Query 005040
Match_columns 717
No_of_seqs 630 out of 5325
Neff 9.8
Searched_HMMs 29240
Date Mon Mar 25 13:33:29 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/005040.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/005040hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3omv_A RAF proto-oncogene seri 100.0 2.4E-54 8.1E-59 439.6 20.4 263 427-710 36-303 (307)
2 4asz_A BDNF/NT-3 growth factor 100.0 1.6E-54 5.3E-59 441.3 16.8 261 427-710 13-292 (299)
3 4aoj_A High affinity nerve gro 100.0 9.8E-54 3.3E-58 441.6 21.3 259 427-708 41-320 (329)
4 4gt4_A Tyrosine-protein kinase 100.0 1.2E-53 4.1E-58 436.7 16.1 256 427-705 26-304 (308)
5 4fih_A Serine/threonine-protei 100.0 8.7E-53 3E-57 433.2 16.5 249 427-700 74-323 (346)
6 4aw0_A HPDK1, 3-phosphoinositi 100.0 1.8E-52 6E-57 424.4 14.7 248 427-699 32-283 (311)
7 4b9d_A Serine/threonine-protei 100.0 1.6E-52 5.5E-57 431.9 14.5 248 427-700 24-276 (350)
8 4g3f_A NF-kappa-beta-inducing 100.0 3.8E-52 1.3E-56 427.3 16.3 256 426-708 57-317 (336)
9 3hmm_A TGF-beta receptor type- 100.0 4.7E-52 1.6E-56 426.4 16.3 270 427-708 3-298 (303)
10 4ase_A Vascular endothelial gr 100.0 2E-51 7E-56 427.6 18.1 263 425-709 62-349 (353)
11 4fie_A Serine/threonine-protei 100.0 1.6E-51 5.4E-56 434.3 16.8 249 427-700 151-400 (423)
12 3fpq_A Serine/threonine-protei 100.0 8.7E-51 3E-55 410.4 21.2 244 430-700 29-282 (290)
13 3hyh_A Carbon catabolite-derep 100.0 7.6E-51 2.6E-55 407.0 17.3 245 427-700 13-262 (275)
14 3ubd_A Ribosomal protein S6 ki 100.0 1.7E-50 6E-55 410.0 9.2 242 427-695 24-271 (304)
15 4g31_A Eukaryotic translation 100.0 7.2E-49 2.5E-53 400.4 17.7 249 427-700 5-279 (299)
16 3rgz_A Protein brassinosteroid 100.0 6.8E-46 2.3E-50 431.7 28.1 359 2-364 308-756 (768)
17 4b99_A Mitogen-activated prote 100.0 1.7E-46 5.8E-51 397.6 19.6 267 427-700 54-344 (398)
18 4f9c_A Cell division cycle 7-r 100.0 3.1E-46 1.1E-50 391.5 17.7 266 425-700 19-352 (361)
19 3v5w_A G-protein coupled recep 100.0 4.8E-45 1.7E-49 401.6 23.2 248 426-700 188-449 (689)
20 3uto_A Twitchin; kinase, muscl 100.0 4.7E-45 1.6E-49 405.9 21.3 252 426-700 156-410 (573)
21 2qkw_B Protein kinase; three-h 100.0 1.2E-44 4.1E-49 377.5 16.7 282 418-708 30-316 (321)
22 3s95_A LIMK-1, LIM domain kina 100.0 1.7E-43 5.7E-48 367.0 21.5 266 426-712 9-287 (310)
23 3soc_A Activin receptor type-2 100.0 8.1E-44 2.8E-48 371.1 18.2 274 426-708 23-319 (322)
24 3fxz_A Serine/threonine-protei 100.0 2.9E-43 1E-47 362.3 20.0 250 426-700 19-269 (297)
25 2psq_A Fibroblast growth facto 100.0 5.8E-43 2E-47 371.3 21.6 263 426-711 80-368 (370)
26 3uim_A Brassinosteroid insensi 100.0 2.5E-43 8.4E-48 368.6 18.4 285 414-705 17-309 (326)
27 3cbl_A C-FES, proto-oncogene t 100.0 8.2E-44 2.8E-48 379.2 13.5 261 426-709 113-376 (377)
28 3ugc_A Tyrosine-protein kinase 100.0 1.4E-43 4.8E-48 364.9 14.2 276 426-710 9-294 (295)
29 3p86_A Serine/threonine-protei 100.0 5.4E-43 1.8E-47 362.2 17.8 262 424-710 34-301 (309)
30 3lb7_A RAF proto-oncogene seri 100.0 1.4E-42 4.9E-47 358.8 20.6 263 426-710 35-303 (307)
31 3kul_A Ephrin type-A receptor 100.0 7E-43 2.4E-47 364.3 17.8 263 426-711 48-317 (325)
32 2nru_A Interleukin-1 receptor- 100.0 9.3E-42 3.2E-46 353.5 26.0 281 414-707 12-306 (307)
33 3rgz_A Protein brassinosteroid 100.0 1.1E-41 3.8E-46 396.3 27.5 334 2-343 283-715 (768)
34 2c30_A Serine/threonine-protei 100.0 3.2E-42 1.1E-46 358.6 20.1 262 415-701 23-295 (321)
35 3fe3_A MAP/microtubule affinit 100.0 2.1E-42 7.3E-47 360.1 18.1 248 426-701 14-265 (328)
36 3vhe_A Vascular endothelial gr 100.0 2.3E-42 7.8E-47 366.5 17.9 271 416-708 11-356 (359)
37 2id5_A Lingo-1, leucine rich r 100.0 2.3E-41 7.7E-46 373.0 26.3 338 1-349 23-360 (477)
38 3sxs_A Cytoplasmic tyrosine-pr 100.0 1.6E-42 5.3E-47 351.8 15.6 259 426-709 7-266 (268)
39 4hcu_A Tyrosine-protein kinase 100.0 3.4E-42 1.2E-46 349.5 17.8 258 426-708 9-267 (269)
40 3niz_A Rhodanese family protei 100.0 1.1E-41 3.8E-46 353.0 21.4 267 426-700 20-300 (311)
41 2qol_A Ephrin receptor; recept 100.0 2.1E-42 7.1E-47 367.2 16.2 261 426-709 44-311 (373)
42 3tki_A Serine/threonine-protei 100.0 3.1E-42 1.1E-46 358.9 16.8 253 426-700 6-261 (323)
43 3q4u_A Activin receptor type-1 100.0 2.1E-41 7.3E-46 349.7 22.7 266 426-705 7-300 (301)
44 3zgw_A Maternal embryonic leuc 100.0 1.8E-42 6.3E-47 362.5 14.9 251 425-701 8-261 (347)
45 1tki_A Titin; serine kinase, m 100.0 1.1E-41 3.8E-46 354.2 20.7 251 426-700 4-257 (321)
46 1o6l_A RAC-beta serine/threoni 100.0 1.3E-41 4.4E-46 355.2 21.1 248 426-700 4-260 (337)
47 3tt0_A Basic fibroblast growth 100.0 1.5E-41 5.3E-46 362.5 22.1 264 426-712 68-357 (382)
48 1luf_A Muscle-specific tyrosin 100.0 4.2E-42 1.4E-46 362.0 17.0 267 424-713 44-341 (343)
49 1t46_A HOMO sapiens V-KIT hard 100.0 1.7E-41 5.8E-46 352.6 21.2 266 426-713 22-313 (313)
50 3poz_A Epidermal growth factor 100.0 2.7E-42 9.3E-47 360.4 14.9 258 426-707 14-278 (327)
51 3og7_A AKAP9-BRAF fusion prote 100.0 5.6E-42 1.9E-46 351.7 16.2 260 426-707 23-288 (289)
52 4eqm_A Protein kinase; transfe 100.0 1E-41 3.5E-46 350.4 18.1 261 426-707 10-275 (294)
53 2yab_A Death-associated protei 100.0 2.5E-41 8.5E-46 356.2 20.9 251 426-700 11-272 (361)
54 3l9p_A Anaplastic lymphoma kin 100.0 4E-42 1.4E-46 364.6 14.8 260 426-708 70-346 (367)
55 2ivs_A Proto-oncogene tyrosine 100.0 2.9E-41 9.8E-46 351.0 20.8 260 426-708 22-312 (314)
56 3v47_A TOLL-like receptor 5B a 100.0 5.1E-41 1.8E-45 368.1 23.7 314 1-326 22-412 (455)
57 3op5_A Serine/threonine-protei 100.0 6.5E-42 2.2E-46 363.2 16.0 272 425-710 33-332 (364)
58 1rjb_A FL cytokine receptor; k 100.0 2.2E-41 7.7E-46 356.6 19.5 266 425-712 43-339 (344)
59 3soa_A Calcium/calmodulin-depe 100.0 5.3E-41 1.8E-45 363.0 22.5 254 424-700 8-267 (444)
60 3gen_A Tyrosine-protein kinase 100.0 2.1E-41 7.1E-46 346.5 18.3 259 425-708 22-281 (283)
61 3mdy_A Bone morphogenetic prot 100.0 2.1E-40 7.1E-45 348.2 26.2 273 419-709 29-333 (337)
62 4aw2_A Serine/threonine-protei 100.0 3.5E-42 1.2E-46 370.7 12.7 261 420-700 67-338 (437)
63 2bdw_A Hypothetical protein K1 100.0 5.2E-41 1.8E-45 354.9 21.4 253 425-701 27-285 (362)
64 1kob_A Twitchin; kinase, intra 100.0 4.6E-41 1.6E-45 357.4 21.0 252 426-700 50-304 (387)
65 4f0f_A Serine/threonine-protei 100.0 3.9E-41 1.3E-45 345.2 19.6 252 427-705 19-287 (287)
66 2pvf_A Fibroblast growth facto 100.0 5.2E-41 1.8E-45 352.0 20.7 263 426-711 34-322 (334)
67 1csn_A Casein kinase-1; phosph 100.0 5.1E-41 1.7E-45 346.3 20.3 266 426-711 9-287 (298)
68 3c0i_A Peripheral plasma membr 100.0 5.1E-41 1.8E-45 354.0 20.7 252 426-700 23-286 (351)
69 3txo_A PKC-L, NPKC-ETA, protei 100.0 1.3E-41 4.6E-46 357.4 15.8 244 425-695 21-269 (353)
70 1ob3_A PFPK5, cell division co 100.0 1.4E-41 4.7E-46 348.6 15.3 266 427-700 2-280 (288)
71 4euu_A Serine/threonine-protei 100.0 9.7E-41 3.3E-45 347.7 21.9 273 426-705 8-307 (319)
72 4fr4_A YANK1, serine/threonine 100.0 1.3E-40 4.4E-45 352.7 23.1 248 427-700 15-271 (384)
73 3h4j_B AMPK kdaid, SNF1-like p 100.0 2.1E-41 7.1E-46 353.1 16.7 246 426-700 8-258 (336)
74 3o0g_A Cell division protein k 100.0 3.6E-41 1.2E-45 346.3 18.2 267 427-700 2-282 (292)
75 3qup_A Tyrosine-protein kinase 100.0 1.3E-41 4.5E-46 355.0 15.2 260 425-707 21-298 (323)
76 2eva_A TAK1 kinase - TAB1 chim 100.0 7.2E-41 2.4E-45 346.4 20.3 257 427-711 8-267 (307)
77 4dc2_A Protein kinase C IOTA t 100.0 3E-41 1E-45 358.6 17.8 249 426-695 51-307 (396)
78 2y0a_A Death-associated protei 100.0 8.1E-41 2.8E-45 348.8 20.7 251 426-700 10-271 (326)
79 2izr_A Casein kinase I isoform 100.0 3.1E-41 1.1E-45 353.1 17.7 264 426-709 8-283 (330)
80 1mp8_A Focal adhesion kinase 1 100.0 4.6E-41 1.6E-45 343.4 18.3 258 426-708 14-277 (281)
81 1fot_A TPK1 delta, CAMP-depend 100.0 8.2E-41 2.8E-45 346.6 20.0 245 426-700 5-258 (318)
82 4fvq_A Tyrosine-protein kinase 100.0 9.5E-42 3.3E-46 350.1 12.8 255 426-710 7-278 (289)
83 3kex_A Receptor tyrosine-prote 100.0 1.9E-41 6.6E-46 353.7 15.1 257 427-707 13-276 (325)
84 3t9t_A Tyrosine-protein kinase 100.0 5.1E-41 1.7E-45 340.5 17.7 258 426-708 7-265 (267)
85 2xir_A Vascular endothelial gr 100.0 4.6E-41 1.6E-45 349.8 17.6 272 417-710 17-313 (316)
86 1k9a_A Carboxyl-terminal SRC k 100.0 3.9E-41 1.3E-45 366.7 17.8 252 426-708 192-446 (450)
87 3lxp_A Non-receptor tyrosine-p 100.0 4.8E-41 1.6E-45 349.6 17.6 269 429-713 33-316 (318)
88 4e5w_A Tyrosine-protein kinase 100.0 2.9E-41 9.9E-46 348.9 15.8 269 427-706 21-301 (302)
89 3dtc_A Mitogen-activated prote 100.0 2.3E-41 7.7E-46 343.9 14.6 251 426-705 6-271 (271)
90 3v8s_A RHO-associated protein 100.0 1.8E-41 6.2E-46 362.4 14.6 258 421-701 63-330 (410)
91 2zv2_A Calcium/calmodulin-depe 100.0 2.2E-41 7.4E-46 349.0 14.6 249 426-700 12-292 (298)
92 3gni_B Strad alpha; kinase fol 100.0 1.1E-40 3.8E-45 357.2 20.5 271 426-701 24-334 (389)
93 2w1i_A JAK2; chromosomal rearr 100.0 2.8E-41 9.5E-46 352.8 15.5 277 426-710 40-325 (326)
94 2x4f_A Myosin light chain kina 100.0 6.5E-41 2.2E-45 355.5 18.4 248 430-700 92-342 (373)
95 1xjd_A Protein kinase C, theta 100.0 2.7E-41 9.1E-46 353.7 15.2 250 423-699 13-268 (345)
96 1b6c_B TGF-B superfamily recep 100.0 5.4E-40 1.8E-44 345.8 25.3 280 416-709 31-338 (342)
97 3kmu_A ILK, integrin-linked ki 100.0 4.7E-41 1.6E-45 341.5 16.4 252 426-707 9-270 (271)
98 3lxl_A Tyrosine-protein kinase 100.0 1.7E-41 5.7E-46 354.8 13.3 276 427-710 23-306 (327)
99 3dbq_A Dual specificity protei 100.0 6.3E-41 2.2E-45 352.5 17.8 252 426-701 8-274 (343)
100 1qcf_A Haematopoetic cell kina 100.0 9.2E-42 3.1E-46 372.4 11.7 263 425-713 186-450 (454)
101 3f66_A Hepatocyte growth facto 100.0 9.9E-41 3.4E-45 344.2 18.7 264 426-712 24-296 (298)
102 3g2f_A Bone morphogenetic prot 100.0 3.4E-41 1.2E-45 354.0 15.3 277 426-712 12-323 (336)
103 2vd5_A DMPK protein; serine/th 100.0 4E-41 1.4E-45 359.9 15.9 259 421-700 55-327 (412)
104 3a8x_A Protein kinase C IOTA t 100.0 1.2E-40 4E-45 349.6 19.1 249 426-695 8-264 (345)
105 3p1a_A MYT1 kinase, membrane-a 100.0 1.3E-40 4.3E-45 345.2 19.0 244 427-700 57-304 (311)
106 3brb_A Proto-oncogene tyrosine 100.0 1.5E-40 5.2E-45 345.3 19.6 267 422-711 29-312 (313)
107 3lzb_A Epidermal growth factor 100.0 1.8E-41 6.1E-46 353.9 12.6 258 426-707 14-278 (327)
108 1rdq_E PKA C-alpha, CAMP-depen 100.0 1.1E-40 3.9E-45 350.2 18.5 244 427-700 41-293 (350)
109 2w4o_A Calcium/calmodulin-depe 100.0 9E-41 3.1E-45 351.6 17.4 251 425-700 51-305 (349)
110 1u59_A Tyrosine-protein kinase 100.0 1.9E-40 6.5E-45 340.0 19.2 263 427-713 9-278 (287)
111 2i1m_A Macrophage colony-stimu 100.0 1.4E-40 4.8E-45 348.8 18.4 264 424-709 43-328 (333)
112 3c1x_A Hepatocyte growth facto 100.0 2.7E-41 9.3E-46 358.1 13.0 263 427-712 89-360 (373)
113 2wqm_A Serine/threonine-protei 100.0 3.1E-40 1.1E-44 342.5 20.6 263 426-710 31-300 (310)
114 2pmi_A Negative RE, cyclin-dep 100.0 8.5E-41 2.9E-45 347.5 16.3 267 426-700 4-293 (317)
115 2zmd_A Dual specificity protei 100.0 2.1E-40 7.3E-45 353.9 19.7 251 427-701 56-321 (390)
116 3pls_A Macrophage-stimulating 100.0 2.1E-40 7.2E-45 341.7 19.0 264 427-712 21-292 (298)
117 2yex_A Serine/threonine-protei 100.0 2.6E-40 9E-45 337.0 19.5 253 426-700 6-261 (276)
118 3oz6_A Mitogen-activated prote 100.0 1.9E-40 6.5E-45 355.1 19.0 270 424-701 6-329 (388)
119 2i0e_A Protein kinase C-beta I 100.0 1.1E-40 3.9E-45 350.0 16.9 249 425-700 18-276 (353)
120 1opk_A P150, C-ABL, proto-onco 100.0 4.2E-41 1.5E-45 370.5 14.2 256 426-706 219-477 (495)
121 2buj_A Serine/threonine-protei 100.0 1.6E-40 5.5E-45 345.8 17.4 266 426-712 28-311 (317)
122 3f3z_A Calcium/calmodulin-depe 100.0 3.2E-40 1.1E-44 336.5 19.2 251 425-700 7-261 (277)
123 1p4o_A Insulin-like growth fac 100.0 3E-41 1E-45 352.2 11.7 266 424-712 22-304 (322)
124 1mqb_A Ephrin type-A receptor 100.0 1.9E-40 6.6E-45 347.2 17.7 260 427-709 44-311 (333)
125 3cc6_A Protein tyrosine kinase 100.0 4.7E-40 1.6E-44 336.0 20.1 259 426-709 11-275 (281)
126 1fmk_A C-SRC, P60-SRC, tyrosin 100.0 2.8E-41 9.7E-46 368.0 11.7 262 426-713 183-446 (452)
127 3cok_A Serine/threonine-protei 100.0 2.3E-40 7.7E-45 337.8 17.6 249 426-700 10-262 (278)
128 3kk8_A Calcium/calmodulin depe 100.0 8.6E-40 2.9E-44 334.7 21.8 251 426-700 5-261 (284)
129 3hko_A Calcium/calmodulin-depe 100.0 2.3E-40 8E-45 349.0 18.1 259 422-700 21-330 (345)
130 3uc3_A Serine/threonine-protei 100.0 1.6E-40 5.4E-45 351.3 16.8 253 426-701 19-275 (361)
131 3ork_A Serine/threonine protei 100.0 2.7E-41 9.2E-46 350.4 10.6 261 426-707 11-281 (311)
132 4hgt_A Casein kinase I isoform 100.0 4.7E-40 1.6E-44 338.8 19.5 265 425-710 7-283 (296)
133 3kfa_A Tyrosine-protein kinase 100.0 1.1E-40 3.8E-45 342.0 14.8 259 425-708 11-272 (288)
134 3fdn_A Serine/threonine-protei 100.0 3.2E-40 1.1E-44 336.9 18.0 248 425-701 7-258 (279)
135 3qd2_B Eukaryotic translation 100.0 2E-40 6.7E-45 347.6 16.8 250 426-700 5-325 (332)
136 3a62_A Ribosomal protein S6 ki 100.0 3E-40 1E-44 344.7 17.9 248 426-700 16-276 (327)
137 1u5q_A Serine/threonine protei 100.0 1.6E-40 5.6E-45 349.1 15.8 246 427-701 54-306 (348)
138 3kn6_A Ribosomal protein S6 ki 100.0 2.6E-40 8.8E-45 344.7 17.0 248 432-700 16-270 (325)
139 2h34_A Serine/threonine-protei 100.0 3.1E-40 1.1E-44 342.0 17.4 265 426-713 33-302 (309)
140 3gxj_A TGF-beta receptor type- 100.0 6.4E-42 2.2E-46 354.0 4.7 270 426-709 2-299 (303)
141 3uzp_A CKI-delta, CKID, casein 100.0 7E-40 2.4E-44 337.5 19.8 264 426-710 8-283 (296)
142 4eut_A Serine/threonine-protei 100.0 2E-40 6.8E-45 355.5 16.3 276 426-708 8-310 (396)
143 2y94_A 5'-AMP-activated protei 100.0 5.5E-40 1.9E-44 357.2 19.9 246 427-700 16-266 (476)
144 3llt_A Serine/threonine kinase 100.0 3.8E-40 1.3E-44 349.4 18.2 206 417-633 25-262 (360)
145 1qpc_A LCK kinase; alpha beta 100.0 5.3E-40 1.8E-44 335.3 18.5 262 426-713 12-275 (279)
146 2v62_A Serine/threonine-protei 100.0 1E-40 3.4E-45 351.3 13.5 267 426-707 36-328 (345)
147 2acx_A G protein-coupled recep 100.0 5.6E-40 1.9E-44 361.5 19.9 250 426-700 183-444 (576)
148 3mtl_A Cell division protein k 100.0 1.3E-40 4.4E-45 347.2 14.1 266 427-700 2-281 (324)
149 2a2a_A Death-associated protei 100.0 1E-39 3.5E-44 340.2 20.5 251 426-700 11-272 (321)
150 3e7e_A HBUB1, BUB1A, mitotic c 100.0 8.6E-40 3E-44 347.1 20.3 255 425-710 63-342 (365)
151 2ozo_A Tyrosine-protein kinase 100.0 3.2E-40 1.1E-44 372.0 18.0 262 429-714 337-605 (613)
152 2yfx_A Tyrosine-protein kinase 100.0 5.1E-40 1.8E-44 343.4 18.2 259 426-707 29-304 (327)
153 2r5t_A Serine/threonine-protei 100.0 1.9E-40 6.4E-45 350.9 14.8 250 426-702 37-291 (373)
154 2eue_A Carbon catabolite derep 100.0 3.6E-40 1.2E-44 335.8 16.3 245 427-700 13-262 (275)
155 2ac3_A MAP kinase-interacting 100.0 2.4E-40 8.3E-45 344.3 15.1 266 427-700 12-295 (316)
156 4agu_A Cyclin-dependent kinase 100.0 8E-40 2.7E-44 339.6 18.9 265 427-700 3-284 (311)
157 3is5_A Calcium-dependent prote 100.0 3.2E-40 1.1E-44 337.8 15.5 250 426-700 21-278 (285)
158 4ejn_A RAC-alpha serine/threon 100.0 2E-40 6.9E-45 361.3 14.9 249 426-700 147-404 (446)
159 2jii_A Serine/threonine-protei 100.0 1.4E-40 4.8E-45 351.3 13.0 265 427-710 42-339 (352)
160 3vq2_A TLR4, TOLL-like recepto 100.0 3.8E-39 1.3E-43 366.5 25.6 190 159-349 370-562 (606)
161 3dls_A PAS domain-containing s 100.0 1.9E-40 6.6E-45 347.0 13.7 243 425-701 22-275 (335)
162 1xbb_A Tyrosine-protein kinase 100.0 1.5E-39 5.2E-44 334.0 19.8 260 426-710 15-282 (291)
163 1nxk_A MAP kinase-activated pr 100.0 1.9E-39 6.4E-44 347.6 21.0 249 427-701 61-322 (400)
164 3g33_A Cell division protein k 100.0 6.8E-40 2.3E-44 339.5 17.1 267 425-700 7-296 (308)
165 3c4z_A Rhodopsin kinase; Ser/T 100.0 1.6E-39 5.3E-44 357.4 20.2 248 426-695 184-438 (543)
166 1fvr_A Tyrosine-protein kinase 100.0 4.5E-40 1.6E-44 343.9 15.2 259 427-711 25-304 (327)
167 1t4h_A Serine/threonine-protei 100.0 4.3E-39 1.5E-43 330.5 22.1 247 427-700 26-282 (290)
168 1u46_A ACK-1, activated CDC42 100.0 2.8E-40 9.6E-45 339.6 13.2 260 426-708 17-285 (291)
169 1ua2_A CAK, cell division prot 100.0 7.3E-40 2.5E-44 344.9 16.6 271 423-701 6-292 (346)
170 3ttj_A Mitogen-activated prote 100.0 1.2E-39 4.1E-44 355.4 18.8 264 426-701 61-356 (464)
171 3ll6_A Cyclin G-associated kin 100.0 1.2E-39 4E-44 342.4 17.8 257 426-709 27-310 (337)
172 3i6u_A CDS1, serine/threonine- 100.0 1.2E-39 4.1E-44 351.6 18.3 253 424-700 132-399 (419)
173 2y7j_A Phosphorylase B kinase 100.0 5.1E-39 1.8E-43 340.4 22.6 258 419-700 86-359 (365)
174 2rku_A Serine/threonine-protei 100.0 1.6E-39 5.5E-44 334.3 18.1 249 426-701 14-266 (294)
175 3rp9_A Mitogen-activated prote 100.0 1.9E-39 6.4E-44 355.3 19.7 195 426-626 52-280 (458)
176 2qr7_A Ribosomal protein S6 ki 100.0 1E-39 3.5E-44 342.0 16.8 251 425-700 20-277 (342)
177 1cm8_A Phosphorylated MAP kina 100.0 2.4E-39 8.4E-44 343.0 19.8 262 426-700 24-307 (367)
178 2jam_A Calcium/calmodulin-depe 100.0 2.6E-39 8.9E-44 334.5 19.5 251 425-700 7-261 (304)
179 3gbz_A Kinase, CMGC CDK; ssgci 100.0 4E-40 1.4E-44 344.3 13.4 268 424-700 31-318 (329)
180 3bhy_A Death-associated protei 100.0 3.7E-39 1.3E-43 329.7 20.4 259 426-708 4-275 (283)
181 1byg_A CSK, protein (C-termina 100.0 6E-40 2.1E-44 334.6 14.4 253 426-709 20-275 (278)
182 3eqc_A Dual specificity mitoge 100.0 4.4E-40 1.5E-44 348.9 13.8 264 426-700 32-324 (360)
183 4aaa_A Cyclin-dependent kinase 100.0 7.7E-40 2.6E-44 342.7 15.4 267 426-700 24-306 (331)
184 2j7t_A Serine/threonine-protei 100.0 3.1E-40 1.1E-44 341.1 12.3 252 426-700 18-275 (302)
185 3mwu_A Calmodulin-domain prote 100.0 3.9E-39 1.3E-43 355.2 21.5 251 425-701 20-277 (486)
186 3nsz_A CK II alpha, casein kin 100.0 2.2E-39 7.5E-44 339.3 18.2 260 427-700 36-319 (330)
187 2vgo_A Serine/threonine-protei 100.0 2.3E-39 7.7E-44 331.5 17.8 246 426-700 13-262 (284)
188 2h8h_A Proto-oncogene tyrosine 100.0 1.2E-40 4.3E-45 370.1 9.0 263 425-713 265-529 (535)
189 2owb_A Serine/threonine-protei 100.0 1.8E-39 6.1E-44 340.3 17.3 248 426-700 40-291 (335)
190 3fme_A Dual specificity mitoge 100.0 2.5E-39 8.5E-44 332.3 18.0 250 426-700 6-266 (290)
191 4fl3_A Tyrosine-protein kinase 100.0 2.1E-39 7.1E-44 366.2 18.9 253 433-710 375-634 (635)
192 3com_A Serine/threonine-protei 100.0 2.1E-39 7.3E-44 336.8 17.5 251 425-700 27-278 (314)
193 3byv_A Rhoptry kinase; malaria 100.0 2E-40 6.9E-45 353.3 9.5 247 426-707 72-368 (377)
194 3a7i_A MST3 kinase, serine/thr 100.0 5.5E-39 1.9E-43 331.9 20.0 249 426-701 21-271 (303)
195 3sv0_A Casein kinase I-like; t 100.0 5E-39 1.7E-43 350.3 20.4 263 426-709 6-280 (483)
196 2a19_B Interferon-induced, dou 100.0 8.1E-40 2.8E-44 334.8 13.3 250 425-709 9-276 (284)
197 3n9x_A Phosphotransferase; mal 100.0 3.4E-39 1.2E-43 349.7 18.7 200 426-631 25-253 (432)
198 2clq_A Mitogen-activated prote 100.0 5.2E-39 1.8E-43 330.8 19.0 251 427-700 22-278 (295)
199 3j0a_A TOLL-like receptor 5; m 100.0 5.3E-38 1.8E-42 369.1 29.8 334 5-349 66-564 (844)
200 3lij_A Calcium/calmodulin depe 100.0 3.7E-39 1.3E-43 355.9 18.5 249 426-700 36-291 (494)
201 2w5a_A Serine/threonine-protei 100.0 3E-39 1E-43 329.7 16.4 253 426-703 5-270 (279)
202 3mi9_A Cell division protein k 100.0 4.6E-39 1.6E-43 339.8 18.1 269 426-700 16-311 (351)
203 3q5i_A Protein kinase; CDPK, m 100.0 1.1E-38 3.8E-43 353.0 22.0 251 425-700 34-301 (504)
204 2h6d_A 5'-AMP-activated protei 100.0 5.9E-39 2E-43 327.0 18.1 248 426-701 10-262 (276)
205 3q60_A ROP5B; pseudokinase, tr 100.0 8.7E-40 3E-44 347.8 12.4 254 426-700 61-352 (371)
206 2vwi_A Serine/threonine-protei 100.0 9.1E-40 3.1E-44 337.8 12.0 262 424-700 12-287 (303)
207 2r3i_A Cell division protein k 100.0 4.1E-39 1.4E-43 332.2 16.9 266 427-700 3-283 (299)
208 3pg1_A Mitogen-activated prote 100.0 8.7E-39 3E-43 339.2 19.8 273 419-700 14-316 (362)
209 3nyv_A Calmodulin-domain prote 100.0 3.1E-39 1.1E-43 356.1 16.8 249 426-700 25-281 (484)
210 3qyz_A Mitogen-activated prote 100.0 8.9E-39 3E-43 339.0 19.6 267 426-700 26-313 (364)
211 2pml_X PFPK7, Ser/Thr protein 100.0 1.6E-39 5.6E-44 342.9 13.8 264 426-700 30-322 (348)
212 2ycf_A Serine/threonine-protei 100.0 7.8E-39 2.7E-43 333.7 18.3 252 425-700 8-274 (322)
213 2xrw_A Mitogen-activated prote 100.0 1.2E-38 4E-43 338.8 19.9 263 426-701 24-319 (371)
214 3an0_A Dual specificity mitoge 100.0 4.7E-39 1.6E-43 338.2 16.7 250 426-700 50-310 (340)
215 4eco_A Uncharacterized protein 100.0 1.5E-38 5E-43 361.6 21.9 332 4-347 239-602 (636)
216 3lm5_A Serine/threonine-protei 100.0 2.4E-39 8.3E-44 338.0 14.2 261 417-700 18-287 (327)
217 3cek_A Dual specificity protei 100.0 8.5E-39 2.9E-43 332.1 17.9 253 425-701 26-293 (313)
218 3kvw_A DYRK2, dual specificity 100.0 1.3E-38 4.5E-43 344.3 20.1 197 426-633 96-302 (429)
219 2fst_X Mitogen-activated prote 100.0 4.1E-39 1.4E-43 340.8 15.6 263 426-701 28-312 (367)
220 3pfq_A PKC-B, PKC-beta, protei 100.0 6.6E-39 2.2E-43 364.6 18.2 245 424-695 338-587 (674)
221 2wtk_C Serine/threonine-protei 100.0 1.6E-38 5.5E-43 328.8 19.5 251 426-701 4-264 (305)
222 4eco_A Uncharacterized protein 100.0 2E-38 6.8E-43 360.5 21.9 327 4-344 198-578 (636)
223 1phk_A Phosphorylase kinase; g 100.0 2.2E-38 7.5E-43 326.6 20.3 252 425-700 15-283 (298)
224 1x8b_A WEE1HU, WEE1-like prote 100.0 2E-38 6.9E-43 325.2 19.9 244 425-700 9-279 (289)
225 3v47_A TOLL-like receptor 5B a 100.0 4.7E-38 1.6E-42 344.5 24.1 323 14-349 12-412 (455)
226 1vzo_A Ribosomal protein S6 ki 100.0 2.1E-39 7.1E-44 342.2 12.5 254 426-701 53-322 (355)
227 3t6q_A CD180 antigen; protein- 100.0 1.5E-37 5.1E-42 353.3 28.7 330 1-342 24-410 (606)
228 3eb0_A Putative uncharacterize 100.0 7.7E-39 2.6E-43 341.9 16.8 271 424-707 4-330 (383)
229 3a79_B TLR6, VLRB.59, TOLL-lik 100.0 8.2E-38 2.8E-42 351.6 25.8 328 1-348 43-513 (562)
230 2z7x_B TOLL-like receptor 1, v 100.0 5.1E-38 1.8E-42 350.2 23.8 327 1-347 12-483 (520)
231 3t6q_A CD180 antigen; protein- 100.0 1.6E-37 5.3E-42 353.2 27.9 329 5-343 50-436 (606)
232 3vq2_A TLR4, TOLL-like recepto 100.0 1.4E-37 4.9E-42 353.5 27.2 159 184-343 371-532 (606)
233 2id5_A Lingo-1, leucine rich r 100.0 1.3E-37 4.3E-42 343.1 25.7 325 13-349 12-337 (477)
234 1wak_A Serine/threonine-protei 100.0 1.2E-38 4.3E-43 342.6 17.1 264 426-700 36-391 (397)
235 2x7f_A TRAF2 and NCK-interacti 100.0 2.5E-39 8.4E-44 338.3 11.0 255 421-700 18-286 (326)
236 2j0j_A Focal adhesion kinase 1 100.0 1.7E-38 5.8E-43 360.0 18.7 259 425-708 388-652 (656)
237 2i6l_A Mitogen-activated prote 100.0 1.7E-38 5.8E-43 331.0 17.2 266 426-700 10-305 (320)
238 1zy4_A Serine/threonine-protei 100.0 2.5E-38 8.4E-43 327.0 17.0 253 425-700 4-283 (303)
239 1z57_A Dual specificity protei 100.0 6.5E-38 2.2E-42 329.4 20.4 263 426-700 13-328 (339)
240 2b9h_A MAP kinase FUS3, mitoge 100.0 4E-38 1.4E-42 333.0 18.5 267 426-700 10-305 (353)
241 2y4i_B KSR2, HKSR2, kinase sup 100.0 8.4E-40 2.9E-44 340.7 5.1 260 425-709 31-304 (319)
242 4exu_A Mitogen-activated prote 100.0 4.5E-38 1.5E-42 334.3 18.4 262 426-701 41-324 (371)
243 2wei_A Calmodulin-domain prote 100.0 6E-38 2E-42 321.4 18.6 252 423-700 18-276 (287)
244 2z63_A TOLL-like receptor 4, v 100.0 1.9E-37 6.5E-42 350.0 24.3 164 185-349 369-535 (570)
245 3rgf_A Cyclin-dependent kinase 100.0 2.1E-38 7.3E-43 341.1 15.3 267 427-700 20-333 (405)
246 2vx3_A Dual specificity tyrosi 100.0 1.4E-37 4.7E-42 332.1 21.3 200 425-633 52-261 (382)
247 1j1b_A Glycogen synthase kinas 100.0 2.9E-38 9.8E-43 340.9 15.8 261 427-700 54-336 (420)
248 4e7w_A Glycogen synthase kinas 100.0 2E-38 6.9E-43 339.3 14.4 262 426-700 39-321 (394)
249 4ecn_A Leucine-rich repeat pro 100.0 2.8E-37 9.7E-42 356.5 24.5 324 4-343 440-817 (876)
250 1blx_A Cyclin-dependent kinase 100.0 5E-38 1.7E-42 328.4 16.2 267 425-700 9-296 (326)
251 2dyl_A Dual specificity mitoge 100.0 6.4E-38 2.2E-42 326.3 15.6 252 426-700 24-283 (318)
252 4g8a_A TOLL-like receptor 4; l 100.0 1.7E-36 5.7E-41 346.9 28.3 338 1-349 43-584 (635)
253 1ziw_A TOLL-like receptor 3; i 100.0 1.8E-36 6.3E-41 349.1 28.9 345 4-349 238-626 (680)
254 2z81_A CD282 antigen, TOLL-lik 100.0 5.9E-37 2E-41 344.2 24.1 152 1-163 17-170 (549)
255 3aln_A Dual specificity mitoge 100.0 3.3E-38 1.1E-42 329.8 12.8 252 427-700 22-285 (327)
256 2eu9_A Dual specificity protei 100.0 2.9E-37 9.9E-42 326.6 20.1 263 426-700 18-333 (355)
257 3coi_A Mitogen-activated prote 100.0 1.4E-37 4.8E-42 328.6 16.7 261 426-700 23-305 (353)
258 3e3p_A Protein kinase, putativ 100.0 2.5E-37 8.6E-42 327.8 18.7 273 420-700 16-314 (360)
259 4ecn_A Leucine-rich repeat pro 100.0 4.3E-37 1.5E-41 355.0 21.8 308 28-343 440-787 (876)
260 3fhr_A MAP kinase-activated pr 100.0 1.4E-37 5E-42 325.6 16.2 252 425-700 26-287 (336)
261 3o6n_A APL1; leucine-rich repe 100.0 2.1E-36 7.2E-41 324.1 25.6 292 11-324 44-354 (390)
262 1q8y_A SR protein kinase; tran 100.0 8.7E-38 3E-42 333.1 14.3 263 427-700 19-333 (373)
263 3a79_B TLR6, VLRB.59, TOLL-lik 100.0 1.9E-36 6.6E-41 340.4 25.8 311 2-330 65-518 (562)
264 2iwi_A Serine/threonine-protei 100.0 5.9E-38 2E-42 325.6 12.2 245 421-700 25-283 (312)
265 2z63_A TOLL-like receptor 4, v 100.0 8.8E-37 3E-41 344.5 22.8 191 140-331 346-540 (570)
266 2rio_A Serine/threonine-protei 100.0 1.5E-37 5.2E-42 336.8 15.8 250 428-700 16-295 (434)
267 2z7x_B TOLL-like receptor 1, v 100.0 1.4E-36 4.6E-41 338.7 23.9 310 2-329 34-488 (520)
268 3j0a_A TOLL-like receptor 5; m 100.0 2.6E-36 8.8E-41 354.8 27.3 312 1-324 16-377 (844)
269 1ziw_A TOLL-like receptor 3; i 100.0 9.7E-36 3.3E-40 343.0 30.5 316 4-327 264-627 (680)
270 3a99_A Proto-oncogene serine/t 100.0 5.2E-38 1.8E-42 326.9 10.2 241 425-700 41-293 (320)
271 3p23_A Serine/threonine-protei 100.0 1.9E-37 6.5E-42 334.8 14.1 250 426-700 23-283 (432)
272 3oja_B Anopheles plasmodium-re 100.0 5E-36 1.7E-40 338.8 25.5 312 9-348 72-383 (597)
273 3qa8_A MGC80376 protein; kinas 100.0 2.4E-37 8.3E-42 343.6 14.0 270 426-706 13-308 (676)
274 3o6n_A APL1; leucine-rich repe 100.0 1.1E-35 3.8E-40 318.6 24.1 294 34-347 43-354 (390)
275 3uqc_A Probable conserved tran 100.0 2E-36 7E-41 308.9 16.8 233 427-709 31-267 (286)
276 4fmz_A Internalin; leucine ric 100.0 4.9E-35 1.7E-39 308.5 25.9 306 7-343 39-344 (347)
277 2z81_A CD282 antigen, TOLL-lik 100.0 1.6E-35 5.4E-40 332.5 23.2 326 5-349 43-514 (549)
278 2ft3_A Biglycan; proteoglycan, 100.0 6.3E-35 2.1E-39 305.4 25.0 299 2-320 17-331 (332)
279 2pzi_A Probable serine/threoni 100.0 3E-36 1E-40 345.4 15.8 241 426-707 79-328 (681)
280 1ogq_A PGIP-2, polygalacturona 100.0 1E-35 3.5E-40 308.0 18.1 255 94-350 51-309 (313)
281 1o6v_A Internalin A; bacterial 100.0 1.5E-34 5.1E-39 317.1 28.3 312 2-346 59-389 (466)
282 3oja_B Anopheles plasmodium-re 100.0 4.5E-35 1.6E-39 331.0 24.4 312 10-347 49-360 (597)
283 4fmz_A Internalin; leucine ric 100.0 2.3E-34 7.8E-39 303.3 26.4 290 2-322 57-346 (347)
284 3m2w_A MAP kinase-activated pr 100.0 2.2E-35 7.4E-40 304.2 18.1 230 426-700 16-256 (299)
285 1xku_A Decorin; proteoglycan, 100.0 4.6E-34 1.6E-38 298.6 27.3 291 11-320 30-330 (330)
286 1ogq_A PGIP-2, polygalacturona 100.0 5.1E-35 1.7E-39 302.8 17.0 253 68-324 50-307 (313)
287 3dzo_A Rhoptry kinase domain; 100.0 9.3E-36 3.2E-40 320.5 11.8 239 427-700 78-363 (413)
288 1xku_A Decorin; proteoglycan, 100.0 1.4E-33 5E-38 294.8 27.1 278 1-296 43-330 (330)
289 2ft3_A Biglycan; proteoglycan, 100.0 1.2E-33 4E-38 295.7 25.1 277 1-296 45-331 (332)
290 4g8a_A TOLL-like receptor 4; l 100.0 1.8E-33 6E-38 321.8 27.5 331 2-344 18-554 (635)
291 1o6v_A Internalin A; bacterial 100.0 1.7E-33 5.8E-38 308.7 25.8 291 2-324 81-390 (466)
292 2vuw_A Serine/threonine-protei 100.0 2.5E-35 8.6E-40 309.0 7.3 243 426-699 19-329 (336)
293 3bz5_A Internalin-J, INLJ; leu 100.0 8.8E-33 3E-37 300.6 26.2 283 5-323 35-332 (457)
294 3bz5_A Internalin-J, INLJ; leu 100.0 2.5E-32 8.5E-37 297.0 28.3 285 1-323 54-353 (457)
295 2z80_A TOLL-like receptor 2, v 100.0 8.5E-32 2.9E-36 284.1 15.3 278 38-327 33-319 (353)
296 2z66_A Variable lymphocyte rec 100.0 2.8E-31 9.7E-36 274.4 17.9 279 15-328 10-293 (306)
297 1jl5_A Outer protein YOPM; leu 100.0 1.1E-30 3.8E-35 283.8 23.0 240 1-275 23-291 (454)
298 2z66_A Variable lymphocyte rec 100.0 3.5E-31 1.2E-35 273.6 17.8 274 71-349 10-291 (306)
299 3zyj_A Leucine-rich repeat-con 100.0 2.3E-30 7.8E-35 281.6 23.4 253 69-327 44-297 (440)
300 3zyi_A Leucine-rich repeat-con 100.0 2.3E-30 7.9E-35 282.6 23.5 253 69-327 55-308 (452)
301 2z80_A TOLL-like receptor 2, v 100.0 2.2E-31 7.6E-36 280.9 14.7 281 10-302 29-318 (353)
302 1ozn_A Reticulon 4 receptor; N 100.0 1.9E-30 6.4E-35 265.2 18.7 216 111-327 50-266 (285)
303 1ozn_A Reticulon 4 receptor; N 100.0 2E-30 7E-35 264.9 18.6 251 96-349 14-265 (285)
304 3zyj_A Leucine-rich repeat-con 100.0 1.5E-29 5E-34 275.3 23.9 249 37-299 44-293 (440)
305 1jl5_A Outer protein YOPM; leu 100.0 4.5E-29 1.5E-33 271.1 27.6 270 12-323 91-371 (454)
306 3zyi_A Leucine-rich repeat-con 100.0 1.8E-29 6.1E-34 275.6 23.9 249 37-299 55-304 (452)
307 1z7x_W Ribonuclease inhibitor; 100.0 6.4E-33 2.2E-37 304.3 -6.3 315 5-323 49-412 (461)
308 4fcg_A Uncharacterized protein 100.0 2.6E-29 9E-34 261.4 20.5 224 94-322 82-314 (328)
309 1wwl_A Monocyte differentiatio 100.0 7.5E-31 2.6E-35 271.6 8.6 250 64-324 39-311 (312)
310 4fcg_A Uncharacterized protein 100.0 4.5E-29 1.5E-33 259.7 20.6 225 68-298 81-314 (328)
311 1z7x_W Ribonuclease inhibitor; 100.0 2.9E-32 9.8E-37 299.1 -7.1 310 12-325 3-357 (461)
312 3g06_A SSPH2 (leucine-rich rep 100.0 6.9E-28 2.4E-32 269.6 28.0 263 12-327 40-302 (622)
313 3o53_A Protein LRIM1, AGAP0063 100.0 1.4E-30 4.9E-35 270.2 5.0 246 66-326 32-280 (317)
314 1wwl_A Monocyte differentiatio 100.0 4.3E-30 1.5E-34 265.9 6.8 251 31-300 38-311 (312)
315 3o53_A Protein LRIM1, AGAP0063 100.0 1.3E-29 4.5E-34 262.9 9.7 268 13-303 11-281 (317)
316 3g06_A SSPH2 (leucine-rich rep 100.0 1.7E-27 5.8E-32 266.4 24.5 257 1-309 52-308 (622)
317 3oja_A Leucine-rich immune mol 100.0 8E-29 2.7E-33 271.8 12.5 234 69-317 35-270 (487)
318 3oja_A Leucine-rich immune mol 100.0 6.4E-29 2.2E-33 272.6 11.4 234 13-269 35-270 (487)
319 2z62_A TOLL-like receptor 4, v 100.0 2.4E-27 8.3E-32 240.9 19.5 210 118-328 29-243 (276)
320 4azs_A Methyltransferase WBDD; 99.9 2.9E-29 9.9E-34 279.0 4.3 184 435-629 242-437 (569)
321 2o6q_A Variable lymphocyte rec 99.9 4E-26 1.4E-30 230.9 22.2 206 118-326 17-222 (270)
322 2z62_A TOLL-like receptor 4, v 99.9 2.2E-26 7.6E-31 233.7 20.1 223 73-300 12-239 (276)
323 3rfs_A Internalin B, repeat mo 99.9 2E-26 7E-31 233.2 14.9 208 64-283 37-244 (272)
324 1p9a_G Platelet glycoprotein I 99.9 9.8E-26 3.3E-30 230.0 20.0 207 113-326 6-212 (290)
325 2o6q_A Variable lymphocyte rec 99.9 2.2E-25 7.4E-30 225.5 21.4 182 118-299 38-219 (270)
326 3rfs_A Internalin B, repeat mo 99.9 8.4E-26 2.9E-30 228.7 15.8 221 95-328 21-241 (272)
327 1p9a_G Platelet glycoprotein I 99.9 8.8E-25 3E-29 222.9 20.3 203 64-298 6-208 (290)
328 3en9_A Glycoprotease, O-sialog 99.9 2.9E-26 1E-30 253.5 9.1 186 430-631 339-539 (540)
329 2xwt_C Thyrotropin receptor; s 99.9 6E-25 2E-29 218.0 16.1 197 37-248 32-237 (239)
330 2ca6_A RAN GTPase-activating p 99.9 1.1E-27 3.8E-32 255.9 -4.0 253 27-301 23-319 (386)
331 3goz_A Leucine-rich repeat-con 99.9 1.9E-26 6.4E-31 243.8 5.3 259 16-299 2-298 (362)
332 3goz_A Leucine-rich repeat-con 99.9 3.9E-26 1.3E-30 241.4 4.9 253 73-326 3-301 (362)
333 2xwt_C Thyrotropin receptor; s 99.9 1.8E-24 6.3E-29 214.5 15.8 196 118-319 32-236 (239)
334 2ca6_A RAN GTPase-activating p 99.9 9.4E-27 3.2E-31 248.7 -1.5 244 62-326 26-320 (386)
335 4glp_A Monocyte differentiatio 99.9 2.8E-24 9.5E-29 222.1 15.3 223 69-298 65-307 (310)
336 4glp_A Monocyte differentiatio 99.9 1.5E-24 5.2E-29 224.0 12.6 228 36-275 64-308 (310)
337 2ast_B S-phase kinase-associat 99.9 3.2E-25 1.1E-29 232.2 6.0 234 68-307 70-315 (336)
338 2ast_B S-phase kinase-associat 99.9 3.6E-25 1.2E-29 231.8 6.2 253 68-328 47-312 (336)
339 1h6u_A Internalin H; cell adhe 99.9 9.1E-24 3.1E-28 217.6 15.8 192 116-323 40-231 (308)
340 3m19_A Variable lymphocyte rec 99.9 2.9E-23 9.8E-28 207.5 18.4 180 118-324 15-194 (251)
341 1h6u_A Internalin H; cell adhe 99.9 1.5E-23 5.1E-28 216.0 16.7 189 95-299 43-231 (308)
342 3m19_A Variable lymphocyte rec 99.9 4.4E-23 1.5E-27 206.1 18.4 180 93-275 14-193 (251)
343 4ay9_X Follicle-stimulating ho 99.9 1.9E-23 6.5E-28 219.6 15.4 241 15-272 12-257 (350)
344 3ogk_B Coronatine-insensitive 99.9 1.2E-25 4.2E-30 254.5 -3.3 327 9-343 161-524 (592)
345 4ay9_X Follicle-stimulating ho 99.9 5.4E-23 1.8E-27 216.1 15.6 241 72-321 13-258 (350)
346 3ogk_B Coronatine-insensitive 99.9 4.7E-25 1.6E-29 249.7 -5.0 307 6-324 186-528 (592)
347 2o6s_A Variable lymphocyte rec 99.9 9.6E-22 3.3E-26 190.4 17.6 163 117-286 28-190 (208)
348 2o6s_A Variable lymphocyte rec 99.9 1E-21 3.5E-26 190.1 15.3 179 120-308 10-188 (208)
349 1zar_A RIO2 kinase; serine kin 99.9 1.1E-22 3.7E-27 206.0 8.7 148 424-603 87-252 (282)
350 2v70_A SLIT-2, SLIT homolog 2 99.9 1.7E-21 5.8E-26 190.0 12.9 159 168-329 14-173 (220)
351 2v9t_B SLIT homolog 2 protein 99.9 2.2E-21 7.5E-26 189.2 12.9 158 168-328 14-171 (220)
352 3cvr_A Invasion plasmid antige 99.9 5.1E-21 1.7E-25 211.3 16.9 167 117-308 80-253 (571)
353 2p1m_B Transport inhibitor res 99.8 3.7E-23 1.3E-27 234.3 -1.5 305 9-323 102-495 (594)
354 3cvr_A Invasion plasmid antige 99.8 1.4E-20 4.8E-25 207.9 18.7 182 118-327 60-248 (571)
355 2p1m_B Transport inhibitor res 99.8 3.6E-23 1.2E-27 234.3 -2.1 208 114-323 286-520 (594)
356 1h6t_A Internalin B; cell adhe 99.8 3.1E-21 1E-25 196.9 11.8 170 115-298 44-213 (291)
357 2xot_A Amphoterin-induced prot 99.8 8.5E-21 2.9E-25 200.2 13.6 183 120-326 21-206 (361)
358 1m9s_A Internalin B; cell inva 99.8 1.2E-20 3.9E-25 211.0 15.3 191 69-276 22-212 (605)
359 1h6t_A Internalin B; cell adhe 99.8 1.5E-20 5E-25 191.8 14.5 169 94-276 47-215 (291)
360 1m9s_A Internalin B; cell inva 99.8 9.1E-21 3.1E-25 211.8 12.9 190 13-251 22-211 (605)
361 2xot_A Amphoterin-induced prot 99.8 2E-20 6.8E-25 197.3 14.3 176 71-274 21-202 (361)
362 3sb4_A Hypothetical leucine ri 99.8 4E-21 1.4E-25 200.1 7.1 296 2-316 13-328 (329)
363 3e6j_A Variable lymphocyte rec 99.8 9.2E-20 3.1E-24 179.0 16.2 156 167-326 21-176 (229)
364 2v9t_B SLIT homolog 2 protein 99.8 7.6E-20 2.6E-24 178.3 15.3 150 121-273 15-164 (220)
365 2v70_A SLIT-2, SLIT homolog 2 99.8 1.1E-19 3.9E-24 177.0 15.3 151 121-274 15-166 (220)
366 3e6j_A Variable lymphocyte rec 99.8 5.6E-19 1.9E-23 173.3 16.2 133 166-299 41-173 (229)
367 1xeu_A Internalin C; cellular 99.8 1.1E-19 3.6E-24 182.4 11.2 150 113-275 37-186 (263)
368 1dce_A Protein (RAB geranylger 99.8 6.6E-22 2.2E-26 219.8 -5.8 203 33-267 346-566 (567)
369 1xeu_A Internalin C; cellular 99.8 1.1E-19 3.9E-24 182.2 10.6 170 67-252 18-187 (263)
370 1dce_A Protein (RAB geranylger 99.8 9E-22 3.1E-26 218.7 -7.2 218 64-316 345-567 (567)
371 4ezg_A Putative uncharacterize 99.8 4.3E-19 1.5E-23 169.9 12.3 153 114-274 41-194 (197)
372 4ezg_A Putative uncharacterize 99.8 5.7E-19 1.9E-23 169.1 12.1 153 138-298 41-194 (197)
373 4fdw_A Leucine rich hypothetic 99.8 8.5E-18 2.9E-22 178.5 20.7 267 34-322 111-383 (401)
374 4b8c_D Glucose-repressible alc 99.8 2.2E-19 7.6E-24 205.8 9.1 189 123-322 207-404 (727)
375 4b8c_D Glucose-repressible alc 99.8 8.4E-20 2.9E-24 209.3 4.8 187 101-298 209-404 (727)
376 1w8a_A SLIT protein; signaling 99.8 7.8E-19 2.7E-23 167.2 10.7 128 168-298 11-139 (192)
377 4fdw_A Leucine rich hypothetic 99.8 1.6E-17 5.4E-22 176.5 21.2 267 10-298 111-383 (401)
378 3sb4_A Hypothetical leucine ri 99.8 1.2E-18 4.2E-23 181.2 11.6 263 11-292 48-328 (329)
379 1zth_A RIO1 serine protein kin 99.7 1.9E-18 6.5E-23 172.7 9.9 138 428-578 48-219 (258)
380 1w8a_A SLIT protein; signaling 99.7 1.4E-17 4.6E-22 158.6 12.7 133 192-327 11-144 (192)
381 2wfh_A SLIT homolog 2 protein 99.7 1.1E-17 3.6E-22 159.3 10.9 132 193-328 14-145 (193)
382 2ell_A Acidic leucine-rich nuc 99.7 6.4E-17 2.2E-21 150.5 11.5 132 117-250 24-160 (168)
383 2ell_A Acidic leucine-rich nuc 99.7 6.5E-17 2.2E-21 150.4 11.2 132 141-274 24-160 (168)
384 4fs7_A Uncharacterized protein 99.7 1.7E-15 5.8E-20 161.6 19.9 291 6-319 65-376 (394)
385 2o6r_A Variable lymphocyte rec 99.7 3.5E-16 1.2E-20 146.8 12.9 114 213-326 28-141 (177)
386 2je0_A Acidic leucine-rich nuc 99.7 9.9E-17 3.4E-21 145.9 8.6 83 118-202 18-101 (149)
387 2je0_A Acidic leucine-rich nuc 99.7 1.7E-16 6E-21 144.3 9.6 128 93-222 17-149 (149)
388 2wfh_A SLIT homolog 2 protein 99.7 5.8E-16 2E-20 147.2 13.2 128 168-299 13-140 (193)
389 2o6r_A Variable lymphocyte rec 99.6 1.5E-15 5.2E-20 142.5 14.0 129 120-251 10-138 (177)
390 4gyi_A RIO2 kinase; protein ki 99.6 1.4E-16 4.9E-21 164.7 4.8 136 428-578 96-265 (397)
391 1a9n_A U2A', U2A'; complex (nu 99.6 1.5E-15 5.1E-20 142.3 9.7 131 113-249 15-152 (176)
392 1a9n_A U2A', U2A'; complex (nu 99.6 1.3E-15 4.6E-20 142.6 8.7 109 137-250 15-126 (176)
393 4fs7_A Uncharacterized protein 99.6 3.8E-14 1.3E-18 151.1 20.7 296 2-314 83-393 (394)
394 1ds9_A Outer arm dynein; leuci 99.6 1.2E-17 4E-22 160.1 -6.1 133 184-323 43-186 (198)
395 1ds9_A Outer arm dynein; leuci 99.6 3.4E-17 1.2E-21 156.8 -5.2 132 160-298 43-185 (198)
396 4gt6_A Cell surface protein; l 99.6 9.1E-14 3.1E-18 148.2 20.7 296 7-322 58-370 (394)
397 3g39_A Variable lymphocyte rec 99.5 3.1E-14 1.1E-18 132.3 11.0 109 215-326 11-119 (170)
398 2r9u_A Variable lymphocyte rec 99.5 7.8E-14 2.7E-18 130.0 11.1 108 216-326 15-122 (174)
399 4gt6_A Cell surface protein; l 99.5 2.7E-12 9.2E-17 136.7 23.5 300 23-343 50-368 (394)
400 3g39_A Variable lymphocyte rec 99.5 2.1E-13 7.2E-18 126.6 11.7 87 165-251 30-116 (170)
401 3un9_A NLR family member X1; l 99.5 1.7E-15 5.8E-20 159.2 -3.1 183 68-250 72-283 (372)
402 3un9_A NLR family member X1; l 99.4 1.3E-15 4.6E-20 160.0 -5.3 134 117-250 72-224 (372)
403 2r9u_A Variable lymphocyte rec 99.4 3.7E-13 1.3E-17 125.3 11.7 86 165-250 33-118 (174)
404 4h09_A Hypothetical leucine ri 99.4 5E-11 1.7E-15 126.2 22.9 290 8-319 42-343 (379)
405 2ifg_A High affinity nerve gro 99.3 2.5E-12 8.4E-17 134.6 9.6 103 193-298 12-116 (347)
406 4h09_A Hypothetical leucine ri 99.3 1.8E-10 6.3E-15 121.9 22.9 131 159-293 211-341 (379)
407 2ifg_A High affinity nerve gro 99.3 4.5E-12 1.6E-16 132.6 8.6 103 169-274 12-116 (347)
408 3tm0_A Aminoglycoside 3'-phosp 99.2 2.6E-11 8.7E-16 121.4 10.4 148 422-576 9-212 (263)
409 1nd4_A Aminoglycoside 3'-phosp 99.1 1.4E-10 4.7E-15 115.9 7.8 139 427-577 20-214 (264)
410 2ra8_A Uncharacterized protein 99.1 5.6E-11 1.9E-15 123.6 4.0 154 161-320 168-341 (362)
411 2ra8_A Uncharacterized protein 99.1 6.4E-11 2.2E-15 123.2 4.2 57 113-173 168-227 (362)
412 3dxp_A Putative acyl-COA dehyd 98.9 3E-09 1E-13 111.6 9.6 143 431-577 42-248 (359)
413 3sg8_A APH(2'')-ID; antibiotic 98.8 2.4E-09 8.1E-14 109.5 4.5 188 432-630 25-287 (304)
414 1io0_A Tropomodulin; LRR prote 98.7 1.3E-09 4.5E-14 102.3 -1.1 87 116-202 64-164 (185)
415 1io0_A Tropomodulin; LRR prote 98.7 3.8E-09 1.3E-13 99.1 0.9 92 111-202 30-136 (185)
416 3r70_A Aminoglycoside phosphot 98.6 5.1E-07 1.7E-11 92.7 13.7 137 428-577 38-237 (320)
417 3rw6_A Nuclear RNA export fact 98.5 1.9E-08 6.5E-13 99.0 -0.3 78 236-315 169-257 (267)
418 3rw6_A Nuclear RNA export fact 98.4 3.3E-08 1.1E-12 97.3 1.1 79 187-267 168-257 (267)
419 3tdw_A Gentamicin resistance p 98.4 3.3E-06 1.1E-10 85.9 13.6 137 432-577 24-224 (306)
420 4gkh_A Aminoglycoside 3'-phosp 98.4 2.7E-06 9.1E-11 85.1 12.7 136 434-577 31-223 (272)
421 3d1u_A Putative fructosamine-3 98.3 2.1E-06 7E-11 86.4 10.6 77 430-510 18-97 (288)
422 3e4g_A ATP synthase subunit S, 98.2 5E-07 1.7E-11 82.3 3.2 84 117-200 61-150 (176)
423 3ovc_A Hygromycin-B 4-O-kinase 98.2 4E-06 1.4E-10 87.4 10.3 142 431-578 45-244 (362)
424 3e4g_A ATP synthase subunit S, 98.1 8E-07 2.8E-11 80.9 2.3 83 166-248 62-150 (176)
425 3ats_A Putative uncharacterize 98.0 5.2E-06 1.8E-10 86.6 7.0 80 432-511 25-121 (357)
426 1pgv_A TMD-1, tropomodulin TMD 97.9 1.9E-06 6.4E-11 80.1 1.0 54 32-89 37-91 (197)
427 1pgv_A TMD-1, tropomodulin TMD 97.8 7.7E-06 2.6E-10 75.9 2.8 62 113-174 66-135 (197)
428 2q83_A YTAA protein; 2635576, 97.8 0.00015 5.2E-09 74.9 12.3 139 433-576 38-251 (346)
429 2olc_A MTR kinase, methylthior 97.7 6.4E-05 2.2E-09 79.5 9.1 75 432-508 35-120 (397)
430 3f7w_A Putative fructosamine-3 97.6 0.00016 5.5E-09 72.6 9.2 78 428-509 16-96 (288)
431 3jr1_A Putative fructosamine-3 97.6 0.00051 1.8E-08 69.4 12.3 137 432-573 41-232 (312)
432 3rfe_A Platelet glycoprotein I 97.3 0.00024 8.3E-09 61.5 5.2 62 265-328 12-74 (130)
433 2pyw_A Uncharacterized protein 97.3 0.00079 2.7E-08 71.6 10.3 80 546-627 231-313 (420)
434 3csv_A Aminoglycoside phosphot 97.1 0.0017 5.7E-08 66.7 10.4 140 433-577 24-217 (333)
435 3dxq_A Choline/ethanolamine ki 97.1 0.0014 4.8E-08 66.1 9.0 71 432-510 23-95 (301)
436 2ppq_A HSK, HK, homoserine kin 96.9 0.0034 1.1E-07 64.0 10.7 155 419-576 9-216 (322)
437 3rfe_A Platelet glycoprotein I 96.9 0.0016 5.4E-08 56.3 6.5 57 15-81 11-68 (130)
438 2yle_A Protein spire homolog 1 96.8 0.0068 2.3E-07 56.4 10.1 102 509-629 34-135 (229)
439 3feg_A Choline/ethanolamine ki 96.8 0.0045 1.6E-07 64.2 10.1 140 433-577 56-254 (379)
440 1nw1_A Choline kinase (49.2 KD 96.6 0.0023 8E-08 68.0 6.8 71 432-508 78-157 (429)
441 1zyl_A Hypothetical protein YI 96.6 0.0064 2.2E-07 62.1 9.9 141 433-577 32-223 (328)
442 3c5i_A Choline kinase; choline 96.2 0.0031 1.1E-07 65.7 4.6 73 432-509 38-120 (369)
443 2qg7_A Ethanolamine kinase PV0 96.1 0.0071 2.4E-07 64.5 6.7 73 432-509 113-187 (458)
444 3i1a_A Spectinomycin phosphotr 95.9 0.02 6.7E-07 58.7 9.1 32 546-577 205-236 (339)
445 3f2s_A CK, chetk-alpha, cholin 95.8 0.025 8.4E-07 59.0 9.0 140 433-576 58-279 (401)
446 3mes_A Choline kinase; malaria 93.8 0.14 4.8E-06 53.8 8.5 140 432-577 75-291 (424)
447 3g15_A CK, chetk-alpha, cholin 91.7 0.35 1.2E-05 50.6 8.0 29 549-577 246-280 (401)
448 2ks1_B Epidermal growth factor 76.5 2.7 9.3E-05 27.7 3.4 18 379-396 21-38 (44)
449 4ann_A ESSB; membrane protein, 76.4 3.4 0.00011 38.3 5.4 119 481-635 43-162 (215)
450 3cxl_A N-chimerin; SH2, RHO-GA 76.3 0.31 1.1E-05 51.9 -1.8 59 431-492 146-213 (463)
451 4ano_A ESSB; membrane protein, 74.9 9.6 0.00033 35.4 8.1 115 481-632 48-164 (219)
452 2lz0_A Uncharacterized protein 71.0 9.4 0.00032 30.5 6.3 42 132-174 11-52 (100)
453 2l2t_A Receptor tyrosine-prote 66.7 4.3 0.00015 26.7 2.6 20 379-398 20-39 (44)
454 2lz0_A Uncharacterized protein 62.4 18 0.00062 28.8 6.3 47 152-199 7-53 (100)
455 3ls8_A Phosphatidylinositol 3- 44.9 1.5E+02 0.0053 32.0 11.8 82 486-576 402-501 (614)
456 2jwa_A Receptor tyrosine-prote 44.8 12 0.00042 24.6 2.0 20 379-398 21-40 (44)
457 2x6h_A GH13170P, VPS34, phosph 41.7 3.1E+02 0.011 30.2 13.9 44 525-576 530-575 (696)
458 1cja_A Protein (actin-fragmin 25.8 2.3E+02 0.0078 28.0 8.5 140 429-577 71-237 (342)
459 2k9y_A Ephrin type-A receptor 22.1 59 0.002 20.7 2.4 6 392-397 34-39 (41)
460 2klu_A T-cell surface glycopro 21.4 68 0.0023 22.9 2.7 28 375-402 13-41 (70)
No 1
>3omv_A RAF proto-oncogene serine/threonine-protein kinas; serine/threonine-protein kinase, transferase; HET: SM5; 4.00A {Homo sapiens}
Probab=100.00 E-value=2.4e-54 Score=439.59 Aligned_cols=263 Identities=27% Similarity=0.439 Sum_probs=208.3
Q ss_pred ccCCccccccccccEEEEEEEecCCCeEEEEEechhh--HHHHHHHHHHHHHHHhcCCCceeeEeeeeecCCeeEEEEEc
Q 005040 427 DEFNECNLLGTGGFGSVYKGTLSDGTNVAIKIFNLQL--ERAFRSFDSECEILRNVRHRNLLKILGSCSNLDFKALVLEF 504 (717)
Q Consensus 427 ~~~~~~~~lg~G~~g~V~~~~~~~~~~vavK~~~~~~--~~~~~~~~~e~~~l~~l~hpniv~~~~~~~~~~~~~lv~e~ 504 (717)
+++++.+.||+|+||+||+|++++ .||||+++... .+..+.|.+|++++++++|||||+++|++.+ +..++||||
T Consensus 36 ~~l~l~~~iG~G~fG~Vy~~~~~~--~vAvK~~~~~~~~~~~~~~f~~E~~il~~l~HpNIV~l~g~~~~-~~~~iVmEy 112 (307)
T 3omv_A 36 SEVMLSTRIGSGSFGTVYKGKWHG--DVAVKILKVVDPTPEQFQAFRNEVAVLRKTRHVNILLFMGYMTK-DNLAIVTQW 112 (307)
T ss_dssp TSCCEEEECCCCSSSEEEEEESSS--EEEEEECCCSSCCHHHHHHHHHHHHHHTTCCCTTBCCEEEEECS-SSCEEEEEC
T ss_pred HHeEEeeEEeeCCCcEEEEEEECC--cEEEEEEEecCCCHHHHHHHHHHHHHHHhCCCCCEeeEEEEEEC-CeEEEEEEc
Confidence 577888999999999999999753 59999986432 4456789999999999999999999998865 568999999
Q ss_pred cCCCCHHHHHhhCCCCCCHHHHHHHHHHHHHHHHHHhhcCCCCCeEecCCCCCCeeeCCCCcEEEeeeccccccCCCCCc
Q 005040 505 MPNGSLEKWLYSHNYFLDILQRLNIMIDVGSALEYLHHCHSSAPIIHCDLKPTNILLDENMVAHVSDFGISKLLGEGEDS 584 (717)
Q Consensus 505 ~~~g~L~~~l~~~~~~~~~~~~~~i~~~i~~~l~~LH~~~~~~~ivH~dlk~~Nill~~~~~~kl~Dfgl~~~~~~~~~~ 584 (717)
|++|+|.++++.....+++..+..|+.|||+||+||| +++||||||||+|||+++++.+||+|||+|+........
T Consensus 113 ~~gGsL~~~l~~~~~~l~~~~~~~i~~qia~gL~yLH----~~~IiHRDlKp~NILl~~~~~~Ki~DFGla~~~~~~~~~ 188 (307)
T 3omv_A 113 CEGSSLYKHLHVQETKFQMFQLIDIARQTAQGMDYLH----AKNIIHRDMKSNNIFLHEGLTVKIGDFGLATVKSRWSGS 188 (307)
T ss_dssp CSSCBHHHHHHTSCCCCCHHHHHHHHHHHHHHHHHHH----HTTCBCSCCCSSSEEEETTEEEEECCCSSCBC-------
T ss_pred CCCCCHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHHH----HCCccCCccCHHHEEECCCCcEEEeeccCceecccCCcc
Confidence 9999999999887777999999999999999999999 678999999999999999999999999999876544333
Q ss_pred eeeeccccCccccCCCccC---CCCcCcccchhhHHHHHHHHHhCCCCCCccccCcchHHHHHHhhCCCchhhhccccch
Q 005040 585 VIQTMTMATIGYMAPEYGS---EGIVSTKCDVYSYGVLLMETFTEKKPTDEMFTGEMSLRRWVKESLPHRLTEVVDANLV 661 (717)
Q Consensus 585 ~~~~~~~~t~~y~aPE~~~---~~~~~~~~Dvws~G~il~el~tg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 661 (717)
......+||+.|||||++. .+.|+.++|||||||++|||+||+.||.+.... ......+..... .+.+.
T Consensus 189 ~~~~~~~GT~~ymAPE~l~~~~~~~y~~ksDVwS~Gvvl~Elltg~~Pf~~~~~~-~~~~~~~~~~~~-------~p~~~ 260 (307)
T 3omv_A 189 QQVEQPTGSVLWMAPEVIRMQDNNPFSFQSDVYSYGIVLYELMTGELPYSHINNR-DQIIFMVGRGYA-------SPDLS 260 (307)
T ss_dssp -----CCCCTTSCCHHHHHCCSSCCCCHHHHHHHHHHHHHHHHHSSCTTTTCCCH-HHHHHHHHTTCC-------CCCST
T ss_pred eeecccccCCCccCHHHhhccCCCCCCcHHHhHhHHHHHHHHHHCCCCCCCCChH-HHHHHHHhcCCC-------CCCcc
Confidence 3344568999999999875 346899999999999999999999999763221 112222221111 01110
Q ss_pred hhhhhhhhhHHHHHHHHHHHhhccCCCCCCCCCHHHHHHHHHHhHHhhc
Q 005040 662 REEQAFSDKMDCLFSIMDLALDCCMDTPHKRIHMTDAAAKLRKIKAKFL 710 (717)
Q Consensus 662 ~~~~~~~~~~~~~~~l~~li~~cl~~~P~~Rpt~~ev~~~L~~~~~~~~ 710 (717)
....+++.++.+++.+||+.||++||||+||++.|+.++..++
T Consensus 261 ------~~~~~~~~~l~~li~~cl~~dP~~RPs~~ei~~~Le~l~~~lp 303 (307)
T 3omv_A 261 ------KLYKNCPKAMKRLVADCVKKVKEERPLFPQILSSIELLQHSLP 303 (307)
T ss_dssp ------TSCTTSCHHHHHHHHHHTCSSSTTSCCHHHHHHHHHHHHTTCC
T ss_pred ------cccccchHHHHHHHHHHcCCCHhHCcCHHHHHHHHHHHhccCC
Confidence 0112456778999999999999999999999999998876654
No 2
>4asz_A BDNF/NT-3 growth factors receptor; transferase, TRKA, TRKB; 1.70A {Homo sapiens} PDB: 4at3_A* 4at4_A* 4at5_A* 3v5q_A*
Probab=100.00 E-value=1.6e-54 Score=441.30 Aligned_cols=261 Identities=28% Similarity=0.432 Sum_probs=217.5
Q ss_pred ccCCccccccccccEEEEEEEec------CCCeEEEEEechhhHHHHHHHHHHHHHHHhcCCCceeeEeeeeecCCeeEE
Q 005040 427 DEFNECNLLGTGGFGSVYKGTLS------DGTNVAIKIFNLQLERAFRSFDSECEILRNVRHRNLLKILGSCSNLDFKAL 500 (717)
Q Consensus 427 ~~~~~~~~lg~G~~g~V~~~~~~------~~~~vavK~~~~~~~~~~~~~~~e~~~l~~l~hpniv~~~~~~~~~~~~~l 500 (717)
++|.+.+.||+|+||.||+|++. +++.||||+++.......+.|.+|++++++++|||||+++|+|.+.+..|+
T Consensus 13 ~~~~l~~~lG~G~fG~Vy~a~~~~~~~~~~~~~vAvK~l~~~~~~~~~~f~~E~~il~~l~HpnIV~l~g~~~~~~~~~l 92 (299)
T 4asz_A 13 HNIVLKRELGEGAFGKVFLAECYNLCPEQDKILVAVKTLKDASDNARKDFHREAELLTNLQHEHIVKFYGVCVEGDPLIM 92 (299)
T ss_dssp GGEEEEEEEEC--CCCEEEEEECSCC----CEEEEEEEECSCCHHHHHHHHHHHHHHTTCCCTTBCCEEEEECSSSSEEE
T ss_pred HHeEEeeEEeeCCCcEEEEEEECCcccCCCCEEEEEEEeCCCChHHHHHHHHHHHHHHhCCCCCCccEEEEEeeCCEEEE
Confidence 57888899999999999999863 477899999987666667889999999999999999999999999999999
Q ss_pred EEEccCCCCHHHHHhhC------------CCCCCHHHHHHHHHHHHHHHHHHhhcCCCCCeEecCCCCCCeeeCCCCcEE
Q 005040 501 VLEFMPNGSLEKWLYSH------------NYFLDILQRLNIMIDVGSALEYLHHCHSSAPIIHCDLKPTNILLDENMVAH 568 (717)
Q Consensus 501 v~e~~~~g~L~~~l~~~------------~~~~~~~~~~~i~~~i~~~l~~LH~~~~~~~ivH~dlk~~Nill~~~~~~k 568 (717)
|||||++|+|.++++.. ...++|.++..++.||++||+||| +++|+||||||+|||+++++.+|
T Consensus 93 V~Ey~~~G~L~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~i~~qia~gl~yLH----~~~iiHRDlKp~NILl~~~~~~K 168 (299)
T 4asz_A 93 VFEYMKHGDLNKFLRAHGPDAVLMAEGNPPTELTQSQMLHIAQQIAAGMVYLA----SQHFVHRDLATRNCLVGENLLVK 168 (299)
T ss_dssp EEECCTTCBHHHHHHHTSHHHHHC----CCCCCCHHHHHHHHHHHHHHHHHHH----HTTCCCSCCSGGGEEECGGGCEE
T ss_pred EEEcCCCCcHHHHHHhcCcccccccccCCCCCCCHHHHHHHHHHHHHHHHHHH----hCCcccCccCHhhEEECCCCcEE
Confidence 99999999999999854 246899999999999999999999 67899999999999999999999
Q ss_pred EeeeccccccCCCCCceeeeccccCccccCCCccCCCCcCcccchhhHHHHHHHHHh-CCCCCCccccCcchHHHHHHhh
Q 005040 569 VSDFGISKLLGEGEDSVIQTMTMATIGYMAPEYGSEGIVSTKCDVYSYGVLLMETFT-EKKPTDEMFTGEMSLRRWVKES 647 (717)
Q Consensus 569 l~Dfgl~~~~~~~~~~~~~~~~~~t~~y~aPE~~~~~~~~~~~Dvws~G~il~el~t-g~~p~~~~~~~~~~~~~~~~~~ 647 (717)
|+|||+|+...............||+.|||||++.++.|+.++|||||||++|||+| |+.||.+.... .+...+...
T Consensus 169 i~DFGla~~~~~~~~~~~~~~~~gt~~ymAPE~~~~~~~~~k~DVwS~Gvvl~Ellt~G~~Pf~~~~~~--~~~~~i~~~ 246 (299)
T 4asz_A 169 IGDFGMSRDVYSTDYYRVGGHTMLPIRWMPPESIMYRKFTTESDVWSLGVVLWEIFTYGKQPWYQLSNN--EVIECITQG 246 (299)
T ss_dssp ECCCSCHHHHTGGGCEEETTTEEECGGGCCHHHHHHCCCCHHHHHHHHHHHHHHHHTTTCCTTTTSCHH--HHHHHHHHT
T ss_pred ECCcccceecCCCCceeecCceecChhhcCHHHHcCCCCCchhhHHHHHHHHHHHHcCCCCCCCCCCHH--HHHHHHHcC
Confidence 999999987654443333344568999999999999999999999999999999999 89999764321 222222211
Q ss_pred CCCchhhhccccchhhhhhhhhhHHHHHHHHHHHhhccCCCCCCCCCHHHHHHHHHHhHHhhc
Q 005040 648 LPHRLTEVVDANLVREEQAFSDKMDCLFSIMDLALDCCMDTPHKRIHMTDAAAKLRKIKAKFL 710 (717)
Q Consensus 648 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~cl~~~P~~Rpt~~ev~~~L~~~~~~~~ 710 (717)
.. .+.+..++.++.+++.+||+.||++||||+|+.+.|+++.+..+
T Consensus 247 ~~-----------------~~~p~~~~~~~~~li~~cl~~dP~~RPs~~~i~~~L~~~~~~~p 292 (299)
T 4asz_A 247 RV-----------------LQRPRTCPQEVYELMLGCWQREPHMRKNIKGIHTLLQNLAKASP 292 (299)
T ss_dssp CC-----------------CCCCTTCCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHHHHSC
T ss_pred CC-----------------CCCCccchHHHHHHHHHHcCCChhHCcCHHHHHHHHHHHHhcCC
Confidence 00 01122456778999999999999999999999999999876544
No 3
>4aoj_A High affinity nerve growth factor receptor; transferase, inhibitor; HET: V4Z; 2.75A {Homo sapiens}
Probab=100.00 E-value=9.8e-54 Score=441.58 Aligned_cols=259 Identities=26% Similarity=0.421 Sum_probs=209.2
Q ss_pred ccCCccccccccccEEEEEEEec------CCCeEEEEEechhhHHHHHHHHHHHHHHHhcCCCceeeEeeeeecCCeeEE
Q 005040 427 DEFNECNLLGTGGFGSVYKGTLS------DGTNVAIKIFNLQLERAFRSFDSECEILRNVRHRNLLKILGSCSNLDFKAL 500 (717)
Q Consensus 427 ~~~~~~~~lg~G~~g~V~~~~~~------~~~~vavK~~~~~~~~~~~~~~~e~~~l~~l~hpniv~~~~~~~~~~~~~l 500 (717)
++|.+.+.||+|+||.||+|+++ +++.||||+++.......+.|.+|+++|++++|||||+++|+|.+.+..|+
T Consensus 41 ~d~~l~~~LG~G~fG~Vy~a~~~~~~~~~~~~~vAvK~l~~~~~~~~~~f~~E~~il~~l~HpnIV~l~g~~~~~~~~~l 120 (329)
T 4aoj_A 41 RDIVLKWELGEGAFGKVFLAECHNLLPEQDKMLVAVKALKEASESARQDFQREAELLTMLQHQHIVRFFGVCTEGRPLLM 120 (329)
T ss_dssp GGEEEEEEEEECSSEEEEEEEESSSCC---CEEEEEEEESCCSHHHHHHHHHHHHHHTTCCCTTBCCEEEEECSSSSEEE
T ss_pred HHeEEEEEEccCCCcEEEEEEECCcccCCCCeEEEEEEECcCCHHHHHHHHHHHHHHHhCCCCCCCcEEEEEEECCEEEE
Confidence 56777889999999999999864 478899999987666667889999999999999999999999999999999
Q ss_pred EEEccCCCCHHHHHhhCC--------------CCCCHHHHHHHHHHHHHHHHHHhhcCCCCCeEecCCCCCCeeeCCCCc
Q 005040 501 VLEFMPNGSLEKWLYSHN--------------YFLDILQRLNIMIDVGSALEYLHHCHSSAPIIHCDLKPTNILLDENMV 566 (717)
Q Consensus 501 v~e~~~~g~L~~~l~~~~--------------~~~~~~~~~~i~~~i~~~l~~LH~~~~~~~ivH~dlk~~Nill~~~~~ 566 (717)
|||||++|+|.++++... ..++|.++..++.||++||+||| +++|+||||||+|||+++++.
T Consensus 121 V~Ey~~~G~L~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~~qia~gl~yLH----~~~iiHRDLKp~NILl~~~~~ 196 (329)
T 4aoj_A 121 VFEYMRHGDLNRFLRSHGPDAKLLAGGEDVAPGPLGLGQLLAVASQVAAGMVYLA----GLHFVHRDLATRNCLVGQGLV 196 (329)
T ss_dssp EEECCTTCBHHHHHHTSSCC-----------CCSCCHHHHHHHHHHHHHHHHHHH----HTTCCCSCCCGGGEEEETTTE
T ss_pred EEEcCCCCcHHHHHHhcCcccccccccccccCCCCCHHHHHHHHHHHHHHHHHHh----cCCeecccccHhhEEECCCCc
Confidence 999999999999998542 35899999999999999999999 678999999999999999999
Q ss_pred EEEeeeccccccCCCCCceeeeccccCccccCCCccCCCCcCcccchhhHHHHHHHHHh-CCCCCCccccCcchHHHHHH
Q 005040 567 AHVSDFGISKLLGEGEDSVIQTMTMATIGYMAPEYGSEGIVSTKCDVYSYGVLLMETFT-EKKPTDEMFTGEMSLRRWVK 645 (717)
Q Consensus 567 ~kl~Dfgl~~~~~~~~~~~~~~~~~~t~~y~aPE~~~~~~~~~~~Dvws~G~il~el~t-g~~p~~~~~~~~~~~~~~~~ 645 (717)
+||+|||+++...............||+.|||||++.+..|+.++|||||||++|||+| |+.||.+.... .....+.
T Consensus 197 ~Ki~DFGla~~~~~~~~~~~~~~~~gt~~ymAPE~~~~~~~~~~sDvwS~Gvvl~Ellt~G~~Pf~~~~~~--~~~~~i~ 274 (329)
T 4aoj_A 197 VKIGDFGMSRDIYSTDYYRVGGRTMLPIRWMPPESILYRKFTTESDVWSFGVVLWEIFTYGKQPWYQLSNT--EAIDCIT 274 (329)
T ss_dssp EEECCCC----------------CCCCGGGCCHHHHTTCCCCHHHHHHHHHHHHHHHHTTSCCTTCSSCHH--HHHHHHH
T ss_pred EEEcccccceeccCCCcceecCcccccccccChhhhcCCCCCccccccchHHHHHHHHcCCCCCCCCCCHH--HHHHHHH
Confidence 99999999987755444334445679999999999999999999999999999999999 89999764221 1222222
Q ss_pred hhCCCchhhhccccchhhhhhhhhhHHHHHHHHHHHhhccCCCCCCCCCHHHHHHHHHHhHHh
Q 005040 646 ESLPHRLTEVVDANLVREEQAFSDKMDCLFSIMDLALDCCMDTPHKRIHMTDAAAKLRKIKAK 708 (717)
Q Consensus 646 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~cl~~~P~~Rpt~~ev~~~L~~~~~~ 708 (717)
.... .+.+..++.++.+++.+||+.||++||||+||++.|+++.+.
