consensus       319 ~~~i~~ai~~a~~~g~~ViN~S~G~~~~~~~~~~~~~~~~~a~~~a~~~GilvV~AAGN~g~~~~~~~~~~~~vitVgA~  398 (718)
                      ..+++++|+|++++|++|||||||.....   ....+.+.++++.+.++|++||+||||+|.....+|+..+++|+|||+
T Consensus       153 ~~~~~~ai~~a~~~g~~Vin~S~G~~~~~---~~~~~~~~~ai~~a~~~gv~vV~AAGN~g~~~~~~Pa~~~~vi~Vga~  229 (357)
T 4h6x_A          153 PLNLARAIDLALELGANIIHCAFCRPTQT---SEGEEILVQAIKKCQDNNVLIVSPTGNNSNESWCLPAVLPGTLAVGAA  229 (357)
T ss_dssp             CHHHHHHHHHHHHTTCSEEEEC--------------CHHHHHHHHHHHTTCEEEEECC---------------CEEEEEE
T ss_pred             HHHHHHHHHHHHHcCCCEEeeccccCCcc---ccchhHHHHHHHHHhhCCeEEEecccCCCCCcCcCcccCCCCceEEEe
Confidence            45688999999999999999999976443   234578899999999999999999999999888999999999999997


Q ss_pred             ccCCceeeeEEeCCCceEeeeccCCCCCceEEEEEcccccCCCCcccCCccccccCCCCCCccCCcCceEEEEEeecccc
Q 005034          399 SHDRIYTNSIILGNSLTISGVGLAPGTDKMYTLISALHALNNNTTTTDDMYVGECQDSSNFNQDLVQGNLLICSYSIRFV  478 (718)
Q Consensus       399 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~g~i~~~~~~~~~~  478 (718)
                      +.+                                                                             
T Consensus       230 ~~~-----------------------------------------------------------------------------  232 (357)
T 4h6x_A          230 KVD-----------------------------------------------------------------------------  232 (357)
T ss_dssp             CTT-----------------------------------------------------------------------------
T ss_pred             ccC-----------------------------------------------------------------------------
Confidence            532                                                                             


Q ss_pred             cCcchHHHHHHHHHhCCCcEEEEEeCCCccCcccCCCCCCCCeEEecCcchHHHHHHHHhccCCCccccceeeeeceeEE
Q 005034          479 LGLSTIKQAFETAKNLSAAGIVFYMDPFVIGFQLNPTPMKMPGIIIPSPDDSKILLQYYNSSLERDEVTKKIIKFGAVAC  558 (718)
Q Consensus       479 ~~~~~~~~~~~~~~~~ga~~vi~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~  558 (718)
                                                                                                      
T Consensus       233 --------------------------------------------------------------------------------  232 (357)
T 4h6x_A          233 --------------------------------------------------------------------------------  232 (357)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             EecccccccCCCCCceeccccCCCCCCCCCCCCCCCCCCceeccCCceeecccCCCCCCccccCccccccCchhhhhHHH
Q 005034          559 ILGGLKANFSNSAPKIMYYSARGPDPEDSFLDDADIMKPNLVAPGNSIWAAWSSLGTDSVEFQGESFAMMSGTSMAAPHI  638 (718)
Q Consensus       559 ~~~~~~~~~~~~~~~~a~fSs~Gpt~~~~~~~~~g~~KPDI~APG~~I~Sa~~~~~~~~~~~~~~~y~~~sGTSmAaP~V  638 (718)
                                   +.++.|||||+.          ..||||+|||.+|+|+.+         .++.|..++|||||||||
T Consensus       233 -------------~~~~~fSn~G~~----------~~~~di~APG~~i~s~~~---------~~~~~~~~sGTS~AaP~v  280 (357)
T 4h6x_A          233 -------------GTPCHFSNWGGN----------NTKEGILAPGEEILGAQP---------CTEEPVRLTGTSMAAPVM  280 (357)
T ss_dssp             -------------SSBCTTCC---C----------TTTTEEEEECSSEEECCT---------TCSCCEEECSHHHHHHHH
T ss_pred             -------------CcccccccCCCC----------CCccceeecCCCeEeccC---------CCCcccccCcHHHHHHHH
Confidence                         236889999975          468999999999999984         234667899999999999


Q ss_pred             HHHHHHHHH----hCCCCCHHHHHHHHHhcccccccCCCccccccccCCCCCCCCCCCCCccccccccccccCC
Q 005034          639 AGLAALIKQ----KFPSFSPSAIASALSTSATLYDKNGGPIMAQRAYAKPDENQSPATPFDMGSGFVNATASLD  708 (718)
Q Consensus       639 AG~aALl~q----~~p~ls~~~ik~~L~~TA~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~G~vn~~~Al~  708 (718)
                      ||++|||++    ++|.|+++|||++|++||++++...                 ...+.+||+|+||+.+||+
T Consensus       281 aG~~All~s~~~~~~~~lt~~~v~~~L~~tA~~~~~~~-----------------~~~~~~~G~G~vn~~~A~~  337 (357)
T 4h6x_A          281 TGISALLMSLQVQQGKPVDAEAVRTALLKTAIPCDPEV-----------------VEEPERCLRGFVNIPGAMK  337 (357)
T ss_dssp             HHHHHHHHHHHHHTTCCCCHHHHHHHHHHC-------------------------------CTTCBCCHHHHHH
T ss_pred             HHHHHHHHHhhHhhCCCCCHHHHHHHHHhhCccCCCCC-----------------CCCcccceeEEecHHHHHH
Confidence            999999995    5668999999999999999875432                 1235679999999999986


No 15 
>1y9z_A Alkaline serine protease; subtilisin-like alpha/beta domain, insert beta barrel domain hydrolase; HET: PMS; 1.40A {Pseudoalteromonas SP} PDB: 1v6c_A* 1wvm_A*
Probab=100.00  E-value=3.8e-51  Score=453.46  Aligned_cols=370  Identities=21%  Similarity=0.299  Sum_probs=264.4

Q ss_pred             CCCCcEEEEEccccCCCCCCCcCCCCCCCCCCCCCCCccccccCCCCCCCCCceeeeeeecchhhhhcCccCCCCCCCCC
Q 005034          185 AGEGVVIGFIDTGIDPTHPSFADDASEHSYPVPSHFSGICEVTRDFPSGSCNRKLIGARHFAASAITRGIFNSSQDYASP  264 (718)
Q Consensus       185 ~G~gv~VaVIDtGid~~Hp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~  264 (718)
                      +|+||+|||||||||++||+|.++..                              ..+++..          ..++..+
T Consensus        20 ~g~gv~VaViDtGvd~~Hp~l~~~~~------------------------------~~~~~~~----------~~~~~~~   59 (441)
T 1y9z_A           20 QAGNRTICIIDSGYDRSHNDLNANNV------------------------------TGTNNSG----------TGNWYQP   59 (441)
T ss_dssp             TGGGCEEEEEESCCCTTSTTTTTSEE------------------------------EECCCTT----------SCCTTCC
T ss_pred             CCCCcEEEEEcCCCCCCChhHhcCcc------------------------------cCcccCC----------CCCCCCC
Confidence            47799999999999999999987533                              0111110          0112345


Q ss_pred             CCCCCCccccccccccCCCCCccccccccCccccccCCc--eEEEEeecccCCCCCHHHHHHHHHHHHHC-CCCEEEEcC
Q 005034          265 FDGDGHGSHTASVAAGNHGIPVVVTGHHFGNASGMAPRS--HIAVYKALYKSFGGFAADVVAAIDQAAQD-GVDIISLSI  341 (718)
Q Consensus       265 ~d~~gHGThVAGiiag~~~~~~~~~g~~~~~~~GvAp~A--~i~~~kv~~~~~~~~~~~i~~ai~~a~~~-g~~ViN~S~  341 (718)
                      .|..||||||||||+|..+.         .++.||||+|  +|+.+|+++..+.++.+++++||+||+++ |++||||||
T Consensus        60 ~d~~gHGT~vAgiia~~~~~---------~g~~GvAP~a~~~l~~~kv~~~~g~~~~~~~~~ai~~a~~~~g~~Vin~S~  130 (441)
T 1y9z_A           60 GNNNAHGTHVAGTIAAIANN---------EGVVGVMPNQNANIHIVKVFNEAGWGYSSSLVAAIDTCVNSGGANVVTMSL  130 (441)
T ss_dssp             CSSCCHHHHHHHHHHCCCSS---------SBCCCSSCSSCSEEEEEECEETTEECCSSCHHHHHHHHHHTTCCSEEEECC
T ss_pred             CCCCCcHHHHHHHHhcccCC---------CCceEecCCCCCEEEEEEEeCCCCCcCHHHHHHHHHHHHHhcCCcEEEeCC
Confidence            67899999999999997532         3468999995  99999999875557778999999999999 999999999


Q ss_pred             CCCCCCCCCCccccHHHHHHHHHHHCCCEEEEecCCCCCCCCCCCCCCCceEEEeeeccCCceeeeEEeCCCceEe--ee
Q 005034          342 TPNRRPPGIATFFNPIDMALLSAAKAGIFVVQAAGNTGPSPKSMSSFSPWIFTVGAASHDRIYTNSIILGNSLTIS--GV  419 (718)
Q Consensus       342 G~~~~~~~~~~~~~~~~~a~~~a~~~GilvV~AAGN~g~~~~~~~~~~~~vitVgA~~~~~~~~~~~~~~~~~~~~--~~  419 (718)
                      |....       ...+.++++.+.++|++||+||||+|.....+|+..+++|+|||++.++....+.+++....+.  |.
T Consensus       131 G~~~~-------~~~~~~ai~~a~~~gv~vV~AAGN~g~~~~~~Pa~~~~vi~VgA~~~~~~~~~~S~~g~~vdv~ApG~  203 (441)
T 1y9z_A          131 GGSGS-------TTTERNALNTHYNNGVLLIAAAGNAGDSSYSYPASYDSVMSVAAVDSNLDHAAFSQYTDQVEISGPGE  203 (441)
T ss_dssp             CBSCC-------BHHHHHHHHHHHHTTCEEEEECCSSSSSBCCBTTTSTTEEEEEEECTTCCBCTTSCCCTTEEEEEECS
T ss_pred             CCCCC-------CHHHHHHHHHHHHCCCEEEEecCCCCCCCCCCCCCCCCeEEEEEECCCCCCCccccCCCceEEEeccC
Confidence            97542       2567888999999999999999999998888999999999999999988777776666544332  21


Q ss_pred             ccCCCC---Cc----------------eEE---E-----EEcccccCCCCcccCCccccccCCC-CCCccCCcCceEEEE
Q 005034          420 GLAPGT---DK----------------MYT---L-----ISALHALNNNTTTTDDMYVGECQDS-SNFNQDLVQGNLLIC  471 (718)
Q Consensus       420 ~~~~~~---~~----------------~~~---~-----~~~~~~~~~~~~~~~~~~~~~c~~~-~~~~~~~~~g~i~~~  471 (718)
                      .+....   +.                ..|   .     .+........    .......|... ..++..+++|||++|
T Consensus       204 ~i~s~~~~g~g~~~~~~~~G~s~~~~~~~p~~~~~~~~~~~~~~~~~g~----~~~~~~~C~~~~~~~~~~~~~gkivl~  279 (441)
T 1y9z_A          204 AILSTVTVGEGRLADITIGGQSYFSNGVVPHNRLTPSGTSYAPAPINAS----ATGALAECTVNGTSFSCGNMANKICLV  279 (441)
T ss_dssp             SEEEECSTTCEEEEEEEETTEECGGGCCEECEEEEEETTEEEECCCCCE----EEEEEEEEEEETTEEECCCCTTEEEEE
T ss_pred             CeeccccCCCcccceeecccccccccccCcccccccCCccccccccccc----cccchhccccccccccCCCccccEEEE
Confidence            111000   00                000   0     0000000000    00113447543 346778899999999


Q ss_pred             EeecccccCcchHHHHHHHHHhCCCcEEEEEeCCCccCcc-----cCCCCCCCCeEEecCcchHHHHHHHHhccCCCccc
Q 005034          472 SYSIRFVLGLSTIKQAFETAKNLSAAGIVFYMDPFVIGFQ-----LNPTPMKMPGIIIPSPDDSKILLQYYNSSLERDEV  546 (718)
Q Consensus       472 ~~~~~~~~~~~~~~~~~~~~~~~ga~~vi~~~~~~~~~~~-----~~~~~~~~p~~~~~~~~~~~~l~~~~~~~~~~~~~  546 (718)
                      .|+.+. .....+..+..+++++|+.++|+|++....+..     .......+|.+++ +..++..|+.++..       
T Consensus       280 ~rg~~~-~~~~~~~~~~~~~~~aGa~gvii~~~~~~~g~~~~~~~~~~~~~~~p~~~v-~~~~g~~l~~~~~~-------  350 (441)
T 1y9z_A          280 ERVGNQ-GSSYPEINSTKACKTAGAKGIIVYSNSALPGLQNPFLVDANSDITVPSVSV-DRATGLALKAKLGQ-------  350 (441)
T ss_dssp             ECCSCS-SSSCTHHHHHHHHHHTTCSEEEEECCTTSCSCCCCEEECTTCCCCSCEEEE-CHHHHHHHHTTTTS-------
T ss_pred             eccccC-cccccHHHHHHHHHhcCCeEEEEEeCCCccccccccccccccCccccEEEE-eHHHHHHHHHHhcC-------
Confidence            985321 123466788999999999999999987543321     1233456787766 44566666543321       


Q ss_pred             cceeeeeceeEEEecccccccCCCCCceeccccCCCCCCCCCCCCCCCCCCceeccCCceeecccCCCCCCccccCcccc
Q 005034          547 TKKIIKFGAVACILGGLKANFSNSAPKIMYYSARGPDPEDSFLDDADIMKPNLVAPGNSIWAAWSSLGTDSVEFQGESFA  626 (718)
Q Consensus       547 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~fSs~Gpt~~~~~~~~~g~~KPDI~APG~~I~Sa~~~~~~~~~~~~~~~y~  626 (718)
                                                                         .+.      +++.          .++.|.
T Consensus       351 ---------------------------------------------------~~t------~~~~----------~~~~y~  363 (441)
T 1y9z_A          351 ---------------------------------------------------STT------VSNQ----------GNQDYE  363 (441)
T ss_dssp             ---------------------------------------------------EEE------EEEE----------EEESEE
T ss_pred             ---------------------------------------------------Ccc------cccc----------cCCCce
Confidence                                                               111      0111          345899


Q ss_pred             ccCchhhhhHHHHHHHHHHHHhCCCCCHHHHHHHHHhcccccccCCCccccccccCCCCCCCCCCCCCcccccccccccc
Q 005034          627 MMSGTSMAAPHIAGLAALIKQKFPSFSPSAIASALSTSATLYDKNGGPIMAQRAYAKPDENQSPATPFDMGSGFVNATAS  706 (718)
Q Consensus       627 ~~sGTSmAaP~VAG~aALl~q~~p~ls~~~ik~~L~~TA~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~G~vn~~~A  706 (718)
                      .++|||||||||||++|||+|++|+|+|++||++||+||++++..+.                   +.+||+|+||+.+|
T Consensus       364 ~~sGTSmAaP~VAG~aALl~~~~p~~sp~~ik~~L~~TA~~~~~~g~-------------------~~~~G~G~vn~~~A  424 (441)
T 1y9z_A          364 YYNGTSMATPHVSGVATLVWSYHPECSASQVRAALNATADDLSVAGR-------------------DNQTGYGMINAVAA  424 (441)
T ss_dssp             EECSHHHHHHHHHHHHHHHHHHCTTSCHHHHHHHHHHHSBCCSSSSC-------------------BTTTBTCBCCHHHH
T ss_pred             eecccccCCcccchHHHHHHHHCCCCCHHHHHHHHHhhchhhccCCC-------------------cccccccccCHHHH
Confidence            99999999999999999999999999999999999999998865543                   56799999999999


Q ss_pred             CCC
Q 005034          707 LDP  709 (718)
Q Consensus       707 l~~  709 (718)
                      ++.
T Consensus       425 ~~~  427 (441)
T 1y9z_A          425 KAY  427 (441)
T ss_dssp             HHH
T ss_pred             HHH
Confidence            863


No 16 
>3zxy_A Subtilisin-like protein; hydrolase; 1.58A {Prochloron didemni} PDB: 3zxx_A
Probab=100.00  E-value=3.7e-52  Score=435.14  Aligned_cols=266  Identities=23%  Similarity=0.296  Sum_probs=213.0

Q ss_pred             CCCC-CCcEEEEEccccCCCCCCCcCCCCCCCCCCCCCCCccccccCCCCCCCCCceeeeeeecchhhhhcCccCCCCCC
Q 005034          183 ETAG-EGVVIGFIDTGIDPTHPSFADDASEHSYPVPSHFSGICEVTRDFPSGSCNRKLIGARHFAASAITRGIFNSSQDY  261 (718)
Q Consensus       183 ~~~G-~gv~VaVIDtGid~~Hp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~  261 (718)
                      .++| +||+|||||||||++||+|.++..                              ..+++..          ....
T Consensus         3 ~l~G~~gV~VaViDtGid~~Hpdl~g~~~------------------------------~~~~~~~----------~~~~   42 (282)
T 3zxy_A            3 SLKGDHNIRVAILDGPVDIAHPCFQGADL------------------------------TVLPTLA----------PTAA   42 (282)
T ss_dssp             TCCCCTTSEEEEEESCCCTTSGGGTTCEE------------------------------EECCCSS----------CCCC
T ss_pred             CCcCCCCCEEEEEcCCCCCCChhHCCCee------------------------------ecCcCCC----------CCCC
Confidence            3688 699999999999999999997543                              0001100          0011


Q ss_pred             CCCCCCCCCccccccccccCCCCCccccccccCccccccCCceEEEEeecccCC-CCCHHHHHHHHHHHHHCCCCEEEEc
Q 005034          262 ASPFDGDGHGSHTASVAAGNHGIPVVVTGHHFGNASGMAPRSHIAVYKALYKSF-GGFAADVVAAIDQAAQDGVDIISLS  340 (718)
Q Consensus       262 ~~~~d~~gHGThVAGiiag~~~~~~~~~g~~~~~~~GvAp~A~i~~~kv~~~~~-~~~~~~i~~ai~~a~~~g~~ViN~S  340 (718)
                      ....|.+||||||||||+|+.++          ++.||||+|+|+.+|++.++. .....+++++|+|+++++++|||||
T Consensus        43 ~~d~~~~gHGT~VAGiiag~~~~----------~~~GvAp~a~l~~~kv~~~~~~~~~~~~i~~ai~~a~~~~~~Vin~S  112 (282)
T 3zxy_A           43 RSDGFMSAHGTHVASIIFGQPET----------SVPGIAPQCRGLIVPIFSDDRRRITQLDLARGIERAVNAGAHIINIS  112 (282)
T ss_dssp             CTTCHHHHHHHHHHHHHHCCTTS----------SSCCSSTTSEEEEEECSCSSSSCCCHHHHHHHHHHHHHTTCSEEEEC
T ss_pred             CCCCCCCCcccceeehhhccCCc----------eeeeeccccceEeeEeeccccccchHHHHHHHHHHhhccCCeEEecc
Confidence            12234568999999999997542          467999999999999986543 3677889999999999999999999


Q ss_pred             CCCCCCCCCCCccccHHHHHHHHHHHCCCEEEEecCCCCCCCCCCCCCCCceEEEeeeccCCceeeeEEeCCCceEeeec
Q 005034          341 ITPNRRPPGIATFFNPIDMALLSAAKAGIFVVQAAGNTGPSPKSMSSFSPWIFTVGAASHDRIYTNSIILGNSLTISGVG  420 (718)
Q Consensus       341 ~G~~~~~~~~~~~~~~~~~a~~~a~~~GilvV~AAGN~g~~~~~~~~~~~~vitVgA~~~~~~~~~~~~~~~~~~~~~~~  420 (718)
                      ||.....   ......++++++.+.++|+++|+||||+|.....+|+..+++|+|||++.+                   
T Consensus       113 ~G~~~~~---~~~~~~~~~ai~~a~~~gi~vV~AaGN~g~~~~~~Pa~~~~vi~Vga~~~~-------------------  170 (282)
T 3zxy_A          113 GGELTDF---GEADGWLENAVSLCRQNNVLLVAAAGNNGCDCLHVPAALPAVLAVGAMDDH-------------------  170 (282)
T ss_dssp             CCEEESS---SCCCHHHHHHHHHHHHTTCEEEEECCSSCSSCEEETTTSTTCEEEEEECTT-------------------
T ss_pred             Ccccccc---ccccHHHHHHHHHHhhcCceEEEecccCCCccccCccccceeEEEEEEcCC-------------------
Confidence            9975432   224567889999999999999999999999888889999999999996532                   


Q ss_pred             cCCCCCceEEEEEcccccCCCCcccCCccccccCCCCCCccCCcCceEEEEEeecccccCcchHHHHHHHHHhCCCcEEE
Q 005034          421 LAPGTDKMYTLISALHALNNNTTTTDDMYVGECQDSSNFNQDLVQGNLLICSYSIRFVLGLSTIKQAFETAKNLSAAGIV  500 (718)
Q Consensus       421 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~g~i~~~~~~~~~~~~~~~~~~~~~~~~~~ga~~vi  500 (718)
                                                                                                      
T Consensus       171 --------------------------------------------------------------------------------  170 (282)
T 3zxy_A          171 --------------------------------------------------------------------------------  170 (282)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             EEeCCCccCcccCCCCCCCCeEEecCcchHHHHHHHHhccCCCccccceeeeeceeEEEecccccccCCCCCceeccccC
Q 005034          501 FYMDPFVIGFQLNPTPMKMPGIIIPSPDDSKILLQYYNSSLERDEVTKKIIKFGAVACILGGLKANFSNSAPKIMYYSAR  580 (718)
Q Consensus       501 ~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~fSs~  580 (718)
                                                                                             +.++.||++
T Consensus       171 -----------------------------------------------------------------------~~~~~~S~~  179 (282)
T 3zxy_A          171 -----------------------------------------------------------------------GHPLDFSNW  179 (282)
T ss_dssp             -----------------------------------------------------------------------SCBCSSSCC
T ss_pred             -----------------------------------------------------------------------CccccccCC
Confidence                                                                                   235778998


Q ss_pred             CCCCCCCCCCCCCCCCCceeccCCceeecccCCCCCCccccCccccccCchhhhhHHHHHHHHHHHHhC----CCCCHHH
Q 005034          581 GPDPEDSFLDDADIMKPNLVAPGNSIWAAWSSLGTDSVEFQGESFAMMSGTSMAAPHIAGLAALIKQKF----PSFSPSA  656 (718)
Q Consensus       581 Gpt~~~~~~~~~g~~KPDI~APG~~I~Sa~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~q~~----p~ls~~~  656 (718)
                      |+.          +.||||+|||.+|+++.          +++.|..++|||||||||||++|||++++    |.++|+|
T Consensus       180 ~~~----------~~~~di~ApG~~i~s~~----------~~~~~~~~sGTS~AaP~vaG~aAll~~~~~~~~~~~~~~~  239 (282)
T 3zxy_A          180 GST----------YEQQGILAPGEDILGAK----------PGGGTERLSGTAFATPIVSGVAALLLSEQVRRGETPDPQK  239 (282)
T ss_dssp             CHH----------HHHHEEEEECSSEEEEC----------TTSCEEEECSHHHHHHHHHHHHHHHHHHHHHTTCCCCHHH
T ss_pred             CCC----------ccccceeccCcceeeec----------CCCceeecCCCcccchHHHHHHHHHHHHhHhhCCCCCHHH
Confidence            875          46889999999999998          56789999999999999999999999875    7899999


Q ss_pred             HHHHHHhcccccccCCCccccccccCCCCCCCCCCCCCccccccccccccCC
Q 005034          657 IASALSTSATLYDKNGGPIMAQRAYAKPDENQSPATPFDMGSGFVNATASLD  708 (718)
Q Consensus       657 ik~~L~~TA~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~G~vn~~~Al~  708 (718)
                      ||++|++||++++...                 +..+..+|+|+||+.+||+
T Consensus       240 vk~~L~~tA~~~~~~~-----------------~~~~~~~G~G~ln~~~A~~  274 (282)
T 3zxy_A          240 VRQLLLQSALPCDDDA-----------------PEQARRCLAGRLNVSGAFT  274 (282)
T ss_dssp             HHHHHHHHCBCC------------------------CGGGTTCBCCHHHHHH
T ss_pred             HHHHHHhhCeeCCCCC-----------------CCccCceeeeEeCHHHHHH
Confidence            9999999998764321                 2335679999999999985


No 17 
>2x8j_A Intracellular subtilisin protease; hydrolase, serine protease, intracellular proteinase regulat; HET: CSX 1PE; 1.56A {Bacillus clausii} PDB: 2wv7_A 2wwt_A 2xrm_A*
Probab=100.00  E-value=1.3e-51  Score=438.72  Aligned_cols=263  Identities=29%  Similarity=0.399  Sum_probs=213.9

Q ss_pred             cccccCCCCCCCCCcEEEEEccccCCCCCCCcCCCCCCCCCCCCCCCccccccCCCCCCCCCceeeeeeecchhhhhcCc
Q 005034          175 AWIQEGGYETAGEGVVIGFIDTGIDPTHPSFADDASEHSYPVPSHFSGICEVTRDFPSGSCNRKLIGARHFAASAITRGI  254 (718)
Q Consensus       175 ~w~~~~~~~~~G~gv~VaVIDtGid~~Hp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~  254 (718)
                      +|..    +++|+||+|||||||||++||+|.++.                              ...++|..+..    
T Consensus        33 aw~~----~~~G~gv~VaViDtGid~~Hp~l~~~~------------------------------~~~~~~~~~~~----   74 (327)
T 2x8j_A           33 VWRA----SAKGAGQIIGVIDTGCQVDHPDLAERI------------------------------IGGVNLTTDYG----   74 (327)
T ss_dssp             HHHH----HGGGTTCEEEEEESCCCTTCTTTGGGE------------------------------EEEEECSSGGG----
T ss_pred             HHhc----CCCCCCCEEEEEcCCCCCCChhHhhcc------------------------------cCCccccCCCC----
Confidence            7776    689999999999999999999998642                              33344443210    


