Query 005035
Match_columns 717
No_of_seqs 302 out of 1292
Neff 4.2
Searched_HMMs 29240
Date Mon Mar 25 13:24:26 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/005035.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/005035hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3tzt_A Glycosyl transferase fa 100.0 4.7E-41 1.6E-45 344.2 11.5 241 416-710 21-275 (276)
2 1g9r_A Glycosyl transferase; a 100.0 2.2E-36 7.5E-41 312.7 13.6 237 416-703 16-268 (311)
3 1ll2_A Glycogenin-1; protein-s 99.9 1.8E-22 6.3E-27 212.5 10.7 152 519-705 80-255 (333)
4 3u2u_A Glycogenin-1, GN-1, GN1 99.8 1.5E-20 5.1E-25 193.0 6.0 149 520-704 82-255 (263)
5 4ecm_A Glucose-1-phosphate thy 25.8 1.3E+02 0.0043 29.7 6.8 23 535-557 123-145 (269)
6 3umh_A Amyloid beta A4 protein 25.6 2.6E+02 0.0087 28.2 8.9 46 246-291 39-85 (211)
7 3v1a_A Computational design, M 24.9 67 0.0023 25.5 3.6 37 195-231 6-42 (48)
8 3pmr_A Amyloid-like protein 1; 20.9 4.4E+02 0.015 26.7 9.6 27 265-291 66-92 (219)
9 4e61_A Protein BIM1; EB1-like 20.6 77 0.0026 28.9 3.6 39 244-282 43-101 (106)
10 3k66_A Beta-amyloid-like prote 19.8 3.2E+02 0.011 28.0 8.4 76 204-291 4-87 (239)
No 1
>3tzt_A Glycosyl transferase family 8; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, putative glycosyl transferase; HET: MSE CIT; 2.10A {Anaerococcus prevotii} SCOP: c.68.1.0
Probab=100.00 E-value=4.7e-41 Score=344.23 Aligned_cols=241 Identities=18% Similarity=0.228 Sum_probs=170.4
Q ss_pred cccccccCCCCCCCCCCCCCCccEEEEEEeCcccHHH---HHHHHHhCCCCCceEEEEeecccccccCcchHHHhhcccc
Q 005035 416 RPLLSVDMSNSPCCIEPLQHPSNHVFHIVTDRLNYAA---MRMWFLANPPGRATVQVQNIEEFTWLNSSYSPVLKQLNSQ 492 (717)
Q Consensus 416 ~~~i~sil~ns~~~~e~~kep~~lVFHIVTD~~ny~a---Mk~WF~~Np~~~A~IeV~nIedf~wln~s~~PVLkqL~s~ 492 (717)
..+|.||++|+ ++ +++.|||++|+.+-.. ++.++. ..++.|+++.+++- + ++.+
T Consensus 21 ~v~i~Sl~~~~-------~~-~~~~~~il~~~is~~~~~~L~~~~~---~~~~~i~~~~~~~~-~--------~~~~--- 77 (276)
T 3tzt_A 21 KVLMTSIYINN-------PG-RIFDVYLIHSRISEDKLKDLGEDLK---KFSYTLYPIRATDD-L--------FSFA--- 77 (276)
T ss_dssp HHHHHHHHHHS-------TT-CCEEEEEEESCCCHHHHHHHHHHHH---TTTCEEEEEECC-------------------
T ss_pred HHHHHHHHHhC-------CC-CceEEEEEeCCCCHHHHHHHHHHHH---HcCCEEEEEEeCHH-H--------HhcC---
Confidence 35788899998 43 6899999999877654 444443 23567887766531 1 0110
Q ss_pred cceeEEecccccCCCcccccCCCCCccHhhhHHhhhhhhcCC-CCeEEEEecCeeEecCchhhhccCCCCCeeEEeeccc
Q 005035 493 SMIDYYFRAHRANSDSNLKFRNPKYLSILNHLRFYLPEVFPR-LNKVLFLDDDVVVQKDLSGLWSIDLKGKVNGAVETCG 571 (717)
Q Consensus 493 ~ii~~yF~~~~~~sd~~lk~r~p~yiS~lnylRFfIPeLfPe-lDKVLYLD~DVIVqgDLseLwdiDL~GkviAAVeDc~ 571 (717)
...+++|.++|+||++|+++|+ ++||||||+|+||++||++||++|++|+++|||+||+
