Query 005038
Match_columns 717
No_of_seqs 578 out of 5006
Neff 10.5
Searched_HMMs 29240
Date Mon Mar 25 13:29:51 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/005038.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/005038hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3rgz_A Protein brassinosteroid 100.0 6.2E-74 2.1E-78 655.6 47.9 642 13-667 94-761 (768)
2 3rgz_A Protein brassinosteroid 100.0 5.1E-66 1.7E-70 590.3 42.6 636 1-648 57-719 (768)
3 1ziw_A TOLL-like receptor 3; i 100.0 7.8E-62 2.7E-66 551.6 47.9 609 2-674 12-671 (680)
4 1ziw_A TOLL-like receptor 3; i 100.0 3.7E-58 1.3E-62 521.4 50.6 596 1-651 32-655 (680)
5 3j0a_A TOLL-like receptor 5; m 100.0 2.5E-57 8.7E-62 523.8 42.6 582 2-674 12-608 (844)
6 3t6q_A CD180 antigen; protein- 100.0 6.6E-55 2.2E-59 488.2 39.3 566 5-669 23-602 (606)
7 3t6q_A CD180 antigen; protein- 100.0 5.3E-53 1.8E-57 472.7 45.0 511 1-602 40-564 (606)
8 3vq2_A TLR4, TOLL-like recepto 100.0 7.1E-54 2.4E-58 479.8 37.9 565 2-672 19-603 (606)
9 3j0a_A TOLL-like receptor 5; m 100.0 1E-52 3.4E-57 485.4 44.1 530 22-652 7-566 (844)
10 3vq2_A TLR4, TOLL-like recepto 100.0 2.3E-52 8E-57 467.5 39.6 535 20-652 12-564 (606)
11 2z63_A TOLL-like receptor 4, v 100.0 2E-47 6.7E-52 424.8 36.6 492 19-627 28-536 (570)
12 2z81_A CD282 antigen, TOLL-lik 100.0 2.7E-46 9.1E-51 413.4 34.5 488 2-626 13-514 (549)
13 2z63_A TOLL-like receptor 4, v 100.0 1.2E-45 4.2E-50 410.4 36.5 466 120-651 28-536 (570)
14 2z81_A CD282 antigen, TOLL-lik 100.0 1.2E-45 4.2E-50 408.1 36.0 488 22-650 8-514 (549)
15 4g8a_A TOLL-like receptor 4; l 100.0 4.9E-45 1.7E-49 411.5 39.0 560 6-669 43-622 (635)
16 4eco_A Uncharacterized protein 100.0 4E-46 1.4E-50 415.9 21.4 394 179-650 192-630 (636)
17 2z7x_B TOLL-like receptor 1, v 100.0 7.6E-45 2.6E-49 398.6 25.3 462 22-626 3-485 (520)
18 4eco_A Uncharacterized protein 100.0 1E-45 3.6E-50 412.5 18.3 366 228-649 192-603 (636)
19 4g8a_A TOLL-like receptor 4; l 100.0 9.7E-43 3.3E-47 392.7 40.2 535 22-651 34-585 (635)
20 4ecn_A Leucine-rich repeat pro 100.0 3.8E-44 1.3E-48 405.2 28.6 383 204-650 435-870 (876)
21 2z7x_B TOLL-like receptor 1, v 100.0 5E-43 1.7E-47 384.1 31.8 456 1-602 7-485 (520)
22 4ecn_A Leucine-rich repeat pro 100.0 1.7E-43 5.7E-48 400.1 28.0 395 137-623 440-865 (876)
23 3a79_B TLR6, VLRB.59, TOLL-lik 100.0 1.3E-41 4.5E-46 375.8 25.7 464 16-626 28-514 (562)
24 3a79_B TLR6, VLRB.59, TOLL-lik 100.0 4.8E-40 1.6E-44 363.3 30.4 454 1-602 38-514 (562)
25 3v47_A TOLL-like receptor 5B a 100.0 7E-40 2.4E-44 353.1 30.3 373 197-627 13-413 (455)
26 3v47_A TOLL-like receptor 5B a 100.0 5.1E-39 1.7E-43 346.3 29.1 382 149-602 14-412 (455)
27 1jl5_A Outer protein YOPM; leu 100.0 4.4E-38 1.5E-42 335.3 25.5 302 194-628 111-417 (454)
28 1jl5_A Outer protein YOPM; leu 100.0 4.4E-37 1.5E-41 327.5 29.6 385 145-647 11-410 (454)
29 2id5_A Lingo-1, leucine rich r 100.0 7.5E-37 2.5E-41 331.1 24.6 346 222-650 14-360 (477)
30 2id5_A Lingo-1, leucine rich r 100.0 1.7E-36 5.8E-41 328.3 26.0 350 196-628 13-362 (477)
31 1o6v_A Internalin A; bacterial 100.0 5.2E-35 1.8E-39 314.9 34.5 346 169-624 45-390 (466)
32 1o6v_A Internalin A; bacterial 100.0 1.8E-34 6.2E-39 310.7 35.3 345 144-599 45-389 (466)
33 3bz5_A Internalin-J, INLJ; leu 100.0 1.4E-35 4.7E-40 316.3 25.4 363 134-628 31-393 (457)
34 3o6n_A APL1; leucine-rich repe 100.0 6.2E-35 2.1E-39 307.2 27.9 335 242-650 44-378 (390)
35 3bz5_A Internalin-J, INLJ; leu 100.0 2.4E-34 8.2E-39 306.7 27.9 360 14-482 37-396 (457)
36 3oja_B Anopheles plasmodium-re 100.0 5.2E-34 1.8E-38 316.5 27.9 335 242-650 50-384 (597)
37 1ogq_A PGIP-2, polygalacturona 100.0 1.4E-33 4.9E-38 286.2 20.0 260 316-655 50-313 (313)
38 4fmz_A Internalin; leucine ric 100.0 3.3E-32 1.1E-36 281.8 28.9 304 218-622 43-346 (347)
39 3o6n_A APL1; leucine-rich repe 100.0 1.6E-32 5.5E-37 288.7 24.6 312 267-650 44-356 (390)
40 4fmz_A Internalin; leucine ric 100.0 1.7E-31 5.8E-36 276.5 30.1 308 189-598 39-346 (347)
41 3oja_B Anopheles plasmodium-re 100.0 9.4E-32 3.2E-36 298.4 24.7 311 267-649 50-361 (597)
42 1xku_A Decorin; proteoglycan, 100.0 1.7E-30 5.8E-35 266.6 29.6 291 244-620 32-330 (330)
43 2ft3_A Biglycan; proteoglycan, 100.0 7.3E-31 2.5E-35 269.5 26.1 290 244-620 34-331 (332)
44 1z7x_W Ribonuclease inhibitor; 100.0 5.5E-34 1.9E-38 307.6 -2.1 256 194-449 3-297 (461)
45 1ogq_A PGIP-2, polygalacturona 100.0 2.2E-31 7.7E-36 270.1 16.0 252 293-624 51-306 (313)
46 2ft3_A Biglycan; proteoglycan, 100.0 4.2E-30 1.4E-34 263.8 25.3 288 269-644 34-331 (332)
47 1z7x_W Ribonuclease inhibitor; 100.0 9.9E-34 3.4E-38 305.7 -2.0 391 145-603 3-445 (461)
48 1xku_A Decorin; proteoglycan, 100.0 1.2E-29 4.1E-34 260.3 26.9 267 317-643 53-329 (330)
49 3zyj_A Leucine-rich repeat-con 100.0 2.3E-28 7.8E-33 261.0 24.9 252 293-626 44-296 (440)
50 3zyi_A Leucine-rich repeat-con 100.0 3E-28 1E-32 261.1 24.2 252 293-626 55-307 (452)
51 2z80_A TOLL-like receptor 2, v 100.0 1.2E-28 4E-33 255.4 16.9 208 242-477 30-239 (353)
52 2z66_A Variable lymphocyte rec 100.0 2.6E-28 8.9E-33 247.5 17.8 251 295-626 10-265 (306)
53 2z80_A TOLL-like receptor 2, v 100.0 1.9E-28 6.5E-33 253.8 14.5 279 267-626 30-318 (353)
54 2z66_A Variable lymphocyte rec 100.0 9.4E-28 3.2E-32 243.4 19.0 280 270-629 9-294 (306)
55 3zyi_A Leucine-rich repeat-con 99.9 1.4E-26 4.9E-31 248.0 26.0 251 269-601 55-306 (452)
56 3zyj_A Leucine-rich repeat-con 99.9 1.7E-26 6E-31 246.4 26.1 248 270-599 45-293 (440)
57 1ozn_A Reticulon 4 receptor; N 99.9 6.5E-27 2.2E-31 234.5 18.5 89 538-626 154-242 (285)
58 3ogk_B Coronatine-insensitive 99.9 1.6E-29 5.4E-34 281.9 -0.7 332 241-624 162-528 (592)
59 3ogk_B Coronatine-insensitive 99.9 1.2E-29 4E-34 283.0 -3.6 407 143-619 110-548 (592)
60 1ozn_A Reticulon 4 receptor; N 99.9 3.5E-26 1.2E-30 229.1 20.8 225 222-474 14-239 (285)
61 4fcg_A Uncharacterized protein 99.9 4.2E-26 1.4E-30 232.6 19.1 234 292-622 81-314 (328)
62 3o53_A Protein LRIM1, AGAP0063 99.9 3.6E-28 1.2E-32 247.2 3.4 264 272-626 14-280 (317)
63 3o53_A Protein LRIM1, AGAP0063 99.9 1.8E-27 6.2E-32 242.1 6.7 274 294-657 12-286 (317)
64 3g06_A SSPH2 (leucine-rich rep 99.9 1.2E-24 4.2E-29 238.4 27.1 86 538-632 222-307 (622)
65 4fcg_A Uncharacterized protein 99.9 2.7E-25 9.3E-30 226.5 19.7 226 218-473 80-314 (328)
66 3oja_A Leucine-rich immune mol 99.9 1.3E-26 4.3E-31 249.5 8.6 235 292-617 34-270 (487)
67 3g06_A SSPH2 (leucine-rich rep 99.9 6.9E-24 2.4E-28 232.4 28.9 129 411-609 180-308 (622)
68 1wwl_A Monocyte differentiatio 99.9 2.7E-26 9.4E-31 232.8 8.7 209 239-473 39-266 (312)
69 1wwl_A Monocyte differentiatio 99.9 2.3E-26 7.7E-31 233.4 7.9 81 538-623 229-310 (312)
70 3oja_A Leucine-rich immune mol 99.9 9.5E-26 3.2E-30 242.6 12.0 247 314-650 32-286 (487)
71 2p1m_B Transport inhibitor res 99.9 3.8E-28 1.3E-32 270.9 -7.2 82 538-619 457-541 (594)
72 2p1m_B Transport inhibitor res 99.9 4.3E-28 1.5E-32 270.5 -8.6 431 11-471 58-542 (594)
73 2z62_A TOLL-like receptor 4, v 99.9 6.4E-24 2.2E-28 211.6 20.7 209 341-627 29-242 (276)
74 2o6q_A Variable lymphocyte rec 99.9 1.5E-23 5E-28 208.0 22.4 206 365-626 17-222 (270)
75 2z62_A TOLL-like receptor 4, v 99.9 6.3E-24 2.1E-28 211.7 19.1 207 389-650 30-241 (276)
76 1p9a_G Platelet glycoprotein I 99.9 2.8E-23 9.4E-28 207.6 21.5 205 360-624 6-210 (290)
77 2o6q_A Variable lymphocyte rec 99.9 6.9E-23 2.4E-27 203.1 23.7 206 388-650 17-222 (270)
78 1p9a_G Platelet glycoprotein I 99.9 1.8E-22 6.1E-27 201.7 22.2 206 311-600 5-210 (290)
79 3rfs_A Internalin B, repeat mo 99.9 7.2E-23 2.4E-27 203.1 17.8 224 320-633 23-246 (272)
80 3rfs_A Internalin B, repeat mo 99.9 3.4E-22 1.2E-26 198.2 17.0 86 289-376 60-145 (272)
81 3m19_A Variable lymphocyte rec 99.9 7.7E-22 2.6E-26 193.2 18.5 181 389-626 16-196 (251)
82 3m19_A Variable lymphocyte rec 99.9 4.2E-21 1.4E-25 188.0 19.1 181 412-648 14-194 (251)
83 3goz_A Leucine-rich repeat-con 99.9 7.4E-23 2.5E-27 212.2 6.3 262 273-602 3-301 (362)
84 3goz_A Leucine-rich repeat-con 99.9 6.7E-23 2.3E-27 212.5 5.5 129 248-377 3-151 (362)
85 2xwt_C Thyrotropin receptor; s 99.9 4E-21 1.4E-25 186.8 16.2 196 244-470 32-236 (239)
86 2xwt_C Thyrotropin receptor; s 99.9 3E-21 1E-25 187.7 15.1 78 538-619 156-236 (239)
87 4glp_A Monocyte differentiatio 99.9 6.4E-22 2.2E-26 200.5 10.4 209 340-623 91-308 (310)
88 2ast_B S-phase kinase-associat 99.9 3.8E-22 1.3E-26 205.2 7.3 252 294-630 49-314 (336)
89 2ca6_A RAN GTPase-activating p 99.9 6E-23 2E-27 215.2 1.1 88 538-625 217-319 (386)
90 2ast_B S-phase kinase-associat 99.8 1.1E-21 3.9E-26 201.6 9.0 200 244-471 48-258 (336)
91 4glp_A Monocyte differentiatio 99.8 8.7E-21 3E-25 192.1 13.8 226 146-377 65-307 (310)
92 2ca6_A RAN GTPase-activating p 99.8 4.4E-22 1.5E-26 208.6 3.5 65 538-602 245-320 (386)
93 1h6u_A Internalin H; cell adhe 99.8 4.7E-20 1.6E-24 186.1 18.0 194 337-623 38-231 (308)
94 1h6u_A Internalin H; cell adhe 99.8 3E-20 1E-24 187.5 15.9 148 290-473 39-186 (308)
95 2v9t_B SLIT homolog 2 protein 99.8 1.4E-20 4.8E-25 179.7 12.3 196 415-674 14-209 (220)
96 4ay9_X Follicle-stimulating ho 99.8 1.2E-19 4.2E-24 186.9 18.6 243 197-470 12-256 (350)
97 4ay9_X Follicle-stimulating ho 99.8 1.5E-19 5E-24 186.3 18.2 79 538-620 178-257 (350)
98 2o6s_A Variable lymphocyte rec 99.8 2.1E-19 7.2E-24 170.5 15.6 163 411-633 27-189 (208)
99 2v70_A SLIT-2, SLIT homolog 2 99.8 6.8E-20 2.3E-24 174.9 11.6 157 414-626 13-170 (220)
100 2v70_A SLIT-2, SLIT homolog 2 99.8 7.4E-19 2.5E-23 167.7 16.3 157 389-602 13-170 (220)
101 2xot_A Amphoterin-induced prot 99.8 1.4E-19 4.8E-24 187.2 11.9 179 390-625 21-205 (361)
102 2v9t_B SLIT homolog 2 protein 99.8 1.1E-18 3.9E-23 166.4 16.3 155 389-600 13-167 (220)
103 2o6s_A Variable lymphocyte rec 99.8 1.8E-18 6E-23 164.1 14.9 130 244-374 29-158 (208)
104 3cvr_A Invasion plasmid antige 99.8 3.1E-18 1.1E-22 185.2 17.0 187 341-632 60-253 (571)
105 3e6j_A Variable lymphocyte rec 99.8 5.6E-18 1.9E-22 162.8 16.2 156 414-626 21-176 (229)
106 3e6j_A Variable lymphocyte rec 99.8 5.8E-18 2E-22 162.7 16.2 157 437-650 20-176 (229)
107 2xot_A Amphoterin-induced prot 99.8 2.7E-18 9.2E-23 177.5 14.4 112 367-481 21-133 (361)
108 1h6t_A Internalin B; cell adhe 99.8 1.3E-17 4.3E-22 166.7 17.0 152 408-624 64-215 (291)
109 3cvr_A Invasion plasmid antige 99.7 1.5E-17 5.2E-22 179.8 17.5 188 317-609 60-254 (571)
110 1w8a_A SLIT protein; signaling 99.7 4.2E-17 1.4E-21 152.0 13.7 135 538-672 30-181 (192)
111 4ezg_A Putative uncharacterize 99.7 3.2E-17 1.1E-21 153.6 11.9 154 409-623 41-195 (197)
112 2wfh_A SLIT homolog 2 protein 99.7 3.5E-17 1.2E-21 152.3 11.9 135 538-673 32-182 (193)
113 1h6t_A Internalin B; cell adhe 99.7 9.8E-17 3.4E-21 160.2 15.9 169 193-377 45-213 (291)
114 1m9s_A Internalin B; cell inva 99.7 1.7E-16 5.7E-21 173.8 18.3 152 408-624 61-212 (605)
115 1xeu_A Internalin C; cellular 99.7 3.2E-17 1.1E-21 161.0 11.2 168 388-624 20-187 (263)
116 3sb4_A Hypothetical leucine ri 99.7 4.8E-17 1.6E-21 166.0 11.3 287 242-615 24-327 (329)
117 1w8a_A SLIT protein; signaling 99.7 1E-16 3.6E-21 149.2 12.0 87 539-625 56-142 (192)
118 1m9s_A Internalin B; cell inva 99.7 2E-16 6.9E-21 173.2 15.4 83 240-329 40-122 (605)
119 3sb4_A Hypothetical leucine ri 99.7 2.4E-17 8.3E-22 168.2 6.4 230 58-299 83-328 (329)
120 4fs7_A Uncharacterized protein 99.7 3.5E-15 1.2E-19 156.2 22.2 315 9-373 61-375 (394)
121 4ezg_A Putative uncharacterize 99.7 4.5E-16 1.5E-20 145.8 12.8 149 220-377 45-194 (197)
122 4fdw_A Leucine rich hypothetic 99.7 6.1E-15 2.1E-19 153.3 21.6 266 267-622 112-383 (401)
123 4fdw_A Leucine rich hypothetic 99.6 1.4E-14 4.8E-19 150.6 23.1 264 169-471 112-381 (401)
124 1xeu_A Internalin C; cellular 99.6 5.2E-16 1.8E-20 152.3 11.4 169 269-476 20-188 (263)
125 1dce_A Protein (RAB geranylger 99.6 2.5E-18 8.5E-23 187.2 -7.9 87 538-627 464-551 (567)
126 1dce_A Protein (RAB geranylger 99.6 2E-18 6.7E-23 188.0 -8.9 77 538-616 487-567 (567)
127 4fs7_A Uncharacterized protein 99.6 1.5E-14 5.1E-19 151.4 20.8 217 238-468 89-305 (394)
128 2wfh_A SLIT homolog 2 protein 99.6 6.4E-15 2.2E-19 137.0 14.3 89 538-626 55-143 (193)
129 2ell_A Acidic leucine-rich nuc 99.6 2E-15 6.9E-20 137.4 10.4 85 538-622 72-160 (168)
130 2ell_A Acidic leucine-rich nuc 99.6 1.7E-15 5.8E-20 138.0 9.6 137 411-603 23-164 (168)
131 2o6r_A Variable lymphocyte rec 99.6 8.2E-15 2.8E-19 134.7 13.6 89 538-626 53-141 (177)
132 2je0_A Acidic leucine-rich nuc 99.6 3.1E-15 1.1E-19 133.2 9.1 81 538-618 65-149 (149)
133 2o6r_A Variable lymphocyte rec 99.6 2.1E-14 7.3E-19 131.8 13.1 114 537-650 28-141 (177)
134 2je0_A Acidic leucine-rich nuc 99.6 4.1E-15 1.4E-19 132.4 7.5 129 411-594 16-149 (149)
135 4b8c_D Glucose-repressible alc 99.5 1.5E-15 5.1E-20 170.7 5.0 196 340-619 173-369 (727)
136 4b8c_D Glucose-repressible alc 99.5 1.9E-15 6.5E-20 169.9 4.7 166 292-482 173-338 (727)
137 4gt6_A Cell surface protein; l 99.5 3.9E-12 1.4E-16 133.0 24.5 298 9-350 53-367 (394)
138 3g39_A Variable lymphocyte rec 99.5 1.2E-13 4.1E-18 125.5 11.2 88 537-624 30-117 (170)
139 1a9n_A U2A', U2A'; complex (nu 99.5 4.6E-14 1.6E-18 129.4 8.4 84 538-623 65-154 (176)
140 1a9n_A U2A', U2A'; complex (nu 99.5 8.5E-14 2.9E-18 127.6 8.7 134 408-599 15-154 (176)
141 4gt6_A Cell surface protein; l 99.4 4E-12 1.4E-16 132.9 20.9 132 236-373 56-191 (394)
142 2r9u_A Variable lymphocyte rec 99.4 3.9E-13 1.3E-17 122.5 11.2 106 519-625 16-121 (174)
143 3g39_A Variable lymphocyte rec 99.4 5.4E-13 1.8E-17 121.1 12.0 110 538-650 10-119 (170)
144 1ds9_A Outer arm dynein; leuci 99.4 1.3E-15 4.3E-20 142.9 -6.9 153 410-622 16-185 (198)
145 2r9u_A Variable lymphocyte rec 99.4 1.9E-12 6.6E-17 117.8 12.0 109 539-650 14-122 (174)
146 1ds9_A Outer arm dynein; leuci 99.3 8.2E-15 2.8E-19 137.3 -7.5 138 432-627 14-158 (198)
147 2ifg_A High affinity nerve gro 99.3 6.3E-12 2.1E-16 129.2 8.4 112 538-650 32-145 (347)
148 2ifg_A High affinity nerve gro 99.3 1.1E-11 3.8E-16 127.4 9.9 109 540-651 11-121 (347)
149 4h09_A Hypothetical leucine ri 99.2 2E-09 6.7E-14 112.0 23.2 60 556-616 281-340 (379)
150 3un9_A NLR family member X1; l 99.2 8.1E-13 2.8E-17 136.0 -3.3 136 194-329 101-252 (372)
151 4h09_A Hypothetical leucine ri 99.2 5.8E-09 2E-13 108.4 25.6 145 407-609 212-356 (379)
152 3un9_A NLR family member X1; l 99.1 2.1E-12 7.3E-17 132.8 -2.2 135 243-377 101-252 (372)
153 2ra8_A Uncharacterized protein 98.7 2.1E-08 7.3E-13 102.0 7.5 83 141-227 135-227 (362)
154 2ra8_A Uncharacterized protein 98.7 1.2E-08 4.2E-13 103.8 5.0 59 311-372 167-227 (362)
155 1io0_A Tropomodulin; LRR prote 98.3 1.1E-07 3.7E-12 87.2 1.5 119 15-158 32-164 (185)
156 1io0_A Tropomodulin; LRR prote 98.3 7.9E-08 2.7E-12 88.1 -0.1 45 429-473 29-78 (185)
157 3rw6_A Nuclear RNA export fact 98.2 8.5E-07 2.9E-11 85.2 4.7 120 6-127 128-258 (267)
158 3rw6_A Nuclear RNA export fact 98.2 1.2E-06 4E-11 84.2 5.4 61 537-599 170-234 (267)
159 3e4g_A ATP synthase subunit S, 97.9 1E-06 3.6E-11 78.1 -0.9 84 538-621 62-151 (176)
160 3e4g_A ATP synthase subunit S, 97.7 8.5E-06 2.9E-10 72.3 2.1 82 269-350 62-149 (176)
161 3rfe_A Platelet glycoprotein I 97.7 3.6E-05 1.2E-09 65.2 4.6 96 565-669 12-109 (130)
162 1pgv_A TMD-1, tropomodulin TMD 97.2 0.00012 4.2E-09 66.1 2.0 120 37-157 35-169 (197)
163 3rfe_A Platelet glycoprotein I 96.9 0.0017 5.8E-08 54.8 6.7 57 22-81 11-68 (130)
164 1pgv_A TMD-1, tropomodulin TMD 96.9 0.00033 1.1E-08 63.4 1.9 11 242-252 40-50 (197)
165 2lz0_A Uncharacterized protein 78.1 2.2 7.4E-05 33.4 4.1 46 30-77 7-52 (100)
166 2lz0_A Uncharacterized protein 77.5 2.8 9.7E-05 32.8 4.6 43 9-52 10-52 (100)
167 2k1k_A Ephrin type-A receptor 28.3 31 0.0011 21.2 1.8 11 681-691 14-24 (38)
No 1
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=100.00 E-value=6.2e-74 Score=655.62 Aligned_cols=642 Identities=30% Similarity=0.426 Sum_probs=532.9
Q ss_pred ccccCCCCCCeeeCCCCCCCCCcch--hccCCCCCCEEeCCCCCCcccCCccccCCCCCCCEEECCCCcccCcCCccc--
Q 005038 13 QGLCSLVHLQELYIASNDLRGSLPW--CMANMTSLRILDVSSNQLTGSISSSPLVHLTSIEELMLSNNYFQIPISLEP-- 88 (717)
Q Consensus 13 ~~~~~l~~L~~L~Ls~n~i~~~~~~--~~~~l~~L~~L~Ls~n~i~~~i~~~~~~~l~~L~~L~L~~n~~~~~~~~~~-- 88 (717)
..|+++++|++|||++|.+.+.+|. .++++++|++|||++|.+.+.+|...+.++++|++|++++|.+++..+...
T Consensus 94 ~~~~~l~~L~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~ 173 (768)
T 3rgz_A 94 SGFKCSASLTSLDLSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTLDFPGKVSGGLKLNSLEVLDLSANSISGANVVGWVL 173 (768)
T ss_dssp CCCCCCTTCCEEECCSSEEEEEGGGGGGGGGCTTCCEEECCSSEEECCSSCCSCCCCTTCSEEECCSSCCEEETHHHHHH
T ss_pred hhhccCCCCCEEECCCCcCCCcCCChHHHhCCCCCCEEECcCCccCCcCCHHHhccCCCCCEEECCCCccCCcCChhhhh
Confidence 3688888899999998888887777 888888999999999888877776444788889999999888875444221
Q ss_pred ccCCCCCCEEEccCCcccccccccccccCCCccccEEEccCCCCCCCCCchhhcCCCCCCEEEccCCCCcccCChhhhhC
Q 005038 89 LFNYSRLKIFNAENNEIKAEITESHSLIAPKFQLNTLSLSSNYGDGFIFPKFLYHQHDLEYVDLSHIKMNGEFPNWLLEN 168 (717)
Q Consensus 89 ~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~ 168 (717)
+.++++|++|++++|.+.+..+ ...+++|++|++ .++.+.+.+|. +..+++|++|++++|.+++.+|..+ ..
T Consensus 174 ~~~l~~L~~L~Ls~n~l~~~~~-----~~~l~~L~~L~L-s~n~l~~~~~~-l~~l~~L~~L~Ls~n~l~~~~~~~l-~~ 245 (768)
T 3rgz_A 174 SDGCGELKHLAISGNKISGDVD-----VSRCVNLEFLDV-SSNNFSTGIPF-LGDCSALQHLDISGNKLSGDFSRAI-ST 245 (768)
T ss_dssp TTCCTTCCEEECCSSEEESCCB-----CTTCTTCCEEEC-CSSCCCSCCCB-CTTCCSCCEEECCSSCCCSCHHHHT-TT
T ss_pred hccCCCCCEEECCCCcccccCC-----cccCCcCCEEEC-cCCcCCCCCcc-cccCCCCCEEECcCCcCCCcccHHH-hc
Confidence 6788899999999988875433 256779999999 55566666776 8999999999999999998888775 88
Q ss_pred CCCCCEEEccCCcCcccCccCcCCCCCcCEEEccCCcCCccCCccccccCCCCcEEECCCCCCCccCCccccCCCCCCEE
Q 005038 169 NTKLETLFLVNDSLAGPFRLPIHSHKRLRQLDVSNNNIRGHIPVKIGDVLPSLYVFNNSMNALDGSIPSSFGNMKFLQIL 248 (717)
Q Consensus 169 ~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~ls~n~i~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L 248 (717)
+++|++|++++|.+.+..+.. .+++|++|++++|.+++.+|..++..+++|++|++++|.+.+.+|..+..+++|++|
T Consensus 246 l~~L~~L~Ls~n~l~~~~~~~--~l~~L~~L~L~~n~l~~~ip~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L 323 (768)
T 3rgz_A 246 CTELKLLNISSNQFVGPIPPL--PLKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESL 323 (768)
T ss_dssp CSSCCEEECCSSCCEESCCCC--CCTTCCEEECCSSEEEESCCCCSCTTCTTCSEEECCSSEEEECCCGGGGGCTTCCEE
T ss_pred CCCCCEEECCCCcccCccCcc--ccCCCCEEECcCCccCCccCHHHHhhcCcCCEEECcCCcCCCccchHHhcCCCccEE
Confidence 999999999999998876654 889999999999999999999988877999999999999999999999999999999
Q ss_pred EccCCccccccchhhhhCCCCCCEEEccCcccCccCcccccCCC-CCCeEECcCCcCcccCcccccC--CCCCCEEEccC
Q 005038 249 DLSNNHLTGEIPEHLAVGCVNLQFLALSNNNLQGHLFSRNFNLT-NLQWLQLEGNRFVGEIPQSLSK--CSSLEGLYLNN 325 (717)
Q Consensus 249 ~Ls~n~l~~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~l~-~L~~L~L~~n~l~~~~~~~~~~--l~~L~~L~L~~ 325 (717)
++++|.+++.+|...+..+++|++|++++|.+.+..|..+..++ +|++|++++|.+.+..|..+.. +++|++|++++
T Consensus 324 ~L~~n~l~~~ip~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~~L~~L~Ls~N~l~~~~~~~~~~~~~~~L~~L~L~~ 403 (768)
T 3rgz_A 324 ALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQN 403 (768)
T ss_dssp ECCSSEEEEECCHHHHTTCTTCCEEECCSSEEEECCCTTHHHHTTTCSEEECCSSEEEEECCTTTTCSTTCCCCEEECCS
T ss_pred ECCCCcccCcCCHHHHhcCCCCCEEeCcCCccCccccHHHHhhhcCCcEEEccCCCcCCCcChhhhhcccCCccEEECCC
Confidence 99999999899988777899999999999999988999988887 9999999999999888877776 88999999999
Q ss_pred CcCcCcCCcccCCCCCCCEEEccCCcccCCcccccCCCCCCCEEEccCCcCcccCCCccc-cccccEEeccCcccccccC
Q 005038 326 NSLLGKIPRWLGNLTRLQYIIMPNNHLEGPIPVEFCQLDSLQILDISDNNISGSLPSCFH-PLSIKQVHLSKNMLHGQLK 404 (717)
Q Consensus 326 n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~-~~~L~~L~l~~n~~~~~~~ 404 (717)
|.+.+..|..+..+++|+.|++++|.+++..|..+..+++|+.|++++|.+.+.+|..+. .++|+.|++++|.+.+.++
T Consensus 404 n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p 483 (768)
T 3rgz_A 404 NGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIP 483 (768)
T ss_dssp SEEEEECCGGGGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCC
T ss_pred CccccccCHHHhcCCCCCEEECcCCcccCcccHHHhcCCCCCEEECCCCcccCcCCHHHcCCCCceEEEecCCcccCcCC
Confidence 999999999999999999999999999999999999999999999999999988887665 7899999999999988877
Q ss_pred ccccCCCCcCCEEeCCCCcCCcccchhhhCCCCCcEEEcCCCccccccchhccCCCCCCEEEccCCcCccCCCccccccc
Q 005038 405 RGTFFNCSSLVTLDLSYNRLNGSIPDWVDGLSQLSHLILGHNNLEGEVSVQLCELNQLQLLDLSNNNLHGPIPPCFDNTT 484 (717)
Q Consensus 405 ~~~~~~~~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~ 484 (717)
.. +..+++|++|++++|++.+.+|.++..+++|++|++++|++++.+|..+..+++|+.|++++|++++.+|..+....
T Consensus 484 ~~-l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~~~ 562 (768)
T 3rgz_A 484 SG-LSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQS 562 (768)
T ss_dssp GG-GGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEEECCGGGGGCTTCCEEECCSSEEESBCCGGGGTTT
T ss_pred HH-HhcCCCCCEEEccCCccCCcCChHHhcCCCCCEEECCCCcccCcCCHHHcCCCCCCEEECCCCccCCcCChHHhccc
Confidence 66 89999999999999999999999999999999999999999999999999999999999999999999998776543
Q ss_pred ccccccCCCCCCcc----------------hhhhhhcccccccccccccceEEEeecccee-e-eccccccccceeeCCC
Q 005038 485 LHESYSNSSSPDEQ----------------FEIFFSIEGHQGFLEKQNHEIFEFTTKNIAY-I-YQGKVLSLLSGLDLSC 546 (717)
Q Consensus 485 ~~~~~~~~~~~~~~----------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~-~~~~~l~~L~~L~L~~ 546 (717)
.............. ...+.... ..............+..+.... + .....++.|+.|||++
T Consensus 563 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~l~~~~~~g~~~~~~~~l~~L~~LdLs~ 641 (768)
T 3rgz_A 563 GKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIR-SEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSY 641 (768)
T ss_dssp TCBCCSTTCSCEEEEEECCSCCTTCCSSEEEEECTTCC-GGGGGGGGGTCCSCTTSCEEEEECCCSCSSSBCCCEEECCS
T ss_pred chhhhhcccccccccccccccccccccccccccccccc-chhhhccccccccccccceecccCchhhhccccccEEECcC
Confidence 22211111000000 00000000 0000000000000000000000 0 1123467899999999
Q ss_pred CccCCCCcccccCCccCCeEeCCCcccCCCCCcCCCCCCCCCEEECCCCcCCccCchhhcCCCCCCEEeccCCcCeecCC
Q 005038 547 NKLIGHIPPQIGNLTRIQTLNLSHNNLTGSIPSTFSNLKHVESLDLSNNKLNGKIPHQLVELKTLEVFSVAYNNLSGEIP 626 (717)
Q Consensus 547 n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~N~i~~~~p~~~~~l~~L~~L~l~~N~l~~~~p 626 (717)
|++++.+|..++++++|+.|+|++|++++.+|..|+++++|++|||++|++++.+|..+..+++|++||+++|+++|.+|
T Consensus 642 N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~l~~L~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~ls~N~l~g~iP 721 (768)
T 3rgz_A 642 NMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDLSNNNLSGPIP 721 (768)
T ss_dssp SCCBSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEECCCGGGGGCCCCSEEECCSSEEEEECC
T ss_pred CcccccCCHHHhccccCCEEeCcCCccCCCCChHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECcCCcccccCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCcccCCCCcccccCCcCCCCCCCCCCCCCCCCCCCCCCC
Q 005038 627 EWKAQFATFNESSYEGNTFLCGLPLPICRSPATMPEASIGN 667 (717)
Q Consensus 627 ~~~~~~~~l~~~~~~~n~~~c~~~l~~C~~~~~~~~~~~~~ 667 (717)
+. +++.++...++.|||.+||.|++.|.......+..+.|
T Consensus 722 ~~-~~~~~~~~~~~~gN~~Lcg~~l~~C~~~~~~~~~~~~~ 761 (768)
T 3rgz_A 722 EM-GQFETFPPAKFLNNPGLCGYPLPRCDPSNADGYAHHQR 761 (768)
T ss_dssp SS-SSGGGSCGGGGCSCTEEESTTSCCCCSCC---------
T ss_pred Cc-hhhccCCHHHhcCCchhcCCCCcCCCCCccCCCCCCCC
Confidence 86 68999999999999999999988898766655544443
No 2
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=100.00 E-value=5.1e-66 Score=590.26 Aligned_cols=636 Identities=27% Similarity=0.371 Sum_probs=539.7
Q ss_pred CCCCCccee---eCcccccCCCCCCeeeCCCCCCCCCcchhccCCCCCCEEeCCCCCCcccCCc-cccCCCCCCCEEECC
Q 005038 1 MSSCEVNGV---VRSQGLCSLVHLQELYIASNDLRGSLPWCMANMTSLRILDVSSNQLTGSISS-SPLVHLTSIEELMLS 76 (717)
Q Consensus 1 l~~~~~~g~---i~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~i~~-~~~~~l~~L~~L~L~ 76 (717)
|+++++.|. +| .++.++++|+.++++.+.+. .+|..|+++++|++|||++|.+.+.+|. ..++++++|++|+++
T Consensus 57 L~~~~l~g~~~~l~-~~l~~L~~L~~l~~~~~~~~-~l~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~Ls 134 (768)
T 3rgz_A 57 LSSKPLNVGFSAVS-SSLLSLTGLESLFLSNSHIN-GSVSGFKCSASLTSLDLSRNSLSGPVTTLTSLGSCSGLKFLNVS 134 (768)
T ss_dssp CTTSCCCEEHHHHH-HHTTTCTTCCEEECTTSCEE-ECCCCCCCCTTCCEEECCSSEEEEEGGGGGGGGGCTTCCEEECC
T ss_pred CCCCCcCCccCccC-hhHhccCcccccCCcCCCcC-CCchhhccCCCCCEEECCCCcCCCcCCChHHHhCCCCCCEEECc
Confidence 578889998 88 48999999999999999876 4568899999999999999999987765 258999999999999
Q ss_pred CCcccCcCCcccccCCCCCCEEEccCCcccccccccccccCCCccccEEEccCCCCCCCCCchhhcCCCCCCEEEccCCC
Q 005038 77 NNYFQIPISLEPLFNYSRLKIFNAENNEIKAEITESHSLIAPKFQLNTLSLSSNYGDGFIFPKFLYHQHDLEYVDLSHIK 156 (717)
Q Consensus 77 ~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~ 156 (717)
+|.+.+..+...+.++++|++|++++|.+.+..+..+..+..+++|++|+++. +.+.+..+. ..+++|++|++++|.
T Consensus 135 ~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~l~~L~~L~Ls~-n~l~~~~~~--~~l~~L~~L~Ls~n~ 211 (768)
T 3rgz_A 135 SNTLDFPGKVSGGLKLNSLEVLDLSANSISGANVVGWVLSDGCGELKHLAISG-NKISGDVDV--SRCVNLEFLDVSSNN 211 (768)
T ss_dssp SSEEECCSSCCSCCCCTTCSEEECCSSCCEEETHHHHHHTTCCTTCCEEECCS-SEEESCCBC--TTCTTCCEEECCSSC
T ss_pred CCccCCcCCHHHhccCCCCCEEECCCCccCCcCChhhhhhccCCCCCEEECCC-CcccccCCc--ccCCcCCEEECcCCc
Confidence 99998777765568999999999999999876655443456778999999944 445544443 789999999999999
Q ss_pred CcccCChhhhhCCCCCCEEEccCCcCcccCccCcCCCCCcCEEEccCCcCCccCCccccccCCCCcEEECCCCCCCccCC
Q 005038 157 MNGEFPNWLLENNTKLETLFLVNDSLAGPFRLPIHSHKRLRQLDVSNNNIRGHIPVKIGDVLPSLYVFNNSMNALDGSIP 236 (717)
Q Consensus 157 ~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~ls~n~i~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~ 236 (717)
+.+.+|. +.++++|++|++++|.+.+..+..+..+++|++|++++|.+++.+|.. .+++|++|++++|.+.+.+|
T Consensus 212 l~~~~~~--l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~---~l~~L~~L~L~~n~l~~~ip 286 (768)
T 3rgz_A 212 FSTGIPF--LGDCSALQHLDISGNKLSGDFSRAISTCTELKLLNISSNQFVGPIPPL---PLKSLQYLSLAENKFTGEIP 286 (768)
T ss_dssp CCSCCCB--CTTCCSCCEEECCSSCCCSCHHHHTTTCSSCCEEECCSSCCEESCCCC---CCTTCCEEECCSSEEEESCC
T ss_pred CCCCCcc--cccCCCCCEEECcCCcCCCcccHHHhcCCCCCEEECCCCcccCccCcc---ccCCCCEEECcCCccCCccC
Confidence 9987777 589999999999999999988999999999999999999999877765 57899999999999999999
Q ss_pred ccccCC-CCCCEEEccCCccccccchhhhhCCCCCCEEEccCcccCccCccc-ccCCCCCCeEECcCCcCcccCcccccC
Q 005038 237 SSFGNM-KFLQILDLSNNHLTGEIPEHLAVGCVNLQFLALSNNNLQGHLFSR-NFNLTNLQWLQLEGNRFVGEIPQSLSK 314 (717)
Q Consensus 237 ~~l~~l-~~L~~L~Ls~n~l~~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~-~~~l~~L~~L~L~~n~l~~~~~~~~~~ 314 (717)
..+... ++|++|++++|.+++.+|..+. .+++|++|++++|.+.+.+|.. +..+++|++|++++|.+.+..|..+..
T Consensus 287 ~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~-~l~~L~~L~L~~n~l~~~ip~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~ 365 (768)
T 3rgz_A 287 DFLSGACDTLTGLDLSGNHFYGAVPPFFG-SCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTN 365 (768)
T ss_dssp CCSCTTCTTCSEEECCSSEEEECCCGGGG-GCTTCCEEECCSSEEEEECCHHHHTTCTTCCEEECCSSEEEECCCTTHHH
T ss_pred HHHHhhcCcCCEEECcCCcCCCccchHHh-cCCCccEEECCCCcccCcCCHHHHhcCCCCCEEeCcCCccCccccHHHHh
Confidence 988775 9999999999999978887765 5999999999999998777765 899999999999999999889998988
Q ss_pred CC-CCCEEEccCCcCcCcCCcccCC--CCCCCEEEccCCcccCCcccccCCCCCCCEEEccCCcCcccCCCccc-ccccc
Q 005038 315 CS-SLEGLYLNNNSLLGKIPRWLGN--LTRLQYIIMPNNHLEGPIPVEFCQLDSLQILDISDNNISGSLPSCFH-PLSIK 390 (717)
Q Consensus 315 l~-~L~~L~L~~n~~~~~~~~~~~~--l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~-~~~L~ 390 (717)
++ +|++|++++|.+.+..|..+.. +++|+.|++++|.+++.+|..+..+++|++|++++|.+.+..|..+. .++|+
T Consensus 366 l~~~L~~L~Ls~N~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~ 445 (768)
T 3rgz_A 366 LSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLR 445 (768)
T ss_dssp HTTTCSEEECCSSEEEEECCTTTTCSTTCCCCEEECCSSEEEEECCGGGGGCTTCCEEECCSSEEESCCCGGGGGCTTCC
T ss_pred hhcCCcEEEccCCCcCCCcChhhhhcccCCccEEECCCCccccccCHHHhcCCCCCEEECcCCcccCcccHHHhcCCCCC
Confidence 87 9999999999999888887776 88999999999999999999999999999999999999988887765 78999
Q ss_pred EEeccCcccccccCccccCCCCcCCEEeCCCCcCCcccchhhhCCCCCcEEEcCCCccccccchhccCCCCCCEEEccCC
Q 005038 391 QVHLSKNMLHGQLKRGTFFNCSSLVTLDLSYNRLNGSIPDWVDGLSQLSHLILGHNNLEGEVSVQLCELNQLQLLDLSNN 470 (717)
Q Consensus 391 ~L~l~~n~~~~~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n 470 (717)
.|++++|.+.+.++.. +..+++|++|++++|++.+..|.++.++++|++|++++|++++..|..+..+++|++|++++|
T Consensus 446 ~L~L~~n~l~~~~p~~-~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N 524 (768)
T 3rgz_A 446 DLKLWLNMLEGEIPQE-LMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNN 524 (768)
T ss_dssp EEECCSSCCCSCCCGG-GGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSS
T ss_pred EEECCCCcccCcCCHH-HcCCCCceEEEecCCcccCcCCHHHhcCCCCCEEEccCCccCCcCChHHhcCCCCCEEECCCC
Confidence 9999999998887776 889999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCccCCCcccccccccccccCCCCCCc-ch-hhhhhcccccccccccccceEEEeeccceee---------------ecc
Q 005038 471 NLHGPIPPCFDNTTLHESYSNSSSPDE-QF-EIFFSIEGHQGFLEKQNHEIFEFTTKNIAYI---------------YQG 533 (717)
Q Consensus 471 ~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------~~~ 533 (717)
++++.+|..+..++.++......+... .. ..++..................+........ ...
T Consensus 525 ~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 604 (768)
T 3rgz_A 525 SFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQL 604 (768)
T ss_dssp CCEEECCGGGGGCTTCCEEECCSSEEESBCCGGGGTTTTCBCCSTTCSCEEEEEECCSCCTTCCSSEEEEECTTCCGGGG
T ss_pred cccCcCCHHHcCCCCCCEEECCCCccCCcCChHHhcccchhhhhccccccccccccccccccccccccccccccccchhh
Confidence 999999999888775555444433211 11 1111110000000000111122221111000 001
Q ss_pred ccccccceeeCCCCccCCCCcccccCCccCCeEeCCCcccCCCCCcCCCCCCCCCEEECCCCcCCccCchhhcCCCCCCE
Q 005038 534 KVLSLLSGLDLSCNKLIGHIPPQIGNLTRIQTLNLSHNNLTGSIPSTFSNLKHVESLDLSNNKLNGKIPHQLVELKTLEV 613 (717)
Q Consensus 534 ~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~N~i~~~~p~~~~~l~~L~~ 613 (717)
..++.++.++++.|.+.+.+|..++.+++|+.|+|++|++++.+|..|+++++|+.|+|++|++++.+|+.+..+++|++
T Consensus 605 ~~l~~~~~~~l~~~~~~g~~~~~~~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~l~~L~~L~~ 684 (768)
T 3rgz_A 605 NRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNI 684 (768)
T ss_dssp GGGGGTCCSCTTSCEEEEECCCSCSSSBCCCEEECCSSCCBSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCE
T ss_pred hccccccccccccceecccCchhhhccccccEEECcCCcccccCCHHHhccccCCEEeCcCCccCCCCChHHhCCCCCCE
Confidence 23455667888889999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EeccCCcCeecCCCCCcccCCCCcccccCCcCCCC
Q 005038 614 FSVAYNNLSGEIPEWKAQFATFNESSYEGNTFLCG 648 (717)
Q Consensus 614 L~l~~N~l~~~~p~~~~~~~~l~~~~~~~n~~~c~ 648 (717)
||+++|+++|.+|..+..+..++.+.+++|+....
T Consensus 685 LdLs~N~l~g~ip~~l~~l~~L~~L~ls~N~l~g~ 719 (768)
T 3rgz_A 685 LDLSSNKLDGRIPQAMSALTMLTEIDLSNNNLSGP 719 (768)
T ss_dssp EECCSSCCEECCCGGGGGCCCCSEEECCSSEEEEE
T ss_pred EECCCCcccCcCChHHhCCCCCCEEECcCCccccc
Confidence 99999999999999999999999999999976543
No 3
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=100.00 E-value=7.8e-62 Score=551.61 Aligned_cols=609 Identities=21% Similarity=0.223 Sum_probs=427.9
Q ss_pred CCCCcceeeCcccccCCCCCCeeeCCCCCCCCCcchhccCCCCCCEEeCCCCCCcccCCccccCCCCCCCEEECCCCccc
Q 005038 2 SSCEVNGVVRSQGLCSLVHLQELYIASNDLRGSLPWCMANMTSLRILDVSSNQLTGSISSSPLVHLTSIEELMLSNNYFQ 81 (717)
Q Consensus 2 ~~~~~~g~i~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~i~~~~~~~l~~L~~L~L~~n~~~ 81 (717)
++++++ .||. .+. +++++|++++|.+++..+..|.++++|++|+|++|.+++ ++..+|.++++|++|++++|.++
T Consensus 12 s~~~L~-~ip~-~~~--~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~-~~~~~~~~l~~L~~L~L~~n~l~ 86 (680)
T 1ziw_A 12 SHLKLT-QVPD-DLP--TNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISK-LEPELCQKLPMLKVLNLQHNELS 86 (680)
T ss_dssp CSSCCS-SCCS-CSC--TTCSEEECCSSCCCCCCGGGGGGGTTCSEEECCSSCCCC-CCTTHHHHCTTCCEEECCSSCCC
T ss_pred CCCCcc-cccc-ccC--CCCcEEECCCCCCCCcCHHHHhCCCcCcEEECCCCccCc-cCHHHHhcccCcCEEECCCCccC
Confidence 456666 6774 343 789999999999998888889999999999999999984 44448899999999999999987
Q ss_pred CcCCcccccCCCCCCEEEccCCcccccccccccccCCCccccEEEccCCCCCCCCCchhhcCCCCCCEEEccCCCCcccC
Q 005038 82 IPISLEPLFNYSRLKIFNAENNEIKAEITESHSLIAPKFQLNTLSLSSNYGDGFIFPKFLYHQHDLEYVDLSHIKMNGEF 161 (717)
Q Consensus 82 ~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~ 161 (717)
.++...|.++++|++|++++|.+....+.. +..+++|++|++ +++.+.+..+..+..+++|++|++++|.+++..
T Consensus 87 -~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~---~~~l~~L~~L~L-s~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~ 161 (680)
T 1ziw_A 87 -QLSDKTFAFCTNLTELHLMSNSIQKIKNNP---FVKQKNLITLDL-SHNGLSSTKLGTQVQLENLQELLLSNNKIQALK 161 (680)
T ss_dssp -CCCTTTTTTCTTCSEEECCSSCCCCCCSCT---TTTCTTCCEEEC-CSSCCSCCCCCSSSCCTTCCEEECCSSCCCCBC
T ss_pred -ccChhhhccCCCCCEEECCCCccCccChhH---ccccCCCCEEEC-CCCcccccCchhhcccccCCEEEccCCcccccC
Confidence 466567899999999999999987654433 566779999999 555666777788889999999999999998655
Q ss_pred Chhh-hhCCCCCCEEEccCCcCcccCccCcCCCCCcCEEEccCCcCCccCCccccc--cCCCCcEEECCCCCCCccCCcc
Q 005038 162 PNWL-LENNTKLETLFLVNDSLAGPFRLPIHSHKRLRQLDVSNNNIRGHIPVKIGD--VLPSLYVFNNSMNALDGSIPSS 238 (717)
Q Consensus 162 ~~~~-~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~ls~n~i~~~~~~~~~~--~l~~L~~L~l~~n~~~~~~~~~ 238 (717)
+..+ ...+++|++|++++|.+.+..+..+..+++|+.|+++++.+.+.....+.. ..++|+.|++++|.+.+..|..
T Consensus 162 ~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~l~~~~L~~L~L~~n~l~~~~~~~ 241 (680)
T 1ziw_A 162 SEELDIFANSSLKKLELSSNQIKEFSPGCFHAIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQLSTTSNTT 241 (680)
T ss_dssp HHHHGGGTTCEESEEECTTCCCCCBCTTGGGGSSEECEEECTTCCCHHHHHHHHHHHHTTSCCCEEECTTSCCCEECTTT
T ss_pred HHHhhccccccccEEECCCCcccccChhhhhhhhhhhhhhccccccChhhHHHHHHHhhhccccEEEccCCcccccChhH
Confidence 5443 125688999999999999888888888888888888887765322221111 1367888888888888777777
Q ss_pred ccCCCC--CCEEEccCCccccccchhhhhCCCCCCEEEccCcccCccCcccccCCCCCCeEECcCCcCcc-----cCc--
Q 005038 239 FGNMKF--LQILDLSNNHLTGEIPEHLAVGCVNLQFLALSNNNLQGHLFSRNFNLTNLQWLQLEGNRFVG-----EIP-- 309 (717)
Q Consensus 239 l~~l~~--L~~L~Ls~n~l~~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~-----~~~-- 309 (717)
+..++. |++|++++|.++ .++...+..+++|++|++++|.+.+..+..+.++++|++|++++|...+ .+|
T Consensus 242 ~~~l~~~~L~~L~Ls~n~l~-~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~lp~i 320 (680)
T 1ziw_A 242 FLGLKWTNLTMLDLSYNNLN-VVGNDSFAWLPQLEYFFLEYNNIQHLFSHSLHGLFNVRYLNLKRSFTKQSISLASLPKI 320 (680)
T ss_dssp TGGGGGSCCCEEECTTSCCC-EECTTTTTTCTTCCEEECCSCCBSEECTTTTTTCTTCCEEECTTCBCCC------CCEE
T ss_pred hhccCcCCCCEEECCCCCcC-ccCcccccCcccccEeeCCCCccCccChhhhcCCCCccEEeccchhhhccccccccccc
Confidence 777654 888888888887 4444444568888888888888888778888888888888888765432 122
Q ss_pred --ccccCCCCCCEEEccCCcCcCcCCcccCCCCCCCEEEccCCcccCC--cccccCC--CCCCCEEEccCCcCcccCCCc
Q 005038 310 --QSLSKCSSLEGLYLNNNSLLGKIPRWLGNLTRLQYIIMPNNHLEGP--IPVEFCQ--LDSLQILDISDNNISGSLPSC 383 (717)
Q Consensus 310 --~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~--~~~~~~~--l~~L~~L~l~~n~~~~~~~~~ 383 (717)
..+..+++|++|++++|.+.+..+..|..+++|+.|++++|.+... ....|.. .++|+.|++++|++.+..+..
T Consensus 321 ~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~~~~~~l~~~~f~~~~~~~L~~L~L~~n~l~~~~~~~ 400 (680)
T 1ziw_A 321 DDFSFQWLKCLEHLNMEDNDIPGIKSNMFTGLINLKYLSLSNSFTSLRTLTNETFVSLAHSPLHILNLTKNKISKIESDA 400 (680)
T ss_dssp CTTTTTTCTTCCEEECCSCCBCCCCTTTTTTCTTCCEEECTTCBSCCCEECTTTTGGGTTSCCCEEECTTSCCCEECTTT
T ss_pred ChhhcccCCCCCEEECCCCccCCCChhHhccccCCcEEECCCCchhhhhcchhhhcccccCcCceEECCCCCCCeEChhh
Confidence 2577788888888888888877777788888888888888864322 2222322 257888888888888777766
Q ss_pred cc-cccccEEeccCcccccccCccccCCCCcCCEEeCCCCcCCcccchhhhCCCCCcEEEcCCCccc--cccchhccCCC
Q 005038 384 FH-PLSIKQVHLSKNMLHGQLKRGTFFNCSSLVTLDLSYNRLNGSIPDWVDGLSQLSHLILGHNNLE--GEVSVQLCELN 460 (717)
Q Consensus 384 ~~-~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~--~~~~~~l~~l~ 460 (717)
+. .++|+.|++++|.+.+.++...|..+++|++|++++|++.+..+..|..+++|+.|++++|.+. +..|..+..++
T Consensus 401 ~~~l~~L~~L~L~~N~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~p~~~~~l~ 480 (680)
T 1ziw_A 401 FSWLGHLEVLDLGLNEIGQELTGQEWRGLENIFEIYLSYNKYLQLTRNSFALVPSLQRLMLRRVALKNVDSSPSPFQPLR 480 (680)
T ss_dssp TTTCTTCCEEECCSSCCEEECCSGGGTTCTTCCEEECCSCSEEECCTTTTTTCTTCCEEECTTSCCBCTTCSSCTTTTCT
T ss_pred hhCCCCCCEEeCCCCcCccccCcccccCcccccEEecCCCCcceeChhhhhcCcccccchhccccccccccCCcccccCC
Confidence 54 6788888888888877777666888888888888888887777778888888888888888876 45677788888
Q ss_pred CCCEEEccCCcCccCCCcccccccccccccCCCCCCcchhhhhhcccccccccccccceEEEeeccceeeeccccccccc
Q 005038 461 QLQLLDLSNNNLHGPIPPCFDNTTLHESYSNSSSPDEQFEIFFSIEGHQGFLEKQNHEIFEFTTKNIAYIYQGKVLSLLS 540 (717)
Q Consensus 461 ~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~ 540 (717)
+|+.|++++|++++..+..|..+. +|+
T Consensus 481 ~L~~L~Ls~N~l~~i~~~~~~~l~-----------------------------------------------------~L~ 507 (680)
T 1ziw_A 481 NLTILDLSNNNIANINDDMLEGLE-----------------------------------------------------KLE 507 (680)
T ss_dssp TCCEEECCSSCCCCCCTTTTTTCT-----------------------------------------------------TCC
T ss_pred CCCEEECCCCCCCcCChhhhcccc-----------------------------------------------------ccC
Confidence 888888888888876666665543 566
Q ss_pred eeeCCCCccCCCC--------cccccCCccCCeEeCCCcccCCCCCcCCCCCCCCCEEECCCCcCCccCchhhcCCCCCC
Q 005038 541 GLDLSCNKLIGHI--------PPQIGNLTRIQTLNLSHNNLTGSIPSTFSNLKHVESLDLSNNKLNGKIPHQLVELKTLE 612 (717)
Q Consensus 541 ~L~L~~n~l~~~~--------~~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~N~i~~~~p~~~~~l~~L~ 612 (717)
.|++++|++++.. +..+.++++|++|+|++|+++.+.+..|.++++|++|+|++|++++..+..|..+++|+
T Consensus 508 ~L~Ls~N~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~ 587 (680)
T 1ziw_A 508 ILDLQHNNLARLWKHANPGGPIYFLKGLSHLHILNLESNGFDEIPVEVFKDLFELKIIDLGLNNLNTLPASVFNNQVSLK 587 (680)
T ss_dssp EEECCSSCCGGGGSTTSTTSCCCTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCC
T ss_pred EEeCCCCCccccchhhccCCcchhhcCCCCCCEEECCCCCCCCCCHHHcccccCcceeECCCCCCCcCCHhHhCCCCCCC
Confidence 6666666655321 11255566666666666666644444566666666666666666654455556666666
Q ss_pred EEeccCCcCeecCCCCCc-ccCCCCcccccCCcCCCCCCC-C--------------------CCCCCCCCCCCCCCCCCC
Q 005038 613 VFSVAYNNLSGEIPEWKA-QFATFNESSYEGNTFLCGLPL-P--------------------ICRSPATMPEASIGNEQD 670 (717)
Q Consensus 613 ~L~l~~N~l~~~~p~~~~-~~~~l~~~~~~~n~~~c~~~l-~--------------------~C~~~~~~~~~~~~~~~~ 670 (717)
.|++++|.+++..|..+. .+.+++.+.+.+|||.|+|+. . .|..|...+++++.+.++
T Consensus 588 ~L~L~~N~l~~~~~~~~~~~~~~L~~l~l~~N~~~c~c~~~~~~~~~~~~~~~~~~~~~~~~~C~~p~~~~g~~l~~~~~ 667 (680)
T 1ziw_A 588 SLNLQKNLITSVEKKVFGPAFRNLTELDMRFNPFDCTCESIAWFVNWINETHTNIPELSSHYLCNTPPHYHGFPVRLFDT 667 (680)
T ss_dssp EEECTTSCCCBCCHHHHHHHHTTCSEEECTTCCCCBCCCCCSSEECCSSCC-----------------------------
T ss_pred EEECCCCcCCccChhHhcccccccCEEEccCCCcccCCccHHHHHHHHHhcCcccccccCCcEECCchHHCCCcccccCh
Confidence 666666666655554444 455566666666666666652 1 377777777766666665
Q ss_pred Cccc
Q 005038 671 DNLI 674 (717)
Q Consensus 671 ~~~~ 674 (717)
..+.
T Consensus 668 ~~~~ 671 (680)
T 1ziw_A 668 SSCK 671 (680)
T ss_dssp ----
T ss_pred hhcC
Confidence 5443
No 4
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=100.00 E-value=3.7e-58 Score=521.42 Aligned_cols=596 Identities=21% Similarity=0.230 Sum_probs=479.8
Q ss_pred CCCCCcceeeCcccccCCCCCCeeeCCCCCCCCCcchhccCCCCCCEEeCCCCCCcccCCccccCCCCCCCEEECCCCcc
Q 005038 1 MSSCEVNGVVRSQGLCSLVHLQELYIASNDLRGSLPWCMANMTSLRILDVSSNQLTGSISSSPLVHLTSIEELMLSNNYF 80 (717)
Q Consensus 1 l~~~~~~g~i~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~i~~~~~~~l~~L~~L~L~~n~~ 80 (717)
|++|.+.+ +++.+|.++++|++|++++|.+++..|.+|+++++|++|+|++|.++ .+|..+|.++++|++|++++|.+
T Consensus 32 Ls~n~l~~-~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~-~l~~~~~~~l~~L~~L~L~~n~l 109 (680)
T 1ziw_A 32 LTHNQLRR-LPAANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNELS-QLSDKTFAFCTNLTELHLMSNSI 109 (680)
T ss_dssp CCSSCCCC-CCGGGGGGGTTCSEEECCSSCCCCCCTTHHHHCTTCCEEECCSSCCC-CCCTTTTTTCTTCSEEECCSSCC
T ss_pred CCCCCCCC-cCHHHHhCCCcCcEEECCCCccCccCHHHHhcccCcCEEECCCCccC-ccChhhhccCCCCCEEECCCCcc
Confidence 68899885 55568999999999999999999999999999999999999999998 78876899999999999999999
Q ss_pred cCcCCcccccCCCCCCEEEccCCcccccccccccccCCCccccEEEccCCCCCCCCCchhhc--CCCCCCEEEccCCCCc
Q 005038 81 QIPISLEPLFNYSRLKIFNAENNEIKAEITESHSLIAPKFQLNTLSLSSNYGDGFIFPKFLY--HQHDLEYVDLSHIKMN 158 (717)
Q Consensus 81 ~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~--~~~~L~~L~l~~~~~~ 158 (717)
++ ++...|.++++|++|++++|.+....+.. +..+++|++|++ .++.+.+..+..+. .+++|++|++++|.+.
T Consensus 110 ~~-~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~---~~~l~~L~~L~L-~~n~l~~~~~~~~~~~~~~~L~~L~L~~n~l~ 184 (680)
T 1ziw_A 110 QK-IKNNPFVKQKNLITLDLSHNGLSSTKLGT---QVQLENLQELLL-SNNKIQALKSEELDIFANSSLKKLELSSNQIK 184 (680)
T ss_dssp CC-CCSCTTTTCTTCCEEECCSSCCSCCCCCS---SSCCTTCCEEEC-CSSCCCCBCHHHHGGGTTCEESEEECTTCCCC
T ss_pred Cc-cChhHccccCCCCEEECCCCcccccCchh---hcccccCCEEEc-cCCcccccCHHHhhccccccccEEECCCCccc
Confidence 74 55567999999999999999998765443 466789999999 55556666666554 5689999999999998
Q ss_pred ccCChhhhhCCCCCCEEEccCCcCcccCccCc---CCCCCcCEEEccCCcCCccCCcccccc-CCCCcEEECCCCCCCcc
Q 005038 159 GEFPNWLLENNTKLETLFLVNDSLAGPFRLPI---HSHKRLRQLDVSNNNIRGHIPVKIGDV-LPSLYVFNNSMNALDGS 234 (717)
Q Consensus 159 ~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~---~~~~~L~~L~ls~n~i~~~~~~~~~~~-l~~L~~L~l~~n~~~~~ 234 (717)
+..|.. +..+++|+.+++.++.+.......+ ...++|++|++++|.+++..+..+... .++|++|++++|.+.+.
T Consensus 185 ~~~~~~-~~~l~~L~~L~l~~~~l~~~~~~~~~~~l~~~~L~~L~L~~n~l~~~~~~~~~~l~~~~L~~L~Ls~n~l~~~ 263 (680)
T 1ziw_A 185 EFSPGC-FHAIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQLSTTSNTTFLGLKWTNLTMLDLSYNNLNVV 263 (680)
T ss_dssp CBCTTG-GGGSSEECEEECTTCCCHHHHHHHHHHHHTTSCCCEEECTTSCCCEECTTTTGGGGGSCCCEEECTTSCCCEE
T ss_pred ccChhh-hhhhhhhhhhhccccccChhhHHHHHHHhhhccccEEEccCCcccccChhHhhccCcCCCCEEECCCCCcCcc
Confidence 666655 4789999999999988764322111 134789999999999987666655542 24599999999999988
Q ss_pred CCccccCCCCCCEEEccCCccccccchhhhhCCCCCCEEEccCcccCc---------cCcccccCCCCCCeEECcCCcCc
Q 005038 235 IPSSFGNMKFLQILDLSNNHLTGEIPEHLAVGCVNLQFLALSNNNLQG---------HLFSRNFNLTNLQWLQLEGNRFV 305 (717)
Q Consensus 235 ~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~L~~L~L~~n~i~~---------~~~~~~~~l~~L~~L~L~~n~l~ 305 (717)
.|..+..+++|++|++++|.+.+..|.. +.++++|++|++++|...+ .....|..+++|++|++++|.+.
T Consensus 264 ~~~~~~~l~~L~~L~L~~n~l~~~~~~~-~~~l~~L~~L~L~~~~~~~~~~~~~lp~i~~~~~~~l~~L~~L~l~~n~l~ 342 (680)
T 1ziw_A 264 GNDSFAWLPQLEYFFLEYNNIQHLFSHS-LHGLFNVRYLNLKRSFTKQSISLASLPKIDDFSFQWLKCLEHLNMEDNDIP 342 (680)
T ss_dssp CTTTTTTCTTCCEEECCSCCBSEECTTT-TTTCTTCCEEECTTCBCCC------CCEECTTTTTTCTTCCEEECCSCCBC
T ss_pred CcccccCcccccEeeCCCCccCccChhh-hcCCCCccEEeccchhhhcccccccccccChhhcccCCCCCEEECCCCccC
Confidence 8899999999999999999998544444 4579999999999875442 12236788999999999999999
Q ss_pred ccCcccccCCCCCCEEEccCCcCcC--cCCcccCC--CCCCCEEEccCCcccCCcccccCCCCCCCEEEccCCcCcccCC
Q 005038 306 GEIPQSLSKCSSLEGLYLNNNSLLG--KIPRWLGN--LTRLQYIIMPNNHLEGPIPVEFCQLDSLQILDISDNNISGSLP 381 (717)
Q Consensus 306 ~~~~~~~~~l~~L~~L~L~~n~~~~--~~~~~~~~--l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~ 381 (717)
+..+..|..+++|++|++++|.+.. .....|.. .++|+.|++++|.+.+..+..+..+++|+.|++++|.+.+.++
T Consensus 343 ~~~~~~~~~l~~L~~L~Ls~n~~~~~~l~~~~f~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~ 422 (680)
T 1ziw_A 343 GIKSNMFTGLINLKYLSLSNSFTSLRTLTNETFVSLAHSPLHILNLTKNKISKIESDAFSWLGHLEVLDLGLNEIGQELT 422 (680)
T ss_dssp CCCTTTTTTCTTCCEEECTTCBSCCCEECTTTTGGGTTSCCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCEEECC
T ss_pred CCChhHhccccCCcEEECCCCchhhhhcchhhhcccccCcCceEECCCCCCCeEChhhhhCCCCCCEEeCCCCcCccccC
Confidence 9888899999999999999997542 22223333 3689999999999998889999999999999999999987655
Q ss_pred -Ccc-ccccccEEeccCcccccccCccccCCCCcCCEEeCCCCcCC--cccchhhhCCCCCcEEEcCCCccccccchhcc
Q 005038 382 -SCF-HPLSIKQVHLSKNMLHGQLKRGTFFNCSSLVTLDLSYNRLN--GSIPDWVDGLSQLSHLILGHNNLEGEVSVQLC 457 (717)
Q Consensus 382 -~~~-~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~L~~n~~~--~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~ 457 (717)
..+ ..++|+.|++++|.+.+. ....|..+++|++|++++|.+. +..|..+..+++|+.|++++|++++..+..+.
T Consensus 423 ~~~~~~l~~L~~L~Ls~n~l~~~-~~~~~~~~~~L~~L~l~~n~l~~~~~~p~~~~~l~~L~~L~Ls~N~l~~i~~~~~~ 501 (680)
T 1ziw_A 423 GQEWRGLENIFEIYLSYNKYLQL-TRNSFALVPSLQRLMLRRVALKNVDSSPSPFQPLRNLTILDLSNNNIANINDDMLE 501 (680)
T ss_dssp SGGGTTCTTCCEEECCSCSEEEC-CTTTTTTCTTCCEEECTTSCCBCTTCSSCTTTTCTTCCEEECCSSCCCCCCTTTTT
T ss_pred cccccCcccccEEecCCCCccee-ChhhhhcCcccccchhccccccccccCCcccccCCCCCEEECCCCCCCcCChhhhc
Confidence 333 478999999999998654 4445899999999999999986 46788899999999999999999988888899
Q ss_pred CCCCCCEEEccCCcCccCCCcccccccccccccCCCCCCcchhhhhhcccccccccccccceEEEeeccceeeecccccc
Q 005038 458 ELNQLQLLDLSNNNLHGPIPPCFDNTTLHESYSNSSSPDEQFEIFFSIEGHQGFLEKQNHEIFEFTTKNIAYIYQGKVLS 537 (717)
Q Consensus 458 ~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 537 (717)
.+++|++|++++|++++..+..+.... ......++
T Consensus 502 ~l~~L~~L~Ls~N~l~~~~~~~~~~~~---------------------------------------------~~~~~~l~ 536 (680)
T 1ziw_A 502 GLEKLEILDLQHNNLARLWKHANPGGP---------------------------------------------IYFLKGLS 536 (680)
T ss_dssp TCTTCCEEECCSSCCGGGGSTTSTTSC---------------------------------------------CCTTTTCT
T ss_pred cccccCEEeCCCCCccccchhhccCCc---------------------------------------------chhhcCCC
Confidence 999999999999999865433221110 00012245
Q ss_pred ccceeeCCCCccCCCCcccccCCccCCeEeCCCcccCCCCCcCCCCCCCCCEEECCCCcCCccCchhhc-CCCCCCEEec
Q 005038 538 LLSGLDLSCNKLIGHIPPQIGNLTRIQTLNLSHNNLTGSIPSTFSNLKHVESLDLSNNKLNGKIPHQLV-ELKTLEVFSV 616 (717)
Q Consensus 538 ~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~N~i~~~~p~~~~-~l~~L~~L~l 616 (717)
+|+.|+|++|+++...+..|.++++|++|+|++|+++++.+..|.++++|++|+|++|++++..|..+. .+++|+.|++
T Consensus 537 ~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~L~~l~l 616 (680)
T 1ziw_A 537 HLHILNLESNGFDEIPVEVFKDLFELKIIDLGLNNLNTLPASVFNNQVSLKSLNLQKNLITSVEKKVFGPAFRNLTELDM 616 (680)
T ss_dssp TCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECTTSCCCBCCHHHHHHHHTTCSEEEC
T ss_pred CCCEEECCCCCCCCCCHHHcccccCcceeECCCCCCCcCCHhHhCCCCCCCEEECCCCcCCccChhHhcccccccCEEEc
Confidence 899999999999966666799999999999999999988778899999999999999999988888887 7899999999
Q ss_pred cCCcCeecCC--CCCcccCCCCccccc--CCcCCCCCCC
Q 005038 617 AYNNLSGEIP--EWKAQFATFNESSYE--GNTFLCGLPL 651 (717)
Q Consensus 617 ~~N~l~~~~p--~~~~~~~~l~~~~~~--~n~~~c~~~l 651 (717)
++|++.|.++ .|+..|..-....+. .....|..|.
T Consensus 617 ~~N~~~c~c~~~~~~~~~~~~~~~~~~~~~~~~~C~~p~ 655 (680)
T 1ziw_A 617 RFNPFDCTCESIAWFVNWINETHTNIPELSSHYLCNTPP 655 (680)
T ss_dssp TTCCCCBCCCCCSSEECCSSCC-----------------
T ss_pred cCCCcccCCccHHHHHHHHHhcCcccccccCCcEECCch
Confidence 9999999887 566665433322232 2456787764
No 5
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=100.00 E-value=2.5e-57 Score=523.77 Aligned_cols=582 Identities=21% Similarity=0.178 Sum_probs=397.6
Q ss_pred CCCCcceeeCcccccCCCCCCeeeCCCCCCCCCcchhccCCCCCCEEeCCCCCCcccCCccccCCCCCCCEEECCCCccc
Q 005038 2 SSCEVNGVVRSQGLCSLVHLQELYIASNDLRGSLPWCMANMTSLRILDVSSNQLTGSISSSPLVHLTSIEELMLSNNYFQ 81 (717)
Q Consensus 2 ~~~~~~g~i~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~i~~~~~~~l~~L~~L~L~~n~~~ 81 (717)
++++++ .||. -.++|++|||++|.+++..|..|.++++|++|||++|...+.+++.+|.++++|++|+|++|.++
T Consensus 12 s~~~L~-~vP~----lp~~l~~LdLs~N~i~~i~~~~~~~l~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls~N~l~ 86 (844)
T 3j0a_A 12 RFCNLT-QVPQ----VLNTTERLLLSFNYIRTVTASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSSKIY 86 (844)
T ss_dssp SCCCSS-CCCS----SCTTCCEEEEESCCCCEECSSSCSSCCSCSEEEECTTCCCCEECTTTTSSCTTCCEEECTTCCCC
T ss_pred cCCCCC-CCCC----CCCCcCEEECCCCcCCccChhHCcccccCeEEeCCCCCCccccCHHHhcCCCCCCEEECCCCcCc
Confidence 456666 6773 45799999999999998889999999999999999997766886668999999999999999998
Q ss_pred CcCCcccccCCCCCCEEEccCCcccccccccccccCCCccccEEEccCCCCCCCCCchhhcCCCCCCEEEccCCCCcccC
Q 005038 82 IPISLEPLFNYSRLKIFNAENNEIKAEITESHSLIAPKFQLNTLSLSSNYGDGFIFPKFLYHQHDLEYVDLSHIKMNGEF 161 (717)
Q Consensus 82 ~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~ 161 (717)
+. ....|.++++|++|++++|.+.+..+.. ..+..+++|++|+++.|.......+..++++++|++|++++|.+.+..
T Consensus 87 ~~-~p~~~~~l~~L~~L~Ls~n~l~~~~~~~-~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~L~~L~~L~Ls~N~i~~~~ 164 (844)
T 3j0a_A 87 FL-HPDAFQGLFHLFELRLYFCGLSDAVLKD-GYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLVC 164 (844)
T ss_dssp EE-CTTSSCSCSSCCCEECTTCCCSSCCSTT-CCCSSCSSCCEEEEESCCCCCCCCCGGGGTCSSCCEEEEESSCCCCCC
T ss_pred cc-CHhHccCCcccCEeeCcCCCCCcccccC-ccccccCCCCEEECCCCcccccccchhHhhCCCCCEEECCCCcCCeeC
Confidence 54 3467999999999999999887643322 124566788888885544333233467788888888888888877666
Q ss_pred ChhhhhCC--CCCCEEEccCCcCcccCccCcCCCCC------cCEEEccCCcCCccCCccccccC--CCCcEEECCCCCC
Q 005038 162 PNWLLENN--TKLETLFLVNDSLAGPFRLPIHSHKR------LRQLDVSNNNIRGHIPVKIGDVL--PSLYVFNNSMNAL 231 (717)
Q Consensus 162 ~~~~~~~~--~~L~~L~l~~n~~~~~~~~~~~~~~~------L~~L~ls~n~i~~~~~~~~~~~l--~~L~~L~l~~n~~ 231 (717)
+..+ ..+ ++|+.|++++|.+.+..+..+..+.+ |++|++++|.+++..+..+.... ..++.+.++.+..
T Consensus 165 ~~~l-~~l~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~~l~~L~l~~~~~ 243 (844)
T 3j0a_A 165 EHEL-EPLQGKTLSFFSLAANSLYSRVSVDWGKCMNPFRNMVLEILDVSGNGWTVDITGNFSNAISKSQAFSLILAHHIM 243 (844)
T ss_dssp SGGG-HHHHHCSSCCCEECCSBSCCCCCCCCCSSSCTTTTCCBSEEBCSSCCSSTTTTSGGGGTSCSCCBSEEECCSSCC
T ss_pred HHHc-ccccCCccceEECCCCccccccccchhhcCCccccCceeEEecCCCcCchhHHHHHHhhcCcccccceecccccc
Confidence 6554 344 67888888888887766666655554 77888888777766666555432 3455555553322
Q ss_pred CccCCccccCCCCCCEEEccCCccccccchhhhhC--CCCCCEEEccCcccCccCcccccCCCCCCeEECcCCcCcccCc
Q 005038 232 DGSIPSSFGNMKFLQILDLSNNHLTGEIPEHLAVG--CVNLQFLALSNNNLQGHLFSRNFNLTNLQWLQLEGNRFVGEIP 309 (717)
Q Consensus 232 ~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~--~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~ 309 (717)
.. .+..+.+. ......+.+ .++|++|++++|.+.+..+..+..+++|++|++++|.+.+..+
T Consensus 244 ~~---------------~~~~~~l~-~~~~~~f~~l~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~ 307 (844)
T 3j0a_A 244 GA---------------GFGFHNIK-DPDQNTFAGLARSSVRHLDLSHGFVFSLNSRVFETLKDLKVLNLAYNKINKIAD 307 (844)
T ss_dssp BC---------------SSSCSSST-TGGGTTTTTTTTSCCCEEECTTCCCCEECSCCSSSCCCCCEEEEESCCCCEECT
T ss_pred cc---------------cccccccC-CCChhhhhccccCCccEEECCCCcccccChhhhhcCCCCCEEECCCCcCCCCCh
Confidence 11 01122333 122222223 3678888888888887777888888888888888888887777
Q ss_pred ccccCCCCCCEEEccCCcCcCcCCcccCCCCCCCEEEccCCcccCCcccccCCCCCCCEEEccCCcCcccCCCccccccc
Q 005038 310 QSLSKCSSLEGLYLNNNSLLGKIPRWLGNLTRLQYIIMPNNHLEGPIPVEFCQLDSLQILDISDNNISGSLPSCFHPLSI 389 (717)
Q Consensus 310 ~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~L 389 (717)
..|..+++|++|++++|.+.+..+..|..+++|+.|++++|.+.+..+..|..+++|++|++++|.+.+... .++|
T Consensus 308 ~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~----~~~L 383 (844)
T 3j0a_A 308 EAFYGLDNLQVLNLSYNLLGELYSSNFYGLPKVAYIDLQKNHIAIIQDQTFKFLEKLQTLDLRDNALTTIHF----IPSI 383 (844)
T ss_dssp TTTTTCSSCCEEEEESCCCSCCCSCSCSSCTTCCEEECCSCCCCCCCSSCSCSCCCCCEEEEETCCSCCCSS----CCSC
T ss_pred HHhcCCCCCCEEECCCCCCCccCHHHhcCCCCCCEEECCCCCCCccChhhhcCCCCCCEEECCCCCCCcccC----CCCc
Confidence 788888888888888888887777788888888888888888887777778888888888888888764322 5567
Q ss_pred cEEeccCcccccccCccccCCCCcCCEEeCCCCcCCcccc-hhhhCCCCCcEEEcCCCccccccch-hccCCCCCCEEEc
Q 005038 390 KQVHLSKNMLHGQLKRGTFFNCSSLVTLDLSYNRLNGSIP-DWVDGLSQLSHLILGHNNLEGEVSV-QLCELNQLQLLDL 467 (717)
Q Consensus 390 ~~L~l~~n~~~~~~~~~~~~~~~~L~~L~L~~n~~~~~~~-~~~~~l~~L~~L~L~~n~l~~~~~~-~l~~l~~L~~L~L 467 (717)
+.+++++|.+. .++.. ..+++.|++++|++.+... ..+..+++|+.|++++|++++..+. .+..+++|+.|++
T Consensus 384 ~~L~l~~N~l~-~l~~~----~~~l~~L~ls~N~l~~l~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~L~~L~L 458 (844)
T 3j0a_A 384 PDIFLSGNKLV-TLPKI----NLTANLIHLSENRLENLDILYFLLRVPHLQILILNQNRFSSCSGDQTPSENPSLEQLFL 458 (844)
T ss_dssp SEEEEESCCCC-CCCCC----CTTCCEEECCSCCCCSSTTHHHHTTCTTCCEEEEESCCCCCCCSSSSSCSCTTCCBCEE
T ss_pred chhccCCCCcc-ccccc----ccccceeecccCccccCchhhhhhcCCccceeeCCCCcccccccccccccCCccccccC
Confidence 77777777764 33322 3567778888877775322 2345677778888877777754432 3455677777777
Q ss_pred cCCcCccCCCcccccccccccccCCCCCCcchhhhhhcccccccccccccceEEEeeccceeeeccccccccceeeCCCC
Q 005038 468 SNNNLHGPIPPCFDNTTLHESYSNSSSPDEQFEIFFSIEGHQGFLEKQNHEIFEFTTKNIAYIYQGKVLSLLSGLDLSCN 547 (717)
Q Consensus 468 ~~n~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n 547 (717)
++|.+++..+...... ....++.|+.|+|++|
T Consensus 459 s~N~l~~~~~~~~~~~------------------------------------------------~~~~l~~L~~L~Ls~N 490 (844)
T 3j0a_A 459 GENMLQLAWETELCWD------------------------------------------------VFEGLSHLQVLYLNHN 490 (844)
T ss_dssp ESCCCSSSCCSCCCSS------------------------------------------------CSSCBCCEECCCCCHH
T ss_pred CCCccccccccccchh------------------------------------------------hhcCcccccEEECCCC
Confidence 7777753322110000 0011346777777777
Q ss_pred ccCCCCcccccCCccCCeEeCCCcccCCCCCcCCCCCCCCCEEECCCCcCCccCchhhcCCCCCCEEeccCCcCeecCCC
Q 005038 548 KLIGHIPPQIGNLTRIQTLNLSHNNLTGSIPSTFSNLKHVESLDLSNNKLNGKIPHQLVELKTLEVFSVAYNNLSGEIPE 627 (717)
Q Consensus 548 ~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~N~i~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~ 627 (717)
++++..|..|.++++|++|+|++|++++..|..+. ++|+.|+|++|++++..|+.+ .+|+.|++++|++.|.++.
T Consensus 491 ~l~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~--~~L~~L~Ls~N~l~~~~~~~~---~~L~~l~l~~Np~~C~c~~ 565 (844)
T 3j0a_A 491 YLNSLPPGVFSHLTALRGLSLNSNRLTVLSHNDLP--ANLEILDISRNQLLAPNPDVF---VSLSVLDITHNKFICECEL 565 (844)
T ss_dssp HHTTCCTTSSSSCCSCSEEEEESCCCSSCCCCCCC--SCCCEEEEEEECCCCCCSCCC---SSCCEEEEEEECCCCSSSC
T ss_pred cccccChhHccchhhhheeECCCCCCCccChhhhh--ccccEEECCCCcCCCCChhHh---CCcCEEEecCCCccccccc
Confidence 77766666677777777777777777765555554 677777777777776666544 3566777777777765542
Q ss_pred CCcccCCCCcccccCCcCCCCCCCCC-CCCCCCCCCCCCCCCCCCccc
Q 005038 628 WKAQFATFNESSYEGNTFLCGLPLPI-CRSPATMPEASIGNEQDDNLI 674 (717)
Q Consensus 628 ~~~~~~~l~~~~~~~n~~~c~~~l~~-C~~~~~~~~~~~~~~~~~~~~ 674 (717)
..|..+....+...|+.+... |..|....+.++.+.....|.
T Consensus 566 -----~~f~~~~~~~~~~~~~~~~~~~C~~p~~~~g~~l~~~~~~~C~ 608 (844)
T 3j0a_A 566 -----STFINWLNHTNVTIAGPPADIYCVYPDSFSGVSLFSLSTEGCD 608 (844)
T ss_dssp -----CSHHHHHHHTTTTTCCCGGGCCCSSCSSSCSCCTTTCCCCCC-
T ss_pred -----HHHHHHHHhcCcccccccccCccCCchhhCCCccccCccccCC
Confidence 122222233445555554443 999998888777666555554
No 6
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=100.00 E-value=6.6e-55 Score=488.17 Aligned_cols=566 Identities=20% Similarity=0.179 Sum_probs=329.1
Q ss_pred CcceeeCcccccCCCCCCeeeCCCCCCCCCcchhccCCCCCCEEeCCCCCCcccCCccccCCCCCCCEEECCCCcccCcC
Q 005038 5 EVNGVVRSQGLCSLVHLQELYIASNDLRGSLPWCMANMTSLRILDVSSNQLTGSISSSPLVHLTSIEELMLSNNYFQIPI 84 (717)
Q Consensus 5 ~~~g~i~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~i~~~~~~~l~~L~~L~L~~n~~~~~~ 84 (717)
+++ +||. .+. +++++|++++|.+++..|.+|+++++|++|+|++|.+. .+++.+|.++++|++|++++|.+++.
T Consensus 23 ~l~-~iP~-~l~--~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~-~~~~~~~~~l~~L~~L~Ls~n~l~~~- 96 (606)
T 3t6q_A 23 GLN-EIPG-TLP--NSTECLEFSFNVLPTIQNTTFSRLINLTFLDLTRCQIY-WIHEDTFQSQHRLDTLVLTANPLIFM- 96 (606)
T ss_dssp CCS-SCCT-TSC--TTCCEEECTTCCCSEECTTTSTTCTTCSEEECTTCCCC-EECTTTTTTCTTCCEEECTTCCCSEE-
T ss_pred Ccc-cCcC-CCC--CcCcEEEccCCccCcCChhHhccCccceEEECCCCccc-eeChhhccCccccCeeeCCCCccccc-
Confidence 344 5553 333 26888888888888777888888888888888888887 44433788888888888888888743
Q ss_pred CcccccCCCCCCEEEccCCcccccccccccccCCCccccEEEccCCCCCCC-CCchhhcCCCCCCEEEccCCCCcccCCh
Q 005038 85 SLEPLFNYSRLKIFNAENNEIKAEITESHSLIAPKFQLNTLSLSSNYGDGF-IFPKFLYHQHDLEYVDLSHIKMNGEFPN 163 (717)
Q Consensus 85 ~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~-~~~~~l~~~~~L~~L~l~~~~~~~~~~~ 163 (717)
....++++++|++|++++|.++...+.. +..+++|++|++++| .+.+ ..|..+ .+++|++|++++|.+++..+.
T Consensus 97 ~~~~~~~l~~L~~L~L~~n~i~~l~~~~---~~~l~~L~~L~L~~n-~l~~~~~~~~~-~l~~L~~L~L~~n~l~~~~~~ 171 (606)
T 3t6q_A 97 AETALSGPKALKHLFFIQTGISSIDFIP---LHNQKTLESLYLGSN-HISSIKLPKGF-PTEKLKVLDFQNNAIHYLSKE 171 (606)
T ss_dssp CTTTTSSCTTCCEEECTTSCCSCGGGSC---CTTCTTCCEEECCSS-CCCCCCCCTTC-CCTTCCEEECCSSCCCEECHH
T ss_pred ChhhhcccccccEeeccccCcccCCcch---hccCCcccEEECCCC-cccccCccccc-CCcccCEEEcccCcccccChh
Confidence 3356788888888888888877543332 344556666666333 3333 223332 366666666666666533333
Q ss_pred hhhhCCCCCC--EEEccCCcCcccCccCcCCCCCcCEEEccCCcCCccCCccccccCCCCcEEECCCCCCCccCCccccC
Q 005038 164 WLLENNTKLE--TLFLVNDSLAGPFRLPIHSHKRLRQLDVSNNNIRGHIPVKIGDVLPSLYVFNNSMNALDGSIPSSFGN 241 (717)
Q Consensus 164 ~~~~~~~~L~--~L~l~~n~~~~~~~~~~~~~~~L~~L~ls~n~i~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~ 241 (717)
. +..+++|+ .|++++|.+.+..+..+.. .+|++|++++|... +. ....+..+....+....+.
T Consensus 172 ~-~~~l~~L~~l~L~l~~n~l~~~~~~~~~~-~~L~~L~l~~~~~~---~~-~~~~l~~~~l~~l~~~~~~--------- 236 (606)
T 3t6q_A 172 D-MSSLQQATNLSLNLNGNDIAGIEPGAFDS-AVFQSLNFGGTQNL---LV-IFKGLKNSTIQSLWLGTFE--------- 236 (606)
T ss_dssp H-HHTTTTCCSEEEECTTCCCCEECTTTTTT-CEEEEEECTTCSCH---HH-HHHHTTTCEEEEEECCCCT---------
T ss_pred h-hhhhcccceeEEecCCCccCccChhHhhh-ccccccccCCchhH---HH-Hhhhccccchhheechhhc---------
Confidence 3 35566666 5666666666554444333 45666666655411 11 1111222222211111110
Q ss_pred CCCCCEEEccCCccccccchhhhhCCC--CCCEEEccCcccCccCcccccCCCCCCeEECcCCcCcccCcccccCCCCCC
Q 005038 242 MKFLQILDLSNNHLTGEIPEHLAVGCV--NLQFLALSNNNLQGHLFSRNFNLTNLQWLQLEGNRFVGEIPQSLSKCSSLE 319 (717)
Q Consensus 242 l~~L~~L~Ls~n~l~~~~~~~~~~~~~--~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~ 319 (717)
.+ ... .++...+.++. +|++|++++|.+.+..+..|..+++|++|++++|.+. .+|..+..+++|+
T Consensus 237 --~~--------~~~-~i~~~~~~~l~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~-~lp~~l~~l~~L~ 304 (606)
T 3t6q_A 237 --DM--------DDE-DISPAVFEGLCEMSVESINLQKHYFFNISSNTFHCFSGLQELDLTATHLS-ELPSGLVGLSTLK 304 (606)
T ss_dssp --TS--------CCC-CCCGGGGGGGGGSEEEEEECTTCCCSSCCTTTTTTCTTCSEEECTTSCCS-CCCSSCCSCTTCC
T ss_pred --cc--------ccc-ccChhHhchhhcCceeEEEeecCccCccCHHHhccccCCCEEeccCCccC-CCChhhcccccCC
Confidence 00 000 11122222221 4555555555555555555555555555555555555 3444555555555
Q ss_pred EEEccCCcCcCcCCcccCCCCCCCEEEccCCcccCCcc-cccCCCCCCCEEEccCCcCcccC--CCc-cccccccEEecc
Q 005038 320 GLYLNNNSLLGKIPRWLGNLTRLQYIIMPNNHLEGPIP-VEFCQLDSLQILDISDNNISGSL--PSC-FHPLSIKQVHLS 395 (717)
Q Consensus 320 ~L~L~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~-~~~~~l~~L~~L~l~~n~~~~~~--~~~-~~~~~L~~L~l~ 395 (717)
+|++++|.+.+..|..+..+++|+.|++++|.+.+..+ ..+..+++|++|++++|.+.+.. +.. ...++|+.|+++
T Consensus 305 ~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~ 384 (606)
T 3t6q_A 305 KLVLSANKFENLCQISASNFPSLTHLSIKGNTKRLELGTGCLENLENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLS 384 (606)
T ss_dssp EEECTTCCCSBGGGGCGGGCTTCSEEECCSCSSCCBCCSSTTTTCTTCCEEECCSSCCCEEEESTTTTTTCTTCCEEECC
T ss_pred EEECccCCcCcCchhhhhccCcCCEEECCCCCcccccchhhhhccCcCCEEECCCCccccccCcchhcccCCCCCEEECC
Confidence 55555555554445555555555555555555543332 23555555555555555554332 211 123444444444
Q ss_pred CcccccccCccccCCCCcCCEEeCCCCcCCcccch-hhhCCCCCcEEEcCCCccccccchhccCCCCCCEEEccCCcCcc
Q 005038 396 KNMLHGQLKRGTFFNCSSLVTLDLSYNRLNGSIPD-WVDGLSQLSHLILGHNNLEGEVSVQLCELNQLQLLDLSNNNLHG 474 (717)
Q Consensus 396 ~n~~~~~~~~~~~~~~~~L~~L~L~~n~~~~~~~~-~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~ 474 (717)
+|.+.+..+ ..|..+++|++|++++|.+.+..+. .+..+++|++|++++|.+++..+..+..+++|++|++++|++.+
T Consensus 385 ~n~l~~~~~-~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~ 463 (606)
T 3t6q_A 385 YNEPLSLKT-EAFKECPQLELLDLAFTRLKVKDAQSPFQNLHLLKVLNLSHSLLDISSEQLFDGLPALQHLNLQGNHFPK 463 (606)
T ss_dssp SCSCEEECT-TTTTTCTTCSEEECTTCCEECCTTCCTTTTCTTCCEEECTTCCCBTTCTTTTTTCTTCCEEECTTCBCGG
T ss_pred CCcCCcCCH-HHhcCCccCCeEECCCCcCCCcccchhhhCcccCCEEECCCCccCCcCHHHHhCCCCCCEEECCCCCCCc
Confidence 444433222 2366777788888888777655443 46777788888888888777777777777888888888877764
Q ss_pred CC-C--cccccccccccccCCCCCCcchhhhhhcccccccccccccceEEEeeccceeeeccccccccceeeCCCCccCC
Q 005038 475 PI-P--PCFDNTTLHESYSNSSSPDEQFEIFFSIEGHQGFLEKQNHEIFEFTTKNIAYIYQGKVLSLLSGLDLSCNKLIG 551 (717)
Q Consensus 475 ~~-~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~ 551 (717)
.. + ..+. .+++|+.|++++|++++
T Consensus 464 ~~~~~~~~~~-----------------------------------------------------~l~~L~~L~Ls~n~l~~ 490 (606)
T 3t6q_A 464 GNIQKTNSLQ-----------------------------------------------------TLGRLEILVLSFCDLSS 490 (606)
T ss_dssp GEECSSCGGG-----------------------------------------------------GCTTCCEEECTTSCCCE
T ss_pred cccccchhhc-----------------------------------------------------cCCCccEEECCCCccCc
Confidence 21 1 1121 13467777777777777
Q ss_pred CCcccccCCccCCeEeCCCcccCCCCCcCCCCCCCCCEEECCCCcCCccCchhhcCCCCCCEEeccCCcCeecCCC-CCc
Q 005038 552 HIPPQIGNLTRIQTLNLSHNNLTGSIPSTFSNLKHVESLDLSNNKLNGKIPHQLVELKTLEVFSVAYNNLSGEIPE-WKA 630 (717)
Q Consensus 552 ~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~N~i~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~-~~~ 630 (717)
..|..|..+++|++|+|++|++++..|..+.++++| +|++++|++++..|+.+..+++|+.|++++|++.|.++. |+.
T Consensus 491 ~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L-~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~c~~~~~~ 569 (606)
T 3t6q_A 491 IDQHAFTSLKMMNHVDLSHNRLTSSSIEALSHLKGI-YLNLASNHISIILPSLLPILSQQRTINLRQNPLDCTCSNIYFL 569 (606)
T ss_dssp ECTTTTTTCTTCCEEECCSSCCCGGGGGGGTTCCSC-EEECCSSCCCCCCGGGHHHHHTSSEEECTTCCEECSGGGHHHH
T ss_pred cChhhhccccCCCEEECCCCccCcCChhHhCccccc-EEECcCCcccccCHhhcccCCCCCEEeCCCCCccccCCcHHHH
Confidence 777777777777777777777777777777777777 777777777777777777777777777777777776552 111
Q ss_pred ccCCCCcccccCCcCCCCCCCCCCCCCCCCCCCCCCCCC
Q 005038 631 QFATFNESSYEGNTFLCGLPLPICRSPATMPEASIGNEQ 669 (717)
Q Consensus 631 ~~~~l~~~~~~~n~~~c~~~l~~C~~~~~~~~~~~~~~~ 669 (717)
.|..-....+. +.....|..|...++.++.+.+
T Consensus 570 ~w~~~~~~~~~------~~~~~~C~~p~~~~g~~l~~~~ 602 (606)
T 3t6q_A 570 EWYKENMQKLE------DTEDTLCENPPLLRGVRLSDVT 602 (606)
T ss_dssp HHHHHCGGGEE------CGGGCBEEESGGGTTCBGGGCC
T ss_pred HHHHhCccccc------CCCCCeeCCchHhCCCeeeeee
Confidence 11100000000 0111248888888777665554
No 7
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=100.00 E-value=5.3e-53 Score=472.75 Aligned_cols=511 Identities=21% Similarity=0.221 Sum_probs=392.4
Q ss_pred CCCCCcceeeCcccccCCCCCCeeeCCCCCCCCCcchhccCCCCCCEEeCCCCCCcccCCccccCCCCCCCEEECCCCcc
Q 005038 1 MSSCEVNGVVRSQGLCSLVHLQELYIASNDLRGSLPWCMANMTSLRILDVSSNQLTGSISSSPLVHLTSIEELMLSNNYF 80 (717)
Q Consensus 1 l~~~~~~g~i~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~i~~~~~~~l~~L~~L~L~~n~~ 80 (717)
|++|.+++ +++.+|+++++|++|++++|.+.++.|.+|+++++|++|+|++|.+++..|. +|+++++|++|++++|.+
T Consensus 40 Ls~n~i~~-~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~-~~~~l~~L~~L~L~~n~i 117 (606)
T 3t6q_A 40 FSFNVLPT-IQNTTFSRLINLTFLDLTRCQIYWIHEDTFQSQHRLDTLVLTANPLIFMAET-ALSGPKALKHLFFIQTGI 117 (606)
T ss_dssp CTTCCCSE-ECTTTSTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCSEECTT-TTSSCTTCCEEECTTSCC
T ss_pred ccCCccCc-CChhHhccCccceEEECCCCccceeChhhccCccccCeeeCCCCcccccChh-hhcccccccEeeccccCc
Confidence 68899985 5447999999999999999999988899999999999999999999844454 899999999999999999
Q ss_pred cCcCCcccccCCCCCCEEEccCCcccccccccccccCCCccccEEEccCCCCCCCCCchhhcCCCCCC--EEEccCCCCc
Q 005038 81 QIPISLEPLFNYSRLKIFNAENNEIKAEITESHSLIAPKFQLNTLSLSSNYGDGFIFPKFLYHQHDLE--YVDLSHIKMN 158 (717)
Q Consensus 81 ~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~--~L~l~~~~~~ 158 (717)
++ ++...+.++++|++|++++|.+....... +..+++|++|++ .++.+.+..+..+..+++|+ .|++++|.+.
T Consensus 118 ~~-l~~~~~~~l~~L~~L~L~~n~l~~~~~~~---~~~l~~L~~L~L-~~n~l~~~~~~~~~~l~~L~~l~L~l~~n~l~ 192 (606)
T 3t6q_A 118 SS-IDFIPLHNQKTLESLYLGSNHISSIKLPK---GFPTEKLKVLDF-QNNAIHYLSKEDMSSLQQATNLSLNLNGNDIA 192 (606)
T ss_dssp SC-GGGSCCTTCTTCCEEECCSSCCCCCCCCT---TCCCTTCCEEEC-CSSCCCEECHHHHHTTTTCCSEEEECTTCCCC
T ss_pred cc-CCcchhccCCcccEEECCCCcccccCccc---ccCCcccCEEEc-ccCcccccChhhhhhhcccceeEEecCCCccC
Confidence 85 33356899999999999999998643322 344779999999 55666667788899999999 9999999999
Q ss_pred ccCChhhhhCCCCCCEEEccCCcCcccCccCcCCCCCcCEEEccCCcCCc----cCCccccccCC--CCcEEECCCCCCC
Q 005038 159 GEFPNWLLENNTKLETLFLVNDSLAGPFRLPIHSHKRLRQLDVSNNNIRG----HIPVKIGDVLP--SLYVFNNSMNALD 232 (717)
Q Consensus 159 ~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~ls~n~i~~----~~~~~~~~~l~--~L~~L~l~~n~~~ 232 (717)
+..|..+ ....|+.|++++|... +..+..+.+++...+....+.+ .++...+..+. +++.+++++|.+.
T Consensus 193 ~~~~~~~--~~~~L~~L~l~~~~~~---~~~~~~l~~~~l~~l~~~~~~~~~~~~i~~~~~~~l~~~~L~~L~l~~n~l~ 267 (606)
T 3t6q_A 193 GIEPGAF--DSAVFQSLNFGGTQNL---LVIFKGLKNSTIQSLWLGTFEDMDDEDISPAVFEGLCEMSVESINLQKHYFF 267 (606)
T ss_dssp EECTTTT--TTCEEEEEECTTCSCH---HHHHHHTTTCEEEEEECCCCTTSCCCCCCGGGGGGGGGSEEEEEECTTCCCS
T ss_pred ccChhHh--hhccccccccCCchhH---HHHhhhccccchhheechhhccccccccChhHhchhhcCceeEEEeecCccC
Confidence 7666553 4578999999998632 2333344444333332222211 22222222222 5677777777777
Q ss_pred ccCCccccCCCCCCEEEccCCccccccchhhhhCCCCCCEEEccCcccCccCcccccCCCCCCeEECcCCcCcccCc-cc
Q 005038 233 GSIPSSFGNMKFLQILDLSNNHLTGEIPEHLAVGCVNLQFLALSNNNLQGHLFSRNFNLTNLQWLQLEGNRFVGEIP-QS 311 (717)
Q Consensus 233 ~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~-~~ 311 (717)
+..+..|..+++|++|++++|.++ .+|..+. .+++|++|++++|.+.+..+..+..+++|++|++++|.+.+..+ ..
T Consensus 268 ~~~~~~~~~l~~L~~L~l~~n~l~-~lp~~l~-~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~ 345 (606)
T 3t6q_A 268 NISSNTFHCFSGLQELDLTATHLS-ELPSGLV-GLSTLKKLVLSANKFENLCQISASNFPSLTHLSIKGNTKRLELGTGC 345 (606)
T ss_dssp SCCTTTTTTCTTCSEEECTTSCCS-CCCSSCC-SCTTCCEEECTTCCCSBGGGGCGGGCTTCSEEECCSCSSCCBCCSST
T ss_pred ccCHHHhccccCCCEEeccCCccC-CCChhhc-ccccCCEEECccCCcCcCchhhhhccCcCCEEECCCCCcccccchhh
Confidence 666666777777777777777776 6666543 46777777777777776666666677777777777776664443 34
Q ss_pred ccCCCCCCEEEccCCcCcCcC--CcccCCCCCCCEEEccCCcccCCcccccCCCCCCCEEEccCCcCcccCCCccccccc
Q 005038 312 LSKCSSLEGLYLNNNSLLGKI--PRWLGNLTRLQYIIMPNNHLEGPIPVEFCQLDSLQILDISDNNISGSLPSCFHPLSI 389 (717)
Q Consensus 312 ~~~l~~L~~L~L~~n~~~~~~--~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~L 389 (717)
+..+++|++|++++|.+.+.. +..+..+++|+.|++++|.+.+..+..+..+++|++|++++|++.
T Consensus 346 ~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~------------ 413 (606)
T 3t6q_A 346 LENLENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFTRLK------------ 413 (606)
T ss_dssp TTTCTTCCEEECCSSCCCEEEESTTTTTTCTTCCEEECCSCSCEEECTTTTTTCTTCSEEECTTCCEE------------
T ss_pred hhccCcCCEEECCCCccccccCcchhcccCCCCCEEECCCCcCCcCCHHHhcCCccCCeEECCCCcCC------------
Confidence 666777777777777666443 555666667777777776666666666666666666666666654
Q ss_pred cEEeccCcccccccCccccCCCCcCCEEeCCCCcCCcccchhhhCCCCCcEEEcCCCccccc---cchhccCCCCCCEEE
Q 005038 390 KQVHLSKNMLHGQLKRGTFFNCSSLVTLDLSYNRLNGSIPDWVDGLSQLSHLILGHNNLEGE---VSVQLCELNQLQLLD 466 (717)
Q Consensus 390 ~~L~l~~n~~~~~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~---~~~~l~~l~~L~~L~ 466 (717)
+..+...+..+++|++|++++|.+.+..|..+..+++|++|++++|++++. .+..+..+++|+.|+
T Consensus 414 -----------~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~l~~L~~L~ 482 (606)
T 3t6q_A 414 -----------VKDAQSPFQNLHLLKVLNLSHSLLDISSEQLFDGLPALQHLNLQGNHFPKGNIQKTNSLQTLGRLEILV 482 (606)
T ss_dssp -----------CCTTCCTTTTCTTCCEEECTTCCCBTTCTTTTTTCTTCCEEECTTCBCGGGEECSSCGGGGCTTCCEEE
T ss_pred -----------CcccchhhhCcccCCEEECCCCccCCcCHHHHhCCCCCCEEECCCCCCCccccccchhhccCCCccEEE
Confidence 333444478899999999999999988899999999999999999999863 235688999999999
Q ss_pred ccCCcCccCCCcccccccccccccCCCCCCcchhhhhhcccccccccccccceEEEeeccceeeeccccccccceeeCCC
Q 005038 467 LSNNNLHGPIPPCFDNTTLHESYSNSSSPDEQFEIFFSIEGHQGFLEKQNHEIFEFTTKNIAYIYQGKVLSLLSGLDLSC 546 (717)
Q Consensus 467 L~~n~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~ 546 (717)
+++|++++..|..|..++ .|+.|++++
T Consensus 483 Ls~n~l~~~~~~~~~~l~-----------------------------------------------------~L~~L~Ls~ 509 (606)
T 3t6q_A 483 LSFCDLSSIDQHAFTSLK-----------------------------------------------------MMNHVDLSH 509 (606)
T ss_dssp CTTSCCCEECTTTTTTCT-----------------------------------------------------TCCEEECCS
T ss_pred CCCCccCccChhhhcccc-----------------------------------------------------CCCEEECCC
Confidence 999999988887776544 799999999
Q ss_pred CccCCCCcccccCCccCCeEeCCCcccCCCCCcCCCCCCCCCEEECCCCcCCccCc
Q 005038 547 NKLIGHIPPQIGNLTRIQTLNLSHNNLTGSIPSTFSNLKHVESLDLSNNKLNGKIP 602 (717)
Q Consensus 547 n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~N~i~~~~p 602 (717)
|++++..|..+..+++| +|++++|++++..|..+..+++|++|++++|++.+..+
T Consensus 510 N~l~~~~~~~l~~l~~L-~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~c~ 564 (606)
T 3t6q_A 510 NRLTSSSIEALSHLKGI-YLNLASNHISIILPSLLPILSQQRTINLRQNPLDCTCS 564 (606)
T ss_dssp SCCCGGGGGGGTTCCSC-EEECCSSCCCCCCGGGHHHHHTSSEEECTTCCEECSGG
T ss_pred CccCcCChhHhCccccc-EEECcCCcccccCHhhcccCCCCCEEeCCCCCccccCC
Confidence 99999999999999999 99999999999889889999999999999999987665
No 8
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=100.00 E-value=7.1e-54 Score=479.78 Aligned_cols=565 Identities=19% Similarity=0.207 Sum_probs=334.0
Q ss_pred CCCCcceeeCcccccCCCCCCeeeCCCCCCCCCcchhccCCCCCCEEeCCCCCCcccCCccccCCCCCCCEEECCCCccc
Q 005038 2 SSCEVNGVVRSQGLCSLVHLQELYIASNDLRGSLPWCMANMTSLRILDVSSNQLTGSISSSPLVHLTSIEELMLSNNYFQ 81 (717)
Q Consensus 2 ~~~~~~g~i~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~i~~~~~~~l~~L~~L~L~~n~~~ 81 (717)
++++++ .+|. .+. +++++|++++|.+++..+..|+++++|++|++++|.++ .+++.+|.++++|++|++++|.++
T Consensus 19 ~~~~l~-~ip~-~~~--~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~-~i~~~~~~~l~~L~~L~Ls~n~l~ 93 (606)
T 3vq2_A 19 MDQKLS-KVPD-DIP--SSTKNIDLSFNPLKILKSYSFSNFSELQWLDLSRCEIE-TIEDKAWHGLHHLSNLILTGNPIQ 93 (606)
T ss_dssp TTSCCS-SCCT-TSC--TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCC-EECTTTTTTCTTCCEEECTTCCCC
T ss_pred cCCCcc-cCCC-CCC--CCcCEEECCCCCcCEeChhhccCCccCcEEeCCCCccc-ccCHHHhhchhhcCEeECCCCccc
Confidence 344555 5664 232 67788888888877766677778888888888888777 444446777888888888877776
Q ss_pred CcCCcccccCCCCCCEEEccCCcccccccccccccCCCccccEEEccCCCCCCCCCchhhcCCCCCCEEEccCCCCcccC
Q 005038 82 IPISLEPLFNYSRLKIFNAENNEIKAEITESHSLIAPKFQLNTLSLSSNYGDGFIFPKFLYHQHDLEYVDLSHIKMNGEF 161 (717)
Q Consensus 82 ~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~ 161 (717)
+ .....|.++++|++|++++|.+....+.. +..+.+|++|++++|......+|..++++++|++|++++|.+++..
T Consensus 94 ~-~~p~~~~~l~~L~~L~L~~n~l~~~~~~~---~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~Ls~n~l~~~~ 169 (606)
T 3vq2_A 94 S-FSPGSFSGLTSLENLVAVETKLASLESFP---IGQLITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNYIQTIT 169 (606)
T ss_dssp C-CCTTSSTTCTTCCEEECTTSCCCCSSSSC---CTTCTTCCEEECCSSCCCCCCCCGGGGTCTTCCEEECCSSCCCEEC
T ss_pred c-cChhhcCCcccCCEEEccCCccccccccc---cCCCCCCCEEeCCCCcccceechHhHhhcCCCCEEEccCCcceecC
Confidence 4 33356777778888888777776443222 3444566666663333222245556666666666666666555433
Q ss_pred ChhhhhCCCC----CCEEEccCCcCcccCccCcCCCCCcCEEEccCCcCCccCCccccccCCCCcEEECCCCCCCccCCc
Q 005038 162 PNWLLENNTK----LETLFLVNDSLAGPFRLPIHSHKRLRQLDVSNNNIRGHIPVKIGDVLPSLYVFNNSMNALDGSIPS 237 (717)
Q Consensus 162 ~~~~~~~~~~----L~~L~l~~n~~~~~~~~~~~~~~~L~~L~ls~n~i~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~ 237 (717)
+..+ ..+++ ++++++++|.+.+..+..+... +|++|++++|.+++. ..|.