Q ss_pred             cCCCCCCCCCCCCCCCccccccccccCCCCCccccccccCccccccCCceEEEEeecccCCCCCHHHHHHHHHHHHH---
Q 005034          255 FNSSQDYASPFDGDGHGSHTASVAAGNHGIPVVVTGHHFGNASGMAPRSHIAVYKALYKSFGGFAADVVAAIDQAAQ---  331 (718)
Q Consensus       255 ~~~~~~~~~~~d~~gHGThVAGiiag~~~~~~~~~g~~~~~~~GvAp~A~i~~~kv~~~~~~~~~~~i~~ai~~a~~---  331 (718)
                          .+.....|..||||||||||+|..+.         .++.||||+|+|+.+|+++.++.+..++++++|+||++   
T Consensus        75 ----~~~~~~~d~~gHGT~VAgiia~~~~~---------~g~~GvAp~a~l~~~kv~~~~g~~~~~~i~~ai~~a~~~~~  141 (327)
T 2x8j_A           75 ----GDETNFSDNNGHGTHVAGTVAAAETG---------SGVVGVAPKADLFIIKALSGDGSGEMGWIAKAIRYAVDWRG  141 (327)
T ss_dssp             ----GCTTCCCCSSSHHHHHHHHHHCCCCS---------SBCCCSSTTCEEEEEECSCTTSEECHHHHHHHHHHHHHCCC
T ss_pred             ----CCCCCCCCCCCchHHHHHHHhccCCC---------CCcEeeCCCCEEEEEEeECCCCCcCHHHHHHHHHHHHhhcc
Confidence                01123467899999999999997421         34689999999999999987566788999999999999   


Q ss_pred             ---CCCCEEEEcCCCCCCCCCCCccccHHHHHHHHHHHCCCEEEEecCCCCCC-----CCCCCCCCCceEEEeeeccCCc
Q 005034          332 ---DGVDIISLSITPNRRPPGIATFFNPIDMALLSAAKAGIFVVQAAGNTGPS-----PKSMSSFSPWIFTVGAASHDRI  403 (718)
Q Consensus       332 ---~g~~ViN~S~G~~~~~~~~~~~~~~~~~a~~~a~~~GilvV~AAGN~g~~-----~~~~~~~~~~vitVgA~~~~~~  403 (718)
                         .+++|||||||....       ...+.++++.+.++|++||+||||+|..     ...+|+..+++|+|||++.+  
T Consensus       142 ~~~~~~~Vin~S~G~~~~-------~~~~~~ai~~a~~~gi~vV~AAGN~g~~~~~~~~~~~Pa~~~~vi~Vga~~~~--  212 (327)
T 2x8j_A          142 PKGEQMRIITMSLGGPTD-------SEELHDAVKYAVSNNVSVVCAAGNEGDGREDTNEFAYPAAYNEVIAVGAVDFD--  212 (327)
T ss_dssp             TTSCCCSEEEECEEBSCC-------CHHHHHHHHHHHHTTCEEEEECCCT---------TCBTTTSTTSEEEEEECTT--
T ss_pred             cccCCceEEEECCCcCCC-------CHHHHHHHHHHHHCCCeEEEEcCCCCCCCCCCCceeccccCCCEEEEEEECCC--
Confidence               899999999997542       3678889999999999999999999975     34678889999999997432  


Q ss_pred             eeeeEEeCCCceEeeeccCCCCCceEEEEEcccccCCCCcccCCccccccCCCCCCccCCcCceEEEEEeecccccCcch
Q 005034          404 YTNSIILGNSLTISGVGLAPGTDKMYTLISALHALNNNTTTTDDMYVGECQDSSNFNQDLVQGNLLICSYSIRFVLGLST  483 (718)
Q Consensus       404 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~g~i~~~~~~~~~~~~~~~  483 (718)
                                                                                                      
T Consensus       213 --------------------------------------------------------------------------------  212 (327)
T 2x8j_A          213 --------------------------------------------------------------------------------  212 (327)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             HHHHHHHHHhCCCcEEEEEeCCCccCcccCCCCCCCCeEEecCcchHHHHHHHHhccCCCccccceeeeeceeEEEeccc
Q 005034          484 IKQAFETAKNLSAAGIVFYMDPFVIGFQLNPTPMKMPGIIIPSPDDSKILLQYYNSSLERDEVTKKIIKFGAVACILGGL  563 (718)
Q Consensus       484 ~~~~~~~~~~~ga~~vi~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  563 (718)
                                                                                                      
T Consensus       213 --------------------------------------------------------------------------------  212 (327)
T 2x8j_A          213 --------------------------------------------------------------------------------  212 (327)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             ccccCCCCCceeccccCCCCCCCCCCCCCCCCCCceeccCCceeecccCCCCCCccccCccccccCchhhhhHHHHHHHH
Q 005034          564 KANFSNSAPKIMYYSARGPDPEDSFLDDADIMKPNLVAPGNSIWAAWSSLGTDSVEFQGESFAMMSGTSMAAPHIAGLAA  643 (718)
Q Consensus       564 ~~~~~~~~~~~a~fSs~Gpt~~~~~~~~~g~~KPDI~APG~~I~Sa~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aA  643 (718)
                              +.++.||++||.+             ||+|||.+|++++          +++.|..++|||||||||||++|
T Consensus       213 --------~~~~~fS~~G~~~-------------di~APG~~i~s~~----------~~~~~~~~sGTS~AaP~VaG~aA  261 (327)
T 2x8j_A          213 --------LRLSDFTNTNEEI-------------DIVAPGVGIKSTY----------LDSGYAELSGTAMAAPHVAGALA  261 (327)
T ss_dssp             --------CCBSCC---CCCC-------------SEEEECSSEEEEC----------STTCEEEEESGGGTHHHHHHHHH
T ss_pred             --------CCCCCccCCCCCc-------------eEecCcCceEeec----------CCCCEEeecCHHHHHHHHHHHHH
Confidence                    2367899999865             9999999999998          56689999999999999999999


Q ss_pred             HHHHh-----CCCCCHHHHHHHHHhcccccccCCCccccccccCCCCCCCCCCCCCccccccccccccCCC
Q 005034          644 LIKQK-----FPSFSPSAIASALSTSATLYDKNGGPIMAQRAYAKPDENQSPATPFDMGSGFVNATASLDP  709 (718)
Q Consensus       644 Ll~q~-----~p~ls~~~ik~~L~~TA~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~G~vn~~~Al~~  709 (718)
                      ||+|+     +|.+++.|||++|++||++++.                     ++..+|+|+||+.+|++.
T Consensus       262 ll~~~~~~~~~p~ls~~~v~~~L~~tA~~~g~---------------------~~~~~G~G~vd~~~A~~~  311 (327)
T 2x8j_A          262 LIINLAEDAFKRSLSETEIYAQLVRRATPIGF---------------------TAQAEGNGFLTLDLVERI  311 (327)
T ss_dssp             HHHHHHHHHHTSCCCHHHHHHHHHTTEECCSS---------------------CHHHHTTCEECTTHHHHH
T ss_pred             HHHHhhhhhcCCCCCHHHHHHHHHHhCccCCC---------------------CCCceeeeEECHHHHHHh
Confidence            99999     9999999999999999997642                     245799999999999863


No 18 
>2z30_A TK-subtilisin; thermococcus kodakaraensis, hydrolase; 1.65A {Thermococcus kodakarensis} PDB: 3a3o_A 3a3n_A 2zrq_A 2z57_A 2z56_A 2z58_A 3a3p_A 2z2x_A* 2z2y_A
Probab=100.00  E-value=3.1e-51  Score=435.33  Aligned_cols=268  Identities=27%  Similarity=0.428  Sum_probs=219.9

Q ss_pred             cCCCcccccccCCCCCCCC--CcEEEEEccccCCCCCCCcCCCCCCCCCCCCCCCccccccCCCCCCCCCceeeeeeecc
Q 005034          169 LGLPQGAWIQEGGYETAGE--GVVIGFIDTGIDPTHPSFADDASEHSYPVPSHFSGICEVTRDFPSGSCNRKLIGARHFA  246 (718)
Q Consensus       169 ~~~~~~~w~~~~~~~~~G~--gv~VaVIDtGid~~Hp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~  246 (718)
                      ++++. +|..    + +|+  ||+|||||||||++||+|.++..                              ..++|.
T Consensus        15 i~~~~-aw~~----~-~G~~~gv~VaViDtGid~~Hp~l~~~~~------------------------------~~~~~~   58 (320)
T 2z30_A           15 VKAPS-VWSI----T-DGSVSVIQVAVLDTGVDYDHPDLAANIA------------------------------WCVSTL   58 (320)
T ss_dssp             TTCGG-GTTT----C-CSCCTTCEEEEEESCBCTTCTTTGGGEE------------------------------EEEECG
T ss_pred             cChHH-HHHh----c-CCCcCCeEEEEECCCCCCCChhHhcccc------------------------------cCcccc
Confidence            44444 7775    3 899  99999999999999999997432                              223333


Q ss_pred             hhhhhcCccCCCCCCCCCCCCCCCccccccccccCCCCCccccccccCccccccCCceEEEEeecccCCCCCHHHHHHHH
Q 005034          247 ASAITRGIFNSSQDYASPFDGDGHGSHTASVAAGNHGIPVVVTGHHFGNASGMAPRSHIAVYKALYKSFGGFAADVVAAI  326 (718)
Q Consensus       247 ~~~~~~~~~~~~~~~~~~~d~~gHGThVAGiiag~~~~~~~~~g~~~~~~~GvAp~A~i~~~kv~~~~~~~~~~~i~~ai  326 (718)
                      .+..       ........|..+|||||||||+|..+.         .++.||||+|+|+.+|+++..+.+..++++++|
T Consensus        59 ~~~~-------~~~~~~~~d~~gHGT~vAgiia~~~n~---------~g~~GvAp~a~l~~~~v~~~~g~~~~~~i~~ai  122 (320)
T 2z30_A           59 RGKV-------STKLRDCADQNGHGTHVIGTIAALNND---------IGVVGVAPGVQIYSVRVLDARGSGSYSDIAIGI  122 (320)
T ss_dssp             GGCC-------BCCHHHHBCSSSHHHHHHHHHHCCSSS---------BSCCCSSTTCEEEEEECSCTTSEEEHHHHHHHH
T ss_pred             CCcc-------CCCCCCCCCCCCCHHHHHHHHHcccCC---------CceEeeCCCCEEEEEEeeCCCCCccHHHHHHHH
Confidence            2200       000012357889999999999997421         346899999999999999876667889999999


Q ss_pred             HHHHHC--------------------CCCEEEEcCCCCCCCCCCCccccHHHHHHHHHHHCCCEEEEecCCCCCCCCCCC
Q 005034          327 DQAAQD--------------------GVDIISLSITPNRRPPGIATFFNPIDMALLSAAKAGIFVVQAAGNTGPSPKSMS  386 (718)
Q Consensus       327 ~~a~~~--------------------g~~ViN~S~G~~~~~~~~~~~~~~~~~a~~~a~~~GilvV~AAGN~g~~~~~~~  386 (718)
                      +|+++.                    +++|||||||....       ...+.++++.+.++|++||+||||+|.....+|
T Consensus       123 ~~a~~~~~~~~~~~~~~~~~~~~~~~~~~Vin~S~G~~~~-------~~~~~~ai~~a~~~gi~vV~AAGN~g~~~~~~P  195 (320)
T 2z30_A          123 EQAILGPDGVADKDGDGIIAGDPDDDAAEVISMSLGGPAD-------DSYLYDMIIQAYNAGIVIVAASGNEGAPSPSYP  195 (320)
T ss_dssp             HHHHHTTTTCSCTTSSSCCTTCTTSCCCSEEEECEEBSCC-------CHHHHHHHHHHHHTTCEEEEECCSSCCSSCCBT
T ss_pred             HHHHhCcccccccccccccccccccCCceEEEecCCCCCC-------CHHHHHHHHHHHHCCCEEEEeCCCCCCCCCCCc
Confidence            999987                    99999999997542       367888889999999999999999999888899


Q ss_pred             CCCCceEEEeeeccCCceeeeEEeCCCceEeeeccCCCCCceEEEEEcccccCCCCcccCCccccccCCCCCCccCCcCc
Q 005034          387 SFSPWIFTVGAASHDRIYTNSIILGNSLTISGVGLAPGTDKMYTLISALHALNNNTTTTDDMYVGECQDSSNFNQDLVQG  466 (718)
Q Consensus       387 ~~~~~vitVgA~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~g  466 (718)
                      +..+++|+|||++.+                                                                 
T Consensus       196 a~~~~vi~Vga~~~~-----------------------------------------------------------------  210 (320)
T 2z30_A          196 AAYPEVIAVGAIDSN-----------------------------------------------------------------  210 (320)
T ss_dssp             TTSTTEEEEEEECTT-----------------------------------------------------------------
T ss_pred             ccCCCeEEEEeeCCC-----------------------------------------------------------------
Confidence            999999999997432                                                                 


Q ss_pred             eEEEEEeecccccCcchHHHHHHHHHhCCCcEEEEEeCCCccCcccCCCCCCCCeEEecCcchHHHHHHHHhccCCCccc
Q 005034          467 NLLICSYSIRFVLGLSTIKQAFETAKNLSAAGIVFYMDPFVIGFQLNPTPMKMPGIIIPSPDDSKILLQYYNSSLERDEV  546 (718)
Q Consensus       467 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~ga~~vi~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~l~~~~~~~~~~~~~  546 (718)
                                                                                                      
T Consensus       211 --------------------------------------------------------------------------------  210 (320)
T 2z30_A          211 --------------------------------------------------------------------------------  210 (320)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             cceeeeeceeEEEecccccccCCCCCceeccccCCCCCCCCCCCCCCCCCCceeccCCceeecccCCCCCCccccCcccc
Q 005034          547 TKKIIKFGAVACILGGLKANFSNSAPKIMYYSARGPDPEDSFLDDADIMKPNLVAPGNSIWAAWSSLGTDSVEFQGESFA  626 (718)
Q Consensus       547 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~fSs~Gpt~~~~~~~~~g~~KPDI~APG~~I~Sa~~~~~~~~~~~~~~~y~  626 (718)
                                               +.++.||++||               +|+|||.+|++++          +++.|.
T Consensus       211 -------------------------~~~~~~S~~g~---------------~v~APG~~i~s~~----------~~~~~~  240 (320)
T 2z30_A          211 -------------------------DNIASFSNRQP---------------EVSAPGVDILSTY----------PDDSYE  240 (320)
T ss_dssp             -------------------------SCBCTTSCSSC---------------SEEEECSSEEEEE----------TTTEEE
T ss_pred             -------------------------CCcCcccCCCC---------------CEEeCCCCeEEec----------cCCCeE
Confidence                                     23678999987               6899999999998          566899


Q ss_pred             ccCchhhhhHHHHHHHHHHHHhC-------------CCCCHHHHHHHHHhcccccccCCCccccccccCCCCCCCCCCCC
Q 005034          627 MMSGTSMAAPHIAGLAALIKQKF-------------PSFSPSAIASALSTSATLYDKNGGPIMAQRAYAKPDENQSPATP  693 (718)
Q Consensus       627 ~~sGTSmAaP~VAG~aALl~q~~-------------p~ls~~~ik~~L~~TA~~~~~~~~~~~~~~~~~~~~~~~~~~~~  693 (718)
                      .++|||||||||||++|||+|++             |.+++.+||++|++||+++...+.                   +
T Consensus       241 ~~sGTS~AaP~vaG~aAll~~~~~~~~~~~~~~~~~p~lt~~~v~~~L~~ta~~~~~~g~-------------------~  301 (320)
T 2z30_A          241 TLMGTAMATPHVSGVVALIQAAYYQKYGKILPVGTFDDISKNTVRGILHITADDLGPTGW-------------------D  301 (320)
T ss_dssp             EECSHHHHHHHHHHHHHHHHHHHHHHHSSCCCCCCTTCCSTTSHHHHHHHHSBCCSSSSS-------------------B
T ss_pred             eccCHHHHHHHHHHHHHHHHHhchhhcccccccccCCCCCHHHHHHHHHhhCccCCCCCC-------------------C
Confidence            99999999999999999999999             999999999999999998754332                   5


Q ss_pred             CccccccccccccCCC
Q 005034          694 FDMGSGFVNATASLDP  709 (718)
Q Consensus       694 ~~~G~G~vn~~~Al~~  709 (718)
                      ..+|||+||+.+||+.
T Consensus       302 ~~~G~G~vd~~~A~~~  317 (320)
T 2z30_A          302 ADYGYGVVRAALAVQA  317 (320)
T ss_dssp             TTTBTCBCCHHHHHHH
T ss_pred             CCcCCceeCHHHHHHH
Confidence            6799999999999864


No 19 
>2ixt_A 36KDA protease; serine protease, sphericase, subtilisin like protease, hydrolase; 0.8A {Bacillus sphaericus} SCOP: c.41.1.1 PDB: 3d43_A 1ea7_A* 2gko_A*
Probab=100.00  E-value=2.7e-50  Score=426.96  Aligned_cols=286  Identities=30%  Similarity=0.462  Sum_probs=222.1

Q ss_pred             cccccCCCCCCCCCcEEEEEccccCCCCCCCcCCCCCCCCCCCCCCCccccccCCCCCCCCCceeeeeeecchhhhhcCc
Q 005034          175 AWIQEGGYETAGEGVVIGFIDTGIDPTHPSFADDASEHSYPVPSHFSGICEVTRDFPSGSCNRKLIGARHFAASAITRGI  254 (718)
Q Consensus       175 ~w~~~~~~~~~G~gv~VaVIDtGid~~Hp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~  254 (718)
                      +|..    +++|+||+|||||||||++||+|.++..                              ..++|....     
T Consensus        18 ~w~~----~~~G~gv~VaViDtGvd~~H~~l~~~~~------------------------------~~~~~~~~~-----   58 (310)
T 2ixt_A           18 TLTS----TTGGSGINIAVLDTGVNTSHPDLVNNVE------------------------------QCKDFTGAT-----   58 (310)
T ss_dssp             TCCC----CCCCTTCEEEEEESCCCTTCTTTTTTEE------------------------------EEEESSSSS-----
T ss_pred             hhhc----cCCCCCcEEEEEecCCCCCCHHHhhccc------------------------------ccccccCCC-----
Confidence            5654    7899999999999999999999987432                              223333210     


Q ss_pred             cCCCCCCCCCCCCCCCccccccccccCCCCCccccccccCccccccCCceEEEEeecccCCCCCHHHHHHHHHHHHHCCC
Q 005034          255 FNSSQDYASPFDGDGHGSHTASVAAGNHGIPVVVTGHHFGNASGMAPRSHIAVYKALYKSFGGFAADVVAAIDQAAQDGV  334 (718)
Q Consensus       255 ~~~~~~~~~~~d~~gHGThVAGiiag~~~~~~~~~g~~~~~~~GvAp~A~i~~~kv~~~~~~~~~~~i~~ai~~a~~~g~  334 (718)
                         ........|..+|||||||||+|....       +..++.||||+|+|+.+|++...+.+..++++++|+|++++++
T Consensus        59 ---~~~~~~~~d~~gHGT~vAgiia~~~~~-------n~~g~~GvAp~a~l~~~~v~~~~g~~~~~~~~~ai~~a~~~~~  128 (310)
T 2ixt_A           59 ---TPINNSCTDRNGHGTHVAGTALADGGS-------DQAGIYGVAPDADLWAYKVLLDSGSGYSDDIAAAIRHAADQAT  128 (310)
T ss_dssp             ---SCEETCCCCSSSHHHHHHHHHHCBCCT-------TSCSCBCSCTTSEEEEEECSCTTSCCCHHHHHHHHHHHHHHHH
T ss_pred             ---CCCCCCCCCCCCCHHHHHHHHhccCCC-------CCCceEEECCCCEEEEEEEEcCCCCCcHHHHHHHHHHHHHhhh
Confidence               001123457889999999999987421       1135689999999999999987666889999999999999887


Q ss_pred             -----CEEEEcCCCCCCCCCCCccccHHHHHHHHHHHCCCEEEEecCCCCCC--CCCCCCCCCceEEEeeeccCCceeee
Q 005034          335 -----DIISLSITPNRRPPGIATFFNPIDMALLSAAKAGIFVVQAAGNTGPS--PKSMSSFSPWIFTVGAASHDRIYTNS  407 (718)
Q Consensus       335 -----~ViN~S~G~~~~~~~~~~~~~~~~~a~~~a~~~GilvV~AAGN~g~~--~~~~~~~~~~vitVgA~~~~~~~~~~  407 (718)
                           +|||||||....       ...+..+++.+.++|++||+||||+|..  ...+|+..+++|+|||++....    
T Consensus       129 ~~~~~~Vin~S~G~~~~-------~~~~~~ai~~a~~~gv~vV~AAGN~g~~~~~~~~Pa~~~~vi~Vga~~~~~~----  197 (310)
T 2ixt_A          129 ATGTKTIISMSLGSSAN-------NSLISSAVNYAYSKGVLIVAAAGNSGYSQGTIGYPGALPNAIAVAALENVQQ----  197 (310)
T ss_dssp             HHTCCEEEEECCCBSSC-------CHHHHHHHHHHHHTTCEEEEECCSCCSSTTCCCBTTTSTTSEEEEEEEEEEE----
T ss_pred             ccCCCeEEEEcCCCCCC-------CHHHHHHHHHHHhCCcEEEEcCCCCCCCCCCCCCcccCCCeeEEEecccccc----
Confidence                 999999997542       3678889999999999999999999976  4567888999999999752100    


Q ss_pred             EEeCCCceEeeeccCCCCCceEEEEEcccccCCCCcccCCccccccCCCCCCccCCcCceEEEEEeecccccCcchHHHH
Q 005034          408 IILGNSLTISGVGLAPGTDKMYTLISALHALNNNTTTTDDMYVGECQDSSNFNQDLVQGNLLICSYSIRFVLGLSTIKQA  487 (718)
Q Consensus       408 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~g~i~~~~~~~~~~~~~~~~~~~  487 (718)
                                                                                                      
T Consensus       198 --------------------------------------------------------------------------------  197 (310)
T 2ixt_A          198 --------------------------------------------------------------------------------  197 (310)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             HHHHHhCCCcEEEEEeCCCccCcccCCCCCCCCeEEecCcchHHHHHHHHhccCCCccccceeeeeceeEEEeccccccc
Q 005034          488 FETAKNLSAAGIVFYMDPFVIGFQLNPTPMKMPGIIIPSPDDSKILLQYYNSSLERDEVTKKIIKFGAVACILGGLKANF  567 (718)
Q Consensus       488 ~~~~~~~ga~~vi~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  567 (718)
                                                                                                      
T Consensus       198 --------------------------------------------------------------------------------  197 (310)
T 2ixt_A          198 --------------------------------------------------------------------------------  197 (310)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             CCCCCceeccccCCCCCCCCCCCCCCCCCCceeccCCceeecccCCCCCCccccCccccccCchhhhhHHHHHHHHHHHH
Q 005034          568 SNSAPKIMYYSARGPDPEDSFLDDADIMKPNLVAPGNSIWAAWSSLGTDSVEFQGESFAMMSGTSMAAPHIAGLAALIKQ  647 (718)
Q Consensus       568 ~~~~~~~a~fSs~Gpt~~~~~~~~~g~~KPDI~APG~~I~Sa~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~q  647 (718)
                       .....++.||++||..... .-..++.||||+|||.+|++++          +++.|..++|||||||||||++|||+|
T Consensus       198 -~g~~~~~~~S~~G~~~~~g-~~~~~~~~~di~ApG~~i~s~~----------~~~~~~~~sGTS~AaP~vaG~aAll~~  265 (310)
T 2ixt_A          198 -NGTYRVADYSSRGYISTAG-DYVIQEGDIEISAPGSSVYSTW----------YNGGYNTISGTSMATPHVSGLAAKIWA  265 (310)
T ss_dssp             -TTEEEECTTSCCCCTTTTT-SSSCCTTCCCEEEECSSEEEEC----------TTSSEEEECSHHHHHHHHHHHHHHHHH
T ss_pred             -CCCeeeccccCCCCccCCc-cccccCCCeeEECCCCCEeeec----------CCCCEEeeccHHHHHHHHHHHHHHHHH
Confidence             0000367899999954210 0001345999999999999998          566899999999999999999999999


Q ss_pred             hCCCCCHHHHHHHHHhcccccccCCCccccccccCCCCCCCCCCCCCcccccccccc
Q 005034          648 KFPSFSPSAIASALSTSATLYDKNGGPIMAQRAYAKPDENQSPATPFDMGSGFVNAT  704 (718)
Q Consensus       648 ~~p~ls~~~ik~~L~~TA~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~G~vn~~  704 (718)
                      ++|+|++.|||++|++||++++..+.            ....+.++..+|||++|+.
T Consensus       266 ~~p~lt~~~v~~~L~~tA~~~~~~~~------------~~a~~g~d~~~G~G~~~vq  310 (310)
T 2ixt_A          266 ENPSLSNTQLRSNLQERAKSVDIKGG------------YGAAIGDDYASGFGFARVQ  310 (310)
T ss_dssp             HSTTCCHHHHHHHHHHHHHTSCCCBS------------TTCCSSSBTTTBTCBCCC-
T ss_pred             hCCCCCHHHHHHHHHhhCcccCCCCC------------cccccCCccccccceeecC
Confidence            99999999999999999998764321            1124556889999999963


No 20 
>4h6w_A N-terminal cyanobactin protease; hydrolase; 2.45A {Planktothrix agardhii nies-596}
Probab=100.00  E-value=2e-51  Score=435.10  Aligned_cols=275  Identities=23%  Similarity=0.324  Sum_probs=220.3

Q ss_pred             cCCCcccccccCCCCCCCCCcEEEEEccccCCCCCCCcCCCCCCCCCCCCCCCccccccCCCCCCCCCceeeeeeecchh
Q 005034          169 LGLPQGAWIQEGGYETAGEGVVIGFIDTGIDPTHPSFADDASEHSYPVPSHFSGICEVTRDFPSGSCNRKLIGARHFAAS  248 (718)
Q Consensus       169 ~~~~~~~w~~~~~~~~~G~gv~VaVIDtGid~~Hp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~  248 (718)
                      .++++ +|+.    ...++||+|||||||||++||+|.++..                             ....+|..+
T Consensus         8 ~G~~~-aW~~----~~G~~gV~VaViDtGid~~Hpdl~g~~~-----------------------------~~~~~~~~~   53 (306)
T 4h6w_A            8 PGLKK-LWSE----TRGDPKICVAVLDGIVDQNHPCFIGADL-----------------------------TRLPSLVSG   53 (306)
T ss_dssp             TTHHH-HHHH----CSCCTTCEEEEESSCCCTTSGGGTTCEE-----------------------------EECC-----
T ss_pred             cCHHH-HHhh----hCCCCCCEEEEEcCCCCCCChhHcCCcc-----------------------------cCCCcccCC
Confidence            35555 8988    3345899999999999999999997643                             111111111