T Consensus 78 --------------------~~~~~~s~~~~~rl~~~~l~p~~~~kvlylD~D~iv~~di~~L~~~dl~~~~~aav~d~~ 137 (276)
T 3tzt_A 78 --------------------KVTDRYPKEMYYRLLAGEFLPENLGEILYLDPDMLVINPLDDLLRTDISDYILAAASHTG 137 (276)
T ss_dssp --------------------------CHHHHHHHTHHHHSCTTCCEEEEECSSEEECSCSHHHHTCCCTTSSEEEEEC--
T ss_pred --------------------ccccccCHHHHHHHHHHHHcccccCeEEEEeCCeeecCCHHHHhhcCCCCCeEEEEEecc
Confidence 0124678999999999999994 9999999999999999999999999999999999996
Q ss_pred ccccccccccccCCcccccCCCCCCCceeeeeeeeechHHHHhhHHHHHHHHHHhcccccccccCCCCccccccccceee
Q 005035 572 ETFHRFDRYLNFSNPLISKNFDPRACGWAYGMNIFDLDEWRRQNITDVYHTWQKMNHDRQLWKLGTLPPGLITFWKRTYP 651 (717)
Q Consensus 572 ~~f~ry~~YLNfSnP~i~~~fdp~~cyFNSGVLLIDL~kWRe~nITeky~~w~k~N~d~~L~dqGdLp~~Li~F~g~i~~ 651 (717)
... ...+.+ ..++++..|||||||||||+++||+.++++++++|++.+..... .|||+..+.+|.+++++
T Consensus 138 ~~~--~~~~~~------~~~l~~~~~yfNsGV~linl~~~R~~~~~~~~~~~~~~~~~~~~--~~DQd~LN~~f~~~~~~ 207 (276)
T 3tzt_A 138 KTD--MANNVN------RIRLGTDTDYYNSGLLLINLKRAREEIDPDEIFSFVEDNHMNLL--LPDQDILNAMYGDRIYP 207 (276)
T ss_dssp --------------------------CEEEEEEEEEHHHHHHHCCHHHHHHHHHHC----------CHHHHHHHGGGEEE
T ss_pred cch--HHHHHH------HhcCCCCCCeEEeeEEEEEHHHHHhhhHHHHHHHHHHhcccccc--CCChhHHHHHHhCCEEE
Confidence 421 011110 11343445999999999999999999999999999987654332 36677777899999999
Q ss_pred ccC-ccccccCCCCCC-----Cc----ccccCCCeEEEeeCCCCCcccCCccccHHHHHHHhccCcchh
Q 005035 652 LDR-FWHVLGLGYNPS-----VN----QRDIERAAVIHYNGNMKPWLEINIPKYRNYWTKHVDYDQLYL 710 (717)
Q Consensus 652 LD~-rWN~lgLGy~~~-----is----~e~ie~aaIIHYnG~~KPWl~~~~~~Yrd~WwkY~~~d~~fl 710 (717)
||. +||+++ |+... .+ ....++|+||||+|..|||...+.++|+++||+|+++..+++
T Consensus 208 Lp~~~wN~~~-~~~~~~~~~~~~~~~~~~~~~~~~iiHy~g~~KPW~~~~~~~~~~~w~~Y~~~~~~~~ 275 (276)
T 3tzt_A 208 LDDLIYNYDA-RNYSSYLIRSKKQADLAWLMDHTVVLHFCGRDKPWKKNHRNKFTSLYKHYMSLTKRYL 275 (276)
T ss_dssp EEHHHHSEET-TCHHHHHHHTTTCCSHHHHHHHCCEEECCSSCCTTSTTCCSTTHHHHHHHHHHHHHHT
T ss_pred CCchheeeec-ccchhhhccccchhhhhhhccCCeEEEECCCCCCcCCCCCCchHHHHHHHHHHHHHhh
Confidence 998 999986 33210 01 123467999999999999999999999999999999887775
No 2
>1g9r_A Glycosyl transferase; alpha-beta structure; HET: UPF; 2.00A {Neisseria meningitidis} SCOP: c.68.1.4 PDB: 1ga8_A* 1ss9_A*
Probab=100.00 E-value=2.2e-36 Score=312.69 Aligned_cols=237 Identities=19% Similarity=0.227 Sum_probs=172.8
Q ss_pred ccccccc-CCCCCCCCCCCCCCccEEEEEEeCcccHHHHHHHHHhCCCCCceEEEEeecccccccCcchHHHhhcccccc
Q 005035 416 RPLLSVD-MSNSPCCIEPLQHPSNHVFHIVTDRLNYAAMRMWFLANPPGRATVQVQNIEEFTWLNSSYSPVLKQLNSQSM 494 (717)
Q Consensus 416 ~~~i~si-l~ns~~~~e~~kep~~lVFHIVTD~~ny~aMk~WF~~Np~~~A~IeV~nIedf~wln~s~~PVLkqL~s~~i 494 (717)
..+|.|| ++|+ . ..++|||+||+.+-......-..-...+..|+++.++.-. +++.
