Query 005039
Match_columns 717
No_of_seqs 319 out of 1219
Neff 6.3
Searched_HMMs 46136
Date Thu Mar 28 17:03:42 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/005039.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/005039hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG2194 Aminopeptidases of the 100.0 3E-116 5E-121 1004.8 47.9 632 1-709 171-834 (834)
2 PF04389 Peptidase_M28: Peptid 99.8 7E-22 1.5E-26 194.9 6.0 143 1-144 34-179 (179)
3 KOG2195 Transferrin receptor a 99.7 3.6E-16 7.7E-21 181.8 12.6 163 1-166 378-552 (702)
4 PRK10199 alkaline phosphatase 99.5 2.9E-13 6.3E-18 146.5 14.2 156 1-161 151-345 (346)
5 COG2234 Iap Predicted aminopep 99.2 2.4E-11 5.3E-16 136.3 10.0 145 1-156 236-392 (435)
6 KOG3946 Glutaminyl cyclase [Po 98.1 4.3E-06 9.4E-11 87.0 6.9 148 1-154 149-332 (338)
7 PF05450 Nicastrin: Nicastrin; 98.0 5.4E-05 1.2E-09 78.8 12.6 138 1-140 32-200 (234)
8 COG4882 Predicted aminopeptida 97.7 0.00029 6.3E-09 75.8 11.2 136 3-164 217-365 (486)
9 PF09940 DUF2172: Domain of un 97.7 0.00031 6.8E-09 76.7 11.3 146 2-160 155-308 (386)
10 PF01546 Peptidase_M20: Peptid 97.2 0.0012 2.6E-08 64.9 7.9 140 1-154 44-187 (189)
11 TIGR03107 glu_aminopep glutamy 96.5 0.019 4E-07 63.5 11.3 137 1-158 186-342 (350)
12 PRK09961 exoaminopeptidase; Pr 96.2 0.038 8.1E-07 61.0 11.6 141 1-157 174-333 (344)
13 PRK09864 putative peptidase; P 96.0 0.057 1.2E-06 59.8 11.5 136 1-157 183-341 (356)
14 COG4310 Uncharacterized protei 95.7 0.052 1.1E-06 58.0 9.2 146 4-160 206-356 (435)
15 COG1363 FrvX Cellulase M and r 94.8 0.25 5.4E-06 54.6 11.6 139 1-159 188-348 (355)
16 TIGR03106 trio_M42_hydro hydro 94.8 0.15 3.2E-06 56.3 9.8 137 1-154 191-339 (343)
17 KOG2657 Transmembrane glycopro 93.5 0.2 4.4E-06 56.9 7.7 140 2-143 210-374 (596)
18 PF05343 Peptidase_M42: M42 gl 93.1 0.21 4.6E-06 53.9 6.9 119 1-136 142-282 (292)
19 TIGR01910 DapE-ArgE acetylorni 92.3 0.19 4.2E-06 55.4 5.5 55 1-56 113-167 (375)
20 PRK09133 hypothetical protein; 91.5 0.21 4.6E-06 57.1 4.8 54 1-55 149-203 (472)
21 PRK08588 succinyl-diaminopimel 90.8 0.35 7.5E-06 53.4 5.5 54 1-55 108-161 (377)
22 TIGR01879 hydantase amidase, h 89.2 0.33 7.1E-06 54.3 3.7 42 1-42 94-140 (401)
23 PRK06133 glutamate carboxypept 89.0 0.72 1.6E-05 51.8 6.2 54 1-56 144-197 (410)
24 PRK08596 acetylornithine deace 88.2 0.66 1.4E-05 52.3 5.3 53 1-56 126-178 (421)
25 PRK06156 hypothetical protein; 87.8 0.69 1.5E-05 53.8 5.2 51 2-55 163-213 (520)
26 TIGR03176 AllC allantoate amid 87.5 0.53 1.2E-05 53.0 4.0 39 1-39 96-139 (406)
27 TIGR01891 amidohydrolases amid 86.5 1 2.2E-05 49.6 5.4 54 1-56 98-151 (363)
28 PRK07318 dipeptidase PepV; Rev 85.5 1.1 2.4E-05 51.2 5.3 43 1-43 126-168 (466)
29 PRK13983 diaminopimelate amino 84.5 2.1 4.5E-05 47.4 6.7 54 1-54 125-180 (400)
30 PRK12893 allantoate amidohydro 84.4 0.85 1.8E-05 51.1 3.6 42 1-42 103-149 (412)
31 PRK07473 carboxypeptidase; Pro 84.2 2 4.3E-05 47.8 6.3 55 1-57 120-174 (376)
32 PRK09104 hypothetical protein; 84.1 1.2 2.7E-05 50.8 4.7 55 1-55 136-190 (464)
33 PRK13799 unknown domain/N-carb 82.7 1 2.2E-05 53.3 3.5 38 1-38 278-320 (591)
34 PRK07338 hypothetical protein; 82.6 2.2 4.9E-05 47.5 6.0 53 1-55 137-189 (402)
35 PRK12890 allantoate amidohydro 82.6 1.1 2.4E-05 50.3 3.6 39 1-39 101-144 (414)
36 PRK12892 allantoate amidohydro 82.3 1.3 2.7E-05 49.6 3.9 41 1-41 101-146 (412)
37 PRK07906 hypothetical protein; 82.3 1.1 2.3E-05 50.6 3.3 42 1-42 113-155 (426)
38 TIGR01883 PepT-like peptidase 82.3 1 2.2E-05 49.3 3.1 40 1-41 108-147 (361)
39 PRK13590 putative bifunctional 82.2 1.1 2.4E-05 53.0 3.5 38 1-38 278-320 (591)
40 PRK09290 allantoate amidohydro 81.3 1.4 3.1E-05 49.4 3.8 42 1-42 100-146 (413)
41 PRK08651 succinyl-diaminopimel 80.8 2.2 4.8E-05 47.3 5.1 52 1-57 122-173 (394)
42 KOG2275 Aminoacylase ACY1 and 80.5 1.9 4E-05 48.3 4.2 54 1-55 137-191 (420)
43 TIGR01886 dipeptidase dipeptid 80.1 1.7 3.7E-05 49.9 4.0 42 1-42 125-166 (466)
44 PRK07079 hypothetical protein; 79.5 2.1 4.5E-05 49.0 4.5 53 2-54 136-189 (469)
45 PRK05469 peptidase T; Provisio 79.4 2.7 5.9E-05 47.0 5.3 39 1-40 148-186 (408)
46 PRK07205 hypothetical protein; 78.9 2.2 4.7E-05 48.5 4.4 42 1-42 124-165 (444)
47 KOG2526 Predicted aminopeptida 78.6 3.1 6.7E-05 46.7 5.1 148 1-152 245-412 (555)
48 TIGR01892 AcOrn-deacetyl acety 78.4 2.9 6.4E-05 45.6 5.1 40 1-42 106-145 (364)
49 PRK13013 succinyl-diaminopimel 78.3 2.9 6.3E-05 46.9 5.1 54 1-55 131-187 (427)
50 PRK12891 allantoate amidohydro 78.1 1.9 4E-05 48.6 3.4 38 1-38 103-145 (414)
51 PRK08201 hypothetical protein; 75.7 5.2 0.00011 45.5 6.2 56 1-56 128-183 (456)
52 TIGR01887 dipeptidaselike dipe 75.2 2.7 5.9E-05 48.0 3.8 41 1-41 114-154 (447)
53 PRK08652 acetylornithine deace 74.6 4.1 8.8E-05 44.2 4.8 49 1-55 95-143 (347)
54 TIGR01880 Ac-peptdase-euk N-ac 74.6 3.9 8.4E-05 45.6 4.7 40 1-40 120-160 (400)
55 PRK08262 hypothetical protein; 74.1 3.2 7E-05 47.7 4.0 40 1-40 162-201 (486)
56 PRK07907 hypothetical protein; 73.5 4.2 9.2E-05 46.2 4.8 52 1-55 132-183 (449)
57 PRK05111 acetylornithine deace 72.1 5.5 0.00012 44.0 5.2 40 1-42 119-158 (383)
58 PRK13009 succinyl-diaminopimel 69.7 4.3 9.3E-05 44.6 3.6 39 1-39 107-146 (375)
59 TIGR01900 dapE-gram_pos succin 68.5 8.3 0.00018 42.8 5.6 56 1-56 111-170 (373)
60 PRK06446 hypothetical protein; 68.1 5.5 0.00012 45.1 4.2 51 1-52 111-161 (436)
61 PLN02693 IAA-amino acid hydrol 67.2 6.4 0.00014 44.9 4.5 40 1-41 144-183 (437)
62 PF04114 Gaa1: Gaa1-like, GPI 65.9 1E+02 0.0022 36.2 13.8 143 1-161 42-229 (504)
63 PRK04443 acetyl-lysine deacety 65.7 8.4 0.00018 42.1 4.9 49 1-55 99-147 (348)
64 TIGR01893 aa-his-dipept aminoa 65.5 5.6 0.00012 45.7 3.6 41 14-57 126-166 (477)
65 TIGR01882 peptidase-T peptidas 65.3 7.1 0.00015 43.9 4.3 38 1-39 150-187 (410)
66 PRK13007 succinyl-diaminopimel 65.0 8.8 0.00019 41.7 4.9 51 1-55 103-155 (352)
67 PRK15026 aminoacyl-histidine d 64.3 9.6 0.00021 44.2 5.2 39 15-56 133-171 (485)
68 PRK08554 peptidase; Reviewed 63.6 8.8 0.00019 43.7 4.7 54 2-57 112-166 (438)
69 PLN02280 IAA-amino acid hydrol 63.2 9.9 0.00022 44.0 5.0 39 1-40 194-232 (478)
70 PRK07522 acetylornithine deace 63.0 9.3 0.0002 42.1 4.6 53 1-55 112-165 (385)
71 PRK13381 peptidase T; Provisio 61.6 7.5 0.00016 43.5 3.6 39 1-40 146-184 (404)
72 PRK00466 acetyl-lysine deacety 61.4 13 0.00027 40.7 5.3 50 1-57 100-149 (346)
73 TIGR01246 dapE_proteo succinyl 59.8 8.4 0.00018 42.3 3.6 39 1-39 104-143 (370)
74 PRK06837 acetylornithine deace 54.8 17 0.00037 41.0 5.0 39 1-39 146-184 (427)
75 PRK06915 acetylornithine deace 54.5 12 0.00027 41.9 3.8 40 1-40 142-181 (422)
76 TIGR01902 dapE-lys-deAc N-acet 52.6 21 0.00046 38.7 5.2 49 1-57 90-138 (336)
77 PRK13004 peptidase; Reviewed 52.1 22 0.00049 39.6 5.4 40 1-40 118-158 (399)
78 PF10190 Tmemb_170: Putative t 49.8 1.5E+02 0.0033 27.4 9.3 49 215-264 32-80 (105)
79 PTZ00371 aspartyl aminopeptida 46.0 1.4E+02 0.003 34.7 10.5 121 15-144 274-445 (465)
80 PRK02813 putative aminopeptida 45.8 71 0.0015 36.6 8.1 119 16-141 252-415 (428)
81 PRK08651 succinyl-diaminopimel 44.4 40 0.00086 37.3 5.8 56 100-160 338-393 (394)
82 COG0624 ArgE Acetylornithine d 41.8 34 0.00073 38.2 4.8 55 1-55 124-180 (409)
83 PRK08596 acetylornithine deace 38.6 53 0.0011 37.0 5.7 56 100-160 363-418 (421)
84 PRK02256 putative aminopeptida 33.3 1.3E+02 0.0028 34.9 7.6 120 14-141 277-449 (462)
85 COG1473 AbgB Metal-dependent a 31.7 57 0.0012 36.9 4.4 52 2-55 112-164 (392)
86 KOG2292 Oligosaccharyltransfer 29.7 4.8E+02 0.01 30.9 11.1 30 326-355 191-222 (751)
87 PRK07338 hypothetical protein; 29.2 86 0.0019 34.9 5.4 56 99-160 344-400 (402)
88 PRK06133 glutamate carboxypept 28.0 78 0.0017 35.5 4.8 58 99-160 352-409 (410)
89 PF12911 OppC_N: N-terminal TM 27.8 69 0.0015 25.3 3.2 36 445-480 8-43 (56)
90 PRK13381 peptidase T; Provisio 27.0 87 0.0019 35.0 4.9 54 99-158 350-403 (404)
91 TIGR03526 selenium_YgeY putati 26.5 94 0.002 34.6 5.1 41 1-41 116-157 (395)
92 PRK07079 hypothetical protein; 26.1 1.8E+02 0.0039 33.3 7.4 57 102-161 402-458 (469)
93 PF05421 DUF751: Protein of un 25.1 2.7E+02 0.0059 23.2 6.1 28 432-459 14-41 (61)
94 PRK05469 peptidase T; Provisio 24.4 1.7E+02 0.0037 32.7 6.7 55 99-159 352-406 (408)
95 PRK08652 acetylornithine deace 23.9 1.3E+02 0.0029 32.4 5.5 55 99-158 291-345 (347)
96 TIGR01880 Ac-peptdase-euk N-ac 23.6 1.4E+02 0.003 33.2 5.7 56 100-159 343-399 (400)
97 PRK13009 succinyl-diaminopimel 22.9 1.5E+02 0.0032 32.5 5.7 53 100-158 322-374 (375)
98 TIGR01246 dapE_proteo succinyl 22.7 1.4E+02 0.0031 32.7 5.5 53 99-157 318-370 (370)
99 PRK07522 acetylornithine deace 22.6 1.2E+02 0.0025 33.4 4.9 54 100-158 331-384 (385)
100 TIGR03320 ygeY M20/DapE family 20.7 1.4E+02 0.0031 33.1 5.1 40 1-40 116-156 (395)
101 PRK06915 acetylornithine deace 20.5 1.7E+02 0.0036 32.8 5.6 56 100-159 364-419 (422)
No 1
>KOG2194 consensus Aminopeptidases of the M20 family [Posttranslational modification, protein turnover, chaperones; General function prediction only]
Probab=100.00 E-value=2.5e-116 Score=1004.83 Aligned_cols=632 Identities=30% Similarity=0.519 Sum_probs=548.5
Q ss_pred ChHHHHHHhcCCCCCCceEEEEecCccccCccchHHHHHhCCCccceeEEEEeccCCCCCcceEEEeCCChHHHHHHHHh
Q 005039 1 MLELARVMSQWAHEFKNAVIFLFNTGEEEGLNGAHSFVTQHPWSTTIRVAVDLEAMGIGGRSALFQAGPNLWAVENFAAV 80 (717)
Q Consensus 1 mLElaR~l~~~~~~p~rtIiFlf~~aEE~GLlGS~~Fv~~hp~~~~i~a~INlD~~G~gG~~~lf~~g~~~~L~~~y~~~ 80 (717)
|||++|++++..+..+|+|+|+||||||++|+|||+|++||||+++|+++||||++|+|||+++||+||++|+++.|.++
T Consensus 171 mLe~lRv~s~~~~~l~~~vVFLfNgaEE~~L~gsH~FItQH~w~~~~ka~INLea~GsGGreiLFQagp~~wl~k~Y~~~ 250 (834)
T KOG2194|consen 171 MLEALRVLSKSDKLLTHSVVFLFNGAEESGLLGSHAFITQHPWSKNIKAVINLEAAGSGGREILFQAGPNHWLLKAYLQA 250 (834)
T ss_pred HHHHHHHhhcCCCcccccEEEEecCcccchhhhcccceecChhhhhhheEEeccccCcccceeEEecCCchHHHHHHHhh
Confidence 79999999998888899999999999999999999999999999999999999999999999999999966999999999
Q ss_pred cCCCCCccccccccccCCCCCCCChHhhhhcCCCcEEEEeeeCCCCCCCCCCCCcCCCCHhHHHHHHHHHHHHHHHHhcC
Q 005039 81 AKYPSGQIIGQDLFASGVFETATDFQVYTEVAGLSGLDFAYTDKSAVYHTKNDRLDLLKPGSLQHLGENMLDFLLQTASS 160 (717)
Q Consensus 81 a~~P~~~~~~~~~f~~g~ipsdTD~~~F~~~~GIPgLd~a~~~~~~~YHT~~Dt~d~i~~~slq~~g~~~l~lv~~la~~ 160 (717)
+|||++++++||+||+|++||||||++|++|+|+||+|+|++.|++.|||++|.+++++++++||+|||++++++.+||+
T Consensus 251 ~phPf~stlgee~Fq~g~IpSdTDfrif~eyg~l~GLD~A~~~Ng~vYHTk~D~~~~i~~gs~q~tGen~L~~v~~lan~ 330 (834)
T KOG2194|consen 251 APHPFASTLGEELFQSGIIPSDTDFRIFREYGHLPGLDMAFVKNGYVYHTKYDGIQYIPPGSLQHTGENILALVRSLANS 330 (834)
T ss_pred CCCchhhhhHHHhhhcCcCccccchHHHHHhCCcccceeeeeeccceEEeecccccccCcchhhhhhhHHHHHHHHHhch
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred CCCCCCCCccccCCCCCCCeEEecccCceEEEeechhHHHHHHHHHHHHHHHHHHHhhccchhhHHHHHHHHHHHHHHHH
Q 005039 161 TSIPKGNAVEEEGKTVHETGVYFDILGKYMVLYHQHFANMLHNSVILQSLLIWTASLVMGGYPAAVSLALTCLSAILMLV 240 (717)
Q Consensus 161 ~~l~~~~~~~~~~~~~~~~~vyFd~lg~~~v~y~~~~~~~l~~~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 240 (717)
++.+ .+.++.+ +||||++|++|+.|+++++++||+++. +.++ ....+.+.+.++++.++++.++++++
T Consensus 331 -el~~------~~~~~~g-~vyfdv~g~~~~~y~~~~~~iLNi~i~---~~i~-l~~~~~g~~~~~~f~~~~~~~i~s~~ 398 (834)
T KOG2194|consen 331 -ELDN------STERSKG-TVYFDVVGKYFLAYSESTGVILNITIC---ISIW-LMSLRSGSSQLGKFILACLLQILSIV 398 (834)
T ss_pred -hhcc------ccccCCC-ceehhhhhhhhheeehhhhhhhhhhhh---hhhh-hhhhcccchhhhhHHHHHHHHHHHHH
Confidence 5432 3445566 999999999999999999999993322 2222 33344443458899999999999999
Q ss_pred HHHHHHHHHHhhhccCCCCCceeeechhHHHHHhHHHHHHHHHHHHHHHHHHHHHHhhhhccCCCCcchhHHHHHHHHHH
Q 005039 241 LSISFSVVIAFILPQISSSPVPYVASPWLTVGLFAAPAFLGALTGQHLGYIVLKAYLANQYSKGMQLSPVHQAALVKLEA 320 (717)
Q Consensus 241 ~~~~~~~~vA~~~~~~~~~~~sw~s~~~l~~gLy~~p~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 320 (717)
+++++++++|++++.++ .+|+||++||+++|||.||+++|+.++|.++ ....|+ ++ +...+.
T Consensus 399 ~~~~l~~~~a~~l~~v~-l~~sw~s~p~l~~~ly~~p~~~gl~~~~~~y-~~~~~~------~~----------~~~~~~ 460 (834)
T KOG2194|consen 399 VAIGLPVLVALFLDWVG-LPLSWFSNPWLLLGLYYLPSLFGLAILQALY-AKRSKR------HS----------LEYLQH 460 (834)
T ss_pred HHHhhHHHHHHHhhccc-ccceeecchHHHHHHHHhHHHHHhhHHHHHH-Hhhccc------cc----------cchhhH
Confidence 99999999999999984 6999999999999999999999999999873 211111 01 112345
Q ss_pred HHHHHHHhHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHHHHHHHhhccccCCCchHHHHHHHHhHHhHHHHHHHHHHH
Q 005039 321 ERWLFKSGFLQWLILLALGNYYKIGSTYMALVWLVPPAFAYGFLEATLTPVRLTRPLKLATLLLGLAVPVLVSAGNIIRL 400 (717)
Q Consensus 321 ~~~~~~~~~~~~~~l~~~~t~~~i~S~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~~~~~l~~~~ 400 (717)
+++.+|+ +|+++++++|++||||+|++++|+++++++ .+++....+|.++..|..++++||+.|+.+.+|.++++
T Consensus 461 ~ql~~h~---~l~~l~~~~t~y~I~S~y~~~~~~~~~v~~--~~~~~~~~l~~~~~~~~~~~~i~~~~p~~~~ay~~~~~ 535 (834)
T KOG2194|consen 461 DQLLLHS---LLSILLIIMTYYGIRSAYLPLLLLLFYVIS--YLLNTLTILHLCGTLYLITLLICQVGPFLFAAYSTYSL 535 (834)
T ss_pred HHHHHHH---HHHHHHHHheecccchhHHHHHHHHHHHHH--HHHhhceeeccCCceeeeeeeeeehHhHHHHHHHHHHH
Confidence 6777786 788889999999999999999999999998 55778888899999999999999999999999999999
Q ss_pred HHHHHhhccccCCCCCCCCccchhHHHHHHHHHHHHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHhcCCCCCCCc
Q 005039 401 ANVLVATLVRFDRNPGGTPEWLGNVIFAVVIAVVSCLTLVYLLSYVHLSGAKGPIAFASFILVGLSIIMVSSGIIPPFSE 480 (717)
Q Consensus 401 ~~~~ip~~gR~g~~~~~~Pd~~~D~iIA~l~al~t~l~~~fliPli~l~~~~~~i~~~L~~v~~i~~~~~~~~~~fPf~~ 480 (717)
+.+|+|||||+|.+. ||| .+||.++++++.+.++|++|++|+||+++.|+.+++.++.+++++++|.++|||++
T Consensus 536 ~~~fipm~Gr~g~~~--nPd----~~i~~~~~~~~~l~~~f~i~l~~~fr~~~~i~~~l~~I~~~~~~i~~T~~~fPy~~ 609 (834)
T KOG2194|consen 536 VRTFIPMMGRFGNAS--NPD----LSISFLNAFGANLIVGFLIPLVHLFRRSKSIILGLFGITAVILIIASTSIGFPYRP 609 (834)
T ss_pred HHeeeccccccCCCC--Cch----HHHHHHHHHHHHhhHHHHHHHHHHHcCCchhHHHHHHHHHHHHHHHhcCCcCCccc
Confidence 999999999999754 895 99999999999999999999999999999999999888888888889999999997
Q ss_pred Cc-cceeEEEEEEeccCCCCCC---CCCCccccccccC--------CCCchhh---HHhcccCccCCCCccccccccccc
Q 005039 481 ET-ARAVNIVHIVDASGKFGGK---QEPSSYIALYSAT--------PGKLTKE---VEQIKEGFVCGRDNVIDFVTSSMK 545 (717)
Q Consensus 481 ~~-~~Rv~v~H~~r~~~~~~~~---~D~~~~~~l~~~~--------~~~l~~~---~~~C~~el~CG~p~~~~~~~~~~y 545 (717)
++ ++|+.++|++|++|+.++. +|+++++...|.- -.+++++ ..+|+++++||+| +|
T Consensus 610 ~~~~~r~~~lH~~rtf~~~~~~~~~~ds~~~i~~~D~r~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~p---------~y 680 (834)
T KOG2194|consen 610 KTTVQRVPVLHVRRTFYDRDGTSSQNDSGYFINSQDRRGAEVLPFTKSNLTDLSSVQADCDDEMMCGMP---------VY 680 (834)
T ss_pred cccceeEEEEecccceecccCceeecccceeeeecccccccCCcchhhcccccccccccccccccCCce---------ee
Confidence 75 6799999999999987754 4666666544432 1122222 2569999999996 87
Q ss_pred ccceeccCCCCccCCCC-------CCeeeeecccccccCCCCcceEEEEEEecCCCeEEEEEece---eecCceeecCCc
Q 005039 546 YGCLTDDNSEGGWSQSD-------IPTIHVNSDTVDTEGNENERITQVSIDMKGAKRLTLAINAK---EIEDFTFKVDSE 615 (717)
Q Consensus 546 ~~~~~~~~~~~~Wlp~~-------~p~l~l~s~~~~~~~~~~~r~~r~~f~l~gp~~~sl~I~p~---~l~~WSf~~~~~ 615 (717)
. |.+.+.+++|+|++ +|++.+++|+. ++++ ..|++|+++|+|||+++|+|. ++++||| .++
T Consensus 681 ~--w~~~~~~~~~vp~~~~v~~~~~~~l~l~sk~~----~~~~-~~r~~~~i~~~d~~s~~i~p~~d~~~~~wsf--~~~ 751 (834)
T KOG2194|consen 681 N--WIKPREQSLWVPNPEPVIGPYPPNLKLLSKTS----LDNG-NLRYEFSITGTDHISLFISPLNDVKVLDWSF--TTS 751 (834)
T ss_pred e--ccccCccceEecCCccccCCCCceEEEeeccc----cCCC-ceEEEEEEeccCceEEEEEecCCceEEEEec--cCC
Confidence 5 99999999999995 36899999965 4434 578999999999999999994 9999999 444
Q ss_pred ccccCCCCCCCCccEEEEEEec-CCCceEEEEEEEeccccccccCCCCCCCCCCCeEEEe------cCCCCCCHHHHHHH
Q 005039 616 ELVPRDAKSSIYGWHIIEFSGG-KNAASKFEIALYWAKNSTRAAGNSNGKEKQQPLVKLR------TDFDRLTPKTERVL 688 (717)
Q Consensus 616 ~~~p~~~~~~~~~~y~i~~s~G-~~~P~~F~lel~~~~~~~~~~~~~~~~~~~~p~~~l~------~~~~~~t~~~~~fl 688 (717)
|..+ +.+ +|+||++|| ++.|++||+|+++. ++ .+++| +|++ +|.+++||++++|+
T Consensus 752 ---~~~~--~~~-~~~i~~~yg~~~~p~~F~lel~~~----------~~-~~~v~-~k~~~~~h~~~~~~~~t~~~~~~~ 813 (834)
T KOG2194|consen 752 ---PLTE--NKT-PYHIYFSYGLDSTPLNFWLELEKE----------EG-VTDVP-FKLGVSAHYIHDLELITPEYKEFL 813 (834)
T ss_pred ---cccc--cCC-ceEEEEEeecCCCCceEEEEEeec----------cC-ccCCc-eEEeeeeeeccchhhcCHHHHHHH
Confidence 2333 223 499999999 56999999999997 23 67888 8888 57899999999999
Q ss_pred hcCCCCcccccccCCCccccc
Q 005039 689 SKLPPWCSLFEGSISSQPLSF 709 (717)
Q Consensus 689 ~~fP~wa~~~~~~~~~~~~~~ 709 (717)
++|||||+.++||+|+.+..|
T Consensus 814 ~~lP~~~~~~~~~~~~~~~~~ 834 (834)
T KOG2194|consen 814 ETLPSWAATVDWSTSYESWIF 834 (834)
T ss_pred HhCCchhhccccccchhheeC
Confidence 999999999999999987653
No 2
>PF04389 Peptidase_M28: Peptidase family M28; InterPro: IPR007484 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Metalloproteases are the most diverse of the four main types of protease, with more than 50 families identified to date. In these enzymes, a divalent cation, usually zinc, activates the water molecule. The metal ion is held in place by amino acid ligands, usually three in number. The known metal ligands are His, Glu, Asp or Lys and at least one other residue is required for catalysis, which may play an electrophillic role. Of the known metalloproteases, around half contain an HEXXH motif, which has been shown in crystallographic studies to form part of the metal-binding site []. The HEXXH motif is relatively common, but can be more stringently defined for metalloproteases as 'abXHEbbHbc', where 'a' is most often valine or threonine and forms part of the S1' subsite in thermolysin and neprilysin, 'b' is an uncharged residue, and 'c' a hydrophobic residue. Proline is never found in this site, possibly because it would break the helical structure adopted by this motif in metalloproteases []. This domain is found in metallopeptidases belonging to the MEROPS peptidase family M28 (aminopeptidase Y, clan MH) []. They also contain a transferrin receptor-like dimerisation domain (IPR007365 from INTERPRO) and a protease-associated PA domain (IPR003137 from INTERPRO).; GO: 0008233 peptidase activity, 0006508 proteolysis; PDB: 3BXM_A 2C6P_A 1Z8L_C 3SJF_A 3BHX_A 2C6G_A 3D7F_A 2XEG_A 3BI1_A 2C6C_A ....