Q ss_pred             hhhcCccCCCCCCCCCCCCCCCccccccccccCCCCCccccccccCccccccCCceEEEEeecccCC-CCCHHHHHHHHH
Q 005034          249 AITRGIFNSSQDYASPFDGDGHGSHTASVAAGNHGIPVVVTGHHFGNASGMAPRSHIAVYKALYKSF-GGFAADVVAAID  327 (718)
Q Consensus       249 ~~~~~~~~~~~~~~~~~d~~gHGThVAGiiag~~~~~~~~~g~~~~~~~GvAp~A~i~~~kv~~~~~-~~~~~~i~~ai~  327 (718)
                                 +.....|.++|||||||||+|+.+          +++.||||+|+|+.+|++.+.. .....+++++|+
T Consensus        54 -----------~~~~~~d~~gHGThVAGiiag~~~----------~~~~GVAp~a~l~~~kv~~~~~~~~~~~~i~~ai~  112 (306)
T 4h6w_A           54 -----------EANANGSMSTHGTHVASIIFGQHD----------SPVTGIAPQCRGLIVPVFADESLKLSQLDLSRAIE  112 (306)
T ss_dssp             ----------------CCCCHHHHHHHHHHHCCTT----------SSSCCSSTTSEEEECCCCCSSSCCCCHHHHHHHHH
T ss_pred             -----------CCCCCCCCCCchHHHHHHHHcccc----------CCcceeccccccceeeccccccccchHHHHHHHHH
Confidence                       112234678999999999999754          2468999999999999986533 477888999999


Q ss_pred             HHHHCCCCEEEEcCCCCCCCCCCCccccHHHHHHHHHHHCCCEEEEecCCCCCCCCCCCCCCCceEEEeeeccCCceeee
Q 005034          328 QAAQDGVDIISLSITPNRRPPGIATFFNPIDMALLSAAKAGIFVVQAAGNTGPSPKSMSSFSPWIFTVGAASHDRIYTNS  407 (718)
Q Consensus       328 ~a~~~g~~ViN~S~G~~~~~~~~~~~~~~~~~a~~~a~~~GilvV~AAGN~g~~~~~~~~~~~~vitVgA~~~~~~~~~~  407 (718)
                      |+++++++|||+|||.....   ......++++++.+.++|++||+||||+|.....+|+..+++|+|||++..      
T Consensus       113 ~a~~~g~~vi~~s~g~~~~~---~~~~~~~~~ai~~a~~~gi~vvaaagn~g~~~~~~Pa~~~~vi~Vga~~~~------  183 (306)
T 4h6w_A          113 QAVNNGANIINVSAGQLTDA---GEADTWLEKAIQLCQENNVLLIAATGNDGCECLHVPASLPTVLAVGAMDDQ------  183 (306)
T ss_dssp             HHHHTTCSEEEECCCEEESS---SCCCHHHHHHHHHHHHTTCEEEEECCSSSSBCEEETTTSTTCEEEEEECTT------
T ss_pred             HhhcccceeeeccccccccC---CCccHHHHHHHHHHHHcCCeEEEecCCCCcccccccccCCcceEEEEecCC------
Confidence            99999999999999964332   224567889999999999999999999999888899999999999997532      


Q ss_pred             EEeCCCceEeeeccCCCCCceEEEEEcccccCCCCcccCCccccccCCCCCCccCCcCceEEEEEeecccccCcchHHHH
Q 005034          408 IILGNSLTISGVGLAPGTDKMYTLISALHALNNNTTTTDDMYVGECQDSSNFNQDLVQGNLLICSYSIRFVLGLSTIKQA  487 (718)
Q Consensus       408 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~g~i~~~~~~~~~~~~~~~~~~~  487 (718)
                                                                                                      
T Consensus       184 --------------------------------------------------------------------------------  183 (306)
T 4h6w_A          184 --------------------------------------------------------------------------------  183 (306)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             HHHHHhCCCcEEEEEeCCCccCcccCCCCCCCCeEEecCcchHHHHHHHHhccCCCccccceeeeeceeEEEeccccccc
Q 005034          488 FETAKNLSAAGIVFYMDPFVIGFQLNPTPMKMPGIIIPSPDDSKILLQYYNSSLERDEVTKKIIKFGAVACILGGLKANF  567 (718)
Q Consensus       488 ~~~~~~~ga~~vi~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  567 (718)
                                                                                                      
T Consensus       184 --------------------------------------------------------------------------------  183 (306)
T 4h6w_A          184 --------------------------------------------------------------------------------  183 (306)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             CCCCCceeccccCCCCCCCCCCCCCCCCCCceeccCCceeecccCCCCCCccccCccccccCchhhhhHHHHHHHHHHHH
Q 005034          568 SNSAPKIMYYSARGPDPEDSFLDDADIMKPNLVAPGNSIWAAWSSLGTDSVEFQGESFAMMSGTSMAAPHIAGLAALIKQ  647 (718)
Q Consensus       568 ~~~~~~~a~fSs~Gpt~~~~~~~~~g~~KPDI~APG~~I~Sa~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~q  647 (718)
                          +.+++||++|+.          ..||||+|||.+|+|+.          +++.|..++|||||||||||++|||++
T Consensus       184 ----~~~~~~s~~g~~----------~~~~di~APG~~i~s~~----------~~~~~~~~sGTS~AaP~VaG~~All~s  239 (306)
T 4h6w_A          184 ----GKPVDFSNWGDA----------YQKQGILAPGKDILGAK----------PNGGTIRLSGTSFATPIVSGVAALLLS  239 (306)
T ss_dssp             ----SCBCSSSCBCHH----------HHHHEEEEECSSEEEEC----------TTSCEEEECSHHHHHHHHHHHHHHHHH
T ss_pred             ----CCccccccccCC----------cCcceeecCCcCccccc----------CCCceeccCCCcchhHHHHHHHHHHHH
Confidence                135678888875          46889999999999998          567899999999999999999999986


Q ss_pred             ----hCCCCCHHHHHHHHHhcccccccCCCccccccccCCCCCCCCCCCCCccccccccccccCC
Q 005034          648 ----KFPSFSPSAIASALSTSATLYDKNGGPIMAQRAYAKPDENQSPATPFDMGSGFVNATASLD  708 (718)
Q Consensus       648 ----~~p~ls~~~ik~~L~~TA~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~G~vn~~~Al~  708 (718)
                          ++|.++|+|||++|++||++++..+.                 .....||+|+||+.+||+
T Consensus       240 ~~~~~~p~~t~~~v~~~L~~tA~~~~~~~~-----------------~~~~~~G~G~ln~~~Av~  287 (306)
T 4h6w_A          240 LQIKRGEKPDPQKVKNALLASATPCNPKDT-----------------DDQSRCLMGKLNILDAIE  287 (306)
T ss_dssp             HHHHTTCCCCHHHHHHHHHHTCBCCCTTTC-----------------SCGGGGTTCBCCHHHHHH
T ss_pred             HHHhhCCCCCHHHHHHHHHhhCccCCCCCC-----------------CCCCCcceeecCHHHHHH
Confidence                46999999999999999998865432                 224579999999999986


No 21 
>1wmd_A Protease; alpha-beta hydrolase fold, jelly-roll beta-barrel, hydrolase; 1.30A {Bacillus SP} SCOP: b.18.1.20 c.41.1.1 PDB: 1wme_A 1wmf_A
Probab=100.00  E-value=1.3e-49  Score=440.75  Aligned_cols=295  Identities=26%  Similarity=0.363  Sum_probs=224.4

Q ss_pred             ccCCCcccccccCCCCCCCCCcEEEEEccccCC------CCCCCcCCCCCCCCCCCCCCCccccccCCCCCCCCCceeee
Q 005034          168 FLGLPQGAWIQEGGYETAGEGVVIGFIDTGIDP------THPSFADDASEHSYPVPSHFSGICEVTRDFPSGSCNRKLIG  241 (718)
Q Consensus       168 ~~~~~~~~w~~~~~~~~~G~gv~VaVIDtGid~------~Hp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~  241 (718)
                      .++++. +|...   +++|+||+|||||||||.      +||+|.++.                              ..
T Consensus         7 ~i~~~~-~~~~~---g~~G~gv~VaViDtGvd~~~~~~~~hp~l~~~i------------------------------~~   52 (434)
T 1wmd_A            7 IVKADV-AQSSY---GLYGQGQIVAVADTGLDTGRNDSSMHEAFRGKI------------------------------TA   52 (434)
T ss_dssp             HTTHHH-HHHHH---CCSCTTCEEEEEESCCTTSCSSTTSCTTTTTCE------------------------------EE
T ss_pred             hhCchh-hhhcc---CCCCcccEEEEEecCcCCCCCCcccCcccCCCE------------------------------ee
Confidence            345544 77632   689999999999999999      799998643                              23


Q ss_pred             eeecchhhhhcCccCCCCCCCCCCCCCCCccccccccccCCCCCccccccccCccccccCCceEEEEeecccCCCC--CH
Q 005034          242 ARHFAASAITRGIFNSSQDYASPFDGDGHGSHTASVAAGNHGIPVVVTGHHFGNASGMAPRSHIAVYKALYKSFGG--FA  319 (718)
Q Consensus       242 ~~~~~~~~~~~~~~~~~~~~~~~~d~~gHGThVAGiiag~~~~~~~~~g~~~~~~~GvAp~A~i~~~kv~~~~~~~--~~  319 (718)
                      .++|.+.             ..+.|..||||||||||+|+.           ..+.||||+|+|+.+|+++..+..  ..
T Consensus        53 ~~~~~~~-------------~~~~d~~gHGT~VAgiiag~g-----------~~~~GvAp~a~l~~~~v~~~~g~~~~~~  108 (434)
T 1wmd_A           53 LYALGRT-------------NNANDTNGHGTHVAGSVLGNG-----------STNKGMAPQANLVFQSIMDSGGGLGGLP  108 (434)
T ss_dssp             EEETTTT-------------TCCCCSSSHHHHHHHHHHCCS-----------SSSCCSSTTSEEEEEECCCTTSSCTTSC
T ss_pred             eccccCC-------------CCCCCCCCcHHHHHHHHHcCC-----------CCceeeCCCCEEEEEEeecCCCcccccc
Confidence            3344321             345678899999999999863           235799999999999999764332  45


Q ss_pred             HHHHHHHHHHHHCCCCEEEEcCCCCCCCCCCCccccHHHHHHHHH-HHCCCEEEEecCCCCCCC--CCCCCCCCceEEEe
Q 005034          320 ADVVAAIDQAAQDGVDIISLSITPNRRPPGIATFFNPIDMALLSA-AKAGIFVVQAAGNTGPSP--KSMSSFSPWIFTVG  396 (718)
Q Consensus       320 ~~i~~ai~~a~~~g~~ViN~S~G~~~~~~~~~~~~~~~~~a~~~a-~~~GilvV~AAGN~g~~~--~~~~~~~~~vitVg  396 (718)
                      .++.++|+|++++|++|||||||.....     ......++++.+ .++|++||+||||+|...  ..+|+.++++|+||
T Consensus       109 ~~~~~ai~~a~~~g~~Vin~S~G~~~~~-----~~~~~~~~id~~~~~~gvlvV~AAGN~g~~~~~~~~Pa~~~~vitVg  183 (434)
T 1wmd_A          109 SNLQTLFSQAYSAGARIHTNSWGAAVNG-----AYTTDSRNVDDYVRKNDMTILFAAGNEGPNGGTISAPGTAKNAITVG  183 (434)
T ss_dssp             SSHHHHHHHHHHTTCSEEEECCCBCCTT-----CCCHHHHHHHHHHHHSSCEEEEECCSCTTSSSCCCBSTTCSSSEEEE
T ss_pred             HHHHHHHHHHHhcCCeEEEecCCCCcCC-----cCCHHHHHHHHHHhCCCeEEEEECCCCCCCCcccCCcccCCccEEEe
Confidence            6799999999999999999999986421     113344555544 689999999999999864  45688899999999


Q ss_pred             eeccCCceeeeEEeCCCceEeeeccCCCCCceEEEEEcccccCCCCcccCCccccccCCCCCCccCCcCceEEEEEeecc
Q 005034          397 AASHDRIYTNSIILGNSLTISGVGLAPGTDKMYTLISALHALNNNTTTTDDMYVGECQDSSNFNQDLVQGNLLICSYSIR  476 (718)
Q Consensus       397 A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~g~i~~~~~~~~  476 (718)
                      |++..+....                                                                      
T Consensus       184 a~~~~~~~~~----------------------------------------------------------------------  193 (434)
T 1wmd_A          184 ATENLRPSFG----------------------------------------------------------------------  193 (434)
T ss_dssp             EECCSCGGGC----------------------------------------------------------------------
T ss_pred             cccccCcccC----------------------------------------------------------------------
Confidence            9864321000                                                                      


Q ss_pred             cccCcchHHHHHHHHHhCCCcEEEEEeCCCccCcccCCCCCCCCeEEecCcchHHHHHHHHhccCCCccccceeeeecee
Q 005034          477 FVLGLSTIKQAFETAKNLSAAGIVFYMDPFVIGFQLNPTPMKMPGIIIPSPDDSKILLQYYNSSLERDEVTKKIIKFGAV  556 (718)
Q Consensus       477 ~~~~~~~~~~~~~~~~~~ga~~vi~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~  556 (718)
                                                                                                      
T Consensus       194 --------------------------------------------------------------------------------  193 (434)
T 1wmd_A          194 --------------------------------------------------------------------------------  193 (434)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             EEEecccccccCCCCCceeccccCCCCCCCCCCCCCCCCCCceeccCCceeecccCCCCCCc--cccCccccccCchhhh
Q 005034          557 ACILGGLKANFSNSAPKIMYYSARGPDPEDSFLDDADIMKPNLVAPGNSIWAAWSSLGTDSV--EFQGESFAMMSGTSMA  634 (718)
Q Consensus       557 ~~~~~~~~~~~~~~~~~~a~fSs~Gpt~~~~~~~~~g~~KPDI~APG~~I~Sa~~~~~~~~~--~~~~~~y~~~sGTSmA  634 (718)
                               .+....+.+++|||+||+.+       |++||||+|||++|+++.+.......  ...++.|..++|||||
T Consensus       194 ---------~~~~~~~~~a~fS~~G~~~~-------g~~kpdi~ApG~~i~s~~~~~~~~~~~~~~~~~~~~~~sGTS~A  257 (434)
T 1wmd_A          194 ---------SYADNINHVAQFSSRGPTKD-------GRIKPDVMAPGTFILSARSSLAPDSSFWANHDSKYAYMGGTSMA  257 (434)
T ss_dssp             ---------GGGSCTTSBCTTSCCCCCTT-------SCCCCCEEEECSSEEEECCTTCCGGGSSEEEETTEEEECSHHHH
T ss_pred             ---------cccCCCCccccccCCCCCCC-------CCCCceEEcCCCCeEecCCCCCCCcccccCCCCceEeecchhHH
Confidence                     00112346899999999986       79999999999999999854221000  0025689999999999


Q ss_pred             hHHHHHHHHHHHHhCCCC-----CHHHHHHHHHhcccccccCCCccccccccCCCCCCCCCCCCCccccccccccccCCC
Q 005034          635 APHIAGLAALIKQKFPSF-----SPSAIASALSTSATLYDKNGGPIMAQRAYAKPDENQSPATPFDMGSGFVNATASLDP  709 (718)
Q Consensus       635 aP~VAG~aALl~q~~p~l-----s~~~ik~~L~~TA~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~G~vn~~~Al~~  709 (718)
                      ||||||++|||+|++|++     ++++||++|++||+++...                   .+++.+|||++|+.+|++.
T Consensus       258 aP~vaG~aAll~~~~~~~~~~~~s~~~vk~~L~~tA~~~~~~-------------------~~~~~~G~G~vd~~~a~~~  318 (434)
T 1wmd_A          258 TPIVAGNVAQLREHFVKNRGITPKPSLLKAALIAGAADIGLG-------------------YPNGNQGWGRVTLDKSLNV  318 (434)
T ss_dssp             HHHHHHHHHHHHHHHHHHSSSCCCHHHHHHHHHHHCBCCSSC-------------------SSCTTTTTCBCCHHHHHTC
T ss_pred             HHHHHHHHHHHHHHHHhccCCCCCHHHHHHHHHcCCcccCCC-------------------CCCccCCcCeEeHHHhccc
Confidence            999999999999999865     8999999999999875321                   3367899999999999975


Q ss_pred             C
Q 005034          710 G  710 (718)
Q Consensus       710 ~  710 (718)
                      .
T Consensus       319 ~  319 (434)
T 1wmd_A          319 A  319 (434)
T ss_dssp             E
T ss_pred             c
Confidence            4


No 22 
>2iy9_A SUBA; toxin, shiga, plasmid; 1.8A {Escherichia coli}
Probab=100.00  E-value=9.4e-50  Score=429.40  Aligned_cols=273  Identities=18%  Similarity=0.159  Sum_probs=217.4

Q ss_pred             cCCCcccccccCCCCCCCC--CcEEEEEccccCCCCCCCcCCCCCCCCCCCCCCCccccccCCCCCCCCCceeeeeeecc
Q 005034          169 LGLPQGAWIQEGGYETAGE--GVVIGFIDTGIDPTHPSFADDASEHSYPVPSHFSGICEVTRDFPSGSCNRKLIGARHFA  246 (718)
Q Consensus       169 ~~~~~~~w~~~~~~~~~G~--gv~VaVIDtGid~~Hp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~  246 (718)
                      ++++. +|..     ++|+  ||+||||||||| +||+|.++..                              ..++|.
T Consensus        30 i~~~~-aw~~-----~~G~~~gv~VaViDsGid-~Hp~l~~~~~------------------------------~~~~~~   72 (347)
T 2iy9_A           30 IGLTE-TTMS-----LTDKNTPVVVSVVDSGVA-FIGGLSDSEF------------------------------AKFSFT   72 (347)
T ss_dssp             HTCCH-HHHH-----TSCTTSCCEEEEEESCCC-CCGGGTTCEE------------------------------EEEECB
T ss_pred             CChHH-HHHH-----hcCCCCCCEEEEEcCCCc-CChhhhcCcc------------------------------cCCccc
Confidence            44444 7876     6899  999999999999 9999986432                              233343


Q ss_pred             hhhhhcCccCCCCCCCCCCCCCCCccccccccccCCCCCccccccccCccccccCCceEEEEeecccCCCCCHHHHHHHH
Q 005034          247 ASAITRGIFNSSQDYASPFDGDGHGSHTASVAAGNHGIPVVVTGHHFGNASGMAPRSHIAVYKALYKSFGGFAADVVAAI  326 (718)
Q Consensus       247 ~~~~~~~~~~~~~~~~~~~d~~gHGThVAGiiag~~~~~~~~~g~~~~~~~GvAp~A~i~~~kv~~~~~~~~~~~i~~ai  326 (718)
                      ...       .......+.|..+|||||||||+|..            ++.||||+|+|+.+|+++.....   ++++||
T Consensus        73 ~~~-------~~~~~~~~~d~~gHGT~vAgiia~~~------------g~~GvAp~a~l~~~~v~~~~~~~---~~~~ai  130 (347)
T 2iy9_A           73 QDG-------SPFPVKKSEALYIHGTAMASLIASRY------------GIYGVYPHALISSRRVIPDGVQD---SWIRAI  130 (347)
T ss_dssp             TTC-------CSSCCSSSHHHHHHHHHHHHHHHCSS------------SSCCSSTTCEEEEEECCSSBCTT---HHHHHH
T ss_pred             CCC-------CCCCCCCCCCCCCcHHHHHHHHhccc------------CCcccCCCCEEEEEEEecCCCHH---HHHHHH
Confidence            220       00011234567899999999999871            35799999999999999763333   999999


Q ss_pred             HHHHHC------CCCEEEEcCCCCCCCCCCCccccHHHHHHHHHHHCCCEEEEecCCCCCC-------CCCCCCCCC---
Q 005034          327 DQAAQD------GVDIISLSITPNRRPPGIATFFNPIDMALLSAAKAGIFVVQAAGNTGPS-------PKSMSSFSP---  390 (718)
Q Consensus       327 ~~a~~~------g~~ViN~S~G~~~~~~~~~~~~~~~~~a~~~a~~~GilvV~AAGN~g~~-------~~~~~~~~~---  390 (718)
                      +|++++      +++|||||||.....    .....++++++.+.++|++||+||||+|..       ...+|+..+   
T Consensus       131 ~~a~~~~~~~~~~~~Vin~S~G~~~~~----~~~~~~~~ai~~a~~~gilvV~AAGN~g~~~~~~~~~~~~~Pa~~~~~~  206 (347)
T 2iy9_A          131 ESIMSNVFLAPGEEKIINISGGQKGVA----SASVWTELLSRMGRNNDRLIVAAVGNDGADIRKLSAQQRIWPAAYHPVS  206 (347)
T ss_dssp             HHHHTCTTSCTTEEEEEEESSCBCCC-----CCHHHHHHHHHHHHHTSCEEEEECCBSCCBTTTSCTTTSCBTTTCCCCS
T ss_pred             HHHHhhhhcccCCceEEEeccccCCCC----CcCHHHHHHHHHHHhCCeEEEEeCCCCCCCCCCcccccccCCCcCcccc
Confidence            999999      999999999975421    245788999999999999999999999985       456788888   


Q ss_pred             -------ceEEEeeecc--CCceeeeEEeCCCceEeeeccCCCCCceEEEEEcccccCCCCcccCCccccccCCCCCCcc
Q 005034          391 -------WIFTVGAASH--DRIYTNSIILGNSLTISGVGLAPGTDKMYTLISALHALNNNTTTTDDMYVGECQDSSNFNQ  461 (718)
Q Consensus       391 -------~vitVgA~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~  461 (718)
                             ++|+|||++.  ++...                                                        
T Consensus       207 ~~~~~~~~vi~Vga~~~~~~g~~~--------------------------------------------------------  230 (347)
T 2iy9_A          207 SVNKKQDPVIRVAALAQYRKGETP--------------------------------------------------------  230 (347)
T ss_dssp             HHHHHTCCEEEEEEECCCCTTSCC--------------------------------------------------------
T ss_pred             ccccccCCEEEEEEcccCCCCcee--------------------------------------------------------
Confidence                   9999999764  21100                                                        


Q ss_pred             CCcCceEEEEEeecccccCcchHHHHHHHHHhCCCcEEEEEeCCCccCcccCCCCCCCCeEEecCcchHHHHHHHHhccC
Q 005034          462 DLVQGNLLICSYSIRFVLGLSTIKQAFETAKNLSAAGIVFYMDPFVIGFQLNPTPMKMPGIIIPSPDDSKILLQYYNSSL  541 (718)
Q Consensus       462 ~~~~g~i~~~~~~~~~~~~~~~~~~~~~~~~~~ga~~vi~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~l~~~~~~~~  541 (718)
                                                                                                      
T Consensus       231 --------------------------------------------------------------------------------  230 (347)
T 2iy9_A          231 --------------------------------------------------------------------------------  230 (347)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             CCccccceeeeeceeEEEecccccccCCCCCceeccccCCCCCCCCCCCCCCCCCCceeccCCceeecccCCCCCCcccc
Q 005034          542 ERDEVTKKIIKFGAVACILGGLKANFSNSAPKIMYYSARGPDPEDSFLDDADIMKPNLVAPGNSIWAAWSSLGTDSVEFQ  621 (718)
Q Consensus       542 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~fSs~Gpt~~~~~~~~~g~~KPDI~APG~~I~Sa~~~~~~~~~~~~  621 (718)
                                                 ...+.++.||++||+            ||||+|||++|++++          +
T Consensus       231 ---------------------------~~~~~~~~fS~~G~~------------~~di~APG~~i~s~~----------~  261 (347)
T 2iy9_A          231 ---------------------------VLHGGGITGSRFGNN------------WVDIAAPGQNITFLR----------P  261 (347)
T ss_dssp             ---------------------------CBCCCSSSCBCBCTT------------TCSEEEECSSEEEEC----------T
T ss_pred             ---------------------------cccCCCCCCCCCCCC------------CCEEEeCCCCeEeec----------C
Confidence                                       001235789999983            449999999999998          5


Q ss_pred             CccccccCchhhhhHHHHHHHHHHHHhCCCCCHHHHHHHHHhcccccccCCCccccccccCCCCCCCCCCCCCccccccc
Q 005034          622 GESFAMMSGTSMAAPHIAGLAALIKQKFPSFSPSAIASALSTSATLYDKNGGPIMAQRAYAKPDENQSPATPFDMGSGFV  701 (718)
Q Consensus       622 ~~~y~~~sGTSmAaP~VAG~aALl~q~~p~ls~~~ik~~L~~TA~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~G~v  701 (718)
                      ++.|..++|||||||||||++|||+|++|++++.|||++|++||+++...+                    +..+|+|+|
T Consensus       262 ~~~~~~~sGTS~AaP~VaG~aAll~~~~p~lt~~~v~~~L~~tA~~~~~~~--------------------~~~~G~G~l  321 (347)
T 2iy9_A          262 DAKTGTGSGTSEATAIVSGVLAAMTSCNPRATATELKRTLLESADKYPSLV--------------------DKVTEGRVL  321 (347)
T ss_dssp             TSCEEEECSHHHHHHHHHHHHHHHHHHCTTSCHHHHHHHHHHHSEECGGGT--------------------TTSGGGEEC
T ss_pred             CCCeEeccchHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHhCccCCCCC--------------------CccccCCEe
Confidence            668999999999999999999999999999999999999999999876432                    257999999


Q ss_pred             cccccCCC
Q 005034          702 NATASLDP  709 (718)
Q Consensus       702 n~~~Al~~  709 (718)
                      |+.+||+.
T Consensus       322 d~~~A~~~  329 (347)
T 2iy9_A          322 NAEKAISM  329 (347)
T ss_dssp             CHHHHHHH
T ss_pred             cHHHHHHH
Confidence            99999864


No 23 
>3lpc_A APRB2; protease, subtilase, virulence factor, hydrolase; 1.70A {Dichelobacter nodosus} PDB: 3lpa_A 3lpd_A 3ti9_A 3ti7_A
Probab=100.00  E-value=2.7e-49  Score=424.92  Aligned_cols=300  Identities=23%  Similarity=0.346  Sum_probs=219.9