T Consensus 16 ~vli~Sl~l~~~-------~--~~~~f~il~~~ls~~~~~~L~~~~~~~~~~i~~~~~~~~~---------~~~~----- 72 (311)
T 1g9r_A 16 CVAAKSVEAAHP-------D--TEIRFHVLDAGISEANRAAVAANLRGGGGNIRFIDVNPED---------FAGF----- 72 (311)
T ss_dssp HHHHHHHHHTCT-------T--SCCEEEEEESSCCHHHHHHHHHHSGGGTTTEEEEECCGGG---------GTTS-----
T ss_pred HHHHHHHHHHcC-------C--CCceEEEEECCCCHHHHHHHHHHHHHcCCEEEEEEcCHHH---------HhcC-----
Confidence 4578899 8888 3 3789999999877665443333222235567766554211 0000
Q ss_pred eeEEecccccCCCcccccCCCCCccHhhhHHhhhhhhcCCCCeEEEEecCeeEecCchhhhccCCCCCeeEEeecccccc
Q 005035 495 IDYYFRAHRANSDSNLKFRNPKYLSILNHLRFYLPEVFPRLNKVLFLDDDVVVQKDLSGLWSIDLKGKVNGAVETCGETF 574 (717)
Q Consensus 495 i~~yF~~~~~~sd~~lk~r~p~yiS~lnylRFfIPeLfPelDKVLYLD~DVIVqgDLseLwdiDL~GkviAAVeDc~~~f 574 (717)
. ...+++|..+|+||++|++||+++||||||+|+||++||++||++|++|+++|||+||....
T Consensus 73 ----------~-------~~~~~~s~~~y~Rl~l~~ll~~~~kvlyLD~D~iv~~di~eL~~~~l~~~~~aav~d~~~~~ 135 (311)
T 1g9r_A 73 ----------P-------LNIRHISITTYARLKLGEYIADCDKVLYLDIDVLVRDSLTPLWDTDLGDNWLGASIDLFVER 135 (311)
T ss_dssp ----------C-------CCCTTCCGGGGGGGGHHHHCCSCSCEEEECSSEEECSCCHHHHTCCCTTCSEEEEECHHHHT
T ss_pred ----------c-------cccccCCHHHHHHHHHHHHhhhcCEEEEEcCCeEeccCHHHHhccCCCCcEEEEEeccchhh
Confidence 0 01357889999999999999999999999999999999999999999999999999985321
Q ss_pred -cccccccccCCcccccCCCCCCCceeeeeeeeechHHHHhhHHHHHHHHHHhcccccccccCCCCccccccccceeecc
Q 005035 575 -HRFDRYLNFSNPLISKNFDPRACGWAYGMNIFDLDEWRRQNITDVYHTWQKMNHDRQLWKLGTLPPGLITFWKRTYPLD 653 (717)
Q Consensus 575 -~ry~~YLNfSnP~i~~~fdp~~cyFNSGVLLIDL~kWRe~nITeky~~w~k~N~d~~L~dqGdLp~~Li~F~g~i~~LD 653 (717)
..+... .++.+..|||||||||||+++||+.++++++.+|++.+.....| +||+..+.+|.+++++||
T Consensus 136 ~~~~~~~---------~~~~~~~~yfNsGv~linl~~~r~~~~~~~~~~~~~~~~~~~~~--~DQd~lN~~f~~~~~~Lp 204 (311)
T 1g9r_A 136 QEGYKQK---------IGMADGEYYFNAGVLLINLKKWRRHDIFKMSSEWVEQYKDVMQY--QDQDILNGLFKGGVCYAN 204 (311)
T ss_dssp STTHHHH---------TTCCTTSCCEEEEEEEECHHHHTTSCHHHHHHHHHHHHTTTCSS--HHHHHHHHHHTTSEEEEC
T ss_pred hHHHHHh---------cCCCCCCceEeeeeeeeeHHHHHhcchHHHHHHHHHhccCcCcc--CCcCHHHHHHcCCEEEcC
Confidence 111111 13444578999999999999999999999999999876544333 444455678999999999
Q ss_pred CccccccCCCCC------CC---c-----ccccCCCeEEEeeCCCCCcccCCccccHHHHHHHh
