BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 005038
(717 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3RGX|A Chain A, Structural Insight Into Brassinosteroid Perception By Bri1
pdb|3RGZ|A Chain A, Structural Insight Into Brassinosteroid Perception By Bri1
Length = 768
Score = 208 bits (530), Expect = 7e-54, Method: Compositional matrix adjust.
Identities = 207/710 (29%), Positives = 318/710 (44%), Gaps = 101/710 (14%)
Query: 1 MSSCEVNGVVRSQGLCSLVHLQELYIASNDLRGSLPW--CMANMTSLRILDVSSNQLTGS 58
+S+ +NG V G L L ++ N L G + + + + L+ L+VSSN L
Sbjct: 84 LSNSHINGSV--SGFKCSASLTSLDLSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTLDFP 141
Query: 59 ISSSPLVHLTSIEELMLSNNYFQIPISLEPLFN--YSRLKIFNAENNEIKAEITESHSLI 116
S + L S+E L LS N + + + LK N+I ++ S +
Sbjct: 142 GKVSGGLKLNSLEVLDLSANSISGANVVGWVLSDGCGELKHLAISGNKISGDVDVSRCV- 200
Query: 117 APKFQLNTLSLSS-NYGDGFIFPKFLYHQHDLEYVDLSHIKMNGEFPNWLLENNTKLETL 175
L L +SS N+ G FL L+++D+S K++G+F + + T+L+ L
Sbjct: 201 ----NLEFLDVSSNNFSTGI---PFLGDCSALQHLDISGNKLSGDF-SRAISTCTELKLL 252
Query: 176 FLVNDSLAGPFRLPIHSHKRLRQLDVSNNNIRGHIPVKIGDVLPSLYVFNNSMNALDGSI 235
+ ++ GP +P K L+ L ++ N G IP + +L + S N G++
Sbjct: 253 NISSNQFVGP--IPPLPLKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAV 310
Query: 236 PSSFG-------------------------NMKFLQILDLSNNHLTGEIPEHLAVGCVNL 270
P FG M+ L++LDLS N +GE+PE L +L
Sbjct: 311 PPFFGSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASL 370
Query: 271 QFLALSNNNLQGHLFSRNFNLT-----NLQWLQLEGNRFVGEIPQSLSKCSSLEGLYLNN 325
L LS+NN G + NL LQ L L+ N F G+IP +LS CS L L+L+
Sbjct: 371 LTLDLSSNNFSGPILP---NLCQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSF 427
Query: 326 NSLLGKIPRWLGNLTRLQYIIMPNNHLEGPIPVEFCQLDSLQILDISDNNISGSLPSCFH 385
N L G IP LG+L++L+ + + N LEG IP E + +L+ L + N+++G +PS
Sbjct: 428 NYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLS 487
Query: 386 PLSIKQVHLSKNMLHGQLKRGTFFNCSSLVTLDLSYNRLNGSIPDWVDGLSQLSHLILGH 445
NC++L + LS NRL G IP W+ L L+ L L +
Sbjct: 488 ------------------------NCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSN 523
Query: 446 NNLEGEVSVXXXXXXXXXXXXXXXXXXHGPIPPCF--------DNTTLHESYSNSSSPDE 497
N+ G + +G IP N + Y +
Sbjct: 524 NSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGM 583
Query: 498 QFEIFFSIEGHQGFLEKQ---NHEIFEFTTKN----IAYIYQGKVLSLLSG------LDL 544
+ E G LE Q + ++ +T+N + +Y G LD+
Sbjct: 584 KKE----CHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDM 639
Query: 545 SCNKLIGHIPPQIGNLTRIQTLNLSHNNLTGSIPSTFSNLKHVESLDLSNNKLNGKIPHQ 604
S N L G+IP +IG++ + LNL HN+++GSIP +L+ + LDLS+NKL+G+IP
Sbjct: 640 SYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQA 699
Query: 605 LVELKTLEVFSVAYNNLSGEIPEWKAQFATFNESSYEGNTFLCGLPLPIC 654
+ L L ++ NNLSG IPE QF TF + + N LCG PLP C
Sbjct: 700 MSALTMLTEIDLSNNNLSGPIPEM-GQFETFPPAKFLNNPGLCGYPLPRC 748
Score = 108 bits (271), Expect = 7e-24, Method: Compositional matrix adjust.
Identities = 125/453 (27%), Positives = 200/453 (44%), Gaps = 57/453 (12%)
Query: 231 LDGSIPSSFGNMKFLQILDLSNNHLTGEIPEHLAVG-CVNLQFLALSNNNLQGHLFSRNF 289
++GS+ S F L LDLS N L+G + ++G C L+FL +S+N L
Sbjct: 89 INGSV-SGFKCSASLTSLDLSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTLD-------- 139
Query: 290 NLTNLQWLQLEGNRFVGEIPQSLSKCSSLEGLYLNNNSLLGK-IPRWL--GNLTRLQYII 346
F G++ L K +SLE L L+ NS+ G + W+ L+++
Sbjct: 140 --------------FPGKVSGGL-KLNSLEVLDLSANSISGANVVGWVLSDGCGELKHLA 184
Query: 347 MPNNHLEGPIPVEFCQLDSLQILDISDNNISGSLPSCFHPLSIKQVHLSKNMLHGQLKRG 406
+ N + G + V C +L+ LD+S NN S +P +++ + +S N L G R
Sbjct: 185 ISGNKISGDVDVSRCV--NLEFLDVSSNNFSTGIPFLGDCSALQHLDISGNKLSGDFSR- 241
Query: 407 TFFNCSSLVTLDLSYNRLNGSIPDWVDGLSQLSHLILGHNNLEGEV-SVXXXXXXXXXXX 465
C+ L L++S N+ G IP L L +L L N GE+
Sbjct: 242 AISTCTELKLLNISSNQFVGPIPPLP--LKSLQYLSLAENKFTGEIPDFLSGACDTLTGL 299
Query: 466 XXXXXXXHGPIPPCFDNTTLHESYS---NSSSPDEQFEIFFSIEGHQGF---LEKQNHEI 519
+G +PP F + +L ES + N+ S + + + G + + + E+
Sbjct: 300 DLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGEL 359
Query: 520 FEFTTKNIAYI---------YQGKVL--------SLLSGLDLSCNKLIGHIPPQIGNLTR 562
E T A + + G +L + L L L N G IPP + N +
Sbjct: 360 PESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNCSE 419
Query: 563 IQTLNLSHNNLTGSIPSTFSNLKHVESLDLSNNKLNGKIPHQLVELKTLEVFSVAYNNLS 622
+ +L+LS N L+G+IPS+ +L + L L N L G+IP +L+ +KTLE + +N+L+
Sbjct: 420 LVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLT 479
Query: 623 GEIPEWKAQFATFNESSYEGNTFLCGLPLPICR 655
GEIP + N S N +P I R
Sbjct: 480 GEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGR 512
>pdb|3RIZ|A Chain A, Crystal Structure Of The Plant Steroid Receptor Bri1
Ectodomain
pdb|3RJ0|A Chain A, Plant Steroid Receptor Bri1 Ectodomain In Complex With
Brassinolide
Length = 772
Score = 207 bits (528), Expect = 1e-53, Method: Compositional matrix adjust.
Identities = 207/708 (29%), Positives = 319/708 (45%), Gaps = 97/708 (13%)
Query: 1 MSSCEVNGVVRSQGLCSLVHLQELYIASNDLRGSLPW--CMANMTSLRILDVSSNQLTGS 58
+S+ +NG V G L L ++ N L G + + + + L+ L+VSSN L
Sbjct: 81 LSNSHINGSV--SGFKCSASLTSLDLSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTLDFP 138
Query: 59 ISSSPLVHLTSIEELMLSNNYFQIPISLEPLFN--YSRLKIFNAENNEIKAEITESHSLI 116
S + L S+E L LS N + + + LK N+I ++ S +
Sbjct: 139 GKVSGGLKLNSLEVLDLSANSISGANVVGWVLSDGCGELKHLAISGNKISGDVDVSRCV- 197
Query: 117 APKFQLNTLSLSS-NYGDGFIFPKFLYHQHDLEYVDLSHIKMNGEFPNWLLENNTKLETL 175
L L +SS N+ G FL L+++D+S K++G+F + + T+L+ L
Sbjct: 198 ----NLEFLDVSSNNFSTGI---PFLGDCSALQHLDISGNKLSGDF-SRAISTCTELKLL 249
Query: 176 FLVNDSLAGPFRLPIHSHKRLRQLDVSNNNIRGHIPVKIGDVLPSLYVFNNSMNALDGSI 235
+ ++ GP +P K L+ L ++ N G IP + +L + S N G++
Sbjct: 250 NISSNQFVGP--IPPLPLKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAV 307
Query: 236 PSSFG-------------------------NMKFLQILDLSNNHLTGEIPEHLAVGCVNL 270
P FG M+ L++LDLS N +GE+PE L +L
Sbjct: 308 PPFFGSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASL 367
Query: 271 QFLALSNNNLQGHL---FSRNFNLTNLQWLQLEGNRFVGEIPQSLSKCSSLEGLYLNNNS 327
L LS+NN G + +N T LQ L L+ N F G+IP +LS CS L L+L+ N
Sbjct: 368 LTLDLSSNNFSGPILPNLCQNPKNT-LQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNY 426
Query: 328 LLGKIPRWLGNLTRLQYIIMPNNHLEGPIPVEFCQLDSLQILDISDNNISGSLPSCFHPL 387
L G IP LG+L++L+ + + N LEG IP E + +L+ L + N+++G +PS
Sbjct: 427 LSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLS-- 484
Query: 388 SIKQVHLSKNMLHGQLKRGTFFNCSSLVTLDLSYNRLNGSIPDWVDGLSQLSHLILGHNN 447
NC++L + LS NRL G IP W+ L L+ L L +N+
Sbjct: 485 ----------------------NCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNS 522
Query: 448 LEGEVSVXXXXXXXXXXXXXXXXXXHGPIPPCF--------DNTTLHESYSNSSSPDEQF 499
G + +G IP N + Y + +
Sbjct: 523 FSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKK 582
Query: 500 EIFFSIEGHQGFLEKQ---NHEIFEFTTKN----IAYIYQGKVLSLLSG------LDLSC 546
E G LE Q + ++ +T+N + +Y G LD+S
Sbjct: 583 E----CHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSY 638
Query: 547 NKLIGHIPPQIGNLTRIQTLNLSHNNLTGSIPSTFSNLKHVESLDLSNNKLNGKIPHQLV 606
N L G+IP +IG++ + LNL HN+++GSIP +L+ + LDLS+NKL+G+IP +
Sbjct: 639 NMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMS 698
Query: 607 ELKTLEVFSVAYNNLSGEIPEWKAQFATFNESSYEGNTFLCGLPLPIC 654
L L ++ NNLSG IPE QF TF + + N LCG PLP C
Sbjct: 699 ALTMLTEIDLSNNNLSGPIPEM-GQFETFPPAKFLNNPGLCGYPLPRC 745
Score = 108 bits (270), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 125/453 (27%), Positives = 200/453 (44%), Gaps = 57/453 (12%)
Query: 231 LDGSIPSSFGNMKFLQILDLSNNHLTGEIPEHLAVG-CVNLQFLALSNNNLQGHLFSRNF 289
++GS+ S F L LDLS N L+G + ++G C L+FL +S+N L
Sbjct: 86 INGSV-SGFKCSASLTSLDLSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTLD-------- 136
Query: 290 NLTNLQWLQLEGNRFVGEIPQSLSKCSSLEGLYLNNNSLLGK-IPRWL--GNLTRLQYII 346
F G++ L K +SLE L L+ NS+ G + W+ L+++
Sbjct: 137 --------------FPGKVSGGL-KLNSLEVLDLSANSISGANVVGWVLSDGCGELKHLA 181
Query: 347 MPNNHLEGPIPVEFCQLDSLQILDISDNNISGSLPSCFHPLSIKQVHLSKNMLHGQLKRG 406
+ N + G + V C +L+ LD+S NN S +P +++ + +S N L G R
Sbjct: 182 ISGNKISGDVDVSRCV--NLEFLDVSSNNFSTGIPFLGDCSALQHLDISGNKLSGDFSR- 238
Query: 407 TFFNCSSLVTLDLSYNRLNGSIPDWVDGLSQLSHLILGHNNLEGEV-SVXXXXXXXXXXX 465
C+ L L++S N+ G IP L L +L L N GE+
Sbjct: 239 AISTCTELKLLNISSNQFVGPIPPLP--LKSLQYLSLAENKFTGEIPDFLSGACDTLTGL 296
Query: 466 XXXXXXXHGPIPPCFDNTTLHESYS---NSSSPDEQFEIFFSIEGHQGF---LEKQNHEI 519
+G +PP F + +L ES + N+ S + + + G + + + E+
Sbjct: 297 DLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGEL 356
Query: 520 FEFTTKNIAYI---------YQGKVL--------SLLSGLDLSCNKLIGHIPPQIGNLTR 562
E T A + + G +L + L L L N G IPP + N +
Sbjct: 357 PESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNCSE 416
Query: 563 IQTLNLSHNNLTGSIPSTFSNLKHVESLDLSNNKLNGKIPHQLVELKTLEVFSVAYNNLS 622
+ +L+LS N L+G+IPS+ +L + L L N L G+IP +L+ +KTLE + +N+L+
Sbjct: 417 LVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLT 476
Query: 623 GEIPEWKAQFATFNESSYEGNTFLCGLPLPICR 655
GEIP + N S N +P I R
Sbjct: 477 GEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGR 509
>pdb|1OGQ|A Chain A, The Crystal Structure Of Pgip (Polygalacturonase
Inhibiting Protein), A Leucine Rich Repeat Protein
Involved In Plant Defense
Length = 313
Score = 77.4 bits (189), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 64/231 (27%), Positives = 95/231 (41%), Gaps = 59/231 (25%)
Query: 474 GPIPPCFDN-TTLHESYSNSSSPDEQFEIFFSIEGHQGFLEKQNHEIFEFTTKNIAYIYQ 532
GPIPP T LH Y ++ F S + + +F+ ++
Sbjct: 91 GPIPPAIAKLTQLHYLYITHTNVSGAIPDFLS--------QIKTLVTLDFSYNALSGTLP 142
Query: 533 GKVLSL--LSGLDLSCNKLIGHIPPQIGNLTRIQT-LNLSHNNLTGSIPSTFSNL----- 584
+ SL L G+ N++ G IP G+ +++ T + +S N LTG IP TF+NL
Sbjct: 143 PSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLNLAFV 202
Query: 585 -----------------------------------------KHVESLDLSNNKLNGKIPH 603
K++ LDL NN++ G +P
Sbjct: 203 DLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDLGKVGLSKNLNGLDLRNNRIYGTLPQ 262
Query: 604 QLVELKTLEVFSVAYNNLSGEIPEWKAQFATFNESSYEGNTFLCGLPLPIC 654
L +LK L +V++NNL GEIP+ F+ S+Y N LCG PLP C
Sbjct: 263 GLTQLKFLHSLNVSFNNLCGEIPQ-GGNLQRFDVSAYANNKCLCGSPLPAC 312
Score = 74.3 bits (181), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 83/294 (28%), Positives = 125/294 (42%), Gaps = 64/294 (21%)
Query: 308 IPQSLSKCSSLEGLYLNN-NSLLGKIPRWLGNLTRLQYIIMPNNHLEGPIPVEFCQLDSL 366
IP SL+ L LY+ N+L+G IP + LT+L Y+ + + ++ G IP Q+ +L
Sbjct: 68 IPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTL 127
Query: 367 QILDISDNNISGSLPSCFHPLSIKQVHLSKNMLHGQLKRGTFFNCSSLVTLDLSYNRLNG 426
LD S N +SG+LP L +LV + NR++G
Sbjct: 128 VTLDFSYNALSGTLPPSISSL------------------------PNLVGITFDGNRISG 163
Query: 427 SIPDWVDGLSQL-SHLILGHNNLEGEVSVXXXXXXXXXXXXXXXXXXHGPIPPCFDNTTL 485
+IPD S+L + + + N L G+ IPP F N L
Sbjct: 164 AIPDSYGSFSKLFTSMTISRNRLTGK------------------------IPPTFANLNL 199
Query: 486 H-ESYSNSSSPDEQFEIFFSIEGHQGFLEKQNHEIFEFTTKNIAYIYQGKV-LSL-LSGL 542
S + + +F S + Q +N F+ GKV LS L+GL
Sbjct: 200 AFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDL----------GKVGLSKNLNGL 249
Query: 543 DLSCNKLIGHIPPQIGNLTRIQTLNLSHNNLTGSIPSTFSNLKHVESLDLSNNK 596
DL N++ G +P + L + +LN+S NNL G IP NL+ + +NNK
Sbjct: 250 DLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQG-GNLQRFDVSAYANNK 302
Score = 73.6 bits (179), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 67/216 (31%), Positives = 98/216 (45%), Gaps = 28/216 (12%)
Query: 170 TKLETLFLVNDSLAGPFRLPIHSHKRLRQLDVSNNNIRGHIPVKIGDVLPSLYVFNNSMN 229
T+L L++ + +++G + K L LD S N + G +P I LP+L N
Sbjct: 101 TQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISS-LPNLVGITFDGN 159
Query: 230 ALDGSIPSSFGNM-KFLQILDLSNNHLTGEIPEHLAVGCVNLQFLALSNNNLQGH---LF 285
+ G+IP S+G+ K + +S N LTG+IP A +NL F+ LS N L+G LF
Sbjct: 160 RISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFAN--LNLAFVDLSRNMLEGDASVLF 217
Query: 286 SRNFNL--------------------TNLQWLQLEGNRFVGEIPQSLSKCSSLEGLYLNN 325
+ N NL L L NR G +PQ L++ L L ++
Sbjct: 218 GSDKNTQKIHLAKNSLAFDLGKVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSF 277
Query: 326 NSLLGKIPRWLGNLTRLQYIIMPNNHLEGPIPVEFC 361
N+L G+IP+ GNL R NN P+ C
Sbjct: 278 NNLCGEIPQG-GNLQRFDVSAYANNKCLCGSPLPAC 312
Score = 68.2 bits (165), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 68/242 (28%), Positives = 99/242 (40%), Gaps = 49/242 (20%)
Query: 235 IPSSFGNMKFLQILDLSN-NHLTGEIPEHLAVGCVNLQFLALSNNNLQGHLFSRNFNLTN 293
IPSS N+ +L L + N+L G IP +A LT
Sbjct: 68 IPSSLANLPYLNFLYIGGINNLVGPIPPAIA-------------------------KLTQ 102
Query: 294 LQWLQLEGNRFVGEIPQSLSKCSSLEGLYLNNNSLLGKIPRWLGNLTRLQYIIMPNNHLE 353
L +L + G IP LS+ +L L + N+L G +P + +L L I N +
Sbjct: 103 LHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRIS 162
Query: 354 GPIPVEFCQLDSL-QILDISDNNISGSLPSCFHPLSIKQVHLSKNMLHGQ---------- 402
G IP + L + IS N ++G +P F L++ V LS+NML G
Sbjct: 163 GAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLNLAFVDLSRNMLEGDASVLFGSDKN 222
Query: 403 ------LKRGTFFN------CSSLVTLDLSYNRLNGSIPDWVDGLSQLSHLILGHNNLEG 450
K F+ +L LDL NR+ G++P + L L L + NNL G
Sbjct: 223 TQKIHLAKNSLAFDLGKVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCG 282
Query: 451 EV 452
E+
Sbjct: 283 EI 284
Score = 64.3 bits (155), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 32/87 (36%), Positives = 50/87 (57%)
Query: 547 NKLIGHIPPQIGNLTRIQTLNLSHNNLTGSIPSTFSNLKHVESLDLSNNKLNGKIPHQLV 606
N L+G IPP I LT++ L ++H N++G+IP S +K + +LD S N L+G +P +
Sbjct: 87 NNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSIS 146
Query: 607 ELKTLEVFSVAYNNLSGEIPEWKAQFA 633
L L + N +SG IP+ F+
Sbjct: 147 SLPNLVGITFDGNRISGAIPDSYGSFS 173
Score = 57.4 bits (137), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 70/244 (28%), Positives = 114/244 (46%), Gaps = 17/244 (6%)
Query: 15 LCSLVHLQELYIAS-NDLRGSLPWCMANMTSLRILDVSSNQLTGSISSSPLVHLTSIEEL 73
L +L +L LYI N+L G +P +A +T L L ++ ++G+I L + ++ L
Sbjct: 72 LANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDF-LSQIKTLVTL 130
Query: 74 MLSNNYFQ--IPISLEPLFNYSRLKIFNAENNEIKAEITESHSLIAPKFQLNTLSLSSNY 131
S N +P S+ L N + + N I I +S+ + F ++++S N
Sbjct: 131 DFSYNALSGTLPPSISSLPNLVGITF---DGNRISGAIPDSYGSFSKLFT--SMTISRNR 185
Query: 132 GDGFIFPKFLYHQHDLEYVDLSHIKMNGEFPNWLLENNTKLETLFLVNDSLAGPFRL-PI 190
G I P F +L +VDLS + G+ + L ++ + + L +SLA F L +
Sbjct: 186 LTGKIPPTF--ANLNLAFVDLSRNMLEGD-ASVLFGSDKNTQKIHLAKNSLA--FDLGKV 240
Query: 191 HSHKRLRQLDVSNNNIRGHIPVKIGDVLPSLYVFNNSMNALDGSIPSSFGNMKFLQILDL 250
K L LD+ NN I G +P + L L+ N S N L G IP GN++ +
Sbjct: 241 GLSKNLNGLDLRNNRIYGTLPQGLTQ-LKFLHSLNVSFNNLCGEIPQG-GNLQRFDVSAY 298
Query: 251 SNNH 254
+NN
Sbjct: 299 ANNK 302
Score = 48.1 bits (113), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 29/99 (29%), Positives = 48/99 (48%), Gaps = 1/99 (1%)
Query: 553 IPPQIGNLTRIQTLNLSH-NNLTGSIPSTFSNLKHVESLDLSNNKLNGKIPHQLVELKTL 611
IP + NL + L + NNL G IP + L + L +++ ++G IP L ++KTL
Sbjct: 68 IPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTL 127
Query: 612 EVFSVAYNNLSGEIPEWKAQFATFNESSYEGNTFLCGLP 650
+YN LSG +P + +++GN +P
Sbjct: 128 VTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIP 166
Score = 43.1 bits (100), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 38/131 (29%), Positives = 56/131 (42%), Gaps = 3/131 (2%)
Query: 562 RIQTLNLSHNNLTGS--IPSTFSNLKHVESLDLSN-NKLNGKIPHQLVELKTLEVFSVAY 618
R+ L+LS NL IPS+ +NL ++ L + N L G IP + +L L + +
Sbjct: 51 RVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITH 110
Query: 619 NNLSGEIPEWKAQFATFNESSYEGNTFLCGLPLPICRSPATMPEASIGNEQDDNLIDMDS 678
N+SG IP++ +Q T + N LP I P + GN + D
Sbjct: 111 TNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYG 170
Query: 679 FFITFTTSYVI 689
F TS I
Sbjct: 171 SFSKLFTSMTI 181
>pdb|3RFJ|A Chain A, Design Of A Binding Scaffold Based On Variable Lymphocyte
Receptors Of Jawless Vertebrates By Module Engineering
Length = 279
Score = 45.4 bits (106), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 60/191 (31%), Positives = 89/191 (46%), Gaps = 15/191 (7%)
Query: 269 NLQFLALSNNNLQGHLFSRNFNLTNLQWLQLEGNRFVGEIPQSLSKCSSLEGLYLNNNSL 328
N+++LAL N L H S LTNL +L L GN+ K ++L+ L L N L
Sbjct: 64 NVRYLALGGNKL--HDISALKELTNLTYLILTGNQLQSLPNGVFDKLTNLKELVLVENQL 121
Query: 329 LGKIPRWLGNLTRLQYIIMPNNHLEGPIPVEFCQLDSLQILDISDNNISGSLPS-CFHPL 387
LT L Y+ + +N L+ F +L +L LD+ DNN SLP F L
Sbjct: 122 QSLPDGVFDKLTNLTYLYLYHNQLQSLPKGVFDKLTNLTRLDL-DNNQLQSLPEGVFDKL 180
Query: 388 S-IKQVHLSKNMLHGQLKRGTFFNCSSLVTLDLSYNRLNGSIPD------WVDGLSQLSH 440
+ +KQ+ L+ N L + G F +SL + L N + + D W+ SQ
Sbjct: 181 TQLKQLSLNDNQLKS-VPDGVFDRLTSLTHIWLLNNPWDCACSDILYLSRWI---SQHPG 236
Query: 441 LILGHNNLEGE 451
L+ G+ NL+ +
Sbjct: 237 LVFGYLNLDPD 247
>pdb|3RFS|A Chain A, Design Of A Binding Scaffold Based On Variable Lymphocyte
Receptors Of Jawless Vertebrates By Module Engineering
pdb|3RFS|B Chain B, Design Of A Binding Scaffold Based On Variable Lymphocyte
Receptors Of Jawless Vertebrates By Module Engineering
Length = 272
Score = 45.4 bits (106), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 40/116 (34%), Positives = 62/116 (53%), Gaps = 4/116 (3%)
Query: 336 LGNLTRLQYIIMPNNHLEGPIPVEFCQLDSLQILDISDNNISGSLPSCFHPLS-IKQVHL 394
L LT L Y+I+ N L+ F +L +L+ L + +N + F L+ + ++L
Sbjct: 81 LKELTNLTYLILTGNQLQSLPNGVFDKLTNLKELVLVENQLQSLPDGVFDKLTNLTYLNL 140
Query: 395 SKNMLHGQLKRGTFFNCSSLVTLDLSYNRLNGSIPDWV-DGLSQLSHLILGHNNLE 449
+ N L L +G F ++L LDLSYN+L S+P+ V D L+QL L L N L+
Sbjct: 141 AHNQLQS-LPKGVFDKLTNLTELDLSYNQLQ-SLPEGVFDKLTQLKDLRLYQNQLK 194
Score = 42.4 bits (98), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 53/181 (29%), Positives = 81/181 (44%), Gaps = 8/181 (4%)
Query: 269 NLQFLALSNNNLQGHLFSRNFNLTNLQWLQLEGNRFVGEIPQSLSKCSSLEGLYLNNNSL 328
N+++LAL N L H S LTNL +L L GN+ K ++L+ L L N L
Sbjct: 64 NVRYLALGGNKL--HDISALKELTNLTYLILTGNQLQSLPNGVFDKLTNLKELVLVENQL 121
Query: 329 LGKIPRWLGNLTRLQYIIMPNNHLEGPIPVEFCQLDSLQILDISDNNISGSLPSCFHPLS 388
LT L Y+ + +N L+ F +L +L LD+S N + F L+
Sbjct: 122 QSLPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQSLPEGVFDKLT 181
Query: 389 -IKQVHLSKNMLHGQLKRGTFFNCSSLVTLDLSYNRLNGSIPDWVDGLSQLSHLILGHNN 447
+K + L +N L + G F +SL + L N + + P G+ LS I H+
Sbjct: 182 QLKDLRLYQNQLKS-VPDGVFDRLTSLQYIWLHDNPWDCTCP----GIRYLSEWINKHSG 236
Query: 448 L 448
+
Sbjct: 237 V 237
Score = 30.4 bits (67), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 20/58 (34%), Positives = 30/58 (51%), Gaps = 3/58 (5%)
Query: 560 LTRIQTLNLSHNNLTGSIPSTFSNLKHVESLDLSNNKLNG---KIPHQLVELKTLEVF 614
LT + LNL+HN L F L ++ LDLS N+L + +L +LK L ++
Sbjct: 132 LTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQSLPEGVFDKLTQLKDLRLY 189
>pdb|3E6J|A Chain A, Crystal Structure Of Variable Lymphocyte Receptor (Vlr)
Rbc36 In Complex With H-Trisaccharide
Length = 229
Score = 44.7 bits (104), Expect = 2e-04, Method: Composition-based stats.
Identities = 34/94 (36%), Positives = 55/94 (58%), Gaps = 9/94 (9%)
Query: 17 SLVHLQELYIASNDLRGSLP-WCMANMTSLRILDVSSNQLTGSISS--SPLVHLTSIEEL 73
SL++L+ELY+ SN L G+LP ++T L +LD+ +NQLT S+ LVHL E
Sbjct: 62 SLINLKELYLGSNQL-GALPVGVFDSLTQLTVLDLGTNQLTVLPSAVFDRLVHLK--ELF 118
Query: 74 MLSNNYFQIPISLEPLFNYSRLKIFNAENNEIKA 107
M N ++P +E L + + L + + N++K+
Sbjct: 119 MCCNKLTELPRGIERLTHLTHLAL---DQNQLKS 149
Score = 38.5 bits (88), Expect = 0.012, Method: Composition-based stats.
Identities = 31/107 (28%), Positives = 47/107 (43%), Gaps = 25/107 (23%)
Query: 367 QILDISDNNISGSLPSCFHPL-SIKQVHLSKNMLHGQLKRGTFFNCSSLVTLDLSYNRLN 425
QIL + DN I+ P F L ++K+++L N L G L G F + + L LDL N+L
Sbjct: 43 QILYLHDNQITKLEPGVFDSLINLKELYLGSNQL-GALPVGVFDSLTQLTVLDLGTNQLT 101
Query: 426 -----------------------GSIPDWVDGLSQLSHLILGHNNLE 449
+P ++ L+ L+HL L N L+
Sbjct: 102 VLPSAVFDRLVHLKELFMCCNKLTELPRGIERLTHLTHLALDQNQLK 148
>pdb|2OMU|A Chain A, Crystal Structure Of Inla G194s+s Y369s/hec1 Complex
Length = 462
Score = 43.9 bits (102), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 54/161 (33%), Positives = 88/161 (54%), Gaps = 16/161 (9%)
Query: 290 NLTNLQWLQLEGNRFVGEIPQSLSKCSSLEGLYLNNNSLLGKIPRWLGNLTRLQYIIMPN 349
NLTNL L+L N + +I +LS +SL+ L ++N + P L NLT L+ + + +
Sbjct: 127 NLTNLNRLELSSNT-ISDI-SALSGLTSLQQLSFSSNQVTDLKP--LANLTTLERLDISS 182
Query: 350 NHLEGPIPVEFCQLDSLQILDISDNNISGSLPSCFHPLSIKQVHLSKNMLHG-QLKR-GT 407
N + I V +L +L+ L ++N IS PL I +L + L+G QLK GT
Sbjct: 183 NKVSD-ISV-LAKLTNLESLIATNNQISD-----ITPLGIL-TNLDELSLNGNQLKDIGT 234
Query: 408 FFNCSSLVTLDLSYNRLNGSIPDWVDGLSQLSHLILGHNNL 448
+ ++L LDL+ N+++ P + GL++L+ L LG N +
Sbjct: 235 LASLTNLTDLDLANNQISNLAP--LSGLTKLTELKLGANQI 273
Score = 37.7 bits (86), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 31/100 (31%), Positives = 51/100 (51%), Gaps = 8/100 (8%)
Query: 7 NGVVRSQGLCSLVHLQELYIASNDLRGSLPWCMANMTSLRILDVSSNQLTGSISSSPLVH 66
N + L L LQ+L +SN + P +AN+T+L LD+SSN+++ S L
Sbjct: 139 NTISDISALSGLTSLQQLSFSSNQVTDLKP--LANLTTLERLDISSNKVS---DISVLAK 193
Query: 67 LTSIEELMLSNNYFQIPISLEPLFNYSRLKIFNAENNEIK 106
LT++E L+ +NN + PL + L + N++K
Sbjct: 194 LTNLESLIATNNQIS---DITPLGILTNLDELSLNGNQLK 230
Score = 33.5 bits (75), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 82/337 (24%), Positives = 139/337 (41%), Gaps = 59/337 (17%)
Query: 15 LCSLVHLQELYIASNDLRGSLPWCMANMTSLRILDVSSNQLT------------------ 56
L +L L ++ + +N + P +AN+T+L L + +NQ+T
Sbjct: 81 LKNLTKLVDILMNNNQIADITP--LANLTNLTGLTLFNNQITDIDPLKNLTNLNRLELSS 138
Query: 57 GSISS-SPLVHLTSIEELMLSNNYFQIPISLEPLFNYSRLKIFNAENNEIK-----AEIT 110
+IS S L LTS+++L S+N L+PL N + L+ + +N++ A++T
Sbjct: 139 NTISDISALSGLTSLQQLSFSSNQV---TDLKPLANLTTLERLDISSNKVSDISVLAKLT 195
Query: 111 ESHSLIAPKFQLNTLSLSSNYGDGFIFPKFLYHQHDLEYVDLSHIKMNGEFPNWLLENNT 170
SLIA Q+ I P + D ++ + +K G + T
Sbjct: 196 NLESLIATNNQI-----------SDITPLGILTNLDELSLNGNQLKDIGTLASL-----T 239
Query: 171 KLETLFLVNDSLAGPFRLPIHSHKRLRQLDVSNNNIRGHIPVKIGDVLPSLYVFNNSMNA 230
L L L N+ ++ P+ +L +L + N I P+ L +L + N +
Sbjct: 240 NLTDLDLANNQISN--LAPLSGLTKLTELKLGANQISNISPLAGLTALTNLELNENQLED 297
Query: 231 LDGSIPSSFGNMKFLQILDLSNNHLTGEIPEHLAVGCVNLQFLALSNNNLQGHLFSRNFN 290
+ S N+K L L L N+++ P LQ L SNN + S N
Sbjct: 298 I-----SPISNLKNLTYLTLYFNNISDISP---VSSLTKLQRLFFSNNKVSD--VSSLAN 347
Query: 291 LTNLQWLQLEGNRFVGEIPQSLSKCSSLEGLYLNNNS 327
LTN+ WL N+ P L+ + + L LN+ +
Sbjct: 348 LTNINWLSAGHNQISDLTP--LANLTRITQLGLNDQA 382
Score = 32.7 bits (73), Expect = 0.65, Method: Compositional matrix adjust.