Q ss_pred             cccccCCCCCCCCCcEEEEEccccCCCCCCCcCCCCCCCCCCCCCCCccccccCCCCCCCCCceeeeeeecchhhhhcCc
Q 005034          175 AWIQEGGYETAGEGVVIGFIDTGIDPTHPSFADDASEHSYPVPSHFSGICEVTRDFPSGSCNRKLIGARHFAASAITRGI  254 (718)
Q Consensus       175 ~w~~~~~~~~~G~gv~VaVIDtGid~~Hp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~  254 (718)
                      +|..    +++|+||+||||||||+ +||+|.++...     ...+........+. ........ ...++.+....   
T Consensus        24 aw~~----g~~G~gV~VaViDtGi~-~hp~l~~~~~~-----~~~~~~~~~~~~d~-~~~~~~~~-~~~~~~~~~~~---   88 (340)
T 3lpc_A           24 VWDM----GFTGQNVVVAVVDTGIL-HHRDLNANVLP-----GYDFISNSQISLDG-DGRDADPF-DEGDWFDNWAC---   88 (340)
T ss_dssp             HHHH----TCSCTTCEEEEEESCBC-CCTTTGGGBCC-----CEECCCCHHHHCSS-SSSBSCCB-CCCCCBCTTTT---
T ss_pred             HHHh----cCCCCCeEEEEEcCCCC-CChhhhccccc-----CccccCCccccccC-CCccCCcc-ccccccccccc---
Confidence            7876    78999999999999998 99999976541     00110000000000 00000000 00000000000   


Q ss_pred             cCCCCCCCCCCCCCCCccccccccccCCCCCccccccccCccccccCCceEEEEeecccCCCCCHHHHHHHHHHHHH---
Q 005034          255 FNSSQDYASPFDGDGHGSHTASVAAGNHGIPVVVTGHHFGNASGMAPRSHIAVYKALYKSFGGFAADVVAAIDQAAQ---  331 (718)
Q Consensus       255 ~~~~~~~~~~~d~~gHGThVAGiiag~~~~~~~~~g~~~~~~~GvAp~A~i~~~kv~~~~~~~~~~~i~~ai~~a~~---  331 (718)
                      .....+.....|..||||||||||+|..+++        .++.||||+|+|+.+|++... ++..++++++|+|+++   
T Consensus        89 ~~~~~~~~~~~d~~gHGT~vAgiia~~~~~~--------~g~~GvAp~a~l~~~~v~~~~-~~~~~~~~~ai~~a~~~~~  159 (340)
T 3lpc_A           89 GGRPDPRKERSDSSWHGSHVAGTIAAVTNNR--------IGVAGVAYGAKVVPVRALGRC-GGYDSDISDGLYWAAGGRI  159 (340)
T ss_dssp             SCTTCGGGSCBCCCCHHHHHHHHHHCCCSSS--------SSCCCTTTTSEEEEEECCBTT-BCCHHHHHHHHHHHHTCCC
T ss_pred             cCCCCcccCCCCCCCCHHHHHHHHHccCCCC--------CcceeecCCCEEEEEEEecCC-CCcHHHHHHHHHHHhcccc
Confidence            0011112234688899999999999986443        346899999999999999874 4788999999999998   


Q ss_pred             -------CCCCEEEEcCCCCCCCCCCCccccHHHHHHHHHHHCCCEEEEecCCCCCCCC-CCCCCCCceEEEeeeccCCc
Q 005034          332 -------DGVDIISLSITPNRRPPGIATFFNPIDMALLSAAKAGIFVVQAAGNTGPSPK-SMSSFSPWIFTVGAASHDRI  403 (718)
Q Consensus       332 -------~g~~ViN~S~G~~~~~~~~~~~~~~~~~a~~~a~~~GilvV~AAGN~g~~~~-~~~~~~~~vitVgA~~~~~~  403 (718)
                             .+++|||||||....      ....++.+++.+.++|++||+||||+|.... .+|+..+++|+|||++.+  
T Consensus       160 ~~~~~~~~~~~Vin~S~G~~~~------~~~~~~~~~~~a~~~gi~vV~AAGN~g~~~~~~~Pa~~~~vi~Vga~~~~--  231 (340)
T 3lpc_A          160 AGIPENRNPAKVINMSLGSDGQ------CSYNAQTMIDRATRLGALVVVAAGNENQNASNTWPTSCNNVLSVGATTSR--  231 (340)
T ss_dssp             TTSCCCSSCCSEEEECCCEESC------CCHHHHHHHHHHHHHTCEEEEECCSSSSBGGGEETTTSSSCEEEEEECTT--
T ss_pred             cccccccCCCeEEEeCcCCCCC------cchhHHHHHHHHHhCCcEEEEeCCCCCCCCCCcCCccCCceEEEecCCCC--
Confidence                   899999999997532      2456888899999999999999999998654 468889999999996432  


Q ss_pred             eeeeEEeCCCceEeeeccCCCCCceEEEEEcccccCCCCcccCCccccccCCCCCCccCCcCceEEEEEeecccccCcch
Q 005034          404 YTNSIILGNSLTISGVGLAPGTDKMYTLISALHALNNNTTTTDDMYVGECQDSSNFNQDLVQGNLLICSYSIRFVLGLST  483 (718)
Q Consensus       404 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~g~i~~~~~~~~~~~~~~~  483 (718)
                                                                                                      
T Consensus       232 --------------------------------------------------------------------------------  231 (340)
T 3lpc_A          232 --------------------------------------------------------------------------------  231 (340)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             HHHHHHHHHhCCCcEEEEEeCCCccCcccCCCCCCCCeEEecCcchHHHHHHHHhccCCCccccceeeeeceeEEEeccc
Q 005034          484 IKQAFETAKNLSAAGIVFYMDPFVIGFQLNPTPMKMPGIIIPSPDDSKILLQYYNSSLERDEVTKKIIKFGAVACILGGL  563 (718)
Q Consensus       484 ~~~~~~~~~~~ga~~vi~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  563 (718)
                                                                                                      
T Consensus       232 --------------------------------------------------------------------------------  231 (340)
T 3lpc_A          232 --------------------------------------------------------------------------------  231 (340)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             ccccCCCCCceeccccCCCCCCCCCCCCCCCCCCceeccCCceeecccCCCCCCccccCccccccCchhhhhHHHHHHHH
Q 005034          564 KANFSNSAPKIMYYSARGPDPEDSFLDDADIMKPNLVAPGNSIWAAWSSLGTDSVEFQGESFAMMSGTSMAAPHIAGLAA  643 (718)
Q Consensus       564 ~~~~~~~~~~~a~fSs~Gpt~~~~~~~~~g~~KPDI~APG~~I~Sa~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aA  643 (718)
                              +.++.||++||.+             ||+|||.+|+++++.....   ...+.|..++|||||||||||++|
T Consensus       232 --------~~~~~~S~~g~~~-------------di~ApG~~i~s~~~~~~~~---~~~~~~~~~sGTS~AaP~vaG~aA  287 (340)
T 3lpc_A          232 --------GIRASFSNYGVDV-------------DLAAPGQDILSTVDSGTRR---PVSDAYSFMAGTSMATPHVSGVAA  287 (340)
T ss_dssp             --------SSBCTTCCBSTTC-------------CEEEECSSEEEEEESCSSS---CCSEEEEEECSHHHHHHHHHHHHH
T ss_pred             --------CCcCCCCCCCCCc-------------eEEecCCCeecccCCCCcC---CCCCcceecccHhHHHHHHHHHHH
Confidence                    2367899999755             9999999999998654321   123469999999999999999999


Q ss_pred             HHHHh-C---CCCCHHHHHHHHHhcccccccCCCccccccccCCCCCCCCCCCCCccccccccccccCCCC
Q 005034          644 LIKQK-F---PSFSPSAIASALSTSATLYDKNGGPIMAQRAYAKPDENQSPATPFDMGSGFVNATASLDPG  710 (718)
Q Consensus       644 Ll~q~-~---p~ls~~~ik~~L~~TA~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~G~vn~~~Al~~~  710 (718)
                      ||+|+ +   |.+++++||++|++||+++..                    .++..+|+|+||+.+||+..
T Consensus       288 ll~~~~~~~~p~lt~~~v~~~L~~tA~~~~~--------------------~~~~~~G~G~vd~~~Av~~~  338 (340)
T 3lpc_A          288 LVISAANSVNKNLTPAELKDVLVSTTSPFNG--------------------RLDRALGSGIVDAEAAVNSV  338 (340)
T ss_dssp             HHHHHHHHTTCCCCHHHHHHHHHHTCBCCSS--------------------CCSSCCCSSBCCHHHHHHHH
T ss_pred             HHHHhhhhhCCCCCHHHHHHHHHhcCCcCCC--------------------CCCCCcccceecHHHHHHHH
Confidence            99998 5   999999999999999998642                    12568999999999998754


No 24 
>1sh7_A Extracellular subtilisin-like serine proteinase; cold adaptation, psychrotrophic, subtilisin-like proteinase, depentent, hydrolase; HET: PMS; 1.84A {Vibrio SP} PDB: 1s2n_A*
Probab=100.00  E-value=1.2e-47  Score=399.93  Aligned_cols=235  Identities=29%  Similarity=0.447  Sum_probs=201.2

Q ss_pred             cccccCCCCCCCCCcEEEEEccccCCCCCCCcCCCCCCCCCCCCCCCccccccCCCCCCCCCceeeeeeecchhhhhcCc
Q 005034          175 AWIQEGGYETAGEGVVIGFIDTGIDPTHPSFADDASEHSYPVPSHFSGICEVTRDFPSGSCNRKLIGARHFAASAITRGI  254 (718)
Q Consensus       175 ~w~~~~~~~~~G~gv~VaVIDtGid~~Hp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~  254 (718)
                      +|..    +++|+||+|||||||||++||+|.++.                              ...++|...      
T Consensus        21 aw~~----~~~G~gv~VaViDtGvd~~h~~l~~~~------------------------------~~~~~~~~~------   60 (284)
T 1sh7_A           21 NYNA----NFDGFGVTAYVIDTGVNNNHEEFGGRS------------------------------VSGYDFVDN------   60 (284)
T ss_dssp             BCCC----SCCCTTCEEEEEESCCCTTCTTTTTCE------------------------------EEEEETTTT------
T ss_pred             hhhc----CCCCCCCEEEEEcCCCCCCChhHcCCc------------------------------cccccccCC------
Confidence            6665    689999999999999999999998642                              233444332      


Q ss_pred             cCCCCCCCCCCCCCCCccccccccccCCCCCccccccccCccccccCCceEEEEeecccCCCCCHHHHHHHHHHHHHC--
Q 005034          255 FNSSQDYASPFDGDGHGSHTASVAAGNHGIPVVVTGHHFGNASGMAPRSHIAVYKALYKSFGGFAADVVAAIDQAAQD--  332 (718)
Q Consensus       255 ~~~~~~~~~~~d~~gHGThVAGiiag~~~~~~~~~g~~~~~~~GvAp~A~i~~~kv~~~~~~~~~~~i~~ai~~a~~~--  332 (718)
                            ...+.|..+|||||||||+|..              .||||+|+|+.+|+++..+.+..++++++|+|++++  
T Consensus        61 ------~~~~~d~~gHGT~vAgiia~~~--------------~GvAp~a~l~~~kv~~~~g~~~~~~~~~ai~~a~~~~~  120 (284)
T 1sh7_A           61 ------DADSSDCNGHGTHVAGTIGGSQ--------------YGVAKNVNIVGVRVLSCSGSGTTSGVISGVDWVAQNAS  120 (284)
T ss_dssp             ------BSCCCCSSSHHHHHHHHHHCTT--------------TCSSTTCEEEEEECBCTTSCBCHHHHHHHHHHHHHHCC
T ss_pred             ------CCCCCCCCCcHHHHHHHHhccc--------------CCcCCCCEEEEEEeeCCCCCcCHHHHHHHHHHHHhCCC
Confidence                  1345678999999999999863              599999999999999886668899999999999984  


Q ss_pred             CCCEEEEcCCCCCCCCCCCccccHHHHHHHHHHHCCCEEEEecCCCCCCC-CCCCCCCCceEEEeeeccCCceeeeEEeC
Q 005034          333 GVDIISLSITPNRRPPGIATFFNPIDMALLSAAKAGIFVVQAAGNTGPSP-KSMSSFSPWIFTVGAASHDRIYTNSIILG  411 (718)
Q Consensus       333 g~~ViN~S~G~~~~~~~~~~~~~~~~~a~~~a~~~GilvV~AAGN~g~~~-~~~~~~~~~vitVgA~~~~~~~~~~~~~~  411 (718)
                      +++|||||||...        ...++++++.+.++|++||+||||+|... ..+|+..+++|+|||++.+          
T Consensus       121 ~~~Vin~S~G~~~--------~~~~~~ai~~a~~~gi~vV~AAGN~g~~~~~~~Pa~~~~vi~Vga~~~~----------  182 (284)
T 1sh7_A          121 GPSVANMSLGGGQ--------STALDSAVQGAIQSGVSFMLAAGNSNADACNTSPARVPSGVTVGSTTSS----------  182 (284)
T ss_dssp             SSEEEEECCCBSC--------CHHHHHHHHHHHHTTCEEEEECCSSSSBGGGSBTTTCTTSEEEEEECTT----------
T ss_pred             CCcEEEeCCCCCC--------CHHHHHHHHHHHHCCCEEEEECCcCCCCCCccccccCCCeEEEEEecCC----------
Confidence            7999999999752        36788999999999999999999999864 3568889999999996432          


Q ss_pred             CCceEeeeccCCCCCceEEEEEcccccCCCCcccCCccccccCCCCCCccCCcCceEEEEEeecccccCcchHHHHHHHH
Q 005034          412 NSLTISGVGLAPGTDKMYTLISALHALNNNTTTTDDMYVGECQDSSNFNQDLVQGNLLICSYSIRFVLGLSTIKQAFETA  491 (718)
Q Consensus       412 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~g~i~~~~~~~~~~~~~~~~~~~~~~~  491 (718)
                                                                                                      
T Consensus       183 --------------------------------------------------------------------------------  182 (284)
T 1sh7_A          183 --------------------------------------------------------------------------------  182 (284)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             HhCCCcEEEEEeCCCccCcccCCCCCCCCeEEecCcchHHHHHHHHhccCCCccccceeeeeceeEEEecccccccCCCC
Q 005034          492 KNLSAAGIVFYMDPFVIGFQLNPTPMKMPGIIIPSPDDSKILLQYYNSSLERDEVTKKIIKFGAVACILGGLKANFSNSA  571 (718)
Q Consensus       492 ~~~ga~~vi~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  571 (718)
                                                                                                      
T Consensus       183 --------------------------------------------------------------------------------  182 (284)
T 1sh7_A          183 --------------------------------------------------------------------------------  182 (284)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             CceeccccCCCCCCCCCCCCCCCCCCceeccCCceeecccCCCCCCccccCccccccCchhhhhHHHHHHHHHHHHhCCC
Q 005034          572 PKIMYYSARGPDPEDSFLDDADIMKPNLVAPGNSIWAAWSSLGTDSVEFQGESFAMMSGTSMAAPHIAGLAALIKQKFPS  651 (718)
Q Consensus       572 ~~~a~fSs~Gpt~~~~~~~~~g~~KPDI~APG~~I~Sa~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~q~~p~  651 (718)
                      +.++.||++||+.             ||+|||++|++++          .++.|..++|||||||||||++|||+|++|+
T Consensus       183 ~~~~~~S~~G~~~-------------di~ApG~~i~s~~----------~~~~~~~~sGTS~AaP~vaG~aAll~~~~p~  239 (284)
T 1sh7_A          183 DSRSSFSNWGSCV-------------DLFAPGSQIKSAW----------YDGGYKTISGTSMATPHVAGVAALYLQENNG  239 (284)
T ss_dssp             SBBCTTCCBSTTC-------------CEEEECSSEEEEC----------TTSSEEEECSHHHHHHHHHHHHHHHHHHCTT
T ss_pred             CCcCcccCCCCcc-------------EEEeccCCeEEec----------CCCCEEEccChHHHHHHHHHHHHHHHHHCCC
Confidence            2367899999976             8999999999998          5568999999999999999999999999999


Q ss_pred             CCHHHHHHHHHhccccccc
Q 005034          652 FSPSAIASALSTSATLYDK  670 (718)
Q Consensus       652 ls~~~ik~~L~~TA~~~~~  670 (718)
                      ++++|||++|++||++...
T Consensus       240 lt~~~v~~~L~~tA~~~~~  258 (284)
T 1sh7_A          240 LTPLQLTGLLNSRASENKV  258 (284)
T ss_dssp             CCHHHHHHHHHHHSEESCC
T ss_pred             CCHHHHHHHHHhhCccCCc
Confidence            9999999999999987644


No 25 
>4dzt_A Aqualysin-1, aqualysin-I; serine protease, calcium binding, inhibitor, hydrolase-hydro inhibitor complex; HET: PMS; 1.95A {Thermus aquaticus}
Probab=100.00  E-value=7.6e-47  Score=393.48  Aligned_cols=236  Identities=29%  Similarity=0.400  Sum_probs=201.1

Q ss_pred             cccccCCCCCCCCCcEEEEEccccCCCCCCCcCCCCCCCCCCCCCCCccccccCCCCCCCCCceeeeeeecchhhhhcCc
Q 005034          175 AWIQEGGYETAGEGVVIGFIDTGIDPTHPSFADDASEHSYPVPSHFSGICEVTRDFPSGSCNRKLIGARHFAASAITRGI  254 (718)
Q Consensus       175 ~w~~~~~~~~~G~gv~VaVIDtGid~~Hp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~  254 (718)
                      +|..    +++|+||+|||||||||++||+|.++..                              ..++|..       
T Consensus        23 a~~~----~~~G~gv~VaViDtGvd~~h~~l~~~~~------------------------------~~~~~~~-------   61 (276)
T 4dzt_A           23 SYTY----TATGRGVNVYVIDTGIRTTHREFGGRAR------------------------------VGYDALG-------   61 (276)
T ss_dssp             CEEC----SCCCTTCEEEEEESCCCTTCGGGTTCEE------------------------------EEEETTS-------
T ss_pred             ceec----CCCCCCcEEEEEccCCCCCChhHccCee------------------------------ccccCCC-------
Confidence            6776    6899999999999999999999986432                              2233321       


Q ss_pred             cCCCCCCCCCCCCCCCccccccccccCCCCCccccccccCccccccCCceEEEEeecccCCCCCHHHHHHHHHHHHHC--
Q 005034          255 FNSSQDYASPFDGDGHGSHTASVAAGNHGIPVVVTGHHFGNASGMAPRSHIAVYKALYKSFGGFAADVVAAIDQAAQD--  332 (718)
Q Consensus       255 ~~~~~~~~~~~d~~gHGThVAGiiag~~~~~~~~~g~~~~~~~GvAp~A~i~~~kv~~~~~~~~~~~i~~ai~~a~~~--  332 (718)
                             ..+.|..||||||||||+|..              .||||+|+|+.+|+++....+...+++++|+|++++  
T Consensus        62 -------~~~~d~~gHGT~vAgiiag~~--------------~GvAp~a~l~~~~v~~~~~~~~~~~~~~ai~~~~~~~~  120 (276)
T 4dzt_A           62 -------GNGQDCNGHGTHVAGTIGGVT--------------YGVAKAVNLYAVRVLDCNGSGSTSGVIAGVDWVTRNHR  120 (276)
T ss_dssp             -------SCSCCSSSHHHHHHHHHHCTT--------------TCSSTTCEEEEEECSCTTSCCCHHHHHHHHHHHHHHCC
T ss_pred             -------CCCCCCCCCHHHHHHHHHccc--------------cCCCCCCEEEEEEEeCCCCCcCHHHHHHHHHHHHhcCC
Confidence                   234578899999999999863              599999999999999986778999999999999987  


Q ss_pred             CCCEEEEcCCCCCCCCCCCccccHHHHHHHHHHHCCCEEEEecCCCCCCCCC-CCCCCCceEEEeeeccCCceeeeEEeC
Q 005034          333 GVDIISLSITPNRRPPGIATFFNPIDMALLSAAKAGIFVVQAAGNTGPSPKS-MSSFSPWIFTVGAASHDRIYTNSIILG  411 (718)
Q Consensus       333 g~~ViN~S~G~~~~~~~~~~~~~~~~~a~~~a~~~GilvV~AAGN~g~~~~~-~~~~~~~vitVgA~~~~~~~~~~~~~~  411 (718)
                      +++|||||||...        ...++++++.+.++|++||+||||+|..... +|+..+++|+|||++.+          
T Consensus       121 ~~~vin~S~g~~~--------~~~~~~a~~~a~~~gvlvv~AAGN~g~~~~~~~Pa~~~~vi~Vga~~~~----------  182 (276)
T 4dzt_A          121 RPAVANMSLGGGV--------STALDNAVKNSIAAGVVYAVAAGNDNANACNYSPARVAEALTVGATTSS----------  182 (276)
T ss_dssp             SSEEEEECCCEEC--------CHHHHHHHHHHHHTTCEEEEECCSSSSBGGGEETTTCTTSEEEEEECTT----------
T ss_pred             CCeEEEECCCCCC--------CHHHHHHHHHHHhCCCEEEEECCCCCCCCCCcCcccCCCEEEEEEECCC----------
Confidence            8999999999642        4688999999999999999999999986544 48889999999996432          


Q ss_pred             CCceEeeeccCCCCCceEEEEEcccccCCCCcccCCccccccCCCCCCccCCcCceEEEEEeecccccCcchHHHHHHHH
Q 005034          412 NSLTISGVGLAPGTDKMYTLISALHALNNNTTTTDDMYVGECQDSSNFNQDLVQGNLLICSYSIRFVLGLSTIKQAFETA  491 (718)
Q Consensus       412 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~g~i~~~~~~~~~~~~~~~~~~~~~~~  491 (718)
                                                                                                      
T Consensus       183 --------------------------------------------------------------------------------  182 (276)
T 4dzt_A          183 --------------------------------------------------------------------------------  182 (276)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             HhCCCcEEEEEeCCCccCcccCCCCCCCCeEEecCcchHHHHHHHHhccCCCccccceeeeeceeEEEecccccccCCCC
Q 005034          492 KNLSAAGIVFYMDPFVIGFQLNPTPMKMPGIIIPSPDDSKILLQYYNSSLERDEVTKKIIKFGAVACILGGLKANFSNSA  571 (718)
Q Consensus       492 ~~~ga~~vi~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  571 (718)
                                                                                                      
T Consensus       183 --------------------------------------------------------------------------------  182 (276)
T 4dzt_A          183 --------------------------------------------------------------------------------  182 (276)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             CceeccccCCCCCCCCCCCCCCCCCCceeccCCceeecccCCCCCCccccCccccccCchhhhhHHHHHHHHHHHHhCCC
Q 005034          572 PKIMYYSARGPDPEDSFLDDADIMKPNLVAPGNSIWAAWSSLGTDSVEFQGESFAMMSGTSMAAPHIAGLAALIKQKFPS  651 (718)
Q Consensus       572 ~~~a~fSs~Gpt~~~~~~~~~g~~KPDI~APG~~I~Sa~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~q~~p~  651 (718)
                      +.++.||++||+.             ||+|||.+|.+++...        ...|..++|||||||+|||++|||+|++|+
T Consensus       183 ~~~~~~S~~g~~~-------------dv~ApG~~i~s~~~~~--------~~~~~~~sGTS~AaP~vaG~aAll~~~~p~  241 (276)
T 4dzt_A          183 DARASFSNYGSCV-------------DLFAPGASIPSAWYTS--------DTATQTLNGTSMATPHVAGVAALYLEQNPS  241 (276)
T ss_dssp             SBBCTTCCBSTTC-------------CEEEECSSEEEECTTS--------SSCEEEECSHHHHHHHHHHHHHHHHHHCTT
T ss_pred             CCcCCcCCCCCCc-------------eEEeCCCCeEccccCC--------CCceEEeeEHHHHHHHHHHHHHHHHHHCCC
Confidence            2367899999987             8999999999998432        347899999999999999999999999999


Q ss_pred             CCHHHHHHHHHhcccccccC
Q 005034          652 FSPSAIASALSTSATLYDKN  671 (718)
Q Consensus       652 ls~~~ik~~L~~TA~~~~~~  671 (718)
                      ++++|||++|++||++....
T Consensus       242 lt~~~v~~~L~~tA~~~~~~  261 (276)
T 4dzt_A          242 ATPASVASAILNGATTGRLS  261 (276)
T ss_dssp             CCHHHHHHHHHHHSEESCCB
T ss_pred             CCHHHHHHHHHhhCcCCccC
Confidence            99999999999999986543


No 26 
>2pwa_A Proteinase K; structure, alanine boronic acid, hydrolase; 0.83A {Engyodontium album} SCOP: c.41.1.1 PDB: 1p7v_A 1p7w_A 2dqk_A 2duj_A 2g4v_A 2hd4_A 2hpz_A 2id8_A 2pq2_A 1ic6_A 2pwb_A* 2pyz_A* 2v8b_A 3aj8_A 3aj9_A 3dyb_A* 3gt3_A* 3gt4_A* 3l1k_A 3osz_A ...
Probab=100.00  E-value=2e-47  Score=397.19  Aligned_cols=225  Identities=30%  Similarity=0.465  Sum_probs=194.5

Q ss_pred             CCCCCcEEEEEccccCCCCCCCcCCCCCCCCCCCCCCCccccccCCCCCCCCCceeeeeeecchhhhhcCccCCCCCCCC
Q 005034          184 TAGEGVVIGFIDTGIDPTHPSFADDASEHSYPVPSHFSGICEVTRDFPSGSCNRKLIGARHFAASAITRGIFNSSQDYAS  263 (718)
Q Consensus       184 ~~G~gv~VaVIDtGid~~Hp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~  263 (718)
                      .+|+||+|||||||||++||+|.++..                              ..++|.               ..
T Consensus        28 ~~G~gv~VaViDsGvd~~H~~l~~~~~------------------------------~~~~~~---------------~~   62 (279)
T 2pwa_A           28 SAGQGSCVYVIDTGIEASHPEFEGRAQ------------------------------MVKTYY---------------YS   62 (279)
T ss_dssp             TTTTTEEEEEEESCCCTTCGGGTTCEE------------------------------EEEESS---------------SC
T ss_pred             CCCCCCEEEEEeCCCCCCChhHhCccc------------------------------cccCCC---------------CC
Confidence            789999999999999999999986422                              223332               12


