Query 005037
Match_columns 717
No_of_seqs 414 out of 2013
Neff 6.7
Searched_HMMs 29240
Date Mon Mar 25 13:27:56 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/005037.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/005037hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4hg6_A Cellulose synthase subu 100.0 2.9E-53 9.9E-58 506.9 52.3 501 20-695 64-581 (802)
2 3bcv_A Putative glycosyltransf 99.8 1.6E-19 5.3E-24 182.8 14.8 197 97-449 3-219 (240)
3 1xhb_A Polypeptide N-acetylgal 99.8 4.3E-19 1.5E-23 199.2 19.2 245 94-487 24-300 (472)
4 1qg8_A Protein (spore coat pol 99.8 1.1E-19 3.8E-24 185.8 9.3 225 99-474 1-234 (255)
5 2d7i_A Polypeptide N-acetylgal 99.8 3.4E-19 1.2E-23 205.3 13.4 245 94-487 107-378 (570)
6 2z86_A Chondroitin synthase; G 99.8 1.6E-18 5.5E-23 201.1 17.6 215 97-462 91-335 (625)
7 2ffu_A Ppgalnact-2, polypeptid 99.8 7.7E-19 2.6E-23 198.9 14.4 242 94-488 61-333 (501)
8 2z86_A Chondroitin synthase; G 99.7 2.3E-17 7.8E-22 191.4 12.7 222 97-480 373-598 (625)
9 3ckj_A Putative uncharacterize 99.7 4.8E-16 1.6E-20 166.7 15.0 124 96-324 45-170 (329)
10 4fix_A UDP-galactofuranosyl tr 99.6 1.3E-15 4.3E-20 178.0 14.0 229 97-472 178-438 (657)
11 3l7i_A Teichoic acid biosynthe 99.6 1.2E-16 4.1E-21 189.1 0.0 195 98-449 1-199 (729)
12 2fy7_A Beta-1,4-galactosyltran 99.5 4.7E-14 1.6E-18 148.9 8.5 138 265-480 112-263 (287)
13 3f1y_A Mannosyl-3-phosphoglyce 99.5 5.4E-13 1.9E-17 146.5 17.0 122 97-322 92-216 (387)
14 2nxv_A ATP synthase subunits r 99.2 2.1E-11 7.2E-16 125.4 7.1 51 266-321 62-113 (249)
15 2bo4_A Mannosylglycerate synth 98.9 4.8E-08 1.6E-12 107.4 18.1 43 263-310 73-120 (397)
16 2wvl_A Mannosyl-3-phosphoglyce 98.2 3.7E-06 1.3E-10 89.6 10.1 44 97-149 51-94 (391)
17 1fo8_A Alpha-1,3-mannosyl-glyc 98.1 6.1E-06 2.1E-10 88.8 10.5 48 98-150 1-48 (343)
18 2zu9_A Mannosyl-3-phosphoglyce 98.1 9.1E-06 3.1E-10 88.5 10.6 42 263-307 142-183 (394)
19 3lw6_A FI08434P, beta-4-galact 92.9 0.29 9.9E-06 50.6 8.8 141 264-480 97-250 (287)
20 2j0a_A Beta-1,3-N-acetylglucos 53.0 24 0.00081 36.2 7.0 37 281-319 92-128 (280)
21 3oam_A 3-deoxy-manno-octuloson 38.4 1.5E+02 0.0052 29.1 10.2 45 264-311 74-119 (252)
22 3tqd_A 3-deoxy-manno-octuloson 34.6 1.8E+02 0.0063 28.9 10.2 45 264-310 81-125 (256)
23 3q80_A 2-C-methyl-D-erythritol 32.3 87 0.003 30.8 7.1 45 266-310 83-127 (231)
24 3d5n_A Q97W15_sulso; NESG, SSR 30.4 1E+02 0.0035 29.0 7.2 41 264-308 71-112 (197)
25 2c0n_A A197; thermophil protei 27.0 47 0.0016 32.4 3.8 38 267-305 38-78 (203)
26 2xwl_A 2-C-methyl-D-erythritol 24.5 1.4E+02 0.0048 28.2 7.0 40 265-308 78-118 (223)
27 2y6p_A 3-deoxy-manno-octuloson 20.1 1.1E+02 0.0037 29.3 5.1 42 264-311 72-114 (234)
No 1
>4hg6_A Cellulose synthase subunit A; membrane translocation, cellulose synthesis, UDP-GLC binding membrane, transferase; HET: BGC UDP LDA; 3.25A {Rhodobacter sphaeroides}
Probab=100.00 E-value=2.9e-53 Score=506.86 Aligned_cols=501 Identities=22% Similarity=0.305 Sum_probs=375.8
Q ss_pred hHHHHHHHH-HHHHHHHHHHHhc-ccCCCCCcchhHHHHHHHHHHHHHHHHHHHHHhhhcceecccccccccccccccCC
Q 005037 20 FYRVFVVSV-FVCIFFIWVYRLC-HIPNKHENGKLLWVWIGLFAAELWLGFYWIFTQSLRWNRVRRLTFRDRLSQRYEDK 97 (717)
Q Consensus 20 ~~r~~~~~~-~~~~~~~~~~R~~-~l~~~~~~~~~~~~~~~~~~~E~~~~~~~~l~~~~~~~p~~r~~~~~~l~~~~~~~ 97 (717)
..|++.++. +++.+.|++||++ +++..+... +.+++++++++|+++.+.|++..+..++|..|.+.++. .+++
T Consensus 64 ~~~~~~~~~~~~~~~~y~~wr~~~tl~~~~~~~-~~~~~~~ll~~~~~~~~~~l~~~~~~~~~~~r~~~~~~----~~~~ 138 (802)
T 4hg6_A 64 VPRFLLLSAASMLVMRYWFWRLFETLPPPALDA-SFLFALLLFAVETFSISIFFLNGFLSADPTDRPFPRPL----QPEE 138 (802)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTSCCCSSCH-HHHHHHHHHHHHHHHHHHHHHHHHHTTSCCCCCCCCCC----CTTT
T ss_pred chHHHHHHHHHHHHHHHHHHHhheecCCccchH-HHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCCCCCC----CccC
Confidence 345555444 4445679999998 565443222 45678889999999999999999999999998776643 2466
Q ss_pred CCceEEEEecCCCCCCChHHHHHHHHHHHcCCCCCCCeEEEEEeCCCChhhHHH----HHHhhcccccchhhhhhcCCCC
Q 005037 98 LPGVDIFVCTADPKIEPPMMVINTVLSVMAYDYPTDKLSVYLSDDASSDLTFYA----LMEASHFSTHWIPYCKKFNVEP 173 (717)
Q Consensus 98 ~P~VdV~I~t~n~~~Ep~~~v~~Tv~s~la~dYP~~kl~v~V~DDg~sd~T~~~----l~ea~~fa~~w~pfc~~~~v~~ 173 (717)
.|+|+|+||||| |+++++++|+.|++++|||.++++|+|+||||+|.|.+. +.|
T Consensus 139 ~P~VSViIPtyN---e~~~lL~~~L~Sl~~q~yp~~~~eIiVVDDgStD~T~~~~d~~i~~------------------- 196 (802)
T 4hg6_A 139 LPTVDILVPSYN---EPADMLSVTLAAAKNMIYPARLRTVVLCDDGGTDQRCMSPDPELAQ------------------- 196 (802)
T ss_dssp CCCEEEEEECTT---CCHHHHHHHHHHHHTSSCCTTCCEEEEESTTCHHHHHTCSSHHHHH-------------------
T ss_pred CCcEEEEEEECC---CCHHHHHHHHHHHHhccCCCCcEEEEEEECCCCccccccCCHHHHH-------------------
Confidence 899999999999 887888999999999999999999999999999998531 110
Q ss_pred CCchhhhhHHHHHHHHHHHHHhhhcccchHHHHHhhcCcccccCCCCCCCCccceeeeecCCCCCccccccCCCCeEEEE
Q 005037 174 RSPAAYFINRLYEEMENRIQTATKLGRITEEIRMKHKGFSQWDSYSSPLDHDTILQILIDGRDPNAVDNERCALPTLVYL 253 (717)
Q Consensus 174 r~p~~yf~~~~ye~~~~ri~~~~~~~~~~~~~~~~~~g~~~w~~~~~~~~h~~iv~v~~~~~~~~~~d~~g~~~P~l~yv 253 (717)
++++....+++.. +. .++.|+
T Consensus 197 ----------~~~~~~~~l~~~~-----------~~--------------------------------------~~v~~i 217 (802)
T 4hg6_A 197 ----------KAQERRRELQQLC-----------RE--------------------------------------LGVVYS 217 (802)
T ss_dssp ----------HHHHHHHHHHHHH-----------HH--------------------------------------HTCEEE
T ss_pred ----------HHHhhhHHHHHHH-----------Hh--------------------------------------cCcEEE
Confidence 0111111111110 00 016788
Q ss_pred eeccCCCCCCCChHHHHHHHHHhcccCCCccEEEEEcCCCCCCchHHHHHHHHHhh-ccCCCCeEEEEeccceeccCCcc
Q 005037 254 AREKRPWHFQNFKAGAMNALIRVSSKISNGQVILNVDCDMYSNNSQVVRDALCFFI-DEEKGHEVAFVQFPQNFDNVTKN 332 (717)
Q Consensus 254 ~Rekrp~~~~~~KAGALN~al~~s~~~t~gd~Il~lDAD~~~~~p~~L~~~v~~f~-d~~~~~~vg~VQ~Pq~f~n~~~~ 332 (717)
.|+++ +++|++|+|.+++. +++|||+++|||++++ ||+|++++.+|. || ++++||+++.+.|.+..
T Consensus 218 ~~~~~----~~GKa~alN~gl~~----a~gd~Il~lDaD~~~~-pd~L~~lv~~~~~dp----~v~~V~~~~~~~~~~~~ 284 (802)
T 4hg6_A 218 TRERN----EHAKAGNMSAALER----LKGELVVVFDADHVPS-RDFLARTVGYFVEDP----DLFLVQTPHFFINPDPI 284 (802)
T ss_dssp ECSSC----CSHHHHHHHHHHHH----CCCSEEEECCTTEEEC-TTHHHHHHHHHHHSS----SCCEEECCCCBSSCCHH
T ss_pred EecCC----CCcchHHHHHHHHh----cCCCEEEEECCCCCcC-hHHHHHHHHHHhcCC----CeEEEeccEEEeCCchH
Confidence 88764 57999999999998 6999999999999997 999999999995 55 79999999999886521
Q ss_pred -------hhhhhhHHHHHHHHHhhhhccCCcccccccceEehhhhccCCCCchhhHhhhccCCCccchhhhhHHHhhhhc
Q 005037 333 -------ELYSNSSRIFNEVELQGLDGYGCPLYTGSGCFHRREILCGSKYNKETKIEWKSKKDSKGEESLLDLEETSKAL 405 (717)
Q Consensus 333 -------d~~~~~~~~f~~~~~~g~d~~~~~~~~Gtg~~~RR~aL~~~~~~~~~~~~~~~~igg~~~~~~~~~~~~~~~v 405 (717)
..+.+....++.....+.+.+++++++|+++++||+++++ +|
T Consensus 285 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~Rr~al~~--------------vG----------------- 333 (802)
T 4hg6_A 285 QRNLALGDRCPPENEMFYGKIHRGLDRWGGAFFCGSAAVLRRRALDE--------------AG----------------- 333 (802)
T ss_dssp HHHHTCCTTSCCTTHHHHHTHHHHHHHTTCCCCCSSSEEEEHHHHHH--------------HT-----------------
T ss_pred hhhhhHHhhhhHHHHHHHHHHHhhHhhcCCceecccchhhhHHHHHH--------------cC-----------------
Confidence 1123345677888889999999999999999999999998 55
Q ss_pred ccccccccCCcCcccccCCCCCcchHHHHHHHHhcCCeEEEeCCCCccccccCCcCHHHHHHHHHHHhcchHHHHHhhhc
Q 005037 406 ASCTYERNTQWGKEMGLKYGCPAEDVVTGLSIQSRGWKSVYSKPERDAFLGVSPTTLLQLLVQHKRWSEGNFQIFISKYC 485 (717)
Q Consensus 406 ~~c~Ye~~t~wG~~~G~~~~svtED~~t~~rl~~~Gwrsvy~~~~~~a~~g~aP~tl~~~~~Qr~RWa~G~lqil~~~~~ 485 (717)
||++++++||.+++++++++||+++|+++. ..++.+|+|++++++||.||++|.+|+++. ++
T Consensus 334 ---------------gf~~~~~~ED~~l~~rl~~~G~ri~~~~~~--~~~~~~p~t~~~~~~Qr~RW~~G~~q~l~~-~~ 395 (802)
T 4hg6_A 334 ---------------GFAGETITEDAETALEIHSRGWKSLYIDRA--MIAGLQPETFASFIQQRGRWATGMMQMLLL-KN 395 (802)
T ss_dssp ---------------TCCCSSSSHHHHHHHHHHTTTCCEEECCCC--CEEECCCCSHHHHHHHHHHHHHHHHHHHHH-SC
T ss_pred ---------------CcCCCCcchHHHHHHHHHHcCCeEEEecCC--EEEecCCCCHHHHHHHHHHHHccHHHHHHH-hC
Confidence 566677899999999999999999999853 457999999999999999999999999976 47
Q ss_pred ccccccCCCchhHHHHHhhhhhhhhHHHHHHHHHHHhhHHHhhCCCccccCchhh---HHHHHHHHHHHHHHHHHHHHHh
Q 005037 486 PAWHAHGKISLGFRLGYCCYGLWAPSCLATLFYSVVPSLYLLKGIPLFPEITSPW---IIPFAYVIFAKYGGSLVEFLWC 562 (717)
Q Consensus 486 pl~~~~~~l~~~qrl~y~~~~~~~~~~~~~l~~~~~P~l~ll~g~~~~p~~~~~~---~lp~~~~~~~~~~~~ll~~~~~ 562 (717)
|++ .+++++.||++|+....+++.+++.++++++|++++++++++++.....+ ++|++++ ..++.....
