Your job contains 1 sequence.
>005036
MDSSSQDEKWVERDFLNLNESGVNSSSPKRQAEEEVEEFQGENVTTNREKRPKLETLNLS
LSLPDVSLSLTASNALQNNVERPMPTRSIQSLAPSRDNTCSNDFTAASLSYSYSHPFSHN
PSCSLTHNSTEYYEYSVGRDDQIWCGGEGTNGSVHSRFRPIGDGSVALNNHGGGGGGGGF
SMIQGSRVMNKDSCNNSLYKTTSSDNLSFFPSELPARPRVETNSGDSRKKDSENLRGLES
MDGGRARKLSRPERILREIVSEAIPIMAQIIQELSDETLESVKEYLKNLFLMSEKREELM
ALKKRLERRSDLSKETLSKCHKDQLAILVAVKMGLGSFLSAKIQLPVNKLVEIFLYMRCR
NVNCQSILPVDDCDCKICSTNKGFCSSCMCPVCLNFDCANNTCSWVGCDVCSHWCHAACG
IQRNLIKPGPSLKGPSGTSEMQFHCIGCGHASEMFGFVKDVFLHCAKDWGLDTFVKELDC
VTKIFKGSNDFKGKELQKKAAELVSKLENKVMSPSEACNFIIRFFNNADSMSDFTASGTS
LNDLIVTQASVQKDAIPIPPATSLPPKYTIYNMTSSSGRRDSMSNDLFKKDLIGDLKVED
EIRFGKLSKNDGFDSLESVVRIKEAEARMFQNKADEARREADEYKRMVCARTEKLEEEYA
HKLSKLCLRETEERRRKKLEELKVLEDSHCDYLKMKRMQAEIAGLLERMEATKQQWV
BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]
Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.
Reference: Gish, W. (1996-2006) http://blast.wustl.edu
Query= 005036
(717 letters)
Database: go_20130330-seqdb.fasta
368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done
Smallest
Sum
High Probability
Sequences producing High-scoring Segment Pairs: Score P(N) N
TAIR|locus:2006837 - symbol:TTA1 "TITANIA 1" species:3702... 1214 3.6e-161 2
TAIR|locus:2087403 - symbol:TTA2 "TITANIA 2" species:3702... 989 1.2e-99 1
UNIPROTKB|Q84N38 - symbol:PVIP "OBERON-like protein" spec... 788 2.3e-78 1
TAIR|locus:2077362 - symbol:OBE1 "OBERON1" species:3702 "... 770 1.9e-76 1
TAIR|locus:2164713 - symbol:OBE2 "OBERON2" species:3702 "... 765 6.3e-76 1
UNIPROTKB|Q84N37 - symbol:PVIP "OBERON-like protein" spec... 755 7.3e-75 1
TAIR|locus:2173004 - symbol:VIN3 "VERNALIZATION INSENSITI... 149 7.0e-07 1
TAIR|locus:2044405 - symbol:VEL2 "AT2G18880" species:3702... 125 0.00022 1
TAIR|locus:2094859 - symbol:VRN5 "AT3G24440" species:3702... 125 0.00027 1
>TAIR|locus:2006837 [details] [associations]
symbol:TTA1 "TITANIA 1" species:3702 "Arabidopsis
thaliana" [GO:0005634 "nucleus" evidence=ISM] [GO:0005515 "protein
binding" evidence=IPI] [GO:0001708 "cell fate specification"
evidence=IGI] [GO:0009880 "embryonic pattern specification"
evidence=IGI] [GO:0090421 "embryonic meristem initiation"
evidence=IGI] PROSITE:PS50016 EMBL:CP002684
GenomeReviews:CT485782_GR GO:GO:0005634 GO:GO:0001708 GO:GO:0046872
PROSITE:PS01359 GO:GO:0009880 EMBL:AC006917 ProtClustDB:CLSN2684317
InterPro:IPR004082 Pfam:PF07227 PIRSF:PIRSF025218 PRINTS:PR01544
EMBL:AY042810 EMBL:AY081688 IPI:IPI00547684 PIR:F86281
RefSeq:NP_563958.1 UniGene:At.24757 UniGene:At.72881
ProteinModelPortal:Q94B71 IntAct:Q94B71 STRING:Q94B71 PRIDE:Q94B71
EnsemblPlants:AT1G14740.1 GeneID:838039 KEGG:ath:AT1G14740
TAIR:At1g14740 eggNOG:NOG259684 HOGENOM:HOG000239893
InParanoid:Q94B71 OMA:YGVTDYS PhylomeDB:Q94B71
Genevestigator:Q94B71 GO:GO:0090421 Uniprot:Q94B71
Length = 733
Score = 1214 (432.4 bits), Expect = 3.6e-161, Sum P(2) = 3.6e-161
Identities = 254/472 (53%), Positives = 326/472 (69%)
Query: 195 NNSLY-KTTSSDNLSFFPSELPARPRVE-TNSGDSRKKDSENLRGLESMDGGRARKLSRP 252
NN + K +SS + SFFPSELPARP E T SGDSRKK + LE D R+
Sbjct: 252 NNPVSGKPSSSADYSFFPSELPARPGNEVTISGDSRKK----VANLEDNDAVRS------ 301
Query: 253 ERILREIVSEAIPIMAQIIQELSDETLESVKEYLKNLFLMSEKREELMALKKRLERRSDL 312
ER+L +IVS++I +A IIQ ++DETLES KEYL+NL EK+E+L+ L+ ++++RSDL
Sbjct: 302 ERVLYDIVSKSISSVALIIQGMADETLESAKEYLRNLIDSPEKKEKLVNLQNQIDKRSDL 361