T Consensus 170 ~~~~-~~l~~L~~~l~~L~l~~n~l~~~~~~~~~~~-~L~~L~L~~n~~~~~------------------------~~~~ 223 (606)
T 3vq2_A 170 VNDL-QFLRENPQVNLSLDMSLNPIDFIQDQAFQGI-KLHELTLRGNFNSSN------------------------IMKT 223 (606)
T ss_dssp TTTT-HHHHHCTTCCCEEECTTCCCCEECTTTTTTC-EEEEEEEESCCSCHH------------------------HHHH
T ss_pred hhhh-hhhhccccccceeeccCCCcceeCcccccCc-eeeeeeccCCccchh------------------------HHHH
Confidence 3322 22222 2355555555554433333333 555555555555432 2333
Q ss_pred cccCCCCCCEEEccCCcccc-----ccchhhhhCCC--CCCEEEc-cCcccCccCcccccCCCCCCeEECcCCcCcccCc
Q 005038 238 SFGNMKFLQILDLSNNHLTG-----EIPEHLAVGCV--NLQFLAL-SNNNLQGHLFSRNFNLTNLQWLQLEGNRFVGEIP 309 (717)
Q Consensus 238 ~l~~l~~L~~L~Ls~n~l~~-----~~~~~~~~~~~--~L~~L~L-~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~ 309 (717)
.+.+++.|+.+++..+.+.+ .++...+.++. .++.+++ ..+.+.+..+. +..+++|++|++++|.+. .+|
T Consensus 224 ~~~~l~~L~~l~l~~~~~~~~~~l~~~~~~~~~~l~~l~l~~l~l~~~~~~~~~~~~-~~~l~~L~~L~l~~~~~~-~l~ 301 (606)
T 3vq2_A 224 CLQNLAGLHVHRLILGEFKDERNLEIFEPSIMEGLCDVTIDEFRLTYTNDFSDDIVK-FHCLANVSAMSLAGVSIK-YLE 301 (606)
T ss_dssp HHHTTTTCEEEEEEEECCTTSCCCSCCCGGGGTTGGGSEEEEEEECCCTTCCGGGGS-CGGGTTCSEEEEESCCCC-CCC
T ss_pred HhccccccccccccccccccCCcccccChHHhhhhhhccHhheeccccccccccccc-cccCCCCCEEEecCccch-hhh
Confidence 34444444444433222110 11111111111 2444444 34444444444 555566666666666554 233
Q ss_pred ccccCCCCCCEEEccCCcCcCcCCcccCCCCCCCEEEccCCcccCCcccccCCCCCCCEEEccCCcCcccC--CCc-ccc
Q 005038 310 QSLSKCSSLEGLYLNNNSLLGKIPRWLGNLTRLQYIIMPNNHLEGPIPVEFCQLDSLQILDISDNNISGSL--PSC-FHP 386 (717)
Q Consensus 310 ~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~--~~~-~~~ 386 (717)
.+..+++|++|++++|.+ +.+| .+ .+++|+.|++++|...+. ..+..+++|++|++++|.+.+.. +.. ..+
T Consensus 302 -~l~~~~~L~~L~l~~n~l-~~lp-~~-~l~~L~~L~l~~n~~~~~--~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~ 375 (606)
T 3vq2_A 302 -DVPKHFKWQSLSIIRCQL-KQFP-TL-DLPFLKSLTLTMNKGSIS--FKKVALPSLSYLDLSRNALSFSGCCSYSDLGT 375 (606)
T ss_dssp -CCCTTCCCSEEEEESCCC-SSCC-CC-CCSSCCEEEEESCSSCEE--CCCCCCTTCCEEECCSSCEEEEEECCHHHHCC
T ss_pred -hccccccCCEEEcccccC-cccc-cC-CCCccceeeccCCcCccc--hhhccCCCCCEEECcCCccCCCcchhhhhccC
Confidence 455556666666666665 3444 23 556666666666633321 24445566666666666555431 222 224
Q ss_pred ccccEEeccCcccccccCccccCCCCcCCEEeCCCCcCCcccc-hhhhCCCCCcEEEcCCCccccccchhccCCCCCCEE
Q 005038 387 LSIKQVHLSKNMLHGQLKRGTFFNCSSLVTLDLSYNRLNGSIP-DWVDGLSQLSHLILGHNNLEGEVSVQLCELNQLQLL 465 (717)
Q Consensus 387 ~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~L~~n~~~~~~~-~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L 465 (717)
++|+.|++++|.+.+ ++ ..+..+++|++|++++|.+.+..+ ..+..+++|++|++++|++++..+..+..+++|++|
T Consensus 376 ~~L~~L~L~~n~l~~-~~-~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L 453 (606)
T 3vq2_A 376 NSLRHLDLSFNGAII-MS-ANFMGLEELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYTNTKIDFDGIFLGLTSLNTL 453 (606)
T ss_dssp SCCCEEECCSCSEEE-EC-CCCTTCTTCCEEECTTSEEESTTTTTTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEE
T ss_pred CcccEeECCCCcccc-ch-hhccCCCCCCeeECCCCccCCccChhhhhccccCCEEECcCCCCCccchhhhcCCCCCCEE
Confidence 455555555555433 33 337778888888888888887766 577888888888888888888888888888888888
Q ss_pred EccCCcCcc-CCCcccccccccccccCCCCCCcchhhhhhcccccccccccccceEEEeeccceeeeccccccccceeeC
Q 005038 466 DLSNNNLHG-PIPPCFDNTTLHESYSNSSSPDEQFEIFFSIEGHQGFLEKQNHEIFEFTTKNIAYIYQGKVLSLLSGLDL 544 (717)
Q Consensus 466 ~L~~n~l~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L 544 (717)
++++|++++ .+|..+..+ ++|+.|++
T Consensus 454 ~l~~n~l~~~~~~~~~~~l-----------------------------------------------------~~L~~L~L 480 (606)
T 3vq2_A 454 KMAGNSFKDNTLSNVFANT-----------------------------------------------------TNLTFLDL 480 (606)
T ss_dssp ECTTCEEGGGEECSCCTTC-----------------------------------------------------TTCCEEEC
T ss_pred ECCCCcCCCcchHHhhccC-----------------------------------------------------CCCCEEEC
Confidence 888888876 355555443 37888899
Q ss_pred CCCccCCCCcccccCCccCCeEeCCCcccCCCCCcCCCCCCCCCEEECCCCcCCccCchhhcCCC-CCCEEeccCCcCee
Q 005038 545 SCNKLIGHIPPQIGNLTRIQTLNLSHNNLTGSIPSTFSNLKHVESLDLSNNKLNGKIPHQLVELK-TLEVFSVAYNNLSG 623 (717)
Q Consensus 545 ~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~N~i~~~~p~~~~~l~-~L~~L~l~~N~l~~ 623 (717)
++|++++..|..+.++++|++|+|++|++++..|..|.++++|++|++++|+++ .+|..+..++ +|++|++++|++.|
T Consensus 481 s~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~l~-~~p~~~~~l~~~L~~l~l~~N~~~c 559 (606)
T 3vq2_A 481 SKCQLEQISWGVFDTLHRLQLLNMSHNNLLFLDSSHYNQLYSLSTLDCSFNRIE-TSKGILQHFPKSLAFFNLTNNSVAC 559 (606)
T ss_dssp TTSCCCEECTTTTTTCTTCCEEECCSSCCSCEEGGGTTTCTTCCEEECTTSCCC-CEESCGGGSCTTCCEEECCSCCCCC
T ss_pred CCCcCCccChhhhcccccCCEEECCCCcCCCcCHHHccCCCcCCEEECCCCcCc-ccCHhHhhhcccCcEEEccCCCccc
Confidence 998888888888888999999999999998888888888999999999999988 6677788886 59999999999988
Q ss_pred cCCC-CCcccCCCCcccccCCcCCC-CCCCCCCCCCCCCCCCCCCCCCCCc
Q 005038 624 EIPE-WKAQFATFNESSYEGNTFLC-GLPLPICRSPATMPEASIGNEQDDN 672 (717)
Q Consensus 624 ~~p~-~~~~~~~l~~~~~~~n~~~c-~~~l~~C~~~~~~~~~~~~~~~~~~ 672 (717)
.++. |+.+| +. .++... +.....|..|....+.++.+++...
T Consensus 560 ~c~~~~~~~~--l~-----~~~~~~~~~~~~~C~~p~~~~~~~l~~~~~~~ 603 (606)
T 3vq2_A 560 ICEHQKFLQW--VK-----EQKQFLVNVEQMTCATPVEMNTSLVLDFNNST 603 (606)
T ss_dssp SSTTHHHHTT--TT-----TSSSSBSSGGGCCCC-----------------
T ss_pred CCccHHHHHH--HH-----cCcccccCCccceeCCChHhCCCEeeeccccc
Confidence 7663 22222 11 111111 1111248888888887776665543
No 9
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=100.00 E-value=1e-52 Score=485.43 Aligned_cols=530 Identities=21% Similarity=0.223 Sum_probs=408.3
Q ss_pred CeeeCCCCCCCCCcchhccCCCCCCEEeCCCCCCcccCCccccCCCCCCCEEECCCCcccCcCCcccccCCCCCCEEEcc
Q 005038 22 QELYIASNDLRGSLPWCMANMTSLRILDVSSNQLTGSISSSPLVHLTSIEELMLSNNYFQIPISLEPLFNYSRLKIFNAE 101 (717)
Q Consensus 22 ~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~i~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~l~ 101 (717)
+..|.++++++ .+|. -.++|++|||++|.++ .++...|.++++|++|++++|...+.++...|.++++|++|+++
T Consensus 7 ~~~dcs~~~L~-~vP~---lp~~l~~LdLs~N~i~-~i~~~~~~~l~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls 81 (844)
T 3j0a_A 7 RIAFYRFCNLT-QVPQ---VLNTTERLLLSFNYIR-TVTASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLG 81 (844)
T ss_dssp EEEEESCCCSS-CCCS---SCTTCCEEEEESCCCC-EECSSSCSSCCSCSEEEECTTCCCCEECTTTTSSCTTCCEEECT
T ss_pred eEEEccCCCCC-CCCC---CCCCcCEEECCCCcCC-ccChhHCcccccCeEEeCCCCCCccccCHHHhcCCCCCCEEECC
Confidence 35777888888 4454 4589999999999998 55444899999999999999977667766789999999999999
Q ss_pred CCcccccccccccccCCCccccEEEccCCCCCCCCCchhhcCCCCCCEEEccCCCCcccCChh-hhhCCCCCCEEEccCC
Q 005038 102 NNEIKAEITESHSLIAPKFQLNTLSLSSNYGDGFIFPKFLYHQHDLEYVDLSHIKMNGEFPNW-LLENNTKLETLFLVND 180 (717)
Q Consensus 102 ~n~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~-~~~~~~~L~~L~l~~n 180 (717)
+|.+....+ ..+..+++|++|++++|.+++.+|.. .+.++++|++|++++|
T Consensus 82 ~N~l~~~~p----------------------------~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N 133 (844)
T 3j0a_A 82 SSKIYFLHP----------------------------DAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKN 133 (844)
T ss_dssp TCCCCEECT----------------------------TSSCSCSSCCCEECTTCCCSSCCSTTCCCSSCSSCCEEEEESC
T ss_pred CCcCcccCH----------------------------hHccCCcccCEeeCcCCCCCcccccCccccccCCCCEEECCCC
Confidence 998865433 34445555556666665555433332 2345566666666666
Q ss_pred cCcccCc-cCcCCCCCcCEEEccCCcCCccCCccccccC--CCCcEEECCCCCCCccCCccccCCCC------CCEEEcc
Q 005038 181 SLAGPFR-LPIHSHKRLRQLDVSNNNIRGHIPVKIGDVL--PSLYVFNNSMNALDGSIPSSFGNMKF------LQILDLS 251 (717)
Q Consensus 181 ~~~~~~~-~~~~~~~~L~~L~ls~n~i~~~~~~~~~~~l--~~L~~L~l~~n~~~~~~~~~l~~l~~------L~~L~Ls 251 (717)
.+.+..+ ..++++++|++|++++|.+++..+..+.. + ++|+.|+++.|.+.+..|..+..+++ |++|+++
T Consensus 134 ~l~~~~~~~~~~~L~~L~~L~Ls~N~i~~~~~~~l~~-l~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~L~~L~Ls 212 (844)
T 3j0a_A 134 QIRSLYLHPSFGKLNSLKSIDFSSNQIFLVCEHELEP-LQGKTLSFFSLAANSLYSRVSVDWGKCMNPFRNMVLEILDVS 212 (844)
T ss_dssp CCCCCCCCGGGGTCSSCCEEEEESSCCCCCCSGGGHH-HHHCSSCCCEECCSBSCCCCCCCCCSSSCTTTTCCBSEEBCS
T ss_pred cccccccchhHhhCCCCCEEECCCCcCCeeCHHHccc-ccCCccceEECCCCccccccccchhhcCCccccCceeEEecC
Confidence 6655433 34566666666666666665444444332 2 56666666666666655555555444 7888888
Q ss_pred CCccccccchhhhhCC--CCCCEEEccCc---------ccCccCcccccCC--CCCCeEECcCCcCcccCcccccCCCCC
Q 005038 252 NNHLTGEIPEHLAVGC--VNLQFLALSNN---------NLQGHLFSRNFNL--TNLQWLQLEGNRFVGEIPQSLSKCSSL 318 (717)
Q Consensus 252 ~n~l~~~~~~~~~~~~--~~L~~L~L~~n---------~i~~~~~~~~~~l--~~L~~L~L~~n~l~~~~~~~~~~l~~L 318 (717)
+|.+++.++..+.... ..++.+.++.+ .+.......|.++ ++|++|++++|.+.+..+..+..+++|
T Consensus 213 ~n~l~~~~~~~~~~~l~~~~l~~L~l~~~~~~~~~~~~~l~~~~~~~f~~l~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L 292 (844)
T 3j0a_A 213 GNGWTVDITGNFSNAISKSQAFSLILAHHIMGAGFGFHNIKDPDQNTFAGLARSSVRHLDLSHGFVFSLNSRVFETLKDL 292 (844)
T ss_dssp SCCSSTTTTSGGGGTSCSCCBSEEECCSSCCBCSSSCSSSTTGGGTTTTTTTTSCCCEEECTTCCCCEECSCCSSSCCCC
T ss_pred CCcCchhHHHHHHhhcCcccccceecccccccccccccccCCCChhhhhccccCCccEEECCCCcccccChhhhhcCCCC
Confidence 8877766666555322 45777776633 3333344455544 789999999999998888999999999
Q ss_pred CEEEccCCcCcCcCCcccCCCCCCCEEEccCCcccCCcccccCCCCCCCEEEccCCcCcccCCCccc-cccccEEeccCc
Q 005038 319 EGLYLNNNSLLGKIPRWLGNLTRLQYIIMPNNHLEGPIPVEFCQLDSLQILDISDNNISGSLPSCFH-PLSIKQVHLSKN 397 (717)
Q Consensus 319 ~~L~L~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~-~~~L~~L~l~~n 397 (717)
+.|++++|.+.+..+..|..+++|+.|++++|.+.+..+..|..+++|+.|++++|.+....+..+. .++|+.|++++|
T Consensus 293 ~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N 372 (844)
T 3j0a_A 293 KVLNLAYNKINKIADEAFYGLDNLQVLNLSYNLLGELYSSNFYGLPKVAYIDLQKNHIAIIQDQTFKFLEKLQTLDLRDN 372 (844)
T ss_dssp CEEEEESCCCCEECTTTTTTCSSCCEEEEESCCCSCCCSCSCSSCTTCCEEECCSCCCCCCCSSCSCSCCCCCEEEEETC
T ss_pred CEEECCCCcCCCCChHHhcCCCCCCEEECCCCCCCccCHHHhcCCCCCCEEECCCCCCCccChhhhcCCCCCCEEECCCC
Confidence 9999999999988888999999999999999999988899999999999999999999877776665 789999999999
Q ss_pred ccccccCccccCCCCcCCEEeCCCCcCCcccchhhhCCCCCcEEEcCCCccccccc-hhccCCCCCCEEEccCCcCccCC
Q 005038 398 MLHGQLKRGTFFNCSSLVTLDLSYNRLNGSIPDWVDGLSQLSHLILGHNNLEGEVS-VQLCELNQLQLLDLSNNNLHGPI 476 (717)
Q Consensus 398 ~~~~~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~-~~l~~l~~L~~L~L~~n~l~~~~ 476 (717)
.+.+ +..+++|+.|++++|++.. +|.. ..+++.|++++|++++... ..+..+++|+.|++++|++++..
T Consensus 373 ~l~~------i~~~~~L~~L~l~~N~l~~-l~~~---~~~l~~L~ls~N~l~~l~~~~~~~~l~~L~~L~Ls~N~l~~~~ 442 (844)
T 3j0a_A 373 ALTT------IHFIPSIPDIFLSGNKLVT-LPKI---NLTANLIHLSENRLENLDILYFLLRVPHLQILILNQNRFSSCS 442 (844)
T ss_dssp CSCC------CSSCCSCSEEEEESCCCCC-CCCC---CTTCCEEECCSCCCCSSTTHHHHTTCTTCCEEEEESCCCCCCC
T ss_pred CCCc------ccCCCCcchhccCCCCccc-cccc---ccccceeecccCccccCchhhhhhcCCccceeeCCCCcccccc
Confidence 9853 3347899999999999984 4432 5689999999999986543 34568999999999999998654
Q ss_pred CcccccccccccccCCCCCCcchhhhhhcccccccccccccceEEEeeccceeeeccccccccceeeCCCCccC-----C
Q 005038 477 PPCFDNTTLHESYSNSSSPDEQFEIFFSIEGHQGFLEKQNHEIFEFTTKNIAYIYQGKVLSLLSGLDLSCNKLI-----G 551 (717)
Q Consensus 477 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~-----~ 551 (717)
+.... ..+++|+.|++++|.+. +
T Consensus 443 ~~~~~----------------------------------------------------~~~~~L~~L~Ls~N~l~~~~~~~ 470 (844)
T 3j0a_A 443 GDQTP----------------------------------------------------SENPSLEQLFLGENMLQLAWETE 470 (844)
T ss_dssp SSSSS----------------------------------------------------CSCTTCCBCEEESCCCSSSCCSC
T ss_pred ccccc----------------------------------------------------ccCCccccccCCCCccccccccc
Confidence 32110 11347999999999997 4
Q ss_pred CCcccccCCccCCeEeCCCcccCCCCCcCCCCCCCCCEEECCCCcCCccCchhhcCCCCCCEEeccCCcCeecCCCCCcc
Q 005038 552 HIPPQIGNLTRIQTLNLSHNNLTGSIPSTFSNLKHVESLDLSNNKLNGKIPHQLVELKTLEVFSVAYNNLSGEIPEWKAQ 631 (717)
Q Consensus 552 ~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~N~i~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~ 631 (717)
..+..|.++++|++|+|++|++++..|..|.++++|++|+|++|++++..|..+. ++|+.|++++|++++..|..+
T Consensus 471 ~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~--~~L~~L~Ls~N~l~~~~~~~~-- 546 (844)
T 3j0a_A 471 LCWDVFEGLSHLQVLYLNHNYLNSLPPGVFSHLTALRGLSLNSNRLTVLSHNDLP--ANLEILDISRNQLLAPNPDVF-- 546 (844)
T ss_dssp CCSSCSSCBCCEECCCCCHHHHTTCCTTSSSSCCSCSEEEEESCCCSSCCCCCCC--SCCCEEEEEEECCCCCCSCCC--
T ss_pred cchhhhcCcccccEEECCCCcccccChhHccchhhhheeECCCCCCCccChhhhh--ccccEEECCCCcCCCCChhHh--
Confidence 4556789999999999999999999999999999999999999999977776665 899999999999999998754
Q ss_pred cCCCCcccccCCcCCCCCCCC
Q 005038 632 FATFNESSYEGNTFLCGLPLP 652 (717)
Q Consensus 632 ~~~l~~~~~~~n~~~c~~~l~ 652 (717)
..+..+.+.+||+.|+|+..
T Consensus 547 -~~L~~l~l~~Np~~C~c~~~ 566 (844)
T 3j0a_A 547 -VSLSVLDITHNKFICECELS 566 (844)
T ss_dssp -SSCCEEEEEEECCCCSSSCC
T ss_pred -CCcCEEEecCCCcccccccH
Confidence 57788899999999999864
No 10
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=100.00 E-value=2.3e-52 Score=467.49 Aligned_cols=535 Identities=19% Similarity=0.169 Sum_probs=431.8
Q ss_pred CCCeeeCCCCCCCCCcchhccCCCCCCEEeCCCCCCcccCCccccCCCCCCCEEECCCCcccCcCCcccccCCCCCCEEE
Q 005038 20 HLQELYIASNDLRGSLPWCMANMTSLRILDVSSNQLTGSISSSPLVHLTSIEELMLSNNYFQIPISLEPLFNYSRLKIFN 99 (717)
Q Consensus 20 ~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~i~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~ 99 (717)
.-++++.++++++ .+|..+. ++|++|+|++|.++ .++...|.++++|++|++++|.+++ ++...|.++++|++|+
T Consensus 12 ~~~~~~c~~~~l~-~ip~~~~--~~l~~L~Ls~n~l~-~~~~~~~~~l~~L~~L~Ls~n~l~~-i~~~~~~~l~~L~~L~ 86 (606)
T 3vq2_A 12 PNITYQCMDQKLS-KVPDDIP--SSTKNIDLSFNPLK-ILKSYSFSNFSELQWLDLSRCEIET-IEDKAWHGLHHLSNLI 86 (606)
T ss_dssp TTTEEECTTSCCS-SCCTTSC--TTCCEEECTTSCCC-EECTTTTTTCTTCCEEECTTCCCCE-ECTTTTTTCTTCCEEE
T ss_pred CCCceEccCCCcc-cCCCCCC--CCcCEEECCCCCcC-EeChhhccCCccCcEEeCCCCcccc-cCHHHhhchhhcCEeE
Confidence 3468999999998 5666554 89999999999998 5555589999999999999998874 4445788889999999
Q ss_pred ccCCcccccccccccccCCCccccEEEccCCCCCCCCCchhhcCCCCCCEEEccCCCCcccCChhhhhCCCCCCEEEccC
Q 005038 100 AENNEIKAEITESHSLIAPKFQLNTLSLSSNYGDGFIFPKFLYHQHDLEYVDLSHIKMNGEFPNWLLENNTKLETLFLVN 179 (717)
Q Consensus 100 l~~n~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~ 179 (717)
+++|.+... .|..+..+++|++|++++|.+.+..+.. +.++++|++|++++
T Consensus 87 Ls~n~l~~~----------------------------~p~~~~~l~~L~~L~L~~n~l~~~~~~~-~~~l~~L~~L~L~~ 137 (606)
T 3vq2_A 87 LTGNPIQSF----------------------------SPGSFSGLTSLENLVAVETKLASLESFP-IGQLITLKKLNVAH 137 (606)
T ss_dssp CTTCCCCCC----------------------------CTTSSTTCTTCCEEECTTSCCCCSSSSC-CTTCTTCCEEECCS
T ss_pred CCCCccccc----------------------------ChhhcCCcccCCEEEccCCccccccccc-cCCCCCCCEEeCCC
Confidence 888876532 3456667778888888888877443343 47788888888888
Q ss_pred CcCcc-cCccCcCCCCCcCEEEccCCcCCccCCccccccCCC----CcEEECCCCCCCccCCccccCCCCCCEEEccCCc
Q 005038 180 DSLAG-PFRLPIHSHKRLRQLDVSNNNIRGHIPVKIGDVLPS----LYVFNNSMNALDGSIPSSFGNMKFLQILDLSNNH 254 (717)
Q Consensus 180 n~~~~-~~~~~~~~~~~L~~L~ls~n~i~~~~~~~~~~~l~~----L~~L~l~~n~~~~~~~~~l~~l~~L~~L~Ls~n~ 254 (717)
|.+.+ .+|..++++++|++|++++|.+++..+..+.. +++ +.++++++|.+.+..+..+... +|++|++++|.
T Consensus 138 n~l~~~~lp~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~-l~~L~~~l~~L~l~~n~l~~~~~~~~~~~-~L~~L~L~~n~ 215 (606)
T 3vq2_A 138 NFIHSCKLPAYFSNLTNLVHVDLSYNYIQTITVNDLQF-LRENPQVNLSLDMSLNPIDFIQDQAFQGI-KLHELTLRGNF 215 (606)
T ss_dssp SCCCCCCCCGGGGTCTTCCEEECCSSCCCEECTTTTHH-HHHCTTCCCEEECTTCCCCEECTTTTTTC-EEEEEEEESCC
T ss_pred CcccceechHhHhhcCCCCEEEccCCcceecChhhhhh-hhccccccceeeccCCCcceeCcccccCc-eeeeeeccCCc
Confidence 88876 45777888888889999888888554443332 333 4589999999886666655554 89999999999
Q ss_pred cccccchhhhhCCCCCCEEEccCcccCc------cCcccccCCC--CCCeEEC-cCCcCcccCcccccCCCCCCEEEccC
Q 005038 255 LTGEIPEHLAVGCVNLQFLALSNNNLQG------HLFSRNFNLT--NLQWLQL-EGNRFVGEIPQSLSKCSSLEGLYLNN 325 (717)
Q Consensus 255 l~~~~~~~~~~~~~~L~~L~L~~n~i~~------~~~~~~~~l~--~L~~L~L-~~n~l~~~~~~~~~~l~~L~~L~L~~ 325 (717)
+.+......+..++.++.+++..+.+.. .....+.++. .++.+++ ..+.+.+..|. +..+++|+.|++++
T Consensus 216 ~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~l~~~~~~~~~~l~~l~l~~l~l~~~~~~~~~~~~-~~~l~~L~~L~l~~ 294 (606)
T 3vq2_A 216 NSSNIMKTCLQNLAGLHVHRLILGEFKDERNLEIFEPSIMEGLCDVTIDEFRLTYTNDFSDDIVK-FHCLANVSAMSLAG 294 (606)
T ss_dssp SCHHHHHHHHHTTTTCEEEEEEEECCTTSCCCSCCCGGGGTTGGGSEEEEEEECCCTTCCGGGGS-CGGGTTCSEEEEES
T ss_pred cchhHHHHHhccccccccccccccccccCCcccccChHHhhhhhhccHhheeccccccccccccc-cccCCCCCEEEecC
Confidence 8755555556679999999887654432 1111222221 4666777 66777777776 89999999999999
Q ss_pred CcCcCcCCcccCCCCCCCEEEccCCcccCCcccccCCCCCCCEEEccCCcCcccCCCccccccccEEeccCccccccc-C
Q 005038 326 NSLLGKIPRWLGNLTRLQYIIMPNNHLEGPIPVEFCQLDSLQILDISDNNISGSLPSCFHPLSIKQVHLSKNMLHGQL-K 404 (717)
Q Consensus 326 n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~L~~L~l~~n~~~~~~-~ 404 (717)
|.+. .+| .+..+++|+.|++++|.+. .+| .+ .+++|++|++++|+..+.. .....++|+.|++++|.+.+.. .
T Consensus 295 ~~~~-~l~-~l~~~~~L~~L~l~~n~l~-~lp-~~-~l~~L~~L~l~~n~~~~~~-~~~~l~~L~~L~ls~n~l~~~~~~ 368 (606)
T 3vq2_A 295 VSIK-YLE-DVPKHFKWQSLSIIRCQLK-QFP-TL-DLPFLKSLTLTMNKGSISF-KKVALPSLSYLDLSRNALSFSGCC 368 (606)
T ss_dssp CCCC-CCC-CCCTTCCCSEEEEESCCCS-SCC-CC-CCSSCCEEEEESCSSCEEC-CCCCCTTCCEEECCSSCEEEEEEC
T ss_pred ccch-hhh-hccccccCCEEEcccccCc-ccc-cC-CCCccceeeccCCcCccch-hhccCCCCCEEECcCCccCCCcch
Confidence 9996 456 7889999999999999994 666 45 8999999999999665544 3446889999999999986542 1
Q ss_pred ccccCCCCcCCEEeCCCCcCCcccchhhhCCCCCcEEEcCCCccccccc-hhccCCCCCCEEEccCCcCccCCCcccccc
Q 005038 405 RGTFFNCSSLVTLDLSYNRLNGSIPDWVDGLSQLSHLILGHNNLEGEVS-VQLCELNQLQLLDLSNNNLHGPIPPCFDNT 483 (717)
Q Consensus 405 ~~~~~~~~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~-~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~ 483 (717)
...+..+++|++|++++|.+.+ +|..+..+++|+.|++++|++.+..+ ..+..+++|+.|++++|.+.+..|..+..+
T Consensus 369 ~~~~~~~~~L~~L~L~~n~l~~-~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l 447 (606)
T 3vq2_A 369 SYSDLGTNSLRHLDLSFNGAII-MSANFMGLEELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYTNTKIDFDGIFLGL 447 (606)
T ss_dssp CHHHHCCSCCCEEECCSCSEEE-ECCCCTTCTTCCEEECTTSEEESTTTTTTTTTCTTCCEEECTTSCCEECCTTTTTTC
T ss_pred hhhhccCCcccEeECCCCcccc-chhhccCCCCCCeeECCCCccCCccChhhhhccccCCEEECcCCCCCccchhhhcCC
Confidence 3347889999999999999885 56788999999999999999998877 688999999999999999998888776554
Q ss_pred cccccccCCCCCCcchhhhhhcccccccccccccceEEEeeccceeeeccccccccceeeCCCCccCC-CCcccccCCcc
Q 005038 484 TLHESYSNSSSPDEQFEIFFSIEGHQGFLEKQNHEIFEFTTKNIAYIYQGKVLSLLSGLDLSCNKLIG-HIPPQIGNLTR 562 (717)
Q Consensus 484 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~-~~~~~l~~l~~ 562 (717)
+ +|+.|++++|++.+ ..|..++.+++
T Consensus 448 ~-----------------------------------------------------~L~~L~l~~n~l~~~~~~~~~~~l~~ 474 (606)
T 3vq2_A 448 T-----------------------------------------------------SLNTLKMAGNSFKDNTLSNVFANTTN 474 (606)
T ss_dssp T-----------------------------------------------------TCCEEECTTCEEGGGEECSCCTTCTT
T ss_pred C-----------------------------------------------------CCCEEECCCCcCCCcchHHhhccCCC
Confidence 3 79999999999997 47888999999
Q ss_pred CCeEeCCCcccCCCCCcCCCCCCCCCEEECCCCcCCccCchhhcCCCCCCEEeccCCcCeecCCCCCcccC-CCCccccc
Q 005038 563 IQTLNLSHNNLTGSIPSTFSNLKHVESLDLSNNKLNGKIPHQLVELKTLEVFSVAYNNLSGEIPEWKAQFA-TFNESSYE 641 (717)
Q Consensus 563 L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~N~i~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~~~-~l~~~~~~ 641 (717)
|++|++++|++++..|..|.++++|++|++++|++++..|..+..+++|++|++++|+++ .+|..+..+. +++.+.+.
T Consensus 475 L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~l~-~~p~~~~~l~~~L~~l~l~ 553 (606)
T 3vq2_A 475 LTFLDLSKCQLEQISWGVFDTLHRLQLLNMSHNNLLFLDSSHYNQLYSLSTLDCSFNRIE-TSKGILQHFPKSLAFFNLT 553 (606)
T ss_dssp CCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCEEGGGTTTCTTCCEEECTTSCCC-CEESCGGGSCTTCCEEECC
T ss_pred CCEEECCCCcCCccChhhhcccccCCEEECCCCcCCCcCHHHccCCCcCCEEECCCCcCc-ccCHhHhhhcccCcEEEcc
Confidence 999999999999999999999999999999999999988999999999999999999999 6777677776 59999999
Q ss_pred CCcCCCCCCCC
Q 005038 642 GNTFLCGLPLP 652 (717)
Q Consensus 642 ~n~~~c~~~l~ 652 (717)
+||+.|+|+..
T Consensus 554 ~N~~~c~c~~~ 564 (606)
T 3vq2_A 554 NNSVACICEHQ 564 (606)
T ss_dssp SCCCCCSSTTH
T ss_pred CCCcccCCccH
Confidence 99999998763
No 11
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=100.00 E-value=2e-47 Score=424.83 Aligned_cols=492 Identities=21% Similarity=0.269 Sum_probs=287.2
Q ss_pred CCCCeeeCCCCCCCCCcchhccCCCCCCEEeCCCCCCcccCCccccCCCCCCCEEECCCCcccCcCCcccccCCCCCCEE
Q 005038 19 VHLQELYIASNDLRGSLPWCMANMTSLRILDVSSNQLTGSISSSPLVHLTSIEELMLSNNYFQIPISLEPLFNYSRLKIF 98 (717)
Q Consensus 19 ~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~i~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L 98 (717)
+++++|++++|.+++..+.+|.++++|++||+++|.++ .++..+|.++++|++|++++|.++. ++...|.++++|++|
T Consensus 28 ~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~-~i~~~~~~~l~~L~~L~L~~n~l~~-~~~~~~~~l~~L~~L 105 (570)
T 2z63_A 28 FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQ-TIEDGAYQSLSHLSTLILTGNPIQS-LALGAFSGLSSLQKL 105 (570)
T ss_dssp SSCCEEECCSCCCCEECTTTTTTCSSCCEEECTTCCCC-EECTTTTTTCTTCCEEECTTCCCCE-ECTTTTTTCTTCCEE
T ss_pred ccccEEEccCCccCccChhHhhCCCCceEEECCCCcCC-ccCcccccCchhCCEEeCcCCcCCc-cCHhhhcCccccccc
Confidence 35666677766666665666666667777777766666 4444466666666666666666653 333456666666666
Q ss_pred EccCCcccccccccccccCCCccccEEEccCCCCCCCCCchhhcCCCCCCEEEccCCCCcc-cCChhhhhCCCCCCEEEc
Q 005038 99 NAENNEIKAEITESHSLIAPKFQLNTLSLSSNYGDGFIFPKFLYHQHDLEYVDLSHIKMNG-EFPNWLLENNTKLETLFL 177 (717)
Q Consensus 99 ~l~~n~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~-~~~~~~~~~~~~L~~L~l 177 (717)
++++|.+... .+..++.+++|++|++++|.+.+ .+|..+ .++++|++|++
T Consensus 106 ~L~~n~l~~l----------------------------~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~-~~l~~L~~L~l 156 (570)
T 2z63_A 106 VAVETNLASL----------------------------ENFPIGHLKTLKELNVAHNLIQSFKLPEYF-SNLTNLEHLDL 156 (570)
T ss_dssp ECTTSCCCCS----------------------------TTCSCTTCTTCCEEECCSSCCCCCCCCGGG-GGCTTCCEEEC
T ss_pred cccccccccC----------------------------CCccccccccccEEecCCCccceecChhhh-cccCCCCEEeC
Confidence 6666554321 11124566677777777776664 345543 55666666666
Q ss_pred cCCcCcccCccCcCCCCCc----CEEEccCCcCCccCCccccccCCCCcEEECCCCCCCccCCccccCCCCCCEEEccCC
Q 005038 178 VNDSLAGPFRLPIHSHKRL----RQLDVSNNNIRGHIPVKIGDVLPSLYVFNNSMNALDGSIPSSFGNMKFLQILDLSNN 253 (717)
Q Consensus 178 ~~n~~~~~~~~~~~~~~~L----~~L~ls~n~i~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~Ls~n 253 (717)
++|.+.+..+..++.+++| ++|++++|.++ +..|..+... +|+.|++++|
T Consensus 157 ~~n~l~~~~~~~~~~l~~L~~~~~~L~l~~n~l~-------------------------~~~~~~~~~~-~L~~L~l~~n 210 (570)
T 2z63_A 157 SSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMN-------------------------FIQPGAFKEI-RLHKLTLRNN 210 (570)
T ss_dssp TTSCCCEECGGGGHHHHTCTTCCCEEECTTCCCC-------------------------EECTTTTTTC-EEEEEEEESC
T ss_pred cCCccceecHHHccchhccchhhhhcccCCCCce-------------------------ecCHHHhccC-cceeEecccc
Confidence 6666665555555555555 55666666555 3333333322 3444444444
Q ss_pred ccccccchhhhhCCCCCCEEEccCcccC------ccCcccccCCC--CCCeEECcCC-cCcccCcccccCCCCCCEEEcc
Q 005038 254 HLTGEIPEHLAVGCVNLQFLALSNNNLQ------GHLFSRNFNLT--NLQWLQLEGN-RFVGEIPQSLSKCSSLEGLYLN 324 (717)
Q Consensus 254 ~l~~~~~~~~~~~~~~L~~L~L~~n~i~------~~~~~~~~~l~--~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~L~ 324 (717)
............++++++...+....+. ......+..++ .++.++++++ .+.+..+..+..+++|++|+++
T Consensus 211 ~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~~l~~~~~~~~~~l~~l~l~~l~l~~~~~~~~~~~~~~~~l~~L~~L~l~ 290 (570)
T 2z63_A 211 FDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLV 290 (570)
T ss_dssp CSCTTHHHHHHHTTTTCEEEEEEEEECCCCSSCEECCTTTTGGGGGSEEEEEEEEETTEEESCSTTTTGGGTTCSEEEEE
T ss_pred cccccchhhhhcCccccceeeeccccccCchhhhhcchhhhccccccchhhhhhhcchhhhhhchhhhcCcCcccEEEec
Confidence 2221111122223444443333221111 01111111111 1344444444 4444445555555555666665
Q ss_pred CCcCcCcCCcccCCCCCCCEEEccCCcccCCcccccCCCCCCCEEEccCCcCcccCCCccccccccEEeccCcccccccC
Q 005038 325 NNSLLGKIPRWLGNLTRLQYIIMPNNHLEGPIPVEFCQLDSLQILDISDNNISGSLPSCFHPLSIKQVHLSKNMLHGQLK 404 (717)
Q Consensus 325 ~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~ 404 (717)
+|.+. .+|..+..+ +|+.|++++|.+.. +|. ..+++|+.|++++|.+.+..+. ..+++|+.|++++|.+.+...
T Consensus 291 ~~~l~-~l~~~~~~~-~L~~L~l~~n~~~~-l~~--~~l~~L~~L~l~~n~~~~~~~~-~~~~~L~~L~l~~n~l~~~~~ 364 (570)
T 2z63_A 291 SVTIE-RVKDFSYNF-GWQHLELVNCKFGQ-FPT--LKLKSLKRLTFTSNKGGNAFSE-VDLPSLEFLDLSRNGLSFKGC 364 (570)
T ss_dssp SCEEC-SCCBCCSCC-CCSEEEEESCBCSS-CCB--CBCSSCCEEEEESCBSCCBCCC-CBCTTCCEEECCSSCCBEEEE
T ss_pred Cccch-hhhhhhccC-CccEEeeccCcccc-cCc--ccccccCEEeCcCCcccccccc-ccCCCCCEEeCcCCccCcccc
Confidence 55554 345555555 55666665555552 222 2445556666665555443332 334455555555555433210
Q ss_pred -ccccCCCCcCCEEeCCCCcCCcccchhhhCCCCCcEEEcCCCccccccc-hhccCCCCCCEEEccCCcCccCCCccccc
Q 005038 405 -RGTFFNCSSLVTLDLSYNRLNGSIPDWVDGLSQLSHLILGHNNLEGEVS-VQLCELNQLQLLDLSNNNLHGPIPPCFDN 482 (717)
Q Consensus 405 -~~~~~~~~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~-~~l~~l~~L~~L~L~~n~l~~~~~~~~~~ 482 (717)
...+..+++|++|++++|.+.+..+. +..+++|++|++++|++.+..+ ..+..+++|++|++++|.+.+..|..+..
T Consensus 365 ~~~~~~~~~~L~~L~l~~n~l~~~~~~-~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~ 443 (570)
T 2z63_A 365 CSQSDFGTTSLKYLDLSFNGVITMSSN-FLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNG 443 (570)
T ss_dssp EEHHHHTCSCCCEEECCSCSEEEEEEE-EETCTTCCEEECTTSEEESCTTSCTTTTCTTCCEEECTTSCCEECCTTTTTT
T ss_pred ccccccccCccCEEECCCCcccccccc-ccccCCCCEEEccCCccccccchhhhhcCCCCCEEeCcCCcccccchhhhhc
Confidence 22356677777888877777754444 7777778888888777776554 45677777888888877777666655544
Q ss_pred ccccccccCCCCCCcchhhhhhcccccccccccccceEEEeeccceeeeccccccccceeeCCCCccC-CCCcccccCCc
Q 005038 483 TTLHESYSNSSSPDEQFEIFFSIEGHQGFLEKQNHEIFEFTTKNIAYIYQGKVLSLLSGLDLSCNKLI-GHIPPQIGNLT 561 (717)
Q Consensus 483 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~-~~~~~~l~~l~ 561 (717)
++ +|+.|++++|.+. +.+|..+..++
T Consensus 444 l~-----------------------------------------------------~L~~L~l~~n~l~~~~~p~~~~~l~ 470 (570)
T 2z63_A 444 LS-----------------------------------------------------SLEVLKMAGNSFQENFLPDIFTELR 470 (570)
T ss_dssp CT-----------------------------------------------------TCCEEECTTCEEGGGEECSCCTTCT
T ss_pred CC-----------------------------------------------------cCcEEECcCCcCccccchhhhhccc
Confidence 33 6777888888776 45677777788
Q ss_pred cCCeEeCCCcccCCCCCcCCCCCCCCCEEECCCCcCCccCchhhcCCCCCCEEeccCCcCeecCCC
Q 005038 562 RIQTLNLSHNNLTGSIPSTFSNLKHVESLDLSNNKLNGKIPHQLVELKTLEVFSVAYNNLSGEIPE 627 (717)
Q Consensus 562 ~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~N~i~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~ 627 (717)
+|++|++++|++++..|..|..+++|++|++++|++++..|..+..+++|+.|++++|+++|.+|.
T Consensus 471 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~~ 536 (570)
T 2z63_A 471 NLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMASNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPR 536 (570)
T ss_dssp TCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCTTT
T ss_pred CCCEEECCCCccccCChhhhhcccCCCEEeCCCCcCCCCCHHHhhcccCCcEEEecCCcccCCCcc
Confidence 888888888888877777788888888888888888777677777788888888888888877764
No 12
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=100.00 E-value=2.7e-46 Score=413.43 Aligned_cols=488 Identities=20% Similarity=0.186 Sum_probs=341.7
Q ss_pred CCCCcceeeCcccccCCCCCCeeeCCCCCCCCCcchhccCCCCCCEEeCCCCCCcccCCccccCCCCCCCEEECCCCccc
Q 005038 2 SSCEVNGVVRSQGLCSLVHLQELYIASNDLRGSLPWCMANMTSLRILDVSSNQLTGSISSSPLVHLTSIEELMLSNNYFQ 81 (717)
Q Consensus 2 ~~~~~~g~i~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~i~~~~~~~l~~L~~L~L~~n~~~ 81 (717)
++++++ +||. .+. ++|++|++++|++++..|.+|.++++|++|++++|+++ .++..+|.++++|++|++++|.++
T Consensus 13 ~~~~l~-~ip~-~~~--~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~-~~~~~~~~~l~~L~~L~Ls~n~l~ 87 (549)
T 2z81_A 13 RSRSFT-SIPS-GLT--AAMKSLDLSFNKITYIGHGDLRACANLQVLILKSSRIN-TIEGDAFYSLGSLEHLDLSDNHLS 87 (549)
T ss_dssp TTSCCS-SCCS-CCC--TTCCEEECCSSCCCEECSSTTSSCTTCCEEECTTSCCC-EECTTTTTTCTTCCEEECTTSCCC
T ss_pred CCCccc-cccc-cCC--CCccEEECcCCccCccChhhhhcCCcccEEECCCCCcC-ccChhhccccccCCEEECCCCccC
Confidence 455666 6775 332 68888888888888777788888888888888888887 444447888888888888888887
Q ss_pred CcCCcccccCCCCCCEEEccCCcccccccccccccCCCccccEEEccCCCCCCCCCchhhcCCCCCCEEEccCCCCcccC
Q 005038 82 IPISLEPLFNYSRLKIFNAENNEIKAEITESHSLIAPKFQLNTLSLSSNYGDGFIFPKFLYHQHDLEYVDLSHIKMNGEF 161 (717)
Q Consensus 82 ~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~ 161 (717)
+ .+...++++++|++|++++|.+... ..+..+..+++|++|++++|...+.+
T Consensus 88 ~-~~~~~~~~l~~L~~L~Ls~n~l~~~---------------------------~~~~~~~~l~~L~~L~L~~n~~~~~~ 139 (549)
T 2z81_A 88 S-LSSSWFGPLSSLKYLNLMGNPYQTL---------------------------GVTSLFPNLTNLQTLRIGNVETFSEI 139 (549)
T ss_dssp S-CCHHHHTTCTTCCEEECTTCCCSSS---------------------------CSSCSCTTCTTCCEEEEEESSSCCEE
T ss_pred c-cCHHHhccCCCCcEEECCCCccccc---------------------------chhhhhhccCCccEEECCCCcccccc
Confidence 4 4445577888888888888776531 12345566778888888888755566
Q ss_pred ChhhhhCCCCCCEEEccCCcCcccCccCcCCCCCcCEEEccCCcCCccCCccccccCCCCcEEECCCCCCCccC--C-cc
Q 005038 162 PNWLLENNTKLETLFLVNDSLAGPFRLPIHSHKRLRQLDVSNNNIRGHIPVKIGDVLPSLYVFNNSMNALDGSI--P-SS 238 (717)
Q Consensus 162 ~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~ls~n~i~~~~~~~~~~~l~~L~~L~l~~n~~~~~~--~-~~ 238 (717)
|...+..+++|++|++++|.+.+..+..+..+++|++|++++|.+. .++..+...+++|++|++++|.+.+.. | ..
T Consensus 140 ~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~-~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~ 218 (549)
T 2z81_A 140 RRIDFAGLTSLNELEIKALSLRNYQSQSLKSIRDIHHLTLHLSESA-FLLEIFADILSSVRYLELRDTNLARFQFSPLPV 218 (549)
T ss_dssp CTTTTTTCCEEEEEEEEETTCCEECTTTTTTCSEEEEEEEECSBST-THHHHHHHSTTTBSEEEEESCBCTTCCCCCCSS
T ss_pred CHhhhhcccccCeeeccCCcccccChhhhhccccCceEecccCccc-ccchhhHhhcccccEEEccCCccccccccccch
Confidence 6544577888888888888888888888888888888888888875 556555555778888888888777532 1 12
Q ss_pred ccCCCCCCEEEccCCccccccchhhh---hCCCCCCEEEccCcccCccCcccccCCCCCCeEECcCCcCcccCcccccCC
Q 005038 239 FGNMKFLQILDLSNNHLTGEIPEHLA---VGCVNLQFLALSNNNLQGHLFSRNFNLTNLQWLQLEGNRFVGEIPQSLSKC 315 (717)
Q Consensus 239 l~~l~~L~~L~Ls~n~l~~~~~~~~~---~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l 315 (717)
...+++|+.|++++|.+++..+..+. ..+++|+.+++++|.+.+.... + . .....+..+
T Consensus 219 ~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~~~~~L~~l~l~~~~~~~~~~~-----~---~----------~~~~~~~~l 280 (549)
T 2z81_A 219 DEVSSPMKKLAFRGSVLTDESFNELLKLLRYILELSEVEFDDCTLNGLGDF-----N---P----------SESDVVSEL 280 (549)
T ss_dssp CCCCCCCCEEEEESCEEEHHHHHHHHGGGGGCTTCCEEEEESCEEECCSCC-----C---C----------CTTTCCCCC
T ss_pred hhhhhcccceeccccccchhHHHHHHHHhhhhccccccccccccccccccc-----c---c----------cchhhhhhh
Confidence 34567788888888877754444332 2345666666666655432100 0 0 001123445
Q ss_pred CCCCEEEccCCcCcCc-----CCcccCCCCCCCEEEccCCcccCCccccc-CCCCCCCEEEccCCcCcccCCCccccccc
Q 005038 316 SSLEGLYLNNNSLLGK-----IPRWLGNLTRLQYIIMPNNHLEGPIPVEF-CQLDSLQILDISDNNISGSLPSCFHPLSI 389 (717)
Q Consensus 316 ~~L~~L~L~~n~~~~~-----~~~~~~~l~~L~~L~l~~n~~~~~~~~~~-~~l~~L~~L~l~~n~~~~~~~~~~~~~~L 389 (717)
++++.|++.++.+... .+..+...++|+.|++++|.+.. +|..+ ..+++|++|++++|++.+..+..
T Consensus 281 ~~L~~L~l~~~~i~~~~~~~~l~~~~~~~~~L~~L~l~~n~l~~-ip~~~~~~l~~L~~L~Ls~N~l~~~~~~~------ 353 (549)
T 2z81_A 281 GKVETVTIRRLHIPQFYLFYDLSTVYSLLEKVKRITVENSKVFL-VPCSFSQHLKSLEFLDLSENLMVEEYLKN------ 353 (549)
T ss_dssp TTCCEEEEESCBCSCGGGSCCCCHHHHHSTTCCEEEEESSCCCC-CCHHHHHHCTTCCEEECCSSCCCHHHHHH------
T ss_pred cccccccccccccchhhhcccchhhhhhcccceEEEeccCcccc-CCHHHHhcCccccEEEccCCccccccccc------
Confidence 5666666666544321 11112223566666666666653 33333 45666666666666665322110
Q ss_pred cEEeccCcccccccCccccCCCCcCCEEeCCCCcCCcccc--hhhhCCCCCcEEEcCCCccccccchhccCCCCCCEEEc
Q 005038 390 KQVHLSKNMLHGQLKRGTFFNCSSLVTLDLSYNRLNGSIP--DWVDGLSQLSHLILGHNNLEGEVSVQLCELNQLQLLDL 467 (717)
Q Consensus 390 ~~L~l~~n~~~~~~~~~~~~~~~~L~~L~L~~n~~~~~~~--~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L 467 (717)
...+..+++|++|++++|++++..+ ..+..+++|++|++++|+++ ..|..+..+++|++|++
T Consensus 354 ---------------~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~~~~L~~L~L 417 (549)
T 2z81_A 354 ---------------SACKGAWPSLQTLVLSQNHLRSMQKTGEILLTLKNLTSLDISRNTFH-PMPDSCQWPEKMRFLNL 417 (549)
T ss_dssp ---------------HTCTTSSTTCCEEECTTSCCCCHHHHHHHGGGCTTCCEEECTTCCCC-CCCSCCCCCTTCCEEEC
T ss_pred ---------------hhhhhccccCcEEEccCCcccccccchhhhhcCCCCCEEECCCCCCc-cCChhhcccccccEEEC
Confidence 1125567888899999988875432 45788899999999999988 56667788899999999
Q ss_pred cCCcCccCCCcccccccccccccCCCCCCcchhhhhhcccccccccccccceEEEeeccceeeeccccccccceeeCCCC
Q 005038 468 SNNNLHGPIPPCFDNTTLHESYSNSSSPDEQFEIFFSIEGHQGFLEKQNHEIFEFTTKNIAYIYQGKVLSLLSGLDLSCN 547 (717)
Q Consensus 468 ~~n~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n 547 (717)
++|.+++... .+ +++|+.|++++|
T Consensus 418 s~N~l~~l~~-~~-------------------------------------------------------~~~L~~L~Ls~N 441 (549)
T 2z81_A 418 SSTGIRVVKT-CI-------------------------------------------------------PQTLEVLDVSNN 441 (549)
T ss_dssp TTSCCSCCCT-TS-------------------------------------------------------CTTCSEEECCSS
T ss_pred CCCCcccccc-hh-------------------------------------------------------cCCceEEECCCC
Confidence 9998864221 11 136899999999
Q ss_pred ccCCCCcccccCCccCCeEeCCCcccCCCCCcCCCCCCCCCEEECCCCcCCccCchhhcCCCCCCEEeccCCcCeecCC
Q 005038 548 KLIGHIPPQIGNLTRIQTLNLSHNNLTGSIPSTFSNLKHVESLDLSNNKLNGKIPHQLVELKTLEVFSVAYNNLSGEIP 626 (717)
Q Consensus 548 ~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~N~i~~~~p~~~~~l~~L~~L~l~~N~l~~~~p 626 (717)
++++.. ..+++|++|+|++|+++ .+|. ...+++|++|+|++|++++..|+.+..+++|+.|++++|+++|.+|
T Consensus 442 ~l~~~~----~~l~~L~~L~Ls~N~l~-~ip~-~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~ 514 (549)
T 2z81_A 442 NLDSFS----LFLPRLQELYISRNKLK-TLPD-ASLFPVLLVMKISRNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP 514 (549)
T ss_dssp CCSCCC----CCCTTCCEEECCSSCCS-SCCC-GGGCTTCCEEECCSSCCCCCCTTGGGGCTTCCEEECCSSCBCCCHH
T ss_pred Chhhhc----ccCChhcEEECCCCccC-cCCC-cccCccCCEEecCCCccCCcCHHHHhcCcccCEEEecCCCccCCCc
Confidence 998643 57889999999999999 5665 4678999999999999998888889999999999999999999887
No 13
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=100.00 E-value=1.2e-45 Score=410.38 Aligned_cols=466 Identities=21% Similarity=0.211 Sum_probs=388.8
Q ss_pred ccccEEEccCCCCCCCCCchhhcCCCCCCEEEccCCCCcccCChhhhhCCCCCCEEEccCCcCcccCccCcCCCCCcCEE
Q 005038 120 FQLNTLSLSSNYGDGFIFPKFLYHQHDLEYVDLSHIKMNGEFPNWLLENNTKLETLFLVNDSLAGPFRLPIHSHKRLRQL 199 (717)
Q Consensus 120 ~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L 199 (717)
.++++|++ .++.+.+..+..+..+++|++|++++|.+++. +...+.++++|++|++++|.+.+..+..+..+++|++|
T Consensus 28 ~~l~~L~L-s~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~i-~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L 105 (570)
T 2z63_A 28 FSTKNLDL-SFNPLRHLGSYSFFSFPELQVLDLSRCEIQTI-EDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKL 105 (570)
T ss_dssp SSCCEEEC-CSCCCCEECTTTTTTCSSCCEEECTTCCCCEE-CTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEE
T ss_pred ccccEEEc-cCCccCccChhHhhCCCCceEEECCCCcCCcc-CcccccCchhCCEEeCcCCcCCccCHhhhcCccccccc
Confidence 37999999 55566666677899999999999999999854 44445889999999999999998888899999999999
Q ss_pred EccCCcCCccCCccccccCCCCcEEECCCCCCCc-cCCccccCCCCCCEEEccCCccccccchhhhhCCCCC----CEEE
Q 005038 200 DVSNNNIRGHIPVKIGDVLPSLYVFNNSMNALDG-SIPSSFGNMKFLQILDLSNNHLTGEIPEHLAVGCVNL----QFLA 274 (717)
Q Consensus 200 ~ls~n~i~~~~~~~~~~~l~~L~~L~l~~n~~~~-~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~L----~~L~ 274 (717)
++++|.++ .++......+++|++|++++|.+.+ .+|..+.++++|++|++++|.+++ ++...+..+++| ++++
T Consensus 106 ~L~~n~l~-~l~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~l~~n~l~~-~~~~~~~~l~~L~~~~~~L~ 183 (570)
T 2z63_A 106 VAVETNLA-SLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQS-IYCTDLRVLHQMPLLNLSLD 183 (570)
T ss_dssp ECTTSCCC-CSTTCSCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECTTSCCCE-ECGGGGHHHHTCTTCCCEEE
T ss_pred cccccccc-cCCCccccccccccEEecCCCccceecChhhhcccCCCCEEeCcCCccce-ecHHHccchhccchhhhhcc
Confidence 99999998 4554445568999999999999987 478999999999999999999984 443333457777 8999
Q ss_pred ccCcccCccCcccccCCCCCCeEECcCCcCcc-cCcccccCCC--------------------------------CCCEE
Q 005038 275 LSNNNLQGHLFSRNFNLTNLQWLQLEGNRFVG-EIPQSLSKCS--------------------------------SLEGL 321 (717)
Q Consensus 275 L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~-~~~~~~~~l~--------------------------------~L~~L 321 (717)
+++|.+.+..+..+... +|++|++++|.... ..+..+..++ .++.+
T Consensus 184 l~~n~l~~~~~~~~~~~-~L~~L~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~~l~~~~~~~~~~l~~l~l~~l 262 (570)
T 2z63_A 184 LSLNPMNFIQPGAFKEI-RLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEF 262 (570)
T ss_dssp CTTCCCCEECTTTTTTC-EEEEEEEESCCSCTTHHHHHHHTTTTCEEEEEEEEECCCCSSCEECCTTTTGGGGGSEEEEE
T ss_pred cCCCCceecCHHHhccC-cceeEecccccccccchhhhhcCccccceeeeccccccCchhhhhcchhhhccccccchhhh
Confidence 99999998888777665 79999998874321 1111222222 23455
Q ss_pred EccCC-cCcCcCCcccCCCCCCCEEEccCCcccCCcccccCCCCCCCEEEccCCcCcccCCCccccccccEEeccCcccc
Q 005038 322 YLNNN-SLLGKIPRWLGNLTRLQYIIMPNNHLEGPIPVEFCQLDSLQILDISDNNISGSLPSCFHPLSIKQVHLSKNMLH 400 (717)
Q Consensus 322 ~L~~n-~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~L~~L~l~~n~~~ 400 (717)
+++++ .+.+..+..+..+++|+.|++++|.+. .+|..+..+ +|++|++++|.+. .++. ...++|+.+++++|.+.
T Consensus 263 ~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~-~l~~~~~~~-~L~~L~l~~n~~~-~l~~-~~l~~L~~L~l~~n~~~ 338 (570)
T 2z63_A 263 RLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIE-RVKDFSYNF-GWQHLELVNCKFG-QFPT-LKLKSLKRLTFTSNKGG 338 (570)
T ss_dssp EEEETTEEESCSTTTTGGGTTCSEEEEESCEEC-SCCBCCSCC-CCSEEEEESCBCS-SCCB-CBCSSCCEEEEESCBSC
T ss_pred hhhcchhhhhhchhhhcCcCcccEEEecCccch-hhhhhhccC-CccEEeeccCccc-ccCc-ccccccCEEeCcCCccc
Confidence 66655 556677788888999999999999998 477778888 9999999999988 4444 46789999999999987
Q ss_pred cccCccccCCCCcCCEEeCCCCcCCccc--chhhhCCCCCcEEEcCCCccccccchhccCCCCCCEEEccCCcCccCCC-
Q 005038 401 GQLKRGTFFNCSSLVTLDLSYNRLNGSI--PDWVDGLSQLSHLILGHNNLEGEVSVQLCELNQLQLLDLSNNNLHGPIP- 477 (717)
Q Consensus 401 ~~~~~~~~~~~~~L~~L~L~~n~~~~~~--~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~- 477 (717)
+..+. ..+++|++|++++|.+++.. +..+.++++|++|++++|++.+..+. +..+++|+.|++++|.+.+..+
T Consensus 339 ~~~~~---~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~-~~~l~~L~~L~l~~n~l~~~~~~ 414 (570)
T 2z63_A 339 NAFSE---VDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSN-FLGLEQLEHLDFQHSNLKQMSEF 414 (570)
T ss_dssp CBCCC---CBCTTCCEEECCSSCCBEEEEEEHHHHTCSCCCEEECCSCSEEEEEEE-EETCTTCCEEECTTSEEESCTTS
T ss_pred ccccc---ccCCCCCEEeCcCCccCccccccccccccCccCEEECCCCcccccccc-ccccCCCCEEEccCCccccccch
Confidence 65543 57899999999999998654 67889999999999999999976665 8999999999999999987655
Q ss_pred cccccccccccccCCCCCCcchhhhhhcccccccccccccceEEEeeccceeeeccccccccceeeCCCCccCCCCcccc
Q 005038 478 PCFDNTTLHESYSNSSSPDEQFEIFFSIEGHQGFLEKQNHEIFEFTTKNIAYIYQGKVLSLLSGLDLSCNKLIGHIPPQI 557 (717)
Q Consensus 478 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l 557 (717)
..+.. +++|+.|++++|.+.+..|..+
T Consensus 415 ~~~~~-----------------------------------------------------l~~L~~L~l~~n~l~~~~~~~~ 441 (570)
T 2z63_A 415 SVFLS-----------------------------------------------------LRNLIYLDISHTHTRVAFNGIF 441 (570)
T ss_dssp CTTTT-----------------------------------------------------CTTCCEEECTTSCCEECCTTTT
T ss_pred hhhhc-----------------------------------------------------CCCCCEEeCcCCcccccchhhh
Confidence 23333 3479999999999998899999
Q ss_pred cCCccCCeEeCCCcccC-CCCCcCCCCCCCCCEEECCCCcCCccCchhhcCCCCCCEEeccCCcCeecCCCCCcccCCCC
Q 005038 558 GNLTRIQTLNLSHNNLT-GSIPSTFSNLKHVESLDLSNNKLNGKIPHQLVELKTLEVFSVAYNNLSGEIPEWKAQFATFN 636 (717)
Q Consensus 558 ~~l~~L~~L~Ls~n~l~-~~~p~~~~~l~~L~~L~L~~N~i~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~~~~l~ 636 (717)
.++++|++|++++|.++ +.+|..+..+++|++|++++|++++..|..+..+++|++|++++|++++..|..+..+..++
T Consensus 442 ~~l~~L~~L~l~~n~l~~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~ 521 (570)
T 2z63_A 442 NGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMASNQLKSVPDGIFDRLTSLQ 521 (570)
T ss_dssp TTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCC
T ss_pred hcCCcCcEEECcCCcCccccchhhhhcccCCCEEECCCCccccCChhhhhcccCCCEEeCCCCcCCCCCHHHhhcccCCc
Confidence 99999999999999998 57889999999999999999999988899999999999999999999998888888999999
Q ss_pred cccccCCcCCCCCCC
Q 005038 637 ESSYEGNTFLCGLPL 651 (717)
Q Consensus 637 ~~~~~~n~~~c~~~l 651 (717)
.+.+.+|++.|+||.
T Consensus 522 ~L~l~~N~~~~~~~~ 536 (570)
T 2z63_A 522 KIWLHTNPWDCSCPR 536 (570)
T ss_dssp EEECCSSCBCCCTTT
T ss_pred EEEecCCcccCCCcc
Confidence 999999999999874
No 14
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=100.00 E-value=1.2e-45 Score=408.11 Aligned_cols=488 Identities=19% Similarity=0.212 Sum_probs=332.1
Q ss_pred CeeeCCCCCCCCCcchhccCCCCCCEEeCCCCCCcccCCccccCCCCCCCEEECCCCcccCcCCcccccCCCCCCEEEcc
Q 005038 22 QELYIASNDLRGSLPWCMANMTSLRILDVSSNQLTGSISSSPLVHLTSIEELMLSNNYFQIPISLEPLFNYSRLKIFNAE 101 (717)
Q Consensus 22 ~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~i~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~l~ 101 (717)
.+.|.+++.++ .+|..+. ++|++|++++|.++ .++..+|.++++|++|++++|.+++ ++...|.++++|++|+++
T Consensus 8 ~~c~~~~~~l~-~ip~~~~--~~L~~L~Ls~n~l~-~~~~~~~~~l~~L~~L~Ls~n~i~~-~~~~~~~~l~~L~~L~Ls 82 (549)
T 2z81_A 8 GVCDGRSRSFT-SIPSGLT--AAMKSLDLSFNKIT-YIGHGDLRACANLQVLILKSSRINT-IEGDAFYSLGSLEHLDLS 82 (549)
T ss_dssp SEEECTTSCCS-SCCSCCC--TTCCEEECCSSCCC-EECSSTTSSCTTCCEEECTTSCCCE-ECTTTTTTCTTCCEEECT
T ss_pred ceEECCCCccc-cccccCC--CCccEEECcCCccC-ccChhhhhcCCcccEEECCCCCcCc-cChhhccccccCCEEECC
Confidence 34566666666 4444443 66777777777776 3333366677777777777766653 222345555555555555
Q ss_pred CCcccccccccccccCCCccccEEEccCCCCCCCCCchhhcCCCCCCEEEccCCCCcccCChhhhhCCCCCCEEEccCCc
Q 005038 102 NNEIKAEITESHSLIAPKFQLNTLSLSSNYGDGFIFPKFLYHQHDLEYVDLSHIKMNGEFPNWLLENNTKLETLFLVNDS 181 (717)
Q Consensus 102 ~n~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~n~ 181 (717)
+|.+.+ ..+..++.+++|++|++++|.+++.
T Consensus 83 ~n~l~~----------------------------~~~~~~~~l~~L~~L~Ls~n~l~~~--------------------- 113 (549)
T 2z81_A 83 DNHLSS----------------------------LSSSWFGPLSSLKYLNLMGNPYQTL--------------------- 113 (549)
T ss_dssp TSCCCS----------------------------CCHHHHTTCTTCCEEECTTCCCSSS---------------------
T ss_pred CCccCc----------------------------cCHHHhccCCCCcEEECCCCccccc---------------------
Confidence 544331 1223344445555555555544421
Q ss_pred CcccCccCcCCCCCcCEEEccCCcCCccCCccccccCCCCcEEECCCCCCCccCCccccCCCCCCEEEccCCccccccch
Q 005038 182 LAGPFRLPIHSHKRLRQLDVSNNNIRGHIPVKIGDVLPSLYVFNNSMNALDGSIPSSFGNMKFLQILDLSNNHLTGEIPE 261 (717)
Q Consensus 182 ~~~~~~~~~~~~~~L~~L~ls~n~i~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~ 261 (717)
..+..++.+++|++|++++|.+.+.++...+..+++|++|++++|.+.+..|..+..+++|++|+++.|.+. .+|.
T Consensus 114 ---~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~-~~~~ 189 (549)
T 2z81_A 114 ---GVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRNYQSQSLKSIRDIHHLTLHLSESA-FLLE 189 (549)
T ss_dssp ---CSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTTTTTTCSEEEEEEEECSBST-THHH
T ss_pred ---chhhhhhccCCccEEECCCCccccccCHhhhhcccccCeeeccCCcccccChhhhhccccCceEecccCccc-ccch
Confidence 123445556666666666665433555444444667777777777777777788888899999999999887 7777
Q ss_pred hhhhCCCCCCEEEccCcccCccC---cccccCCCCCCeEECcCCcCcccCc----ccccCCCCCCEEEccCCcCcCcCC-
Q 005038 262 HLAVGCVNLQFLALSNNNLQGHL---FSRNFNLTNLQWLQLEGNRFVGEIP----QSLSKCSSLEGLYLNNNSLLGKIP- 333 (717)
Q Consensus 262 ~~~~~~~~L~~L~L~~n~i~~~~---~~~~~~l~~L~~L~L~~n~l~~~~~----~~~~~l~~L~~L~L~~n~~~~~~~- 333 (717)
.++..+++|++|++++|.+.+.. ......+++|++|++++|.+.+..+ ..+..+++|+.+++++|.+.+...
T Consensus 190 ~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~~~~~L~~l~l~~~~~~~~~~~ 269 (549)
T 2z81_A 190 IFADILSSVRYLELRDTNLARFQFSPLPVDEVSSPMKKLAFRGSVLTDESFNELLKLLRYILELSEVEFDDCTLNGLGDF 269 (549)
T ss_dssp HHHHSTTTBSEEEEESCBCTTCCCCCCSSCCCCCCCCEEEEESCEEEHHHHHHHHGGGGGCTTCCEEEEESCEEECCSCC
T ss_pred hhHhhcccccEEEccCCccccccccccchhhhhhcccceeccccccchhHHHHHHHHhhhhccccccccccccccccccc
Confidence 77777899999999999887642 1222356788888888887765433 234566778888888876653211
Q ss_pred -----cccCCCCCCCEEEccCCcccCCcccccCCCCCCCEEEccCCcCcccCCCcc-ccccccEEeccCcccccccCccc
Q 005038 334 -----RWLGNLTRLQYIIMPNNHLEGPIPVEFCQLDSLQILDISDNNISGSLPSCF-HPLSIKQVHLSKNMLHGQLKRGT 407 (717)
Q Consensus 334 -----~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~-~~~~L~~L~l~~n~~~~~~~~~~ 407 (717)
..+..+++++.+++.++.+.... .+..+ +..+ ...+++.+++++|.+. .++...
T Consensus 270 ~~~~~~~~~~l~~L~~L~l~~~~i~~~~--~~~~l-----------------~~~~~~~~~L~~L~l~~n~l~-~ip~~~ 329 (549)
T 2z81_A 270 NPSESDVVSELGKVETVTIRRLHIPQFY--LFYDL-----------------STVYSLLEKVKRITVENSKVF-LVPCSF 329 (549)
T ss_dssp CCCTTTCCCCCTTCCEEEEESCBCSCGG--GSCCC-----------------CHHHHHSTTCCEEEEESSCCC-CCCHHH
T ss_pred cccchhhhhhhcccccccccccccchhh--hcccc-----------------hhhhhhcccceEEEeccCccc-cCCHHH
Confidence 12334445555555554433210 00000 0000 1235666666666653 566654
Q ss_pred cCCCCcCCEEeCCCCcCCcccch---hhhCCCCCcEEEcCCCccccccc--hhccCCCCCCEEEccCCcCccCCCccccc
Q 005038 408 FFNCSSLVTLDLSYNRLNGSIPD---WVDGLSQLSHLILGHNNLEGEVS--VQLCELNQLQLLDLSNNNLHGPIPPCFDN 482 (717)
Q Consensus 408 ~~~~~~L~~L~L~~n~~~~~~~~---~~~~l~~L~~L~L~~n~l~~~~~--~~l~~l~~L~~L~L~~n~l~~~~~~~~~~ 482 (717)
+..+++|++|++++|++.+..|. .+..+++|++|++++|++++..+ ..+..+++|++|++++|++++ +|..+..
T Consensus 330 ~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~-lp~~~~~ 408 (549)
T 2z81_A 330 SQHLKSLEFLDLSENLMVEEYLKNSACKGAWPSLQTLVLSQNHLRSMQKTGEILLTLKNLTSLDISRNTFHP-MPDSCQW 408 (549)
T ss_dssp HHHCTTCCEEECCSSCCCHHHHHHHTCTTSSTTCCEEECTTSCCCCHHHHHHHGGGCTTCCEEECTTCCCCC-CCSCCCC
T ss_pred HhcCccccEEEccCCccccccccchhhhhccccCcEEEccCCcccccccchhhhhcCCCCCEEECCCCCCcc-CChhhcc
Confidence 56789999999999999876643 36789999999999999986643 568899999999999999973 4544333
Q ss_pred ccccccccCCCCCCcchhhhhhcccccccccccccceEEEeeccceeeeccccccccceeeCCCCccCCCCcccccCCcc
Q 005038 483 TTLHESYSNSSSPDEQFEIFFSIEGHQGFLEKQNHEIFEFTTKNIAYIYQGKVLSLLSGLDLSCNKLIGHIPPQIGNLTR 562 (717)
Q Consensus 483 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~ 562 (717)
+++|++|++++|++++ +|..+ .++
T Consensus 409 -----------------------------------------------------~~~L~~L~Ls~N~l~~-l~~~~--~~~ 432 (549)
T 2z81_A 409 -----------------------------------------------------PEKMRFLNLSSTGIRV-VKTCI--PQT 432 (549)
T ss_dssp -----------------------------------------------------CTTCCEEECTTSCCSC-CCTTS--CTT
T ss_pred -----------------------------------------------------cccccEEECCCCCccc-ccchh--cCC
Confidence 3479999999999984 44433 268
Q ss_pred CCeEeCCCcccCCCCCcCCCCCCCCCEEECCCCcCCccCchhhcCCCCCCEEeccCCcCeecCCCCCcccCCCCcccccC
Q 005038 563 IQTLNLSHNNLTGSIPSTFSNLKHVESLDLSNNKLNGKIPHQLVELKTLEVFSVAYNNLSGEIPEWKAQFATFNESSYEG 642 (717)
Q Consensus 563 L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~N~i~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~~~~l~~~~~~~ 642 (717)
|++|++++|++++. +..+++|++|+|++|+++ .+|+ ...+++|++|++++|++++..|.++..+..++.+.+.+
T Consensus 433 L~~L~Ls~N~l~~~----~~~l~~L~~L~Ls~N~l~-~ip~-~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~ 506 (549)
T 2z81_A 433 LEVLDVSNNNLDSF----SLFLPRLQELYISRNKLK-TLPD-ASLFPVLLVMKISRNQLKSVPDGIFDRLTSLQKIWLHT 506 (549)
T ss_dssp CSEEECCSSCCSCC----CCCCTTCCEEECCSSCCS-SCCC-GGGCTTCCEEECCSSCCCCCCTTGGGGCTTCCEEECCS
T ss_pred ceEEECCCCChhhh----cccCChhcEEECCCCccC-cCCC-cccCccCCEEecCCCccCCcCHHHHhcCcccCEEEecC
Confidence 99999999999964 257899999999999998 6675 46799999999999999999999889999999999999
Q ss_pred CcCCCCCC
Q 005038 643 NTFLCGLP 650 (717)
Q Consensus 643 n~~~c~~~ 650 (717)
||+.|+|+
T Consensus 507 N~~~~~~~ 514 (549)
T 2z81_A 507 NPWDCSCP 514 (549)
T ss_dssp SCBCCCHH
T ss_pred CCccCCCc
Confidence 99999986
No 15
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=100.00 E-value=4.9e-45 Score=411.51 Aligned_cols=560 Identities=20% Similarity=0.187 Sum_probs=347.9
Q ss_pred cceeeCcccccCC-CCCCeeeCCCCCCCCCcchhccCCCCCCEEeCCCCCCcccCCccccCCCCCCCEEECCCCcccCcC
Q 005038 6 VNGVVRSQGLCSL-VHLQELYIASNDLRGSLPWCMANMTSLRILDVSSNQLTGSISSSPLVHLTSIEELMLSNNYFQIPI 84 (717)
Q Consensus 6 ~~g~i~~~~~~~l-~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~i~~~~~~~l~~L~~L~L~~n~~~~~~ 84 (717)
++ +||. ++ +.+++|||++|+|+++.+.+|.++++|++|||++|+|+ .+++.+|.++++|++|+|++|+++ .+
T Consensus 43 l~-~vP~----~lp~~~~~LdLs~N~i~~l~~~~f~~l~~L~~L~Ls~N~i~-~i~~~~f~~L~~L~~L~Ls~N~l~-~l 115 (635)
T 4g8a_A 43 FY-KIPD----NLPFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQ-TIEDGAYQSLSHLSTLILTGNPIQ-SL 115 (635)
T ss_dssp CS-SCCS----SSCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCC-EECTTTTTTCTTCCEEECTTCCCC-EE
T ss_pred cC-ccCC----CCCcCCCEEEeeCCCCCCCCHHHHhCCCCCCEEECCCCcCC-CcChhHhcCCCCCCEEEccCCcCC-CC
Confidence 44 5664 33 37899999999999777788999999999999999998 777768999999999999999887 45
Q ss_pred CcccccCCCCCCEEEccCCcccccccccccccCCCccccEEEccCCCCCCCCCchhhcCCCCCCEEEccCCCCcccCChh
Q 005038 85 SLEPLFNYSRLKIFNAENNEIKAEITESHSLIAPKFQLNTLSLSSNYGDGFIFPKFLYHQHDLEYVDLSHIKMNGEFPNW 164 (717)
Q Consensus 85 ~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~ 164 (717)
+...|.++++|++|++++|+++...+.. +..+++|++|++++|.......|..+..+++|++|++++|.+++..+..
T Consensus 116 ~~~~f~~L~~L~~L~Ls~N~l~~l~~~~---~~~L~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~ 192 (635)
T 4g8a_A 116 ALGAFSGLSSLQKLVAVETNLASLENFP---IGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTD 192 (635)
T ss_dssp CGGGGTTCTTCCEEECTTSCCCCSTTCC---CTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGGG
T ss_pred CHHHhcCCCCCCEEECCCCcCCCCChhh---hhcCcccCeeccccCccccCCCchhhccchhhhhhcccCcccccccccc
Confidence 6677889999999999999887654333 4556678888885554434456777777788888888888777554443
Q ss_pred hhhCCC----CCCEEEccCCcCcccCccCcCCCCCcCEEEccCCcCCccCCccccccCCCCcEEECCCCCC------Ccc
Q 005038 165 LLENNT----KLETLFLVNDSLAGPFRLPIHSHKRLRQLDVSNNNIRGHIPVKIGDVLPSLYVFNNSMNAL------DGS 234 (717)
Q Consensus 165 ~~~~~~----~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~ls~n~i~~~~~~~~~~~l~~L~~L~l~~n~~------~~~ 234 (717)
+ ..+. ....++++.|.+....+..+ ....++.+++++|.....+.......++.++...+..+.. ...
T Consensus 193 l-~~L~~l~~~~~~~~ls~n~l~~i~~~~~-~~~~~~~l~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~~l~~~ 270 (635)
T 4g8a_A 193 L-RVLHQMPLLNLSLDLSLNPMNFIQPGAF-KEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKF 270 (635)
T ss_dssp G-HHHHTCTTCCCEEECTTCCCCEECTTTT-TTCEEEEEEEESCCSSHHHHHHHHHTTTTCEEEEEEEECCTTSCCCSCC
T ss_pred c-cchhhhhhhhhhhhcccCcccccCcccc-cchhhhhhhhhcccccccccchhhcCCcccccccccccccccccccccc
Confidence 2 2222 23466677776665443333 2334566677666554333333333344554444332211 111
Q ss_pred CCccccCCCCCCEEEccCCcccc---ccchhhhhCCCCCCEEEccCcccCccCcccccCCCCCCeEECcCCcCcccCccc
Q 005038 235 IPSSFGNMKFLQILDLSNNHLTG---EIPEHLAVGCVNLQFLALSNNNLQGHLFSRNFNLTNLQWLQLEGNRFVGEIPQS 311 (717)
Q Consensus 235 ~~~~l~~l~~L~~L~Ls~n~l~~---~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~ 311 (717)
....+.....+...++..+.... .+.. .+....+++.+.+.++.+... ..+.....++.|++.+|.+....+
T Consensus 271 ~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~-~~~~~~~l~~l~~~~~~~~~~--~~~~~~~~L~~L~l~~~~~~~~~~-- 345 (635)
T 4g8a_A 271 DKSALEGLCNLTIEEFRLAYLDYYLDGIID-LFNCLTNVSSFSLVSVTIERV--KDFSYNFGWQHLELVNCKFGQFPT-- 345 (635)
T ss_dssp CTTTTGGGGGSEEEEEEEECCCSCEEECTT-TTGGGTTCSEEEEESCEEEEC--GGGGSCCCCSEEEEESCEESSCCC--
T ss_pred cccccccccchhhhhhhhhhhcccccchhh-hhhhhcccccccccccccccc--cccccchhhhhhhcccccccCcCc--
Confidence 22223333334444333322110 0111 111234455555554444322 122333445555555554443221
Q ss_pred ccCCCCCCEEEccCCcCcCcCCcccCCCCCCCEEEccCCcccC--CcccccCCCCCCCEEEccCCcCcccCCCccccccc
Q 005038 312 LSKCSSLEGLYLNNNSLLGKIPRWLGNLTRLQYIIMPNNHLEG--PIPVEFCQLDSLQILDISDNNISGSLPSCFHPLSI 389 (717)
Q Consensus 312 ~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~--~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~L 389 (717)
..+..|+.+++.+|..... .....+++|+.+++++|.+.. ..+..+..+.+ +
T Consensus 346 -~~l~~L~~l~l~~n~~~~~--~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~-----------------------L 399 (635)
T 4g8a_A 346 -LKLKSLKRLTFTSNKGGNA--FSEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTIS-----------------------L 399 (635)
T ss_dssp -CBCTTCCEEEEESCCSCCB--CCCCBCTTCCEEECCSSCCBEEEECCHHHHSCSC-----------------------C
T ss_pred -ccchhhhhcccccccCCCC--cccccccccccchhhccccccccccccchhhhhh-----------------------h
Confidence 1233444455444443321 112234444455544444321 12222333444 4
Q ss_pred cEEeccCcccccccCccccCCCCcCCEEeCCCCcCCcccc-hhhhCCCCCcEEEcCCCccccccchhccCCCCCCEEEcc
Q 005038 390 KQVHLSKNMLHGQLKRGTFFNCSSLVTLDLSYNRLNGSIP-DWVDGLSQLSHLILGHNNLEGEVSVQLCELNQLQLLDLS 468 (717)
Q Consensus 390 ~~L~l~~n~~~~~~~~~~~~~~~~L~~L~L~~n~~~~~~~-~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~ 468 (717)
+.+++..+.... ... .+..+++|+.++++.+......+ ..+..+++++.++++.|.+.+..+..+..+++|+.|+++
T Consensus 400 ~~L~~~~~~~~~-~~~-~~~~l~~L~~l~l~~~~~~~~~~~~~~~~l~~l~~l~ls~n~l~~~~~~~~~~~~~L~~L~Ls 477 (635)
T 4g8a_A 400 KYLDLSFNGVIT-MSS-NFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMA 477 (635)
T ss_dssp CEEECCSCSEEE-ECS-CCTTCTTCCEEECTTSEEESTTSSCTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECT
T ss_pred hhhhcccccccc-ccc-cccccccccchhhhhccccccccccccccccccccccccccccccccccccccchhhhhhhhh
Confidence 455544444422 222 26677888888888776554433 456778888888888888888888888888888888888
Q ss_pred CCcCc-cCCCcccccccccccccCCCCCCcchhhhhhcccccccccccccceEEEeeccceeeeccccccccceeeCCCC
Q 005038 469 NNNLH-GPIPPCFDNTTLHESYSNSSSPDEQFEIFFSIEGHQGFLEKQNHEIFEFTTKNIAYIYQGKVLSLLSGLDLSCN 547 (717)
Q Consensus 469 ~n~l~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n 547 (717)
+|.+. +..|..|..+ ++|++|+|++|
T Consensus 478 ~N~~~~~~~~~~~~~l-----------------------------------------------------~~L~~L~Ls~N 504 (635)
T 4g8a_A 478 GNSFQENFLPDIFTEL-----------------------------------------------------RNLTFLDLSQC 504 (635)
T ss_dssp TCEEGGGEECSCCTTC-----------------------------------------------------TTCCEEECTTS
T ss_pred hcccccccCchhhhhc-----------------------------------------------------cccCEEECCCC
Confidence 88743 3345444433 37888888888
Q ss_pred ccCCCCcccccCCccCCeEeCCCcccCCCCCcCCCCCCCCCEEECCCCcCCccCchhhcCC-CCCCEEeccCCcCeecCC
Q 005038 548 KLIGHIPPQIGNLTRIQTLNLSHNNLTGSIPSTFSNLKHVESLDLSNNKLNGKIPHQLVEL-KTLEVFSVAYNNLSGEIP 626 (717)
Q Consensus 548 ~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~N~i~~~~p~~~~~l-~~L~~L~l~~N~l~~~~p 626 (717)
++++..|..|.++++|++|+|++|++++..|..|.++++|++|+|++|++++..|+.+..+ ++|++|++++|+++|.+.
T Consensus 505 ~L~~l~~~~f~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~~L~~L~L~~Np~~C~C~ 584 (635)
T 4g8a_A 505 QLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFACTCE 584 (635)
T ss_dssp CCCEECTTTTTTCTTCCEEECTTSCCCBCCCGGGTTCTTCCEEECTTSCCCBCCSSCTTCCCTTCCEEECTTCCBCCSGG
T ss_pred ccCCcChHHHcCCCCCCEEECCCCcCCCCChhHHhCCCCCCEEECCCCcCCCCCHHHHHhhhCcCCEEEeeCCCCcccCC
Confidence 8888888889999999999999999998888889999999999999999998888888887 689999999999988654
Q ss_pred -CCCcccCCCCcccccCCcCCCCCCCCCCCCCCCCCCCCCCCCC
Q 005038 627 -EWKAQFATFNESSYEGNTFLCGLPLPICRSPATMPEASIGNEQ 669 (717)
Q Consensus 627 -~~~~~~~~l~~~~~~~n~~~c~~~l~~C~~~~~~~~~~~~~~~ 669 (717)
.|+.+|. + ......-+.....|.+|...+|+++.+++
T Consensus 585 ~~~~~~wl--~----~~~~~~~~~~~~~C~~P~~~~g~~l~~~~ 622 (635)
T 4g8a_A 585 HQSFLQWI--K----DQRQLLVEVERMECATPSDKQGMPVLSLN 622 (635)
T ss_dssp GHHHHHHH--H----HTTTTBSCGGGCBBCSSTTTTTCBGGGCC
T ss_pred cHHHHHHH--H----hCCCccCCCCCceeCCchHHCCCEeeeec
Confidence 2222221 0 01111111122349999999998776664
No 16
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=100.00 E-value=4e-46 Score=415.88 Aligned_cols=394 Identities=20% Similarity=0.250 Sum_probs=279.6
Q ss_pred CCcCcccCccCcCCCCCcCEEEccCCcCCcc-----------------CCcccc-ccCCCCcEEECCCCCCCccCCcccc
Q 005038 179 NDSLAGPFRLPIHSHKRLRQLDVSNNNIRGH-----------------IPVKIG-DVLPSLYVFNNSMNALDGSIPSSFG 240 (717)
Q Consensus 179 ~n~~~~~~~~~~~~~~~L~~L~ls~n~i~~~-----------------~~~~~~-~~l~~L~~L~l~~n~~~~~~~~~l~ 240 (717)
.|.+++ +|..++++++|++|++++|.+++. +|..+. ..+++|++|++++|.+.+.+|..+.
T Consensus 192 ~n~l~~-ip~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~ip~~l~~~~l~~L~~L~L~~n~l~~~~p~~l~ 270 (636)
T 4eco_A 192 SNNITF-VSKAVMRLTKLRQFYMGNSPFVAENICEAWENENSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNLTKLPTFLK 270 (636)
T ss_dssp SCEEEE-ECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEECCTTCSSCCTTTT
T ss_pred cCCCcc-CCHHHhcccCCCEEECcCCccccccccccccccccchhcccCchhhhhcccCCCCEEEecCCcCCccChHHHh
Confidence 466776 677788888888888888888864 676665 2367888888888888778888888
Q ss_pred CCCCCCEEEccCCc-ccc-ccchhhhh-----CCCCCCEEEccCcccCccCcc--cccCCCCCCeEECcCCcCcccCccc
Q 005038 241 NMKFLQILDLSNNH-LTG-EIPEHLAV-----GCVNLQFLALSNNNLQGHLFS--RNFNLTNLQWLQLEGNRFVGEIPQS 311 (717)
Q Consensus 241 ~l~~L~~L~Ls~n~-l~~-~~~~~~~~-----~~~~L~~L~L~~n~i~~~~~~--~~~~l~~L~~L~L~~n~l~~~~~~~ 311 (717)
++++|++|++++|+ +++ .+|..+.. .+++|++|++++|.++ .+|. .+..+++|++|++++|.+.+.+| .
T Consensus 271 ~l~~L~~L~Ls~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~l~-~ip~~~~l~~l~~L~~L~L~~N~l~g~ip-~ 348 (636)
T 4eco_A 271 ALPEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLK-TFPVETSLQKMKKLGMLECLYNQLEGKLP-A 348 (636)
T ss_dssp TCSSCCEEECTTCTTSCHHHHHHHHHHHHHSGGGGTCCEEECCSSCCS-SCCCHHHHTTCTTCCEEECCSCCCEEECC-C
T ss_pred cCCCCCEEECcCCCCCccccchHHHHhhhccccCCCCCEEECCCCcCC-ccCchhhhccCCCCCEEeCcCCcCccchh-h
Confidence 88888888888887 776 67776653 1377888888887777 5666 67777777777777777776666 6
Q ss_pred ccCCCCCCEEEccCCcCcCcCCcccCCCCC-CCEEEccCCcccCCcccccCCCC--CCCEEEccCCcCcccCCCcccccc
Q 005038 312 LSKCSSLEGLYLNNNSLLGKIPRWLGNLTR-LQYIIMPNNHLEGPIPVEFCQLD--SLQILDISDNNISGSLPSCFHPLS 388 (717)
Q Consensus 312 ~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~-L~~L~l~~n~~~~~~~~~~~~l~--~L~~L~l~~n~~~~~~~~~~~~~~ 388 (717)
+..+++|++|++++|.+. .+|..+..+++ |+.|++++|.++ .+|..+..++ +|++|++++|.+.+..|..+..
T Consensus 349 ~~~l~~L~~L~L~~N~l~-~lp~~l~~l~~~L~~L~Ls~N~l~-~lp~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~-- 424 (636)
T 4eco_A 349 FGSEIKLASLNLAYNQIT-EIPANFCGFTEQVENLSFAHNKLK-YIPNIFDAKSVSVMSAIDFSYNEIGSVDGKNFDP-- 424 (636)
T ss_dssp CEEEEEESEEECCSSEEE-ECCTTSEEECTTCCEEECCSSCCS-SCCSCCCTTCSSCEEEEECCSSCTTTTTTCSSCT--
T ss_pred hCCCCCCCEEECCCCccc-cccHhhhhhcccCcEEEccCCcCc-ccchhhhhcccCccCEEECcCCcCCCcchhhhcc--
Confidence 777777777777777776 66666777777 777777777777 4566655543 6777777777776555443220
Q ss_pred ccEEeccCcccccccCccccCCCCcCCEEeCCCCcCCcccchhhhCCCCCcEEEcCCCccccccchhccCCC-------C
Q 005038 389 IKQVHLSKNMLHGQLKRGTFFNCSSLVTLDLSYNRLNGSIPDWVDGLSQLSHLILGHNNLEGEVSVQLCELN-------Q 461 (717)
Q Consensus 389 L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~-------~ 461 (717)
.... ...+++|++|++++|.++...+..+..+++|++|++++|+++...+..+.... +
T Consensus 425 --------------~~~~-~~~~~~L~~L~Ls~N~l~~lp~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~~~~~~~~l~~ 489 (636)
T 4eco_A 425 --------------LDPT-PFKGINVSSINLSNNQISKFPKELFSTGSPLSSINLMGNMLTEIPKNSLKDENENFKNTYL 489 (636)
T ss_dssp --------------TCSS-CCCCCCEEEEECCSSCCCSCCTHHHHTTCCCSEEECCSSCCSBCCSSSSEETTEECTTGGG
T ss_pred --------------cccc-cccCCCCCEEECcCCccCcCCHHHHccCCCCCEEECCCCCCCCcCHHHhccccccccccCC
Confidence 0000 11456788888888888855555566788888888888888844444444333 8
Q ss_pred CCEEEccCCcCccCCCcccccccccccccCCCCCCcchhhhhhcccccccccccccceEEEeeccceeeeccccccccce
Q 005038 462 LQLLDLSNNNLHGPIPPCFDNTTLHESYSNSSSPDEQFEIFFSIEGHQGFLEKQNHEIFEFTTKNIAYIYQGKVLSLLSG 541 (717)
Q Consensus 462 L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~ 541 (717)
|+.|++++|+++ .+|..+.. ..+++|+.
T Consensus 490 L~~L~Ls~N~l~-~lp~~~~~---------------------------------------------------~~l~~L~~ 517 (636)
T 4eco_A 490 LTSIDLRFNKLT-KLSDDFRA---------------------------------------------------TTLPYLVG 517 (636)
T ss_dssp CCEEECCSSCCC-BCCGGGST---------------------------------------------------TTCTTCCE
T ss_pred ccEEECcCCcCC-ccChhhhh---------------------------------------------------ccCCCcCE
Confidence 888888888887 44443320 01347888
Q ss_pred eeCCCCccCCCCcccccCCccCCeEeC------CCcccCCCCCcCCCCCCCCCEEECCCCcCCccCchhhcCCCCCCEEe
Q 005038 542 LDLSCNKLIGHIPPQIGNLTRIQTLNL------SHNNLTGSIPSTFSNLKHVESLDLSNNKLNGKIPHQLVELKTLEVFS 615 (717)
Q Consensus 542 L~L~~n~l~~~~~~~l~~l~~L~~L~L------s~n~l~~~~p~~~~~l~~L~~L~L~~N~i~~~~p~~~~~l~~L~~L~ 615 (717)
|+|++|++++ +|..+..+++|++|+| ++|++.+.+|..+..+++|++|+|++|++ +.+|..+. ++|+.|+
T Consensus 518 L~Ls~N~l~~-ip~~~~~l~~L~~L~Ls~N~~ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l-~~ip~~~~--~~L~~L~ 593 (636)
T 4eco_A 518 IDLSYNSFSK-FPTQPLNSSTLKGFGIRNQRDAQGNRTLREWPEGITLCPSLTQLQIGSNDI-RKVNEKIT--PNISVLD 593 (636)
T ss_dssp EECCSSCCSS-CCCGGGGCSSCCEEECCSCBCTTCCBCCCCCCTTGGGCSSCCEEECCSSCC-CBCCSCCC--TTCCEEE
T ss_pred EECCCCCCCC-cChhhhcCCCCCEEECCCCcccccCcccccChHHHhcCCCCCEEECCCCcC-CccCHhHh--CcCCEEE
Confidence 8888888886 7888888889999988 56778888999999999999999999999 47777655 7899999
Q ss_pred ccCCcCeecCCCCCccc--CCCCcccccCCcCCCCCC
Q 005038 616 VAYNNLSGEIPEWKAQF--ATFNESSYEGNTFLCGLP 650 (717)
Q Consensus 616 l~~N~l~~~~p~~~~~~--~~l~~~~~~~n~~~c~~~ 650 (717)
+++|++.+.-+..+... .....+.+.....+|+|+
T Consensus 594 Ls~N~l~~~~~~~~~~~~~~~~~~l~~~~~~~i~~C~ 630 (636)
T 4eco_A 594 IKDNPNISIDLSYVCPYIEAGMYMLFYDKTQDIRGCD 630 (636)
T ss_dssp CCSCTTCEEECTTTHHHHHTTCCEEECCTTSEEESCG
T ss_pred CcCCCCccccHHhcchhhhcccceeecCCccccCCCc
Confidence 99998886544332221 222334445555555654
No 17
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=100.00 E-value=7.6e-45 Score=398.58 Aligned_cols=462 Identities=18% Similarity=0.186 Sum_probs=293.0
Q ss_pred CeeeCCCCCCCCCcchhccCCCCCCEEeCCCCCCcccCCccccCCCCCCCEEECCCCcccCcCCcccccCCCCCCEEEcc
Q 005038 22 QELYIASNDLRGSLPWCMANMTSLRILDVSSNQLTGSISSSPLVHLTSIEELMLSNNYFQIPISLEPLFNYSRLKIFNAE 101 (717)
Q Consensus 22 ~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~i~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~l~ 101 (717)
++||+++|+++ .+|..+. ++|++|++++|.++ .++...|.++++|++|++++|.+++ +....|.++++|++|+++
T Consensus 3 ~~l~ls~n~l~-~ip~~~~--~~L~~L~Ls~n~i~-~~~~~~~~~l~~L~~L~Ls~n~l~~-~~~~~~~~l~~L~~L~Ls 77 (520)
T 2z7x_B 3 FLVDRSKNGLI-HVPKDLS--QKTTILNISQNYIS-ELWTSDILSLSKLRILIISHNRIQY-LDISVFKFNQELEYLDLS 77 (520)
T ss_dssp CEEECTTSCCS-SCCCSCC--TTCSEEECCSSCCC-CCCHHHHTTCTTCCEEECCSSCCCE-EEGGGGTTCTTCCEEECC
T ss_pred ceEecCCCCcc-ccccccc--ccccEEECCCCccc-ccChhhccccccccEEecCCCccCC-cChHHhhcccCCCEEecC
Confidence 57899999998 5666665 89999999999998 5554478899999999999998874 333568888888888888
Q ss_pred CCcccccccccccccCCCccccEEEccCCCCCCCCCchhhcCCCCCCEEEccCCCCcc-cCChhhhhCCCCCCEEEccCC
Q 005038 102 NNEIKAEITESHSLIAPKFQLNTLSLSSNYGDGFIFPKFLYHQHDLEYVDLSHIKMNG-EFPNWLLENNTKLETLFLVND 180 (717)
Q Consensus 102 ~n~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~-~~~~~~~~~~~~L~~L~l~~n 180 (717)
+|.++.. |.. .+++|++|++++|.+++ .+|..+ .++++|++|++++|
T Consensus 78 ~N~l~~l-----------------------------p~~--~l~~L~~L~L~~N~l~~~~~p~~~-~~l~~L~~L~L~~n 125 (520)
T 2z7x_B 78 HNKLVKI-----------------------------SCH--PTVNLKHLDLSFNAFDALPICKEF-GNMSQLKFLGLSTT 125 (520)
T ss_dssp SSCCCEE-----------------------------ECC--CCCCCSEEECCSSCCSSCCCCGGG-GGCTTCCEEEEEES
T ss_pred CCceeec-----------------------------Ccc--ccCCccEEeccCCccccccchhhh-ccCCcceEEEecCc
Confidence 8876521 111 45788888888888875 355554 67788888888888
Q ss_pred cCcccCccCcCCCCCc--CEEEccCCcC--CccCCccccccCCCCcEEECCCCCCCccCC-ccccCCCCCCEEEccCCcc
Q 005038 181 SLAGPFRLPIHSHKRL--RQLDVSNNNI--RGHIPVKIGDVLPSLYVFNNSMNALDGSIP-SSFGNMKFLQILDLSNNHL 255 (717)
Q Consensus 181 ~~~~~~~~~~~~~~~L--~~L~ls~n~i--~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~-~~l~~l~~L~~L~Ls~n~l 255 (717)
.+.+ ..+..+++| ++|++++|.+ .+..|..+...-.+...+++++|.+.+.++ ..+..+++|+.|++++|..
T Consensus 126 ~l~~---~~~~~l~~L~L~~L~l~~n~l~~~~~~~~~l~~l~~~~l~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~ 202 (520)
T 2z7x_B 126 HLEK---SSVLPIAHLNISKVLLVLGETYGEKEDPEGLQDFNTESLHIVFPTNKEFHFILDVSVKTVANLELSNIKCVLE 202 (520)
T ss_dssp SCCG---GGGGGGTTSCEEEEEEEECTTTTSSCCTTTTTTCCEEEEEEECCSSSCCCCCCCCCCTTCSEEEECCEEECCS
T ss_pred ccch---hhccccccceeeEEEeecccccccccccccccccccceEEEEeccCcchhhhhhhhhhcccceeecccccccc
Confidence 7765 344555556 7777777777 444444332211112234444444443222 2334445555555555430
Q ss_pred ccccchhhhhCCCCCCEEEccCcccCccCcccccCCCCCCeEECcCCcCcccCcccc---cCCCCCCEEEccCCcCcCcC
Q 005038 256 TGEIPEHLAVGCVNLQFLALSNNNLQGHLFSRNFNLTNLQWLQLEGNRFVGEIPQSL---SKCSSLEGLYLNNNSLLGKI 332 (717)
Q Consensus 256 ~~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~---~~l~~L~~L~L~~n~~~~~~ 332 (717)
..... .+.+..+ .+..+++|++|++++|.+.+..+..+ ...++|++|++++|.+.+.+
T Consensus 203 ~~~~~------------------~~~~~~~-~l~~l~~L~~L~l~~~~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~ 263 (520)
T 2z7x_B 203 DNKCS------------------YFLSILA-KLQTNPKLSNLTLNNIETTWNSFIRILQLVWHTTVWYFSISNVKLQGQL 263 (520)
T ss_dssp TTTTH------------------HHHHHHH-GGGGCTTCCEEEEEEEEEEHHHHHHHHHHHHTSSCSEEEEEEEEEESCC
T ss_pred ccccc------------------eeecchh-hhccccchhhccccccccCHHHHHHHHHHhhhCcccEEEeecccccCcc
Confidence 00000 0222222 33444444555444444332111100 01235555555555555445
Q ss_pred Cccc-----CCCCCCCEEEccCCcccCCcccccCCC---CCCCEEEccCCcCcccCCCccccccccEEeccCcccccccC
Q 005038 333 PRWL-----GNLTRLQYIIMPNNHLEGPIPVEFCQL---DSLQILDISDNNISGSLPSCFHPLSIKQVHLSKNMLHGQLK 404 (717)
Q Consensus 333 ~~~~-----~~l~~L~~L~l~~n~~~~~~~~~~~~l---~~L~~L~l~~n~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~ 404 (717)
|..+ ..+++|+.+++++|.+ ......+..+ .+|+.|++++|.+.. ..
T Consensus 264 p~~~~~~~~~~l~~L~~l~l~~n~~-~~p~~~~~~~~~~~~L~~L~l~~n~l~~-----------------------~~- 318 (520)
T 2z7x_B 264 DFRDFDYSGTSLKALSIHQVVSDVF-GFPQSYIYEIFSNMNIKNFTVSGTRMVH-----------------------ML- 318 (520)
T ss_dssp CCCCCCCCSCCCCEEEEEEEEECCC-CSCTHHHHHHHHTCCCSEEEEESSCCCC-----------------------CC-
T ss_pred ccchhhcccccCceeEeccccccce-ecchhhhhcccccCceeEEEcCCCcccc-----------------------cc-
Confidence 5444 4455555555555554 1111222222 345555555554431 11
Q ss_pred ccccCCCCcCCEEeCCCCcCCcccchhhhCCCCCcEEEcCCCcccc--ccchhccCCCCCCEEEccCCcCccCCCc-ccc
Q 005038 405 RGTFFNCSSLVTLDLSYNRLNGSIPDWVDGLSQLSHLILGHNNLEG--EVSVQLCELNQLQLLDLSNNNLHGPIPP-CFD 481 (717)
Q Consensus 405 ~~~~~~~~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~--~~~~~l~~l~~L~~L~L~~n~l~~~~~~-~~~ 481 (717)
.+..+++|++|++++|++++..|..+..+++|++|++++|++++ ..|..+..+++|++|++++|++.+.+|. .+.
T Consensus 319 --~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~l~~L~~L~Ls~N~l~~~l~~~~~~ 396 (520)
T 2z7x_B 319 --CPSKISPFLHLDFSNNLLTDTVFENCGHLTELETLILQMNQLKELSKIAEMTTQMKSLQQLDISQNSVSYDEKKGDCS 396 (520)
T ss_dssp --CCSSCCCCCEEECCSSCCCTTTTTTCCCCSSCCEEECCSSCCCBHHHHHHHHTTCTTCCEEECCSSCCBCCGGGCSCC
T ss_pred --chhhCCcccEEEeECCccChhhhhhhccCCCCCEEEccCCccCccccchHHHhhCCCCCEEECCCCcCCcccccchhc
Confidence 02456778888888888887777777888888888888888875 3456677888888888888888763332 222
Q ss_pred cccccccccCCCCCCcchhhhhhcccccccccccccceEEEeeccceeeeccccccccceeeCCCCccCCCCcccccCCc
Q 005038 482 NTTLHESYSNSSSPDEQFEIFFSIEGHQGFLEKQNHEIFEFTTKNIAYIYQGKVLSLLSGLDLSCNKLIGHIPPQIGNLT 561 (717)
Q Consensus 482 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~ 561 (717)
. +++|+.|++++|++++..|..+. +
T Consensus 397 ~-----------------------------------------------------l~~L~~L~Ls~N~l~~~~~~~l~--~ 421 (520)
T 2z7x_B 397 W-----------------------------------------------------TKSLLSLNMSSNILTDTIFRCLP--P 421 (520)
T ss_dssp C-----------------------------------------------------CTTCCEEECCSSCCCGGGGGSCC--T
T ss_pred c-----------------------------------------------------CccCCEEECcCCCCCcchhhhhc--c
Confidence 2 23688888888888776666554 7
Q ss_pred cCCeEeCCCcccCCCCCcCCCCCCCCCEEECCCCcCCccCch-hhcCCCCCCEEeccCCcCeecCC
Q 005038 562 RIQTLNLSHNNLTGSIPSTFSNLKHVESLDLSNNKLNGKIPH-QLVELKTLEVFSVAYNNLSGEIP 626 (717)
Q Consensus 562 ~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~N~i~~~~p~-~~~~l~~L~~L~l~~N~l~~~~p 626 (717)
+|++|++++|+++ .+|..+..+++|++|++++|+++. +|. .+..+++|++|++++|+++|.++
T Consensus 422 ~L~~L~Ls~N~l~-~ip~~~~~l~~L~~L~L~~N~l~~-l~~~~~~~l~~L~~L~l~~N~~~c~c~ 485 (520)
T 2z7x_B 422 RIKVLDLHSNKIK-SIPKQVVKLEALQELNVASNQLKS-VPDGIFDRLTSLQKIWLHTNPWDCSCP 485 (520)
T ss_dssp TCCEEECCSSCCC-CCCGGGGGCTTCCEEECCSSCCCC-CCTTTTTTCTTCCEEECCSSCBCCCHH
T ss_pred cCCEEECCCCccc-ccchhhhcCCCCCEEECCCCcCCc-cCHHHhccCCcccEEECcCCCCcccCC
Confidence 8999999999998 677777789999999999999984 554 48889999999999999998765
No 18
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=100.00 E-value=1e-45 Score=412.53 Aligned_cols=366 Identities=18% Similarity=0.214 Sum_probs=302.4
Q ss_pred CCCCCccCCccccCCCCCCEEEccCCccccc-----------------cchhhh-hCCCCCCEEEccCcccCccCccccc
Q 005038 228 MNALDGSIPSSFGNMKFLQILDLSNNHLTGE-----------------IPEHLA-VGCVNLQFLALSNNNLQGHLFSRNF 289 (717)
Q Consensus 228 ~n~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~-----------------~~~~~~-~~~~~L~~L~L~~n~i~~~~~~~~~ 289 (717)
.|.+++ +|..++++++|++|++++|.+++. +|..+. ..+++|++|++++|.+.+.+|..+.
T Consensus 192 ~n~l~~-ip~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~ip~~l~~~~l~~L~~L~L~~n~l~~~~p~~l~ 270 (636)
T 4eco_A 192 SNNITF-VSKAVMRLTKLRQFYMGNSPFVAENICEAWENENSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNLTKLPTFLK 270 (636)
T ss_dssp SCEEEE-ECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEECCTTCSSCCTTTT
T ss_pred cCCCcc-CCHHHhcccCCCEEECcCCccccccccccccccccchhcccCchhhhhcccCCCCEEEecCCcCCccChHHHh
Confidence 467777 788888899999999999988864 777664 2488899999999988888888888
Q ss_pred CCCCCCeEECcCCc-Ccc-cCcccccCC------CCCCEEEccCCcCcCcCCc--ccCCCCCCCEEEccCCcccCCcccc
Q 005038 290 NLTNLQWLQLEGNR-FVG-EIPQSLSKC------SSLEGLYLNNNSLLGKIPR--WLGNLTRLQYIIMPNNHLEGPIPVE 359 (717)
Q Consensus 290 ~l~~L~~L~L~~n~-l~~-~~~~~~~~l------~~L~~L~L~~n~~~~~~~~--~~~~l~~L~~L~l~~n~~~~~~~~~ 359 (717)
++++|++|++++|+ +++ .+|..+..+ ++|++|++++|.+. .+|. .+..+++|+.|++++|.+.+.+| .
T Consensus 271 ~l~~L~~L~Ls~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~l~-~ip~~~~l~~l~~L~~L~L~~N~l~g~ip-~ 348 (636)
T 4eco_A 271 ALPEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLK-TFPVETSLQKMKKLGMLECLYNQLEGKLP-A 348 (636)
T ss_dssp TCSSCCEEECTTCTTSCHHHHHHHHHHHHHSGGGGTCCEEECCSSCCS-SCCCHHHHTTCTTCCEEECCSCCCEEECC-C
T ss_pred cCCCCCEEECcCCCCCccccchHHHHhhhccccCCCCCEEECCCCcCC-ccCchhhhccCCCCCEEeCcCCcCccchh-h
Confidence 89999999999998 877 677777665 88999999999888 7777 88888999999999998887777 8
Q ss_pred cCCCCCCCEEEccCCcCcccCCCcccccc-ccEEeccCcccccccCccccCCC--CcCCEEeCCCCcCCcccchhhh---
Q 005038 360 FCQLDSLQILDISDNNISGSLPSCFHPLS-IKQVHLSKNMLHGQLKRGTFFNC--SSLVTLDLSYNRLNGSIPDWVD--- 433 (717)
Q Consensus 360 ~~~l~~L~~L~l~~n~~~~~~~~~~~~~~-L~~L~l~~n~~~~~~~~~~~~~~--~~L~~L~L~~n~~~~~~~~~~~--- 433 (717)
+..+++|++|++++|.+..........++ |+.|++++|.+. .++.. +... ++|++|++++|.+.+..|..+.