T Consensus 396 pl~--~~~l~~~~rl~~l~~~~~~~~~~~~li~ll~p~~~ll~~~~~~~~~~~~~~~~~lp~~l~------~~~~~~~~~ 467 (802)
T 4hg6_A 396 PLF--RRGLGIAQRLCYLNSMSFWFFPLVRMMFLVAPLIYLFFGIEIFVATFEEVLAYMPGYLAV------SFLVQNALF 467 (802)
T ss_dssp TTS--CSSCCHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHCCCCSCCCHHHHHHHHHHHHHH------HHHHHHHHH
T ss_pred ccc--cCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHhhcCHHHHHHHHHHHHHH------HHHHHHHHh
Confidence 864 46799999999999988889999999999999999999998886543332 2222211 111111222
Q ss_pred CCccccchhhhhHHHHHHHHhHHHHHHHHHHHHhCCCCCCeeeCccCCcchhhhhhhcceeeecccchhHHHHHHHHHHH
Q 005037 563 GGTALGWWNDQRLWLYKRTSSYLFAFIDTILKTLGFSESAFVVTAKVADQDVLERYEKEIMEFGDTSSMFTILSTLALLN 642 (717)
Q Consensus 563 g~~~~~ww~~~r~w~i~~~~~~l~~~~~~l~k~lg~~~~~F~VT~K~~~~~~~~~y~~~~~~f~~~~~l~~p~~~l~~l~ 642 (717)
+.....||+.. ..+...++.+...+...+++++.+|+||+|+.+.+. . + .+++..|+.++++++
T Consensus 468 ~~~r~~~~~~l-----~~~~~~~~~~~a~l~~l~~~~~~~f~VT~Kg~~~~~--~-------~--~~~~~~p~~~~~~l~ 531 (802)
T 4hg6_A 468 ARQRWPLVSEV-----YEVAQAPYLARAIVTTLLRPRSARFAVTAKDETLSE--N-------Y--ISPIYRPLLFTFLLC 531 (802)
T ss_dssp TTTSCTTHHHH-----HHHHHHHHHHHHHHHHHHSTTCCCCCCCCCCCCCSS--C-------C--BCTTCHHHHHHHHHH
T ss_pred cCcHHHHHHHH-----HHHHHHHHHHHHHHHHHhCCCCCcceECCCCccccc--c-------c--hhhHHHHHHHHHHHH
Confidence 33333455432 222222333333444456778899999999875432 1 1 236778888999999
Q ss_pred HHHHHHHHHHHHhcccchhhhHHHHHHHHHHHHHHHHHHHhhhhhhcccCCCC
Q 005037 643 LFCLIGAVKRVIIDDGFVKLYETMILQILLCSTLVLINWPLYQGLFLRKDNGK 695 (717)
Q Consensus 643 l~al~~gi~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~P~~~gl~~r~~~~~ 695 (717)
++++++|+++.... ........+..+|+.++++++.+.+.....|+.+.+
T Consensus 532 ~~~~~~~~~~~~~~---~~~~~~~~~~~~w~~~~l~~l~~~~~~~~~~~~~R~ 581 (802)
T 4hg6_A 532 LSGVLATLVRWVAF---PGDRSVLLVVGGWAVLNVLLVGFALRAVAEKQQRRA 581 (802)
T ss_dssp HHHHHHHHHHHHHC---GGGHHHHHHHHHHHHHHHHHHHHHHTTTBCCCCSCC
T ss_pred HHHHHHHHHHHhcc---CCccchhhhhhHHHHHHHHHHHHHHHHHhcCCCccc
Confidence 99999999988754 134455667788999999999988888887665543
No 2
>3bcv_A Putative glycosyltransferase protein; protein structure initiative II, PSI-II NYSGXRC, structural genomics; 2.35A {Bacteroides fragilis}
Probab=99.81 E-value=1.6e-19 Score=182.82 Aligned_cols=197 Identities=15% Similarity=0.109 Sum_probs=131.6
Q ss_pred CCCceEEEEecCCCCCCChHHHHHHHHHHHcCCCCCCCeEEEEEeCCCChhhHHHHHHhhcccccchhhhhhcCCCCCCc
Q 005037 97 KLPGVDIFVCTADPKIEPPMMVINTVLSVMAYDYPTDKLSVYLSDDASSDLTFYALMEASHFSTHWIPYCKKFNVEPRSP 176 (717)
Q Consensus 97 ~~P~VdV~I~t~n~~~Ep~~~v~~Tv~s~la~dYP~~kl~v~V~DDg~sd~T~~~l~ea~~fa~~w~pfc~~~~v~~r~p 176 (717)
..|.|+|+||||| ++ ..+.+||.|+++++|| .++|+|+||||+|.|.+.+.+.+ ++
T Consensus 3 ~~p~vsViIp~yn---~~-~~l~~~l~Sl~~q~~~--~~eiIvvDd~S~d~t~~~~~~~~----------~~-------- 58 (240)
T 3bcv_A 3 LIPKVSVIVPIYN---VE-KYLDQCVQALLAQTLS--DIEIILIDDESPDNCPKICDDYA----------AQ-------- 58 (240)
T ss_dssp CCCSEEEEEEESS---CT-TTHHHHHHHHHTCSSS--SEEEEEEECCCSSSHHHHHHHHH----------HH--------
T ss_pred CCCcEEEEEecCC---CH-HHHHHHHHHHHhCcCC--CeEEEEEECCCCcCHHHHHHHHH----------hh--------
Confidence 3689999999999 44 5899999999999998 68999999999999865443321 00
Q ss_pred hhhhhHHHHHHHHHHHHHhhhcccchHHHHHhhcCcccccCCCCCCCCccceeeeecCCCCCccccccCCCCeEEEEeec
Q 005037 177 AAYFINRLYEEMENRIQTATKLGRITEEIRMKHKGFSQWDSYSSPLDHDTILQILIDGRDPNAVDNERCALPTLVYLARE 256 (717)
Q Consensus 177 ~~yf~~~~ye~~~~ri~~~~~~~~~~~~~~~~~~g~~~w~~~~~~~~h~~iv~v~~~~~~~~~~d~~g~~~P~l~yv~Re 256 (717)
.|++.++..
T Consensus 59 ----------------------------------------------------------------------~~~i~~i~~- 67 (240)
T 3bcv_A 59 ----------------------------------------------------------------------YPNIKVIHK- 67 (240)
T ss_dssp ----------------------------------------------------------------------CSSEEEEEC-
T ss_pred ----------------------------------------------------------------------CCCEEEEEC-
Confidence 123666653
Q ss_pred cCCCCCCCChHHHHHHHHHhcccCCCccEEEEEcCCCCCCchHHHHHHHHHhhccCCCCeEEEEeccceeccCCcc----
Q 005037 257 KRPWHFQNFKAGAMNALIRVSSKISNGQVILNVDCDMYSNNSQVVRDALCFFIDEEKGHEVAFVQFPQNFDNVTKN---- 332 (717)
Q Consensus 257 krp~~~~~~KAGALN~al~~s~~~t~gd~Il~lDAD~~~~~p~~L~~~v~~f~d~~~~~~vg~VQ~Pq~f~n~~~~---- 332 (717)
+ ..|+++|+|.|++. ++||||+++|+|.++. |++|.+++..+.+++ ..+|.+.....+.+..
T Consensus 68 ~-----n~G~~~a~N~g~~~----a~g~~i~~lD~Dd~~~-~~~l~~l~~~~~~~~----~~~v~~~~~~~~~~~~~~~~ 133 (240)
T 3bcv_A 68 K-----NAGLGMACNSGLDV----ATGEYVAFCDSDDYVD-SDMYMTMYNVAQKYT----CDAVFTGLKRITMAGIPTGT 133 (240)
T ss_dssp C-----CCCHHHHHHHHHHH----CCSSEEEECCTTCCCC-TTHHHHHHHHHHHHT----CSEEEC--------------
T ss_pred C-----CCChHHHHHHHHHH----cCCCEEEEECCCCcCC-HHHHHHHHHHHHhcC----CCEEEEeeEEEccCCccccc
Confidence 2 36899999999998 6899999999999997 999999999998642 2333332221111110
Q ss_pred --------hhhhhhHHHHHHHHHhhhhccC-------CcccccccceEehhhhccCCCCchhhHhhhccCC-Cccchhhh
Q 005037 333 --------ELYSNSSRIFNEVELQGLDGYG-------CPLYTGSGCFHRREILCGSKYNKETKIEWKSKKD-SKGEESLL 396 (717)
Q Consensus 333 --------d~~~~~~~~f~~~~~~g~d~~~-------~~~~~Gtg~~~RR~aL~~~~~~~~~~~~~~~~ig-g~~~~~~~ 396 (717)
..+.. .. ..+ .....-+.. ....+|+++++||+++++ +| +|++..
T Consensus 134 ~~~~~~~~~~~~~-~~-~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~rr~~~~~--------------~g~~f~~~~-- 194 (240)
T 3bcv_A 134 VTHQKEFKLYKNK-NE-IHT-LLKDLIASDPYAREERAIQVSAKVVLYRRNLIEK--------------KHLRFVSER-- 194 (240)
T ss_dssp ------CEEECSH-HH-HHH-HHGGGTSSCHHHHHHHHHHHTCSCEEEEHHHHHH--------------TTCCCCCTT--
T ss_pred cccccccccccCH-HH-HHH-HHHHHhhcchhhccccccccchhheeeeHHHHHH--------------cCCccCCCC--
Confidence 00110 00 001 111110000 011357788999999998 66 554310
Q ss_pred hHHHhhhhcccccccccCCcCcccccCCCCCcchHHHHHHHHhcCCeEEEeCC
Q 005037 397 DLEETSKALASCTYERNTQWGKEMGLKYGCPAEDVVTGLSIQSRGWKSVYSKP 449 (717)
Q Consensus 397 ~~~~~~~~v~~c~Ye~~t~wG~~~G~~~~svtED~~t~~rl~~~Gwrsvy~~~ 449 (717)
....||.++++|+..+|+++.|++.
T Consensus 195 ----------------------------~~~~eD~~~~~r~~~~g~~i~~~~~ 219 (240)
T 3bcv_A 195 ----------------------------ILPSEDLIFNVDVLANSNIVCVLPQ 219 (240)
T ss_dssp ----------------------------TCTTHHHHHHHHHHTTCSCEEECC-
T ss_pred ----------------------------CccCCCHHHHHHHHHhCCEEEEECC
Confidence 0246999999999999999999975
No 3
>1xhb_A Polypeptide N-acetylgalactosaminyltransferase 1; glycosyltransferase-A (GT-A); HET: NAG BMA; 2.50A {Mus musculus} SCOP: b.42.2.1 c.68.1.17
Probab=99.81 E-value=4.3e-19 Score=199.19 Aligned_cols=245 Identities=16% Similarity=0.060 Sum_probs=161.8
Q ss_pred ccCCCCceEEEEecCCCCCCChHHHHHHHHHHHcCCCCCCCeEEEEEeCCCChh-hHHHHHHhhcccccchhhhhhcCCC
Q 005037 94 YEDKLPGVDIFVCTADPKIEPPMMVINTVLSVMAYDYPTDKLSVYLSDDASSDL-TFYALMEASHFSTHWIPYCKKFNVE 172 (717)
Q Consensus 94 ~~~~~P~VdV~I~t~n~~~Ep~~~v~~Tv~s~la~dYP~~kl~v~V~DDg~sd~-T~~~l~ea~~fa~~w~pfc~~~~v~ 172 (717)
+++++|.|+|+||+|| |+.+.+.+||.|+++++||...++|+|+||||+|. |.+.+.+.. +
T Consensus 24 ~~~~~p~vSVIIp~yN---~~~~~l~~~l~Sl~~q~~~~~~~EIIvVDd~S~d~~t~~~l~~~~----------~----- 85 (472)
T 1xhb_A 24 YPDNLPTTSVVIVFHN---EAWSTLLRTVHSVINRSPRHMIEEIVLVDDASERDFLKRPLESYV----------K----- 85 (472)
T ss_dssp CCSCCCCEEEEEEESS---CCHHHHHHHHHHHHHSSCGGGEEEEEEEECSCCCGGGTHHHHHHH----------H-----
T ss_pred CCcCCCCeEEEEEeCC---CCHHHHHHHHHHHHhcCcHhHceEEEEEECCCCcHHHHHHHHHHH----------H-----
Confidence 4567999999999999 76679999999999999997668999999999984 654333210 0
Q ss_pred CCCchhhhhHHHHHHHHHHHHHhhhcccchHHHHHhhcCcccccCCCCCCCCccceeeeecCCCCCccccccCCCC-eEE
Q 005037 173 PRSPAAYFINRLYEEMENRIQTATKLGRITEEIRMKHKGFSQWDSYSSPLDHDTILQILIDGRDPNAVDNERCALP-TLV 251 (717)
Q Consensus 173 ~r~p~~yf~~~~ye~~~~ri~~~~~~~~~~~~~~~~~~g~~~w~~~~~~~~h~~iv~v~~~~~~~~~~d~~g~~~P-~l~ 251 (717)
..| ++.
T Consensus 86 -------------------------------------------------------------------------~~~~~v~ 92 (472)
T 1xhb_A 86 -------------------------------------------------------------------------KLKVPVH 92 (472)
T ss_dssp -------------------------------------------------------------------------SSSSCEE
T ss_pred -------------------------------------------------------------------------HCCCcEE
Confidence 022 367
Q ss_pred EEeeccCCCCCCCChHHHHHHHHHhcccCCCccEEEEEcCCCCCCchHHHHHHHHHhhccCCCCeEEEEeccceeccCCc
Q 005037 252 YLAREKRPWHFQNFKAGAMNALIRVSSKISNGQVILNVDCDMYSNNSQVVRDALCFFIDEEKGHEVAFVQFPQNFDNVTK 331 (717)
Q Consensus 252 yv~Rekrp~~~~~~KAGALN~al~~s~~~t~gd~Il~lDAD~~~~~p~~L~~~v~~f~d~~~~~~vg~VQ~Pq~f~n~~~ 331 (717)
++..++| .|+++|+|.|++. ++||+|+++|+|..++ |++|.+++..+.+.. .++.+.. ....+.+.
T Consensus 93 vi~~~~n-----~G~~~a~N~g~~~----A~gd~i~flD~D~~~~-p~~L~~ll~~~~~~~---~~~v~~~-~~~~~~~~ 158 (472)
T 1xhb_A 93 VIRMEQR-----SGLIRARLKGAAV----SRGQVITFLDAHCECT-AGWLEPLLARIKHDR---RTVVCPI-IDVISDDT 158 (472)
T ss_dssp EEECSSC-----CCHHHHHHHHHHH----CCSSEEEEEESSEEEC-TTCHHHHHHHHHHCT---TEEEEEE-EEEECSSS
T ss_pred EEECCCC-----CChHHHHHHHHHh----ccCCeEEEECCCeEeC-ccHHHHHHHHHHhCC---CEEEEee-eeeEcCCC
Confidence 7766543 5799999999998 6899999999999997 999999999887532 3443321 11111110
Q ss_pred c------h----hhhhh----H-HHHHHHHHhhh-h---ccCCcccccccceEehhhhccCCCCchhhHhhhccCCCccc
Q 005037 332 N------E----LYSNS----S-RIFNEVELQGL-D---GYGCPLYTGSGCFHRREILCGSKYNKETKIEWKSKKDSKGE 392 (717)
Q Consensus 332 ~------d----~~~~~----~-~~f~~~~~~g~-d---~~~~~~~~Gtg~~~RR~aL~~~~~~~~~~~~~~~~igg~~~ 392 (717)
. . .+.-. . ........... + ....+...|+++++||+++++ +|||++
T Consensus 159 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~irr~~~~~--------------iGgfde 224 (472)
T 1xhb_A 159 FEYMAGSDMTYGGFNWKLNFRWYPVPQREMDRRKGDRTLPVRTPTMAGGLFSIDRDYFQE--------------IGTYDA 224 (472)
T ss_dssp CCEECCCTTEEEEECTTCCEEEEECCHHHHHHTTTCTTSCEECSBCCSSSEEEEHHHHHH--------------TTSCCT
T ss_pred ceeccCCCcccceeeccceeecccCCHHHHhcccCCCCCcccCccccceeEEEEHHHHHH--------------cCCCCC
Confidence 0 0 00000 0 00000000110 1 223455678888999999998 887764
Q ss_pred hhhhhHHHhhhhcccccccccCCcCcccccCCCCCcchHHHHHHHHhcCCeEEEeCCCCccc--cccCCc----C-----
Q 005037 393 ESLLDLEETSKALASCTYERNTQWGKEMGLKYGCPAEDVVTGLSIQSRGWKSVYSKPERDAF--LGVSPT----T----- 461 (717)
Q Consensus 393 ~~~~~~~~~~~~v~~c~Ye~~t~wG~~~G~~~~svtED~~t~~rl~~~Gwrsvy~~~~~~a~--~g~aP~----t----- 461 (717)
... .| -.||+++++|+...|+++.+++..+..- ....|. .