T Consensus 275 ~g~~-----------------~~~p~~~~~~~~~li~~cl~~dP~~RPs~~ei~~~L~~l~~~ 320 (329)
T 4aoj_A 275 QGRE-----------------LERPRACPPEVYAIMRGCWQREPQQRHSIKDVHARLQALAQA 320 (329)
T ss_dssp HTCC-----------------CCCCTTCCHHHHHHHHHHCCSSTTTSCCHHHHHHHHHHHHHS
T ss_pred cCCC-----------------CCCcccccHHHHHHHHHHcCcChhHCcCHHHHHHHHHHHhhC
Confidence 1110 011224567789999999999999999999999999998664
No 4
>4gt4_A Tyrosine-protein kinase transmembrane receptor RO; ATP binding, phosphorylation, transferase; 2.41A {Homo sapiens} PDB: 3zzw_A
Probab=100.00 E-value=1.2e-53 Score=436.70 Aligned_cols=256 Identities=23% Similarity=0.393 Sum_probs=211.5
Q ss_pred ccCCccccccccccEEEEEEEec------CCCeEEEEEechhh-HHHHHHHHHHHHHHHhcCCCceeeEeeeeecCCeeE
Q 005040 427 DEFNECNLLGTGGFGSVYKGTLS------DGTNVAIKIFNLQL-ERAFRSFDSECEILRNVRHRNLLKILGSCSNLDFKA 499 (717)
Q Consensus 427 ~~~~~~~~lg~G~~g~V~~~~~~------~~~~vavK~~~~~~-~~~~~~~~~e~~~l~~l~hpniv~~~~~~~~~~~~~ 499 (717)
.+++..+.||+|+||+||+|.+. +++.||||+++... ....+.|.+|+.++++++|||||+++|+|.+.+..+
T Consensus 26 ~~~~~~~~lG~G~fG~Vykg~~~~~~~~~~~~~VAvK~l~~~~~~~~~~~f~~E~~il~~l~HpNIV~l~g~~~~~~~~~ 105 (308)
T 4gt4_A 26 SAVRFMEELGEDRFGKVYKGHLFGPAPGEQTQAVAIKTLKDKAEGPLREEFRHEAMLRARLQHPNVVCLLGVVTKDQPLS 105 (308)
T ss_dssp GGEEEEEEEEECSSCEEEEEEEC-------CEEEEEEECCC-CCC-CHHHHHHHHHHHHHCCCTTBCCEEEEECSSSSCE
T ss_pred HHCeEeeEeccCCCcEEEEEEEcCCccCCCCeEEEEEEECcccChHHHHHHHHHHHHHHhCCCCCCCCcceEEEECCEEE
Confidence 45666789999999999999862 46789999997543 334567999999999999999999999999999999
Q ss_pred EEEEccCCCCHHHHHhhCC---------------CCCCHHHHHHHHHHHHHHHHHHhhcCCCCCeEecCCCCCCeeeCCC
Q 005040 500 LVLEFMPNGSLEKWLYSHN---------------YFLDILQRLNIMIDVGSALEYLHHCHSSAPIIHCDLKPTNILLDEN 564 (717)
Q Consensus 500 lv~e~~~~g~L~~~l~~~~---------------~~~~~~~~~~i~~~i~~~l~~LH~~~~~~~ivH~dlk~~Nill~~~ 564 (717)
+|||||++|+|.+++.... ..++|..+..++.|||+||+||| +++||||||||+|||++++
T Consensus 106 lV~Ey~~~G~L~~~L~~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~~qia~gl~yLH----~~~iiHRDLK~~NILl~~~ 181 (308)
T 4gt4_A 106 MIFSYCSHGDLHEFLVMRSPHSDVGSTDDDRTVKSALEPPDFVHLVAQIAAGMEYLS----SHHVVHKDLATRNVLVYDK 181 (308)
T ss_dssp EEEECCSSCBHHHHHHTTCSSCCCC-----CCEECCCCHHHHHHHHHHHHHHHHHHH----HTTCCCSCCSGGGEEECGG
T ss_pred EEEEcCCCCcHHHHHHhhCccccccccccccccccCCCHHHHHHHHHHHHHHHHHHH----hCCCCCCCccccceEECCC
Confidence 9999999999999997432 35899999999999999999999 6789999999999999999
Q ss_pred CcEEEeeeccccccCCCCCceeeeccccCccccCCCccCCCCcCcccchhhHHHHHHHHHh-CCCCCCccccCcchHHHH
Q 005040 565 MVAHVSDFGISKLLGEGEDSVIQTMTMATIGYMAPEYGSEGIVSTKCDVYSYGVLLMETFT-EKKPTDEMFTGEMSLRRW 643 (717)
Q Consensus 565 ~~~kl~Dfgl~~~~~~~~~~~~~~~~~~t~~y~aPE~~~~~~~~~~~Dvws~G~il~el~t-g~~p~~~~~~~~~~~~~~ 643 (717)
+.+||+|||+++...............||+.|||||++.++.|+.++|||||||++|||+| |+.||.+... ..+...
T Consensus 182 ~~~Ki~DFGlar~~~~~~~~~~~~~~~gt~~ymAPE~l~~~~~s~ksDVwSfGvvl~El~t~g~~Pf~~~~~--~~~~~~ 259 (308)
T 4gt4_A 182 LNVKISDLGLFREVYAADYYKLLGNSLLPIRWMAPEAIMYGKFSIDSDIWSYGVVLWEVFSYGLQPYCGYSN--QDVVEM 259 (308)
T ss_dssp GCEEECCSCCBCGGGGGGCBCSSSSSCBCGGGCCHHHHHHCCCCHHHHHHHHHHHHHHHHTTTCCTTTTCCH--HHHHHH
T ss_pred CCEEECCcccceeccCCCceeEecccccCCcccCHHHHhCCCCCccchhhhHHHHHHHHHhCCCCCCCCCCH--HHHHHH
Confidence 9999999999987654433333445679999999999999999999999999999999999 8999976432 222222
Q ss_pred HHhhCCCchhhhccccchhhhhhhhhhHHHHHHHHHHHhhccCCCCCCCCCHHHHHHHHHHh
Q 005040 644 VKESLPHRLTEVVDANLVREEQAFSDKMDCLFSIMDLALDCCMDTPHKRIHMTDAAAKLRKI 705 (717)
Q Consensus 644 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~cl~~~P~~Rpt~~ev~~~L~~~ 705 (717)
+..... .+.+.+++.++.+++.+||+.||++||||+||++.|+++
T Consensus 260 i~~~~~-----------------~~~p~~~~~~~~~li~~C~~~dP~~RPs~~ei~~~L~a~ 304 (308)
T 4gt4_A 260 IRNRQV-----------------LPCPDDCPAWVYALMIECWNEFPSRRPRFKDIHSRLRAW 304 (308)
T ss_dssp HHTTCC-----------------CCCCTTCCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHTS
T ss_pred HHcCCC-----------------CCCcccchHHHHHHHHHHcCCChhHCcCHHHHHHHHHhc
Confidence 221100 011235667789999999999999999999999999865
No 5
>4fih_A Serine/threonine-protein kinase PAK 4; kinase domain, protein ATP binding, phosphorylation, transferase; HET: SEP; 1.97A {Homo sapiens} PDB: 4fig_A* 4fif_A* 4fii_A* 4fij_A*
Probab=100.00 E-value=8.7e-53 Score=433.22 Aligned_cols=249 Identities=22% Similarity=0.313 Sum_probs=209.9
Q ss_pred ccCCccccccccccEEEEEEEec-CCCeEEEEEechhhHHHHHHHHHHHHHHHhcCCCceeeEeeeeecCCeeEEEEEcc
Q 005040 427 DEFNECNLLGTGGFGSVYKGTLS-DGTNVAIKIFNLQLERAFRSFDSECEILRNVRHRNLLKILGSCSNLDFKALVLEFM 505 (717)
Q Consensus 427 ~~~~~~~~lg~G~~g~V~~~~~~-~~~~vavK~~~~~~~~~~~~~~~e~~~l~~l~hpniv~~~~~~~~~~~~~lv~e~~ 505 (717)
+.|+..+.||+|+||.||+|.++ +|+.||||++........+.+.+|+++|++++|||||++++++.+.+..|+|||||
T Consensus 74 ~~y~~~~~iG~G~fG~V~~a~~~~tg~~vAiK~i~~~~~~~~~~~~~Ei~il~~l~HpnIV~l~~~~~~~~~~~ivmEy~ 153 (346)
T 4fih_A 74 SYLDNFIKIGEGSTGIVCIATVRSSGKLVAVKKMDLRKQQRRELLFNEVVIMRDYQHENVVEMYNSYLVGDELWVVMEFL 153 (346)
T ss_dssp GTEEEEEEEEECSSCEEEEEEETTTCCEEEEEEEEGGGCSSGGGGHHHHHHHHHCCCTTBCCEEEEEEETTEEEEEECCC
T ss_pred HhcEEeEEeecCcCeEEEEEEECCCCCEEEEEEEecCchhHHHHHHHHHHHHHhCCCCCCCcEEEEEEECCEEEEEEeCC
Confidence 56889999999999999999976 79999999997665545566889999999999999999999999999999999999
Q ss_pred CCCCHHHHHhhCCCCCCHHHHHHHHHHHHHHHHHHhhcCCCCCeEecCCCCCCeeeCCCCcEEEeeeccccccCCCCCce
Q 005040 506 PNGSLEKWLYSHNYFLDILQRLNIMIDVGSALEYLHHCHSSAPIIHCDLKPTNILLDENMVAHVSDFGISKLLGEGEDSV 585 (717)
Q Consensus 506 ~~g~L~~~l~~~~~~~~~~~~~~i~~~i~~~l~~LH~~~~~~~ivH~dlk~~Nill~~~~~~kl~Dfgl~~~~~~~~~~~ 585 (717)
+||+|.+++.... +++..+..++.||+.||+||| +++|+||||||+|||++.++.+||+|||+|+.+.....
T Consensus 154 ~gg~L~~~l~~~~--l~e~~~~~~~~qi~~aL~ylH----~~~IiHRDlKp~NILl~~~g~vKl~DFGla~~~~~~~~-- 225 (346)
T 4fih_A 154 EGGALTDIVTHTR--MNEEQIAAVCLAVLQALSVLH----AQGVIHRDIKSDSILLTHDGRVKLSDFGFCAQVSKEVP-- 225 (346)
T ss_dssp TTEEHHHHHHHSC--CCHHHHHHHHHHHHHHHHHHH----HTTEECCCCSGGGEEECTTCCEEECCCTTCEECCSSSC--
T ss_pred CCCcHHHHHHcCC--CCHHHHHHHHHHHHHHHHHHH----HCCcccccCCHHHEEECCCCCEEEecCcCceecCCCCC--
Confidence 9999999998754 899999999999999999999 68899999999999999999999999999987754322
Q ss_pred eeeccccCccccCCCccCCCCcCcccchhhHHHHHHHHHhCCCCCCccccCcchHHHHHHhhCCCchhhhccccchhhhh
Q 005040 586 IQTMTMATIGYMAPEYGSEGIVSTKCDVYSYGVLLMETFTEKKPTDEMFTGEMSLRRWVKESLPHRLTEVVDANLVREEQ 665 (717)
Q Consensus 586 ~~~~~~~t~~y~aPE~~~~~~~~~~~Dvws~G~il~el~tg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 665 (717)
.....+||+.|||||++.+..|+.++||||+||++|||++|+.||.+.. .......+....+..
T Consensus 226 ~~~~~~GTp~YmAPEvl~~~~y~~~~DiWSlGvilyeml~G~~PF~~~~--~~~~~~~i~~~~~~~-------------- 289 (346)
T 4fih_A 226 RRKSLVGTPYWMAPELISRLPYGPEVDIWSLGIMVIEMVDGEPPYFNEP--PLKAMKMIRDNLPPR-------------- 289 (346)
T ss_dssp CBCCCCSCGGGCCHHHHTTCCBCTHHHHHHHHHHHHHHHHSSCTTTTSC--HHHHHHHHHHSSCCC--------------
T ss_pred cccccccCcCcCCHHHHCCCCCCcHHHHHHHHHHHHHHHHCCCCCCCcC--HHHHHHHHHcCCCCC--------------
Confidence 2345689999999999999999999999999999999999999997532 112222222211111
Q ss_pred hhhhhHHHHHHHHHHHhhccCCCCCCCCCHHHHHH
Q 005040 666 AFSDKMDCLFSIMDLALDCCMDTPHKRIHMTDAAA 700 (717)
Q Consensus 666 ~~~~~~~~~~~l~~li~~cl~~~P~~Rpt~~ev~~ 700 (717)
......++.++.+||.+||..||++|||++|+++
T Consensus 290 -~~~~~~~s~~~~dli~~~L~~dP~~R~ta~e~l~ 323 (346)
T 4fih_A 290 -LKNLHKVSPSLKGFLDRLLVRDPAQRATAAELLK 323 (346)
T ss_dssp -CSCGGGSCHHHHHHHHHHSCSSTTTSCCHHHHTT
T ss_pred -CCccccCCHHHHHHHHHHcCCChhHCcCHHHHhc
Confidence 1112234567889999999999999999999876
No 6
>4aw0_A HPDK1, 3-phosphoinositide-dependent protein kinase 1; transferase, allosteric regulation, allosteric site, phosphorylation, AGC protein kinase; HET: SEP ATP MJF; 1.43A {Homo sapiens} PDB: 3hrc_A* 3hrf_A* 4a06_A* 4a07_A* 3rcj_A* 4aw1_A* 3rwq_A* 3sc1_A* 3qd0_A* 2r7b_A* 3ion_A* 3qcq_A* 3qcs_A* 3qcx_A* 3qcy_A* 3iop_A* 3qd3_A* 3qd4_A* 3h9o_A* 1uu3_A* ...
Probab=100.00 E-value=1.8e-52 Score=424.37 Aligned_cols=248 Identities=23% Similarity=0.312 Sum_probs=209.3
Q ss_pred ccCCccccccccccEEEEEEEec-CCCeEEEEEechhh---HHHHHHHHHHHHHHHhcCCCceeeEeeeeecCCeeEEEE
Q 005040 427 DEFNECNLLGTGGFGSVYKGTLS-DGTNVAIKIFNLQL---ERAFRSFDSECEILRNVRHRNLLKILGSCSNLDFKALVL 502 (717)
Q Consensus 427 ~~~~~~~~lg~G~~g~V~~~~~~-~~~~vavK~~~~~~---~~~~~~~~~e~~~l~~l~hpniv~~~~~~~~~~~~~lv~ 502 (717)
++|++.+.||+|+||+||+|+.. +++.||||++.+.. ....+.+.+|++++++++|||||++++++.+.+..|+||
T Consensus 32 ~dy~i~~~lG~G~fg~V~~a~~~~~~~~~AiK~i~k~~~~~~~~~~~~~~E~~il~~l~HpnIv~l~~~~~~~~~~yivm 111 (311)
T 4aw0_A 32 EDFKFGKILGEGSFSTVVLARELATSREYAIKILEKRHIIKENKVPYVTRERDVMSRLDHPFFVKLYFTFQDDEKLYFGL 111 (311)
T ss_dssp GGEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEEHHHHHHTTCHHHHHHHHHHHTTCCCTTBCCEEEEEECSSEEEEEE
T ss_pred cccEEEEEEecccCeEEEEEEECCCCCEEEEEEEEHHHCCCHHHHHHHHHHHHHHHhCCCCCCCeEEEEEEeCCEEEEEE
Confidence 67999999999999999999975 79999999997653 234567899999999999999999999999999999999
Q ss_pred EccCCCCHHHHHhhCCCCCCHHHHHHHHHHHHHHHHHHhhcCCCCCeEecCCCCCCeeeCCCCcEEEeeeccccccCCCC
Q 005040 503 EFMPNGSLEKWLYSHNYFLDILQRLNIMIDVGSALEYLHHCHSSAPIIHCDLKPTNILLDENMVAHVSDFGISKLLGEGE 582 (717)
Q Consensus 503 e~~~~g~L~~~l~~~~~~~~~~~~~~i~~~i~~~l~~LH~~~~~~~ivH~dlk~~Nill~~~~~~kl~Dfgl~~~~~~~~ 582 (717)
|||+||+|.+++++.+ .+++..+..++.||+.||+||| +++|+||||||+|||++.++.+||+|||+|+.+....
T Consensus 112 Ey~~gG~L~~~i~~~~-~l~e~~~~~~~~qi~~al~ylH----~~~IiHRDlKPeNILl~~~g~vKl~DFGla~~~~~~~ 186 (311)
T 4aw0_A 112 SYAKNGELLKYIRKIG-SFDETCTRFYTAEIVSALEYLH----GKGIIHRDLKPENILLNEDMHIQITDFGTAKVLSPES 186 (311)
T ss_dssp CCCTTEEHHHHHHHHS-SCCHHHHHHHHHHHHHHHHHHH----HTTEECSCCSGGGEEECTTSCEEECCCTTCEECCTTT
T ss_pred ecCCCCCHHHHHHHcC-CCCHHHHHHHHHHHHHHHHHHH----HCCCccCCCCHHHeEEcCCCCEEEEEcCCceecCCCC
Confidence 9999999999998754 4899999999999999999999 6899999999999999999999999999999876544
Q ss_pred CceeeeccccCccccCCCccCCCCcCcccchhhHHHHHHHHHhCCCCCCccccCcchHHHHHHhhCCCchhhhccccchh
Q 005040 583 DSVIQTMTMATIGYMAPEYGSEGIVSTKCDVYSYGVLLMETFTEKKPTDEMFTGEMSLRRWVKESLPHRLTEVVDANLVR 662 (717)
Q Consensus 583 ~~~~~~~~~~t~~y~aPE~~~~~~~~~~~Dvws~G~il~el~tg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 662 (717)
........+||+.|||||++.+..|+.++||||+||++|||++|+.||.+... ..+...+.... ..
T Consensus 187 ~~~~~~~~~GTp~YmAPEvl~~~~y~~~~DiWSlGvilyeml~G~~PF~~~~~--~~~~~~i~~~~---------~~--- 252 (311)
T 4aw0_A 187 KQARANSFVGTAQYVSPELLTEKSACKSSDLWALGCIIYQLVAGLPPFRAGNE--GLIFAKIIKLE---------YD--- 252 (311)
T ss_dssp TCCCBCCCCSCGGGCCHHHHHHSCBCHHHHHHHHHHHHHHHHHSSCSSCCSSH--HHHHHHHHHTC---------CC---
T ss_pred CcccccCcccCcccCCHHHHcCCCCCcHHHHHHHHHHHHHHHhCCCCCCCCCH--HHHHHHHHcCC---------CC---
Confidence 33344566899999999999999999999999999999999999999975321 11111111100 00
Q ss_pred hhhhhhhhHHHHHHHHHHHhhccCCCCCCCCCHHHHH
Q 005040 663 EEQAFSDKMDCLFSIMDLALDCCMDTPHKRIHMTDAA 699 (717)
Q Consensus 663 ~~~~~~~~~~~~~~l~~li~~cl~~~P~~Rpt~~ev~ 699 (717)
+ +..++.++.++|.+||..||++|||++|+.
T Consensus 253 ----~--p~~~s~~~~dli~~lL~~dp~~R~t~~e~~ 283 (311)
T 4aw0_A 253 ----F--PEKFFPKARDLVEKLLVLDATKRLGCEEME 283 (311)
T ss_dssp ----C--CTTCCHHHHHHHHHHSCSSGGGSTTSGGGT
T ss_pred ----C--CcccCHHHHHHHHHHccCCHhHCcChHHHc
Confidence 0 112345688999999999999999999874
No 7
>4b9d_A Serine/threonine-protein kinase NEK1; transferase, inhibitor; HET: CK7; 1.90A {Homo sapiens} PDB: 4apc_A*
Probab=100.00 E-value=1.6e-52 Score=431.94 Aligned_cols=248 Identities=21% Similarity=0.342 Sum_probs=202.0
Q ss_pred ccCCccccccccccEEEEEEEec-CCCeEEEEEechhh--HHHHHHHHHHHHHHHhcCCCceeeEeeeeecCCeeEEEEE
Q 005040 427 DEFNECNLLGTGGFGSVYKGTLS-DGTNVAIKIFNLQL--ERAFRSFDSECEILRNVRHRNLLKILGSCSNLDFKALVLE 503 (717)
Q Consensus 427 ~~~~~~~~lg~G~~g~V~~~~~~-~~~~vavK~~~~~~--~~~~~~~~~e~~~l~~l~hpniv~~~~~~~~~~~~~lv~e 503 (717)
++|++.+.||+|+||+||+|+.. +|+.||||++.... ....+.+.+|++++++++|||||++++++.+.+..|+|||
T Consensus 24 e~Y~~~~~lG~G~fg~V~~a~~~~~~~~vAiK~i~~~~~~~~~~~~~~~E~~il~~l~HpnIV~~~~~~~~~~~~yiVmE 103 (350)
T 4b9d_A 24 EKYVRLQKIGEGSFGKAILVKSTEDGRQYVIKEINISRMSSKEREESRREVAVLANMKHPNIVQYRESFEENGSLYIVMD 103 (350)
T ss_dssp CCEEEEEEC------CEEEEEETTTCCEEEEEEEECTTSCHHHHHHHHHHHHHHHHCCCTTBCCEEEEEEETTEEEEEEE
T ss_pred cceEEeEEEecCCCeEEEEEEECCCCCEEEEEEEehHHCCHHHHHHHHHHHHHHHHCCCCCCCcEEEEEEECCEEEEEEe
Confidence 68999999999999999999975 79999999997543 3455778999999999999999999999999999999999
Q ss_pred ccCCCCHHHHHhhC-CCCCCHHHHHHHHHHHHHHHHHHhhcCCCCCeEecCCCCCCeeeCCCCcEEEeeeccccccCCCC
Q 005040 504 FMPNGSLEKWLYSH-NYFLDILQRLNIMIDVGSALEYLHHCHSSAPIIHCDLKPTNILLDENMVAHVSDFGISKLLGEGE 582 (717)
Q Consensus 504 ~~~~g~L~~~l~~~-~~~~~~~~~~~i~~~i~~~l~~LH~~~~~~~ivH~dlk~~Nill~~~~~~kl~Dfgl~~~~~~~~ 582 (717)
||+||+|.+++... ...+++..+..++.||+.||+||| +++|+||||||+|||++.++.+||+|||+|+......
T Consensus 104 y~~gg~L~~~i~~~~~~~~~e~~~~~~~~qi~~aL~ylH----~~~IiHRDlKp~NILl~~~g~vKl~DFGla~~~~~~~ 179 (350)
T 4b9d_A 104 YCEGGDLFKRINAQKGVLFQEDQILDWFVQICLALKHVH----DRKILHRDIKSQNIFLTKDGTVQLGDFGIARVLNSTV 179 (350)
T ss_dssp CCTTCBHHHHHHHTTTCCCCHHHHHHHHHHHHHHHHHHH----HTTCEETTCCGGGEEECTTCCEEECSTTEESCCCHHH
T ss_pred CCCCCcHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHHH----HCCeeeccCCHHHEEECCCCCEEEcccccceeecCCc
Confidence 99999999999854 345789999999999999999999 6899999999999999999999999999998764211
Q ss_pred CceeeeccccCccccCCCccCCCCcCcccchhhHHHHHHHHHhCCCCCCccccCcchHHHHH-HhhCCCchhhhccccch
Q 005040 583 DSVIQTMTMATIGYMAPEYGSEGIVSTKCDVYSYGVLLMETFTEKKPTDEMFTGEMSLRRWV-KESLPHRLTEVVDANLV 661 (717)
Q Consensus 583 ~~~~~~~~~~t~~y~aPE~~~~~~~~~~~Dvws~G~il~el~tg~~p~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~ 661 (717)
......+||+.|||||++.+..|+.++||||+||++|||+||+.||.+... ......+ ....+
T Consensus 180 --~~~~~~~GT~~YmAPE~l~~~~y~~~~DiwSlGvilyemltG~~PF~~~~~--~~~~~~i~~~~~~------------ 243 (350)
T 4b9d_A 180 --ELARACIGTPYYLSPEICENKPYNNKSDIWALGCVLYELCTLKHAFEAGSM--KNLVLKIISGSFP------------ 243 (350)
T ss_dssp --HHHHHHHSCCTTCCHHHHTTCCCCHHHHHHHHHHHHHHHHHSSCSCCCSSH--HHHHHHHHHTCCC------------
T ss_pred --ccccccCCCccccCHHHHCCCCCCcHHHHHHHHHHHHHHHHCCCCCCCcCH--HHHHHHHHcCCCC------------
Confidence 122345799999999999999999999999999999999999999976321 1111111 11111
Q ss_pred hhhhhhhhhHHHHHHHHHHHhhccCCCCCCCCCHHHHHH
Q 005040 662 REEQAFSDKMDCLFSIMDLALDCCMDTPHKRIHMTDAAA 700 (717)
Q Consensus 662 ~~~~~~~~~~~~~~~l~~li~~cl~~~P~~Rpt~~ev~~ 700 (717)
+....++.++.+||.+||+.||++|||++|+++
T Consensus 244 ------~~~~~~s~~~~~li~~~L~~dP~~R~s~~e~l~ 276 (350)
T 4b9d_A 244 ------PVSLHYSYDLRSLVSQLFKRNPRDRPSVNSILE 276 (350)
T ss_dssp ------CCCTTSCHHHHHHHHHHTCSSGGGSCCHHHHHT
T ss_pred ------CCCccCCHHHHHHHHHHccCChhHCcCHHHHhc
Confidence 011234566889999999999999999999986
No 8
>4g3f_A NF-kappa-beta-inducing kinase; non-RD kinase, protein serine/threonine kinase, S based drug design, MAP3K14, transferase; HET: 0WB; 1.64A {Mus musculus} PDB: 4g3g_A* 4g3c_A 4dn5_A*
Probab=100.00 E-value=3.8e-52 Score=427.26 Aligned_cols=256 Identities=20% Similarity=0.251 Sum_probs=208.6
Q ss_pred hccCCccccccccccEEEEEEEec-CCCeEEEEEechhhHHHHHHHHHHHHHHHhcCCCceeeEeeeeecCCeeEEEEEc
Q 005040 426 TDEFNECNLLGTGGFGSVYKGTLS-DGTNVAIKIFNLQLERAFRSFDSECEILRNVRHRNLLKILGSCSNLDFKALVLEF 504 (717)
Q Consensus 426 ~~~~~~~~~lg~G~~g~V~~~~~~-~~~~vavK~~~~~~~~~~~~~~~e~~~l~~l~hpniv~~~~~~~~~~~~~lv~e~ 504 (717)
.+.|+..++||+|+||.||+|+++ +|+.||||+++.... ..+|+.++++++|||||++++++.+.+..|+||||
T Consensus 57 ~~~~~~~~~lG~G~fG~Vy~a~~~~~g~~vAiK~i~~~~~-----~~~E~~il~~l~HpnIV~l~~~~~~~~~~~ivmEy 131 (336)
T 4g3f_A 57 VHWMTHQPRVGRGSFGEVHRMKDKQTGFQCAVKKVRLEVF-----RVEELVACAGLSSPRIVPLYGAVREGPWVNIFMEL 131 (336)
T ss_dssp TTEEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEETTTC-----CTHHHHTTTTCCCTTBCCEEEEEEETTEEEEEECC
T ss_pred hhheEeCcEeccCCCeEEEEEEECCCCCEEEEEEECHHHh-----HHHHHHHHHhCCCCCCCcEEEEEEECCEEEEEEec
Confidence 356888899999999999999975 799999999975432 24699999999999999999999999999999999
Q ss_pred cCCCCHHHHHhhCCCCCCHHHHHHHHHHHHHHHHHHhhcCCCCCeEecCCCCCCeeeCCCC-cEEEeeeccccccCCCCC
Q 005040 505 MPNGSLEKWLYSHNYFLDILQRLNIMIDVGSALEYLHHCHSSAPIIHCDLKPTNILLDENM-VAHVSDFGISKLLGEGED 583 (717)
Q Consensus 505 ~~~g~L~~~l~~~~~~~~~~~~~~i~~~i~~~l~~LH~~~~~~~ivH~dlk~~Nill~~~~-~~kl~Dfgl~~~~~~~~~ 583 (717)
|+||+|.+++++.+ .+++..+..++.||+.||+||| +++|+||||||+|||++.+| ++||+|||+|+.+.....
T Consensus 132 ~~gg~L~~~l~~~~-~l~e~~~~~~~~qi~~aL~ylH----~~~IiHRDlKp~NILl~~~g~~vKl~DFGla~~~~~~~~ 206 (336)
T 4g3f_A 132 LEGGSLGQLIKQMG-CLPEDRALYYLGQALEGLEYLH----TRRILHGDVKADNVLLSSDGSRAALCDFGHALCLQPDGL 206 (336)
T ss_dssp CTTCBHHHHHHHHS-SCCHHHHHHHHHHHHHHHHHHH----TTTEECSCCCGGGEEECTTSCCEEECCCTTCEEC-----
T ss_pred cCCCcHHHHHHHcC-CCCHHHHHHHHHHHHHHHHHHH----HCCceecccCHHHEEEeCCCCEEEEeeCCCCeEccCCCc
Confidence 99999999998754 4899999999999999999999 78999999999999999987 699999999987754322
Q ss_pred c---eeeeccccCccccCCCccCCCCcCcccchhhHHHHHHHHHhCCCCCCccccCcchHHHHHHhhCCCchhhhccccc
Q 005040 584 S---VIQTMTMATIGYMAPEYGSEGIVSTKCDVYSYGVLLMETFTEKKPTDEMFTGEMSLRRWVKESLPHRLTEVVDANL 660 (717)
Q Consensus 584 ~---~~~~~~~~t~~y~aPE~~~~~~~~~~~Dvws~G~il~el~tg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 660 (717)
. ......+||+.|||||++.+..|+.++||||+||++|||+||+.||.+....+. ....... .+ . .
T Consensus 207 ~~~~~~~~~~~GT~~YmAPE~~~~~~y~~~~DiwSlGvilyemltG~~Pf~~~~~~~~-~~~i~~~-~~-~--------~ 275 (336)
T 4g3f_A 207 GKSLLTGDYIPGTETHMAPEVVMGKPCDAKVDIWSSCCMMLHMLNGCHPWTQYFRGPL-CLKIASE-PP-P--------I 275 (336)
T ss_dssp -------CCCCCCGGGCCHHHHTTCCCCTHHHHHHHHHHHHHHHHSSCSSTTTCCSCC-HHHHHHS-CC-G--------G
T ss_pred ccceecCCccccCccccCHHHHCCCCCCcHHHHHHHHHHHHHHHHCcCCCCCCCHHHH-HHHHHcC-CC-C--------c
Confidence 1 122345799999999999999999999999999999999999999976433322 1111110 00 0 0
Q ss_pred hhhhhhhhhhHHHHHHHHHHHhhccCCCCCCCCCHHHHHHHHHHhHHh
Q 005040 661 VREEQAFSDKMDCLFSIMDLALDCCMDTPHKRIHMTDAAAKLRKIKAK 708 (717)
Q Consensus 661 ~~~~~~~~~~~~~~~~l~~li~~cl~~~P~~Rpt~~ev~~~L~~~~~~ 708 (717)
. ..+..++.++.++|.+||+.||++|||+.|+++.|....+.
T Consensus 276 ~------~~~~~~s~~~~~li~~~L~~dP~~R~sa~el~~~l~~~l~~ 317 (336)
T 4g3f_A 276 R------EIPPSCAPLTAQAIQEGLRKEPVHRASAMELRRKVGKALQE 317 (336)
T ss_dssp G------GSCTTSCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHHHH
T ss_pred h------hcCccCCHHHHHHHHHHccCCHhHCcCHHHHHHHHHHHHhh
Confidence 0 11124566788999999999999999999999998877554
No 9
>3hmm_A TGF-beta receptor type-1; ALK5, kinase, inhibitor, quinazoline, aortic aneurysm, ATP-binding, craniosynostosis, disease mutation, disulfide bond; HET: 855; 1.70A {Homo sapiens} PDB: 1vjy_A* 3gxl_A* 3tzm_A* 2wot_A* 2wou_A* 1py5_A* 1rw8_A*
Probab=100.00 E-value=4.7e-52 Score=426.38 Aligned_cols=270 Identities=21% Similarity=0.304 Sum_probs=205.4
Q ss_pred ccCCccccccccccEEEEEEEecCCCeEEEEEechhhHHHHHHHHHHHHHHHhcCCCceeeEeeeeecCC----eeEEEE
Q 005040 427 DEFNECNLLGTGGFGSVYKGTLSDGTNVAIKIFNLQLERAFRSFDSECEILRNVRHRNLLKILGSCSNLD----FKALVL 502 (717)
Q Consensus 427 ~~~~~~~~lg~G~~g~V~~~~~~~~~~vavK~~~~~~~~~~~~~~~e~~~l~~l~hpniv~~~~~~~~~~----~~~lv~ 502 (717)
.+|.+.+.||+|+||+||+|++ +|+.||||++....... ..+..|+..+.+++|||||+++|++.+.+ .+|+||
T Consensus 3 r~i~L~~~iG~G~fG~Vy~~~~-~g~~VAvK~l~~~~~~~-~~~e~Ei~~~~~l~HpNIv~l~g~~~~~~~~~~~~~lV~ 80 (303)
T 3hmm_A 3 RTIVLQESIGKGRFGEVWRGKW-RGEEVAVKIFSSREERS-WFREAEIYQTVMLRHENILGFIAADNKDNGTWTQLWLVS 80 (303)
T ss_dssp GGEEEEEEEEECSSSEEEEEEE-TTEEEEEEEECGGGHHH-HHHHHHHHTSTTCCCTTBCCEEEEEEEECSSSEEEEEEE
T ss_pred cEEEEEEEEeeCCCeEEEEEEE-CCEEEEEEEECccchhh-HHHHHHHHHHhcCCCCCCCcEEEEEEecCCCceEEEEEe
Confidence 4677889999999999999998 58999999997654322 23345677777899999999999997643 579999
Q ss_pred EccCCCCHHHHHhhCCCCCCHHHHHHHHHHHHHHHHHHhhcC----CCCCeEecCCCCCCeeeCCCCcEEEeeecccccc
Q 005040 503 EFMPNGSLEKWLYSHNYFLDILQRLNIMIDVGSALEYLHHCH----SSAPIIHCDLKPTNILLDENMVAHVSDFGISKLL 578 (717)
Q Consensus 503 e~~~~g~L~~~l~~~~~~~~~~~~~~i~~~i~~~l~~LH~~~----~~~~ivH~dlk~~Nill~~~~~~kl~Dfgl~~~~ 578 (717)
|||++|+|.++++... ++|..+.+++.|+++||+|||+.. ...+|+||||||+|||++.++++||+|||+++..
T Consensus 81 Ey~~~gsL~~~l~~~~--l~~~~~~~i~~~ia~gl~ylH~~~~~~~~~~~IiHRDlKp~NILl~~~~~~Ki~DFGla~~~ 158 (303)
T 3hmm_A 81 DYHEHGSLFDYLNRYT--VTVEGMIKLALSTASGLAHLHMEIVGTQGKPAIAHRDLKSKNILVKKNGTCCIADLGLAVRH 158 (303)
T ss_dssp ECCTTCBHHHHHHHCC--BCHHHHHHHHHHHHHHHHHHHCCBCSTTCBCCEECSCCCGGGEEECTTSCEEECCCTTCEEE
T ss_pred cCCCCCcHHHHHHhCC--CCHHHHHHHHHHHHHHHHHHHHhhhhccCCCCEeeccCCcccEEECCCCCEEEEeCCCCccc
Confidence 9999999999998754 899999999999999999999421 1238999999999999999999999999999877
Q ss_pred CCCCCce--eeeccccCccccCCCccCCC------CcCcccchhhHHHHHHHHHhCCCCCCccccCcc----------hH
Q 005040 579 GEGEDSV--IQTMTMATIGYMAPEYGSEG------IVSTKCDVYSYGVLLMETFTEKKPTDEMFTGEM----------SL 640 (717)
Q Consensus 579 ~~~~~~~--~~~~~~~t~~y~aPE~~~~~------~~~~~~Dvws~G~il~el~tg~~p~~~~~~~~~----------~~ 640 (717)
....... .....+||+.|||||++.+. .++.++|||||||++|||+||+.||......+. ..
T Consensus 159 ~~~~~~~~~~~~~~~GT~~ymAPE~l~~~~~~~~~~~~~k~DVwS~Gvvl~El~tg~~~~~~~~~~~~p~~~~~~~~~~~ 238 (303)
T 3hmm_A 159 DSATDTIDIAPNHRVGTKRYMAPEVLDDSINMKHFESFKRADIYAMGLVFWEIARRCSIGGIHEDYQLPYYDLVPSDPSV 238 (303)
T ss_dssp ETTTTEESCC-----CCGGGCCHHHHTTCSCTTCHHHHHHHHHHHHHHHHHHHHHTBCBTTBCCCCCCTTTTTSCSSCCH
T ss_pred cCCCCceeeecccccccccccCHHHhcccccccCCccChhHhhhhHHHHHHHHHHCCCCCCccccccccchhcccccchH
Confidence 5443322 22345799999999987654 478899999999999999999887754322211 11
Q ss_pred HHHHHhhCCCchhhhccccchhhhhhhhhhHHHHHHHHHHHhhccCCCCCCCCCHHHHHHHHHHhHHh
Q 005040 641 RRWVKESLPHRLTEVVDANLVREEQAFSDKMDCLFSIMDLALDCCMDTPHKRIHMTDAAAKLRKIKAK 708 (717)
Q Consensus 641 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~cl~~~P~~Rpt~~ev~~~L~~~~~~ 708 (717)
....... .+..+....+......+++..+.+++.+||+.||++||||.||++.|+++.++
T Consensus 239 ~~~~~~~--------~~~~~rp~~p~~~~~~~~~~~l~~li~~cl~~dP~~RPt~~ei~~~L~~l~~~ 298 (303)
T 3hmm_A 239 EEMRKVV--------CEQKLRPNIPNRWQSCEALRVMAKIMRECWYANGAARLTALRIKKTLSQLSQQ 298 (303)
T ss_dssp HHHHHHH--------TTSCCCCCCCGGGGSSHHHHHHHHHHHTTCCSSGGGSCCHHHHHHHHHHHHHC
T ss_pred HHHHHHH--------hcccCCCCCCccccchHHHHHHHHHHHHHcccCHhHCcCHHHHHHHHHHHHHH
Confidence 1111111 11111111111222345677899999999999999999999999999998654
No 10
>4ase_A Vascular endothelial growth factor receptor 2; transferase, angiogenesis, signaling protein, phosphorylatio receptor, inhibitor; HET: AV9; 1.83A {Homo sapiens} PDB: 4agd_A* 4asd_A* 4agc_A*
Probab=100.00 E-value=2e-51 Score=427.56 Aligned_cols=263 Identities=27% Similarity=0.412 Sum_probs=216.5
Q ss_pred HhccCCccccccccccEEEEEEEecC------CCeEEEEEechhh-HHHHHHHHHHHHHHHhcCC-CceeeEeeeeec-C
Q 005040 425 ATDEFNECNLLGTGGFGSVYKGTLSD------GTNVAIKIFNLQL-ERAFRSFDSECEILRNVRH-RNLLKILGSCSN-L 495 (717)
Q Consensus 425 ~~~~~~~~~~lg~G~~g~V~~~~~~~------~~~vavK~~~~~~-~~~~~~~~~e~~~l~~l~h-pniv~~~~~~~~-~ 495 (717)
..++|++.+.||+|+||.||+|.+.. ++.||||++.... ....+.+.+|++++++++| ||||+++|+|.+ .
T Consensus 62 ~~~~~~l~~~LG~G~fG~Vy~a~~~~~~~~~~~k~VAvK~l~~~~~~~~~~~~~~E~~il~~l~hhpnIV~l~g~~~~~~ 141 (353)
T 4ase_A 62 PRDRLKLGKPLGRGAFGQVIEADAFGIDKTATCRTVAVKMLKEGATHSEHRALMSELKILIHIGHHLNVVNLLGACTKPG 141 (353)
T ss_dssp CGGGEEEEEEEEECSSEEEEEEEEETSSSTTCEEEEEEEEECTTCCHHHHHHHHHHHHHHHHHCCCTTBCCEEEEECCTT
T ss_pred cHHHeEEeeEEecCCCeEEEEEEEcCCCcccCCeEEEEEEEccccChHHHHHHHHHHHHHHHcCCCCcEEEEEEEEEecC
Confidence 45789999999999999999998642 3579999997654 3445779999999999965 999999999865 4
Q ss_pred CeeEEEEEccCCCCHHHHHhhC---------------CCCCCHHHHHHHHHHHHHHHHHHhhcCCCCCeEecCCCCCCee
Q 005040 496 DFKALVLEFMPNGSLEKWLYSH---------------NYFLDILQRLNIMIDVGSALEYLHHCHSSAPIIHCDLKPTNIL 560 (717)
Q Consensus 496 ~~~~lv~e~~~~g~L~~~l~~~---------------~~~~~~~~~~~i~~~i~~~l~~LH~~~~~~~ivH~dlk~~Nil 560 (717)
+..++|||||++|+|.++++.. ...+++..+..++.|||+||+||| +++||||||||+|||
T Consensus 142 ~~~~iV~Ey~~~G~L~~~L~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~qia~gl~yLH----~~~iiHRDLK~~NIL 217 (353)
T 4ase_A 142 GPLMVIVEFCKFGNLSTYLRSKRNEFVPYKVAPEDLYKDFLTLEHLICYSFQVAKGMEFLA----SRKCIHRDLAARNIL 217 (353)
T ss_dssp SCCEEEEECCTTEEHHHHHHHTGGGBCCC-------CTTCBCHHHHHHHHHHHHHHHHHHH----HTTCCCSCCSGGGEE
T ss_pred CEEEEEEEcCCCCCHHHHHHhcccccccccccchhhccccCCHHHHHHHHHHHHHHHHhHh----hCCeecCccCcccee
Confidence 5689999999999999999853 234899999999999999999999 678999999999999
Q ss_pred eCCCCcEEEeeeccccccCCCCCceeeeccccCccccCCCccCCCCcCcccchhhHHHHHHHHHh-CCCCCCccccCcch
Q 005040 561 LDENMVAHVSDFGISKLLGEGEDSVIQTMTMATIGYMAPEYGSEGIVSTKCDVYSYGVLLMETFT-EKKPTDEMFTGEMS 639 (717)
Q Consensus 561 l~~~~~~kl~Dfgl~~~~~~~~~~~~~~~~~~t~~y~aPE~~~~~~~~~~~Dvws~G~il~el~t-g~~p~~~~~~~~~~ 639 (717)
+++++.+||+|||+|+.+.............||+.|||||++.++.|+.++|||||||++|||+| |+.||.+....+ .
T Consensus 218 l~~~~~vKi~DFGlar~~~~~~~~~~~~~~~gt~~ymAPE~l~~~~y~~ksDVwS~Gv~l~El~t~G~~Pf~~~~~~~-~ 296 (353)
T 4ase_A 218 LSEKNVVKICDFGLARDIYKDPDYVRKGDARLPLKWMAPETIFDRVYTIQSDVWSFGVLLWEIFSLGASPYPGVKIDE-E 296 (353)
T ss_dssp ECGGGCEEECCCGGGSCTTTCTTSEEETTEEECGGGCCHHHHHHCCCCHHHHHHHHHHHHHHHTTTSCCSSTTCCCSH-H
T ss_pred eCCCCCEEECcchhhhhcccCCCceeeccccccccccCHHHHhcCCCCCcccEeehHHHHHHHHhCCCCCCCCCCHHH-H
Confidence 99999999999999998765554444556679999999999999999999999999999999998 899997643222 2
Q ss_pred HHHHHHhhCCCchhhhccccchhhhhhhhhhHHHHHHHHHHHhhccCCCCCCCCCHHHHHHHHHHhHHhh
Q 005040 640 LRRWVKESLPHRLTEVVDANLVREEQAFSDKMDCLFSIMDLALDCCMDTPHKRIHMTDAAAKLRKIKAKF 709 (717)
Q Consensus 640 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~cl~~~P~~Rpt~~ev~~~L~~~~~~~ 709 (717)
+...+..... ...+..++.++.+++.+||+.||++||||+|+++.|+++.+..
T Consensus 297 ~~~~i~~g~~-----------------~~~p~~~~~~~~~li~~c~~~dP~~RPt~~eil~~L~~llq~~ 349 (353)
T 4ase_A 297 FCRRLKEGTR-----------------MRAPDYTTPEMYQTMLDCWHGEPSQRPTFSELVEHLGNLLQAN 349 (353)
T ss_dssp HHHHHHHTCC-----------------CCCCTTCCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHHHHT
T ss_pred HHHHHHcCCC-----------------CCCCccCCHHHHHHHHHHcCcChhHCcCHHHHHHHHHHHHHHh
Confidence 2222221110 0111235567889999999999999999999999999987654
No 11
>4fie_A Serine/threonine-protein kinase PAK 4; kinase domain, protein ATP binding, phosphorylation, transferase; HET: SEP ANP; 3.11A {Homo sapiens}
Probab=100.00 E-value=1.6e-51 Score=434.31 Aligned_cols=249 Identities=22% Similarity=0.313 Sum_probs=209.7
Q ss_pred ccCCccccccccccEEEEEEEec-CCCeEEEEEechhhHHHHHHHHHHHHHHHhcCCCceeeEeeeeecCCeeEEEEEcc
Q 005040 427 DEFNECNLLGTGGFGSVYKGTLS-DGTNVAIKIFNLQLERAFRSFDSECEILRNVRHRNLLKILGSCSNLDFKALVLEFM 505 (717)
Q Consensus 427 ~~~~~~~~lg~G~~g~V~~~~~~-~~~~vavK~~~~~~~~~~~~~~~e~~~l~~l~hpniv~~~~~~~~~~~~~lv~e~~ 505 (717)
+.|+..+.||+|+||.||+|.++ +|+.||||++........+.+.+|+++|++++|||||++++++.+.+..|+|||||
T Consensus 151 ~~y~~~~~iG~G~fG~V~~a~~~~tg~~vAiK~i~~~~~~~~~~~~~Ei~il~~l~HpnIV~l~~~~~~~~~~~iVmEy~ 230 (423)
T 4fie_A 151 SYLDNFIKIGEGSTGIVCIATVRSSGKLVAVKKMDLRKQQRRELLFNEVVIMRDYQHENVVEMYNSYLVGDELWVVMEFL 230 (423)
T ss_dssp GTEEEEEEEEECSSCEEEEEEETTTCCEEEEEEEESTTCSSGGGHHHHHHHHHHCCCTTBCCEEEEEEETTEEEEEEECC
T ss_pred HhcEeeeEeccCcCcEEEEEEECCCCCEEEEEEEeccchhHHHHHHHHHHHHHhCCCCCCCceEEEEEECCEEEEEEeCC
Confidence 56999999999999999999976 79999999997665444567889999999999999999999999999999999999
Q ss_pred CCCCHHHHHhhCCCCCCHHHHHHHHHHHHHHHHHHhhcCCCCCeEecCCCCCCeeeCCCCcEEEeeeccccccCCCCCce
Q 005040 506 PNGSLEKWLYSHNYFLDILQRLNIMIDVGSALEYLHHCHSSAPIIHCDLKPTNILLDENMVAHVSDFGISKLLGEGEDSV 585 (717)
Q Consensus 506 ~~g~L~~~l~~~~~~~~~~~~~~i~~~i~~~l~~LH~~~~~~~ivH~dlk~~Nill~~~~~~kl~Dfgl~~~~~~~~~~~ 585 (717)
+||+|.++++... +++..+..++.||+.||+||| +++|+||||||+|||++.+|.+||+|||+|+.+.....
T Consensus 231 ~gG~L~~~i~~~~--l~e~~~~~~~~qil~aL~ylH----~~~IiHRDiKp~NILl~~~g~vKl~DFGla~~~~~~~~-- 302 (423)
T 4fie_A 231 EGGALTDIVTHTR--MNEEQIAAVCLAVLQALSVLH----AQGVIHRDIKSDSILLTHDGRVKLSDFGFCAQVSKEVP-- 302 (423)
T ss_dssp TTEEHHHHHHHSC--CCHHHHHHHHHHHHHHHHHHH----HTTEECCCCSTTTEEECTTCCEEECCCTTCEECCSSCC--
T ss_pred CCCcHHHHHhccC--CCHHHHHHHHHHHHHHHHHHH----HCCeecccCCHHHEEEcCCCCEEEecCccceECCCCCc--
Confidence 9999999998654 899999999999999999999 68999999999999999999999999999987754322
Q ss_pred eeeccccCccccCCCccCCCCcCcccchhhHHHHHHHHHhCCCCCCccccCcchHHHHHHhhCCCchhhhccccchhhhh
Q 005040 586 IQTMTMATIGYMAPEYGSEGIVSTKCDVYSYGVLLMETFTEKKPTDEMFTGEMSLRRWVKESLPHRLTEVVDANLVREEQ 665 (717)
Q Consensus 586 ~~~~~~~t~~y~aPE~~~~~~~~~~~Dvws~G~il~el~tg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 665 (717)
.....+||+.|||||++.+..|+.++||||+||++|||++|+.||.+.. .......+....+..
T Consensus 303 ~~~~~~GTp~YmAPEvl~~~~y~~~~DiWSlGvilyeml~G~~PF~~~~--~~~~~~~i~~~~~~~-------------- 366 (423)
T 4fie_A 303 RRKSLVGTPYWMAPELISRLPYGPEVDIWSLGIMVIEMVDGEPPYFNEP--PLKAMKMIRDNLPPR-------------- 366 (423)
T ss_dssp CBCCCEECTTTCCHHHHTTCCBCTHHHHHHHHHHHHHHHHSSCTTTTSC--HHHHHHHHHHSCCCC--------------
T ss_pred cccccccCcCcCCHHHHCCCCCCcHHHHHHHHHHHHHHHHCCCCCCCcC--HHHHHHHHHcCCCCC--------------
Confidence 2345679999999999999999999999999999999999999997532 112222222221111
Q ss_pred hhhhhHHHHHHHHHHHhhccCCCCCCCCCHHHHHH
Q 005040 666 AFSDKMDCLFSIMDLALDCCMDTPHKRIHMTDAAA 700 (717)
Q Consensus 666 ~~~~~~~~~~~l~~li~~cl~~~P~~Rpt~~ev~~ 700 (717)
......++.++.+||.+||..||++|||++|+++
T Consensus 367 -~~~~~~~s~~~~dli~~~L~~dP~~R~ta~ell~ 400 (423)
T 4fie_A 367 -LKNLHKVSPSLKGFLDRLLVRDPAQRATAAELLK 400 (423)
T ss_dssp -CSCTTSSCHHHHHHHHHHSCSSTTTSCCHHHHTT
T ss_pred -CcccccCCHHHHHHHHHHcCCChhHCcCHHHHhc
Confidence 0111234566889999999999999999999876
No 12
>3fpq_A Serine/threonine-protein kinase WNK1; protein serine/threonine kinase, transferase, ATP-BIND kinase, nucleotide-binding, phosphoprotein; 1.80A {Rattus norvegicus}
Probab=100.00 E-value=8.7e-51 Score=410.38 Aligned_cols=244 Identities=24% Similarity=0.366 Sum_probs=195.7
Q ss_pred CccccccccccEEEEEEEec-CCCeEEEEEechhh--HHHHHHHHHHHHHHHhcCCCceeeEeeeeec----CCeeEEEE
Q 005040 430 NECNLLGTGGFGSVYKGTLS-DGTNVAIKIFNLQL--ERAFRSFDSECEILRNVRHRNLLKILGSCSN----LDFKALVL 502 (717)
Q Consensus 430 ~~~~~lg~G~~g~V~~~~~~-~~~~vavK~~~~~~--~~~~~~~~~e~~~l~~l~hpniv~~~~~~~~----~~~~~lv~ 502 (717)
+..+.||+|+||+||+|.+. +++.||+|++.... ....+.+.+|++++++++|||||++++++.+ ....|+||
T Consensus 29 ~~~~~iG~G~fg~Vy~a~~~~~~~~vAiK~i~~~~~~~~~~~~~~~E~~il~~l~HpnIV~~~~~~~~~~~~~~~~~lvm 108 (290)
T 3fpq_A 29 KFDIEIGRGSFKTVYKGLDTETTVEVAWCELQDRKLTKSERQRFKEEAEMLKGLQHPNIVRFYDSWESTVKGKKCIVLVT 108 (290)
T ss_dssp EEEEEEEECSSEEEEEEEETTTCCEEEEEEEEGGGSCHHHHHHHHHHHHHHHTCCCTTBCCEEEEEEEEETTEEEEEEEE
T ss_pred EeeeEEecCcCcEEEEEEECCCCeEEEEEEEchhhCCHHHHHHHHHHHHHHHhCCCCCCCcEEEEEeeccCCCcEEEEEE
Confidence 45567999999999999975 78999999997543 3445779999999999999999999999865 35689999
Q ss_pred EccCCCCHHHHHhhCCCCCCHHHHHHHHHHHHHHHHHHhhcCCCCC--eEecCCCCCCeeeC-CCCcEEEeeeccccccC
Q 005040 503 EFMPNGSLEKWLYSHNYFLDILQRLNIMIDVGSALEYLHHCHSSAP--IIHCDLKPTNILLD-ENMVAHVSDFGISKLLG 579 (717)
Q Consensus 503 e~~~~g~L~~~l~~~~~~~~~~~~~~i~~~i~~~l~~LH~~~~~~~--ivH~dlk~~Nill~-~~~~~kl~Dfgl~~~~~ 579 (717)
|||++|+|.+++.+.+ .+++..+..++.||+.||+||| +++ |+||||||+|||++ .++.+||+|||+|+...
T Consensus 109 Ey~~gg~L~~~l~~~~-~l~~~~~~~~~~qi~~aL~ylH----~~~~~IiHRDlKp~NILl~~~~g~vKl~DFGla~~~~ 183 (290)
T 3fpq_A 109 ELMTSGTLKTYLKRFK-VMKIKVLRSWCRQILKGLQFLH----TRTPPIIHRDLKCDNIFITGPTGSVKIGDLGLATLKR 183 (290)
T ss_dssp ECCCSCBHHHHHHHHS-SCCHHHHHHHHHHHHHHHHHHH----TSSSCCCCCCCCGGGEEESSTTSCEEECCTTGGGGCC
T ss_pred eCCCCCCHHHHHHhcC-CCCHHHHHHHHHHHHHHHHHHH----HCCCCEEecccChhheeEECCCCCEEEEeCcCCEeCC
Confidence 9999999999998754 4899999999999999999999 455 99999999999998 48999999999998643
Q ss_pred CCCCceeeeccccCccccCCCccCCCCcCcccchhhHHHHHHHHHhCCCCCCccccCcchHHHHHHhhCCCchhhhcccc
Q 005040 580 EGEDSVIQTMTMATIGYMAPEYGSEGIVSTKCDVYSYGVLLMETFTEKKPTDEMFTGEMSLRRWVKESLPHRLTEVVDAN 659 (717)
Q Consensus 580 ~~~~~~~~~~~~~t~~y~aPE~~~~~~~~~~~Dvws~G~il~el~tg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 659 (717)
.. .....+||+.|||||++.+ .|+.++|||||||++|||+||+.||.+.... ..+...+...... .
T Consensus 184 ~~----~~~~~~GTp~YmAPE~~~~-~y~~~~DiwSlGvilyelltg~~Pf~~~~~~-~~~~~~i~~~~~~-------~- 249 (290)
T 3fpq_A 184 AS----FAKAVIGTPEFMAPEMYEE-KYDESVDVYAFGMCMLEMATSEYPYSECQNA-AQIYRRVTSGVKP-------A- 249 (290)
T ss_dssp TT----SBEESCSSCCCCCGGGGGT-CCCTHHHHHHHHHHHHHHHHSSCTTTTCSSH-HHHHHHHTTTCCC-------G-
T ss_pred CC----ccCCcccCccccCHHHcCC-CCCcHHHHHHHHHHHHHHHHCCCCCCCCCcH-HHHHHHHHcCCCC-------C-
Confidence 22 1234579999999998865 6999999999999999999999999653211 1111111111000 0
Q ss_pred chhhhhhhhhhHHHHHHHHHHHhhccCCCCCCCCCHHHHHH
Q 005040 660 LVREEQAFSDKMDCLFSIMDLALDCCMDTPHKRIHMTDAAA 700 (717)
Q Consensus 660 ~~~~~~~~~~~~~~~~~l~~li~~cl~~~P~~Rpt~~ev~~ 700 (717)
..+..++.++.++|.+||+.||++|||++|+++
T Consensus 250 --------~~~~~~~~~~~~li~~~L~~dP~~R~s~~e~l~ 282 (290)
T 3fpq_A 250 --------SFDKVAIPEVKEIIEGCIRQNKDERYSIKDLLN 282 (290)
T ss_dssp --------GGGGCCCHHHHHHHHHHSCSSGGGSCCHHHHHT
T ss_pred --------CCCccCCHHHHHHHHHHccCChhHCcCHHHHhc
Confidence 011123456889999999999999999999875
No 13
>3hyh_A Carbon catabolite-derepressing protein kinase; kinase domain, transferase, ATP-binding, carbohydrate metabo kinase, membrane; 2.20A {Saccharomyces cerevisiae} PDB: 3dae_A 2fh9_A 3mn3_A
Probab=100.00 E-value=7.6e-51 Score=407.02 Aligned_cols=245 Identities=25% Similarity=0.395 Sum_probs=191.2
Q ss_pred ccCCccccccccccEEEEEEEec-CCCeEEEEEechhh---HHHHHHHHHHHHHHHhcCCCceeeEeeeeecCCeeEEEE
Q 005040 427 DEFNECNLLGTGGFGSVYKGTLS-DGTNVAIKIFNLQL---ERAFRSFDSECEILRNVRHRNLLKILGSCSNLDFKALVL 502 (717)
Q Consensus 427 ~~~~~~~~lg~G~~g~V~~~~~~-~~~~vavK~~~~~~---~~~~~~~~~e~~~l~~l~hpniv~~~~~~~~~~~~~lv~ 502 (717)
++|++.+.||+|+||+||+|... +|+.||+|++.+.. ....+.+.+|++++++++|||||++++++.+.+..|+||
T Consensus 13 g~Y~i~~~lG~G~fg~V~~~~~~~~~~~vAiK~i~~~~~~~~~~~~~~~~Ei~il~~l~HpnIv~~~~~~~~~~~~~ivm 92 (275)
T 3hyh_A 13 GNYQIVKTLGEGSFGKVKLAYHTTTGQKVALKIINKKVLAKSDMQGRIEREISYLRLLRHPHIIKLYDVIKSKDEIIMVI 92 (275)
T ss_dssp -CCEEEEEEEC---CCEEEEECTTTCCEEEEEEEECC------CHHHHHHHHHHHHHCCCTTBCCEEEEEECSSEEEEEE
T ss_pred eCeEEEEEEecCcCeEEEEEEECCCCCEEEEEEEeHHHcCCHHHHHHHHHHHHHHHHCCCCCCCeEEEEEEECCEEEEEE
Confidence 68999999999999999999975 79999999996543 233467899999999999999999999999999999999
Q ss_pred EccCCCCHHHHHhhCCCCCCHHHHHHHHHHHHHHHHHHhhcCCCCCeEecCCCCCCeeeCCCCcEEEeeeccccccCCCC
Q 005040 503 EFMPNGSLEKWLYSHNYFLDILQRLNIMIDVGSALEYLHHCHSSAPIIHCDLKPTNILLDENMVAHVSDFGISKLLGEGE 582 (717)
Q Consensus 503 e~~~~g~L~~~l~~~~~~~~~~~~~~i~~~i~~~l~~LH~~~~~~~ivH~dlk~~Nill~~~~~~kl~Dfgl~~~~~~~~ 582 (717)
||+ +|+|.+++.+.+ .+++..+..++.|++.||+||| +++|+||||||+|||++.++.+||+|||+|+......
T Consensus 93 Ey~-~g~L~~~l~~~~-~l~e~~~~~~~~qi~~al~ylH----~~~IiHRDiKP~NILl~~~~~vkl~DFGla~~~~~~~ 166 (275)
T 3hyh_A 93 EYA-GNELFDYIVQRD-KMSEQEARRFFQQIISAVEYCH----RHKIVHRDLKPENLLLDEHLNVKIADFGLSNIMTDGN 166 (275)
T ss_dssp ECC-CEEHHHHHHHSC-SCCHHHHHHHHHHHHHHHHHHH----HTTCCCCCCCTTTEEECTTCCEEECCSSCC-------
T ss_pred eCC-CCCHHHHHHHcC-CCCHHHHHHHHHHHHHHHHHHH----HCCcccccCChHHeEECCCCCEEEeecCCCeecCCCC
Confidence 999 689999998765 4999999999999999999999 6899999999999999999999999999998764322
Q ss_pred CceeeeccccCccccCCCccCCCCc-CcccchhhHHHHHHHHHhCCCCCCccccCcchHHHHHHhhCCCchhhhccccch
Q 005040 583 DSVIQTMTMATIGYMAPEYGSEGIV-STKCDVYSYGVLLMETFTEKKPTDEMFTGEMSLRRWVKESLPHRLTEVVDANLV 661 (717)
Q Consensus 583 ~~~~~~~~~~t~~y~aPE~~~~~~~-~~~~Dvws~G~il~el~tg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 661 (717)
.....+||+.|||||++.+..| +.++||||+||++|||+||+.||.+... ..+.+.+.....
T Consensus 167 ---~~~~~~GT~~Y~APE~~~~~~y~~~~~DiwSlGvily~lltg~~PF~~~~~--~~~~~~i~~~~~------------ 229 (275)
T 3hyh_A 167 ---FLKTSCGSPNYAAPEVISGKLYAGPEVDVWSCGVILYVMLCRRLPFDDESI--PVLFKNISNGVY------------ 229 (275)
T ss_dssp -----------CTTSCHHHHSSSSCCCTHHHHHHHHHHHHHHHHSSCSSCCSSH--HHHHHHHHHTCC------------
T ss_pred ---ccCCeeECcccCChhhhcCCCCCCChhhhHHHHHHHHHHHHCCCCCCCCCH--HHHHHHHHcCCC------------
Confidence 2234679999999999988776 5899999999999999999999975311 111111111100
Q ss_pred hhhhhhhhhHHHHHHHHHHHhhccCCCCCCCCCHHHHHH
Q 005040 662 REEQAFSDKMDCLFSIMDLALDCCMDTPHKRIHMTDAAA 700 (717)
Q Consensus 662 ~~~~~~~~~~~~~~~l~~li~~cl~~~P~~Rpt~~ev~~ 700 (717)
.+ +..++.++.+++.+||+.||++|||++|+++
T Consensus 230 ----~~--p~~~s~~~~~li~~~L~~dP~~R~s~~eil~ 262 (275)
T 3hyh_A 230 ----TL--PKFLSPGAAGLIKRMLIVNPLNRISIHEIMQ 262 (275)
T ss_dssp ----CC--CTTSCHHHHHHHHHHSCSSGGGSCCHHHHHH
T ss_pred ----CC--CCCCCHHHHHHHHHHccCChhHCcCHHHHHc
Confidence 00 1123456889999999999999999999987
No 14
>3ubd_A Ribosomal protein S6 kinase alpha-3; kinase-inhibitor complex, induced FIT, transferase-transfera inhibitor complex; HET: SL0; 1.53A {Mus musculus} PDB: 4el9_A* 3g51_A* 2z7q_A* 2z7r_A* 2z7s_A*
Probab=100.00 E-value=1.7e-50 Score=410.03 Aligned_cols=242 Identities=26% Similarity=0.267 Sum_probs=193.3
Q ss_pred ccCCccccccccccEEEEEEEec----CCCeEEEEEechhh--HHHHHHHHHHHHHHHhcCCCceeeEeeeeecCCeeEE
Q 005040 427 DEFNECNLLGTGGFGSVYKGTLS----DGTNVAIKIFNLQL--ERAFRSFDSECEILRNVRHRNLLKILGSCSNLDFKAL 500 (717)
Q Consensus 427 ~~~~~~~~lg~G~~g~V~~~~~~----~~~~vavK~~~~~~--~~~~~~~~~e~~~l~~l~hpniv~~~~~~~~~~~~~l 500 (717)
++|++.+.||+|+||+||+|+.. +++.||+|+++... ......+.+|++++++++|||||++++++.+.+..|+
T Consensus 24 ~~Y~i~~~lG~G~fg~Vy~a~~~~~~~~~~~vAiK~i~~~~~~~~~~~~~~~E~~il~~l~HpnIv~l~~~~~~~~~~~i 103 (304)
T 3ubd_A 24 SQFELLKVLGQGSFGKVFLVKKISGSDARQLYAMKVLKKATLKVRDRVRTKMERDILVEVNHPFIVKLHYAFQTEGKLYL 103 (304)
T ss_dssp GGEEEEEEEECGGGCEEEEEEECSSTTTTCEEEEEEEESEEEEEEECC------CCCCCCCCTTEECEEEEEEETTEEEE
T ss_pred cccEEEEEEecCCCeEEEEEEEccCCCCCEEEEEEEEehHHcChHHHHHHHHHHHHHHHCCCCCCCeEEEEEEECCEEEE
Confidence 57999999999999999999852 47889999986543 1223457789999999999999999999999999999
Q ss_pred EEEccCCCCHHHHHhhCCCCCCHHHHHHHHHHHHHHHHHHhhcCCCCCeEecCCCCCCeeeCCCCcEEEeeeccccccCC
Q 005040 501 VLEFMPNGSLEKWLYSHNYFLDILQRLNIMIDVGSALEYLHHCHSSAPIIHCDLKPTNILLDENMVAHVSDFGISKLLGE 580 (717)
Q Consensus 501 v~e~~~~g~L~~~l~~~~~~~~~~~~~~i~~~i~~~l~~LH~~~~~~~ivH~dlk~~Nill~~~~~~kl~Dfgl~~~~~~ 580 (717)
|||||+||+|.+++.+.+ .+++..+..++.|++.||+||| +++|+||||||+|||++.++.+||+|||+|+....
T Consensus 104 vmEy~~gg~L~~~l~~~~-~l~e~~~~~~~~qi~~aL~ylH----~~~IiHRDlKp~NILl~~~g~vKl~DFGla~~~~~ 178 (304)
T 3ubd_A 104 ILDFLRGGDLFTRLSKEV-MFTEEDVKFYLAELALALDHLH----SLGIIYRDLKPENILLDEEGHIKLTDFGLSKESID 178 (304)
T ss_dssp EECCCTTCEEHHHHHHHC-CCCHHHHHHHHHHHHHHHHHHH----HTTCCCSSCCGGGEEECTTSCEEEESSEEEEC---
T ss_pred EEEcCCCCCHHHHHHhcC-CCCHHHHHHHHHHHHHHHHHHH----HCCCcCCCCCHHHeEEcCCCCEEecccccceeccC
Confidence 999999999999998754 4899999999999999999999 68999999999999999999999999999986543
Q ss_pred CCCceeeeccccCccccCCCccCCCCcCcccchhhHHHHHHHHHhCCCCCCccccCcchHHHHHHhhCCCchhhhccccc
Q 005040 581 GEDSVIQTMTMATIGYMAPEYGSEGIVSTKCDVYSYGVLLMETFTEKKPTDEMFTGEMSLRRWVKESLPHRLTEVVDANL 660 (717)
Q Consensus 581 ~~~~~~~~~~~~t~~y~aPE~~~~~~~~~~~Dvws~G~il~el~tg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 660 (717)
... .....+||+.|||||++.+..|+.++||||+||++|||+||+.||.+... ......+.....
T Consensus 179 ~~~--~~~~~~GT~~YmAPE~~~~~~y~~~~DiwSlGvilyemltG~~PF~~~~~--~~~~~~i~~~~~----------- 243 (304)
T 3ubd_A 179 HEK--KAYSFCGTVEYMAPEVVNRRGHTQSADWWSFGVLMFEMLTGTLPFQGKDR--KETMTMILKAKL----------- 243 (304)
T ss_dssp --C--CCCSCCCCGGGCCHHHHHTSCCCTHHHHHHHHHHHHHHHHSSCSSCCSSH--HHHHHHHHHCCC-----------
T ss_pred CCc--cccccccCcccCCHHHhccCCCCCCCcccchHHHHHHHHhCCCCCCCcCH--HHHHHHHHcCCC-----------
Confidence 221 22446799999999999999999999999999999999999999976321 111111111100
Q ss_pred hhhhhhhhhhHHHHHHHHHHHhhccCCCCCCCCCH
Q 005040 661 VREEQAFSDKMDCLFSIMDLALDCCMDTPHKRIHM 695 (717)
Q Consensus 661 ~~~~~~~~~~~~~~~~l~~li~~cl~~~P~~Rpt~ 695 (717)
..+..++.++.+++.+||+.||++|||+
T Consensus 244 -------~~p~~~s~~~~~li~~~L~~dP~~R~ta 271 (304)
T 3ubd_A 244 -------GMPQFLSPEAQSLLRMLFKRNPANRLGA 271 (304)
T ss_dssp -------CCCTTSCHHHHHHHHHHTCSSGGGSTTC
T ss_pred -------CCCCcCCHHHHHHHHHHcccCHHHCCCC
Confidence 0011345668899999999999999985
No 15
>4g31_A Eukaryotic translation initiation factor 2-alpha; deletion mutant, catalytic domain, synthetic inhibitor, TRAN transferase inhibitor complex; HET: 0WH; 2.28A {Homo sapiens} PDB: 4g34_A*
Probab=100.00 E-value=7.2e-49 Score=400.40 Aligned_cols=249 Identities=24% Similarity=0.374 Sum_probs=188.5
Q ss_pred ccCCccccccccccEEEEEEEec-CCCeEEEEEechhh-HHHHHHHHHHHHHHHhcCCCceeeEeeeeecCC--------
Q 005040 427 DEFNECNLLGTGGFGSVYKGTLS-DGTNVAIKIFNLQL-ERAFRSFDSECEILRNVRHRNLLKILGSCSNLD-------- 496 (717)
Q Consensus 427 ~~~~~~~~lg~G~~g~V~~~~~~-~~~~vavK~~~~~~-~~~~~~~~~e~~~l~~l~hpniv~~~~~~~~~~-------- 496 (717)
++|++.+.||+|+||+||+|+++ +|+.||||+++... ....+.+.+|++++++++|||||++++++.+.+
T Consensus 5 ~dy~~~~~lG~G~fg~V~~a~~~~~~~~vAiK~i~~~~~~~~~~~~~~E~~il~~l~HpnIV~~~~~~~~~~~~~~~~~~ 84 (299)
T 4g31_A 5 TDFEPIQCLGRGGFGVVFEAKNKVDDCNYAIKRIRLPNRELAREKVMREVKALAKLEHPGIVRYFNAWLEKNTTEKLQPS 84 (299)
T ss_dssp HHEEEEEEEEECC--EEEEEEETTTCCEEEEEEEEECSSHHHHHHHHHHHHHHTTCCCTTBCCEEEEEEEEC--------
T ss_pred hhCEEeeEEecCCCeEEEEEEECCCCCEEEEEEEeccCCHHHHHHHHHHHHHHHhCCCCCCCeEEEEEEecCcccccccc
Confidence 57999999999999999999975 79999999986543 334567899999999999999999999986543
Q ss_pred ----eeEEEEEccCCCCHHHHHhhCCC--CCCHHHHHHHHHHHHHHHHHHhhcCCCCCeEecCCCCCCeeeCCCCcEEEe
Q 005040 497 ----FKALVLEFMPNGSLEKWLYSHNY--FLDILQRLNIMIDVGSALEYLHHCHSSAPIIHCDLKPTNILLDENMVAHVS 570 (717)
Q Consensus 497 ----~~~lv~e~~~~g~L~~~l~~~~~--~~~~~~~~~i~~~i~~~l~~LH~~~~~~~ivH~dlk~~Nill~~~~~~kl~ 570 (717)
..|+|||||++|+|.+++..... ..++..+..++.||++||+||| +++|+||||||+|||++.++.+||+
T Consensus 85 ~~~~~l~ivmE~~~gg~L~~~l~~~~~~~~~~~~~~~~i~~qi~~al~ylH----~~~IiHRDlKp~NILl~~~~~vKl~ 160 (299)
T 4g31_A 85 SPKVYLYIQMQLCRKENLKDWMNGRCTIEERERSVCLHIFLQIAEAVEFLH----SKGLMHRDLKPSNIFFTMDDVVKVG 160 (299)
T ss_dssp --CEEEEEEEECCCSCCHHHHHHTCCSGGGSCHHHHHHHHHHHHHHHHHHH----HTTCCCCCCCGGGEEECTTCCEEEC
T ss_pred CCCcEEEEEEecCCCCcHHHHHHhcCCCChhHHHHHHHHHHHHHHHHHHHH----HCcCccccCcHHHeEECCCCcEEEc
Confidence 46999999999999999986542 3566778899999999999999 6799999999999999999999999
Q ss_pred eeccccccCCCCCc----------eeeeccccCccccCCCccCCCCcCcccchhhHHHHHHHHHhCCCCCCccccCcchH
Q 005040 571 DFGISKLLGEGEDS----------VIQTMTMATIGYMAPEYGSEGIVSTKCDVYSYGVLLMETFTEKKPTDEMFTGEMSL 640 (717)
Q Consensus 571 Dfgl~~~~~~~~~~----------~~~~~~~~t~~y~aPE~~~~~~~~~~~Dvws~G~il~el~tg~~p~~~~~~~~~~~ 640 (717)
|||+|+.+...... ......+||+.|||||++.+..|+.++||||+||++|||++ ||.... ..
T Consensus 161 DFGla~~~~~~~~~~~~~~~~~~~~~~~~~~GT~~YmAPE~~~~~~y~~~~DiwSlGvilyell~---Pf~~~~----~~ 233 (299)
T 4g31_A 161 DFGLVTAMDQDEEEQTVLTPMPAYARHTGQVGTKLYMSPEQIHGNSYSHKVDIFSLGLILFELLY---PFSTQM----ER 233 (299)
T ss_dssp CCCCC--------------------------CCCTTSCHHHHTTCCCCTHHHHHHHHHHHHHHHS---CCSSHH----HH
T ss_pred cCccceecCCCccccccccccccccccCCcccCccccCHHHHcCCCCCCHHHHHHHHHHHHHHcc---CCCCcc----HH
Confidence 99999877543221 11234579999999999999999999999999999999996 775321 11
Q ss_pred HHHHHhhCCCchhhhccccchhhhhhhhhhHHHHHHHHHHHhhccCCCCCCCCCHHHHHH
Q 005040 641 RRWVKESLPHRLTEVVDANLVREEQAFSDKMDCLFSIMDLALDCCMDTPHKRIHMTDAAA 700 (717)
Q Consensus 641 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~cl~~~P~~Rpt~~ev~~ 700 (717)
...... +....+. +...+..+.+.+++.+||+.||++|||+.|+++
T Consensus 234 ~~~~~~--------~~~~~~p------~~~~~~~~~~~~li~~~L~~dP~~Rps~~eil~ 279 (299)
T 4g31_A 234 VRTLTD--------VRNLKFP------PLFTQKYPCEYVMVQDMLSPSPMERPEAINIIE 279 (299)
T ss_dssp HHHHHH--------HHTTCCC------HHHHHHCHHHHHHHHHHTCSSGGGSCCHHHHHT
T ss_pred HHHHHH--------HhcCCCC------CCCcccCHHHHHHHHHHcCCChhHCcCHHHHhc
Confidence 111111 0011111 011223345678999999999999999999986
No 16
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=100.00 E-value=6.8e-46 Score=431.74 Aligned_cols=359 Identities=33% Similarity=0.564 Sum_probs=309.1
Q ss_pred CCCCccccCCCCCcEEECCCCcceecCCcC-CCCCCCCCEEEcccccccC-ccCCcccc----------------ccccc
Q 005040 2 GTIPNSITNATKLIGLDLGLNSFSGHIPNT-FGNLRHLSVLSLMMNNLTT-ESSSADQW----------------SFLSS 63 (717)
Q Consensus 2 ~~iP~~~~~l~~L~~L~L~~n~i~~~~~~~-~~~l~~L~~L~L~~n~l~~-~~~~~~~~----------------~~~~~ 63 (717)
+.+|..|.++++|++|+|++|.+++.+|.. |.++++|++|+|++|+++. ++...... ..+..
T Consensus 308 ~~~p~~~~~l~~L~~L~L~~n~l~~~ip~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~~L~~L~Ls~N~l~~~~~~~ 387 (768)
T 3rgz_A 308 GAVPPFFGSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPN 387 (768)
T ss_dssp ECCCGGGGGCTTCCEEECCSSEEEEECCHHHHTTCTTCCEEECCSSEEEECCCTTHHHHTTTCSEEECCSSEEEEECCTT
T ss_pred CccchHHhcCCCccEEECCCCcccCcCCHHHHhcCCCCCEEeCcCCccCccccHHHHhhhcCCcEEEccCCCcCCCcChh
Confidence 367888888888888888888888777765 8888888888888888873 33221111 01222
Q ss_pred ccC--ccCCcEEeccCCCCcccCCcchhccccccceeeecCCcceecCCccccCCCCCcEEEccCCCCcccCCccccccC
Q 005040 64 LTN--CRNLANLALASNPLGGILPPLIGNFSASLQNIYAFECKLGGSIPKEIGNLRGLIVLSLGFNDLNGTIPTSIGTLQ 141 (717)
Q Consensus 64 l~~--l~~L~~L~L~~N~l~~~~~~~~~~l~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~ 141 (717)
+.. +++|++|+|++|.+++..|..+..+ ++|++|++++|++.+.+|..+.++++|++|+|++|.+++.+|..+..++
T Consensus 388 ~~~~~~~~L~~L~L~~n~l~~~~p~~l~~l-~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~ 466 (768)
T 3rgz_A 388 LCQNPKNTLQELYLQNNGFTGKIPPTLSNC-SELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVK 466 (768)
T ss_dssp TTCSTTCCCCEEECCSSEEEEECCGGGGGC-TTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCT
T ss_pred hhhcccCCccEEECCCCccccccCHHHhcC-CCCCEEECcCCcccCcccHHHhcCCCCCEEECCCCcccCcCCHHHcCCC
Confidence 333 6778888888888888888888887 6799999999999989999999999999999999999988999999999
Q ss_pred CCCEEeccCCcccccCCccccCCCCCCEEeccCCcCcccCCccccCCCCCCeEEecCccccCCCChhhhcccCCCeEEcc
Q 005040 142 QLQGFYVPENNLQGYVPHDLCHLERLNILNLSGNKLSGAIPQCLASLTSLRSLYLQSNKLSSSLPSSLWSLEYILRINLS 221 (717)
Q Consensus 142 ~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~ 221 (717)
+|++|++++|++++..|..+.++++|++|+|++|++++.+|..++.+++|+.|+|++|++++.+|..+..+++|+.|+++
T Consensus 467 ~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls 546 (768)
T 3rgz_A 467 TLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLN 546 (768)
T ss_dssp TCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEEECCGGGGGCTTCCEEECC
T ss_pred CceEEEecCCcccCcCCHHHhcCCCCCEEEccCCccCCcCChHHhcCCCCCEEECCCCcccCcCCHHHcCCCCCCEEECC
Confidence 99999999999998899999999999999999999998999999999999999999999998999999999999999999
Q ss_pred CCcCcccCCcc---------------------------------------------------------------------
Q 005040 222 SNSLKGTLPSN--------------------------------------------------------------------- 232 (717)
Q Consensus 222 ~N~l~~~~~~~--------------------------------------------------------------------- 232 (717)
+|.+++.+|..
T Consensus 547 ~N~l~g~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~g~~~~ 626 (768)
T 3rgz_A 547 TNLFNGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSP 626 (768)
T ss_dssp SSEEESBCCGGGGTTTTCBCCSTTCSCEEEEEECCSCCTTCCSSEEEEECTTCCGGGGGGGGGTCCSCTTSCEEEEECCC
T ss_pred CCccCCcCChHHhcccchhhhhccccccccccccccccccccccccccccccccchhhhccccccccccccceecccCch
Confidence 99988766653
Q ss_pred -ccCCCCCCeEEccCCCCCCCCcccccCCcccccccccCccccCCCCccccccCccceEeccCCCCCCCCcccccccccc
Q 005040 233 -IQKLNVLIDLDLSRNQLSSDIPSTIGTLKNLETLSLAGNQFQGPIPESVGNLISLESLDFSNNNLSGKIPKSLEALSHL 311 (717)
Q Consensus 233 -~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~~~~~~~~~~l~~L 311 (717)
+..+++|+.|||++|.+++.+|..++.+++|+.|+|++|++++.+|..++++++|+.|+|++|++++.+|..+..+++|
T Consensus 627 ~~~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~l~~L~~L~~LdLs~N~l~g~ip~~l~~l~~L 706 (768)
T 3rgz_A 627 TFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTML 706 (768)
T ss_dssp SCSSSBCCCEEECCSSCCBSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEECCCGGGGGCCCC
T ss_pred hhhccccccEEECcCCcccccCCHHHhccccCCEEeCcCCccCCCCChHHhCCCCCCEEECCCCcccCcCChHHhCCCCC
Confidence 3345789999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cEEEccCCcccccccccccccccccccccCCccccCCCCCCCCCCCCCCccCc
Q 005040 312 KQFNVSHNRLEGEIPVKGSFKDFSAQSYFGNYALCGPPRLQVPPCKQDNRKRT 364 (717)
Q Consensus 312 ~~L~l~~N~l~~~~p~~~~~~~~~~~~~~~n~~~c~~~~~~~~~c~~~~~~~~ 364 (717)
+.|++++|+++|.+|..+.+..+....+.||+++||+|. ++|........
T Consensus 707 ~~L~ls~N~l~g~iP~~~~~~~~~~~~~~gN~~Lcg~~l---~~C~~~~~~~~ 756 (768)
T 3rgz_A 707 TEIDLSNNNLSGPIPEMGQFETFPPAKFLNNPGLCGYPL---PRCDPSNADGY 756 (768)
T ss_dssp SEEECCSSEEEEECCSSSSGGGSCGGGGCSCTEEESTTS---CCCCSCC----
T ss_pred CEEECcCCcccccCCCchhhccCCHHHhcCCchhcCCCC---cCCCCCccCCC
Confidence 999999999999999999999999999999999999874 37876654443
No 17
>4b99_A Mitogen-activated protein kinase 7; transferase, inhibitor; HET: R4L; 2.80A {Homo sapiens}
Probab=100.00 E-value=1.7e-46 Score=397.56 Aligned_cols=267 Identities=23% Similarity=0.255 Sum_probs=201.4
Q ss_pred ccCCccccccccccEEEEEEEec-CCCeEEEEEechhh--HHHHHHHHHHHHHHHhcCCCceeeEeeeeec------CCe
Q 005040 427 DEFNECNLLGTGGFGSVYKGTLS-DGTNVAIKIFNLQL--ERAFRSFDSECEILRNVRHRNLLKILGSCSN------LDF 497 (717)
Q Consensus 427 ~~~~~~~~lg~G~~g~V~~~~~~-~~~~vavK~~~~~~--~~~~~~~~~e~~~l~~l~hpniv~~~~~~~~------~~~ 497 (717)
++|++.+.||+|+||+||+|.+. +|+.||||+++... ....+.+.+|+++|++++|||||++++++.. .+.
