BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 005037
(717 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|4HG6|A Chain A, Structure Of A Cellulose Synthase - Cellulose
Translocation Intermediate
Length = 802
Score = 51.6 bits (122), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 68/289 (23%), Positives = 107/289 (37%), Gaps = 66/289 (22%)
Query: 250 LVYLAREKRPWHFQNFKAGAMNALIRVSSKISNGQVILNVDCDMYSNNSQVVRDALCFFI 309
+VY RE+ ++ KAG M+A + + G++++ D D + + R + +F+
Sbjct: 214 VVYSTRERN----EHAKAGNMSAAL----ERLKGELVVVFDADHVPSRDFLAR-TVGYFV 264
Query: 310 DEEKGHEVAFVQFPQNFDNVTKNELYSNSSRIFNEVEL----QGLDGYGCPLYTGSGCFH 365
++ V F N D + +N + NE+ +GLD +G + GS
Sbjct: 265 EDPDLFLVQTPHFFINPDPIQRNLALGDRCPPENEMFYGKIHRGLDRWGGAFFCGSAAVL 324
Query: 366 RREILCGSKYNKETKIEWKSKKDSKGEESLLDLEETSKALASCTYERNTQWGKEMGLKYG 425
RR L D G G
Sbjct: 325 RRRAL-----------------DEAG-----------------------------GFAGE 338
Query: 426 CPAEDVVTGLSIQSRGWKSVYSKPERDAFLGVSPTTLLQLLVQHKRWSEGNFQIFISKYC 485
ED T L I SRGWKS+Y +R G+ P T + Q RW+ G Q+ + K
Sbjct: 339 TITEDAETALEIHSRGWKSLYI--DRAMIAGLQPETFASFIQQRGRWATGMMQMLLLK-N 395
Query: 486 PAWHAHGKISLGFRLGYC-CYGLWAPSCLATLFYSVVPSLYLLKGIPLF 533
P + + + RL Y W L + + V P +YL GI +F
Sbjct: 396 PLFRR--GLGIAQRLCYLNSMSFWF-FPLVRMMFLVAPLIYLFFGIEIF 441
>pdb|1N1S|A Chain A, Trypanosoma Rangeli Sialidase
pdb|1N1T|A Chain A, Trypanosoma Rangeli Sialidase In Complex With Dana At 1.6
A
pdb|1N1V|A Chain A, Trypanosoma Rangeli Sialidase In Complex With Dana
pdb|1N1Y|A Chain A, Trypanosoma Rangeli Sialidase In Complex With Sialic Acid
Length = 641
Score = 34.3 bits (77), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 23/61 (37%), Positives = 31/61 (50%), Gaps = 2/61 (3%)
Query: 369 ILCGSKYNKETKIEWKSKKDSKGEESLLDLEETSKALASCTYERNTQWGKEMGLKYGCPA 428
IL GS +NK T+ W +D E LL + E +K+ A+ WGK + LK PA
Sbjct: 112 ILVGS-FNK-TRNSWTQHRDGSDWEPLLVVGEVTKSAANGKTTATISWGKPVSLKPLFPA 169
Query: 429 E 429
E
Sbjct: 170 E 170
>pdb|1MZ5|A Chain A, Trypanosoma Rangeli Sialidase
pdb|1MZ6|A Chain A, Trypanosoma Rangeli Sialidase In Complex With The
Inhibitor Dana
Length = 638
Score = 34.3 bits (77), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 23/61 (37%), Positives = 31/61 (50%), Gaps = 2/61 (3%)
Query: 369 ILCGSKYNKETKIEWKSKKDSKGEESLLDLEETSKALASCTYERNTQWGKEMGLKYGCPA 428
IL GS +NK T+ W +D E LL + E +K+ A+ WGK + LK PA
Sbjct: 109 ILVGS-FNK-TRNSWTQHRDGSDWEPLLVVGEVTKSAANGKTTATISWGKPVSLKPLFPA 166
Query: 429 E 429
E
Sbjct: 167 E 167
>pdb|2A75|A Chain A, Trypanosoma Rangeli Sialidase In Complex With 2,3-
Difluorosialic Acid (Covalent Intermediate)
pdb|2AGS|A Chain A, Trypanosoma Rangeli Sialidase In Complex With 2-Keto-3-
Deoxy-D-Glycero-D-Galacto-2,3-Difluoro-Nononic Acid
(2,3- Difluoro-Kdn)
pdb|2FHR|A Chain A, Trypanosoma Rangeli Sialidase In Complex With 2,3-
Difluorosialic Acid (Covalent Intermediate)
Length = 652
Score = 34.3 bits (77), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 23/61 (37%), Positives = 31/61 (50%), Gaps = 2/61 (3%)
Query: 369 ILCGSKYNKETKIEWKSKKDSKGEESLLDLEETSKALASCTYERNTQWGKEMGLKYGCPA 428
IL GS +NK T+ W +D E LL + E +K+ A+ WGK + LK PA
Sbjct: 123 ILVGS-FNK-TRNSWTQHRDGSDWEPLLVVGEVTKSAANGKTTATISWGKPVSLKPLFPA 180
Query: 429 E 429
E
Sbjct: 181 E 181
>pdb|1WCS|A Chain A, A Mutant Of Trypanosoma Rangeli Sialidase Displaying
Trans- Sialidase Activity
Length = 641
Score = 33.5 bits (75), Expect = 0.45, Method: Compositional matrix adjust.