T Consensus 225 ~~~-------------------------~~----g~ED~dl~~R~~~~G~~i~~~p~~~v~H~~~~~~~~~~~~~~~~~~ 275 (472)
T 1xhb_A 225 GMD-------------------------IW----GGENLEISFRIWQCGGTLEIVTCSHVGHVFRKATPYTFPGGTGQII 275 (472)
T ss_dssp TSC-------------------------TT----CCCCSHHHHHHHHTTCEEEEEEEEEEEEEC------------CHHH
T ss_pred ccc-------------------------cc----CchhHHHHHHHHhcCCeEEEccCcEEEEEccCcCCCCCCcchhhHH
Confidence 310 01 1699999999999999999987532110 011221 1
Q ss_pred HHHHHHHHHHHhcchHHHHHhhhccc
Q 005037 462 LLQLLVQHKRWSEGNFQIFISKYCPA 487 (717)
Q Consensus 462 l~~~~~Qr~RWa~G~lqil~~~~~pl 487 (717)
.+...++..||..+..+.++.+ +|-
T Consensus 276 ~~n~~r~~~~W~d~~~~~~~~~-~p~ 300 (472)
T 1xhb_A 276 NKNNRRLAEVWMDEFKNFFYII-SPG 300 (472)
T ss_dssp HHHHHHHHHHHCGGGGHHHHHT-STT
T ss_pred HHHHHHHHHHHHHHHHHHHHhh-Ccc
Confidence 4567778889999999988754 563
No 4
>1qg8_A Protein (spore coat polysaccharide biosynthesis P SPSA); glycosyltransferase, transferase; 1.50A {Bacillus subtilis} SCOP: c.68.1.1 PDB: 1h7q_A* 1h7l_A 1qgq_A* 1qgs_A*
Probab=99.79 E-value=1.1e-19 Score=185.82 Aligned_cols=225 Identities=12% Similarity=0.096 Sum_probs=141.2
Q ss_pred CceEEEEecCCCCCCChHHHHHHHHHHHcCCCCCCCeEEEEEeCCCChhhHHHHHHhhcccccchhhhhhcCCCCCCchh
Q 005037 99 PGVDIFVCTADPKIEPPMMVINTVLSVMAYDYPTDKLSVYLSDDASSDLTFYALMEASHFSTHWIPYCKKFNVEPRSPAA 178 (717)
Q Consensus 99 P~VdV~I~t~n~~~Ep~~~v~~Tv~s~la~dYP~~kl~v~V~DDg~sd~T~~~l~ea~~fa~~w~pfc~~~~v~~r~p~~ 178 (717)
|.|+|+||||| ++ ..+.+||.|+++++|| .++|+|+||||+|.|.+.+.+.+ +
T Consensus 1 p~vSViIp~yn---~~-~~l~~~l~Sl~~q~~~--~~eiivvDd~S~d~t~~~~~~~~----------~----------- 53 (255)
T 1qg8_A 1 PKVSVIMTSYN---KS-DYVAKSISSILSQTFS--DFELFIMDDNSNEETLNVIRPFL----------N----------- 53 (255)
T ss_dssp CCEEEEEEESS---CT-TTHHHHHHHHHTCSCC--CEEEEEEECSCCHHHHHHHGGGG----------G-----------
T ss_pred CeEEEEEEcCC---CH-HHHHHHHHHHHhccCC--ceEEEEEECCCCchHHHHHHHHh----------h-----------
Confidence 78999999999 44 5899999999999999 68999999999998865332110 0
Q ss_pred hhhHHHHHHHHHHHHHhhhcccchHHHHHhhcCcccccCCCCCCCCccceeeeecCCCCCccccccCCCCeEEEEeeccC
Q 005037 179 YFINRLYEEMENRIQTATKLGRITEEIRMKHKGFSQWDSYSSPLDHDTILQILIDGRDPNAVDNERCALPTLVYLAREKR 258 (717)
Q Consensus 179 yf~~~~ye~~~~ri~~~~~~~~~~~~~~~~~~g~~~w~~~~~~~~h~~iv~v~~~~~~~~~~d~~g~~~P~l~yv~Rekr 258 (717)
-|++.|+..+..
T Consensus 54 --------------------------------------------------------------------~~~i~~i~~~~~ 65 (255)
T 1qg8_A 54 --------------------------------------------------------------------DNRVRFYQSDIS 65 (255)
T ss_dssp --------------------------------------------------------------------STTEEEEECCCC
T ss_pred --------------------------------------------------------------------cCCEEEEecccc
Confidence 023666665410
Q ss_pred CC----CCCCChHHHHHHHHHhcccCCCccEEEEEcCCCCCCchHHHHHHHHHhhccCCCCeEEEEeccceec--cCCcc
Q 005037 259 PW----HFQNFKAGAMNALIRVSSKISNGQVILNVDCDMYSNNSQVVRDALCFFIDEEKGHEVAFVQFPQNFD--NVTKN 332 (717)
Q Consensus 259 p~----~~~~~KAGALN~al~~s~~~t~gd~Il~lDAD~~~~~p~~L~~~v~~f~d~~~~~~vg~VQ~Pq~f~--n~~~~ 332 (717)
+ ....++++|+|.|++. ++||||+++|+|.++. |++|.+++..+.+. +++++|.+..... +.+..
T Consensus 66 -~~~~~~~n~G~~~a~N~gi~~----a~g~~i~~lD~Dd~~~-~~~l~~~~~~~~~~---~~~~~v~~~~~~~~~~~~~~ 136 (255)
T 1qg8_A 66 -GVKERTEKTRYAALINQAIEM----AEGEYITYATDDNIYM-PDRLLKMVRELDTH---PEKAVIYSASKTYHLNENRD 136 (255)
T ss_dssp -SHHHHHSSCHHHHHHHHHHHH----CCCSEEEEEETTEEEC-TTHHHHHHHHHHHC---TTCCEEEEEEEEEEEC---C
T ss_pred -cccccccccCHHHHHHHHHHH----cCCCEEEEeCCCCccC-hHHHHHHHHHHHhC---CCceEEEeceEEEEeCCCCc
Confidence 0 0136799999999998 6999999999999997 99999999998742 2577787765544 32211
Q ss_pred hhhhhhHHHHHHHHHhhhhccCCcccccccceEehhhhccCCCCchhhHhhhccCC-CccchhhhhHHHhhhhccccccc
Q 005037 333 ELYSNSSRIFNEVELQGLDGYGCPLYTGSGCFHRREILCGSKYNKETKIEWKSKKD-SKGEESLLDLEETSKALASCTYE 411 (717)
Q Consensus 333 d~~~~~~~~f~~~~~~g~d~~~~~~~~Gtg~~~RR~aL~~~~~~~~~~~~~~~~ig-g~~~~~~~~~~~~~~~v~~c~Ye 411 (717)
. ........ ............|+++++||+++.+ +| +|.+
T Consensus 137 ~-~~~~~~~~-----~~~~~~~~~~~~~~~~~~rr~~~~~--------------~g~~f~~------------------- 177 (255)
T 1qg8_A 137 I-VKETVRPA-----AQVTWNAPCAIDHCSVMHRYSVLEK--------------VKEKFGS------------------- 177 (255)
T ss_dssp E-EEEEEECC-----CSCBSCCTTTSCGGGEEEETHHHHH--------------HHHHHSS-------------------
T ss_pred c-hhhccCch-----HHHHHhhcCCCccceEEEEHHHHHh--------------hcccccc-------------------
Confidence 0 00000000 0011122344678899999999988 55 4410
Q ss_pred ccCCcCcccccCCCCCcchHHHHHHHHhcCCeEEEeCCCCccccccCCcCHHHHH--HHHHHHhc
Q 005037 412 RNTQWGKEMGLKYGCPAEDVVTGLSIQSRGWKSVYSKPERDAFLGVSPTTLLQLL--VQHKRWSE 474 (717)
Q Consensus 412 ~~t~wG~~~G~~~~svtED~~t~~rl~~~Gwrsvy~~~~~~a~~g~aP~tl~~~~--~Qr~RWa~ 474 (717)
.|..+-.+ ...||.++.+++..+| +.+|++.. ...+-..+.+..... .|+.+|.+
T Consensus 178 ---~~~~~~~~---~~~eD~~~~~r~~~~g-~~~~~~~~-~~~~r~~~~s~s~~~~~~~~~~~~~ 234 (255)
T 1qg8_A 178 ---YWDESPAF---YRIGDARFFWRVNHFY-PFYPLDEE-LDLNYITDQSIHFQLFELEKNEFVR 234 (255)
T ss_dssp ---SSCCCGGG---STTHHHHHHHHHTTTC-CBEEEEEE-EEEEEEC--------------CTGG
T ss_pred ---cccCCccc---chHHHHHHHHHHHHhC-CEEEecCc-EEEEEEcCCccchhHHHHHHHHHHH
Confidence 11100011 3579999999999987 68888753 343445566665544 44444443
No 5
>2d7i_A Polypeptide N-acetylgalactosaminyltransferase 10; beta trefoil, rossmann fold; HET: NAG NGA UDP; 2.50A {Homo sapiens} PDB: 2d7r_A*
Probab=99.78 E-value=3.4e-19 Score=205.30 Aligned_cols=245 Identities=16% Similarity=0.103 Sum_probs=162.7
Q ss_pred ccCCCCceEEEEecCCCCCCChHHHHHHHHHHHcCCCCCCCeEEEEEeCCCChhh-HHHHHHhhcccccchhhhhhcCCC
Q 005037 94 YEDKLPGVDIFVCTADPKIEPPMMVINTVLSVMAYDYPTDKLSVYLSDDASSDLT-FYALMEASHFSTHWIPYCKKFNVE 172 (717)
Q Consensus 94 ~~~~~P~VdV~I~t~n~~~Ep~~~v~~Tv~s~la~dYP~~kl~v~V~DDg~sd~T-~~~l~ea~~fa~~w~pfc~~~~v~ 172 (717)
+.+++|.|+|+||+|| |+.+.+.+||.|+++++||...++|+|+||||+|.| .+.+.+.. +
T Consensus 107 ~~~~~P~vSVIIp~yN---e~~~~L~~~L~Sll~qt~~~~~~EIIVVDDgS~D~tl~~~l~~~~----------~----- 168 (570)
T 2d7i_A 107 YLETLPNTSIIIPFHN---EGWSSLLRTVHSVLNRSPPELVAEIVLVDDFSDREHLKKPLEDYM----------A----- 168 (570)
T ss_dssp EESSCCCEEEEEEESS---CCHHHHHHHHHHHHHHSCGGGEEEEEEEECSCCCGGGTHHHHHHH----------T-----
T ss_pred cCCCCCCeEEEEEECC---CCHHHHHHHHHHHHhcCCccCcEEEEEEECCCCcHHHHHHHHHHH----------H-----
Confidence 3466899999999999 766799999999999999965669999999999988 44332210 0
Q ss_pred CCCchhhhhHHHHHHHHHHHHHhhhcccchHHHHHhhcCcccccCCCCCCCCccceeeeecCCCCCccccccCCCCeEEE
Q 005037 173 PRSPAAYFINRLYEEMENRIQTATKLGRITEEIRMKHKGFSQWDSYSSPLDHDTILQILIDGRDPNAVDNERCALPTLVY 252 (717)
Q Consensus 173 ~r~p~~yf~~~~ye~~~~ri~~~~~~~~~~~~~~~~~~g~~~w~~~~~~~~h~~iv~v~~~~~~~~~~d~~g~~~P~l~y 252 (717)
..|++.+
T Consensus 169 -------------------------------------------------------------------------~~~~v~v 175 (570)
T 2d7i_A 169 -------------------------------------------------------------------------LFPSVRI 175 (570)
T ss_dssp -------------------------------------------------------------------------TSTTEEE
T ss_pred -------------------------------------------------------------------------hCCeEEE
Confidence 0134677
Q ss_pred EeeccCCCCCCCChHHHHHHHHHhcccCCCccEEEEEcCCCCCCchHHHHHHHHHhhccCCCCeEEEEeccceeccCCcc
Q 005037 253 LAREKRPWHFQNFKAGAMNALIRVSSKISNGQVILNVDCDMYSNNSQVVRDALCFFIDEEKGHEVAFVQFPQNFDNVTKN 332 (717)
Q Consensus 253 v~Rekrp~~~~~~KAGALN~al~~s~~~t~gd~Il~lDAD~~~~~p~~L~~~v~~f~d~~~~~~vg~VQ~Pq~f~n~~~~ 332 (717)
+..++ ..++++|+|.|++. ++||+|+++|+|.+++ |++|.+++..+.+.. .+ .|.....+.+.+..
T Consensus 176 i~~~~-----n~G~~~A~N~G~~~----A~gd~i~fLD~D~~~~-p~~L~~ll~~l~~~~---~~-vv~~~i~~~~~~~~ 241 (570)
T 2d7i_A 176 LRTKK-----REGLIRTRMLGASV----ATGDVITFLDSHCEAN-VNWLPPLLDRIARNR---KT-IVCPMIDVIDHDDF 241 (570)
T ss_dssp EECSS-----CCCHHHHHHHHHHH----CCSSEEEECCSSEEEC-TTCSHHHHHHHHHCT---TE-EEEEEEEEECTTTC
T ss_pred EECCC-----CCCHHHHHHHHHHh----cCCCEEEEEcCCcccc-ccHHHHHHHHHHhCC---CE-EEeeeeeccCCCch
Confidence 76654 36899999999998 6899999999999996 999999999987642 33 23221222111100
Q ss_pred -------hhh-hh-hHHHHHHHHHh----h----hhccCCcccccccceEehhhhccCCCCchhhHhhhccCCCccchhh
Q 005037 333 -------ELY-SN-SSRIFNEVELQ----G----LDGYGCPLYTGSGCFHRREILCGSKYNKETKIEWKSKKDSKGEESL 395 (717)
Q Consensus 333 -------d~~-~~-~~~~f~~~~~~----g----~d~~~~~~~~Gtg~~~RR~aL~~~~~~~~~~~~~~~~igg~~~~~~ 395 (717)
... +. ....++..... . ......+...|++.++||+++++ +|+|++...
T Consensus 242 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~irr~~~~~--------------iGgfDe~~~ 307 (570)
T 2d7i_A 242 RYETQAGDAMRGAFDWEMYYKRIPIPPELQKADPSDPFESPVMAGGLFAVDRKWFWE--------------LGGYDPGLE 307 (570)
T ss_dssp CEECCTTSSCEEEECTTCCEEEECCCTTTCCSSTTSCEECSSCCSSSEEEEHHHHHH--------------TTSSCTTCC
T ss_pred hhccccCCcccccccccccccccccchhhhccCCCcceecccccceEEEEEHHHHHh--------------cCCCCCccc
Confidence 000 00 00000000000 0 01122345679999999999998 887764210
Q ss_pred hhHHHhhhhcccccccccCCcCcccccCCCCCcchHHHHHHHHhcCCeEEEeCCCCcc--ccccCCc-------CHHHHH
Q 005037 396 LDLEETSKALASCTYERNTQWGKEMGLKYGCPAEDVVTGLSIQSRGWKSVYSKPERDA--FLGVSPT-------TLLQLL 466 (717)
Q Consensus 396 ~~~~~~~~~v~~c~Ye~~t~wG~~~G~~~~svtED~~t~~rl~~~Gwrsvy~~~~~~a--~~g~aP~-------tl~~~~ 466 (717)
. ++ .||+++++|+..+||+++|++..... +.+..|. ..+...