Identities = 80/311 (25%), Positives = 130/311 (41%), Gaps = 33/311 (10%)
Query: 42 MTSLRILDVSSNQLTGSISSSPLVHLTSIEELMLSNNYFQIPISLEPLFNYSRLKIFNAE 101
+ +L ++ S+NQLT +PL +LT + +++++NN L L N + L +FN +
Sbjct: 62 LNNLTQINFSNNQLT---DITPLKNLTKLVDILMNNNQIADITPLANLTNLTGLTLFNNQ 118
Query: 102 NNEIKAEITESHSLIAPKFQLNTLSLSSNYGDGFIFPKFLYHQHDLEYVDLSHIKMNGEF 161
+I + LN L LSSN L L+ + S ++
Sbjct: 119 ITDIDP--------LKNLTNLNRLELSSNTISDI---SALSGLTSLQQLSFSSNQVTDLK 167
Query: 162 PNWLLENNTKLETLFLVNDSLAGPFRLPIHSHKRLRQLDVSNNNIRGHIPVKIGDVLPSL 221
P L N T LE L + ++ ++ L ++ L L +NN I P+ I L L
Sbjct: 168 P---LANLTTLERLDISSNKVSDISVLAKLTN--LESLIATNNQISDITPLGILTNLDEL 222
Query: 222 YVFNNSMNALDGSIPSSFGNMKFLQILDLSNNHLTGEIPEHLAVGCVNLQFLALSNNNLQ 281
+ N + + + ++ L LDL+NN ++ P G L L L N +
Sbjct: 223 SLNGNQLKDI-----GTLASLTNLTDLDLANNQISNLAPLS---GLTKLTELKLGANQIS 274
Query: 282 GHLFSRNFNLTNLQWLQLEGNRFVGEIPQSLSKCSSLEGLYLNNNSLLGKIPRWLGNLTR 341
S LT L L+L N+ P S K + LY NN S + + +LT+
Sbjct: 275 N--ISPLAGLTALTNLELNENQLEDISPISNLKNLTYLTLYFNNISDISPV----SSLTK 328
Query: 342 LQYIIMPNNHL 352
LQ + NN +
Sbjct: 329 LQRLFFSNNKV 339
Score = 30.0 bits (66), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 33/93 (35%), Positives = 47/93 (50%), Gaps = 6/93 (6%)
Query: 534 KVLSLLSGLDLSCNKLIGHIPPQIGNLTRIQTLNLSHNNLTGSIPSTFSNLKHVESLDLS 593
K L+ L+ L+LS N I I G LT +Q L+ S N +T P +NL +E LD+S
Sbjct: 126 KNLTNLNRLELSSNT-ISDISALSG-LTSLQQLSFSSNQVTDLKP--LANLTTLERLDIS 181
Query: 594 NNKLNGKIPHQLVELKTLEVFSVAYNNLSGEIP 626
+NK++ L +L LE N +S P
Sbjct: 182 SNKVSDI--SVLAKLTNLESLIATNNQISDITP 212
>pdb|2OMT|A Chain A, Crystal Structure Of Inla G194s+sHEC1 COMPLEX
Length = 462
Score = 43.9 bits (102), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 54/161 (33%), Positives = 88/161 (54%), Gaps = 16/161 (9%)
Query: 290 NLTNLQWLQLEGNRFVGEIPQSLSKCSSLEGLYLNNNSLLGKIPRWLGNLTRLQYIIMPN 349
NLTNL L+L N + +I +LS +SL+ L ++N + P L NLT L+ + + +
Sbjct: 127 NLTNLNRLELSSNT-ISDI-SALSGLTSLQQLSFSSNQVTDLKP--LANLTTLERLDISS 182
Query: 350 NHLEGPIPVEFCQLDSLQILDISDNNISGSLPSCFHPLSIKQVHLSKNMLHG-QLKR-GT 407
N + I V +L +L+ L ++N IS PL I +L + L+G QLK GT
Sbjct: 183 NKVSD-ISV-LAKLTNLESLIATNNQISD-----ITPLGI-LTNLDELSLNGNQLKDIGT 234
Query: 408 FFNCSSLVTLDLSYNRLNGSIPDWVDGLSQLSHLILGHNNL 448
+ ++L LDL+ N+++ P + GL++L+ L LG N +
Sbjct: 235 LASLTNLTDLDLANNQISNLAP--LSGLTKLTELKLGANQI 273
Score = 37.7 bits (86), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 30/91 (32%), Positives = 46/91 (50%), Gaps = 5/91 (5%)
Query: 7 NGVVRSQGLCSLVHLQELYIASNDLRGSLPWCMANMTSLRILDVSSNQLTGSISSSPLVH 66
N + L L LQ+L +SN + P +AN+T+L LD+SSN+++ S L
Sbjct: 139 NTISDISALSGLTSLQQLSFSSNQVTDLKP--LANLTTLERLDISSNKVS---DISVLAK 193
Query: 67 LTSIEELMLSNNYFQIPISLEPLFNYSRLKI 97
LT++E L+ +NN L L N L +
Sbjct: 194 LTNLESLIATNNQISDITPLGILTNLDELSL 224
Score = 32.0 bits (71), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 80/311 (25%), Positives = 130/311 (41%), Gaps = 33/311 (10%)
Query: 42 MTSLRILDVSSNQLTGSISSSPLVHLTSIEELMLSNNYFQIPISLEPLFNYSRLKIFNAE 101
+ +L ++ S+NQLT +PL +LT + +++++NN L L N + L +FN +
Sbjct: 62 LNNLTQINFSNNQLT---DITPLKNLTKLVDILMNNNQIADITPLANLTNLTGLTLFNNQ 118
Query: 102 NNEIKAEITESHSLIAPKFQLNTLSLSSNYGDGFIFPKFLYHQHDLEYVDLSHIKMNGEF 161
+I + LN L LSSN L L+ + S ++
Sbjct: 119 ITDIDP--------LKNLTNLNRLELSSNTISDI---SALSGLTSLQQLSFSSNQVTDLK 167
Query: 162 PNWLLENNTKLETLFLVNDSLAGPFRLPIHSHKRLRQLDVSNNNIRGHIPVKIGDVLPSL 221
P L N T LE L + ++ ++ L ++ L L +NN I P+ I L L
Sbjct: 168 P---LANLTTLERLDISSNKVSDISVLAKLTN--LESLIATNNQISDITPLGILTNLDEL 222
Query: 222 YVFNNSMNALDGSIPSSFGNMKFLQILDLSNNHLTGEIPEHLAVGCVNLQFLALSNNNLQ 281
+ N + + + ++ L LDL+NN ++ P G L L L N +
Sbjct: 223 SLNGNQLKDI-----GTLASLTNLTDLDLANNQISNLAPLS---GLTKLTELKLGANQIS 274
Query: 282 GHLFSRNFNLTNLQWLQLEGNRFVGEIPQSLSKCSSLEGLYLNNNSLLGKIPRWLGNLTR 341
S LT L L+L N+ P S K + LY NN S + + +LT+
Sbjct: 275 N--ISPLAGLTALTNLELNENQLEDISPISNLKNLTYLTLYFNNISDISPV----SSLTK 328
Query: 342 LQYIIMPNNHL 352
LQ + NN +
Sbjct: 329 LQRLFFYNNKV 339
Score = 31.2 bits (69), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 81/337 (24%), Positives = 138/337 (40%), Gaps = 59/337 (17%)
Query: 15 LCSLVHLQELYIASNDLRGSLPWCMANMTSLRILDVSSNQLT------------------ 56
L +L L ++ + +N + P +AN+T+L L + +NQ+T
Sbjct: 81 LKNLTKLVDILMNNNQIADITP--LANLTNLTGLTLFNNQITDIDPLKNLTNLNRLELSS 138
Query: 57 GSISS-SPLVHLTSIEELMLSNNYFQIPISLEPLFNYSRLKIFNAENNEIK-----AEIT 110
+IS S L LTS+++L S+N L+PL N + L+ + +N++ A++T
Sbjct: 139 NTISDISALSGLTSLQQLSFSSNQV---TDLKPLANLTTLERLDISSNKVSDISVLAKLT 195
Query: 111 ESHSLIAPKFQLNTLSLSSNYGDGFIFPKFLYHQHDLEYVDLSHIKMNGEFPNWLLENNT 170
SLIA Q+ I P + D ++ + +K G + T
Sbjct: 196 NLESLIATNNQI-----------SDITPLGILTNLDELSLNGNQLKDIGTLASL-----T 239
Query: 171 KLETLFLVNDSLAGPFRLPIHSHKRLRQLDVSNNNIRGHIPVKIGDVLPSLYVFNNSMNA 230
L L L N+ ++ P+ +L +L + N I P+ L +L + N +
Sbjct: 240 NLTDLDLANNQISN--LAPLSGLTKLTELKLGANQISNISPLAGLTALTNLELNENQLED 297
Query: 231 LDGSIPSSFGNMKFLQILDLSNNHLTGEIPEHLAVGCVNLQFLALSNNNLQGHLFSRNFN 290
+ S N+K L L L N+++ P LQ L NN + S N
Sbjct: 298 I-----SPISNLKNLTYLTLYFNNISDISP---VSSLTKLQRLFFYNNKVSD--VSSLAN 347
Query: 291 LTNLQWLQLEGNRFVGEIPQSLSKCSSLEGLYLNNNS 327
LTN+ WL N+ P L+ + + L LN+ +
Sbjct: 348 LTNINWLSAGHNQISDLTP--LANLTRITQLGLNDQA 382
Score = 30.0 bits (66), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 33/93 (35%), Positives = 47/93 (50%), Gaps = 6/93 (6%)
Query: 534 KVLSLLSGLDLSCNKLIGHIPPQIGNLTRIQTLNLSHNNLTGSIPSTFSNLKHVESLDLS 593
K L+ L+ L+LS N I I G LT +Q L+ S N +T P +NL +E LD+S
Sbjct: 126 KNLTNLNRLELSSNT-ISDISALSG-LTSLQQLSFSSNQVTDLKP--LANLTTLERLDIS 181
Query: 594 NNKLNGKIPHQLVELKTLEVFSVAYNNLSGEIP 626
+NK++ L +L LE N +S P
Sbjct: 182 SNKVSDI--SVLAKLTNLESLIATNNQISDITP 212
>pdb|2OMX|A Chain A, Crystal Structure Of Inla S192n G194s+sHEC1 COMPLEX
Length = 462
Score = 43.9 bits (102), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 54/161 (33%), Positives = 88/161 (54%), Gaps = 16/161 (9%)
Query: 290 NLTNLQWLQLEGNRFVGEIPQSLSKCSSLEGLYLNNNSLLGKIPRWLGNLTRLQYIIMPN 349
NLTNL L+L N + +I +LS +SL+ L ++N + P L NLT L+ + + +
Sbjct: 127 NLTNLNRLELSSNT-ISDI-SALSGLTSLQQLNFSSNQVTDLKP--LANLTTLERLDISS 182
Query: 350 NHLEGPIPVEFCQLDSLQILDISDNNISGSLPSCFHPLSIKQVHLSKNMLHG-QLKR-GT 407
N + I V +L +L+ L ++N IS PL I +L + L+G QLK GT
Sbjct: 183 NKVSD-ISV-LAKLTNLESLIATNNQISD-----ITPLGI-LTNLDELSLNGNQLKDIGT 234
Query: 408 FFNCSSLVTLDLSYNRLNGSIPDWVDGLSQLSHLILGHNNL 448
+ ++L LDL+ N+++ P + GL++L+ L LG N +
Sbjct: 235 LASLTNLTDLDLANNQISNLAP--LSGLTKLTELKLGANQI 273
Score = 37.7 bits (86), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 30/91 (32%), Positives = 46/91 (50%), Gaps = 5/91 (5%)
Query: 7 NGVVRSQGLCSLVHLQELYIASNDLRGSLPWCMANMTSLRILDVSSNQLTGSISSSPLVH 66
N + L L LQ+L +SN + P +AN+T+L LD+SSN+++ S L
Sbjct: 139 NTISDISALSGLTSLQQLNFSSNQVTDLKP--LANLTTLERLDISSNKVS---DISVLAK 193
Query: 67 LTSIEELMLSNNYFQIPISLEPLFNYSRLKI 97
LT++E L+ +NN L L N L +
Sbjct: 194 LTNLESLIATNNQISDITPLGILTNLDELSL 224
Score = 32.7 bits (73), Expect = 0.74, Method: Compositional matrix adjust.
Identities = 80/311 (25%), Positives = 131/311 (42%), Gaps = 33/311 (10%)
Query: 42 MTSLRILDVSSNQLTGSISSSPLVHLTSIEELMLSNNYFQIPISLEPLFNYSRLKIFNAE 101
+ +L ++ S+NQLT +PL +LT + +++++NN L L N + L +FN +
Sbjct: 62 LNNLTQINFSNNQLT---DITPLKNLTKLVDILMNNNQIADITPLANLTNLTGLTLFNNQ 118
Query: 102 NNEIKAEITESHSLIAPKFQLNTLSLSSNYGDGFIFPKFLYHQHDLEYVDLSHIKMNGEF 161
+I + LN L LSSN L L+ ++ S ++
Sbjct: 119 ITDIDP--------LKNLTNLNRLELSSNTISDI---SALSGLTSLQQLNFSSNQVTDLK 167
Query: 162 PNWLLENNTKLETLFLVNDSLAGPFRLPIHSHKRLRQLDVSNNNIRGHIPVKIGDVLPSL 221
P L N T LE L + ++ ++ L ++ L L +NN I P+ I L L
Sbjct: 168 P---LANLTTLERLDISSNKVSDISVLAKLTN--LESLIATNNQISDITPLGILTNLDEL 222
Query: 222 YVFNNSMNALDGSIPSSFGNMKFLQILDLSNNHLTGEIPEHLAVGCVNLQFLALSNNNLQ 281
+ N + + + ++ L LDL+NN ++ P G L L L N +
Sbjct: 223 SLNGNQLKDI-----GTLASLTNLTDLDLANNQISNLAPLS---GLTKLTELKLGANQIS 274
Query: 282 GHLFSRNFNLTNLQWLQLEGNRFVGEIPQSLSKCSSLEGLYLNNNSLLGKIPRWLGNLTR 341
S LT L L+L N+ P S K + LY NN S + + +LT+
Sbjct: 275 N--ISPLAGLTALTNLELNENQLEDISPISNLKNLTYLTLYFNNISDISPV----SSLTK 328
Query: 342 LQYIIMPNNHL 352
LQ + NN +
Sbjct: 329 LQRLFFYNNKV 339
Score = 32.0 bits (71), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 34/93 (36%), Positives = 47/93 (50%), Gaps = 6/93 (6%)
Query: 534 KVLSLLSGLDLSCNKLIGHIPPQIGNLTRIQTLNLSHNNLTGSIPSTFSNLKHVESLDLS 593
K L+ L+ L+LS N I I G LT +Q LN S N +T P +NL +E LD+S
Sbjct: 126 KNLTNLNRLELSSNT-ISDISALSG-LTSLQQLNFSSNQVTDLKP--LANLTTLERLDIS 181
Query: 594 NNKLNGKIPHQLVELKTLEVFSVAYNNLSGEIP 626
+NK++ L +L LE N +S P
Sbjct: 182 SNKVSDI--SVLAKLTNLESLIATNNQISDITP 212
Score = 30.8 bits (68), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 81/337 (24%), Positives = 138/337 (40%), Gaps = 59/337 (17%)
Query: 15 LCSLVHLQELYIASNDLRGSLPWCMANMTSLRILDVSSNQLT------------------ 56
L +L L ++ + +N + P +AN+T+L L + +NQ+T
Sbjct: 81 LKNLTKLVDILMNNNQIADITP--LANLTNLTGLTLFNNQITDIDPLKNLTNLNRLELSS 138
Query: 57 GSISS-SPLVHLTSIEELMLSNNYFQIPISLEPLFNYSRLKIFNAENNEIK-----AEIT 110
+IS S L LTS+++L S+N L+PL N + L+ + +N++ A++T
Sbjct: 139 NTISDISALSGLTSLQQLNFSSNQV---TDLKPLANLTTLERLDISSNKVSDISVLAKLT 195
Query: 111 ESHSLIAPKFQLNTLSLSSNYGDGFIFPKFLYHQHDLEYVDLSHIKMNGEFPNWLLENNT 170
SLIA Q+ I P + D ++ + +K G + T
Sbjct: 196 NLESLIATNNQI-----------SDITPLGILTNLDELSLNGNQLKDIGTLASL-----T 239
Query: 171 KLETLFLVNDSLAGPFRLPIHSHKRLRQLDVSNNNIRGHIPVKIGDVLPSLYVFNNSMNA 230
L L L N+ ++ P+ +L +L + N I P+ L +L + N +
Sbjct: 240 NLTDLDLANNQISN--LAPLSGLTKLTELKLGANQISNISPLAGLTALTNLELNENQLED 297
Query: 231 LDGSIPSSFGNMKFLQILDLSNNHLTGEIPEHLAVGCVNLQFLALSNNNLQGHLFSRNFN 290
+ S N+K L L L N+++ P LQ L NN + S N
Sbjct: 298 I-----SPISNLKNLTYLTLYFNNISDISP---VSSLTKLQRLFFYNNKVSD--VSSLAN 347
Query: 291 LTNLQWLQLEGNRFVGEIPQSLSKCSSLEGLYLNNNS 327
LTN+ WL N+ P L+ + + L LN+ +
Sbjct: 348 LTNINWLSAGHNQISDLTP--LANLTRITQLGLNDQA 382
>pdb|3KJ4|A Chain A, Structure Of Rat Nogo Receptor Bound To 1d9 Antagonist
Antibody
pdb|3KJ4|D Chain D, Structure Of Rat Nogo Receptor Bound To 1d9 Antagonist
Antibody
Length = 286
Score = 43.1 bits (100), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 52/171 (30%), Positives = 73/171 (42%), Gaps = 26/171 (15%)
Query: 229 NALDGSIPSSFGNMKFLQILDLSNN--------------------HLTG----EIPEHLA 264
NAL G ++F + L+ LDLS+N HL E+ L
Sbjct: 65 NALAGIDAAAFTGLTLLEQLDLSDNAQLRVVDPTTFRGLGHLHTLHLDRCGLQELGPGLF 124
Query: 265 VGCVNLQFLALSNNNLQGHLFSRNFNLTNLQWLQLEGNRFVGEIPQSLSKCSSLEGLYLN 324
G LQ+L L +NNLQ + +L NL L L GNR + SL+ L L+
Sbjct: 125 RGLAALQYLYLQDNNLQALPDNTFRDLGNLTHLFLHGNRIPSVPEHAFRGLHSLDRLLLH 184
Query: 325 NNSLLGKIPRWLGNLTRLQYIIMPNNHLEGPIPVE-FCQLDSLQILDISDN 374
N + P +L RL + + N+L +P E L SLQ L ++DN
Sbjct: 185 QNHVARVHPHAFRDLGRLMTLYLFANNLSM-LPAEVLVPLRSLQYLRLNDN 234
Score = 35.0 bits (79), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 46/157 (29%), Positives = 69/157 (43%), Gaps = 5/157 (3%)
Query: 295 QWLQLEGNRFVGEIPQSLSKCSSLEGLYLNNNSLLGKIPRWLGNLTRLQYIIMPNN-HLE 353
Q + L GNR S C +L L+L++N+L G LT L+ + + +N L
Sbjct: 34 QRIFLHGNRISYVPAASFQSCRNLTILWLHSNALAGIDAAAFTGLTLLEQLDLSDNAQLR 93
Query: 354 GPIPVEFCQLDSLQILDISDNNISGSLPSCFHPLSIKQ-VHLSKNMLHGQLKRGTFFNCS 412
P F L L L + + P F L+ Q ++L N L L TF +
Sbjct: 94 VVDPTTFRGLGHLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNNLQA-LPDNTFRDLG 152
Query: 413 SLVTLDLSYNRLNGSIPDWV-DGLSQLSHLILGHNNL 448
+L L L NR+ S+P+ GL L L+L N++
Sbjct: 153 NLTHLFLHGNRIP-SVPEHAFRGLHSLDRLLLHQNHV 188
Score = 29.3 bits (64), Expect = 7.0, Method: Compositional matrix adjust.
Identities = 31/109 (28%), Positives = 46/109 (42%), Gaps = 1/109 (0%)
Query: 343 QYIIMPNNHLEGPIPVEFCQLDSLQILDISDNNISGSLPSCFHPLSI-KQVHLSKNMLHG 401
Q I + N + F +L IL + N ++G + F L++ +Q+ LS N
Sbjct: 34 QRIFLHGNRISYVPAASFQSCRNLTILWLHSNALAGIDAAAFTGLTLLEQLDLSDNAQLR 93
Query: 402 QLKRGTFFNCSSLVTLDLSYNRLNGSIPDWVDGLSQLSHLILGHNNLEG 450
+ TF L TL L L P GL+ L +L L NNL+
Sbjct: 94 VVDPTTFRGLGHLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNNLQA 142
>pdb|1P8T|A Chain A, Crystal Structure Of Nogo-66 Receptor
Length = 285
Score = 41.6 bits (96), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 55/191 (28%), Positives = 83/191 (43%), Gaps = 6/191 (3%)
Query: 188 LPIHSHKRLRQLDVS--NNNIRGHIPVKIGDVLPSLYVFNNSMNALDGSI-PSSFGNMKF 244
+P S + R L + ++N+ I L L + S NA S+ P++F +
Sbjct: 46 VPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGR 105
Query: 245 LQILDLSNNHLTGEIPEHLAVGCVNLQFLALSNNNLQGHLFSRNFNLTNLQWLQLEGNRF 304
L L L L E+ L G LQ+L L +N LQ +L NL L L GNR
Sbjct: 106 LHTLHLDRCGLQ-ELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRI 164
Query: 305 VGEIPQSLSKCSSLEGLYLNNNSLLGKIPRWLGNLTRLQYIIMPNNHLEGPIPVE-FCQL 363
++ SL+ L L+ N + P +L RL + + N+L +P E L
Sbjct: 165 SSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSA-LPTEALAPL 223
Query: 364 DSLQILDISDN 374
+LQ L ++DN
Sbjct: 224 RALQYLRLNDN 234
Score = 31.6 bits (70), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 44/156 (28%), Positives = 63/156 (40%), Gaps = 27/156 (17%)
Query: 295 QWLQLEGNRFVGEIPQSLSKCSSLEGLYLNNNSLLGKIPRWLGNLTRLQYIIMPNNHLEG 354
Q + L GNR S C +L L+L++N +L +I
Sbjct: 34 QRIFLHGNRISHVPAASFRACRNLTILWLHSN-VLARID--------------------- 71
Query: 355 PIPVEFCQLDSLQILDISDNNISGSL-PSCFHPLS-IKQVHLSKNMLHGQLKRGTFFNCS 412
F L L+ LD+SDN S+ P+ FH L + +HL + L +L G F +
Sbjct: 72 --AAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQ-ELGPGLFRGLA 128
Query: 413 SLVTLDLSYNRLNGSIPDWVDGLSQLSHLILGHNNL 448
+L L L N L D L L+HL L N +
Sbjct: 129 ALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRI 164
Score = 30.4 bits (67), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 25/92 (27%), Positives = 36/92 (39%), Gaps = 5/92 (5%)
Query: 557 IGNLTRIQTLNLSHNNLTGSIP-STFSNLKHVESLDLSNNKLNGKIPHQLVELKTLEVFS 615
+GNLT + H N S+P F L ++ L L N++ PH +L L
Sbjct: 151 LGNLTHL----FLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLY 206
Query: 616 VAYNNLSGEIPEWKAQFATFNESSYEGNTFLC 647
+ NNLS E A N ++C
Sbjct: 207 LFANNLSALPTEALAPLRALQYLRLNDNPWVC 238
>pdb|1OZN|A Chain A, 1.5a Crystal Structure Of The Nogo Receptor Ligand Binding
Domain Reveals A Convergent Recognition Scaffold
Mediating Inhibition Of Myelination
Length = 285
Score = 41.6 bits (96), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 55/191 (28%), Positives = 83/191 (43%), Gaps = 6/191 (3%)
Query: 188 LPIHSHKRLRQLDVS--NNNIRGHIPVKIGDVLPSLYVFNNSMNALDGSI-PSSFGNMKF 244
+P S + R L + ++N+ I L L + S NA S+ P++F +
Sbjct: 47 VPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGR 106
Query: 245 LQILDLSNNHLTGEIPEHLAVGCVNLQFLALSNNNLQGHLFSRNFNLTNLQWLQLEGNRF 304
L L L L E+ L G LQ+L L +N LQ +L NL L L GNR
Sbjct: 107 LHTLHLDRCGLQ-ELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRI 165
Query: 305 VGEIPQSLSKCSSLEGLYLNNNSLLGKIPRWLGNLTRLQYIIMPNNHLEGPIPVE-FCQL 363
++ SL+ L L+ N + P +L RL + + N+L +P E L
Sbjct: 166 SSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSA-LPTEALAPL 224
Query: 364 DSLQILDISDN 374
+LQ L ++DN
Sbjct: 225 RALQYLRLNDN 235
Score = 31.2 bits (69), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 44/156 (28%), Positives = 63/156 (40%), Gaps = 27/156 (17%)
Query: 295 QWLQLEGNRFVGEIPQSLSKCSSLEGLYLNNNSLLGKIPRWLGNLTRLQYIIMPNNHLEG 354
Q + L GNR S C +L L+L++N +L +I
Sbjct: 35 QRIFLHGNRISHVPAASFRACRNLTILWLHSN-VLARID--------------------- 72
Query: 355 PIPVEFCQLDSLQILDISDNNISGSL-PSCFHPLS-IKQVHLSKNMLHGQLKRGTFFNCS 412
F L L+ LD+SDN S+ P+ FH L + +HL + L +L G F +
Sbjct: 73 --AAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQ-ELGPGLFRGLA 129
Query: 413 SLVTLDLSYNRLNGSIPDWVDGLSQLSHLILGHNNL 448
+L L L N L D L L+HL L N +
Sbjct: 130 ALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRI 165
Score = 30.4 bits (67), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 25/92 (27%), Positives = 36/92 (39%), Gaps = 5/92 (5%)
Query: 557 IGNLTRIQTLNLSHNNLTGSIP-STFSNLKHVESLDLSNNKLNGKIPHQLVELKTLEVFS 615
+GNLT + H N S+P F L ++ L L N++ PH +L L
Sbjct: 152 LGNLTHL----FLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLY 207
Query: 616 VAYNNLSGEIPEWKAQFATFNESSYEGNTFLC 647
+ NNLS E A N ++C
Sbjct: 208 LFANNLSALPTEALAPLRALQYLRLNDNPWVC 239
>pdb|4B8C|D Chain D, Nuclease Module Of The Yeast Ccr4-Not Complex
pdb|4B8C|J Chain J, Nuclease Module Of The Yeast Ccr4-Not Complex
pdb|4B8C|K Chain K, Nuclease Module Of The Yeast Ccr4-Not Complex
pdb|4B8C|L Chain L, Nuclease Module Of The Yeast Ccr4-Not Complex
Length = 727
Score = 41.2 bits (95), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 38/113 (33%), Positives = 59/113 (52%), Gaps = 10/113 (8%)
Query: 216 DVLPSLYVFNNSMNALDGSIPSSFGNMKFLQILDLSNNHLTGEIPEHLAVGCVNLQFLAL 275
D L LY+ NS+ L P+ N+ L++LDLS+N LT +P L C L++
Sbjct: 247 DFLTRLYLNGNSLTEL----PAEIKNLSNLRVLDLSHNRLTS-LPAELG-SCFQLKYFYF 300
Query: 276 SNNNLQGHLFSRNFNLTNLQWLQLEGNRFVGEIPQSLSKCSSLEGL--YLNNN 326
+N + + NL NLQ+L +EGN + + L++ S+ GL YL +N
Sbjct: 301 FDNMVTTLPWEFG-NLCNLQFLGVEGNPLEKQFLKILTE-KSVTGLIFYLRDN 351
Score = 35.8 bits (81), Expect = 0.078, Method: Compositional matrix adjust.
Identities = 30/104 (28%), Positives = 46/104 (44%), Gaps = 16/104 (15%)
Query: 264 AVGCVNLQFLALSNNNLQGHLFSRNF--------------NLTNLQWLQLEGNRFVGEIP 309
A+ NLQ +S N + +R + NL+NL+ L L NR +P
Sbjct: 228 ALDLSNLQIFNISANIFKYDFLTRLYLNGNSLTELPAEIKNLSNLRVLDLSHNRLTS-LP 286
Query: 310 QSLSKCSSLEGLYLNNNSLLGKIPRWLGNLTRLQYIIMPNNHLE 353
L C L+ Y +N ++ +P GNL LQ++ + N LE
Sbjct: 287 AELGSCFQLKYFYFFDN-MVTTLPWEFGNLCNLQFLGVEGNPLE 329
Score = 29.3 bits (64), Expect = 7.3, Method: Compositional matrix adjust.
Identities = 16/36 (44%), Positives = 24/36 (66%), Gaps = 1/36 (2%)
Query: 21 LQELYIASNDLRGSLPWCMANMTSLRILDVSSNQLT 56
L LY+ N L LP + N+++LR+LD+S N+LT
Sbjct: 249 LTRLYLNGNSL-TELPAEIKNLSNLRVLDLSHNRLT 283
Score = 29.3 bits (64), Expect = 8.3, Method: Compositional matrix adjust.
Identities = 18/42 (42%), Positives = 28/42 (66%), Gaps = 2/42 (4%)
Query: 538 LLSGLDLSCNKLIGHIPPQIGNLTRIQTLNLSHNNLTGSIPS 579
L+ L L+ N L +P +I NL+ ++ L+LSHN LT S+P+
Sbjct: 248 FLTRLYLNGNSLT-ELPAEIKNLSNLRVLDLSHNRLT-SLPA 287
>pdb|1G9U|A Chain A, Crystal Structure Of Yopm-leucine Rich Effector Protein
From Yersinia Pestis
pdb|1JL5|A Chain A, Novel Molecular Architecture Of Yopm-A Leucine-Rich
Effector Protein From Yersinia Pestis
Length = 454
Score = 41.2 bits (95), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 90/321 (28%), Positives = 138/321 (42%), Gaps = 76/321 (23%)
Query: 172 LETLFLVNDSLAGPFRLPIHSHKRLRQLDVSNNNIRGHIPVKIGDVLPSLYVFNNSMNAL 231
LE+L +SL LP + L+ L V NNN++ + D+ P L S N L
Sbjct: 93 LESLVASCNSLTELPELP----QSLKSLLVDNNNLKA-----LSDLPPLLEYLGVSNNQL 143
Query: 232 DGSIPSSFGNMKFLQILDLSNNHLTGEIPEHLAVGCVNLQFLALSNNNLQ---------- 281
+ +P N FL+I+D+ NN L + L +L+F+A NN L+
Sbjct: 144 EK-LPE-LQNSSFLKIIDVDNNSL-----KKLPDLPPSLEFIAAGNNQLEELPELQNLPF 196
Query: 282 -GHLFSRNFNLTNLQWLQLE------GNRFVGEIPQSLSKCSSLEGLYLNNNSLLGKIPR 334
+++ N +L L L L GN + E+P+ L L +Y +NN LL +P
Sbjct: 197 LTAIYADNNSLKKLPDLPLSLESIVAGNNILEELPE-LQNLPFLTTIYADNN-LLKTLPD 254
Query: 335 WLGNLTRLQYIIMPNNHLEGPIPVEFCQLDSLQILDISDNNISG--SLPS---------- 382
+L L +N+L +P E Q SL LD+S+N SG LP
Sbjct: 255 LPPSLEALNVR---DNYLTD-LP-ELPQ--SLTFLDVSENIFSGLSELPPNLYYLNASSN 307
Query: 383 -----CFHPLSIKQVHLSKN------MLHGQLKR--GTFFNCSS-------LVTLDLSYN 422
C P S++++++S N L +L+R +F + + L L + YN
Sbjct: 308 EIRSLCDLPPSLEELNVSNNKLIELPALPPRLERLIASFNHLAEVPELPQNLKQLHVEYN 367
Query: 423 RLN--GSIPDWVDGLSQLSHL 441
L IP+ V+ L SHL
Sbjct: 368 PLREFPDIPESVEDLRMNSHL 388
>pdb|3ZYJ|A Chain A, Netring1 In Complex With Ngl1
pdb|3ZYJ|C Chain C, Netring1 In Complex With Ngl1
Length = 440
Score = 40.8 bits (94), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 66/239 (27%), Positives = 93/239 (38%), Gaps = 62/239 (25%)
Query: 238 SFGNMKFLQILDLSNNHLTGEIPEHLAVGCVNLQFLALSNNNLQGHLFSRNFNLTNLQWL 297
SF +++ L+IL LS NH+ + +G N L NL L
Sbjct: 83 SFKHLRHLEILQLSRNHI-----RTIEIGAFN--------------------GLANLNTL 117
Query: 298 QLEGNRFVGEIPQSLSKCSSLEGLYLNNNSL-------LGKIPRW----LGNLTRLQYI- 345
+L NR + S L+ L+L NN + +IP LG L RL YI
Sbjct: 118 ELFDNRLTTIPNGAFVYLSKLKELWLRNNPIESIPSYAFNRIPSLRRLDLGELKRLSYIS 177
Query: 346 --------------IMPNNHLEGPIPVEFCQLDSLQILDISDNNISGSLPSCFHPLSIKQ 391
+ N E P +LD LD+S N++S P F L
Sbjct: 178 EGAFEGLSNLRYLNLAMCNLREIPNLTPLIKLDE---LDLSGNHLSAIRPGSFQGL---- 230
Query: 392 VHLSK-NMLHGQLK---RGTFFNCSSLVTLDLSYNRLNGSIPDWVDGLSQLSHLILGHN 446
+HL K M+ Q++ R F N SLV ++L++N L D L L + L HN
Sbjct: 231 MHLQKLWMIQSQIQVIERNAFDNLQSLVEINLAHNNLTLLPHDLFTPLHHLERIHLHHN 289
Score = 32.3 bits (72), Expect = 0.92, Method: Compositional matrix adjust.
Identities = 30/101 (29%), Positives = 56/101 (55%), Gaps = 6/101 (5%)
Query: 525 KNIAYIYQGKV--LSLLSGLDLS-CNKLIGHIPPQIGNLTRIQTLNLSHNNLTGSIPSTF 581
K ++YI +G LS L L+L+ CN + IP + L ++ L+LS N+L+ P +F
Sbjct: 171 KRLSYISEGAFEGLSNLRYLNLAMCN--LREIP-NLTPLIKLDELDLSGNHLSAIRPGSF 227
Query: 582 SNLKHVESLDLSNNKLNGKIPHQLVELKTLEVFSVAYNNLS 622
L H++ L + +++ + L++L ++A+NNL+
Sbjct: 228 QGLMHLQKLWMIQSQIQVIERNAFDNLQSLVEINLAHNNLT 268
Score = 30.4 bits (67), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 23/87 (26%), Positives = 45/87 (51%), Gaps = 5/87 (5%)
Query: 9 VVRSQGLCSLVHLQELYIASNDLRGSLPWCMANMTSLRILDVSSNQLTGSISSSPLVHLT 68
+++ L HL+ L ++ N +R + +L L++ N+LT +I + V+L+
Sbjct: 78 IIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDNRLT-TIPNGAFVYLS 136
Query: 69 SIEELMLSNNYFQIPISLEPLFNYSRL 95
++EL L NN PI P + ++R+
Sbjct: 137 KLKELWLRNN----PIESIPSYAFNRI 159
>pdb|2WQX|A Chain A, Inlb321_4r: S199r, D200r, G206r, A227r, C242a Mutant Of
The Listeria Monocytogenes Inlb Internalin Domain
pdb|2WQX|B Chain B, Inlb321_4r: S199r, D200r, G206r, A227r, C242a Mutant Of
The Listeria Monocytogenes Inlb Internalin Domain
Length = 289
Score = 40.8 bits (94), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 34/120 (28%), Positives = 55/120 (45%), Gaps = 7/120 (5%)
Query: 5 EVNGVVRSQGLCSLVHLQELYIASNDLRGSLPWCMANMTSLRILDVSSNQLTGSISSSPL 64
E NG+ GL L L+ LY+ +N + ++ +T L L + NQ+ + PL
Sbjct: 118 EHNGISDINGLVHLPQLESLYLGNNKITDIT--VLSRLTKLDTLSLEDNQIRRIV---PL 172
Query: 65 VHLTSIEELMLSNNYFQIPISLEPLFNYSRLKIFNAENNEIKAEITESHSLIAPKFQLNT 124
LT ++ L LS N+ +L L N L++F+ E + I +L+ P NT
Sbjct: 173 ARLTKLQNLYLSKNHISDLRALRGLKNLDVLELFSQE--ALNKPINHQSNLVVPNTVKNT 230
>pdb|2Y5Q|A Chain A, Listeria Monocytogenes Inlb (Internalin B) Residues 36-392
Length = 362
Score = 40.4 bits (93), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 34/120 (28%), Positives = 56/120 (46%), Gaps = 7/120 (5%)
Query: 5 EVNGVVRSQGLCSLVHLQELYIASNDLRGSLPWCMANMTSLRILDVSSNQLTGSISSSPL 64
E NG+ GL L L+ LY+ +N + ++ +T L L + NQ++ + PL
Sbjct: 120 EHNGISDINGLVHLPQLESLYLGNNKITDIT--VLSRLTKLDTLSLEDNQISDIV---PL 174
Query: 65 VHLTSIEELMLSNNYFQIPISLEPLFNYSRLKIFNAENNEIKAEITESHSLIAPKFQLNT 124
LT ++ L LS N+ +L L N L++F+ E + I +L+ P NT
Sbjct: 175 AGLTKLQNLYLSKNHISDLRALAGLKNLDVLELFSQEC--LNKPINHQSNLVVPNTVKNT 232
>pdb|1DCE|A Chain A, Crystal Structure Of Rab Geranylgeranyltransferase From
Rat Brain
pdb|1DCE|C Chain C, Crystal Structure Of Rab Geranylgeranyltransferase From
Rat Brain
Length = 567
Score = 40.0 bits (92), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 30/102 (29%), Positives = 50/102 (49%), Gaps = 10/102 (9%)
Query: 13 QGLCSLVHLQELYIAS------NDLRGSLPWCMANMTSLRILDVSSNQLTGSISSSPLVH 66
+ L L HL++L + + N LR LP +A + L +L S N L + +
Sbjct: 451 KDLTVLCHLEQLLLVTHLDLSHNRLRA-LPPALAALRCLEVLQASDNALENV---DGVAN 506
Query: 67 LTSIEELMLSNNYFQIPISLEPLFNYSRLKIFNAENNEIKAE 108
L ++EL+L NN Q +++PL + RL + N + N + E
Sbjct: 507 LPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQE 548
Score = 31.6 bits (70), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 28/82 (34%), Positives = 34/82 (41%), Gaps = 4/82 (4%)
Query: 199 LDVSNNNIRGHIPVKIGDVLPSLYVFNNSMNALDGSIPSSFGNMKFLQILDLSNNHLTGE 258
LD+S+N +R P L L V S NAL+ N+ LQ L L NN L
Sbjct: 468 LDLSHNRLRALPPALAA--LRCLEVLQASDNALENV--DGVANLPRLQELLLCNNRLQQS 523
Query: 259 IPEHLAVGCVNLQFLALSNNNL 280
V C L L L N+L
Sbjct: 524 AAIQPLVSCPRLVLLNLQGNSL 545
>pdb|1LTX|A Chain A, Structure Of Rab Escort Protein-1 In Complex With Rab
Geranylgeranyl Transferase And Isoprenoid
Length = 567
Score = 40.0 bits (92), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 30/102 (29%), Positives = 50/102 (49%), Gaps = 10/102 (9%)
Query: 13 QGLCSLVHLQELYIAS------NDLRGSLPWCMANMTSLRILDVSSNQLTGSISSSPLVH 66
+ L L HL++L + + N LR LP +A + L +L S N L + +
Sbjct: 451 KDLTVLCHLEQLLLVTHLDLSHNRLRA-LPPALAALRCLEVLQASDNALENV---DGVAN 506
Query: 67 LTSIEELMLSNNYFQIPISLEPLFNYSRLKIFNAENNEIKAE 108
L ++EL+L NN Q +++PL + RL + N + N + E
Sbjct: 507 LPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQE 548
Score = 31.6 bits (70), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 28/82 (34%), Positives = 34/82 (41%), Gaps = 4/82 (4%)
Query: 199 LDVSNNNIRGHIPVKIGDVLPSLYVFNNSMNALDGSIPSSFGNMKFLQILDLSNNHLTGE 258
LD+S+N +R P L L V S NAL+ N+ LQ L L NN L
Sbjct: 468 LDLSHNRLRALPPALAA--LRCLEVLQASDNALENV--DGVANLPRLQELLLCNNRLQQS 523
Query: 259 IPEHLAVGCVNLQFLALSNNNL 280
V C L L L N+L
Sbjct: 524 AAIQPLVSCPRLVLLNLQGNSL 545
>pdb|1H6T|A Chain A, Internalin B: Crystal Structure Of Fused N-Terminal
Domains
Length = 291
Score = 40.0 bits (92), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 39/145 (26%), Positives = 64/145 (44%), Gaps = 16/145 (11%)
Query: 5 EVNGVVRSQGLCSLVHLQELYIASNDLRGSLPWCMANMTSLRILDVSSNQLTGSISSSPL 64
E NG+ GL L L+ LY+ +N + ++ +T L L + NQ++ + PL
Sbjct: 120 EHNGISDINGLVHLPQLESLYLGNNKITDIT--VLSRLTKLDTLSLEDNQISDIV---PL 174
Query: 65 VHLTSIEELMLSNNYFQIPISLEPLFNYSRLKIFNAENNEIKAEITESHSLIAPKFQLNT 124
LT ++ L LS N+ +L L N L++F+ E + I +L+ P NT
Sbjct: 175 AGLTKLQNLYLSKNHISDLRALAGLKNLDVLELFSQEC--LNKPINHQSNLVVPNTVKNT 232
Query: 125 LSLSSNYGDG-FIFPKFLYHQHDLE 148
DG + P+ + D E
Sbjct: 233 --------DGSLVTPEIISDDGDYE 249
>pdb|1XCD|A Chain A, Dimeric Bovine Tissue-Extracted Decorin, Crystal Form 1
pdb|1XEC|A Chain A, Dimeric Bovine Tissue-Extracted Decorin, Crystal Form 2
pdb|1XEC|B Chain B, Dimeric Bovine Tissue-Extracted Decorin, Crystal Form 2
Length = 329
Score = 40.0 bits (92), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 61/238 (25%), Positives = 104/238 (43%), Gaps = 33/238 (13%)
Query: 146 DLEYVDLSHIKMNGEFPNWLLENNTKLETLFLVNDSLAGPFRLPIHSHKRLRQLDVSNNN 205
DL+ ++ IK +G+F N L+N L TL L+N+ ++ +L +L +S N
Sbjct: 58 DLQNNKITEIK-DGDFKN--LKN---LHTLILINNKISKISPGAFAPLVKLERLYLSKNQ 111
Query: 206 IRGHIPVKIGDVLPSLYVFNNSMNALDGSIPSSFGNMKFLQILDLSNNHLTGEIPEHLAV 265
++ +P K+ L L V N + + S+ F + + +++L N L E+ A
Sbjct: 112 LK-ELPEKMPKTLQELRVHENEITKVRKSV---FNGLNQMIVVELGTNPLKSSGIENGAF 167
Query: 266 -GCVNLQFLALSNNNL----QG--------HLFSRNFN---------LTNLQWLQLEGNR 303
G L ++ +++ N+ QG HL L NL L L N
Sbjct: 168 QGMKKLSYIRIADTNITTIPQGLPPSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNS 227
Query: 304 FVGEIPQSLSKCSSLEGLYLNNNSLLGKIPRWLGNLTRLQYIIMPNNHLEGPIPVEFC 361
SL+ L L+LNNN L+ K+P L + +Q + + NN++ +FC
Sbjct: 228 ISAVDNGSLANTPHLRELHLNNNKLV-KVPGGLADHKYIQVVYLHNNNISAIGSNDFC 284
Score = 37.0 bits (84), Expect = 0.036, Method: Compositional matrix adjust.
