BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 005036
(717 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3OLH|A Chain A, Human 3-Mercaptopyruvate Sulfurtransferase
Length = 302
Score = 33.9 bits (76), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 26/87 (29%), Positives = 38/87 (43%), Gaps = 19/87 (21%)
Query: 274 LSDETLESVKEYLKNLFLMSEKREELMALKKRLERRSDLSKETLSKCHKDQLAILVAVKM 333
LS E LE E +++LF E++ DLSK ++ C A VA
Sbjct: 230 LSQEGLEKSPEEIRHLFQ---------------EKKVDLSKPLVATCGSGVTACHVA--- 271
Query: 334 GLGSFLSAKIQLPVNKLVEIFLYMRCR 360
LG++L K +P+ + YMR R
Sbjct: 272 -LGAYLCGKPDVPIYDGSWVEWYMRAR 297
>pdb|1D0Q|A Chain A, Structure Of The Zinc-Binding Domain Of Bacillus
Stearothermophilus Dna Primase
pdb|1D0Q|B Chain B, Structure Of The Zinc-Binding Domain Of Bacillus
Stearothermophilus Dna Primase
Length = 103
Score = 32.3 bits (72), Expect = 0.91, Method: Composition-based stats.
Identities = 18/45 (40%), Positives = 22/45 (48%), Gaps = 8/45 (17%)
Query: 443 FHCIGCGHASEMFGFVKDV----FLHCAK----DWGLDTFVKELD 479
FHC GCG F F+ D+ F+ AK G+D V ELD
Sbjct: 59 FHCFGCGAGGNAFTFLMDIEGIPFVEAAKRLAAKAGVDLSVYELD 103
>pdb|3N9L|A Chain A, Cekdm7a From C.Elegans, Complex With H3k4me3 Peptide And
Nog
pdb|3N9M|A Chain A, Cekdm7a From C.Elegans, Alone
pdb|3N9M|C Chain C, Cekdm7a From C.Elegans, Alone
pdb|3N9N|A Chain A, Cekdm7a From C.Elegans, Complex With H3k4me3k9me2 Peptide
And Nog
pdb|3N9O|A Chain A, Cekdm7a From C.Elegans, Complex With H3k4me3 Peptide,
H3k9me2 Peptide And Nog
pdb|3N9P|A Chain A, Cekdm7a From C.Elegans, Complex With H3k4me3k27me2 Peptide
And Nog
pdb|3N9Q|A Chain A, Cekdm7a From C.Elegans, Complex With H3k4me3 Peptide,
H3k27me2 Peptide And Nog
pdb|3PUQ|A Chain A, Cekdm7a From C.Elegans, Complex With Alpha-Kg
pdb|3PUQ|C Chain C, Cekdm7a From C.Elegans, Complex With Alpha-Kg
pdb|3PUR|A Chain A, Cekdm7a From C.Elegans, Complex With D-2-Hg
pdb|3PUR|C Chain C, Cekdm7a From C.Elegans, Complex With D-2-Hg
Length = 528
Score = 30.8 bits (68), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 9/19 (47%), Positives = 10/19 (52%)
Query: 401 NTCSWVGCDVCSHWCHAAC 419
N W+GCD C W H C
Sbjct: 54 NDFQWIGCDSCQTWYHFLC 72
>pdb|2RDP|A Chain A, The Structure Of A Marr Family Protein From Bacillus
Stearothermophilus
Length = 150
Score = 29.6 bits (65), Expect = 5.6, Method: Composition-based stats.
Identities = 19/71 (26%), Positives = 35/71 (49%), Gaps = 6/71 (8%)
Query: 219 RVETNSGDSRKKDSENLRGLESMDGGRARKLSRPERILREIVSEAIPIMAQIIQELSDET 278
R E N +R +D + R + R R L + ERI+ E++ + +A +++ SDE
Sbjct: 79 RXERNGLVARVRDEHDRRVV------RIRLLEKGERIIEEVIEKRQRDLANVLESFSDEE 132
Query: 279 LESVKEYLKNL 289
+ + L+ L
Sbjct: 133 IVVFERCLRKL 143
>pdb|3OGK|B Chain B, Structure Of Coi1-Ask1 In Complex With Coronatine And An
Incomplete Jaz1 Degron
pdb|3OGK|D Chain D, Structure Of Coi1-Ask1 In Complex With Coronatine And An
Incomplete Jaz1 Degron
pdb|3OGK|F Chain F, Structure Of Coi1-Ask1 In Complex With Coronatine And An
Incomplete Jaz1 Degron
pdb|3OGK|H Chain H, Structure Of Coi1-Ask1 In Complex With Coronatine And An
Incomplete Jaz1 Degron
pdb|3OGK|J Chain J, Structure Of Coi1-Ask1 In Complex With Coronatine And An
Incomplete Jaz1 Degron
pdb|3OGK|L Chain L, Structure Of Coi1-Ask1 In Complex With Coronatine And An
Incomplete Jaz1 Degron
pdb|3OGK|N Chain N, Structure Of Coi1-Ask1 In Complex With Coronatine And An
Incomplete Jaz1 Degron
pdb|3OGK|P Chain P, Structure Of Coi1-Ask1 In Complex With Coronatine And An
Incomplete Jaz1 Degron