T Consensus 308 -------------------------~--~g--~ED~dl~~Rl~~~G~~i~~~p~~~v~H~~r~~~~~~~~~~~~~~~n~~ 358 (570)
T 2d7i_A 308 -------------------------I--WG--GEQYEISFKVWMCGGRMEDIPCSRVGHIYRKYVPYKVPAGVSLARNLK 358 (570)
T ss_dssp -------------------------S--SS--SHHHHHHHHHHHTTCEEEEEEEEEEEECCCSSCCSCCCSSCCHHHHHH
T ss_pred -------------------------c--cC--cchHHHHHHHHhCCCeEEEccCeEEEEEccccCCCCCCchhhhHHHHH
Confidence 0 01 59999999999999999998753211 1122231 145677
Q ss_pred HHHHHHhcchHHHHHhhhccc
Q 005037 467 VQHKRWSEGNFQIFISKYCPA 487 (717)
Q Consensus 467 ~Qr~RWa~G~lqil~~~~~pl 487 (717)
+...||....-+.+..+ +|-
T Consensus 359 r~~~~W~d~~~~~~y~~-~p~ 378 (570)
T 2d7i_A 359 RVAEVWMDEYAEYIYQR-RPE 378 (570)
T ss_dssp HHHHHHCGGGHHHHHTT-CGG
T ss_pred HHHHHHHHHHHHHHHhc-Ccc
Confidence 77889999998887754 453
No 6
>2z86_A Chondroitin synthase; GT-A, glycosyltransferase A, fold; HET: UGA UDP; 2.40A {Escherichia coli} PDB: 2z87_A*
Probab=99.78 E-value=1.6e-18 Score=201.15 Aligned_cols=215 Identities=17% Similarity=0.173 Sum_probs=145.9
Q ss_pred CCCceEEEEecCCCCCCChHHHHHHHHHHHcCCCCCCCeEEEEEeCCCChhhHHHHHHhhcccccchhhhhhcCCCCCCc
Q 005037 97 KLPGVDIFVCTADPKIEPPMMVINTVLSVMAYDYPTDKLSVYLSDDASSDLTFYALMEASHFSTHWIPYCKKFNVEPRSP 176 (717)
Q Consensus 97 ~~P~VdV~I~t~n~~~Ep~~~v~~Tv~s~la~dYP~~kl~v~V~DDg~sd~T~~~l~ea~~fa~~w~pfc~~~~v~~r~p 176 (717)
..|.|+|+||||| |+ +.+.+||.|+++++||. .++|+|+|||++|.|.+.+.+.. +
T Consensus 91 ~~p~vsviIp~~n---~~-~~l~~~l~sl~~q~~~~-~~eiivvDd~s~d~t~~~~~~~~----------~--------- 146 (625)
T 2z86_A 91 IIDGLSIVIPTYN---RA-KILAITLACLCNQKTIY-DYEVIVADDGSKENIEEIVREFE----------S--------- 146 (625)
T ss_dssp CCCCEEEEEEESS---CH-HHHHHHHHHHHTCCCSS-CEEEEEEEESCSSCHHHHHHTTT----------T---------
T ss_pred cCCcEEEEEecCC---cH-HHHHHHHHHHHhhccCC-CeEEEEEeCCCchhHHHHHHHhh----------h---------
Confidence 4689999999999 64 79999999999999986 78999999999998754322110 0
Q ss_pred hhhhhHHHHHHHHHHHHHhhhcccchHHHHHhhcCcccccCCCCCCCCccceeeeecCCCCCccccccCCCCeEEEEeec
Q 005037 177 AAYFINRLYEEMENRIQTATKLGRITEEIRMKHKGFSQWDSYSSPLDHDTILQILIDGRDPNAVDNERCALPTLVYLARE 256 (717)
Q Consensus 177 ~~yf~~~~ye~~~~ri~~~~~~~~~~~~~~~~~~g~~~w~~~~~~~~h~~iv~v~~~~~~~~~~d~~g~~~P~l~yv~Re 256 (717)
.+.+.|+.++
T Consensus 147 ----------------------------------------------------------------------~~~i~~i~~~ 156 (625)
T 2z86_A 147 ----------------------------------------------------------------------LLNIKYVRQK 156 (625)
T ss_dssp ----------------------------------------------------------------------TSCEEEEEEC
T ss_pred ----------------------------------------------------------------------cCCeEEEEeC
Confidence 0236777764
Q ss_pred cCCCCCCCChHHHHHHHHHhcccCCCccEEEEEcCCCCCCchHHHHHHHHHhhccCCCCeEEEEeccceeccCCcch-hh
Q 005037 257 KRPWHFQNFKAGAMNALIRVSSKISNGQVILNVDCDMYSNNSQVVRDALCFFIDEEKGHEVAFVQFPQNFDNVTKNE-LY 335 (717)
Q Consensus 257 krp~~~~~~KAGALN~al~~s~~~t~gd~Il~lDAD~~~~~p~~L~~~v~~f~d~~~~~~vg~VQ~Pq~f~n~~~~d-~~ 335 (717)
++ .++|++|+|.|++. ++||+|+++|+|+++. |++|.+++..|.+. +.+++++..+.+.+..... .+
T Consensus 157 ~~----~~g~~~a~N~g~~~----a~g~~v~~lD~D~~~~-~~~l~~~~~~~~~~---~~~~~~g~~~~~~~~~~~~~~~ 224 (625)
T 2z86_A 157 DY----GYQLCAVRNLGLRA----AKYNYVAILDCDMAPN-PLWVQSYMELLAVD---DNVALIGPRKYIDTSKHTYLDF 224 (625)
T ss_dssp CC----SCCHHHHHHHHHHH----CCSSEEEEECTTEEEC-TTHHHHHHHHHHHC---TTEEEECCEEEECCTTCCHHHH
T ss_pred CC----CcchhHHHHHHHHh----CCcCEEEEECCCCCCC-HHHHHHHHHHHhcC---CceEEEEeeeeccCcccchhhc
Confidence 32 35799999999998 6899999999999997 99999999999742 2688887655444322100 00
Q ss_pred ------hhh-HHH-----HHH------------HHHh---hhhccC--CcccccccceEehhhhccCCCCchhhHhhhcc
Q 005037 336 ------SNS-SRI-----FNE------------VELQ---GLDGYG--CPLYTGSGCFHRREILCGSKYNKETKIEWKSK 386 (717)
Q Consensus 336 ------~~~-~~~-----f~~------------~~~~---g~d~~~--~~~~~Gtg~~~RR~aL~~~~~~~~~~~~~~~~ 386 (717)
... ... +.. .... ...... ..+++|+++++||+++++
T Consensus 225 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~rr~~l~~-------------- 290 (625)
T 2z86_A 225 LSQKSLINEIPEIITNNQVAGKVEQNKSVDWRIEHFKNTDNLRLCNTPFRFFSGGNVAFAKKWLFR-------------- 290 (625)
T ss_dssp HHSTTGGGTSCC---------------CCCTHHHHHHHTTTTTTCSCGGGGCCTTEEEEETHHHHH--------------
T ss_pred ccchHHhhhcchhccCCchhhhhccCCccccchhhhcccccccccCCceeEEeeceeeeEHHHHHH--------------
Confidence 000 000 000 0000 001111 124789999999999998
Q ss_pred CCCccchhhhhHHHhhhhcccccccccCCcCcccccCCCCCcchHHHHHHHHhcCCeEEEeCCCCccccccCCcCH
Q 005037 387 KDSKGEESLLDLEETSKALASCTYERNTQWGKEMGLKYGCPAEDVVTGLSIQSRGWKSVYSKPERDAFLGVSPTTL 462 (717)
Q Consensus 387 igg~~~~~~~~~~~~~~~v~~c~Ye~~t~wG~~~G~~~~svtED~~t~~rl~~~Gwrsvy~~~~~~a~~g~aP~tl 462 (717)
+|||++... + ++ .||.++++|++.+||++.|++.. .+ ....|.+-
T Consensus 291 iGgfde~~~-------------------------~--~g--~ED~dl~~Rl~~~G~~i~~~p~~-~v-~H~~~~~~ 335 (625)
T 2z86_A 291 AGWFDEEFT-------------------------H--WG--GEDNEFGYRLYREGCYFRSVEGA-MA-YHQEPPGK 335 (625)
T ss_dssp HCCCCTTCS-------------------------S--CC--CHHHHHHHHHHHTTCEEEECGGG-CE-EEECCC--
T ss_pred hCCCccccc-------------------------c--CC--cchhhhhhhHHhCCceEEEcccc-hh-hccCCccc
Confidence 777664210 0 11 69999999999999999999853 33 34455443
No 7
>2ffu_A Ppgalnact-2, polypeptide N-acetylgalactosaminyltransferase 2, protein-UDP; ppgalnact, mucin, glycosyltransferase; HET: UDP; 1.64A {Homo sapiens} PDB: 2ffv_A*
Probab=99.78 E-value=7.7e-19 Score=198.92 Aligned_cols=242 Identities=13% Similarity=0.065 Sum_probs=157.7
Q ss_pred ccCCCCceEEEEecCCCCCCChHHHHHHHHHHHcCCCCCCCeEEEEEeCCCChhhHHHHHHhhcccccchhhhhhcCCCC
Q 005037 94 YEDKLPGVDIFVCTADPKIEPPMMVINTVLSVMAYDYPTDKLSVYLSDDASSDLTFYALMEASHFSTHWIPYCKKFNVEP 173 (717)
Q Consensus 94 ~~~~~P~VdV~I~t~n~~~Ep~~~v~~Tv~s~la~dYP~~kl~v~V~DDg~sd~T~~~l~ea~~fa~~w~pfc~~~~v~~ 173 (717)
+..++|.|+|+||+|| |+...+.+||.|+++++||...++|+|+||||+|.|.+.+ ++
T Consensus 61 ~~~~~p~vSVIIp~yN---~~~~~L~~~l~Sl~~q~~~~~~~EIIvVDDgS~D~t~~~~-----~~-------------- 118 (501)
T 2ffu_A 61 WRVDLPATSVVITFHN---EARSALLRTVVSVLKKSPPHLIKEIILVDDYSNDPEDGAL-----LG-------------- 118 (501)
T ss_dssp CCSSCCCEEEEEEESS---CCHHHHHHHHHHHHHHSCGGGEEEEEEEECSCSCTHHHHG-----GG--------------
T ss_pred CCcCCCCEEEEEEeCc---CcHHHHHHHHHHHHhhCchhhceeEEEEECCCCchHHHHH-----Hh--------------
Confidence 4567999999999999 6644899999999999999766799999999999874210 00
Q ss_pred CCchhhhhHHHHHHHHHHHHHhhhcccchHHHHHhhcCcccccCCCCCCCCccceeeeecCCCCCccccccCCCCeEEEE
Q 005037 174 RSPAAYFINRLYEEMENRIQTATKLGRITEEIRMKHKGFSQWDSYSSPLDHDTILQILIDGRDPNAVDNERCALPTLVYL 253 (717)
Q Consensus 174 r~p~~yf~~~~ye~~~~ri~~~~~~~~~~~~~~~~~~g~~~w~~~~~~~~h~~iv~v~~~~~~~~~~d~~g~~~P~l~yv 253 (717)
..|++.++
T Consensus 119 ------------------------------------------------------------------------~~~~v~vi 126 (501)
T 2ffu_A 119 ------------------------------------------------------------------------KIEKVRVL 126 (501)
T ss_dssp ------------------------------------------------------------------------GBTTEEEE
T ss_pred ------------------------------------------------------------------------cCCCEEEE
Confidence 01347777
Q ss_pred eeccCCCCCCCChHHHHHHHHHhcccCCCccEEEEEcCCCCCCchHHHHHHHHHhhccCCCCeEEEEeccceeccCCcc-
Q 005037 254 AREKRPWHFQNFKAGAMNALIRVSSKISNGQVILNVDCDMYSNNSQVVRDALCFFIDEEKGHEVAFVQFPQNFDNVTKN- 332 (717)
Q Consensus 254 ~Rekrp~~~~~~KAGALN~al~~s~~~t~gd~Il~lDAD~~~~~p~~L~~~v~~f~d~~~~~~vg~VQ~Pq~f~n~~~~- 332 (717)
..+++ .|+++|+|.|++. ++||+|+++|+|..++ |++|.+++..+.+.. .++|.......+.+..
T Consensus 127 ~~~~n-----~G~~~A~N~G~~~----A~gd~i~flD~D~~~~-p~~L~~ll~~~~~~~----~~vv~~~~~~~~~~~~~ 192 (501)
T 2ffu_A 127 RNDRR-----EGLMRSRVRGADA----AQAKVLTFLDSHCECN-EHWLEPLLERVAEDR----TRVVSPIIDVINMDNFQ 192 (501)
T ss_dssp ECSSC-----CHHHHHHHHHHHH----CCSSEEEECCSSEEEC-TTCHHHHHHHHHHCT----TEEEEEEEEEECTTTCC
T ss_pred ECCCC-----cCHHHHHHHHHHh----cCCCEEEEECCCcccC-ccHHHHHHHHHHhCC----CeEEEeeeccCcCCCce
Confidence 66543 5799999999998 6899999999999997 999999999987642 2344322111111100
Q ss_pred ---------hhhhhhH-----HHHHHHHHhhh----hccCCcccccccceEehhhhccCCCCchhhHhhhccCCCccchh
Q 005037 333 ---------ELYSNSS-----RIFNEVELQGL----DGYGCPLYTGSGCFHRREILCGSKYNKETKIEWKSKKDSKGEES 394 (717)
Q Consensus 333 ---------d~~~~~~-----~~f~~~~~~g~----d~~~~~~~~Gtg~~~RR~aL~~~~~~~~~~~~~~~~igg~~~~~ 394 (717)
..+.... ........... .....+...|++.++||+++++ +|+|++..
T Consensus 193 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~irr~~~~~--------------iGgfde~~ 258 (501)
T 2ffu_A 193 YVGASADLKGGFDWNLVFKWDYMTPEQRRSRQGNPVAPIKTPMIAGGLFVMDKFYFEE--------------LGKYDMMM 258 (501)
T ss_dssp EECBCSSEEEEECTTCCEEEEECCHHHHHHTSSCTTSCEECSSCCSSSEEEEHHHHHH--------------TTCCCTTC
T ss_pred eecCCcccceEeeecCCCccccCCHHHHhhccCCCCCcccCccccceEEEEEHHHHHH--------------hCCCCccc
Confidence 0000000 00000000111 1122445678899999999998 88776421
Q ss_pred hhhHHHhhhhcccccccccCCcCcccccCCCCCcchHHHHHHHHhcCCeEEEeCCCCccccc-------cCCcC-----H
Q 005037 395 LLDLEETSKALASCTYERNTQWGKEMGLKYGCPAEDVVTGLSIQSRGWKSVYSKPERDAFLG-------VSPTT-----L 462 (717)
Q Consensus 395 ~~~~~~~~~~v~~c~Ye~~t~wG~~~G~~~~svtED~~t~~rl~~~Gwrsvy~~~~~~a~~g-------~aP~t-----l 462 (717)
. .| -.||+++++|+...|++++|++... ..+- ..|.. .