Probab=99.85 E-value=7e-22 Score=194.85 Aligned_cols=143 Identities=30% Similarity=0.486 Sum_probs=108.4
Q ss_pred ChHHHHHHhcCCCCCCceEEEEecCccccCccchHHHHHh-CCCccceeEEEEeccCCCCCcceEEEeCC-ChHHHHHHH
Q 005039 1 MLELARVMSQWAHEFKNAVIFLFNTGEEEGLNGAHSFVTQ-HPWSTTIRVAVDLEAMGIGGRSALFQAGP-NLWAVENFA 78 (717)
Q Consensus 1 mLElaR~l~~~~~~p~rtIiFlf~~aEE~GLlGS~~Fv~~-hp~~~~i~a~INlD~~G~gG~~~lf~~g~-~~~L~~~y~ 78 (717)
|||+||.|++.+.+|+|+|+|+||+|||.|+.||++|+++ +.+.+++.++||+|++|.+++....+..+ .++..+.+.
T Consensus 34 lLelAr~l~~~~~~~~~~i~fv~~~~EE~gl~GS~~~~~~~~~~~~~~~~~inlD~~g~~~~~~~~~~~~~~~~~~~~~~ 113 (179)
T PF04389_consen 34 LLELARVLKELKPQPKRTIRFVFFDGEEQGLLGSRAFVEHDHEELDNIAAVINLDMIGSGDPTVYSEGSPSLPSRLEAYL 113 (179)
T ss_dssp HHHHHHHHHHSTHSSSEEEEEEEESSGGGTSHHHHHHHHHHHCHHHHEEEEEEECSSBSSSSEEEEEEGGGHHHHHHHHH
T ss_pred HHHHHHHHHHhhcccCccEEEEEecccccCccchHHHHHhhhcccccceeEEeccccccCcccceeeeeccccchhhhhh
Confidence 6999999998777889999999999999999999999963 35678999999999999998888888766 234222222
Q ss_pred HhcCCCCCccccccccccCCCCCCCChHhhhhcCCCcEEEEeeeC-CCCCCCCCCCCcCCCCHhHHH
Q 005039 79 AVAKYPSGQIIGQDLFASGVFETATDFQVYTEVAGLSGLDFAYTD-KSAVYHTKNDRLDLLKPGSLQ 144 (717)
Q Consensus 79 ~~a~~P~~~~~~~~~f~~g~ipsdTD~~~F~~~~GIPgLd~a~~~-~~~~YHT~~Dt~d~i~~~slq 144 (717)
+....+.......+.......+..+||.+|.. .|||++.+.... ..+.|||+.||+|++++++||
T Consensus 114 ~~~~~~~~~~~~~~~~~~~~~~~~sD~~~F~~-~gip~~~~~~~~~~~~~~Ht~~Dt~~~~~~~~l~ 179 (179)
T PF04389_consen 114 SSFKQPYGSSLGPDVPPEKPTFGGSDHYPFSK-AGIPAVTLSSTDGYNPYYHTPEDTPDNLDPDTLQ 179 (179)
T ss_dssp HHHHHHHHCHTSSECEEEESSTTSSTCHHHHT-TT-EEEEEEESSSSGTTTTSTT-SGGGC-HHHH-
T ss_pred hhhhhhhhcccccccccccCCCCCCCcHhhhc-CCEeEEEEEecCCCCCCCCCcccChhhcCCccCC
Confidence 22222322222333332233567799999997 999999998877 678999999999999999997
No 3
>KOG2195 consensus Transferrin receptor and related proteins containing the protease-associated (PA) domain [Posttranslational modification, protein turnover, chaperones; Inorganic ion transport and metabolism; General function prediction only]
Probab=99.66 E-value=3.6e-16 Score=181.81 Aligned_cols=163 Identities=20% Similarity=0.278 Sum_probs=122.0
Q ss_pred ChHHHHHHh---cCCCCCCceEEEEecCccccCccchHHHHHhCC--CccceeEEEEeccCCCCCcceEEEeCC-ChHHH
Q 005039 1 MLELARVMS---QWAHEFKNAVIFLFNTGEEEGLNGAHSFVTQHP--WSTTIRVAVDLEAMGIGGRSALFQAGP-NLWAV 74 (717)
Q Consensus 1 mLElaR~l~---~~~~~p~rtIiFlf~~aEE~GLlGS~~Fv~~hp--~~~~i~a~INlD~~G~gG~~~lf~~g~-~~~L~ 74 (717)
|+|++|+++ +.+|+|+|+|+|++|||||.||+||..|+++|. ...++.++||+|+++.|...+..++.| -..++
T Consensus 378 Ll~i~~~~~~~~k~gwrP~RtI~F~sWdAeEfGliGStE~~E~~~~~L~~~av~yin~d~~~~~~~~l~~~~~PlL~~li 457 (702)
T KOG2195|consen 378 LLEIARALSKLKKRGWRPRRTILFASWDAEEFGLLGSTEWAEEYLKNLKSRAVVYINVDNAVLGDYTLHVKTTPLLTDLI 457 (702)
T ss_pred HHHHHHHHHHHHHcCCCccceEEEEEccchhccccccHHHHHHHHHHhhheeEEEEeccccccCCceeEEecCccHHHHH
Confidence 589999986 458999999999999999999999999999885 357899999999999886555555444 23333
Q ss_pred HHHHHhcCCCCCccccccccccCCCCCCCChHhhhhcCCCcEEEEeeeCCCCCCCCCCCCcCCC----CHh--HHHHHHH
Q 005039 75 ENFAAVAKYPSGQIIGQDLFASGVFETATDFQVYTEVAGLSGLDFAYTDKSAVYHTKNDRLDLL----KPG--SLQHLGE 148 (717)
Q Consensus 75 ~~y~~~a~~P~~~~~~~~~f~~g~ipsdTD~~~F~~~~GIPgLd~a~~~~~~~YHT~~Dt~d~i----~~~--slq~~g~ 148 (717)
+.-.+..+.|......+.+ ...+++|||..|-.+.|||++++++....+.|||.+||++++ |+. ....++.
T Consensus 458 ~~~~k~~~~p~~~~~~~~v---~~~g~~Sd~~~F~~~~GIpsv~~~f~~~yP~yhs~~dt~~~~~k~~D~~~~~~~~~a~ 534 (702)
T KOG2195|consen 458 EEAAKSVLSPDKGDQSNRV---LSLGGGSDYASFLQFAGIPSVDFAFNRTYPFYHSTYDTYEWLDKLLDPKFKQHLAAAG 534 (702)
T ss_pred HHHHhccCCCCccccceeE---eccCCCCcchhhccccCcceeeeeecCCcceeecccCcHHHHHHhcchhHHHHHHHHH
Confidence 3333334555543222212 224899999999999999999999999889999999996654 444 3444566
Q ss_pred HHHHHHHHHhcCCCCCCC
Q 005039 149 NMLDFLLQTASSTSIPKG 166 (717)
Q Consensus 149 ~~l~lv~~la~~~~l~~~ 166 (717)
.+...+..++++..+|.+
T Consensus 535 ~~~~~~l~l~~d~llPfd 552 (702)
T KOG2195|consen 535 VLGLELLILADDPLLPFD 552 (702)
T ss_pred HHHHHHHHHhcCccccCc
Confidence 666677777776667754
No 4
>PRK10199 alkaline phosphatase isozyme conversion aminopeptidase; Provisional
Probab=99.48 E-value=2.9e-13 Score=146.50 Aligned_cols=156 Identities=19% Similarity=0.263 Sum_probs=107.6
Q ss_pred ChHHHHHHhcCCCCCCceEEEEecCccccCccchHHHHHhCCC--ccceeEEEEeccCCCCCcceEEEeCC-ChH-H---
Q 005039 1 MLELARVMSQWAHEFKNAVIFLFNTGEEEGLNGAHSFVTQHPW--STTIRVAVDLEAMGIGGRSALFQAGP-NLW-A--- 73 (717)
Q Consensus 1 mLElaR~l~~~~~~p~rtIiFlf~~aEE~GLlGS~~Fv~~hp~--~~~i~a~INlD~~G~gG~~~lf~~g~-~~~-L--- 73 (717)
|||+||+|++ .+++++|+|+++++||.|+.||++|+++++. .+++.++||+||++.| ....+..|. .+. +
T Consensus 151 lLe~ar~l~~--~~~~~~I~fv~~~~EE~Gl~GS~~~~~~~~~~~~~~~~~~iNlD~~~~~-d~~~~~~g~~~~~~~~~~ 227 (346)
T PRK10199 151 MLELAERLKN--VPTEYGIRFVATSGEEEGKLGAENLLKRMSDTEKKNTLLVINLDNLIVG-DKLYFNSGVNTPEAVRKL 227 (346)
T ss_pred HHHHHHHHhh--CCCCCcEEEEEECCcccCcHHHHHHHHhcCccchhcEEEEEEeccCCCC-CceEEecCCCcHHHHhHH
Confidence 6999999985 4578999999999999999999999977553 4689999999999875 556666664 222 2
Q ss_pred ----HHHHHHhcCCCCC-ccccccccccCCCCCCCChHhhhhcCCCcEEEEeee-------------------CCCCCCC
Q 005039 74 ----VENFAAVAKYPSG-QIIGQDLFASGVFETATDFQVYTEVAGLSGLDFAYT-------------------DKSAVYH 129 (717)
Q Consensus 74 ----~~~y~~~a~~P~~-~~~~~~~f~~g~ipsdTD~~~F~~~~GIPgLd~a~~-------------------~~~~~YH 129 (717)
....++....+.. ....+..+..| ....+||.+|.+ .|||.+.+... .++..+|
T Consensus 228 ~~d~~~~~a~~~g~~~~~~~~~~~~~p~g-~~~rSDH~~F~~-~GIP~l~~~a~n~~~g~~d~~~q~~~~~~~~~g~~~h 305 (346)
T PRK10199 228 TRDRALAIARRHGIAATTNPGLNKNYPKG-TGCCNDAEVFDK-AGIPVLSVEATNWNLGNKDGYQQRAKTAAFPAGNSWH 305 (346)
T ss_pred HHHHHHHHHHHcCCccccCCCccccccCC-CcCCcccHHHHh-cCCCeEEeeccccccCCcccceecccCccCCCCcccc
Confidence 1111111111110 01112222233 234689999999 99999987321 1245789
Q ss_pred -CCCCCcCCCCH-------hHHHHHHHHHHHHHHHHhcCC
Q 005039 130 -TKNDRLDLLKP-------GSLQHLGENMLDFLLQTASST 161 (717)
Q Consensus 130 -T~~Dt~d~i~~-------~slq~~g~~~l~lv~~la~~~ 161 (717)
|.+|+.|+++. ..+....+.++.++.+||+..
T Consensus 306 ~~~~d~~~~l~~~~pgri~~~~~~~~~~~~~~~~~~~~~~ 345 (346)
T PRK10199 306 DVRLDNQQHIDKALPGRIERRCRDVVRIMLPLVKELAKAS 345 (346)
T ss_pred CcCcchHHHHHHhcchHHHHHHHhHHHHHHHHHHHHhccC
Confidence 89999999875 245557778888999998753
No 5
>COG2234 Iap Predicted aminopeptidases [General function prediction only]
Probab=99.23 E-value=2.4e-11 Score=136.31 Aligned_cols=145 Identities=26% Similarity=0.337 Sum_probs=98.6
Q ss_pred ChHHHHHHhcCCCCCCceEEEEecCccccCccchHHHHHhCC--CccceeEEEEeccCCCCCcceEEE---eCCC--hHH
Q 005039 1 MLELARVMSQWAHEFKNAVIFLFNTGEEEGLNGAHSFVTQHP--WSTTIRVAVDLEAMGIGGRSALFQ---AGPN--LWA 73 (717)
Q Consensus 1 mLElaR~l~~~~~~p~rtIiFlf~~aEE~GLlGS~~Fv~~hp--~~~~i~a~INlD~~G~gG~~~lf~---~g~~--~~L 73 (717)
|||+||+|+. .+|+|+|+|+++++||.||.||++|++++. ..+.+.++||+||.|..++.-.++ .+.. ...
T Consensus 236 llEiAr~l~~--~~p~~~v~f~~~~aEE~Gl~GS~~~~~~~~~~~~~~~~~viN~Dm~g~~~~~~~~~~~~~~~~~~~~~ 313 (435)
T COG2234 236 LLELARVLKG--NPPKRTVRFVAFGAEESGLLGSEAYVKRLSKDLDKKIALVINLDMLGSPNPTPTLILYGNGLERVPPG 313 (435)
T ss_pred HHHHHHHHhc--CCCCceEEEEEecchhhcccccHHHHhcCCcchhhhhheEEecccccCCCCCcceEEeccCCccccch
Confidence 6999999996 459999999999999999999999996554 256788899999999976332222 2211 111
Q ss_pred HHHHHHhcCCCCCccccccccccCCCCCCCChHhhhhcCCCcEEEEeeeCCC-----CCCCCCCCCcCCCCHhHHHHHHH
Q 005039 74 VENFAAVAKYPSGQIIGQDLFASGVFETATDFQVYTEVAGLSGLDFAYTDKS-----AVYHTKNDRLDLLKPGSLQHLGE 148 (717)
Q Consensus 74 ~~~y~~~a~~P~~~~~~~~~f~~g~ipsdTD~~~F~~~~GIPgLd~a~~~~~-----~~YHT~~Dt~d~i~~~slq~~g~ 148 (717)
.....+...++... .+. ......+||.+|.+ .|+|++.+...... ..+||..|+ ++ +...+++.+.
T Consensus 314 ~~~~~~~~~~~~~~-----~~~-~~~~~~sd~~~f~~-~gi~~~~~~~~~~~~~~~~~~~~t~~d~-~~-d~~~~~~~~~ 384 (435)
T COG2234 314 LRAVAALIGRPVDP-----STV-QDFDPRSDHYPFTE-AGIPSLFLFSGAPGGVEAVAWGHTAADT-DK-DLSTLDQHGD 384 (435)
T ss_pred HHHHHHHHHhhccc-----ccc-CCCCCCCcchhhhh-cCCcceeeeecCCccccccccccccccc-cc-chhhhcccch
Confidence 21111111112211 111 12345678999999 99999887664443 489999999 88 8888888775
Q ss_pred HHHHHHHH
Q 005039 149 NMLDFLLQ 156 (717)
Q Consensus 149 ~~l~lv~~ 156 (717)
.+.+....
T Consensus 385 ~~~~~~~~ 392 (435)
T COG2234 385 AVAATLVL 392 (435)
T ss_pred hhhhhhhh
Confidence 55444433
No 6
>KOG3946 consensus Glutaminyl cyclase [Posttranslational modification, protein turnover, chaperones]
Probab=98.13 E-value=4.3e-06 Score=87.00 Aligned_cols=148 Identities=20% Similarity=0.302 Sum_probs=99.6
Q ss_pred ChHHHHHHhcC----CCCCCceEEEEecCccc--------cCccchHHHHHh------CC-----CccceeEEEEeccCC
Q 005039 1 MLELARVMSQW----AHEFKNAVIFLFNTGEE--------EGLNGAHSFVTQ------HP-----WSTTIRVAVDLEAMG 57 (717)
Q Consensus 1 mLElaR~l~~~----~~~p~rtIiFlf~~aEE--------~GLlGS~~Fv~~------hp-----~~~~i~a~INlD~~G 57 (717)
|||+||++.+. ...++-++..+|+|||| ..+.||++.+++ ++ ..+.+..++=+|-.|
T Consensus 149 ll~laq~l~~~~~~~~~~s~lsL~LvFFDGEEAf~eW~p~DSlYGsRhLA~~~~sw~~~~~r~~~~ld~idl~vLldllg 228 (338)
T KOG3946|consen 149 LLNLAQALDKILCSKVSASQLSLQLVFFDGEEAFEEWGPEDSLYGSRHLAAKWESWPHSGIRGDLLLDGIDLLVLLDLLG 228 (338)
T ss_pred HHHHHHHHHHHHhcccCcCceeEEEEEeccHHHHhhcCCccccchHHHHHHHHhccCCCCCccccccccchHhhhHHHhc
Confidence 68999998542 23567889999999998 479999999977 12 235677788888888
Q ss_pred CCCcce--EEEeCCChHHHHH------HHHh---cCCCCCccccccccccCCCC--CCCChHhhhhcCCCcEEEEeeeCC
Q 005039 58 IGGRSA--LFQAGPNLWAVEN------FAAV---AKYPSGQIIGQDLFASGVFE--TATDFQVYTEVAGLSGLDFAYTDK 124 (717)
Q Consensus 58 ~gG~~~--lf~~g~~~~L~~~------y~~~---a~~P~~~~~~~~~f~~g~ip--sdTD~~~F~~~~GIPgLd~a~~~~ 124 (717)
+.++.. .|.. ++.|..+. .+++ +.++ .....||.|... -+.||.+|-+ .|+|-+...-..-
T Consensus 229 a~~p~f~~~~~~-t~~wF~Rl~~iE~~l~~~g~l~s~r----~~~~~Fq~~~~~~~veDDHiPFlr-rgVPVLHlI~~pF 302 (338)
T KOG3946|consen 229 APNPTFYNFFPN-TDRWFHRLQSIEGELALLGLLASHR----LPPRYFQPGGLSSVVEDDHIPFLR-RGVPVLHLIPVPF 302 (338)
T ss_pred CCChhHhhcCcc-hHHHHHHHHHHHHHHHHHHHHHhcc----CCchhccccCccccccCCcchhhh-cCCceEEecCCCC
Confidence 876553 2222 23443221 1111 1122 111234444321 2469999999 9999999876666
Q ss_pred CCCCCCCCCCcCCCCHhHHHHHHHHHHHHH
Q 005039 125 SAVYHTKNDRLDLLKPGSLQHLGENMLDFL 154 (717)
Q Consensus 125 ~~~YHT~~Dt~d~i~~~slq~~g~~~l~lv 154 (717)
..++||+.|+..++|..+..|++-.+--.+
T Consensus 303 PsvWHt~dD~e~nldy~tt~~~~lilr~Fv 332 (338)
T KOG3946|consen 303 PSVWHTPDDNERNLDYATTDNLALIIRVFV 332 (338)
T ss_pred cccccCccchhhcCCchhHHHHHHHHHHHH
Confidence 689999999999999999988765554443
No 7
>PF05450 Nicastrin: Nicastrin; InterPro: IPR008710 Nicastrin and presenilin are two major components of the gamma-secretase complex, which executes the intramembrane proteolysis of type I integral membrane proteins such as the amyloid precursor protein (APP) and Notch. Nicastrin is synthesised in fibroblasts and neurons as an endoglycosidase-H-sensitive glycosylated precursor protein (immature nicastrin) and is then modified by complex glycosylation in the Golgi apparatus and by sialylation in the trans-Golgi network (mature nicastrin) [].; GO: 0016485 protein processing, 0016021 integral to membrane
Probab=98.02 E-value=5.4e-05 Score=78.78 Aligned_cols=138 Identities=20% Similarity=0.318 Sum_probs=89.6
Q ss_pred ChHHHHHHhcC---CCCCCceEEEEecCccccCccchHHHHHh-----CC--------C-ccceeEEEEeccCCCCCcce
Q 005039 1 MLELARVMSQW---AHEFKNAVIFLFNTGEEEGLNGAHSFVTQ-----HP--------W-STTIRVAVDLEAMGIGGRSA 63 (717)
Q Consensus 1 mLElaR~l~~~---~~~p~rtIiFlf~~aEE~GLlGS~~Fv~~-----hp--------~-~~~i~a~INlD~~G~gG~~~ 63 (717)
+|++||+|++. ....+|.|+|+|++||..|-.||+.|+.+ .| . .++|..+|-++.+|..+..-
T Consensus 32 LLaaA~aL~~~~~~~~~~~knV~F~~F~GEs~dYiGS~R~vyDm~~~~f~~~~~~~~~i~~~~I~~~IElgqvg~~~~~~ 111 (234)
T PF05450_consen 32 LLAAAEALSKLLPDSSNLNKNVLFAFFNGESFDYIGSSRFVYDMQNGNFPSDSLQFQPISLDNIDSVIELGQVGLSNSSG 111 (234)
T ss_pred HHHHHHHHHHhhhccccccCcEEEEEecCccccccchHHHHHHHHcCcCcccccccccccHHHCCEEEEeeccCCCCCCC
Confidence 58899999754 24679999999999999999999999854 12 1 25899999999999876532
Q ss_pred EEEe--CC--C---hHHHHHHHHhcCCCC--Cccccc-cccccCCCCCCCChHhhhh-cCCCcEEEEeeeCC---CCCCC
Q 005039 64 LFQA--GP--N---LWAVENFAAVAKYPS--GQIIGQ-DLFASGVFETATDFQVYTE-VAGLSGLDFAYTDK---SAVYH 129 (717)
Q Consensus 64 lf~~--g~--~---~~L~~~y~~~a~~P~--~~~~~~-~~f~~g~ipsdTD~~~F~~-~~GIPgLd~a~~~~---~~~YH 129 (717)
+|.- ++ + ..+.+...+..+.+- .....+ .....++.|+. ...|.+ ..++||+-++-.+. ...||
T Consensus 112 l~~Hvd~~~~~~~~~~~~~~l~~~~~s~~~~~~~~~~~~~~~~~LPPsS--~~sFLr~~~~i~~vVLtd~~~~f~N~~y~ 189 (234)
T PF05450_consen 112 LYAHVDSPSNSSVANQVDEALDAAAKSLASSNIVIKKASSSNPPLPPSS--LQSFLRKDPNIPGVVLTDHDSQFTNKYYN 189 (234)
T ss_pred EEEEecCCccchhhHHHHHHHHHHHHhccccccceeccccCCCCCCcch--HHHHHccCCCCCEEEecCCCcccccCCcc
Confidence 4442 22 1 233444433322221 111111 12223455543 666655 34799998765544 35899
Q ss_pred CCCCCcCCCCH
Q 005039 130 TKNDRLDLLKP 140 (717)
Q Consensus 130 T~~Dt~d~i~~ 140 (717)
+.+|+.++|+.
T Consensus 190 S~~D~~~ni~~ 200 (234)
T PF05450_consen 190 SILDDAENINF 200 (234)
T ss_pred CcccChhhhcC
Confidence 99999998865
No 8
>COG4882 Predicted aminopeptidase, Iap family [General function prediction only]
Probab=97.67 E-value=0.00029 Score=75.85 Aligned_cols=136 Identities=18% Similarity=0.168 Sum_probs=88.8
Q ss_pred HHHHHHhcCCCCCCceEEEEecCccccCcc---------chHHHHHhCCCccceeEEEEeccCCCCCcceEEEeCCChHH
Q 005039 3 ELARVMSQWAHEFKNAVIFLFNTGEEEGLN---------GAHSFVTQHPWSTTIRVAVDLEAMGIGGRSALFQAGPNLWA 73 (717)
Q Consensus 3 ElaR~l~~~~~~p~rtIiFlf~~aEE~GLl---------GS~~Fv~~hp~~~~i~a~INlD~~G~gG~~~lf~~g~~~~L 73 (717)
|++|.|... --.+-++.|+|||.|+. ||++|.++.+-.+.+.+++|+|.+|-+-. . . .+-|.|
T Consensus 217 ~~~~~lr~~----~~~~~lv~FtAEE~g~p~~~sfyWa~GSr~~lk~~k~~~~v~~~VN~Dv~g~~~l--v-~-~~~P~L 288 (486)
T COG4882 217 ETAGRLRGR----GLAAGLVVFTAEEHGMPGMASFYWAAGSRGLLKESKAAEEVEAYVNFDVAGYRCL--V-A-SGAPQL 288 (486)
T ss_pred HHHHHHhhc----CcceeEEEEeccccCCCCCcceeecccchHHHhhcCCchhhhheeccccccccch--h-h-hcChHH
Confidence 455555431 23455678899999875 89999988888899999999999987531 1 1 234777
Q ss_pred HHHHHHhcCCCCCccccccccccCCCCCCCChHhhhhcCCCcEEEEeeeCC---CCCCCCCCCCcCCCCHhHHHHHHHHH
Q 005039 74 VENFAAVAKYPSGQIIGQDLFASGVFETATDFQVYTEVAGLSGLDFAYTDK---SAVYHTKNDRLDLLKPGSLQHLGENM 150 (717)
Q Consensus 74 ~~~y~~~a~~P~~~~~~~~~f~~g~ipsdTD~~~F~~~~GIPgLd~a~~~~---~~~YHT~~Dt~d~i~~~slq~~g~~~ 150 (717)
.+...++-+.-.. ..+. -.|-..+.+ +|||.+.+...++ +..|||+.||...+ ...-.+
T Consensus 289 ~e~~~~~g~~~ve---spe~--------y~Ds~~y~~-aGiPS~Ti~SL~~~~~~e~yh~p~Dtpa~~------~n~~t~ 350 (486)
T COG4882 289 VEHALEAGAVEVE---SPEP--------YCDSIMYAW-AGIPSLTIHSLWCPGVQEAYHTPRDTPASW------DNAWTA 350 (486)
T ss_pred HHHHHHhCCceec---CCCc--------ccchhhhhh-cCCCeeEeeeccCCCccceecCCCCCchhH------HHHHHH
Confidence 7766554221111 1122 246677777 9999999876553 47899999999532 233445
Q ss_pred HHHHHHHhc-CCCCC
Q 005039 151 LDFLLQTAS-STSIP 164 (717)
Q Consensus 151 l~lv~~la~-~~~l~ 164 (717)
+.++..+++ ..++|
T Consensus 351 ~d~a~r~v~~~ie~p 365 (486)
T COG4882 351 VDAAVRTVTRGIEWP 365 (486)
T ss_pred HHHHHHHHhcCCCCC
Confidence 556666664 34444
No 9
>PF09940 DUF2172: Domain of unknown function (DUF2172); InterPro: IPR012353 The proteins in this entry are encoded by genes located in polysaccharide biosynthesis gene clusters, and are therefore believed to be involved in polysaccharide biosynthesis. The ste gene cluster (for Streptomyces eps) is involved in exopolysaccharide EPS 139A biosynthesis in Streptomyces sp. 139 []. Members of this group exhibit distant sequence similarity to aminopeptidases (IPR007484 from INTERPRO, MEROPS peptidase family M28).; PDB: 3K9T_A.
