Query 005038
Match_columns 717
No_of_seqs 578 out of 5006
Neff 10.5
Searched_HMMs 46136
Date Thu Mar 28 17:02:46 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/005038.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/005038hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN00113 leucine-rich repeat r 100.0 2.2E-62 4.9E-67 575.8 43.6 542 19-650 69-611 (968)
2 PLN00113 leucine-rich repeat r 100.0 1.2E-57 2.7E-62 535.7 39.1 521 42-651 68-589 (968)
3 KOG4194 Membrane glycoprotein 100.0 3.1E-43 6.6E-48 348.1 8.6 372 218-669 101-492 (873)
4 KOG4194 Membrane glycoprotein 100.0 1.7E-40 3.8E-45 328.7 3.1 373 171-622 79-452 (873)
5 KOG0472 Leucine-rich repeat pr 100.0 3.5E-40 7.5E-45 312.6 -14.9 495 16-622 42-541 (565)
6 KOG0472 Leucine-rich repeat pr 100.0 1.3E-39 2.9E-44 308.6 -19.8 486 44-646 46-541 (565)
7 KOG0618 Serine/threonine phosp 100.0 1.4E-35 3.1E-40 309.7 -6.0 502 3-619 7-510 (1081)
8 KOG0618 Serine/threonine phosp 100.0 8.3E-34 1.8E-38 296.6 -6.6 486 24-622 3-489 (1081)
9 KOG0444 Cytoskeletal regulator 100.0 2.8E-33 6.2E-38 279.5 -4.6 366 144-598 6-375 (1255)
10 KOG0444 Cytoskeletal regulator 100.0 5.3E-33 1.1E-37 277.6 -2.8 382 122-592 9-393 (1255)
11 KOG4237 Extracellular matrix p 99.9 9.6E-27 2.1E-31 221.3 -3.0 272 193-488 66-350 (498)
12 KOG4237 Extracellular matrix p 99.9 1.1E-26 2.4E-31 221.0 -3.7 294 149-472 50-358 (498)
13 PLN03210 Resistant to P. syrin 99.9 1.8E-22 4E-27 237.5 27.6 340 189-596 553-904 (1153)
14 PLN03210 Resistant to P. syrin 99.9 3.4E-22 7.3E-27 235.3 27.6 342 212-622 551-906 (1153)
15 PRK15387 E3 ubiquitin-protein 99.8 3.6E-20 7.8E-25 201.7 17.8 81 538-627 383-463 (788)
16 PRK15387 E3 ubiquitin-protein 99.8 4.5E-20 9.8E-25 201.0 16.7 268 243-608 201-468 (788)
17 PRK15370 E3 ubiquitin-protein 99.7 6.3E-18 1.4E-22 185.8 11.7 116 246-377 181-296 (754)
18 PRK15370 E3 ubiquitin-protein 99.7 1.2E-17 2.6E-22 183.6 12.3 96 196-305 180-275 (754)
19 cd00116 LRR_RI Leucine-rich re 99.7 4.1E-19 8.9E-24 182.4 -1.6 84 538-621 222-319 (319)
20 cd00116 LRR_RI Leucine-rich re 99.7 1.6E-18 3.5E-23 177.9 0.0 219 311-597 76-319 (319)
21 KOG0617 Ras suppressor protein 99.7 2.3E-18 5E-23 145.4 -4.0 160 386-605 32-192 (264)
22 KOG0617 Ras suppressor protein 99.5 1E-16 2.2E-21 135.5 -4.7 156 288-449 29-186 (264)
23 PLN03150 hypothetical protein; 99.5 5.4E-14 1.2E-18 154.6 9.2 118 538-655 419-538 (623)
24 KOG0532 Leucine-rich repeat (L 99.1 2.8E-12 6.2E-17 129.1 -3.6 154 408-622 94-247 (722)
25 KOG0532 Leucine-rich repeat (L 99.1 2.2E-12 4.7E-17 130.0 -5.1 175 410-646 73-247 (722)
26 KOG1259 Nischarin, modulator o 99.1 1.8E-11 3.9E-16 113.5 0.9 60 411-473 283-342 (490)
27 PF14580 LRR_9: Leucine-rich r 99.1 4.1E-11 8.9E-16 107.3 3.1 133 15-155 15-150 (175)
28 KOG3207 Beta-tubulin folding c 99.1 3.1E-11 6.7E-16 118.1 1.0 165 40-232 118-284 (505)
29 KOG1259 Nischarin, modulator o 99.0 3.1E-11 6.8E-16 112.0 0.1 136 238-380 279-415 (490)
30 COG4886 Leucine-rich repeat (L 99.0 3.3E-10 7.2E-15 119.6 7.5 84 539-626 211-294 (394)
31 KOG3207 Beta-tubulin folding c 99.0 2.8E-11 6E-16 118.4 -0.9 211 167-377 118-339 (505)
32 KOG1909 Ran GTPase-activating 99.0 3.3E-11 7.2E-16 114.7 -1.1 137 316-472 157-310 (382)
33 COG4886 Leucine-rich repeat (L 99.0 5.7E-10 1.2E-14 117.8 8.0 102 272-377 97-199 (394)
34 KOG1909 Ran GTPase-activating 99.0 4.6E-11 9.9E-16 113.8 -0.4 138 239-376 153-310 (382)
35 PLN03150 hypothetical protein; 99.0 7.2E-10 1.6E-14 122.3 8.5 114 461-627 419-533 (623)
36 PF14580 LRR_9: Leucine-rich r 99.0 4.3E-10 9.2E-15 100.8 5.4 126 192-322 17-146 (175)
37 KOG0531 Protein phosphatase 1, 98.9 1.7E-10 3.6E-15 121.8 -0.7 246 292-628 72-324 (414)
38 PF13855 LRR_8: Leucine rich r 98.9 1E-09 2.2E-14 80.7 2.6 59 562-620 2-60 (61)
39 PF13855 LRR_8: Leucine rich r 98.8 1.3E-09 2.8E-14 80.1 2.4 61 537-597 1-61 (61)
40 KOG0531 Protein phosphatase 1, 98.8 8.3E-10 1.8E-14 116.6 -1.3 218 314-622 70-290 (414)
41 KOG4658 Apoptotic ATPase [Sign 98.8 6.7E-09 1.4E-13 117.0 5.5 59 535-593 768-827 (889)
42 KOG4658 Apoptotic ATPase [Sign 98.8 8.4E-09 1.8E-13 116.2 6.2 288 170-467 523-826 (889)
43 KOG2120 SCF ubiquitin ligase, 98.6 7.2E-10 1.6E-14 103.1 -6.5 86 146-231 186-272 (419)
44 KOG2120 SCF ubiquitin ligase, 98.5 3.3E-09 7.3E-14 98.8 -4.9 221 148-374 139-373 (419)
45 KOG1859 Leucine-rich repeat pr 98.5 3.2E-09 7E-14 110.4 -6.0 124 520-649 169-295 (1096)
46 KOG2982 Uncharacterized conser 98.4 5.8E-08 1.3E-12 90.7 0.4 82 195-276 200-287 (418)
47 KOG2982 Uncharacterized conser 98.3 1.7E-07 3.7E-12 87.6 1.1 207 243-449 45-262 (418)
48 KOG4579 Leucine-rich repeat (L 98.3 5.4E-08 1.2E-12 80.1 -3.2 89 538-629 78-166 (177)
49 KOG1859 Leucine-rich repeat pr 98.2 3.3E-08 7.3E-13 103.1 -6.1 123 270-399 166-291 (1096)
50 PF12799 LRR_4: Leucine Rich r 98.1 2.7E-06 5.8E-11 56.8 3.5 40 19-60 1-40 (44)
51 COG5238 RNA1 Ran GTPase-activa 98.1 4.5E-07 9.7E-12 83.7 -0.4 21 90-110 27-47 (388)
52 KOG1644 U2-associated snRNP A' 98.1 5.7E-06 1.2E-10 73.4 5.3 110 21-158 44-153 (233)
53 COG5238 RNA1 Ran GTPase-activa 98.0 7.3E-07 1.6E-11 82.4 -0.9 113 240-353 154-285 (388)
54 KOG4341 F-box protein containi 98.0 1.5E-07 3.2E-12 92.3 -6.0 234 142-375 187-437 (483)
55 PF12799 LRR_4: Leucine Rich r 97.9 7.1E-06 1.5E-10 54.8 1.9 34 563-597 3-36 (44)
56 KOG4341 F-box protein containi 97.8 4.6E-07 1E-11 89.0 -6.1 210 119-328 215-438 (483)
57 KOG1644 U2-associated snRNP A' 97.8 4.1E-05 8.9E-10 68.1 6.4 104 197-305 22-126 (233)
58 PRK15386 type III secretion pr 97.7 8.5E-05 1.8E-09 75.4 7.5 54 411-470 51-104 (426)
59 KOG4579 Leucine-rich repeat (L 97.7 4.6E-06 1E-10 69.0 -2.0 83 538-622 54-136 (177)
60 KOG2739 Leucine-rich acidic nu 97.6 2.1E-05 4.5E-10 73.2 1.5 90 14-106 38-129 (260)
61 PF13306 LRR_5: Leucine rich r 97.6 0.00021 4.6E-09 61.9 7.0 122 238-366 7-128 (129)
62 KOG3665 ZYG-1-like serine/thre 97.5 3.9E-05 8.4E-10 84.8 2.6 87 192-282 171-264 (699)
63 KOG3665 ZYG-1-like serine/thre 97.5 2E-05 4.2E-10 87.1 0.1 154 19-177 122-282 (699)
64 PF13306 LRR_5: Leucine rich r 97.5 0.00027 5.9E-09 61.2 6.5 118 218-342 11-128 (129)
65 PRK15386 type III secretion pr 97.4 0.00045 9.7E-09 70.3 8.4 42 432-477 48-89 (426)
66 KOG2739 Leucine-rich acidic nu 96.9 0.00032 6.9E-09 65.5 1.3 86 14-100 60-150 (260)
67 KOG1947 Leucine rich repeat pr 96.8 0.00012 2.7E-09 79.9 -3.5 64 241-304 241-307 (482)
68 KOG1947 Leucine rich repeat pr 96.1 0.0007 1.5E-08 73.9 -2.6 180 91-281 186-375 (482)
69 KOG2123 Uncharacterized conser 95.8 0.00019 4.1E-09 67.1 -6.9 83 18-105 18-100 (388)
70 KOG2123 Uncharacterized conser 95.8 0.00054 1.2E-08 64.2 -4.4 94 520-615 24-123 (388)
71 PF00560 LRR_1: Leucine Rich R 94.8 0.01 2.2E-07 32.7 0.5 12 563-574 2-13 (22)
72 PF00560 LRR_1: Leucine Rich R 94.7 0.0099 2.1E-07 32.8 0.2 16 45-61 2-17 (22)
73 PF13504 LRR_7: Leucine rich r 93.7 0.037 8E-07 28.2 1.2 13 44-56 2-14 (17)
74 smart00369 LRR_TYP Leucine-ric 92.6 0.1 2.3E-06 30.0 2.1 21 43-64 2-22 (26)
75 smart00370 LRR Leucine-rich re 92.6 0.1 2.3E-06 30.0 2.1 21 43-64 2-22 (26)
76 KOG0473 Leucine-rich repeat pr 91.9 0.0026 5.7E-08 58.1 -7.8 94 9-107 32-125 (326)
77 smart00370 LRR Leucine-rich re 90.4 0.28 6E-06 28.2 2.3 14 585-598 2-15 (26)
78 smart00369 LRR_TYP Leucine-ric 90.4 0.28 6E-06 28.2 2.3 14 585-598 2-15 (26)
79 TIGR00864 PCC polycystin catio 90.3 0.17 3.7E-06 63.1 2.6 36 591-626 1-36 (2740)
80 KOG0473 Leucine-rich repeat pr 89.3 0.011 2.3E-07 54.2 -6.3 84 536-622 41-124 (326)
81 KOG4308 LRR-containing protein 88.0 0.0038 8.2E-08 66.2 -12.0 87 291-377 203-303 (478)
82 KOG3864 Uncharacterized conser 81.2 0.16 3.6E-06 45.9 -2.9 32 222-253 104-135 (221)
83 PF13516 LRR_6: Leucine Rich r 81.0 0.59 1.3E-05 26.2 0.3 14 436-449 2-15 (24)
84 KOG4308 LRR-containing protein 80.9 0.028 6E-07 59.8 -9.3 92 239-330 200-304 (478)
85 smart00365 LRR_SD22 Leucine-ri 80.4 1.6 3.4E-05 25.2 1.9 14 43-56 2-15 (26)
86 KOG3864 Uncharacterized conser 79.9 0.17 3.7E-06 45.8 -3.2 81 21-101 103-184 (221)
87 KOG4242 Predicted myosin-I-bin 74.4 19 0.00041 37.6 8.8 38 69-106 215-254 (553)
88 smart00364 LRR_BAC Leucine-ric 71.1 3 6.4E-05 24.0 1.4 13 586-598 3-15 (26)
89 TIGR00864 PCC polycystin catio 68.9 2.2 4.7E-05 54.0 1.2 58 615-672 1-77 (2740)
90 KOG4242 Predicted myosin-I-bin 68.4 29 0.00062 36.3 8.6 107 194-303 165-279 (553)
91 smart00368 LRR_RI Leucine rich 64.4 6.1 0.00013 23.2 1.9 14 585-598 2-15 (28)
92 KOG3763 mRNA export factor TAP 55.5 5.5 0.00012 42.2 1.1 62 536-599 217-284 (585)
93 PF01102 Glycophorin_A: Glycop 48.3 9.3 0.0002 32.0 1.1 9 678-686 66-74 (122)
94 PF02439 Adeno_E3_CR2: Adenovi 47.7 20 0.00044 22.7 2.2 12 681-692 10-21 (38)
95 PF08693 SKG6: Transmembrane a 44.8 4.1 8.8E-05 26.2 -1.1 13 682-694 16-28 (40)
96 PF15102 TMEM154: TMEM154 prot 43.3 7.9 0.00017 33.2 -0.0 22 685-706 66-87 (146)
97 smart00367 LRR_CC Leucine-rich 41.5 20 0.00044 20.4 1.5 11 43-53 2-12 (26)
98 KOG3763 mRNA export factor TAP 40.1 15 0.00032 39.2 1.3 63 41-107 216-284 (585)
99 PTZ00382 Variant-specific surf 37.9 7.2 0.00016 31.2 -1.0 17 685-701 73-89 (96)
100 PF15050 SCIMP: SCIMP protein 35.9 18 0.00039 29.5 0.9 26 679-704 8-33 (133)
101 PF04478 Mid2: Mid2 like cell 34.0 11 0.00025 32.5 -0.4 6 681-686 52-57 (154)
102 PF12191 stn_TNFRSF12A: Tumour 31.7 25 0.00054 29.2 1.2 22 689-710 90-111 (129)
103 PHA03099 epidermal growth fact 29.5 60 0.0013 27.1 2.9 31 685-715 107-137 (139)
104 PF07204 Orthoreo_P10: Orthore 26.8 37 0.00079 26.5 1.2 29 677-705 41-69 (98)
105 TIGR01478 STEVOR variant surfa 24.8 33 0.00071 33.1 0.8 15 691-705 271-285 (295)
106 PTZ00370 STEVOR; Provisional 24.4 34 0.00074 33.1 0.9 15 691-705 267-281 (296)
107 PF02009 Rifin_STEVOR: Rifin/s 21.6 47 0.001 33.0 1.3 10 693-702 271-280 (299)
108 PF08374 Protocadherin: Protoc 21.4 20 0.00043 33.0 -1.2 24 678-701 38-61 (221)
109 PF14991 MLANA: Protein melan- 21.1 27 0.00058 28.3 -0.4 17 697-713 42-58 (118)
No 1
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=100.00 E-value=2.2e-62 Score=575.79 Aligned_cols=542 Identities=32% Similarity=0.488 Sum_probs=431.5
Q ss_pred CCCCeeeCCCCCCCCCcchhccCCCCCCEEeCCCCCCcccCCccccCCCCCCCEEECCCCcccCcCCcccccCCCCCCEE
Q 005038 19 VHLQELYIASNDLRGSLPWCMANMTSLRILDVSSNQLTGSISSSPLVHLTSIEELMLSNNYFQIPISLEPLFNYSRLKIF 98 (717)
Q Consensus 19 ~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~i~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L 98 (717)
.+++.|+|++|.+++..+..|..+++|++|+|++|++.+.+|...+.++++|++|++++|.+++.++. ..+++|++|
T Consensus 69 ~~v~~L~L~~~~i~~~~~~~~~~l~~L~~L~Ls~n~~~~~ip~~~~~~l~~L~~L~Ls~n~l~~~~p~---~~l~~L~~L 145 (968)
T PLN00113 69 SRVVSIDLSGKNISGKISSAIFRLPYIQTINLSNNQLSGPIPDDIFTTSSSLRYLNLSNNNFTGSIPR---GSIPNLETL 145 (968)
T ss_pred CcEEEEEecCCCccccCChHHhCCCCCCEEECCCCccCCcCChHHhccCCCCCEEECcCCccccccCc---cccCCCCEE
Confidence 46777777777777666777777777777777777776666664555677777777777766654442 335556666
Q ss_pred EccCCcccccccccccccCCCccccEEEccCCCCCCCCCchhhcCCCCCCEEEccCCCCcccCChhhhhCCCCCCEEEcc
Q 005038 99 NAENNEIKAEITESHSLIAPKFQLNTLSLSSNYGDGFIFPKFLYHQHDLEYVDLSHIKMNGEFPNWLLENNTKLETLFLV 178 (717)
Q Consensus 99 ~l~~n~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~ 178 (717)
++++|.+. +.+|..++.+++|++|++++|.+.+.+|..+ .++++|++|+++
T Consensus 146 ~Ls~n~~~----------------------------~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~-~~l~~L~~L~L~ 196 (968)
T PLN00113 146 DLSNNMLS----------------------------GEIPNDIGSFSSLKVLDLGGNVLVGKIPNSL-TNLTSLEFLTLA 196 (968)
T ss_pred ECcCCccc----------------------------ccCChHHhcCCCCCEEECccCcccccCChhh-hhCcCCCeeecc
Confidence 65555443 3456666677777777777777776666664 667777777777
Q ss_pred CCcCcccCccCcCCCCCcCEEEccCCcCCccCCccccccCCCCcEEECCCCCCCccCCccccCCCCCCEEEccCCccccc
Q 005038 179 NDSLAGPFRLPIHSHKRLRQLDVSNNNIRGHIPVKIGDVLPSLYVFNNSMNALDGSIPSSFGNMKFLQILDLSNNHLTGE 258 (717)
Q Consensus 179 ~n~~~~~~~~~~~~~~~L~~L~ls~n~i~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~ 258 (717)
+|.+.+..|..++.+++|++|++++|.+++.+|..+.. +++|++|++++|.+.+.+|..+.++++|++|++++|.+.+.
T Consensus 197 ~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~-l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~ 275 (968)
T PLN00113 197 SNQLVGQIPRELGQMKSLKWIYLGYNNLSGEIPYEIGG-LTSLNHLDLVYNNLTGPIPSSLGNLKNLQYLFLYQNKLSGP 275 (968)
T ss_pred CCCCcCcCChHHcCcCCccEEECcCCccCCcCChhHhc-CCCCCEEECcCceeccccChhHhCCCCCCEEECcCCeeecc
Confidence 77777777777777777777777777777666666544 67777777777777777777777788888888888877766
Q ss_pred cchhhhhCCCCCCEEEccCcccCccCcccccCCCCCCeEECcCCcCcccCcccccCCCCCCEEEccCCcCcCcCCcccCC
Q 005038 259 IPEHLAVGCVNLQFLALSNNNLQGHLFSRNFNLTNLQWLQLEGNRFVGEIPQSLSKCSSLEGLYLNNNSLLGKIPRWLGN 338 (717)
Q Consensus 259 ~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~ 338 (717)
+|..+. .+++|++|++++|.+.+..|..+.++++|++|++++|.+.+..|..+..+++|+.|++++|.+.+..|..+..
T Consensus 276 ~p~~l~-~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~ 354 (968)
T PLN00113 276 IPPSIF-SLQKLISLDLSDNSLSGEIPELVIQLQNLEILHLFSNNFTGKIPVALTSLPRLQVLQLWSNKFSGEIPKNLGK 354 (968)
T ss_pred CchhHh-hccCcCEEECcCCeeccCCChhHcCCCCCcEEECCCCccCCcCChhHhcCCCCCEEECcCCCCcCcCChHHhC
Confidence 776665 4777888888888777777777777788888888888877777777777888888888888877777777777
Q ss_pred CCCCCEEEccCCcccCCcccccCCCCCCCEEEccCCcCcccCCCccc-cccccEEeccCcccccccCccccCCCCcCCEE
Q 005038 339 LTRLQYIIMPNNHLEGPIPVEFCQLDSLQILDISDNNISGSLPSCFH-PLSIKQVHLSKNMLHGQLKRGTFFNCSSLVTL 417 (717)
Q Consensus 339 l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~-~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L 417 (717)
+++|+.|++++|.+.+..|..++.+++|+.|++++|.+.+..|..+. +++|+.|++++|.+.+.++.. |..++.|+.|
T Consensus 355 ~~~L~~L~Ls~n~l~~~~p~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~L~~L~L~~n~l~~~~p~~-~~~l~~L~~L 433 (968)
T PLN00113 355 HNNLTVLDLSTNNLTGEIPEGLCSSGNLFKLILFSNSLEGEIPKSLGACRSLRRVRLQDNSFSGELPSE-FTKLPLVYFL 433 (968)
T ss_pred CCCCcEEECCCCeeEeeCChhHhCcCCCCEEECcCCEecccCCHHHhCCCCCCEEECcCCEeeeECChh-HhcCCCCCEE
Confidence 78888888888887777777777777888888888887776666544 667888888888877766655 8889999999
Q ss_pred eCCCCcCCcccchhhhCCCCCcEEEcCCCccccccchhccCCCCCCEEEccCCcCccCCCcccccccccccccCCCCCCc
Q 005038 418 DLSYNRLNGSIPDWVDGLSQLSHLILGHNNLEGEVSVQLCELNQLQLLDLSNNNLHGPIPPCFDNTTLHESYSNSSSPDE 497 (717)
Q Consensus 418 ~L~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~~~~~~~ 497 (717)
++++|.+.+..+..+..+++|+.|++++|++.+..|..+ ..++|+.|++++|++++..|..+..+
T Consensus 434 ~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~p~~~-~~~~L~~L~ls~n~l~~~~~~~~~~l-------------- 498 (968)
T PLN00113 434 DISNNNLQGRINSRKWDMPSLQMLSLARNKFFGGLPDSF-GSKRLENLDLSRNQFSGAVPRKLGSL-------------- 498 (968)
T ss_pred ECcCCcccCccChhhccCCCCcEEECcCceeeeecCccc-ccccceEEECcCCccCCccChhhhhh--------------
Confidence 999999999999888899999999999999998887765 56899999999999998888766543
Q ss_pred chhhhhhcccccccccccccceEEEeeccceeeeccccccccceeeCCCCccCCCCcccccCCccCCeEeCCCcccCCCC
Q 005038 498 QFEIFFSIEGHQGFLEKQNHEIFEFTTKNIAYIYQGKVLSLLSGLDLSCNKLIGHIPPQIGNLTRIQTLNLSHNNLTGSI 577 (717)
Q Consensus 498 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~ 577 (717)
++|+.|++++|++.+.+|..+..+++|++|+|++|.+++.+
T Consensus 499 ---------------------------------------~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~ 539 (968)
T PLN00113 499 ---------------------------------------SELMQLKLSENKLSGEIPDELSSCKKLVSLDLSHNQLSGQI 539 (968)
T ss_pred ---------------------------------------hccCEEECcCCcceeeCChHHcCccCCCEEECCCCcccccC
Confidence 37999999999999999999999999999999999999999
Q ss_pred CcCCCCCCCCCEEECCCCcCCccCchhhcCCCCCCEEeccCCcCeecCCCCCcccCCCCcccccCCcCCCCCC
Q 005038 578 PSTFSNLKHVESLDLSNNKLNGKIPHQLVELKTLEVFSVAYNNLSGEIPEWKAQFATFNESSYEGNTFLCGLP 650 (717)
Q Consensus 578 p~~~~~l~~L~~L~L~~N~i~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~~~~l~~~~~~~n~~~c~~~ 650 (717)
|..|..+++|+.|+|++|++++.+|..+..+++|+.|++++|++.+.+|.. +++.++....+.|||.+|+.+
T Consensus 540 p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~l~ls~N~l~~~~p~~-~~~~~~~~~~~~~n~~lc~~~ 611 (968)
T PLN00113 540 PASFSEMPVLSQLDLSQNQLSGEIPKNLGNVESLVQVNISHNHLHGSLPST-GAFLAINASAVAGNIDLCGGD 611 (968)
T ss_pred ChhHhCcccCCEEECCCCcccccCChhHhcCcccCEEeccCCcceeeCCCc-chhcccChhhhcCCccccCCc
Confidence 999999999999999999999999999999999999999999999999985 678889999999999999865
No 2
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=100.00 E-value=1.2e-57 Score=535.70 Aligned_cols=521 Identities=33% Similarity=0.510 Sum_probs=475.7
Q ss_pred CCCCCEEeCCCCCCcccCCccccCCCCCCCEEECCCCcccCcCCcccccCCCCCCEEEccCCcccccccccccccCCCcc
Q 005038 42 MTSLRILDVSSNQLTGSISSSPLVHLTSIEELMLSNNYFQIPISLEPLFNYSRLKIFNAENNEIKAEITESHSLIAPKFQ 121 (717)
Q Consensus 42 l~~L~~L~Ls~n~i~~~i~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~ 121 (717)
..+++.|||++|.+.+.++. .+..+++|++|++++|.+.+.++...+..+++|++|++++|.+.+..+
T Consensus 68 ~~~v~~L~L~~~~i~~~~~~-~~~~l~~L~~L~Ls~n~~~~~ip~~~~~~l~~L~~L~Ls~n~l~~~~p----------- 135 (968)
T PLN00113 68 SSRVVSIDLSGKNISGKISS-AIFRLPYIQTINLSNNQLSGPIPDDIFTTSSSLRYLNLSNNNFTGSIP----------- 135 (968)
T ss_pred CCcEEEEEecCCCccccCCh-HHhCCCCCCEEECCCCccCCcCChHHhccCCCCCEEECcCCccccccC-----------
Confidence 35799999999999987776 889999999999999999887887666688999999998887753221
Q ss_pred ccEEEccCCCCCCCCCchhhcCCCCCCEEEccCCCCcccCChhhhhCCCCCCEEEccCCcCcccCccCcCCCCCcCEEEc
Q 005038 122 LNTLSLSSNYGDGFIFPKFLYHQHDLEYVDLSHIKMNGEFPNWLLENNTKLETLFLVNDSLAGPFRLPIHSHKRLRQLDV 201 (717)
Q Consensus 122 L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l 201 (717)
. ..+++|++|++++|.+.+.+|..+ .++++|++|++++|.+.+..|..+..+++|++|++
T Consensus 136 -----------------~--~~l~~L~~L~Ls~n~~~~~~p~~~-~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L 195 (968)
T PLN00113 136 -----------------R--GSIPNLETLDLSNNMLSGEIPNDI-GSFSSLKVLDLGGNVLVGKIPNSLTNLTSLEFLTL 195 (968)
T ss_pred -----------------c--cccCCCCEEECcCCcccccCChHH-hcCCCCCEEECccCcccccCChhhhhCcCCCeeec
Confidence 1 235789999999999998888875 78999999999999999999999999999999999
Q ss_pred cCCcCCccCCccccccCCCCcEEECCCCCCCccCCccccCCCCCCEEEccCCccccccchhhhhCCCCCCEEEccCcccC
Q 005038 202 SNNNIRGHIPVKIGDVLPSLYVFNNSMNALDGSIPSSFGNMKFLQILDLSNNHLTGEIPEHLAVGCVNLQFLALSNNNLQ 281 (717)
Q Consensus 202 s~n~i~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~L~~L~L~~n~i~ 281 (717)
++|.+++.+|..+.. +++|++|++++|.+.+.+|..+.++++|++|++++|.+.+.+|..+. .+++|++|++++|.+.
T Consensus 196 ~~n~l~~~~p~~l~~-l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~-~l~~L~~L~L~~n~l~ 273 (968)
T PLN00113 196 ASNQLVGQIPRELGQ-MKSLKWIYLGYNNLSGEIPYEIGGLTSLNHLDLVYNNLTGPIPSSLG-NLKNLQYLFLYQNKLS 273 (968)
T ss_pred cCCCCcCcCChHHcC-cCCccEEECcCCccCCcCChhHhcCCCCCEEECcCceeccccChhHh-CCCCCCEEECcCCeee
Confidence 999999888877765 78999999999999999999999999999999999999988887765 6999999999999999
Q ss_pred ccCcccccCCCCCCeEECcCCcCcccCcccccCCCCCCEEEccCCcCcCcCCcccCCCCCCCEEEccCCcccCCcccccC
Q 005038 282 GHLFSRNFNLTNLQWLQLEGNRFVGEIPQSLSKCSSLEGLYLNNNSLLGKIPRWLGNLTRLQYIIMPNNHLEGPIPVEFC 361 (717)
Q Consensus 282 ~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~ 361 (717)
+..|..+..+++|++|++++|.+.+..|..+..+++|+.|++++|.+.+..|..+..+++|+.|++++|.+.+..|..+.
T Consensus 274 ~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~ 353 (968)
T PLN00113 274 GPIPPSIFSLQKLISLDLSDNSLSGEIPELVIQLQNLEILHLFSNNFTGKIPVALTSLPRLQVLQLWSNKFSGEIPKNLG 353 (968)
T ss_pred ccCchhHhhccCcCEEECcCCeeccCCChhHcCCCCCcEEECCCCccCCcCChhHhcCCCCCEEECcCCCCcCcCChHHh
Confidence 88999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCEEEccCCcCcccCCCccc-cccccEEeccCcccccccCccccCCCCcCCEEeCCCCcCCcccchhhhCCCCCcE
Q 005038 362 QLDSLQILDISDNNISGSLPSCFH-PLSIKQVHLSKNMLHGQLKRGTFFNCSSLVTLDLSYNRLNGSIPDWVDGLSQLSH 440 (717)
Q Consensus 362 ~l~~L~~L~l~~n~~~~~~~~~~~-~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~~~~l~~L~~ 440 (717)
.+++|+.|++++|++.+..|..+. ..+++.+++++|.+.+.++.. +..+++|+.|++++|.+++..|..+..+++|+.
T Consensus 354 ~~~~L~~L~Ls~n~l~~~~p~~~~~~~~L~~L~l~~n~l~~~~p~~-~~~~~~L~~L~L~~n~l~~~~p~~~~~l~~L~~ 432 (968)
T PLN00113 354 KHNNLTVLDLSTNNLTGEIPEGLCSSGNLFKLILFSNSLEGEIPKS-LGACRSLRRVRLQDNSFSGELPSEFTKLPLVYF 432 (968)
T ss_pred CCCCCcEEECCCCeeEeeCChhHhCcCCCCEEECcCCEecccCCHH-HhCCCCCCEEECcCCEeeeECChhHhcCCCCCE
Confidence 999999999999999988877665 678999999999998887765 889999999999999999999999999999999
Q ss_pred EEcCCCccccccchhccCCCCCCEEEccCCcCccCCCcccccccccccccCCCCCCcchhhhhhcccccccccccccceE
Q 005038 441 LILGHNNLEGEVSVQLCELNQLQLLDLSNNNLHGPIPPCFDNTTLHESYSNSSSPDEQFEIFFSIEGHQGFLEKQNHEIF 520 (717)
Q Consensus 441 L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 520 (717)
|++++|++++..+..+..+++|+.|++++|++.+..|..+.
T Consensus 433 L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~p~~~~--------------------------------------- 473 (968)
T PLN00113 433 LDISNNNLQGRINSRKWDMPSLQMLSLARNKFFGGLPDSFG--------------------------------------- 473 (968)
T ss_pred EECcCCcccCccChhhccCCCCcEEECcCceeeeecCcccc---------------------------------------
Confidence 99999999999998889999999999999999877775432
Q ss_pred EEeeccceeeeccccccccceeeCCCCccCCCCcccccCCccCCeEeCCCcccCCCCCcCCCCCCCCCEEECCCCcCCcc
Q 005038 521 EFTTKNIAYIYQGKVLSLLSGLDLSCNKLIGHIPPQIGNLTRIQTLNLSHNNLTGSIPSTFSNLKHVESLDLSNNKLNGK 600 (717)
Q Consensus 521 ~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~N~i~~~ 600 (717)
.++|+.|++++|++.+..|..+.++++|++|+|++|.+.+.+|+.+.++++|++|+|++|.+++.
T Consensus 474 ---------------~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~ 538 (968)
T PLN00113 474 ---------------SKRLENLDLSRNQFSGAVPRKLGSLSELMQLKLSENKLSGEIPDELSSCKKLVSLDLSHNQLSGQ 538 (968)
T ss_pred ---------------cccceEEECcCCccCCccChhhhhhhccCEEECcCCcceeeCChHHcCccCCCEEECCCCccccc
Confidence 13699999999999999999999999999999999999999999999999999999999999999
Q ss_pred CchhhcCCCCCCEEeccCCcCeecCCCCCcccCCCCcccccCCcCCCCCCC
Q 005038 601 IPHQLVELKTLEVFSVAYNNLSGEIPEWKAQFATFNESSYEGNTFLCGLPL 651 (717)
Q Consensus 601 ~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~~~~l~~~~~~~n~~~c~~~l 651 (717)
+|..+..+++|+.|++++|++++.+|..+..+..++.+.+.+|+..+..|.
T Consensus 539 ~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~l~ls~N~l~~~~p~ 589 (968)
T PLN00113 539 IPASFSEMPVLSQLDLSQNQLSGEIPKNLGNVESLVQVNISHNHLHGSLPS 589 (968)
T ss_pred CChhHhCcccCCEEECCCCcccccCChhHhcCcccCEEeccCCcceeeCCC
Confidence 999999999999999999999999999988999999999999998876653
No 3
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=100.00 E-value=3.1e-43 Score=348.11 Aligned_cols=372 Identities=25% Similarity=0.307 Sum_probs=257.6
Q ss_pred CCCCcEEECCCCCCCccCCccccCCCCCCEEEccCCccccccchhhhhCCCCCCEEEccCcccCccCcccccCCCCCCeE
Q 005038 218 LPSLYVFNNSMNALDGSIPSSFGNMKFLQILDLSNNHLTGEIPEHLAVGCVNLQFLALSNNNLQGHLFSRNFNLTNLQWL 297 (717)
Q Consensus 218 l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L 297 (717)
+++|+.+++..|.++ .+|.......+|+.|+|.+|.|+ .+.......++.|+.||||.|.|+.+....|..-.++++|
T Consensus 101 l~nLq~v~l~~N~Lt-~IP~f~~~sghl~~L~L~~N~I~-sv~se~L~~l~alrslDLSrN~is~i~~~sfp~~~ni~~L 178 (873)
T KOG4194|consen 101 LPNLQEVNLNKNELT-RIPRFGHESGHLEKLDLRHNLIS-SVTSEELSALPALRSLDLSRNLISEIPKPSFPAKVNIKKL 178 (873)
T ss_pred CCcceeeeeccchhh-hcccccccccceeEEeeeccccc-cccHHHHHhHhhhhhhhhhhchhhcccCCCCCCCCCceEE
Confidence 444444444444443 33333333334445555555444 3333333334445555555554444433444444445555
Q ss_pred ECcCCcCcccCcccccCCCCCCEEEccCCcCcCcCCcccCCCCCCCEEEccCCcccCCcccccCCCCCCCEEEccCCcCc
Q 005038 298 QLEGNRFVGEIPQSLSKCSSLEGLYLNNNSLLGKIPRWLGNLTRLQYIIMPNNHLEGPIPVEFCQLDSLQILDISDNNIS 377 (717)
Q Consensus 298 ~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~ 377 (717)
+|++|+|+....+.|..+.+|..|.|++|+++...+..|.++++|+.|+|..|++....--.|.++++|+.|.+..|.+.
T Consensus 179 ~La~N~It~l~~~~F~~lnsL~tlkLsrNrittLp~r~Fk~L~~L~~LdLnrN~irive~ltFqgL~Sl~nlklqrN~I~ 258 (873)
T KOG4194|consen 179 NLASNRITTLETGHFDSLNSLLTLKLSRNRITTLPQRSFKRLPKLESLDLNRNRIRIVEGLTFQGLPSLQNLKLQRNDIS 258 (873)
T ss_pred eeccccccccccccccccchheeeecccCcccccCHHHhhhcchhhhhhccccceeeehhhhhcCchhhhhhhhhhcCcc
Confidence 55555555444444555555555555555554333344444555555555555544322334445555555555444443
Q ss_pred ccCCCccccccccEEeccCcccccccCccccCCCCcCCEEeCCCCcCCcccchhhhCCCCCcEEEcCCCccccccchhcc
Q 005038 378 GSLPSCFHPLSIKQVHLSKNMLHGQLKRGTFFNCSSLVTLDLSYNRLNGSIPDWVDGLSQLSHLILGHNNLEGEVSVQLC 457 (717)
Q Consensus 378 ~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~ 457 (717)
.+..++|..+.++++|+|+.|++...-.+|+-++++|+.|+++.|.|..+.+..+.
T Consensus 259 ------------------------kL~DG~Fy~l~kme~l~L~~N~l~~vn~g~lfgLt~L~~L~lS~NaI~rih~d~Ws 314 (873)
T KOG4194|consen 259 ------------------------KLDDGAFYGLEKMEHLNLETNRLQAVNEGWLFGLTSLEQLDLSYNAIQRIHIDSWS 314 (873)
T ss_pred ------------------------cccCcceeeecccceeecccchhhhhhcccccccchhhhhccchhhhheeecchhh
Confidence 45667799999999999999999988888999999999999999999999999999
Q ss_pred CCCCCCEEEccCCcCccCCCcccccccccccccCCCCCCcchhhhhhcccccccccccccceEEEeeccceeeecccccc
Q 005038 458 ELNQLQLLDLSNNNLHGPIPPCFDNTTLHESYSNSSSPDEQFEIFFSIEGHQGFLEKQNHEIFEFTTKNIAYIYQGKVLS 537 (717)
Q Consensus 458 ~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 537 (717)
..++|++|+|++|+|+...+.+|..+.