T Consensus 349 ~~~l~~L~~L~L~~N~l~~lp~~l~~l~~~L~~L~Ls~N~l~-~lp~~-~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~~~ 426 (636)
T 4eco_A 349 FGSEIKLASLNLAYNQITEIPANFCGFTEQVENLSFAHNKLK-YIPNI-FDAKSVSVMSAIDFSYNEIGSVDGKNFDPLD 426 (636)
T ss_dssp CEEEEEESEEECCSSEEEECCTTSEEECTTCCEEECCSSCCS-SCCSC-CCTTCSSCEEEEECCSSCTTTTTTCSSCTTC
T ss_pred hCCCCCCCEEECCCCccccccHhhhhhcccCcEEEccCCcCc-ccchh-hhhcccCccCEEECcCCcCCCcchhhhcccc
Confidence 88888999999999988833333344677 999999999886 56654 5554 4899999999999998888887
Q ss_pred ----CCCCCcEEEcCCCccccccchhccCCCCCCEEEccCCcCccCCCcccccccccccccCCCCCCcchhhhhhccccc
Q 005038 434 ----GLSQLSHLILGHNNLEGEVSVQLCELNQLQLLDLSNNNLHGPIPPCFDNTTLHESYSNSSSPDEQFEIFFSIEGHQ 509 (717)
Q Consensus 434 ----~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 509 (717)
.+++|++|++++|++++..+..+..+++|+.|++++|.++...+..+....
T Consensus 427 ~~~~~~~~L~~L~Ls~N~l~~lp~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~~~------------------------- 481 (636)
T 4eco_A 427 PTPFKGINVSSINLSNNQISKFPKELFSTGSPLSSINLMGNMLTEIPKNSLKDEN------------------------- 481 (636)
T ss_dssp SSCCCCCCEEEEECCSSCCCSCCTHHHHTTCCCSEEECCSSCCSBCCSSSSEETT-------------------------
T ss_pred cccccCCCCCEEECcCCccCcCCHHHHccCCCCCEEECCCCCCCCcCHHHhcccc-------------------------
Confidence 788999999999999976666777899999999999999844433332211
Q ss_pred ccccccccceEEEeeccceeeeccccccccceeeCCCCccCCCCccccc--CCccCCeEeCCCcccCCCCCcCCCCCCCC
Q 005038 510 GFLEKQNHEIFEFTTKNIAYIYQGKVLSLLSGLDLSCNKLIGHIPPQIG--NLTRIQTLNLSHNNLTGSIPSTFSNLKHV 587 (717)
Q Consensus 510 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~--~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L 587 (717)
...+.+++|+.|+|++|+++ .+|..+. .+++|++|+|++|++++ +|..+..+++|
T Consensus 482 ---------------------~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~~~l~~L~~L~Ls~N~l~~-ip~~~~~l~~L 538 (636)
T 4eco_A 482 ---------------------ENFKNTYLLTSIDLRFNKLT-KLSDDFRATTLPYLVGIDLSYNSFSK-FPTQPLNSSTL 538 (636)
T ss_dssp ---------------------EECTTGGGCCEEECCSSCCC-BCCGGGSTTTCTTCCEEECCSSCCSS-CCCGGGGCSSC
T ss_pred ---------------------ccccccCCccEEECcCCcCC-ccChhhhhccCCCcCEEECCCCCCCC-cChhhhcCCCC
Confidence 00112347999999999999 6788876 99999999999999997 89999999999
Q ss_pred CEEEC------CCCcCCccCchhhcCCCCCCEEeccCCcCeecCCCCCcccCCCCcccccCCcCCCCC
Q 005038 588 ESLDL------SNNKLNGKIPHQLVELKTLEVFSVAYNNLSGEIPEWKAQFATFNESSYEGNTFLCGL 649 (717)
Q Consensus 588 ~~L~L------~~N~i~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~~~~l~~~~~~~n~~~c~~ 649 (717)
++|+| ++|++.+.+|..+..+++|++|++++|++ +.+|..+. .+++.+.+.+|++.|-.
T Consensus 539 ~~L~Ls~N~~ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l-~~ip~~~~--~~L~~L~Ls~N~l~~~~ 603 (636)
T 4eco_A 539 KGFGIRNQRDAQGNRTLREWPEGITLCPSLTQLQIGSNDI-RKVNEKIT--PNISVLDIKDNPNISID 603 (636)
T ss_dssp CEEECCSCBCTTCCBCCCCCCTTGGGCSSCCEEECCSSCC-CBCCSCCC--TTCCEEECCSCTTCEEE
T ss_pred CEEECCCCcccccCcccccChHHHhcCCCCCEEECCCCcC-CccCHhHh--CcCCEEECcCCCCcccc
Confidence 99999 56788889999999999999999999999 68888654 78999999999998743
No 19
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=100.00 E-value=9.7e-43 Score=392.74 Aligned_cols=535 Identities=20% Similarity=0.178 Sum_probs=384.6
Q ss_pred CeeeCCCCCCCCCcchhccCCCCCCEEeCCCCCCcccCCccccCCCCCCCEEECCCCcccCcCCcccccCCCCCCEEEcc
Q 005038 22 QELYIASNDLRGSLPWCMANMTSLRILDVSSNQLTGSISSSPLVHLTSIEELMLSNNYFQIPISLEPLFNYSRLKIFNAE 101 (717)
Q Consensus 22 ~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~i~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~l~ 101 (717)
++.+-++.+++ .+|..+. +++++|||++|+|+ .++..+|.++++|++|+|++|.+++ ++..+|.++++|++|+|+
T Consensus 34 ~~~~c~~~~l~-~vP~~lp--~~~~~LdLs~N~i~-~l~~~~f~~l~~L~~L~Ls~N~i~~-i~~~~f~~L~~L~~L~Ls 108 (635)
T 4g8a_A 34 ITYQCMELNFY-KIPDNLP--FSTKNLDLSFNPLR-HLGSYSFFSFPELQVLDLSRCEIQT-IEDGAYQSLSHLSTLILT 108 (635)
T ss_dssp TEEECTTSCCS-SCCSSSC--TTCCEEECTTSCCC-EECTTTTTTCTTCCEEECTTCCCCE-ECTTTTTTCTTCCEEECT
T ss_pred CEEECCCCCcC-ccCCCCC--cCCCEEEeeCCCCC-CCCHHHHhCCCCCCEEECCCCcCCC-cChhHhcCCCCCCEEEcc
Confidence 35566777777 5565553 58999999999998 7877789999999999999999984 565789999999999999
Q ss_pred CCcccccccccccccCCCccccEEEccCCCCCCCCCchhhcCCCCCCEEEccCCCCcccCChhhhhCCCCCCEEEccCCc
Q 005038 102 NNEIKAEITESHSLIAPKFQLNTLSLSSNYGDGFIFPKFLYHQHDLEYVDLSHIKMNGEFPNWLLENNTKLETLFLVNDS 181 (717)
Q Consensus 102 ~n~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~n~ 181 (717)
+|+++... +..|..+++|++|++++|.++ .++...+.++++|++|++++|.
T Consensus 109 ~N~l~~l~----------------------------~~~f~~L~~L~~L~Ls~N~l~-~l~~~~~~~L~~L~~L~Ls~N~ 159 (635)
T 4g8a_A 109 GNPIQSLA----------------------------LGAFSGLSSLQKLVAVETNLA-SLENFPIGHLKTLKELNVAHNL 159 (635)
T ss_dssp TCCCCEEC----------------------------GGGGTTCTTCCEEECTTSCCC-CSTTCCCTTCTTCCEEECCSSC
T ss_pred CCcCCCCC----------------------------HHHhcCCCCCCEEECCCCcCC-CCChhhhhcCcccCeeccccCc
Confidence 99876432 234555666666666666666 3444334666677777777776
Q ss_pred Cccc-CccCcCCCCCcCEEEccCCcCCccCCccccc---cCCCCcEEECCCCCCCccCCccccCCCCCCEEEccCCcccc
Q 005038 182 LAGP-FRLPIHSHKRLRQLDVSNNNIRGHIPVKIGD---VLPSLYVFNNSMNALDGSIPSSFGNMKFLQILDLSNNHLTG 257 (717)
Q Consensus 182 ~~~~-~~~~~~~~~~L~~L~ls~n~i~~~~~~~~~~---~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~Ls~n~l~~ 257 (717)
+... .+..++.+++|++|++++|.+++..+..+.. .......++++.|.+....+..+ ....++.+++.+|....
T Consensus 160 l~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~l~~L~~l~~~~~~~~ls~n~l~~i~~~~~-~~~~~~~l~l~~n~~~~ 238 (635)
T 4g8a_A 160 IQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAF-KEIRLHKLTLRNNFDSL 238 (635)
T ss_dssp CCCCCCCGGGGGCTTCCEEECCSSCCCEECGGGGHHHHTCTTCCCEEECTTCCCCEECTTTT-TTCEEEEEEEESCCSSH
T ss_pred cccCCCchhhccchhhhhhcccCccccccccccccchhhhhhhhhhhhcccCcccccCcccc-cchhhhhhhhhcccccc
Confidence 6543 3455666777777777777776443333221 11123456777777765444433 33456677777776654
Q ss_pred ccchhhhhCCCCCCEEEccCccc------CccCcccccCCCCCCeEECcCCcCcc---cCcccccCCCCCCEEEccCCcC
Q 005038 258 EIPEHLAVGCVNLQFLALSNNNL------QGHLFSRNFNLTNLQWLQLEGNRFVG---EIPQSLSKCSSLEGLYLNNNSL 328 (717)
Q Consensus 258 ~~~~~~~~~~~~L~~L~L~~n~i------~~~~~~~~~~l~~L~~L~L~~n~l~~---~~~~~~~~l~~L~~L~L~~n~~ 328 (717)
.++...+.++..++...+..+.. .......+.....+...++..+.... ..+..+....+++.+++.++.+
T Consensus 239 ~~~~~~~~~l~~l~~~~l~~~~~~~~~~l~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~ 318 (635)
T 4g8a_A 239 NVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDGIIDLFNCLTNVSSFSLVSVTI 318 (635)
T ss_dssp HHHHHHHHTTTTCEEEEEEEECCTTSCCCSCCCTTTTGGGGGSEEEEEEEECCCSCEEECTTTTGGGTTCSEEEEESCEE
T ss_pred cccchhhcCCcccccccccccccccccccccccccccccccchhhhhhhhhhhcccccchhhhhhhhccccccccccccc
Confidence 55555566677777666643322 22223334444555555554433221 2233455667788888888776
Q ss_pred cCcCCcccCCCCCCCEEEccCCcccCCcccccCCCCCCCEEEccCCcCcccCCCccccccccEEeccCccccccc-Cccc
Q 005038 329 LGKIPRWLGNLTRLQYIIMPNNHLEGPIPVEFCQLDSLQILDISDNNISGSLPSCFHPLSIKQVHLSKNMLHGQL-KRGT 407 (717)
Q Consensus 329 ~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~L~~L~l~~n~~~~~~-~~~~ 407 (717)
... ..+.....++.|++.+|.+.+..+. .+..|+.+++..|.... .+.....++|+.+++++|.+.... ....
T Consensus 319 ~~~--~~~~~~~~L~~L~l~~~~~~~~~~~---~l~~L~~l~l~~n~~~~-~~~~~~l~~L~~L~ls~n~l~~~~~~~~~ 392 (635)
T 4g8a_A 319 ERV--KDFSYNFGWQHLELVNCKFGQFPTL---KLKSLKRLTFTSNKGGN-AFSEVDLPSLEFLDLSRNGLSFKGCCSQS 392 (635)
T ss_dssp EEC--GGGGSCCCCSEEEEESCEESSCCCC---BCTTCCEEEEESCCSCC-BCCCCBCTTCCEEECCSSCCBEEEECCHH
T ss_pred ccc--cccccchhhhhhhcccccccCcCcc---cchhhhhcccccccCCC-Ccccccccccccchhhccccccccccccc
Confidence 533 2345567788888888887654433 35677888888877653 333345678888888888774321 1223
Q ss_pred cCCCCcCCEEeCCCCcCCcccchhhhCCCCCcEEEcCCCcccccc-chhccCCCCCCEEEccCCcCccCCCccccccccc
Q 005038 408 FFNCSSLVTLDLSYNRLNGSIPDWVDGLSQLSHLILGHNNLEGEV-SVQLCELNQLQLLDLSNNNLHGPIPPCFDNTTLH 486 (717)
Q Consensus 408 ~~~~~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~-~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~ 486 (717)
+..+.+|+++++..+.... .+..+..+++|+.++++++...... ...+..+++++.++++.|.+.+..+..+...
T Consensus 393 ~~~~~~L~~L~~~~~~~~~-~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~l~~l~~l~ls~n~l~~~~~~~~~~~--- 468 (635)
T 4g8a_A 393 DFGTISLKYLDLSFNGVIT-MSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGL--- 468 (635)
T ss_dssp HHSCSCCCEEECCSCSEEE-ECSCCTTCTTCCEEECTTSEEESTTSSCTTTTCTTCCEEECTTSCCEECCTTTTTTC---
T ss_pred hhhhhhhhhhhcccccccc-ccccccccccccchhhhhccccccccccccccccccccccccccccccccccccccc---
Confidence 5567889999999988774 4556778999999999988776544 3567889999999999999987777665543
Q ss_pred ccccCCCCCCcchhhhhhcccccccccccccceEEEeeccceeeeccccccccceeeCCCCccC-CCCcccccCCccCCe
Q 005038 487 ESYSNSSSPDEQFEIFFSIEGHQGFLEKQNHEIFEFTTKNIAYIYQGKVLSLLSGLDLSCNKLI-GHIPPQIGNLTRIQT 565 (717)
Q Consensus 487 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~-~~~~~~l~~l~~L~~ 565 (717)
+.++.|++++|.+. +..|..|..+++|++
T Consensus 469 --------------------------------------------------~~L~~L~Ls~N~~~~~~~~~~~~~l~~L~~ 498 (635)
T 4g8a_A 469 --------------------------------------------------SSLEVLKMAGNSFQENFLPDIFTELRNLTF 498 (635)
T ss_dssp --------------------------------------------------TTCCEEECTTCEEGGGEECSCCTTCTTCCE
T ss_pred --------------------------------------------------hhhhhhhhhhcccccccCchhhhhccccCE
Confidence 37999999999854 456788999999999
Q ss_pred EeCCCcccCCCCCcCCCCCCCCCEEECCCCcCCccCchhhcCCCCCCEEeccCCcCeecCCCCCccc-CCCCcccccCCc
Q 005038 566 LNLSHNNLTGSIPSTFSNLKHVESLDLSNNKLNGKIPHQLVELKTLEVFSVAYNNLSGEIPEWKAQF-ATFNESSYEGNT 644 (717)
Q Consensus 566 L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~N~i~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~~-~~l~~~~~~~n~ 644 (717)
|+|++|+++++.|..|+++++|++|+|++|++++..|..|..+++|++||+++|++++..|..+..+ .+++.+.+.+||
T Consensus 499 L~Ls~N~L~~l~~~~f~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~~L~~L~L~~Np 578 (635)
T 4g8a_A 499 LDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQND 578 (635)
T ss_dssp EECTTSCCCEECTTTTTTCTTCCEEECTTSCCCBCCCGGGTTCTTCCEEECTTSCCCBCCSSCTTCCCTTCCEEECTTCC
T ss_pred EECCCCccCCcChHHHcCCCCCCEEECCCCcCCCCChhHHhCCCCCCEEECCCCcCCCCCHHHHHhhhCcCCEEEeeCCC
Confidence 9999999999999999999999999999999998889999999999999999999999999988877 679999999999
Q ss_pred CCCCCCC
Q 005038 645 FLCGLPL 651 (717)
Q Consensus 645 ~~c~~~l 651 (717)
|.|+|.+
T Consensus 579 ~~C~C~~ 585 (635)
T 4g8a_A 579 FACTCEH 585 (635)
T ss_dssp BCCSGGG
T ss_pred CcccCCc
Confidence 9999865
No 20
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=100.00 E-value=3.8e-44 Score=405.25 Aligned_cols=383 Identities=21% Similarity=0.246 Sum_probs=255.8
Q ss_pred CcCCccCCccccccCCCCcEEECCCCCCCc-----------------cCCcccc--CCCCCCEEEccCCccccccchhhh
Q 005038 204 NNIRGHIPVKIGDVLPSLYVFNNSMNALDG-----------------SIPSSFG--NMKFLQILDLSNNHLTGEIPEHLA 264 (717)
Q Consensus 204 n~i~~~~~~~~~~~l~~L~~L~l~~n~~~~-----------------~~~~~l~--~l~~L~~L~Ls~n~l~~~~~~~~~ 264 (717)
|.+++ +|..+.. +++|++|++++|.+++ .+|..++ ++++|++|++++|.+.+.+|..+.
T Consensus 435 N~L~~-IP~~l~~-L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~iP~~l~f~~L~~L~~L~Ls~N~l~~~iP~~l~ 512 (876)
T 4ecn_A 435 NRITF-ISKAIQR-LTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTDVELYNCPNMTQLPDFLY 512 (876)
T ss_dssp CEEEE-ECGGGGG-CTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEESCTTCCSCCGGGG
T ss_pred Ccccc-hhHHHhc-CCCCCEEECcCCcCCCCcccccccccccccccccCChhhhhccCCCCCEEECcCCCCCccChHHHh
Confidence 44443 4444333 4555555555555554 2555555 666666666666666556664443
Q ss_pred hCCCCCCEEEccCcc-cCc-cCccccc-------CCCCCCeEECcCCcCcccCcc--cccCCCCCCEEEccCCcCcCcCC
Q 005038 265 VGCVNLQFLALSNNN-LQG-HLFSRNF-------NLTNLQWLQLEGNRFVGEIPQ--SLSKCSSLEGLYLNNNSLLGKIP 333 (717)
Q Consensus 265 ~~~~~L~~L~L~~n~-i~~-~~~~~~~-------~l~~L~~L~L~~n~l~~~~~~--~~~~l~~L~~L~L~~n~~~~~~~ 333 (717)
.+++|++|++++|+ +++ .+|..+. .+++|++|++++|.+. .+|. .+..+++|+.|++++|.+. .+|
T Consensus 513 -~L~~L~~L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L~-~ip~~~~l~~L~~L~~L~Ls~N~l~-~lp 589 (876)
T 4ecn_A 513 -DLPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLE-EFPASASLQKMVKLGLLDCVHNKVR-HLE 589 (876)
T ss_dssp -GCSSCCEEECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSCCC-BCCCHHHHTTCTTCCEEECTTSCCC-BCC
T ss_pred -CCCCCCEEECcCCCCcccccchHHHHhhhhcccccCCccEEEeeCCcCC-ccCChhhhhcCCCCCEEECCCCCcc-cch
Confidence 36666666666665 554 4444333 3346666666666666 5555 6666666666666666666 555
Q ss_pred cccCCCCCCCEEEccCCcccCCcccccCCCCC-CCEEEccCCcCcccCCCcccc---ccccEEeccCcccccccCccc--
Q 005038 334 RWLGNLTRLQYIIMPNNHLEGPIPVEFCQLDS-LQILDISDNNISGSLPSCFHP---LSIKQVHLSKNMLHGQLKRGT-- 407 (717)
Q Consensus 334 ~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~-L~~L~l~~n~~~~~~~~~~~~---~~L~~L~l~~n~~~~~~~~~~-- 407 (717)
.|..+++|+.|++++|.+. .+|..+..+++ |+.|++++|.+. .+|..+.. .+|+.|++++|.+.+.++...
T Consensus 590 -~~~~L~~L~~L~Ls~N~l~-~lp~~l~~l~~~L~~L~Ls~N~L~-~lp~~~~~~~~~~L~~L~Ls~N~l~g~ip~l~~~ 666 (876)
T 4ecn_A 590 -AFGTNVKLTDLKLDYNQIE-EIPEDFCAFTDQVEGLGFSHNKLK-YIPNIFNAKSVYVMGSVDFSYNKIGSEGRNISCS 666 (876)
T ss_dssp -CCCTTSEESEEECCSSCCS-CCCTTSCEECTTCCEEECCSSCCC-SCCSCCCTTCSSCEEEEECCSSCTTTTSSSCSSC
T ss_pred -hhcCCCcceEEECcCCccc-cchHHHhhccccCCEEECcCCCCC-cCchhhhccccCCCCEEECcCCcCCCccccchhh
Confidence 5666666666777666666 55556666666 777777766666 44444432 236677777776655443210
Q ss_pred cC--CCCcCCEEeCCCCcCCcccchhhhCCCCCcEEEcCCCccccccchhccCC-------CCCCEEEccCCcCccCCCc
Q 005038 408 FF--NCSSLVTLDLSYNRLNGSIPDWVDGLSQLSHLILGHNNLEGEVSVQLCEL-------NQLQLLDLSNNNLHGPIPP 478 (717)
Q Consensus 408 ~~--~~~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l-------~~L~~L~L~~n~l~~~~~~ 478 (717)
+. .+++|++|++++|.+....+..+..+++|+.|++++|+++......+... ++|+.|+|++|+++ .+|.
T Consensus 667 l~~~~~~~L~~L~Ls~N~L~~lp~~~~~~l~~L~~L~Ls~N~L~~ip~~~~~~~~~~l~nl~~L~~L~Ls~N~L~-~lp~ 745 (876)
T 4ecn_A 667 MDDYKGINASTVTLSYNEIQKFPTELFATGSPISTIILSNNLMTSIPENSLKPKDGNYKNTYLLTTIDLRFNKLT-SLSD 745 (876)
T ss_dssp TTTCCCCCEEEEECCSSCCCSCCHHHHHTTCCCSEEECCSCCCSCCCTTSSSCTTSCCTTGGGCCEEECCSSCCC-CCCG
T ss_pred hccccCCCcCEEEccCCcCCccCHHHHccCCCCCEEECCCCcCCccChHHhccccccccccCCccEEECCCCCCc-cchH
Confidence 11 34589999999999985444445688999999999999984444333332 38999999999987 4554
Q ss_pred ccccccccccccCCCCCCcchhhhhhcccccccccccccceEEEeeccceeeeccccccccceeeCCCCccCCCCccccc
Q 005038 479 CFDNTTLHESYSNSSSPDEQFEIFFSIEGHQGFLEKQNHEIFEFTTKNIAYIYQGKVLSLLSGLDLSCNKLIGHIPPQIG 558 (717)
Q Consensus 479 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~ 558 (717)
.+.. ..+++|+.|+|++|++++ +|..+.
T Consensus 746 ~l~~---------------------------------------------------~~l~~L~~L~Ls~N~L~~-lp~~l~ 773 (876)
T 4ecn_A 746 DFRA---------------------------------------------------TTLPYLSNMDVSYNCFSS-FPTQPL 773 (876)
T ss_dssp GGST---------------------------------------------------TTCTTCCEEECCSSCCSS-CCCGGG
T ss_pred Hhhh---------------------------------------------------ccCCCcCEEEeCCCCCCc-cchhhh
Confidence 4430 013479999999999996 688889
Q ss_pred CCccCCeEeCCC------cccCCCCCcCCCCCCCCCEEECCCCcCCccCchhhcCCCCCCEEeccCCcCeecCCCCCccc
Q 005038 559 NLTRIQTLNLSH------NNLTGSIPSTFSNLKHVESLDLSNNKLNGKIPHQLVELKTLEVFSVAYNNLSGEIPEWKAQF 632 (717)
Q Consensus 559 ~l~~L~~L~Ls~------n~l~~~~p~~~~~l~~L~~L~L~~N~i~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~~ 632 (717)
.+++|+.|+|++ |++.+.+|..|..+++|++|+|++|++ +.+|..+. ++|+.|++++|++....+..+...
T Consensus 774 ~L~~L~~L~Ls~N~~ls~N~l~~~ip~~l~~L~~L~~L~Ls~N~L-~~Ip~~l~--~~L~~LdLs~N~l~~i~~~~~~~~ 850 (876)
T 4ecn_A 774 NSSQLKAFGIRHQRDAEGNRILRQWPTGITTCPSLIQLQIGSNDI-RKVDEKLT--PQLYILDIADNPNISIDVTSVCPY 850 (876)
T ss_dssp GCTTCCEEECCCCBCTTCCBCCCCCCTTGGGCSSCCEEECCSSCC-CBCCSCCC--SSSCEEECCSCTTCEEECGGGHHH
T ss_pred cCCCCCEEECCCCCCcccccccccChHHHhcCCCCCEEECCCCCC-CccCHhhc--CCCCEEECCCCCCCccChHHcccc
Confidence 999999999976 788889999999999999999999999 58888765 699999999999987766655544
Q ss_pred CCCCcccccCCcCCC--CCC
Q 005038 633 ATFNESSYEGNTFLC--GLP 650 (717)
Q Consensus 633 ~~l~~~~~~~n~~~c--~~~ 650 (717)
.......+.+|+..+ +||
T Consensus 851 ~~~~~~~L~~n~~~~I~gC~ 870 (876)
T 4ecn_A 851 IEAGMYVLLYDKTQDIRGCD 870 (876)
T ss_dssp HHTTCCEEECCTTSEEESCG
T ss_pred ccchheeecCCCccccCCCC
Confidence 444455566665544 654
No 21
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=100.00 E-value=5e-43 Score=384.14 Aligned_cols=456 Identities=20% Similarity=0.189 Sum_probs=327.5
Q ss_pred CCCCCcceeeCcccccCCCCCCeeeCCCCCCCCCcchhccCCCCCCEEeCCCCCCcccCCccccCCCCCCCEEECCCCcc
Q 005038 1 MSSCEVNGVVRSQGLCSLVHLQELYIASNDLRGSLPWCMANMTSLRILDVSSNQLTGSISSSPLVHLTSIEELMLSNNYF 80 (717)
Q Consensus 1 l~~~~~~g~i~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~i~~~~~~~l~~L~~L~L~~n~~ 80 (717)
+|+|+++ .||. .+. ++|++|++++|.+++..|.+|.++++|++|+|++|+++ .+++..|.++++|++|++++|.+
T Consensus 7 ls~n~l~-~ip~-~~~--~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~-~~~~~~~~~l~~L~~L~Ls~N~l 81 (520)
T 2z7x_B 7 RSKNGLI-HVPK-DLS--QKTTILNISQNYISELWTSDILSLSKLRILIISHNRIQ-YLDISVFKFNQELEYLDLSHNKL 81 (520)
T ss_dssp CTTSCCS-SCCC-SCC--TTCSEEECCSSCCCCCCHHHHTTCTTCCEEECCSSCCC-EEEGGGGTTCTTCCEEECCSSCC
T ss_pred cCCCCcc-cccc-ccc--ccccEEECCCCcccccChhhccccccccEEecCCCccC-CcChHHhhcccCCCEEecCCCce
Confidence 6889999 7885 444 89999999999999888899999999999999999998 45434899999999999999999
Q ss_pred cCcCCcccccCCCCCCEEEccCCcccccccccccccCCCccccEEEccCCCCCCCCCchhhcCCCCCCEEEccCCCCccc
Q 005038 81 QIPISLEPLFNYSRLKIFNAENNEIKAEITESHSLIAPKFQLNTLSLSSNYGDGFIFPKFLYHQHDLEYVDLSHIKMNGE 160 (717)
Q Consensus 81 ~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~ 160 (717)
+ .++.. .+++|++|++++|.+... .+|..++.+++|++|++++|.+.+.
T Consensus 82 ~-~lp~~---~l~~L~~L~L~~N~l~~~---------------------------~~p~~~~~l~~L~~L~L~~n~l~~~ 130 (520)
T 2z7x_B 82 V-KISCH---PTVNLKHLDLSFNAFDAL---------------------------PICKEFGNMSQLKFLGLSTTHLEKS 130 (520)
T ss_dssp C-EEECC---CCCCCSEEECCSSCCSSC---------------------------CCCGGGGGCTTCCEEEEEESSCCGG
T ss_pred e-ecCcc---ccCCccEEeccCCccccc---------------------------cchhhhccCCcceEEEecCcccchh
Confidence 8 34432 788999999988876531 2456778888899999998888752
Q ss_pred CChhhhhCCCCC--CEEEccCCcC--cccCccCcCCCC-CcCEEEccCCcCCccCCccccccCCCCcEEECCCCC-----
Q 005038 161 FPNWLLENNTKL--ETLFLVNDSL--AGPFRLPIHSHK-RLRQLDVSNNNIRGHIPVKIGDVLPSLYVFNNSMNA----- 230 (717)
Q Consensus 161 ~~~~~~~~~~~L--~~L~l~~n~~--~~~~~~~~~~~~-~L~~L~ls~n~i~~~~~~~~~~~l~~L~~L~l~~n~----- 230 (717)
.+..+++| +.|++++|.+ .+..+..+..+. +...+++++|.+.+.++......+++|+.+++++|.
T Consensus 131 ----~~~~l~~L~L~~L~l~~n~l~~~~~~~~~l~~l~~~~l~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~ 206 (520)
T 2z7x_B 131 ----SVLPIAHLNISKVLLVLGETYGEKEDPEGLQDFNTESLHIVFPTNKEFHFILDVSVKTVANLELSNIKCVLEDNKC 206 (520)
T ss_dssp ----GGGGGTTSCEEEEEEEECTTTTSSCCTTTTTTCCEEEEEEECCSSSCCCCCCCCCCTTCSEEEECCEEECCSTTTT
T ss_pred ----hccccccceeeEEEeecccccccccccccccccccceEEEEeccCcchhhhhhhhhhcccceeecccccccccccc
Confidence 23567777 9999999988 666676666655 344678899998888888777778999999999987
Q ss_pred --CCccCCccccCCCCCCEEEccCCccccccchhhhh--CCCCCCEEEccCcccCccCcccc-----cCCCCCCeEECcC
Q 005038 231 --LDGSIPSSFGNMKFLQILDLSNNHLTGEIPEHLAV--GCVNLQFLALSNNNLQGHLFSRN-----FNLTNLQWLQLEG 301 (717)
Q Consensus 231 --~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~--~~~~L~~L~L~~n~i~~~~~~~~-----~~l~~L~~L~L~~ 301 (717)
+.+.+| .+..+++|+.|++++|.+.+..+..+.. ..++|++|++++|.+.+.+|..+ ..+++|+.+++++
T Consensus 207 ~~~~~~~~-~l~~l~~L~~L~l~~~~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~~~l~~L~~l~l~~ 285 (520)
T 2z7x_B 207 SYFLSILA-KLQTNPKLSNLTLNNIETTWNSFIRILQLVWHTTVWYFSISNVKLQGQLDFRDFDYSGTSLKALSIHQVVS 285 (520)
T ss_dssp HHHHHHHH-GGGGCTTCCEEEEEEEEEEHHHHHHHHHHHHTSSCSEEEEEEEEEESCCCCCCCCCCSCCCCEEEEEEEEE
T ss_pred ceeecchh-hhccccchhhccccccccCHHHHHHHHHHhhhCcccEEEeecccccCccccchhhcccccCceeEeccccc
Confidence 555555 6888899999999988877543333221 13567777777777766566655 4555555555555
Q ss_pred CcCcccCc-ccccCCCCCCEEEccCCcCcCcCCcccCCCCCCCEEEccCCcccCCcccccCCCCCCCEEEccCCcCcccC
Q 005038 302 NRFVGEIP-QSLSKCSSLEGLYLNNNSLLGKIPRWLGNLTRLQYIIMPNNHLEGPIPVEFCQLDSLQILDISDNNISGSL 380 (717)
Q Consensus 302 n~l~~~~~-~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~ 380 (717)
|.+ .+| ..+..+ ....+|+.|++++|.+.... ....+++|++|++++|++.+..
T Consensus 286 n~~--~~p~~~~~~~---------------------~~~~~L~~L~l~~n~l~~~~--~~~~l~~L~~L~Ls~n~l~~~~ 340 (520)
T 2z7x_B 286 DVF--GFPQSYIYEI---------------------FSNMNIKNFTVSGTRMVHML--CPSKISPFLHLDFSNNLLTDTV 340 (520)
T ss_dssp CCC--CSCTHHHHHH---------------------HHTCCCSEEEEESSCCCCCC--CCSSCCCCCEEECCSSCCCTTT
T ss_pred cce--ecchhhhhcc---------------------cccCceeEEEcCCCcccccc--chhhCCcccEEEeECCccChhh
Confidence 554 222 222222 00033444444444443211 1134556666666666555322
Q ss_pred CCccccccccEEeccCcccccccCccccCCCCcCCEEeCCCCcCCc--ccchhhhCCCCCcEEEcCCCccccccc-hhcc
Q 005038 381 PSCFHPLSIKQVHLSKNMLHGQLKRGTFFNCSSLVTLDLSYNRLNG--SIPDWVDGLSQLSHLILGHNNLEGEVS-VQLC 457 (717)
Q Consensus 381 ~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~L~~n~~~~--~~~~~~~~l~~L~~L~L~~n~l~~~~~-~~l~ 457 (717)
+. .+..+++|++|++++|++.+ .+|..+..+++|++|++++|++++..| ..+.
T Consensus 341 ~~------------------------~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~l~~L~~L~Ls~N~l~~~l~~~~~~ 396 (520)
T 2z7x_B 341 FE------------------------NCGHLTELETLILQMNQLKELSKIAEMTTQMKSLQQLDISQNSVSYDEKKGDCS 396 (520)
T ss_dssp TT------------------------TCCCCSSCCEEECCSSCCCBHHHHHHHHTTCTTCCEEECCSSCCBCCGGGCSCC
T ss_pred hh------------------------hhccCCCCCEEEccCCccCccccchHHHhhCCCCCEEECCCCcCCcccccchhc
Confidence 21 14556667777777777664 345667778888888888888876333 3477
Q ss_pred CCCCCCEEEccCCcCccCCCcccccccccccccCCCCCCcchhhhhhcccccccccccccceEEEeeccceeeecccccc
Q 005038 458 ELNQLQLLDLSNNNLHGPIPPCFDNTTLHESYSNSSSPDEQFEIFFSIEGHQGFLEKQNHEIFEFTTKNIAYIYQGKVLS 537 (717)
Q Consensus 458 ~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 537 (717)
.+++|+.|++++|++++..|..+. +
T Consensus 397 ~l~~L~~L~Ls~N~l~~~~~~~l~-------------------------------------------------------~ 421 (520)
T 2z7x_B 397 WTKSLLSLNMSSNILTDTIFRCLP-------------------------------------------------------P 421 (520)
T ss_dssp CCTTCCEEECCSSCCCGGGGGSCC-------------------------------------------------------T
T ss_pred cCccCCEEECcCCCCCcchhhhhc-------------------------------------------------------c
Confidence 788888888888888755443321 2
Q ss_pred ccceeeCCCCccCCCCcccccCCccCCeEeCCCcccCCCCCcCCCCCCCCCEEECCCCcCCccCc
Q 005038 538 LLSGLDLSCNKLIGHIPPQIGNLTRIQTLNLSHNNLTGSIPSTFSNLKHVESLDLSNNKLNGKIP 602 (717)
Q Consensus 538 ~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~N~i~~~~p 602 (717)
.|+.|++++|+++ .+|..+..+++|++|++++|+++++.+..|..+++|++|++++|++.+..+
T Consensus 422 ~L~~L~Ls~N~l~-~ip~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~l~~N~~~c~c~ 485 (520)
T 2z7x_B 422 RIKVLDLHSNKIK-SIPKQVVKLEALQELNVASNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP 485 (520)
T ss_dssp TCCEEECCSSCCC-CCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCBCCCHH
T ss_pred cCCEEECCCCccc-ccchhhhcCCCCCEEECCCCcCCccCHHHhccCCcccEEECcCCCCcccCC
Confidence 6899999999998 677777799999999999999995444459999999999999999987654
No 22
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=100.00 E-value=1.7e-43 Score=400.05 Aligned_cols=395 Identities=19% Similarity=0.228 Sum_probs=215.7
Q ss_pred CchhhcCCCCCCEEEccCCCCccc-CChhhhhCCCCCCEEEccCCcCcccCccCcC--CCCCcCEEEccCCcCCccCCcc
Q 005038 137 FPKFLYHQHDLEYVDLSHIKMNGE-FPNWLLENNTKLETLFLVNDSLAGPFRLPIH--SHKRLRQLDVSNNNIRGHIPVK 213 (717)
Q Consensus 137 ~~~~l~~~~~L~~L~l~~~~~~~~-~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~--~~~~L~~L~ls~n~i~~~~~~~ 213 (717)
+|..++.+++|++|++++|.+++. ++... . ..+.+...+.+|..++ .+++|++|++++|.+.+.+|..
T Consensus 440 IP~~l~~L~~L~~L~Ls~N~Lsg~~i~~~~---~------~~s~n~~~g~iP~~l~f~~L~~L~~L~Ls~N~l~~~iP~~ 510 (876)
T 4ecn_A 440 ISKAIQRLTKLQIIYFANSPFTYDNIAVDW---E------DANSDYAKQYENEELSWSNLKDLTDVELYNCPNMTQLPDF 510 (876)
T ss_dssp ECGGGGGCTTCCEEEEESCCCCGGGBSSSC---S------CTTSHHHHHHTTSCCCGGGCTTCCEEEEESCTTCCSCCGG
T ss_pred hhHHHhcCCCCCEEECcCCcCCCCcccccc---c------ccccccccccCChhhhhccCCCCCEEECcCCCCCccChHH
Confidence 566666666666666666666651 00000 0 0000111112444443 4555555555555544444433
Q ss_pred ccccCCCCcEEECCCCC-CCc-cCCcccc-------CCCCCCEEEccCCccccccch-hhhhCCCCCCEEEccCcccCcc
Q 005038 214 IGDVLPSLYVFNNSMNA-LDG-SIPSSFG-------NMKFLQILDLSNNHLTGEIPE-HLAVGCVNLQFLALSNNNLQGH 283 (717)
Q Consensus 214 ~~~~l~~L~~L~l~~n~-~~~-~~~~~l~-------~l~~L~~L~Ls~n~l~~~~~~-~~~~~~~~L~~L~L~~n~i~~~ 283 (717)
+.. +++|++|++++|+ +++ .+|..+. .+++|++|++++|.++ .+|. ..+..+++|++|++++|.++ .
T Consensus 511 l~~-L~~L~~L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L~-~ip~~~~l~~L~~L~~L~Ls~N~l~-~ 587 (876)
T 4ecn_A 511 LYD-LPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLE-EFPASASLQKMVKLGLLDCVHNKVR-H 587 (876)
T ss_dssp GGG-CSSCCEEECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSCCC-BCCCHHHHTTCTTCCEEECTTSCCC-B
T ss_pred HhC-CCCCCEEECcCCCCcccccchHHHHhhhhcccccCCccEEEeeCCcCC-ccCChhhhhcCCCCCEEECCCCCcc-c
Confidence 332 4455555555554 444 3443333 2336666666666665 5555 12234666666666666665 3
Q ss_pred CcccccCCCCCCeEECcCCcCcccCcccccCCCC-CCEEEccCCcCcCcCCcccCCCCC--CCEEEccCCcccCCccccc
Q 005038 284 LFSRNFNLTNLQWLQLEGNRFVGEIPQSLSKCSS-LEGLYLNNNSLLGKIPRWLGNLTR--LQYIIMPNNHLEGPIPVEF 360 (717)
Q Consensus 284 ~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~-L~~L~L~~n~~~~~~~~~~~~l~~--L~~L~l~~n~~~~~~~~~~ 360 (717)
+| .+..+++|++|++++|.+. .+|..+..+++ |+.|++++|.+. .+|..+..++. |+.|++++|.+.+.+|...
T Consensus 588 lp-~~~~L~~L~~L~Ls~N~l~-~lp~~l~~l~~~L~~L~Ls~N~L~-~lp~~~~~~~~~~L~~L~Ls~N~l~g~ip~l~ 664 (876)
T 4ecn_A 588 LE-AFGTNVKLTDLKLDYNQIE-EIPEDFCAFTDQVEGLGFSHNKLK-YIPNIFNAKSVYVMGSVDFSYNKIGSEGRNIS 664 (876)
T ss_dssp CC-CCCTTSEESEEECCSSCCS-CCCTTSCEECTTCCEEECCSSCCC-SCCSCCCTTCSSCEEEEECCSSCTTTTSSSCS
T ss_pred ch-hhcCCCcceEEECcCCccc-cchHHHhhccccCCEEECcCCCCC-cCchhhhccccCCCCEEECcCCcCCCccccch
Confidence 44 5566666666666666666 55555666666 666666666665 45555544433 6666666666655433211
Q ss_pred ---C--CCCCCCEEEccCCcCcccCCCcc-ccccccEEeccCcccccccCccccC-------CCCcCCEEeCCCCcCCcc
Q 005038 361 ---C--QLDSLQILDISDNNISGSLPSCF-HPLSIKQVHLSKNMLHGQLKRGTFF-------NCSSLVTLDLSYNRLNGS 427 (717)
Q Consensus 361 ---~--~l~~L~~L~l~~n~~~~~~~~~~-~~~~L~~L~l~~n~~~~~~~~~~~~-------~~~~L~~L~L~~n~~~~~ 427 (717)
. .+++|+.|++++|.+.......+ .+++|+.|++++|.+. .++...+. ++++|++|+|++|+++ .
T Consensus 665 ~~l~~~~~~~L~~L~Ls~N~L~~lp~~~~~~l~~L~~L~Ls~N~L~-~ip~~~~~~~~~~l~nl~~L~~L~Ls~N~L~-~ 742 (876)
T 4ecn_A 665 CSMDDYKGINASTVTLSYNEIQKFPTELFATGSPISTIILSNNLMT-SIPENSLKPKDGNYKNTYLLTTIDLRFNKLT-S 742 (876)
T ss_dssp SCTTTCCCCCEEEEECCSSCCCSCCHHHHHTTCCCSEEECCSCCCS-CCCTTSSSCTTSCCTTGGGCCEEECCSSCCC-C
T ss_pred hhhccccCCCcCEEEccCCcCCccCHHHHccCCCCCEEECCCCcCC-ccChHHhccccccccccCCccEEECCCCCCc-c
Confidence 1 22355555665555542111111 1222333333333222 22222121 2225555555555555 3
Q ss_pred cchhhh--CCCCCcEEEcCCCccccccchhccCCCCCCEEEccCCcCccCCCcccccccccccccCCCCCCcchhhhhhc
Q 005038 428 IPDWVD--GLSQLSHLILGHNNLEGEVSVQLCELNQLQLLDLSNNNLHGPIPPCFDNTTLHESYSNSSSPDEQFEIFFSI 505 (717)
Q Consensus 428 ~~~~~~--~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 505 (717)
+|..+. .+++|+.|+|++|++++ +|..+..+++|+.|++++|+
T Consensus 743 lp~~l~~~~l~~L~~L~Ls~N~L~~-lp~~l~~L~~L~~L~Ls~N~---------------------------------- 787 (876)
T 4ecn_A 743 LSDDFRATTLPYLSNMDVSYNCFSS-FPTQPLNSSQLKAFGIRHQR---------------------------------- 787 (876)
T ss_dssp CCGGGSTTTCTTCCEEECCSSCCSS-CCCGGGGCTTCCEEECCCCB----------------------------------
T ss_pred chHHhhhccCCCcCEEEeCCCCCCc-cchhhhcCCCCCEEECCCCC----------------------------------
Confidence 444443 45555555555555554 34444455555555555442
Q ss_pred ccccccccccccceEEEeeccceeeeccccccccceeeCCCCccCCCCcccccCCccCCeEeCCCcccCCCCCcCCCCCC
Q 005038 506 EGHQGFLEKQNHEIFEFTTKNIAYIYQGKVLSLLSGLDLSCNKLIGHIPPQIGNLTRIQTLNLSHNNLTGSIPSTFSNLK 585 (717)
Q Consensus 506 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~ 585 (717)
++++|++.+.+|..+..+++|++|+|++|++. .+|..+. +
T Consensus 788 -------------------------------------~ls~N~l~~~ip~~l~~L~~L~~L~Ls~N~L~-~Ip~~l~--~ 827 (876)
T 4ecn_A 788 -------------------------------------DAEGNRILRQWPTGITTCPSLIQLQIGSNDIR-KVDEKLT--P 827 (876)
T ss_dssp -------------------------------------CTTCCBCCCCCCTTGGGCSSCCEEECCSSCCC-BCCSCCC--S
T ss_pred -------------------------------------CcccccccccChHHHhcCCCCCEEECCCCCCC-ccCHhhc--C
Confidence 22457888889999999999999999999994 7887765 6
Q ss_pred CCCEEECCCCcCCccCchhhcCCCCCCEEeccCCcCee
Q 005038 586 HVESLDLSNNKLNGKIPHQLVELKTLEVFSVAYNNLSG 623 (717)
Q Consensus 586 ~L~~L~L~~N~i~~~~p~~~~~l~~L~~L~l~~N~l~~ 623 (717)
+|+.|+|++|++....+..+.....+..+.+.+|++..
T Consensus 828 ~L~~LdLs~N~l~~i~~~~~~~~~~~~~~~L~~n~~~~ 865 (876)
T 4ecn_A 828 QLYILDIADNPNISIDVTSVCPYIEAGMYVLLYDKTQD 865 (876)
T ss_dssp SSCEEECCSCTTCEEECGGGHHHHHTTCCEEECCTTSE
T ss_pred CCCEEECCCCCCCccChHHccccccchheeecCCCccc
Confidence 99999999999987777777666667777788777653
No 23
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=100.00 E-value=1.3e-41 Score=375.82 Aligned_cols=464 Identities=19% Similarity=0.174 Sum_probs=293.3
Q ss_pred cCCCCCCeeeCCCCCCCCCcchhccCCCCCCEEeCCCCCCcccCCccccCCCCCCCEEECCCCcccCcCCcccccCCCCC
Q 005038 16 CSLVHLQELYIASNDLRGSLPWCMANMTSLRILDVSSNQLTGSISSSPLVHLTSIEELMLSNNYFQIPISLEPLFNYSRL 95 (717)
Q Consensus 16 ~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~i~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L 95 (717)
..+...+++|+++|++++ +|..+. ++|++|++++|.++ .++..+|.++++|++|++++|.+++ +....|.++++|
T Consensus 28 ~~~~~~~~l~ls~~~L~~-ip~~~~--~~L~~L~Ls~N~i~-~~~~~~~~~l~~L~~L~Ls~N~l~~-~~~~~~~~l~~L 102 (562)
T 3a79_B 28 FSNELESMVDYSNRNLTH-VPKDLP--PRTKALSLSQNSIS-ELRMPDISFLSELRVLRLSHNRIRS-LDFHVFLFNQDL 102 (562)
T ss_dssp -----CCEEECTTSCCCS-CCTTSC--TTCCEEECCSSCCC-CCCGGGTTTCTTCCEEECCSCCCCE-ECTTTTTTCTTC
T ss_pred cccCCCcEEEcCCCCCcc-CCCCCC--CCcCEEECCCCCcc-ccChhhhccCCCccEEECCCCCCCc-CCHHHhCCCCCC
Confidence 344555888999888884 565554 78889999999888 5665578888889999998888874 333567888888
Q ss_pred CEEEccCCcccccccccccccCCCccccEEEccCCCCCCCCCchhhcCCCCCCEEEccCCCCcc-cCChhhhhCCCCCCE
Q 005038 96 KIFNAENNEIKAEITESHSLIAPKFQLNTLSLSSNYGDGFIFPKFLYHQHDLEYVDLSHIKMNG-EFPNWLLENNTKLET 174 (717)
Q Consensus 96 ~~L~l~~n~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~-~~~~~~~~~~~~L~~ 174 (717)
++|++++|.++.. |.. .+++|++|++++|.+.+ .+|.. +.++++|++
T Consensus 103 ~~L~Ls~N~l~~l-----------------------------p~~--~l~~L~~L~Ls~N~l~~l~~p~~-~~~l~~L~~ 150 (562)
T 3a79_B 103 EYLDVSHNRLQNI-----------------------------SCC--PMASLRHLDLSFNDFDVLPVCKE-FGNLTKLTF 150 (562)
T ss_dssp CEEECTTSCCCEE-----------------------------CSC--CCTTCSEEECCSSCCSBCCCCGG-GGGCTTCCE
T ss_pred CEEECCCCcCCcc-----------------------------Ccc--ccccCCEEECCCCCccccCchHh-hcccCcccE
Confidence 8888888876521 111 45678888888888774 23344 477888888
Q ss_pred EEccCCcCcccCccCcCCCCCc--CEEEccCCcC--CccCCccccccCCCCcEEECCCCCCCccCCc-cccCCCCCCEEE
Q 005038 175 LFLVNDSLAGPFRLPIHSHKRL--RQLDVSNNNI--RGHIPVKIGDVLPSLYVFNNSMNALDGSIPS-SFGNMKFLQILD 249 (717)
Q Consensus 175 L~l~~n~~~~~~~~~~~~~~~L--~~L~ls~n~i--~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~-~l~~l~~L~~L~ 249 (717)
|++++|.+.+. .+..+++| ++|++++|.+ ++..|..+...-...-.++++.|.+.+.++. .+..+++|+.++
T Consensus 151 L~L~~n~l~~~---~~~~l~~L~L~~L~L~~n~l~~~~~~~~~l~~l~~~~l~l~l~~n~~~~~~~~~~~~~l~~L~~L~ 227 (562)
T 3a79_B 151 LGLSAAKFRQL---DLLPVAHLHLSCILLDLVSYHIKGGETESLQIPNTTVLHLVFHPNSLFSVQVNMSVNALGHLQLSN 227 (562)
T ss_dssp EEEECSBCCTT---TTGGGTTSCEEEEEEEESSCCCCSSSCCEEEECCEEEEEEEECSSSCCCCCCEEEESSEEEEEEEE
T ss_pred EecCCCccccC---chhhhhhceeeEEEeecccccccccCcccccccCcceEEEEecCccchhhhhhhcccccceEEEec
Confidence 88888887753 33334444 8888888877 5555544433111111335555555443332 234455555555
Q ss_pred ccCCcccc----ccchhhhhCCCCCCEEEccCcccCccCcccccCCCCCCeEECcCCcCcccCcccccCCCCCCEEEccC
Q 005038 250 LSNNHLTG----EIPEHLAVGCVNLQFLALSNNNLQGHLFSRNFNLTNLQWLQLEGNRFVGEIPQSLSKCSSLEGLYLNN 325 (717)
Q Consensus 250 Ls~n~l~~----~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~ 325 (717)
+++|.... ..... +.++++|+.++++++.+.+. .+.+. +..+ ..++|++|++++
T Consensus 228 l~~n~~~~~~l~~~~~~-l~~l~~L~~L~L~~~~l~~~-------------------~~~~~-~~~~-~~~~L~~L~l~~ 285 (562)
T 3a79_B 228 IKLNDENCQRLMTFLSE-LTRGPTLLNVTLQHIETTWK-------------------CSVKL-FQFF-WPRPVEYLNIYN 285 (562)
T ss_dssp EECCSTTHHHHHHHHHH-HHSCSSCEEEEEEEEEECHH-------------------HHHHH-HHHH-TTSSEEEEEEEE
T ss_pred ccccccccchHHHHHHH-HhccCcceEEEecCCcCcHH-------------------HHHHH-HHhh-hcccccEEEEec
Confidence 55553100 00111 12344444444443333211 01100 1111 123555555555
Q ss_pred CcCcCcCCccc-----CCCCCCCEEEccCCcccCCcc-cccC---CCCCCCEEEccCCcCcccCCCccccccccEEeccC
Q 005038 326 NSLLGKIPRWL-----GNLTRLQYIIMPNNHLEGPIP-VEFC---QLDSLQILDISDNNISGSLPSCFHPLSIKQVHLSK 396 (717)
Q Consensus 326 n~~~~~~~~~~-----~~l~~L~~L~l~~n~~~~~~~-~~~~---~l~~L~~L~l~~n~~~~~~~~~~~~~~L~~L~l~~ 396 (717)
|.+.+.+|..+ ..++.|+.+++..+.+ .+| ..+. ...+|++|++++|.+.
T Consensus 286 n~l~~~ip~~~~~~~~~~L~~L~~~~~~~~~~--~~p~~~~~~~~~~~~L~~L~l~~n~~~------------------- 344 (562)
T 3a79_B 286 LTITERIDREEFTYSETALKSLMIEHVKNQVF--LFSKEALYSVFAEMNIKMLSISDTPFI------------------- 344 (562)
T ss_dssp EEECSCCCCCCCCCCSCSCCEEEEEEEEECCC--SSCHHHHHHHHHTCCCSEEEEESSCCC-------------------
T ss_pred cEeeccccchhhhcccccchheehhhccccee--ecChhhhhhhhccCcceEEEccCCCcc-------------------
Confidence 55554444443 3333333333333333 111 1111 1134555555555443
Q ss_pred cccccccCccccCCCCcCCEEeCCCCcCCcccchhhhCCCCCcEEEcCCCcccccc--chhccCCCCCCEEEccCCcCcc
Q 005038 397 NMLHGQLKRGTFFNCSSLVTLDLSYNRLNGSIPDWVDGLSQLSHLILGHNNLEGEV--SVQLCELNQLQLLDLSNNNLHG 474 (717)
Q Consensus 397 n~~~~~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~--~~~l~~l~~L~~L~L~~n~l~~ 474 (717)
... ....+++|++|++++|.+++..|..+.++++|++|++++|++++.. +..+..+++|+.|++++|++++
T Consensus 345 ----~~~---~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~l~~N~l~~ 417 (562)
T 3a79_B 345 ----HMV---CPPSPSSFTFLNFTQNVFTDSVFQGCSTLKRLQTLILQRNGLKNFFKVALMTKNMSSLETLDVSLNSLNS 417 (562)
T ss_dssp ----CCC---CCSSCCCCCEEECCSSCCCTTTTTTCCSCSSCCEEECCSSCCCBTTHHHHTTTTCTTCCEEECTTSCCBS
T ss_pred ----ccc---CccCCCCceEEECCCCccccchhhhhcccCCCCEEECCCCCcCCcccchhhhcCCCCCCEEECCCCcCCC
Confidence 111 1256788899999999888878888888899999999999888643 4568888999999999999887
Q ss_pred CCCc-ccccccccccccCCCCCCcchhhhhhcccccccccccccceEEEeeccceeeeccccccccceeeCCCCccCCCC
Q 005038 475 PIPP-CFDNTTLHESYSNSSSPDEQFEIFFSIEGHQGFLEKQNHEIFEFTTKNIAYIYQGKVLSLLSGLDLSCNKLIGHI 553 (717)
Q Consensus 475 ~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~ 553 (717)
.+|. .+.. ++.|+.|++++|++++..
T Consensus 418 ~~~~~~~~~-----------------------------------------------------l~~L~~L~l~~n~l~~~~ 444 (562)
T 3a79_B 418 HAYDRTCAW-----------------------------------------------------AESILVLNLSSNMLTGSV 444 (562)
T ss_dssp CCSSCCCCC-----------------------------------------------------CTTCCEEECCSSCCCGGG
T ss_pred ccChhhhcC-----------------------------------------------------cccCCEEECCCCCCCcch
Confidence 4443 2332 337899999999988766
Q ss_pred cccccCCccCCeEeCCCcccCCCCCcCCCCCCCCCEEECCCCcCCccCchh-hcCCCCCCEEeccCCcCeecCC
Q 005038 554 PPQIGNLTRIQTLNLSHNNLTGSIPSTFSNLKHVESLDLSNNKLNGKIPHQ-LVELKTLEVFSVAYNNLSGEIP 626 (717)
Q Consensus 554 ~~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~N~i~~~~p~~-~~~l~~L~~L~l~~N~l~~~~p 626 (717)
|..+. ++|++|+|++|+++ .+|..+..+++|++|+|++|+++ .+|.. +..+++|+.|++++|++.|.+|
T Consensus 445 ~~~l~--~~L~~L~L~~N~l~-~ip~~~~~l~~L~~L~L~~N~l~-~l~~~~~~~l~~L~~L~l~~N~~~c~c~ 514 (562)
T 3a79_B 445 FRCLP--PKVKVLDLHNNRIM-SIPKDVTHLQALQELNVASNQLK-SVPDGVFDRLTSLQYIWLHDNPWDCTCP 514 (562)
T ss_dssp GSSCC--TTCSEEECCSSCCC-CCCTTTTSSCCCSEEECCSSCCC-CCCTTSTTTCTTCCCEECCSCCBCCCHH
T ss_pred hhhhc--CcCCEEECCCCcCc-ccChhhcCCCCCCEEECCCCCCC-CCCHHHHhcCCCCCEEEecCCCcCCCcc
Confidence 65554 79999999999999 67777779999999999999999 45554 8999999999999999998776
No 24
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=100.00 E-value=4.8e-40 Score=363.30 Aligned_cols=454 Identities=19% Similarity=0.188 Sum_probs=311.1
Q ss_pred CCCCCcceeeCcccccCCCCCCeeeCCCCCCCCCcchhccCCCCCCEEeCCCCCCcccCCccccCCCCCCCEEECCCCcc
Q 005038 1 MSSCEVNGVVRSQGLCSLVHLQELYIASNDLRGSLPWCMANMTSLRILDVSSNQLTGSISSSPLVHLTSIEELMLSNNYF 80 (717)
Q Consensus 1 l~~~~~~g~i~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~i~~~~~~~l~~L~~L~L~~n~~ 80 (717)
+++|+++ .||. .+. ++|++|++++|.+++..|.+|.++++|++|+|++|+++ .++..+|.++++|++|++++|.+
T Consensus 38 ls~~~L~-~ip~-~~~--~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~-~~~~~~~~~l~~L~~L~Ls~N~l 112 (562)
T 3a79_B 38 YSNRNLT-HVPK-DLP--PRTKALSLSQNSISELRMPDISFLSELRVLRLSHNRIR-SLDFHVFLFNQDLEYLDVSHNRL 112 (562)
T ss_dssp CTTSCCC-SCCT-TSC--TTCCEEECCSSCCCCCCGGGTTTCTTCCEEECCSCCCC-EECTTTTTTCTTCCEEECTTSCC
T ss_pred cCCCCCc-cCCC-CCC--CCcCEEECCCCCccccChhhhccCCCccEEECCCCCCC-cCCHHHhCCCCCCCEEECCCCcC
Confidence 5788888 5885 343 89999999999999888899999999999999999999 55444899999999999999999
Q ss_pred cCcCCcccccCCCCCCEEEccCCcccccccccccccCCCccccEEEccCCCCCCCCCchhhcCCCCCCEEEccCCCCccc
Q 005038 81 QIPISLEPLFNYSRLKIFNAENNEIKAEITESHSLIAPKFQLNTLSLSSNYGDGFIFPKFLYHQHDLEYVDLSHIKMNGE 160 (717)
Q Consensus 81 ~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~ 160 (717)
+ .++.. .+++|++|++++|.+... ..|..++.+++|++|++++|.+.+.
T Consensus 113 ~-~lp~~---~l~~L~~L~Ls~N~l~~l---------------------------~~p~~~~~l~~L~~L~L~~n~l~~~ 161 (562)
T 3a79_B 113 Q-NISCC---PMASLRHLDLSFNDFDVL---------------------------PVCKEFGNLTKLTFLGLSAAKFRQL 161 (562)
T ss_dssp C-EECSC---CCTTCSEEECCSSCCSBC---------------------------CCCGGGGGCTTCCEEEEECSBCCTT
T ss_pred C-ccCcc---ccccCCEEECCCCCcccc---------------------------CchHhhcccCcccEEecCCCccccC
Confidence 8 45533 789999999999877531 2345677788888888888887642
Q ss_pred CChhhhhCCCCC--CEEEccCCcC--cccCccCcCCCC-CcCEEEccCCcCCccCCccccccCCCCcEEECCCCCCC---
Q 005038 161 FPNWLLENNTKL--ETLFLVNDSL--AGPFRLPIHSHK-RLRQLDVSNNNIRGHIPVKIGDVLPSLYVFNNSMNALD--- 232 (717)
Q Consensus 161 ~~~~~~~~~~~L--~~L~l~~n~~--~~~~~~~~~~~~-~L~~L~ls~n~i~~~~~~~~~~~l~~L~~L~l~~n~~~--- 232 (717)
. +..+++| +.|++++|.+ .+..+..+..+. ..-++++++|.+.+.++......+++|+.+++++|...
T Consensus 162 ~----~~~l~~L~L~~L~L~~n~l~~~~~~~~~l~~l~~~~l~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~ 237 (562)
T 3a79_B 162 D----LLPVAHLHLSCILLDLVSYHIKGGETESLQIPNTTVLHLVFHPNSLFSVQVNMSVNALGHLQLSNIKLNDENCQR 237 (562)
T ss_dssp T----TGGGTTSCEEEEEEEESSCCCCSSSCCEEEECCEEEEEEEECSSSCCCCCCEEEESSEEEEEEEEEECCSTTHHH
T ss_pred c----hhhhhhceeeEEEeecccccccccCcccccccCcceEEEEecCccchhhhhhhcccccceEEEecccccccccch
Confidence 2 2344555 8999998888 666666666544 12256888898887788777777889999999988521
Q ss_pred -ccCCccccCCCCCCEEEccCCccccccchhhh--hCCCCCCEEEccCcccCccCcccc-----cCCCCCCeEECcCCcC
Q 005038 233 -GSIPSSFGNMKFLQILDLSNNHLTGEIPEHLA--VGCVNLQFLALSNNNLQGHLFSRN-----FNLTNLQWLQLEGNRF 304 (717)
Q Consensus 233 -~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~--~~~~~L~~L~L~~n~i~~~~~~~~-----~~l~~L~~L~L~~n~l 304 (717)
......+..+++|+.++++++.+.+.....+. ...++|++|++++|.+.+.+|..+ ..++.|+.++++.+.+
T Consensus 238 l~~~~~~l~~l~~L~~L~L~~~~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~ip~~~~~~~~~~L~~L~~~~~~~~~~ 317 (562)
T 3a79_B 238 LMTFLSELTRGPTLLNVTLQHIETTWKCSVKLFQFFWPRPVEYLNIYNLTITERIDREEFTYSETALKSLMIEHVKNQVF 317 (562)
T ss_dssp HHHHHHHHHSCSSCEEEEEEEEEECHHHHHHHHHHHTTSSEEEEEEEEEEECSCCCCCCCCCCSCSCCEEEEEEEEECCC
T ss_pred HHHHHHHHhccCcceEEEecCCcCcHHHHHHHHHhhhcccccEEEEeccEeeccccchhhhcccccchheehhhccccee
Confidence 11233577889999999988877643222111 124578888888888776666655 3334444444444433
Q ss_pred cccCc-cccc---CCCCCCEEEccCCcCcCcCCcccCCCCCCCEEEccCCcccCCcccccCCCCCCCEEEccCCcCcccC
Q 005038 305 VGEIP-QSLS---KCSSLEGLYLNNNSLLGKIPRWLGNLTRLQYIIMPNNHLEGPIPVEFCQLDSLQILDISDNNISGSL 380 (717)
Q Consensus 305 ~~~~~-~~~~---~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~ 380 (717)
.+| ..+. ...+|++|++++|.+. ... ....+++|++|++++|.+.+..
T Consensus 318 --~~p~~~~~~~~~~~~L~~L~l~~n~~~------------------------~~~--~~~~l~~L~~L~l~~n~l~~~~ 369 (562)
T 3a79_B 318 --LFSKEALYSVFAEMNIKMLSISDTPFI------------------------HMV--CPPSPSSFTFLNFTQNVFTDSV 369 (562)
T ss_dssp --SSCHHHHHHHHHTCCCSEEEEESSCCC------------------------CCC--CCSSCCCCCEEECCSSCCCTTT
T ss_pred --ecChhhhhhhhccCcceEEEccCCCcc------------------------ccc--CccCCCCceEEECCCCccccch
Confidence 122 1111 1134555555555443 111 0134455555555555554322
Q ss_pred CCccccccccEEeccCcccccccCccccCCCCcCCEEeCCCCcCCcc--cchhhhCCCCCcEEEcCCCcccc-ccchhcc
Q 005038 381 PSCFHPLSIKQVHLSKNMLHGQLKRGTFFNCSSLVTLDLSYNRLNGS--IPDWVDGLSQLSHLILGHNNLEG-EVSVQLC 457 (717)
Q Consensus 381 ~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~L~~n~~~~~--~~~~~~~l~~L~~L~L~~n~l~~-~~~~~l~ 457 (717)
+. .+..+++|++|++++|++++. .|..+.++++|++|++++|++++ ..+..+.
T Consensus 370 ~~------------------------~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~ 425 (562)
T 3a79_B 370 FQ------------------------GCSTLKRLQTLILQRNGLKNFFKVALMTKNMSSLETLDVSLNSLNSHAYDRTCA 425 (562)
T ss_dssp TT------------------------TCCSCSSCCEEECCSSCCCBTTHHHHTTTTCTTCCEEECTTSCCBSCCSSCCCC
T ss_pred hh------------------------hhcccCCCCEEECCCCCcCCcccchhhhcCCCCCCEEECCCCcCCCccChhhhc
Confidence 11 144555666666666666542 23456667777777777777776 3334466
Q ss_pred CCCCCCEEEccCCcCccCCCcccccccccccccCCCCCCcchhhhhhcccccccccccccceEEEeeccceeeecccccc
Q 005038 458 ELNQLQLLDLSNNNLHGPIPPCFDNTTLHESYSNSSSPDEQFEIFFSIEGHQGFLEKQNHEIFEFTTKNIAYIYQGKVLS 537 (717)
Q Consensus 458 ~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 537 (717)
.+++|+.|++++|++++..|..+. +
T Consensus 426 ~l~~L~~L~l~~n~l~~~~~~~l~-------------------------------------------------------~ 450 (562)
T 3a79_B 426 WAESILVLNLSSNMLTGSVFRCLP-------------------------------------------------------P 450 (562)
T ss_dssp CCTTCCEEECCSSCCCGGGGSSCC-------------------------------------------------------T
T ss_pred CcccCCEEECCCCCCCcchhhhhc-------------------------------------------------------C
Confidence 777788888888877654443221 2
Q ss_pred ccceeeCCCCccCCCCcccccCCccCCeEeCCCcccCCCCCcCCCCCCCCCEEECCCCcCCccCc
Q 005038 538 LLSGLDLSCNKLIGHIPPQIGNLTRIQTLNLSHNNLTGSIPSTFSNLKHVESLDLSNNKLNGKIP 602 (717)
Q Consensus 538 ~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~N~i~~~~p 602 (717)
.|+.|++++|+++ .+|..+..+++|++|+|++|+++++.+..|..+++|++|++++|++.+..+
T Consensus 451 ~L~~L~L~~N~l~-~ip~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~l~~N~~~c~c~ 514 (562)
T 3a79_B 451 KVKVLDLHNNRIM-SIPKDVTHLQALQELNVASNQLKSVPDGVFDRLTSLQYIWLHDNPWDCTCP 514 (562)
T ss_dssp TCSEEECCSSCCC-CCCTTTTSSCCCSEEECCSSCCCCCCTTSTTTCTTCCCEECCSCCBCCCHH
T ss_pred cCCEEECCCCcCc-ccChhhcCCCCCCEEECCCCCCCCCCHHHHhcCCCCCEEEecCCCcCCCcc
Confidence 6888999999888 567666799999999999999995444449999999999999999987665
No 25
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=100.00 E-value=7e-40 Score=353.11 Aligned_cols=373 Identities=20% Similarity=0.205 Sum_probs=276.4
Q ss_pred CEEEccCCcCCccCCccccccCCCCcEEECCCCCCCccCCccccCCCCCCEEEccCCccccccchhhhhCCCCCCEEEcc
Q 005038 197 RQLDVSNNNIRGHIPVKIGDVLPSLYVFNNSMNALDGSIPSSFGNMKFLQILDLSNNHLTGEIPEHLAVGCVNLQFLALS 276 (717)
Q Consensus 197 ~~L~ls~n~i~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~L~~L~L~ 276 (717)
+.++.+++.++ .+|. + .+++++|++++|.+.+..|..+.++++|++|++++|.+.+.++...+.++++|++|+++
T Consensus 13 ~~~~c~~~~l~-~lp~-l---~~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~Ls 87 (455)
T 3v47_A 13 YNAICINRGLH-QVPE-L---PAHVNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLD 87 (455)
T ss_dssp TEEECCSSCCS-SCCC-C---CTTCCEEECCSSCCCEECTTTTSSCTTCCEEECCCCSTTCEECTTTTTTCTTCCEEECT
T ss_pred cccCcCCCCcc-cCCC-C---CCccCEEEecCCccCcCChhHhccCccccEEECcCCcccceECcccccccccCCEEeCC
Confidence 35566666665 5554 2 25677777777777766677777777888888887777656666656667778888888
Q ss_pred CcccCccCcccccCCCCCCeEECcCCcCcccCccc--ccCCCCCCEEEccCCcCcCcCCcc-cCCCCCCCEEEccCCccc
Q 005038 277 NNNLQGHLFSRNFNLTNLQWLQLEGNRFVGEIPQS--LSKCSSLEGLYLNNNSLLGKIPRW-LGNLTRLQYIIMPNNHLE 353 (717)
Q Consensus 277 ~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~--~~~l~~L~~L~L~~n~~~~~~~~~-~~~l~~L~~L~l~~n~~~ 353 (717)
+|.+.+..+..+.++++|++|++++|.+.+..+.. +..+++|++|++++|.+.+..|.. +..+++|+.|++++|.+.
T Consensus 88 ~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~ 167 (455)
T 3v47_A 88 YNQFLQLETGAFNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFNKVK 167 (455)
T ss_dssp TCTTCEECTTTTTTCTTCCEEECTTSCCBTHHHHSSTTTTCTTCCEEECCSSBCCSCCCCGGGGGCTTCCEEECTTCCBS
T ss_pred CCccCccChhhccCcccCCEEeCCCCCCCccccCcccccCcccCCEEECCCCccCccCcccccCCCCcccEEeCCCCccc
Confidence 88777777777777788888888888777544433 777778888888888777665654 677778888888888777
Q ss_pred CCcccccCCC--CCCCEEEccCCcCcccCCCcc---------ccccccEEeccCcccccccCcccc--CCCCcCCEEeCC
Q 005038 354 GPIPVEFCQL--DSLQILDISDNNISGSLPSCF---------HPLSIKQVHLSKNMLHGQLKRGTF--FNCSSLVTLDLS 420 (717)
Q Consensus 354 ~~~~~~~~~l--~~L~~L~l~~n~~~~~~~~~~---------~~~~L~~L~l~~n~~~~~~~~~~~--~~~~~L~~L~L~ 420 (717)
+..+..+..+ .+|+.+++++|.+.+..+..+ ..++|+.|++++|.+.+..+.... ...++|+.|+++
T Consensus 168 ~~~~~~l~~l~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~L~~L~l~ 247 (455)
T 3v47_A 168 SICEEDLLNFQGKHFTLLRLSSITLQDMNEYWLGWEKCGNPFKNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILS 247 (455)
T ss_dssp CCCTTTSGGGTTCEEEEEECTTCBCTTCSTTCTTHHHHCCTTTTCEEEEEECTTSCCCHHHHHHHHHHTTTCCEEEEECT
T ss_pred ccChhhhhccccccccccccccCcccccchhhccccccccccccceeeeEecCCCcccccchhhhhccccccceeeEeec
Confidence 7766666554 577777888777765444322 245677777777777654443311 123677788877
Q ss_pred CCcCCcc----------cchhhhC--CCCCcEEEcCCCccccccchhccCCCCCCEEEccCCcCccCCCccccccccccc
Q 005038 421 YNRLNGS----------IPDWVDG--LSQLSHLILGHNNLEGEVSVQLCELNQLQLLDLSNNNLHGPIPPCFDNTTLHES 488 (717)
Q Consensus 421 ~n~~~~~----------~~~~~~~--l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~ 488 (717)
+|...+. .+..+.+ .++|+.|++++|++++..+..+..+++|+.|++++|.+.+..|..|..++
T Consensus 248 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~---- 323 (455)
T 3v47_A 248 NSYNMGSSFGHTNFKDPDNFTFKGLEASGVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNEINKIDDNAFWGLT---- 323 (455)
T ss_dssp TCTTTSCCTTCCSSCCCCTTTTGGGTTSCCCEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCT----
T ss_pred cccccccccchhhhccCcccccccccccCceEEEecCccccccchhhcccCCCCCEEECCCCcccccChhHhcCcc----
Confidence 7754331 1122222 36899999999999888888888899999999999998877776665543
Q ss_pred ccCCCCCCcchhhhhhcccccccccccccceEEEeeccceeeeccccccccceeeCCCCccCCCCcccccCCccCCeEeC
Q 005038 489 YSNSSSPDEQFEIFFSIEGHQGFLEKQNHEIFEFTTKNIAYIYQGKVLSLLSGLDLSCNKLIGHIPPQIGNLTRIQTLNL 568 (717)
Q Consensus 489 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L 568 (717)
.|+.|++++|++.+..|..|..+++|++|+|
T Consensus 324 -------------------------------------------------~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L 354 (455)
T 3v47_A 324 -------------------------------------------------HLLKLNLSQNFLGSIDSRMFENLDKLEVLDL 354 (455)
T ss_dssp -------------------------------------------------TCCEEECCSSCCCEECGGGGTTCTTCCEEEC
T ss_pred -------------------------------------------------cCCEEECCCCccCCcChhHhcCcccCCEEEC
Confidence 7889999999998888888899999999999
Q ss_pred CCcccCCCCCcCCCCCCCCCEEECCCCcCCccCchhhcCCCCCCEEeccCCcCeecCCC
Q 005038 569 SHNNLTGSIPSTFSNLKHVESLDLSNNKLNGKIPHQLVELKTLEVFSVAYNNLSGEIPE 627 (717)
Q Consensus 569 s~n~l~~~~p~~~~~l~~L~~L~L~~N~i~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~ 627 (717)
++|++++..|..|.++++|++|++++|++++..+..+..+++|++|++++|++++.+|.
T Consensus 355 s~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~ 413 (455)
T 3v47_A 355 SYNHIRALGDQSFLGLPNLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPR 413 (455)
T ss_dssp CSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCTTT
T ss_pred CCCcccccChhhccccccccEEECCCCccccCCHhHhccCCcccEEEccCCCcccCCCc
Confidence 99999988888899999999999999999876667778899999999999999988884
No 26
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=100.00 E-value=5.1e-39 Score=346.33 Aligned_cols=382 Identities=20% Similarity=0.202 Sum_probs=293.0
Q ss_pred EEEccCCCCcccCChhhhhCCCCCCEEEccCCcCcccCccCcCCCCCcCEEEccCCcCCccCCccccccCCCCcEEECCC
Q 005038 149 YVDLSHIKMNGEFPNWLLENNTKLETLFLVNDSLAGPFRLPIHSHKRLRQLDVSNNNIRGHIPVKIGDVLPSLYVFNNSM 228 (717)
Q Consensus 149 ~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~ls~n~i~~~~~~~~~~~l~~L~~L~l~~ 228 (717)
.++.+++.++ .+|. + .++|++|++++|.+.+..+..+..+++|++|++++|.+.+.++...+..+++|++|++++
T Consensus 14 ~~~c~~~~l~-~lp~-l---~~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~Ls~ 88 (455)
T 3v47_A 14 NAICINRGLH-QVPE-L---PAHVNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDY 88 (455)
T ss_dssp EEECCSSCCS-SCCC-C---CTTCCEEECCSSCCCEECTTTTSSCTTCCEEECCCCSTTCEECTTTTTTCTTCCEEECTT
T ss_pred ccCcCCCCcc-cCCC-C---CCccCEEEecCCccCcCChhHhccCccccEEECcCCcccceECcccccccccCCEEeCCC
Confidence 4555555555 5554 2 366777888777777776777778888888888888777666666566677888888888
Q ss_pred CCCCccCCccccCCCCCCEEEccCCccccccchh-hhhCCCCCCEEEccCcccCccCccc-ccCCCCCCeEECcCCcCcc
Q 005038 229 NALDGSIPSSFGNMKFLQILDLSNNHLTGEIPEH-LAVGCVNLQFLALSNNNLQGHLFSR-NFNLTNLQWLQLEGNRFVG 306 (717)
Q Consensus 229 n~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~-~~~~~~~L~~L~L~~n~i~~~~~~~-~~~l~~L~~L~L~~n~l~~ 306 (717)
|.+.+..|..+.++++|++|++++|.+++.++.. .+..+++|++|++++|.+.+..+.. +.++++|++|++++|.+.+
T Consensus 89 n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~ 168 (455)
T 3v47_A 89 NQFLQLETGAFNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFNKVKS 168 (455)
T ss_dssp CTTCEECTTTTTTCTTCCEEECTTSCCBTHHHHSSTTTTCTTCCEEECCSSBCCSCCCCGGGGGCTTCCEEECTTCCBSC
T ss_pred CccCccChhhccCcccCCEEeCCCCCCCccccCcccccCcccCCEEECCCCccCccCcccccCCCCcccEEeCCCCcccc
Confidence 8887777888888888888888888887544432 3446788888888888888766665 6778888888888888887
Q ss_pred cCcccccCC--CCCCEEEccCCcCcCcCCcc--------cCCCCCCCEEEccCCcccCCcccccCC---CCCCCEEEccC
Q 005038 307 EIPQSLSKC--SSLEGLYLNNNSLLGKIPRW--------LGNLTRLQYIIMPNNHLEGPIPVEFCQ---LDSLQILDISD 373 (717)
Q Consensus 307 ~~~~~~~~l--~~L~~L~L~~n~~~~~~~~~--------~~~l~~L~~L~l~~n~~~~~~~~~~~~---l~~L~~L~l~~ 373 (717)
..+..+..+ .+|+.|++++|.+.+..+.. +..+++|+.|++++|.+.+..+..+.. .++|+.|++++
T Consensus 169 ~~~~~l~~l~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~L~~L~l~~ 248 (455)
T 3v47_A 169 ICEEDLLNFQGKHFTLLRLSSITLQDMNEYWLGWEKCGNPFKNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILSN 248 (455)
T ss_dssp CCTTTSGGGTTCEEEEEECTTCBCTTCSTTCTTHHHHCCTTTTCEEEEEECTTSCCCHHHHHHHHHHTTTCCEEEEECTT
T ss_pred cChhhhhccccccccccccccCcccccchhhccccccccccccceeeeEecCCCcccccchhhhhccccccceeeEeecc
Confidence 777666655 67888888888877544433 235577888888888887666665543 37788888888
Q ss_pred CcCcccCCCccccccccEEeccCcccccccCccccC--CCCcCCEEeCCCCcCCcccchhhhCCCCCcEEEcCCCccccc
Q 005038 374 NNISGSLPSCFHPLSIKQVHLSKNMLHGQLKRGTFF--NCSSLVTLDLSYNRLNGSIPDWVDGLSQLSHLILGHNNLEGE 451 (717)
Q Consensus 374 n~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~--~~~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~ 451 (717)
|...+....... +.. .....+. ..++|++|++++|.+.+..|..+..+++|++|++++|++++.
T Consensus 249 ~~~~~~~~~~~~-------------~~~-~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~ 314 (455)
T 3v47_A 249 SYNMGSSFGHTN-------------FKD-PDNFTFKGLEASGVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNEINKI 314 (455)
T ss_dssp CTTTSCCTTCCS-------------SCC-CCTTTTGGGTTSCCCEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEE
T ss_pred ccccccccchhh-------------hcc-CcccccccccccCceEEEecCccccccchhhcccCCCCCEEECCCCccccc
Confidence 766543221111 100 1111122 236899999999999998899999999999999999999998
Q ss_pred cchhccCCCCCCEEEccCCcCccCCCcccccccccccccCCCCCCcchhhhhhcccccccccccccceEEEeeccceeee
Q 005038 452 VSVQLCELNQLQLLDLSNNNLHGPIPPCFDNTTLHESYSNSSSPDEQFEIFFSIEGHQGFLEKQNHEIFEFTTKNIAYIY 531 (717)
Q Consensus 452 ~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 531 (717)
.+..+..+++|++|++++|.+++..|..+..++
T Consensus 315 ~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~----------------------------------------------- 347 (455)
T 3v47_A 315 DDNAFWGLTHLLKLNLSQNFLGSIDSRMFENLD----------------------------------------------- 347 (455)
T ss_dssp CTTTTTTCTTCCEEECCSSCCCEECGGGGTTCT-----------------------------------------------
T ss_pred ChhHhcCcccCCEEECCCCccCCcChhHhcCcc-----------------------------------------------
Confidence 899999999999999999999877776665543
Q ss_pred ccccccccceeeCCCCccCCCCcccccCCccCCeEeCCCcccCCCCCcCCCCCCCCCEEECCCCcCCccCc
Q 005038 532 QGKVLSLLSGLDLSCNKLIGHIPPQIGNLTRIQTLNLSHNNLTGSIPSTFSNLKHVESLDLSNNKLNGKIP 602 (717)
Q Consensus 532 ~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~N~i~~~~p 602 (717)
+|++|++++|++++..|..|..+++|++|+|++|++++..+..|..+++|++|++++|++++..|
T Consensus 348 ------~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~ 412 (455)
T 3v47_A 348 ------KLEVLDLSYNHIRALGDQSFLGLPNLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP 412 (455)
T ss_dssp ------TCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCTT
T ss_pred ------cCCEEECCCCcccccChhhccccccccEEECCCCccccCCHhHhccCCcccEEEccCCCcccCCC
Confidence 79999999999998889999999999999999999998777788999999999999999998776
No 27
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=100.00 E-value=4.4e-38 Score=335.25 Aligned_cols=302 Identities=31% Similarity=0.415 Sum_probs=153.5
Q ss_pred CCcCEEEccCCcCCccCCccccccCCCCcEEECCCCCCCccCCccccCCCCCCEEEccCCccccccchhhhhCCCCCCEE
Q 005038 194 KRLRQLDVSNNNIRGHIPVKIGDVLPSLYVFNNSMNALDGSIPSSFGNMKFLQILDLSNNHLTGEIPEHLAVGCVNLQFL 273 (717)
Q Consensus 194 ~~L~~L~ls~n~i~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~L~~L 273 (717)
++|++|++++|.++ .++.. .++|++|++++|.+.+ +| .++++++|++|++++|.++ .+|.. ..+|++|
T Consensus 111 ~~L~~L~l~~n~l~-~l~~~----~~~L~~L~L~~n~l~~-lp-~~~~l~~L~~L~l~~N~l~-~lp~~----~~~L~~L 178 (454)
T 1jl5_A 111 QSLKSLLVDNNNLK-ALSDL----PPLLEYLGVSNNQLEK-LP-ELQNSSFLKIIDVDNNSLK-KLPDL----PPSLEFI 178 (454)
T ss_dssp TTCCEEECCSSCCS-CCCSC----CTTCCEEECCSSCCSS-CC-CCTTCTTCCEEECCSSCCS-CCCCC----CTTCCEE
T ss_pred CCCcEEECCCCccC-cccCC----CCCCCEEECcCCCCCC-Cc-ccCCCCCCCEEECCCCcCc-ccCCC----cccccEE
Confidence 45555555555554 22211 1466666666666664 45 4677777777777777776 45532 3467777
Q ss_pred EccCcccCccCcccccCCCCCCeEECcCCcCcccCcccccCCCCCCEEEccCCcCcCcCCcccCCCCCCCEEEccCCccc
Q 005038 274 ALSNNNLQGHLFSRNFNLTNLQWLQLEGNRFVGEIPQSLSKCSSLEGLYLNNNSLLGKIPRWLGNLTRLQYIIMPNNHLE 353 (717)
Q Consensus 274 ~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~ 353 (717)
++++|.+++ ++ .+.++++|++|++++|.+.+ +|.. .++|++|++++|.+. .+|. +..+++|+.|++++|+++
T Consensus 179 ~L~~n~l~~-l~-~~~~l~~L~~L~l~~N~l~~-l~~~---~~~L~~L~l~~n~l~-~lp~-~~~l~~L~~L~l~~N~l~ 250 (454)
T 1jl5_A 179 AAGNNQLEE-LP-ELQNLPFLTAIYADNNSLKK-LPDL---PLSLESIVAGNNILE-ELPE-LQNLPFLTTIYADNNLLK 250 (454)
T ss_dssp ECCSSCCSS-CC-CCTTCTTCCEEECCSSCCSS-CCCC---CTTCCEEECCSSCCS-SCCC-CTTCTTCCEEECCSSCCS
T ss_pred ECcCCcCCc-Cc-cccCCCCCCEEECCCCcCCc-CCCC---cCcccEEECcCCcCC-cccc-cCCCCCCCEEECCCCcCC
Confidence 777777765 33 46677777777777777664 3322 246777777777666 4453 666677777777777666
Q ss_pred CCcccccCCCCCCCEEEccCCcCcccCCCccccccccEEeccCcccccccCccccCCCCcCCEEeCCCCcCCcccchhhh
Q 005038 354 GPIPVEFCQLDSLQILDISDNNISGSLPSCFHPLSIKQVHLSKNMLHGQLKRGTFFNCSSLVTLDLSYNRLNGSIPDWVD 433 (717)
Q Consensus 354 ~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~~~ 433 (717)
+ +|. ..++|+.|++++|++.+ ++.. .++|++|++++|.+++. +.
T Consensus 251 ~-l~~---~~~~L~~L~l~~N~l~~-l~~~---------------------------~~~L~~L~ls~N~l~~l-~~--- 294 (454)
T 1jl5_A 251 T-LPD---LPPSLEALNVRDNYLTD-LPEL---------------------------PQSLTFLDVSENIFSGL-SE--- 294 (454)
T ss_dssp S-CCS---CCTTCCEEECCSSCCSC-CCCC---------------------------CTTCCEEECCSSCCSEE-SC---
T ss_pred c-ccc---cccccCEEECCCCcccc-cCcc---------------------------cCcCCEEECcCCccCcc-cC---
Confidence 4 232 23566666666666553 1111 24556666666655531 11
Q ss_pred CCCCCcEEEcCCCccccccchhccCC-CCCCEEEccCCcCccCCCcccccccccccccCCCCCCcchhhhhhcccccccc
Q 005038 434 GLSQLSHLILGHNNLEGEVSVQLCEL-NQLQLLDLSNNNLHGPIPPCFDNTTLHESYSNSSSPDEQFEIFFSIEGHQGFL 512 (717)
Q Consensus 434 ~l~~L~~L~L~~n~l~~~~~~~l~~l-~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 512 (717)
..++|+.|++++|++++.. .+ ++|+.|++++|++++ +|..
T Consensus 295 ~~~~L~~L~l~~N~l~~i~-----~~~~~L~~L~Ls~N~l~~-lp~~--------------------------------- 335 (454)
T 1jl5_A 295 LPPNLYYLNASSNEIRSLC-----DLPPSLEELNVSNNKLIE-LPAL--------------------------------- 335 (454)
T ss_dssp CCTTCCEEECCSSCCSEEC-----CCCTTCCEEECCSSCCSC-CCCC---------------------------------
T ss_pred cCCcCCEEECcCCcCCccc-----CCcCcCCEEECCCCcccc-cccc---------------------------------
Confidence 1145666666666665321 22 366666666666654 2211
Q ss_pred cccccceEEEeeccceeeeccccccccceeeCCCCccCCCCcccccCCccCCeEeCCCcccCC--CCCcCCCCCCCCCEE
Q 005038 513 EKQNHEIFEFTTKNIAYIYQGKVLSLLSGLDLSCNKLIGHIPPQIGNLTRIQTLNLSHNNLTG--SIPSTFSNLKHVESL 590 (717)
Q Consensus 513 ~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~--~~p~~~~~l~~L~~L 590 (717)
+++|+.|++++|++++ +|. .+++|++|++++|++++ .+|..+..+
T Consensus 336 -----------------------~~~L~~L~L~~N~l~~-lp~---~l~~L~~L~L~~N~l~~l~~ip~~l~~L------ 382 (454)
T 1jl5_A 336 -----------------------PPRLERLIASFNHLAE-VPE---LPQNLKQLHVEYNPLREFPDIPESVEDL------ 382 (454)
T ss_dssp -----------------------CTTCCEEECCSSCCSC-CCC---CCTTCCEEECCSSCCSSCCCCCTTCCEE------
T ss_pred -----------------------CCcCCEEECCCCcccc-ccc---hhhhccEEECCCCCCCcCCCChHHHHhh------
Confidence 1246666666666663 343 35666777777776665 444443322
Q ss_pred ECCCCcCCccCchhhcCCCCCCEEeccCCcCee--cCCCC
Q 005038 591 DLSNNKLNGKIPHQLVELKTLEVFSVAYNNLSG--EIPEW 628 (717)
Q Consensus 591 ~L~~N~i~~~~p~~~~~l~~L~~L~l~~N~l~~--~~p~~ 628 (717)
+.|.+.+.+|.. +++|++|++++|++++ .+|.+
T Consensus 383 --~~n~~~~~i~~~---~~~L~~L~ls~N~l~~~~~iP~s 417 (454)
T 1jl5_A 383 --RMNSHLAEVPEL---PQNLKQLHVETNPLREFPDIPES 417 (454)
T ss_dssp --ECCC----------------------------------
T ss_pred --hhcccccccccc---cCcCCEEECCCCcCCccccchhh
Confidence 234444444432 3566666666666665 55543
No 28
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=100.00 E-value=4.4e-37 Score=327.54 Aligned_cols=385 Identities=24% Similarity=0.281 Sum_probs=187.6
Q ss_pred CCCCEEEccCCCCcccCChhhhhCCCCCCEEEccCCcCcccCccCcCCCCC-------------cCEEEccCCcCCccCC
Q 005038 145 HDLEYVDLSHIKMNGEFPNWLLENNTKLETLFLVNDSLAGPFRLPIHSHKR-------------LRQLDVSNNNIRGHIP 211 (717)
Q Consensus 145 ~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~-------------L~~L~ls~n~i~~~~~ 211 (717)
+.|+++++++|.+ +.+|..+ +++++|++|++++|.+.+..|..++.+++ +++|++++|.++ .+|
T Consensus 11 ~~L~~L~l~~n~l-~~iP~~i-~~L~~L~~L~l~~n~~~~~~p~~~~~l~~L~~l~l~~c~~~~l~~L~l~~~~l~-~lp 87 (454)
T 1jl5_A 11 TFLQEPLRHSSNL-TEMPVEA-ENVKSKTEYYNAWSEWERNAPPGNGEQREMAVSRLRDCLDRQAHELELNNLGLS-SLP 87 (454)
T ss_dssp -------------------------CCHHHHHHHHHHHHHTSCTTSCCCHHHHHHHHHHHHHHTCSEEECTTSCCS-CCC
T ss_pred ccchhhhcccCch-hhCChhH-hcccchhhhhccCCcccccCCcccccchhcchhhhhhhhccCCCEEEecCCccc-cCC
Confidence 3444444444444 3444443 44455555555555444444444444443 467777777766 333
Q ss_pred ccccccCCCCcEEECCCCCCCccCCccccCCCCCCEEEccCCccccccchhhhhCCCCCCEEEccCcccCccCcccccCC
Q 005038 212 VKIGDVLPSLYVFNNSMNALDGSIPSSFGNMKFLQILDLSNNHLTGEIPEHLAVGCVNLQFLALSNNNLQGHLFSRNFNL 291 (717)
Q Consensus 212 ~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~l 291 (717)
. ..++|++|++++|.+++ +|.. .++|++|++++|.++ .++.. .++|++|++++|.+++ +| .+.++
T Consensus 88 ~----~~~~L~~L~l~~n~l~~-lp~~---~~~L~~L~l~~n~l~-~l~~~----~~~L~~L~L~~n~l~~-lp-~~~~l 152 (454)
T 1jl5_A 88 E----LPPHLESLVASCNSLTE-LPEL---PQSLKSLLVDNNNLK-ALSDL----PPLLEYLGVSNNQLEK-LP-ELQNS 152 (454)
T ss_dssp S----CCTTCSEEECCSSCCSS-CCCC---CTTCCEEECCSSCCS-CCCSC----CTTCCEEECCSSCCSS-CC-CCTTC
T ss_pred C----CcCCCCEEEccCCcCCc-cccc---cCCCcEEECCCCccC-cccCC----CCCCCEEECcCCCCCC-Cc-ccCCC
Confidence 3 13566777777766665 4432 356677777777666 33321 2466677777666664 33 46666
Q ss_pred CCCCeEECcCCcCcccCcccccCCCCCCEEEccCCcCcCcCCcccCCCCCCCEEEccCCcccCCcccccCCCCCCCEEEc
Q 005038 292 TNLQWLQLEGNRFVGEIPQSLSKCSSLEGLYLNNNSLLGKIPRWLGNLTRLQYIIMPNNHLEGPIPVEFCQLDSLQILDI 371 (717)
Q Consensus 292 ~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l 371 (717)
++|++|++++|++.+ +|..+ .+|++|++++|.+.+ +| .+..+++|+.|++++|.+++ +|.. .++|++|++
T Consensus 153 ~~L~~L~l~~N~l~~-lp~~~---~~L~~L~L~~n~l~~-l~-~~~~l~~L~~L~l~~N~l~~-l~~~---~~~L~~L~l 222 (454)
T 1jl5_A 153 SFLKIIDVDNNSLKK-LPDLP---PSLEFIAAGNNQLEE-LP-ELQNLPFLTAIYADNNSLKK-LPDL---PLSLESIVA 222 (454)
T ss_dssp TTCCEEECCSSCCSC-CCCCC---TTCCEEECCSSCCSS-CC-CCTTCTTCCEEECCSSCCSS-CCCC---CTTCCEEEC
T ss_pred CCCCEEECCCCcCcc-cCCCc---ccccEEECcCCcCCc-Cc-cccCCCCCCEEECCCCcCCc-CCCC---cCcccEEEC
Confidence 667777777666663 33322 366666666666654 34 46666666666666666664 2221 236666666
Q ss_pred cCCcCcccCCCccccccccEEeccCcccccccCccccCCCCcCCEEeCCCCcCCcccchhhhCCCCCcEEEcCCCccccc
Q 005038 372 SDNNISGSLPSCFHPLSIKQVHLSKNMLHGQLKRGTFFNCSSLVTLDLSYNRLNGSIPDWVDGLSQLSHLILGHNNLEGE 451 (717)
Q Consensus 372 ~~n~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~ 451 (717)
++|.+. .+|.....++|+.|++++|.+.+ ++. ..++|++|++++|++.+ +|.. +++|+.|++++|++++.
T Consensus 223 ~~n~l~-~lp~~~~l~~L~~L~l~~N~l~~-l~~----~~~~L~~L~l~~N~l~~-l~~~---~~~L~~L~ls~N~l~~l 292 (454)
T 1jl5_A 223 GNNILE-ELPELQNLPFLTTIYADNNLLKT-LPD----LPPSLEALNVRDNYLTD-LPEL---PQSLTFLDVSENIFSGL 292 (454)
T ss_dssp CSSCCS-SCCCCTTCTTCCEEECCSSCCSS-CCS----CCTTCCEEECCSSCCSC-CCCC---CTTCCEEECCSSCCSEE
T ss_pred cCCcCC-cccccCCCCCCCEEECCCCcCCc-ccc----cccccCEEECCCCcccc-cCcc---cCcCCEEECcCCccCcc
Confidence 666665 33333335555555555555532 221 12566666666666664 3322 25666666666666642
Q ss_pred cchhccCCCCCCEEEccCCcCccCCCcccccccccccccCCCCCCcchhhhhhcccccccccccccceEEEeeccceeee
Q 005038 452 VSVQLCELNQLQLLDLSNNNLHGPIPPCFDNTTLHESYSNSSSPDEQFEIFFSIEGHQGFLEKQNHEIFEFTTKNIAYIY 531 (717)
Q Consensus 452 ~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 531 (717)
.. -.++|+.|++++|++++...
T Consensus 293 ~~----~~~~L~~L~l~~N~l~~i~~------------------------------------------------------ 314 (454)
T 1jl5_A 293 SE----LPPNLYYLNASSNEIRSLCD------------------------------------------------------ 314 (454)
T ss_dssp SC----CCTTCCEEECCSSCCSEECC------------------------------------------------------
T ss_pred cC----cCCcCCEEECcCCcCCcccC------------------------------------------------------
Confidence 21 12466666666666543110
Q ss_pred ccccccccceeeCCCCccCCCCcccccCCccCCeEeCCCcccCCCCCcCCCCCCCCCEEECCCCcCCc--cCchhhcCCC
Q 005038 532 QGKVLSLLSGLDLSCNKLIGHIPPQIGNLTRIQTLNLSHNNLTGSIPSTFSNLKHVESLDLSNNKLNG--KIPHQLVELK 609 (717)
Q Consensus 532 ~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~N~i~~--~~p~~~~~l~ 609 (717)
..++|+.|++++|++++ +|.. +++|++|++++|+++ .+|. .+++|++|++++|++++ .+|..+..
T Consensus 315 ---~~~~L~~L~Ls~N~l~~-lp~~---~~~L~~L~L~~N~l~-~lp~---~l~~L~~L~L~~N~l~~l~~ip~~l~~-- 381 (454)
T 1jl5_A 315 ---LPPSLEELNVSNNKLIE-LPAL---PPRLERLIASFNHLA-EVPE---LPQNLKQLHVEYNPLREFPDIPESVED-- 381 (454)
T ss_dssp ---CCTTCCEEECCSSCCSC-CCCC---CTTCCEEECCSSCCS-CCCC---CCTTCCEEECCSSCCSSCCCCCTTCCE--
T ss_pred ---CcCcCCEEECCCCcccc-cccc---CCcCCEEECCCCccc-cccc---hhhhccEEECCCCCCCcCCCChHHHHh--
Confidence 01256667777777664 3432 466677777777766 3444 35667777777777765 44443322
Q ss_pred CCCEEeccCCcCeecCCCCCcccCCCCcccccCCcCCC
Q 005038 610 TLEVFSVAYNNLSGEIPEWKAQFATFNESSYEGNTFLC 647 (717)
Q Consensus 610 ~L~~L~l~~N~l~~~~p~~~~~~~~l~~~~~~~n~~~c 647 (717)
++.|.+.+.+|.. +.+++.+.+.+|+...
T Consensus 382 ------L~~n~~~~~i~~~---~~~L~~L~ls~N~l~~ 410 (454)
T 1jl5_A 382 ------LRMNSHLAEVPEL---PQNLKQLHVETNPLRE 410 (454)
T ss_dssp ------EECCC---------------------------
T ss_pred ------hhhcccccccccc---cCcCCEEECCCCcCCc
Confidence 3345566666653 3678888899998775
No 29
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=100.00 E-value=7.5e-37 Score=331.13 Aligned_cols=346 Identities=20% Similarity=0.197 Sum_probs=249.9
Q ss_pred cEEECCCCCCCccCCccccCCCCCCEEEccCCccccccchhhhhCCCCCCEEEccCcccCccCcccccCCCCCCeEECcC
Q 005038 222 YVFNNSMNALDGSIPSSFGNMKFLQILDLSNNHLTGEIPEHLAVGCVNLQFLALSNNNLQGHLFSRNFNLTNLQWLQLEG 301 (717)
Q Consensus 222 ~~L~l~~n~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~ 301 (717)
+.++.+++.++ .+|..+. +++++|++++|.++ .++...+..+++|++|++++|.+++..+..|.++++|++|+|++
T Consensus 14 ~~v~c~~~~l~-~ip~~~~--~~l~~L~L~~n~l~-~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~ 89 (477)
T 2id5_A 14 RAVLCHRKRFV-AVPEGIP--TETRLLDLGKNRIK-TLNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRS 89 (477)
T ss_dssp TEEECCSCCCS-SCCSCCC--TTCSEEECCSSCCC-EECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCS
T ss_pred CEEEeCCCCcC-cCCCCCC--CCCcEEECCCCccc-eECHhHccCCCCCCEEECCCCccCEeChhhhhCCccCCEEECCC
Confidence 45566665555 3444332 46677777777776 44433444567777777777777666666666777777777777
Q ss_pred CcCcccCcccccCCCCCCEEEccCCcCcCcCCcccCCCCCCCEEEccCCcccCCcccccCCCCCCCEEEccCCcCcccCC
Q 005038 302 NRFVGEIPQSLSKCSSLEGLYLNNNSLLGKIPRWLGNLTRLQYIIMPNNHLEGPIPVEFCQLDSLQILDISDNNISGSLP 381 (717)
Q Consensus 302 n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~ 381 (717)
|.+....+..|..+++|++|++++|.+.+..+..|..+++|+.|++++|.+.+..+..|..+++|++|++++|.+.
T Consensus 90 n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~---- 165 (477)
T 2id5_A 90 NRLKLIPLGVFTGLSNLTKLDISENKIVILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCNLT---- 165 (477)
T ss_dssp SCCCSCCTTSSTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEEECCTTCCEECTTSSTTCTTCCEEEEESCCCS----
T ss_pred CcCCccCcccccCCCCCCEEECCCCccccCChhHccccccCCEEECCCCccceeChhhccCCCCCCEEECCCCcCc----
Confidence 7666555555666677777777777666666666666667777777766666665666666666666666666554
Q ss_pred CccccccccEEeccCcccccccCccccCCCCcCCEEeCCCCcCCcccchhhhCCCCCcEEEcCCCccccccchhccCCCC
Q 005038 382 SCFHPLSIKQVHLSKNMLHGQLKRGTFFNCSSLVTLDLSYNRLNGSIPDWVDGLSQLSHLILGHNNLEGEVSVQLCELNQ 461 (717)
Q Consensus 382 ~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~ 461 (717)
.++...|..+++|+.|++++|.+.+..+..|..+++|+.|++++|...+..+.......+
T Consensus 166 --------------------~~~~~~l~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~ 225 (477)
T 2id5_A 166 --------------------SIPTEALSHLHGLIVLRLRHLNINAIRDYSFKRLYRLKVLEISHWPYLDTMTPNCLYGLN 225 (477)
T ss_dssp --------------------SCCHHHHTTCTTCCEEEEESCCCCEECTTCSCSCTTCCEEEEECCTTCCEECTTTTTTCC
T ss_pred --------------------ccChhHhcccCCCcEEeCCCCcCcEeChhhcccCcccceeeCCCCccccccCcccccCcc
Confidence 233444778889999999999998877778888999999999998877677766666778
Q ss_pred CCEEEccCCcCccCCCcccccccccccccCCCCCCcchhhhhhcccccccccccccceEEEeeccceeeeccccccccce
Q 005038 462 LQLLDLSNNNLHGPIPPCFDNTTLHESYSNSSSPDEQFEIFFSIEGHQGFLEKQNHEIFEFTTKNIAYIYQGKVLSLLSG 541 (717)
Q Consensus 462 L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~ 541 (717)
|+.|++++|.+++..+..+.. ++.|+.
T Consensus 226 L~~L~l~~n~l~~~~~~~~~~-----------------------------------------------------l~~L~~ 252 (477)
T 2id5_A 226 LTSLSITHCNLTAVPYLAVRH-----------------------------------------------------LVYLRF 252 (477)
T ss_dssp CSEEEEESSCCCSCCHHHHTT-----------------------------------------------------CTTCCE
T ss_pred ccEEECcCCcccccCHHHhcC-----------------------------------------------------ccccCe
Confidence 999999999887544344433 347999
Q ss_pred eeCCCCccCCCCcccccCCccCCeEeCCCcccCCCCCcCCCCCCCCCEEECCCCcCCccCchhhcCCCCCCEEeccCCcC
Q 005038 542 LDLSCNKLIGHIPPQIGNLTRIQTLNLSHNNLTGSIPSTFSNLKHVESLDLSNNKLNGKIPHQLVELKTLEVFSVAYNNL 621 (717)
Q Consensus 542 L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~N~i~~~~p~~~~~l~~L~~L~l~~N~l 621 (717)
|+|++|++++..+..|..+++|++|+|++|++++..|..|.++++|++|+|++|++++..+..|..+++|+.|++++|++
T Consensus 253 L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l 332 (477)
T 2id5_A 253 LNLSYNPISTIEGSMLHELLRLQEIQLVGGQLAVVEPYAFRGLNYLRVLNVSGNQLTTLEESVFHSVGNLETLILDSNPL 332 (477)
T ss_dssp EECCSSCCCEECTTSCTTCTTCCEEECCSSCCSEECTTTBTTCTTCCEEECCSSCCSCCCGGGBSCGGGCCEEECCSSCE
T ss_pred eECCCCcCCccChhhccccccCCEEECCCCccceECHHHhcCcccCCEEECCCCcCceeCHhHcCCCcccCEEEccCCCc
Confidence 99999999888888899999999999999999988889999999999999999999977777888899999999999999
Q ss_pred eecCCC-CCcccCCCCcccccCCcCCCCCC
Q 005038 622 SGEIPE-WKAQFATFNESSYEGNTFLCGLP 650 (717)
Q Consensus 622 ~~~~p~-~~~~~~~l~~~~~~~n~~~c~~~ 650 (717)
.+.++. |+ +.......+.++...|..|
T Consensus 333 ~c~c~~~~~--~~~~~~~~~~~~~~~C~~p 360 (477)
T 2id5_A 333 ACDCRLLWV--FRRRWRLNFNRQQPTCATP 360 (477)
T ss_dssp ECSGGGHHH--HTTTTSSCCTTCCCBEEES
T ss_pred cCccchHhH--HhhhhccccCccCceeCCc
Confidence 876542 21 2223334556666555443
No 30
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=100.00 E-value=1.7e-36 Score=328.32 Aligned_cols=350 Identities=20% Similarity=0.194 Sum_probs=300.2
Q ss_pred cCEEEccCCcCCccCCccccccCCCCcEEECCCCCCCccCCccccCCCCCCEEEccCCccccccchhhhhCCCCCCEEEc
Q 005038 196 LRQLDVSNNNIRGHIPVKIGDVLPSLYVFNNSMNALDGSIPSSFGNMKFLQILDLSNNHLTGEIPEHLAVGCVNLQFLAL 275 (717)
Q Consensus 196 L~~L~ls~n~i~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~L~~L~L 275 (717)
-+.++.+++.++ .+|..+. +++++|++++|.+.+..+..|.++++|++|++++|.+++..|. .+.++++|++|++
T Consensus 13 ~~~v~c~~~~l~-~ip~~~~---~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~-~~~~l~~L~~L~L 87 (477)
T 2id5_A 13 DRAVLCHRKRFV-AVPEGIP---TETRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVSAVEPG-AFNNLFNLRTLGL 87 (477)
T ss_dssp TTEEECCSCCCS-SCCSCCC---TTCSEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTT-TTTTCTTCCEEEC
T ss_pred CCEEEeCCCCcC-cCCCCCC---CCCcEEECCCCccceECHhHccCCCCCCEEECCCCccCEeChh-hhhCCccCCEEEC
Confidence 357889999887 7887654 5899999999999988889999999999999999999844444 4457999999999
Q ss_pred cCcccCccCcccccCCCCCCeEECcCCcCcccCcccccCCCCCCEEEccCCcCcCcCCcccCCCCCCCEEEccCCcccCC
Q 005038 276 SNNNLQGHLFSRNFNLTNLQWLQLEGNRFVGEIPQSLSKCSSLEGLYLNNNSLLGKIPRWLGNLTRLQYIIMPNNHLEGP 355 (717)
Q Consensus 276 ~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~ 355 (717)
++|.++...+..|.++++|++|++++|.+.+..+..|..+++|++|++++|.+.+..+..|..+++|+.|++++|.+++.
T Consensus 88 ~~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~ 167 (477)
T 2id5_A 88 RSNRLKLIPLGVFTGLSNLTKLDISENKIVILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCNLTSI 167 (477)
T ss_dssp CSSCCCSCCTTSSTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEEECCTTCCEECTTSSTTCTTCCEEEEESCCCSSC
T ss_pred CCCcCCccCcccccCCCCCCEEECCCCccccCChhHccccccCCEEECCCCccceeChhhccCCCCCCEEECCCCcCccc
Confidence 99999987777889999999999999999988888999999999999999999988888999999999999999999988
Q ss_pred cccccCCCCCCCEEEccCCcCcccCCCccccccccEEeccCcccccccCccccCCCCcCCEEeCCCCcCCcccchhhhCC
Q 005038 356 IPVEFCQLDSLQILDISDNNISGSLPSCFHPLSIKQVHLSKNMLHGQLKRGTFFNCSSLVTLDLSYNRLNGSIPDWVDGL 435 (717)
Q Consensus 356 ~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~~~~l 435 (717)
.+..+..+++|+.|++++|.+.+. +...|..+++|++|++++|...+.++......