Identities = 32/98 (32%), Positives = 49/98 (50%), Gaps = 2/98 (2%)
Query: 526 NIAYIYQGKVLSLLSGLDLSCNKLIGHIPPQIGNLTRIQTLNLSHNNLTGSIPSTFSNLK 585
NI I QG SL + L L NK+ + L + L LS N+++ + +N
Sbjct: 182 NITTIPQGLPPSL-TELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTP 240
Query: 586 HVESLDLSNNKLNGKIPHQLVELKTLEVFSVAYNNLSG 623
H+ L L+NNKL K+P L + K ++V + NN+S
Sbjct: 241 HLRELHLNNNKL-VKVPGGLADHKYIQVVYLHNNNISA 277
Score = 33.9 bits (76), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 28/92 (30%), Positives = 43/92 (46%), Gaps = 7/92 (7%)
Query: 536 LSLLSGLDLSCNKLIGHIPPQIGNLTRIQTLNLSHNNLTGSIPSTFSNLKHVESLDLSNN 595
L ++ DL K+ +PP L+L +N +T F NLK++ +L L NN
Sbjct: 33 LRVVQCSDLGLEKVPKDLPPDTA------LLDLQNNKITEIKDGDFKNLKNLHTLILINN 86
Query: 596 KLNGKIPHQLVELKTLEVFSVAYNNLSGEIPE 627
K++ P L LE ++ N L E+PE
Sbjct: 87 KISKISPGAFAPLVKLERLYLSKNQLK-ELPE 117
Score = 32.0 bits (71), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 26/74 (35%), Positives = 36/74 (48%), Gaps = 3/74 (4%)
Query: 542 LDLSCNKLIGHIPPQIGNLTRIQTLNLSHNNLTGSIPSTFSNLKHVESLDLSNNKLN--- 598
LDL NK+ NL + TL L +N ++ P F+ L +E L LS N+L
Sbjct: 57 LDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQLKELP 116
Query: 599 GKIPHQLVELKTLE 612
K+P L EL+ E
Sbjct: 117 EKMPKTLQELRVHE 130
Score = 30.4 bits (67), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 36/122 (29%), Positives = 58/122 (47%), Gaps = 7/122 (5%)
Query: 329 LGKIPRWLGNLTRLQYIIMPNNHLEGPIPVEFCQLDSLQILDISDNNISGSLPSCFHPL- 387
L K+P+ L T L + + NN + +F L +L L + +N IS P F PL
Sbjct: 43 LEKVPKDLPPDTAL--LDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLV 100
Query: 388 SIKQVHLSKNMLHGQLKRGTFFNCSSLVTLDLSYNRLNGSIPDWVDGLSQLSHLILGHNN 447
+++++LSKN QLK +L L + N + +GL+Q+ + LG N
Sbjct: 101 KLERLYLSKN----QLKELPEKMPKTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNP 156
Query: 448 LE 449
L+
Sbjct: 157 LK 158
>pdb|1XKU|A Chain A, Crystal Structure Of The Dimeric Protein Core Of Decorin,
The Archetypal Small Leucine-Rich Repeat Proteoglycan
Length = 330
Score = 40.0 bits (92), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 61/238 (25%), Positives = 104/238 (43%), Gaps = 33/238 (13%)
Query: 146 DLEYVDLSHIKMNGEFPNWLLENNTKLETLFLVNDSLAGPFRLPIHSHKRLRQLDVSNNN 205
DL+ ++ IK +G+F N L+N L TL L+N+ ++ +L +L +S N
Sbjct: 58 DLQNNKITEIK-DGDFKN--LKN---LHTLILINNKISKISPGAFAPLVKLERLYLSKNQ 111
Query: 206 IRGHIPVKIGDVLPSLYVFNNSMNALDGSIPSSFGNMKFLQILDLSNNHLTGEIPEHLAV 265
++ +P K+ L L V N + + S+ F + + +++L N L E+ A
Sbjct: 112 LK-ELPEKMPKTLQELRVHENEITKVRKSV---FNGLNQMIVVELGTNPLKSSGIENGAF 167
Query: 266 -GCVNLQFLALSNNNL----QG--------HLFSRNFN---------LTNLQWLQLEGNR 303
G L ++ +++ N+ QG HL L NL L L N
Sbjct: 168 QGMKKLSYIRIADTNITTIPQGLPPSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNS 227
Query: 304 FVGEIPQSLSKCSSLEGLYLNNNSLLGKIPRWLGNLTRLQYIIMPNNHLEGPIPVEFC 361
SL+ L L+LNNN L+ K+P L + +Q + + NN++ +FC
Sbjct: 228 ISAVDNGSLANTPHLRELHLNNNKLV-KVPGGLADHKYIQVVYLHNNNISAIGSNDFC 284
Score = 37.0 bits (84), Expect = 0.039, Method: Compositional matrix adjust.
Identities = 32/98 (32%), Positives = 49/98 (50%), Gaps = 2/98 (2%)
Query: 526 NIAYIYQGKVLSLLSGLDLSCNKLIGHIPPQIGNLTRIQTLNLSHNNLTGSIPSTFSNLK 585
NI I QG SL + L L NK+ + L + L LS N+++ + +N
Sbjct: 182 NITTIPQGLPPSL-TELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTP 240
Query: 586 HVESLDLSNNKLNGKIPHQLVELKTLEVFSVAYNNLSG 623
H+ L L+NNKL K+P L + K ++V + NN+S
Sbjct: 241 HLRELHLNNNKL-VKVPGGLADHKYIQVVYLHNNNISA 277
Score = 33.9 bits (76), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 28/92 (30%), Positives = 43/92 (46%), Gaps = 7/92 (7%)
Query: 536 LSLLSGLDLSCNKLIGHIPPQIGNLTRIQTLNLSHNNLTGSIPSTFSNLKHVESLDLSNN 595
L ++ DL K+ +PP L+L +N +T F NLK++ +L L NN
Sbjct: 33 LRVVQCSDLGLEKVPKDLPPDTA------LLDLQNNKITEIKDGDFKNLKNLHTLILINN 86
Query: 596 KLNGKIPHQLVELKTLEVFSVAYNNLSGEIPE 627
K++ P L LE ++ N L E+PE
Sbjct: 87 KISKISPGAFAPLVKLERLYLSKNQLK-ELPE 117
Score = 32.0 bits (71), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 26/74 (35%), Positives = 36/74 (48%), Gaps = 3/74 (4%)
Query: 542 LDLSCNKLIGHIPPQIGNLTRIQTLNLSHNNLTGSIPSTFSNLKHVESLDLSNNKLN--- 598
LDL NK+ NL + TL L +N ++ P F+ L +E L LS N+L
Sbjct: 57 LDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQLKELP 116
Query: 599 GKIPHQLVELKTLE 612
K+P L EL+ E
Sbjct: 117 EKMPKTLQELRVHE 130
Score = 30.4 bits (67), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 36/122 (29%), Positives = 58/122 (47%), Gaps = 7/122 (5%)
Query: 329 LGKIPRWLGNLTRLQYIIMPNNHLEGPIPVEFCQLDSLQILDISDNNISGSLPSCFHPL- 387
L K+P+ L T L + + NN + +F L +L L + +N IS P F PL
Sbjct: 43 LEKVPKDLPPDTAL--LDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLV 100
Query: 388 SIKQVHLSKNMLHGQLKRGTFFNCSSLVTLDLSYNRLNGSIPDWVDGLSQLSHLILGHNN 447
+++++LSKN QLK +L L + N + +GL+Q+ + LG N
Sbjct: 101 KLERLYLSKN----QLKELPEKMPKTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNP 156
Query: 448 LE 449
L+
Sbjct: 157 LK 158
>pdb|2UZX|A Chain A, Structure Of The Human Receptor Tyrosine Kinase Met In
Complex With The Listeria Monocytogenes Invasion Protein
Inlb: Crystal Form I
pdb|2UZX|C Chain C, Structure Of The Human Receptor Tyrosine Kinase Met In
Complex With The Listeria Monocytogenes Invasion Protein
Inlb: Crystal Form I
pdb|2UZY|A Chain A, Structure Of The Human Receptor Tyrosine Kinase Met In
Complex With The Listeria Monocytogenes Invasion Protein
Inlb: Low Resolution, Crystal Form Ii
pdb|2UZY|C Chain C, Structure Of The Human Receptor Tyrosine Kinase Met In
Complex With The Listeria Monocytogenes Invasion Protein
Inlb: Low Resolution, Crystal Form Ii
pdb|2WQU|A Chain A, Internalin Domain Of Listeria Monocytogenes Inlb:
Triclinic Crystal Form
pdb|2WQU|B Chain B, Internalin Domain Of Listeria Monocytogenes Inlb:
Triclinic Crystal Form
pdb|2WQU|C Chain C, Internalin Domain Of Listeria Monocytogenes Inlb:
Triclinic Crystal Form
pdb|2WQU|D Chain D, Internalin Domain Of Listeria Monocytogenes Inlb:
Triclinic Crystal Form
pdb|2WQU|E Chain E, Internalin Domain Of Listeria Monocytogenes Inlb:
Triclinic Crystal Form
pdb|2WQU|F Chain F, Internalin Domain Of Listeria Monocytogenes Inlb:
Triclinic Crystal Form
pdb|2WQV|A Chain A, Internalin Domain Of Listeria Monocytogenes Inlb:
Rhombohedral Crystal Form
pdb|2WQV|B Chain B, Internalin Domain Of Listeria Monocytogenes Inlb:
Rhombohedral Crystal Form
Length = 289
Score = 39.7 bits (91), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 39/145 (26%), Positives = 64/145 (44%), Gaps = 16/145 (11%)
Query: 5 EVNGVVRSQGLCSLVHLQELYIASNDLRGSLPWCMANMTSLRILDVSSNQLTGSISSSPL 64
E NG+ GL L L+ LY+ +N + ++ +T L L + NQ++ + PL
Sbjct: 118 EHNGISDINGLVHLPQLESLYLGNNKITDIT--VLSRLTKLDTLSLEDNQISDIV---PL 172
Query: 65 VHLTSIEELMLSNNYFQIPISLEPLFNYSRLKIFNAENNEIKAEITESHSLIAPKFQLNT 124
LT ++ L LS N+ +L L N L++F+ E + I +L+ P NT
Sbjct: 173 AGLTKLQNLYLSKNHISDLRALAGLKNLDVLELFSQEC--LNKPINHQSNLVVPNTVKNT 230
Query: 125 LSLSSNYGDG-FIFPKFLYHQHDLE 148
DG + P+ + D E
Sbjct: 231 --------DGSLVTPEIISDDGDYE 247
>pdb|4AW4|A Chain A, Engineered Variant Of Listeria Monocytogenes Inlb
Internalin Domain With An Additional Leucine Rich Repeat
Inserted
pdb|4AW4|B Chain B, Engineered Variant Of Listeria Monocytogenes Inlb
Internalin Domain With An Additional Leucine Rich Repeat
Inserted
pdb|4AW4|C Chain C, Engineered Variant Of Listeria Monocytogenes Inlb
Internalin Domain With An Additional Leucine Rich Repeat
Inserted
Length = 311
Score = 39.7 bits (91), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 39/145 (26%), Positives = 64/145 (44%), Gaps = 16/145 (11%)
Query: 5 EVNGVVRSQGLCSLVHLQELYIASNDLRGSLPWCMANMTSLRILDVSSNQLTGSISSSPL 64
E NG+ GL L L+ LY+ +N + ++ +T L L + NQ++ + PL
Sbjct: 140 EHNGISDINGLVHLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISDIV---PL 194
Query: 65 VHLTSIEELMLSNNYFQIPISLEPLFNYSRLKIFNAENNEIKAEITESHSLIAPKFQLNT 124
LT ++ L LS N+ +L L N L++F+ E + I +L+ P NT
Sbjct: 195 AGLTKLQNLYLSKNHISDLRALAGLKNLDVLELFSQEC--LNKPINHQSNLVVPNTVKNT 252
Query: 125 LSLSSNYGDG-FIFPKFLYHQHDLE 148
DG + P+ + D E
Sbjct: 253 --------DGSLVTPEIISDDGDYE 269
>pdb|1O6S|A Chain A, Internalin (Listeria Monocytogenes) E-Cadherin (Human)
Recognition Complex
pdb|1O6T|A Chain A, Internalin (Inla,Listeria Monocytogenes) - Functional
Domain, Uncomplexed
pdb|1O6V|A Chain A, Internalin (Inla,Listeria Monocytogenes) - Functional
Domain, Uncomplexed
pdb|1O6V|B Chain B, Internalin (Inla,Listeria Monocytogenes) - Functional
Domain, Uncomplexed
Length = 466
Score = 39.3 bits (90), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 53/161 (32%), Positives = 85/161 (52%), Gaps = 17/161 (10%)
Query: 290 NLTNLQWLQLEGNRFVGEIPQSLSKCSSLEGLYLNNNSLLGKIPRWLGNLTRLQYIIMPN 349
NLTNL L+L N + +I +LS +SL+ L N + L NLT L+ + + +
Sbjct: 132 NLTNLNRLELSSNT-ISDI-SALSGLTSLQQLSFGNQV---TDLKPLANLTTLERLDISS 186
Query: 350 NHLEGPIPVEFCQLDSLQILDISDNNISGSLPSCFHPLSIKQVHLSKNMLHG-QLKR-GT 407
N + I V +L +L+ L ++N IS PL I +L + L+G QLK GT
Sbjct: 187 NKVSD-ISV-LAKLTNLESLIATNNQISD-----ITPLGI-LTNLDELSLNGNQLKDIGT 238
Query: 408 FFNCSSLVTLDLSYNRLNGSIPDWVDGLSQLSHLILGHNNL 448
+ ++L LDL+ N+++ P + GL++L+ L LG N +
Sbjct: 239 LASLTNLTDLDLANNQISNLAP--LSGLTKLTELKLGANQI 277
Score = 32.3 bits (72), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 30/102 (29%), Positives = 50/102 (49%), Gaps = 13/102 (12%)
Query: 7 NGVVRSQGLCSLVHLQELYIAS--NDLRGSLPWCMANMTSLRILDVSSNQLTGSISSSPL 64
N + L L LQ+L + DL+ +AN+T+L LD+SSN+++ S L
Sbjct: 144 NTISDISALSGLTSLQQLSFGNQVTDLK-----PLANLTTLERLDISSNKVS---DISVL 195
Query: 65 VHLTSIEELMLSNNYFQIPISLEPLFNYSRLKIFNAENNEIK 106
LT++E L+ +NN + PL + L + N++K
Sbjct: 196 AKLTNLESLIATNNQIS---DITPLGILTNLDELSLNGNQLK 234
Score = 30.8 bits (68), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 80/337 (23%), Positives = 138/337 (40%), Gaps = 60/337 (17%)
Query: 15 LCSLVHLQELYIASNDLRGSLPWCMANMTSLRILDVSSNQLTGSISSSPLVHLTSIEELM 74
L +L L ++ + +N + P +AN+T+L L + +NQ+T PL +LT++ L
Sbjct: 86 LKNLTKLVDILMNNNQIADITP--LANLTNLTGLTLFNNQIT---DIDPLKNLTNLNRLE 140
Query: 75 LSNNYF-------------------QIPISLEPLFNYSRLKIFNAENNEIK-----AEIT 110
LS+N Q+ L+PL N + L+ + +N++ A++T
Sbjct: 141 LSSNTISDISALSGLTSLQQLSFGNQV-TDLKPLANLTTLERLDISSNKVSDISVLAKLT 199
Query: 111 ESHSLIAPKFQLNTLSLSSNYGDGFIFPKFLYHQHDLEYVDLSHIKMNGEFPNWLLENNT 170
SLIA Q++ I P + D ++ + +K G + T
Sbjct: 200 NLESLIATNNQISD-----------ITPLGILTNLDELSLNGNQLKDIGTLASL-----T 243
Query: 171 KLETLFLVNDSLAGPFRLPIHSHKRLRQLDVSNNNIRGHIPVKIGDVLPSLYVFNNSMNA 230
L L L N+ ++ P+ +L +L + N I P+ L +L + N +
Sbjct: 244 NLTDLDLANNQISN--LAPLSGLTKLTELKLGANQISNISPLAGLTALTNLELNENQLED 301
Query: 231 LDGSIPSSFGNMKFLQILDLSNNHLTGEIPEHLAVGCVNLQFLALSNNNLQGHLFSRNFN 290
+ S N+K L L L N+++ P LQ L NN + S N
Sbjct: 302 I-----SPISNLKNLTYLTLYFNNISDISP---VSSLTKLQRLFFYNNKVSD--VSSLAN 351
Query: 291 LTNLQWLQLEGNRFVGEIPQSLSKCSSLEGLYLNNNS 327
LTN+ WL N+ P L+ + + L LN+ +
Sbjct: 352 LTNINWLSAGHNQISDLTP--LANLTRITQLGLNDQA 386
Score = 30.4 bits (67), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 79/312 (25%), Positives = 130/312 (41%), Gaps = 36/312 (11%)
Query: 42 MTSLRILDVSSNQLTGSISSSPLVHLTSIEELMLSNNYFQIPISLEPLFNYSRLKIFNAE 101
+ +L ++ S+NQLT +PL +LT + +++++NN L L N + L +FN +
Sbjct: 67 LNNLTQINFSNNQLT---DITPLKNLTKLVDILMNNNQIADITPLANLTNLTGLTLFNNQ 123
Query: 102 NNEIKAEITESHSLIAPKFQLNTLSLSSNYGDGFIFPKFLYHQHDLEYVD-LSHIKMNGE 160
+I + LN L LSSN L L + + ++ +K
Sbjct: 124 ITDIDP--------LKNLTNLNRLELSSNTISDISALSGLTSLQQLSFGNQVTDLKP--- 172
Query: 161 FPNWLLENNTKLETLFLVNDSLAGPFRLPIHSHKRLRQLDVSNNNIRGHIPVKIGDVLPS 220
L N T LE L + ++ ++ L ++ L L +NN I P+ I L
Sbjct: 173 -----LANLTTLERLDISSNKVSDISVLAKLTN--LESLIATNNQISDITPLGILTNLDE 225
Query: 221 LYVFNNSMNALDGSIPSSFGNMKFLQILDLSNNHLTGEIPEHLAVGCVNLQFLALSNNNL 280
L + N + + + ++ L LDL+NN ++ P G L L L N +
Sbjct: 226 LSLNGNQLKDI-----GTLASLTNLTDLDLANNQISNLAPLS---GLTKLTELKLGANQI 277
Query: 281 QGHLFSRNFNLTNLQWLQLEGNRFVGEIPQSLSKCSSLEGLYLNNNSLLGKIPRWLGNLT 340
S LT L L+L N+ P S K + LY NN S + + +LT
Sbjct: 278 SN--ISPLAGLTALTNLELNENQLEDISPISNLKNLTYLTLYFNNISDISPV----SSLT 331
Query: 341 RLQYIIMPNNHL 352
+LQ + NN +
Sbjct: 332 KLQRLFFYNNKV 343
>pdb|1OTN|A Chain A, Calcium-Binding Mutant Of The Internalin B Lrr Domain
Length = 236
Score = 39.3 bits (90), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 29/97 (29%), Positives = 48/97 (49%), Gaps = 5/97 (5%)
Query: 5 EVNGVVRSQGLCSLVHLQELYIASNDLRGSLPWCMANMTSLRILDVSSNQLTGSISSSPL 64
E NG+ GL L L+ LY+ +N + ++ +T L L + NQ++ + PL
Sbjct: 138 EHNGISDINGLVHLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISDIV---PL 192
Query: 65 VHLTSIEELMLSNNYFQIPISLEPLFNYSRLKIFNAE 101
LT ++ L LS N+ +L L N L++F+ E
Sbjct: 193 AGLTKLQNLYLSKNHISDLRALAGLKNLDVLELFSQE 229
>pdb|1OTO|A Chain A, Calcium-Binding Mutant Of The Internalin B Lrr Domain
Length = 236
Score = 39.3 bits (90), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 29/97 (29%), Positives = 48/97 (49%), Gaps = 5/97 (5%)
Query: 5 EVNGVVRSQGLCSLVHLQELYIASNDLRGSLPWCMANMTSLRILDVSSNQLTGSISSSPL 64
E NG+ GL L L+ LY+ +N + ++ +T L L + NQ++ + PL
Sbjct: 138 EHNGISDINGLVHLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISDIV---PL 192
Query: 65 VHLTSIEELMLSNNYFQIPISLEPLFNYSRLKIFNAE 101
LT ++ L LS N+ +L L N L++F+ E
Sbjct: 193 AGLTKLQNLYLSKNHISDLRALAGLKNLDVLELFSQE 229
>pdb|1D0B|A Chain A, Internalin B Leucine Rich Repeat Domain
Length = 213
Score = 39.3 bits (90), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 29/97 (29%), Positives = 48/97 (49%), Gaps = 5/97 (5%)
Query: 5 EVNGVVRSQGLCSLVHLQELYIASNDLRGSLPWCMANMTSLRILDVSSNQLTGSISSSPL 64
E NG+ GL L L+ LY+ +N + ++ +T L L + NQ++ + PL
Sbjct: 115 EHNGISDINGLVHLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISDIV---PL 169
Query: 65 VHLTSIEELMLSNNYFQIPISLEPLFNYSRLKIFNAE 101
LT ++ L LS N+ +L L N L++F+ E
Sbjct: 170 AGLTKLQNLYLSKNHISDLRALAGLKNLDVLELFSQE 206
>pdb|1M9S|A Chain A, Crystal Structure Of Internalin B (Inlb), A Listeria
Monocytogenes Virulence Protein Containing Sh3-Like
Domains
Length = 605
Score = 39.3 bits (90), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 29/97 (29%), Positives = 48/97 (49%), Gaps = 5/97 (5%)
Query: 5 EVNGVVRSQGLCSLVHLQELYIASNDLRGSLPWCMANMTSLRILDVSSNQLTGSISSSPL 64
E NG+ GL L L+ LY+ +N + ++ +T L L + NQ++ + PL
Sbjct: 117 EHNGISDINGLVHLPQLESLYLGNNKITDIT--VLSRLTKLDTLSLEDNQISDIV---PL 171
Query: 65 VHLTSIEELMLSNNYFQIPISLEPLFNYSRLKIFNAE 101
LT ++ L LS N+ +L L N L++F+ E
Sbjct: 172 AGLTKLQNLYLSKNHISDLRALAGLKNLDVLELFSQE 208
>pdb|2OMZ|A Chain A, Crystal Structure Of Inla Y369a/hec1 Complex
Length = 466
Score = 39.3 bits (90), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 53/161 (32%), Positives = 85/161 (52%), Gaps = 17/161 (10%)
Query: 290 NLTNLQWLQLEGNRFVGEIPQSLSKCSSLEGLYLNNNSLLGKIPRWLGNLTRLQYIIMPN 349
NLTNL L+L N + +I +LS +SL+ L N + L NLT L+ + + +
Sbjct: 131 NLTNLNRLELSSNT-ISDI-SALSGLTSLQQLSFGNQV---TDLKPLANLTTLERLDISS 185
Query: 350 NHLEGPIPVEFCQLDSLQILDISDNNISGSLPSCFHPLSIKQVHLSKNMLHG-QLKR-GT 407
N + I V +L +L+ L ++N IS PL I +L + L+G QLK GT
Sbjct: 186 NKVSD-ISV-LAKLTNLESLIATNNQISD-----ITPLGI-LTNLDELSLNGNQLKDIGT 237
Query: 408 FFNCSSLVTLDLSYNRLNGSIPDWVDGLSQLSHLILGHNNL 448
+ ++L LDL+ N+++ P + GL++L+ L LG N +
Sbjct: 238 LASLTNLTDLDLANNQISNLAP--LSGLTKLTELKLGANQI 276
Score = 32.3 bits (72), Expect = 0.94, Method: Compositional matrix adjust.
Identities = 80/337 (23%), Positives = 139/337 (41%), Gaps = 60/337 (17%)
Query: 15 LCSLVHLQELYIASNDLRGSLPWCMANMTSLRILDVSSNQLTGSISSSPLVHLTSIEELM 74
L +L L ++ + +N + P +AN+T+L L + +NQ+T PL +LT++ L
Sbjct: 85 LKNLTKLVDILMNNNQIADITP--LANLTNLTGLTLFNNQIT---DIDPLKNLTNLNRLE 139
Query: 75 LSNNYF-------------------QIPISLEPLFNYSRLKIFNAENNEIK-----AEIT 110
LS+N Q+ L+PL N + L+ + +N++ A++T
Sbjct: 140 LSSNTISDISALSGLTSLQQLSFGNQV-TDLKPLANLTTLERLDISSNKVSDISVLAKLT 198
Query: 111 ESHSLIAPKFQLNTLSLSSNYGDGFIFPKFLYHQHDLEYVDLSHIKMNGEFPNWLLENNT 170
SLIA Q++ I P + D ++ + +K G + T
Sbjct: 199 NLESLIATNNQISD-----------ITPLGILTNLDELSLNGNQLKDIGTLASL-----T 242
Query: 171 KLETLFLVNDSLAGPFRLPIHSHKRLRQLDVSNNNIRGHIPVKIGDVLPSLYVFNNSMNA 230
L L L N+ ++ P+ +L +L + N I P+ L +L + N +
Sbjct: 243 NLTDLDLANNQISN--LAPLSGLTKLTELKLGANQISNISPLAGLTALTNLELNENQLED 300
Query: 231 LDGSIPSSFGNMKFLQILDLSNNHLTGEIPEHLAVGCVNLQFLALSNNNLQGHLFSRNFN 290
+ S N+K L L L N+++ P LQ L +NN + S N
Sbjct: 301 I-----SPISNLKNLTYLTLYFNNISDISP---VSSLTKLQRLFFANNKVSD--VSSLAN 350
Query: 291 LTNLQWLQLEGNRFVGEIPQSLSKCSSLEGLYLNNNS 327
LTN+ WL N+ P L+ + + L LN+ +
Sbjct: 351 LTNINWLSAGHNQISDLTP--LANLTRITQLGLNDQA 385
Score = 32.3 bits (72), Expect = 0.99, Method: Compositional matrix adjust.
Identities = 30/102 (29%), Positives = 50/102 (49%), Gaps = 13/102 (12%)
Query: 7 NGVVRSQGLCSLVHLQELYIAS--NDLRGSLPWCMANMTSLRILDVSSNQLTGSISSSPL 64
N + L L LQ+L + DL+ +AN+T+L LD+SSN+++ S L
Sbjct: 143 NTISDISALSGLTSLQQLSFGNQVTDLK-----PLANLTTLERLDISSNKVS---DISVL 194
Query: 65 VHLTSIEELMLSNNYFQIPISLEPLFNYSRLKIFNAENNEIK 106
LT++E L+ +NN + PL + L + N++K
Sbjct: 195 AKLTNLESLIATNNQIS---DITPLGILTNLDELSLNGNQLK 233
Score = 31.6 bits (70), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 79/312 (25%), Positives = 130/312 (41%), Gaps = 36/312 (11%)
Query: 42 MTSLRILDVSSNQLTGSISSSPLVHLTSIEELMLSNNYFQIPISLEPLFNYSRLKIFNAE 101
+ +L ++ S+NQLT +PL +LT + +++++NN L L N + L +FN +
Sbjct: 66 LNNLTQINFSNNQLT---DITPLKNLTKLVDILMNNNQIADITPLANLTNLTGLTLFNNQ 122
Query: 102 NNEIKAEITESHSLIAPKFQLNTLSLSSNYGDGFIFPKFLYHQHDLEYVD-LSHIKMNGE 160
+I + LN L LSSN L L + + ++ +K
Sbjct: 123 ITDIDP--------LKNLTNLNRLELSSNTISDISALSGLTSLQQLSFGNQVTDLKP--- 171
Query: 161 FPNWLLENNTKLETLFLVNDSLAGPFRLPIHSHKRLRQLDVSNNNIRGHIPVKIGDVLPS 220
L N T LE L + ++ ++ L ++ L L +NN I P+ I L
Sbjct: 172 -----LANLTTLERLDISSNKVSDISVLAKLTN--LESLIATNNQISDITPLGILTNLDE 224
Query: 221 LYVFNNSMNALDGSIPSSFGNMKFLQILDLSNNHLTGEIPEHLAVGCVNLQFLALSNNNL 280
L + N + + + ++ L LDL+NN ++ P G L L L N +
Sbjct: 225 LSLNGNQLKDI-----GTLASLTNLTDLDLANNQISNLAPLS---GLTKLTELKLGANQI 276
Query: 281 QGHLFSRNFNLTNLQWLQLEGNRFVGEIPQSLSKCSSLEGLYLNNNSLLGKIPRWLGNLT 340
S LT L L+L N+ P S K + LY NN S + + +LT
Sbjct: 277 SN--ISPLAGLTALTNLELNENQLEDISPISNLKNLTYLTLYFNNISDISPV----SSLT 330
Query: 341 RLQYIIMPNNHL 352
+LQ + NN +
Sbjct: 331 KLQRLFFANNKV 342
>pdb|1OTM|A Chain A, Calcium-Binding Mutant Of The Internalin B Lrr Domain
Length = 236
Score = 39.3 bits (90), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 29/97 (29%), Positives = 48/97 (49%), Gaps = 5/97 (5%)
Query: 5 EVNGVVRSQGLCSLVHLQELYIASNDLRGSLPWCMANMTSLRILDVSSNQLTGSISSSPL 64
E NG+ GL L L+ LY+ +N + ++ +T L L + NQ++ + PL
Sbjct: 138 EHNGISDINGLVHLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISDIV---PL 192
Query: 65 VHLTSIEELMLSNNYFQIPISLEPLFNYSRLKIFNAE 101
LT ++ L LS N+ +L L N L++F+ E
Sbjct: 193 AGLTKLQNLYLSKNHISDLRALAGLKNLDVLELFSQE 229
>pdb|2OMV|A Chain A, Crystal Structure Of Inla S192n Y369s/hec1 Complex
pdb|2OMW|A Chain A, Crystal Structure Of Inla S192n Y369s/mec1 Complex
Length = 461
Score = 39.3 bits (90), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 53/161 (32%), Positives = 85/161 (52%), Gaps = 17/161 (10%)
Query: 290 NLTNLQWLQLEGNRFVGEIPQSLSKCSSLEGLYLNNNSLLGKIPRWLGNLTRLQYIIMPN 349
NLTNL L+L N + +I +LS +SL+ L N + L NLT L+ + + +
Sbjct: 127 NLTNLNRLELSSNT-ISDI-SALSGLTSLQQLNFGNQV---TDLKPLANLTTLERLDISS 181
Query: 350 NHLEGPIPVEFCQLDSLQILDISDNNISGSLPSCFHPLSIKQVHLSKNMLHG-QLKR-GT 407
N + I V +L +L+ L ++N IS PL I +L + L+G QLK GT
Sbjct: 182 NKVSD-ISV-LAKLTNLESLIATNNQISD-----ITPLGI-LTNLDELSLNGNQLKDIGT 233
Query: 408 FFNCSSLVTLDLSYNRLNGSIPDWVDGLSQLSHLILGHNNL 448
+ ++L LDL+ N+++ P + GL++L+ L LG N +
Sbjct: 234 LASLTNLTDLDLANNQISNLAP--LSGLTKLTELKLGANQI 272
Score = 33.1 bits (74), Expect = 0.55, Method: Compositional matrix adjust.
Identities = 81/337 (24%), Positives = 138/337 (40%), Gaps = 60/337 (17%)
Query: 15 LCSLVHLQELYIASNDLRGSLPWCMANMTSLRILDVSSNQLTGSISSSPLVHLTSIEELM 74
L +L L ++ + +N + P +AN+T+L L + +NQ+T PL +LT++ L
Sbjct: 81 LKNLTKLVDILMNNNQIADITP--LANLTNLTGLTLFNNQIT---DIDPLKNLTNLNRLE 135
Query: 75 LSNNYF-------------------QIPISLEPLFNYSRLKIFNAENNEIK-----AEIT 110
LS+N Q+ L+PL N + L+ + +N++ A++T
Sbjct: 136 LSSNTISDISALSGLTSLQQLNFGNQV-TDLKPLANLTTLERLDISSNKVSDISVLAKLT 194
Query: 111 ESHSLIAPKFQLNTLSLSSNYGDGFIFPKFLYHQHDLEYVDLSHIKMNGEFPNWLLENNT 170
SLIA Q+ I P + D ++ + +K G + T
Sbjct: 195 NLESLIATNNQI-----------SDITPLGILTNLDELSLNGNQLKDIGTLASL-----T 238
Query: 171 KLETLFLVNDSLAGPFRLPIHSHKRLRQLDVSNNNIRGHIPVKIGDVLPSLYVFNNSMNA 230
L L L N+ ++ P+ +L +L + N I P+ L +L + N +
Sbjct: 239 NLTDLDLANNQISN--LAPLSGLTKLTELKLGANQISNISPLAGLTALTNLELNENQLED 296
Query: 231 LDGSIPSSFGNMKFLQILDLSNNHLTGEIPEHLAVGCVNLQFLALSNNNLQGHLFSRNFN 290
+ S N+K L L L N+++ P LQ L SNN + S N
Sbjct: 297 I-----SPISNLKNLTYLTLYFNNISDISP---VSSLTKLQRLFFSNNKVSD--VSSLAN 346
Query: 291 LTNLQWLQLEGNRFVGEIPQSLSKCSSLEGLYLNNNS 327
LTN+ WL N+ P L+ + + L LN+ +
Sbjct: 347 LTNINWLSAGHNQISDLTP--LANLTRITQLGLNDQA 381
Score = 32.0 bits (71), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 29/93 (31%), Positives = 45/93 (48%), Gaps = 10/93 (10%)
Query: 7 NGVVRSQGLCSLVHLQELYIAS--NDLRGSLPWCMANMTSLRILDVSSNQLTGSISSSPL 64
N + L L LQ+L + DL+ +AN+T+L LD+SSN+++ S L
Sbjct: 139 NTISDISALSGLTSLQQLNFGNQVTDLK-----PLANLTTLERLDISSNKVS---DISVL 190
Query: 65 VHLTSIEELMLSNNYFQIPISLEPLFNYSRLKI 97
LT++E L+ +NN L L N L +
Sbjct: 191 AKLTNLESLIATNNQISDITPLGILTNLDELSL 223
Score = 31.6 bits (70), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 82/330 (24%), Positives = 146/330 (44%), Gaps = 38/330 (11%)
Query: 42 MTSLRILDVSSNQLTGSISSSPLVHLTSIEELMLSNNYFQIPISLEPLFNYSRLKIFNAE 101
+ +L ++ S+NQLT +PL +LT + +++++NN L L N + L +FN +
Sbjct: 62 LNNLTQINFSNNQLT---DITPLKNLTKLVDILMNNNQIADITPLANLTNLTGLTLFNNQ 118
Query: 102 NNEIK--AEITESHSLIAPKFQLNTLS-------LSS----NYGDGFIFPKFLYHQHDLE 148
+I +T + L + NT+S L+S N+G+ K L + LE
Sbjct: 119 ITDIDPLKNLTNLNRL---ELSSNTISDISALSGLTSLQQLNFGNQVTDLKPLANLTTLE 175
Query: 149 YVDLSHIKMNGEFPNWLLENNTKLETLFLVNDSLAGPFRLPIHSHKRLRQLDVSNNNIRG 208
+D+S K++ +L T LE+L N+ ++ L I ++ L +L ++ N ++
Sbjct: 176 RLDISSNKVSDI---SVLAKLTNLESLIATNNQISDITPLGILTN--LDELSLNGNQLKD 230
Query: 209 HIPVKIGDVLPSLYVFNNSMNALDGSIPSSFGNMKFLQILDLSNNHLTGEIPEHLAVGCV 268
+ L L + NN ++ L + + L L L N ++ P G
Sbjct: 231 IGTLASLTNLTDLDLANNQISNL-----APLSGLTKLTELKLGANQISNISP---LAGLT 282
Query: 269 NLQFLALSNNNLQGHLFSRNFNLTNLQWLQLEGNRFVGEIPQSLSKCSSLEGLYLNNNSL 328
L L L+ N L+ S NL NL +L L N P +S + L+ L+ +NN +
Sbjct: 283 ALTNLELNENQLED--ISPISNLKNLTYLTLYFNNISDISP--VSSLTKLQRLFFSNNKV 338
Query: 329 LGKIPRWLGNLTRLQYIIMPNNHLEGPIPV 358
L NLT + ++ +N + P+
Sbjct: 339 --SDVSSLANLTNINWLSAGHNQISDLTPL 366
>pdb|2OMY|A Chain A, Crystal Structure Of Inla S192n/hec1 Complex
Length = 461
Score = 39.3 bits (90), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 53/161 (32%), Positives = 85/161 (52%), Gaps = 17/161 (10%)
Query: 290 NLTNLQWLQLEGNRFVGEIPQSLSKCSSLEGLYLNNNSLLGKIPRWLGNLTRLQYIIMPN 349
NLTNL L+L N + +I +LS +SL+ L N + L NLT L+ + + +
Sbjct: 127 NLTNLNRLELSSNT-ISDI-SALSGLTSLQQLNFGNQV---TDLKPLANLTTLERLDISS 181
Query: 350 NHLEGPIPVEFCQLDSLQILDISDNNISGSLPSCFHPLSIKQVHLSKNMLHG-QLKR-GT 407
N + I V +L +L+ L ++N IS PL I +L + L+G QLK GT
Sbjct: 182 NKVSD-ISV-LAKLTNLESLIATNNQISD-----ITPLGI-LTNLDELSLNGNQLKDIGT 233
Query: 408 FFNCSSLVTLDLSYNRLNGSIPDWVDGLSQLSHLILGHNNL 448
+ ++L LDL+ N+++ P + GL++L+ L LG N +
Sbjct: 234 LASLTNLTDLDLANNQISNLAP--LSGLTKLTELKLGANQI 272
Score = 32.0 bits (71), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 29/93 (31%), Positives = 45/93 (48%), Gaps = 10/93 (10%)
Query: 7 NGVVRSQGLCSLVHLQELYIAS--NDLRGSLPWCMANMTSLRILDVSSNQLTGSISSSPL 64
N + L L LQ+L + DL+ +AN+T+L LD+SSN+++ S L
Sbjct: 139 NTISDISALSGLTSLQQLNFGNQVTDLK-----PLANLTTLERLDISSNKVS---DISVL 190
Query: 65 VHLTSIEELMLSNNYFQIPISLEPLFNYSRLKI 97
LT++E L+ +NN L L N L +
Sbjct: 191 AKLTNLESLIATNNQISDITPLGILTNLDELSL 223
Score = 30.4 bits (67), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 80/337 (23%), Positives = 137/337 (40%), Gaps = 60/337 (17%)
Query: 15 LCSLVHLQELYIASNDLRGSLPWCMANMTSLRILDVSSNQLTGSISSSPLVHLTSIEELM 74
L +L L ++ + +N + P +AN+T+L L + +NQ+T PL +LT++ L
Sbjct: 81 LKNLTKLVDILMNNNQIADITP--LANLTNLTGLTLFNNQIT---DIDPLKNLTNLNRLE 135
Query: 75 LSNNYF-------------------QIPISLEPLFNYSRLKIFNAENNEIK-----AEIT 110
LS+N Q+ L+PL N + L+ + +N++ A++T
Sbjct: 136 LSSNTISDISALSGLTSLQQLNFGNQV-TDLKPLANLTTLERLDISSNKVSDISVLAKLT 194
Query: 111 ESHSLIAPKFQLNTLSLSSNYGDGFIFPKFLYHQHDLEYVDLSHIKMNGEFPNWLLENNT 170
SLIA Q+ I P + D ++ + +K G + T
Sbjct: 195 NLESLIATNNQI-----------SDITPLGILTNLDELSLNGNQLKDIGTLASL-----T 238
Query: 171 KLETLFLVNDSLAGPFRLPIHSHKRLRQLDVSNNNIRGHIPVKIGDVLPSLYVFNNSMNA 230
L L L N+ ++ P+ +L +L + N I P+ L +L + N +
Sbjct: 239 NLTDLDLANNQISN--LAPLSGLTKLTELKLGANQISNISPLAGLTALTNLELNENQLED 296
Query: 231 LDGSIPSSFGNMKFLQILDLSNNHLTGEIPEHLAVGCVNLQFLALSNNNLQGHLFSRNFN 290
+ S N+K L L L N+++ P LQ L NN + S N
Sbjct: 297 I-----SPISNLKNLTYLTLYFNNISDISP---VSSLTKLQRLFFYNNKVSD--VSSLAN 346
Query: 291 LTNLQWLQLEGNRFVGEIPQSLSKCSSLEGLYLNNNS 327
LTN+ WL N+ P L+ + + L LN+ +
Sbjct: 347 LTNINWLSAGHNQISDLTP--LANLTRITQLGLNDQA 381
Score = 30.0 bits (66), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 82/330 (24%), Positives = 145/330 (43%), Gaps = 38/330 (11%)
Query: 42 MTSLRILDVSSNQLTGSISSSPLVHLTSIEELMLSNNYFQIPISLEPLFNYSRLKIFNAE 101
+ +L ++ S+NQLT +PL +LT + +++++NN L L N + L +FN +
Sbjct: 62 LNNLTQINFSNNQLT---DITPLKNLTKLVDILMNNNQIADITPLANLTNLTGLTLFNNQ 118
Query: 102 NNEIK--AEITESHSLIAPKFQLNTLS-------LSS----NYGDGFIFPKFLYHQHDLE 148
+I +T + L + NT+S L+S N+G+ K L + LE
Sbjct: 119 ITDIDPLKNLTNLNRL---ELSSNTISDISALSGLTSLQQLNFGNQVTDLKPLANLTTLE 175
Query: 149 YVDLSHIKMNGEFPNWLLENNTKLETLFLVNDSLAGPFRLPIHSHKRLRQLDVSNNNIRG 208
+D+S K++ +L T LE+L N+ ++ L I ++ L +L ++ N ++
Sbjct: 176 RLDISSNKVSDI---SVLAKLTNLESLIATNNQISDITPLGILTN--LDELSLNGNQLKD 230
Query: 209 HIPVKIGDVLPSLYVFNNSMNALDGSIPSSFGNMKFLQILDLSNNHLTGEIPEHLAVGCV 268
+ L L + NN ++ L + + L L L N ++ P G
Sbjct: 231 IGTLASLTNLTDLDLANNQISNL-----APLSGLTKLTELKLGANQISNISP---LAGLT 282
Query: 269 NLQFLALSNNNLQGHLFSRNFNLTNLQWLQLEGNRFVGEIPQSLSKCSSLEGLYLNNNSL 328
L L L+ N L+ S NL NL +L L N P +S + L+ L+ NN +
Sbjct: 283 ALTNLELNENQLED--ISPISNLKNLTYLTLYFNNISDISP--VSSLTKLQRLFFYNNKV 338
Query: 329 LGKIPRWLGNLTRLQYIIMPNNHLEGPIPV 358
L NLT + ++ +N + P+
Sbjct: 339 --SDVSSLANLTNINWLSAGHNQISDLTPL 366
>pdb|2WQW|A Chain A, Double-Disulfide Cross-Linked Crystal Dimer Of The
Listeria Monocytogenes Inlb Internalin Domain
pdb|2WQW|B Chain B, Double-Disulfide Cross-Linked Crystal Dimer Of The
Listeria Monocytogenes Inlb Internalin Domain
Length = 286
Score = 39.3 bits (90), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 39/145 (26%), Positives = 64/145 (44%), Gaps = 16/145 (11%)
Query: 5 EVNGVVRSQGLCSLVHLQELYIASNDLRGSLPWCMANMTSLRILDVSSNQLTGSISSSPL 64
E NG+ GL L L+ LY+ +N + ++ +T L L + NQ++ + PL
Sbjct: 115 EHNGISDINGLVHLPQLESLYLGNNKITDIT--VLSRLTKLDTLSLEDNQISDIV---PL 169
Query: 65 VHLTSIEELMLSNNYFQIPISLEPLFNYSRLKIFNAENNEIKAEITESHSLIAPKFQLNT 124
LT ++ L LS N+ +L L N L++F+ E + I +L+ P NT
Sbjct: 170 ACLTKLQNLYLSKNHISDLRALCGLKNLDVLELFSQE--ALNKPINHQSNLVVPNTVKNT 227
Query: 125 LSLSSNYGDG-FIFPKFLYHQHDLE 148
DG + P+ + D E
Sbjct: 228 --------DGSLVTPEIISDDGDYE 244
>pdb|3ZYN|A Chain A, Crystal Structure Of The N-Terminal Leucine Rich Repeats
Of Netrin-G Ligand-3
pdb|3ZYN|B Chain B, Crystal Structure Of The N-Terminal Leucine Rich Repeats
Of Netrin-G Ligand-3
Length = 321
Score = 38.9 bits (89), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 67/267 (25%), Positives = 107/267 (40%), Gaps = 64/267 (23%)
Query: 213 KIGDVLPSLYVFNNSMNALDGSI----PSSFGNMKFLQILDLSNNHLTGEIPEHLAVGCV 268
++ +V S+ V +N + SI +F +++ L+IL LS N + + VG
Sbjct: 25 ELAEVPASIPVNTRYLNLQENSIQVIRTDTFKHLRHLEILQLSKN-----LVRKIEVGAF 79
Query: 269 NLQFLALSNNNLQGHLFSRNFNLTNLQWLQLEGNRFVGEIPQSLSKCSSLEGLYLNNNSL 328
N L +L L+L NR Q+ S L L+L NN +
Sbjct: 80 N--------------------GLPSLNTLELFDNRLTTVPTQAFEYLSKLRELWLRNNPI 119
Query: 329 -------LGKIPRW----LGNLTRLQYIIMPNNHLEGPIPVEF-----CQLDS------- 365
++P LG L RL+YI EG + + + C L
Sbjct: 120 ESIPSYAFNRVPSLRRLDLGELKRLEYI--SEAAFEGLVNLRYLNLGMCNLKDIPNLTAL 177
Query: 366 --LQILDISDNNISGSLPSCFHPL-SIKQVHLSKNMLHGQ---LKRGTFFNCSSLVTLDL 419
L+ L++S N + P F L S++++ L +H Q ++R F + SL L+L
Sbjct: 178 VRLEELELSGNRLDLIRPGSFQGLTSLRKLWL----MHAQVATIERNAFDDLKSLEELNL 233
Query: 420 SYNRLNGSIPDWVDGLSQLSHLILGHN 446
S+N L D L +L + L HN
Sbjct: 234 SHNNLMSLPHDLFTPLHRLERVHLNHN 260
Score = 33.1 bits (74), Expect = 0.49, Method: Compositional matrix adjust.