Query: 313 SKETLSKCHKDQLAILVAVKMGLGSFLSAKIQLPVNKLVEIFLYMRCRNVNCQSILPVDD 372
SKETLSKC KDQL ILVAV+ GL FLS KI++P+N+LVEIFL++RCRNVNC+S+LPVDD
Sbjct: 362 SKETLSKCVKDQLDILVAVRTGLKYFLSGKIRIPMNELVEIFLFLRCRNVNCKSLLPVDD 421
Query: 373 CDCKICSTNKGFCSSCMCPVCLNFDCANNTCSWVGCDVCSHWCHAACGIQRNLIKPGPSL 432
C+CKICS NKGFCSSCMCPVCL FD A+NTCSWVGCDVCSHWCHAACGIQ+NLIKPG SL
Sbjct: 422 CECKICSNNKGFCSSCMCPVCLRFDSASNTCSWVGCDVCSHWCHAACGIQKNLIKPGHSL 481
Query: 433 KGPSGTSEMQFHCIGCGHASEMFGFVKDVFLHCAKDWGLDTFVKELDCVTKIFKGSNDFK 492
KG GT+EM FHCIGC H SEMFGFVKDVF+ CAK+WGL+T +KELDCV K+F+GS+D K
Sbjct: 482 KGQRGTTEMMFHCIGCAHKSEMFGFVKDVFVCCAKNWGLETLIKELDCVRKVFRGSDDAK 541
Query: 493 GKELQKKAAELVSKLENKVMSPSEACNFIIRFFNNADSMSDFTASGTSLNDLIVTQASVQ 552
GK L KA E+V KLE+K +SP +A NFII+FFN A+S+ + L + + S +
Sbjct: 542 GKALHLKANEMVKKLESKQISPLDASNFIIQFFNYAESIPEIPDPPRELT--VAAETSYR 599
Query: 553 KDAIPIPPATSLPPKYTIYNMTSSSGRRDSMSNDLFKKDLIGDLKVEDEIRFGKLSKNDG 612
KD + P+TS K + +T D+M N + + +K E E R + ++
Sbjct: 600 KDEASVTPSTSKDQKKKSFALT------DAMMNSFDSLESMVRIK-EAETRMFQKKADEA 652
Query: 613 FDSLESVVRIKEAEARMFQNKADE--AR---READEYKRMVCARTEKLEEEY 659
ES R+ E + + + E AR +E +E +R +KLE +
Sbjct: 653 RIEAESFKRMIEMKTEKMEEEYTEKLARLCLQETEERRRNKLEELKKLENSH 704
Score = 377 (137.8 bits), Expect = 3.6e-161, Sum P(2) = 3.6e-161
Identities = 91/173 (52%), Positives = 107/173 (61%)
Query: 2 DSSSQDEKWVERDFLNLNESGVNSSSPKRQAXXXXXXFQGENVTTNREKRPKLETXXXXX 61
++SS D+KWVERDF NL E NSS KR+A + E +K K+ET
Sbjct: 98 ENSSYDDKWVERDFFNLREMNPNSS--KRKAHEEEEEAEEEE----DKKSNKIETLNLSL 151
Query: 62 XXXXXXXXXTASNALQNNVERPMPTRSIQSLAPSRDNTC-SNDFTAA--SLSYSYSHPFS 118
TASNA V+RP R + S R T SNDFTA S+SYSYSHPFS
Sbjct: 152 ALPDVSLSLTASNA----VKRP---RVVTS---ERTTTSFSNDFTATAPSMSYSYSHPFS 201
Query: 119 HNPSCSLTHNSTEYYEYSVGRDDQIWCGGEGTNGSVHSRFRPIGDGSVALNNH 171
HN SCS+T NST++ + SVG+DD IWC GEGTNGSVHSRFRPIGDG VAL N+
Sbjct: 202 HNISCSMTRNSTDF-DCSVGKDDHIWCAGEGTNGSVHSRFRPIGDGGVALANN 253
Score = 278 (102.9 bits), Expect = 2.2e-56, Sum P(2) = 2.2e-56
Identities = 60/108 (55%), Positives = 72/108 (66%)
Query: 611 DGFDSLESVVRIKEAEARMFQNKADEARREADEYKRMVCARTEKLEEEYAHKLSXXXXXX 670
+ FDSLES+VRIKEAE RMFQ KADEAR EA+ +KRM+ +TEK+EEEY KL+
Sbjct: 626 NSFDSLESMVRIKEAETRMFQKKADEARIEAESFKRMIEMKTEKMEEEYTEKLARLCLQE 685
Query: 671 XXXXXXXXXXXXXXXXDSHCDYLKMK-RMQAEIAGLLERMEATKQQWV 717
+SHCDY MK RM+AEIAGLL+RME T+QQ V
Sbjct: 686 TEERRRNKLEELKKLENSHCDYRNMKLRMEAEIAGLLKRMEVTRQQLV 733
>TAIR|locus:2087403 [details] [associations]
symbol:TTA2 "TITANIA 2" species:3702 "Arabidopsis
thaliana" [GO:0005634 "nucleus" evidence=ISM] [GO:0005515 "protein
binding" evidence=IPI] [GO:0001708 "cell fate specification"
evidence=IGI] [GO:0009880 "embryonic pattern specification"
evidence=IGI] [GO:0090421 "embryonic meristem initiation"
evidence=IGI] PROSITE:PS50016 GO:GO:0005634 GO:GO:0001708
EMBL:CP002686 GenomeReviews:BA000014_GR GO:GO:0046872 EMBL:AL163818
PROSITE:PS01359 GO:GO:0009880 InterPro:IPR004082 Pfam:PF07227
PRINTS:PR01544 HOGENOM:HOG000239893 GO:GO:0090421 EMBL:BT005768
EMBL:AK228553 IPI:IPI00519092 IPI:IPI01018460 PIR:T49191
RefSeq:NP_191909.1 UniGene:At.24203 UniGene:At.69654
ProteinModelPortal:Q84TI3 STRING:Q84TI3 PaxDb:Q84TI3 PRIDE:Q84TI3
EnsemblPlants:AT3G63500.2 GeneID:825525 KEGG:ath:AT3G63500
TAIR:At3g63500 eggNOG:NOG264321 InParanoid:Q9LY65 OMA:SACMCLV
Genevestigator:Q84TI3 Uniprot:Q84TI3
Length = 1162
Score = 989 (353.2 bits), Expect = 1.2e-99, P = 1.2e-99
Identities = 237/655 (36%), Positives = 356/655 (54%)