pdb|3OGL|B Chain B, Structure Of Coi1-Ask1 In Complex With Ja-Isoleucine And
The Jaz1 Degron
pdb|3OGL|D Chain D, Structure Of Coi1-Ask1 In Complex With Ja-Isoleucine And
The Jaz1 Degron
pdb|3OGL|F Chain F, Structure Of Coi1-Ask1 In Complex With Ja-Isoleucine And
The Jaz1 Degron
pdb|3OGL|H Chain H, Structure Of Coi1-Ask1 In Complex With Ja-Isoleucine And
The Jaz1 Degron
pdb|3OGL|J Chain J, Structure Of Coi1-Ask1 In Complex With Ja-Isoleucine And
The Jaz1 Degron
pdb|3OGL|L Chain L, Structure Of Coi1-Ask1 In Complex With Ja-Isoleucine And
The Jaz1 Degron
pdb|3OGL|N Chain N, Structure Of Coi1-Ask1 In Complex With Ja-Isoleucine And
The Jaz1 Degron
pdb|3OGL|P Chain P, Structure Of Coi1-Ask1 In Complex With Ja-Isoleucine And
The Jaz1 Degron
pdb|3OGM|B Chain B, Structure Of Coi1-Ask1 In Complex With Coronatine And The
Jaz1 Degron
pdb|3OGM|D Chain D, Structure Of Coi1-Ask1 In Complex With Coronatine And The
Jaz1 Degron
pdb|3OGM|F Chain F, Structure Of Coi1-Ask1 In Complex With Coronatine And The
Jaz1 Degron
pdb|3OGM|H Chain H, Structure Of Coi1-Ask1 In Complex With Coronatine And The
Jaz1 Degron
pdb|3OGM|J Chain J, Structure Of Coi1-Ask1 In Complex With Coronatine And The
Jaz1 Degron
pdb|3OGM|L Chain L, Structure Of Coi1-Ask1 In Complex With Coronatine And The
Jaz1 Degron
pdb|3OGM|N Chain N, Structure Of Coi1-Ask1 In Complex With Coronatine And The
Jaz1 Degron
pdb|3OGM|P Chain P, Structure Of Coi1-Ask1 In Complex With Coronatine And The
Jaz1 Degron
Length = 592
Score = 29.6 bits (65), Expect = 6.5, Method: Compositional matrix adjust.
Identities = 21/76 (27%), Positives = 36/76 (47%), Gaps = 19/76 (25%)
Query: 217 RPRVETNSGDSRKKDSENL---RGLESMDGGRARKLSRPERILREIVSEAIPIMAQIIQE 273
R R+E + + +D E L RGL ++ G + + MA + +
Sbjct: 346 RLRIERGADEQGMEDEEGLVSQRGLIALAQG----------------CQELEYMAVYVSD 389
Query: 274 LSDETLESVKEYLKNL 289
+++E+LES+ YLKNL
Sbjct: 390 ITNESLESIGTYLKNL 405
>pdb|3B5X|A Chain A, Crystal Structure Of Msba From Vibrio Cholerae
pdb|3B5X|B Chain B, Crystal Structure Of Msba From Vibrio Cholerae
Length = 582
Score = 28.9 bits (63), Expect = 9.8, Method: Compositional matrix adjust.
Identities = 35/167 (20%), Positives = 76/167 (45%), Gaps = 15/167 (8%)
Query: 147 GEGTNGSVHSRFRPIGDGSVALNNHXXXXXXXXFSMIQGSRVMNKDSCNNSLYKTTSSDN 206
G+ T ++ +RF + GS+ L+ H + + R S N L+ T ++N
Sbjct: 381 GKSTIANLFTRFYDVDSGSICLDGH----DVRDYKLTNLRRHFALVSQNVHLFNDTIANN 436
Query: 207 LSFFPSELPARPRVETNSGDSRKKD-SENL-RGLESMDGGRARKLSRPER----ILREIV 260
+++ R ++E + + + EN+ +GL+++ G LS +R I R ++
Sbjct: 437 IAYAAEGEYTREQIEQAARQAHAMEFIENMPQGLDTVIGENGTSLSGGQRQRVAIARALL 496
Query: 261 SEA-IPIMAQIIQELSDETLESVKEYLKNLFLMSEKREELMALKKRL 306
+A + I+ + L E+ +++ L L +K + ++ + RL
Sbjct: 497 RDAPVLILDEATSALDTESERAIQAALDEL----QKNKTVLVIAHRL 539
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.316 0.130 0.386
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 18,834,961
Number of Sequences: 62578
Number of extensions: 735886
Number of successful extensions: 1763
Number of sequences better than 100.0: 14
Number of HSP's better than 100.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 13
Number of HSP's that attempted gapping in prelim test: 1761
Number of HSP's gapped (non-prelim): 15
length of query: 717
length of database: 14,973,337
effective HSP length: 106
effective length of query: 611
effective length of database: 8,340,069
effective search space: 5095782159
effective search space used: 5095782159
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 55 (25.8 bits)