T Consensus 259 ~-------------------------~~----g~ED~dl~~Rl~~~G~~i~~~p~~~-v~H~~r~~~~~~~~~~~~~~~~ 308 (501)
T 2ffu_A 259 D-------------------------VW----GGENLEISFRVWQCGGSLEIIPCSR-VGHVFRKQHPYTFPGGSGTVFA 308 (501)
T ss_dssp C-------------------------SS----SSHHHHHHHHHHHTTCEEEEEEEEE-EEECCCSSCCSCCTTCHHHHHH
T ss_pred c-------------------------cc----CcchHHHHHHHHhcCCeEEEccCcE-EEEEccCcCCCcCCccchhHHH
Confidence 0 00 1799999999999999999987422 1110 01221 2
Q ss_pred HHHHHHHHHHhcchHHHHHhhhcccc
Q 005037 463 LQLLVQHKRWSEGNFQIFISKYCPAW 488 (717)
Q Consensus 463 ~~~~~Qr~RWa~G~lqil~~~~~pl~ 488 (717)
....+...+|..+..+.++.+ +|..
T Consensus 309 ~n~~r~~~~w~d~~~~~~y~~-~p~~ 333 (501)
T 2ffu_A 309 RNTRRAAEVWMDEYKNFYYAA-VPSA 333 (501)
T ss_dssp HHHHHHHHHHCGGGHHHHHHH-CGGG
T ss_pred HHHHHHHHHHHHHHHHHHhhc-Cccc
Confidence 344555667777777776653 5653
No 8
>2z86_A Chondroitin synthase; GT-A, glycosyltransferase A, fold; HET: UGA UDP; 2.40A {Escherichia coli} PDB: 2z87_A*
Probab=99.71 E-value=2.3e-17 Score=191.45 Aligned_cols=222 Identities=18% Similarity=0.133 Sum_probs=153.2
Q ss_pred CCCceEEEEecCCCCCCChHHHHHHHHHHHcCCCCCCCeEEEEEeCCCChhhHHHHHHhhcccccchhhhhhcCCCCCCc
Q 005037 97 KLPGVDIFVCTADPKIEPPMMVINTVLSVMAYDYPTDKLSVYLSDDASSDLTFYALMEASHFSTHWIPYCKKFNVEPRSP 176 (717)
Q Consensus 97 ~~P~VdV~I~t~n~~~Ep~~~v~~Tv~s~la~dYP~~kl~v~V~DDg~sd~T~~~l~ea~~fa~~w~pfc~~~~v~~r~p 176 (717)
..|.|+|+||||| ++ ..+.+||.|+++++|| .++|+|+||||+|.|.+.+.+..+
T Consensus 373 ~~~~vsiii~~yn---~~-~~l~~~l~s~~~q~~~--~~eiivvdd~S~d~t~~~~~~~~~------------------- 427 (625)
T 2z86_A 373 RVPLVSIYIPAYN---CS-KYIVRCVESALNQTIT--DLEVCICDDGSTDDTLRILQEHYA------------------- 427 (625)
T ss_dssp SSCSEEEEEEESS---CT-TTHHHHHHHHHSSSCC--SEEEEEEEESCSSSHHHHHHHHHT-------------------
T ss_pred cCCeEEEEEeCCC---CH-HHHHHHHHHHHhCcCC--CeEEEEEECcCChhHHHHHHHHHh-------------------
Confidence 3689999999999 43 5899999999999998 689999999999998764433210
Q ss_pred hhhhhHHHHHHHHHHHHHhhhcccchHHHHHhhcCcccccCCCCCCCCccceeeeecCCCCCccccccCCCCeEEEEeec
Q 005037 177 AAYFINRLYEEMENRIQTATKLGRITEEIRMKHKGFSQWDSYSSPLDHDTILQILIDGRDPNAVDNERCALPTLVYLARE 256 (717)
Q Consensus 177 ~~yf~~~~ye~~~~ri~~~~~~~~~~~~~~~~~~g~~~w~~~~~~~~h~~iv~v~~~~~~~~~~d~~g~~~P~l~yv~Re 256 (717)
..|++.++. +
T Consensus 428 ---------------------------------------------------------------------~~~~i~~~~-~ 437 (625)
T 2z86_A 428 ---------------------------------------------------------------------NHPRVRFIS-Q 437 (625)
T ss_dssp ---------------------------------------------------------------------TCTTEEEEE-E
T ss_pred ---------------------------------------------------------------------hCCcEEEEe-C
Confidence 012366664 3
Q ss_pred cCCCCCCCChHHHHHHHHHhcccCCCccEEEEEcCCCCCCchHHHHHHHHHhh-ccCCCCeEEEEeccceeccCCcchhh
Q 005037 257 KRPWHFQNFKAGAMNALIRVSSKISNGQVILNVDCDMYSNNSQVVRDALCFFI-DEEKGHEVAFVQFPQNFDNVTKNELY 335 (717)
Q Consensus 257 krp~~~~~~KAGALN~al~~s~~~t~gd~Il~lDAD~~~~~p~~L~~~v~~f~-d~~~~~~vg~VQ~Pq~f~n~~~~d~~ 335 (717)
+ ..|+++|+|.|++. ++||||+++|+|.++. |++|.+++..|. ++ ++++|.+...+.+.+.....
T Consensus 438 ~-----n~G~~~a~n~g~~~----a~g~~i~~ld~D~~~~-~~~l~~~~~~~~~~~----~~~~v~~~~~~~~~~~~~~~ 503 (625)
T 2z86_A 438 K-----NKGIGSASNTAVRL----CRGFYIGQLDSDDFLE-PDAVELCLDEFRKDL----SLACVYTTNRNIDREGNLIS 503 (625)
T ss_dssp C-----CCCHHHHHHHHHHH----CCSSEEEECCTTCEEC-TTHHHHHHHHHHHCT----TCSEEEEEEEEECTTSCEEE
T ss_pred C-----CCCHHHHHHHHHHh----cCCCEEEEECCCcccC-hhHHHHHHHHHHhCC----CeeEEEeeeEEECCCCCEec
Confidence 2 36899999999998 6899999999999997 999999998885 44 57888776555443221100
Q ss_pred hh-hHHHHHHHHHhhhhccCCcccccccceEehhhhccCCCCchhhHhhhccCCCccchhhhhHHHhhhhcccccccccC
Q 005037 336 SN-SSRIFNEVELQGLDGYGCPLYTGSGCFHRREILCGSKYNKETKIEWKSKKDSKGEESLLDLEETSKALASCTYERNT 414 (717)
Q Consensus 336 ~~-~~~~f~~~~~~g~d~~~~~~~~Gtg~~~RR~aL~~~~~~~~~~~~~~~~igg~~~~~~~~~~~~~~~v~~c~Ye~~t 414 (717)
.. ....+ ..+.+...+++|++.++||+++.+ +|||++.
T Consensus 504 ~~~~~~~~------~~~~~~~~~~~~~~~~~~r~~~~~--------------~ggfd~~--------------------- 542 (625)
T 2z86_A 504 NGYNWPIY------SREKLTSAMICHHFRMFTARAWNL--------------TEGFNES--------------------- 542 (625)
T ss_dssp ECCCCSSC------CHHHHTTSCCCCSCEEEEHHHHTT--------------TTCCCSS---------------------
T ss_pred cCcccccC------CHHHHhhcccCCceEEEEHHHHHH--------------hCCCCCc---------------------
Confidence 00 00000 011122345788899999999988 8776542
Q ss_pred CcCcccccCCCCCcchHHHHHHHHhcCCeEEEeCCCCcccc--ccCCcCHHHHHHHHHHHhcchHHHH
Q 005037 415 QWGKEMGLKYGCPAEDVVTGLSIQSRGWKSVYSKPERDAFL--GVSPTTLLQLLVQHKRWSEGNFQIF 480 (717)
Q Consensus 415 ~wG~~~G~~~~svtED~~t~~rl~~~Gwrsvy~~~~~~a~~--g~aP~tl~~~~~Qr~RWa~G~lqil 480 (717)
+ ...||.++.+|+..+| +..|++.. ...+ .....+......|+.+|.....+.+
T Consensus 543 -------~---~~~eD~dl~~r~~~~g-~~~~~~~~-~~~~r~h~~~~s~~~~~~~~~~~~~~~~~~l 598 (625)
T 2z86_A 543 -------I---SNAVDYDMYLKLSEVG-PFKHINKI-CYNRVLHGENTSIKKLDIQKENHFKVVNESL 598 (625)
T ss_dssp -------C---SSCHHHHHHHHHTTTS-CEEEEEEE-EEEEECC----CCSSHHHHHHHHHHHHHHHT
T ss_pred -------c---CChHHHHHHHHHHHhC-CEEEeCCc-EEEEEECCCccchhhHHHHHHHHHHHHHHHH
Confidence 1 2469999999999999 88888753 2211 2234455566777777765544443
No 9
>3ckj_A Putative uncharacterized protein; mycobacteria, unknown function; HET: CIT; 1.80A {Mycobacterium paratuberculosis} PDB: 3ckn_A* 3cko_A* 3ckq_A* 3ckv_A* 3e26_A 3e25_A
Probab=99.66 E-value=4.8e-16 Score=166.74 Aligned_cols=124 Identities=15% Similarity=0.093 Sum_probs=92.0
Q ss_pred CCCCceEEEEecCCCCCCChHHHHHHHHHHHcCCCCCCCeEEEEEeCCCChhhHHHHHHhhcccccchhhhhhcCCCCCC
Q 005037 96 DKLPGVDIFVCTADPKIEPPMMVINTVLSVMAYDYPTDKLSVYLSDDASSDLTFYALMEASHFSTHWIPYCKKFNVEPRS 175 (717)
Q Consensus 96 ~~~P~VdV~I~t~n~~~Ep~~~v~~Tv~s~la~dYP~~kl~v~V~DDg~sd~T~~~l~ea~~fa~~w~pfc~~~~v~~r~ 175 (717)
...|.|+|+||+||+ + ..+.++|.|+++++||. ..+|+|+||||+|.|.+.+.+... ++
T Consensus 45 ~~~~~vSViIp~yN~---~-~~l~~~l~sl~~q~~~~-~~eiivVDdgS~D~t~~~~~~~~~----------~~------ 103 (329)
T 3ckj_A 45 KAGRTISVVLPALDE---E-DTIGSVIDSISPLVDGL-VDELIVLDSGSTDDTEIRAVAAGA----------RV------ 103 (329)
T ss_dssp TTTCCEEEEEEESSC---T-TTHHHHHHHHGGGBTTT-BSEEEEEECSCCSSHHHHHHHTTC----------EE------
T ss_pred ccCCcEEEEEeeCCC---H-HHHHHHHHHHHHhhCCC-CcEEEEEeCCCCchHHHHHHHhhh----------hh------
Confidence 346899999999994 3 47999999999999993 479999999999998764433210 00
Q ss_pred chhhhhHHHHHHHHHHHHHhhhcccchHHHHHhhcCcccccCCCCCCCCccceeeeecCCCCCccccccCCCCeEEEEee
Q 005037 176 PAAYFINRLYEEMENRIQTATKLGRITEEIRMKHKGFSQWDSYSSPLDHDTILQILIDGRDPNAVDNERCALPTLVYLAR 255 (717)
Q Consensus 176 p~~yf~~~~ye~~~~ri~~~~~~~~~~~~~~~~~~g~~~w~~~~~~~~h~~iv~v~~~~~~~~~~d~~g~~~P~l~yv~R 255 (717)
. +++.++.+
T Consensus 104 -------------------------------------------------~----------------------~~~~~~~~ 112 (329)
T 3ckj_A 104 -------------------------------------------------V----------------------SREQALPE 112 (329)
T ss_dssp -------------------------------------------------E----------------------EHHHHCTT
T ss_pred -------------------------------------------------c----------------------cceeeecc
Confidence 0 00111110
Q ss_pred ccCCCCCCCChHHHHHHHHHhcccCCCccEEEEEcCCCC-CCchHHHHHHHHHhh-ccCCCCeEEEEeccc
Q 005037 256 EKRPWHFQNFKAGAMNALIRVSSKISNGQVILNVDCDMY-SNNSQVVRDALCFFI-DEEKGHEVAFVQFPQ 324 (717)
Q Consensus 256 ekrp~~~~~~KAGALN~al~~s~~~t~gd~Il~lDAD~~-~~~p~~L~~~v~~f~-d~~~~~~vg~VQ~Pq 324 (717)
. + ...||++|+|.|++. ++||+|+++|+|.+ +. |++|.+++..+. ++ ++++|++..
T Consensus 113 ~--~--~n~G~~~a~n~g~~~----a~gd~i~~lD~D~~~~~-p~~l~~l~~~l~~~~----~~~~v~g~~ 170 (329)
T 3ckj_A 113 V--P--IRPGKGEALWRSLAA----SRGDIVVFVDSDLINPH-PMFVPWLVGPLLTGD----GVHLVKSFY 170 (329)
T ss_dssp S--C--CCCSHHHHHHHHHHH----CCCSEEEECCTTEESCC-TTHHHHHHHHHHSCS----SCCEEEEEE
T ss_pred C--C--CCCCHHHHHHHHHHh----CCCCEEEEECCCCCCcC-hHHHHHHHHHHHhCC----CccEEEEEe
Confidence 0 1 146899999999998 68999999999999 76 999999998865 44 577787643
No 10
>4fix_A UDP-galactofuranosyl transferase GLFT2; CAZY GT-2 family, glycosyltrans carbohydrate binding, membrane; 2.45A {Mycobacterium tuberculosis} PDB: 4fiy_A*
Probab=99.62 E-value=1.3e-15 Score=177.99 Aligned_cols=229 Identities=12% Similarity=0.051 Sum_probs=144.9
Q ss_pred CCCceEEEEecCCCCCCChHHHHHHHHHHHcCCCCCCCe-EEEEEeCCCChhhH-HHHHHhhcccccchhhhhhcCCCCC
Q 005037 97 KLPGVDIFVCTADPKIEPPMMVINTVLSVMAYDYPTDKL-SVYLSDDASSDLTF-YALMEASHFSTHWIPYCKKFNVEPR 174 (717)
Q Consensus 97 ~~P~VdV~I~t~n~~~Ep~~~v~~Tv~s~la~dYP~~kl-~v~V~DDg~sd~T~-~~l~ea~~fa~~w~pfc~~~~v~~r 174 (717)
.-|.|+|+||||| ++ +.+.++|.|+++++|+.++. +|+|+||||+|.+- ..+.|.
