BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 005039
         (717 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|3RIM|A Chain A, Crystal Structure Of Mycobacterium Tuberculosis
           Transketolase (rv1449c)
 pdb|3RIM|B Chain B, Crystal Structure Of Mycobacterium Tuberculosis
           Transketolase (rv1449c)
 pdb|3RIM|C Chain C, Crystal Structure Of Mycobacterium Tuberculosis
           Transketolase (rv1449c)
 pdb|3RIM|D Chain D, Crystal Structure Of Mycobacterium Tuberculosis
           Transketolase (rv1449c)
          Length = 700

 Score = 31.2 bits (69), Expect = 1.9,   Method: Compositional matrix adjust.
 Identities = 36/132 (27%), Positives = 52/132 (39%), Gaps = 7/132 (5%)

Query: 512 SATPG----KLTKEVEQIKEGFVCGRDNVIDFVTSSMKYGCLTDDNSEGGWSQSDIPTIH 567
           S TPG    + T  VE        G  + +    +S     L D ++E G S  D     
Sbjct: 114 SKTPGHPEFRHTPGVEITTGPLGQGLASAVGMAMASRYERGLFDPDAEPGASPFDHYIYV 173

Query: 568 VNSDTVDTEGNENERITQVSIDMKGAKRLTLAINAKEIEDFTFKVDSEELVPRDAKSSIY 627
           + SD    EG  +E  +  ++   G   +    N   IED T     E+     A+   Y
Sbjct: 174 IASDGDIEEGVTSEASSLAAVQQLGNLIVFYDRNQISIEDDTNIALCEDTA---ARYRAY 230

Query: 628 GWHIIEFSGGKN 639
           GWH+ E  GG+N
Sbjct: 231 GWHVQEVEGGEN 242


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.319    0.135    0.399 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 20,167,723
Number of Sequences: 62578
Number of extensions: 808359
Number of successful extensions: 1780
Number of sequences better than 100.0: 1
Number of HSP's better than 100.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 1780
Number of HSP's gapped (non-prelim): 1
length of query: 717
length of database: 14,973,337
effective HSP length: 106
effective length of query: 611
effective length of database: 8,340,069
effective search space: 5095782159
effective search space used: 5095782159
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 55 (25.8 bits)