T Consensus 315 ftqkL~~LdLs~N~i~~l~~~sf~~L~----------------------------------------------------- 341 (873)
T KOG4194|consen 315 FTQKLKELDLSSNRITRLDEGSFRVLS----------------------------------------------------- 341 (873)
T ss_pred hcccceeEeccccccccCChhHHHHHH-----------------------------------------------------
Confidence 999999999999999887777765543
Q ss_pred ccceeeCCCCccCCCCcccccCCccCCeEeCCCcccCCCCCc---CCCCCCCCCEEECCCCcCCccCchhhcCCCCCCEE
Q 005038 538 LLSGLDLSCNKLIGHIPPQIGNLTRIQTLNLSHNNLTGSIPS---TFSNLKHVESLDLSNNKLNGKIPHQLVELKTLEVF 614 (717)
Q Consensus 538 ~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~---~~~~l~~L~~L~L~~N~i~~~~p~~~~~l~~L~~L 614 (717)
.|++|+|++|.+...-...|..+++|++|||++|.++..+.+ .|.++++|++|++.+|++..+.-.+|.++.+|+.|
T Consensus 342 ~Le~LnLs~Nsi~~l~e~af~~lssL~~LdLr~N~ls~~IEDaa~~f~gl~~LrkL~l~gNqlk~I~krAfsgl~~LE~L 421 (873)
T KOG4194|consen 342 QLEELNLSHNSIDHLAEGAFVGLSSLHKLDLRSNELSWCIEDAAVAFNGLPSLRKLRLTGNQLKSIPKRAFSGLEALEHL 421 (873)
T ss_pred HhhhhcccccchHHHHhhHHHHhhhhhhhcCcCCeEEEEEecchhhhccchhhhheeecCceeeecchhhhccCccccee
Confidence 799999999999877777899999999999999999876654 47889999999999999996666799999999999
Q ss_pred eccCCcCeecCCCCCcccCCCCcccccCCcCCCCCCCC-----------------CCCCCCCCCCCCCCCCC
Q 005038 615 SVAYNNLSGEIPEWKAQFATFNESSYEGNTFLCGLPLP-----------------ICRSPATMPEASIGNEQ 669 (717)
Q Consensus 615 ~l~~N~l~~~~p~~~~~~~~l~~~~~~~n~~~c~~~l~-----------------~C~~~~~~~~~~~~~~~ 669 (717)
||.+|.|...-|..|..+ .++++.+..-.++|+|.+. +|.+|+...++.+...+
T Consensus 422 dL~~NaiaSIq~nAFe~m-~Lk~Lv~nSssflCDCql~Wl~qWl~~~~lq~sv~a~CayPe~Lad~~i~svd 492 (873)
T KOG4194|consen 422 DLGDNAIASIQPNAFEPM-ELKELVMNSSSFLCDCQLKWLAQWLYRRKLQSSVIAKCAYPEPLADQSIVSVD 492 (873)
T ss_pred cCCCCcceeecccccccc-hhhhhhhcccceEEeccHHHHHHHHHhcccccceeeeccCCcccccceeEeec
Confidence 999999998888888888 8888888888999999763 39999988776554433
No 4
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=100.00 E-value=1.7e-40 Score=328.67 Aligned_cols=373 Identities=24% Similarity=0.260 Sum_probs=264.6
Q ss_pred CCCEEEccCCcCcccCccCcCCCCCcCEEEccCCcCCccCCccccccCCCCcEEECCCCCCCccCCccccCCCCCCEEEc
Q 005038 171 KLETLFLVNDSLAGPFRLPIHSHKRLRQLDVSNNNIRGHIPVKIGDVLPSLYVFNNSMNALDGSIPSSFGNMKFLQILDL 250 (717)
Q Consensus 171 ~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~ls~n~i~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~L 250 (717)
.-+.|++++|.+....+..|.++++|+++.+..|.++ .+|.... ....++.|++.+|.|+..-.+++..++.|++|||
T Consensus 79 ~t~~LdlsnNkl~~id~~~f~nl~nLq~v~l~~N~Lt-~IP~f~~-~sghl~~L~L~~N~I~sv~se~L~~l~alrslDL 156 (873)
T KOG4194|consen 79 QTQTLDLSNNKLSHIDFEFFYNLPNLQEVNLNKNELT-RIPRFGH-ESGHLEKLDLRHNLISSVTSEELSALPALRSLDL 156 (873)
T ss_pred ceeeeeccccccccCcHHHHhcCCcceeeeeccchhh-hcccccc-cccceeEEeeeccccccccHHHHHhHhhhhhhhh
Confidence 4577999999998888888889999999999999987 7775443 3567999999999998888888999999999999
Q ss_pred cCCccccccchhhhhCCCCCCEEEccCcccCccCcccccCCCCCCeEECcCCcCcccCcccccCCCCCCEEEccCCcCcC
Q 005038 251 SNNHLTGEIPEHLAVGCVNLQFLALSNNNLQGHLFSRNFNLTNLQWLQLEGNRFVGEIPQSLSKCSSLEGLYLNNNSLLG 330 (717)
Q Consensus 251 s~n~l~~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~ 330 (717)
|.|.|+ ++|...+..-.++++|+|++|+|+......|.++.+|..|.|+.|+++...+..|..+++|+.|+|..|++.-
T Consensus 157 SrN~is-~i~~~sfp~~~ni~~L~La~N~It~l~~~~F~~lnsL~tlkLsrNrittLp~r~Fk~L~~L~~LdLnrN~iri 235 (873)
T KOG4194|consen 157 SRNLIS-EIPKPSFPAKVNIKKLNLASNRITTLETGHFDSLNSLLTLKLSRNRITTLPQRSFKRLPKLESLDLNRNRIRI 235 (873)
T ss_pred hhchhh-cccCCCCCCCCCceEEeeccccccccccccccccchheeeecccCcccccCHHHhhhcchhhhhhccccceee
Confidence 999998 8888777666889999999999998888999999999999999999997777888889999999999999874
Q ss_pred cCCcccCCCCCCCEEEccCCcccCCcccccCCCCCCCEEEccCCcCcccCCCcc-ccccccEEeccCcccccccCccccC
Q 005038 331 KIPRWLGNLTRLQYIIMPNNHLEGPIPVEFCQLDSLQILDISDNNISGSLPSCF-HPLSIKQVHLSKNMLHGQLKRGTFF 409 (717)
Q Consensus 331 ~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~-~~~~L~~L~l~~n~~~~~~~~~~~~ 409 (717)
.---.|.++++|+.|.+..|.+.......|..+.++++|+++.|++......+. ...+|+.|+++.|.+.. +....+.
T Consensus 236 ve~ltFqgL~Sl~nlklqrN~I~kL~DG~Fy~l~kme~l~L~~N~l~~vn~g~lfgLt~L~~L~lS~NaI~r-ih~d~Ws 314 (873)
T KOG4194|consen 236 VEGLTFQGLPSLQNLKLQRNDISKLDDGAFYGLEKMEHLNLETNRLQAVNEGWLFGLTSLEQLDLSYNAIQR-IHIDSWS 314 (873)
T ss_pred ehhhhhcCchhhhhhhhhhcCcccccCcceeeecccceeecccchhhhhhcccccccchhhhhccchhhhhe-eecchhh
Confidence 435678999999999999999998888889999999999999999875544432 24445555555554422 2222244
Q ss_pred CCCcCCEEeCCCCcCCcccchhhhCCCCCcEEEcCCCccccccchhccCCCCCCEEEccCCcCccCCCcccccccccccc
Q 005038 410 NCSSLVTLDLSYNRLNGSIPDWVDGLSQLSHLILGHNNLEGEVSVQLCELNQLQLLDLSNNNLHGPIPPCFDNTTLHESY 489 (717)
Q Consensus 410 ~~~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~ 489 (717)
-+++|++|+|++|+++...++.|..+..|++|+|++|.++......|..+.+|++|||++|.++..+.+
T Consensus 315 ftqkL~~LdLs~N~i~~l~~~sf~~L~~Le~LnLs~Nsi~~l~e~af~~lssL~~LdLr~N~ls~~IED----------- 383 (873)
T KOG4194|consen 315 FTQKLKELDLSSNRITRLDEGSFRVLSQLEELNLSHNSIDHLAEGAFVGLSSLHKLDLRSNELSWCIED----------- 383 (873)
T ss_pred hcccceeEeccccccccCChhHHHHHHHhhhhcccccchHHHHhhHHHHhhhhhhhcCcCCeEEEEEec-----------
Confidence 445555555555555544444555555555555555555544444444555555555555544332211
Q ss_pred cCCCCCCcchhhhhhcccccccccccccceEEEeeccceeeeccccccccceeeCCCCccCCCCcccccCCccCCeEeCC
Q 005038 490 SNSSSPDEQFEIFFSIEGHQGFLEKQNHEIFEFTTKNIAYIYQGKVLSLLSGLDLSCNKLIGHIPPQIGNLTRIQTLNLS 569 (717)
Q Consensus 490 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls 569 (717)
....|.++++|+.|++.
T Consensus 384 ---------------------------------------------------------------aa~~f~gl~~LrkL~l~ 400 (873)
T KOG4194|consen 384 ---------------------------------------------------------------AAVAFNGLPSLRKLRLT 400 (873)
T ss_pred ---------------------------------------------------------------chhhhccchhhhheeec
Confidence 12235556666666666
Q ss_pred CcccCCCCCcCCCCCCCCCEEECCCCcCCccCchhhcCCCCCCEEeccCCcCe
Q 005038 570 HNNLTGSIPSTFSNLKHVESLDLSNNKLNGKIPHQLVELKTLEVFSVAYNNLS 622 (717)
Q Consensus 570 ~n~l~~~~p~~~~~l~~L~~L~L~~N~i~~~~p~~~~~l~~L~~L~l~~N~l~ 622 (717)
+|++..+...+|.++++|++|||.+|.|..+.|++|..+ .|+.|-+..-.+.
T Consensus 401 gNqlk~I~krAfsgl~~LE~LdL~~NaiaSIq~nAFe~m-~Lk~Lv~nSssfl 452 (873)
T KOG4194|consen 401 GNQLKSIPKRAFSGLEALEHLDLGDNAIASIQPNAFEPM-ELKELVMNSSSFL 452 (873)
T ss_pred CceeeecchhhhccCcccceecCCCCcceeecccccccc-hhhhhhhcccceE
Confidence 666664444556666666666666666665556666555 5555555444443
No 5
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=100.00 E-value=3.5e-40 Score=312.57 Aligned_cols=495 Identities=26% Similarity=0.366 Sum_probs=279.7
Q ss_pred cCCCCCCeeeCCCCCCCCCcchhccCCCCCCEEeCCCCCCcccCCccccCCCCCCCEEECCCCcccCcCCcccccCCCCC
Q 005038 16 CSLVHLQELYIASNDLRGSLPWCMANMTSLRILDVSSNQLTGSISSSPLVHLTSIEELMLSNNYFQIPISLEPLFNYSRL 95 (717)
Q Consensus 16 ~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~i~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L 95 (717)
..-.-++.|++++|.+. .+-+.+.++..|.+|++++|++. ++|+ +++.+..++.++.++|.+. ..| ..+..+.+|
T Consensus 42 W~qv~l~~lils~N~l~-~l~~dl~nL~~l~vl~~~~n~l~-~lp~-aig~l~~l~~l~vs~n~ls-~lp-~~i~s~~~l 116 (565)
T KOG0472|consen 42 WEQVDLQKLILSHNDLE-VLREDLKNLACLTVLNVHDNKLS-QLPA-AIGELEALKSLNVSHNKLS-ELP-EQIGSLISL 116 (565)
T ss_pred hhhcchhhhhhccCchh-hccHhhhcccceeEEEeccchhh-hCCH-HHHHHHHHHHhhcccchHh-hcc-HHHhhhhhh
Confidence 33345566666666666 33445566666666666666666 5665 5666666666666666655 233 344555556
Q ss_pred CEEEccCCcccccccccccccCCCccccEEEccCCCCCCCCCchhhcCCCCCCEEEccCCCCcccCChhhhhCCCCCCEE
Q 005038 96 KIFNAENNEIKAEITESHSLIAPKFQLNTLSLSSNYGDGFIFPKFLYHQHDLEYVDLSHIKMNGEFPNWLLENNTKLETL 175 (717)
Q Consensus 96 ~~L~l~~n~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L 175 (717)
+.+++++|.+. ..+..++.+..++.++..+|+++ ..|..+ .++.++..+
T Consensus 117 ~~l~~s~n~~~-----------------------------el~~~i~~~~~l~dl~~~~N~i~-slp~~~-~~~~~l~~l 165 (565)
T KOG0472|consen 117 VKLDCSSNELK-----------------------------ELPDSIGRLLDLEDLDATNNQIS-SLPEDM-VNLSKLSKL 165 (565)
T ss_pred hhhhcccccee-----------------------------ecCchHHHHhhhhhhhccccccc-cCchHH-HHHHHHHHh
Confidence 66665555443 23445555556666666666665 455543 455555555
Q ss_pred EccCCcCcccCccCcCCCCCcCEEEccCCcCCccCCccccccCCCCcEEECCCCCCCccCCccccCCCCCCEEEccCCcc
Q 005038 176 FLVNDSLAGPFRLPIHSHKRLRQLDVSNNNIRGHIPVKIGDVLPSLYVFNNSMNALDGSIPSSFGNMKFLQILDLSNNHL 255 (717)
Q Consensus 176 ~l~~n~~~~~~~~~~~~~~~L~~L~ls~n~i~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~Ls~n~l 255 (717)
++.+|++....+..+. ++.|++||...|-++ .+|..++. +.+|..|++..|++. .+| .|..+..|..+.++.|.|
T Consensus 166 ~~~~n~l~~l~~~~i~-m~~L~~ld~~~N~L~-tlP~~lg~-l~~L~~LyL~~Nki~-~lP-ef~gcs~L~Elh~g~N~i 240 (565)
T KOG0472|consen 166 DLEGNKLKALPENHIA-MKRLKHLDCNSNLLE-TLPPELGG-LESLELLYLRRNKIR-FLP-EFPGCSLLKELHVGENQI 240 (565)
T ss_pred hccccchhhCCHHHHH-HHHHHhcccchhhhh-cCChhhcc-hhhhHHHHhhhcccc-cCC-CCCccHHHHHHHhcccHH
Confidence 5555555544433333 555666666555554 55555544 445555555555554 334 455555555555555555
Q ss_pred ccccchhhhhCCCCCCEEEccCcccCccCcccccCCCCCCeEECcCCcCcccCcccccCCCCCCEEEccCCcCcCcCCcc
Q 005038 256 TGEIPEHLAVGCVNLQFLALSNNNLQGHLFSRNFNLTNLQWLQLEGNRFVGEIPQSLSKCSSLEGLYLNNNSLLGKIPRW 335 (717)
Q Consensus 256 ~~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~ 335 (717)
. .+|+.....+.++..||+..|+++ ..|+.+.-+.+|++||+++|.++ ..|..++++ .|+.|-+.+|++...-.+.
T Consensus 241 ~-~lpae~~~~L~~l~vLDLRdNklk-e~Pde~clLrsL~rLDlSNN~is-~Lp~sLgnl-hL~~L~leGNPlrTiRr~i 316 (565)
T KOG0472|consen 241 E-MLPAEHLKHLNSLLVLDLRDNKLK-EVPDEICLLRSLERLDLSNNDIS-SLPYSLGNL-HLKFLALEGNPLRTIRREI 316 (565)
T ss_pred H-hhHHHHhcccccceeeeccccccc-cCchHHHHhhhhhhhcccCCccc-cCCcccccc-eeeehhhcCCchHHHHHHH
Confidence 5 555555555555555555555554 34455555555555555555555 334445555 5555555555543111110
Q ss_pred cCCC--CCCCEEEccCCcccCCcccccCCCCCCCEEEccCCcCcccCCCccccccccEEeccCcccccccCccccCCCC-
Q 005038 336 LGNL--TRLQYIIMPNNHLEGPIPVEFCQLDSLQILDISDNNISGSLPSCFHPLSIKQVHLSKNMLHGQLKRGTFFNCS- 412 (717)
Q Consensus 336 ~~~l--~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~- 412 (717)
+..- .-|++|.= .++ .+.+..-..=+.= ......+..+......+.+.|++++-++ ..+|...|....
T Consensus 317 i~~gT~~vLKyLrs---~~~---~dglS~se~~~e~--~~t~~~~~~~~~~~~i~tkiL~~s~~ql-t~VPdEVfea~~~ 387 (565)
T KOG0472|consen 317 ISKGTQEVLKYLRS---KIK---DDGLSQSEGGTET--AMTLPSESFPDIYAIITTKILDVSDKQL-TLVPDEVFEAAKS 387 (565)
T ss_pred HcccHHHHHHHHHH---hhc---cCCCCCCcccccc--cCCCCCCcccchhhhhhhhhhccccccc-ccCCHHHHHHhhh
Confidence 0000 00110000 000 0000000000000 0000111222223344555555555555 245555454322
Q ss_pred -cCCEEeCCCCcCCcccchhhhCCCCCcE-EEcCCCccccccchhccCCCCCCEEEccCCcCccCCCccccccccccccc
Q 005038 413 -SLVTLDLSYNRLNGSIPDWVDGLSQLSH-LILGHNNLEGEVSVQLCELNQLQLLDLSNNNLHGPIPPCFDNTTLHESYS 490 (717)
Q Consensus 413 -~L~~L~L~~n~~~~~~~~~~~~l~~L~~-L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~ 490 (717)
-....+++.|++. .+|..+..+..+.+ +.+++|.+. .+|..++.+++|..|++++|.+. .+|..+..+
T Consensus 388 ~~Vt~VnfskNqL~-elPk~L~~lkelvT~l~lsnn~is-fv~~~l~~l~kLt~L~L~NN~Ln-~LP~e~~~l------- 457 (565)
T KOG0472|consen 388 EIVTSVNFSKNQLC-ELPKRLVELKELVTDLVLSNNKIS-FVPLELSQLQKLTFLDLSNNLLN-DLPEEMGSL------- 457 (565)
T ss_pred cceEEEecccchHh-hhhhhhHHHHHHHHHHHhhcCccc-cchHHHHhhhcceeeecccchhh-hcchhhhhh-------
Confidence 2667888888887 45665655555443 445555554 77888888888888888888765 334333322
Q ss_pred CCCCCCcchhhhhhcccccccccccccceEEEeeccceeeeccccccccceeeCCCCccCCCCcccccCCccCCeEeCCC
Q 005038 491 NSSSPDEQFEIFFSIEGHQGFLEKQNHEIFEFTTKNIAYIYQGKVLSLLSGLDLSCNKLIGHIPPQIGNLTRIQTLNLSH 570 (717)
Q Consensus 491 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~ 570 (717)
..|+.||+++|++. ..|.++..+..++.+-.++
T Consensus 458 ----------------------------------------------v~Lq~LnlS~NrFr-~lP~~~y~lq~lEtllas~ 490 (565)
T KOG0472|consen 458 ----------------------------------------------VRLQTLNLSFNRFR-MLPECLYELQTLETLLASN 490 (565)
T ss_pred ----------------------------------------------hhhheecccccccc-cchHHHhhHHHHHHHHhcc
Confidence 25888888888887 6788877777888888888
Q ss_pred cccCCCCCcCCCCCCCCCEEECCCCcCCccCchhhcCCCCCCEEeccCCcCe
Q 005038 571 NNLTGSIPSTFSNLKHVESLDLSNNKLNGKIPHQLVELKTLEVFSVAYNNLS 622 (717)
Q Consensus 571 n~l~~~~p~~~~~l~~L~~L~L~~N~i~~~~p~~~~~l~~L~~L~l~~N~l~ 622 (717)
|++..+.|+.+.++.+|..|||.+|.+. .+|..++++++|++|+++||++.
T Consensus 491 nqi~~vd~~~l~nm~nL~tLDL~nNdlq-~IPp~LgnmtnL~hLeL~gNpfr 541 (565)
T KOG0472|consen 491 NQIGSVDPSGLKNMRNLTTLDLQNNDLQ-QIPPILGNMTNLRHLELDGNPFR 541 (565)
T ss_pred ccccccChHHhhhhhhcceeccCCCchh-hCChhhccccceeEEEecCCccC
Confidence 8888777777888888999999988887 67778888999999999999888
No 6
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=100.00 E-value=1.3e-39 Score=308.61 Aligned_cols=486 Identities=26% Similarity=0.376 Sum_probs=330.3
Q ss_pred CCCEEeCCCCCCcccCCccccCCCCCCCEEECCCCcccCcCCcccccCCCCCCEEEccCCcccccccccccccCCCcccc
Q 005038 44 SLRILDVSSNQLTGSISSSPLVHLTSIEELMLSNNYFQIPISLEPLFNYSRLKIFNAENNEIKAEITESHSLIAPKFQLN 123 (717)
Q Consensus 44 ~L~~L~Ls~n~i~~~i~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~L~ 123 (717)
.|+.|++++|.+. .+.+ .+.++..|.+|++++|++. ..| .+++.+..++.++.+.|++.
T Consensus 46 ~l~~lils~N~l~-~l~~-dl~nL~~l~vl~~~~n~l~-~lp-~aig~l~~l~~l~vs~n~ls----------------- 104 (565)
T KOG0472|consen 46 DLQKLILSHNDLE-VLRE-DLKNLACLTVLNVHDNKLS-QLP-AAIGELEALKSLNVSHNKLS----------------- 104 (565)
T ss_pred chhhhhhccCchh-hccH-hhhcccceeEEEeccchhh-hCC-HHHHHHHHHHHhhcccchHh-----------------
Confidence 4555555555554 3332 3555555555555555554 122 23444444444444444332
Q ss_pred EEEccCCCCCCCCCchhhcCCCCCCEEEccCCCCcccCChhhhhCCCCCCEEEccCCcCcccCccCcCCCCCcCEEEccC
Q 005038 124 TLSLSSNYGDGFIFPKFLYHQHDLEYVDLSHIKMNGEFPNWLLENNTKLETLFLVNDSLAGPFRLPIHSHKRLRQLDVSN 203 (717)
Q Consensus 124 ~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~ls~ 203 (717)
.+|..+....++..++.+.|.+. .+|+.+ +.+..++.++..+|++.. .|..+..+.+|..+++.+
T Consensus 105 ------------~lp~~i~s~~~l~~l~~s~n~~~-el~~~i-~~~~~l~dl~~~~N~i~s-lp~~~~~~~~l~~l~~~~ 169 (565)
T KOG0472|consen 105 ------------ELPEQIGSLISLVKLDCSSNELK-ELPDSI-GRLLDLEDLDATNNQISS-LPEDMVNLSKLSKLDLEG 169 (565)
T ss_pred ------------hccHHHhhhhhhhhhhcccccee-ecCchH-HHHhhhhhhhcccccccc-CchHHHHHHHHHHhhccc
Confidence 46777777888888888888887 566665 567788888888888774 466777788888888888
Q ss_pred CcCCccCCccccccCCCCcEEECCCCCCCccCCccccCCCCCCEEEccCCccccccchhhhhCCCCCCEEEccCcccCcc
Q 005038 204 NNIRGHIPVKIGDVLPSLYVFNNSMNALDGSIPSSFGNMKFLQILDLSNNHLTGEIPEHLAVGCVNLQFLALSNNNLQGH 283 (717)
Q Consensus 204 n~i~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~L~~L~L~~n~i~~~ 283 (717)
|+++ ..|..... .+.|++++...|.+. .+|..++.+.+|..|++.+|++. .+| . |.+|..|+++.++.|.|.-.
T Consensus 170 n~l~-~l~~~~i~-m~~L~~ld~~~N~L~-tlP~~lg~l~~L~~LyL~~Nki~-~lP-e-f~gcs~L~Elh~g~N~i~~l 243 (565)
T KOG0472|consen 170 NKLK-ALPENHIA-MKRLKHLDCNSNLLE-TLPPELGGLESLELLYLRRNKIR-FLP-E-FPGCSLLKELHVGENQIEML 243 (565)
T ss_pred cchh-hCCHHHHH-HHHHHhcccchhhhh-cCChhhcchhhhHHHHhhhcccc-cCC-C-CCccHHHHHHHhcccHHHhh
Confidence 8887 55555555 677888888777766 66777888888888888888887 777 2 34688888888888888743
Q ss_pred CcccccCCCCCCeEECcCCcCcccCcccccCCCCCCEEEccCCcCcCcCCcccCCCCCCCEEEccCCcccCCcccccCCC
Q 005038 284 LFSRNFNLTNLQWLQLEGNRFVGEIPQSLSKCSSLEGLYLNNNSLLGKIPRWLGNLTRLQYIIMPNNHLEGPIPVEFCQL 363 (717)
Q Consensus 284 ~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l 363 (717)
..+....++++..||+.+|+++ ..|+.+..+.+|+.||+++|.++ ..|..++++ .|+.|-+.+|.+..+-.+-+..-
T Consensus 244 pae~~~~L~~l~vLDLRdNklk-e~Pde~clLrsL~rLDlSNN~is-~Lp~sLgnl-hL~~L~leGNPlrTiRr~ii~~g 320 (565)
T KOG0472|consen 244 PAEHLKHLNSLLVLDLRDNKLK-EVPDEICLLRSLERLDLSNNDIS-SLPYSLGNL-HLKFLALEGNPLRTIRREIISKG 320 (565)
T ss_pred HHHHhcccccceeeeccccccc-cCchHHHHhhhhhhhcccCCccc-cCCcccccc-eeeehhhcCCchHHHHHHHHccc
Confidence 3344447788888888888887 66777777888888888888887 567777777 78888888877653211111110
Q ss_pred C--CCCEEE--ccCCcCcccCCCccccccccEEeccCcccccccCcc---ccCCCCcCCEEeCCCCcCCcccchhhhCC-
Q 005038 364 D--SLQILD--ISDNNISGSLPSCFHPLSIKQVHLSKNMLHGQLKRG---TFFNCSSLVTLDLSYNRLNGSIPDWVDGL- 435 (717)
Q Consensus 364 ~--~L~~L~--l~~n~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~---~~~~~~~L~~L~L~~n~~~~~~~~~~~~l- 435 (717)
+ -|++|. +....++.. .+. .- -....+.. ......+.+.|++++-+++....+.|..-
T Consensus 321 T~~vLKyLrs~~~~dglS~s-e~~----~e---------~~~t~~~~~~~~~~~~i~tkiL~~s~~qlt~VPdEVfea~~ 386 (565)
T KOG0472|consen 321 TQEVLKYLRSKIKDDGLSQS-EGG----TE---------TAMTLPSESFPDIYAIITTKILDVSDKQLTLVPDEVFEAAK 386 (565)
T ss_pred HHHHHHHHHHhhccCCCCCC-ccc----cc---------ccCCCCCCcccchhhhhhhhhhcccccccccCCHHHHHHhh
Confidence 0 011110 001111100 000 00 00011111 12344677888888888885443444321
Q ss_pred -CCCcEEEcCCCccccccchhccCCCCCCE-EEccCCcCccCCCcccccccccccccCCCCCCcchhhhhhccccccccc
Q 005038 436 -SQLSHLILGHNNLEGEVSVQLCELNQLQL-LDLSNNNLHGPIPPCFDNTTLHESYSNSSSPDEQFEIFFSIEGHQGFLE 513 (717)
Q Consensus 436 -~~L~~L~L~~n~l~~~~~~~l~~l~~L~~-L~L~~n~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 513 (717)
.-.+..+++.|++. ..|..+..+..+.+ +++++|.+ +.+|..+..
T Consensus 387 ~~~Vt~VnfskNqL~-elPk~L~~lkelvT~l~lsnn~i-sfv~~~l~~------------------------------- 433 (565)
T KOG0472|consen 387 SEIVTSVNFSKNQLC-ELPKRLVELKELVTDLVLSNNKI-SFVPLELSQ------------------------------- 433 (565)
T ss_pred hcceEEEecccchHh-hhhhhhHHHHHHHHHHHhhcCcc-ccchHHHHh-------------------------------
Confidence 23778888888888 56666666655543 44454444 344433332
Q ss_pred ccccceEEEeeccceeeeccccccccceeeCCCCccCCCCcccccCCccCCeEeCCCcccCCCCCcCCCCCCCCCEEECC
Q 005038 514 KQNHEIFEFTTKNIAYIYQGKVLSLLSGLDLSCNKLIGHIPPQIGNLTRIQTLNLSHNNLTGSIPSTFSNLKHVESLDLS 593 (717)
Q Consensus 514 ~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~ 593 (717)
++.|+.|+|++|-+. .+|..++.+..||+|+|+.|++. .+|..+..+..++.+-.+
T Consensus 434 ----------------------l~kLt~L~L~NN~Ln-~LP~e~~~lv~Lq~LnlS~NrFr-~lP~~~y~lq~lEtllas 489 (565)
T KOG0472|consen 434 ----------------------LQKLTFLDLSNNLLN-DLPEEMGSLVRLQTLNLSFNRFR-MLPECLYELQTLETLLAS 489 (565)
T ss_pred ----------------------hhcceeeecccchhh-hcchhhhhhhhhheecccccccc-cchHHHhhHHHHHHHHhc
Confidence 457999999999887 67889999999999999999999 889888888889999999
Q ss_pred CCcCCccCchhhcCCCCCCEEeccCCcCeecCCCCCcccCCCCcccccCCcCC
Q 005038 594 NNKLNGKIPHQLVELKTLEVFSVAYNNLSGEIPEWKAQFATFNESSYEGNTFL 646 (717)
Q Consensus 594 ~N~i~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~~~~l~~~~~~~n~~~ 646 (717)
+|++..+.|+.+.++.+|.+||+.+|.+. .+|..++.+++++.+.+.||||.
T Consensus 490 ~nqi~~vd~~~l~nm~nL~tLDL~nNdlq-~IPp~LgnmtnL~hLeL~gNpfr 541 (565)
T KOG0472|consen 490 NNQIGSVDPSGLKNMRNLTTLDLQNNDLQ-QIPPILGNMTNLRHLELDGNPFR 541 (565)
T ss_pred cccccccChHHhhhhhhcceeccCCCchh-hCChhhccccceeEEEecCCccC
Confidence 99999888888999999999999999999 66777899999999999999987
No 7
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=100.00 E-value=1.4e-35 Score=309.70 Aligned_cols=502 Identities=25% Similarity=0.330 Sum_probs=308.9
Q ss_pred CCCcceeeCcccccCCCCCCeeeCCCCCCCCCcchhccCCCCCCEEeCCCCCCcccCCccccCCCCCCCEEECCCCcccC
Q 005038 3 SCEVNGVVRSQGLCSLVHLQELYIASNDLRGSLPWCMANMTSLRILDVSSNQLTGSISSSPLVHLTSIEELMLSNNYFQI 82 (717)
Q Consensus 3 ~~~~~g~i~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~i~~~~~~~l~~L~~L~L~~n~~~~ 82 (717)
.+.+. .||. -+..-.+++.|+++.|-+-...-+.+.+.-+|+.||+|+|++. ..|. .+..+.+|+.|+++.|.+.
T Consensus 7 ~~~l~-~ip~-~i~~~~~~~~ln~~~N~~l~~pl~~~~~~v~L~~l~lsnn~~~-~fp~-~it~l~~L~~ln~s~n~i~- 81 (1081)
T KOG0618|consen 7 DEQLE-LIPE-QILNNEALQILNLRRNSLLSRPLEFVEKRVKLKSLDLSNNQIS-SFPI-QITLLSHLRQLNLSRNYIR- 81 (1081)
T ss_pred cccCc-ccch-hhccHHHHHhhhccccccccCchHHhhheeeeEEeeccccccc-cCCc-hhhhHHHHhhcccchhhHh-
Confidence 33433 5553 2333344777777777655332344455555777777777776 6666 6667777777777777665
Q ss_pred cCCcccccCCCCCCEEEccCCcccccccccccccCCCccccEEEccCCCCCCCCCchhhcCCCCCCEEEccCCCCcccCC
Q 005038 83 PISLEPLFNYSRLKIFNAENNEIKAEITESHSLIAPKFQLNTLSLSSNYGDGFIFPKFLYHQHDLEYVDLSHIKMNGEFP 162 (717)
Q Consensus 83 ~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~ 162 (717)
..+ ....++.+|+++.|.+|.+. ..|..+..+++|++||++.|++. .+|
T Consensus 82 ~vp-~s~~~~~~l~~lnL~~n~l~-----------------------------~lP~~~~~lknl~~LdlS~N~f~-~~P 130 (1081)
T KOG0618|consen 82 SVP-SSCSNMRNLQYLNLKNNRLQ-----------------------------SLPASISELKNLQYLDLSFNHFG-PIP 130 (1081)
T ss_pred hCc-hhhhhhhcchhheeccchhh-----------------------------cCchhHHhhhcccccccchhccC-CCc
Confidence 233 34556666666666665443 35667777788888888888776 666
Q ss_pred hhhhhCCCCCCEEEccCCcCcccCccCcCCCCCcCEEEccCCcCCccCCccccccCCCCcEEECCCCCCCccCCccccCC
Q 005038 163 NWLLENNTKLETLFLVNDSLAGPFRLPIHSHKRLRQLDVSNNNIRGHIPVKIGDVLPSLYVFNNSMNALDGSIPSSFGNM 242 (717)
Q Consensus 163 ~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~ls~n~i~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l 242 (717)
.-+ ..++.++.+..++|.... .++... ++++++..|.+.+.++.++.. +.. .+++++|.+. -..+..+
T Consensus 131 l~i-~~lt~~~~~~~s~N~~~~----~lg~~~-ik~~~l~~n~l~~~~~~~i~~-l~~--~ldLr~N~~~---~~dls~~ 198 (1081)
T KOG0618|consen 131 LVI-EVLTAEEELAASNNEKIQ----RLGQTS-IKKLDLRLNVLGGSFLIDIYN-LTH--QLDLRYNEME---VLDLSNL 198 (1081)
T ss_pred hhH-HhhhHHHHHhhhcchhhh----hhcccc-chhhhhhhhhcccchhcchhh-hhe--eeecccchhh---hhhhhhc
Confidence 655 566777777777772211 122222 677777777777666666543 222 5788888776 1235677
Q ss_pred CCCCEEEccCCccccccchhhhhCCCCCCEEEccCcccCccCcccccCCCCCCeEECcCCcCcccCcccccCCCCCCEEE
Q 005038 243 KFLQILDLSNNHLTGEIPEHLAVGCVNLQFLALSNNNLQGHLFSRNFNLTNLQWLQLEGNRFVGEIPQSLSKCSSLEGLY 322 (717)
Q Consensus 243 ~~L~~L~Ls~n~l~~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ 322 (717)
++|+.+....|++. .+. ..-++++.|+.++|.+....+. ..-.+|++++++.|++. .+|+++..+.+|+.++
T Consensus 199 ~~l~~l~c~rn~ls-~l~----~~g~~l~~L~a~~n~l~~~~~~--p~p~nl~~~dis~n~l~-~lp~wi~~~~nle~l~ 270 (1081)
T KOG0618|consen 199 ANLEVLHCERNQLS-ELE----ISGPSLTALYADHNPLTTLDVH--PVPLNLQYLDISHNNLS-NLPEWIGACANLEALN 270 (1081)
T ss_pred cchhhhhhhhcccc-eEE----ecCcchheeeeccCcceeeccc--cccccceeeecchhhhh-cchHHHHhcccceEec
Confidence 77888888888776 221 1246788888888887733222 23467888888888887 4568888888888888
Q ss_pred ccCCcCcCcCCcccCCCCCCCEEEccCCcccCCcccccCCCCCCCEEEccCCcCcccCCCccc--cccccEEeccCcccc
Q 005038 323 LNNNSLLGKIPRWLGNLTRLQYIIMPNNHLEGPIPVEFCQLDSLQILDISDNNISGSLPSCFH--PLSIKQVHLSKNMLH 400 (717)
Q Consensus 323 L~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~--~~~L~~L~l~~n~~~ 400 (717)
..+|.+. ..|..+...++|+.|.+..|.+. .+|....+.+.|++|++..|++....+..+. ..+++.+..+.|++.
T Consensus 271 ~n~N~l~-~lp~ri~~~~~L~~l~~~~nel~-yip~~le~~~sL~tLdL~~N~L~~lp~~~l~v~~~~l~~ln~s~n~l~ 348 (1081)
T KOG0618|consen 271 ANHNRLV-ALPLRISRITSLVSLSAAYNELE-YIPPFLEGLKSLRTLDLQSNNLPSLPDNFLAVLNASLNTLNVSSNKLS 348 (1081)
T ss_pred ccchhHH-hhHHHHhhhhhHHHHHhhhhhhh-hCCCcccccceeeeeeehhccccccchHHHhhhhHHHHHHhhhhcccc
Confidence 8888886 56777777788888888888887 4566667788888888888887744443333 223555555555553
Q ss_pred cccCccccCCCCcCCEEeCCCCcCCcccchhhhCCCCCcEEEcCCCccccccchhccCCCCCCEEEccCCcCccCCCccc
Q 005038 401 GQLKRGTFFNCSSLVTLDLSYNRLNGSIPDWVDGLSQLSHLILGHNNLEGEVSVQLCELNQLQLLDLSNNNLHGPIPPCF 480 (717)
Q Consensus 401 ~~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~ 480 (717)
.. +...=...+.|+.|++.+|.+++..-..+.+++.|+.|+|++|++...+...+.++..|+.|++++|+++. +|.+.
T Consensus 349 ~l-p~~~e~~~~~Lq~LylanN~Ltd~c~p~l~~~~hLKVLhLsyNrL~~fpas~~~kle~LeeL~LSGNkL~~-Lp~tv 426 (1081)
T KOG0618|consen 349 TL-PSYEENNHAALQELYLANNHLTDSCFPVLVNFKHLKVLHLSYNRLNSFPASKLRKLEELEELNLSGNKLTT-LPDTV 426 (1081)
T ss_pred cc-ccccchhhHHHHHHHHhcCcccccchhhhccccceeeeeecccccccCCHHHHhchHHhHHHhcccchhhh-hhHHH
Confidence 21 21111233556666666666666555556666666666666666665555556666666666666666652 22332
Q ss_pred ccccccccccCCCCCCcchhhhhhcccccccccccccceEEEeeccceeeeccccccccceeeCCCCccCCCCcccccCC
Q 005038 481 DNTTLHESYSNSSSPDEQFEIFFSIEGHQGFLEKQNHEIFEFTTKNIAYIYQGKVLSLLSGLDLSCNKLIGHIPPQIGNL 560 (717)
Q Consensus 481 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l 560 (717)
..+ ..|++|...+|++. ..| .+..+
T Consensus 427 a~~-----------------------------------------------------~~L~tL~ahsN~l~-~fP-e~~~l 451 (1081)
T KOG0618|consen 427 ANL-----------------------------------------------------GRLHTLRAHSNQLL-SFP-ELAQL 451 (1081)
T ss_pred Hhh-----------------------------------------------------hhhHHHhhcCCcee-ech-hhhhc
Confidence 222 24666666666665 444 56666
Q ss_pred ccCCeEeCCCcccCCCCCcCCCCCCCCCEEECCCCcCCccCchhhcCCCCCCEEeccCC
Q 005038 561 TRIQTLNLSHNNLTGSIPSTFSNLKHVESLDLSNNKLNGKIPHQLVELKTLEVFSVAYN 619 (717)
Q Consensus 561 ~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~N~i~~~~p~~~~~l~~L~~L~l~~N 619 (717)
+.|+.+|+|.|+++...-..-...++|++|||++|.-....-..|..++.+...++.-|
T Consensus 452 ~qL~~lDlS~N~L~~~~l~~~~p~p~LkyLdlSGN~~l~~d~~~l~~l~~l~~~~i~~~ 510 (1081)
T KOG0618|consen 452 PQLKVLDLSCNNLSEVTLPEALPSPNLKYLDLSGNTRLVFDHKTLKVLKSLSQMDITLN 510 (1081)
T ss_pred CcceEEecccchhhhhhhhhhCCCcccceeeccCCcccccchhhhHHhhhhhheecccC
Confidence 66666666666665332211122256666666666643333344445555555555544
No 8
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=99.97 E-value=8.3e-34 Score=296.62 Aligned_cols=486 Identities=24% Similarity=0.300 Sum_probs=374.6
Q ss_pred eeCCCCCCCCCcchhccCCCCCCEEeCCCCCCcccCCccccCCCCCCCEEECCCCcccCcCCcccccCCCCCCEEEccCC
Q 005038 24 LYIASNDLRGSLPWCMANMTSLRILDVSSNQLTGSISSSPLVHLTSIEELMLSNNYFQIPISLEPLFNYSRLKIFNAENN 103 (717)
Q Consensus 24 L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~i~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~l~~n 103 (717)
+|++...+. .+|..+-.-..++.|+++.|.+. ..|...+.+.-+|+.||+++|++. ++|. .+..+.+|+.|+++.|
T Consensus 3 vd~s~~~l~-~ip~~i~~~~~~~~ln~~~N~~l-~~pl~~~~~~v~L~~l~lsnn~~~-~fp~-~it~l~~L~~ln~s~n 78 (1081)
T KOG0618|consen 3 VDASDEQLE-LIPEQILNNEALQILNLRRNSLL-SRPLEFVEKRVKLKSLDLSNNQIS-SFPI-QITLLSHLRQLNLSRN 78 (1081)
T ss_pred cccccccCc-ccchhhccHHHHHhhhccccccc-cCchHHhhheeeeEEeeccccccc-cCCc-hhhhHHHHhhcccchh
Confidence 566666666 55655555555888888888776 555545556666888888888775 3442 3555666666666666
Q ss_pred cccccccccccccCCCccccEEEccCCCCCCCCCchhhcCCCCCCEEEccCCCCcccCChhhhhCCCCCCEEEccCCcCc
Q 005038 104 EIKAEITESHSLIAPKFQLNTLSLSSNYGDGFIFPKFLYHQHDLEYVDLSHIKMNGEFPNWLLENNTKLETLFLVNDSLA 183 (717)
Q Consensus 104 ~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~ 183 (717)
.+. ..|....++.+|++++|.+|.+. ..|..+ ..+.+|+.|+++.|.+.