Probab=97.65 E-value=0.00031 Score=76.65 Aligned_cols=146 Identities=18% Similarity=0.243 Sum_probs=85.9
Q ss_pred hHHHHHHhcCCCCCCceEEEEecCccccCccchHHHHHhCCC--ccceeEEEEeccCCCCCcceEEEeCC-C-hHHHHHH
Q 005039 2 LELARVMSQWAHEFKNAVIFLFNTGEEEGLNGAHSFVTQHPW--STTIRVAVDLEAMGIGGRSALFQAGP-N-LWAVENF 77 (717)
Q Consensus 2 LElaR~l~~~~~~p~rtIiFlf~~aEE~GLlGS~~Fv~~hp~--~~~i~a~INlD~~G~gG~~~lf~~g~-~-~~L~~~y 77 (717)
.++||.|++ .+.+.+.+|+|-- +-.||-.|..||.. .+++++-+||.++|..|. .-+..+. . ...-++.
T Consensus 155 ~~La~~L~~--~~~rytYRflf~P----eTIGsI~yLskn~~~l~~~v~~G~vLtcvGD~~~-~syk~Sr~g~~~iDr~~ 227 (386)
T PF09940_consen 155 TFLAKWLKQ--LPNRYTYRFLFVP----ETIGSITYLSKNLDELKKNVKAGLVLTCVGDDGA-YSYKRSRRGNTLIDRAA 227 (386)
T ss_dssp HHHHHHHTT--S--SSEEEEEEE-----TTHHHHHHHHH-GGGGGG-EEEEEE--S--SSS--EEEE--TTSSSHHHHHH
T ss_pred HHHHHHHhc--CCcCceEEEEEcc----ccHHHHHHHHHCHHHHhhheeeeEEEEEecCCCC-cceecCCCCCcHHHHHH
Confidence 578999986 4456999999975 56999999999874 345999999999998764 4444333 3 3333444
Q ss_pred HHhcCCCCCccccccccccCCCCCCCChHhhhhcCC--CcEEEEeee--CCCCCCCCCCCCcCCCCHhHHHHHHHHHHHH
Q 005039 78 AAVAKYPSGQIIGQDLFASGVFETATDFQVYTEVAG--LSGLDFAYT--DKSAVYHTKNDRLDLLKPGSLQHLGENMLDF 153 (717)
Q Consensus 78 ~~~a~~P~~~~~~~~~f~~g~ipsdTD~~~F~~~~G--IPgLd~a~~--~~~~~YHT~~Dt~d~i~~~slq~~g~~~l~l 153 (717)
+...++-... . ..+ ...|-++|-+.|-. -| +|...+... +..+-|||..|+.|.|+++.|+..-+.+..+
T Consensus 228 ~~vl~~~~~~-~--~~~--~F~~~GsDERQfcS-PG~dLPv~~~~Rs~yg~ypEYHTS~Dnl~fi~p~~L~~s~~~~~~~ 301 (386)
T PF09940_consen 228 AHVLKHSGPN-F--KIY--DFLPRGSDERQFCS-PGFDLPVGSLMRSKYGEYPEYHTSLDNLDFISPEGLEGSFEVLLEA 301 (386)
T ss_dssp HHHHHHSSS--E--EEE-----S-SSTHHHHTS-TTT---EEEEESS-TT--TTTTBTTSSGGG--HHHHHHHHHHHHHH
T ss_pred HHHHHhcCCC-c--eEe--cccccCCCcceeec-CCcCCceeeeecccccCCcccccCCCccccCCHHHHHHHHHHHHHH
Confidence 3321111000 0 111 13577899999987 33 555444332 2346899999999999999999988888888
Q ss_pred HHHHhcC
Q 005039 154 LLQTASS 160 (717)
Q Consensus 154 v~~la~~ 160 (717)
+..+-+.
T Consensus 302 i~~lE~n 308 (386)
T PF09940_consen 302 IEILENN 308 (386)
T ss_dssp HHHHHH-
T ss_pred HHHHhcC
Confidence 8877764
No 10
>PF01546 Peptidase_M20: Peptidase family M20/M25/M40 This family only corresponds to M20 family; InterPro: IPR002933 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Metalloproteases are the most diverse of the four main types of protease, with more than 50 families identified to date. In these enzymes, a divalent cation, usually zinc, activates the water molecule. The metal ion is held in place by amino acid ligands, usually three in number. The known metal ligands are His, Glu, Asp or Lys and at least one other residue is required for catalysis, which may play an electrophillic role. Of the known metalloproteases, around half contain an HEXXH motif, which has been shown in crystallographic studies to form part of the metal-binding site []. The HEXXH motif is relatively common, but can be more stringently defined for metalloproteases as 'abXHEbbHbc', where 'a' is most often valine or threonine and forms part of the S1' subsite in thermolysin and neprilysin, 'b' is an uncharged residue, and 'c' a hydrophobic residue. Proline is never found in this site, possibly because it would break the helical structure adopted by this motif in metalloproteases []. This group of proteins contains the metallopeptidases and non-peptidase homologues (amidohydrolases) that belong to the MEROPS peptidase family M20 (clan MH) []. The peptidases of this clan have two catalytic zinc ions at the active site, bound by His/Asp, Asp, Glu, Asp/Glu and His. The catalysed reaction involves the release of an N-terminal amino acid, usually neutral or hydrophobic, from a polypeptide []. The peptidase M20 family has four sub-families: M20A - type example, glutamate carboxypeptidase from Pseudomonas sp. RS16 (P06621 from SWISSPROT) M20B - type example, peptidase T from Escherichia coli (P29745 from SWISSPROT) M20C - type example, X-His dipeptidase from E. coli (P15288 from SWISSPROT) M20D - type example, carboxypeptidase Ss1 from Sulfolobus solfataricus (P80092 from SWISSPROT) ; GO: 0016787 hydrolase activity, 0008152 metabolic process; PDB: 3T68_A 3T6M_A 2F8H_A 3GB0_A 3IO1_B 2ZOF_A 2ZOG_B 3MRU_B 3N5F_A 1Z2L_B ....
Probab=97.16 E-value=0.0012 Score=64.86 Aligned_cols=140 Identities=20% Similarity=0.251 Sum_probs=91.0
Q ss_pred ChHHHHHHhcCCCCCCceEEEEecCccccCcc-chHHHHHhCC-CccceeEEEEeccCCCCCcceEEEeCCChHHHHHHH
Q 005039 1 MLELARVMSQWAHEFKNAVIFLFNTGEEEGLN-GAHSFVTQHP-WSTTIRVAVDLEAMGIGGRSALFQAGPNLWAVENFA 78 (717)
Q Consensus 1 mLElaR~l~~~~~~p~rtIiFlf~~aEE~GLl-GS~~Fv~~hp-~~~~i~a~INlD~~G~gG~~~lf~~g~~~~L~~~y~ 78 (717)
++.++|.+++.+.+++++|+|+|+.+||.|-. |++.++++.. ...+....+..|..+.+.-. ...++.+.+...
T Consensus 44 ~l~a~~~l~~~~~~~~~~i~~~~~~~EE~g~~~g~~~l~~~~~~~~~~~~~~~~~e~~~~~~~~----~~~~~~~~~~~~ 119 (189)
T PF01546_consen 44 MLAALKALKESGDDLPGNIIFLFTPDEEIGSIGGAKHLLEEGAFFGLHPDYVIIGEPTGKGGVG----SDNDPPLVQALQ 119 (189)
T ss_dssp HHHHHHHHHHTTTTCSSEEEEEEESTCCGTSTTHHHHHHHHCEEEEEEESEEEECECETTSEEE----HCTCHHHHHHHH
T ss_pred HHHHHHHHHhccccccccccccccccccCCCcchhhhhhhhccccccccccccccccccccccc----ccccHHHHHHHH
Confidence 36788888876789999999999999999999 9999997641 12346666666665443211 223565666666
Q ss_pred HhcCCCCCccccccccccCCCCCCCChHhhhh--cCCCcEEEEeeeCCCCCCCCCCCCcCCCCHhHHHHHHHHHHHHH
Q 005039 79 AVAKYPSGQIIGQDLFASGVFETATDFQVYTE--VAGLSGLDFAYTDKSAVYHTKNDRLDLLKPGSLQHLGENMLDFL 154 (717)
Q Consensus 79 ~~a~~P~~~~~~~~~f~~g~ipsdTD~~~F~~--~~GIPgLd~a~~~~~~~YHT~~Dt~d~i~~~slq~~g~~~l~lv 154 (717)
++.+....... +....+..||...+.+ ..++|.+-+.... ...|++.. +++.+.+....+.+..++
T Consensus 120 ~~~~~~~~~~~-----~~~~~~g~tD~~~~~~~~~~~~~~i~~G~~~--~~~H~~~E---~i~~~~l~~~~~~~~~~l 187 (189)
T PF01546_consen 120 AAAQEVGGEPP-----EPVASGGGTDAGFLAEVKGLGIPAIGFGPGG--SNAHTPDE---YIDIEDLVKGAKIYAALL 187 (189)
T ss_dssp HHHHHTTSSEE-----EEEEESSSSTHHHHHCHHHTTEEEEEEESCE--ESTTSTT----EEEHHHHHHHHHHHHHHH
T ss_pred HHHHHHhhccc-----cccceeccccchhhhhhhccccceeeeCCCC--CCCCCCCc---EecHHHHHHHHHHHHHHH
Confidence 55333222111 1112577899999995 4788877664332 78899874 455677766666555554
No 11
>TIGR03107 glu_aminopep glutamyl aminopeptidase. This model represents the M42.001 clade within MEROPS family M42. M42 includes glutamyl aminopeptidase as in the present model, deblocking aminopeptidases as from Pyrococcus horikoshii and related species, and endo-1,4-beta-glucanase (cellulase M) as from Clostridium thermocellum. The current family includes
Probab=96.50 E-value=0.019 Score=63.50 Aligned_cols=137 Identities=18% Similarity=0.195 Sum_probs=89.1
Q ss_pred ChHHHHHHhcCCCCCCceEEEEecCccccCccchHHHHHhCCCccceeEEEEeccCCC------------CCcceEEE-e
Q 005039 1 MLELARVMSQWAHEFKNAVIFLFNTGEEEGLNGAHSFVTQHPWSTTIRVAVDLEAMGI------------GGRSALFQ-A 67 (717)
Q Consensus 1 mLElaR~l~~~~~~p~rtIiFlf~~aEE~GLlGS~~Fv~~hp~~~~i~a~INlD~~G~------------gG~~~lf~-~ 67 (717)
|+|++|.++. .++++++.|+|+.-||.|+.||+.-+.+- .+. ..|.+|..-. +|+.+.+. .
T Consensus 186 l~e~l~~l~~--~~~~~~l~~~~tvqEEvG~rGA~~aa~~i--~pD--~aI~vDv~~~~d~~~~~~~~lg~Gp~i~~~D~ 259 (350)
T TIGR03107 186 ILELLESLKD--QELPNTLIAGANVQEEVGLRGAHVSTTKF--NPD--IFFAVDCSPAGDIYGDQGGKLGEGTLLRFFDP 259 (350)
T ss_pred HHHHHHHhhh--cCCCceEEEEEEChhhcCchhhhhHHhhC--CCC--EEEEEecCCcCCCCCCCccccCCCceEEEecC
Confidence 5899999975 45789999999999999999999765322 222 5566665422 24555333 3
Q ss_pred CC--ChHHHHHHHHhcC---CCCCccccccccccCCCCCCCChH--hhhhcCCCcEEEEeeeCCCCCCCCCCCCcCCCCH
Q 005039 68 GP--NLWAVENFAAVAK---YPSGQIIGQDLFASGVFETATDFQ--VYTEVAGLSGLDFAYTDKSAVYHTKNDRLDLLKP 140 (717)
Q Consensus 68 g~--~~~L~~~y~~~a~---~P~~~~~~~~~f~~g~ipsdTD~~--~F~~~~GIPgLd~a~~~~~~~YHT~~Dt~d~i~~ 140 (717)
++ |+.+.+...+.|+ -|+ |... . ..+||-. .+.. .|+|.+.++. +-.+-||+. +.++.
T Consensus 260 ~~i~~~~l~~~l~~~A~~~~I~~-----Q~~~-~---~gGtDa~~~~~~~-~Gvpt~~i~i--p~Ry~Hs~~---e~i~~ 324 (350)
T TIGR03107 260 GHIMLPRMKDFLLTTAEEAGIKY-----QYYV-A---KGGTDAGAAHLKN-SGVPSTTIGV--CARYIHSHQ---TLYSI 324 (350)
T ss_pred CCCCCHHHHHHHHHHHHHcCCCc-----EEec-C---CCCchHHHHHHhC-CCCcEEEEcc--CcccccChh---heeeH
Confidence 43 6777777665543 232 2211 1 2356665 5555 7999988753 334559987 45567
Q ss_pred hHHHHHHHHHHHHHHHHh
Q 005039 141 GSLQHLGENMLDFLLQTA 158 (717)
Q Consensus 141 ~slq~~g~~~l~lv~~la 158 (717)
+.+.++.+.+.+++..+.
T Consensus 325 ~D~~~~~~Ll~~~i~~l~ 342 (350)
T TIGR03107 325 DDFLAAQAFLQAIVKKLD 342 (350)
T ss_pred HHHHHHHHHHHHHHHhcC
Confidence 888888888877776653
No 12
>PRK09961 exoaminopeptidase; Provisional
Probab=96.19 E-value=0.038 Score=60.97 Aligned_cols=141 Identities=16% Similarity=0.164 Sum_probs=87.0
Q ss_pred ChHHHHHHhcCCCCCCceEEEEecCccccCccchHHHHHhCCCccceeEEEEeccCCC---------------CCcceEE
Q 005039 1 MLELARVMSQWAHEFKNAVIFLFNTGEEEGLNGAHSFVTQHPWSTTIRVAVDLEAMGI---------------GGRSALF 65 (717)
Q Consensus 1 mLElaR~l~~~~~~p~rtIiFlf~~aEE~GLlGS~~Fv~~hp~~~~i~a~INlD~~G~---------------gG~~~lf 65 (717)
++|++|.+++ .++..+|.|+|+.-||.|+.||+.-..+ ..+. ..|-+|.+-. +|+.+.+
T Consensus 174 lle~l~~l~~--~~~~~~v~~~~tvqEEvG~rGa~~aa~~--i~pd--~~I~vDv~~~~d~~~~~~~~~~~lg~Gp~i~~ 247 (344)
T PRK09961 174 LVTLLRELHD--AELPAEVWLVASSSEEVGLRGGQTATRA--VSPD--VAIVLDTACWAKNFDYGAANHRQIGNGPMLVL 247 (344)
T ss_pred HHHHHHHhhh--cCCCceEEEEEEcccccchHHHHHHHhc--cCCC--EEEEEeccCCCCCCCCCCCcccccCCCceEEE
Confidence 5789998874 3578999999999999999999988733 2223 3555554422 2444423
Q ss_pred E-eCC--ChHHHHHHHHhcCCCCCccccccccccCCCCCCCChHhhhh-cCCCcEEEEeeeCCCCCCCCCCCCcCCCCHh
Q 005039 66 Q-AGP--NLWAVENFAAVAKYPSGQIIGQDLFASGVFETATDFQVYTE-VAGLSGLDFAYTDKSAVYHTKNDRLDLLKPG 141 (717)
Q Consensus 66 ~-~g~--~~~L~~~y~~~a~~P~~~~~~~~~f~~g~ipsdTD~~~F~~-~~GIPgLd~a~~~~~~~YHT~~Dt~d~i~~~ 141 (717)
. .++ ++.+.+...+.++.- +.....+.+ .+.+||-..|.. ..|+|.+.+..- ..+-||+. +.++.+
T Consensus 248 ~D~~~i~~~~l~~~l~~~A~~~-~Ip~Q~~~~----~ggGTDa~~~~~~~~Giptv~ig~p--~ry~Hs~~---E~v~~~ 317 (344)
T PRK09961 248 SDKSLIAPPKLTAWIETVAAEI-GIPLQADMF----SNGGTDGGAVHLTGTGVPTVVMGPA--TRHGHCAA---SIADCR 317 (344)
T ss_pred ccCCcCCCHHHHHHHHHHHHHc-CCCcEEEec----CCCcchHHHHHHhCCCCCEEEechh--hhcccChh---heEEHH
Confidence 2 222 677777766554321 111111122 234688887654 268999987542 12348876 556677
Q ss_pred HHHHHHHHHHHHHHHH
Q 005039 142 SLQHLGENMLDFLLQT 157 (717)
Q Consensus 142 slq~~g~~~l~lv~~l 157 (717)
.+.++.+.+.+++..+
T Consensus 318 D~~~~~~Ll~~~i~~l 333 (344)
T PRK09961 318 DILQMIQLLSALIQRL 333 (344)
T ss_pred HHHHHHHHHHHHHHHc
Confidence 7877777776666544
No 13
>PRK09864 putative peptidase; Provisional
Probab=95.95 E-value=0.057 Score=59.80 Aligned_cols=136 Identities=20% Similarity=0.186 Sum_probs=87.1
Q ss_pred ChHHHHHHhcCCCCCCceEEEEecCccccCccchHHHHHhCCCccceeEEEEeccCC----------------CCCcce-
Q 005039 1 MLELARVMSQWAHEFKNAVIFLFNTGEEEGLNGAHSFVTQHPWSTTIRVAVDLEAMG----------------IGGRSA- 63 (717)
Q Consensus 1 mLElaR~l~~~~~~p~rtIiFlf~~aEE~GLlGS~~Fv~~hp~~~~i~a~INlD~~G----------------~gG~~~- 63 (717)
|+|++|.++. ++.++.|+|+--||.|+.||+.-+.+.+ +++ .|-+|+.- .+|+.+
T Consensus 183 lle~l~~l~~----~~~~vy~v~TvQEEvGlrGA~~aa~~i~--PDi--aIavDvt~~~d~p~~~~~~~~~~lG~Gp~i~ 254 (356)
T PRK09864 183 MAELLQTVNN----PEITLYGVGSVEEEVGLRGAQTSAEHIK--PDV--VIVLDTAVAGDVPGIDNIKYPLKLGQGPGLM 254 (356)
T ss_pred HHHHHHHhhc----CCCeEEEEEEcchhcchHHHHHHHhcCC--CCE--EEEEecccCCCCCCCcccccccccCCCCeEE
Confidence 5789998853 7799999999999999999998764332 233 55555432 124445
Q ss_pred EEEeCC--ChHHHHHHHHhcC---CCCCccccccccccCCCCCCCChHhhhh-cCCCcEEEEeeeCCCCCCCCCCCCcCC
Q 005039 64 LFQAGP--NLWAVENFAAVAK---YPSGQIIGQDLFASGVFETATDFQVYTE-VAGLSGLDFAYTDKSAVYHTKNDRLDL 137 (717)
Q Consensus 64 lf~~g~--~~~L~~~y~~~a~---~P~~~~~~~~~f~~g~ipsdTD~~~F~~-~~GIPgLd~a~~~~~~~YHT~~Dt~d~ 137 (717)
.+..|+ ++++.+...+.|+ -|+ ..+... ..+||-..+.. ..|+|.+-++. +--+-||+.-.
T Consensus 255 ~~D~~~i~~~~l~~~l~~~A~~~~Ip~----Q~~~~~----~ggTDa~~i~~~~~Gvpt~~isi--P~RY~Hs~~e~--- 321 (356)
T PRK09864 255 LFDKRYFPNQKLVAALKSCAAHNDLPL----QFSTMK----TGATDGGRYNVMGGGRPVVALCL--PTRYLHANSGM--- 321 (356)
T ss_pred EccCCccCCHHHHHHHHHHHHHcCCCc----eEEEcC----CCCchHHHHHHhCCCCcEEEEee--ccCcCCCcceE---
Confidence 343344 6888777665433 232 122222 24777766654 27999887753 34456998754
Q ss_pred CCHhHHHHHHHHHHHHHHHH
Q 005039 138 LKPGSLQHLGENMLDFLLQT 157 (717)
Q Consensus 138 i~~~slq~~g~~~l~lv~~l 157 (717)
++.+.+.++.+.+.+++..+
T Consensus 322 ~~~~D~e~~~~Ll~~~~~~l 341 (356)
T PRK09864 322 ISKADYDALLTLIRDFLTTL 341 (356)
T ss_pred eEHHHHHHHHHHHHHHHHhc
Confidence 55677777777776666654
No 14
>COG4310 Uncharacterized protein conserved in bacteria with an aminopeptidase-like domain [General function prediction only]
Probab=95.67 E-value=0.052 Score=58.01 Aligned_cols=146 Identities=16% Similarity=0.232 Sum_probs=98.1
Q ss_pred HHHHHhcCCCCCCceEEEEecCccccCccchHHHHHhCCC-ccceeEEEEeccCCCCCcceEEEeCCChHHHHH-HHHhc
Q 005039 4 LARVMSQWAHEFKNAVIFLFNTGEEEGLNGAHSFVTQHPW-STTIRVAVDLEAMGIGGRSALFQAGPNLWAVEN-FAAVA 81 (717)
Q Consensus 4 laR~l~~~~~~p~rtIiFlf~~aEE~GLlGS~~Fv~~hp~-~~~i~a~INlD~~G~gG~~~lf~~g~~~~L~~~-y~~~a 81 (717)
+|++|+. .+-+.+.+|+|-- +-.||-.|..+|.. .+++++-+-+-+.|-||-.-.-++.-...+++- ....-
T Consensus 206 lak~l~~--~ktrysYRfvf~P----~TiGsi~wLsrnee~lkhvk~GlVlsClGD~g~~nykrtrrgna~iDki~~~tl 279 (435)
T COG4310 206 LAKALKS--LKTRYSYRFVFAP----ETIGSIVWLSRNEECLKHVKHGLVLSCLGDGGGPNYKRTRRGNALIDKIALHTL 279 (435)
T ss_pred HHHHHHh--ccceeeEEEEecc----cccchhhhHhcchhHHhhhhcceEEEEecCCCCccceeccccchHHHHHHHHHH
Confidence 4666664 3468889999864 35899999998875 478999999999998876656665443334433 33332
Q ss_pred CCCCCccccccccccCCCCCCCChHhhhhc-CCCc--EEEEeeeCCCCCCCCCCCCcCCCCHhHHHHHHHHHHHHHHHHh
Q 005039 82 KYPSGQIIGQDLFASGVFETATDFQVYTEV-AGLS--GLDFAYTDKSAVYHTKNDRLDLLKPGSLQHLGENMLDFLLQTA 158 (717)
Q Consensus 82 ~~P~~~~~~~~~f~~g~ipsdTD~~~F~~~-~GIP--gLd~a~~~~~~~YHT~~Dt~d~i~~~slq~~g~~~l~lv~~la 158 (717)
+|--... .++ ..+|-++|-+.|..- .++| ++.=..+++-.-|||..|+.+.|+++.|...-+.++.++..+-
T Consensus 280 ~~~~s~~---~~~--dF~p~G~DERQf~sPg~NLpvg~~~Rs~yG~f~~YHtSaDnL~fi~~e~L~~s~~~~memI~~lE 354 (435)
T COG4310 280 KHCGSNF---KAA--DFLPYGSDERQFCSPGFNLPVGGLQRSRYGDFDGYHTSADNLDFISPEGLAGSFQMMMEMILNLE 354 (435)
T ss_pred hcCCcCc---eee--ecccCCCchhhccCCCcCCchhhhhHhhcCCCccccCccccccccCHHHHHHHHHHHHHHHHHHH
Confidence 3322111 112 247889999999761 1222 2222234556789999999999999998888888888888776
Q ss_pred cC
Q 005039 159 SS 160 (717)
Q Consensus 159 ~~ 160 (717)
+.
T Consensus 355 ~N 356 (435)
T COG4310 355 IN 356 (435)
T ss_pred hc
Confidence 54
No 15
>COG1363 FrvX Cellulase M and related proteins [Carbohydrate transport and metabolism]
Probab=94.79 E-value=0.25 Score=54.63 Aligned_cols=139 Identities=19% Similarity=0.215 Sum_probs=90.6
Q ss_pred ChHHHHHHhcCCCCCCceEEEEecCccccCccchHHHHHhCCCccceeEEEEeccCCCC--------------CcceEEE
Q 005039 1 MLELARVMSQWAHEFKNAVIFLFNTGEEEGLNGAHSFVTQHPWSTTIRVAVDLEAMGIG--------------GRSALFQ 66 (717)
Q Consensus 1 mLElaR~l~~~~~~p~rtIiFlf~~aEE~GLlGS~~Fv~~hp~~~~i~a~INlD~~G~g--------------G~~~lf~ 66 (717)
|||++|.| + +..+.+++.|+|+--||.|+-||+....+- +-...|.+|..+.+ |+.+...