Query: 78 NNVERPMPTRSIQSLAPSRDNTCSN-DFTAASLSYSYSHPFSHNPSCSLTHNSTEYYEYS 136
N + P+ + S++SL D C+N D S+S+S S F+HNPSCSL+HN + E S
Sbjct: 517 NQLGSPVRSGSVRSLT---DTFCTNSDGFTMSMSFSGSRSFNHNPSCSLSHNIGDN-EQS 572
Query: 137 V-------GRDDQIWCGGEG--TNGSVHSRFRPIGDGSV---ALNNHXXXXXXXXFSMIQ 184
V G D Q + +V+ R G+GSV A+ + +
Sbjct: 573 VHSRPIFQGIDWQALSHNDSKYNENTVYQRLMENGNGSVQPRAMKGNLISGQADEEHL-- 630
Query: 185 GSRVMNKDS-CNNSLYKTTSSDNLSFFPSELPARPRVETNSGDS-RKKDSENL-RGLES- 240
R+ + S N L K S S P +E S + KK +++ G S
Sbjct: 631 --RLPDGSSKAANILEKQLSFQKSVDVRSACPRTGSLENGSKFTVEKKTAKDFYSGSNSW 688
Query: 241 MDGGRARKLSRPERILREIVSEAIPIMAQIIQELSDETLESVKEYLKNLFLMSEKREELM 300
+ G A E ++R I+S+++P+M + E+ + S+KE ++ + L +K +L
Sbjct: 689 ITGLEAGGHDFVETVIRYILSDSMPVMTKRFHEMPTRNITSLKENIRQMMLNMDKNVQLG 748
Query: 301 ALKKRLERRSDLSKETLSKCHKDQLAILVAVKMGLGSFLSAKIQLPVNKLVEIFLYMRCR 360
A + L+ R+D++ E L+K H+ QL ILVA+K G FL + + L EIF+ MRC+
Sbjct: 749 AFQDALQNRTDITLELLTKSHRAQLEILVALKSGRSDFLLLDNSISSSHLAEIFMNMRCK 808
Query: 361 NVNCQSILPVDDCDCKICSTNKGFCSSCMCPVCLNFDCANNTCSWVGCDVCSHWCHAACG 420
N++C+ +LPVD+CDC++CS GFCS+CMC VC NFD A+NTCSWVGCDVC HWCH CG
Sbjct: 809 NLSCRVLLPVDECDCRVCSRKDGFCSACMCLVCSNFDMASNTCSWVGCDVCLHWCHTDCG 868
Query: 421 IQRNLIKPGPSLKGPSGTSEMQFHCIGCGHASEMFGFVKDVFLHCAKDWGLDTFVKELDC 480
I+ + I+ G + G G +EMQFHC+ C H SEMFGFVK+VFL+ A++W + F KEL+
Sbjct: 869 IKESYIRNGINASGAPGMTEMQFHCVACNHPSEMFGFVKEVFLNFAREWKFERFCKELEY 928
Query: 481 VTKIFKGSNDFKGKELQKKAAELVSKLENKVMSPSEACNFIIRFFNNADSMSDFTASGTS 540
V KIF S D +GK+L++ A +++ L++K++ EACN I+ F ++ DS T + TS
Sbjct: 929 VNKIFSSSKDSRGKQLRQAADAMLASLKSKLIGLPEACNRILGFISDCDSS---TPAETS 985
Query: 541 LNDLIVTQASVQKDAIPIPPATSLPPKYTIYNMTSSSGRRDSMSNDLFKKDLIGDLKVED 600
I Q + + T+ N + R S+++ ++ + VE
Sbjct: 986 A-PFIYEQPKPRHERGSPSQDTAWLRSVCSDNPHNQLKRSASVADAFHRERQVEICAVEM 1044
Query: 601 EIRFGKLSKNDGFDSLESVVRIKEAEARMFQNKADEARREADEYKRMVCARTEKLEEEYA 660
E+ G K F+ LES+VR+K+AEA MFQ +AD+ARREA+ KR+ A+ EK+EEEY
Sbjct: 1045 ELERGS-PKEPRFEELESIVRMKQAEAEMFQGRADDARREAEGLKRIAIAKKEKIEEEYN 1103
Query: 661 HKLSXXXXXXXXXXXXXXXXXXXXXXDSHCDYLKMK-RMQAEIAGLLERMEATKQ 714
++ ++ +MK RM+ E+ GLL +ME TKQ
Sbjct: 1104 RRMGKLSMEDAQERRRRRYEELEAMQRGQREFYEMKMRMEEEMRGLLTKMEMTKQ 1158
>UNIPROTKB|Q84N38 [details] [associations]
symbol:PVIP "OBERON-like protein" species:4100 "Nicotiana
benthamiana" [GO:0046740 "spread of virus in host, cell to cell"
evidence=ISS] InterPro:IPR001965 PROSITE:PS50016 SMART:SM00249
GO:GO:0007275 GO:GO:0005634 GO:GO:0046872 GO:GO:0008270
PROSITE:PS01359 GO:GO:0046740 InterPro:IPR004082 Pfam:PF07227
PIRSF:PIRSF025218 PRINTS:PR01544 EMBL:AY271742
ProteinModelPortal:Q84N38 Uniprot:Q84N38
Length = 549
Score = 788 (282.4 bits), Expect = 2.3e-78, P = 2.3e-78
Identities = 174/484 (35%), Positives = 261/484 (53%)
Query: 188 VMNKDSCN--NSLYKTTSSDNLSFFPSELPARPRVETNSGDS---RKKDSENLRGLESMD 242
+++ D+C N + ++SD PSE A R + D+ +K + E G +
Sbjct: 19 LVSPDACGSPNPQERGSTSDQARDSPSE-SASSRETWPTSDALMLKKLEKEKENGYT--E 75
Query: 243 GGRARKLSRPERI-LREIVSEAIPIMAQIIQELSDETLESVKEYLKNLFLM---SEKREE 298
R +S +++ LR+I E + ++A+ ++ L DE LE K L+ + ++ REE
Sbjct: 76 HSVVRNISNSDKMSLRDIARERVDVIAERMRNLPDEYLEKFKHELRVILEGLGGAQHREE 135
Query: 299 LMALKKRLERRSDLSKETLSKCHKDQLAILVAVKMGLGSFLSAKIQLPVNKLVEIFLYMR 358
+ L++ + R DL+ TL H+ QL ILVA+K G+ +FL + L L++IFLY R
Sbjct: 136 FLFLQRLVNSRGDLTDGTLIITHRTQLEILVAIKTGIQAFLHPSVSLSQASLIDIFLYKR 195
Query: 359 CRNVNCQSILPVDDCDCKICSTNKGFCSSCMCPVCLNFDCANNTCSWVGCDVCSHWCHAA 418