T Consensus 79 ~i~-----------------------------~vp~s~~~~~~l~~lnL~~n~l~-~lP~~~-~~lknl~~LdlS~N~f~ 127 (1081)
T KOG0618|consen 79 YIR-----------------------------SVPSSCSNMRNLQYLNLKNNRLQ-SLPASI-SELKNLQYLDLSFNHFG 127 (1081)
T ss_pred hHh-----------------------------hCchhhhhhhcchhheeccchhh-cCchhH-HhhhcccccccchhccC
Confidence 553 23466678889999999999887 778776 78899999999999886
Q ss_pred ccCccCcCCCCCcCEEEccCCcCCccCCccccccCCCCcEEECCCCCCCccCCccccCCCCCCEEEccCCccccccchhh
Q 005038 184 GPFRLPIHSHKRLRQLDVSNNNIRGHIPVKIGDVLPSLYVFNNSMNALDGSIPSSFGNMKFLQILDLSNNHLTGEIPEHL 263 (717)
Q Consensus 184 ~~~~~~~~~~~~L~~L~ls~n~i~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~ 263 (717)
.+|..+..+..+..++.++|.-....+. ...+.+++..|.+.+.++..+..+.. .|+|.+|.+. ...
T Consensus 128 -~~Pl~i~~lt~~~~~~~s~N~~~~~lg~------~~ik~~~l~~n~l~~~~~~~i~~l~~--~ldLr~N~~~-~~d--- 194 (1081)
T KOG0618|consen 128 -PIPLVIEVLTAEEELAASNNEKIQRLGQ------TSIKKLDLRLNVLGGSFLIDIYNLTH--QLDLRYNEME-VLD--- 194 (1081)
T ss_pred -CCchhHHhhhHHHHHhhhcchhhhhhcc------ccchhhhhhhhhcccchhcchhhhhe--eeecccchhh-hhh---
Confidence 5677788888889999999822212221 13777888888888888888877777 7999999886 222
Q ss_pred hhCCCCCCEEEccCcccCccCcccccCCCCCCeEECcCCcCcccCcccccCCCCCCEEEccCCcCcCcCCcccCCCCCCC
Q 005038 264 AVGCVNLQFLALSNNNLQGHLFSRNFNLTNLQWLQLEGNRFVGEIPQSLSKCSSLEGLYLNNNSLLGKIPRWLGNLTRLQ 343 (717)
Q Consensus 264 ~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~ 343 (717)
...+.+|+.+....|.+..... .-++|+.|+.++|.++...+. ....+|++++++.|.+. .+|+++..+.+|+
T Consensus 195 ls~~~~l~~l~c~rn~ls~l~~----~g~~l~~L~a~~n~l~~~~~~--p~p~nl~~~dis~n~l~-~lp~wi~~~~nle 267 (1081)
T KOG0618|consen 195 LSNLANLEVLHCERNQLSELEI----SGPSLTALYADHNPLTTLDVH--PVPLNLQYLDISHNNLS-NLPEWIGACANLE 267 (1081)
T ss_pred hhhccchhhhhhhhcccceEEe----cCcchheeeeccCcceeeccc--cccccceeeecchhhhh-cchHHHHhcccce
Confidence 2347889999999988874332 347899999999999854433 23468999999999998 5779999999999
Q ss_pred EEEccCCcccCCcccccCCCCCCCEEEccCCcCcccCCCccccccccEEeccCcccccccCccccCCCCc-CCEEeCCCC
Q 005038 344 YIIMPNNHLEGPIPVEFCQLDSLQILDISDNNISGSLPSCFHPLSIKQVHLSKNMLHGQLKRGTFFNCSS-LVTLDLSYN 422 (717)
Q Consensus 344 ~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~-L~~L~L~~n 422 (717)
.+....|.+. .+|..+...++|+.|.+..|.+....+..-...+|+.|++..|.+ ..++...|..... +..|+.+.|
T Consensus 268 ~l~~n~N~l~-~lp~ri~~~~~L~~l~~~~nel~yip~~le~~~sL~tLdL~~N~L-~~lp~~~l~v~~~~l~~ln~s~n 345 (1081)
T KOG0618|consen 268 ALNANHNRLV-ALPLRISRITSLVSLSAAYNELEYIPPFLEGLKSLRTLDLQSNNL-PSLPDNFLAVLNASLNTLNVSSN 345 (1081)
T ss_pred EecccchhHH-hhHHHHhhhhhHHHHHhhhhhhhhCCCcccccceeeeeeehhccc-cccchHHHhhhhHHHHHHhhhhc
Confidence 9999999996 677888889999999999999986666666688999999999999 4556554555444 788888888
Q ss_pred cCCcccchhhhCCCCCcEEEcCCCccccccchhccCCCCCCEEEccCCcCccCCCcccccccccccccCCCCCCcchhhh
Q 005038 423 RLNGSIPDWVDGLSQLSHLILGHNNLEGEVSVQLCELNQLQLLDLSNNNLHGPIPPCFDNTTLHESYSNSSSPDEQFEIF 502 (717)
Q Consensus 423 ~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 502 (717)
++.......=..++.|+.|++.+|.++......+.+.+.|+.|+|++|.+...+..++.+
T Consensus 346 ~l~~lp~~~e~~~~~Lq~LylanN~Ltd~c~p~l~~~~hLKVLhLsyNrL~~fpas~~~k-------------------- 405 (1081)
T KOG0618|consen 346 KLSTLPSYEENNHAALQELYLANNHLTDSCFPVLVNFKHLKVLHLSYNRLNSFPASKLRK-------------------- 405 (1081)
T ss_pred cccccccccchhhHHHHHHHHhcCcccccchhhhccccceeeeeecccccccCCHHHHhc--------------------
Confidence 887432211223678999999999999888888999999999999999997655544444
Q ss_pred hhcccccccccccccceEEEeeccceeeeccccccccceeeCCCCccCCCCcccccCCccCCeEeCCCcccCCCCCcCCC
Q 005038 503 FSIEGHQGFLEKQNHEIFEFTTKNIAYIYQGKVLSLLSGLDLSCNKLIGHIPPQIGNLTRIQTLNLSHNNLTGSIPSTFS 582 (717)
Q Consensus 503 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~~ 582 (717)
++.|+.|+||+|+++ .+|..+..++.|++|...+|.+. ..| .+.
T Consensus 406 ---------------------------------le~LeeL~LSGNkL~-~Lp~tva~~~~L~tL~ahsN~l~-~fP-e~~ 449 (1081)
T KOG0618|consen 406 ---------------------------------LEELEELNLSGNKLT-TLPDTVANLGRLHTLRAHSNQLL-SFP-ELA 449 (1081)
T ss_pred ---------------------------------hHHhHHHhcccchhh-hhhHHHHhhhhhHHHhhcCCcee-ech-hhh
Confidence 337999999999999 67899999999999999999999 778 889
Q ss_pred CCCCCCEEECCCCcCCccCchhhcCCCCCCEEeccCCcCe
Q 005038 583 NLKHVESLDLSNNKLNGKIPHQLVELKTLEVFSVAYNNLS 622 (717)
Q Consensus 583 ~l~~L~~L~L~~N~i~~~~p~~~~~l~~L~~L~l~~N~l~ 622 (717)
.++.|+.+|+|.|.++...-..-...++|++||++||...
T Consensus 450 ~l~qL~~lDlS~N~L~~~~l~~~~p~p~LkyLdlSGN~~l 489 (1081)
T KOG0618|consen 450 QLPQLKVLDLSCNNLSEVTLPEALPSPNLKYLDLSGNTRL 489 (1081)
T ss_pred hcCcceEEecccchhhhhhhhhhCCCcccceeeccCCccc
Confidence 9999999999999998544333334489999999999853
No 9
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.97 E-value=2.8e-33 Score=279.55 Aligned_cols=366 Identities=29% Similarity=0.376 Sum_probs=254.9
Q ss_pred CCCCCEEEccCCCCc-ccCChhhhhCCCCCCEEEccCCcCcccCccCcCCCCCcCEEEccCCcCCccCCccccccCCCCc
Q 005038 144 QHDLEYVDLSHIKMN-GEFPNWLLENNTKLETLFLVNDSLAGPFRLPIHSHKRLRQLDVSNNNIRGHIPVKIGDVLPSLY 222 (717)
Q Consensus 144 ~~~L~~L~l~~~~~~-~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~ls~n~i~~~~~~~~~~~l~~L~ 222 (717)
++..+-+|+++|.++ +.+|..+ ..+++++.|.|....+. .+|..++.+.+|++|.+++|++. .+...+.+ ++.|+
T Consensus 6 LpFVrGvDfsgNDFsg~~FP~~v-~qMt~~~WLkLnrt~L~-~vPeEL~~lqkLEHLs~~HN~L~-~vhGELs~-Lp~LR 81 (1255)
T KOG0444|consen 6 LPFVRGVDFSGNDFSGDRFPHDV-EQMTQMTWLKLNRTKLE-QVPEELSRLQKLEHLSMAHNQLI-SVHGELSD-LPRLR 81 (1255)
T ss_pred cceeecccccCCcCCCCcCchhH-HHhhheeEEEechhhhh-hChHHHHHHhhhhhhhhhhhhhH-hhhhhhcc-chhhH
Confidence 345677899999888 4677775 78889999999887765 46778888889999999998876 44444433 77888
Q ss_pred EEECCCCCCCc-cCCccccCCCCCCEEEccCCccccccchhhhhCCCCCCEEEccCcccCccCcccccCCCCCCeEECcC
Q 005038 223 VFNNSMNALDG-SIPSSFGNMKFLQILDLSNNHLTGEIPEHLAVGCVNLQFLALSNNNLQGHLFSRNFNLTNLQWLQLEG 301 (717)
Q Consensus 223 ~L~l~~n~~~~-~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~ 301 (717)
.+.+..|++.. -+|..+..+..|+.||||+|+++ ++|..+- ...++-+|+||+|+|..+....|.+++.|-.|||++
T Consensus 82 sv~~R~N~LKnsGiP~diF~l~dLt~lDLShNqL~-EvP~~LE-~AKn~iVLNLS~N~IetIPn~lfinLtDLLfLDLS~ 159 (1255)
T KOG0444|consen 82 SVIVRDNNLKNSGIPTDIFRLKDLTILDLSHNQLR-EVPTNLE-YAKNSIVLNLSYNNIETIPNSLFINLTDLLFLDLSN 159 (1255)
T ss_pred HHhhhccccccCCCCchhcccccceeeecchhhhh-hcchhhh-hhcCcEEEEcccCccccCCchHHHhhHhHhhhcccc
Confidence 88888887753 46777888888888888888888 8888775 477888888888888876666677888888888888
Q ss_pred CcCcccCcccccCCCCCCEEEccCCcCcCcCCcccCCCCCCCEEEccCCccc-CCcccccCCCCCCCEEEccCCcCcccC
Q 005038 302 NRFVGEIPQSLSKCSSLEGLYLNNNSLLGKIPRWLGNLTRLQYIIMPNNHLE-GPIPVEFCQLDSLQILDISDNNISGSL 380 (717)
Q Consensus 302 n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~-~~~~~~~~~l~~L~~L~l~~n~~~~~~ 380 (717)
|++. .+|..+..+..|++|+|++|++....-..+.++++|+.|.+++.+-+ ..+|.++..+.+|..+|++.|.+.
T Consensus 160 NrLe-~LPPQ~RRL~~LqtL~Ls~NPL~hfQLrQLPsmtsL~vLhms~TqRTl~N~Ptsld~l~NL~dvDlS~N~Lp--- 235 (1255)
T KOG0444|consen 160 NRLE-MLPPQIRRLSMLQTLKLSNNPLNHFQLRQLPSMTSLSVLHMSNTQRTLDNIPTSLDDLHNLRDVDLSENNLP--- 235 (1255)
T ss_pred chhh-hcCHHHHHHhhhhhhhcCCChhhHHHHhcCccchhhhhhhcccccchhhcCCCchhhhhhhhhccccccCCC---
Confidence 8887 55556777888888888888776433344555667777777776543 235666666667777777766654
Q ss_pred CCccccccccEEeccCcccccccCccccCCCCcCCEEeCCCCcCCcccchhhhCCCCCcEEEcCCCccccccchhccCCC
Q 005038 381 PSCFHPLSIKQVHLSKNMLHGQLKRGTFFNCSSLVTLDLSYNRLNGSIPDWVDGLSQLSHLILGHNNLEGEVSVQLCELN 460 (717)
Q Consensus 381 ~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~ 460 (717)
.+|. .+..+++|+.|+||+|+|+. +.-......+|++|+++.|+++ ..|..++.++
T Consensus 236 ---------------------~vPe-cly~l~~LrrLNLS~N~ite-L~~~~~~W~~lEtLNlSrNQLt-~LP~avcKL~ 291 (1255)
T KOG0444|consen 236 ---------------------IVPE-CLYKLRNLRRLNLSGNKITE-LNMTEGEWENLETLNLSRNQLT-VLPDAVCKLT 291 (1255)
T ss_pred ---------------------cchH-HHhhhhhhheeccCcCceee-eeccHHHHhhhhhhccccchhc-cchHHHhhhH
Confidence 1222 25566777777777777763 2333444567777777777777 5677777777
Q ss_pred CCCEEEccCCcCcc-CCCcccccccccccccCCCCCCcchhhhhhcccccccccccccceEEEeeccceeeecccccccc
Q 005038 461 QLQLLDLSNNNLHG-PIPPCFDNTTLHESYSNSSSPDEQFEIFFSIEGHQGFLEKQNHEIFEFTTKNIAYIYQGKVLSLL 539 (717)
Q Consensus 461 ~L~~L~L~~n~l~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L 539 (717)
.|+.|...+|+++- -+|...+. +..|
T Consensus 292 kL~kLy~n~NkL~FeGiPSGIGK-----------------------------------------------------L~~L 318 (1255)
T KOG0444|consen 292 KLTKLYANNNKLTFEGIPSGIGK-----------------------------------------------------LIQL 318 (1255)
T ss_pred HHHHHHhccCcccccCCccchhh-----------------------------------------------------hhhh
Confidence 77777777777642 12222222 2246
Q ss_pred ceeeCCCCccCCCCcccccCCccCCeEeCCCcccCCCCCcCCCCCCCCCEEECCCCcCC
Q 005038 540 SGLDLSCNKLIGHIPPQIGNLTRIQTLNLSHNNLTGSIPSTFSNLKHVESLDLSNNKLN 598 (717)
Q Consensus 540 ~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~N~i~ 598 (717)
+.+...+|.+. .+|+.+..+..|+.|.|++|++. .+|+.+.-++.|+.||+..|+-.
T Consensus 319 evf~aanN~LE-lVPEglcRC~kL~kL~L~~NrLi-TLPeaIHlL~~l~vLDlreNpnL 375 (1255)
T KOG0444|consen 319 EVFHAANNKLE-LVPEGLCRCVKLQKLKLDHNRLI-TLPEAIHLLPDLKVLDLRENPNL 375 (1255)
T ss_pred HHHHhhccccc-cCchhhhhhHHHHHhccccccee-echhhhhhcCCcceeeccCCcCc
Confidence 66666666655 66666666666666666666666 56666666666666666666655
No 10
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.97 E-value=5.3e-33 Score=277.64 Aligned_cols=382 Identities=28% Similarity=0.368 Sum_probs=314.0
Q ss_pred ccEEEccCCCCCCCCCchhhcCCCCCCEEEccCCCCcccCChhhhhCCCCCCEEEccCCcCcccCccCcCCCCCcCEEEc
Q 005038 122 LNTLSLSSNYGDGFIFPKFLYHQHDLEYVDLSHIKMNGEFPNWLLENNTKLETLFLVNDSLAGPFRLPIHSHKRLRQLDV 201 (717)
Q Consensus 122 L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l 201 (717)
.+-+++++|....+.+|.....++.++.|.|...++. .+|+.+ +.+.+|++|.+++|++... ...+..++.||.+++
T Consensus 9 VrGvDfsgNDFsg~~FP~~v~qMt~~~WLkLnrt~L~-~vPeEL-~~lqkLEHLs~~HN~L~~v-hGELs~Lp~LRsv~~ 85 (1255)
T KOG0444|consen 9 VRGVDFSGNDFSGDRFPHDVEQMTQMTWLKLNRTKLE-QVPEEL-SRLQKLEHLSMAHNQLISV-HGELSDLPRLRSVIV 85 (1255)
T ss_pred eecccccCCcCCCCcCchhHHHhhheeEEEechhhhh-hChHHH-HHHhhhhhhhhhhhhhHhh-hhhhccchhhHHHhh
Confidence 4445564444444578999999999999999999887 889987 7899999999999988743 345778899999999
Q ss_pred cCCcCCcc-CCccccccCCCCcEEECCCCCCCccCCccccCCCCCCEEEccCCccccccchhhhhCCCCCCEEEccCccc
Q 005038 202 SNNNIRGH-IPVKIGDVLPSLYVFNNSMNALDGSIPSSFGNMKFLQILDLSNNHLTGEIPEHLAVGCVNLQFLALSNNNL 280 (717)
Q Consensus 202 s~n~i~~~-~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~L~~L~L~~n~i 280 (717)
..|++... +|.+++. +..|..|++++|++. ..|..+.+-+++-+|+||+|+|. +||..++.+++.|-.||||+|++
T Consensus 86 R~N~LKnsGiP~diF~-l~dLt~lDLShNqL~-EvP~~LE~AKn~iVLNLS~N~Ie-tIPn~lfinLtDLLfLDLS~NrL 162 (1255)
T KOG0444|consen 86 RDNNLKNSGIPTDIFR-LKDLTILDLSHNQLR-EVPTNLEYAKNSIVLNLSYNNIE-TIPNSLFINLTDLLFLDLSNNRL 162 (1255)
T ss_pred hccccccCCCCchhcc-cccceeeecchhhhh-hcchhhhhhcCcEEEEcccCccc-cCCchHHHhhHhHhhhccccchh
Confidence 99988644 7888887 789999999999998 68888999999999999999998 99999999999999999999999
Q ss_pred CccCcccccCCCCCCeEECcCCcCcccCcccccCCCCCCEEEccCCcCc-CcCCcccCCCCCCCEEEccCCcccCCcccc
Q 005038 281 QGHLFSRNFNLTNLQWLQLEGNRFVGEIPQSLSKCSSLEGLYLNNNSLL-GKIPRWLGNLTRLQYIIMPNNHLEGPIPVE 359 (717)
Q Consensus 281 ~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~~~-~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~ 359 (717)
. ..|..+..+.+|++|+|++|.+...--..+..+++|++|.+++.+-+ ..+|..+..+.+|..++++.|.+. ..|+.
T Consensus 163 e-~LPPQ~RRL~~LqtL~Ls~NPL~hfQLrQLPsmtsL~vLhms~TqRTl~N~Ptsld~l~NL~dvDlS~N~Lp-~vPec 240 (1255)
T KOG0444|consen 163 E-MLPPQIRRLSMLQTLKLSNNPLNHFQLRQLPSMTSLSVLHMSNTQRTLDNIPTSLDDLHNLRDVDLSENNLP-IVPEC 240 (1255)
T ss_pred h-hcCHHHHHHhhhhhhhcCCChhhHHHHhcCccchhhhhhhcccccchhhcCCCchhhhhhhhhccccccCCC-cchHH
Confidence 8 57778889999999999999887543345667788999999987543 468888999999999999999998 78999
Q ss_pred cCCCCCCCEEEccCCcCcccCCCccccccccEEeccCcccccccCccccCCCCcCCEEeCCCCcCCcccchhhhCCCCCc
Q 005038 360 FCQLDSLQILDISDNNISGSLPSCFHPLSIKQVHLSKNMLHGQLKRGTFFNCSSLVTLDLSYNRLNGSIPDWVDGLSQLS 439 (717)
Q Consensus 360 ~~~l~~L~~L~l~~n~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~~~~l~~L~ 439 (717)
+..+++|+.|++++|+++.... . .....+|++|++|.|+++ .+|+++.++++|+
T Consensus 241 ly~l~~LrrLNLS~N~iteL~~------------------------~-~~~W~~lEtLNlSrNQLt-~LP~avcKL~kL~ 294 (1255)
T KOG0444|consen 241 LYKLRNLRRLNLSGNKITELNM------------------------T-EGEWENLETLNLSRNQLT-VLPDAVCKLTKLT 294 (1255)
T ss_pred HhhhhhhheeccCcCceeeeec------------------------c-HHHHhhhhhhccccchhc-cchHHHhhhHHHH
Confidence 9999999999999999873211 1 234468999999999999 7899999999999
Q ss_pred EEEcCCCccc-cccchhccCCCCCCEEEccCCcCccCCCcccccccccccccCCCCCCcchhhhhhcccccccccccccc
Q 005038 440 HLILGHNNLE-GEVSVQLCELNQLQLLDLSNNNLHGPIPPCFDNTTLHESYSNSSSPDEQFEIFFSIEGHQGFLEKQNHE 518 (717)
Q Consensus 440 ~L~L~~n~l~-~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 518 (717)
.|.+.+|+++ .-+|..++.+.+|+.+..++|.+. ..|..+..+
T Consensus 295 kLy~n~NkL~FeGiPSGIGKL~~Levf~aanN~LE-lVPEglcRC----------------------------------- 338 (1255)
T KOG0444|consen 295 KLYANNNKLTFEGIPSGIGKLIQLEVFHAANNKLE-LVPEGLCRC----------------------------------- 338 (1255)
T ss_pred HHHhccCcccccCCccchhhhhhhHHHHhhccccc-cCchhhhhh-----------------------------------
Confidence 9999999987 235778899999999999998874 555544432
Q ss_pred eEEEeeccceeeeccccccccceeeCCCCccCCCCcccccCCccCCeEeCCCcccCCCCCcCCCCCCCCCEEEC
Q 005038 519 IFEFTTKNIAYIYQGKVLSLLSGLDLSCNKLIGHIPPQIGNLTRIQTLNLSHNNLTGSIPSTFSNLKHVESLDL 592 (717)
Q Consensus 519 ~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L 592 (717)
..|+.|.|++|.+. ..|+++.-++.|+.||+..|.-....|.--..-++|+.-++
T Consensus 339 ------------------~kL~kL~L~~NrLi-TLPeaIHlL~~l~vLDlreNpnLVMPPKP~da~~~lefYNI 393 (1255)
T KOG0444|consen 339 ------------------VKLQKLKLDHNRLI-TLPEAIHLLPDLKVLDLRENPNLVMPPKPNDARKKLEFYNI 393 (1255)
T ss_pred ------------------HHHHHhccccccee-echhhhhhcCCcceeeccCCcCccCCCCcchhhhcceeeec
Confidence 36999999999998 78999999999999999999876444433222245554443
No 11
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=99.91 E-value=9.6e-27 Score=221.34 Aligned_cols=272 Identities=21% Similarity=0.197 Sum_probs=167.9
Q ss_pred CCCcCEEEccCCcCCccCCccccccCCCCcEEECCCCCCCccCCccccCCCCCCEEEccC-CccccccchhhhhCCCCCC
Q 005038 193 HKRLRQLDVSNNNIRGHIPVKIGDVLPSLYVFNNSMNALDGSIPSSFGNMKFLQILDLSN-NHLTGEIPEHLAVGCVNLQ 271 (717)
Q Consensus 193 ~~~L~~L~ls~n~i~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~Ls~-n~l~~~~~~~~~~~~~~L~ 271 (717)
.+.-..++|..|.|+ .+|...++.+++|+.+++++|.|+.+-|++|..++++..|.+.+ |+|+ .+|...|.++..++
T Consensus 66 P~~tveirLdqN~I~-~iP~~aF~~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~NkI~-~l~k~~F~gL~slq 143 (498)
T KOG4237|consen 66 PPETVEIRLDQNQIS-SIPPGAFKTLHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYGNNKIT-DLPKGAFGGLSSLQ 143 (498)
T ss_pred CCcceEEEeccCCcc-cCChhhccchhhhceecccccchhhcChHhhhhhHhhhHHHhhcCCchh-hhhhhHhhhHHHHH
Confidence 356678888888888 88888888888888888888888888888888888888777666 7888 88888888888888
Q ss_pred EEEccCcccCccCcccccCCCCCCeEECcCCcCcccCcccccCCCCCCEEEccCCcCc------------CcCCcccCCC
Q 005038 272 FLALSNNNLQGHLFSRNFNLTNLQWLQLEGNRFVGEIPQSLSKCSSLEGLYLNNNSLL------------GKIPRWLGNL 339 (717)
Q Consensus 272 ~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~~~------------~~~~~~~~~l 339 (717)
.|.+.-|++..+..++|..++++..|.+.+|.+..+....|..+..++.+.+..|.+. ...|..++..
T Consensus 144 rLllNan~i~Cir~~al~dL~~l~lLslyDn~~q~i~~~tf~~l~~i~tlhlA~np~icdCnL~wla~~~a~~~ietsga 223 (498)
T KOG4237|consen 144 RLLLNANHINCIRQDALRDLPSLSLLSLYDNKIQSICKGTFQGLAAIKTLHLAQNPFICDCNLPWLADDLAMNPIETSGA 223 (498)
T ss_pred HHhcChhhhcchhHHHHHHhhhcchhcccchhhhhhccccccchhccchHhhhcCccccccccchhhhHHhhchhhcccc
Confidence 8888888888878888888888888888888887555557888888888888777632 1122222333
Q ss_pred CCCCEEEccCCcccCCcccccCCCCCCCEEEccCCcCcccCCCccccccccEEeccCcccccccCccccCCCCcCCEEeC
Q 005038 340 TRLQYIIMPNNHLEGPIPVEFCQLDSLQILDISDNNISGSLPSCFHPLSIKQVHLSKNMLHGQLKRGTFFNCSSLVTLDL 419 (717)
Q Consensus 340 ~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~L 419 (717)
.......+.+.++.++.+..|... ++.+ ..-..+.+...+..|...|..+++|+.|++
T Consensus 224 rc~~p~rl~~~Ri~q~~a~kf~c~--~esl--------------------~s~~~~~d~~d~~cP~~cf~~L~~L~~lnl 281 (498)
T KOG4237|consen 224 RCVSPYRLYYKRINQEDARKFLCS--LESL--------------------PSRLSSEDFPDSICPAKCFKKLPNLRKLNL 281 (498)
T ss_pred eecchHHHHHHHhcccchhhhhhh--HHhH--------------------HHhhccccCcCCcChHHHHhhcccceEecc
Confidence 333333333333333322222211 1111 111111122222333334555555555555
Q ss_pred CCCcCCcccchhhhCCCCCcEEEcCCCccccccchhccCCCCCCEEEccCCcCccCCCccccccccccc
Q 005038 420 SYNRLNGSIPDWVDGLSQLSHLILGHNNLEGEVSVQLCELNQLQLLDLSNNNLHGPIPPCFDNTTLHES 488 (717)
Q Consensus 420 ~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~ 488 (717)
++|+++.+-+.+|.+...+++|.|..|++.......|.++..|+.|+|.+|+|+...|..|.....+..
T Consensus 282 snN~i~~i~~~aFe~~a~l~eL~L~~N~l~~v~~~~f~~ls~L~tL~L~~N~it~~~~~aF~~~~~l~~ 350 (498)
T KOG4237|consen 282 SNNKITRIEDGAFEGAAELQELYLTRNKLEFVSSGMFQGLSGLKTLSLYDNQITTVAPGAFQTLFSLST 350 (498)
T ss_pred CCCccchhhhhhhcchhhhhhhhcCcchHHHHHHHhhhccccceeeeecCCeeEEEecccccccceeee
Confidence 555555555555555555555555555555444445555555555555555555555555554443333
No 12
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=99.91 E-value=1.1e-26 Score=220.95 Aligned_cols=294 Identities=24% Similarity=0.230 Sum_probs=197.2
Q ss_pred EEEccCCCCcccCChhhhhCCCCCCEEEccCCcCcccCccCcCCCCCcCEEEccCCcCCccCCccccccCCCCcEEEC-C
Q 005038 149 YVDLSHIKMNGEFPNWLLENNTKLETLFLVNDSLAGPFRLPIHSHKRLRQLDVSNNNIRGHIPVKIGDVLPSLYVFNN-S 227 (717)
Q Consensus 149 ~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~ls~n~i~~~~~~~~~~~l~~L~~L~l-~ 227 (717)
.++-++-.++ ++|..+ -+....++|..|.|+...+..|+.+++||.||||.|.|+ .|....+..++++..|-+ +
T Consensus 50 ~VdCr~~GL~-eVP~~L---P~~tveirLdqN~I~~iP~~aF~~l~~LRrLdLS~N~Is-~I~p~AF~GL~~l~~Lvlyg 124 (498)
T KOG4237|consen 50 IVDCRGKGLT-EVPANL---PPETVEIRLDQNQISSIPPGAFKTLHRLRRLDLSKNNIS-FIAPDAFKGLASLLSLVLYG 124 (498)
T ss_pred eEEccCCCcc-cCcccC---CCcceEEEeccCCcccCChhhccchhhhceecccccchh-hcChHhhhhhHhhhHHHhhc
Confidence 3444555555 667543 346789999999999999999999999999999999998 677677777777766554 5
Q ss_pred CCCCCccCCccccCCCCCCEEEccCCccccccchhhhhCCCCCCEEEccCcccCccCcccccCCCCCCeEECcCCcCcc-
Q 005038 228 MNALDGSIPSSFGNMKFLQILDLSNNHLTGEIPEHLAVGCVNLQFLALSNNNLQGHLFSRNFNLTNLQWLQLEGNRFVG- 306 (717)
Q Consensus 228 ~n~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~- 306 (717)
+|+|+......|..+.+++.|.+.-|++. -++...+..++++..|.+.+|.+..+--.+|..+..++.+.+..|.+..
T Consensus 125 ~NkI~~l~k~~F~gL~slqrLllNan~i~-Cir~~al~dL~~l~lLslyDn~~q~i~~~tf~~l~~i~tlhlA~np~icd 203 (498)
T KOG4237|consen 125 NNKITDLPKGAFGGLSSLQRLLLNANHIN-CIRQDALRDLPSLSLLSLYDNKIQSICKGTFQGLAAIKTLHLAQNPFICD 203 (498)
T ss_pred CCchhhhhhhHhhhHHHHHHHhcChhhhc-chhHHHHHHhhhcchhcccchhhhhhccccccchhccchHhhhcCccccc
Confidence 59999777788999999999999999998 8888888889999999999999987666689999999999998887331
Q ss_pred -----------cCcccccCCCCCCEEEccCCcCcCcCCcccCC-CCCCCEEEccCCcccCC-cccccCCCCCCCEEEccC
Q 005038 307 -----------EIPQSLSKCSSLEGLYLNNNSLLGKIPRWLGN-LTRLQYIIMPNNHLEGP-IPVEFCQLDSLQILDISD 373 (717)
Q Consensus 307 -----------~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~-l~~L~~L~l~~n~~~~~-~~~~~~~l~~L~~L~l~~ 373 (717)
..|..++...-..-..+.+.++..+-+..|.. ...+..--.+.+...+. ....|..+++|+.|++++
T Consensus 204 CnL~wla~~~a~~~ietsgarc~~p~rl~~~Ri~q~~a~kf~c~~esl~s~~~~~d~~d~~cP~~cf~~L~~L~~lnlsn 283 (498)
T KOG4237|consen 204 CNLPWLADDLAMNPIETSGARCVSPYRLYYKRINQEDARKFLCSLESLPSRLSSEDFPDSICPAKCFKKLPNLRKLNLSN 283 (498)
T ss_pred cccchhhhHHhhchhhcccceecchHHHHHHHhcccchhhhhhhHHhHHHhhccccCcCCcChHHHHhhcccceEeccCC
Confidence 22233333333334444455544333333322 11221111222222223 334588999999999999
Q ss_pred CcCcccCCCccccccccEEeccCcccccccCccccCCCCcCCEEeCCCCcCCcccchhhhCCCCCcEEEcCCCccccccc
Q 005038 374 NNISGSLPSCFHPLSIKQVHLSKNMLHGQLKRGTFFNCSSLVTLDLSYNRLNGSIPDWVDGLSQLSHLILGHNNLEGEVS 453 (717)
Q Consensus 374 n~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~ 453 (717)
|+++++-+.+ |.+..++++|.|..|++.......|.++..|+.|+|.+|+|+...|
T Consensus 284 N~i~~i~~~a------------------------Fe~~a~l~eL~L~~N~l~~v~~~~f~~ls~L~tL~L~~N~it~~~~ 339 (498)
T KOG4237|consen 284 NKITRIEDGA------------------------FEGAAELQELYLTRNKLEFVSSGMFQGLSGLKTLSLYDNQITTVAP 339 (498)
T ss_pred Cccchhhhhh------------------------hcchhhhhhhhcCcchHHHHHHHhhhccccceeeeecCCeeEEEec
Confidence 9998655555 4444555555555555544444445555555555555555555555
Q ss_pred hhccCCCCCCEEEccCCcC
Q 005038 454 VQLCELNQLQLLDLSNNNL 472 (717)
Q Consensus 454 ~~l~~l~~L~~L~L~~n~l 472 (717)
..|..+.+|..|.+-.|++
T Consensus 340 ~aF~~~~~l~~l~l~~Np~ 358 (498)
T KOG4237|consen 340 GAFQTLFSLSTLNLLSNPF 358 (498)
T ss_pred ccccccceeeeeehccCcc
Confidence 5555555555555555543
No 13
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=99.91 E-value=1.8e-22 Score=237.52 Aligned_cols=340 Identities=21% Similarity=0.245 Sum_probs=182.2
Q ss_pred CcCCCCCcCEEEccCCcC------CccCCccccccCCCCcEEECCCCCCCccCCccccCCCCCCEEEccCCccccccchh
Q 005038 189 PIHSHKRLRQLDVSNNNI------RGHIPVKIGDVLPSLYVFNNSMNALDGSIPSSFGNMKFLQILDLSNNHLTGEIPEH 262 (717)
Q Consensus 189 ~~~~~~~L~~L~ls~n~i------~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~ 262 (717)
.|.++++|+.|.+..+.. ...+|..+....++|+.|.+.++.+. .+|..+ ...+|+.|++++|.+. .++..
T Consensus 553 aF~~m~~L~~L~~~~~~~~~~~~~~~~lp~~~~~lp~~Lr~L~~~~~~l~-~lP~~f-~~~~L~~L~L~~s~l~-~L~~~ 629 (1153)
T PLN03210 553 AFKGMRNLLFLKFYTKKWDQKKEVRWHLPEGFDYLPPKLRLLRWDKYPLR-CMPSNF-RPENLVKLQMQGSKLE-KLWDG 629 (1153)
T ss_pred HHhcCccccEEEEecccccccccceeecCcchhhcCcccEEEEecCCCCC-CCCCcC-CccCCcEEECcCcccc-ccccc
Confidence 355566666666654322 11233333332335666666655554 444444 3456666666666655 44444
Q ss_pred hhhCCCCCCEEEccCcccCccCcccccCCCCCCeEECcCCcCcccCcccccCCCCCCEEEccCCcCcCcCCcccCCCCCC
Q 005038 263 LAVGCVNLQFLALSNNNLQGHLFSRNFNLTNLQWLQLEGNRFVGEIPQSLSKCSSLEGLYLNNNSLLGKIPRWLGNLTRL 342 (717)
Q Consensus 263 ~~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L 342 (717)
+. .+++|+.|+++++.....+| .+..+++|++|++++|.....+|..+..+++|+.|++++|...+.+|..+ .+++|
T Consensus 630 ~~-~l~~Lk~L~Ls~~~~l~~ip-~ls~l~~Le~L~L~~c~~L~~lp~si~~L~~L~~L~L~~c~~L~~Lp~~i-~l~sL 706 (1153)
T PLN03210 630 VH-SLTGLRNIDLRGSKNLKEIP-DLSMATNLETLKLSDCSSLVELPSSIQYLNKLEDLDMSRCENLEILPTGI-NLKSL 706 (1153)
T ss_pred cc-cCCCCCEEECCCCCCcCcCC-ccccCCcccEEEecCCCCccccchhhhccCCCCEEeCCCCCCcCccCCcC-CCCCC
Confidence 42 35666666666544332333 24555666666666655444555556666666666666654433445433 45566
Q ss_pred CEEEccCCcccCCcccccCCCCCCCEEEccCCcCcccCCCccccccccEEeccCccccc------ccCccccCCCCcCCE
Q 005038 343 QYIIMPNNHLEGPIPVEFCQLDSLQILDISDNNISGSLPSCFHPLSIKQVHLSKNMLHG------QLKRGTFFNCSSLVT 416 (717)
Q Consensus 343 ~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~L~~L~l~~n~~~~------~~~~~~~~~~~~L~~ 416 (717)
+.|++++|......|.. .++|+.|++++|.+. .+|......+|+.|.+.++.... .+....+...++|++
T Consensus 707 ~~L~Lsgc~~L~~~p~~---~~nL~~L~L~~n~i~-~lP~~~~l~~L~~L~l~~~~~~~l~~~~~~l~~~~~~~~~sL~~ 782 (1153)
T PLN03210 707 YRLNLSGCSRLKSFPDI---STNISWLDLDETAIE-EFPSNLRLENLDELILCEMKSEKLWERVQPLTPLMTMLSPSLTR 782 (1153)
T ss_pred CEEeCCCCCCccccccc---cCCcCeeecCCCccc-cccccccccccccccccccchhhccccccccchhhhhccccchh
Confidence 66666665433333321 245566666666554 33333344555555554432110 011111223456677
Q ss_pred EeCCCCcCCcccchhhhCCCCCcEEEcCCCccccccchhccCCCCCCEEEccCCcCccCCCcccccccccccccCCCCCC
Q 005038 417 LDLSYNRLNGSIPDWVDGLSQLSHLILGHNNLEGEVSVQLCELNQLQLLDLSNNNLHGPIPPCFDNTTLHESYSNSSSPD 496 (717)
Q Consensus 417 L~L~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~~~~~~ 496 (717)
|++++|.....+|..+.++++|+.|++++|...+.+|... .+++|+.|++++|......|..
T Consensus 783 L~Ls~n~~l~~lP~si~~L~~L~~L~Ls~C~~L~~LP~~~-~L~sL~~L~Ls~c~~L~~~p~~----------------- 844 (1153)
T PLN03210 783 LFLSDIPSLVELPSSIQNLHKLEHLEIENCINLETLPTGI-NLESLESLDLSGCSRLRTFPDI----------------- 844 (1153)
T ss_pred eeCCCCCCccccChhhhCCCCCCEEECCCCCCcCeeCCCC-CccccCEEECCCCCcccccccc-----------------
Confidence 7777666555566666667777777776664333444443 5666777777666433222210
Q ss_pred cchhhhhhcccccccccccccceEEEeeccceeeeccccccccceeeCCCCccCCCCcccccCCccCCeEeCCCcccCCC
Q 005038 497 EQFEIFFSIEGHQGFLEKQNHEIFEFTTKNIAYIYQGKVLSLLSGLDLSCNKLIGHIPPQIGNLTRIQTLNLSHNNLTGS 576 (717)
Q Consensus 497 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~ 576 (717)
.++|+.|+|++|.++ .+|..+..+++|+.|++++|+-...
T Consensus 845 ---------------------------------------~~nL~~L~Ls~n~i~-~iP~si~~l~~L~~L~L~~C~~L~~ 884 (1153)
T PLN03210 845 ---------------------------------------STNISDLNLSRTGIE-EVPWWIEKFSNLSFLDMNGCNNLQR 884 (1153)
T ss_pred ---------------------------------------ccccCEeECCCCCCc-cChHHHhcCCCCCEEECCCCCCcCc
Confidence 124667777777766 4566677777777777776433334
Q ss_pred CCcCCCCCCCCCEEECCCCc
Q 005038 577 IPSTFSNLKHVESLDLSNNK 596 (717)
Q Consensus 577 ~p~~~~~l~~L~~L~L~~N~ 596 (717)
+|..+..+++|+.+++++|.