Identities = 23/61 (37%), Positives = 31/61 (50%), Gaps = 2/61 (3%)
Query: 369 ILCGSKYNKETKIEWKSKKDSKGEESLLDLEETSKALASCTYERNTQWGKEMGLKYGCPA 428
IL GS +NK T+ W +D E LL + E +K+ A+ WGK + LK PA
Sbjct: 112 ILVGS-FNK-TRNYWTQHRDGSDWEPLLVVGEVTKSAANGKTTATISWGKPVSLKPLFPA 169
Query: 429 E 429
E
Sbjct: 170 E 170
>pdb|3EC3|A Chain A, Crystal Structure Of The Bb Fragment Of Erp72
pdb|3EC3|B Chain B, Crystal Structure Of The Bb Fragment Of Erp72
Length = 250
Score = 32.0 bits (71), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 21/61 (34%), Positives = 30/61 (49%), Gaps = 5/61 (8%)
Query: 557 VEFLWCGGTALGWWNDQRLWLYKRTSSYLFAFID-----TILKTLGFSESAFVVTAKVAD 611
V+F + TA +W ++ L + K Y FA D T +K LG SES V A + D
Sbjct: 142 VDFSFDYRTATQFWRNKVLEVAKDFPEYTFAIADEEDYATEVKDLGLSESGGDVNAAILD 201
Query: 612 Q 612
+
Sbjct: 202 E 202
>pdb|1MS5|A Chain A, Triclinic Form Of Trypanosoma Cruzi Trans-Sialidase,
Soaked With N-Acetylneuraminyl-A-2,3-Thio-Galactoside
(Na-S-Gal)
pdb|1MS5|B Chain B, Triclinic Form Of Trypanosoma Cruzi Trans-Sialidase,
Soaked With N-Acetylneuraminyl-A-2,3-Thio-Galactoside
(Na-S-Gal)
Length = 648
Score = 30.4 bits (67), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 20/61 (32%), Positives = 32/61 (52%), Gaps = 2/61 (3%)
Query: 369 ILCGSKYNKETKIEWKSKKDSKGEESLLDLEETSKALASCTYERNTQWGKEMGLKYGCPA 428
+L GS YN ++ W S D++ + LL + E +K+ A + +WG + LK PA
Sbjct: 122 VLVGS-YN-SSRSYWTSHGDARDWDILLAVGEVTKSTAGGKITASIKWGSPVSLKEFFPA 179
Query: 429 E 429
E
Sbjct: 180 E 180
>pdb|1S0I|A Chain A, Trypanosoma Cruzi Trans-Sialidase In Complex With Sialyl-
Lactose (Michaelis Complex)
pdb|1S0J|A Chain A, Trypanosoma Cruzi Trans-Sialidase In Complex With Munana
(Michaelis Complex)
Length = 648
Score = 30.4 bits (67), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 20/61 (32%), Positives = 32/61 (52%), Gaps = 2/61 (3%)
Query: 369 ILCGSKYNKETKIEWKSKKDSKGEESLLDLEETSKALASCTYERNTQWGKEMGLKYGCPA 428
+L GS YN ++ W S D++ + LL + E +K+ A + +WG + LK PA
Sbjct: 122 VLVGS-YN-SSRSYWTSHGDARDWDILLAVGEVTKSTAGGKITASIKWGSPVSLKEFFPA 179
Query: 429 E 429
E
Sbjct: 180 E 180
>pdb|1MR5|A Chain A, Orthorhombic Form Of Trypanosoma Cruzi Trans-Sialidase
pdb|1MS0|A Chain A, Monoclinic Form Of Trypanosoma Cruzi Trans-Sialidase, In
Complex With 3-Deoxy-2,3-Dehydro-N-Acetylneuraminic Acid
(Dana)and Lactose
pdb|1MS0|B Chain B, Monoclinic Form Of Trypanosoma Cruzi Trans-Sialidase, In
Complex With 3-Deoxy-2,3-Dehydro-N-Acetylneuraminic Acid
(Dana)and Lactose
pdb|1MS1|A Chain A, Monoclinic Form Of Trypanosoma Cruzi Trans-sialidase, In
Complex With 3-deoxy-2,3-dehydro-n-acetylneuraminic Acid
(dana)
pdb|1MS1|B Chain B, Monoclinic Form Of Trypanosoma Cruzi Trans-sialidase, In
Complex With 3-deoxy-2,3-dehydro-n-acetylneuraminic Acid
(dana)
pdb|1MS3|A Chain A, Monoclinic Form Of Trypanosoma Cruzi Trans-Sialidase
pdb|1MS3|B Chain B, Monoclinic Form Of Trypanosoma Cruzi Trans-Sialidase