CRN+ C S+LP ++C C+IC+ GFC+ CMC +C FD N+C W+GCD+CSHW H
Sbjct: 196 CRNIACGSMLPAEECSCEICAKKNGFCNLCMCVICYKFDFEVNSCRWIGCDLCSHWTHTD 255
Query: 419 CGIQRNLIKPGPSLKGPSGTSEMQFHCIGCGHASEMFGFVKDVFLHCAKDWGLDTFVKEL 478
C I I GPS+K + ++E F C C SE+ G+VKDVF HCA W + FV+EL
Sbjct: 256 CAISNGQIGTGPSVKNGASSAETLFRCHACSRTSELLGWVKDVFQHCAPSWDAEAFVREL 315
Query: 479 DCVTKIFKGSNDFKGKELQKKAAELVSKLENKVMSPSEACNFIIRFFNNADSMSDFTASG 538
D V +IF+ S D +G++L K EL+ KL+N V P AC I+ FF D +
Sbjct: 316 DYVRRIFQRSEDARGRKLFWKCEELIEKLKNGVADPM-ACKVILSFFQELDVDPSKSQDN 374
Query: 539 TSLNDLIVTQASVQKDAIPIPPATSLPPKYTIYNMTSSSGRRDSMSNDLFKKDLIGDLKV 598
LI + + K A + A M R ++ D ++L +
Sbjct: 375 DEGGRLIAPEEAFNKIADVVQEAIRKMEAVAEEKMRMVKKAR--LALDACDQELKDKARE 432
Query: 599 EDEIRFGKLSKNDGFDSLESVVRIKEAEARMFQNKADEARREADEYKRMVCARTEKLEEE 658
++ + K D LES+VR+K+AEA MF KA EARREA+ +R+ A+TEK EE+
Sbjct: 433 VTSLKMERQRKKQQIDELESIVRLKQAEADMFDLKAGEARREAERLQRIALAKTEKSEED 492
Query: 659 YAHK 662
YA +
Sbjct: 493 YASR 496
>TAIR|locus:2077362 [details] [associations]
symbol:OBE1 "OBERON1" species:3702 "Arabidopsis thaliana"
[GO:0005634 "nucleus" evidence=ISM;IDA] [GO:0008270 "zinc ion
binding" evidence=IEA] [GO:0046740 "spread of virus in host, cell
to cell" evidence=IMP] [GO:0009793 "embryo development ending in
seed dormancy" evidence=IGI] [GO:0010071 "root meristem
specification" evidence=IGI] [GO:0010078 "maintenance of root
meristem identity" evidence=IGI] [GO:0010492 "maintenance of shoot
apical meristem identity" evidence=IGI] [GO:0042803 "protein
homodimerization activity" evidence=TAS] [GO:0046982 "protein
heterodimerization activity" evidence=TAS] [GO:0005515 "protein
binding" evidence=IPI] [GO:0010468 "regulation of gene expression"
evidence=IGI] [GO:0080022 "primary root development" evidence=IGI]
[GO:0031347 "regulation of defense response" evidence=IMP]
[GO:0009536 "plastid" evidence=IDA] InterPro:IPR001965
PROSITE:PS50016 SMART:SM00249 GO:GO:0005634 GO:GO:0009536
EMBL:CP002686 GenomeReviews:BA000014_GR GO:GO:0042803 GO:GO:0046872
GO:GO:0008270 GO:GO:0046982 PROSITE:PS01359 GO:GO:0080022
EMBL:AC013483 GO:GO:0010492 GO:GO:0010468 EMBL:AC009176
GO:GO:0010071 GO:GO:0031347 GO:GO:0010078 GO:GO:0046740
EMBL:DQ059085 EMBL:AY045899 EMBL:AY113947 IPI:IPI00522384
RefSeq:NP_566320.1 UniGene:At.25420 ProteinModelPortal:Q9S736
SMR:Q9S736 IntAct:Q9S736 STRING:Q9S736 PaxDb:Q9S736 PRIDE:Q9S736
EnsemblPlants:AT3G07780.1 GeneID:819969 KEGG:ath:AT3G07780
TAIR:At3g07780 eggNOG:NOG325001 HOGENOM:HOG000029805
InParanoid:Q9S736 OMA:ECEREVE PhylomeDB:Q9S736
ProtClustDB:CLSN2684317 Genevestigator:Q9S736 InterPro:IPR004082
Pfam:PF07227 PIRSF:PIRSF025218 PRINTS:PR01544 Uniprot:Q9S736
Length = 566
Score = 770 (276.1 bits), Expect = 1.9e-76, P = 1.9e-76
Identities = 165/436 (37%), Positives = 251/436 (57%)
Query: 228 RKKDSENLRGLESMDGGRARKLSRPERI-LREIVSEAIPIMAQIIQELSDETLESVKEYL 286
RK DS G +S D R +S +++ LR+I E + I+A+ + L +E LE +K L
Sbjct: 64 RKTDSGKT-GPDSHDQHVIRHVSIADKVSLRDIARERLDIVAERMHRLPEEYLEELKNGL 122
Query: 287 KNLFLMSEKR--EELMALKKRLERRSDLSKETLSKCHKDQLAILVAVKMGLGSFLSAKIQ 344
K + + + +E M L+K ++ RSDL+ +TL + H+ QL +LV + G+ +FL I
Sbjct: 123 KAILEGNGAQPIDEFMFLQKFVQTRSDLTSKTLVRAHRVQLEVLVVINTGIQAFLHPNIN 182
Query: 345 LPVNKLVEIFLYMRCRNVNCQSILPVDDCDCKICSTNKGFCSSCMCPVCLNFDCANNTCS 404
L + L+EIF+Y RCRN+ CQ+ LP D C C+IC+ KGFC+ CMC +C FD A NTC