T Consensus 885 l~~~~~~L~~L~~L~l~~C~ 904 (1153)
T PLN03210 885 VSLNISKLKHLETVDFSDCG 904 (1153)
T ss_pred cCcccccccCCCeeecCCCc
Confidence 55566667777777777765
No 14
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=99.90 E-value=3.4e-22 Score=235.33 Aligned_cols=342 Identities=22% Similarity=0.271 Sum_probs=246.6
Q ss_pred ccccccCCCCcEEECCCCC------CCccCCccccCCC-CCCEEEccCCccccccchhhhhCCCCCCEEEccCcccCccC
Q 005038 212 VKIGDVLPSLYVFNNSMNA------LDGSIPSSFGNMK-FLQILDLSNNHLTGEIPEHLAVGCVNLQFLALSNNNLQGHL 284 (717)
Q Consensus 212 ~~~~~~l~~L~~L~l~~n~------~~~~~~~~l~~l~-~L~~L~Ls~n~l~~~~~~~~~~~~~~L~~L~L~~n~i~~~~ 284 (717)
...+..+++|+.|.+..+. +...+|..+..++ +|+.|.+.++.+. .+|..+. ..+|++|+++++.+. ..
T Consensus 551 ~~aF~~m~~L~~L~~~~~~~~~~~~~~~~lp~~~~~lp~~Lr~L~~~~~~l~-~lP~~f~--~~~L~~L~L~~s~l~-~L 626 (1153)
T PLN03210 551 ENAFKGMRNLLFLKFYTKKWDQKKEVRWHLPEGFDYLPPKLRLLRWDKYPLR-CMPSNFR--PENLVKLQMQGSKLE-KL 626 (1153)
T ss_pred HHHHhcCccccEEEEecccccccccceeecCcchhhcCcccEEEEecCCCCC-CCCCcCC--ccCCcEEECcCcccc-cc
Confidence 3445557788888775543 2234566666653 5888888888887 7777663 678888888888876 35
Q ss_pred cccccCCCCCCeEECcCCcCcccCcccccCCCCCCEEEccCCcCcCcCCcccCCCCCCCEEEccCCcccCCcccccCCCC
Q 005038 285 FSRNFNLTNLQWLQLEGNRFVGEIPQSLSKCSSLEGLYLNNNSLLGKIPRWLGNLTRLQYIIMPNNHLEGPIPVEFCQLD 364 (717)
Q Consensus 285 ~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~ 364 (717)
+..+..+++|++|+|+++.....+|. +..+++|++|++++|.....+|..+..+++|+.|++++|...+.+|..+ .++
T Consensus 627 ~~~~~~l~~Lk~L~Ls~~~~l~~ip~-ls~l~~Le~L~L~~c~~L~~lp~si~~L~~L~~L~L~~c~~L~~Lp~~i-~l~ 704 (1153)
T PLN03210 627 WDGVHSLTGLRNIDLRGSKNLKEIPD-LSMATNLETLKLSDCSSLVELPSSIQYLNKLEDLDMSRCENLEILPTGI-NLK 704 (1153)
T ss_pred ccccccCCCCCEEECCCCCCcCcCCc-cccCCcccEEEecCCCCccccchhhhccCCCCEEeCCCCCCcCccCCcC-CCC
Confidence 66677788888888887765445554 7778888888888887666778888888888888888875444556554 678
Q ss_pred CCCEEEccCCcCcccCCCccccccccEEeccCcccccccCccccCCCCcCCEEeCCCCcCCc-------ccchhhhCCCC
Q 005038 365 SLQILDISDNNISGSLPSCFHPLSIKQVHLSKNMLHGQLKRGTFFNCSSLVTLDLSYNRLNG-------SIPDWVDGLSQ 437 (717)
Q Consensus 365 ~L~~L~l~~n~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~L~~n~~~~-------~~~~~~~~l~~ 437 (717)
+|+.|++++|.....+|.. ..+|+.|++++|.+. .++.. + .+++|++|++.++.... ..+..+...++
T Consensus 705 sL~~L~Lsgc~~L~~~p~~--~~nL~~L~L~~n~i~-~lP~~-~-~l~~L~~L~l~~~~~~~l~~~~~~l~~~~~~~~~s 779 (1153)
T PLN03210 705 SLYRLNLSGCSRLKSFPDI--STNISWLDLDETAIE-EFPSN-L-RLENLDELILCEMKSEKLWERVQPLTPLMTMLSPS 779 (1153)
T ss_pred CCCEEeCCCCCCccccccc--cCCcCeeecCCCccc-ccccc-c-cccccccccccccchhhccccccccchhhhhcccc
Confidence 8888888888665555533 457888888888763 44433 2 46777777777643211 11222233568
Q ss_pred CcEEEcCCCccccccchhccCCCCCCEEEccCCcCccCCCcccccccccccccCCCCCCcchhhhhhccccccccccccc
Q 005038 438 LSHLILGHNNLEGEVSVQLCELNQLQLLDLSNNNLHGPIPPCFDNTTLHESYSNSSSPDEQFEIFFSIEGHQGFLEKQNH 517 (717)
Q Consensus 438 L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 517 (717)
|+.|++++|.....+|..+..+++|+.|++++|...+.+|...
T Consensus 780 L~~L~Ls~n~~l~~lP~si~~L~~L~~L~Ls~C~~L~~LP~~~------------------------------------- 822 (1153)
T PLN03210 780 LTRLFLSDIPSLVELPSSIQNLHKLEHLEIENCINLETLPTGI------------------------------------- 822 (1153)
T ss_pred chheeCCCCCCccccChhhhCCCCCCEEECCCCCCcCeeCCCC-------------------------------------
Confidence 8888888887776778888888888888888876443344321
Q ss_pred ceEEEeeccceeeeccccccccceeeCCCCccCCCCcccccCCccCCeEeCCCcccCCCCCcCCCCCCCCCEEECCCCcC
Q 005038 518 EIFEFTTKNIAYIYQGKVLSLLSGLDLSCNKLIGHIPPQIGNLTRIQTLNLSHNNLTGSIPSTFSNLKHVESLDLSNNKL 597 (717)
Q Consensus 518 ~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~N~i 597 (717)
.+++|+.|++++|......|.. .++|++|+|++|.++ .+|..+..+++|+.|++++|+-
T Consensus 823 -----------------~L~sL~~L~Ls~c~~L~~~p~~---~~nL~~L~Ls~n~i~-~iP~si~~l~~L~~L~L~~C~~ 881 (1153)
T PLN03210 823 -----------------NLESLESLDLSGCSRLRTFPDI---STNISDLNLSRTGIE-EVPWWIEKFSNLSFLDMNGCNN 881 (1153)
T ss_pred -----------------CccccCEEECCCCCcccccccc---ccccCEeECCCCCCc-cChHHHhcCCCCCEEECCCCCC
Confidence 2457999999998765555543 368999999999998 6888999999999999999766
Q ss_pred CccCchhhcCCCCCCEEeccCCcCe
Q 005038 598 NGKIPHQLVELKTLEVFSVAYNNLS 622 (717)
Q Consensus 598 ~~~~p~~~~~l~~L~~L~l~~N~l~ 622 (717)
...+|..+..+++|+.+++++|.--
T Consensus 882 L~~l~~~~~~L~~L~~L~l~~C~~L 906 (1153)
T PLN03210 882 LQRVSLNISKLKHLETVDFSDCGAL 906 (1153)
T ss_pred cCccCcccccccCCCeeecCCCccc
Confidence 6678888889999999999999643
No 15
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=99.84 E-value=3.6e-20 Score=201.73 Aligned_cols=81 Identities=28% Similarity=0.369 Sum_probs=43.8
Q ss_pred ccceeeCCCCccCCCCcccccCCccCCeEeCCCcccCCCCCcCCCCCCCCCEEECCCCcCCccCchhhcCCCCCCEEecc
Q 005038 538 LLSGLDLSCNKLIGHIPPQIGNLTRIQTLNLSHNNLTGSIPSTFSNLKHVESLDLSNNKLNGKIPHQLVELKTLEVFSVA 617 (717)
Q Consensus 538 ~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~N~i~~~~p~~~~~l~~L~~L~l~ 617 (717)
+|+.|++++|++++ +|.. .++|+.|++++|+++ .+|.. ..+|+.|++++|+++ .+|+.+..+++|+.|+++
T Consensus 383 ~L~~LdLs~N~Lt~-LP~l---~s~L~~LdLS~N~Ls-sIP~l---~~~L~~L~Ls~NqLt-~LP~sl~~L~~L~~LdLs 453 (788)
T PRK15387 383 GLKELIVSGNRLTS-LPVL---PSELKELMVSGNRLT-SLPML---PSGLLSLSVYRNQLT-RLPESLIHLSSETTVNLE 453 (788)
T ss_pred ccceEEecCCcccC-CCCc---ccCCCEEEccCCcCC-CCCcc---hhhhhhhhhccCccc-ccChHHhhccCCCeEECC
Confidence 35555555555553 3322 235556666666665 24432 234555666666665 455556666666666666
Q ss_pred CCcCeecCCC
Q 005038 618 YNNLSGEIPE 627 (717)
Q Consensus 618 ~N~l~~~~p~ 627 (717)
+|++++..|.
T Consensus 454 ~N~Ls~~~~~ 463 (788)
T PRK15387 454 GNPLSERTLQ 463 (788)
T ss_pred CCCCCchHHH
Confidence 6666655444
No 16
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=99.83 E-value=4.5e-20 Score=200.98 Aligned_cols=268 Identities=27% Similarity=0.367 Sum_probs=207.9
Q ss_pred CCCCEEEccCCccccccchhhhhCCCCCCEEEccCcccCccCcccccCCCCCCeEECcCCcCcccCcccccCCCCCCEEE
Q 005038 243 KFLQILDLSNNHLTGEIPEHLAVGCVNLQFLALSNNNLQGHLFSRNFNLTNLQWLQLEGNRFVGEIPQSLSKCSSLEGLY 322 (717)
Q Consensus 243 ~~L~~L~Ls~n~l~~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ 322 (717)
..-..|+++.+.++ .+|..+. ++|+.|++++|+++. +|. ..++|++|++++|+++. +|.. .++|+.|+
T Consensus 201 ~~~~~LdLs~~~Lt-sLP~~l~---~~L~~L~L~~N~Lt~-LP~---lp~~Lk~LdLs~N~Lts-LP~l---p~sL~~L~ 268 (788)
T PRK15387 201 NGNAVLNVGESGLT-TLPDCLP---AHITTLVIPDNNLTS-LPA---LPPELRTLEVSGNQLTS-LPVL---PPGLLELS 268 (788)
T ss_pred CCCcEEEcCCCCCC-cCCcchh---cCCCEEEccCCcCCC-CCC---CCCCCcEEEecCCccCc-ccCc---ccccceee
Confidence 34678999999998 8898764 489999999999985 443 25889999999999984 4542 46899999
Q ss_pred ccCCcCcCcCCcccCCCCCCCEEEccCCcccCCcccccCCCCCCCEEEccCCcCcccCCCccccccccEEeccCcccccc
Q 005038 323 LNNNSLLGKIPRWLGNLTRLQYIIMPNNHLEGPIPVEFCQLDSLQILDISDNNISGSLPSCFHPLSIKQVHLSKNMLHGQ 402 (717)
Q Consensus 323 L~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~L~~L~l~~n~~~~~ 402 (717)
+++|.+. .+|.. ..+|+.|++++|+++. +|. ..++|+.|++++|++.+. |.. +..|+.|++++|.+.+
T Consensus 269 Ls~N~L~-~Lp~l---p~~L~~L~Ls~N~Lt~-LP~---~p~~L~~LdLS~N~L~~L-p~l--p~~L~~L~Ls~N~L~~- 336 (788)
T PRK15387 269 IFSNPLT-HLPAL---PSGLCKLWIFGNQLTS-LPV---LPPGLQELSVSDNQLASL-PAL--PSELCKLWAYNNQLTS- 336 (788)
T ss_pred ccCCchh-hhhhc---hhhcCEEECcCCcccc-ccc---cccccceeECCCCccccC-CCC--cccccccccccCcccc-
Confidence 9999887 45543 2578899999999985 443 347899999999999864 332 4568889999998853
Q ss_pred cCccccCCCCcCCEEeCCCCcCCcccchhhhCCCCCcEEEcCCCccccccchhccCCCCCCEEEccCCcCccCCCccccc
Q 005038 403 LKRGTFFNCSSLVTLDLSYNRLNGSIPDWVDGLSQLSHLILGHNNLEGEVSVQLCELNQLQLLDLSNNNLHGPIPPCFDN 482 (717)
Q Consensus 403 ~~~~~~~~~~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~ 482 (717)
++.. ..+|++|++++|++++ +|.. .++|+.|++++|++.. +|.. ..+|+.|++++|++++ +|..
T Consensus 337 LP~l----p~~Lq~LdLS~N~Ls~-LP~l---p~~L~~L~Ls~N~L~~-LP~l---~~~L~~LdLs~N~Lt~-LP~l--- 400 (788)
T PRK15387 337 LPTL----PSGLQELSVSDNQLAS-LPTL---PSELYKLWAYNNRLTS-LPAL---PSGLKELIVSGNRLTS-LPVL--- 400 (788)
T ss_pred cccc----ccccceEecCCCccCC-CCCC---Ccccceehhhcccccc-Cccc---ccccceEEecCCcccC-CCCc---
Confidence 4431 2579999999999985 4542 3678899999999985 4432 3579999999999874 2221
Q ss_pred ccccccccCCCCCCcchhhhhhcccccccccccccceEEEeeccceeeeccccccccceeeCCCCccCCCCcccccCCcc
Q 005038 483 TTLHESYSNSSSPDEQFEIFFSIEGHQGFLEKQNHEIFEFTTKNIAYIYQGKVLSLLSGLDLSCNKLIGHIPPQIGNLTR 562 (717)
Q Consensus 483 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~ 562 (717)
.+.|+.|++++|++.+ +|.. ..+
T Consensus 401 -----------------------------------------------------~s~L~~LdLS~N~Lss-IP~l---~~~ 423 (788)
T PRK15387 401 -----------------------------------------------------PSELKELMVSGNRLTS-LPML---PSG 423 (788)
T ss_pred -----------------------------------------------------ccCCCEEEccCCcCCC-CCcc---hhh
Confidence 1268999999999985 5643 357
Q ss_pred CCeEeCCCcccCCCCCcCCCCCCCCCEEECCCCcCCccCchhhcCC
Q 005038 563 IQTLNLSHNNLTGSIPSTFSNLKHVESLDLSNNKLNGKIPHQLVEL 608 (717)
Q Consensus 563 L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~N~i~~~~p~~~~~l 608 (717)
|+.|++++|+++ .+|..+.++++|+.|+|++|++++..|..+..+
T Consensus 424 L~~L~Ls~NqLt-~LP~sl~~L~~L~~LdLs~N~Ls~~~~~~L~~l 468 (788)
T PRK15387 424 LLSLSVYRNQLT-RLPESLIHLSSETTVNLEGNPLSERTLQALREI 468 (788)
T ss_pred hhhhhhccCccc-ccChHHhhccCCCeEECCCCCCCchHHHHHHHH
Confidence 889999999999 789999999999999999999998888776443
No 17
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.74 E-value=6.3e-18 Score=185.76 Aligned_cols=116 Identities=27% Similarity=0.382 Sum_probs=51.8
Q ss_pred CEEEccCCccccccchhhhhCCCCCCEEEccCcccCccCcccccCCCCCCeEECcCCcCcccCcccccCCCCCCEEEccC
Q 005038 246 QILDLSNNHLTGEIPEHLAVGCVNLQFLALSNNNLQGHLFSRNFNLTNLQWLQLEGNRFVGEIPQSLSKCSSLEGLYLNN 325 (717)
Q Consensus 246 ~~L~Ls~n~l~~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~ 325 (717)
..|+++++.++ .+|..+ .++++.|++++|+++. +|..+. ++|++|++++|.++ .+|..+. .+|+.|++++
T Consensus 181 ~~L~L~~~~Lt-sLP~~I---p~~L~~L~Ls~N~Lts-LP~~l~--~nL~~L~Ls~N~Lt-sLP~~l~--~~L~~L~Ls~ 250 (754)
T PRK15370 181 TELRLKILGLT-TIPACI---PEQITTLILDNNELKS-LPENLQ--GNIKTLYANSNQLT-SIPATLP--DTIQEMELSI 250 (754)
T ss_pred eEEEeCCCCcC-cCCccc---ccCCcEEEecCCCCCc-CChhhc--cCCCEEECCCCccc-cCChhhh--ccccEEECcC
Confidence 44445444444 444332 2344455555554442 222221 34555555555544 2233222 2455555555
Q ss_pred CcCcCcCCcccCCCCCCCEEEccCCcccCCcccccCCCCCCCEEEccCCcCc
Q 005038 326 NSLLGKIPRWLGNLTRLQYIIMPNNHLEGPIPVEFCQLDSLQILDISDNNIS 377 (717)
Q Consensus 326 n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~ 377 (717)
|.+. .+|..+. .+|+.|++++|++.. +|..+. ++|+.|++++|+++
T Consensus 251 N~L~-~LP~~l~--s~L~~L~Ls~N~L~~-LP~~l~--~sL~~L~Ls~N~Lt 296 (754)
T PRK15370 251 NRIT-ELPERLP--SALQSLDLFHNKISC-LPENLP--EELRYLSVYDNSIR 296 (754)
T ss_pred CccC-cCChhHh--CCCCEEECcCCccCc-cccccC--CCCcEEECCCCccc
Confidence 5554 3343332 345555555555552 333332 34555555555554
No 18
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.73 E-value=1.2e-17 Score=183.60 Aligned_cols=96 Identities=27% Similarity=0.295 Sum_probs=41.5
Q ss_pred cCEEEccCCcCCccCCccccccCCCCcEEECCCCCCCccCCccccCCCCCCEEEccCCccccccchhhhhCCCCCCEEEc
Q 005038 196 LRQLDVSNNNIRGHIPVKIGDVLPSLYVFNNSMNALDGSIPSSFGNMKFLQILDLSNNHLTGEIPEHLAVGCVNLQFLAL 275 (717)
Q Consensus 196 L~~L~ls~n~i~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~L~~L~L 275 (717)
...|+++++.++ .+|..+. +.++.|++++|.++ .+|..+. ++|++|++++|.++ .+|..+. .+|+.|++
T Consensus 180 ~~~L~L~~~~Lt-sLP~~Ip---~~L~~L~Ls~N~Lt-sLP~~l~--~nL~~L~Ls~N~Lt-sLP~~l~---~~L~~L~L 248 (754)
T PRK15370 180 KTELRLKILGLT-TIPACIP---EQITTLILDNNELK-SLPENLQ--GNIKTLYANSNQLT-SIPATLP---DTIQEMEL 248 (754)
T ss_pred ceEEEeCCCCcC-cCCcccc---cCCcEEEecCCCCC-cCChhhc--cCCCEEECCCCccc-cCChhhh---ccccEEEC
Confidence 445555555554 3443322 24445555555444 2333222 24555555555554 4444332 23445555
Q ss_pred cCcccCccCcccccCCCCCCeEECcCCcCc
Q 005038 276 SNNNLQGHLFSRNFNLTNLQWLQLEGNRFV 305 (717)
Q Consensus 276 ~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~ 305 (717)
++|.+.. +|..+. .+|++|++++|++.
T Consensus 249 s~N~L~~-LP~~l~--s~L~~L~Ls~N~L~ 275 (754)
T PRK15370 249 SINRITE-LPERLP--SALQSLDLFHNKIS 275 (754)
T ss_pred cCCccCc-CChhHh--CCCCEEECcCCccC
Confidence 5544442 222221 23444444444444
No 19
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=99.72 E-value=4.1e-19 Score=182.36 Aligned_cols=84 Identities=25% Similarity=0.333 Sum_probs=42.4
Q ss_pred ccceeeCCCCccCCCCccccc-----CCccCCeEeCCCcccCC----CCCcCCCCCCCCCEEECCCCcCCcc----Cchh
Q 005038 538 LLSGLDLSCNKLIGHIPPQIG-----NLTRIQTLNLSHNNLTG----SIPSTFSNLKHVESLDLSNNKLNGK----IPHQ 604 (717)
Q Consensus 538 ~L~~L~L~~n~l~~~~~~~l~-----~l~~L~~L~Ls~n~l~~----~~p~~~~~l~~L~~L~L~~N~i~~~----~p~~ 604 (717)
.|+.|++++|.+++.....+. ..+.|++|++++|.+++ .+...+..+++|+++++++|.+... ....
T Consensus 222 ~L~~L~ls~n~l~~~~~~~l~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~~~~~~~~L~~l~l~~N~l~~~~~~~~~~~ 301 (319)
T cd00116 222 SLEVLNLGDNNLTDAGAAALASALLSPNISLLTLSLSCNDITDDGAKDLAEVLAEKESLLELDLRGNKFGEEGAQLLAES 301 (319)
T ss_pred CCCEEecCCCcCchHHHHHHHHHHhccCCCceEEEccCCCCCcHHHHHHHHHHhcCCCccEEECCCCCCcHHHHHHHHHH
Confidence 455555555555432221111 12566666666666541 1223344456666677777666633 2233
Q ss_pred hcCC-CCCCEEeccCCcC
Q 005038 605 LVEL-KTLEVFSVAYNNL 621 (717)
Q Consensus 605 ~~~l-~~L~~L~l~~N~l 621 (717)
+... +.|+.+++.+|++
T Consensus 302 ~~~~~~~~~~~~~~~~~~ 319 (319)
T cd00116 302 LLEPGNELESLWVKDDSF 319 (319)
T ss_pred HhhcCCchhhcccCCCCC
Confidence 3333 5666666666653
No 20
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=99.70 E-value=1.6e-18 Score=177.94 Aligned_cols=219 Identities=23% Similarity=0.293 Sum_probs=113.9
Q ss_pred cccCCCCCCEEEccCCcCcCcCCcccCCCC---CCCEEEccCCcccC----CcccccCCC-CCCCEEEccCCcCcccCCC
Q 005038 311 SLSKCSSLEGLYLNNNSLLGKIPRWLGNLT---RLQYIIMPNNHLEG----PIPVEFCQL-DSLQILDISDNNISGSLPS 382 (717)
Q Consensus 311 ~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~---~L~~L~l~~n~~~~----~~~~~~~~l-~~L~~L~l~~n~~~~~~~~ 382 (717)
.+..+++|+.|++++|.+.+..+..+..+. +|+.|++++|.+.+ .+...+..+ ++|+.|++++|.+++....
T Consensus 76 ~l~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~ls~~~~~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~ 155 (319)
T cd00116 76 GLTKGCGLQELDLSDNALGPDGCGVLESLLRSSSLQELKLNNNGLGDRGLRLLAKGLKDLPPALEKLVLGRNRLEGASCE 155 (319)
T ss_pred HHHhcCceeEEEccCCCCChhHHHHHHHHhccCcccEEEeeCCccchHHHHHHHHHHHhCCCCceEEEcCCCcCCchHHH
Confidence 344455555555555555433333332222 25555555555442 112223334 5556666666555421100
Q ss_pred ccccccccEEeccCcccccccCccccCCCCcCCEEeCCCCcCCcc----cchhhhCCCCCcEEEcCCCcccccc----ch
Q 005038 383 CFHPLSIKQVHLSKNMLHGQLKRGTFFNCSSLVTLDLSYNRLNGS----IPDWVDGLSQLSHLILGHNNLEGEV----SV 454 (717)
Q Consensus 383 ~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~L~~n~~~~~----~~~~~~~l~~L~~L~L~~n~l~~~~----~~ 454 (717)
.+. ..+..+++|++|++++|.+.+. ++..+..+++|+.|++++|.+++.. ..
T Consensus 156 -------------------~~~-~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~ 215 (319)
T cd00116 156 -------------------ALA-KALRANRDLKELNLANNGIGDAGIRALAEGLKANCNLEVLDLNNNGLTDEGASALAE 215 (319)
T ss_pred -------------------HHH-HHHHhCCCcCEEECcCCCCchHHHHHHHHHHHhCCCCCEEeccCCccChHHHHHHHH
Confidence 011 1244556677777777766532 2223444567777777777765332 23
Q ss_pred hccCCCCCCEEEccCCcCccCCCcccccccccccccCCCCCCcchhhhhhcccccccccccccceEEEeeccceeeeccc
Q 005038 455 QLCELNQLQLLDLSNNNLHGPIPPCFDNTTLHESYSNSSSPDEQFEIFFSIEGHQGFLEKQNHEIFEFTTKNIAYIYQGK 534 (717)
Q Consensus 455 ~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 534 (717)
.+..+++|++|++++|++++.....+...- . .
T Consensus 216 ~~~~~~~L~~L~ls~n~l~~~~~~~l~~~~----------------------------------------------~--~ 247 (319)
T cd00116 216 TLASLKSLEVLNLGDNNLTDAGAAALASAL----------------------------------------------L--S 247 (319)
T ss_pred HhcccCCCCEEecCCCcCchHHHHHHHHHH----------------------------------------------h--c
Confidence 345667777777777776531111110000 0 0
Q ss_pred cccccceeeCCCCccCCC----CcccccCCccCCeEeCCCcccCCC----CCcCCCCC-CCCCEEECCCCcC
Q 005038 535 VLSLLSGLDLSCNKLIGH----IPPQIGNLTRIQTLNLSHNNLTGS----IPSTFSNL-KHVESLDLSNNKL 597 (717)
Q Consensus 535 ~l~~L~~L~L~~n~l~~~----~~~~l~~l~~L~~L~Ls~n~l~~~----~p~~~~~l-~~L~~L~L~~N~i 597 (717)
..+.|+.|++++|.+++. +...+..+++|+++++++|.++.. ....+... +.|++|++.+|++
T Consensus 248 ~~~~L~~L~l~~n~i~~~~~~~l~~~~~~~~~L~~l~l~~N~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 319 (319)
T cd00116 248 PNISLLTLSLSCNDITDDGAKDLAEVLAEKESLLELDLRGNKFGEEGAQLLAESLLEPGNELESLWVKDDSF 319 (319)
T ss_pred cCCCceEEEccCCCCCcHHHHHHHHHHhcCCCccEEECCCCCCcHHHHHHHHHHHhhcCCchhhcccCCCCC
Confidence 123677788888877621 233455667888888888888743 33334444 6788888887764
No 21
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.66 E-value=2.3e-18 Score=145.42 Aligned_cols=160 Identities=30% Similarity=0.491 Sum_probs=88.7
Q ss_pred cccccEEeccCcccccccCccccCCCCcCCEEeCCCCcCCcccchhhhCCCCCcEEEcCCCccccccchhccCCCCCCEE
Q 005038 386 PLSIKQVHLSKNMLHGQLKRGTFFNCSSLVTLDLSYNRLNGSIPDWVDGLSQLSHLILGHNNLEGEVSVQLCELNQLQLL 465 (717)
Q Consensus 386 ~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L 465 (717)
...++.|.++.|+++ .+++. ++.+.+|+.|++++|++. ..|..++.+++|+.|+++-|++. ..|..|+.+|.|+.|
T Consensus 32 ~s~ITrLtLSHNKl~-~vppn-ia~l~nlevln~~nnqie-~lp~~issl~klr~lnvgmnrl~-~lprgfgs~p~levl 107 (264)
T KOG0617|consen 32 MSNITRLTLSHNKLT-VVPPN-IAELKNLEVLNLSNNQIE-ELPTSISSLPKLRILNVGMNRLN-ILPRGFGSFPALEVL 107 (264)
T ss_pred hhhhhhhhcccCcee-ecCCc-HHHhhhhhhhhcccchhh-hcChhhhhchhhhheecchhhhh-cCccccCCCchhhhh
Confidence 334444444444442 23333 555666777777777766 45566666777777777777666 566667777777777
Q ss_pred EccCCcCccC-CCcccccccccccccCCCCCCcchhhhhhcccccccccccccceEEEeeccceeeeccccccccceeeC
Q 005038 466 DLSNNNLHGP-IPPCFDNTTLHESYSNSSSPDEQFEIFFSIEGHQGFLEKQNHEIFEFTTKNIAYIYQGKVLSLLSGLDL 544 (717)
Q Consensus 466 ~L~~n~l~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L 544 (717)
|+.+|++... .|.-|.. ++.|+.|+|
T Consensus 108 dltynnl~e~~lpgnff~-----------------------------------------------------m~tlralyl 134 (264)
T KOG0617|consen 108 DLTYNNLNENSLPGNFFY-----------------------------------------------------MTTLRALYL 134 (264)
T ss_pred hccccccccccCCcchhH-----------------------------------------------------HHHHHHHHh
Confidence 7777665431 1221111 224555555
Q ss_pred CCCccCCCCcccccCCccCCeEeCCCcccCCCCCcCCCCCCCCCEEECCCCcCCccCchhh
Q 005038 545 SCNKLIGHIPPQIGNLTRIQTLNLSHNNLTGSIPSTFSNLKHVESLDLSNNKLNGKIPHQL 605 (717)
Q Consensus 545 ~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~N~i~~~~p~~~ 605 (717)
+.|.+. .+|..++.+++|+.|.+.+|.+. .+|..++.++.|++|++.+|+++ .+|..+
T Consensus 135 ~dndfe-~lp~dvg~lt~lqil~lrdndll-~lpkeig~lt~lrelhiqgnrl~-vlppel 192 (264)
T KOG0617|consen 135 GDNDFE-ILPPDVGKLTNLQILSLRDNDLL-SLPKEIGDLTRLRELHIQGNRLT-VLPPEL 192 (264)
T ss_pred cCCCcc-cCChhhhhhcceeEEeeccCchh-hCcHHHHHHHHHHHHhcccceee-ecChhh
Confidence 555554 45555555555555555555555 45555555555555555555555 444333
No 22
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.55 E-value=1e-16 Score=135.54 Aligned_cols=156 Identities=28% Similarity=0.446 Sum_probs=104.8
Q ss_pred ccCCCCCCeEECcCCcCcccCcccccCCCCCCEEEccCCcCcCcCCcccCCCCCCCEEEccCCcccCCcccccCCCCCCC
Q 005038 288 NFNLTNLQWLQLEGNRFVGEIPQSLSKCSSLEGLYLNNNSLLGKIPRWLGNLTRLQYIIMPNNHLEGPIPVEFCQLDSLQ 367 (717)
Q Consensus 288 ~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~ 367 (717)
+..+.+++.|.|++|+++ .+|..++.+.+|+.|++++|++. ..|..++++++|+.|+++-|++. ..|..|+.++.|+
T Consensus 29 Lf~~s~ITrLtLSHNKl~-~vppnia~l~nlevln~~nnqie-~lp~~issl~klr~lnvgmnrl~-~lprgfgs~p~le 105 (264)
T KOG0617|consen 29 LFNMSNITRLTLSHNKLT-VVPPNIAELKNLEVLNLSNNQIE-ELPTSISSLPKLRILNVGMNRLN-ILPRGFGSFPALE 105 (264)
T ss_pred ccchhhhhhhhcccCcee-ecCCcHHHhhhhhhhhcccchhh-hcChhhhhchhhhheecchhhhh-cCccccCCCchhh
Confidence 346677888889999888 55667888999999999999887 67888889999999999988887 7888999999999
Q ss_pred EEEccCCcCccc-CCC-ccccccccEEeccCcccccccCccccCCCCcCCEEeCCCCcCCcccchhhhCCCCCcEEEcCC
Q 005038 368 ILDISDNNISGS-LPS-CFHPLSIKQVHLSKNMLHGQLKRGTFFNCSSLVTLDLSYNRLNGSIPDWVDGLSQLSHLILGH 445 (717)
Q Consensus 368 ~L~l~~n~~~~~-~~~-~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~L~~ 445 (717)
.||+.+|.+... .|. .|.+..|+.|++++|.+ ..+|.. .+.+++|+.|.+.+|.+- ..|..++.+..|++|.+++
T Consensus 106 vldltynnl~e~~lpgnff~m~tlralyl~dndf-e~lp~d-vg~lt~lqil~lrdndll-~lpkeig~lt~lrelhiqg 182 (264)
T KOG0617|consen 106 VLDLTYNNLNENSLPGNFFYMTTLRALYLGDNDF-EILPPD-VGKLTNLQILSLRDNDLL-SLPKEIGDLTRLRELHIQG 182 (264)
T ss_pred hhhccccccccccCCcchhHHHHHHHHHhcCCCc-ccCChh-hhhhcceeEEeeccCchh-hCcHHHHHHHHHHHHhccc
Confidence 999998887632 222 22244444444444444 122222 444555555555555444 3444445555555555555
Q ss_pred Cccc
Q 005038 446 NNLE 449 (717)
Q Consensus 446 n~l~ 449 (717)
|+++
T Consensus 183 nrl~ 186 (264)
T KOG0617|consen 183 NRLT 186 (264)
T ss_pred ceee
Confidence 5554
No 23
>PLN03150 hypothetical protein; Provisional
Probab=99.49 E-value=5.4e-14 Score=154.64 Aligned_cols=118 Identities=35% Similarity=0.612 Sum_probs=107.2
Q ss_pred ccceeeCCCCccCCCCcccccCCccCCeEeCCCcccCCCCCcCCCCCCCCCEEECCCCcCCccCchhhcCCCCCCEEecc
Q 005038 538 LLSGLDLSCNKLIGHIPPQIGNLTRIQTLNLSHNNLTGSIPSTFSNLKHVESLDLSNNKLNGKIPHQLVELKTLEVFSVA 617 (717)
Q Consensus 538 ~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~N~i~~~~p~~~~~l~~L~~L~l~ 617 (717)
.++.|+|++|.+.+.+|..+..+++|+.|+|++|.+.+.+|..++.+++|+.|+|++|++++.+|+.+..+++|+.|+++
T Consensus 419 ~v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls 498 (623)
T PLN03150 419 FIDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLN 498 (623)
T ss_pred EEEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECc
Confidence 47889999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCcCeecCCCCCccc-CCCCcccccCCcCCCCCCC-CCCC
Q 005038 618 YNNLSGEIPEWKAQF-ATFNESSYEGNTFLCGLPL-PICR 655 (717)
Q Consensus 618 ~N~l~~~~p~~~~~~-~~l~~~~~~~n~~~c~~~l-~~C~ 655 (717)
+|+++|.+|..+... ..+..+.+.+|+.+|+.|. ..|.
T Consensus 499 ~N~l~g~iP~~l~~~~~~~~~l~~~~N~~lc~~p~l~~C~ 538 (623)
T PLN03150 499 GNSLSGRVPAALGGRLLHRASFNFTDNAGLCGIPGLRACG 538 (623)
T ss_pred CCcccccCChHHhhccccCceEEecCCccccCCCCCCCCc
Confidence 999999999876543 3456778999999999764 3374
No 24
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=99.12 E-value=2.8e-12 Score=129.14 Aligned_cols=154 Identities=32% Similarity=0.504 Sum_probs=98.4
Q ss_pred cCCCCcCCEEeCCCCcCCcccchhhhCCCCCcEEEcCCCccccccchhccCCCCCCEEEccCCcCccCCCcccccccccc
Q 005038 408 FFNCSSLVTLDLSYNRLNGSIPDWVDGLSQLSHLILGHNNLEGEVSVQLCELNQLQLLDLSNNNLHGPIPPCFDNTTLHE 487 (717)
Q Consensus 408 ~~~~~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~ 487 (717)
+..+..|+.+.+..|.+. .+|..+..+..|+.++++.|++. ..|..++.++ |+.|-+++|+++.. |...+
T Consensus 94 ~~~f~~Le~liLy~n~~r-~ip~~i~~L~~lt~l~ls~NqlS-~lp~~lC~lp-Lkvli~sNNkl~~l-p~~ig------ 163 (722)
T KOG0532|consen 94 ACAFVSLESLILYHNCIR-TIPEAICNLEALTFLDLSSNQLS-HLPDGLCDLP-LKVLIVSNNKLTSL-PEEIG------ 163 (722)
T ss_pred HHHHHHHHHHHHHhccce-ecchhhhhhhHHHHhhhccchhh-cCChhhhcCc-ceeEEEecCccccC-Ccccc------
Confidence 333445555555555555 45555566666666666666665 4444455443 55666666665422 22111
Q ss_pred cccCCCCCCcchhhhhhcccccccccccccceEEEeeccceeeeccccccccceeeCCCCccCCCCcccccCCccCCeEe
Q 005038 488 SYSNSSSPDEQFEIFFSIEGHQGFLEKQNHEIFEFTTKNIAYIYQGKVLSLLSGLDLSCNKLIGHIPPQIGNLTRIQTLN 567 (717)
Q Consensus 488 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~ 567 (717)
....|..||.+.|++. .+|..++++.+|+.|+
T Consensus 164 -----------------------------------------------~~~tl~~ld~s~nei~-slpsql~~l~slr~l~ 195 (722)
T KOG0532|consen 164 -----------------------------------------------LLPTLAHLDVSKNEIQ-SLPSQLGYLTSLRDLN 195 (722)
T ss_pred -----------------------------------------------cchhHHHhhhhhhhhh-hchHHhhhHHHHHHHH
Confidence 1335777777777776 5667777888888888
Q ss_pred CCCcccCCCCCcCCCCCCCCCEEECCCCcCCccCchhhcCCCCCCEEeccCCcCe
Q 005038 568 LSHNNLTGSIPSTFSNLKHVESLDLSNNKLNGKIPHQLVELKTLEVFSVAYNNLS 622 (717)
Q Consensus 568 Ls~n~l~~~~p~~~~~l~~L~~L~L~~N~i~~~~p~~~~~l~~L~~L~l~~N~l~ 622 (717)
++.|++. .+|..+..| .|..||+|.|+++ .+|..|..|+.|++|-|.+|+++
T Consensus 196 vrRn~l~-~lp~El~~L-pLi~lDfScNkis-~iPv~fr~m~~Lq~l~LenNPLq 247 (722)
T KOG0532|consen 196 VRRNHLE-DLPEELCSL-PLIRLDFSCNKIS-YLPVDFRKMRHLQVLQLENNPLQ 247 (722)
T ss_pred Hhhhhhh-hCCHHHhCC-ceeeeecccCcee-ecchhhhhhhhheeeeeccCCCC
Confidence 8888877 455555644 3777888888887 77778888888888888888877
No 25
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=99.11 E-value=2.2e-12 Score=130.00 Aligned_cols=175 Identities=30% Similarity=0.456 Sum_probs=151.2
Q ss_pred CCCcCCEEeCCCCcCCcccchhhhCCCCCcEEEcCCCccccccchhccCCCCCCEEEccCCcCccCCCcccccccccccc
Q 005038 410 NCSSLVTLDLSYNRLNGSIPDWVDGLSQLSHLILGHNNLEGEVSVQLCELNQLQLLDLSNNNLHGPIPPCFDNTTLHESY 489 (717)
Q Consensus 410 ~~~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~ 489 (717)
.+.--...|++.|++. .+|..+..+..|+.+.+..|.+. .+|..++.+..|..+||+.|+++.. |..+..+
T Consensus 73 ~ltdt~~aDlsrNR~~-elp~~~~~f~~Le~liLy~n~~r-~ip~~i~~L~~lt~l~ls~NqlS~l-p~~lC~l------ 143 (722)
T KOG0532|consen 73 DLTDTVFADLSRNRFS-ELPEEACAFVSLESLILYHNCIR-TIPEAICNLEALTFLDLSSNQLSHL-PDGLCDL------ 143 (722)
T ss_pred cccchhhhhccccccc-cCchHHHHHHHHHHHHHHhccce-ecchhhhhhhHHHHhhhccchhhcC-ChhhhcC------
Confidence 3455577899999998 67888888899999999999998 7888999999999999999999743 3322222
Q ss_pred cCCCCCCcchhhhhhcccccccccccccceEEEeeccceeeeccccccccceeeCCCCccCCCCcccccCCccCCeEeCC
Q 005038 490 SNSSSPDEQFEIFFSIEGHQGFLEKQNHEIFEFTTKNIAYIYQGKVLSLLSGLDLSCNKLIGHIPPQIGNLTRIQTLNLS 569 (717)
Q Consensus 490 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls 569 (717)
-|+.|-+++|+++ .+|+.++.+..|..||.+
T Consensus 144 ------------------------------------------------pLkvli~sNNkl~-~lp~~ig~~~tl~~ld~s 174 (722)
T KOG0532|consen 144 ------------------------------------------------PLKVLIVSNNKLT-SLPEEIGLLPTLAHLDVS 174 (722)
T ss_pred ------------------------------------------------cceeEEEecCccc-cCCcccccchhHHHhhhh
Confidence 2889999999998 778889999999999999
Q ss_pred CcccCCCCCcCCCCCCCCCEEECCCCcCCccCchhhcCCCCCCEEeccCCcCeecCCCCCcccCCCCcccccCCcCC
Q 005038 570 HNNLTGSIPSTFSNLKHVESLDLSNNKLNGKIPHQLVELKTLEVFSVAYNNLSGEIPEWKAQFATFNESSYEGNTFL 646 (717)
Q Consensus 570 ~n~l~~~~p~~~~~l~~L~~L~L~~N~i~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~~~~l~~~~~~~n~~~ 646 (717)
.|.+. .+|..++++.+|+.|.+..|++. .+|+++..+ .|..||+|.|+++ .+|-.|..|..+..+.+++||..