Identities = 61/240 (25%), Positives = 96/240 (40%), Gaps = 33/240 (13%)
Query: 367 QILDISDNNISGSLPSCF-HPLSIKQVHLSKNMLHGQLKRGTFFNCSSLVTLDLSYNRLN 425
+ L++ +N+I F H ++ + LSKN++ +++ G F SL TL+L NRL
Sbjct: 38 RYLNLQENSIQVIRTDTFKHLRHLEILQLSKNLVR-KIEVGAFNGLPSLNTLELFDNRLT 96
Query: 426 GSIPDWVDGLSQLSHLILGHNNLEGEVSVXXXXXXXXXXXXXXXXXXHGPIPPCFDNTTL 485
+ LS+L L L +N +E S P L
Sbjct: 97 TVPTQAFEYLSKLRELWLRNNPIESIPSYAFNRV------------------PSLRRLDL 138
Query: 486 HESYSNSSSPDEQFEIFFSIEGHQGFLEKQNHEIFEFTTKNIAYIYQGKVLSLLSGLDLS 545
E ++ E + S +G + N N+ I L L L+LS
Sbjct: 139 GEL--------KRLE-YISEAAFEGLV---NLRYLNLGMCNLKDIPNLTALVRLEELELS 186
Query: 546 CNKLIGHIPPQIGNLTRIQTLNLSHNNLTGSIPSTFSNLKHVESLDLSNNKLNGKIPHQL 605
N+L P LT ++ L L H + + F +LK +E L+LS+N L +PH L
Sbjct: 187 GNRLDLIRPGSFQGLTSLRKLWLMHAQVATIERNAFDDLKSLEELNLSHNNLMS-LPHDL 245
Score = 32.3 bits (72), Expect = 0.88, Method: Compositional matrix adjust.
Identities = 30/85 (35%), Positives = 43/85 (50%), Gaps = 3/85 (3%)
Query: 15 LCSLVHLQELYIASNDLRGSLPWCMANMTSLRILDVSSNQLTGSISSSPLVHLTSIEELM 74
L +LV L+EL ++ N L P +TSLR L + Q+ +I + L S+EEL
Sbjct: 174 LTALVRLEELELSGNRLDLIRPGSFQGLTSLRKLWLMHAQV-ATIERNAFDDLKSLEELN 232
Query: 75 LS-NNYFQIPISL-EPLFNYSRLKI 97
LS NN +P L PL R+ +
Sbjct: 233 LSHNNLMSLPHDLFTPLHRLERVHL 257
Score = 30.8 bits (68), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 20/67 (29%), Positives = 35/67 (52%)
Query: 555 PQIGNLTRIQTLNLSHNNLTGSIPSTFSNLKHVESLDLSNNKLNGKIPHQLVELKTLEVF 614
P + L R++ L LS N L P +F L + L L + ++ + +LK+LE
Sbjct: 172 PNLTALVRLEELELSGNRLDLIRPGSFQGLTSLRKLWLMHAQVATIERNAFDDLKSLEEL 231
Query: 615 SVAYNNL 621
++++NNL
Sbjct: 232 NLSHNNL 238
Score = 30.4 bits (67), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 24/87 (27%), Positives = 44/87 (50%), Gaps = 5/87 (5%)
Query: 9 VVRSQGLCSLVHLQELYIASNDLRGSLPWCMANMTSLRILDVSSNQLTGSISSSPLVHLT 68
V+R+ L HL+ L ++ N +R + SL L++ N+LT ++ + +L+
Sbjct: 49 VIRTDTFKHLRHLEILQLSKNLVRKIEVGAFNGLPSLNTLELFDNRLT-TVPTQAFEYLS 107
Query: 69 SIEELMLSNNYFQIPISLEPLFNYSRL 95
+ EL L NN PI P + ++R+
Sbjct: 108 KLRELWLRNN----PIESIPSYAFNRV 130
>pdb|2O6Q|A Chain A, Structural Diversity Of The Hagfish Variable Lymphocyte
Receptors A29
Length = 270
Score = 38.9 bits (89), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 57/223 (25%), Positives = 87/223 (39%), Gaps = 9/223 (4%)
Query: 225 NNSMNALDGSIPSSFGNMKFLQILDLSNNHLTGEIPEHLAVGCVNLQFLALSNNNLQGHL 284
N ++ DG + S N +D S+ LT IP ++ L + ++L
Sbjct: 1 NEALCKKDGGVCSCNNNK---NSVDCSSKKLTA-IPSNIPADTKKLDLQSNKLSSLPSKA 56
Query: 285 FSRNFNLTNLQWLQLEGNRFVGEIPQSLSKCSSLEGLYLNNNSLLGKIPRWLGNLTRLQY 344
F R LT L+ L L N+ + +LE L++ +N L L L
Sbjct: 57 FHR---LTKLRLLYLNDNKLQTLPAGIFKELKNLETLWVTDNKLQALPIGVFDQLVNLAE 113
Query: 345 IIMPNNHLEGPIPVEFCQLDSLQILDISDNNISGSLPSCFHPL-SIKQVHLSKNMLHGQL 403
+ + N L+ P F L L L + N + F L S+K++ L N L ++
Sbjct: 114 LRLDRNQLKSLPPRVFDSLTKLTYLSLGYNELQSLPKGVFDKLTSLKELRLYNNQLK-RV 172
Query: 404 KRGTFFNCSSLVTLDLSYNRLNGSIPDWVDGLSQLSHLILGHN 446
G F + L TL L N+L D L +L L L N
Sbjct: 173 PEGAFDKLTELKTLKLDNNQLKRVPEGAFDSLEKLKMLQLQEN 215
Score = 38.5 bits (88), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 45/155 (29%), Positives = 70/155 (45%), Gaps = 4/155 (2%)
Query: 297 LQLEGNRFVGEIPQSLSKCSSLEGLYLNNNSLLGKIPRWLGNLTRLQYIIMPNNHLEG-P 355
L L+ N+ ++ + + L LYLN+N L L L+ + + +N L+ P
Sbjct: 42 LDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWVTDNKLQALP 101
Query: 356 IPVEFCQLDSLQILDISDNNISGSLPSCFHPLS-IKQVHLSKNMLHGQLKRGTFFNCSSL 414
I V F QL +L L + N + P F L+ + + L N L L +G F +SL
Sbjct: 102 IGV-FDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNELQS-LPKGVFDKLTSL 159
Query: 415 VTLDLSYNRLNGSIPDWVDGLSQLSHLILGHNNLE 449
L L N+L D L++L L L +N L+
Sbjct: 160 KELRLYNNQLKRVPEGAFDKLTELKTLKLDNNQLK 194
Score = 33.9 bits (76), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 31/94 (32%), Positives = 50/94 (53%), Gaps = 11/94 (11%)
Query: 539 LSGLDLSCNKLIGHIPPQI-GNLTRIQTLNLSHNNLTGSIPSTFSNLKHVESLDLSNNKL 597
L+ L L N+L +PP++ +LT++ L+L +N L F L ++ L L NN+L
Sbjct: 111 LAELRLDRNQL-KSLPPRVFDSLTKLTYLSLGYNELQSLPKGVFDKLTSLKELRLYNNQL 169
Query: 598 NGKIPH----QLVELKTLEVFSVAYNNLSGEIPE 627
++P +L ELKTL++ NN +PE
Sbjct: 170 K-RVPEGAFDKLTELKTLKL----DNNQLKRVPE 198
Score = 30.0 bits (66), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 26/76 (34%), Positives = 38/76 (50%), Gaps = 5/76 (6%)
Query: 542 LDLSCNKLIGHIPPQIGNLTRIQTLNLSHNNLTGSIPSTFSNLKHVESLDLSNNKLNGKI 601
LDL NKL LT+++ L L+ N L F LK++E+L +++NKL +
Sbjct: 42 LDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWVTDNKLQA-L 100
Query: 602 P----HQLVELKTLEV 613
P QLV L L +
Sbjct: 101 PIGVFDQLVNLAELRL 116
>pdb|3ZYO|A Chain A, Crystal Structure Of The N-Terminal Leucine Rich Repeats
And Immunoglobulin Domain Of Netrin-G Ligand-3
Length = 411
Score = 38.5 bits (88), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 67/267 (25%), Positives = 107/267 (40%), Gaps = 64/267 (23%)
Query: 213 KIGDVLPSLYVFNNSMNALDGSI----PSSFGNMKFLQILDLSNNHLTGEIPEHLAVGCV 268
++ +V S+ V +N + SI +F +++ L+IL LS N + + VG
Sbjct: 25 ELAEVPASIPVNTRYLNLQENSIQVIRTDTFKHLRHLEILQLSKN-----LVRKIEVGAF 79
Query: 269 NLQFLALSNNNLQGHLFSRNFNLTNLQWLQLEGNRFVGEIPQSLSKCSSLEGLYLNNNSL 328
N L +L L+L NR Q+ S L L+L NN +
Sbjct: 80 N--------------------GLPSLNTLELFDNRLTTVPTQAFEYLSKLRELWLRNNPI 119
Query: 329 -------LGKIPRW----LGNLTRLQYIIMPNNHLEGPIPVEF-----CQLDS------- 365
++P LG L RL+YI EG + + + C L
Sbjct: 120 ESIPSYAFNRVPSLRRLDLGELKRLEYI--SEAAFEGLVNLRYLNLGMCNLKDIPNLTAL 177
Query: 366 --LQILDISDNNISGSLPSCFHPL-SIKQVHLSKNMLHGQ---LKRGTFFNCSSLVTLDL 419
L+ L++S N + P F L S++++ L +H Q ++R F + SL L+L
Sbjct: 178 VRLEELELSGNRLDLIRPGSFQGLTSLRKLWL----MHAQVATIERNAFDDLKSLEELNL 233
Query: 420 SYNRLNGSIPDWVDGLSQLSHLILGHN 446
S+N L D L +L + L HN
Sbjct: 234 SHNNLMSLPHDLFTPLHRLERVHLNHN 260
Score = 32.3 bits (72), Expect = 0.83, Method: Compositional matrix adjust.
Identities = 30/85 (35%), Positives = 43/85 (50%), Gaps = 3/85 (3%)
Query: 15 LCSLVHLQELYIASNDLRGSLPWCMANMTSLRILDVSSNQLTGSISSSPLVHLTSIEELM 74
L +LV L+EL ++ N L P +TSLR L + Q+ +I + L S+EEL
Sbjct: 174 LTALVRLEELELSGNRLDLIRPGSFQGLTSLRKLWLMHAQV-ATIERNAFDDLKSLEELN 232
Query: 75 LS-NNYFQIPISL-EPLFNYSRLKI 97
LS NN +P L PL R+ +
Sbjct: 233 LSHNNLMSLPHDLFTPLHRLERVHL 257
Score = 32.3 bits (72), Expect = 0.93, Method: Compositional matrix adjust.
Identities = 61/240 (25%), Positives = 96/240 (40%), Gaps = 33/240 (13%)
Query: 367 QILDISDNNISGSLPSCF-HPLSIKQVHLSKNMLHGQLKRGTFFNCSSLVTLDLSYNRLN 425
+ L++ +N+I F H ++ + LSKN++ +++ G F SL TL+L NRL
Sbjct: 38 RYLNLQENSIQVIRTDTFKHLRHLEILQLSKNLVR-KIEVGAFNGLPSLNTLELFDNRLT 96
Query: 426 GSIPDWVDGLSQLSHLILGHNNLEGEVSVXXXXXXXXXXXXXXXXXXHGPIPPCFDNTTL 485
+ LS+L L L +N +E S P L
Sbjct: 97 TVPTQAFEYLSKLRELWLRNNPIESIPSYAFNRV------------------PSLRRLDL 138
Query: 486 HESYSNSSSPDEQFEIFFSIEGHQGFLEKQNHEIFEFTTKNIAYIYQGKVLSLLSGLDLS 545
E ++ E + S +G + N N+ I L L L+LS
Sbjct: 139 GEL--------KRLE-YISEAAFEGLV---NLRYLNLGMCNLKDIPNLTALVRLEELELS 186
Query: 546 CNKLIGHIPPQIGNLTRIQTLNLSHNNLTGSIPSTFSNLKHVESLDLSNNKLNGKIPHQL 605
N+L P LT ++ L L H + + F +LK +E L+LS+N L +PH L
Sbjct: 187 GNRLDLIRPGSFQGLTSLRKLWLMHAQVATIERNAFDDLKSLEELNLSHNNLMS-LPHDL 245
Score = 30.4 bits (67), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 24/87 (27%), Positives = 44/87 (50%), Gaps = 5/87 (5%)
Query: 9 VVRSQGLCSLVHLQELYIASNDLRGSLPWCMANMTSLRILDVSSNQLTGSISSSPLVHLT 68
V+R+ L HL+ L ++ N +R + SL L++ N+LT ++ + +L+
Sbjct: 49 VIRTDTFKHLRHLEILQLSKNLVRKIEVGAFNGLPSLNTLELFDNRLT-TVPTQAFEYLS 107
Query: 69 SIEELMLSNNYFQIPISLEPLFNYSRL 95
+ EL L NN PI P + ++R+
Sbjct: 108 KLRELWLRNN----PIESIPSYAFNRV 130
Score = 30.0 bits (66), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 20/67 (29%), Positives = 35/67 (52%)
Query: 555 PQIGNLTRIQTLNLSHNNLTGSIPSTFSNLKHVESLDLSNNKLNGKIPHQLVELKTLEVF 614
P + L R++ L LS N L P +F L + L L + ++ + +LK+LE
Sbjct: 172 PNLTALVRLEELELSGNRLDLIRPGSFQGLTSLRKLWLMHAQVATIERNAFDDLKSLEEL 231
Query: 615 SVAYNNL 621
++++NNL
Sbjct: 232 NLSHNNL 238
>pdb|3M18|A Chain A, Crystal Structure Of Variable Lymphocyte Receptor
Vlra.R2.1 In Complex With Hen Egg Lysozyme
Length = 251
Score = 38.1 bits (87), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 48/155 (30%), Positives = 62/155 (40%), Gaps = 35/155 (22%)
Query: 170 TKLETLFLVNDSLAGPFRLPIHSHKRLRQLDVSNNNIRGHIPVKIGDVLPSLYVFNNSMN 229
T+L TL L N+ LA LP+ L QLD LY+ N +
Sbjct: 83 TELGTLGLANNQLA---SLPLGVFDHLTQLD-------------------KLYLGGNQLK 120
Query: 230 ALDGSIPSSFGNMKFLQILDLSNNHLTGEIPEHLAVGCVNLQFLALSNNNLQGHLFSRNF 289
+L + F + L+ L L+ N L IP NLQ L+LS N LQ
Sbjct: 121 SLPSGV---FDRLTKLKELRLNTNQLQ-SIPAGAFDKLTNLQTLSLSTNQLQSVPHGAFD 176
Query: 290 NLTNLQWLQLEGNRFVGEIPQSLSKCSSLEGLYLN 324
L LQ + L GN+F CS E LYL+
Sbjct: 177 RLGKLQTITLFGNQF---------DCSRCETLYLS 202
Score = 32.7 bits (73), Expect = 0.78, Method: Compositional matrix adjust.
Identities = 21/64 (32%), Positives = 33/64 (51%), Gaps = 1/64 (1%)
Query: 18 LVHLQELYIASNDLRGSLPWCMANMTSLRILDVSSNQLTGSISSSPLVHLTSIEELMLSN 77
L L +LY+ N L+ +T L+ L +++NQL SI + LT+++ L LS
Sbjct: 106 LTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQ-SIPAGAFDKLTNLQTLSLST 164
Query: 78 NYFQ 81
N Q
Sbjct: 165 NQLQ 168
Score = 30.0 bits (66), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 49/195 (25%), Positives = 76/195 (38%), Gaps = 18/195 (9%)
Query: 227 SMNALDGSIPSSFGNMKFLQILDLSNNHLTGEIPEHLAVGCVNLQFLALSNNNLQGHLFS 286
S++++ IP+ + LDL + L + + G L +L L N LQ
Sbjct: 25 SLDSVPSGIPAD------TEKLDLQSTGL-ATLSDATFRGLTKLTWLNLDYNQLQTLSAG 77
Query: 287 RNFNLTNLQWLQLEGNRFVGEIPQSLSKCSSLEGLYLNNNSLLGKIPRWLGNLTRLQYII 346
+LT L L L N+ + L+ LYL N L LT+L+ +
Sbjct: 78 VFDDLTELGTLGLANNQLASLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELR 137
Query: 347 MPNNHLEGPIPVEFCQLDSLQILDISDNNISGSLPSCFHPL-SIKQVHLSKNMLHGQLKR 405
+ N L+ F +L +LQ L +S N + F L ++ + L N
Sbjct: 138 LNTNQLQSIPAGAFDKLTNLQTLSLSTNQLQSVPHGAFDRLGKLQTITLFGNQ------- 190
Query: 406 GTFFNCSSLVTLDLS 420
F+CS TL LS
Sbjct: 191 ---FDCSRCETLYLS 202
Score = 30.0 bits (66), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 22/65 (33%), Positives = 40/65 (61%), Gaps = 7/65 (10%)
Query: 560 LTRIQTLNLSHNNLTGSIPS-TFSNLKHVESLDLSNNKLNGKIPH----QLVELKTLEVF 614
LT+++ L L+ N L SIP+ F L ++++L LS N+L +PH +L +L+T+ +F
Sbjct: 130 LTKLKELRLNTNQLQ-SIPAGAFDKLTNLQTLSLSTNQLQ-SVPHGAFDRLGKLQTITLF 187
Query: 615 SVAYN 619
++
Sbjct: 188 GNQFD 192
Score = 29.6 bits (65), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 39/116 (33%), Positives = 58/116 (50%), Gaps = 8/116 (6%)
Query: 338 NLTRLQYIIMPNNHLEG-PIPVEFCQLDSLQILDISDNNISGSLPS-CFHPLS-IKQVHL 394
+LT L + + NN L P+ V F L L L + N + SLPS F L+ +K++ L
Sbjct: 81 DLTELGTLGLANNQLASLPLGV-FDHLTQLDKLYLGGNQLK-SLPSGVFDRLTKLKELRL 138
Query: 395 SKNMLHGQLKRGTFFNCSSLVTLDLSYNRLNGSIPDWV-DGLSQLSHLILGHNNLE 449
+ N L + G F ++L TL LS N+L S+P D L +L + L N +
Sbjct: 139 NTNQLQ-SIPAGAFDKLTNLQTLSLSTNQLQ-SVPHGAFDRLGKLQTITLFGNQFD 192
>pdb|4FHO|A Chain A, Crystal Structure Of An Internalin C2 (Inlc2) From
Listeria Monocytogenes Str. 4b F2365 At 1.90 A
Resolution
pdb|4FHO|B Chain B, Crystal Structure Of An Internalin C2 (Inlc2) From
Listeria Monocytogenes Str. 4b F2365 At 1.90 A
Resolution
Length = 231
Score = 37.7 bits (86), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 51/184 (27%), Positives = 78/184 (42%), Gaps = 17/184 (9%)
Query: 216 DVLPSLYVFNNSMNALDGSIPSSFGNMKFLQILDLSNNHLTGEIPEHLAVGCVNLQFLAL 275
D + +L FN + ++G + L L+L +N +T P + L L
Sbjct: 47 DGIATLSAFNTGVTTIEG-----IQYLNNLIGLELKDNQITDLTPLK---NLTKITELEL 98
Query: 276 SNNNLQGHLFSRNFNLTNLQWLQLEGNRFVGEIPQSLSKCSSLEGLYLNNNSLLGKIPRW 335
S N L+ S L +++ L L + P L+ S+L+ LYL+ N + P
Sbjct: 99 SGNPLKN--VSAIAGLQSIKTLDLTSTQITDVTP--LAGLSNLQVLYLDLNQITNISP-- 152
Query: 336 LGNLTRLQYIIMPNNHLEGPIPVEFCQLDSLQILDISDNNISGSLPSCFHPLSIKQVHLS 395
L LT LQY+ + NN + P L L L DN IS P P ++ +VHL
Sbjct: 153 LAGLTNLQYLSIGNNQVNDLTP--LANLSKLTTLRADDNKISDISPLASLP-NLIEVHLK 209
Query: 396 KNML 399
N +
Sbjct: 210 DNQI 213
Score = 36.2 bits (82), Expect = 0.058, Method: Compositional matrix adjust.
Identities = 31/110 (28%), Positives = 53/110 (48%), Gaps = 24/110 (21%)
Query: 15 LCSLVHLQELYIASNDLRGSLPWCMANMTSLRILDVSSNQLT-----GSISS-------- 61
L +L + EL ++ N L+ +A + S++ LD++S Q+T +S+
Sbjct: 87 LKNLTKITELELSGNPLKNV--SAIAGLQSIKTLDLTSTQITDVTPLAGLSNLQVLYLDL 144
Query: 62 ------SPLVHLTSIEELMLSNNYFQIPISLEPLFNYSRLKIFNAENNEI 105
SPL LT+++ L + NN L PL N S+L A++N+I
Sbjct: 145 NQITNISPLAGLTNLQYLSIGNNQVN---DLTPLANLSKLTTLRADDNKI 191
>pdb|2A0Z|A Chain A, The Molecular Structure Of Toll-like Receptor 3 Ligand
Binding Domain
Length = 705
Score = 37.7 bits (86), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 90/307 (29%), Positives = 128/307 (41%), Gaps = 33/307 (10%)
Query: 148 EYVDLSHIKMNGEFPNWLLENNTKLETLFLVNDSLAGPFRLPIHSHKRLRQL---DVSNN 204
E D SH+K+ + P+ L N T L L ++ L RLP + R QL DV N
Sbjct: 12 EVADCSHLKLT-QVPDDLPTNITVLN---LTHNQLR---RLPAANFTRYSQLTSLDVGFN 64
Query: 205 NIRGHIPVKIGDVLPSLYVFNNSMNALDGSIPSSFGNMKFLQILDLSNNHLTGEIPEHLA 264
I P ++ LP L V N N L +F L L L +N + +I +
Sbjct: 65 TISKLEP-ELCQKLPMLKVLNLQHNELSQLSDKTFAFCTNLTELHLMSNSIQ-KIKNNPF 122
Query: 265 VGCVNLQFLALSNNNLQGHLFSRNFNLTNLQWLQLEGNRFVGEIPQSLS--KCSSLEGLY 322
V NL L LS+N L L NLQ L L N+ + L SSL+ L
Sbjct: 123 VKQKNLITLDLSHNGLSSTKLGTQVQLENLQELLLSNNKIQALKSEELDIFANSSLKKLE 182
Query: 323 LNNNSLLGKIPRWLGNLTRLQYIIMPNNHLEGPIPVEFCQLDSLQILDISDNNISGSLPS 382
L++N + P + RL + + N L + + C L++ + S N+S
Sbjct: 183 LSSNQIKEFSPGCFHAIGRLFGLFLNNVQLGPSLTEKLC----LELANTSIRNLS----- 233
Query: 383 CFHPLSIKQVHLSKNMLHGQLKRGTFFNCSSLVTLDLSYNRLNGSIPDWVDGLSQLSHLI 442
LS Q+ + N LK ++L LDLSYN LN D L QL +
Sbjct: 234 ----LSNSQLSTTSNTTFLGLK------WTNLTMLDLSYNNLNVVGNDSFAWLPQLEYFF 283
Query: 443 LGHNNLE 449
L +NN++
Sbjct: 284 LEYNNIQ 290
Score = 32.0 bits (71), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 20/62 (32%), Positives = 32/62 (51%)
Query: 561 TRIQTLNLSHNNLTGSIPSTFSNLKHVESLDLSNNKLNGKIPHQLVELKTLEVFSVAYNN 620
T I LNL+HN L + F+ + SLD+ N ++ P +L L+V ++ +N
Sbjct: 30 TNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNE 89
Query: 621 LS 622
LS
Sbjct: 90 LS 91
Score = 30.0 bits (66), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 24/87 (27%), Positives = 40/87 (45%)
Query: 537 SLLSGLDLSCNKLIGHIPPQIGNLTRIQTLNLSHNNLTGSIPSTFSNLKHVESLDLSNNK 596
S L+ LD+ N + P L ++ LNL HN L+ TF+ ++ L L +N
Sbjct: 54 SQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNELSQLSDKTFAFCTNLTELHLMSNS 113
Query: 597 LNGKIPHQLVELKTLEVFSVAYNNLSG 623
+ + V+ K L +++N LS
Sbjct: 114 IQKIKNNPFVKQKNLITLDLSHNGLSS 140
Score = 29.6 bits (65), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 62/230 (26%), Positives = 94/230 (40%), Gaps = 56/230 (24%)
Query: 238 SFGNMKFLQILDLSNNHLTGEIPEHLAVGCVNLQFLALSNNNLQGHLFSRNFNLTN---- 293
SF +K L+ L++ +N + G I ++ G +NL++L+LSN+ F+ LTN
Sbjct: 329 SFQWLKCLEHLNMEDNDIPG-IKSNMFTGLINLKYLSLSNS------FTSLRTLTNETFV 381
Query: 294 ------LQWLQLEGNRFVGEIPQSLSKCSSLEGLYLNNNS----LLGKIPRWLGNLTRL- 342
L L L N+ + S LE L L N L G+ R L N+ +
Sbjct: 382 SLAHSPLHILNLTKNKISKIESDAFSWLGHLEVLDLGLNEIGQELTGQEWRGLENIFEIY 441
Query: 343 ----QYIIMPNNHLEGPIPVEFCQLDSLQILDISDNNISGSLPSCFHPLSIKQVHLSKNM 398
+Y+ + N +P L L + ++ N+ S PS F PL
Sbjct: 442 LSYNKYLQLTRNSF-ALVP----SLQRLMLRRVALKNVDSS-PSPFQPLR---------- 485
Query: 399 LHGQLKRGTFFNCSSLVTLDLSYNRLNGSIPDWVDGLSQLSHLILGHNNL 448
+L LDLS N + D ++GL +L L L HNNL
Sbjct: 486 --------------NLTILDLSNNNIANINDDMLEGLEKLEILDLQHNNL 521
Score = 29.6 bits (65), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 24/63 (38%), Positives = 35/63 (55%), Gaps = 2/63 (3%)
Query: 561 TRIQTLNLSHNNLTGSIPSTFSNLK--HVESLDLSNNKLNGKIPHQLVELKTLEVFSVAY 618
T I+ L+LS++ L+ + +TF LK ++ LDLS N LN L LE F + Y
Sbjct: 227 TSIRNLSLSNSQLSTTSNTTFLGLKWTNLTMLDLSYNNLNVVGNDSFAWLPQLEYFFLEY 286
Query: 619 NNL 621
NN+
Sbjct: 287 NNI 289
>pdb|3ULU|A Chain A, Structure Of Quaternary Complex Of Human Tlr3ecd With
Three Fabs (Form1)
pdb|3ULV|A Chain A, Structure Of Quaternary Complex Of Human Tlr3ecd With
Three Fabs (Form2)
Length = 694
Score = 37.4 bits (85), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 90/307 (29%), Positives = 128/307 (41%), Gaps = 33/307 (10%)
Query: 148 EYVDLSHIKMNGEFPNWLLENNTKLETLFLVNDSLAGPFRLPIHSHKRLRQL---DVSNN 204
E D SH+K+ + P+ L N T L L ++ L RLP + R QL DV N
Sbjct: 17 EVADCSHLKLT-QVPDDLPTNITVLN---LTHNQLR---RLPAANFTRYSQLTSLDVGFN 69
Query: 205 NIRGHIPVKIGDVLPSLYVFNNSMNALDGSIPSSFGNMKFLQILDLSNNHLTGEIPEHLA 264
I P ++ LP L V N N L +F L L L +N + +I +
Sbjct: 70 TISKLEP-ELCQKLPMLKVLNLQHNELSQLSDKTFAFCTNLTELHLMSNSIQ-KIKNNPF 127
Query: 265 VGCVNLQFLALSNNNLQGHLFSRNFNLTNLQWLQLEGNRFVGEIPQSLS--KCSSLEGLY 322
V NL L LS+N L L NLQ L L N+ + L SSL+ L
Sbjct: 128 VKQKNLITLDLSHNGLSSTKLGTQVQLENLQELLLSNNKIQALKSEELDIFANSSLKKLE 187
Query: 323 LNNNSLLGKIPRWLGNLTRLQYIIMPNNHLEGPIPVEFCQLDSLQILDISDNNISGSLPS 382
L++N + P + RL + + N L + + C L++ + S N+S
Sbjct: 188 LSSNQIKEFSPGCFHAIGRLFGLFLNNVQLGPSLTEKLC----LELANTSIRNLS----- 238
Query: 383 CFHPLSIKQVHLSKNMLHGQLKRGTFFNCSSLVTLDLSYNRLNGSIPDWVDGLSQLSHLI 442
LS Q+ + N LK ++L LDLSYN LN D L QL +
Sbjct: 239 ----LSNSQLSTTSNTTFLGLK------WTNLTMLDLSYNNLNVVGNDSFAWLPQLEYFF 288
Query: 443 LGHNNLE 449
L +NN++
Sbjct: 289 LEYNNIQ 295
Score = 32.0 bits (71), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 20/62 (32%), Positives = 32/62 (51%)
Query: 561 TRIQTLNLSHNNLTGSIPSTFSNLKHVESLDLSNNKLNGKIPHQLVELKTLEVFSVAYNN 620
T I LNL+HN L + F+ + SLD+ N ++ P +L L+V ++ +N
Sbjct: 35 TNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNE 94
Query: 621 LS 622
LS
Sbjct: 95 LS 96
Score = 30.0 bits (66), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 24/87 (27%), Positives = 40/87 (45%)
Query: 537 SLLSGLDLSCNKLIGHIPPQIGNLTRIQTLNLSHNNLTGSIPSTFSNLKHVESLDLSNNK 596
S L+ LD+ N + P L ++ LNL HN L+ TF+ ++ L L +N
Sbjct: 59 SQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNELSQLSDKTFAFCTNLTELHLMSNS 118
Query: 597 LNGKIPHQLVELKTLEVFSVAYNNLSG 623
+ + V+ K L +++N LS
Sbjct: 119 IQKIKNNPFVKQKNLITLDLSHNGLSS 145
Score = 29.6 bits (65), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 24/63 (38%), Positives = 35/63 (55%), Gaps = 2/63 (3%)
Query: 561 TRIQTLNLSHNNLTGSIPSTFSNLK--HVESLDLSNNKLNGKIPHQLVELKTLEVFSVAY 618
T I+ L+LS++ L+ + +TF LK ++ LDLS N LN L LE F + Y
Sbjct: 232 TSIRNLSLSNSQLSTTSNTTFLGLKWTNLTMLDLSYNNLNVVGNDSFAWLPQLEYFFLEY 291
Query: 619 NNL 621
NN+
Sbjct: 292 NNI 294
Score = 29.6 bits (65), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 62/230 (26%), Positives = 94/230 (40%), Gaps = 56/230 (24%)
Query: 238 SFGNMKFLQILDLSNNHLTGEIPEHLAVGCVNLQFLALSNNNLQGHLFSRNFNLTN---- 293
SF +K L+ L++ +N + G I ++ G +NL++L+LSN+ F+ LTN
Sbjct: 334 SFQWLKCLEHLNMEDNDIPG-IKSNMFTGLINLKYLSLSNS------FTSLRTLTNETFV 386
Query: 294 ------LQWLQLEGNRFVGEIPQSLSKCSSLEGLYLNNNS----LLGKIPRWLGNLTRL- 342
L L L N+ + S LE L L N L G+ R L N+ +
Sbjct: 387 SLAHSPLHILNLTKNKISKIESDAFSWLGHLEVLDLGLNEIGQELTGQEWRGLENIFEIY 446
Query: 343 ----QYIIMPNNHLEGPIPVEFCQLDSLQILDISDNNISGSLPSCFHPLSIKQVHLSKNM 398
+Y+ + N +P L L + ++ N+ S PS F PL
Sbjct: 447 LSYNKYLQLTRNSF-ALVP----SLQRLMLRRVALKNVDSS-PSPFQPLR---------- 490
Query: 399 LHGQLKRGTFFNCSSLVTLDLSYNRLNGSIPDWVDGLSQLSHLILGHNNL 448
+L LDLS N + D ++GL +L L L HNNL
Sbjct: 491 --------------NLTILDLSNNNIANINDDMLEGLEKLEILDLQHNNL 526
>pdb|3B2D|A Chain A, Crystal Structure Of Human Rp105MD-1 Complex
pdb|3B2D|B Chain B, Crystal Structure Of Human Rp105MD-1 Complex
Length = 603
Score = 37.4 bits (85), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 80/298 (26%), Positives = 130/298 (43%), Gaps = 51/298 (17%)
Query: 195 RLRQLDVSNNNIRGHIP--VKIGDVLPSLYVFNNSMNALDGSIPSSFGNMKFLQILDLSN 252
+L++LD++ +++G +P +K ++L L + S+N D S N L L
Sbjct: 276 QLQELDLTATHLKG-LPSGMKGLNLLKKLVL---SVNHFDQLCQISAANFPSLTHL---- 327
Query: 253 NHLTGEIPE-HLAVGCV----NLQFLALSNNNLQGHLFS--RNFNLTNLQWLQLEGNRFV 305
++ G + + HL VGC+ NLQ L LS+N+++ + NL++LQ L L N +
Sbjct: 328 -YIRGNVKKLHLGVGCLEKLGNLQTLDLSHNDIEASDCCSLQLKNLSHLQTLNLSHNEPL 386
Query: 306 GEIPQSLSKCSSLEGLYLNNNSLLGKIPRW-LGNLTRLQ-------YIIMPNNHLEGPIP 357
G Q+ +C LE L L L P+ NL LQ ++ N HL +P
Sbjct: 387 GLQSQAFKECPQLELLDLAFTRLHINAPQSPFQNLHFLQVLNLTYCFLDTSNQHLLAGLP 446
Query: 358 VE--------------------FCQLDSLQILDISDNNISGSLPSCFHPLSIKQVHLSKN 397
V + SL++L +S + FH L K H+ +
Sbjct: 447 VLRHLNLKGNHFQDGTITKTNLLQTVGSLEVLILSSCGLLSIDQQAFHSLG-KMSHV--D 503
Query: 398 MLHGQLKRGTFFNCSSL--VTLDLSYNRLNGSIPDWVDGLSQLSHLILGHNNLEGEVS 453
+ H L + + S L + L+L+ N +N P + LSQ S + L HN L+ S
Sbjct: 504 LSHNSLTCDSIDSLSHLKGIYLNLAANSINIISPRLLPILSQQSTINLSHNPLDCTCS 561
Score = 37.0 bits (84), Expect = 0.043, Method: Compositional matrix adjust.