T Consensus 54 ~~Y~~~~~lG~G~fG~V~~a~~~~t~~~vAiK~i~~~~~~~~~~~~~~~Ei~il~~l~HpnIv~l~~~~~~~~~~~~~~~ 133 (398)
T 4b99_A 54 DEYEIIETIGNGAYGVVSSARRRLTGQQVAIKKIPNAFDVVTNAKRTLRELKILKHFKHDNIIAIKDILRPTVPYGEFKS 133 (398)
T ss_dssp SSEEEEEEEEECSSCEEEEEEETTTCCEEEEEEETTTTSSHHHHHHHHHHHHHHHHCCCTTBCCEEEECCCSSCTTTCCC
T ss_pred CCeEEEEEEecccCeEEEEEEECCCCCEEEEEEECccccchHHHHHHHHHHHHHHhcCCCCcceEeeeeecccccccCCE
Confidence 57999999999999999999975 79999999997543 3345678899999999999999999998753 467
Q ss_pred eEEEEEccCCCCHHHHHhhCCCCCCHHHHHHHHHHHHHHHHHHhhcCCCCCeEecCCCCCCeeeCCCCcEEEeeeccccc
Q 005040 498 KALVLEFMPNGSLEKWLYSHNYFLDILQRLNIMIDVGSALEYLHHCHSSAPIIHCDLKPTNILLDENMVAHVSDFGISKL 577 (717)
Q Consensus 498 ~~lv~e~~~~g~L~~~l~~~~~~~~~~~~~~i~~~i~~~l~~LH~~~~~~~ivH~dlk~~Nill~~~~~~kl~Dfgl~~~ 577 (717)
.|+|||||+ |+|.+++...+ .+++..+..++.||+.||.||| +++|+||||||+|||++.++.+||+|||+|+.
T Consensus 134 ~~ivmE~~~-g~L~~~i~~~~-~l~~~~~~~~~~qil~al~ylH----~~~iiHRDlKP~NIl~~~~~~~Ki~DFGla~~ 207 (398)
T 4b99_A 134 VYVVLDLME-SDLHQIIHSSQ-PLTLEHVRYFLYQLLRGLKYMH----SAQVIHRDLKPSNLLVNENCELKIGDFGMARG 207 (398)
T ss_dssp EEEEEECCS-EEHHHHHTSSS-CCCHHHHHHHHHHHHHHHHHHH----HTTCBCCCCCGGGEEECTTCCEEECCCTTCBC
T ss_pred EEEEEeCCC-CCHHHHHHhcC-CCCHHHHHHHHHHHHHHHHHHH----HCcCcCCCcCccccccCCCCCEEEeecceeee
Confidence 899999996 68999998654 4999999999999999999999 68999999999999999999999999999987
Q ss_pred cCCCCC--ceeeeccccCccccCCCccCCC-CcCcccchhhHHHHHHHHHhCCCCCCccccCcchHHHHHHhhCCCc--h
Q 005040 578 LGEGED--SVIQTMTMATIGYMAPEYGSEG-IVSTKCDVYSYGVLLMETFTEKKPTDEMFTGEMSLRRWVKESLPHR--L 652 (717)
Q Consensus 578 ~~~~~~--~~~~~~~~~t~~y~aPE~~~~~-~~~~~~Dvws~G~il~el~tg~~p~~~~~~~~~~~~~~~~~~~~~~--~ 652 (717)
+..... .......+||+.|||||++.+. .++.++||||+||++|||++|+.||.+.... ..+........... .
T Consensus 208 ~~~~~~~~~~~~~~~~GT~~Y~APEv~~~~~~~~~~~DiWSlG~il~ell~G~~pF~g~~~~-~~l~~I~~~~g~p~~~~ 286 (398)
T 4b99_A 208 LCTSPAEHQYFMTEYVATRWYRAPELMLSLHEYTQAIDLWSVGCIFGEMLARRQLFPGKNYV-HQLQLIMMVLGTPSPAV 286 (398)
T ss_dssp C-------CCCCCSSCCCCTTCCHHHHTTCSCCCTHHHHHHHHHHHHHHHHTSCSSCCSSHH-HHHHHHHHHHCCCCGGG
T ss_pred cccCccccccccccceeChHhcCHHHhcCCCCCCChhheehhHHHHHHHHHCCCCCCCCCHH-HHHHHHHHhcCCCChHH
Confidence 643221 1223456899999999987764 5799999999999999999999999763211 11222111111110 0
Q ss_pred -hhhccccchhhhhhh---------hhhHHHHHHHHHHHhhccCCCCCCCCCHHHHHH
Q 005040 653 -TEVVDANLVREEQAF---------SDKMDCLFSIMDLALDCCMDTPHKRIHMTDAAA 700 (717)
Q Consensus 653 -~~~~~~~~~~~~~~~---------~~~~~~~~~l~~li~~cl~~~P~~Rpt~~ev~~ 700 (717)
............... ......+.++.+|+.+||..||++|||++|+++
T Consensus 287 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~dLl~~mL~~dP~~R~ta~e~L~ 344 (398)
T 4b99_A 287 IQAVGAERVRAYIQSLPPRQPVPWETVYPGADRQALSLLGRMLRFEPSARISAAAALR 344 (398)
T ss_dssp TC-----CHHHHHHSSCCCCCCCHHHHSTTCCHHHHHHHHHHSCSSTTTSCCHHHHTT
T ss_pred hhhhhhhhhhhhhhcCCCcCCCCHHHhCCCCCHHHHHHHHHHCcCChhHCcCHHHHhc
Confidence 000000000000000 000123467889999999999999999999886
No 18
>4f9c_A Cell division cycle 7-related protein kinase; Ser/Thr protein kinase, transferase, phosphorylation, cell C cell division, mitosis, S phase; HET: 0SX; 2.08A {Homo sapiens} PDB: 4f99_A* 4f9b_A* 4f9a_A*
Probab=100.00 E-value=3.1e-46 Score=391.52 Aligned_cols=266 Identities=20% Similarity=0.243 Sum_probs=199.2
Q ss_pred HhccCCccccccccccEEEEEEEec----CCCeEEEEEechhhHHHHHHHHHHHHHHHhc-CCCceeeEeeeeecCCeeE
Q 005040 425 ATDEFNECNLLGTGGFGSVYKGTLS----DGTNVAIKIFNLQLERAFRSFDSECEILRNV-RHRNLLKILGSCSNLDFKA 499 (717)
Q Consensus 425 ~~~~~~~~~~lg~G~~g~V~~~~~~----~~~~vavK~~~~~~~~~~~~~~~e~~~l~~l-~hpniv~~~~~~~~~~~~~ 499 (717)
..++|++.+.||+|+||+||+|+.+ +++.||+|++..... ...+.+|+++++.+ +||||+++++++.+.++.|
T Consensus 19 l~~~Y~i~~~lG~G~fg~Vy~a~~~~~~~~~~~vAiK~i~~~~~--~~~~~~E~~~l~~~~~h~nIv~l~~~~~~~~~~~ 96 (361)
T 4f9c_A 19 LSNVFKIEDKIGEGTFSSVYLATAQLQVGPEEKIALKHLIPTSH--PIRIAAELQCLTVAGGQDNVMGVKYCFRKNDHVV 96 (361)
T ss_dssp GGGTCEEEEEEEECSSEEEEEEEEEBTTSCEEEEEEEEECTTSC--HHHHHHHHHHHHHTCSBTTBCCCSEEEEETTEEE
T ss_pred ccCcEEEEEEEecccCcEEEEEEEcccCCCCCEEEEEEEccccC--HHHHHHHHHHHHHhcCCCCCceEEEEEEECCEEE
Confidence 4578999999999999999999853 467899998865432 24577899999998 6999999999999999999
Q ss_pred EEEEccCCCCHHHHHhhCCCCCCHHHHHHHHHHHHHHHHHHhhcCCCCCeEecCCCCCCeeeCCC-CcEEEeeecccccc
Q 005040 500 LVLEFMPNGSLEKWLYSHNYFLDILQRLNIMIDVGSALEYLHHCHSSAPIIHCDLKPTNILLDEN-MVAHVSDFGISKLL 578 (717)
Q Consensus 500 lv~e~~~~g~L~~~l~~~~~~~~~~~~~~i~~~i~~~l~~LH~~~~~~~ivH~dlk~~Nill~~~-~~~kl~Dfgl~~~~ 578 (717)
+||||+++|+|.++++. +++..+..++.|++.||+||| +++|+||||||+|||++.+ +.+||+|||+|+..
T Consensus 97 lvmE~~~g~~L~~~~~~----l~~~~~~~~~~qll~al~ylH----~~gIiHRDiKPeNiLl~~~~~~~kl~DFGla~~~ 168 (361)
T 4f9c_A 97 IAMPYLEHESFLDILNS----LSFQEVREYMLNLFKALKRIH----QFGIVHRDVKPSNFLYNRRLKKYALVDFGLAQGT 168 (361)
T ss_dssp EEEECCCCCCHHHHHTT----CCHHHHHHHHHHHHHHHHHHH----HTTEECSCCSGGGEEEETTTTEEEECCCTTCEEC
T ss_pred EEEeCCCcccHHHHHcC----CCHHHHHHHHHHHHHHHHHHH----HCCeEeCcCCHHHeEEeCCCCeEEECcCCCCccc
Confidence 99999999999999853 899999999999999999999 6899999999999999876 79999999999865
Q ss_pred CCCCCc--------------------------eeeeccccCccccCCCccCCC-CcCcccchhhHHHHHHHHHhCCCCCC
Q 005040 579 GEGEDS--------------------------VIQTMTMATIGYMAPEYGSEG-IVSTKCDVYSYGVLLMETFTEKKPTD 631 (717)
Q Consensus 579 ~~~~~~--------------------------~~~~~~~~t~~y~aPE~~~~~-~~~~~~Dvws~G~il~el~tg~~p~~ 631 (717)
...... ......+||++|+|||++.+. .|+.++||||+||++|||++|+.||.
T Consensus 169 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~GT~~Y~APE~l~~~~~y~~~~DiWSlG~il~ell~G~~Pf~ 248 (361)
T 4f9c_A 169 HDTKIELLKFVQSEAQQERCSQNKCSICLSRRQQVAPRAGTPGFRAPEVLTKCPNQTTAIDMWSAGVIFLSLLSGRYPFY 248 (361)
T ss_dssp TTCSCGGGGGC--------------------------CCCCGGGCCHHHHTTCSCCCTHHHHHHHHHHHHHHHHTCSSSS
T ss_pred CCccccccccccccccccccccccccccccccccccccccCccccCHHHHcCCCCCCCccchhhhHHHHHHHHHCCCCCC
Confidence 432110 112334799999999988765 58999999999999999999999995
Q ss_pred ccccCcchHHHHHHhhC---------------------CC-chhhhcc------c---cc----hhhhhhhhhhHHHHHH
Q 005040 632 EMFTGEMSLRRWVKESL---------------------PH-RLTEVVD------A---NL----VREEQAFSDKMDCLFS 676 (717)
Q Consensus 632 ~~~~~~~~~~~~~~~~~---------------------~~-~~~~~~~------~---~~----~~~~~~~~~~~~~~~~ 676 (717)
...+....+........ +. ....... . .. .............+.+
T Consensus 249 ~~~~~~~~l~~I~~~~G~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~is~~ 328 (361)
T 4f9c_A 249 KASDDLTALAQIMTIRGSRETIQAAKTFGKSILCSKEVPAQDLRKLCERLRGMDSSTPKLTSDIQGHATNLEGWNEVPDE 328 (361)
T ss_dssp CCSSHHHHHHHHHHHHCHHHHHHHHHHTTEEEEESSCCCCCCHHHHHHHHC----------------------CTTCCHH
T ss_pred CCCCHHHHHHHHHHhcCCccchhhhhhccccccccccCcchhhhHHHHhhccccccccccccccccccccccccccCCHH
Confidence 43322222222111000 00 0000000 0 00 0000001111234567
Q ss_pred HHHHHhhccCCCCCCCCCHHHHHH
Q 005040 677 IMDLALDCCMDTPHKRIHMTDAAA 700 (717)
Q Consensus 677 l~~li~~cl~~~P~~Rpt~~ev~~ 700 (717)
+.+|+.+||..||++|||++|+++
T Consensus 329 a~DLl~~lL~~dP~~R~ta~eaL~ 352 (361)
T 4f9c_A 329 AYDLLDKLLDLNPASRITAEEALL 352 (361)
T ss_dssp HHHHHHHHTCSCTTTSCCHHHHHT
T ss_pred HHHHHHHHCcCChhHCcCHHHHhc
Confidence 899999999999999999999875
No 19
>3v5w_A G-protein coupled receptor kinase 2; inhibitor complex, protein kinase, beta propeller, RGS homol domain; HET: 8PR; 2.07A {Homo sapiens} PDB: 3cik_A* 3krw_A* 3krx_A* 1omw_A 1ym7_A 2bcj_A* 3uzs_A 3uzt_A 3pvu_A* 3psc_A* 3pvw_A* 1bak_A
Probab=100.00 E-value=4.8e-45 Score=401.58 Aligned_cols=248 Identities=20% Similarity=0.267 Sum_probs=200.2
Q ss_pred hccCCccccccccccEEEEEEEec-CCCeEEEEEechhh---HHHHHHHH---HHHHHHHhcCCCceeeEeeeeecCCee
Q 005040 426 TDEFNECNLLGTGGFGSVYKGTLS-DGTNVAIKIFNLQL---ERAFRSFD---SECEILRNVRHRNLLKILGSCSNLDFK 498 (717)
Q Consensus 426 ~~~~~~~~~lg~G~~g~V~~~~~~-~~~~vavK~~~~~~---~~~~~~~~---~e~~~l~~l~hpniv~~~~~~~~~~~~ 498 (717)
.++|++.+.||+|+||.||+|+.+ +|+.||+|++.+.. ......+. .++.+++.++|||||++++++.+.+.+
T Consensus 188 lddf~i~k~LG~G~fG~V~la~~~~tg~~~AiK~i~K~~i~~~~~~~~~~~E~~~l~ll~~~~HP~IV~l~~~f~~~~~l 267 (689)
T 3v5w_A 188 MNDFSVHRIIGRGGFGEVYGCRKADTGKMYAMKCLDKKRIKMKQGETLALNERIMLSLVSTGDCPFIVCMSYAFHTPDKL 267 (689)
T ss_dssp GGGEEEEEEEEECSSEEEEEEEETTTCCEEEEEEEEHHHHHHTTCHHHHHHHHHHHHHHSSSCCTTBCCEEEEEECSSEE
T ss_pred hHHeEEEEEEecccCeEEEEEEECCCCCEEEEEEEeHHHcchhhhHHHHHHHHHHHHHHhhCCCCCEeEEEEEEEECCEE
Confidence 368999999999999999999976 79999999997553 11122233 346677778999999999999999999
Q ss_pred EEEEEccCCCCHHHHHhhCCCCCCHHHHHHHHHHHHHHHHHHhhcCCCCCeEecCCCCCCeeeCCCCcEEEeeecccccc
Q 005040 499 ALVLEFMPNGSLEKWLYSHNYFLDILQRLNIMIDVGSALEYLHHCHSSAPIIHCDLKPTNILLDENMVAHVSDFGISKLL 578 (717)
Q Consensus 499 ~lv~e~~~~g~L~~~l~~~~~~~~~~~~~~i~~~i~~~l~~LH~~~~~~~ivH~dlk~~Nill~~~~~~kl~Dfgl~~~~ 578 (717)
|+|||||+||+|.+++.+.+ .+++..+..++.||+.||+||| +++||||||||+|||++.+|++||+|||+|+.+
T Consensus 268 ylVmEy~~GGdL~~~l~~~~-~l~E~~a~~y~~qIl~aL~yLH----~~gIiHRDLKPeNILld~~G~vKL~DFGlA~~~ 342 (689)
T 3v5w_A 268 SFILDLMNGGDLHYHLSQHG-VFSEADMRFYAAEIILGLEHMH----NRFVVYRDLKPANILLDEHGHVRISDLGLACDF 342 (689)
T ss_dssp EEEECCCCSCBHHHHHHHHC-CCCHHHHHHHHHHHHHHHHHHH----TTTEECCCCSGGGEEECTTSCEEECCCTTCEEC
T ss_pred EEEEecCCCCcHHHHHHhcC-CCCHHHHHHHHHHHHHHHHHHH----HCCccccCCchHHeEEeCCCCEEecccceeeec
Confidence 99999999999999998764 3899999999999999999999 789999999999999999999999999999877
Q ss_pred CCCCCceeeeccccCccccCCCccCC-CCcCcccchhhHHHHHHHHHhCCCCCCccccCcc-hHHHHHHhhCCCchhhhc
Q 005040 579 GEGEDSVIQTMTMATIGYMAPEYGSE-GIVSTKCDVYSYGVLLMETFTEKKPTDEMFTGEM-SLRRWVKESLPHRLTEVV 656 (717)
Q Consensus 579 ~~~~~~~~~~~~~~t~~y~aPE~~~~-~~~~~~~Dvws~G~il~el~tg~~p~~~~~~~~~-~~~~~~~~~~~~~~~~~~ 656 (717)
.... ....+||+.|||||++.+ ..|+.++||||+||++|||++|+.||.+...... .+.+.+... +.
T Consensus 343 ~~~~----~~t~~GTp~YmAPEvl~~~~~y~~~vDiWSLGvilYEmLtG~~PF~~~~~~~~~~i~~~i~~~-~~------ 411 (689)
T 3v5w_A 343 SKKK----PHASVGTHGYMAPEVLQKGVAYDSSADWFSLGCMLFKLLRGHSPFRQHKTKDKHEIDRMTLTM-AV------ 411 (689)
T ss_dssp SSCC----CCSCCSCGGGCCHHHHSTTCCCCTHHHHHHHHHHHHHHHHSSCTTCGGGCCCHHHHHHHHHHC-CC------
T ss_pred CCCC----CCCccCCcCccCHHHHhCCCCCCcHHHHHHHHHHHHHHHhCCCCCCCCChHHHHHHHHhhcCC-CC------
Confidence 5432 234589999999999864 5799999999999999999999999976332221 111111110 00
Q ss_pred cccchhhhhhhhhhHHHHHHHHHHHhhccCCCCCCCCC-----HHHHHH
Q 005040 657 DANLVREEQAFSDKMDCLFSIMDLALDCCMDTPHKRIH-----MTDAAA 700 (717)
Q Consensus 657 ~~~~~~~~~~~~~~~~~~~~l~~li~~cl~~~P~~Rpt-----~~ev~~ 700 (717)
..+..++.++.+||.+||..||++|++ ++|+++
T Consensus 412 -----------~~p~~~S~~a~dLI~~lL~~dP~~Rl~~~~~ga~ei~~ 449 (689)
T 3v5w_A 412 -----------ELPDSFSPELRSLLEGLLQRDVNRRLGCLGRGAQEVKE 449 (689)
T ss_dssp -----------CCCTTSCHHHHHHHHHHTCSCGGGCTTCSSSTHHHHTT
T ss_pred -----------CCCccCCHHHHHHHHHHccCCHhHCCCCCCCCHHHHhc
Confidence 011134566889999999999999998 677654
No 20
>3uto_A Twitchin; kinase, muscle sarcomere, transferase; HET: FLC P33; 2.40A {Caenorhabditis elegans} PDB: 1koa_A
Probab=100.00 E-value=4.7e-45 Score=405.94 Aligned_cols=252 Identities=23% Similarity=0.269 Sum_probs=210.4
Q ss_pred hccCCccccccccccEEEEEEEec-CCCeEEEEEechhhHHHHHHHHHHHHHHHhcCCCceeeEeeeeecCCeeEEEEEc
Q 005040 426 TDEFNECNLLGTGGFGSVYKGTLS-DGTNVAIKIFNLQLERAFRSFDSECEILRNVRHRNLLKILGSCSNLDFKALVLEF 504 (717)
Q Consensus 426 ~~~~~~~~~lg~G~~g~V~~~~~~-~~~~vavK~~~~~~~~~~~~~~~e~~~l~~l~hpniv~~~~~~~~~~~~~lv~e~ 504 (717)
.++|++.+.||+|+||.||+|..+ +|+.||+|++........+.+.+|+++|+.++|||||++++++.+....|+||||
T Consensus 156 l~~Y~i~~~lG~G~fg~V~~~~~~~tg~~~AiK~i~~~~~~~~~~~~~Ei~il~~l~hpnIv~l~~~~~~~~~~~iv~E~ 235 (573)
T 3uto_A 156 LDHYDIHEELGTGAFGVVHRVTERATGNNFAAKFVMTPHESDKETVRKEIQTMSVLRHPTLVNLHDAFEDDNEMVMIYEF 235 (573)
T ss_dssp GGTEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEECCSHHHHHHHHHHHHHHHHTCCTTBCCEEEEEECSSEEEEEEEC
T ss_pred ccccEEEEEEeeccCeEEEEEEECCCCCEEEEEEEeccchhhHHHHHHHHHHHHhCCCCCCCeEEEEEEECCEEEEEEee
Confidence 368999999999999999999975 7999999999766555567788999999999999999999999999999999999
Q ss_pred cCCCCHHHHHhhCCCCCCHHHHHHHHHHHHHHHHHHhhcCCCCCeEecCCCCCCeeeCCC--CcEEEeeeccccccCCCC
Q 005040 505 MPNGSLEKWLYSHNYFLDILQRLNIMIDVGSALEYLHHCHSSAPIIHCDLKPTNILLDEN--MVAHVSDFGISKLLGEGE 582 (717)
Q Consensus 505 ~~~g~L~~~l~~~~~~~~~~~~~~i~~~i~~~l~~LH~~~~~~~ivH~dlk~~Nill~~~--~~~kl~Dfgl~~~~~~~~ 582 (717)
|+||+|.+++......+++..+..++.||+.||+||| +++|+||||||+|||++.+ +.+||+|||+++.+....
T Consensus 236 ~~gg~L~~~i~~~~~~l~e~~~~~~~~qi~~al~ylH----~~~iiHRDlKp~Nill~~~~~~~vKl~DFG~a~~~~~~~ 311 (573)
T 3uto_A 236 MSGGELFEKVADEHNKMSEDEAVEYMRQVCKGLCHMH----ENNYVHLDLKPENIMFTTKRSNELKLIDFGLTAHLDPKQ 311 (573)
T ss_dssp CCCCBHHHHHTCTTSCEEHHHHHHHHHHHHHHHHHHH----HTTEECCCCCGGGEEESSSSCCCEEECCCSSCEECCTTS
T ss_pred cCCCcHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHH----HCCeeeccCChhhccccCCCCCCEEEeeccceeEccCCC
Confidence 9999999999876666999999999999999999999 6789999999999999854 899999999999875432
Q ss_pred CceeeeccccCccccCCCccCCCCcCcccchhhHHHHHHHHHhCCCCCCccccCcchHHHHHHhhCCCchhhhccccchh
Q 005040 583 DSVIQTMTMATIGYMAPEYGSEGIVSTKCDVYSYGVLLMETFTEKKPTDEMFTGEMSLRRWVKESLPHRLTEVVDANLVR 662 (717)
Q Consensus 583 ~~~~~~~~~~t~~y~aPE~~~~~~~~~~~Dvws~G~il~el~tg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 662 (717)
.....+||+.|||||++.+..|+.++||||+||++|||++|+.||.+.... .....+..... . +..
T Consensus 312 ---~~~~~~GT~~y~APEv~~~~~y~~~~DiWSlGvilyeml~G~~Pf~~~~~~--~~~~~i~~~~~-~--------~~~ 377 (573)
T 3uto_A 312 ---SVKVTTGTAEFAAPEVAEGKPVGYYTDMWSVGVLSYILLSGLSPFGGENDD--ETLRNVKSCDW-N--------MDD 377 (573)
T ss_dssp ---EEEEECSSGGGCCHHHHTTCCBCHHHHHHHHHHHHHHHHHSCCSSCCSSHH--HHHHHHHTTCC-C--------CCS
T ss_pred ---ceeeeEECccccCHHHhCCCCCCcHHHHHHHHHHHHHHHHCCCCCCCcCHH--HHHHHHHhCCC-C--------CCc
Confidence 234457999999999999999999999999999999999999999763221 11111111100 0 000
Q ss_pred hhhhhhhhHHHHHHHHHHHhhccCCCCCCCCCHHHHHH
Q 005040 663 EEQAFSDKMDCLFSIMDLALDCCMDTPHKRIHMTDAAA 700 (717)
Q Consensus 663 ~~~~~~~~~~~~~~l~~li~~cl~~~P~~Rpt~~ev~~ 700 (717)
.....++.++.+||.+||..||++|||+.|+++
T Consensus 378 -----~~~~~~s~~~~dli~~~L~~dp~~R~t~~e~l~ 410 (573)
T 3uto_A 378 -----SAFSGISEDGKDFIRKLLLADPNTRMTIHQALE 410 (573)
T ss_dssp -----GGGTTSCHHHHHHHHTTSCSSGGGSCCHHHHHH
T ss_pred -----ccccCCCHHHHHHHHHHccCChhHCcCHHHHhc
Confidence 111234566889999999999999999999986
No 21
>2qkw_B Protein kinase; three-helix bundle motif, AVRPTO-PTO duplex, layered beta- sheets, transferas; HET: SEP TPO; 3.20A {Solanum pimpinellifolium} PDB: 3hgk_A*
Probab=100.00 E-value=1.2e-44 Score=377.54 Aligned_cols=282 Identities=35% Similarity=0.572 Sum_probs=231.6
Q ss_pred CHHHHHHHhccCCccccccccccEEEEEEEecCCCeEEEEEechhhHHHHHHHHHHHHHHHhcCCCceeeEeeeeecCCe
Q 005040 418 SYLDIRRATDEFNECNLLGTGGFGSVYKGTLSDGTNVAIKIFNLQLERAFRSFDSECEILRNVRHRNLLKILGSCSNLDF 497 (717)
Q Consensus 418 ~~~~~~~~~~~~~~~~~lg~G~~g~V~~~~~~~~~~vavK~~~~~~~~~~~~~~~e~~~l~~l~hpniv~~~~~~~~~~~ 497 (717)
.+.++..++++|+..+.||+|+||.||+|.+++++.||||++........+.+.+|+++++.++||||+++++++.+.+.
T Consensus 30 ~~~~~~~~~~~y~~~~~lg~G~~g~Vy~~~~~~~~~vavK~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~ 109 (321)
T 2qkw_B 30 PLVDLEEATNNFDHKFLIGHGVFGKVYKGVLRDGAKVALKRRTPESSQGIEEFETEIETLSFCRHPHLVSLIGFCDERNE 109 (321)
T ss_dssp CCSCCCCCCCCCSCCCCSCBCSSSEEEEEECTTCCEEEEEECCSCCSSHHHHHHHHHHGGGSCCCTTBCCEEEECCCTTC
T ss_pred cHHHHHHHHhccCccceeecCCCeeEEEEEECCCCEEEEEEecccChHHHHHHHHHHHHHHhCCCCCEeeEEEEEcCCCe
Confidence 33445557789999999999999999999988899999999876655566788999999999999999999999999999
Q ss_pred eEEEEEccCCCCHHHHHhhCC---CCCCHHHHHHHHHHHHHHHHHHhhcCCCCCeEecCCCCCCeeeCCCCcEEEeeecc
Q 005040 498 KALVLEFMPNGSLEKWLYSHN---YFLDILQRLNIMIDVGSALEYLHHCHSSAPIIHCDLKPTNILLDENMVAHVSDFGI 574 (717)
Q Consensus 498 ~~lv~e~~~~g~L~~~l~~~~---~~~~~~~~~~i~~~i~~~l~~LH~~~~~~~ivH~dlk~~Nill~~~~~~kl~Dfgl 574 (717)
.++||||+++|+|.+++.... ..+++..+..++.|+++||.||| +.+|+||||||+||+++.++.+||+|||+
T Consensus 110 ~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~i~~~i~~~l~~lH----~~~ivH~dlkp~Nil~~~~~~~kl~Dfg~ 185 (321)
T 2qkw_B 110 MILIYKYMENGNLKRHLYGSDLPTMSMSWEQRLEICIGAARGLHYLH----TRAIIHRDVKSINILLDENFVPKITDFGI 185 (321)
T ss_dssp CEEEEECCTTCBTGGGSSSSCCCSCCCCHHHHHHHHHHHHHHHHHHH----HTTEECSCCCSTTEEECTTCCEEECCCTT
T ss_pred EEEEEEcCCCCcHHHHHhccCCCccccCHHHHHHHHHHHHHHHHHhc----CCCeecCCCCHHHEEECCCCCEEEeeccc
Confidence 999999999999999997543 35899999999999999999999 67899999999999999999999999999
Q ss_pred ccccCCCCCceeeeccccCccccCCCccCCCCcCcccchhhHHHHHHHHHhCCCCCCccccC-cchHHHHHHhhC-CCch
Q 005040 575 SKLLGEGEDSVIQTMTMATIGYMAPEYGSEGIVSTKCDVYSYGVLLMETFTEKKPTDEMFTG-EMSLRRWVKESL-PHRL 652 (717)
Q Consensus 575 ~~~~~~~~~~~~~~~~~~t~~y~aPE~~~~~~~~~~~Dvws~G~il~el~tg~~p~~~~~~~-~~~~~~~~~~~~-~~~~ 652 (717)
+................||+.|+|||++.+..++.++||||||+++|||++|+.||....+. ......|..... ....
T Consensus 186 ~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Di~slG~il~ell~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~ 265 (321)
T 2qkw_B 186 SKKGTELDQTHLSTVVKGTLGYIDPEYFIKGRLTEKSDVYSFGVVLFEVLCARSAIVQSLPREMVNLAEWAVESHNNGQL 265 (321)
T ss_dssp CEECSSSSCCCCBCCCEEETTTCCHHHHHHCBCCTHHHHHHHHHHHHHHHHCCTTCSCSSSSSCCCHHHHTHHHHTTTCC
T ss_pred ccccccccccccccccCCCccccCHHHhcCCCCCcccchHhHHHHHHHHHhCCCcccccCcHHHHHHHHHhhhccccccH
Confidence 98765433333334456899999999988889999999999999999999999999764433 234444543322 2223
Q ss_pred hhhccccchhhhhhhhhhHHHHHHHHHHHhhccCCCCCCCCCHHHHHHHHHHhHHh
Q 005040 653 TEVVDANLVREEQAFSDKMDCLFSIMDLALDCCMDTPHKRIHMTDAAAKLRKIKAK 708 (717)
Q Consensus 653 ~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~cl~~~P~~Rpt~~ev~~~L~~~~~~ 708 (717)
...+++..... ...+++..+.+++.+||+.||++|||+.|+++.|+.+.+.
T Consensus 266 ~~~~~~~~~~~-----~~~~~~~~l~~li~~~l~~dP~~Rps~~ell~~L~~~l~~ 316 (321)
T 2qkw_B 266 EQIVDPNLADK-----IRPESLRKFGDTAVKCLALSSEDRPSMGDVLWKLEYALRL 316 (321)
T ss_dssp CSSSSSSCTTC-----SCHHHHHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHHHS
T ss_pred HHhcChhhccc-----cCHHHHHHHHHHHHHHcCCCcccCcCHHHHHHHHHHHhhc
Confidence 33344333221 1235678899999999999999999999999999988764
No 22
>3s95_A LIMK-1, LIM domain kinase 1; structural genomics, structural genomics consortium, SGC, PR kinase, transferase-antibiotic complex; HET: STU GOL; 1.65A {Homo sapiens}
Probab=100.00 E-value=1.7e-43 Score=367.05 Aligned_cols=266 Identities=25% Similarity=0.386 Sum_probs=218.5
Q ss_pred hccCCccccccccccEEEEEEEec-CCCeEEEEEechhhHHHHHHHHHHHHHHHhcCCCceeeEeeeeecCCeeEEEEEc
Q 005040 426 TDEFNECNLLGTGGFGSVYKGTLS-DGTNVAIKIFNLQLERAFRSFDSECEILRNVRHRNLLKILGSCSNLDFKALVLEF 504 (717)
Q Consensus 426 ~~~~~~~~~lg~G~~g~V~~~~~~-~~~~vavK~~~~~~~~~~~~~~~e~~~l~~l~hpniv~~~~~~~~~~~~~lv~e~ 504 (717)
.++|...+.||+|+||+||+|.+. +++.||+|++........+.+.+|++++++++||||+++++++.+.+..++||||
T Consensus 9 ~~~~~~~~~lG~G~~g~V~~~~~~~~~~~va~K~~~~~~~~~~~~~~~E~~~l~~l~hp~iv~~~~~~~~~~~~~lv~e~ 88 (310)
T 3s95_A 9 PSDLIHGEVLGKGCFGQAIKVTHRETGEVMVMKELIRFDEETQRTFLKEVKVMRCLEHPNVLKFIGVLYKDKRLNFITEY 88 (310)
T ss_dssp GGGEEEEEEEECCSSEEEEEEEETTTCCEEEEEEESCCCHHHHHHHHHHHHHHTTCCCTTBCCEEEEEEETTEEEEEEEC
T ss_pred hhHeeccceecCCCCEEEEEEEECCCCcEEEEEEeccCCHHHHHHHHHHHHHHHhCCCcCcccEEEEEecCCeeEEEEEe
Confidence 368899999999999999999975 7899999988765566678899999999999999999999999999999999999
Q ss_pred cCCCCHHHHHhhCCCCCCHHHHHHHHHHHHHHHHHHhhcCCCCCeEecCCCCCCeeeCCCCcEEEeeeccccccCCCCCc
Q 005040 505 MPNGSLEKWLYSHNYFLDILQRLNIMIDVGSALEYLHHCHSSAPIIHCDLKPTNILLDENMVAHVSDFGISKLLGEGEDS 584 (717)
Q Consensus 505 ~~~g~L~~~l~~~~~~~~~~~~~~i~~~i~~~l~~LH~~~~~~~ivH~dlk~~Nill~~~~~~kl~Dfgl~~~~~~~~~~ 584 (717)
+++|+|.+++......+++..+..++.|+++||+||| +.+|+||||||+||+++.++.+||+|||++.........
T Consensus 89 ~~~~~L~~~l~~~~~~~~~~~~~~i~~qi~~al~~lH----~~~ivH~dlkp~Nil~~~~~~~kl~Dfg~~~~~~~~~~~ 164 (310)
T 3s95_A 89 IKGGTLRGIIKSMDSQYPWSQRVSFAKDIASGMAYLH----SMNIIHRDLNSHNCLVRENKNVVVADFGLARLMVDEKTQ 164 (310)
T ss_dssp CTTCBHHHHHHHCCTTSCHHHHHHHHHHHHHHHHHHH----HTTEECSCCSTTSEEECTTSCEEECCCTTCEECC-----
T ss_pred cCCCcHHHHHHhccCCCCHHHHHHHHHHHHHHHHHHH----hCCccCCCCCcCeEEECCCCCEEEeecccceeccccccc
Confidence 9999999999987777999999999999999999999 678999999999999999999999999999876433221
Q ss_pred e------------eeeccccCccccCCCccCCCCcCcccchhhHHHHHHHHHhCCCCCCccccCcchHHHHHHhhCCCch
Q 005040 585 V------------IQTMTMATIGYMAPEYGSEGIVSTKCDVYSYGVLLMETFTEKKPTDEMFTGEMSLRRWVKESLPHRL 652 (717)
Q Consensus 585 ~------------~~~~~~~t~~y~aPE~~~~~~~~~~~Dvws~G~il~el~tg~~p~~~~~~~~~~~~~~~~~~~~~~~ 652 (717)
. ......||+.|+|||++.+..++.++||||||+++|||++|..|+........... ...
T Consensus 165 ~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Di~slG~~l~el~~g~~~~~~~~~~~~~~~--------~~~ 236 (310)
T 3s95_A 165 PEGLRSLKKPDRKKRYTVVGNPYWMAPEMINGRSYDEKVDVFSFGIVLCEIIGRVNADPDYLPRTMDFG--------LNV 236 (310)
T ss_dssp ---------------CCCCSCGGGCCHHHHTTCCCCTHHHHHHHHHHHHHHHHTCCSSTTTSCBCTTSS--------BCH
T ss_pred ccccccccccccccccccCCCcceeCHHHhcCCCCCcHHHHHHHHHHHHHHhcCCCCCcchhhhHHHHh--------hhh
Confidence 1 11145689999999999999999999999999999999999999865332211000 000
Q ss_pred hhhccccchhhhhhhhhhHHHHHHHHHHHhhccCCCCCCCCCHHHHHHHHHHhHHhhccc
Q 005040 653 TEVVDANLVREEQAFSDKMDCLFSIMDLALDCCMDTPHKRIHMTDAAAKLRKIKAKFLDD 712 (717)
Q Consensus 653 ~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~cl~~~P~~Rpt~~ev~~~L~~~~~~~~~~ 712 (717)
....+. ..+..++..+.+++.+||+.||++|||+.|+++.|+++++.....
T Consensus 237 ~~~~~~---------~~~~~~~~~l~~li~~~l~~dP~~Rps~~~l~~~L~~l~~~~~~~ 287 (310)
T 3s95_A 237 RGFLDR---------YCPPNCPPSFFPITVRCCDLDPEKRPSFVKLEHWLETLRMHLAGH 287 (310)
T ss_dssp HHHHHH---------TCCTTCCTTHHHHHHHHTCSSGGGSCCHHHHHHHHHHHHHHHHHC
T ss_pred hccccc---------cCCCCCCHHHHHHHHHHccCChhhCcCHHHHHHHHHHHHHhccCc
Confidence 000000 011234456889999999999999999999999999998776543
No 23
>3soc_A Activin receptor type-2A; structural genomics consortium, SGC, transferase, protein KI; HET: GVD; 1.95A {Homo sapiens} PDB: 3q4t_A* 4asx_A* 2qlu_A*
Probab=100.00 E-value=8.1e-44 Score=371.14 Aligned_cols=274 Identities=23% Similarity=0.323 Sum_probs=212.1
Q ss_pred hccCCccccccccccEEEEEEEecCCCeEEEEEechhhHHHHHHHHHHHHHHHhcCCCceeeEeeeeecCC----eeEEE
Q 005040 426 TDEFNECNLLGTGGFGSVYKGTLSDGTNVAIKIFNLQLERAFRSFDSECEILRNVRHRNLLKILGSCSNLD----FKALV 501 (717)
Q Consensus 426 ~~~~~~~~~lg~G~~g~V~~~~~~~~~~vavK~~~~~~~~~~~~~~~e~~~l~~l~hpniv~~~~~~~~~~----~~~lv 501 (717)
.++|++.+.||+|+||.||+|++. ++.||||++...... ......|+.++++++||||+++++++.+.. ..++|
T Consensus 23 ~~~y~~~~~lg~G~~g~Vy~~~~~-~~~vavK~~~~~~~~-~~~~~~E~~~l~~l~hpniv~~~~~~~~~~~~~~~~~lv 100 (322)
T 3soc_A 23 SMPLQLLEVKARGRFGCVWKAQLL-NEYVAVKIFPIQDKQ-SWQNEYEVYSLPGMKHENILQFIGAEKRGTSVDVDLWLI 100 (322)
T ss_dssp TEEEEEEEEEECSTTCEEEEEEET-TEEEEEEEECGGGHH-HHHHHHHHHTSTTCCCTTBCCEEEEEEEECSSSEEEEEE
T ss_pred hhhchhhheecccCceEEEEEEEC-CCEEEEEEeecCchH-HHHHHHHHHHHhcCCCCCchhhcceeccCCCCCceEEEE
Confidence 478999999999999999999885 789999999765433 344566999999999999999999997744 46999
Q ss_pred EEccCCCCHHHHHhhCCCCCCHHHHHHHHHHHHHHHHHHhhcCCCC----------CeEecCCCCCCeeeCCCCcEEEee
Q 005040 502 LEFMPNGSLEKWLYSHNYFLDILQRLNIMIDVGSALEYLHHCHSSA----------PIIHCDLKPTNILLDENMVAHVSD 571 (717)
Q Consensus 502 ~e~~~~g~L~~~l~~~~~~~~~~~~~~i~~~i~~~l~~LH~~~~~~----------~ivH~dlk~~Nill~~~~~~kl~D 571 (717)
|||+++|+|.++++... +++..+..++.|++.||+||| +. +|+||||||+||+++.++.+||+|
T Consensus 101 ~e~~~~g~L~~~l~~~~--~~~~~~~~i~~qi~~al~~LH----~~~~~l~~~~~~~ivH~Dlkp~Nill~~~~~~kL~D 174 (322)
T 3soc_A 101 TAFHEKGSLSDFLKANV--VSWNELCHIAETMARGLAYLH----EDIPGLKDGHKPAISHRDIKSKNVLLKNNLTACIAD 174 (322)
T ss_dssp EECCTTCBHHHHHHHCC--BCHHHHHHHHHHHHHHHHHHT----CCEEEETTEEECEEECSCCSGGGEEECTTCCEEECC
T ss_pred EecCCCCCHHHHHHhcC--CCHHHHHHHHHHHHHHHHHHH----hhccccccccCCCEEeCCCChHhEEECCCCeEEEcc
Confidence 99999999999998754 899999999999999999999 56 999999999999999999999999
Q ss_pred eccccccCCCCCceeeeccccCccccCCCccCC-----CCcCcccchhhHHHHHHHHHhCCCCCCccccCcc-hHHHHHH
Q 005040 572 FGISKLLGEGEDSVIQTMTMATIGYMAPEYGSE-----GIVSTKCDVYSYGVLLMETFTEKKPTDEMFTGEM-SLRRWVK 645 (717)
Q Consensus 572 fgl~~~~~~~~~~~~~~~~~~t~~y~aPE~~~~-----~~~~~~~Dvws~G~il~el~tg~~p~~~~~~~~~-~~~~~~~ 645 (717)
||+++...............||+.|+|||++.+ ..++.++|||||||++|||+||+.||........ .......
T Consensus 175 Fg~a~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~~~~~DiwslG~il~el~tg~~pf~~~~~~~~~~~~~~~~ 254 (322)
T 3soc_A 175 FGLALKFEAGKSAGDTHGQVGTRRYMAPEVLEGAINFQRDAFLRIDMYAMGLVLWELASRCTAADGPVDEYMLPFEEEIG 254 (322)
T ss_dssp CTTCEEECTTSCCCCCTTCCCCGGGCCHHHHTTCCCCCHHHHHHHHHHHHHHHHHHHHTTBTTSSSCCCCCCCTTHHHHC
T ss_pred CCcccccccccCccccccCccCccccCHhhcccccccCcCCCccchhHHHHHHHHHHHhCCCCCCCCcchhccchhhhhc
Confidence 999987755443333344578999999998876 4677889999999999999999999976433211 1111100
Q ss_pred hhCCC--chhh-hccccchhhhhhhhhhHHHHHHHHHHHhhccCCCCCCCCCHHHHHHHHHHhHHh
Q 005040 646 ESLPH--RLTE-VVDANLVREEQAFSDKMDCLFSIMDLALDCCMDTPHKRIHMTDAAAKLRKIKAK 708 (717)
Q Consensus 646 ~~~~~--~~~~-~~~~~~~~~~~~~~~~~~~~~~l~~li~~cl~~~P~~Rpt~~ev~~~L~~~~~~ 708 (717)
. .+. ...+ ..................++.++.+++.+||+.||++|||+.|+++.|+++.+.
T Consensus 255 ~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~cl~~dP~~Rps~~ell~~L~~l~~~ 319 (322)
T 3soc_A 255 Q-HPSLEDMQEVVVHKKKRPVLRDYWQKHAGMAMLCETIEECWDHDAEARLSAGCVGERITQMQRL 319 (322)
T ss_dssp S-SCCHHHHHHHHTTSCCCCCCCGGGGSSHHHHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHHHH
T ss_pred c-CCchhhhhhhhhcccCCCCccccccccchHHHHHHHHHHHccCChhhCcCHHHHHHHHHHHHHH
Confidence 0 000 0000 000011111111122234567799999999999999999999999999999764
No 24
>3fxz_A Serine/threonine-protein kinase PAK 1; transferase, ATP-binding, phosphorylation, allosteric enzyme, alternative splicing, apoptosis, cell junction; HET: TPO FLL; 1.64A {Homo sapiens} SCOP: d.144.1.7 PDB: 3fy0_A* 4daw_A* 3q52_A* 3q53_A* 1yhw_A 1f3m_C 1yhv_A 2hy8_1* 3q4z_A*
Probab=100.00 E-value=2.9e-43 Score=362.33 Aligned_cols=250 Identities=24% Similarity=0.311 Sum_probs=208.7
Q ss_pred hccCCccccccccccEEEEEEEec-CCCeEEEEEechhhHHHHHHHHHHHHHHHhcCCCceeeEeeeeecCCeeEEEEEc
Q 005040 426 TDEFNECNLLGTGGFGSVYKGTLS-DGTNVAIKIFNLQLERAFRSFDSECEILRNVRHRNLLKILGSCSNLDFKALVLEF 504 (717)
Q Consensus 426 ~~~~~~~~~lg~G~~g~V~~~~~~-~~~~vavK~~~~~~~~~~~~~~~e~~~l~~l~hpniv~~~~~~~~~~~~~lv~e~ 504 (717)
.++|+..+.||+|+||+||+|... +++.||+|++........+.+.+|+.++++++||||+++++++.+.+..++||||
T Consensus 19 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~E~~~l~~l~hp~iv~~~~~~~~~~~~~lv~e~ 98 (297)
T 3fxz_A 19 KKKYTRFEKIGQGASGTVYTAMDVATGQEVAIRQMNLQQQPKKELIINEILVMRENKNPNIVNYLDSYLVGDELWVVMEY 98 (297)
T ss_dssp GGTBCCCEEEEEETTEEEEEEEBTTTCCEEEEEEEEGGGCSCHHHHHHHHHHHHHCCCTTBCCEEEEEEETTEEEEEEEC
T ss_pred hhceeeeeeeccCCCeEEEEEEECCCCcEEEEEEeecccccHHHHHHHHHHHHhcCCCCCCCeEeEEEEECCEEEEEEEC
Confidence 368999999999999999999964 7999999999766655567788999999999999999999999999999999999
Q ss_pred cCCCCHHHHHhhCCCCCCHHHHHHHHHHHHHHHHHHhhcCCCCCeEecCCCCCCeeeCCCCcEEEeeeccccccCCCCCc
Q 005040 505 MPNGSLEKWLYSHNYFLDILQRLNIMIDVGSALEYLHHCHSSAPIIHCDLKPTNILLDENMVAHVSDFGISKLLGEGEDS 584 (717)
Q Consensus 505 ~~~g~L~~~l~~~~~~~~~~~~~~i~~~i~~~l~~LH~~~~~~~ivH~dlk~~Nill~~~~~~kl~Dfgl~~~~~~~~~~ 584 (717)
+++|+|.+++.... +++..+..++.|++.||.||| +.+|+||||||+||+++.++.+||+|||++........
T Consensus 99 ~~~~~L~~~~~~~~--~~~~~~~~~~~qi~~~l~~lH----~~~i~H~Dlkp~Nil~~~~~~~kl~Dfg~~~~~~~~~~- 171 (297)
T 3fxz_A 99 LAGGSLTDVVTETC--MDEGQIAAVCRECLQALEFLH----SNQVIHRDIKSDNILLGMDGSVKLTDFGFCAQITPEQS- 171 (297)
T ss_dssp CTTCBHHHHHHHSC--CCHHHHHHHHHHHHHHHHHHH----HTTEECCCCSGGGEEECTTCCEEECCCTTCEECCSTTC-
T ss_pred CCCCCHHHHHhhcC--CCHHHHHHHHHHHHHHHHHHH----hCCceeCCCCHHHEEECCCCCEEEeeCCCceecCCccc-
Confidence 99999999998754 899999999999999999999 67899999999999999999999999999987654332
Q ss_pred eeeeccccCccccCCCccCCCCcCcccchhhHHHHHHHHHhCCCCCCccccCcchHHHHHHhhCCCchhhhccccchhhh
Q 005040 585 VIQTMTMATIGYMAPEYGSEGIVSTKCDVYSYGVLLMETFTEKKPTDEMFTGEMSLRRWVKESLPHRLTEVVDANLVREE 664 (717)
Q Consensus 585 ~~~~~~~~t~~y~aPE~~~~~~~~~~~Dvws~G~il~el~tg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 664 (717)
......||+.|+|||++.+..++.++||||+|+++|||++|+.||....... ..........+
T Consensus 172 -~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~ell~g~~pf~~~~~~~-~~~~~~~~~~~--------------- 234 (297)
T 3fxz_A 172 -KRSTMVGTPYWMAPEVVTRKAYGPKVDIWSLGIMAIEMIEGEPPYLNENPLR-ALYLIATNGTP--------------- 234 (297)
T ss_dssp -CBCCCCSCGGGCCHHHHHCSCBCTHHHHHHHHHHHHHHHHSSCTTTTSCHHH-HHHHHHHHCSC---------------
T ss_pred -ccCCccCCcCccChhhhcCCCCCcHHHHHHHHHHHHHHHhCCCCCCCCCHHH-HHHHHHhCCCC---------------
Confidence 2344579999999999999999999999999999999999999997532211 11111111100
Q ss_pred hhhhhhHHHHHHHHHHHhhccCCCCCCCCCHHHHHH
Q 005040 665 QAFSDKMDCLFSIMDLALDCCMDTPHKRIHMTDAAA 700 (717)
Q Consensus 665 ~~~~~~~~~~~~l~~li~~cl~~~P~~Rpt~~ev~~ 700 (717)
....+..++..+.+++.+||+.||++|||++|+++
T Consensus 235 -~~~~~~~~~~~~~~li~~~l~~dp~~Rps~~ell~ 269 (297)
T 3fxz_A 235 -ELQNPEKLSAIFRDFLNRCLEMDVEKRGSAKELLQ 269 (297)
T ss_dssp -CCSCGGGSCHHHHHHHHHHSCSSTTTSCCHHHHTT
T ss_pred -CCCCccccCHHHHHHHHHHccCChhHCcCHHHHhh
Confidence 01112234566889999999999999999999986
No 25
>2psq_A Fibroblast growth factor receptor 2; kinase domain fold consisting of N- and C-lobes, transferase; 2.40A {Homo sapiens} SCOP: d.144.1.7 PDB: 1xr0_A
Probab=100.00 E-value=5.8e-43 Score=371.25 Aligned_cols=263 Identities=24% Similarity=0.424 Sum_probs=215.7
Q ss_pred hccCCccccccccccEEEEEEEec--------CCCeEEEEEechhh-HHHHHHHHHHHHHHHhc-CCCceeeEeeeeecC
Q 005040 426 TDEFNECNLLGTGGFGSVYKGTLS--------DGTNVAIKIFNLQL-ERAFRSFDSECEILRNV-RHRNLLKILGSCSNL 495 (717)
Q Consensus 426 ~~~~~~~~~lg~G~~g~V~~~~~~--------~~~~vavK~~~~~~-~~~~~~~~~e~~~l~~l-~hpniv~~~~~~~~~ 495 (717)
.++|++.+.||+|+||.||+|++. ++..||||+++... ....+.+.+|+++++.+ +||||+++++++.+.
T Consensus 80 ~~~~~~~~~LG~G~fg~Vy~a~~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~~hpnIv~~~~~~~~~ 159 (370)
T 2psq_A 80 RDKLTLGKPLGEGCFGQVVMAEAVGIDKDKPKEAVTVAVKMLKDDATEKDLSDLVSEMEMMKMIGKHKNIINLLGACTQD 159 (370)
T ss_dssp GGGEEEEEEESCCSSSEEEEEEEETCSTTCTTCEEEEEEEECCTTCBHHHHHHHHHHHHHHHHSCCCTTBCCEEEEECSS
T ss_pred HHHCEeeeEEeeCCCeeEEEEEEecccCcCcCcceeEEEEEecCCcCHHHHHHHHHHHHHHHHhcCCCCEeeEEEEEccC
Confidence 478999999999999999999852 35579999997653 34456789999999999 899999999999999
Q ss_pred CeeEEEEEccCCCCHHHHHhhCC---------------CCCCHHHHHHHHHHHHHHHHHHhhcCCCCCeEecCCCCCCee
Q 005040 496 DFKALVLEFMPNGSLEKWLYSHN---------------YFLDILQRLNIMIDVGSALEYLHHCHSSAPIIHCDLKPTNIL 560 (717)
Q Consensus 496 ~~~~lv~e~~~~g~L~~~l~~~~---------------~~~~~~~~~~i~~~i~~~l~~LH~~~~~~~ivH~dlk~~Nil 560 (717)
+..|+||||+++|+|.+++.... ..+++..+..++.|++.||+||| +.+|+||||||+||+
T Consensus 160 ~~~~lv~e~~~~g~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~qi~~aL~~LH----~~~ivHrDlkp~NIl 235 (370)
T 2psq_A 160 GPLYVIVEYASKGNLREYLRARRPPGMEYSYDINRVPEEQMTFKDLVSCTYQLARGMEYLA----SQKCIHRDLAARNVL 235 (370)
T ss_dssp SSCEEEEECCTTCBHHHHHHHTCCC-----------CCCCCCHHHHHHHHHHHHHHHHHHH----HTTEECSCCCGGGEE
T ss_pred CCEEEEEEcCCCCCHHHHHHhhCCccccccccccccccccCCHHHHHHHHHHHHHHHHHHH----hCCeeccccchhhEE
Confidence 99999999999999999998643 34789999999999999999999 678999999999999
Q ss_pred eCCCCcEEEeeeccccccCCCCCceeeeccccCccccCCCccCCCCcCcccchhhHHHHHHHHHh-CCCCCCccccCcch
Q 005040 561 LDENMVAHVSDFGISKLLGEGEDSVIQTMTMATIGYMAPEYGSEGIVSTKCDVYSYGVLLMETFT-EKKPTDEMFTGEMS 639 (717)
Q Consensus 561 l~~~~~~kl~Dfgl~~~~~~~~~~~~~~~~~~t~~y~aPE~~~~~~~~~~~Dvws~G~il~el~t-g~~p~~~~~~~~~~ 639 (717)
++.++.+||+|||+++...............+|+.|+|||++.+..++.++|||||||++|||++ |+.||.+.... .
T Consensus 236 l~~~~~~kl~DFG~a~~~~~~~~~~~~~~~~~t~~y~aPE~~~~~~~~~~~DvwslG~il~ellt~g~~p~~~~~~~--~ 313 (370)
T 2psq_A 236 VTENNVMKIADFGLARDINNIDYYKKTTNGRLPVKWMAPEALFDRVYTHQSDVWSFGVLMWEIFTLGGSPYPGIPVE--E 313 (370)
T ss_dssp ECTTCCEEECCCSSCEETTCCCTTCTTTTTTSCGGGCCHHHHHTCCCCHHHHHHHHHHHHHHHHTTSCCSSTTCCGG--G
T ss_pred ECCCCCEEEccccCCcccCcccceecccCCCcccceECHhHhcCCCCCcHHHHHHHHHHHHHHHcCCCCCCCCCCHH--H
Confidence 99999999999999987654433322334457889999999999999999999999999999999 99999763221 1
Q ss_pred HHHHHHhhCCCchhhhccccchhhhhhhhhhHHHHHHHHHHHhhccCCCCCCCCCHHHHHHHHHHhHHhhcc
Q 005040 640 LRRWVKESLPHRLTEVVDANLVREEQAFSDKMDCLFSIMDLALDCCMDTPHKRIHMTDAAAKLRKIKAKFLD 711 (717)
Q Consensus 640 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~cl~~~P~~Rpt~~ev~~~L~~~~~~~~~ 711 (717)
....+...... ..+..++.++.+++.+||+.||++|||+.|+++.|+++.....+
T Consensus 314 ~~~~~~~~~~~-----------------~~~~~~~~~l~~li~~~l~~dP~~Rpt~~ell~~L~~il~~~~~ 368 (370)
T 2psq_A 314 LFKLLKEGHRM-----------------DKPANCTNELYMMMRDCWHAVPSQRPTFKQLVEDLDRILTLTTN 368 (370)
T ss_dssp HHHHHHTTCCC-----------------CCCTTSCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHHHHHC-
T ss_pred HHHHHhcCCCC-----------------CCCCCCCHHHHHHHHHHcCCChhhCcCHHHHHHHHHHHHHHhcc
Confidence 22222111100 11123456788999999999999999999999999999776554
No 26
>3uim_A Brassinosteroid insensitive 1-associated receptor; kinase, protein kinase, transferase; HET: SEP TPO ANP; 2.20A {Arabidopsis thaliana} PDB: 3ulz_A* 3tl8_A*
Probab=100.00 E-value=2.5e-43 Score=368.61 Aligned_cols=285 Identities=36% Similarity=0.559 Sum_probs=233.6
Q ss_pred cCCCCHHHHHHHhccCCccccccccccEEEEEEEecCCCeEEEEEechhhHH-HHHHHHHHHHHHHhcCCCceeeEeeee
Q 005040 414 RRRTSYLDIRRATDEFNECNLLGTGGFGSVYKGTLSDGTNVAIKIFNLQLER-AFRSFDSECEILRNVRHRNLLKILGSC 492 (717)
Q Consensus 414 ~~~~~~~~~~~~~~~~~~~~~lg~G~~g~V~~~~~~~~~~vavK~~~~~~~~-~~~~~~~e~~~l~~l~hpniv~~~~~~ 492 (717)
...+++.++..+.++|+..+.||+|+||.||+|..++++.||||++...... ....+.+|+++++.++||||+++++++
T Consensus 17 ~~~~~~~~~~~~~~~y~~~~~lg~G~~g~V~~~~~~~~~~vavK~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~ 96 (326)
T 3uim_A 17 LKRFSLRELQVASDNFSNKNILGRGGFGKVYKGRLADGTLVAVKRLKEERTQGGELQFQTEVEMISMAVHRNLLRLRGFC 96 (326)
T ss_dssp CEECCTHHHHTTTTSSCSTTEEECCSSSEEEEECCSSSCCEEEEECCC-----CCCHHHHHHHGGGTCCCTTBCCCCEEE
T ss_pred cceecHHHHHHHhhccccceeEecCCCcEEEEEEecCCCEEEEEEeccccCchHHHHHHHHHHHHHhccCCCccceEEEE
Confidence 4567888999999999999999999999999999888999999998755422 223688899999999999999999999
Q ss_pred ecCCeeEEEEEccCCCCHHHHHhhCC---CCCCHHHHHHHHHHHHHHHHHHhhcCCCCCeEecCCCCCCeeeCCCCcEEE
Q 005040 493 SNLDFKALVLEFMPNGSLEKWLYSHN---YFLDILQRLNIMIDVGSALEYLHHCHSSAPIIHCDLKPTNILLDENMVAHV 569 (717)
Q Consensus 493 ~~~~~~~lv~e~~~~g~L~~~l~~~~---~~~~~~~~~~i~~~i~~~l~~LH~~~~~~~ivH~dlk~~Nill~~~~~~kl 569 (717)
.+.+..++||||+++|+|.+++.... ..+++..+..++.|++.||+|||+.+ ..+|+||||||+||+++.++.+||
T Consensus 97 ~~~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~i~~~i~~~l~~lH~~~-~~~ivH~Dlkp~Nil~~~~~~~kl 175 (326)
T 3uim_A 97 MTPTERLLVYPYMANGSVASCLRERPESQPPLDWPKRQRIALGSARGLAYLHDHC-DPKIIHRDVKAANILLDEEFEAVV 175 (326)
T ss_dssp CCSSCCEEEEECCTTCBHHHHHHCCSTTCCCCCHHHHHHHHHHHHHHHHHHHHSS-SSCEECCCCSGGGEEECTTCCEEE
T ss_pred ecCCceEEEEEeccCCCHHHHHHhccccCCCCCHHHHHHHHHHHHHHHHHHHhCC-CCCeEeCCCchhhEEECCCCCEEe
Confidence 99999999999999999999998643 34899999999999999999999532 228999999999999999999999
Q ss_pred eeeccccccCCCCCceeeeccccCccccCCCccCCCCcCcccchhhHHHHHHHHHhCCCCCCcc---ccCcchHHHHHHh
Q 005040 570 SDFGISKLLGEGEDSVIQTMTMATIGYMAPEYGSEGIVSTKCDVYSYGVLLMETFTEKKPTDEM---FTGEMSLRRWVKE 646 (717)
Q Consensus 570 ~Dfgl~~~~~~~~~~~~~~~~~~t~~y~aPE~~~~~~~~~~~Dvws~G~il~el~tg~~p~~~~---~~~~~~~~~~~~~ 646 (717)
+|||++......... ......||+.|+|||++.+..++.++||||+|+++|||++|+.||+.. .........|...
T Consensus 176 ~Dfg~~~~~~~~~~~-~~~~~~gt~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~g~~pf~~~~~~~~~~~~~~~~~~~ 254 (326)
T 3uim_A 176 GDFGLAKLMDYKDTH-VTTAVRGTIGHIAPEYLSTGKSSEKTDVFGYGVMLLELITGQRAFDLARLANDDDVMLLDWVKG 254 (326)
T ss_dssp CCCSSCEECCSSSSC-EECCCCSCGGGCCHHHHHHSEECHHHHHHHHHHHHHHHHHCCCSBCHHHHTTTSCSBHHHHHTT
T ss_pred ccCccccccCccccc-ccccccCCcCccCHHHhccCCCCccccchhHHHHHHHHHhCCCcccccccccccchhHHHHHHH
Confidence 999999876543322 234456899999999998888999999999999999999999999642 2334556666665
Q ss_pred hCCC-chhhhccccchhhhhhhhhhHHHHHHHHHHHhhccCCCCCCCCCHHHHHHHHHHh
Q 005040 647 SLPH-RLTEVVDANLVREEQAFSDKMDCLFSIMDLALDCCMDTPHKRIHMTDAAAKLRKI 705 (717)
Q Consensus 647 ~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~cl~~~P~~Rpt~~ev~~~L~~~ 705 (717)
.... ......+...... ...+.+..+.+++.+||+.||++|||++||++.|++.
T Consensus 255 ~~~~~~~~~~~~~~~~~~-----~~~~~~~~l~~li~~cl~~dP~~Rps~~ell~~L~~~ 309 (326)
T 3uim_A 255 LLKEKKLEALVDVDLQGN-----YKDEEVEQLIQVALLCTQSSPMERPKMSEVVRMLEGD 309 (326)
T ss_dssp TTSSCCSTTSSCTTCTTS-----CCHHHHHHHHHHHHHHTCSCGGGSCCHHHHHHHHHTS
T ss_pred HhhchhhhhhcChhhccc-----cCHHHHHHHHHHHHHHhCcCCccCCCHHHHHHHhcCc
Confidence 4433 2334444333221 2235667899999999999999999999999999853
No 27
>3cbl_A C-FES, proto-oncogene tyrosine-protein kinase FES/FPS; V-FES, fujinami, avian sarcoma, viral, feline virus, SGC; HET: STU; 1.75A {Homo sapiens} PDB: 3bkb_A* 3cd3_A* 4e93_A*
Probab=100.00 E-value=8.2e-44 Score=379.21 Aligned_cols=261 Identities=27% Similarity=0.437 Sum_probs=215.1
Q ss_pred hccCCccccccccccEEEEEEEec-CCCeEEEEEechhh-HHHHHHHHHHHHHHHhcCCCceeeEeeeeecCCeeEEEEE
Q 005040 426 TDEFNECNLLGTGGFGSVYKGTLS-DGTNVAIKIFNLQL-ERAFRSFDSECEILRNVRHRNLLKILGSCSNLDFKALVLE 503 (717)
Q Consensus 426 ~~~~~~~~~lg~G~~g~V~~~~~~-~~~~vavK~~~~~~-~~~~~~~~~e~~~l~~l~hpniv~~~~~~~~~~~~~lv~e 503 (717)
.++|++.+.||+|+||.||+|.+. +++.||||+++... ....+.+.+|++++++++||||+++++++.+.+..++|||
T Consensus 113 ~~~~~~~~~lG~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~hpniv~~~~~~~~~~~~~lv~e 192 (377)
T 3cbl_A 113 HEDLVLGEQIGRGNFGEVFSGRLRADNTLVAVKSCRETLPPDLKAKFLQEARILKQYSHPNIVRLIGVCTQKQPIYIVME 192 (377)
T ss_dssp GGGEEEEEEEEEETTEEEEEEEETTTCCEEEEEECCTTSCHHHHTTTTHHHHHHTTCCCTTBCCEEEEECSSSSCEEEEE
T ss_pred hHHeEEeeEeccCCCCeEEEEEEecCCeEEEEEEccccCCHHHHHHHHHHHHHHHhCCCCCEEEEEEEEecCCCcEEEEE
Confidence 468899999999999999999986 78999999987543 3344568899999999999999999999999999999999
Q ss_pred ccCCCCHHHHHhhCCCCCCHHHHHHHHHHHHHHHHHHhhcCCCCCeEecCCCCCCeeeCCCCcEEEeeeccccccCCCCC
Q 005040 504 FMPNGSLEKWLYSHNYFLDILQRLNIMIDVGSALEYLHHCHSSAPIIHCDLKPTNILLDENMVAHVSDFGISKLLGEGED 583 (717)
Q Consensus 504 ~~~~g~L~~~l~~~~~~~~~~~~~~i~~~i~~~l~~LH~~~~~~~ivH~dlk~~Nill~~~~~~kl~Dfgl~~~~~~~~~ 583 (717)
|+++|+|.++++..+..+++..+..++.|++.||+||| +.+|+||||||+||+++.++.+||+|||+++.......
T Consensus 193 ~~~~g~L~~~l~~~~~~~~~~~~~~~~~qi~~~l~~LH----~~~ivHrDlkp~Nil~~~~~~~kl~DfG~s~~~~~~~~ 268 (377)
T 3cbl_A 193 LVQGGDFLTFLRTEGARLRVKTLLQMVGDAAAGMEYLE----SKCCIHRDLAARNCLVTEKNVLKISDFGMSREEADGVY 268 (377)
T ss_dssp CCTTCBHHHHHHHHGGGCCHHHHHHHHHHHHHHHHHHH----HTTEECSCCSGGGEEECTTCCEEECCGGGCEECTTSEE
T ss_pred cCCCCCHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHH----HCCcCCcccCHHHEEEcCCCcEEECcCCCceecCCCce
Confidence 99999999999876666899999999999999999999 67899999999999999999999999999986543221
Q ss_pred ceeeeccccCccccCCCccCCCCcCcccchhhHHHHHHHHHh-CCCCCCccccCcchHHHHHHhhCCCchhhhccccchh
Q 005040 584 SVIQTMTMATIGYMAPEYGSEGIVSTKCDVYSYGVLLMETFT-EKKPTDEMFTGEMSLRRWVKESLPHRLTEVVDANLVR 662 (717)
Q Consensus 584 ~~~~~~~~~t~~y~aPE~~~~~~~~~~~Dvws~G~il~el~t-g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 662 (717)
........+++.|+|||.+.++.++.++|||||||++|||++ |+.||...... .....+.....
T Consensus 269 ~~~~~~~~~~~~y~aPE~~~~~~~~~~~DvwslG~il~el~t~g~~p~~~~~~~--~~~~~~~~~~~------------- 333 (377)
T 3cbl_A 269 AASGGLRQVPVKWTAPEALNYGRYSSESDVWSFGILLWETFSLGASPYPNLSNQ--QTREFVEKGGR------------- 333 (377)
T ss_dssp ECCSSCCEEEGGGSCHHHHHHCEEEHHHHHHHHHHHHHHHHTTSCCSSTTSCHH--HHHHHHHTTCC-------------
T ss_pred eecCCCCCCCcCcCCHhHhccCCCCchhhHHHHHHHHHHHHhCCCCCCCCCCHH--HHHHHHHcCCC-------------
Confidence 111122235778999999988899999999999999999998 99999764221 12222211110
Q ss_pred hhhhhhhhHHHHHHHHHHHhhccCCCCCCCCCHHHHHHHHHHhHHhh
Q 005040 663 EEQAFSDKMDCLFSIMDLALDCCMDTPHKRIHMTDAAAKLRKIKAKF 709 (717)
Q Consensus 663 ~~~~~~~~~~~~~~l~~li~~cl~~~P~~Rpt~~ev~~~L~~~~~~~ 709 (717)
.+.+..++.++.+++.+||+.||++|||++++++.|+++.++.
T Consensus 334 ----~~~~~~~~~~l~~li~~cl~~dP~~Rps~~~i~~~L~~i~~~~ 376 (377)
T 3cbl_A 334 ----LPCPELCPDAVFRLMEQCWAYEPGQRPSFSTIYQELQSIRKRH 376 (377)
T ss_dssp ----CCCCTTCCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHHHHC
T ss_pred ----CCCCCCCCHHHHHHHHHHcCCCchhCcCHHHHHHHHHHHHhhc
Confidence 0111234567889999999999999999999999999997754
No 28
>3ugc_A Tyrosine-protein kinase JAK2; small molecule inhibitor, ATP binding, transferase-transfera inhibitor complex; HET: 046; 1.34A {} PDB: 3krr_A* 3lpb_A* 4aqc_A* 4e4m_A* 4f08_A* 4f09_A* 3q32_A* 3rvg_A* 4hge_A* 3tjc_A* 3tjd_A* 4bbe_A* 4bbf_A* 2b7a_A* 3fup_A* 3e64_A* 3e62_A* 3e63_A* 2xa4_A* 3iok_A* ...
Probab=100.00 E-value=1.4e-43 Score=364.87 Aligned_cols=276 Identities=26% Similarity=0.439 Sum_probs=212.5
Q ss_pred hccCCccccccccccEEEEEEEe-----cCCCeEEEEEechhhHHHHHHHHHHHHHHHhcCCCceeeEeeeeec--CCee
Q 005040 426 TDEFNECNLLGTGGFGSVYKGTL-----SDGTNVAIKIFNLQLERAFRSFDSECEILRNVRHRNLLKILGSCSN--LDFK 498 (717)
Q Consensus 426 ~~~~~~~~~lg~G~~g~V~~~~~-----~~~~~vavK~~~~~~~~~~~~~~~e~~~l~~l~hpniv~~~~~~~~--~~~~ 498 (717)
.++|++.+.||+|+||+||+|++ .+++.||||++........+.+.+|++++++++||||+++++++.. ....
T Consensus 9 ~~~~~~~~~lg~G~~g~V~~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~~ 88 (295)
T 3ugc_A 9 ERHLKFLQQLGKGNFGSVEMCRYDPLQDNTGEVVAVKKLQHSTEEHLRDFEREIEILKSLQHDNIVKYKGVCYSAGRRNL 88 (295)
T ss_dssp GGGEEEEEEEEECSSEEEEEEEECTTCSSCCEEEEEEEESCCCHHHHHHHHHHHHHHHTCCCTTBCCEEEEECHHHHTSC
T ss_pred HHHhhhhheeeccCCEEEEEEEEecccCCCCcEEEEEEcccCCHHHHHHHHHHHHHHHhCCCCCEeeEEEEEecCCCCce
Confidence 47899999999999999999984 2688999999987666666789999999999999999999999854 3568
Q ss_pred EEEEEccCCCCHHHHHhhCCCCCCHHHHHHHHHHHHHHHHHHhhcCCCCCeEecCCCCCCeeeCCCCcEEEeeecccccc
Q 005040 499 ALVLEFMPNGSLEKWLYSHNYFLDILQRLNIMIDVGSALEYLHHCHSSAPIIHCDLKPTNILLDENMVAHVSDFGISKLL 578 (717)
Q Consensus 499 ~lv~e~~~~g~L~~~l~~~~~~~~~~~~~~i~~~i~~~l~~LH~~~~~~~ivH~dlk~~Nill~~~~~~kl~Dfgl~~~~ 578 (717)
++||||+++|+|.+++......+++..+..++.|++.||+||| +.+|+||||||+||+++.++.+||+|||++...
T Consensus 89 ~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~qi~~~l~~lH----~~~ivH~Dikp~Nil~~~~~~~kl~Dfg~~~~~ 164 (295)
T 3ugc_A 89 KLIMEYLPYGSLRDYLQKHKERIDHIKLLQYTSQICKGMEYLG----TKRYIHRDLATRNILVENENRVKIGDFGLTKVL 164 (295)
T ss_dssp EEEEECCTTCBHHHHHHHCGGGCCHHHHHHHHHHHHHHHHHHH----HTTCCCSCCSGGGEEEEETTEEEECCCCSCC--
T ss_pred EEEEEeCCCCCHHHHHHhcccccCHHHHHHHHHHHHHHHHHHh----cCCcccCCCCHhhEEEcCCCeEEEccCcccccc
Confidence 9999999999999999987667999999999999999999999 678999999999999999999999999999876
Q ss_pred CCCCCc-eeeeccccCccccCCCccCCCCcCcccchhhHHHHHHHHHhCCCCCCccccCcchHHHHHHhhCCCchh--hh
Q 005040 579 GEGEDS-VIQTMTMATIGYMAPEYGSEGIVSTKCDVYSYGVLLMETFTEKKPTDEMFTGEMSLRRWVKESLPHRLT--EV 655 (717)
Q Consensus 579 ~~~~~~-~~~~~~~~t~~y~aPE~~~~~~~~~~~Dvws~G~il~el~tg~~p~~~~~~~~~~~~~~~~~~~~~~~~--~~ 655 (717)
...... .......+|..|+|||.+.+..++.++||||||+++|||++|..|+..... ............... ..
T Consensus 165 ~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~~l~~l~~g~~~~~~~~~---~~~~~~~~~~~~~~~~~~~ 241 (295)
T 3ugc_A 165 PQDKEFFKVKEPGESPIFWYAPESLTESKFSVASDVWSFGVVLYELFTYIEKSKSPPA---EFMRMIGNDKQGQMIVFHL 241 (295)
T ss_dssp -----------CTTCGGGGCCHHHHHHCCCCHHHHHHHHHHHHHHHHHTTCTTCSHHH---HHHHHHCTTCCTHHHHHHH
T ss_pred cCCcceeeeccCCCCccceeCcHHhcCCCCChHHHHHHHHHHHHHHHhcccccCCChH---HHHhhhcCccccchhHHHH
Confidence 543221 222334577889999999888999999999999999999999999865211 111111110000000 00
Q ss_pred ccccchhhhhhhhhhHHHHHHHHHHHhhccCCCCCCCCCHHHHHHHHHHhHHhhc
Q 005040 656 VDANLVREEQAFSDKMDCLFSIMDLALDCCMDTPHKRIHMTDAAAKLRKIKAKFL 710 (717)
Q Consensus 656 ~~~~~~~~~~~~~~~~~~~~~l~~li~~cl~~~P~~Rpt~~ev~~~L~~~~~~~~ 710 (717)
.+ .+ ......+.+..++.++.+++.+||+.||++|||++|+++.|+++++...
T Consensus 242 ~~-~~-~~~~~~~~~~~~~~~l~~li~~~l~~dp~~Rps~~el~~~L~~l~~~l~ 294 (295)
T 3ugc_A 242 IE-LL-KNNGRLPRPDGCPDEIYMIMTECWNNNVNQRPSFRDLALRVDQIRDNMA 294 (295)
T ss_dssp HH-HH-HTTCCCCCCTTCCHHHHHHHHHHSCSSGGGSCCHHHHHHHHHHHHHC--
T ss_pred HH-HH-hccCcCCCCcCcCHHHHHHHHHHcCCChhhCCCHHHHHHHHHHHHHhcc
Confidence 00 00 0001112233566789999999999999999999999999999987654
No 29
>3p86_A Serine/threonine-protein kinase CTR1; ETR1, ERS1, ETR2, phosphorylation, transferase; HET: STU; 2.50A {Arabidopsis thaliana} PDB: 3ppz_A*
Probab=100.00 E-value=5.4e-43 Score=362.24 Aligned_cols=262 Identities=27% Similarity=0.397 Sum_probs=204.8
Q ss_pred HHhccCCccccccccccEEEEEEEecCCCeEEEEEechhh--HHHHHHHHHHHHHHHhcCCCceeeEeeeeecCCeeEEE
Q 005040 424 RATDEFNECNLLGTGGFGSVYKGTLSDGTNVAIKIFNLQL--ERAFRSFDSECEILRNVRHRNLLKILGSCSNLDFKALV 501 (717)
Q Consensus 424 ~~~~~~~~~~~lg~G~~g~V~~~~~~~~~~vavK~~~~~~--~~~~~~~~~e~~~l~~l~hpniv~~~~~~~~~~~~~lv 501 (717)
....+|++.+.||+|+||+||+|+. +++.||||++.... ....+.+.+|++++++++||||+++++++.+.+..++|
T Consensus 34 i~~~~y~i~~~lG~G~~g~V~~~~~-~~~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~hp~iv~~~~~~~~~~~~~lv 112 (309)
T 3p86_A 34 IPWCDLNIKEKIGAGSFGTVHRAEW-HGSDVAVKILMEQDFHAERVNEFLREVAIMKRLRHPNIVLFMGAVTQPPNLSIV 112 (309)
T ss_dssp CCGGGEEEEEEEEECSSEEEEEEEE-TTEEEEEEEECCCCCSHHHHHHHHHHHHHHHHCCCTTBCCEEEEECSTTCCEEE
T ss_pred CChhHceeeeEeecCCCeEEEEEEE-CCCcEEEEEecCCCCCHHHHHHHHHHHHHHHhCCCCCEeeEEEEEEECCceEEE
Confidence 3457899999999999999999987 68899999986543 34456788999999999999999999999999999999
Q ss_pred EEccCCCCHHHHHhhCCC--CCCHHHHHHHHHHHHHHHHHHhhcCCCCC--eEecCCCCCCeeeCCCCcEEEeeeccccc
Q 005040 502 LEFMPNGSLEKWLYSHNY--FLDILQRLNIMIDVGSALEYLHHCHSSAP--IIHCDLKPTNILLDENMVAHVSDFGISKL 577 (717)
Q Consensus 502 ~e~~~~g~L~~~l~~~~~--~~~~~~~~~i~~~i~~~l~~LH~~~~~~~--ivH~dlk~~Nill~~~~~~kl~Dfgl~~~ 577 (717)
|||+++|+|.+++..... .+++..+..++.|++.||+||| +.+ |+||||||+||+++.++.+||+|||+++.
T Consensus 113 ~e~~~~~~L~~~l~~~~~~~~~~~~~~~~i~~qi~~aL~~LH----~~~~~ivH~Dikp~NIll~~~~~~kL~Dfg~a~~ 188 (309)
T 3p86_A 113 TEYLSRGSLYRLLHKSGAREQLDERRRLSMAYDVAKGMNYLH----NRNPPIVHRNLKSPNLLVDKKYTVKVCDFGLSRL 188 (309)
T ss_dssp EECCTTCBHHHHHHSTTHHHHSCHHHHHHHHHHHHHHHHHHH----TSSSCCCCTTCCGGGEEECTTCCEEECCCC----
T ss_pred EecCCCCcHHHHHhhcCCCCCCCHHHHHHHHHHHHHHHHHHH----cCCCCEECCCCChhhEEEeCCCcEEECCCCCCcc
Confidence 999999999999986542 3899999999999999999999 667 99999999999999999999999999986
Q ss_pred cCCCCCceeeeccccCccccCCCccCCCCcCcccchhhHHHHHHHHHhCCCCCCccccCcchHHHHHHhhCCCchhhhcc
Q 005040 578 LGEGEDSVIQTMTMATIGYMAPEYGSEGIVSTKCDVYSYGVLLMETFTEKKPTDEMFTGEMSLRRWVKESLPHRLTEVVD 657 (717)
Q Consensus 578 ~~~~~~~~~~~~~~~t~~y~aPE~~~~~~~~~~~Dvws~G~il~el~tg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 657 (717)
..... .......||+.|+|||++.+..++.++||||||+++|||++|+.||...... .....+......
T Consensus 189 ~~~~~--~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~elltg~~Pf~~~~~~--~~~~~~~~~~~~------- 257 (309)
T 3p86_A 189 KASTF--LSSKSAAGTPEWMAPEVLRDEPSNEKSDVYSFGVILWELATLQQPWGNLNPA--QVVAAVGFKCKR------- 257 (309)
T ss_dssp ---------------CCTTSCHHHHTTCCCCTTHHHHHHHHHHHHHHHCCCTTTTSCHH--HHHHHHHHSCCC-------
T ss_pred ccccc--cccccCCCCccccChhhhcCCCCCchhhHHHHHHHHHHHHhCCCCCCCCCHH--HHHHHHHhcCCC-------
Confidence 53321 1223456899999999999999999999999999999999999999763221 111111111000
Q ss_pred ccchhhhhhhhhhHHHHHHHHHHHhhccCCCCCCCCCHHHHHHHHHHhHHhhc
Q 005040 658 ANLVREEQAFSDKMDCLFSIMDLALDCCMDTPHKRIHMTDAAAKLRKIKAKFL 710 (717)
Q Consensus 658 ~~~~~~~~~~~~~~~~~~~l~~li~~cl~~~P~~Rpt~~ev~~~L~~~~~~~~ 710 (717)
...+..++.++.+++.+||+.||++|||++|+++.|+.+.+...
T Consensus 258 ---------~~~~~~~~~~l~~li~~~l~~dP~~Rps~~~ll~~L~~~~~~~~ 301 (309)
T 3p86_A 258 ---------LEIPRNLNPQVAAIIEGCWTNEPWKRPSFATIMDLLRPLIKSAV 301 (309)
T ss_dssp ---------CCCCTTSCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHHC---
T ss_pred ---------CCCCccCCHHHHHHHHHHccCChhhCcCHHHHHHHHHHHHHhCC
Confidence 00112344568899999999999999999999999999876543
No 30
>3lb7_A RAF proto-oncogene serine/threonine-protein kinas; kinase domain, alternative splicing, ATP-binding, disease MU kinase, metal-binding; 4.00A {Homo sapiens} PDB: 3omv_A*
Probab=100.00 E-value=1.4e-42 Score=358.84 Aligned_cols=263 Identities=27% Similarity=0.452 Sum_probs=207.2
Q ss_pred hccCCccccccccccEEEEEEEecCCCeEEEEEechhh--HHHHHHHHHHHHHHHhcCCCceeeEeeeeecCCeeEEEEE
Q 005040 426 TDEFNECNLLGTGGFGSVYKGTLSDGTNVAIKIFNLQL--ERAFRSFDSECEILRNVRHRNLLKILGSCSNLDFKALVLE 503 (717)
Q Consensus 426 ~~~~~~~~~lg~G~~g~V~~~~~~~~~~vavK~~~~~~--~~~~~~~~~e~~~l~~l~hpniv~~~~~~~~~~~~~lv~e 503 (717)
.++|++.+.||+|+||.||+|.+. ..+|+|+++... ....+.+.+|++++++++||||+++++++.. +..++|||
T Consensus 35 ~~~~~~~~~lG~G~~g~Vy~~~~~--~~~avk~~k~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~-~~~~lv~e 111 (307)
T 3lb7_A 35 ASEVMLSTRIGSGSFGTVYKGKWH--GDVAVKILKVVDPTPEQFQAFRNEVAVLRKTRHVNILLFMGYMTK-DNLAIVTQ 111 (307)
T ss_dssp TTSCCEEEEEEECSSCEEEEEESS--SEEEEEECCCSSCCHHHHHHHHHHHHHHTTCCCTTBCCEEEEECS-SSCEEEEE
T ss_pred ccceEEEeEecCCCCeEEEEEEEC--CEEEEEEEecCCCCHHHHHHHHHHHHHHHhCCCCCEEEEEEEEcc-CcEEEEEe
Confidence 468999999999999999999864 358899886432 3455778999999999999999999998754 55799999
Q ss_pred ccCCCCHHHHHhhCCCCCCHHHHHHHHHHHHHHHHHHhhcCCCCCeEecCCCCCCeeeCCCCcEEEeeeccccccCCCCC
Q 005040 504 FMPNGSLEKWLYSHNYFLDILQRLNIMIDVGSALEYLHHCHSSAPIIHCDLKPTNILLDENMVAHVSDFGISKLLGEGED 583 (717)
Q Consensus 504 ~~~~g~L~~~l~~~~~~~~~~~~~~i~~~i~~~l~~LH~~~~~~~ivH~dlk~~Nill~~~~~~kl~Dfgl~~~~~~~~~ 583 (717)
|+++++|.+++......+++..+..++.|++.||+||| +.+|+||||||+||+++.++.+||+|||++........