T Consensus 178 ~~pkVSVVIptYN---~~-~~L~~~L~SL~~qt~~~~~~~EIIVVDNgStD~s~~~~~~e~------------------- 234 (657)
T 4fix_A 178 GTANIAVGIPTFN---RP-ADCVNALRELTADPLVDQVIGAVIVPDQGERKVRDHPDFPAA------------------- 234 (657)
T ss_dssp SCCCEEEECCBSS---CH-HHHHHHHHHHTTSHHHHTTEEEEEEEECSSSCGGGSTTHHHH-------------------
T ss_pred CCCeEEEEEEecC---CH-HHHHHHHHHHHcCccccCCCCEEEEEECcCCCccchHHHHHH-------------------
Confidence 4589999999999 54 68999999999999965544 89999999997421 000000
Q ss_pred CchhhhhHHHHHHHHHHHHHhhhcccchHHHHHhhcCcccccCCCCCCCCccceeeeecCCCCCccccccCCCCeEEEEe
Q 005037 175 SPAAYFINRLYEEMENRIQTATKLGRITEEIRMKHKGFSQWDSYSSPLDHDTILQILIDGRDPNAVDNERCALPTLVYLA 254 (717)
Q Consensus 175 ~p~~yf~~~~ye~~~~ri~~~~~~~~~~~~~~~~~~g~~~w~~~~~~~~h~~iv~v~~~~~~~~~~d~~g~~~P~l~yv~ 254 (717)
++ .. .|++.++.
T Consensus 235 -----------------~~-------------~~--------------------------------------~~~I~vI~ 246 (657)
T 4fix_A 235 -----------------AA-------------RL--------------------------------------GSRLSIHD 246 (657)
T ss_dssp -----------------HH-------------HH--------------------------------------GGGEEEEE
T ss_pred -----------------HH-------------hc--------------------------------------CCCEEEEE
Confidence 00 00 02367775
Q ss_pred eccCCCCCCCChHHHHHHHHHhcccCCCccEEEEEcCCCCCCchHHHHHHHHHhhccCCCCeEEEEeccceeccCC-cc-
Q 005037 255 REKRPWHFQNFKAGAMNALIRVSSKISNGQVILNVDCDMYSNNSQVVRDALCFFIDEEKGHEVAFVQFPQNFDNVT-KN- 332 (717)
Q Consensus 255 Rekrp~~~~~~KAGALN~al~~s~~~t~gd~Il~lDAD~~~~~p~~L~~~v~~f~d~~~~~~vg~VQ~Pq~f~n~~-~~- 332 (717)
.+ ..|.|+|.|.|++.+....++|||+++|+|.++. |++|.+++.++.+.+ ++++|++.....+.. ..
T Consensus 247 ~~------N~G~a~a~N~Gl~~A~g~~~~dyIlfLD~D~~~~-pd~L~~ll~~l~~~~---~~~~vg~~il~~~~~~~~~ 316 (657)
T 4fix_A 247 QP------NLGGSGGYSRVMYEALKNTDCQQILFMDDDIRLE-PDSILRVLAMHRFAK---APMLVGGQMLNLQEPSHLH 316 (657)
T ss_dssp CC------CCHHHHHHHHHHHHHHHHCCCSEEEEECSSEEEC-THHHHHHHHHHHHBS---SCCEEEEEEEETTSTTEEC
T ss_pred CC------CCCHHHHHHHHHHHHHhcCCCCEEEEECCCCccC-hhHHHHHHHHHHhCC---CcEEEEeEEecCCCCceee
Confidence 43 2578999999999742222679999999999997 999999999987542 456665322211110 00
Q ss_pred ------h--hh--hhhHHH-----HH-------HHHHhhhh-ccCCcccccccceEehhhhccCCCCchhhHhhhccCCC
Q 005037 333 ------E--LY--SNSSRI-----FN-------EVELQGLD-GYGCPLYTGSGCFHRREILCGSKYNKETKIEWKSKKDS 389 (717)
Q Consensus 333 ------d--~~--~~~~~~-----f~-------~~~~~g~d-~~~~~~~~Gtg~~~RR~aL~~~~~~~~~~~~~~~~igg 389 (717)
+ .+ ...... |. +......+ ........|+++++||+++++ +|+
T Consensus 317 ~~g~~~~~~~~~~~~~~~~~~~~~f~~~~l~~~~~~~~~~~~~~~v~~~~g~~~lirr~v~~~--------------vGg 382 (657)
T 4fix_A 317 IMGEVVDRSIFMWTAAPHAEYDHDFAEYPLNDNNSRSKLLHRRIDVDYNGWWTCMIPRQVAEE--------------LGQ 382 (657)
T ss_dssp CSCEEEETTTTEEEECTTCCSCEETTTSCSSCSSHHHHGGGBCCCCSBCCTTEEEEEHHHHHH--------------HCS
T ss_pred ecccEeccccccccccccccccccccccccccccccccccccceeccccchhHhHhhHHHHHH--------------hCC
Confidence 0 00 000000 00 00011111 122345678899999999998 887
Q ss_pred ccchhhhhHHHhhhhcccccccccCCcCcccccCCCCCcchHHHHHHHHhcCCeEEEeCCCCcccc--c-cCC--cCHHH
Q 005037 390 KGEESLLDLEETSKALASCTYERNTQWGKEMGLKYGCPAEDVVTGLSIQSRGWKSVYSKPERDAFL--G-VSP--TTLLQ 464 (717)
Q Consensus 390 ~~~~~~~~~~~~~~~v~~c~Ye~~t~wG~~~G~~~~svtED~~t~~rl~~~Gwrsvy~~~~~~a~~--g-~aP--~tl~~ 464 (717)
+++. |. -.||++.++|+..+||+++|++.. ...+ + ..+ ..++.
T Consensus 383 fd~~----------------------------F~---~~ED~Dl~lR~~~~G~ki~~~p~a-~V~H~~~~~~~~~s~~r~ 430 (657)
T 4fix_A 383 PLPL----------------------------FI---KWDDADYGLRAAEHGYPTVTLPGA-AIWHMAWSDKDDAIDWQA 430 (657)
T ss_dssp CCSC----------------------------SS---SSHHHHHHHHHHHTTCCEEEEEEE-EEEECCSSSSCCTTSTHH
T ss_pred ChhH----------------------------hc---cCcHHHHHHHHHHcCCeEEEECCE-EEEEcCcCccccccHHHH
Confidence 7532 11 249999999999999999999853 2322 1 111 12577
Q ss_pred HHHHHHHH
Q 005037 465 LLVQHKRW 472 (717)
Q Consensus 465 ~~~Qr~RW 472 (717)
++..|.|+
T Consensus 431 Yy~~RN~l 438 (657)
T 4fix_A 431 YFHLRNRL 438 (657)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 77777775
No 11
>3l7i_A Teichoic acid biosynthesis protein F; GT-B fold, monotopic membrane protein, structural protein; 2.70A {Staphylococcus epidermidis} PDB: 3l7j_A 3l7k_A* 3l7l_A* 3l7m_A*
Probab=99.58 E-value=1.2e-16 Score=189.11 Aligned_cols=195 Identities=14% Similarity=0.095 Sum_probs=0.0
Q ss_pred CCceEEEEecCCCCCCChHHHHHHHHHHHcCCCCCCCeEEEEEeCCCChhhHHHHHHhhcccccchhhhhhcCCCCCCch
Q 005037 98 LPGVDIFVCTADPKIEPPMMVINTVLSVMAYDYPTDKLSVYLSDDASSDLTFYALMEASHFSTHWIPYCKKFNVEPRSPA 177 (717)
Q Consensus 98 ~P~VdV~I~t~n~~~Ep~~~v~~Tv~s~la~dYP~~kl~v~V~DDg~sd~T~~~l~ea~~fa~~w~pfc~~~~v~~r~p~ 177 (717)
.|.|+|+||||| ++ ..+.+||.|+++++|| .++|+|+||||+|.|.+.+.+.+ +++
T Consensus 1 Mp~vSVIIp~yN---~~-~~L~~~L~Sll~Qt~~--~~EIIVVDDgStD~t~~il~~~~----------~~~-------- 56 (729)
T 3l7i_A 1 MNKLTIIVTYYN---AE-EYITGCLESIKQQRTQ--DFNLIIVNDGSTDQSKKLMDEAI----------KDY-------- 56 (729)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred CceEEEEEEcCC---CH-HHHHHHHHHHHhCCCC--CeEEEEEECCCCCcHHHHHHHHH----------HhC--------
Confidence 378999999999 44 5899999999999999 67999999999998865433321 000
Q ss_pred hhhhHHHHHHHHHHHHHhhhcccchHHHHHhhcCcccccCCCCCCCCccceeeeecCCCCCccccccCCCCeEEEEeecc
Q 005037 178 AYFINRLYEEMENRIQTATKLGRITEEIRMKHKGFSQWDSYSSPLDHDTILQILIDGRDPNAVDNERCALPTLVYLAREK 257 (717)
Q Consensus 178 ~yf~~~~ye~~~~ri~~~~~~~~~~~~~~~~~~g~~~w~~~~~~~~h~~iv~v~~~~~~~~~~d~~g~~~P~l~yv~Rek 257 (717)
+ +++.++..++
T Consensus 57 -----------------------------------------------~----------------------~~i~~i~~~~ 67 (729)
T 3l7i_A 57 -----------------------------------------------D----------------------KNIRFIDLDE 67 (729)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred -----------------------------------------------C----------------------CCEEEEECCC
Confidence 0 1355665543
Q ss_pred CCCCCCCChHHHHHHHHHhcccCCCccEEEEEcCCCCCCchHHHHHHHHHhhccCCCCeEEEEeccceeccCCcchhhhh
Q 005037 258 RPWHFQNFKAGAMNALIRVSSKISNGQVILNVDCDMYSNNSQVVRDALCFFIDEEKGHEVAFVQFPQNFDNVTKNELYSN 337 (717)
Q Consensus 258 rp~~~~~~KAGALN~al~~s~~~t~gd~Il~lDAD~~~~~p~~L~~~v~~f~d~~~~~~vg~VQ~Pq~f~n~~~~d~~~~ 337 (717)
..|+++|+|.|++. ++||+|+++|+|.++. |++|.+++..+.++ ++.+... ..+.+.... ...
T Consensus 68 -----n~G~~~arN~gi~~----A~gdyI~flD~Dd~~~-p~~l~~l~~~l~~~----d~v~~~~-~~~~~~~~~--~~~ 130 (729)
T 3l7i_A 68 -----NSGHAHARNIALEE----VETPYFMFLDADDELA-SYAITFYLEKFNNT----DGLIAPI-HSFTTQRPQ--FVD 130 (729)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred -----CCCHHHHHHHHHHh----ccCCEEEEECCCCCCC-hhHHHHHHHHhcCC----CEEEEee-EEeecCCCc--ccc
Confidence 36799999999998 6899999999999997 99999999988843 3433322 222211110 100
Q ss_pred hHHHHHHHHHhhhhccCCc--ccccccceEehhhhccCCCCchhhHhhhccCC-CccchhhhhHHHhhhhcccccccccC
Q 005037 338 SSRIFNEVELQGLDGYGCP--LYTGSGCFHRREILCGSKYNKETKIEWKSKKD-SKGEESLLDLEETSKALASCTYERNT 414 (717)
Q Consensus 338 ~~~~f~~~~~~g~d~~~~~--~~~Gtg~~~RR~aL~~~~~~~~~~~~~~~~ig-g~~~~~~~~~~~~~~~v~~c~Ye~~t 414 (717)
........ ..+....... ...|.++++||+++.+ +| +|+
T Consensus 131 ~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~rr~~l~~--------------~gl~fd----------------------- 172 (729)
T 3l7i_A 131 LDRVRVEY-FNAKENINSFLRKQSACNIIFRTAIVRA--------------HHIRFN----------------------- 172 (729)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ccceeeee-ecchhhHHHHhhccchhheeeeHHHHHH--------------cCCCcC-----------------------
Confidence 00000000 0011111111 2356678999999987 55 343
Q ss_pred CcCcccccCCC-CCcchHHHHHHHHhcCCeEEEeCC
Q 005037 415 QWGKEMGLKYG-CPAEDVVTGLSIQSRGWKSVYSKP 449 (717)
Q Consensus 415 ~wG~~~G~~~~-svtED~~t~~rl~~~Gwrsvy~~~ 449 (717)
.+ ...||.++.+++..+|++++|+++
T Consensus 173 ---------e~~~~~ED~d~~~rl~~~g~~i~~~~~ 199 (729)
T 3l7i_A 173 ---------ENLNTYVDWSFVLEYMKYVNKFVRIFN 199 (729)
T ss_dssp ------------------------------------
T ss_pred ---------CCCCcccCHHHHHHHHHhcCCEEEecC
Confidence 33 258999999999999999999943
No 12
>2fy7_A Beta-1,4-galactosyltransferase 1; M339H mutant, APO enzyme; HET: PGE; 1.70A {Homo sapiens} PDB: 2aec_A* 2aes_A* 2ae7_A* 2ah9_A* 2agd_A* 2fya_A* 2fyb_A* 3ee5_A* 2fyc_B* 1tw1_A* 1tw5_A* 1tvy_A* 1nmm_B* 1o0r_A* 1yro_B* 1nf5_B* 1nhe_B* 1nkh_B* 1nqi_B* 1nwg_B* ...
Probab=99.47 E-value=4.7e-14 Score=148.86 Aligned_cols=138 Identities=9% Similarity=0.020 Sum_probs=89.3
Q ss_pred ChHHHHHHHH----HhcccCCCccEEEEEcCCCCCCchHHHHHHHHHhhccCCCCeEEEEeccceeccCCcchhhhhhHH
Q 005037 265 FKAGAMNALI----RVSSKISNGQVILNVDCDMYSNNSQVVRDALCFFIDEEKGHEVAFVQFPQNFDNVTKNELYSNSSR 340 (717)
Q Consensus 265 ~KAGALN~al----~~s~~~t~gd~Il~lDAD~~~~~p~~L~~~v~~f~d~~~~~~vg~VQ~Pq~f~n~~~~d~~~~~~~ 340 (717)
.|+.++|.|+ +. ++||+|+++|+|+++. |+.+. +.-. ..|..+... .+.++
T Consensus 112 ~~a~a~N~G~~~al~~----A~gd~i~flD~D~i~~-~d~~~-----~~~~---------~~p~~~~~~--~~~~~---- 166 (287)
T 2fy7_A 112 NRAKLLNVGFQEALKD----YDYTCFVFSDVDLIPM-NDHNA-----YRCF---------SQPRHISVA--MDKFG---- 166 (287)
T ss_dssp CHHHHHHHHHHHHHHH----SCCCEEEEECTTEEES-BTTSC-----CSCC---------SSCEECCCE--EGGGT----
T ss_pred chhhhhhhHHHHHHHh----CCCCEEEEECCCcccC-CCcce-----EecC---------CCCceEEEe--ecccc----
Confidence 3678899888 65 7899999999999997 87421 1100 112111100 00000
Q ss_pred HHHHHHHhhhhccCCcccccccceEehhhhccCCCCchhhHhhhccCCCccchhhhhHHHhhhhcccccccccCCcCccc
Q 005037 341 IFNEVELQGLDGYGCPLYTGSGCFHRREILCGSKYNKETKIEWKSKKDSKGEESLLDLEETSKALASCTYERNTQWGKEM 420 (717)
Q Consensus 341 ~f~~~~~~g~d~~~~~~~~Gtg~~~RR~aL~~~~~~~~~~~~~~~~igg~~~~~~~~~~~~~~~v~~c~Ye~~t~wG~~~ 420 (717)
+ . .....+.|.+.++||+++.+ +|||++.. .