Identities = 35/113 (30%), Positives = 49/113 (43%), Gaps = 3/113 (2%)
Query: 539 LSGLDLSCNKLIGH--IPPQIGNLTRIQTLNLSHNNLTGSIPSTFSNLKHVESLDLSNNK 596
L LDLS N + Q+ NL+ +QTLNLSHN G F +E LDL+ +
Sbjct: 349 LQTLDLSHNDIEASDCCSLQLKNLSHLQTLNLSHNEPLGLQSQAFKECPQLELLDLAFTR 408
Query: 597 LNGKIPHQLVE-LKTLEVFSVAYNNLSGEIPEWKAQFATFNESSYEGNTFLCG 648
L+ P + L L+V ++ Y L A + +GN F G
Sbjct: 409 LHINAPQSPFQNLHFLQVLNLTYCFLDTSNQHLLAGLPVLRHLNLKGNHFQDG 461
Score = 30.0 bits (66), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 53/188 (28%), Positives = 82/188 (43%), Gaps = 9/188 (4%)
Query: 268 VNLQFLALSNNNLQGHLFSRNFNLTNLQWLQLEGNRFVGEIPQSLSKCSSLEGLYLNNNS 327
LQ L L+ +L+G L S L L+ L L N F S + SL LY+ N
Sbjct: 275 TQLQELDLTATHLKG-LPSGMKGLNLLKKLVLSVNHFDQLCQISAANFPSLTHLYIRGN- 332
Query: 328 LLGKIPRWLGNLTRL---QYIIMPNNHLEGP--IPVEFCQLDSLQILDISDNNISGSLPS 382
+ K+ +G L +L Q + + +N +E ++ L LQ L++S N G
Sbjct: 333 -VKKLHLGVGCLEKLGNLQTLDLSHNDIEASDCCSLQLKNLSHLQTLNLSHNEPLGLQSQ 391
Query: 383 CFHPL-SIKQVHLSKNMLHGQLKRGTFFNCSSLVTLDLSYNRLNGSIPDWVDGLSQLSHL 441
F ++ + L+ LH + F N L L+L+Y L+ S + GL L HL
Sbjct: 392 AFKECPQLELLDLAFTRLHINAPQSPFQNLHFLQVLNLTYCFLDTSNQHLLAGLPVLRHL 451
Query: 442 ILGHNNLE 449
L N+ +
Sbjct: 452 NLKGNHFQ 459
>pdb|3V47|A Chain A, Crystal Structure Of The N-Tetminal Fragment Of Zebrafish
Tlr5 In Complex With Salmonella Flagellin
pdb|3V47|B Chain B, Crystal Structure Of The N-Tetminal Fragment Of Zebrafish
Tlr5 In Complex With Salmonella Flagellin
Length = 455
Score = 37.4 bits (85), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 27/96 (28%), Positives = 48/96 (50%), Gaps = 2/96 (2%)
Query: 529 YIYQGKVLSLLSGLDLSCNKLIGHIPPQIGNLTRIQTLNLSHNNLTGSIPSTFSNLKHVE 588
+ ++G S + DLS +K+ + + T ++ L L+ N + + F L H+
Sbjct: 267 FTFKGLEASGVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNEINKIDDNAFWGLTHLL 326
Query: 589 SLDLSNNKLNGKIPHQLVE-LKTLEVFSVAYNNLSG 623
L+LS N L G I ++ E L LEV ++YN++
Sbjct: 327 KLNLSQNFL-GSIDSRMFENLDKLEVLDLSYNHIRA 361
Score = 34.7 bits (78), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 44/123 (35%), Positives = 60/123 (48%), Gaps = 18/123 (14%)
Query: 196 LRQLDVSNNNIRGHIPVKIGD----VLPSLYVFNNSMNALDGSIPSS-FGNMKFLQILDL 250
L QL ++ N I KI D L L N S N L GSI S F N+ L++LDL
Sbjct: 301 LEQLTLAQNEIN-----KIDDNAFWGLTHLLKLNLSQNFL-GSIDSRMFENLDKLEVLDL 354
Query: 251 SNNHLTGEIPEHLAVGCVNLQFLALSNNNLQG---HLFSRNFNLTNLQWLQLEGNRFVGE 307
S NH+ + + +G NL+ LAL N L+ +F R LT+LQ + L N +
Sbjct: 355 SYNHIRA-LGDQSFLGLPNLKELALDTNQLKSVPDGIFDR---LTSLQKIWLHTNPWDCS 410
Query: 308 IPQ 310
P+
Sbjct: 411 CPR 413
Score = 31.6 bits (70), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 54/208 (25%), Positives = 82/208 (39%), Gaps = 17/208 (8%)
Query: 245 LQILDLSNNHLTGEIPEHL--AVGCVNLQFLALSNNNLQGHLFSR-------NFNLTNLQ 295
+ LDLS N + + A+ +Q L LSN+ G F NF L+
Sbjct: 214 ITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILSNSYNMGSSFGHTNFKDPDNFTFKGLE 273
Query: 296 W-----LQLEGNRFVGEIPQSLSKCSSLEGLYLNNNSLLGKIPRWLGNLTRLQYIIMPNN 350
L ++ + S + LE L L N + LT L + + N
Sbjct: 274 ASGVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNEINKIDDNAFWGLTHLLKLNLSQN 333
Query: 351 HLEGPIPVEFCQLDSLQILDISDNNISGSLPSCFHPL-SIKQVHLSKNMLHGQLKRGTFF 409
L F LD L++LD+S N+I F L ++K++ L N L + G F
Sbjct: 334 FLGSIDSRMFENLDKLEVLDLSYNHIRALGDQSFLGLPNLKELALDTNQLKS-VPDGIFD 392
Query: 410 NCSSLVTLDLSYNRLNGSIPDWVDGLSQ 437
+SL + L N + S P +D LS+
Sbjct: 393 RLTSLQKIWLHTNPWDCSCPR-IDYLSR 419
Score = 30.0 bits (66), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 28/91 (30%), Positives = 42/91 (46%), Gaps = 2/91 (2%)
Query: 360 FCQLDSLQILDISDNNISGSLPSCFHPLS-IKQVHLSKNMLHGQLKRGTFFNCSSLVTLD 418
F L+ L ++ N I+ + F L+ + +++LS+N L G + F N L LD
Sbjct: 295 FSHFTDLEQLTLAQNEINKIDDNAFWGLTHLLKLNLSQNFL-GSIDSRMFENLDKLEVLD 353
Query: 419 LSYNRLNGSIPDWVDGLSQLSHLILGHNNLE 449
LSYN + GL L L L N L+
Sbjct: 354 LSYNHIRALGDQSFLGLPNLKELALDTNQLK 384
Score = 29.3 bits (64), Expect = 7.3, Method: Compositional matrix adjust.
Identities = 26/69 (37%), Positives = 35/69 (50%), Gaps = 3/69 (4%)
Query: 560 LTRIQTLNLSHNNLTGSIPST-FSNLKHVESLDLSNNKLNGKIPHQLVELKTLEVFSVAY 618
LT + LNLS N L GSI S F NL +E LDLS N + + L L+ ++
Sbjct: 322 LTHLLKLNLSQNFL-GSIDSRMFENLDKLEVLDLSYNHIRALGDQSFLGLPNLKELALDT 380
Query: 619 NNLSGEIPE 627
N L +P+
Sbjct: 381 NQLK-SVPD 388
Score = 29.3 bits (64), Expect = 8.1, Method: Compositional matrix adjust.
Identities = 30/103 (29%), Positives = 42/103 (40%), Gaps = 14/103 (13%)
Query: 212 VKIGDVLPSLYVFNNSMNALDGSIPSSFGNMKFLQILDLSNNHLTGEIPEHLAVGCVNLQ 271
+K+ P L + NN+ L I +FLQ+ + N G NL+
Sbjct: 59 LKVEQQTPGLVIRNNTFRGLSSLIILKLDYNQFLQLETGAFN------------GLANLE 106
Query: 272 FLALSNNNLQGHLFSRNF--NLTNLQWLQLEGNRFVGEIPQSL 312
L L+ NL G + S NF LT+L+ L L N P S
Sbjct: 107 VLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASF 149
>pdb|3A79|B Chain B, Crystal Structure Of Tlr2-Tlr6-Pam2csk4 Complex
Length = 562
Score = 37.4 bits (85), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 36/96 (37%), Positives = 49/96 (51%), Gaps = 7/96 (7%)
Query: 534 KVLSLLSGLDLSCNKLIGHIPPQIGNLTR-IQTLNLSHNNLTGSIPSTFSNL-KHVESLD 591
K +S L LD+S N L H + I LNLS N LTGS+ F L V+ LD
Sbjct: 400 KNMSSLETLDVSLNSLNSHAYDRTCAWAESILVLNLSSNMLTGSV---FRCLPPKVKVLD 456
Query: 592 LSNNKLNGKIPHQLVELKTLEVFSVAYNNLSGEIPE 627
L NN++ IP + L+ L+ +VA N L +P+
Sbjct: 457 LHNNRIMS-IPKDVTHLQALQELNVASNQLKS-VPD 490
Score = 36.2 bits (82), Expect = 0.073, Method: Compositional matrix adjust.
Identities = 45/166 (27%), Positives = 75/166 (45%), Gaps = 6/166 (3%)
Query: 219 PSLYVF-NNSMNALDGSIPSSFGNMKFLQILDLSNNHLTGEIPEHLAVGCVN-LQFLALS 276
PS + F N + N S+ +K LQ L L N L L ++ L+ L +S
Sbjct: 352 PSSFTFLNFTQNVFTDSVFQGCSTLKRLQTLILQRNGLKNFFKVALMTKNMSSLETLDVS 411
Query: 277 NNNLQGHLFSRNFNLT-NLQWLQLEGNRFVGEIPQSLSKCSSLEGLYLNNNSLLGKIPRW 335
N+L H + R ++ L L N G + + L ++ L L+NN ++ IP+
Sbjct: 412 LNSLNSHAYDRTCAWAESILVLNLSSNMLTGSVFRCLPP--KVKVLDLHNNRIMS-IPKD 468
Query: 336 LGNLTRLQYIIMPNNHLEGPIPVEFCQLDSLQILDISDNNISGSLP 381
+ +L LQ + + +N L+ F +L SLQ + + DN + P
Sbjct: 469 VTHLQALQELNVASNQLKSVPDGVFDRLTSLQYIWLHDNPWDCTCP 514
Score = 30.0 bits (66), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 30/97 (30%), Positives = 41/97 (42%), Gaps = 9/97 (9%)
Query: 13 QGLCSLVHLQELYIASNDLRG--SLPWCMANMTSLRILDVSSNQLTGSISSSPLVHLTSI 70
QG +L LQ L + N L+ + NM+SL LDVS N L SI
Sbjct: 371 QGCSTLKRLQTLILQRNGLKNFFKVALMTKNMSSLETLDVSLNSLNSHAYDRTCAWAESI 430
Query: 71 EELMLSNNYFQIPI--SLEPLFNYSRLKIFNAENNEI 105
L LS+N + L P ++K+ + NN I
Sbjct: 431 LVLNLSSNMLTGSVFRCLPP-----KVKVLDLHNNRI 462
Score = 29.3 bits (64), Expect = 8.5, Method: Compositional matrix adjust.
Identities = 25/80 (31%), Positives = 36/80 (45%), Gaps = 9/80 (11%)
Query: 78 NYFQIPISLEPLFNYSRLKIFNAENNEIKAEITESHSLIAPKFQLNTLSLSSNYGDGFIF 137
N +P L P R K + N I S ++ +L L LS N F
Sbjct: 42 NLTHVPKDLPP-----RTKALSLSQNSISELRMPDISFLS---ELRVLRLSHNRIRSLDF 93
Query: 138 PKFLYHQHDLEYVDLSHIKM 157
FL++Q DLEY+D+SH ++
Sbjct: 94 HVFLFNQ-DLEYLDVSHNRL 112
>pdb|3M19|A Chain A, Crystal Structure Of Variable Lymphocyte Receptor
Vlra.R5.1
pdb|3M19|B Chain B, Crystal Structure Of Variable Lymphocyte Receptor
Vlra.R5.1
Length = 251
Score = 37.0 bits (84), Expect = 0.034, Method: Compositional matrix adjust.
Identities = 48/155 (30%), Positives = 62/155 (40%), Gaps = 35/155 (22%)
Query: 170 TKLETLFLVNDSLAGPFRLPIHSHKRLRQLDVSNNNIRGHIPVKIGDVLPSLYVFNNSMN 229
T+L TL L N+ LA LP+ L QLD LY+ N +
Sbjct: 83 TELGTLGLANNQLA---SLPLGVFDHLTQLD-------------------KLYLGGNQLK 120
Query: 230 ALDGSIPSSFGNMKFLQILDLSNNHLTGEIPEHLAVGCVNLQFLALSNNNLQGHLFSRNF 289
+L + F + L+ L L+ N L IP NLQ L+LS N LQ
Sbjct: 121 SLPSGV---FDRLTKLKELRLNTNQLQ-SIPAGAFDKLTNLQTLSLSTNQLQSVPHGAFD 176
Query: 290 NLTNLQWLQLEGNRFVGEIPQSLSKCSSLEGLYLN 324
L LQ + L GN+F CS E LYL+
Sbjct: 177 RLGKLQTITLFGNQF---------DCSRCEILYLS 202
Score = 32.7 bits (73), Expect = 0.75, Method: Compositional matrix adjust.
Identities = 21/64 (32%), Positives = 33/64 (51%), Gaps = 1/64 (1%)
Query: 18 LVHLQELYIASNDLRGSLPWCMANMTSLRILDVSSNQLTGSISSSPLVHLTSIEELMLSN 77
L L +LY+ N L+ +T L+ L +++NQL SI + LT+++ L LS
Sbjct: 106 LTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQ-SIPAGAFDKLTNLQTLSLST 164
Query: 78 NYFQ 81
N Q
Sbjct: 165 NQLQ 168
Score = 30.8 bits (68), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 24/71 (33%), Positives = 42/71 (59%), Gaps = 7/71 (9%)
Query: 560 LTRIQTLNLSHNNLTGSIPS-TFSNLKHVESLDLSNNKLNGKIPH----QLVELKTLEVF 614
LT+++ L L+ N L SIP+ F L ++++L LS N+L +PH +L +L+T+ +F
Sbjct: 130 LTKLKELRLNTNQLQ-SIPAGAFDKLTNLQTLSLSTNQLQ-SVPHGAFDRLGKLQTITLF 187
Query: 615 SVAYNNLSGEI 625
++ EI
Sbjct: 188 GNQFDCSRCEI 198
Score = 29.6 bits (65), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 39/116 (33%), Positives = 58/116 (50%), Gaps = 8/116 (6%)
Query: 338 NLTRLQYIIMPNNHLEG-PIPVEFCQLDSLQILDISDNNISGSLPS-CFHPLS-IKQVHL 394
+LT L + + NN L P+ V F L L L + N + SLPS F L+ +K++ L
Sbjct: 81 DLTELGTLGLANNQLASLPLGV-FDHLTQLDKLYLGGNQLK-SLPSGVFDRLTKLKELRL 138
Query: 395 SKNMLHGQLKRGTFFNCSSLVTLDLSYNRLNGSIPDWV-DGLSQLSHLILGHNNLE 449
+ N L + G F ++L TL LS N+L S+P D L +L + L N +
Sbjct: 139 NTNQLQ-SIPAGAFDKLTNLQTLSLSTNQLQ-SVPHGAFDRLGKLQTITLFGNQFD 192
Score = 29.6 bits (65), Expect = 6.9, Method: Compositional matrix adjust.
Identities = 40/155 (25%), Positives = 64/155 (41%), Gaps = 8/155 (5%)
Query: 227 SMNALDGSIPSSFGNMKFLQILDLSNNHLTGEIPEHLAVGCVNLQFLALSNNNLQGHLFS 286
S++++ IP+ + LDL + L + + G L +L L N LQ
Sbjct: 25 SLDSVPSGIPAD------TEKLDLQSTGL-ATLSDATFRGLTKLTWLNLDYNQLQTLSAG 77
Query: 287 RNFNLTNLQWLQLEGNRFVGEIPQSLSKCSSLEGLYLNNNSLLGKIPRWLGNLTRLQYII 346
+LT L L L N+ + L+ LYL N L LT+L+ +
Sbjct: 78 VFDDLTELGTLGLANNQLASLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELR 137
Query: 347 MPNNHLEGPIPVEFCQLDSLQILDISDNNISGSLP 381
+ N L+ F +L +LQ L +S N + S+P
Sbjct: 138 LNTNQLQSIPAGAFDKLTNLQTLSLSTNQLQ-SVP 171
>pdb|1ZIW|A Chain A, Human Toll-Like Receptor 3 Extracellular Domain Structure
Length = 680
Score = 37.0 bits (84), Expect = 0.037, Method: Compositional matrix adjust.
Identities = 90/307 (29%), Positives = 128/307 (41%), Gaps = 33/307 (10%)
Query: 148 EYVDLSHIKMNGEFPNWLLENNTKLETLFLVNDSLAGPFRLPIHSHKRLRQL---DVSNN 204
E D SH+K+ + P+ L N T L L ++ L RLP + R QL DV N
Sbjct: 7 EVADCSHLKLT-QVPDDLPTNITVLN---LTHNQLR---RLPAANFTRYSQLTSLDVGFN 59
Query: 205 NIRGHIPVKIGDVLPSLYVFNNSMNALDGSIPSSFGNMKFLQILDLSNNHLTGEIPEHLA 264
I P ++ LP L V N N L +F L L L +N + +I +
Sbjct: 60 TISKLEP-ELCQKLPMLKVLNLQHNELSQLSDKTFAFCTNLTELHLMSNSIQ-KIKNNPF 117
Query: 265 VGCVNLQFLALSNNNLQGHLFSRNFNLTNLQWLQLEGNRFVGEIPQSLS--KCSSLEGLY 322
V NL L LS+N L L NLQ L L N+ + L SSL+ L
Sbjct: 118 VKQKNLITLDLSHNGLSSTKLGTQVQLENLQELLLSNNKIQALKSEELDIFANSSLKKLE 177
Query: 323 LNNNSLLGKIPRWLGNLTRLQYIIMPNNHLEGPIPVEFCQLDSLQILDISDNNISGSLPS 382
L++N + P + RL + + N L + + C L++ + S N+S
Sbjct: 178 LSSNQIKEFSPGCFHAIGRLFGLFLNNVQLGPSLTEKLC----LELANTSIRNLS----- 228
Query: 383 CFHPLSIKQVHLSKNMLHGQLKRGTFFNCSSLVTLDLSYNRLNGSIPDWVDGLSQLSHLI 442
LS Q+ + N LK ++L LDLSYN LN D L QL +
Sbjct: 229 ----LSNSQLSTTSNTTFLGLK------WTNLTMLDLSYNNLNVVGNDSFAWLPQLEYFF 278
Query: 443 LGHNNLE 449
L +NN++
Sbjct: 279 LEYNNIQ 285
Score = 32.0 bits (71), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 20/62 (32%), Positives = 32/62 (51%)
Query: 561 TRIQTLNLSHNNLTGSIPSTFSNLKHVESLDLSNNKLNGKIPHQLVELKTLEVFSVAYNN 620
T I LNL+HN L + F+ + SLD+ N ++ P +L L+V ++ +N
Sbjct: 25 TNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNE 84
Query: 621 LS 622
LS
Sbjct: 85 LS 86
Score = 30.0 bits (66), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 24/87 (27%), Positives = 40/87 (45%)
Query: 537 SLLSGLDLSCNKLIGHIPPQIGNLTRIQTLNLSHNNLTGSIPSTFSNLKHVESLDLSNNK 596
S L+ LD+ N + P L ++ LNL HN L+ TF+ ++ L L +N
Sbjct: 49 SQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNELSQLSDKTFAFCTNLTELHLMSNS 108
Query: 597 LNGKIPHQLVELKTLEVFSVAYNNLSG 623
+ + V+ K L +++N LS
Sbjct: 109 IQKIKNNPFVKQKNLITLDLSHNGLSS 135
Score = 29.6 bits (65), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 24/63 (38%), Positives = 35/63 (55%), Gaps = 2/63 (3%)
Query: 561 TRIQTLNLSHNNLTGSIPSTFSNLK--HVESLDLSNNKLNGKIPHQLVELKTLEVFSVAY 618
T I+ L+LS++ L+ + +TF LK ++ LDLS N LN L LE F + Y
Sbjct: 222 TSIRNLSLSNSQLSTTSNTTFLGLKWTNLTMLDLSYNNLNVVGNDSFAWLPQLEYFFLEY 281
Query: 619 NNL 621
NN+
Sbjct: 282 NNI 284
Score = 29.6 bits (65), Expect = 6.6, Method: Compositional matrix adjust.
Identities = 62/230 (26%), Positives = 94/230 (40%), Gaps = 56/230 (24%)
Query: 238 SFGNMKFLQILDLSNNHLTGEIPEHLAVGCVNLQFLALSNNNLQGHLFSRNFNLTN---- 293
SF +K L+ L++ +N + G I ++ G +NL++L+LSN+ F+ LTN
Sbjct: 324 SFQWLKCLEHLNMEDNDIPG-IKSNMFTGLINLKYLSLSNS------FTSLRTLTNETFV 376
Query: 294 ------LQWLQLEGNRFVGEIPQSLSKCSSLEGLYLNNNS----LLGKIPRWLGNLTRL- 342
L L L N+ + S LE L L N L G+ R L N+ +
Sbjct: 377 SLAHSPLHILNLTKNKISKIESDAFSWLGHLEVLDLGLNEIGQELTGQEWRGLENIFEIY 436
Query: 343 ----QYIIMPNNHLEGPIPVEFCQLDSLQILDISDNNISGSLPSCFHPLSIKQVHLSKNM 398
+Y+ + N +P L L + ++ N+ S PS F PL
Sbjct: 437 LSYNKYLQLTRNSF-ALVP----SLQRLMLRRVALKNVDSS-PSPFQPLR---------- 480
Query: 399 LHGQLKRGTFFNCSSLVTLDLSYNRLNGSIPDWVDGLSQLSHLILGHNNL 448
+L LDLS N + D ++GL +L L L HNNL
Sbjct: 481 --------------NLTILDLSNNNIANINDDMLEGLEKLEILDLQHNNL 516
>pdb|3FXI|A Chain A, Crystal Structure Of The Human Tlr4-Human Md-2-E.Coli Lps
Ra Complex
pdb|3FXI|B Chain B, Crystal Structure Of The Human Tlr4-Human Md-2-E.Coli Lps
Ra Complex
Length = 605
Score = 36.6 bits (83), Expect = 0.044, Method: Compositional matrix adjust.
Identities = 21/56 (37%), Positives = 35/56 (62%), Gaps = 7/56 (12%)
Query: 557 IGNLTRIQTLNLSHNNLTG-SIPSTFSNLKHVESLDLSNNKLNG------KIPHQL 605
IG+L ++ LN++HN + +P FSNL ++E LDLS+NK+ ++ HQ+
Sbjct: 120 IGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQM 175
Score = 35.4 bits (80), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 43/155 (27%), Positives = 65/155 (41%), Gaps = 7/155 (4%)
Query: 145 HDLEYVDLSHIKMNGEFPNWLLENNTKLETLFLVNDSLAGPFRLPIHSHKR-LRQLDVSN 203
+L Y+D+SH F N + + LE L + +S F I + R L LD+S
Sbjct: 421 RNLIYLDISHTHTRVAF-NGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQ 479
Query: 204 NNIRGHIPVKIGDVLPSLYVFNNSMNALDGSIPSSFGNMKFLQILDLSNNHLTGEIPEHL 263
+ P L SL V N S N + + LQ+LD S NH+ + L
Sbjct: 480 CQLEQLSPTAFNS-LSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQEL 538
Query: 264 AVGCVNLQFLALSNNNLQGHLFSRNFNLTNLQWLQ 298
+L FL L+ N+ ++F LQW++
Sbjct: 539 QHFPSSLAFLNLTQNDFACTCEHQSF----LQWIK 569
Score = 34.7 bits (78), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 59/219 (26%), Positives = 97/219 (44%), Gaps = 29/219 (13%)
Query: 187 RLPIHSHKRLRQLDVSNNNIRGHIPVKIGDVLPSLYVFNNSMNALD----------GSIP 236
+ P K L++L ++N +G D LPSL + S N L G+
Sbjct: 318 QFPTLKLKSLKRLTFTSN--KGGNAFSEVD-LPSLEFLDLSRNGLSFKGCCSQSDFGTTS 374
Query: 237 SSFGNMKFLQILDLSNNHLTGEIPEHLAVGCVNLQ-------FLALSN-------NNLQG 282
+ ++ F ++ +S+N L E EHL NL+ FL+L N +
Sbjct: 375 LKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTR 434
Query: 283 HLFSRNFN-LTNLQWLQLEGNRFVGE-IPQSLSKCSSLEGLYLNNNSLLGKIPRWLGNLT 340
F+ FN L++L+ L++ GN F +P ++ +L L L+ L P +L+
Sbjct: 435 VAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLS 494
Query: 341 RLQYIIMPNNHLEGPIPVEFCQLDSLQILDISDNNISGS 379
LQ + M +N+ + L+SLQ+LD S N+I S
Sbjct: 495 SLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTS 533
Score = 34.7 bits (78), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 55/201 (27%), Positives = 90/201 (44%), Gaps = 14/201 (6%)
Query: 261 EHLA-VGCVNLQFLALSNNNLQGHLFSRN--------FNLTNLQWLQLEGN--RFVGEIP 309
+HL V C QF L +L+ F+ N +L +L++L L N F G
Sbjct: 307 QHLELVNCKFGQFPTLKLKSLKRLTFTSNKGGNAFSEVDLPSLEFLDLSRNGLSFKGCCS 366
Query: 310 QSLSKCSSLEGLYLNNNSLLGKIPRWLGNLTRLQYIIMPNNHLEGPIPVE-FCQLDSLQI 368
QS +SL+ L L+ N ++ +LG L +L+++ +++L+ F L +L
Sbjct: 367 QSDFGTTSLKYLDLSFNGVITMSSNFLG-LEQLEHLDFQHSNLKQMSEFSVFLSLRNLIY 425
Query: 369 LDISDNNISGSLPSCFHPLS-IKQVHLSKNMLHGQLKRGTFFNCSSLVTLDLSYNRLNGS 427
LDIS + + F+ LS ++ + ++ N F +L LDLS +L
Sbjct: 426 LDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQL 485
Query: 428 IPDWVDGLSQLSHLILGHNNL 448
P + LS L L + HNN
Sbjct: 486 SPTAFNSLSSLQVLNMSHNNF 506
Score = 30.4 bits (67), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 26/107 (24%), Positives = 52/107 (48%), Gaps = 2/107 (1%)
Query: 1 MSSCEVNGVVRSQGLCSLVHLQELYIASNDLRGSLPWCMANMTSLRILDVSSNQLTGSIS 60
+S CE+ + SL HL L + N ++ + ++SL+ L L S+
Sbjct: 59 LSRCEIQ-TIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNL-ASLE 116
Query: 61 SSPLVHLTSIEELMLSNNYFQIPISLEPLFNYSRLKIFNAENNEIKA 107
+ P+ HL +++EL +++N Q E N + L+ + +N+I++
Sbjct: 117 NFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQS 163
Score = 29.3 bits (64), Expect = 7.4, Method: Compositional matrix adjust.
Identities = 17/63 (26%), Positives = 36/63 (57%), Gaps = 1/63 (1%)
Query: 560 LTRIQTLNLSHNNLTGS-IPSTFSNLKHVESLDLSNNKLNGKIPHQLVELKTLEVFSVAY 618
L+ ++ L ++ N+ + +P F+ L+++ LDLS +L P L +L+V ++++
Sbjct: 444 LSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSH 503
Query: 619 NNL 621
NN
Sbjct: 504 NNF 506
>pdb|4G8A|A Chain A, Crystal Structure Of Human Tlr4 Polymorphic Variant D299g
And T399i In Complex With Md-2 And Lps
pdb|4G8A|B Chain B, Crystal Structure Of Human Tlr4 Polymorphic Variant D299g
And T399i In Complex With Md-2 And Lps
Length = 635
Score = 36.6 bits (83), Expect = 0.045, Method: Compositional matrix adjust.
Identities = 21/56 (37%), Positives = 35/56 (62%), Gaps = 7/56 (12%)
Query: 557 IGNLTRIQTLNLSHNNLTG-SIPSTFSNLKHVESLDLSNNKLNG------KIPHQL 605
IG+L ++ LN++HN + +P FSNL ++E LDLS+NK+ ++ HQ+
Sbjct: 144 IGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQM 199
Score = 36.6 bits (83), Expect = 0.046, Method: Compositional matrix adjust.
Identities = 60/219 (27%), Positives = 98/219 (44%), Gaps = 29/219 (13%)
Query: 187 RLPIHSHKRLRQLDVSNNNIRGHIPVKIGDVLPSLYVFNNSMNALD----------GSIP 236
+ P K L++L ++N +G D LPSL + S N L G+I
Sbjct: 342 QFPTLKLKSLKRLTFTSN--KGGNAFSEVD-LPSLEFLDLSRNGLSFKGCCSQSDFGTIS 398
Query: 237 SSFGNMKFLQILDLSNNHLTGEIPEHLAVGCVNLQ-------FLALSN-------NNLQG 282
+ ++ F ++ +S+N L E EHL NL+ FL+L N +
Sbjct: 399 LKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTR 458
Query: 283 HLFSRNFN-LTNLQWLQLEGNRFVGE-IPQSLSKCSSLEGLYLNNNSLLGKIPRWLGNLT 340
F+ FN L++L+ L++ GN F +P ++ +L L L+ L P +L+
Sbjct: 459 VAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLS 518
Query: 341 RLQYIIMPNNHLEGPIPVEFCQLDSLQILDISDNNISGS 379
LQ + M +N+ + L+SLQ+LD S N+I S
Sbjct: 519 SLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTS 557
Score = 35.4 bits (80), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 43/155 (27%), Positives = 65/155 (41%), Gaps = 7/155 (4%)
Query: 145 HDLEYVDLSHIKMNGEFPNWLLENNTKLETLFLVNDSLAGPFRLPIHSHKR-LRQLDVSN 203
+L Y+D+SH F N + + LE L + +S F I + R L LD+S
Sbjct: 445 RNLIYLDISHTHTRVAF-NGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQ 503
Query: 204 NNIRGHIPVKIGDVLPSLYVFNNSMNALDGSIPSSFGNMKFLQILDLSNNHLTGEIPEHL 263
+ P L SL V N S N + + LQ+LD S NH+ + L
Sbjct: 504 CQLEQLSPTAFNS-LSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQEL 562
Query: 264 AVGCVNLQFLALSNNNLQGHLFSRNFNLTNLQWLQ 298
+L FL L+ N+ ++F LQW++
Sbjct: 563 QHFPSSLAFLNLTQNDFACTCEHQSF----LQWIK 593
Score = 32.7 bits (73), Expect = 0.64, Method: Compositional matrix adjust.
Identities = 55/201 (27%), Positives = 89/201 (44%), Gaps = 14/201 (6%)
Query: 261 EHLA-VGCVNLQFLALSNNNLQGHLFSRN--------FNLTNLQWLQLEGN--RFVGEIP 309
+HL V C QF L +L+ F+ N +L +L++L L N F G
Sbjct: 331 QHLELVNCKFGQFPTLKLKSLKRLTFTSNKGGNAFSEVDLPSLEFLDLSRNGLSFKGCCS 390
Query: 310 QSLSKCSSLEGLYLNNNSLLGKIPRWLGNLTRLQYIIMPNNHLEGPIPVE-FCQLDSLQI 368
QS SL+ L L+ N ++ +LG L +L+++ +++L+ F L +L
Sbjct: 391 QSDFGTISLKYLDLSFNGVITMSSNFLG-LEQLEHLDFQHSNLKQMSEFSVFLSLRNLIY 449
Query: 369 LDISDNNISGSLPSCFHPLS-IKQVHLSKNMLHGQLKRGTFFNCSSLVTLDLSYNRLNGS 427
LDIS + + F+ LS ++ + ++ N F +L LDLS +L
Sbjct: 450 LDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQL 509
Query: 428 IPDWVDGLSQLSHLILGHNNL 448
P + LS L L + HNN
Sbjct: 510 SPTAFNSLSSLQVLNMSHNNF 530
Score = 30.8 bits (68), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 26/107 (24%), Positives = 52/107 (48%), Gaps = 2/107 (1%)
Query: 1 MSSCEVNGVVRSQGLCSLVHLQELYIASNDLRGSLPWCMANMTSLRILDVSSNQLTGSIS 60
+S CE+ + SL HL L + N ++ + ++SL+ L L S+
Sbjct: 83 LSRCEIQ-TIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNL-ASLE 140
Query: 61 SSPLVHLTSIEELMLSNNYFQIPISLEPLFNYSRLKIFNAENNEIKA 107
+ P+ HL +++EL +++N Q E N + L+ + +N+I++
Sbjct: 141 NFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQS 187
Score = 29.6 bits (65), Expect = 6.5, Method: Compositional matrix adjust.
Identities = 17/63 (26%), Positives = 36/63 (57%), Gaps = 1/63 (1%)
Query: 560 LTRIQTLNLSHNNLTGS-IPSTFSNLKHVESLDLSNNKLNGKIPHQLVELKTLEVFSVAY 618
L+ ++ L ++ N+ + +P F+ L+++ LDLS +L P L +L+V ++++
Sbjct: 468 LSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSH 527
Query: 619 NNL 621
NN
Sbjct: 528 NNF 530
>pdb|2FT3|A Chain A, Crystal Structure Of The Biglycan Dimer Core Protein
pdb|2FT3|B Chain B, Crystal Structure Of The Biglycan Dimer Core Protein
pdb|2FT3|C Chain C, Crystal Structure Of The Biglycan Dimer Core Protein
pdb|2FT3|D Chain D, Crystal Structure Of The Biglycan Dimer Core Protein
pdb|2FT3|E Chain E, Crystal Structure Of The Biglycan Dimer Core Protein
pdb|2FT3|F Chain F, Crystal Structure Of The Biglycan Dimer Core Protein
Length = 332
Score = 36.6 bits (83), Expect = 0.050, Method: Compositional matrix adjust.
Identities = 53/193 (27%), Positives = 86/193 (44%), Gaps = 12/193 (6%)
Query: 171 KLETLFLVNDSLAGPFRLPIHSHKRLRQLDVSNNNIRGHIPVKIGDVLPSLYVFNNSMNA 230
KL+ L++ + L +P + L +L + +N IR +P + L ++ N
Sbjct: 103 KLQKLYISKNHLV---EIPPNLPSSLVELRIHDNRIR-KVPKGVFSGLRNMNCIEMGGNP 158
Query: 231 LD--GSIPSSFGNMKFLQILDLSNNHLTGEIPEHLAVGCVNLQFLALSNNNLQGHLFSRN 288
L+ G P +F +K L L +S LTG IP+ L L L L +N +Q
Sbjct: 159 LENSGFEPGAFDGLK-LNYLRISEAKLTG-IPKDLPE---TLNELHLDHNKIQAIELEDL 213
Query: 289 FNLTNLQWLQLEGNRFVGEIPQSLSKCSSLEGLYLNNNSLLGKIPRWLGNLTRLQYIIMP 348
+ L L L N+ SLS +L L+L+NN L ++P L +L LQ + +
Sbjct: 214 LRYSKLYRLGLGHNQIRMIENGSLSFLPTLRELHLDNNKL-SRVPAGLPDLKLLQVVYLH 272
Query: 349 NNHLEGPIPVEFC 361
N++ +FC
Sbjct: 273 TNNITKVGVNDFC 285
Score = 30.4 bits (67), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 26/101 (25%), Positives = 42/101 (41%), Gaps = 27/101 (26%)
Query: 561 TRIQTLNLSHNNLTGSIPSTFSNLKHVESLDLSNNKLNGKIPHQLVELKTLEVFSVAYNN 620
+++ L L HN + + S L + L L NNKL+ ++P L +LK L+V + NN
Sbjct: 217 SKLYRLGLGHNQIRMIENGSLSFLPTLRELHLDNNKLS-RVPAGLPDLKLLQVVYLHTNN 275
Query: 621 LS--------------------------GEIPEWKAQFATF 635
++ +P W+ Q ATF
Sbjct: 276 ITKVGVNDFCPVGFGVKRAYYNGISLFNNPVPYWEVQPATF 316
>pdb|2Z62|A Chain A, Crystal Structure Of The Tv3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
pdb|2Z65|A Chain A, Crystal Structure Of The Human Tlr4 Tv3
Hybrid-Md-2-Eritoran Complex
pdb|2Z65|B Chain B, Crystal Structure Of The Human Tlr4 Tv3
Hybrid-Md-2-Eritoran Complex
Length = 276
Score = 36.6 bits (83), Expect = 0.055, Method: Compositional matrix adjust.
Identities = 19/44 (43%), Positives = 30/44 (68%), Gaps = 1/44 (2%)
Query: 557 IGNLTRIQTLNLSHNNLTG-SIPSTFSNLKHVESLDLSNNKLNG 599
IG+L ++ LN++HN + +P FSNL ++E LDLS+NK+
Sbjct: 120 IGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQS 163
Score = 30.0 bits (66), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 26/107 (24%), Positives = 52/107 (48%), Gaps = 2/107 (1%)
Query: 1 MSSCEVNGVVRSQGLCSLVHLQELYIASNDLRGSLPWCMANMTSLRILDVSSNQLTGSIS 60
+S CE+ + SL HL L + N ++ + ++SL+ L L S+
Sbjct: 59 LSRCEIQ-TIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNL-ASLE 116
Query: 61 SSPLVHLTSIEELMLSNNYFQIPISLEPLFNYSRLKIFNAENNEIKA 107
+ P+ HL +++EL +++N Q E N + L+ + +N+I++
Sbjct: 117 NFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQS 163
>pdb|2Z63|A Chain A, Crystal Structure Of The Tv8 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
Length = 570
Score = 36.6 bits (83), Expect = 0.055, Method: Compositional matrix adjust.
Identities = 21/56 (37%), Positives = 35/56 (62%), Gaps = 7/56 (12%)
Query: 557 IGNLTRIQTLNLSHNNLTG-SIPSTFSNLKHVESLDLSNNKLNG------KIPHQL 605
IG+L ++ LN++HN + +P FSNL ++E LDLS+NK+ ++ HQ+
Sbjct: 120 IGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQM 175
Score = 36.2 bits (82), Expect = 0.066, Method: Compositional matrix adjust.