T Consensus 112 ~~~~~~L~~~l~~~~~~~~~~~~~~i~~qi~~~L~~LH----~~~ivH~Dlkp~NIll~~~~~~kl~DFg~a~~~~~~~~ 187 (307)
T 3lb7_A 112 WCEGSSLYKHLHVQETKFQMFQLIDIARQTAQGMDYLH----AKNIIHRDMKSNNIFLHEGLTVKIGDFGLATVKSRWSG 187 (307)
T ss_dssp CCSSCBHHHHHHTSCCCCCHHHHHHHHHHHHHHHHHHH----HTTCCCSCCCSSSEEECTTSCEEECCCCSSCC------
T ss_pred cCCCCcHHHHHHhcccCCCHHHHHHHHHHHHHHHHHHH----hCCEeeCCCChhhEEEcCCCCEEEccCCCceecccccc
Confidence 99999999999877777999999999999999999999 67899999999999999999999999999986543333
Q ss_pred ceeeeccccCccccCCCccC---CCCcCcccchhhHHHHHHHHHhCCCCCCccccCcchHHHHHHhhC-CCchhhhcccc
Q 005040 584 SVIQTMTMATIGYMAPEYGS---EGIVSTKCDVYSYGVLLMETFTEKKPTDEMFTGEMSLRRWVKESL-PHRLTEVVDAN 659 (717)
Q Consensus 584 ~~~~~~~~~t~~y~aPE~~~---~~~~~~~~Dvws~G~il~el~tg~~p~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~ 659 (717)
........||+.|+|||++. +..++.++||||||+++|||++|+.||......+ .....+.... .......
T Consensus 188 ~~~~~~~~gt~~y~aPE~~~~~~~~~~~~~~Di~slG~il~elltg~~Pf~~~~~~~-~~~~~~~~~~~~~~~~~~---- 262 (307)
T 3lb7_A 188 SQQVEQPTGSVLWMAPEVIRMQDNNPFSFQSDVYSYGIVLYELMTGELPYSHINNRD-QIIFMVGRGYASPDLSKL---- 262 (307)
T ss_dssp ------CCCCTTSCCHHHHHCCSSCCCCHHHHHHHHHHHHHHHHHSSCTTTTCCCHH-HHHHHHHHTCCCCCSTTS----
T ss_pred cccccCCCCCcceECcceeeccCCCCCCchhhHHHHHHHHHHHHhCCCCCccCCcHH-HHHHHHhcCCCCcchhhh----
Confidence 33334457899999999775 6678999999999999999999999997643221 1111111111 1111100
Q ss_pred chhhhhhhhhhHHHHHHHHHHHhhccCCCCCCCCCHHHHHHHHHHhHHhhc
Q 005040 660 LVREEQAFSDKMDCLFSIMDLALDCCMDTPHKRIHMTDAAAKLRKIKAKFL 710 (717)
Q Consensus 660 ~~~~~~~~~~~~~~~~~l~~li~~cl~~~P~~Rpt~~ev~~~L~~~~~~~~ 710 (717)
...++..+.+++.+||+.+|++||++.|+++.|+.+...++
T Consensus 263 ----------~~~~~~~l~~li~~~l~~~p~~RPs~~~il~~l~~l~~~~p 303 (307)
T 3lb7_A 263 ----------YKNCPKAMKRLVADCVKKVKEERPLFPQILSSIELLQHSLP 303 (307)
T ss_dssp ----------CSSSCHHHHHHHHHHSCSSSTTSCCHHHHHHHHHHHHTTCC
T ss_pred ----------hcCCcHHHHHHHHHHhhCChhhCcCHHHHHHHHHHHHhhcc
Confidence 11345678899999999999999999999999999877664
No 31
>3kul_A Ephrin type-A receptor 8; ATP-binding, kinase, nucleotide-binding, transfera phosphorylation, transmembrane, tyrosine-protein kinase; HET: PTR; 2.15A {Homo sapiens}
Probab=100.00 E-value=7e-43 Score=364.25 Aligned_cols=263 Identities=29% Similarity=0.462 Sum_probs=213.4
Q ss_pred hccCCccccccccccEEEEEEEec----CCCeEEEEEechhh-HHHHHHHHHHHHHHHhcCCCceeeEeeeeecCCeeEE
Q 005040 426 TDEFNECNLLGTGGFGSVYKGTLS----DGTNVAIKIFNLQL-ERAFRSFDSECEILRNVRHRNLLKILGSCSNLDFKAL 500 (717)
Q Consensus 426 ~~~~~~~~~lg~G~~g~V~~~~~~----~~~~vavK~~~~~~-~~~~~~~~~e~~~l~~l~hpniv~~~~~~~~~~~~~l 500 (717)
.++|++.+.||+|+||.||+|.+. .+..||||+++... ....+.+.+|++++++++||||+++++++.+.+..++
T Consensus 48 ~~~y~i~~~lG~G~~g~V~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~l 127 (325)
T 3kul_A 48 ASRIHIEKIIGSGDSGEVCYGRLRVPGQRDVPVAIKALKAGYTERQRRDFLSEASIMGQFDHPNIIRLEGVVTRGRLAMI 127 (325)
T ss_dssp GGGEEEEEEEEETTTEEEEEEEECCTTSCCEEEEEEEECTTCCHHHHHHHHHHHHHHTTCCCTTBCCEEEEECGGGCCEE
T ss_pred hhHeEEeeEEEeCCCcEEEEEEEecCCCCCceEEEEecCCCCCHHHHHHHHHHHHHHHhCCCCCCCcEEEEEEeCCccEE
Confidence 368899999999999999999974 34469999997653 4445678999999999999999999999999999999
Q ss_pred EEEccCCCCHHHHHhhCCCCCCHHHHHHHHHHHHHHHHHHhhcCCCCCeEecCCCCCCeeeCCCCcEEEeeeccccccCC
Q 005040 501 VLEFMPNGSLEKWLYSHNYFLDILQRLNIMIDVGSALEYLHHCHSSAPIIHCDLKPTNILLDENMVAHVSDFGISKLLGE 580 (717)
Q Consensus 501 v~e~~~~g~L~~~l~~~~~~~~~~~~~~i~~~i~~~l~~LH~~~~~~~ivH~dlk~~Nill~~~~~~kl~Dfgl~~~~~~ 580 (717)
||||+++|+|.++++.....+++..+..++.|++.||.||| +.+|+||||||+||+++.++.+||+|||+++....
T Consensus 128 v~e~~~~~~L~~~l~~~~~~~~~~~~~~i~~qi~~~L~~LH----~~~ivH~Dlkp~NIll~~~~~~kl~Dfg~a~~~~~ 203 (325)
T 3kul_A 128 VTEYMENGSLDTFLRTHDGQFTIMQLVGMLRGVGAGMRYLS----DLGYVHRDLAARNVLVDSNLVCKVSDFGLSRVLED 203 (325)
T ss_dssp EEECCTTCBHHHHHHTTTTCSCHHHHHHHHHHHHHHHHHHH----HTTEECSCCSGGGEEECTTCCEEECCCSSCEECC-
T ss_pred EeeCCCCCcHHHHHHhcccCCCHHHHHHHHHHHHHHHHHHH----HCCeeCCCCCcceEEECCCCCEEECCCCccccccc
Confidence 99999999999999877667999999999999999999999 67899999999999999999999999999987754
Q ss_pred CCCc-eeeeccccCccccCCCccCCCCcCcccchhhHHHHHHHHHh-CCCCCCccccCcchHHHHHHhhCCCchhhhccc
Q 005040 581 GEDS-VIQTMTMATIGYMAPEYGSEGIVSTKCDVYSYGVLLMETFT-EKKPTDEMFTGEMSLRRWVKESLPHRLTEVVDA 658 (717)
Q Consensus 581 ~~~~-~~~~~~~~t~~y~aPE~~~~~~~~~~~Dvws~G~il~el~t-g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 658 (717)
.... .......+|+.|+|||++.+..++.++||||||+++|||++ |+.||...... .....+.....
T Consensus 204 ~~~~~~~~~~~~~t~~y~aPE~~~~~~~~~~~Di~slG~il~ell~~g~~p~~~~~~~--~~~~~~~~~~~--------- 272 (325)
T 3kul_A 204 DPDAAYTTTGGKIPIRWTAPEAIAFRTFSSASDVWSFGVVMWEVLAYGERPYWNMTNR--DVISSVEEGYR--------- 272 (325)
T ss_dssp ---CCEECC---CCGGGSCHHHHHHCEECHHHHHHHHHHHHHHHHTTSCCTTTTSCHH--HHHHHHHTTCC---------
T ss_pred CccceeeccCCCCcccccCHhHhcCCCCCcHHHHHHHHHHHHHHHcCCCCCcccCCHH--HHHHHHHcCCC---------
Confidence 3222 22233356788999999988899999999999999999999 99999763221 11111111100
Q ss_pred cchhhhhhhhhhHHHHHHHHHHHhhccCCCCCCCCCHHHHHHHHHHhHHhhcc
Q 005040 659 NLVREEQAFSDKMDCLFSIMDLALDCCMDTPHKRIHMTDAAAKLRKIKAKFLD 711 (717)
Q Consensus 659 ~~~~~~~~~~~~~~~~~~l~~li~~cl~~~P~~Rpt~~ev~~~L~~~~~~~~~ 711 (717)
.+....++.++.+++.+||+.||++|||+.|+++.|+++.+....
T Consensus 273 --------~~~~~~~~~~l~~li~~~l~~dp~~Rps~~eil~~L~~l~~~~~~ 317 (325)
T 3kul_A 273 --------LPAPMGCPHALHQLMLDCWHKDRAQRPRFSQIVSVLDALIRSPES 317 (325)
T ss_dssp --------CCCCTTCCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHHHSCC-
T ss_pred --------CCCCCCcCHHHHHHHHHHccCChhhCcCHHHHHHHHHHHHhCccc
Confidence 011123456788999999999999999999999999999775543
No 32
>2nru_A Interleukin-1 receptor-associated kinase 4; inhibitor, IRAK, transferase; HET: TPO SEP T12; 2.00A {Homo sapiens} PDB: 2nry_A* 2oib_A* 2oic_A* 2oid_A* 2o8y_A*
Probab=100.00 E-value=9.3e-42 Score=353.46 Aligned_cols=281 Identities=30% Similarity=0.479 Sum_probs=228.5
Q ss_pred cCCCCHHHHHHHhccCCcc------ccccccccEEEEEEEecCCCeEEEEEechhh----HHHHHHHHHHHHHHHhcCCC
Q 005040 414 RRRTSYLDIRRATDEFNEC------NLLGTGGFGSVYKGTLSDGTNVAIKIFNLQL----ERAFRSFDSECEILRNVRHR 483 (717)
Q Consensus 414 ~~~~~~~~~~~~~~~~~~~------~~lg~G~~g~V~~~~~~~~~~vavK~~~~~~----~~~~~~~~~e~~~l~~l~hp 483 (717)
...+++.++..++..|... +.||+|+||.||+|.. +++.||||++.... ....+.+.+|++++++++||
T Consensus 12 ~~~~~~~~l~~~~~~f~~~~~~~~~~~lg~G~~g~Vy~~~~-~~~~vavK~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~ 90 (307)
T 2nru_A 12 FHSFSFYELKNVTNNFDERPISVGGNKMGEGGFGVVYKGYV-NNTTVAVKKLAAMVDITTEELKQQFDQEIKVMAKCQHE 90 (307)
T ss_dssp CEECCHHHHHHHTTTTCCSBTTTTCCEEEECSSEEEEEEES-SSCEEEEEEECCCTTSCTTTHHHHHHHHHHHHHHCCCT
T ss_pred CCcccHHHHHHHHcccccccccccCCccccCCCeEEEEEEE-CCceEEEEEEecccCcchHHHHHHHHHHHHHHHhcCCC
Confidence 4567889999999999887 8899999999999997 68899999986432 33456788999999999999
Q ss_pred ceeeEeeeeecCCeeEEEEEccCCCCHHHHHhhC--CCCCCHHHHHHHHHHHHHHHHHHhhcCCCCCeEecCCCCCCeee
Q 005040 484 NLLKILGSCSNLDFKALVLEFMPNGSLEKWLYSH--NYFLDILQRLNIMIDVGSALEYLHHCHSSAPIIHCDLKPTNILL 561 (717)
Q Consensus 484 niv~~~~~~~~~~~~~lv~e~~~~g~L~~~l~~~--~~~~~~~~~~~i~~~i~~~l~~LH~~~~~~~ivH~dlk~~Nill 561 (717)
||+++++++.+.+..++||||+++|+|.+++... ...+++..+..++.|++.||.||| +.+|+||||||+||++
T Consensus 91 ~i~~~~~~~~~~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~i~~~i~~~l~~lH----~~~i~H~dlkp~Nili 166 (307)
T 2nru_A 91 NLVELLGFSSDGDDLCLVYVYMPNGSLLDRLSCLDGTPPLSWHMRCKIAQGAANGINFLH----ENHHIHRDIKSANILL 166 (307)
T ss_dssp TBCCEEEEECSSSSCEEEEECCTTCBHHHHHHTGGGCCCCCHHHHHHHHHHHHHHHHHHH----HTTEECSCCCGGGEEE
T ss_pred CeEEEEEEEecCCceEEEEEecCCCcHHHHHHhccCCCCCCHHHHHHHHHHHHHHHHHHh----cCCeecCCCCHHHEEE
Confidence 9999999999999999999999999999999743 345899999999999999999999 6789999999999999
Q ss_pred CCCCcEEEeeeccccccCCCCCceeeeccccCccccCCCccCCCCcCcccchhhHHHHHHHHHhCCCCCCccccCcchHH
Q 005040 562 DENMVAHVSDFGISKLLGEGEDSVIQTMTMATIGYMAPEYGSEGIVSTKCDVYSYGVLLMETFTEKKPTDEMFTGEMSLR 641 (717)
Q Consensus 562 ~~~~~~kl~Dfgl~~~~~~~~~~~~~~~~~~t~~y~aPE~~~~~~~~~~~Dvws~G~il~el~tg~~p~~~~~~~~~~~~ 641 (717)
+.++.+||+|||++................||+.|+|||.+.+ .++.++||||||+++|||++|+.||....... ...
T Consensus 167 ~~~~~~kl~Dfg~~~~~~~~~~~~~~~~~~g~~~y~aPE~~~~-~~~~~~Dv~slG~il~~l~~g~~p~~~~~~~~-~~~ 244 (307)
T 2nru_A 167 DEAFTAKISDFGLARASEKFAQTVMTSRIVGTTAYMAPEALRG-EITPKSDIYSFGVVLLEIITGLPAVDEHREPQ-LLL 244 (307)
T ss_dssp CTTCCEEECCCTTCEECCSCSSCEECSSCCSCGGGCCHHHHTT-EECTHHHHHHHHHHHHHHHHCCCSBCTTBSSS-BTT
T ss_pred cCCCcEEEeecccccccccccccccccccCCCcCcCChHHhcC-CCCccchhHHHHHHHHHHHHCCCCcccCcchH-HHH
Confidence 9999999999999987655443333445578999999998765 58899999999999999999999997643332 122
Q ss_pred HHHHh--hCCCchhhhccccchhhhhhhhhhHHHHHHHHHHHhhccCCCCCCCCCHHHHHHHHHHhHH
Q 005040 642 RWVKE--SLPHRLTEVVDANLVREEQAFSDKMDCLFSIMDLALDCCMDTPHKRIHMTDAAAKLRKIKA 707 (717)
Q Consensus 642 ~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~cl~~~P~~Rpt~~ev~~~L~~~~~ 707 (717)
.+... .....+.+.++..+.. ....++..+.+++.+||+.||++|||+.++++.|+++.+
T Consensus 245 ~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~l~~li~~cl~~~p~~Rps~~~l~~~L~~l~~ 306 (307)
T 2nru_A 245 DIKEEIEDEEKTIEDYIDKKMND------ADSTSVEAMYSVASQCLHEKKNKRPDIKKVQQLLQEMTA 306 (307)
T ss_dssp HHHHHHHTTSCCHHHHSCSSCSC------CCHHHHHHHHHHHHHHTCSSTTTSCCHHHHHHHHHHHC-
T ss_pred HHHHHhhhhhhhhhhhccccccc------cchHHHHHHHHHHHHHcCCCcccCcCHHHHHHHHHHHhc
Confidence 22221 1122233334433321 123556789999999999999999999999999998864
No 33
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=100.00 E-value=1.1e-41 Score=396.29 Aligned_cols=334 Identities=33% Similarity=0.533 Sum_probs=263.6
Q ss_pred CCCCccccCC-CCCcEEECCCCcceecCCcCCCCCCCCCEEEccccccc-CccCCcccccccccccCccCCcEEeccCCC
Q 005040 2 GTIPNSITNA-TKLIGLDLGLNSFSGHIPNTFGNLRHLSVLSLMMNNLT-TESSSADQWSFLSSLTNCRNLANLALASNP 79 (717)
Q Consensus 2 ~~iP~~~~~l-~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~-~~~~~~~~~~~~~~l~~l~~L~~L~L~~N~ 79 (717)
|.+|..+..+ ++|++|+|++|.+++..|..|+++++|++|+|++|+++ .++.. .+..+++|++|+|++|+
T Consensus 283 ~~ip~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~ip~~--------~l~~l~~L~~L~Ls~n~ 354 (768)
T 3rgz_A 283 GEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGELPMD--------TLLKMRGLKVLDLSFNE 354 (768)
T ss_dssp ESCCCCSCTTCTTCSEEECCSSEEEECCCGGGGGCTTCCEEECCSSEEEEECCHH--------HHTTCTTCCEEECCSSE
T ss_pred CccCHHHHhhcCcCCEEECcCCcCCCccchHHhcCCCccEEECCCCcccCcCCHH--------HHhcCCCCCEEeCcCCc
Confidence 4789999886 99999999999999999999999999999999999998 44422 26677777777777777
Q ss_pred CcccCCcchhccc--------------------------cccceeeecCCcceecCCccccCCCCCcEEEccCCCCcccC
Q 005040 80 LGGILPPLIGNFS--------------------------ASLQNIYAFECKLGGSIPKEIGNLRGLIVLSLGFNDLNGTI 133 (717)
Q Consensus 80 l~~~~~~~~~~l~--------------------------~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~ 133 (717)
+++..|..+..++ ++|++|++++|++.+.+|..+.++++|++|+|++|.+++..
T Consensus 355 l~~~~p~~l~~l~~~L~~L~Ls~N~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~ 434 (768)
T 3rgz_A 355 FSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTI 434 (768)
T ss_dssp EEECCCTTHHHHTTTCSEEECCSSEEEEECCTTTTCSTTCCCCEEECCSSEEEEECCGGGGGCTTCCEEECCSSEEESCC
T ss_pred cCccccHHHHhhhcCCcEEEccCCCcCCCcChhhhhcccCCccEEECCCCccccccCHHHhcCCCCCEEECcCCcccCcc
Confidence 7766676666553 24555666666666666777777777777777777777777
Q ss_pred CccccccCCCCEEeccCCcccccCCccccCCCCCCEEeccCCcCcccCCccccCCCCCCeEEecCccccCCCChhhhccc
Q 005040 134 PTSIGTLQQLQGFYVPENNLQGYVPHDLCHLERLNILNLSGNKLSGAIPQCLASLTSLRSLYLQSNKLSSSLPSSLWSLE 213 (717)
Q Consensus 134 ~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~ 213 (717)
|..|.++++|+.|++++|.+.+..|..+..+++|++|+|++|++++.+|..+.++++|++|+|++|++++.+|.++..++
T Consensus 435 p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~ 514 (768)
T 3rgz_A 435 PSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLE 514 (768)
T ss_dssp CGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCT
T ss_pred cHHHhcCCCCCEEECCCCcccCcCCHHHcCCCCceEEEecCCcccCcCCHHHhcCCCCCEEEccCCccCCcCChHHhcCC
Confidence 77777777788888888877777777777788888888888888877777788888888888888888877888888888
Q ss_pred CCCeEEccCCcCcccCCccccCCCCCCeEEccCCCCCCCCcccc------------------------------------
Q 005040 214 YILRINLSSNSLKGTLPSNIQKLNVLIDLDLSRNQLSSDIPSTI------------------------------------ 257 (717)
Q Consensus 214 ~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~------------------------------------ 257 (717)
+|+.|+|++|++++.+|..+..+++|+.|++++|.+++.+|..+
T Consensus 515 ~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 594 (768)
T 3rgz_A 515 NLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLL 594 (768)
T ss_dssp TCCEEECCSSCCEEECCGGGGGCTTCCEEECCSSEEESBCCGGGGTTTTCBCCSTTCSCEEEEEECCSCCTTCCSSEEEE
T ss_pred CCCEEECCCCcccCcCCHHHcCCCCCCEEECCCCccCCcCChHHhcccchhhhhcccccccccccccccccccccccccc
Confidence 88888888888888888888888888888888888776555432
Q ss_pred ----------------------------------cCCcccccccccCccccCCCCccccccCccceEeccCCCCCCCCcc
Q 005040 258 ----------------------------------GTLKNLETLSLAGNQFQGPIPESVGNLISLESLDFSNNNLSGKIPK 303 (717)
Q Consensus 258 ----------------------------------~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~~~~~~ 303 (717)
+.+++|++|+|++|++++.+|..++++++|+.|+|++|++++.+|.
T Consensus 595 ~~~~~~~~~~~~l~~~~~~~l~~~~~~g~~~~~~~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~ip~ 674 (768)
T 3rgz_A 595 EFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPD 674 (768)
T ss_dssp ECTTCCGGGGGGGGGTCCSCTTSCEEEEECCCSCSSSBCCCEEECCSSCCBSCCCGGGGGCTTCCEEECCSSCCCSCCCG
T ss_pred ccccccchhhhccccccccccccceecccCchhhhccccccEEECcCCcccccCCHHHhccccCCEEeCcCCccCCCCCh
Confidence 3346778888888888888888888888888888888888888888
Q ss_pred cccccccccEEEccCCccccccccc-ccccccccccccCCc
Q 005040 304 SLEALSHLKQFNVSHNRLEGEIPVK-GSFKDFSAQSYFGNY 343 (717)
Q Consensus 304 ~~~~l~~L~~L~l~~N~l~~~~p~~-~~~~~~~~~~~~~n~ 343 (717)
.+..+++|+.|||++|+++|.+|.. +.+..+..+.+..|+
T Consensus 675 ~l~~L~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~ls~N~ 715 (768)
T 3rgz_A 675 EVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDLSNNN 715 (768)
T ss_dssp GGGGCTTCCEEECCSSCCEECCCGGGGGCCCCSEEECCSSE
T ss_pred HHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECcCCc
Confidence 8888888888888888888888764 455556666666554
No 34
>2c30_A Serine/threonine-protein kinase PAK 6; CRIB domain, ATP-binding, transferase, nucleotide-binding; HET: SEP; 1.6A {Homo sapiens} PDB: 2f57_A* 2j0i_A* 2cdz_A* 2q0n_A* 2x4z_A* 2bva_A*
Probab=100.00 E-value=3.2e-42 Score=358.58 Aligned_cols=262 Identities=22% Similarity=0.300 Sum_probs=213.8
Q ss_pred CCCCHHHHHHHhcc----------CCccccccccccEEEEEEEec-CCCeEEEEEechhhHHHHHHHHHHHHHHHhcCCC
Q 005040 415 RRTSYLDIRRATDE----------FNECNLLGTGGFGSVYKGTLS-DGTNVAIKIFNLQLERAFRSFDSECEILRNVRHR 483 (717)
Q Consensus 415 ~~~~~~~~~~~~~~----------~~~~~~lg~G~~g~V~~~~~~-~~~~vavK~~~~~~~~~~~~~~~e~~~l~~l~hp 483 (717)
..+++.+++.+++. |+..+.||+|+||.||+|... +|+.||||++........+.+.+|+.++++++||
T Consensus 23 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lg~G~~g~V~~a~~~~~g~~vavK~~~~~~~~~~~~~~~E~~~l~~l~h~ 102 (321)
T 2c30_A 23 GVVTHEQFKAALRMVVDQGDPRLLLDSYVKIGEGSTGIVCLAREKHSGRQVAVKMMDLRKQQRRELLFNEVVIMRDYQHF 102 (321)
T ss_dssp --CCHHHHHHHHHTTSCSSCHHHHEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEETTTCCSHHHHHHHHHHHTTCCCT
T ss_pred CcCcHHHHHHHHhhccCCCCchhhhhccEEeccCCCeEEEEEEECCCCcEEEEEEEeccchhHHHHHHHHHHHHHhCCCC
Confidence 34666777776653 677789999999999999976 7999999999866655567788999999999999
Q ss_pred ceeeEeeeeecCCeeEEEEEccCCCCHHHHHhhCCCCCCHHHHHHHHHHHHHHHHHHhhcCCCCCeEecCCCCCCeeeCC
Q 005040 484 NLLKILGSCSNLDFKALVLEFMPNGSLEKWLYSHNYFLDILQRLNIMIDVGSALEYLHHCHSSAPIIHCDLKPTNILLDE 563 (717)
Q Consensus 484 niv~~~~~~~~~~~~~lv~e~~~~g~L~~~l~~~~~~~~~~~~~~i~~~i~~~l~~LH~~~~~~~ivH~dlk~~Nill~~ 563 (717)
||+++++++...+..++||||+++|+|.+++... .+++..+..++.|++.||.||| +.+|+||||||+||+++.
T Consensus 103 niv~~~~~~~~~~~~~lv~e~~~~~~L~~~l~~~--~l~~~~~~~i~~qi~~~L~~LH----~~~ivH~Dlkp~NIll~~ 176 (321)
T 2c30_A 103 NVVEMYKSYLVGEELWVLMEFLQGGALTDIVSQV--RLNEEQIATVCEAVLQALAYLH----AQGVIHRDIKSDSILLTL 176 (321)
T ss_dssp TBCCEEEEEEETTEEEEEECCCCSCBHHHHHTTC--CCCHHHHHHHHHHHHHHHHHHH----HTTEECCCCSGGGEEECT
T ss_pred CcceEEEEEEECCEEEEEEecCCCCCHHHHHHhc--CCCHHHHHHHHHHHHHHHHHHH----HCCeecCCCCHHHEEECC
Confidence 9999999999999999999999999999998764 4899999999999999999999 678999999999999999
Q ss_pred CCcEEEeeeccccccCCCCCceeeeccccCccccCCCccCCCCcCcccchhhHHHHHHHHHhCCCCCCccccCcchHHHH
Q 005040 564 NMVAHVSDFGISKLLGEGEDSVIQTMTMATIGYMAPEYGSEGIVSTKCDVYSYGVLLMETFTEKKPTDEMFTGEMSLRRW 643 (717)
Q Consensus 564 ~~~~kl~Dfgl~~~~~~~~~~~~~~~~~~t~~y~aPE~~~~~~~~~~~Dvws~G~il~el~tg~~p~~~~~~~~~~~~~~ 643 (717)
++.+||+|||++........ ......||+.|+|||++.+..++.++||||||+++|||++|+.||..... ......
T Consensus 177 ~~~~kl~Dfg~~~~~~~~~~--~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~slG~il~el~~g~~pf~~~~~--~~~~~~ 252 (321)
T 2c30_A 177 DGRVKLSDFGFCAQISKDVP--KRKSLVGTPYWMAPEVISRSLYATEVDIWSLGIMVIEMVDGEPPYFSDSP--VQAMKR 252 (321)
T ss_dssp TCCEEECCCTTCEECCSSSC--CBCCCCSCGGGCCHHHHTTCCBCTHHHHHHHHHHHHHHHHSSCTTTTSCH--HHHHHH
T ss_pred CCcEEEeeeeeeeecccCcc--ccccccCCccccCHhhhcCCCCCchhhHHHHHHHHHHHHhCCCCCCCCCH--HHHHHH
Confidence 99999999999987654322 12345789999999999999999999999999999999999999975321 111111
Q ss_pred HHhhCCCchhhhccccchhhhhhhhhhHHHHHHHHHHHhhccCCCCCCCCCHHHHHHH
Q 005040 644 VKESLPHRLTEVVDANLVREEQAFSDKMDCLFSIMDLALDCCMDTPHKRIHMTDAAAK 701 (717)
Q Consensus 644 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~cl~~~P~~Rpt~~ev~~~ 701 (717)
+....+.. + .....++..+.+++.+||+.||++|||+.|+++.
T Consensus 253 ~~~~~~~~--------~-------~~~~~~~~~l~~li~~~l~~dp~~Rps~~ell~h 295 (321)
T 2c30_A 253 LRDSPPPK--------L-------KNSHKVSPVLRDFLERMLVRDPQERATAQELLDH 295 (321)
T ss_dssp HHHSSCCC--------C-------TTGGGSCHHHHHHHHHHSCSSTTTSCCHHHHHTS
T ss_pred HhcCCCCC--------c-------CccccCCHHHHHHHHHHccCChhhCcCHHHHhcC
Confidence 11111111 0 1112334568899999999999999999999863
No 35
>3fe3_A MAP/microtubule affinity-regulating kinase 3; serine/threonine protein kinase, MARK;PAR-1, UBA domai TAK1;P78;MARK3, ATP-binding; 1.90A {Homo sapiens} PDB: 2qnj_A 1y8g_A* 1zmw_A 1zmu_A 1zmv_A 2wzj_A 2r0i_A 2hak_A 3iec_A
Probab=100.00 E-value=2.1e-42 Score=360.12 Aligned_cols=248 Identities=23% Similarity=0.321 Sum_probs=205.6
Q ss_pred hccCCccccccccccEEEEEEEe-cCCCeEEEEEechhh--HHHHHHHHHHHHHHHhcCCCceeeEeeeeecCCeeEEEE
Q 005040 426 TDEFNECNLLGTGGFGSVYKGTL-SDGTNVAIKIFNLQL--ERAFRSFDSECEILRNVRHRNLLKILGSCSNLDFKALVL 502 (717)
Q Consensus 426 ~~~~~~~~~lg~G~~g~V~~~~~-~~~~~vavK~~~~~~--~~~~~~~~~e~~~l~~l~hpniv~~~~~~~~~~~~~lv~ 502 (717)
.++|++.+.||+|+||.||+|.+ .+|+.||||++.... ....+.+.+|+++++.++||||+++++++.+.+..|+||
T Consensus 14 ~~~y~~~~~lG~G~~g~V~~a~~~~~~~~vaiK~~~~~~~~~~~~~~~~~E~~~l~~l~hpnIv~l~~~~~~~~~~~lv~ 93 (328)
T 3fe3_A 14 IGNYRLLKTIGKGNFAKVKLARHILTGREVAIKIIDKTQLNPTSLQKLFREVRIMKILNHPNIVKLFEVIETEKTLYLIM 93 (328)
T ss_dssp ETTEEEEEEEEECSSEEEEEEEETTTCCEEEEEEEEGGGSCHHHHHHHHHHHHHHHHCCCTTBCCEEEEEECSSEEEEEE
T ss_pred cCCEEEEEEEeeCCCEEEEEEEECCCCCEEEEEEEEhhcCCHHHHHHHHHHHHHHHhCCCCCEeeEEEEEEECCEEEEEE
Confidence 46899999999999999999997 489999999997553 344567889999999999999999999999999999999
Q ss_pred EccCCCCHHHHHhhCCCCCCHHHHHHHHHHHHHHHHHHhhcCCCCCeEecCCCCCCeeeCCCCcEEEeeeccccccCCCC
Q 005040 503 EFMPNGSLEKWLYSHNYFLDILQRLNIMIDVGSALEYLHHCHSSAPIIHCDLKPTNILLDENMVAHVSDFGISKLLGEGE 582 (717)
Q Consensus 503 e~~~~g~L~~~l~~~~~~~~~~~~~~i~~~i~~~l~~LH~~~~~~~ivH~dlk~~Nill~~~~~~kl~Dfgl~~~~~~~~ 582 (717)
||+++|+|.+++...+. +++..+..++.|++.||+||| +.+|+||||||+||+++.++.+||+|||++.......
T Consensus 94 e~~~~~~L~~~l~~~~~-l~~~~~~~~~~qi~~al~~lH----~~~ivHrDlkp~NIll~~~~~~kl~DFG~a~~~~~~~ 168 (328)
T 3fe3_A 94 EYASGGEVFDYLVAHGR-MKEKEARSKFRQIVSAVQYCH----QKRIVHRDLKAENLLLDADMNIKIADFGFSNEFTVGG 168 (328)
T ss_dssp CCCTTCBHHHHHHHHCC-CCHHHHHHHHHHHHHHHHHHH----HTTCCCSCCCGGGEEECTTSCEEECSTTCCGGGSSSC
T ss_pred ECCCCCcHHHHHHHcCC-CCHHHHHHHHHHHHHHHHHHH----HCCEeccCCCHHHEEEcCCCCEEEeeccCceecCCCC
Confidence 99999999999986543 899999999999999999999 6789999999999999999999999999998765432
Q ss_pred CceeeeccccCccccCCCccCCCCcC-cccchhhHHHHHHHHHhCCCCCCccccCcchHHHHHHhhCCCchhhhccccch
Q 005040 583 DSVIQTMTMATIGYMAPEYGSEGIVS-TKCDVYSYGVLLMETFTEKKPTDEMFTGEMSLRRWVKESLPHRLTEVVDANLV 661 (717)
Q Consensus 583 ~~~~~~~~~~t~~y~aPE~~~~~~~~-~~~Dvws~G~il~el~tg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 661 (717)
. ....+||+.|+|||++.+..+. .++||||+||++|||++|+.||.+.... .....+... ..
T Consensus 169 ~---~~~~~gt~~y~aPE~~~~~~~~~~~~DiwslG~il~ell~g~~pf~~~~~~--~~~~~i~~~-----------~~- 231 (328)
T 3fe3_A 169 K---LDAFCGAPPYAAPELFQGKKYDGPEVDVWSLGVILYTLVSGSLPFDGQNLK--ELRERVLRG-----------KY- 231 (328)
T ss_dssp G---GGTTSSSGGGCCHHHHHTCCCCSHHHHHHHHHHHHHHHHHSSCSSCCSSHH--HHHHHHHHC-----------CC-
T ss_pred c---cccccCCcceeCcccccCCCcCCchhhhhhhHHHHHHHHhCCCCCCCCCHH--HHHHHHHhC-----------CC-
Confidence 2 2445799999999998877764 8999999999999999999999763211 111111110 00
Q ss_pred hhhhhhhhhHHHHHHHHHHHhhccCCCCCCCCCHHHHHHH
Q 005040 662 REEQAFSDKMDCLFSIMDLALDCCMDTPHKRIHMTDAAAK 701 (717)
Q Consensus 662 ~~~~~~~~~~~~~~~l~~li~~cl~~~P~~Rpt~~ev~~~ 701 (717)
..+..++.++.+++.+||..||++|||++|+++.
T Consensus 232 ------~~p~~~s~~~~~li~~~L~~dP~~R~t~~eil~h 265 (328)
T 3fe3_A 232 ------RIPFYMSTDCENLLKRFLVLNPIKRGTLEQIMKD 265 (328)
T ss_dssp ------CCCTTSCHHHHHHHHHHCCSSTTTSCCHHHHTTC
T ss_pred ------CCCCCCCHHHHHHHHHHCCCChhHCcCHHHHhcC
Confidence 0011234567899999999999999999999763
No 36
>3vhe_A Vascular endothelial growth factor receptor 2; kinase domain, kinase, transferase-transferase inhibitor COM; HET: 42Q; 1.55A {Homo sapiens} PDB: 1y6a_A* 1y6b_A* 3vhk_A* 3vid_A* 3hng_A*
Probab=100.00 E-value=2.3e-42 Score=366.46 Aligned_cols=271 Identities=27% Similarity=0.403 Sum_probs=218.4
Q ss_pred CCCHHHHHHHhccCCccccccccccEEEEEEEe------cCCCeEEEEEechhh-HHHHHHHHHHHHHHHhc-CCCceee
Q 005040 416 RTSYLDIRRATDEFNECNLLGTGGFGSVYKGTL------SDGTNVAIKIFNLQL-ERAFRSFDSECEILRNV-RHRNLLK 487 (717)
Q Consensus 416 ~~~~~~~~~~~~~~~~~~~lg~G~~g~V~~~~~------~~~~~vavK~~~~~~-~~~~~~~~~e~~~l~~l-~hpniv~ 487 (717)
...........++|++.+.||+|+||.||+|++ .+++.||||++.... ....+.+.+|+++++++ +||||++
T Consensus 11 ~~~~~~~~~~~~~y~~~~~lG~G~~g~Vy~~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~~hpniv~ 90 (359)
T 3vhe_A 11 PYDASKWEFPRDRLKLGKPLGRGAFGQVIEADAFGIDKTATCRTVAVKMLKEGATHSEHRALMSELKILIHIGHHLNVVN 90 (359)
T ss_dssp CCCHHHHBCCGGGEEEEEEEEECSSEEEEEEEEESSSSTTCEEEEEEEEECTTCCHHHHHHHHHHHHHHHHHCCCTTBCC
T ss_pred CCCcccccccccceeeceeecCCCCceEEEEEeccccccccceEEEEEEecCcCCHHHHHHHHHHHHHHHhhcCCcceee
Confidence 334445556678999999999999999999973 256789999997643 34456789999999999 7999999
Q ss_pred EeeeeecCC-eeEEEEEccCCCCHHHHHhhCCC-----------------------------------------------
Q 005040 488 ILGSCSNLD-FKALVLEFMPNGSLEKWLYSHNY----------------------------------------------- 519 (717)
Q Consensus 488 ~~~~~~~~~-~~~lv~e~~~~g~L~~~l~~~~~----------------------------------------------- 519 (717)
+++++.+.+ ..++||||+++|+|.+++.....
T Consensus 91 ~~~~~~~~~~~~~iv~e~~~~g~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 170 (359)
T 3vhe_A 91 LLGACTKPGGPLMVIVEFCKFGNLSTYLRSKRNEFVPYKTKGARFRQGKDYVGAIPVDLKRRLDSITSSQSSASSGFVEE 170 (359)
T ss_dssp EEEEECSTTSCCEEEEECCTTEEHHHHHHTTTTSBCSCC-----------------------------------------
T ss_pred eeeeeecCCCceEEEEEecCCCcHHHHHHhccccccccccccchhhcccccccccchhhhccccccCccccccccccccc
Confidence 999987754 48999999999999999986432
Q ss_pred ------------------CCCHHHHHHHHHHHHHHHHHHhhcCCCCCeEecCCCCCCeeeCCCCcEEEeeeccccccCCC
Q 005040 520 ------------------FLDILQRLNIMIDVGSALEYLHHCHSSAPIIHCDLKPTNILLDENMVAHVSDFGISKLLGEG 581 (717)
Q Consensus 520 ------------------~~~~~~~~~i~~~i~~~l~~LH~~~~~~~ivH~dlk~~Nill~~~~~~kl~Dfgl~~~~~~~ 581 (717)
.+++..+..++.|++.||+||| +.+|+||||||+||+++.++.+||+|||++......
T Consensus 171 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ql~~aL~~LH----~~~ivH~Dikp~NIll~~~~~~kl~Dfg~a~~~~~~ 246 (359)
T 3vhe_A 171 KSLSDVEEEEAPEDLYKDFLTLEHLICYSFQVAKGMEFLA----SRKCIHRDLAARNILLSEKNVVKICDFGLARDIYKD 246 (359)
T ss_dssp -------------CTTTTCBCHHHHHHHHHHHHHHHHHHH----HTTCCCSCCSGGGEEECGGGCEEECCCGGGSCTTSC
T ss_pred cccchhhhcccccchhccccCHHHHHHHHHHHHHHHHHHH----HCCcccCCCChhhEEEcCCCcEEEEeccceeeeccc
Confidence 2889999999999999999999 678999999999999999999999999999877554
Q ss_pred CCceeeeccccCccccCCCccCCCCcCcccchhhHHHHHHHHHh-CCCCCCccccCcchHHHHHHhhCCCchhhhccccc
Q 005040 582 EDSVIQTMTMATIGYMAPEYGSEGIVSTKCDVYSYGVLLMETFT-EKKPTDEMFTGEMSLRRWVKESLPHRLTEVVDANL 660 (717)
Q Consensus 582 ~~~~~~~~~~~t~~y~aPE~~~~~~~~~~~Dvws~G~il~el~t-g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 660 (717)
..........+|+.|+|||++.+..++.++||||||+++|||++ |+.||......+ .....+.......
T Consensus 247 ~~~~~~~~~~~t~~y~aPE~~~~~~~~~~~Di~slG~il~ellt~g~~p~~~~~~~~-~~~~~~~~~~~~~--------- 316 (359)
T 3vhe_A 247 PDYVRKGDARLPLKWMAPETIFDRVYTIQSDVWSFGVLLWEIFSLGASPYPGVKIDE-EFCRRLKEGTRMR--------- 316 (359)
T ss_dssp TTCEEC--CEECGGGCCHHHHHHCCCCHHHHHHHHHHHHHHHTTTSCCSSTTCCCSH-HHHHHHHHTCCCC---------
T ss_pred ccchhccccCCCceeEChhhhcCCCCCchhhhhhHHHHHHHHHhcCCCCCCccchhH-HHHHHHHcCCCCC---------
Confidence 44444455678999999999988999999999999999999998 999997643222 1111111111100
Q ss_pred hhhhhhhhhhHHHHHHHHHHHhhccCCCCCCCCCHHHHHHHHHHhHHh
Q 005040 661 VREEQAFSDKMDCLFSIMDLALDCCMDTPHKRIHMTDAAAKLRKIKAK 708 (717)
Q Consensus 661 ~~~~~~~~~~~~~~~~l~~li~~cl~~~P~~Rpt~~ev~~~L~~~~~~ 708 (717)
.+..++.++.+++.+||+.||++|||+.|+++.|+++.+.
T Consensus 317 --------~~~~~~~~l~~li~~~l~~dP~~Rps~~ell~~L~~~~~~ 356 (359)
T 3vhe_A 317 --------APDYTTPEMYQTMLDCWHGEPSQRPTFSELVEHLGNLLQA 356 (359)
T ss_dssp --------CCTTCCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHHHH
T ss_pred --------CCCCCCHHHHHHHHHHccCChhhCCCHHHHHHHHHHHHHH
Confidence 0112345688999999999999999999999999998764
No 37
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=100.00 E-value=2.3e-41 Score=373.02 Aligned_cols=338 Identities=22% Similarity=0.228 Sum_probs=307.0
Q ss_pred CCCCCccccCCCCCcEEECCCCcceecCCcCCCCCCCCCEEEcccccccCccCCcccccccccccCccCCcEEeccCCCC
Q 005040 1 MGTIPNSITNATKLIGLDLGLNSFSGHIPNTFGNLRHLSVLSLMMNNLTTESSSADQWSFLSSLTNCRNLANLALASNPL 80 (717)
Q Consensus 1 ~~~iP~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~l~~l~~L~~L~L~~N~l 80 (717)
+.+||..+. +++++|+|++|+|+++.+..|.++++|++|+|++|.|+.+.+.. |.++++|++|+|++|++
T Consensus 23 l~~ip~~~~--~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~--------~~~l~~L~~L~L~~n~l 92 (477)
T 2id5_A 23 FVAVPEGIP--TETRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVSAVEPGA--------FNNLFNLRTLGLRSNRL 92 (477)
T ss_dssp CSSCCSCCC--TTCSEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTT--------TTTCTTCCEEECCSSCC
T ss_pred cCcCCCCCC--CCCcEEECCCCccceECHhHccCCCCCCEEECCCCccCEeChhh--------hhCCccCCEEECCCCcC
Confidence 467898875 58899999999999999999999999999999999999987554 89999999999999999
Q ss_pred cccCCcchhccccccceeeecCCcceecCCccccCCCCCcEEEccCCCCcccCCccccccCCCCEEeccCCcccccCCcc
Q 005040 81 GGILPPLIGNFSASLQNIYAFECKLGGSIPKEIGNLRGLIVLSLGFNDLNGTIPTSIGTLQQLQGFYVPENNLQGYVPHD 160 (717)
Q Consensus 81 ~~~~~~~~~~l~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~ 160 (717)
+...+..|..+ ++|++|+|++|++.+..+..|.++++|++|+|++|.++...+..|.++++|++|+|++|.+++..+..
T Consensus 93 ~~~~~~~~~~l-~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~ 171 (477)
T 2id5_A 93 KLIPLGVFTGL-SNLTKLDISENKIVILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCNLTSIPTEA 171 (477)
T ss_dssp CSCCTTSSTTC-TTCCEEECTTSCCCEECTTTTTTCTTCCEEEECCTTCCEECTTSSTTCTTCCEEEEESCCCSSCCHHH
T ss_pred CccCcccccCC-CCCCEEECCCCccccCChhHccccccCCEEECCCCccceeChhhccCCCCCCEEECCCCcCcccChhH
Confidence 97777778877 68999999999999999999999999999999999999988999999999999999999999888888
Q ss_pred ccCCCCCCEEeccCCcCcccCCccccCCCCCCeEEecCccccCCCChhhhcccCCCeEEccCCcCcccCCccccCCCCCC
Q 005040 161 LCHLERLNILNLSGNKLSGAIPQCLASLTSLRSLYLQSNKLSSSLPSSLWSLEYILRINLSSNSLKGTLPSNIQKLNVLI 240 (717)
Q Consensus 161 ~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~ 240 (717)
|.++++|+.|+|++|.+.+..+..|..+++|+.|++++|.+.+.++.......+|++|+|++|.+++..+..|..+++|+
T Consensus 172 l~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~ 251 (477)
T 2id5_A 172 LSHLHGLIVLRLRHLNINAIRDYSFKRLYRLKVLEISHWPYLDTMTPNCLYGLNLTSLSITHCNLTAVPYLAVRHLVYLR 251 (477)
T ss_dssp HTTCTTCCEEEEESCCCCEECTTCSCSCTTCCEEEEECCTTCCEECTTTTTTCCCSEEEEESSCCCSCCHHHHTTCTTCC
T ss_pred hcccCCCcEEeCCCCcCcEeChhhcccCcccceeeCCCCccccccCcccccCccccEEECcCCcccccCHHHhcCccccC
Confidence 99999999999999999988888999999999999999998877777777778999999999999966557899999999
Q ss_pred eEEccCCCCCCCCcccccCCcccccccccCccccCCCCccccccCccceEeccCCCCCCCCcccccccccccEEEccCCc
Q 005040 241 DLDLSRNQLSSDIPSTIGTLKNLETLSLAGNQFQGPIPESVGNLISLESLDFSNNNLSGKIPKSLEALSHLKQFNVSHNR 320 (717)
Q Consensus 241 ~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~~~~~~~~~~l~~L~~L~l~~N~ 320 (717)
.|+|++|.+++..+..|..+++|++|+|++|++.+..|..|.++++|+.|+|++|++++..+..|..+++|+.|+|++|+
T Consensus 252 ~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~ 331 (477)
T 2id5_A 252 FLNLSYNPISTIEGSMLHELLRLQEIQLVGGQLAVVEPYAFRGLNYLRVLNVSGNQLTTLEESVFHSVGNLETLILDSNP 331 (477)
T ss_dssp EEECCSSCCCEECTTSCTTCTTCCEEECCSSCCSEECTTTBTTCTTCCEEECCSSCCSCCCGGGBSCGGGCCEEECCSSC
T ss_pred eeECCCCcCCccChhhccccccCCEEECCCCccceECHHHhcCcccCCEEECCCCcCceeCHhHcCCCcccCEEEccCCC
Confidence 99999999999888889999999999999999999999999999999999999999998888889999999999999999
Q ss_pred ccccccccccccccccccccCCccccCCC
Q 005040 321 LEGEIPVKGSFKDFSAQSYFGNYALCGPP 349 (717)
Q Consensus 321 l~~~~p~~~~~~~~~~~~~~~n~~~c~~~ 349 (717)
+.+.++..+.+.......+.++...|+.|
T Consensus 332 l~c~c~~~~~~~~~~~~~~~~~~~~C~~p 360 (477)
T 2id5_A 332 LACDCRLLWVFRRRWRLNFNRQQPTCATP 360 (477)
T ss_dssp EECSGGGHHHHTTTTSSCCTTCCCBEEES
T ss_pred ccCccchHhHHhhhhccccCccCceeCCc
Confidence 99988765544444445566677777643
No 38
>3sxs_A Cytoplasmic tyrosine-protein kinase BMX; transferase-transferase inhibitor complex; HET: PP2; 1.89A {Homo sapiens} SCOP: d.144.1.7 PDB: 3sxr_A*
Probab=100.00 E-value=1.6e-42 Score=351.83 Aligned_cols=259 Identities=27% Similarity=0.374 Sum_probs=213.5
Q ss_pred hccCCccccccccccEEEEEEEecCCCeEEEEEechhhHHHHHHHHHHHHHHHhcCCCceeeEeeeeecCCeeEEEEEcc
Q 005040 426 TDEFNECNLLGTGGFGSVYKGTLSDGTNVAIKIFNLQLERAFRSFDSECEILRNVRHRNLLKILGSCSNLDFKALVLEFM 505 (717)
Q Consensus 426 ~~~~~~~~~lg~G~~g~V~~~~~~~~~~vavK~~~~~~~~~~~~~~~e~~~l~~l~hpniv~~~~~~~~~~~~~lv~e~~ 505 (717)
.++|++.+.||+|+||.||+|..+++..||+|++..... ..+.+.+|++++++++||||+++++++.+....++||||+
T Consensus 7 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~vavK~~~~~~~-~~~~~~~E~~~l~~l~h~~i~~~~~~~~~~~~~~lv~e~~ 85 (268)
T 3sxs_A 7 REEITLLKELGSGQFGVVKLGKWKGQYDVAVKMIKEGSM-SEDEFFQEAQTMMKLSHPKLVKFYGVCSKEYPIYIVTEYI 85 (268)
T ss_dssp GGGEEEEEEEEEETTEEEEEEEETTTEEEEEEEECBTTB-CHHHHHHHHHHHHHCCCTTBCCEEEEECSSSSEEEEEECC
T ss_pred hhheeeeeeeccCCCceEEEEEecCceeEEEEEeccCCC-cHHHHHHHHHHHHhCCCCCEeeEEEEEccCCceEEEEEcc
Confidence 468999999999999999999998888999999975532 2356889999999999999999999999999999999999
Q ss_pred CCCCHHHHHhhCCCCCCHHHHHHHHHHHHHHHHHHhhcCCCCCeEecCCCCCCeeeCCCCcEEEeeeccccccCCCCCce
Q 005040 506 PNGSLEKWLYSHNYFLDILQRLNIMIDVGSALEYLHHCHSSAPIIHCDLKPTNILLDENMVAHVSDFGISKLLGEGEDSV 585 (717)
Q Consensus 506 ~~g~L~~~l~~~~~~~~~~~~~~i~~~i~~~l~~LH~~~~~~~ivH~dlk~~Nill~~~~~~kl~Dfgl~~~~~~~~~~~ 585 (717)
++++|.+++......+++..++.++.|++.||+||| +.+|+||||||+||+++.++.+||+|||++........ .
T Consensus 86 ~~~~L~~~l~~~~~~~~~~~~~~i~~qi~~~l~~lH----~~~i~H~dikp~Nil~~~~~~~~l~Dfg~~~~~~~~~~-~ 160 (268)
T 3sxs_A 86 SNGCLLNYLRSHGKGLEPSQLLEMCYDVCEGMAFLE----SHQFIHRDLAARNCLVDRDLCVKVSDFGMTRYVLDDQY-V 160 (268)
T ss_dssp TTCBHHHHHHHHGGGCCHHHHHHHHHHHHHHHHHHH----HTTEEESSCSGGGEEECTTCCEEECCTTCEEECCTTCE-E
T ss_pred CCCcHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHH----HCCeecCCcCcceEEECCCCCEEEccCccceecchhhh-h
Confidence 999999999877666999999999999999999999 67899999999999999999999999999987654332 2
Q ss_pred eeeccccCccccCCCccCCCCcCcccchhhHHHHHHHHHh-CCCCCCccccCcchHHHHHHhhCCCchhhhccccchhhh
Q 005040 586 IQTMTMATIGYMAPEYGSEGIVSTKCDVYSYGVLLMETFT-EKKPTDEMFTGEMSLRRWVKESLPHRLTEVVDANLVREE 664 (717)
Q Consensus 586 ~~~~~~~t~~y~aPE~~~~~~~~~~~Dvws~G~il~el~t-g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 664 (717)
......+|+.|+|||...+..++.++||||+|+++|||++ |+.||....... ....+......
T Consensus 161 ~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~~g~~p~~~~~~~~--~~~~~~~~~~~-------------- 224 (268)
T 3sxs_A 161 SSVGTKFPVKWSAPEVFHYFKYSSKSDVWAFGILMWEVFSLGKMPYDLYTNSE--VVLKVSQGHRL-------------- 224 (268)
T ss_dssp ECCSCCCCGGGCCHHHHHHSEEETTHHHHHHHHHHHHHHTTTCCTTTTSCHHH--HHHHHHTTCCC--------------
T ss_pred cccCCCcCcccCCHHHHhccCCchhhhhHHHHHHHHHHHcCCCCCccccChHH--HHHHHHcCCCC--------------
Confidence 2334456788999999988889999999999999999999 999997532211 11111110000
Q ss_pred hhhhhhHHHHHHHHHHHhhccCCCCCCCCCHHHHHHHHHHhHHhh
Q 005040 665 QAFSDKMDCLFSIMDLALDCCMDTPHKRIHMTDAAAKLRKIKAKF 709 (717)
Q Consensus 665 ~~~~~~~~~~~~l~~li~~cl~~~P~~Rpt~~ev~~~L~~~~~~~ 709 (717)
..+..++..+.+++.+||+.||++|||+.|+++.|++++++.
T Consensus 225 ---~~~~~~~~~l~~li~~~l~~~p~~Rps~~~ll~~L~~l~~~~ 266 (268)
T 3sxs_A 225 ---YRPHLASDTIYQIMYSCWHELPEKRPTFQQLLSSIEPLREKD 266 (268)
T ss_dssp ---CCCTTSCHHHHHHHHHTTCSSGGGSCCHHHHHHHHGGGCC--
T ss_pred ---CCCCcChHHHHHHHHHHcCCChhhCcCHHHHHHHHHHhhhcc
Confidence 001123456889999999999999999999999999987653
No 39
>4hcu_A Tyrosine-protein kinase ITK/TSK; transferase-transferase inhibitor complex; HET: 13L; 1.43A {Homo sapiens} PDB: 4hct_A* 4hcv_A* 3t9t_A* 1sm2_A* 1snu_A* 1snx_A 3v5l_A* 3v5j_A* 3v8t_A* 3v8w_A* 3qgw_A* 3qgy_A* 3miy_A* 3mj1_A* 3mj2_A*
Probab=100.00 E-value=3.4e-42 Score=349.48 Aligned_cols=258 Identities=26% Similarity=0.391 Sum_probs=213.4
Q ss_pred hccCCccccccccccEEEEEEEecCCCeEEEEEechhhHHHHHHHHHHHHHHHhcCCCceeeEeeeeecCCeeEEEEEcc
Q 005040 426 TDEFNECNLLGTGGFGSVYKGTLSDGTNVAIKIFNLQLERAFRSFDSECEILRNVRHRNLLKILGSCSNLDFKALVLEFM 505 (717)
Q Consensus 426 ~~~~~~~~~lg~G~~g~V~~~~~~~~~~vavK~~~~~~~~~~~~~~~e~~~l~~l~hpniv~~~~~~~~~~~~~lv~e~~ 505 (717)
.++|+..+.||+|+||.||+|.+.+++.||+|++..... ..+.+.+|++++++++||||+++++++.+....++||||+
T Consensus 9 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~vavK~~~~~~~-~~~~~~~E~~~l~~l~h~~i~~~~~~~~~~~~~~lv~e~~ 87 (269)
T 4hcu_A 9 PSELTFVQEIGSGQFGLVHLGYWLNKDKVAIKTIREGAM-SEEDFIEEAEVMMKLSHPKLVQLYGVCLEQAPICLVFEFM 87 (269)
T ss_dssp GGGEEEEEEEEECSSCEEEEEEETTTEEEEEEEECTTSB-CHHHHHHHHHHHHTCCCTTBCCEEEEECSSSSEEEEEECC
T ss_pred hhhceeeheecCCCccEEEEEEecCCCeEEEEEeccccc-CHHHHHHHHHHHHhCCCCCEeeEEEEEecCCceEEEEEeC
Confidence 368899999999999999999998889999999975532 2356889999999999999999999999999999999999
Q ss_pred CCCCHHHHHhhCCCCCCHHHHHHHHHHHHHHHHHHhhcCCCCCeEecCCCCCCeeeCCCCcEEEeeeccccccCCCCCce
Q 005040 506 PNGSLEKWLYSHNYFLDILQRLNIMIDVGSALEYLHHCHSSAPIIHCDLKPTNILLDENMVAHVSDFGISKLLGEGEDSV 585 (717)
Q Consensus 506 ~~g~L~~~l~~~~~~~~~~~~~~i~~~i~~~l~~LH~~~~~~~ivH~dlk~~Nill~~~~~~kl~Dfgl~~~~~~~~~~~ 585 (717)
++++|.+++......+++..+..++.|+++||+||| +.+|+||||||+||+++.++.+||+|||++....... ..
T Consensus 88 ~~~~L~~~l~~~~~~~~~~~~~~i~~~i~~~l~~lH----~~~i~H~dikp~Nil~~~~~~~kl~Dfg~~~~~~~~~-~~ 162 (269)
T 4hcu_A 88 EHGCLSDYLRTQRGLFAAETLLGMCLDVCEGMAYLE----EACVIHRDLAARNCLVGENQVIKVSDFGMTRFVLDDQ-YT 162 (269)
T ss_dssp TTCBHHHHHHTTTTCCCHHHHHHHHHHHHHHHHHHH----HTTCCCSCCCGGGEEECGGGCEEECCTTGGGGBCCHH-HH
T ss_pred CCCcHHHHHHhcCcccCHHHHHHHHHHHHHHHHHHH----hCCeecCCcchheEEEcCCCCEEeccccccccccccc-cc
Confidence 999999999887777999999999999999999999 6789999999999999999999999999998764322 11
Q ss_pred eeeccccCccccCCCccCCCCcCcccchhhHHHHHHHHHh-CCCCCCccccCcchHHHHHHhhCCCchhhhccccchhhh
Q 005040 586 IQTMTMATIGYMAPEYGSEGIVSTKCDVYSYGVLLMETFT-EKKPTDEMFTGEMSLRRWVKESLPHRLTEVVDANLVREE 664 (717)
Q Consensus 586 ~~~~~~~t~~y~aPE~~~~~~~~~~~Dvws~G~il~el~t-g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 664 (717)
......+|+.|+|||.+.+..++.++||||+|+++|||++ |+.||...... .....+......
T Consensus 163 ~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~~l~~ll~~g~~p~~~~~~~--~~~~~~~~~~~~-------------- 226 (269)
T 4hcu_A 163 SSTGTKFPVKWASPEVFSFSRYSSKSDVWSFGVLMWEVFSEGKIPYENRSNS--EVVEDISTGFRL-------------- 226 (269)
T ss_dssp STTSTTCCGGGCCHHHHHHCCCCHHHHHHHHHHHHHHHHTTSCCTTTTCCHH--HHHHHHHTTCCC--------------
T ss_pred cccCcccccccCCHHHhcCCCCCchhhhHHHHHHHHHHhcCCCCCCCCCCHH--HHHHHHhcCccC--------------
Confidence 2233456788999999988899999999999999999999 99999753221 111111111000
Q ss_pred hhhhhhHHHHHHHHHHHhhccCCCCCCCCCHHHHHHHHHHhHHh
Q 005040 665 QAFSDKMDCLFSIMDLALDCCMDTPHKRIHMTDAAAKLRKIKAK 708 (717)
Q Consensus 665 ~~~~~~~~~~~~l~~li~~cl~~~P~~Rpt~~ev~~~L~~~~~~ 708 (717)
..+..++.++.+++.+||+.||++|||++|+++.|+++.+.
T Consensus 227 ---~~~~~~~~~~~~li~~~l~~~p~~Rps~~~ll~~l~~l~~~ 267 (269)
T 4hcu_A 227 ---YKPRLASTHVYQIMNHCWRERPEDRPAFSRLLRQLAEIAES 267 (269)
T ss_dssp ---CCCTTSCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHHHC
T ss_pred ---CCCCcCCHHHHHHHHHHccCCcccCcCHHHHHHHHHHHHHc
Confidence 00112345688999999999999999999999999998753
No 40
>3niz_A Rhodanese family protein; structural genomics, structural genomics consortium, SGC, phosphotransferase, cyclin dependent kinase; HET: ADP; 2.40A {Cryptosporidium parvum} SCOP: d.144.1.7 PDB: 2qkr_A*
Probab=100.00 E-value=1.1e-41 Score=353.02 Aligned_cols=267 Identities=25% Similarity=0.301 Sum_probs=207.1
Q ss_pred hccCCccccccccccEEEEEEEecCCCeEEEEEechhh--HHHHHHHHHHHHHHHhcCCCceeeEeeeeecCCeeEEEEE
Q 005040 426 TDEFNECNLLGTGGFGSVYKGTLSDGTNVAIKIFNLQL--ERAFRSFDSECEILRNVRHRNLLKILGSCSNLDFKALVLE 503 (717)
Q Consensus 426 ~~~~~~~~~lg~G~~g~V~~~~~~~~~~vavK~~~~~~--~~~~~~~~~e~~~l~~l~hpniv~~~~~~~~~~~~~lv~e 503 (717)
.++|++.+.||+|+||+||+|...+++.||+|++.... ......+.+|++++++++||||+++++++.+....++|||
T Consensus 20 ~~~y~~~~~lG~G~~g~V~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~hp~iv~~~~~~~~~~~~~lv~e 99 (311)
T 3niz_A 20 MEKYQKLEKVGEGTYGVVYKAKDSQGRIVALKRIRLDAEDEGIPSTAIREISLLKELHHPNIVSLIDVIHSERCLTLVFE 99 (311)
T ss_dssp SCEEEEEEEEEECSSCEEEEEEETTSCEEEEEEEC------CHHHHHHHHHHHHHHCCCTTBCCEEEEECCSSCEEEEEE
T ss_pred HhhhHhhhhccCCCCeEEEEEEECCCCEEEEEEEecccccchhhHHHHHHHHHHHHcCCCCEeeeeeEEccCCEEEEEEc
Confidence 47899999999999999999999889999999987543 2234678899999999999999999999999999999999
Q ss_pred ccCCCCHHHHHhhCCCCCCHHHHHHHHHHHHHHHHHHhhcCCCCCeEecCCCCCCeeeCCCCcEEEeeeccccccCCCCC
Q 005040 504 FMPNGSLEKWLYSHNYFLDILQRLNIMIDVGSALEYLHHCHSSAPIIHCDLKPTNILLDENMVAHVSDFGISKLLGEGED 583 (717)
Q Consensus 504 ~~~~g~L~~~l~~~~~~~~~~~~~~i~~~i~~~l~~LH~~~~~~~ivH~dlk~~Nill~~~~~~kl~Dfgl~~~~~~~~~ 583 (717)
|++ |+|.+++......+++..+..++.|++.||.||| +.+|+||||||+||+++.++.+||+|||+++.......
T Consensus 100 ~~~-~~l~~~~~~~~~~~~~~~~~~~~~qi~~~l~~LH----~~~ivH~Dikp~NIl~~~~~~~kl~Dfg~a~~~~~~~~ 174 (311)
T 3niz_A 100 FME-KDLKKVLDENKTGLQDSQIKIYLYQLLRGVAHCH----QHRILHRDLKPQNLLINSDGALKLADFGLARAFGIPVR 174 (311)
T ss_dssp CCS-EEHHHHHHTCTTCCCHHHHHHHHHHHHHHHHHHH----HTTEECCCCCGGGEEECTTCCEEECCCTTCEETTSCCC
T ss_pred CCC-CCHHHHHHhccCCCCHHHHHHHHHHHHHHHHHHH----HCCcccCCCchHhEEECCCCCEEEccCcCceecCCCcc
Confidence 997 5899999887777999999999999999999999 67899999999999999999999999999987653322
Q ss_pred ceeeeccccCccccCCCccCC-CCcCcccchhhHHHHHHHHHhCCCCCCccccCcchHHHHHHhhC---CCchhhhcccc
Q 005040 584 SVIQTMTMATIGYMAPEYGSE-GIVSTKCDVYSYGVLLMETFTEKKPTDEMFTGEMSLRRWVKESL---PHRLTEVVDAN 659 (717)
Q Consensus 584 ~~~~~~~~~t~~y~aPE~~~~-~~~~~~~Dvws~G~il~el~tg~~p~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~ 659 (717)
......+|+.|+|||++.+ ..++.++||||+||++|||++|+.||......+ .......... +..+....+..
T Consensus 175 --~~~~~~~t~~y~aPE~~~~~~~~~~~~DiwslG~il~~ll~g~~pf~~~~~~~-~~~~i~~~~~~~~~~~~~~~~~~~ 251 (311)
T 3niz_A 175 --SYTHEVVTLWYRAPDVLMGSKKYSTSVDIWSIGCIFAEMITGKPLFPGVTDDD-QLPKIFSILGTPNPREWPQVQELP 251 (311)
T ss_dssp -----CCCCCCTTCCHHHHTTCCSCCTHHHHHHHHHHHHHHHHSSCSCCCSSTTT-HHHHHHHHHCCCCTTTSGGGTTSH
T ss_pred --cccCCcccCCcCCHHHhcCCCCCCchHHhHHHHHHHHHHHhCCCCCCCCChHH-HHHHHHHHHCCCChHHhhhhhccc
Confidence 2234568999999998766 568999999999999999999999997643332 2222222111 11111111000
Q ss_pred c------h--hhhhhhhhhHHHHHHHHHHHhhccCCCCCCCCCHHHHHH
Q 005040 660 L------V--REEQAFSDKMDCLFSIMDLALDCCMDTPHKRIHMTDAAA 700 (717)
Q Consensus 660 ~------~--~~~~~~~~~~~~~~~l~~li~~cl~~~P~~Rpt~~ev~~ 700 (717)
. . ...........++.++.+++.+||+.||++|||++|+++
T Consensus 252 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~Rpt~~ell~ 300 (311)
T 3niz_A 252 LWKQRTFQVFEKKPWSSIIPGFCQEGIDLLSNMLCFDPNKRISARDAMN 300 (311)
T ss_dssp HHHSCCCCCCCCCCHHHHSTTCCHHHHHHHHHHSCSCTTTSCCHHHHHT
T ss_pred hhhhcccccccCCcHHHhCcccCHHHHHHHHHHcCCChhHCCCHHHHhc
Confidence 0 0 000000111234567889999999999999999999986
No 41
>2qol_A Ephrin receptor; receptor tyrosine kinase, juxtamembrane segment, structural genomics, mutant, structural genomics consortium, SGC, ATP- binding; 1.07A {Homo sapiens} PDB: 2qok_A 2qoi_A 2qoo_A 2qof_A 2qod_A 2qo9_A* 2gsf_A 2qo7_A* 2qo2_A* 2qoq_A* 2qon_A* 3fxx_A* 3fy2_A 2qoc_A* 2qob_A* 3dzq_A* 2r2p_A 2hel_A 2rei_A 3dko_A* ...
Probab=100.00 E-value=2.1e-42 Score=367.18 Aligned_cols=261 Identities=27% Similarity=0.478 Sum_probs=203.0
Q ss_pred hccCCccccccccccEEEEEEEec----CCCeEEEEEechhh-HHHHHHHHHHHHHHHhcCCCceeeEeeeeecCCeeEE
Q 005040 426 TDEFNECNLLGTGGFGSVYKGTLS----DGTNVAIKIFNLQL-ERAFRSFDSECEILRNVRHRNLLKILGSCSNLDFKAL 500 (717)
Q Consensus 426 ~~~~~~~~~lg~G~~g~V~~~~~~----~~~~vavK~~~~~~-~~~~~~~~~e~~~l~~l~hpniv~~~~~~~~~~~~~l 500 (717)
..+|++.+.||+|+||.||+|+.. ++..||||+++... ....+.+.+|++++++++||||+++++++.+.+..++
T Consensus 44 ~~~~~~~~~lG~G~fg~Vy~~~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~~~~~~~~~~~~~l 123 (373)
T 2qol_A 44 ATNISIDKVVGAGEFGEVCSGRLKLPSKKEISVAIKTLKVGYTEKQRRDFLGEASIMGQFDHPNIIRLEGVVTKSKPVMI 123 (373)
T ss_dssp GGGCCCCEEEEECSSSEEEEC-CBCTTSCBCCEEEEECCTTCCHHHHHHHHHHHHHHTTCCCTTBCCEEEEECSSSSCEE
T ss_pred HhhceeeeEEeeCCCeEEEEEEEecCCCCceeEEEEEecCccCHHHHHHHHHHHHHHHhCCCCCCCeEEEEEeeCCceEE
Confidence 368999999999999999999864 57789999997553 3445679999999999999999999999999999999
Q ss_pred EEEccCCCCHHHHHhhCCCCCCHHHHHHHHHHHHHHHHHHhhcCCCCCeEecCCCCCCeeeCCCCcEEEeeeccccccCC
Q 005040 501 VLEFMPNGSLEKWLYSHNYFLDILQRLNIMIDVGSALEYLHHCHSSAPIIHCDLKPTNILLDENMVAHVSDFGISKLLGE 580 (717)
Q Consensus 501 v~e~~~~g~L~~~l~~~~~~~~~~~~~~i~~~i~~~l~~LH~~~~~~~ivH~dlk~~Nill~~~~~~kl~Dfgl~~~~~~ 580 (717)
||||+++|+|.++++.....+++..+..++.|+++||+||| +.+|+||||||+||+++.++.+||+|||+++....
T Consensus 124 v~e~~~~~sL~~~l~~~~~~~~~~~~~~i~~qi~~aL~~LH----~~~ivH~Dlkp~NIll~~~~~~kl~Dfg~a~~~~~ 199 (373)
T 2qol_A 124 VTEYMENGSLDSFLRKHDAQFTVIQLVGMLRGIASGMKYLS----DMGYVHRDLAARNILINSNLVCKVSDFGLGRVLED 199 (373)
T ss_dssp EEECCTTCBHHHHHHTTTTCSCHHHHHHHHHHHHHHHHHHH----HTTCCCSCCCGGGEEECTTCCEEECCC--------
T ss_pred EEeCCCCCcHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHH----HCCeeCCCCCcceEEEcCCCCEEECcCcccccccc
Confidence 99999999999999987777999999999999999999999 57899999999999999999999999999987654
Q ss_pred CCCce-eeeccccCccccCCCccCCCCcCcccchhhHHHHHHHHHh-CCCCCCccccCcchHHHHHHhhCCCchhhhccc
Q 005040 581 GEDSV-IQTMTMATIGYMAPEYGSEGIVSTKCDVYSYGVLLMETFT-EKKPTDEMFTGEMSLRRWVKESLPHRLTEVVDA 658 (717)
Q Consensus 581 ~~~~~-~~~~~~~t~~y~aPE~~~~~~~~~~~Dvws~G~il~el~t-g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 658 (717)
..... ......+|+.|+|||++.+..++.++||||||+++|||++ |+.||...... .....+...
T Consensus 200 ~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Dv~SlG~il~ellt~g~~P~~~~~~~--~~~~~i~~~----------- 266 (373)
T 2qol_A 200 DPEAAYTTRGGKIPIRWTSPEAIAYRKFTSASDVWSYGIVLWEVMSYGERPYWEMSNQ--DVIKAVDEG----------- 266 (373)
T ss_dssp --------------CTTSCHHHHHHCCCCHHHHHHHHHHHHHHHHTTC-CTTTTCCHH--HHHHHHHTT-----------
T ss_pred CCccceeccCCCcCCCccChhhhccCCcCchhcHHHHHHHHHHHHhCCCCCCCCCCHH--HHHHHHHcC-----------
Confidence 32211 1122245778999999998999999999999999999998 99999753221 111111110
Q ss_pred cchhhhhhhhhhHHHHHHHHHHHhhccCCCCCCCCCHHHHHHHHHHhHHhh
Q 005040 659 NLVREEQAFSDKMDCLFSIMDLALDCCMDTPHKRIHMTDAAAKLRKIKAKF 709 (717)
Q Consensus 659 ~~~~~~~~~~~~~~~~~~l~~li~~cl~~~P~~Rpt~~ev~~~L~~~~~~~ 709 (717)
. ..+....++.++.+++.+||+.||++||++.|+++.|+++.+..
T Consensus 267 -~-----~~~~~~~~~~~l~~li~~cl~~dp~~RPs~~~i~~~L~~~~~~~ 311 (373)
T 2qol_A 267 -Y-----RLPPPMDCPAALYQLMLDCWQKDRNNRPKFEQIVSILDKLIRNP 311 (373)
T ss_dssp -E-----ECCCCTTCBHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHHHCG
T ss_pred -C-----CCCCCccccHHHHHHHHHHhCcChhhCcCHHHHHHHHHHHHhCc
Confidence 0 00112244567889999999999999999999999999987643
No 42
>3tki_A Serine/threonine-protein kinase CHK1; cell checkpoint, transferase-transferase inhib complex; HET: S25; 1.60A {Homo sapiens} PDB: 2qhm_A* 2r0u_A* 3tkh_A* 2qhn_A* 2hy0_A* 2hog_A* 2hxq_A* 2hxl_A* 3f9n_A*
Probab=100.00 E-value=3.1e-42 Score=358.87 Aligned_cols=253 Identities=22% Similarity=0.324 Sum_probs=206.4
Q ss_pred hccCCccccccccccEEEEEEEec-CCCeEEEEEechhh-HHHHHHHHHHHHHHHhcCCCceeeEeeeeecCCeeEEEEE
Q 005040 426 TDEFNECNLLGTGGFGSVYKGTLS-DGTNVAIKIFNLQL-ERAFRSFDSECEILRNVRHRNLLKILGSCSNLDFKALVLE 503 (717)
Q Consensus 426 ~~~~~~~~~lg~G~~g~V~~~~~~-~~~~vavK~~~~~~-~~~~~~~~~e~~~l~~l~hpniv~~~~~~~~~~~~~lv~e 503 (717)
.++|++.+.||+|+||.||+|... +++.||||++.... ....+.+.+|+.+++.++||||+++++++.+.+..++|||
T Consensus 6 ~~~y~i~~~lG~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~hpnIv~~~~~~~~~~~~~lv~e 85 (323)
T 3tki_A 6 VEDWDLVQTLGEGAYGEVQLAVNRVTEEAVAVKIVDMKRAVDCPENIKKEICINKMLNHENVVKFYGHRREGNIQYLFLE 85 (323)
T ss_dssp TTCEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEECC-------CHHHHHHHHHHCCCTTBCCEEEEEECSSEEEEEEE
T ss_pred hhhceeeeEEecCCCEEEEEEEECCCCcEEEEEEEEcccccchHHHHHHHHHHHHhCCCCCCCeEEEEEecCCeEEEEEE
Confidence 368999999999999999999976 79999999986443 2233568889999999999999999999999999999999
Q ss_pred ccCCCCHHHHHhhCCCCCCHHHHHHHHHHHHHHHHHHhhcCCCCCeEecCCCCCCeeeCCCCcEEEeeeccccccCCCCC
Q 005040 504 FMPNGSLEKWLYSHNYFLDILQRLNIMIDVGSALEYLHHCHSSAPIIHCDLKPTNILLDENMVAHVSDFGISKLLGEGED 583 (717)
Q Consensus 504 ~~~~g~L~~~l~~~~~~~~~~~~~~i~~~i~~~l~~LH~~~~~~~ivH~dlk~~Nill~~~~~~kl~Dfgl~~~~~~~~~ 583 (717)
|+++|+|.+++.... .+++..+..++.|++.||+||| +.+|+||||||+||+++.++.+||+|||++..+.....
T Consensus 86 ~~~~~~L~~~l~~~~-~~~~~~~~~i~~qi~~aL~~LH----~~givH~Dlkp~NIll~~~~~~kl~Dfg~a~~~~~~~~ 160 (323)
T 3tki_A 86 YCSGGELFDRIEPDI-GMPEPDAQRFFHQLMAGVVYLH----GIGITHRDIKPENLLLDERDNLKISDFGLATVFRYNNR 160 (323)
T ss_dssp CCTTEEGGGGSBTTT-BCCHHHHHHHHHHHHHHHHHHH----HTTEECSCCSGGGEEECTTCCEEECCCTTCEECEETTE
T ss_pred cCCCCcHHHHHhhcC-CCCHHHHHHHHHHHHHHHHHHH----HCCccccccchHHEEEeCCCCEEEEEeeccceeccCCc
Confidence 999999999987654 4899999999999999999999 67899999999999999999999999999987643333
Q ss_pred ceeeeccccCccccCCCccCCCCc-CcccchhhHHHHHHHHHhCCCCCCccccCcchHHHHHHhhCCCchhhhccccchh
Q 005040 584 SVIQTMTMATIGYMAPEYGSEGIV-STKCDVYSYGVLLMETFTEKKPTDEMFTGEMSLRRWVKESLPHRLTEVVDANLVR 662 (717)
Q Consensus 584 ~~~~~~~~~t~~y~aPE~~~~~~~-~~~~Dvws~G~il~el~tg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 662 (717)
........||+.|+|||++.+..+ +.++||||+||++|||++|+.||............|.......
T Consensus 161 ~~~~~~~~gt~~y~aPE~~~~~~~~~~~~DiwslG~il~~ll~g~~pf~~~~~~~~~~~~~~~~~~~~------------ 228 (323)
T 3tki_A 161 ERLLNKMCGTLPYVAPELLKRREFHAEPVDVWSCGIVLTAMLAGELPWDQPSDSCQEYSDWKEKKTYL------------ 228 (323)
T ss_dssp ECCBCSCCSCGGGSCHHHHHCSSBCHHHHHHHHHHHHHHHHHHSSCSCSSSCTTSHHHHHHHTTCTTS------------
T ss_pred ccccCCCccCcCccCcHHhccCCCCCCcccHHHHHHHHHHHHhCCCCCCCCchHHHHHHHHhcccccC------------
Confidence 333345679999999999877665 7899999999999999999999976544333333333221110
Q ss_pred hhhhhhhhHHHHHHHHHHHhhccCCCCCCCCCHHHHHH
Q 005040 663 EEQAFSDKMDCLFSIMDLALDCCMDTPHKRIHMTDAAA 700 (717)
Q Consensus 663 ~~~~~~~~~~~~~~l~~li~~cl~~~P~~Rpt~~ev~~ 700 (717)
.....++.++.+++.+||+.||++|||+.|+++
T Consensus 229 -----~~~~~~~~~~~~li~~~L~~dP~~R~t~~eil~ 261 (323)
T 3tki_A 229 -----NPWKKIDSAPLALLHKILVENPSARITIPDIKK 261 (323)
T ss_dssp -----TTGGGSCHHHHHHHHHHSCSSTTTSCCHHHHTT
T ss_pred -----CccccCCHHHHHHHHHHccCChhhCcCHHHHhh
Confidence 111234456789999999999999999999976
No 43
>3q4u_A Activin receptor type-1; structural genomics consortium, SGC, protein kinase, transfe; HET: LDN FLC; 1.82A {Homo sapiens} PDB: 3mtf_A* 3oom_A* 4dym_A* 3h9r_A* 3my0_A*
Probab=100.00 E-value=2.1e-41 Score=349.70 Aligned_cols=266 Identities=26% Similarity=0.387 Sum_probs=206.9
Q ss_pred hccCCccccccccccEEEEEEEecCCCeEEEEEechhhHHHHHHHHHHHHHHHh--cCCCceeeEeeeeec----CCeeE
Q 005040 426 TDEFNECNLLGTGGFGSVYKGTLSDGTNVAIKIFNLQLERAFRSFDSECEILRN--VRHRNLLKILGSCSN----LDFKA 499 (717)
Q Consensus 426 ~~~~~~~~~lg~G~~g~V~~~~~~~~~~vavK~~~~~~~~~~~~~~~e~~~l~~--l~hpniv~~~~~~~~----~~~~~ 499 (717)
.++|++.+.||+|+||+||+|++ +++.||||++..... ..+..|.+++.. ++||||+++++++.+ ....+
T Consensus 7 ~~~y~~~~~lg~G~~g~V~~~~~-~~~~vavK~~~~~~~---~~~~~e~~~~~~~~l~h~niv~~~~~~~~~~~~~~~~~ 82 (301)
T 3q4u_A 7 ARDITLLECVGKGRYGEVWRGSW-QGENVAVKIFSSRDE---KSWFRETELYNTVMLRHENILGFIASDMTSRHSSTQLW 82 (301)
T ss_dssp GGGCEEEEEEEECSSEEEEEEEE-TTEEEEEEEECGGGH---HHHHHHHHHHHHTCCCCTTBCCEEEEEEEEETTEEEEE
T ss_pred cCcEEEEEeeccCCCcEEEEEEE-CCEEEEEEEeccccc---hhhHHHHHHHHHhhccCcCeeeEEEeeccccCCCceeE
Confidence 57899999999999999999998 689999999975532 345556777766 799999999998643 35679
Q ss_pred EEEEccCCCCHHHHHhhCCCCCCHHHHHHHHHHHHHHHHHHhhcC----CCCCeEecCCCCCCeeeCCCCcEEEeeeccc
Q 005040 500 LVLEFMPNGSLEKWLYSHNYFLDILQRLNIMIDVGSALEYLHHCH----SSAPIIHCDLKPTNILLDENMVAHVSDFGIS 575 (717)
Q Consensus 500 lv~e~~~~g~L~~~l~~~~~~~~~~~~~~i~~~i~~~l~~LH~~~----~~~~ivH~dlk~~Nill~~~~~~kl~Dfgl~ 575 (717)
+||||+++|+|.++++.. .+++..+..++.|++.||+|||... .+.+|+||||||+||+++.++.+||+|||++
T Consensus 83 lv~e~~~~g~L~~~l~~~--~~~~~~~~~i~~~i~~~l~~lH~~~~~~~~~~~ivH~Dlkp~Nill~~~~~~kl~Dfg~a 160 (301)
T 3q4u_A 83 LITHYHEMGSLYDYLQLT--TLDTVSCLRIVLSIASGLAHLHIEIFGTQGKPAIAHRDLKSKNILVKKNGQCCIADLGLA 160 (301)
T ss_dssp EEECCCTTCBHHHHHTTC--CBCHHHHHHHHHHHHHHHHHHHSCBCSTTCBCEEECSCCCGGGEEECTTSCEEECCCTTC
T ss_pred EehhhccCCCHHHHHhhc--ccCHHHHHHHHHHHHHHHHHHHHhhhhccCCCCeecCCCChHhEEEcCCCCEEEeeCCCe
Confidence 999999999999999754 4899999999999999999999311 0368999999999999999999999999999
Q ss_pred cccCCCCCce--eeeccccCccccCCCccCCC------CcCcccchhhHHHHHHHHHhC----------CCCCCccccCc
Q 005040 576 KLLGEGEDSV--IQTMTMATIGYMAPEYGSEG------IVSTKCDVYSYGVLLMETFTE----------KKPTDEMFTGE 637 (717)
Q Consensus 576 ~~~~~~~~~~--~~~~~~~t~~y~aPE~~~~~------~~~~~~Dvws~G~il~el~tg----------~~p~~~~~~~~ 637 (717)
+......... ......||+.|+|||++.+. .++.++||||||+++|||++| +.||.......