T Consensus 188 lle~lk~l-~-~~~~~~~vy~v~tvqEEVGlrGA~~~a~~i----~pd~aiavd~~~~~d~~~~~~~~~~lg~Gp~i~~~ 261 (355)
T COG1363 188 LLELLKEL-K-GIELPADVYFVASVQEEVGLRGAKTSAFRI----KPDIAIAVDVTPAGDTPGVPKGDVKLGKGPVIRVK 261 (355)
T ss_pred HHHHHHHh-c-cCCCCceEEEEEecchhhccchhhcccccc----CCCEEEEEecccccCCCCCcccccccCCCCEEEEE
Confidence 68999999 4 678899999999999999999999887321 23355666666554 2334333
Q ss_pred -e-CC-ChHHHHHHHHhcC---CCCCccccccccccCCCC-CCCChHhhhh-cCCCcEEEEeeeCCCCCCCCCCCCcCCC
Q 005039 67 -A-GP-NLWAVENFAAVAK---YPSGQIIGQDLFASGVFE-TATDFQVYTE-VAGLSGLDFAYTDKSAVYHTKNDRLDLL 138 (717)
Q Consensus 67 -~-g~-~~~L~~~y~~~a~---~P~~~~~~~~~f~~g~ip-sdTD~~~F~~-~~GIPgLd~a~~~~~~~YHT~~Dt~d~i 138 (717)
. ++ ++.+.+...+.|+ -|+ ..++ .| .+||-..+.. ..|+|..-++. +-.+-|+++ +.+
T Consensus 262 D~~~~~~~~l~~~L~~~A~~~~Ip~----Q~~v-----~~~ggTDA~a~~~~g~gvpta~Igi--p~ry~Hs~~---e~~ 327 (355)
T COG1363 262 DASGIYHPKLRKFLLELAEKNNIPY----QVDV-----SPGGGTDAGAAHLTGGGVPTALIGI--PTRYIHSPV---EVA 327 (355)
T ss_pred cCCCCCCHHHHHHHHHHHHHcCCCe----EEEe-----cCCCCccHHHHHHcCCCCceEEEec--ccccccCcc---eee
Confidence 2 23 5777666554332 232 2233 34 6889888765 26799876653 234558876 556
Q ss_pred CHhHHHHHHHHHHHHHHHHhc
Q 005039 139 KPGSLQHLGENMLDFLLQTAS 159 (717)
Q Consensus 139 ~~~slq~~g~~~l~lv~~la~ 159 (717)
+.+.+.++.+.+.+++..+..
T Consensus 328 ~~~D~~~~~~Ll~~~i~~~~~ 348 (355)
T COG1363 328 HLDDLEATVKLLVAYLESLDR 348 (355)
T ss_pred cHHHHHHHHHHHHHHHHhcch
Confidence 677887777777766666553
No 16
>TIGR03106 trio_M42_hydro hydrolase, peptidase M42 family. This model describes a subfamily of MEROPS peptidase family M42, a glutamyl aminopeptidase family that also includes the cellulase CelM from Clostridium thermocellum and deblocking aminopeptidases that can remove acylated amino acids. Members of this family occur in a three gene cassette with an amidotransferase (TIGR03104)in the asparagine synthase (glutamine-hydrolyzing) family, and a probable acetyltransferase (TIGR03103) in the GNAT family.
Probab=94.78 E-value=0.15 Score=56.32 Aligned_cols=137 Identities=15% Similarity=0.215 Sum_probs=80.2
Q ss_pred ChHHHHHHhcCCCCCCceEEEEecCccccCccchHHHHHhCCCccceeEEEEeccCCC--------CCcce-EEEeC-C-
Q 005039 1 MLELARVMSQWAHEFKNAVIFLFNTGEEEGLNGAHSFVTQHPWSTTIRVAVDLEAMGI--------GGRSA-LFQAG-P- 69 (717)
Q Consensus 1 mLElaR~l~~~~~~p~rtIiFlf~~aEE~GLlGS~~Fv~~hp~~~~i~a~INlD~~G~--------gG~~~-lf~~g-~- 69 (717)
|+|++|.+.+.+.+++++|.|+|+..||.| .|+. +...+++...|.+|.... +|+.+ ....+ +
T Consensus 191 ~l~~~~~l~~~~~~~~~~v~~~~t~qEEvG-~gaa-----~~i~pd~a~~i~vd~~~~~p~~~~lg~Gp~i~~~d~~~~~ 264 (343)
T TIGR03106 191 LLAALKAIVEHKVPLPVDVHPLFTITEEVG-SGAS-----HALPPDVAELVSVDNGTVAPGQNSSEHGVTIAMADSSGPF 264 (343)
T ss_pred HHHHHHHHHhcCCCCCceEEEEEECCcccC-ccch-----hcccHhhhccEEEEecccCCCCCcCCCCceEEEecCCCCC
Confidence 578999998766678899999999999999 5631 111223334466664321 24444 23223 2
Q ss_pred ChHHHHHHHHhcCCCCCccccccccccCCCCCCCChHhhhh-cCCCcEEEEeeeCCCCCCCCCCCCcCCCCHhHHHHHHH
Q 005039 70 NLWAVENFAAVAKYPSGQIIGQDLFASGVFETATDFQVYTE-VAGLSGLDFAYTDKSAVYHTKNDRLDLLKPGSLQHLGE 148 (717)
Q Consensus 70 ~~~L~~~y~~~a~~P~~~~~~~~~f~~g~ipsdTD~~~F~~-~~GIPgLd~a~~~~~~~YHT~~Dt~d~i~~~slq~~g~ 148 (717)
|+++.+...+.|+. .+-....+++. ..+||-..+.. ..|+|..-++. +-.+-|| .+.++.+.+.++.+
T Consensus 265 ~~~l~~~l~~~A~~-~~Ip~Q~~~~~----~~gtDa~~~~~~~~Gi~t~~i~i--P~Ry~Hs----~e~~~~~D~~~~~~ 333 (343)
T TIGR03106 265 DYHLTRKLIRLCQD-HGIPHRRDVFR----YYRSDAASAVEAGHDIRTALVTF--GLDASHG----YERTHIDALEALAN 333 (343)
T ss_pred CHHHHHHHHHHHHH-cCCCcEEEecC----CCCChHHHHHHcCCCCCEEEeec--cccchhh----hhhccHHHHHHHHH
Confidence 67777766655431 11111223332 13667666543 27899877653 2334477 57777888877666
Q ss_pred HHHHHH
Q 005039 149 NMLDFL 154 (717)
Q Consensus 149 ~~l~lv 154 (717)
.+.+++
T Consensus 334 Ll~~~~ 339 (343)
T TIGR03106 334 LLVAYA 339 (343)
T ss_pred HHHHHh
Confidence 554433
No 17
>KOG2657 consensus Transmembrane glycoprotein nicastrin [Signal transduction mechanisms; Posttranslational modification, protein turnover, chaperones]
Probab=93.53 E-value=0.2 Score=56.87 Aligned_cols=140 Identities=14% Similarity=0.146 Sum_probs=85.5
Q ss_pred hHHHHHHhcCC--CCCCceEEEEecCccccCccchHHHHHh---CC--Cc-cc---eeEEEEeccCCCC-Ccc-eEEEeC
Q 005039 2 LELARVMSQWA--HEFKNAVIFLFNTGEEEGLNGAHSFVTQ---HP--WS-TT---IRVAVDLEAMGIG-GRS-ALFQAG 68 (717)
Q Consensus 2 LElaR~l~~~~--~~p~rtIiFlf~~aEE~GLlGS~~Fv~~---hp--~~-~~---i~a~INlD~~G~g-G~~-~lf~~g 68 (717)
|..||++++.+ ...+|+|.|+|+.||-.+-+||..++-| |+ .+ ++ +..++.+-.+|-+ ++. .++..+
T Consensus 210 laaa~al~r~pai~nl~rnV~f~~f~get~~ylgS~r~~yeme~gk~pva~~s~~~iD~~LEiGqvg~~~s~kl~~~~d~ 289 (596)
T KOG2657|consen 210 LAAARALKRQPAINNLNRNVFFAFFNGETLDYLGSGRAAYEMENGKFPVAIRSDNEIDYILEIGQVGVAKSRKLYVHVDG 289 (596)
T ss_pred HHHHHHhccCcccccccceeEEEEeecceeeeccchhhhhHhhcCCCCeeeccCccchheeeecccccccCceEEEEecc
Confidence 56788887532 4679999999999999999999977633 32 21 23 7777777777653 333 344433
Q ss_pred C-C----hHH---HHHHHHhc-CCCCCccccccccccCCCCCCCChHhhhhcCCCcEEEEeeeCCC---CCCCCCCCCcC
Q 005039 69 P-N----LWA---VENFAAVA-KYPSGQIIGQDLFASGVFETATDFQVYTEVAGLSGLDFAYTDKS---AVYHTKNDRLD 136 (717)
Q Consensus 69 ~-~----~~L---~~~y~~~a-~~P~~~~~~~~~f~~g~ipsdTD~~~F~~~~GIPgLd~a~~~~~---~~YHT~~Dt~d 136 (717)
. . ... ++.+++.- .+++.- +.++.-..++.| .+=++..++..++.++-++..+.. .+||+-+|+.|
T Consensus 290 ~~~~sv~nqtld~L~~~ekSlrs~~f~l-l~~s~~s~~lPP-sSlqsFlR~dpn~saVvLad~~~~f~NKyYhSilDdae 367 (596)
T KOG2657|consen 290 ERYQSVKNQTLDVLDRIEKSLRSHAFDL-LKPSGSSDRLPP-SSLQSFLRADPNVSAVVLADYGKEFENKYYHSILDDAE 367 (596)
T ss_pred chhhhHHHHHHHHHHHHHhcccccCeee-ecCCCCCCCCCh-HHHHHHHhhCCCcceEEeccCCchhhhhhhhhhhcchh
Confidence 2 1 222 33343331 244421 222222234333 333444443578999988876633 58999999999
Q ss_pred CCCHhHH
Q 005039 137 LLKPGSL 143 (717)
Q Consensus 137 ~i~~~sl 143 (717)
+|+-..-
T Consensus 368 Nin~sy~ 374 (596)
T KOG2657|consen 368 NINDSYE 374 (596)
T ss_pred hccchhh
Confidence 9987654
No 18
>PF05343 Peptidase_M42: M42 glutamyl aminopeptidase; InterPro: IPR008007 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Metalloproteases are the most diverse of the four main types of protease, with more than 50 families identified to date. In these enzymes, a divalent cation, usually zinc, activates the water molecule. The metal ion is held in place by amino acid ligands, usually three in number. The known metal ligands are His, Glu, Asp or Lys and at least one other residue is required for catalysis, which may play an electrophillic role. Of the known metalloproteases, around half contain an HEXXH motif, which has been shown in crystallographic studies to form part of the metal-binding site []. The HEXXH motif is relatively common, but can be more stringently defined for metalloproteases as 'abXHEbbHbc', where 'a' is most often valine or threonine and forms part of the S1' subsite in thermolysin and neprilysin, 'b' is an uncharged residue, and 'c' a hydrophobic residue. Proline is never found in this site, possibly because it would break the helical structure adopted by this motif in metalloproteases []. This group of metallopeptidases belong to MEROPS peptidase family M42 (glutamyl aminopeptidase family, clan MH). For members of this family and family M28 the predicted metal ligands occur in the same order in the sequence: H, D, E, D/E, H; and the active site residues occur in the motifs HXD and EE. ; PDB: 2WYR_C 2CF4_A 1VHO_A 3ISX_A 3KL9_G 1YLO_F 3CPX_C 1VHE_A 2GRE_F 1XFO_A ....
Probab=93.11 E-value=0.21 Score=53.90 Aligned_cols=119 Identities=24% Similarity=0.364 Sum_probs=74.8
Q ss_pred ChHHHHHHhcCCCCCCceEEEEecCccccCccchHHHHHh-CCCccceeEEEEeccC------CCC--------CcceEE
Q 005039 1 MLELARVMSQWAHEFKNAVIFLFNTGEEEGLNGAHSFVTQ-HPWSTTIRVAVDLEAM------GIG--------GRSALF 65 (717)
Q Consensus 1 mLElaR~l~~~~~~p~rtIiFlf~~aEE~GLlGS~~Fv~~-hp~~~~i~a~INlD~~------G~g--------G~~~lf 65 (717)
|+|++|.++. .+.+.++.|+|..-||.|+.||+....+ +| ...|.+|.. |.. |+.+..
T Consensus 142 lle~l~~l~~--~~~~~~v~~v~tvqEEvG~rGA~~aa~~i~P-----D~ai~vD~~~a~d~~~~~~~~~~lG~Gp~i~~ 214 (292)
T PF05343_consen 142 LLELLRELKE--KELDVDVYFVFTVQEEVGLRGAKTAAFRIKP-----DIAIAVDVTPAGDTPGSDEKEQGLGKGPVIRV 214 (292)
T ss_dssp HHHHHHHHTT--SS-SSEEEEEEESSCTTTSHHHHHHHHHH-C-----SEEEEEEEEEESSSTTSTTTTSCTTS-EEEEE
T ss_pred HHHHHHHHhh--cCCCceEEEEEEeeeeecCcceeecccccCC-----CEEEEEeeeccCCCCCCchhhccCCCCcEEEE
Confidence 5899999986 4556999999999999999999988754 23 233333332 222 344433
Q ss_pred EeC-C--ChHHHHHHHHhcC---CCCCccccccccccCCCCCCCChHhhhh-cCCCcEEEEeeeCCCCCCCCCCCCcC
Q 005039 66 QAG-P--NLWAVENFAAVAK---YPSGQIIGQDLFASGVFETATDFQVYTE-VAGLSGLDFAYTDKSAVYHTKNDRLD 136 (717)
Q Consensus 66 ~~g-~--~~~L~~~y~~~a~---~P~~~~~~~~~f~~g~ipsdTD~~~F~~-~~GIPgLd~a~~~~~~~YHT~~Dt~d 136 (717)
... + ++++.+...+.|+ -|+ ..+.+ ...+||-..+.. ..|+|..-++. +-.+.||+.-..+
T Consensus 215 ~D~~~i~~~~l~~~l~~~A~~~~Ip~----Q~~~~----~~ggTDa~~~~~~~~Gi~t~~i~i--P~ry~Hs~~e~~~ 282 (292)
T PF05343_consen 215 GDSSMIPNPKLVDKLREIAEENGIPY----QREVF----SGGGTDAGAIQLSGGGIPTAVISI--PCRYMHSPVEVID 282 (292)
T ss_dssp EETTEESHHHHHHHHHHHHHHTT--E----EEEEE----SSSSSTHHHHHTSTTSSEEEEEEE--EEBSTTSTTEEEE
T ss_pred ccCCCCCCHHHHHHHHHHHHHcCCCe----EEEec----CCcccHHHHHHHcCCCCCEEEEec--ccccCCCcceEEE
Confidence 322 2 5677766655433 232 22233 256789888765 26899887754 3467899886655
No 19
>TIGR01910 DapE-ArgE acetylornithine deacetylase or succinyl-diaminopimelate desuccinylase. This group of sequences contains annotations for both acetylornithine deacetylase and succinyl-diaminopimelate desuccinylase, but does not contain any members with experimental characterization. Bacillus, Staphylococcus and Sulfolobus species contain multiple hits to this subfamily and each may have a separate activity. Determining which is which must await further laboratory research.
Probab=92.32 E-value=0.19 Score=55.40 Aligned_cols=55 Identities=13% Similarity=0.108 Sum_probs=43.3
Q ss_pred ChHHHHHHhcCCCCCCceEEEEecCccccCccchHHHHHhCCCccceeEEEEeccC
Q 005039 1 MLELARVMSQWAHEFKNAVIFLFNTGEEEGLNGAHSFVTQHPWSTTIRVAVDLEAM 56 (717)
Q Consensus 1 mLElaR~l~~~~~~p~rtIiFlf~~aEE~GLlGS~~Fv~~hp~~~~i~a~INlD~~ 56 (717)
||+.++.|.+.+.+++++|+|+|+.+||.|..|++.++++ ...++....+..|..
T Consensus 113 ~l~a~~~l~~~~~~~~~~i~~~~~~~EE~g~~G~~~~~~~-~~~~~~d~~i~~~~~ 167 (375)
T TIGR01910 113 LLYALKAIREAGIKPNGNIILQSVVDEESGEAGTLYLLQR-GYFKDADGVLIPEPS 167 (375)
T ss_pred HHHHHHHHHHcCCCCCccEEEEEEcCcccCchhHHHHHHc-CCCCCCCEEEECCCC
Confidence 5788888877666788999999999999999999999954 344445666777754
No 20
>PRK09133 hypothetical protein; Provisional
Probab=91.53 E-value=0.21 Score=57.11 Aligned_cols=54 Identities=17% Similarity=0.182 Sum_probs=44.3
Q ss_pred ChHHHHHHhcCCCCCCceEEEEecCccc-cCccchHHHHHhCCCccceeEEEEecc
Q 005039 1 MLELARVMSQWAHEFKNAVIFLFNTGEE-EGLNGAHSFVTQHPWSTTIRVAVDLEA 55 (717)
Q Consensus 1 mLElaR~l~~~~~~p~rtIiFlf~~aEE-~GLlGS~~Fv~~hp~~~~i~a~INlD~ 55 (717)
||+.+++|.+.+.+++++|.|++...|| .|..|++.++++++..-+..++|| |.
T Consensus 149 ~l~a~~~l~~~~~~~~~~i~~~~~~dEE~~g~~G~~~l~~~~~~~~~~~~~i~-e~ 203 (472)
T PRK09133 149 WVATLIRLKREGFKPKRDIILALTGDEEGTPMNGVAWLAENHRDLIDAEFALN-EG 203 (472)
T ss_pred HHHHHHHHHhcCCCCCCCEEEEEECccccCccchHHHHHHHHhhccCeEEEEE-CC
Confidence 4778888877667889999999999999 899999999987764334567888 75
No 21
>PRK08588 succinyl-diaminopimelate desuccinylase; Reviewed
Probab=90.85 E-value=0.35 Score=53.39 Aligned_cols=54 Identities=15% Similarity=0.221 Sum_probs=42.0
Q ss_pred ChHHHHHHhcCCCCCCceEEEEecCccccCccchHHHHHhCCCccceeEEEEecc
Q 005039 1 MLELARVMSQWAHEFKNAVIFLFNTGEEEGLNGAHSFVTQHPWSTTIRVAVDLEA 55 (717)
Q Consensus 1 mLElaR~l~~~~~~p~rtIiFlf~~aEE~GLlGS~~Fv~~hp~~~~i~a~INlD~ 55 (717)
||+.++.|.+.+..++++|.|+|..+||.|..|++.++++ .+.++...++..|-
T Consensus 108 ~l~a~~~l~~~~~~~~~~i~l~~~~dEE~g~~G~~~~~~~-~~~~~~d~~i~~ep 161 (377)
T PRK08588 108 LVIAMIELKEQGQLLNGTIRLLATAGEEVGELGAKQLTEK-GYADDLDALIIGEP 161 (377)
T ss_pred HHHHHHHHHHcCCCCCCcEEEEEEcccccCchhHHHHHhc-CccCCCCEEEEecC
Confidence 4677888877677788999999999999999999999954 44445555555554
No 22
>TIGR01879 hydantase amidase, hydantoinase/carbamoylase family. Enzymes in this subfamily hydrolize the amide bonds of compounds containing carbamoyl groups or hydantoin rings. These enzymes are members of the broader family of amidases represented by pfam01546.
Probab=89.24 E-value=0.33 Score=54.34 Aligned_cols=42 Identities=17% Similarity=0.127 Sum_probs=37.2
Q ss_pred ChHHHHHHhcCCCCCCceEEEEecCcccc-----CccchHHHHHhCC
Q 005039 1 MLELARVMSQWAHEFKNAVIFLFNTGEEE-----GLNGAHSFVTQHP 42 (717)
Q Consensus 1 mLElaR~l~~~~~~p~rtIiFlf~~aEE~-----GLlGS~~Fv~~hp 42 (717)
|||++|.|++.+.+|+++|.|+++..||. |++||++++.+..
T Consensus 94 ~l~a~~~l~~~g~~~~~~i~~~~~~dEE~~~f~~~~~Gs~~~~~~~~ 140 (401)
T TIGR01879 94 GIEVVDALKEAYVVPLHPIEVVAFTEEEGSRFPYGMWGSRNMVGLAN 140 (401)
T ss_pred HHHHHHHHHHcCCCCCCCeEEEEEeCCcCcCcccccccHHHHhcccc
Confidence 58999999988888999999999999997 8999999985443
No 23
>PRK06133 glutamate carboxypeptidase; Reviewed
Probab=88.98 E-value=0.72 Score=51.80 Aligned_cols=54 Identities=20% Similarity=0.333 Sum_probs=43.1
Q ss_pred ChHHHHHHhcCCCCCCceEEEEecCccccCccchHHHHHhCCCccceeEEEEeccC
Q 005039 1 MLELARVMSQWAHEFKNAVIFLFNTGEEEGLNGAHSFVTQHPWSTTIRVAVDLEAM 56 (717)
Q Consensus 1 mLElaR~l~~~~~~p~rtIiFlf~~aEE~GLlGS~~Fv~~hp~~~~i~a~INlD~~ 56 (717)
||+.++.|.+.+.+++++|+|+|..+||.|..|++.++++.. .+...+++.|..
T Consensus 144 ~l~a~~~l~~~~~~~~~~i~~~~~~dEE~g~~G~~~~~~~~~--~~~d~~i~~ep~ 197 (410)
T PRK06133 144 ILHALKILQQLGFKDYGTLTVLFNPDEETGSPGSRELIAELA--AQHDVVFSCEPG 197 (410)
T ss_pred HHHHHHHHHHcCCCCCCCEEEEEECCcccCCccHHHHHHHHh--ccCCEEEEeCCC
Confidence 477888887766667789999999999999999999997644 245677777753
No 24
>PRK08596 acetylornithine deacetylase; Validated
Probab=88.19 E-value=0.66 Score=52.25 Aligned_cols=53 Identities=21% Similarity=0.209 Sum_probs=43.2
Q ss_pred ChHHHHHHhcCCCCCCceEEEEecCccccCccchHHHHHhCCCccceeEEEEeccC
Q 005039 1 MLELARVMSQWAHEFKNAVIFLFNTGEEEGLNGAHSFVTQHPWSTTIRVAVDLEAM 56 (717)
Q Consensus 1 mLElaR~l~~~~~~p~rtIiFlf~~aEE~GLlGS~~Fv~~hp~~~~i~a~INlD~~ 56 (717)
||+.+++|.+.+.+++++|+|+|..+||.|..|++.+++++. .....|+.|..
T Consensus 126 ~l~a~~~l~~~~~~~~~~v~~~~~~dEE~g~~G~~~~~~~~~---~~d~~i~~ep~ 178 (421)
T PRK08596 126 ALFAIQLLHEAGIELPGDLIFQSVIGEEVGEAGTLQCCERGY---DADFAVVVDTS 178 (421)
T ss_pred HHHHHHHHHHcCCCCCCcEEEEEEeccccCCcCHHHHHhcCC---CCCEEEECCCC
Confidence 477888898767778899999999999999999999996653 34677777753
No 25
>PRK06156 hypothetical protein; Provisional
Probab=87.75 E-value=0.69 Score=53.80 Aligned_cols=51 Identities=14% Similarity=0.155 Sum_probs=40.9
Q ss_pred hHHHHHHhcCCCCCCceEEEEecCccccCccchHHHHHhCCCccceeEEEEecc
Q 005039 2 LELARVMSQWAHEFKNAVIFLFNTGEEEGLNGAHSFVTQHPWSTTIRVAVDLEA 55 (717)
Q Consensus 2 LElaR~l~~~~~~p~rtIiFlf~~aEE~GLlGS~~Fv~~hp~~~~i~a~INlD~ 55 (717)
|+.++.|.+.+.+++++|.|+|...||.|..|++++..++. ..+..+|+|.
T Consensus 163 l~a~~~l~~~~~~~~~~i~~~~~~dEE~g~~G~~~~~~~~~---~~~~~~~~D~ 213 (520)
T PRK06156 163 LYAMKAIKDSGLPLARRIELLVYTTEETDGDPLKYYLERYT---PPDYNITLDA 213 (520)
T ss_pred HHHHHHHHHcCCCCCceEEEEEecccccCchhHHHHHHhcC---CCCeEEeeCC
Confidence 56677777666677899999999999999999999996653 3466677775
No 26
>TIGR03176 AllC allantoate amidohydrolase. This enzyme catalyzes the breakdown of allantoate, first to ureidoglycine by hydrolysis and then decarboxylation of one of the two equivalent ureido groups. Ureidoglycine then spontaneously exchanges ammonia for water resulting in ureidoglycolate. This enzyme is an alternative to allantoicase (3.5.3.4) which releases urea.
Probab=87.52 E-value=0.53 Score=52.95 Aligned_cols=39 Identities=13% Similarity=0.001 Sum_probs=35.6
Q ss_pred ChHHHHHHhcCCCCCCceEEEEecCccccC-----ccchHHHHH
Q 005039 1 MLELARVMSQWAHEFKNAVIFLFNTGEEEG-----LNGAHSFVT 39 (717)
Q Consensus 1 mLElaR~l~~~~~~p~rtIiFlf~~aEE~G-----LlGS~~Fv~ 39 (717)
.||++|.|.+.+.+|+|+|.+++|..||.+ ++||++|.-
T Consensus 96 ~le~~~~l~~~~~~~~~~i~vi~~~~EEg~rf~~~~~Gs~~~~g 139 (406)
T TIGR03176 96 AWLAVDYLKEKYGAPLRTVEVLSMAEEEGSRFPYVFWGSKNIFG 139 (406)
T ss_pred HHHHHHHHHHcCCCCCCCeEEEEeccccCccCCcccccHHHHhC
Confidence 389999999878899999999999999987 999999984
No 27
>TIGR01891 amidohydrolases amidohydrolase. This model represents a subfamily of amidohydrolases which are a subset of those sequences detected by pfam01546. Included within this group are hydrolases of hippurate (N-benzylglycine), indoleacetic acid (IAA) N-conjugates of amino acids, N-acetyl-L-amino acids and aminobenzoylglutamate. These hydrolases are of the carboxypeptidase-type, most likely utilizing a zinc ion in the active site.
Probab=86.54 E-value=1 Score=49.56 Aligned_cols=54 Identities=20% Similarity=0.377 Sum_probs=41.7
Q ss_pred ChHHHHHHhcCCCCCCceEEEEecCccccCccchHHHHHhCCCccceeEEEEeccC
Q 005039 1 MLELARVMSQWAHEFKNAVIFLFNTGEEEGLNGAHSFVTQHPWSTTIRVAVDLEAM 56 (717)
Q Consensus 1 mLElaR~l~~~~~~p~rtIiFlf~~aEE~GLlGS~~Fv~~hp~~~~i~a~INlD~~ 56 (717)
||.+++.|.+.+.+++++|.|+|..+||.| .|++.+++++ +.+++.+.++.|..