Identities = 118/486 (24%), Positives = 208/486 (42%), Gaps = 56/486 (11%)
Query: 1 MSSCEVNGVVRSQGLCSLVHLQELYIASNDLRGSLPWCMANMTSLRILDVSSNQLTGSIS 60
+S CE+ + SL HL L + N ++ + ++SL+ L L S+
Sbjct: 59 LSRCEIQ-TIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNL-ASLE 116
Query: 61 SSPLVHLTSIEELMLSNNYFQIPISLEPLFNYSRLKIFNAENNEIKA----EITESHSL- 115
+ P+ HL +++EL +++N Q E N + L+ + +N+I++ ++ H +
Sbjct: 117 NFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMP 176
Query: 116 ---------------IAP----KFQLNTLSLSSNYGDGFIFPKFLYHQHDLEYVDLSHIK 156
I P + +L+ L+L +N+ + + LE H
Sbjct: 177 LLNLSLDLSLNPMNFIQPGAFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEV----HRL 232
Query: 157 MNGEFPNWL-LENNTKLETLFLVNDSLAGPFRLPIHSHKRLRQLDVSN--NNIRGH--IP 211
+ GEF N LE K L N ++ FRL + +D+ N N+ +
Sbjct: 233 VLGEFRNEGNLEKFDKSALEGLCNLTIE-EFRLAYLDYYLDDIIDLFNCLTNVSSFSLVS 291
Query: 212 VKIGDVLPSLYVFN----NSMNALDGSIPSSFGNMKFLQILDLSNNHLTGEIPEHLAVGC 267
V I V Y F +N G P+ +K L+ L ++N E V
Sbjct: 292 VTIERVKDFSYNFGWQHLELVNCKFGQFPTL--KLKSLKRLTFTSNKGGNAFSE---VDL 346
Query: 268 VNLQFLALSNNNL--QGHLFSRNFNLTNLQWLQLEGNRFVGEIPQSLSKCSSLEGLYLNN 325
+L+FL LS N L +G +F T+L++L L N + + + LE L +
Sbjct: 347 PSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVI-TMSSNFLGLEQLEHLDFQH 405
Query: 326 NSL--LGKIPRWLGNLTRLQYIIMPNNHLEGPIPVEFCQLDSLQILDISDNNISGS-LPS 382
++L + + +L +L L Y+ + + H F L SL++L ++ N+ + LP
Sbjct: 406 SNLKQMSEFSVFL-SLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPD 464
Query: 383 CFHPL-SIKQVHLSKNMLHGQLKRGTFFNCSSLVTLDLSYNRLNGSIPDWV-DGLSQLSH 440
F L ++ + LS+ L QL F + SSL L+++ N+L S+PD + D L+ L
Sbjct: 465 IFTELRNLTFLDLSQCQLE-QLSPTAFNSLSSLQVLNMASNQLK-SVPDGIFDRLTSLQK 522
Query: 441 LILGHN 446
+ L N
Sbjct: 523 IWLHTN 528
>pdb|3ULA|A Chain A, Crystal Structure Of The Tv3 Mutant F63w-Md-2-Eritoran
Complex
pdb|3ULA|C Chain C, Crystal Structure Of The Tv3 Mutant F63w-Md-2-Eritoran
Complex
Length = 279
Score = 36.2 bits (82), Expect = 0.059, Method: Compositional matrix adjust.
Identities = 19/42 (45%), Positives = 30/42 (71%), Gaps = 1/42 (2%)
Query: 557 IGNLTRIQTLNLSHNNLTG-SIPSTFSNLKHVESLDLSNNKL 597
IG+L ++ LN++HN + +P FSNL ++E LDLS+NK+
Sbjct: 122 IGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKI 163
Score = 30.0 bits (66), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 26/107 (24%), Positives = 52/107 (48%), Gaps = 2/107 (1%)
Query: 1 MSSCEVNGVVRSQGLCSLVHLQELYIASNDLRGSLPWCMANMTSLRILDVSSNQLTGSIS 60
+S CE+ + SL HL L + N ++ + ++SL+ L L S+
Sbjct: 61 LSRCEIQ-TIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNL-ASLE 118
Query: 61 SSPLVHLTSIEELMLSNNYFQIPISLEPLFNYSRLKIFNAENNEIKA 107
+ P+ HL +++EL +++N Q E N + L+ + +N+I++
Sbjct: 119 NFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQS 165
>pdb|3UL9|A Chain A, Structure Of The Tv3 Mutant M41e
Length = 278
Score = 36.2 bits (82), Expect = 0.061, Method: Compositional matrix adjust.
Identities = 19/42 (45%), Positives = 30/42 (71%), Gaps = 1/42 (2%)
Query: 557 IGNLTRIQTLNLSHNNLTG-SIPSTFSNLKHVESLDLSNNKL 597
IG+L ++ LN++HN + +P FSNL ++E LDLS+NK+
Sbjct: 121 IGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKI 162
Score = 30.4 bits (67), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 26/107 (24%), Positives = 52/107 (48%), Gaps = 2/107 (1%)
Query: 1 MSSCEVNGVVRSQGLCSLVHLQELYIASNDLRGSLPWCMANMTSLRILDVSSNQLTGSIS 60
+S CE+ + SL HL L + N ++ + ++SL+ L L S+
Sbjct: 60 LSRCEIQ-TIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNL-ASLE 117
Query: 61 SSPLVHLTSIEELMLSNNYFQIPISLEPLFNYSRLKIFNAENNEIKA 107
+ P+ HL +++EL +++N Q E N + L+ + +N+I++
Sbjct: 118 NFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQS 164
>pdb|3UL8|A Chain A, Crystal Structure Of The Tv3 Mutant V134l
Length = 279
Score = 36.2 bits (82), Expect = 0.061, Method: Compositional matrix adjust.
Identities = 19/42 (45%), Positives = 30/42 (71%), Gaps = 1/42 (2%)
Query: 557 IGNLTRIQTLNLSHNNLTG-SIPSTFSNLKHVESLDLSNNKL 597
IG+L ++ LN++HN + +P FSNL ++E LDLS+NK+
Sbjct: 122 IGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKI 163
Score = 29.6 bits (65), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 26/107 (24%), Positives = 52/107 (48%), Gaps = 2/107 (1%)
Query: 1 MSSCEVNGVVRSQGLCSLVHLQELYIASNDLRGSLPWCMANMTSLRILDVSSNQLTGSIS 60
+S CE+ + SL HL L + N ++ + ++SL+ L L S+
Sbjct: 61 LSRCEIQ-TIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVALETNL-ASLE 118
Query: 61 SSPLVHLTSIEELMLSNNYFQIPISLEPLFNYSRLKIFNAENNEIKA 107
+ P+ HL +++EL +++N Q E N + L+ + +N+I++
Sbjct: 119 NFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQS 165
>pdb|3UL7|A Chain A, Crystal Structure Of The Tv3 Mutant F63w
Length = 278
Score = 36.2 bits (82), Expect = 0.062, Method: Compositional matrix adjust.
Identities = 19/42 (45%), Positives = 30/42 (71%), Gaps = 1/42 (2%)
Query: 557 IGNLTRIQTLNLSHNNLTG-SIPSTFSNLKHVESLDLSNNKL 597
IG+L ++ LN++HN + +P FSNL ++E LDLS+NK+
Sbjct: 121 IGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKI 162
Score = 30.0 bits (66), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 26/107 (24%), Positives = 52/107 (48%), Gaps = 2/107 (1%)
Query: 1 MSSCEVNGVVRSQGLCSLVHLQELYIASNDLRGSLPWCMANMTSLRILDVSSNQLTGSIS 60
+S CE+ + SL HL L + N ++ + ++SL+ L L S+
Sbjct: 60 LSRCEIQ-TIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNL-ASLE 117
Query: 61 SSPLVHLTSIEELMLSNNYFQIPISLEPLFNYSRLKIFNAENNEIKA 107
+ P+ HL +++EL +++N Q E N + L+ + +N+I++
Sbjct: 118 NFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQS 164
>pdb|2Z66|A Chain A, Crystal Structure Of The Vt3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
pdb|2Z66|B Chain B, Crystal Structure Of The Vt3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
pdb|2Z66|C Chain C, Crystal Structure Of The Vt3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
pdb|2Z66|D Chain D, Crystal Structure Of The Vt3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
Length = 306
Score = 35.8 bits (81), Expect = 0.079, Method: Compositional matrix adjust.
Identities = 43/155 (27%), Positives = 66/155 (42%), Gaps = 7/155 (4%)
Query: 145 HDLEYVDLSHIKMNGEFPNWLLENNTKLETLFLVNDSLAGPFRLPIHSHKR-LRQLDVSN 203
+L Y+D+SH F N + + LE L + +S F I + R L LD+S
Sbjct: 126 RNLIYLDISHTHTRVAF-NGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQ 184
Query: 204 NNIRGHIPVKIGDVLPSLYVFNNSMNALDGSIPSSFGNMKFLQILDLSNNHLTGEIPEHL 263
+ P + L SL V N S N + + LQ+LD S NH+ + L
Sbjct: 185 CQLEQLSPTAF-NSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQEL 243
Query: 264 AVGCVNLQFLALSNNNLQGHLFSRNFNLTNLQWLQ 298
+L FL L+ N+ ++F LQW++
Sbjct: 244 QHFPSSLAFLNLTQNDFACTCEHQSF----LQWIK 274
Score = 32.7 bits (73), Expect = 0.70, Method: Compositional matrix adjust.
Identities = 54/208 (25%), Positives = 94/208 (45%), Gaps = 27/208 (12%)
Query: 198 QLDVSNNNIRGHIPVKIGDVLPSLYVFNNSMNALD----------GSIPSSFGNMKFLQI 247
+L++ +N ++ +P + D L L + S N L G+ + ++ F +
Sbjct: 32 RLELESNKLQS-LPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSFNGV 90
Query: 248 LDLSNNHLTGEIPEHLAVGCVNLQ-------FLALSN-------NNLQGHLFSRNFN-LT 292
+ +S+N L E EHL NL+ FL+L N + F+ FN L+
Sbjct: 91 ITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLS 150
Query: 293 NLQWLQLEGNRFVGE-IPQSLSKCSSLEGLYLNNNSLLGKIPRWLGNLTRLQYIIMPNNH 351
+L+ L++ GN F +P ++ +L L L+ L P +L+ LQ + M +N+
Sbjct: 151 SLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNN 210
Query: 352 LEGPIPVEFCQLDSLQILDISDNNISGS 379
+ L+SLQ+LD S N+I S
Sbjct: 211 FFSLDTFPYKCLNSLQVLDYSLNHIMTS 238
Score = 32.3 bits (72), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 52/180 (28%), Positives = 78/180 (43%), Gaps = 5/180 (2%)
Query: 273 LALSNNNLQGHLFSRNFNLTNLQWLQLEGN--RFVGEIPQSLSKCSSLEGLYLNNNSLLG 330
L L +N LQ LT L L L N F G QS +SL+ L L+ N ++
Sbjct: 33 LELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSFNGVIT 92
Query: 331 KIPRWLGNLTRLQYIIMPNNHLEGPIPVE-FCQLDSLQILDISDNNISGSLPSCFHPLSI 389
+LG L +L+++ +++L+ F L +L LDIS + + F+ LS
Sbjct: 93 MSSNFLG-LEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSS 151
Query: 390 KQV-HLSKNMLHGQLKRGTFFNCSSLVTLDLSYNRLNGSIPDWVDGLSQLSHLILGHNNL 448
+V ++ N F +L LDLS +L P + LS L L + HNN
Sbjct: 152 LEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNF 211
Score = 29.3 bits (64), Expect = 7.7, Method: Compositional matrix adjust.
Identities = 17/63 (26%), Positives = 36/63 (57%), Gaps = 1/63 (1%)
Query: 560 LTRIQTLNLSHNNLTGS-IPSTFSNLKHVESLDLSNNKLNGKIPHQLVELKTLEVFSVAY 618
L+ ++ L ++ N+ + +P F+ L+++ LDLS +L P L +L+V ++++
Sbjct: 149 LSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSH 208
Query: 619 NNL 621
NN
Sbjct: 209 NNF 211
>pdb|2WFH|A Chain A, The Human Slit 2 Dimerization Domain D4
pdb|2WFH|B Chain B, The Human Slit 2 Dimerization Domain D4
Length = 193
Score = 35.0 bits (79), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 22/75 (29%), Positives = 42/75 (56%), Gaps = 1/75 (1%)
Query: 553 IPPQIGNLTRIQTLNLSHNNLTGSIPSTFSNLKHVESLDLSNNKLNGKIPHQLVELKTLE 612
+P ++ N + ++LS+N ++ +FSN+ + +L LS N+L P LK+L
Sbjct: 46 VPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRLRCIPPRTFDGLKSLR 105
Query: 613 VFSVAYNNLSGEIPE 627
+ S+ N++S +PE
Sbjct: 106 LLSLHGNDIS-VVPE 119
Score = 33.9 bits (76), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 30/92 (32%), Positives = 47/92 (51%), Gaps = 1/92 (1%)
Query: 297 LQLEGNRFVGEIPQSLSKCSSLEGLYLNNNSLLGKIPRWLGNLTRLQYIIMPNNHLEGPI 356
L L+GN+F +P+ LS L + L+NN + + N+T+L +I+ N L
Sbjct: 36 LYLDGNQFT-LVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRLRCIP 94
Query: 357 PVEFCQLDSLQILDISDNNISGSLPSCFHPLS 388
P F L SL++L + N+IS F+ LS
Sbjct: 95 PRTFDGLKSLRLLSLHGNDISVVPEGAFNDLS 126
Score = 32.3 bits (72), Expect = 0.86, Method: Compositional matrix adjust.
Identities = 28/93 (30%), Positives = 38/93 (40%), Gaps = 24/93 (25%)
Query: 356 IPVEFCQLDSLQILDISDNNISGSLPSCFHPLSIKQVHLSKNMLHGQLKRGTFFNCSSLV 415
+P E L ++D+S+N IS L +F N + L+
Sbjct: 46 VPKELSNYKHLTLIDLSNNRIS------------------------TLSNQSFSNMTQLL 81
Query: 416 TLDLSYNRLNGSIPDWVDGLSQLSHLILGHNNL 448
TL LSYNRL P DGL L L L N++
Sbjct: 82 TLILSYNRLRCIPPRTFDGLKSLRLLSLHGNDI 114
Score = 30.8 bits (68), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 25/83 (30%), Positives = 39/83 (46%)
Query: 539 LSGLDLSCNKLIGHIPPQIGNLTRIQTLNLSHNNLTGSIPSTFSNLKHVESLDLSNNKLN 598
L+ +DLS N++ N+T++ TL LS+N L P TF LK + L L N ++
Sbjct: 56 LTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRLRCIPPRTFDGLKSLRLLSLHGNDIS 115
Query: 599 GKIPHQLVELKTLEVFSVAYNNL 621
+L L ++ N L
Sbjct: 116 VVPEGAFNDLSALSHLAIGANPL 138
>pdb|2Z81|A Chain A, Crystal Structure Of The Tlr1-tlr2 Heterodimer Induced By
Binding Of A Tri-acylated Lipopeptide
pdb|2Z82|A Chain A, Crystal Structure Of The Tlr1-Tlr2 Heterodimer Induced By
Binding Of A Tri-Acylated Lipopeptide
Length = 549
Score = 35.0 bits (79), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 62/219 (28%), Positives = 101/219 (46%), Gaps = 43/219 (19%)
Query: 235 IPSSFG-NMKFLQILDLSNNHLTGEIPEHLAVGCV--NLQFLALSNNNLQGHLFSRNFNL 291
+P SF ++K L+ LDLS N + E ++ A +LQ L LS N+L+ + L
Sbjct: 325 VPCSFSQHLKSLEFLDLSENLMVEEYLKNSACKGAWPSLQTLVLSQNHLRSMQKTGEILL 384
Query: 292 T--NLQWLQLEGNRFVGEIPQSLSKCSSLEGL-YLNNNSLLGKIPRWLGNLTRLQYIIMP 348
T NL L + N F +P S C E + +LN +S
Sbjct: 385 TLKNLTSLDISRNTF-HPMPDS---CQWPEKMRFLNLSS--------------------- 419
Query: 349 NNHLEGPIPVEFCQLDSLQILDISDNNISGSLPSCFHPLSIKQVHLSKNMLHGQLKRGTF 408
G V+ C +L++LD+S+NN+ S F P ++++++S+N L L +
Sbjct: 420 ----TGIRVVKTCIPQTLEVLDVSNNNLDSF--SLFLP-RLQELYISRNKLK-TLPDASL 471
Query: 409 FNCSSLVTLDLSYNRLNGSIPDWV-DGLSQLSHLILGHN 446
F L+ + +S N+L S+PD + D L+ L + L N
Sbjct: 472 FPV--LLVMKISRNQLK-SVPDGIFDRLTSLQKIWLHTN 507
Score = 32.7 bits (73), Expect = 0.73, Method: Compositional matrix adjust.
Identities = 55/204 (26%), Positives = 97/204 (47%), Gaps = 17/204 (8%)
Query: 196 LRQLDVSNNNIR--GHIPVKIGDVLPSLYVFNNSMNALDGSIPSSFGNMKFLQILDLSNN 253
++ LD+S N I GH ++ L L + ++ +N ++G S G+ L+ LDLS+N
Sbjct: 28 MKSLDLSFNKITYIGHGDLRACANLQVLILKSSRINTIEGDAFYSLGS---LEHLDLSDN 84
Query: 254 HLTGEIPEHLAVGCVNLQFLALSNNNLQGHLFSRNF-NLTNLQWLQLEGNRFVGEIPQ-S 311
HL+ + +L++L L N Q + F NLTNLQ L++ EI +
Sbjct: 85 HLSS-LSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRID 143
Query: 312 LSKCSSLEGLYLNNNSLLGKIPRWLGNLTRLQYIIMPNNHL-EGPIPVEFCQ--LDSLQI 368
+ +SL L + SL + L ++ + ++ + HL E +E L S++
Sbjct: 144 FAGLTSLNELEIKALSLRNYQSQSLKSIRDIHHLTL---HLSESAFLLEIFADILSSVRY 200
Query: 369 LDISDNNISGSLPSCFHPLSIKQV 392
L++ D N++ F PL + +V
Sbjct: 201 LELRDTNLARFQ---FSPLPVDEV 221
Score = 30.0 bits (66), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 41/139 (29%), Positives = 58/139 (41%), Gaps = 28/139 (20%)
Query: 234 SIPSSFGNMKFLQILDLSNNHLTGEIPEHLAVGCVNLQFLALSNNNLQGHLFSRNFNLTN 293
SIPS G ++ LDLS N +T I C NLQ L L ++ +
Sbjct: 19 SIPS--GLTAAMKSLDLSFNKIT-YIGHGDLRACANLQVLILKSSRIN------------ 63
Query: 294 LQWLQLEGNRFVGEIPQSLSKCSSLEGLYLNNNSLLGKIPRWLGNLTRLQYI-IMPNNHL 352
+EG+ F SLE L L++N L W G L+ L+Y+ +M N +
Sbjct: 64 ----TIEGDAFYS--------LGSLEHLDLSDNHLSSLSSSWFGPLSSLKYLNLMGNPYQ 111
Query: 353 EGPIPVEFCQLDSLQILDI 371
+ F L +LQ L I
Sbjct: 112 TLGVTSLFPNLTNLQTLRI 130
>pdb|3VQ1|A Chain A, Crystal Structure Of Mouse Tlr4MD-2LIPID IVA COMPLEX
pdb|3VQ1|B Chain B, Crystal Structure Of Mouse Tlr4MD-2LIPID IVA COMPLEX
pdb|3VQ2|A Chain A, Crystal Structure Of Mouse Tlr4MD-2LPS COMPLEX
pdb|3VQ2|B Chain B, Crystal Structure Of Mouse Tlr4MD-2LPS COMPLEX
Length = 606
Score = 34.7 bits (78), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 105/471 (22%), Positives = 183/471 (38%), Gaps = 47/471 (9%)
Query: 1 MSSCEVNGVVRSQGLCSLVHLQELYIASNDLRGSLPWCMANMTSLRILDVSSNQLTGSIS 60
+S CE+ + + L HL L + N ++ P + +TSL L +L S+
Sbjct: 63 LSRCEIE-TIEDKAWHGLHHLSNLILTGNPIQSFSPGSFSGLTSLENLVAVETKL-ASLE 120
Query: 61 SSPLVHLTSIEELMLSNNYFQIPISLEPLF-NYSRLKIFNAENNEIKAEITESHSLIAPK 119
S P+ L ++++L +++N+ L F N + L + N I+ +
Sbjct: 121 SFPIGQLITLKKLNVAHNFIH-SCKLPAYFSNLTNLVHVDLSYNYIQTITVNDLQFLREN 179
Query: 120 FQLN-TLSLSSNYGDGFIFPKFLYHQHDLEYVDLSHIKMNGEFPNWLLENNTKLETLFLV 178
Q+N +L +S N P + + L + + G F N++ + L
Sbjct: 180 PQVNLSLDMSLN-------PIDFIQDQAFQGIKLHELTLRGNF------NSSNIMKTCLQ 226
Query: 179 NDSLAGPFRLPIHSHKRLRQLDVSNNNIRGHIPVKIGDVLPSLYVFNNSMNALDGSIP-S 237
N + RL + K R L++ I + DV + + + D +
Sbjct: 227 NLAGLHVHRLILGEFKDERNLEI----FEPSIMEGLCDVTIDEFRLTYTNDFSDDIVKFH 282
Query: 238 SFGNMKFLQILDLSNNHLTGEIPEHLA------VGCVNLQF----------LALSNNNLQ 281
N+ + + +S +L ++P+H + C QF L L+ N +
Sbjct: 283 CLANVSAMSLAGVSIKYLE-DVPKHFKWQSLSIIRCQLKQFPTLDLPFLKSLTLTMN--K 339
Query: 282 GHLFSRNFNLTNLQWLQLEGNR--FVGEIPQSLSKCSSLEGLYLNNNSLLGKIPRWLGNL 339
G + + L +L +L L N F G S +SL L L+ N + ++G L
Sbjct: 340 GSISFKKVALPSLSYLDLSRNALSFSGCCSYSDLGTNSLRHLDLSFNGAIIMSANFMG-L 398
Query: 340 TRLQYIIMPNNHLEGPIPVE-FCQLDSLQILDISDNNISGSLPSCFHPL-SIKQVHLSKN 397
LQ++ ++ L+ F L+ L LDIS N F L S+ + ++ N
Sbjct: 399 EELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYTNTKIDFDGIFLGLTSLNTLKMAGN 458
Query: 398 MLHGQLKRGTFFNCSSLVTLDLSYNRLNGSIPDWVDGLSQLSHLILGHNNL 448
F N ++L LDLS +L D L +L L + HNNL
Sbjct: 459 SFKDNTLSNVFANTTNLTFLDLSKCQLEQISWGVFDTLHRLQLLNMSHNNL 509
Score = 32.0 bits (71), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 35/124 (28%), Positives = 53/124 (42%), Gaps = 9/124 (7%)
Query: 539 LSGLDLSCNKLIGHIPPQIGNLTRIQTLNLSHNNLTGSIPSTFSNLKHVESLDLSNNKLN 598
L+ LDLS +L L R+Q LN+SHNNL S ++ L + +LD S N++
Sbjct: 475 LTFLDLSKCQLEQISWGVFDTLHRLQLLNMSHNNLLFLDSSHYNQLYSLSTLDCSFNRIE 534
Query: 599 GKIPHQLVELKTLEVF--SVAYNNLSGEIPEWKAQFATFNESSYEGNTFLCGLPLPICRS 656
L+ F S+A+ NL+ + F + E FL + C +
Sbjct: 535 -------TSKGILQHFPKSLAFFNLTNNSVACICEHQKFLQWVKEQKQFLVNVEQMTCAT 587
Query: 657 PATM 660
P M
Sbjct: 588 PVEM 591
Score = 29.6 bits (65), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 16/40 (40%), Positives = 27/40 (67%), Gaps = 1/40 (2%)
Query: 557 IGNLTRIQTLNLSHNNL-TGSIPSTFSNLKHVESLDLSNN 595
IG L ++ LN++HN + + +P+ FSNL ++ +DLS N
Sbjct: 124 IGQLITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYN 163
>pdb|2XOT|A Chain A, Crystal Structure Of Neuronal Leucine Rich Repeat Protein
Amigo-1
pdb|2XOT|B Chain B, Crystal Structure Of Neuronal Leucine Rich Repeat Protein
Amigo-1
Length = 361
Score = 34.3 bits (77), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 40/146 (27%), Positives = 65/146 (44%), Gaps = 7/146 (4%)
Query: 235 IPSSFGNMKFLQILDLSNNHLTGEIPEHLAVGCVNLQFLALSNNNLQGHLFSRNFNLTNL 294
+P S + + +LDLS+N+L+ E NL L LS+N+L + NL
Sbjct: 33 VPQSLPS--YTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNL 90
Query: 295 QWLQLEGNRFVGEIPQSLSKCSSLEGLYLNNNSLLGKIPRWLGNLTRLQYIIMPNNHLEG 354
++L L N S +LE L L NN ++ ++ +LQ + + N +
Sbjct: 91 RYLDLSSNHLHTLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQI-S 149
Query: 355 PIPVEFC----QLDSLQILDISDNNI 376
PVE +L L +LD+S N +
Sbjct: 150 RFPVELIKDGNKLPKLMLLDLSSNKL 175
Score = 30.0 bits (66), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 38/137 (27%), Positives = 63/137 (45%), Gaps = 3/137 (2%)
Query: 308 IPQSLSKCSSLEGLYLNNNSLLGKIPRWL-GNLTRLQYIIMPNNHLEGPIPVEFCQLDSL 366
+PQSL ++L L NN S L W LT L +++ +NHL F + +L
Sbjct: 33 VPQSLPSYTALLDLSHNNLSRLR--AEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNL 90
Query: 367 QILDISDNNISGSLPSCFHPLSIKQVHLSKNMLHGQLKRGTFFNCSSLVTLDLSYNRLNG 426
+ LD+S N++ F L +V L N + R F + + L L LS N+++
Sbjct: 91 RYLDLSSNHLHTLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQISR 150
Query: 427 SIPDWVDGLSQLSHLIL 443
+ + ++L L+L
Sbjct: 151 FPVELIKDGNKLPKLML 167
>pdb|2Z64|A Chain A, Crystal Structure Of Mouse Tlr4 And Mouse Md-2 Complex
Length = 599
Score = 34.3 bits (77), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 105/471 (22%), Positives = 183/471 (38%), Gaps = 47/471 (9%)
Query: 1 MSSCEVNGVVRSQGLCSLVHLQELYIASNDLRGSLPWCMANMTSLRILDVSSNQLTGSIS 60
+S CE+ + + L HL L + N ++ P + +TSL L +L S+
Sbjct: 58 LSRCEIE-TIEDKAWHGLHHLSNLILTGNPIQSFSPGSFSGLTSLENLVAVETKL-ASLE 115
Query: 61 SSPLVHLTSIEELMLSNNYFQIPISLEPLF-NYSRLKIFNAENNEIKAEITESHSLIAPK 119
S P+ L ++++L +++N+ L F N + L + N I+ +
Sbjct: 116 SFPIGQLITLKKLNVAHNFIH-SCKLPAYFSNLTNLVHVDLSYNYIQTITVNDLQFLREN 174
Query: 120 FQLN-TLSLSSNYGDGFIFPKFLYHQHDLEYVDLSHIKMNGEFPNWLLENNTKLETLFLV 178
Q+N +L +S N P + + L + + G F N++ + L
Sbjct: 175 PQVNLSLDMSLN-------PIDFIQDQAFQGIKLHELTLRGNF------NSSNIMKTCLQ 221
Query: 179 NDSLAGPFRLPIHSHKRLRQLDVSNNNIRGHIPVKIGDVLPSLYVFNNSMNALDGSIP-S 237
N + RL + K R L++ I + DV + + + D +
Sbjct: 222 NLAGLHVHRLILGEFKDERNLEI----FEPSIMEGLCDVTIDEFRLTYTNDFSDDIVKFH 277
Query: 238 SFGNMKFLQILDLSNNHLTGEIPEHLA------VGCVNLQF----------LALSNNNLQ 281
N+ + + +S +L ++P+H + C QF L L+ N +
Sbjct: 278 CLANVSAMSLAGVSIKYLE-DVPKHFKWQSLSIIRCQLKQFPTLDLPFLKSLTLTMN--K 334
Query: 282 GHLFSRNFNLTNLQWLQLEGNR--FVGEIPQSLSKCSSLEGLYLNNNSLLGKIPRWLGNL 339
G + + L +L +L L N F G S +SL L L+ N + ++G L
Sbjct: 335 GSISFKKVALPSLSYLDLSRNALSFSGCCSYSDLGTNSLRHLDLSFNGAIIMSANFMG-L 393
Query: 340 TRLQYIIMPNNHLEGPIPVE-FCQLDSLQILDISDNNISGSLPSCFHPL-SIKQVHLSKN 397
LQ++ ++ L+ F L+ L LDIS N F L S+ + ++ N
Sbjct: 394 EELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYTNTKIDFDGIFLGLTSLNTLKMAGN 453
Query: 398 MLHGQLKRGTFFNCSSLVTLDLSYNRLNGSIPDWVDGLSQLSHLILGHNNL 448
F N ++L LDLS +L D L +L L + HNNL
Sbjct: 454 SFKDNTLSNVFANTTNLTFLDLSKCQLEQISWGVFDTLHRLQLLNMSHNNL 504
Score = 32.0 bits (71), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 35/124 (28%), Positives = 53/124 (42%), Gaps = 9/124 (7%)
Query: 539 LSGLDLSCNKLIGHIPPQIGNLTRIQTLNLSHNNLTGSIPSTFSNLKHVESLDLSNNKLN 598
L+ LDLS +L L R+Q LN+SHNNL S ++ L + +LD S N++
Sbjct: 470 LTFLDLSKCQLEQISWGVFDTLHRLQLLNMSHNNLLFLDSSHYNQLYSLSTLDCSFNRIE 529
Query: 599 GKIPHQLVELKTLEVF--SVAYNNLSGEIPEWKAQFATFNESSYEGNTFLCGLPLPICRS 656
L+ F S+A+ NL+ + F + E FL + C +
Sbjct: 530 -------TSKGILQHFPKSLAFFNLTNNSVACICEHQKFLQWVKEQKQFLVNVEQMTCAT 582
Query: 657 PATM 660
P M
Sbjct: 583 PVEM 586
Score = 29.6 bits (65), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 16/40 (40%), Positives = 27/40 (67%), Gaps = 1/40 (2%)
Query: 557 IGNLTRIQTLNLSHNNL-TGSIPSTFSNLKHVESLDLSNN 595
IG L ++ LN++HN + + +P+ FSNL ++ +DLS N
Sbjct: 119 IGQLITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYN 158
>pdb|3A79|A Chain A, Crystal Structure Of Tlr2-Tlr6-Pam2csk4 Complex
pdb|3A7B|A Chain A, Crystal Structure Of Tlr2-Streptococcus Pneumoniae
Lipoteichoic Acid Complex
pdb|3A7C|A Chain A, Crystal Structure Of Tlr2-Pe-Dtpa Complex
Length = 580
Score = 34.3 bits (77), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 61/219 (27%), Positives = 101/219 (46%), Gaps = 43/219 (19%)
Query: 235 IPSSFG-NMKFLQILDLSNNHLTGEIPEHLAVGCV--NLQFLALSNNNLQGHLFSRNFNL 291
+P SF ++K L+ LDLS N + E ++ A +LQ L LS N+L+ + L
Sbjct: 351 VPCSFSQHLKSLEFLDLSENLMVEEYLKNSACKGAWPSLQTLVLSQNHLRSMQKTGEILL 410
Query: 292 T--NLQWLQLEGNRFVGEIPQSLSKCSSLEGL-YLNNNSLLGKIPRWLGNLTRLQYIIMP 348
T NL L + N F +P S C E + +LN +S
Sbjct: 411 TLKNLTSLDISRNTF-HPMPDS---CQWPEKMRFLNLSS--------------------- 445
Query: 349 NNHLEGPIPVEFCQLDSLQILDISDNNISGSLPSCFHPLSIKQVHLSKNMLHGQLKRGTF 408
G V+ C +L++LD+S+NN+ S F P ++++++S+N L L +
Sbjct: 446 ----TGIRVVKTCIPQTLEVLDVSNNNLDSF--SLFLP-RLQELYISRNKLK-TLPDASL 497
Query: 409 FNCSSLVTLDLSYNRLNGSIPDWV-DGLSQLSHLILGHN 446
F L+ + ++ N+L S+PD + D L+ L + L N
Sbjct: 498 FPV--LLVMKIASNQLK-SVPDGIFDRLTSLQKIWLHTN 533
Score = 33.1 bits (74), Expect = 0.63, Method: Compositional matrix adjust.
Identities = 59/224 (26%), Positives = 103/224 (45%), Gaps = 19/224 (8%)
Query: 196 LRQLDVSNNNIR--GHIPVKIGDVLPSLYVFNNSMNALDGSIPSSFGNMKFLQILDLSNN 253
++ LD+S N I GH ++ L L + ++ +N ++G S G+ L+ LDLS+N
Sbjct: 54 MKSLDLSFNKITYIGHGDLRACANLQVLILKSSRINTIEGDAFYSLGS---LEHLDLSDN 110
Query: 254 HLTGEIPEHLAVGCVNLQFLALSNNNLQGHLFSRNF-NLTNLQWLQLEGNRFVGEIPQ-S 311
HL+ + +L++L L N Q + F NLTNLQ L++ EI +
Sbjct: 111 HLSS-LSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRID 169
Query: 312 LSKCSSLEGLYLNNNSLLGKIPRWLGNLTRLQYIIMPNNHL-EGPIPVEFCQ--LDSLQI 368
+ +SL L + SL + L ++ + ++ + HL E +E L S++
Sbjct: 170 FAGLTSLNELEIKALSLRNYQSQSLKSIRDIHHLTL---HLSESAFLLEIFADILSSVRY 226
Query: 369 LDISDNNISGSLPSCFHPLSIKQVH--LSKNMLHGQLKRGTFFN 410
L++ D N++ F PL + +V + K G + FN
Sbjct: 227 LELRDTNLARFQ---FSPLPVDEVSSPMKKLAFRGSVLTDESFN 267
Score = 30.0 bits (66), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 41/139 (29%), Positives = 58/139 (41%), Gaps = 28/139 (20%)
Query: 234 SIPSSFGNMKFLQILDLSNNHLTGEIPEHLAVGCVNLQFLALSNNNLQGHLFSRNFNLTN 293
SIPS G ++ LDLS N +T I C NLQ L L ++ +
Sbjct: 45 SIPS--GLTAAMKSLDLSFNKIT-YIGHGDLRACANLQVLILKSSRIN------------ 89
Query: 294 LQWLQLEGNRFVGEIPQSLSKCSSLEGLYLNNNSLLGKIPRWLGNLTRLQYI-IMPNNHL 352
+EG+ F SLE L L++N L W G L+ L+Y+ +M N +
Sbjct: 90 ----TIEGDAFYS--------LGSLEHLDLSDNHLSSLSSSWFGPLSSLKYLNLMGNPYQ 137
Query: 353 EGPIPVEFCQLDSLQILDI 371
+ F L +LQ L I
Sbjct: 138 TLGVTSLFPNLTNLQTLRI 156
>pdb|3CIG|A Chain A, Crystal Structure Of Mouse Tlr3 Ectodomain
pdb|3CIY|A Chain A, Mouse Toll-Like Receptor 3 Ectodomain Complexed With
Double-Stranded Rna
pdb|3CIY|B Chain B, Mouse Toll-Like Receptor 3 Ectodomain Complexed With
Double-Stranded Rna
Length = 697
Score = 34.3 bits (77), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 26/69 (37%), Positives = 36/69 (52%), Gaps = 2/69 (2%)
Query: 561 TRIQTLNLSHNNLTGSIPSTFSNLK--HVESLDLSNNKLNGKIPHQLVELKTLEVFSVAY 618
T IQ L+L++N L + STFS LK ++ LDLS N L+ L +L S+ Y
Sbjct: 222 TSIQNLSLANNQLLATSESTFSGLKWTNLTQLDLSYNNLHDVGNGSFSYLPSLRYLSLEY 281
Query: 619 NNLSGEIPE 627
NN+ P
Sbjct: 282 NNIQRLSPR 290
Score = 33.5 bits (75), Expect = 0.47, Method: Compositional matrix adjust.
Identities = 32/103 (31%), Positives = 45/103 (43%), Gaps = 2/103 (1%)
Query: 347 MPNNHLEGPIPVEFCQLDSLQILDISDNNISGSLPSCFHPLSI-KQVHLSKNMLHGQLKR 405
+ +N L P F + L ILD N+IS P L + K ++L N L Q+
Sbjct: 32 LTHNQLRRLPPTNFTRYSQLAILDAGFNSISKLEPELCQILPLLKVLNLQHNEL-SQISD 90
Query: 406 GTFFNCSSLVTLDLSYNRLNGSIPDWVDGLSQLSHLILGHNNL 448
TF C++L LDL N ++ + L L L HN L
Sbjct: 91 QTFVFCTNLTELDLMSNSIHKIKSNPFKNQKNLIKLDLSHNGL 133
Score = 30.8 bits (68), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 24/78 (30%), Positives = 38/78 (48%), Gaps = 3/78 (3%)
Query: 546 CNKL-IGHIPPQIGNLTRIQTLNLSHNNLTGSIPSTFSNLKHVESLDLSNNKLNGKIPHQ 604
C+ L + HIP + + I LNL+HN L P+ F+ + LD N ++ P
Sbjct: 11 CSHLKLTHIPDDLP--SNITVLNLTHNQLRRLPPTNFTRYSQLAILDAGFNSISKLEPEL 68
Query: 605 LVELKTLEVFSVAYNNLS 622
L L+V ++ +N LS
Sbjct: 69 CQILPLLKVLNLQHNELS 86
>pdb|2ID5|A Chain A, Crystal Structure Of The Lingo-1 Ectodomain
pdb|2ID5|B Chain B, Crystal Structure Of The Lingo-1 Ectodomain
pdb|2ID5|C Chain C, Crystal Structure Of The Lingo-1 Ectodomain
pdb|2ID5|D Chain D, Crystal Structure Of The Lingo-1 Ectodomain
Length = 477
Score = 33.9 bits (76), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 59/230 (25%), Positives = 99/230 (43%), Gaps = 10/230 (4%)
Query: 197 RQLDVSNNNIRGHIPVKIGDVLPSLYVFNNSMNALDGSIPSSFGNMKFLQILDLSNNHLT 256
R LD+ N I+ + P L + N + P +F N+ L+ L L +N L
Sbjct: 35 RLLDLGKNRIKTLNQDEFAS-FPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSNRLK 93
Query: 257 GEIPEHLAVGCVNLQFLALSNNNLQGHLFSRNFNLTNLQWLQLEGNRFVGEIPQSLSKCS 316
IP + G NL L +S N + L +L NL+ L++ N V ++ S +
Sbjct: 94 -LIPLGVFTGLSNLTKLDISENKIVILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLN 152
Query: 317 SLEGLYLNNNSLLGKIPRWLGNLTRLQYIIMPNNHLEGPIPVEFCQLDSLQILDISD-NN 375
SLE L L +L L +L L + + + ++ F +L L++L+IS
Sbjct: 153 SLEQLTLEKCNLTSIPTEALSHLHGLIVLRLRHLNINAIRDYSFKRLYRLKVLEISHWPY 212
Query: 376 ISGSLPSCFHPLSIKQVHLSKNMLHGQLKRGTFFNCSSLVT---LDLSYN 422
+ P+C + L++ + ++ H L + LV L+LSYN
Sbjct: 213 LDTMTPNCLYGLNLTSLSIT----HCNLTAVPYLAVRHLVYLRFLNLSYN 258
Score = 32.7 bits (73), Expect = 0.63, Method: Compositional matrix adjust.
Identities = 20/61 (32%), Positives = 34/61 (55%), Gaps = 1/61 (1%)
Query: 18 LVHLQELYIASNDLRGSLPWCMANMTSLRILDVSSNQLTGSISSSPLVHLTSIEELMLSN 77
L+ LQE+ + L P+ + LR+L+VS NQLT ++ S + ++E L+L +
Sbjct: 271 LLRLQEIQLVGGQLAVVEPYAFRGLNYLRVLNVSGNQLT-TLEESVFHSVGNLETLILDS 329
Query: 78 N 78
N
Sbjct: 330 N 330
Score = 32.3 bits (72), Expect = 0.83, Method: Compositional matrix adjust.