T Consensus 161 ~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~~~~~~DvwslG~il~el~tg~~~~~~~~~~~~pf~~~~~~~ 240 (301)
T 3q4u_A 161 VMHSQSTNQLDVGNNPRVGTKRYMAPEVLDETIQVDCFDSYKRVDIWAFGLVLWEVARRMVSNGIVEDYKPPFYDVVPND 240 (301)
T ss_dssp EEEETTTTEEECCCCCCCCCGGGCCHHHHTTCCCTTCHHHHHHHHHHHHHHHHHHHHTTBCBTTBCCCCCCTTTTTSCSS
T ss_pred eecccccccccccccccccccceeChhhhcCcCCCCcccCCchhhHHHHHHHHHHHHhhhcCccccccccccccccCCCC
Confidence 8765433221 12334789999999988776 566899999999999999999 88887654444
Q ss_pred chHHHHHHhhCCCchhhhccccchhhhhhhhhhHHHHHHHHHHHhhccCCCCCCCCCHHHHHHHHHHh
Q 005040 638 MSLRRWVKESLPHRLTEVVDANLVREEQAFSDKMDCLFSIMDLALDCCMDTPHKRIHMTDAAAKLRKI 705 (717)
Q Consensus 638 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~cl~~~P~~Rpt~~ev~~~L~~~ 705 (717)
............... .+... .......++.++.+++.+||+.||++|||+.|+++.|+++
T Consensus 241 ~~~~~~~~~~~~~~~----~~~~~----~~~~~~~~~~~l~~li~~cl~~dP~~Rps~~~i~~~L~~i 300 (301)
T 3q4u_A 241 PSFEDMRKVVCVDQQ----RPNIP----NRWFSDPTLTSLAKLMKECWYQNPSARLTALRIKKTLTKI 300 (301)
T ss_dssp CCHHHHHHHHTTSCC----CCCCC----GGGGGSHHHHHHHHHHHHHCCSSGGGSCCHHHHHHHHHHH
T ss_pred cchhhhhHHHhccCC----CCCCC----hhhccCccHHHHHHHHHHHhhcChhhCCCHHHHHHHHhcc
Confidence 444333332211110 00010 0111234667899999999999999999999999999986
No 44
>3zgw_A Maternal embryonic leucine zipper kinase; transferase; HET: ANP; 2.60A {Homo sapiens}
Probab=100.00 E-value=1.8e-42 Score=362.51 Aligned_cols=251 Identities=26% Similarity=0.331 Sum_probs=197.4
Q ss_pred HhccCCccccccccccEEEEEEEec-CCCeEEEEEechhh-HHHHHHHHHHHHHHHhcCCCceeeEeeeeecCCeeEEEE
Q 005040 425 ATDEFNECNLLGTGGFGSVYKGTLS-DGTNVAIKIFNLQL-ERAFRSFDSECEILRNVRHRNLLKILGSCSNLDFKALVL 502 (717)
Q Consensus 425 ~~~~~~~~~~lg~G~~g~V~~~~~~-~~~~vavK~~~~~~-~~~~~~~~~e~~~l~~l~hpniv~~~~~~~~~~~~~lv~ 502 (717)
..++|++.+.||+|+||.||+|... +|+.||||++.... ....+.+.+|++++++++||||+++++++.+.+..++||
T Consensus 8 l~~~y~i~~~lG~G~~g~V~~a~~~~~~~~vAiK~~~~~~~~~~~~~~~~Ei~~l~~l~hpnIv~l~~~~~~~~~~~lv~ 87 (347)
T 3zgw_A 8 LLKYYELHETIGTGGFAKVKLACHILTGEMVAIKIMDKNTLGSDLPRIKTEIEALKNLRHQHICQLYHVLETANKIFMVL 87 (347)
T ss_dssp TTTTEEEEEEEEECSSCEEEEEEETTTCCEEEEEEEESSCC---CCHHHHHHHHHHTCCCTTBCCEEEEEECSSEEEEEE
T ss_pred HhcCeEEEEEEEcCCCeEEEEEEECCCCCEEEEEEEEccccchHHHHHHHHHHHHHhCCCCCEeeEEEEEEeCCEEEEEE
Confidence 3578999999999999999999974 89999999986543 233456889999999999999999999999999999999
Q ss_pred EccCCCCHHHHHhhCCCCCCHHHHHHHHHHHHHHHHHHhhcCCCCCeEecCCCCCCeeeCCCCcEEEeeeccccccCCCC
Q 005040 503 EFMPNGSLEKWLYSHNYFLDILQRLNIMIDVGSALEYLHHCHSSAPIIHCDLKPTNILLDENMVAHVSDFGISKLLGEGE 582 (717)
Q Consensus 503 e~~~~g~L~~~l~~~~~~~~~~~~~~i~~~i~~~l~~LH~~~~~~~ivH~dlk~~Nill~~~~~~kl~Dfgl~~~~~~~~ 582 (717)
||+++|+|.+++...+ .+++..+..++.|++.||.||| +.+|+||||||+||+++.++.+||+|||++.......
T Consensus 88 E~~~gg~L~~~l~~~~-~l~~~~~~~i~~qi~~aL~~LH----~~givHrDlkp~NIll~~~~~~kL~DFG~a~~~~~~~ 162 (347)
T 3zgw_A 88 EYCPGGELFDYIISQD-RLSEEETRVVFRQIVSAVAYVH----SQGYAHRDLKPENLLFDEYHKLKLIDFGLCAKPKGNK 162 (347)
T ss_dssp ECCTTCBHHHHHHHHS-SCCHHHHHHHHHHHHHHHHHHH----HTTCBCCCCCGGGEEECTTSCEEECCCTTCBC-----
T ss_pred eCCCCCCHHHHHHHcC-CCCHHHHHHHHHHHHHHHHHHH----HCCeEeCCccHHHEEEcCCCCEEEEeccCcccccCCC
Confidence 9999999999997654 3899999999999999999999 6789999999999999999999999999987654322
Q ss_pred CceeeeccccCccccCCCccCCCCc-CcccchhhHHHHHHHHHhCCCCCCccccCcchHHHHHHhhCCCchhhhccccch
Q 005040 583 DSVIQTMTMATIGYMAPEYGSEGIV-STKCDVYSYGVLLMETFTEKKPTDEMFTGEMSLRRWVKESLPHRLTEVVDANLV 661 (717)
Q Consensus 583 ~~~~~~~~~~t~~y~aPE~~~~~~~-~~~~Dvws~G~il~el~tg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 661 (717)
. ......+||+.|+|||++.+..+ +.++||||+||++|||++|+.||.+... ......+.....
T Consensus 163 ~-~~~~~~~gt~~y~aPE~~~~~~~~~~~~DiwSlG~il~ell~g~~Pf~~~~~--~~~~~~i~~~~~------------ 227 (347)
T 3zgw_A 163 D-YHLQTCCGSLAYAAPELIQGKSYLGSEADVWSMGILLYVLMCGFLPFDDDNV--MALYKKIMRGKY------------ 227 (347)
T ss_dssp ----------CGGGCCHHHHTTC---CCHHHHHHHHHHHHHHHHSSCSSCCSSH--HHHHHHHHHTCC------------
T ss_pred C-ccccccCCccCccCHHHHcCCCCCCcHhHHHHHHHHHHHHHHCCCCCCCCCH--HHHHHHHHcCCC------------
Confidence 2 12244578999999999888775 8999999999999999999999975321 111111111000
Q ss_pred hhhhhhhhhHHHHHHHHHHHhhccCCCCCCCCCHHHHHHH
Q 005040 662 REEQAFSDKMDCLFSIMDLALDCCMDTPHKRIHMTDAAAK 701 (717)
Q Consensus 662 ~~~~~~~~~~~~~~~l~~li~~cl~~~P~~Rpt~~ev~~~ 701 (717)
..+..++.++.+++.+||+.||++|||++|+++.
T Consensus 228 ------~~p~~~s~~~~~li~~~L~~dP~~Rps~~eil~h 261 (347)
T 3zgw_A 228 ------DVPKWLSPSSILLLQQMLQVDPKKRISMKNLLNH 261 (347)
T ss_dssp ------CCCTTCCHHHHHHHHHHTCSSGGGSCCHHHHHTC
T ss_pred ------CCCCCCCHHHHHHHHHHcccCHhHCcCHHHHhcC
Confidence 0011234567899999999999999999999863
No 45
>1tki_A Titin; serine kinase, muscle, autoinhibition; 2.00A {Homo sapiens} SCOP: d.144.1.7
Probab=100.00 E-value=1.1e-41 Score=354.16 Aligned_cols=251 Identities=20% Similarity=0.298 Sum_probs=208.0
Q ss_pred hccCCccccccccccEEEEEEEec-CCCeEEEEEechhhHHHHHHHHHHHHHHHhcCCCceeeEeeeeecCCeeEEEEEc
Q 005040 426 TDEFNECNLLGTGGFGSVYKGTLS-DGTNVAIKIFNLQLERAFRSFDSECEILRNVRHRNLLKILGSCSNLDFKALVLEF 504 (717)
Q Consensus 426 ~~~~~~~~~lg~G~~g~V~~~~~~-~~~~vavK~~~~~~~~~~~~~~~e~~~l~~l~hpniv~~~~~~~~~~~~~lv~e~ 504 (717)
.++|++.+.||+|+||.||+|... +++.||+|++.... .....+.+|+++++.++||||+++++++.+.+..++||||
T Consensus 4 ~~~y~~~~~lG~G~~g~Vy~~~~~~~~~~~a~K~~~~~~-~~~~~~~~E~~~l~~l~hpnIv~~~~~~~~~~~~~lv~e~ 82 (321)
T 1tki_A 4 YEKYMIAEDLGRGEFGIVHRCVETSSKKTYMAKFVKVKG-TDQVLVKKEISILNIARHRNILHLHESFESMEELVMIFEF 82 (321)
T ss_dssp TTTEEEEEEEEECSSEEEEEEEETTTTEEEEEEEECCCT-HHHHHHHHHHHHHHHSCCTTBCCEEEEEEETTEEEEEECC
T ss_pred hhceEeeeEEecCCCeEEEEEEECCCCcEEEEEEEecCc-ccHHHHHHHHHHHHhCCCCCCCeEeEEEecCCEEEEEEEe
Confidence 468999999999999999999976 68899999987543 3345688999999999999999999999999999999999
Q ss_pred cCCCCHHHHHhhCCCCCCHHHHHHHHHHHHHHHHHHhhcCCCCCeEecCCCCCCeeeCC--CCcEEEeeeccccccCCCC
Q 005040 505 MPNGSLEKWLYSHNYFLDILQRLNIMIDVGSALEYLHHCHSSAPIIHCDLKPTNILLDE--NMVAHVSDFGISKLLGEGE 582 (717)
Q Consensus 505 ~~~g~L~~~l~~~~~~~~~~~~~~i~~~i~~~l~~LH~~~~~~~ivH~dlk~~Nill~~--~~~~kl~Dfgl~~~~~~~~ 582 (717)
+++|+|.+++......+++..+..++.|++.||.||| +.+|+||||||+||+++. ++.+||+|||++.......
T Consensus 83 ~~g~~L~~~l~~~~~~~~~~~~~~i~~qi~~al~~lH----~~givH~Dlkp~NIl~~~~~~~~~kl~Dfg~a~~~~~~~ 158 (321)
T 1tki_A 83 ISGLDIFERINTSAFELNEREIVSYVHQVCEALQFLH----SHNIGHFDIRPENIIYQTRRSSTIKIIEFGQARQLKPGD 158 (321)
T ss_dssp CCCCBHHHHHTSSSCCCCHHHHHHHHHHHHHHHHHHH----HTTEECCCCCGGGEEESSSSCCCEEECCCTTCEECCTTC
T ss_pred CCCCCHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHH----HCCCCcCCCCHHHEEEccCCCCCEEEEECCCCeECCCCC
Confidence 9999999999877667999999999999999999999 679999999999999997 7899999999998875433
Q ss_pred CceeeeccccCccccCCCccCCCCcCcccchhhHHHHHHHHHhCCCCCCccccCcchHHHHHHhhCCCchhhhccccchh
Q 005040 583 DSVIQTMTMATIGYMAPEYGSEGIVSTKCDVYSYGVLLMETFTEKKPTDEMFTGEMSLRRWVKESLPHRLTEVVDANLVR 662 (717)
Q Consensus 583 ~~~~~~~~~~t~~y~aPE~~~~~~~~~~~Dvws~G~il~el~tg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 662 (717)
. .....||+.|+|||++.+..++.++||||+|+++|||++|+.||...... .....+...... ..
T Consensus 159 ~---~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~~ll~g~~pf~~~~~~--~~~~~i~~~~~~---------~~- 223 (321)
T 1tki_A 159 N---FRLLFTAPEYYAPEVHQHDVVSTATDMWSLGTLVYVLLSGINPFLAETNQ--QIIENIMNAEYT---------FD- 223 (321)
T ss_dssp E---EEEEESCGGGSCHHHHTTCEECHHHHHHHHHHHHHHHHHSSCTTCCSSHH--HHHHHHHHTCCC---------CC-
T ss_pred c---cccccCChhhcCcHHhcCCCCCchhhHHHHHHHHHHHHhCCCCCcCCCHH--HHHHHHHcCCCC---------CC-
Confidence 2 23456899999999999988999999999999999999999999763221 111111111000 00
Q ss_pred hhhhhhhhHHHHHHHHHHHhhccCCCCCCCCCHHHHHH
Q 005040 663 EEQAFSDKMDCLFSIMDLALDCCMDTPHKRIHMTDAAA 700 (717)
Q Consensus 663 ~~~~~~~~~~~~~~l~~li~~cl~~~P~~Rpt~~ev~~ 700 (717)
......++.++.+++.+||..||++|||+.|+++
T Consensus 224 ----~~~~~~~s~~~~~li~~~L~~dp~~Rpt~~e~l~ 257 (321)
T 1tki_A 224 ----EEAFKEISIEAMDFVDRLLVKERKSRMTASEALQ 257 (321)
T ss_dssp ----HHHHTTSCHHHHHHHHTTSCSSGGGSCCHHHHHH
T ss_pred ----hhhhccCCHHHHHHHHHHcCCChhHCcCHHHHhc
Confidence 0111234567889999999999999999999987
No 46
>1o6l_A RAC-beta serine/threonine protein kinase; protein kinase, transferase, serine/threonine-protein kinase; HET: TPO ANP; 1.6A {Homo sapiens} SCOP: d.144.1.7 PDB: 2jdo_A* 2jdr_A* 2uw9_A* 2x37_A* 2x39_A* 2xh5_A* 3d0e_A* 3e87_A* 3e88_A* 3e8d_A* 1o6k_A* 1mrv_A 1mry_A 1gzn_A 1gzk_A 1gzo_A 3qkl_A* 3ocb_A* 3ow4_A* 3qkk_A* ...
Probab=100.00 E-value=1.3e-41 Score=355.16 Aligned_cols=248 Identities=22% Similarity=0.265 Sum_probs=205.3
Q ss_pred hccCCccccccccccEEEEEEEec-CCCeEEEEEechhh---HHHHHHHHHHHHHHHhcCCCceeeEeeeeecCCeeEEE
Q 005040 426 TDEFNECNLLGTGGFGSVYKGTLS-DGTNVAIKIFNLQL---ERAFRSFDSECEILRNVRHRNLLKILGSCSNLDFKALV 501 (717)
Q Consensus 426 ~~~~~~~~~lg~G~~g~V~~~~~~-~~~~vavK~~~~~~---~~~~~~~~~e~~~l~~l~hpniv~~~~~~~~~~~~~lv 501 (717)
.++|+..+.||+|+||.||+|+.+ +|+.||+|++++.. ......+.+|+++++.++||||+++++++.+.+..|+|
T Consensus 4 ~~~y~~~~~lG~G~fg~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~~E~~~l~~l~hp~iv~l~~~~~~~~~~~lv 83 (337)
T 1o6l_A 4 MNDFDYLKLLGKGTFGKVILVREKATGRYYAMKILRKEVIIAKDEVAHTVTESRVLQNTRHPFLTALKYAFQTHDRLCFV 83 (337)
T ss_dssp GGGEEEEEEEEECSSEEEEEEEETTTCCEEEEEEEEHHHHHHTTCHHHHHHHHHHHHSCCCTTBCCEEEEEECSSEEEEE
T ss_pred hHHeEEEEEEecCCCeEEEEEEECCCCCEEEEEEEeHHHhhhhhHHHHHHHHHHHHHhCCCCcCcceEEEEEeCCEEEEE
Confidence 468999999999999999999976 79999999997653 23456788899999999999999999999999999999
Q ss_pred EEccCCCCHHHHHhhCCCCCCHHHHHHHHHHHHHHHHHHhhcCCCCCeEecCCCCCCeeeCCCCcEEEeeeccccccCCC
Q 005040 502 LEFMPNGSLEKWLYSHNYFLDILQRLNIMIDVGSALEYLHHCHSSAPIIHCDLKPTNILLDENMVAHVSDFGISKLLGEG 581 (717)
Q Consensus 502 ~e~~~~g~L~~~l~~~~~~~~~~~~~~i~~~i~~~l~~LH~~~~~~~ivH~dlk~~Nill~~~~~~kl~Dfgl~~~~~~~ 581 (717)
|||+++|+|.+++...+ .+++..+..++.||+.||+||| +.+|+||||||+||+++.++++||+|||+++.....
T Consensus 84 ~E~~~gg~L~~~l~~~~-~~~~~~~~~~~~qi~~aL~~LH----~~~ivHrDlkp~NIll~~~g~vkL~DFG~a~~~~~~ 158 (337)
T 1o6l_A 84 MEYANGGELFFHLSRER-VFTEERARFYGAEIVSALEYLH----SRDVVYRDIKLENLMLDKDGHIKITDFGLCKEGISD 158 (337)
T ss_dssp EECCTTCBHHHHHHHHS-CCCHHHHHHHHHHHHHHHHHHH----HTTCBCCCCCGGGEEECTTSCEEECCCTTCBCSCCT
T ss_pred EeCCCCCcHHHHHHhcC-CCCHHHHHHHHHHHHHHHHHHH----HCCeecCcCCHHHEEECCCCCEEEeeccchhhcccC
Confidence 99999999999998654 4899999999999999999999 678999999999999999999999999999864322
Q ss_pred CCceeeeccccCccccCCCccCCCCcCcccchhhHHHHHHHHHhCCCCCCccccCcchHHHHHHhhCCCchhhhccccch
Q 005040 582 EDSVIQTMTMATIGYMAPEYGSEGIVSTKCDVYSYGVLLMETFTEKKPTDEMFTGEMSLRRWVKESLPHRLTEVVDANLV 661 (717)
Q Consensus 582 ~~~~~~~~~~~t~~y~aPE~~~~~~~~~~~Dvws~G~il~el~tg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 661 (717)
.. .....+||+.|+|||++.+..++.++||||+||++|||++|+.||..... ......+.... ..+
T Consensus 159 ~~--~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~ell~g~~Pf~~~~~--~~~~~~i~~~~---------~~~- 224 (337)
T 1o6l_A 159 GA--TMKTFCGTPEYLAPEVLEDNDYGRAVDWWGLGVVMYEMMCGRLPFYNQDH--ERLFELILMEE---------IRF- 224 (337)
T ss_dssp TC--CBCCCEECGGGCCGGGGSSSCBCTTHHHHHHHHHHHHHHHSSCSSCCSSH--HHHHHHHHHCC---------CCC-
T ss_pred CC--cccccccChhhCChhhhcCCCCCchhhcccchhHHHHHhcCCCCCCCCCH--HHHHHHHHcCC---------CCC-
Confidence 21 22345789999999999999999999999999999999999999965321 11111111100 000
Q ss_pred hhhhhhhhhHHHHHHHHHHHhhccCCCCCCCC-----CHHHHHH
Q 005040 662 REEQAFSDKMDCLFSIMDLALDCCMDTPHKRI-----HMTDAAA 700 (717)
Q Consensus 662 ~~~~~~~~~~~~~~~l~~li~~cl~~~P~~Rp-----t~~ev~~ 700 (717)
+..++.++.+++.+||+.||++|| +++|+++
T Consensus 225 --------p~~~s~~~~~li~~lL~~dP~~R~g~~~~~~~ei~~ 260 (337)
T 1o6l_A 225 --------PRTLSPEAKSLLAGLLKKDPKQRLGGGPSDAKEVME 260 (337)
T ss_dssp --------CTTSCHHHHHHHHHHTCSSTTTSTTCSTTTHHHHHT
T ss_pred --------CCCCCHHHHHHHHHHhhcCHHHhcCCCCCCHHHHHc
Confidence 112345688999999999999999 8988875
No 47
>3tt0_A Basic fibroblast growth factor receptor 1; kinase domain, transferase, transferase-transferase inhibito; HET: 07J; 2.80A {Homo sapiens}
Probab=100.00 E-value=1.5e-41 Score=362.50 Aligned_cols=264 Identities=26% Similarity=0.413 Sum_probs=217.2
Q ss_pred hccCCccccccccccEEEEEEEec--------CCCeEEEEEechhh-HHHHHHHHHHHHHHHhc-CCCceeeEeeeeecC
Q 005040 426 TDEFNECNLLGTGGFGSVYKGTLS--------DGTNVAIKIFNLQL-ERAFRSFDSECEILRNV-RHRNLLKILGSCSNL 495 (717)
Q Consensus 426 ~~~~~~~~~lg~G~~g~V~~~~~~--------~~~~vavK~~~~~~-~~~~~~~~~e~~~l~~l-~hpniv~~~~~~~~~ 495 (717)
.++|.+.+.||+|+||.||+|+.. ++..||||++.... ....+.+.+|+++++++ +||||+++++++.+.
T Consensus 68 ~~~y~i~~~LG~G~~g~Vy~a~~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~~hpnIv~~~~~~~~~ 147 (382)
T 3tt0_A 68 RDRLVLGKPLGEGAFGQVVLAEAIGLDKDKPNRVTKVAVKMLKSDATEKDLSDLISEMEMMKMIGKHKNIINLLGACTQD 147 (382)
T ss_dssp GGGEEEEEEEEECSSEEEEEEEEETSSTTCTTCEEEEEEEEECTTCCHHHHHHHHHHHHHHHHHCCCTTBCCEEEEECSS
T ss_pred hhheEeeeEEecCCCeEEEEEEEccccccccccceEEEEEeeccccCHHHHHHHHHHHHHHHHhcCCchhhhheeeeccC
Confidence 468999999999999999999852 33579999997654 34457788999999999 899999999999999
Q ss_pred CeeEEEEEccCCCCHHHHHhhCC---------------CCCCHHHHHHHHHHHHHHHHHHhhcCCCCCeEecCCCCCCee
Q 005040 496 DFKALVLEFMPNGSLEKWLYSHN---------------YFLDILQRLNIMIDVGSALEYLHHCHSSAPIIHCDLKPTNIL 560 (717)
Q Consensus 496 ~~~~lv~e~~~~g~L~~~l~~~~---------------~~~~~~~~~~i~~~i~~~l~~LH~~~~~~~ivH~dlk~~Nil 560 (717)
+..++||||+++|+|.+++.... ..+++..+..++.|++.||+||| +.+|+||||||+||+
T Consensus 148 ~~~~lv~e~~~~g~L~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~~qi~~aL~~LH----~~~ivH~Dlkp~NIl 223 (382)
T 3tt0_A 148 GPLYVIVEYASKGNLREYLQARRPPGLEYSYNPSHNPEEQLSSKDLVSCAYQVARGMEYLA----SKKCIHRDLAARNVL 223 (382)
T ss_dssp SSCEEEEECCTTCBHHHHHHHTCCSSSSSCCCCCSSCCCCCCHHHHHHHHHHHHHHHHHHH----HTTCCCSCCCGGGEE
T ss_pred CceEEEEEecCCCcHHHHHHHhcccccccccccccccccccCHHHHHHHHHHHHHHHHHHH----hCCEecCCCCcceEE
Confidence 99999999999999999998653 35899999999999999999999 678999999999999
Q ss_pred eCCCCcEEEeeeccccccCCCCCceeeeccccCccccCCCccCCCCcCcccchhhHHHHHHHHHh-CCCCCCccccCcch
Q 005040 561 LDENMVAHVSDFGISKLLGEGEDSVIQTMTMATIGYMAPEYGSEGIVSTKCDVYSYGVLLMETFT-EKKPTDEMFTGEMS 639 (717)
Q Consensus 561 l~~~~~~kl~Dfgl~~~~~~~~~~~~~~~~~~t~~y~aPE~~~~~~~~~~~Dvws~G~il~el~t-g~~p~~~~~~~~~~ 639 (717)
++.++.+||+|||+++...............+|+.|+|||++.+..++.++|||||||++|||++ |+.||..... ..
T Consensus 224 l~~~~~~kL~DFG~a~~~~~~~~~~~~~~~~~t~~y~aPE~~~~~~~~~~~DiwslG~il~ellt~g~~p~~~~~~--~~ 301 (382)
T 3tt0_A 224 VTEDNVMKIADFGLARDIHHIDYYKKTTNGRLPVKWMAPEALFDRIYTHQSDVWSFGVLLWEIFTLGGSPYPGVPV--EE 301 (382)
T ss_dssp ECTTCCEEECSCSCCCCSSCCCTTCCCTTCCCGGGGSCHHHHHSCCCCHHHHHHHHHHHHHHHHTTSCCSSTTCCH--HH
T ss_pred EcCCCcEEEcccCcccccccccccccccCCCCCcceeCHHHhcCCCCCchhHHHHHHHHHHHHHhCCCCCCCCCCH--HH
Confidence 99999999999999987755443333344567889999999999999999999999999999999 9999875321 11
Q ss_pred HHHHHHhhCCCchhhhccccchhhhhhhhhhHHHHHHHHHHHhhccCCCCCCCCCHHHHHHHHHHhHHhhccc
Q 005040 640 LRRWVKESLPHRLTEVVDANLVREEQAFSDKMDCLFSIMDLALDCCMDTPHKRIHMTDAAAKLRKIKAKFLDD 712 (717)
Q Consensus 640 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~cl~~~P~~Rpt~~ev~~~L~~~~~~~~~~ 712 (717)
....+...... .....++.++.+++.+||+.||++|||++|+++.|+++.+...++
T Consensus 302 ~~~~~~~~~~~-----------------~~~~~~~~~l~~li~~~l~~dP~~Rps~~ell~~L~~~~~~~~~~ 357 (382)
T 3tt0_A 302 LFKLLKEGHRM-----------------DKPSNCTNELYMMMRDCWHAVPSQRPTFKQLVEDLDRIVALTSNQ 357 (382)
T ss_dssp HHHHHHTTCCC-----------------CCCSSCCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHHHHSCSC
T ss_pred HHHHHHcCCCC-----------------CCCccCCHHHHHHHHHHcCCChhhCcCHHHHHHHHHHHHHHHhcC
Confidence 22222111100 011134566889999999999999999999999999998765443
No 48
>1luf_A Muscle-specific tyrosine kinase receptor MUSK; phosphorylation, signal transduction, MASS spectrometry, transferase; 2.05A {Rattus norvegicus} SCOP: d.144.1.7
Probab=100.00 E-value=4.2e-42 Score=362.01 Aligned_cols=267 Identities=24% Similarity=0.384 Sum_probs=213.9
Q ss_pred HHhccCCccccccccccEEEEEEEec------CCCeEEEEEechhh-HHHHHHHHHHHHHHHhcCCCceeeEeeeeecCC
Q 005040 424 RATDEFNECNLLGTGGFGSVYKGTLS------DGTNVAIKIFNLQL-ERAFRSFDSECEILRNVRHRNLLKILGSCSNLD 496 (717)
Q Consensus 424 ~~~~~~~~~~~lg~G~~g~V~~~~~~------~~~~vavK~~~~~~-~~~~~~~~~e~~~l~~l~hpniv~~~~~~~~~~ 496 (717)
...++|++.+.||+|+||.||+|+.. +++.||||+++... ....+.+.+|++++++++||||+++++++.+.+
T Consensus 44 ~~~~~~~~~~~lg~G~~g~Vy~~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~hp~iv~~~~~~~~~~ 123 (343)
T 1luf_A 44 YPRNNIEYVRDIGEGAFGRVFQARAPGLLPYEPFTMVAVKMLKEEASADMQADFQREAALMAEFDNPNIVKLLGVCAVGK 123 (343)
T ss_dssp CCGGGCEEEEEEEECSSCEEEEEEEETSSTTSSEEEEEEEECCTTCCHHHHHHHHHHHHHHHTCCCTTBCCEEEEECSSS
T ss_pred ecHHHCeeeeeeeecCCeeEEEEEecCcCCCCCceeEEEEEeccccCHHHHHHHHHHHHHHHhCCCCCEEEEEEEEccCC
Confidence 34578999999999999999999974 34789999997653 344567899999999999999999999999999
Q ss_pred eeEEEEEccCCCCHHHHHhhCC-----------------------CCCCHHHHHHHHHHHHHHHHHHhhcCCCCCeEecC
Q 005040 497 FKALVLEFMPNGSLEKWLYSHN-----------------------YFLDILQRLNIMIDVGSALEYLHHCHSSAPIIHCD 553 (717)
Q Consensus 497 ~~~lv~e~~~~g~L~~~l~~~~-----------------------~~~~~~~~~~i~~~i~~~l~~LH~~~~~~~ivH~d 553 (717)
..++||||+++|+|.+++.... ..+++..++.++.|+++||.||| +.+|+|||
T Consensus 124 ~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~~qi~~~l~~LH----~~~ivH~D 199 (343)
T 1luf_A 124 PMCLLFEYMAYGDLNEFLRSMSPHTVCSLSHSDLSTRARVSSPGPPPLSCAEQLCIARQVAAGMAYLS----ERKFVHRD 199 (343)
T ss_dssp SCEEEEECCTTCBHHHHHHHTCC----------------------CCCCHHHHHHHHHHHHHHHHHHH----HTTCCCSC
T ss_pred ceEEEEecCCCCcHHHHHHHhCcccccccccccccccccccccCCCCCCHHHHHHHHHHHHHHHHHHH----hCCeecCC
Confidence 9999999999999999998642 45899999999999999999999 67899999
Q ss_pred CCCCCeeeCCCCcEEEeeeccccccCCCCCceeeeccccCccccCCCccCCCCcCcccchhhHHHHHHHHHh-CCCCCCc
Q 005040 554 LKPTNILLDENMVAHVSDFGISKLLGEGEDSVIQTMTMATIGYMAPEYGSEGIVSTKCDVYSYGVLLMETFT-EKKPTDE 632 (717)
Q Consensus 554 lk~~Nill~~~~~~kl~Dfgl~~~~~~~~~~~~~~~~~~t~~y~aPE~~~~~~~~~~~Dvws~G~il~el~t-g~~p~~~ 632 (717)
|||+||+++.++.+||+|||++................+|+.|+|||++.+..++.++||||||+++|||++ |+.||..
T Consensus 200 lkp~NIl~~~~~~~kl~Dfg~~~~~~~~~~~~~~~~~~~t~~y~aPE~~~~~~~~~~~Di~slG~il~el~t~g~~p~~~ 279 (343)
T 1luf_A 200 LATRNCLVGENMVVKIADFGLSRNIYSADYYKADGNDAIPIRWMPPESIFYNRYTTESDVWAYGVVLWEIFSYGLQPYYG 279 (343)
T ss_dssp CSGGGEEECGGGCEEECCCSCHHHHTGGGCBC----CCBCGGGCCHHHHHHCCCCHHHHHHHHHHHHHHHHTTTCCTTTT
T ss_pred CCcceEEECCCCeEEEeecCCCcccccCccccccCCCcccceecChhhhccCCcCcccccHHHHHHHHHHHhcCCCcCCC
Confidence 999999999999999999999987654332233344567899999999888889999999999999999999 9999975
Q ss_pred cccCcchHHHHHHhhCCCchhhhccccchhhhhhhhhhHHHHHHHHHHHhhccCCCCCCCCCHHHHHHHHHHhHHhhccc
Q 005040 633 MFTGEMSLRRWVKESLPHRLTEVVDANLVREEQAFSDKMDCLFSIMDLALDCCMDTPHKRIHMTDAAAKLRKIKAKFLDD 712 (717)
Q Consensus 633 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~cl~~~P~~Rpt~~ev~~~L~~~~~~~~~~ 712 (717)
.... .....+...... ..+..++.++.+++.+||+.||++|||+.++++.|+++..++...
T Consensus 280 ~~~~--~~~~~~~~~~~~-----------------~~~~~~~~~l~~li~~~l~~~p~~Rps~~~~~~~L~~~~~~~~~~ 340 (343)
T 1luf_A 280 MAHE--EVIYYVRDGNIL-----------------ACPENCPLELYNLMRLCWSKLPADRPSFCSIHRILQRMCERAEGT 340 (343)
T ss_dssp SCHH--HHHHHHHTTCCC-----------------CCCTTCCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHTTC-----
T ss_pred CChH--HHHHHHhCCCcC-----------------CCCCCCCHHHHHHHHHHcccCcccCCCHHHHHHHHHHHHhhhhhh
Confidence 3221 111111111000 011134566889999999999999999999999999998776654
Q ss_pred h
Q 005040 713 V 713 (717)
Q Consensus 713 ~ 713 (717)
+
T Consensus 341 ~ 341 (343)
T 1luf_A 341 V 341 (343)
T ss_dssp -
T ss_pred c
Confidence 3
No 49
>1t46_A HOMO sapiens V-KIT hardy-zuckerman 4 feline sarcoma viral oncogene homolog; kinase, structure, inhibitor, STI-571, gleevec, transferase activator; HET: STI; 1.60A {Homo sapiens} SCOP: d.144.1.7 PDB: 1pkg_A* 1t45_A 3g0e_A* 3g0f_A*
Probab=100.00 E-value=1.7e-41 Score=352.58 Aligned_cols=266 Identities=23% Similarity=0.378 Sum_probs=218.9
Q ss_pred hccCCccccccccccEEEEEEEe------cCCCeEEEEEechhh-HHHHHHHHHHHHHHHhc-CCCceeeEeeeeecCCe
Q 005040 426 TDEFNECNLLGTGGFGSVYKGTL------SDGTNVAIKIFNLQL-ERAFRSFDSECEILRNV-RHRNLLKILGSCSNLDF 497 (717)
Q Consensus 426 ~~~~~~~~~lg~G~~g~V~~~~~------~~~~~vavK~~~~~~-~~~~~~~~~e~~~l~~l-~hpniv~~~~~~~~~~~ 497 (717)
.++|+..+.||+|+||.||+|.+ .+++.||+|++.... ....+.+.+|+++++++ +||||+++++++.+.+.
T Consensus 22 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~~h~~i~~~~~~~~~~~~ 101 (313)
T 1t46_A 22 RNRLSFGKTLGAGAFGKVVEATAYGLIKSDAAMTVAVKMLKPSAHLTEREALMSELKVLSYLGNHMNIVNLLGACTIGGP 101 (313)
T ss_dssp GGGEEEEEEEEECSSEEEEEEEEESSSSTTCEEEEEEEEECTTCCHHHHHHHHHHHHHHHHHCCCTTBCCEEEEECSSSS
T ss_pred hhhhhHHHhhCccCCcceEEEEEeeccccchhhhhHHHhcCcchhHHHHHHHHHHHHHHhhcccCCCeeeEEEEEecCCC
Confidence 46899999999999999999985 256789999997554 23457789999999999 99999999999999999
Q ss_pred eEEEEEccCCCCHHHHHhhCCC-----------------CCCHHHHHHHHHHHHHHHHHHhhcCCCCCeEecCCCCCCee
Q 005040 498 KALVLEFMPNGSLEKWLYSHNY-----------------FLDILQRLNIMIDVGSALEYLHHCHSSAPIIHCDLKPTNIL 560 (717)
Q Consensus 498 ~~lv~e~~~~g~L~~~l~~~~~-----------------~~~~~~~~~i~~~i~~~l~~LH~~~~~~~ivH~dlk~~Nil 560 (717)
.++||||+++|+|.+++..... .+++..+..++.|+++||.||| +.+|+||||||+||+
T Consensus 102 ~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~qi~~~l~~lH----~~~i~H~dlkp~Nil 177 (313)
T 1t46_A 102 TLVITEYCCYGDLLNFLRRKRDSFICSKTSPAIMEDDELALDLEDLLSFSYQVAKGMAFLA----SKNCIHRDLAARNIL 177 (313)
T ss_dssp CEEEEECCTTEEHHHHHHHTTTTC--------------CCCCHHHHHHHHHHHHHHHHHHH----HTTCCCSCCSGGGEE
T ss_pred cEEEEecCCCCCHHHHHHhcccccccccccccccccccccCCHHHHHHHHHHHHHHHHHHH----HCCeecCCCccceEE
Confidence 9999999999999999986542 4899999999999999999999 678999999999999
Q ss_pred eCCCCcEEEeeeccccccCCCCCceeeeccccCccccCCCccCCCCcCcccchhhHHHHHHHHHh-CCCCCCccccCcch
Q 005040 561 LDENMVAHVSDFGISKLLGEGEDSVIQTMTMATIGYMAPEYGSEGIVSTKCDVYSYGVLLMETFT-EKKPTDEMFTGEMS 639 (717)
Q Consensus 561 l~~~~~~kl~Dfgl~~~~~~~~~~~~~~~~~~t~~y~aPE~~~~~~~~~~~Dvws~G~il~el~t-g~~p~~~~~~~~~~ 639 (717)
++.++.+||+|||++................+|+.|+|||.+.+..++.++||||||+++|||++ |+.||....... .
T Consensus 178 ~~~~~~~kl~Dfg~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~ellt~g~~p~~~~~~~~-~ 256 (313)
T 1t46_A 178 LTHGRITKICDFGLARDIKNDSNYVVKGNARLPVKWMAPESIFNCVYTFESDVWSYGIFLWELFSLGSSPYPGMPVDS-K 256 (313)
T ss_dssp EETTTEEEECCCGGGSCTTSCTTSEECSSSEECGGGCCHHHHHHCCCCHHHHHHHHHHHHHHHHTTTCCSSTTCCSSH-H
T ss_pred EcCCCCEEEccccccccccccccceeccCCCCcceeeChHHhcCCCCChHHHHHHHHHHHHHHHhCCCCCCCcccchh-H
Confidence 99999999999999988765544434445567889999999888899999999999999999999 999997643221 2
Q ss_pred HHHHHHhhCCCchhhhccccchhhhhhhhhhHHHHHHHHHHHhhccCCCCCCCCCHHHHHHHHHHhHHhhccch
Q 005040 640 LRRWVKESLPHRLTEVVDANLVREEQAFSDKMDCLFSIMDLALDCCMDTPHKRIHMTDAAAKLRKIKAKFLDDV 713 (717)
Q Consensus 640 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~cl~~~P~~Rpt~~ev~~~L~~~~~~~~~~~ 713 (717)
............ ....++.++.+++.+||+.||++|||+.|+++.|+++.....+++
T Consensus 257 ~~~~~~~~~~~~-----------------~~~~~~~~l~~li~~~l~~dp~~Rps~~ell~~L~~~~~~~~~~i 313 (313)
T 1t46_A 257 FYKMIKEGFRML-----------------SPEHAPAEMYDIMKTCWDADPLKRPTFKQIVQLIEKQISESTNHI 313 (313)
T ss_dssp HHHHHHHTCCCC-----------------CCTTSCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHHHHTCC--
T ss_pred HHHHhccCCCCC-----------------CcccCCHHHHHHHHHHcCCCchhCcCHHHHHHHHHHHHHHhhcCC
Confidence 222222111100 011334568899999999999999999999999999988776653
No 50
>3poz_A Epidermal growth factor receptor; kinase domain, anti-oncogene, ATP-binding, cell cycle, disea mutation, glycoprotein, membrane, nucleotide-binding; HET: 03P; 1.50A {Homo sapiens} SCOP: d.144.1.7 PDB: 2itx_A* 2ity_A* 2j5f_A* 2j6m_A* 2itw_A* 1m14_A 1m17_A* 3vjo_A* 2gs6_A* 2gs2_A* 2rf9_A 4g5j_A* 1xkk_A* 2eb2_A 3gop_A 2eb3_A* 2itn_A* 2ito_A* 2itp_A* 2itq_A* ...
Probab=100.00 E-value=2.7e-42 Score=360.41 Aligned_cols=258 Identities=26% Similarity=0.435 Sum_probs=205.2
Q ss_pred hccCCccccccccccEEEEEEEec-CCCe----EEEEEechhh-HHHHHHHHHHHHHHHhcCCCceeeEeeeeecCCeeE
Q 005040 426 TDEFNECNLLGTGGFGSVYKGTLS-DGTN----VAIKIFNLQL-ERAFRSFDSECEILRNVRHRNLLKILGSCSNLDFKA 499 (717)
Q Consensus 426 ~~~~~~~~~lg~G~~g~V~~~~~~-~~~~----vavK~~~~~~-~~~~~~~~~e~~~l~~l~hpniv~~~~~~~~~~~~~ 499 (717)
.++|+..+.||+|+||+||+|.+. +++. ||+|.+.... ....+.+.+|++++++++||||+++++++.+.. .+
T Consensus 14 ~~~y~~~~~lG~G~~g~Vy~~~~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~-~~ 92 (327)
T 3poz_A 14 ETEFKKIKVLGSGAFGTVYKGLWIPEGEKVKIPVAIKELREATSPKANKEILDEAYVMASVDNPHVCRLLGICLTST-VQ 92 (327)
T ss_dssp GGGEEEEEEEEEETTEEEEEEEECC----CCEEEEEEEC-------CHHHHHHHHHHHHHCCBTTBCCEEEEEESSS-EE
T ss_pred HHHcccceEEeeCCCeEEEEEEEcCCCceEEEEEEEeecccccCHHHHHHHHHHHHHHHhCCCCCEeEEEEEEecCC-eE
Confidence 368999999999999999999964 4443 5888875443 334567899999999999999999999998755 68
Q ss_pred EEEEccCCCCHHHHHhhCCCCCCHHHHHHHHHHHHHHHHHHhhcCCCCCeEecCCCCCCeeeCCCCcEEEeeeccccccC
Q 005040 500 LVLEFMPNGSLEKWLYSHNYFLDILQRLNIMIDVGSALEYLHHCHSSAPIIHCDLKPTNILLDENMVAHVSDFGISKLLG 579 (717)
Q Consensus 500 lv~e~~~~g~L~~~l~~~~~~~~~~~~~~i~~~i~~~l~~LH~~~~~~~ivH~dlk~~Nill~~~~~~kl~Dfgl~~~~~ 579 (717)
+|+||+.+|+|.+++......+++..+..++.|++.||.||| +.+|+||||||+||+++.++.+||+|||+++...
T Consensus 93 ~v~e~~~~g~L~~~l~~~~~~~~~~~~~~~~~qi~~~l~~LH----~~~ivH~Dikp~NIll~~~~~~kl~Dfg~a~~~~ 168 (327)
T 3poz_A 93 LITQLMPFGCLLDYVREHKDNIGSQYLLNWCVQIAKGMNYLE----DRRLVHRDLAARNVLVKTPQHVKITDFGLAKLLG 168 (327)
T ss_dssp EEEECCTTCBHHHHHHHSTTSCCHHHHHHHHHHHHHHHHHHH----HTTCCCSCCCGGGEEEEETTEEEECCTTHHHHHT
T ss_pred EEEEecCCCcHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHh----hCCeeCCCCChheEEECCCCCEEEccCcceeEcc
Confidence 999999999999999987777999999999999999999999 6789999999999999999999999999999876
Q ss_pred CCCCceeeeccccCccccCCCccCCCCcCcccchhhHHHHHHHHHh-CCCCCCccccCcchHHHHHHhhCCCchhhhccc
Q 005040 580 EGEDSVIQTMTMATIGYMAPEYGSEGIVSTKCDVYSYGVLLMETFT-EKKPTDEMFTGEMSLRRWVKESLPHRLTEVVDA 658 (717)
Q Consensus 580 ~~~~~~~~~~~~~t~~y~aPE~~~~~~~~~~~Dvws~G~il~el~t-g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 658 (717)
............+|+.|+|||++.+..++.++||||||+++|||++ |+.||...... .....+......
T Consensus 169 ~~~~~~~~~~~~~t~~y~aPE~~~~~~~~~~~Di~slG~il~ellt~g~~p~~~~~~~--~~~~~~~~~~~~-------- 238 (327)
T 3poz_A 169 AEEKEYHAEGGKVPIKWMALESILHRIYTHQSDVWSYGVTVWELMTFGSKPYDGIPAS--EISSILEKGERL-------- 238 (327)
T ss_dssp TTCC-------CCCGGGSCHHHHHHCCCCHHHHHHHHHHHHHHHHTTSCCTTTTCCGG--GHHHHHHTTCCC--------
T ss_pred CCcccccccCCCccccccChHHhccCCCCchhhhhhhHHHHHHHHhcCCCCccCCCHH--HHHHHHHcCCCC--------
Confidence 5544433444567889999999999999999999999999999999 99999764322 222222211100
Q ss_pred cchhhhhhhhhhHHHHHHHHHHHhhccCCCCCCCCCHHHHHHHHHHhHH
Q 005040 659 NLVREEQAFSDKMDCLFSIMDLALDCCMDTPHKRIHMTDAAAKLRKIKA 707 (717)
Q Consensus 659 ~~~~~~~~~~~~~~~~~~l~~li~~cl~~~P~~Rpt~~ev~~~L~~~~~ 707 (717)
+....++.++.+++.+||+.||++|||+.|+++.|+++.+
T Consensus 239 ---------~~~~~~~~~~~~li~~~l~~~p~~Rps~~ell~~l~~~~~ 278 (327)
T 3poz_A 239 ---------PQPPICTIDVYMIMVKCWMIDADSRPKFRELIIEFSKMAR 278 (327)
T ss_dssp ---------CCCTTBCHHHHHHHHHHTCSCGGGSCCHHHHHHHHHHHHT
T ss_pred ---------CCCccCCHHHHHHHHHHcCCChhhCCCHHHHHHHHHHHHh
Confidence 1112344568899999999999999999999999998854
No 51
>3og7_A AKAP9-BRAF fusion protein; proto-oncogene, V600E, kinase, transferase; HET: 032; 2.45A {Homo sapiens} SCOP: d.144.1.7 PDB: 4fk3_A* 3c4c_A* 3c4d_A* 3idp_A* 4g9r_A* 3ii5_A* 4e26_A* 3ppj_A* 3ppk_A* 3prf_A* 3pri_A* 3psb_A* 3psd_A* 3q4c_A* 3skc_A* 3tv4_A* 3tv6_A* 3d4q_A* 4e4x_A* 4g9c_A* ...
Probab=100.00 E-value=5.6e-42 Score=351.70 Aligned_cols=260 Identities=25% Similarity=0.435 Sum_probs=197.9
Q ss_pred hccCCccccccccccEEEEEEEecCCCeEEEEEechhh--HHHHHHHHHHHHHHHhcCCCceeeEeeeeecCCeeEEEEE
Q 005040 426 TDEFNECNLLGTGGFGSVYKGTLSDGTNVAIKIFNLQL--ERAFRSFDSECEILRNVRHRNLLKILGSCSNLDFKALVLE 503 (717)
Q Consensus 426 ~~~~~~~~~lg~G~~g~V~~~~~~~~~~vavK~~~~~~--~~~~~~~~~e~~~l~~l~hpniv~~~~~~~~~~~~~lv~e 503 (717)
.++|++.+.||+|+||.||+|++. ..||+|+++... ....+.+.+|++++++++||||+++++++ .....++|||
T Consensus 23 ~~~y~~~~~lG~G~~g~Vy~~~~~--~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~-~~~~~~lv~e 99 (289)
T 3og7_A 23 DGQITVGQRIGSGSFGTVYKGKWH--GDVAVKMLNVTAPTPQQLQAFKNEVGVLRKTRHVNILLFMGYS-TAPQLAIVTQ 99 (289)
T ss_dssp TTSCEEEEEEEECSSEEEEEEESS--SEEEEEEESCSSCCHHHHHHHHHHHHHHTTCCCTTBCCEEEEE-CSSSCEEEEE
T ss_pred ccceeeeeEecCCCCeEEEEEEEc--CceEEEEEeccCCCHHHHHHHHHHHHHHHhCCCCcEEEEEeec-cCCccEEEEE
Confidence 478999999999999999999864 359999986443 44557789999999999999999999965 4556799999
Q ss_pred ccCCCCHHHHHhhCCCCCCHHHHHHHHHHHHHHHHHHhhcCCCCCeEecCCCCCCeeeCCCCcEEEeeeccccccCCCCC
Q 005040 504 FMPNGSLEKWLYSHNYFLDILQRLNIMIDVGSALEYLHHCHSSAPIIHCDLKPTNILLDENMVAHVSDFGISKLLGEGED 583 (717)
Q Consensus 504 ~~~~g~L~~~l~~~~~~~~~~~~~~i~~~i~~~l~~LH~~~~~~~ivH~dlk~~Nill~~~~~~kl~Dfgl~~~~~~~~~ 583 (717)
|+++++|.+++......+++..+..++.|++.||.||| +.+|+||||||+||+++.++.+||+|||++........
T Consensus 100 ~~~~~~L~~~l~~~~~~~~~~~~~~i~~qi~~~L~~lH----~~~i~H~Dlkp~Nil~~~~~~~kl~Dfg~~~~~~~~~~ 175 (289)
T 3og7_A 100 WCEGSSLYHHLHASETKFEMKKLIDIARQTARGMDYLH----AKSIIHRDLKSNNIFLHEDNTVKIGDFGLATEKSRWSG 175 (289)
T ss_dssp CCCEEEHHHHHTTC---CCHHHHHHHHHHHHHHHHHHH----HTTCCCSCCCGGGEEEETTTEEEECCCC----------
T ss_pred ecCCCcHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHH----hCCcccccCccceEEECCCCCEEEccceeccccccccc
Confidence 99999999999877777999999999999999999999 67899999999999999999999999999986654333
Q ss_pred ceeeeccccCccccCCCccC---CCCcCcccchhhHHHHHHHHHhCCCCCCccccCcchHHHHHHhh-CCCchhhhcccc
Q 005040 584 SVIQTMTMATIGYMAPEYGS---EGIVSTKCDVYSYGVLLMETFTEKKPTDEMFTGEMSLRRWVKES-LPHRLTEVVDAN 659 (717)
Q Consensus 584 ~~~~~~~~~t~~y~aPE~~~---~~~~~~~~Dvws~G~il~el~tg~~p~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~ 659 (717)
........||+.|+|||.+. +..++.++||||+|+++|||++|+.||....... .....+... .......
T Consensus 176 ~~~~~~~~gt~~y~aPE~~~~~~~~~~~~~~Di~slG~il~el~~g~~p~~~~~~~~-~~~~~~~~~~~~~~~~~----- 249 (289)
T 3og7_A 176 SHQFEQLSGSILWMAPEVIRMQDSNPYSFQSDVYAFGIVLYELMTGQLPYSNINNRD-QIIEMVGRGSLSPDLSK----- 249 (289)
T ss_dssp --------CCCTTCCHHHHC----CCSCHHHHHHHHHHHHHHHHHSSCTTSSCCCHH-HHHHHHHHTSCCCCTTS-----
T ss_pred cccccccCCCccccCchhhcccCCCCCCcccchHHHHHHHHHHHHCCCCccccchHH-HHHHHhcccccCcchhh-----
Confidence 33334456899999999876 6678899999999999999999999997643221 222222211 1111110
Q ss_pred chhhhhhhhhhHHHHHHHHHHHhhccCCCCCCCCCHHHHHHHHHHhHH
Q 005040 660 LVREEQAFSDKMDCLFSIMDLALDCCMDTPHKRIHMTDAAAKLRKIKA 707 (717)
Q Consensus 660 ~~~~~~~~~~~~~~~~~l~~li~~cl~~~P~~Rpt~~ev~~~L~~~~~ 707 (717)
....++.++.+++.+||+.||++|||+.|+++.|+++.+
T Consensus 250 ---------~~~~~~~~l~~li~~~l~~~p~~Rps~~ell~~L~~l~~ 288 (289)
T 3og7_A 250 ---------VRSNCPKRMKRLMAECLKKKRDERPSFPRILAEIEELAR 288 (289)
T ss_dssp ---------SCTTSCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHTTC
T ss_pred ---------ccccCCHHHHHHHHHHccCChhhCCCHHHHHHHHHHHhh
Confidence 011345678899999999999999999999999998754
No 52
>4eqm_A Protein kinase; transferase; HET: ANP; 3.00A {Staphylococcus aureus subsp}
Probab=100.00 E-value=1e-41 Score=350.43 Aligned_cols=261 Identities=23% Similarity=0.373 Sum_probs=207.2
Q ss_pred hccCCccccccccccEEEEEEEec-CCCeEEEEEechhh---HHHHHHHHHHHHHHHhcCCCceeeEeeeeecCCeeEEE
Q 005040 426 TDEFNECNLLGTGGFGSVYKGTLS-DGTNVAIKIFNLQL---ERAFRSFDSECEILRNVRHRNLLKILGSCSNLDFKALV 501 (717)
Q Consensus 426 ~~~~~~~~~lg~G~~g~V~~~~~~-~~~~vavK~~~~~~---~~~~~~~~~e~~~l~~l~hpniv~~~~~~~~~~~~~lv 501 (717)
.++|++.+.||+|+||.||+|... +++.||+|++.... ....+.+.+|+.++++++||||+++++++.+.+..++|
T Consensus 10 ~~~y~i~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~~e~~~l~~l~hp~iv~~~~~~~~~~~~~lv 89 (294)
T 4eqm_A 10 NERYKIVDKLGGGGMSTVYLAEDTILNIKVAIKAIFIPPREKEETLKRFEREVHNSSQLSHQNIVSMIDVDEEDDCYYLV 89 (294)
T ss_dssp ETTEEEEEEEEEETTEEEEEEEETTTCSEEEEEEEECCSSCCHHHHHHHHHHHHHHTTCCBTTBCCEEEEEECSSEEEEE
T ss_pred hccEEEEEEEccCCCEEEEEEEECCCCCeEEEEEeccCccccHHHHHHHHHHHHHHhcCCCCCCceEEEeeeeCCeEEEE
Confidence 368999999999999999999965 78999999885332 34457789999999999999999999999999999999
Q ss_pred EEccCCCCHHHHHhhCCCCCCHHHHHHHHHHHHHHHHHHhhcCCCCCeEecCCCCCCeeeCCCCcEEEeeeccccccCCC
Q 005040 502 LEFMPNGSLEKWLYSHNYFLDILQRLNIMIDVGSALEYLHHCHSSAPIIHCDLKPTNILLDENMVAHVSDFGISKLLGEG 581 (717)
Q Consensus 502 ~e~~~~g~L~~~l~~~~~~~~~~~~~~i~~~i~~~l~~LH~~~~~~~ivH~dlk~~Nill~~~~~~kl~Dfgl~~~~~~~ 581 (717)
|||+++++|.+++...+ .+++..+..++.|++.||+||| +.+|+||||||+||+++.++.+||+|||++......
T Consensus 90 ~e~~~g~~L~~~l~~~~-~~~~~~~~~~~~qi~~~l~~lH----~~~i~H~Dlkp~Nil~~~~~~~kl~Dfg~~~~~~~~ 164 (294)
T 4eqm_A 90 MEYIEGPTLSEYIESHG-PLSVDTAINFTNQILDGIKHAH----DMRIVHRDIKPQNILIDSNKTLKIFDFGIAKALSET 164 (294)
T ss_dssp EECCCSCBHHHHHHHHC-SCCHHHHHHHHHHHHHHHHHHH----HTTCCCCCCCGGGEEECTTSCEEECCCSSSTTC---
T ss_pred EeCCCCCCHHHHHHhcC-CCCHHHHHHHHHHHHHHHHHHH----HCCcccCCCCHHHEEECCCCCEEEEeCCCccccccc
Confidence 99999999999998754 4899999999999999999999 678999999999999999999999999999876433
Q ss_pred CCceeeeccccCccccCCCccCCCCcCcccchhhHHHHHHHHHhCCCCCCccccCcchHHHHHHhhCCCchhhhccccch
Q 005040 582 EDSVIQTMTMATIGYMAPEYGSEGIVSTKCDVYSYGVLLMETFTEKKPTDEMFTGEMSLRRWVKESLPHRLTEVVDANLV 661 (717)
Q Consensus 582 ~~~~~~~~~~~t~~y~aPE~~~~~~~~~~~Dvws~G~il~el~tg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 661 (717)
.. .......||+.|+|||.+.+..++.++||||+|+++|||++|+.||....... ..... ....... ..
T Consensus 165 ~~-~~~~~~~gt~~y~aPE~~~~~~~~~~~Di~slG~~l~~ll~g~~pf~~~~~~~----~~~~~-~~~~~~~-----~~ 233 (294)
T 4eqm_A 165 SL-TQTNHVLGTVQYFSPEQAKGEATDECTDIYSIGIVLYEMLVGEPPFNGETAVS----IAIKH-IQDSVPN-----VT 233 (294)
T ss_dssp -----------CCSSCCHHHHHTCCCCTTHHHHHHHHHHHHHHHSSCSSCSSCHHH----HHHHH-HSSCCCC-----HH
T ss_pred cc-cccCccccCccccCHhHhcCCCCCchHhHHHHHHHHHHHHhCCCCCCCCChHH----HHHHH-hhccCCC-----cc
Confidence 21 12234568999999999999999999999999999999999999997632211 11111 0000000 00
Q ss_pred hhhhhhhhhHHHHHHHHHHHhhccCCCCCCCC-CHHHHHHHHHHhHH
Q 005040 662 REEQAFSDKMDCLFSIMDLALDCCMDTPHKRI-HMTDAAAKLRKIKA 707 (717)
Q Consensus 662 ~~~~~~~~~~~~~~~l~~li~~cl~~~P~~Rp-t~~ev~~~L~~~~~ 707 (717)
.....+++..+.+++.+|++.||++|| +++++.+.|+++..
T Consensus 234 -----~~~~~~~~~~l~~li~~~l~~dp~~R~~~~~~l~~~l~~~~~ 275 (294)
T 4eqm_A 234 -----TDVRKDIPQSLSNVILRATEKDKANRYKTIQEMKDDLSSVLH 275 (294)
T ss_dssp -----HHSCTTSCHHHHHHHHHHSCSSGGGSCSSHHHHHHHHHTSSS
T ss_pred -----hhcccCCCHHHHHHHHHHhcCCHhHccccHHHHHHHHHHHHh
Confidence 001123456788999999999999999 89999999998754
No 53
>2yab_A Death-associated protein kinase 2; apoptosis, transferase; HET: AMP; 1.90A {Mus musculus} PDB: 2yaa_A* 2ya9_A*
Probab=100.00 E-value=2.5e-41 Score=356.23 Aligned_cols=251 Identities=22% Similarity=0.282 Sum_probs=205.6
Q ss_pred hccCCccccccccccEEEEEEEec-CCCeEEEEEechhhHH------HHHHHHHHHHHHHhcCCCceeeEeeeeecCCee
Q 005040 426 TDEFNECNLLGTGGFGSVYKGTLS-DGTNVAIKIFNLQLER------AFRSFDSECEILRNVRHRNLLKILGSCSNLDFK 498 (717)
Q Consensus 426 ~~~~~~~~~lg~G~~g~V~~~~~~-~~~~vavK~~~~~~~~------~~~~~~~e~~~l~~l~hpniv~~~~~~~~~~~~ 498 (717)
.++|++.+.||+|+||.||+|..+ +|+.||+|++...... ..+.+.+|+.++++++||||+++++++.+....
T Consensus 11 ~~~y~~~~~LG~G~fg~V~~~~~~~~~~~~avK~i~~~~~~~~~~~~~~~~~~~E~~il~~l~hpnIv~l~~~~~~~~~~ 90 (361)
T 2yab_A 11 EDFYDIGEELGSGQFAIVKKCREKSTGLEYAAKFIKKRQSRASRRGVCREEIEREVSILRQVLHPNIITLHDVYENRTDV 90 (361)
T ss_dssp GGTEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEEBCSSTTCSSSBCHHHHHHHHHHHTTCCCTTBCCEEEEEECSSEE
T ss_pred hhceEEeeEEeeCcCEEEEEEEECCCCCEEEEEEEEccccccccchhHHHHHHHHHHHHHhCCCcCCCcEEEEEEeCCEE
Confidence 468999999999999999999976 7999999999754321 246788999999999999999999999999999
Q ss_pred EEEEEccCCCCHHHHHhhCCCCCCHHHHHHHHHHHHHHHHHHhhcCCCCCeEecCCCCCCeeeCCCC----cEEEeeecc
Q 005040 499 ALVLEFMPNGSLEKWLYSHNYFLDILQRLNIMIDVGSALEYLHHCHSSAPIIHCDLKPTNILLDENM----VAHVSDFGI 574 (717)
Q Consensus 499 ~lv~e~~~~g~L~~~l~~~~~~~~~~~~~~i~~~i~~~l~~LH~~~~~~~ivH~dlk~~Nill~~~~----~~kl~Dfgl 574 (717)
++||||+++|+|.+++.... .+++..+..++.|++.||.||| +.+|+||||||+||+++.++ .+||+|||+
T Consensus 91 ~lv~e~~~gg~L~~~l~~~~-~l~~~~~~~i~~qi~~aL~~LH----~~givHrDlkp~NIll~~~~~~~~~vkl~DFG~ 165 (361)
T 2yab_A 91 VLILELVSGGELFDFLAQKE-SLSEEEATSFIKQILDGVNYLH----TKKIAHFDLKPENIMLLDKNIPIPHIKLIDFGL 165 (361)
T ss_dssp EEEEECCCSCBHHHHHTTCS-CCBHHHHHHHHHHHHHHHHHHH----HTTEECCCCSGGGEEESCTTSSSCCEEECCCSS
T ss_pred EEEEEcCCCCcHHHHHHhcC-CCCHHHHHHHHHHHHHHHHHHH----HCCcccCCCCHHHEEEeCCCCCccCEEEEecCC
Confidence 99999999999999997654 4899999999999999999999 67899999999999998877 799999999
Q ss_pred ccccCCCCCceeeeccccCccccCCCccCCCCcCcccchhhHHHHHHHHHhCCCCCCccccCcchHHHHHHhhCCCchhh
Q 005040 575 SKLLGEGEDSVIQTMTMATIGYMAPEYGSEGIVSTKCDVYSYGVLLMETFTEKKPTDEMFTGEMSLRRWVKESLPHRLTE 654 (717)
Q Consensus 575 ~~~~~~~~~~~~~~~~~~t~~y~aPE~~~~~~~~~~~Dvws~G~il~el~tg~~p~~~~~~~~~~~~~~~~~~~~~~~~~ 654 (717)
+........ .....||+.|+|||++.+..++.++||||+||++|+|++|+.||.+.... .....+....
T Consensus 166 a~~~~~~~~---~~~~~gt~~y~aPE~~~~~~~~~~~DiwslGvil~~ll~g~~Pf~~~~~~--~~~~~i~~~~------ 234 (361)
T 2yab_A 166 AHEIEDGVE---FKNIFGTPEFVAPEIVNYEPLGLEADMWSIGVITYILLSGASPFLGDTKQ--ETLANITAVS------ 234 (361)
T ss_dssp CEECCTTCC---CCCCCSCGGGCCHHHHTTCCCCTHHHHHHHHHHHHHHHHSCCSSCCSSHH--HHHHHHHTTC------
T ss_pred ceEcCCCCc---cccCCCCccEECchHHcCCCCCccccHHHHHHHHHHHHhCCCCCCCCCHH--HHHHHHHhcC------
Confidence 987654322 23456999999999999999999999999999999999999999763211 1111111100
Q ss_pred hccccchhhhhhhhhhHHHHHHHHHHHhhccCCCCCCCCCHHHHHH
Q 005040 655 VVDANLVREEQAFSDKMDCLFSIMDLALDCCMDTPHKRIHMTDAAA 700 (717)
Q Consensus 655 ~~~~~~~~~~~~~~~~~~~~~~l~~li~~cl~~~P~~Rpt~~ev~~ 700 (717)
..+.. .....++.++.++|.+||..||++|||+.|+++
T Consensus 235 ---~~~~~-----~~~~~~s~~~~~li~~~L~~dP~~R~t~~e~l~ 272 (361)
T 2yab_A 235 ---YDFDE-----EFFSQTSELAKDFIRKLLVKETRKRLTIQEALR 272 (361)
T ss_dssp ---CCCCH-----HHHTTSCHHHHHHHHHHSCSSTTTSCCHHHHHT
T ss_pred ---CCCCc-----hhccCCCHHHHHHHHHHCCCChhHCcCHHHHhc
Confidence 00000 011234566889999999999999999999885
No 54
>3l9p_A Anaplastic lymphoma kinase; kinase domain, ATP-binding, glycoprotein, membrane, nucleotide-binding, phosphoprotein, proto-oncogene; 1.80A {Homo sapiens}
Probab=100.00 E-value=4e-42 Score=364.60 Aligned_cols=260 Identities=25% Similarity=0.375 Sum_probs=210.3
Q ss_pred hccCCccccccccccEEEEEEEec------CCCeEEEEEechhh-HHHHHHHHHHHHHHHhcCCCceeeEeeeeecCCee
Q 005040 426 TDEFNECNLLGTGGFGSVYKGTLS------DGTNVAIKIFNLQL-ERAFRSFDSECEILRNVRHRNLLKILGSCSNLDFK 498 (717)
Q Consensus 426 ~~~~~~~~~lg~G~~g~V~~~~~~------~~~~vavK~~~~~~-~~~~~~~~~e~~~l~~l~hpniv~~~~~~~~~~~~ 498 (717)
.++|++.+.||+|+||.||+|.+. +++.||||++.... ......+.+|+.++++++||||+++++++.+....
T Consensus 70 ~~~~~~~~~LG~G~fg~Vy~~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~hpnIv~~~~~~~~~~~~ 149 (367)
T 3l9p_A 70 RKNITLIRGLGHGAFGEVYEGQVSGMPNDPSPLQVAVKTLPEVCSEQDELDFLMEALIISKFNHQNIVRCIGVSLQSLPR 149 (367)
T ss_dssp GGGEEEEEECCCCSSSCEEEEEECC-----CCEEEEEEECCSSCCHHHHHHHHHHHHHHHHCCCTTBCCEEEEECSSSSC
T ss_pred HhHeEEeeEeeeCCCEEEEEEEEccCCCCCcceeEEEEecccccChhhHHHHHHHHHHHHhCCCCCCCeEEEEEecCCCC
Confidence 368899999999999999999853 46789999986442 34446788899999999999999999999999999
Q ss_pred EEEEEccCCCCHHHHHhhCC------CCCCHHHHHHHHHHHHHHHHHHhhcCCCCCeEecCCCCCCeeeCCCC---cEEE
Q 005040 499 ALVLEFMPNGSLEKWLYSHN------YFLDILQRLNIMIDVGSALEYLHHCHSSAPIIHCDLKPTNILLDENM---VAHV 569 (717)
Q Consensus 499 ~lv~e~~~~g~L~~~l~~~~------~~~~~~~~~~i~~~i~~~l~~LH~~~~~~~ivH~dlk~~Nill~~~~---~~kl 569 (717)
++||||+++|+|.+++.... ..+++..++.++.|+++||+||| +.+|+||||||+|||++.++ .+||
T Consensus 150 ~lv~e~~~~g~L~~~l~~~~~~~~~~~~~~~~~~~~i~~qi~~aL~~LH----~~~ivHrDlkp~NIll~~~~~~~~~kL 225 (367)
T 3l9p_A 150 FILLELMAGGDLKSFLRETRPRPSQPSSLAMLDLLHVARDIACGCQYLE----ENHFIHRDIAARNCLLTCPGPGRVAKI 225 (367)
T ss_dssp EEEEECCTTEEHHHHHHHHSCCSSSCCCCCHHHHHHHHHHHHHHHHHHH----HTTCCCSCCCGGGEEESCSSTTCCEEE
T ss_pred EEEEEeCCCCCHHHHHHhhccccCccccccHHHHHHHHHHHHHHHHHHH----hCCeeCCCCChhhEEEecCCCCceEEE
Confidence 99999999999999998542 45899999999999999999999 67899999999999999555 5999
Q ss_pred eeeccccccCCCCCceeeeccccCccccCCCccCCCCcCcccchhhHHHHHHHHHh-CCCCCCccccCcchHHHHHHhhC
Q 005040 570 SDFGISKLLGEGEDSVIQTMTMATIGYMAPEYGSEGIVSTKCDVYSYGVLLMETFT-EKKPTDEMFTGEMSLRRWVKESL 648 (717)
Q Consensus 570 ~Dfgl~~~~~~~~~~~~~~~~~~t~~y~aPE~~~~~~~~~~~Dvws~G~il~el~t-g~~p~~~~~~~~~~~~~~~~~~~ 648 (717)
+|||+++...............+|+.|+|||++.+..++.++|||||||++|||++ |+.||..... ......+....
T Consensus 226 ~DFG~a~~~~~~~~~~~~~~~~~t~~y~aPE~~~~~~~~~~~DvwslG~il~ellt~g~~pf~~~~~--~~~~~~i~~~~ 303 (367)
T 3l9p_A 226 GDFGMARDIYRAGYYRKGGCAMLPVKWMPPEAFMEGIFTSKTDTWSFGVLLWEIFSLGYMPYPSKSN--QEVLEFVTSGG 303 (367)
T ss_dssp CCCHHHHHHHHHSSCTTCCGGGSCGGGCCHHHHHHCCCCHHHHHHHHHHHHHHHHTTSCCSSTTCCH--HHHHHHHHTTC
T ss_pred CCCccccccccccccccCCCcCCcccEECHHHhcCCCCCcHHHHHHHHHHHHHHHhCCCCCCCCCCH--HHHHHHHHcCC
Confidence 99999986533222222334567999999999988899999999999999999998 9999976321 11222221111
Q ss_pred CCchhhhccccchhhhhhhhhhHHHHHHHHHHHhhccCCCCCCCCCHHHHHHHHHHhHHh
Q 005040 649 PHRLTEVVDANLVREEQAFSDKMDCLFSIMDLALDCCMDTPHKRIHMTDAAAKLRKIKAK 708 (717)
Q Consensus 649 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~cl~~~P~~Rpt~~ev~~~L~~~~~~ 708 (717)
.. .....++..+.+++.+||+.||++|||+.|+++.|+.+.+.
T Consensus 304 ~~-----------------~~~~~~~~~l~~li~~~l~~dP~~Rps~~eil~~l~~~~~~ 346 (367)
T 3l9p_A 304 RM-----------------DPPKNCPGPVYRIMTQCWQHQPEDRPNFAIILERIEYCTQD 346 (367)
T ss_dssp CC-----------------CCCTTCCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHHHC
T ss_pred CC-----------------CCCccCCHHHHHHHHHHcCCCHhHCcCHHHHHHHHHHHhhC
Confidence 00 01123455688999999999999999999999999988653
No 55
>2ivs_A Proto-oncogene tyrosine-protein kinase receptor RET; nucleotide-binding, hirschsprung disease, phosphorylation, disease mutation; HET: ACK; 2.00A {Homo sapiens} PDB: 2ivt_A* 2ivu_A* 2x2k_A* 2x2l_A* 2x2m_A* 2ivv_A*
Probab=100.00 E-value=2.9e-41 Score=350.99 Aligned_cols=260 Identities=28% Similarity=0.419 Sum_probs=215.2
Q ss_pred hccCCccccccccccEEEEEEEe------cCCCeEEEEEechhh-HHHHHHHHHHHHHHHhcCCCceeeEeeeeecCCee
Q 005040 426 TDEFNECNLLGTGGFGSVYKGTL------SDGTNVAIKIFNLQL-ERAFRSFDSECEILRNVRHRNLLKILGSCSNLDFK 498 (717)
Q Consensus 426 ~~~~~~~~~lg~G~~g~V~~~~~------~~~~~vavK~~~~~~-~~~~~~~~~e~~~l~~l~hpniv~~~~~~~~~~~~ 498 (717)
.++|.+.+.||+|+||.||+|.. .+++.||+|++.... ....+.+.+|++++++++||||+++++++.+.+..
T Consensus 22 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~hp~iv~~~~~~~~~~~~ 101 (314)
T 2ivs_A 22 RKNLVLGKTLGEGEFGKVVKATAFHLKGRAGYTTVAVKMLKENASPSELRDLLSEFNVLKQVNHPHVIKLYGACSQDGPL 101 (314)
T ss_dssp GGGEEEEEEEEECSSSEEEEEEEETGGGCSSEEEEEEEECCTTCCHHHHHHHHHHHHHHTTCCCTTBCCEEEEECSSSSC
T ss_pred hhheeeeeeecccCCeeEEEEEEeccCcccCcceEEEEeccCCCCHHHHHHHHHHHHHHhhCCCCceeeEEEEEecCCce
Confidence 47899999999999999999986 245789999997543 34457788999999999999999999999999999
Q ss_pred EEEEEccCCCCHHHHHhhCC-----------------------CCCCHHHHHHHHHHHHHHHHHHhhcCCCCCeEecCCC
Q 005040 499 ALVLEFMPNGSLEKWLYSHN-----------------------YFLDILQRLNIMIDVGSALEYLHHCHSSAPIIHCDLK 555 (717)
Q Consensus 499 ~lv~e~~~~g~L~~~l~~~~-----------------------~~~~~~~~~~i~~~i~~~l~~LH~~~~~~~ivH~dlk 555 (717)
++||||+++|+|.+++.... ..+++..++.++.|+++||.||| +.+|+|||||
T Consensus 102 ~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~qi~~~l~~lH----~~~ivH~dik 177 (314)
T 2ivs_A 102 LLIVEYAKYGSLRGFLRESRKVGPGYLGSGGSRNSSSLDHPDERALTMGDLISFAWQISQGMQYLA----EMKLVHRDLA 177 (314)
T ss_dssp EEEEECCTTCBHHHHHHHTTTSTTEEC----------------CEECHHHHHHHHHHHHHHHHHHH----HTTEECCCCS
T ss_pred EEEEeecCCCCHHHHHHHHhhccCCcccccccccccccccccccCcCHHHHHHHHHHHHHHHHHHH----HCCCcccccc
Confidence 99999999999999998643 23789999999999999999999 6789999999
Q ss_pred CCCeeeCCCCcEEEeeeccccccCCCCCceeeeccccCccccCCCccCCCCcCcccchhhHHHHHHHHHh-CCCCCCccc
Q 005040 556 PTNILLDENMVAHVSDFGISKLLGEGEDSVIQTMTMATIGYMAPEYGSEGIVSTKCDVYSYGVLLMETFT-EKKPTDEMF 634 (717)
Q Consensus 556 ~~Nill~~~~~~kl~Dfgl~~~~~~~~~~~~~~~~~~t~~y~aPE~~~~~~~~~~~Dvws~G~il~el~t-g~~p~~~~~ 634 (717)
|+||+++.++.+||+|||++................+|+.|+|||...+..++.++||||+|+++|||++ |+.||....
T Consensus 178 p~NIli~~~~~~kl~Dfg~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~el~t~g~~p~~~~~ 257 (314)
T 2ivs_A 178 ARNILVAEGRKMKISDFGLSRDVYEEDSYVKRSQGRIPVKWMAIESLFDHIYTTQSDVWSFGVLLWEIVTLGGNPYPGIP 257 (314)
T ss_dssp GGGEEEETTTEEEECCCTTCEECTTTSCEECSSCCCSCGGGCCHHHHHHCEECHHHHHHHHHHHHHHHHTTSCCSSTTCC
T ss_pred hheEEEcCCCCEEEccccccccccccccceeccCCCCcccccChhhhcCCCcCchhhHHHHHHHHHHHHhCCCCCCCCCC
Confidence 9999999999999999999987755443333344567889999999988889999999999999999999 999997643
Q ss_pred cCcchHHHHHHhhCCCchhhhccccchhhhhhhhhhHHHHHHHHHHHhhccCCCCCCCCCHHHHHHHHHHhHHh
Q 005040 635 TGEMSLRRWVKESLPHRLTEVVDANLVREEQAFSDKMDCLFSIMDLALDCCMDTPHKRIHMTDAAAKLRKIKAK 708 (717)
Q Consensus 635 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~cl~~~P~~Rpt~~ev~~~L~~~~~~ 708 (717)
.. .....+...... .....++.++.+++.+||+.||++|||+.|+++.|+++..+
T Consensus 258 ~~--~~~~~~~~~~~~-----------------~~~~~~~~~~~~li~~~l~~dp~~Rps~~~l~~~l~~~~~~ 312 (314)
T 2ivs_A 258 PE--RLFNLLKTGHRM-----------------ERPDNCSEEMYRLMLQCWKQEPDKRPVFADISKDLEKMMVK 312 (314)
T ss_dssp GG--GHHHHHHTTCCC-----------------CCCTTCCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHHHT
T ss_pred HH--HHHHHhhcCCcC-----------------CCCccCCHHHHHHHHHHccCChhhCcCHHHHHHHHHHHHhh
Confidence 22 222222211100 01123456688999999999999999999999999998664
No 56
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=100.00 E-value=5.1e-41 Score=368.08 Aligned_cols=314 Identities=20% Similarity=0.282 Sum_probs=213.1
Q ss_pred CCCCCccccCCCCCcEEECCCCcceecCCcCCCCCCCCCEEEccccccc-CccCCcccccccccccCccCCcEEeccCCC
Q 005040 1 MGTIPNSITNATKLIGLDLGLNSFSGHIPNTFGNLRHLSVLSLMMNNLT-TESSSADQWSFLSSLTNCRNLANLALASNP 79 (717)
Q Consensus 1 ~~~iP~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~-~~~~~~~~~~~~~~l~~l~~L~~L~L~~N~ 79 (717)
+++||. +. ++|++|+|++|.|+++.|..|.++++|++|+|++|.+. .+++. .|.++++|++|+|++|+
T Consensus 22 l~~lp~-l~--~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~~~~~i~~~--------~~~~l~~L~~L~Ls~n~ 90 (455)
T 3v47_A 22 LHQVPE-LP--AHVNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNN--------TFRGLSSLIILKLDYNQ 90 (455)
T ss_dssp CSSCCC-CC--TTCCEEECCSSCCCEECTTTTSSCTTCCEEECCCCSTTCEECTT--------TTTTCTTCCEEECTTCT
T ss_pred cccCCC-CC--CccCEEEecCCccCcCChhHhccCccccEEECcCCcccceECcc--------cccccccCCEEeCCCCc
Confidence 457787 43 78999999999999999999999999999999999997 44433 38899999999999999
Q ss_pred CcccCCcchhccccccceeeecCCcceecCCcc--ccCCCCCcEEEccCCCCcccCCcc-ccccCCCCEEeccCCccccc
Q 005040 80 LGGILPPLIGNFSASLQNIYAFECKLGGSIPKE--IGNLRGLIVLSLGFNDLNGTIPTS-IGTLQQLQGFYVPENNLQGY 156 (717)
Q Consensus 80 l~~~~~~~~~~l~~~L~~L~l~~n~l~~~~~~~--~~~l~~L~~L~L~~n~l~~~~~~~-~~~l~~L~~L~l~~n~i~~~ 156 (717)
+++..|..|..+ ++|++|++++|++.+..+.. |.++++|++|+|++|.+++..|.. |.++++|++|++++|.+++.
T Consensus 91 l~~~~~~~~~~l-~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~ 169 (455)
T 3v47_A 91 FLQLETGAFNGL-ANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFNKVKSI 169 (455)
T ss_dssp TCEECTTTTTTC-TTCCEEECTTSCCBTHHHHSSTTTTCTTCCEEECCSSBCCSCCCCGGGGGCTTCCEEECTTCCBSCC
T ss_pred cCccChhhccCc-ccCCEEeCCCCCCCccccCcccccCcccCCEEECCCCccCccCcccccCCCCcccEEeCCCCccccc
Confidence 998889999988 68999999999998755554 999999999999999999887776 89999999999999999988
Q ss_pred CCccccCC----------------------------------CCCCEEeccCCcCcccCCccccCC--------------
Q 005040 157 VPHDLCHL----------------------------------ERLNILNLSGNKLSGAIPQCLASL-------------- 188 (717)
Q Consensus 157 ~~~~~~~l----------------------------------~~L~~L~L~~n~l~~~~~~~~~~l-------------- 188 (717)
.+..+..+ ++|++|+|++|++++..+..+...
T Consensus 170 ~~~~l~~l~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~L~~L~l~~~ 249 (455)
T 3v47_A 170 CEEDLLNFQGKHFTLLRLSSITLQDMNEYWLGWEKCGNPFKNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILSNS 249 (455)
T ss_dssp CTTTSGGGTTCEEEEEECTTCBCTTCSTTCTTHHHHCCTTTTCEEEEEECTTSCCCHHHHHHHHHHTTTCCEEEEECTTC
T ss_pred ChhhhhccccccccccccccCcccccchhhccccccccccccceeeeEecCCCcccccchhhhhccccccceeeEeeccc
Confidence 88777655 345555555555543333222111
Q ss_pred -------------------------CCCCeEEecCccccCCCChhhhcccCCCeEEccCCcCcccCCccccCCCCCCeEE
Q 005040 189 -------------------------TSLRSLYLQSNKLSSSLPSSLWSLEYILRINLSSNSLKGTLPSNIQKLNVLIDLD 243 (717)
Q Consensus 189 -------------------------~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~ 243 (717)
++|+.|++++|++++..|..+..+++|++|+|++|.+++..|..|.++++|+.|+
T Consensus 250 ~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~ 329 (455)
T 3v47_A 250 YNMGSSFGHTNFKDPDNFTFKGLEASGVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNEINKIDDNAFWGLTHLLKLN 329 (455)
T ss_dssp TTTSCCTTCCSSCCCCTTTTGGGTTSCCCEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEE
T ss_pred cccccccchhhhccCcccccccccccCceEEEecCccccccchhhcccCCCCCEEECCCCcccccChhHhcCcccCCEEE
Confidence 3444555555555444444455555555555555555544444555555555555
Q ss_pred ccCCCCCCCCcccccCCcccccccccCccccCCCCccccccCccceEeccCCCCCCCCcccccccccccEEEccCCcccc
Q 005040 244 LSRNQLSSDIPSTIGTLKNLETLSLAGNQFQGPIPESVGNLISLESLDFSNNNLSGKIPKSLEALSHLKQFNVSHNRLEG 323 (717)
Q Consensus 244 l~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~~~~~~~~~~l~~L~~L~l~~N~l~~ 323 (717)
|++|.+++..+..|..+++|++|+|++|++++..|..|.++++|++|+|++|++++..+..+..+++|+.|++++|++++
T Consensus 330 Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~ 409 (455)
T 3v47_A 330 LSQNFLGSIDSRMFENLDKLEVLDLSYNHIRALGDQSFLGLPNLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDC 409 (455)
T ss_dssp CCSSCCCEECGGGGTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCC
T ss_pred CCCCccCCcChhHhcCcccCCEEECCCCcccccChhhccccccccEEECCCCccccCCHhHhccCCcccEEEccCCCccc
Confidence 55555554444445555555555555555554444455555555555555555554444444455555555555555555
Q ss_pred ccc
Q 005040 324 EIP 326 (717)
Q Consensus 324 ~~p 326 (717)
.+|
T Consensus 410 ~~~ 412 (455)
T 3v47_A 410 SCP 412 (455)
T ss_dssp CTT
T ss_pred CCC
Confidence 444
No 57
>3op5_A Serine/threonine-protein kinase VRK1; adenosine triphosphate, amino acid sequence, binding sites, domain, models, molecular; HET: REB; 2.40A {Homo sapiens} PDB: 2lav_A 2kty_A 2kul_A
Probab=100.00 E-value=6.5e-42 Score=363.19 Aligned_cols=272 Identities=14% Similarity=0.149 Sum_probs=211.6
Q ss_pred HhccCCccccccccccEEEEEEEecC------CCeEEEEEechhhHHH-----------HHHHHHHHHHHHhcCCCceee
Q 005040 425 ATDEFNECNLLGTGGFGSVYKGTLSD------GTNVAIKIFNLQLERA-----------FRSFDSECEILRNVRHRNLLK 487 (717)
Q Consensus 425 ~~~~~~~~~~lg~G~~g~V~~~~~~~------~~~vavK~~~~~~~~~-----------~~~~~~e~~~l~~l~hpniv~ 487 (717)
..++|++.+.||+|+||.||+|.+.+ ++.||||++....... ...+..|+..++.++||||++
T Consensus 33 ~~~~y~~~~~lG~G~~g~Vy~~~~~~~~~~~~~~~vavK~~~~~~~~~~~e~~~~~~~~~~~~~~e~~~~~~l~h~~iv~ 112 (364)
T 3op5_A 33 AAAAWKVGLPIGQGGFGCIYLADMNSSESVGSDAPCVVKVEPSDNGPLFTELKFYQRAAKPEQIQKWIRTRKLKYLGVPK 112 (364)
T ss_dssp TCCEEEEEEECCCC-CCEEEEEEECCSSCCCTTCSEEEEEEETTCHHHHHHHHHHHHHCCHHHHHHHHHHTTCSCCCSCC
T ss_pred CCCeEEEEEEEecCCCeEEEEeeecCccccccccceEEEEeeccchhHHHHHHHHHhhhhhHHHHHHHHHhhccCCCCCe
Confidence 34689999999999999999998754 4789999986543211 122445666778889999999
Q ss_pred EeeeeecC----CeeEEEEEccCCCCHHHHHhhCCCCCCHHHHHHHHHHHHHHHHHHhhcCCCCCeEecCCCCCCeeeC-
Q 005040 488 ILGSCSNL----DFKALVLEFMPNGSLEKWLYSHNYFLDILQRLNIMIDVGSALEYLHHCHSSAPIIHCDLKPTNILLD- 562 (717)
Q Consensus 488 ~~~~~~~~----~~~~lv~e~~~~g~L~~~l~~~~~~~~~~~~~~i~~~i~~~l~~LH~~~~~~~ivH~dlk~~Nill~- 562 (717)
+++++... ...++||||+ +++|.+++......+++..+..++.|++.||+||| +.+|+||||||+|||++
T Consensus 113 ~~~~~~~~~~~~~~~~lv~e~~-g~~L~~~~~~~~~~l~~~~~~~i~~qi~~~l~~lH----~~~iiHrDlkp~Nill~~ 187 (364)
T 3op5_A 113 YWGSGLHDKNGKSYRFMIMDRF-GSDLQKIYEANAKRFSRKTVLQLSLRILDILEYIH----EHEYVHGDIKASNLLLNY 187 (364)
T ss_dssp EEEEEEEEETTEEEEEEEEECE-EEEHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHHH----HTTEECCCCCGGGEEEES
T ss_pred EEeeeeeccCCcceEEEEEeCC-CCCHHHHHHhccCCCCHHHHHHHHHHHHHHHHHHH----HCCeEEecCCHHHEEEec
Confidence 99998664 4579999999 99999999987677999999999999999999999 67999999999999999
Q ss_pred -CCCcEEEeeeccccccCCCCCc-----eeeeccccCccccCCCccCCCCcCcccchhhHHHHHHHHHhCCCCCCccccC
Q 005040 563 -ENMVAHVSDFGISKLLGEGEDS-----VIQTMTMATIGYMAPEYGSEGIVSTKCDVYSYGVLLMETFTEKKPTDEMFTG 636 (717)
Q Consensus 563 -~~~~~kl~Dfgl~~~~~~~~~~-----~~~~~~~~t~~y~aPE~~~~~~~~~~~Dvws~G~il~el~tg~~p~~~~~~~ 636 (717)
.++.+||+|||+++.+...... .......||+.|+|||++.+..++.++|||||||++|||++|+.||.+....