T Consensus 168 ~~~~l~~l~~L~~L~l~~n~i~~~------------------------~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~ 223 (477)
T 2id5_A 168 PTEALSHLHGLIVLRLRHLNINAI------------------------RDYSFKRLYRLKVLEISHWPYLDTMTPNCLYG 223 (477)
T ss_dssp CHHHHTTCTTCCEEEEESCCCCEE------------------------CTTCSCSCTTCCEEEEECCTTCCEECTTTTTT
T ss_pred ChhHhcccCCCcEEeCCCCcCcEe------------------------ChhhcccCcccceeeCCCCccccccCcccccC
Confidence 778899999999999999987632 22347788999999999998877777766666
Q ss_pred CCCcEEEcCCCccccccchhccCCCCCCEEEccCCcCccCCCcccccccccccccCCCCCCcchhhhhhccccccccccc
Q 005038 436 SQLSHLILGHNNLEGEVSVQLCELNQLQLLDLSNNNLHGPIPPCFDNTTLHESYSNSSSPDEQFEIFFSIEGHQGFLEKQ 515 (717)
Q Consensus 436 ~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 515 (717)
.+|+.|++++|++++..+..+..+++|+.|++++|++++..+..|..+
T Consensus 224 ~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l-------------------------------- 271 (477)
T 2id5_A 224 LNLTSLSITHCNLTAVPYLAVRHLVYLRFLNLSYNPISTIEGSMLHEL-------------------------------- 271 (477)
T ss_dssp CCCSEEEEESSCCCSCCHHHHTTCTTCCEEECCSSCCCEECTTSCTTC--------------------------------
T ss_pred ccccEEECcCCcccccCHHHhcCccccCeeECCCCcCCccChhhcccc--------------------------------
Confidence 799999999999997777789999999999999999987777666543
Q ss_pred ccceEEEeeccceeeeccccccccceeeCCCCccCCCCcccccCCccCCeEeCCCcccCCCCCcCCCCCCCCCEEECCCC
Q 005038 516 NHEIFEFTTKNIAYIYQGKVLSLLSGLDLSCNKLIGHIPPQIGNLTRIQTLNLSHNNLTGSIPSTFSNLKHVESLDLSNN 595 (717)
Q Consensus 516 ~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~N 595 (717)
++|+.|+|++|++.+..|..|..+++|++|+|++|++++..+..|..+++|++|++++|
T Consensus 272 ---------------------~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N 330 (477)
T 2id5_A 272 ---------------------LRLQEIQLVGGQLAVVEPYAFRGLNYLRVLNVSGNQLTTLEESVFHSVGNLETLILDSN 330 (477)
T ss_dssp ---------------------TTCCEEECCSSCCSEECTTTBTTCTTCCEEECCSSCCSCCCGGGBSCGGGCCEEECCSS
T ss_pred ---------------------ccCCEEECCCCccceECHHHhcCcccCCEEECCCCcCceeCHhHcCCCcccCEEEccCC
Confidence 37999999999999988999999999999999999999888888999999999999999
Q ss_pred cCCccCchhhcCCCCCCEEeccCCcCeecCCCC
Q 005038 596 KLNGKIPHQLVELKTLEVFSVAYNNLSGEIPEW 628 (717)
Q Consensus 596 ~i~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~ 628 (717)
++.+..+..+ -......+++.++...+.-|..
T Consensus 331 ~l~c~c~~~~-~~~~~~~~~~~~~~~~C~~p~~ 362 (477)
T 2id5_A 331 PLACDCRLLW-VFRRRWRLNFNRQQPTCATPEF 362 (477)
T ss_dssp CEECSGGGHH-HHTTTTSSCCTTCCCBEEESGG
T ss_pred CccCccchHh-HHhhhhccccCccCceeCCchH
Confidence 9986544321 1223444567777777776754
No 31
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=100.00 E-value=5.2e-35 Score=314.94 Aligned_cols=346 Identities=27% Similarity=0.369 Sum_probs=238.4
Q ss_pred CCCCCEEEccCCcCcccCccCcCCCCCcCEEEccCCcCCccCCccccccCCCCcEEECCCCCCCccCCccccCCCCCCEE
Q 005038 169 NTKLETLFLVNDSLAGPFRLPIHSHKRLRQLDVSNNNIRGHIPVKIGDVLPSLYVFNNSMNALDGSIPSSFGNMKFLQIL 248 (717)
Q Consensus 169 ~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~ls~n~i~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L 248 (717)
+++++.|++.++.+... + .+..+++|++|++++|.+++ ++. ...+++|++|++++|.+.+..+ +.++++|++|
T Consensus 45 l~~l~~L~l~~~~i~~l-~-~~~~l~~L~~L~Ls~n~l~~-~~~--~~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L 117 (466)
T 1o6v_A 45 LDQVTTLQADRLGIKSI-D-GVEYLNNLTQINFSNNQLTD-ITP--LKNLTKLVDILMNNNQIADITP--LANLTNLTGL 117 (466)
T ss_dssp HHTCCEEECCSSCCCCC-T-TGGGCTTCCEEECCSSCCCC-CGG--GTTCTTCCEEECCSSCCCCCGG--GTTCTTCCEE
T ss_pred hccccEEecCCCCCccC-c-chhhhcCCCEEECCCCccCC-chh--hhccccCCEEECCCCccccChh--hcCCCCCCEE
Confidence 45677777777776542 2 35667777777777777763 332 3346667777777776664433 6666677777
Q ss_pred EccCCccccccchhhhhCCCCCCEEEccCcccCccCcccccCCCCCCeEECcCCcCcccCcccccCCCCCCEEEccCCcC
Q 005038 249 DLSNNHLTGEIPEHLAVGCVNLQFLALSNNNLQGHLFSRNFNLTNLQWLQLEGNRFVGEIPQSLSKCSSLEGLYLNNNSL 328 (717)
Q Consensus 249 ~Ls~n~l~~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~~ 328 (717)
++++|.++ .++. +..+++|++|++++|.+.+. ..+..+++|++|+++ |.+.+.. .+..+++|++|++++|.+
T Consensus 118 ~L~~n~l~-~~~~--~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~l~-~~~~~~~--~~~~l~~L~~L~l~~n~l 189 (466)
T 1o6v_A 118 TLFNNQIT-DIDP--LKNLTNLNRLELSSNTISDI--SALSGLTSLQQLSFG-NQVTDLK--PLANLTTLERLDISSNKV 189 (466)
T ss_dssp ECCSSCCC-CCGG--GTTCTTCSEEEEEEEEECCC--GGGTTCTTCSEEEEE-ESCCCCG--GGTTCTTCCEEECCSSCC
T ss_pred ECCCCCCC-CChH--HcCCCCCCEEECCCCccCCC--hhhccCCcccEeecC-CcccCch--hhccCCCCCEEECcCCcC
Confidence 77766666 3433 33566666666666666542 235566666666664 2333221 255666666666666665
Q ss_pred cCcCCcccCCCCCCCEEEccCCcccCCcccccCCCCCCCEEEccCCcCcccCCCccccccccEEeccCcccccccCcccc
Q 005038 329 LGKIPRWLGNLTRLQYIIMPNNHLEGPIPVEFCQLDSLQILDISDNNISGSLPSCFHPLSIKQVHLSKNMLHGQLKRGTF 408 (717)
Q Consensus 329 ~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~ 408 (717)
.+. ..+..+++|+.|++++|.+.+..+ +..+++|++|++++|.+. + + ..+
T Consensus 190 ~~~--~~l~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~-----------------------~-~--~~l 239 (466)
T 1o6v_A 190 SDI--SVLAKLTNLESLIATNNQISDITP--LGILTNLDELSLNGNQLK-----------------------D-I--GTL 239 (466)
T ss_dssp CCC--GGGGGCTTCSEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCC-----------------------C-C--GGG
T ss_pred CCC--hhhccCCCCCEEEecCCccccccc--ccccCCCCEEECCCCCcc-----------------------c-c--hhh
Confidence 532 235556666666666666654433 444556666666655544 2 1 126
Q ss_pred CCCCcCCEEeCCCCcCCcccchhhhCCCCCcEEEcCCCccccccchhccCCCCCCEEEccCCcCccCCCccccccccccc
Q 005038 409 FNCSSLVTLDLSYNRLNGSIPDWVDGLSQLSHLILGHNNLEGEVSVQLCELNQLQLLDLSNNNLHGPIPPCFDNTTLHES 488 (717)
Q Consensus 409 ~~~~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~ 488 (717)
..+++|++|++++|.+.+..+ +..+++|+.|++++|++++..+ +..+++|+.|++++|++.+..+ +..
T Consensus 240 ~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~L~~n~l~~~~~--~~~------ 307 (466)
T 1o6v_A 240 ASLTNLTDLDLANNQISNLAP--LSGLTKLTELKLGANQISNISP--LAGLTALTNLELNENQLEDISP--ISN------ 307 (466)
T ss_dssp GGCTTCSEEECCSSCCCCCGG--GTTCTTCSEEECCSSCCCCCGG--GTTCTTCSEEECCSSCCSCCGG--GGG------
T ss_pred hcCCCCCEEECCCCccccchh--hhcCCCCCEEECCCCccCcccc--ccCCCccCeEEcCCCcccCchh--hcC------
Confidence 677889999999998886544 7888999999999999886554 7888999999999998875433 222
Q ss_pred ccCCCCCCcchhhhhhcccccccccccccceEEEeeccceeeeccccccccceeeCCCCccCCCCcccccCCccCCeEeC
Q 005038 489 YSNSSSPDEQFEIFFSIEGHQGFLEKQNHEIFEFTTKNIAYIYQGKVLSLLSGLDLSCNKLIGHIPPQIGNLTRIQTLNL 568 (717)
Q Consensus 489 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L 568 (717)
+++|+.|++++|++++..| +..+++|++|++
T Consensus 308 -----------------------------------------------l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~l 338 (466)
T 1o6v_A 308 -----------------------------------------------LKNLTYLTLYFNNISDISP--VSSLTKLQRLFF 338 (466)
T ss_dssp -----------------------------------------------CTTCSEEECCSSCCSCCGG--GGGCTTCCEEEC
T ss_pred -----------------------------------------------CCCCCEEECcCCcCCCchh--hccCccCCEeEC
Confidence 3479999999999987655 788999999999
Q ss_pred CCcccCCCCCcCCCCCCCCCEEECCCCcCCccCchhhcCCCCCCEEeccCCcCeec
Q 005038 569 SHNNLTGSIPSTFSNLKHVESLDLSNNKLNGKIPHQLVELKTLEVFSVAYNNLSGE 624 (717)
Q Consensus 569 s~n~l~~~~p~~~~~l~~L~~L~L~~N~i~~~~p~~~~~l~~L~~L~l~~N~l~~~ 624 (717)
++|++++. ..+..+++|++|++++|++++..| +..+++|+.|++++|++++.
T Consensus 339 ~~n~l~~~--~~l~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~~~~~ 390 (466)
T 1o6v_A 339 YNNKVSDV--SSLANLTNINWLSAGHNQISDLTP--LANLTRITQLGLNDQAWTNA 390 (466)
T ss_dssp CSSCCCCC--GGGTTCTTCCEEECCSSCCCBCGG--GTTCTTCCEEECCCEEEECC
T ss_pred CCCccCCc--hhhccCCCCCEEeCCCCccCccch--hhcCCCCCEEeccCCcccCC
Confidence 99999865 468899999999999999987766 78899999999999999863
No 32
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=100.00 E-value=1.8e-34 Score=310.70 Aligned_cols=345 Identities=26% Similarity=0.362 Sum_probs=263.6
Q ss_pred CCCCCEEEccCCCCcccCChhhhhCCCCCCEEEccCCcCcccCccCcCCCCCcCEEEccCCcCCccCCccccccCCCCcE
Q 005038 144 QHDLEYVDLSHIKMNGEFPNWLLENNTKLETLFLVNDSLAGPFRLPIHSHKRLRQLDVSNNNIRGHIPVKIGDVLPSLYV 223 (717)
Q Consensus 144 ~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~ls~n~i~~~~~~~~~~~l~~L~~ 223 (717)
+++++.|+++++.+. .+|. +..+++|++|++++|.+.+..+ +..+++|++|++++|.+++. +. ...+++|++
T Consensus 45 l~~l~~L~l~~~~i~-~l~~--~~~l~~L~~L~Ls~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~-~~--~~~l~~L~~ 116 (466)
T 1o6v_A 45 LDQVTTLQADRLGIK-SIDG--VEYLNNLTQINFSNNQLTDITP--LKNLTKLVDILMNNNQIADI-TP--LANLTNLTG 116 (466)
T ss_dssp HHTCCEEECCSSCCC-CCTT--GGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCCC-GG--GTTCTTCCE
T ss_pred hccccEEecCCCCCc-cCcc--hhhhcCCCEEECCCCccCCchh--hhccccCCEEECCCCccccC-hh--hcCCCCCCE
Confidence 456777777777776 4554 3567888888888887776543 77788888888888888743 33 445778888
Q ss_pred EECCCCCCCccCCccccCCCCCCEEEccCCccccccchhhhhCCCCCCEEEccCcccCccCcccccCCCCCCeEECcCCc
Q 005038 224 FNNSMNALDGSIPSSFGNMKFLQILDLSNNHLTGEIPEHLAVGCVNLQFLALSNNNLQGHLFSRNFNLTNLQWLQLEGNR 303 (717)
Q Consensus 224 L~l~~n~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~ 303 (717)
|++++|.+.+..+ +..+++|++|++++|.+. .++. +..+++|++|+++ +.+.+. ..+..+++|++|++++|.
T Consensus 117 L~L~~n~l~~~~~--~~~l~~L~~L~l~~n~l~-~~~~--~~~l~~L~~L~l~-~~~~~~--~~~~~l~~L~~L~l~~n~ 188 (466)
T 1o6v_A 117 LTLFNNQITDIDP--LKNLTNLNRLELSSNTIS-DISA--LSGLTSLQQLSFG-NQVTDL--KPLANLTTLERLDISSNK 188 (466)
T ss_dssp EECCSSCCCCCGG--GTTCTTCSEEEEEEEEEC-CCGG--GTTCTTCSEEEEE-ESCCCC--GGGTTCTTCCEEECCSSC
T ss_pred EECCCCCCCCChH--HcCCCCCCEEECCCCccC-CChh--hccCCcccEeecC-CcccCc--hhhccCCCCCEEECcCCc
Confidence 8888888875433 888999999999999887 5553 4468999999996 445433 337889999999999998
Q ss_pred CcccCcccccCCCCCCEEEccCCcCcCcCCcccCCCCCCCEEEccCCcccCCcccccCCCCCCCEEEccCCcCcccCCCc
Q 005038 304 FVGEIPQSLSKCSSLEGLYLNNNSLLGKIPRWLGNLTRLQYIIMPNNHLEGPIPVEFCQLDSLQILDISDNNISGSLPSC 383 (717)
Q Consensus 304 l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~ 383 (717)
+.+. ..+..+++|++|++++|.+.+..+ ++.+++|+.|++++|.+.+. ..+..+++|+.|++++|.+.+..+
T Consensus 189 l~~~--~~l~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~l~~n~l~~~~~-- 260 (466)
T 1o6v_A 189 VSDI--SVLAKLTNLESLIATNNQISDITP--LGILTNLDELSLNGNQLKDI--GTLASLTNLTDLDLANNQISNLAP-- 260 (466)
T ss_dssp CCCC--GGGGGCTTCSEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCCCGG--
T ss_pred CCCC--hhhccCCCCCEEEecCCccccccc--ccccCCCCEEECCCCCcccc--hhhhcCCCCCEEECCCCccccchh--
Confidence 8754 347889999999999999886554 67789999999999998864 457788899999999888763211
Q ss_pred cccccccEEeccCcccccccCccccCCCCcCCEEeCCCCcCCcccchhhhCCCCCcEEEcCCCccccccchhccCCCCCC
Q 005038 384 FHPLSIKQVHLSKNMLHGQLKRGTFFNCSSLVTLDLSYNRLNGSIPDWVDGLSQLSHLILGHNNLEGEVSVQLCELNQLQ 463 (717)
Q Consensus 384 ~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~ 463 (717)
+..+++|++|++++|.+.+..+ +..+++|+.|++++|++++..+ +..+++|+
T Consensus 261 ------------------------~~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~ 312 (466)
T 1o6v_A 261 ------------------------LSGLTKLTELKLGANQISNISP--LAGLTALTNLELNENQLEDISP--ISNLKNLT 312 (466)
T ss_dssp ------------------------GTTCTTCSEEECCSSCCCCCGG--GTTCTTCSEEECCSSCCSCCGG--GGGCTTCS
T ss_pred ------------------------hhcCCCCCEEECCCCccCcccc--ccCCCccCeEEcCCCcccCchh--hcCCCCCC
Confidence 5567788888888888875443 7778888888888888876544 67788888
Q ss_pred EEEccCCcCccCCCcccccccccccccCCCCCCcchhhhhhcccccccccccccceEEEeeccceeeeccccccccceee
Q 005038 464 LLDLSNNNLHGPIPPCFDNTTLHESYSNSSSPDEQFEIFFSIEGHQGFLEKQNHEIFEFTTKNIAYIYQGKVLSLLSGLD 543 (717)
Q Consensus 464 ~L~L~~n~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~ 543 (717)
.|++++|++++..| +.. ++.|+.|+
T Consensus 313 ~L~L~~n~l~~~~~--~~~-----------------------------------------------------l~~L~~L~ 337 (466)
T 1o6v_A 313 YLTLYFNNISDISP--VSS-----------------------------------------------------LTKLQRLF 337 (466)
T ss_dssp EEECCSSCCSCCGG--GGG-----------------------------------------------------CTTCCEEE
T ss_pred EEECcCCcCCCchh--hcc-----------------------------------------------------CccCCEeE
Confidence 88888888775443 221 34788888
Q ss_pred CCCCccCCCCcccccCCccCCeEeCCCcccCCCCCcCCCCCCCCCEEECCCCcCCc
Q 005038 544 LSCNKLIGHIPPQIGNLTRIQTLNLSHNNLTGSIPSTFSNLKHVESLDLSNNKLNG 599 (717)
Q Consensus 544 L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~N~i~~ 599 (717)
+++|++++. ..+..+++|++|++++|++++..| +..+++|++|++++|++++
T Consensus 338 l~~n~l~~~--~~l~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~~~~ 389 (466)
T 1o6v_A 338 FYNNKVSDV--SSLANLTNINWLSAGHNQISDLTP--LANLTRITQLGLNDQAWTN 389 (466)
T ss_dssp CCSSCCCCC--GGGTTCTTCCEEECCSSCCCBCGG--GTTCTTCCEEECCCEEEEC
T ss_pred CCCCccCCc--hhhccCCCCCEEeCCCCccCccch--hhcCCCCCEEeccCCcccC
Confidence 888888865 468888899999999999987766 7888999999999998885
No 33
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=100.00 E-value=1.4e-35 Score=316.28 Aligned_cols=363 Identities=19% Similarity=0.167 Sum_probs=255.3
Q ss_pred CCCCchhhcCCCCCCEEEccCCCCcccCChhhhhCCCCCCEEEccCCcCcccCccCcCCCCCcCEEEccCCcCCccCCcc
Q 005038 134 GFIFPKFLYHQHDLEYVDLSHIKMNGEFPNWLLENNTKLETLFLVNDSLAGPFRLPIHSHKRLRQLDVSNNNIRGHIPVK 213 (717)
Q Consensus 134 ~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~ls~n~i~~~~~~~ 213 (717)
.+..+..+..+++|++|++++|.+++ +| . +..+++|++|++++|.+.+. +++.+++|++|++++|.+++ ++
T Consensus 31 ~~~~~~~~~~l~~L~~L~Ls~n~l~~-~~-~-l~~l~~L~~L~Ls~n~l~~~---~~~~l~~L~~L~Ls~N~l~~-~~-- 101 (457)
T 3bz5_A 31 QATDTISEEQLATLTSLDCHNSSITD-MT-G-IEKLTGLTKLICTSNNITTL---DLSQNTNLTYLACDSNKLTN-LD-- 101 (457)
T ss_dssp CTTSEEEHHHHTTCCEEECCSSCCCC-CT-T-GGGCTTCSEEECCSSCCSCC---CCTTCTTCSEEECCSSCCSC-CC--
T ss_pred CcccccChhHcCCCCEEEccCCCccc-Ch-h-hcccCCCCEEEccCCcCCeE---ccccCCCCCEEECcCCCCce-ee--
Confidence 33445567788899999999998884 45 3 47888999999999988874 37788889999999988874 33
Q ss_pred ccccCCCCcEEECCCCCCCccCCccccCCCCCCEEEccCCccccccchhhhhCCCCCCEEEccCcccCccCcccccCCCC
Q 005038 214 IGDVLPSLYVFNNSMNALDGSIPSSFGNMKFLQILDLSNNHLTGEIPEHLAVGCVNLQFLALSNNNLQGHLFSRNFNLTN 293 (717)
Q Consensus 214 ~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~ 293 (717)
...+++|++|++++|.+++. | +..+++|++|++++|.+++ ++ +..+++|++|++++|...+.. .+..+++
T Consensus 102 -~~~l~~L~~L~L~~N~l~~l-~--~~~l~~L~~L~l~~N~l~~-l~---l~~l~~L~~L~l~~n~~~~~~--~~~~l~~ 171 (457)
T 3bz5_A 102 -VTPLTKLTYLNCDTNKLTKL-D--VSQNPLLTYLNCARNTLTE-ID---VSHNTQLTELDCHLNKKITKL--DVTPQTQ 171 (457)
T ss_dssp -CTTCTTCCEEECCSSCCSCC-C--CTTCTTCCEEECTTSCCSC-CC---CTTCTTCCEEECTTCSCCCCC--CCTTCTT
T ss_pred -cCCCCcCCEEECCCCcCCee-c--CCCCCcCCEEECCCCccce-ec---cccCCcCCEEECCCCCccccc--ccccCCc
Confidence 33477888888888888763 3 7788888888888888873 43 335788888888888544333 4667788
Q ss_pred CCeEECcCCcCcccCcccccCCCCCCEEEccCCcCcCcCCcccCCCCCCCEEEccCCcccCCcccccCCCCCCCEEEccC
Q 005038 294 LQWLQLEGNRFVGEIPQSLSKCSSLEGLYLNNNSLLGKIPRWLGNLTRLQYIIMPNNHLEGPIPVEFCQLDSLQILDISD 373 (717)
Q Consensus 294 L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~ 373 (717)
|++|++++|++++. | +..+++|+.|++++|.+.+. .+..+++|+.|++++|++++ +| +..+++|+.|++++
T Consensus 172 L~~L~ls~n~l~~l-~--l~~l~~L~~L~l~~N~l~~~---~l~~l~~L~~L~Ls~N~l~~-ip--~~~l~~L~~L~l~~ 242 (457)
T 3bz5_A 172 LTTLDCSFNKITEL-D--VSQNKLLNRLNCDTNNITKL---DLNQNIQLTFLDCSSNKLTE-ID--VTPLTQLTYFDCSV 242 (457)
T ss_dssp CCEEECCSSCCCCC-C--CTTCTTCCEEECCSSCCSCC---CCTTCTTCSEEECCSSCCSC-CC--CTTCTTCSEEECCS
T ss_pred CCEEECCCCcccee-c--cccCCCCCEEECcCCcCCee---ccccCCCCCEEECcCCcccc-cC--ccccCCCCEEEeeC
Confidence 88888888887753 3 67778888888888887754 36777888888888888876 34 66777888888888
Q ss_pred CcCcccCCCccccccccEEeccCcccccccCccccCCCCcCCEEeCCCCcCCcccchhhhCCCCCcEEEcCCCccccccc
Q 005038 374 NNISGSLPSCFHPLSIKQVHLSKNMLHGQLKRGTFFNCSSLVTLDLSYNRLNGSIPDWVDGLSQLSHLILGHNNLEGEVS 453 (717)
Q Consensus 374 n~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~ 453 (717)
|++.+..+ ..+++|+.++++.| +|+.|++++|.+.+.+| +..+++|+.|++++|...+..|
T Consensus 243 N~l~~~~~--~~l~~L~~L~l~~n---------------~L~~L~l~~n~~~~~~~--~~~l~~L~~L~Ls~n~~l~~l~ 303 (457)
T 3bz5_A 243 NPLTELDV--STLSKLTTLHCIQT---------------DLLEIDLTHNTQLIYFQ--AEGCRKIKELDVTHNTQLYLLD 303 (457)
T ss_dssp SCCSCCCC--TTCTTCCEEECTTC---------------CCSCCCCTTCTTCCEEE--CTTCTTCCCCCCTTCTTCCEEE
T ss_pred CcCCCcCH--HHCCCCCEEeccCC---------------CCCEEECCCCccCCccc--ccccccCCEEECCCCcccceec
Confidence 87765432 12334444444332 33445555555444443 3445555555555555444443
Q ss_pred hhccCCCCCCEEEccCCcCccCCCcccccccccccccCCCCCCcchhhhhhcccccccccccccceEEEeeccceeeecc
Q 005038 454 VQLCELNQLQLLDLSNNNLHGPIPPCFDNTTLHESYSNSSSPDEQFEIFFSIEGHQGFLEKQNHEIFEFTTKNIAYIYQG 533 (717)
Q Consensus 454 ~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 533 (717)
. ..++|+.|++++|
T Consensus 304 ~---~~~~L~~L~l~~~--------------------------------------------------------------- 317 (457)
T 3bz5_A 304 C---QAAGITELDLSQN--------------------------------------------------------------- 317 (457)
T ss_dssp C---TTCCCSCCCCTTC---------------------------------------------------------------
T ss_pred c---CCCcceEechhhc---------------------------------------------------------------
Confidence 2 2334444444433
Q ss_pred ccccccceeeCCCCccCCCCcccccCCccCCeEeCCCcccCCCCCcCCCCCCCCCEEECCCCcCCccCchhhcCCCCCCE
Q 005038 534 KVLSLLSGLDLSCNKLIGHIPPQIGNLTRIQTLNLSHNNLTGSIPSTFSNLKHVESLDLSNNKLNGKIPHQLVELKTLEV 613 (717)
Q Consensus 534 ~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~N~i~~~~p~~~~~l~~L~~ 613 (717)
+.|+.|++++|++++. .++.+++|+.|++++|++++ ++.|+.|++++|.+.+. ..+..|+.
T Consensus 318 ---~~L~~L~L~~N~l~~l---~l~~l~~L~~L~l~~N~l~~--------l~~L~~L~l~~n~l~g~-----~~~~~l~~ 378 (457)
T 3bz5_A 318 ---PKLVYLYLNNTELTEL---DVSHNTKLKSLSCVNAHIQD--------FSSVGKIPALNNNFEAE-----GQTITMPK 378 (457)
T ss_dssp ---TTCCEEECTTCCCSCC---CCTTCTTCSEEECCSSCCCB--------CTTGGGSSGGGTSEEEE-----EEEEECCC
T ss_pred ---ccCCEEECCCCccccc---ccccCCcCcEEECCCCCCCC--------ccccccccccCCcEEec-----ceeeecCc
Confidence 3688999999999974 38889999999999999985 24566778999998865 35567888
Q ss_pred EeccCCcCeecCCCC
Q 005038 614 FSVAYNNLSGEIPEW 628 (717)
Q Consensus 614 L~l~~N~l~~~~p~~ 628 (717)
+++++|+++|.+|..
T Consensus 379 l~l~~N~l~g~ip~~ 393 (457)
T 3bz5_A 379 ETLTNNSLTIAVSPD 393 (457)
T ss_dssp BCCBTTBEEEECCTT
T ss_pred cccccCcEEEEcChh
Confidence 999999999999874
No 34
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=100.00 E-value=6.2e-35 Score=307.16 Aligned_cols=335 Identities=22% Similarity=0.213 Sum_probs=248.9
Q ss_pred CCCCCEEEccCCccccccchhhhhCCCCCCEEEccCcccCccCcccccCCCCCCeEECcCCcCcccCcccccCCCCCCEE
Q 005038 242 MKFLQILDLSNNHLTGEIPEHLAVGCVNLQFLALSNNNLQGHLFSRNFNLTNLQWLQLEGNRFVGEIPQSLSKCSSLEGL 321 (717)
Q Consensus 242 l~~L~~L~Ls~n~l~~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L 321 (717)
++++++|++++|.++ .+|..++..+++|++|++++|.+.+..+..|..+++|++|++++|.+.+..|..+..+++|++|
T Consensus 44 l~~l~~l~l~~~~l~-~l~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L 122 (390)
T 3o6n_A 44 LNNQKIVTFKNSTMR-KLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVL 122 (390)
T ss_dssp GCCCSEEEEESCEES-EECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEE
T ss_pred cCCceEEEecCCchh-hCChhHhcccccCcEEECCCCcccccChhhccCCCCcCEEECCCCCCCcCCHHHhcCCCCCCEE
Confidence 467778888888777 6777766667888888888888877766777788888888888888877777777788888888
Q ss_pred EccCCcCcCcCCcccCCCCCCCEEEccCCcccCCcccccCCCCCCCEEEccCCcCcccCCCccccccccEEeccCccccc
Q 005038 322 YLNNNSLLGKIPRWLGNLTRLQYIIMPNNHLEGPIPVEFCQLDSLQILDISDNNISGSLPSCFHPLSIKQVHLSKNMLHG 401 (717)
Q Consensus 322 ~L~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~L~~L~l~~n~~~~ 401 (717)
++++|.+.+..+..|..+++|++|++++|.+.+..+..+..+++|++|++++|.+.+.. ....++|+.+++++|.+.+
T Consensus 123 ~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~--~~~l~~L~~L~l~~n~l~~ 200 (390)
T 3o6n_A 123 VLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHVD--LSLIPSLFHANVSYNLLST 200 (390)
T ss_dssp ECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTSSCTTCCEEECCSSCCSBCC--GGGCTTCSEEECCSSCCSE
T ss_pred ECCCCccCcCCHHHhcCCCCCcEEECCCCccCccChhhccCCCCCCEEECCCCcCCccc--cccccccceeecccccccc
Confidence 88888877544445677788888888888887777777778888888888888776542 2335677777777776643
Q ss_pred ccCccccCCCCcCCEEeCCCCcCCcccchhhhCCCCCcEEEcCCCccccccchhccCCCCCCEEEccCCcCccCCCcccc
Q 005038 402 QLKRGTFFNCSSLVTLDLSYNRLNGSIPDWVDGLSQLSHLILGHNNLEGEVSVQLCELNQLQLLDLSNNNLHGPIPPCFD 481 (717)
Q Consensus 402 ~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~ 481 (717)
+...++|++|++++|.+... +. ...++|+.|++++|++++. ..+..+++|+.|++++|.+.+..|..+.
T Consensus 201 ------~~~~~~L~~L~l~~n~l~~~-~~--~~~~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~Ls~n~l~~~~~~~~~ 269 (390)
T 3o6n_A 201 ------LAIPIAVEELDASHNSINVV-RG--PVNVELTILKLQHNNLTDT--AWLLNYPGLVEVDLSYNELEKIMYHPFV 269 (390)
T ss_dssp ------EECCSSCSEEECCSSCCCEE-EC--CCCSSCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCEEESGGGT
T ss_pred ------cCCCCcceEEECCCCeeeec-cc--cccccccEEECCCCCCccc--HHHcCCCCccEEECCCCcCCCcChhHcc
Confidence 33346788888888888754 32 2347888888888888754 4677888888888888888776666555
Q ss_pred cccccccccCCCCCCcchhhhhhcccccccccccccceEEEeeccceeeeccccccccceeeCCCCccCCCCcccccCCc
Q 005038 482 NTTLHESYSNSSSPDEQFEIFFSIEGHQGFLEKQNHEIFEFTTKNIAYIYQGKVLSLLSGLDLSCNKLIGHIPPQIGNLT 561 (717)
Q Consensus 482 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~ 561 (717)
.++ +|+.|++++|++++ +|..+..++
T Consensus 270 ~l~-----------------------------------------------------~L~~L~L~~n~l~~-~~~~~~~l~ 295 (390)
T 3o6n_A 270 KMQ-----------------------------------------------------RLERLYISNNRLVA-LNLYGQPIP 295 (390)
T ss_dssp TCS-----------------------------------------------------SCCEEECCSSCCCE-EECSSSCCT
T ss_pred ccc-----------------------------------------------------cCCEEECCCCcCcc-cCcccCCCC
Confidence 433 68888888888874 466667788
Q ss_pred cCCeEeCCCcccCCCCCcCCCCCCCCCEEECCCCcCCccCchhhcCCCCCCEEeccCCcCeecCCCCCcccCCCCccccc
Q 005038 562 RIQTLNLSHNNLTGSIPSTFSNLKHVESLDLSNNKLNGKIPHQLVELKTLEVFSVAYNNLSGEIPEWKAQFATFNESSYE 641 (717)
Q Consensus 562 ~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~N~i~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~~~~l~~~~~~ 641 (717)
+|++|++++|+++ .+|..+..+++|++|++++|+++.. | +..+++|+.|++++|++.+.... .-+..+....+.
T Consensus 296 ~L~~L~L~~n~l~-~~~~~~~~l~~L~~L~L~~N~i~~~-~--~~~~~~L~~L~l~~N~~~~~~~~--~~~~~~~~~~~~ 369 (390)
T 3o6n_A 296 TLKVLDLSHNHLL-HVERNQPQFDRLENLYLDHNSIVTL-K--LSTHHTLKNLTLSHNDWDCNSLR--ALFRNVARPAVD 369 (390)
T ss_dssp TCCEEECCSSCCC-CCGGGHHHHTTCSEEECCSSCCCCC-C--CCTTCCCSEEECCSSCEEHHHHH--HHTTTCCTTTBC
T ss_pred CCCEEECCCCcce-ecCccccccCcCCEEECCCCcccee-C--chhhccCCEEEcCCCCccchhHH--HHHHHHHhhccc
Confidence 9999999999888 5666778888999999999998754 3 66788899999999999875432 233455556677
Q ss_pred CCcCCCCCC
Q 005038 642 GNTFLCGLP 650 (717)
Q Consensus 642 ~n~~~c~~~ 650 (717)
+++..|.++
T Consensus 370 ~~~~~c~~~ 378 (390)
T 3o6n_A 370 DADQHCKID 378 (390)
T ss_dssp CCCSCCCTT
T ss_pred ccCceeccc
Confidence 777777754
No 35
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=100.00 E-value=2.4e-34 Score=306.71 Aligned_cols=360 Identities=20% Similarity=0.205 Sum_probs=243.0
Q ss_pred cccCCCCCCeeeCCCCCCCCCcchhccCCCCCCEEeCCCCCCcccCCccccCCCCCCCEEECCCCcccCcCCcccccCCC
Q 005038 14 GLCSLVHLQELYIASNDLRGSLPWCMANMTSLRILDVSSNQLTGSISSSPLVHLTSIEELMLSNNYFQIPISLEPLFNYS 93 (717)
Q Consensus 14 ~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~i~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~ 93 (717)
+++++++|++|++++|.+++. | .+..+++|++|++++|.++ .++ +..+++|++|++++|.+++. .+++++
T Consensus 37 ~~~~l~~L~~L~Ls~n~l~~~-~-~l~~l~~L~~L~Ls~n~l~-~~~---~~~l~~L~~L~Ls~N~l~~~----~~~~l~ 106 (457)
T 3bz5_A 37 SEEQLATLTSLDCHNSSITDM-T-GIEKLTGLTKLICTSNNIT-TLD---LSQNTNLTYLACDSNKLTNL----DVTPLT 106 (457)
T ss_dssp EHHHHTTCCEEECCSSCCCCC-T-TGGGCTTCSEEECCSSCCS-CCC---CTTCTTCSEEECCSSCCSCC----CCTTCT
T ss_pred ChhHcCCCCEEEccCCCcccC-h-hhcccCCCCEEEccCCcCC-eEc---cccCCCCCEEECcCCCCcee----ecCCCC
Confidence 577788888888888888854 4 6788888888888888887 343 77788888888888887752 267778
Q ss_pred CCCEEEccCCcccccccccccccCCCccccEEEccCCCCCCCCCchhhcCCCCCCEEEccCCCCcccCChhhhhCCCCCC
Q 005038 94 RLKIFNAENNEIKAEITESHSLIAPKFQLNTLSLSSNYGDGFIFPKFLYHQHDLEYVDLSHIKMNGEFPNWLLENNTKLE 173 (717)
Q Consensus 94 ~L~~L~l~~n~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~ 173 (717)
+|++|++++|.+++. + +..+++|++|++++|.+++ ++ +..+++|+
T Consensus 107 ~L~~L~L~~N~l~~l-----------------------------~--~~~l~~L~~L~l~~N~l~~-l~---l~~l~~L~ 151 (457)
T 3bz5_A 107 KLTYLNCDTNKLTKL-----------------------------D--VSQNPLLTYLNCARNTLTE-ID---VSHNTQLT 151 (457)
T ss_dssp TCCEEECCSSCCSCC-----------------------------C--CTTCTTCCEEECTTSCCSC-CC---CTTCTTCC
T ss_pred cCCEEECCCCcCCee-----------------------------c--CCCCCcCCEEECCCCccce-ec---cccCCcCC
Confidence 888888888776531 1 3344566666666666653 22 24566666
Q ss_pred EEEccCCcCcccCccCcCCCCCcCEEEccCCcCCccCCccccccCCCCcEEECCCCCCCccCCccccCCCCCCEEEccCC
Q 005038 174 TLFLVNDSLAGPFRLPIHSHKRLRQLDVSNNNIRGHIPVKIGDVLPSLYVFNNSMNALDGSIPSSFGNMKFLQILDLSNN 253 (717)
Q Consensus 174 ~L~l~~n~~~~~~~~~~~~~~~L~~L~ls~n~i~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~Ls~n 253 (717)
+|++++|...+.+ .+..+++|++|++++|.+++ ++ ...+++|+.|++++|.+++. .+..+++|++|++++|
T Consensus 152 ~L~l~~n~~~~~~--~~~~l~~L~~L~ls~n~l~~-l~---l~~l~~L~~L~l~~N~l~~~---~l~~l~~L~~L~Ls~N 222 (457)
T 3bz5_A 152 ELDCHLNKKITKL--DVTPQTQLTTLDCSFNKITE-LD---VSQNKLLNRLNCDTNNITKL---DLNQNIQLTFLDCSSN 222 (457)
T ss_dssp EEECTTCSCCCCC--CCTTCTTCCEEECCSSCCCC-CC---CTTCTTCCEEECCSSCCSCC---CCTTCTTCSEEECCSS
T ss_pred EEECCCCCccccc--ccccCCcCCEEECCCCccce-ec---cccCCCCCEEECcCCcCCee---ccccCCCCCEEECcCC
Confidence 6666666444333 35566677777777777663 33 23356677777777766653 2666777777777777
Q ss_pred ccccccchhhhhCCCCCCEEEccCcccCccCcccccCCCCCCeEECcCCcCcccCcccccCCCCCCEEEccCCcCcCcCC
Q 005038 254 HLTGEIPEHLAVGCVNLQFLALSNNNLQGHLFSRNFNLTNLQWLQLEGNRFVGEIPQSLSKCSSLEGLYLNNNSLLGKIP 333 (717)
Q Consensus 254 ~l~~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~ 333 (717)
+++ .+| +..+++|++|++++|.+++.. +..+++|+.|++++| +|+.|++++|...+.+|
T Consensus 223 ~l~-~ip---~~~l~~L~~L~l~~N~l~~~~---~~~l~~L~~L~l~~n--------------~L~~L~l~~n~~~~~~~ 281 (457)
T 3bz5_A 223 KLT-EID---VTPLTQLTYFDCSVNPLTELD---VSTLSKLTTLHCIQT--------------DLLEIDLTHNTQLIYFQ 281 (457)
T ss_dssp CCS-CCC---CTTCTTCSEEECCSSCCSCCC---CTTCTTCCEEECTTC--------------CCSCCCCTTCTTCCEEE
T ss_pred ccc-ccC---ccccCCCCEEEeeCCcCCCcC---HHHCCCCCEEeccCC--------------CCCEEECCCCccCCccc
Confidence 776 355 335677777777777776543 345566777666554 34556666666555544
Q ss_pred cccCCCCCCCEEEccCCcccCCcccccCCCCCCCEEEccCCcCcccCCCccccccccEEeccCcccccccCccccCCCCc
Q 005038 334 RWLGNLTRLQYIIMPNNHLEGPIPVEFCQLDSLQILDISDNNISGSLPSCFHPLSIKQVHLSKNMLHGQLKRGTFFNCSS 413 (717)
Q Consensus 334 ~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~ 413 (717)
+..+++|+.|++++|...+.+|. ..+.|+.+++++| ++|+.|++++|.+.+ ++ +..+++
T Consensus 282 --~~~l~~L~~L~Ls~n~~l~~l~~---~~~~L~~L~l~~~------------~~L~~L~L~~N~l~~-l~---l~~l~~ 340 (457)
T 3bz5_A 282 --AEGCRKIKELDVTHNTQLYLLDC---QAAGITELDLSQN------------PKLVYLYLNNTELTE-LD---VSHNTK 340 (457)
T ss_dssp --CTTCTTCCCCCCTTCTTCCEEEC---TTCCCSCCCCTTC------------TTCCEEECTTCCCSC-CC---CTTCTT
T ss_pred --ccccccCCEEECCCCcccceecc---CCCcceEechhhc------------ccCCEEECCCCcccc-cc---cccCCc
Confidence 35567777777777766555553 3345566656554 367777777777765 32 778899
Q ss_pred CCEEeCCCCcCCcccchhhhCCCCCcEEEcCCCccccccchhccCCCCCCEEEccCCcCccCCCccccc
Q 005038 414 LVTLDLSYNRLNGSIPDWVDGLSQLSHLILGHNNLEGEVSVQLCELNQLQLLDLSNNNLHGPIPPCFDN 482 (717)
Q Consensus 414 L~~L~L~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~ 482 (717)
|+.|++++|++++ ++.|+.|++++|.+.+. ..+..|..+++++|+++|.+|..+..
T Consensus 341 L~~L~l~~N~l~~--------l~~L~~L~l~~n~l~g~-----~~~~~l~~l~l~~N~l~g~ip~~~~~ 396 (457)
T 3bz5_A 341 LKSLSCVNAHIQD--------FSSVGKIPALNNNFEAE-----GQTITMPKETLTNNSLTIAVSPDLLD 396 (457)
T ss_dssp CSEEECCSSCCCB--------CTTGGGSSGGGTSEEEE-----EEEEECCCBCCBTTBEEEECCTTCBC
T ss_pred CcEEECCCCCCCC--------ccccccccccCCcEEec-----ceeeecCccccccCcEEEEcChhHhc
Confidence 9999999998875 35667778888888865 24556788899999999988876544
No 36
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=100.00 E-value=5.2e-34 Score=316.48 Aligned_cols=335 Identities=23% Similarity=0.218 Sum_probs=253.8
Q ss_pred CCCCCEEEccCCccccccchhhhhCCCCCCEEEccCcccCccCcccccCCCCCCeEECcCCcCcccCcccccCCCCCCEE
Q 005038 242 MKFLQILDLSNNHLTGEIPEHLAVGCVNLQFLALSNNNLQGHLFSRNFNLTNLQWLQLEGNRFVGEIPQSLSKCSSLEGL 321 (717)
Q Consensus 242 l~~L~~L~Ls~n~l~~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L 321 (717)
+.+++.+++++|.+. .+|..++..+++|++|++++|.+.+..+..|..+++|++|+|++|.+.+..|..|..+++|++|
T Consensus 50 l~~l~~l~l~~~~l~-~lp~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L 128 (597)
T 3oja_B 50 LNNQKIVTFKNSTMR-KLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVL 128 (597)
T ss_dssp GCCCSEEEESSCEES-EECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEE
T ss_pred CCCceEEEeeCCCCC-CcCHHHHccCCCCcEEECCCCCCCCCChHHhcCCCCCCEEECCCCcCCCCCHHHHcCCCCCCEE
Confidence 456777777777776 6676666667777777777777777666777777777777777777777766777777777777
Q ss_pred EccCCcCcCcCCcccCCCCCCCEEEccCCcccCCcccccCCCCCCCEEEccCCcCcccCCCccccccccEEeccCccccc
Q 005038 322 YLNNNSLLGKIPRWLGNLTRLQYIIMPNNHLEGPIPVEFCQLDSLQILDISDNNISGSLPSCFHPLSIKQVHLSKNMLHG 401 (717)
Q Consensus 322 ~L~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~L~~L~l~~n~~~~ 401 (717)
++++|.+.+..+..|..+++|+.|++++|.+.+..|..|..+++|++|++++|.+.+.. ...+++|+.+++++|.+.+
T Consensus 129 ~L~~n~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~--~~~l~~L~~L~l~~n~l~~ 206 (597)
T 3oja_B 129 VLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHVD--LSLIPSLFHANVSYNLLST 206 (597)
T ss_dssp ECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECTTSCCSBCC--GGGCTTCSEEECCSSCCSE
T ss_pred EeeCCCCCCCCHHHhccCCCCCEEEeeCCcCCCCChhhhhcCCcCcEEECcCCCCCCcC--hhhhhhhhhhhcccCcccc
Confidence 77777777555555677777788888777777777777777777888888777776542 2235677777777776643
Q ss_pred ccCccccCCCCcCCEEeCCCCcCCcccchhhhCCCCCcEEEcCCCccccccchhccCCCCCCEEEccCCcCccCCCcccc
Q 005038 402 QLKRGTFFNCSSLVTLDLSYNRLNGSIPDWVDGLSQLSHLILGHNNLEGEVSVQLCELNQLQLLDLSNNNLHGPIPPCFD 481 (717)
Q Consensus 402 ~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~ 481 (717)
+...++|++|++++|.+....+. + .++|+.|++++|.+++ +..+..+++|+.|++++|.+.+..|..|.
T Consensus 207 ------l~~~~~L~~L~ls~n~l~~~~~~-~--~~~L~~L~L~~n~l~~--~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~ 275 (597)
T 3oja_B 207 ------LAIPIAVEELDASHNSINVVRGP-V--NVELTILKLQHNNLTD--TAWLLNYPGLVEVDLSYNELEKIMYHPFV 275 (597)
T ss_dssp ------EECCTTCSEEECCSSCCCEEECS-C--CSCCCEEECCSSCCCC--CGGGGGCTTCSEEECCSSCCCEEESGGGT
T ss_pred ------ccCCchhheeeccCCcccccccc-c--CCCCCEEECCCCCCCC--ChhhccCCCCCEEECCCCccCCCCHHHhc
Confidence 33456788899998888754332 2 3688999999998885 35678888999999999988877776665
Q ss_pred cccccccccCCCCCCcchhhhhhcccccccccccccceEEEeeccceeeeccccccccceeeCCCCccCCCCcccccCCc
Q 005038 482 NTTLHESYSNSSSPDEQFEIFFSIEGHQGFLEKQNHEIFEFTTKNIAYIYQGKVLSLLSGLDLSCNKLIGHIPPQIGNLT 561 (717)
Q Consensus 482 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~ 561 (717)
.++ +|+.|+|++|.+++ +|..+..++
T Consensus 276 ~l~-----------------------------------------------------~L~~L~Ls~N~l~~-l~~~~~~l~ 301 (597)
T 3oja_B 276 KMQ-----------------------------------------------------RLERLYISNNRLVA-LNLYGQPIP 301 (597)
T ss_dssp TCS-----------------------------------------------------SCCEEECTTSCCCE-EECSSSCCT
T ss_pred Ccc-----------------------------------------------------CCCEEECCCCCCCC-CCcccccCC
Confidence 543 78899999998885 566777889
Q ss_pred cCCeEeCCCcccCCCCCcCCCCCCCCCEEECCCCcCCccCchhhcCCCCCCEEeccCCcCeecCCCCCcccCCCCccccc
Q 005038 562 RIQTLNLSHNNLTGSIPSTFSNLKHVESLDLSNNKLNGKIPHQLVELKTLEVFSVAYNNLSGEIPEWKAQFATFNESSYE 641 (717)
Q Consensus 562 ~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~N~i~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~~~~l~~~~~~ 641 (717)
+|++|+|++|.++ .+|..+..+++|++|+|++|++++. | +..+++|+.|++++|++.|..+. ..+..+....+.
T Consensus 302 ~L~~L~Ls~N~l~-~i~~~~~~l~~L~~L~L~~N~l~~~-~--~~~~~~L~~L~l~~N~~~~~~~~--~~~~~~~~~~~~ 375 (597)
T 3oja_B 302 TLKVLDLSHNHLL-HVERNQPQFDRLENLYLDHNSIVTL-K--LSTHHTLKNLTLSHNDWDCNSLR--ALFRNVARPAVD 375 (597)
T ss_dssp TCCEEECCSSCCC-CCGGGHHHHTTCSEEECCSSCCCCC-C--CCTTCCCSEEECCSSCEEHHHHH--HHTTTCCTTTBC
T ss_pred CCcEEECCCCCCC-ccCcccccCCCCCEEECCCCCCCCc-C--hhhcCCCCEEEeeCCCCCChhHH--HHHHHHhhhccc
Confidence 9999999999999 6777888899999999999999854 3 66788999999999999976433 234556666778
Q ss_pred CCcCCCCCC
Q 005038 642 GNTFLCGLP 650 (717)
Q Consensus 642 ~n~~~c~~~ 650 (717)
+++..|+.+
T Consensus 376 ~~~~~C~~~ 384 (597)
T 3oja_B 376 DADQHCKID 384 (597)
T ss_dssp CCCCCCCTT
T ss_pred cccccCCcc
Confidence 888888764
No 37
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=100.00 E-value=1.4e-33 Score=286.22 Aligned_cols=260 Identities=35% Similarity=0.582 Sum_probs=210.4
Q ss_pred CCCCEEEccCCcCcC--cCCcccCCCCCCCEEEccC-CcccCCcccccCCCCCCCEEEccCCcCcccCCCccccccccEE
Q 005038 316 SSLEGLYLNNNSLLG--KIPRWLGNLTRLQYIIMPN-NHLEGPIPVEFCQLDSLQILDISDNNISGSLPSCFHPLSIKQV 392 (717)
Q Consensus 316 ~~L~~L~L~~n~~~~--~~~~~~~~l~~L~~L~l~~-n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~L~~L 392 (717)
.+++.|++++|.+.+ .+|..+..+++|++|++++ |.+.+.+|..+..+++|++|++++|.+.+..|
T Consensus 50 ~~l~~L~L~~~~l~~~~~~~~~l~~l~~L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p----------- 118 (313)
T 1ogq_A 50 YRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIP----------- 118 (313)
T ss_dssp CCEEEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECC-----------
T ss_pred ceEEEEECCCCCccCCcccChhHhCCCCCCeeeCCCCCcccccCChhHhcCCCCCEEECcCCeeCCcCC-----------
Confidence 356666666666665 5666666667777777763 66666666667777777777777766653322
Q ss_pred eccCcccccccCccccCCCCcCCEEeCCCCcCCcccchhhhCCCCCcEEEcCCCccccccchhccCCC-CCCEEEccCCc
Q 005038 393 HLSKNMLHGQLKRGTFFNCSSLVTLDLSYNRLNGSIPDWVDGLSQLSHLILGHNNLEGEVSVQLCELN-QLQLLDLSNNN 471 (717)
Q Consensus 393 ~l~~n~~~~~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~-~L~~L~L~~n~ 471 (717)
.. |..+++|++|++++|.+.+..|..+..+++|++|++++|++++..|..+..++ +|+.|++++|.
T Consensus 119 ------------~~-~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~~L~~L~L~~N~ 185 (313)
T 1ogq_A 119 ------------DF-LSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNR 185 (313)
T ss_dssp ------------GG-GGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSE
T ss_pred ------------HH-HhCCCCCCEEeCCCCccCCcCChHHhcCCCCCeEECcCCcccCcCCHHHhhhhhcCcEEECcCCe
Confidence 22 56677788888888888777788888888888888888888877888888887 88888888888
Q ss_pred CccCCCcccccccccccccCCCCCCcchhhhhhcccccccccccccceEEEeeccceeeeccccccccceeeCCCCccCC
Q 005038 472 LHGPIPPCFDNTTLHESYSNSSSPDEQFEIFFSIEGHQGFLEKQNHEIFEFTTKNIAYIYQGKVLSLLSGLDLSCNKLIG 551 (717)
Q Consensus 472 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~ 551 (717)
+++..|..+... .|+.|++++|++++
T Consensus 186 l~~~~~~~~~~l------------------------------------------------------~L~~L~Ls~N~l~~ 211 (313)
T 1ogq_A 186 LTGKIPPTFANL------------------------------------------------------NLAFVDLSRNMLEG 211 (313)
T ss_dssp EEEECCGGGGGC------------------------------------------------------CCSEEECCSSEEEE
T ss_pred eeccCChHHhCC------------------------------------------------------cccEEECcCCcccC
Confidence 887777665442 28889999999988
Q ss_pred CCcccccCCccCCeEeCCCcccCCCCCcCCCCCCCCCEEECCCCcCCccCchhhcCCCCCCEEeccCCcCeecCCCCCcc
Q 005038 552 HIPPQIGNLTRIQTLNLSHNNLTGSIPSTFSNLKHVESLDLSNNKLNGKIPHQLVELKTLEVFSVAYNNLSGEIPEWKAQ 631 (717)
Q Consensus 552 ~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~N~i~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~ 631 (717)
..|..+..+++|++|+|++|++++..|. +..+++|++|++++|++++.+|..+..+++|++|++++|++++.+|.. ..
T Consensus 212 ~~~~~~~~l~~L~~L~L~~N~l~~~~~~-~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~-~~ 289 (313)
T 1ogq_A 212 DASVLFGSDKNTQKIHLAKNSLAFDLGK-VGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQG-GN 289 (313)
T ss_dssp CCGGGCCTTSCCSEEECCSSEECCBGGG-CCCCTTCCEEECCSSCCEECCCGGGGGCTTCCEEECCSSEEEEECCCS-TT
T ss_pred cCCHHHhcCCCCCEEECCCCceeeecCc-ccccCCCCEEECcCCcccCcCChHHhcCcCCCEEECcCCcccccCCCC-cc
Confidence 8899999999999999999999976665 888999999999999999999999999999999999999999999997 78
Q ss_pred cCCCCcccccCCcCCCCCCCCCCC
Q 005038 632 FATFNESSYEGNTFLCGLPLPICR 655 (717)
Q Consensus 632 ~~~l~~~~~~~n~~~c~~~l~~C~ 655 (717)
+.+++.+.+.+||++|+.|++.|.
T Consensus 290 l~~L~~l~l~~N~~lc~~p~~~C~ 313 (313)
T 1ogq_A 290 LQRFDVSAYANNKCLCGSPLPACT 313 (313)
T ss_dssp GGGSCGGGTCSSSEEESTTSSCCC
T ss_pred ccccChHHhcCCCCccCCCCCCCC
Confidence 999999999999999999887773
No 38
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=100.00 E-value=3.3e-32 Score=281.79 Aligned_cols=304 Identities=23% Similarity=0.336 Sum_probs=201.0
Q ss_pred CCCCcEEECCCCCCCccCCccccCCCCCCEEEccCCccccccchhhhhCCCCCCEEEccCcccCccCcccccCCCCCCeE
Q 005038 218 LPSLYVFNNSMNALDGSIPSSFGNMKFLQILDLSNNHLTGEIPEHLAVGCVNLQFLALSNNNLQGHLFSRNFNLTNLQWL 297 (717)
Q Consensus 218 l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L 297 (717)
++++++|+++++.+.. ++ .+..+++|++|++++|.++ .++. +..+++|++|++++|.++.. ..+..+++|++|
T Consensus 43 l~~L~~L~l~~~~i~~-~~-~~~~~~~L~~L~l~~n~i~-~~~~--~~~l~~L~~L~L~~n~i~~~--~~~~~l~~L~~L 115 (347)
T 4fmz_A 43 LESITKLVVAGEKVAS-IQ-GIEYLTNLEYLNLNGNQIT-DISP--LSNLVKLTNLYIGTNKITDI--SALQNLTNLREL 115 (347)
T ss_dssp HTTCSEEECCSSCCCC-CT-TGGGCTTCCEEECCSSCCC-CCGG--GTTCTTCCEEECCSSCCCCC--GGGTTCTTCSEE
T ss_pred cccccEEEEeCCcccc-ch-hhhhcCCccEEEccCCccc-cchh--hhcCCcCCEEEccCCcccCc--hHHcCCCcCCEE
Confidence 5667777777776653 23 2666677777777777666 4444 34566777777777766542 346666667777
Q ss_pred ECcCCcCcccCcccccCCCCCCEEEccCCcCcCcCCcccCCCCCCCEEEccCCcccCCcccccCCCCCCCEEEccCCcCc
Q 005038 298 QLEGNRFVGEIPQSLSKCSSLEGLYLNNNSLLGKIPRWLGNLTRLQYIIMPNNHLEGPIPVEFCQLDSLQILDISDNNIS 377 (717)
Q Consensus 298 ~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~ 377 (717)
++++|.+.+.. . +..+++|++|++++|...... ..+..+++|+.|++++|.+.+..+ +..+++|++|++++|.+.
T Consensus 116 ~l~~n~i~~~~-~-~~~l~~L~~L~l~~n~~~~~~-~~~~~l~~L~~L~l~~~~~~~~~~--~~~l~~L~~L~l~~n~l~ 190 (347)
T 4fmz_A 116 YLNEDNISDIS-P-LANLTKMYSLNLGANHNLSDL-SPLSNMTGLNYLTVTESKVKDVTP--IANLTDLYSLSLNYNQIE 190 (347)
T ss_dssp ECTTSCCCCCG-G-GTTCTTCCEEECTTCTTCCCC-GGGTTCTTCCEEECCSSCCCCCGG--GGGCTTCSEEECTTSCCC
T ss_pred ECcCCcccCch-h-hccCCceeEEECCCCCCcccc-cchhhCCCCcEEEecCCCcCCchh--hccCCCCCEEEccCCccc
Confidence 77766666432 2 566666666666666444322 235666666666666666654332 555666666666666554
Q ss_pred ccCCCccccccccEEeccCcccccccCccccCCCCcCCEEeCCCCcCCcccchhhhCCCCCcEEEcCCCccccccchhcc
Q 005038 378 GSLPSCFHPLSIKQVHLSKNMLHGQLKRGTFFNCSSLVTLDLSYNRLNGSIPDWVDGLSQLSHLILGHNNLEGEVSVQLC 457 (717)
Q Consensus 378 ~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~ 457 (717)
+ ++. +..+++|++|++++|.+.+..+ +..+++|++|++++|++++..+ +.
T Consensus 191 ~------------------------~~~--~~~l~~L~~L~l~~n~l~~~~~--~~~~~~L~~L~l~~n~l~~~~~--~~ 240 (347)
T 4fmz_A 191 D------------------------ISP--LASLTSLHYFTAYVNQITDITP--VANMTRLNSLKIGNNKITDLSP--LA 240 (347)
T ss_dssp C------------------------CGG--GGGCTTCCEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCCCGG--GT
T ss_pred c------------------------ccc--ccCCCccceeecccCCCCCCch--hhcCCcCCEEEccCCccCCCcc--hh
Confidence 2 111 5566778888888887775443 6777888888888888875544 77
Q ss_pred CCCCCCEEEccCCcCccCCCcccccccccccccCCCCCCcchhhhhhcccccccccccccceEEEeeccceeeecccccc
Q 005038 458 ELNQLQLLDLSNNNLHGPIPPCFDNTTLHESYSNSSSPDEQFEIFFSIEGHQGFLEKQNHEIFEFTTKNIAYIYQGKVLS 537 (717)
Q Consensus 458 ~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 537 (717)
.+++|++|++++|.+++. ..+. .++
T Consensus 241 ~l~~L~~L~l~~n~l~~~--~~~~-----------------------------------------------------~l~ 265 (347)
T 4fmz_A 241 NLSQLTWLEIGTNQISDI--NAVK-----------------------------------------------------DLT 265 (347)
T ss_dssp TCTTCCEEECCSSCCCCC--GGGT-----------------------------------------------------TCT
T ss_pred cCCCCCEEECCCCccCCC--hhHh-----------------------------------------------------cCC
Confidence 788888888888877642 1111 134
Q ss_pred ccceeeCCCCccCCCCcccccCCccCCeEeCCCcccCCCCCcCCCCCCCCCEEECCCCcCCccCchhhcCCCCCCEEecc
Q 005038 538 LLSGLDLSCNKLIGHIPPQIGNLTRIQTLNLSHNNLTGSIPSTFSNLKHVESLDLSNNKLNGKIPHQLVELKTLEVFSVA 617 (717)
Q Consensus 538 ~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~N~i~~~~p~~~~~l~~L~~L~l~ 617 (717)
+|+.|++++|++++. ..+..+++|++|++++|++++..|..++.+++|++|++++|++++..| +..+++|+.|+++
T Consensus 266 ~L~~L~l~~n~l~~~--~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~l~ 341 (347)
T 4fmz_A 266 KLKMLNVGSNQISDI--SVLNNLSQLNSLFLNNNQLGNEDMEVIGGLTNLTTLFLSQNHITDIRP--LASLSKMDSADFA 341 (347)
T ss_dssp TCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCGGGHHHHHTCTTCSEEECCSSSCCCCGG--GGGCTTCSEESSS
T ss_pred CcCEEEccCCccCCC--hhhcCCCCCCEEECcCCcCCCcChhHhhccccCCEEEccCCccccccC--hhhhhccceeehh
Confidence 688888888887754 357778888888888888887777778888888888888888876555 7778888888888
Q ss_pred CCcCe
Q 005038 618 YNNLS 622 (717)
Q Consensus 618 ~N~l~ 622 (717)
+|+++
T Consensus 342 ~N~i~ 346 (347)
T 4fmz_A 342 NQVIK 346 (347)
T ss_dssp CC---
T ss_pred hhccc
Confidence 88775
No 39
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=100.00 E-value=1.6e-32 Score=288.72 Aligned_cols=312 Identities=20% Similarity=0.223 Sum_probs=269.3
Q ss_pred CCCCCEEEccCcccCccCcccccCCCCCCeEECcCCcCcccCcccccCCCCCCEEEccCCcCcCcCCcccCCCCCCCEEE
Q 005038 267 CVNLQFLALSNNNLQGHLFSRNFNLTNLQWLQLEGNRFVGEIPQSLSKCSSLEGLYLNNNSLLGKIPRWLGNLTRLQYII 346 (717)
Q Consensus 267 ~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~ 346 (717)
+++++.|+++++.++...+..+..+++|++|++++|.+.+..+..|..+++|++|++++|.+.+..|..|..+++|+.|+
T Consensus 44 l~~l~~l~l~~~~l~~l~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ 123 (390)
T 3o6n_A 44 LNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLV 123 (390)
T ss_dssp GCCCSEEEEESCEESEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEE
T ss_pred cCCceEEEecCCchhhCChhHhcccccCcEEECCCCcccccChhhccCCCCcCEEECCCCCCCcCCHHHhcCCCCCCEEE
Confidence 68999999999999977666688999999999999999988888999999999999999999988888899999999999
Q ss_pred ccCCcccCCcccccCCCCCCCEEEccCCcCcccCCCccc-cccccEEeccCcccccccCccccCCCCcCCEEeCCCCcCC
Q 005038 347 MPNNHLEGPIPVEFCQLDSLQILDISDNNISGSLPSCFH-PLSIKQVHLSKNMLHGQLKRGTFFNCSSLVTLDLSYNRLN 425 (717)
Q Consensus 347 l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~-~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~L~~n~~~ 425 (717)
+++|.++...+..|..+++|++|++++|.+.+..+..+. .++|+.|++++|.+.+. + +..+++|++|++++|.+.
T Consensus 124 L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~-~---~~~l~~L~~L~l~~n~l~ 199 (390)
T 3o6n_A 124 LERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHV-D---LSLIPSLFHANVSYNLLS 199 (390)
T ss_dssp CCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTSSCTTCCEEECCSSCCSBC-C---GGGCTTCSEEECCSSCCS
T ss_pred CCCCccCcCCHHHhcCCCCCcEEECCCCccCccChhhccCCCCCCEEECCCCcCCcc-c---cccccccceeeccccccc
Confidence 999999976666689999999999999999987776554 78999999999998653 2 556789999999999887
Q ss_pred cccchhhhCCCCCcEEEcCCCccccccchhccCCCCCCEEEccCCcCccCCCcccccccccccccCCCCCCcchhhhhhc
Q 005038 426 GSIPDWVDGLSQLSHLILGHNNLEGEVSVQLCELNQLQLLDLSNNNLHGPIPPCFDNTTLHESYSNSSSPDEQFEIFFSI 505 (717)
Q Consensus 426 ~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 505 (717)
+ +...++|+.|++++|.+..... ...++|+.|++++|.+++. ..+.
T Consensus 200 ~-----~~~~~~L~~L~l~~n~l~~~~~---~~~~~L~~L~l~~n~l~~~--~~l~------------------------ 245 (390)
T 3o6n_A 200 T-----LAIPIAVEELDASHNSINVVRG---PVNVELTILKLQHNNLTDT--AWLL------------------------ 245 (390)
T ss_dssp E-----EECCSSCSEEECCSSCCCEEEC---CCCSSCCEEECCSSCCCCC--GGGG------------------------
T ss_pred c-----cCCCCcceEEECCCCeeeeccc---cccccccEEECCCCCCccc--HHHc------------------------
Confidence 4 2345789999999999986533 2357999999999998753 2222
Q ss_pred ccccccccccccceEEEeeccceeeeccccccccceeeCCCCccCCCCcccccCCccCCeEeCCCcccCCCCCcCCCCCC
Q 005038 506 EGHQGFLEKQNHEIFEFTTKNIAYIYQGKVLSLLSGLDLSCNKLIGHIPPQIGNLTRIQTLNLSHNNLTGSIPSTFSNLK 585 (717)
Q Consensus 506 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~ 585 (717)
.++.|+.|++++|.+.+..|..|..+++|++|+|++|++++ +|..+..++
T Consensus 246 -----------------------------~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~-~~~~~~~l~ 295 (390)
T 3o6n_A 246 -----------------------------NYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLVA-LNLYGQPIP 295 (390)
T ss_dssp -----------------------------GCTTCSEEECCSSCCCEEESGGGTTCSSCCEEECCSSCCCE-EECSSSCCT
T ss_pred -----------------------------CCCCccEEECCCCcCCCcChhHccccccCCEEECCCCcCcc-cCcccCCCC
Confidence 24589999999999998889999999999999999999995 566778899
Q ss_pred CCCEEECCCCcCCccCchhhcCCCCCCEEeccCCcCeecCCCCCcccCCCCcccccCCcCCCCCC
Q 005038 586 HVESLDLSNNKLNGKIPHQLVELKTLEVFSVAYNNLSGEIPEWKAQFATFNESSYEGNTFLCGLP 650 (717)
Q Consensus 586 ~L~~L~L~~N~i~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~~~~l~~~~~~~n~~~c~~~ 650 (717)
+|++|++++|+++ .+|..+..+++|+.|++++|+++.. | +..+.+++.+.+.+||+.|++.
T Consensus 296 ~L~~L~L~~n~l~-~~~~~~~~l~~L~~L~L~~N~i~~~-~--~~~~~~L~~L~l~~N~~~~~~~ 356 (390)
T 3o6n_A 296 TLKVLDLSHNHLL-HVERNQPQFDRLENLYLDHNSIVTL-K--LSTHHTLKNLTLSHNDWDCNSL 356 (390)
T ss_dssp TCCEEECCSSCCC-CCGGGHHHHTTCSEEECCSSCCCCC-C--CCTTCCCSEEECCSSCEEHHHH
T ss_pred CCCEEECCCCcce-ecCccccccCcCCEEECCCCcccee-C--chhhccCCEEEcCCCCccchhH
Confidence 9999999999998 6777888999999999999999854 4 4677889999999999999764
No 40
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=100.00 E-value=1.7e-31 Score=276.50 Aligned_cols=308 Identities=26% Similarity=0.356 Sum_probs=251.4
Q ss_pred CcCCCCCcCEEEccCCcCCccCCccccccCCCCcEEECCCCCCCccCCccccCCCCCCEEEccCCccccccchhhhhCCC
Q 005038 189 PIHSHKRLRQLDVSNNNIRGHIPVKIGDVLPSLYVFNNSMNALDGSIPSSFGNMKFLQILDLSNNHLTGEIPEHLAVGCV 268 (717)
Q Consensus 189 ~~~~~~~L~~L~ls~n~i~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~ 268 (717)
.+..+++|++|+++++.+. .++. ...+++|++|++++|.+.+..+ +..+++|++|++++|.++ .++. +..++
T Consensus 39 ~~~~l~~L~~L~l~~~~i~-~~~~--~~~~~~L~~L~l~~n~i~~~~~--~~~l~~L~~L~L~~n~i~-~~~~--~~~l~ 110 (347)
T 4fmz_A 39 TQEELESITKLVVAGEKVA-SIQG--IEYLTNLEYLNLNGNQITDISP--LSNLVKLTNLYIGTNKIT-DISA--LQNLT 110 (347)
T ss_dssp CHHHHTTCSEEECCSSCCC-CCTT--GGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCC-CCGG--GTTCT
T ss_pred cchhcccccEEEEeCCccc-cchh--hhhcCCccEEEccCCccccchh--hhcCCcCCEEEccCCccc-CchH--HcCCC
Confidence 3456789999999999997 5553 4458999999999999986443 899999999999999998 5653 45799
Q ss_pred CCCEEEccCcccCccCcccccCCCCCCeEECcCCcCcccCcccccCCCCCCEEEccCCcCcCcCCcccCCCCCCCEEEcc
Q 005038 269 NLQFLALSNNNLQGHLFSRNFNLTNLQWLQLEGNRFVGEIPQSLSKCSSLEGLYLNNNSLLGKIPRWLGNLTRLQYIIMP 348 (717)
Q Consensus 269 ~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~l~ 348 (717)
+|++|++++|.+.+..+ +..+++|++|++++|......+ .+..+++|++|++++|.+.+..+ +..+++|+.|+++
T Consensus 111 ~L~~L~l~~n~i~~~~~--~~~l~~L~~L~l~~n~~~~~~~-~~~~l~~L~~L~l~~~~~~~~~~--~~~l~~L~~L~l~ 185 (347)
T 4fmz_A 111 NLRELYLNEDNISDISP--LANLTKMYSLNLGANHNLSDLS-PLSNMTGLNYLTVTESKVKDVTP--IANLTDLYSLSLN 185 (347)
T ss_dssp TCSEEECTTSCCCCCGG--GTTCTTCCEEECTTCTTCCCCG-GGTTCTTCCEEECCSSCCCCCGG--GGGCTTCSEEECT
T ss_pred cCCEEECcCCcccCchh--hccCCceeEEECCCCCCccccc-chhhCCCCcEEEecCCCcCCchh--hccCCCCCEEEcc
Confidence 99999999999986543 8899999999999997664544 48999999999999999875443 8889999999999
Q ss_pred CCcccCCcccccCCCCCCCEEEccCCcCcccCCCccccccccEEeccCcccccccCccccCCCCcCCEEeCCCCcCCccc
Q 005038 349 NNHLEGPIPVEFCQLDSLQILDISDNNISGSLPSCFHPLSIKQVHLSKNMLHGQLKRGTFFNCSSLVTLDLSYNRLNGSI 428 (717)
Q Consensus 349 ~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~L~~n~~~~~~ 428 (717)
+|.+.+..+ +..+++|+.+++++|.+.+..+ +..+++|++|++++|.+++..
T Consensus 186 ~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~~~--------------------------~~~~~~L~~L~l~~n~l~~~~ 237 (347)
T 4fmz_A 186 YNQIEDISP--LASLTSLHYFTAYVNQITDITP--------------------------VANMTRLNSLKIGNNKITDLS 237 (347)
T ss_dssp TSCCCCCGG--GGGCTTCCEEECCSSCCCCCGG--------------------------GGGCTTCCEEECCSSCCCCCG
T ss_pred CCccccccc--ccCCCccceeecccCCCCCCch--------------------------hhcCCcCCEEEccCCccCCCc
Confidence 999986544 7889999999999998763211 556788888888888888544
Q ss_pred chhhhCCCCCcEEEcCCCccccccchhccCCCCCCEEEccCCcCccCCCcccccccccccccCCCCCCcchhhhhhcccc
Q 005038 429 PDWVDGLSQLSHLILGHNNLEGEVSVQLCELNQLQLLDLSNNNLHGPIPPCFDNTTLHESYSNSSSPDEQFEIFFSIEGH 508 (717)
Q Consensus 429 ~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 508 (717)
+ +..+++|++|++++|.+++. ..+..+++|+.|++++|++++. ..+.
T Consensus 238 ~--~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~l~~n~l~~~--~~~~--------------------------- 284 (347)
T 4fmz_A 238 P--LANLSQLTWLEIGTNQISDI--NAVKDLTKLKMLNVGSNQISDI--SVLN--------------------------- 284 (347)
T ss_dssp G--GTTCTTCCEEECCSSCCCCC--GGGTTCTTCCEEECCSSCCCCC--GGGG---------------------------
T ss_pred c--hhcCCCCCEEECCCCccCCC--hhHhcCCCcCEEEccCCccCCC--hhhc---------------------------
Confidence 3 77888999999999988854 4578888999999999988653 1122
Q ss_pred cccccccccceEEEeeccceeeeccccccccceeeCCCCccCCCCcccccCCccCCeEeCCCcccCCCCCcCCCCCCCCC
Q 005038 509 QGFLEKQNHEIFEFTTKNIAYIYQGKVLSLLSGLDLSCNKLIGHIPPQIGNLTRIQTLNLSHNNLTGSIPSTFSNLKHVE 588 (717)
Q Consensus 509 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~ 588 (717)
.+++|+.|++++|++++..+..+..+++|++|++++|++++..| +..+++|+
T Consensus 285 --------------------------~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~ 336 (347)
T 4fmz_A 285 --------------------------NLSQLNSLFLNNNQLGNEDMEVIGGLTNLTTLFLSQNHITDIRP--LASLSKMD 336 (347)
T ss_dssp --------------------------GCTTCSEEECCSSCCCGGGHHHHHTCTTCSEEECCSSSCCCCGG--GGGCTTCS
T ss_pred --------------------------CCCCCCEEECcCCcCCCcChhHhhccccCCEEEccCCccccccC--hhhhhccc
Confidence 23479999999999988888889999999999999999997655 88899999
Q ss_pred EEECCCCcCC
Q 005038 589 SLDLSNNKLN 598 (717)
Q Consensus 589 ~L~L~~N~i~ 598 (717)
+|++++|+++
T Consensus 337 ~L~l~~N~i~ 346 (347)
T 4fmz_A 337 SADFANQVIK 346 (347)
T ss_dssp EESSSCC---
T ss_pred eeehhhhccc
Confidence 9999999986
No 41
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=100.00 E-value=9.4e-32 Score=298.37 Aligned_cols=311 Identities=20% Similarity=0.234 Sum_probs=271.0
Q ss_pred CCCCCEEEccCcccCccCcccccCCCCCCeEECcCCcCcccCcccccCCCCCCEEEccCCcCcCcCCcccCCCCCCCEEE
Q 005038 267 CVNLQFLALSNNNLQGHLFSRNFNLTNLQWLQLEGNRFVGEIPQSLSKCSSLEGLYLNNNSLLGKIPRWLGNLTRLQYII 346 (717)
Q Consensus 267 ~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~ 346 (717)
+.+++.+++++|.+....+..+..+++|++|++++|.+.+..+..|..+++|++|++++|.+.+..|..|+.+++|+.|+
T Consensus 50 l~~l~~l~l~~~~l~~lp~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ 129 (597)
T 3oja_B 50 LNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLV 129 (597)
T ss_dssp GCCCSEEEESSCEESEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEE
T ss_pred CCCceEEEeeCCCCCCcCHHHHccCCCCcEEECCCCCCCCCChHHhcCCCCCCEEECCCCcCCCCCHHHHcCCCCCCEEE
Confidence 67899999999999987777788999999999999999988888999999999999999999988888899999999999
Q ss_pred ccCCcccCCcccccCCCCCCCEEEccCCcCcccCCCccc-cccccEEeccCcccccccCccccCCCCcCCEEeCCCCcCC
Q 005038 347 MPNNHLEGPIPVEFCQLDSLQILDISDNNISGSLPSCFH-PLSIKQVHLSKNMLHGQLKRGTFFNCSSLVTLDLSYNRLN 425 (717)
Q Consensus 347 l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~-~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~L~~n~~~ 425 (717)
+++|.+++..+..|..+++|++|++++|.+.+..+..+. +++|+.|++++|.+.+. + +..+++|+.|++++|.+.
T Consensus 130 L~~n~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~-~---~~~l~~L~~L~l~~n~l~ 205 (597)
T 3oja_B 130 LERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHV-D---LSLIPSLFHANVSYNLLS 205 (597)
T ss_dssp CCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECTTSCCSBC-C---GGGCTTCSEEECCSSCCS
T ss_pred eeCCCCCCCCHHHhccCCCCCEEEeeCCcCCCCChhhhhcCCcCcEEECcCCCCCCc-C---hhhhhhhhhhhcccCccc
Confidence 999999977777789999999999999999988887665 78999999999998653 2 556789999999999887
Q ss_pred cccchhhhCCCCCcEEEcCCCccccccchhccCCCCCCEEEccCCcCccCCCcccccccccccccCCCCCCcchhhhhhc
Q 005038 426 GSIPDWVDGLSQLSHLILGHNNLEGEVSVQLCELNQLQLLDLSNNNLHGPIPPCFDNTTLHESYSNSSSPDEQFEIFFSI 505 (717)
Q Consensus 426 ~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 505 (717)
+ +...++|+.|++++|.+....+.. .++|+.|++++|.+++. ..+..
T Consensus 206 ~-----l~~~~~L~~L~ls~n~l~~~~~~~---~~~L~~L~L~~n~l~~~--~~l~~----------------------- 252 (597)
T 3oja_B 206 T-----LAIPIAVEELDASHNSINVVRGPV---NVELTILKLQHNNLTDT--AWLLN----------------------- 252 (597)
T ss_dssp E-----EECCTTCSEEECCSSCCCEEECSC---CSCCCEEECCSSCCCCC--GGGGG-----------------------
T ss_pred c-----ccCCchhheeeccCCccccccccc---CCCCCEEECCCCCCCCC--hhhcc-----------------------
Confidence 4 344578999999999998554432 36899999999998752 22222
Q ss_pred ccccccccccccceEEEeeccceeeeccccccccceeeCCCCccCCCCcccccCCccCCeEeCCCcccCCCCCcCCCCCC
Q 005038 506 EGHQGFLEKQNHEIFEFTTKNIAYIYQGKVLSLLSGLDLSCNKLIGHIPPQIGNLTRIQTLNLSHNNLTGSIPSTFSNLK 585 (717)
Q Consensus 506 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~ 585 (717)
++.|+.|+|++|.+.+..|..|..+++|+.|+|++|.+++ +|..+..++
T Consensus 253 ------------------------------l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~-l~~~~~~l~ 301 (597)
T 3oja_B 253 ------------------------------YPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLVA-LNLYGQPIP 301 (597)
T ss_dssp ------------------------------CTTCSEEECCSSCCCEEESGGGTTCSSCCEEECTTSCCCE-EECSSSCCT
T ss_pred ------------------------------CCCCCEEECCCCccCCCCHHHhcCccCCCEEECCCCCCCC-CCcccccCC
Confidence 4489999999999999889999999999999999999995 577778899
Q ss_pred CCCEEECCCCcCCccCchhhcCCCCCCEEeccCCcCeecCCCCCcccCCCCcccccCCcCCCCC
Q 005038 586 HVESLDLSNNKLNGKIPHQLVELKTLEVFSVAYNNLSGEIPEWKAQFATFNESSYEGNTFLCGL 649 (717)
Q Consensus 586 ~L~~L~L~~N~i~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~~~~l~~~~~~~n~~~c~~ 649 (717)
+|++|+|++|+++ .+|..+..+++|+.|++++|++++. | +..+..+..+.+.+||+.|++
T Consensus 302 ~L~~L~Ls~N~l~-~i~~~~~~l~~L~~L~L~~N~l~~~-~--~~~~~~L~~L~l~~N~~~~~~ 361 (597)
T 3oja_B 302 TLKVLDLSHNHLL-HVERNQPQFDRLENLYLDHNSIVTL-K--LSTHHTLKNLTLSHNDWDCNS 361 (597)
T ss_dssp TCCEEECCSSCCC-CCGGGHHHHTTCSEEECCSSCCCCC-C--CCTTCCCSEEECCSSCEEHHH
T ss_pred CCcEEECCCCCCC-ccCcccccCCCCCEEECCCCCCCCc-C--hhhcCCCCEEEeeCCCCCChh
Confidence 9999999999998 6888889999999999999999865 3 356788899999999999976
No 42
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.98 E-value=1.7e-30 Score=266.63 Aligned_cols=291 Identities=23% Similarity=0.304 Sum_probs=214.5
Q ss_pred CCCEEEccCCccccccchhhhhCCCCCCEEEccCcccCccCcccccCCCCCCeEECcCCcCcccCcccccCCCCCCEEEc
Q 005038 244 FLQILDLSNNHLTGEIPEHLAVGCVNLQFLALSNNNLQGHLFSRNFNLTNLQWLQLEGNRFVGEIPQSLSKCSSLEGLYL 323 (717)
Q Consensus 244 ~L~~L~Ls~n~l~~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 323 (717)
+++.++++++.++ .+|..+ .+++++|++++|.+++..+..|.++++|++|++++|.+.+..|..+..+++|++|++
T Consensus 32 ~l~~l~~~~~~l~-~lp~~~---~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 107 (330)
T 1xku_A 32 HLRVVQCSDLGLE-KVPKDL---PPDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYL 107 (330)
T ss_dssp ETTEEECTTSCCC-SCCCSC---CTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEEC
T ss_pred CCeEEEecCCCcc-ccCccC---CCCCeEEECCCCcCCEeChhhhccCCCCCEEECCCCcCCeeCHHHhcCCCCCCEEEC
Confidence 5667777777776 666544 356777788777777766667777888888888888887776777888888888888
Q ss_pred cCCcCcCcCCcccCCCCCCCEEEccCCcccCCcccccCCCCCCCEEEccCCcCcccCCCccccccccEEeccCccccccc
Q 005038 324 NNNSLLGKIPRWLGNLTRLQYIIMPNNHLEGPIPVEFCQLDSLQILDISDNNISGSLPSCFHPLSIKQVHLSKNMLHGQL 403 (717)
Q Consensus 324 ~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~L~~L~l~~n~~~~~~ 403 (717)
++|.+. .+|..+. ++|+.|++++|.+.+..+..+..+++|++|++++|.+... ..
T Consensus 108 s~n~l~-~l~~~~~--~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~----------------------~~ 162 (330)
T 1xku_A 108 SKNQLK-ELPEKMP--KTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSS----------------------GI 162 (330)
T ss_dssp CSSCCS-BCCSSCC--TTCCEEECCSSCCCBBCHHHHTTCTTCCEEECCSSCCCGG----------------------GB
T ss_pred CCCcCC-ccChhhc--ccccEEECCCCcccccCHhHhcCCccccEEECCCCcCCcc----------------------Cc
Confidence 888776 4454443 6788888888888877777788888888888888876521 11
Q ss_pred CccccCCCCcCCEEeCCCCcCCcccchhhhCCCCCcEEEcCCCccccccchhccCCCCCCEEEccCCcCccCCCcccccc
Q 005038 404 KRGTFFNCSSLVTLDLSYNRLNGSIPDWVDGLSQLSHLILGHNNLEGEVSVQLCELNQLQLLDLSNNNLHGPIPPCFDNT 483 (717)
Q Consensus 404 ~~~~~~~~~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~ 483 (717)
....+..+++|++|++++|.++. +|..+. ++|++|++++|++++..+..+..+++|+.|++++|.+++..+..+..+
T Consensus 163 ~~~~~~~l~~L~~L~l~~n~l~~-l~~~~~--~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l 239 (330)
T 1xku_A 163 ENGAFQGMKKLSYIRIADTNITT-IPQGLP--PSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANT 239 (330)
T ss_dssp CTTGGGGCTTCCEEECCSSCCCS-CCSSCC--TTCSEEECTTSCCCEECTGGGTTCTTCCEEECCSSCCCEECTTTGGGS
T ss_pred ChhhccCCCCcCEEECCCCcccc-CCcccc--ccCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCceeChhhccCC
Confidence 22236677788888888888774 343332 778888888888887777788888888888888888876665555443
Q ss_pred cccccccCCCCCCcchhhhhhcccccccccccccceEEEeeccceeeeccccccccceeeCCCCccCCCCcccccCCccC
Q 005038 484 TLHESYSNSSSPDEQFEIFFSIEGHQGFLEKQNHEIFEFTTKNIAYIYQGKVLSLLSGLDLSCNKLIGHIPPQIGNLTRI 563 (717)
Q Consensus 484 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L 563 (717)
++|+.|++++|+++ .+|..+..+++|
T Consensus 240 -----------------------------------------------------~~L~~L~L~~N~l~-~lp~~l~~l~~L 265 (330)
T 1xku_A 240 -----------------------------------------------------PHLRELHLNNNKLV-KVPGGLADHKYI 265 (330)
T ss_dssp -----------------------------------------------------TTCCEEECCSSCCS-SCCTTTTTCSSC
T ss_pred -----------------------------------------------------CCCCEEECCCCcCc-cCChhhccCCCc
Confidence 36888888888887 667778888899
Q ss_pred CeEeCCCcccCCCCCcCCCC------CCCCCEEECCCCcCCc--cCchhhcCCCCCCEEeccCCc
Q 005038 564 QTLNLSHNNLTGSIPSTFSN------LKHVESLDLSNNKLNG--KIPHQLVELKTLEVFSVAYNN 620 (717)
Q Consensus 564 ~~L~Ls~n~l~~~~p~~~~~------l~~L~~L~L~~N~i~~--~~p~~~~~l~~L~~L~l~~N~ 620 (717)
++|++++|++++..+..|.. .++|+.|++++|++.. ..|..|..+.+++.+++++|+
T Consensus 266 ~~L~l~~N~i~~~~~~~f~~~~~~~~~~~l~~l~l~~N~~~~~~i~~~~f~~~~~l~~l~L~~N~ 330 (330)
T 1xku_A 266 QVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQYWEIQPSTFRCVYVRAAVQLGNYK 330 (330)
T ss_dssp CEEECCSSCCCCCCTTSSSCSSCCTTSCCCSEEECCSSSSCGGGSCGGGGTTCCCGGGEEC----
T ss_pred CEEECCCCcCCccChhhcCCcccccccccccceEeecCcccccccCccccccccceeEEEecccC
Confidence 99999999998777666754 3788899999998863 567788888999999998884
No 43
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.98 E-value=7.3e-31 Score=269.48 Aligned_cols=290 Identities=22% Similarity=0.292 Sum_probs=209.3
Q ss_pred CCCEEEccCCccccccchhhhhCCCCCCEEEccCcccCccCcccccCCCCCCeEECcCCcCcccCcccccCCCCCCEEEc
Q 005038 244 FLQILDLSNNHLTGEIPEHLAVGCVNLQFLALSNNNLQGHLFSRNFNLTNLQWLQLEGNRFVGEIPQSLSKCSSLEGLYL 323 (717)
Q Consensus 244 ~L~~L~Ls~n~l~~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 323 (717)
+++.++++++.++ .+|..+ .+++++|++++|.+.+..+..+.++++|++|++++|.+.+..|..+..+++|++|++
T Consensus 34 ~l~~l~~~~~~l~-~ip~~~---~~~l~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 109 (332)
T 2ft3_A 34 HLRVVQCSDLGLK-AVPKEI---SPDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYI 109 (332)
T ss_dssp ETTEEECCSSCCS-SCCSCC---CTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGSTTCTTCCEEEC
T ss_pred cCCEEECCCCCcc-ccCCCC---CCCCeEEECCCCcCCccCHhHhhCCCCCcEEECCCCccCccCHhHhhCcCCCCEEEC
Confidence 5777888888777 677655 357888888888888777777888888888888888888777778888888888888
Q ss_pred cCCcCcCcCCcccCCCCCCCEEEccCCcccCCcccccCCCCCCCEEEccCCcCcccCCCccccccccEEeccCccccccc
Q 005038 324 NNNSLLGKIPRWLGNLTRLQYIIMPNNHLEGPIPVEFCQLDSLQILDISDNNISGSLPSCFHPLSIKQVHLSKNMLHGQL 403 (717)
Q Consensus 324 ~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~L~~L~l~~n~~~~~~ 403 (717)
++|.+. .+|..+. ++|++|++++|.+.+..+..+..+++|++|++++|.+... ..
T Consensus 110 ~~n~l~-~l~~~~~--~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~----------------------~~ 164 (332)
T 2ft3_A 110 SKNHLV-EIPPNLP--SSLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLENS----------------------GF 164 (332)
T ss_dssp CSSCCC-SCCSSCC--TTCCEEECCSSCCCCCCSGGGSSCSSCCEEECCSCCCBGG----------------------GS
T ss_pred CCCcCC-ccCcccc--ccCCEEECCCCccCccCHhHhCCCccCCEEECCCCccccC----------------------CC
Confidence 888877 4554443 7888888888888877667788888888888888877521 01
Q ss_pred CccccCCCCcCCEEeCCCCcCCcccchhhhCCCCCcEEEcCCCccccccchhccCCCCCCEEEccCCcCccCCCcccccc
Q 005038 404 KRGTFFNCSSLVTLDLSYNRLNGSIPDWVDGLSQLSHLILGHNNLEGEVSVQLCELNQLQLLDLSNNNLHGPIPPCFDNT 483 (717)
Q Consensus 404 ~~~~~~~~~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~ 483 (717)
....+..+ +|++|++++|.+++ +|..+. ++|++|++++|++++..+..+..+++|+.|++++|++++..+..+..+
T Consensus 165 ~~~~~~~l-~L~~L~l~~n~l~~-l~~~~~--~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~l 240 (332)
T 2ft3_A 165 EPGAFDGL-KLNYLRISEAKLTG-IPKDLP--ETLNELHLDHNKIQAIELEDLLRYSKLYRLGLGHNQIRMIENGSLSFL 240 (332)
T ss_dssp CTTSSCSC-CCSCCBCCSSBCSS-CCSSSC--SSCSCCBCCSSCCCCCCTTSSTTCTTCSCCBCCSSCCCCCCTTGGGGC
T ss_pred CcccccCC-ccCEEECcCCCCCc-cCcccc--CCCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCCcCChhHhhCC
Confidence 11224444 67777777777664 333332 577777777777776666677777777777777777766555544432
Q ss_pred cccccccCCCCCCcchhhhhhcccccccccccccceEEEeeccceeeeccccccccceeeCCCCccCCCCcccccCCccC
Q 005038 484 TLHESYSNSSSPDEQFEIFFSIEGHQGFLEKQNHEIFEFTTKNIAYIYQGKVLSLLSGLDLSCNKLIGHIPPQIGNLTRI 563 (717)
Q Consensus 484 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L 563 (717)
++|+.|++++|+++ .+|..+..+++|
T Consensus 241 -----------------------------------------------------~~L~~L~L~~N~l~-~lp~~l~~l~~L 266 (332)
T 2ft3_A 241 -----------------------------------------------------PTLRELHLDNNKLS-RVPAGLPDLKLL 266 (332)
T ss_dssp -----------------------------------------------------TTCCEEECCSSCCC-BCCTTGGGCTTC
T ss_pred -----------------------------------------------------CCCCEEECCCCcCe-ecChhhhcCccC
Confidence 26777778877777 566778888888
Q ss_pred CeEeCCCcccCCCCCcCCCCC------CCCCEEECCCCcCC--ccCchhhcCCCCCCEEeccCCc
Q 005038 564 QTLNLSHNNLTGSIPSTFSNL------KHVESLDLSNNKLN--GKIPHQLVELKTLEVFSVAYNN 620 (717)
Q Consensus 564 ~~L~Ls~n~l~~~~p~~~~~l------~~L~~L~L~~N~i~--~~~p~~~~~l~~L~~L~l~~N~ 620 (717)
++|++++|++++..+..|... ++|+.|++++|++. +..|..|..+++|+.+++++|+
T Consensus 267 ~~L~l~~N~l~~~~~~~~~~~~~~~~~~~l~~L~l~~N~~~~~~~~~~~~~~l~~L~~l~l~~n~ 331 (332)
T 2ft3_A 267 QVVYLHTNNITKVGVNDFCPVGFGVKRAYYNGISLFNNPVPYWEVQPATFRCVTDRLAIQFGNYK 331 (332)
T ss_dssp CEEECCSSCCCBCCTTSSSCSSCCSSSCCBSEEECCSSSSCGGGSCGGGGTTBCCSTTEEC----
T ss_pred CEEECCCCCCCccChhHccccccccccccccceEeecCcccccccCcccccccchhhhhhccccc
Confidence 888888888887666666553 67888888888887 5677788888888888888874
No 44
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.97 E-value=5.5e-34 Score=307.63 Aligned_cols=256 Identities=22% Similarity=0.174 Sum_probs=153.7
Q ss_pred CCcCEEEccCCcCCccCCccccccCCCCcEEECCCCCCCc----cCCccccCCCCCCEEEccCCccccccchhhhhCCC-
Q 005038 194 KRLRQLDVSNNNIRGHIPVKIGDVLPSLYVFNNSMNALDG----SIPSSFGNMKFLQILDLSNNHLTGEIPEHLAVGCV- 268 (717)
Q Consensus 194 ~~L~~L~ls~n~i~~~~~~~~~~~l~~L~~L~l~~n~~~~----~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~- 268 (717)
++|++|++++|.++......++..+++|++|++++|.+.. .++..+..+++|++|++++|.+.+..+..++..++
T Consensus 3 ~~l~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~ 82 (461)
T 1z7x_W 3 LDIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGDVGVHCVLQGLQT 82 (461)
T ss_dssp EEEEEEEEESCCCCHHHHHHHHHHHTTCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTCCCHHHHHHHHHHTTCS
T ss_pred ccceehhhhhcccCchhHHHHHhhcCCccEEEccCCCCCHHHHHHHHHHHHhCCCcCEEeCCCCcCChHHHHHHHHHHhh
Confidence 4567777777777644333434556777777777777763 34566777888888888888887555556665565
Q ss_pred ---CCCEEEccCcccCc----cCcccccCCCCCCeEECcCCcCcccCcccc-----cCCCCCCEEEccCCcCcCcC----
Q 005038 269 ---NLQFLALSNNNLQG----HLFSRNFNLTNLQWLQLEGNRFVGEIPQSL-----SKCSSLEGLYLNNNSLLGKI---- 332 (717)
Q Consensus 269 ---~L~~L~L~~n~i~~----~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~-----~~l~~L~~L~L~~n~~~~~~---- 332 (717)
+|++|++++|.++. .++..+..+++|++|++++|.+.+..+..+ ...++|++|++++|.+++..
T Consensus 83 ~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l 162 (461)
T 1z7x_W 83 PSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPL 162 (461)
T ss_dssp TTCCCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHH
T ss_pred CCCceeEEEccCCCCCHHHHHHHHHHHccCCceeEEECCCCcCchHHHHHHHHHHhcCCCcceEEECCCCCCCHHHHHHH
Confidence 68888888888774 346677788888888888888765433322 23557888888888776533
Q ss_pred CcccCCCCCCCEEEccCCcccCCcccccC-----CCCCCCEEEccCCcCcccC----CCcc-ccccccEEeccCcccccc
Q 005038 333 PRWLGNLTRLQYIIMPNNHLEGPIPVEFC-----QLDSLQILDISDNNISGSL----PSCF-HPLSIKQVHLSKNMLHGQ 402 (717)
Q Consensus 333 ~~~~~~l~~L~~L~l~~n~~~~~~~~~~~-----~l~~L~~L~l~~n~~~~~~----~~~~-~~~~L~~L~l~~n~~~~~ 402 (717)
+..+..+++|+.|++++|.+.+..+..+. ..++|++|++++|.+.+.. +..+ ..++|+.|++++|.+.+.
T Consensus 163 ~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~ 242 (461)
T 1z7x_W 163 ASVLRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKLGDV 242 (461)
T ss_dssp HHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHHHSCCCCCEEECTTSCCBTTHHHHHHHHHHHCTTCCEEECCSSBCHHH
T ss_pred HHHHhhCCCCCEEECcCCCcchHHHHHHHHHHhcCCCCceEEEccCCCCcHHHHHHHHHHHHhCCCccEEeccCCcCChH
Confidence 44555677888888888877644333332 2557778888777765421 1111 133444444444443221
Q ss_pred ----cCccccCCCCcCCEEeCCCCcCCcc----cchhhhCCCCCcEEEcCCCccc
Q 005038 403 ----LKRGTFFNCSSLVTLDLSYNRLNGS----IPDWVDGLSQLSHLILGHNNLE 449 (717)
Q Consensus 403 ----~~~~~~~~~~~L~~L~L~~n~~~~~----~~~~~~~l~~L~~L~L~~n~l~ 449 (717)
+....+..+++|++|++++|.+++. ++..+..+++|++|++++|.++
T Consensus 243 ~~~~l~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~ 297 (461)
T 1z7x_W 243 GMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELG 297 (461)
T ss_dssp HHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCTTCCEEECTTCCCH
T ss_pred HHHHHHHHHhcCCCCceEEECcCCCCCHHHHHHHHHHHhhCCCcceEECCCCCCc
Confidence 1111122344555555555554432 2333444455555555555544
No 45
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=99.97 E-value=2.2e-31 Score=270.06 Aligned_cols=252 Identities=31% Similarity=0.501 Sum_probs=153.1
Q ss_pred CCCeEECcCCcCcc--cCcccccCCCCCCEEEccC-CcCcCcCCcccCCCCCCCEEEccCCcccCCcccccCCCCCCCEE
Q 005038 293 NLQWLQLEGNRFVG--EIPQSLSKCSSLEGLYLNN-NSLLGKIPRWLGNLTRLQYIIMPNNHLEGPIPVEFCQLDSLQIL 369 (717)
Q Consensus 293 ~L~~L~L~~n~l~~--~~~~~~~~l~~L~~L~L~~-n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L 369 (717)
++++|++++|.+.+ .+|..+..+++|++|++++ |.+.+.+|..|..+++|++|++++|.+++..|..+..+++|++|
T Consensus 51 ~l~~L~L~~~~l~~~~~~~~~l~~l~~L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L 130 (313)
T 1ogq_A 51 RVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTL 130 (313)
T ss_dssp CEEEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCEE
T ss_pred eEEEEECCCCCccCCcccChhHhCCCCCCeeeCCCCCcccccCChhHhcCCCCCEEECcCCeeCCcCCHHHhCCCCCCEE
Confidence 45555555555554 4455555555555555553 55555555555555555555555555555555555555555555
Q ss_pred EccCCcCcccCCCccccccccEEeccCcccccccCccccCCCCcCCEEeCCCCcCCcccchhhhCCC-CCcEEEcCCCcc
Q 005038 370 DISDNNISGSLPSCFHPLSIKQVHLSKNMLHGQLKRGTFFNCSSLVTLDLSYNRLNGSIPDWVDGLS-QLSHLILGHNNL 448 (717)
Q Consensus 370 ~l~~n~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~~~~l~-~L~~L~L~~n~l 448 (717)
++++|.+.+..|. . +..+++|++|++++|++++.+|..+..++ +|++|++++|++
T Consensus 131 ~Ls~N~l~~~~p~-----------------------~-~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~~L~~L~L~~N~l 186 (313)
T 1ogq_A 131 DFSYNALSGTLPP-----------------------S-ISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRL 186 (313)
T ss_dssp ECCSSEEESCCCG-----------------------G-GGGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEE
T ss_pred eCCCCccCCcCCh-----------------------H-HhcCCCCCeEECcCCcccCcCCHHHhhhhhcCcEEECcCCee
Confidence 5555555432221 1 34445555555555555555555555554 556666666665
Q ss_pred ccccchhccCCCCCCEEEccCCcCccCCCcccccccccccccCCCCCCcchhhhhhcccccccccccccceEEEeeccce
Q 005038 449 EGEVSVQLCELNQLQLLDLSNNNLHGPIPPCFDNTTLHESYSNSSSPDEQFEIFFSIEGHQGFLEKQNHEIFEFTTKNIA 528 (717)
Q Consensus 449 ~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 528 (717)
++..|..+..++ |+.|++++|.+++..|..+..++
T Consensus 187 ~~~~~~~~~~l~-L~~L~Ls~N~l~~~~~~~~~~l~-------------------------------------------- 221 (313)
T 1ogq_A 187 TGKIPPTFANLN-LAFVDLSRNMLEGDASVLFGSDK-------------------------------------------- 221 (313)
T ss_dssp EEECCGGGGGCC-CSEEECCSSEEEECCGGGCCTTS--------------------------------------------
T ss_pred eccCChHHhCCc-ccEEECcCCcccCcCCHHHhcCC--------------------------------------------
Confidence 555555555554 66666666665555444443322
Q ss_pred eeeccccccccceeeCCCCccCCCCcccccCCccCCeEeCCCcccCCCCCcCCCCCCCCCEEECCCCcCCccCchhhcCC
Q 005038 529 YIYQGKVLSLLSGLDLSCNKLIGHIPPQIGNLTRIQTLNLSHNNLTGSIPSTFSNLKHVESLDLSNNKLNGKIPHQLVEL 608 (717)
Q Consensus 529 ~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~N~i~~~~p~~~~~l 608 (717)
.|+.|++++|++++..|. +..+++|++|++++|++++.+|..|..+++|++|++++|++++.+|+. ..+
T Consensus 222 ---------~L~~L~L~~N~l~~~~~~-~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~-~~l 290 (313)
T 1ogq_A 222 ---------NTQKIHLAKNSLAFDLGK-VGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQG-GNL 290 (313)
T ss_dssp ---------CCSEEECCSSEECCBGGG-CCCCTTCCEEECCSSCCEECCCGGGGGCTTCCEEECCSSEEEEECCCS-TTG
T ss_pred ---------CCCEEECCCCceeeecCc-ccccCCCCEEECcCCcccCcCChHHhcCcCCCEEECcCCcccccCCCC-ccc
Confidence 566666666666644443 667778888888888888778888888888888888888888777765 677
Q ss_pred CCCCEEeccCCcCeec
Q 005038 609 KTLEVFSVAYNNLSGE 624 (717)
Q Consensus 609 ~~L~~L~l~~N~l~~~ 624 (717)
++|+.+++++|+..+.
T Consensus 291 ~~L~~l~l~~N~~lc~ 306 (313)
T 1ogq_A 291 QRFDVSAYANNKCLCG 306 (313)
T ss_dssp GGSCGGGTCSSSEEES
T ss_pred cccChHHhcCCCCccC
Confidence 8888888888874433
No 46
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.97 E-value=4.2e-30 Score=263.82 Aligned_cols=288 Identities=21% Similarity=0.239 Sum_probs=179.6
Q ss_pred CCCEEEccCcccCccCcccccCCCCCCeEECcCCcCcccCcccccCCCCCCEEEccCCcCcCcCCcccCCCCCCCEEEcc
Q 005038 269 NLQFLALSNNNLQGHLFSRNFNLTNLQWLQLEGNRFVGEIPQSLSKCSSLEGLYLNNNSLLGKIPRWLGNLTRLQYIIMP 348 (717)
Q Consensus 269 ~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~l~ 348 (717)
+++.++++++.++. +|..+ .++|++|++++|.+.+..+..+..+++|++|++++|.+.+..|..|..+++|++|+++
T Consensus 34 ~l~~l~~~~~~l~~-ip~~~--~~~l~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~ 110 (332)
T 2ft3_A 34 HLRVVQCSDLGLKA-VPKEI--SPDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYIS 110 (332)
T ss_dssp ETTEEECCSSCCSS-CCSCC--CTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGSTTCTTCCEEECC
T ss_pred cCCEEECCCCCccc-cCCCC--CCCCeEEECCCCcCCccCHhHhhCCCCCcEEECCCCccCccCHhHhhCcCCCCEEECC
Confidence 45556665555542 33332 2455555555555554444455555555555555555554444455555555555555
Q ss_pred CCcccCCcccccCCCCCCCEEEccCCcCcccCCCccccccccEEeccCcccccccCccccCCCCcCCEEeCCCCcCCc--
Q 005038 349 NNHLEGPIPVEFCQLDSLQILDISDNNISGSLPSCFHPLSIKQVHLSKNMLHGQLKRGTFFNCSSLVTLDLSYNRLNG-- 426 (717)
Q Consensus 349 ~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~L~~n~~~~-- 426 (717)
+|.++. +|..+. ++|++|++++|.+. .++...|..+++|++|++++|.+..
T Consensus 111 ~n~l~~-l~~~~~--~~L~~L~l~~n~i~------------------------~~~~~~~~~l~~L~~L~l~~n~l~~~~ 163 (332)
T 2ft3_A 111 KNHLVE-IPPNLP--SSLVELRIHDNRIR------------------------KVPKGVFSGLRNMNCIEMGGNPLENSG 163 (332)
T ss_dssp SSCCCS-CCSSCC--TTCCEEECCSSCCC------------------------CCCSGGGSSCSSCCEEECCSCCCBGGG
T ss_pred CCcCCc-cCcccc--ccCCEEECCCCccC------------------------ccCHhHhCCCccCCEEECCCCccccCC
Confidence 555442 222221 34444444444433 2334447777888888888888753
Q ss_pred ccchhhhCCCCCcEEEcCCCccccccchhccCCCCCCEEEccCCcCccCCCcccccccccccccCCCCCCcchhhhhhcc
Q 005038 427 SIPDWVDGLSQLSHLILGHNNLEGEVSVQLCELNQLQLLDLSNNNLHGPIPPCFDNTTLHESYSNSSSPDEQFEIFFSIE 506 (717)
Q Consensus 427 ~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 506 (717)
..+..+..+ +|+.|++++|++++. |..+. ++|+.|++++|.+++..+..+..++
T Consensus 164 ~~~~~~~~l-~L~~L~l~~n~l~~l-~~~~~--~~L~~L~l~~n~i~~~~~~~l~~l~---------------------- 217 (332)
T 2ft3_A 164 FEPGAFDGL-KLNYLRISEAKLTGI-PKDLP--ETLNELHLDHNKIQAIELEDLLRYS---------------------- 217 (332)
T ss_dssp SCTTSSCSC-CCSCCBCCSSBCSSC-CSSSC--SSCSCCBCCSSCCCCCCTTSSTTCT----------------------
T ss_pred CCcccccCC-ccCEEECcCCCCCcc-Ccccc--CCCCEEECCCCcCCccCHHHhcCCC----------------------
Confidence 556666666 788888888888753 33332 6788888888888766665554433
Q ss_pred cccccccccccceEEEeeccceeeeccccccccceeeCCCCccCCCCcccccCCccCCeEeCCCcccCCCCCcCCCCCCC
Q 005038 507 GHQGFLEKQNHEIFEFTTKNIAYIYQGKVLSLLSGLDLSCNKLIGHIPPQIGNLTRIQTLNLSHNNLTGSIPSTFSNLKH 586 (717)
Q Consensus 507 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~ 586 (717)
.|+.|++++|++.+..+..+..+++|++|++++|+++ .+|..+..+++
T Consensus 218 -------------------------------~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~-~lp~~l~~l~~ 265 (332)
T 2ft3_A 218 -------------------------------KLYRLGLGHNQIRMIENGSLSFLPTLRELHLDNNKLS-RVPAGLPDLKL 265 (332)
T ss_dssp -------------------------------TCSCCBCCSSCCCCCCTTGGGGCTTCCEEECCSSCCC-BCCTTGGGCTT
T ss_pred -------------------------------CCCEEECCCCcCCcCChhHhhCCCCCCEEECCCCcCe-ecChhhhcCcc
Confidence 6788888888888777777888888888888888887 66777788888
Q ss_pred CCEEECCCCcCCccCchhhcC------CCCCCEEeccCCcCe--ecCCCCCcccCCCCcccccCCc
Q 005038 587 VESLDLSNNKLNGKIPHQLVE------LKTLEVFSVAYNNLS--GEIPEWKAQFATFNESSYEGNT 644 (717)
Q Consensus 587 L~~L~L~~N~i~~~~p~~~~~------l~~L~~L~l~~N~l~--~~~p~~~~~~~~l~~~~~~~n~ 644 (717)
|++|++++|++++..+..|.. ..+|+.|++++|++. +..|..+..+..++.+.+.+|.
T Consensus 266 L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~l~~L~l~~N~~~~~~~~~~~~~~l~~L~~l~l~~n~ 331 (332)
T 2ft3_A 266 LQVVYLHTNNITKVGVNDFCPVGFGVKRAYYNGISLFNNPVPYWEVQPATFRCVTDRLAIQFGNYK 331 (332)
T ss_dssp CCEEECCSSCCCBCCTTSSSCSSCCSSSCCBSEEECCSSSSCGGGSCGGGGTTBCCSTTEEC----
T ss_pred CCEEECCCCCCCccChhHccccccccccccccceEeecCcccccccCcccccccchhhhhhccccc
Confidence 888888888887666665554 356788888888876 4555556666777777666653
No 47
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.97 E-value=9.9e-34 Score=305.66 Aligned_cols=391 Identities=19% Similarity=0.110 Sum_probs=252.5
Q ss_pred CCCCEEEccCCCCcccCChhhhhCCCCCCEEEccCCcCccc----CccCcCCCCCcCEEEccCCcCCccCCccccccCC-
Q 005038 145 HDLEYVDLSHIKMNGEFPNWLLENNTKLETLFLVNDSLAGP----FRLPIHSHKRLRQLDVSNNNIRGHIPVKIGDVLP- 219 (717)
Q Consensus 145 ~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~----~~~~~~~~~~L~~L~ls~n~i~~~~~~~~~~~l~- 219 (717)
++|++|+++++.+++.....++..+++|++|++++|.+.+. ++..+..+++|++|++++|.+++..+..+...++
T Consensus 3 ~~l~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~ 82 (461)
T 1z7x_W 3 LDIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGDVGVHCVLQGLQT 82 (461)
T ss_dssp EEEEEEEEESCCCCHHHHHHHHHHHTTCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTCCCHHHHHHHHHHTTCS
T ss_pred ccceehhhhhcccCchhHHHHHhhcCCccEEEccCCCCCHHHHHHHHHHHHhCCCcCEEeCCCCcCChHHHHHHHHHHhh
Confidence 35666777777666443344456677777777777776642 3445666778888888888876544545555454
Q ss_pred ---CCcEEECCCCCCCc----cCCccccCCCCCCEEEccCCccccccchhhhh----CCCCCCEEEccCcccCccC----
Q 005038 220 ---SLYVFNNSMNALDG----SIPSSFGNMKFLQILDLSNNHLTGEIPEHLAV----GCVNLQFLALSNNNLQGHL---- 284 (717)
Q Consensus 220 ---~L~~L~l~~n~~~~----~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~----~~~~L~~L~L~~n~i~~~~---- 284 (717)
+|++|++++|.+.. .++..+..+++|++|++++|.+++..+..+.. ..++|++|++++|.+++..