Identities = 34/136 (25%), Positives = 63/136 (46%), Gaps = 4/136 (2%)
Query: 314 KCSSLEGLYLNNNSLLGKIPRWLGNLTRLQYIIMPNNHLEGPIPVEFCQLDSLQILDISD 373
+CS+ + L + +P + TRL + + N ++ EF L+ L++++
Sbjct: 8 ECSAQDRAVLCHRKRFVAVPEGIPTETRL--LDLGKNRIKTLNQDEFASFPHLEELELNE 65
Query: 374 NNISGSLPSCFHPL-SIKQVHLSKNMLHGQLKRGTFFNCSSLVTLDLSYNRLNGSIPDWV 432
N +S P F+ L +++ + L N L + G F S+L LD+S N++ +
Sbjct: 66 NIVSAVEPGAFNNLFNLRTLGLRSNRLK-LIPLGVFTGLSNLTKLDISENKIVILLDYMF 124
Query: 433 DGLSQLSHLILGHNNL 448
L L L +G N+L
Sbjct: 125 QDLYNLKSLEVGDNDL 140
Score = 29.6 bits (65), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 24/83 (28%), Positives = 39/83 (46%)
Query: 539 LSGLDLSCNKLIGHIPPQIGNLTRIQTLNLSHNNLTGSIPSTFSNLKHVESLDLSNNKLN 598
L L+L+ N + P NL ++TL L N L F+ L ++ LD+S NK+
Sbjct: 58 LEELELNENIVSAVEPGAFNNLFNLRTLGLRSNRLKLIPLGVFTGLSNLTKLDISENKIV 117
Query: 599 GKIPHQLVELKTLEVFSVAYNNL 621
+ + +L L+ V N+L
Sbjct: 118 ILLDYMFQDLYNLKSLEVGDNDL 140
>pdb|1W8A|A Chain A, Third Lrr Domain Of Drosophila Slit
Length = 192
Score = 33.5 bits (75), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 20/69 (28%), Positives = 31/69 (44%)
Query: 558 GNLTRIQTLNLSHNNLTGSIPSTFSNLKHVESLDLSNNKLNGKIPHQLVELKTLEVFSVA 617
G L + L L N LTG P+ F H++ L L NK+ + L L+ ++
Sbjct: 51 GRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGENKIKEISNKMFLGLHQLKTLNLY 110
Query: 618 YNNLSGEIP 626
N +S +P
Sbjct: 111 DNQISCVMP 119
Score = 32.0 bits (71), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 21/64 (32%), Positives = 31/64 (48%)
Query: 386 PLSIKQVHLSKNMLHGQLKRGTFFNCSSLVTLDLSYNRLNGSIPDWVDGLSQLSHLILGH 445
PL ++ L+ N L G F LV L+L N+L G P+ +G S + L LG
Sbjct: 28 PLHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGE 87
Query: 446 NNLE 449
N ++
Sbjct: 88 NKIK 91
>pdb|2O6S|A Chain A, Structural Diversity Of The Hagfish Variable Lymphocyte
Receptors B59
pdb|2O6S|B Chain B, Structural Diversity Of The Hagfish Variable Lymphocyte
Receptors B59
Length = 208
Score = 33.5 bits (75), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 34/84 (40%), Positives = 47/84 (55%), Gaps = 6/84 (7%)
Query: 369 LDISDNNISGSLP-SCFHPL-SIKQVHLSKNMLHGQLKRGTFFNCSSLVTLDLSYNRLNG 426
LD+ N++ SLP F L S+ Q++L N L L G F +SL L+LS N+L
Sbjct: 33 LDLETNSLK-SLPNGVFDELTSLTQLYLGGNKLQ-SLPNGVFNKLTSLTYLNLSTNQLQ- 89
Query: 427 SIPDWV-DGLSQLSHLILGHNNLE 449
S+P+ V D L+QL L L N L+
Sbjct: 90 SLPNGVFDKLTQLKELALNTNQLQ 113
Score = 32.3 bits (72), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 26/65 (40%), Positives = 39/65 (60%), Gaps = 3/65 (4%)
Query: 18 LVHLQELYIASNDLRGSLPWCMAN-MTSLRILDVSSNQLTGSISSSPLVHLTSIEELMLS 76
L L +LY+ N L+ SLP + N +TSL L++S+NQL S+ + LT ++EL L+
Sbjct: 51 LTSLTQLYLGGNKLQ-SLPNGVFNKLTSLTYLNLSTNQLQ-SLPNGVFDKLTQLKELALN 108
Query: 77 NNYFQ 81
N Q
Sbjct: 109 TNQLQ 113
Score = 29.6 bits (65), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 39/109 (35%), Positives = 55/109 (50%), Gaps = 6/109 (5%)
Query: 344 YIIMPNNHLEGPIPVEFCQLDSLQILDISDNNISGSLP-SCFHPL-SIKQVHLSKNMLHG 401
Y+ + N L+ F +L SL L + N + SLP F+ L S+ ++LS N L
Sbjct: 32 YLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQ-SLPNGVFNKLTSLTYLNLSTNQLQ- 89
Query: 402 QLKRGTFFNCSSLVTLDLSYNRLNGSIPDWV-DGLSQLSHLILGHNNLE 449
L G F + L L L+ N+L S+PD V D L+QL L L N L+
Sbjct: 90 SLPNGVFDKLTQLKELALNTNQLQ-SLPDGVFDKLTQLKDLRLYQNQLK 137
>pdb|3ZYI|A Chain A, Netring2 In Complex With Ngl2
Length = 452
Score = 33.1 bits (74), Expect = 0.49, Method: Compositional matrix adjust.
Identities = 58/237 (24%), Positives = 95/237 (40%), Gaps = 34/237 (14%)
Query: 235 IPSSFGNMKFLQILDLSNNHLTGEIPEHLAVGCVNLQFLALSNNNLQGHLFSRNFNLTNL 294
IPS N ++L +++ + + + HL +L+ L L N+++ L +L
Sbjct: 73 IPS---NTRYLNLMENNIQMIQADTFRHLH----HLEVLQLGRNSIRQIEVGAFNGLASL 125
Query: 295 QWLQLEGNRFVGEIPQSLSKCSSLEGLYLNNNSL-------LGKIPRW----LGNLTRLQ 343
L+L N + S L L+L NN + ++P LG L +L+
Sbjct: 126 NTLELFDNWLTVIPSGAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLMRLDLGELKKLE 185
Query: 344 YIIMPNNHLEGPIPVEFCQLD--------------SLQILDISDNNISGSLPSCFHPLSI 389
YI EG +++ L L+ L++S N+ P FH LS
Sbjct: 186 YI--SEGAFEGLFNLKYLNLGMCNIKDMPNLTPLVGLEELEMSGNHFPEIRPGSFHGLSS 243
Query: 390 KQVHLSKNMLHGQLKRGTFFNCSSLVTLDLSYNRLNGSIPDWVDGLSQLSHLILGHN 446
+ N ++R F +SLV L+L++N L+ D L L L L HN
Sbjct: 244 LKKLWVMNSQVSLIERNAFDGLASLVELNLAHNNLSSLPHDLFTPLRYLVELHLHHN 300
>pdb|2R9U|A Chain A, Crystal Structure Of Lamprey Variable Lymphocyte Receptor
2913 Ectodomain
pdb|2R9U|B Chain B, Crystal Structure Of Lamprey Variable Lymphocyte Receptor
2913 Ectodomain
pdb|2R9U|C Chain C, Crystal Structure Of Lamprey Variable Lymphocyte Receptor
2913 Ectodomain
pdb|2R9U|D Chain D, Crystal Structure Of Lamprey Variable Lymphocyte Receptor
2913 Ectodomain
Length = 174
Score = 32.7 bits (73), Expect = 0.64, Method: Composition-based stats.
Identities = 28/87 (32%), Positives = 46/87 (52%), Gaps = 4/87 (4%)
Query: 367 QILDISDNNISGSLPSCF-HPLSIKQVHLSKNMLHGQLKRGTFFNCSSLVTLDLSYNRLN 425
Q L +++N I+ P F H ++++Q++ + N L + G F + L LDL+ N L
Sbjct: 36 QRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTA-IPTGVFDKLTQLTQLDLNDNHLK 94
Query: 426 GSIPDWV-DGLSQLSHLILGHNNLEGE 451
SIP D L L+H+ L +N + E
Sbjct: 95 -SIPRGAFDNLKSLTHIYLYNNPWDCE 120
Score = 32.0 bits (71), Expect = 1.4, Method: Composition-based stats.
Identities = 22/61 (36%), Positives = 30/61 (49%), Gaps = 1/61 (1%)
Query: 18 LVHLQELYIASNDLRGSLPWCMANMTSLRILDVSSNQLTGSISSSPLVHLTSIEELMLSN 77
LV+LQ+LY SN L +T L LD++ N L SI +L S+ + L N
Sbjct: 56 LVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDNHLK-SIPRGAFDNLKSLTHIYLYN 114
Query: 78 N 78
N
Sbjct: 115 N 115
Score = 30.0 bits (66), Expect = 4.3, Method: Composition-based stats.
Identities = 23/78 (29%), Positives = 36/78 (46%), Gaps = 1/78 (1%)
Query: 321 LYLNNNSLLGKIPRWLGNLTRLQYIIMPNNHLEGPIPVEFCQLDSLQILDISDNNISGSL 380
L+LNNN + P +L LQ + +N L F +L L LD++DN++
Sbjct: 38 LWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDNHLKSIP 97
Query: 381 PSCFHPL-SIKQVHLSKN 397
F L S+ ++L N
Sbjct: 98 RGAFDNLKSLTHIYLYNN 115
>pdb|1SQ0|B Chain B, Crystal Structure Of The Complex Of The Wild-Type Von
Willebrand Factor A1 Domain And Glycoprotein Ib Alpha At
2.6 Angstrom Resolution
Length = 288
Score = 32.7 bits (73), Expect = 0.65, Method: Compositional matrix adjust.
Identities = 42/152 (27%), Positives = 65/152 (42%), Gaps = 20/152 (13%)
Query: 1 MSSCEVNGVVRSQGLCSLVHLQELYIASNDLRGSLPWCMANMTSLRILDVSSNQLTGSIS 60
++ +V+G + G L H N L+ SLP + +L +LDVS N+LT S+
Sbjct: 67 LTKLQVDGTLPVLGTLDLSH--------NQLQ-SLPLLGQTLPALTVLDVSFNRLT-SLP 116
Query: 61 SSPLVHLTSIEELMLSNNYFQI--PISLEPLFNYSRLKIFNAENNEIKAEITESHSLIAP 118
L L ++EL L N + P L P +L + N + E+ A L+
Sbjct: 117 LGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNDLTELPA------GLLNG 170
Query: 119 KFQLNTLSLSSNYGDGFIFPKFLYHQHDLEYV 150
L+TL L N + PK + H L +
Sbjct: 171 LENLDTLLLQEN--SLYTIPKGFFGSHLLPFA 200
Score = 30.4 bits (67), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 36/113 (31%), Positives = 45/113 (39%), Gaps = 2/113 (1%)
Query: 240 GNMKFLQILDLSNNHLTGEIPEHLAVGCVNLQFLALSNNNLQGHLFSRNFNLTNLQWLQL 299
G + L LDLS+N L +P L L L +S N L L LQ L L
Sbjct: 74 GTLPVLGTLDLSHNQLQS-LP-LLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYL 131
Query: 300 EGNRFVGEIPQSLSKCSSLEGLYLNNNSLLGKIPRWLGNLTRLQYIIMPNNHL 352
+GN P L+ LE L L NN L L L L +++ N L
Sbjct: 132 KGNELKTLPPGLLTPTPKLEKLSLANNDLTELPAGLLNGLENLDTLLLQENSL 184
Score = 30.0 bits (66), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 27/90 (30%), Positives = 43/90 (47%), Gaps = 2/90 (2%)
Query: 533 GKVLSLLSGLDLSCNKLIGHIPPQIGNLTRIQTLNLSHNNLTGSIPSTFSNLKHVESLDL 592
G+ L L+ LD+S N+L + L +Q L L N L P + +E L L
Sbjct: 96 GQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSL 155
Query: 593 SNNKLNGKIPHQLVE-LKTLEVFSVAYNNL 621
+NN L ++P L+ L+ L+ + N+L
Sbjct: 156 ANNDLT-ELPAGLLNGLENLDTLLLQENSL 184
>pdb|1M10|B Chain B, Crystal Structure Of The Complex Of Glycoprotein Ib Alpha
And The Von Willebrand Factor A1 Domain
Length = 290
Score = 32.7 bits (73), Expect = 0.65, Method: Compositional matrix adjust.
Identities = 42/152 (27%), Positives = 65/152 (42%), Gaps = 20/152 (13%)
Query: 1 MSSCEVNGVVRSQGLCSLVHLQELYIASNDLRGSLPWCMANMTSLRILDVSSNQLTGSIS 60
++ +V+G + G L H N L+ SLP + +L +LDVS N+LT S+
Sbjct: 67 LTKLQVDGTLPVLGTLDLSH--------NQLQ-SLPLLGQTLPALTVLDVSFNRLT-SLP 116
Query: 61 SSPLVHLTSIEELMLSNNYFQI--PISLEPLFNYSRLKIFNAENNEIKAEITESHSLIAP 118
L L ++EL L N + P L P +L + N + E+ A L+
Sbjct: 117 LGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNQLTELPA------GLLNG 170
Query: 119 KFQLNTLSLSSNYGDGFIFPKFLYHQHDLEYV 150
L+TL L N + PK + H L +
Sbjct: 171 LENLDTLLLQEN--SLYTIPKGFFGSHLLPFA 200
Score = 30.4 bits (67), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 27/90 (30%), Positives = 44/90 (48%), Gaps = 2/90 (2%)
Query: 533 GKVLSLLSGLDLSCNKLIGHIPPQIGNLTRIQTLNLSHNNLTGSIPSTFSNLKHVESLDL 592
G+ L L+ LD+S N+L + L +Q L L N L P + +E L L
Sbjct: 96 GQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSL 155
Query: 593 SNNKLNGKIPHQLVE-LKTLEVFSVAYNNL 621
+NN+L ++P L+ L+ L+ + N+L
Sbjct: 156 ANNQLT-ELPAGLLNGLENLDTLLLQENSL 184
Score = 30.0 bits (66), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 36/113 (31%), Positives = 45/113 (39%), Gaps = 2/113 (1%)
Query: 240 GNMKFLQILDLSNNHLTGEIPEHLAVGCVNLQFLALSNNNLQGHLFSRNFNLTNLQWLQL 299
G + L LDLS+N L +P L L L +S N L L LQ L L
Sbjct: 74 GTLPVLGTLDLSHNQLQS-LP-LLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYL 131
Query: 300 EGNRFVGEIPQSLSKCSSLEGLYLNNNSLLGKIPRWLGNLTRLQYIIMPNNHL 352
+GN P L+ LE L L NN L L L L +++ N L
Sbjct: 132 KGNELKTLPPGLLTPTPKLEKLSLANNQLTELPAGLLNGLENLDTLLLQENSL 184
>pdb|3RG1|A Chain A, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|E Chain E, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|I Chain I, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|M Chain M, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|B Chain B, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|F Chain F, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|J Chain J, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|N Chain N, Crystal Structure Of The Rp105MD-1 Complex
Length = 612
Score = 32.7 bits (73), Expect = 0.66, Method: Compositional matrix adjust.
Identities = 27/94 (28%), Positives = 42/94 (44%), Gaps = 1/94 (1%)
Query: 556 QIGNLTRIQTLNLSHNNLTGSIPSTFSNLKHVESLDLSNNKLNGKIPHQLVE-LKTLEVF 614
Q+ NL +Q LNLS+N G F +E LD++ L+ K PH + L L V
Sbjct: 370 QLKNLRHLQYLNLSYNEPLGLEDQAFKECPQLELLDVAFTHLHVKAPHSPFQNLHLLRVL 429
Query: 615 SVAYNNLSGEIPEWKAQFATFNESSYEGNTFLCG 648
++++ L A + +GN+F G
Sbjct: 430 NLSHCLLDTSNQHLLAGLQDLRHLNLQGNSFQDG 463
>pdb|3L1W|A Chain A, The Crystal Structure Of A Functionally Unknown Conserved
Protein From Enterococcus Faecalis V583
pdb|3L1W|B Chain B, The Crystal Structure Of A Functionally Unknown Conserved
Protein From Enterococcus Faecalis V583
pdb|3L1W|C Chain C, The Crystal Structure Of A Functionally Unknown Conserved
Protein From Enterococcus Faecalis V583
pdb|3L1W|D Chain D, The Crystal Structure Of A Functionally Unknown Conserved
Protein From Enterococcus Faecalis V583
pdb|3L1W|E Chain E, The Crystal Structure Of A Functionally Unknown Conserved
Protein From Enterococcus Faecalis V583
pdb|3L1W|F Chain F, The Crystal Structure Of A Functionally Unknown Conserved
Protein From Enterococcus Faecalis V583
Length = 257
Score = 32.7 bits (73), Expect = 0.66, Method: Compositional matrix adjust.
Identities = 26/89 (29%), Positives = 42/89 (47%), Gaps = 17/89 (19%)
Query: 98 FNAENNEIKAEITESHSLIAPKFQLNTLSLSSNYGDGFIFPKFLYHQHDLEYVDLSHIKM 157
FNAE+ E E H L+ KFQ ++ +L+++YG F F Y + E ++ +I +
Sbjct: 167 FNAESGE------EVHQLVQKKFQ-DSKNLATHYGPRGTFQNFTYTKPWAELEEIDYIYV 219
Query: 158 NGEFPNWLLENNTKLETLFLVNDSLAGPF 186
G W ++ L DS+ G F
Sbjct: 220 KG----WQVQQTASL------TDSIDGRF 238
>pdb|1M0Z|A Chain A, Crystal Structure Of The Von Willebrand Factor Binding
Domain Of Glycoprotein Ib Alpha
pdb|1M0Z|B Chain B, Crystal Structure Of The Von Willebrand Factor Binding
Domain Of Glycoprotein Ib Alpha
Length = 290
Score = 32.7 bits (73), Expect = 0.68, Method: Compositional matrix adjust.
Identities = 42/152 (27%), Positives = 65/152 (42%), Gaps = 20/152 (13%)
Query: 1 MSSCEVNGVVRSQGLCSLVHLQELYIASNDLRGSLPWCMANMTSLRILDVSSNQLTGSIS 60
++ +V+G + G L H N L+ SLP + +L +LDVS N+LT S+
Sbjct: 67 LTKLQVDGTLPVLGTLDLSH--------NQLQ-SLPLLGQTLPALTVLDVSFNRLT-SLP 116
Query: 61 SSPLVHLTSIEELMLSNNYFQI--PISLEPLFNYSRLKIFNAENNEIKAEITESHSLIAP 118
L L ++EL L N + P L P +L + N + E+ A L+
Sbjct: 117 LGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNQLTELPA------GLLNG 170
Query: 119 KFQLNTLSLSSNYGDGFIFPKFLYHQHDLEYV 150
L+TL L N + PK + H L +
Sbjct: 171 LENLDTLLLQEN--SLYTIPKGFFGSHLLPFA 200
Score = 30.4 bits (67), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 27/90 (30%), Positives = 44/90 (48%), Gaps = 2/90 (2%)
Query: 533 GKVLSLLSGLDLSCNKLIGHIPPQIGNLTRIQTLNLSHNNLTGSIPSTFSNLKHVESLDL 592
G+ L L+ LD+S N+L + L +Q L L N L P + +E L L
Sbjct: 96 GQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSL 155
Query: 593 SNNKLNGKIPHQLVE-LKTLEVFSVAYNNL 621
+NN+L ++P L+ L+ L+ + N+L
Sbjct: 156 ANNQLT-ELPAGLLNGLENLDTLLLQENSL 184
Score = 30.0 bits (66), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 36/113 (31%), Positives = 45/113 (39%), Gaps = 2/113 (1%)
Query: 240 GNMKFLQILDLSNNHLTGEIPEHLAVGCVNLQFLALSNNNLQGHLFSRNFNLTNLQWLQL 299
G + L LDLS+N L +P L L L +S N L L LQ L L
Sbjct: 74 GTLPVLGTLDLSHNQLQS-LP-LLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYL 131
Query: 300 EGNRFVGEIPQSLSKCSSLEGLYLNNNSLLGKIPRWLGNLTRLQYIIMPNNHL 352
+GN P L+ LE L L NN L L L L +++ N L
Sbjct: 132 KGNELKTLPPGLLTPTPKLEKLSLANNQLTELPAGLLNGLENLDTLLLQENSL 184
>pdb|2Z7X|B Chain B, Crystal Structure Of The Tlr1-Tlr2 Heterodimer Induced By
Binding Of A Tri-Acylated Lipopeptide
Length = 520
Score = 32.7 bits (73), Expect = 0.71, Method: Compositional matrix adjust.
Identities = 47/188 (25%), Positives = 73/188 (38%), Gaps = 54/188 (28%)
Query: 272 FLALSNNNLQGHLFSRNFNLTNLQWLQLEGNRFVGEI---PQSL---------------- 312
+ ++SN LQG L R+F+ + L ++ V ++ PQS
Sbjct: 251 YFSISNVKLQGQLDFRDFDYSGTSLKALSIHQVVSDVFGFPQSYIYEIFSNMNIKNFTVS 310
Query: 313 ----------SKCSSLEGLYLNNNSLLGKIPRWLGNLTRLQYIIMPNNHLE--GPIPVEF 360
SK S L +NN L + G+LT L+ +I+ N L+ I
Sbjct: 311 GTRMVHMLCPSKISPFLHLDFSNNLLTDTVFENCGHLTELETLILQMNQLKELSKIAEMT 370
Query: 361 CQLDSLQILDISDNNISGSLPSCFHPLSIKQVHLSKNMLHGQLKRGTFFNCSSLVTLDLS 420
Q+ SLQ LDIS N++S K+G SL++L++S
Sbjct: 371 TQMKSLQQLDISQNSVSY-----------------------DEKKGDCSWTKSLLSLNMS 407
Query: 421 YNRLNGSI 428
N L +I
Sbjct: 408 SNILTDTI 415
Score = 30.4 bits (67), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 23/65 (35%), Positives = 37/65 (56%)
Query: 557 IGNLTRIQTLNLSHNNLTGSIPSTFSNLKHVESLDLSNNKLNGKIPHQLVELKTLEVFSV 616
I +L++++ L +SHN + S F + +E LDLS+NKL H V LK L++
Sbjct: 41 ILSLSKLRILIISHNRIQYLDISVFKFNQELEYLDLSHNKLVKISCHPTVNLKHLDLSFN 100
Query: 617 AYNNL 621
A++ L
Sbjct: 101 AFDAL 105
Score = 30.0 bits (66), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 20/62 (32%), Positives = 28/62 (45%), Gaps = 1/62 (1%)
Query: 542 LDLSCNKLIGHIPPQIGNLTRIQTLNLSHNNLTGSIPSTFSNLKHVESLDLSNNKLNGKI 601
LDL NK I IP Q+ L +Q LN++ N L F L ++ + L N +
Sbjct: 426 LDLHSNK-IKSIPKQVVKLEALQELNVASNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSC 484
Query: 602 PH 603
P
Sbjct: 485 PR 486
>pdb|3P72|A Chain A, Structure Of Platelet Glycoprotein 1b Alpha With A Bound
Peptide Inhibitor
Length = 269
Score = 32.7 bits (73), Expect = 0.79, Method: Compositional matrix adjust.
Identities = 41/152 (26%), Positives = 64/152 (42%), Gaps = 20/152 (13%)
Query: 1 MSSCEVNGVVRSQGLCSLVHLQELYIASNDLRGSLPWCMANMTSLRILDVSSNQLTGSIS 60
++ +V+G + G L H N L+ SLP + +L +LDVS N+LT S+
Sbjct: 67 LTKLQVDGTLPVLGTLDLSH--------NQLQ-SLPLLGQTLPALTVLDVSFNRLT-SLP 116
Query: 61 SSPLVHLTSIEELMLSNNYFQI--PISLEPLFNYSRLKIFNAENNEIKAEITESHSLIAP 118
L L ++EL L N + P L P +L + N + E+ A +
Sbjct: 117 LGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNQLTELPAGLLNGLE---- 172
Query: 119 KFQLNTLSLSSNYGDGFIFPKFLYHQHDLEYV 150
L+TL L N + PK + H L +
Sbjct: 173 --NLDTLLLQEN--SLYTIPKGFFGSHLLPFA 200
Score = 30.4 bits (67), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 33/116 (28%), Positives = 53/116 (45%), Gaps = 3/116 (2%)
Query: 533 GKVLSLLSGLDLSCNKLIGHIPPQIGNLTRIQTLNLSHNNLTGSIPSTFSNLKHVESLDL 592
G+ L L+ LD+S N+L + L +Q L L N L P + +E L L
Sbjct: 96 GQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSL 155
Query: 593 SNNKLNGKIPHQLVE-LKTLEVFSVAYNNLSGEIPEWKAQFATFNESSYEGNTFLC 647
+NN+L ++P L+ L+ L+ + N+L IP+ + GN +LC
Sbjct: 156 ANNQLT-ELPAGLLNGLENLDTLLLQENSLY-TIPKGFFGSHLLPFAFLHGNPWLC 209
Score = 29.3 bits (64), Expect = 8.0, Method: Compositional matrix adjust.
Identities = 36/113 (31%), Positives = 45/113 (39%), Gaps = 2/113 (1%)
Query: 240 GNMKFLQILDLSNNHLTGEIPEHLAVGCVNLQFLALSNNNLQGHLFSRNFNLTNLQWLQL 299
G + L LDLS+N L +P L L L +S N L L LQ L L
Sbjct: 74 GTLPVLGTLDLSHNQLQS-LP-LLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYL 131
Query: 300 EGNRFVGEIPQSLSKCSSLEGLYLNNNSLLGKIPRWLGNLTRLQYIIMPNNHL 352
+GN P L+ LE L L NN L L L L +++ N L
Sbjct: 132 KGNELKTLPPGLLTPTPKLEKLSLANNQLTELPAGLLNGLENLDTLLLQENSL 184
>pdb|1U0N|D Chain D, The Ternary Von Willebrand Factor A1-Glycoprotein Ibalpha-
Botrocetin Complex
Length = 265
Score = 32.7 bits (73), Expect = 0.80, Method: Compositional matrix adjust.
Identities = 41/152 (26%), Positives = 64/152 (42%), Gaps = 20/152 (13%)
Query: 1 MSSCEVNGVVRSQGLCSLVHLQELYIASNDLRGSLPWCMANMTSLRILDVSSNQLTGSIS 60
++ +V+G + G L H N L+ SLP + +L +LDVS N+LT S+
Sbjct: 67 LTKLQVDGTLPVLGTLDLSH--------NQLQ-SLPLLGQTLPALTVLDVSFNRLT-SLP 116
Query: 61 SSPLVHLTSIEELMLSNNYFQI--PISLEPLFNYSRLKIFNAENNEIKAEITESHSLIAP 118
L L ++EL L N + P L P +L + N + E+ A +
Sbjct: 117 LGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNQLTELPAGLLNGLE---- 172
Query: 119 KFQLNTLSLSSNYGDGFIFPKFLYHQHDLEYV 150
L+TL L N + PK + H L +
Sbjct: 173 --NLDTLLLQEN--SLYTIPKGFFGSHLLPFA 200
Score = 30.0 bits (66), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 27/90 (30%), Positives = 44/90 (48%), Gaps = 2/90 (2%)
Query: 533 GKVLSLLSGLDLSCNKLIGHIPPQIGNLTRIQTLNLSHNNLTGSIPSTFSNLKHVESLDL 592
G+ L L+ LD+S N+L + L +Q L L N L P + +E L L
Sbjct: 96 GQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSL 155
Query: 593 SNNKLNGKIPHQLVE-LKTLEVFSVAYNNL 621
+NN+L ++P L+ L+ L+ + N+L
Sbjct: 156 ANNQLT-ELPAGLLNGLENLDTLLLQENSL 184
Score = 29.3 bits (64), Expect = 7.7, Method: Compositional matrix adjust.
Identities = 36/113 (31%), Positives = 45/113 (39%), Gaps = 2/113 (1%)
Query: 240 GNMKFLQILDLSNNHLTGEIPEHLAVGCVNLQFLALSNNNLQGHLFSRNFNLTNLQWLQL 299
G + L LDLS+N L +P L L L +S N L L LQ L L
Sbjct: 74 GTLPVLGTLDLSHNQLQS-LP-LLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYL 131
Query: 300 EGNRFVGEIPQSLSKCSSLEGLYLNNNSLLGKIPRWLGNLTRLQYIIMPNNHL 352
+GN P L+ LE L L NN L L L L +++ N L
Sbjct: 132 KGNELKTLPPGLLTPTPKLEKLSLANNQLTELPAGLLNGLENLDTLLLQENSL 184
>pdb|4ECO|A Chain A, Crystal Structure Of A Hypothetical Protein (Bacegg_03329)
From Bacteroides Eggerthii Dsm 20697 At 2.70 A
Resolution
pdb|4ECO|B Chain B, Crystal Structure Of A Hypothetical Protein (Bacegg_03329)
From Bacteroides Eggerthii Dsm 20697 At 2.70 A
Resolution
Length = 636
Score = 32.3 bits (72), Expect = 0.85, Method: Compositional matrix adjust.
Identities = 26/77 (33%), Positives = 42/77 (54%), Gaps = 6/77 (7%)
Query: 562 RIQTLNLSHNNL-TGSIPSTFSNLKHVESLDLSNNKLNGKIPHQLVELKTLEVFSVAYNN 620
+IQ + + +NNL T + ++ K + L+ N+L GK+P E+K L ++AYN
Sbjct: 306 KIQIIYIGYNNLKTFPVETSLQKXKKLGXLECLYNQLEGKLPAFGSEIK-LASLNLAYNQ 364
Query: 621 LSGEIPEWKAQFATFNE 637
++ EIP A F F E
Sbjct: 365 IT-EIP---ANFCGFTE 377
Score = 32.0 bits (71), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 28/87 (32%), Positives = 50/87 (57%), Gaps = 8/87 (9%)
Query: 539 LSGLDLSCNKLIGHIPPQIGNLTRIQTLNLSHNNLTGSIPSTFSNL-KHVESLDLSNNKL 597
L L+ N+L G +P G+ ++ +LNL++N +T IP+ F + VE+L ++NKL
Sbjct: 332 LGXLECLYNQLEGKLPA-FGSEIKLASLNLAYNQIT-EIPANFCGFTEQVENLSFAHNKL 389
Query: 598 NGKIPHQLVELKTLEVFSV---AYNNL 621
IP+ + + K++ V S +YN +
Sbjct: 390 K-YIPN-IFDAKSVSVXSAIDFSYNEI 414
>pdb|4FCG|A Chain A, Structure Of The Leucine-Rich Repeat Domain Of The Type
Iii Effector Xcv3220 (Xopl)
Length = 328
Score = 32.3 bits (72), Expect = 0.90, Method: Compositional matrix adjust.
Identities = 50/194 (25%), Positives = 81/194 (41%), Gaps = 14/194 (7%)
Query: 218 LPSLYVFNNSMNALDGSIPSSFGNMKFLQILDLSNNHLTGEIPEHLAV--------GCVN 269
L +L + N + AL P+S ++ L+ L + E+PE LA G VN
Sbjct: 129 LETLTLARNPLRAL----PASIASLNRLRELSIRACPELTELPEPLASTDASGEHQGLVN 184
Query: 270 LQFLALSNNNLQGHLFSRNFNLTNLQWLQLEGNRFVGEIPQSLSKCSSLEGLYLNNNSLL 329
LQ L L ++ L + NL NL+ L++ N + + ++ LE L L + L
Sbjct: 185 LQSLRLEWTGIRS-LPASIANLQNLKSLKIR-NSPLSALGPAIHHLPKLEELDLRGCTAL 242
Query: 330 GKIPRWLGNLTRLQYIIMPNNHLEGPIPVEFCQLDSLQILDISDNNISGSLPSCFHPLSI 389
P G L+ +I+ + +P++ +L L+ LD+ LPS L
Sbjct: 243 RNYPPIFGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLPSLIAQLPA 302
Query: 390 KQVHLSKNMLHGQL 403
+ L L QL
Sbjct: 303 NCIILVPPHLQAQL 316
>pdb|2J04|B Chain B, The Tau60-Tau91 Subcomplex Of Yeast Transcription Factor
Iiic
pdb|2J04|D Chain D, The Tau60-Tau91 Subcomplex Of Yeast Transcription Factor
Iiic
Length = 524
Score = 32.3 bits (72), Expect = 0.92, Method: Compositional matrix adjust.
Identities = 21/77 (27%), Positives = 40/77 (51%), Gaps = 3/77 (3%)
Query: 237 SSFGNMKFLQILDLSNNHLTGEIPEHLAVGCVNLQFLALSNNNLQGHLFSRNFNLTNLQW 296
+ F NM L+ L L GE+ ++ G ++F L+N +G +++ +T++ W
Sbjct: 85 TEFENMIKLRTKRL--KLLIGEVDAEVSTG-DKIEFPVLANGKRRGFIYNVGGLVTDIAW 141
Query: 297 LQLEGNRFVGEIPQSLS 313
L +E N +G+ Q L+
Sbjct: 142 LNIEENTDIGKDIQYLA 158
>pdb|3J0A|A Chain A, Homology Model Of Human Toll-Like Receptor 5 Fitted Into
An Electron Microscopy Single Particle Reconstruction
pdb|3J0A|B Chain B, Homology Model Of Human Toll-Like Receptor 5 Fitted Into
An Electron Microscopy Single Particle Reconstruction
Length = 844
Score = 32.0 bits (71), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 24/74 (32%), Positives = 40/74 (54%), Gaps = 4/74 (5%)
Query: 559 NLTRIQTLNLSHNNLTG-SIPSTFSNLKHVESLDLSNNKLNGKIPHQLVEL--KTLEVFS 615
NL + L+LS N + + +F L ++S+D S+N++ H+L L KTL FS
Sbjct: 121 NLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLVCEHELEPLQGKTLSFFS 180
Query: 616 VAYNNLSGEIP-EW 628
+A N+L + +W
Sbjct: 181 LAANSLYSRVSVDW 194
Score = 30.8 bits (68), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 26/92 (28%), Positives = 42/92 (45%), Gaps = 5/92 (5%)
Query: 560 LTRIQTLNLSHNNLTGSIPSTFSNLKHVESLDLSNNKLNGKIPHQLVELKTLEVFSVAYN 619
L+ +Q L L+HN L P FS+L + L L++N+L + L LE+ ++ N
Sbjct: 479 LSHLQVLYLNHNYLNSLPPGVFSHLTALRGLSLNSNRLTVLSHNDLP--ANLEILDISRN 536
Query: 620 NLSGEIPEWKAQFATFNESSYEGNTFLCGLPL 651
L P+ F + + N F+C L
Sbjct: 537 QLLAPNPD---VFVSLSVLDITHNKFICECEL 565
Score = 30.8 bits (68), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 20/65 (30%), Positives = 35/65 (53%), Gaps = 1/65 (1%)
Query: 561 TRIQTLNLSHNNLTGSIPSTFSNLKHVESLDLSNNKLNGKIPHQLVELKTLEVFSVAYNN 620
+ ++ L+LSH + F LK ++ L+L+ NK+N L L+V +++Y N
Sbjct: 266 SSVRHLDLSHGFVFSLNSRVFETLKDLKVLNLAYNKINKIADEAFYGLDNLQVLNLSY-N 324
Query: 621 LSGEI 625
L GE+
Sbjct: 325 LLGEL 329
Score = 30.4 bits (67), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 35/127 (27%), Positives = 64/127 (50%), Gaps = 14/127 (11%)
Query: 286 SRNF-NLTNLQWLQLEGNRFVGEIPQSLSKCSSLEGLYLNNNSLLGKI--PRWLGNLTRL 342
SR F L +L+ L L N+ ++ +L+ L L+ N LLG++ + G L ++
Sbjct: 283 SRVFETLKDLKVLNLAYNKINKIADEAFYGLDNLQVLNLSYN-LLGELYSSNFYG-LPKV 340
Query: 343 QYIIMPNNHLEGPIPVEFCQLDSLQILDISDNNISG-----SLPSCF----HPLSIKQVH 393
YI + NH+ F L+ LQ LD+ DN ++ S+P F +++ +++
Sbjct: 341 AYIDLQKNHIAIIQDQTFKFLEKLQTLDLRDNALTTIHFIPSIPDIFLSGNKLVTLPKIN 400
Query: 394 LSKNMLH 400
L+ N++H
Sbjct: 401 LTANLIH 407
Score = 30.0 bits (66), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 17/39 (43%), Positives = 25/39 (64%)
Query: 18 LVHLQELYIASNDLRGSLPWCMANMTSLRILDVSSNQLT 56
L HLQ LY+ N L P +++T+LR L ++SN+LT
Sbjct: 479 LSHLQVLYLNHNYLNSLPPGVFSHLTALRGLSLNSNRLT 517
Score = 29.6 bits (65), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 31/99 (31%), Positives = 47/99 (47%), Gaps = 12/99 (12%)
Query: 316 SSLEGLYLNNNSLLGKIPRWLGNLTRLQYIIMPNNHL----EGPIPVEFCQLDSLQILDI 371
S L+ LYLN+N L P +LT L+ + + +N L +P +L+ILDI
Sbjct: 480 SHLQVLYLNHNYLNSLPPGVFSHLTALRGLSLNSNRLTVLSHNDLPA------NLEILDI 533
Query: 372 SDNNISGSLPSCFHPLSIKQVHLSKNMLHGQLKRGTFFN 410
S N + P F LS+ + +K + +L TF N
Sbjct: 534 SRNQLLAPNPDVFVSLSVLDITHNKFICECEL--STFIN 570
>pdb|1H6U|A Chain A, Internalin H: Crystal Structure Of Fused N-Terminal
Domains
Length = 308
Score = 32.0 bits (71), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 30/110 (27%), Positives = 52/110 (47%), Gaps = 24/110 (21%)
Query: 15 LCSLVHLQELYIASNDLRGSLPWCMANMTSLRILDVSSNQLTGSISSSPLVHLTSIEELM 74
L +L + EL ++ N L+ +A + S++ LD++S Q+T +PL L++++ L
Sbjct: 81 LKNLTKITELELSGNPLKNV--SAIAGLQSIKTLDLTSTQIT---DVTPLAGLSNLQVLY 135
Query: 75 LSNN---------------YFQIPIS----LEPLFNYSRLKIFNAENNEI 105
L N Y I + L PL N S+L A++N+I
Sbjct: 136 LDLNQITNISPLAGLTNLQYLSIGNAQVSDLTPLANLSKLTTLKADDNKI 185
>pdb|3PMH|G Chain G, Mechanism Of Sulfotyrosine-Mediated Glycoprotein Ib
Interaction With Two Distinct Alpha-Thrombin Sites
Length = 290
Score = 32.0 bits (71), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 42/152 (27%), Positives = 64/152 (42%), Gaps = 20/152 (13%)
Query: 1 MSSCEVNGVVRSQGLCSLVHLQELYIASNDLRGSLPWCMANMTSLRILDVSSNQLTGSIS 60
++ +V+G + G L H N L+ SLP + +L +LDVS N+LT S+
Sbjct: 67 LTKLQVDGTLPVLGTLDLSH--------NQLQ-SLPLLGQTLPALTVLDVSFNRLT-SLP 116
Query: 61 SSPLVHLTSIEELMLSNNYFQI--PISLEPLFNYSRLKIFNAENNEIKAEITESHSLIAP 118
L L ++EL L N + P L P +L + N E+ A L+
Sbjct: 117 LGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPA------GLLNG 170
Query: 119 KFQLNTLSLSSNYGDGFIFPKFLYHQHDLEYV 150
L+TL L N + PK + H L +
Sbjct: 171 LENLDTLLLQEN--SLYTIPKGFFGSHLLPFA 200
Score = 30.0 bits (66), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 36/113 (31%), Positives = 46/113 (40%), Gaps = 2/113 (1%)
Query: 240 GNMKFLQILDLSNNHLTGEIPEHLAVGCVNLQFLALSNNNLQGHLFSRNFNLTNLQWLQL 299
G + L LDLS+N L +P L L L +S N L L LQ L L
Sbjct: 74 GTLPVLGTLDLSHNQLQS-LP-LLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYL 131
Query: 300 EGNRFVGEIPQSLSKCSSLEGLYLNNNSLLGKIPRWLGNLTRLQYIIMPNNHL 352
+GN P L+ LE L L NN+L L L L +++ N L
Sbjct: 132 KGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSL 184
Score = 29.3 bits (64), Expect = 7.0, Method: Compositional matrix adjust.