T Consensus 167 --~-------~-~~~~~~~G~~~~~rr~~f~~--------------vgGFde~~-------------------------~ 197 (287)
T 2fy7_A 167 --F-------S-LPYVQYFGGVSALSKQQFLT--------------INGFPNNY-------------------------W 197 (287)
T ss_dssp --T-------S-CSSTTCCCSEEEEEHHHHHH--------------TTSCCSCC-------------------------S
T ss_pred --c-------C-CCcCceeeeEEEEEHHHHHH--------------cCCCCccc-------------------------c
Confidence 0 0 01123568889999999998 88887532 1
Q ss_pred ccCCCCCcchHHHHHHHHhcCCeEEEeCCCCccc----------cccCCcCHHHHHHHHHHHhcchHHHH
Q 005037 421 GLKYGCPAEDVVTGLSIQSRGWKSVYSKPERDAF----------LGVSPTTLLQLLVQHKRWSEGNFQIF 480 (717)
Q Consensus 421 G~~~~svtED~~t~~rl~~~Gwrsvy~~~~~~a~----------~g~aP~tl~~~~~Qr~RWa~G~lqil 480 (717)
|| -.||.++++|++.+||+..+.++....+ ....|+.++...+||.||+.+.+..+
T Consensus 198 g~----g~ED~Dl~~Rl~~~G~~i~~~~~~~~~~~~i~H~~~~~~~~n~~~~~~l~~~~~~~~~~Gl~~~ 263 (287)
T 2fy7_A 198 GW----GGEDDDIFNRLVFRGMSISRPNAVVGTTRHIRHSRDKKNEPNPQRFDRIAHTKETMLSDGLNSL 263 (287)
T ss_dssp SC----SCHHHHHHHHHHHTTCCCBCCCTTTCEEEECC---------CCCCCCCHHHHHHHTTTSSGGGC
T ss_pred cc----ccchHHHHHHHHHcCCeEEecCcccceeEEEecCCCcccCCCHHHHHHHhhcccEEcCCCcccC
Confidence 33 1599999999999999887433210001 23478899999999999999988765
No 13
>3f1y_A Mannosyl-3-phosphoglycerate synthase; GT-A type glycosyltransferase, GT-81, mannosyl-3-phosphoglyc synthase, GDP-mannose, transferas; 2.20A {Rubrobacter xylanophilus} PDB: 3kia_A* 3o3p_A*
Probab=99.47 E-value=5.4e-13 Score=146.45 Aligned_cols=122 Identities=17% Similarity=0.101 Sum_probs=88.4
Q ss_pred CCCceEEEEecCCCCCCChHHHHHHHHHHHc--CCCCCCCeEEEEEeCCCChhhHHHHHHhhcccccchhhhhhcCCCCC
Q 005037 97 KLPGVDIFVCTADPKIEPPMMVINTVLSVMA--YDYPTDKLSVYLSDDASSDLTFYALMEASHFSTHWIPYCKKFNVEPR 174 (717)
Q Consensus 97 ~~P~VdV~I~t~n~~~Ep~~~v~~Tv~s~la--~dYP~~kl~v~V~DDg~sd~T~~~l~ea~~fa~~w~pfc~~~~v~~r 174 (717)
..|.|+|+||||||+ +.+.++|.|+.+ .+||. ..+|+|+||||+|.|.+.+.+... +
T Consensus 92 ~~p~vSVVIP~yNe~----~~l~~~l~sl~~~l~~~~~-~~EIIVVDDgStD~T~~i~~~~~~----------~------ 150 (387)
T 3f1y_A 92 LGLTVSAVLPSRNVA----DTVGGIIDEIHALNERAPL-IDQILVVDADSEDGTAGVAASHGA----------E------ 150 (387)
T ss_dssp HTCCEEEEEEESSCT----TTHHHHHHHHHHHHHHSCC-CSEEEEEECSCSSSHHHHHHHTTC----------E------
T ss_pred CCCeEEEEEEcCCCH----HHHHHHHHHHHHHHhcCCC-CeEEEEEcCcCCccHHHHHHHhCc----------h------
Confidence 479999999999943 478999999987 47775 369999999999999764433210 0
Q ss_pred CchhhhhHHHHHHHHHHHHHhhhcccchHHHHHhhcCcccccCCCCCCCCccceeeeecCCCCCccccccCCCCeEEEEe
Q 005037 175 SPAAYFINRLYEEMENRIQTATKLGRITEEIRMKHKGFSQWDSYSSPLDHDTILQILIDGRDPNAVDNERCALPTLVYLA 254 (717)
Q Consensus 175 ~p~~yf~~~~ye~~~~ri~~~~~~~~~~~~~~~~~~g~~~w~~~~~~~~h~~iv~v~~~~~~~~~~d~~g~~~P~l~yv~ 254 (717)
++. +.++++.
T Consensus 151 -------------------------------------------------------v~~---------------~~~~~i~ 160 (387)
T 3f1y_A 151 -------------------------------------------------------VYS---------------ENELMSG 160 (387)
T ss_dssp -------------------------------------------------------EEE---------------GGGTTGG
T ss_pred -------------------------------------------------------hcc---------------cceeEec
Confidence 000 0000111
Q ss_pred eccCCCCCCCChHHHHHHHHHhcccCCCccEEEEEcCCCC-CCchHHHHHHHHHhhccCCCCeEEEEec
Q 005037 255 REKRPWHFQNFKAGAMNALIRVSSKISNGQVILNVDCDMY-SNNSQVVRDALCFFIDEEKGHEVAFVQF 322 (717)
Q Consensus 255 Rekrp~~~~~~KAGALN~al~~s~~~t~gd~Il~lDAD~~-~~~p~~L~~~v~~f~d~~~~~~vg~VQ~ 322 (717)
+++ ..||++|+|.|++. ++||+|+++|||.. ++ |++|.+++..+.+. +++++|.+
T Consensus 161 ~~~-----n~G~g~A~n~G~~~----A~gd~i~~lDaD~~~~~-p~~L~~l~~~l~~~---p~~d~v~G 216 (387)
T 3f1y_A 161 YGD-----AHGKGDAMWRALSV----TRGDLVLYIDADTRDFR-PQLAYGVLGPVLEV---PGVRFVKA 216 (387)
T ss_dssp GCS-----CCSHHHHHHHHTTT----CCSSEEEECCTTCSSCC-THHHHTTHHHHHHS---TTCCEEEE
T ss_pred CCc-----cCCHHHHHHHHHHh----cCCCEEEEEcCCCCcCC-HHHHHHHHHHHHHC---CCceEEEE
Confidence 222 46899999999998 68999999999999 76 99999999888532 14666655
No 14
>2nxv_A ATP synthase subunits region ORF 6; majastridin, ATPase operon, glycosyl transferase, rossmann F sulphur SAD, transferase; 1.10A {Rhodobacter blasticus} PDB: 2qgi_A*
Probab=99.17 E-value=2.1e-11 Score=125.41 Aligned_cols=51 Identities=8% Similarity=-0.013 Sum_probs=40.4
Q ss_pred hHHHHHHHHHhcccCCCccEEEEEcCCCCCCchHHHHHHHHHhhcc-CCCCeEEEEe
Q 005037 266 KAGAMNALIRVSSKISNGQVILNVDCDMYSNNSQVVRDALCFFIDE-EKGHEVAFVQ 321 (717)
Q Consensus 266 KAGALN~al~~s~~~t~gd~Il~lDAD~~~~~p~~L~~~v~~f~d~-~~~~~vg~VQ 321 (717)
.|.|+|.|++. ++|||++++|+|++++ |++|.+++..+.+. ..++++|.|.
T Consensus 62 ~a~a~N~Gi~~----A~g~yl~fln~D~~~~-~~~l~~l~~~~~~~~~~~~~vg~vg 113 (249)
T 2nxv_A 62 GFSWHKQMLPR----CKGRYVIFCHEDVELV-DRGYDDLVAAIEALEEADPKWLVAG 113 (249)
T ss_dssp TTTHHHHHGGG----CCSSEEEEEETTEECS-SCCHHHHHHHHHHHHHHCTTEEEEE
T ss_pred HHHHHHHHHHh----cCCCEEEEECCCcccC-ccHHHHHHHHHHhcccCCCCeeEEe
Confidence 36789999998 6899999999999996 99999999988740 0012577763
No 15
>2bo4_A Mannosylglycerate synthase; catalysis, glycosyltransferase, mannose, transferase, stereoselectivity; HET: FLC; 1.95A {Rhodothermus marinus} SCOP: c.68.1.18 PDB: 2bo6_A 2bo7_A* 2bo8_A* 2xw2_A 2y4j_A 2xw3_A* 2xw4_A* 2xw5_A* 2y4k_A* 2y4l_A* 2y4m_A*
Probab=98.86 E-value=4.8e-08 Score=107.35 Aligned_cols=43 Identities=16% Similarity=-0.011 Sum_probs=36.8
Q ss_pred CCChHHHHHHHH----HhcccCCCccEEEEEcCCCC-CCchHHHHHHHHHhhc
Q 005037 263 QNFKAGAMNALI----RVSSKISNGQVILNVDCDMY-SNNSQVVRDALCFFID 310 (717)
Q Consensus 263 ~~~KAGALN~al----~~s~~~t~gd~Il~lDAD~~-~~~p~~L~~~v~~f~d 310 (717)
..||++|+|.|+ +. ++||+++++|||.. .+ |+.+.+++..+.+
T Consensus 73 n~GkG~Al~~G~~~Al~~----a~gd~vv~mDADlq~~~-P~~i~~Ll~~l~~ 120 (397)
T 2bo4_A 73 RPGKGDGMNTALRYFLEE----TQWERIHFYDADITSFG-PDWITKAEEAADF 120 (397)
T ss_dssp SSSHHHHHHHHHHHHHHH----CCCSEEEECCTTCSSCC-HHHHHHHHHHHHT
T ss_pred CCCHHHHHHHHHHHHHHh----CCCCEEEEEcCCCCCCC-HHHHHHHHHHHHc
Confidence 368999999999 66 68999999999996 55 9999999887653
No 16
>2wvl_A Mannosyl-3-phosphoglycerate synthase; GT-A fold, transferase, glycosyltransferase, retaining mecha glucosyl transferase; HET: GDD; 2.81A {Thermus thermophilus} PDB: 2wvk_A* 2wvm_A*
Probab=98.20 E-value=3.7e-06 Score=89.56 Aligned_cols=44 Identities=18% Similarity=0.090 Sum_probs=37.2
Q ss_pred CCCceEEEEecCCCCCCChHHHHHHHHHHHcCCCCCCCeEEEEEeCCCChhhH
Q 005037 97 KLPGVDIFVCTADPKIEPPMMVINTVLSVMAYDYPTDKLSVYLSDDASSDLTF 149 (717)
Q Consensus 97 ~~P~VdV~I~t~n~~~Ep~~~v~~Tv~s~la~dYP~~kl~v~V~DDg~sd~T~ 149 (717)
....++|+||+|| |.. +++.+++++.|. ..+|+|+||||+|.|.