Q 005035 654 RFWHVLGLGYNP------SV---N-----QRDIERAAVIHYNGNMKPWLEINIPKYRNYWTKHV 703 (717)
Q Consensus 654 ~rWN~lgLGy~~------~i---s-----~e~ie~aaIIHYnG~~KPWl~~~~~~Yrd~WwkY~ 703 (717)
.+||++..++.. +. . ....++++||||+|+.|||...+.+.++++|..|.
T Consensus 205 ~~wN~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiHy~g~~KPW~~~~~~~~~~~~~~~~ 268 (311)
T 1g9r_A 205 SRFNFMPTNYAFMANWFASRHTDPLYRDRTNTVMPVAVSHYCGPAKPWHRDCTAWGAERFTELA 268 (311)
T ss_dssp GGGSBCHHHHHTCC----CSCCCHHHHHHHSCCSSCSEEECCSSCCTTSSSCCSTTTHHHHHHH
T ss_pred hhhccCcchhhHHhhhcccccchhhhhHHhhccCCCEEEEeCCcCCCCCCCCCCccHHHHHHHH
Confidence 999998543210 00 0 11234789999999999999988777777776666
No 3
>1ll2_A Glycogenin-1; protein-substrate complex, beta-alpha-beta rossman-like NUCL binding fold, DXD motif, non-proline CIS peptide bond, TRAN; HET: UPG; 1.90A {Oryctolagus cuniculus} SCOP: c.68.1.14 PDB: 1ll3_A 1ll0_A 1zcv_A 1zcu_A 1zdf_A* 1zcy_A 1zdg_A*
Probab=99.87 E-value=1.8e-22 Score=212.48 Aligned_cols=152 Identities=15% Similarity=0.192 Sum_probs=110.2
Q ss_pred cHhhhHHhhhhhhcCCCCeEEEEecCeeEecCchhhhccCCCCCeeEEeecccccccccccccccCCcccccCCCCCCCc
Q 005035 519 SILNHLRFYLPEVFPRLNKVLFLDDDVVVQKDLSGLWSIDLKGKVNGAVETCGETFHRFDRYLNFSNPLISKNFDPRACG 598 (717)
Q Consensus 519 S~lnylRFfIPeLfPelDKVLYLD~DVIVqgDLseLwdiDL~GkviAAVeDc~~~f~ry~~YLNfSnP~i~~~fdp~~cy 598 (717)
+..+|.||++|++ ++++||||||+|+||.+||++||+++ .+|||+|++ + .++
T Consensus 80 ~~~t~~Kl~i~~l-~~ydrvlYLDaD~lv~~di~eLf~~~----~~aAv~d~~--------------------~---~~~ 131 (333)
T 1ll2_A 80 LGVTLTKLHCWSL-TQYSKCVFMDADTLVLANIDDLFERE----ELSAAPDPG--------------------W---PDC 131 (333)
T ss_dssp GHHHHHHGGGGGC-TTCSEEEEECTTEEECSCCGGGGGSC----SSEEEECSS--------------------S---TTS
T ss_pred hHHHHHHHHHhHh-cCCCeEEEEeCCEEeccCHHHHhCCC----ceeEEecCC--------------------C---Ccc
Confidence 3589999999996 78999999999999999999999986 488888752 1 369
Q ss_pred eeeeeeeeechHHHHhhHHHHHHHHHHhcccccccccCCCCccccccccce-----eeccCccccccCC-CCCCCc-ccc
Q 005035 599 WAYGMNIFDLDEWRRQNITDVYHTWQKMNHDRQLWKLGTLPPGLITFWKRT-----YPLDRFWHVLGLG-YNPSVN-QRD 671 (717)
Q Consensus 599 FNSGVLLIDL~kWRe~nITeky~~w~k~N~d~~L~dqGdLp~~Li~F~g~i-----~~LD~rWN~lgLG-y~~~is-~e~ 671 (717)
|||||||||++. ++.+++.+++..+. .+..+||+..+.+|.+.. ..||.+||++..+ |...-. ...