T Consensus 83 ~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l 162 (461)
T 1z7x_W 83 PSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPL 162 (461)
T ss_dssp TTCCCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHH
T ss_pred CCCceeEEEccCCCCCHHHHHHHHHHHccCCceeEEECCCCcCchHHHHHHHHHHhcCCCcceEEECCCCCCCHHHHHHH
Confidence 68888888888774 45778888999999999999887544444332 2457999999988887643
Q ss_pred cccccCCCCCCeEECcCCcCcccCccccc-----CCCCCCEEEccCCcCcCc----CCcccCCCCCCCEEEccCCcccCC
Q 005038 285 FSRNFNLTNLQWLQLEGNRFVGEIPQSLS-----KCSSLEGLYLNNNSLLGK----IPRWLGNLTRLQYIIMPNNHLEGP 355 (717)
Q Consensus 285 ~~~~~~l~~L~~L~L~~n~l~~~~~~~~~-----~l~~L~~L~L~~n~~~~~----~~~~~~~l~~L~~L~l~~n~~~~~ 355 (717)
+..+..+++|++|++++|.+....+..+. ..++|++|++++|.+.+. ++..+..+++|+.|++++|.+.+.
T Consensus 163 ~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~ 242 (461)
T 1z7x_W 163 ASVLRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKLGDV 242 (461)
T ss_dssp HHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHHHSCCCCCEEECTTSCCBTTHHHHHHHHHHHCTTCCEEECCSSBCHHH
T ss_pred HHHHhhCCCCCEEECcCCCcchHHHHHHHHHHhcCCCCceEEEccCCCCcHHHHHHHHHHHHhCCCccEEeccCCcCChH
Confidence 44555678888888888887654443332 356888888888887753 355666778888888888877643
Q ss_pred c-----ccccCCCCCCCEEEccCCcCcccCCCccccccccEEeccCcccccccCccccCCCCcCCEEeCCCCcCCcccch
Q 005038 356 I-----PVEFCQLDSLQILDISDNNISGSLPSCFHPLSIKQVHLSKNMLHGQLKRGTFFNCSSLVTLDLSYNRLNGSIPD 430 (717)
Q Consensus 356 ~-----~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~L~~n~~~~~~~~ 430 (717)
. +..+..+++|++|++++|.++..... .++. .+..+++|++|++++|.+.+..+.
T Consensus 243 ~~~~l~~~~~~~~~~L~~L~L~~n~l~~~~~~-------------------~l~~-~l~~~~~L~~L~Ls~n~i~~~~~~ 302 (461)
T 1z7x_W 243 GMAELCPGLLHPSSRLRTLWIWECGITAKGCG-------------------DLCR-VLRAKESLKELSLAGNELGDEGAR 302 (461)
T ss_dssp HHHHHHHHHTSTTCCCCEEECTTSCCCHHHHH-------------------HHHH-HHHHCTTCCEEECTTCCCHHHHHH
T ss_pred HHHHHHHHHhcCCCCceEEECcCCCCCHHHHH-------------------HHHH-HHhhCCCcceEECCCCCCchHHHH
Confidence 2 22233567788888877776532100 0222 255678888999998888654443
Q ss_pred hhhC-----CCCCcEEEcCCCccccc----cchhccCCCCCCEEEccCCcCccCCCcccccccccccccCCCCCCcchhh
Q 005038 431 WVDG-----LSQLSHLILGHNNLEGE----VSVQLCELNQLQLLDLSNNNLHGPIPPCFDNTTLHESYSNSSSPDEQFEI 501 (717)
Q Consensus 431 ~~~~-----l~~L~~L~L~~n~l~~~----~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 501 (717)
.+.. .++|++|++++|.+++. .+..+..+++|+.|++++|.+++..+..+...-
T Consensus 303 ~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l----------------- 365 (461)
T 1z7x_W 303 LLCETLLEPGCQLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQISNNRLEDAGVRELCQGL----------------- 365 (461)
T ss_dssp HHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCSSCCEEECCSSBCHHHHHHHHHHHH-----------------
T ss_pred HHHHHhccCCccceeeEcCCCCCchHHHHHHHHHHhhCCCccEEEccCCccccccHHHHHHHH-----------------
Confidence 3332 36888999998888765 345566778888888888887643322211100
Q ss_pred hhhcccccccccccccceEEEeeccceeeeccccccccceeeCCCCccCC----CCcccccCCccCCeEeCCCcccCCCC
Q 005038 502 FFSIEGHQGFLEKQNHEIFEFTTKNIAYIYQGKVLSLLSGLDLSCNKLIG----HIPPQIGNLTRIQTLNLSHNNLTGSI 577 (717)
Q Consensus 502 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~----~~~~~l~~l~~L~~L~Ls~n~l~~~~ 577 (717)
....+.|++|++++|++++ .+|..+..+++|++|++++|++++..
T Consensus 366 -------------------------------~~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~l~~N~i~~~~ 414 (461)
T 1z7x_W 366 -------------------------------GQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGDAG 414 (461)
T ss_dssp -------------------------------TSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCCCCCEEECCSSSCCHHH
T ss_pred -------------------------------cCCCCceEEEECCCCCCChhhHHHHHHHHHhCCCccEEECCCCCCCHHH
Confidence 0012357777777777764 45666667777777777777776431
Q ss_pred CcC----C-CCCCCCCEEECCCCcCCccCch
Q 005038 578 PST----F-SNLKHVESLDLSNNKLNGKIPH 603 (717)
Q Consensus 578 p~~----~-~~l~~L~~L~L~~N~i~~~~p~ 603 (717)
... + .....|+.|++.++.+....++
T Consensus 415 ~~~l~~~l~~~~~~L~~L~~~~~~~~~~~~~ 445 (461)
T 1z7x_W 415 ILQLVESVRQPGCLLEQLVLYDIYWSEEMED 445 (461)
T ss_dssp HHHHHHHHTSTTCCCCEEECTTCCCCHHHHH
T ss_pred HHHHHHHhccCCcchhheeecccccCHHHHH
Confidence 111 1 1234566777776666544333
No 48
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.97 E-value=1.2e-29 Score=260.28 Aligned_cols=267 Identities=18% Similarity=0.213 Sum_probs=161.2
Q ss_pred CCCEEEccCCcCcCcCCcccCCCCCCCEEEccCCcccCCcccccCCCCCCCEEEccCCcCcccCCCccccccccEEeccC
Q 005038 317 SLEGLYLNNNSLLGKIPRWLGNLTRLQYIIMPNNHLEGPIPVEFCQLDSLQILDISDNNISGSLPSCFHPLSIKQVHLSK 396 (717)
Q Consensus 317 ~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~L~~L~l~~ 396 (717)
++++|++++|.+++..+..|..+++|++|++++|.+++..|..+..+++|++|++++|.+.......+ .+|+.|++++
T Consensus 53 ~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~l~~~~~--~~L~~L~l~~ 130 (330)
T 1xku_A 53 DTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQLKELPEKMP--KTLQELRVHE 130 (330)
T ss_dssp TCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCSBCCSSCC--TTCCEEECCS
T ss_pred CCeEEECCCCcCCEeChhhhccCCCCCEEECCCCcCCeeCHHHhcCCCCCCEEECCCCcCCccChhhc--ccccEEECCC
Confidence 34444444444443333344444444444444444444444444444444444444444432111111 2344444444
Q ss_pred cccccccCccccCCCCcCCEEeCCCCcCCc--ccchhhhCCCCCcEEEcCCCccccccchhccCCCCCCEEEccCCcCcc
Q 005038 397 NMLHGQLKRGTFFNCSSLVTLDLSYNRLNG--SIPDWVDGLSQLSHLILGHNNLEGEVSVQLCELNQLQLLDLSNNNLHG 474 (717)
Q Consensus 397 n~~~~~~~~~~~~~~~~L~~L~L~~n~~~~--~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~ 474 (717)
|.+. .++...|..+++|++|++++|.+.. ..+..+.++++|++|++++|.++.. |..+. ++|+.|++++|.+++
T Consensus 131 n~l~-~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~l-~~~~~--~~L~~L~l~~n~l~~ 206 (330)
T 1xku_A 131 NEIT-KVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNITTI-PQGLP--PSLTELHLDGNKITK 206 (330)
T ss_dssp SCCC-BBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSSCCCSC-CSSCC--TTCSEEECTTSCCCE
T ss_pred Cccc-ccCHhHhcCCccccEEECCCCcCCccCcChhhccCCCCcCEEECCCCccccC-Ccccc--ccCCEEECCCCcCCc
Confidence 4442 2333346777888888888887753 5566777788888888888887743 33322 678888888888776
Q ss_pred CCCcccccccccccccCCCCCCcchhhhhhcccccccccccccceEEEeeccceeeeccccccccceeeCCCCccCCCCc
Q 005038 475 PIPPCFDNTTLHESYSNSSSPDEQFEIFFSIEGHQGFLEKQNHEIFEFTTKNIAYIYQGKVLSLLSGLDLSCNKLIGHIP 554 (717)
Q Consensus 475 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~ 554 (717)
..|..+..++ +|+.|++++|++++..+
T Consensus 207 ~~~~~~~~l~-----------------------------------------------------~L~~L~Ls~n~l~~~~~ 233 (330)
T 1xku_A 207 VDAASLKGLN-----------------------------------------------------NLAKLGLSFNSISAVDN 233 (330)
T ss_dssp ECTGGGTTCT-----------------------------------------------------TCCEEECCSSCCCEECT
T ss_pred cCHHHhcCCC-----------------------------------------------------CCCEEECCCCcCceeCh
Confidence 6665554432 67888888888877666
Q ss_pred ccccCCccCCeEeCCCcccCCCCCcCCCCCCCCCEEECCCCcCCccCchhhcC------CCCCCEEeccCCcCee--cCC
Q 005038 555 PQIGNLTRIQTLNLSHNNLTGSIPSTFSNLKHVESLDLSNNKLNGKIPHQLVE------LKTLEVFSVAYNNLSG--EIP 626 (717)
Q Consensus 555 ~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~N~i~~~~p~~~~~------l~~L~~L~l~~N~l~~--~~p 626 (717)
..+..+++|++|+|++|+++ .+|..+..+++|++|++++|++++..+..|.. ...|+.|++++|++.. ..|
T Consensus 234 ~~~~~l~~L~~L~L~~N~l~-~lp~~l~~l~~L~~L~l~~N~i~~~~~~~f~~~~~~~~~~~l~~l~l~~N~~~~~~i~~ 312 (330)
T 1xku_A 234 GSLANTPHLRELHLNNNKLV-KVPGGLADHKYIQVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQYWEIQP 312 (330)
T ss_dssp TTGGGSTTCCEEECCSSCCS-SCCTTTTTCSSCCEEECCSSCCCCCCTTSSSCSSCCTTSCCCSEEECCSSSSCGGGSCG
T ss_pred hhccCCCCCCEEECCCCcCc-cCChhhccCCCcCEEECCCCcCCccChhhcCCcccccccccccceEeecCcccccccCc
Confidence 67778888888888888887 66777777888888888888887666555543 3667788888887763 334
Q ss_pred CCCcccCCCCcccccCC
Q 005038 627 EWKAQFATFNESSYEGN 643 (717)
Q Consensus 627 ~~~~~~~~l~~~~~~~n 643 (717)
..+..+..++.+.+++|
T Consensus 313 ~~f~~~~~l~~l~L~~N 329 (330)
T 1xku_A 313 STFRCVYVRAAVQLGNY 329 (330)
T ss_dssp GGGTTCCCGGGEEC---
T ss_pred cccccccceeEEEeccc
Confidence 44555556666666655
No 49
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.96 E-value=2.3e-28 Score=261.04 Aligned_cols=252 Identities=23% Similarity=0.253 Sum_probs=203.8
Q ss_pred CCCeEECcCCcCcccCcccccCCCCCCEEEccCCcCcCcCCcccCCCCCCCEEEccCCcccCCcccccCCCCCCCEEEcc
Q 005038 293 NLQWLQLEGNRFVGEIPQSLSKCSSLEGLYLNNNSLLGKIPRWLGNLTRLQYIIMPNNHLEGPIPVEFCQLDSLQILDIS 372 (717)
Q Consensus 293 ~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~ 372 (717)
..+.++.++..++ .+|..+. ++++.|++++|.+.+..+..|..+++|+.|++++|.+.+..+..|.++++|++|+++
T Consensus 44 ~~~~v~c~~~~l~-~iP~~~~--~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~ 120 (440)
T 3zyj_A 44 QFSKVICVRKNLR-EVPDGIS--TNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELF 120 (440)
T ss_dssp TSCEEECCSCCCS-SCCSCCC--TTCSEEECCSCCCCEECTTTTSSCSSCCEEECCSSCCCEECGGGGTTCSSCCEEECC
T ss_pred CCCEEEeCCCCcC-cCCCCCC--CCCcEEEccCCcCCeeCHHHhhCCCCCCEEECCCCcCCccChhhccCCccCCEEECC
Confidence 3567777777777 4555444 578888888888887777788888888888888888887777788888888888888
Q ss_pred CCcCcccCCCccccccccEEeccCcccccccCccccCCCCcCCEEeCCCCcCCcccchhhhCCCCCcEEEcCCC-ccccc
Q 005038 373 DNNISGSLPSCFHPLSIKQVHLSKNMLHGQLKRGTFFNCSSLVTLDLSYNRLNGSIPDWVDGLSQLSHLILGHN-NLEGE 451 (717)
Q Consensus 373 ~n~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~L~~n-~l~~~ 451 (717)
+|+++. ++...|..+++|++|++++|.+....+..|..+++|++|++++| .+...
T Consensus 121 ~n~l~~------------------------~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~l~~~~~l~~i 176 (440)
T 3zyj_A 121 DNRLTT------------------------IPNGAFVYLSKLKELWLRNNPIESIPSYAFNRIPSLRRLDLGELKRLSYI 176 (440)
T ss_dssp SSCCSS------------------------CCTTTSCSCSSCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEE
T ss_pred CCcCCe------------------------eCHhHhhccccCceeeCCCCcccccCHHHhhhCcccCEeCCCCCCCccee
Confidence 887763 33344778899999999999998777778889999999999984 55555
Q ss_pred cchhccCCCCCCEEEccCCcCccCCCcccccccccccccCCCCCCcchhhhhhcccccccccccccceEEEeeccceeee
Q 005038 452 VSVQLCELNQLQLLDLSNNNLHGPIPPCFDNTTLHESYSNSSSPDEQFEIFFSIEGHQGFLEKQNHEIFEFTTKNIAYIY 531 (717)
Q Consensus 452 ~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 531 (717)
.+..|..+++|+.|++++|.++.. |. +.
T Consensus 177 ~~~~~~~l~~L~~L~L~~n~l~~~-~~-~~-------------------------------------------------- 204 (440)
T 3zyj_A 177 SEGAFEGLSNLRYLNLAMCNLREI-PN-LT-------------------------------------------------- 204 (440)
T ss_dssp CTTTTTTCSSCCEEECTTSCCSSC-CC-CT--------------------------------------------------
T ss_pred CcchhhcccccCeecCCCCcCccc-cc-cC--------------------------------------------------
Confidence 566788899999999999988633 21 11
Q ss_pred ccccccccceeeCCCCccCCCCcccccCCccCCeEeCCCcccCCCCCcCCCCCCCCCEEECCCCcCCccCchhhcCCCCC
Q 005038 532 QGKVLSLLSGLDLSCNKLIGHIPPQIGNLTRIQTLNLSHNNLTGSIPSTFSNLKHVESLDLSNNKLNGKIPHQLVELKTL 611 (717)
Q Consensus 532 ~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~N~i~~~~p~~~~~l~~L 611 (717)
.+++|+.|+|++|++++..|..|.++++|++|+|++|++++..+..|.++++|++|+|++|++++..++.+..+++|
T Consensus 205 ---~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L 281 (440)
T 3zyj_A 205 ---PLIKLDELDLSGNHLSAIRPGSFQGLMHLQKLWMIQSQIQVIERNAFDNLQSLVEINLAHNNLTLLPHDLFTPLHHL 281 (440)
T ss_dssp ---TCSSCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTSSTTCTTCCEEECTTSCCCCCCTTTTSSCTTC
T ss_pred ---CCcccCEEECCCCccCccChhhhccCccCCEEECCCCceeEEChhhhcCCCCCCEEECCCCCCCccChhHhccccCC
Confidence 23478999999999988888889999999999999999998888889999999999999999997777788889999
Q ss_pred CEEeccCCcCeecCC
Q 005038 612 EVFSVAYNNLSGEIP 626 (717)
Q Consensus 612 ~~L~l~~N~l~~~~p 626 (717)
+.|++++|++.+.+.
T Consensus 282 ~~L~L~~Np~~CdC~ 296 (440)
T 3zyj_A 282 ERIHLHHNPWNCNCD 296 (440)
T ss_dssp CEEECCSSCEECSST
T ss_pred CEEEcCCCCccCCCC
Confidence 999999999987654
No 50
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.96 E-value=3e-28 Score=261.07 Aligned_cols=252 Identities=21% Similarity=0.219 Sum_probs=204.4
Q ss_pred CCCeEECcCCcCcccCcccccCCCCCCEEEccCCcCcCcCCcccCCCCCCCEEEccCCcccCCcccccCCCCCCCEEEcc
Q 005038 293 NLQWLQLEGNRFVGEIPQSLSKCSSLEGLYLNNNSLLGKIPRWLGNLTRLQYIIMPNNHLEGPIPVEFCQLDSLQILDIS 372 (717)
Q Consensus 293 ~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~ 372 (717)
....++.++..++ .+|..+. +++++|++++|.+.+..+..|..+++|+.|++++|.+.+..+..|.++++|++|+++
T Consensus 55 ~~~~v~c~~~~l~-~iP~~~~--~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~ 131 (452)
T 3zyi_A 55 QFSKVVCTRRGLS-EVPQGIP--SNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELF 131 (452)
T ss_dssp SSCEEECCSSCCS-SCCSCCC--TTCSEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECC
T ss_pred CCcEEEECCCCcC-ccCCCCC--CCccEEECcCCcCceECHHHcCCCCCCCEEECCCCccCCcChhhccCcccCCEEECC
Confidence 3466777777776 4555443 578888888888887777788888888888888888887777788888888888888
Q ss_pred CCcCcccCCCccccccccEEeccCcccccccCccccCCCCcCCEEeCCCCcCCcccchhhhCCCCCcEEEcCC-Cccccc
Q 005038 373 DNNISGSLPSCFHPLSIKQVHLSKNMLHGQLKRGTFFNCSSLVTLDLSYNRLNGSIPDWVDGLSQLSHLILGH-NNLEGE 451 (717)
Q Consensus 373 ~n~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~L~~-n~l~~~ 451 (717)
+|.+.. ++...|..+++|++|++++|.+....+..|.++++|+.|++++ +.+...
T Consensus 132 ~n~l~~------------------------~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~~~~l~~i 187 (452)
T 3zyi_A 132 DNWLTV------------------------IPSGAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLMRLDLGELKKLEYI 187 (452)
T ss_dssp SSCCSB------------------------CCTTTSSSCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEE
T ss_pred CCcCCc------------------------cChhhhcccCCCCEEECCCCCcceeCHhHHhcCCcccEEeCCCCCCcccc
Confidence 887763 3334477889999999999999977777889999999999998 456655
Q ss_pred cchhccCCCCCCEEEccCCcCccCCCcccccccccccccCCCCCCcchhhhhhcccccccccccccceEEEeeccceeee
Q 005038 452 VSVQLCELNQLQLLDLSNNNLHGPIPPCFDNTTLHESYSNSSSPDEQFEIFFSIEGHQGFLEKQNHEIFEFTTKNIAYIY 531 (717)
Q Consensus 452 ~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 531 (717)
.+..+..+++|++|++++|.+++. |. +.
T Consensus 188 ~~~~~~~l~~L~~L~L~~n~l~~~-~~-~~-------------------------------------------------- 215 (452)
T 3zyi_A 188 SEGAFEGLFNLKYLNLGMCNIKDM-PN-LT-------------------------------------------------- 215 (452)
T ss_dssp CTTTTTTCTTCCEEECTTSCCSSC-CC-CT--------------------------------------------------
T ss_pred ChhhccCCCCCCEEECCCCccccc-cc-cc--------------------------------------------------
Confidence 566788999999999999988753 21 11
Q ss_pred ccccccccceeeCCCCccCCCCcccccCCccCCeEeCCCcccCCCCCcCCCCCCCCCEEECCCCcCCccCchhhcCCCCC
Q 005038 532 QGKVLSLLSGLDLSCNKLIGHIPPQIGNLTRIQTLNLSHNNLTGSIPSTFSNLKHVESLDLSNNKLNGKIPHQLVELKTL 611 (717)
Q Consensus 532 ~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~N~i~~~~p~~~~~l~~L 611 (717)
.+++|+.|+|++|++++..|..|.++++|++|+|++|++++..|..|.++++|++|+|++|++++..++.+..+++|
T Consensus 216 ---~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L 292 (452)
T 3zyi_A 216 ---PLVGLEELEMSGNHFPEIRPGSFHGLSSLKKLWVMNSQVSLIERNAFDGLASLVELNLAHNNLSSLPHDLFTPLRYL 292 (452)
T ss_dssp ---TCTTCCEEECTTSCCSEECGGGGTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTSSTTCTTC
T ss_pred ---ccccccEEECcCCcCcccCcccccCccCCCEEEeCCCcCceECHHHhcCCCCCCEEECCCCcCCccChHHhccccCC
Confidence 23479999999999998888899999999999999999998888889999999999999999997777788889999
Q ss_pred CEEeccCCcCeecCC
Q 005038 612 EVFSVAYNNLSGEIP 626 (717)
Q Consensus 612 ~~L~l~~N~l~~~~p 626 (717)
+.|++++|++.+.+.
T Consensus 293 ~~L~L~~Np~~CdC~ 307 (452)
T 3zyi_A 293 VELHLHHNPWNCDCD 307 (452)
T ss_dssp CEEECCSSCEECSTT
T ss_pred CEEEccCCCcCCCCC
Confidence 999999999987654
No 51
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.96 E-value=1.2e-28 Score=255.40 Aligned_cols=208 Identities=25% Similarity=0.248 Sum_probs=141.5
Q ss_pred CCCCCEEEccCCccccccchhhhhCCCCCCEEEccCcccCccCcccccCCCCCCeEECcCCcCcccCcccccCCCCCCEE
Q 005038 242 MKFLQILDLSNNHLTGEIPEHLAVGCVNLQFLALSNNNLQGHLFSRNFNLTNLQWLQLEGNRFVGEIPQSLSKCSSLEGL 321 (717)
Q Consensus 242 l~~L~~L~Ls~n~l~~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L 321 (717)
++.....+.+++.++ .+|..+. ++|++|++++|.+++..+..+.++++|++|++++|.+.+..+..|..+++|++|
T Consensus 30 C~~~~~c~~~~~~l~-~iP~~~~---~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L 105 (353)
T 2z80_A 30 CDRNGICKGSSGSLN-SIPSGLT---EAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHL 105 (353)
T ss_dssp ECTTSEEECCSTTCS-SCCTTCC---TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEE
T ss_pred CCCCeEeeCCCCCcc-ccccccc---ccCcEEECCCCcCcccCHHHhccCCCCCEEECCCCccCccCHhhcCCCCCCCEE
Confidence 344445666777776 6666542 467777777777776655567777777777777777776666667777777777
Q ss_pred EccCCcCcCcCCcccCCCCCCCEEEccCCcccCCcc-cccCCCCCCCEEEccCCc-CcccCCCccccccccEEeccCccc
Q 005038 322 YLNNNSLLGKIPRWLGNLTRLQYIIMPNNHLEGPIP-VEFCQLDSLQILDISDNN-ISGSLPSCFHPLSIKQVHLSKNML 399 (717)
Q Consensus 322 ~L~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~-~~~~~l~~L~~L~l~~n~-~~~~~~~~~~~~~L~~L~l~~n~~ 399 (717)
++++|.+++..+..|..+++|++|++++|.+++..+ ..+..+++|++|++++|. +.
T Consensus 106 ~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~~l~~L~~L~l~~n~~~~---------------------- 163 (353)
T 2z80_A 106 DLSYNYLSNLSSSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMDTFT---------------------- 163 (353)
T ss_dssp ECCSSCCSSCCHHHHTTCTTCSEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCC----------------------
T ss_pred ECCCCcCCcCCHhHhCCCccCCEEECCCCCCcccCchhhhccCCCCcEEECCCCcccc----------------------
Confidence 777777765444446677777777777777765433 356677777777777663 32
Q ss_pred ccccCccccCCCCcCCEEeCCCCcCCcccchhhhCCCCCcEEEcCCCccccccchhccCCCCCCEEEccCCcCccCCC
Q 005038 400 HGQLKRGTFFNCSSLVTLDLSYNRLNGSIPDWVDGLSQLSHLILGHNNLEGEVSVQLCELNQLQLLDLSNNNLHGPIP 477 (717)
Q Consensus 400 ~~~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~ 477 (717)
.++...|..+++|++|++++|.+.+..|..+..+++|++|++++|+++......+..+++|+.|++++|.+++..+
T Consensus 164 --~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~ 239 (353)
T 2z80_A 164 --KIQRKDFAGLTFLEELEIDASDLQSYEPKSLKSIQNVSHLILHMKQHILLLEIFVDVTSSVECLELRDTDLDTFHF 239 (353)
T ss_dssp --EECTTTTTTCCEEEEEEEEETTCCEECTTTTTTCSEEEEEEEECSCSTTHHHHHHHHTTTEEEEEEESCBCTTCCC
T ss_pred --ccCHHHccCCCCCCEEECCCCCcCccCHHHHhccccCCeecCCCCccccchhhhhhhcccccEEECCCCccccccc
Confidence 2223336677778888888888777777777788888888888888765554445567788888888887765443
No 52
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.96 E-value=2.6e-28 Score=247.53 Aligned_cols=251 Identities=22% Similarity=0.272 Sum_probs=196.8
Q ss_pred CeEECcCCcCcccCcccccCCCCCCEEEccCCcCcCcCCcccCCCCCCCEEEccCCcccCC--cccccCCCCCCCEEEcc
Q 005038 295 QWLQLEGNRFVGEIPQSLSKCSSLEGLYLNNNSLLGKIPRWLGNLTRLQYIIMPNNHLEGP--IPVEFCQLDSLQILDIS 372 (717)
Q Consensus 295 ~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~--~~~~~~~l~~L~~L~l~ 372 (717)
+.++.+++.++ .+|..+. +++++|++++|.+....+..|..+++|+.|++++|.+... .+..+..+++|++|+++
T Consensus 10 ~~l~c~~~~l~-~ip~~~~--~~l~~L~L~~n~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~Ls 86 (306)
T 2z66_A 10 TEIRCNSKGLT-SVPTGIP--SSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLS 86 (306)
T ss_dssp TEEECCSSCCS-SCCSCCC--TTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCEEEEEEHHHHSCSCCCEEECC
T ss_pred CEEEcCCCCcc-cCCCCCC--CCCCEEECCCCccCccCHhHhhccccCCEEECCCCccCcccCcccccccccccCEEECC
Confidence 46677777666 3444332 5777777777777744444567777777777777776632 24455566777777777
Q ss_pred CCcCcccCCCccccccccEEeccCcccccccCccccCCCCcCCEEeCCCCcCCcccc-hhhhCCCCCcEEEcCCCccccc
Q 005038 373 DNNISGSLPSCFHPLSIKQVHLSKNMLHGQLKRGTFFNCSSLVTLDLSYNRLNGSIP-DWVDGLSQLSHLILGHNNLEGE 451 (717)
Q Consensus 373 ~n~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~L~~n~~~~~~~-~~~~~l~~L~~L~L~~n~l~~~ 451 (717)
+|.+. .++.. +..+++|++|++++|.+.+..+ ..+..+++|++|++++|.+.+.
T Consensus 87 ~n~i~------------------------~l~~~-~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~ 141 (306)
T 2z66_A 87 FNGVI------------------------TMSSN-FLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVA 141 (306)
T ss_dssp SCSEE------------------------EEEEE-EETCTTCCEEECTTSEEESSTTTTTTTTCTTCCEEECTTSCCEEC
T ss_pred CCccc------------------------cChhh-cCCCCCCCEEECCCCcccccccchhhhhccCCCEEECCCCcCCcc
Confidence 77654 22233 6778999999999999986654 5788899999999999999988
Q ss_pred cchhccCCCCCCEEEccCCcCcc-CCCcccccccccccccCCCCCCcchhhhhhcccccccccccccceEEEeeccceee
Q 005038 452 VSVQLCELNQLQLLDLSNNNLHG-PIPPCFDNTTLHESYSNSSSPDEQFEIFFSIEGHQGFLEKQNHEIFEFTTKNIAYI 530 (717)
Q Consensus 452 ~~~~l~~l~~L~~L~L~~n~l~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 530 (717)
.+..+..+++|++|++++|.+.+ ..|..+..+
T Consensus 142 ~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l----------------------------------------------- 174 (306)
T 2z66_A 142 FNGIFNGLSSLEVLKMAGNSFQENFLPDIFTEL----------------------------------------------- 174 (306)
T ss_dssp STTTTTTCTTCCEEECTTCEEGGGEECSCCTTC-----------------------------------------------
T ss_pred chhhcccCcCCCEEECCCCccccccchhHHhhC-----------------------------------------------
Confidence 88889999999999999999876 455555443
Q ss_pred eccccccccceeeCCCCccCCCCcccccCCccCCeEeCCCcccCCCCCcCCCCCCCCCEEECCCCcCCccCchhhcCCC-
Q 005038 531 YQGKVLSLLSGLDLSCNKLIGHIPPQIGNLTRIQTLNLSHNNLTGSIPSTFSNLKHVESLDLSNNKLNGKIPHQLVELK- 609 (717)
Q Consensus 531 ~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~N~i~~~~p~~~~~l~- 609 (717)
++|+.|++++|++++..|..+..+++|++|++++|++++..+..+..+++|++|++++|++++..|..+..++
T Consensus 175 ------~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~ 248 (306)
T 2z66_A 175 ------RNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPS 248 (306)
T ss_dssp ------TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCSBCCSGGGTTCTTCCEEECTTSCCCBCSSSSCCCCCT
T ss_pred ------cCCCEEECCCCCcCCcCHHHhcCCCCCCEEECCCCccCccChhhccCcccCCEeECCCCCCcccCHHHHHhhhc
Confidence 3799999999999988888899999999999999999987777889999999999999999988888888884
Q ss_pred CCCEEeccCCcCeecCC
Q 005038 610 TLEVFSVAYNNLSGEIP 626 (717)
Q Consensus 610 ~L~~L~l~~N~l~~~~p 626 (717)
+|++|++++|++++..+
T Consensus 249 ~L~~L~L~~N~~~~~c~ 265 (306)
T 2z66_A 249 SLAFLNLTQNDFACTCE 265 (306)
T ss_dssp TCCEEECTTCCEECSGG
T ss_pred cCCEEEccCCCeecccC
Confidence 89999999999987654
No 53
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.95 E-value=1.9e-28 Score=253.78 Aligned_cols=279 Identities=19% Similarity=0.203 Sum_probs=221.2
Q ss_pred CCCCCEEEccCcccCccCcccccCCCCCCeEECcCCcCcccCcccccCCCCCCEEEccCCcCcCcCCcccCCCCCCCEEE
Q 005038 267 CVNLQFLALSNNNLQGHLFSRNFNLTNLQWLQLEGNRFVGEIPQSLSKCSSLEGLYLNNNSLLGKIPRWLGNLTRLQYII 346 (717)
Q Consensus 267 ~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~ 346 (717)
|+.....+.+++.++. +|..+. ++|++|++++|.+.+..+..+..+++|++|++++|.+.+..+..|..+++|++|+
T Consensus 30 C~~~~~c~~~~~~l~~-iP~~~~--~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ 106 (353)
T 2z80_A 30 CDRNGICKGSSGSLNS-IPSGLT--EAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLD 106 (353)
T ss_dssp ECTTSEEECCSTTCSS-CCTTCC--TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEE
T ss_pred CCCCeEeeCCCCCccc-cccccc--ccCcEEECCCCcCcccCHHHhccCCCCCEEECCCCccCccCHhhcCCCCCCCEEE
Confidence 5566678888888874 455443 5889999999988877666888899999999999988877777888889999999
Q ss_pred ccCCcccCCcccccCCCCCCCEEEccCCcCcccCCCccccccccEEeccCcccccccCc-cccCCCCcCCEEeCCCC-cC
Q 005038 347 MPNNHLEGPIPVEFCQLDSLQILDISDNNISGSLPSCFHPLSIKQVHLSKNMLHGQLKR-GTFFNCSSLVTLDLSYN-RL 424 (717)
Q Consensus 347 l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~-~~~~~~~~L~~L~L~~n-~~ 424 (717)
+++|.+++..+..+..+++|++|++++|++.+ ++. ..|..+++|++|++++| .+
T Consensus 107 Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~------------------------l~~~~~~~~l~~L~~L~l~~n~~~ 162 (353)
T 2z80_A 107 LSYNYLSNLSSSWFKPLSSLTFLNLLGNPYKT------------------------LGETSLFSHLTKLQILRVGNMDTF 162 (353)
T ss_dssp CCSSCCSSCCHHHHTTCTTCSEEECTTCCCSS------------------------SCSSCSCTTCTTCCEEEEEESSSC
T ss_pred CCCCcCCcCCHhHhCCCccCCEEECCCCCCcc------------------------cCchhhhccCCCCcEEECCCCccc
Confidence 99998887666668888888888888887763 222 34778899999999998 47
Q ss_pred CcccchhhhCCCCCcEEEcCCCccccccchhccCCCCCCEEEccCCcCccCCCcccccccccccccCCCCCCcchhhhhh
Q 005038 425 NGSIPDWVDGLSQLSHLILGHNNLEGEVSVQLCELNQLQLLDLSNNNLHGPIPPCFDNTTLHESYSNSSSPDEQFEIFFS 504 (717)
Q Consensus 425 ~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 504 (717)
.+..+..+.++++|++|++++|++++..+..+..+++|++|++++|.+....+..+.
T Consensus 163 ~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~----------------------- 219 (353)
T 2z80_A 163 TKIQRKDFAGLTFLEELEIDASDLQSYEPKSLKSIQNVSHLILHMKQHILLLEIFVD----------------------- 219 (353)
T ss_dssp CEECTTTTTTCCEEEEEEEEETTCCEECTTTTTTCSEEEEEEEECSCSTTHHHHHHH-----------------------
T ss_pred cccCHHHccCCCCCCEEECCCCCcCccCHHHHhccccCCeecCCCCccccchhhhhh-----------------------
Confidence 766677899999999999999999988899999999999999999987532221111
Q ss_pred cccccccccccccceEEEeeccceeeeccccccccceeeCCCCccCCCCccccc---CCccCCeEeCCCcccCC----CC
Q 005038 505 IEGHQGFLEKQNHEIFEFTTKNIAYIYQGKVLSLLSGLDLSCNKLIGHIPPQIG---NLTRIQTLNLSHNNLTG----SI 577 (717)
Q Consensus 505 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~---~l~~L~~L~Ls~n~l~~----~~ 577 (717)
.+++|+.|++++|++++..+..+. ..+.++.++++++.+++ .+
T Consensus 220 ------------------------------~~~~L~~L~L~~n~l~~~~~~~l~~~~~~~~l~~l~L~~~~l~~~~l~~l 269 (353)
T 2z80_A 220 ------------------------------VTSSVECLELRDTDLDTFHFSELSTGETNSLIKKFTFRNVKITDESLFQV 269 (353)
T ss_dssp ------------------------------HTTTEEEEEEESCBCTTCCCC------CCCCCCEEEEESCBCCHHHHHHH
T ss_pred ------------------------------hcccccEEECCCCccccccccccccccccchhhccccccccccCcchhhh
Confidence 134799999999999876554433 35667788888777764 36
Q ss_pred CcCCCCCCCCCEEECCCCcCCccCchh-hcCCCCCCEEeccCCcCeecCC
Q 005038 578 PSTFSNLKHVESLDLSNNKLNGKIPHQ-LVELKTLEVFSVAYNNLSGEIP 626 (717)
Q Consensus 578 p~~~~~l~~L~~L~L~~N~i~~~~p~~-~~~l~~L~~L~l~~N~l~~~~p 626 (717)
|+.+..+++|++|++++|+++ .+|.. |..+++|++|++++|++.+.+|
T Consensus 270 ~~~l~~l~~L~~L~Ls~N~l~-~i~~~~~~~l~~L~~L~L~~N~~~~~~~ 318 (353)
T 2z80_A 270 MKLLNQISGLLELEFSRNQLK-SVPDGIFDRLTSLQKIWLHTNPWDCSCP 318 (353)
T ss_dssp HHHHHTCTTCCEEECCSSCCC-CCCTTTTTTCTTCCEEECCSSCBCCCHH
T ss_pred HHHHhcccCCCEEECCCCCCC-ccCHHHHhcCCCCCEEEeeCCCccCcCC
Confidence 677888999999999999998 45554 6889999999999999998876
No 54
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.95 E-value=9.4e-28 Score=243.43 Aligned_cols=280 Identities=22% Similarity=0.247 Sum_probs=226.4
Q ss_pred CCEEEccCcccCccCcccccCCCCCCeEECcCCcCcccCcccccCCCCCCEEEccCCcCcCc--CCcccCCCCCCCEEEc
Q 005038 270 LQFLALSNNNLQGHLFSRNFNLTNLQWLQLEGNRFVGEIPQSLSKCSSLEGLYLNNNSLLGK--IPRWLGNLTRLQYIIM 347 (717)
Q Consensus 270 L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~--~~~~~~~l~~L~~L~l 347 (717)
-+.++.+++.++. +|..+. ++|++|++++|.+....+..|..+++|++|++++|.+... .+..+..+++|+.|++
T Consensus 9 ~~~l~c~~~~l~~-ip~~~~--~~l~~L~L~~n~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~L 85 (306)
T 2z66_A 9 GTEIRCNSKGLTS-VPTGIP--SSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDL 85 (306)
T ss_dssp TTEEECCSSCCSS-CCSCCC--TTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCEEEEEEHHHHSCSCCCEEEC
T ss_pred CCEEEcCCCCccc-CCCCCC--CCCCEEECCCCccCccCHhHhhccccCCEEECCCCccCcccCcccccccccccCEEEC
Confidence 3578888888874 444443 6899999999999966666789999999999999998743 2566778999999999
Q ss_pred cCCcccCCcccccCCCCCCCEEEccCCcCcccCCCccccccccEEeccCcccccccCccccCCCCcCCEEeCCCCcCCcc
Q 005038 348 PNNHLEGPIPVEFCQLDSLQILDISDNNISGSLPSCFHPLSIKQVHLSKNMLHGQLKRGTFFNCSSLVTLDLSYNRLNGS 427 (717)
Q Consensus 348 ~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~L~~n~~~~~ 427 (717)
++|.+.. ++..+..+++|++|++++|.+.+..+ ...+..+++|++|++++|.+.+.
T Consensus 86 s~n~i~~-l~~~~~~l~~L~~L~l~~n~l~~~~~-----------------------~~~~~~l~~L~~L~l~~n~l~~~ 141 (306)
T 2z66_A 86 SFNGVIT-MSSNFLGLEQLEHLDFQHSNLKQMSE-----------------------FSVFLSLRNLIYLDISHTHTRVA 141 (306)
T ss_dssp CSCSEEE-EEEEEETCTTCCEEECTTSEEESSTT-----------------------TTTTTTCTTCCEEECTTSCCEEC
T ss_pred CCCcccc-ChhhcCCCCCCCEEECCCCccccccc-----------------------chhhhhccCCCEEECCCCcCCcc
Confidence 9999984 66678899999999999998864321 12377788999999999999888
Q ss_pred cchhhhCCCCCcEEEcCCCcccc-ccchhccCCCCCCEEEccCCcCccCCCcccccccccccccCCCCCCcchhhhhhcc
Q 005038 428 IPDWVDGLSQLSHLILGHNNLEG-EVSVQLCELNQLQLLDLSNNNLHGPIPPCFDNTTLHESYSNSSSPDEQFEIFFSIE 506 (717)
Q Consensus 428 ~~~~~~~l~~L~~L~L~~n~l~~-~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 506 (717)
.+..+.++++|++|++++|.+++ ..|..+..+++|+.|++++|.+++..|..+..++
T Consensus 142 ~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~---------------------- 199 (306)
T 2z66_A 142 FNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLS---------------------- 199 (306)
T ss_dssp STTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCT----------------------
T ss_pred chhhcccCcCCCEEECCCCccccccchhHHhhCcCCCEEECCCCCcCCcCHHHhcCCC----------------------
Confidence 88889999999999999999986 5788899999999999999999887776665533
Q ss_pred cccccccccccceEEEeeccceeeeccccccccceeeCCCCccCCCCcccccCCccCCeEeCCCcccCCCCCcCCCCCC-
Q 005038 507 GHQGFLEKQNHEIFEFTTKNIAYIYQGKVLSLLSGLDLSCNKLIGHIPPQIGNLTRIQTLNLSHNNLTGSIPSTFSNLK- 585 (717)
Q Consensus 507 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~- 585 (717)
+|+.|++++|++++..+..+..+++|++|++++|++++..|..+..++
T Consensus 200 -------------------------------~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~ 248 (306)
T 2z66_A 200 -------------------------------SLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPS 248 (306)
T ss_dssp -------------------------------TCCEEECTTSCCSBCCSGGGTTCTTCCEEECTTSCCCBCSSSSCCCCCT
T ss_pred -------------------------------CCCEEECCCCccCccChhhccCcccCCEeECCCCCCcccCHHHHHhhhc
Confidence 799999999999988777899999999999999999999999999985
Q ss_pred CCCEEECCCCcCCccCch--hhcCCCCCCEEeccCCcCeecCCCCC
Q 005038 586 HVESLDLSNNKLNGKIPH--QLVELKTLEVFSVAYNNLSGEIPEWK 629 (717)
Q Consensus 586 ~L~~L~L~~N~i~~~~p~--~~~~l~~L~~L~l~~N~l~~~~p~~~ 629 (717)
+|++|++++|++++..+. ...-+...+.+.+..+.+.+..|..+
T Consensus 249 ~L~~L~L~~N~~~~~c~~~~~~~~l~~~~~~~~~~~~~~C~~p~~~ 294 (306)
T 2z66_A 249 SLAFLNLTQNDFACTCEHQSFLQWIKDQRQLLVEVERMECATPSDK 294 (306)
T ss_dssp TCCEEECTTCCEECSGGGHHHHHHHHHTGGGBSCGGGCBEEESGGG
T ss_pred cCCEEEccCCCeecccChHHHHHHHHhhhhhhccccccccCCchhh
Confidence 999999999999865431 11223334444555666666666543
No 55
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.95 E-value=1.4e-26 Score=248.03 Aligned_cols=251 Identities=24% Similarity=0.224 Sum_probs=199.0
Q ss_pred CCCEEEccCcccCccCcccccCCCCCCeEECcCCcCcccCcccccCCCCCCEEEccCCcCcCcCCcccCCCCCCCEEEcc
Q 005038 269 NLQFLALSNNNLQGHLFSRNFNLTNLQWLQLEGNRFVGEIPQSLSKCSSLEGLYLNNNSLLGKIPRWLGNLTRLQYIIMP 348 (717)
Q Consensus 269 ~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~l~ 348 (717)
....++.++..++. +|..+. +++++|+|++|.+.+..+..|..+++|++|++++|.+.+..+..|.++++|+.|+++
T Consensus 55 ~~~~v~c~~~~l~~-iP~~~~--~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~ 131 (452)
T 3zyi_A 55 QFSKVVCTRRGLSE-VPQGIP--SNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELF 131 (452)
T ss_dssp SSCEEECCSSCCSS-CCSCCC--TTCSEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECC
T ss_pred CCcEEEECCCCcCc-cCCCCC--CCccEEECcCCcCceECHHHcCCCCCCCEEECCCCccCCcChhhccCcccCCEEECC
Confidence 35677777777764 444443 678889999888888778888888889999999888887777888888889999999
Q ss_pred CCcccCCcccccCCCCCCCEEEccCCcCcccCCCccccccccEEeccCcccccccCccccCCCCcCCEEeCCCC-cCCcc
Q 005038 349 NNHLEGPIPVEFCQLDSLQILDISDNNISGSLPSCFHPLSIKQVHLSKNMLHGQLKRGTFFNCSSLVTLDLSYN-RLNGS 427 (717)
Q Consensus 349 ~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~L~~n-~~~~~ 427 (717)
+|.+++..+..|..+++|++|++++|++.. ++...|..+++|++|++++| .+...
T Consensus 132 ~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~------------------------~~~~~~~~l~~L~~L~l~~~~~l~~i 187 (452)
T 3zyi_A 132 DNWLTVIPSGAFEYLSKLRELWLRNNPIES------------------------IPSYAFNRVPSLMRLDLGELKKLEYI 187 (452)
T ss_dssp SSCCSBCCTTTSSSCTTCCEEECCSCCCCE------------------------ECTTTTTTCTTCCEEECCCCTTCCEE
T ss_pred CCcCCccChhhhcccCCCCEEECCCCCcce------------------------eCHhHHhcCCcccEEeCCCCCCcccc
Confidence 888887777778888888888888887752 23334777888889998884 45544
Q ss_pred cchhhhCCCCCcEEEcCCCccccccchhccCCCCCCEEEccCCcCccCCCcccccccccccccCCCCCCcchhhhhhccc
Q 005038 428 IPDWVDGLSQLSHLILGHNNLEGEVSVQLCELNQLQLLDLSNNNLHGPIPPCFDNTTLHESYSNSSSPDEQFEIFFSIEG 507 (717)
Q Consensus 428 ~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 507 (717)
.+..|.++++|++|++++|++++. + .+..+++|+.|++++|.+++..|..|..+.
T Consensus 188 ~~~~~~~l~~L~~L~L~~n~l~~~-~-~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~----------------------- 242 (452)
T 3zyi_A 188 SEGAFEGLFNLKYLNLGMCNIKDM-P-NLTPLVGLEELEMSGNHFPEIRPGSFHGLS----------------------- 242 (452)
T ss_dssp CTTTTTTCTTCCEEECTTSCCSSC-C-CCTTCTTCCEEECTTSCCSEECGGGGTTCT-----------------------
T ss_pred ChhhccCCCCCCEEECCCCccccc-c-cccccccccEEECcCCcCcccCcccccCcc-----------------------
Confidence 455688888899999998888854 3 477888889999999888877776665543
Q ss_pred ccccccccccceEEEeeccceeeeccccccccceeeCCCCccCCCCcccccCCccCCeEeCCCcccCCCCCcCCCCCCCC
Q 005038 508 HQGFLEKQNHEIFEFTTKNIAYIYQGKVLSLLSGLDLSCNKLIGHIPPQIGNLTRIQTLNLSHNNLTGSIPSTFSNLKHV 587 (717)
Q Consensus 508 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L 587 (717)
+|+.|++++|++.+..+..|.++++|++|+|++|++++..+..|..+++|
T Consensus 243 ------------------------------~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L 292 (452)
T 3zyi_A 243 ------------------------------SLKKLWVMNSQVSLIERNAFDGLASLVELNLAHNNLSSLPHDLFTPLRYL 292 (452)
T ss_dssp ------------------------------TCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTSSTTCTTC
T ss_pred ------------------------------CCCEEEeCCCcCceECHHHhcCCCCCCEEECCCCcCCccChHHhccccCC
Confidence 78888999988888888888888889999999998887777788888889
Q ss_pred CEEECCCCcCCccC
Q 005038 588 ESLDLSNNKLNGKI 601 (717)
Q Consensus 588 ~~L~L~~N~i~~~~ 601 (717)
++|+|++|++.+..
T Consensus 293 ~~L~L~~Np~~CdC 306 (452)
T 3zyi_A 293 VELHLHHNPWNCDC 306 (452)
T ss_dssp CEEECCSSCEECST
T ss_pred CEEEccCCCcCCCC
Confidence 99999998887543
No 56
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.95 E-value=1.7e-26 Score=246.44 Aligned_cols=248 Identities=27% Similarity=0.246 Sum_probs=166.3
Q ss_pred CCEEEccCcccCccCcccccCCCCCCeEECcCCcCcccCcccccCCCCCCEEEccCCcCcCcCCcccCCCCCCCEEEccC
Q 005038 270 LQFLALSNNNLQGHLFSRNFNLTNLQWLQLEGNRFVGEIPQSLSKCSSLEGLYLNNNSLLGKIPRWLGNLTRLQYIIMPN 349 (717)
Q Consensus 270 L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~l~~ 349 (717)
.+.++.++..++. +|..+. ++++.|+|++|++....+..|..+++|++|++++|.+.+..+..|..+++|+.|++++
T Consensus 45 ~~~v~c~~~~l~~-iP~~~~--~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~ 121 (440)
T 3zyj_A 45 FSKVICVRKNLRE-VPDGIS--TNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFD 121 (440)
T ss_dssp SCEEECCSCCCSS-CCSCCC--TTCSEEECCSCCCCEECTTTTSSCSSCCEEECCSSCCCEECGGGGTTCSSCCEEECCS
T ss_pred CCEEEeCCCCcCc-CCCCCC--CCCcEEEccCCcCCeeCHHHhhCCCCCCEEECCCCcCCccChhhccCCccCCEEECCC
Confidence 4566666666653 444433 5677777777777766666777777777777777777666666677777777777777
Q ss_pred CcccCCcccccCCCCCCCEEEccCCcCcccCCCccccccccEEeccCcccccccCccccCCCCcCCEEeCCCC-cCCccc
Q 005038 350 NHLEGPIPVEFCQLDSLQILDISDNNISGSLPSCFHPLSIKQVHLSKNMLHGQLKRGTFFNCSSLVTLDLSYN-RLNGSI 428 (717)
Q Consensus 350 n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~L~~n-~~~~~~ 428 (717)
|.+++..+..|..+++|++|++++|.+.. ++...|..+++|++|++++| .+....
T Consensus 122 n~l~~~~~~~~~~l~~L~~L~L~~N~i~~------------------------~~~~~~~~l~~L~~L~l~~~~~l~~i~ 177 (440)
T 3zyj_A 122 NRLTTIPNGAFVYLSKLKELWLRNNPIES------------------------IPSYAFNRIPSLRRLDLGELKRLSYIS 177 (440)
T ss_dssp SCCSSCCTTTSCSCSSCCEEECCSCCCCE------------------------ECTTTTTTCTTCCEEECCCCTTCCEEC
T ss_pred CcCCeeCHhHhhccccCceeeCCCCcccc------------------------cCHHHhhhCcccCEeCCCCCCCcceeC
Confidence 77776666667777777777777776652 22233666677777777764 344334
Q ss_pred chhhhCCCCCcEEEcCCCccccccchhccCCCCCCEEEccCCcCccCCCcccccccccccccCCCCCCcchhhhhhcccc
Q 005038 429 PDWVDGLSQLSHLILGHNNLEGEVSVQLCELNQLQLLDLSNNNLHGPIPPCFDNTTLHESYSNSSSPDEQFEIFFSIEGH 508 (717)
Q Consensus 429 ~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 508 (717)
+..|.++++|++|++++|+++.. | .+..+++|+.|++++|++++..|..|..+.
T Consensus 178 ~~~~~~l~~L~~L~L~~n~l~~~-~-~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~------------------------ 231 (440)
T 3zyj_A 178 EGAFEGLSNLRYLNLAMCNLREI-P-NLTPLIKLDELDLSGNHLSAIRPGSFQGLM------------------------ 231 (440)
T ss_dssp TTTTTTCSSCCEEECTTSCCSSC-C-CCTTCSSCCEEECTTSCCCEECTTTTTTCT------------------------
T ss_pred cchhhcccccCeecCCCCcCccc-c-ccCCCcccCEEECCCCccCccChhhhccCc------------------------
Confidence 44667777777777777777633 2 366677777777777777766665554433
Q ss_pred cccccccccceEEEeeccceeeeccccccccceeeCCCCccCCCCcccccCCccCCeEeCCCcccCCCCCcCCCCCCCCC
Q 005038 509 QGFLEKQNHEIFEFTTKNIAYIYQGKVLSLLSGLDLSCNKLIGHIPPQIGNLTRIQTLNLSHNNLTGSIPSTFSNLKHVE 588 (717)
Q Consensus 509 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~ 588 (717)
+|+.|+|++|++++..+..|.++++|++|+|++|++++..+..|..+++|+
T Consensus 232 -----------------------------~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~ 282 (440)
T 3zyj_A 232 -----------------------------HLQKLWMIQSQIQVIERNAFDNLQSLVEINLAHNNLTLLPHDLFTPLHHLE 282 (440)
T ss_dssp -----------------------------TCCEEECTTCCCCEECTTSSTTCTTCCEEECTTSCCCCCCTTTTSSCTTCC
T ss_pred -----------------------------cCCEEECCCCceeEEChhhhcCCCCCCEEECCCCCCCccChhHhccccCCC
Confidence 677777777777766666777777777777777777766666677777777
Q ss_pred EEECCCCcCCc
Q 005038 589 SLDLSNNKLNG 599 (717)
Q Consensus 589 ~L~L~~N~i~~ 599 (717)
.|+|++|++.+
T Consensus 283 ~L~L~~Np~~C 293 (440)
T 3zyj_A 283 RIHLHHNPWNC 293 (440)
T ss_dssp EEECCSSCEEC
T ss_pred EEEcCCCCccC
Confidence 77777777654
No 57
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.95 E-value=6.5e-27 Score=234.52 Aligned_cols=89 Identities=21% Similarity=0.244 Sum_probs=65.1
Q ss_pred ccceeeCCCCccCCCCcccccCCccCCeEeCCCcccCCCCCcCCCCCCCCCEEECCCCcCCccCchhhcCCCCCCEEecc
Q 005038 538 LLSGLDLSCNKLIGHIPPQIGNLTRIQTLNLSHNNLTGSIPSTFSNLKHVESLDLSNNKLNGKIPHQLVELKTLEVFSVA 617 (717)
Q Consensus 538 ~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~N~i~~~~p~~~~~l~~L~~L~l~ 617 (717)
+|+.|++++|++++..+..+..+++|++|++++|.+++..|..|..+++|++|++++|++++..++.+..+++|+.|+++
T Consensus 154 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~ 233 (285)
T 1ozn_A 154 NLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLN 233 (285)
T ss_dssp TCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCHHHHTTCTTCCEEECC
T ss_pred CccEEECCCCcccccCHHHhcCccccCEEECCCCcccccCHhHccCcccccEeeCCCCcCCcCCHHHcccCcccCEEecc
Confidence 45556666666554445557777778888888888877777777788888888888888876666677778888888888
Q ss_pred CCcCeecCC
Q 005038 618 YNNLSGEIP 626 (717)
Q Consensus 618 ~N~l~~~~p 626 (717)
+|++.+..+
T Consensus 234 ~N~~~c~~~ 242 (285)
T 1ozn_A 234 DNPWVCDCR 242 (285)
T ss_dssp SSCEECSGG
T ss_pred CCCccCCCC
Confidence 888876554
No 58
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.95 E-value=1.6e-29 Score=281.94 Aligned_cols=332 Identities=11% Similarity=0.046 Sum_probs=176.6
Q ss_pred CCCCCCEEEccCCccccccc---hhhhhCCCCCCEEEccCcccCc----cCcccccCCCCCCeEECcCCcCcccCccccc
Q 005038 241 NMKFLQILDLSNNHLTGEIP---EHLAVGCVNLQFLALSNNNLQG----HLFSRNFNLTNLQWLQLEGNRFVGEIPQSLS 313 (717)
Q Consensus 241 ~l~~L~~L~Ls~n~l~~~~~---~~~~~~~~~L~~L~L~~n~i~~----~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~ 313 (717)
.+++|++|++++|.+++... ..+...+++|++|++++|.+++ ..+..+..+++|++|++++|.+.+ .+..+.
T Consensus 162 ~~~~L~~L~L~~~~~~~~~~~~l~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~-l~~~~~ 240 (592)
T 3ogk_B 162 HCRKIKTLLMEESSFSEKDGKWLHELAQHNTSLEVLNFYMTEFAKISPKDLETIARNCRSLVSVKVGDFEILE-LVGFFK 240 (592)
T ss_dssp HCTTCSEEECTTCEEECCCSHHHHHHHHHCCCCCEEECTTCCCSSCCHHHHHHHHHHCTTCCEEECSSCBGGG-GHHHHH
T ss_pred hCCCCCEEECccccccCcchhHHHHHHhcCCCccEEEeeccCCCccCHHHHHHHHhhCCCCcEEeccCccHHH-HHHHHh
Confidence 44555555555554442211 1122234555555555555441 112222344555555555555443 334455
Q ss_pred CCCCCCEEEccCCcCc---CcCCcccCCCCCCCEEEccCCcccCCcccccCCCCCCCEEEccCCcCcccCCC--cccccc
Q 005038 314 KCSSLEGLYLNNNSLL---GKIPRWLGNLTRLQYIIMPNNHLEGPIPVEFCQLDSLQILDISDNNISGSLPS--CFHPLS 388 (717)
Q Consensus 314 ~l~~L~~L~L~~n~~~---~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~--~~~~~~ 388 (717)
.+++|++|+++..... ...+..+..+++|+.++++++... .++..+..+++|++|++++|.+.+.... ...+++
T Consensus 241 ~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~-~l~~~~~~~~~L~~L~Ls~~~l~~~~~~~~~~~~~~ 319 (592)
T 3ogk_B 241 AAANLEEFCGGSLNEDIGMPEKYMNLVFPRKLCRLGLSYMGPN-EMPILFPFAAQIRKLDLLYALLETEDHCTLIQKCPN 319 (592)
T ss_dssp HCTTCCEEEECBCCCCTTCTTSSSCCCCCTTCCEEEETTCCTT-TGGGGGGGGGGCCEEEETTCCCCHHHHHHHHTTCTT
T ss_pred hhhHHHhhcccccccccchHHHHHHhhccccccccCccccchh-HHHHHHhhcCCCcEEecCCCcCCHHHHHHHHHhCcC
Confidence 5555555555432211 122233444555555555543222 3444444555555555555554322111 112445
Q ss_pred ccEEeccCcccccccCccccCCCCcCCEEeCCC-----------CcCCcc-cchhhhCCCCCcEEEcCCCccccccchhc
Q 005038 389 IKQVHLSKNMLHGQLKRGTFFNCSSLVTLDLSY-----------NRLNGS-IPDWVDGLSQLSHLILGHNNLEGEVSVQL 456 (717)
Q Consensus 389 L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~L~~-----------n~~~~~-~~~~~~~l~~L~~L~L~~n~l~~~~~~~l 456 (717)
|+.|+++ +.+........+..+++|++|++++ +.+++. .+.....+++|++|+++.|++++..+..+
T Consensus 320 L~~L~L~-~~~~~~~l~~~~~~~~~L~~L~L~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~l~~~~~~~l 398 (592)
T 3ogk_B 320 LEVLETR-NVIGDRGLEVLAQYCKQLKRLRIERGADEQGMEDEEGLVSQRGLIALAQGCQELEYMAVYVSDITNESLESI 398 (592)
T ss_dssp CCEEEEE-GGGHHHHHHHHHHHCTTCCEEEEECCCCSSTTSSTTCCCCHHHHHHHHHHCTTCSEEEEEESCCCHHHHHHH
T ss_pred CCEEecc-CccCHHHHHHHHHhCCCCCEEEeecCccccccccccCccCHHHHHHHHhhCccCeEEEeecCCccHHHHHHH
Confidence 5555555 2222222222245567788888883 445432 22224457888888887788876666666
Q ss_pred cC-CCCCCEEEcc----CCcCccCCCc-ccccccccccccCCCCCCcchhhhhhcccccccccccccceEEEeeccceee
Q 005038 457 CE-LNQLQLLDLS----NNNLHGPIPP-CFDNTTLHESYSNSSSPDEQFEIFFSIEGHQGFLEKQNHEIFEFTTKNIAYI 530 (717)
Q Consensus 457 ~~-l~~L~~L~L~----~n~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 530 (717)
.. +++|+.|+++ .|.+++...+ .+..
T Consensus 399 ~~~~~~L~~L~l~~~~~~n~l~~~p~~~~~~~------------------------------------------------ 430 (592)
T 3ogk_B 399 GTYLKNLCDFRLVLLDREERITDLPLDNGVRS------------------------------------------------ 430 (592)
T ss_dssp HHHCCSCCEEEEEECSCCSCCSSCCCHHHHHH------------------------------------------------
T ss_pred HhhCCCCcEEEEeecCCCccccCchHHHHHHH------------------------------------------------
Confidence 54 7788888886 4444422110 0000
Q ss_pred eccccccccceeeCCCCc--cCCCCccccc-CCccCCeEeCCCcccCC-CCCcCCCCCCCCCEEECCCCcCCcc-Cchhh
Q 005038 531 YQGKVLSLLSGLDLSCNK--LIGHIPPQIG-NLTRIQTLNLSHNNLTG-SIPSTFSNLKHVESLDLSNNKLNGK-IPHQL 605 (717)
Q Consensus 531 ~~~~~l~~L~~L~L~~n~--l~~~~~~~l~-~l~~L~~L~Ls~n~l~~-~~p~~~~~l~~L~~L~L~~N~i~~~-~p~~~ 605 (717)
....+++|+.|++++|. +++..+..+. .+++|++|+|++|++++ .++..+.++++|++|++++|++++. ++...
T Consensus 431 -~~~~~~~L~~L~L~~~~~~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~ 509 (592)
T 3ogk_B 431 -LLIGCKKLRRFAFYLRQGGLTDLGLSYIGQYSPNVRWMLLGYVGESDEGLMEFSRGCPNLQKLEMRGCCFSERAIAAAV 509 (592)
T ss_dssp -HHHHCTTCCEEEEECCGGGCCHHHHHHHHHSCTTCCEEEECSCCSSHHHHHHHHTCCTTCCEEEEESCCCBHHHHHHHH
T ss_pred -HHHhCCCCCEEEEecCCCCccHHHHHHHHHhCccceEeeccCCCCCHHHHHHHHhcCcccCeeeccCCCCcHHHHHHHH
Confidence 00124468888886543 4444333433 37788888888888875 2344456788888888888887643 34445
Q ss_pred cCCCCCCEEeccCCcCeec
Q 005038 606 VELKTLEVFSVAYNNLSGE 624 (717)
Q Consensus 606 ~~l~~L~~L~l~~N~l~~~ 624 (717)
..+++|++|++++|+++..
T Consensus 510 ~~l~~L~~L~ls~n~it~~ 528 (592)
T 3ogk_B 510 TKLPSLRYLWVQGYRASMT 528 (592)
T ss_dssp HHCSSCCEEEEESCBCCTT
T ss_pred HhcCccCeeECcCCcCCHH
Confidence 6788888888888887743
No 59
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.94 E-value=1.2e-29 Score=282.98 Aligned_cols=407 Identities=13% Similarity=0.054 Sum_probs=221.5
Q ss_pred CCCCCCEEEccCCCCcccCChhhhhCCCC-CCEEEccCCcC-cc-cCccCcCCCCCcCEEEccCCcCCccCCcc---ccc
Q 005038 143 HQHDLEYVDLSHIKMNGEFPNWLLENNTK-LETLFLVNDSL-AG-PFRLPIHSHKRLRQLDVSNNNIRGHIPVK---IGD 216 (717)
Q Consensus 143 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~~-L~~L~l~~n~~-~~-~~~~~~~~~~~L~~L~ls~n~i~~~~~~~---~~~ 216 (717)
.+++|++|+++++.+++..+.++...++. |++|++++|.. .. ..+.....+++|++|++++|.+++....+ +..
T Consensus 110 ~~~~L~~L~L~~~~i~~~~~~~l~~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~ 189 (592)
T 3ogk_B 110 NLRQLKSVHFRRMIVSDLDLDRLAKARADDLETLKLDKCSGFTTDGLLSIVTHCRKIKTLLMEESSFSEKDGKWLHELAQ 189 (592)
T ss_dssp HCTTCCEEEEESCBCCHHHHHHHHHHHGGGCCEEEEESCEEEEHHHHHHHHHHCTTCSEEECTTCEEECCCSHHHHHHHH
T ss_pred hCCCCCeEEeeccEecHHHHHHHHHhccccCcEEECcCCCCcCHHHHHHHHhhCCCCCEEECccccccCcchhHHHHHHh
Confidence 56666777776666655444444222333 66666666641 11 01111234566666666666654332211 223
Q ss_pred cCCCCcEEECCCCCCC----ccCCccccCCCCCCEEEccCCccccccchhhhhCCCCCCEEEccCcccC---ccCccccc
Q 005038 217 VLPSLYVFNNSMNALD----GSIPSSFGNMKFLQILDLSNNHLTGEIPEHLAVGCVNLQFLALSNNNLQ---GHLFSRNF 289 (717)
Q Consensus 217 ~l~~L~~L~l~~n~~~----~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~L~~L~L~~n~i~---~~~~~~~~ 289 (717)
.+++|++|++++|.+. +.++..+..+++|++|++++|.+. .++..+ ..+++|++|+++..... ......+.
T Consensus 190 ~~~~L~~L~L~~n~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~-~l~~~~-~~~~~L~~L~l~~~~~~~~~~~~~~~l~ 267 (592)
T 3ogk_B 190 HNTSLEVLNFYMTEFAKISPKDLETIARNCRSLVSVKVGDFEIL-ELVGFF-KAAANLEEFCGGSLNEDIGMPEKYMNLV 267 (592)
T ss_dssp HCCCCCEEECTTCCCSSCCHHHHHHHHHHCTTCCEEECSSCBGG-GGHHHH-HHCTTCCEEEECBCCCCTTCTTSSSCCC
T ss_pred cCCCccEEEeeccCCCccCHHHHHHHHhhCCCCcEEeccCccHH-HHHHHH-hhhhHHHhhcccccccccchHHHHHHhh
Confidence 3556666666666554 223333445566666666666555 344333 23566666666542211 12223344
Q ss_pred CCCCCCeEECcCCcCcccCcccccCCCCCCEEEccCCcCcCcCC-cccCCCCCCCEEEccCCcccCCcccccCCCCCCCE
Q 005038 290 NLTNLQWLQLEGNRFVGEIPQSLSKCSSLEGLYLNNNSLLGKIP-RWLGNLTRLQYIIMPNNHLEGPIPVEFCQLDSLQI 368 (717)
Q Consensus 290 ~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~-~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~ 368 (717)
.+++|+.|+++++... ..|..+..+++|++|++++|.+.+... ..+..+++|+.|+++++...+..+.....+++|++
T Consensus 268 ~~~~L~~L~l~~~~~~-~l~~~~~~~~~L~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~~~~~~~~l~~~~~~~~~L~~ 346 (592)
T 3ogk_B 268 FPRKLCRLGLSYMGPN-EMPILFPFAAQIRKLDLLYALLETEDHCTLIQKCPNLEVLETRNVIGDRGLEVLAQYCKQLKR 346 (592)
T ss_dssp CCTTCCEEEETTCCTT-TGGGGGGGGGGCCEEEETTCCCCHHHHHHHHTTCTTCCEEEEEGGGHHHHHHHHHHHCTTCCE
T ss_pred ccccccccCccccchh-HHHHHHhhcCCCcEEecCCCcCCHHHHHHHHHhCcCCCEEeccCccCHHHHHHHHHhCCCCCE
Confidence 4555555555553222 334444555555555555555432222 22344555555555522211112222234455555
Q ss_pred EEccC---CcCcccCCCccccccccEEeccCcccccccCccccCCCCcCCEEeCCCCcCCcccchhhhC-CCCCcEEEcC
Q 005038 369 LDISD---NNISGSLPSCFHPLSIKQVHLSKNMLHGQLKRGTFFNCSSLVTLDLSYNRLNGSIPDWVDG-LSQLSHLILG 444 (717)
Q Consensus 369 L~l~~---n~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~~~~-l~~L~~L~L~ 444 (717)
|++++ +...... .+.+.+......+..+++|++|+++.+.+++..+..+.. +++|+.|+++
T Consensus 347 L~L~~g~~~~~~~~~---------------~~~~~~~~~~~l~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~~L~~L~l~ 411 (592)
T 3ogk_B 347 LRIERGADEQGMEDE---------------EGLVSQRGLIALAQGCQELEYMAVYVSDITNESLESIGTYLKNLCDFRLV 411 (592)
T ss_dssp EEEECCCCSSTTSST---------------TCCCCHHHHHHHHHHCTTCSEEEEEESCCCHHHHHHHHHHCCSCCEEEEE
T ss_pred EEeecCccccccccc---------------cCccCHHHHHHHHhhCccCeEEEeecCCccHHHHHHHHhhCCCCcEEEEe
Confidence 55552 0000000 122221111122345788999999888888766666655 8899999996
Q ss_pred ----CCccccc-----cchhccCCCCCCEEEccCCc--CccCCCcccccccccccccCCCCCCcchhhhhhccccccccc
Q 005038 445 ----HNNLEGE-----VSVQLCELNQLQLLDLSNNN--LHGPIPPCFDNTTLHESYSNSSSPDEQFEIFFSIEGHQGFLE 513 (717)
Q Consensus 445 ----~n~l~~~-----~~~~l~~l~~L~~L~L~~n~--l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 513 (717)
.|.+++. .+..+..+++|+.|++++|. +++..+..+
T Consensus 412 ~~~~~n~l~~~p~~~~~~~~~~~~~~L~~L~L~~~~~~l~~~~~~~~--------------------------------- 458 (592)
T 3ogk_B 412 LLDREERITDLPLDNGVRSLLIGCKKLRRFAFYLRQGGLTDLGLSYI--------------------------------- 458 (592)
T ss_dssp ECSCCSCCSSCCCHHHHHHHHHHCTTCCEEEEECCGGGCCHHHHHHH---------------------------------
T ss_pred ecCCCccccCchHHHHHHHHHHhCCCCCEEEEecCCCCccHHHHHHH---------------------------------
Confidence 5677753 33346678999999997654 332111111
Q ss_pred ccccceEEEeeccceeeeccccccccceeeCCCCccCCC-CcccccCCccCCeEeCCCcccCCC-CCcCCCCCCCCCEEE
Q 005038 514 KQNHEIFEFTTKNIAYIYQGKVLSLLSGLDLSCNKLIGH-IPPQIGNLTRIQTLNLSHNNLTGS-IPSTFSNLKHVESLD 591 (717)
Q Consensus 514 ~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~-~~~~l~~l~~L~~L~Ls~n~l~~~-~p~~~~~l~~L~~L~ 591 (717)
...+++|+.|++++|++++. .+..+.++++|++|+|++|.+++. ++..+..+++|++|+
T Consensus 459 -------------------~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~ 519 (592)
T 3ogk_B 459 -------------------GQYSPNVRWMLLGYVGESDEGLMEFSRGCPNLQKLEMRGCCFSERAIAAAVTKLPSLRYLW 519 (592)
T ss_dssp -------------------HHSCTTCCEEEECSCCSSHHHHHHHHTCCTTCCEEEEESCCCBHHHHHHHHHHCSSCCEEE
T ss_pred -------------------HHhCccceEeeccCCCCCHHHHHHHHhcCcccCeeeccCCCCcHHHHHHHHHhcCccCeeE
Confidence 01245799999999988753 344567889999999999998744 333445689999999
Q ss_pred CCCCcCCccCchhh-cCCCCCCEEeccCC
Q 005038 592 LSNNKLNGKIPHQL-VELKTLEVFSVAYN 619 (717)
Q Consensus 592 L~~N~i~~~~p~~~-~~l~~L~~L~l~~N 619 (717)
+++|+++......+ ..++.+....+..+
T Consensus 520 ls~n~it~~~~~~l~~~~p~l~~~~~~~~ 548 (592)
T 3ogk_B 520 VQGYRASMTGQDLMQMARPYWNIELIPSR 548 (592)
T ss_dssp EESCBCCTTCTTGGGGCCTTEEEEEECCC
T ss_pred CcCCcCCHHHHHHHHHhCCCcEEEEecCc
Confidence 99999886543333 35677766666554
No 60
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.94 E-value=3.5e-26 Score=229.13 Aligned_cols=225 Identities=26% Similarity=0.268 Sum_probs=153.6
Q ss_pred cEEECCCCCCCccCCccccCCCCCCEEEccCCccccccchhhhhCCCCCCEEEccCcccCccCcccccCCCCCCeEECcC
Q 005038 222 YVFNNSMNALDGSIPSSFGNMKFLQILDLSNNHLTGEIPEHLAVGCVNLQFLALSNNNLQGHLFSRNFNLTNLQWLQLEG 301 (717)
Q Consensus 222 ~~L~l~~n~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~ 301 (717)
++++.+++.++ .+|..+ .++|++|++++|.++ .++...+..+++|++|++++|.+++..+..+..+++|++|++++
T Consensus 14 ~~~~c~~~~l~-~ip~~~--~~~l~~L~l~~n~i~-~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~ 89 (285)
T 1ozn_A 14 VTTSCPQQGLQ-AVPVGI--PAASQRIFLHGNRIS-HVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSD 89 (285)
T ss_dssp CEEECCSSCCS-SCCTTC--CTTCSEEECTTSCCC-EECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCS
T ss_pred eEEEcCcCCcc-cCCcCC--CCCceEEEeeCCcCC-ccCHHHcccCCCCCEEECCCCccceeCHhhcCCccCCCEEeCCC
Confidence 45566666555 334322 356666777666666 44444444566666666666666665566666666666666666
Q ss_pred Cc-CcccCcccccCCCCCCEEEccCCcCcCcCCcccCCCCCCCEEEccCCcccCCcccccCCCCCCCEEEccCCcCcccC
Q 005038 302 NR-FVGEIPQSLSKCSSLEGLYLNNNSLLGKIPRWLGNLTRLQYIIMPNNHLEGPIPVEFCQLDSLQILDISDNNISGSL 380 (717)
Q Consensus 302 n~-l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~ 380 (717)
|. +....+..+..+++|++|++++|.+.+..+..|..+++|+.|++++|.+++..+..+..+++|++|++++|++.
T Consensus 90 n~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~--- 166 (285)
T 1ozn_A 90 NAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRIS--- 166 (285)
T ss_dssp CTTCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC---
T ss_pred CCCccccCHHHhcCCcCCCEEECCCCcCCEECHhHhhCCcCCCEEECCCCcccccCHhHhccCCCccEEECCCCccc---
Confidence 65 55444556666666666666666666555556666666666666666666555555666666666666666554
Q ss_pred CCccccccccEEeccCcccccccCccccCCCCcCCEEeCCCCcCCcccchhhhCCCCCcEEEcCCCccccccchhccCCC
Q 005038 381 PSCFHPLSIKQVHLSKNMLHGQLKRGTFFNCSSLVTLDLSYNRLNGSIPDWVDGLSQLSHLILGHNNLEGEVSVQLCELN 460 (717)
Q Consensus 381 ~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~ 460 (717)
.++...|..+++|++|++++|.+.+..|.++..+++|+.|++++|++++..+..+..++
T Consensus 167 ---------------------~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~ 225 (285)
T 1ozn_A 167 ---------------------SVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLR 225 (285)
T ss_dssp ---------------------EECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCHHHHTTCT
T ss_pred ---------------------ccCHHHhcCccccCEEECCCCcccccCHhHccCcccccEeeCCCCcCCcCCHHHcccCc
Confidence 23333477788899999999999888788888899999999999999887777788899
Q ss_pred CCCEEEccCCcCcc
Q 005038 461 QLQLLDLSNNNLHG 474 (717)
Q Consensus 461 ~L~~L~L~~n~l~~ 474 (717)
+|+.|++++|++..
T Consensus 226 ~L~~L~l~~N~~~c 239 (285)
T 1ozn_A 226 ALQYLRLNDNPWVC 239 (285)
T ss_dssp TCCEEECCSSCEEC
T ss_pred ccCEEeccCCCccC
Confidence 99999999998764
No 61
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.94 E-value=4.2e-26 Score=232.58 Aligned_cols=234 Identities=20% Similarity=0.315 Sum_probs=127.3
Q ss_pred CCCCeEECcCCcCcccCcccccCCCCCCEEEccCCcCcCcCCcccCCCCCCCEEEccCCcccCCcccccCCCCCCCEEEc
Q 005038 292 TNLQWLQLEGNRFVGEIPQSLSKCSSLEGLYLNNNSLLGKIPRWLGNLTRLQYIIMPNNHLEGPIPVEFCQLDSLQILDI 371 (717)
Q Consensus 292 ~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l 371 (717)
+++++|++++|.+. .+|..+..+++|++|++++|.+. .+|..+..+++|++|++++|.++ .+|..+..+++|++|++
T Consensus 81 ~~l~~L~L~~n~l~-~lp~~l~~l~~L~~L~L~~n~l~-~lp~~~~~l~~L~~L~Ls~n~l~-~lp~~l~~l~~L~~L~L 157 (328)
T 4fcg_A 81 PGRVALELRSVPLP-QFPDQAFRLSHLQHMTIDAAGLM-ELPDTMQQFAGLETLTLARNPLR-ALPASIASLNRLRELSI 157 (328)
T ss_dssp TTCCEEEEESSCCS-SCCSCGGGGTTCSEEEEESSCCC-CCCSCGGGGTTCSEEEEESCCCC-CCCGGGGGCTTCCEEEE
T ss_pred cceeEEEccCCCch-hcChhhhhCCCCCEEECCCCCcc-chhHHHhccCCCCEEECCCCccc-cCcHHHhcCcCCCEEEC
Confidence 34444555554444 33444444555555555555554 44545555555555555555555 34555555555666666
Q ss_pred cCCcCcccCCCccccccccEEeccCcccccccCccccCCCCcCCEEeCCCCcCCcccchhhhCCCCCcEEEcCCCccccc
Q 005038 372 SDNNISGSLPSCFHPLSIKQVHLSKNMLHGQLKRGTFFNCSSLVTLDLSYNRLNGSIPDWVDGLSQLSHLILGHNNLEGE 451 (717)
Q Consensus 372 ~~n~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~ 451 (717)
++|.+.+.+|..+.. . .. .+.|..+++|++|++++|.++ .+|..+..+++|++|++++|++++
T Consensus 158 ~~n~~~~~~p~~~~~-----~---------~~-~~~~~~l~~L~~L~L~~n~l~-~lp~~l~~l~~L~~L~L~~N~l~~- 220 (328)
T 4fcg_A 158 RACPELTELPEPLAS-----T---------DA-SGEHQGLVNLQSLRLEWTGIR-SLPASIANLQNLKSLKIRNSPLSA- 220 (328)
T ss_dssp EEETTCCCCCSCSEE-----E---------C--CCCEEESTTCCEEEEEEECCC-CCCGGGGGCTTCCEEEEESSCCCC-
T ss_pred CCCCCccccChhHhh-----c---------cc-hhhhccCCCCCEEECcCCCcC-cchHhhcCCCCCCEEEccCCCCCc-
Confidence 555544443332110 0 00 011445566666666666666 455556666666666666666663
Q ss_pred cchhccCCCCCCEEEccCCcCccCCCcccccccccccccCCCCCCcchhhhhhcccccccccccccceEEEeeccceeee
Q 005038 452 VSVQLCELNQLQLLDLSNNNLHGPIPPCFDNTTLHESYSNSSSPDEQFEIFFSIEGHQGFLEKQNHEIFEFTTKNIAYIY 531 (717)
Q Consensus 452 ~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 531 (717)
.+..+..+++|++|++++|.+
T Consensus 221 l~~~l~~l~~L~~L~Ls~n~~----------------------------------------------------------- 241 (328)
T 4fcg_A 221 LGPAIHHLPKLEELDLRGCTA----------------------------------------------------------- 241 (328)
T ss_dssp CCGGGGGCTTCCEEECTTCTT-----------------------------------------------------------
T ss_pred CchhhccCCCCCEEECcCCcc-----------------------------------------------------------
Confidence 333455555555555555544
Q ss_pred ccccccccceeeCCCCccCCCCcccccCCccCCeEeCCCcccCCCCCcCCCCCCCCCEEECCCCcCCccCchhhcCCCCC
Q 005038 532 QGKVLSLLSGLDLSCNKLIGHIPPQIGNLTRIQTLNLSHNNLTGSIPSTFSNLKHVESLDLSNNKLNGKIPHQLVELKTL 611 (717)
Q Consensus 532 ~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~N~i~~~~p~~~~~l~~L 611 (717)
.+.+|..++.+++|++|+|++|++.+.+|..+.++++|++|+|++|++.+.+|+.+..+++|
T Consensus 242 ------------------~~~~p~~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~iP~~l~~L~~L 303 (328)
T 4fcg_A 242 ------------------LRNYPPIFGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLPSLIAQLPAN 303 (328)
T ss_dssp ------------------CCBCCCCTTCCCCCCEEECTTCTTCCBCCTTGGGCTTCCEEECTTCTTCCCCCGGGGGSCTT
T ss_pred ------------------hhhhHHHhcCCCCCCEEECCCCCchhhcchhhhcCCCCCEEeCCCCCchhhccHHHhhccCc
Confidence 44455555566666666666666666666666666666666666666666666666666666
Q ss_pred CEEeccCCcCe
Q 005038 612 EVFSVAYNNLS 622 (717)
Q Consensus 612 ~~L~l~~N~l~ 622 (717)
+.+++..+.+.
T Consensus 304 ~~l~l~~~~~~ 314 (328)
T 4fcg_A 304 CIILVPPHLQA 314 (328)
T ss_dssp CEEECCGGGSC
T ss_pred eEEeCCHHHHH
Confidence 66666655443
No 62
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.94 E-value=3.6e-28 Score=247.22 Aligned_cols=264 Identities=22% Similarity=0.228 Sum_probs=178.9
Q ss_pred EEEccCcccCccCcccccCCCCCCeEECcCCcCcccCcccccCCCCCCEEEccCCcCcCcCCcccCCCCCCCEEEccCCc
Q 005038 272 FLALSNNNLQGHLFSRNFNLTNLQWLQLEGNRFVGEIPQSLSKCSSLEGLYLNNNSLLGKIPRWLGNLTRLQYIIMPNNH 351 (717)
Q Consensus 272 ~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~l~~n~ 351 (717)
..+++.+.+.......+..+++|++|++++|.+.+..|..+..+++|++|++++|.+.+..+ +..+++|+.|++++|.
T Consensus 14 i~~ls~~~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~--~~~l~~L~~L~Ls~n~ 91 (317)
T 3o53_A 14 IEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDLNNNY 91 (317)
T ss_dssp EESCCTTTHHHHHHHHHTTGGGCSEEECTTSCCCCCCHHHHTTCTTCCEEECTTSCCEEEEE--ETTCTTCCEEECCSSE
T ss_pred EeeccccchhhhHHHHhccCCCCCEEECcCCccCcCCHHHhhCCCcCCEEECCCCcCCcchh--hhhcCCCCEEECcCCc
Confidence 34445555543333444455566666666666666555666666666666666666654332 5566666666666666
Q ss_pred ccCCcccccCCCCCCCEEEccCCcCcccCCCccccccccEEeccCcccccccCccccCCCCcCCEEeCCCCcCCcccchh
Q 005038 352 LEGPIPVEFCQLDSLQILDISDNNISGSLPSCFHPLSIKQVHLSKNMLHGQLKRGTFFNCSSLVTLDLSYNRLNGSIPDW 431 (717)
Q Consensus 352 ~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~ 431 (717)
+++.. ..++|++|++++|.+.+ . + ...+++|++|++++|++++..+..
T Consensus 92 l~~l~-----~~~~L~~L~l~~n~l~~-----------------------~-~---~~~~~~L~~L~l~~N~l~~~~~~~ 139 (317)
T 3o53_A 92 VQELL-----VGPSIETLHAANNNISR-----------------------V-S---CSRGQGKKNIYLANNKITMLRDLD 139 (317)
T ss_dssp EEEEE-----ECTTCCEEECCSSCCSE-----------------------E-E---ECCCSSCEEEECCSSCCCSGGGBC
T ss_pred ccccc-----CCCCcCEEECCCCccCC-----------------------c-C---ccccCCCCEEECCCCCCCCccchh
Confidence 65322 12555666665555542 1 1 123567899999999998777778
Q ss_pred hhCCCCCcEEEcCCCccccccchhc-cCCCCCCEEEccCCcCccCCCcccccccccccccCCCCCCcchhhhhhcccccc
Q 005038 432 VDGLSQLSHLILGHNNLEGEVSVQL-CELNQLQLLDLSNNNLHGPIPPCFDNTTLHESYSNSSSPDEQFEIFFSIEGHQG 510 (717)
Q Consensus 432 ~~~l~~L~~L~L~~n~l~~~~~~~l-~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 510 (717)
+..+++|++|++++|++++..+..+ ..+++|++|++++|.+++..+.
T Consensus 140 ~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~-------------------------------- 187 (317)
T 3o53_A 140 EGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDVKGQ-------------------------------- 187 (317)
T ss_dssp TGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCCEEECC--------------------------------
T ss_pred hhccCCCCEEECCCCCCCcccHHHHhhccCcCCEEECCCCcCcccccc--------------------------------
Confidence 8888999999999999987777666 3688899999999888643211
Q ss_pred cccccccceEEEeeccceeeeccccccccceeeCCCCccCCCCcccccCCccCCeEeCCCcccCCCCCcCCCCCCCCCEE
Q 005038 511 FLEKQNHEIFEFTTKNIAYIYQGKVLSLLSGLDLSCNKLIGHIPPQIGNLTRIQTLNLSHNNLTGSIPSTFSNLKHVESL 590 (717)
Q Consensus 511 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L 590 (717)
..+++|+.|++++|++++. |..+..+++|++|++++|+++ .+|..+..+++|++|
T Consensus 188 -----------------------~~l~~L~~L~Ls~N~l~~l-~~~~~~l~~L~~L~L~~N~l~-~l~~~~~~l~~L~~L 242 (317)
T 3o53_A 188 -----------------------VVFAKLKTLDLSSNKLAFM-GPEFQSAAGVTWISLRNNKLV-LIEKALRFSQNLEHF 242 (317)
T ss_dssp -----------------------CCCTTCCEEECCSSCCCEE-CGGGGGGTTCSEEECTTSCCC-EECTTCCCCTTCCEE
T ss_pred -----------------------cccccCCEEECCCCcCCcc-hhhhcccCcccEEECcCCccc-chhhHhhcCCCCCEE
Confidence 1134688888888888854 445788888888888888888 466778888888888
Q ss_pred ECCCCcCC-ccCchhhcCCCCCCEEeccCC-cCeecCC
Q 005038 591 DLSNNKLN-GKIPHQLVELKTLEVFSVAYN-NLSGEIP 626 (717)
Q Consensus 591 ~L~~N~i~-~~~p~~~~~l~~L~~L~l~~N-~l~~~~p 626 (717)
++++|++. +.+|..+..+++|+.+++++| .+.+..|
T Consensus 243 ~l~~N~~~~~~~~~~~~~~~~L~~l~l~~~~~l~~~~~ 280 (317)
T 3o53_A 243 DLRGNGFHCGTLRDFFSKNQRVQTVAKQTVKKLTGQNE 280 (317)
T ss_dssp ECTTCCCBHHHHHHHHHTCHHHHHHHHHHHHHHHSSSS
T ss_pred EccCCCccCcCHHHHHhccccceEEECCCchhccCCch
Confidence 88888887 566777778888888888744 3444433
No 63
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.94 E-value=1.8e-27 Score=242.06 Aligned_cols=274 Identities=19% Similarity=0.202 Sum_probs=217.7
Q ss_pred CCeEECcCCcCcccCcccccCCCCCCEEEccCCcCcCcCCcccCCCCCCCEEEccCCcccCCcccccCCCCCCCEEEccC
Q 005038 294 LQWLQLEGNRFVGEIPQSLSKCSSLEGLYLNNNSLLGKIPRWLGNLTRLQYIIMPNNHLEGPIPVEFCQLDSLQILDISD 373 (717)
Q Consensus 294 L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~ 373 (717)
++..+++.+.+.......+..+++|++|++++|.+.+..|..|..+++|+.|++++|.+++..+ +..+++|++|++++
T Consensus 12 l~i~~ls~~~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~--~~~l~~L~~L~Ls~ 89 (317)
T 3o53_A 12 YKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDLNN 89 (317)
T ss_dssp EEEESCCTTTHHHHHHHHHTTGGGCSEEECTTSCCCCCCHHHHTTCTTCCEEECTTSCCEEEEE--ETTCTTCCEEECCS
T ss_pred eeEeeccccchhhhHHHHhccCCCCCEEECcCCccCcCCHHHhhCCCcCCEEECCCCcCCcchh--hhhcCCCCEEECcC
Confidence 4556677777765555666777899999999999998777889999999999999999986554 88899999999999
Q ss_pred CcCcccCCCccccccccEEeccCcccccccCccccCCCCcCCEEeCCCCcCCcccchhhhCCCCCcEEEcCCCccccccc
Q 005038 374 NNISGSLPSCFHPLSIKQVHLSKNMLHGQLKRGTFFNCSSLVTLDLSYNRLNGSIPDWVDGLSQLSHLILGHNNLEGEVS 453 (717)
Q Consensus 374 n~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~ 453 (717)
|.+.+ +...++|++|++++|.+++..+. .+++|++|++++|++++..+
T Consensus 90 n~l~~-----------------------------l~~~~~L~~L~l~~n~l~~~~~~---~~~~L~~L~l~~N~l~~~~~ 137 (317)
T 3o53_A 90 NYVQE-----------------------------LLVGPSIETLHAANNNISRVSCS---RGQGKKNIYLANNKITMLRD 137 (317)
T ss_dssp SEEEE-----------------------------EEECTTCCEEECCSSCCSEEEEC---CCSSCEEEECCSSCCCSGGG
T ss_pred Ccccc-----------------------------ccCCCCcCEEECCCCccCCcCcc---ccCCCCEEECCCCCCCCccc
Confidence 98763 11237899999999999876544 36889999999999998888
Q ss_pred hhccCCCCCCEEEccCCcCccCCCcccccccccccccCCCCCCcchhhhhhcccccccccccccceEEEeeccceeeecc
Q 005038 454 VQLCELNQLQLLDLSNNNLHGPIPPCFDNTTLHESYSNSSSPDEQFEIFFSIEGHQGFLEKQNHEIFEFTTKNIAYIYQG 533 (717)
Q Consensus 454 ~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 533 (717)
..+..+++|++|++++|.+++..+..+..
T Consensus 138 ~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~--------------------------------------------------- 166 (317)
T 3o53_A 138 LDEGCRSRVQYLDLKLNEIDTVNFAELAA--------------------------------------------------- 166 (317)
T ss_dssp BCTGGGSSEEEEECTTSCCCEEEGGGGGG---------------------------------------------------
T ss_pred hhhhccCCCCEEECCCCCCCcccHHHHhh---------------------------------------------------
Confidence 88889999999999999998665544321
Q ss_pred ccccccceeeCCCCccCCCCcccccCCccCCeEeCCCcccCCCCCcCCCCCCCCCEEECCCCcCCccCchhhcCCCCCCE
Q 005038 534 KVLSLLSGLDLSCNKLIGHIPPQIGNLTRIQTLNLSHNNLTGSIPSTFSNLKHVESLDLSNNKLNGKIPHQLVELKTLEV 613 (717)
Q Consensus 534 ~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~N~i~~~~p~~~~~l~~L~~ 613 (717)
.++.|++|++++|++++. + ....+++|++|+|++|++++. |..+..+++|++|++++|+++ .+|..+..+++|+.
T Consensus 167 -~l~~L~~L~L~~N~l~~~-~-~~~~l~~L~~L~Ls~N~l~~l-~~~~~~l~~L~~L~L~~N~l~-~l~~~~~~l~~L~~ 241 (317)
T 3o53_A 167 -SSDTLEHLNLQYNFIYDV-K-GQVVFAKLKTLDLSSNKLAFM-GPEFQSAAGVTWISLRNNKLV-LIEKALRFSQNLEH 241 (317)
T ss_dssp -GTTTCCEEECTTSCCCEE-E-CCCCCTTCCEEECCSSCCCEE-CGGGGGGTTCSEEECTTSCCC-EECTTCCCCTTCCE
T ss_pred -ccCcCCEEECCCCcCccc-c-cccccccCCEEECCCCcCCcc-hhhhcccCcccEEECcCCccc-chhhHhhcCCCCCE
Confidence 134799999999999855 3 334589999999999999954 445889999999999999998 56888899999999
Q ss_pred EeccCCcCe-ecCCCCCcccCCCCcccccCCcCCCCCCCCCCCCC
Q 005038 614 FSVAYNNLS-GEIPEWKAQFATFNESSYEGNTFLCGLPLPICRSP 657 (717)
Q Consensus 614 L~l~~N~l~-~~~p~~~~~~~~l~~~~~~~n~~~c~~~l~~C~~~ 657 (717)
|++++|++. +.+|.++..+..++.+.+.+++.+.+.+...|..+
T Consensus 242 L~l~~N~~~~~~~~~~~~~~~~L~~l~l~~~~~l~~~~~~~~~~~ 286 (317)
T 3o53_A 242 FDLRGNGFHCGTLRDFFSKNQRVQTVAKQTVKKLTGQNEEECTVP 286 (317)
T ss_dssp EECTTCCCBHHHHHHHHHTCHHHHHHHHHHHHHHHSSSSCCCSST
T ss_pred EEccCCCccCcCHHHHHhccccceEEECCCchhccCCchhccCCC
Confidence 999999999 67778777777777777775544444333334433
No 64
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.93 E-value=1.2e-24 Score=238.36 Aligned_cols=86 Identities=27% Similarity=0.316 Sum_probs=56.6
Q ss_pred ccceeeCCCCccCCCCcccccCCccCCeEeCCCcccCCCCCcCCCCCCCCCEEECCCCcCCccCchhhcCCCCCCEEecc
Q 005038 538 LLSGLDLSCNKLIGHIPPQIGNLTRIQTLNLSHNNLTGSIPSTFSNLKHVESLDLSNNKLNGKIPHQLVELKTLEVFSVA 617 (717)
Q Consensus 538 ~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~N~i~~~~p~~~~~l~~L~~L~l~ 617 (717)
+|+.|++++|++++ +| ..+++|+.|+|++|+++ .+|. .+++|++|+|++|+++ .+|..+..+++|+.|+++
T Consensus 222 ~L~~L~Ls~N~L~~-lp---~~l~~L~~L~Ls~N~L~-~lp~---~~~~L~~L~Ls~N~L~-~lp~~l~~l~~L~~L~L~ 292 (622)
T 3g06_A 222 GLKELIVSGNRLTS-LP---VLPSELKELMVSGNRLT-SLPM---LPSGLLSLSVYRNQLT-RLPESLIHLSSETTVNLE 292 (622)
T ss_dssp TCCEEECCSSCCSC-CC---CCCTTCCEEECCSSCCS-CCCC---CCTTCCEEECCSSCCC-SCCGGGGGSCTTCEEECC
T ss_pred CCCEEEccCCccCc-CC---CCCCcCcEEECCCCCCC-cCCc---ccccCcEEeCCCCCCC-cCCHHHhhccccCEEEec
Confidence 46667777776664 33 34466777777777777 3443 4567777777777776 556667777777777777
Q ss_pred CCcCeecCCCCCccc
Q 005038 618 YNNLSGEIPEWKAQF 632 (717)
Q Consensus 618 ~N~l~~~~p~~~~~~ 632 (717)
+|++++..|..+..+
T Consensus 293 ~N~l~~~~~~~l~~L 307 (622)
T 3g06_A 293 GNPLSERTLQALREI 307 (622)
T ss_dssp SCCCCHHHHHHHHHH
T ss_pred CCCCCCcCHHHHHhc
Confidence 777776666544433
No 65
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.93 E-value=2.7e-25 Score=226.55 Aligned_cols=226 Identities=19% Similarity=0.207 Sum_probs=160.3
Q ss_pred CCCCcEEECCCCCCCccCCccccCCCCCCEEEccCCccccccchhhhhCCCCCCEEEccCcccCccCcccccCCCCCCeE
Q 005038 218 LPSLYVFNNSMNALDGSIPSSFGNMKFLQILDLSNNHLTGEIPEHLAVGCVNLQFLALSNNNLQGHLFSRNFNLTNLQWL 297 (717)
Q Consensus 218 l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L 297 (717)
.+.++.|++++|.+. .+|..+.++++|++|++++|.++ .+|..+. .+++|++|++++|.++ .+|..+..+++|++|
T Consensus 80 ~~~l~~L~L~~n~l~-~lp~~l~~l~~L~~L~L~~n~l~-~lp~~~~-~l~~L~~L~Ls~n~l~-~lp~~l~~l~~L~~L 155 (328)
T 4fcg_A 80 QPGRVALELRSVPLP-QFPDQAFRLSHLQHMTIDAAGLM-ELPDTMQ-QFAGLETLTLARNPLR-ALPASIASLNRLREL 155 (328)
T ss_dssp STTCCEEEEESSCCS-SCCSCGGGGTTCSEEEEESSCCC-CCCSCGG-GGTTCSEEEEESCCCC-CCCGGGGGCTTCCEE
T ss_pred ccceeEEEccCCCch-hcChhhhhCCCCCEEECCCCCcc-chhHHHh-ccCCCCEEECCCCccc-cCcHHHhcCcCCCEE
Confidence 356777777777776 56666777777777777777777 6666554 4777777777777776 456667777777777
Q ss_pred ECcCCcCcccCcccccC---------CCCCCEEEccCCcCcCcCCcccCCCCCCCEEEccCCcccCCcccccCCCCCCCE
Q 005038 298 QLEGNRFVGEIPQSLSK---------CSSLEGLYLNNNSLLGKIPRWLGNLTRLQYIIMPNNHLEGPIPVEFCQLDSLQI 368 (717)
Q Consensus 298 ~L~~n~l~~~~~~~~~~---------l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~ 368 (717)
++++|.+.+.+|..+.. +++|++|++++|.+. .+|..+..+++|+.|++++|.+.+ +|..+..+++|++
T Consensus 156 ~L~~n~~~~~~p~~~~~~~~~~~~~~l~~L~~L~L~~n~l~-~lp~~l~~l~~L~~L~L~~N~l~~-l~~~l~~l~~L~~ 233 (328)
T 4fcg_A 156 SIRACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTGIR-SLPASIANLQNLKSLKIRNSPLSA-LGPAIHHLPKLEE 233 (328)
T ss_dssp EEEEETTCCCCCSCSEEEC-CCCEEESTTCCEEEEEEECCC-CCCGGGGGCTTCCEEEEESSCCCC-CCGGGGGCTTCCE
T ss_pred ECCCCCCccccChhHhhccchhhhccCCCCCEEECcCCCcC-cchHhhcCCCCCCEEEccCCCCCc-CchhhccCCCCCE
Confidence 77776666666655443 566666666666655 455555566666666666666653 3334555566666
Q ss_pred EEccCCcCcccCCCccccccccEEeccCcccccccCccccCCCCcCCEEeCCCCcCCcccchhhhCCCCCcEEEcCCCcc
Q 005038 369 LDISDNNISGSLPSCFHPLSIKQVHLSKNMLHGQLKRGTFFNCSSLVTLDLSYNRLNGSIPDWVDGLSQLSHLILGHNNL 448 (717)
Q Consensus 369 L~l~~n~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~L~~n~l 448 (717)
|++++|.+. +.++.. +..+++|++|++++|.+.+.+|..+..+++|++|++++|++
T Consensus 234 L~Ls~n~~~-----------------------~~~p~~-~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~~ 289 (328)
T 4fcg_A 234 LDLRGCTAL-----------------------RNYPPI-FGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVN 289 (328)
T ss_dssp EECTTCTTC-----------------------CBCCCC-TTCCCCCCEEECTTCTTCCBCCTTGGGCTTCCEEECTTCTT
T ss_pred EECcCCcch-----------------------hhhHHH-hcCCCCCCEEECCCCCchhhcchhhhcCCCCCEEeCCCCCc
Confidence 666655554 444443 77788999999999888888888888999999999999998
Q ss_pred ccccchhccCCCCCCEEEccCCcCc
Q 005038 449 EGEVSVQLCELNQLQLLDLSNNNLH 473 (717)
Q Consensus 449 ~~~~~~~l~~l~~L~~L~L~~n~l~ 473 (717)
.+.+|..+..+++|+.+++..+.+.
T Consensus 290 ~~~iP~~l~~L~~L~~l~l~~~~~~ 314 (328)
T 4fcg_A 290 LSRLPSLIAQLPANCIILVPPHLQA 314 (328)
T ss_dssp CCCCCGGGGGSCTTCEEECCGGGSC
T ss_pred hhhccHHHhhccCceEEeCCHHHHH
Confidence 8889999999999999998877654
No 66
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.93 E-value=1.3e-26 Score=249.48 Aligned_cols=235 Identities=23% Similarity=0.226 Sum_probs=140.2
Q ss_pred CCCCeEECcCCcCcccCcccccCCCCCCEEEccCCcCcCcCCcccCCCCCCCEEEccCCcccCCcccccCCCCCCCEEEc
Q 005038 292 TNLQWLQLEGNRFVGEIPQSLSKCSSLEGLYLNNNSLLGKIPRWLGNLTRLQYIIMPNNHLEGPIPVEFCQLDSLQILDI 371 (717)
Q Consensus 292 ~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l 371 (717)
++|++|+|++|.+.+..|..|..+++|++|++++|.+.+..| +..+++|+.|++++|.+++..+ .++|++|++
T Consensus 34 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~l~~l~~-----~~~L~~L~L 106 (487)
T 3oja_A 34 WNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDLNNNYVQELLV-----GPSIETLHA 106 (487)
T ss_dssp GGCCEEECCSSCCCCCCGGGGTTCTTCCEEECTTSCCEEEEE--CTTCTTCCEEECCSSEEEEEEE-----CTTCCEEEC
T ss_pred CCccEEEeeCCcCCCCCHHHHhCCCCCCEEEeeCCCCCCCcc--cccCCCCCEEEecCCcCCCCCC-----CCCcCEEEC
Confidence 356666666666665555566666666666666666654333 5555666666666665553221 145555555
Q ss_pred cCCcCcccCCCccccccccEEeccCcccccccCccccCCCCcCCEEeCCCCcCCcccchhhhCCCCCcEEEcCCCccccc
Q 005038 372 SDNNISGSLPSCFHPLSIKQVHLSKNMLHGQLKRGTFFNCSSLVTLDLSYNRLNGSIPDWVDGLSQLSHLILGHNNLEGE 451 (717)
Q Consensus 372 ~~n~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~ 451 (717)
++|.+.+ .. ...+++|++|++++|.+++..|..+..+++|+.|++++|.+++.
T Consensus 107 ~~N~l~~-----------------------~~----~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~ 159 (487)
T 3oja_A 107 ANNNISR-----------------------VS----CSRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTV 159 (487)
T ss_dssp CSSCCCC-----------------------EE----ECCCSSCEEEECCSSCCCSGGGBCGGGGSSEEEEECTTSCCCEE
T ss_pred cCCcCCC-----------------------CC----ccccCCCCEEECCCCCCCCCCchhhcCCCCCCEEECCCCCCCCc
Confidence 5555442 11 12246777888888887777677777777888888888887776
Q ss_pred cchhcc-CCCCCCEEEccCCcCccCCCcccccccccccccCCCCCCcchhhhhhcccccccccccccceEEEeeccceee
Q 005038 452 VSVQLC-ELNQLQLLDLSNNNLHGPIPPCFDNTTLHESYSNSSSPDEQFEIFFSIEGHQGFLEKQNHEIFEFTTKNIAYI 530 (717)
Q Consensus 452 ~~~~l~-~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 530 (717)
.|..+. .+++|+.|++++|.+++..+..
T Consensus 160 ~~~~l~~~l~~L~~L~Ls~N~l~~~~~~~--------------------------------------------------- 188 (487)
T 3oja_A 160 NFAELAASSDTLEHLNLQYNFIYDVKGQV--------------------------------------------------- 188 (487)
T ss_dssp EGGGGGGGTTTCCEEECTTSCCCEEECCC---------------------------------------------------
T ss_pred ChHHHhhhCCcccEEecCCCccccccccc---------------------------------------------------
Confidence 666665 5777777777777765432111
Q ss_pred eccccccccceeeCCCCccCCCCcccccCCccCCeEeCCCcccCCCCCcCCCCCCCCCEEECCCCcCC-ccCchhhcCCC
Q 005038 531 YQGKVLSLLSGLDLSCNKLIGHIPPQIGNLTRIQTLNLSHNNLTGSIPSTFSNLKHVESLDLSNNKLN-GKIPHQLVELK 609 (717)
Q Consensus 531 ~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~N~i~-~~~p~~~~~l~ 609 (717)
.++.|+.|+|++|.+++..| .+..+++|+.|+|++|.+++ +|..+..+++|+.|++++|++. +.+|..+..++
T Consensus 189 ----~l~~L~~L~Ls~N~l~~~~~-~~~~l~~L~~L~Ls~N~l~~-lp~~l~~l~~L~~L~l~~N~l~c~~~~~~~~~l~ 262 (487)
T 3oja_A 189 ----VFAKLKTLDLSSNKLAFMGP-EFQSAAGVTWISLRNNKLVL-IEKALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQ 262 (487)
T ss_dssp ----CCTTCCEEECCSSCCCEECG-GGGGGTTCSEEECTTSCCCE-ECTTCCCCTTCCEEECTTCCBCHHHHHHHHTTCH
T ss_pred ----cCCCCCEEECCCCCCCCCCH-hHcCCCCccEEEecCCcCcc-cchhhccCCCCCEEEcCCCCCcCcchHHHHHhCC
Confidence 12356666666666664333 36666666666666666663 4555666666666666666665 34444555555
Q ss_pred CCCEEecc
Q 005038 610 TLEVFSVA 617 (717)
Q Consensus 610 ~L~~L~l~ 617 (717)
.|+.++++
T Consensus 263 ~L~~l~~~ 270 (487)
T 3oja_A 263 RVQTVAKQ 270 (487)
T ss_dssp HHHHHHHH
T ss_pred CCcEEecc
Confidence 55544443
No 67
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.93 E-value=6.9e-24 Score=232.39 Aligned_cols=129 Identities=28% Similarity=0.319 Sum_probs=90.8
Q ss_pred CCcCCEEeCCCCcCCcccchhhhCCCCCcEEEcCCCccccccchhccCCCCCCEEEccCCcCccCCCccccccccccccc
Q 005038 411 CSSLVTLDLSYNRLNGSIPDWVDGLSQLSHLILGHNNLEGEVSVQLCELNQLQLLDLSNNNLHGPIPPCFDNTTLHESYS 490 (717)
Q Consensus 411 ~~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~ 490 (717)
+++|+.|++++|.+++ +|. .+++|+.|++++|.++... . .+++|+.|++++|++++. |.
T Consensus 180 ~~~L~~L~Ls~N~l~~-l~~---~~~~L~~L~L~~N~l~~l~-~---~~~~L~~L~Ls~N~L~~l-p~------------ 238 (622)
T 3g06_A 180 PSGLQELSVSDNQLAS-LPT---LPSELYKLWAYNNRLTSLP-A---LPSGLKELIVSGNRLTSL-PV------------ 238 (622)
T ss_dssp CTTCCEEECCSSCCSC-CCC---CCTTCCEEECCSSCCSSCC-C---CCTTCCEEECCSSCCSCC-CC------------
T ss_pred CCCCcEEECCCCCCCC-CCC---ccchhhEEECcCCcccccC-C---CCCCCCEEEccCCccCcC-CC------------
Confidence 3566666666666663 232 2356777777777776332 2 246777788887777642 21
Q ss_pred CCCCCCcchhhhhhcccccccccccccceEEEeeccceeeeccccccccceeeCCCCccCCCCcccccCCccCCeEeCCC
Q 005038 491 NSSSPDEQFEIFFSIEGHQGFLEKQNHEIFEFTTKNIAYIYQGKVLSLLSGLDLSCNKLIGHIPPQIGNLTRIQTLNLSH 570 (717)
Q Consensus 491 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~ 570 (717)
.+++|+.|++++|+++. +|. .+++|+.|+|++
T Consensus 239 --------------------------------------------~l~~L~~L~Ls~N~L~~-lp~---~~~~L~~L~Ls~ 270 (622)
T 3g06_A 239 --------------------------------------------LPSELKELMVSGNRLTS-LPM---LPSGLLSLSVYR 270 (622)
T ss_dssp --------------------------------------------CCTTCCEEECCSSCCSC-CCC---CCTTCCEEECCS
T ss_pred --------------------------------------------CCCcCcEEECCCCCCCc-CCc---ccccCcEEeCCC
Confidence 12368888888888874 444 568899999999
Q ss_pred cccCCCCCcCCCCCCCCCEEECCCCcCCccCchhhcCCC
Q 005038 571 NNLTGSIPSTFSNLKHVESLDLSNNKLNGKIPHQLVELK 609 (717)
Q Consensus 571 n~l~~~~p~~~~~l~~L~~L~L~~N~i~~~~p~~~~~l~ 609 (717)
|+++ .+|..|.++++|+.|+|++|++++..|..+..++
T Consensus 271 N~L~-~lp~~l~~l~~L~~L~L~~N~l~~~~~~~l~~L~ 308 (622)
T 3g06_A 271 NQLT-RLPESLIHLSSETTVNLEGNPLSERTLQALREIT 308 (622)
T ss_dssp SCCC-SCCGGGGGSCTTCEEECCSCCCCHHHHHHHHHHH
T ss_pred CCCC-cCCHHHhhccccCEEEecCCCCCCcCHHHHHhcc
Confidence 9999 6788899999999999999999988887776654
No 68
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.93 E-value=2.7e-26 Score=232.76 Aligned_cols=209 Identities=23% Similarity=0.224 Sum_probs=113.9
Q ss_pred ccCCCCCCEEEccCCccccccchhhhhCCCCCCEEEccCcccCc-cCccccc-------CCCCCCeEECcCCcCcccCcc
Q 005038 239 FGNMKFLQILDLSNNHLTGEIPEHLAVGCVNLQFLALSNNNLQG-HLFSRNF-------NLTNLQWLQLEGNRFVGEIPQ 310 (717)
Q Consensus 239 l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~L~~L~L~~n~i~~-~~~~~~~-------~l~~L~~L~L~~n~l~~~~~~ 310 (717)
+...++|+.|++++|.+ .+|..+... |++|++++|.+.. ..+..+. ++++|++|++++|++.+..|.