T Consensus 51 i~~klSIVVPvYN---Ee~----~lLesVl~qi~~--d~eIIlVdDGS~D~s~ 94 (391)
T 2wvl_A 51 VLEQTAIVVPTRN---ERL----KLLEGVLSGIPH--EALILVASNSSPDRFQ 94 (391)
T ss_dssp HHTTEEEEEEESS---CCH----HHHHHHHHTSCT--TSEEEEEECCCHHHHH
T ss_pred HHhceEEEEeccC---cHH----HHHHHHHhcCCC--CceEEEEECCCCCChH
Confidence 3678999999999 542 479999999976 6899999999999884
No 17
>1fo8_A Alpha-1,3-mannosyl-glycoprotein beta-1,2-N- acetylglucosaminyltransferase; methylmercury derivative, N- acetylglucosaminyltransferase I; 1.40A {Oryctolagus cuniculus} SCOP: c.68.1.10 PDB: 1fo9_A 1foa_A* 2apc_A* 2am3_A* 2am4_A* 2am5_A*
Probab=98.15 E-value=6.1e-06 Score=88.77 Aligned_cols=48 Identities=19% Similarity=0.277 Sum_probs=41.4
Q ss_pred CCceEEEEecCCCCCCChHHHHHHHHHHHcCCCCCCCeEEEEEeCCCChhhHH
Q 005037 98 LPGVDIFVCTADPKIEPPMMVINTVLSVMAYDYPTDKLSVYLSDDASSDLTFY 150 (717)
Q Consensus 98 ~P~VdV~I~t~n~~~Ep~~~v~~Tv~s~la~dYP~~kl~v~V~DDg~sd~T~~ 150 (717)
++.+.|+|+||| -| + +.+++.|+++++.+.++..|+|+|||+.+.|.+
T Consensus 1 ~~~~pViI~~yN---Rp-~-l~~~L~sL~~~~p~~~~~~iivsdDgs~~~~~~ 48 (343)
T 1fo8_A 1 LAVIPILVIACD---RS-T-VRRCLDKLLHYRPSAELFPIIVSQDCGHEETAQ 48 (343)
T ss_dssp CCCCCEEEEESS---CT-T-HHHHHHHHHHHCSCTTTSCEEEEECTTCHHHHH
T ss_pred CCcccEEEEECC---cH-H-HHHHHHHHHhcCCCcCCcEEEEEECCCCHHHHH
Confidence 356889999999 77 7 999999999999777778899999999876643
No 18
>2zu9_A Mannosyl-3-phosphoglycerate synthase; GT-A fold, glycosyltransferase, GT55, GDP, cytoplasm, magnesium, transferase; HET: GDP; 2.00A {Pyrococcus horikoshii} PDB: 2zu7_A* 2zu8_A*
Probab=98.10 E-value=9.1e-06 Score=88.50 Aligned_cols=42 Identities=17% Similarity=0.082 Sum_probs=32.5
Q ss_pred CCChHHHHHHHHHhcccCCCccEEEEEcCCCCCCchHHHHHHHHH
Q 005037 263 QNFKAGAMNALIRVSSKISNGQVILNVDCDMYSNNSQVVRDALCF 307 (717)
Q Consensus 263 ~~~KAGALN~al~~s~~~t~gd~Il~lDAD~~~~~p~~L~~~v~~ 307 (717)
++||..||-.++.++. ..++|+|+++|||-+ .|..+.+.+.-
T Consensus 142 r~GKG~Am~aGl~~A~-~~~gd~Vv~~DaDl~--iP~~v~~~~kg 183 (394)
T 2zu9_A 142 RSGKGEGMLVGLLLAK-AIGAEYVGFVDADNY--IPGAVNEYVKD 183 (394)
T ss_dssp CCSHHHHHHHHHHHHH-HTTCSEEEECCSCBS--CHHHHHHHHHH
T ss_pred cCChHHHHHHHHHHHh-hCCCCEEEEEeCCCC--CHHHHHHHHHH
Confidence 3599999999998831 018999999999994 38888776643
No 19
>3lw6_A FI08434P, beta-4-galactosyltransferase 7; protein-Mn-UDP complex, glycosyltransferase; HET: UDP; 1.81A {Drosophila melanogaster}
Probab=92.89 E-value=0.29 Score=50.63 Aligned_cols=141 Identities=17% Similarity=0.146 Sum_probs=85.8
Q ss_pred CChHHHHHHHHHhcccCCCccEEEEEcCCCCCCchHHHHHHHHHhhccCCCCeEEEEeccceeccCCcchhhhhhHHHHH
Q 005037 264 NFKAGAMNALIRVSSKISNGQVILNVDCDMYSNNSQVVRDALCFFIDEEKGHEVAFVQFPQNFDNVTKNELYSNSSRIFN 343 (717)
Q Consensus 264 ~~KAGALN~al~~s~~~t~gd~Il~lDAD~~~~~p~~L~~~v~~f~d~~~~~~vg~VQ~Pq~f~n~~~~d~~~~~~~~f~ 343 (717)
-.||..||.|...+ +.+.|++++-|.|.+|.|+.-+ |-.++. ..|.... .++.. |
T Consensus 97 FNRa~LlNvGf~ea--~~~~d~~ifHDVDLlP~dd~n~-----Y~c~~~--------~~P~Hls-~~~~~---------~ 151 (287)
T 3lw6_A 97 FNRASLINVGFQFA--SDVYDYIAMHDVDLLPLNDNLL-----YEYPSS--------LGPLHIA-GPKLH---------P 151 (287)
T ss_dssp CCHHHHHHHHHHHS--CTTCCEEEEECTTEEECCTTSC-----CCCCCT--------TCCEESS-CTTTC---------S
T ss_pred cchhheecccHHHH--hccCCEEEEecccccccCCCcc-----ccCCCC--------CCceEEe-ecccc---------C
Confidence 34888999999875 2457999999999999843210 111100 1232211 11110 0
Q ss_pred HHHHhhhhccCCcccccccceEehhhhccCCCCchhhHhhhccCCCccchhhhhHHHhhhhcccccccccCCcCcccccC
Q 005037 344 EVELQGLDGYGCPLYTGSGCFHRREILCGSKYNKETKIEWKSKKDSKGEESLLDLEETSKALASCTYERNTQWGKEMGLK 423 (717)
Q Consensus 344 ~~~~~g~d~~~~~~~~Gtg~~~RR~aL~~~~~~~~~~~~~~~~igg~~~~~~~~~~~~~~~v~~c~Ye~~t~wG~~~G~~ 423 (717)
.....-+.|....++|+.+.. +|||++.. | ||-
T Consensus 152 --------~~~Y~~~~GGv~a~~re~f~k--------------VNGFsn~f---------------------~----GWG 184 (287)
T 3lw6_A 152 --------KYHYDNFVGGILLVRREHFKQ--------------MNGMSNQY---------------------W----GWG 184 (287)
T ss_dssp --------SCCCTTCCCSEEEEEHHHHHH--------------TTSCCSCC---------------------C----SSS
T ss_pred --------CCCcCCccccEEeccHHHHHH--------------cCCCCCcC---------------------c----CCC
Confidence 011233677788899998888 88887532 2 442
Q ss_pred CCCCcchHHHHHHHHhcCCeEEEeCCC---C-cccc---------ccCCcCHHHHHHHHHHHhcchHHHH
Q 005037 424 YGCPAEDVVTGLSIQSRGWKSVYSKPE---R-DAFL---------GVSPTTLLQLLVQHKRWSEGNFQIF 480 (717)
Q Consensus 424 ~~svtED~~t~~rl~~~Gwrsvy~~~~---~-~a~~---------g~aP~tl~~~~~Qr~RWa~G~lqil 480 (717)
.||.+...|+...|.++.-.... + ..+. ...|......-.+++||..+.+..+
T Consensus 185 ----gEDdD~~~Rl~~~G~~i~Rp~~~~~gry~m~~H~hd~~~r~rd~~k~~~~~~~~~~r~~~dGLnsl 250 (287)
T 3lw6_A 185 ----LEDDEFFVRIRDAGLQVTRPQNIKTGTNDTFSHIHNRYHRKRDTQKCFNQKEMTRKRDHKTGLDNV 250 (287)
T ss_dssp ----SHHHHHHHHHHHTTCCCBCCSSCCCCTTTSEEECCCTTTSCCCCCCCTTHHHHHTSCCSSCSGGGC
T ss_pred ----ccchHHHHHHHHcCCcEEcCCCccccceeEEeccccccccCCcccchhhhhhhhcEEccCCCCeee
Confidence 69999999999999987654320 0 0111 1234455566778889988887665
No 20
>2j0a_A Beta-1,3-N-acetylglucosaminyltransferase manic FR; glycosyltransferase, developmental protein, transmembrane, G apparatus, notch signaling; 1.8A {Mus musculus} PDB: 2j0b_A*
Probab=53.00 E-value=24 Score=36.19 Aligned_cols=37 Identities=24% Similarity=0.231 Sum_probs=26.7
Q ss_pred CCccEEEEEcCCCCCCchHHHHHHHHHhhccCCCCeEEE
Q 005037 281 SNGQVILNVDCDMYSNNSQVVRDALCFFIDEEKGHEVAF 319 (717)
Q Consensus 281 t~gd~Il~lDAD~~~~~p~~L~~~v~~f~d~~~~~~vg~ 319 (717)
.+.+.++..|.|++++ .+-|.+.+..+ |+...--+|.
T Consensus 92 ~~~~Wf~~~DDDtyv~-~~nL~~~L~~~-d~~~~~YiG~ 128 (280)
T 2j0a_A 92 SGLRWFCHVDDDNYVN-PKALLQLLKTF-PQDRDVYVGK 128 (280)
T ss_dssp HTCSEEEEEETTEEEC-HHHHHHHHTTS-CTTSCCEEEC
T ss_pred CCCcEEEEeCCCcEEc-HHHHHHHHHhC-CCCCCEEEEE
Confidence 4899999999999997 88888777654 4433333443
No 21
>3oam_A 3-deoxy-manno-octulosonate cytidylyltransferase; center for structural genomics of infectious diseases; 1.75A {Vibrio cholerae o1 biovar el tor} SCOP: c.68.1.13
Probab=38.41 E-value=1.5e+02 Score=29.10 Aligned_cols=45 Identities=11% Similarity=0.130 Sum_probs=30.7
Q ss_pred CChHHHHHHHHHhcccCCCccEEEEEcCCC-CCCchHHHHHHHHHhhcc
Q 005037 264 NFKAGAMNALIRVSSKISNGQVILNVDCDM-YSNNSQVVRDALCFFIDE 311 (717)
Q Consensus 264 ~~KAGALN~al~~s~~~t~gd~Il~lDAD~-~~~~p~~L~~~v~~f~d~ 311 (717)
.|.+++. .+++... ..+.|.++++++|+ ... ++.+++++..+.+.
T Consensus 74 ~Gt~~~~-~~~~~l~-~~~~d~vlv~~gD~Pli~-~~~i~~l~~~~~~~ 119 (252)
T 3oam_A 74 SGTERLA-EVVAKMA-IPADHIVVNVQGDEPLIP-PAIIRQVADNLAAC 119 (252)
T ss_dssp SHHHHHH-HHHHHTT-CCTTSEEEECCTTCTTCC-HHHHHHHHHHHHHS
T ss_pred CcHHHHH-HHHHhcC-cCCCCEEEEEeCCeeecC-HHHHHHHHHHHHhc
Confidence 4566643 3444310 12578999999999 454 99999999888753
No 22
>3tqd_A 3-deoxy-manno-octulosonate cytidylyltransferase; cell envelope; 1.80A {Coxiella burnetii} SCOP: c.68.1.0
Probab=34.62 E-value=1.8e+02 Score=28.89 Aligned_cols=45 Identities=7% Similarity=-0.006 Sum_probs=31.3
Q ss_pred CChHHHHHHHHHhcccCCCccEEEEEcCCCCCCchHHHHHHHHHhhc
Q 005037 264 NFKAGAMNALIRVSSKISNGQVILNVDCDMYSNNSQVVRDALCFFID 310 (717)
Q Consensus 264 ~~KAGALN~al~~s~~~t~gd~Il~lDAD~~~~~p~~L~~~v~~f~d 310 (717)
.|.++ +..+++... ..+.|.++++++|+-.-+++.+++++..+.+
T Consensus 81 ~Gt~~-i~~a~~~l~-~~~~d~vlv~~gD~Pli~~~~i~~li~~~~~ 125 (256)
T 3tqd_A 81 SGTER-IAEAAVALG-FEDDEIIVCLQGDEPLIPPDAIRKLAEDLDE 125 (256)
T ss_dssp SHHHH-HHHHHHHTT-CCTTCEEEEECTTCCCCCHHHHHHHHHHHHH
T ss_pred CcHHH-HHHHHHHhC-cCCCCEEEEEeCCcccCCHHHHHHHHHHHHh
Confidence 34554 556666521 1257999999999943349999999988864
No 23
>3q80_A 2-C-methyl-D-erythritol 4-phosphate cytidyltransf; TB structural genomics consortium, TBSGC, rossman fold; HET: CDM; 2.00A {Mycobacterium tuberculosis} SCOP: c.68.1.0 PDB: 3q7u_A* 3okr_A 2xwn_A*
Probab=32.34 E-value=87 Score=30.81 Aligned_cols=45 Identities=16% Similarity=0.153 Sum_probs=31.8
Q ss_pred hHHHHHHHHHhcccCCCccEEEEEcCCCCCCchHHHHHHHHHhhc
Q 005037 266 KAGAMNALIRVSSKISNGQVILNVDCDMYSNNSQVVRDALCFFID 310 (717)
Q Consensus 266 KAGALN~al~~s~~~t~gd~Il~lDAD~~~~~p~~L~~~v~~f~d 310 (717)
...++-+|++......+.++++++|||+=.-+++.+++++..+.+
T Consensus 83 r~~sv~~gl~~~~~~~~~d~Vlv~~~d~Pli~~~~i~~li~~~~~ 127 (231)
T 3q80_A 83 RTDTVNLALTVLSGTAEPEFVLVHDAARALTPPALVARVVEALRD 127 (231)
T ss_dssp HHHHHHHHHGGGC---CCSEEEECCTTCTTCCHHHHHHHHHHHHT
T ss_pred hHHHHHHHHHHhhhcCCCCEEEEEcCCcCCCCHHHHHHHHHHHhh
Confidence 356677777753111125899999999755569999999988875
No 24
>3d5n_A Q97W15_sulso; NESG, SSR125, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium; 2.80A {Sulfolobus solfataricus}
Probab=30.41 E-value=1e+02 Score=29.00 Aligned_cols=41 Identities=15% Similarity=0.144 Sum_probs=32.1
Q ss_pred CChHHHHHHHHHhcccCCCccEEEEEcCCC-CCCchHHHHHHHHHh
Q 005037 264 NFKAGAMNALIRVSSKISNGQVILNVDCDM-YSNNSQVVRDALCFF 308 (717)
Q Consensus 264 ~~KAGALN~al~~s~~~t~gd~Il~lDAD~-~~~~p~~L~~~v~~f 308 (717)
.+-++++..|++.. .+.|.+++++||+ .++ ++.+++++..+
T Consensus 71 ~G~~~si~~al~~~---~~~~~vlv~~~D~P~i~-~~~i~~l~~~~ 112 (197)
T 3d5n_A 71 EGISTSLKLGLRFF---KDYDAVLVALGDMPFVT-KEDVNKIINTF 112 (197)
T ss_dssp GCHHHHHHHHHHHT---TTSSEEEEEETTCCCSC-HHHHHHHHHTC
T ss_pred CCHHHHHHHHHHhh---ccCCcEEEEeCCccccC-HHHHHHHHHHh
Confidence 35678888888873 2348999999999 555 89999988776
No 25
>2c0n_A A197; thermophil protein, thermophilic virus, STIV, sulfolobus turreted ICOS virus; 1.86A {Sulfolobus turreted icosahedral virus}
Probab=27.04 E-value=47 Score=32.45 Aligned_cols=38 Identities=13% Similarity=0.076 Sum_probs=25.9
Q ss_pred HHHHHHHHHhcccCCCccEEEEEcCC---CCCCchHHHHHHH
Q 005037 267 AGAMNALIRVSSKISNGQVILNVDCD---MYSNNSQVVRDAL 305 (717)
Q Consensus 267 AGALN~al~~s~~~t~gd~Il~lDAD---~~~~~p~~L~~~v 305 (717)
+-|-|.++..--...++++++++||| .--+ |+.+.+++
T Consensus 38 ~raRN~lv~~Fl~~~~~dhllfIDAD~~~I~Fd-Pe~V~rLl 78 (203)
T 2c0n_A 38 AVQREIALDMFLEMKDYDTLAFLDEDVVPIEID-FQKVEAKF 78 (203)
T ss_dssp HHHHHHHHHHHHHCTTCCEEEEECTTEEEEECC-HHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCCCEEEEEeCCCCccccC-HHHHHHHH
Confidence 34445444321112678999999999 7775 99888877
No 26
>2xwl_A 2-C-methyl-D-erythritol 4-phosphate cytidylyltran; transferase, MEP pathway; HET: CTP; 1.49A {Mycobacterium smegmatis} PDB: 2xwm_A*
Probab=24.47 E-value=1.4e+02 Score=28.19 Aligned_cols=40 Identities=5% Similarity=0.171 Sum_probs=32.0
Q ss_pred ChHHHHHHHHHhcccCCCccEEEEEcCCC-CCCchHHHHHHHHHh
Q 005037 265 FKAGAMNALIRVSSKISNGQVILNVDCDM-YSNNSQVVRDALCFF 308 (717)
Q Consensus 265 ~KAGALN~al~~s~~~t~gd~Il~lDAD~-~~~~p~~L~~~v~~f 308 (717)
..++++..|++.. .+.+.+++++||+ ..+ ++.+++++..+
T Consensus 78 ~~~~~i~~al~~~---~~~~~vlv~~~D~P~~~-~~~i~~l~~~~ 118 (223)
T 2xwl_A 78 DRTESVALALEAA---GDAEFVLVHDAARALTP-PALIARVVAAL 118 (223)
T ss_dssp SHHHHHHHHHTTC---TTCSEEEECCTTCTTCC-HHHHHHHHHHH
T ss_pred CHHHHHHHHHHhc---CCCCEEEEEcCCcccCC-HHHHHHHHHHH
Confidence 3678888888763 2578999999999 454 88999999877
No 27
>2y6p_A 3-deoxy-manno-octulosonate cytidylyltransferase; lipid A; HET: CTP; 2.10A {Aquifex aeolicus}
Probab=20.13 E-value=1.1e+02 Score=29.33 Aligned_cols=42 Identities=10% Similarity=0.089 Sum_probs=32.2
Q ss_pred CChHHHHHHHHHhcccCCCccEEEEEcCCC-CCCchHHHHHHHHHhhcc
Q 005037 264 NFKAGAMNALIRVSSKISNGQVILNVDCDM-YSNNSQVVRDALCFFIDE 311 (717)
Q Consensus 264 ~~KAGALN~al~~s~~~t~gd~Il~lDAD~-~~~~p~~L~~~v~~f~d~ 311 (717)
.+.+++++ +++. .+.|.+++++||+ ..+ ++.+++++..+.+.
T Consensus 72 ~g~~~~~~-~~~~----~~~~~vlv~~~D~P~~~-~~~i~~l~~~~~~~ 114 (234)
T 2y6p_A 72 SGSDRVLY-VVRD----LDVDLIINYQGDEPFVY-EEDIKLIFRELEKG 114 (234)
T ss_dssp SHHHHHHH-HHTT----CCCSEEEECCTTCCCCC-HHHHHHHHHHHHHT
T ss_pred cchHHHHH-HHHh----CCCCEEEEecCCcCcCC-HHHHHHHHHHHHhC
Confidence 56777774 5554 3578999999999 775 89999999887653
Done!