T Consensus 98 ~l~a~~~l~~~~~~~~~~i~~~~~~dEE~~-~G~~~~~~~~-~~~~~d~~i~~e~~ 151 (363)
T TIGR01891 98 LLGTAKLLKKLADLLEGTVRLIFQPAEEGG-GGATKMIEDG-VLDDVDAILGLHPD 151 (363)
T ss_pred HHHHHHHHHhchhhCCceEEEEEeecCcCc-chHHHHHHCC-CCCCcCEEEEECCC
Confidence 456777777655667899999999999996 7999998654 44566778887764
No 28
>PRK07318 dipeptidase PepV; Reviewed
Probab=85.49 E-value=1.1 Score=51.19 Aligned_cols=43 Identities=14% Similarity=0.239 Sum_probs=36.4
Q ss_pred ChHHHHHHhcCCCCCCceEEEEecCccccCccchHHHHHhCCC
Q 005039 1 MLELARVMSQWAHEFKNAVIFLFNTGEEEGLNGAHSFVTQHPW 43 (717)
Q Consensus 1 mLElaR~l~~~~~~p~rtIiFlf~~aEE~GLlGS~~Fv~~hp~ 43 (717)
|+..++.|.+.+.+++++|.|+|...||.|..|++++++++++
T Consensus 126 ~l~Al~~l~~~g~~~~~~i~l~~~~DEE~g~~G~~~l~~~~~~ 168 (466)
T PRK07318 126 AYYALKIIKELGLPLSKKVRFIVGTDEESGWKCMDYYFEHEEA 168 (466)
T ss_pred HHHHHHHHHHcCCCCCccEEEEEEcccccCchhHHHHHHhCCC
Confidence 4667788877677778899999999999999999999977653
No 29
>PRK13983 diaminopimelate aminotransferase; Provisional
Probab=84.49 E-value=2.1 Score=47.40 Aligned_cols=54 Identities=17% Similarity=0.178 Sum_probs=39.5
Q ss_pred ChHHHHHHhcCCCCCCceEEEEecCccccCcc-chHHHHHhCCC-ccceeEEEEec
Q 005039 1 MLELARVMSQWAHEFKNAVIFLFNTGEEEGLN-GAHSFVTQHPW-STTIRVAVDLE 54 (717)
Q Consensus 1 mLElaR~l~~~~~~p~rtIiFlf~~aEE~GLl-GS~~Fv~~hp~-~~~i~a~INlD 54 (717)
||+.++++.+.+.+++++|.|+|..+||.|.. |++++.++++. .+...+++..|
T Consensus 125 ~l~a~~~l~~~~~~~~~~v~~~~~~dEE~g~~~g~~~~~~~~~~~~~~~d~~i~~~ 180 (400)
T PRK13983 125 SLLALKALMDLGIRPKYNLGLAFVSDEETGSKYGIQYLLKKHPELFKKDDLILVPD 180 (400)
T ss_pred HHHHHHHHHHhCCCCCCcEEEEEEeccccCCcccHHHHHhhcccccCCCCEEEEec
Confidence 46778888776667889999999999999885 89999976542 22334444443
No 30
>PRK12893 allantoate amidohydrolase; Reviewed
Probab=84.37 E-value=0.85 Score=51.06 Aligned_cols=42 Identities=21% Similarity=0.291 Sum_probs=35.9
Q ss_pred ChHHHHHHhcCCCCCCceEEEEecCccccC-----ccchHHHHHhCC
Q 005039 1 MLELARVMSQWAHEFKNAVIFLFNTGEEEG-----LNGAHSFVTQHP 42 (717)
Q Consensus 1 mLElaR~l~~~~~~p~rtIiFlf~~aEE~G-----LlGS~~Fv~~hp 42 (717)
||++++.|++.+.+++++|+|+|+.+||.| +.||..+..+++
T Consensus 103 ~l~a~~~l~~~~~~~~~~v~~~~~~dEE~g~~~~~~~G~~~~~~~~~ 149 (412)
T PRK12893 103 ALEVVRTLNDAGIRTRRPIEVVSWTNEEGARFAPAMLGSGVFTGALP 149 (412)
T ss_pred HHHHHHHHHHcCCCCCCCeEEEEEccccccccccccccHHHHhCcCC
Confidence 578899998877788999999999999996 899999985443
No 31
>PRK07473 carboxypeptidase; Provisional
Probab=84.15 E-value=2 Score=47.82 Aligned_cols=55 Identities=16% Similarity=0.155 Sum_probs=41.9
Q ss_pred ChHHHHHHhcCCCCCCceEEEEecCccccCccchHHHHHhCCCccceeEEEEeccCC
Q 005039 1 MLELARVMSQWAHEFKNAVIFLFNTGEEEGLNGAHSFVTQHPWSTTIRVAVDLEAMG 57 (717)
Q Consensus 1 mLElaR~l~~~~~~p~rtIiFlf~~aEE~GLlGS~~Fv~~hp~~~~i~a~INlD~~G 57 (717)
||+.+|++.+.+.+++.+|.|+|...||.|..|++.+++++.. +..++|-.|..+
T Consensus 120 ~l~A~~~l~~~~~~~~~~v~~~~~~dEE~g~~g~~~~~~~~~~--~~d~~iv~ep~~ 174 (376)
T PRK07473 120 ALEAIRQLARAGITTPLPITVLFTPDEEVGTPSTRDLIEAEAA--RNKYVLVPEPGR 174 (376)
T ss_pred HHHHHHHHHHcCCCCCCCEEEEEeCCcccCCccHHHHHHHhhc--cCCEEEEeCCCC
Confidence 5778888876555566789999999999999999999976543 335667667543
No 32
>PRK09104 hypothetical protein; Validated
Probab=84.09 E-value=1.2 Score=50.79 Aligned_cols=55 Identities=20% Similarity=0.232 Sum_probs=42.7
Q ss_pred ChHHHHHHhcCCCCCCceEEEEecCccccCccchHHHHHhCCCccceeEEEEecc
Q 005039 1 MLELARVMSQWAHEFKNAVIFLFNTGEEEGLNGAHSFVTQHPWSTTIRVAVDLEA 55 (717)
Q Consensus 1 mLElaR~l~~~~~~p~rtIiFlf~~aEE~GLlGS~~Fv~~hp~~~~i~a~INlD~ 55 (717)
||+.++.|.+.+.+++.+|.|++.+.||.|-.|..+|+.+.....+..++|..|.
T Consensus 136 ~l~a~~~l~~~~~~~~~~i~~~~~~dEE~g~~g~~~~l~~~~~~~~~d~~iv~E~ 190 (464)
T PRK09104 136 FVEACRAWKAVTGSLPVRVTILFEGEEESGSPSLVPFLEANAEELKADVALVCDT 190 (464)
T ss_pred HHHHHHHHHHhcCCCCCcEEEEEECccccCCccHHHHHHhhHHhcCCCEEEEeCC
Confidence 4788898887555667789999999999999999999965432224577888883
No 33
>PRK13799 unknown domain/N-carbamoyl-L-amino acid hydrolase fusion protein; Provisional
Probab=82.74 E-value=1 Score=53.30 Aligned_cols=38 Identities=8% Similarity=0.120 Sum_probs=35.6
Q ss_pred ChHHHHHHhcCCCCCCceEEEEecCcccc-----CccchHHHH
Q 005039 1 MLELARVMSQWAHEFKNAVIFLFNTGEEE-----GLNGAHSFV 38 (717)
Q Consensus 1 mLElaR~l~~~~~~p~rtIiFlf~~aEE~-----GLlGS~~Fv 38 (717)
+||++|.|.+.+.+++++|.++.|..||- +++||+++.
T Consensus 278 ~l~~~~~l~~~~~~~~~~i~vi~~~~EEg~rF~~~~~GS~~~~ 320 (591)
T PRK13799 278 AIACVKELHEQGERLPFHFEVIAFAEEEGQRFKATFLGSGALI 320 (591)
T ss_pred HHHHHHHHHHcCCCCCCCeEEEEecCCCccCCCccccchHHHh
Confidence 48999999988889999999999999997 899999997
No 34
>PRK07338 hypothetical protein; Provisional
Probab=82.63 E-value=2.2 Score=47.47 Aligned_cols=53 Identities=19% Similarity=0.130 Sum_probs=41.3
Q ss_pred ChHHHHHHhcCCCCCCceEEEEecCccccCccchHHHHHhCCCccceeEEEEecc
Q 005039 1 MLELARVMSQWAHEFKNAVIFLFNTGEEEGLNGAHSFVTQHPWSTTIRVAVDLEA 55 (717)
Q Consensus 1 mLElaR~l~~~~~~p~rtIiFlf~~aEE~GLlGS~~Fv~~hp~~~~i~a~INlD~ 55 (717)
||+.+++|.+.+.+++.+|.|+|..+||.|-.|++.+++++.. +..+.+.+|-
T Consensus 137 ~l~a~~~l~~~~~~~~~~i~~~~~~dEE~g~~g~~~~~~~~~~--~~~~~i~~ep 189 (402)
T PRK07338 137 MLAALLAFERSPLADKLGYDVLINPDEEIGSPASAPLLAELAR--GKHAALTYEP 189 (402)
T ss_pred HHHHHHHHHhcCCCCCCCEEEEEECCcccCChhhHHHHHHHhc--cCcEEEEecC
Confidence 4778888876566677899999999999999999999977642 3345555564
No 35
>PRK12890 allantoate amidohydrolase; Reviewed
Probab=82.62 E-value=1.1 Score=50.26 Aligned_cols=39 Identities=15% Similarity=0.162 Sum_probs=34.5
Q ss_pred ChHHHHHHhcCCCCCCceEEEEecCcccc-----CccchHHHHH
Q 005039 1 MLELARVMSQWAHEFKNAVIFLFNTGEEE-----GLNGAHSFVT 39 (717)
Q Consensus 1 mLElaR~l~~~~~~p~rtIiFlf~~aEE~-----GLlGS~~Fv~ 39 (717)
||++++.|.+.+.+++++|.|+++..||. |+.||+++..
T Consensus 101 ~l~a~~~l~~~~~~~~~~i~~~~~~dEE~~~~~~~~~G~~~~~~ 144 (414)
T PRK12890 101 GLEVVAALREAGIRPPHPLEVIAFTNEEGVRFGPSMIGSRALAG 144 (414)
T ss_pred HHHHHHHHHHcCCCCCCCeEEEEEecccccccCCccccHHHHHc
Confidence 57889999877778899999999999998 7899999874
No 36
>PRK12892 allantoate amidohydrolase; Reviewed
Probab=82.31 E-value=1.3 Score=49.64 Aligned_cols=41 Identities=20% Similarity=0.276 Sum_probs=35.7
Q ss_pred ChHHHHHHhcCCCCCCceEEEEecCcccc-----CccchHHHHHhC
Q 005039 1 MLELARVMSQWAHEFKNAVIFLFNTGEEE-----GLNGAHSFVTQH 41 (717)
Q Consensus 1 mLElaR~l~~~~~~p~rtIiFlf~~aEE~-----GLlGS~~Fv~~h 41 (717)
||++++.|.+.+.+++++|.|+++..||. |+.||++++.++
T Consensus 101 ~l~a~~~l~~~~~~~~~~i~~~~~~dEE~~~~~~~~~Gs~~~~~~~ 146 (412)
T PRK12892 101 GLEAARALNEHGIATRHPLDVVAWCDEEGSRFTPGFLGSRAYAGRL 146 (412)
T ss_pred HHHHHHHHHHcCCCCCCCeEEEEecCcccccccCccccHHHHHcCC
Confidence 57889999887778899999999999998 588999998544
No 37
>PRK07906 hypothetical protein; Provisional
Probab=82.31 E-value=1.1 Score=50.58 Aligned_cols=42 Identities=33% Similarity=0.561 Sum_probs=35.9
Q ss_pred ChHHHHHHhcCCCCCCceEEEEecCccccC-ccchHHHHHhCC
Q 005039 1 MLELARVMSQWAHEFKNAVIFLFNTGEEEG-LNGAHSFVTQHP 42 (717)
Q Consensus 1 mLElaR~l~~~~~~p~rtIiFlf~~aEE~G-LlGS~~Fv~~hp 42 (717)
+|+++|++++.+.+++++|.|+|+..||.| ..|++.++++++
T Consensus 113 ~l~a~~~l~~~~~~~~~~i~~~~~~dEE~g~~~g~~~l~~~~~ 155 (426)
T PRK07906 113 MLAVVRHLARTGRRPPRDLVFAFVADEEAGGTYGAHWLVDNHP 155 (426)
T ss_pred HHHHHHHHHHcCCCCCccEEEEEecCcccchhhhHHHHHHHHH
Confidence 478899998767788999999999999995 679999997654
No 38
>TIGR01883 PepT-like peptidase T-like protein. This model represents a clade of enzymes closely related to Peptidase T, an aminotripeptidase found in bacteria. This clade consists of gram positive bacteria of which several additionally contain a Peptidase T gene.
Probab=82.26 E-value=1 Score=49.30 Aligned_cols=40 Identities=33% Similarity=0.414 Sum_probs=33.4
Q ss_pred ChHHHHHHhcCCCCCCceEEEEecCccccCccchHHHHHhC
Q 005039 1 MLELARVMSQWAHEFKNAVIFLFNTGEEEGLNGAHSFVTQH 41 (717)
Q Consensus 1 mLElaR~l~~~~~~p~rtIiFlf~~aEE~GLlGS~~Fv~~h 41 (717)
||++++.|.+.+ .++++|.|+|+.+||.|..|++.|.++.
T Consensus 108 ~l~~~~~l~~~~-~~~~~v~~~~~~~EE~g~~G~~~~~~~~ 147 (361)
T TIGR01883 108 MLEAMDVLSTEE-TPHGTIEFIFTVKEELGLIGMRLFDESK 147 (361)
T ss_pred HHHHHHHHHhcC-CCCCCEEEEEEcccccCchhHhHhChhh
Confidence 578888887644 5678999999999999999999998543
No 39
>PRK13590 putative bifunctional OHCU decarboxylase/allantoate amidohydrolase; Provisional
Probab=82.20 E-value=1.1 Score=53.02 Aligned_cols=38 Identities=11% Similarity=0.114 Sum_probs=34.6
Q ss_pred ChHHHHHHhcCCCCCCceEEEEecCcccc-----CccchHHHH
Q 005039 1 MLELARVMSQWAHEFKNAVIFLFNTGEEE-----GLNGAHSFV 38 (717)
Q Consensus 1 mLElaR~l~~~~~~p~rtIiFlf~~aEE~-----GLlGS~~Fv 38 (717)
+||++|.|.+.+.+++++|.|++|..||. +++||+.+.
T Consensus 278 ~lea~~~l~~~~~~~~~~i~vv~~~~EEg~rF~~~~~GS~~~~ 320 (591)
T PRK13590 278 PMACVRELHRQGRRLPFGLEVVGFAEEEGQRYKATFLGSGALI 320 (591)
T ss_pred HHHHHHHHHHcCCCCCCCeEEEEecCCccccCCccccchHHHh
Confidence 58999999987778889999999999997 699999986
No 40
>PRK09290 allantoate amidohydrolase; Reviewed
Probab=81.30 E-value=1.4 Score=49.41 Aligned_cols=42 Identities=19% Similarity=0.219 Sum_probs=35.7
Q ss_pred ChHHHHHHhcCCCCCCceEEEEecCcccc-----CccchHHHHHhCC
Q 005039 1 MLELARVMSQWAHEFKNAVIFLFNTGEEE-----GLNGAHSFVTQHP 42 (717)
Q Consensus 1 mLElaR~l~~~~~~p~rtIiFlf~~aEE~-----GLlGS~~Fv~~hp 42 (717)
|+++++.|.+.+.+++++|+|+++..||. |++|+++++++++
T Consensus 100 ~l~a~~~l~~~~~~~~~~i~~~~~~dEE~g~~g~~~~G~~~~~~~~~ 146 (413)
T PRK09290 100 GLEAVRTLNERGIRPRRPIEVVAFTNEEGSRFGPAMLGSRVFTGALT 146 (413)
T ss_pred HHHHHHHHHHcCCCCCCCeEEEEEcCCccccccCccccHHHHHcccC
Confidence 57888999877777899999999999998 6889999986553
No 41
>PRK08651 succinyl-diaminopimelate desuccinylase; Reviewed
Probab=80.83 E-value=2.2 Score=47.28 Aligned_cols=52 Identities=17% Similarity=0.144 Sum_probs=38.9
Q ss_pred ChHHHHHHhcCCCCCCceEEEEecCccccCccchHHHHHhCCCccceeEEEEeccCC
Q 005039 1 MLELARVMSQWAHEFKNAVIFLFNTGEEEGLNGAHSFVTQHPWSTTIRVAVDLEAMG 57 (717)
Q Consensus 1 mLElaR~l~~~~~~p~rtIiFlf~~aEE~GLlGS~~Fv~~hp~~~~i~a~INlD~~G 57 (717)
||+.+|.+.+.+ +++|.|+|..+||.|..|++++++++.. +....+..|..|
T Consensus 122 ~l~a~~~l~~~~---~~~v~~~~~~~EE~g~~G~~~~~~~~~~--~~d~~i~~~~~~ 173 (394)
T PRK08651 122 LLAAFERLDPAG---DGNIELAIVPDEETGGTGTGYLVEEGKV--TPDYVIVGEPSG 173 (394)
T ss_pred HHHHHHHHHhcC---CCCEEEEEecCccccchhHHHHHhccCC--CCCEEEEecCCC
Confidence 577888887533 7899999999999998999999976543 234555555444
No 42
>KOG2275 consensus Aminoacylase ACY1 and related metalloexopeptidases [Amino acid transport and metabolism]
Probab=80.46 E-value=1.9 Score=48.34 Aligned_cols=54 Identities=20% Similarity=0.224 Sum_probs=42.8
Q ss_pred ChHHHHHHhcCCCCCCceEEEEecCccccC-ccchHHHHHhCCCccceeEEEEecc
Q 005039 1 MLELARVMSQWAHEFKNAVIFLFNTGEEEG-LNGAHSFVTQHPWSTTIRVAVDLEA 55 (717)
Q Consensus 1 mLElaR~l~~~~~~p~rtIiFlf~~aEE~G-LlGS~~Fv~~hp~~~~i~a~INlD~ 55 (717)
+||.+|.|..++.+|+|+|...|--+||.| -+|.+.|++ +...++....+=+|=
T Consensus 137 ~leAir~L~~~g~kp~Rti~lsfvpDEEi~G~~Gm~~fa~-~~~~~~l~~~filDE 191 (420)
T KOG2275|consen 137 YLEAIRNLKASGFKPKRTIHLSFVPDEEIGGHIGMKEFAK-TEEFKKLNLGFILDE 191 (420)
T ss_pred HHHHHHHHHhcCCCcCceEEEEecCchhccCcchHHHHhh-hhhhcccceeEEecC
Confidence 489999999889999999999999999987 999999994 544444444444443
No 43
>TIGR01886 dipeptidase dipeptidase PepV. This model represents a small clade of dipeptidase enzymes which are members of the larger M25 subfamily of metalloproteases. Two characterized enzymes are included in the seed. One, from Lactococcus lactis has been shown to act on a wide range of dipeptides, but not larger peptides. The enzyme from Lactobacillus delbrueckii was originally characterized as a Xaa-His dipeptidase, specifically a carnosinase (beta-Ala-His) by complementation of an E. coli mutant. Further study, including the crystallization of the enzyme, has shown it to also be a non-specific dipeptidase. This group also includes enzymes from Streptococcus and Enterococcus.
Probab=80.05 E-value=1.7 Score=49.85 Aligned_cols=42 Identities=12% Similarity=0.218 Sum_probs=36.1
Q ss_pred ChHHHHHHhcCCCCCCceEEEEecCccccCccchHHHHHhCC
Q 005039 1 MLELARVMSQWAHEFKNAVIFLFNTGEEEGLNGAHSFVTQHP 42 (717)
Q Consensus 1 mLElaR~l~~~~~~p~rtIiFlf~~aEE~GLlGS~~Fv~~hp 42 (717)
+|..+++|.+.+.+++++|+|++...||.|..|+++|+++++
T Consensus 125 ~l~a~~~l~~~~~~~~~~i~~~~~~dEE~g~~g~~~~~~~~~ 166 (466)
T TIGR01886 125 AYYAMKILKELGLPPSKKIRFVVGTNEETGWVDMDYYFKHEE 166 (466)
T ss_pred HHHHHHHHHHhCCCCCCCEEEEEECccccCcccHHHHHhcCc
Confidence 356678887767788999999999999999999999997665
No 44
>PRK07079 hypothetical protein; Provisional
Probab=79.54 E-value=2.1 Score=49.01 Aligned_cols=53 Identities=21% Similarity=0.188 Sum_probs=39.5
Q ss_pred hHHHHHHhcC-CCCCCceEEEEecCccccCccchHHHHHhCCCccceeEEEEec
Q 005039 2 LELARVMSQW-AHEFKNAVIFLFNTGEEEGLNGAHSFVTQHPWSTTIRVAVDLE 54 (717)
Q Consensus 2 LElaR~l~~~-~~~p~rtIiFlf~~aEE~GLlGS~~Fv~~hp~~~~i~a~INlD 54 (717)
|+.++++.+. +.+++++|+|++...||.|..|++.++++++-.-+..++|..|
T Consensus 136 l~A~~~l~~~~~~~~~~~i~~~~~~dEE~g~~G~~~l~~~~~~~~~~d~~iv~e 189 (469)
T PRK07079 136 LAALEQVLAARGGRLGFNVKLLIEMGEEIGSPGLAEVCRQHREALAADVLIASD 189 (469)
T ss_pred HHHHHHHHHhcCCCCCCCEEEEEECccccCCccHHHHHHHhHHhcCCCEEEEeC
Confidence 5677777543 3678899999999999999999999998875221234555555
No 45
>PRK05469 peptidase T; Provisional
Probab=79.41 E-value=2.7 Score=47.02 Aligned_cols=39 Identities=18% Similarity=0.271 Sum_probs=32.3
Q ss_pred ChHHHHHHhcCCCCCCceEEEEecCccccCccchHHHHHh
Q 005039 1 MLELARVMSQWAHEFKNAVIFLFNTGEEEGLNGAHSFVTQ 40 (717)
Q Consensus 1 mLElaR~l~~~~~~p~rtIiFlf~~aEE~GLlGS~~Fv~~ 40 (717)
||..+++|.+.+..++.+|+|+|..+||.| .|++.++.+
T Consensus 148 ~l~a~~~l~~~~~~~~g~v~~~f~~dEE~g-~Ga~~~~~~ 186 (408)
T PRK05469 148 IMTALEYLIAHPEIKHGDIRVAFTPDEEIG-RGADKFDVE 186 (408)
T ss_pred HHHHHHHHHhCCCCCCCCEEEEEecccccC-CCHHHhhhh
Confidence 467888887655567789999999999999 899998743
No 46
>PRK07205 hypothetical protein; Provisional
Probab=78.92 E-value=2.2 Score=48.47 Aligned_cols=42 Identities=17% Similarity=0.246 Sum_probs=36.0
Q ss_pred ChHHHHHHhcCCCCCCceEEEEecCccccCccchHHHHHhCC
Q 005039 1 MLELARVMSQWAHEFKNAVIFLFNTGEEEGLNGAHSFVTQHP 42 (717)
Q Consensus 1 mLElaR~l~~~~~~p~rtIiFlf~~aEE~GLlGS~~Fv~~hp 42 (717)
||+.+++|.+.+.+++++|+|+|.+.||.|..|++.|.++.+
T Consensus 124 ~l~Al~~l~~~~~~~~~~i~l~~~~dEE~g~~g~~~~~~~~~ 165 (444)
T PRK07205 124 ALYAVKALLDAGVQFNKRIRFIFGTDEETLWRCMNRYNEVEE 165 (444)
T ss_pred HHHHHHHHHHcCCCCCCcEEEEEECCcccCcccHHHHHhCCC
Confidence 467788887777788899999999999999999999996544
No 47
>KOG2526 consensus Predicted aminopeptidases - M20/M25/M40 family [Amino acid transport and metabolism]
Probab=78.60 E-value=3.1 Score=46.74 Aligned_cols=148 Identities=13% Similarity=0.213 Sum_probs=87.3
Q ss_pred ChHHHHHHhcC----CCCCCceEEEEecCccccCccchHHHHHhC--CCccceeEEEEeccCCCCCcceEEEeC-C--Ch
Q 005039 1 MLELARVMSQW----AHEFKNAVIFLFNTGEEEGLNGAHSFVTQH--PWSTTIRVAVDLEAMGIGGRSALFQAG-P--NL 71 (717)
Q Consensus 1 mLElaR~l~~~----~~~p~rtIiFlf~~aEE~GLlGS~~Fv~~h--p~~~~i~a~INlD~~G~gG~~~lf~~g-~--~~ 71 (717)
+||+||.+++. ..+++..+.|+..+|--..-+|++.|.+-. ...+++..+|=+|.+|++..++..-.+ | +.
T Consensus 245 LLelarlfSkly~ypsTrakYnLlF~lt~aG~lNyqGTkkWLe~dd~~lq~nVdfaiCLdtig~~~s~l~mHvsKpP~dn 324 (555)
T KOG2526|consen 245 LLELARLFSKLYDYPSTRAKYNLLFILTAAGKLNYQGTKKWLEFDDADLQKNVDFAICLDTIGRKTSGLFMHVSKPPSDN 324 (555)
T ss_pred HHHHHHHHHHHhcCcccccceeEEEEEccCccccccchhhhhhcchHHHHhcccEEEEhhhhccccCceEEEccCCCCcc
Confidence 58999999863 346799999999999999999999999632 235799999999999998555433333 2 22
Q ss_pred HH----HHHHHHhcCCCC-CccccccccccCCCCC---CCChHhhhhcCCCcEEEEeeeCCC--CCCCCCC-CCcCCCCH
Q 005039 72 WA----VENFAAVAKYPS-GQIIGQDLFASGVFET---ATDFQVYTEVAGLSGLDFAYTDKS--AVYHTKN-DRLDLLKP 140 (717)
Q Consensus 72 ~L----~~~y~~~a~~P~-~~~~~~~~f~~g~ips---dTD~~~F~~~~GIPgLd~a~~~~~--~~YHT~~-Dt~d~i~~ 140 (717)
.. .+.++..+.+-. .-++. .-+.. +.+ .=.|.-|.. ..+|+..+...... ..-.+-. |+-..++.
T Consensus 325 t~i~qffr~l~svAek~~~~v~~k--hkkIn-la~s~lAWEHErFsi-kR~pAfTLS~l~Sprdp~rnsi~~d~rsrlde 400 (555)
T KOG2526|consen 325 TVIAQFFRRLNSVAEKKNIEVVTK--HKKIN-LASSRLAWEHERFSI-KRMPAFTLSTLPSPRDPARNSILLDLRSRLDE 400 (555)
T ss_pred hHHHHHHHHhhhhchhcceEEEEE--eeeEe-eccchhhhhhhhhhh-hcccceeeccCCCCcchhhccccccchhhhhh
Confidence 22 233333222211 10000 00000 011 113667765 66888777654322 2223333 77777777
Q ss_pred hHHHHHHHHHHH
Q 005039 141 GSLQHLGENMLD 152 (717)
Q Consensus 141 ~slq~~g~~~l~ 152 (717)
+++-.....+..