T Consensus 132 fNsGvmlin~~~----~~~~~l~~~~~~~~---~~~~~DQ~~LN~~f~~~~~~~~~~~Lp~~yN~~~~~~~~~~p~~~~~ 204 (333)
T 1ll2_A 132 FNSGVFVYQPSV----ETYNQLLHVASEQG---SFDGGDQGLLNTFFNSWATTDIRKHLPFIYNLSSISIYSYLPAFKAF 204 (333)
T ss_dssp EEEEEEEECCCH----HHHHHHHHHHHHTC---CTTSSHHHHHHHHTTTTTTSCGGGBCCGGGSEETTHHHHTHHHHHHH
T ss_pred eeeeEEEEeCCH----HHHHHHHHHHHhcC---CCCCCCHHHHHHHHHhhcccCccccCCcHHhcccccchhccHHHHhh
Confidence 999999998863 33455556555432 233456655556776533 7899999998542 221000 112
Q ss_pred cCCCeEEEeeCCCCCcccCCc-----------------cccHHHHHHHhcc
Q 005035 672 IERAAVIHYNGNMKPWLEINI-----------------PKYRNYWTKHVDY 705 (717)
Q Consensus 672 ie~aaIIHYnG~~KPWl~~~~-----------------~~Yrd~WwkY~~~ 705 (717)
.++|+||||+|..|||..... ..+.+.||.+++.
T Consensus 205 ~~~~~IiHf~g~~KPW~~~~~~~~~~~~~~~~~~~~~~~~~~~~WW~~~~~ 255 (333)
T 1ll2_A 205 GANAKVVHFLGQTKPWNYTYDTKTKSVRSEGHDPTMTHPQFLNVWWDIFTT 255 (333)
T ss_dssp GGGCSEEECCSSCCGGGSCEETTTTEEC--------CCHHHHHHHHHHHHH
T ss_pred cCCCEEEEECCCCCCCCCCCCCCccccccccccccccHHHHHHHHHHHHHh
Confidence 467999999999999987522 1467899999863
No 4
>3u2u_A Glycogenin-1, GN-1, GN1; structural genomics, structural genomics consortium, SGC, transferase, glycosyltransferase, glycogen biosynthesis; HET: GLC UDP; 1.45A {Homo sapiens} SCOP: c.68.1.14 PDB: 3t7n_A* 3t7o_A* 3t7m_A* 3u2v_A* 3u2x_A* 3u2t_A 3rmv_A* 3rmw_A* 3u2w_A* 3qvb_A* 3q4s_A* 1zct_A* 3v8y_A 3v8z_A* 3usr_A 3v90_A 3v91_A* 3usq_A
Probab=99.80 E-value=1.5e-20 Score=192.99 Aligned_cols=149 Identities=15% Similarity=0.216 Sum_probs=110.3
Q ss_pred HhhhHHhhhhhhcCCCCeEEEEecCeeEecCchhhhccCCCCCeeEEeecccccccccccccccCCcccccCCCCCCCce
Q 005035 520 ILNHLRFYLPEVFPRLNKVLFLDDDVVVQKDLSGLWSIDLKGKVNGAVETCGETFHRFDRYLNFSNPLISKNFDPRACGW 599 (717)
Q Consensus 520 ~lnylRFfIPeLfPelDKVLYLD~DVIVqgDLseLwdiDL~GkviAAVeDc~~~f~ry~~YLNfSnP~i~~~fdp~~cyF 599 (717)
..+|.|++++.+.+ ++||||||+|++|.+||++||+++ .+|||+|.+ . .+||
T Consensus 82 ~~~~~kl~~~~l~~-~~~vlylD~D~~v~~~~~~Lf~~~----~~aA~~d~~--------------------~---~~~f 133 (263)
T 3u2u_A 82 GVTLTKLHCWSLTQ-YSKCVFMDADTLVLANIDDLFDRE----ELSAAPDPG--------------------W---PDCF 133 (263)