T Consensus 39 ~~~~~~L~~l~l~~n~l--~~p~~~~~~---L~~L~L~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~ 113 (312)
T 1wwl_A 39 YGGGRSLEYLLKRVDTE--ADLGQFTDI---IKSLSLKRLTVRAARIPSRILFGALRVLGISGLQELTLENLEVTGTAPP 113 (312)
T ss_dssp EEEEEECTTHHHHCCTT--CCCHHHHHH---HHHCCCCEEEEEEEECBHHHHHHHHHHHTTSCCCEEEEEEEBCBSCCCC
T ss_pred EccCCCceeEeeccccc--ccHHHHHHH---HhhcccccccccCCCcCHHHHHHHHHhcCcCCccEEEccCCcccchhHH
Confidence 34445666777777776 566655532 6666676666632 2333332 466777777777777666665
Q ss_pred cc--cCCCCCCEEEccCCcCcCcCCcccCCC-----CCCCEEEccCCcccCCcccccCCCCCCCEEEccCCcCcccCCCc
Q 005038 311 SL--SKCSSLEGLYLNNNSLLGKIPRWLGNL-----TRLQYIIMPNNHLEGPIPVEFCQLDSLQILDISDNNISGSLPSC 383 (717)
Q Consensus 311 ~~--~~l~~L~~L~L~~n~~~~~~~~~~~~l-----~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~ 383 (717)
.+ ..+++|++|++++|.+.+. |..+..+ ++|++|++++|.+.+..+..+..+++|++|++++|++.+..+
T Consensus 114 ~~~~~~l~~L~~L~Ls~N~l~~~-~~~~~~l~~~~~~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~-- 190 (312)
T 1wwl_A 114 PLLEATGPDLNILNLRNVSWATR-DAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGERG-- 190 (312)
T ss_dssp CSSSCCSCCCSEEEEESCBCSSS-SSHHHHHHTTCCTTCCEEEEESCSCCCCCTTTCCCCSSCCEEECCSCTTCHHHH--
T ss_pred HHHHhcCCCccEEEccCCCCcch-hHHHHHHHHhhcCCCcEEEeeCCCCccchHHHhccCCCCCEEECCCCCcCcchH--
Confidence 54 6667777777777776654 5555444 666666666666665555666666666666666665442100
Q ss_pred cccccccEEeccCcccccccCccccCCCCcCCEEeCCCCcCCc---ccchhhhCCCCCcEEEcCCCccccccc-hhccCC
Q 005038 384 FHPLSIKQVHLSKNMLHGQLKRGTFFNCSSLVTLDLSYNRLNG---SIPDWVDGLSQLSHLILGHNNLEGEVS-VQLCEL 459 (717)
Q Consensus 384 ~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~L~~n~~~~---~~~~~~~~l~~L~~L~L~~n~l~~~~~-~~l~~l 459 (717)
......+..+++|++|++++|++++ .....+..+++|++|++++|++++..+ ..+..+
T Consensus 191 ------------------~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l 252 (312)
T 1wwl_A 191 ------------------LISALCPLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDWP 252 (312)
T ss_dssp ------------------HHHHSCTTSCTTCCEEECTTSCCCCHHHHHHHHHHTTCCCSEEECTTSCCCSSCCCSCCCCC
T ss_pred ------------------HHHHHHhccCCCCCEEECCCCcCcchHHHHHHHHhcCCCCCEEECCCCcCCcccchhhhhhc
Confidence 0001112455566666666666552 111223445555555555555554432 223334
Q ss_pred CCCCEEEccCCcCc
Q 005038 460 NQLQLLDLSNNNLH 473 (717)
Q Consensus 460 ~~L~~L~L~~n~l~ 473 (717)
++|++|++++|.++
T Consensus 253 ~~L~~L~Ls~N~l~ 266 (312)
T 1wwl_A 253 SQLNSLNLSFTGLK 266 (312)
T ss_dssp TTCCEEECTTSCCS
T ss_pred CCCCEEECCCCccC
Confidence 44444444444443
No 69
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.93 E-value=2.3e-26 Score=233.38 Aligned_cols=81 Identities=32% Similarity=0.433 Sum_probs=45.4
Q ss_pred ccceeeCCCCccCCCCc-ccccCCccCCeEeCCCcccCCCCCcCCCCCCCCCEEECCCCcCCccCchhhcCCCCCCEEec
Q 005038 538 LLSGLDLSCNKLIGHIP-PQIGNLTRIQTLNLSHNNLTGSIPSTFSNLKHVESLDLSNNKLNGKIPHQLVELKTLEVFSV 616 (717)
Q Consensus 538 ~L~~L~L~~n~l~~~~~-~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~N~i~~~~p~~~~~l~~L~~L~l 616 (717)
.|+.|++++|++++..| ..+..+++|++|+|++|+++ .+|..+. ++|++|+|++|++++. |. +..+++|++|++
T Consensus 229 ~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~Ls~N~l~-~ip~~~~--~~L~~L~Ls~N~l~~~-p~-~~~l~~L~~L~L 303 (312)
T 1wwl_A 229 QLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTGLK-QVPKGLP--AKLSVLDLSYNRLDRN-PS-PDELPQVGNLSL 303 (312)
T ss_dssp CCSEEECTTSCCCSSCCCSCCCCCTTCCEEECTTSCCS-SCCSSCC--SEEEEEECCSSCCCSC-CC-TTTSCEEEEEEC
T ss_pred CCCEEECCCCcCCcccchhhhhhcCCCCEEECCCCccC-hhhhhcc--CCceEEECCCCCCCCC-hh-HhhCCCCCEEec
Confidence 45555555555554432 23444556666666666666 4454444 5666666666666543 44 556666666666
Q ss_pred cCCcCee
Q 005038 617 AYNNLSG 623 (717)
Q Consensus 617 ~~N~l~~ 623 (717)
++|++++
T Consensus 304 ~~N~l~~ 310 (312)
T 1wwl_A 304 KGNPFLD 310 (312)
T ss_dssp TTCTTTC
T ss_pred cCCCCCC
Confidence 6666653
No 70
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.92 E-value=9.5e-26 Score=242.64 Aligned_cols=247 Identities=21% Similarity=0.225 Sum_probs=206.4
Q ss_pred CCCCCCEEEccCCcCcCcCCcccCCCCCCCEEEccCCcccCCcccccCCCCCCCEEEccCCcCcccCCCccccccccEEe
Q 005038 314 KCSSLEGLYLNNNSLLGKIPRWLGNLTRLQYIIMPNNHLEGPIPVEFCQLDSLQILDISDNNISGSLPSCFHPLSIKQVH 393 (717)
Q Consensus 314 ~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~L~~L~ 393 (717)
.+++|++|++++|.+.+..|..|..+++|+.|++++|.+++..+ +..+++|++|++++|.+.+.
T Consensus 32 ~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~l~~l-------------- 95 (487)
T 3oja_A 32 SAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDLNNNYVQEL-------------- 95 (487)
T ss_dssp TGGGCCEEECCSSCCCCCCGGGGTTCTTCCEEECTTSCCEEEEE--CTTCTTCCEEECCSSEEEEE--------------
T ss_pred cCCCccEEEeeCCcCCCCCHHHHhCCCCCCEEEeeCCCCCCCcc--cccCCCCCEEEecCCcCCCC--------------
Confidence 44589999999999998888899999999999999999987655 88999999999999987631
Q ss_pred ccCcccccccCccccCCCCcCCEEeCCCCcCCcccchhhhCCCCCcEEEcCCCccccccchhccCCCCCCEEEccCCcCc
Q 005038 394 LSKNMLHGQLKRGTFFNCSSLVTLDLSYNRLNGSIPDWVDGLSQLSHLILGHNNLEGEVSVQLCELNQLQLLDLSNNNLH 473 (717)
Q Consensus 394 l~~n~~~~~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~ 473 (717)
...++|++|++++|.+.+..+. .+++|+.|++++|.+++..+..+..+++|+.|++++|.++
T Consensus 96 ---------------~~~~~L~~L~L~~N~l~~~~~~---~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~ 157 (487)
T 3oja_A 96 ---------------LVGPSIETLHAANNNISRVSCS---RGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEID 157 (487)
T ss_dssp ---------------EECTTCCEEECCSSCCCCEEEC---CCSSCEEEECCSSCCCSGGGBCGGGGSSEEEEECTTSCCC
T ss_pred ---------------CCCCCcCEEECcCCcCCCCCcc---ccCCCCEEECCCCCCCCCCchhhcCCCCCCEEECCCCCCC
Confidence 1227899999999999976554 4689999999999999988888999999999999999998
Q ss_pred cCCCcccccccccccccCCCCCCcchhhhhhcccccccccccccceEEEeeccceeeeccccccccceeeCCCCccCCCC
Q 005038 474 GPIPPCFDNTTLHESYSNSSSPDEQFEIFFSIEGHQGFLEKQNHEIFEFTTKNIAYIYQGKVLSLLSGLDLSCNKLIGHI 553 (717)
Q Consensus 474 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~ 553 (717)
+..|..+.. .++.|+.|+|++|.+++.
T Consensus 158 ~~~~~~l~~----------------------------------------------------~l~~L~~L~Ls~N~l~~~- 184 (487)
T 3oja_A 158 TVNFAELAA----------------------------------------------------SSDTLEHLNLQYNFIYDV- 184 (487)
T ss_dssp EEEGGGGGG----------------------------------------------------GTTTCCEEECTTSCCCEE-
T ss_pred CcChHHHhh----------------------------------------------------hCCcccEEecCCCccccc-
Confidence 876655431 134799999999999865
Q ss_pred cccccCCccCCeEeCCCcccCCCCCcCCCCCCCCCEEECCCCcCCccCchhhcCCCCCCEEeccCCcCe-ecCCCCCccc
Q 005038 554 PPQIGNLTRIQTLNLSHNNLTGSIPSTFSNLKHVESLDLSNNKLNGKIPHQLVELKTLEVFSVAYNNLS-GEIPEWKAQF 632 (717)
Q Consensus 554 ~~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~N~i~~~~p~~~~~l~~L~~L~l~~N~l~-~~~p~~~~~~ 632 (717)
| .+..+++|++|+|++|.+++..| .+..+++|+.|+|++|++++ +|..+..+++|+.|++++|++. +.+|.++..+
T Consensus 185 ~-~~~~l~~L~~L~Ls~N~l~~~~~-~~~~l~~L~~L~Ls~N~l~~-lp~~l~~l~~L~~L~l~~N~l~c~~~~~~~~~l 261 (487)
T 3oja_A 185 K-GQVVFAKLKTLDLSSNKLAFMGP-EFQSAAGVTWISLRNNKLVL-IEKALRFSQNLEHFDLRGNGFHCGTLRDFFSKN 261 (487)
T ss_dssp E-CCCCCTTCCEEECCSSCCCEECG-GGGGGTTCSEEECTTSCCCE-ECTTCCCCTTCCEEECTTCCBCHHHHHHHHTTC
T ss_pred c-ccccCCCCCEEECCCCCCCCCCH-hHcCCCCccEEEecCCcCcc-cchhhccCCCCCEEEcCCCCCcCcchHHHHHhC
Confidence 3 34468999999999999996555 58999999999999999994 7778899999999999999998 5667766666
Q ss_pred CCCCccccc-------CCcCCCCCC
Q 005038 633 ATFNESSYE-------GNTFLCGLP 650 (717)
Q Consensus 633 ~~l~~~~~~-------~n~~~c~~~ 650 (717)
..+..+... ++++.|.++
T Consensus 262 ~~L~~l~~~~~~~~~~~~~~~c~~~ 286 (487)
T 3oja_A 262 QRVQTVAKQTVKKLTGQNEEECTVP 286 (487)
T ss_dssp HHHHHHHHHHHHHHTSSSSCCCSST
T ss_pred CCCcEEeccccccccCCCcccccCC
Confidence 666555554 788888765
No 71
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.92 E-value=3.8e-28 Score=270.94 Aligned_cols=82 Identities=12% Similarity=0.045 Sum_probs=42.1
Q ss_pred ccceeeCCCCccCCCCcccc-cCCccCCeEeCCCcccCCCCCc-CCCCCCCCCEEECCCCcCCccCchhh-cCCCCCCEE
Q 005038 538 LLSGLDLSCNKLIGHIPPQI-GNLTRIQTLNLSHNNLTGSIPS-TFSNLKHVESLDLSNNKLNGKIPHQL-VELKTLEVF 614 (717)
Q Consensus 538 ~L~~L~L~~n~l~~~~~~~l-~~l~~L~~L~Ls~n~l~~~~p~-~~~~l~~L~~L~L~~N~i~~~~p~~~-~~l~~L~~L 614 (717)
+|+.|++++|.+++..+..+ ..+++|++|+|++|.+++..+. ....+++|++|++++|+++......+ ..++.|+..
T Consensus 457 ~L~~L~L~~~~i~~~~~~~l~~~~~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~~lp~l~i~ 536 (594)
T 2p1m_B 457 KMEMLSVAFAGDSDLGMHHVLSGCDSLRKLEIRDCPFGDKALLANASKLETMRSLWMSSCSVSFGACKLLGQKMPKLNVE 536 (594)
T ss_dssp TCCEEEEESCCSSHHHHHHHHHHCTTCCEEEEESCSCCHHHHHHTGGGGGGSSEEEEESSCCBHHHHHHHHHHCTTEEEE
T ss_pred hccEeeccCCCCcHHHHHHHHhcCCCcCEEECcCCCCcHHHHHHHHHhCCCCCEEeeeCCCCCHHHHHHHHHhCCCCEEE
Confidence 56666666666554333333 4456666666666666432222 23345666666666666643222233 345555554
Q ss_pred eccCC
Q 005038 615 SVAYN 619 (717)
Q Consensus 615 ~l~~N 619 (717)
.+..+
T Consensus 537 ~~~~~ 541 (594)
T 2p1m_B 537 VIDER 541 (594)
T ss_dssp EECSS
T ss_pred EecCC
Confidence 44444
No 72
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.92 E-value=4.3e-28 Score=270.48 Aligned_cols=431 Identities=13% Similarity=0.079 Sum_probs=249.4
Q ss_pred CcccccCCCCCCeeeCCCCCCCC---Cc------------chhccCCCCCCEEeCCCCCCcccCCccccC-CCCCCCEEE
Q 005038 11 RSQGLCSLVHLQELYIASNDLRG---SL------------PWCMANMTSLRILDVSSNQLTGSISSSPLV-HLTSIEELM 74 (717)
Q Consensus 11 ~~~~~~~l~~L~~L~Ls~n~i~~---~~------------~~~~~~l~~L~~L~Ls~n~i~~~i~~~~~~-~l~~L~~L~ 74 (717)
|...+.++++|++|+++++.... .. +.....+++|++|+|++|.+++..+. .+. .+++|++|+
T Consensus 58 ~~~~~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~~~~-~l~~~~~~L~~L~ 136 (594)
T 2p1m_B 58 PATVIRRFPKVRSVELKGKPHFADFNLVPDGWGGYVYPWIEAMSSSYTWLEEIRLKRMVVTDDCLE-LIAKSFKNFKVLV 136 (594)
T ss_dssp HHHHHHHCTTCCEEEEECSCGGGGGTCSCTTSCCBCHHHHHHHHHHCTTCCEEEEESCBCCHHHHH-HHHHHCTTCCEEE
T ss_pred HHHHHhhCCCceEEeccCCCchhhcccccccccchhhHHHHHHHHhCCCCCeEEeeCcEEcHHHHH-HHHHhCCCCcEEe
Confidence 33456788999999999875211 11 12234688999999999988754444 343 688999999
Q ss_pred CCCC-cccCcCCcccccCCCCCCEEEccCCccccccccccccc-CCCccccEEEccCCC-CCC-CCCchhhcCCCCCCEE
Q 005038 75 LSNN-YFQIPISLEPLFNYSRLKIFNAENNEIKAEITESHSLI-APKFQLNTLSLSSNY-GDG-FIFPKFLYHQHDLEYV 150 (717)
Q Consensus 75 L~~n-~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~-~~~~~L~~L~l~~~~-~~~-~~~~~~l~~~~~L~~L 150 (717)
+++| .++.......+.++++|++|++++|.+++........+ ..+++|++|+++.+. ... ..+......+++|++|
T Consensus 137 L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~l~~l~~~~~~L~~L 216 (594)
T 2p1m_B 137 LSSCEGFSTDGLAAIAATCRNLKELDLRESDVDDVSGHWLSHFPDTYTSLVSLNISCLASEVSFSALERLVTRCPNLKSL 216 (594)
T ss_dssp EESCEEEEHHHHHHHHHHCTTCCEEECTTCEEECCCGGGGGGSCTTCCCCCEEECTTCCSCCCHHHHHHHHHHCTTCCEE
T ss_pred CCCcCCCCHHHHHHHHHhCCCCCEEeCcCCccCCcchHHHHHHhhcCCcCcEEEecccCCcCCHHHHHHHHHhCCCCcEE
Confidence 9988 44321121233478999999999998776554433322 356689999995443 111 1122334567889999
Q ss_pred EccCCCCcccCChhhhhCCCCCCEEEccCCcC-------cccCccCcCCCCCcCEE-EccCCcCCccCCccccccCCCCc
Q 005038 151 DLSHIKMNGEFPNWLLENNTKLETLFLVNDSL-------AGPFRLPIHSHKRLRQL-DVSNNNIRGHIPVKIGDVLPSLY 222 (717)
Q Consensus 151 ~l~~~~~~~~~~~~~~~~~~~L~~L~l~~n~~-------~~~~~~~~~~~~~L~~L-~ls~n~i~~~~~~~~~~~l~~L~ 222 (717)
++++|...+.++.. +..+++|+.|.+..+.. .+ .+..+.++++|+.| .+.+... +.++. +...+++|+
T Consensus 217 ~L~~~~~~~~l~~~-~~~~~~L~~L~l~~~~~~~~~~~~~~-l~~~l~~~~~L~~Ls~~~~~~~-~~l~~-~~~~~~~L~ 292 (594)
T 2p1m_B 217 KLNRAVPLEKLATL-LQRAPQLEELGTGGYTAEVRPDVYSG-LSVALSGCKELRCLSGFWDAVP-AYLPA-VYSVCSRLT 292 (594)
T ss_dssp ECCTTSCHHHHHHH-HHHCTTCSEEECSBCCCCCCHHHHHH-HHHHHHTCTTCCEEECCBTCCG-GGGGG-GHHHHTTCC
T ss_pred ecCCCCcHHHHHHH-HhcCCcceEcccccccCccchhhHHH-HHHHHhcCCCcccccCCcccch-hhHHH-HHHhhCCCC
Confidence 99888333334444 46788888888765532 22 22356677888887 3433221 12222 222357788
Q ss_pred EEECCCCCCCccC-CccccCCCCCCEEEccCCccccccchhhhhCCCCCCEEEccC---------cccCccCccccc-CC
Q 005038 223 VFNNSMNALDGSI-PSSFGNMKFLQILDLSNNHLTGEIPEHLAVGCVNLQFLALSN---------NNLQGHLFSRNF-NL 291 (717)
Q Consensus 223 ~L~l~~n~~~~~~-~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~L~~L~L~~---------n~i~~~~~~~~~-~l 291 (717)
+|++++|.+++.. +..+..+++|++|++++| +.+.....+...+++|++|+++. +.+++.....+. .+
T Consensus 293 ~L~L~~~~l~~~~l~~~~~~~~~L~~L~l~~~-~~~~~l~~l~~~~~~L~~L~L~~~~~~g~~~~~~l~~~~l~~l~~~~ 371 (594)
T 2p1m_B 293 TLNLSYATVQSYDLVKLLCQCPKLQRLWVLDY-IEDAGLEVLASTCKDLRELRVFPSEPFVMEPNVALTEQGLVSVSMGC 371 (594)
T ss_dssp EEECTTCCCCHHHHHHHHTTCTTCCEEEEEGG-GHHHHHHHHHHHCTTCCEEEEECSCTTCSSCSSCCCHHHHHHHHHHC
T ss_pred EEEccCCCCCHHHHHHHHhcCCCcCEEeCcCc-cCHHHHHHHHHhCCCCCEEEEecCcccccccCCCCCHHHHHHHHHhc
Confidence 8888877765322 222456777888888777 44333334444577788887733 333322222222 36
Q ss_pred CCCCeEECcCCcCcccCccccc-CCCCCCEEEcc--C----CcCcCc-----CCcccCCCCCCCEEEccCCcccCCcccc
Q 005038 292 TNLQWLQLEGNRFVGEIPQSLS-KCSSLEGLYLN--N----NSLLGK-----IPRWLGNLTRLQYIIMPNNHLEGPIPVE 359 (717)
Q Consensus 292 ~~L~~L~L~~n~l~~~~~~~~~-~l~~L~~L~L~--~----n~~~~~-----~~~~~~~l~~L~~L~l~~n~~~~~~~~~ 359 (717)
++|++|.+..+.+++.....+. .+++|+.|+++ + +.+++. ++..+..+++|+.|++++ .+++.....
T Consensus 372 ~~L~~L~~~~~~l~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~~~l~~~~~~L~~L~L~~-~l~~~~~~~ 450 (594)
T 2p1m_B 372 PKLESVLYFCRQMTNAALITIARNRPNMTRFRLCIIEPKAPDYLTLEPLDIGFGAIVEHCKDLRRLSLSG-LLTDKVFEY 450 (594)
T ss_dssp TTCCEEEEEESCCCHHHHHHHHHHCTTCCEEEEEESSTTCCCTTTCCCTHHHHHHHHHHCTTCCEEECCS-SCCHHHHHH
T ss_pred hhHHHHHHhcCCcCHHHHHHHHhhCCCcceeEeecccCCCcccccCCchhhHHHHHHhhCCCccEEeecC-cccHHHHHH
Confidence 6777776666666554433333 46677777776 2 233311 111134455666666654 333322223
Q ss_pred cCC-CCCCCEEEccCCcCcccCCCccccccccEEeccCcccccccCccccCCCCcCCEEeCCCCcCCcccch-hhhCCCC
Q 005038 360 FCQ-LDSLQILDISDNNISGSLPSCFHPLSIKQVHLSKNMLHGQLKRGTFFNCSSLVTLDLSYNRLNGSIPD-WVDGLSQ 437 (717)
Q Consensus 360 ~~~-l~~L~~L~l~~n~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~L~~n~~~~~~~~-~~~~l~~ 437 (717)
+.. +++|+.|++++|.++ +.........+++|++|++++|.+++.... ....+++
T Consensus 451 l~~~~~~L~~L~L~~~~i~-----------------------~~~~~~l~~~~~~L~~L~L~~n~~~~~~~~~~~~~l~~ 507 (594)
T 2p1m_B 451 IGTYAKKMEMLSVAFAGDS-----------------------DLGMHHVLSGCDSLRKLEIRDCPFGDKALLANASKLET 507 (594)
T ss_dssp HHHHCTTCCEEEEESCCSS-----------------------HHHHHHHHHHCTTCCEEEEESCSCCHHHHHHTGGGGGG
T ss_pred HHHhchhccEeeccCCCCc-----------------------HHHHHHHHhcCCCcCEEECcCCCCcHHHHHHHHHhCCC
Confidence 322 455666666555543 222222124567788888888877543332 3345778
Q ss_pred CcEEEcCCCccccccchhc-cCCCCCCEEEccCCc
Q 005038 438 LSHLILGHNNLEGEVSVQL-CELNQLQLLDLSNNN 471 (717)
Q Consensus 438 L~~L~L~~n~l~~~~~~~l-~~l~~L~~L~L~~n~ 471 (717)
|+.|++++|+++......+ ..+|.|+...+..+.
T Consensus 508 L~~L~l~~~~~~~~~~~~l~~~lp~l~i~~~~~~~ 542 (594)
T 2p1m_B 508 MRSLWMSSCSVSFGACKLLGQKMPKLNVEVIDERG 542 (594)
T ss_dssp SSEEEEESSCCBHHHHHHHHHHCTTEEEEEECSSS
T ss_pred CCEEeeeCCCCCHHHHHHHHHhCCCCEEEEecCCC
Confidence 8888888887754434334 456777666666554
No 73
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.92 E-value=6.4e-24 Score=211.61 Aligned_cols=209 Identities=25% Similarity=0.304 Sum_probs=131.7
Q ss_pred CCCEEEccCCcccCCcccccCCCCCCCEEEccCCcCcccCCCccccccccEEeccCcccccccCccccCCCCcCCEEeCC
Q 005038 341 RLQYIIMPNNHLEGPIPVEFCQLDSLQILDISDNNISGSLPSCFHPLSIKQVHLSKNMLHGQLKRGTFFNCSSLVTLDLS 420 (717)
Q Consensus 341 ~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~L~ 420 (717)
+++.|++++|.+++..+..|..+++|++|++++|.+.+. +...|..+++|++|+++
T Consensus 29 ~l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~------------------------~~~~~~~l~~L~~L~L~ 84 (276)
T 2z62_A 29 STKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTI------------------------EDGAYQSLSHLSTLILT 84 (276)
T ss_dssp TCCEEECTTCCCCEECTTTTTTCTTCSEEECTTCCCCEE------------------------CTTTTTTCTTCCEEECT
T ss_pred CccEEECCCCcccccCHhHhccccCCcEEECCCCcCCcc------------------------CHHHccCCcCCCEEECC
Confidence 455555555555544444555555555555555554421 22224555566666666
Q ss_pred CCcCCcccchhhhCCCCCcEEEcCCCccccccchhccCCCCCCEEEccCCcCccC-CCcccccccccccccCCCCCCcch
Q 005038 421 YNRLNGSIPDWVDGLSQLSHLILGHNNLEGEVSVQLCELNQLQLLDLSNNNLHGP-IPPCFDNTTLHESYSNSSSPDEQF 499 (717)
Q Consensus 421 ~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~-~~~~~~~~~~~~~~~~~~~~~~~~ 499 (717)
+|.+.+..+..+.++++|++|++++|++++..+..+..+++|++|++++|.+++. +|..+..+
T Consensus 85 ~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~l~~~~~~l---------------- 148 (276)
T 2z62_A 85 GNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNL---------------- 148 (276)
T ss_dssp TCCCCEECTTTTTTCTTCCEEECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGC----------------
T ss_pred CCccCccChhhhcCCccccEEECCCCCccccCchhcccCCCCCEEECcCCccceecCchhhccC----------------
Confidence 6666655555566666666666666666655555566666666666666666543 24444332
Q ss_pred hhhhhcccccccccccccceEEEeeccceeeeccccccccceeeCCCCccCCCCcccccCCccCC----eEeCCCcccCC
Q 005038 500 EIFFSIEGHQGFLEKQNHEIFEFTTKNIAYIYQGKVLSLLSGLDLSCNKLIGHIPPQIGNLTRIQ----TLNLSHNNLTG 575 (717)
Q Consensus 500 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~----~L~Ls~n~l~~ 575 (717)
++|+.|++++|++++..+..+..+++|+ +|++++|.+++
T Consensus 149 -------------------------------------~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~l~l~L~ls~n~l~~ 191 (276)
T 2z62_A 149 -------------------------------------TNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNF 191 (276)
T ss_dssp -------------------------------------TTCCEEECCSSCCCEECGGGGHHHHTCTTCCEEEECCSSCCCE
T ss_pred -------------------------------------CCCCEEECCCCCCCcCCHHHhhhhhhccccceeeecCCCcccc
Confidence 2566677777776666566666666666 78888888886
Q ss_pred CCCcCCCCCCCCCEEECCCCcCCccCchhhcCCCCCCEEeccCCcCeecCCC
Q 005038 576 SIPSTFSNLKHVESLDLSNNKLNGKIPHQLVELKTLEVFSVAYNNLSGEIPE 627 (717)
Q Consensus 576 ~~p~~~~~l~~L~~L~L~~N~i~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~ 627 (717)
..+..+.. .+|++|++++|++++..+..+..+++|+.|++++|++++.+|.
T Consensus 192 ~~~~~~~~-~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~c~c~~ 242 (276)
T 2z62_A 192 IQPGAFKE-IRLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPR 242 (276)
T ss_dssp ECTTSSCS-CCEEEEECCSSCCSCCCTTTTTTCCSCCEEECCSSCBCCCTTT
T ss_pred cCccccCC-CcccEEECCCCceeecCHhHhcccccccEEEccCCcccccCCc
Confidence 55555543 4788888888888866666678888888888888888887764
No 74
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.92 E-value=1.5e-23 Score=207.98 Aligned_cols=206 Identities=25% Similarity=0.308 Sum_probs=148.4
Q ss_pred CCCEEEccCCcCcccCCCccccccccEEeccCcccccccCccccCCCCcCCEEeCCCCcCCcccchhhhCCCCCcEEEcC
Q 005038 365 SLQILDISDNNISGSLPSCFHPLSIKQVHLSKNMLHGQLKRGTFFNCSSLVTLDLSYNRLNGSIPDWVDGLSQLSHLILG 444 (717)
Q Consensus 365 ~L~~L~l~~n~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~L~ 444 (717)
..+.++++++.++. +|..+ +.+++.|++++|.+.+ ++...|..+++|++|++++|.++...+..|.++++|++|+++
T Consensus 17 ~~~~l~~~~~~l~~-ip~~~-~~~l~~L~l~~n~l~~-~~~~~~~~l~~L~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~ 93 (270)
T 2o6q_A 17 NKNSVDCSSKKLTA-IPSNI-PADTKKLDLQSNKLSS-LPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWVT 93 (270)
T ss_dssp TTTEEECTTSCCSS-CCSCC-CTTCSEEECCSSCCSC-CCTTSSSSCTTCCEEECCSSCCSCCCTTTTSSCTTCCEEECC
T ss_pred CCCEEEccCCCCCc-cCCCC-CCCCCEEECcCCCCCe-eCHHHhcCCCCCCEEECCCCccCeeChhhhcCCCCCCEEECC
Confidence 56788888888874 33322 3567788888887743 444457777888888888887776666666777788888888
Q ss_pred CCccccccchhccCCCCCCEEEccCCcCccCCCcccccccccccccCCCCCCcchhhhhhcccccccccccccceEEEee
Q 005038 445 HNNLEGEVSVQLCELNQLQLLDLSNNNLHGPIPPCFDNTTLHESYSNSSSPDEQFEIFFSIEGHQGFLEKQNHEIFEFTT 524 (717)
Q Consensus 445 ~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 524 (717)
+|++++..+..+..+++|++|++++|.+++..+..|..+
T Consensus 94 ~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l----------------------------------------- 132 (270)
T 2o6q_A 94 DNKLQALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSL----------------------------------------- 132 (270)
T ss_dssp SSCCCCCCTTTTTTCSSCCEEECCSSCCCCCCTTTTTTC-----------------------------------------
T ss_pred CCcCCcCCHhHcccccCCCEEECCCCccCeeCHHHhCcC-----------------------------------------
Confidence 888777666677777788888888877776665554443
Q ss_pred ccceeeeccccccccceeeCCCCccCCCCcccccCCccCCeEeCCCcccCCCCCcCCCCCCCCCEEECCCCcCCccCchh
Q 005038 525 KNIAYIYQGKVLSLLSGLDLSCNKLIGHIPPQIGNLTRIQTLNLSHNNLTGSIPSTFSNLKHVESLDLSNNKLNGKIPHQ 604 (717)
Q Consensus 525 ~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~N~i~~~~p~~ 604 (717)
++|+.|++++|++.+..+..|..+++|++|++++|++++..+..|..+++|++|++++|++++..+..
T Consensus 133 ------------~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~ 200 (270)
T 2o6q_A 133 ------------TKLTYLSLGYNELQSLPKGVFDKLTSLKELRLYNNQLKRVPEGAFDKLTELKTLKLDNNQLKRVPEGA 200 (270)
T ss_dssp ------------TTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCCSCCCTTT
T ss_pred ------------cCCCEEECCCCcCCccCHhHccCCcccceeEecCCcCcEeChhHhccCCCcCEEECCCCcCCcCCHHH
Confidence 26777788877777666666777777888888877777666666777777888888887777655566
Q ss_pred hcCCCCCCEEeccCCcCeecCC
Q 005038 605 LVELKTLEVFSVAYNNLSGEIP 626 (717)
Q Consensus 605 ~~~l~~L~~L~l~~N~l~~~~p 626 (717)
+..+++|+.|++++|++.+..+
T Consensus 201 ~~~l~~L~~L~l~~N~~~c~c~ 222 (270)
T 2o6q_A 201 FDSLEKLKMLQLQENPWDCTCN 222 (270)
T ss_dssp TTTCTTCCEEECCSSCBCCSSS
T ss_pred hccccCCCEEEecCCCeeCCCc
Confidence 7777777777777777776654
No 75
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.91 E-value=6.3e-24 Score=211.65 Aligned_cols=207 Identities=26% Similarity=0.283 Sum_probs=173.9
Q ss_pred ccEEeccCcccccccCccccCCCCcCCEEeCCCCcCCcccchhhhCCCCCcEEEcCCCccccccchhccCCCCCCEEEcc
Q 005038 389 IKQVHLSKNMLHGQLKRGTFFNCSSLVTLDLSYNRLNGSIPDWVDGLSQLSHLILGHNNLEGEVSVQLCELNQLQLLDLS 468 (717)
Q Consensus 389 L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~ 468 (717)
++.|++++|.+. .++...|..+++|++|++++|.+.+..+..+.++++|++|++++|++++..+..+..+++|++|+++
T Consensus 30 l~~L~ls~n~l~-~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~ 108 (276)
T 2z62_A 30 TKNLDLSFNPLR-HLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAV 108 (276)
T ss_dssp CCEEECTTCCCC-EECTTTTTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECT
T ss_pred ccEEECCCCccc-ccCHhHhccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCccCccChhhhcCCccccEEECC
Confidence 333333333332 2333348889999999999999998878889999999999999999998888899999999999999
Q ss_pred CCcCccCCCcccccccccccccCCCCCCcchhhhhhcccccccccccccceEEEeeccceeeeccccccccceeeCCCCc
Q 005038 469 NNNLHGPIPPCFDNTTLHESYSNSSSPDEQFEIFFSIEGHQGFLEKQNHEIFEFTTKNIAYIYQGKVLSLLSGLDLSCNK 548 (717)
Q Consensus 469 ~n~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~ 548 (717)
+|.+.+..+..+..+ ++|++|++++|+
T Consensus 109 ~n~l~~~~~~~~~~l-----------------------------------------------------~~L~~L~l~~n~ 135 (276)
T 2z62_A 109 ETNLASLENFPIGHL-----------------------------------------------------KTLKELNVAHNL 135 (276)
T ss_dssp TSCCCCSTTCCCTTC-----------------------------------------------------TTCCEEECCSSC
T ss_pred CCCccccCchhcccC-----------------------------------------------------CCCCEEECcCCc
Confidence 999987666554443 379999999999
Q ss_pred cCCC-CcccccCCccCCeEeCCCcccCCCCCcCCCCCCCCC----EEECCCCcCCccCchhhcCCCCCCEEeccCCcCee
Q 005038 549 LIGH-IPPQIGNLTRIQTLNLSHNNLTGSIPSTFSNLKHVE----SLDLSNNKLNGKIPHQLVELKTLEVFSVAYNNLSG 623 (717)
Q Consensus 549 l~~~-~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~----~L~L~~N~i~~~~p~~~~~l~~L~~L~l~~N~l~~ 623 (717)
+.+. +|..+..+++|++|++++|++++..+..+..+++|+ +|++++|++++..+..+ ...+|+.|++++|.+++
T Consensus 136 l~~~~l~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~l~l~L~ls~n~l~~~~~~~~-~~~~L~~L~L~~n~l~~ 214 (276)
T 2z62_A 136 IQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAF-KEIRLKELALDTNQLKS 214 (276)
T ss_dssp CCCCCCCGGGGGCTTCCEEECCSSCCCEECGGGGHHHHTCTTCCEEEECCSSCCCEECTTSS-CSCCEEEEECCSSCCSC
T ss_pred cceecCchhhccCCCCCEEECCCCCCCcCCHHHhhhhhhccccceeeecCCCcccccCcccc-CCCcccEEECCCCceee
Confidence 9874 588999999999999999999988888888777777 99999999996665555 44589999999999997
Q ss_pred cCCCCCcccCCCCcccccCCcCCCCCC
Q 005038 624 EIPEWKAQFATFNESSYEGNTFLCGLP 650 (717)
Q Consensus 624 ~~p~~~~~~~~l~~~~~~~n~~~c~~~ 650 (717)
..+..+..+.+++.+.+.+||+.|+|+
T Consensus 215 ~~~~~~~~l~~L~~L~l~~N~~~c~c~ 241 (276)
T 2z62_A 215 VPDGIFDRLTSLQKIWLHTNPWDCSCP 241 (276)
T ss_dssp CCTTTTTTCCSCCEEECCSSCBCCCTT
T ss_pred cCHhHhcccccccEEEccCCcccccCC
Confidence 777777889999999999999999986
No 76
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.91 E-value=2.8e-23 Score=207.56 Aligned_cols=205 Identities=24% Similarity=0.270 Sum_probs=130.8
Q ss_pred cCCCCCCCEEEccCCcCcccCCCccccccccEEeccCcccccccCccccCCCCcCCEEeCCCCcCCcccchhhhCCCCCc
Q 005038 360 FCQLDSLQILDISDNNISGSLPSCFHPLSIKQVHLSKNMLHGQLKRGTFFNCSSLVTLDLSYNRLNGSIPDWVDGLSQLS 439 (717)
Q Consensus 360 ~~~l~~L~~L~l~~n~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~~~~l~~L~ 439 (717)
+..++++++++++++.++...+.. +..++.|++++|.+.+. ....|..+++|++|++++|.+++..+. ..+++|+
T Consensus 6 ~~~l~~l~~l~~~~~~l~~ip~~~--~~~l~~L~L~~N~l~~~-~~~~~~~l~~L~~L~L~~n~l~~~~~~--~~l~~L~ 80 (290)
T 1p9a_G 6 VSKVASHLEVNCDKRNLTALPPDL--PKDTTILHLSENLLYTF-SLATLMPYTRLTQLNLDRAELTKLQVD--GTLPVLG 80 (290)
T ss_dssp EECSTTCCEEECTTSCCSSCCSCC--CTTCCEEECTTSCCSEE-EGGGGTTCTTCCEEECTTSCCCEEECC--SCCTTCC
T ss_pred ccccCCccEEECCCCCCCcCCCCC--CCCCCEEEcCCCcCCcc-CHHHhhcCCCCCEEECCCCccCcccCC--CCCCcCC
Confidence 556778888888888887443322 24666777777766433 233366667777777777766643332 5566777
Q ss_pred EEEcCCCccccccchhccCCCCCCEEEccCCcCccCCCcccccccccccccCCCCCCcchhhhhhcccccccccccccce
Q 005038 440 HLILGHNNLEGEVSVQLCELNQLQLLDLSNNNLHGPIPPCFDNTTLHESYSNSSSPDEQFEIFFSIEGHQGFLEKQNHEI 519 (717)
Q Consensus 440 ~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 519 (717)
+|++++|+++ ..|..+..+++|++|++++|++++..+..|..+.
T Consensus 81 ~L~Ls~N~l~-~l~~~~~~l~~L~~L~l~~N~l~~l~~~~~~~l~----------------------------------- 124 (290)
T 1p9a_G 81 TLDLSHNQLQ-SLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLG----------------------------------- 124 (290)
T ss_dssp EEECCSSCCS-SCCCCTTTCTTCCEEECCSSCCCCCCSSTTTTCT-----------------------------------
T ss_pred EEECCCCcCC-cCchhhccCCCCCEEECCCCcCcccCHHHHcCCC-----------------------------------
Confidence 7777777766 3445566666777777777766655555444432
Q ss_pred EEEeeccceeeeccccccccceeeCCCCccCCCCcccccCCccCCeEeCCCcccCCCCCcCCCCCCCCCEEECCCCcCCc
Q 005038 520 FEFTTKNIAYIYQGKVLSLLSGLDLSCNKLIGHIPPQIGNLTRIQTLNLSHNNLTGSIPSTFSNLKHVESLDLSNNKLNG 599 (717)
Q Consensus 520 ~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~N~i~~ 599 (717)
+|+.|+|++|++++..+..|..+++|+.|+|++|++++..+..|..+++|++|+|++|+++
T Consensus 125 ------------------~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~- 185 (290)
T 1p9a_G 125 ------------------ELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLY- 185 (290)
T ss_dssp ------------------TCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCSCCCTTTTTTCTTCCEEECCSSCCC-
T ss_pred ------------------CCCEEECCCCCCCccChhhcccccCCCEEECCCCcCCccCHHHhcCcCCCCEEECCCCcCC-
Confidence 5666777777766655555666667777777777776555555666667777777777766
Q ss_pred cCchhhcCCCCCCEEeccCCcCeec
Q 005038 600 KIPHQLVELKTLEVFSVAYNNLSGE 624 (717)
Q Consensus 600 ~~p~~~~~l~~L~~L~l~~N~l~~~ 624 (717)
.+|..+....+|+.+++++|++.+.
T Consensus 186 ~ip~~~~~~~~L~~l~L~~Np~~C~ 210 (290)
T 1p9a_G 186 TIPKGFFGSHLLPFAFLHGNPWLCN 210 (290)
T ss_dssp CCCTTTTTTCCCSEEECCSCCBCCS
T ss_pred ccChhhcccccCCeEEeCCCCccCc
Confidence 5566666666677777777766654
No 77
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.91 E-value=6.9e-23 Score=203.11 Aligned_cols=206 Identities=23% Similarity=0.250 Sum_probs=154.2
Q ss_pred cccEEeccCcccccccCccccCCCCcCCEEeCCCCcCCcccchhhhCCCCCcEEEcCCCccccccchhccCCCCCCEEEc
Q 005038 388 SIKQVHLSKNMLHGQLKRGTFFNCSSLVTLDLSYNRLNGSIPDWVDGLSQLSHLILGHNNLEGEVSVQLCELNQLQLLDL 467 (717)
Q Consensus 388 ~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L 467 (717)
..+.++++++.+. .++.. + .+++++|++++|.+.+..+..|.++++|++|++++|++++..+..|..+++|++|++
T Consensus 17 ~~~~l~~~~~~l~-~ip~~-~--~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~i~~~~~~~l~~L~~L~l 92 (270)
T 2o6q_A 17 NKNSVDCSSKKLT-AIPSN-I--PADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWV 92 (270)
T ss_dssp TTTEEECTTSCCS-SCCSC-C--CTTCSEEECCSSCCSCCCTTSSSSCTTCCEEECCSSCCSCCCTTTTSSCTTCCEEEC
T ss_pred CCCEEEccCCCCC-ccCCC-C--CCCCCEEECcCCCCCeeCHHHhcCCCCCCEEECCCCccCeeChhhhcCCCCCCEEEC
Confidence 4667778777775 34443 2 256788888888887666667778888888888888887666666777888888888
Q ss_pred cCCcCccCCCcccccccccccccCCCCCCcchhhhhhcccccccccccccceEEEeeccceeeeccccccccceeeCCCC
Q 005038 468 SNNNLHGPIPPCFDNTTLHESYSNSSSPDEQFEIFFSIEGHQGFLEKQNHEIFEFTTKNIAYIYQGKVLSLLSGLDLSCN 547 (717)
Q Consensus 468 ~~n~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n 547 (717)
++|.+.+..+..|..+ ++|++|++++|
T Consensus 93 ~~n~l~~~~~~~~~~l-----------------------------------------------------~~L~~L~l~~n 119 (270)
T 2o6q_A 93 TDNKLQALPIGVFDQL-----------------------------------------------------VNLAELRLDRN 119 (270)
T ss_dssp CSSCCCCCCTTTTTTC-----------------------------------------------------SSCCEEECCSS
T ss_pred CCCcCCcCCHhHcccc-----------------------------------------------------cCCCEEECCCC
Confidence 8888776555544443 36888888888
Q ss_pred ccCCCCcccccCCccCCeEeCCCcccCCCCCcCCCCCCCCCEEECCCCcCCccCchhhcCCCCCCEEeccCCcCeecCCC
Q 005038 548 KLIGHIPPQIGNLTRIQTLNLSHNNLTGSIPSTFSNLKHVESLDLSNNKLNGKIPHQLVELKTLEVFSVAYNNLSGEIPE 627 (717)
Q Consensus 548 ~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~N~i~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~ 627 (717)
++++..+..|..+++|++|+|++|.+++..+..|..+++|++|++++|++++..+..|..+++|++|++++|++++..+.
T Consensus 120 ~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~ 199 (270)
T 2o6q_A 120 QLKSLPPRVFDSLTKLTYLSLGYNELQSLPKGVFDKLTSLKELRLYNNQLKRVPEGAFDKLTELKTLKLDNNQLKRVPEG 199 (270)
T ss_dssp CCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCCSCCCTT
T ss_pred ccCeeCHHHhCcCcCCCEEECCCCcCCccCHhHccCCcccceeEecCCcCcEeChhHhccCCCcCEEECCCCcCCcCCHH
Confidence 88877777778888888888888888866666677888888888888888766666777788888888888888766666
Q ss_pred CCcccCCCCcccccCCcCCCCCC
Q 005038 628 WKAQFATFNESSYEGNTFLCGLP 650 (717)
Q Consensus 628 ~~~~~~~l~~~~~~~n~~~c~~~ 650 (717)
.+..+..++.+.+.+||+.|+|+
T Consensus 200 ~~~~l~~L~~L~l~~N~~~c~c~ 222 (270)
T 2o6q_A 200 AFDSLEKLKMLQLQENPWDCTCN 222 (270)
T ss_dssp TTTTCTTCCEEECCSSCBCCSSS
T ss_pred HhccccCCCEEEecCCCeeCCCc
Confidence 66677777888888888888765
No 78
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.90 E-value=1.8e-22 Score=201.65 Aligned_cols=206 Identities=25% Similarity=0.202 Sum_probs=172.8
Q ss_pred cccCCCCCCEEEccCCcCcCcCCcccCCCCCCCEEEccCCcccCCcccccCCCCCCCEEEccCCcCcccCCCcccccccc
Q 005038 311 SLSKCSSLEGLYLNNNSLLGKIPRWLGNLTRLQYIIMPNNHLEGPIPVEFCQLDSLQILDISDNNISGSLPSCFHPLSIK 390 (717)
Q Consensus 311 ~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~L~ 390 (717)
.+.+++++++++++++.++ .+|..+. ++++.|++++|.+++..+..|..+++|++|++++|.+++..
T Consensus 5 ~~~~l~~l~~l~~~~~~l~-~ip~~~~--~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~---------- 71 (290)
T 1p9a_G 5 EVSKVASHLEVNCDKRNLT-ALPPDLP--KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQ---------- 71 (290)
T ss_dssp EEECSTTCCEEECTTSCCS-SCCSCCC--TTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCEEE----------
T ss_pred cccccCCccEEECCCCCCC-cCCCCCC--CCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCCccCccc----------
Confidence 3667888999999999887 4565553 68899999999998888888889999999999988876321
Q ss_pred EEeccCcccccccCccccCCCCcCCEEeCCCCcCCcccchhhhCCCCCcEEEcCCCccccccchhccCCCCCCEEEccCC
Q 005038 391 QVHLSKNMLHGQLKRGTFFNCSSLVTLDLSYNRLNGSIPDWVDGLSQLSHLILGHNNLEGEVSVQLCELNQLQLLDLSNN 470 (717)
Q Consensus 391 ~L~l~~n~~~~~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n 470 (717)
. ...+++|++|++++|++. .+|..+..+++|++|++++|++++..+..|..+++|++|++++|
T Consensus 72 --------------~--~~~l~~L~~L~Ls~N~l~-~l~~~~~~l~~L~~L~l~~N~l~~l~~~~~~~l~~L~~L~L~~N 134 (290)
T 1p9a_G 72 --------------V--DGTLPVLGTLDLSHNQLQ-SLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGN 134 (290)
T ss_dssp --------------C--CSCCTTCCEEECCSSCCS-SCCCCTTTCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTS
T ss_pred --------------C--CCCCCcCCEEECCCCcCC-cCchhhccCCCCCEEECCCCcCcccCHHHHcCCCCCCEEECCCC
Confidence 1 246788999999999998 56777888999999999999999888888999999999999999
Q ss_pred cCccCCCcccccccccccccCCCCCCcchhhhhhcccccccccccccceEEEeeccceeeeccccccccceeeCCCCccC
Q 005038 471 NLHGPIPPCFDNTTLHESYSNSSSPDEQFEIFFSIEGHQGFLEKQNHEIFEFTTKNIAYIYQGKVLSLLSGLDLSCNKLI 550 (717)
Q Consensus 471 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~ 550 (717)
++++..+..|..+ ++|+.|+|++|+++
T Consensus 135 ~l~~~~~~~~~~l-----------------------------------------------------~~L~~L~L~~N~l~ 161 (290)
T 1p9a_G 135 ELKTLPPGLLTPT-----------------------------------------------------PKLEKLSLANNNLT 161 (290)
T ss_dssp CCCCCCTTTTTTC-----------------------------------------------------TTCCEEECTTSCCS
T ss_pred CCCccChhhcccc-----------------------------------------------------cCCCEEECCCCcCC
Confidence 9987776665543 37999999999999
Q ss_pred CCCcccccCCccCCeEeCCCcccCCCCCcCCCCCCCCCEEECCCCcCCcc
Q 005038 551 GHIPPQIGNLTRIQTLNLSHNNLTGSIPSTFSNLKHVESLDLSNNKLNGK 600 (717)
Q Consensus 551 ~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~N~i~~~ 600 (717)
+..+..|..+++|+.|+|++|+++ .+|..+..+++|+.|+|++|++.+.
T Consensus 162 ~l~~~~~~~l~~L~~L~L~~N~l~-~ip~~~~~~~~L~~l~L~~Np~~C~ 210 (290)
T 1p9a_G 162 ELPAGLLNGLENLDTLLLQENSLY-TIPKGFFGSHLLPFAFLHGNPWLCN 210 (290)
T ss_dssp CCCTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCCCSEEECCSCCBCCS
T ss_pred ccCHHHhcCcCCCCEEECCCCcCC-ccChhhcccccCCeEEeCCCCccCc
Confidence 777777889999999999999999 6777888888999999999998754
No 79
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.90 E-value=7.2e-23 Score=203.13 Aligned_cols=224 Identities=23% Similarity=0.268 Sum_probs=178.4
Q ss_pred EEEccCCcCcCcCCcccCCCCCCCEEEccCCcccCCcccccCCCCCCCEEEccCCcCcccCCCccccccccEEeccCccc
Q 005038 320 GLYLNNNSLLGKIPRWLGNLTRLQYIIMPNNHLEGPIPVEFCQLDSLQILDISDNNISGSLPSCFHPLSIKQVHLSKNML 399 (717)
Q Consensus 320 ~L~L~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~L~~L~l~~n~~ 399 (717)
.+++.++.+.+. .....+++|+.|++++|.+... ..+..+++|++|++++|.+.+
T Consensus 23 ~l~l~~~~~~~~--~~~~~l~~L~~L~l~~~~i~~~--~~l~~l~~L~~L~l~~n~l~~--------------------- 77 (272)
T 3rfs_A 23 KANLKKKSVTDA--VTQNELNSIDQIIANNSDIKSV--QGIQYLPNVRYLALGGNKLHD--------------------- 77 (272)
T ss_dssp HHHHTCSCTTSE--ECHHHHTTCCEEECTTSCCCCC--TTGGGCTTCCEEECTTSCCCC---------------------
T ss_pred HHHhcCcccccc--cccccccceeeeeeCCCCcccc--cccccCCCCcEEECCCCCCCC---------------------
Confidence 344444444322 2234567777778777777632 346667777777777776652
Q ss_pred ccccCccccCCCCcCCEEeCCCCcCCcccchhhhCCCCCcEEEcCCCccccccchhccCCCCCCEEEccCCcCccCCCcc
Q 005038 400 HGQLKRGTFFNCSSLVTLDLSYNRLNGSIPDWVDGLSQLSHLILGHNNLEGEVSVQLCELNQLQLLDLSNNNLHGPIPPC 479 (717)
Q Consensus 400 ~~~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~ 479 (717)
++ .+..+++|++|++++|.+++..+..+..+++|++|++++|++++..+..+..+++|++|++++|.+++..+..
T Consensus 78 ---~~--~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~ 152 (272)
T 3rfs_A 78 ---IS--ALKELTNLTYLILTGNQLQSLPNGVFDKLTNLKELVLVENQLQSLPDGVFDKLTNLTYLNLAHNQLQSLPKGV 152 (272)
T ss_dssp ---CG--GGTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTT
T ss_pred ---ch--hhcCCCCCCEEECCCCccCccChhHhcCCcCCCEEECCCCcCCccCHHHhccCCCCCEEECCCCccCccCHHH
Confidence 11 3778889999999999999887778889999999999999999888888899999999999999998776665
Q ss_pred cccccccccccCCCCCCcchhhhhhcccccccccccccceEEEeeccceeeeccccccccceeeCCCCccCCCCcccccC
Q 005038 480 FDNTTLHESYSNSSSPDEQFEIFFSIEGHQGFLEKQNHEIFEFTTKNIAYIYQGKVLSLLSGLDLSCNKLIGHIPPQIGN 559 (717)
Q Consensus 480 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~ 559 (717)
+..+ ++|+.|++++|++++..+..+..
T Consensus 153 ~~~l-----------------------------------------------------~~L~~L~l~~n~l~~~~~~~~~~ 179 (272)
T 3rfs_A 153 FDKL-----------------------------------------------------TNLTELDLSYNQLQSLPEGVFDK 179 (272)
T ss_dssp TTTC-----------------------------------------------------TTCCEEECCSSCCCCCCTTTTTT
T ss_pred hccC-----------------------------------------------------ccCCEEECCCCCcCccCHHHhcC
Confidence 5443 37999999999999888878899
Q ss_pred CccCCeEeCCCcccCCCCCcCCCCCCCCCEEECCCCcCCccCchhhcCCCCCCEEeccCCcCeecCCCCCcccC
Q 005038 560 LTRIQTLNLSHNNLTGSIPSTFSNLKHVESLDLSNNKLNGKIPHQLVELKTLEVFSVAYNNLSGEIPEWKAQFA 633 (717)
Q Consensus 560 l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~N~i~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~~~ 633 (717)
+++|++|++++|++++..|..+..+++|++|++++|++.+. +++|+.++++.|.++|.+|.+++.+.
T Consensus 180 l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~-------~~~l~~l~~~~n~~~g~ip~~~~~~~ 246 (272)
T 3rfs_A 180 LTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWDCT-------CPGIRYLSEWINKHSGVVRNSAGSVA 246 (272)
T ss_dssp CTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCC-------TTTTHHHHHHHHHTGGGBBCTTSCBC
T ss_pred CccCCEEECCCCcCCccCHHHHhCCcCCCEEEccCCCcccc-------CcHHHHHHHHHHhCCCcccCcccccC
Confidence 99999999999999988888899999999999999999854 45788999999999999999765543
No 80
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.88 E-value=3.4e-22 Score=198.24 Aligned_cols=86 Identities=26% Similarity=0.365 Sum_probs=36.2
Q ss_pred cCCCCCCeEECcCCcCcccCcccccCCCCCCEEEccCCcCcCcCCcccCCCCCCCEEEccCCcccCCcccccCCCCCCCE
Q 005038 289 FNLTNLQWLQLEGNRFVGEIPQSLSKCSSLEGLYLNNNSLLGKIPRWLGNLTRLQYIIMPNNHLEGPIPVEFCQLDSLQI 368 (717)
Q Consensus 289 ~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~ 368 (717)
..+++|++|++++|.+.+. ..+..+++|++|++++|.+.+..+..|..+++|+.|++++|.+++..+..+..+++|++
T Consensus 60 ~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~ 137 (272)
T 3rfs_A 60 QYLPNVRYLALGGNKLHDI--SALKELTNLTYLILTGNQLQSLPNGVFDKLTNLKELVLVENQLQSLPDGVFDKLTNLTY 137 (272)
T ss_dssp GGCTTCCEEECTTSCCCCC--GGGTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCE
T ss_pred ccCCCCcEEECCCCCCCCc--hhhcCCCCCCEEECCCCccCccChhHhcCCcCCCEEECCCCcCCccCHHHhccCCCCCE
Confidence 3344444444444444321 13344444444444444444333333444444444444444444333333444444444
Q ss_pred EEccCCcC
Q 005038 369 LDISDNNI 376 (717)
Q Consensus 369 L~l~~n~~ 376 (717)
|++++|.+
T Consensus 138 L~L~~n~l 145 (272)
T 3rfs_A 138 LNLAHNQL 145 (272)
T ss_dssp EECCSSCC
T ss_pred EECCCCcc
Confidence 44444443
No 81
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.88 E-value=7.7e-22 Score=193.22 Aligned_cols=181 Identities=25% Similarity=0.276 Sum_probs=149.0
Q ss_pred ccEEeccCcccccccCccccCCCCcCCEEeCCCCcCCcccchhhhCCCCCcEEEcCCCccccccchhccCCCCCCEEEcc
Q 005038 389 IKQVHLSKNMLHGQLKRGTFFNCSSLVTLDLSYNRLNGSIPDWVDGLSQLSHLILGHNNLEGEVSVQLCELNQLQLLDLS 468 (717)
Q Consensus 389 L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~ 468 (717)
.+.++++++.+. .++.. + .+++++|++++|.+.+..+..+.++++|++|++++|++++..+..+..+++|++|+++
T Consensus 16 ~~~l~~~~~~l~-~~p~~-~--~~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~ 91 (251)
T 3m19_A 16 KKEVDCQGKSLD-SVPSG-I--PADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLA 91 (251)
T ss_dssp GTEEECTTCCCS-SCCSC-C--CTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECT
T ss_pred CeEEecCCCCcc-ccCCC-C--CCCCCEEEccCCCcCccCHhHhcCcccCCEEECCCCcCCccCHhHhccCCcCCEEECC
Confidence 344444444442 33433 2 2578899999999988888888889999999999999998888888899999999999
Q ss_pred CCcCccCCCcccccccccccccCCCCCCcchhhhhhcccccccccccccceEEEeeccceeeeccccccccceeeCCCCc
Q 005038 469 NNNLHGPIPPCFDNTTLHESYSNSSSPDEQFEIFFSIEGHQGFLEKQNHEIFEFTTKNIAYIYQGKVLSLLSGLDLSCNK 548 (717)
Q Consensus 469 ~n~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~ 548 (717)
+|++++..+..|..+ ++|++|+|++|+
T Consensus 92 ~n~l~~~~~~~~~~l-----------------------------------------------------~~L~~L~L~~N~ 118 (251)
T 3m19_A 92 NNQLASLPLGVFDHL-----------------------------------------------------TQLDKLYLGGNQ 118 (251)
T ss_dssp TSCCCCCCTTTTTTC-----------------------------------------------------TTCCEEECCSSC
T ss_pred CCcccccChhHhccc-----------------------------------------------------CCCCEEEcCCCc
Confidence 999887766655543 379999999999
Q ss_pred cCCCCcccccCCccCCeEeCCCcccCCCCCcCCCCCCCCCEEECCCCcCCccCchhhcCCCCCCEEeccCCcCeecCC
Q 005038 549 LIGHIPPQIGNLTRIQTLNLSHNNLTGSIPSTFSNLKHVESLDLSNNKLNGKIPHQLVELKTLEVFSVAYNNLSGEIP 626 (717)
Q Consensus 549 l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~N~i~~~~p~~~~~l~~L~~L~l~~N~l~~~~p 626 (717)
+++..+..|..+++|++|+|++|++++..+..|..+++|++|+|++|++++..+..+..+++|+.|++++|++.+...
T Consensus 119 l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~~~ 196 (251)
T 3m19_A 119 LKSLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLSTNQLQSVPHGAFDRLGKLQTITLFGNQFDCSRC 196 (251)
T ss_dssp CCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCCBCTTST
T ss_pred CCCcChhHhccCCcccEEECcCCcCCccCHHHcCcCcCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCceeCCcc
Confidence 997777778999999999999999997777789999999999999999998878889999999999999999998733
No 82
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.87 E-value=4.2e-21 Score=187.99 Aligned_cols=181 Identities=23% Similarity=0.292 Sum_probs=163.4
Q ss_pred CcCCEEeCCCCcCCcccchhhhCCCCCcEEEcCCCccccccchhccCCCCCCEEEccCCcCccCCCcccccccccccccC
Q 005038 412 SSLVTLDLSYNRLNGSIPDWVDGLSQLSHLILGHNNLEGEVSVQLCELNQLQLLDLSNNNLHGPIPPCFDNTTLHESYSN 491 (717)
Q Consensus 412 ~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~ 491 (717)
...++++++++.++ .+|..+. +.++.|++++|.+++..+..+..+++|++|++++|.+++..+..|..+.
T Consensus 14 ~~~~~l~~~~~~l~-~~p~~~~--~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~------- 83 (251)
T 3m19_A 14 EGKKEVDCQGKSLD-SVPSGIP--ADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLT------- 83 (251)
T ss_dssp GGGTEEECTTCCCS-SCCSCCC--TTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCT-------
T ss_pred CCCeEEecCCCCcc-ccCCCCC--CCCCEEEccCCCcCccCHhHhcCcccCCEEECCCCcCCccCHhHhccCC-------
Confidence 45789999999998 4555444 6899999999999998888999999999999999999987776665543
Q ss_pred CCCCCcchhhhhhcccccccccccccceEEEeeccceeeeccccccccceeeCCCCccCCCCcccccCCccCCeEeCCCc
Q 005038 492 SSSPDEQFEIFFSIEGHQGFLEKQNHEIFEFTTKNIAYIYQGKVLSLLSGLDLSCNKLIGHIPPQIGNLTRIQTLNLSHN 571 (717)
Q Consensus 492 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n 571 (717)
.|+.|++++|++++..+..|..+++|++|+|++|
T Consensus 84 ----------------------------------------------~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N 117 (251)
T 3m19_A 84 ----------------------------------------------ELGTLGLANNQLASLPLGVFDHLTQLDKLYLGGN 117 (251)
T ss_dssp ----------------------------------------------TCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred ----------------------------------------------cCCEEECCCCcccccChhHhcccCCCCEEEcCCC
Confidence 7999999999999888888999999999999999
Q ss_pred ccCCCCCcCCCCCCCCCEEECCCCcCCccCchhhcCCCCCCEEeccCCcCeecCCCCCcccCCCCcccccCCcCCCC
Q 005038 572 NLTGSIPSTFSNLKHVESLDLSNNKLNGKIPHQLVELKTLEVFSVAYNNLSGEIPEWKAQFATFNESSYEGNTFLCG 648 (717)
Q Consensus 572 ~l~~~~p~~~~~l~~L~~L~L~~N~i~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~~~~l~~~~~~~n~~~c~ 648 (717)
++++..+..|..+++|++|+|++|++++..+..+..+++|++|++++|++++..|..+..+..++.+.+.+|++.|.
T Consensus 118 ~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~ 194 (251)
T 3m19_A 118 QLKSLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLSTNQLQSVPHGAFDRLGKLQTITLFGNQFDCS 194 (251)
T ss_dssp CCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCCBCTT
T ss_pred cCCCcChhHhccCCcccEEECcCCcCCccCHHHcCcCcCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCceeCC
Confidence 99988777899999999999999999977777899999999999999999988887888899999999999999998
No 83
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.86 E-value=7.4e-23 Score=212.19 Aligned_cols=262 Identities=20% Similarity=0.180 Sum_probs=148.9
Q ss_pred EEccCcccCccCcccccCCCCCCeEECcCCcCcccCc----ccccCCC-CCCEEEccCCcCcCcCCcccCCC-----CCC
Q 005038 273 LALSNNNLQGHLFSRNFNLTNLQWLQLEGNRFVGEIP----QSLSKCS-SLEGLYLNNNSLLGKIPRWLGNL-----TRL 342 (717)
Q Consensus 273 L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~----~~~~~l~-~L~~L~L~~n~~~~~~~~~~~~l-----~~L 342 (717)
+++++|.+++.++..+...++|++|++++|.+.+..+ ..+..++ +|++|++++|.+.+..+..+..+ ++|
T Consensus 3 ~~ls~n~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L 82 (362)
T 3goz_A 3 YKLTLHPGSNPVEEFTSIPHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPANV 82 (362)
T ss_dssp EECCCCTTCCHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTC
T ss_pred cccccccchHHHHHHHhCCCCceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCCCc
Confidence 5666777766665555555557777777777665554 5566666 67777777776665555444443 666
Q ss_pred CEEEccCCcccCCccccc----CCC-CCCCEEEccCCcCcccCCCccccccccEEeccCcccccccCccccCC-CCcCCE
Q 005038 343 QYIIMPNNHLEGPIPVEF----CQL-DSLQILDISDNNISGSLPSCFHPLSIKQVHLSKNMLHGQLKRGTFFN-CSSLVT 416 (717)
Q Consensus 343 ~~L~l~~n~~~~~~~~~~----~~l-~~L~~L~l~~n~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~-~~~L~~ 416 (717)
+.|++++|.+++..+..+ ..+ ++|++|++++|.+.+..+.. + ...+.. .++|++
T Consensus 83 ~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~-------------------l-~~~l~~~~~~L~~ 142 (362)
T 3goz_A 83 TSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSE-------------------F-KQAFSNLPASITS 142 (362)
T ss_dssp CEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHH-------------------H-HHHHTTSCTTCCE
T ss_pred cEEECcCCcCChHHHHHHHHHHHhCCCCccEEECcCCcCCcHHHHH-------------------H-HHHHHhCCCceeE
Confidence 666666666665444432 222 56666666666554321110 0 011333 357888
Q ss_pred EeCCCCcCCccc----chhhhCCC-CCcEEEcCCCccccccchhc----cCC-CCCCEEEccCCcCccCCCccccccccc
Q 005038 417 LDLSYNRLNGSI----PDWVDGLS-QLSHLILGHNNLEGEVSVQL----CEL-NQLQLLDLSNNNLHGPIPPCFDNTTLH 486 (717)
Q Consensus 417 L~L~~n~~~~~~----~~~~~~l~-~L~~L~L~~n~l~~~~~~~l----~~l-~~L~~L~L~~n~l~~~~~~~~~~~~~~ 486 (717)
|++++|.+.+.. +..+..++ +|++|++++|++++..+..+ ..+ ++|+.|++++|.+++.....+...-
T Consensus 143 L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~i~~~~~~~l~~~l-- 220 (362)
T 3goz_A 143 LNLRGNDLGIKSSDELIQILAAIPANVNSLNLRGNNLASKNCAELAKFLASIPASVTSLDLSANLLGLKSYAELAYIF-- 220 (362)
T ss_dssp EECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHH--
T ss_pred EEccCCcCCHHHHHHHHHHHhcCCccccEeeecCCCCchhhHHHHHHHHHhCCCCCCEEECCCCCCChhHHHHHHHHH--
Confidence 888888777433 23344444 78888888887776555433 334 4777777777776542211110000
Q ss_pred ccccCCCCCCcchhhhhhcccccccccccccceEEEeeccceeeeccccccccceeeCCCCccCCCCc----ccccCCcc
Q 005038 487 ESYSNSSSPDEQFEIFFSIEGHQGFLEKQNHEIFEFTTKNIAYIYQGKVLSLLSGLDLSCNKLIGHIP----PQIGNLTR 562 (717)
Q Consensus 487 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~----~~l~~l~~ 562 (717)
....++|+.|+|++|.+.+..+ ..+..+++
T Consensus 221 ----------------------------------------------~~~~~~L~~L~Ls~N~l~~~~~~~l~~~~~~l~~ 254 (362)
T 3goz_A 221 ----------------------------------------------SSIPNHVVSLNLCLNCLHGPSLENLKLLKDSLKH 254 (362)
T ss_dssp ----------------------------------------------HHSCTTCCEEECCSSCCCCCCHHHHHHTTTTTTT
T ss_pred ----------------------------------------------hcCCCCceEEECcCCCCCcHHHHHHHHHHhcCCC
Confidence 0001257777777777765444 22455667
Q ss_pred CCeEeCCCcccCCCC-------CcCCCCCCCCCEEECCCCcCCccCc
Q 005038 563 IQTLNLSHNNLTGSI-------PSTFSNLKHVESLDLSNNKLNGKIP 602 (717)
Q Consensus 563 L~~L~Ls~n~l~~~~-------p~~~~~l~~L~~L~L~~N~i~~~~p 602 (717)
|++|+|++|.+.++. +..+..+++|+.||+++|++....+
T Consensus 255 L~~L~L~~n~l~~i~~~~~~~l~~~~~~l~~L~~LdL~~N~l~~~~~ 301 (362)
T 3goz_A 255 LQTVYLDYDIVKNMSKEQCKALGAAFPNIQKIILVDKNGKEIHPSHS 301 (362)
T ss_dssp CSEEEEEHHHHTTCCHHHHHHHHTTSTTCCEEEEECTTSCBCCGGGC
T ss_pred ccEEEeccCCccccCHHHHHHHHHHhccCCceEEEecCCCcCCCcch
Confidence 777777777644322 2345566667777777777665443
No 84
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.86 E-value=6.7e-23 Score=212.51 Aligned_cols=129 Identities=20% Similarity=0.161 Sum_probs=61.6
Q ss_pred EEccCCccccccchhhhhCCCCCCEEEccCcccCccCc----ccccCCC-CCCeEECcCCcCcccCcccccCC-----CC
Q 005038 248 LDLSNNHLTGEIPEHLAVGCVNLQFLALSNNNLQGHLF----SRNFNLT-NLQWLQLEGNRFVGEIPQSLSKC-----SS 317 (717)
Q Consensus 248 L~Ls~n~l~~~~~~~~~~~~~~L~~L~L~~n~i~~~~~----~~~~~l~-~L~~L~L~~n~l~~~~~~~~~~l-----~~ 317 (717)
++++.|.+++.+|... ...++|++|++++|.+++..+ ..+..++ +|++|+|++|.+.+..+..+..+ ++
T Consensus 3 ~~ls~n~~~~~~~~~~-~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~ 81 (362)
T 3goz_A 3 YKLTLHPGSNPVEEFT-SIPHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPAN 81 (362)
T ss_dssp EECCCCTTCCHHHHHH-TSCTTCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTT
T ss_pred cccccccchHHHHHHH-hCCCCceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCCC
Confidence 3455555554333332 223345555555555554443 4444455 55555555555554444444332 55
Q ss_pred CCEEEccCCcCcCcCCcc----cCCC-CCCCEEEccCCcccCCccccc----CC-CCCCCEEEccCCcCc
Q 005038 318 LEGLYLNNNSLLGKIPRW----LGNL-TRLQYIIMPNNHLEGPIPVEF----CQ-LDSLQILDISDNNIS 377 (717)
Q Consensus 318 L~~L~L~~n~~~~~~~~~----~~~l-~~L~~L~l~~n~~~~~~~~~~----~~-l~~L~~L~l~~n~~~ 377 (717)
|++|++++|.+.+..+.. +..+ ++|+.|++++|.+++..+..+ .. .++|++|++++|.+.
T Consensus 82 L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~ 151 (362)
T 3goz_A 82 VTSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGNDLG 151 (362)
T ss_dssp CCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCEEECTTSCGG
T ss_pred ccEEECcCCcCChHHHHHHHHHHHhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCceeEEEccCCcCC
Confidence 555555555555433332 2222 455555555555554433322 22 235555555555544
No 85
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.86 E-value=4e-21 Score=186.78 Aligned_cols=196 Identities=21% Similarity=0.202 Sum_probs=121.0
Q ss_pred CCCEEEccCCccccccchhhhhCCCCCCEEEccCcc-cCccCcccccCCCCCCeEECcC-CcCcccCcccccCCCCCCEE
Q 005038 244 FLQILDLSNNHLTGEIPEHLAVGCVNLQFLALSNNN-LQGHLFSRNFNLTNLQWLQLEG-NRFVGEIPQSLSKCSSLEGL 321 (717)
Q Consensus 244 ~L~~L~Ls~n~l~~~~~~~~~~~~~~L~~L~L~~n~-i~~~~~~~~~~l~~L~~L~L~~-n~l~~~~~~~~~~l~~L~~L 321 (717)
+|++|++++|.++ .++...+.++++|++|++++|. ++...+..|.++++|++|++++ |.+....+..|..+++|++|
T Consensus 32 ~l~~L~l~~n~l~-~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~~~~f~~l~~L~~L 110 (239)
T 2xwt_C 32 STQTLKLIETHLR-TIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPLLKFL 110 (239)
T ss_dssp TCCEEEEESCCCS-EECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEECTTSEECCTTCCEE
T ss_pred cccEEEEeCCcce-EECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEcCHHHhCCCCCCCEE
Confidence 5666666666665 4444444456666666666664 5555555566666666666666 66665555566666666666
Q ss_pred EccCCcCcCcCCcccCCCCCCC---EEEccCC-cccCCcccccCCCCCCC-EEEccCCcCcccCCCccccccccEEeccC
Q 005038 322 YLNNNSLLGKIPRWLGNLTRLQ---YIIMPNN-HLEGPIPVEFCQLDSLQ-ILDISDNNISGSLPSCFHPLSIKQVHLSK 396 (717)
Q Consensus 322 ~L~~n~~~~~~~~~~~~l~~L~---~L~l~~n-~~~~~~~~~~~~l~~L~-~L~l~~n~~~~~~~~~~~~~~L~~L~l~~ 396 (717)
++++|.+.+ +|. |..+++|+ .|++++| .+++..+..|..+++|+ +|++++|++..
T Consensus 111 ~l~~n~l~~-lp~-~~~l~~L~~L~~L~l~~N~~l~~i~~~~~~~l~~L~~~L~l~~n~l~~------------------ 170 (239)
T 2xwt_C 111 GIFNTGLKM-FPD-LTKVYSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNGFTS------------------ 170 (239)
T ss_dssp EEEEECCCS-CCC-CTTCCBCCSEEEEEEESCTTCCEECTTTTTTTBSSEEEEECCSCCCCE------------------
T ss_pred eCCCCCCcc-ccc-cccccccccccEEECCCCcchhhcCcccccchhcceeEEEcCCCCCcc------------------
Confidence 666666654 444 55666666 6777776 66655555566677777 77777666652
Q ss_pred cccccccCccccCCCCcCCEEeCCCCc-CCcccchhhhCC-CCCcEEEcCCCccccccchhccCCCCCCEEEccCC
Q 005038 397 NMLHGQLKRGTFFNCSSLVTLDLSYNR-LNGSIPDWVDGL-SQLSHLILGHNNLEGEVSVQLCELNQLQLLDLSNN 470 (717)
Q Consensus 397 n~~~~~~~~~~~~~~~~L~~L~L~~n~-~~~~~~~~~~~l-~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n 470 (717)
++...|.. ++|++|++++|+ +++..+..|.++ ++|+.|++++|++++..+. .+++|+.|+++++
T Consensus 171 ------i~~~~~~~-~~L~~L~L~~n~~l~~i~~~~~~~l~~~L~~L~l~~N~l~~l~~~---~~~~L~~L~l~~~ 236 (239)
T 2xwt_C 171 ------VQGYAFNG-TKLDAVYLNKNKYLTVIDKDAFGGVYSGPSLLDVSQTSVTALPSK---GLEHLKELIARNT 236 (239)
T ss_dssp ------ECTTTTTT-CEEEEEECTTCTTCCEECTTTTTTCSBCCSEEECTTCCCCCCCCT---TCTTCSEEECTTC
T ss_pred ------cCHhhcCC-CCCCEEEcCCCCCcccCCHHHhhccccCCcEEECCCCccccCChh---HhccCceeeccCc
Confidence 22233444 567777777774 665555666666 7777777777777644333 4567777777665
No 86
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.86 E-value=3e-21 Score=187.68 Aligned_cols=78 Identities=19% Similarity=0.234 Sum_probs=37.6
Q ss_pred ccc-eeeCCCCccCCCCcccccCCccCCeEeCCCcc-cCCCCCcCCCCC-CCCCEEECCCCcCCccCchhhcCCCCCCEE
Q 005038 538 LLS-GLDLSCNKLIGHIPPQIGNLTRIQTLNLSHNN-LTGSIPSTFSNL-KHVESLDLSNNKLNGKIPHQLVELKTLEVF 614 (717)
Q Consensus 538 ~L~-~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~-l~~~~p~~~~~l-~~L~~L~L~~N~i~~~~p~~~~~l~~L~~L 614 (717)
.|+ .|++++|+++...+..+.. ++|++|++++|+ ++++.+..|.++ ++|++|++++|++++ +|.. .+++|+.|
T Consensus 156 ~L~~~L~l~~n~l~~i~~~~~~~-~~L~~L~L~~n~~l~~i~~~~~~~l~~~L~~L~l~~N~l~~-l~~~--~~~~L~~L 231 (239)
T 2xwt_C 156 NETLTLKLYNNGFTSVQGYAFNG-TKLDAVYLNKNKYLTVIDKDAFGGVYSGPSLLDVSQTSVTA-LPSK--GLEHLKEL 231 (239)
T ss_dssp SSEEEEECCSCCCCEECTTTTTT-CEEEEEECTTCTTCCEECTTTTTTCSBCCSEEECTTCCCCC-CCCT--TCTTCSEE
T ss_pred cceeEEEcCCCCCcccCHhhcCC-CCCCEEEcCCCCCcccCCHHHhhccccCCcEEECCCCcccc-CChh--HhccCcee
Confidence 344 4444444444222222333 455555555553 554444555555 555555555555553 2222 34455555
Q ss_pred eccCC
Q 005038 615 SVAYN 619 (717)
Q Consensus 615 ~l~~N 619 (717)
+++++
T Consensus 232 ~l~~~ 236 (239)
T 2xwt_C 232 IARNT 236 (239)
T ss_dssp ECTTC
T ss_pred eccCc
Confidence 55544
No 87
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.86 E-value=6.4e-22 Score=200.46 Aligned_cols=209 Identities=22% Similarity=0.260 Sum_probs=122.3
Q ss_pred CCCCEEEccCCcccCCccccc--CCCCCCCEEEccCCcCcccCCCccccccccEEeccCcccccccCccccCCCCcCCEE
Q 005038 340 TRLQYIIMPNNHLEGPIPVEF--CQLDSLQILDISDNNISGSLPSCFHPLSIKQVHLSKNMLHGQLKRGTFFNCSSLVTL 417 (717)
Q Consensus 340 ~~L~~L~l~~n~~~~~~~~~~--~~l~~L~~L~l~~n~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L 417 (717)
++|++|++++|.+.+..|..+ ..+++|++|++++|.+.+..+. ++...+..+++|++|
T Consensus 91 ~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~--------------------~~~~~~~~~~~L~~L 150 (310)
T 4glp_A 91 SRLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSW--------------------LAELQQWLKPGLKVL 150 (310)
T ss_dssp SCCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSS--------------------HHHHHTTBCSCCCEE
T ss_pred CceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhh--------------------hHHHHhhhccCCCEE
Confidence 345555555555555555444 5555555555555555432111 001113345666677
Q ss_pred eCCCCcCCcccchhhhCCCCCcEEEcCCCccccc---c-chhccCCCCCCEEEccCCcCccCCCcccccccccccccCCC
Q 005038 418 DLSYNRLNGSIPDWVDGLSQLSHLILGHNNLEGE---V-SVQLCELNQLQLLDLSNNNLHGPIPPCFDNTTLHESYSNSS 493 (717)
Q Consensus 418 ~L~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~---~-~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~~~ 493 (717)
++++|.+.+..+..+..+++|++|++++|++.+. . +..+..+++|++|++++|+++...+... ..
T Consensus 151 ~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~-~l---------- 219 (310)
T 4glp_A 151 SIAQAHSPAFSCEQVRAFPALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGMETPTGVCA-AL---------- 219 (310)
T ss_dssp EEECCSSCCCCTTSCCCCTTCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCCCHHHHHH-HH----------
T ss_pred EeeCCCcchhhHHHhccCCCCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCCchHHHHH-HH----------
Confidence 7777766666666666667777777777765432 1 1223456677777777776642111000 00
Q ss_pred CCCcchhhhhhcccccccccccccceEEEeeccceeeeccccccccceeeCCCCccCCCCcccccCC---ccCCeEeCCC
Q 005038 494 SPDEQFEIFFSIEGHQGFLEKQNHEIFEFTTKNIAYIYQGKVLSLLSGLDLSCNKLIGHIPPQIGNL---TRIQTLNLSH 570 (717)
Q Consensus 494 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l---~~L~~L~Ls~ 570 (717)
...+++|++|+|++|++.+..|..+..+ ++|++|+|++
T Consensus 220 ---------------------------------------~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~L~~L~Ls~ 260 (310)
T 4glp_A 220 ---------------------------------------AAAGVQPHSLDLSHNSLRATVNPSAPRCMWSSALNSLNLSF 260 (310)
T ss_dssp ---------------------------------------HHHTCCCSSEECTTSCCCCCCCSCCSSCCCCTTCCCEECCS
T ss_pred ---------------------------------------HhcCCCCCEEECCCCCCCccchhhHHhccCcCcCCEEECCC
Confidence 0112367777777777776666666555 5788888888
Q ss_pred cccCCCCCcCCCCCCCCCEEECCCCcCCccCchhhcCCCCCCEEeccCCcCee
Q 005038 571 NNLTGSIPSTFSNLKHVESLDLSNNKLNGKIPHQLVELKTLEVFSVAYNNLSG 623 (717)
Q Consensus 571 n~l~~~~p~~~~~l~~L~~L~L~~N~i~~~~p~~~~~l~~L~~L~l~~N~l~~ 623 (717)
|+++ .+|..+. ++|++|+|++|++++. |. +..+++|+.|++++|+++.
T Consensus 261 N~l~-~lp~~~~--~~L~~L~Ls~N~l~~~-~~-~~~l~~L~~L~L~~N~l~~ 308 (310)
T 4glp_A 261 AGLE-QVPKGLP--AKLRVLDLSSNRLNRA-PQ-PDELPEVDNLTLDGNPFLV 308 (310)
T ss_dssp SCCC-SCCSCCC--SCCSCEECCSCCCCSC-CC-TTSCCCCSCEECSSTTTSC
T ss_pred CCCC-chhhhhc--CCCCEEECCCCcCCCC-ch-hhhCCCccEEECcCCCCCC
Confidence 8877 5565553 6788888888888743 33 5677778888888887763
No 88
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.85 E-value=3.8e-22 Score=205.24 Aligned_cols=252 Identities=18% Similarity=0.190 Sum_probs=149.8
Q ss_pred CCeEECcCCcCcccCcccccCC--CCCCEEEccCCcCcCcCCcccCCCCCCCEEEccCCcccCC-cccccCCCCCCCEEE
Q 005038 294 LQWLQLEGNRFVGEIPQSLSKC--SSLEGLYLNNNSLLGKIPRWLGNLTRLQYIIMPNNHLEGP-IPVEFCQLDSLQILD 370 (717)
Q Consensus 294 L~~L~L~~n~l~~~~~~~~~~l--~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~-~~~~~~~l~~L~~L~ 370 (717)
++.++++++.+. +..+..+ ++++.|++++|.+.+..+. +..+++|+.|++++|.+.+. .+..+..+++|++|+
T Consensus 49 ~~~l~l~~~~~~---~~~~~~~~~~~l~~L~l~~n~l~~~~~~-~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~L~~L~ 124 (336)
T 2ast_B 49 WQTLDLTGKNLH---PDVTGRLLSQGVIAFRCPRSFMDQPLAE-HFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLS 124 (336)
T ss_dssp SSEEECTTCBCC---HHHHHHHHHTTCSEEECTTCEECSCCCS-CCCCBCCCEEECTTCEECHHHHHHHHTTBCCCSEEE
T ss_pred heeeccccccCC---HHHHHhhhhccceEEEcCCccccccchh-hccCCCCCEEEccCCCcCHHHHHHHHhhCCCCCEEe
Confidence 445555555443 2233333 4555566655555544333 33456666666666665533 445555666666666
Q ss_pred ccCCcCcccCCCccccccccEEeccCcccccccCccccCCCCcCCEEeCCCC-cCCc-ccchhhhCCCCCcEEEcCCC-c
Q 005038 371 ISDNNISGSLPSCFHPLSIKQVHLSKNMLHGQLKRGTFFNCSSLVTLDLSYN-RLNG-SIPDWVDGLSQLSHLILGHN-N 447 (717)
Q Consensus 371 l~~n~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~L~~n-~~~~-~~~~~~~~l~~L~~L~L~~n-~ 447 (717)
+++|.+.+. .+. .+..+++|++|++++| .+++ .++..+..+++|++|++++| .
T Consensus 125 L~~~~l~~~-----------------------~~~-~l~~~~~L~~L~L~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~ 180 (336)
T 2ast_B 125 LEGLRLSDP-----------------------IVN-TLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFD 180 (336)
T ss_dssp CTTCBCCHH-----------------------HHH-HHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEEECCCCTT
T ss_pred CcCcccCHH-----------------------HHH-HHhcCCCCCEEECCCCCCCCHHHHHHHHhcCCCCCEEcCCCCCC
Confidence 666654421 111 1445666777777766 4553 24455666777777777777 6
Q ss_pred cccc-cchhccCCC-CCCEEEccCCc--Cc-cCCCcccccccccccccCCCCCCcchhhhhhcccccccccccccceEEE
Q 005038 448 LEGE-VSVQLCELN-QLQLLDLSNNN--LH-GPIPPCFDNTTLHESYSNSSSPDEQFEIFFSIEGHQGFLEKQNHEIFEF 522 (717)
Q Consensus 448 l~~~-~~~~l~~l~-~L~~L~L~~n~--l~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 522 (717)
+++. .+..+..++ +|++|++++|. ++ +.++..+.
T Consensus 181 l~~~~~~~~~~~l~~~L~~L~l~~~~~~~~~~~l~~~~~----------------------------------------- 219 (336)
T 2ast_B 181 FTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVR----------------------------------------- 219 (336)
T ss_dssp CCHHHHHHHHHHSCTTCCEEECCSCGGGSCHHHHHHHHH-----------------------------------------
T ss_pred cChHHHHHHHHhcccCCCEEEeCCCcccCCHHHHHHHHh-----------------------------------------
Confidence 6643 355566677 77777777773 32 11111111
Q ss_pred eeccceeeeccccccccceeeCCCCc-cCCCCcccccCCccCCeEeCCCcc-cCCCCCcCCCCCCCCCEEECCCCcCCcc
Q 005038 523 TTKNIAYIYQGKVLSLLSGLDLSCNK-LIGHIPPQIGNLTRIQTLNLSHNN-LTGSIPSTFSNLKHVESLDLSNNKLNGK 600 (717)
Q Consensus 523 ~~~~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~l~~l~~L~~L~Ls~n~-l~~~~p~~~~~l~~L~~L~L~~N~i~~~ 600 (717)
.+++|+.|++++|. +++..+..+..+++|++|++++|. +.......+..+++|++|++++| +...
T Consensus 220 ------------~~~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~-i~~~ 286 (336)
T 2ast_B 220 ------------RCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLLELGEIPTLKTLQVFGI-VPDG 286 (336)
T ss_dssp ------------HCTTCSEEECTTCTTCCGGGGGGGGGCTTCCEEECTTCTTCCGGGGGGGGGCTTCCEEECTTS-SCTT
T ss_pred ------------hCCCCCEEeCCCCCcCCHHHHHHHhCCCCCCEeeCCCCCCCCHHHHHHHhcCCCCCEEeccCc-cCHH
Confidence 13467778888877 555666778888899999999885 32222225778899999999998 4432
Q ss_pred CchhhcCC-CCCCEEeccCCcCeecCCCCCc
Q 005038 601 IPHQLVEL-KTLEVFSVAYNNLSGEIPEWKA 630 (717)
Q Consensus 601 ~p~~~~~l-~~L~~L~l~~N~l~~~~p~~~~ 630 (717)
.+..+ .+++.|++++|.+++..|.+.+
T Consensus 287 ---~~~~l~~~l~~L~l~~n~l~~~~~~~~~ 314 (336)
T 2ast_B 287 ---TLQLLKEALPHLQINCSHFTTIARPTIG 314 (336)
T ss_dssp ---CHHHHHHHSTTSEESCCCSCCTTCSSCS
T ss_pred ---HHHHHHhhCcceEEecccCccccCCccc
Confidence 23333 2366667899999988887654
No 89
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.85 E-value=6e-23 Score=215.24 Aligned_cols=88 Identities=18% Similarity=0.232 Sum_probs=59.8
Q ss_pred ccceeeCCCCccC----CCCcccccCCccCCeEeCCCcccCCC----CCcCC--CCCCCCCEEECCCCcCCc----cCch
Q 005038 538 LLSGLDLSCNKLI----GHIPPQIGNLTRIQTLNLSHNNLTGS----IPSTF--SNLKHVESLDLSNNKLNG----KIPH 603 (717)
Q Consensus 538 ~L~~L~L~~n~l~----~~~~~~l~~l~~L~~L~Ls~n~l~~~----~p~~~--~~l~~L~~L~L~~N~i~~----~~p~ 603 (717)
+|+.|+|++|.++ ..+|..+..+++|++|+|++|.+++. +|..+ +.+++|++|+|++|++++ .+|.
T Consensus 217 ~L~~L~Ls~n~l~~~g~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~~L~~L~L~~n~i~~~g~~~l~~ 296 (386)
T 2ca6_A 217 ELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKT 296 (386)
T ss_dssp TCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEECTTCCCCHHHHHHHHHHHHTCSSCCCCEEECCSSCCBHHHHHHHHH
T ss_pred CccEEECcCCCCCcHHHHHHHHHHccCCCcCEEECCCCCCchhhHHHHHHHHhhccCCCeEEEECcCCcCCHHHHHHHHH
Confidence 5666666666653 34556677777777777777777654 34455 337778888888888775 3666
Q ss_pred hh-cCCCCCCEEeccCCcCeecC
Q 005038 604 QL-VELKTLEVFSVAYNNLSGEI 625 (717)
Q Consensus 604 ~~-~~l~~L~~L~l~~N~l~~~~ 625 (717)
.+ ..+++|++|++++|++++..
T Consensus 297 ~l~~~l~~L~~L~l~~N~l~~~~ 319 (386)
T 2ca6_A 297 VIDEKMPDLLFLELNGNRFSEED 319 (386)
T ss_dssp HHHHHCTTCCEEECTTSBSCTTS
T ss_pred HHHhcCCCceEEEccCCcCCcch
Confidence 66 55778888888888877654
No 90
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.85 E-value=1.1e-21 Score=201.61 Aligned_cols=200 Identities=21% Similarity=0.234 Sum_probs=116.5
Q ss_pred CCCEEEccCCccccccchhhhhCC--CCCCEEEccCcccCccCcccccCCCCCCeEECcCCcCccc-CcccccCCCCCCE
Q 005038 244 FLQILDLSNNHLTGEIPEHLAVGC--VNLQFLALSNNNLQGHLFSRNFNLTNLQWLQLEGNRFVGE-IPQSLSKCSSLEG 320 (717)
Q Consensus 244 ~L~~L~Ls~n~l~~~~~~~~~~~~--~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~-~~~~~~~l~~L~~ 320 (717)
.++.++++++.+.+ ..+. .+ ++++.|++++|.+.+..+. +..+++|++|++++|.+.+. .+..+..+++|++
T Consensus 48 ~~~~l~l~~~~~~~---~~~~-~~~~~~l~~L~l~~n~l~~~~~~-~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~L~~ 122 (336)
T 2ast_B 48 LWQTLDLTGKNLHP---DVTG-RLLSQGVIAFRCPRSFMDQPLAE-HFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQN 122 (336)
T ss_dssp TSSEEECTTCBCCH---HHHH-HHHHTTCSEEECTTCEECSCCCS-CCCCBCCCEEECTTCEECHHHHHHHHTTBCCCSE
T ss_pred hheeeccccccCCH---HHHH-hhhhccceEEEcCCccccccchh-hccCCCCCEEEccCCCcCHHHHHHHHhhCCCCCE
Confidence 36677777776652 2222 23 6777777777777655444 44567777777777776644 5556667777777
Q ss_pred EEccCCcCcCcCCcccCCCCCCCEEEccCC-cccCC-cccccCCCCCCCEEEccCC-cCcccCCCccccccccEEeccCc
Q 005038 321 LYLNNNSLLGKIPRWLGNLTRLQYIIMPNN-HLEGP-IPVEFCQLDSLQILDISDN-NISGSLPSCFHPLSIKQVHLSKN 397 (717)
Q Consensus 321 L~L~~n~~~~~~~~~~~~l~~L~~L~l~~n-~~~~~-~~~~~~~l~~L~~L~l~~n-~~~~~~~~~~~~~~L~~L~l~~n 397 (717)
|++++|.+.+..+..+..+++|+.|++++| .+++. .+..+..+++|++|++++| .+++.
T Consensus 123 L~L~~~~l~~~~~~~l~~~~~L~~L~L~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l~~~------------------ 184 (336)
T 2ast_B 123 LSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEK------------------ 184 (336)
T ss_dssp EECTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHH------------------
T ss_pred EeCcCcccCHHHHHHHhcCCCCCEEECCCCCCCCHHHHHHHHhcCCCCCEEcCCCCCCcChH------------------
Confidence 777777666555666666667777777666 44431 3444555666666666666 44321
Q ss_pred ccccccCccccCCCC-cCCEEeCCCC--cCC-cccchhhhCCCCCcEEEcCCCc-cccccchhccCCCCCCEEEccCCc
Q 005038 398 MLHGQLKRGTFFNCS-SLVTLDLSYN--RLN-GSIPDWVDGLSQLSHLILGHNN-LEGEVSVQLCELNQLQLLDLSNNN 471 (717)
Q Consensus 398 ~~~~~~~~~~~~~~~-~L~~L~L~~n--~~~-~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~l~~l~~L~~L~L~~n~ 471 (717)
.++ ..+..++ +|++|++++| .++ +.++..+..+++|+.|++++|. +++..+..+..+++|+.|++++|.
T Consensus 185 ----~~~-~~~~~l~~~L~~L~l~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~ 258 (336)
T 2ast_B 185 ----HVQ-VAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCY 258 (336)
T ss_dssp ----HHH-HHHHHSCTTCCEEECCSCGGGSCHHHHHHHHHHCTTCSEEECTTCTTCCGGGGGGGGGCTTCCEEECTTCT
T ss_pred ----HHH-HHHHhcccCCCEEEeCCCcccCCHHHHHHHHhhCCCCCEEeCCCCCcCCHHHHHHHhCCCCCCEeeCCCCC
Confidence 011 1134455 6666666666 333 2334445556666666666666 444445555556666666666653
No 91
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.84 E-value=8.7e-21 Score=192.12 Aligned_cols=226 Identities=19% Similarity=0.177 Sum_probs=151.5
Q ss_pred CCCEEEccCCCCcccCChhh--hhCCCCCCEEEccCCcCcccCccCc--CCCCCcCEEEccCCcCCccCC----cccccc
Q 005038 146 DLEYVDLSHIKMNGEFPNWL--LENNTKLETLFLVNDSLAGPFRLPI--HSHKRLRQLDVSNNNIRGHIP----VKIGDV 217 (717)
Q Consensus 146 ~L~~L~l~~~~~~~~~~~~~--~~~~~~L~~L~l~~n~~~~~~~~~~--~~~~~L~~L~ls~n~i~~~~~----~~~~~~ 217 (717)
.++.+.+.++.+.......+ ...+++|++|++++|.+.+..+..+ ..+++|++|++++|.+++..+ ..+. .
T Consensus 65 ~l~~l~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~-~ 143 (310)
T 4glp_A 65 RVRRLTVGAAQVPAQLLVGALRVLAYSRLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQW-L 143 (310)
T ss_dssp CCCEEEECSCCCBHHHHHHHHHHHHHSCCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTT-B
T ss_pred ceeEEEEeCCcCCHHHHHHHHHhcccCceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHhh-h
Confidence 46777777766643211111 1234668888888888888777777 788888888888888875444 1122 4
Q ss_pred CCCCcEEECCCCCCCccCCccccCCCCCCEEEccCCccccc--cc-hhhhhCCCCCCEEEccCcccCccCc--c-cccCC
Q 005038 218 LPSLYVFNNSMNALDGSIPSSFGNMKFLQILDLSNNHLTGE--IP-EHLAVGCVNLQFLALSNNNLQGHLF--S-RNFNL 291 (717)
Q Consensus 218 l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~--~~-~~~~~~~~~L~~L~L~~n~i~~~~~--~-~~~~l 291 (717)
+++|++|++++|.+.+..+..+..+++|++|++++|++.+. ++ ......+++|++|++++|.++.... . .+..+
T Consensus 144 ~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~l~~~l 223 (310)
T 4glp_A 144 KPGLKVLSIAQAHSPAFSCEQVRAFPALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGMETPTGVCAALAAAG 223 (310)
T ss_dssp CSCCCEEEEECCSSCCCCTTSCCCCTTCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCCCHHHHHHHHHHHT
T ss_pred ccCCCEEEeeCCCcchhhHHHhccCCCCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCCchHHHHHHHHhcC
Confidence 67888888888888777777788888888888888876532 21 1222356777788888777753211 1 23566
Q ss_pred CCCCeEECcCCcCcccCcccccCC---CCCCEEEccCCcCcCcCCcccCCCCCCCEEEccCCcccCCcccccCCCCCCCE
Q 005038 292 TNLQWLQLEGNRFVGEIPQSLSKC---SSLEGLYLNNNSLLGKIPRWLGNLTRLQYIIMPNNHLEGPIPVEFCQLDSLQI 368 (717)
Q Consensus 292 ~~L~~L~L~~n~l~~~~~~~~~~l---~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~ 368 (717)
++|++|++++|++.+..|..+..+ ++|++|++++|.++ .+|..+. ++|+.|++++|++++. |. +..+++|+.
T Consensus 224 ~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~L~~L~Ls~N~l~-~lp~~~~--~~L~~L~Ls~N~l~~~-~~-~~~l~~L~~ 298 (310)
T 4glp_A 224 VQPHSLDLSHNSLRATVNPSAPRCMWSSALNSLNLSFAGLE-QVPKGLP--AKLRVLDLSSNRLNRA-PQ-PDELPEVDN 298 (310)
T ss_dssp CCCSSEECTTSCCCCCCCSCCSSCCCCTTCCCEECCSSCCC-SCCSCCC--SCCSCEECCSCCCCSC-CC-TTSCCCCSC
T ss_pred CCCCEEECCCCCCCccchhhHHhccCcCcCCEEECCCCCCC-chhhhhc--CCCCEEECCCCcCCCC-ch-hhhCCCccE
Confidence 777777777777776666555555 57777777777777 4555553 6777777777777754 22 556677777
Q ss_pred EEccCCcCc
Q 005038 369 LDISDNNIS 377 (717)
Q Consensus 369 L~l~~n~~~ 377 (717)
|++++|+++
T Consensus 299 L~L~~N~l~ 307 (310)
T 4glp_A 299 LTLDGNPFL 307 (310)
T ss_dssp EECSSTTTS
T ss_pred EECcCCCCC
Confidence 777777765
No 92
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.84 E-value=4.4e-22 Score=208.60 Aligned_cols=65 Identities=18% Similarity=0.202 Sum_probs=40.6
Q ss_pred ccceeeCCCCccCCC----Ccccc--cCCccCCeEeCCCcccCC----CCCcCC-CCCCCCCEEECCCCcCCccCc
Q 005038 538 LLSGLDLSCNKLIGH----IPPQI--GNLTRIQTLNLSHNNLTG----SIPSTF-SNLKHVESLDLSNNKLNGKIP 602 (717)
Q Consensus 538 ~L~~L~L~~n~l~~~----~~~~l--~~l~~L~~L~Ls~n~l~~----~~p~~~-~~l~~L~~L~L~~N~i~~~~p 602 (717)
+|+.|+|++|.+++. ++..+ +.+++|++|+|++|.+++ .+|..+ .++++|++|++++|++++..+
T Consensus 245 ~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~~L~~L~L~~n~i~~~g~~~l~~~l~~~l~~L~~L~l~~N~l~~~~~ 320 (386)
T 2ca6_A 245 NLRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRFSEEDD 320 (386)
T ss_dssp TCCEEECTTCCCCHHHHHHHHHHHHTCSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEEECTTSBSCTTSH
T ss_pred CcCEEECCCCCCchhhHHHHHHHHhhccCCCeEEEECcCCcCCHHHHHHHHHHHHhcCCCceEEEccCCcCCcchh
Confidence 344444444444332 33444 236778888888888775 356555 557888888888888876653
No 93
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.84 E-value=4.7e-20 Score=186.12 Aligned_cols=194 Identities=22% Similarity=0.335 Sum_probs=146.5
Q ss_pred CCCCCCCEEEccCCcccCCcccccCCCCCCCEEEccCCcCcccCCCccccccccEEeccCcccccccCccccCCCCcCCE
Q 005038 337 GNLTRLQYIIMPNNHLEGPIPVEFCQLDSLQILDISDNNISGSLPSCFHPLSIKQVHLSKNMLHGQLKRGTFFNCSSLVT 416 (717)
Q Consensus 337 ~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~ 416 (717)
..+++|+.|++++|.+... + .+..+++|++|++++|.+.+. +. +..+++|++
T Consensus 38 ~~l~~L~~L~l~~~~i~~l-~-~~~~l~~L~~L~L~~n~i~~~------------------------~~--~~~l~~L~~ 89 (308)
T 1h6u_A 38 ADLDGITTLSAFGTGVTTI-E-GVQYLNNLIGLELKDNQITDL------------------------AP--LKNLTKITE 89 (308)
T ss_dssp HHHHTCCEEECTTSCCCCC-T-TGGGCTTCCEEECCSSCCCCC------------------------GG--GTTCCSCCE
T ss_pred HHcCCcCEEEeeCCCccCc-h-hhhccCCCCEEEccCCcCCCC------------------------hh--HccCCCCCE
Confidence 3456777788877777643 3 466677777777777766532 22 667788888
Q ss_pred EeCCCCcCCcccchhhhCCCCCcEEEcCCCccccccchhccCCCCCCEEEccCCcCccCCCcccccccccccccCCCCCC
Q 005038 417 LDLSYNRLNGSIPDWVDGLSQLSHLILGHNNLEGEVSVQLCELNQLQLLDLSNNNLHGPIPPCFDNTTLHESYSNSSSPD 496 (717)
Q Consensus 417 L~L~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~~~~~~ 496 (717)
|++++|.+.+. ..+..+++|++|++++|++++.. .+..+++|+.|++++|.+++..+ +..
T Consensus 90 L~L~~n~l~~~--~~~~~l~~L~~L~l~~n~l~~~~--~l~~l~~L~~L~l~~n~l~~~~~--l~~-------------- 149 (308)
T 1h6u_A 90 LELSGNPLKNV--SAIAGLQSIKTLDLTSTQITDVT--PLAGLSNLQVLYLDLNQITNISP--LAG-------------- 149 (308)
T ss_dssp EECCSCCCSCC--GGGTTCTTCCEEECTTSCCCCCG--GGTTCTTCCEEECCSSCCCCCGG--GGG--------------
T ss_pred EEccCCcCCCc--hhhcCCCCCCEEECCCCCCCCch--hhcCCCCCCEEECCCCccCcCcc--ccC--------------
Confidence 88888888753 35778888888888888888643 37888888888888888865432 222
Q ss_pred cchhhhhhcccccccccccccceEEEeeccceeeeccccccccceeeCCCCccCCCCcccccCCccCCeEeCCCcccCCC
Q 005038 497 EQFEIFFSIEGHQGFLEKQNHEIFEFTTKNIAYIYQGKVLSLLSGLDLSCNKLIGHIPPQIGNLTRIQTLNLSHNNLTGS 576 (717)
Q Consensus 497 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~ 576 (717)
++.|+.|++++|++++..+ +..+++|++|++++|++++.
T Consensus 150 ---------------------------------------l~~L~~L~l~~n~l~~~~~--l~~l~~L~~L~l~~n~l~~~ 188 (308)
T 1h6u_A 150 ---------------------------------------LTNLQYLSIGNAQVSDLTP--LANLSKLTTLKADDNKISDI 188 (308)
T ss_dssp ---------------------------------------CTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCCC
T ss_pred ---------------------------------------CCCccEEEccCCcCCCChh--hcCCCCCCEEECCCCccCcC
Confidence 3478889999998885433 88889999999999999865
Q ss_pred CCcCCCCCCCCCEEECCCCcCCccCchhhcCCCCCCEEeccCCcCee
Q 005038 577 IPSTFSNLKHVESLDLSNNKLNGKIPHQLVELKTLEVFSVAYNNLSG 623 (717)
Q Consensus 577 ~p~~~~~l~~L~~L~L~~N~i~~~~p~~~~~l~~L~~L~l~~N~l~~ 623 (717)
.+ +..+++|++|++++|++++..| +..+++|+.|++++|++++
T Consensus 189 ~~--l~~l~~L~~L~L~~N~l~~~~~--l~~l~~L~~L~l~~N~i~~ 231 (308)
T 1h6u_A 189 SP--LASLPNLIEVHLKNNQISDVSP--LANTSNLFIVTLTNQTITN 231 (308)
T ss_dssp GG--GGGCTTCCEEECTTSCCCBCGG--GTTCTTCCEEEEEEEEEEC
T ss_pred hh--hcCCCCCCEEEccCCccCcccc--ccCCCCCCEEEccCCeeec
Confidence 43 7888999999999999985443 7889999999999999875
No 94
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.83 E-value=3e-20 Score=187.49 Aligned_cols=148 Identities=25% Similarity=0.405 Sum_probs=71.9
Q ss_pred CCCCCCeEECcCCcCcccCcccccCCCCCCEEEccCCcCcCcCCcccCCCCCCCEEEccCCcccCCcccccCCCCCCCEE
Q 005038 290 NLTNLQWLQLEGNRFVGEIPQSLSKCSSLEGLYLNNNSLLGKIPRWLGNLTRLQYIIMPNNHLEGPIPVEFCQLDSLQIL 369 (717)
Q Consensus 290 ~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L 369 (717)
.+++|++|++++|.+.. ++ .+..+++|++|++++|.+.+..+ +..+++|+.|++++|.+++. ..+..+++|++|
T Consensus 39 ~l~~L~~L~l~~~~i~~-l~-~~~~l~~L~~L~L~~n~i~~~~~--~~~l~~L~~L~L~~n~l~~~--~~~~~l~~L~~L 112 (308)
T 1h6u_A 39 DLDGITTLSAFGTGVTT-IE-GVQYLNNLIGLELKDNQITDLAP--LKNLTKITELELSGNPLKNV--SAIAGLQSIKTL 112 (308)
T ss_dssp HHHTCCEEECTTSCCCC-CT-TGGGCTTCCEEECCSSCCCCCGG--GTTCCSCCEEECCSCCCSCC--GGGTTCTTCCEE
T ss_pred HcCCcCEEEeeCCCccC-ch-hhhccCCCCEEEccCCcCCCChh--HccCCCCCEEEccCCcCCCc--hhhcCCCCCCEE
Confidence 45556666666665553 22 35555555555555555543222 45555555555555555432 234444445555
Q ss_pred EccCCcCcccCCCccccccccEEeccCcccccccCccccCCCCcCCEEeCCCCcCCcccchhhhCCCCCcEEEcCCCccc
Q 005038 370 DISDNNISGSLPSCFHPLSIKQVHLSKNMLHGQLKRGTFFNCSSLVTLDLSYNRLNGSIPDWVDGLSQLSHLILGHNNLE 449 (717)
Q Consensus 370 ~l~~n~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~ 449 (717)
++++|.+.+ ++ .+..+++|++|++++|.+++..+ +..+++|+.|++++|+++
T Consensus 113 ~l~~n~l~~------------------------~~--~l~~l~~L~~L~l~~n~l~~~~~--l~~l~~L~~L~l~~n~l~ 164 (308)
T 1h6u_A 113 DLTSTQITD------------------------VT--PLAGLSNLQVLYLDLNQITNISP--LAGLTNLQYLSIGNAQVS 164 (308)
T ss_dssp ECTTSCCCC------------------------CG--GGTTCTTCCEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCC
T ss_pred ECCCCCCCC------------------------ch--hhcCCCCCCEEECCCCccCcCcc--ccCCCCccEEEccCCcCC
Confidence 554444431 11 14444555555555555553322 445555555555555554
Q ss_pred cccchhccCCCCCCEEEccCCcCc
Q 005038 450 GEVSVQLCELNQLQLLDLSNNNLH 473 (717)
Q Consensus 450 ~~~~~~l~~l~~L~~L~L~~n~l~ 473 (717)
+..+ +..+++|+.|++++|.++
T Consensus 165 ~~~~--l~~l~~L~~L~l~~n~l~ 186 (308)
T 1h6u_A 165 DLTP--LANLSKLTTLKADDNKIS 186 (308)
T ss_dssp CCGG--GTTCTTCCEEECCSSCCC
T ss_pred CChh--hcCCCCCCEEECCCCccC
Confidence 3222 444444555554444443
No 95
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.83 E-value=1.4e-20 Score=179.69 Aligned_cols=196 Identities=20% Similarity=0.269 Sum_probs=156.1
Q ss_pred CEEeCCCCcCCcccchhhhCCCCCcEEEcCCCccccccchhccCCCCCCEEEccCCcCccCCCcccccccccccccCCCC
Q 005038 415 VTLDLSYNRLNGSIPDWVDGLSQLSHLILGHNNLEGEVSVQLCELNQLQLLDLSNNNLHGPIPPCFDNTTLHESYSNSSS 494 (717)
Q Consensus 415 ~~L~L~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~~~~ 494 (717)
+.++++++.++. +|..+. ++++.|++++|++++..+..|..+++|+.|++++|++++..|..|..+.