T Consensus 175 ~nei~-slpsql~~l~slr~l~vrRn~l~-~lp~El~~L-pLi~lDfScNkis-~iPv~fr~m~~Lq~l~LenNPLq 247 (722)
T KOG0532|consen 175 KNEIQ-SLPSQLGYLTSLRDLNVRRNHLE-DLPEELCSL-PLIRLDFSCNKIS-YLPVDFRKMRHLQVLQLENNPLQ 247 (722)
T ss_pred hhhhh-hchHHhhhHHHHHHHHHhhhhhh-hCCHHHhCC-ceeeeecccCcee-ecchhhhhhhhheeeeeccCCCC
Confidence 99999 78889999999999999999998 677777754 5899999999999 78988999999999999999864
No 26
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=99.10 E-value=1.8e-11 Score=113.53 Aligned_cols=60 Identities=43% Similarity=0.487 Sum_probs=38.2
Q ss_pred CCcCCEEeCCCCcCCcccchhhhCCCCCcEEEcCCCccccccchhccCCCCCCEEEccCCcCc
Q 005038 411 CSSLVTLDLSYNRLNGSIPDWVDGLSQLSHLILGHNNLEGEVSVQLCELNQLQLLDLSNNNLH 473 (717)
Q Consensus 411 ~~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~ 473 (717)
+..|+++||++|.|+ .+.+...-.|.++.|++++|.++... .+..+++|+.||+++|.++
T Consensus 283 Wq~LtelDLS~N~I~-~iDESvKL~Pkir~L~lS~N~i~~v~--nLa~L~~L~~LDLS~N~Ls 342 (490)
T KOG1259|consen 283 WQELTELDLSGNLIT-QIDESVKLAPKLRRLILSQNRIRTVQ--NLAELPQLQLLDLSGNLLA 342 (490)
T ss_pred Hhhhhhccccccchh-hhhhhhhhccceeEEeccccceeeeh--hhhhcccceEeecccchhH
Confidence 355677777777776 34455555677777777777776322 2566666666666666654
No 27
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=99.10 E-value=4.1e-11 Score=107.30 Aligned_cols=133 Identities=26% Similarity=0.240 Sum_probs=52.2
Q ss_pred ccCCCCCCeeeCCCCCCCCCcchhcc-CCCCCCEEeCCCCCCcccCCccccCCCCCCCEEECCCCcccCcCCcccccCCC
Q 005038 15 LCSLVHLQELYIASNDLRGSLPWCMA-NMTSLRILDVSSNQLTGSISSSPLVHLTSIEELMLSNNYFQIPISLEPLFNYS 93 (717)
Q Consensus 15 ~~~l~~L~~L~Ls~n~i~~~~~~~~~-~l~~L~~L~Ls~n~i~~~i~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~ 93 (717)
+.+..++++|+|++|.|+.+ +.++ .+.+|+.|||++|.|+ .++. +..+++|++|++++|.++. +.......++
T Consensus 15 ~~n~~~~~~L~L~~n~I~~I--e~L~~~l~~L~~L~Ls~N~I~-~l~~--l~~L~~L~~L~L~~N~I~~-i~~~l~~~lp 88 (175)
T PF14580_consen 15 YNNPVKLRELNLRGNQISTI--ENLGATLDKLEVLDLSNNQIT-KLEG--LPGLPRLKTLDLSNNRISS-ISEGLDKNLP 88 (175)
T ss_dssp -----------------------S--TT-TT--EEE-TTS--S---TT------TT--EEE--SS---S--CHHHHHH-T
T ss_pred cccccccccccccccccccc--cchhhhhcCCCEEECCCCCCc-cccC--ccChhhhhhcccCCCCCCc-cccchHHhCC
Confidence 66777899999999999854 3455 5789999999999998 7776 8889999999999999973 3322224689
Q ss_pred CCCEEEccCCcccccccccccccCCCccccEEEccCCCCCC--CCCchhhcCCCCCCEEEccCC
Q 005038 94 RLKIFNAENNEIKAEITESHSLIAPKFQLNTLSLSSNYGDG--FIFPKFLYHQHDLEYVDLSHI 155 (717)
Q Consensus 94 ~L~~L~l~~n~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~--~~~~~~l~~~~~L~~L~l~~~ 155 (717)
+|+.|++++|++.+... ...+..+++|+.|++.+|.... ..-...+..+++|+.||-...
T Consensus 89 ~L~~L~L~~N~I~~l~~--l~~L~~l~~L~~L~L~~NPv~~~~~YR~~vi~~lP~Lk~LD~~~V 150 (175)
T PF14580_consen 89 NLQELYLSNNKISDLNE--LEPLSSLPKLRVLSLEGNPVCEKKNYRLFVIYKLPSLKVLDGQDV 150 (175)
T ss_dssp T--EEE-TTS---SCCC--CGGGGG-TT--EEE-TT-GGGGSTTHHHHHHHH-TT-SEETTEET
T ss_pred cCCEEECcCCcCCChHH--hHHHHcCCCcceeeccCCcccchhhHHHHHHHHcChhheeCCEEc
Confidence 99999999999976432 3345667899999996554321 123346778999999987654
No 28
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=99.07 E-value=3.1e-11 Score=118.08 Aligned_cols=165 Identities=20% Similarity=0.205 Sum_probs=89.2
Q ss_pred cCCCCCCEEeCCCCCCcccCCc-cccCCCCCCCEEECCCCcccCcCCcc-cccCCCCCCEEEccCCcccccccccccccC
Q 005038 40 ANMTSLRILDVSSNQLTGSISS-SPLVHLTSIEELMLSNNYFQIPISLE-PLFNYSRLKIFNAENNEIKAEITESHSLIA 117 (717)
Q Consensus 40 ~~l~~L~~L~Ls~n~i~~~i~~-~~~~~l~~L~~L~L~~n~~~~~~~~~-~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~ 117 (717)
+++++|+...|.++.+. .++. .....|++++.|||++|-+..-.+.. ....+++|+.|+++.|++.......
T Consensus 118 sn~kkL~~IsLdn~~V~-~~~~~~~~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~----- 191 (505)
T KOG3207|consen 118 SNLKKLREISLDNYRVE-DAGIEEYSKILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFISSN----- 191 (505)
T ss_pred hhHHhhhheeecCcccc-ccchhhhhhhCCcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccCCcccc-----
Confidence 35667777777776664 3221 23455677777777777655222211 2245667777777776654321110
Q ss_pred CCccccEEEccCCCCCCCCCchhhcCCCCCCEEEccCCCCcccCChhhhhCCCCCCEEEccCCcCcccCccCcCCCCCcC
Q 005038 118 PKFQLNTLSLSSNYGDGFIFPKFLYHQHDLEYVDLSHIKMNGEFPNWLLENNTKLETLFLVNDSLAGPFRLPIHSHKRLR 197 (717)
Q Consensus 118 ~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~ 197 (717)
.-..+++|+.|.++.|.++-.-..++...+++|+.|++..|........+...++.|+
T Consensus 192 ----------------------~~~~l~~lK~L~l~~CGls~k~V~~~~~~fPsl~~L~L~~N~~~~~~~~~~~i~~~L~ 249 (505)
T KOG3207|consen 192 ----------------------TTLLLSHLKQLVLNSCGLSWKDVQWILLTFPSLEVLYLEANEIILIKATSTKILQTLQ 249 (505)
T ss_pred ----------------------chhhhhhhheEEeccCCCCHHHHHHHHHhCCcHHHhhhhcccccceecchhhhhhHHh
Confidence 0013456667777777666433444455667777777777754333344444556677
Q ss_pred EEEccCCcCCccCCccccccCCCCcEEECCCCCCC
Q 005038 198 QLDVSNNNIRGHIPVKIGDVLPSLYVFNNSMNALD 232 (717)
Q Consensus 198 ~L~ls~n~i~~~~~~~~~~~l~~L~~L~l~~n~~~ 232 (717)
.|||++|++-..--......++.|..|+++.+.+.
T Consensus 250 ~LdLs~N~li~~~~~~~~~~l~~L~~Lnls~tgi~ 284 (505)
T KOG3207|consen 250 ELDLSNNNLIDFDQGYKVGTLPGLNQLNLSSTGIA 284 (505)
T ss_pred hccccCCcccccccccccccccchhhhhccccCcc
Confidence 77777776652211122223555555555555544
No 29
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=99.04 E-value=3.1e-11 Score=111.97 Aligned_cols=136 Identities=28% Similarity=0.287 Sum_probs=109.5
Q ss_pred cccCCCCCCEEEccCCccccccchhhhhCCCCCCEEEccCcccCccCcccccCCCCCCeEECcCCcCcccCcccccCCCC
Q 005038 238 SFGNMKFLQILDLSNNHLTGEIPEHLAVGCVNLQFLALSNNNLQGHLFSRNFNLTNLQWLQLEGNRFVGEIPQSLSKCSS 317 (717)
Q Consensus 238 ~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~ 317 (717)
.+.....|+.+|+|+|.|+ .+.+.+- -.+.++.|++|+|.|..+ ..+..+++|+.|||++|.++ ....+-.++.+
T Consensus 279 ~~dTWq~LtelDLS~N~I~-~iDESvK-L~Pkir~L~lS~N~i~~v--~nLa~L~~L~~LDLS~N~Ls-~~~Gwh~KLGN 353 (490)
T KOG1259|consen 279 SADTWQELTELDLSGNLIT-QIDESVK-LAPKLRRLILSQNRIRTV--QNLAELPQLQLLDLSGNLLA-ECVGWHLKLGN 353 (490)
T ss_pred ecchHhhhhhccccccchh-hhhhhhh-hccceeEEeccccceeee--hhhhhcccceEeecccchhH-hhhhhHhhhcC
Confidence 3445678999999999998 7777765 379999999999999753 34778999999999999887 44455677889
Q ss_pred CCEEEccCCcCcCcCCcccCCCCCCCEEEccCCcccCC-cccccCCCCCCCEEEccCCcCcccC
Q 005038 318 LEGLYLNNNSLLGKIPRWLGNLTRLQYIIMPNNHLEGP-IPVEFCQLDSLQILDISDNNISGSL 380 (717)
Q Consensus 318 L~~L~L~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~-~~~~~~~l~~L~~L~l~~n~~~~~~ 380 (717)
+++|.+++|.+.+ -..++.+-+|..||+++|++... ....++++|.|+++.+.+|++.+..
T Consensus 354 IKtL~La~N~iE~--LSGL~KLYSLvnLDl~~N~Ie~ldeV~~IG~LPCLE~l~L~~NPl~~~v 415 (490)
T KOG1259|consen 354 IKTLKLAQNKIET--LSGLRKLYSLVNLDLSSNQIEELDEVNHIGNLPCLETLRLTGNPLAGSV 415 (490)
T ss_pred EeeeehhhhhHhh--hhhhHhhhhheeccccccchhhHHHhcccccccHHHHHhhcCCCccccc
Confidence 9999999998853 34577788999999999998743 2345788999999999999987544
No 30
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=99.04 E-value=3.3e-10 Score=119.60 Aligned_cols=84 Identities=37% Similarity=0.590 Sum_probs=42.0
Q ss_pred cceeeCCCCccCCCCcccccCCccCCeEeCCCcccCCCCCcCCCCCCCCCEEECCCCcCCccCchhhcCCCCCCEEeccC
Q 005038 539 LSGLDLSCNKLIGHIPPQIGNLTRIQTLNLSHNNLTGSIPSTFSNLKHVESLDLSNNKLNGKIPHQLVELKTLEVFSVAY 618 (717)
Q Consensus 539 L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~N~i~~~~p~~~~~l~~L~~L~l~~ 618 (717)
|+++.+++|.+. ..+..+..++++..+.+.+|++. ..+..++.+++++.|++++|.++...+ +..+.+++.|++++
T Consensus 211 L~~l~~~~N~~~-~~~~~~~~~~~l~~l~l~~n~~~-~~~~~~~~l~~l~~L~~s~n~i~~i~~--~~~~~~l~~L~~s~ 286 (394)
T COG4886 211 LEELDLSNNSII-ELLSSLSNLKNLSGLELSNNKLE-DLPESIGNLSNLETLDLSNNQISSISS--LGSLTNLRELDLSG 286 (394)
T ss_pred hhhhhhcCCcce-ecchhhhhcccccccccCCceee-eccchhccccccceecccccccccccc--ccccCccCEEeccC
Confidence 555555555322 23344455555555555555555 224445555555555555555552222 45555555555555
Q ss_pred CcCeecCC
Q 005038 619 NNLSGEIP 626 (717)
Q Consensus 619 N~l~~~~p 626 (717)
|.++...|
T Consensus 287 n~~~~~~~ 294 (394)
T COG4886 287 NSLSNALP 294 (394)
T ss_pred ccccccch
Confidence 55554433
No 31
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=99.03 E-value=2.8e-11 Score=118.40 Aligned_cols=211 Identities=23% Similarity=0.220 Sum_probs=124.9
Q ss_pred hCCCCCCEEEccCCcCcccCc-cCcCCCCCcCEEEccCCcCCccCC-ccccccCCCCcEEECCCCCCCccCCcc-ccCCC
Q 005038 167 ENNTKLETLFLVNDSLAGPFR-LPIHSHKRLRQLDVSNNNIRGHIP-VKIGDVLPSLYVFNNSMNALDGSIPSS-FGNMK 243 (717)
Q Consensus 167 ~~~~~L~~L~l~~n~~~~~~~-~~~~~~~~L~~L~ls~n~i~~~~~-~~~~~~l~~L~~L~l~~n~~~~~~~~~-l~~l~ 243 (717)
.++.+|+.+.|.++.+..... .....|++++.||||.|-+....+ ..+.+.+|+|+.|+++.|++....... -..++
T Consensus 118 sn~kkL~~IsLdn~~V~~~~~~~~~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~~~~~l~ 197 (505)
T KOG3207|consen 118 SNLKKLREISLDNYRVEDAGIEEYSKILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFISSNTTLLLS 197 (505)
T ss_pred hhHHhhhheeecCccccccchhhhhhhCCcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccCCccccchhhhh
Confidence 356778888888887764332 345678888888888887763222 345566788888888888775322111 12467
Q ss_pred CCCEEEccCCccccccchhhhhCCCCCCEEEccCcccCccCcccccCCCCCCeEECcCCcCcccCc-ccccCCCCCCEEE
Q 005038 244 FLQILDLSNNHLTGEIPEHLAVGCVNLQFLALSNNNLQGHLFSRNFNLTNLQWLQLEGNRFVGEIP-QSLSKCSSLEGLY 322 (717)
Q Consensus 244 ~L~~L~Ls~n~l~~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~-~~~~~l~~L~~L~ 322 (717)
+|+.|.++.|.++..--......+++|+.|++..|....+.......+..|++|||++|.+..... ...+.++.|+.|+
T Consensus 198 ~lK~L~l~~CGls~k~V~~~~~~fPsl~~L~L~~N~~~~~~~~~~~i~~~L~~LdLs~N~li~~~~~~~~~~l~~L~~Ln 277 (505)
T KOG3207|consen 198 HLKQLVLNSCGLSWKDVQWILLTFPSLEVLYLEANEIILIKATSTKILQTLQELDLSNNNLIDFDQGYKVGTLPGLNQLN 277 (505)
T ss_pred hhheEEeccCCCCHHHHHHHHHhCCcHHHhhhhcccccceecchhhhhhHHhhccccCCcccccccccccccccchhhhh
Confidence 788888888877744444444567888888888775433344444556777888888777663211 2355667777777
Q ss_pred ccCCcCcCc-CCcc-----cCCCCCCCEEEccCCcccCC-cccccCCCCCCCEEEccCCcCc
Q 005038 323 LNNNSLLGK-IPRW-----LGNLTRLQYIIMPNNHLEGP-IPVEFCQLDSLQILDISDNNIS 377 (717)
Q Consensus 323 L~~n~~~~~-~~~~-----~~~l~~L~~L~l~~n~~~~~-~~~~~~~l~~L~~L~l~~n~~~ 377 (717)
++.+.+... .|+. ...+++|++|++..|++.+. .-..+..+++|+.|.+..|.+.
T Consensus 278 ls~tgi~si~~~d~~s~~kt~~f~kL~~L~i~~N~I~~w~sl~~l~~l~nlk~l~~~~n~ln 339 (505)
T KOG3207|consen 278 LSSTGIASIAEPDVESLDKTHTFPKLEYLNISENNIRDWRSLNHLRTLENLKHLRITLNYLN 339 (505)
T ss_pred ccccCcchhcCCCccchhhhcccccceeeecccCccccccccchhhccchhhhhhccccccc
Confidence 777766532 1111 12345566666666655321 1122233444444444444443
No 32
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=99.01 E-value=3.3e-11 Score=114.68 Aligned_cols=137 Identities=18% Similarity=0.195 Sum_probs=73.6
Q ss_pred CCCCEEEccCCcCcCc----CCcccCCCCCCCEEEccCCcccCC----cccccCCCCCCCEEEccCCcCcccCCCccccc
Q 005038 316 SSLEGLYLNNNSLLGK----IPRWLGNLTRLQYIIMPNNHLEGP----IPVEFCQLDSLQILDISDNNISGSLPSCFHPL 387 (717)
Q Consensus 316 ~~L~~L~L~~n~~~~~----~~~~~~~l~~L~~L~l~~n~~~~~----~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~ 387 (717)
+.|+++...+|++... ....|...+.|+.+.+..|.|... ....+..+++|+.||+.+|.++....
T Consensus 157 ~~Lrv~i~~rNrlen~ga~~~A~~~~~~~~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft~egs------ 230 (382)
T KOG1909|consen 157 PKLRVFICGRNRLENGGATALAEAFQSHPTLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFTLEGS------ 230 (382)
T ss_pred cceEEEEeeccccccccHHHHHHHHHhccccceEEEecccccCchhHHHHHHHHhCCcceeeecccchhhhHHH------
Confidence 4555555555554321 112344445555555555554311 12234455555555555555432110
Q ss_pred cccEEeccCcccccccCccccCCCCcCCEEeCCCCcCCcccchhh-----hCCCCCcEEEcCCCccccc----cchhccC
Q 005038 388 SIKQVHLSKNMLHGQLKRGTFFNCSSLVTLDLSYNRLNGSIPDWV-----DGLSQLSHLILGHNNLEGE----VSVQLCE 458 (717)
Q Consensus 388 ~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~~-----~~l~~L~~L~L~~n~l~~~----~~~~l~~ 458 (717)
.....++..+++|+.|++++|.+......+| ...|+|++|.+.+|.++.. ....+..
T Consensus 231 --------------~~LakaL~s~~~L~El~l~dcll~~~Ga~a~~~al~~~~p~L~vl~l~gNeIt~da~~~la~~~~e 296 (382)
T KOG1909|consen 231 --------------VALAKALSSWPHLRELNLGDCLLENEGAIAFVDALKESAPSLEVLELAGNEITRDAALALAACMAE 296 (382)
T ss_pred --------------HHHHHHhcccchheeecccccccccccHHHHHHHHhccCCCCceeccCcchhHHHHHHHHHHHHhc
Confidence 1112235556777777777777765433322 2367788888888877632 2233455
Q ss_pred CCCCCEEEccCCcC
Q 005038 459 LNQLQLLDLSNNNL 472 (717)
Q Consensus 459 l~~L~~L~L~~n~l 472 (717)
.|.|..|+|++|.+
T Consensus 297 k~dL~kLnLngN~l 310 (382)
T KOG1909|consen 297 KPDLEKLNLNGNRL 310 (382)
T ss_pred chhhHHhcCCcccc
Confidence 77888888888877
No 33
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=99.01 E-value=5.7e-10 Score=117.81 Aligned_cols=102 Identities=33% Similarity=0.457 Sum_probs=53.7
Q ss_pred EEEccCcccCccCcccccCCCCCCeEECcCCcCcccCcccccCCC-CCCEEEccCCcCcCcCCcccCCCCCCCEEEccCC
Q 005038 272 FLALSNNNLQGHLFSRNFNLTNLQWLQLEGNRFVGEIPQSLSKCS-SLEGLYLNNNSLLGKIPRWLGNLTRLQYIIMPNN 350 (717)
Q Consensus 272 ~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~-~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~l~~n 350 (717)
.+++..+.+.. ....+..++.++.|++.+|.+. .++....... +|+.|++++|.+. .+|..+..+++|+.|++++|
T Consensus 97 ~l~~~~~~~~~-~~~~~~~~~~l~~L~l~~n~i~-~i~~~~~~~~~nL~~L~l~~N~i~-~l~~~~~~l~~L~~L~l~~N 173 (394)
T COG4886 97 SLDLNLNRLRS-NISELLELTNLTSLDLDNNNIT-DIPPLIGLLKSNLKELDLSDNKIE-SLPSPLRNLPNLKNLDLSFN 173 (394)
T ss_pred eeecccccccc-CchhhhcccceeEEecCCcccc-cCccccccchhhcccccccccchh-hhhhhhhccccccccccCCc
Confidence 45555555431 1222334456666666666666 3333344442 6666666666665 33344555666666666666
Q ss_pred cccCCcccccCCCCCCCEEEccCCcCc
Q 005038 351 HLEGPIPVEFCQLDSLQILDISDNNIS 377 (717)
Q Consensus 351 ~~~~~~~~~~~~l~~L~~L~l~~n~~~ 377 (717)
++.. ++......+.|+.|++++|++.
T Consensus 174 ~l~~-l~~~~~~~~~L~~L~ls~N~i~ 199 (394)
T COG4886 174 DLSD-LPKLLSNLSNLNNLDLSGNKIS 199 (394)
T ss_pred hhhh-hhhhhhhhhhhhheeccCCccc
Confidence 6653 3333334555666666666555
No 34
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=99.01 E-value=4.6e-11 Score=113.76 Aligned_cols=138 Identities=18% Similarity=0.197 Sum_probs=93.7
Q ss_pred ccCCCCCCEEEccCCccccccc---hhhhhCCCCCCEEEccCcccCcc----CcccccCCCCCCeEECcCCcCccc----
Q 005038 239 FGNMKFLQILDLSNNHLTGEIP---EHLAVGCVNLQFLALSNNNLQGH----LFSRNFNLTNLQWLQLEGNRFVGE---- 307 (717)
Q Consensus 239 l~~l~~L~~L~Ls~n~l~~~~~---~~~~~~~~~L~~L~L~~n~i~~~----~~~~~~~l~~L~~L~L~~n~l~~~---- 307 (717)
.+.-+.|+++...+|++..... ...++..+.|+.+.++.|.|... ...++..+++|+.|||.+|.++..
T Consensus 153 ~~~~~~Lrv~i~~rNrlen~ga~~~A~~~~~~~~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft~egs~~ 232 (382)
T KOG1909|consen 153 AASKPKLRVFICGRNRLENGGATALAEAFQSHPTLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFTLEGSVA 232 (382)
T ss_pred cCCCcceEEEEeeccccccccHHHHHHHHHhccccceEEEecccccCchhHHHHHHHHhCCcceeeecccchhhhHHHHH
Confidence 3455788999999988863222 22334567888999988887632 234566788899999998877643
Q ss_pred CcccccCCCCCCEEEccCCcCcCcCCccc-----CCCCCCCEEEccCCcccCC----cccccCCCCCCCEEEccCCcC
Q 005038 308 IPQSLSKCSSLEGLYLNNNSLLGKIPRWL-----GNLTRLQYIIMPNNHLEGP----IPVEFCQLDSLQILDISDNNI 376 (717)
Q Consensus 308 ~~~~~~~l~~L~~L~L~~n~~~~~~~~~~-----~~l~~L~~L~l~~n~~~~~----~~~~~~~l~~L~~L~l~~n~~ 376 (717)
+...+..+++|+.|++++|.+.......| ...++|+.+.+.+|.++.. +...+...+.|..|++++|.+
T Consensus 233 LakaL~s~~~L~El~l~dcll~~~Ga~a~~~al~~~~p~L~vl~l~gNeIt~da~~~la~~~~ek~dL~kLnLngN~l 310 (382)
T KOG1909|consen 233 LAKALSSWPHLRELNLGDCLLENEGAIAFVDALKESAPSLEVLELAGNEITRDAALALAACMAEKPDLEKLNLNGNRL 310 (382)
T ss_pred HHHHhcccchheeecccccccccccHHHHHHHHhccCCCCceeccCcchhHHHHHHHHHHHHhcchhhHHhcCCcccc
Confidence 23456677788888888888765544333 2367888888888877632 222344567788888888877
No 35
>PLN03150 hypothetical protein; Provisional
Probab=99.00 E-value=7.2e-10 Score=122.28 Aligned_cols=114 Identities=32% Similarity=0.522 Sum_probs=101.0
Q ss_pred CCCEEEccCCcCccCCCcccccccccccccCCCCCCcchhhhhhcccccccccccccceEEEeeccceeeeccccccccc
Q 005038 461 QLQLLDLSNNNLHGPIPPCFDNTTLHESYSNSSSPDEQFEIFFSIEGHQGFLEKQNHEIFEFTTKNIAYIYQGKVLSLLS 540 (717)
Q Consensus 461 ~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~ 540 (717)
.++.|+|++|.+.+.+|..+..+. .|+
T Consensus 419 ~v~~L~L~~n~L~g~ip~~i~~L~-----------------------------------------------------~L~ 445 (623)
T PLN03150 419 FIDGLGLDNQGLRGFIPNDISKLR-----------------------------------------------------HLQ 445 (623)
T ss_pred EEEEEECCCCCccccCCHHHhCCC-----------------------------------------------------CCC
Confidence 367889999999888887665543 799
Q ss_pred eeeCCCCccCCCCcccccCCccCCeEeCCCcccCCCCCcCCCCCCCCCEEECCCCcCCccCchhhcCC-CCCCEEeccCC
Q 005038 541 GLDLSCNKLIGHIPPQIGNLTRIQTLNLSHNNLTGSIPSTFSNLKHVESLDLSNNKLNGKIPHQLVEL-KTLEVFSVAYN 619 (717)
Q Consensus 541 ~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~N~i~~~~p~~~~~l-~~L~~L~l~~N 619 (717)
.|+|++|.+.+.+|..++.+++|+.|+|++|++++.+|+.++++++|+.|+|++|++++.+|..+... .++..+++.+|
T Consensus 446 ~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls~N~l~g~iP~~l~~~~~~~~~l~~~~N 525 (623)
T PLN03150 446 SINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLNGNSLSGRVPAALGGRLLHRASFNFTDN 525 (623)
T ss_pred EEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECcCCcccccCChHHhhccccCceEEecCC
Confidence 99999999999999999999999999999999999999999999999999999999999999988764 57789999999
Q ss_pred cCeecCCC
Q 005038 620 NLSGEIPE 627 (717)
Q Consensus 620 ~l~~~~p~ 627 (717)
+..|..|.
T Consensus 526 ~~lc~~p~ 533 (623)
T PLN03150 526 AGLCGIPG 533 (623)
T ss_pred ccccCCCC
Confidence 87765554
No 36
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=99.00 E-value=4.3e-10 Score=100.80 Aligned_cols=126 Identities=33% Similarity=0.370 Sum_probs=39.8
Q ss_pred CCCCcCEEEccCCcCCccCCccccccCCCCcEEECCCCCCCccCCccccCCCCCCEEEccCCccccccchhhhhCCCCCC
Q 005038 192 SHKRLRQLDVSNNNIRGHIPVKIGDVLPSLYVFNNSMNALDGSIPSSFGNMKFLQILDLSNNHLTGEIPEHLAVGCVNLQ 271 (717)
Q Consensus 192 ~~~~L~~L~ls~n~i~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~L~ 271 (717)
++.++++|+|++|.|+ .+ ..+...+.+|+.|++++|.+... +.+..++.|++|++++|+|+ .+.+.+...+++|+
T Consensus 17 n~~~~~~L~L~~n~I~-~I-e~L~~~l~~L~~L~Ls~N~I~~l--~~l~~L~~L~~L~L~~N~I~-~i~~~l~~~lp~L~ 91 (175)
T PF14580_consen 17 NPVKLRELNLRGNQIS-TI-ENLGATLDKLEVLDLSNNQITKL--EGLPGLPRLKTLDLSNNRIS-SISEGLDKNLPNLQ 91 (175)
T ss_dssp ---------------------S--TT-TT--EEE-TTS--S----TT----TT--EEE--SS----S-CHHHHHH-TT--
T ss_pred cccccccccccccccc-cc-cchhhhhcCCCEEECCCCCCccc--cCccChhhhhhcccCCCCCC-ccccchHHhCCcCC
Confidence 3445677777777775 33 23443456677777777777642 23667788888888888887 66555544577888
Q ss_pred EEEccCcccCccC-cccccCCCCCCeEECcCCcCcccCc---ccccCCCCCCEEE
Q 005038 272 FLALSNNNLQGHL-FSRNFNLTNLQWLQLEGNRFVGEIP---QSLSKCSSLEGLY 322 (717)
Q Consensus 272 ~L~L~~n~i~~~~-~~~~~~l~~L~~L~L~~n~l~~~~~---~~~~~l~~L~~L~ 322 (717)
+|++++|+|.... ...+..+++|++|+|.+|.+..... ..+..+|+|+.||
T Consensus 92 ~L~L~~N~I~~l~~l~~L~~l~~L~~L~L~~NPv~~~~~YR~~vi~~lP~Lk~LD 146 (175)
T PF14580_consen 92 ELYLSNNKISDLNELEPLSSLPKLRVLSLEGNPVCEKKNYRLFVIYKLPSLKVLD 146 (175)
T ss_dssp EEE-TTS---SCCCCGGGGG-TT--EEE-TT-GGGGSTTHHHHHHHH-TT-SEET
T ss_pred EEECcCCcCCChHHhHHHHcCCCcceeeccCCcccchhhHHHHHHHHcChhheeC
Confidence 8888888776421 1334456666666666666553210 1234455555554
No 37
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=98.91 E-value=1.7e-10 Score=121.78 Aligned_cols=246 Identities=29% Similarity=0.295 Sum_probs=140.1
Q ss_pred CCCCeEECcCCcCcccCcccccCCCCCCEEEccCCcCcCcCCcccCCCCCCCEEEccCCcccCCcccccCCCCCCCEEEc
Q 005038 292 TNLQWLQLEGNRFVGEIPQSLSKCSSLEGLYLNNNSLLGKIPRWLGNLTRLQYIIMPNNHLEGPIPVEFCQLDSLQILDI 371 (717)
Q Consensus 292 ~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l 371 (717)
..++.+++..|.+.. .-..+..+++|+.|++.+|.+.. +...+..+++|++|++++|.|+.. ..+..++.|+.|++
T Consensus 72 ~~l~~l~l~~n~i~~-~~~~l~~~~~l~~l~l~~n~i~~-i~~~l~~~~~L~~L~ls~N~I~~i--~~l~~l~~L~~L~l 147 (414)
T KOG0531|consen 72 TSLKELNLRQNLIAK-ILNHLSKLKSLEALDLYDNKIEK-IENLLSSLVNLQVLDLSFNKITKL--EGLSTLTLLKELNL 147 (414)
T ss_pred HhHHhhccchhhhhh-hhcccccccceeeeeccccchhh-cccchhhhhcchheeccccccccc--cchhhccchhhhee
Confidence 344444444444442 11224445555556665555542 222244556666666666666543 22344445666666
Q ss_pred cCCcCcccCCCccccccccEEeccCcccccccCccccCCCCcCCEEeCCCCcCCcccc-hhhhCCCCCcEEEcCCCcccc
Q 005038 372 SDNNISGSLPSCFHPLSIKQVHLSKNMLHGQLKRGTFFNCSSLVTLDLSYNRLNGSIP-DWVDGLSQLSHLILGHNNLEG 450 (717)
Q Consensus 372 ~~n~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~L~~n~~~~~~~-~~~~~l~~L~~L~L~~n~l~~ 450 (717)
++|.+... . .+..+..|+.+++++|++....+ . ...+.+++.+++.+|.+..
T Consensus 148 ~~N~i~~~------------------------~--~~~~l~~L~~l~l~~n~i~~ie~~~-~~~~~~l~~l~l~~n~i~~ 200 (414)
T KOG0531|consen 148 SGNLISDI------------------------S--GLESLKSLKLLDLSYNRIVDIENDE-LSELISLEELDLGGNSIRE 200 (414)
T ss_pred ccCcchhc------------------------c--CCccchhhhcccCCcchhhhhhhhh-hhhccchHHHhccCCchhc
Confidence 66655421 0 13345667777777777664433 1 3556677777777777663
Q ss_pred ccchhccCCCCCCEEEccCCcCccCCCcccccccccccccCCCCCCcchhhhhhcccccccccccccceEEEeeccceee
Q 005038 451 EVSVQLCELNQLQLLDLSNNNLHGPIPPCFDNTTLHESYSNSSSPDEQFEIFFSIEGHQGFLEKQNHEIFEFTTKNIAYI 530 (717)
Q Consensus 451 ~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 530 (717)
.. .+..+..+..+++..|.++..-+.
T Consensus 201 i~--~~~~~~~l~~~~l~~n~i~~~~~l---------------------------------------------------- 226 (414)
T KOG0531|consen 201 IE--GLDLLKKLVLLSLLDNKISKLEGL---------------------------------------------------- 226 (414)
T ss_pred cc--chHHHHHHHHhhcccccceeccCc----------------------------------------------------
Confidence 22 233334444446666665422110
Q ss_pred ecccccc--ccceeeCCCCccCCCCcccccCCccCCeEeCCCcccCCCCCcCCCCCCCCCEEECCCCcCCcc---Cchh-
Q 005038 531 YQGKVLS--LLSGLDLSCNKLIGHIPPQIGNLTRIQTLNLSHNNLTGSIPSTFSNLKHVESLDLSNNKLNGK---IPHQ- 604 (717)
Q Consensus 531 ~~~~~l~--~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~N~i~~~---~p~~- 604 (717)
..+. .|+.+++++|++.. .+..+..+..+..|++++|++... ..+...+.+..+....|++... ....
T Consensus 227 ---~~~~~~~L~~l~l~~n~i~~-~~~~~~~~~~l~~l~~~~n~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 300 (414)
T KOG0531|consen 227 ---NELVMLHLRELYLSGNRISR-SPEGLENLKNLPVLDLSSNRISNL--EGLERLPKLSELWLNDNKLALSEAISQEYI 300 (414)
T ss_pred ---ccchhHHHHHHhcccCcccc-ccccccccccccccchhhcccccc--ccccccchHHHhccCcchhcchhhhhcccc
Confidence 0011 27788888888773 335677788888888888888754 4456677778888888887622 1221
Q ss_pred hcCCCCCCEEeccCCcCeecCCCC
Q 005038 605 LVELKTLEVFSVAYNNLSGEIPEW 628 (717)
Q Consensus 605 ~~~l~~L~~L~l~~N~l~~~~p~~ 628 (717)
....+.++...+.+|+.....+.+
T Consensus 301 ~~~~~~~~~~~~~~~~~~~~~~~~ 324 (414)
T KOG0531|consen 301 TSAAPTLVTLTLELNPIRKISSLD 324 (414)
T ss_pred ccccccccccccccCccccccccc
Confidence 455677888888888887766543
No 38
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=98.87 E-value=1e-09 Score=80.67 Aligned_cols=59 Identities=41% Similarity=0.633 Sum_probs=32.3
Q ss_pred cCCeEeCCCcccCCCCCcCCCCCCCCCEEECCCCcCCccCchhhcCCCCCCEEeccCCc
Q 005038 562 RIQTLNLSHNNLTGSIPSTFSNLKHVESLDLSNNKLNGKIPHQLVELKTLEVFSVAYNN 620 (717)
Q Consensus 562 ~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~N~i~~~~p~~~~~l~~L~~L~l~~N~ 620 (717)
+|++|++++|+++.+.++.|.++++|++|++++|+++...|+.|..+++|++|++++|+
T Consensus 2 ~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~ 60 (61)
T PF13855_consen 2 NLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNN 60 (61)
T ss_dssp TESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSS
T ss_pred cCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCc
Confidence 45555555555554444555555555555555555554444555555555555555554
No 39
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=98.85 E-value=1.3e-09 Score=80.07 Aligned_cols=61 Identities=51% Similarity=0.663 Sum_probs=57.2
Q ss_pred cccceeeCCCCccCCCCcccccCCccCCeEeCCCcccCCCCCcCCCCCCCCCEEECCCCcC
Q 005038 537 SLLSGLDLSCNKLIGHIPPQIGNLTRIQTLNLSHNNLTGSIPSTFSNLKHVESLDLSNNKL 597 (717)
Q Consensus 537 ~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~N~i 597 (717)
++|++|++++|++....+..|.++++|++|++++|.++.+.|+.|.++++|++|++++|+|
T Consensus 1 p~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~l 61 (61)
T PF13855_consen 1 PNLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNNL 61 (61)
T ss_dssp TTESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSSB
T ss_pred CcCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCcC
Confidence 3689999999999988778999999999999999999988889999999999999999986
No 40
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=98.77 E-value=8.3e-10 Score=116.55 Aligned_cols=218 Identities=28% Similarity=0.305 Sum_probs=142.5
Q ss_pred CCCCCCEEEccCCcCcCcCCcccCCCCCCCEEEccCCcccCCcccccCCCCCCCEEEccCCcCcccCCCccccccccEEe
Q 005038 314 KCSSLEGLYLNNNSLLGKIPRWLGNLTRLQYIIMPNNHLEGPIPVEFCQLDSLQILDISDNNISGSLPSCFHPLSIKQVH 393 (717)
Q Consensus 314 ~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~L~~L~ 393 (717)
.+..++.+.+..|.+.. ....+..+++|+.+++.+|.+..+ ...+..+++|++|++++|.|+...