Q ss_pred             CCCCCCCccccccccccCCCCCccccccccCccccccCCceEEEEeecccCCCCCHHHHHHHHHHHHHCCC-------CE
Q 005034          264 PFDGDGHGSHTASVAAGNHGIPVVVTGHHFGNASGMAPRSHIAVYKALYKSFGGFAADVVAAIDQAAQDGV-------DI  336 (718)
Q Consensus       264 ~~d~~gHGThVAGiiag~~~~~~~~~g~~~~~~~GvAp~A~i~~~kv~~~~~~~~~~~i~~ai~~a~~~g~-------~V  336 (718)
                      +.|..+|||||||||+|+              ..||||+|+|+.+|+++.++.+..++++++|+|++++++       +|
T Consensus        63 ~~d~~gHGT~vAgiia~~--------------~~GvAp~a~i~~~~v~~~~g~~~~~~~~~ai~~a~~~~~~~~~~~~~V  128 (279)
T 2pwa_A           63 SRDGNGHGTHCAGTVGSR--------------TYGVAKKTQLFGVKVLDDNGSGQYSTIIAGMDFVASDKNNRNCPKGVV  128 (279)
T ss_dssp             SSCSSSHHHHHHHHHHCT--------------TTCSSTTCEEEEEECSCTTSCCCHHHHHHHHHHHHHHGGGSCCTTEEE
T ss_pred             CCCCCCCHHHHHHHHHhc--------------ccccCCCCEEEEEEeEcCCCCcCHHHHHHHHHHHHhcCccccCCCccE
Confidence            457889999999999986              259999999999999988666889999999999999887       99


Q ss_pred             EEEcCCCCCCCCCCCccccHHHHHHHHHHHCCCEEEEecCCCCCCCC-CCCCCCCceEEEeeeccCCceeeeEEeCCCce
Q 005034          337 ISLSITPNRRPPGIATFFNPIDMALLSAAKAGIFVVQAAGNTGPSPK-SMSSFSPWIFTVGAASHDRIYTNSIILGNSLT  415 (718)
Q Consensus       337 iN~S~G~~~~~~~~~~~~~~~~~a~~~a~~~GilvV~AAGN~g~~~~-~~~~~~~~vitVgA~~~~~~~~~~~~~~~~~~  415 (718)
                      ||||||..        +.+.++++++.+.++|++||+||||+|.+.. .+|+..+++|+|||++.+              
T Consensus       129 in~S~G~~--------~~~~~~~ai~~a~~~gi~vV~AAGN~g~~~~~~~Pa~~~~vi~Vga~~~~--------------  186 (279)
T 2pwa_A          129 ASLSLGGG--------YSSSVNSAAARLQSSGVMVAVAAGNNNADARNYSPASEPSVCTVGASDRY--------------  186 (279)
T ss_dssp             EEECCCEE--------CCHHHHHHHHHHHHTTEEEEEECCSSSSBGGGEETTTCTTSEEEEEECTT--------------
T ss_pred             EEecCCCC--------CCHHHHHHHHHHHHCCCEEEEECCCCCCcCCCcCcccCCcEEEEEEecCC--------------
Confidence            99999964        2468889999999999999999999998653 468889999999996432              


Q ss_pred             EeeeccCCCCCceEEEEEcccccCCCCcccCCccccccCCCCCCccCCcCceEEEEEeecccccCcchHHHHHHHHHhCC
Q 005034          416 ISGVGLAPGTDKMYTLISALHALNNNTTTTDDMYVGECQDSSNFNQDLVQGNLLICSYSIRFVLGLSTIKQAFETAKNLS  495 (718)
Q Consensus       416 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~g~i~~~~~~~~~~~~~~~~~~~~~~~~~~g  495 (718)
                                                                                                      
T Consensus       187 --------------------------------------------------------------------------------  186 (279)
T 2pwa_A          187 --------------------------------------------------------------------------------  186 (279)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             CcEEEEEeCCCccCcccCCCCCCCCeEEecCcchHHHHHHHHhccCCCccccceeeeeceeEEEecccccccCCCCCcee
Q 005034          496 AAGIVFYMDPFVIGFQLNPTPMKMPGIIIPSPDDSKILLQYYNSSLERDEVTKKIIKFGAVACILGGLKANFSNSAPKIM  575 (718)
Q Consensus       496 a~~vi~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a  575 (718)
                                                                                                  +.++
T Consensus       187 ----------------------------------------------------------------------------~~~~  190 (279)
T 2pwa_A          187 ----------------------------------------------------------------------------DRRS  190 (279)
T ss_dssp             ----------------------------------------------------------------------------SBBC
T ss_pred             ----------------------------------------------------------------------------CCcC
Confidence                                                                                        2367


Q ss_pred             ccccCCCCCCCCCCCCCCCCCCceeccCCceeecccCCCCCCccccCccccccCchhhhhHHHHHHHHHHHHhCCCCCHH
Q 005034          576 YYSARGPDPEDSFLDDADIMKPNLVAPGNSIWAAWSSLGTDSVEFQGESFAMMSGTSMAAPHIAGLAALIKQKFPSFSPS  655 (718)
Q Consensus       576 ~fSs~Gpt~~~~~~~~~g~~KPDI~APG~~I~Sa~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~q~~p~ls~~  655 (718)
                      .||++||++             ||+|||.+|++++          .++.|..++|||||||||||++|||+|+ |++++.
T Consensus       191 ~~S~~G~~~-------------di~APG~~i~s~~----------~~~~~~~~sGTS~AaP~VaG~aAll~~~-p~lt~~  246 (279)
T 2pwa_A          191 SFSNYGSVL-------------DIFGPGTDILSTW----------IGGSTRSISGTSMATPHVAGLAAYLMTL-GKTTAA  246 (279)
T ss_dssp             TTCCBSTTC-------------CEEEECSSEEEEE----------TTTEEEEECSHHHHHHHHHHHHHHHHHT-TSCCTT
T ss_pred             CcCCCCCcc-------------eEEEecCCeEEee----------cCCCEEEcCChHHHHHHHHHHHHHHHhC-CCCCHH
Confidence            899999976             8999999999998          5568999999999999999999999999 999999


Q ss_pred             HHHHHHHhcccccc
Q 005034          656 AIASALSTSATLYD  669 (718)
Q Consensus       656 ~ik~~L~~TA~~~~  669 (718)
                      |||++|++||++..
T Consensus       247 ~v~~~L~~tA~~~~  260 (279)
T 2pwa_A          247 SACRYIADTANKGD  260 (279)
T ss_dssp             THHHHHHHHSEESC
T ss_pred             HHHHHHHHhCcccc
Confidence            99999999998753


No 27 
>2b6n_A Proteinase K; S binding, substrate specificity, proteinase K, subtilase, psychrotrophic, psychrophilic, hydrolase; 1.80A {Serratia SP}
Probab=100.00  E-value=9e-47  Score=392.76  Aligned_cols=236  Identities=30%  Similarity=0.414  Sum_probs=199.7

Q ss_pred             cccccCCCCCCCCCcEEEEEccccCCCCCCCcCCCCCCCCCCCCCCCccccccCCCCCCCCCceeeeeeecchhhhhcCc
Q 005034          175 AWIQEGGYETAGEGVVIGFIDTGIDPTHPSFADDASEHSYPVPSHFSGICEVTRDFPSGSCNRKLIGARHFAASAITRGI  254 (718)
Q Consensus       175 ~w~~~~~~~~~G~gv~VaVIDtGid~~Hp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~  254 (718)
                      +|..    +++|+||+|||||||||++||+|.++.                              ...++|.+.      
T Consensus        23 ~~~~----~~~G~gv~VaViDtGid~~Hpdl~~~~------------------------------~~~~d~~~~------   62 (278)
T 2b6n_A           23 NYHT----DYDGSGVTAFVIDTGVLNTHNEFGGRA------------------------------SSGYDFIDN------   62 (278)
T ss_dssp             EEEC----SCCCTTCEEEEEESCCCTTCGGGTTCE------------------------------EEEEETTTT------
T ss_pred             hccc----CCCCCCCEEEEEeCCCCCCChhHhccc------------------------------ccCeecCCC------
Confidence            6766    689999999999999999999998642                              223344332      


Q ss_pred             cCCCCCCCCCCCCCCCccccccccccCCCCCccccccccCccccccCCceEEEEeecccCCCCCHHHHHHHHHHHHH--C
Q 005034          255 FNSSQDYASPFDGDGHGSHTASVAAGNHGIPVVVTGHHFGNASGMAPRSHIAVYKALYKSFGGFAADVVAAIDQAAQ--D  332 (718)
Q Consensus       255 ~~~~~~~~~~~d~~gHGThVAGiiag~~~~~~~~~g~~~~~~~GvAp~A~i~~~kv~~~~~~~~~~~i~~ai~~a~~--~  332 (718)
                            ...+.|..+|||||||||+|..              .||||+|+|+.+|+++..+.+..++++++|+|+++  .
T Consensus        63 ------~~~~~d~~gHGT~vAgiia~~~--------------~GvAp~a~i~~~~v~~~~g~~~~~~~~~ai~~a~~~~~  122 (278)
T 2b6n_A           63 ------DYDATDCNGHGTHVAGTIGGST--------------YGVAKNVNVVGVRVLNCSGSGSNSGVIAGINWVKNNAS  122 (278)
T ss_dssp             ------BSCCCCSSSHHHHHHHHHHCTT--------------TCSSTTCEEEEEECSCTTSCCCHHHHHHHHHHHHHHCC
T ss_pred             ------CCCCCCCCCcHHHHHHHHHCCC--------------cCCCCCCeEEEEEEECCCCCccHHHHHHHHHHHHhCCC
Confidence                  1345688999999999999862              59999999999999988666889999999999998  5


Q ss_pred             CCCEEEEcCCCCCCCCCCCccccHHHHHHHHHHHCCCEEEEecCCCCCCCC-CCCCCCCceEEEeeeccCCceeeeEEeC
Q 005034          333 GVDIISLSITPNRRPPGIATFFNPIDMALLSAAKAGIFVVQAAGNTGPSPK-SMSSFSPWIFTVGAASHDRIYTNSIILG  411 (718)
Q Consensus       333 g~~ViN~S~G~~~~~~~~~~~~~~~~~a~~~a~~~GilvV~AAGN~g~~~~-~~~~~~~~vitVgA~~~~~~~~~~~~~~  411 (718)
                      +++|||||||...        ...++++++.+.++|++||+||||+|.... .+|+..+++|+|||++.+          
T Consensus       123 g~~Vin~S~G~~~--------~~~~~~ai~~a~~~gi~vV~AAGN~g~~~~~~~Pa~~~~vi~Vga~~~~----------  184 (278)
T 2b6n_A          123 GPAVANMSLGGGA--------SQATDDAVNAAVAAGITFVVAAGNDNSNACNYSPARAADAITVGSTTSN----------  184 (278)
T ss_dssp             SSEEEEECCCEEC--------CHHHHHHHHHHHHTTCEEEEECCSSSSBGGGEETTTCTTSEEEEEECTT----------
T ss_pred             CCeEEEECCCCCc--------CHHHHHHHHHHHHCCCEEEEEeCCCCCCCCCcCcccCCCeEEEEeeCCC----------
Confidence            8999999999753        367888999999999999999999998654 458889999999996432          


Q ss_pred             CCceEeeeccCCCCCceEEEEEcccccCCCCcccCCccccccCCCCCCccCCcCceEEEEEeecccccCcchHHHHHHHH
Q 005034          412 NSLTISGVGLAPGTDKMYTLISALHALNNNTTTTDDMYVGECQDSSNFNQDLVQGNLLICSYSIRFVLGLSTIKQAFETA  491 (718)
Q Consensus       412 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~g~i~~~~~~~~~~~~~~~~~~~~~~~  491 (718)
                                                                                                      
T Consensus       185 --------------------------------------------------------------------------------  184 (278)
T 2b6n_A          185 --------------------------------------------------------------------------------  184 (278)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             HhCCCcEEEEEeCCCccCcccCCCCCCCCeEEecCcchHHHHHHHHhccCCCccccceeeeeceeEEEecccccccCCCC
Q 005034          492 KNLSAAGIVFYMDPFVIGFQLNPTPMKMPGIIIPSPDDSKILLQYYNSSLERDEVTKKIIKFGAVACILGGLKANFSNSA  571 (718)
Q Consensus       492 ~~~ga~~vi~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  571 (718)
                                                                                                      
T Consensus       185 --------------------------------------------------------------------------------  184 (278)
T 2b6n_A          185 --------------------------------------------------------------------------------  184 (278)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             CceeccccCCCCCCCCCCCCCCCCCCceeccCCceeecccCCCCCCccccCccccccCchhhhhHHHHHHHHHHHHhCCC
Q 005034          572 PKIMYYSARGPDPEDSFLDDADIMKPNLVAPGNSIWAAWSSLGTDSVEFQGESFAMMSGTSMAAPHIAGLAALIKQKFPS  651 (718)
Q Consensus       572 ~~~a~fSs~Gpt~~~~~~~~~g~~KPDI~APG~~I~Sa~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~q~~p~  651 (718)
                      +.++.||++||..             ||+|||.+|++++..        .++.|..++|||||||||||++|||+|++|+
T Consensus       185 ~~~~~~S~~G~~~-------------di~ApG~~i~s~~~~--------~~~~~~~~sGTS~AaP~vaG~aAll~~~~p~  243 (278)
T 2b6n_A          185 DSRSSFSNYGTCL-------------DIYAPGSSITSSWYT--------SNSATNTISGTSMASPHVAGVAALYLDENPN  243 (278)
T ss_dssp             SBBCTTCCBSTTC-------------CEEEECSSEEEECTT--------STTCEEEECSHHHHHHHHHHHHHHHHHHCTT
T ss_pred             CCcCCcCCCCCCC-------------eEEeCCCCeECcccC--------CCCCEEEeCcHHHHHHHHHHHHHHHHHhCCC
Confidence            2357899999866             899999999998743        2357899999999999999999999999999


Q ss_pred             CCHHHHHHHHHhcccccc
Q 005034          652 FSPSAIASALSTSATLYD  669 (718)
Q Consensus       652 ls~~~ik~~L~~TA~~~~  669 (718)
                      |++.|||++|++||++..
T Consensus       244 lt~~~v~~~L~~tA~~~~  261 (278)
T 2b6n_A          244 LSPAQVTNLLKTRATADK  261 (278)
T ss_dssp             CCHHHHHHHHHHHSEESC
T ss_pred             CCHHHHHHHHHHhCccCC
Confidence            999999999999998653


No 28 
>1p8j_A Furin precursor; prohormone convertase, SPC1, PACE, P-domain; HET: DKA AR7 NAG FUL BMA MAN GAL FUC; 2.60A {Mus musculus} SCOP: b.18.1.20 c.41.1.1
Probab=100.00  E-value=6.8e-47  Score=422.54  Aligned_cols=296  Identities=19%  Similarity=0.215  Sum_probs=213.5

Q ss_pred             cCCCcccccccCCCCCCCCCcEEEEEccccCCCCCCCcCCCCCCCCCCCCCCCccccccCCCCCCCCCceeeeeeecchh
Q 005034          169 LGLPQGAWIQEGGYETAGEGVVIGFIDTGIDPTHPSFADDASEHSYPVPSHFSGICEVTRDFPSGSCNRKLIGARHFAAS  248 (718)
Q Consensus       169 ~~~~~~~w~~~~~~~~~G~gv~VaVIDtGid~~Hp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~  248 (718)
                      ++++. +|..    +++|+||+|||||||||++||+|.++..     .                       ...++|...
T Consensus        25 i~~~~-aw~~----g~~G~gv~VaViDtGvd~~Hpdl~~~~~-----~-----------------------~~~~d~~~~   71 (471)
T 1p8j_A           25 LNVKE-AWAQ----GFTGHGIVVSILDDGIEKNHPDLAGNYD-----P-----------------------GASFDVNDQ   71 (471)
T ss_dssp             CCCHH-HHHT----TCSCTTCEEEEEEBCCCTTCTTTGGGBC-----G-----------------------GGCEETTTT
T ss_pred             CChHH-HHhc----CCCCCCCEEEEEeCCcCCCChhHhhccC-----c-----------------------cCcccccCC
Confidence            44434 7776    7899999999999999999999997643     0                       011222221


Q ss_pred             hhhcCccCCCCCCCCCCCCCCCccccccccccCCCCCccccccccCccccccCCceEEEEeecccCCCCCHHHHHHHHHH
Q 005034          249 AITRGIFNSSQDYASPFDGDGHGSHTASVAAGNHGIPVVVTGHHFGNASGMAPRSHIAVYKALYKSFGGFAADVVAAIDQ  328 (718)
Q Consensus       249 ~~~~~~~~~~~~~~~~~d~~gHGThVAGiiag~~~~~~~~~g~~~~~~~GvAp~A~i~~~kv~~~~~~~~~~~i~~ai~~  328 (718)
                      .      ....+...+.|.++|||||||||+|..+++        .++.||||+|+|+.+|+++.    ..+++++|++|
T Consensus        72 ~------~~p~~~~~~~d~~gHGT~vAGiiaa~~~n~--------~g~~GvAp~a~i~~~rv~~g----~~~~~~~ai~~  133 (471)
T 1p8j_A           72 D------PDPQPRYTQMNDNRHGTRCAGEVAAVANNG--------VCGVGVAYNARIGGVRMLDG----EVTDAVEARSL  133 (471)
T ss_dssp             B------SCCCCCCCTTCTTCHHHHHHHHHHCCSSSS--------SSCCCTTTTSEEEEEECSSS----CCCHHHHHHHH
T ss_pred             C------CCCCCccCCCCCCCcHHHHHHHHHeeccCC--------CCCEEECCCCeEEEEEccCC----chhHHHHHHHh
Confidence            0      000111234678899999999999975443        24589999999999999863    35689999999


Q ss_pred             HHH-CCCCEEEEcCCCCCCCCCCCccccHHHHHHHHHH-----HCCCEEEEecCCCCCCCCC----CCCCCCceEEEeee
Q 005034          329 AAQ-DGVDIISLSITPNRRPPGIATFFNPIDMALLSAA-----KAGIFVVQAAGNTGPSPKS----MSSFSPWIFTVGAA  398 (718)
Q Consensus       329 a~~-~g~~ViN~S~G~~~~~~~~~~~~~~~~~a~~~a~-----~~GilvV~AAGN~g~~~~~----~~~~~~~vitVgA~  398 (718)
                      +++ ++++|||||||..............+.+++..+.     .+|++||+||||+|.....    .++.++++|+|||+
T Consensus       134 a~~~~~~~Vin~S~G~~~~~~~~~~~~~~~~~a~~~a~~~~~~~~GvlvV~AAGN~g~~~~~~~~~~~~~~~~vItVgA~  213 (471)
T 1p8j_A          134 GLNPNHIHIYSASWGPEDDGKTVDGPARLAEEAFFRGVSQGRGGLGSIFVWASGNGGREHDSCNCDGYTNSIYTLSISSA  213 (471)
T ss_dssp             TSCTTTCCEEEECCBSCCSSSCCBCCCHHHHHHHHHHHHHHHHHTCCEEEEECCSCGGGTCBGGGBTTTTSTTEEEEEEE
T ss_pred             hhccCCCeEEEeccCcCCCCCcccCcHHHHHHHHHHHHHhhccCCCeEEEEeCCCCCCCCCCcCcCcccCCCceEEEecc
Confidence            999 8999999999975432111112234455555544     3799999999999975321    22345889999986


Q ss_pred             ccCCceeeeEEeCCCceEeeeccCCCCCceEEEEEcccccCCCCcccCCccccccCCCCCCccCCcCceEEEEEeecccc
Q 005034          399 SHDRIYTNSIILGNSLTISGVGLAPGTDKMYTLISALHALNNNTTTTDDMYVGECQDSSNFNQDLVQGNLLICSYSIRFV  478 (718)
Q Consensus       399 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~g~i~~~~~~~~~~  478 (718)
                      +.+                                                                             
T Consensus       214 ~~~-----------------------------------------------------------------------------  216 (471)
T 1p8j_A          214 TQF-----------------------------------------------------------------------------  216 (471)
T ss_dssp             CTT-----------------------------------------------------------------------------
T ss_pred             cCC-----------------------------------------------------------------------------
Confidence            532                                                                             


Q ss_pred             cCcchHHHHHHHHHhCCCcEEEEEeCCCccCcccCCCCCCCCeEEecCcchHHHHHHHHhccCCCccccceeeeeceeEE
Q 005034          479 LGLSTIKQAFETAKNLSAAGIVFYMDPFVIGFQLNPTPMKMPGIIIPSPDDSKILLQYYNSSLERDEVTKKIIKFGAVAC  558 (718)
Q Consensus       479 ~~~~~~~~~~~~~~~~ga~~vi~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~  558 (718)
                                                                                                      
T Consensus       217 --------------------------------------------------------------------------------  216 (471)
T 1p8j_A          217 --------------------------------------------------------------------------------  216 (471)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             EecccccccCCCCCceeccccCCCCCCCCCCCCCCCCCCceeccCCceeecccCCCCCCccccCccccccCchhhhhHHH
Q 005034          559 ILGGLKANFSNSAPKIMYYSARGPDPEDSFLDDADIMKPNLVAPGNSIWAAWSSLGTDSVEFQGESFAMMSGTSMAAPHI  638 (718)
Q Consensus       559 ~~~~~~~~~~~~~~~~a~fSs~Gpt~~~~~~~~~g~~KPDI~APG~~I~Sa~~~~~~~~~~~~~~~y~~~sGTSmAaP~V  638 (718)
                                   +.++.||++||...       ...+|...+||..|+++..         .++.|..++|||||||||
T Consensus       217 -------------g~~a~~S~~g~~~~-------~~~~~~~~~~g~~i~st~~---------~~~~~~~~sGTS~AaP~V  267 (471)
T 1p8j_A          217 -------------GNVPWYSEACSSTL-------ATTYSSGNQNEKQIVTTDL---------RQKCTESHTGTSASAPLA  267 (471)
T ss_dssp             -------------SCCCTTCCBCTTCC-------EEEECCCSTTSCCEEEEET---------TTEEEEEECSHHHHHHHH
T ss_pred             -------------CCcccccCCCCcce-------EEeCCCCCCCCCCEEEeeC---------CCCccccCCCcccccchh
Confidence                         23678999999875       2445555666779999873         234789999999999999


Q ss_pred             HHHHHHHHHhCCCCCHHHHHHHHHhcccccccCCCccccccccCCCCCCCCCCCCCccccccccccccCCC
Q 005034          639 AGLAALIKQKFPSFSPSAIASALSTSATLYDKNGGPIMAQRAYAKPDENQSPATPFDMGSGFVNATASLDP  709 (718)
Q Consensus       639 AG~aALl~q~~p~ls~~~ik~~L~~TA~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~G~vn~~~Al~~  709 (718)
                      ||++|||+|++|+|++.+||++|++||++++........+        ......+..||||+||+.+||+.
T Consensus       268 AG~aALl~~~~p~lt~~~v~~~L~~tA~~~~~~~~~~~~n--------~~g~~~~~~~G~G~vda~~Av~~  330 (471)
T 1p8j_A          268 AGIIALTLEANKNLTWRDMQHLVVQTSKPAHLNADDWATN--------GVGRKVSHSYGYGLLDAGAMVAL  330 (471)
T ss_dssp             HHHHHHHHHHCTTCCHHHHHHHHHHHCBCTTCCCSCCEEC--------TTSCEEBTTTBTCBCCHHHHHHH
T ss_pred             hhHHHHHHhhCCCCCHHHHHHHHHhcCccCCCCCCCceec--------CCCcccCCCCCCEEEcHhHHHHH
Confidence            9999999999999999999999999999876532210000        01112357899999999999863


No 29 
>2id4_A Kexin; KEX2, kexin, furin, proprotein, prohormone, convertase, SUBT like protease, serine protease; HET: NDG; 1.90A {Saccharomyces cerevisiae} SCOP: b.18.1.20 c.41.1.1 PDB: 1r64_A* 1ot5_A*
Probab=100.00  E-value=3.6e-46  Score=419.33  Aligned_cols=284  Identities=22%  Similarity=0.242  Sum_probs=212.2

Q ss_pred             cccccCCCCCCCCCcEEEEEccccCCCCCCCcCCCCCCCCCCCCCCCccccccCCCCCCCCCceeeeeeecchhhhhcCc
Q 005034          175 AWIQEGGYETAGEGVVIGFIDTGIDPTHPSFADDASEHSYPVPSHFSGICEVTRDFPSGSCNRKLIGARHFAASAITRGI  254 (718)
Q Consensus       175 ~w~~~~~~~~~G~gv~VaVIDtGid~~Hp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~  254 (718)
                      +|..    +++|+||+|||||||||++||+|.++...                            .+.++|...      
T Consensus        46 aw~~----g~tG~gv~VaViDtGvd~~Hpdl~~~~~~----------------------------~~~~d~~~~------   87 (503)
T 2id4_A           46 LWYN----NITGAGVVAAIVDDGLDYENEDLKDNFCA----------------------------EGSWDFNDN------   87 (503)
T ss_dssp             HHHT----TCSCTTCEEEEEESCCCTTSTTTTTTBCG----------------------------GGCEETTTT------
T ss_pred             HHhc----CCCCCCeEEEEEeCCCCCCChhHhhcccc----------------------------cCcccCCCC------
Confidence            6776    79999999999999999999999986440                            012233322      


Q ss_pred             cCCCCCCCCCCCCCCCccccccccccCCCCCccccccccCccccccCCceEEEEeecccCCCCCHHHHHHHHHHHHHCCC
Q 005034          255 FNSSQDYASPFDGDGHGSHTASVAAGNHGIPVVVTGHHFGNASGMAPRSHIAVYKALYKSFGGFAADVVAAIDQAAQDGV  334 (718)
Q Consensus       255 ~~~~~~~~~~~d~~gHGThVAGiiag~~~~~~~~~g~~~~~~~GvAp~A~i~~~kv~~~~~~~~~~~i~~ai~~a~~~g~  334 (718)
                         ..+.....|.++|||||||||+|..+++        .++.||||+|+|+.+|+++.  .+...+++++|+|+++++ 
T Consensus        88 ---~~~~~p~~d~~gHGT~vAGiiaa~~~n~--------~~~~GvAp~a~i~~~rv~~~--~~~~~~~~~ai~~a~~~~-  153 (503)
T 2id4_A           88 ---TNLPKPRLSDDYHGTRCAGEIAAKKGNN--------FCGVGVGYNAKISGIRILSG--DITTEDEAASLIYGLDVN-  153 (503)
T ss_dssp             ---BSCCCCCSTTTTHHHHHHHHHHCCSSSS--------SSCCCTTTTSEEEEEECTTS--CCCHHHHHHHTTTTTTTC-
T ss_pred             ---CCCCCCCCCCCChHHHHHHHHHhccCCC--------CCcEEECCCCEEEEEEeeCC--CCChHHHHHHHHhHhhcC-
Confidence               0011223578899999999999976433        24579999999999999974  367889999999999988 