Sbjct: 183 LSQSSLIEIFVYKRCRNIACQNELPADGCPCEICANRKGFCNLCMCVICNKFDFAVNTCR 242
Query: 405 WVGCDVCSHWCHAACGIQRNLIKPGPSLKGPSGTSEMQFHCIGCGHASEMFGFVKDVFLH 464
W+GCDVCSHW H C I+ I G S K SG EM F C C H SE+ G+VKDVF H
Sbjct: 243 WIGCDVCSHWTHTDCAIRDGEISMGVSPKSVSGMGEMLFKCRACNHTSELLGWVKDVFQH 302
Query: 465 CAKDWGLDTFVKELDCVTKIFKGSNDFKGKELQKKAAELVSKLENKVMSPSEACNFIIRF 524
CA +W ++ +KELD V++IF+GS D +G++L K EL+ K++ ++ + A I+ F
Sbjct: 303 CAPNWDRESLMKELDFVSRIFRGSEDTRGRKLFWKCEELMEKIKGG-LAEATAAKLILMF 361
Query: 525 FNNADSMSDFTASGTSLNDLIVTQASVQKDAIPIPPATSLPPKYTIYNMTSSSGRRDSMS 584
F + S + I Q + + A + +L + + ++ M
Sbjct: 362 FQEIELDSPKSLESGEGGGTIAPQDACNRIAEVVKE--TLRKMEIVGEEKTRMYKKARMG 419
Query: 585 NDLFKKDLIGDLKVEDEIRFGKLSKNDGFDSLESVVRIKEAEARMFQNKADEARREADEY 644
+ ++++ K E++ + K + +E +VR+K+AEA MFQ KA+EA+ EA+
Sbjct: 420 LEECEREVEEKAKQVAELQMERQKKKQQIEEVERIVRLKQAEAEMFQLKANEAKVEAERL 479
Query: 645 KRMVCARTEKLEEEYA 660
+R+V A+ EK EEEYA
Sbjct: 480 ERIVKAKKEKTEEEYA 495
>TAIR|locus:2164713 [details] [associations]
symbol:OBE2 "OBERON2" species:3702 "Arabidopsis thaliana"
[GO:0005634 "nucleus" evidence=ISM;IDA] [GO:0008270 "zinc ion
binding" evidence=IEA] [GO:0046740 "spread of virus in host, cell
to cell" evidence=IMP] [GO:0009793 "embryo development ending in
seed dormancy" evidence=IGI] [GO:0010071 "root meristem
specification" evidence=IGI] [GO:0010078 "maintenance of root
meristem identity" evidence=IGI] [GO:0010492 "maintenance of shoot
apical meristem identity" evidence=IGI] [GO:0042803 "protein
homodimerization activity" evidence=TAS] [GO:0046982 "protein
heterodimerization activity" evidence=TAS] [GO:0005515 "protein
binding" evidence=IPI] [GO:0010468 "regulation of gene expression"
evidence=IGI] [GO:0080022 "primary root development" evidence=IGI]
InterPro:IPR001965 PROSITE:PS50016 SMART:SM00249 GO:GO:0005634
EMBL:CP002688 GenomeReviews:BA000015_GR GO:GO:0042803 GO:GO:0046872
GO:GO:0008270 GO:GO:0046982 PROSITE:PS01359 GO:GO:0080022
GO:GO:0010492 GO:GO:0010468 GO:GO:0010071 GO:GO:0010078
EMBL:AB023039 GO:GO:0046740 HOGENOM:HOG000029805
ProtClustDB:CLSN2684317 InterPro:IPR004082 Pfam:PF07227
PIRSF:PIRSF025218 PRINTS:PR01544 EMBL:AK317346 EMBL:AK317672
EMBL:AK220595 EMBL:AK227275 IPI:IPI00541622 RefSeq:NP_001032031.1
RefSeq:NP_199627.1 UniGene:At.28240 ProteinModelPortal:Q9LUB7
SMR:Q9LUB7 STRING:Q9LUB7 PaxDb:Q9LUB7 PRIDE:Q9LUB7
EnsemblPlants:AT5G48160.1 EnsemblPlants:AT5G48160.2 GeneID:834868
KEGG:ath:AT5G48160 TAIR:At5g48160 eggNOG:NOG302251
InParanoid:Q9LUB7 OMA:ANEARQE PhylomeDB:Q9LUB7
Genevestigator:Q9LUB7 Uniprot:Q9LUB7
Length = 574
Score = 765 (274.4 bits), Expect = 6.3e-76, P = 6.3e-76
Identities = 159/416 (38%), Positives = 244/416 (58%)
Query: 249 LSRPERI-LREIVSEAIPIMAQIIQELSDETLESVKEYLKNLFL--MSEKREELMALKKR 305
+S +++ +R+I E + ++A+ + L DE L+ +K LK++ +++ +E M L+K
Sbjct: 85 VSNADKVSVRDIARERVELVAERMHRLPDEFLDELKNGLKSILEGNVAQSVDEFMFLQKV 144
Query: 306 LERRSDLSKETLSKCHKDQLAILVAVKMGLGSFLSAKIQLPVNKLVEIFLYMRCRNVNCQ 365
++ R+DLS TL + H+ QL ILVA+ G+ +FL I L L+EIF+Y RCRN+ CQ
Sbjct: 145 VQSRTDLSSVTLVRAHRVQLEILVAINTGIQAFLHPNISLSQPSLIEIFVYKRCRNIACQ 204
Query: 366 SILPVDDCDCKICSTNKGFCSSCMCPVCLNFDCANNTCSWVGCDVCSHWCHAACGIQRNL 425
+ LP DDC C IC+ KGFC+ CMC +C FD + NTC W+GCD+CSHW H C I+
Sbjct: 205 NQLPADDCYCDICTNRKGFCNLCMCTICNKFDFSVNTCRWIGCDLCSHWTHTDCAIRDGQ 264
Query: 426 IKPGPSLKG-PSGTSEMQFHCIGCGHASEMFGFVKDVFLHCAKDWGLDTFVKELDCVTKI 484
I G S K SG E+ F C C SE+ G+VKDVF HCA +W ++ +KELD V++I