T Consensus 401 dtLi~ntRlIaE 412 (555)
T KOG2526|consen 401 DTLIDNTRLIAE 412 (555)
T ss_pred hhhhhhhhHHHH
Confidence 776654444433
No 48
>TIGR01892 AcOrn-deacetyl acetylornithine deacetylase (ArgE). This model represents a clade of acetylornithine deacetylases from proteobacteria. This enzyme is the final step of the "acetylated" ornithine biosynthesis pathway. The enzyme is closely related to dapE, succinyl-diaminopimelate desuccinylase, and outside of this clade annotation is very inaccurate as to which function should be ascribed to genes.
Probab=78.43 E-value=2.9 Score=45.59 Aligned_cols=40 Identities=20% Similarity=0.284 Sum_probs=33.6
Q ss_pred ChHHHHHHhcCCCCCCceEEEEecCccccCccchHHHHHhCC
Q 005039 1 MLELARVMSQWAHEFKNAVIFLFNTGEEEGLNGAHSFVTQHP 42 (717)
Q Consensus 1 mLElaR~l~~~~~~p~rtIiFlf~~aEE~GLlGS~~Fv~~hp 42 (717)
+|+++++|.+. +.+++|.|+|..+||.|..|++.++++.+
T Consensus 106 ~l~a~~~l~~~--~~~~~v~~~~~~~EE~g~~G~~~~~~~~~ 145 (364)
T TIGR01892 106 ALAAAPDLAAE--QLKKPLHLALTADEEVGCTGAPKMIEAGA 145 (364)
T ss_pred HHHHHHHHHhc--CcCCCEEEEEEeccccCCcCHHHHHHhcC
Confidence 47788888753 46789999999999999999999997654
No 49
>PRK13013 succinyl-diaminopimelate desuccinylase; Reviewed
Probab=78.31 E-value=2.9 Score=46.91 Aligned_cols=54 Identities=13% Similarity=0.091 Sum_probs=38.1
Q ss_pred ChHHHHHHhcCCCCCCceEEEEecCccccCcc-chHHHHHhCCCcc--ceeEEEEecc
Q 005039 1 MLELARVMSQWAHEFKNAVIFLFNTGEEEGLN-GAHSFVTQHPWST--TIRVAVDLEA 55 (717)
Q Consensus 1 mLElaR~l~~~~~~p~rtIiFlf~~aEE~GLl-GS~~Fv~~hp~~~--~i~a~INlD~ 55 (717)
||..+++|++.+.+++++|+|+|..+||.|-. |.++++ +....+ +..++|..|-
T Consensus 131 ~l~a~~~l~~~~~~~~~~v~~~~~~dEE~g~~~g~~~l~-~~~~~~~~~~d~~i~~ep 187 (427)
T PRK13013 131 SIIAAEAFLAVYPDFAGSIEISGTADEESGGFGGVAYLA-EQGRFSPDRVQHVIIPEP 187 (427)
T ss_pred HHHHHHHHHHhCCCCCccEEEEEEeccccCChhHHHHHH-hcCCccccCCCEEEEecC
Confidence 47788888876667789999999999999866 455554 444332 4456666663
No 50
>PRK12891 allantoate amidohydrolase; Reviewed
Probab=78.10 E-value=1.9 Score=48.59 Aligned_cols=38 Identities=26% Similarity=0.308 Sum_probs=33.6
Q ss_pred ChHHHHHHhcCCCCCCceEEEEecCccccC-----ccchHHHH
Q 005039 1 MLELARVMSQWAHEFKNAVIFLFNTGEEEG-----LNGAHSFV 38 (717)
Q Consensus 1 mLElaR~l~~~~~~p~rtIiFlf~~aEE~G-----LlGS~~Fv 38 (717)
+|+++|.|.+.+.+++++|.++++..||.| +.||+++.
T Consensus 103 ~l~a~~~l~~~~~~~~~~i~v~~~~dEE~~~f~~~~~Gs~~~~ 145 (414)
T PRK12891 103 GLEVVRALNDAGIETERPVDVVIWTNEEGSRFAPSMVGSGVFF 145 (414)
T ss_pred HHHHHHHHHHcCCCCCCCeEEEEecccccCcCCcccccHHHHh
Confidence 578999998877889999999999999985 68999875
No 51
>PRK08201 hypothetical protein; Provisional
Probab=75.66 E-value=5.2 Score=45.54 Aligned_cols=56 Identities=18% Similarity=0.145 Sum_probs=41.1
Q ss_pred ChHHHHHHhcCCCCCCceEEEEecCccccCccchHHHHHhCCCccceeEEEEeccC
Q 005039 1 MLELARVMSQWAHEFKNAVIFLFNTGEEEGLNGAHSFVTQHPWSTTIRVAVDLEAM 56 (717)
Q Consensus 1 mLElaR~l~~~~~~p~rtIiFlf~~aEE~GLlGS~~Fv~~hp~~~~i~a~INlD~~ 56 (717)
||+.++.+.+.+..++++|.|++...||.|-.|+..++++++..-+..++|..|..
T Consensus 128 ~l~a~~~l~~~~~~~~~~i~~~~~~dEE~g~~g~~~~l~~~~~~~~~d~~ii~e~~ 183 (456)
T PRK08201 128 HLKAVEALLKVEGTLPVNVKFCIEGEEEIGSPNLDSFVEEEKDKLAADVVLISDTT 183 (456)
T ss_pred HHHHHHHHHHhcCCCCCCEEEEEEcccccCCccHHHHHHhhHHhccCCEEEEeCCC
Confidence 46778888654556678999999999999999999999765421123566666643
No 52
>TIGR01887 dipeptidaselike dipeptidase, putative. This model represents a clade of probable zinc dipeptidases, closely related to the characterized non-specific dipeptidase, PepV. Many enzymes in this clade have been given names including the terms "Xaa-His" and "carnosinase" due to the early mis-characterization of the Lactobacillus delbrueckii PepV enzyme. These names are likely too specific.
Probab=75.17 E-value=2.7 Score=48.02 Aligned_cols=41 Identities=20% Similarity=0.403 Sum_probs=34.8
Q ss_pred ChHHHHHHhcCCCCCCceEEEEecCccccCccchHHHHHhC
Q 005039 1 MLELARVMSQWAHEFKNAVIFLFNTGEEEGLNGAHSFVTQH 41 (717)
Q Consensus 1 mLElaR~l~~~~~~p~rtIiFlf~~aEE~GLlGS~~Fv~~h 41 (717)
|++.++.|.+.+.+++++|.|+|...||.|..|++.|++++
T Consensus 114 ~l~a~~~l~~~~~~~~~~i~~~~~~dEE~g~~g~~~~l~~~ 154 (447)
T TIGR01887 114 ALYAMKILKELGLKLKKKIRFIFGTDEETGWACIDYYFEHE 154 (447)
T ss_pred HHHHHHHHHHcCCCCCCcEEEEEECCcccCcHhHHHHHHhc
Confidence 46777888776667889999999999999999999999643
No 53
>PRK08652 acetylornithine deacetylase; Provisional
Probab=74.59 E-value=4.1 Score=44.16 Aligned_cols=49 Identities=24% Similarity=0.224 Sum_probs=37.1
Q ss_pred ChHHHHHHhcCCCCCCceEEEEecCccccCccchHHHHHhCCCccceeEEEEecc
Q 005039 1 MLELARVMSQWAHEFKNAVIFLFNTGEEEGLNGAHSFVTQHPWSTTIRVAVDLEA 55 (717)
Q Consensus 1 mLElaR~l~~~~~~p~rtIiFlf~~aEE~GLlGS~~Fv~~hp~~~~i~a~INlD~ 55 (717)
||+.++.|.+ ..++++|+|+|..+||.|..|++.++++++- ...|..|-
T Consensus 95 ~l~a~~~l~~--~~~~~~v~~~~~~dEE~g~~G~~~~~~~~~~----d~~i~~ep 143 (347)
T PRK08652 95 ILLALEELGK--EFEDLNVGIAFVSDEEEGGRGSALFAERYRP----KMAIVLEP 143 (347)
T ss_pred HHHHHHHHhh--cccCCCEEEEEecCcccCChhHHHHHHhcCC----CEEEEecC
Confidence 5778888874 2346799999999999998999999976531 45666664
No 54
>TIGR01880 Ac-peptdase-euk N-acyl-L-amino-acid amidohydrolase. This model represents a family of eukaryotic N-acyl-L-amino-acid amidohydrolases active on fatty acid and acetyl amides of L-amino acids.
Probab=74.56 E-value=3.9 Score=45.61 Aligned_cols=40 Identities=28% Similarity=0.424 Sum_probs=33.9
Q ss_pred ChHHHHHHhcCCCCCCceEEEEecCccccC-ccchHHHHHh
Q 005039 1 MLELARVMSQWAHEFKNAVIFLFNTGEEEG-LNGAHSFVTQ 40 (717)
Q Consensus 1 mLElaR~l~~~~~~p~rtIiFlf~~aEE~G-LlGS~~Fv~~ 40 (717)
||+.+|.|.+.+.+++++|.|+|..+||.| ..|++.++++
T Consensus 120 ~l~a~~~l~~~~~~~~~~v~l~~~~dEE~g~~~G~~~~~~~ 160 (400)
T TIGR01880 120 YLEAVRNLKASGFKFKRTIHISFVPDEEIGGHDGMEKFAKT 160 (400)
T ss_pred HHHHHHHHHHcCCCCCceEEEEEeCCcccCcHhHHHHHHHh
Confidence 578888898766778899999999999997 4699999954
No 55
>PRK08262 hypothetical protein; Provisional
Probab=74.09 E-value=3.2 Score=47.69 Aligned_cols=40 Identities=23% Similarity=0.306 Sum_probs=34.3
Q ss_pred ChHHHHHHhcCCCCCCceEEEEecCccccCccchHHHHHh
Q 005039 1 MLELARVMSQWAHEFKNAVIFLFNTGEEEGLNGAHSFVTQ 40 (717)
Q Consensus 1 mLElaR~l~~~~~~p~rtIiFlf~~aEE~GLlGS~~Fv~~ 40 (717)
||+.+|.+.+.+.+++++|.|+|..+||.|..|++.+++.
T Consensus 162 ~L~A~~~l~~~~~~l~~~I~llf~~dEE~g~~G~~~l~~~ 201 (486)
T PRK08262 162 ILEAAEALLAQGFQPRRTIYLAFGHDEEVGGLGARAIAEL 201 (486)
T ss_pred HHHHHHHHHHcCCCCCCeEEEEEecccccCCcCHHHHHHH
Confidence 4778888887666788999999999999998999998853
No 56
>PRK07907 hypothetical protein; Provisional
Probab=73.49 E-value=4.2 Score=46.20 Aligned_cols=52 Identities=19% Similarity=0.239 Sum_probs=38.1
Q ss_pred ChHHHHHHhcCCCCCCceEEEEecCccccCccchHHHHHhCCCccceeEEEEecc
Q 005039 1 MLELARVMSQWAHEFKNAVIFLFNTGEEEGLNGAHSFVTQHPWSTTIRVAVDLEA 55 (717)
Q Consensus 1 mLElaR~l~~~~~~p~rtIiFlf~~aEE~GLlGS~~Fv~~hp~~~~i~a~INlD~ 55 (717)
+|+.+++| +.+++++|.|++.+.||.|-.|++++++++....+..++|..|.
T Consensus 132 ~l~a~~~l---~~~~~~~i~~~~~~dEE~g~~g~~~~l~~~~~~~~~d~~iv~E~ 183 (449)
T PRK07907 132 HLAALRAL---GGDLPVGVTVFVEGEEEMGSPSLERLLAEHPDLLAADVIVIADS 183 (449)
T ss_pred HHHHHHHh---ccCCCCcEEEEEEcCcccCCccHHHHHHhchHhhcCCEEEEecC
Confidence 35667777 24567899999999999999999999977643233455665554
No 57
>PRK05111 acetylornithine deacetylase; Provisional
Probab=72.10 E-value=5.5 Score=43.95 Aligned_cols=40 Identities=25% Similarity=0.423 Sum_probs=32.5
Q ss_pred ChHHHHHHhcCCCCCCceEEEEecCccccCccchHHHHHhCC
Q 005039 1 MLELARVMSQWAHEFKNAVIFLFNTGEEEGLNGAHSFVTQHP 42 (717)
Q Consensus 1 mLElaR~l~~~~~~p~rtIiFlf~~aEE~GLlGS~~Fv~~hp 42 (717)
||+.+|.|.+ .+++++|+|+|..+||.|..|++.++++..
T Consensus 119 ~l~a~~~l~~--~~~~~~i~~~~~~~EE~g~~G~~~~~~~~~ 158 (383)
T PRK05111 119 ILEALRDIDL--TKLKKPLYILATADEETSMAGARAFAEATA 158 (383)
T ss_pred HHHHHHHHhh--cCCCCCeEEEEEeccccCcccHHHHHhcCC
Confidence 4677888865 345688999999999999999999996543
No 58
>PRK13009 succinyl-diaminopimelate desuccinylase; Reviewed
Probab=69.74 E-value=4.3 Score=44.63 Aligned_cols=39 Identities=21% Similarity=0.328 Sum_probs=32.0
Q ss_pred ChHHHHHHhcCCCCCCceEEEEecCccccC-ccchHHHHH
Q 005039 1 MLELARVMSQWAHEFKNAVIFLFNTGEEEG-LNGAHSFVT 39 (717)
Q Consensus 1 mLElaR~l~~~~~~p~rtIiFlf~~aEE~G-LlGS~~Fv~ 39 (717)
||+.++.+.+.+.+++++|+|++..+||.| ..|++.+++
T Consensus 107 ~l~a~~~l~~~~~~~~~~i~~~~~~~EE~~~~~G~~~~~~ 146 (375)
T PRK13009 107 FVVAAERFVAAHPDHKGSIAFLITSDEEGPAINGTVKVLE 146 (375)
T ss_pred HHHHHHHHHHhcCCCCceEEEEEEeecccccccCHHHHHH
Confidence 467788887666678899999999999985 569999874
No 59
>TIGR01900 dapE-gram_pos succinyl-diaminopimelate desuccinylase. This enzyme is involved in the biosynthesis of lysine, and is related to the enzyme acetylornithine deacetylase and other amidases and peptidases found within pfam01546.
Probab=68.51 E-value=8.3 Score=42.80 Aligned_cols=56 Identities=25% Similarity=0.214 Sum_probs=40.5
Q ss_pred ChHHHHHHhc--CCCCCCceEEEEecCccccC--ccchHHHHHhCCCccceeEEEEeccC
Q 005039 1 MLELARVMSQ--WAHEFKNAVIFLFNTGEEEG--LNGAHSFVTQHPWSTTIRVAVDLEAM 56 (717)
Q Consensus 1 mLElaR~l~~--~~~~p~rtIiFlf~~aEE~G--LlGS~~Fv~~hp~~~~i~a~INlD~~ 56 (717)
||+.++.+.+ .+..++++|.|+|..+||.| ..|+..++++++-..+..++|..|-.
T Consensus 111 ~l~a~~~l~~~~~~~~~~~~i~~~~~~dEE~~~~~~G~~~~~~~~~~~~~~d~~iv~Ept 170 (373)
T TIGR01900 111 MLHLAATLDGRAPETELKHDLTLIAYDCEEVAAEKNGLGHIRDAHPDWLAADFAIIGEPT 170 (373)
T ss_pred HHHHHHHHhhhccccCCCCCEEEEEEecccccCCCCCHHHHHHhCcccccCCEEEEECCC
Confidence 4677888843 24467889999999999986 36999999776533345666766643
No 60
>PRK06446 hypothetical protein; Provisional
Probab=68.08 E-value=5.5 Score=45.12 Aligned_cols=51 Identities=18% Similarity=0.218 Sum_probs=36.8
Q ss_pred ChHHHHHHhcCCCCCCceEEEEecCccccCccchHHHHHhCCCccceeEEEE
Q 005039 1 MLELARVMSQWAHEFKNAVIFLFNTGEEEGLNGAHSFVTQHPWSTTIRVAVD 52 (717)
Q Consensus 1 mLElaR~l~~~~~~p~rtIiFlf~~aEE~GLlGS~~Fv~~hp~~~~i~a~IN 52 (717)
||..++.+.+. .+++.+|.|+|...||.|-.|+++++++|+-.-+..++|.
T Consensus 111 ~l~A~~~l~~~-~~~~~~i~~~~~~dEE~g~~g~~~~l~~~~~~~~~d~vi~ 161 (436)
T PRK06446 111 RLFAIKHLIDK-HKLNVNVKFLYEGEEEIGSPNLEDFIEKNKNKLKADSVIM 161 (436)
T ss_pred HHHHHHHHHHc-CCCCCCEEEEEEcccccCCHhHHHHHHHHHHHhCCCEEEE
Confidence 45667777543 3567899999999999999999999988753212344553
No 61
>PLN02693 IAA-amino acid hydrolase
Probab=67.21 E-value=6.4 Score=44.87 Aligned_cols=40 Identities=28% Similarity=0.625 Sum_probs=32.1
Q ss_pred ChHHHHHHhcCCCCCCceEEEEecCccccCccchHHHHHhC
Q 005039 1 MLELARVMSQWAHEFKNAVIFLFNTGEEEGLNGAHSFVTQH 41 (717)
Q Consensus 1 mLElaR~l~~~~~~p~rtIiFlf~~aEE~GLlGS~~Fv~~h 41 (717)
||..+++|++.+.+.+.+|+|+|..+|| +..|++.++++.
T Consensus 144 ~l~Aa~~L~~~~~~~~g~V~~if~pdEE-~~~Ga~~~i~~g 183 (437)
T PLN02693 144 LLGAAKILQEHRHHLQGTVVLIFQPAEE-GLSGAKKMREEG 183 (437)
T ss_pred HHHHHHHHHhCcccCCceEEEEEEEccc-chhhHHHHHHCC
Confidence 4677888876555667899999999999 557999999653
No 62
>PF04114 Gaa1: Gaa1-like, GPI transamidase component ; InterPro: IPR007246 GPI (glycosyl phosphatidyl inositol) transamidase is a multiprotein complex required for a terminal step of adding the glycosylphosphatidylinositol (GPI) anchor attachment onto proteins. Gpi16, Gpi8 and Gaa1 form a sub-complex of the GPI transamidase.; GO: 0016021 integral to membrane, 0042765 GPI-anchor transamidase complex
Probab=65.88 E-value=1e+02 Score=36.16 Aligned_cols=143 Identities=18% Similarity=0.266 Sum_probs=81.3
Q ss_pred ChHHHHHHhcCCCCCCceEEEEecCccccCccchHHHHHhC-C----------C---ccceeEEEEeccCCCCCcce--E
Q 005039 1 MLELARVMSQWAHEFKNAVIFLFNTGEEEGLNGAHSFVTQH-P----------W---STTIRVAVDLEAMGIGGRSA--L 64 (717)
Q Consensus 1 mLElaR~l~~~~~~p~rtIiFlf~~aEE~GLlGS~~Fv~~h-p----------~---~~~i~a~INlD~~G~gG~~~--l 64 (717)
+|.++|++++.. ---++|+|++.|.| ..|.++|++++ . . +..+++.+|+|-.+.....+ .
T Consensus 42 ~lal~~~~~~~~-~wsKDii~l~~~~~---~~g~~awl~~Yh~~~~~~~~~~~l~~~~G~i~aAl~le~~~~~~~~v~i~ 117 (504)
T PF04114_consen 42 ALALARYFRRQS-YWSKDIIFLFTDDE---LAGMQAWLEAYHDSNTKGLSSSPLPLRAGSIQAALVLEYPSDSFSSVEIK 117 (504)
T ss_pred HHHHHHHhhhch-hhhccEEEEecCCc---chHHHHHHHHHhCCCCccccccCCCCCCcceeEEEEEEecCCCccEEEEE
Confidence 367889998643 23799999999865 46778999763 1 1 23688999999987654443 3
Q ss_pred EEeC-----CChHHHHHHHHhcC-C--CC--Cccc------------------cccccccCC-CCCCCChHhhhhcCCCc
Q 005039 65 FQAG-----PNLWAVENFAAVAK-Y--PS--GQII------------------GQDLFASGV-FETATDFQVYTEVAGLS 115 (717)
Q Consensus 65 f~~g-----~~~~L~~~y~~~a~-~--P~--~~~~------------------~~~~f~~g~-ipsdTD~~~F~~~~GIP 115 (717)
.+ | ||-.++....+.+. . +- .... ...+.+.+. .|. .+|..|.+ .+|.
T Consensus 118 ~e-G~NGqLPNLDL~N~~~~i~~~~gi~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~a~g~p~-g~H~~f~~-y~I~ 194 (504)
T PF04114_consen 118 YE-GLNGQLPNLDLVNTVVRIAEKEGIPMGVSLHLQPSDWHSNSDYESRLKTLLRGMLNQALGGPT-GPHGAFLR-YRID 194 (504)
T ss_pred Ee-cCCCCCCCchHHHHHHHHHHhcCCCccccccccccccccccchHHHHHHHHHHHHHhccCCCC-CCchhhhh-cCcc
Confidence 33 4 33445554333211 1 11 0000 000111111 233 36889998 7899
Q ss_pred EEEEeeeCCCCCCCCCCCCcCCCCHhHHHHHHHHHHHHHHHHhcCC
Q 005039 116 GLDFAYTDKSAVYHTKNDRLDLLKPGSLQHLGENMLDFLLQTASST 161 (717)
Q Consensus 116 gLd~a~~~~~~~YHT~~Dt~d~i~~~slq~~g~~~l~lv~~la~~~ 161 (717)
++.+.-.... .+ ......++|..+-.++|.+-|-.
T Consensus 195 aiTl~~~~~~------~~-----~~~~~~~~gr~~E~~~RslNNLl 229 (504)
T PF04114_consen 195 AITLRGVKST------GP-----GPHDFTAFGRILEGIFRSLNNLL 229 (504)
T ss_pred EEEEecccCC------CC-----CCcCHHHHHHHHHHHHHHHHHHH
Confidence 8887211110 11 01234577888888888888743
No 63
>PRK04443 acetyl-lysine deacetylase; Provisional
Probab=65.66 E-value=8.4 Score=42.14 Aligned_cols=49 Identities=16% Similarity=0.096 Sum_probs=36.5
Q ss_pred ChHHHHHHhcCCCCCCceEEEEecCccccCccchHHHHHhCCCccceeEEEEecc
Q 005039 1 MLELARVMSQWAHEFKNAVIFLFNTGEEEGLNGAHSFVTQHPWSTTIRVAVDLEA 55 (717)
Q Consensus 1 mLElaR~l~~~~~~p~rtIiFlf~~aEE~GLlGS~~Fv~~hp~~~~i~a~INlD~ 55 (717)
||+.+++| +.+++++|.|++..+||.|..|...+..+. . +..++|..|-
T Consensus 99 ~l~A~~~l---~~~~~~~i~~~~~~dEE~g~~~~~~~l~~~-~--~~d~~iv~Ep 147 (348)
T PRK04443 99 FAAAAARL---EALVRARVSFVGAVEEEAPSSGGARLVADR-E--RPDAVIIGEP 147 (348)
T ss_pred HHHHHHHh---cccCCCCEEEEEEcccccCChhHHHHHHhc-c--CCCEEEEeCC
Confidence 46777777 346788999999999999988877777543 2 3566777773
No 64
>TIGR01893 aa-his-dipept aminoacyl-histidine dipeptidase.
Probab=65.54 E-value=5.6 Score=45.68 Aligned_cols=41 Identities=17% Similarity=0.302 Sum_probs=31.6
Q ss_pred CCCceEEEEecCccccCccchHHHHHhCCCccceeEEEEeccCC
Q 005039 14 EFKNAVIFLFNTGEEEGLNGAHSFVTQHPWSTTIRVAVDLEAMG 57 (717)
Q Consensus 14 ~p~rtIiFlf~~aEE~GLlGS~~Fv~~hp~~~~i~a~INlD~~G 57 (717)
.++++|.++|+..||.|+.||+++..+ . .+.+..+|.|..+
T Consensus 126 ~~~~~i~~~~~~dEE~g~~Gs~~l~~~-~--~~~~~~~~~d~~~ 166 (477)
T TIGR01893 126 LKHPPLELLFTVDEETGMDGALGLDEN-W--LSGKILINIDSEE 166 (477)
T ss_pred CCCCCEEEEEEeccccCchhhhhcChh-h--cCCcEEEEecCCC
Confidence 356799999999999999999999742 2 2346788888643
No 65
>TIGR01882 peptidase-T peptidase T. This model represents a tripeptide aminopeptidase known as Peptidase T, which has a substrate preference for hydrophobic peptides.
Probab=65.25 E-value=7.1 Score=43.89 Aligned_cols=38 Identities=24% Similarity=0.353 Sum_probs=31.0
Q ss_pred ChHHHHHHhcCCCCCCceEEEEecCccccCccchHHHHH
Q 005039 1 MLELARVMSQWAHEFKNAVIFLFNTGEEEGLNGAHSFVT 39 (717)
Q Consensus 1 mLElaR~l~~~~~~p~rtIiFlf~~aEE~GLlGS~~Fv~ 39 (717)
||+.+|+|.+.+..++.+|.|+|.-+||.| .|++.+..
T Consensus 150 ~l~A~~~L~e~~~~~~g~I~~~ft~dEE~g-~Ga~~l~~ 187 (410)
T TIGR01882 150 IMTAADYLINHPEIKHGTIRVAFTPDEEIG-RGAHKFDV 187 (410)
T ss_pred HHHHHHHHHhCCCCCCCCEEEEEECcccCC-cCcchhhh
Confidence 578899997643445779999999999998 59999874
No 66
>PRK13007 succinyl-diaminopimelate desuccinylase; Reviewed
Probab=64.97 E-value=8.8 Score=41.74 Aligned_cols=51 Identities=29% Similarity=0.340 Sum_probs=38.9
Q ss_pred ChHHHHHHhcCCCCCCceEEEEecCccccCc--cchHHHHHhCCCccceeEEEEecc
Q 005039 1 MLELARVMSQWAHEFKNAVIFLFNTGEEEGL--NGAHSFVTQHPWSTTIRVAVDLEA 55 (717)
Q Consensus 1 mLElaR~l~~~~~~p~rtIiFlf~~aEE~GL--lGS~~Fv~~hp~~~~i~a~INlD~ 55 (717)
||.+++++. +++++|.|+|.+.||.|- .|+..++.+++...+..++|+.|-
T Consensus 103 ~l~a~~~l~----~~~~~i~~~~~~~EE~~~~~~G~~~~~~~~~~~~~~d~~i~~ep 155 (352)
T PRK13007 103 MLHLAATLA----EPAHDLTLVFYDCEEVEAEANGLGRLAREHPEWLAGDFAILLEP 155 (352)
T ss_pred HHHHHHHhh----ccCCCeEEEEEecccccCCcccHHHHHHhcccccCCCEEEEecC
Confidence 466777773 367899999999999864 589999877765456778888875
No 67
>PRK15026 aminoacyl-histidine dipeptidase; Provisional
Probab=64.33 E-value=9.6 Score=44.16 Aligned_cols=39 Identities=18% Similarity=0.463 Sum_probs=32.9
Q ss_pred CCceEEEEecCccccCccchHHHHHhCCCccceeEEEEeccC
Q 005039 15 FKNAVIFLFNTGEEEGLNGAHSFVTQHPWSTTIRVAVDLEAM 56 (717)
Q Consensus 15 p~rtIiFlf~~aEE~GLlGS~~Fv~~hp~~~~i~a~INlD~~ 56 (717)
++.+|.++|+..||.|+.||+++.. .+ .+.+++||+|..