T ss_dssp GGGGGGGGGGGCTT-CSEEEEECTTEEECSCCGGGGGSC----SSEEEECTT--------------------S---TTSE
T ss_pred hHHhHHHHhccccC-cceEEEEcCCEeeccCHHHHhCCC----cceEeccCC--------------------C---Cccc
Confidence 36899999999765 999999999999999999999987 478888752 1 2599
Q ss_pred eeeeeeeechHHHHhhHHHHHHHHHHhcccccccccCCCCcccccccc-----ceeeccCccccccC-CCC--CCCcccc
Q 005035 600 AYGMNIFDLDEWRRQNITDVYHTWQKMNHDRQLWKLGTLPPGLITFWK-----RTYPLDRFWHVLGL-GYN--PSVNQRD 671 (717)
Q Consensus 600 NSGVLLIDL~kWRe~nITeky~~w~k~N~d~~L~dqGdLp~~Li~F~g-----~i~~LD~rWN~lgL-Gy~--~~is~e~ 671 (717)
||||||||++ .++.+++.+++..+.. ++.+||...+.+|.+ .+++||.+||++.. .|. +.. ...
T Consensus 134 NsGv~li~p~----~~~~~~l~~~~~~~~~---~~~~DQd~LN~~f~~w~~~~~~~~Lp~~yN~~~~~~y~~~~~~-~~~ 205 (263)
T 3u2u_A 134 NSGVFVYQPS----VETYNQLLHLASEQGS---FDGGDQGILNTFFSSWATTDIRKHLPFIYNLSSISIYSYLPAF-KVF 205 (263)
T ss_dssp EEEEEEECCC----HHHHHHHHHHHHHHCC---TTSSHHHHHHHHTTTTTTSCGGGBCCGGGSEEHHHHHSSHHHH-HHH
T ss_pred cCeEEEEccc----HHHHHHHHHHHHhcCC---CCcccHHHHHHHhccccccCeeEeCCcccccccchhccccHHH-Hhh
Confidence 9999999986 3566667776654432 233455555567776 78899999999742 222 111 112
Q ss_pred cCCCeEEEeeCCCCCcccCCc-----------------cccHHHHHHHhc
Q 005035 672 IERAAVIHYNGNMKPWLEINI-----------------PKYRNYWTKHVD 704 (717)
Q Consensus 672 ie~aaIIHYnG~~KPWl~~~~-----------------~~Yrd~WwkY~~ 704 (717)
.++|+||||+|..|||..... +.+-..||..+.
T Consensus 206 ~~~~~IIHf~g~~KPW~~~~~~~~~~~~~~~~~~~~~~~~~~~~ww~~~~ 255 (263)
T 3u2u_A 206 GASAKVVHFLGRVKPWNYTYDPKTKSVKSEAHDPNMTHPEFLILWWNIFT 255 (263)
T ss_dssp GGGCSEEECCSSSCGGGSEEETTTTEEECCSSCGGGSSTHHHHHHHHHHH
T ss_pred cCCeEEEEECCCCcCCCCCCCCCCCcccccCCCcchhHHHHHHHHHHHHH
Confidence 467999999999999987421 356788998774
No 5
>4ecm_A Glucose-1-phosphate thymidylyltransferase; HET: DAU; 2.30A {Bacillus anthracis} PDB: 3hl3_A*
Probab=25.78 E-value=1.3e+02 Score=29.65 Aligned_cols=23 Identities=9% Similarity=0.166 Sum_probs=20.2
Q ss_pred CCeEEEEecCeeEecCchhhhcc
Q 005035 535 LNKVLFLDDDVVVQKDLSGLWSI 557 (717)
Q Consensus 535 lDKVLYLD~DVIVqgDLseLwdi 557 (717)
-+.++.+.+|+++..|+..+.+.