Q ss_pred             CEEEEcCCCCCCCCCCCccccHHHHHHHHHH-----HCCCEEEEecCCCCCCCC--CCCC--CCCceEEEeeeccCCcee
Q 005034          335 DIISLSITPNRRPPGIATFFNPIDMALLSAA-----KAGIFVVQAAGNTGPSPK--SMSS--FSPWIFTVGAASHDRIYT  405 (718)
Q Consensus       335 ~ViN~S~G~~~~~~~~~~~~~~~~~a~~~a~-----~~GilvV~AAGN~g~~~~--~~~~--~~~~vitVgA~~~~~~~~  405 (718)
                      +|||||||..............+.+++..+.     .+|++||+||||+|....  .++.  .++++|+|||++.+    
T Consensus       154 ~Iin~S~G~~~~~~~~~~~~~~~~~a~~~a~~~~r~~~GvlvV~AAGN~g~~~~~~~~~~~~~~~~vI~VgA~~~~----  229 (503)
T 2id4_A          154 DIYSCSWGPADDGRHLQGPSDLVKKALVKGVTEGRDSKGAIYVFASGNGGTRGDNCNYDGYTNSIYSITIGAIDHK----  229 (503)
T ss_dssp             SEEEECEESCCSSSCCBCCCHHHHHHHHHHHHHHHHHTCCEEEEECCSCGGGTCCGGGBTTTTCTTEEEEEEECTT----
T ss_pred             CEEEeCCCcCCCCccccCchHHHHHHHHHHHHhcccCCCcEEEEecCCCCCcCCCCCCCcccCCCCEEEEEeeCCC----
Confidence            9999999976432111222345666666665     479999999999997532  2332  46789999986432    


Q ss_pred             eeEEeCCCceEeeeccCCCCCceEEEEEcccccCCCCcccCCccccccCCCCCCccCCcCceEEEEEeecccccCcchHH
Q 005034          406 NSIILGNSLTISGVGLAPGTDKMYTLISALHALNNNTTTTDDMYVGECQDSSNFNQDLVQGNLLICSYSIRFVLGLSTIK  485 (718)
Q Consensus       406 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~g~i~~~~~~~~~~~~~~~~~  485 (718)
                                                                                                      
T Consensus       230 --------------------------------------------------------------------------------  229 (503)
T 2id4_A          230 --------------------------------------------------------------------------------  229 (503)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             HHHHHHHhCCCcEEEEEeCCCccCcccCCCCCCCCeEEecCcchHHHHHHHHhccCCCccccceeeeeceeEEEeccccc
Q 005034          486 QAFETAKNLSAAGIVFYMDPFVIGFQLNPTPMKMPGIIIPSPDDSKILLQYYNSSLERDEVTKKIIKFGAVACILGGLKA  565 (718)
Q Consensus       486 ~~~~~~~~~ga~~vi~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  565 (718)
                                                                                                      
T Consensus       230 --------------------------------------------------------------------------------  229 (503)
T 2id4_A          230 --------------------------------------------------------------------------------  229 (503)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             ccCCCCCceeccccCCCCCCCCCCCCCCCCCCceec----cCCceeecccCCCCCCccccCccccccCchhhhhHHHHHH
Q 005034          566 NFSNSAPKIMYYSARGPDPEDSFLDDADIMKPNLVA----PGNSIWAAWSSLGTDSVEFQGESFAMMSGTSMAAPHIAGL  641 (718)
Q Consensus       566 ~~~~~~~~~a~fSs~Gpt~~~~~~~~~g~~KPDI~A----PG~~I~Sa~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~  641 (718)
                            +.++.||++||..             |++|    ||..|+++..         .++.|..++|||||||||||+
T Consensus       230 ------~~~a~~S~~g~~~-------------~~~a~~~gpG~~I~st~~---------~~~~~~~~sGTS~AaP~VAG~  281 (503)
T 2id4_A          230 ------DLHPPYSEGCSAV-------------MAVTYSSGSGEYIHSSDI---------NGRCSNSHGGTSAAAPLAAGV  281 (503)
T ss_dssp             ------SCCCTTCCCCTTE-------------EEEEECSBTTBCEEEECS---------TTCEEEEECSHHHHHHHHHHH
T ss_pred             ------CCcCCcCCCCCcc-------------eEeecCCCCCCceEeecC---------CCCceecCCCccccchhhhHH
Confidence                  2357899999987             7777    8999999842         355799999999999999999


Q ss_pred             HHHHHHhCCCCCHHHHHHHHHhcccccccCCCccccccccCCCCCCCCCCCCCccccccccccccCCC
Q 005034          642 AALIKQKFPSFSPSAIASALSTSATLYDKNGGPIMAQRAYAKPDENQSPATPFDMGSGFVNATASLDP  709 (718)
Q Consensus       642 aALl~q~~p~ls~~~ik~~L~~TA~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~G~vn~~~Al~~  709 (718)
                      +|||+|++|+|++.|||.+|+.||++++....+-...       .......+..||||+||+.+||+.
T Consensus       282 aALl~~~~p~lt~~~v~~~L~~tA~~~~~~~~~~~~~-------~~~g~~~~~~~G~G~vda~~Av~~  342 (503)
T 2id4_A          282 YTLLLEANPNLTWRDVQYLSILSAVGLEKNADGDWRD-------SAMGKKYSHRYGFGKIDAHKLIEM  342 (503)
T ss_dssp             HHHHHHHCTTCCHHHHHHHHHHHCBCCTTCGGGCCEE-------CSSSSEEBTTTBTCBCCHHHHHHH
T ss_pred             HHHHHHhCCCCCHHHHHHHHHhccccCCCCcCCCcee-------cCCCCccCcccCCcEecHHHHHHH
Confidence            9999999999999999999999999876431100000       001112356899999999999863


No 30 
>2qtw_B Proprotein convertase subtilisin/kexin type 9; coronary heart disease, hypercholest low density lipoprotein receptor, autocatalytic cleavage; HET: NAG; 1.90A {Homo sapiens} PDB: 3m0c_B 3bps_A 3gcw_A 3gcx_A 3p5b_A 3p5c_A 2pmw_B 3h42_B 2w2n_A 2w2m_A 2w2p_A 2w2q_A 2xtj_A 2w2o_A
Probab=100.00  E-value=4.3e-46  Score=411.44  Aligned_cols=284  Identities=21%  Similarity=0.242  Sum_probs=206.5

Q ss_pred             CCCCCCcEEEEEccccCCCCCCCcCCCCCCCCCCCCCCCccccccCCCCCCCCCceeeeeeecchhhhhcCccCCCCCCC
Q 005034          183 ETAGEGVVIGFIDTGIDPTHPSFADDASEHSYPVPSHFSGICEVTRDFPSGSCNRKLIGARHFAASAITRGIFNSSQDYA  262 (718)
Q Consensus       183 ~~~G~gv~VaVIDtGid~~Hp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~  262 (718)
                      +++|+||+|+|||||||++||+|.++..                             ...+++...      .+......
T Consensus        22 ~~tG~GV~VaVIDTGId~~HpdL~gr~~-----------------------------~~~~~~v~~------~dg~~f~~   66 (546)
T 2qtw_B           22 PDGGSLVEVYLLDTSIQSDHREIEGRVM-----------------------------VTDFENVPE------EDGTRFHR   66 (546)
T ss_dssp             --CCTTSEEEEEESCCCTTSTTTTTTEE-----------------------------EEEEECCCC------CC------
T ss_pred             CCCCCCcEEEEECCCCCCCChHHccccc-----------------------------ccCcccccC------CCCccccC
Confidence            6899999999999999999999997543                             000000000      00000002


Q ss_pred             CCCCCCCCccccccccccCCCCCccccccccCccccccCCceEEEEeecccCCCCCHHHHHHHHHHHHHC------CCCE
Q 005034          263 SPFDGDGHGSHTASVAAGNHGIPVVVTGHHFGNASGMAPRSHIAVYKALYKSFGGFAADVVAAIDQAAQD------GVDI  336 (718)
Q Consensus       263 ~~~d~~gHGThVAGiiag~~~~~~~~~g~~~~~~~GvAp~A~i~~~kv~~~~~~~~~~~i~~ai~~a~~~------g~~V  336 (718)
                      .+.|..||||||||||+|..              .||||+|+|+.+|+++.++.++.++++++|+|+++.      +++|
T Consensus        67 ~~~D~~GHGThVAGIIag~~--------------~GVAP~A~L~~vkVl~~~G~g~~s~ii~ai~~a~~~~~~~~~g~~V  132 (546)
T 2qtw_B           67 QASKCDSHGTHLAGVVSGRD--------------AGVAKGASMRSLRVLNCQGKGTVSGTLIGLEFIRKSQLVQPVGPLV  132 (546)
T ss_dssp             -CTTTTHHHHHHHHHHHCTT--------------TCSSTTCEEEEEECSCTTSEEEHHHHHHHHHHHHHHHHHSCCSCEE
T ss_pred             CCCCCCChHHHHHHHHhccC--------------CCcCCCCEEEEEEEECCCCCcCHHHHHHHHHHHHHhhhhccCCCeE
Confidence            34578999999999999873              599999999999999876668899999999999984      8999


Q ss_pred             EEEcCCCCCCCCCCCccccHHHHHHHHHHHCCCEEEEecCCCCCCC-CCCCCCCCceEEEeeeccCCceeeeEEeCCCce
Q 005034          337 ISLSITPNRRPPGIATFFNPIDMALLSAAKAGIFVVQAAGNTGPSP-KSMSSFSPWIFTVGAASHDRIYTNSIILGNSLT  415 (718)
Q Consensus       337 iN~S~G~~~~~~~~~~~~~~~~~a~~~a~~~GilvV~AAGN~g~~~-~~~~~~~~~vitVgA~~~~~~~~~~~~~~~~~~  415 (718)
                      ||||||+.        +...++++++.+.++|++||+||||+|.+. ..+|+..+++|+|||++.++....         
T Consensus       133 INmSlGg~--------~s~~l~~Ai~~A~~~GvlvVaAAGN~g~d~~~~sPAs~~~VItVGA~d~~g~~a~---------  195 (546)
T 2qtw_B          133 VLLPLAGG--------YSRVLNAACQRLARAGVVLVTAAGNFRDDACLYSPASAPEVITVGATNAQDQPVT---------  195 (546)
T ss_dssp             EEECEEEE--------CCHHHHHHHHHHHHTTCEEEEECCSBSSBGGGEETTTCTTSEEEEEECTTSCBCE---------
T ss_pred             EEecCCCC--------CcHHHHHHHHHHHhCCCEEEEECCCCCCCCCccCcccCCCEEEEEEecCCCCccc---------
Confidence            99999964        246889999999999999999999999865 345888999999999764321000         


Q ss_pred             EeeeccCCCCCceEEEEEcccccCCCCcccCCccccccCCCCCCccCCcCceEEEEEeecccccCcchHHHHHHHHHhCC
Q 005034          416 ISGVGLAPGTDKMYTLISALHALNNNTTTTDDMYVGECQDSSNFNQDLVQGNLLICSYSIRFVLGLSTIKQAFETAKNLS  495 (718)
Q Consensus       416 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~g~i~~~~~~~~~~~~~~~~~~~~~~~~~~g  495 (718)
                                                                                                      
T Consensus       196 --------------------------------------------------------------------------------  195 (546)
T 2qtw_B          196 --------------------------------------------------------------------------------  195 (546)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             CcEEEEEeCCCccCcccCCCCCCCCeEEecCcchHHHHHHHHhccCCCccccceeeeeceeEEEecccccccCCCCCcee
Q 005034          496 AAGIVFYMDPFVIGFQLNPTPMKMPGIIIPSPDDSKILLQYYNSSLERDEVTKKIIKFGAVACILGGLKANFSNSAPKIM  575 (718)
Q Consensus       496 a~~vi~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a  575 (718)
                                                                                                   .-.
T Consensus       196 -----------------------------------------------------------------------------~s~  198 (546)
T 2qtw_B          196 -----------------------------------------------------------------------------LGT  198 (546)
T ss_dssp             -----------------------------------------------------------------------------ETT
T ss_pred             -----------------------------------------------------------------------------ccC
Confidence                                                                                         001


Q ss_pred             ccccCCCCCCCCCCCCCCCCCCceeccCCceeecccCCCCCCccccCccccccCchhhhhHHHHHHHHHHHHhCCCCCHH
Q 005034          576 YYSARGPDPEDSFLDDADIMKPNLVAPGNSIWAAWSSLGTDSVEFQGESFAMMSGTSMAAPHIAGLAALIKQKFPSFSPS  655 (718)
Q Consensus       576 ~fSs~Gpt~~~~~~~~~g~~KPDI~APG~~I~Sa~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~q~~p~ls~~  655 (718)
                      .||++||.+             ||+|||.+|+++++..        ++.|..++|||||||||||++|||+|++|++++.
T Consensus       199 ~fSn~G~~v-------------DI~APG~~I~St~~~~--------~~~y~~~SGTSmAAP~VAG~aALlls~~P~ltp~  257 (546)
T 2qtw_B          199 LGTNFGRCV-------------DLFAPGEDIIGASSDC--------STCFVSQSGTSQAAAHVAGIAAMMLSAEPELTLA  257 (546)
T ss_dssp             EECCBSTTC-------------CEEEECSSEEEECTTS--------TTCEEEECSHHHHHHHHHHHHHHHHHHSTTCCHH
T ss_pred             CcCCCCCcc-------------eEEecCccEEeeccCC--------CCcEeeeCcCcHHHHHHHHHHHHHHHHCCCCCHH
Confidence            278898755             9999999999998532        2478999999999999999999999999999999


Q ss_pred             HHHHHHHhcccccccCCCccccccccCCCCC-CCCCCCCCcccccc--ccccccCCCC
Q 005034          656 AIASALSTSATLYDKNGGPIMAQRAYAKPDE-NQSPATPFDMGSGF--VNATASLDPG  710 (718)
Q Consensus       656 ~ik~~L~~TA~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~G~G~--vn~~~Al~~~  710 (718)
                      |||++|++||.+.......++.......|.. ...+..+..+|+|+  .++..+....
T Consensus       258 qVr~~L~~tAt~~~i~~~~~p~~~~~~tpN~l~~~~~~~~~~G~~l~~~~~w~a~s~~  315 (546)
T 2qtw_B          258 ELRQRLIHFSAKDVINEAWFPEDQRVLTPNLVAALPPSTHGAGWQLFCRTVWSAHSGP  315 (546)
T ss_dssp             HHHHHHHHTSEESCSCGGGSCHHHHTTSCCEECCCCCTTCC--CCCEEEEEECCCCCS
T ss_pred             HHHHHHHHhccccccCCccCccccCCCCccchhccCCcccccCCCcchhchhccCCCC
Confidence            9999999999764322211110000001110 01112456789999  8888887543


No 31 
>3f7m_A Alkaline serine protease VER112; verticillium psalliotae, cuticle- degrading protease, nematodes, hydrolase, secreted, zymogen; 1.60A {Lecanicillium psalliotae} SCOP: c.41.1.1 PDB: 3f7o_A
Probab=100.00  E-value=7e-46  Score=386.81  Aligned_cols=227  Identities=32%  Similarity=0.464  Sum_probs=194.6

Q ss_pred             CCCCCcEEEEEccccCCCCCCCcCCCCCCCCCCCCCCCccccccCCCCCCCCCceeeeeeecchhhhhcCccCCCCCCCC
Q 005034          184 TAGEGVVIGFIDTGIDPTHPSFADDASEHSYPVPSHFSGICEVTRDFPSGSCNRKLIGARHFAASAITRGIFNSSQDYAS  263 (718)
Q Consensus       184 ~~G~gv~VaVIDtGid~~Hp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~  263 (718)
                      .+|+||+|||||||||++||+|.++..                              ...+|..               .
T Consensus        29 ~~G~gv~VaViDtGvd~~h~~l~~~~~------------------------------~~~~~~~---------------~   63 (279)
T 3f7m_A           29 SAGAGACVYVIDTGVEDTHPDFEGRAK------------------------------QIKSYAS---------------T   63 (279)
T ss_dssp             TTTTTEEEEEEESCCCTTCGGGTTCEE------------------------------EEEECSS---------------S
T ss_pred             CCCCCCEEEEEcCCCCCCChhhccccc------------------------------cccCCCC---------------C
Confidence            599999999999999999999986432                              2233322               1


Q ss_pred             CCCCCCCccccccccccCCCCCccccccccCccccccCCceEEEEeecccCCCCCHHHHHHHHHHHHHCC-------CCE
Q 005034          264 PFDGDGHGSHTASVAAGNHGIPVVVTGHHFGNASGMAPRSHIAVYKALYKSFGGFAADVVAAIDQAAQDG-------VDI  336 (718)
Q Consensus       264 ~~d~~gHGThVAGiiag~~~~~~~~~g~~~~~~~GvAp~A~i~~~kv~~~~~~~~~~~i~~ai~~a~~~g-------~~V  336 (718)
                      ..|.+||||||||||+|+.              .||||+|+|+.+|+++..+.+...+++++|+|+++++       ++|
T Consensus        64 ~~d~~gHGT~vAgii~~~~--------------~GvAp~a~l~~~~v~~~~~~~~~~~~~~ai~~~~~~~~~~~~~~~~V  129 (279)
T 3f7m_A           64 ARDGHGHGTHCAGTIGSKT--------------WGVAKKVSIFGVKVLDDSGSGSLSNIIAGMDFVASDRQSRNCPRRTV  129 (279)
T ss_dssp             SSCSSSHHHHHHHHHHCTT--------------TCSSTTCEEEEEECSCTTSCCCHHHHHHHHHHHHHHGGGSCCTTEEE
T ss_pred             CCCCCCcHHHHHHHHhcCc--------------cccCCCCEEEEEEeeCCCCCcCHHHHHHHHHHHHhccccccCCCCeE
Confidence            1278899999999999762              5999999999999998867789999999999999876       899


Q ss_pred             EEEcCCCCCCCCCCCccccHHHHHHHHHHHCCCEEEEecCCCCCCCCC-CCCCCCceEEEeeeccCCceeeeEEeCCCce
Q 005034          337 ISLSITPNRRPPGIATFFNPIDMALLSAAKAGIFVVQAAGNTGPSPKS-MSSFSPWIFTVGAASHDRIYTNSIILGNSLT  415 (718)
Q Consensus       337 iN~S~G~~~~~~~~~~~~~~~~~a~~~a~~~GilvV~AAGN~g~~~~~-~~~~~~~vitVgA~~~~~~~~~~~~~~~~~~  415 (718)
                      ||||||..        +...++++++.+.++|++||+||||+|..... +|+..+++|+|||++.+              
T Consensus       130 in~S~g~~--------~~~~~~~a~~~a~~~gv~vV~AAGN~g~~~~~~~Pa~~~~vi~Vga~~~~--------------  187 (279)
T 3f7m_A          130 ASMSLGGG--------YSAALNQAAARLQSSGVFVAVAAGNDNRDAANTSPASEPTVCTVGATDSN--------------  187 (279)
T ss_dssp             EEECCCEE--------CCHHHHHHHHHHHHTTCEEEEECCSSSSBGGGEETTTCTTSEEEEEECTT--------------
T ss_pred             EEeCCCcC--------ccHHHHHHHHHHHHCCCEEEEEcCCCCCCCCCcCCCCCCCEEEEeecCCC--------------
Confidence            99999964        34788999999999999999999999986543 47889999999996432              


Q ss_pred             EeeeccCCCCCceEEEEEcccccCCCCcccCCccccccCCCCCCccCCcCceEEEEEeecccccCcchHHHHHHHHHhCC
Q 005034          416 ISGVGLAPGTDKMYTLISALHALNNNTTTTDDMYVGECQDSSNFNQDLVQGNLLICSYSIRFVLGLSTIKQAFETAKNLS  495 (718)
Q Consensus       416 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~g~i~~~~~~~~~~~~~~~~~~~~~~~~~~g  495 (718)
                                                                                                      
T Consensus       188 --------------------------------------------------------------------------------  187 (279)
T 3f7m_A          188 --------------------------------------------------------------------------------  187 (279)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             CcEEEEEeCCCccCcccCCCCCCCCeEEecCcchHHHHHHHHhccCCCccccceeeeeceeEEEecccccccCCCCCcee
Q 005034          496 AAGIVFYMDPFVIGFQLNPTPMKMPGIIIPSPDDSKILLQYYNSSLERDEVTKKIIKFGAVACILGGLKANFSNSAPKIM  575 (718)
Q Consensus       496 a~~vi~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a  575 (718)
                                                                                                  +.++
T Consensus       188 ----------------------------------------------------------------------------~~~~  191 (279)
T 3f7m_A          188 ----------------------------------------------------------------------------DVRS  191 (279)
T ss_dssp             ----------------------------------------------------------------------------SBBC
T ss_pred             ----------------------------------------------------------------------------CCCC
Confidence                                                                                        2367


Q ss_pred             ccccCCCCCCCCCCCCCCCCCCceeccCCceeecccCCCCCCccccCccccccCchhhhhHHHHHHHHHHHHhCCCCCHH
Q 005034          576 YYSARGPDPEDSFLDDADIMKPNLVAPGNSIWAAWSSLGTDSVEFQGESFAMMSGTSMAAPHIAGLAALIKQKFPSFSPS  655 (718)
Q Consensus       576 ~fSs~Gpt~~~~~~~~~g~~KPDI~APG~~I~Sa~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~q~~p~ls~~  655 (718)
                      .||++||..             ||+|||.+|+++.          .++.|..++|||||||+|||++|||+|++|. +++
T Consensus       192 ~~S~~g~~~-------------di~ApG~~i~s~~----------~~~~~~~~sGTS~AaP~vaG~aAll~~~~p~-t~~  247 (279)
T 3f7m_A          192 TFSNYGRVV-------------DIFAPGTSITSTW----------IGGRTNTISGTSMATPHIAGLAAYLFGLEGG-SAG  247 (279)
T ss_dssp             TTCCBSTTC-------------CEEEECSSEEEEC----------GGGCEEEECSHHHHHHHHHHHHHHHHHHTCC-CTT
T ss_pred             CCCCCCCCC-------------eEEECCCCeEeec----------CCCCEEEeeEHHHHHHHHHHHHHHHHHhCCC-CHH
Confidence            899999976             8999999999998          5668999999999999999999999999999 999


Q ss_pred             HHHHHHHhcccccccC
Q 005034          656 AIASALSTSATLYDKN  671 (718)
Q Consensus       656 ~ik~~L~~TA~~~~~~  671 (718)
                      +||++|++||++....
T Consensus       248 ~v~~~L~~tA~~~~~~  263 (279)
T 3f7m_A          248 AMCGRIQTLSTKNVLT  263 (279)
T ss_dssp             THHHHHHHHSEESCCB
T ss_pred             HHHHHHHHhccccccc
Confidence            9999999999875443


No 32 
>2oxa_A Extracellular serine protease; kexin, hydrolase; 1.65A {Aeromonas sobria} PDB: 3hjr_A
Probab=100.00  E-value=2.1e-45  Score=422.44  Aligned_cols=322  Identities=20%  Similarity=0.224  Sum_probs=200.2

Q ss_pred             cccccCCCCCCCCCcEEEEEccccCCCCCCCcCCCCCCCCCCCCCCCccccccCCCCCCCCCceeeeeeecchhhhhcCc
Q 005034          175 AWIQEGGYETAGEGVVIGFIDTGIDPTHPSFADDASEHSYPVPSHFSGICEVTRDFPSGSCNRKLIGARHFAASAITRGI  254 (718)
Q Consensus       175 ~w~~~~~~~~~G~gv~VaVIDtGid~~Hp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~  254 (718)
                      +|..    +++|+||+|||||||||++||+|.++...                             +.++|..+      
T Consensus        62 aw~~----g~~G~gV~VaViDtGid~~Hpdl~~~~~~-----------------------------~~~~~~~~------  102 (600)
T 2oxa_A           62 AHRT----GVLGHGVNVAVVDDGLAIAHPDLADNVRP-----------------------------GSKNVVTG------  102 (600)
T ss_dssp             HHHT----TCSCTTCEEEEESSCCCTTCTTTGGGBCS-----------------------------CCBCTTTC------
T ss_pred             HHhc----CCCCCCcEEEEecCCcCCCCcchhhcccc-----------------------------CceeccCC------
Confidence            6665    79999999999999999999999976440                             11122211      


Q ss_pred             cCCCCCCCCCCC-CCCCccccccccccCCCCCccccccccCccccccCCceEEEEeecccCCCCCH-HHHHHHHHHHHHC
Q 005034          255 FNSSQDYASPFD-GDGHGSHTASVAAGNHGIPVVVTGHHFGNASGMAPRSHIAVYKALYKSFGGFA-ADVVAAIDQAAQD  332 (718)
Q Consensus       255 ~~~~~~~~~~~d-~~gHGThVAGiiag~~~~~~~~~g~~~~~~~GvAp~A~i~~~kv~~~~~~~~~-~~i~~ai~~a~~~  332 (718)
                         . ....|.| .+||||||||||+|. +++        .++.||||+|+|+.+|+++....... ..+++....+..+
T Consensus       103 ---~-~d~~p~d~~~gHGT~vAGiiaa~-~n~--------~g~~GVAp~A~l~~vkv~~~~~~~~~~~~~~~~~~~a~~~  169 (600)
T 2oxa_A          103 ---S-DDPTPTDPDTGHGTSVSGIIAAV-DNA--------IGTKGIAPRAQLQGFNLLDDNSQQLQKDWLYALGDSNASR  169 (600)
T ss_dssp             ---S-SCCCCCSTTCCHHHHHHHHHHCC-SSS--------SSCCCSSTTCEEEEECTTSTTCCCCHHHHHHHTTTSHHHH
T ss_pred             ---C-CCCCCCCCCCCCccHHHHHhhcc-cCC--------CcceEEccCCceEEEeeecCcccchHHHHHHHHhhhhccc
Confidence               0 1122334 789999999999998 332        24689999999999999987444432 3344443447778