Sbjct: 265 ITTGSSAKNNTSGPGEIVFKCRACNRTSELLGWVKDVFQHCAPNWDRESLMKELDFVSRI 324
Query: 485 FKGSNDFKGKELQKKAAELVSKLENKVMSPSEACNFIIRFFNNADSMSDFTASGTSLNDL 544
F+GS D +G++L K EL+ K++ ++ + A I+ FF +S S + L
Sbjct: 325 FRGSEDQRGRKLFWKCEELIDKIKGG-LAEATAAKLILMFFQEIESDSAKSFENGEGGRL 383
Query: 545 IVTQASVQKDAIPIPPATSLPPKYTIYNMTSSSGRRDSMSNDLFKKDLIGDLKVEDEIRF 604
+ Q + + A + +L + ++ M+ + ++L K E++
Sbjct: 384 MAPQDACNRIAEVVQE--TLRKMEIVAEEKMRMFKKARMALETCDRELEDKAKEVSELKA 441
Query: 605 GKLSKNDGFDSLESVVRIKEAEARMFQNKADEARREADEYKRMVCARTEKLEEEYA 660
+ K D LE +VR+K+AEA MFQ KA+EA+READ +R+V A+ +K EEEYA
Sbjct: 442 ERQKKKLQIDELERIVRLKQAEADMFQLKANEAKREADRLQRIVLAKMDKSEEEYA 497
>UNIPROTKB|Q84N37 [details] [associations]
symbol:PVIP "OBERON-like protein" species:3888 "Pisum
sativum" [GO:0046740 "spread of virus in host, cell to cell"
evidence=ISS] PROSITE:PS50016 GO:GO:0007275 GO:GO:0005634
GO:GO:0046872 PROSITE:PS01359 GO:GO:0046740 InterPro:IPR004082
Pfam:PF07227 PIRSF:PIRSF025218 PRINTS:PR01544 EMBL:AY271743
Uniprot:Q84N37
Length = 513
Score = 755 (270.8 bits), Expect = 7.3e-75, P = 7.3e-75
Identities = 166/439 (37%), Positives = 236/439 (53%)
Query: 229 KKDSENLRGLESMDGGRARKLSRPERI-LREIVSEAIPIMAQIIQELSDETLESVKEYLK 287
KK ++ D R++S +RI L++I E + ++ + L DE L+ +K L+
Sbjct: 9 KKMENGKAAIDFPDQSVIRRVSSADRISLQDIARERVDVICDRMHRLPDEFLDELKNGLR 68
Query: 288 NLFLM---SEKREELMALKKRLERRSDLSKETLSKCHKDQLAILVAVKMGLGSFLSAKIQ 344
+ S+ R+E L+K ++ RSDL+ +TL + H+ QL ILV++ G+ FL I
Sbjct: 69 AILEGGNGSQHRDEFFILQKLVQSRSDLTAKTLIRAHRVQLEILVSINTGIQGFLHPSIS 128
Query: 345 LPVNKLVEIFLYMRCRNVNCQSILPVDDCDCKICSTNKGFCSSCMCPVCLNFDCANNTCS 404
L L+EIFLY RCRN+ CQ+ LP D+C C+ N GFC+ CMC +C FD NTC
Sbjct: 129 LSQTSLIEIFLYKRCRNIACQNQLPADECSXDTCTNNNGFCNLCMCVICSKFDFEVNTCR 188
Query: 405 WVGCDVCSHWCHAACGIQRNLIKPGPSLKGPSGTSEMQFHCIGCGHASEMFGFVKDVFLH 464
W+GCD+ SHW H C I+ LI GPS+K SG SEM F C C S + G+VKDVF H
Sbjct: 189 WIGCDLXSHWTHTDCAIREQLICMGPSVKSGSGPSEMVFRCQACSXTSXLLGWVKDVFQH 248
Query: 465 CAKDWGLDTFVKELDCVTKIFKGSNDFKGKELQKKAAELVSKLENKVMSPSEACNFIIRF 524
CA W D ++ELD V++IF GS D +G L K +L KL+++ M AC I+
Sbjct: 249 CAPSWDGDALIRELDFVSRIFHGSKDQRGMNLFWKCDDLKEKLKSRKMDSKAACRAILMV 308
Query: 525 FNNADSMSDFTASGTSLNDLIVTQASVQKDAIPIPPATSLPPKYTIYNMTSSSGRR---D 581
F D + + LI Q + + A + A M R +
Sbjct: 309 FQELDLDNSKSLENAESGRLIAPQEACNRIAEVVQEAIRKMEFVADEKMRMFKKARIAVE 368
Query: 582 SMSNDLFKKDL-IGDLKVEDEIRFGKLSKNDGFDSLESVVRIKEAEARMFQNKADEARRE 640
+ +L K GDLKVE + K + LE +VR+K AEA MFQ KA+EA+RE
Sbjct: 369 ACDRELADKAREAGDLKVERQ------KKKSQIEELERIVRLKNAEADMFQLKANEAKRE 422
Query: 641 ADEYKRMVCARTEKLEEEY 659
A+ +R+ A+++K EEEY
Sbjct: 423 AERLQRIALAKSDKSEEEY 441
>TAIR|locus:2173004 [details] [associations]
symbol:VIN3 "VERNALIZATION INSENSITIVE 3" species:3702
"Arabidopsis thaliana" [GO:0005634 "nucleus" evidence=ISM]
[GO:0008270 "zinc ion binding" evidence=IEA] [GO:0009409 "response
to cold" evidence=IEP] [GO:0010048 "vernalization response"
evidence=IEP] [GO:0001666 "response to hypoxia" evidence=IMP]
[GO:0005515 "protein binding" evidence=IPI] InterPro:IPR001965
InterPro:IPR003961 Pfam:PF00041 PROSITE:PS50016 PROSITE:PS50853
SMART:SM00060 SMART:SM00249 GO:GO:0005634 EMBL:CP002688
GenomeReviews:BA000015_GR Gene3D:2.60.40.10 InterPro:IPR013783
GO:GO:0006355 GO:GO:0046872 GO:GO:0003677 SUPFAM:SSF49265
GO:GO:0008270 GO:GO:0001666 GO:GO:0006351 PROSITE:PS01359
GO:GO:0010048 EMBL:AB016891 InterPro:IPR004082 Pfam:PF07227