pdb|1MS4|A Chain A, Triclinic Form Of Trypanosoma Cruzi Trans-Sialidase
pdb|1MS4|B Chain B, Triclinic Form Of Trypanosoma Cruzi Trans-Sialidase
pdb|1MS8|A Chain A, Triclinic Form Of Trypanosoma Cruzi Trans-Sialidase, In
Complex With 3-Deoxy-2,3-Dehydro-N-Acetylneuraminic Acid
(Dana)
pdb|1MS8|B Chain B, Triclinic Form Of Trypanosoma Cruzi Trans-Sialidase, In
Complex With 3-Deoxy-2,3-Dehydro-N-Acetylneuraminic Acid
(Dana)
pdb|1MS9|A Chain A, Triclinic Form Of Trypanosoma Cruzi Trans-Sialidase, In
Complex With Lactose
pdb|1MS9|B Chain B, Triclinic Form Of Trypanosoma Cruzi Trans-Sialidase, In
Complex With Lactose
pdb|2AH2|A Chain A, Trypanosoma Cruzi Trans-Sialidase In Complex With
2,3-Difluorosialic Acid (Covalent Intermediate)
pdb|3B69|A Chain A, T Cruzi Trans-Sialidase Complex With Benzoylated Nana
Derivative
pdb|3OPZ|A Chain A, Crystal Structure Of Trans-Sialidase In Complex With The
Fab Fragment Of A Neutralizing Monoclonal Igg Antibody
pdb|3OPZ|B Chain B, Crystal Structure Of Trans-Sialidase In Complex With The
Fab Fragment Of A Neutralizing Monoclonal Igg Antibody
pdb|3OPZ|C Chain C, Crystal Structure Of Trans-Sialidase In Complex With The
Fab Fragment Of A Neutralizing Monoclonal Igg Antibody
Length = 648
Score = 30.4 bits (67), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 20/61 (32%), Positives = 32/61 (52%), Gaps = 2/61 (3%)
Query: 369 ILCGSKYNKETKIEWKSKKDSKGEESLLDLEETSKALASCTYERNTQWGKEMGLKYGCPA 428
+L GS YN ++ W S D++ + LL + E +K+ A + +WG + LK PA
Sbjct: 122 VLVGS-YN-SSRSYWTSHGDARDWDILLAVGEVTKSTAGGKITASIKWGSPVSLKEFFPA 179
Query: 429 E 429
E
Sbjct: 180 E 180
>pdb|3PJQ|A Chain A, Trypanosoma Cruzi Trans-Sialidase-Like Inactive Isoform
(Including The Natural Mutation Tyr342his) In Complex
With Lactose
Length = 648
Score = 30.4 bits (67), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 20/61 (32%), Positives = 32/61 (52%), Gaps = 2/61 (3%)
Query: 369 ILCGSKYNKETKIEWKSKKDSKGEESLLDLEETSKALASCTYERNTQWGKEMGLKYGCPA 428
+L GS YN ++ W S D++ + LL + E +K+ A + +WG + LK PA
Sbjct: 122 VLVGS-YN-SSRSYWTSHGDARDWDILLAVGEVTKSTAGGKITASIKWGSPVSLKEFFPA 179
Query: 429 E 429
E
Sbjct: 180 E 180
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.323 0.139 0.442
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 20,943,949
Number of Sequences: 62578
Number of extensions: 871412
Number of successful extensions: 1746
Number of sequences better than 100.0: 10
Number of HSP's better than 100.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 1734
Number of HSP's gapped (non-prelim): 11
length of query: 717
length of database: 14,973,337
effective HSP length: 106
effective length of query: 611
effective length of database: 8,340,069
effective search space: 5095782159
effective search space used: 5095782159
T: 11
A: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 55 (25.8 bits)