T Consensus 123 ~~~~lv~~~D~~~~~~l~~l~~~ 145 (269)
T 4ecm_A 123 NDRMVVILGDNIFSDDIRPYVEE 145 (269)
T ss_dssp TSEEEEEETTEEESSCSHHHHHH
T ss_pred CCcEEEEeCCccCccCHHHHHHH
Confidence 47899999999999999998864
No 6
>3umh_A Amyloid beta A4 protein; metal binding site, metal binding, cell surface, secretory P metal binding protein; 2.00A {Homo sapiens} SCOP: a.47.4.1 PDB: 3umi_A 3umk_A 1rw6_A 3nyl_A 3nyj_A 1tkn_A
Probab=25.58 E-value=2.6e+02 Score=28.24 Aligned_cols=46 Identities=17% Similarity=0.307 Sum_probs=32.6
Q ss_pred HHHHHHHHHHHHHhccCC-ccHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 005035 246 NDRLKAMEQSLAKGKQIQ-DDCAAVVKKLRAMLHSTEEQLRVHKKQT 291 (717)
Q Consensus 246 ~~~~~~~~~~~~~~~~~~-~d~~~~~~kl~~~~~~~e~~~~~~~~~~ 291 (717)
.+-|+.-+..-.++|... .|-+++..+..+++.++|++....++|-
T Consensus 39 ~~VmkEW~eae~q~k~l~kadkk~~~~rFQ~~v~aLE~E~~~ErqqL 85 (211)
T 3umh_A 39 SQVMREWEEAERQAKNLPKADKKAVIQHFQEKVESLEQEAANERQQL 85 (211)
T ss_dssp HHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHhhhhHHHHHHH
Confidence 344455555555555443 3567899999999999999999877764
No 7
>3v1a_A Computational design, MID1-APO1; helix-turn-helix, metal binding, homodimer, de novo protein, binding protein; 0.98A {Artificial gene} PDB: 3v1b_A* 3v1c_A* 3v1d_A* 3v1f_A* 3v1e_A
Probab=24.93 E-value=67 Score=25.49 Aligned_cols=37 Identities=14% Similarity=0.254 Sum_probs=33.5
Q ss_pred hhhhHHHHHhhccccccCCchHHHHHHHHHHHHHHHh
Q 005035 195 LKDQLIKAKVYLSLPAMRNNANFVRELRLRIKEVQRA 231 (717)
Q Consensus 195 ~~dq~~~a~~y~~~~~~~~~~~~~~el~~~~~e~~~~ 231 (717)
|+.|+++-+.|+.-|+..+.-.=+.=|..+++|+++-
T Consensus 6 L~EQ~~~I~~~I~qAk~~rRfdEV~~L~~NL~EL~~E 42 (48)
T 3v1a_A 6 LAQQIKNIHSFIHQAKAAGRMDEVRTLQENLHQLMHE 42 (48)
T ss_dssp HHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHH
Confidence 7899999999999999999988888999999999764
No 8
>3pmr_A Amyloid-like protein 1; heparin binding, cell adhesion; 2.11A {Homo sapiens} SCOP: a.47.4.0 PDB: 3q7l_A 3q7g_A 3qmk_A*
Probab=20.89 E-value=4.4e+02 Score=26.69 Aligned_cols=27 Identities=22% Similarity=0.391 Sum_probs=21.5
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 005035 265 DCAAVVKKLRAMLHSTEEQLRVHKKQT 291 (717)
Q Consensus 265 d~~~~~~kl~~~~~~~e~~~~~~~~~~ 291 (717)
|-+++..+..+++.++|++....++|-
T Consensus 66 dkk~m~~rFQ~~v~aLE~E~~~ErqqL 92 (219)
T 3pmr_A 66 DRQALNEHFQSILQTLEEQVSGERQRL 92 (219)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhhhhHHHHHHH
Confidence 346778889999999999988877663