EMBL:AY446960 IPI:IPI00545823 RefSeq:NP_200548.2 UniGene:At.22442
UniGene:At.66759 ProteinModelPortal:Q9FIE3 SMR:Q9FIE3
DIP:DIP-48611N IntAct:Q9FIE3 STRING:Q9FIE3
EnsemblPlants:AT5G57380.1 GeneID:835844 KEGG:ath:AT5G57380
TAIR:At5g57380 eggNOG:NOG263359 HOGENOM:HOG000238791 OMA:CCENLAC
PhylomeDB:Q9FIE3 ProtClustDB:CLSN2925621 Genevestigator:Q9FIE3
Uniprot:Q9FIE3
Length = 620
Score = 149 (57.5 bits), Expect = 7.0e-07, P = 7.0e-07
Identities = 63/254 (24%), Positives = 107/254 (42%)
Query: 275 SDETLESVKEYLKNLFLMSEKREELMALKKRLERRSDLSKETLSKCHKDQLAILVAVKMG 334
S E E ++ N+ +SE+RE + AL + E S+L L+ ++++ ++ +MG
Sbjct: 25 SFEDNECIETCKPNVLNVSERRELIHALSNQPEEASEL----LNSWSRNEIMKIICAEMG 80
Query: 335 -----LG----SFLSAKIQLPVNKLVEIFLYMR--CRNVNCQSILPVDDCDCKICSTNKG 383
G + + L L E R R + I + C+ C G
Sbjct: 81 KERKYTGLNKPKLIENLLNLVSRPLGETSCSDRRNSRKKEKKMIGYIICCENLACRAALG 140
Query: 384 ----FCSSCMCPVCLNFDCANNTCSWVGCDVCSHWCHAACGIQRNLIKPGPSLKGPSGTS 439
FC C C +C FD + W+ CD C CH CG++++ G S
Sbjct: 141 CDDTFCRRCSCCICQKFDDNKDPSLWLTCDACGSSCHLECGLKQDRYGIG------SDDL 194
Query: 440 EMQFHCIGCGHASEMFG-FVKDVFLHCAKDWG-LDTFVKELDCVTKIFKGSNDFKGKELQ 497
+ +F+C CG +++ G + K V + AK+ +D L K+ +G+ ++ L
Sbjct: 195 DGRFYCAYCGKDNDLLGCWRKQVKV--AKETRRVDVLCYRLSLGQKLLRGTTKYRN--LL 250
Query: 498 KKAAELVSKLENKV 511
+ E V KLE V
Sbjct: 251 ELMDEAVKKLEGDV 264
>TAIR|locus:2044405 [details] [associations]
symbol:VEL2 "AT2G18880" species:3702 "Arabidopsis
thaliana" [GO:0003674 "molecular_function" evidence=ND] [GO:0005634
"nucleus" evidence=ISM] [GO:0008150 "biological_process"
evidence=ND] InterPro:IPR003961 Pfam:PF00041 PROSITE:PS50853
SMART:SM00060 Gene3D:2.60.40.10 InterPro:IPR013783 EMBL:CP002685
HOGENOM:HOG000238791 EMBL:AY924744 IPI:IPI00549070
RefSeq:NP_179478.4 UniGene:At.39929 ProteinModelPortal:Q5BPT4
EnsemblPlants:AT2G18880.1 GeneID:816404 KEGG:ath:AT2G18880
TAIR:At2g18880 OMA:CNEIREL PhylomeDB:Q5BPT4 ProtClustDB:CLSN2927364
Genevestigator:Q5BPT4 Uniprot:Q5BPT4
Length = 529
Score = 125 (49.1 bits), Expect = 0.00022, P = 0.00022
Identities = 69/333 (20%), Positives = 137/333 (41%)
Query: 269 QIIQELSDETLESVKEYLKNLFLMSEKREELMALKKRLERRSDLSKETLSKCHKDQLAIL 328
Q++ +LS E+ KE LK+ + +E RE L A K+ + + L+K+ + +L +
Sbjct: 25 QLVLKLSKESEREFKEVLKD-WSCNEIRELLRAESKKDIKYTGLTKDEIIT----RLFNI 79
Query: 329 VAVKMGLGSFLSAKIQLPVNK---LVEIFLYMRCRN-VNCQSILPVDDCDCKICSTNKGF 384
V+ K + I P + LV + + + CQ++ C K+ F
Sbjct: 80 VSKKNTRDHEVEEIIPSPKRQKRDLVTPLAKAKGKGKMYCQNLA----CQNKL-REEATF 134
Query: 385 CSSCMCPVCLNFDCANNTCSWVGCDVCSHWCHAACGIQRNLI------KPGPSLKGPSGT 438
C C C +C +D + W+ C+ S + +CG+ +L K G PS
Sbjct: 135 CKRCSCCICFKYDDNKDPSLWLTCNSDSQFDGESCGLSCHLNCAFDSEKSGLKEDTPSSD 194
Query: 439 SEMQFHCIGCGHASEMFGFVKDVFLHCAKDWGLDTFVKELDCVTKIFKGSNDF--KGKEL 496
+ F+C+ CG + +K + ++ + F + K+ KG+ + +E+
Sbjct: 195 IDGCFNCVSCGKTNSKIECLKKQLIIANEERRVGVFCYRILLAHKLLKGTKKYIIVSEEV 254
Query: 497 QKKAAELVSKLENKVMS-PSEACNFIIRFFNNADSMSDFTASGTSLNDLIVTQASVQKDA 555
+K L ++ + PS+ ++ A+ + +S +L +L D
Sbjct: 255 EKAVMHLKNEFGVPISCLPSKMSRGLVNRLCCAEKVKKHCSS--ALKEL---------DG 303
Query: 556 IPIPPATSLPPKYTIYNMTSSSGRRDSMSNDLF 588
+P+P K I ++ ++S D + + F
Sbjct: 304 LPLPSTIQGSMKIRIESVLATSVTFDIEAEESF 336
>TAIR|locus:2094859 [details] [associations]
symbol:VRN5 "AT3G24440" species:3702 "Arabidopsis
thaliana" [GO:0003674 "molecular_function" evidence=ND] [GO:0005634
"nucleus" evidence=ISM] [GO:0009909 "regulation of flower