T Consensus 14 ~~v~c~~~~l~~-iP~~l~--~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~---------- 80 (220)
T 2v9t_B 14 NIVDCRGKGLTE-IPTNLP--ETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLR---------- 80 (220)
T ss_dssp TEEECTTSCCSS-CCSSCC--TTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCS----------
T ss_pred CEEEcCCCCcCc-CCCccC--cCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCc----------
Confidence 679999999884 455443 7899999999999988888899999999999999999988787776644
Q ss_pred CCcchhhhhhcccccccccccccceEEEeeccceeeeccccccccceeeCCCCccCCCCcccccCCccCCeEeCCCcccC
Q 005038 495 PDEQFEIFFSIEGHQGFLEKQNHEIFEFTTKNIAYIYQGKVLSLLSGLDLSCNKLIGHIPPQIGNLTRIQTLNLSHNNLT 574 (717)
Q Consensus 495 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~ 574 (717)
+|++|+|++|++++..+..|.++++|++|+|++|+++
T Consensus 81 -------------------------------------------~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N~l~ 117 (220)
T 2v9t_B 81 -------------------------------------------SLNSLVLYGNKITELPKSLFEGLFSLQLLLLNANKIN 117 (220)
T ss_dssp -------------------------------------------SCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC
T ss_pred -------------------------------------------CCCEEECCCCcCCccCHhHccCCCCCCEEECCCCCCC
Confidence 7999999999999777777899999999999999999
Q ss_pred CCCCcCCCCCCCCCEEECCCCcCCccCchhhcCCCCCCEEeccCCcCeecCCCCCcccCCCCcccccCCcCCCCCCCCCC
Q 005038 575 GSIPSTFSNLKHVESLDLSNNKLNGKIPHQLVELKTLEVFSVAYNNLSGEIPEWKAQFATFNESSYEGNTFLCGLPLPIC 654 (717)
Q Consensus 575 ~~~p~~~~~l~~L~~L~L~~N~i~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~~~~l~~~~~~~n~~~c~~~l~~C 654 (717)
+..|..|..+++|++|+|++|++++..+..|..+++|+.|++++|++.+..+ +..+..+ +..++..- ....|
T Consensus 118 ~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~c~c~-----l~~l~~~-l~~~~~~~--~~~~C 189 (220)
T 2v9t_B 118 CLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLRAIQTMHLAQNPFICDCH-----LKWLADY-LHTNPIET--SGARC 189 (220)
T ss_dssp CCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCEECSGG-----GHHHHHH-HHHCCCBC--SCCBE
T ss_pred EeCHHHcCCCCCCCEEECCCCcCCEECHHHHhCCCCCCEEEeCCCCcCCCCc-----cHHHHHH-HHhCCCCc--cCCCc
Confidence 8889999999999999999999998888889999999999999999987543 1111111 11122111 11248
Q ss_pred CCCCCCCCCCCCCCCCCccc
Q 005038 655 RSPATMPEASIGNEQDDNLI 674 (717)
Q Consensus 655 ~~~~~~~~~~~~~~~~~~~~ 674 (717)
..|...+++.+.....+++.
T Consensus 190 ~~P~~l~g~~l~~l~~~~~~ 209 (220)
T 2v9t_B 190 TSPRRLANKRIGQIKSKKFR 209 (220)
T ss_dssp EESGGGTTCBGGGSCGGGCC
T ss_pred CCchHHcCCchhhCCHHHCc
Confidence 88888888777666655443
No 96
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.83 E-value=1.2e-19 Score=186.85 Aligned_cols=243 Identities=17% Similarity=0.152 Sum_probs=141.6
Q ss_pred CEEEccCCcCCccCCccccccCCCCcEEECCCCCCCccCCccccCCCCCCEEEccCCccccccchhhhhCCCCCCEEEcc
Q 005038 197 RQLDVSNNNIRGHIPVKIGDVLPSLYVFNNSMNALDGSIPSSFGNMKFLQILDLSNNHLTGEIPEHLAVGCVNLQFLALS 276 (717)
Q Consensus 197 ~~L~ls~n~i~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~L~~L~L~ 276 (717)
++++.++++++ .+|..+. +++++|++++|+++...+.+|.++++|++|+|++|.+.+.++...+.++++++++
T Consensus 12 ~~v~C~~~~Lt-~iP~~l~---~~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~--- 84 (350)
T 4ay9_X 12 RVFLCQESKVT-EIPSDLP---RNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEI--- 84 (350)
T ss_dssp TEEEEESTTCC-SCCTTCC---TTCSEEEEESCCCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEE---
T ss_pred CEEEecCCCCC-ccCcCcC---CCCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhh---
Confidence 45666666666 5554432 3455555555555543334455555555555555554434444444444443321
Q ss_pred CcccCccCcccccCCCCCCeEECcCCcCcccCcccccCCCCCCEEEccCCcCcCcCCcccCCCCCCCEEEccC-CcccCC
Q 005038 277 NNNLQGHLFSRNFNLTNLQWLQLEGNRFVGEIPQSLSKCSSLEGLYLNNNSLLGKIPRWLGNLTRLQYIIMPN-NHLEGP 355 (717)
Q Consensus 277 ~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~l~~-n~~~~~ 355 (717)
+.+++|++....|..|..+++|++|++++|.+....+..+....++..+++.+ +.+...
T Consensus 85 --------------------l~~~~N~l~~l~~~~f~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~l~l~~~~~i~~l 144 (350)
T 4ay9_X 85 --------------------RIEKANNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTI 144 (350)
T ss_dssp --------------------EEEEETTCCEECTTSBCCCTTCCEEEEEEECCSSCCCCTTCCBSSCEEEEEESCTTCCEE
T ss_pred --------------------hcccCCcccccCchhhhhccccccccccccccccCCchhhcccchhhhhhhccccccccc
Confidence 23333444444444455555555555555555433333344444455555543 344433
Q ss_pred cccccCCCC-CCCEEEccCCcCcccCCCccccccccEEeccCcccccccCccccCCCCcCCEEeCCCCcCCcccchhhhC
Q 005038 356 IPVEFCQLD-SLQILDISDNNISGSLPSCFHPLSIKQVHLSKNMLHGQLKRGTFFNCSSLVTLDLSYNRLNGSIPDWVDG 434 (717)
Q Consensus 356 ~~~~~~~l~-~L~~L~l~~n~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~~~~ 434 (717)
.+..|..+. .++.|++++|+++...+..+...+++++++.++...+.++..+|..+++|++|++++|+++...+..
T Consensus 145 ~~~~f~~~~~~l~~L~L~~N~i~~i~~~~f~~~~L~~l~l~~~n~l~~i~~~~f~~l~~L~~LdLs~N~l~~lp~~~--- 221 (350)
T 4ay9_X 145 ERNSFVGLSFESVILWLNKNGIQEIHNSAFNGTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTRIHSLPSYG--- 221 (350)
T ss_dssp CTTSSTTSBSSCEEEECCSSCCCEECTTSSTTEEEEEEECTTCTTCCCCCTTTTTTEECCSEEECTTSCCCCCCSSS---
T ss_pred cccchhhcchhhhhhccccccccCCChhhccccchhHHhhccCCcccCCCHHHhccCcccchhhcCCCCcCccChhh---
Confidence 344444443 4667777777777666666666777777777655556788878999999999999999999654444
Q ss_pred CCCCcEEEcCCCccccccchhccCCCCCCEEEccCC
Q 005038 435 LSQLSHLILGHNNLEGEVSVQLCELNQLQLLDLSNN 470 (717)
Q Consensus 435 l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n 470 (717)
+.+|+.|.+.++.-....| .+..+++|+.+++.++
T Consensus 222 ~~~L~~L~~l~~~~l~~lP-~l~~l~~L~~l~l~~~ 256 (350)
T 4ay9_X 222 LENLKKLRARSTYNLKKLP-TLEKLVALMEASLTYP 256 (350)
T ss_dssp CTTCCEEECTTCTTCCCCC-CTTTCCSCCEEECSCH
T ss_pred hccchHhhhccCCCcCcCC-CchhCcChhhCcCCCC
Confidence 4566667665554333455 4788999999999764
No 97
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.82 E-value=1.5e-19 Score=186.31 Aligned_cols=79 Identities=22% Similarity=0.194 Sum_probs=42.7
Q ss_pred ccceeeCCC-CccCCCCcccccCCccCCeEeCCCcccCCCCCcCCCCCCCCCEEECCCCcCCccCchhhcCCCCCCEEec
Q 005038 538 LLSGLDLSC-NKLIGHIPPQIGNLTRIQTLNLSHNNLTGSIPSTFSNLKHVESLDLSNNKLNGKIPHQLVELKTLEVFSV 616 (717)
Q Consensus 538 ~L~~L~L~~-n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~N~i~~~~p~~~~~l~~L~~L~l 616 (717)
.|+.|++++ |.++...+..|.++++|++|+|++|+++.+.+.. +.+|++|.+.++.-...+| .+..+++|+.+++
T Consensus 178 ~L~~l~l~~~n~l~~i~~~~f~~l~~L~~LdLs~N~l~~lp~~~---~~~L~~L~~l~~~~l~~lP-~l~~l~~L~~l~l 253 (350)
T 4ay9_X 178 QLDELNLSDNNNLEELPNDVFHGASGPVILDISRTRIHSLPSYG---LENLKKLRARSTYNLKKLP-TLEKLVALMEASL 253 (350)
T ss_dssp EEEEEECTTCTTCCCCCTTTTTTEECCSEEECTTSCCCCCCSSS---CTTCCEEECTTCTTCCCCC-CTTTCCSCCEEEC
T ss_pred chhHHhhccCCcccCCCHHHhccCcccchhhcCCCCcCccChhh---hccchHhhhccCCCcCcCC-CchhCcChhhCcC
Confidence 355566653 4444333345666666666666666666333323 3345555554444444555 3556666666666
Q ss_pred cCCc
Q 005038 617 AYNN 620 (717)
Q Consensus 617 ~~N~ 620 (717)
+++.
T Consensus 254 ~~~~ 257 (350)
T 4ay9_X 254 TYPS 257 (350)
T ss_dssp SCHH
T ss_pred CCCc
Confidence 5543
No 98
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.81 E-value=2.1e-19 Score=170.46 Aligned_cols=163 Identities=26% Similarity=0.290 Sum_probs=139.7
Q ss_pred CCcCCEEeCCCCcCCcccchhhhCCCCCcEEEcCCCccccccchhccCCCCCCEEEccCCcCccCCCccccccccccccc
Q 005038 411 CSSLVTLDLSYNRLNGSIPDWVDGLSQLSHLILGHNNLEGEVSVQLCELNQLQLLDLSNNNLHGPIPPCFDNTTLHESYS 490 (717)
Q Consensus 411 ~~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~ 490 (717)
.+++++|++++|.+++..+..+..+++|++|++++|++++..+..+..+++|++|++++|.+++..+..|..+
T Consensus 27 ~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l------- 99 (208)
T 2o6s_A 27 PAQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQLQSLPNGVFDKL------- 99 (208)
T ss_dssp CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTC-------
T ss_pred CCCCcEEEcCCCccCcCChhhhcccccCcEEECCCCccCccChhhcCCCCCcCEEECCCCcCCccCHhHhcCc-------
Confidence 3688999999999987777778889999999999999997777778899999999999999887666555443
Q ss_pred CCCCCCcchhhhhhcccccccccccccceEEEeeccceeeeccccccccceeeCCCCccCCCCcccccCCccCCeEeCCC
Q 005038 491 NSSSPDEQFEIFFSIEGHQGFLEKQNHEIFEFTTKNIAYIYQGKVLSLLSGLDLSCNKLIGHIPPQIGNLTRIQTLNLSH 570 (717)
Q Consensus 491 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~ 570 (717)
++|+.|++++|++++..+..+..+++|++|++++
T Consensus 100 ----------------------------------------------~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~ 133 (208)
T 2o6s_A 100 ----------------------------------------------TQLKELALNTNQLQSLPDGVFDKLTQLKDLRLYQ 133 (208)
T ss_dssp ----------------------------------------------TTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred ----------------------------------------------cCCCEEEcCCCcCcccCHhHhccCCcCCEEECCC
Confidence 3799999999999987777789999999999999
Q ss_pred cccCCCCCcCCCCCCCCCEEECCCCcCCccCchhhcCCCCCCEEeccCCcCeecCCCCCcccC
Q 005038 571 NNLTGSIPSTFSNLKHVESLDLSNNKLNGKIPHQLVELKTLEVFSVAYNNLSGEIPEWKAQFA 633 (717)
Q Consensus 571 n~l~~~~p~~~~~l~~L~~L~L~~N~i~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~~~ 633 (717)
|++++..+..|..+++|++|++++|++.+ .+++|+.|+++.|.++|.+|.+++.+.
T Consensus 134 N~l~~~~~~~~~~l~~L~~L~l~~N~~~~-------~~~~l~~L~~~~n~~~g~ip~~~~~l~ 189 (208)
T 2o6s_A 134 NQLKSVPDGVFDRLTSLQYIWLHDNPWDC-------TCPGIRYLSEWINKHSGVVRNSAGSVA 189 (208)
T ss_dssp SCCSCCCTTTTTTCTTCCEEECCSCCBCC-------CTTTTHHHHHHHHHCTTTBBCTTSSBC
T ss_pred CccceeCHHHhccCCCccEEEecCCCeec-------CCCCHHHHHHHHHhCCceeeccCcccc
Confidence 99998777779999999999999998874 456899999999999999998765543
No 99
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.81 E-value=6.8e-20 Score=174.92 Aligned_cols=157 Identities=23% Similarity=0.278 Sum_probs=139.9
Q ss_pred CCEEeCCCCcCCcccchhhhCCCCCcEEEcCCCccccccc-hhccCCCCCCEEEccCCcCccCCCcccccccccccccCC
Q 005038 414 LVTLDLSYNRLNGSIPDWVDGLSQLSHLILGHNNLEGEVS-VQLCELNQLQLLDLSNNNLHGPIPPCFDNTTLHESYSNS 492 (717)
Q Consensus 414 L~~L~L~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~-~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~~ 492 (717)
-+.+++++|.++. +|..+. +.+++|++++|++++..+ ..+..+++|+.|++++|.+++..+..|..+.
T Consensus 13 ~~~l~~s~n~l~~-iP~~~~--~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~-------- 81 (220)
T 2v70_A 13 GTTVDCSNQKLNK-IPEHIP--QYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGAS-------- 81 (220)
T ss_dssp TTEEECCSSCCSS-CCSCCC--TTCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCEECTTTTTTCT--------
T ss_pred CCEeEeCCCCccc-CccCCC--CCCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCEECHHHhCCCC--------
Confidence 3689999999985 565443 567999999999998754 5588999999999999999987776666544
Q ss_pred CCCCcchhhhhhcccccccccccccceEEEeeccceeeeccccccccceeeCCCCccCCCCcccccCCccCCeEeCCCcc
Q 005038 493 SSPDEQFEIFFSIEGHQGFLEKQNHEIFEFTTKNIAYIYQGKVLSLLSGLDLSCNKLIGHIPPQIGNLTRIQTLNLSHNN 572 (717)
Q Consensus 493 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~ 572 (717)
.|++|+|++|++++..+..|..+++|++|+|++|+
T Consensus 82 ---------------------------------------------~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~ 116 (220)
T 2v70_A 82 ---------------------------------------------GVNEILLTSNRLENVQHKMFKGLESLKTLMLRSNR 116 (220)
T ss_dssp ---------------------------------------------TCCEEECCSSCCCCCCGGGGTTCSSCCEEECTTSC
T ss_pred ---------------------------------------------CCCEEECCCCccCccCHhHhcCCcCCCEEECCCCc
Confidence 79999999999998888889999999999999999
Q ss_pred cCCCCCcCCCCCCCCCEEECCCCcCCccCchhhcCCCCCCEEeccCCcCeecCC
Q 005038 573 LTGSIPSTFSNLKHVESLDLSNNKLNGKIPHQLVELKTLEVFSVAYNNLSGEIP 626 (717)
Q Consensus 573 l~~~~p~~~~~l~~L~~L~L~~N~i~~~~p~~~~~l~~L~~L~l~~N~l~~~~p 626 (717)
+++..|..|.++++|++|+|++|++++..|..|..+++|+.|++++|++.+.++
T Consensus 117 l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c~c~ 170 (220)
T 2v70_A 117 ITCVGNDSFIGLSSVRLLSLYDNQITTVAPGAFDTLHSLSTLNLLANPFNCNCY 170 (220)
T ss_dssp CCCBCTTSSTTCTTCSEEECTTSCCCCBCTTTTTTCTTCCEEECCSCCEECSGG
T ss_pred CCeECHhHcCCCccCCEEECCCCcCCEECHHHhcCCCCCCEEEecCcCCcCCCc
Confidence 999889999999999999999999998889999999999999999999998766
No 100
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.80 E-value=7.4e-19 Score=167.72 Aligned_cols=157 Identities=19% Similarity=0.199 Sum_probs=108.7
Q ss_pred ccEEeccCcccccccCccccCCCCcCCEEeCCCCcCCcccc-hhhhCCCCCcEEEcCCCccccccchhccCCCCCCEEEc
Q 005038 389 IKQVHLSKNMLHGQLKRGTFFNCSSLVTLDLSYNRLNGSIP-DWVDGLSQLSHLILGHNNLEGEVSVQLCELNQLQLLDL 467 (717)
Q Consensus 389 L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~L~~n~~~~~~~-~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L 467 (717)
-+.+++++|.+. .++.. + .+.+++|++++|.+++..+ ..|..+++|+.|++++|++++..+..|..+++|++|++
T Consensus 13 ~~~l~~s~n~l~-~iP~~-~--~~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~L 88 (220)
T 2v70_A 13 GTTVDCSNQKLN-KIPEH-I--PQYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILL 88 (220)
T ss_dssp TTEEECCSSCCS-SCCSC-C--CTTCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCEECTTTTTTCTTCCEEEC
T ss_pred CCEeEeCCCCcc-cCccC-C--CCCCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCEECHHHhCCCCCCCEEEC
Confidence 346777777764 34443 2 2345777777777776533 44677777777777777777766667777777777777
Q ss_pred cCCcCccCCCcccccccccccccCCCCCCcchhhhhhcccccccccccccceEEEeeccceeeeccccccccceeeCCCC
Q 005038 468 SNNNLHGPIPPCFDNTTLHESYSNSSSPDEQFEIFFSIEGHQGFLEKQNHEIFEFTTKNIAYIYQGKVLSLLSGLDLSCN 547 (717)
Q Consensus 468 ~~n~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n 547 (717)
++|.+++..+..|..+. .|++|+|++|
T Consensus 89 s~N~l~~~~~~~~~~l~-----------------------------------------------------~L~~L~Ls~N 115 (220)
T 2v70_A 89 TSNRLENVQHKMFKGLE-----------------------------------------------------SLKTLMLRSN 115 (220)
T ss_dssp CSSCCCCCCGGGGTTCS-----------------------------------------------------SCCEEECTTS
T ss_pred CCCccCccCHhHhcCCc-----------------------------------------------------CCCEEECCCC
Confidence 77777766655554433 6777777777
Q ss_pred ccCCCCcccccCCccCCeEeCCCcccCCCCCcCCCCCCCCCEEECCCCcCCccCc
Q 005038 548 KLIGHIPPQIGNLTRIQTLNLSHNNLTGSIPSTFSNLKHVESLDLSNNKLNGKIP 602 (717)
Q Consensus 548 ~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~N~i~~~~p 602 (717)
++++..|..|..+++|++|+|++|++++..|..|..+++|++|+|++|++.+..+
T Consensus 116 ~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c~c~ 170 (220)
T 2v70_A 116 RITCVGNDSFIGLSSVRLLSLYDNQITTVAPGAFDTLHSLSTLNLLANPFNCNCY 170 (220)
T ss_dssp CCCCBCTTSSTTCTTCSEEECTTSCCCCBCTTTTTTCTTCCEEECCSCCEECSGG
T ss_pred cCCeECHhHcCCCccCCEEECCCCcCCEECHHHhcCCCCCCEEEecCcCCcCCCc
Confidence 7777777777777777777777777777767777777777777777777765443
No 101
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.80 E-value=1.4e-19 Score=187.20 Aligned_cols=179 Identities=27% Similarity=0.295 Sum_probs=126.9
Q ss_pred cEEeccCcccccccCccccCCCCcCCEEeCCCCcCCcccchhhh-CCCCCcEEEcCCCccccccchhccCCCCCCEEEcc
Q 005038 390 KQVHLSKNMLHGQLKRGTFFNCSSLVTLDLSYNRLNGSIPDWVD-GLSQLSHLILGHNNLEGEVSVQLCELNQLQLLDLS 468 (717)
Q Consensus 390 ~~L~l~~n~~~~~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~~~-~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~ 468 (717)
+.++++++.+. .+|.. + .+.++.|+|++|.+++..+..+. ++++|+.|+|++|++++..+..|..+++|+.|+|+
T Consensus 21 ~~l~c~~~~l~-~iP~~-~--~~~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls 96 (361)
T 2xot_A 21 NILSCSKQQLP-NVPQS-L--PSYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLS 96 (361)
T ss_dssp TEEECCSSCCS-SCCSS-C--CTTCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECC
T ss_pred CEEEeCCCCcC-ccCcc-C--CCCCCEEECCCCCCCccChhhhhhcccccCEEECCCCcCCccChhhccCCCCCCEEECC
Confidence 56777777764 34443 2 24577888888888776666676 77888888888888887777777788888888888
Q ss_pred CCcCccCCCcccccccccccccCCCCCCcchhhhhhcccccccccccccceEEEeeccceeeeccccccccceeeCCCCc
Q 005038 469 NNNLHGPIPPCFDNTTLHESYSNSSSPDEQFEIFFSIEGHQGFLEKQNHEIFEFTTKNIAYIYQGKVLSLLSGLDLSCNK 548 (717)
Q Consensus 469 ~n~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~ 548 (717)
+|++++..+..|..+. +|+.|+|++|+
T Consensus 97 ~N~l~~~~~~~~~~l~-----------------------------------------------------~L~~L~L~~N~ 123 (361)
T 2xot_A 97 SNHLHTLDEFLFSDLQ-----------------------------------------------------ALEVLLLYNNH 123 (361)
T ss_dssp SSCCCEECTTTTTTCT-----------------------------------------------------TCCEEECCSSC
T ss_pred CCcCCcCCHHHhCCCc-----------------------------------------------------CCCEEECCCCc
Confidence 8887766555554433 67778888888
Q ss_pred cCCCCcccccCCccCCeEeCCCcccCCCCCcCC---CCCCCCCEEECCCCcCCccCchhhcCCCC--CCEEeccCCcCee
Q 005038 549 LIGHIPPQIGNLTRIQTLNLSHNNLTGSIPSTF---SNLKHVESLDLSNNKLNGKIPHQLVELKT--LEVFSVAYNNLSG 623 (717)
Q Consensus 549 l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~---~~l~~L~~L~L~~N~i~~~~p~~~~~l~~--L~~L~l~~N~l~~ 623 (717)
+.+..|..|..+++|++|+|++|++++..+..| ..+++|+.|+|++|++++..+..+..++. ++.|++++|++.+
T Consensus 124 i~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~~~l~~l~l~~N~~~C 203 (361)
T 2xot_A 124 IVVVDRNAFEDMAQLQKLYLSQNQISRFPVELIKDGNKLPKLMLLDLSSNKLKKLPLTDLQKLPAWVKNGLYLHNNPLEC 203 (361)
T ss_dssp CCEECTTTTTTCTTCCEEECCSSCCCSCCGGGTC----CTTCCEEECCSSCCCCCCHHHHHHSCHHHHTTEECCSSCEEC
T ss_pred ccEECHHHhCCcccCCEEECCCCcCCeeCHHHhcCcccCCcCCEEECCCCCCCccCHHHhhhccHhhcceEEecCCCccC
Confidence 777777777778888888888888875444445 45777888888888887655566777766 3777788887776
Q ss_pred cC
Q 005038 624 EI 625 (717)
Q Consensus 624 ~~ 625 (717)
.+
T Consensus 204 ~C 205 (361)
T 2xot_A 204 DC 205 (361)
T ss_dssp CH
T ss_pred Cc
Confidence 53
No 102
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.79 E-value=1.1e-18 Score=166.41 Aligned_cols=155 Identities=19% Similarity=0.207 Sum_probs=125.3
Q ss_pred ccEEeccCcccccccCccccCCCCcCCEEeCCCCcCCcccchhhhCCCCCcEEEcCCCccccccchhccCCCCCCEEEcc
Q 005038 389 IKQVHLSKNMLHGQLKRGTFFNCSSLVTLDLSYNRLNGSIPDWVDGLSQLSHLILGHNNLEGEVSVQLCELNQLQLLDLS 468 (717)
Q Consensus 389 L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~ 468 (717)
-+.++++++.+. .+|.. + .+++++|++++|.+.+..+..|..+++|+.|++++|++++..+..|..+++|++|+++
T Consensus 13 ~~~v~c~~~~l~-~iP~~-l--~~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls 88 (220)
T 2v9t_B 13 NNIVDCRGKGLT-EIPTN-L--PETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLY 88 (220)
T ss_dssp TTEEECTTSCCS-SCCSS-C--CTTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEECC
T ss_pred CCEEEcCCCCcC-cCCCc-c--CcCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECC
Confidence 356777777774 45543 2 2678899999998887777788888899999999999988888888889999999999
Q ss_pred CCcCccCCCcccccccccccccCCCCCCcchhhhhhcccccccccccccceEEEeeccceeeeccccccccceeeCCCCc
Q 005038 469 NNNLHGPIPPCFDNTTLHESYSNSSSPDEQFEIFFSIEGHQGFLEKQNHEIFEFTTKNIAYIYQGKVLSLLSGLDLSCNK 548 (717)
Q Consensus 469 ~n~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~ 548 (717)
+|.+++..+..|..+. +|+.|+|++|+
T Consensus 89 ~N~l~~l~~~~f~~l~-----------------------------------------------------~L~~L~L~~N~ 115 (220)
T 2v9t_B 89 GNKITELPKSLFEGLF-----------------------------------------------------SLQLLLLNANK 115 (220)
T ss_dssp SSCCCCCCTTTTTTCT-----------------------------------------------------TCCEEECCSSC
T ss_pred CCcCCccCHhHccCCC-----------------------------------------------------CCCEEECCCCC
Confidence 9988866665554433 78889999999
Q ss_pred cCCCCcccccCCccCCeEeCCCcccCCCCCcCCCCCCCCCEEECCCCcCCcc
Q 005038 549 LIGHIPPQIGNLTRIQTLNLSHNNLTGSIPSTFSNLKHVESLDLSNNKLNGK 600 (717)
Q Consensus 549 l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~N~i~~~ 600 (717)
+.+..|..|..+++|++|+|++|++++..+..|..+++|++|+|++|++.+.
T Consensus 116 l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~c~ 167 (220)
T 2v9t_B 116 INCLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLRAIQTMHLAQNPFICD 167 (220)
T ss_dssp CCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCEECS
T ss_pred CCEeCHHHcCCCCCCCEEECCCCcCCEECHHHHhCCCCCCEEEeCCCCcCCC
Confidence 8888888888889999999999999877777888888999999999988753
No 103
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.78 E-value=1.8e-18 Score=164.08 Aligned_cols=130 Identities=28% Similarity=0.277 Sum_probs=58.7
Q ss_pred CCCEEEccCCccccccchhhhhCCCCCCEEEccCcccCccCcccccCCCCCCeEECcCCcCcccCcccccCCCCCCEEEc
Q 005038 244 FLQILDLSNNHLTGEIPEHLAVGCVNLQFLALSNNNLQGHLFSRNFNLTNLQWLQLEGNRFVGEIPQSLSKCSSLEGLYL 323 (717)
Q Consensus 244 ~L~~L~Ls~n~l~~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 323 (717)
+|++|++++|.++ .++...+..+++|++|++++|.+++..+..|..+++|++|++++|.+.+..+..+..+++|++|++
T Consensus 29 ~l~~L~l~~n~l~-~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L 107 (208)
T 2o6s_A 29 QTTYLDLETNSLK-SLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQLQSLPNGVFDKLTQLKELAL 107 (208)
T ss_dssp TCSEEECCSSCCC-CCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred CCcEEEcCCCccC-cCChhhhcccccCcEEECCCCccCccChhhcCCCCCcCEEECCCCcCCccCHhHhcCccCCCEEEc
Confidence 4555555555554 334333334455555555555544433334444444555555444444333333444444444444
Q ss_pred cCCcCcCcCCcccCCCCCCCEEEccCCcccCCcccccCCCCCCCEEEccCC
Q 005038 324 NNNSLLGKIPRWLGNLTRLQYIIMPNNHLEGPIPVEFCQLDSLQILDISDN 374 (717)
Q Consensus 324 ~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n 374 (717)
++|.+.+..+..|..+++|+.|++++|.+++..+..+..+++|++|++++|
T Consensus 108 ~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N 158 (208)
T 2o6s_A 108 NTNQLQSLPDGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDN 158 (208)
T ss_dssp CSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSC
T ss_pred CCCcCcccCHhHhccCCcCCEEECCCCccceeCHHHhccCCCccEEEecCC
Confidence 444444333333444444444444444444333333444444444444444
No 104
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.77 E-value=3.1e-18 Score=185.17 Aligned_cols=187 Identities=24% Similarity=0.331 Sum_probs=119.0
Q ss_pred CCCEEEccCCcccCCcccccCCCCCCCEEEccCCcCcccCCCccccccccEEeccCcccccccCccccCCCCcCCEEeCC
Q 005038 341 RLQYIIMPNNHLEGPIPVEFCQLDSLQILDISDNNISGSLPSCFHPLSIKQVHLSKNMLHGQLKRGTFFNCSSLVTLDLS 420 (717)
Q Consensus 341 ~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~L~ 420 (717)
+++.|++++|.+++ +|..+ .++|+.|++++|.++ .++ ..+++|++|+++
T Consensus 60 ~L~~L~Ls~n~L~~-lp~~l--~~~L~~L~Ls~N~l~------------------------~ip----~~l~~L~~L~Ls 108 (571)
T 3cvr_A 60 QFSELQLNRLNLSS-LPDNL--PPQITVLEITQNALI------------------------SLP----ELPASLEYLDAC 108 (571)
T ss_dssp TCSEEECCSSCCSC-CCSCC--CTTCSEEECCSSCCS------------------------CCC----CCCTTCCEEECC
T ss_pred CccEEEeCCCCCCc-cCHhH--cCCCCEEECcCCCCc------------------------ccc----cccCCCCEEEcc
Confidence 66666666666664 34333 255666666666655 233 124667777777
Q ss_pred CCcCCcccchhhhCCCCCcEEEcCCCccccccchhccCCCCCCEEEccCCcCccCCCcccccccccccccCCCCCCcchh
Q 005038 421 YNRLNGSIPDWVDGLSQLSHLILGHNNLEGEVSVQLCELNQLQLLDLSNNNLHGPIPPCFDNTTLHESYSNSSSPDEQFE 500 (717)
Q Consensus 421 ~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 500 (717)
+|.+++ +|. +.+ +|+.|++++|++++ +|. .+++|+.|++++|.+++ +|. .
T Consensus 109 ~N~l~~-ip~-l~~--~L~~L~Ls~N~l~~-lp~---~l~~L~~L~Ls~N~l~~-lp~---~------------------ 158 (571)
T 3cvr_A 109 DNRLST-LPE-LPA--SLKHLDVDNNQLTM-LPE---LPALLEYINADNNQLTM-LPE---L------------------ 158 (571)
T ss_dssp SSCCSC-CCC-CCT--TCCEEECCSSCCSC-CCC---CCTTCCEEECCSSCCSC-CCC---C------------------
T ss_pred CCCCCC-cch-hhc--CCCEEECCCCcCCC-CCC---cCccccEEeCCCCccCc-CCC---c------------------
Confidence 777765 444 443 77777777777775 333 46777777777777764 222 0
Q ss_pred hhhhcccccccccccccceEEEeeccceeeeccccccccceeeCCCCccCCCCcccccCCccCCeEeCCCcccCCCCCcC
Q 005038 501 IFFSIEGHQGFLEKQNHEIFEFTTKNIAYIYQGKVLSLLSGLDLSCNKLIGHIPPQIGNLTRIQTLNLSHNNLTGSIPST 580 (717)
Q Consensus 501 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~ 580 (717)
+++|+.|+|++|++++ +|. |. ++|+.|+|++|+|+ .+|.
T Consensus 159 -----------------------------------l~~L~~L~Ls~N~L~~-lp~-l~--~~L~~L~Ls~N~L~-~lp~- 197 (571)
T 3cvr_A 159 -----------------------------------PTSLEVLSVRNNQLTF-LPE-LP--ESLEALDVSTNLLE-SLPA- 197 (571)
T ss_dssp -----------------------------------CTTCCEEECCSSCCSC-CCC-CC--TTCCEEECCSSCCS-SCCC-
T ss_pred -----------------------------------CCCcCEEECCCCCCCC-cch-hh--CCCCEEECcCCCCC-chhh-
Confidence 2357777777777775 444 54 77777777777777 5555
Q ss_pred CCCCCCC-------CEEECCCCcCCccCchhhcCCCCCCEEeccCCcCeecCCCCCccc
Q 005038 581 FSNLKHV-------ESLDLSNNKLNGKIPHQLVELKTLEVFSVAYNNLSGEIPEWKAQF 632 (717)
Q Consensus 581 ~~~l~~L-------~~L~L~~N~i~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~~ 632 (717)
|.. +| +.|+|++|+++ .+|..+..+++|+.|++++|++++.+|..+..+
T Consensus 198 ~~~--~L~~~~~~L~~L~Ls~N~l~-~lp~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l 253 (571)
T 3cvr_A 198 VPV--RNHHSEETEIFFRCRENRIT-HIPENILSLDPTCTIILEDNPLSSRIRESLSQQ 253 (571)
T ss_dssp CC----------CCEEEECCSSCCC-CCCGGGGGSCTTEEEECCSSSCCHHHHHHHHHH
T ss_pred HHH--hhhcccccceEEecCCCcce-ecCHHHhcCCCCCEEEeeCCcCCCcCHHHHHHh
Confidence 544 56 77888888877 567666677888888888888877777655444
No 105
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.77 E-value=5.6e-18 Score=162.79 Aligned_cols=156 Identities=24% Similarity=0.237 Sum_probs=120.8
Q ss_pred CCEEeCCCCcCCcccchhhhCCCCCcEEEcCCCccccccchhccCCCCCCEEEccCCcCccCCCcccccccccccccCCC
Q 005038 414 LVTLDLSYNRLNGSIPDWVDGLSQLSHLILGHNNLEGEVSVQLCELNQLQLLDLSNNNLHGPIPPCFDNTTLHESYSNSS 493 (717)
Q Consensus 414 L~~L~L~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~~~ 493 (717)
.+.++.+++.+. .+|..+ .++|++|++++|++++..+..+..+++|+.|++++|.+.+..+..|..+
T Consensus 21 ~~~v~c~~~~l~-~ip~~~--~~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l---------- 87 (229)
T 3e6j_A 21 GTTVDCRSKRHA-SVPAGI--PTNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSL---------- 87 (229)
T ss_dssp TTEEECTTSCCS-SCCSCC--CTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTC----------
T ss_pred CCEeEccCCCcC-ccCCCC--CCCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCCCCcChhhcccC----------
Confidence 456777777776 344433 2678888888888887777777778888888888888765555544443
Q ss_pred CCCcchhhhhhcccccccccccccceEEEeeccceeeeccccccccceeeCCCCccCCCCcccccCCccCCeEeCCCccc
Q 005038 494 SPDEQFEIFFSIEGHQGFLEKQNHEIFEFTTKNIAYIYQGKVLSLLSGLDLSCNKLIGHIPPQIGNLTRIQTLNLSHNNL 573 (717)
Q Consensus 494 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l 573 (717)
+.|+.|+|++|++++..+..|..+++|++|+|++|++
T Consensus 88 -------------------------------------------~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N~l 124 (229)
T 3e6j_A 88 -------------------------------------------TQLTVLDLGTNQLTVLPSAVFDRLVHLKELFMCCNKL 124 (229)
T ss_dssp -------------------------------------------TTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCC
T ss_pred -------------------------------------------CCcCEEECCCCcCCccChhHhCcchhhCeEeccCCcc
Confidence 3688888888888877777788888999999999998
Q ss_pred CCCCCcCCCCCCCCCEEECCCCcCCccCchhhcCCCCCCEEeccCCcCeecCC
Q 005038 574 TGSIPSTFSNLKHVESLDLSNNKLNGKIPHQLVELKTLEVFSVAYNNLSGEIP 626 (717)
Q Consensus 574 ~~~~p~~~~~l~~L~~L~L~~N~i~~~~p~~~~~l~~L~~L~l~~N~l~~~~p 626 (717)
+ .+|..+..+++|++|+|++|++++..+..+..+++|+.|++++|++.+.++
T Consensus 125 ~-~lp~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~c~ 176 (229)
T 3e6j_A 125 T-ELPRGIERLTHLTHLALDQNQLKSIPHGAFDRLSSLTHAYLFGNPWDCECR 176 (229)
T ss_dssp C-SCCTTGGGCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECTTSCBCTTBG
T ss_pred c-ccCcccccCCCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCCccCCcc
Confidence 8 678888888999999999999987666778888999999999999887765
No 106
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.77 E-value=5.8e-18 Score=162.71 Aligned_cols=157 Identities=22% Similarity=0.256 Sum_probs=139.2
Q ss_pred CCcEEEcCCCccccccchhccCCCCCCEEEccCCcCccCCCcccccccccccccCCCCCCcchhhhhhcccccccccccc
Q 005038 437 QLSHLILGHNNLEGEVSVQLCELNQLQLLDLSNNNLHGPIPPCFDNTTLHESYSNSSSPDEQFEIFFSIEGHQGFLEKQN 516 (717)
Q Consensus 437 ~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 516 (717)
+.+.++.+++.++.. |..+ .++|++|++++|.+++..|..|..+.
T Consensus 20 s~~~v~c~~~~l~~i-p~~~--~~~L~~L~Ls~n~i~~~~~~~~~~l~-------------------------------- 64 (229)
T 3e6j_A 20 SGTTVDCRSKRHASV-PAGI--PTNAQILYLHDNQITKLEPGVFDSLI-------------------------------- 64 (229)
T ss_dssp ETTEEECTTSCCSSC-CSCC--CTTCSEEECCSSCCCCCCTTTTTTCT--------------------------------
T ss_pred eCCEeEccCCCcCcc-CCCC--CCCCCEEEcCCCccCccCHHHhhCcc--------------------------------
Confidence 367899999999844 4433 38999999999999988887776544
Q ss_pred cceEEEeeccceeeeccccccccceeeCCCCccCCCCcccccCCccCCeEeCCCcccCCCCCcCCCCCCCCCEEECCCCc
Q 005038 517 HEIFEFTTKNIAYIYQGKVLSLLSGLDLSCNKLIGHIPPQIGNLTRIQTLNLSHNNLTGSIPSTFSNLKHVESLDLSNNK 596 (717)
Q Consensus 517 ~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~N~ 596 (717)
.|+.|+|++|++.+..+..|..+++|++|+|++|++++..+..|..+++|++|+|++|+
T Consensus 65 ---------------------~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N~ 123 (229)
T 3e6j_A 65 ---------------------NLKELYLGSNQLGALPVGVFDSLTQLTVLDLGTNQLTVLPSAVFDRLVHLKELFMCCNK 123 (229)
T ss_dssp ---------------------TCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred ---------------------CCcEEECCCCCCCCcChhhcccCCCcCEEECCCCcCCccChhHhCcchhhCeEeccCCc
Confidence 79999999999987777788999999999999999998878889999999999999999
Q ss_pred CCccCchhhcCCCCCCEEeccCCcCeecCCCCCcccCCCCcccccCCcCCCCCC
Q 005038 597 LNGKIPHQLVELKTLEVFSVAYNNLSGEIPEWKAQFATFNESSYEGNTFLCGLP 650 (717)
Q Consensus 597 i~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~~~~l~~~~~~~n~~~c~~~ 650 (717)
++ .+|..+..+++|++|++++|++++..+..+..+..++.+.+.+||+.|+|+
T Consensus 124 l~-~lp~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~c~ 176 (229)
T 3e6j_A 124 LT-ELPRGIERLTHLTHLALDQNQLKSIPHGAFDRLSSLTHAYLFGNPWDCECR 176 (229)
T ss_dssp CC-SCCTTGGGCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECTTSCBCTTBG
T ss_pred cc-ccCcccccCCCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCCccCCcc
Confidence 99 788999999999999999999998777778889999999999999999985
No 107
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.76 E-value=2.7e-18 Score=177.55 Aligned_cols=112 Identities=26% Similarity=0.241 Sum_probs=55.7
Q ss_pred CEEEccCCcCcccCCCccccccccEEeccCcccccccCccccC-CCCcCCEEeCCCCcCCcccchhhhCCCCCcEEEcCC
Q 005038 367 QILDISDNNISGSLPSCFHPLSIKQVHLSKNMLHGQLKRGTFF-NCSSLVTLDLSYNRLNGSIPDWVDGLSQLSHLILGH 445 (717)
Q Consensus 367 ~~L~l~~n~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~-~~~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~L~~ 445 (717)
+.++++++.+... |..+ +..++.|++++|.+.+ ++...|. .+++|++|+|++|++.+..+..|.++++|++|+|++
T Consensus 21 ~~l~c~~~~l~~i-P~~~-~~~l~~L~Ls~N~l~~-l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~ 97 (361)
T 2xot_A 21 NILSCSKQQLPNV-PQSL-PSYTALLDLSHNNLSR-LRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSS 97 (361)
T ss_dssp TEEECCSSCCSSC-CSSC-CTTCSEEECCSSCCCE-ECTTSSSSCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCS
T ss_pred CEEEeCCCCcCcc-CccC-CCCCCEEECCCCCCCc-cChhhhhhcccccCEEECCCCcCCccChhhccCCCCCCEEECCC
Confidence 3455555555432 2111 2335555555555533 2222244 555555555555555544444555555555555555
Q ss_pred CccccccchhccCCCCCCEEEccCCcCccCCCcccc
Q 005038 446 NNLEGEVSVQLCELNQLQLLDLSNNNLHGPIPPCFD 481 (717)
Q Consensus 446 n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~ 481 (717)
|++++..+..|..+++|+.|+|++|++++..|..|.
T Consensus 98 N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~ 133 (361)
T 2xot_A 98 NHLHTLDEFLFSDLQALEVLLLYNNHIVVVDRNAFE 133 (361)
T ss_dssp SCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTT
T ss_pred CcCCcCCHHHhCCCcCCCEEECCCCcccEECHHHhC
Confidence 555555454555555555555555555544444433
No 108
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.75 E-value=1.3e-17 Score=166.67 Aligned_cols=152 Identities=26% Similarity=0.383 Sum_probs=123.8
Q ss_pred cCCCCcCCEEeCCCCcCCcccchhhhCCCCCcEEEcCCCccccccchhccCCCCCCEEEccCCcCccCCCcccccccccc
Q 005038 408 FFNCSSLVTLDLSYNRLNGSIPDWVDGLSQLSHLILGHNNLEGEVSVQLCELNQLQLLDLSNNNLHGPIPPCFDNTTLHE 487 (717)
Q Consensus 408 ~~~~~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~ 487 (717)
+..+++|++|++++|++++..+ +..+++|++|++++|++++. ..+..+++|+.|++++|.+++. ..+.
T Consensus 64 ~~~l~~L~~L~L~~n~l~~~~~--l~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~L~~n~i~~~--~~l~------ 131 (291)
T 1h6t_A 64 IQYLPNVTKLFLNGNKLTDIKP--LANLKNLGWLFLDENKVKDL--SSLKDLKKLKSLSLEHNGISDI--NGLV------ 131 (291)
T ss_dssp GGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCCG--GGGTTCTTCCEEECTTSCCCCC--GGGG------
T ss_pred HhcCCCCCEEEccCCccCCCcc--cccCCCCCEEECCCCcCCCC--hhhccCCCCCEEECCCCcCCCC--hhhc------
Confidence 6667889999999998886544 88889999999999998853 3488889999999999988653 1122
Q ss_pred cccCCCCCCcchhhhhhcccccccccccccceEEEeeccceeeeccccccccceeeCCCCccCCCCcccccCCccCCeEe
Q 005038 488 SYSNSSSPDEQFEIFFSIEGHQGFLEKQNHEIFEFTTKNIAYIYQGKVLSLLSGLDLSCNKLIGHIPPQIGNLTRIQTLN 567 (717)
Q Consensus 488 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~ 567 (717)
.++.|+.|++++|++++. ..+..+++|++|+
T Consensus 132 -----------------------------------------------~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~ 162 (291)
T 1h6t_A 132 -----------------------------------------------HLPQLESLYLGNNKITDI--TVLSRLTKLDTLS 162 (291)
T ss_dssp -----------------------------------------------GCTTCCEEECCSSCCCCC--GGGGGCTTCSEEE
T ss_pred -----------------------------------------------CCCCCCEEEccCCcCCcc--hhhccCCCCCEEE
Confidence 234799999999998865 5788999999999
Q ss_pred CCCcccCCCCCcCCCCCCCCCEEECCCCcCCccCchhhcCCCCCCEEeccCCcCeec
Q 005038 568 LSHNNLTGSIPSTFSNLKHVESLDLSNNKLNGKIPHQLVELKTLEVFSVAYNNLSGE 624 (717)
Q Consensus 568 Ls~n~l~~~~p~~~~~l~~L~~L~L~~N~i~~~~p~~~~~l~~L~~L~l~~N~l~~~ 624 (717)
+++|.+++..| +..+++|++|++++|++++ +| .+..+++|+.|++++|+++..
T Consensus 163 L~~N~l~~~~~--l~~l~~L~~L~L~~N~i~~-l~-~l~~l~~L~~L~l~~n~i~~~ 215 (291)
T 1h6t_A 163 LEDNQISDIVP--LAGLTKLQNLYLSKNHISD-LR-ALAGLKNLDVLELFSQECLNK 215 (291)
T ss_dssp CCSSCCCCCGG--GTTCTTCCEEECCSSCCCB-CG-GGTTCTTCSEEEEEEEEEECC
T ss_pred ccCCccccchh--hcCCCccCEEECCCCcCCC-Ch-hhccCCCCCEEECcCCcccCC
Confidence 99999996654 8899999999999999985 45 488999999999999998853
No 109
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.75 E-value=1.5e-17 Score=179.79 Aligned_cols=188 Identities=28% Similarity=0.368 Sum_probs=131.0
Q ss_pred CCCEEEccCCcCcCcCCcccCCCCCCCEEEccCCcccCCcccccCCCCCCCEEEccCCcCcccCCCccccccccEEeccC
Q 005038 317 SLEGLYLNNNSLLGKIPRWLGNLTRLQYIIMPNNHLEGPIPVEFCQLDSLQILDISDNNISGSLPSCFHPLSIKQVHLSK 396 (717)
Q Consensus 317 ~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~L~~L~l~~ 396 (717)
+++.|++++|.+.+ +|..+. ++|+.|++++|.++ .+| ..+++|++|++++|.+++ +|. +
T Consensus 60 ~L~~L~Ls~n~L~~-lp~~l~--~~L~~L~Ls~N~l~-~ip---~~l~~L~~L~Ls~N~l~~-ip~-l------------ 118 (571)
T 3cvr_A 60 QFSELQLNRLNLSS-LPDNLP--PQITVLEITQNALI-SLP---ELPASLEYLDACDNRLST-LPE-L------------ 118 (571)
T ss_dssp TCSEEECCSSCCSC-CCSCCC--TTCSEEECCSSCCS-CCC---CCCTTCCEEECCSSCCSC-CCC-C------------
T ss_pred CccEEEeCCCCCCc-cCHhHc--CCCCEEECcCCCCc-ccc---cccCCCCEEEccCCCCCC-cch-h------------
Confidence 89999999999986 666553 78999999999999 455 457899999999998875 332 1
Q ss_pred cccccccCccccCCCCcCCEEeCCCCcCCcccchhhhCCCCCcEEEcCCCccccccchhccCCCCCCEEEccCCcCccCC
Q 005038 397 NMLHGQLKRGTFFNCSSLVTLDLSYNRLNGSIPDWVDGLSQLSHLILGHNNLEGEVSVQLCELNQLQLLDLSNNNLHGPI 476 (717)
Q Consensus 397 n~~~~~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~ 476 (717)
.. +|++|++++|.+++ +|. .+++|+.|++++|++++ +|. .+++|+.|++++|++++ +
T Consensus 119 ------------~~--~L~~L~Ls~N~l~~-lp~---~l~~L~~L~Ls~N~l~~-lp~---~l~~L~~L~Ls~N~L~~-l 175 (571)
T 3cvr_A 119 ------------PA--SLKHLDVDNNQLTM-LPE---LPALLEYINADNNQLTM-LPE---LPTSLEVLSVRNNQLTF-L 175 (571)
T ss_dssp ------------CT--TCCEEECCSSCCSC-CCC---CCTTCCEEECCSSCCSC-CCC---CCTTCCEEECCSSCCSC-C
T ss_pred ------------hc--CCCEEECCCCcCCC-CCC---cCccccEEeCCCCccCc-CCC---cCCCcCEEECCCCCCCC-c
Confidence 11 56666666666664 343 45667777777777665 332 45667777777777664 3
Q ss_pred CcccccccccccccCCCCCCcchhhhhhcccccccccccccceEEEeeccceeeeccccccccceeeCCCCccCCCCccc
Q 005038 477 PPCFDNTTLHESYSNSSSPDEQFEIFFSIEGHQGFLEKQNHEIFEFTTKNIAYIYQGKVLSLLSGLDLSCNKLIGHIPPQ 556 (717)
Q Consensus 477 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~ 556 (717)
|. +. ++|+.|+|++|+++ .+|.
T Consensus 176 p~-l~-------------------------------------------------------~~L~~L~Ls~N~L~-~lp~- 197 (571)
T 3cvr_A 176 PE-LP-------------------------------------------------------ESLEALDVSTNLLE-SLPA- 197 (571)
T ss_dssp CC-CC-------------------------------------------------------TTCCEEECCSSCCS-SCCC-
T ss_pred ch-hh-------------------------------------------------------CCCCEEECcCCCCC-chhh-
Confidence 32 21 15777777777776 4444
Q ss_pred ccCCccC-------CeEeCCCcccCCCCCcCCCCCCCCCEEECCCCcCCccCchhhcCCC
Q 005038 557 IGNLTRI-------QTLNLSHNNLTGSIPSTFSNLKHVESLDLSNNKLNGKIPHQLVELK 609 (717)
Q Consensus 557 l~~l~~L-------~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~N~i~~~~p~~~~~l~ 609 (717)
+.. +| +.|+|++|.|+ .+|..+..+++|+.|+|++|++++..|..+..++
T Consensus 198 ~~~--~L~~~~~~L~~L~Ls~N~l~-~lp~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~ 254 (571)
T 3cvr_A 198 VPV--RNHHSEETEIFFRCRENRIT-HIPENILSLDPTCTIILEDNPLSSRIRESLSQQT 254 (571)
T ss_dssp CC----------CCEEEECCSSCCC-CCCGGGGGSCTTEEEECCSSSCCHHHHHHHHHHH
T ss_pred HHH--hhhcccccceEEecCCCcce-ecCHHHhcCCCCCEEEeeCCcCCCcCHHHHHHhh
Confidence 443 56 88888888888 5677777788888888888888888887776644
No 110
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.72 E-value=4.2e-17 Score=151.96 Aligned_cols=135 Identities=23% Similarity=0.369 Sum_probs=103.6
Q ss_pred ccceeeCCCCccCCCCcc-cccCCccCCeEeCCCcccCCCCCcCCCCCCCCCEEECCCCcCCccCchhhcCCCCCCEEec
Q 005038 538 LLSGLDLSCNKLIGHIPP-QIGNLTRIQTLNLSHNNLTGSIPSTFSNLKHVESLDLSNNKLNGKIPHQLVELKTLEVFSV 616 (717)
Q Consensus 538 ~L~~L~L~~n~l~~~~~~-~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~N~i~~~~p~~~~~l~~L~~L~l 616 (717)
.++.|++++|++.+..+. .|..+++|++|+|++|.+++..|..|.++++|++|+|++|++++..|..|..+++|++|++
T Consensus 30 ~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L 109 (192)
T 1w8a_A 30 HTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGENKIKEISNKMFLGLHQLKTLNL 109 (192)
T ss_dssp TCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSCCCCEECSSSSTTCTTCCEEEC
T ss_pred CCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEECCCCcCCccCHHHhcCCCCCCEEEC
Confidence 577788888888766554 3777888888888888888777778888888888888888888777777778888888888
Q ss_pred cCCcCeecCCCCCcccCCCCcccccCCcCCCCCCC----------------CCCCCCCCCCCCCCCCCCCCc
Q 005038 617 AYNNLSGEIPEWKAQFATFNESSYEGNTFLCGLPL----------------PICRSPATMPEASIGNEQDDN 672 (717)
Q Consensus 617 ~~N~l~~~~p~~~~~~~~l~~~~~~~n~~~c~~~l----------------~~C~~~~~~~~~~~~~~~~~~ 672 (717)
++|++++..|..+..+..++.+.+.+|++.|+|++ ..|..|...++..+.+.....
T Consensus 110 ~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c~c~l~~~~~~l~~~~~~~~~~~C~~P~~l~~~~l~~l~~~~ 181 (192)
T 1w8a_A 110 YDNQISCVMPGSFEHLNSLTSLNLASNPFNCNCHLAWFAEWLRKKSLNGGAARCGAPSKVRDVQIKDLPHSE 181 (192)
T ss_dssp CSSCCCEECTTSSTTCTTCCEEECTTCCBCCSGGGHHHHHHHHHHCCSGGGCBBCSSTTTTTSBGGGSCTTT
T ss_pred CCCcCCeeCHHHhhcCCCCCEEEeCCCCccCcCcchHHHHHHHHcCCCCCCCCCCCChHHcCCChhhCcHhh
Confidence 88888887777777777788888888888887764 138888888887665555443
No 111
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.71 E-value=3.2e-17 Score=153.65 Aligned_cols=154 Identities=16% Similarity=0.263 Sum_probs=120.1
Q ss_pred CCCCcCCEEeCCCCcCCcccchhhhCCCCCcEEEcCCCccccccchhccCCCCCCEEEccCCcCccCCCccccccccccc
Q 005038 409 FNCSSLVTLDLSYNRLNGSIPDWVDGLSQLSHLILGHNNLEGEVSVQLCELNQLQLLDLSNNNLHGPIPPCFDNTTLHES 488 (717)
Q Consensus 409 ~~~~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~ 488 (717)
..+++|++|++++|.+. .+| .+..+++|++|++++|.++. +..+..+++|++|++++|.+++..+..+..+
T Consensus 41 ~~l~~L~~L~l~~n~i~-~l~-~l~~l~~L~~L~l~~n~~~~--~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l----- 111 (197)
T 4ezg_A 41 AQMNSLTYITLANINVT-DLT-GIEYAHNIKDLTINNIHATN--YNPISGLSNLERLRIMGKDVTSDKIPNLSGL----- 111 (197)
T ss_dssp HHHHTCCEEEEESSCCS-CCT-TGGGCTTCSEEEEESCCCSC--CGGGTTCTTCCEEEEECTTCBGGGSCCCTTC-----
T ss_pred hhcCCccEEeccCCCcc-ChH-HHhcCCCCCEEEccCCCCCc--chhhhcCCCCCEEEeECCccCcccChhhcCC-----
Confidence 45577888888888887 344 57788888888888887663 3467788889999998888876555555443
Q ss_pred ccCCCCCCcchhhhhhcccccccccccccceEEEeeccceeeeccccccccceeeCCCCccCCCCcccccCCccCCeEeC
Q 005038 489 YSNSSSPDEQFEIFFSIEGHQGFLEKQNHEIFEFTTKNIAYIYQGKVLSLLSGLDLSCNKLIGHIPPQIGNLTRIQTLNL 568 (717)
Q Consensus 489 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L 568 (717)
++|+.|++++|++++..+..+..+++|++|++
T Consensus 112 ------------------------------------------------~~L~~L~Ls~n~i~~~~~~~l~~l~~L~~L~L 143 (197)
T 4ezg_A 112 ------------------------------------------------TSLTLLDISHSAHDDSILTKINTLPKVNSIDL 143 (197)
T ss_dssp ------------------------------------------------TTCCEEECCSSBCBGGGHHHHTTCSSCCEEEC
T ss_pred ------------------------------------------------CCCCEEEecCCccCcHhHHHHhhCCCCCEEEc
Confidence 37888999999988777888899999999999
Q ss_pred CCcc-cCCCCCcCCCCCCCCCEEECCCCcCCccCchhhcCCCCCCEEeccCCcCee
Q 005038 569 SHNN-LTGSIPSTFSNLKHVESLDLSNNKLNGKIPHQLVELKTLEVFSVAYNNLSG 623 (717)
Q Consensus 569 s~n~-l~~~~p~~~~~l~~L~~L~L~~N~i~~~~p~~~~~l~~L~~L~l~~N~l~~ 623 (717)
++|+ ++ .+| .+..+++|++|++++|++++ ++ .+..+++|+.|++++|++.+
T Consensus 144 ~~n~~i~-~~~-~l~~l~~L~~L~l~~n~i~~-~~-~l~~l~~L~~L~l~~N~i~~ 195 (197)
T 4ezg_A 144 SYNGAIT-DIM-PLKTLPELKSLNIQFDGVHD-YR-GIEDFPKLNQLYAFSQTIGG 195 (197)
T ss_dssp CSCTBCC-CCG-GGGGCSSCCEEECTTBCCCC-CT-TGGGCSSCCEEEECBC----
T ss_pred cCCCCcc-ccH-hhcCCCCCCEEECCCCCCcC-hH-HhccCCCCCEEEeeCcccCC
Confidence 9998 66 445 68889999999999999985 44 68889999999999998764
No 112
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.71 E-value=3.5e-17 Score=152.33 Aligned_cols=135 Identities=21% Similarity=0.338 Sum_probs=115.4
Q ss_pred ccceeeCCCCccCCCCcccccCCccCCeEeCCCcccCCCCCcCCCCCCCCCEEECCCCcCCccCchhhcCCCCCCEEecc
Q 005038 538 LLSGLDLSCNKLIGHIPPQIGNLTRIQTLNLSHNNLTGSIPSTFSNLKHVESLDLSNNKLNGKIPHQLVELKTLEVFSVA 617 (717)
Q Consensus 538 ~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~N~i~~~~p~~~~~l~~L~~L~l~ 617 (717)
.++.|++++|+++ .+|..|.++++|++|+|++|.++++.+..|.++++|++|+|++|++++..|..|..+++|++|+++
T Consensus 32 ~l~~L~L~~n~i~-~ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~L~ 110 (193)
T 2wfh_A 32 DVTELYLDGNQFT-LVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRLRCIPPRTFDGLKSLRLLSLH 110 (193)
T ss_dssp TCCEEECCSSCCC-SCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECC
T ss_pred CCCEEECCCCcCc-hhHHHhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCCCccCEeCHHHhCCCCCCCEEECC
Confidence 6889999999998 667889999999999999999998888889999999999999999998888889999999999999
Q ss_pred CCcCeecCCCCCcccCCCCcccccCCcCCCCCCCC----------------CCCCCCCCCCCCCCCCCCCcc
Q 005038 618 YNNLSGEIPEWKAQFATFNESSYEGNTFLCGLPLP----------------ICRSPATMPEASIGNEQDDNL 673 (717)
Q Consensus 618 ~N~l~~~~p~~~~~~~~l~~~~~~~n~~~c~~~l~----------------~C~~~~~~~~~~~~~~~~~~~ 673 (717)
+|.++...+..+..+..++.+.+.+||+.|+|.+. .|..|....++.+.....+.+
T Consensus 111 ~N~l~~~~~~~~~~l~~L~~L~L~~N~~~C~c~l~~l~~~~~~~~~~~~~~~C~~P~~l~g~~l~~~~~~~~ 182 (193)
T 2wfh_A 111 GNDISVVPEGAFNDLSALSHLAIGANPLYCDCNMQWLSDWVKSEYKEPGIARCAGPGEMADKLLLTTPSKKF 182 (193)
T ss_dssp SSCCCBCCTTTTTTCTTCCEEECCSSCEECSGGGHHHHHHHHHSSCCCSCCBEEESGGGTTCBTTTSCGGGC
T ss_pred CCCCCeeChhhhhcCccccEEEeCCCCeecCCcCHHHHHHHHhccCCCCCcCcCCchHHCCCCcccCChHHe
Confidence 99999766666788888999999999999988541 388888888877766665544
No 113
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.71 E-value=9.8e-17 Score=160.18 Aligned_cols=169 Identities=24% Similarity=0.349 Sum_probs=95.4
Q ss_pred CCCcCEEEccCCcCCccCCccccccCCCCcEEECCCCCCCccCCccccCCCCCCEEEccCCccccccchhhhhCCCCCCE
Q 005038 193 HKRLRQLDVSNNNIRGHIPVKIGDVLPSLYVFNNSMNALDGSIPSSFGNMKFLQILDLSNNHLTGEIPEHLAVGCVNLQF 272 (717)
Q Consensus 193 ~~~L~~L~ls~n~i~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~L~~ 272 (717)
+++|++|++++|.++ .++. ...+++|++|++++|.+.+..+ +..+++|++|++++|.++ .++. +..+++|++
T Consensus 45 l~~L~~L~l~~~~i~-~~~~--~~~l~~L~~L~L~~n~l~~~~~--l~~l~~L~~L~l~~n~l~-~~~~--l~~l~~L~~ 116 (291)
T 1h6t_A 45 LNSIDQIIANNSDIK-SVQG--IQYLPNVTKLFLNGNKLTDIKP--LANLKNLGWLFLDENKVK-DLSS--LKDLKKLKS 116 (291)
T ss_dssp HHTCCEEECTTSCCC-CCTT--GGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCC-CGGG--GTTCTTCCE
T ss_pred cCcccEEEccCCCcc-cChh--HhcCCCCCEEEccCCccCCCcc--cccCCCCCEEECCCCcCC-CChh--hccCCCCCE
Confidence 344555555555444 2221 2224455555555555543322 556666666666666665 3333 234666666
Q ss_pred EEccCcccCccCcccccCCCCCCeEECcCCcCcccCcccccCCCCCCEEEccCCcCcCcCCcccCCCCCCCEEEccCCcc
Q 005038 273 LALSNNNLQGHLFSRNFNLTNLQWLQLEGNRFVGEIPQSLSKCSSLEGLYLNNNSLLGKIPRWLGNLTRLQYIIMPNNHL 352 (717)
Q Consensus 273 L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~l~~n~~ 352 (717)
|++++|.+++. ..+..+++|++|++++|.+.+. ..+..+++|++|++++|.+.+..+ +..+++|+.|++++|.+
T Consensus 117 L~L~~n~i~~~--~~l~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~L~~N~l~~~~~--l~~l~~L~~L~L~~N~i 190 (291)
T 1h6t_A 117 LSLEHNGISDI--NGLVHLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSKNHI 190 (291)
T ss_dssp EECTTSCCCCC--GGGGGCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCCCGG--GTTCTTCCEEECCSSCC
T ss_pred EECCCCcCCCC--hhhcCCCCCCEEEccCCcCCcc--hhhccCCCCCEEEccCCccccchh--hcCCCccCEEECCCCcC
Confidence 66666666542 3455666666666666666643 346666666666666666664333 66666666666666666
Q ss_pred cCCcccccCCCCCCCEEEccCCcCc
Q 005038 353 EGPIPVEFCQLDSLQILDISDNNIS 377 (717)
Q Consensus 353 ~~~~~~~~~~l~~L~~L~l~~n~~~ 377 (717)
++. + .+..+++|+.|++++|++.
T Consensus 191 ~~l-~-~l~~l~~L~~L~l~~n~i~ 213 (291)
T 1h6t_A 191 SDL-R-ALAGLKNLDVLELFSQECL 213 (291)
T ss_dssp CBC-G-GGTTCTTCSEEEEEEEEEE
T ss_pred CCC-h-hhccCCCCCEEECcCCccc
Confidence 643 2 3666666777777666654
No 114
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.70 E-value=1.7e-16 Score=173.82 Aligned_cols=152 Identities=26% Similarity=0.375 Sum_probs=109.2
Q ss_pred cCCCCcCCEEeCCCCcCCcccchhhhCCCCCcEEEcCCCccccccchhccCCCCCCEEEccCCcCccCCCcccccccccc
Q 005038 408 FFNCSSLVTLDLSYNRLNGSIPDWVDGLSQLSHLILGHNNLEGEVSVQLCELNQLQLLDLSNNNLHGPIPPCFDNTTLHE 487 (717)
Q Consensus 408 ~~~~~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~ 487 (717)
+..+++|+.|+|++|.+.+..+ +..+++|+.|+|++|++.+. ..+..+++|+.|+|++|.+.+. + .+.
T Consensus 61 l~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~l~~l--~~l~~l~~L~~L~Ls~N~l~~l-~-~l~------ 128 (605)
T 1m9s_A 61 IQYLPNVTKLFLNGNKLTDIKP--LTNLKNLGWLFLDENKIKDL--SSLKDLKKLKSLSLEHNGISDI-N-GLV------ 128 (605)
T ss_dssp GGGCTTCCEEECTTSCCCCCGG--GGGCTTCCEEECCSSCCCCC--TTSTTCTTCCEEECTTSCCCCC-G-GGG------
T ss_pred HccCCCCCEEEeeCCCCCCChh--hccCCCCCEEECcCCCCCCC--hhhccCCCCCEEEecCCCCCCC-c-ccc------
Confidence 5667777788888777775544 67777888888888877743 2577777888888888777642 1 111
Q ss_pred cccCCCCCCcchhhhhhcccccccccccccceEEEeeccceeeeccccccccceeeCCCCccCCCCcccccCCccCCeEe
Q 005038 488 SYSNSSSPDEQFEIFFSIEGHQGFLEKQNHEIFEFTTKNIAYIYQGKVLSLLSGLDLSCNKLIGHIPPQIGNLTRIQTLN 567 (717)
Q Consensus 488 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~ 567 (717)
.++.|+.|+|++|++.+. ..+..+++|+.|+
T Consensus 129 -----------------------------------------------~l~~L~~L~Ls~N~l~~l--~~l~~l~~L~~L~ 159 (605)
T 1m9s_A 129 -----------------------------------------------HLPQLESLYLGNNKITDI--TVLSRLTKLDTLS 159 (605)
T ss_dssp -----------------------------------------------GCTTCSEEECCSSCCCCC--GGGGSCTTCSEEE
T ss_pred -----------------------------------------------CCCccCEEECCCCccCCc--hhhcccCCCCEEE
Confidence 134678888888887754 5677788888888
Q ss_pred CCCcccCCCCCcCCCCCCCCCEEECCCCcCCccCchhhcCCCCCCEEeccCCcCeec
Q 005038 568 LSHNNLTGSIPSTFSNLKHVESLDLSNNKLNGKIPHQLVELKTLEVFSVAYNNLSGE 624 (717)
Q Consensus 568 Ls~n~l~~~~p~~~~~l~~L~~L~L~~N~i~~~~p~~~~~l~~L~~L~l~~N~l~~~ 624 (717)
|++|.+++..| +..+++|+.|+|++|++++. | .+..+++|+.|++++|++++.
T Consensus 160 Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~i~~l-~-~l~~l~~L~~L~L~~N~l~~~ 212 (605)
T 1m9s_A 160 LEDNQISDIVP--LAGLTKLQNLYLSKNHISDL-R-ALAGLKNLDVLELFSQECLNK 212 (605)
T ss_dssp CCSSCCCCCGG--GTTCTTCCEEECCSSCCCBC-G-GGTTCTTCSEEECCSEEEECC
T ss_pred CcCCcCCCchh--hccCCCCCEEECcCCCCCCC-h-HHccCCCCCEEEccCCcCcCC
Confidence 88888876555 77788888888888888743 3 577788888888888887754
No 115
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.70 E-value=3.2e-17 Score=161.02 Aligned_cols=168 Identities=20% Similarity=0.246 Sum_probs=135.9
Q ss_pred cccEEeccCcccccccCccccCCCCcCCEEeCCCCcCCcccchhhhCCCCCcEEEcCCCccccccchhccCCCCCCEEEc
Q 005038 388 SIKQVHLSKNMLHGQLKRGTFFNCSSLVTLDLSYNRLNGSIPDWVDGLSQLSHLILGHNNLEGEVSVQLCELNQLQLLDL 467 (717)
Q Consensus 388 ~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L 467 (717)
.+..++++++.+.+.. .+..+++|++|++++|.+.. ++ .+..+++|+.|++++|++++..+ +..+++|+.|++
T Consensus 20 ~l~~l~l~~~~i~~~~---~~~~l~~L~~L~l~~n~i~~-l~-~l~~l~~L~~L~L~~N~i~~~~~--l~~l~~L~~L~L 92 (263)
T 1xeu_A 20 NAVKQNLGKQSVTDLV---SQKELSGVQNFNGDNSNIQS-LA-GMQFFTNLKELHLSHNQISDLSP--LKDLTKLEELSV 92 (263)
T ss_dssp HHHHHHHTCSCTTSEE---CHHHHTTCSEEECTTSCCCC-CT-TGGGCTTCCEEECCSSCCCCCGG--GTTCSSCCEEEC
T ss_pred HHHHHHhcCCCccccc---chhhcCcCcEEECcCCCccc-ch-HHhhCCCCCEEECCCCccCCChh--hccCCCCCEEEC
Confidence 3445555555554322 26678899999999999885 44 68889999999999999997655 889999999999
Q ss_pred cCCcCccCCCcccccccccccccCCCCCCcchhhhhhcccccccccccccceEEEeeccceeeeccccccccceeeCCCC
Q 005038 468 SNNNLHGPIPPCFDNTTLHESYSNSSSPDEQFEIFFSIEGHQGFLEKQNHEIFEFTTKNIAYIYQGKVLSLLSGLDLSCN 547 (717)
Q Consensus 468 ~~n~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n 547 (717)
++|++++..+... +.|+.|++++|
T Consensus 93 ~~N~l~~l~~~~~--------------------------------------------------------~~L~~L~L~~N 116 (263)
T 1xeu_A 93 NRNRLKNLNGIPS--------------------------------------------------------ACLSRLFLDNN 116 (263)
T ss_dssp CSSCCSCCTTCCC--------------------------------------------------------SSCCEEECCSS
T ss_pred CCCccCCcCcccc--------------------------------------------------------CcccEEEccCC
Confidence 9999875332110 26999999999
Q ss_pred ccCCCCcccccCCccCCeEeCCCcccCCCCCcCCCCCCCCCEEECCCCcCCccCchhhcCCCCCCEEeccCCcCeec
Q 005038 548 KLIGHIPPQIGNLTRIQTLNLSHNNLTGSIPSTFSNLKHVESLDLSNNKLNGKIPHQLVELKTLEVFSVAYNNLSGE 624 (717)
Q Consensus 548 ~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~N~i~~~~p~~~~~l~~L~~L~l~~N~l~~~ 624 (717)
++++. ..+..+++|++|++++|++++. + .+..+++|++|++++|++++. ..+..+++|+.|++++|++++.
T Consensus 117 ~l~~~--~~l~~l~~L~~L~Ls~N~i~~~-~-~l~~l~~L~~L~L~~N~i~~~--~~l~~l~~L~~L~l~~N~~~~~ 187 (263)
T 1xeu_A 117 ELRDT--DSLIHLKNLEILSIRNNKLKSI-V-MLGFLSKLEVLDLHGNEITNT--GGLTRLKKVNWIDLTGQKCVNE 187 (263)
T ss_dssp CCSBS--GGGTTCTTCCEEECTTSCCCBC-G-GGGGCTTCCEEECTTSCCCBC--TTSTTCCCCCEEEEEEEEEECC
T ss_pred ccCCC--hhhcCcccccEEECCCCcCCCC-h-HHccCCCCCEEECCCCcCcch--HHhccCCCCCEEeCCCCcccCC
Confidence 99864 3689999999999999999965 3 688999999999999999866 6788999999999999999865
No 116
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=99.69 E-value=4.8e-17 Score=165.96 Aligned_cols=287 Identities=14% Similarity=0.103 Sum_probs=142.3
Q ss_pred CCCCCEEEccCCccccccchhhhhCCCCCCEEEccCcccC--ccCcccccCCCCCCeEECcCCcCcccCcccccC-----
Q 005038 242 MKFLQILDLSNNHLTGEIPEHLAVGCVNLQFLALSNNNLQ--GHLFSRNFNLTNLQWLQLEGNRFVGEIPQSLSK----- 314 (717)
Q Consensus 242 l~~L~~L~Ls~n~l~~~~~~~~~~~~~~L~~L~L~~n~i~--~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~----- 314 (717)
+.+++.|.++++ +...-...+...+++|++|||++|++. ...... ++.++.+.+..+. +.+.+|.+
T Consensus 24 ~~~l~~L~l~g~-i~~~~~~~l~~~l~~L~~LdLs~n~i~~~~~~~~~---~~~~~~~~~~~~~---I~~~aF~~~~~~~ 96 (329)
T 3sb4_A 24 ANSITHLTLTGK-LNAEDFRHLRDEFPSLKVLDISNAEIKMYSGKAGT---YPNGKFYIYMANF---VPAYAFSNVVNGV 96 (329)
T ss_dssp HHHCSEEEEEEE-ECHHHHHHHHHSCTTCCEEEEEEEEECCEEESSSS---SGGGCCEEECTTE---ECTTTTEEEETTE
T ss_pred hCceeEEEEecc-ccHHHHHHHHHhhccCeEEecCcceeEEecCcccc---ccccccccccccc---cCHHHhccccccc
Confidence 345566666543 111111122222566777777766665 211111 1223444444442 22344555
Q ss_pred ---CCCCCEEEccCCcCcCcCCcccCCCCCCCEEEccCCcccCCcccccCCCCCCCEEEccCCcCcccCCCccccccccE
Q 005038 315 ---CSSLEGLYLNNNSLLGKIPRWLGNLTRLQYIIMPNNHLEGPIPVEFCQLDSLQILDISDNNISGSLPSCFHPLSIKQ 391 (717)
Q Consensus 315 ---l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~L~~ 391 (717)
+++|+.+++.+ .++...+.+|.++++|+.+++++|.+..+.+.+|.++.++..+....+......
T Consensus 97 ~~g~~~L~~l~L~~-~i~~I~~~aF~~~~~L~~l~l~~n~i~~i~~~aF~~~~~l~~l~~~~~~~~~~~----------- 164 (329)
T 3sb4_A 97 TKGKQTLEKVILSE-KIKNIEDAAFKGCDNLKICQIRKKTAPNLLPEALADSVTAIFIPLGSSDAYRFK----------- 164 (329)
T ss_dssp EEECTTCCC-CBCT-TCCEECTTTTTTCTTCCEEEBCCSSCCEECTTSSCTTTCEEEECTTCTHHHHTS-----------
T ss_pred ccccCCCcEEECCc-cccchhHHHhhcCcccceEEcCCCCccccchhhhcCCCceEEecCcchhhhhcc-----------
Confidence 66677776666 555555556666667777777666666555666666555555544432110000
Q ss_pred EeccCcccccccCccccCCCCcCC-EEeCCCCcCCcccchhh-h---CCCCCcEEEcCCCccccccchhc-cCCCCCCEE
Q 005038 392 VHLSKNMLHGQLKRGTFFNCSSLV-TLDLSYNRLNGSIPDWV-D---GLSQLSHLILGHNNLEGEVSVQL-CELNQLQLL 465 (717)
Q Consensus 392 L~l~~n~~~~~~~~~~~~~~~~L~-~L~L~~n~~~~~~~~~~-~---~l~~L~~L~L~~n~l~~~~~~~l-~~l~~L~~L 465 (717)
..+...+|.++..|+ .+.+.... .++..+ . ...+++.+.+.++-.. .....+ ..+++|+.+
T Consensus 165 ---------~~i~~~~f~~~~~L~~~i~~~~~~---~l~~~~~~~~~~~~~~~~l~~~~~l~~-~~~~~l~~~~~~L~~l 231 (329)
T 3sb4_A 165 ---------NRWEHFAFIEGEPLETTIQVGAMG---KLEDEIMKAGLQPRDINFLTIEGKLDN-ADFKLIRDYMPNLVSL 231 (329)
T ss_dssp ---------TTTTTSCEEESCCCEEEEEECTTC---CHHHHHHHTTCCGGGCSEEEEEECCCH-HHHHHHHHHCTTCCEE
T ss_pred ---------ccccccccccccccceeEEecCCC---cHHHHHhhcccCccccceEEEeeeecH-HHHHHHHHhcCCCeEE
Confidence 012222244444444 33332211 111111 1 1234444444433211 111111 124555555
Q ss_pred EccCCcCccCCCcccccccccccccCCCCCCcchhhhhhcccccccccccccceEEEeeccceeeeccccccccceeeCC
Q 005038 466 DLSNNNLHGPIPPCFDNTTLHESYSNSSSPDEQFEIFFSIEGHQGFLEKQNHEIFEFTTKNIAYIYQGKVLSLLSGLDLS 545 (717)
Q Consensus 466 ~L~~n~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~ 545 (717)
++++|+++.+.+.+|..+. +|+.++|.
T Consensus 232 ~L~~n~i~~I~~~aF~~~~-----------------------------------------------------~L~~l~l~ 258 (329)
T 3sb4_A 232 DISKTNATTIPDFTFAQKK-----------------------------------------------------YLLKIKLP 258 (329)
T ss_dssp ECTTBCCCEECTTTTTTCT-----------------------------------------------------TCCEEECC
T ss_pred ECCCCCcceecHhhhhCCC-----------------------------------------------------CCCEEECC
Confidence 5555555544444444432 45555555
Q ss_pred CCccCCCCcccccCCccCC-eEeCCCcccCCCCCcCCCCCCCCCEEECCCCcCCccCchhhcCCCCCCEEe
Q 005038 546 CNKLIGHIPPQIGNLTRIQ-TLNLSHNNLTGSIPSTFSNLKHVESLDLSNNKLNGKIPHQLVELKTLEVFS 615 (717)
Q Consensus 546 ~n~l~~~~~~~l~~l~~L~-~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~N~i~~~~p~~~~~l~~L~~L~ 615 (717)
+| +..+.+.+|.++++|+ .+++.+ .++.+.+.+|.++++|+.+++++|+++.+.+..|.++++|+.++
T Consensus 259 ~n-i~~I~~~aF~~~~~L~~~l~l~~-~l~~I~~~aF~~c~~L~~l~l~~n~i~~I~~~aF~~~~~L~~ly 327 (329)
T 3sb4_A 259 HN-LKTIGQRVFSNCGRLAGTLELPA-SVTAIEFGAFMGCDNLRYVLATGDKITTLGDELFGNGVPSKLIY 327 (329)
T ss_dssp TT-CCEECTTTTTTCTTCCEEEEECT-TCCEECTTTTTTCTTEEEEEECSSCCCEECTTTTCTTCCCCEEE
T ss_pred cc-cceehHHHhhCChhccEEEEEcc-cceEEchhhhhCCccCCEEEeCCCccCccchhhhcCCcchhhhc
Confidence 55 4445555666777776 777766 56655566677777777777777777666666777777777664
No 117
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.69 E-value=1e-16 Score=149.24 Aligned_cols=87 Identities=25% Similarity=0.405 Sum_probs=41.5
Q ss_pred cceeeCCCCccCCCCcccccCCccCCeEeCCCcccCCCCCcCCCCCCCCCEEECCCCcCCccCchhhcCCCCCCEEeccC
Q 005038 539 LSGLDLSCNKLIGHIPPQIGNLTRIQTLNLSHNNLTGSIPSTFSNLKHVESLDLSNNKLNGKIPHQLVELKTLEVFSVAY 618 (717)
Q Consensus 539 L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~N~i~~~~p~~~~~l~~L~~L~l~~ 618 (717)
|++|+|++|++++..|..|.++++|++|+|++|++++..+..|.++++|++|+|++|++++..|..+..+++|++|++++
T Consensus 56 L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~ 135 (192)
T 1w8a_A 56 LVKLELKRNQLTGIEPNAFEGASHIQELQLGENKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLAS 135 (192)
T ss_dssp CCEEECCSSCCCCBCTTTTTTCTTCCEEECCSCCCCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTT
T ss_pred CCEEECCCCCCCCcCHhHcCCcccCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCCeeCHHHhhcCCCCCEEEeCC
Confidence 44444444444444444444444444555555544444444444445555555555555444444444445555555555
Q ss_pred CcCeecC
Q 005038 619 NNLSGEI 625 (717)
Q Consensus 619 N~l~~~~ 625 (717)
|++.+.+
T Consensus 136 N~l~c~c 142 (192)
T 1w8a_A 136 NPFNCNC 142 (192)
T ss_dssp CCBCCSG
T ss_pred CCccCcC
Confidence 5544443
No 118
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.68 E-value=2e-16 Score=173.16 Aligned_cols=83 Identities=24% Similarity=0.290 Sum_probs=37.6
Q ss_pred cCCCCCCEEEccCCccccccchhhhhCCCCCCEEEccCcccCccCcccccCCCCCCeEECcCCcCcccCcccccCCCCCC
Q 005038 240 GNMKFLQILDLSNNHLTGEIPEHLAVGCVNLQFLALSNNNLQGHLFSRNFNLTNLQWLQLEGNRFVGEIPQSLSKCSSLE 319 (717)
Q Consensus 240 ~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~ 319 (717)
..+++|+.|++++|.+. .++. +..+++|+.|+|++|.+.+..+ +..+++|++|+|++|.+.+. + .+..+++|+
T Consensus 40 ~~L~~L~~L~l~~n~i~-~l~~--l~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~l~~l-~-~l~~l~~L~ 112 (605)
T 1m9s_A 40 NELNSIDQIIANNSDIK-SVQG--IQYLPNVTKLFLNGNKLTDIKP--LTNLKNLGWLFLDENKIKDL-S-SLKDLKKLK 112 (605)
T ss_dssp HHHTTCCCCBCTTCCCC-CCTT--GGGCTTCCEEECTTSCCCCCGG--GGGCTTCCEEECCSSCCCCC-T-TSTTCTTCC
T ss_pred hcCCCCCEEECcCCCCC-CChH--HccCCCCCEEEeeCCCCCCChh--hccCCCCCEEECcCCCCCCC-h-hhccCCCCC
Confidence 34455555555555554 3332 1234555555555555543322 44444455555555444421 1 344444444
Q ss_pred EEEccCCcCc
Q 005038 320 GLYLNNNSLL 329 (717)
Q Consensus 320 ~L~L~~n~~~ 329 (717)
.|++++|.+.
T Consensus 113 ~L~Ls~N~l~ 122 (605)
T 1m9s_A 113 SLSLEHNGIS 122 (605)
T ss_dssp EEECTTSCCC
T ss_pred EEEecCCCCC
Confidence 4444444443
No 119
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=99.67 E-value=2.4e-17 Score=168.19 Aligned_cols=230 Identities=17% Similarity=0.132 Sum_probs=158.0
Q ss_pred cCCccccCC--------CCCCCEEECCCCcccCcCCcccccCCCCCCEEEccCCcccccccccccccCCCccccEEEccC
Q 005038 58 SISSSPLVH--------LTSIEELMLSNNYFQIPISLEPLFNYSRLKIFNAENNEIKAEITESHSLIAPKFQLNTLSLSS 129 (717)
Q Consensus 58 ~i~~~~~~~--------l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~L~~L~l~~ 129 (717)
.||..+|.+ +++|+.+++.+ .++ .++..+|.+|++|+.+++++|.+....... +..+.++..+....
T Consensus 83 ~I~~~aF~~~~~~~~~g~~~L~~l~L~~-~i~-~I~~~aF~~~~~L~~l~l~~n~i~~i~~~a---F~~~~~l~~l~~~~ 157 (329)
T 3sb4_A 83 FVPAYAFSNVVNGVTKGKQTLEKVILSE-KIK-NIEDAAFKGCDNLKICQIRKKTAPNLLPEA---LADSVTAIFIPLGS 157 (329)
T ss_dssp EECTTTTEEEETTEEEECTTCCC-CBCT-TCC-EECTTTTTTCTTCCEEEBCCSSCCEECTTS---SCTTTCEEEECTTC
T ss_pred ccCHHHhcccccccccccCCCcEEECCc-ccc-chhHHHhhcCcccceEEcCCCCccccchhh---hcCCCceEEecCcc
Confidence 456667777 88888888887 565 466677888888888888888777655544 34455666666522
Q ss_pred CC---CCCCCCchhhcCCCCCC-EEEccCCCCcccCChhhhhC---CCCCCEEEccCCcCcccCccCcCCCCCcCEEEcc
Q 005038 130 NY---GDGFIFPKFLYHQHDLE-YVDLSHIKMNGEFPNWLLEN---NTKLETLFLVNDSLAGPFRLPIHSHKRLRQLDVS 202 (717)
Q Consensus 130 ~~---~~~~~~~~~l~~~~~L~-~L~l~~~~~~~~~~~~~~~~---~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~ls 202 (717)
.. .........+..+..|+ .+++.... .++..++.. ..+++.+.+.++-.......-...+++|+.++++
T Consensus 158 ~~~~~~~~~i~~~~f~~~~~L~~~i~~~~~~---~l~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~l~~~~~~L~~l~L~ 234 (329)
T 3sb4_A 158 SDAYRFKNRWEHFAFIEGEPLETTIQVGAMG---KLEDEIMKAGLQPRDINFLTIEGKLDNADFKLIRDYMPNLVSLDIS 234 (329)
T ss_dssp THHHHTSTTTTTSCEEESCCCEEEEEECTTC---CHHHHHHHTTCCGGGCSEEEEEECCCHHHHHHHHHHCTTCCEEECT
T ss_pred hhhhhccccccccccccccccceeEEecCCC---cHHHHHhhcccCccccceEEEeeeecHHHHHHHHHhcCCCeEEECC
Confidence 11 11112234455666666 55554332 344443332 4456666666542221111111236788888888
Q ss_pred CCcCCccCCccccccCCCCcEEECCCCCCCccCCccccCCCCCC-EEEccCCccccccchhhhhCCCCCCEEEccCcccC
Q 005038 203 NNNIRGHIPVKIGDVLPSLYVFNNSMNALDGSIPSSFGNMKFLQ-ILDLSNNHLTGEIPEHLAVGCVNLQFLALSNNNLQ 281 (717)
Q Consensus 203 ~n~i~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~-~L~Ls~n~l~~~~~~~~~~~~~~L~~L~L~~n~i~ 281 (717)
+|.++ .++...+..+++|+.+++..| +....+.+|.++++|+ .+++.+ .++ .++...|.+|++|+.++++.|.++
T Consensus 235 ~n~i~-~I~~~aF~~~~~L~~l~l~~n-i~~I~~~aF~~~~~L~~~l~l~~-~l~-~I~~~aF~~c~~L~~l~l~~n~i~ 310 (329)
T 3sb4_A 235 KTNAT-TIPDFTFAQKKYLLKIKLPHN-LKTIGQRVFSNCGRLAGTLELPA-SVT-AIEFGAFMGCDNLRYVLATGDKIT 310 (329)
T ss_dssp TBCCC-EECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEEEECT-TCC-EECTTTTTTCTTEEEEEECSSCCC
T ss_pred CCCcc-eecHhhhhCCCCCCEEECCcc-cceehHHHhhCChhccEEEEEcc-cce-EEchhhhhCCccCCEEEeCCCccC
Confidence 88887 788888888888888888887 6667777899999999 999988 677 788888888999999999999998
Q ss_pred ccCcccccCCCCCCeEEC
Q 005038 282 GHLFSRNFNLTNLQWLQL 299 (717)
Q Consensus 282 ~~~~~~~~~l~~L~~L~L 299 (717)
.+...+|.++++|+.++.
T Consensus 311 ~I~~~aF~~~~~L~~ly~ 328 (329)
T 3sb4_A 311 TLGDELFGNGVPSKLIYK 328 (329)
T ss_dssp EECTTTTCTTCCCCEEEC
T ss_pred ccchhhhcCCcchhhhcc
Confidence 888889999999998864
No 120
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=99.67 E-value=3.5e-15 Score=156.23 Aligned_cols=315 Identities=16% Similarity=0.125 Sum_probs=147.7
Q ss_pred eeCcccccCCCCCCeeeCCCCCCCCCcchhccCCCCCCEEeCCCCCCcccCCccccCCCCCCCEEECCCCcccCcCCccc
Q 005038 9 VVRSQGLCSLVHLQELYIASNDLRGSLPWCMANMTSLRILDVSSNQLTGSISSSPLVHLTSIEELMLSNNYFQIPISLEP 88 (717)
Q Consensus 9 ~i~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~i~~~~~~~l~~L~~L~L~~n~~~~~~~~~~ 88 (717)
+|...||.++.+|+++.++. .++.+...+|.+|++|+.++++.+ ++ .|+..+|.++++|+.+.+..+- . .+...+
T Consensus 61 sIg~~AF~~c~~L~~i~lp~-~i~~I~~~aF~~c~~L~~i~lp~~-l~-~I~~~aF~~c~~L~~i~~p~~l-~-~i~~~a 135 (394)
T 4fs7_A 61 SIGYAAFQGCRKVTEIKIPS-TVREIGEFAFENCSKLEIINIPDS-VK-MIGRCTFSGCYALKSILLPLML-K-SIGVEA 135 (394)
T ss_dssp EECTTTTTTCTTEEEEECCT-TCCEECTTTTTTCTTCCEECCCTT-CC-EECTTTTTTCTTCCCCCCCTTC-C-EECTTT
T ss_pred EhHHHHhhCCCCceEEEeCC-CccCcchhHhhCCCCCcEEEeCCC-ce-EccchhhcccccchhhcccCce-e-eeccee
Confidence 45556677777777777763 355455566777777777777654 43 5665566666666666655432 1 233334
Q ss_pred ccCCCCCCEEEccCCcccccccccccccCCCccccEEEccCCCCCCCCCchhhcCCCCCCEEEccCCCCcccCChhhhhC
Q 005038 89 LFNYSRLKIFNAENNEIKAEITESHSLIAPKFQLNTLSLSSNYGDGFIFPKFLYHQHDLEYVDLSHIKMNGEFPNWLLEN 168 (717)
Q Consensus 89 ~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~ 168 (717)
|.++..++........ . .-...|..+++|+.+.+..+.. .++...+.+
T Consensus 136 F~~~~~~~~~~~~~~~--~----------------------------i~~~aF~~c~~L~~i~l~~~~~--~I~~~~F~~ 183 (394)
T 4fs7_A 136 FKGCDFKEITIPEGVT--V----------------------------IGDEAFATCESLEYVSLPDSME--TLHNGLFSG 183 (394)
T ss_dssp TTTCCCSEEECCTTCC--E----------------------------ECTTTTTTCTTCCEEECCTTCC--EECTTTTTT
T ss_pred eecccccccccCcccc--c----------------------------cchhhhcccCCCcEEecCCccc--eeccccccC
Confidence 5444333222211111 0 0112344444444444443221 233333444
Q ss_pred CCCCCEEEccCCcCcccCccCcCCCCCcCEEEccCCcCCccCCccccccCCCCcEEECCCCCCCccCCccccCCCCCCEE
Q 005038 169 NTKLETLFLVNDSLAGPFRLPIHSHKRLRQLDVSNNNIRGHIPVKIGDVLPSLYVFNNSMNALDGSIPSSFGNMKFLQIL 248 (717)
Q Consensus 169 ~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~ls~n~i~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L 248 (717)
+.+|+.+.+..+ +.......+..+..|+.+.+..+... +....+. ...|+.+.+... +.......+..+..++.+
T Consensus 184 c~~L~~i~l~~~-~~~I~~~~F~~~~~L~~i~~~~~~~~--i~~~~~~-~~~l~~i~ip~~-~~~i~~~~f~~~~~l~~~ 258 (394)
T 4fs7_A 184 CGKLKSIKLPRN-LKIIRDYCFAECILLENMEFPNSLYY--LGDFALS-KTGVKNIIIPDS-FTELGKSVFYGCTDLESI 258 (394)
T ss_dssp CTTCCBCCCCTT-CCEECTTTTTTCTTCCBCCCCTTCCE--ECTTTTT-TCCCCEEEECTT-CCEECSSTTTTCSSCCEE
T ss_pred CCCceEEEcCCC-ceEeCchhhccccccceeecCCCceE--eehhhcc-cCCCceEEECCC-ceecccccccccccceeE
Confidence 455555544433 22222334444445554444433221 1111111 234444444322 121223344555555555
Q ss_pred EccCCccccccchhhhhCCCCCCEEEccCcccCccCcccccCCCCCCeEECcCCcCcccCcccccCCCCCCEEEccCCcC
Q 005038 249 DLSNNHLTGEIPEHLAVGCVNLQFLALSNNNLQGHLFSRNFNLTNLQWLQLEGNRFVGEIPQSLSKCSSLEGLYLNNNSL 328 (717)
Q Consensus 249 ~Ls~n~l~~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~~ 328 (717)
.+..+.. .+....+..+..++.+......+. ...|..+.+|+.+.+..+ +..+...+|.++.+|+.+++.++ +
T Consensus 259 ~~~~~~~--~i~~~~F~~~~~l~~~~~~~~~i~---~~~F~~~~~L~~i~l~~~-i~~I~~~aF~~c~~L~~i~lp~~-v 331 (394)
T 4fs7_A 259 SIQNNKL--RIGGSLFYNCSGLKKVIYGSVIVP---EKTFYGCSSLTEVKLLDS-VKFIGEEAFESCTSLVSIDLPYL-V 331 (394)
T ss_dssp EECCTTC--EECSCTTTTCTTCCEEEECSSEEC---TTTTTTCTTCCEEEECTT-CCEECTTTTTTCTTCCEECCCTT-C
T ss_pred EcCCCcc--eeeccccccccccceeccCceeec---cccccccccccccccccc-cceechhhhcCCCCCCEEEeCCc-c
Confidence 5554422 233344444555555555443322 234445555555555443 33344445555555555555432 3
Q ss_pred cCcCCcccCCCCCCCEEEccCCcccCCcccccCCCCCCCEEEccC
Q 005038 329 LGKIPRWLGNLTRLQYIIMPNNHLEGPIPVEFCQLDSLQILDISD 373 (717)
Q Consensus 329 ~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~ 373 (717)
+.....+|.++++|+.+.+..+ ++.+...+|.++++|+.+++..
T Consensus 332 ~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~C~~L~~i~lp~ 375 (394)
T 4fs7_A 332 EEIGKRSFRGCTSLSNINFPLS-LRKIGANAFQGCINLKKVELPK 375 (394)
T ss_dssp CEECTTTTTTCTTCCEECCCTT-CCEECTTTBTTCTTCCEEEEEG
T ss_pred cEEhHHhccCCCCCCEEEECcc-ccEehHHHhhCCCCCCEEEECC
Confidence 3334445555556666655544 3334445555566666665543
No 121
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.66 E-value=4.5e-16 Score=145.81 Aligned_cols=149 Identities=16% Similarity=0.159 Sum_probs=90.9
Q ss_pred CCcEEECCCCCCCccCCccccCCCCCCEEEccCCccccccchhhhhCCCCCCEEEccCcccCccCcccccCCCCCCeEEC
Q 005038 220 SLYVFNNSMNALDGSIPSSFGNMKFLQILDLSNNHLTGEIPEHLAVGCVNLQFLALSNNNLQGHLFSRNFNLTNLQWLQL 299 (717)
Q Consensus 220 ~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L 299 (717)
+|+.|++++|.+. .+| .+..+++|++|++++|.++ .++ . +..+++|++|++++|.+++..+..+..+++|++|++
T Consensus 45 ~L~~L~l~~n~i~-~l~-~l~~l~~L~~L~l~~n~~~-~~~-~-l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L 119 (197)
T 4ezg_A 45 SLTYITLANINVT-DLT-GIEYAHNIKDLTINNIHAT-NYN-P-ISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLDI 119 (197)
T ss_dssp TCCEEEEESSCCS-CCT-TGGGCTTCSEEEEESCCCS-CCG-G-GTTCTTCCEEEEECTTCBGGGSCCCTTCTTCCEEEC
T ss_pred CccEEeccCCCcc-ChH-HHhcCCCCCEEEccCCCCC-cch-h-hhcCCCCCEEEeECCccCcccChhhcCCCCCCEEEe
Confidence 4444444444444 223 3555666666666666554 332 2 234666777777777666656666667777777777
Q ss_pred cCCcCcccCcccccCCCCCCEEEccCCc-CcCcCCcccCCCCCCCEEEccCCcccCCcccccCCCCCCCEEEccCCcCc
Q 005038 300 EGNRFVGEIPQSLSKCSSLEGLYLNNNS-LLGKIPRWLGNLTRLQYIIMPNNHLEGPIPVEFCQLDSLQILDISDNNIS 377 (717)
Q Consensus 300 ~~n~l~~~~~~~~~~l~~L~~L~L~~n~-~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~ 377 (717)
++|.+.+..+..+..+++|++|++++|. +. .++ .+..+++|+.|++++|.+++.. .+..+++|++|++++|++.
T Consensus 120 s~n~i~~~~~~~l~~l~~L~~L~L~~n~~i~-~~~-~l~~l~~L~~L~l~~n~i~~~~--~l~~l~~L~~L~l~~N~i~ 194 (197)
T 4ezg_A 120 SHSAHDDSILTKINTLPKVNSIDLSYNGAIT-DIM-PLKTLPELKSLNIQFDGVHDYR--GIEDFPKLNQLYAFSQTIG 194 (197)
T ss_dssp CSSBCBGGGHHHHTTCSSCCEEECCSCTBCC-CCG-GGGGCSSCCEEECTTBCCCCCT--TGGGCSSCCEEEECBC---
T ss_pred cCCccCcHhHHHHhhCCCCCEEEccCCCCcc-ccH-hhcCCCCCCEEECCCCCCcChH--HhccCCCCCEEEeeCcccC
Confidence 7777766566667777777777777776 44 333 4666777777777777776432 5666677777777777654
No 122
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=99.65 E-value=6.1e-15 Score=153.32 Aligned_cols=266 Identities=11% Similarity=0.111 Sum_probs=168.3
Q ss_pred CCCCCEEEccCcccCccCcccccCCCCCCeEECcCCcCcccCcccccCCCCCCEEEccCCcCcCcCCcccCCCCCCCEEE
Q 005038 267 CVNLQFLALSNNNLQGHLFSRNFNLTNLQWLQLEGNRFVGEIPQSLSKCSSLEGLYLNNNSLLGKIPRWLGNLTRLQYII 346 (717)
Q Consensus 267 ~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~ 346 (717)
+..++.+.+.. .++.+...+|.++ +|+.+.+..+ ++.+...+|.++ +|+.+.+.+ .+....+..|.++++|+.++
T Consensus 112 ~~~l~~i~ip~-~i~~I~~~aF~~~-~L~~i~l~~~-i~~I~~~aF~~~-~L~~i~lp~-~l~~I~~~aF~~c~~L~~l~ 186 (401)
T 4fdw_A 112 LKGYNEIILPN-SVKSIPKDAFRNS-QIAKVVLNEG-LKSIGDMAFFNS-TVQEIVFPS-TLEQLKEDIFYYCYNLKKAD 186 (401)
T ss_dssp CSSCSEEECCT-TCCEECTTTTTTC-CCSEEECCTT-CCEECTTTTTTC-CCCEEECCT-TCCEECSSTTTTCTTCCEEE
T ss_pred cCCccEEEECC-ccCEehHhhcccC-CccEEEeCCC-ccEECHHhcCCC-CceEEEeCC-CccEehHHHhhCcccCCeee
Confidence 45566666653 3444445555553 5666666554 444444555553 466666554 34434444555555555555
Q ss_pred ccCCcccCCcccccCCCCCCCEEEccCCcCcccCCCccccccccEEeccCcccccccCccccCCCCcCCEEeCCCCcCCc
Q 005038 347 MPNNHLEGPIPVEFCQLDSLQILDISDNNISGSLPSCFHPLSIKQVHLSKNMLHGQLKRGTFFNCSSLVTLDLSYNRLNG 426 (717)
Q Consensus 347 l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~L~~n~~~~ 426 (717)
+.+|.++.+....|. ..+|+.+.+. .+ + ..+...+|.+|++|+.+++..+ ++.
T Consensus 187 l~~n~l~~I~~~aF~-~~~L~~l~lp-----------------------~~-l-~~I~~~aF~~~~~L~~l~l~~~-l~~ 239 (401)
T 4fdw_A 187 LSKTKITKLPASTFV-YAGIEEVLLP-----------------------VT-L-KEIGSQAFLKTSQLKTIEIPEN-VST 239 (401)
T ss_dssp CTTSCCSEECTTTTT-TCCCSEEECC-----------------------TT-C-CEECTTTTTTCTTCCCEECCTT-CCE
T ss_pred cCCCcceEechhhEe-ecccCEEEeC-----------------------Cc-h-heehhhHhhCCCCCCEEecCCC-ccC
Confidence 555555443333443 3445555444 22 1 3556667888888888888874 555
Q ss_pred ccchhhhCCCCCcEEEcCCCccccccchhccCCCCCCEEEccCCcCc-----cCCCcccccccccccccCCCCCCcchhh
Q 005038 427 SIPDWVDGLSQLSHLILGHNNLEGEVSVQLCELNQLQLLDLSNNNLH-----GPIPPCFDNTTLHESYSNSSSPDEQFEI 501 (717)
Q Consensus 427 ~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 501 (717)
....+|.+ .+|+.+.+ .+.++......|.++++|+.+++.+|.+. .+.+.+|..
T Consensus 240 I~~~aF~~-~~L~~i~l-p~~i~~I~~~aF~~c~~L~~l~l~~~~~~~~~~~~I~~~aF~~------------------- 298 (401)
T 4fdw_A 240 IGQEAFRE-SGITTVKL-PNGVTNIASRAFYYCPELAEVTTYGSTFNDDPEAMIHPYCLEG------------------- 298 (401)
T ss_dssp ECTTTTTT-CCCSEEEE-ETTCCEECTTTTTTCTTCCEEEEESSCCCCCTTCEECTTTTTT-------------------
T ss_pred cccccccc-CCccEEEe-CCCccEEChhHhhCCCCCCEEEeCCccccCCcccEECHHHhhC-------------------
Confidence 66667777 78888888 45677677788888889999888877654 233333333
Q ss_pred hhhcccccccccccccceEEEeeccceeeeccccccccceeeCCCCccCCCCcccccCCccCCeEeCCCcccCCCCCcCC
Q 005038 502 FFSIEGHQGFLEKQNHEIFEFTTKNIAYIYQGKVLSLLSGLDLSCNKLIGHIPPQIGNLTRIQTLNLSHNNLTGSIPSTF 581 (717)
Q Consensus 502 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~ 581 (717)
+++|+.+++.. .++.+...+|.++++|+.++|..+ ++.+.+.+|
T Consensus 299 ----------------------------------c~~L~~l~l~~-~i~~I~~~aF~~c~~L~~l~lp~~-l~~I~~~aF 342 (401)
T 4fdw_A 299 ----------------------------------CPKLARFEIPE-SIRILGQGLLGGNRKVTQLTIPAN-VTQINFSAF 342 (401)
T ss_dssp ----------------------------------CTTCCEECCCT-TCCEECTTTTTTCCSCCEEEECTT-CCEECTTSS
T ss_pred ----------------------------------CccCCeEEeCC-ceEEEhhhhhcCCCCccEEEECcc-ccEEcHHhC
Confidence 23677777773 466566677888888888888654 665666778
Q ss_pred CCCCCCCEEECCCCcCCccCchhhcCCC-CCCEEeccCCcCe
Q 005038 582 SNLKHVESLDLSNNKLNGKIPHQLVELK-TLEVFSVAYNNLS 622 (717)
Q Consensus 582 ~~l~~L~~L~L~~N~i~~~~p~~~~~l~-~L~~L~l~~N~l~ 622 (717)
.++ +|+.+++++|.+....+..|..++ .++.|.+..+.+.
T Consensus 343 ~~~-~L~~l~l~~n~~~~l~~~~F~~~~~~l~~l~vp~~~~~ 383 (401)
T 4fdw_A 343 NNT-GIKEVKVEGTTPPQVFEKVWYGFPDDITVIRVPAESVE 383 (401)
T ss_dssp SSS-CCCEEEECCSSCCBCCCSSCCCSCTTCCEEEECGGGHH
T ss_pred CCC-CCCEEEEcCCCCcccccccccCCCCCccEEEeCHHHHH
Confidence 888 888888888887766666677664 6777777766543
No 123
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=99.64 E-value=1.4e-14 Score=150.64 Aligned_cols=264 Identities=11% Similarity=0.078 Sum_probs=154.6
Q ss_pred CCCCCEEEccCCcCcccCccCcCCCCCcCEEEccCCcCCccCCccccccCCCCcEEECCCCCCCccCCccccCCCCCCEE
Q 005038 169 NTKLETLFLVNDSLAGPFRLPIHSHKRLRQLDVSNNNIRGHIPVKIGDVLPSLYVFNNSMNALDGSIPSSFGNMKFLQIL 248 (717)
Q Consensus 169 ~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~ls~n~i~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L 248 (717)
+..++.+.+.+ .++......|.++ +|+.+.+..+ ++ .++...+..+ +|+.+.+.. .+....+.+|.++++|+.+
T Consensus 112 ~~~l~~i~ip~-~i~~I~~~aF~~~-~L~~i~l~~~-i~-~I~~~aF~~~-~L~~i~lp~-~l~~I~~~aF~~c~~L~~l 185 (401)
T 4fdw_A 112 LKGYNEIILPN-SVKSIPKDAFRNS-QIAKVVLNEG-LK-SIGDMAFFNS-TVQEIVFPS-TLEQLKEDIFYYCYNLKKA 185 (401)
T ss_dssp CSSCSEEECCT-TCCEECTTTTTTC-CCSEEECCTT-CC-EECTTTTTTC-CCCEEECCT-TCCEECSSTTTTCTTCCEE
T ss_pred cCCccEEEECC-ccCEehHhhcccC-CccEEEeCCC-cc-EECHHhcCCC-CceEEEeCC-CccEehHHHhhCcccCCee
Confidence 34555555543 2333334445554 5666666554 44 4444444432 566666654 4444555667777777777
Q ss_pred EccCCccccccchhhhhCCCCCCEEEccCcccCccCcccccCCCCCCeEECcCCcCcccCcccccCCCCCCEEEccCCcC
Q 005038 249 DLSNNHLTGEIPEHLAVGCVNLQFLALSNNNLQGHLFSRNFNLTNLQWLQLEGNRFVGEIPQSLSKCSSLEGLYLNNNSL 328 (717)
Q Consensus 249 ~Ls~n~l~~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~~ 328 (717)
++++|.++ .++...|. +.+|+.+.+..+ ++.+...+|.++++|+.+++..+ ++.+...+|.. .+|+.+.+.+ .+
T Consensus 186 ~l~~n~l~-~I~~~aF~-~~~L~~l~lp~~-l~~I~~~aF~~~~~L~~l~l~~~-l~~I~~~aF~~-~~L~~i~lp~-~i 259 (401)
T 4fdw_A 186 DLSKTKIT-KLPASTFV-YAGIEEVLLPVT-LKEIGSQAFLKTSQLKTIEIPEN-VSTIGQEAFRE-SGITTVKLPN-GV 259 (401)
T ss_dssp ECTTSCCS-EECTTTTT-TCCCSEEECCTT-CCEECTTTTTTCTTCCCEECCTT-CCEECTTTTTT-CCCSEEEEET-TC
T ss_pred ecCCCcce-EechhhEe-ecccCEEEeCCc-hheehhhHhhCCCCCCEEecCCC-ccCcccccccc-CCccEEEeCC-Cc
Confidence 77777776 66666665 567777777633 65566667777777777777654 44455555655 5677776633 34
Q ss_pred cCcCCcccCCCCCCCEEEccCCccc-----CCcccccCCCCCCCEEEccCCcCcccCCCccccccccEEeccCccccccc
Q 005038 329 LGKIPRWLGNLTRLQYIIMPNNHLE-----GPIPVEFCQLDSLQILDISDNNISGSLPSCFHPLSIKQVHLSKNMLHGQL 403 (717)
Q Consensus 329 ~~~~~~~~~~l~~L~~L~l~~n~~~-----~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~L~~L~l~~n~~~~~~ 403 (717)
.......|.++++|+.+.+.++.+. .+.+.+|.++++|+.+++.. .+. .+
T Consensus 260 ~~I~~~aF~~c~~L~~l~l~~~~~~~~~~~~I~~~aF~~c~~L~~l~l~~-~i~------------------------~I 314 (401)
T 4fdw_A 260 TNIASRAFYYCPELAEVTTYGSTFNDDPEAMIHPYCLEGCPKLARFEIPE-SIR------------------------IL 314 (401)
T ss_dssp CEECTTTTTTCTTCCEEEEESSCCCCCTTCEECTTTTTTCTTCCEECCCT-TCC------------------------EE
T ss_pred cEEChhHhhCCCCCCEEEeCCccccCCcccEECHHHhhCCccCCeEEeCC-ceE------------------------EE
Confidence 4444556666666666666665543 23344555566666655542 222 34
Q ss_pred CccccCCCCcCCEEeCCCCcCCcccchhhhCCCCCcEEEcCCCccccccchhccCCC-CCCEEEccCCc
Q 005038 404 KRGTFFNCSSLVTLDLSYNRLNGSIPDWVDGLSQLSHLILGHNNLEGEVSVQLCELN-QLQLLDLSNNN 471 (717)
Q Consensus 404 ~~~~~~~~~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~-~L~~L~L~~n~ 471 (717)
...+|.+|++|+.+++..+ ++.....+|.++ +|+.+++.+|.+.......|.+++ +++.|.+..+.