T Consensus 70 ~l~~l~~l~l~~n~i~~-~~~~l~~~~~l~~l~l~~n~i~~i-~~~l~~~~~L~~L~ls~N~I~~i~------------- 134 (414)
T KOG0531|consen 70 SLTSLKELNLRQNLIAK-ILNHLSKLKSLEALDLYDNKIEKI-ENLLSSLVNLQVLDLSFNKITKLE------------- 134 (414)
T ss_pred HhHhHHhhccchhhhhh-hhcccccccceeeeeccccchhhc-ccchhhhhcchheecccccccccc-------------
Confidence 44556666666666653 223355667777777777777643 222556667777777777665321
Q ss_pred ccCcccccccCccccCCCCcCCEEeCCCCcCCcccchhhhCCCCCcEEEcCCCccccccc-hhccCCCCCCEEEccCCcC
Q 005038 394 LSKNMLHGQLKRGTFFNCSSLVTLDLSYNRLNGSIPDWVDGLSQLSHLILGHNNLEGEVS-VQLCELNQLQLLDLSNNNL 472 (717)
Q Consensus 394 l~~n~~~~~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~-~~l~~l~~L~~L~L~~n~l 472 (717)
. +..++.|+.|++++|.++.. ..+..++.|+.+++++|++....+ . ...+.+++.+++.+|.+
T Consensus 135 ----------~---l~~l~~L~~L~l~~N~i~~~--~~~~~l~~L~~l~l~~n~i~~ie~~~-~~~~~~l~~l~l~~n~i 198 (414)
T KOG0531|consen 135 ----------G---LSTLTLLKELNLSGNLISDI--SGLESLKSLKLLDLSYNRIVDIENDE-LSELISLEELDLGGNSI 198 (414)
T ss_pred ----------c---hhhccchhhheeccCcchhc--cCCccchhhhcccCCcchhhhhhhhh-hhhccchHHHhccCCch
Confidence 1 44556688899999988743 335567888899999998885554 2 56778888888888877
Q ss_pred ccCCCcccccccccccccCCCCCCcchhhhhhcccccccccccccceEEEeeccceeeeccccccccceeeCCCCccCCC
Q 005038 473 HGPIPPCFDNTTLHESYSNSSSPDEQFEIFFSIEGHQGFLEKQNHEIFEFTTKNIAYIYQGKVLSLLSGLDLSCNKLIGH 552 (717)
Q Consensus 473 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~ 552 (717)
...... .....+..+++..|.++..
T Consensus 199 ~~i~~~-------------------------------------------------------~~~~~l~~~~l~~n~i~~~ 223 (414)
T KOG0531|consen 199 REIEGL-------------------------------------------------------DLLKKLVLLSLLDNKISKL 223 (414)
T ss_pred hcccch-------------------------------------------------------HHHHHHHHhhcccccceec
Confidence 532211 0112344557778877643
Q ss_pred CcccccCCc--cCCeEeCCCcccCCCCCcCCCCCCCCCEEECCCCcCCccCchhhcCCCCCCEEeccCCcCe
Q 005038 553 IPPQIGNLT--RIQTLNLSHNNLTGSIPSTFSNLKHVESLDLSNNKLNGKIPHQLVELKTLEVFSVAYNNLS 622 (717)
Q Consensus 553 ~~~~l~~l~--~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~N~i~~~~p~~~~~l~~L~~L~l~~N~l~ 622 (717)
.+ +..+. .|+++++++|++. ..+..+..+..+..|++.+|++... ..+.....+..+....|.+.
T Consensus 224 ~~--l~~~~~~~L~~l~l~~n~i~-~~~~~~~~~~~l~~l~~~~n~~~~~--~~~~~~~~~~~~~~~~~~~~ 290 (414)
T KOG0531|consen 224 EG--LNELVMLHLRELYLSGNRIS-RSPEGLENLKNLPVLDLSSNRISNL--EGLERLPKLSELWLNDNKLA 290 (414)
T ss_pred cC--cccchhHHHHHHhcccCccc-cccccccccccccccchhhcccccc--ccccccchHHHhccCcchhc
Confidence 22 22333 3899999999998 5546778888999999999998743 23455666777777777766
No 41
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=98.76 E-value=6.7e-09 Score=117.04 Aligned_cols=59 Identities=27% Similarity=0.399 Sum_probs=36.3
Q ss_pred cccccceeeCCCCccCCCCcccccCCccCCeEeCCCcccCCC-CCcCCCCCCCCCEEECC
Q 005038 535 VLSLLSGLDLSCNKLIGHIPPQIGNLTRIQTLNLSHNNLTGS-IPSTFSNLKHVESLDLS 593 (717)
Q Consensus 535 ~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~-~p~~~~~l~~L~~L~L~ 593 (717)
+.++|+.|.+.++...+.+.+....+..++++.+..+.+.+. .-...++++++..+.++
T Consensus 768 f~~~L~~l~l~~~~~~e~~i~~~k~~~~l~~~i~~f~~~~~l~~~~~l~~l~~i~~~~l~ 827 (889)
T KOG4658|consen 768 FAPHLTSLSLVSCRLLEDIIPKLKALLELKELILPFNKLEGLRMLCSLGGLPQLYWLPLS 827 (889)
T ss_pred ccCcccEEEEecccccccCCCHHHHhhhcccEEecccccccceeeecCCCCceeEecccC
Confidence 456788888888887766666666666677666666666644 22334444444444433
No 42
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=98.76 E-value=8.4e-09 Score=116.24 Aligned_cols=288 Identities=24% Similarity=0.262 Sum_probs=163.4
Q ss_pred CCCCEEEccCCcCcccCccCcCCCCCcCEEEccCCc--CCccCCccccccCCCCcEEECCCCCCCccCCccccCCCCCCE
Q 005038 170 TKLETLFLVNDSLAGPFRLPIHSHKRLRQLDVSNNN--IRGHIPVKIGDVLPSLYVFNNSMNALDGSIPSSFGNMKFLQI 247 (717)
Q Consensus 170 ~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~ls~n~--i~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~ 247 (717)
...+...+-+|.+..... -..+++|++|-+.+|. +. .++..++..++.|++|++++|.-.+.+|..++.+-+|++
T Consensus 523 ~~~rr~s~~~~~~~~~~~--~~~~~~L~tLll~~n~~~l~-~is~~ff~~m~~LrVLDLs~~~~l~~LP~~I~~Li~Lry 599 (889)
T KOG4658|consen 523 NSVRRMSLMNNKIEHIAG--SSENPKLRTLLLQRNSDWLL-EISGEFFRSLPLLRVLDLSGNSSLSKLPSSIGELVHLRY 599 (889)
T ss_pred hheeEEEEeccchhhccC--CCCCCccceEEEeecchhhh-hcCHHHHhhCcceEEEECCCCCccCcCChHHhhhhhhhc
Confidence 455666666665543221 1233467777777775 43 666666777888888888887776788888888888888
Q ss_pred EEccCCccccccchhhhhCCCCCCEEEccCcccCccCcccccCCCCCCeEECcCCcCc--ccCcccccCCCCCCEEEccC
Q 005038 248 LDLSNNHLTGEIPEHLAVGCVNLQFLALSNNNLQGHLFSRNFNLTNLQWLQLEGNRFV--GEIPQSLSKCSSLEGLYLNN 325 (717)
Q Consensus 248 L~Ls~n~l~~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~--~~~~~~~~~l~~L~~L~L~~ 325 (717)
|++++..+. .+|..+.. +..|.+|++..+.-....+.....+++|++|.+...... ...-..+..+.+|+.+....
T Consensus 600 L~L~~t~I~-~LP~~l~~-Lk~L~~Lnl~~~~~l~~~~~i~~~L~~Lr~L~l~~s~~~~~~~~l~el~~Le~L~~ls~~~ 677 (889)
T KOG4658|consen 600 LDLSDTGIS-HLPSGLGN-LKKLIYLNLEVTGRLESIPGILLELQSLRVLRLPRSALSNDKLLLKELENLEHLENLSITI 677 (889)
T ss_pred ccccCCCcc-ccchHHHH-HHhhheeccccccccccccchhhhcccccEEEeeccccccchhhHHhhhcccchhhheeec
Confidence 888888887 88888764 788888888877655555566666888888888665421 11112334445555555433
Q ss_pred CcCcCcCCcccCCCCCCC----EEEccCCcccCCcccccCCCCCCCEEEccCCcCcccCCCccc-------cccccEEec
Q 005038 326 NSLLGKIPRWLGNLTRLQ----YIIMPNNHLEGPIPVEFCQLDSLQILDISDNNISGSLPSCFH-------PLSIKQVHL 394 (717)
Q Consensus 326 n~~~~~~~~~~~~l~~L~----~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~-------~~~L~~L~l 394 (717)
... .+-..+..++.|. .+.+.++... ..+..+..+.+|+.|.+.++.+......+.. ++++..+..
T Consensus 678 ~s~--~~~e~l~~~~~L~~~~~~l~~~~~~~~-~~~~~~~~l~~L~~L~i~~~~~~e~~~~~~~~~~~~~~f~~l~~~~~ 754 (889)
T KOG4658|consen 678 SSV--LLLEDLLGMTRLRSLLQSLSIEGCSKR-TLISSLGSLGNLEELSILDCGISEIVIEWEESLIVLLCFPNLSKVSI 754 (889)
T ss_pred chh--HhHhhhhhhHHHHHHhHhhhhcccccc-eeecccccccCcceEEEEcCCCchhhcccccccchhhhHHHHHHHHh
Confidence 322 1111122222322 2232222222 3445567788888888888877543332211 223333334
Q ss_pred cCcccccccCccccCCCCcCCEEeCCCCcCCcccchhhhCCCCCcEEEcCCCccccc-cchhccCCCCCCEEEc
Q 005038 395 SKNMLHGQLKRGTFFNCSSLVTLDLSYNRLNGSIPDWVDGLSQLSHLILGHNNLEGE-VSVQLCELNQLQLLDL 467 (717)
Q Consensus 395 ~~n~~~~~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~-~~~~l~~l~~L~~L~L 467 (717)
.++......... .-.++|+.|.+..+...+.+......+..+..+.+..+.+.+. ......+++++..+.+
T Consensus 755 ~~~~~~r~l~~~--~f~~~L~~l~l~~~~~~e~~i~~~k~~~~l~~~i~~f~~~~~l~~~~~l~~l~~i~~~~l 826 (889)
T KOG4658|consen 755 LNCHMLRDLTWL--LFAPHLTSLSLVSCRLLEDIIPKLKALLELKELILPFNKLEGLRMLCSLGGLPQLYWLPL 826 (889)
T ss_pred hccccccccchh--hccCcccEEEEecccccccCCCHHHHhhhcccEEecccccccceeeecCCCCceeEeccc
Confidence 444332222211 1236777777777765555544555555565555555555544 2333444444444433
No 43
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=98.61 E-value=7.2e-10 Score=103.11 Aligned_cols=86 Identities=22% Similarity=0.152 Sum_probs=50.4
Q ss_pred CCCEEEccCCCCcccCChhhhhCCCCCCEEEccCCcCcccCccCcCCCCCcCEEEccCC-cCCccCCccccccCCCCcEE
Q 005038 146 DLEYVDLSHIKMNGEFPNWLLENNTKLETLFLVNDSLAGPFRLPIHSHKRLRQLDVSNN-NIRGHIPVKIGDVLPSLYVF 224 (717)
Q Consensus 146 ~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~ls~n-~i~~~~~~~~~~~l~~L~~L 224 (717)
.|+++||+...++..--..++..|++|+.|.+.++.+.+.+...+.+-.+|+.|+++.+ .++......+...++.|..|
T Consensus 186 Rlq~lDLS~s~it~stl~~iLs~C~kLk~lSlEg~~LdD~I~~~iAkN~~L~~lnlsm~sG~t~n~~~ll~~scs~L~~L 265 (419)
T KOG2120|consen 186 RLQHLDLSNSVITVSTLHGILSQCSKLKNLSLEGLRLDDPIVNTIAKNSNLVRLNLSMCSGFTENALQLLLSSCSRLDEL 265 (419)
T ss_pred hhHHhhcchhheeHHHHHHHHHHHHhhhhccccccccCcHHHHHHhccccceeeccccccccchhHHHHHHHhhhhHhhc
Confidence 47777777766664444445566777777777777777666666666677777777664 34322222333334455555
Q ss_pred ECCCCCC
Q 005038 225 NNSMNAL 231 (717)
Q Consensus 225 ~l~~n~~ 231 (717)
+++.|..
T Consensus 266 NlsWc~l 272 (419)
T KOG2120|consen 266 NLSWCFL 272 (419)
T ss_pred CchHhhc
Confidence 5555443
No 44
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=98.51 E-value=3.3e-09 Score=98.76 Aligned_cols=221 Identities=22% Similarity=0.184 Sum_probs=144.4
Q ss_pred CEEEccCCCCcccCChhhhhC--CCCCCEEEccCCcCccc-CccCcCCC-CCcCEEEccCCcCCccCCccccccCCCCcE
Q 005038 148 EYVDLSHIKMNGEFPNWLLEN--NTKLETLFLVNDSLAGP-FRLPIHSH-KRLRQLDVSNNNIRGHIPVKIGDVLPSLYV 223 (717)
Q Consensus 148 ~~L~l~~~~~~~~~~~~~~~~--~~~L~~L~l~~n~~~~~-~~~~~~~~-~~L~~L~ls~n~i~~~~~~~~~~~l~~L~~ 223 (717)
+.+|+.+-.+. |..+ +. -..+..+.+....+... +.+.+.-+ .+|+++|||...|+..--..+.+.+++|+.
T Consensus 139 ~~lDl~~r~i~---p~~l-~~l~~rgV~v~Rlar~~~~~prlae~~~~frsRlq~lDLS~s~it~stl~~iLs~C~kLk~ 214 (419)
T KOG2120|consen 139 QTLDLTGRNIH---PDVL-GRLLSRGVIVFRLARSFMDQPRLAEHFSPFRSRLQHLDLSNSVITVSTLHGILSQCSKLKN 214 (419)
T ss_pred eeeccCCCccC---hhHH-HHHHhCCeEEEEcchhhhcCchhhhhhhhhhhhhHHhhcchhheeHHHHHHHHHHHHhhhh
Confidence 45666665544 2222 11 23466666665544433 22222222 368999999988875555556667889999
Q ss_pred EECCCCCCCccCCccccCCCCCCEEEccCC-ccccccchhhhhCCCCCCEEEccCcccCccCcccc-c-CCCCCCeEECc
Q 005038 224 FNNSMNALDGSIPSSFGNMKFLQILDLSNN-HLTGEIPEHLAVGCVNLQFLALSNNNLQGHLFSRN-F-NLTNLQWLQLE 300 (717)
Q Consensus 224 L~l~~n~~~~~~~~~l~~l~~L~~L~Ls~n-~l~~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~-~-~l~~L~~L~L~ 300 (717)
+.+.++++.+.+...+++...|+.|+++.+ .++..-...++..|+.|.+|++++|.+........ . --++|+.|+|+
T Consensus 215 lSlEg~~LdD~I~~~iAkN~~L~~lnlsm~sG~t~n~~~ll~~scs~L~~LNlsWc~l~~~~Vtv~V~hise~l~~LNls 294 (419)
T KOG2120|consen 215 LSLEGLRLDDPIVNTIAKNSNLVRLNLSMCSGFTENALQLLLSSCSRLDELNLSWCFLFTEKVTVAVAHISETLTQLNLS 294 (419)
T ss_pred ccccccccCcHHHHHHhccccceeeccccccccchhHHHHHHHhhhhHhhcCchHhhccchhhhHHHhhhchhhhhhhhh
Confidence 999999998888888899999999999876 46644455667789999999999997764322111 1 23678888888
Q ss_pred CCcCc---ccCcccccCCCCCCEEEccCCc-CcCcCCcccCCCCCCCEEEccCCcccCCcccc---cCCCCCCCEEEccC
Q 005038 301 GNRFV---GEIPQSLSKCSSLEGLYLNNNS-LLGKIPRWLGNLTRLQYIIMPNNHLEGPIPVE---FCQLDSLQILDISD 373 (717)
Q Consensus 301 ~n~l~---~~~~~~~~~l~~L~~L~L~~n~-~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~---~~~l~~L~~L~l~~ 373 (717)
++.-. ..+..-...+++|.+|||++|. ++......|.+++.|++|.++.|.. ++|.. +...|.|.+|++.+
T Consensus 295 G~rrnl~~sh~~tL~~rcp~l~~LDLSD~v~l~~~~~~~~~kf~~L~~lSlsRCY~--i~p~~~~~l~s~psl~yLdv~g 372 (419)
T KOG2120|consen 295 GYRRNLQKSHLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFKFNYLQHLSLSRCYD--IIPETLLELNSKPSLVYLDVFG 372 (419)
T ss_pred hhHhhhhhhHHHHHHHhCCceeeeccccccccCchHHHHHHhcchheeeehhhhcC--CChHHeeeeccCcceEEEEecc
Confidence 86421 1122223578888889988874 3333334556778888888887753 34443 45677788888766
Q ss_pred C
Q 005038 374 N 374 (717)
Q Consensus 374 n 374 (717)
+
T Consensus 373 ~ 373 (419)
T KOG2120|consen 373 C 373 (419)
T ss_pred c
Confidence 5
No 45
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=98.50 E-value=3.2e-09 Score=110.41 Aligned_cols=124 Identities=27% Similarity=0.359 Sum_probs=93.4
Q ss_pred EEEeeccceeeec-cccccccceeeCCCCccCCCCcccccCCccCCeEeCCCcccCCCCCc-CCCCCCCCCEEECCCCcC
Q 005038 520 FEFTTKNIAYIYQ-GKVLSLLSGLDLSCNKLIGHIPPQIGNLTRIQTLNLSHNNLTGSIPS-TFSNLKHVESLDLSNNKL 597 (717)
Q Consensus 520 ~~~~~~~~~~~~~-~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~-~~~~l~~L~~L~L~~N~i 597 (717)
.+++.+.+..+.. ...++.++.|||++|+++... .+..++.|++|||++|.++ .+|. ...++. |+.|.+++|.+
T Consensus 169 a~fsyN~L~~mD~SLqll~ale~LnLshNk~~~v~--~Lr~l~~LkhLDlsyN~L~-~vp~l~~~gc~-L~~L~lrnN~l 244 (1096)
T KOG1859|consen 169 ASFSYNRLVLMDESLQLLPALESLNLSHNKFTKVD--NLRRLPKLKHLDLSYNCLR-HVPQLSMVGCK-LQLLNLRNNAL 244 (1096)
T ss_pred hhcchhhHHhHHHHHHHHHHhhhhccchhhhhhhH--HHHhcccccccccccchhc-cccccchhhhh-heeeeecccHH
Confidence 3444444444433 245778999999999998553 7899999999999999999 5553 344555 99999999999
Q ss_pred CccCchhhcCCCCCCEEeccCCcCeecCC-CCCcccCCCCcccccCCcCCCCC
Q 005038 598 NGKIPHQLVELKTLEVFSVAYNNLSGEIP-EWKAQFATFNESSYEGNTFLCGL 649 (717)
Q Consensus 598 ~~~~p~~~~~l~~L~~L~l~~N~l~~~~p-~~~~~~~~l~~~~~~~n~~~c~~ 649 (717)
+.. .++.++.+|+.||+++|-+.+.-. ..+..+..+..+.++|||..|..
T Consensus 245 ~tL--~gie~LksL~~LDlsyNll~~hseL~pLwsLs~L~~L~LeGNPl~c~p 295 (1096)
T KOG1859|consen 245 TTL--RGIENLKSLYGLDLSYNLLSEHSELEPLWSLSSLIVLWLEGNPLCCAP 295 (1096)
T ss_pred Hhh--hhHHhhhhhhccchhHhhhhcchhhhHHHHHHHHHHHhhcCCccccCH
Confidence 743 467899999999999998875311 12235667788999999988864
No 46
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.41 E-value=5.8e-08 Score=90.67 Aligned_cols=82 Identities=21% Similarity=0.229 Sum_probs=38.2
Q ss_pred CcCEEEccCCcCCccCCccccccCCCCcEEECCCCCCCc-cCCccccCCCCCCEEEccCCccccccchh-----hhhCCC
Q 005038 195 RLRQLDVSNNNIRGHIPVKIGDVLPSLYVFNNSMNALDG-SIPSSFGNMKFLQILDLSNNHLTGEIPEH-----LAVGCV 268 (717)
Q Consensus 195 ~L~~L~ls~n~i~~~~~~~~~~~l~~L~~L~l~~n~~~~-~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~-----~~~~~~ 268 (717)
++..+-+..|.+...-...-+..+|.+.-|+++.+++.. ..-+++..+++|..|.++++.+.+.+... +...++
T Consensus 200 nv~sv~v~e~PlK~~s~ek~se~~p~~~~LnL~~~~idswasvD~Ln~f~~l~dlRv~~~Pl~d~l~~~err~llIaRL~ 279 (418)
T KOG2982|consen 200 NVNSVFVCEGPLKTESSEKGSEPFPSLSCLNLGANNIDSWASVDALNGFPQLVDLRVSENPLSDPLRGGERRFLLIARLT 279 (418)
T ss_pred cchheeeecCcccchhhcccCCCCCcchhhhhcccccccHHHHHHHcCCchhheeeccCCcccccccCCcceEEEEeecc
Confidence 333344444433322222333334444455555555542 11234556666777777776665333221 112356
Q ss_pred CCCEEEcc
Q 005038 269 NLQFLALS 276 (717)
Q Consensus 269 ~L~~L~L~ 276 (717)
+++.|+=+
T Consensus 280 ~v~vLNGs 287 (418)
T KOG2982|consen 280 KVQVLNGS 287 (418)
T ss_pred ceEEecCc
Confidence 66666544
No 47
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.31 E-value=1.7e-07 Score=87.64 Aligned_cols=207 Identities=19% Similarity=0.129 Sum_probs=112.2
Q ss_pred CCCCEEEccCCccccccc-hhhhhCCCCCCEEEccCcccCc--cCcccccCCCCCCeEECcCCcCcccCcccccCCCCCC
Q 005038 243 KFLQILDLSNNHLTGEIP-EHLAVGCVNLQFLALSNNNLQG--HLFSRNFNLTNLQWLQLEGNRFVGEIPQSLSKCSSLE 319 (717)
Q Consensus 243 ~~L~~L~Ls~n~l~~~~~-~~~~~~~~~L~~L~L~~n~i~~--~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~ 319 (717)
..++.+.+.++.|..... ..+...++.++++||.+|.|+. .+...+.++|.|+.|+|+.|.+...+...-....+|+
T Consensus 45 ra~ellvln~~~id~~gd~~~~~~~~~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~I~~lp~p~~nl~ 124 (418)
T KOG2982|consen 45 RALELLVLNGSIIDNEGDVMLFGSSVTDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSDIKSLPLPLKNLR 124 (418)
T ss_pred cchhhheecCCCCCcchhHHHHHHHhhhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCccccCcccccceE
Confidence 345566666666642222 2334457788888888888863 2233445788899999998887754332113567888
Q ss_pred EEEccCCcCcC-cCCcccCCCCCCCEEEccCCcccCCcc--cccCC-CCCCCEEEccCCcCcccCC--C-ccccccccEE
Q 005038 320 GLYLNNNSLLG-KIPRWLGNLTRLQYIIMPNNHLEGPIP--VEFCQ-LDSLQILDISDNNISGSLP--S-CFHPLSIKQV 392 (717)
Q Consensus 320 ~L~L~~n~~~~-~~~~~~~~l~~L~~L~l~~n~~~~~~~--~~~~~-l~~L~~L~l~~n~~~~~~~--~-~~~~~~L~~L 392 (717)
+|-|.+..+.= .....+..+|.++.|.++.|....... +.... -+.++++++..|....... . .-.++++..+
T Consensus 125 ~lVLNgT~L~w~~~~s~l~~lP~vtelHmS~N~~rq~n~Dd~c~e~~s~~v~tlh~~~c~~~~w~~~~~l~r~Fpnv~sv 204 (418)
T KOG2982|consen 125 VLVLNGTGLSWTQSTSSLDDLPKVTELHMSDNSLRQLNLDDNCIEDWSTEVLTLHQLPCLEQLWLNKNKLSRIFPNVNSV 204 (418)
T ss_pred EEEEcCCCCChhhhhhhhhcchhhhhhhhccchhhhhccccccccccchhhhhhhcCCcHHHHHHHHHhHHhhcccchhe
Confidence 88888775531 222344567777888887774432211 11111 1244445444443210000 0 0013455566
Q ss_pred eccCcccccccCccccCCCCcCCEEeCCCCcCCcc-cchhhhCCCCCcEEEcCCCccc
Q 005038 393 HLSKNMLHGQLKRGTFFNCSSLVTLDLSYNRLNGS-IPDWVDGLSQLSHLILGHNNLE 449 (717)
Q Consensus 393 ~l~~n~~~~~~~~~~~~~~~~L~~L~L~~n~~~~~-~~~~~~~l~~L~~L~L~~n~l~ 449 (717)
.+..|.+...-....+...+.+..|+|+.++|.+- --+.+.++++|+.|.++++.+.
T Consensus 205 ~v~e~PlK~~s~ek~se~~p~~~~LnL~~~~idswasvD~Ln~f~~l~dlRv~~~Pl~ 262 (418)
T KOG2982|consen 205 FVCEGPLKTESSEKGSEPFPSLSCLNLGANNIDSWASVDALNGFPQLVDLRVSENPLS 262 (418)
T ss_pred eeecCcccchhhcccCCCCCcchhhhhcccccccHHHHHHHcCCchhheeeccCCccc
Confidence 66666554444444455556666666666665421 1124555666666666666554
No 48
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=98.25 E-value=5.4e-08 Score=80.12 Aligned_cols=89 Identities=20% Similarity=0.311 Sum_probs=53.1
Q ss_pred ccceeeCCCCccCCCCcccccCCccCCeEeCCCcccCCCCCcCCCCCCCCCEEECCCCcCCccCchhhcCCCCCCEEecc
Q 005038 538 LLSGLDLSCNKLIGHIPPQIGNLTRIQTLNLSHNNLTGSIPSTFSNLKHVESLDLSNNKLNGKIPHQLVELKTLEVFSVA 617 (717)
Q Consensus 538 ~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~N~i~~~~p~~~~~l~~L~~L~l~ 617 (717)
.++.|+|++|++. .+|..+..++.|+.|+++.|.+. ..|+.+..+.++-.|+..+|.+. .+|-.+..-+..-..++.
T Consensus 78 t~t~lNl~~neis-dvPeE~Aam~aLr~lNl~~N~l~-~~p~vi~~L~~l~~Lds~~na~~-eid~dl~~s~~~al~~lg 154 (177)
T KOG4579|consen 78 TATTLNLANNEIS-DVPEELAAMPALRSLNLRFNPLN-AEPRVIAPLIKLDMLDSPENARA-EIDVDLFYSSLPALIKLG 154 (177)
T ss_pred hhhhhhcchhhhh-hchHHHhhhHHhhhcccccCccc-cchHHHHHHHhHHHhcCCCCccc-cCcHHHhccccHHHHHhc
Confidence 4566666666666 45555777777777777777776 55666666777777777777665 444333333333334445
Q ss_pred CCcCeecCCCCC
Q 005038 618 YNNLSGEIPEWK 629 (717)
Q Consensus 618 ~N~l~~~~p~~~ 629 (717)
++++.+..|..+
T Consensus 155 nepl~~~~~~kl 166 (177)
T KOG4579|consen 155 NEPLGDETKKKL 166 (177)
T ss_pred CCcccccCcccc
Confidence 556665555543
No 49
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=98.22 E-value=3.3e-08 Score=103.08 Aligned_cols=123 Identities=28% Similarity=0.247 Sum_probs=65.1
Q ss_pred CCEEEccCcccCccCcccccCCCCCCeEECcCCcCcccCcccccCCCCCCEEEccCCcCcCcCCc-ccCCCCCCCEEEcc
Q 005038 270 LQFLALSNNNLQGHLFSRNFNLTNLQWLQLEGNRFVGEIPQSLSKCSSLEGLYLNNNSLLGKIPR-WLGNLTRLQYIIMP 348 (717)
Q Consensus 270 L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~-~~~~l~~L~~L~l~ 348 (717)
|...+.++|.+. ....++.-++.|+.|+|++|+++.. +.+..++.|++|||++|.+. .+|. ...++. |+.|.++
T Consensus 166 L~~a~fsyN~L~-~mD~SLqll~ale~LnLshNk~~~v--~~Lr~l~~LkhLDlsyN~L~-~vp~l~~~gc~-L~~L~lr 240 (1096)
T KOG1859|consen 166 LATASFSYNRLV-LMDESLQLLPALESLNLSHNKFTKV--DNLRRLPKLKHLDLSYNCLR-HVPQLSMVGCK-LQLLNLR 240 (1096)
T ss_pred HhhhhcchhhHH-hHHHHHHHHHHhhhhccchhhhhhh--HHHHhcccccccccccchhc-cccccchhhhh-heeeeec
Confidence 444555555554 2233444456666666666666533 25566666666666666665 2332 222333 6666666
Q ss_pred CCcccCCcccccCCCCCCCEEEccCCcCcccC--CCccccccccEEeccCccc
Q 005038 349 NNHLEGPIPVEFCQLDSLQILDISDNNISGSL--PSCFHPLSIKQVHLSKNML 399 (717)
Q Consensus 349 ~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~--~~~~~~~~L~~L~l~~n~~ 399 (717)
+|.++.. ..+.++.+|+.||+++|-+.+.. ...+.+..|+.|+|.+|.+
T Consensus 241 nN~l~tL--~gie~LksL~~LDlsyNll~~hseL~pLwsLs~L~~L~LeGNPl 291 (1096)
T KOG1859|consen 241 NNALTTL--RGIENLKSLYGLDLSYNLLSEHSELEPLWSLSSLIVLWLEGNPL 291 (1096)
T ss_pred ccHHHhh--hhHHhhhhhhccchhHhhhhcchhhhHHHHHHHHHHHhhcCCcc
Confidence 6666532 33455666666666666554321 1222344566666666654
No 50
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=98.13 E-value=2.7e-06 Score=56.81 Aligned_cols=40 Identities=33% Similarity=0.561 Sum_probs=27.1
Q ss_pred CCCCeeeCCCCCCCCCcchhccCCCCCCEEeCCCCCCcccCC
Q 005038 19 VHLQELYIASNDLRGSLPWCMANMTSLRILDVSSNQLTGSIS 60 (717)
Q Consensus 19 ~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~i~ 60 (717)
++|++|++++|+|+ .+|..+++|++|++|++++|.++ .++
T Consensus 1 ~~L~~L~l~~N~i~-~l~~~l~~l~~L~~L~l~~N~i~-~i~ 40 (44)
T PF12799_consen 1 KNLEELDLSNNQIT-DLPPELSNLPNLETLNLSNNPIS-DIS 40 (44)
T ss_dssp TT-SEEEETSSS-S-SHGGHGTTCTTSSEEEETSSCCS-BEG
T ss_pred CcceEEEccCCCCc-ccCchHhCCCCCCEEEecCCCCC-CCc
Confidence 46777778877777 45556777777777777777776 444
No 51
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=98.12 E-value=4.5e-07 Score=83.73 Aligned_cols=21 Identities=19% Similarity=0.086 Sum_probs=13.1
Q ss_pred cCCCCCCEEEccCCccccccc
Q 005038 90 FNYSRLKIFNAENNEIKAEIT 110 (717)
Q Consensus 90 ~~l~~L~~L~l~~n~l~~~~~ 110 (717)
..+..++.+++|+|.+.....
T Consensus 27 ~~~d~~~evdLSGNtigtEA~ 47 (388)
T COG5238 27 EMMDELVEVDLSGNTIGTEAM 47 (388)
T ss_pred HhhcceeEEeccCCcccHHHH
Confidence 345667777777776665443
No 52
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=98.07 E-value=5.7e-06 Score=73.40 Aligned_cols=110 Identities=22% Similarity=0.307 Sum_probs=59.2
Q ss_pred CCeeeCCCCCCCCCcchhccCCCCCCEEeCCCCCCcccCCccccCCCCCCCEEECCCCcccCcCCcccccCCCCCCEEEc
Q 005038 21 LQELYIASNDLRGSLPWCMANMTSLRILDVSSNQLTGSISSSPLVHLTSIEELMLSNNYFQIPISLEPLFNYSRLKIFNA 100 (717)
Q Consensus 21 L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~i~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~l 100 (717)
...+||++|++... ..|.++++|.+|.|++|+|+ .|.+..-..+++|+.|.|.+|.+..-.....+..+++|++|.+
T Consensus 44 ~d~iDLtdNdl~~l--~~lp~l~rL~tLll~nNrIt-~I~p~L~~~~p~l~~L~LtnNsi~~l~dl~pLa~~p~L~~Ltl 120 (233)
T KOG1644|consen 44 FDAIDLTDNDLRKL--DNLPHLPRLHTLLLNNNRIT-RIDPDLDTFLPNLKTLILTNNSIQELGDLDPLASCPKLEYLTL 120 (233)
T ss_pred cceecccccchhhc--ccCCCccccceEEecCCcce-eeccchhhhccccceEEecCcchhhhhhcchhccCCccceeee
Confidence 33455665555422 23445556666666666665 4444233344556666666665553333334555555555555
Q ss_pred cCCcccccccccccccCCCccccEEEccCCCCCCCCCchhhcCCCCCCEEEccCCCCc
Q 005038 101 ENNEIKAEITESHSLIAPKFQLNTLSLSSNYGDGFIFPKFLYHQHDLEYVDLSHIKMN 158 (717)
Q Consensus 101 ~~n~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~ 158 (717)
-+|++.... +.-...+..+++|+.||+.+..-.
T Consensus 121 l~Npv~~k~-------------------------~YR~yvl~klp~l~~LDF~kVt~~ 153 (233)
T KOG1644|consen 121 LGNPVEHKK-------------------------NYRLYVLYKLPSLRTLDFQKVTRK 153 (233)
T ss_pred cCCchhccc-------------------------CceeEEEEecCcceEeehhhhhHH
Confidence 555543211 122345667888999998876543
No 53
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=98.03 E-value=7.3e-07 Score=82.38 Aligned_cols=113 Identities=20% Similarity=0.179 Sum_probs=59.6
Q ss_pred cCCCCCCEEEccCCccccccchhhh----hCCCCCCEEEccCcccCccC-----cccccCCCCCCeEECcCCcCcccC--
Q 005038 240 GNMKFLQILDLSNNHLTGEIPEHLA----VGCVNLQFLALSNNNLQGHL-----FSRNFNLTNLQWLQLEGNRFVGEI-- 308 (717)
Q Consensus 240 ~~l~~L~~L~Ls~n~l~~~~~~~~~----~~~~~L~~L~L~~n~i~~~~-----~~~~~~l~~L~~L~L~~n~l~~~~-- 308 (717)
.+-|.|++.....|++. ..+.... ..-.+|+++.+..|.|.-.. ...+..+.+|+.|||.+|.++...
T Consensus 154 a~kp~Le~vicgrNRle-ngs~~~~a~~l~sh~~lk~vki~qNgIrpegv~~L~~~gl~y~~~LevLDlqDNtft~~gS~ 232 (388)
T COG5238 154 ADKPKLEVVICGRNRLE-NGSKELSAALLESHENLKEVKIQQNGIRPEGVTMLAFLGLFYSHSLEVLDLQDNTFTLEGSR 232 (388)
T ss_pred ccCCCceEEEeccchhc-cCcHHHHHHHHHhhcCceeEEeeecCcCcchhHHHHHHHHHHhCcceeeeccccchhhhhHH
Confidence 34567778888777776 4443322 11246777777777765211 112234567777777777665322
Q ss_pred --cccccCCCCCCEEEccCCcCcCcCCccc----C--CCCCCCEEEccCCccc
Q 005038 309 --PQSLSKCSSLEGLYLNNNSLLGKIPRWL----G--NLTRLQYIIMPNNHLE 353 (717)
Q Consensus 309 --~~~~~~l~~L~~L~L~~n~~~~~~~~~~----~--~l~~L~~L~l~~n~~~ 353 (717)
..++..-+.|+.|.+.+|-++......+ . ..++|..|...+|.+.
T Consensus 233 ~La~al~~W~~lrEL~lnDClls~~G~~~v~~~f~e~~~p~l~~L~~~Yne~~ 285 (388)
T COG5238 233 YLADALCEWNLLRELRLNDCLLSNEGVKSVLRRFNEKFVPNLMPLPGDYNERR 285 (388)
T ss_pred HHHHHhcccchhhhccccchhhccccHHHHHHHhhhhcCCCccccccchhhhc
Confidence 1233344556666666665543332211 1 1345555555555443
No 54
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=98.01 E-value=1.5e-07 Score=92.29 Aligned_cols=234 Identities=19% Similarity=0.158 Sum_probs=106.2
Q ss_pred cCCCCCCEEEccCC-CCcccCChhhhhCCCCCCEEEccCCcCc-cc-CccCcCCCCCcCEEEccCCcCC-ccCCcccccc
Q 005038 142 YHQHDLEYVDLSHI-KMNGEFPNWLLENNTKLETLFLVNDSLA-GP-FRLPIHSHKRLRQLDVSNNNIR-GHIPVKIGDV 217 (717)
Q Consensus 142 ~~~~~L~~L~l~~~-~~~~~~~~~~~~~~~~L~~L~l~~n~~~-~~-~~~~~~~~~~L~~L~ls~n~i~-~~~~~~~~~~ 217 (717)
..|++|+++++..| .+++..-+.+...+++|++++++.|... +. +..-..+++.++.+.+.+|.-. .+.-..+...
T Consensus 187 ~~C~~l~~l~L~~c~~iT~~~Lk~la~gC~kL~~lNlSwc~qi~~~gv~~~~rG~~~l~~~~~kGC~e~~le~l~~~~~~ 266 (483)
T KOG4341|consen 187 RYCRKLRHLNLHSCSSITDVSLKYLAEGCRKLKYLNLSWCPQISGNGVQALQRGCKELEKLSLKGCLELELEALLKAAAY 266 (483)
T ss_pred HhcchhhhhhhcccchhHHHHHHHHHHhhhhHHHhhhccCchhhcCcchHHhccchhhhhhhhcccccccHHHHHHHhcc
Confidence 35566666666663 3443333444455666666666665322 21 1112334445555544443211 0000111112
Q ss_pred CCCCcEEECCCCCC-Ccc-CCccccCCCCCCEEEccCC-ccccccchhhhhCCCCCCEEEccCccc-CccCcccc-cCCC
Q 005038 218 LPSLYVFNNSMNAL-DGS-IPSSFGNMKFLQILDLSNN-HLTGEIPEHLAVGCVNLQFLALSNNNL-QGHLFSRN-FNLT 292 (717)
Q Consensus 218 l~~L~~L~l~~n~~-~~~-~~~~l~~l~~L~~L~Ls~n-~l~~~~~~~~~~~~~~L~~L~L~~n~i-~~~~~~~~-~~l~ 292 (717)
...+..+++..|.. +.. +...-..+..|++|+.+++ .+++.+-..+..++.+|+.+.++.++- +..-...+ .+++
T Consensus 267 ~~~i~~lnl~~c~~lTD~~~~~i~~~c~~lq~l~~s~~t~~~d~~l~aLg~~~~~L~~l~l~~c~~fsd~~ft~l~rn~~ 346 (483)
T KOG4341|consen 267 CLEILKLNLQHCNQLTDEDLWLIACGCHALQVLCYSSCTDITDEVLWALGQHCHNLQVLELSGCQQFSDRGFTMLGRNCP 346 (483)
T ss_pred ChHhhccchhhhccccchHHHHHhhhhhHhhhhcccCCCCCchHHHHHHhcCCCceEEEeccccchhhhhhhhhhhcCCh
Confidence 23344444433321 111 0111123456666666654 333333444455566677766666542 21111111 2456
Q ss_pred CCCeEECcCCcCccc--CcccccCCCCCCEEEccCCcCc-Cc----CCcccCCCCCCCEEEccCCccc-CCcccccCCCC
Q 005038 293 NLQWLQLEGNRFVGE--IPQSLSKCSSLEGLYLNNNSLL-GK----IPRWLGNLTRLQYIIMPNNHLE-GPIPVEFCQLD 364 (717)
Q Consensus 293 ~L~~L~L~~n~l~~~--~~~~~~~l~~L~~L~L~~n~~~-~~----~~~~~~~l~~L~~L~l~~n~~~-~~~~~~~~~l~ 364 (717)
.|+.+++..+..... +...-.+++.|+.+.++++... +. ....-.++..|..+.++++... +.....+..++
T Consensus 347 ~Le~l~~e~~~~~~d~tL~sls~~C~~lr~lslshce~itD~gi~~l~~~~c~~~~l~~lEL~n~p~i~d~~Le~l~~c~ 426 (483)
T KOG4341|consen 347 HLERLDLEECGLITDGTLASLSRNCPRLRVLSLSHCELITDEGIRHLSSSSCSLEGLEVLELDNCPLITDATLEHLSICR 426 (483)
T ss_pred hhhhhcccccceehhhhHhhhccCCchhccCChhhhhhhhhhhhhhhhhccccccccceeeecCCCCchHHHHHHHhhCc
Confidence 666666666543311 1112234566667766666432 11 0111233556666777666532 22333455666
Q ss_pred CCCEEEccCCc
Q 005038 365 SLQILDISDNN 375 (717)
Q Consensus 365 ~L~~L~l~~n~ 375 (717)
+|+.+++-+++
T Consensus 427 ~Leri~l~~~q 437 (483)
T KOG4341|consen 427 NLERIELIDCQ 437 (483)
T ss_pred ccceeeeechh
Confidence 77777766654
No 55
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=97.87 E-value=7.1e-06 Score=54.80 Aligned_cols=34 Identities=44% Similarity=0.791 Sum_probs=12.2
Q ss_pred CCeEeCCCcccCCCCCcCCCCCCCCCEEECCCCcC
Q 005038 563 IQTLNLSHNNLTGSIPSTFSNLKHVESLDLSNNKL 597 (717)
Q Consensus 563 L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~N~i 597 (717)
|++|++++|+|+ .+|..++++++|+.|++++|++
T Consensus 3 L~~L~l~~N~i~-~l~~~l~~l~~L~~L~l~~N~i 36 (44)
T PF12799_consen 3 LEELDLSNNQIT-DLPPELSNLPNLETLNLSNNPI 36 (44)
T ss_dssp -SEEEETSSS-S-SHGGHGTTCTTSSEEEETSSCC
T ss_pred ceEEEccCCCCc-ccCchHhCCCCCCEEEecCCCC
Confidence 334444444443 2222333444444444444433
No 56
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=97.84 E-value=4.6e-07 Score=88.96 Aligned_cols=210 Identities=20% Similarity=0.084 Sum_probs=107.6
Q ss_pred CccccEEEccCCCCCCCC-CchhhcCCCCCCEEEccCCCCcc-cCChhhhhCCCCCCEEEccCCcCcccCc--cCcCCCC
Q 005038 119 KFQLNTLSLSSNYGDGFI-FPKFLYHQHDLEYVDLSHIKMNG-EFPNWLLENNTKLETLFLVNDSLAGPFR--LPIHSHK 194 (717)
Q Consensus 119 ~~~L~~L~l~~~~~~~~~-~~~~l~~~~~L~~L~l~~~~~~~-~~~~~~~~~~~~L~~L~l~~n~~~~~~~--~~~~~~~ 194 (717)
+.+|++|+++|+....+. +......++.++.+.+.+|.-.+ +.-......+.-+..+++..|....... ..-..+.