Identities = 27/90 (30%), Positives = 43/90 (47%), Gaps = 2/90 (2%)
Query: 533 GKVLSLLSGLDLSCNKLIGHIPPQIGNLTRIQTLNLSHNNLTGSIPSTFSNLKHVESLDL 592
G+ L L+ LD+S N+L + L +Q L L N L P + +E L L
Sbjct: 96 GQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSL 155
Query: 593 SNNKLNGKIPHQLVE-LKTLEVFSVAYNNL 621
+NN L ++P L+ L+ L+ + N+L
Sbjct: 156 ANNNLT-ELPAGLLNGLENLDTLLLQENSL 184
>pdb|1OOK|G Chain G, Crystal Structure Of The Complex Of Platelet Receptor
Gpib-alpha And Human Alpha-thrombin
Length = 290
Score = 32.0 bits (71), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 42/152 (27%), Positives = 64/152 (42%), Gaps = 20/152 (13%)
Query: 1 MSSCEVNGVVRSQGLCSLVHLQELYIASNDLRGSLPWCMANMTSLRILDVSSNQLTGSIS 60
++ +V+G + G L H N L+ SLP + +L +LDVS N+LT S+
Sbjct: 67 LTKLQVDGTLPVLGTLDLSH--------NQLQ-SLPLLGQTLPALTVLDVSFNRLT-SLP 116
Query: 61 SSPLVHLTSIEELMLSNNYFQI--PISLEPLFNYSRLKIFNAENNEIKAEITESHSLIAP 118
L L ++EL L N + P L P +L + N E+ A L+
Sbjct: 117 LGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPA------GLLNG 170
Query: 119 KFQLNTLSLSSNYGDGFIFPKFLYHQHDLEYV 150
L+TL L N + PK + H L +
Sbjct: 171 LENLDTLLLQEN--SLYTIPKGFFGSHLLPFA 200
Score = 30.0 bits (66), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 36/113 (31%), Positives = 46/113 (40%), Gaps = 2/113 (1%)
Query: 240 GNMKFLQILDLSNNHLTGEIPEHLAVGCVNLQFLALSNNNLQGHLFSRNFNLTNLQWLQL 299
G + L LDLS+N L +P L L L +S N L L LQ L L
Sbjct: 74 GTLPVLGTLDLSHNQLQS-LP-LLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYL 131
Query: 300 EGNRFVGEIPQSLSKCSSLEGLYLNNNSLLGKIPRWLGNLTRLQYIIMPNNHL 352
+GN P L+ LE L L NN+L L L L +++ N L
Sbjct: 132 KGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSL 184
Score = 29.6 bits (65), Expect = 6.7, Method: Compositional matrix adjust.
Identities = 27/90 (30%), Positives = 43/90 (47%), Gaps = 2/90 (2%)
Query: 533 GKVLSLLSGLDLSCNKLIGHIPPQIGNLTRIQTLNLSHNNLTGSIPSTFSNLKHVESLDL 592
G+ L L+ LD+S N+L + L +Q L L N L P + +E L L
Sbjct: 96 GQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSL 155
Query: 593 SNNKLNGKIPHQLVE-LKTLEVFSVAYNNL 621
+NN L ++P L+ L+ L+ + N+L
Sbjct: 156 ANNNLT-ELPAGLLNGLENLDTLLLQENSL 184
>pdb|1GWB|B Chain B, Structure Of Glycoprotein 1b
pdb|1GWB|A Chain A, Structure Of Glycoprotein 1b
Length = 281
Score = 32.0 bits (71), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 41/152 (26%), Positives = 63/152 (41%), Gaps = 20/152 (13%)
Query: 1 MSSCEVNGVVRSQGLCSLVHLQELYIASNDLRGSLPWCMANMTSLRILDVSSNQLTGSIS 60
++ +V+G + G L H N L+ SLP + +L +LDVS N+LT S+
Sbjct: 68 LTKLQVDGTLPVLGTLDLSH--------NQLQ-SLPLLGQTLPALTVLDVSFNRLT-SLP 117
Query: 61 SSPLVHLTSIEELMLSNNYFQI--PISLEPLFNYSRLKIFNAENNEIKAEITESHSLIAP 118
L L ++EL L N + P L P +L + N E+ A +
Sbjct: 118 LGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLE---- 173
Query: 119 KFQLNTLSLSSNYGDGFIFPKFLYHQHDLEYV 150
L+TL L N + PK + H L +
Sbjct: 174 --NLDTLLLQEN--SLYTIPKGFFGSHLLPFA 201
Score = 29.6 bits (65), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 36/113 (31%), Positives = 46/113 (40%), Gaps = 2/113 (1%)
Query: 240 GNMKFLQILDLSNNHLTGEIPEHLAVGCVNLQFLALSNNNLQGHLFSRNFNLTNLQWLQL 299
G + L LDLS+N L +P L L L +S N L L LQ L L
Sbjct: 75 GTLPVLGTLDLSHNQLQ-SLP-LLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYL 132
Query: 300 EGNRFVGEIPQSLSKCSSLEGLYLNNNSLLGKIPRWLGNLTRLQYIIMPNNHL 352
+GN P L+ LE L L NN+L L L L +++ N L
Sbjct: 133 KGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSL 185
Score = 29.3 bits (64), Expect = 7.2, Method: Compositional matrix adjust.
Identities = 33/116 (28%), Positives = 52/116 (44%), Gaps = 3/116 (2%)
Query: 533 GKVLSLLSGLDLSCNKLIGHIPPQIGNLTRIQTLNLSHNNLTGSIPSTFSNLKHVESLDL 592
G+ L L+ LD+S N+L + L +Q L L N L P + +E L L
Sbjct: 97 GQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSL 156
Query: 593 SNNKLNGKIPHQLVE-LKTLEVFSVAYNNLSGEIPEWKAQFATFNESSYEGNTFLC 647
+NN L ++P L+ L+ L+ + N+L IP+ + GN +LC
Sbjct: 157 ANNNLT-ELPAGLLNGLENLDTLLLQENSLY-TIPKGFFGSHLLPFAFLHGNPWLC 210
>pdb|1P9A|G Chain G, Crystal Structure Of N-terminal Domain Of Human Platelet
Receptor Glycoprotein Ib-alpha At 1.7 Angstrom
Resolution
pdb|1QYY|A Chain A, Crystal Structure Of N-Terminal Domain Of Human Platelet
Receptor Glycoprotein Ib-Alpha At 2.8 Angstrom
Resolution
pdb|1QYY|G Chain G, Crystal Structure Of N-Terminal Domain Of Human Platelet
Receptor Glycoprotein Ib-Alpha At 2.8 Angstrom
Resolution
Length = 290
Score = 32.0 bits (71), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 42/152 (27%), Positives = 64/152 (42%), Gaps = 20/152 (13%)
Query: 1 MSSCEVNGVVRSQGLCSLVHLQELYIASNDLRGSLPWCMANMTSLRILDVSSNQLTGSIS 60
++ +V+G + G L H N L+ SLP + +L +LDVS N+LT S+
Sbjct: 67 LTKLQVDGTLPVLGTLDLSH--------NQLQ-SLPLLGQTLPALTVLDVSFNRLT-SLP 116
Query: 61 SSPLVHLTSIEELMLSNNYFQI--PISLEPLFNYSRLKIFNAENNEIKAEITESHSLIAP 118
L L ++EL L N + P L P +L + N E+ A L+
Sbjct: 117 LGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPA------GLLNG 170
Query: 119 KFQLNTLSLSSNYGDGFIFPKFLYHQHDLEYV 150
L+TL L N + PK + H L +
Sbjct: 171 LENLDTLLLQEN--SLYTIPKGFFGSHLLPFA 200
Score = 30.0 bits (66), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 36/113 (31%), Positives = 46/113 (40%), Gaps = 2/113 (1%)
Query: 240 GNMKFLQILDLSNNHLTGEIPEHLAVGCVNLQFLALSNNNLQGHLFSRNFNLTNLQWLQL 299
G + L LDLS+N L +P L L L +S N L L LQ L L
Sbjct: 74 GTLPVLGTLDLSHNQLQS-LP-LLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYL 131
Query: 300 EGNRFVGEIPQSLSKCSSLEGLYLNNNSLLGKIPRWLGNLTRLQYIIMPNNHL 352
+GN P L+ LE L L NN+L L L L +++ N L
Sbjct: 132 KGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSL 184
Score = 29.6 bits (65), Expect = 6.5, Method: Compositional matrix adjust.
Identities = 27/90 (30%), Positives = 43/90 (47%), Gaps = 2/90 (2%)
Query: 533 GKVLSLLSGLDLSCNKLIGHIPPQIGNLTRIQTLNLSHNNLTGSIPSTFSNLKHVESLDL 592
G+ L L+ LD+S N+L + L +Q L L N L P + +E L L
Sbjct: 96 GQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSL 155
Query: 593 SNNKLNGKIPHQLVE-LKTLEVFSVAYNNL 621
+NN L ++P L+ L+ L+ + N+L
Sbjct: 156 ANNNLT-ELPAGLLNGLENLDTLLLQENSL 184
>pdb|2V9T|B Chain B, Complex Between The Second Lrr Domain Of Slit2 And The
First Ig Domain From Robo1
Length = 220
Score = 32.0 bits (71), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 20/65 (30%), Positives = 31/65 (47%), Gaps = 1/65 (1%)
Query: 563 IQTLNLSHNNLTGSIPSTFSNLKHVESLDLSNNKLNGKIPHQLVELKTLEVFSVAYNNLS 622
I + L N + P FS K + +DLSNN+++ P L++L V Y N
Sbjct: 34 ITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSL-VLYGNKI 92
Query: 623 GEIPE 627
E+P+
Sbjct: 93 TELPK 97
Score = 29.6 bits (65), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 19/63 (30%), Positives = 32/63 (50%), Gaps = 1/63 (1%)
Query: 386 PLSIKQVHLSKNMLHGQLKRGTFFNCSSLVTLDLSYNRLNGSIPDWVDGLSQLSHLILGH 445
P +I ++ L +N + + G F L +DLS N+++ PD GL L+ L+L
Sbjct: 31 PETITEIRLEQNTIK-VIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYG 89
Query: 446 NNL 448
N +
Sbjct: 90 NKI 92
>pdb|2V9S|A Chain A, Second Lrr Domain Of Human Slit2
pdb|2V9S|B Chain B, Second Lrr Domain Of Human Slit2
pdb|2V9S|C Chain C, Second Lrr Domain Of Human Slit2
pdb|2V9S|D Chain D, Second Lrr Domain Of Human Slit2
Length = 220
Score = 32.0 bits (71), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 20/65 (30%), Positives = 31/65 (47%), Gaps = 1/65 (1%)
Query: 563 IQTLNLSHNNLTGSIPSTFSNLKHVESLDLSNNKLNGKIPHQLVELKTLEVFSVAYNNLS 622
I + L N + P FS K + +DLSNN+++ P L++L V Y N
Sbjct: 34 ITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSL-VLYGNKI 92
Query: 623 GEIPE 627
E+P+
Sbjct: 93 TELPK 97
Score = 30.0 bits (66), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 19/63 (30%), Positives = 32/63 (50%), Gaps = 1/63 (1%)
Query: 386 PLSIKQVHLSKNMLHGQLKRGTFFNCSSLVTLDLSYNRLNGSIPDWVDGLSQLSHLILGH 445
P +I ++ L +N + + G F L +DLS N+++ PD GL L+ L+L
Sbjct: 31 PETITEIRLEQNTIK-VIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYG 89
Query: 446 NNL 448
N +
Sbjct: 90 NKI 92
>pdb|1WWL|A Chain A, Crystal Structure Of Cd14
pdb|1WWL|B Chain B, Crystal Structure Of Cd14
Length = 312
Score = 31.6 bits (70), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 30/89 (33%), Positives = 45/89 (50%), Gaps = 9/89 (10%)
Query: 342 LQYIIMPNNHLEGPIPVEFCQLDS---LQILDISDNNI--SGSLPSCFHPLSIKQVHLSK 396
LQ + + N +E P V + LQ LD+S N++ + PSC P + ++LS
Sbjct: 203 LQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSF 262
Query: 397 NMLHGQLKRGTFFNCSSLVTLDLSYNRLN 425
L Q+ +G + L LDLSYNRL+
Sbjct: 263 TGLK-QVPKGLP---AKLSVLDLSYNRLD 287
>pdb|1P8V|A Chain A, Crystal Structure Of The Complex Of Platelet Receptor
Gpib-alpha And Alpha-thrombin At 2.6a
Length = 279
Score = 31.6 bits (70), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 42/152 (27%), Positives = 64/152 (42%), Gaps = 20/152 (13%)
Query: 1 MSSCEVNGVVRSQGLCSLVHLQELYIASNDLRGSLPWCMANMTSLRILDVSSNQLTGSIS 60
++ +V+G + G L H N L+ SLP + +L +LDVS N+LT S+
Sbjct: 67 LTKLQVDGTLPVLGTLDLSH--------NQLQ-SLPLLGQTLPALTVLDVSFNRLT-SLP 116
Query: 61 SSPLVHLTSIEELMLSNNYFQI--PISLEPLFNYSRLKIFNAENNEIKAEITESHSLIAP 118
L L ++EL L N + P L P +L + N E+ A L+
Sbjct: 117 LGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPA------GLLNG 170
Query: 119 KFQLNTLSLSSNYGDGFIFPKFLYHQHDLEYV 150
L+TL L N + PK + H L +
Sbjct: 171 LENLDTLLLQEN--SLYTIPKGFFGSHLLPFA 200
Score = 29.6 bits (65), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 36/113 (31%), Positives = 46/113 (40%), Gaps = 2/113 (1%)
Query: 240 GNMKFLQILDLSNNHLTGEIPEHLAVGCVNLQFLALSNNNLQGHLFSRNFNLTNLQWLQL 299
G + L LDLS+N L +P L L L +S N L L LQ L L
Sbjct: 74 GTLPVLGTLDLSHNQLQ-SLP-LLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYL 131
Query: 300 EGNRFVGEIPQSLSKCSSLEGLYLNNNSLLGKIPRWLGNLTRLQYIIMPNNHL 352
+GN P L+ LE L L NN+L L L L +++ N L
Sbjct: 132 KGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSL 184
Score = 29.3 bits (64), Expect = 7.2, Method: Compositional matrix adjust.
Identities = 33/116 (28%), Positives = 52/116 (44%), Gaps = 3/116 (2%)
Query: 533 GKVLSLLSGLDLSCNKLIGHIPPQIGNLTRIQTLNLSHNNLTGSIPSTFSNLKHVESLDL 592
G+ L L+ LD+S N+L + L +Q L L N L P + +E L L
Sbjct: 96 GQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSL 155
Query: 593 SNNKLNGKIPHQLVE-LKTLEVFSVAYNNLSGEIPEWKAQFATFNESSYEGNTFLC 647
+NN L ++P L+ L+ L+ + N+L IP+ + GN +LC
Sbjct: 156 ANNNLT-ELPAGLLNGLENLDTLLLQENSLY-TIPKGFFGSHLLPFAFLHGNPWLC 209
>pdb|3T6Q|A Chain A, Crystal Structure Of Mouse Rp105MD-1 Complex
pdb|3T6Q|B Chain B, Crystal Structure Of Mouse Rp105MD-1 Complex
Length = 606
Score = 31.6 bits (70), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 24/80 (30%), Positives = 39/80 (48%), Gaps = 2/80 (2%)
Query: 370 DISDNNISGSLPSCFHPLSIKQVHLSKNMLHGQLKRGTFFNCSSLVTLDLSYNRLNGSIP 429
D+ D +IS ++ +S++ ++L K+ + TF S L LDL+ L +P
Sbjct: 237 DMDDEDISPAVFEGLCEMSVESINLQKHYFFN-ISSNTFHCFSGLQELDLTATHL-SELP 294
Query: 430 DWVDGLSQLSHLILGHNNLE 449
+ GLS L L+L N E
Sbjct: 295 SGLVGLSTLKKLVLSANKFE 314
Score = 30.0 bits (66), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 62/228 (27%), Positives = 91/228 (39%), Gaps = 36/228 (15%)
Query: 222 YVFNNSMNALDGSIPSSFGNMKFLQILDLSNNHLTGEIPEHLAVGCVNLQFLALSNNNLQ 281
Y FN S N +F LQ LDL+ HL+ E+P L VG L+ L LS N +
Sbjct: 265 YFFNISSN--------TFHCFSGLQELDLTATHLS-ELPSGL-VGLSTLKKLVLSANKFE 314
Query: 282 GHLFSRNFNLTNLQWLQLEGNRFVGEIPQS-LSKCSSLEGLYLNNNSLLGK--IPRWLGN 338
N +L L ++GN E+ L +L L L+++ + L N
Sbjct: 315 NLCQISASNFPSLTHLSIKGNTKRLELGTGCLENLENLRELDLSHDDIETSDCCNLQLRN 374
Query: 339 LTRLQYIIMPNNHLEGPIPVEFCQLDSLQILDISDNNISGSLPSCFHPLSIKQVHLSKNM 398
L+ LQ + + N F + L++LD++ F L +K
Sbjct: 375 LSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLA-----------FTRLKVKDA------ 417
Query: 399 LHGQLKRGTFFNCSSLVTLDLSYNRLNGSIPDWVDGLSQLSHLILGHN 446
+ F N L L+LS++ L+ S DGL L HL L N
Sbjct: 418 ------QSPFQNLHLLKVLNLSHSLLDISSEQLFDGLPALQHLNLQGN 459
>pdb|4FMZ|A Chain A, Crystal Structure Of An Internalin (Inlf) From Listeria
Monocytogenes Str. 4b F2365 At 1.91 A Resolution
pdb|4FMZ|B Chain B, Crystal Structure Of An Internalin (Inlf) From Listeria
Monocytogenes Str. 4b F2365 At 1.91 A Resolution
Length = 347
Score = 31.6 bits (70), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 45/170 (26%), Positives = 72/170 (42%), Gaps = 12/170 (7%)
Query: 189 PIHSHKRLRQLDVSNNNIRGHIPVKIGDVLPSLYVFNNSMNALDGSIPSSFGNMKFLQIL 248
PI + L L ++ N I P+ L SL+ F +N + P N L L
Sbjct: 172 PIANLTDLYSLSLNYNQIEDISPLA---SLTSLHYFTAYVNQITDITP--VANXTRLNSL 226
Query: 249 DLSNNHLTGEIPEHLAVGCVNLQFLALSNNNLQGHLFSRNFNLTNLQWLQLEGNRFVGEI 308
+ NN +T P L +L + N + + +LT L+ L + N+ + +I
Sbjct: 227 KIGNNKITDLSP---LANLSQLTWLEIGTNQISD--INAVKDLTKLKXLNVGSNQ-ISDI 280
Query: 309 PQSLSKCSSLEGLYLNNNSLLGKIPRWLGNLTRLQYIIMPNNHLEGPIPV 358
L+ S L L+LNNN L + +G LT L + + NH+ P+
Sbjct: 281 -SVLNNLSQLNSLFLNNNQLGNEDXEVIGGLTNLTTLFLSQNHITDIRPL 329
>pdb|3G3A|A Chain A, Structure Of A Lamprey Variable Lymphocyte Receptor In
Complex With A Protein Antigen
pdb|3G3A|C Chain C, Structure Of A Lamprey Variable Lymphocyte Receptor In
Complex With A Protein Antigen
pdb|3G3A|E Chain E, Structure Of A Lamprey Variable Lymphocyte Receptor In
Complex With A Protein Antigen
pdb|3G3A|G Chain G, Structure Of A Lamprey Variable Lymphocyte Receptor In
Complex With A Protein Antigen
Length = 178
Score = 31.6 bits (70), Expect = 1.7, Method: Composition-based stats.
Identities = 22/72 (30%), Positives = 35/72 (48%), Gaps = 4/72 (5%)
Query: 210 IPVKIGDVLPSLYVFNNSMNALDGSIPSSFGNMKFLQILDLSNNHLTGEIPEHLAVGCVN 269
+P I LY+++N + L+ P F + L LDL NN LT +P +
Sbjct: 32 VPTGIPTTTQVLYLYDNQITKLE---PGVFDRLTQLTRLDLDNNQLT-VLPAGVFDKLTQ 87
Query: 270 LQFLALSNNNLQ 281
L L+L++N L+
Sbjct: 88 LTQLSLNDNQLK 99
Score = 31.2 bits (69), Expect = 1.9, Method: Composition-based stats.
Identities = 21/59 (35%), Positives = 28/59 (47%), Gaps = 3/59 (5%)
Query: 540 SGLDLSCN-KLIGHIPPQIGNLTRIQTLNLSHNNLTGSIPSTFSNLKHVESLDLSNNKL 597
SG + C+ K + +P I T Q L L N +T P F L + LDL NN+L
Sbjct: 18 SGTTVDCSGKSLASVPTGIPTTT--QVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQL 74
Score = 30.8 bits (68), Expect = 2.4, Method: Composition-based stats.
Identities = 24/83 (28%), Positives = 37/83 (44%), Gaps = 10/83 (12%)
Query: 523 TTKNIAYIYQGKV----------LSLLSGLDLSCNKLIGHIPPQIGNLTRIQTLNLSHNN 572
TT + Y+Y ++ L+ L+ LDL N+L LT++ L+L+ N
Sbjct: 38 TTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDNQ 97
Query: 573 LTGSIPSTFSNLKHVESLDLSNN 595
L F NLK + + L NN
Sbjct: 98 LKSIPRGAFDNLKSLTHIWLLNN 120
Score = 30.4 bits (67), Expect = 3.6, Method: Composition-based stats.
Identities = 28/84 (33%), Positives = 42/84 (50%), Gaps = 4/84 (4%)
Query: 365 SLQILDISDNNISGSLPSCFHPLS-IKQVHLSKNMLHGQLKRGTFFNCSSLVTLDLSYNR 423
+ Q+L + DN I+ P F L+ + ++ L N L L G F + L L L+ N+
Sbjct: 39 TTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQL-TVLPAGVFDKLTQLTQLSLNDNQ 97
Query: 424 LNGSIPDWV-DGLSQLSHLILGHN 446
L SIP D L L+H+ L +N
Sbjct: 98 LK-SIPRGAFDNLKSLTHIWLLNN 120
>pdb|2WSC|3 Chain 3, Improved Model Of Plant Photosystem I
pdb|2WSE|3 Chain 3, Improved Model Of Plant Photosystem I
pdb|2WSF|3 Chain 3, Improved Model Of Plant Photosystem I
Length = 276
Score = 31.2 bits (69), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 21/60 (35%), Positives = 29/60 (48%), Gaps = 6/60 (10%)
Query: 211 PVKIGDVLPSLYVFNNSMNALDGSIPSSFGNMKFLQILDLSNNHLTGEI--PEHLAVGCV 268
PVK G P + S++ LDGS+P +G L LS+ TG P+ LA G +
Sbjct: 49 PVKQGSDRPLWFASKQSLSYLDGSLPGDYG----FDPLGLSDPEGTGGFIEPKWLAYGEI 104
>pdb|3G3B|A Chain A, Structure Of A Lamprey Variable Lymphocyte Receptor Mutant
In Complex With A Protein Antigen
pdb|3G3B|C Chain C, Structure Of A Lamprey Variable Lymphocyte Receptor Mutant
In Complex With A Protein Antigen
pdb|3G3B|E Chain E, Structure Of A Lamprey Variable Lymphocyte Receptor Mutant
In Complex With A Protein Antigen
pdb|3G3B|G Chain G, Structure Of A Lamprey Variable Lymphocyte Receptor Mutant
In Complex With A Protein Antigen
Length = 170
Score = 30.8 bits (68), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 24/83 (28%), Positives = 40/83 (48%), Gaps = 5/83 (6%)
Query: 199 LDVSNNNIRGHIPVKIGDVLPSLYVFNNSMNALDGSIPSSFGNMKFLQILDLSNNHLTGE 258
+D S ++ +P I LY+++N + L+ P F + L LDL NN LT
Sbjct: 14 VDCSGKSL-ASVPTGIPTTTQVLYLYDNRITKLE---PGVFDRLTQLTRLDLDNNQLT-V 68
Query: 259 IPEHLAVGCVNLQFLALSNNNLQ 281
+P + L L+L++N L+
Sbjct: 69 LPAGVFDKLTQLTQLSLNDNQLK 91
Score = 30.0 bits (66), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 21/59 (35%), Positives = 28/59 (47%), Gaps = 3/59 (5%)
Query: 540 SGLDLSCN-KLIGHIPPQIGNLTRIQTLNLSHNNLTGSIPSTFSNLKHVESLDLSNNKL 597
SG + C+ K + +P G T Q L L N +T P F L + LDL NN+L
Sbjct: 10 SGTTVDCSGKSLASVP--TGIPTTTQVLYLYDNRITKLEPGVFDRLTQLTRLDLDNNQL 66
>pdb|3G39|A Chain A, Structure Of A Lamprey Variable Lymphocyte Receptor
Length = 170
Score = 30.8 bits (68), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 24/83 (28%), Positives = 40/83 (48%), Gaps = 5/83 (6%)
Query: 199 LDVSNNNIRGHIPVKIGDVLPSLYVFNNSMNALDGSIPSSFGNMKFLQILDLSNNHLTGE 258
+D S ++ +P I LY+++N + L+ P F + L LDL NN LT
Sbjct: 14 VDCSGKSL-ASVPTGIPTTTQVLYLYDNQITKLE---PGVFDRLTQLTRLDLDNNQLT-V 68
Query: 259 IPEHLAVGCVNLQFLALSNNNLQ 281
+P + L L+L++N L+
Sbjct: 69 LPAGVFDKLTQLTQLSLNDNQLK 91
Score = 30.0 bits (66), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 21/59 (35%), Positives = 28/59 (47%), Gaps = 3/59 (5%)
Query: 540 SGLDLSCN-KLIGHIPPQIGNLTRIQTLNLSHNNLTGSIPSTFSNLKHVESLDLSNNKL 597
SG + C+ K + +P G T Q L L N +T P F L + LDL NN+L
Sbjct: 10 SGTTVDCSGKSLASVP--TGIPTTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQL 66
>pdb|1H8Y|A Chain A, Crystal Structure Of The Class D Beta-lactamase Oxa-13 In
Complex With Meropenem
pdb|1H8Y|B Chain B, Crystal Structure Of The Class D Beta-lactamase Oxa-13 In
Complex With Meropenem
pdb|1H8Z|A Chain A, Crystal Structure Of The Class D Beta-Lactamase Oxa-13
pdb|1H8Z|B Chain B, Crystal Structure Of The Class D Beta-Lactamase Oxa-13
pdb|1H5X|A Chain A, Crystal Structure Of The Class D Beta-Lactamase Oxa-13
Complexed With Imipenem
pdb|1H5X|B Chain B, Crystal Structure Of The Class D Beta-Lactamase Oxa-13
Complexed With Imipenem
Length = 247
Score = 30.4 bits (67), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 30/130 (23%), Positives = 59/130 (45%), Gaps = 15/130 (11%)
Query: 495 PDEQFEIFFSIEGHQGFLEKQNHEIFEFTTKNIAYIYQGKVLSLLSGLDLSCNKLIGHIP 554
P F+I +I G + + K H++F++ K A + LSL + +S + I
Sbjct: 46 PASTFKIPSAIIGLETGVIKNEHQVFKWDGKPRAMKQWERDLSLRGAIQVSAVPVFQQIA 105
Query: 555 PQIGNL---TRIQTLNLSHNNLTGSIP----------STFSNLKHVESLDLSNNKLNGKI 601
++G + ++ + + N++G I S + ++ +ESL L NKL+
Sbjct: 106 REVGEVRMQKYLKKFSYGNQNISGGIDKFWLEGQLRISAVNQVEFLESLFL--NKLSASK 163
Query: 602 PHQLVELKTL 611
+QL+ + L
Sbjct: 164 ENQLIVKEAL 173
>pdb|2WGV|A Chain A, Crystal Structure Of The Oxa-10 V117t Mutant At Ph 6.5
Inhibited By A Chloride Ion
pdb|2WGV|B Chain B, Crystal Structure Of The Oxa-10 V117t Mutant At Ph 6.5
Inhibited By A Chloride Ion
pdb|2WGW|B Chain B, Crystal Structure Of The Oxa-10 V117t Mutant At Ph 8.0
Length = 248
Score = 30.0 bits (66), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 28/125 (22%), Positives = 57/125 (45%), Gaps = 15/125 (12%)
Query: 495 PDEQFEIFFSIEGHQGFLEKQNHEIFEFTTKNIAYIYQGKVLSLLSGLDLSCNKLIGHIP 554
P F+I +I G + + K H++F++ K A + L+L + +S + I
Sbjct: 47 PASTFKIPNAIIGLETGVIKNEHQVFKWDGKPRAMKQWERDLTLRGAIQVSATPVFQQIA 106
Query: 555 PQIGNL---TRIQTLNLSHNNLTGSIP----------STFSNLKHVESLDLSNNKLNGKI 601
++G + ++ + + N++G I S + ++ +ESL L NKL+
Sbjct: 107 REVGEVRMQKYLKKFSYGNQNISGGIDKFWLEGQLRISAVNQVEFLESLYL--NKLSASK 164
Query: 602 PHQLV 606
+QL+
Sbjct: 165 ENQLI 169
>pdb|4AY9|X Chain X, Structure Of Follicle-Stimulating Hormone In Complex With
The Entire Ectodomain Of Its Receptor
pdb|4AY9|Y Chain Y, Structure Of Follicle-Stimulating Hormone In Complex With
The Entire Ectodomain Of Its Receptor
pdb|4AY9|Z Chain Z, Structure Of Follicle-Stimulating Hormone In Complex With
The Entire Ectodomain Of Its Receptor
Length = 350
Score = 30.0 bits (66), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 49/170 (28%), Positives = 76/170 (44%), Gaps = 10/170 (5%)
Query: 258 EIPEHLAVGCVNLQFLALSNNNLQGHLFSRNFNLTNLQWLQLEGNRFVGEIPQSL-SKCS 316
EIP L + L+F+ +Q FS +L+ +++ N + I + S
Sbjct: 23 EIPSDLPRNAIELRFVLTKLRVIQKGAFS---GFGDLEKIEISQNDVLEVIEADVFSNLP 79
Query: 317 SLEGLYLNN-NSLLGKIPRWLGNLTRLQYIIMPNNHLEGPIPVEFCQLDSLQ--ILDISD 373
L + + N+LL P NL LQY+++ N ++ V ++ SLQ +LDI D
Sbjct: 80 KLHEIRIEKANNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVH--KIHSLQKVLLDIQD 137
Query: 374 N-NISGSLPSCFHPLSIKQVHLSKNMLHGQLKRGTFFNCSSLVTLDLSYN 422
N NI + F LS + V L N Q + FN + L L+LS N
Sbjct: 138 NINIHTIERNSFVGLSFESVILWLNKNGIQEIHNSAFNGTQLDELNLSDN 187
>pdb|1DS9|A Chain A, Solution Structure Of Chlamydomonas Outer Arm Dynein Light
Chain 1
Length = 198
Score = 29.6 bits (65), Expect = 5.7, Method: Composition-based stats.
Identities = 22/71 (30%), Positives = 39/71 (54%), Gaps = 11/71 (15%)
Query: 21 LQELYIASNDLRGSLPWCMANMTSLRILDVSSNQLTGSISSSPLVHLTSIEELMLSNNYF 80
L+EL+I+ N + SL + + +LR+L +S+N++T L L +E+L+L+ N
Sbjct: 95 LEELWISYNQI-ASLSG-IEKLVNLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGN-- 150
Query: 81 QIPISLEPLFN 91
PL+N
Sbjct: 151 -------PLYN 154
>pdb|1M9L|A Chain A, Relaxation-Based Refined Structure Of Chlamydomonas Outer
Arm Dynein Light Chain 1
Length = 199
Score = 29.6 bits (65), Expect = 5.9, Method: Composition-based stats.
Identities = 22/71 (30%), Positives = 39/71 (54%), Gaps = 11/71 (15%)
Query: 21 LQELYIASNDLRGSLPWCMANMTSLRILDVSSNQLTGSISSSPLVHLTSIEELMLSNNYF 80
L+EL+I+ N + SL + + +LR+L +S+N++T L L +E+L+L+ N
Sbjct: 96 LEELWISYNQI-ASLSG-IEKLVNLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGN-- 151
Query: 81 QIPISLEPLFN 91
PL+N
Sbjct: 152 -------PLYN 155
>pdb|1XWD|C Chain C, Crystal Structure Of Human Follicle Stimulating Hormone
Complexed With Its Receptor
pdb|1XWD|F Chain F, Crystal Structure Of Human Follicle Stimulating Hormone
Complexed With Its Receptor
Length = 252
Score = 29.3 bits (64), Expect = 7.2, Method: Compositional matrix adjust.
Identities = 51/180 (28%), Positives = 81/180 (45%), Gaps = 10/180 (5%)
Query: 258 EIPEHLAVGCVNLQFLALSNNNLQGHLFSRNFNLTNLQWLQLEGNRFVGEIPQSL-SKCS 316
EIP L + L+F+ +Q FS +L+ +++ N + I + S
Sbjct: 23 EIPSDLPRNAIELRFVLTKLRVIQKGAFS---GFGDLEKIEISQNDVLEVIEADVFSNLP 79
Query: 317 SLEGLYLNN-NSLLGKIPRWLGNLTRLQYIIMPNNHLEGPIPVEFCQLDSLQ--ILDISD 373
L + + N+LL P NL LQY+++ N ++ +P + ++ SLQ +LDI D
Sbjct: 80 KLHEIRIEKANNLLYINPEAFQNLPNLQYLLISNTGIKH-LP-DVHKIHSLQKVLLDIQD 137
Query: 374 N-NISGSLPSCFHPLSIKQVHLSKNMLHGQLKRGTFFNCSSLVTLDLSYNRLNGSIPDWV 432
N NI + F LS + V L N Q FN + L L+LS N +P+ V
Sbjct: 138 NINIHTIERNSFVGLSFESVILWLNKNGIQEIHNCAFNGTQLDELNLSDNNNLEELPNDV 197
>pdb|3V44|A Chain A, Crystal Structure Of The N-Terminal Fragment Of Zebrafish
Tlr5
Length = 407
Score = 29.3 bits (64), Expect = 7.9, Method: Compositional matrix adjust.
Identities = 30/103 (29%), Positives = 42/103 (40%), Gaps = 14/103 (13%)
Query: 212 VKIGDVLPSLYVFNNSMNALDGSIPSSFGNMKFLQILDLSNNHLTGEIPEHLAVGCVNLQ 271
+K+ P L + NN+ L I +FLQ+ + N G NL+
Sbjct: 59 LKVEQQTPGLVIRNNTFRGLSSLIILKLDYNQFLQLETGAFN------------GLANLE 106
Query: 272 FLALSNNNLQGHLFSRNF--NLTNLQWLQLEGNRFVGEIPQSL 312
L L+ NL G + S NF LT+L+ L L N P S
Sbjct: 107 VLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASF 149
Score = 28.9 bits (63), Expect = 9.1, Method: Compositional matrix adjust.
Identities = 17/69 (24%), Positives = 33/69 (47%)
Query: 529 YIYQGKVLSLLSGLDLSCNKLIGHIPPQIGNLTRIQTLNLSHNNLTGSIPSTFSNLKHVE 588
+ ++G S + DLS +K+ + + T ++ L L+ N + + F L H++
Sbjct: 267 FTFKGLEASGVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNEINKIDDNAFWGLTHLK 326
Query: 589 SLDLSNNKL 597
L L N+L
Sbjct: 327 ELALDTNQL 335
>pdb|3TWI|D Chain D, Variable Lymphocyte Receptor Recognition Of The
Immunodominant Glycoprotein Of Bacillus Anthracis Spores
pdb|3TWI|E Chain E, Variable Lymphocyte Receptor Recognition Of The
Immunodominant Glycoprotein Of Bacillus Anthracis Spores
pdb|3TWI|F Chain F, Variable Lymphocyte Receptor Recognition Of The
Immunodominant Glycoprotein Of Bacillus Anthracis Spores
Length = 179
Score = 28.9 bits (63), Expect = 9.2, Method: Compositional matrix adjust.
Identities = 20/64 (31%), Positives = 35/64 (54%), Gaps = 1/64 (1%)
Query: 386 PLSIKQVHLSKNMLHGQLKRGTFFNCSSLVTLDLSYNRLNGSIPDWVDGLSQLSHLILGH 445
P + + +HL N + +L+ G F + + L L+L+ N+L D L++L+HL L
Sbjct: 39 PTTTQVLHLYINQI-TKLEPGVFDSLTQLTYLNLAVNQLTALPVGVFDKLTKLTHLALHI 97
Query: 446 NNLE 449
N L+
Sbjct: 98 NQLK 101
>pdb|1K6R|A Chain A, Structure Of The Class D Beta-Lactamase Oxa-10 In Complex
With Moxalactam
pdb|1K6R|B Chain B, Structure Of The Class D Beta-Lactamase Oxa-10 In Complex
With Moxalactam
Length = 248
Score = 28.9 bits (63), Expect = 9.8, Method: Compositional matrix adjust.
Identities = 29/130 (22%), Positives = 59/130 (45%), Gaps = 15/130 (11%)
Query: 495 PDEQFEIFFSIEGHQGFLEKQNHEIFEFTTKNIAYIYQGKVLSLLSGLDLSCNKLIGHIP 554
P F+I +I G + + K H++F++ K A + L+L + +S + I
Sbjct: 47 PASTFKIPNAIIGLETGVIKNEHQVFKWDGKPRAMKQWERDLTLRGAIQVSAVPVFQQIA 106
Query: 555 PQIGNL---TRIQTLNLSHNNLTGSIP----------STFSNLKHVESLDLSNNKLNGKI 601
++G + ++ + + N++G I S + ++ +ESL L NKL+
Sbjct: 107 REVGEVRMQKYLKKFSYGNQNISGGIDKFWLEGQLRISAVNQVEFLESLYL--NKLSASK 164
Query: 602 PHQLVELKTL 611
+QL+ + L
Sbjct: 165 ENQLIVKEAL 174
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.319 0.137 0.412
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 21,078,893
Number of Sequences: 62578
Number of extensions: 879526
Number of successful extensions: 3013
Number of sequences better than 100.0: 124
Number of HSP's better than 100.0 without gapping: 70
Number of HSP's successfully gapped in prelim test: 54
Number of HSP's that attempted gapping in prelim test: 1765
Number of HSP's gapped (non-prelim): 740
length of query: 717
length of database: 14,973,337
effective HSP length: 106
effective length of query: 611
effective length of database: 8,340,069
effective search space: 5095782159
effective search space used: 5095782159
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 55 (25.8 bits)