Q ss_pred             CCCEEEEcCCCCCCCC-CCCccccHHHHHH-HH--HHHCCCEEEEecCCCCCCCCCCCCCCCceEEEeeeccCCceeeeE
Q 005034          333 GVDIISLSITPNRRPP-GIATFFNPIDMAL-LS--AAKAGIFVVQAAGNTGPSPKSMSSFSPWIFTVGAASHDRIYTNSI  408 (718)
Q Consensus       333 g~~ViN~S~G~~~~~~-~~~~~~~~~~~a~-~~--a~~~GilvV~AAGN~g~~~~~~~~~~~~vitVgA~~~~~~~~~~~  408 (718)
                      +++|||||||...... ....+...+.+++ +.  +.++|++||+||||+|......     ..                
T Consensus       170 ~~~Vin~S~G~~~~~~~~~~~~~~~~~~~~~~~~~a~~~GilvV~AAGN~g~~~~~~-----~~----------------  228 (600)
T 2oxa_A          170 DNRVFNHSYRMSVVDPRSANSLDQSQLDRLFEQQTLKAQGAAYIKAAGNGFNKIAAG-----GY----------------  228 (600)
T ss_dssp             TCSEEEECCCCCCSSCCCSCSHHHHHHHHHHHHHHHSTTCCEEEEECCSCSSEEEET-----TE----------------
T ss_pred             CCeEEEEeccCCCCCccccCchhHHHHHHHHHHHHhccCCcEEEEecCCCCccCCCC-----cc----------------
Confidence            9999999999865321 1111222333222 32  4578999999999998742100     00                


Q ss_pred             EeCCCceEeeeccCCCCCceEEEEEcccccCCCCcccCCccccccCCCCCCccCCcCceEEEEEeecccccCcchHHHHH
Q 005034          409 ILGNSLTISGVGLAPGTDKMYTLISALHALNNNTTTTDDMYVGECQDSSNFNQDLVQGNLLICSYSIRFVLGLSTIKQAF  488 (718)
Q Consensus       409 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~g~i~~~~~~~~~~~~~~~~~~~~  488 (718)
                                        ..||-....           ....+.|..    +.                           
T Consensus       229 ------------------~~~Pa~~~~-----------~~p~~~~n~----~~---------------------------  248 (600)
T 2oxa_A          229 ------------------VLNRTGNGP-----------KLPFENSNL----DP---------------------------  248 (600)
T ss_dssp             ------------------EEEEESCSS-----------CCCSSBTTS----SG---------------------------
T ss_pred             ------------------eecCccccc-----------ccccccccc----CC---------------------------
Confidence                              000000000           000111110    00                           


Q ss_pred             HHHHhCCCcEEEEEeCCCccCcccCCCCCCCCeEEecCcchHHHHHHHHhccCCCccccceeeeeceeEEEecccccccC
Q 005034          489 ETAKNLSAAGIVFYMDPFVIGFQLNPTPMKMPGIIIPSPDDSKILLQYYNSSLERDEVTKKIIKFGAVACILGGLKANFS  568 (718)
Q Consensus       489 ~~~~~~ga~~vi~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  568 (718)
                                                     |                        .....+|+|+++            
T Consensus       249 -------------------------------~------------------------~~s~~vItVgA~------------  261 (600)
T 2oxa_A          249 -------------------------------S------------------------NSNFWNLVVSAL------------  261 (600)
T ss_dssp             -------------------------------G------------------------GGSSSEEEEEEE------------
T ss_pred             -------------------------------c------------------------ccCceeEEEecc------------
Confidence                                           0                        011124444443            


Q ss_pred             CCCCceeccccCCCCCCCCCCCCCCCCCCceeccCCceeecccC-------CCC--CC---------------ccccCcc
Q 005034          569 NSAPKIMYYSARGPDPEDSFLDDADIMKPNLVAPGNSIWAAWSS-------LGT--DS---------------VEFQGES  624 (718)
Q Consensus       569 ~~~~~~a~fSs~Gpt~~~~~~~~~g~~KPDI~APG~~I~Sa~~~-------~~~--~~---------------~~~~~~~  624 (718)
                      ...+.++.||++||+.             ||+|||++|.+..+.       ...  ..               .....+.
T Consensus       262 ~~~g~~a~fS~~G~~v-------------dv~APG~~i~~~~p~i~ttd~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~  328 (600)
T 2oxa_A          262 NADGVRSSYSSVGSNI-------------FLSATGGEYGTDTPAMVTTDLPGCDMGYNRTDDPSTNRLHGNSQLDASCDY  328 (600)
T ss_dssp             CTTSSBCTTCCBCTTE-------------EEEEECCSCSSSSCCEEEECCSSTTSSSSSTTSCCSSTTTTCTTTCTTCCE
T ss_pred             cCCCCcCCcCCCCCCe-------------EEEeccCCCCcCCCceEeccccccccccccccccccccccccccccCCccc
Confidence            2235689999999987             899999997554331       000  00               0011234


Q ss_pred             ccccCchhhhhHHHHHHHHHHHHhCCCCCHHHHHHHHHhcccccccCCCcccccc-----------ccCCCC-CCCCCCC
Q 005034          625 FAMMSGTSMAAPHIAGLAALIKQKFPSFSPSAIASALSTSATLYDKNGGPIMAQR-----------AYAKPD-ENQSPAT  692 (718)
Q Consensus       625 y~~~sGTSmAaP~VAG~aALl~q~~p~ls~~~ik~~L~~TA~~~~~~~~~~~~~~-----------~~~~~~-~~~~~~~  692 (718)
                      |..++|||||||||||++|||+|++|+|++++||++|++||++++....++.-..           ...++. .......
T Consensus       329 y~~~sGTS~AaP~VAGvaALl~s~~P~lt~~~vk~~L~~tA~~~~~~~~~~~~~~~~~~G~~~~~~~~~~w~~n~~g~~~  408 (600)
T 2oxa_A          329 NGVMNGTSSATPSTSGAMALLMSAYPDLSVRDLRDLLARSATRVDAKHQPVMVSYTSSTGKVRDVKGLEGWERNAAGMWF  408 (600)
T ss_dssp             EEEECSHHHHHHHHHHHHHHHHHHSTTSCHHHHHHHHHHHCBCCSTTCCCEEEEEECTTSCEEEEEEECCSEECTTSCEE
T ss_pred             ccccccchHHhHHHHHHHHHHHHhCCCCCHHHHHHHHHHhCccCCcccccccccccccccccccccccccccccCCCccc
Confidence            8899999999999999999999999999999999999999999876543221000           000000 0112224


Q ss_pred             CCccccccccccccCCC
Q 005034          693 PFDMGSGFVNATASLDP  709 (718)
Q Consensus       693 ~~~~G~G~vn~~~Al~~  709 (718)
                      +..||||+||+.+||+.
T Consensus       409 ~~~~G~G~vda~~Av~~  425 (600)
T 2oxa_A          409 SPTYGFGLIDVNKALEL  425 (600)
T ss_dssp             BTTTBTCBCCHHHHHHH
T ss_pred             cccCCCchhhHHHHHHH
Confidence            67899999999999863


No 33 
>3lxu_X Tripeptidyl-peptidase 2; spindle complex, aminopeptidase, hydrolase, phosphoprotein, protease; 3.14A {Drosophila melanogaster}
Probab=100.00  E-value=4.4e-43  Score=415.70  Aligned_cols=244  Identities=25%  Similarity=0.350  Sum_probs=179.4

Q ss_pred             CCCCCCccccccccccCCCCCccccccccCccccccCCceEEEEeecccCCCC--CHHHHHHHHHHHHH-----CCCCEE
Q 005034          265 FDGDGHGSHTASVAAGNHGIPVVVTGHHFGNASGMAPRSHIAVYKALYKSFGG--FAADVVAAIDQAAQ-----DGVDII  337 (718)
Q Consensus       265 ~d~~gHGThVAGiiag~~~~~~~~~g~~~~~~~GvAp~A~i~~~kv~~~~~~~--~~~~i~~ai~~a~~-----~g~~Vi  337 (718)
                      .|++||||||||||+|.. ++        .++.||||+|+|+.+|+++...+.  ...+++.+|.+|++     .|++||
T Consensus       267 ~D~~GHGThVAGIIAa~~-N~--------~g~~GVAP~AkI~~vKVld~~~g~~~t~s~l~~AI~~Aid~a~~~~gadVI  337 (1354)
T 3lxu_X          267 GMSSPHGTHVSSIASGNH-SS--------RDVDGVAPNAKIVSMTIGDGRLGSMETGTALVRAMTKVMELCRDGRRIDVI  337 (1354)
T ss_dssp             ECCCHHHHHHHHHHCCCC-SS--------SSSCCSCTTCEEEEEECBCTTTSSCBCHHHHHHHHHHHHHHHHTTCCCCEE
T ss_pred             CCCCCcHHHHHHHHhcCC-CC--------CCceeecCCCEEEEEEeccCCCCcccChHHHHHHHHHHHHHHhhcCCceEE
Confidence            478899999999999985 22        356899999999999999764332  45677777777777     799999


Q ss_pred             EEcCCCCCCCCCCCccccHHHHHHHHHH-HCCCEEEEecCCCCCCCC--CCCCC--CCceEEEeeeccCCceeeeEEeCC
Q 005034          338 SLSITPNRRPPGIATFFNPIDMALLSAA-KAGIFVVQAAGNTGPSPK--SMSSF--SPWIFTVGAASHDRIYTNSIILGN  412 (718)
Q Consensus       338 N~S~G~~~~~~~~~~~~~~~~~a~~~a~-~~GilvV~AAGN~g~~~~--~~~~~--~~~vitVgA~~~~~~~~~~~~~~~  412 (718)
                      |||||......    ....+..++..+. ++|++||+||||+|.+..  .+|+.  ++++|+|||++.+......+..  
T Consensus       338 NmS~G~~~~~~----~~~~l~~aI~~A~~~~GVlVVaAAGN~G~~~~ti~~PA~~ss~~VItVGAtd~~~~~~a~ys~--  411 (1354)
T 3lxu_X          338 NMSYGEHANWS----NSGRIGELMNEVVNKYGVVWVASAGNHGPALCTVGTPPDISQPSLIGVGAYVSPQMMEAEYAM--  411 (1354)
T ss_dssp             EECCCCCCSCS----SCCHHHHHHHHHHHTSCCEEEEECCSCCSSSSCCCTTTCSSSSCEEEEEEECCTTCCCC------
T ss_pred             EcCCccCCCCC----ccHHHHHHHHHHHHhCCcEEEEeCCCCCCCCCccCCcccccCCceEEEEeecCCCCccccccc--
Confidence            99999875432    2356777777775 899999999999998643  36774  8999999998654321100000  


Q ss_pred             CceEeeeccCCCCCceEEEEEcccccCCCCcccCCccccccCCCCCCccCCcCceEEEEEeecccccCcchHHHHHHHHH
Q 005034          413 SLTISGVGLAPGTDKMYTLISALHALNNNTTTTDDMYVGECQDSSNFNQDLVQGNLLICSYSIRFVLGLSTIKQAFETAK  492 (718)
Q Consensus       413 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~g~i~~~~~~~~~~~~~~~~~~~~~~~~  492 (718)
                                                                                                      
T Consensus       412 --------------------------------------------------------------------------------  411 (1354)
T 3lxu_X          412 --------------------------------------------------------------------------------  411 (1354)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             hCCCcEEEEEeCCCccCcccCCCCCCCCeEEecCcchHHHHHHHHhccCCCccccceeeeeceeEEEecccccccCCCCC
Q 005034          493 NLSAAGIVFYMDPFVIGFQLNPTPMKMPGIIIPSPDDSKILLQYYNSSLERDEVTKKIIKFGAVACILGGLKANFSNSAP  572 (718)
Q Consensus       493 ~~ga~~vi~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  572 (718)
                                                                                                .....+
T Consensus       412 --------------------------------------------------------------------------~~~~~g  417 (1354)
T 3lxu_X          412 --------------------------------------------------------------------------REKLPG  417 (1354)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------ccCCCC
Confidence                                                                                      001124


Q ss_pred             ceeccccCCCCCCCCCCCCCCCCCCceeccCCceeecccCCCCCCccccCccccccCchhhhhHHHHHHHHHHHH----h
Q 005034          573 KIMYYSARGPDPEDSFLDDADIMKPNLVAPGNSIWAAWSSLGTDSVEFQGESFAMMSGTSMAAPHIAGLAALIKQ----K  648 (718)
Q Consensus       573 ~~a~fSs~Gpt~~~~~~~~~g~~KPDI~APG~~I~Sa~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~q----~  648 (718)
                      .+++|||+||+.+       ++.||||+|||++|+++...        .++.|..++|||||||||||++|||++    +
T Consensus       418 ~~asFSS~GPt~d-------g~~KpDIaAPG~~I~St~~~--------~~~~y~~~SGTSmAAP~VAGvAALLLSalkq~  482 (1354)
T 3lxu_X          418 NVYTWTSRDPCID-------GGQGVTVCAPGGAIASVPQF--------TMSKSQLMNGTSMAAPHVAGAVALLISGLKQQ  482 (1354)
T ss_dssp             CCCCCCCCSCCSS-------SSCCEEEEEEC-----------------------CCCCGGGCHHHHHHHHHHHHHHHHHT
T ss_pred             ccccccCCCCCcc-------CCCcceEEecCceEEEeecC--------CCCceecCCCCCHHHHHHHHHHHHHHHhhHhh
Confidence            5799999999986       79999999999999997532        245899999999999999999999986    8


Q ss_pred             CCCCCHHHHHHHHHhcccccccCCCccccccccCCCCCCCCCCCCCccccccccccccCCCCee
Q 005034          649 FPSFSPSAIASALSTSATLYDKNGGPIMAQRAYAKPDENQSPATPFDMGSGFVNATASLDPGLV  712 (718)
Q Consensus       649 ~p~ls~~~ik~~L~~TA~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~G~vn~~~Al~~~l~  712 (718)
                      +|++++.+||++|++||++++..                    ++..||+|+||+.+|++..+.
T Consensus       483 ~P~LTp~qVk~lL~~TA~~~~~~--------------------~~~~~G~GlLDa~~AV~~a~~  526 (1354)
T 3lxu_X          483 NIEYSPYSIKRAISVTATKLGYV--------------------DPFAQGHGLLNVEKAFEHLTE  526 (1354)
T ss_dssp             TCCCCHHHHHHHHHTTSBCCTTS--------------------CTTTSSSSBCCHHHHHHHHHT
T ss_pred             CCCCCHHHHHHHHHHhCccCCCC--------------------CcccccCCEeCHHHHHHHHHh
Confidence            99999999999999999987532                    246799999999999975443


No 34 
>3hjr_A Extracellular serine protease; kexin, hydrolase; 1.65A {Aeromonas sobria}
Probab=100.00  E-value=5.6e-43  Score=403.88  Aligned_cols=155  Identities=21%  Similarity=0.305  Sum_probs=110.6

Q ss_pred             cccccCCCCCCCCCcEEEEEccccCCCCCCCcCCCCCCCCCCCCCCCccccccCCCCCCCCCceeeeeeecchhhhhcCc
Q 005034          175 AWIQEGGYETAGEGVVIGFIDTGIDPTHPSFADDASEHSYPVPSHFSGICEVTRDFPSGSCNRKLIGARHFAASAITRGI  254 (718)
Q Consensus       175 ~w~~~~~~~~~G~gv~VaVIDtGid~~Hp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~  254 (718)
                      +|..    +++|+||+|||||||||++||||.++...                             +.++|..+      
T Consensus        62 aw~~----g~tG~GV~VaViDtGid~~HpDL~~n~~~-----------------------------~~~~~~~~------  102 (600)
T 3hjr_A           62 AHRT----GVLGQGVNVAVVDDGLAIAHPDLADNVRP-----------------------------GSKNVVTG------  102 (600)
T ss_dssp             HHHH----TCSCTTCEEEEESSCCCTTCTTTGGGBCS-----------------------------CCBCTTTS------
T ss_pred             HHHc----CCCCCCeEEEEEcCCCCCCChhHhhcccc-----------------------------CcceeecC------
Confidence            6776    79999999999999999999999986440                             11112111      


Q ss_pred             cCCCCCCCCCCCCCCCccccccccccCCCCCccccccccCccccccCCceEEEEeecccCCCCCHHHHHHHH-HHHHHCC
Q 005034          255 FNSSQDYASPFDGDGHGSHTASVAAGNHGIPVVVTGHHFGNASGMAPRSHIAVYKALYKSFGGFAADVVAAI-DQAAQDG  333 (718)
Q Consensus       255 ~~~~~~~~~~~d~~gHGThVAGiiag~~~~~~~~~g~~~~~~~GvAp~A~i~~~kv~~~~~~~~~~~i~~ai-~~a~~~g  333 (718)
                         ..+.....|.++|||||||||||..+ +        .++.||||+|+|+.+|+++....+..++++.++ +++..++
T Consensus       103 ---~~dp~p~~~~~gHGThVAGiIAa~~n-~--------~g~~GVAp~A~l~~~rvl~~~~~~~~~~~~~a~~~~~~~~~  170 (600)
T 3hjr_A          103 ---SDDPTPTDPDTAHGTSVSGIIAAVDN-A--------IGTKGIAPRAQLQGFNLLDDNSQQLQKDWLYALGDSNASRD  170 (600)
T ss_dssp             ---SSCCCCCSTTCCHHHHHHHHHHCCSS-S--------SSCCCSSTTCEEEEECTTSTTCCCCHHHHHHHTTSSHHHHT
T ss_pred             ---CCCCCCCCCCCChHHHHHHHHhEeCC-C--------CCcEEeCCCCEEEEEEeecCCCCccHHHHHHHhhhhhhhcC
Confidence               11112234678999999999998642 1        245799999999999999886778888888776 6678889


Q ss_pred             CCEEEEcCCCCCCCCCC--CccccHHHHHHHHH--HHCCCEEEEecCCCCC
Q 005034          334 VDIISLSITPNRRPPGI--ATFFNPIDMALLSA--AKAGIFVVQAAGNTGP  380 (718)
Q Consensus       334 ~~ViN~S~G~~~~~~~~--~~~~~~~~~a~~~a--~~~GilvV~AAGN~g~  380 (718)
                      ++|||||||........  ......++.++...  ..+|+++|+||||.+.
T Consensus       171 ~~I~n~S~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~v~AaGNg~~  221 (600)
T 3hjr_A          171 NRVFNQSYGMSVVDPRSANSLDQSQLDRLFEQQTLKAQGAAYIKAAGNGFN  221 (600)
T ss_dssp             CSEEEECCCCCCSSCCCSCSHHHHHHHHHHHHHHHSTTCCEEEEECCSCSS
T ss_pred             CCEEecccCccccCCccCCcchhhhHHHHHHHhhhccCCcEEEEeccCccc
Confidence            99999999975432111  11122333333322  3579999999999875


No 35 
>1t1e_A Kumamolisin; proenzyme, prosubtilase, activation mechanism, sedolisin, serine-carboxyl proteinase, hydrolase; 1.18A {Bacillus SP} SCOP: c.41.1.2 d.58.3.2 PDB: 1t1g_A 1t1i_A 1gt9_1 1gtg_1 1gtj_1* 1gtl_1* 1sio_A* 1sn7_A 1zvj_A 1siu_A 1zvk_A
Probab=99.92  E-value=3.3e-26  Score=257.59  Aligned_cols=100  Identities=28%  Similarity=0.386  Sum_probs=80.9

Q ss_pred             ccccccCCceEEEEeecccCCCCCHHHHHHHHHHHHH---CCCCEEEEcCCCCCCCCCCCccccHHHHHHHHHHHCCCEE
Q 005034          295 NASGMAPRSHIAVYKALYKSFGGFAADVVAAIDQAAQ---DGVDIISLSITPNRRPPGIATFFNPIDMALLSAAKAGIFV  371 (718)
Q Consensus       295 ~~~GvAp~A~i~~~kv~~~~~~~~~~~i~~ai~~a~~---~g~~ViN~S~G~~~~~~~~~~~~~~~~~a~~~a~~~Gilv  371 (718)
                      .+.||||+|+|+.+++.+     ...+++++|+|+++   ++++|||||||...... ...+.+.++.++..|..+||+|
T Consensus       273 ~~~gvAp~a~i~~~~~~~-----~~~~~~~ai~~av~~~~~~~~VIS~S~G~~e~~~-~~~~~~~~~~~~~~a~~~Gi~v  346 (552)
T 1t1e_A          273 VAGALAPGAKIAVYFAPN-----TDAGFLNAITTAVHDPTHKPSIVSISWGGPEDSW-APASIAAMNRAFLDAAALGVTV  346 (552)
T ss_dssp             HHHHHCTTSEEEEEECCS-----SHHHHHHHHHHHHTCTTTCCSEEEECEEEEGGGS-CHHHHHHHHHHHHHHHHTTCEE
T ss_pred             hhhccCCCCeEEEEEcCC-----CCchHHHHHHHHHhcccCCCCEEEecccCCcccC-CHHHHHHHHHHHHHHHhCCeEE
Confidence            457999999999999732     45789999999998   78999999999764211 0123457888888899999999


Q ss_pred             EEecCCCCCCC--------CCCCCCCCceEEEeeecc
Q 005034          372 VQAAGNTGPSP--------KSMSSFSPWIFTVGAASH  400 (718)
Q Consensus       372 V~AAGN~g~~~--------~~~~~~~~~vitVgA~~~  400 (718)
                      |+||||+|...        ..+|+.+|+|++||+++.
T Consensus       347 v~AsGd~G~~~~~~~~~~~~~~PAs~P~V~aVGat~~  383 (552)
T 1t1e_A          347 LAAAGDSGSTDGEQDGLYHVDFPAASPYVLACGGTRL  383 (552)
T ss_dssp             EEECCSBGGGTTCCSSSCCCEETTTSTTSEEEEEEEE
T ss_pred             EEecCCCCCCCCCCCCcccccCcccCCCEEEEecccc
Confidence            99999999643        457788999999999864


No 36 
>1ga6_A Serine-carboxyl proteinase; serine-carboxyl proteinase, hydrolase-hydrolase inhibitor CO; 1.00A {Pseudomonas SP} SCOP: c.41.1.2 PDB: 1ga4_A* 1ga1_A 1kdv_A* 1kdy_A* 1kdz_A* 1ke1_A* 1ke2_A* 1nlu_A*
Probab=99.87  E-value=6.7e-23  Score=219.92  Aligned_cols=102  Identities=16%  Similarity=0.154  Sum_probs=81.4

Q ss_pred             cccCCceEEEEeecccCCCCCHHHHHHHHHHHHH-CCCCEEEEcCCCCCCCCCCCccccHHHHHHHHHHHCCCEEEEecC
Q 005034          298 GMAPRSHIAVYKALYKSFGGFAADVVAAIDQAAQ-DGVDIISLSITPNRRPPGIATFFNPIDMALLSAAKAGIFVVQAAG  376 (718)
Q Consensus       298 GvAp~A~i~~~kv~~~~~~~~~~~i~~ai~~a~~-~g~~ViN~S~G~~~~~~~~~~~~~~~~~a~~~a~~~GilvV~AAG  376 (718)
                      .+||+++++.+++.+. .....++++.+|+||++ ++++|||||||..........+.+.++++++.+..+||+||+|||
T Consensus        91 ~~aP~a~~~~~~~~~~-~~~~~~~~~~ai~~av~~~~~~ViS~S~G~~e~~~~~~~~~~~~~~~~~~a~~~Gitvv~AsG  169 (372)
T 1ga6_A           91 SAGGAVQQLLFYMADQ-SASGNTGLTQAFNQAVSDNVAKVINVSLGWCEADANADGTLQAEDRIFATAAAQGQTFSVSSG  169 (372)
T ss_dssp             HTTSCEEEEEEEEECT-TSSTTHHHHHHHHHHHHHCCCSEEEECCCEEHHHHHHTTHHHHHHHHHHHHHHTTCEEEEECC
T ss_pred             hcCCCCcEEEEEeCCC-CCcccHHHHHHHHHHHhcCCCCEEEeCCCCCCCCCchHHHHHHHHHHHHHHHhCCcEEEEEEC
Confidence            5789999999999865 23566789999999998 899999999997532100012346788899999999999999999


Q ss_pred             CCCCCC-------------CCCCCCCCceEEEeeecc
Q 005034          377 NTGPSP-------------KSMSSFSPWIFTVGAASH  400 (718)
Q Consensus       377 N~g~~~-------------~~~~~~~~~vitVgA~~~  400 (718)
                      |+|...             ..+|+.+|+|++||+++.
T Consensus       170 d~G~~~~~~~g~~~~~~~~~~~PAs~P~V~aVGat~~  206 (372)
T 1ga6_A          170 DEGVYECNNRGYPDGSTYSVSWPASSPNVIAVGGTTL  206 (372)
T ss_dssp             SBTTBTTTTTTCCCTTCCBCEETTTCTTSEEEEEEEE
T ss_pred             CCCCccccccCccCCccCCcCCCCCCCCeEEEEeeec
Confidence            999753             246788999999999874


No 37 
>3edy_A Tripeptidyl-peptidase 1; protease, TPP1, sedolisin, batten disease, lincl, zymogen, P exopeptidase, endopeptidase, S53 family, CLN2; HET: NAG; 1.85A {Homo sapiens} PDB: 3ee6_A*
Probab=99.14  E-value=1.5e-10  Score=129.44  Aligned_cols=101  Identities=16%  Similarity=0.231  Sum_probs=66.4

Q ss_pred             ccccCCceEEEEeecccCCCCCHHHHHHHHHHHH--HCCCCEEEEcCCCCCCCCCCCccccHHHHHHHHHHHCCCEEEEe
Q 005034          297 SGMAPRSHIAVYKALYKSFGGFAADVVAAIDQAA--QDGVDIISLSITPNRRPPGIATFFNPIDMALLSAAKAGIFVVQA  374 (718)
Q Consensus       297 ~GvAp~A~i~~~kv~~~~~~~~~~~i~~ai~~a~--~~g~~ViN~S~G~~~~~~~~~~~~~~~~~a~~~a~~~GilvV~A  374 (718)
                      .+++++..++.+.....  ......++..+.+..  .+-+.|||+|||....... ..+.+.++.++..+..+||.|++|
T Consensus       262 ~a~~~~i~~~~~~~~g~--~~~~e~~l~~l~~l~~~~~~~~ViS~S~G~~e~~~~-~~y~~~~~~~~~~~~~~Gitv~~A  338 (544)
T 3edy_A          262 MSAGANISTWVYSSPGR--HEGQEPFLQWLMLLSNESALPHVHTVSYGDDEDSLS-SAYIQRVNTELMKAAARGLTLLFA  338 (544)
T ss_dssp             HHHSTTSEEEEECCCSC--CTTCCHHHHHHHHHTTCSSCCSEEEEECCEEGGGSC-HHHHHHHHHHHHHHHHTTCEEEEE
T ss_pred             hccCCCceEEEEecCCc--ccccccHHHHHHHHhccCCCCcEEEecCCCcccccC-HHHHHHHHHHHHHHHhCCeEEEEe
Confidence            35566666655543221  111122333343333  2458999999998653211 234566778888899999999999