T Consensus 188 ~~~~~~kl~DFG~a~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Di~slG~~l~el~~g~~Pf~~~~~~ 267 (364)
T 3op5_A 188 KNPDQVYLVDYGLAYRYCPEGVHKAYAADPKRCHDGTIEFTSIDAHNGVAPSRRGDLEILGYCMIQWLTGHLPWEDNLKD 267 (364)
T ss_dssp SCTTCEEECCCTTCEESSGGGCCCCSSCCSSCCCCCCTTTCCHHHHTTCCCCHHHHHHHHHHHHHHHHHSCCTTGGGTTC
T ss_pred CCCCeEEEEECCcceecccCCcccccccCcccccCCCCCccCHHHhCCCCCCchhhHHHHHHHHHHHHhCCCCccccccC
Confidence 8999999999999876432211 1113345999999999999999999999999999999999999999863322
Q ss_pred cchHHHHHHhhCCCchhhhccccchhhhhhhhhhHHHHHHHHHHHhhccCCCCCCCCCHHHHHHHHHHhHHhhc
Q 005040 637 EMSLRRWVKESLPHRLTEVVDANLVREEQAFSDKMDCLFSIMDLALDCCMDTPHKRIHMTDAAAKLRKIKAKFL 710 (717)
Q Consensus 637 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~cl~~~P~~Rpt~~ev~~~L~~~~~~~~ 710 (717)
.....+........+.+..+..+. ...++.++.+++..||+.||++||++.++++.|+++.....
T Consensus 268 -~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~li~~cl~~~p~~RP~~~~l~~~l~~~~~~~~ 332 (364)
T 3op5_A 268 -PKYVRDSKIRYRENIASLMDKCFP--------AANAPGEIAKYMETVKLLDYTEKPLYENLRDILLQGLKAIG 332 (364)
T ss_dssp -HHHHHHHHHHHHHCHHHHHHHHSC--------TTCCCHHHHHHHHHHHTCCTTCCCCHHHHHHHHHHHHHHTT
T ss_pred -HHHHHHHHHHhhhhHHHHHHHhcc--------cccCHHHHHHHHHHHhcCCCCCCCCHHHHHHHHHHHHHHcC
Confidence 222222222222222233222221 12346678999999999999999999999999999877543
No 58
>1rjb_A FL cytokine receptor; kinase, structure, autoinhibition, juxtamembrane domain, transferase; 2.10A {Homo sapiens} SCOP: d.144.1.7
Probab=100.00 E-value=2.2e-41 Score=356.55 Aligned_cols=266 Identities=23% Similarity=0.376 Sum_probs=212.4
Q ss_pred HhccCCccccccccccEEEEEEEe------cCCCeEEEEEechhh-HHHHHHHHHHHHHHHhc-CCCceeeEeeeeecCC
Q 005040 425 ATDEFNECNLLGTGGFGSVYKGTL------SDGTNVAIKIFNLQL-ERAFRSFDSECEILRNV-RHRNLLKILGSCSNLD 496 (717)
Q Consensus 425 ~~~~~~~~~~lg~G~~g~V~~~~~------~~~~~vavK~~~~~~-~~~~~~~~~e~~~l~~l-~hpniv~~~~~~~~~~ 496 (717)
..++|++.+.||+|+||.||+|.+ .+++.||+|++.... ....+.+.+|+++++++ +||||+++++++.+.+
T Consensus 43 ~~~~y~~~~~lG~G~~g~V~~~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~~hp~iv~~~~~~~~~~ 122 (344)
T 1rjb_A 43 PRENLEFGKVLGSGAFGKVMNATAYGISKTGVSIQVAVKMLKEKADSSEREALMSELKMMTQLGSHENIVNLLGACTLSG 122 (344)
T ss_dssp CGGGEEEEEEEEECSSEEEEEEEEESCSSSSCEEEEEEEEECC------CHHHHHHHHHHHHHCCCTTBCCEEEEECSSS
T ss_pred CHHHceeeeeecCCCCceeEEeeeeccccCCcceEEEEEecccccCHHHHHHHHHHHHHHHhhcCCCCeeeEEEEEeeCC
Confidence 357899999999999999999986 245679999997543 33446788999999999 8999999999999999
Q ss_pred eeEEEEEccCCCCHHHHHhhCCC----------------------CCCHHHHHHHHHHHHHHHHHHhhcCCCCCeEecCC
Q 005040 497 FKALVLEFMPNGSLEKWLYSHNY----------------------FLDILQRLNIMIDVGSALEYLHHCHSSAPIIHCDL 554 (717)
Q Consensus 497 ~~~lv~e~~~~g~L~~~l~~~~~----------------------~~~~~~~~~i~~~i~~~l~~LH~~~~~~~ivH~dl 554 (717)
..++||||+++|+|.+++..... .+++..+..++.|++.||.||| +.+|+||||
T Consensus 123 ~~~lv~e~~~~g~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~~qi~~aL~~LH----~~~ivH~Di 198 (344)
T 1rjb_A 123 PIYLIFEYCCYGDLLNYLRSKREKFSEDEIEYENQKRLEEEEDLNVLTFEDLLCFAYQVAKGMEFLE----FKSCVHRDL 198 (344)
T ss_dssp SCEEEEECCTTCBHHHHHHTTTTCC---------------------CCHHHHHHHHHHHHHHHHHHH----HTTEEETTC
T ss_pred ccEEEEecCCCCcHHHHHhhccccccccccchhhhcccccccccccCCHHHHHHHHHHHHHHHHHHH----hCCcccCCC
Confidence 99999999999999999986532 3789999999999999999999 679999999
Q ss_pred CCCCeeeCCCCcEEEeeeccccccCCCCCceeeeccccCccccCCCccCCCCcCcccchhhHHHHHHHHHh-CCCCCCcc
Q 005040 555 KPTNILLDENMVAHVSDFGISKLLGEGEDSVIQTMTMATIGYMAPEYGSEGIVSTKCDVYSYGVLLMETFT-EKKPTDEM 633 (717)
Q Consensus 555 k~~Nill~~~~~~kl~Dfgl~~~~~~~~~~~~~~~~~~t~~y~aPE~~~~~~~~~~~Dvws~G~il~el~t-g~~p~~~~ 633 (717)
||+||+++.++.+||+|||++................+|+.|+|||.+.+..++.++||||||+++|||+| |+.||...
T Consensus 199 kp~NIll~~~~~~kL~Dfg~~~~~~~~~~~~~~~~~~~t~~y~aPE~~~~~~~~~~~Di~slG~il~el~t~g~~p~~~~ 278 (344)
T 1rjb_A 199 AARNVLVTHGKVVKICDFGLARDIMSDSNYVVRGNARLPVKWMAPESLFEGIYTIKSDVWSYGILLWEIFSLGVNPYPGI 278 (344)
T ss_dssp SGGGEEEETTTEEEECCCGGGSCGGGCTTSEEETTEEECGGGCCHHHHHHCCCCHHHHHHHHHHHHHHHTTTSCCSSTTC
T ss_pred ChhhEEEcCCCcEEeCCCccCcccccCccceeccCccCccCccCHHHhccCCCChhHhHHHHHHHHHHHHcCCCCCcccC
Confidence 99999999999999999999987755444444445567889999999988899999999999999999998 99999764
Q ss_pred ccCcchHHHHHHhhCCCchhhhccccchhhhhhhhhhHHHHHHHHHHHhhccCCCCCCCCCHHHHHHHHHHhHHhhccc
Q 005040 634 FTGEMSLRRWVKESLPHRLTEVVDANLVREEQAFSDKMDCLFSIMDLALDCCMDTPHKRIHMTDAAAKLRKIKAKFLDD 712 (717)
Q Consensus 634 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~cl~~~P~~Rpt~~ev~~~L~~~~~~~~~~ 712 (717)
... ............. ..+..++.++.+++.+||+.||++|||+.|+++.|+.+.+....+
T Consensus 279 ~~~-~~~~~~~~~~~~~-----------------~~~~~~~~~l~~li~~~l~~dp~~Rps~~~l~~~l~~~~~~~~~~ 339 (344)
T 1rjb_A 279 PVD-ANFYKLIQNGFKM-----------------DQPFYATEEIYIIMQSCWAFDSRKRPSFPNLTSFLGCQLADAEEA 339 (344)
T ss_dssp CCS-HHHHHHHHTTCCC-----------------CCCTTCCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHC------
T ss_pred CcH-HHHHHHHhcCCCC-----------------CCCCCCCHHHHHHHHHHcCCCchhCcCHHHHHHHHHHHHHHHHHH
Confidence 322 1222222211110 011123466889999999999999999999999999987765544
No 59
>3soa_A Calcium/calmodulin-dependent protein kinase type alpha with A beta 7 linker; phosphorylation, cytosolic, transferase-transferase inhibitor complex; HET: DB8; 3.55A {Homo sapiens}
Probab=100.00 E-value=5.3e-41 Score=363.01 Aligned_cols=254 Identities=21% Similarity=0.281 Sum_probs=206.0
Q ss_pred HHhccCCccccccccccEEEEEEEec-CCCeEEEEEechhh--HHHHHHHHHHHHHHHhcCCCceeeEeeeeecCCeeEE
Q 005040 424 RATDEFNECNLLGTGGFGSVYKGTLS-DGTNVAIKIFNLQL--ERAFRSFDSECEILRNVRHRNLLKILGSCSNLDFKAL 500 (717)
Q Consensus 424 ~~~~~~~~~~~lg~G~~g~V~~~~~~-~~~~vavK~~~~~~--~~~~~~~~~e~~~l~~l~hpniv~~~~~~~~~~~~~l 500 (717)
...++|++.+.||+|+||.||+|... +|+.||+|++.... ....+.+.+|+++++.++||||+++++++.+.+..|+
T Consensus 8 ~~~~~Y~i~~~LG~G~fg~V~~~~~~~~~~~~a~K~i~~~~~~~~~~~~~~~E~~il~~l~hpnIv~l~~~~~~~~~~~l 87 (444)
T 3soa_A 8 RFTEEYQLFEELGKGAFSVVRRCVKVLAGQEYAAMIINTKKLSARDHQKLEREARICRLLKHPNIVRLHDSISEEGHHYL 87 (444)
T ss_dssp HHHHHEEEEEEEEEC--CEEEEEEETTTTEEEEEEEEESCSCHHHHHHHHHHHHHHHHHCCBTTBCCEEEEEECSSEEEE
T ss_pred cccCCeEEEEEeccCCCeEEEEEEECCCCcEEEEEEEEcccCCHHHHHHHHHHHHHHHhCCCcCCCeEEEEEEECCEEEE
Confidence 44678999999999999999999865 78999999986543 3345678899999999999999999999999999999
Q ss_pred EEEccCCCCHHHHHhhCCCCCCHHHHHHHHHHHHHHHHHHhhcCCCCCeEecCCCCCCeeeC---CCCcEEEeeeccccc
Q 005040 501 VLEFMPNGSLEKWLYSHNYFLDILQRLNIMIDVGSALEYLHHCHSSAPIIHCDLKPTNILLD---ENMVAHVSDFGISKL 577 (717)
Q Consensus 501 v~e~~~~g~L~~~l~~~~~~~~~~~~~~i~~~i~~~l~~LH~~~~~~~ivH~dlk~~Nill~---~~~~~kl~Dfgl~~~ 577 (717)
||||+++|+|.+++.... .+++..+..++.|++.||.||| +.+|+||||||+||+++ .++.+||+|||++..
T Consensus 88 v~E~~~gg~L~~~i~~~~-~~~e~~~~~i~~qil~aL~~lH----~~givHrDlKp~NIll~~~~~~~~vkL~DFG~a~~ 162 (444)
T 3soa_A 88 IFDLVTGGELFEDIVARE-YYSEADASHCIQQILEAVLHCH----QMGVVHRNLKPENLLLASKLKGAAVKLADFGLAIE 162 (444)
T ss_dssp EECCCBCCBHHHHHHHCS-CCCHHHHHHHHHHHHHHHHHHH----HTTCBCCCCSSTTEEESBSSTTCCEEECCCSSCBC
T ss_pred EEEeCCCCCHHHHHHHcC-CCCHHHHHHHHHHHHHHHHHHH----HCCccccCCCHHHEEEeccCCCCcEEEccCceeEE
Confidence 999999999999998764 4899999999999999999999 67899999999999998 567899999999987
Q ss_pred cCCCCCceeeeccccCccccCCCccCCCCcCcccchhhHHHHHHHHHhCCCCCCccccCcchHHHHHHhhCCCchhhhcc
Q 005040 578 LGEGEDSVIQTMTMATIGYMAPEYGSEGIVSTKCDVYSYGVLLMETFTEKKPTDEMFTGEMSLRRWVKESLPHRLTEVVD 657 (717)
Q Consensus 578 ~~~~~~~~~~~~~~~t~~y~aPE~~~~~~~~~~~Dvws~G~il~el~tg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 657 (717)
...... ......||+.|+|||++.+..++.++||||+||++|+|++|+.||.+... ......+.......
T Consensus 163 ~~~~~~--~~~~~~gt~~Y~APE~l~~~~~~~~~DIwSlGvilyell~G~~Pf~~~~~--~~~~~~i~~~~~~~------ 232 (444)
T 3soa_A 163 VEGEQQ--AWFGFAGTPGYLSPEVLRKDPYGKPVDLWACGVILYILLVGYPPFWDEDQ--HRLYQQIKAGAYDF------ 232 (444)
T ss_dssp CCTTCC--BCCCSCSCGGGCCHHHHTTCCBCTHHHHHHHHHHHHHHHHSSCSCCCSSH--HHHHHHHHHTCCCC------
T ss_pred ecCCCc--eeecccCCcccCCHHHhcCCCCCCccccHHHHHHHHHHHhCCCCCCCccH--HHHHHHHHhCCCCC------
Confidence 654322 22345799999999999999999999999999999999999999965321 11111111110000
Q ss_pred ccchhhhhhhhhhHHHHHHHHHHHhhccCCCCCCCCCHHHHHH
Q 005040 658 ANLVREEQAFSDKMDCLFSIMDLALDCCMDTPHKRIHMTDAAA 700 (717)
Q Consensus 658 ~~~~~~~~~~~~~~~~~~~l~~li~~cl~~~P~~Rpt~~ev~~ 700 (717)
. .+....++.++.+++.+||+.||++|||+.|+++
T Consensus 233 ---~-----~~~~~~~s~~~~~li~~~L~~dP~~Rpta~e~L~ 267 (444)
T 3soa_A 233 ---P-----SPEWDTVTPEAKDLINKMLTINPSKRITAAEALK 267 (444)
T ss_dssp ---C-----TTTTTTSCHHHHHHHHHHSCSSTTTSCCHHHHHH
T ss_pred ---C-----ccccccCCHHHHHHHHHHcCCChhHCCCHHHHhc
Confidence 0 0011234566889999999999999999999986
No 60
>3gen_A Tyrosine-protein kinase BTK; bruton'S tyrosine kinase, 4-amino-5-(4-phenoxyphenyl)-5H- pyrrolo[3, 2-D]pyrimidin-7-YL-cyclopentane, TEC-family; HET: B43; 1.60A {Homo sapiens} PDB: 3k54_A* 3pj2_A* 3piy_A* 3piz_A* 3pj1_A* 3pix_A* 3pj3_A* 3p08_A 3ocs_A* 3oct_A* 1k2p_A
Probab=100.00 E-value=2.1e-41 Score=346.47 Aligned_cols=259 Identities=24% Similarity=0.368 Sum_probs=210.4
Q ss_pred HhccCCccccccccccEEEEEEEecCCCeEEEEEechhhHHHHHHHHHHHHHHHhcCCCceeeEeeeeecCCeeEEEEEc
Q 005040 425 ATDEFNECNLLGTGGFGSVYKGTLSDGTNVAIKIFNLQLERAFRSFDSECEILRNVRHRNLLKILGSCSNLDFKALVLEF 504 (717)
Q Consensus 425 ~~~~~~~~~~lg~G~~g~V~~~~~~~~~~vavK~~~~~~~~~~~~~~~e~~~l~~l~hpniv~~~~~~~~~~~~~lv~e~ 504 (717)
..++|++.+.||+|+||.||+|.++++..||+|++..... ..+.+.+|++++++++||||+++++++.+....++||||
T Consensus 22 ~~~~y~~~~~lg~G~~g~V~~~~~~~~~~vavK~~~~~~~-~~~~~~~E~~~l~~l~h~~i~~~~~~~~~~~~~~lv~e~ 100 (283)
T 3gen_A 22 DPKDLTFLKELGTGQFGVVKYGKWRGQYDVAIKMIKEGSM-SEDEFIEEAKVMMNLSHEKLVQLYGVCTKQRPIFIITEY 100 (283)
T ss_dssp CGGGEEEEEECC---CEEEEEEEETTTEEEEEEEECTTSB-CHHHHHHHHHHHHTCCCTTBCCEEEEECSSSSEEEEECC
T ss_pred CHHHHHhHhhcCCCCCceEEEEEEcCCCeEEEEEecCCCC-CHHHHHHHHHHHhcCCCCCEeeEEEEEecCCCeEEEEec
Confidence 3478999999999999999999998888999999975532 235688999999999999999999999999999999999
Q ss_pred cCCCCHHHHHhhCCCCCCHHHHHHHHHHHHHHHHHHhhcCCCCCeEecCCCCCCeeeCCCCcEEEeeeccccccCCCCCc
Q 005040 505 MPNGSLEKWLYSHNYFLDILQRLNIMIDVGSALEYLHHCHSSAPIIHCDLKPTNILLDENMVAHVSDFGISKLLGEGEDS 584 (717)
Q Consensus 505 ~~~g~L~~~l~~~~~~~~~~~~~~i~~~i~~~l~~LH~~~~~~~ivH~dlk~~Nill~~~~~~kl~Dfgl~~~~~~~~~~ 584 (717)
+++++|.+++......+++..+..++.|++.||.||| +.+|+||||||+||+++.++.+||+|||++........
T Consensus 101 ~~~~~L~~~l~~~~~~~~~~~~~~i~~qi~~~l~~lH----~~~i~H~dikp~Nili~~~~~~kl~Dfg~~~~~~~~~~- 175 (283)
T 3gen_A 101 MANGCLLNYLREMRHRFQTQQLLEMCKDVCEAMEYLE----SKQFLHRDLAARNCLVNDQGVVKVSDFGLSRYVLDDEY- 175 (283)
T ss_dssp CTTCBHHHHHHCGGGCCCHHHHHHHHHHHHHHHHHHH----HTTCCCSSCSGGGEEECTTSCEEECSTTGGGGBCCHHH-
T ss_pred cCCCcHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHH----HCCccCCCCccceEEEcCCCCEEEcccccccccccccc-
Confidence 9999999999875566999999999999999999999 67899999999999999999999999999987643221
Q ss_pred eeeeccccCccccCCCccCCCCcCcccchhhHHHHHHHHHh-CCCCCCccccCcchHHHHHHhhCCCchhhhccccchhh
Q 005040 585 VIQTMTMATIGYMAPEYGSEGIVSTKCDVYSYGVLLMETFT-EKKPTDEMFTGEMSLRRWVKESLPHRLTEVVDANLVRE 663 (717)
Q Consensus 585 ~~~~~~~~t~~y~aPE~~~~~~~~~~~Dvws~G~il~el~t-g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 663 (717)
.......+|+.|+|||.+.+..++.++||||+|+++|||++ |+.||...... .....+.......
T Consensus 176 ~~~~~~~~~~~y~aPE~~~~~~~~~~~Dv~slG~~l~~l~t~g~~p~~~~~~~--~~~~~~~~~~~~~------------ 241 (283)
T 3gen_A 176 TSSVGSKFPVRWSPPEVLMYSKFSSKSDIWAFGVLMWEIYSLGKMPYERFTNS--ETAEHIAQGLRLY------------ 241 (283)
T ss_dssp HSTTSTTSCGGGCCHHHHHHCCCSHHHHHHHHHHHHHHHHTTTCCTTTTSCHH--HHHHHHHTTCCCC------------
T ss_pred ccccCCccCcccCCHHHhccCCCCchhhHHHHHHHHHHHHhCCCCCccccChh--HHHHHHhcccCCC------------
Confidence 11223346788999999988889999999999999999998 99999763221 1111111111000
Q ss_pred hhhhhhhHHHHHHHHHHHhhccCCCCCCCCCHHHHHHHHHHhHHh
Q 005040 664 EQAFSDKMDCLFSIMDLALDCCMDTPHKRIHMTDAAAKLRKIKAK 708 (717)
Q Consensus 664 ~~~~~~~~~~~~~l~~li~~cl~~~P~~Rpt~~ev~~~L~~~~~~ 708 (717)
.+..++..+.+++.+||+.||++|||++|+++.|+++...
T Consensus 242 -----~~~~~~~~l~~li~~~l~~~p~~Rps~~~ll~~L~~~~~~ 281 (283)
T 3gen_A 242 -----RPHLASEKVYTIMYSCWHEKADERPTFKILLSNILDVMDE 281 (283)
T ss_dssp -----CCTTCCHHHHHHHHHTTCSSGGGSCCHHHHHHHHHHHHHH
T ss_pred -----CCCcCCHHHHHHHHHHccCChhHCcCHHHHHHHHHHHhhc
Confidence 0112235688999999999999999999999999988654
No 61
>3mdy_A Bone morphogenetic protein receptor type-1B; complex (isomerase-protein kinase), receptor serine/threonin structural genomics consortium, SGC; HET: LDN; 2.05A {Homo sapiens} SCOP: d.144.1.7
Probab=100.00 E-value=2.1e-40 Score=348.16 Aligned_cols=273 Identities=26% Similarity=0.384 Sum_probs=209.9
Q ss_pred HHHHHHHhccCCccccccccccEEEEEEEecCCCeEEEEEechhhHHHHHHHHHHHHHHHhc--CCCceeeEeeeeecC-
Q 005040 419 YLDIRRATDEFNECNLLGTGGFGSVYKGTLSDGTNVAIKIFNLQLERAFRSFDSECEILRNV--RHRNLLKILGSCSNL- 495 (717)
Q Consensus 419 ~~~~~~~~~~~~~~~~lg~G~~g~V~~~~~~~~~~vavK~~~~~~~~~~~~~~~e~~~l~~l--~hpniv~~~~~~~~~- 495 (717)
....+...++|++.+.||+|+||.||+|+.. ++.||||++..... ..+..|.+++... +||||+++++++.+.
T Consensus 29 ~~~~~~~~~~y~~~~~lg~G~~g~V~~~~~~-~~~vavK~~~~~~~---~~~~~e~~~~~~~~~~h~~i~~~~~~~~~~~ 104 (337)
T 3mdy_A 29 LLVQRTIAKQIQMVKQIGKGRYGEVWMGKWR-GEKVAVKVFFTTEE---ASWFRETEIYQTVLMRHENILGFIAADIKGT 104 (337)
T ss_dssp HHHHTTHHHHCEEEEEEEEETTEEEEEEEET-TEEEEEEEEEGGGH---HHHHHHHHHHTSTTCCCTTBCCEEEEEEESC
T ss_pred cccccccccceEEEeEeecCCCeEEEEEEEC-CceEEEEEEecccc---chhhhHHHHHHHHhhcCCCeeeEEEEEccCC
Confidence 3344555689999999999999999999985 89999999865432 3344456666554 899999999998776
Q ss_pred ---CeeEEEEEccCCCCHHHHHhhCCCCCCHHHHHHHHHHHHHHHHHHhhcCCCC--------CeEecCCCCCCeeeCCC
Q 005040 496 ---DFKALVLEFMPNGSLEKWLYSHNYFLDILQRLNIMIDVGSALEYLHHCHSSA--------PIIHCDLKPTNILLDEN 564 (717)
Q Consensus 496 ---~~~~lv~e~~~~g~L~~~l~~~~~~~~~~~~~~i~~~i~~~l~~LH~~~~~~--------~ivH~dlk~~Nill~~~ 564 (717)
...++||||+++|+|.++++... +++..+..++.|++.||+||| +. +|+||||||+||+++.+
T Consensus 105 ~~~~~~~lv~e~~~~g~L~~~l~~~~--~~~~~~~~i~~~i~~~l~~lH----~~~~~~~~~~~ivH~Dikp~Nill~~~ 178 (337)
T 3mdy_A 105 GSWTQLYLITDYHENGSLYDYLKSTT--LDAKSMLKLAYSSVSGLCHLH----TEIFSTQGKPAIAHRDLKSKNILVKKN 178 (337)
T ss_dssp GGGCEEEEEECCCTTCBHHHHHHHCC--BCHHHHHHHHHHHHHHHHHHH----SCBCSTTCBCCEECSCCCGGGEEECTT
T ss_pred CCCCceEEEEeccCCCcHHHHhhccC--CCHHHHHHHHHHHHHHHHHHH----HhhhhhccCCCEEecccchHHEEECCC
Confidence 67899999999999999998754 899999999999999999999 45 89999999999999999
Q ss_pred CcEEEeeeccccccCCCCCce--eeeccccCccccCCCccCCCCcCcc------cchhhHHHHHHHHHhC----------
Q 005040 565 MVAHVSDFGISKLLGEGEDSV--IQTMTMATIGYMAPEYGSEGIVSTK------CDVYSYGVLLMETFTE---------- 626 (717)
Q Consensus 565 ~~~kl~Dfgl~~~~~~~~~~~--~~~~~~~t~~y~aPE~~~~~~~~~~------~Dvws~G~il~el~tg---------- 626 (717)
+.+||+|||++.......... ......||+.|+|||++.+..++.+ +|||||||++|||++|
T Consensus 179 ~~~kl~Dfg~a~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~~~~~~DiwslG~il~el~tg~~~~~~~~~~ 258 (337)
T 3mdy_A 179 GTCCIADLGLAVKFISDTNEVDIPPNTRVGTKRYMPPEVLDESLNRNHFQSYIMADMYSFGLILWEVARRCVSGGIVEEY 258 (337)
T ss_dssp SCEEECCCTTCEECC---------CCSSCSCGGGCCHHHHTTCCCTTCTHHHHHHHHHHHHHHHHHHHTTBCBTTBCCCC
T ss_pred CCEEEEeCCCceeeccccccccCCCCCCccCcceeChhhcccccCCccccCccccchHHHHHHHHHHHhccCcccccccc
Confidence 999999999998764332211 1234578999999999887766655 9999999999999999
Q ss_pred CCCCCccccCcchHHHHHHhhCCCchhhhccccchhhhhhhhhhHHHHHHHHHHHhhccCCCCCCCCCHHHHHHHHHHhH
Q 005040 627 KKPTDEMFTGEMSLRRWVKESLPHRLTEVVDANLVREEQAFSDKMDCLFSIMDLALDCCMDTPHKRIHMTDAAAKLRKIK 706 (717)
Q Consensus 627 ~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~cl~~~P~~Rpt~~ev~~~L~~~~ 706 (717)
+.||....................... + ..+......+++.++.+++.+||+.||++|||+.|+++.|+++.
T Consensus 259 ~~p~~~~~~~~~~~~~~~~~~~~~~~~----~----~~~~~~~~~~~~~~l~~li~~~l~~dP~~Rps~~ell~~L~~l~ 330 (337)
T 3mdy_A 259 QLPYHDLVPSDPSYEDMREIVCIKKLR----P----SFPNRWSSDECLRQMGKLMTECWAHNPASRLTALRVKKTLAKMS 330 (337)
T ss_dssp CCTTTTTSCSSCCHHHHHHHHTTSCCC----C----CCCGGGGGSHHHHHHHHHHHHHSCSSGGGSCCHHHHHHHHHHHH
T ss_pred cccHhhhcCCCCchhhhHHHHhhhccC----c----cccccchhhHHHHHHHHHHHHhhhhChhhCCCHHHHHHHHHHHH
Confidence 666655444333333332222111110 1 11111223467788999999999999999999999999999987
Q ss_pred Hhh
Q 005040 707 AKF 709 (717)
Q Consensus 707 ~~~ 709 (717)
+..
T Consensus 331 ~~~ 333 (337)
T 3mdy_A 331 ESQ 333 (337)
T ss_dssp HTT
T ss_pred hhc
Confidence 643
No 62
>4aw2_A Serine/threonine-protein kinase MRCK alpha; transferase, CDC42BPA; HET: 22E; 1.70A {Rattus norvegicus} PDB: 3tku_A* 3qfv_A*
Probab=100.00 E-value=3.5e-42 Score=370.74 Aligned_cols=261 Identities=22% Similarity=0.268 Sum_probs=208.7
Q ss_pred HHHHHHhccCCccccccccccEEEEEEEec-CCCeEEEEEechhhH---HHHHHHHHHHHHHHhcCCCceeeEeeeeecC
Q 005040 420 LDIRRATDEFNECNLLGTGGFGSVYKGTLS-DGTNVAIKIFNLQLE---RAFRSFDSECEILRNVRHRNLLKILGSCSNL 495 (717)
Q Consensus 420 ~~~~~~~~~~~~~~~lg~G~~g~V~~~~~~-~~~~vavK~~~~~~~---~~~~~~~~e~~~l~~l~hpniv~~~~~~~~~ 495 (717)
.+.+...++|++.+.||+|+||.||+|+.+ +++.||+|++.+... .....+.+|..+++.++||||+++++++.+.
T Consensus 67 ~~~~~~~~~y~~~~~LG~G~fG~V~~~~~~~~~~~vAvK~~~~~~~~~~~~~~~~~~E~~il~~~~hp~Iv~l~~~~~~~ 146 (437)
T 4aw2_A 67 KQMRLHREDFEILKVIGRGAFGEVAVVKLKNADKVFAMKILNKWEMLKRAETACFREERDVLVNGDSKWITTLHYAFQDD 146 (437)
T ss_dssp HHHSCCGGGEEEEEEEEECSSEEEEEEEETTTTEEEEEEEEEHHHHHHTTTTCCHHHHHHHHHHSCTTTBCCEEEEEECS
T ss_pred hcccCChhheEEEEEEEeCCCEEEEEEEEcCCCcEEEEEEEEHHHhhhHHHHHHHHHHHHHHHhCCCCCEEEEEEEEeeC
Confidence 344556689999999999999999999986 588999999976432 1223478899999999999999999999999
Q ss_pred CeeEEEEEccCCCCHHHHHhhCCCCCCHHHHHHHHHHHHHHHHHHhhcCCCCCeEecCCCCCCeeeCCCCcEEEeeeccc
Q 005040 496 DFKALVLEFMPNGSLEKWLYSHNYFLDILQRLNIMIDVGSALEYLHHCHSSAPIIHCDLKPTNILLDENMVAHVSDFGIS 575 (717)
Q Consensus 496 ~~~~lv~e~~~~g~L~~~l~~~~~~~~~~~~~~i~~~i~~~l~~LH~~~~~~~ivH~dlk~~Nill~~~~~~kl~Dfgl~ 575 (717)
+..|+||||+++|+|.+++......+++..+..++.|++.||.||| +.+|+||||||+|||++.++.+||+|||++
T Consensus 147 ~~~~lV~Ey~~gg~L~~~l~~~~~~l~e~~~~~~~~qi~~aL~~LH----~~giiHrDLKp~NILl~~~g~vkL~DFGla 222 (437)
T 4aw2_A 147 NNLYLVMDYYVGGDLLTLLSKFEDRLPEEMARFYLAEMVIAIDSVH----QLHYVHRDIKPDNILMDMNGHIRLADFGSC 222 (437)
T ss_dssp SEEEEEECCCTTCBHHHHHHTTTTCCCHHHHHHHHHHHHHHHHHHH----HTTEECCCCSGGGEEECTTSCEEECCCTTC
T ss_pred CEEEEEEecCCCCcHHHHHHHccCCCCHHHHHHHHHHHHHHHHHHH----hCCeEecccCHHHeeEcCCCCEEEcchhhh
Confidence 9999999999999999999986666999999999999999999999 678999999999999999999999999999
Q ss_pred cccCCCCCceeeeccccCccccCCCccC-----CCCcCcccchhhHHHHHHHHHhCCCCCCccccCcchHHHHHHhhCCC
Q 005040 576 KLLGEGEDSVIQTMTMATIGYMAPEYGS-----EGIVSTKCDVYSYGVLLMETFTEKKPTDEMFTGEMSLRRWVKESLPH 650 (717)
Q Consensus 576 ~~~~~~~~~~~~~~~~~t~~y~aPE~~~-----~~~~~~~~Dvws~G~il~el~tg~~p~~~~~~~~~~~~~~~~~~~~~ 650 (717)
+....... ......+||+.|+|||++. .+.++.++|||||||++|||++|+.||.+....+ ..........
T Consensus 223 ~~~~~~~~-~~~~~~~GT~~Y~APE~l~~~~~~~~~~~~~~DvwSlGvil~elltG~~Pf~~~~~~~-~~~~i~~~~~-- 298 (437)
T 4aw2_A 223 LKLMEDGT-VQSSVAVGTPDYISPEILQAMEGGKGRYGPECDWWSLGVCMYEMLYGETPFYAESLVE-TYGKIMNHKE-- 298 (437)
T ss_dssp EECCTTSC-EECCSCCSCGGGCCHHHHHHHHTSCCEECTHHHHHHHHHHHHHHHHSSCTTCCSSHHH-HHHHHHTHHH--
T ss_pred hhcccCCC-cccccccCCcCeeChHHHhhcccCCCCCCCcCeeHHHHHHHHHHHhCCCCCCCCChhH-HHHhhhhccc--
Confidence 87654332 2234457999999999876 5679999999999999999999999997532111 1111110000
Q ss_pred chhhhccccchhhhhhhhhhHHHHHHHHHHHhhccCCCCCC--CCCHHHHHH
Q 005040 651 RLTEVVDANLVREEQAFSDKMDCLFSIMDLALDCCMDTPHK--RIHMTDAAA 700 (717)
Q Consensus 651 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~cl~~~P~~--Rpt~~ev~~ 700 (717)
. ..+.. ....++.++.++|.+|+..+|++ ||+++|+++
T Consensus 299 ---~---~~~p~------~~~~~s~~~~dLi~~lL~~~~~r~~r~~~~eil~ 338 (437)
T 4aw2_A 299 ---R---FQFPT------QVTDVSENAKDLIRRLICSREHRLGQNGIEDFKK 338 (437)
T ss_dssp ---H---CCCCS------SCCCSCHHHHHHHHTTSSCGGGCTTTTTTHHHHT
T ss_pred ---c---ccCCc------ccccCCHHHHHHHHHHhcccccccCCCCHHHHhC
Confidence 0 00000 00124566889999999988888 999999876
No 63
>2bdw_A Hypothetical protein K11E8.1D; kinase, calmodulin activated, transferase; 1.80A {Caenorhabditis elegans} PDB: 2wel_A* 2v7o_A* 2vz6_A* 1cdm_B 1cm1_B 1cm4_B
Probab=100.00 E-value=5.2e-41 Score=354.95 Aligned_cols=253 Identities=23% Similarity=0.331 Sum_probs=206.6
Q ss_pred HhccCCccccccccccEEEEEEEec-CCCeEEEEEechhh--HHHHHHHHHHHHHHHhcCCCceeeEeeeeecCCeeEEE
Q 005040 425 ATDEFNECNLLGTGGFGSVYKGTLS-DGTNVAIKIFNLQL--ERAFRSFDSECEILRNVRHRNLLKILGSCSNLDFKALV 501 (717)
Q Consensus 425 ~~~~~~~~~~lg~G~~g~V~~~~~~-~~~~vavK~~~~~~--~~~~~~~~~e~~~l~~l~hpniv~~~~~~~~~~~~~lv 501 (717)
..++|++.+.||+|+||.||+|..+ +++.||+|++.... ....+.+.+|++++++++||||+++++++.+.+..|+|
T Consensus 27 ~~~~y~~~~~lG~G~~g~V~~~~~~~~~~~~avK~~~~~~~~~~~~~~~~~E~~il~~l~hpnIv~~~~~~~~~~~~~lv 106 (362)
T 2bdw_A 27 FSDNYDVKEELGKGAFSVVRRCVHKTTGLEFAAKIINTKKLSARDFQKLEREARICRKLQHPNIVRLHDSIQEESFHYLV 106 (362)
T ss_dssp HHHHEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEETTTCCHHHHHHHHHHHHHHHHCCCTTBCCEEEEEECSSEEEEE
T ss_pred cccCeEEeeEEecCCCeEEEEEEECCCCCEEEEEEEEcccCCHHHHHHHHHHHHHHHhCCCCCCCeEEEEEEeCCEEEEE
Confidence 3578999999999999999999975 78999999997543 34456788999999999999999999999999999999
Q ss_pred EEccCCCCHHHHHhhCCCCCCHHHHHHHHHHHHHHHHHHhhcCCCCCeEecCCCCCCeeeCCC---CcEEEeeecccccc
Q 005040 502 LEFMPNGSLEKWLYSHNYFLDILQRLNIMIDVGSALEYLHHCHSSAPIIHCDLKPTNILLDEN---MVAHVSDFGISKLL 578 (717)
Q Consensus 502 ~e~~~~g~L~~~l~~~~~~~~~~~~~~i~~~i~~~l~~LH~~~~~~~ivH~dlk~~Nill~~~---~~~kl~Dfgl~~~~ 578 (717)
|||+++|+|.+++.... .+++..+..++.|++.||.||| +.+|+||||||+||+++.+ +.+||+|||++...
T Consensus 107 ~e~~~gg~L~~~l~~~~-~~~~~~~~~~~~qi~~al~~lH----~~~ivH~Dlkp~NIll~~~~~~~~~kl~DfG~a~~~ 181 (362)
T 2bdw_A 107 FDLVTGGELFEDIVARE-FYSEADASHCIQQILESIAYCH----SNGIVHRNLKPENLLLASKAKGAAVKLADFGLAIEV 181 (362)
T ss_dssp ECCCCSCBHHHHHTTCS-CCCHHHHHHHHHHHHHHHHHHH----HTTCBCCCCSGGGEEESCSSTTCCEEECCCTTCBCC
T ss_pred EecCCCCCHHHHHHHcC-CCCHHHHHHHHHHHHHHHHHHH----HCCeEeccCchHHEEEecCCCCCCEEEeecCcceEe
Confidence 99999999999998654 4899999999999999999999 6789999999999999865 45999999999876
Q ss_pred CCCCCceeeeccccCccccCCCccCCCCcCcccchhhHHHHHHHHHhCCCCCCccccCcchHHHHHHhhCCCchhhhccc
Q 005040 579 GEGEDSVIQTMTMATIGYMAPEYGSEGIVSTKCDVYSYGVLLMETFTEKKPTDEMFTGEMSLRRWVKESLPHRLTEVVDA 658 (717)
Q Consensus 579 ~~~~~~~~~~~~~~t~~y~aPE~~~~~~~~~~~Dvws~G~il~el~tg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 658 (717)
..... .....||+.|+|||++.+..++.++||||+||++|||++|+.||..... ......+.......
T Consensus 182 ~~~~~---~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~~ll~g~~Pf~~~~~--~~~~~~i~~~~~~~------- 249 (362)
T 2bdw_A 182 NDSEA---WHGFAGTPGYLSPEVLKKDPYSKPVDIWACGVILYILLVGYPPFWDEDQ--HRLYAQIKAGAYDY------- 249 (362)
T ss_dssp TTCCS---CCCSCSCTTTCCHHHHTTCCCCTHHHHHHHHHHHHHHHHSSCSSCCSSH--HHHHHHHHHTCCCC-------
T ss_pred cCCcc---cccCCCCccccCHHHHccCCCCchhhHHHHHHHHHHHHHCCCCCCCCCH--HHHHHHHHhCCCCC-------
Confidence 53322 2345799999999999999999999999999999999999999975321 11111111111000
Q ss_pred cchhhhhhhhhhHHHHHHHHHHHhhccCCCCCCCCCHHHHHHH
Q 005040 659 NLVREEQAFSDKMDCLFSIMDLALDCCMDTPHKRIHMTDAAAK 701 (717)
Q Consensus 659 ~~~~~~~~~~~~~~~~~~l~~li~~cl~~~P~~Rpt~~ev~~~ 701 (717)
. ......++.++.+++.+||+.||++|||+.|+++.
T Consensus 250 --~-----~~~~~~~~~~~~~li~~~L~~dP~~R~t~~e~l~h 285 (362)
T 2bdw_A 250 --P-----SPEWDTVTPEAKSLIDSMLTVNPKKRITADQALKV 285 (362)
T ss_dssp --C-----TTGGGGSCHHHHHHHHHHSCSSGGGSCCHHHHTTS
T ss_pred --C-----cccccCCCHHHHHHHHHHcCCChhhCcCHHHHhcC
Confidence 0 01112345668899999999999999999998753
No 64
>1kob_A Twitchin; kinase, intrasteric regulation; 2.30A {Aplysia californica} SCOP: d.144.1.7
Probab=100.00 E-value=4.6e-41 Score=357.37 Aligned_cols=252 Identities=23% Similarity=0.305 Sum_probs=208.2
Q ss_pred hccCCccccccccccEEEEEEEec-CCCeEEEEEechhhHHHHHHHHHHHHHHHhcCCCceeeEeeeeecCCeeEEEEEc
Q 005040 426 TDEFNECNLLGTGGFGSVYKGTLS-DGTNVAIKIFNLQLERAFRSFDSECEILRNVRHRNLLKILGSCSNLDFKALVLEF 504 (717)
Q Consensus 426 ~~~~~~~~~lg~G~~g~V~~~~~~-~~~~vavK~~~~~~~~~~~~~~~e~~~l~~l~hpniv~~~~~~~~~~~~~lv~e~ 504 (717)
.++|++.+.||+|+||.||+|... +++.||+|++..........+.+|++++++++||||+++++++.+....++||||
T Consensus 50 ~~~y~i~~~LG~G~~g~Vy~~~~~~~~~~~a~K~~~~~~~~~~~~~~~E~~il~~l~hpnIv~~~~~~~~~~~~~lv~E~ 129 (387)
T 1kob_A 50 YDYYDILEELGSGAFGVVHRCVEKATGRVFVAKFINTPYPLDKYTVKNEISIMNQLHHPKLINLHDAFEDKYEMVLILEF 129 (387)
T ss_dssp GGTEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEECCSHHHHHHHHHHHHHHTTCCSTTBCCEEEEEECSSEEEEEEEC
T ss_pred ccceEEEEEEecCCCEEEEEEEECCCCCEEEEEEecccchhhHHHHHHHHHHHHhCCCcCCCeEEEEEEeCCEEEEEEEc
Confidence 468999999999999999999975 7899999999765544556788999999999999999999999999999999999
Q ss_pred cCCCCHHHHHhhCCCCCCHHHHHHHHHHHHHHHHHHhhcCCCCCeEecCCCCCCeeeCC--CCcEEEeeeccccccCCCC
Q 005040 505 MPNGSLEKWLYSHNYFLDILQRLNIMIDVGSALEYLHHCHSSAPIIHCDLKPTNILLDE--NMVAHVSDFGISKLLGEGE 582 (717)
Q Consensus 505 ~~~g~L~~~l~~~~~~~~~~~~~~i~~~i~~~l~~LH~~~~~~~ivH~dlk~~Nill~~--~~~~kl~Dfgl~~~~~~~~ 582 (717)
+++|+|.+++......+++..+..++.|++.||+||| +.+|+||||||+||+++. ++.+||+|||++.......
T Consensus 130 ~~gg~L~~~l~~~~~~l~~~~~~~i~~qi~~aL~~LH----~~givHrDlkp~NIll~~~~~~~vkL~DFG~a~~~~~~~ 205 (387)
T 1kob_A 130 LSGGELFDRIAAEDYKMSEAEVINYMRQACEGLKHMH----EHSIVHLDIKPENIMCETKKASSVKIIDFGLATKLNPDE 205 (387)
T ss_dssp CCCCBHHHHTTCTTCCBCHHHHHHHHHHHHHHHHHHH----HTTEECCCCCGGGEEESSTTCCCEEECCCTTCEECCTTS
T ss_pred CCCCcHHHHHHhhcCCCCHHHHHHHHHHHHHHHHHHH----hCCeeecccchHHeEEecCCCCceEEEecccceecCCCc
Confidence 9999999999877667999999999999999999999 678999999999999974 5789999999998775432
Q ss_pred CceeeeccccCccccCCCccCCCCcCcccchhhHHHHHHHHHhCCCCCCccccCcchHHHHHHhhCCCchhhhccccchh
Q 005040 583 DSVIQTMTMATIGYMAPEYGSEGIVSTKCDVYSYGVLLMETFTEKKPTDEMFTGEMSLRRWVKESLPHRLTEVVDANLVR 662 (717)
Q Consensus 583 ~~~~~~~~~~t~~y~aPE~~~~~~~~~~~Dvws~G~il~el~tg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 662 (717)
. .....||+.|+|||++.+..++.++||||+||++|||++|+.||..... ......+..... . .+.
T Consensus 206 ~---~~~~~gt~~y~aPE~~~~~~~~~~~DiwSlG~il~elltg~~Pf~~~~~--~~~~~~i~~~~~-~----~~~---- 271 (387)
T 1kob_A 206 I---VKVTTATAEFAAPEIVDREPVGFYTDMWAIGVLGYVLLSGLSPFAGEDD--LETLQNVKRCDW-E----FDE---- 271 (387)
T ss_dssp C---EEEECSSGGGCCHHHHTTCCBCHHHHHHHHHHHHHHHHHSCCSSCCSSH--HHHHHHHHHCCC-C----CCS----
T ss_pred c---eeeeccCCCccCchhccCCCCCCcccEeeHhHHHHHHHhCCCCCCCCCH--HHHHHHHHhCCC-C----CCc----
Confidence 2 2334689999999999999999999999999999999999999976321 111111111000 0 000
Q ss_pred hhhhhhhhHHHHHHHHHHHhhccCCCCCCCCCHHHHHH
Q 005040 663 EEQAFSDKMDCLFSIMDLALDCCMDTPHKRIHMTDAAA 700 (717)
Q Consensus 663 ~~~~~~~~~~~~~~l~~li~~cl~~~P~~Rpt~~ev~~ 700 (717)
.....++.++.+++.+||+.||++|||+.|+++
T Consensus 272 -----~~~~~~s~~~~~li~~~L~~dP~~Rpt~~ell~ 304 (387)
T 1kob_A 272 -----DAFSSVSPEAKDFIKNLLQKEPRKRLTVHDALE 304 (387)
T ss_dssp -----STTTTSCHHHHHHHHTTSCSSGGGSCCHHHHHT
T ss_pred -----cccccCCHHHHHHHHHHcCCChhHCcCHHHHhh
Confidence 001134466889999999999999999999986
No 65
>4f0f_A Serine/threonine-protein kinase ROCO4; LRRK2, ATP-binding, nucleotide serine/threonine-protein kinase, transferase, signaling Pro; HET: ACP; 1.80A {Dictyostelium discoideum} PDB: 4f0g_A 4f1t_A* 4f1m_A* 4f1o_A*
Probab=100.00 E-value=3.9e-41 Score=345.22 Aligned_cols=252 Identities=30% Similarity=0.467 Sum_probs=205.7
Q ss_pred ccCCccccccccccEEEEEEEec-CCCeEEEEEechhhH-------HHHHHHHHHHHHHHhcCCCceeeEeeeeecCCee
Q 005040 427 DEFNECNLLGTGGFGSVYKGTLS-DGTNVAIKIFNLQLE-------RAFRSFDSECEILRNVRHRNLLKILGSCSNLDFK 498 (717)
Q Consensus 427 ~~~~~~~~lg~G~~g~V~~~~~~-~~~~vavK~~~~~~~-------~~~~~~~~e~~~l~~l~hpniv~~~~~~~~~~~~ 498 (717)
++|++.+.||+|+||.||+|.+. +++.||+|++..... ...+.+.+|++++++++||||+++++++.+..
T Consensus 19 ~~y~~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~~~-- 96 (287)
T 4f0f_A 19 NEIEYEKQIGKGGFGLVHKGRLVKDKSVVAIKSLILGDSEGETEMIEKFQEFQREVFIMSNLNHPNIVKLYGLMHNPP-- 96 (287)
T ss_dssp TTEEEEEECCCCSSSCEEEEEETTTCCEEEEEECCCCTTTCCHHHHCCSHHHHHHHHHHTTCCCTTBCCEEEEETTTT--
T ss_pred ccceehhccccCCceeEEEEEEcCCceEEEEEEeeccccccchhHHHHHHHHHHHHHHHHhCCCCCchhhheeecCCC--
Confidence 68899999999999999999975 789999999854321 11267889999999999999999999997665
Q ss_pred EEEEEccCCCCHHHHHhhCCCCCCHHHHHHHHHHHHHHHHHHhhcCCCCC--eEecCCCCCCeeeCCCCc-----EEEee
Q 005040 499 ALVLEFMPNGSLEKWLYSHNYFLDILQRLNIMIDVGSALEYLHHCHSSAP--IIHCDLKPTNILLDENMV-----AHVSD 571 (717)
Q Consensus 499 ~lv~e~~~~g~L~~~l~~~~~~~~~~~~~~i~~~i~~~l~~LH~~~~~~~--ivH~dlk~~Nill~~~~~-----~kl~D 571 (717)
++||||+++|+|.+++......+++..+..++.|++.||+||| +.+ |+||||||+||+++.++. +||+|
T Consensus 97 ~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~l~~~l~~lH----~~~~~ivH~dikp~Nil~~~~~~~~~~~~kl~D 172 (287)
T 4f0f_A 97 RMVMEFVPCGDLYHRLLDKAHPIKWSVKLRLMLDIALGIEYMQ----NQNPPIVHRDLRSPNIFLQSLDENAPVCAKVAD 172 (287)
T ss_dssp EEEEECCTTCBHHHHHHCTTSCCCHHHHHHHHHHHHHHHHHHH----TSSSCCBCSCCSGGGEEESCCCTTCSCCEEECC
T ss_pred eEEEEecCCCCHHHHHhcccCCccHHHHHHHHHHHHHHHHHHH----hCCCCeecCCCCcceEEEeccCCCCceeEEeCC
Confidence 7999999999999999877777999999999999999999999 667 999999999999988776 99999
Q ss_pred eccccccCCCCCceeeeccccCccccCCCcc--CCCCcCcccchhhHHHHHHHHHhCCCCCCccccCcchHHHHHHhhCC
Q 005040 572 FGISKLLGEGEDSVIQTMTMATIGYMAPEYG--SEGIVSTKCDVYSYGVLLMETFTEKKPTDEMFTGEMSLRRWVKESLP 649 (717)
Q Consensus 572 fgl~~~~~~~~~~~~~~~~~~t~~y~aPE~~--~~~~~~~~~Dvws~G~il~el~tg~~p~~~~~~~~~~~~~~~~~~~~ 649 (717)
||+++.... ......||+.|+|||++ ....++.++||||+|+++|||++|+.||...................
T Consensus 173 fg~~~~~~~-----~~~~~~g~~~y~aPE~~~~~~~~~~~~~Di~slG~~l~~l~~g~~pf~~~~~~~~~~~~~~~~~~~ 247 (287)
T 4f0f_A 173 FGLSQQSVH-----SVSGLLGNFQWMAPETIGAEEESYTEKADTYSFAMILYTILTGEGPFDEYSYGKIKFINMIREEGL 247 (287)
T ss_dssp CTTCBCCSS-----CEECCCCCCTTSCGGGSSCSSCEECHHHHHHHHHHHHHHHHHSSCTTTTCCCCHHHHHHHHHHSCC
T ss_pred CCccccccc-----cccccCCCccccCchhhccCCCCcCchhhHHHHHHHHHHHHcCCCCCccccccHHHHHHHHhccCC
Confidence 999975432 22345689999999988 45668899999999999999999999997644333222222221110
Q ss_pred CchhhhccccchhhhhhhhhhHHHHHHHHHHHhhccCCCCCCCCCHHHHHHHHHHh
Q 005040 650 HRLTEVVDANLVREEQAFSDKMDCLFSIMDLALDCCMDTPHKRIHMTDAAAKLRKI 705 (717)
Q Consensus 650 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~cl~~~P~~Rpt~~ev~~~L~~~ 705 (717)
. . .....++.++.+++.+||+.||++|||++|+++.|+++
T Consensus 248 ~-------~---------~~~~~~~~~l~~li~~~l~~dp~~Rps~~~ll~~L~~l 287 (287)
T 4f0f_A 248 R-------P---------TIPEDCPPRLRNVIELCWSGDPKKRPHFSYIVKELSEL 287 (287)
T ss_dssp C-------C---------CCCTTSCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHTC
T ss_pred C-------C---------CCCcccCHHHHHHHHHHhcCChhhCcCHHHHHHHHHhC
Confidence 0 0 01113456688999999999999999999999999864
No 66
>2pvf_A Fibroblast growth factor receptor 2; kinase domain fold consisting of N- and C-lobes, transferase; HET: PTR ACP; 1.80A {Homo sapiens} PDB: 3cly_A* 2pzr_A* 2pzp_A* 2pvy_A* 2pz5_A* 2q0b_A* 2pwl_A* 2py3_A* 3ri1_A* 1gjo_A 1oec_A* 3b2t_A* 3gql_A* 3gqi_A* 1fgk_A 1fgi_A* 1agw_A 2fgi_A* 3js2_A* 3ky2_A ...
Probab=100.00 E-value=5.2e-41 Score=352.03 Aligned_cols=263 Identities=24% Similarity=0.425 Sum_probs=214.5
Q ss_pred hccCCccccccccccEEEEEEEec--------CCCeEEEEEechhh-HHHHHHHHHHHHHHHhc-CCCceeeEeeeeecC
Q 005040 426 TDEFNECNLLGTGGFGSVYKGTLS--------DGTNVAIKIFNLQL-ERAFRSFDSECEILRNV-RHRNLLKILGSCSNL 495 (717)
Q Consensus 426 ~~~~~~~~~lg~G~~g~V~~~~~~--------~~~~vavK~~~~~~-~~~~~~~~~e~~~l~~l-~hpniv~~~~~~~~~ 495 (717)
.++|++.+.||+|+||.||+|.+. +++.||+|++.... ....+.+.+|+++++++ +||||+++++++.+.
T Consensus 34 ~~~y~~~~~lG~G~~g~Vy~~~~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~~hp~iv~~~~~~~~~ 113 (334)
T 2pvf_A 34 RDKLTLGKPLGEGAFGQVVMAEAVGIDKDKPKEAVTVAVKMLKDDATEKDLSDLVSEMEMMKMIGKHKNIINLLGACTQD 113 (334)
T ss_dssp GGGEEEEEEEEECSSCEEEEEEETTCSTTCC---CEEEEEECCTTCCHHHHHHHHHHHHHHHHHCCCTTBCCEEEEECSS
T ss_pred HhHeEEeeEEeecCceeEEEeEeccccccccccceEEEEeeeccCCcHHHHHHHHHHHHHHHHhhcCCCEeeEEEEEccC
Confidence 478999999999999999999863 56789999997553 34456788999999999 899999999999999
Q ss_pred CeeEEEEEccCCCCHHHHHhhCC---------------CCCCHHHHHHHHHHHHHHHHHHhhcCCCCCeEecCCCCCCee
Q 005040 496 DFKALVLEFMPNGSLEKWLYSHN---------------YFLDILQRLNIMIDVGSALEYLHHCHSSAPIIHCDLKPTNIL 560 (717)
Q Consensus 496 ~~~~lv~e~~~~g~L~~~l~~~~---------------~~~~~~~~~~i~~~i~~~l~~LH~~~~~~~ivH~dlk~~Nil 560 (717)
+..++||||+++|+|.+++.... ..+++..+..++.|+++||.||| +.+|+||||||+||+
T Consensus 114 ~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~qi~~aL~~LH----~~~ivH~Dlkp~NIl 189 (334)
T 2pvf_A 114 GPLYVIVEYASKGNLREYLRARRPPGMEYSYDINRVPEEQMTFKDLVSCTYQLARGMEYLA----SQKCIHRDLAARNVL 189 (334)
T ss_dssp SCCEEEEECCTTCBHHHHHHTTSCTTCCSCC--------CCCHHHHHHHHHHHHHHHHHHH----HTTEECSCCSGGGEE
T ss_pred CceEEEEECCCCCcHHHHHHHhccccccccccccccccccCCHHHHHHHHHHHHHHHHHHH----hCCeeCCCCccceEE
Confidence 99999999999999999998643 23889999999999999999999 678999999999999
Q ss_pred eCCCCcEEEeeeccccccCCCCCceeeeccccCccccCCCccCCCCcCcccchhhHHHHHHHHHh-CCCCCCccccCcch
Q 005040 561 LDENMVAHVSDFGISKLLGEGEDSVIQTMTMATIGYMAPEYGSEGIVSTKCDVYSYGVLLMETFT-EKKPTDEMFTGEMS 639 (717)
Q Consensus 561 l~~~~~~kl~Dfgl~~~~~~~~~~~~~~~~~~t~~y~aPE~~~~~~~~~~~Dvws~G~il~el~t-g~~p~~~~~~~~~~ 639 (717)
++.++.+||+|||++................+|+.|+|||++.+..++.++||||||+++|||++ |+.||..... ..
T Consensus 190 l~~~~~~kL~Dfg~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~ellt~g~~p~~~~~~--~~ 267 (334)
T 2pvf_A 190 VTENNVMKIADFGLARDINNIDYYKKTTNGRLPVKWMAPEALFDRVYTHQSDVWSFGVLMWEIFTLGGSPYPGIPV--EE 267 (334)
T ss_dssp ECTTCCEEECCCTTCEECTTTSSEECCSCCCCCGGGCCHHHHHHCEECHHHHHHHHHHHHHHHHTTSCCSSTTCCH--HH
T ss_pred EcCCCCEEEccccccccccccccccccCCCCcccceeChHHhcCCCcChHHHHHHHHHHHHHHHhCCCCCcCcCCH--HH
Confidence 99999999999999987765443333344457889999999888889999999999999999999 9999975321 11
Q ss_pred HHHHHHhhCCCchhhhccccchhhhhhhhhhHHHHHHHHHHHhhccCCCCCCCCCHHHHHHHHHHhHHhhcc
Q 005040 640 LRRWVKESLPHRLTEVVDANLVREEQAFSDKMDCLFSIMDLALDCCMDTPHKRIHMTDAAAKLRKIKAKFLD 711 (717)
Q Consensus 640 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~cl~~~P~~Rpt~~ev~~~L~~~~~~~~~ 711 (717)
....+...... .....++.++.+++.+||+.||++|||+.|+++.|+++.....+
T Consensus 268 ~~~~~~~~~~~-----------------~~~~~~~~~l~~li~~~l~~dp~~Rps~~ell~~L~~l~~~~~~ 322 (334)
T 2pvf_A 268 LFKLLKEGHRM-----------------DKPANCTNELYMMMRDCWHAVPSQRPTFKQLVEDLDRILTLTTN 322 (334)
T ss_dssp HHHHHHHTCCC-----------------CCCTTCCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHHHHHC-
T ss_pred HHHHHhcCCCC-----------------CCCccCCHHHHHHHHHHccCChhhCcCHHHHHHHHHHHHhcccc
Confidence 11211111100 01123456688999999999999999999999999999776543
No 67
>1csn_A Casein kinase-1; phosphotransferase; HET: ATP; 2.00A {Schizosaccharomyces pombe} SCOP: d.144.1.7 PDB: 1eh4_A* 2csn_A*
Probab=100.00 E-value=5.1e-41 Score=346.34 Aligned_cols=266 Identities=14% Similarity=0.106 Sum_probs=214.9
Q ss_pred hccCCccccccccccEEEEEEEe-cCCCeEEEEEechhhHHHHHHHHHHHHHHHhc-CCCceeeEeeeeecCCeeEEEEE
Q 005040 426 TDEFNECNLLGTGGFGSVYKGTL-SDGTNVAIKIFNLQLERAFRSFDSECEILRNV-RHRNLLKILGSCSNLDFKALVLE 503 (717)
Q Consensus 426 ~~~~~~~~~lg~G~~g~V~~~~~-~~~~~vavK~~~~~~~~~~~~~~~e~~~l~~l-~hpniv~~~~~~~~~~~~~lv~e 503 (717)
.++|++.+.||+|+||.||+|.. .+++.||||++.... ..+.+.+|+++++.+ +|++++++++++.+....++|||
T Consensus 9 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~--~~~~~~~e~~~~~~l~~~~~i~~~~~~~~~~~~~~lv~e 86 (298)
T 1csn_A 9 GVHYKVGRRIGEGSFGVIFEGTNLLNNQQVAIKFEPRRS--DAPQLRDEYRTYKLLAGCTGIPNVYYFGQEGLHNVLVID 86 (298)
T ss_dssp TTTEEEEEEEEECSSCEEEEEEETTTTEEEEEEEEECCT--TSCCHHHHHHHHHHTTTCTTCCCEEEEEEETTEEEEEEE
T ss_pred ccceEEEEEEeecCCEEEEEEEECCCCcEEEEEEeccCC--ccHHHHHHHHHHHHHhcCCCCCeEEeecCCCceeEEEEE
Confidence 46799999999999999999996 479999999986443 224577899999999 79999999999999999999999
Q ss_pred ccCCCCHHHHHhhCCCCCCHHHHHHHHHHHHHHHHHHhhcCCCCCeEecCCCCCCeeeCCCCc-----EEEeeecccccc
Q 005040 504 FMPNGSLEKWLYSHNYFLDILQRLNIMIDVGSALEYLHHCHSSAPIIHCDLKPTNILLDENMV-----AHVSDFGISKLL 578 (717)
Q Consensus 504 ~~~~g~L~~~l~~~~~~~~~~~~~~i~~~i~~~l~~LH~~~~~~~ivH~dlk~~Nill~~~~~-----~kl~Dfgl~~~~ 578 (717)
|+ +++|.+++...+..+++..+..++.|++.||+||| +.+|+||||||+||+++.++. +||+|||+++..
T Consensus 87 ~~-~~~L~~~l~~~~~~~~~~~~~~i~~qi~~~l~~lH----~~~ivH~Dlkp~NIl~~~~~~~~~~~~kl~Dfg~~~~~ 161 (298)
T 1csn_A 87 LL-GPSLEDLLDLCGRKFSVKTVAMAAKQMLARVQSIH----EKSLVYRDIKPDNFLIGRPNSKNANMIYVVDFGMVKFY 161 (298)
T ss_dssp CC-CCBHHHHHHHTTTCCCHHHHHHHHHHHHHHHHHHH----TTTEECCCCCGGGEEECCSSSTTTTCEEECCCTTCEES
T ss_pred ec-CCCHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHH----hCCEecCCCCHHHEEeccCCCCCCCeEEEEECcccccc
Confidence 99 99999999987667999999999999999999999 789999999999999987776 999999999877
Q ss_pred CCCCCc-----eeeeccccCccccCCCccCCCCcCcccchhhHHHHHHHHHhCCCCCCccccCcch-HHHHHHhhCCCch
Q 005040 579 GEGEDS-----VIQTMTMATIGYMAPEYGSEGIVSTKCDVYSYGVLLMETFTEKKPTDEMFTGEMS-LRRWVKESLPHRL 652 (717)
Q Consensus 579 ~~~~~~-----~~~~~~~~t~~y~aPE~~~~~~~~~~~Dvws~G~il~el~tg~~p~~~~~~~~~~-~~~~~~~~~~~~~ 652 (717)
...... .......||+.|+|||++.+..++.++||||||+++|||++|+.||......... ....+..
T Consensus 162 ~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Di~slG~il~el~~g~~pf~~~~~~~~~~~~~~~~~------ 235 (298)
T 1csn_A 162 RDPVTKQHIPYREKKNLSGTARYMSINTHLGREQSRRDDLEALGHVFMYFLRGSLPWQGLKAATNKQKYERIGE------ 235 (298)
T ss_dssp BCTTTCCBCCCCCCCCCCSCTTTCCHHHHTTCCCCHHHHHHHHHHHHHHHHHSSCTTSSCCSCCHHHHHHHHHH------
T ss_pred ccccccccccccCccCCCCCcccCCchhhcCCCCChHHHHHHHHHHHHHHHcCCCCcchhhccccHHHHHHHHh------
Confidence 543321 1224456899999999999999999999999999999999999999764322111 0000000
Q ss_pred hhhccccchhhhhhhhhhHHHHHHHHHHHhhccCCCCCCCCCHHHHHHHHHHhHHhhcc
Q 005040 653 TEVVDANLVREEQAFSDKMDCLFSIMDLALDCCMDTPHKRIHMTDAAAKLRKIKAKFLD 711 (717)
Q Consensus 653 ~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~cl~~~P~~Rpt~~ev~~~L~~~~~~~~~ 711 (717)
....... ......++.++.+++.+||+.||++||+++++++.|+++.++...
T Consensus 236 -----~~~~~~~--~~~~~~~~~~l~~li~~~l~~dp~~RP~~~~l~~~l~~~~~~~~~ 287 (298)
T 1csn_A 236 -----KKQSTPL--RELCAGFPEEFYKYMHYARNLAFDATPDYDYLQGLFSKVLERLNT 287 (298)
T ss_dssp -----HHHHSCH--HHHTTTSCHHHHHHHHHHHHCCTTCCCCHHHHHHHHHHHHHHTTC
T ss_pred -----hccCccH--HHHHhhCcHHHHHHHHHHhcCCcccCCCHHHHHHHHHHHHHhcCC
Confidence 0000000 001113456789999999999999999999999999999876543
No 68
>3c0i_A Peripheral plasma membrane protein CASK; neurexin, Ca2+/calmodulin dependent protein kinase, Mg synaptic plasticity, pseudokinase, maguk; HET: 3AM; 1.85A {Homo sapiens} PDB: 3c0h_A* 3c0g_A* 3mfr_A* 3mfs_A* 3mft_A 3mfu_A* 3tac_A
Probab=100.00 E-value=5.1e-41 Score=353.97 Aligned_cols=252 Identities=23% Similarity=0.314 Sum_probs=204.7
Q ss_pred hccCCccccccccccEEEEEEEec-CCCeEEEEEechhhHH-----HHHHHHHHHHHHHhcCCCceeeEeeeeecCCeeE
Q 005040 426 TDEFNECNLLGTGGFGSVYKGTLS-DGTNVAIKIFNLQLER-----AFRSFDSECEILRNVRHRNLLKILGSCSNLDFKA 499 (717)
Q Consensus 426 ~~~~~~~~~lg~G~~g~V~~~~~~-~~~~vavK~~~~~~~~-----~~~~~~~e~~~l~~l~hpniv~~~~~~~~~~~~~ 499 (717)
.++|++.+.||+|+||.||+|..+ +++.||||++...... ..+.+.+|+++++.++||||+++++++.+.+..|
T Consensus 23 ~~~y~~~~~lG~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~~~E~~~l~~l~hpnIv~~~~~~~~~~~~~ 102 (351)
T 3c0i_A 23 EDVYELCEVIGKGPFSVVRRCINRETGQQFAVKIVDVAKFTSSPGLSTEDLKREASICHMLKHPHIVELLETYSSDGMLY 102 (351)
T ss_dssp HHHEEEEEEEEECSSEEEEEEEETTTCCEEEEEEEEHHHHHTSSSCCHHHHHHHHHHHHHCCCTTBCCEEEEEEETTEEE
T ss_pred ccceEEeeEEeeCCCEEEEEEEECCCCCEEEEEEEEhhhccccccchHHHHHHHHHHHHhCCCCCCCcEEEEEEeCCEEE
Confidence 368999999999999999999875 7899999999754321 3467889999999999999999999999999999
Q ss_pred EEEEccCCCCHHHHHhhC---CCCCCHHHHHHHHHHHHHHHHHHhhcCCCCCeEecCCCCCCeeeCCCCc---EEEeeec
Q 005040 500 LVLEFMPNGSLEKWLYSH---NYFLDILQRLNIMIDVGSALEYLHHCHSSAPIIHCDLKPTNILLDENMV---AHVSDFG 573 (717)
Q Consensus 500 lv~e~~~~g~L~~~l~~~---~~~~~~~~~~~i~~~i~~~l~~LH~~~~~~~ivH~dlk~~Nill~~~~~---~kl~Dfg 573 (717)
+||||+++|+|.+++... +..+++..+..++.|++.||.||| +.+|+||||||+||+++.++. +||+|||
T Consensus 103 lv~e~~~g~~L~~~l~~~~~~~~~~~~~~~~~i~~qi~~al~~lH----~~~ivHrDlkp~NIl~~~~~~~~~vkl~Dfg 178 (351)
T 3c0i_A 103 MVFEFMDGADLCFEIVKRADAGFVYSEAVASHYMRQILEALRYCH----DNNIIHRDVKPHCVLLASKENSAPVKLGGFG 178 (351)
T ss_dssp EEEECCSSCBHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHHH----HTTEECSCCSGGGEEECSSSTTCCEEECCCT
T ss_pred EEEeCCCCCCHHHHHHHhcccCCCCCHHHHHHHHHHHHHHHHHHH----HCCceeccCChHHeEEecCCCCCcEEEecCc
Confidence 999999999999888642 345899999999999999999999 678999999999999986654 9999999
Q ss_pred cccccCCCCCceeeeccccCccccCCCccCCCCcCcccchhhHHHHHHHHHhCCCCCCccccCcchHHHHHHhhCCCchh
Q 005040 574 ISKLLGEGEDSVIQTMTMATIGYMAPEYGSEGIVSTKCDVYSYGVLLMETFTEKKPTDEMFTGEMSLRRWVKESLPHRLT 653 (717)
Q Consensus 574 l~~~~~~~~~~~~~~~~~~t~~y~aPE~~~~~~~~~~~Dvws~G~il~el~tg~~p~~~~~~~~~~~~~~~~~~~~~~~~ 653 (717)
++........ ......||+.|+|||++.+..++.++||||+||++|||++|+.||.... ...............
T Consensus 179 ~a~~~~~~~~--~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~~ll~g~~pf~~~~--~~~~~~i~~~~~~~~-- 252 (351)
T 3c0i_A 179 VAIQLGESGL--VAGGRVGTPHFMAPEVVKREPYGKPVDVWGCGVILFILLSGCLPFYGTK--ERLFEGIIKGKYKMN-- 252 (351)
T ss_dssp TCEECCTTSC--BCCCCCSCGGGCCHHHHTTCCBCTHHHHHHHHHHHHHHHHSSCSSCSSH--HHHHHHHHHTCCCCC--
T ss_pred ceeEecCCCe--eecCCcCCcCccCHHHHcCCCCCchHhhHHHHHHHHHHHHCCCCCCCcH--HHHHHHHHcCCCCCC--
Confidence 9987754322 2234579999999999999999999999999999999999999997631 111111111110000
Q ss_pred hhccccchhhhhhhhhhHHHHHHHHHHHhhccCCCCCCCCCHHHHHH
Q 005040 654 EVVDANLVREEQAFSDKMDCLFSIMDLALDCCMDTPHKRIHMTDAAA 700 (717)
Q Consensus 654 ~~~~~~~~~~~~~~~~~~~~~~~l~~li~~cl~~~P~~Rpt~~ev~~ 700 (717)
+ .....++.++.+++.+||+.||++|||+.|+++
T Consensus 253 ----~---------~~~~~~s~~~~~li~~~L~~dP~~R~s~~e~l~ 286 (351)
T 3c0i_A 253 ----P---------RQWSHISESAKDLVRRMLMLDPAERITVYEALN 286 (351)
T ss_dssp ----H---------HHHTTSCHHHHHHHHHHTCSSTTTSCCHHHHHT
T ss_pred ----c---------cccccCCHHHHHHHHHHCCCChhHCcCHHHHhc
Confidence 0 011234567889999999999999999999985
No 69
>3txo_A PKC-L, NPKC-ETA, protein kinase C ETA type; phosphotransferase, transferase-transferase inhibito; HET: TPO 07U; 2.05A {Homo sapiens}
Probab=100.00 E-value=1.3e-41 Score=357.41 Aligned_cols=244 Identities=24% Similarity=0.289 Sum_probs=197.1
Q ss_pred HhccCCccccccccccEEEEEEEec-CCCeEEEEEechhh---HHHHHHHHHHHHHHHhc-CCCceeeEeeeeecCCeeE
Q 005040 425 ATDEFNECNLLGTGGFGSVYKGTLS-DGTNVAIKIFNLQL---ERAFRSFDSECEILRNV-RHRNLLKILGSCSNLDFKA 499 (717)
Q Consensus 425 ~~~~~~~~~~lg~G~~g~V~~~~~~-~~~~vavK~~~~~~---~~~~~~~~~e~~~l~~l-~hpniv~~~~~~~~~~~~~ 499 (717)
..++|++.+.||+|+||.||+|+.+ +++.||+|++.+.. ....+.+.+|.++++.+ +||||+++++++.+.+..|
T Consensus 21 ~~~~y~~~~~lG~G~fg~V~~~~~~~~~~~~AvK~~~~~~~~~~~~~~~~~~E~~il~~~~~hp~Iv~l~~~~~~~~~~~ 100 (353)
T 3txo_A 21 GIDNFEFIRVLGKGSFGKVMLARVKETGDLYAVKVLKKDVILQDDDVECTMTEKRILSLARNHPFLTQLFCCFQTPDRLF 100 (353)
T ss_dssp --CCEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEEHHHHHHHTTHHHHHHHHHHHHHTTTCTTBCCEEEEEECSSEEE
T ss_pred chhheEEEEEEeeCCCEEEEEEEEcCCCCEEEEEEEEHHHhcchhHHHHHHHHHHHHHhccCCCceeeEEEEEEeCCEEE
Confidence 3578999999999999999999976 68999999998653 33446678899999998 7999999999999999999
Q ss_pred EEEEccCCCCHHHHHhhCCCCCCHHHHHHHHHHHHHHHHHHhhcCCCCCeEecCCCCCCeeeCCCCcEEEeeeccccccC
Q 005040 500 LVLEFMPNGSLEKWLYSHNYFLDILQRLNIMIDVGSALEYLHHCHSSAPIIHCDLKPTNILLDENMVAHVSDFGISKLLG 579 (717)
Q Consensus 500 lv~e~~~~g~L~~~l~~~~~~~~~~~~~~i~~~i~~~l~~LH~~~~~~~ivH~dlk~~Nill~~~~~~kl~Dfgl~~~~~ 579 (717)
+||||+++|+|.+++...+ .+++..+..++.|++.||+||| +.+|+||||||+|||++.++++||+|||+++...
T Consensus 101 lv~E~~~gg~L~~~l~~~~-~~~~~~~~~~~~qi~~aL~~LH----~~givHrDlkp~NILl~~~g~ikL~DFG~a~~~~ 175 (353)
T 3txo_A 101 FVMEFVNGGDLMFHIQKSR-RFDEARARFYAAEIISALMFLH----DKGIIYRDLKLDNVLLDHEGHCKLADFGMCKEGI 175 (353)
T ss_dssp EEEECCCSCBHHHHHHHHS-SCCHHHHHHHHHHHHHHHHHHH----HTTCBCCCCCGGGEEECTTSCEEECCCTTCBCSC
T ss_pred EEEeCCCCCcHHHHHHHcC-CCCHHHHHHHHHHHHHHHHHHH----HCCCcccCCCHHHEEECCCCCEEEccccceeecc
Confidence 9999999999999998654 3899999999999999999999 6789999999999999999999999999998643
Q ss_pred CCCCceeeeccccCccccCCCccCCCCcCcccchhhHHHHHHHHHhCCCCCCccccCcchHHHHHHhhCCCchhhhcccc
Q 005040 580 EGEDSVIQTMTMATIGYMAPEYGSEGIVSTKCDVYSYGVLLMETFTEKKPTDEMFTGEMSLRRWVKESLPHRLTEVVDAN 659 (717)
Q Consensus 580 ~~~~~~~~~~~~~t~~y~aPE~~~~~~~~~~~Dvws~G~il~el~tg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 659 (717)
... ......+||+.|+|||++.+..++.++||||+||++|||++|+.||...... .....+... .
T Consensus 176 ~~~--~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~ell~G~~Pf~~~~~~--~~~~~i~~~-----------~ 240 (353)
T 3txo_A 176 CNG--VTTATFCGTPDYIAPEILQEMLYGPAVDWWAMGVLLYEMLCGHAPFEAENED--DLFEAILND-----------E 240 (353)
T ss_dssp C-----------CCGGGCCHHHHHHHHCTTHHHHHHHHHHHHHHHHSSCSSCCSSHH--HHHHHHHHC-----------C
T ss_pred cCC--ccccccCCCcCeEChhhcCCCCcCCccCCCcchHHHHHHHhCCCCCCCCCHH--HHHHHHHcC-----------C
Confidence 222 2234457999999999999889999999999999999999999999763221 111111110 0
Q ss_pred chhhhhhhhhhHHHHHHHHHHHhhccCCCCCCCCCH
Q 005040 660 LVREEQAFSDKMDCLFSIMDLALDCCMDTPHKRIHM 695 (717)
Q Consensus 660 ~~~~~~~~~~~~~~~~~l~~li~~cl~~~P~~Rpt~ 695 (717)
. .+ +..++.++.+++.+||+.||++||++
T Consensus 241 ~-----~~--p~~~~~~~~~li~~lL~~dP~~R~~~ 269 (353)
T 3txo_A 241 V-----VY--PTWLHEDATGILKSFMTKNPTMRLGS 269 (353)
T ss_dssp C-----CC--CTTSCHHHHHHHHHHTCSSGGGSTTS
T ss_pred C-----CC--CCCCCHHHHHHHHHHhhhCHHHccCC
Confidence 0 00 11234567899999999999999998
No 70
>1ob3_A PFPK5, cell division control protein 2 homolog; transferase, serine/threonine-protein kinase, ATP-binding, phosphorylation, CDK; 1.9A {Plasmodium falciparum} SCOP: d.144.1.7 PDB: 1v0p_A* 1v0o_A* 1v0b_A
Probab=100.00 E-value=1.4e-41 Score=348.57 Aligned_cols=266 Identities=23% Similarity=0.297 Sum_probs=202.5
Q ss_pred ccCCccccccccccEEEEEEEecCCCeEEEEEechhh--HHHHHHHHHHHHHHHhcCCCceeeEeeeeecCCeeEEEEEc
Q 005040 427 DEFNECNLLGTGGFGSVYKGTLSDGTNVAIKIFNLQL--ERAFRSFDSECEILRNVRHRNLLKILGSCSNLDFKALVLEF 504 (717)
Q Consensus 427 ~~~~~~~~lg~G~~g~V~~~~~~~~~~vavK~~~~~~--~~~~~~~~~e~~~l~~l~hpniv~~~~~~~~~~~~~lv~e~ 504 (717)
++|++.+.||+|+||.||+|+..+++.||+|++.... ....+.+.+|++++++++||||+++++++.+.+..++||||
T Consensus 2 ~~y~~~~~lg~G~~g~V~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~lv~e~ 81 (288)
T 1ob3_A 2 EKYHGLEKIGEGTYGVVYKAQNNYGETFALKKIRLEKEDEGIPSTTIREISILKELKHSNIVKLYDVIHTKKRLVLVFEH 81 (288)
T ss_dssp CSEEEEEEEEEETTEEEEEEEETTSCEEEEEEECCSSGGGCCCHHHHHHHHGGGGCCCTTBCCEEEEEECSSCEEEEEEC
T ss_pred ccchhhhhcccCCCEEEEEEEcCCCCEEEEEEEeccccccccchhHHHHHHHHHhcCCCCEeeeeeEEccCCeEEEEEEe
Confidence 5789999999999999999999889999999986443 22235678899999999999999999999999999999999
Q ss_pred cCCCCHHHHHhhCCCCCCHHHHHHHHHHHHHHHHHHhhcCCCCCeEecCCCCCCeeeCCCCcEEEeeeccccccCCCCCc
Q 005040 505 MPNGSLEKWLYSHNYFLDILQRLNIMIDVGSALEYLHHCHSSAPIIHCDLKPTNILLDENMVAHVSDFGISKLLGEGEDS 584 (717)
Q Consensus 505 ~~~g~L~~~l~~~~~~~~~~~~~~i~~~i~~~l~~LH~~~~~~~ivH~dlk~~Nill~~~~~~kl~Dfgl~~~~~~~~~~ 584 (717)
+++ +|.+++......+++..+..++.|++.||+||| +.+|+||||||+||+++.++.+||+|||++........
T Consensus 82 ~~~-~l~~~~~~~~~~~~~~~~~~~~~qi~~~l~~lH----~~~i~H~dlkp~Nil~~~~~~~kl~Dfg~~~~~~~~~~- 155 (288)
T 1ob3_A 82 LDQ-DLKKLLDVCEGGLESVTAKSFLLQLLNGIAYCH----DRRVLHRDLKPQNLLINREGELKIADFGLARAFGIPVR- 155 (288)
T ss_dssp CSE-EHHHHHHTSTTCCCHHHHHHHHHHHHHHHHHHH----HTTCCCSCCCGGGEEECTTSCEEECCTTHHHHHCC----
T ss_pred cCC-CHHHHHHhcccCCCHHHHHHHHHHHHHHHHHHH----HCCeecCCCCHHHEEEcCCCCEEEeECccccccCcccc-
Confidence 975 999999877667999999999999999999999 67899999999999999999999999999987643221
Q ss_pred eeeeccccCccccCCCccCC-CCcCcccchhhHHHHHHHHHhCCCCCCccccCcchHHHHHHhhCC---Cchhhh-----
Q 005040 585 VIQTMTMATIGYMAPEYGSE-GIVSTKCDVYSYGVLLMETFTEKKPTDEMFTGEMSLRRWVKESLP---HRLTEV----- 655 (717)
Q Consensus 585 ~~~~~~~~t~~y~aPE~~~~-~~~~~~~Dvws~G~il~el~tg~~p~~~~~~~~~~~~~~~~~~~~---~~~~~~----- 655 (717)
......+|+.|+|||++.+ ..++.++||||+||++|||++|+.||......+ ........... ..+...