No 9
>4e61_A Protein BIM1; EB1-like motif, coiled-coil, spindle orientation, mitosis, K phosphorylation, mitotic spindle, microtubules, cell cycle; 2.45A {Saccharomyces cerevisiae}
Probab=20.57 E-value=77 Score=28.86 Aligned_cols=39 Identities=21% Similarity=0.296 Sum_probs=28.5
Q ss_pred hHHHHHHHHHHHHHHhccC--------------------CccHHHHHHHHHHHHHHHHH
Q 005035 244 IANDRLKAMEQSLAKGKQI--------------------QDDCAAVVKKLRAMLHSTEE 282 (717)
Q Consensus 244 ~~~~~~~~~~~~~~~~~~~--------------------~~d~~~~~~kl~~~~~~~e~ 282 (717)
+--.|++..|-++-.+... ..+-..+++|+.++|.+|||
T Consensus 43 FYF~KLRdIEiLcQe~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~kIq~ILYaTee 101 (106)
T 4e61_A 43 FYFNKLRDIEILVHTTQDLINEGVYKFNDETITGHGNGNGGALLRFVKKVESILYATAE 101 (106)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTTCCC--------------CHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhhhhccccccchhhcccccccchhHHHHHHHHHHHHhcccc
Confidence 4667788888777766442 12355789999999999997
No 10
>3k66_A Beta-amyloid-like protein; X-RAY amyloid precursor protein, heparin binding, alternative splicing, developmental protein, differentiation; 2.70A {Caenorhabditis elegans} PDB: 3k6b_A*
Probab=19.77 E-value=3.2e+02 Score=28.04 Aligned_cols=76 Identities=14% Similarity=0.248 Sum_probs=45.5
Q ss_pred hhccccccCCchHHHHHHHHHHHHHHHhhcccCCCCCCchhHHHHHHHHHHHHHHhccCC-cc-------HHHHHHHHHH
Q 005035 204 VYLSLPAMRNNANFVRELRLRIKEVQRALGDATKDSDLPRIANDRLKAMEQSLAKGKQIQ-DD-------CAAVVKKLRA 275 (717)
Q Consensus 204 ~y~~~~~~~~~~~~~~el~~~~~e~~~~~~~a~~d~~~~~~~~~~~~~~~~~~~~~~~~~-~d-------~~~~~~kl~~ 275 (717)
+|++.+...+-..=..+-+.++.+-.|- -+.+-|+.-+..-.+++... .| -+++..+..+
T Consensus 4 ~Yf~~~~~~~EH~~f~~Ak~rLe~~hr~------------km~kVMkEW~Eae~q~k~l~kaDpk~Ae~~k~~m~~rFQ~ 71 (239)
T 3k66_A 4 PYFKIANWTNEHDDFKKAEMRMDEKHRK------------KVDKVMKEWGDLETRYNEQKAKDPKGAEKFKSQMNARFQK 71 (239)
T ss_dssp GGGGCSCCTTHHHHHHHHHHHHHHHHHH------------HHHHHHHHHHHHHHHHHHHHHHSHHHHHHHHHHHHHHHHH
T ss_pred cccCCCCCchhHHHHHHHHHHHHHHHHH------------HHHHHHHHHHHHHHHHHhccccCHHHHHHHHHHHHHHHHH
Confidence 6888776665443223444444443321 13344444454444444433 34 3688999999
Q ss_pred HHHHHHHHHHHHHHhh
Q 005035 276 MLHSTEEQLRVHKKQT 291 (717)
Q Consensus 276 ~~~~~e~~~~~~~~~~ 291 (717)
++.++|++....++|-
T Consensus 72 ~v~sLEqE~a~ErqqL 87 (239)
T 3k66_A 72 TVSSLEEEHKRMRKEI 87 (239)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHhhhhHHHHHHH
Confidence 9999999998877664
Done!