T Consensus 315 ~~~aF~~c~~L~~l~lp~~-l~~I~~~aF~~~-~L~~l~l~~n~~~~l~~~~F~~~~~~l~~l~vp~~~ 381 (401)
T 4fdw_A 315 GQGLLGGNRKVTQLTIPAN-VTQINFSAFNNT-GIKEVKVEGTTPPQVFEKVWYGFPDDITVIRVPAES 381 (401)
T ss_dssp CTTTTTTCCSCCEEEECTT-CCEECTTSSSSS-CCCEEEECCSSCCBCCCSSCCCSCTTCCEEEECGGG
T ss_pred hhhhhcCCCCccEEEECcc-ccEEcHHhCCCC-CCCEEEEcCCCCcccccccccCCCCCccEEEeCHHH
Confidence 4455666677777777543 444555666666 677777777666655555566653 56666665544
No 124
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.64 E-value=5.2e-16 Score=152.30 Aligned_cols=169 Identities=19% Similarity=0.244 Sum_probs=111.8
Q ss_pred CCCEEEccCcccCccCcccccCCCCCCeEECcCCcCcccCcccccCCCCCCEEEccCCcCcCcCCcccCCCCCCCEEEcc
Q 005038 269 NLQFLALSNNNLQGHLFSRNFNLTNLQWLQLEGNRFVGEIPQSLSKCSSLEGLYLNNNSLLGKIPRWLGNLTRLQYIIMP 348 (717)
Q Consensus 269 ~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~l~ 348 (717)
++..++++++.+++.. .+..+++|++|++++|.+.. ++ .+..+++|++|++++|.+.+..+ +..+++|+.|+++
T Consensus 20 ~l~~l~l~~~~i~~~~--~~~~l~~L~~L~l~~n~i~~-l~-~l~~l~~L~~L~L~~N~i~~~~~--l~~l~~L~~L~L~ 93 (263)
T 1xeu_A 20 NAVKQNLGKQSVTDLV--SQKELSGVQNFNGDNSNIQS-LA-GMQFFTNLKELHLSHNQISDLSP--LKDLTKLEELSVN 93 (263)
T ss_dssp HHHHHHHTCSCTTSEE--CHHHHTTCSEEECTTSCCCC-CT-TGGGCTTCCEEECCSSCCCCCGG--GTTCSSCCEEECC
T ss_pred HHHHHHhcCCCccccc--chhhcCcCcEEECcCCCccc-ch-HHhhCCCCCEEECCCCccCCChh--hccCCCCCEEECC
Confidence 4555566666665432 45566666777776666653 23 45666666666666666654332 5566666666666
Q ss_pred CCcccCCcccccCCCCCCCEEEccCCcCcccCCCccccccccEEeccCcccccccCccccCCCCcCCEEeCCCCcCCccc
Q 005038 349 NNHLEGPIPVEFCQLDSLQILDISDNNISGSLPSCFHPLSIKQVHLSKNMLHGQLKRGTFFNCSSLVTLDLSYNRLNGSI 428 (717)
Q Consensus 349 ~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~L~~n~~~~~~ 428 (717)
+|.+++..+ +.. ++|++|++++|.++ + ++ .+..+++|++|++++|++++.
T Consensus 94 ~N~l~~l~~--~~~-~~L~~L~L~~N~l~-----------------------~-~~--~l~~l~~L~~L~Ls~N~i~~~- 143 (263)
T 1xeu_A 94 RNRLKNLNG--IPS-ACLSRLFLDNNELR-----------------------D-TD--SLIHLKNLEILSIRNNKLKSI- 143 (263)
T ss_dssp SSCCSCCTT--CCC-SSCCEEECCSSCCS-----------------------B-SG--GGTTCTTCCEEECTTSCCCBC-
T ss_pred CCccCCcCc--ccc-CcccEEEccCCccC-----------------------C-Ch--hhcCcccccEEECCCCcCCCC-
Confidence 666654321 222 55555555555554 2 21 277788999999999998864
Q ss_pred chhhhCCCCCcEEEcCCCccccccchhccCCCCCCEEEccCCcCccCC
Q 005038 429 PDWVDGLSQLSHLILGHNNLEGEVSVQLCELNQLQLLDLSNNNLHGPI 476 (717)
Q Consensus 429 ~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~ 476 (717)
+ .+..+++|+.|++++|++++. ..+..+++|+.|++++|++.+..
T Consensus 144 ~-~l~~l~~L~~L~L~~N~i~~~--~~l~~l~~L~~L~l~~N~~~~~~ 188 (263)
T 1xeu_A 144 V-MLGFLSKLEVLDLHGNEITNT--GGLTRLKKVNWIDLTGQKCVNEP 188 (263)
T ss_dssp G-GGGGCTTCCEEECTTSCCCBC--TTSTTCCCCCEEEEEEEEEECCC
T ss_pred h-HHccCCCCCEEECCCCcCcch--HHhccCCCCCEEeCCCCcccCCc
Confidence 3 588889999999999999866 66888899999999999887653
No 125
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.62 E-value=2.5e-18 Score=187.19 Aligned_cols=87 Identities=31% Similarity=0.428 Sum_probs=54.3
Q ss_pred ccceeeCCCCccCCCCcccccCCccCCeEeCCCcccCCCCCcCCCCCCCCCEEECCCCcCCccC-chhhcCCCCCCEEec
Q 005038 538 LLSGLDLSCNKLIGHIPPQIGNLTRIQTLNLSHNNLTGSIPSTFSNLKHVESLDLSNNKLNGKI-PHQLVELKTLEVFSV 616 (717)
Q Consensus 538 ~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~N~i~~~~-p~~~~~l~~L~~L~l 616 (717)
.|+.|+|++|+++ .+|..++.+++|+.|+|++|.+++ +| .++.+++|++|+|++|++++.. |..+..+++|+.|++
T Consensus 464 ~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~~-lp-~l~~l~~L~~L~Ls~N~l~~~~~p~~l~~l~~L~~L~L 540 (567)
T 1dce_A 464 LVTHLDLSHNRLR-ALPPALAALRCLEVLQASDNALEN-VD-GVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNL 540 (567)
T ss_dssp TCCEEECCSSCCC-CCCGGGGGCTTCCEEECCSSCCCC-CG-GGTTCSSCCEEECCSSCCCSSSTTGGGGGCTTCCEEEC
T ss_pred cCcEeecCccccc-ccchhhhcCCCCCEEECCCCCCCC-Cc-ccCCCCCCcEEECCCCCCCCCCCcHHHhcCCCCCEEEe
Confidence 5666666666666 455566666666666666666664 44 5666666666666666666554 666666666666666
Q ss_pred cCCcCeecCCC
Q 005038 617 AYNNLSGEIPE 627 (717)
Q Consensus 617 ~~N~l~~~~p~ 627 (717)
++|++++..|.
T Consensus 541 ~~N~l~~~~~~ 551 (567)
T 1dce_A 541 QGNSLCQEEGI 551 (567)
T ss_dssp TTSGGGGSSSC
T ss_pred cCCcCCCCccH
Confidence 66666655443
No 126
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.62 E-value=2e-18 Score=188.02 Aligned_cols=77 Identities=25% Similarity=0.217 Sum_probs=52.7
Q ss_pred ccceeeCCCCccCCCCcccccCCccCCeEeCCCcccCCCC-CcCCCCCCCCCEEECCCCcCCccCch---hhcCCCCCCE
Q 005038 538 LLSGLDLSCNKLIGHIPPQIGNLTRIQTLNLSHNNLTGSI-PSTFSNLKHVESLDLSNNKLNGKIPH---QLVELKTLEV 613 (717)
Q Consensus 538 ~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~-p~~~~~l~~L~~L~L~~N~i~~~~p~---~~~~l~~L~~ 613 (717)
+|+.|+|++|++++ +| .++.+++|++|+|++|++++.. |..|+.+++|+.|+|++|++++..|. .+..+++|+.
T Consensus 487 ~L~~L~Ls~N~l~~-lp-~l~~l~~L~~L~Ls~N~l~~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~~~l~~~lp~L~~ 564 (567)
T 1dce_A 487 CLEVLQASDNALEN-VD-GVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQERLAEMLPSVSS 564 (567)
T ss_dssp TCCEEECCSSCCCC-CG-GGTTCSSCCEEECCSSCCCSSSTTGGGGGCTTCCEEECTTSGGGGSSSCTTHHHHHCTTCSE
T ss_pred CCCEEECCCCCCCC-Cc-ccCCCCCCcEEECCCCCCCCCCCcHHHhcCCCCCEEEecCCcCCCCccHHHHHHHHCcccCc
Confidence 56666666666664 45 6777777777777777777665 77777777888888888877755442 2334777777
Q ss_pred Eec
Q 005038 614 FSV 616 (717)
Q Consensus 614 L~l 616 (717)
|++
T Consensus 565 L~l 567 (567)
T 1dce_A 565 ILT 567 (567)
T ss_dssp EEC
T ss_pred cCC
Confidence 764
No 127
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=99.62 E-value=1.5e-14 Score=151.43 Aligned_cols=217 Identities=17% Similarity=0.197 Sum_probs=96.7
Q ss_pred cccCCCCCCEEEccCCccccccchhhhhCCCCCCEEEccCcccCccCcccccCCCCCCeEECcCCcCcccCcccccCCCC
Q 005038 238 SFGNMKFLQILDLSNNHLTGEIPEHLAVGCVNLQFLALSNNNLQGHLFSRNFNLTNLQWLQLEGNRFVGEIPQSLSKCSS 317 (717)
Q Consensus 238 ~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~ 317 (717)
+|.++++|+.+++..+ ++ .++...+.++.+|+.+.+..+ +......+|.++..++...... .......+|..+++
T Consensus 89 aF~~c~~L~~i~lp~~-l~-~I~~~aF~~c~~L~~i~~p~~-l~~i~~~aF~~~~~~~~~~~~~--~~~i~~~aF~~c~~ 163 (394)
T 4fs7_A 89 AFENCSKLEIINIPDS-VK-MIGRCTFSGCYALKSILLPLM-LKSIGVEAFKGCDFKEITIPEG--VTVIGDEAFATCES 163 (394)
T ss_dssp TTTTCTTCCEECCCTT-CC-EECTTTTTTCTTCCCCCCCTT-CCEECTTTTTTCCCSEEECCTT--CCEECTTTTTTCTT
T ss_pred HhhCCCCCcEEEeCCC-ce-EccchhhcccccchhhcccCc-eeeecceeeecccccccccCcc--ccccchhhhcccCC
Confidence 3444444444444432 33 344444444555554444322 2223333444433222221111 11123345555666
Q ss_pred CCEEEccCCcCcCcCCcccCCCCCCCEEEccCCcccCCcccccCCCCCCCEEEccCCcCcccCCCccccccccEEeccCc
Q 005038 318 LEGLYLNNNSLLGKIPRWLGNLTRLQYIIMPNNHLEGPIPVEFCQLDSLQILDISDNNISGSLPSCFHPLSIKQVHLSKN 397 (717)
Q Consensus 318 L~~L~L~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~L~~L~l~~n 397 (717)
|+.+.+.++. .......|.++.+|+.+.+..+ ++.+...+|.++..|+.+.+..+... .....+....++.+.+...
T Consensus 164 L~~i~l~~~~-~~I~~~~F~~c~~L~~i~l~~~-~~~I~~~~F~~~~~L~~i~~~~~~~~-i~~~~~~~~~l~~i~ip~~ 240 (394)
T 4fs7_A 164 LEYVSLPDSM-ETLHNGLFSGCGKLKSIKLPRN-LKIIRDYCFAECILLENMEFPNSLYY-LGDFALSKTGVKNIIIPDS 240 (394)
T ss_dssp CCEEECCTTC-CEECTTTTTTCTTCCBCCCCTT-CCEECTTTTTTCTTCCBCCCCTTCCE-ECTTTTTTCCCCEEEECTT
T ss_pred CcEEecCCcc-ceeccccccCCCCceEEEcCCC-ceEeCchhhccccccceeecCCCceE-eehhhcccCCCceEEECCC
Confidence 6666665432 2233445555666666666544 33234445556666665555443221 1222223334444444322
Q ss_pred ccccccCccccCCCCcCCEEeCCCCcCCcccchhhhCCCCCcEEEcCCCccccccchhccCCCCCCEEEcc
Q 005038 398 MLHGQLKRGTFFNCSSLVTLDLSYNRLNGSIPDWVDGLSQLSHLILGHNNLEGEVSVQLCELNQLQLLDLS 468 (717)
Q Consensus 398 ~~~~~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~ 468 (717)
. ..+...+|..+..++.+.+..+... .....|..+..++.+....+.+ ....+..+.+|+.+.+.
T Consensus 241 ~--~~i~~~~f~~~~~l~~~~~~~~~~~-i~~~~F~~~~~l~~~~~~~~~i---~~~~F~~~~~L~~i~l~ 305 (394)
T 4fs7_A 241 F--TELGKSVFYGCTDLESISIQNNKLR-IGGSLFYNCSGLKKVIYGSVIV---PEKTFYGCSSLTEVKLL 305 (394)
T ss_dssp C--CEECSSTTTTCSSCCEEEECCTTCE-ECSCTTTTCTTCCEEEECSSEE---CTTTTTTCTTCCEEEEC
T ss_pred c--eecccccccccccceeEEcCCCcce-eeccccccccccceeccCceee---ccccccccccccccccc
Confidence 1 1233444556666666666554332 3344555555565555544332 22334455555555554
No 128
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.61 E-value=6.4e-15 Score=136.98 Aligned_cols=89 Identities=28% Similarity=0.319 Sum_probs=69.5
Q ss_pred ccceeeCCCCccCCCCcccccCCccCCeEeCCCcccCCCCCcCCCCCCCCCEEECCCCcCCccCchhhcCCCCCCEEecc
Q 005038 538 LLSGLDLSCNKLIGHIPPQIGNLTRIQTLNLSHNNLTGSIPSTFSNLKHVESLDLSNNKLNGKIPHQLVELKTLEVFSVA 617 (717)
Q Consensus 538 ~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~N~i~~~~p~~~~~l~~L~~L~l~ 617 (717)
.|+.|+|++|++++..+..|.++++|++|+|++|+++++.|..|.++++|++|+|++|+++...+..|..+++|+.|+++
T Consensus 55 ~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~ 134 (193)
T 2wfh_A 55 HLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRLRCIPPRTFDGLKSLRLLSLHGNDISVVPEGAFNDLSALSHLAIG 134 (193)
T ss_dssp TCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECC
T ss_pred CCCEEECCCCcCCEeCHhHccCCCCCCEEECCCCccCEeCHHHhCCCCCCCEEECCCCCCCeeChhhhhcCccccEEEeC
Confidence 56666666666666666677888888888888888887777788888888888888888886666678888888888888
Q ss_pred CCcCeecCC
Q 005038 618 YNNLSGEIP 626 (717)
Q Consensus 618 ~N~l~~~~p 626 (717)
+|++.+..+
T Consensus 135 ~N~~~C~c~ 143 (193)
T 2wfh_A 135 ANPLYCDCN 143 (193)
T ss_dssp SSCEECSGG
T ss_pred CCCeecCCc
Confidence 888886543
No 129
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.60 E-value=2e-15 Score=137.45 Aligned_cols=85 Identities=25% Similarity=0.255 Sum_probs=53.1
Q ss_pred ccceeeCCCCccCCCCcccccCCccCCeEeCCCcccCCCCC-cCCCCCCCCCEEECCCCcCCccCc---hhhcCCCCCCE
Q 005038 538 LLSGLDLSCNKLIGHIPPQIGNLTRIQTLNLSHNNLTGSIP-STFSNLKHVESLDLSNNKLNGKIP---HQLVELKTLEV 613 (717)
Q Consensus 538 ~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p-~~~~~l~~L~~L~L~~N~i~~~~p---~~~~~l~~L~~ 613 (717)
.|+.|++++|++.+.+|..+..+++|++|++++|.+++..+ ..+..+++|++|++++|++++..+ ..+..+++|++
T Consensus 72 ~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~ 151 (168)
T 2ell_A 72 KLKKLELSENRIFGGLDMLAEKLPNLTHLNLSGNKLKDISTLEPLKKLECLKSLDLFNCEVTNLNDYRESVFKLLPQLTY 151 (168)
T ss_dssp SCCEEEEESCCCCSCCCHHHHHCTTCCEEECBSSSCCSSGGGGGGSSCSCCCEEECCSSGGGTSTTHHHHHHTTCSSCCE
T ss_pred CCCEEECcCCcCchHHHHHHhhCCCCCEEeccCCccCcchhHHHHhcCCCCCEEEeeCCcCcchHHHHHHHHHhCccCcE
Confidence 45555555555554455555556677777777776664321 566667777777777777764444 36667777777
Q ss_pred EeccCCcCe
Q 005038 614 FSVAYNNLS 622 (717)
Q Consensus 614 L~l~~N~l~ 622 (717)
|++++|.+.
T Consensus 152 L~l~~n~~~ 160 (168)
T 2ell_A 152 LDGYDREDQ 160 (168)
T ss_dssp ETTEETTSC
T ss_pred ecCCCCChh
Confidence 777777665
No 130
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.60 E-value=1.7e-15 Score=137.96 Aligned_cols=137 Identities=26% Similarity=0.280 Sum_probs=111.3
Q ss_pred CCcCCEEeCCCCcCC-cccchhhhCCCCCcEEEcCCCccccccchhccCCCCCCEEEccCCcCccCCCcccccccccccc
Q 005038 411 CSSLVTLDLSYNRLN-GSIPDWVDGLSQLSHLILGHNNLEGEVSVQLCELNQLQLLDLSNNNLHGPIPPCFDNTTLHESY 489 (717)
Q Consensus 411 ~~~L~~L~L~~n~~~-~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~ 489 (717)
.++|++|++++|.+. +.+|..+..+++|++|++++|.+++. ..+..+++|++|++++|.+++.+|..+..
T Consensus 23 ~~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~------- 93 (168)
T 2ell_A 23 PAAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISV--SNLPKLPKLKKLELSENRIFGGLDMLAEK------- 93 (168)
T ss_dssp TTSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSCCCCC--SSCCCCSSCCEEEEESCCCCSCCCHHHHH-------
T ss_pred cccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCCCCCh--hhhccCCCCCEEECcCCcCchHHHHHHhh-------
Confidence 477899999999887 56777778889999999999998865 67888899999999999988765554433
Q ss_pred cCCCCCCcchhhhhhcccccccccccccceEEEeeccceeeeccccccccceeeCCCCccCCCCc-ccccCCccCCeEeC
Q 005038 490 SNSSSPDEQFEIFFSIEGHQGFLEKQNHEIFEFTTKNIAYIYQGKVLSLLSGLDLSCNKLIGHIP-PQIGNLTRIQTLNL 568 (717)
Q Consensus 490 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~-~~l~~l~~L~~L~L 568 (717)
++.|+.|++++|++++..+ ..+..+++|++|++
T Consensus 94 ----------------------------------------------l~~L~~L~Ls~N~l~~~~~~~~l~~l~~L~~L~l 127 (168)
T 2ell_A 94 ----------------------------------------------LPNLTHLNLSGNKLKDISTLEPLKKLECLKSLDL 127 (168)
T ss_dssp ----------------------------------------------CTTCCEEECBSSSCCSSGGGGGGSSCSCCCEEEC
T ss_pred ----------------------------------------------CCCCCEEeccCCccCcchhHHHHhcCCCCCEEEe
Confidence 3378999999999886432 67899999999999
Q ss_pred CCcccCCCCC---cCCCCCCCCCEEECCCCcCCccCch
Q 005038 569 SHNNLTGSIP---STFSNLKHVESLDLSNNKLNGKIPH 603 (717)
Q Consensus 569 s~n~l~~~~p---~~~~~l~~L~~L~L~~N~i~~~~p~ 603 (717)
++|++++..+ ..+..+++|++|++++|.+. ..|+
T Consensus 128 ~~N~l~~~~~~~~~~~~~l~~L~~L~l~~n~~~-~~~~ 164 (168)
T 2ell_A 128 FNCEVTNLNDYRESVFKLLPQLTYLDGYDREDQ-EAPD 164 (168)
T ss_dssp CSSGGGTSTTHHHHHHTTCSSCCEETTEETTSC-BCCS
T ss_pred eCCcCcchHHHHHHHHHhCccCcEecCCCCChh-hccc
Confidence 9999996555 47889999999999999987 4454
No 131
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=99.59 E-value=8.2e-15 Score=134.65 Aligned_cols=89 Identities=24% Similarity=0.280 Sum_probs=66.5
Q ss_pred ccceeeCCCCccCCCCcccccCCccCCeEeCCCcccCCCCCcCCCCCCCCCEEECCCCcCCccCchhhcCCCCCCEEecc
Q 005038 538 LLSGLDLSCNKLIGHIPPQIGNLTRIQTLNLSHNNLTGSIPSTFSNLKHVESLDLSNNKLNGKIPHQLVELKTLEVFSVA 617 (717)
Q Consensus 538 ~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~N~i~~~~p~~~~~l~~L~~L~l~ 617 (717)
.|++|++++|++++..+..|..+++|++|++++|++++..+..|..+++|++|++++|++++..+..+..+++|++|+++
T Consensus 53 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~ 132 (177)
T 2o6r_A 53 QLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHENKLQSLPNGVFDKLTQLKELALDTNQLKSVPDGIFDRLTSLQKIWLH 132 (177)
T ss_dssp TCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECC
T ss_pred cccEEECCCCcceEeChhHccCCCccCEEECCCCCccccCHHHhhCCcccCEEECcCCcceEeCHHHhcCCcccCEEEec
Confidence 46666666666665555567777888888888888886666677788888888888888876555566778888888888
Q ss_pred CCcCeecCC
Q 005038 618 YNNLSGEIP 626 (717)
Q Consensus 618 ~N~l~~~~p 626 (717)
+|++.+.+|
T Consensus 133 ~N~~~~~~~ 141 (177)
T 2o6r_A 133 TNPWDCSCP 141 (177)
T ss_dssp SSCBCCCHH
T ss_pred CCCeeccCc
Confidence 888887665
No 132
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.58 E-value=3.1e-15 Score=133.16 Aligned_cols=81 Identities=23% Similarity=0.246 Sum_probs=57.7
Q ss_pred ccceeeCCCCccCCCCcccccCCccCCeEeCCCcccCCC-CCcCCCCCCCCCEEECCCCcCCccCc---hhhcCCCCCCE
Q 005038 538 LLSGLDLSCNKLIGHIPPQIGNLTRIQTLNLSHNNLTGS-IPSTFSNLKHVESLDLSNNKLNGKIP---HQLVELKTLEV 613 (717)
Q Consensus 538 ~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~-~p~~~~~l~~L~~L~L~~N~i~~~~p---~~~~~l~~L~~ 613 (717)
.|+.|++++|.+++.+|..+..+++|++|++++|++++. .+..+..+++|++|++++|++++..+ ..+..+++|+.
T Consensus 65 ~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~ls~N~i~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~ 144 (149)
T 2je0_A 65 KLKKLELSDNRVSGGLEVLAEKCPNLTHLNLSGNKIKDLSTIEPLKKLENLKSLDLFNCEVTNLNDYRENVFKLLPQLTY 144 (149)
T ss_dssp TCCEEECCSSCCCSCTHHHHHHCTTCCEEECTTSCCCSHHHHGGGGGCTTCCEEECTTCGGGGSTTHHHHHHHHCTTCCE
T ss_pred CCCEEECCCCcccchHHHHhhhCCCCCEEECCCCcCCChHHHHHHhhCCCCCEEeCcCCcccchHHHHHHHHHHCCCccc
Confidence 566666666666655666666777788888888877753 23667778888888888888876555 46777888888
Q ss_pred EeccC
Q 005038 614 FSVAY 618 (717)
Q Consensus 614 L~l~~ 618 (717)
||+++
T Consensus 145 L~l~d 149 (149)
T 2je0_A 145 LDGYD 149 (149)
T ss_dssp ETTBC
T ss_pred ccCCC
Confidence 87763
No 133
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=99.56 E-value=2.1e-14 Score=131.85 Aligned_cols=114 Identities=23% Similarity=0.278 Sum_probs=103.8
Q ss_pred cccceeeCCCCccCCCCcccccCCccCCeEeCCCcccCCCCCcCCCCCCCCCEEECCCCcCCccCchhhcCCCCCCEEec
Q 005038 537 SLLSGLDLSCNKLIGHIPPQIGNLTRIQTLNLSHNNLTGSIPSTFSNLKHVESLDLSNNKLNGKIPHQLVELKTLEVFSV 616 (717)
Q Consensus 537 ~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~N~i~~~~p~~~~~l~~L~~L~l 616 (717)
+.|+.|++++|++.+..+..|..+++|++|++++|.+++..+..|..+++|++|++++|++++..+..+..+++|++|++
T Consensus 28 ~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l 107 (177)
T 2o6r_A 28 SSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHENKLQSLPNGVFDKLTQLKELAL 107 (177)
T ss_dssp TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred CCCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcceEeChhHccCCCccCEEECCCCCccccCHHHhhCCcccCEEEC
Confidence 46999999999999877778899999999999999999877778999999999999999999877778899999999999
Q ss_pred cCCcCeecCCCCCcccCCCCcccccCCcCCCCCC
Q 005038 617 AYNNLSGEIPEWKAQFATFNESSYEGNTFLCGLP 650 (717)
Q Consensus 617 ~~N~l~~~~p~~~~~~~~l~~~~~~~n~~~c~~~ 650 (717)
++|.+++..+..+..+..++.+.+.+|++.|+++
T Consensus 108 ~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~ 141 (177)
T 2o6r_A 108 DTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP 141 (177)
T ss_dssp CSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCHH
T ss_pred cCCcceEeCHHHhcCCcccCEEEecCCCeeccCc
Confidence 9999997766667788999999999999999875
No 134
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.56 E-value=4.1e-15 Score=132.41 Aligned_cols=129 Identities=26% Similarity=0.301 Sum_probs=98.6
Q ss_pred CCcCCEEeCCCCcCC-cccchhhhCCCCCcEEEcCCCccccccchhccCCCCCCEEEccCCcCccCCCcccccccccccc
Q 005038 411 CSSLVTLDLSYNRLN-GSIPDWVDGLSQLSHLILGHNNLEGEVSVQLCELNQLQLLDLSNNNLHGPIPPCFDNTTLHESY 489 (717)
Q Consensus 411 ~~~L~~L~L~~n~~~-~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~ 489 (717)
.+++++|++++|.+. +.+|..+..+++|+.|++++|++++. ..+..+++|++|++++|.+++.+|..+..
T Consensus 16 ~~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~------- 86 (149)
T 2je0_A 16 PSDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSI--ANLPKLNKLKKLELSDNRVSGGLEVLAEK------- 86 (149)
T ss_dssp GGGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCCCCC--TTCCCCTTCCEEECCSSCCCSCTHHHHHH-------
T ss_pred CccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCCCCCc--hhhhcCCCCCEEECCCCcccchHHHHhhh-------
Confidence 367888888888887 56677777788888888888888765 66778888888888888887655544332
Q ss_pred cCCCCCCcchhhhhhcccccccccccccceEEEeeccceeeeccccccccceeeCCCCccCCC-CcccccCCccCCeEeC
Q 005038 490 SNSSSPDEQFEIFFSIEGHQGFLEKQNHEIFEFTTKNIAYIYQGKVLSLLSGLDLSCNKLIGH-IPPQIGNLTRIQTLNL 568 (717)
Q Consensus 490 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~-~~~~l~~l~~L~~L~L 568 (717)
+++|+.|++++|++++. .+..+..+++|++|++
T Consensus 87 ----------------------------------------------l~~L~~L~ls~N~i~~~~~~~~~~~l~~L~~L~l 120 (149)
T 2je0_A 87 ----------------------------------------------CPNLTHLNLSGNKIKDLSTIEPLKKLENLKSLDL 120 (149)
T ss_dssp ----------------------------------------------CTTCCEEECTTSCCCSHHHHGGGGGCTTCCEEEC
T ss_pred ----------------------------------------------CCCCCEEECCCCcCCChHHHHHHhhCCCCCEEeC
Confidence 23688888888888753 3477888899999999
Q ss_pred CCcccCCCCC---cCCCCCCCCCEEECCC
Q 005038 569 SHNNLTGSIP---STFSNLKHVESLDLSN 594 (717)
Q Consensus 569 s~n~l~~~~p---~~~~~l~~L~~L~L~~ 594 (717)
++|++++..+ ..+..+++|++|++++
T Consensus 121 ~~N~l~~~~~~~~~~~~~l~~L~~L~l~d 149 (149)
T 2je0_A 121 FNCEVTNLNDYRENVFKLLPQLTYLDGYD 149 (149)
T ss_dssp TTCGGGGSTTHHHHHHHHCTTCCEETTBC
T ss_pred cCCcccchHHHHHHHHHHCCCcccccCCC
Confidence 9999986655 4688889999998864
No 135
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.55 E-value=1.5e-15 Score=170.75 Aligned_cols=196 Identities=21% Similarity=0.234 Sum_probs=96.5
Q ss_pred CCCCEEEccCCcccCCcccccCCCCCCCEEEccCCcCcccCCCccccccccEEeccCcccccccCccccCCCCcCCEEeC
Q 005038 340 TRLQYIIMPNNHLEGPIPVEFCQLDSLQILDISDNNISGSLPSCFHPLSIKQVHLSKNMLHGQLKRGTFFNCSSLVTLDL 419 (717)
Q Consensus 340 ~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~L 419 (717)
+.++.|++.+|.+... +. ..++.++++.+.+.+ +++..|.+. ++...|..++.|+.|+|
T Consensus 173 ~~~~~l~L~~n~~~~~-~~-----~~l~~l~Ls~~~i~~-------------~~~~~n~~~--~~~~~~~~l~~L~~L~L 231 (727)
T 4b8c_D 173 PLTPKIELFANGKDEA-NQ-----ALLQHKKLSQYSIDE-------------DDDIENRMV--MPKDSKYDDQLWHALDL 231 (727)
T ss_dssp ----------------------------------------------------------------------CCCCCCEEEC
T ss_pred CccceEEeeCCCCCcc-hh-----hHhhcCccCcccccC-------------cccccccee--cChhhhccCCCCcEEEC
Confidence 4466666666665532 21 234444555544432 222233331 33444777788888888
Q ss_pred CCCcCCcccchhhhCCCCCcEEEcCCCccccccchhccCCCCCCEEEccCCcCccCCCcccccccccccccCCCCCCcch
Q 005038 420 SYNRLNGSIPDWVDGLSQLSHLILGHNNLEGEVSVQLCELNQLQLLDLSNNNLHGPIPPCFDNTTLHESYSNSSSPDEQF 499 (717)
Q Consensus 420 ~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 499 (717)
++|.+. .+|..+..+++|++|+|++|.++ .+|..+..+++|+.|+|++|.++ .+|..+..+.
T Consensus 232 s~n~l~-~l~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~--------------- 293 (727)
T 4b8c_D 232 SNLQIF-NISANIFKYDFLTRLYLNGNSLT-ELPAEIKNLSNLRVLDLSHNRLT-SLPAELGSCF--------------- 293 (727)
T ss_dssp TTSCCS-CCCGGGGGCCSCSCCBCTTSCCS-CCCGGGGGGTTCCEEECTTSCCS-SCCSSGGGGT---------------
T ss_pred CCCCCC-CCChhhcCCCCCCEEEeeCCcCc-ccChhhhCCCCCCEEeCcCCcCC-ccChhhcCCC---------------
Confidence 888877 45555557788888888888887 56677777888888888888776 4455554433
Q ss_pred hhhhhcccccccccccccceEEEeeccceeeeccccccccceeeCCCCccCCCCcccccCCccCCeEeCCCcccCCCCCc
Q 005038 500 EIFFSIEGHQGFLEKQNHEIFEFTTKNIAYIYQGKVLSLLSGLDLSCNKLIGHIPPQIGNLTRIQTLNLSHNNLTGSIPS 579 (717)
Q Consensus 500 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~ 579 (717)
+|++|+|++|.++ .+|..|+.+++|++|+|++|.+++.+|.
T Consensus 294 --------------------------------------~L~~L~L~~N~l~-~lp~~~~~l~~L~~L~L~~N~l~~~~p~ 334 (727)
T 4b8c_D 294 --------------------------------------QLKYFYFFDNMVT-TLPWEFGNLCNLQFLGVEGNPLEKQFLK 334 (727)
T ss_dssp --------------------------------------TCSEEECCSSCCC-CCCSSTTSCTTCCCEECTTSCCCSHHHH
T ss_pred --------------------------------------CCCEEECCCCCCC-ccChhhhcCCCccEEeCCCCccCCCChH
Confidence 6777777777776 5566677777777777777777776666
Q ss_pred CCCCCC-CCCEEECCCCcCCccCchhhcCCCCCCEEeccCC
Q 005038 580 TFSNLK-HVESLDLSNNKLNGKIPHQLVELKTLEVFSVAYN 619 (717)
Q Consensus 580 ~~~~l~-~L~~L~L~~N~i~~~~p~~~~~l~~L~~L~l~~N 619 (717)
.+..+. .+..|+|++|.+++.+|. .|+.|++++|
T Consensus 335 ~~~~~~~~~~~l~l~~N~l~~~~p~------~l~~l~l~~n 369 (727)
T 4b8c_D 335 ILTEKSVTGLIFYLRDNRPEIPLPH------ERRFIEINTD 369 (727)
T ss_dssp HHHHHHHHHHHHHHHHCCCCCCCCC------C---------
T ss_pred HHhhcchhhhHHhhccCcccCcCcc------ccceeEeecc
Confidence 654432 122366777777766664 3555666666
No 136
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.54 E-value=1.9e-15 Score=169.90 Aligned_cols=166 Identities=22% Similarity=0.144 Sum_probs=82.3
Q ss_pred CCCCeEECcCCcCcccCcccccCCCCCCEEEccCCcCcCcCCcccCCCCCCCEEEccCCcccCCcccccCCCCCCCEEEc
Q 005038 292 TNLQWLQLEGNRFVGEIPQSLSKCSSLEGLYLNNNSLLGKIPRWLGNLTRLQYIIMPNNHLEGPIPVEFCQLDSLQILDI 371 (717)
Q Consensus 292 ~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l 371 (717)
+.++.|+|.+|.+... +.. .++.++|+.+.+.+ +++..|.+. ..+..+..++.|+.|++
T Consensus 173 ~~~~~l~L~~n~~~~~-~~~-----~l~~l~Ls~~~i~~--------------~~~~~n~~~-~~~~~~~~l~~L~~L~L 231 (727)
T 4b8c_D 173 PLTPKIELFANGKDEA-NQA-----LLQHKKLSQYSIDE--------------DDDIENRMV-MPKDSKYDDQLWHALDL 231 (727)
T ss_dssp ----------------------------------------------------------------------CCCCCCEEEC
T ss_pred CccceEEeeCCCCCcc-hhh-----HhhcCccCcccccC--------------cccccccee-cChhhhccCCCCcEEEC
Confidence 5577777777766642 222 23334444443321 122223322 33444555555555555
Q ss_pred cCCcCcccCCCccccccccEEeccCcccccccCccccCCCCcCCEEeCCCCcCCcccchhhhCCCCCcEEEcCCCccccc
Q 005038 372 SDNNISGSLPSCFHPLSIKQVHLSKNMLHGQLKRGTFFNCSSLVTLDLSYNRLNGSIPDWVDGLSQLSHLILGHNNLEGE 451 (717)
Q Consensus 372 ~~n~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~ 451 (717)
++|.+....+..+.+.+|+.|+|++|.+. .++.. |..+++|++|+|++|.++ .+|..+..+++|++|+|++|.++ .
T Consensus 232 s~n~l~~l~~~~~~l~~L~~L~Ls~N~l~-~lp~~-~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~L~~N~l~-~ 307 (727)
T 4b8c_D 232 SNLQIFNISANIFKYDFLTRLYLNGNSLT-ELPAE-IKNLSNLRVLDLSHNRLT-SLPAELGSCFQLKYFYFFDNMVT-T 307 (727)
T ss_dssp TTSCCSCCCGGGGGCCSCSCCBCTTSCCS-CCCGG-GGGGTTCCEEECTTSCCS-SCCSSGGGGTTCSEEECCSSCCC-C
T ss_pred CCCCCCCCChhhcCCCCCCEEEeeCCcCc-ccChh-hhCCCCCCEEeCcCCcCC-ccChhhcCCCCCCEEECCCCCCC-c
Confidence 55555533333444455555555555554 45543 777888999999999888 56888888889999999999887 5
Q ss_pred cchhccCCCCCCEEEccCCcCccCCCccccc
Q 005038 452 VSVQLCELNQLQLLDLSNNNLHGPIPPCFDN 482 (717)
Q Consensus 452 ~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~ 482 (717)
+|..|..+++|+.|+|++|++++.+|..+..
T Consensus 308 lp~~~~~l~~L~~L~L~~N~l~~~~p~~~~~ 338 (727)
T 4b8c_D 308 LPWEFGNLCNLQFLGVEGNPLEKQFLKILTE 338 (727)
T ss_dssp CCSSTTSCTTCCCEECTTSCCCSHHHHHHHH
T ss_pred cChhhhcCCCccEEeCCCCccCCCChHHHhh
Confidence 5666888889999999999888777765543
No 137
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=99.49 E-value=3.9e-12 Score=132.97 Aligned_cols=298 Identities=12% Similarity=0.154 Sum_probs=138.5
Q ss_pred eeCcccccCCC-CCCeeeCCCCCCCCCcchhccCCCCCCEEeCCCCC---CcccCCccccCCCCCCCEEECCCCcccCcC
Q 005038 9 VVRSQGLCSLV-HLQELYIASNDLRGSLPWCMANMTSLRILDVSSNQ---LTGSISSSPLVHLTSIEELMLSNNYFQIPI 84 (717)
Q Consensus 9 ~i~~~~~~~l~-~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~---i~~~i~~~~~~~l~~L~~L~L~~n~~~~~~ 84 (717)
+|.+.||.++. .|+.+.+..+ ++.+...+|.+|++|+.+.++.|. ++ .|+..+|.++.+|+.+.+..+ ++ .+
T Consensus 53 ~Ig~~aF~~~~~~L~sI~iP~s-vt~Ig~~AF~~C~~L~~i~~~~n~p~~l~-~Ig~~aF~~c~~L~~i~~~~~-~~-~I 128 (394)
T 4gt6_A 53 KIGDRVFCNYKYVLTSVQIPDT-VTEIGSNAFYNCTSLKRVTIQDNKPSCVK-KIGRQAFMFCSELTDIPILDS-VT-EI 128 (394)
T ss_dssp EECTTTTTTCCSCCCEEEECTT-CCEECTTTTTTCTTCCEEEEGGGCCCCCC-EECTTTTTTCTTCCBCGGGTT-CS-EE
T ss_pred EcCHhhccCCCCcCEEEEECCC-eeEEhHHHhhCCccCceEeecCCCCCeee-EechhhchhcccceeeccCCc-cc-ee
Confidence 45666777764 4777777643 555566777777777777776543 44 566666777777776666544 22 24
Q ss_pred CcccccCCCCCCEEEccCCcccccccccccccCCCccccEEEccCCCCCCCCCchhhcCCCCCCEEEccCCCCcccCChh
Q 005038 85 SLEPLFNYSRLKIFNAENNEIKAEITESHSLIAPKFQLNTLSLSSNYGDGFIFPKFLYHQHDLEYVDLSHIKMNGEFPNW 164 (717)
Q Consensus 85 ~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~ 164 (717)
+..+|..+.+|+.+.+..+ +... ....+..+..|+.+.+..+ +. .+...
T Consensus 129 ~~~aF~~c~~L~~i~lp~~-~~~I----------------------------~~~~F~~c~~L~~i~~~~~-~~-~I~~~ 177 (394)
T 4gt6_A 129 DSEAFHHCEELDTVTIPEG-VTSV----------------------------ADGMFSYCYSLHTVTLPDS-VT-AIEER 177 (394)
T ss_dssp CTTTTTTCTTCCEEECCTT-CCEE----------------------------CTTTTTTCTTCCEEECCTT-CC-EECTT
T ss_pred hhhhhhhhcccccccccce-eeee----------------------------cccceecccccccccccce-ee-Eeccc
Confidence 4455666667776666432 1111 1123344445555554432 11 22222
Q ss_pred hhhCCCCCCEEEccCCcCcccCccCcCCCCCcCEEEccCCcCCccCCcccccc-------------CCCCcEEECCCCCC
Q 005038 165 LLENNTKLETLFLVNDSLAGPFRLPIHSHKRLRQLDVSNNNIRGHIPVKIGDV-------------LPSLYVFNNSMNAL 231 (717)
Q Consensus 165 ~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~ls~n~i~~~~~~~~~~~-------------l~~L~~L~l~~n~~ 231 (717)
.+. ...|+.+.+..+. .......+..+..++.......... .+...++.. ...+..+.+. +.+
T Consensus 178 aF~-~~~l~~i~ip~~~-~~i~~~af~~c~~l~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ip-~~v 253 (394)
T 4gt6_A 178 AFT-GTALTQIHIPAKV-TRIGTNAFSECFALSTITSDSESYP-AIDNVLYEKSANGDYALIRYPSQREDPAFKIP-NGV 253 (394)
T ss_dssp TTT-TCCCSEEEECTTC-CEECTTTTTTCTTCCEEEECCSSSC-BSSSCEEEECTTSCEEEEECCTTCCCSEEECC-TTE
T ss_pred ccc-ccceeEEEECCcc-cccccchhhhccccceecccccccc-cccceeecccccccccccccccccccceEEcC-Ccc
Confidence 222 2345555554332 1122334555555555554443322 111111111 0111222211 111
Q ss_pred CccCCccccCCCCCCEEEccCCccccccchhhhhCCCCCCEEEccCcccCccCcccccCCCCCCeEECcCCcCcccCccc
Q 005038 232 DGSIPSSFGNMKFLQILDLSNNHLTGEIPEHLAVGCVNLQFLALSNNNLQGHLFSRNFNLTNLQWLQLEGNRFVGEIPQS 311 (717)
Q Consensus 232 ~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~ 311 (717)
......+|..+..|+.+.+..+.. .+....+.++++|+.+.+. +.++.+...+|.++.+|+.+++..+ ++.+...+
T Consensus 254 ~~i~~~aF~~c~~L~~i~lp~~~~--~I~~~aF~~c~~L~~i~l~-~~i~~I~~~aF~~c~~L~~i~lp~~-v~~I~~~a 329 (394)
T 4gt6_A 254 ARIETHAFDSCAYLASVKMPDSVV--SIGTGAFMNCPALQDIEFS-SRITELPESVFAGCISLKSIDIPEG-ITQILDDA 329 (394)
T ss_dssp EEECTTTTTTCSSCCEEECCTTCC--EECTTTTTTCTTCCEEECC-TTCCEECTTTTTTCTTCCEEECCTT-CCEECTTT
T ss_pred eEcccceeeecccccEEecccccc--eecCcccccccccccccCC-CcccccCceeecCCCCcCEEEeCCc-ccEehHhH
Confidence 112233445555555555543322 3344444445555555553 2333334444555555555555433 33333444
Q ss_pred ccCCCCCCEEEccCCcCcCcCCcccCCCCCCCEEEccCC
Q 005038 312 LSKCSSLEGLYLNNNSLLGKIPRWLGNLTRLQYIIMPNN 350 (717)
Q Consensus 312 ~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~l~~n 350 (717)
|.+|.+|+.+.+..+ ++.....+|.++++|+.+++.++
T Consensus 330 F~~C~~L~~i~ip~s-v~~I~~~aF~~C~~L~~i~~~~~ 367 (394)
T 4gt6_A 330 FAGCEQLERIAIPSS-VTKIPESAFSNCTALNNIEYSGS 367 (394)
T ss_dssp TTTCTTCCEEEECTT-CCBCCGGGGTTCTTCCEEEESSC
T ss_pred hhCCCCCCEEEECcc-cCEEhHhHhhCCCCCCEEEECCc
Confidence 555555555555332 33233344555555555555444
No 138
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=99.49 E-value=1.2e-13 Score=125.49 Aligned_cols=88 Identities=24% Similarity=0.261 Sum_probs=43.7
Q ss_pred cccceeeCCCCccCCCCcccccCCccCCeEeCCCcccCCCCCcCCCCCCCCCEEECCCCcCCccCchhhcCCCCCCEEec
Q 005038 537 SLLSGLDLSCNKLIGHIPPQIGNLTRIQTLNLSHNNLTGSIPSTFSNLKHVESLDLSNNKLNGKIPHQLVELKTLEVFSV 616 (717)
Q Consensus 537 ~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~N~i~~~~p~~~~~l~~L~~L~l 616 (717)
+.++.|+|++|++++..|..|.++++|++|+|++|+++++.+..|..+++|++|+|++|++++..+..|..+++|++|++
T Consensus 30 ~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L 109 (170)
T 3g39_A 30 TTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDNQLKSIPRGAFDNLKSLTHIWL 109 (170)
T ss_dssp TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred CCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECCCCccCEeCHHHhcCCCCCCEEEe
Confidence 44555555555555444444555555555555555555444444445555555555555554433344445555555555
Q ss_pred cCCcCeec
Q 005038 617 AYNNLSGE 624 (717)
Q Consensus 617 ~~N~l~~~ 624 (717)
++|++.+.
T Consensus 110 ~~N~~~c~ 117 (170)
T 3g39_A 110 LNNPWDCA 117 (170)
T ss_dssp CSSCBCTT
T ss_pred CCCCCCCC
Confidence 55555443
No 139
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.48 E-value=4.6e-14 Score=129.41 Aligned_cols=84 Identities=18% Similarity=0.205 Sum_probs=52.4
Q ss_pred ccceeeCCCCccCCCCcccccCCccCCeEeCCCcccCCCCCc--CCCCCCCCCEEECCCCcCCccCch----hhcCCCCC
Q 005038 538 LLSGLDLSCNKLIGHIPPQIGNLTRIQTLNLSHNNLTGSIPS--TFSNLKHVESLDLSNNKLNGKIPH----QLVELKTL 611 (717)
Q Consensus 538 ~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~--~~~~l~~L~~L~L~~N~i~~~~p~----~~~~l~~L 611 (717)
.|+.|++++|++++..+..+..+++|++|++++|.++ .+|. .+..+++|++|++++|++. ..|. .+..+++|
T Consensus 65 ~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~-~~~~~~~l~~l~~L~~L~l~~N~i~-~~~~~~~~~~~~l~~L 142 (176)
T 1a9n_A 65 RLKTLLVNNNRICRIGEGLDQALPDLTELILTNNSLV-ELGDLDPLASLKSLTYLCILRNPVT-NKKHYRLYVIYKVPQV 142 (176)
T ss_dssp SCCEEECCSSCCCEECSCHHHHCTTCCEEECCSCCCC-CGGGGGGGGGCTTCCEEECCSSGGG-GSTTHHHHHHHHCTTC
T ss_pred CCCEEECCCCcccccCcchhhcCCCCCEEECCCCcCC-cchhhHhhhcCCCCCEEEecCCCCC-CcHhHHHHHHHHCCcc
Confidence 3445555555555333334466667777777777775 3443 5667777777777777776 3444 36777777
Q ss_pred CEEeccCCcCee
Q 005038 612 EVFSVAYNNLSG 623 (717)
Q Consensus 612 ~~L~l~~N~l~~ 623 (717)
++||+++|....
T Consensus 143 ~~Ld~~~n~~~~ 154 (176)
T 1a9n_A 143 RVLDFQKVKLKE 154 (176)
T ss_dssp SEETTEECCHHH
T ss_pred ceeCCCcCCHHH
Confidence 777777776653
No 140
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.47 E-value=8.5e-14 Score=127.60 Aligned_cols=134 Identities=21% Similarity=0.199 Sum_probs=108.1
Q ss_pred cCCCCcCCEEeCCCCcCCcccchhhhCCCCCcEEEcCCCccccccchhccCCCCCCEEEccCCcCccCCCcccccccccc
Q 005038 408 FFNCSSLVTLDLSYNRLNGSIPDWVDGLSQLSHLILGHNNLEGEVSVQLCELNQLQLLDLSNNNLHGPIPPCFDNTTLHE 487 (717)
Q Consensus 408 ~~~~~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~ 487 (717)
+..+++|++|++++|.+.. ++......++|+.|++++|.+++. ..+..+++|++|++++|.+++..+..+..
T Consensus 15 ~~~~~~L~~L~l~~n~l~~-i~~~~~~~~~L~~L~Ls~N~l~~~--~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~----- 86 (176)
T 1a9n_A 15 YTNAVRDRELDLRGYKIPV-IENLGATLDQFDAIDFSDNEIRKL--DGFPLLRRLKTLLVNNNRICRIGEGLDQA----- 86 (176)
T ss_dssp EECTTSCEEEECTTSCCCS-CCCGGGGTTCCSEEECCSSCCCEE--CCCCCCSSCCEEECCSSCCCEECSCHHHH-----
T ss_pred cCCcCCceEEEeeCCCCch-hHHhhhcCCCCCEEECCCCCCCcc--cccccCCCCCEEECCCCcccccCcchhhc-----
Confidence 6678899999999999885 455333345999999999999865 57888999999999999998665544443
Q ss_pred cccCCCCCCcchhhhhhcccccccccccccceEEEeeccceeeeccccccccceeeCCCCccCCCCcc--cccCCccCCe
Q 005038 488 SYSNSSSPDEQFEIFFSIEGHQGFLEKQNHEIFEFTTKNIAYIYQGKVLSLLSGLDLSCNKLIGHIPP--QIGNLTRIQT 565 (717)
Q Consensus 488 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~--~l~~l~~L~~ 565 (717)
+++|+.|++++|++.. +|. .+..+++|+.
T Consensus 87 ------------------------------------------------l~~L~~L~L~~N~i~~-~~~~~~l~~l~~L~~ 117 (176)
T 1a9n_A 87 ------------------------------------------------LPDLTELILTNNSLVE-LGDLDPLASLKSLTY 117 (176)
T ss_dssp ------------------------------------------------CTTCCEEECCSCCCCC-GGGGGGGGGCTTCCE
T ss_pred ------------------------------------------------CCCCCEEECCCCcCCc-chhhHhhhcCCCCCE
Confidence 3479999999999974 454 7889999999
Q ss_pred EeCCCcccCCCCCcC----CCCCCCCCEEECCCCcCCc
Q 005038 566 LNLSHNNLTGSIPST----FSNLKHVESLDLSNNKLNG 599 (717)
Q Consensus 566 L~Ls~n~l~~~~p~~----~~~l~~L~~L~L~~N~i~~ 599 (717)
|++++|+++ ..|.. +..+++|+.||+++|....
T Consensus 118 L~l~~N~i~-~~~~~~~~~~~~l~~L~~Ld~~~n~~~~ 154 (176)
T 1a9n_A 118 LCILRNPVT-NKKHYRLYVIYKVPQVRVLDFQKVKLKE 154 (176)
T ss_dssp EECCSSGGG-GSTTHHHHHHHHCTTCSEETTEECCHHH
T ss_pred EEecCCCCC-CcHhHHHHHHHHCCccceeCCCcCCHHH
Confidence 999999998 45553 8889999999999998763
No 141
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=99.45 E-value=4e-12 Score=132.92 Aligned_cols=132 Identities=14% Similarity=0.223 Sum_probs=78.6
Q ss_pred CccccCCC-CCCEEEccCCccccccchhhhhCCCCCCEEEccCcc---cCccCcccccCCCCCCeEECcCCcCcccCccc
Q 005038 236 PSSFGNMK-FLQILDLSNNHLTGEIPEHLAVGCVNLQFLALSNNN---LQGHLFSRNFNLTNLQWLQLEGNRFVGEIPQS 311 (717)
Q Consensus 236 ~~~l~~l~-~L~~L~Ls~n~l~~~~~~~~~~~~~~L~~L~L~~n~---i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~ 311 (717)
..+|.+++ .|+.+.+..+ ++ .+....|.+|.+|+.+.+..+. ++.+...+|.++.+|+.+.+..+ ++.....+
T Consensus 56 ~~aF~~~~~~L~sI~iP~s-vt-~Ig~~AF~~C~~L~~i~~~~n~p~~l~~Ig~~aF~~c~~L~~i~~~~~-~~~I~~~a 132 (394)
T 4gt6_A 56 DRVFCNYKYVLTSVQIPDT-VT-EIGSNAFYNCTSLKRVTIQDNKPSCVKKIGRQAFMFCSELTDIPILDS-VTEIDSEA 132 (394)
T ss_dssp TTTTTTCCSCCCEEEECTT-CC-EECTTTTTTCTTCCEEEEGGGCCCCCCEECTTTTTTCTTCCBCGGGTT-CSEECTTT
T ss_pred HhhccCCCCcCEEEEECCC-ee-EEhHHHhhCCccCceEeecCCCCCeeeEechhhchhcccceeeccCCc-cceehhhh
Confidence 44566664 4777777653 55 6666777777778877776653 55555666777777777666554 34344556
Q ss_pred ccCCCCCCEEEccCCcCcCcCCcccCCCCCCCEEEccCCcccCCcccccCCCCCCCEEEccC
Q 005038 312 LSKCSSLEGLYLNNNSLLGKIPRWLGNLTRLQYIIMPNNHLEGPIPVEFCQLDSLQILDISD 373 (717)
Q Consensus 312 ~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~ 373 (717)
|..+.+|+.+.+..+ +.......|..+..|+.+.+.++ ++.+...+|.. ..|+.+.+..
T Consensus 133 F~~c~~L~~i~lp~~-~~~I~~~~F~~c~~L~~i~~~~~-~~~I~~~aF~~-~~l~~i~ip~ 191 (394)
T 4gt6_A 133 FHHCEELDTVTIPEG-VTSVADGMFSYCYSLHTVTLPDS-VTAIEERAFTG-TALTQIHIPA 191 (394)
T ss_dssp TTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTT-CCCSEEEECT
T ss_pred hhhhcccccccccce-eeeecccceecccccccccccce-eeEeccccccc-cceeEEEECC
Confidence 667777777777543 22244455666666777666544 22233334433 4566666544
No 142
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=99.44 E-value=3.9e-13 Score=122.45 Aligned_cols=106 Identities=23% Similarity=0.269 Sum_probs=61.3
Q ss_pred eEEEeeccceeeeccccccccceeeCCCCccCCCCcccccCCccCCeEeCCCcccCCCCCcCCCCCCCCCEEECCCCcCC
Q 005038 519 IFEFTTKNIAYIYQGKVLSLLSGLDLSCNKLIGHIPPQIGNLTRIQTLNLSHNNLTGSIPSTFSNLKHVESLDLSNNKLN 598 (717)
Q Consensus 519 ~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~N~i~ 598 (717)
.+++..+.+..++.. ..+.|+.|+|++|++.+..|..|.++++|++|+|++|+++++.+..|..+++|++|+|++|+++
T Consensus 16 ~l~~~~n~l~~iP~~-~~~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N~l~ 94 (174)
T 2r9u_A 16 LVNCQNIRLASVPAG-IPTDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDNHLK 94 (174)
T ss_dssp EEECCSSCCSSCCSC-CCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC
T ss_pred EEEeCCCCCCccCCC-cCCCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECCCCccc
Confidence 344444444444432 2355666666666666555666666666666666666666544445566666666666666666
Q ss_pred ccCchhhcCCCCCCEEeccCCcCeecC
Q 005038 599 GKIPHQLVELKTLEVFSVAYNNLSGEI 625 (717)
Q Consensus 599 ~~~p~~~~~l~~L~~L~l~~N~l~~~~ 625 (717)
+..+..|..+++|++|++++|++.+..
T Consensus 95 ~l~~~~~~~l~~L~~L~L~~N~~~c~~ 121 (174)
T 2r9u_A 95 SIPRGAFDNLKSLTHIYLYNNPWDCEC 121 (174)
T ss_dssp CCCTTTTTTCTTCSEEECCSSCBCTTB
T ss_pred eeCHHHhccccCCCEEEeCCCCccccc
Confidence 444444666666666666666666443
No 143
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=99.44 E-value=5.4e-13 Score=121.14 Aligned_cols=110 Identities=25% Similarity=0.263 Sum_probs=99.2
Q ss_pred ccceeeCCCCccCCCCcccccCCccCCeEeCCCcccCCCCCcCCCCCCCCCEEECCCCcCCccCchhhcCCCCCCEEecc
Q 005038 538 LLSGLDLSCNKLIGHIPPQIGNLTRIQTLNLSHNNLTGSIPSTFSNLKHVESLDLSNNKLNGKIPHQLVELKTLEVFSVA 617 (717)
Q Consensus 538 ~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~N~i~~~~p~~~~~l~~L~~L~l~ 617 (717)
..+.+++++|+++. +|..+. ++|++|+|++|++++..|..|.++++|++|+|++|++++..+..|..+++|++|+++
T Consensus 10 ~~~~l~~s~n~l~~-ip~~~~--~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~ 86 (170)
T 3g39_A 10 SGTTVDCSGKSLAS-VPTGIP--TTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLN 86 (170)
T ss_dssp ETTEEECTTSCCSS-CCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECC
T ss_pred CCCEEEeCCCCcCc-cCccCC--CCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECC
Confidence 36789999999984 666553 899999999999998889999999999999999999997777788999999999999
Q ss_pred CCcCeecCCCCCcccCCCCcccccCCcCCCCCC
Q 005038 618 YNNLSGEIPEWKAQFATFNESSYEGNTFLCGLP 650 (717)
Q Consensus 618 ~N~l~~~~p~~~~~~~~l~~~~~~~n~~~c~~~ 650 (717)
+|++++..|..+..+..++.+.+.+||+.|+|+
T Consensus 87 ~N~l~~~~~~~~~~l~~L~~L~L~~N~~~c~c~ 119 (170)
T 3g39_A 87 DNQLKSIPRGAFDNLKSLTHIWLLNNPWDCACS 119 (170)
T ss_dssp SSCCCCCCTTTTTTCTTCCEEECCSSCBCTTBG
T ss_pred CCccCEeCHHHhcCCCCCCEEEeCCCCCCCCch
Confidence 999998877778899999999999999999985
No 144
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=99.42 E-value=1.3e-15 Score=142.86 Aligned_cols=153 Identities=25% Similarity=0.326 Sum_probs=114.0
Q ss_pred CCCcCCEEeCCCCcCCcccch------hhhCCCCCcEEEcCCCccccccchhccCCCCCCEEEccCCcCccCCCcccccc
Q 005038 410 NCSSLVTLDLSYNRLNGSIPD------WVDGLSQLSHLILGHNNLEGEVSVQLCELNQLQLLDLSNNNLHGPIPPCFDNT 483 (717)
Q Consensus 410 ~~~~L~~L~L~~n~~~~~~~~------~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~ 483 (717)
....++.++++.+.+.+..|. .+..+++|++|++++|++++ ++ .+..+++|++|++++|.++. +|..+..
T Consensus 16 ~~~~l~~l~l~~~~l~~~~~~l~~l~~~~~~l~~L~~L~ls~n~l~~-l~-~~~~l~~L~~L~l~~n~l~~-l~~~~~~- 91 (198)
T 1ds9_A 16 ERKSVVATEAEKVELHGMIPPIEKMDATLSTLKACKHLALSTNNIEK-IS-SLSGMENLRILSLGRNLIKK-IENLDAV- 91 (198)
T ss_dssp HTTCCCCTTCSEEECCBCCTTCCCCHHHHHHTTTCSEEECSEEEESC-CC-CHHHHTTCCEEEEEEEEECS-CSSHHHH-
T ss_pred hcccccCcchheeEeccccCcHhhhhHHHhcCCCCCEEECCCCCCcc-cc-ccccCCCCCEEECCCCCccc-ccchhhc-
Confidence 334555566666666555554 78888999999999999886 44 78888999999999998863 3332221
Q ss_pred cccccccCCCCCCcchhhhhhcccccccccccccceEEEeeccceeeeccccccccceeeCCCCccCCCCcccccCCccC
Q 005038 484 TLHESYSNSSSPDEQFEIFFSIEGHQGFLEKQNHEIFEFTTKNIAYIYQGKVLSLLSGLDLSCNKLIGHIPPQIGNLTRI 563 (717)
Q Consensus 484 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L 563 (717)
++.|+.|++++|++++ +| .+..+++|
T Consensus 92 ----------------------------------------------------~~~L~~L~L~~N~l~~-l~-~~~~l~~L 117 (198)
T 1ds9_A 92 ----------------------------------------------------ADTLEELWISYNQIAS-LS-GIEKLVNL 117 (198)
T ss_dssp ----------------------------------------------------HHHCSEEEEEEEECCC-HH-HHHHHHHS
T ss_pred ----------------------------------------------------CCcCCEEECcCCcCCc-CC-ccccCCCC
Confidence 3478899999998885 34 68888999
Q ss_pred CeEeCCCcccCCCCC-cCCCCCCCCCEEECCCCcCCccCchh----------hcCCCCCCEEeccCCcCe
Q 005038 564 QTLNLSHNNLTGSIP-STFSNLKHVESLDLSNNKLNGKIPHQ----------LVELKTLEVFSVAYNNLS 622 (717)
Q Consensus 564 ~~L~Ls~n~l~~~~p-~~~~~l~~L~~L~L~~N~i~~~~p~~----------~~~l~~L~~L~l~~N~l~ 622 (717)
++|++++|.+++..+ ..+..+++|++|++++|++.+..|.. +..+++|+.|| +|+++
T Consensus 118 ~~L~l~~N~i~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~~l~~L~~Ld--~~~i~ 185 (198)
T 1ds9_A 118 RVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLYNDYKENNATSEYRIEVVKRLPNLKKLD--GMPVD 185 (198)
T ss_dssp SEEEESEEECCCHHHHHHHTTTTTCSEEEECSCHHHHHHHTTTTHHHHHHHHHHHCSSCSEEC--CGGGT
T ss_pred CEEECCCCcCCchhHHHHHhcCCCCCEEEecCCccccccccccchHHHHHHHHHhCCCcEEEC--CcccC
Confidence 999999999885332 46788899999999999987665542 77888898887 66665
No 145
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=99.39 E-value=1.9e-12 Score=117.82 Aligned_cols=109 Identities=20% Similarity=0.228 Sum_probs=97.3
Q ss_pred cceeeCCCCccCCCCcccccCCccCCeEeCCCcccCCCCCcCCCCCCCCCEEECCCCcCCccCchhhcCCCCCCEEeccC
Q 005038 539 LSGLDLSCNKLIGHIPPQIGNLTRIQTLNLSHNNLTGSIPSTFSNLKHVESLDLSNNKLNGKIPHQLVELKTLEVFSVAY 618 (717)
Q Consensus 539 L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~N~i~~~~p~~~~~l~~L~~L~l~~ 618 (717)
-+.+++++|++. .+|..+. ++|++|+|++|++++..|..|.++++|++|+|++|++++..+..|..+++|++|++++
T Consensus 14 ~~~l~~~~n~l~-~iP~~~~--~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~ 90 (174)
T 2r9u_A 14 QTLVNCQNIRLA-SVPAGIP--TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLND 90 (174)
T ss_dssp SSEEECCSSCCS-SCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred CcEEEeCCCCCC-ccCCCcC--CCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECCC
Confidence 478999999997 5666654 8999999999999988899999999999999999999977667788999999999999
Q ss_pred CcCeecCCCCCcccCCCCcccccCCcCCCCCC
Q 005038 619 NNLSGEIPEWKAQFATFNESSYEGNTFLCGLP 650 (717)
Q Consensus 619 N~l~~~~p~~~~~~~~l~~~~~~~n~~~c~~~ 650 (717)
|.+++..+..+..+..++.+.+.+|++.|.|+
T Consensus 91 N~l~~l~~~~~~~l~~L~~L~L~~N~~~c~~~ 122 (174)
T 2r9u_A 91 NHLKSIPRGAFDNLKSLTHIYLYNNPWDCECR 122 (174)
T ss_dssp SCCCCCCTTTTTTCTTCSEEECCSSCBCTTBG
T ss_pred CccceeCHHHhccccCCCEEEeCCCCcccccc
Confidence 99997766668889999999999999999875
No 146
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=99.33 E-value=8.2e-15 Score=137.29 Aligned_cols=138 Identities=23% Similarity=0.253 Sum_probs=115.6
Q ss_pred hhCCCCCcEEEcCCCccccccch------hccCCCCCCEEEccCCcCccCCCcccccccccccccCCCCCCcchhhhhhc
Q 005038 432 VDGLSQLSHLILGHNNLEGEVSV------QLCELNQLQLLDLSNNNLHGPIPPCFDNTTLHESYSNSSSPDEQFEIFFSI 505 (717)
Q Consensus 432 ~~~l~~L~~L~L~~n~l~~~~~~------~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 505 (717)
+...+.++.++++.+.+.+..+. .+..+++|++|++++|.+++ +| .+..
T Consensus 14 ~~~~~~l~~l~l~~~~l~~~~~~l~~l~~~~~~l~~L~~L~ls~n~l~~-l~-~~~~----------------------- 68 (198)
T 1ds9_A 14 FEERKSVVATEAEKVELHGMIPPIEKMDATLSTLKACKHLALSTNNIEK-IS-SLSG----------------------- 68 (198)
T ss_dssp HHHTTCCCCTTCSEEECCBCCTTCCCCHHHHHHTTTCSEEECSEEEESC-CC-CHHH-----------------------
T ss_pred HHhcccccCcchheeEeccccCcHhhhhHHHhcCCCCCEEECCCCCCcc-cc-cccc-----------------------
Confidence 45567788888888888777665 88999999999999999976 33 3333
Q ss_pred ccccccccccccceEEEeeccceeeeccccccccceeeCCCCccCCCCcccccCCccCCeEeCCCcccCCCCCcCCCCCC
Q 005038 506 EGHQGFLEKQNHEIFEFTTKNIAYIYQGKVLSLLSGLDLSCNKLIGHIPPQIGNLTRIQTLNLSHNNLTGSIPSTFSNLK 585 (717)
Q Consensus 506 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~ 585 (717)
++.|+.|++++|+++ .+|..+..+++|++|++++|++++ +| .+..++
T Consensus 69 ------------------------------l~~L~~L~l~~n~l~-~l~~~~~~~~~L~~L~L~~N~l~~-l~-~~~~l~ 115 (198)
T 1ds9_A 69 ------------------------------MENLRILSLGRNLIK-KIENLDAVADTLEELWISYNQIAS-LS-GIEKLV 115 (198)
T ss_dssp ------------------------------HTTCCEEEEEEEEEC-SCSSHHHHHHHCSEEEEEEEECCC-HH-HHHHHH
T ss_pred ------------------------------CCCCCEEECCCCCcc-cccchhhcCCcCCEEECcCCcCCc-CC-ccccCC
Confidence 347999999999998 567788888999999999999996 45 688899
Q ss_pred CCCEEECCCCcCCccCc-hhhcCCCCCCEEeccCCcCeecCCC
Q 005038 586 HVESLDLSNNKLNGKIP-HQLVELKTLEVFSVAYNNLSGEIPE 627 (717)
Q Consensus 586 ~L~~L~L~~N~i~~~~p-~~~~~l~~L~~L~l~~N~l~~~~p~ 627 (717)
+|++|++++|++++..+ ..+..+++|++|++++|++++.+|.
T Consensus 116 ~L~~L~l~~N~i~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~ 158 (198)
T 1ds9_A 116 NLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLYNDYKE 158 (198)
T ss_dssp HSSEEEESEEECCCHHHHHHHTTTTTCSEEEECSCHHHHHHHT
T ss_pred CCCEEECCCCcCCchhHHHHHhcCCCCCEEEecCCcccccccc
Confidence 99999999999985433 5789999999999999999988775
No 147
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=99.26 E-value=6.3e-12 Score=129.21 Aligned_cols=112 Identities=17% Similarity=0.194 Sum_probs=86.4
Q ss_pred ccceeeCCC-CccCCCCcccccCCccCCeEeCCCcccCCCCCcCCCCCCCCCEEECCCCcCCccCchhhcCCCCCCEEec
Q 005038 538 LLSGLDLSC-NKLIGHIPPQIGNLTRIQTLNLSHNNLTGSIPSTFSNLKHVESLDLSNNKLNGKIPHQLVELKTLEVFSV 616 (717)
Q Consensus 538 ~L~~L~L~~-n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~N~i~~~~p~~~~~l~~L~~L~l 616 (717)
+|+.|+|++ |.+.+..+..|.++++|++|+|++|+|+++.|..|.++++|++|+|++|++++..+..+..++ |+.|++
T Consensus 32 ~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~-L~~l~l 110 (347)
T 2ifg_A 32 NLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFNALESLSWKTVQGLS-LQELVL 110 (347)
T ss_dssp CCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCSSCCSCCCSTTTCSCC-CCEEEC
T ss_pred CeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCCCCccceeCHHHcccCC-ceEEEe
Confidence 688999986 999887778899999999999999999988888899999999999999999866666666665 999999
Q ss_pred cCCcCeecCC-CCCcccCCCCcccccCCcCCCCCC
Q 005038 617 AYNNLSGEIP-EWKAQFATFNESSYEGNTFLCGLP 650 (717)
Q Consensus 617 ~~N~l~~~~p-~~~~~~~~l~~~~~~~n~~~c~~~ 650 (717)
++|++.+.++ .|+..+.......+..+.+.|..|
T Consensus 111 ~~N~~~c~c~l~~~~~~~~~~~~~l~~~~~~C~~~ 145 (347)
T 2ifg_A 111 SGNPLHCSCALRWLQRWEEEGLGGVPEQKLQCHGQ 145 (347)
T ss_dssp CSSCCCCCGGGHHHHHHHHTTCSSCGGGCCCCSSS
T ss_pred eCCCccCCCccHHHHHHHHhCcccccccCCCCCCC
Confidence 9999987654 333344333334445566666554
No 148
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=99.25 E-value=1.1e-11 Score=127.37 Aligned_cols=109 Identities=17% Similarity=0.221 Sum_probs=97.2
Q ss_pred ceeeCCCC-ccCCCCcccccCCccCCeEeCCC-cccCCCCCcCCCCCCCCCEEECCCCcCCccCchhhcCCCCCCEEecc
Q 005038 540 SGLDLSCN-KLIGHIPPQIGNLTRIQTLNLSH-NNLTGSIPSTFSNLKHVESLDLSNNKLNGKIPHQLVELKTLEVFSVA 617 (717)
Q Consensus 540 ~~L~L~~n-~l~~~~~~~l~~l~~L~~L~Ls~-n~l~~~~p~~~~~l~~L~~L~L~~N~i~~~~p~~~~~l~~L~~L~l~ 617 (717)
..++.+++ +++ .+|. +..+++|++|+|++ |.++++.+..|.++++|++|+|++|++++..|..|..+++|+.|+|+
T Consensus 11 ~~v~~~~~n~l~-~ip~-l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~ 88 (347)
T 2ifg_A 11 SGLRCTRDGALD-SLHH-LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLS 88 (347)
T ss_dssp SCEECCSSCCCT-TTTT-SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECC
T ss_pred CEEEcCCCCCCC-ccCC-CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCC
Confidence 45788888 888 4677 99999999999996 99998888899999999999999999999999999999999999999
Q ss_pred CCcCeecCCCCCcccCCCCcccccCCcCCCCCCC
Q 005038 618 YNNLSGEIPEWKAQFATFNESSYEGNTFLCGLPL 651 (717)
Q Consensus 618 ~N~l~~~~p~~~~~~~~l~~~~~~~n~~~c~~~l 651 (717)
+|+|++..|..+..+. ++.+.+.+|++.|+|.+
T Consensus 89 ~N~l~~~~~~~~~~~~-L~~l~l~~N~~~c~c~l 121 (347)
T 2ifg_A 89 FNALESLSWKTVQGLS-LQELVLSGNPLHCSCAL 121 (347)
T ss_dssp SSCCSCCCSTTTCSCC-CCEEECCSSCCCCCGGG
T ss_pred CCccceeCHHHcccCC-ceEEEeeCCCccCCCcc
Confidence 9999977666665554 89999999999999864
No 149
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=99.19 E-value=2e-09 Score=111.95 Aligned_cols=60 Identities=13% Similarity=0.176 Sum_probs=25.6
Q ss_pred cccCCccCCeEeCCCcccCCCCCcCCCCCCCCCEEECCCCcCCccCchhhcCCCCCCEEec
Q 005038 556 QIGNLTRIQTLNLSHNNLTGSIPSTFSNLKHVESLDLSNNKLNGKIPHQLVELKTLEVFSV 616 (717)
Q Consensus 556 ~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~N~i~~~~p~~~~~l~~L~~L~l 616 (717)
+|.++++|+.+.+.++.++.+.+.+|.++++|+.++|..+ ++.+...+|.++++|+.+.+
T Consensus 281 aF~~c~~L~~i~l~~~~i~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~C~~L~~i~i 340 (379)
T 4h09_A 281 LCSGCSNLTKVVMDNSAIETLEPRVFMDCVKLSSVTLPTA-LKTIQVYAFKNCKALSTISY 340 (379)
T ss_dssp TTTTCTTCCEEEECCTTCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCCCCC
T ss_pred ccccccccccccccccccceehhhhhcCCCCCCEEEcCcc-ccEEHHHHhhCCCCCCEEEE
Confidence 3444444444444444444333344444444444444332 33233334444444444443
No 150
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=99.18 E-value=8.1e-13 Score=135.98 Aligned_cols=136 Identities=20% Similarity=0.111 Sum_probs=64.2
Q ss_pred CCcCEEEccCCcCCccCCccccccCCCCcEEECCCCCCCccCCccc-----cCCCCCCEEEccCCccccccchhh---hh
Q 005038 194 KRLRQLDVSNNNIRGHIPVKIGDVLPSLYVFNNSMNALDGSIPSSF-----GNMKFLQILDLSNNHLTGEIPEHL---AV 265 (717)
Q Consensus 194 ~~L~~L~ls~n~i~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l-----~~l~~L~~L~Ls~n~l~~~~~~~~---~~ 265 (717)
++|++|++++|.+++.....+...+++|+.|++++|.++......+ ...++|++|++++|.+++.....+ ..
T Consensus 101 ~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~~L~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~ 180 (372)
T 3un9_A 101 HALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPEACKDLRDLLLHDQCQITTLRLSNNPLTAAGVAVLMEGLA 180 (372)
T ss_dssp SCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSCCCHHHHHHHHHHHHSTTCCCCEEECCSSCCHHHHHHHHHHHHH
T ss_pred CCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCCCCHHHHHHHHHHHHhcCCccceeeCCCCCCChHHHHHHHHHHh
Confidence 4566666666666533333333334455555555555543222222 234556666666666652211111 12
Q ss_pred CCCCCCEEEccCcccCccC----cccccCCCCCCeEECcCCcCcccC----cccccCCCCCCEEEccCCcCc
Q 005038 266 GCVNLQFLALSNNNLQGHL----FSRNFNLTNLQWLQLEGNRFVGEI----PQSLSKCSSLEGLYLNNNSLL 329 (717)
Q Consensus 266 ~~~~L~~L~L~~n~i~~~~----~~~~~~l~~L~~L~L~~n~l~~~~----~~~~~~l~~L~~L~L~~n~~~ 329 (717)
.+++|++|+|++|.+.+.. ...+...++|++|+|++|.++... ...+...++|++|++++|.++
T Consensus 181 ~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N~i~~~g~~~l~~~L~~~~~L~~L~Ls~N~i~ 252 (372)
T 3un9_A 181 GNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNGAGDTAALALARAAREHPSLELLHLYFNELS 252 (372)
T ss_dssp TCSSCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCSSCCCHHHHHHHHHHHHHCSSCCEEECTTSSCC
T ss_pred cCCCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCCCCCCHHHHHHHHHHHHhCCCCCEEeccCCCCC
Confidence 3455666666665554321 233334455555555555554321 122333445555555555554
No 151
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=99.17 E-value=5.8e-09 Score=108.38 Aligned_cols=145 Identities=12% Similarity=0.093 Sum_probs=87.9
Q ss_pred ccCCCCcCCEEeCCCCcCCcccchhhhCCCCCcEEEcCCCccccccchhccCCCCCCEEEccCCcCccCCCccccccccc
Q 005038 407 TFFNCSSLVTLDLSYNRLNGSIPDWVDGLSQLSHLILGHNNLEGEVSVQLCELNQLQLLDLSNNNLHGPIPPCFDNTTLH 486 (717)
Q Consensus 407 ~~~~~~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~ 486 (717)
++..+..|+.+.+..+ +......+|.++..|+.+.+..+ ++......|..+.+|+.+.+..+ +......+|...
T Consensus 212 ~f~~~~~l~~i~~~~~-~~~i~~~~f~~~~~L~~i~lp~~-v~~I~~~aF~~~~~l~~i~l~~~-i~~i~~~aF~~c--- 285 (379)
T 4h09_A 212 GFSYGKNLKKITITSG-VTTLGDGAFYGMKALDEIAIPKN-VTSIGSFLLQNCTALKTLNFYAK-VKTVPYLLCSGC--- 285 (379)
T ss_dssp TTTTCSSCSEEECCTT-CCEECTTTTTTCSSCCEEEECTT-CCEECTTTTTTCTTCCEEEECCC-CSEECTTTTTTC---
T ss_pred ccccccccceeeeccc-eeEEccccccCCccceEEEcCCC-ccEeCccccceeehhcccccccc-ceeccccccccc---
Confidence 3555666666666543 33344455666667777766554 44455556666677777766433 333333333332
Q ss_pred ccccCCCCCCcchhhhhhcccccccccccccceEEEeeccceeeeccccccccceeeCCCCccCCCCcccccCCccCCeE
Q 005038 487 ESYSNSSSPDEQFEIFFSIEGHQGFLEKQNHEIFEFTTKNIAYIYQGKVLSLLSGLDLSCNKLIGHIPPQIGNLTRIQTL 566 (717)
Q Consensus 487 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L 566 (717)
++|+.+++.++.++.+...+|.++.+|+.+
T Consensus 286 --------------------------------------------------~~L~~i~l~~~~i~~I~~~aF~~c~~L~~i 315 (379)
T 4h09_A 286 --------------------------------------------------SNLTKVVMDNSAIETLEPRVFMDCVKLSSV 315 (379)
T ss_dssp --------------------------------------------------TTCCEEEECCTTCCEECTTTTTTCTTCCEE
T ss_pred --------------------------------------------------cccccccccccccceehhhhhcCCCCCCEE
Confidence 256677776666665556677788888888
Q ss_pred eCCCcccCCCCCcCCCCCCCCCEEECCCCcCCccCchhhcCCC
Q 005038 567 NLSHNNLTGSIPSTFSNLKHVESLDLSNNKLNGKIPHQLVELK 609 (717)
Q Consensus 567 ~Ls~n~l~~~~p~~~~~l~~L~~L~L~~N~i~~~~p~~~~~l~ 609 (717)
+|..+ ++.+-..+|.++++|+.+.+..+ ++.+...+|.++.
T Consensus 316 ~lp~~-l~~I~~~aF~~C~~L~~i~ip~~-v~~I~~~aF~~c~ 356 (379)
T 4h09_A 316 TLPTA-LKTIQVYAFKNCKALSTISYPKS-ITLIESGAFEGSS 356 (379)
T ss_dssp ECCTT-CCEECTTTTTTCTTCCCCCCCTT-CCEECTTTTTTSS
T ss_pred EcCcc-ccEEHHHHhhCCCCCCEEEECCc-cCEEchhHhhCCC
Confidence 88654 55555667888888888877654 5545555665543
No 152
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=99.14 E-value=2.1e-12 Score=132.83 Aligned_cols=135 Identities=19% Similarity=0.141 Sum_probs=72.5
Q ss_pred CCCCEEEccCCccccccchhhhhCCCCCCEEEccCcccCccCcccc-----cCCCCCCeEECcCCcCccc----Cccccc
Q 005038 243 KFLQILDLSNNHLTGEIPEHLAVGCVNLQFLALSNNNLQGHLFSRN-----FNLTNLQWLQLEGNRFVGE----IPQSLS 313 (717)
Q Consensus 243 ~~L~~L~Ls~n~l~~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~-----~~l~~L~~L~L~~n~l~~~----~~~~~~ 313 (717)
++|++|+|++|.+++.....+...+++|++|+|++|.++......+ ...++|++|+|++|.++.. ++..+.
T Consensus 101 ~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~~L~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~ 180 (372)
T 3un9_A 101 HALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPEACKDLRDLLLHDQCQITTLRLSNNPLTAAGVAVLMEGLA 180 (372)
T ss_dssp SCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSCCCHHHHHHHHHHHHSTTCCCCEEECCSSCCHHHHHHHHHHHHH
T ss_pred CCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCCCCHHHHHHHHHHHHhcCCccceeeCCCCCCChHHHHHHHHHHh
Confidence 4555555655555433333333334456666666665553322222 2345666666666665532 223345
Q ss_pred CCCCCCEEEccCCcCcCcC----CcccCCCCCCCEEEccCCcccCC----cccccCCCCCCCEEEccCCcCc
Q 005038 314 KCSSLEGLYLNNNSLLGKI----PRWLGNLTRLQYIIMPNNHLEGP----IPVEFCQLDSLQILDISDNNIS 377 (717)
Q Consensus 314 ~l~~L~~L~L~~n~~~~~~----~~~~~~l~~L~~L~l~~n~~~~~----~~~~~~~l~~L~~L~l~~n~~~ 377 (717)
.+++|++|++++|.+.+.. +..+...++|+.|++++|.+++. +...+...+.|++|++++|.+.
T Consensus 181 ~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N~i~~~g~~~l~~~L~~~~~L~~L~Ls~N~i~ 252 (372)
T 3un9_A 181 GNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNGAGDTAALALARAAREHPSLELLHLYFNELS 252 (372)
T ss_dssp TCSSCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCSSCCCHHHHHHHHHHHHHCSSCCEEECTTSSCC
T ss_pred cCCCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCCCCCCHHHHHHHHHHHHhCCCCCEEeccCCCCC
Confidence 5666777777766665322 33445556677777777666532 2233344566777777777665
No 153
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=98.68 E-value=2.1e-08 Score=101.96 Aligned_cols=83 Identities=13% Similarity=0.102 Sum_probs=41.7
Q ss_pred hcCCCCCCEEEccCCCCc---------ccCChhhhhCCCCCCEEEccCCcCcccCccCcCCCCCcCEEEccCCcCCccCC
Q 005038 141 LYHQHDLEYVDLSHIKMN---------GEFPNWLLENNTKLETLFLVNDSLAGPFRLPIHSHKRLRQLDVSNNNIRGHIP 211 (717)
Q Consensus 141 l~~~~~L~~L~l~~~~~~---------~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~ls~n~i~~~~~ 211 (717)
...+++|+.|.+...... +.+. .++..+++|+.|.+.+|.-.. .+ .+ .+++|++|++..+.+.....
T Consensus 135 ~~~l~~L~~L~l~~~~~e~~~is~~~~~~L~-~ll~~~P~L~~L~L~g~~~l~-l~-~~-~~~~L~~L~L~~~~l~~~~l 210 (362)
T 2ra8_A 135 KEKFAHFEGLFWGDIDFEEQEISWIEQVDLS-PVLDAMPLLNNLKIKGTNNLS-IG-KK-PRPNLKSLEIISGGLPDSVV 210 (362)
T ss_dssp HHHHTTCSEEEECCCCTTTCCGGGCBCCBCH-HHHHTCTTCCEEEEECCBTCB-CC-SC-BCTTCSEEEEECSBCCHHHH
T ss_pred hhhcchhhheeecCcchhhcccccccccCHH-HHHhcCCCCcEEEEeCCCCce-ec-cc-cCCCCcEEEEecCCCChHHH
Confidence 344567777776543221 1122 333566777777776652111 11 12 25677777776666543222
Q ss_pred cccc-ccCCCCcEEECC
Q 005038 212 VKIG-DVLPSLYVFNNS 227 (717)
Q Consensus 212 ~~~~-~~l~~L~~L~l~ 227 (717)
..+. ..+|+|+.|+++
T Consensus 211 ~~l~~~~lp~L~~L~L~ 227 (362)
T 2ra8_A 211 EDILGSDLPNLEKLVLY 227 (362)
T ss_dssp HHHHHSBCTTCCEEEEE
T ss_pred HHHHHccCCCCcEEEEe
Confidence 2222 135666666654
No 154
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=98.66 E-value=1.2e-08 Score=103.75 Aligned_cols=59 Identities=17% Similarity=0.196 Sum_probs=27.4
Q ss_pred cccCCCCCCEEEccCCcCcCcCCcccCCCCCCCEEEccCCcccCCcccccC--CCCCCCEEEcc
Q 005038 311 SLSKCSSLEGLYLNNNSLLGKIPRWLGNLTRLQYIIMPNNHLEGPIPVEFC--QLDSLQILDIS 372 (717)
Q Consensus 311 ~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~--~l~~L~~L~l~ 372 (717)
.+..+++|+.|++++|.-. ..+. + .+++|+.|++..+.+.......+. .+++|++|+|+
T Consensus 167 ll~~~P~L~~L~L~g~~~l-~l~~-~-~~~~L~~L~L~~~~l~~~~l~~l~~~~lp~L~~L~L~ 227 (362)
T 2ra8_A 167 VLDAMPLLNNLKIKGTNNL-SIGK-K-PRPNLKSLEIISGGLPDSVVEDILGSDLPNLEKLVLY 227 (362)
T ss_dssp HHHTCTTCCEEEEECCBTC-BCCS-C-BCTTCSEEEEECSBCCHHHHHHHHHSBCTTCCEEEEE
T ss_pred HHhcCCCCcEEEEeCCCCc-eecc-c-cCCCCcEEEEecCCCChHHHHHHHHccCCCCcEEEEe
Confidence 3444555666666554211 1121 2 245666666655554422222222 45666666654
No 155
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=98.33 E-value=1.1e-07 Score=87.15 Aligned_cols=119 Identities=9% Similarity=0.118 Sum_probs=59.7
Q ss_pred ccCCCCCCeeeCCCC-CCCCC----cchhccCCCCCCEEeCCCCCCccc----CCccccCCCCCCCEEECCCCcccCc--
Q 005038 15 LCSLVHLQELYIASN-DLRGS----LPWCMANMTSLRILDVSSNQLTGS----ISSSPLVHLTSIEELMLSNNYFQIP-- 83 (717)
Q Consensus 15 ~~~l~~L~~L~Ls~n-~i~~~----~~~~~~~l~~L~~L~Ls~n~i~~~----i~~~~~~~l~~L~~L~L~~n~~~~~-- 83 (717)
+...+.|++|+|++| .+... +...+...++|++|+|++|.+.+. +.. .+...++|++|+|++|.+...
T Consensus 32 l~~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~-~L~~n~~L~~L~L~~N~i~~~g~ 110 (185)
T 1io0_A 32 QNNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAE-MLKVNNTLKSLNVESNFISGSGI 110 (185)
T ss_dssp HTTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHH-HHHHCSSCCEEECCSSCCCHHHH
T ss_pred HhcCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHH-HHHhCCCcCEEECcCCcCCHHHH
Confidence 445556666666665 55432 233444555666666666655421 111 233345555666655555421
Q ss_pred -CCcccccCCCCCCEEEc--cCCcccccccccccccCCCccccEEEccCCCCCCCCCchhhcCCCCCCEEEccCCCCc
Q 005038 84 -ISLEPLFNYSRLKIFNA--ENNEIKAEITESHSLIAPKFQLNTLSLSSNYGDGFIFPKFLYHQHDLEYVDLSHIKMN 158 (717)
Q Consensus 84 -~~~~~~~~l~~L~~L~l--~~n~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~ 158 (717)
.....+...+.|++|++ ++|.+....... +...+...+.|++|++++|.+.
T Consensus 111 ~~l~~~L~~n~~L~~L~L~~~~N~i~~~g~~~------------------------l~~~L~~n~~L~~L~L~~n~i~ 164 (185)
T 1io0_A 111 LALVEALQSNTSLIELRIDNQSQPLGNNVEME------------------------IANMLEKNTTLLKFGYHFTQQG 164 (185)
T ss_dssp HHHHHGGGGCSSCCEEECCCCSSCCCHHHHHH------------------------HHHHHHHCSSCCEEECCCSSHH
T ss_pred HHHHHHHHhCCCceEEEecCCCCCCCHHHHHH------------------------HHHHHHhCCCcCEEeccCCCCC
Confidence 01123344445555555 445544322211 2345556677888888887764
No 156
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=98.30 E-value=7.9e-08 Score=88.05 Aligned_cols=45 Identities=9% Similarity=0.048 Sum_probs=27.6
Q ss_pred chhhhCCCCCcEEEcCCC-ccccc----cchhccCCCCCCEEEccCCcCc
Q 005038 429 PDWVDGLSQLSHLILGHN-NLEGE----VSVQLCELNQLQLLDLSNNNLH 473 (717)
Q Consensus 429 ~~~~~~l~~L~~L~L~~n-~l~~~----~~~~l~~l~~L~~L~L~~n~l~ 473 (717)
...+...+.|++|+|++| .+... ....+...++|++|+|++|.+.
T Consensus 29 ~~~l~~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~ 78 (185)
T 1io0_A 29 KRIQNNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSN 78 (185)
T ss_dssp HHHHTTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCC
T ss_pred HHHHhcCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCC
Confidence 344556677777777777 66533 2333455566777777766654
No 157
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=98.20 E-value=8.5e-07 Score=85.21 Aligned_cols=120 Identities=19% Similarity=0.179 Sum_probs=73.5
Q ss_pred cceeeCcccccCCCCCCe--eeCCCCCCC---CCcchhccCCCCCCEEeCCCCCCcc--cCCccccCCCCCCCEEECCCC
Q 005038 6 VNGVVRSQGLCSLVHLQE--LYIASNDLR---GSLPWCMANMTSLRILDVSSNQLTG--SISSSPLVHLTSIEELMLSNN 78 (717)
Q Consensus 6 ~~g~i~~~~~~~l~~L~~--L~Ls~n~i~---~~~~~~~~~l~~L~~L~Ls~n~i~~--~i~~~~~~~l~~L~~L~L~~n 78 (717)
-++.++-+.|...+.|+. ++++.|... ..++....++++|++|+|++|++++ .++. .+..+++|++|+|++|
T Consensus 128 ~~~~LdLs~l~~dp~L~~~~l~l~~N~~~~~~~~l~i~~~~l~~L~~L~Ls~N~l~~l~~l~~-~~~~l~~L~~L~Ls~N 206 (267)
T 3rw6_A 128 SQQALDLKGLRSDPDLVAQNIDVVLNRRSCMAATLRIIEENIPELLSLNLSNNRLYRLDDMSS-IVQKAPNLKILNLSGN 206 (267)
T ss_dssp TTTEEECTTGGGCHHHHHTTCCCCTTSHHHHHHHHHHHHHHCTTCCEEECTTSCCCCCGGGTT-HHHHSTTCCEEECTTS
T ss_pred hccccCHHHcCCCcchhhcCccccCCHHHHHHHHHHHHHhhCCCCCEEECCCCCCCCCccchh-HHhhCCCCCEEECCCC
Confidence 344555555666777776 777777533 1122222467888888888888874 2333 4567888888888888
Q ss_pred cccCcCCcccccCCCCCCEEEccCCccccccccc----ccccCCCccccEEEc
Q 005038 79 YFQIPISLEPLFNYSRLKIFNAENNEIKAEITES----HSLIAPKFQLNTLSL 127 (717)
Q Consensus 79 ~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~----~~~~~~~~~L~~L~l 127 (717)
.+.+......+..+ +|++|++++|.+....+.. ...+...++|+.|+=
T Consensus 207 ~i~~~~~l~~l~~l-~L~~L~L~~Npl~~~~~~~~~y~~~il~~~P~L~~LDg 258 (267)
T 3rw6_A 207 ELKSERELDKIKGL-KLEELWLDGNSLCDTFRDQSTYISAIRERFPKLLRLDG 258 (267)
T ss_dssp CCCSGGGGGGGTTS-CCSEEECTTSTTGGGCSSHHHHHHHHHHHCTTCCEESS
T ss_pred ccCCchhhhhcccC-CcceEEccCCcCccccCcchhHHHHHHHHCcccCeECC
Confidence 88754233344444 8888888888887533211 012334457777763
No 158
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=98.19 E-value=1.2e-06 Score=84.22 Aligned_cols=61 Identities=30% Similarity=0.393 Sum_probs=26.4
Q ss_pred cccceeeCCCCccCCC--CcccccCCccCCeEeCCCcccCCCCCcCCCCCC--CCCEEECCCCcCCc
Q 005038 537 SLLSGLDLSCNKLIGH--IPPQIGNLTRIQTLNLSHNNLTGSIPSTFSNLK--HVESLDLSNNKLNG 599 (717)
Q Consensus 537 ~~L~~L~L~~n~l~~~--~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~--~L~~L~L~~N~i~~ 599 (717)
+.|+.|+|++|++++. +|..+..+++|+.|+|++|.+++. ..+..+. +|++|+|++|++.+
T Consensus 170 ~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~--~~l~~l~~l~L~~L~L~~Npl~~ 234 (267)
T 3rw6_A 170 PELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSE--RELDKIKGLKLEELWLDGNSLCD 234 (267)
T ss_dssp TTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSG--GGGGGGTTSCCSEEECTTSTTGG
T ss_pred CCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCc--hhhhhcccCCcceEEccCCcCcc
Confidence 3455555555555432 223334444555555555554432 1122222 44455555554443
No 159
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=97.91 E-value=1e-06 Score=78.13 Aligned_cols=84 Identities=11% Similarity=0.122 Sum_probs=67.1
Q ss_pred ccceeeCCCCccCCCCcccccCCccCCeEeCCCcc-cCCCCCcCCCCC----CCCCEEECCCCc-CCccCchhhcCCCCC
Q 005038 538 LLSGLDLSCNKLIGHIPPQIGNLTRIQTLNLSHNN-LTGSIPSTFSNL----KHVESLDLSNNK-LNGKIPHQLVELKTL 611 (717)
Q Consensus 538 ~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~-l~~~~p~~~~~l----~~L~~L~L~~N~-i~~~~p~~~~~l~~L 611 (717)
.|+.||+++|.++...-..+.++++|++|+|++|. +++.--..++.+ ++|++|+|++|. ++...-..+..+++|
T Consensus 62 ~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~L~~~~~L 141 (176)
T 3e4g_A 62 KIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGIIALHHFRNL 141 (176)
T ss_dssp CEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHHHHGGGCTTC
T ss_pred eEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHHHHHhcCCCC
Confidence 59999999999887666678899999999999995 765333345554 479999999986 776555677889999
Q ss_pred CEEeccCCcC
Q 005038 612 EVFSVAYNNL 621 (717)
Q Consensus 612 ~~L~l~~N~l 621 (717)
+.|++++|+-
T Consensus 142 ~~L~L~~c~~ 151 (176)
T 3e4g_A 142 KYLFLSDLPG 151 (176)
T ss_dssp CEEEEESCTT
T ss_pred CEEECCCCCC
Confidence 9999999963
No 160
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=97.74 E-value=8.5e-06 Score=72.26 Aligned_cols=82 Identities=13% Similarity=0.131 Sum_probs=35.7
Q ss_pred CCCEEEccCcccCccCcccccCCCCCCeEECcCCc-CcccCcccccCC----CCCCEEEccCCc-CcCcCCcccCCCCCC
Q 005038 269 NLQFLALSNNNLQGHLFSRNFNLTNLQWLQLEGNR-FVGEIPQSLSKC----SSLEGLYLNNNS-LLGKIPRWLGNLTRL 342 (717)
Q Consensus 269 ~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~l----~~L~~L~L~~n~-~~~~~~~~~~~l~~L 342 (717)
.|++||++++.|+......+.++++|++|+|++|. +++..-..+..+ ++|++|++++|. +++..-..+..+++|
T Consensus 62 ~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~L~~~~~L 141 (176)
T 3e4g_A 62 KIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGIIALHHFRNL 141 (176)
T ss_dssp CEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHHHHGGGCTTC
T ss_pred eEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHHHHHhcCCCC
Confidence 45555555555554444444455555555555553 332222223332 235555555542 333222233334444
Q ss_pred CEEEccCC
Q 005038 343 QYIIMPNN 350 (717)
Q Consensus 343 ~~L~l~~n 350 (717)
+.|++++|
T Consensus 142 ~~L~L~~c 149 (176)
T 3e4g_A 142 KYLFLSDL 149 (176)
T ss_dssp CEEEEESC
T ss_pred CEEECCCC
Confidence 44444443
No 161
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=97.65 E-value=3.6e-05 Score=65.22 Aligned_cols=96 Identities=17% Similarity=0.158 Sum_probs=54.8
Q ss_pred eEeCCCcccC-CCCCcCCCCCCCCCEEECCCCcCCccCchhhcCCCCCCEEeccCCcCeecCC-CCCcccCCCCcccccC
Q 005038 565 TLNLSHNNLT-GSIPSTFSNLKHVESLDLSNNKLNGKIPHQLVELKTLEVFSVAYNNLSGEIP-EWKAQFATFNESSYEG 642 (717)
Q Consensus 565 ~L~Ls~n~l~-~~~p~~~~~l~~L~~L~L~~N~i~~~~p~~~~~l~~L~~L~l~~N~l~~~~p-~~~~~~~~l~~~~~~~ 642 (717)
.++-++++++ ..+|..+. ++|++|+|++|+|+...+..|..+++|+.|+|++|++.+... .|+..|..-......
T Consensus 12 ~v~Cs~~~L~~~~vP~~lp--~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~~CdC~l~~l~~wl~~~~~~~~- 88 (130)
T 3rfe_A 12 LVDCGRRGLTWASLPTAFP--VDTTELVLTGNNLTALPPGLLDALPALRTAHLGANPWRCDCRLVPLRAWLAGRPERAP- 88 (130)
T ss_dssp EEECCSSCCCTTTSCSCCC--TTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSCCBCSGGGHHHHHHHHTSSCSGG-
T ss_pred EEEeCCCCCccccCCCCCC--cCCCEEECCCCcCCccChhhhhhccccCEEEecCCCeeccCccHHHHHHHHhCccccc-
Confidence 5666666665 23443322 357788888888876666677778888888888888876432 111111100000000
Q ss_pred CcCCCCCCCCCCCCCCCCCCCCCCCCC
Q 005038 643 NTFLCGLPLPICRSPATMPEASIGNEQ 669 (717)
Q Consensus 643 n~~~c~~~l~~C~~~~~~~~~~~~~~~ 669 (717)
.....|..|...+++.+....
T Consensus 89 ------~~~~~C~~P~~l~g~~l~~l~ 109 (130)
T 3rfe_A 89 ------YRDLRCVAPPALRGRLLPYLA 109 (130)
T ss_dssp ------GTTCBCCBSTTTTTCBGGGCC
T ss_pred ------ccCcEeCcChHHcCCCcccCC
Confidence 011248888888887665544
No 162
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=97.16 E-value=0.00012 Score=66.13 Aligned_cols=120 Identities=13% Similarity=0.087 Sum_probs=66.9
Q ss_pred hhccCCCCCCEEeCCCC-CCccc----CCccccCCCCCCCEEECCCCcccCc---CCcccccCCCCCCEEEccCCccccc
Q 005038 37 WCMANMTSLRILDVSSN-QLTGS----ISSSPLVHLTSIEELMLSNNYFQIP---ISLEPLFNYSRLKIFNAENNEIKAE 108 (717)
Q Consensus 37 ~~~~~l~~L~~L~Ls~n-~i~~~----i~~~~~~~l~~L~~L~L~~n~~~~~---~~~~~~~~l~~L~~L~l~~n~l~~~ 108 (717)
..+.+-+.|++|+|++| .|... +.. ++..-+.|++|+|++|.+... .-...+...+.|++|+|++|.|...
T Consensus 35 ~ll~~n~~L~~L~L~~nn~igd~ga~~la~-aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig~~ 113 (197)
T 1pgv_A 35 RLREDDTDLKEVNINNMKRVSKERIRSLIE-AACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPE 113 (197)
T ss_dssp HHHTTCSSCCEEECTTCCSSCHHHHHHHHH-HHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHH
T ss_pred HHHhcCCCccEEECCCCCCCCHHHHHHHHH-HHhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCCHH
Confidence 33445566777777764 55421 222 345556677777777766521 1112334556777777777777655
Q ss_pred cccccc-ccCCCccccEEEccCCCC-CCC-----CCchhhcCCCCCCEEEccCCCC
Q 005038 109 ITESHS-LIAPKFQLNTLSLSSNYG-DGF-----IFPKFLYHQHDLEYVDLSHIKM 157 (717)
Q Consensus 109 ~~~~~~-~~~~~~~L~~L~l~~~~~-~~~-----~~~~~l~~~~~L~~L~l~~~~~ 157 (717)
....+. .+...+.|++|+|+.+.. ..| .+...+..-+.|+.|+++.+..
T Consensus 114 Ga~ala~aL~~N~tL~~L~L~n~~~~~ig~~g~~~ia~aL~~N~tL~~L~l~~~~~ 169 (197)
T 1pgv_A 114 LLARLLRSTLVTQSIVEFKADNQRQSVLGNQVEMDMMMAIEENESLLRVGISFASM 169 (197)
T ss_dssp HHHHHHHHTTTTCCCSEEECCCCSSCCCCHHHHHHHHHHHHHCSSCCEEECCCCCH
T ss_pred HHHHHHHHHhhCCceeEEECCCCcCcCcCHHHHHHHHHHHHhCCCcCeEeccCCCc
Confidence 443322 233344677777743222 222 1345566677888898886654
No 163
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=96.91 E-value=0.0017 Score=54.77 Aligned_cols=57 Identities=21% Similarity=0.257 Sum_probs=45.2
Q ss_pred CeeeCCCCCCC-CCcchhccCCCCCCEEeCCCCCCcccCCccccCCCCCCCEEECCCCccc
Q 005038 22 QELYIASNDLR-GSLPWCMANMTSLRILDVSSNQLTGSISSSPLVHLTSIEELMLSNNYFQ 81 (717)
Q Consensus 22 ~~L~Ls~n~i~-~~~~~~~~~l~~L~~L~Ls~n~i~~~i~~~~~~~l~~L~~L~L~~n~~~ 81 (717)
++++-+++.++ ..+|..+. ++|++|+|++|+|+ .++...|..+++|++|+|++|.+.
T Consensus 11 ~~v~Cs~~~L~~~~vP~~lp--~~l~~L~Ls~N~l~-~l~~~~f~~l~~L~~L~L~~NP~~ 68 (130)
T 3rfe_A 11 TLVDCGRRGLTWASLPTAFP--VDTTELVLTGNNLT-ALPPGLLDALPALRTAHLGANPWR 68 (130)
T ss_dssp TEEECCSSCCCTTTSCSCCC--TTCSEEECTTSCCS-SCCTTTGGGCTTCCEEECCSSCCB
T ss_pred CEEEeCCCCCccccCCCCCC--cCCCEEECCCCcCC-ccChhhhhhccccCEEEecCCCee
Confidence 47888888886 34554443 57899999999998 888878888999999999988776
No 164
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=96.86 E-value=0.00033 Score=63.37 Aligned_cols=11 Identities=18% Similarity=0.211 Sum_probs=5.5
Q ss_pred CCCCCEEEccC
Q 005038 242 MKFLQILDLSN 252 (717)
Q Consensus 242 l~~L~~L~Ls~ 252 (717)
-+.|+.|+|++
T Consensus 40 n~~L~~L~L~~ 50 (197)
T 1pgv_A 40 DTDLKEVNINN 50 (197)
T ss_dssp CSSCCEEECTT
T ss_pred CCCccEEECCC
Confidence 34455555554
No 165
>2lz0_A Uncharacterized protein; hypothetical leucine rich repeat protein, structural genomic unknown function; NMR {Bacteroides capillosus}
Probab=78.09 E-value=2.2 Score=33.44 Aligned_cols=46 Identities=22% Similarity=0.253 Sum_probs=26.6
Q ss_pred CCCCCcchhccCCCCCCEEeCCCCCCcccCCccccCCCCCCCEEECCC
Q 005038 30 DLRGSLPWCMANMTSLRILDVSSNQLTGSISSSPLVHLTSIEELMLSN 77 (717)
Q Consensus 30 ~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~i~~~~~~~l~~L~~L~L~~ 77 (717)
.++.+...+|.+|.+|+.+.+..+ ++ .|...+|.++.+|+.+.+..
T Consensus 7 ~vt~I~~~aF~~c~~L~~i~iP~~-v~-~Ig~~aF~~C~~L~~i~~~~ 52 (100)
T 2lz0_A 7 PVVGMDKSLFAGNTVIREITVQPN-IG-LLYDGMFSGCTALEKLILTG 52 (100)
T ss_dssp CCCSSCSCTTTTCTTCCCEEECTT-SS-CCCTTSSTTCTTCCCEEECC
T ss_pred ccCEecHHHhcCCCCCcEEEcCCc-hh-eEcHHHHhccCCccEEEEcC
Confidence 344445556666666666666654 22 45555666666666666654
No 166
>2lz0_A Uncharacterized protein; hypothetical leucine rich repeat protein, structural genomic unknown function; NMR {Bacteroides capillosus}
Probab=77.51 E-value=2.8 Score=32.78 Aligned_cols=43 Identities=12% Similarity=0.075 Sum_probs=20.8
Q ss_pred eeCcccccCCCCCCeeeCCCCCCCCCcchhccCCCCCCEEeCCC
Q 005038 9 VVRSQGLCSLVHLQELYIASNDLRGSLPWCMANMTSLRILDVSS 52 (717)
Q Consensus 9 ~i~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~ 52 (717)
+|...+|..+..|+.+.+..+ ++.+-..+|.+|.+|+.+.+..
T Consensus 10 ~I~~~aF~~c~~L~~i~iP~~-v~~Ig~~aF~~C~~L~~i~~~~ 52 (100)
T 2lz0_A 10 GMDKSLFAGNTVIREITVQPN-IGLLYDGMFSGCTALEKLILTG 52 (100)
T ss_dssp SSCSCTTTTCTTCCCEEECTT-SSCCCTTSSTTCTTCCCEEECC
T ss_pred EecHHHhcCCCCCcEEEcCCc-hheEcHHHHhccCCccEEEEcC
Confidence 344445555555555555543 2224444555555555555443
No 167
>2k1k_A Ephrin type-A receptor 1; EPHA1, receptor tyrosine kinase, dimeric transmembrane domain, ATP-binding, glycoprotein, nucleotide-binding; NMR {Homo sapiens} PDB: 2k1l_A
Probab=28.33 E-value=31 Score=21.18 Aligned_cols=11 Identities=0% Similarity=0.060 Sum_probs=4.1
Q ss_pred HHHhhhhhHhh
Q 005038 681 ITFTTSYVIVI 691 (717)
Q Consensus 681 ~~~~~~~~~~~ 691 (717)
.+++++.++.+
T Consensus 14 AGiVvG~v~gv 24 (38)
T 2k1k_A 14 VAVIFGLLLGA 24 (38)
T ss_dssp HHHHHHHHHHH
T ss_pred eeeehHHHHHH
Confidence 33334433333
Done!