T Consensus 156 -~~~~~~~t~~y~aPE~~~~~~~~~~~~DiwslG~il~~l~~g~~pf~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~ 233 (288)
T 1ob3_A 156 -KYTHEIVTLWYRAPDVLMGSKKYSTTIDIWSVGCIFAEMVNGTPLFPGVSEAD-QLMRIFRILGTPNSKNWPNVTELPK 233 (288)
T ss_dssp -------CCCTTCCHHHHTTCCSCCTHHHHHHHHHHHHHHHHSSCSCCCSSHHH-HHHHHHHHHCCCCTTTSTTGGGSTT
T ss_pred -ccccccccccccCchheeCCCCCCcHHHHHHHHHHHHHHHhCCCCCCCCCHHH-HHHHHHHHHCCCChhhchhhhcccc
Confidence 1234468999999998865 458999999999999999999999997642221 12221111110 001100
Q ss_pred ccccchhhh--hhhhhhHHHHHHHHHHHhhccCCCCCCCCCHHHHHH
Q 005040 656 VDANLVREE--QAFSDKMDCLFSIMDLALDCCMDTPHKRIHMTDAAA 700 (717)
Q Consensus 656 ~~~~~~~~~--~~~~~~~~~~~~l~~li~~cl~~~P~~Rpt~~ev~~ 700 (717)
.++.+.... +.......++.++.+++.+||+.||++|||++|+++
T Consensus 234 ~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~Rpt~~e~l~ 280 (288)
T 1ob3_A 234 YDPNFTVYEPLPWESFLKGLDESGIDLLSKMLKLDPNQRITAKQALE 280 (288)
T ss_dssp CCTTCCCCCCCCGGGTCCSCCHHHHHHHHHHTCSSTTTSCCHHHHHT
T ss_pred cccccccccCccHHHHhhhcCHHHHHHHHHHcCCCcccCCCHHHHhc
Confidence 000000000 000001134567889999999999999999999875
No 71
>4euu_A Serine/threonine-protein kinase TBK1; ATP binding, phosphorylation, transferase-transferas inhibitor complex; HET: SEP BX7; 1.80A {Homo sapiens}
Probab=100.00 E-value=9.7e-41 Score=347.67 Aligned_cols=273 Identities=22% Similarity=0.288 Sum_probs=211.7
Q ss_pred hccCCccccccccccEEEEEEEec-CCCeEEEEEechhh-HHHHHHHHHHHHHHHhcCCCceeeEeeeeecCC--eeEEE
Q 005040 426 TDEFNECNLLGTGGFGSVYKGTLS-DGTNVAIKIFNLQL-ERAFRSFDSECEILRNVRHRNLLKILGSCSNLD--FKALV 501 (717)
Q Consensus 426 ~~~~~~~~~lg~G~~g~V~~~~~~-~~~~vavK~~~~~~-~~~~~~~~~e~~~l~~l~hpniv~~~~~~~~~~--~~~lv 501 (717)
.++|++.+.||+|+||.||+|... +++.||||++.... ....+.+.+|++++++++||||+++++++.+.. ..++|
T Consensus 8 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~~~lv 87 (319)
T 4euu_A 8 NHLWLLSDILGQGATANVFRGRHKKTGDLFAIKVFNNISFLRPVDVQMREFEVLKKLNHKNIVKLFAIEEETTTRHKVLI 87 (319)
T ss_dssp SEEEEEEEEEEECSSEEEEEEEETTTCCEEEEEEECGGGGGSCHHHHHHHHHHHHHCCCTTBCCEEEEEECTTTCCEEEE
T ss_pred CCCEEEEEEecCCCCeEEEEEEECCCCcEEEEEEeccccccchHHHHHHHHHHHHhcCCCCcceEEEEeecCCCceEEEE
Confidence 368999999999999999999976 68999999997544 334566789999999999999999999987655 77999
Q ss_pred EEccCCCCHHHHHhhCC--CCCCHHHHHHHHHHHHHHHHHHhhcCCCCCeEecCCCCCCeee----CCCCcEEEeeeccc
Q 005040 502 LEFMPNGSLEKWLYSHN--YFLDILQRLNIMIDVGSALEYLHHCHSSAPIIHCDLKPTNILL----DENMVAHVSDFGIS 575 (717)
Q Consensus 502 ~e~~~~g~L~~~l~~~~--~~~~~~~~~~i~~~i~~~l~~LH~~~~~~~ivH~dlk~~Nill----~~~~~~kl~Dfgl~ 575 (717)
|||+++|+|.+++.... ..+++..+..++.|++.||+||| +.+|+||||||+||++ +.++.+||+|||++
T Consensus 88 ~e~~~~~~L~~~l~~~~~~~~~~~~~~~~i~~qi~~~L~~LH----~~~ivH~Dlkp~NIll~~~~~~~~~~kL~Dfg~a 163 (319)
T 4euu_A 88 MEFCPCGSLYTVLEEPSNAYGLPESEFLIVLRDVVGGMNHLR----ENGIVHRNIKPGNIMRVIGEDGQSVYKLTDFGAA 163 (319)
T ss_dssp EECCTTCBHHHHHHSGGGTTCCCHHHHHHHHHHHHHHHHHHH----HTTEECSCCSGGGEEEEECTTSCEEEEECCCTTC
T ss_pred EeCCCCCCHHHHHHHhccccCCCHHHHHHHHHHHHHHHHHHH----HCCEecCCCCHHHEEEeccCCCCceEEEccCCCc
Confidence 99999999999998643 33899999999999999999999 6789999999999999 78888999999999
Q ss_pred cccCCCCCceeeeccccCccccCCCccC--------CCCcCcccchhhHHHHHHHHHhCCCCCCccccCcc---hHHHHH
Q 005040 576 KLLGEGEDSVIQTMTMATIGYMAPEYGS--------EGIVSTKCDVYSYGVLLMETFTEKKPTDEMFTGEM---SLRRWV 644 (717)
Q Consensus 576 ~~~~~~~~~~~~~~~~~t~~y~aPE~~~--------~~~~~~~~Dvws~G~il~el~tg~~p~~~~~~~~~---~~~~~~ 644 (717)
+....... .....||+.|+|||++. +..++.++|||||||++|||++|+.||........ .+....
T Consensus 164 ~~~~~~~~---~~~~~gt~~y~aPE~~~~~~~~~~~~~~~~~~~DiwslG~il~el~~g~~pf~~~~~~~~~~~~~~~~~ 240 (319)
T 4euu_A 164 RELEDDEQ---FVSLYGTEEYLHPDMYERAVLRKDHQKKYGATVDLWSIGVTFYHAATGSLPFRPFEGPRRNKEVMYKII 240 (319)
T ss_dssp EECCTTCC---BCCCCSCGGGCCHHHHHHHTSCCCCCCCBCTTHHHHHHHHHHHHHHHSSCSEECTTCGGGCHHHHHHHH
T ss_pred eecCCCCc---eeecccCCCccCHHHhhhccccccccCCCCcHHHHHHHHHHHHHHHhCCCCCCCCCccchhHHHHHHHh
Confidence 87754332 23456899999999765 57889999999999999999999999965332222 122222
Q ss_pred HhhCCCchhhhc---cccch---hhhhhhhhhHHHHHHHHHHHhhccCCCCCCCCCHHHHHHHHHHh
Q 005040 645 KESLPHRLTEVV---DANLV---REEQAFSDKMDCLFSIMDLALDCCMDTPHKRIHMTDAAAKLRKI 705 (717)
Q Consensus 645 ~~~~~~~~~~~~---~~~~~---~~~~~~~~~~~~~~~l~~li~~cl~~~P~~Rpt~~ev~~~L~~~ 705 (717)
....+..+..+. ...+. ............+..+.+++.+||+.||++|||++|+++.....
T Consensus 241 ~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~~L~~dP~~R~s~~ell~h~~d~ 307 (319)
T 4euu_A 241 TGKPSGAISGVQKAENGPIDWSGDMPVSCSLSRGLQVLLTPVLANILEADQEKCWGFDQFFAETSDI 307 (319)
T ss_dssp HHCCTTCCEEEECSTTCCEEEESSCCTTCSSCHHHHHHHHHHHHHHSCCCTTTSCCHHHHHHHHHHH
T ss_pred cCCCcccchhhhcccCCccccCccCCcccccchhHHHHhHHHHHHhccCChhhhccHHHhhhccHHH
Confidence 222211111110 00000 00011122345677899999999999999999999999988753
No 72
>4fr4_A YANK1, serine/threonine-protein kinase 32A; structural genomics, structural genomics consortium, SGC, TR; HET: STU; 2.29A {Homo sapiens}
Probab=100.00 E-value=1.3e-40 Score=352.66 Aligned_cols=248 Identities=25% Similarity=0.313 Sum_probs=202.9
Q ss_pred ccCCccccccccccEEEEEEEec-CCCeEEEEEechhh---HHHHHHHHHHHHHHHhcCCCceeeEeeeeecCCeeEEEE
Q 005040 427 DEFNECNLLGTGGFGSVYKGTLS-DGTNVAIKIFNLQL---ERAFRSFDSECEILRNVRHRNLLKILGSCSNLDFKALVL 502 (717)
Q Consensus 427 ~~~~~~~~lg~G~~g~V~~~~~~-~~~~vavK~~~~~~---~~~~~~~~~e~~~l~~l~hpniv~~~~~~~~~~~~~lv~ 502 (717)
++|++.+.||+|+||.||+|... +++.||+|++.... ....+.+.+|+++++.++||||+++++++.+.+..|+||
T Consensus 15 ~~y~i~~~LG~G~fG~V~~~~~~~~~~~~AiK~~~~~~~~~~~~~~~~~~E~~il~~l~hp~Iv~l~~~~~~~~~~~lv~ 94 (384)
T 4fr4_A 15 DHFEILRAIGKGSFGKVCIVQKNDTKKMYAMKYMNKQKCVERNEVRNVFKELQIMQGLEHPFLVNLWYSFQDEEDMFMVV 94 (384)
T ss_dssp GGEEEEEEEECCTTCCEEEEEETTTCCEEEEEEEEHHHHHHTTCHHHHHHHHHHHHTCCCTTBCCEEEEEECSSEEEEEE
T ss_pred HHeEEEEEEeeCCCeEEEEEEECCCCCEEEEEEEehhhcccHHHHHHHHHHHHHHHhCCCCCCCcEEEEEEeCCEEEEEE
Confidence 68999999999999999999976 68899999997653 234467889999999999999999999999999999999
Q ss_pred EccCCCCHHHHHhhCCCCCCHHHHHHHHHHHHHHHHHHhhcCCCCCeEecCCCCCCeeeCCCCcEEEeeeccccccCCCC
Q 005040 503 EFMPNGSLEKWLYSHNYFLDILQRLNIMIDVGSALEYLHHCHSSAPIIHCDLKPTNILLDENMVAHVSDFGISKLLGEGE 582 (717)
Q Consensus 503 e~~~~g~L~~~l~~~~~~~~~~~~~~i~~~i~~~l~~LH~~~~~~~ivH~dlk~~Nill~~~~~~kl~Dfgl~~~~~~~~ 582 (717)
||+.+|+|.+++.... .+++..+..++.|++.||.||| +.+|+||||||+||+++.++.+||+|||++.......
T Consensus 95 e~~~gg~L~~~l~~~~-~l~~~~~~~~~~qi~~aL~~LH----~~givHrDlkp~NIll~~~g~vkL~DFG~a~~~~~~~ 169 (384)
T 4fr4_A 95 DLLLGGDLRYHLQQNV-HFKEETVKLFICELVMALDYLQ----NQRIIHRDMKPDNILLDEHGHVHITDFNIAAMLPRET 169 (384)
T ss_dssp CCCTTEEHHHHHHTTC-CCCHHHHHHHHHHHHHHHHHHH----HTTEECCCCSGGGEEECTTSCEEECCCTTCEECCTTC
T ss_pred ecCCCCcHHHHHHhcC-CCCHHHHHHHHHHHHHHHHHHH----HCCceeccCcHHHeEECCCCCEEEeccceeeeccCCC
Confidence 9999999999998754 4899999999999999999999 6789999999999999999999999999998764332
Q ss_pred CceeeeccccCccccCCCccCC---CCcCcccchhhHHHHHHHHHhCCCCCCccccCcc-hHHHHHHhhCCCchhhhccc
Q 005040 583 DSVIQTMTMATIGYMAPEYGSE---GIVSTKCDVYSYGVLLMETFTEKKPTDEMFTGEM-SLRRWVKESLPHRLTEVVDA 658 (717)
Q Consensus 583 ~~~~~~~~~~t~~y~aPE~~~~---~~~~~~~Dvws~G~il~el~tg~~p~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~ 658 (717)
.....+||+.|+|||++.+ ..++.++||||+||++|||++|+.||........ ...........
T Consensus 170 ---~~~~~~gt~~Y~aPE~~~~~~~~~~~~~~DiwSlG~il~elltG~~Pf~~~~~~~~~~~~~~~~~~~~--------- 237 (384)
T 4fr4_A 170 ---QITTMAGTKPYMAPEMFSSRKGAGYSFAVDWWSLGVTAYELLRGRRPYHIRSSTSSKEIVHTFETTVV--------- 237 (384)
T ss_dssp ---CBCCCCSCGGGCCGGGTCCCSSCCBCTTHHHHHHHHHHHHHHHSSCSSCCCTTSCHHHHHHHHHHCCC---------
T ss_pred ---ceeccCCCccccCCeeeccCCCCCCCccceeechHHHHHHHHhCCCCCCCCCCccHHHHHHHHhhccc---------
Confidence 2244579999999998863 4589999999999999999999999975322211 11111111000
Q ss_pred cchhhhhhhhhhHHHHHHHHHHHhhccCCCCCCCCC-HHHHHH
Q 005040 659 NLVREEQAFSDKMDCLFSIMDLALDCCMDTPHKRIH-MTDAAA 700 (717)
Q Consensus 659 ~~~~~~~~~~~~~~~~~~l~~li~~cl~~~P~~Rpt-~~ev~~ 700 (717)
..+..++.++.+++.+||+.||++||+ ++++.+
T Consensus 238 ---------~~p~~~s~~~~~li~~lL~~dP~~R~s~~~~l~~ 271 (384)
T 4fr4_A 238 ---------TYPSAWSQEMVSLLKKLLEPNPDQRFSQLSDVQN 271 (384)
T ss_dssp ---------CCCTTSCHHHHHHHHHHSCSSGGGSCCSHHHHHT
T ss_pred ---------CCCCcCCHHHHHHHHHHhcCCHhHhcccHHHHHc
Confidence 011133466889999999999999998 666543
No 73
>3h4j_B AMPK kdaid, SNF1-like protein kinase SSP2; ATP-binding, nucleotide-binding, phosphoprotei serine/threonine-protein kinase, transferase; 2.80A {Schizosaccharomyces pombe}
Probab=100.00 E-value=2.1e-41 Score=353.14 Aligned_cols=246 Identities=24% Similarity=0.367 Sum_probs=202.3
Q ss_pred hccCCccccccccccEEEEEEEe-cCCCeEEEEEechhhH---HHHHHHHHHHHHHHhcCCCceeeEeeeeecCCeeEEE
Q 005040 426 TDEFNECNLLGTGGFGSVYKGTL-SDGTNVAIKIFNLQLE---RAFRSFDSECEILRNVRHRNLLKILGSCSNLDFKALV 501 (717)
Q Consensus 426 ~~~~~~~~~lg~G~~g~V~~~~~-~~~~~vavK~~~~~~~---~~~~~~~~e~~~l~~l~hpniv~~~~~~~~~~~~~lv 501 (717)
.++|.+.+.||+|+||.||+|.+ .+++.||+|++..... .....+.+|+++++.++||||+++++++.+....++|
T Consensus 8 i~~Y~i~~~lG~G~~g~V~~a~~~~~~~~vaiK~~~~~~~~~~~~~~~~~~E~~~l~~l~hpnIv~l~~~~~~~~~~~lv 87 (336)
T 3h4j_B 8 IGPYIIRETLGEGSFGKVKLATHYKTQQKVALKFISRQLLKKSDMHMRVEREISYLKLLRHPHIIKLYDVITTPTDIVMV 87 (336)
T ss_dssp ETTEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEEHHHHHHTTCSHHHHHHHHHHTTCCCTTBCCEEEEEECSSEEEEE
T ss_pred cCCEEEEEEEecCCCeEEEEEEECCCCCEEEEEEEehHHccchhHHHHHHHHHHHHHhCCCCCCCeEEEEEEeCCEEEEE
Confidence 36899999999999999999997 4889999999976532 2235688999999999999999999999999999999
Q ss_pred EEccCCCCHHHHHhhCCCCCCHHHHHHHHHHHHHHHHHHhhcCCCCCeEecCCCCCCeeeCCCCcEEEeeeccccccCCC
Q 005040 502 LEFMPNGSLEKWLYSHNYFLDILQRLNIMIDVGSALEYLHHCHSSAPIIHCDLKPTNILLDENMVAHVSDFGISKLLGEG 581 (717)
Q Consensus 502 ~e~~~~g~L~~~l~~~~~~~~~~~~~~i~~~i~~~l~~LH~~~~~~~ivH~dlk~~Nill~~~~~~kl~Dfgl~~~~~~~ 581 (717)
|||+ +|+|.+++.... .+++..+..++.|++.||.||| +.+|+||||||+||+++.++.+||+|||++......
T Consensus 88 ~E~~-~g~l~~~l~~~~-~l~~~~~~~i~~qi~~aL~~LH----~~givH~Dlkp~NIll~~~~~~kl~DFG~s~~~~~~ 161 (336)
T 3h4j_B 88 IEYA-GGELFDYIVEKK-RMTEDEGRRFFQQIICAIEYCH----RHKIVHRDLKPENLLLDDNLNVKIADFGLSNIMTDG 161 (336)
T ss_dssp ECCC-CEEHHHHHHHHC-SCCHHHHHHHHHHHHHHHHHHH----HHTCCCCCCSTTTEEECTTCCEEECCSSCTBTTTTS
T ss_pred EECC-CCcHHHHHHHcC-CCCHHHHHHHHHHHHHHHHHHH----HCCeEecCCchhhEEEcCCCCEEEEEeccceeccCC
Confidence 9999 689999987654 3899999999999999999999 578999999999999999999999999999876443
Q ss_pred CCceeeeccccCccccCCCccCCCCc-CcccchhhHHHHHHHHHhCCCCCCccccCcchHHHHHHhhCCCchhhhccccc
Q 005040 582 EDSVIQTMTMATIGYMAPEYGSEGIV-STKCDVYSYGVLLMETFTEKKPTDEMFTGEMSLRRWVKESLPHRLTEVVDANL 660 (717)
Q Consensus 582 ~~~~~~~~~~~t~~y~aPE~~~~~~~-~~~~Dvws~G~il~el~tg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 660 (717)
.. ....+||+.|+|||++.+..+ +.++||||+||++|||++|+.||.+...... ...+.....
T Consensus 162 ~~---~~~~~gt~~y~aPE~~~~~~~~~~~~DiwslG~il~~ll~g~~Pf~~~~~~~~-------------~~~i~~~~~ 225 (336)
T 3h4j_B 162 NF---LKTSCGSPNYAAPEVINGKLYAGPEVDVWSCGIVLYVMLVGRLPFDDEFIPNL-------------FKKVNSCVY 225 (336)
T ss_dssp BT---TCCCTTSTTTSCGGGSCCSGGGCHHHHHHHHHHHHHHHHHSSCSSBCSSSTTC-------------BCCCCSSCC
T ss_pred cc---cccccCCcCcCCHHHHcCCCCCCCccchhHHHHHHHHHHhCCCCCCCccHHHH-------------HHHHHcCCC
Confidence 22 234579999999999988776 7899999999999999999999975322110 000000000
Q ss_pred hhhhhhhhhhHHHHHHHHHHHhhccCCCCCCCCCHHHHHH
Q 005040 661 VREEQAFSDKMDCLFSIMDLALDCCMDTPHKRIHMTDAAA 700 (717)
Q Consensus 661 ~~~~~~~~~~~~~~~~l~~li~~cl~~~P~~Rpt~~ev~~ 700 (717)
..+..++.++.+++.+||+.||.+|||++|+++
T Consensus 226 -------~~p~~~s~~~~~li~~~L~~dP~~Rpt~~eil~ 258 (336)
T 3h4j_B 226 -------VMPDFLSPGAQSLIRRMIVADPMQRITIQEIRR 258 (336)
T ss_dssp -------CCCTTSCHHHHHHHHTTSCSSGGGSCCHHHHTT
T ss_pred -------CCcccCCHHHHHHHHHHcCCChhHCcCHHHHHh
Confidence 011123456889999999999999999999976
No 74
>3o0g_A Cell division protein kinase 5; kinase activator complex, kinase inhibitor complex, transferase-transferase activator complex; HET: 3O0; 1.95A {Homo sapiens} SCOP: d.144.1.7 PDB: 1unh_A* 1ung_A* 1unl_A* 1h4l_A
Probab=100.00 E-value=3.6e-41 Score=346.30 Aligned_cols=267 Identities=21% Similarity=0.258 Sum_probs=204.9
Q ss_pred ccCCccccccccccEEEEEEEec-CCCeEEEEEechhh--HHHHHHHHHHHHHHHhcCCCceeeEeeeeecCCeeEEEEE
Q 005040 427 DEFNECNLLGTGGFGSVYKGTLS-DGTNVAIKIFNLQL--ERAFRSFDSECEILRNVRHRNLLKILGSCSNLDFKALVLE 503 (717)
Q Consensus 427 ~~~~~~~~lg~G~~g~V~~~~~~-~~~~vavK~~~~~~--~~~~~~~~~e~~~l~~l~hpniv~~~~~~~~~~~~~lv~e 503 (717)
++|++.+.||+|+||+||+|... +++.||+|++.... ....+.+.+|++++++++||||+++++++.+.+..++|||
T Consensus 2 ~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~lv~e 81 (292)
T 3o0g_A 2 QKYEKLEKIGEGTYGTVFKAKNRETHEIVALKRVRLDDDDEGVPSSALREICLLKELKHKNIVRLHDVLHSDKKLTLVFE 81 (292)
T ss_dssp CSEEEEEEEEECSSSEEEEEEETTTCCEEEEEEEESSCSSTTHHHHHHHHHHHHTTCCCTTBCCEEEEEEETTEEEEEEE
T ss_pred CCceeeeEecCCCCeEEEEEEECCCCceEEEEeeeccCCcCCcchHHHHHHHHHhcCCCCCEeeEEeEEEeCCEEEEEEe
Confidence 57899999999999999999975 78999999986443 3344678889999999999999999999999999999999
Q ss_pred ccCCCCHHHHHhhCCCCCCHHHHHHHHHHHHHHHHHHhhcCCCCCeEecCCCCCCeeeCCCCcEEEeeeccccccCCCCC
Q 005040 504 FMPNGSLEKWLYSHNYFLDILQRLNIMIDVGSALEYLHHCHSSAPIIHCDLKPTNILLDENMVAHVSDFGISKLLGEGED 583 (717)
Q Consensus 504 ~~~~g~L~~~l~~~~~~~~~~~~~~i~~~i~~~l~~LH~~~~~~~ivH~dlk~~Nill~~~~~~kl~Dfgl~~~~~~~~~ 583 (717)
|+++ ++.+++......+++..+..++.|++.||+||| +.+|+||||||+||+++.++.+||+|||++........
T Consensus 82 ~~~~-~l~~~~~~~~~~l~~~~~~~~~~ql~~~l~~lH----~~~ivH~dikp~Nil~~~~~~~kl~Dfg~~~~~~~~~~ 156 (292)
T 3o0g_A 82 FCDQ-DLKKYFDSCNGDLDPEIVKSFLFQLLKGLGFCH----SRNVLHRDLKPQNLLINRNGELKLANFGLARAFGIPVR 156 (292)
T ss_dssp CCSE-EHHHHHHHTTTCCCHHHHHHHHHHHHHHHHHHH----HTTEECCCCSGGGEEECTTSCEEECCCTTCEECCSCCS
T ss_pred cCCC-CHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHH----hCCeecCCCCHHHEEEcCCCCEEEeecccceecCCccc
Confidence 9975 777777766667999999999999999999999 67899999999999999999999999999987643222
Q ss_pred ceeeeccccCccccCCCccCCCC-cCcccchhhHHHHHHHHHhCCCCCCccccCcchHHHHHHhhCCC---chhhhcc--
Q 005040 584 SVIQTMTMATIGYMAPEYGSEGI-VSTKCDVYSYGVLLMETFTEKKPTDEMFTGEMSLRRWVKESLPH---RLTEVVD-- 657 (717)
Q Consensus 584 ~~~~~~~~~t~~y~aPE~~~~~~-~~~~~Dvws~G~il~el~tg~~p~~~~~~~~~~~~~~~~~~~~~---~~~~~~~-- 657 (717)
......||+.|+|||++.+.. ++.++||||+||++|||++|+.||.........+.......... .+.....
T Consensus 157 --~~~~~~~t~~y~aPE~~~~~~~~~~~~DiwslG~il~~l~~~~~p~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~ 234 (292)
T 3o0g_A 157 --CYSAEVVTLWYRPPDVLFGAKLYSTSIDMWSAGCIFAELANAGRPLFPGNDVDDQLKRIFRLLGTPTEEQWPSMTKLP 234 (292)
T ss_dssp --CCCSCCSCGGGCCHHHHTTCSCCCTHHHHHHHHHHHHHHTTTSCCSCCCSSHHHHHHHHHHHHCCCCTTTCTTGGGST
T ss_pred --cccCCccccCCcChHHHcCCCCcCchHHHHHHHHHHHHHHHcCCCCcCCCCHHHHHHHHHHHhCCCChhhhhhhcccc
Confidence 224456899999999887665 89999999999999999999888643222222222222221111 1111000
Q ss_pred -c----cchhhhhhhhhhHHHHHHHHHHHhhccCCCCCCCCCHHHHHH
Q 005040 658 -A----NLVREEQAFSDKMDCLFSIMDLALDCCMDTPHKRIHMTDAAA 700 (717)
Q Consensus 658 -~----~~~~~~~~~~~~~~~~~~l~~li~~cl~~~P~~Rpt~~ev~~ 700 (717)
. ..............++.++.+++.+||+.||++|||++|+++
T Consensus 235 ~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~R~t~~e~l~ 282 (292)
T 3o0g_A 235 DYKPYPMYPATTSLVNVVPKLNATGRDLLQNLLKCNPVQRISAEEALQ 282 (292)
T ss_dssp TCCCCCCCCTTCCCTTTSTTCCHHHHHHHHHHSCSSGGGSCCHHHHHT
T ss_pred cccccccccCCcchhhcccccChHHHHHHHHHhccChhhCCCHHHHhc
Confidence 0 000000000111234567889999999999999999999976
No 75
>3qup_A Tyrosine-protein kinase receptor TYRO3; protein kinase inhibitor, receptor tyrosine kinase, spirocyc kinase domain, phosphotransfer, GAS6 ligand; HET: LUN; 1.90A {Mus musculus}
Probab=100.00 E-value=1.3e-41 Score=354.98 Aligned_cols=260 Identities=24% Similarity=0.450 Sum_probs=195.6
Q ss_pred HhccCCccccccccccEEEEEEEecC-C---CeEEEEEechhh--HHHHHHHHHHHHHHHhcCCCceeeEeeeeecCCee
Q 005040 425 ATDEFNECNLLGTGGFGSVYKGTLSD-G---TNVAIKIFNLQL--ERAFRSFDSECEILRNVRHRNLLKILGSCSNLDFK 498 (717)
Q Consensus 425 ~~~~~~~~~~lg~G~~g~V~~~~~~~-~---~~vavK~~~~~~--~~~~~~~~~e~~~l~~l~hpniv~~~~~~~~~~~~ 498 (717)
..++|++.+.||+|+||.||+|.+.. + ..||||++.... ....+.+.+|++++++++||||+++++++.+....
T Consensus 21 ~~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~ 100 (323)
T 3qup_A 21 PEQQFTLGRMLGKGEFGSVREAQLKQEDGSFVKVAVKMLKADIIASSDIEEFLREAACMKEFDHPHVAKLVGVSLRSRAK 100 (323)
T ss_dssp C---CEEEEEEEEETTEEEEEEEC-------CEEEEEEC------CHHHHHHHHHHHHHTTCCCTTBCCCCEEEECC---
T ss_pred ChhHeEEeceecccCCeEEEEEEEcccCCcceeEEEEEecccccCHHHHHHHHHHHHHHHHCCCCceehhhceeeccccc
Confidence 34689999999999999999998753 3 279999997652 34567789999999999999999999999776655
Q ss_pred ------EEEEEccCCCCHHHHHhhC-----CCCCCHHHHHHHHHHHHHHHHHHhhcCCCCCeEecCCCCCCeeeCCCCcE
Q 005040 499 ------ALVLEFMPNGSLEKWLYSH-----NYFLDILQRLNIMIDVGSALEYLHHCHSSAPIIHCDLKPTNILLDENMVA 567 (717)
Q Consensus 499 ------~lv~e~~~~g~L~~~l~~~-----~~~~~~~~~~~i~~~i~~~l~~LH~~~~~~~ivH~dlk~~Nill~~~~~~ 567 (717)
++||||+++|+|.+++... ...+++..+..++.|+++||+||| +.+|+||||||+||+++.++.+
T Consensus 101 ~~~~~~~~v~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~i~~qi~~al~~LH----~~~ivH~Dikp~NIli~~~~~~ 176 (323)
T 3qup_A 101 GRLPIPMVILPFMKHGDLHAFLLASRIGENPFNLPLQTLVRFMVDIACGMEYLS----SRNFIHRDLAARNCMLAEDMTV 176 (323)
T ss_dssp ----CEEEEEECCTTCBHHHHHHHHHC---CCCCCHHHHHHHHHHHHHHHHHHH----HTTCCCSCCSGGGEEECTTSCE
T ss_pred cCCCccEEEEEeccCCcHHHHHHhhhccccccccCHHHHHHHHHHHHHHHHHHH----cCCcccCCCCcceEEEcCCCCE
Confidence 9999999999999999743 225899999999999999999999 6789999999999999999999
Q ss_pred EEeeeccccccCCCCCceeeeccccCccccCCCccCCCCcCcccchhhHHHHHHHHHh-CCCCCCccccCcchHHHHHHh
Q 005040 568 HVSDFGISKLLGEGEDSVIQTMTMATIGYMAPEYGSEGIVSTKCDVYSYGVLLMETFT-EKKPTDEMFTGEMSLRRWVKE 646 (717)
Q Consensus 568 kl~Dfgl~~~~~~~~~~~~~~~~~~t~~y~aPE~~~~~~~~~~~Dvws~G~il~el~t-g~~p~~~~~~~~~~~~~~~~~ 646 (717)
||+|||+++...............+|+.|+|||.+.+..++.++||||||+++|||++ |+.||...... .....+..
T Consensus 177 kl~Dfg~a~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~ell~~g~~p~~~~~~~--~~~~~~~~ 254 (323)
T 3qup_A 177 CVADFGLSRKIYSGDYYRQGCASKLPVKWLALESLADNLYTVHSDVWAFGVTMWEIMTRGQTPYAGIENA--EIYNYLIG 254 (323)
T ss_dssp EECCCCC-----------------CCGGGCCHHHHHHCCCCHHHHHHHHHHHHHHHHTTSCCTTTTCCGG--GHHHHHHT
T ss_pred EEeeccccccccccccccccccccCcccccCchhhcCCCCCCccchhhHHHHHHHHHhCCCCCccccChH--HHHHHHhc
Confidence 9999999987654443333334457889999999998899999999999999999999 99999764322 11111111
Q ss_pred hCCCchhhhccccchhhhhhhhhhHHHHHHHHHHHhhccCCCCCCCCCHHHHHHHHHHhHH
Q 005040 647 SLPHRLTEVVDANLVREEQAFSDKMDCLFSIMDLALDCCMDTPHKRIHMTDAAAKLRKIKA 707 (717)
Q Consensus 647 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~cl~~~P~~Rpt~~ev~~~L~~~~~ 707 (717)
... ......++.++.+++.+||+.||++|||+.++++.|+++.+
T Consensus 255 ~~~-----------------~~~~~~~~~~l~~li~~~l~~dp~~Rps~~~l~~~l~~~l~ 298 (323)
T 3qup_A 255 GNR-----------------LKQPPECMEEVYDLMYQCWSADPKQRPSFTCLRMELENILG 298 (323)
T ss_dssp TCC-----------------CCCCTTCCHHHHHHHHHTTCSSGGGSCCHHHHHHHHHHHHH
T ss_pred CCC-----------------CCCCCccCHHHHHHHHHHccCChhhCcCHHHHHHHHHHHHH
Confidence 100 00112344668899999999999999999999999999865
No 76
>2eva_A TAK1 kinase - TAB1 chimera fusion protein; transferase/transferase activator complex; HET: ADN; 2.00A {Homo sapiens}
Probab=100.00 E-value=7.2e-41 Score=346.36 Aligned_cols=257 Identities=27% Similarity=0.407 Sum_probs=202.7
Q ss_pred ccCCccccccccccEEEEEEEecCCCeEEEEEechhhHHHHHHHHHHHHHHHhcCCCceeeEeeeeecCCeeEEEEEccC
Q 005040 427 DEFNECNLLGTGGFGSVYKGTLSDGTNVAIKIFNLQLERAFRSFDSECEILRNVRHRNLLKILGSCSNLDFKALVLEFMP 506 (717)
Q Consensus 427 ~~~~~~~~lg~G~~g~V~~~~~~~~~~vavK~~~~~~~~~~~~~~~e~~~l~~l~hpniv~~~~~~~~~~~~~lv~e~~~ 506 (717)
++|++.+.||+|+||.||+|++. ++.||+|++.... ..+.+.+|++++++++||||+++++++.+ ..++||||++
T Consensus 8 ~~~~~~~~lg~G~~g~V~~~~~~-~~~vavK~~~~~~--~~~~~~~E~~~l~~l~hp~iv~~~~~~~~--~~~lv~e~~~ 82 (307)
T 2eva_A 8 KEIEVEEVVGRGAFGVVCKAKWR-AKDVAIKQIESES--ERKAFIVELRQLSRVNHPNIVKLYGACLN--PVCLVMEYAE 82 (307)
T ss_dssp GGEEEEEEEECCSSSEEEEEEET-TEEEEEEECSSTT--HHHHHHHHHHHHHHCCCTTBCCEEEBCTT--TTEEEEECCT
T ss_pred hHeeeeeEeecCCCceEEEEEEC-CeeEEEEEecChh--HHHHHHHHHHHHhcCCCCCcCeEEEEEcC--CcEEEEEcCC
Confidence 67889999999999999999984 7889999986442 34678899999999999999999999874 4799999999
Q ss_pred CCCHHHHHhhCCC--CCCHHHHHHHHHHHHHHHHHHhhcCCCCCeEecCCCCCCeeeCCCCc-EEEeeeccccccCCCCC
Q 005040 507 NGSLEKWLYSHNY--FLDILQRLNIMIDVGSALEYLHHCHSSAPIIHCDLKPTNILLDENMV-AHVSDFGISKLLGEGED 583 (717)
Q Consensus 507 ~g~L~~~l~~~~~--~~~~~~~~~i~~~i~~~l~~LH~~~~~~~ivH~dlk~~Nill~~~~~-~kl~Dfgl~~~~~~~~~ 583 (717)
+|+|.+++..... .+++..+..++.|+++||+|||+.+ ..+|+||||||+||+++.++. +||+|||++......
T Consensus 83 ~~~L~~~l~~~~~~~~~~~~~~~~~~~qi~~~l~~LH~~~-~~~ivH~dlkp~NIll~~~~~~~kl~Dfg~~~~~~~~-- 159 (307)
T 2eva_A 83 GGSLYNVLHGAEPLPYYTAAHAMSWCLQCSQGVAYLHSMQ-PKALIHRDLKPPNLLLVAGGTVLKICDFGTACDIQTH-- 159 (307)
T ss_dssp TCBHHHHHHCSSSEECCCHHHHHHHHHHHHHHHHHHHTCS-SSCCCCCCCSGGGEEEETTTTEEEECCCCC---------
T ss_pred CCCHHHHHhccCCCCccCHHHHHHHHHHHHHHHHHHHhCC-CCCeecCCCChhHEEEeCCCCEEEEcccccccccccc--
Confidence 9999999986542 4788999999999999999999533 278999999999999998886 799999999765432
Q ss_pred ceeeeccccCccccCCCccCCCCcCcccchhhHHHHHHHHHhCCCCCCccccCcchHHHHHHhhCCCchhhhccccchhh
Q 005040 584 SVIQTMTMATIGYMAPEYGSEGIVSTKCDVYSYGVLLMETFTEKKPTDEMFTGEMSLRRWVKESLPHRLTEVVDANLVRE 663 (717)
Q Consensus 584 ~~~~~~~~~t~~y~aPE~~~~~~~~~~~Dvws~G~il~el~tg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 663 (717)
.....||+.|+|||++.+..++.++||||||+++|||++|+.||.....................
T Consensus 160 ---~~~~~gt~~y~aPE~~~~~~~~~~~Di~slG~il~el~~g~~p~~~~~~~~~~~~~~~~~~~~~~------------ 224 (307)
T 2eva_A 160 ---MTNNKGSAAWMAPEVFEGSNYSEKCDVFSWGIILWEVITRRKPFDEIGGPAFRIMWAVHNGTRPP------------ 224 (307)
T ss_dssp --------CCTTSSCHHHHTCCCCCTHHHHHHHHHHHHHHHHTCCTTTTTCSSHHHHHHHHHTTCCCC------------
T ss_pred ---cccCCCCCceEChhhhCCCCCCcHHHHHHHHHHHHHHHHCCCCchhhCccHHHHHHHHhcCCCCC------------
Confidence 12345899999999999999999999999999999999999999753322211111111110000
Q ss_pred hhhhhhhHHHHHHHHHHHhhccCCCCCCCCCHHHHHHHHHHhHHhhcc
Q 005040 664 EQAFSDKMDCLFSIMDLALDCCMDTPHKRIHMTDAAAKLRKIKAKFLD 711 (717)
Q Consensus 664 ~~~~~~~~~~~~~l~~li~~cl~~~P~~Rpt~~ev~~~L~~~~~~~~~ 711 (717)
....++..+.+++.+||+.||++|||+.|+++.|+++.+.+++
T Consensus 225 -----~~~~~~~~l~~li~~~l~~dp~~Rps~~ell~~L~~~~~~~~~ 267 (307)
T 2eva_A 225 -----LIKNLPKPIESLMTRCWSKDPSQRPSMEEIVKIMTHLMRYFPG 267 (307)
T ss_dssp -----CBTTCCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHGGGCCC
T ss_pred -----cccccCHHHHHHHHHHhcCChhhCcCHHHHHHHHHHHHHhccC
Confidence 0113345688999999999999999999999999999877654
No 77
>4dc2_A Protein kinase C IOTA type; kinase, substrate, cell polarity, atypical PKC, trans transferase substrate complex; HET: TPO ADE; 2.40A {Mus musculus}
Probab=100.00 E-value=3e-41 Score=358.61 Aligned_cols=249 Identities=18% Similarity=0.248 Sum_probs=199.0
Q ss_pred hccCCccccccccccEEEEEEEec-CCCeEEEEEechhh---HHHHHHHHHHHHHHHhc-CCCceeeEeeeeecCCeeEE
Q 005040 426 TDEFNECNLLGTGGFGSVYKGTLS-DGTNVAIKIFNLQL---ERAFRSFDSECEILRNV-RHRNLLKILGSCSNLDFKAL 500 (717)
Q Consensus 426 ~~~~~~~~~lg~G~~g~V~~~~~~-~~~~vavK~~~~~~---~~~~~~~~~e~~~l~~l-~hpniv~~~~~~~~~~~~~l 500 (717)
.++|++.+.||+|+||.||+|+.+ +++.||+|++++.. ....+.+..|..+++++ +||||+++++++.+.+..|+
T Consensus 51 ~~~y~~~~~LG~G~fG~V~~~~~~~~~~~~AvK~~~k~~~~~~~~~~~~~~E~~il~~~~~hp~Iv~l~~~~~~~~~~~l 130 (396)
T 4dc2_A 51 LQDFDLLRVIGRGSYAKVLLVRLKKTDRIYAMRVVKKELVNDDEDIDWVQTEKHVFEQASNHPFLVGLHSCFQTESRLFF 130 (396)
T ss_dssp GGGEEEEEEEEECSSEEEEEEEETTTTEEEEEEEEEGGGTC----CCHHHHHHHHHHHHTTCTTBCCEEEEEECSSEEEE
T ss_pred hhHcEEEEEEeeCCCeEEEEEEECCCCCEEEEEEEEhhhccCHHHHHHHHHHHHHHHhcCCCCCcCeeEEEEEECCEEEE
Confidence 478999999999999999999976 68899999997653 22334578899999887 89999999999999999999
Q ss_pred EEEccCCCCHHHHHhhCCCCCCHHHHHHHHHHHHHHHHHHhhcCCCCCeEecCCCCCCeeeCCCCcEEEeeeccccccCC
Q 005040 501 VLEFMPNGSLEKWLYSHNYFLDILQRLNIMIDVGSALEYLHHCHSSAPIIHCDLKPTNILLDENMVAHVSDFGISKLLGE 580 (717)
Q Consensus 501 v~e~~~~g~L~~~l~~~~~~~~~~~~~~i~~~i~~~l~~LH~~~~~~~ivH~dlk~~Nill~~~~~~kl~Dfgl~~~~~~ 580 (717)
||||+++|+|.+++...+ .+++..+..++.||+.||.||| +.+|+||||||+|||++.++++||+|||+++....
T Consensus 131 V~E~~~gg~L~~~l~~~~-~l~~~~~~~~~~qi~~aL~~LH----~~givHrDLKp~NILl~~~g~ikL~DFGla~~~~~ 205 (396)
T 4dc2_A 131 VIEYVNGGDLMFHMQRQR-KLPEEHARFYSAEISLALNYLH----ERGIIYRDLKLDNVLLDSEGHIKLTDYGMCKEGLR 205 (396)
T ss_dssp EEECCTTCBHHHHHHHHS-SCCHHHHHHHHHHHHHHHHHHH----HTTCBCCCCCGGGEEECTTSCEEECCCTTCBCCCC
T ss_pred EEEcCCCCcHHHHHHHcC-CCCHHHHHHHHHHHHHHHHHHH----HCCEEeccCCHHHEEECCCCCEEEeecceeeeccc
Confidence 999999999999998654 4899999999999999999999 67899999999999999999999999999986332
Q ss_pred CCCceeeeccccCccccCCCccCCCCcCcccchhhHHHHHHHHHhCCCCCCccccCcch---HHHHHHhhCCCchhhhcc
Q 005040 581 GEDSVIQTMTMATIGYMAPEYGSEGIVSTKCDVYSYGVLLMETFTEKKPTDEMFTGEMS---LRRWVKESLPHRLTEVVD 657 (717)
Q Consensus 581 ~~~~~~~~~~~~t~~y~aPE~~~~~~~~~~~Dvws~G~il~el~tg~~p~~~~~~~~~~---~~~~~~~~~~~~~~~~~~ 657 (717)
.. ......+||+.|+|||++.+..++.++||||+||++|||++|+.||......+.. ...+... .+..
T Consensus 206 ~~--~~~~~~~gt~~Y~aPE~l~~~~~~~~~DiwslGvllyell~G~~Pf~~~~~~~~~~~~~~~~~~~-------~i~~ 276 (396)
T 4dc2_A 206 PG--DTTSTFCGTPNYIAPEILRGEDYGFSVDWWALGVLMFEMMAGRSPFDIVGSSDNPDQNTEDYLFQ-------VILE 276 (396)
T ss_dssp TT--CCBCCCCBCGGGCCHHHHTTCCBCTHHHHHHHHHHHHHHHHSSCSSTTTTC------CCHHHHHH-------HHHH
T ss_pred CC--CccccccCCcccCCchhhcCCCCChHHHHHHHHHHHHHHHhCCCCCcccccccccchhhHHHHHH-------HHhc
Confidence 22 1234567999999999999999999999999999999999999999643211100 0000000 0000
Q ss_pred ccchhhhhhhhhhHHHHHHHHHHHhhccCCCCCCCCCH
Q 005040 658 ANLVREEQAFSDKMDCLFSIMDLALDCCMDTPHKRIHM 695 (717)
Q Consensus 658 ~~~~~~~~~~~~~~~~~~~l~~li~~cl~~~P~~Rpt~ 695 (717)
.. .. .+..++.++.+++.+||+.||++||++
T Consensus 277 ~~-----~~--~p~~~s~~~~~li~~lL~~dP~~R~~~ 307 (396)
T 4dc2_A 277 KQ-----IR--IPRSLSVKAASVLKSFLNKDPKERLGC 307 (396)
T ss_dssp CC-----CC--CCTTSCHHHHHHHHHHTCSCTTTSTTC
T ss_pred cc-----cC--CCCcCCHHHHHHHHHHhcCCHhHcCCC
Confidence 00 00 111345668899999999999999996
No 78
>2y0a_A Death-associated protein kinase 1; transferase, calmodulin, esprit; HET: MES; 2.60A {Homo sapiens}
Probab=100.00 E-value=8.1e-41 Score=348.82 Aligned_cols=251 Identities=22% Similarity=0.285 Sum_probs=205.3
Q ss_pred hccCCccccccccccEEEEEEEec-CCCeEEEEEechhhH------HHHHHHHHHHHHHHhcCCCceeeEeeeeecCCee
Q 005040 426 TDEFNECNLLGTGGFGSVYKGTLS-DGTNVAIKIFNLQLE------RAFRSFDSECEILRNVRHRNLLKILGSCSNLDFK 498 (717)
Q Consensus 426 ~~~~~~~~~lg~G~~g~V~~~~~~-~~~~vavK~~~~~~~------~~~~~~~~e~~~l~~l~hpniv~~~~~~~~~~~~ 498 (717)
.++|++.+.||+|+||.||+|... +++.||+|++..... ...+.+.+|++++++++||||+++++++.+....
T Consensus 10 ~~~y~~~~~lG~G~~g~V~~~~~~~~~~~~avK~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~hp~iv~~~~~~~~~~~~ 89 (326)
T 2y0a_A 10 DDYYDTGEELGSGQFAVVKKCREKSTGLQYAAKFIKKRRTKSSRRGVSREDIEREVSILKEIQHPNVITLHEVYENKTDV 89 (326)
T ss_dssp HHHEEEEEEEECCSSEEEEEEEETTTCCEEEEEEEEBCCSTTCSSSBCHHHHHHHHHHHHHCCCTTBCCEEEEEECSSEE
T ss_pred ccceEeceEEeeCCCeEEEEEEECCCCcEEEEEEEEccccccccchhhHHHHHHHHHHHHhCCCCCCCcEEEEEEeCCEE
Confidence 467999999999999999999976 789999999865431 1346788999999999999999999999999999
Q ss_pred EEEEEccCCCCHHHHHhhCCCCCCHHHHHHHHHHHHHHHHHHhhcCCCCCeEecCCCCCCeeeCCCC----cEEEeeecc
Q 005040 499 ALVLEFMPNGSLEKWLYSHNYFLDILQRLNIMIDVGSALEYLHHCHSSAPIIHCDLKPTNILLDENM----VAHVSDFGI 574 (717)
Q Consensus 499 ~lv~e~~~~g~L~~~l~~~~~~~~~~~~~~i~~~i~~~l~~LH~~~~~~~ivH~dlk~~Nill~~~~----~~kl~Dfgl 574 (717)
++||||+++|+|.+++.... .+++..+..++.|++.||.||| +.+|+||||||+||+++.++ .+||+|||+
T Consensus 90 ~lv~e~~~~~~L~~~l~~~~-~~~~~~~~~i~~qi~~al~~lH----~~~ivH~Dlkp~NIll~~~~~~~~~~kl~Dfg~ 164 (326)
T 2y0a_A 90 ILILELVAGGELFDFLAEKE-SLTEEEATEFLKQILNGVYYLH----SLQIAHFDLKPENIMLLDRNVPKPRIKIIDFGL 164 (326)
T ss_dssp EEEEECCCSCBHHHHHTTSS-CCBHHHHHHHHHHHHHHHHHHH----HTTEECCCCCGGGEEESCSSSSSCCEEECCCTT
T ss_pred EEEEEcCCCCCHHHHHHhcC-CcCHHHHHHHHHHHHHHHHHHH----HCCeEcCCCCHHHEEEecCCCCCCCEEEEECCC
Confidence 99999999999999997653 4899999999999999999999 67899999999999999887 899999999
Q ss_pred ccccCCCCCceeeeccccCccccCCCccCCCCcCcccchhhHHHHHHHHHhCCCCCCccccCcchHHHHHHhhCCCchhh
Q 005040 575 SKLLGEGEDSVIQTMTMATIGYMAPEYGSEGIVSTKCDVYSYGVLLMETFTEKKPTDEMFTGEMSLRRWVKESLPHRLTE 654 (717)
Q Consensus 575 ~~~~~~~~~~~~~~~~~~t~~y~aPE~~~~~~~~~~~Dvws~G~il~el~tg~~p~~~~~~~~~~~~~~~~~~~~~~~~~ 654 (717)
+........ .....||+.|+|||++.+..++.++||||+||++|||++|+.||...... .....+.....
T Consensus 165 a~~~~~~~~---~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~~ll~g~~pf~~~~~~--~~~~~~~~~~~----- 234 (326)
T 2y0a_A 165 AHKIDFGNE---FKNIFGTPEFVAPEIVNYEPLGLEADMWSIGVITYILLSGASPFLGDTKQ--ETLANVSAVNY----- 234 (326)
T ss_dssp CEECCTTSC---CCCCCSCTTTCCHHHHTTCCCCTHHHHHHHHHHHHHHHHSCCSSCCSSHH--HHHHHHHHTCC-----
T ss_pred CeECCCCCc---cccccCCcCcCCceeecCCCCCcHHHHHHHHHHHHHHHHCcCCCCCCCHH--HHHHHHHhcCC-----
Confidence 987653322 23456899999999999999999999999999999999999999653211 11111111000
Q ss_pred hccccchhhhhhhhhhHHHHHHHHHHHhhccCCCCCCCCCHHHHHH
Q 005040 655 VVDANLVREEQAFSDKMDCLFSIMDLALDCCMDTPHKRIHMTDAAA 700 (717)
Q Consensus 655 ~~~~~~~~~~~~~~~~~~~~~~l~~li~~cl~~~P~~Rpt~~ev~~ 700 (717)
.... .....++..+.+++.+||+.||++|||+.|+++
T Consensus 235 ----~~~~-----~~~~~~~~~~~~li~~~L~~dP~~Rpt~~e~l~ 271 (326)
T 2y0a_A 235 ----EFED-----EYFSNTSALAKDFIRRLLVKDPKKRMTIQDSLQ 271 (326)
T ss_dssp ----CCCH-----HHHTTSCHHHHHHHHHHSCSSGGGSCCHHHHHH
T ss_pred ----CcCc-----cccccCCHHHHHHHHHHccCChhhCCCHHHHhc
Confidence 0000 011234566889999999999999999999986
No 79
>2izr_A Casein kinase I isoform gamma-3; serine/threonine-protein kinase, transferase, ATP- binding, phosphorylation, nucleotide-binding; HET: BRK; 1.3A {Homo sapiens} PDB: 2izs_A* 2izt_A* 2izu_A* 2chl_A* 2c47_A* 2cmw_A*
Probab=100.00 E-value=3.1e-41 Score=353.07 Aligned_cols=264 Identities=18% Similarity=0.173 Sum_probs=211.9
Q ss_pred hccCCccccccccccEEEEEEEe-cCCCeEEEEEechhhHHHHHHHHHHHHHHHhc-CCCceeeEeeeeecCCeeEEEEE
Q 005040 426 TDEFNECNLLGTGGFGSVYKGTL-SDGTNVAIKIFNLQLERAFRSFDSECEILRNV-RHRNLLKILGSCSNLDFKALVLE 503 (717)
Q Consensus 426 ~~~~~~~~~lg~G~~g~V~~~~~-~~~~~vavK~~~~~~~~~~~~~~~e~~~l~~l-~hpniv~~~~~~~~~~~~~lv~e 503 (717)
.++|++.+.||+|+||.||+|.. .+++.||||++..... .+.+.+|+++++++ +||||+++++++.+.+..++|||
T Consensus 8 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~--~~~~~~E~~~l~~l~~h~~i~~~~~~~~~~~~~~lv~e 85 (330)
T 2izr_A 8 GPNFRVGKKIGCGNFGELRLGKNLYTNEYVAIKLEPMKSR--APQLHLEYRFYKQLGSGDGIPQVYYFGPCGKYNAMVLE 85 (330)
T ss_dssp TTTEEEEEECCC-CTTSEEEEEETTTTEEEEEEEEETTCS--SCCHHHHHHHHHHHCSCTTSCCEEEEEEETTEEEEEEE
T ss_pred cCCeEEEEEeeccCCceEEEEEECCCCcEEEEEEeccccc--hHHHHHHHHHHHHhhCCCCCCEEEEEEecCCccEEEEE
Confidence 36799999999999999999996 4789999999875432 24578899999999 99999999999999999999999
Q ss_pred ccCCCCHHHHHhhCCCCCCHHHHHHHHHHHHHHHHHHhhcCCCCCeEecCCCCCCeeeCCCCc-----EEEeeecccccc
Q 005040 504 FMPNGSLEKWLYSHNYFLDILQRLNIMIDVGSALEYLHHCHSSAPIIHCDLKPTNILLDENMV-----AHVSDFGISKLL 578 (717)
Q Consensus 504 ~~~~g~L~~~l~~~~~~~~~~~~~~i~~~i~~~l~~LH~~~~~~~ivH~dlk~~Nill~~~~~-----~kl~Dfgl~~~~ 578 (717)
|+ +++|.+++......+++..+..++.|++.||+||| +.+|+||||||+||+++.++. +||+|||+++.+
T Consensus 86 ~~-~~~L~~~~~~~~~~~~~~~~~~i~~qi~~~l~~LH----~~~iiHrDlkp~Nill~~~~~~~~~~~kl~DFg~a~~~ 160 (330)
T 2izr_A 86 LL-GPSLEDLFDLCDRTFSLKTVLMIAIQLISRMEYVH----SKNLIYRDVKPENFLIGRPGNKTQQVIHIIDFALAKEY 160 (330)
T ss_dssp CC-CCBHHHHHHHTTTCCCHHHHHHHHHHHHHHHHHHH----HTTEECCCCCGGGEEECCGGGTCTTSEEECCCTTCEES
T ss_pred eC-CCCHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHH----hCCeeccCCCHHHeeeccCCCCCCceEEEEEcccceee
Confidence 99 89999999976667999999999999999999999 678999999999999998887 999999999876
Q ss_pred CCCCCce-----eeeccccCccccCCCccCCCCcCcccchhhHHHHHHHHHhCCCCCCccccCcchHHHHHHhhCCCchh
Q 005040 579 GEGEDSV-----IQTMTMATIGYMAPEYGSEGIVSTKCDVYSYGVLLMETFTEKKPTDEMFTGEMSLRRWVKESLPHRLT 653 (717)
Q Consensus 579 ~~~~~~~-----~~~~~~~t~~y~aPE~~~~~~~~~~~Dvws~G~il~el~tg~~p~~~~~~~~~~~~~~~~~~~~~~~~ 653 (717)
....... ......||+.|+|||++.+..++.++||||||+++|||++|+.||....... .......
T Consensus 161 ~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Di~slG~il~ell~g~~Pf~~~~~~~--~~~~~~~------- 231 (330)
T 2izr_A 161 IDPETKKHIPYREHKSLTGTARYMSINTHLGKEQSRRDDLEALGHMFMYFLRGSLPWQGLKADT--LKERYQK------- 231 (330)
T ss_dssp BCTTTCCBCCCCCCCCCCSCTTTCCHHHHTTCCCCHHHHHHHHHHHHHHHHHSSCTTTTCCCSS--HHHHHHH-------
T ss_pred ecCCCCccccccccCCcCCCccccChHHHcCCCCCchhHHHHHHHHHHHHhcCCCCcccccccc--HHHHHHH-------
Confidence 5433211 1234579999999999999999999999999999999999999997643221 1111100
Q ss_pred hhccccchhhhhhhhhhHHHHHHHHHHHhhccCCCCCCCCCHHHHHHHHHHhHHhh
Q 005040 654 EVVDANLVREEQAFSDKMDCLFSIMDLALDCCMDTPHKRIHMTDAAAKLRKIKAKF 709 (717)
Q Consensus 654 ~~~~~~~~~~~~~~~~~~~~~~~l~~li~~cl~~~P~~Rpt~~ev~~~L~~~~~~~ 709 (717)
+......... ......++ ++.+++..||+.||.+||++.++.+.|+++.+..
T Consensus 232 -i~~~~~~~~~--~~~~~~~p-~~~~li~~~l~~~p~~RP~~~~l~~~l~~~~~~~ 283 (330)
T 2izr_A 232 -IGDTKRATPI--EVLCENFP-EMATYLRYVRRLDFFEKPDYDYLRKLFTDLFDRK 283 (330)
T ss_dssp -HHHHHHHSCH--HHHTTTCH-HHHHHHHHHHHCCTTCCCCHHHHHHHHHHHHHHT
T ss_pred -HHhhhccCCH--HHHhccCh-HHHHHHHHHHhCCCCCCCCHHHHHHHHHHHHHHc
Confidence 0000000000 00011234 7899999999999999999999999999987654
No 80
>1mp8_A Focal adhesion kinase 1; tyrosine protein kinase, transferase; HET: ADP; 1.60A {Homo sapiens} SCOP: d.144.1.7 PDB: 2ijm_A* 2etm_A* 3pxk_A* 2jkq_A* 2j0m_B* 2jkm_A* 2j0l_A* 3bz3_A* 2jko_A* 2jkk_A*
Probab=100.00 E-value=4.6e-41 Score=343.44 Aligned_cols=258 Identities=22% Similarity=0.358 Sum_probs=200.6
Q ss_pred hccCCccccccccccEEEEEEEec----CCCeEEEEEechhh-HHHHHHHHHHHHHHHhcCCCceeeEeeeeecCCeeEE
Q 005040 426 TDEFNECNLLGTGGFGSVYKGTLS----DGTNVAIKIFNLQL-ERAFRSFDSECEILRNVRHRNLLKILGSCSNLDFKAL 500 (717)
Q Consensus 426 ~~~~~~~~~lg~G~~g~V~~~~~~----~~~~vavK~~~~~~-~~~~~~~~~e~~~l~~l~hpniv~~~~~~~~~~~~~l 500 (717)
.++|++.+.||+|+||.||+|.+. .+..||+|++.... ....+.+.+|+.++++++||||+++++++. .+..++
T Consensus 14 ~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~-~~~~~l 92 (281)
T 1mp8_A 14 RERIELGRCIGEGQFGDVHQGIYMSPENPALAVAIKTCKNCTSDSVREKFLQEALTMRQFDHPHIVKLIGVIT-ENPVWI 92 (281)
T ss_dssp GGGEEEEEEEEECSSSEEEEEEECCC--CCEEEEEEECTTTTSHHHHHHHHHHHHHHHTCCCTTBCCEEEEEC-SSSCEE
T ss_pred hHHeEEEeEeeecCCeeEEEEEEecCCCCceEEEEEeccccCCHHHHHHHHHHHHHHHhCCCCccceEEEEEc-cCccEE
Confidence 468999999999999999999874 24569999987543 344567889999999999999999999985 456799
Q ss_pred EEEccCCCCHHHHHhhCCCCCCHHHHHHHHHHHHHHHHHHhhcCCCCCeEecCCCCCCeeeCCCCcEEEeeeccccccCC
Q 005040 501 VLEFMPNGSLEKWLYSHNYFLDILQRLNIMIDVGSALEYLHHCHSSAPIIHCDLKPTNILLDENMVAHVSDFGISKLLGE 580 (717)
Q Consensus 501 v~e~~~~g~L~~~l~~~~~~~~~~~~~~i~~~i~~~l~~LH~~~~~~~ivH~dlk~~Nill~~~~~~kl~Dfgl~~~~~~ 580 (717)
||||+++|+|.+++......+++..+..++.|++.||.||| +.+|+||||||+||+++.++.+||+|||++.....
T Consensus 93 v~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~qi~~~l~~lH----~~~i~H~dlkp~Nil~~~~~~~kl~Dfg~~~~~~~ 168 (281)
T 1mp8_A 93 IMELCTLGELRSFLQVRKYSLDLASLILYAYQLSTALAYLE----SKRFVHRDIAARNVLVSSNDCVKLGDFGLSRYMED 168 (281)
T ss_dssp EEECCTTEEHHHHHHHTTTTSCHHHHHHHHHHHHHHHHHHH----HTTCCCSCCSGGGEEEEETTEEEECC---------
T ss_pred EEecCCCCCHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHH----hCCeecccccHHHEEECCCCCEEECccccccccCc
Confidence 99999999999999977767999999999999999999999 67899999999999999999999999999987654
Q ss_pred CCCceeeeccccCccccCCCccCCCCcCcccchhhHHHHHHHHHh-CCCCCCccccCcchHHHHHHhhCCCchhhhcccc
Q 005040 581 GEDSVIQTMTMATIGYMAPEYGSEGIVSTKCDVYSYGVLLMETFT-EKKPTDEMFTGEMSLRRWVKESLPHRLTEVVDAN 659 (717)
Q Consensus 581 ~~~~~~~~~~~~t~~y~aPE~~~~~~~~~~~Dvws~G~il~el~t-g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 659 (717)
.... ......+|+.|+|||.+.+..++.++||||||+++|||++ |..||...... .....+......
T Consensus 169 ~~~~-~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~~l~ell~~g~~pf~~~~~~--~~~~~i~~~~~~--------- 236 (281)
T 1mp8_A 169 STYY-KASKGKLPIKWMAPESINFRRFTSASDVWMFGVCMWEILMHGVKPFQGVKNN--DVIGRIENGERL--------- 236 (281)
T ss_dssp -----------CCGGGCCHHHHHHCCCSHHHHHHHHHHHHHHHHTTSCCTTTTCCGG--GHHHHHHTTCCC---------
T ss_pred cccc-ccccCCCcccccChhhcccCCCCCccCchHHHHHHHHHHhcCCCCCCcCCHH--HHHHHHHcCCCC---------
Confidence 3221 2233456789999999988899999999999999999997 99999764322 122222111000
Q ss_pred chhhhhhhhhhHHHHHHHHHHHhhccCCCCCCCCCHHHHHHHHHHhHHh
Q 005040 660 LVREEQAFSDKMDCLFSIMDLALDCCMDTPHKRIHMTDAAAKLRKIKAK 708 (717)
Q Consensus 660 ~~~~~~~~~~~~~~~~~l~~li~~cl~~~P~~Rpt~~ev~~~L~~~~~~ 708 (717)
+....++..+.+++.+||+.||++|||+.|+++.|+++.++
T Consensus 237 --------~~~~~~~~~l~~li~~~l~~~p~~Rps~~~l~~~l~~~~~~ 277 (281)
T 1mp8_A 237 --------PMPPNCPPTLYSLMTKCWAYDPSRRPRFTELKAQLSTILEE 277 (281)
T ss_dssp --------CCCTTCCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHHHH
T ss_pred --------CCCCCCCHHHHHHHHHHccCChhhCcCHHHHHHHHHHHHHH
Confidence 01123456788999999999999999999999999998665
No 81
>1fot_A TPK1 delta, CAMP-dependent protein kinase type 1; open conformation, transferase; HET: TPO; 2.80A {Saccharomyces cerevisiae} SCOP: d.144.1.7
Probab=100.00 E-value=8.2e-41 Score=346.56 Aligned_cols=245 Identities=26% Similarity=0.324 Sum_probs=204.1
Q ss_pred hccCCccccccccccEEEEEEEec-CCCeEEEEEechhhH---HHHHHHHHHHHHHHhcCCCceeeEeeeeecCCeeEEE
Q 005040 426 TDEFNECNLLGTGGFGSVYKGTLS-DGTNVAIKIFNLQLE---RAFRSFDSECEILRNVRHRNLLKILGSCSNLDFKALV 501 (717)
Q Consensus 426 ~~~~~~~~~lg~G~~g~V~~~~~~-~~~~vavK~~~~~~~---~~~~~~~~e~~~l~~l~hpniv~~~~~~~~~~~~~lv 501 (717)
.++|++.+.||+|+||.||+|+.+ +|+.||+|++..... ...+.+.+|..+++.++||||+++++++.+....|+|
T Consensus 5 ~~~y~~~~~lG~G~~g~V~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~E~~~l~~l~hp~Iv~~~~~~~~~~~~~lv 84 (318)
T 1fot_A 5 LQDFQILRTLGTGSFGRVHLIRSRHNGRYYAMKVLKKEIVVRLKQVEHTNDERLMLSIVTHPFIIRMWGTFQDAQQIFMI 84 (318)
T ss_dssp GGGEEEEEEEEECSSCEEEEEEETTTCCEEEEEEEEHHHHHHTTCHHHHHHHHHHHHSCCBTTBCCEEEEEECSSEEEEE
T ss_pred hHHcEEEEEEeeCCCEEEEEEEECCCCCEEEEEEEEHHHhhhhhHHHHHHHHHHHHhhCCCCCCceEeEEEEeCCEEEEE
Confidence 468999999999999999999976 799999999976532 2346678899999999999999999999999999999
Q ss_pred EEccCCCCHHHHHhhCCCCCCHHHHHHHHHHHHHHHHHHhhcCCCCCeEecCCCCCCeeeCCCCcEEEeeeccccccCCC
Q 005040 502 LEFMPNGSLEKWLYSHNYFLDILQRLNIMIDVGSALEYLHHCHSSAPIIHCDLKPTNILLDENMVAHVSDFGISKLLGEG 581 (717)
Q Consensus 502 ~e~~~~g~L~~~l~~~~~~~~~~~~~~i~~~i~~~l~~LH~~~~~~~ivH~dlk~~Nill~~~~~~kl~Dfgl~~~~~~~ 581 (717)
|||+++|+|.+++.... .+++..+..++.|++.||.||| +.+|+||||||+||+++.++.+||+|||+++.....
T Consensus 85 ~e~~~gg~L~~~l~~~~-~~~~~~~~~~~~qi~~aL~~LH----~~~ivHrDlkp~NIll~~~g~~kL~Dfg~a~~~~~~ 159 (318)
T 1fot_A 85 MDYIEGGELFSLLRKSQ-RFPNPVAKFYAAEVCLALEYLH----SKDIIYRDLKPENILLDKNGHIKITDFGFAKYVPDV 159 (318)
T ss_dssp ECCCCSCBHHHHHHHTS-SCCHHHHHHHHHHHHHHHHHHH----TTTEECCCCCGGGEEECTTSCEEECCCSSCEECSSC
T ss_pred EeCCCCCCHHHHHHHcC-CCCHHHHHHHHHHHHHHHHHHH----HCCccccCCChheEEEcCCCCEEEeecCcceecCCc
Confidence 99999999999998754 4899999999999999999999 789999999999999999999999999999876432
Q ss_pred CCceeeeccccCccccCCCccCCCCcCcccchhhHHHHHHHHHhCCCCCCccccCcchHHHHHHhhCCCchhhhccccch
Q 005040 582 EDSVIQTMTMATIGYMAPEYGSEGIVSTKCDVYSYGVLLMETFTEKKPTDEMFTGEMSLRRWVKESLPHRLTEVVDANLV 661 (717)
Q Consensus 582 ~~~~~~~~~~~t~~y~aPE~~~~~~~~~~~Dvws~G~il~el~tg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 661 (717)
....+||+.|+|||++.+..++.++||||+||++|||++|+.||...... .....+.. ....
T Consensus 160 -----~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~ell~g~~pf~~~~~~--~~~~~i~~-----------~~~~ 221 (318)
T 1fot_A 160 -----TYTLCGTPDYIAPEVVSTKPYNKSIDWWSFGILIYEMLAGYTPFYDSNTM--KTYEKILN-----------AELR 221 (318)
T ss_dssp -----BCCCCSCTTTCCHHHHTTCCBCTTHHHHHHHHHHHHHHHSSCTTCCSSHH--HHHHHHHH-----------CCCC
T ss_pred -----cccccCCccccCHhHhcCCCCCcccchhhhHHHHHHHHhCCCCCCCCCHH--HHHHHHHh-----------CCCC
Confidence 23457899999999999999999999999999999999999999653211 11111110 0000
Q ss_pred hhhhhhhhhHHHHHHHHHHHhhccCCCCCCCC-----CHHHHHH
Q 005040 662 REEQAFSDKMDCLFSIMDLALDCCMDTPHKRI-----HMTDAAA 700 (717)
Q Consensus 662 ~~~~~~~~~~~~~~~l~~li~~cl~~~P~~Rp-----t~~ev~~ 700 (717)
+ +..++.++.+++.+|+..||++|| +++|+++
T Consensus 222 -----~--p~~~~~~~~~li~~lL~~dp~~R~~~~~~~~~~i~~ 258 (318)
T 1fot_A 222 -----F--PPFFNEDVKDLLSRLITRDLSQRLGNLQNGTEDVKN 258 (318)
T ss_dssp -----C--CTTSCHHHHHHHHHHTCSCTTTCTTSSTTTTHHHHT
T ss_pred -----C--CCCCCHHHHHHHHHHhccCHHHcCCCcCCCHHHHhc
Confidence 0 012345688999999999999999 7888774
No 82
>4fvq_A Tyrosine-protein kinase JAK2; janus protein kinase, pseudokinase, ATP binding, phosphoryla transferase; HET: ATP; 1.75A {Homo sapiens} PDB: 4fvp_A* 4fvr_A*
Probab=100.00 E-value=9.5e-42 Score=350.14 Aligned_cols=255 Identities=22% Similarity=0.336 Sum_probs=205.6
Q ss_pred hccCCccccccccccEEEEEEEec-CC-------CeEEEEEechhhHHHHHHHHHHHHHHHhcCCCceeeEeeeeecCCe
Q 005040 426 TDEFNECNLLGTGGFGSVYKGTLS-DG-------TNVAIKIFNLQLERAFRSFDSECEILRNVRHRNLLKILGSCSNLDF 497 (717)
Q Consensus 426 ~~~~~~~~~lg~G~~g~V~~~~~~-~~-------~~vavK~~~~~~~~~~~~~~~e~~~l~~l~hpniv~~~~~~~~~~~ 497 (717)
.++|++.+.||+|+||.||+|... ++ ..||+|++........+.+.+|++++++++||||+++++++.+.+.
T Consensus 7 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~~~~~~~~va~K~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~ 86 (289)
T 4fvq_A 7 NEDLIFNESLGQGTFTKIFKGVRREVGDYGQLHETEVLLKVLDKAHRNYSESFFEAASMMSKLSHKHLVLNYGVCVCGDE 86 (289)
T ss_dssp GGGEEEEEEEEEETTEEEEEEEEEEECGGGCEEEEEEEEEEECGGGGGGHHHHHHHHHHHHTSCCTTBCCEEEEECCTTC
T ss_pred hhHeeeeeeeccCCCceEEEEEEecccccccccchhhhhhhcccccHHHHHHHHHHHHHHHhCCCCCEeEEEEEEEeCCC
Confidence 468999999999999999999865 33 4699999987766667889999999999999999999999999999
Q ss_pred eEEEEEccCCCCHHHHHhhCCCCCCHHHHHHHHHHHHHHHHHHhhcCCCCCeEecCCCCCCeeeCCCCc--------EEE
Q 005040 498 KALVLEFMPNGSLEKWLYSHNYFLDILQRLNIMIDVGSALEYLHHCHSSAPIIHCDLKPTNILLDENMV--------AHV 569 (717)
Q Consensus 498 ~~lv~e~~~~g~L~~~l~~~~~~~~~~~~~~i~~~i~~~l~~LH~~~~~~~ivH~dlk~~Nill~~~~~--------~kl 569 (717)
.++||||+++|+|.+++......+++..+..++.|++.||.||| +.+|+||||||+||+++.++. +||
T Consensus 87 ~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~i~~qi~~~L~~LH----~~~ivH~Dlkp~NIll~~~~~~~~~~~~~~kl 162 (289)
T 4fvq_A 87 NILVQEFVKFGSLDTYLKKNKNCINILWKLEVAKQLAAAMHFLE----ENTLIHGNVCAKNILLIREEDRKTGNPPFIKL 162 (289)
T ss_dssp CEEEEECCTTCBHHHHHHHTGGGCCHHHHHHHHHHHHHHHHHHH----HTTCCCCCCCGGGEEEEECCBGGGTBCCEEEE
T ss_pred CEEEEECCCCCCHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHh----hCCeECCCcCcceEEEecCCcccccccceeee
Confidence 99999999999999999987766999999999999999999999 678999999999999998887 999
Q ss_pred eeeccccccCCCCCceeeeccccCccccCCCccCC-CCcCcccchhhHHHHHHHHHhCCCCCCccccCcchHHHHHHhhC
Q 005040 570 SDFGISKLLGEGEDSVIQTMTMATIGYMAPEYGSE-GIVSTKCDVYSYGVLLMETFTEKKPTDEMFTGEMSLRRWVKESL 648 (717)
Q Consensus 570 ~Dfgl~~~~~~~~~~~~~~~~~~t~~y~aPE~~~~-~~~~~~~Dvws~G~il~el~tg~~p~~~~~~~~~~~~~~~~~~~ 648 (717)
+|||++...... ....+|+.|+|||++.+ ..++.++||||||+++|||++|..|+........ ........
T Consensus 163 ~Dfg~~~~~~~~------~~~~~~~~y~aPE~~~~~~~~~~~~DiwslG~il~el~~g~~~~~~~~~~~~-~~~~~~~~- 234 (289)
T 4fvq_A 163 SDPGISITVLPK------DILQERIPWVPPECIENPKNLNLATDKWSFGTTLWEICSGGDKPLSALDSQR-KLQFYEDR- 234 (289)
T ss_dssp CCCCSCTTTSCH------HHHHHTTTTSCHHHHHCGGGCCHHHHHHHHHHHHHHHHTTTCCTTTTSCHHH-HHHHHHTT-
T ss_pred ccCcccccccCc------cccCCcCcccCHHHhCCCCCCCchhHHHHHHHHHHHHHcCCCCCccccchHH-HHHHhhcc-
Confidence 999998765321 23357889999998877 7799999999999999999996555432211111 11111110
Q ss_pred CCchhhhccccchhhhhhhhhhHHHHHHHHHHHhhccCCCCCCCCCHHHHHHHHHHhHHhhc
Q 005040 649 PHRLTEVVDANLVREEQAFSDKMDCLFSIMDLALDCCMDTPHKRIHMTDAAAKLRKIKAKFL 710 (717)
Q Consensus 649 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~cl~~~P~~Rpt~~ev~~~L~~~~~~~~ 710 (717)
.... ...+.++.+++.+||+.||++|||+.|+++.|+++...-.
T Consensus 235 -~~~~-----------------~~~~~~l~~li~~~l~~dp~~Rps~~~ll~~l~~l~~p~~ 278 (289)
T 4fvq_A 235 -HQLP-----------------APKAAELANLINNCMDYEPDHRPSFRAIIRDLNSLFTPDL 278 (289)
T ss_dssp -CCCC-----------------CCSSCTTHHHHHHHSCSSGGGSCCHHHHHHHHHTCC----
T ss_pred -CCCC-----------------CCCCHHHHHHHHHHcCCChhHCcCHHHHHHHHHHhcCCCC
Confidence 0000 0112346799999999999999999999999998865433
No 83
>3kex_A Receptor tyrosine-protein kinase ERBB-3; kinase domain, inactive kinase, HER3, ATP-binding, cell membrane, membrane, nucleotide-binding; HET: ANP; 2.80A {Homo sapiens} PDB: 3lmg_A*
Probab=100.00 E-value=1.9e-41 Score=353.74 Aligned_cols=257 Identities=23% Similarity=0.409 Sum_probs=205.9
Q ss_pred ccCCccccccccccEEEEEEEec-CCCe----EEEEEechhh-HHHHHHHHHHHHHHHhcCCCceeeEeeeeecCCeeEE
Q 005040 427 DEFNECNLLGTGGFGSVYKGTLS-DGTN----VAIKIFNLQL-ERAFRSFDSECEILRNVRHRNLLKILGSCSNLDFKAL 500 (717)
Q Consensus 427 ~~~~~~~~lg~G~~g~V~~~~~~-~~~~----vavK~~~~~~-~~~~~~~~~e~~~l~~l~hpniv~~~~~~~~~~~~~l 500 (717)
++|++.+.||+|+||.||+|.+. +++. ||+|.+.... ....+.+.+|+.++++++||||+++++++.+ +..++
T Consensus 13 ~~y~~~~~lG~G~~g~Vy~~~~~~~~~~~~~kv~~K~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~-~~~~~ 91 (325)
T 3kex_A 13 TELRKLKVLGSGVFGTVHKGVWIPEGESIKIPVCIKVIEDKSGRQSFQAVTDHMLAIGSLDHAHIVRLLGLCPG-SSLQL 91 (325)
T ss_dssp TTEEEEEEEECCSSCEEEEEEECCTTCSCCEEEEEEEECCTTSCSCBCSCCHHHHHHHTCCCTTBCCEEEEECB-SSEEE
T ss_pred hHceeeeeeeecCCceEEEEEEcCCCceEEEEEEEEeccccccHHHHHHHHHHHHHHhcCCCCCcCeEEEEEcC-CccEE
Confidence 57899999999999999999965 4554 7888775432 2233456789999999999999999999864 56799
Q ss_pred EEEccCCCCHHHHHhhCCCCCCHHHHHHHHHHHHHHHHHHhhcCCCCCeEecCCCCCCeeeCCCCcEEEeeeccccccCC
Q 005040 501 VLEFMPNGSLEKWLYSHNYFLDILQRLNIMIDVGSALEYLHHCHSSAPIIHCDLKPTNILLDENMVAHVSDFGISKLLGE 580 (717)
Q Consensus 501 v~e~~~~g~L~~~l~~~~~~~~~~~~~~i~~~i~~~l~~LH~~~~~~~ivH~dlk~~Nill~~~~~~kl~Dfgl~~~~~~ 580 (717)
||||+.+|+|.+++......+++..+..++.|++.||+||| +.+|+||||||+||+++.++.+||+|||+++....
T Consensus 92 v~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~qi~~~l~~lH----~~~ivH~Dikp~Nil~~~~~~~kl~Dfg~a~~~~~ 167 (325)
T 3kex_A 92 VTQYLPLGSLLDHVRQHRGALGPQLLLNWGVQIAKGMYYLE----EHGMVHRNLAARNVLLKSPSQVQVADFGVADLLPP 167 (325)
T ss_dssp EEECCTTCBSHHHHHSSGGGSCTTHHHHHHHHHHHHHHHHH----HTTCCCSCCSSTTEEESSSSCEEECSCSGGGGSCC
T ss_pred EEEeCCCCCHHHHHHHccccCCHHHHHHHHHHHHHHHHHHH----hCCCCCCccchheEEECCCCeEEECCCCcccccCc
Confidence 99999999999999877667899999999999999999999 67899999999999999999999999999998765
Q ss_pred CCCceeeeccccCccccCCCccCCCCcCcccchhhHHHHHHHHHh-CCCCCCccccCcchHHHHHHhhCCCchhhhcccc
Q 005040 581 GEDSVIQTMTMATIGYMAPEYGSEGIVSTKCDVYSYGVLLMETFT-EKKPTDEMFTGEMSLRRWVKESLPHRLTEVVDAN 659 (717)
Q Consensus 581 ~~~~~~~~~~~~t~~y~aPE~~~~~~~~~~~Dvws~G~il~el~t-g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 659 (717)
...........+|..|+|||++.+..++.++||||||+++|||++ |+.||...... .....+.......
T Consensus 168 ~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~~l~el~~~g~~p~~~~~~~--~~~~~~~~~~~~~-------- 237 (325)
T 3kex_A 168 DDKQLLYSEAKTPIKWMALESIHFGKYTHQSDVWSYGVTVWELMTFGAEPYAGLRLA--EVPDLLEKGERLA-------- 237 (325)
T ss_dssp CTTCCC-----CCTTTSCHHHHHHCCCCHHHHHHHHHHHHHHHHTTSCCTTTTSCTT--HHHHHHHTTCBCC--------
T ss_pred ccccccccCCCCcccccChHHhccCCCChhhHhHHhHHHHHHHHhCCCCCccccCHH--HHHHHHHcCCCCC--------
Confidence 544444455668889999999998899999999999999999999 99999764222 2222222111000
Q ss_pred chhhhhhhhhhHHHHHHHHHHHhhccCCCCCCCCCHHHHHHHHHHhHH
Q 005040 660 LVREEQAFSDKMDCLFSIMDLALDCCMDTPHKRIHMTDAAAKLRKIKA 707 (717)
Q Consensus 660 ~~~~~~~~~~~~~~~~~l~~li~~cl~~~P~~Rpt~~ev~~~L~~~~~ 707 (717)
.+..++.++.+++.+||+.||++|||+.|+++.|+++.+
T Consensus 238 ---------~~~~~~~~~~~li~~~l~~dp~~Rps~~el~~~l~~~~~ 276 (325)
T 3kex_A 238 ---------QPQICTIDVYMVMVKCWMIDENIRPTFKELANEFTRMAR 276 (325)
T ss_dssp ---------CCTTBCTTTTHHHHHHTCSCTTTSCCHHHHHHHHHHHTT
T ss_pred ---------CCCcCcHHHHHHHHHHcCCChhhCcCHHHHHHHHHHHHh
Confidence 011233457799999999999999999999999998854
No 84
>3t9t_A Tyrosine-protein kinase ITK/TSK; kinase domain, alpha/beta, ATP binding, phosphorylation, intracellular, transferase-transferase inhibitor complex; HET: IAQ; 1.65A {Homo sapiens} PDB: 3v5l_A* 3v5j_A* 3v8t_A* 3v8w_A* 1sm2_A* 1snu_A* 1snx_A 3qgw_A* 3qgy_A* 3miy_A* 3mj1_A* 3mj2_A*
Probab=100.00 E-value=5.1e-41 Score=340.50 Aligned_cols=258 Identities=26% Similarity=0.385 Sum_probs=213.1
Q ss_pred hccCCccccccccccEEEEEEEecCCCeEEEEEechhhHHHHHHHHHHHHHHHhcCCCceeeEeeeeecCCeeEEEEEcc
Q 005040 426 TDEFNECNLLGTGGFGSVYKGTLSDGTNVAIKIFNLQLERAFRSFDSECEILRNVRHRNLLKILGSCSNLDFKALVLEFM 505 (717)
Q Consensus 426 ~~~~~~~~~lg~G~~g~V~~~~~~~~~~vavK~~~~~~~~~~~~~~~e~~~l~~l~hpniv~~~~~~~~~~~~~lv~e~~ 505 (717)
.++|+..+.||+|+||.||+|.+.+++.||+|++..... ..+.+.+|++++++++||||+++++++.+.+..++||||+
T Consensus 7 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~vaiK~~~~~~~-~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~lv~e~~ 85 (267)
T 3t9t_A 7 PSELTFVQEIGSGQFGLVHLGYWLNKDKVAIKTIREGAM-SEEDFIEEAEVMMKLSHPKLVQLYGVCLEQAPICLVTEFM 85 (267)
T ss_dssp GGGEEEEEEEEEETTEEEEEEEETTTEEEEEEEECTTTB-CHHHHHHHHHHHHTCCCTTBCCEEEEECSSSSCEEEECCC
T ss_pred hhheeeeeEecCCCceeEEEEEecCCCeEEEEEccccCC-CHHHHHHHHHHHHhCCCCCEeeEEEEEccCCCeEEEEeCC
Confidence 368899999999999999999998888999999976542 2357889999999999999999999999999999999999
Q ss_pred CCCCHHHHHhhCCCCCCHHHHHHHHHHHHHHHHHHhhcCCCCCeEecCCCCCCeeeCCCCcEEEeeeccccccCCCCCce
Q 005040 506 PNGSLEKWLYSHNYFLDILQRLNIMIDVGSALEYLHHCHSSAPIIHCDLKPTNILLDENMVAHVSDFGISKLLGEGEDSV 585 (717)
Q Consensus 506 ~~g~L~~~l~~~~~~~~~~~~~~i~~~i~~~l~~LH~~~~~~~ivH~dlk~~Nill~~~~~~kl~Dfgl~~~~~~~~~~~ 585 (717)
++++|.+++......+++..+..++.|++.||.||| +.+++||||||+||+++.++.+||+|||++....... ..