T Consensus 133 ~~~~i~~l~t~dEE~G~~ga~~l~~--~~-~~~~~~i~~e~~ 171 (485)
T PRK15026 133 VHGPLEVLLTMTEEAGMDGAFGLQS--NW-LQADILINTDSE 171 (485)
T ss_pred CCCCEEEEEEcccccCcHhHHHhhh--cc-CCcCEEEEeCCC
Confidence 4678999999999999999999963 22 467999999986
No 68
>PRK08554 peptidase; Reviewed
Probab=63.56 E-value=8.8 Score=43.73 Aligned_cols=54 Identities=19% Similarity=0.251 Sum_probs=39.6
Q ss_pred hHHHHHHhcCCCCCCceEEEEecCccccCccchHHHHHhCC-CccceeEEEEeccCC
Q 005039 2 LELARVMSQWAHEFKNAVIFLFNTGEEEGLNGAHSFVTQHP-WSTTIRVAVDLEAMG 57 (717)
Q Consensus 2 LElaR~l~~~~~~p~rtIiFlf~~aEE~GLlGS~~Fv~~hp-~~~~i~a~INlD~~G 57 (717)
|..++.|.+ .+++++|.|+|+..||.|-.|+..++++.. ......+.||.|..+
T Consensus 112 l~A~~~l~~--~~~~~~i~l~~~~dEE~g~~~~~~~~~~~~~~~~~~~~~iv~Ept~ 166 (438)
T PRK08554 112 MLALKELSK--EPLNGKVIFAFTGDEEIGGAMAMHIAEKLREEGKLPKYMINADGIG 166 (438)
T ss_pred HHHHHHHHh--cCCCCCEEEEEEcccccCccccHHHHHHHHhcCCCCCEEEEeCCCC
Confidence 566777765 346788999999999999877777765432 224567889999854
No 69
>PLN02280 IAA-amino acid hydrolase
Probab=63.17 E-value=9.9 Score=43.96 Aligned_cols=39 Identities=31% Similarity=0.594 Sum_probs=31.9
Q ss_pred ChHHHHHHhcCCCCCCceEEEEecCccccCccchHHHHHh
Q 005039 1 MLELARVMSQWAHEFKNAVIFLFNTGEEEGLNGAHSFVTQ 40 (717)
Q Consensus 1 mLElaR~l~~~~~~p~rtIiFlf~~aEE~GLlGS~~Fv~~ 40 (717)
||.++++|++.+.+++.+|+|+|..+||.|. |++..+++
T Consensus 194 ~l~a~~~L~~~~~~~~g~V~~if~pdEE~g~-Ga~~li~~ 232 (478)
T PLN02280 194 LLGAAKILKSREHLLKGTVVLLFQPAEEAGN-GAKRMIGD 232 (478)
T ss_pred HHHHHHHHHhccccCCceEEEEecccccccc-hHHHHHHC
Confidence 3567788876555678899999999999984 99999954
No 70
>PRK07522 acetylornithine deacetylase; Provisional
Probab=62.98 E-value=9.3 Score=42.14 Aligned_cols=53 Identities=17% Similarity=0.181 Sum_probs=37.9
Q ss_pred ChHHHHHHhcCCCCCCceEEEEecCccccCccchHHHHHhCCC-ccceeEEEEecc
Q 005039 1 MLELARVMSQWAHEFKNAVIFLFNTGEEEGLNGAHSFVTQHPW-STTIRVAVDLEA 55 (717)
Q Consensus 1 mLElaR~l~~~~~~p~rtIiFlf~~aEE~GLlGS~~Fv~~hp~-~~~i~a~INlD~ 55 (717)
||+++++|.+. +++++|.|+|..+||.|..|+++++++... ..+...+|..|-
T Consensus 112 ~l~a~~~l~~~--~~~~~i~~~~~~dEE~g~~G~~~l~~~~~~~~~~~d~~i~~ep 165 (385)
T PRK07522 112 ALAAVPELAAA--PLRRPLHLAFSYDEEVGCLGVPSMIARLPERGVKPAGCIVGEP 165 (385)
T ss_pred HHHHHHHHHhC--CCCCCEEEEEEeccccCCccHHHHHHHhhhcCCCCCEEEEccC
Confidence 46788888763 467899999999999999999999965332 112344554443
No 71
>PRK13381 peptidase T; Provisional
Probab=61.59 E-value=7.5 Score=43.47 Aligned_cols=39 Identities=21% Similarity=0.316 Sum_probs=32.2
Q ss_pred ChHHHHHHhcCCCCCCceEEEEecCccccCccchHHHHHh
Q 005039 1 MLELARVMSQWAHEFKNAVIFLFNTGEEEGLNGAHSFVTQ 40 (717)
Q Consensus 1 mLElaR~l~~~~~~p~rtIiFlf~~aEE~GLlGS~~Fv~~ 40 (717)
||+.+++|.+. ..++.+|.|+|..+||.|..|++.++.+
T Consensus 146 ~l~a~~~l~~~-~~~~g~i~~~~~~dEE~g~~G~~~~~~~ 184 (404)
T PRK13381 146 VMTLLENLTEN-EVEHGDIVVAFVPDEEIGLRGAKALDLA 184 (404)
T ss_pred HHHHHHHHHhc-CCCCCCEEEEEEcccccccccHHHHHHh
Confidence 46778888764 3457799999999999999999999854
No 72
>PRK00466 acetyl-lysine deacetylase; Validated
Probab=61.39 E-value=13 Score=40.68 Aligned_cols=50 Identities=18% Similarity=0.157 Sum_probs=36.5
Q ss_pred ChHHHHHHhcCCCCCCceEEEEecCccccCccchHHHHHhCCCccceeEEEEeccCC
Q 005039 1 MLELARVMSQWAHEFKNAVIFLFNTGEEEGLNGAHSFVTQHPWSTTIRVAVDLEAMG 57 (717)
Q Consensus 1 mLElaR~l~~~~~~p~rtIiFlf~~aEE~GLlGS~~Fv~~hp~~~~i~a~INlD~~G 57 (717)
||+.++++.+.+ .++.|+++.+||.|..|++++++++ . +.+++|..|-.+
T Consensus 100 ~l~a~~~l~~~~----~~i~~~~~~dEE~g~~G~~~l~~~~-~--~~d~~i~~ep~~ 149 (346)
T PRK00466 100 MIIAAWLLNEKG----IKVMVSGLADEESTSIGAKELVSKG-F--NFKHIIVGEPSN 149 (346)
T ss_pred HHHHHHHHHHcC----CCEEEEEEcCcccCCccHHHHHhcC-C--CCCEEEEcCCCC
Confidence 467778886533 3589999999999999999999764 2 345566666543
No 73
>TIGR01246 dapE_proteo succinyl-diaminopimelate desuccinylase, proteobacterial clade. This model describes a proteobacterial subset of succinyl-diaminopimelate desuccinylases. An experimentally confirmed Gram-positive lineage succinyl-diaminopimelate desuccinylase has been described for Corynebacterium glutamicum, and a neighbor-joining tree shows the seed members, SP:Q59284, and putative archaeal members such as TrEMBL:O58003 in a single clade. However, the archaeal members differ substantially, share a number of motifs with acetylornithine deacetylases rather than succinyl-diaminopimelate desuccinylases, and are not taken as trusted examples of succinyl-diaminopimelate desuccinylases. This model is limited to proteobacterial members for this reason.
Probab=59.80 E-value=8.4 Score=42.33 Aligned_cols=39 Identities=18% Similarity=0.331 Sum_probs=30.8
Q ss_pred ChHHHHHHhcCCCCCCceEEEEecCccccC-ccchHHHHH
Q 005039 1 MLELARVMSQWAHEFKNAVIFLFNTGEEEG-LNGAHSFVT 39 (717)
Q Consensus 1 mLElaR~l~~~~~~p~rtIiFlf~~aEE~G-LlGS~~Fv~ 39 (717)
||+.++.+.+.+.+++++|+|+|..+||.| ..|++.+++
T Consensus 104 ~l~a~~~l~~~~~~~~~~v~~~~~~dEE~~~~~G~~~~~~ 143 (370)
T TIGR01246 104 FIVAAERFVKKNPDHKGSISLLITSDEEGTAIDGTKKVVE 143 (370)
T ss_pred HHHHHHHHHHhcCCCCCcEEEEEEeccccCCCcCHHHHHH
Confidence 356667776656677889999999999986 479999875
No 74
>PRK06837 acetylornithine deacetylase; Provisional
Probab=54.84 E-value=17 Score=41.05 Aligned_cols=39 Identities=26% Similarity=0.078 Sum_probs=32.5
Q ss_pred ChHHHHHHhcCCCCCCceEEEEecCccccCccchHHHHH
Q 005039 1 MLELARVMSQWAHEFKNAVIFLFNTGEEEGLNGAHSFVT 39 (717)
Q Consensus 1 mLElaR~l~~~~~~p~rtIiFlf~~aEE~GLlGS~~Fv~ 39 (717)
||..++++.+.+.+++++|.|+|+..||.|-.|+...+.
T Consensus 146 ~l~a~~~l~~~~~~~~~~i~~~~~~dEE~~g~g~~~~~~ 184 (427)
T PRK06837 146 MLFALDALRAAGLAPAARVHFQSVIEEESTGNGALSTLQ 184 (427)
T ss_pred HHHHHHHHHHcCCCCCCcEEEEEEeccccCCHhHHHHHh
Confidence 467788888767778999999999999988889887764
No 75
>PRK06915 acetylornithine deacetylase; Validated
Probab=54.51 E-value=12 Score=41.90 Aligned_cols=40 Identities=25% Similarity=0.271 Sum_probs=33.4
Q ss_pred ChHHHHHHhcCCCCCCceEEEEecCccccCccchHHHHHh
Q 005039 1 MLELARVMSQWAHEFKNAVIFLFNTGEEEGLNGAHSFVTQ 40 (717)
Q Consensus 1 mLElaR~l~~~~~~p~rtIiFlf~~aEE~GLlGS~~Fv~~ 40 (717)
||..+++|++.+.+++.+|.|++..+||.|-.|+...+.+
T Consensus 142 ~l~a~~~l~~~~~~~~~~v~~~~~~dEE~g~~G~~~~~~~ 181 (422)
T PRK06915 142 LLLAMEALIESGIELKGDVIFQSVIEEESGGAGTLAAILR 181 (422)
T ss_pred HHHHHHHHHHcCCCCCCcEEEEEecccccCCcchHHHHhc
Confidence 4677888887666778899999999999998899887744
No 76
>TIGR01902 dapE-lys-deAc N-acetyl-ornithine/N-acetyl-lysine deacetylase. This clade of mainly archaeal and related bacterial species contains two characterized enzymes, an deacetylase with specificity for both N-acetyl-ornithine and N-acetyl-lysine from Thermus which is found within a lysine biosynthesis operon, and a fusion protein with acetyl-glutamate kinase (an enzyme of ornithine biosynthesis) from Lactobacillus. It is possible that all of the sequences within this clade have dual specificity, or that a mix of specificities have evolved within this clade.
Probab=52.63 E-value=21 Score=38.71 Aligned_cols=49 Identities=18% Similarity=0.122 Sum_probs=36.2
Q ss_pred ChHHHHHHhcCCCCCCceEEEEecCccccCccchHHHHHhCCCccceeEEEEeccCC
Q 005039 1 MLELARVMSQWAHEFKNAVIFLFNTGEEEGLNGAHSFVTQHPWSTTIRVAVDLEAMG 57 (717)
Q Consensus 1 mLElaR~l~~~~~~p~rtIiFlf~~aEE~GLlGS~~Fv~~hp~~~~i~a~INlD~~G 57 (717)
||+.++.|.+. ..+|+|++...||.|..|++.+++++. + .++|..|..+
T Consensus 90 ~l~a~~~l~~~----~~~i~~~~~~dEE~g~~G~~~~~~~~~--~--~~~ii~ept~ 138 (336)
T TIGR01902 90 MIFATWLLNEK----GIKVIVSGLVDEESSSKGAREVIDKNY--P--FYVIVGEPSG 138 (336)
T ss_pred HHHHHHHHHhC----CCcEEEEEEeCcccCCccHHHHHhhcC--C--CEEEEecCCC
Confidence 46677777642 358999999999999999999997653 1 2556667544
No 77
>PRK13004 peptidase; Reviewed
Probab=52.10 E-value=22 Score=39.59 Aligned_cols=40 Identities=10% Similarity=0.052 Sum_probs=32.3
Q ss_pred ChHHHHHHhcCCCCCCceEEEEecCcccc-CccchHHHHHh
Q 005039 1 MLELARVMSQWAHEFKNAVIFLFNTGEEE-GLNGAHSFVTQ 40 (717)
Q Consensus 1 mLElaR~l~~~~~~p~rtIiFlf~~aEE~-GLlGS~~Fv~~ 40 (717)
||..+|.|.+.+.+++++|+|+|..+||. |-.|++.++++
T Consensus 118 ~l~a~~~l~~~~~~~~~~i~~~~~~~EE~~~g~~~~~~~~~ 158 (399)
T PRK13004 118 MVYAAKIIKDLGLDDEYTLYVTGTVQEEDCDGLCWRYIIEE 158 (399)
T ss_pred HHHHHHHHHhcCCCCCCeEEEEEEcccccCcchhHHHHHHh
Confidence 47788999876667889999999999996 34678888754
No 78
>PF10190 Tmemb_170: Putative transmembrane protein 170; InterPro: IPR019334 This entry represents a group of putative transmembrane proteins conserved from nematodes to humans. The protein is only approximately 130 amino acids in length. The function is unknown.
Probab=49.77 E-value=1.5e+02 Score=27.36 Aligned_cols=49 Identities=10% Similarity=-0.019 Sum_probs=34.7
Q ss_pred HHhhccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCCCceee
Q 005039 215 ASLVMGGYPAAVSLALTCLSAILMLVLSISFSVVIAFILPQISSSPVPYV 264 (717)
Q Consensus 215 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vA~~~~~~~~~~~sw~ 264 (717)
..+++.+.....++.....+.+.....+...+.++|.++.+. +..|+++
T Consensus 32 ~~lRkhk~~~f~pi~~l~mg~l~p~~~G~itSa~IA~vY~a~-~~~M~~~ 80 (105)
T PF10190_consen 32 FTLRKHKFGRFIPIVILLMGVLGPLTGGSITSAAIAGVYRAA-GFRMSTW 80 (105)
T ss_pred HHHhhccchhhhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHc-CCcccHH
Confidence 344444444455666666677777888888999999999865 6788875
No 79
>PTZ00371 aspartyl aminopeptidase; Provisional
Probab=46.00 E-value=1.4e+02 Score=34.67 Aligned_cols=121 Identities=12% Similarity=0.100 Sum_probs=71.0
Q ss_pred CCceEEEEecCccccCccchHHHHHhCCCccc----------ee---------------EEEEeccCCC-----------
Q 005039 15 FKNAVIFLFNTGEEEGLNGAHSFVTQHPWSTT----------IR---------------VAVDLEAMGI----------- 58 (717)
Q Consensus 15 p~rtIiFlf~~aEE~GLlGS~~Fv~~hp~~~~----------i~---------------a~INlD~~G~----------- 58 (717)
+....++++++=||.|..|+++-. .+..++ .. .+|-.|++-+
T Consensus 274 ~~~~~v~~~~d~EEVGs~ga~GA~--s~~l~d~l~ri~~~~~~~~~~~~~~~~~~~~~S~~IS~DvahA~hPn~~~~~d~ 351 (465)
T PTZ00371 274 SSNIRMVCLFDHEEVGSSSSQGAG--SSLLPDTIERILSSLSASNNSSDDSFAKLMARSFLLSVDMAHAVHPNYPEKHQA 351 (465)
T ss_pred CCceEEEEEECCcCCCCCcchhcc--ccccHHHHHHHHHhhccccccchhHHHHHHhccEEEEEecccccCCCCccccCC
Confidence 455666667999999999988754 222111 01 6777787533
Q ss_pred -------CCcceEEEe----CCChHHHHHHHHhc---CCCCCccccccccccCCCCCCCChHhhhh-cCCCcEEEEeeeC
Q 005039 59 -------GGRSALFQA----GPNLWAVENFAAVA---KYPSGQIIGQDLFASGVFETATDFQVYTE-VAGLSGLDFAYTD 123 (717)
Q Consensus 59 -------gG~~~lf~~----g~~~~L~~~y~~~a---~~P~~~~~~~~~f~~g~ipsdTD~~~F~~-~~GIPgLd~a~~~ 123 (717)
+|..+.+.+ .+++.+.....+.+ .-|+ |.....+..|++||-.++.. ..|||.+|+..
T Consensus 352 ~~~~~lg~GpvIk~~a~~~y~td~~~~a~i~~la~~~~Ip~-----Q~~~~~~d~~~GsTig~i~~s~~Gi~tvDiGi-- 424 (465)
T PTZ00371 352 NHRPKFHEGIVIKYNANQRYATNGVTASLLKAIAKKANIPI-----QEFVVKNDSPCGSTIGPILSSNLGIRTVDIGI-- 424 (465)
T ss_pred cCceeCCCCcEEEEeCCCCcccCHHHHHHHHHHHHHcCCCE-----EEEEecCCCCCcchHHHHHHhCCCCcEEEech--
Confidence 244443431 13565555554433 2332 32222234677888888764 58999999843
Q ss_pred CCCCCCCCCCCcCCCCHhHHH
Q 005039 124 KSAVYHTKNDRLDLLKPGSLQ 144 (717)
Q Consensus 124 ~~~~YHT~~Dt~d~i~~~slq 144 (717)
+--.-|++..+...-|.+.+-
T Consensus 425 P~l~MHS~rE~~~~~D~~~~~ 445 (465)
T PTZ00371 425 PQLAMHSIREMCGVVDIYYLV 445 (465)
T ss_pred hhcccccHHHHccHHHHHHHH
Confidence 234569999877765554443
No 80
>PRK02813 putative aminopeptidase 2; Provisional
Probab=45.75 E-value=71 Score=36.56 Aligned_cols=119 Identities=13% Similarity=0.125 Sum_probs=66.0
Q ss_pred CceEEEEecCccccCcc---chHH-----------HHHhCC-----CccceeEEEEeccCCC------------------
Q 005039 16 KNAVIFLFNTGEEEGLN---GAHS-----------FVTQHP-----WSTTIRVAVDLEAMGI------------------ 58 (717)
Q Consensus 16 ~rtIiFlf~~aEE~GLl---GS~~-----------Fv~~hp-----~~~~i~a~INlD~~G~------------------ 58 (717)
+.++++++++-||.|.. ||+. -..... -.-+-..+|-+|++-+
T Consensus 252 ~~~~~~~~~d~EEVGs~~~~GA~s~~l~~~l~ri~~~~~~~~~~~~~~i~~s~~IS~DvahA~hPn~~~~~~~~~~~~lg 331 (428)
T PRK02813 252 DATNVLAAFDHEEVGSATKQGADSPFLEDVLERIVLALGGDREDFLRALARSFLISADMAHAVHPNYPEKHDPTHRPLLN 331 (428)
T ss_pred CCeEEEEEEecCccCCCCCcccCchhHHHHHHHHHHhhcCchHHHHHhhCCCeEEEEeccCCCCCCCCCccCcccCccCC
Confidence 68999999999999999 8774 110000 0112234455554422
Q ss_pred CCcceEEEe--C--CChHHHHHHHHh---cCCCCCccccccccccCCCCCCCChHhhhh-cCCCcEEEEeeeCCCCCCCC
Q 005039 59 GGRSALFQA--G--PNLWAVENFAAV---AKYPSGQIIGQDLFASGVFETATDFQVYTE-VAGLSGLDFAYTDKSAVYHT 130 (717)
Q Consensus 59 gG~~~lf~~--g--~~~~L~~~y~~~---a~~P~~~~~~~~~f~~g~ipsdTD~~~F~~-~~GIPgLd~a~~~~~~~YHT 130 (717)
+|..+.+.+ + +++.....+.+. +.-|+ |.....+..|++||-.++.. ..|+|.+|+.. +--.-|+
T Consensus 332 ~GpvIk~~~~~~y~t~~~~~a~~~~ia~~~~Ip~-----Q~~v~~~d~~gGstig~i~~s~~Gi~tvdiGi--P~l~MHS 404 (428)
T PRK02813 332 KGPVIKINANQRYATDAESAAVFKLLCEKAGVPY-----QEFVNRSDMPCGSTIGPITAARLGIRTVDVGA--PMLAMHS 404 (428)
T ss_pred cCCeEEECCCCCcccCHHHHHHHHHHHHHcCCCE-----EEEEecCCCCCccHHHHHHHhCCCCcEEEeCh--hhccccc
Confidence 233333321 1 244444444332 33342 22222334577889888764 58999999843 2245699
Q ss_pred CCCCcCCCCHh
Q 005039 131 KNDRLDLLKPG 141 (717)
Q Consensus 131 ~~Dt~d~i~~~ 141 (717)
+..+...-|.+
T Consensus 405 ~~E~~~~~D~~ 415 (428)
T PRK02813 405 ARELAGVKDHA 415 (428)
T ss_pred HHHHccHHHHH
Confidence 98777754443
No 81
>PRK08651 succinyl-diaminopimelate desuccinylase; Reviewed
Probab=44.43 E-value=40 Score=37.32 Aligned_cols=56 Identities=11% Similarity=0.206 Sum_probs=44.1
Q ss_pred CCCCChHhhhhcCCCcEEEEeeeCCCCCCCCCCCCcCCCCHhHHHHHHHHHHHHHHHHhcC
Q 005039 100 ETATDFQVYTEVAGLSGLDFAYTDKSAVYHTKNDRLDLLKPGSLQHLGENMLDFLLQTASS 160 (717)
Q Consensus 100 psdTD~~~F~~~~GIPgLd~a~~~~~~~YHT~~Dt~d~i~~~slq~~g~~~l~lv~~la~~ 160 (717)
++.||.+.|.+ .|+|.+.+.- ++...-|++. |+++.+.+....+.+..++..+++.
T Consensus 338 ~g~tD~~~~~~-~gip~v~~Gp-g~~~~~H~~~---E~i~~~~l~~~~~i~~~~i~~l~~~ 393 (394)
T PRK08651 338 LGGTDARFFGA-KGIPTVVYGP-GELELAHAPD---EYVEVKDVEKAAKVYEEVLKRLAKG 393 (394)
T ss_pred cCcccHHHHhh-CCCcEEEECC-CChHhcCCCC---ceeEHHHHHHHHHHHHHHHHHhhcC
Confidence 56799999988 8999986532 2223578876 7888999999999999999998863
No 82
>COG0624 ArgE Acetylornithine deacetylase/Succinyl-diaminopimelate desuccinylase and related deacylases [Amino acid transport and metabolism]
Probab=41.80 E-value=34 Score=38.22 Aligned_cols=55 Identities=18% Similarity=0.198 Sum_probs=43.8
Q ss_pred ChHHHHHHhcCCCCCCceEEEEecCccccCccchHHHHHhCCC--ccceeEEEEecc
Q 005039 1 MLELARVMSQWAHEFKNAVIFLFNTGEEEGLNGAHSFVTQHPW--STTIRVAVDLEA 55 (717)
Q Consensus 1 mLElaR~l~~~~~~p~rtIiFlf~~aEE~GLlGS~~Fv~~hp~--~~~i~a~INlD~ 55 (717)
++..++.+.+.+..++++|.+++.+.||.|-.|...|..++.. ..+..+.|..|-
T Consensus 124 ~l~A~~~l~~~~~~~~~~v~~~~~~dEE~g~~~~~~~~~~~~~~~~~~~d~~i~~E~ 180 (409)
T COG0624 124 ALYALSALKAAGGELPGDVRLLFTADEESGGAGGKAYLEEGEEALGIRPDYEIVGEP 180 (409)
T ss_pred HHHHHHHHHHhCCCCCeEEEEEEEeccccCCcchHHHHHhcchhhccCCCEEEeCCC
Confidence 3567777776667788999999999999999999999977652 345677777776
No 83
>PRK08596 acetylornithine deacetylase; Validated
Probab=38.61 E-value=53 Score=36.99 Aligned_cols=56 Identities=16% Similarity=0.203 Sum_probs=45.3
Q ss_pred CCCCChHhhhhcCCCcEEEEeeeCCCCCCCCCCCCcCCCCHhHHHHHHHHHHHHHHHHhcC
Q 005039 100 ETATDFQVYTEVAGLSGLDFAYTDKSAVYHTKNDRLDLLKPGSLQHLGENMLDFLLQTASS 160 (717)
Q Consensus 100 psdTD~~~F~~~~GIPgLd~a~~~~~~~YHT~~Dt~d~i~~~slq~~g~~~l~lv~~la~~ 160 (717)
++.||...|++ .|+|++.+.. +.....|++. |+++.+.+.+..+.+..++..+...