development" evidence=IGI;RCA] [GO:0010048 "vernalization response"
evidence=IMP] [GO:0016568 "chromatin modification" evidence=IMP]
[GO:0016571 "histone methylation" evidence=RCA;IMP] [GO:0006306
"DNA methylation" evidence=RCA] [GO:0006342 "chromatin silencing"
evidence=RCA] [GO:0009640 "photomorphogenesis" evidence=RCA]
[GO:0009793 "embryo development ending in seed dormancy"
evidence=RCA] [GO:0009845 "seed germination" evidence=RCA]
[GO:0009933 "meristem structural organization" evidence=RCA]
[GO:0010162 "seed dormancy process" evidence=RCA] [GO:0010182
"sugar mediated signaling pathway" evidence=RCA] [GO:0010228
"vegetative to reproductive phase transition of meristem"
evidence=RCA] [GO:0010388 "cullin deneddylation" evidence=RCA]
[GO:0016567 "protein ubiquitination" evidence=RCA] [GO:0016572
"histone phosphorylation" evidence=RCA] [GO:0016579 "protein
deubiquitination" evidence=RCA] [GO:0019915 "lipid storage"
evidence=RCA] [GO:0031047 "gene silencing by RNA" evidence=RCA]
[GO:0045893 "positive regulation of transcription, DNA-dependent"
evidence=RCA] [GO:0050826 "response to freezing" evidence=RCA]
[GO:0051567 "histone H3-K9 methylation" evidence=RCA]
InterPro:IPR003961 Pfam:PF00041 PROSITE:PS50853 SMART:SM00060
EMBL:CP002686 GenomeReviews:BA000014_GR Gene3D:2.60.40.10
InterPro:IPR013783 SUPFAM:SSF49265 GO:GO:0010048 GO:GO:0009909
GO:GO:0016571 EMBL:AP002048 InterPro:IPR004082 Pfam:PF07227
HOGENOM:HOG000238791 EMBL:EF064791 IPI:IPI00536359
RefSeq:NP_189087.1 UniGene:At.37527 ProteinModelPortal:Q9LHF5
SMR:Q9LHF5 DIP:DIP-48608N STRING:Q9LHF5 EnsemblPlants:AT3G24440.1
GeneID:822034 KEGG:ath:AT3G24440 TAIR:At3g24440 eggNOG:NOG319546
InParanoid:Q9LHF5 OMA:DEIEDSC PhylomeDB:Q9LHF5
ProtClustDB:CLSN2684509 Genevestigator:Q9LHF5 Uniprot:Q9LHF5
Length = 602
Score = 125 (49.1 bits), Expect = 0.00027, P = 0.00027
Identities = 42/161 (26%), Positives = 65/161 (40%)
Query: 359 CRNVNCQSILPVDDCDCKICSTNKGFCSSCMCPVCLNFDCANNTCSWVGC------DV-- 410
C+N +C++ +P +D FC C C VC NFD + W+ C DV
Sbjct: 49 CKNASCRANVPKED----------SFCKRCSCCVCHNFDENKDPSLWLVCEPEKSDDVEF 98
Query: 411 CSHWCHAACGIQRNLIKPGPSLKGPSGTSEMQFHCIGCGHASEMFGFVKDVFLHCAKDWG 470
C CH C + +K G G + F C CG S++ G K + +
Sbjct: 99 CGLSCHIECAFRE--VKVGVIALGNLMKLDGCFCCYSCGKVSQILGCWKKQLVAAKEARR 156
Query: 471 LDTFVKELDCVTKIFKGSNDFKGKELQKKAAELVSKLENKV 511
D +D ++ G++ F EL + S LE++V
Sbjct: 157 RDGLCYRIDLGYRLLNGTSRFS--ELHEIVRAAKSMLEDEV 195
Parameters:
V=100
filter=SEG
E=0.001
ctxfactor=1.00
Query ----- As Used ----- ----- Computed ----
Frame MatID Matrix name Lambda K H Lambda K H
+0 0 BLOSUM62 0.316 0.130 0.386 same same same
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
Query
Frame MatID Length Eff.Length E S W T X E2 S2
+0 0 717 667 0.00098 120 3 11 22 0.41 34
36 0.45 37
Statistics:
Database: /share/blast/go-seqdb.fasta
Title: go_20130330-seqdb.fasta
Posted: 5:47:42 AM PDT Apr 1, 2013
Created: 5:47:42 AM PDT Apr 1, 2013
Format: XDF-1
# of letters in database: 169,044,731
# of sequences in database: 368,745
# of database sequences satisfying E: 9
No. of states in DFA: 625 (66 KB)
Total size of DFA: 361 KB (2178 KB)
Time to generate neighborhood: 0.00u 0.00s 0.00t Elapsed: 00:00:00
No. of threads or processors used: 24
Search cpu time: 66.98u 0.09s 67.07t Elapsed: 00:00:05
Total cpu time: 66.98u 0.09s 67.07t Elapsed: 00:00:05
Start: Sat May 11 02:32:53 2013 End: Sat May 11 02:32:58 2013