T Consensus 215 C~kL~~lNlSwc~qi~~~gv~~~~rG~~~l~~~~~kGC~e~~le~l~~~~~~~~~i~~lnl~~c~~lTD~~~~~i~~~c~ 294 (483)
T KOG4341|consen 215 CRKLKYLNLSWCPQISGNGVQALQRGCKELEKLSLKGCLELELEALLKAAAYCLEILKLNLQHCNQLTDEDLWLIACGCH 294 (483)
T ss_pred hhhHHHhhhccCchhhcCcchHHhccchhhhhhhhcccccccHHHHHHHhccChHhhccchhhhccccchHHHHHhhhhh
Confidence 335555555555444332 22233444555555555542110 0001111233345555554553221110 1112356
Q ss_pred CcCEEEccCC-cCCccCCccccccCCCCcEEECCCCCCCccC-Cc-cccCCCCCCEEEccCCcccccc-chhhhhCCCCC
Q 005038 195 RLRQLDVSNN-NIRGHIPVKIGDVLPSLYVFNNSMNALDGSI-PS-SFGNMKFLQILDLSNNHLTGEI-PEHLAVGCVNL 270 (717)
Q Consensus 195 ~L~~L~ls~n-~i~~~~~~~~~~~l~~L~~L~l~~n~~~~~~-~~-~l~~l~~L~~L~Ls~n~l~~~~-~~~~~~~~~~L 270 (717)
.|+.|+.+++ .++...-..++...++|+++.++.++--+.. -. --.+.+.|+.+++..+...... -.....+++.|
T Consensus 295 ~lq~l~~s~~t~~~d~~l~aLg~~~~~L~~l~l~~c~~fsd~~ft~l~rn~~~Le~l~~e~~~~~~d~tL~sls~~C~~l 374 (483)
T KOG4341|consen 295 ALQVLCYSSCTDITDEVLWALGQHCHNLQVLELSGCQQFSDRGFTMLGRNCPHLERLDLEECGLITDGTLASLSRNCPRL 374 (483)
T ss_pred HhhhhcccCCCCCchHHHHHHhcCCCceEEEeccccchhhhhhhhhhhcCChhhhhhcccccceehhhhHhhhccCCchh
Confidence 6777776664 3443344455556677777777776521110 00 1135677888888777443111 22333467888
Q ss_pred CEEEccCcccCccC-----cccccCCCCCCeEECcCCcCcc-cCcccccCCCCCCEEEccCCcC
Q 005038 271 QFLALSNNNLQGHL-----FSRNFNLTNLQWLQLEGNRFVG-EIPQSLSKCSSLEGLYLNNNSL 328 (717)
Q Consensus 271 ~~L~L~~n~i~~~~-----~~~~~~l~~L~~L~L~~n~l~~-~~~~~~~~l~~L~~L~L~~n~~ 328 (717)
+++.++++...... ...-..+..|+.+.|+++.... ..-+.+..+++|+.+++.+++-
T Consensus 375 r~lslshce~itD~gi~~l~~~~c~~~~l~~lEL~n~p~i~d~~Le~l~~c~~Leri~l~~~q~ 438 (483)
T KOG4341|consen 375 RVLSLSHCELITDEGIRHLSSSSCSLEGLEVLELDNCPLITDATLEHLSICRNLERIELIDCQD 438 (483)
T ss_pred ccCChhhhhhhhhhhhhhhhhccccccccceeeecCCCCchHHHHHHHhhCcccceeeeechhh
Confidence 88888877543111 1122356778888888887553 2234567788899988888753
No 57
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=97.83 E-value=4.1e-05 Score=68.10 Aligned_cols=104 Identities=27% Similarity=0.314 Sum_probs=60.6
Q ss_pred CEEEccCCcCCccCCccccccCCCCcEEECCCCCCCccCCccccCCCCCCEEEccCCccccccchhhhhCCCCCCEEEcc
Q 005038 197 RQLDVSNNNIRGHIPVKIGDVLPSLYVFNNSMNALDGSIPSSFGNMKFLQILDLSNNHLTGEIPEHLAVGCVNLQFLALS 276 (717)
Q Consensus 197 ~~L~ls~n~i~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~L~~L~L~ 276 (717)
+.+++.+.++. .....+........+++++|.+.. -+.|..++.|.+|.+.+|+|+ .+...+...+++|+.|.+.
T Consensus 22 ~e~~LR~lkip--~ienlg~~~d~~d~iDLtdNdl~~--l~~lp~l~rL~tLll~nNrIt-~I~p~L~~~~p~l~~L~Lt 96 (233)
T KOG1644|consen 22 RELDLRGLKIP--VIENLGATLDQFDAIDLTDNDLRK--LDNLPHLPRLHTLLLNNNRIT-RIDPDLDTFLPNLKTLILT 96 (233)
T ss_pred ccccccccccc--chhhccccccccceecccccchhh--cccCCCccccceEEecCCcce-eeccchhhhccccceEEec
Confidence 44555555443 112233334456667777776653 233667777888888888887 6666666666777777777
Q ss_pred CcccCccC-cccccCCCCCCeEECcCCcCc
Q 005038 277 NNNLQGHL-FSRNFNLTNLQWLQLEGNRFV 305 (717)
Q Consensus 277 ~n~i~~~~-~~~~~~l~~L~~L~L~~n~l~ 305 (717)
+|+|.... ...+..+++|++|.+-+|.+.
T Consensus 97 nNsi~~l~dl~pLa~~p~L~~Ltll~Npv~ 126 (233)
T KOG1644|consen 97 NNSIQELGDLDPLASCPKLEYLTLLGNPVE 126 (233)
T ss_pred CcchhhhhhcchhccCCccceeeecCCchh
Confidence 77765211 123334556666666555544
No 58
>PRK15386 type III secretion protein GogB; Provisional
Probab=97.71 E-value=8.5e-05 Score=75.38 Aligned_cols=54 Identities=13% Similarity=0.158 Sum_probs=23.2
Q ss_pred CCcCCEEeCCCCcCCcccchhhhCCCCCcEEEcCCCccccccchhccCCCCCCEEEccCC
Q 005038 411 CSSLVTLDLSYNRLNGSIPDWVDGLSQLSHLILGHNNLEGEVSVQLCELNQLQLLDLSNN 470 (717)
Q Consensus 411 ~~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n 470 (717)
+.+++.|++++|.++ .+|. + .++|+.|.+++|.-....|..+ .++|+.|++++|
T Consensus 51 ~~~l~~L~Is~c~L~-sLP~-L--P~sLtsL~Lsnc~nLtsLP~~L--P~nLe~L~Ls~C 104 (426)
T PRK15386 51 ARASGRLYIKDCDIE-SLPV-L--PNELTEITIENCNNLTTLPGSI--PEGLEKLTVCHC 104 (426)
T ss_pred hcCCCEEEeCCCCCc-ccCC-C--CCCCcEEEccCCCCcccCCchh--hhhhhheEccCc
Confidence 345555555555444 2231 1 1245555555433222333322 134555555555
No 59
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=97.65 E-value=4.6e-06 Score=68.97 Aligned_cols=83 Identities=24% Similarity=0.326 Sum_probs=66.2
Q ss_pred ccceeeCCCCccCCCCcccccCCccCCeEeCCCcccCCCCCcCCCCCCCCCEEECCCCcCCccCchhhcCCCCCCEEecc
Q 005038 538 LLSGLDLSCNKLIGHIPPQIGNLTRIQTLNLSHNNLTGSIPSTFSNLKHVESLDLSNNKLNGKIPHQLVELKTLEVFSVA 617 (717)
Q Consensus 538 ~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~N~i~~~~p~~~~~l~~L~~L~l~ 617 (717)
.|+..+|++|.+....+..-...+..+.|++++|.|+ .+|..+..++.|+.|+++.|++. ..|..+..+.++-.||..
T Consensus 54 el~~i~ls~N~fk~fp~kft~kf~t~t~lNl~~neis-dvPeE~Aam~aLr~lNl~~N~l~-~~p~vi~~L~~l~~Lds~ 131 (177)
T KOG4579|consen 54 ELTKISLSDNGFKKFPKKFTIKFPTATTLNLANNEIS-DVPEELAAMPALRSLNLRFNPLN-AEPRVIAPLIKLDMLDSP 131 (177)
T ss_pred eEEEEecccchhhhCCHHHhhccchhhhhhcchhhhh-hchHHHhhhHHhhhcccccCccc-cchHHHHHHHhHHHhcCC
Confidence 4778889999888544443445568888999999998 66777888999999999999987 777777788888888888
Q ss_pred CCcCe
Q 005038 618 YNNLS 622 (717)
Q Consensus 618 ~N~l~ 622 (717)
+|.+-
T Consensus 132 ~na~~ 136 (177)
T KOG4579|consen 132 ENARA 136 (177)
T ss_pred CCccc
Confidence 88766
No 60
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=97.62 E-value=2.1e-05 Score=73.17 Aligned_cols=90 Identities=21% Similarity=0.242 Sum_probs=48.2
Q ss_pred cccCCCCCCeeeCCCCCCCCCcchhccCCCCCCEEeCCCC--CCcccCCccccCCCCCCCEEECCCCcccCcCCcccccC
Q 005038 14 GLCSLVHLQELYIASNDLRGSLPWCMANMTSLRILDVSSN--QLTGSISSSPLVHLTSIEELMLSNNYFQIPISLEPLFN 91 (717)
Q Consensus 14 ~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n--~i~~~i~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~ 91 (717)
.+..+..|+.|++.+..++.. ..|-.+++|+.|++|.| ++++.++. ...++++|+++++++|++...-....+..
T Consensus 38 l~d~~~~le~ls~~n~gltt~--~~~P~Lp~LkkL~lsdn~~~~~~~l~v-l~e~~P~l~~l~ls~Nki~~lstl~pl~~ 114 (260)
T KOG2739|consen 38 LTDEFVELELLSVINVGLTTL--TNFPKLPKLKKLELSDNYRRVSGGLEV-LAEKAPNLKVLNLSGNKIKDLSTLRPLKE 114 (260)
T ss_pred ccccccchhhhhhhccceeec--ccCCCcchhhhhcccCCccccccccee-hhhhCCceeEEeecCCccccccccchhhh
Confidence 445555555555555555422 22445566666666666 44444433 33445666666666666653333344555
Q ss_pred CCCCCEEEccCCccc
Q 005038 92 YSRLKIFNAENNEIK 106 (717)
Q Consensus 92 l~~L~~L~l~~n~l~ 106 (717)
+.+|..|++..|..+
T Consensus 115 l~nL~~Ldl~n~~~~ 129 (260)
T KOG2739|consen 115 LENLKSLDLFNCSVT 129 (260)
T ss_pred hcchhhhhcccCCcc
Confidence 556666666555443
No 61
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=97.56 E-value=0.00021 Score=61.86 Aligned_cols=122 Identities=19% Similarity=0.244 Sum_probs=46.0
Q ss_pred cccCCCCCCEEEccCCccccccchhhhhCCCCCCEEEccCcccCccCcccccCCCCCCeEECcCCcCcccCcccccCCCC
Q 005038 238 SFGNMKFLQILDLSNNHLTGEIPEHLAVGCVNLQFLALSNNNLQGHLFSRNFNLTNLQWLQLEGNRFVGEIPQSLSKCSS 317 (717)
Q Consensus 238 ~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~ 317 (717)
+|.++++|+.+.+.. .+. .++...+.++++|+.+.+..+ +.......|.++++++.+.+.+ .+.......|..+++
T Consensus 7 ~F~~~~~l~~i~~~~-~~~-~I~~~~F~~~~~l~~i~~~~~-~~~i~~~~F~~~~~l~~i~~~~-~~~~i~~~~F~~~~~ 82 (129)
T PF13306_consen 7 AFYNCSNLESITFPN-TIK-KIGENAFSNCTSLKSINFPNN-LTSIGDNAFSNCKSLESITFPN-NLKSIGDNAFSNCTN 82 (129)
T ss_dssp TTTT-TT--EEEETS-T---EE-TTTTTT-TT-SEEEESST-TSCE-TTTTTT-TT-EEEEETS-TT-EE-TTTTTT-TT
T ss_pred HHhCCCCCCEEEECC-Cee-EeChhhccccccccccccccc-ccccceeeeecccccccccccc-ccccccccccccccc
Confidence 345555555555553 343 455555555555666655543 4444444555555556655544 233233344555556
Q ss_pred CCEEEccCCcCcCcCCcccCCCCCCCEEEccCCcccCCcccccCCCCCC
Q 005038 318 LEGLYLNNNSLLGKIPRWLGNLTRLQYIIMPNNHLEGPIPVEFCQLDSL 366 (717)
Q Consensus 318 L~~L~L~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L 366 (717)
++.+++..+ +.......|.+. +++.+.+.. .+..+....|.++++|
T Consensus 83 l~~i~~~~~-~~~i~~~~f~~~-~l~~i~~~~-~~~~i~~~~F~~~~~l 128 (129)
T PF13306_consen 83 LKNIDIPSN-ITEIGSSSFSNC-NLKEINIPS-NITKIEENAFKNCTKL 128 (129)
T ss_dssp ECEEEETTT--BEEHTTTTTT--T--EEE-TT-B-SS----GGG-----
T ss_pred ccccccCcc-ccEEchhhhcCC-CceEEEECC-CccEECCccccccccC
Confidence 666665443 332333445444 555555544 2232344445444444
No 62
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=97.55 E-value=3.9e-05 Score=84.80 Aligned_cols=87 Identities=25% Similarity=0.296 Sum_probs=39.1
Q ss_pred CCCCcCEEEccCCcCCccCCccccccCCCCcEEECCCCCCCc-cCCccccCCCCCCEEEccCCccccccc---hh---hh
Q 005038 192 SHKRLRQLDVSNNNIRGHIPVKIGDVLPSLYVFNNSMNALDG-SIPSSFGNMKFLQILDLSNNHLTGEIP---EH---LA 264 (717)
Q Consensus 192 ~~~~L~~L~ls~n~i~~~~~~~~~~~l~~L~~L~l~~n~~~~-~~~~~l~~l~~L~~L~Ls~n~l~~~~~---~~---~~ 264 (717)
++++|+.||+|+++++. + ..-+.+++|++|.+.+-.+.. ..-..+.++++|++||+|..+.. ..+ .. ..
T Consensus 171 sFpNL~sLDIS~TnI~n-l--~GIS~LknLq~L~mrnLe~e~~~~l~~LF~L~~L~vLDIS~~~~~-~~~~ii~qYlec~ 246 (699)
T KOG3665|consen 171 SFPNLRSLDISGTNISN-L--SGISRLKNLQVLSMRNLEFESYQDLIDLFNLKKLRVLDISRDKNN-DDTKIIEQYLECG 246 (699)
T ss_pred ccCccceeecCCCCccC-c--HHHhccccHHHHhccCCCCCchhhHHHHhcccCCCeeeccccccc-cchHHHHHHHHhc
Confidence 34455555555554441 1 111224445554444433321 11123455666666666655433 111 11 11
Q ss_pred hCCCCCCEEEccCcccCc
Q 005038 265 VGCVNLQFLALSNNNLQG 282 (717)
Q Consensus 265 ~~~~~L~~L~L~~n~i~~ 282 (717)
..+|+|+.||.|++.+..
T Consensus 247 ~~LpeLrfLDcSgTdi~~ 264 (699)
T KOG3665|consen 247 MVLPELRFLDCSGTDINE 264 (699)
T ss_pred ccCccccEEecCCcchhH
Confidence 135667777776665553
No 63
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=97.53 E-value=2e-05 Score=87.12 Aligned_cols=154 Identities=19% Similarity=0.199 Sum_probs=81.7
Q ss_pred CCCCeeeCCCCCCC-CCcchhcc-CCCCCCEEeCCCCCCcccCCccccCCCCCCCEEECCCCcccCcCCcccccCCCCCC
Q 005038 19 VHLQELYIASNDLR-GSLPWCMA-NMTSLRILDVSSNQLTGSISSSPLVHLTSIEELMLSNNYFQIPISLEPLFNYSRLK 96 (717)
Q Consensus 19 ~~L~~L~Ls~n~i~-~~~~~~~~-~l~~L~~L~Ls~n~i~~~i~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~ 96 (717)
.+|++||+++...- ..=|..++ .+|.|++|.+++-.+...=-...+.++++|..||+|+.+++.- ..++++++|+
T Consensus 122 ~nL~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~nl---~GIS~LknLq 198 (699)
T KOG3665|consen 122 QNLQHLDISGSELFSNGWPKKIGTMLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNISNL---SGISRLKNLQ 198 (699)
T ss_pred HhhhhcCccccchhhccHHHHHhhhCcccceEEecCceecchhHHHHhhccCccceeecCCCCccCc---HHHhccccHH
Confidence 46778888775432 12233343 4688888888776553110012456678888888888777622 3466777777
Q ss_pred EEEccCCcccccccccccccCCCccccEEEccCCCCCCCC-Cc----hhhcCCCCCCEEEccCCCCcccCChhhhhCCCC
Q 005038 97 IFNAENNEIKAEITESHSLIAPKFQLNTLSLSSNYGDGFI-FP----KFLYHQHDLEYVDLSHIKMNGEFPNWLLENNTK 171 (717)
Q Consensus 97 ~L~l~~n~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~-~~----~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~ 171 (717)
.|.+.+-.+.. ......+..+++|+.||+|........ +. +.-..+++|+.||.++..+.+.+-+.+....++
T Consensus 199 ~L~mrnLe~e~--~~~l~~LF~L~~L~vLDIS~~~~~~~~~ii~qYlec~~~LpeLrfLDcSgTdi~~~~le~ll~sH~~ 276 (699)
T KOG3665|consen 199 VLSMRNLEFES--YQDLIDLFNLKKLRVLDISRDKNNDDTKIIEQYLECGMVLPELRFLDCSGTDINEEILEELLNSHPN 276 (699)
T ss_pred HHhccCCCCCc--hhhHHHHhcccCCCeeeccccccccchHHHHHHHHhcccCccccEEecCCcchhHHHHHHHHHhCcc
Confidence 77766544432 111122444556666666443332221 01 111235566666666666655544444444444
Q ss_pred CCEEEc
Q 005038 172 LETLFL 177 (717)
Q Consensus 172 L~~L~l 177 (717)
|+.+.+
T Consensus 277 L~~i~~ 282 (699)
T KOG3665|consen 277 LQQIAA 282 (699)
T ss_pred Hhhhhh
Confidence 444443
No 64
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=97.47 E-value=0.00027 Score=61.18 Aligned_cols=118 Identities=22% Similarity=0.266 Sum_probs=49.5
Q ss_pred CCCCcEEECCCCCCCccCCccccCCCCCCEEEccCCccccccchhhhhCCCCCCEEEccCcccCccCcccccCCCCCCeE
Q 005038 218 LPSLYVFNNSMNALDGSIPSSFGNMKFLQILDLSNNHLTGEIPEHLAVGCVNLQFLALSNNNLQGHLFSRNFNLTNLQWL 297 (717)
Q Consensus 218 l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L 297 (717)
+++|+.+.+.. .+.......|..+++|+.+.+..+ +. .++...+.++++++.+.+.. .+.......|..+++|+.+
T Consensus 11 ~~~l~~i~~~~-~~~~I~~~~F~~~~~l~~i~~~~~-~~-~i~~~~F~~~~~l~~i~~~~-~~~~i~~~~F~~~~~l~~i 86 (129)
T PF13306_consen 11 CSNLESITFPN-TIKKIGENAFSNCTSLKSINFPNN-LT-SIGDNAFSNCKSLESITFPN-NLKSIGDNAFSNCTNLKNI 86 (129)
T ss_dssp -TT--EEEETS-T--EE-TTTTTT-TT-SEEEESST-TS-CE-TTTTTT-TT-EEEEETS-TT-EE-TTTTTT-TTECEE
T ss_pred CCCCCEEEECC-CeeEeChhhccccccccccccccc-cc-ccceeeeecccccccccccc-ccccccccccccccccccc
Confidence 33444444432 233333444666666666666654 44 55666666666677776654 4443444555666777777
Q ss_pred ECcCCcCcccCcccccCCCCCCEEEccCCcCcCcCCcccCCCCCC
Q 005038 298 QLEGNRFVGEIPQSLSKCSSLEGLYLNNNSLLGKIPRWLGNLTRL 342 (717)
Q Consensus 298 ~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L 342 (717)
++..+ +.......|..+ +++.+.+.. .+.......|.++++|
T Consensus 87 ~~~~~-~~~i~~~~f~~~-~l~~i~~~~-~~~~i~~~~F~~~~~l 128 (129)
T PF13306_consen 87 DIPSN-ITEIGSSSFSNC-NLKEINIPS-NITKIEENAFKNCTKL 128 (129)
T ss_dssp EETTT--BEEHTTTTTT--T--EEE-TT-B-SS----GGG-----
T ss_pred ccCcc-ccEEchhhhcCC-CceEEEECC-CccEECCccccccccC
Confidence 77554 443444556665 677776654 3333444555555554
No 65
>PRK15386 type III secretion protein GogB; Provisional
Probab=97.45 E-value=0.00045 Score=70.27 Aligned_cols=42 Identities=19% Similarity=0.268 Sum_probs=29.9
Q ss_pred hhCCCCCcEEEcCCCccccccchhccCCCCCCEEEccCCcCccCCC
Q 005038 432 VDGLSQLSHLILGHNNLEGEVSVQLCELNQLQLLDLSNNNLHGPIP 477 (717)
Q Consensus 432 ~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~ 477 (717)
+..+.+++.|++++|.++.. |. -.++|+.|.+++|.-....|
T Consensus 48 ~~~~~~l~~L~Is~c~L~sL-P~---LP~sLtsL~Lsnc~nLtsLP 89 (426)
T PRK15386 48 IEEARASGRLYIKDCDIESL-PV---LPNELTEITIENCNNLTTLP 89 (426)
T ss_pred HHHhcCCCEEEeCCCCCccc-CC---CCCCCcEEEccCCCCcccCC
Confidence 45578999999999988844 41 23479999999865433444
No 66
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=96.94 E-value=0.00032 Score=65.50 Aligned_cols=86 Identities=22% Similarity=0.337 Sum_probs=63.9
Q ss_pred cccCCCCCCeeeCCCC--CCCCCcchhccCCCCCCEEeCCCCCCcccCCc-cccCCCCCCCEEECCCCcccCc--CCccc
Q 005038 14 GLCSLVHLQELYIASN--DLRGSLPWCMANMTSLRILDVSSNQLTGSISS-SPLVHLTSIEELMLSNNYFQIP--ISLEP 88 (717)
Q Consensus 14 ~~~~l~~L~~L~Ls~n--~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~i~~-~~~~~l~~L~~L~L~~n~~~~~--~~~~~ 88 (717)
.|-.+++|++|.+|.| ++.+.++-....+++|++|++|+|+|. .+.. .....+.+|..|++.+|.-+.- .-...
T Consensus 60 ~~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~-~lstl~pl~~l~nL~~Ldl~n~~~~~l~dyre~v 138 (260)
T KOG2739|consen 60 NFPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIK-DLSTLRPLKELENLKSLDLFNCSVTNLDDYREKV 138 (260)
T ss_pred cCCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCccc-cccccchhhhhcchhhhhcccCCccccccHHHHH
Confidence 4778899999999999 777666666677899999999999986 2222 2367888999999999876531 11124
Q ss_pred ccCCCCCCEEEc
Q 005038 89 LFNYSRLKIFNA 100 (717)
Q Consensus 89 ~~~l~~L~~L~l 100 (717)
|.-+++|++|+-
T Consensus 139 f~ll~~L~~LD~ 150 (260)
T KOG2739|consen 139 FLLLPSLKYLDG 150 (260)
T ss_pred HHHhhhhccccc
Confidence 556778887764
No 67
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=96.76 E-value=0.00012 Score=79.85 Aligned_cols=64 Identities=31% Similarity=0.254 Sum_probs=29.8
Q ss_pred CCCCCCEEEccCCc-cccccchhhhhCCCCCCEEEccCcc-cCccCccc-ccCCCCCCeEECcCCcC
Q 005038 241 NMKFLQILDLSNNH-LTGEIPEHLAVGCVNLQFLALSNNN-LQGHLFSR-NFNLTNLQWLQLEGNRF 304 (717)
Q Consensus 241 ~l~~L~~L~Ls~n~-l~~~~~~~~~~~~~~L~~L~L~~n~-i~~~~~~~-~~~l~~L~~L~L~~n~l 304 (717)
.+++|+.|+++.+. +++..-..+...|++|++|.+.++. ++...... ...++.|++|+++.|..
T Consensus 241 ~~~~L~~l~l~~~~~isd~~l~~l~~~c~~L~~L~l~~c~~lt~~gl~~i~~~~~~L~~L~l~~c~~ 307 (482)
T KOG1947|consen 241 ICRKLKSLDLSGCGLVTDIGLSALASRCPNLETLSLSNCSNLTDEGLVSIAERCPSLRELDLSGCHG 307 (482)
T ss_pred hcCCcCccchhhhhccCchhHHHHHhhCCCcceEccCCCCccchhHHHHHHHhcCcccEEeeecCcc
Confidence 34555555555554 4433333444445566666555444 33211111 12445566666665543
No 68
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=96.10 E-value=0.0007 Score=73.91 Aligned_cols=180 Identities=21% Similarity=0.074 Sum_probs=90.2
Q ss_pred CCCCCCEEEccCCcccccccccccccCCCccccEEEccCCCCCCCC----CchhhcCCCCCCEEEccCCC-CcccCChhh
Q 005038 91 NYSRLKIFNAENNEIKAEITESHSLIAPKFQLNTLSLSSNYGDGFI----FPKFLYHQHDLEYVDLSHIK-MNGEFPNWL 165 (717)
Q Consensus 91 ~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~----~~~~l~~~~~L~~L~l~~~~-~~~~~~~~~ 165 (717)
.++.|+.+.+..+.-..... .......+++|++|+++.++..... .......+++|+.++++.+. +++..-..+
T Consensus 186 ~~~~L~~l~l~~~~~~~~~~-~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~isd~~l~~l 264 (482)
T KOG1947|consen 186 SCPLLKRLSLSGCSKITDDS-LDALALKCPNLEELDLSGCCLLITLSPLLLLLLLSICRKLKSLDLSGCGLVTDIGLSAL 264 (482)
T ss_pred hCchhhHhhhcccccCChhh-HHHHHhhCchhheecccCcccccccchhHhhhhhhhcCCcCccchhhhhccCchhHHHH
Confidence 35566666655542211100 1122344456666666432111111 11234455777777777776 554444555
Q ss_pred hhCCCCCCEEEccCCc-CcccCc-cCcCCCCCcCEEEccCCcCC-ccCCccccccCCCCcEEECCCCCCCccCCccccCC
Q 005038 166 LENNTKLETLFLVNDS-LAGPFR-LPIHSHKRLRQLDVSNNNIR-GHIPVKIGDVLPSLYVFNNSMNALDGSIPSSFGNM 242 (717)
Q Consensus 166 ~~~~~~L~~L~l~~n~-~~~~~~-~~~~~~~~L~~L~ls~n~i~-~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l 242 (717)
...+++|+.|.+.+|. +++... .....++.|++|+++++... +..-..+...+++++.+.+.... .+
T Consensus 265 ~~~c~~L~~L~l~~c~~lt~~gl~~i~~~~~~L~~L~l~~c~~~~d~~l~~~~~~c~~l~~l~~~~~~----------~c 334 (482)
T KOG1947|consen 265 ASRCPNLETLSLSNCSNLTDEGLVSIAERCPSLRELDLSGCHGLTDSGLEALLKNCPNLRELKLLSLN----------GC 334 (482)
T ss_pred HhhCCCcceEccCCCCccchhHHHHHHHhcCcccEEeeecCccchHHHHHHHHHhCcchhhhhhhhcC----------CC
Confidence 4557778888877676 443222 22345677888888876543 11111223335555554432211 14
Q ss_pred CCCCEEEccCCccc--cccchhhhhCCCCCCEEEccCcccC
Q 005038 243 KFLQILDLSNNHLT--GEIPEHLAVGCVNLQFLALSNNNLQ 281 (717)
Q Consensus 243 ~~L~~L~Ls~n~l~--~~~~~~~~~~~~~L~~L~L~~n~i~ 281 (717)
+.++.+.+...... +.........+++++.+.+..+.+.
T Consensus 335 ~~l~~~~l~~~~~~~~d~~~~~~~~~~~~l~~~~l~~~~~~ 375 (482)
T KOG1947|consen 335 PSLTDLSLSGLLTLTSDDLAELILRSCPKLTDLSLSYCGIS 375 (482)
T ss_pred ccHHHHHHHHhhccCchhHhHHHHhcCCCcchhhhhhhhcc
Confidence 44555555443221 1344445556777777777776633
No 69
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.85 E-value=0.00019 Score=67.09 Aligned_cols=83 Identities=25% Similarity=0.290 Sum_probs=54.6
Q ss_pred CCCCCeeeCCCCCCCCCcchhccCCCCCCEEeCCCCCCcccCCccccCCCCCCCEEECCCCcccCcCCcccccCCCCCCE
Q 005038 18 LVHLQELYIASNDLRGSLPWCMANMTSLRILDVSSNQLTGSISSSPLVHLTSIEELMLSNNYFQIPISLEPLFNYSRLKI 97 (717)
Q Consensus 18 l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~i~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~ 97 (717)
+.+.+.|+.=++.++++ ....+++.|+.|.||=|+|+ ++.. +..+++|++|+|..|.|........+.++++|+.
T Consensus 18 l~~vkKLNcwg~~L~DI--sic~kMp~lEVLsLSvNkIs-sL~p--l~rCtrLkElYLRkN~I~sldEL~YLknlpsLr~ 92 (388)
T KOG2123|consen 18 LENVKKLNCWGCGLDDI--SICEKMPLLEVLSLSVNKIS-SLAP--LQRCTRLKELYLRKNCIESLDELEYLKNLPSLRT 92 (388)
T ss_pred HHHhhhhcccCCCccHH--HHHHhcccceeEEeeccccc-cchh--HHHHHHHHHHHHHhcccccHHHHHHHhcCchhhh
Confidence 55666777777777654 23346677777777777776 5554 7777777777777777764444445566777777
Q ss_pred EEccCCcc
Q 005038 98 FNAENNEI 105 (717)
Q Consensus 98 L~l~~n~l 105 (717)
|-|..|.-
T Consensus 93 LWL~ENPC 100 (388)
T KOG2123|consen 93 LWLDENPC 100 (388)
T ss_pred HhhccCCc
Confidence 76666543
No 70
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.76 E-value=0.00054 Score=64.15 Aligned_cols=94 Identities=23% Similarity=0.232 Sum_probs=66.9
Q ss_pred EEEeeccceeeeccccccccceeeCCCCccCCCCcccccCCccCCeEeCCCcccCCCCC-cCCCCCCCCCEEECCCCcCC
Q 005038 520 FEFTTKNIAYIYQGKVLSLLSGLDLSCNKLIGHIPPQIGNLTRIQTLNLSHNNLTGSIP-STFSNLKHVESLDLSNNKLN 598 (717)
Q Consensus 520 ~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p-~~~~~l~~L~~L~L~~N~i~ 598 (717)
+.+.+.++..+.....++.|+.|.||-|+++... .+..+++|++|+|..|.|.++.. .-+.++++|+.|-|..|+-.
T Consensus 24 LNcwg~~L~DIsic~kMp~lEVLsLSvNkIssL~--pl~rCtrLkElYLRkN~I~sldEL~YLknlpsLr~LWL~ENPCc 101 (388)
T KOG2123|consen 24 LNCWGCGLDDISICEKMPLLEVLSLSVNKISSLA--PLQRCTRLKELYLRKNCIESLDELEYLKNLPSLRTLWLDENPCC 101 (388)
T ss_pred hcccCCCccHHHHHHhcccceeEEeeccccccch--hHHHHHHHHHHHHHhcccccHHHHHHHhcCchhhhHhhccCCcc
Confidence 4445555555555566778888888888887543 47788888888888888874322 23567888888888888887
Q ss_pred ccCch-----hhcCCCCCCEEe
Q 005038 599 GKIPH-----QLVELKTLEVFS 615 (717)
Q Consensus 599 ~~~p~-----~~~~l~~L~~L~ 615 (717)
+.-+. .+..+++|+.||
T Consensus 102 ~~ag~nYR~~VLR~LPnLkKLD 123 (388)
T KOG2123|consen 102 GEAGQNYRRKVLRVLPNLKKLD 123 (388)
T ss_pred cccchhHHHHHHHHcccchhcc
Confidence 65553 355678888776
No 71
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=94.84 E-value=0.01 Score=32.74 Aligned_cols=12 Identities=58% Similarity=0.769 Sum_probs=5.1
Q ss_pred CCeEeCCCcccC
Q 005038 563 IQTLNLSHNNLT 574 (717)
Q Consensus 563 L~~L~Ls~n~l~ 574 (717)
|++|+|++|+++
T Consensus 2 L~~Ldls~n~l~ 13 (22)
T PF00560_consen 2 LEYLDLSGNNLT 13 (22)
T ss_dssp ESEEEETSSEES
T ss_pred ccEEECCCCcCE
Confidence 344444444444
No 72
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=94.70 E-value=0.0099 Score=32.78 Aligned_cols=16 Identities=63% Similarity=0.762 Sum_probs=8.8
Q ss_pred CCEEeCCCCCCcccCCc
Q 005038 45 LRILDVSSNQLTGSISS 61 (717)
Q Consensus 45 L~~L~Ls~n~i~~~i~~ 61 (717)
|++||+++|+++ .+|.
T Consensus 2 L~~Ldls~n~l~-~ip~ 17 (22)
T PF00560_consen 2 LEYLDLSGNNLT-SIPS 17 (22)
T ss_dssp ESEEEETSSEES-EEGT
T ss_pred ccEEECCCCcCE-eCCh
Confidence 455555555555 5554
No 73
>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D ....
Probab=93.75 E-value=0.037 Score=28.21 Aligned_cols=13 Identities=62% Similarity=0.882 Sum_probs=4.9
Q ss_pred CCCEEeCCCCCCc
Q 005038 44 SLRILDVSSNQLT 56 (717)
Q Consensus 44 ~L~~L~Ls~n~i~ 56 (717)
+|+.|+|++|+++
T Consensus 2 ~L~~L~l~~n~L~ 14 (17)
T PF13504_consen 2 NLRTLDLSNNRLT 14 (17)
T ss_dssp T-SEEEETSS--S
T ss_pred ccCEEECCCCCCC
Confidence 4455555555443
No 74
>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily.
Probab=92.59 E-value=0.1 Score=30.04 Aligned_cols=21 Identities=43% Similarity=0.653 Sum_probs=12.3
Q ss_pred CCCCEEeCCCCCCcccCCcccc
Q 005038 43 TSLRILDVSSNQLTGSISSSPL 64 (717)
Q Consensus 43 ~~L~~L~Ls~n~i~~~i~~~~~ 64 (717)
++|++|+|++|.++ .+|...|
T Consensus 2 ~~L~~L~L~~N~l~-~lp~~~f 22 (26)
T smart00369 2 PNLRELDLSNNQLS-SLPPGAF 22 (26)
T ss_pred CCCCEEECCCCcCC-cCCHHHc
Confidence 45666666666665 5555443
No 75
>smart00370 LRR Leucine-rich repeats, outliers.
Probab=92.59 E-value=0.1 Score=30.04 Aligned_cols=21 Identities=43% Similarity=0.653 Sum_probs=12.3
Q ss_pred CCCCEEeCCCCCCcccCCcccc
Q 005038 43 TSLRILDVSSNQLTGSISSSPL 64 (717)
Q Consensus 43 ~~L~~L~Ls~n~i~~~i~~~~~ 64 (717)
++|++|+|++|.++ .+|...|
T Consensus 2 ~~L~~L~L~~N~l~-~lp~~~f 22 (26)
T smart00370 2 PNLRELDLSNNQLS-SLPPGAF 22 (26)
T ss_pred CCCCEEECCCCcCC-cCCHHHc
Confidence 45666666666665 5555443
No 76
>KOG0473 consensus Leucine-rich repeat protein [Function unknown]
Probab=91.94 E-value=0.0026 Score=58.08 Aligned_cols=94 Identities=17% Similarity=0.114 Sum_probs=78.5
Q ss_pred eeCcccccCCCCCCeeeCCCCCCCCCcchhccCCCCCCEEeCCCCCCcccCCccccCCCCCCCEEECCCCcccCcCCccc
Q 005038 9 VVRSQGLCSLVHLQELYIASNDLRGSLPWCMANMTSLRILDVSSNQLTGSISSSPLVHLTSIEELMLSNNYFQIPISLEP 88 (717)
Q Consensus 9 ~i~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~i~~~~~~~l~~L~~L~L~~n~~~~~~~~~~ 88 (717)
+||-..+..+...+.||++.|++. .+-..|+.++.|..||++.|.+. .+|. .+..+..++.+++.+|..+ ..| ..