T Consensus 363 ~g~tD~~~~~~-~gip~v~~Gp-g~~~~~H~~~---E~v~i~~~~~~~~~~~~~l~~~~~~ 418 (421)
T PRK08596 363 TTVTDGGWFAE-FGIPAVIYGP-GTLEEAHSVN---EKVEIEQLIEYTKVITAFIYEWCHT 418 (421)
T ss_pred eeecchhhhhh-cCCCEEEECC-CcccccCCCC---ceEEHHHHHHHHHHHHHHHHHHhCC
Confidence 56789999988 8999987654 2235679976 8899999999999999999888754
No 84
>PRK02256 putative aminopeptidase 1; Provisional
Probab=33.26 E-value=1.3e+02 Score=34.92 Aligned_cols=120 Identities=12% Similarity=-0.021 Sum_probs=66.5
Q ss_pred CCCceEEEEecCccccCccchHHHHH-------------hCCCcc--------ceeEEEEeccCCC--------------
Q 005039 14 EFKNAVIFLFNTGEEEGLNGAHSFVT-------------QHPWST--------TIRVAVDLEAMGI-------------- 58 (717)
Q Consensus 14 ~p~rtIiFlf~~aEE~GLlGS~~Fv~-------------~hp~~~--------~i~a~INlD~~G~-------------- 58 (717)
.++..+++++++-||.|+.|+++=.. -.|-.. .-..+|-+|++=+
T Consensus 277 ~~~~~~~~~~~dqEEVGs~ga~gA~s~~l~~~l~Ri~~~~~pd~~~~~~~~~~~~S~~IS~Dvaha~hPn~~~~~~~~~~ 356 (462)
T PRK02256 277 NPEKTAVVLLVDKEEIGSEGNTGAQSRFFENFVAELLAKTEGNYSDLKLRRALANSKALSADVSAAFDPNYPSVHEKQNA 356 (462)
T ss_pred cCCCeEEEEEEcccccCCcchhhhcchhHHHHHHHHHHhcCCCcchHHHHHHHhccEEEEEeCCCCCCCCCCcccCcccC
Confidence 45679999999999999998877541 112000 0125666665522
Q ss_pred ----CCcceEEEe-------CC--ChHHHHHHHHh---cCCCCCccccccc-c-ccCCCCCCCChHhhhhcCCCcEEEEe
Q 005039 59 ----GGRSALFQA-------GP--NLWAVENFAAV---AKYPSGQIIGQDL-F-ASGVFETATDFQVYTEVAGLSGLDFA 120 (717)
Q Consensus 59 ----gG~~~lf~~-------g~--~~~L~~~y~~~---a~~P~~~~~~~~~-f-~~g~ipsdTD~~~F~~~~GIPgLd~a 120 (717)
+|..+.... +. ++.+.....+. +.-|+ |.. . +.+...++||-.... ..|||.+|+.
T Consensus 357 ~~Lg~GpvIk~~d~~~~~y~t~~~~~~~~~~i~~iA~~~~Ip~-----Q~~~~~r~d~~~GgTig~~~s-~~Gi~tvdiG 430 (462)
T PRK02256 357 AYLGYGVVFTKYTGSRGKYGANDANAEFVAEVRNLFNKNNVVW-----QTAELGKVDQGGGGTIAKFLA-NYGMEVIDCG 430 (462)
T ss_pred ccCCCCcEEEEEcCCCCcccccCCCHHHHHHHHHHHHHcCCCE-----EEEEeecCCCCCcChHHHHHc-CCCCcEEEec
Confidence 233342221 21 55555444433 33343 331 2 222224588954455 4899999984
Q ss_pred eeCCCCCCCCCCCCcCCCCHh
Q 005039 121 YTDKSAVYHTKNDRLDLLKPG 141 (717)
Q Consensus 121 ~~~~~~~YHT~~Dt~d~i~~~ 141 (717)
. +--.-||+......-|.+
T Consensus 431 i--P~l~MHS~rE~~~~~D~~ 449 (462)
T PRK02256 431 V--ALLSMHSPFEIASKADIY 449 (462)
T ss_pred h--hhhccccHHHHhhHHHHH
Confidence 3 224569998776654443
No 85
>COG1473 AbgB Metal-dependent amidase/aminoacylase/carboxypeptidase [General function prediction only]
Probab=31.66 E-value=57 Score=36.92 Aligned_cols=52 Identities=19% Similarity=0.320 Sum_probs=40.4
Q ss_pred hHHHHHHhcCCCCCCceEEEEecCccccCccchHHHHHhCCCccc-eeEEEEecc
Q 005039 2 LELARVMSQWAHEFKNAVIFLFNTGEEEGLNGAHSFVTQHPWSTT-IRVAVDLEA 55 (717)
Q Consensus 2 LElaR~l~~~~~~p~rtIiFlf~~aEE~GLlGS~~Fv~~hp~~~~-i~a~INlD~ 55 (717)
|-.|++|++....++-+|+|+|--|||.+- |+..-++ ....++ +.+++-+-.
T Consensus 112 LgaA~~L~~~~~~~~Gtv~~ifQPAEE~~~-Ga~~mi~-~G~~~~~vD~v~g~H~ 164 (392)
T COG1473 112 LGAALALAEHKDNLPGTVRLIFQPAEEGGG-GAKAMIE-DGVFDDFVDAVFGLHP 164 (392)
T ss_pred HHHHHHHHhhhhhCCcEEEEEecccccccc-cHHHHHh-cCCccccccEEEEecC
Confidence 567899987657899999999999999988 9888884 443444 776665544
No 86
>KOG2292 consensus Oligosaccharyltransferase, STT3 subunit [Posttranslational modification, protein turnover, chaperones]
Probab=29.66 E-value=4.8e+02 Score=30.93 Aligned_cols=30 Identities=27% Similarity=0.610 Sum_probs=19.5
Q ss_pred HHhHHHHHHHHHHHhhhcccc--hHHHHHHHH
Q 005039 326 KSGFLQWLILLALGNYYKIGS--TYMALVWLV 355 (717)
Q Consensus 326 ~~~~~~~~~l~~~~t~~~i~S--~y~~~~~~~ 355 (717)
+.+.++|+.++.+.-++-+.+ +|.+.+-++
T Consensus 191 kTGSifwa~~~aL~YFYMVsaWGGYvFiiNLI 222 (751)
T KOG2292|consen 191 KTGSIFWAACCALAYFYMVSAWGGYVFIINLI 222 (751)
T ss_pred hcchHHHHHHHHHHHHhheeeccceEEEEech
Confidence 446788998887776665554 666554444
No 87
>PRK07338 hypothetical protein; Provisional
Probab=29.21 E-value=86 Score=34.87 Aligned_cols=56 Identities=18% Similarity=0.191 Sum_probs=43.8
Q ss_pred CCCCCChHhhhhcCCCcEEE-EeeeCCCCCCCCCCCCcCCCCHhHHHHHHHHHHHHHHHHhcC
Q 005039 99 FETATDFQVYTEVAGLSGLD-FAYTDKSAVYHTKNDRLDLLKPGSLQHLGENMLDFLLQTASS 160 (717)
Q Consensus 99 ipsdTD~~~F~~~~GIPgLd-~a~~~~~~~YHT~~Dt~d~i~~~slq~~g~~~l~lv~~la~~ 160 (717)
.+..||-..|.. .|+|.++ +.. .+...|++. |+++.+.+....+.+..++..++..
T Consensus 344 ~~g~tDa~~~~~-~giP~v~~~Gp--g~~~~H~~~---E~v~i~~l~~~~~~~~~~l~~~~~~ 400 (402)
T PRK07338 344 SGGVCDGNNLAA-AGLPVVDTLGV--RGGNIHSED---EFVILDSLVERAQLSALILMRLAQG 400 (402)
T ss_pred CCccchHHHHhh-cCCCeEeccCC--CCCCCCCcc---ceEehhhHHHHHHHHHHHHHHHhcC
Confidence 356799999987 7999997 332 234569977 8889999999999999999888653
No 88
>PRK06133 glutamate carboxypeptidase; Reviewed
Probab=28.04 E-value=78 Score=35.52 Aligned_cols=58 Identities=9% Similarity=0.042 Sum_probs=45.0
Q ss_pred CCCCCChHhhhhcCCCcEEEEeeeCCCCCCCCCCCCcCCCCHhHHHHHHHHHHHHHHHHhcC
Q 005039 99 FETATDFQVYTEVAGLSGLDFAYTDKSAVYHTKNDRLDLLKPGSLQHLGENMLDFLLQTASS 160 (717)
Q Consensus 99 ipsdTD~~~F~~~~GIPgLd~a~~~~~~~YHT~~Dt~d~i~~~slq~~g~~~l~lv~~la~~ 160 (717)
.++.||...|++ .|+|.+-+.+...+..-|++. |+++.+++....+.+..++..+++.
T Consensus 352 ~~g~tDa~~~~~-~gip~v~~g~G~~~~~aH~~n---E~i~i~~~~~~~~~~~~~~~~~~~~ 409 (410)
T PRK06133 352 TGGGTDAAFAAG-SGKAAVLEGFGLVGFGAHSND---EYIELNSIVPRLYLLTRMIMELSRD 409 (410)
T ss_pred CCCCchHHHHHh-cCCCceEecccCCCCCCCCCC---cEEEcccHHHHHHHHHHHHHHhhcC
Confidence 356799999988 799887644433335578887 8888999999999999999988763
No 89
>PF12911 OppC_N: N-terminal TM domain of oligopeptide transport permease C
Probab=27.77 E-value=69 Score=25.29 Aligned_cols=36 Identities=14% Similarity=0.163 Sum_probs=21.3
Q ss_pred HHHhhCCchhHHHHHHHHHHHHHHHHhcCCCCCCCc
Q 005039 445 YVHLSGAKGPIAFASFILVGLSIIMVSSGIIPPFSE 480 (717)
Q Consensus 445 li~l~~~~~~i~~~L~~v~~i~~~~~~~~~~fPf~~ 480 (717)
...+++|.|.-+.++.++.++.++.+..+...||++
T Consensus 8 ~~~~f~~nk~a~~gl~il~~~vl~ai~~p~~~p~~~ 43 (56)
T PF12911_consen 8 AWRRFRRNKLAVIGLIILLILVLLAIFAPFISPYDP 43 (56)
T ss_pred HHHHHHhCchHHHHHHHHHHHHHHHHHHHHcCCCCc
Confidence 346677766666666555444444445566668853
No 90
>PRK13381 peptidase T; Provisional
Probab=26.98 E-value=87 Score=34.95 Aligned_cols=54 Identities=19% Similarity=0.207 Sum_probs=42.4
Q ss_pred CCCCCChHhhhhcCCCcEEEEeeeCCCCCCCCCCCCcCCCCHhHHHHHHHHHHHHHHHHh
Q 005039 99 FETATDFQVYTEVAGLSGLDFAYTDKSAVYHTKNDRLDLLKPGSLQHLGENMLDFLLQTA 158 (717)
Q Consensus 99 ipsdTD~~~F~~~~GIPgLd~a~~~~~~~YHT~~Dt~d~i~~~slq~~g~~~l~lv~~la 158 (717)
.++.||...|.+ .|+|.+.+.. ++ ..-|++. |+++.+.+.+..+.+..++..+|
T Consensus 350 ~~g~tDa~~~~~-~giP~v~~Gp-G~-~~aH~~d---E~v~i~~l~~~~~v~~~~~~~~~ 403 (404)
T PRK13381 350 MRGGTDGAALSA-KGLPTPNLFT-GA-HNFHSRF---EFLPVSSFVKSYEVTITICLLAA 403 (404)
T ss_pred CCccchHHHHhc-CCCCeEEECc-cc-cCCcCcc---eeEEHHHHHHHHHHHHHHHHHhc
Confidence 356899999987 7999998753 33 3368865 67889999999999998888876
No 91
>TIGR03526 selenium_YgeY putative selenium metabolism hydrolase. SelD, selenophosphate synthase, is the selenium donor protein for both selenocysteine and selenouridine biosynthesis systems, but it occurs also in a few prokaryotes that have neither of those pathways. The method of partial phylogenetic profiling, starting from such orphan-selD genomes, identifies this protein as one of those most strongly correlated to SelD occurrence. Its distribution is also well correlated with that of family TIGR03309, a putative accessory protein of labile selenium (non-selenocysteine) enzyme maturation. This family includes the uncharacterized YgeY of Escherichia coli, and belongs to a larger family of metalloenzymes in which some are known peptidases, others enzymes of different types.
Probab=26.47 E-value=94 Score=34.58 Aligned_cols=41 Identities=7% Similarity=0.022 Sum_probs=29.5
Q ss_pred ChHHHHHHhcCCCCCCceEEEEecCcccc-CccchHHHHHhC
Q 005039 1 MLELARVMSQWAHEFKNAVIFLFNTGEEE-GLNGAHSFVTQH 41 (717)
Q Consensus 1 mLElaR~l~~~~~~p~rtIiFlf~~aEE~-GLlGS~~Fv~~h 41 (717)
||..++.|.+.+..++.++.|.+...||. +-.|++.++++.
T Consensus 116 ~l~a~~~l~~~~~~~~~~v~~~~~~dEE~~~g~~~~~~~~~~ 157 (395)
T TIGR03526 116 MVYAGKIIKDLGLLDDYTLLVTGTVQEEDCDGLCWQYIIEED 157 (395)
T ss_pred HHHHHHHHHHcCCCCCceEEEEEecccccCCcHhHHHHHhcc
Confidence 46677888766656778999999999993 334677777543
No 92
>PRK07079 hypothetical protein; Provisional
Probab=26.15 E-value=1.8e+02 Score=33.31 Aligned_cols=57 Identities=14% Similarity=0.139 Sum_probs=42.6
Q ss_pred CCChHhhhhcCCCcEEEEeeeCCCCCCCCCCCCcCCCCHhHHHHHHHHHHHHHHHHhcCC
Q 005039 102 ATDFQVYTEVAGLSGLDFAYTDKSAVYHTKNDRLDLLKPGSLQHLGENMLDFLLQTASST 161 (717)
Q Consensus 102 dTD~~~F~~~~GIPgLd~a~~~~~~~YHT~~Dt~d~i~~~slq~~g~~~l~lv~~la~~~ 161 (717)
.+|-+.|.+..|+|.+.+.....+...|++. |+++.+.+....+.+..++..+++..
T Consensus 402 ~~d~~~~~~~~giP~v~~g~~~~~~~~H~~d---E~v~l~~l~~~~~~~~~~~~~~~~~~ 458 (469)
T PRK07079 402 SLPNDVFADILGLPTLWVPHSYPACSQHAPN---EHLLASVAREGLQIMAGLFWDLGEQG 458 (469)
T ss_pred chhHHHHHHHhCCCEEEecCCCCCccCcCCC---CCCCHHHHHHHHHHHHHHHHHHhccC
Confidence 3577778765799998543222233468876 67889999999999999999998753
No 93
>PF05421 DUF751: Protein of unknown function (DUF751); InterPro: IPR008470 This family, Ycf33, contains several plant, cyanobacterial and algal chlorplast encoded proteins of unknown function. The family is exclusively found in phototrophic organisms and may therefore play a role in photosynthesis.
Probab=25.11 E-value=2.7e+02 Score=23.21 Aligned_cols=28 Identities=14% Similarity=-0.035 Sum_probs=19.5
Q ss_pred HHHHHHHHHHHHHHHHhhCCchhHHHHH
Q 005039 432 AVVSCLTLVYLLSYVHLSGAKGPIAFAS 459 (717)
Q Consensus 432 al~t~l~~~fliPli~l~~~~~~i~~~L 459 (717)
+.+..+....+-|+..++|+|..-+...
T Consensus 14 s~~lG~~~~~~~pl~~llk~p~tai~~i 41 (61)
T PF05421_consen 14 SVMLGLFLIIFEPLKPLLKNPVTAIALI 41 (61)
T ss_pred HHHHHHHHHHHHHHHHHhcCchHHHHHH
Confidence 3344455678899999999987655443
No 94
>PRK05469 peptidase T; Provisional
Probab=24.37 E-value=1.7e+02 Score=32.66 Aligned_cols=55 Identities=18% Similarity=0.156 Sum_probs=42.1
Q ss_pred CCCCCChHhhhhcCCCcEEEEeeeCCCCCCCCCCCCcCCCCHhHHHHHHHHHHHHHHHHhc
Q 005039 99 FETATDFQVYTEVAGLSGLDFAYTDKSAVYHTKNDRLDLLKPGSLQHLGENMLDFLLQTAS 159 (717)
Q Consensus 99 ipsdTD~~~F~~~~GIPgLd~a~~~~~~~YHT~~Dt~d~i~~~slq~~g~~~l~lv~~la~ 159 (717)
.+..||+..|.. .|+|.+.+.- ++ ...||+. ++++.+.+....+.+..++..++.
T Consensus 352 ~~ggtD~~~~~~-~giP~v~~gp-G~-~~~H~~~---E~v~i~~l~~~~~~~~~~~~~~~~ 406 (408)
T PRK05469 352 IRGGTDGSQLSF-MGLPCPNIFT-GG-HNFHGKF---EFVSLESMEKAVEVIVEIAELTAE 406 (408)
T ss_pred CCCcccHHHHhh-CCCceEEECc-Cc-ccCcCcc---eeeEHHHHHHHHHHHHHHHHHHhc
Confidence 357899999987 7999986542 22 3578875 567888999988888888887764
No 95
>PRK08652 acetylornithine deacetylase; Provisional
Probab=23.88 E-value=1.3e+02 Score=32.38 Aligned_cols=55 Identities=13% Similarity=0.071 Sum_probs=42.4
Q ss_pred CCCCCChHhhhhcCCCcEEEEeeeCCCCCCCCCCCCcCCCCHhHHHHHHHHHHHHHHHHh
Q 005039 99 FETATDFQVYTEVAGLSGLDFAYTDKSAVYHTKNDRLDLLKPGSLQHLGENMLDFLLQTA 158 (717)
Q Consensus 99 ipsdTD~~~F~~~~GIPgLd~a~~~~~~~YHT~~Dt~d~i~~~slq~~g~~~l~lv~~la 158 (717)
.++.||-+.|.+ .|+|.+.+.- ++....|++. |+++.+.+.+..+.+..++..+.
T Consensus 291 ~~g~tDa~~~~~-~gip~v~~Gp-g~~~~~H~~n---E~i~i~~l~~~~~~l~~~~~~~~ 345 (347)
T PRK08652 291 MRSWTDAINFRY-NGTKTVVWGP-GELDLCHTKF---ERIDVREVEKAKEFLKALNEILL 345 (347)
T ss_pred CCccchhHHHHH-CCCCEEEECC-CchhhcCCCC---ceeeHHHHHHHHHHHHHHHHHHh
Confidence 467899999988 8999986643 2224679985 67889999998888888887664
No 96
>TIGR01880 Ac-peptdase-euk N-acyl-L-amino-acid amidohydrolase. This model represents a family of eukaryotic N-acyl-L-amino-acid amidohydrolases active on fatty acid and acetyl amides of L-amino acids.
Probab=23.61 E-value=1.4e+02 Score=33.25 Aligned_cols=56 Identities=21% Similarity=0.268 Sum_probs=43.1
Q ss_pred CCCCChHhhhhcCCCcEEEEeeeCC-CCCCCCCCCCcCCCCHhHHHHHHHHHHHHHHHHhc
Q 005039 100 ETATDFQVYTEVAGLSGLDFAYTDK-SAVYHTKNDRLDLLKPGSLQHLGENMLDFLLQTAS 159 (717)
Q Consensus 100 psdTD~~~F~~~~GIPgLd~a~~~~-~~~YHT~~Dt~d~i~~~slq~~g~~~l~lv~~la~ 159 (717)
++.||...|++ .|+|.+-+.-..+ ....|++.. +++.+.+.+..+.+..++.+++.
T Consensus 343 ~g~tDa~~~~~-~gip~v~fgp~~~~~~~aH~~dE---~i~i~~l~~~~~~~~~~l~~~~~ 399 (400)
T TIGR01880 343 PGSTDSRYIRA-AGVPALGFSPMNNTPVLLHDHNE---FLNEAVFLRGIEIYQTLISALAS 399 (400)
T ss_pred cCcchHHHHHh-CCCCeEEECCccCCcccccCCCC---ceEHHHHHHHHHHHHHHHHHhhc
Confidence 56799999988 8999976543222 235899774 68899999999999999888863
No 97
>PRK13009 succinyl-diaminopimelate desuccinylase; Reviewed
Probab=22.93 E-value=1.5e+02 Score=32.50 Aligned_cols=53 Identities=17% Similarity=0.213 Sum_probs=41.4
Q ss_pred CCCCChHhhhhcCCCcEEEEeeeCCCCCCCCCCCCcCCCCHhHHHHHHHHHHHHHHHHh
Q 005039 100 ETATDFQVYTEVAGLSGLDFAYTDKSAVYHTKNDRLDLLKPGSLQHLGENMLDFLLQTA 158 (717)
Q Consensus 100 psdTD~~~F~~~~GIPgLd~a~~~~~~~YHT~~Dt~d~i~~~slq~~g~~~l~lv~~la 158 (717)
++.||-+.|.+ .|+|.+.+.-. ....|++. |+++.+.+....+.+..++..+.
T Consensus 322 ~g~tda~~~~~-~g~p~v~~Gp~--~~~~H~~~---E~i~~~~l~~~~~~~~~~~~~~~ 374 (375)
T PRK13009 322 GGTSDARFIAD-YGAQVVEFGPV--NATIHKVN---ECVSVADLEKLTRIYERILERLL 374 (375)
T ss_pred CCCccHHHHHH-cCCCeEEeccC--cccCCCCC---CcEEHHHHHHHHHHHHHHHHHHh
Confidence 45689888888 89999976543 24589987 78889999998888888877653
No 98
>TIGR01246 dapE_proteo succinyl-diaminopimelate desuccinylase, proteobacterial clade. This model describes a proteobacterial subset of succinyl-diaminopimelate desuccinylases. An experimentally confirmed Gram-positive lineage succinyl-diaminopimelate desuccinylase has been described for Corynebacterium glutamicum, and a neighbor-joining tree shows the seed members, SP:Q59284, and putative archaeal members such as TrEMBL:O58003 in a single clade. However, the archaeal members differ substantially, share a number of motifs with acetylornithine deacetylases rather than succinyl-diaminopimelate desuccinylases, and are not taken as trusted examples of succinyl-diaminopimelate desuccinylases. This model is limited to proteobacterial members for this reason.
Probab=22.70 E-value=1.4e+02 Score=32.66 Aligned_cols=53 Identities=19% Similarity=0.199 Sum_probs=39.0
Q ss_pred CCCCCChHhhhhcCCCcEEEEeeeCCCCCCCCCCCCcCCCCHhHHHHHHHHHHHHHHHH
Q 005039 99 FETATDFQVYTEVAGLSGLDFAYTDKSAVYHTKNDRLDLLKPGSLQHLGENMLDFLLQT 157 (717)
Q Consensus 99 ipsdTD~~~F~~~~GIPgLd~a~~~~~~~YHT~~Dt~d~i~~~slq~~g~~~l~lv~~l 157 (717)
.++.||.+.|.. .|+|++.+.-. ....|++. |+++.+.+.+..+.+..++..|
T Consensus 318 ~~g~~d~~~~~~-~g~p~~~~Gp~--~~~~H~~~---E~i~i~~l~~~~~~~~~~l~~~ 370 (370)
T TIGR01246 318 GGGTSDGRFIAL-MGAEVVEFGPV--NATIHKVN---ECVSIEDLEKLSDVYQDLLENL 370 (370)
T ss_pred CCCCchHHHHHH-cCCCEEEecCC--cccCCCCC---ceeEHHHHHHHHHHHHHHHHhC
Confidence 356789988887 79999876432 34578866 6778888888888777776553
No 99
>PRK07522 acetylornithine deacetylase; Provisional
Probab=22.60 E-value=1.2e+02 Score=33.42 Aligned_cols=54 Identities=13% Similarity=0.168 Sum_probs=42.0
Q ss_pred CCCCChHhhhhcCCCcEEEEeeeCCCCCCCCCCCCcCCCCHhHHHHHHHHHHHHHHHHh
Q 005039 100 ETATDFQVYTEVAGLSGLDFAYTDKSAVYHTKNDRLDLLKPGSLQHLGENMLDFLLQTA 158 (717)
Q Consensus 100 psdTD~~~F~~~~GIPgLd~a~~~~~~~YHT~~Dt~d~i~~~slq~~g~~~l~lv~~la 158 (717)
+..||-..|.. .|+|.+-+.. ++....||+. |+++.+.+-+..+.+..++..+|
T Consensus 331 ~~~td~~~~~~-~gip~v~~Gp-g~~~~~H~~~---E~i~i~~l~~~~~~~~~~~~~~~ 384 (385)
T PRK07522 331 AYGTEAGLFQR-AGIPTVVCGP-GSIEQAHKPD---EFVELAQLAACEAFLRRLLASLA 384 (385)
T ss_pred eeecchHHhcc-CCCCEEEECC-CChhhCCCCC---ccccHHHHHHHHHHHHHHHHHHh
Confidence 45689999986 8999986542 2234789976 78889999998988888888776
No 100
>TIGR03320 ygeY M20/DapE family protein YgeY. Members of this protein family, including the YgeY protein of Escherichia coli, typically are found in extended genomic regions associated with purine catabolism. Homologs include peptidases and deacylases of the M20/M25 /M40 and DapE/ArgE families. The function is unknown.
Probab=20.66 E-value=1.4e+02 Score=33.08 Aligned_cols=40 Identities=8% Similarity=0.005 Sum_probs=28.5
Q ss_pred ChHHHHHHhcCCCCCCceEEEEecCccccCc-cchHHHHHh
Q 005039 1 MLELARVMSQWAHEFKNAVIFLFNTGEEEGL-NGAHSFVTQ 40 (717)
Q Consensus 1 mLElaR~l~~~~~~p~rtIiFlf~~aEE~GL-lGS~~Fv~~ 40 (717)
||..+++|.+.+.+++.+|+|.+..+||.+- .|++..+++
T Consensus 116 ~l~A~~~l~~~g~~~~~~i~~~~~~dEE~~~g~~~~~~~~~ 156 (395)
T TIGR03320 116 MVYAGKIIKDLGLLDDYTLLVTGTVQEEDCDGLCWQYIIEE 156 (395)
T ss_pred HHHHHHHHHHcCCCCCceEEEEecccccccCchHHHHHHHh
Confidence 4677888876666678899999999999742 334556644
No 101
>PRK06915 acetylornithine deacetylase; Validated
Probab=20.53 E-value=1.7e+02 Score=32.82 Aligned_cols=56 Identities=20% Similarity=0.216 Sum_probs=42.3
Q ss_pred CCCCChHhhhhcCCCcEEEEeeeCCCCCCCCCCCCcCCCCHhHHHHHHHHHHHHHHHHhc
Q 005039 100 ETATDFQVYTEVAGLSGLDFAYTDKSAVYHTKNDRLDLLKPGSLQHLGENMLDFLLQTAS 159 (717)
Q Consensus 100 psdTD~~~F~~~~GIPgLd~a~~~~~~~YHT~~Dt~d~i~~~slq~~g~~~l~lv~~la~ 159 (717)
+.+||...|.+..|+|++.+.. +....-|++. ++++.+.+....+.+..++..+..
T Consensus 364 ~g~tD~~~~~~~~giP~v~fGp-g~~~~aH~~d---E~v~~~~l~~~~~~~~~ll~~~~~ 419 (422)
T PRK06915 364 PWGTDGGLLTQIAGVPTIVFGP-GETKVAHYPN---EYIEVDKMIAAAKIIALTLLDWCE 419 (422)
T ss_pred eeeccHHHHhccCCCCEEEECC-CCccccCCCC---ceeEHHHHHHHHHHHHHHHHHHhC
Confidence 4579999998833999986543 2234579877 678899999988888888877754
Done!