Q ss_pred             cCCCCCCC----------CCCCCCCCceEEEeeecc
Q 005034          375 AGNTGPSP----------KSMSSFSPWIFTVGAASH  400 (718)
Q Consensus       375 AGN~g~~~----------~~~~~~~~~vitVgA~~~  400 (718)
                      +||+|..+          ..+|+.+|+|++||+++.
T Consensus       339 SGD~G~~~~~~~~~~~~~~~~Pas~P~VtaVGgT~l  374 (544)
T 3edy_A          339 SGDSGAGCWSVSGRHQFRPTFPASSPYVTTVGGTSF  374 (544)
T ss_dssp             CCSSTTBCEEETTEEECCCEETTTCTTSEEEEEEEE
T ss_pred             cCCCCccccCCCCCccccCCCcCCCCcEEEEeeeec
Confidence            99999754          356788999999999864


No 38 
>3cnq_P Subtilisin BPN'; uncleaved, proenzyme, substrate complex, hydrolase, metal- binding, protease, secreted, serine protease, sporulation; 1.71A {Bacillus amyloliquefaciens} PDB: 3bgo_P 3co0_P 1spb_P 1scj_B
Probab=98.49  E-value=3.7e-07  Score=75.09  Aligned_cols=48  Identities=19%  Similarity=0.203  Sum_probs=43.5

Q ss_pred             CCCceEEEEecceeeeEEEEeCHHHHHHHhcCCCeEEEEeCceeccccC
Q 005034          115 GEKYLKLYSYHYLINGFSVFVTPQQAEKLSRRREVANVVSDFSVRTATT  163 (718)
Q Consensus       115 ~~~~~~~~~~~~~~ng~~v~~~~~~~~~L~~~p~V~~v~~~~~~~~~~~  163 (718)
                      ..+.++.++|.. ++||++++++++++.|+++|+|.+||++..+++..+
T Consensus        31 ~~g~~i~~~y~~-~~Gfaa~l~~~~~~~L~~~p~V~~Ve~D~~v~~~tt   78 (80)
T 3cnq_P           31 EKGGKLQKCFKY-VDAASATLNEKAVEELKKDPSVAYVEEDKLYRALSA   78 (80)
T ss_dssp             TTTCEEEEECSS-SSEEEEECCHHHHHHHHTCTTEEEEEECCEEEECCC
T ss_pred             HcCCcceEEEcc-cEEEEEEcCHHHHHHHHhCCCccEEEeCcEEEEeee
Confidence            346789999997 999999999999999999999999999999988654


No 39 
>2w2n_P Proprotein convertase subtilisin/kexin type 9; hydrolase-receptor complex, PCSK9, proprotein converta low-density lipoprotein receptor, EGF; 2.30A {Homo sapiens} PDB: 2w2m_P 2w2o_P 2w2p_P 2w2q_P 2xtj_P
Probab=98.28  E-value=1.8e-06  Score=75.95  Aligned_cols=45  Identities=24%  Similarity=0.152  Sum_probs=41.4

Q ss_pred             CCceEEEEecceeeeEEEEeCHHHHHHHhcCCCeEEEEeCceecc
Q 005034          116 EKYLKLYSYHYLINGFSVFVTPQQAEKLSRRREVANVVSDFSVRT  160 (718)
Q Consensus       116 ~~~~~~~~~~~~~ng~~v~~~~~~~~~L~~~p~V~~v~~~~~~~~  160 (718)
                      .+..+.++|...++||+++++++++++|+++|+|.+||++..++.
T Consensus        69 ~~~~i~~sY~~~~~GFaa~Lt~~~~~~L~~~P~V~~VE~D~~v~~  113 (114)
T 2w2n_P           69 YLTKILHVFHGLLPGFLVKMSGDLLELALKLPHVDYIEEDSSVFA  113 (114)
T ss_dssp             CCCEEEEEECSSSSEEEEECCGGGHHHHHTSTTEEEEEEEEEEEE
T ss_pred             cCCceEEEecccceEEEEEcCHHHHHHHHcCCCccEEEeCceEec
Confidence            466889999889999999999999999999999999999988764


No 40 
>2qtw_A Proprotein convertase subtilisin/kexin type 9 Pro; coronary heart disease, hypercholest low density lipoprotein receptor, autocatalytic cleavage; HET: NAG; 1.90A {Homo sapiens} PDB: 3m0c_A 2pmw_A 3h42_A 3bps_P 3gcw_P 3gcx_P 3p5b_P 3p5c_P
Probab=98.12  E-value=6.2e-06  Score=73.38  Aligned_cols=45  Identities=24%  Similarity=0.152  Sum_probs=41.2

Q ss_pred             CCceEEEEecceeeeEEEEeCHHHHHHHhcCCCeEEEEeCceecc
Q 005034          116 EKYLKLYSYHYLINGFSVFVTPQQAEKLSRRREVANVVSDFSVRT  160 (718)
Q Consensus       116 ~~~~~~~~~~~~~ng~~v~~~~~~~~~L~~~p~V~~v~~~~~~~~  160 (718)
                      .+.++.++|...++||++++++++++.|+++|+|.+||++..++.
T Consensus        79 ~g~~i~~~Y~~~~~GFaa~l~~~~~~~L~~~p~V~~VE~D~~v~a  123 (124)
T 2qtw_A           79 YLTKILHVFHGLLPGFLVKMSGDLLELALKLPHVDYIEEDSSVFA  123 (124)
T ss_dssp             CCCEEEEEECSSSCEEEEECCGGGHHHHHTSTTEEEEEEEEEEEE
T ss_pred             cCCceEEEecccceEEEEEcCHHHHHHHHcCCCCcEEEeCceEec
Confidence            456889999889999999999999999999999999999988764


No 41 
>1v5i_B POIA1, IA-1=serine proteinase inhibitor; protease-inhibitor complex, subtilisin, hydrolase-Pro binding complex; 1.50A {Pleurotus ostreatus} SCOP: d.58.3.2 PDB: 1itp_A
Probab=98.01  E-value=1.3e-05  Score=64.96  Aligned_cols=44  Identities=18%  Similarity=0.164  Sum_probs=38.4

Q ss_pred             CceEEEEe-cceeeeEEEEeCHHHHHHHhcC--CCeEEEEeCceecc
Q 005034          117 KYLKLYSY-HYLINGFSVFVTPQQAEKLSRR--REVANVVSDFSVRT  160 (718)
Q Consensus       117 ~~~~~~~~-~~~~ng~~v~~~~~~~~~L~~~--p~V~~v~~~~~~~~  160 (718)
                      +.++.+.| ..+++||+++++++.++.|+++  |.|.+||++..+..
T Consensus        29 gg~i~~~y~~~~~~Gfa~~~~~~~l~~l~~~~~p~V~~VE~D~~v~~   75 (76)
T 1v5i_B           29 GGTITNEYNMPGMKGFAGELTPQSLTKFQGLQGDLIDSIEEDHVAHA   75 (76)
T ss_dssp             TCCCCEEEEETTEEEEEEEECHHHHHHHHHTBTTTEEEEEECCEEEC
T ss_pred             CCceEEEEEcCceeEEEEEcCHHHHHHHHhcCCCCCcEEcCCcEEeC
Confidence            34677778 4699999999999999999999  89999999988764


No 42 
>3icu_A E3 ubiquitin-protein ligase RNF128; E3 ligase, energy, PA domain, transmembrane,protein turnover conjugation pathway; HET: NAG; 2.10A {Homo sapiens}
Probab=97.17  E-value=0.0018  Score=61.81  Aligned_cols=85  Identities=19%  Similarity=0.200  Sum_probs=60.8

Q ss_pred             cccccCCCCCCccC------CcCceEEEEEeecccccCc-chHHHHHHHHHhCCCcEEEEEeCCCcc---CcccCCCCCC
Q 005034          449 YVGECQDSSNFNQD------LVQGNLLICSYSIRFVLGL-STIKQAFETAKNLSAAGIVFYMDPFVI---GFQLNPTPMK  518 (718)
Q Consensus       449 ~~~~c~~~~~~~~~------~~~g~i~~~~~~~~~~~~~-~~~~~~~~~~~~~ga~~vi~~~~~~~~---~~~~~~~~~~  518 (718)
                      ....|.....+...      ..+|+|+|+.|      |. |+|.+|+.+++++||.++|+||+....   .....+....
T Consensus        82 ~~~GC~~~~~~~~~~~~~~~~~~gkIaLV~R------G~~CsF~~Kv~nAq~aGA~avIIyNn~~~g~~~~~m~~~~~~~  155 (194)
T 3icu_A           82 ALNACNPHTNFTVPTVWGSTVQVSWLALIQR------GGGCTFADKIHLAYERGASGAVIFNFPGTRNEVIPMSHPGAVD  155 (194)
T ss_dssp             CTTCCSTTCCBCCCBCTTSSCBCCEEEEEES------CTTCCHHHHHHHHHHTTCSEEEEECCTTCTTCCCCCCCTTCCS
T ss_pred             CcCCCCCCccccCCcccccccCCCeEEEEEC------CCCcCHHHHHHHHHHCCCcEEEEEeCCCCCCceeeecCCCCCc
Confidence            35688754433211      24789999998      67 999999999999999999999985211   1111223356


Q ss_pred             CCeEEecCcchHHHHHHHHhcc
Q 005034          519 MPGIIIPSPDDSKILLQYYNSS  540 (718)
Q Consensus       519 ~p~~~~~~~~~~~~l~~~~~~~  540 (718)
                      ||.++| +..++..|++++...
T Consensus       156 IPsv~I-s~~~G~~L~~~L~~G  176 (194)
T 3icu_A          156 IVAIMI-GNLKGTKILQSIQRG  176 (194)
T ss_dssp             SEEEEE-CHHHHHHHHHHHHTT
T ss_pred             eeEEEE-CHHHHHHHHHHHHCC
Confidence            888777 667788999888764


No 43 
>2z30_B TK-subtilisin; thermococcus kodakaraensis, hydrolase; 1.65A {Thermococcus kodakarensis} PDB: 2z2y_B 3a3p_B 2z56_B 2z58_B 2z57_B 3a3n_B 3a3o_B
Probab=96.46  E-value=0.0028  Score=49.26  Aligned_cols=48  Identities=23%  Similarity=0.200  Sum_probs=41.8

Q ss_pred             HhcCCCceEEEEecceeeeEEEEeCHHHHHHHhcCCCeEEEEeCceecc
Q 005034          112 AFKGEKYLKLYSYHYLINGFSVFVTPQQAEKLSRRREVANVVSDFSVRT  160 (718)
Q Consensus       112 ~~~~~~~~~~~~~~~~~ng~~v~~~~~~~~~L~~~p~V~~v~~~~~~~~  160 (718)
                      .....+.++.++|. .++++++++|++.++.|+++|+|++||+|..++.
T Consensus        17 ~i~~~gG~i~~~~~-~I~a~~~~lp~~~~~~L~~~p~V~yVE~D~~v~a   64 (65)
T 2z30_B           17 EVLGIGGHIVYQFK-LIPAVVVDVPANAVGKLKKMPGVEKVEFDHQAVL   64 (65)
T ss_dssp             GGGGGTCEEEEECS-SSSEEEEEECGGGHHHHHTSTTEEEEEECCEEEE
T ss_pred             HHHHCCCEEEEEec-CCcEEEEEeCHHHHHHHhcCCCceEEecCcEEEc
Confidence            34456889999995 7999999999999999999999999999987653


No 44 
>1y9z_A Alkaline serine protease; subtilisin-like alpha/beta domain, insert beta barrel domain hydrolase; HET: PMS; 1.40A {Pseudoalteromonas SP} PDB: 1v6c_A* 1wvm_A*
Probab=92.61  E-value=0.26  Score=53.60  Aligned_cols=39  Identities=18%  Similarity=0.308  Sum_probs=32.0

Q ss_pred             ceeeeeceeEEEecccccccCCCCCceeccccCCCCCCCCCCCCCCCCCCceeccCCceeeccc
Q 005034          548 KKIIKFGAVACILGGLKANFSNSAPKIMYYSARGPDPEDSFLDDADIMKPNLVAPGNSIWAAWS  611 (718)
Q Consensus       548 ~~~~~~~~~~~~~~~~~~~~~~~~~~~a~fSs~Gpt~~~~~~~~~g~~KPDI~APG~~I~Sa~~  611 (718)
                      .++|+|+++            ...+.++.||++||..             ||+|||++|+++++
T Consensus       172 ~~vi~VgA~------------~~~~~~~~~S~~g~~v-------------dv~ApG~~i~s~~~  210 (441)
T 1y9z_A          172 DSVMSVAAV------------DSNLDHAAFSQYTDQV-------------EISGPGEAILSTVT  210 (441)
T ss_dssp             TTEEEEEEE------------CTTCCBCTTSCCCTTE-------------EEEEECSSEEEECS
T ss_pred             CCeEEEEEE------------CCCCCCCccccCCCce-------------EEEeccCCeecccc
Confidence            367888875            3346789999999876             99999999999985


No 45 
>3lxu_X Tripeptidyl-peptidase 2; spindle complex, aminopeptidase, hydrolase, phosphoprotein, protease; 3.14A {Drosophila melanogaster}
Probab=89.72  E-value=0.23  Score=60.19  Aligned_cols=25  Identities=32%  Similarity=0.642  Sum_probs=23.5

Q ss_pred             CCCCCCcEEEEEccccCCCCCCCcC
Q 005034          183 ETAGEGVVIGFIDTGIDPTHPSFAD  207 (718)
Q Consensus       183 ~~~G~gv~VaVIDtGid~~Hp~~~~  207 (718)
                      .|+|+||+|||+|||||+.+|-|+-
T Consensus        32 ~ydGrgv~iai~DtGVDP~a~glq~   56 (1354)
T 3lxu_X           32 EYDGRDVTIAIFDSGVDPRATGLET   56 (1354)
T ss_dssp             TCSSTTCEEEEEESCCCTTSTTSSC
T ss_pred             CCCCCccEEEEEeCCCCCCCCccee
Confidence            5999999999999999999999984


No 46 
>2ek8_A Aminopeptidase; metalloproteinase, hydrolase; 1.80A {Aneurinibacillus SP} PDB: 2ek9_A*
Probab=88.73  E-value=1.3  Score=47.80  Aligned_cols=73  Identities=11%  Similarity=0.133  Sum_probs=53.6

Q ss_pred             CCccCCcCceEEEEEeecccccCcchHHHHHHHHHhCCCcEEEEEeCCCc--cCcccCCCCCCCCeEEecCcchHHHHHH
Q 005034          458 NFNQDLVQGNLLICSYSIRFVLGLSTIKQAFETAKNLSAAGIVFYMDPFV--IGFQLNPTPMKMPGIIIPSPDDSKILLQ  535 (718)
Q Consensus       458 ~~~~~~~~g~i~~~~~~~~~~~~~~~~~~~~~~~~~~ga~~vi~~~~~~~--~~~~~~~~~~~~p~~~~~~~~~~~~l~~  535 (718)
                      .+...+++|||+++.+      +.|.+.++..++...||.|+|+|++...  .+.........+|.+.+ +..++..|..
T Consensus       107 D~~~~dv~GkIvlv~~------g~~~~~~k~~~A~~~GA~gvIi~~~~~~~~~g~~~~~~~~~IP~~~I-s~~~a~~L~~  179 (421)
T 2ek8_A          107 DVAGKDLNGKIALIQR------GNISFADKVRNAAKQGAKAVIIYNNTDGKLNGTLGGSDASFVAAVGI-TKQEGDALAA  179 (421)
T ss_dssp             TTTTSCCTTSEEEEEC------CSSCHHHHHHHHHHTTCSEEEEECSSSSCCCCBCSSCCTTCCEEEEE-CHHHHHHHHH
T ss_pred             hcCCCCcCceEEEEeC------CCCCHHHHHHHHHHCCCeEEEEEeCCCcccccccCCCCCCCccEEEe-CHHHHHHHHH
Confidence            3444478999999987      5678899999999999999999998632  12111223456888775 5667888888


Q ss_pred             HH
Q 005034          536 YY  537 (718)
Q Consensus       536 ~~  537 (718)
                      .+
T Consensus       180 ~l  181 (421)
T 2ek8_A          180 NL  181 (421)
T ss_dssp             HH
T ss_pred             Hh
Confidence            77


No 47 
>3fed_A Glutamate carboxypeptidase III; metallopeptidase, bimetallic active site, N-glycosylation, C cation, chloride anion, zinc IONS, dipept glycoprotein; HET: NAG BIX; 1.29A {Homo sapiens} PDB: 3fec_A* 3fee_A* 3ff3_A* 2c6c_A* 2c6g_A* 2c6p_A* 2cij_A* 2jbj_A* 2jbk_A* 3rbu_A* 3bi1_A* 2oot_A* 2pvv_A* 2pvw_A* 2xei_A* 2or4_A* 3bi0_A* 3bhx_A* 3d7d_A* 3d7f_A* ...
Probab=70.78  E-value=3.5  Score=47.30  Aligned_cols=38  Identities=29%  Similarity=0.436  Sum_probs=34.1

Q ss_pred             CCcCceEEEEEeecccccCcchHHHHHHHHHhCCCcEEEEEeCC
Q 005034          462 DLVQGNLLICSYSIRFVLGLSTIKQAFETAKNLSAAGIVFYMDP  505 (718)
Q Consensus       462 ~~~~g~i~~~~~~~~~~~~~~~~~~~~~~~~~~ga~~vi~~~~~  505 (718)
                      .+++|||+++.+      +.|.+.+|+.+|+.+||.|+|+|+++
T Consensus       151 ~~v~GkIvlv~~------G~~~~~~Kv~~A~~~GA~gviiy~dp  188 (707)
T 3fed_A          151 INCTGKIVIARY------GKIFRGNKVKNAMLAGAIGIILYSDP  188 (707)
T ss_dssp             CCCTTCEEEEEC------CSSCHHHHHHHHHHTTCSEEEEECCH
T ss_pred             CCCCCeEEEEEC------CCCCHhHHHHHHHHCCCEEEEEEcCc
Confidence            468999999998      56889999999999999999999864


No 48 
>3kas_A Transferrin receptor protein 1; transferrin receptor 1, arenavirus, cell MEMB disulfide bond, endocytosis, HOST-virus inter receptor, secreted, transmembrane; HET: NAG FUC BMA MAN; 2.40A {Homo sapiens} PDB: 1de4_C* 3s9l_A* 3s9m_A* 3s9n_A* 1cx8_A* 1suv_A 2nsu_A
Probab=68.77  E-value=4  Score=46.24  Aligned_cols=39  Identities=31%  Similarity=0.523  Sum_probs=34.8

Q ss_pred             CCcCceEEEEEeecccccCcchHHHHHHHHHhCCCcEEEEEeCCC
Q 005034          462 DLVQGNLLICSYSIRFVLGLSTIKQAFETAKNLSAAGIVFYMDPF  506 (718)
Q Consensus       462 ~~~~g~i~~~~~~~~~~~~~~~~~~~~~~~~~~ga~~vi~~~~~~  506 (718)
                      .+++|||+++.+      +.|.+..|+.+|..+||.|+|+|++..
T Consensus       128 vdv~GkIvlv~~------g~~~~~~K~~~A~~~GA~gvii~~~~~  166 (640)
T 3kas_A          128 TPVNGSIVIVRA------GKITFAEKVANAESLNAIGVLIYMDQT  166 (640)
T ss_dssp             SCCTTSEEEEES------CSSCHHHHHHHHHTTTCSEEEEECCTT
T ss_pred             cccCCcEEEEec------CCCCHHHHHHHHHHCCCeEEEEEeccc
Confidence            468999999997      567889999999999999999999764


No 49 
>3iib_A Peptidase M28; YP_926796.1, structural genomics, J center for structural genomics, JCSG, protein structure INI PSI-2; HET: PGE; 1.70A {Shewanella amazonensis SB2B}
Probab=55.60  E-value=31  Score=37.11  Aligned_cols=79  Identities=11%  Similarity=0.066  Sum_probs=48.8

Q ss_pred             cCCcCceEEEEEeecccccCc---chHHHH----HHHHHhCCCcEEEEEeCCCcc------Ccc-cCCCCCCCCeEEecC
Q 005034          461 QDLVQGNLLICSYSIRFVLGL---STIKQA----FETAKNLSAAGIVFYMDPFVI------GFQ-LNPTPMKMPGIIIPS  526 (718)
Q Consensus       461 ~~~~~g~i~~~~~~~~~~~~~---~~~~~~----~~~~~~~ga~~vi~~~~~~~~------~~~-~~~~~~~~p~~~~~~  526 (718)
                      ..+++|||+++.+..+.....   +.+..+    ..++.++||.|+|++++....      +.. .......+|.+.+ +
T Consensus       124 ~~dvkGKIVlv~~~~~~~~~~~~y~~~~~kr~~~a~~A~~aGA~avIi~~~~~~~~~~~~tg~~~~~~~~~~IP~~~I-s  202 (444)
T 3iib_A          124 AGSLNDKIAFIDAKTERHRDGKGYGQTASGRSRGAVAAAEKGAVGIIIRSIGTDHDRMAHTGMMRYEEGVTAIPAAAI-S  202 (444)
T ss_dssp             TTTTTTCEEEECCCCCCCTTCHHHHHHHHHHHHHHHHHHHTTCSEEEEECSCSCCSSCCCCCBCCCCTTSCCCCEEEE-C
T ss_pred             ccccCccEEEEeCCCCCCcccccccchhhhhhhHHHHHHHCCCeEEEEEccCCcccccccCCccccCCCCCCCCeEEe-c
Confidence            457999999998743211000   112222    357999999999999864321      111 1122456888887 6


Q ss_pred             cchHHHHHHHHhcc
Q 005034          527 PDDSKILLQYYNSS  540 (718)
Q Consensus       527 ~~~~~~l~~~~~~~  540 (718)
                      ..++..|...+...
T Consensus       203 ~~da~~L~~~l~~g  216 (444)
T 3iib_A          203 NPDADLINAMLKRD  216 (444)
T ss_dssp             HHHHHHHHHHHTTT
T ss_pred             HHHHHHHHHHHhCC
Confidence            67778888777543


No 50 
>1wgl_A TOLL-interacting protein; CUE domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, immune system; NMR {Homo sapiens} SCOP: a.5.2.4
Probab=36.77  E-value=14  Score=27.57  Aligned_cols=31  Identities=19%  Similarity=0.187  Sum_probs=24.9

Q ss_pred             HHHHHHHHHHhCCCCCHHHHHHHHHhccccc
Q 005034          638 IAGLAALIKQKFPSFSPSAIASALSTSATLY  668 (718)
Q Consensus       638 VAG~aALl~q~~p~ls~~~ik~~L~~TA~~~  668 (718)
                      .--.+..|++.||+++.+.|+..|...-.++
T Consensus         9 ~ee~l~~L~emFP~ld~~~I~~vL~a~~gdv   39 (59)
T 1wgl_A            9 SEEDLKAIQDMFPNMDQEVIRSVLEAQRGNK   39 (59)
T ss_dssp             CHHHHHHHHHHCSSSCHHHHHHHHTTTTTCH
T ss_pred             CHHHHHHHHHHCCCCCHHHHHHHHHHcCCCH
Confidence            3345678999999999999999998765544


No 51 
>1ni7_A ER75, hypothetical protein YGDK; RD-structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; NMR {Escherichia coli} SCOP: d.224.1.1
Probab=34.48  E-value=30  Score=31.30  Aligned_cols=33  Identities=15%  Similarity=0.236  Sum_probs=27.7

Q ss_pred             ccCchhhhhHHHHHHHHHHHHhCCCCCHHHHHHH
Q 005034          627 MMSGTSMAAPHIAGLAALIKQKFPSFSPSAIASA  660 (718)
Q Consensus       627 ~~sGTSmAaP~VAG~aALl~q~~p~ls~~~ik~~  660 (718)
                      .+.|-| =|+.|-|++|||++.+-..+|+||.+.
T Consensus        78 ~F~adS-DA~IvkGL~AlL~~~~~G~tp~eIl~~  110 (155)
T 1ni7_A           78 HFFGDS-EGRIVRGLLAVLLTAVEGKTAAELQAQ  110 (155)
T ss_dssp             CCEEEE-SSHHHHHHHHHHHHHTTTCCHHHHHHS
T ss_pred             EEeeCC-ccHHHHHHHHHHHHHHcCCCHHHHHhC
Confidence            445666 479999999999999999999999763


No 52 
>3g0m_A Cysteine desulfuration protein SUFE; YNHA, csgid, national I of allergy and infectious diseases, niaid, hydrolase, struc genomics; 1.76A {Salmonella typhimurium LT2} SCOP: d.224.1.1 PDB: 1mzg_A
Probab=30.28  E-value=28  Score=30.96  Aligned_cols=33  Identities=21%  Similarity=0.337  Sum_probs=27.9

Q ss_pred             cccCchhhhhHHHHHHHHHHHHhCCCCCHHHHHH
Q 005034          626 AMMSGTSMAAPHIAGLAALIKQKFPSFSPSAIAS  659 (718)
Q Consensus       626 ~~~sGTSmAaP~VAG~aALl~q~~p~ls~~~ik~  659 (718)
                      ..+.|.| =|+.|-|++|||++.+-..+|+||.+
T Consensus        70 l~f~adS-DA~IvkGl~alL~~~~~G~tp~eIl~  102 (141)
T 3g0m_A           70 IELQGDS-DAAIVKGLMAVVFILYHQMTAQDIVH  102 (141)
T ss_dssp             EEEEEEE-SSHHHHHHHHHHHHHHTTCBHHHHHH
T ss_pred             EEEEecC-ccHHHHHHHHHHHHHHcCCCHHHHHh
Confidence            3455666 47999999999999999999999875


Done!