T Consensus 32 ~~~v~ei~~~kr~tvld~~s~r~v-n~~~n~s~~t~~~rl~~sknq~~-~~~~-d~~q~~e~~~~~~~~n~~~-~~p-~s 106 (326)
T KOG0473|consen 32 EIPVREIASFKRVTVLDLSSNRLV-NLGKNFSILTRLVRLDLSKNQIK-FLPK-DAKQQRETVNAASHKNNHS-QQP-KS 106 (326)
T ss_pred ccchhhhhccceeeeehhhhhHHH-hhccchHHHHHHHHHhccHhhHh-hChh-hHHHHHHHHHHHhhccchh-hCC-cc
Confidence 777778899999999999999887 44556778889999999999997 7777 7888899999999988876 344 46
Q ss_pred ccCCCCCCEEEccCCcccc
Q 005038 89 LFNYSRLKIFNAENNEIKA 107 (717)
Q Consensus 89 ~~~l~~L~~L~l~~n~l~~ 107 (717)
+...+++++++..++.+..
T Consensus 107 ~~k~~~~k~~e~k~~~~~~ 125 (326)
T KOG0473|consen 107 QKKEPHPKKNEQKKTEFFR 125 (326)
T ss_pred ccccCCcchhhhccCcchH
Confidence 8899999999999887653
No 77
>smart00370 LRR Leucine-rich repeats, outliers.
Probab=90.40 E-value=0.28 Score=28.23 Aligned_cols=14 Identities=50% Similarity=0.759 Sum_probs=8.3
Q ss_pred CCCCEEECCCCcCC
Q 005038 585 KHVESLDLSNNKLN 598 (717)
Q Consensus 585 ~~L~~L~L~~N~i~ 598 (717)
++|++|+|++|++.
T Consensus 2 ~~L~~L~L~~N~l~ 15 (26)
T smart00370 2 PNLRELDLSNNQLS 15 (26)
T ss_pred CCCCEEECCCCcCC
Confidence 45566666666665
No 78
>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily.
Probab=90.40 E-value=0.28 Score=28.23 Aligned_cols=14 Identities=50% Similarity=0.759 Sum_probs=8.3
Q ss_pred CCCCEEECCCCcCC
Q 005038 585 KHVESLDLSNNKLN 598 (717)
Q Consensus 585 ~~L~~L~L~~N~i~ 598 (717)
++|++|+|++|++.
T Consensus 2 ~~L~~L~L~~N~l~ 15 (26)
T smart00369 2 PNLRELDLSNNQLS 15 (26)
T ss_pred CCCCEEECCCCcCC
Confidence 45566666666665
No 79
>TIGR00864 PCC polycystin cation channel protein. Note: this model has been restricted to the amino half because for technical reasons.
Probab=90.27 E-value=0.17 Score=63.14 Aligned_cols=36 Identities=22% Similarity=0.201 Sum_probs=24.3
Q ss_pred ECCCCcCCccCchhhcCCCCCCEEeccCCcCeecCC
Q 005038 591 DLSNNKLNGKIPHQLVELKTLEVFSVAYNNLSGEIP 626 (717)
Q Consensus 591 ~L~~N~i~~~~p~~~~~l~~L~~L~l~~N~l~~~~p 626 (717)
||++|+|+.+.+..|..+++|+.|+|++|++.|.+.
T Consensus 1 DLSnN~LstLp~g~F~~L~sL~~LdLsgNPw~CDC~ 36 (2740)
T TIGR00864 1 DISNNKISTIEEGICANLCNLSEIDLSGNPFECDCG 36 (2740)
T ss_pred CCCCCcCCccChHHhccCCCceEEEeeCCccccccc
Confidence 466777775555666677777777777777776543
No 80
>KOG0473 consensus Leucine-rich repeat protein [Function unknown]
Probab=89.32 E-value=0.011 Score=54.22 Aligned_cols=84 Identities=19% Similarity=0.250 Sum_probs=71.8
Q ss_pred ccccceeeCCCCccCCCCcccccCCccCCeEeCCCcccCCCCCcCCCCCCCCCEEECCCCcCCccCchhhcCCCCCCEEe
Q 005038 536 LSLLSGLDLSCNKLIGHIPPQIGNLTRIQTLNLSHNNLTGSIPSTFSNLKHVESLDLSNNKLNGKIPHQLVELKTLEVFS 615 (717)
Q Consensus 536 l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~N~i~~~~p~~~~~l~~L~~L~ 615 (717)
....+.||++.|++. .....|+-++.|..|+++.|.+. ..|..++++..+..+++..|..+ ..|.++...+.+++++
T Consensus 41 ~kr~tvld~~s~r~v-n~~~n~s~~t~~~rl~~sknq~~-~~~~d~~q~~e~~~~~~~~n~~~-~~p~s~~k~~~~k~~e 117 (326)
T KOG0473|consen 41 FKRVTVLDLSSNRLV-NLGKNFSILTRLVRLDLSKNQIK-FLPKDAKQQRETVNAASHKNNHS-QQPKSQKKEPHPKKNE 117 (326)
T ss_pred cceeeeehhhhhHHH-hhccchHHHHHHHHHhccHhhHh-hChhhHHHHHHHHHHHhhccchh-hCCccccccCCcchhh
Confidence 346788999999887 34456777888999999999998 88888999999999999999887 7888999999999999
Q ss_pred ccCCcCe
Q 005038 616 VAYNNLS 622 (717)
Q Consensus 616 l~~N~l~ 622 (717)
+-+|++.
T Consensus 118 ~k~~~~~ 124 (326)
T KOG0473|consen 118 QKKTEFF 124 (326)
T ss_pred hccCcch
Confidence 9999865
No 81
>KOG4308 consensus LRR-containing protein [Function unknown]
Probab=87.96 E-value=0.0038 Score=66.24 Aligned_cols=87 Identities=22% Similarity=0.236 Sum_probs=38.3
Q ss_pred CCCCCeEECcCCcCcccC----cccccCCCC-CCEEEccCCcCcCc----CCcccCCC-CCCCEEEccCCcccCCc----
Q 005038 291 LTNLQWLQLEGNRFVGEI----PQSLSKCSS-LEGLYLNNNSLLGK----IPRWLGNL-TRLQYIIMPNNHLEGPI---- 356 (717)
Q Consensus 291 l~~L~~L~L~~n~l~~~~----~~~~~~l~~-L~~L~L~~n~~~~~----~~~~~~~l-~~L~~L~l~~n~~~~~~---- 356 (717)
..++++|++++|.++... ...+...+. +..+++..|.+.+. ....+..+ ..++.++++.|.+.+..
T Consensus 203 ~~~le~L~L~~~~~t~~~c~~l~~~l~~~~~~~~el~l~~n~l~d~g~~~L~~~l~~~~~~l~~l~l~~nsi~~~~~~~L 282 (478)
T KOG4308|consen 203 LSSLETLKLSRCGVTSSSCALLDEVLASGESLLRELDLASNKLGDVGVEKLLPCLSVLSETLRVLDLSRNSITEKGVRDL 282 (478)
T ss_pred cccHHHHhhhhcCcChHHHHHHHHHHhccchhhHHHHHHhcCcchHHHHHHHHHhcccchhhhhhhhhcCCccccchHHH
Confidence 445555555555544211 112223333 44455555555432 11222233 44555555555554322
Q ss_pred ccccCCCCCCCEEEccCCcCc
Q 005038 357 PVEFCQLDSLQILDISDNNIS 377 (717)
Q Consensus 357 ~~~~~~l~~L~~L~l~~n~~~ 377 (717)
...+..++.++++.++.|.+.
T Consensus 283 ~~~l~~~~~l~~l~l~~n~l~ 303 (478)
T KOG4308|consen 283 AEVLVSCRQLEELSLSNNPLT 303 (478)
T ss_pred HHHHhhhHHHHHhhcccCccc
Confidence 222334445555555555543
No 82
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=81.16 E-value=0.16 Score=45.88 Aligned_cols=32 Identities=13% Similarity=0.104 Sum_probs=13.7
Q ss_pred cEEECCCCCCCccCCccccCCCCCCEEEccCC
Q 005038 222 YVFNNSMNALDGSIPSSFGNMKFLQILDLSNN 253 (717)
Q Consensus 222 ~~L~l~~n~~~~~~~~~l~~l~~L~~L~Ls~n 253 (717)
+.++-++..|...--+.+.+++.++.|.+.++
T Consensus 104 eaVDAsds~I~~eGle~L~~l~~i~~l~l~~c 135 (221)
T KOG3864|consen 104 EAVDASDSSIMYEGLEHLRDLRSIKSLSLANC 135 (221)
T ss_pred EEEecCCchHHHHHHHHHhccchhhhheeccc
Confidence 33444444333332333444455555555544
No 83
>PF13516 LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1DFJ_I 2BNH_A 3VQ1_A 3VQ2_A 2Z64_A 2OMX_A ....
Probab=80.98 E-value=0.59 Score=26.23 Aligned_cols=14 Identities=29% Similarity=0.430 Sum_probs=5.4
Q ss_pred CCCcEEEcCCCccc
Q 005038 436 SQLSHLILGHNNLE 449 (717)
Q Consensus 436 ~~L~~L~L~~n~l~ 449 (717)
++|++|++++|+++
T Consensus 2 ~~L~~L~l~~n~i~ 15 (24)
T PF13516_consen 2 PNLETLDLSNNQIT 15 (24)
T ss_dssp TT-SEEE-TSSBEH
T ss_pred CCCCEEEccCCcCC
Confidence 34444444444444
No 84
>KOG4308 consensus LRR-containing protein [Function unknown]
Probab=80.87 E-value=0.028 Score=59.81 Aligned_cols=92 Identities=26% Similarity=0.238 Sum_probs=57.3
Q ss_pred ccCCCCCCEEEccCCccccccchh---hhhCCCC-CCEEEccCcccCccC----cccccCC-CCCCeEECcCCcCcccCc
Q 005038 239 FGNMKFLQILDLSNNHLTGEIPEH---LAVGCVN-LQFLALSNNNLQGHL----FSRNFNL-TNLQWLQLEGNRFVGEIP 309 (717)
Q Consensus 239 l~~l~~L~~L~Ls~n~l~~~~~~~---~~~~~~~-L~~L~L~~n~i~~~~----~~~~~~l-~~L~~L~L~~n~l~~~~~ 309 (717)
+....++++|++++|.++...-.. .....+. +..+++.+|.+.+.. ...+..+ ..+++++++.|.++....
T Consensus 200 ~~~~~~le~L~L~~~~~t~~~c~~l~~~l~~~~~~~~el~l~~n~l~d~g~~~L~~~l~~~~~~l~~l~l~~nsi~~~~~ 279 (478)
T KOG4308|consen 200 ASPLSSLETLKLSRCGVTSSSCALLDEVLASGESLLRELDLASNKLGDVGVEKLLPCLSVLSETLRVLDLSRNSITEKGV 279 (478)
T ss_pred hcccccHHHHhhhhcCcChHHHHHHHHHHhccchhhHHHHHHhcCcchHHHHHHHHHhcccchhhhhhhhhcCCccccch
Confidence 345677788888887766221111 1112233 666888888776431 1223334 667888999988876433
Q ss_pred ----ccccCCCCCCEEEccCCcCcC
Q 005038 310 ----QSLSKCSSLEGLYLNNNSLLG 330 (717)
Q Consensus 310 ----~~~~~l~~L~~L~L~~n~~~~ 330 (717)
..+..++.++++.+++|.+.+
T Consensus 280 ~~L~~~l~~~~~l~~l~l~~n~l~~ 304 (478)
T KOG4308|consen 280 RDLAEVLVSCRQLEELSLSNNPLTD 304 (478)
T ss_pred HHHHHHHhhhHHHHHhhcccCcccc
Confidence 345667789999999988764
No 85
>smart00365 LRR_SD22 Leucine-rich repeat, SDS22-like subfamily.
Probab=80.36 E-value=1.6 Score=25.18 Aligned_cols=14 Identities=43% Similarity=0.624 Sum_probs=7.6
Q ss_pred CCCCEEeCCCCCCc
Q 005038 43 TSLRILDVSSNQLT 56 (717)
Q Consensus 43 ~~L~~L~Ls~n~i~ 56 (717)
.+|+.|+|++|+|+
T Consensus 2 ~~L~~L~L~~NkI~ 15 (26)
T smart00365 2 TNLEELDLSQNKIK 15 (26)
T ss_pred CccCEEECCCCccc
Confidence 45555555555554
No 86
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=79.95 E-value=0.17 Score=45.81 Aligned_cols=81 Identities=12% Similarity=0.070 Sum_probs=36.3
Q ss_pred CCeeeCCCCCCCCCcchhccCCCCCCEEeCCCCCCcccCCccccC-CCCCCCEEECCCCcccCcCCcccccCCCCCCEEE
Q 005038 21 LQELYIASNDLRGSLPWCMANMTSLRILDVSSNQLTGSISSSPLV-HLTSIEELMLSNNYFQIPISLEPLFNYSRLKIFN 99 (717)
Q Consensus 21 L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~i~~~~~~-~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~ 99 (717)
++.+|-++..|..+--+.+.+++.++.|.+.+|.-.+.-.-.-++ -.++|+.|++++|.--.......+..+++|+.|.
T Consensus 103 IeaVDAsds~I~~eGle~L~~l~~i~~l~l~~ck~~dD~~L~~l~~~~~~L~~L~lsgC~rIT~~GL~~L~~lknLr~L~ 182 (221)
T KOG3864|consen 103 IEAVDASDSSIMYEGLEHLRDLRSIKSLSLANCKYFDDWCLERLGGLAPSLQDLDLSGCPRITDGGLACLLKLKNLRRLH 182 (221)
T ss_pred EEEEecCCchHHHHHHHHHhccchhhhheeccccchhhHHHHHhcccccchheeeccCCCeechhHHHHHHHhhhhHHHH
Confidence 445666666665555555555566666655555322110000011 1345555666555421122223344444444444
Q ss_pred cc
Q 005038 100 AE 101 (717)
Q Consensus 100 l~ 101 (717)
+.
T Consensus 183 l~ 184 (221)
T KOG3864|consen 183 LY 184 (221)
T ss_pred hc
Confidence 43
No 87
>KOG4242 consensus Predicted myosin-I-binding protein [Cell motility]
Probab=74.41 E-value=19 Score=37.58 Aligned_cols=38 Identities=21% Similarity=0.015 Sum_probs=19.1
Q ss_pred CCCEEECCCCcccCcCCccc--ccCCCCCCEEEccCCccc
Q 005038 69 SIEELMLSNNYFQIPISLEP--LFNYSRLKIFNAENNEIK 106 (717)
Q Consensus 69 ~L~~L~L~~n~~~~~~~~~~--~~~l~~L~~L~l~~n~l~ 106 (717)
.+.+++++.|.....++... ...-.-++.++.+...++
T Consensus 215 ~lteldls~n~~Kddip~~~n~~a~~~vl~~ld~s~tgir 254 (553)
T KOG4242|consen 215 WLTELDLSTNGGKDDIPRTLNKKAGTLVLFKLDRSTTGIR 254 (553)
T ss_pred cccccccccCCCCccchhHHHHhhhhhhhhcccccccccc
Confidence 36677777776654444211 112224555555554443
No 88
>smart00364 LRR_BAC Leucine-rich repeats, bacterial type.
Probab=71.11 E-value=3 Score=23.95 Aligned_cols=13 Identities=38% Similarity=0.687 Sum_probs=7.3
Q ss_pred CCCEEECCCCcCC
Q 005038 586 HVESLDLSNNKLN 598 (717)
Q Consensus 586 ~L~~L~L~~N~i~ 598 (717)
+|+.|++++|+++
T Consensus 3 ~L~~L~vs~N~Lt 15 (26)
T smart00364 3 SLKELNVSNNQLT 15 (26)
T ss_pred ccceeecCCCccc
Confidence 4555555555555
No 89
>TIGR00864 PCC polycystin cation channel protein. Note: this model has been restricted to the amino half because for technical reasons.
Probab=68.87 E-value=2.2 Score=54.04 Aligned_cols=58 Identities=19% Similarity=0.317 Sum_probs=48.6
Q ss_pred eccCCcCeecCCCCCcccCCCCcccccCCcCCCCCCCC-------------------CCCCCCCCCCCCCCCCCCCc
Q 005038 615 SVAYNNLSGEIPEWKAQFATFNESSYEGNTFLCGLPLP-------------------ICRSPATMPEASIGNEQDDN 672 (717)
Q Consensus 615 ~l~~N~l~~~~p~~~~~~~~l~~~~~~~n~~~c~~~l~-------------------~C~~~~~~~~~~~~~~~~~~ 672 (717)
||++|+|+...+..|..+.+++.+.+.+|||.|+|.+. .|..|..++++++.+...++
T Consensus 1 DLSnN~LstLp~g~F~~L~sL~~LdLsgNPw~CDC~L~WL~~WL~~~~v~v~~~~~i~CasP~~LrG~~L~~l~~~d 77 (2740)
T TIGR00864 1 DISNNKISTIEEGICANLCNLSEIDLSGNPFECDCGLARLPRWAEEKGVKVRQPEAALCAGPGALAGQPLLGIPLLD 77 (2740)
T ss_pred CCCCCcCCccChHHhccCCCceEEEeeCCccccccccHHHHHHHHhcCccccCCcccCCCCChHHCCCCcccCCccc
Confidence 68999999777777788889999999999999999762 39999999998887766554
No 90
>KOG4242 consensus Predicted myosin-I-binding protein [Cell motility]
Probab=68.38 E-value=29 Score=36.29 Aligned_cols=107 Identities=24% Similarity=0.216 Sum_probs=47.9
Q ss_pred CCcCEEEccCCcCCccCCccccccCCCCcEEECCCCCCCccCCccc---cCCCCCCEEEccCCccccccchhhhhC--CC
Q 005038 194 KRLRQLDVSNNNIRGHIPVKIGDVLPSLYVFNNSMNALDGSIPSSF---GNMKFLQILDLSNNHLTGEIPEHLAVG--CV 268 (717)
Q Consensus 194 ~~L~~L~ls~n~i~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l---~~l~~L~~L~Ls~n~l~~~~~~~~~~~--~~ 268 (717)
+.+++++++.|.+....|..+...- --+.++.|..+...-..+ ..-..+++++++.|...+.+|...... -.
T Consensus 165 pr~r~~dls~npi~dkvpihl~~p~---~pl~lr~c~lsskfis~l~~qsg~~~lteldls~n~~Kddip~~~n~~a~~~ 241 (553)
T KOG4242|consen 165 PRARQHDLSPNPIGDKVPIHLPQPG---NPLSLRVCELSSKFISKLLIQSGRLWLTELDLSTNGGKDDIPRTLNKKAGTL 241 (553)
T ss_pred chhhhhccCCCcccccCCccccCCC---CccchhhhhhhhhHHHHhhhhhccccccccccccCCCCccchhHHHHhhhhh
Confidence 3456666666666555554433211 013333333321110000 011245677777776666666544321 12
Q ss_pred CCCEEEccCcccC---ccCcccccCCCCCCeEECcCCc
Q 005038 269 NLQFLALSNNNLQ---GHLFSRNFNLTNLQWLQLEGNR 303 (717)
Q Consensus 269 ~L~~L~L~~n~i~---~~~~~~~~~l~~L~~L~L~~n~ 303 (717)
-++.++.+...+. ...+..++..++++..+++.|.
T Consensus 242 vl~~ld~s~tgirlD~l~~~l~~g~~tkl~~~kls~ng 279 (553)
T KOG4242|consen 242 VLFKLDRSTTGIRLDLLTSPLAAGRTTKLTFGKLSRNG 279 (553)
T ss_pred hhhcccccccccchhhcccccccccccccchhhhccCC
Confidence 3555555554443 1112223344556666665553
No 91
>smart00368 LRR_RI Leucine rich repeat, ribonuclease inhibitor type.
Probab=64.39 E-value=6.1 Score=23.16 Aligned_cols=14 Identities=57% Similarity=0.755 Sum_probs=9.3
Q ss_pred CCCCEEECCCCcCC
Q 005038 585 KHVESLDLSNNKLN 598 (717)
Q Consensus 585 ~~L~~L~L~~N~i~ 598 (717)
++|++|||++|.+.
T Consensus 2 ~~L~~LdL~~N~i~ 15 (28)
T smart00368 2 PSLRELDLSNNKLG 15 (28)
T ss_pred CccCEEECCCCCCC
Confidence 45667777777765
No 92
>KOG3763 consensus mRNA export factor TAP/MEX67 [RNA processing and modification]
Probab=55.47 E-value=5.5 Score=42.18 Aligned_cols=62 Identities=27% Similarity=0.300 Sum_probs=37.3
Q ss_pred ccccceeeCCCCccCCCCc--ccccCCccCCeEeCCCc--ccCCCCCcCCCC--CCCCCEEECCCCcCCc
Q 005038 536 LSLLSGLDLSCNKLIGHIP--PQIGNLTRIQTLNLSHN--NLTGSIPSTFSN--LKHVESLDLSNNKLNG 599 (717)
Q Consensus 536 l~~L~~L~L~~n~l~~~~~--~~l~~l~~L~~L~Ls~n--~l~~~~p~~~~~--l~~L~~L~L~~N~i~~ 599 (717)
.+.+..+.|++|++..... .--...++|++|+|++| .+... ..+.. ...|++|-+.+|++..
T Consensus 217 ~p~i~sl~lsnNrL~~Ld~~sslsq~apklk~L~LS~N~~~~~~~--~el~K~k~l~Leel~l~GNPlc~ 284 (585)
T KOG3763|consen 217 FPEILSLSLSNNRLYHLDALSSLSQIAPKLKTLDLSHNHSKISSE--SELDKLKGLPLEELVLEGNPLCT 284 (585)
T ss_pred CcceeeeecccchhhchhhhhHHHHhcchhheeecccchhhhcch--hhhhhhcCCCHHHeeecCCcccc
Confidence 4567778888888763321 11223467888888888 33321 22222 2357888888888764
No 93
>PF01102 Glycophorin_A: Glycophorin A; InterPro: IPR001195 Proteins in this group are responsible for the molecular basis of the blood group antigens, surface markers on the outside of the red blood cell membrane. Most of these markers are proteins, but some are carbohydrates attached to lipids or proteins [Reid M.E., Lomas-Francis C. The Blood Group Antigen FactsBook Academic Press, London / San Diego, (1997)]. Glycophorin A (PAS-2) and glycophorin B (PAS-3) belong to the MNS blood group system and are associated with antigens that include M/N, S/s, U, He, Mi(a), M(c), Vw, Mur, M(g), Vr, M(e), Mt(a), St(a), Ri(a), Cl(a), Ny(a), Hut, Hil, M(v), Far, Mit, Dantu, Hop, Nob, En(a), ENKT, amongst others. Glycophorin A is the major sialoglycoprotein of the erythrocyte membrane []. Structurally, glycophorin A consists of an N-terminal extracellular domain, heavily glycosylated on serine and threonine residues, followed by a transmembrane region and a C-terminal cytoplasmic domain. Other glycophorins in this entry such as Glycophorin B and Glycophorin E represent minor sialoglycoproteins in the erythrocyte membrane.; GO: 0016021 integral to membrane; PDB: 2KPF_B 1AFO_B 2KPE_A.
Probab=48.29 E-value=9.3 Score=31.97 Aligned_cols=9 Identities=22% Similarity=0.073 Sum_probs=3.5
Q ss_pred HHHHHHhhh
Q 005038 678 SFFITFTTS 686 (717)
Q Consensus 678 ~~~~~~~~~ 686 (717)
..+|++++.
T Consensus 66 i~~Ii~gv~ 74 (122)
T PF01102_consen 66 IIGIIFGVM 74 (122)
T ss_dssp HHHHHHHHH
T ss_pred eeehhHHHH
Confidence 334444333
No 94
>PF02439 Adeno_E3_CR2: Adenovirus E3 region protein CR2; InterPro: IPR003470 Early region 3 (E3) of human adenoviruses (Ads) codes for proteins that appear to control viral interactions with the host []. This region called CR1 (conserved region 1) [] is found three times in Human adenovirus 19 (a subgroup D adenovirus) 49 kDa protein in the E3 region. CR1 is also found in the 20.1 Kd protein of subgroup B adenoviruses. The function of this 80 amino acid region is unknown. This region is probably a divergent immunoglobulin domain.
Probab=47.67 E-value=20 Score=22.67 Aligned_cols=12 Identities=17% Similarity=0.451 Sum_probs=4.8
Q ss_pred HHHhhhhhHhhH
Q 005038 681 ITFTTSYVIVIF 692 (717)
Q Consensus 681 ~~~~~~~~~~~~ 692 (717)
+++.++++++++
T Consensus 10 v~V~vg~~iiii 21 (38)
T PF02439_consen 10 VAVVVGMAIIII 21 (38)
T ss_pred HHHHHHHHHHHH
Confidence 333444444333
No 95
>PF08693 SKG6: Transmembrane alpha-helix domain; InterPro: IPR014805 SKG6 and AXL2 are membrane proteins that show polarised intracellular localisation [, ]. This entry represents the highly conserved transmembrane alpha-helical domain found in these proteins [, ]. The full-length AXL2 protein has a negative regulatory function in cytokinesis [].
Probab=44.78 E-value=4.1 Score=26.17 Aligned_cols=13 Identities=8% Similarity=0.148 Sum_probs=5.2
Q ss_pred HHhhhhhHhhHhh
Q 005038 682 TFTTSYVIVIFGI 694 (717)
Q Consensus 682 ~~~~~~~~~~~~~ 694 (717)
++++.++++++++
T Consensus 16 ~VvVPV~vI~~vl 28 (40)
T PF08693_consen 16 GVVVPVGVIIIVL 28 (40)
T ss_pred EEEechHHHHHHH
Confidence 3344444433333
No 96
>PF15102 TMEM154: TMEM154 protein family
Probab=43.33 E-value=7.9 Score=33.20 Aligned_cols=22 Identities=14% Similarity=0.247 Sum_probs=10.3
Q ss_pred hhhhHhhHhhhhhhheeccccc
Q 005038 685 TSYVIVIFGIVIVLYVNSYWRR 706 (717)
Q Consensus 685 ~~~~~~~~~~~~~~~~~~~~~~ 706 (717)
+.++++++++++++++++|||.
T Consensus 66 VLLvlLLl~vV~lv~~~kRkr~ 87 (146)
T PF15102_consen 66 VLLVLLLLSVVCLVIYYKRKRT 87 (146)
T ss_pred HHHHHHHHHHHHheeEEeeccc
Confidence 3333444444444555555554
No 97
>smart00367 LRR_CC Leucine-rich repeat - CC (cysteine-containing) subfamily.
Probab=41.46 E-value=20 Score=20.38 Aligned_cols=11 Identities=45% Similarity=0.555 Sum_probs=6.6
Q ss_pred CCCCEEeCCCC
Q 005038 43 TSLRILDVSSN 53 (717)
Q Consensus 43 ~~L~~L~Ls~n 53 (717)
++|++|+|++|
T Consensus 2 ~~L~~L~l~~C 12 (26)
T smart00367 2 PNLRELDLSGC 12 (26)
T ss_pred CCCCEeCCCCC
Confidence 45666666655
No 98
>KOG3763 consensus mRNA export factor TAP/MEX67 [RNA processing and modification]
Probab=40.07 E-value=15 Score=39.18 Aligned_cols=63 Identities=21% Similarity=0.156 Sum_probs=33.3
Q ss_pred CCCCCCEEeCCCCCCcccCCcc--ccCCCCCCCEEECCCC--cccCcCCccccc--CCCCCCEEEccCCcccc
Q 005038 41 NMTSLRILDVSSNQLTGSISSS--PLVHLTSIEELMLSNN--YFQIPISLEPLF--NYSRLKIFNAENNEIKA 107 (717)
Q Consensus 41 ~l~~L~~L~Ls~n~i~~~i~~~--~~~~l~~L~~L~L~~n--~~~~~~~~~~~~--~l~~L~~L~l~~n~l~~ 107 (717)
+.+.+..++|++|++. .+... .-..-++|++|+|++| .+... .++. +...|++|-+.+|++..
T Consensus 216 n~p~i~sl~lsnNrL~-~Ld~~sslsq~apklk~L~LS~N~~~~~~~---~el~K~k~l~Leel~l~GNPlc~ 284 (585)
T KOG3763|consen 216 NFPEILSLSLSNNRLY-HLDALSSLSQIAPKLKTLDLSHNHSKISSE---SELDKLKGLPLEELVLEGNPLCT 284 (585)
T ss_pred CCcceeeeecccchhh-chhhhhHHHHhcchhheeecccchhhhcch---hhhhhhcCCCHHHeeecCCcccc
Confidence 4556666677777665 43320 1123466777777777 22211 1122 23356777777777654
No 99
>PTZ00382 Variant-specific surface protein (VSP); Provisional
Probab=37.90 E-value=7.2 Score=31.18 Aligned_cols=17 Identities=29% Similarity=0.190 Sum_probs=6.6
Q ss_pred hhhhHhhHhhhhhhhee
Q 005038 685 TSYVIVIFGIVIVLYVN 701 (717)
Q Consensus 685 ~~~~~~~~~~~~~~~~~ 701 (717)
+++++++.+++.+++|+
T Consensus 73 vg~~~~v~~lv~~l~w~ 89 (96)
T PTZ00382 73 VAVVAVVGGLVGFLCWW 89 (96)
T ss_pred eehhhHHHHHHHHHhhe
Confidence 33333333344444433
No 100
>PF15050 SCIMP: SCIMP protein
Probab=35.89 E-value=18 Score=29.51 Aligned_cols=26 Identities=23% Similarity=0.626 Sum_probs=11.1
Q ss_pred HHHHHhhhhhHhhHhhhhhhheeccc
Q 005038 679 FFITFTTSYVIVIFGIVIVLYVNSYW 704 (717)
Q Consensus 679 ~~~~~~~~~~~~~~~~~~~~~~~~~~ 704 (717)
|+++++++++++-.++..++|+.++|
T Consensus 8 FWiiLAVaII~vS~~lglIlyCvcR~ 33 (133)
T PF15050_consen 8 FWIILAVAIILVSVVLGLILYCVCRW 33 (133)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444333444444444444
No 101
>PF04478 Mid2: Mid2 like cell wall stress sensor; InterPro: IPR007567 This family represents a region near the C terminus of Mid2, which contains a transmembrane region. The remainder of the protein sequence is serine-rich and of low complexity, and is therefore impossible to align accurately. Mid2 is thought to act as a mechanosensor of cell wall stress. The C-terminal cytoplasmic region of Mid2 is known to interact with Rom2, a guanine nucleotide exchange factor (GEF) for Rho1, which is part of the cell wall integrity signalling pathway [].
Probab=33.97 E-value=11 Score=32.48 Aligned_cols=6 Identities=17% Similarity=0.191 Sum_probs=2.2
Q ss_pred HHHhhh
Q 005038 681 ITFTTS 686 (717)
Q Consensus 681 ~~~~~~ 686 (717)
+++++|
T Consensus 52 IGvVVG 57 (154)
T PF04478_consen 52 IGVVVG 57 (154)
T ss_pred EEEEec
Confidence 333333
No 102
>PF12191 stn_TNFRSF12A: Tumour necrosis factor receptor stn_TNFRSF12A_TNFR domain; InterPro: IPR022316 The tumour necrosis factor (TNF) receptor (TNFR) superfamily comprises more than 20 type-I transmembrane proteins. Family members are defined based on similarity in their extracellular domain - a region that contains many cysteine residues arranged in a specific repetitive pattern []. The cysteines allow formation of an extended rod-like structure, responsible for ligand binding []. Upon receptor activation, different intracellular signalling complexes are assembled for different members of the TNFR superfamily, depending on their intracellular domains and sequences []. Activation of TNFRs can therefore induce a range of disparate effects, including cell proliferation, differentiation, survival, or apoptotic cell death, depending upon the receptor involved []. TNFRs are widely distributed and play important roles in many crucial biological processes, such as lymphoid and neuronal development, innate and adaptive immunity, and maintenance of cellular homeostasis []. Drugs that manipulate their signalling have potential roles in the prevention and treatment of many diseases, such as viral infections, coronary heart disease, transplant rejection, and immune disease []. TNF receptor 12 (also known as TWEAK receptor, and fibroblast growth factor-inducible-14 (Fn14)) has been implicated in endothelial cell growth and migration []. The receptor may also play a role in cell-matrix interactions [].; PDB: 2KN0_A 2RPJ_A 2KMZ_A 2EQP_A.
Probab=31.69 E-value=25 Score=29.18 Aligned_cols=22 Identities=23% Similarity=0.145 Sum_probs=0.0
Q ss_pred HhhHhhhhhhheecccccceee
Q 005038 689 IVIFGIVIVLYVNSYWRRRWFY 710 (717)
Q Consensus 689 ~~~~~~~~~~~~~~~~~~~~~~ 710 (717)
+++.++.+++++++++|+..|.
T Consensus 90 lVl~llsg~lv~rrcrrr~~~t 111 (129)
T PF12191_consen 90 LVLALLSGFLVWRRCRRREKFT 111 (129)
T ss_dssp ----------------------
T ss_pred HHHHHHHHHHHHhhhhccccCC
Confidence 3344444566666666666553
No 103
>PHA03099 epidermal growth factor-like protein (EGF-like protein); Provisional
Probab=29.52 E-value=60 Score=27.08 Aligned_cols=31 Identities=19% Similarity=0.153 Sum_probs=16.7
Q ss_pred hhhhHhhHhhhhhhheecccccceeeeehhh
Q 005038 685 TSYVIVIFGIVIVLYVNSYWRRRWFYFVEMW 715 (717)
Q Consensus 685 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 715 (717)
+++++++++..+.+++.+|+|++..-+-+++
T Consensus 107 l~il~~i~is~~~~~~yr~~r~~~~~~~~~~ 137 (139)
T PHA03099 107 VLVLVGIIITCCLLSVYRFTRRTKLPLQDMV 137 (139)
T ss_pred HHHHHHHHHHHHHHhhheeeecccCchhhcc
Confidence 3334444445555566666666665554443
No 104
>PF07204 Orthoreo_P10: Orthoreovirus membrane fusion protein p10; InterPro: IPR009854 This family consists of several Orthoreovirus membrane fusion protein p10 sequences. p10 is thought to be a multifunctional protein that plays a key role in virus-host interaction [].
Probab=26.80 E-value=37 Score=26.49 Aligned_cols=29 Identities=7% Similarity=0.143 Sum_probs=15.4
Q ss_pred hHHHHHHhhhhhHhhHhhhhhhheecccc
Q 005038 677 DSFFITFTTSYVIVIFGIVIVLYVNSYWR 705 (717)
Q Consensus 677 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 705 (717)
.|.+++.+.+++++++++..+++.+.+|+
T Consensus 41 yWpyLA~GGG~iLilIii~Lv~CC~~K~K 69 (98)
T PF07204_consen 41 YWPYLAAGGGLILILIIIALVCCCRAKHK 69 (98)
T ss_pred hhHHhhccchhhhHHHHHHHHHHhhhhhh
Confidence 35566666666655555544444444443
No 105
>TIGR01478 STEVOR variant surface antigen, stevor family. This model represents the stevor branch of the rifin/stevor family (pfam02009) of predicted variant surface antigens as found in Plasmodium falciparum. This model is based on a set of stevor sequences kindly provided by Matt Berriman from the Sanger Center. This is a global model and assesses a penalty for incomplete sequence. Additional fragmentary sequences may be found with the fragment model and a cutoff of 8 bits.
Probab=24.77 E-value=33 Score=33.14 Aligned_cols=15 Identities=33% Similarity=0.654 Sum_probs=6.7
Q ss_pred hHhhhhhhheecccc
Q 005038 691 IFGIVIVLYVNSYWR 705 (717)
Q Consensus 691 ~~~~~~~~~~~~~~~ 705 (717)
++++++++|+|.++|
T Consensus 271 l~vvliiLYiWlyrr 285 (295)
T TIGR01478 271 LTVVLIILYIWLYRR 285 (295)
T ss_pred HHHHHHHHHHHHHHh
Confidence 334444455544433
No 106
>PTZ00370 STEVOR; Provisional
Probab=24.39 E-value=34 Score=33.14 Aligned_cols=15 Identities=33% Similarity=0.651 Sum_probs=6.7
Q ss_pred hHhhhhhhheecccc
Q 005038 691 IFGIVIVLYVNSYWR 705 (717)
Q Consensus 691 ~~~~~~~~~~~~~~~ 705 (717)
++++++++|+|.++|
T Consensus 267 l~vvliilYiwlyrr 281 (296)
T PTZ00370 267 LAVVLIILYIWLYRR 281 (296)
T ss_pred HHHHHHHHHHHHHHh
Confidence 334444455544433
No 107
>PF02009 Rifin_STEVOR: Rifin/stevor family; InterPro: IPR002858 Malaria is still a major cause of mortality in many areas of the world. Plasmodium falciparum causes the most severe human form of the disease and is responsible for most fatalities. Severe cases of malaria can occur when the parasite invades and then proliferates within red blood cell erythrocytes. The parasite produces many variant antigenic proteins, encoded by multigene families, which are present on the surface of the infected erythrocyte and play important roles in virulence. A crucial survival mechanism for the malaria parasite is its ability to evade the immune response by switching these variant surface antigens. The high virulence of P. falciparum relative to other malarial parasites is in large part due to the fact that in this organism many of these surface antigens mediate the binding of infected erythrocytes to the vascular endothelium (cytoadherence) and non-infected erythrocytes (rosetting). This can lead to the accumulation of infected cells in the vasculature of a variety of organs, blocking the blood flow and reducing the oxygen supply. Clinical symptoms of severe infection can include fever, progressive anaemia, multi-organ dysfunction and coma. For more information see []. Several multicopy gene families have been described in Plasmodium falciparum, including the stevor family of subtelomeric open reading frames and the rif interspersed repetitive elements. Both families contain three predicted transmembrane segments. It has been proposed that stevor and rif are members of a larger superfamily that code for variant surface antigens [].
Probab=21.56 E-value=47 Score=32.99 Aligned_cols=10 Identities=20% Similarity=0.281 Sum_probs=3.6
Q ss_pred hhhhhhheec
Q 005038 693 GIVIVLYVNS 702 (717)
Q Consensus 693 ~~~~~~~~~~ 702 (717)
+++++.++.|
T Consensus 271 IMvIIYLILR 280 (299)
T PF02009_consen 271 IMVIIYLILR 280 (299)
T ss_pred HHHHHHHHHH
Confidence 3333333333
No 108
>PF08374 Protocadherin: Protocadherin; InterPro: IPR013585 The structure of protocadherins is similar to that of classic cadherins (IPR002126 from INTERPRO), but they also have some unique features associated with the cytoplasmic domains. They are expressed in a variety of organisms and are found in high concentrations in the brain where they seem to be localised mainly at cell-cell contact sites. Their expression seems to be developmentally regulated [].
Probab=21.43 E-value=20 Score=33.00 Aligned_cols=24 Identities=29% Similarity=0.455 Sum_probs=11.7
Q ss_pred HHHHHHhhhhhHhhHhhhhhhhee
Q 005038 678 SFFITFTTSYVIVIFGIVIVLYVN 701 (717)
Q Consensus 678 ~~~~~~~~~~~~~~~~~~~~~~~~ 701 (717)
.++++++.|+++++++++++++++
T Consensus 38 ~I~iaiVAG~~tVILVI~i~v~vR 61 (221)
T PF08374_consen 38 KIMIAIVAGIMTVILVIFIVVLVR 61 (221)
T ss_pred eeeeeeecchhhhHHHHHHHHHHH
Confidence 344555555555554444444443
No 109
>PF14991 MLANA: Protein melan-A; PDB: 2GTZ_F 2GT9_F 3MRO_P 2GUO_C 3MRQ_P 2GTW_C 3L6F_C 3MRP_P.
Probab=21.11 E-value=27 Score=28.34 Aligned_cols=17 Identities=6% Similarity=-0.081 Sum_probs=0.0
Q ss_pred hhheecccccceeeeeh
Q 005038 697 VLYVNSYWRRRWFYFVE 713 (717)
Q Consensus 697 ~~~~~~~~~~~~~~~~~ 713 (717)
+-+|++++|..|.-+.+
T Consensus 42 iGCWYckRRSGYk~L~~ 58 (118)
T PF14991_consen 42 IGCWYCKRRSGYKTLRD 58 (118)
T ss_dssp -----------------
T ss_pred Hhheeeeecchhhhhhh
Confidence 34444555556655543
Done!