T Consensus 86 ~~~~L~~~~~~~~~~~~~~~~~~~~~~i~~~l~~lH----~~~i~H~dl~p~Nili~~~~~~kl~dfg~~~~~~~~~-~~ 160 (267)
T 3t9t_A 86 EHGCLSDYLRTQRGLFAAETLLGMCLDVCEGMAYLE----EACVIHRDLAARNCLVGENQVIKVSDFGMTRFVLDDQ-YT 160 (267)
T ss_dssp TTCBHHHHHHHTTTCCCHHHHHHHHHHHHHHHHHHH----HTTCCCSSCCGGGEEECGGGCEEECCTTGGGGBCCHH-HH
T ss_pred CCCcHHHHHhhCcccCCHHHHHHHHHHHHHHHHHHH----hCCcccCCCchheEEECCCCCEEEccccccccccccc-cc
Confidence 999999999987777899999999999999999999 6789999999999999999999999999998764321 11
Q ss_pred eeeccccCccccCCCccCCCCcCcccchhhHHHHHHHHHh-CCCCCCccccCcchHHHHHHhhCCCchhhhccccchhhh
Q 005040 586 IQTMTMATIGYMAPEYGSEGIVSTKCDVYSYGVLLMETFT-EKKPTDEMFTGEMSLRRWVKESLPHRLTEVVDANLVREE 664 (717)
Q Consensus 586 ~~~~~~~t~~y~aPE~~~~~~~~~~~Dvws~G~il~el~t-g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 664 (717)
......+|+.|+|||+..+..++.++||||+|+++|||++ |+.||..... ......+.......
T Consensus 161 ~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~~g~~p~~~~~~--~~~~~~i~~~~~~~------------- 225 (267)
T 3t9t_A 161 SSTGTKFPVKWASPEVFSFSRYSSKSDVWSFGVLMWEVFSEGKIPYENRSN--SEVVEDISTGFRLY------------- 225 (267)
T ss_dssp STTSTTCCGGGCCHHHHHHCCCCHHHHHHHHHHHHHHHHTTSCCTTTTCCH--HHHHHHHHTTCCCC-------------
T ss_pred ccccccccccccChhhhcCCCccchhchhhhHHHHHHHhccCCCCCCCCCH--HHHHHHHhcCCcCC-------------
Confidence 1223456788999999988889999999999999999999 8999875321 11111111111000
Q ss_pred hhhhhhHHHHHHHHHHHhhccCCCCCCCCCHHHHHHHHHHhHHh
Q 005040 665 QAFSDKMDCLFSIMDLALDCCMDTPHKRIHMTDAAAKLRKIKAK 708 (717)
Q Consensus 665 ~~~~~~~~~~~~l~~li~~cl~~~P~~Rpt~~ev~~~L~~~~~~ 708 (717)
.+..++..+.+++.+||+.||++|||++|+++.|+++.++
T Consensus 226 ----~~~~~~~~l~~li~~~l~~~p~~Rps~~~ll~~L~~l~~~ 265 (267)
T 3t9t_A 226 ----KPRLASTHVYQIMNHCWRERPEDRPAFSRLLRQLAEIAES 265 (267)
T ss_dssp ----CCTTSCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHHHC
T ss_pred ----CCccCcHHHHHHHHHHccCChhhCcCHHHHHHHHHHHHhc
Confidence 0112345688999999999999999999999999998764
No 85
>2xir_A Vascular endothelial growth factor receptor 2; angiogenesis, nucleotide-binding, inhibitor, phosphorylation receptor, transferase, transmembrane; HET: 00J; 1.50A {Homo sapiens} PDB: 1vr2_A* 1ywn_A* 3vnt_A* 3c7q_A* 2oh4_A* 3u6j_A* 3efl_A* 2p2i_A* 3cjf_A* 3cjg_A* 3ewh_A* 2qu5_A* 2qu6_A* 2rl5_A* 3b8q_A* 3b8r_A* 2p2h_A* 3cp9_A* 3cpb_A* 3cpc_A* ...
Probab=100.00 E-value=4.6e-41 Score=349.82 Aligned_cols=272 Identities=26% Similarity=0.398 Sum_probs=219.0
Q ss_pred CCHHHHHHHhccCCccccccccccEEEEEEEe------cCCCeEEEEEechhh-HHHHHHHHHHHHHHHhc-CCCceeeE
Q 005040 417 TSYLDIRRATDEFNECNLLGTGGFGSVYKGTL------SDGTNVAIKIFNLQL-ERAFRSFDSECEILRNV-RHRNLLKI 488 (717)
Q Consensus 417 ~~~~~~~~~~~~~~~~~~lg~G~~g~V~~~~~------~~~~~vavK~~~~~~-~~~~~~~~~e~~~l~~l-~hpniv~~ 488 (717)
..........++|++.+.||+|+||.||+|.+ .+++.||||++.... ....+.+.+|+++++++ +||||+++
T Consensus 17 ~~~~~~~~~~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~~hp~iv~~ 96 (316)
T 2xir_A 17 YDASKWEFPRDRLKLGKPLGRGAFGQVIEADAFGIDKTATCRTVAVKMLKEGATHSEHRALMSELKILIHIGHHLNVVNL 96 (316)
T ss_dssp CCHHHHBCCGGGEEEEEEEEECSSEEEEEEEEESSSSTTCEEEEEEEEECTTCCHHHHHHHHHHHHHHHHHCCCTTBCCE
T ss_pred ccccceecchhheeeeeEEcCCCceeEEEEEEecCCccccceEEEEEecccCCCcHHHHHHHHHHHHHHhcccCCCeeeE
Confidence 34444555668999999999999999999984 256889999997654 33456788999999999 79999999
Q ss_pred eeeeecCC-eeEEEEEccCCCCHHHHHhhCCC---------------CCCHHHHHHHHHHHHHHHHHHhhcCCCCCeEec
Q 005040 489 LGSCSNLD-FKALVLEFMPNGSLEKWLYSHNY---------------FLDILQRLNIMIDVGSALEYLHHCHSSAPIIHC 552 (717)
Q Consensus 489 ~~~~~~~~-~~~lv~e~~~~g~L~~~l~~~~~---------------~~~~~~~~~i~~~i~~~l~~LH~~~~~~~ivH~ 552 (717)
++++...+ ..++||||+++|+|.+++..... .+++..+..++.|+++||.||| +.+|+||
T Consensus 97 ~~~~~~~~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~qi~~al~~lH----~~~i~H~ 172 (316)
T 2xir_A 97 LGACTKPGGPLMVIVEFCKFGNLSTYLRSKRNEFVPYKVAPEDLYKDFLTLEHLICYSFQVAKGMEFLA----SRKCIHR 172 (316)
T ss_dssp EEEECCTTSCCEEEEECCTTEEHHHHHHTCTTSEECC-------CTTCEEHHHHHHHHHHHHHHHHHHH----HTTCCCS
T ss_pred EEEEecCCCceEEEEEcCCCCcHHHHHHhcccccccccccchhhhccccCHHHHHHHHHHHHHHHHHHH----hCCcccc
Confidence 99987654 58999999999999999986543 2789999999999999999999 6789999
Q ss_pred CCCCCCeeeCCCCcEEEeeeccccccCCCCCceeeeccccCccccCCCccCCCCcCcccchhhHHHHHHHHHh-CCCCCC
Q 005040 553 DLKPTNILLDENMVAHVSDFGISKLLGEGEDSVIQTMTMATIGYMAPEYGSEGIVSTKCDVYSYGVLLMETFT-EKKPTD 631 (717)
Q Consensus 553 dlk~~Nill~~~~~~kl~Dfgl~~~~~~~~~~~~~~~~~~t~~y~aPE~~~~~~~~~~~Dvws~G~il~el~t-g~~p~~ 631 (717)
||||+||+++.++.+||+|||++................+|+.|+|||++.+..++.++||||||+++|||++ |+.||.
T Consensus 173 dikp~Nil~~~~~~~kl~Dfg~~~~~~~~~~~~~~~~~~~t~~y~aPE~~~~~~~~~~~Di~slG~il~~l~t~g~~p~~ 252 (316)
T 2xir_A 173 DLAARNILLSEKNVVKICDFGLARDIYKDPDYVRKGDARLPLKWMAPETIFDRVYTIQSDVWSFGVLLWEIFSLGASPYP 252 (316)
T ss_dssp CCSGGGEEECGGGCEEECCCGGGSCTTTCTTSEEETTEEECGGGCCHHHHHHCCCCHHHHHHHHHHHHHHHHTTSCCSST
T ss_pred cCccceEEECCCCCEEECCCccccccccCccceeccCCCcceeecCchhhccccccchhHHHHHHHHHHHHHhCCCCCCc
Confidence 9999999999999999999999987755444444445567899999999988899999999999999999998 999997
Q ss_pred ccccCcchHHHHHHhhCCCchhhhccccchhhhhhhhhhHHHHHHHHHHHhhccCCCCCCCCCHHHHHHHHHHhHHhhc
Q 005040 632 EMFTGEMSLRRWVKESLPHRLTEVVDANLVREEQAFSDKMDCLFSIMDLALDCCMDTPHKRIHMTDAAAKLRKIKAKFL 710 (717)
Q Consensus 632 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~cl~~~P~~Rpt~~ev~~~L~~~~~~~~ 710 (717)
...... .....+....... ....++.++.+++.+||+.||++|||+.|+++.|+++.+...
T Consensus 253 ~~~~~~-~~~~~~~~~~~~~-----------------~~~~~~~~l~~li~~~l~~dp~~Rps~~ell~~L~~~~~~~~ 313 (316)
T 2xir_A 253 GVKIDE-EFCRRLKEGTRMR-----------------APDYTTPEMYQTMLDCWHGEPSQRPTFSELVEHLGNLLQANA 313 (316)
T ss_dssp TCCCSH-HHHHHHHHTCCCC-----------------CCTTCCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHHHHHC
T ss_pred ccchhH-HHHHHhccCccCC-----------------CCCCCCHHHHHHHHHHcCCChhhCcCHHHHHHHHHHHHhhhc
Confidence 643222 1111111111100 011234568899999999999999999999999999876543
No 86
>1k9a_A Carboxyl-terminal SRC kinase; COOH-terminal SRC kinase, CSK, SFK, signal transduction, SH2, SH3, SRC homology, tyrosine kinase; 2.50A {Rattus norvegicus} SCOP: b.34.2.1 d.93.1.1 d.144.1.7 PDB: 1jeg_A
Probab=100.00 E-value=3.9e-41 Score=366.72 Aligned_cols=252 Identities=28% Similarity=0.436 Sum_probs=208.1
Q ss_pred hccCCccccccccccEEEEEEEecCCCeEEEEEechhhHHHHHHHHHHHHHHHhcCCCceeeEeeeeecCC-eeEEEEEc
Q 005040 426 TDEFNECNLLGTGGFGSVYKGTLSDGTNVAIKIFNLQLERAFRSFDSECEILRNVRHRNLLKILGSCSNLD-FKALVLEF 504 (717)
Q Consensus 426 ~~~~~~~~~lg~G~~g~V~~~~~~~~~~vavK~~~~~~~~~~~~~~~e~~~l~~l~hpniv~~~~~~~~~~-~~~lv~e~ 504 (717)
.++|++.+.||+|+||.||+|.++ ++.||||+++... ..+.+.+|++++++++||||+++++++.+.+ ..++||||
T Consensus 192 ~~~~~~~~~lG~G~fg~V~~~~~~-~~~vavK~~~~~~--~~~~~~~E~~~l~~l~h~niv~~~~~~~~~~~~~~iv~e~ 268 (450)
T 1k9a_A 192 MKELKLLQTIGKGEFGDVMLGDYR-GNKVAVKCIKNDA--TAQAFLAEASVMTQLRHSNLVQLLGVIVEEKGGLYIVTEY 268 (450)
T ss_dssp GGGEEEEEEEEECSSEEEEEEEET-TEEEEEEEESSCT--TSHHHHHHHHHHHTCCCTTBCCEEEEEECTTSCEEEEEEC
T ss_pred hHHeEEEeeecCcCCeeEEEEEec-CCeEEEEEeCCch--HHHHHHHHHHHHHhccCCCEEEEEEEEEcCCCceEEEEEe
Confidence 468889999999999999999985 7899999997553 3467889999999999999999999986654 78999999
Q ss_pred cCCCCHHHHHhhCCC-CCCHHHHHHHHHHHHHHHHHHhhcCCCCCeEecCCCCCCeeeCCCCcEEEeeeccccccCCCCC
Q 005040 505 MPNGSLEKWLYSHNY-FLDILQRLNIMIDVGSALEYLHHCHSSAPIIHCDLKPTNILLDENMVAHVSDFGISKLLGEGED 583 (717)
Q Consensus 505 ~~~g~L~~~l~~~~~-~~~~~~~~~i~~~i~~~l~~LH~~~~~~~ivH~dlk~~Nill~~~~~~kl~Dfgl~~~~~~~~~ 583 (717)
+++|+|.++++..+. .+++..+..++.|+++||+||| +.+|+||||||+|||++.++.+||+|||+++......
T Consensus 269 ~~~g~L~~~l~~~~~~~~~~~~~~~~~~qi~~~l~~LH----~~~ivHrDlkp~Nill~~~~~~kl~DfG~a~~~~~~~- 343 (450)
T 1k9a_A 269 MAKGSLVDYLRSRGRSVLGGDCLLKFSLDVCEAMEYLE----GNNFVHRDLAARNVLVSEDNVAKVSDFGLTKEASSTQ- 343 (450)
T ss_dssp CTTCBHHHHHHHHCTTTCCHHHHHHHHHHHHHHHHHHH----HTTEECSCCCGGGEEECTTSCEEECCCTTCEECC----
T ss_pred cCCCcHHHHHHhcCCCCCCHHHHHHHHHHHHHHHHHHH----hCCeeCCCCCHhhEEECCCCCEEEeeCCCcccccccc-
Confidence 999999999986543 4799999999999999999999 6789999999999999999999999999998643221
Q ss_pred ceeeeccccCccccCCCccCCCCcCcccchhhHHHHHHHHHh-CCCCCCccccCcchHHHHHHhhCCCchhhhccccchh
Q 005040 584 SVIQTMTMATIGYMAPEYGSEGIVSTKCDVYSYGVLLMETFT-EKKPTDEMFTGEMSLRRWVKESLPHRLTEVVDANLVR 662 (717)
Q Consensus 584 ~~~~~~~~~t~~y~aPE~~~~~~~~~~~Dvws~G~il~el~t-g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 662 (717)
....+++.|+|||.+.+..++.++||||||+++|||++ |+.||......+ ....+.....
T Consensus 344 ----~~~~~~~~y~aPE~~~~~~~~~~sDvwslG~~l~el~t~g~~P~~~~~~~~--~~~~i~~~~~------------- 404 (450)
T 1k9a_A 344 ----DTGKLPVKWTAPEALREKKFSTKSDVWSFGILLWEIYSFGRVPYPRIPLKD--VVPRVEKGYK------------- 404 (450)
T ss_dssp -------CCCTTTSCHHHHHSSCCCHHHHHHHHHHHHHHHHTTTCCSSTTSCTTT--HHHHHHTTCC-------------
T ss_pred ----cCCCCCcceeCHHHhcCCCCCcHHHHHHHHHHHHHHHhCCCCCCCCCCHHH--HHHHHHcCCC-------------
Confidence 22356889999999999999999999999999999998 999997643221 1111111100
Q ss_pred hhhhhhhhHHHHHHHHHHHhhccCCCCCCCCCHHHHHHHHHHhHHh
Q 005040 663 EEQAFSDKMDCLFSIMDLALDCCMDTPHKRIHMTDAAAKLRKIKAK 708 (717)
Q Consensus 663 ~~~~~~~~~~~~~~l~~li~~cl~~~P~~Rpt~~ev~~~L~~~~~~ 708 (717)
...+..++.++.++|.+||+.||++|||+.++++.|+++...
T Consensus 405 ----~~~p~~~~~~l~~li~~cl~~dp~~Rpt~~~l~~~L~~i~~~ 446 (450)
T 1k9a_A 405 ----MDAPDGCPPAVYDVMKNCWHLDAATRPTFLQLREQLEHIRTH 446 (450)
T ss_dssp ----CCCCTTCCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHHHT
T ss_pred ----CCCCCcCCHHHHHHHHHHcCCChhHCcCHHHHHHHHHHHHHh
Confidence 011224567789999999999999999999999999998754
No 87
>3lxp_A Non-receptor tyrosine-protein kinase TYK2; JAK3, inflammation, cancer, PAN inhibitor, ATP-binding nucleotide-binding, phosphoprotein, SH2 domain; HET: PTR IZA; 1.65A {Homo sapiens} PDB: 3lxn_A* 3nz0_A* 3nyx_A* 4e20_A* 4e1z_A*
Probab=100.00 E-value=4.8e-41 Score=349.63 Aligned_cols=269 Identities=25% Similarity=0.418 Sum_probs=213.0
Q ss_pred CCccccccccccEEEEEEEec-----CCCeEEEEEechhh-HHHHHHHHHHHHHHHhcCCCceeeEeeeeec--CCeeEE
Q 005040 429 FNECNLLGTGGFGSVYKGTLS-----DGTNVAIKIFNLQL-ERAFRSFDSECEILRNVRHRNLLKILGSCSN--LDFKAL 500 (717)
Q Consensus 429 ~~~~~~lg~G~~g~V~~~~~~-----~~~~vavK~~~~~~-~~~~~~~~~e~~~l~~l~hpniv~~~~~~~~--~~~~~l 500 (717)
|++.+.||+|+||.||++.++ +++.||||++.... ....+.+.+|++++++++||||+++++++.+ ....++
T Consensus 33 ~~~~~~lG~G~~g~V~~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~~~l 112 (318)
T 3lxp_A 33 LKKIRDLGEGHFGKVSLYCYDPTNDGTGEMVAVKALKADAGPQHRSGWKQEIDILRTLYHEHIIKYKGCCEDAGAASLQL 112 (318)
T ss_dssp EEEEEEEEECSSEEEEEEEECSCC--CCEEEEEEEECTTCCHHHHHHHHHHHHHHHHCCCTTBCCEEEEEEETTTTEEEE
T ss_pred HhhhheecCCCCeEEEEEEEccCCCCCCcEEEEEEeccccChHHHHHHHHHHHHHHhCCCcchhhEEEEEecCCCceEEE
Confidence 488999999999999998753 68889999997654 3445678999999999999999999999977 467899
Q ss_pred EEEccCCCCHHHHHhhCCCCCCHHHHHHHHHHHHHHHHHHhhcCCCCCeEecCCCCCCeeeCCCCcEEEeeeccccccCC
Q 005040 501 VLEFMPNGSLEKWLYSHNYFLDILQRLNIMIDVGSALEYLHHCHSSAPIIHCDLKPTNILLDENMVAHVSDFGISKLLGE 580 (717)
Q Consensus 501 v~e~~~~g~L~~~l~~~~~~~~~~~~~~i~~~i~~~l~~LH~~~~~~~ivH~dlk~~Nill~~~~~~kl~Dfgl~~~~~~ 580 (717)
||||+++|+|.+++.... +++..+..++.|++.||+||| +.+|+||||||+||+++.++.+||+|||++.....
T Consensus 113 v~e~~~~~~L~~~l~~~~--~~~~~~~~i~~~l~~~l~~LH----~~~ivH~Dikp~Nil~~~~~~~kl~Dfg~a~~~~~ 186 (318)
T 3lxp_A 113 VMEYVPLGSLRDYLPRHS--IGLAQLLLFAQQICEGMAYLH----AQHYIHRDLAARNVLLDNDRLVKIGDFGLAKAVPE 186 (318)
T ss_dssp EECCCTTCBHHHHGGGSC--CCHHHHHHHHHHHHHHHHHHH----HTTEECSCCSGGGEEECTTCCEEECCGGGCEECCT
T ss_pred EEecccCCcHHHHHhhCC--CCHHHHHHHHHHHHHHHHHHH----hCCccCCCCchheEEEcCCCCEEECCccccccccc
Confidence 999999999999998765 899999999999999999999 67899999999999999999999999999988765
Q ss_pred CCCc-eeeeccccCccccCCCccCCCCcCcccchhhHHHHHHHHHhCCCCCCccccCcchHHHHHHhhCCCc------hh
Q 005040 581 GEDS-VIQTMTMATIGYMAPEYGSEGIVSTKCDVYSYGVLLMETFTEKKPTDEMFTGEMSLRRWVKESLPHR------LT 653 (717)
Q Consensus 581 ~~~~-~~~~~~~~t~~y~aPE~~~~~~~~~~~Dvws~G~il~el~tg~~p~~~~~~~~~~~~~~~~~~~~~~------~~ 653 (717)
.... .......+|..|+|||++.+..++.++||||+|+++|||++|+.||........ .+. ..... ..
T Consensus 187 ~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~ll~g~~p~~~~~~~~~---~~~--~~~~~~~~~~~~~ 261 (318)
T 3lxp_A 187 GHEYYRVREDGDSPVFWYAPECLKEYKFYYASDVWSFGVTLYELLTHCDSSQSPPTKFL---ELI--GIAQGQMTVLRLT 261 (318)
T ss_dssp TCSEEEC---CCCCGGGCCHHHHHHCEEEHHHHHHHHHHHHHHHHTTTCGGGSHHHHHH---HHH--CSCCHHHHHHHHH
T ss_pred cccccccccCCCCCceeeChHHhcCCCCCcHHHHHHHHHHHHHHHhCCCcccccchhhh---hhh--cccccchhHHHHH
Confidence 4322 223344678889999999988999999999999999999999999865221100 000 00000 00
Q ss_pred hhccccchhhhhhhhhhHHHHHHHHHHHhhccCCCCCCCCCHHHHHHHHHHhHHhhccch
Q 005040 654 EVVDANLVREEQAFSDKMDCLFSIMDLALDCCMDTPHKRIHMTDAAAKLRKIKAKFLDDV 713 (717)
Q Consensus 654 ~~~~~~~~~~~~~~~~~~~~~~~l~~li~~cl~~~P~~Rpt~~ev~~~L~~~~~~~~~~~ 713 (717)
+.+.... .......++.++.+++.+||+.||++|||+.|+++.|+++.+++.++.
T Consensus 262 ~~~~~~~-----~~~~~~~~~~~l~~li~~~l~~dP~~Rps~~ell~~L~~l~~~~~~~~ 316 (318)
T 3lxp_A 262 ELLERGE-----RLPRPDKCPAEVYHLMKNCWETEASFRPTFENLIPILKTVHEKYQGQA 316 (318)
T ss_dssp HHHHTTC-----CCCCCTTCCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHHHHHHC--
T ss_pred HHHhccc-----CCCCCccccHHHHHHHHHHcCCCcccCcCHHHHHHHHHHHHHhhccCC
Confidence 1111100 111223456779999999999999999999999999999999887654
No 88
>4e5w_A Tyrosine-protein kinase JAK1; kinase domain, transferase-transferase inhibit complex; HET: PTR 0NT; 1.86A {Homo sapiens} PDB: 4e4l_A* 4e4n_A* 4ehz_A* 4ei4_A* 4fk6_A* 3eyg_A* 3eyh_A*
Probab=100.00 E-value=2.9e-41 Score=348.90 Aligned_cols=269 Identities=23% Similarity=0.380 Sum_probs=209.5
Q ss_pred ccCCccccccccccEEEEEEEe-----cCCCeEEEEEechhh-HHHHHHHHHHHHHHHhcCCCceeeEeeeeecC--Cee
Q 005040 427 DEFNECNLLGTGGFGSVYKGTL-----SDGTNVAIKIFNLQL-ERAFRSFDSECEILRNVRHRNLLKILGSCSNL--DFK 498 (717)
Q Consensus 427 ~~~~~~~~lg~G~~g~V~~~~~-----~~~~~vavK~~~~~~-~~~~~~~~~e~~~l~~l~hpniv~~~~~~~~~--~~~ 498 (717)
..|+..+.||+|+||.||+|++ .+++.||+|++.... ....+.+.+|++++++++||||+++++++.+. ...
T Consensus 21 ~~~~~~~~lg~G~~g~V~~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~~~~~~~ 100 (302)
T 4e5w_A 21 RFLKRIRDLGEGHFGKVELCRYDPEGDNTGEQVAVKSLKPESGGNHIADLKKEIEILRNLYHENIVKYKGICTEDGGNGI 100 (302)
T ss_dssp GGEEEEEEEEECSSEEEEEEEECTTSSSCSEEEEEEEEC-----CCHHHHHHHHHHHHTCCCTTBCCEEEEEEC---CCE
T ss_pred hhhhhhhccCCCCceEEEEEEEccccCccCeEEEEEEecccccchhHHHHHHHHHHHHhCCCCCeeeeeeEEecCCCceE
Confidence 5688999999999999999983 368899999997554 23446788999999999999999999999776 668
Q ss_pred EEEEEccCCCCHHHHHhhCCCCCCHHHHHHHHHHHHHHHHHHhhcCCCCCeEecCCCCCCeeeCCCCcEEEeeecccccc
Q 005040 499 ALVLEFMPNGSLEKWLYSHNYFLDILQRLNIMIDVGSALEYLHHCHSSAPIIHCDLKPTNILLDENMVAHVSDFGISKLL 578 (717)
Q Consensus 499 ~lv~e~~~~g~L~~~l~~~~~~~~~~~~~~i~~~i~~~l~~LH~~~~~~~ivH~dlk~~Nill~~~~~~kl~Dfgl~~~~ 578 (717)
++||||+++|+|.+++......+++..+..++.|++.||+||| +.+|+||||||+||+++.++.+||+|||++...
T Consensus 101 ~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~i~~~l~~lH----~~~i~H~dikp~Nil~~~~~~~kl~Dfg~~~~~ 176 (302)
T 4e5w_A 101 KLIMEFLPSGSLKEYLPKNKNKINLKQQLKYAVQICKGMDYLG----SRQYVHRDLAARNVLVESEHQVKIGDFGLTKAI 176 (302)
T ss_dssp EEEEECCTTCBHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHHH----HTTEECSCCSGGGEEEEETTEEEECCCTTCEEC
T ss_pred EEEEEeCCCCcHHHHHHhccccCCHHHHHHHHHHHHHHHHHhh----cCCcccCCCchheEEEcCCCCEEECcccccccc
Confidence 9999999999999999776666999999999999999999999 678999999999999999999999999999887
Q ss_pred CCCCCc-eeeeccccCccccCCCccCCCCcCcccchhhHHHHHHHHHhCCCCCCccccCcchHHHHHHhhCCCch---hh
Q 005040 579 GEGEDS-VIQTMTMATIGYMAPEYGSEGIVSTKCDVYSYGVLLMETFTEKKPTDEMFTGEMSLRRWVKESLPHRL---TE 654 (717)
Q Consensus 579 ~~~~~~-~~~~~~~~t~~y~aPE~~~~~~~~~~~Dvws~G~il~el~tg~~p~~~~~~~~~~~~~~~~~~~~~~~---~~ 654 (717)
...... .......+|..|+|||++.+..++.++||||+|+++|||++|+.|+.... ..+.....+... ..
T Consensus 177 ~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~g~~p~~~~~------~~~~~~~~~~~~~~~~~ 250 (302)
T 4e5w_A 177 ETDKEYYTVKDDRDSPVFWYAPECLMQSKFYIASDVWSFGVTLHELLTYCDSDSSPM------ALFLKMIGPTHGQMTVT 250 (302)
T ss_dssp CTTCCEEECCCCTTCCGGGCCHHHHHHCEEEHHHHHHHHHHHHHHHHTTTCGGGSHH------HHHHHHHCSCCGGGHHH
T ss_pred cCCCcceeccCCCCCCccccCCeeecCCCCCcchhHHHHHHHHHHHHHccCCCcchh------hHHhhccCCcccccCHH
Confidence 554322 22334567888999999988899999999999999999999999864321 111111111100 00
Q ss_pred hccccchhhhhhhhhhHHHHHHHHHHHhhccCCCCCCCCCHHHHHHHHHHhH
Q 005040 655 VVDANLVREEQAFSDKMDCLFSIMDLALDCCMDTPHKRIHMTDAAAKLRKIK 706 (717)
Q Consensus 655 ~~~~~~~~~~~~~~~~~~~~~~l~~li~~cl~~~P~~Rpt~~ev~~~L~~~~ 706 (717)
.+...+. ..........++.++.+++.+||+.||++|||+.|+++.|+++.
T Consensus 251 ~~~~~~~-~~~~~~~~~~~~~~l~~li~~~l~~dp~~Rps~~~ll~~L~~ll 301 (302)
T 4e5w_A 251 RLVNTLK-EGKRLPCPPNCPDEVYQLMRKCWEFQPSNRTSFQNLIEGFEALL 301 (302)
T ss_dssp HHHHHHH-TTCCCCCCTTCCHHHHHHHHHTTCSSGGGSCCHHHHHHHHHHHH
T ss_pred HHHHHHh-ccCCCCCCCCCCHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHh
Confidence 0000000 00011112245577899999999999999999999999999875
No 89
>3dtc_A Mitogen-activated protein kinase kinase kinase 9; mixed-lineage kinase, MLK family, MLK1 and MLK3 subtype selective inhibitors; HET: VIN; 2.60A {Homo sapiens} SCOP: d.144.1.0
Probab=100.00 E-value=2.3e-41 Score=343.87 Aligned_cols=251 Identities=28% Similarity=0.448 Sum_probs=194.2
Q ss_pred hccCCccccccccccEEEEEEEecCCCeEEEEEechhhH----HHHHHHHHHHHHHHhcCCCceeeEeeeeecCCeeEEE
Q 005040 426 TDEFNECNLLGTGGFGSVYKGTLSDGTNVAIKIFNLQLE----RAFRSFDSECEILRNVRHRNLLKILGSCSNLDFKALV 501 (717)
Q Consensus 426 ~~~~~~~~~lg~G~~g~V~~~~~~~~~~vavK~~~~~~~----~~~~~~~~e~~~l~~l~hpniv~~~~~~~~~~~~~lv 501 (717)
.++|+..+.||+|+||.||+|.+. ++.||||++..... ...+.+.+|+++++.++||||+++++++.+.+..++|
T Consensus 6 ~~~~~~~~~lg~G~~g~V~~~~~~-~~~vavK~~~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~lv 84 (271)
T 3dtc_A 6 FAELTLEEIIGIGGFGKVYRAFWI-GDEVAVKAARHDPDEDISQTIENVRQEAKLFAMLKHPNIIALRGVCLKEPNLCLV 84 (271)
T ss_dssp TTSEEEEEEEEEETTEEEEEEEET-TEEEEEEEC----------CHHHHHHHHHHHHHCCCTTBCCEEEEECCC--CEEE
T ss_pred hhheeeeeeeccCCCeEEEEEEEc-CCeEEEEEEecCCcccHHHHHHHHHHHHHHHHhcCCCCEeeEEEEEecCCceEEE
Confidence 368899999999999999999984 88999999875432 2346788999999999999999999999999999999
Q ss_pred EEccCCCCHHHHHhhCCCCCCHHHHHHHHHHHHHHHHHHhhcCCCCC---eEecCCCCCCeeeCC--------CCcEEEe
Q 005040 502 LEFMPNGSLEKWLYSHNYFLDILQRLNIMIDVGSALEYLHHCHSSAP---IIHCDLKPTNILLDE--------NMVAHVS 570 (717)
Q Consensus 502 ~e~~~~g~L~~~l~~~~~~~~~~~~~~i~~~i~~~l~~LH~~~~~~~---ivH~dlk~~Nill~~--------~~~~kl~ 570 (717)
|||+++++|.+++... .+++..+..++.|+++||.|||+ .+ |+||||||+||+++. ++.+||+
T Consensus 85 ~e~~~~~~L~~~~~~~--~~~~~~~~~i~~~l~~~l~~lH~----~~~~~i~H~dikp~Nil~~~~~~~~~~~~~~~kl~ 158 (271)
T 3dtc_A 85 MEFARGGPLNRVLSGK--RIPPDILVNWAVQIARGMNYLHD----EAIVPIIHRDLKSSNILILQKVENGDLSNKILKIT 158 (271)
T ss_dssp EECCTTEEHHHHHTSS--CCCHHHHHHHHHHHHHHHHHHHH----SSSSCCCCSCCSGGGEEESSCCSSSCCSSCCEEEC
T ss_pred EEcCCCCCHHHHhhcC--CCCHHHHHHHHHHHHHHHHHHHh----CCCCceeecCCchHHEEEecccccccccCcceEEc
Confidence 9999999999998754 48999999999999999999994 55 999999999999986 7789999
Q ss_pred eeccccccCCCCCceeeeccccCccccCCCccCCCCcCcccchhhHHHHHHHHHhCCCCCCccccCcchHHHHHHhhCCC
Q 005040 571 DFGISKLLGEGEDSVIQTMTMATIGYMAPEYGSEGIVSTKCDVYSYGVLLMETFTEKKPTDEMFTGEMSLRRWVKESLPH 650 (717)
Q Consensus 571 Dfgl~~~~~~~~~~~~~~~~~~t~~y~aPE~~~~~~~~~~~Dvws~G~il~el~tg~~p~~~~~~~~~~~~~~~~~~~~~ 650 (717)
|||++........ ....||+.|+|||...+..++.++||||+|+++|||++|+.||....... ........
T Consensus 159 Dfg~~~~~~~~~~----~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~~l~~l~~g~~p~~~~~~~~--~~~~~~~~--- 229 (271)
T 3dtc_A 159 DFGLAREWHRTTK----MSAAGAYAWMAPEVIRASMFSKGSDVWSYGVLLWELLTGEVPFRGIDGLA--VAYGVAMN--- 229 (271)
T ss_dssp CCCC-----------------CCGGGSCHHHHHHCCCSHHHHHHHHHHHHHHHHHCCCTTTTSCHHH--HHHHHHTS---
T ss_pred cCCcccccccccc----cCCCCccceeCHHHhccCCCCchhhHHHHHHHHHHHHhCCCCCCCCCHHH--HHHhhhcC---
Confidence 9999986643221 23468999999999988889999999999999999999999997632211 11111100
Q ss_pred chhhhccccchhhhhhhhhhHHHHHHHHHHHhhccCCCCCCCCCHHHHHHHHHHh
Q 005040 651 RLTEVVDANLVREEQAFSDKMDCLFSIMDLALDCCMDTPHKRIHMTDAAAKLRKI 705 (717)
Q Consensus 651 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~cl~~~P~~Rpt~~ev~~~L~~~ 705 (717)
. . ..+....++..+.+++.+||+.||++|||+.|+++.|+++
T Consensus 230 ~--------~-----~~~~~~~~~~~~~~li~~~l~~~p~~Rps~~e~l~~L~~l 271 (271)
T 3dtc_A 230 K--------L-----ALPIPSTCPEPFAKLMEDCWNPDPHSRPSFTNILDQLTTI 271 (271)
T ss_dssp C--------C-----CCCCCTTCCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHC-
T ss_pred C--------C-----CCCCCcccCHHHHHHHHHHhcCCcccCcCHHHHHHHHhcC
Confidence 0 0 0001123446688999999999999999999999999864
No 90
>3v8s_A RHO-associated protein kinase 1; dimerization, myosin, transferase, inhibitor, transf transferase inhibitor complex; HET: 0HD; 2.29A {Homo sapiens} PDB: 3twj_A* 3tv7_A* 2etr_A* 2esm_A* 2eto_A* 2etk_A* 3d9v_A* 3ncz_A* 3ndm_A* 2v55_A* 2f2u_A* 2h9v_A*
Probab=100.00 E-value=1.8e-41 Score=362.39 Aligned_cols=258 Identities=21% Similarity=0.279 Sum_probs=207.3
Q ss_pred HHHHHhccCCccccccccccEEEEEEEec-CCCeEEEEEechhhH---HHHHHHHHHHHHHHhcCCCceeeEeeeeecCC
Q 005040 421 DIRRATDEFNECNLLGTGGFGSVYKGTLS-DGTNVAIKIFNLQLE---RAFRSFDSECEILRNVRHRNLLKILGSCSNLD 496 (717)
Q Consensus 421 ~~~~~~~~~~~~~~lg~G~~g~V~~~~~~-~~~~vavK~~~~~~~---~~~~~~~~e~~~l~~l~hpniv~~~~~~~~~~ 496 (717)
+++...++|++.+.||+|+||.||+|+.+ +++.||+|++.+... ...+.+.+|+.+++.++||||+++++++.+.+
T Consensus 63 ~~~~~~~~y~~~~~LG~G~fG~V~~~~~~~~~~~~AiK~~~k~~~~~~~~~~~~~~E~~il~~l~hp~Iv~l~~~~~~~~ 142 (410)
T 3v8s_A 63 DLRMKAEDYEVVKVIGRGAFGEVQLVRHKSTRKVYAMKLLSKFEMIKRSDSAFFWEERDIMAFANSPWVVQLFYAFQDDR 142 (410)
T ss_dssp HHSCCGGGEEEEEEEEECSSEEEEEEEETTTCCEEEEEEEEHHHHHHTCCCSTHHHHHHHHHHCCCTTBCCEEEEEECSS
T ss_pred hcccCccccEEEEEEEcCCCEEEEEEEECCCCcEEEEEEEehhhhhhhHHHHHHHHHHHHHHhCCCCCCCeEEEEEEECC
Confidence 34455689999999999999999999976 688999999976431 12234778999999999999999999999999
Q ss_pred eeEEEEEccCCCCHHHHHhhCCCCCCHHHHHHHHHHHHHHHHHHhhcCCCCCeEecCCCCCCeeeCCCCcEEEeeecccc
Q 005040 497 FKALVLEFMPNGSLEKWLYSHNYFLDILQRLNIMIDVGSALEYLHHCHSSAPIIHCDLKPTNILLDENMVAHVSDFGISK 576 (717)
Q Consensus 497 ~~~lv~e~~~~g~L~~~l~~~~~~~~~~~~~~i~~~i~~~l~~LH~~~~~~~ivH~dlk~~Nill~~~~~~kl~Dfgl~~ 576 (717)
..|+||||+++|+|.++++... +++..+..++.|++.||+||| +.+|+||||||+|||++.++++||+|||+++
T Consensus 143 ~~~lV~E~~~gg~L~~~l~~~~--~~e~~~~~~~~qi~~aL~~LH----~~givHrDLKp~NILl~~~g~ikL~DFG~a~ 216 (410)
T 3v8s_A 143 YLYMVMEYMPGGDLVNLMSNYD--VPEKWARFYTAEVVLALDAIH----SMGFIHRDVKPDNMLLDKSGHLKLADFGTCM 216 (410)
T ss_dssp EEEEEECCCTTEEHHHHHHHCC--CCHHHHHHHHHHHHHHHHHHH----HTTEECCCCSGGGEEECTTSCEEECCCTTCE
T ss_pred EEEEEEeCCCCCcHHHHHHcCC--CCHHHHHHHHHHHHHHHHHHH----HCCeEeccCCHHHeeECCCCCEEEeccceeE
Confidence 9999999999999999998754 899999999999999999999 6789999999999999999999999999998
Q ss_pred ccCCCCCceeeeccccCccccCCCccCCCC----cCcccchhhHHHHHHHHHhCCCCCCccccCcchHHHHHHhhCCCch
Q 005040 577 LLGEGEDSVIQTMTMATIGYMAPEYGSEGI----VSTKCDVYSYGVLLMETFTEKKPTDEMFTGEMSLRRWVKESLPHRL 652 (717)
Q Consensus 577 ~~~~~~~~~~~~~~~~t~~y~aPE~~~~~~----~~~~~Dvws~G~il~el~tg~~p~~~~~~~~~~~~~~~~~~~~~~~ 652 (717)
...... .......+||+.|+|||++.+.. ++.++|||||||++|||++|+.||.+.... ..........
T Consensus 217 ~~~~~~-~~~~~~~~gt~~Y~APE~l~~~~~~~~~~~~~DiwSlGvilyell~G~~Pf~~~~~~-~~~~~i~~~~----- 289 (410)
T 3v8s_A 217 KMNKEG-MVRCDTAVGTPDYISPEVLKSQGGDGYYGRECDWWSVGVFLYEMLVGDTPFYADSLV-GTYSKIMNHK----- 289 (410)
T ss_dssp ECCTTS-EEECCSCCSCGGGCCHHHHHTTTTTCEEETHHHHHHHHHHHHHHHHSSCTTCCSSHH-HHHHHHHTHH-----
T ss_pred eeccCC-cccccCCcCCccccCHHHhhccCCCcCCCCcceEecchHHHHHHHhCCCCCCCCChh-hHHHHHHhcc-----
Confidence 765432 22234567999999999876654 889999999999999999999999753211 1111111100
Q ss_pred hhhccccchhhhhhhhhhHHHHHHHHHHHhhccCCCCCC--CCCHHHHHHH
Q 005040 653 TEVVDANLVREEQAFSDKMDCLFSIMDLALDCCMDTPHK--RIHMTDAAAK 701 (717)
Q Consensus 653 ~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~cl~~~P~~--Rpt~~ev~~~ 701 (717)
....++....++.++.++|.+||..+|.+ ||+++|+++.
T Consensus 290 ----------~~~~~p~~~~~s~~~~~li~~lL~~~~~rlgR~~~~ei~~H 330 (410)
T 3v8s_A 290 ----------NSLTFPDDNDISKEAKNLICAFLTDREVRLGRNGVEEIKRH 330 (410)
T ss_dssp ----------HHCCCCTTCCCCHHHHHHHHHHSSCGGGCTTSSCHHHHHTS
T ss_pred ----------ccccCCCcccccHHHHHHHHHHccChhhhCCCCCHHHHhcC
Confidence 00011111234567889999999999988 9999998863
No 91
>2zv2_A Calcium/calmodulin-dependent protein kinase kinas; beta, camkk2, E.C.2.7.11.17, phosphorylation, AMPKK, metabolism, binding, calmodulin-binding; HET: 609; 2.40A {Homo sapiens}
Probab=100.00 E-value=2.2e-41 Score=349.01 Aligned_cols=249 Identities=25% Similarity=0.329 Sum_probs=196.0
Q ss_pred hccCCccccccccccEEEEEEEec-CCCeEEEEEechhhH--------------------------HHHHHHHHHHHHHH
Q 005040 426 TDEFNECNLLGTGGFGSVYKGTLS-DGTNVAIKIFNLQLE--------------------------RAFRSFDSECEILR 478 (717)
Q Consensus 426 ~~~~~~~~~lg~G~~g~V~~~~~~-~~~~vavK~~~~~~~--------------------------~~~~~~~~e~~~l~ 478 (717)
.++|++.+.||+|+||.||+|... +++.||||++..... ...+.+.+|+++++
T Consensus 12 ~~~y~~~~~lG~G~~g~Vy~a~~~~~~~~vavK~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~ 91 (298)
T 2zv2_A 12 LNQYTLKDEIGKGSYGVVKLAYNENDNTYYAMKVLSKKKLIRQAGFPRRPPPRGTRPAPGGCIQPRGPIEQVYQEIAILK 91 (298)
T ss_dssp ETTEEEEEEEEC--CCEEEEEEETTTTEEEEEEEEECC-------------------------------CHHHHHHHHHH
T ss_pred ecceEEEeEEeecCCEEEEEEEECCCCcEEEEEEeehhhhhhhcccccccccccccccccccccccchHHHHHHHHHHHH
Confidence 368999999999999999999875 789999999864321 12346888999999
Q ss_pred hcCCCceeeEeeeeec--CCeeEEEEEccCCCCHHHHHhhCCCCCCHHHHHHHHHHHHHHHHHHhhcCCCCCeEecCCCC
Q 005040 479 NVRHRNLLKILGSCSN--LDFKALVLEFMPNGSLEKWLYSHNYFLDILQRLNIMIDVGSALEYLHHCHSSAPIIHCDLKP 556 (717)
Q Consensus 479 ~l~hpniv~~~~~~~~--~~~~~lv~e~~~~g~L~~~l~~~~~~~~~~~~~~i~~~i~~~l~~LH~~~~~~~ivH~dlk~ 556 (717)
+++||||+++++++.+ .+..++||||+++++|.+++.. ..+++..+..++.|+++||+||| +.+|+||||||
T Consensus 92 ~l~h~~iv~~~~~~~~~~~~~~~lv~e~~~~~~l~~~~~~--~~~~~~~~~~~~~qi~~~l~~lH----~~~ivH~Dlkp 165 (298)
T 2zv2_A 92 KLDHPNVVKLVEVLDDPNEDHLYMVFELVNQGPVMEVPTL--KPLSEDQARFYFQDLIKGIEYLH----YQKIIHRDIKP 165 (298)
T ss_dssp TCCCTTBCCEEEEEECSSSSEEEEEEECCTTCBSCCSSCS--SCCCHHHHHHHHHHHHHHHHHHH----HTTEECCCCCG
T ss_pred hCCCCCCCeEEEEEEcCCCCEEEEEEecCCCCcHHHHhhc--CCCCHHHHHHHHHHHHHHHHHHH----HCCeeccCCCH
Confidence 9999999999999976 5688999999999999886543 34899999999999999999999 67899999999
Q ss_pred CCeeeCCCCcEEEeeeccccccCCCCCceeeeccccCccccCCCccCCCC---cCcccchhhHHHHHHHHHhCCCCCCcc
Q 005040 557 TNILLDENMVAHVSDFGISKLLGEGEDSVIQTMTMATIGYMAPEYGSEGI---VSTKCDVYSYGVLLMETFTEKKPTDEM 633 (717)
Q Consensus 557 ~Nill~~~~~~kl~Dfgl~~~~~~~~~~~~~~~~~~t~~y~aPE~~~~~~---~~~~~Dvws~G~il~el~tg~~p~~~~ 633 (717)
+||+++.++.+||+|||++........ ......||+.|+|||.+.+.. ++.++||||||+++|||++|+.||...
T Consensus 166 ~Nil~~~~~~~kl~Dfg~~~~~~~~~~--~~~~~~gt~~y~aPE~~~~~~~~~~~~~~Di~slG~~l~~l~~g~~pf~~~ 243 (298)
T 2zv2_A 166 SNLLVGEDGHIKIADFGVSNEFKGSDA--LLSNTVGTPAFMAPESLSETRKIFSGKALDVWAMGVTLYCFVFGQCPFMDE 243 (298)
T ss_dssp GGEEECTTSCEEECCCTTCEECSSSSC--EECCCCSCGGGCCGGGCCTTCCCEESHHHHHHHHHHHHHHHHHSSCSSCCS
T ss_pred HHEEECCCCCEEEecCCCccccccccc--cccCCcCCccccChhhhccCCCCCCCchhhhHhHHHHHHHHHHCCCCCCCc
Confidence 999999999999999999987654322 234457899999999887655 478899999999999999999999753
Q ss_pred ccCcchHHHHHHhhCCCchhhhccccchhhhhhhhhhHHHHHHHHHHHhhccCCCCCCCCCHHHHHH
Q 005040 634 FTGEMSLRRWVKESLPHRLTEVVDANLVREEQAFSDKMDCLFSIMDLALDCCMDTPHKRIHMTDAAA 700 (717)
Q Consensus 634 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~cl~~~P~~Rpt~~ev~~ 700 (717)
.. ......+..... ..+....++.++.+++.+||+.||++|||+.|+++
T Consensus 244 ~~--~~~~~~~~~~~~----------------~~~~~~~~~~~l~~li~~~l~~dp~~R~s~~e~l~ 292 (298)
T 2zv2_A 244 RI--MCLHSKIKSQAL----------------EFPDQPDIAEDLKDLITRMLDKNPESRIVVPEIKL 292 (298)
T ss_dssp SH--HHHHHHHHHCCC----------------CCCSSSCCCHHHHHHHHHHTCSCTTTSCCHHHHTT
T ss_pred cH--HHHHHHHhcccC----------------CCCCccccCHHHHHHHHHHhhcChhhCCCHHHHhc
Confidence 21 111111111000 00111134456889999999999999999999875
No 92
>3gni_B Strad alpha; kinase fold, pseudokinase, alpha helical repeat protein, ADA protein, ATP-binding, cell cycle, kinase, nucleotide-bindin nucleus; HET: ATP CIT; 2.35A {Homo sapiens} PDB: 2wtk_B*
Probab=100.00 E-value=1.1e-40 Score=357.15 Aligned_cols=271 Identities=17% Similarity=0.231 Sum_probs=206.1
Q ss_pred hccCCcccccccc--ccEEEEEEEec-CCCeEEEEEechhh--HHHHHHHHHHHHHHHhcCCCceeeEeeeeecCCeeEE
Q 005040 426 TDEFNECNLLGTG--GFGSVYKGTLS-DGTNVAIKIFNLQL--ERAFRSFDSECEILRNVRHRNLLKILGSCSNLDFKAL 500 (717)
Q Consensus 426 ~~~~~~~~~lg~G--~~g~V~~~~~~-~~~~vavK~~~~~~--~~~~~~~~~e~~~l~~l~hpniv~~~~~~~~~~~~~l 500 (717)
.++|++.+.||+| +||.||+|+.. +++.||||++.... ....+.+.+|+++++.++||||+++++++.+.+..++
T Consensus 24 ~~~y~~~~~lG~G~~~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~~~~~~~~~~~~~l 103 (389)
T 3gni_B 24 GGCYELLTVIGKGFEDLMTVNLARYKPTGEYVTVRRINLEACSNEMVTFLQGELHVSKLFNHPNIVPYRATFIADNELWV 103 (389)
T ss_dssp GGGEEEEEEEEEETTTTEEEEEEEETTTCCEEEEEEEEGGGSCHHHHHHHHHHHHHHHHCCCTTBCCEEEEEEETTEEEE
T ss_pred CCcEEEEecccCCcCCceEEEEEEEcCCCCEEEEEEecccccChHHHHHHHHHHHHHHhCCCCCCCcEeEEEEECCEEEE
Confidence 3689999999999 99999999976 79999999997654 4455678889999999999999999999999999999
Q ss_pred EEEccCCCCHHHHHhhC-CCCCCHHHHHHHHHHHHHHHHHHhhcCCCCCeEecCCCCCCeeeCCCCcEEEeeeccccccC
Q 005040 501 VLEFMPNGSLEKWLYSH-NYFLDILQRLNIMIDVGSALEYLHHCHSSAPIIHCDLKPTNILLDENMVAHVSDFGISKLLG 579 (717)
Q Consensus 501 v~e~~~~g~L~~~l~~~-~~~~~~~~~~~i~~~i~~~l~~LH~~~~~~~ivH~dlk~~Nill~~~~~~kl~Dfgl~~~~~ 579 (717)
||||+++|+|.+++... ...+++..+..++.|++.||+||| +.+|+||||||+|||++.++.+||+|||.+....
T Consensus 104 v~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~qi~~~l~~LH----~~~ivHrDlkp~NIll~~~~~~kl~dfg~~~~~~ 179 (389)
T 3gni_B 104 VTSFMAYGSAKDLICTHFMDGMNELAIAYILQGVLKALDYIH----HMGYVHRSVKASHILISVDGKVYLSGLRSNLSMI 179 (389)
T ss_dssp EEECCTTCBHHHHHHHTCTTCCCHHHHHHHHHHHHHHHHHHH----HTTEECCCCSGGGEEECTTCCEEECCGGGCEECE
T ss_pred EEEccCCCCHHHHHhhhcccCCCHHHHHHHHHHHHHHHHHHH----hCCeecCCCCHHHEEEcCCCCEEEcccccceeec
Confidence 99999999999999864 345899999999999999999999 6789999999999999999999999999986543
Q ss_pred CCCC-----ceeeeccccCccccCCCccCC--CCcCcccchhhHHHHHHHHHhCCCCCCccccCcchHHHHHHhhCCCc-
Q 005040 580 EGED-----SVIQTMTMATIGYMAPEYGSE--GIVSTKCDVYSYGVLLMETFTEKKPTDEMFTGEMSLRRWVKESLPHR- 651 (717)
Q Consensus 580 ~~~~-----~~~~~~~~~t~~y~aPE~~~~--~~~~~~~Dvws~G~il~el~tg~~p~~~~~~~~~~~~~~~~~~~~~~- 651 (717)
.... ........||+.|+|||++.+ ..++.++||||+||++|||++|+.||.+.......... .....+..
T Consensus 180 ~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~~DiwslG~il~el~~g~~pf~~~~~~~~~~~~-~~~~~~~~~ 258 (389)
T 3gni_B 180 SHGQRQRVVHDFPKYSVKVLPWLSPEVLQQNLQGYDAKSDIYSVGITACELANGHVPFKDMPATQMLLEK-LNGTVPCLL 258 (389)
T ss_dssp ETTEECSCBCCCCTTCTTTGGGSCHHHHSTTSSCBCTHHHHHHHHHHHHHHHHSSCTTTTCCSTTHHHHC----------
T ss_pred cccccccccccccccccccccccCHHHHhccCCCCCcHhHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHH-hcCCCCccc
Confidence 2211 111223468999999998877 67999999999999999999999999764332221111 11100000
Q ss_pred ----------------------hhhhcc----ccchhhhhhhhhhHHHHHHHHHHHhhccCCCCCCCCCHHHHHHH
Q 005040 652 ----------------------LTEVVD----ANLVREEQAFSDKMDCLFSIMDLALDCCMDTPHKRIHMTDAAAK 701 (717)
Q Consensus 652 ----------------------~~~~~~----~~~~~~~~~~~~~~~~~~~l~~li~~cl~~~P~~Rpt~~ev~~~ 701 (717)
..+... ..........+....++.++.+++.+||+.||++|||+.|+++.
T Consensus 259 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~li~~~L~~dP~~Rpta~ell~h 334 (389)
T 3gni_B 259 DTSTIPAEELTMSPSRSVANSGLSDSLTTSTPRPSNGDSPSHPYHRTFSPHFHHFVEQCLQRNPDARPSASTLLNH 334 (389)
T ss_dssp -----------------------------------------------CCHHHHHHHHHHTCSCTTTSCCHHHHTTS
T ss_pred cccccccccccccccccccccccccccccCccccccCCCCCCccccccCHHHHHHHHHHhhcCcccCCCHHHHhcC
Confidence 000000 00000000111223456779999999999999999999999854
No 93
>2w1i_A JAK2; chromosomal rearrangement, nucleotide-binding, tyrosine-protein kinase, proto-oncogene, phosphoprotein, disease mutation, SH2 domain; HET: PTR L0I; 2.60A {Homo sapiens}
Probab=100.00 E-value=2.8e-41 Score=352.80 Aligned_cols=277 Identities=26% Similarity=0.418 Sum_probs=215.7
Q ss_pred hccCCccccccccccEEEEEEEe-----cCCCeEEEEEechhhHHHHHHHHHHHHHHHhcCCCceeeEeeeeecCC--ee
Q 005040 426 TDEFNECNLLGTGGFGSVYKGTL-----SDGTNVAIKIFNLQLERAFRSFDSECEILRNVRHRNLLKILGSCSNLD--FK 498 (717)
Q Consensus 426 ~~~~~~~~~lg~G~~g~V~~~~~-----~~~~~vavK~~~~~~~~~~~~~~~e~~~l~~l~hpniv~~~~~~~~~~--~~ 498 (717)
.++|++.+.||+|+||.||+|.+ .+++.||||++........+.+.+|++++++++||||+++++++...+ ..
T Consensus 40 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~~ 119 (326)
T 2w1i_A 40 ERHLKFLQQLGKGNFGSVEMCRYDPLQDNTGEVVAVKKLQHSTEEHLRDFEREIEILKSLQHDNIVKYKGVCYSAGRRNL 119 (326)
T ss_dssp GGGEEEEEEEECCSSEEEEEEEECTTSSSCCEEEEEEEESSCCSHHHHHHHHHHHHHHTCCCTTBCCEEEEECC----CC
T ss_pred HHHceeeeeeccCCCeEEEEEEeccccCCCceEEEEEEeccCCHHHHHHHHHHHHHHHhCCCCCeeeEEEEEEecCCCce
Confidence 36789999999999999999984 368899999998766666678999999999999999999999886543 78
Q ss_pred EEEEEccCCCCHHHHHhhCCCCCCHHHHHHHHHHHHHHHHHHhhcCCCCCeEecCCCCCCeeeCCCCcEEEeeecccccc
Q 005040 499 ALVLEFMPNGSLEKWLYSHNYFLDILQRLNIMIDVGSALEYLHHCHSSAPIIHCDLKPTNILLDENMVAHVSDFGISKLL 578 (717)
Q Consensus 499 ~lv~e~~~~g~L~~~l~~~~~~~~~~~~~~i~~~i~~~l~~LH~~~~~~~ivH~dlk~~Nill~~~~~~kl~Dfgl~~~~ 578 (717)
++||||+++++|.+++......+++..+..++.|+++||.||| +.+|+||||||+||+++.++.+||+|||++...
T Consensus 120 ~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~i~~qi~~aL~~LH----~~~ivH~dikp~NIli~~~~~~kL~Dfg~~~~~ 195 (326)
T 2w1i_A 120 KLIMEYLPYGSLRDYLQKHKERIDHIKLLQYTSQICKGMEYLG----TKRYIHRDLATRNILVENENRVKIGDFGLTKVL 195 (326)
T ss_dssp EEEECCCTTCBHHHHHHHSTTSSCHHHHHHHHHHHHHHHHHHH----HTTEECSCCCGGGEEEEETTEEEECCCTTCEEC
T ss_pred EEEEECCCCCCHHHHHHhcccCCCHHHHHHHHHHHHHHHHHHH----hCCEeccCCCcceEEEcCCCcEEEecCcchhhc
Confidence 9999999999999999987777999999999999999999999 678999999999999999999999999999887
Q ss_pred CCCCCce-eeeccccCccccCCCccCCCCcCcccchhhHHHHHHHHHhCCCCCCccccCcchHHHHHHhhCCCch-hhhc
Q 005040 579 GEGEDSV-IQTMTMATIGYMAPEYGSEGIVSTKCDVYSYGVLLMETFTEKKPTDEMFTGEMSLRRWVKESLPHRL-TEVV 656 (717)
Q Consensus 579 ~~~~~~~-~~~~~~~t~~y~aPE~~~~~~~~~~~Dvws~G~il~el~tg~~p~~~~~~~~~~~~~~~~~~~~~~~-~~~~ 656 (717)
....... ......++..|+|||.+.+..++.++||||||+++|||++|..|+..... ...+.......... ...+
T Consensus 196 ~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~el~tg~~~~~~~~~---~~~~~~~~~~~~~~~~~~~ 272 (326)
T 2w1i_A 196 PQDKEYYKVKEPGESPIFWYAPESLTESKFSVASDVWSFGVVLYELFTYIEKSKSPPA---EFMRMIGNDKQGQMIVFHL 272 (326)
T ss_dssp CSSCSEEECSSCCSCCGGGCCHHHHHHCEEEHHHHHHHHHHHHHHHHHTTCGGGSHHH---HHHHHHCTTCCTHHHHHHH
T ss_pred cccccccccccCCCCceeEECchhhcCCCCCchhhHHHHHHHHHHHHhcCCCCCCCHH---HHHHhhccccchhhhHHHH
Confidence 5443221 12234567889999999888899999999999999999999999754210 01111100000000 0000
Q ss_pred cccchhhhhhhhhhHHHHHHHHHHHhhccCCCCCCCCCHHHHHHHHHHhHHhhc
Q 005040 657 DANLVREEQAFSDKMDCLFSIMDLALDCCMDTPHKRIHMTDAAAKLRKIKAKFL 710 (717)
Q Consensus 657 ~~~~~~~~~~~~~~~~~~~~l~~li~~cl~~~P~~Rpt~~ev~~~L~~~~~~~~ 710 (717)
...+. .....+....++.++.+++.+||+.||++|||+.|+++.|+++++++.
T Consensus 273 ~~~~~-~~~~~~~~~~~~~~l~~li~~cl~~dP~~Rps~~el~~~L~~l~~~l~ 325 (326)
T 2w1i_A 273 IELLK-NNGRLPRPDGCPDEIYMIMTECWNNNVNQRPSFRDLALRVDQIRDQMA 325 (326)
T ss_dssp HHHHH-TTCCCCCCTTCCHHHHHHHHHHSCSSGGGSCCHHHHHHHHHHHHHHHH
T ss_pred HHHhh-cCCCCCCCCcccHHHHHHHHHHcCCChhhCcCHHHHHHHHHHHHHHhc
Confidence 00000 000011123456778999999999999999999999999999988753
No 94
>2x4f_A Myosin light chain kinase family member 4; LUNG, breast cancer, transferase, serine/threonine-protein kinase, nucleotide-binding; HET: 16X 1PE; 2.67A {Homo sapiens}
Probab=100.00 E-value=6.5e-41 Score=355.47 Aligned_cols=248 Identities=22% Similarity=0.319 Sum_probs=199.9
Q ss_pred CccccccccccEEEEEEEec-CCCeEEEEEechhhHHHHHHHHHHHHHHHhcCCCceeeEeeeeecCCeeEEEEEccCCC
Q 005040 430 NECNLLGTGGFGSVYKGTLS-DGTNVAIKIFNLQLERAFRSFDSECEILRNVRHRNLLKILGSCSNLDFKALVLEFMPNG 508 (717)
Q Consensus 430 ~~~~~lg~G~~g~V~~~~~~-~~~~vavK~~~~~~~~~~~~~~~e~~~l~~l~hpniv~~~~~~~~~~~~~lv~e~~~~g 508 (717)
...+.||+|+||.||+|... +|+.||+|++........+.+.+|++++++++||||+++++++.+.+..++||||+++|
T Consensus 92 ~~~~~lG~G~~g~Vy~a~~~~~g~~vavK~~~~~~~~~~~~~~~E~~~l~~l~hpnIv~~~~~~~~~~~~~lv~E~~~~~ 171 (373)
T 2x4f_A 92 SKTEILGGGRFGQVHKCEETATGLKLAAKIIKTRGMKDKEEVKNEISVMNQLDHANLIQLYDAFESKNDIVLVMEYVDGG 171 (373)
T ss_dssp EEEEECC-----CEEEEEETTTCCEEEEEEEECCSHHHHHHHHHHHHHHTTCCCTTBCCEEEEEECSSEEEEEEECCTTC
T ss_pred ecceEEecCcCEEEEEEEEcCCCcEEEEEEEcccccccHHHHHHHHHHHHhCCCCCCCeEEEEEEECCEEEEEEeCCCCC
Confidence 33567999999999999875 79999999998665555678899999999999999999999999999999999999999
Q ss_pred CHHHHHhhCCCCCCHHHHHHHHHHHHHHHHHHhhcCCCCCeEecCCCCCCeee--CCCCcEEEeeeccccccCCCCCcee
Q 005040 509 SLEKWLYSHNYFLDILQRLNIMIDVGSALEYLHHCHSSAPIIHCDLKPTNILL--DENMVAHVSDFGISKLLGEGEDSVI 586 (717)
Q Consensus 509 ~L~~~l~~~~~~~~~~~~~~i~~~i~~~l~~LH~~~~~~~ivH~dlk~~Nill--~~~~~~kl~Dfgl~~~~~~~~~~~~ 586 (717)
+|.+++......+++..+..++.|+++||.||| +.+|+||||||+||++ +.++.+||+|||+++.+.....
T Consensus 172 ~L~~~l~~~~~~l~~~~~~~i~~qi~~aL~~LH----~~~ivH~Dlkp~NIll~~~~~~~~kl~DFG~a~~~~~~~~--- 244 (373)
T 2x4f_A 172 ELFDRIIDESYNLTELDTILFMKQICEGIRHMH----QMYILHLDLKPENILCVNRDAKQIKIIDFGLARRYKPREK--- 244 (373)
T ss_dssp EEHHHHHHTGGGCCHHHHHHHHHHHHHHHHHHH----HTTEECCCCCGGGEEEEETTTTEEEECCCSSCEECCTTCB---
T ss_pred cHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHH----HCCcccccCCHHHEEEecCCCCcEEEEeCCCceecCCccc---
Confidence 999999877667999999999999999999999 6789999999999999 6778999999999987754332
Q ss_pred eeccccCccccCCCccCCCCcCcccchhhHHHHHHHHHhCCCCCCccccCcchHHHHHHhhCCCchhhhccccchhhhhh
Q 005040 587 QTMTMATIGYMAPEYGSEGIVSTKCDVYSYGVLLMETFTEKKPTDEMFTGEMSLRRWVKESLPHRLTEVVDANLVREEQA 666 (717)
Q Consensus 587 ~~~~~~t~~y~aPE~~~~~~~~~~~Dvws~G~il~el~tg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 666 (717)
.....||+.|+|||++.+..++.++|||||||++|||++|+.||...... ..+........... .
T Consensus 245 ~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~elltg~~pf~~~~~~-~~~~~i~~~~~~~~-----~--------- 309 (373)
T 2x4f_A 245 LKVNFGTPEFLAPEVVNYDFVSFPTDMWSVGVIAYMLLSGLSPFLGDNDA-ETLNNILACRWDLE-----D--------- 309 (373)
T ss_dssp CCCCCSSCTTCCHHHHTTCBCCHHHHHHHHHHHHHHHHHSSCTTCCSSHH-HHHHHHHHTCCCSC-----S---------
T ss_pred cccccCCCcEeChhhccCCCCCcHHhHHHHHHHHHHHHhCCCCCCCCCHH-HHHHHHHhccCCCC-----h---------
Confidence 23346899999999999999999999999999999999999999763221 11111111111000 0
Q ss_pred hhhhHHHHHHHHHHHhhccCCCCCCCCCHHHHHH
Q 005040 667 FSDKMDCLFSIMDLALDCCMDTPHKRIHMTDAAA 700 (717)
Q Consensus 667 ~~~~~~~~~~l~~li~~cl~~~P~~Rpt~~ev~~ 700 (717)
.....++.++.+++.+||+.||++|||+.|+++
T Consensus 310 -~~~~~~~~~~~~li~~~L~~dp~~Rps~~e~l~ 342 (373)
T 2x4f_A 310 -EEFQDISEEAKEFISKLLIKEKSWRISASEALK 342 (373)
T ss_dssp -GGGTTSCHHHHHHHHTTSCSSGGGSCCHHHHHH
T ss_pred -hhhccCCHHHHHHHHHHcCCChhhCCCHHHHhc
Confidence 011234567889999999999999999999987
No 95
>1xjd_A Protein kinase C, theta type; PKC-theta, ATP, AMP,, transferase; HET: TPO SEP STU; 2.00A {Homo sapiens} SCOP: d.144.1.7 PDB: 2jed_A*
Probab=100.00 E-value=2.7e-41 Score=353.71 Aligned_cols=250 Identities=23% Similarity=0.292 Sum_probs=203.7
Q ss_pred HHHhccCCccccccccccEEEEEEEec-CCCeEEEEEechhh---HHHHHHHHHHHHHHHhc-CCCceeeEeeeeecCCe
Q 005040 423 RRATDEFNECNLLGTGGFGSVYKGTLS-DGTNVAIKIFNLQL---ERAFRSFDSECEILRNV-RHRNLLKILGSCSNLDF 497 (717)
Q Consensus 423 ~~~~~~~~~~~~lg~G~~g~V~~~~~~-~~~~vavK~~~~~~---~~~~~~~~~e~~~l~~l-~hpniv~~~~~~~~~~~ 497 (717)
....++|++.+.||+|+||.||+|+.+ +++.||+|+++... ....+.+..|.++++.+ +||||+++++++.+.+.
T Consensus 13 ~~~~~~y~~~~~lG~G~fg~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~~E~~il~~~~~hp~iv~l~~~~~~~~~ 92 (345)
T 1xjd_A 13 KLKIEDFILHKMLGKGSFGKVFLAEFKKTNQFFAIKALKKDVVLMDDDVECTMVEKRVLSLAWEHPFLTHMFCTFQTKEN 92 (345)
T ss_dssp ---CTTEEEEEEEEECSSSEEEEEEETTTTEEEEEEEEEHHHHHHTTCHHHHHHHHHHHHHHTTCTTBCCEEEEEECSSE
T ss_pred CCChHHeEEEEEEeeCCCeEEEEEEECCCCCEEEEEEEEhHHhhhhhhHHHHHHHHHHHHhcCCCCCCCcEEEEEEeCCE
Confidence 445689999999999999999999976 78999999998653 23445678899999987 89999999999999999
Q ss_pred eEEEEEccCCCCHHHHHhhCCCCCCHHHHHHHHHHHHHHHHHHhhcCCCCCeEecCCCCCCeeeCCCCcEEEeeeccccc
Q 005040 498 KALVLEFMPNGSLEKWLYSHNYFLDILQRLNIMIDVGSALEYLHHCHSSAPIIHCDLKPTNILLDENMVAHVSDFGISKL 577 (717)
Q Consensus 498 ~~lv~e~~~~g~L~~~l~~~~~~~~~~~~~~i~~~i~~~l~~LH~~~~~~~ivH~dlk~~Nill~~~~~~kl~Dfgl~~~ 577 (717)
.|+||||+++|+|.+++.... .+++..+..++.|++.||.||| +.+|+||||||+||+++.++++||+|||+++.
T Consensus 93 ~~lv~E~~~gg~L~~~l~~~~-~~~~~~~~~~~~qi~~aL~~LH----~~~ivHrDlkp~NIll~~~g~vkL~DFG~a~~ 167 (345)
T 1xjd_A 93 LFFVMEYLNGGDLMYHIQSCH-KFDLSRATFYAAEIILGLQFLH----SKGIVYRDLKLDNILLDKDGHIKIADFGMCKE 167 (345)
T ss_dssp EEEEEECCTTCBHHHHHHHHS-SCCHHHHHHHHHHHHHHHHHHH----HTTCBCCCCCGGGEEECTTSCEEECCCTTCBC
T ss_pred EEEEEeCCCCCcHHHHHHHcC-CCCHHHHHHHHHHHHHHHHHHH----HCCeEeCCCChhhEEECCCCCEEEeEChhhhh
Confidence 999999999999999998654 3899999999999999999999 67899999999999999999999999999986
Q ss_pred cCCCCCceeeeccccCccccCCCccCCCCcCcccchhhHHHHHHHHHhCCCCCCccccCcchHHHHHHhhCCCchhhhcc
Q 005040 578 LGEGEDSVIQTMTMATIGYMAPEYGSEGIVSTKCDVYSYGVLLMETFTEKKPTDEMFTGEMSLRRWVKESLPHRLTEVVD 657 (717)
Q Consensus 578 ~~~~~~~~~~~~~~~t~~y~aPE~~~~~~~~~~~Dvws~G~il~el~tg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 657 (717)
...... .....+||+.|+|||++.+..++.++||||+||++|||++|+.||.+... ......+....
T Consensus 168 ~~~~~~--~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~ell~g~~Pf~~~~~--~~~~~~i~~~~--------- 234 (345)
T 1xjd_A 168 NMLGDA--KTNTFCGTPDYIAPEILLGQKYNHSVDWWSFGVLLYEMLIGQSPFHGQDE--EELFHSIRMDN--------- 234 (345)
T ss_dssp CCCTTC--CBCCCCSCGGGCCHHHHTTCCBCTHHHHHHHHHHHHHHHHSSCSSCCSSH--HHHHHHHHHCC---------
T ss_pred cccCCC--cccCCCCCcccCChhhhcCCCCCChhhhHHHHHHHHHHhcCCCCCCCCCH--HHHHHHHHhCC---------
Confidence 432221 22445799999999999999999999999999999999999999975321 11111111110
Q ss_pred ccchhhhhhhhhhHHHHHHHHHHHhhccCCCCCCCCCHH-HHH
Q 005040 658 ANLVREEQAFSDKMDCLFSIMDLALDCCMDTPHKRIHMT-DAA 699 (717)
Q Consensus 658 ~~~~~~~~~~~~~~~~~~~l~~li~~cl~~~P~~Rpt~~-ev~ 699 (717)
..+ +..++.++.+++.+||..||++||++. |++
T Consensus 235 ~~~---------p~~~s~~~~~li~~lL~~dp~~R~~~~~~i~ 268 (345)
T 1xjd_A 235 PFY---------PRWLEKEAKDLLVKLFVREPEKRLGVRGDIR 268 (345)
T ss_dssp CCC---------CTTSCHHHHHHHHHHSCSSGGGSBTTBSCGG
T ss_pred CCC---------CcccCHHHHHHHHHHhcCCHhHcCCChHHHH
Confidence 000 012345688999999999999999997 554
No 96
>1b6c_B TGF-B superfamily receptor type I; complex (isomerase/protein kinase), receptor serine/threonine kinase; 2.60A {Homo sapiens} SCOP: d.144.1.7 PDB: 1ias_A 2x7o_A* 3faa_A* 3kcf_A*
Probab=100.00 E-value=5.4e-40 Score=345.77 Aligned_cols=280 Identities=23% Similarity=0.352 Sum_probs=220.4
Q ss_pred CCCHHHHHHHhccCCccccccccccEEEEEEEecCCCeEEEEEechhhHHHHHHHHHHHHHHHh--cCCCceeeEeeeee
Q 005040 416 RTSYLDIRRATDEFNECNLLGTGGFGSVYKGTLSDGTNVAIKIFNLQLERAFRSFDSECEILRN--VRHRNLLKILGSCS 493 (717)
Q Consensus 416 ~~~~~~~~~~~~~~~~~~~lg~G~~g~V~~~~~~~~~~vavK~~~~~~~~~~~~~~~e~~~l~~--l~hpniv~~~~~~~ 493 (717)
......-+...++|++.+.||+|+||.||+|+. +++.||||++.... .+.+.+|.++++. ++||||+++++++.
T Consensus 31 ~~~~~~~~~~~~~y~~~~~lg~G~~g~Vy~~~~-~~~~vavK~~~~~~---~~~~~~e~~~~~~~~l~h~ni~~~~~~~~ 106 (342)
T 1b6c_B 31 GLPLLVQRTIARTIVLQESIGKGRFGEVWRGKW-RGEEVAVKIFSSRE---ERSWFREAEIYQTVMLRHENILGFIAADN 106 (342)
T ss_dssp SSCHHHHHHHHHHCEEEEEEEEETTEEEEEEEE-TTEEEEEEEECGGG---HHHHHHHHHHHHHSCCCCTTBCCEEEEEE
T ss_pred CCceeecccccccEEEEeeecCCCCcEEEEEEE-cCccEEEEEeCchh---HHHHHHHHHHHHHhhcCCCcEEEEEeeec
Confidence 344555566778999999999999999999998 58999999997543 3456778888887 68999999999998
Q ss_pred cCC----eeEEEEEccCCCCHHHHHhhCCCCCCHHHHHHHHHHHHHHHHHHhhc----CCCCCeEecCCCCCCeeeCCCC
Q 005040 494 NLD----FKALVLEFMPNGSLEKWLYSHNYFLDILQRLNIMIDVGSALEYLHHC----HSSAPIIHCDLKPTNILLDENM 565 (717)
Q Consensus 494 ~~~----~~~lv~e~~~~g~L~~~l~~~~~~~~~~~~~~i~~~i~~~l~~LH~~----~~~~~ivH~dlk~~Nill~~~~ 565 (717)
... ..++||||+++|+|.+++.... +++..++.++.|++.||.|||.. +.+.+|+||||||+||+++.++
T Consensus 107 ~~~~~~~~~~lv~e~~~~g~L~~~l~~~~--~~~~~~~~i~~~i~~~l~~lH~~~~~~~~~~~ivH~Dlkp~NIll~~~~ 184 (342)
T 1b6c_B 107 KDNGTWTQLWLVSDYHEHGSLFDYLNRYT--VTVEGMIKLALSTASGLAHLHMEIVGTQGKPAIAHRDLKSKNILVKKNG 184 (342)
T ss_dssp CCCSSCCCEEEEECCCTTCBHHHHHHHCC--BCHHHHHHHHHHHHHHHHHHHCCBCSTTCBCEEECSCCSGGGEEECTTS
T ss_pred ccCCccceeEEEEeecCCCcHHHHHhccC--ccHHHHHHHHHHHHHHHHHHHHHHhhhcccCCeeeCCCCHHHEEECCCC
Confidence 765 7899999999999999998754 89999999999999999999931 0036899999999999999999
Q ss_pred cEEEeeeccccccCCCCCce--eeeccccCccccCCCccCCC------CcCcccchhhHHHHHHHHHhC----------C
Q 005040 566 VAHVSDFGISKLLGEGEDSV--IQTMTMATIGYMAPEYGSEG------IVSTKCDVYSYGVLLMETFTE----------K 627 (717)
Q Consensus 566 ~~kl~Dfgl~~~~~~~~~~~--~~~~~~~t~~y~aPE~~~~~------~~~~~~Dvws~G~il~el~tg----------~ 627 (717)
.+||+|||++.......... ......||+.|+|||++.+. .++.++||||||+++|||++| +
T Consensus 185 ~~kL~Dfg~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~~~~~~Di~slG~il~el~tg~~~~~~~~~~~ 264 (342)
T 1b6c_B 185 TCCIADLGLAVRHDSATDTIDIAPNHRVGTKRYMAPEVLDDSINMKHFESFKRADIYAMGLVFWEIARRCSIGGIHEDYQ 264 (342)
T ss_dssp CEEECCCTTCEEEETTTTEEEECCCSCCCCGGGCCHHHHTSCCCTTCHHHHHHHHHHHHHHHHHHHHTTBCBTTBCCCCC
T ss_pred CEEEEECCCceeccccccccccccccCCcCcccCCHhhhcccccccccccCCcccHHHHHHHHHHHHhccCcCCcccccc
Confidence 99999999998765443221 22345689999999987765 344789999999999999999 7
Q ss_pred CCCCccccCcchHHHHHHhhCCCchhhhccccchhhhhhhhhhHHHHHHHHHHHhhccCCCCCCCCCHHHHHHHHHHhHH
Q 005040 628 KPTDEMFTGEMSLRRWVKESLPHRLTEVVDANLVREEQAFSDKMDCLFSIMDLALDCCMDTPHKRIHMTDAAAKLRKIKA 707 (717)
Q Consensus 628 ~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~cl~~~P~~Rpt~~ev~~~L~~~~~ 707 (717)
.||............+......... .+.+. ......+++..+.+++.+||+.||++|||+.|+++.|+++.+
T Consensus 265 ~p~~~~~~~~~~~~~~~~~~~~~~~----~~~~~----~~~~~~~~~~~l~~li~~cl~~dp~~Rps~~~i~~~L~~i~~ 336 (342)
T 1b6c_B 265 LPYYDLVPSDPSVEEMRKVVCEQKL----RPNIP----NRWQSCEALRVMAKIMRECWYANGAARLTALRIKKTLSQLSQ 336 (342)
T ss_dssp CTTTTTSCSSCCHHHHHHHHTTSCC----CCCCC----GGGGTSHHHHHHHHHHHHHCCSSGGGSCCHHHHHHHHHHHHH
T ss_pred cCccccCcCcccHHHHHHHHHHHHh----CCCCc----ccccchhHHHHHHHHHHHHhccChhhCCCHHHHHHHHHHHHH
Confidence 7887654444444444333221111 11111 111223566789999999999999999999999999999987
Q ss_pred hh
Q 005040 708 KF 709 (717)
Q Consensus 708 ~~ 709 (717)
+.
T Consensus 337 ~~ 338 (342)
T 1b6c_B 337 QE 338 (342)
T ss_dssp TT
T ss_pred Hh
Confidence 64
No 97
>3kmu_A ILK, integrin-linked kinase; cell adhesion, ANK repeat, ATP-binding, cell junction, cell membrane, integrin-binding protein, membrane, nucleotide- binding; 1.80A {Homo sapiens} SCOP: d.144.1.0 PDB: 3kmw_A* 3rep_A*
Probab=100.00 E-value=4.7e-41 Score=341.49 Aligned_cols=252 Identities=25% Similarity=0.373 Sum_probs=205.4
Q ss_pred hccCCccccccccccEEEEEEEecCCCeEEEEEechhh--HHHHHHHHHHHHHHHhcCCCceeeEeeeeecC--CeeEEE
Q 005040 426 TDEFNECNLLGTGGFGSVYKGTLSDGTNVAIKIFNLQL--ERAFRSFDSECEILRNVRHRNLLKILGSCSNL--DFKALV 501 (717)
Q Consensus 426 ~~~~~~~~~lg~G~~g~V~~~~~~~~~~vavK~~~~~~--~~~~~~~~~e~~~l~~l~hpniv~~~~~~~~~--~~~~lv 501 (717)
.++|++.+.||+|+||.||+|+++ ++.||||++.... ....+.+.+|++++++++||||+++++++.+. ...++|
T Consensus 9 ~~~y~~~~~lg~G~~g~V~~~~~~-~~~~avK~~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~~~lv 87 (271)
T 3kmu_A 9 FKQLNFLTKLNENHSGELWKGRWQ-GNDIVVKVLKVRDWSTRKSRDFNEECPRLRIFSHPNVLPVLGACQSPPAPHPTLI 87 (271)
T ss_dssp GGGCEEEEEEEEETTEEEEEEEET-TEEEEEEEECCTTCCHHHHHHHHHHGGGGCCCSCTTEECEEEEECTTTSSSCEEE
T ss_pred HHHhHHHHHhcCCCcceEEEEEEC-CeeEEEEEecccccCHHHHHHHHHHHHHHHhcCCCchhheEEEEccCCCCCeEee
Confidence 368999999999999999999984 8899999997543 34456789999999999999999999999877 788999
Q ss_pred EEccCCCCHHHHHhhCCC-CCCHHHHHHHHHHHHHHHHHHhhcCCCCC--eEecCCCCCCeeeCCCCcEEEeeecccccc
Q 005040 502 LEFMPNGSLEKWLYSHNY-FLDILQRLNIMIDVGSALEYLHHCHSSAP--IIHCDLKPTNILLDENMVAHVSDFGISKLL 578 (717)
Q Consensus 502 ~e~~~~g~L~~~l~~~~~-~~~~~~~~~i~~~i~~~l~~LH~~~~~~~--ivH~dlk~~Nill~~~~~~kl~Dfgl~~~~ 578 (717)
|||+++|+|.+++..... .+++..+..++.|++.||+||| +.+ |+||||||+||+++.++.++++|||++...
T Consensus 88 ~e~~~~~~L~~~l~~~~~~~~~~~~~~~i~~qi~~~l~~lH----~~~~~i~H~dikp~Nil~~~~~~~~l~~~~~~~~~ 163 (271)
T 3kmu_A 88 THWMPYGSLYNVLHEGTNFVVDQSQAVKFALDMARGMAFLH----TLEPLIPRHALNSRSVMIDEDMTARISMADVKFSF 163 (271)
T ss_dssp EECCTTCBHHHHHHSCSSCCCCHHHHHHHHHHHHHHHHHHT----TSSSCCTTCCCSGGGEEECTTSCEEEEGGGSCCTT
T ss_pred ecccCCCcHHHHHhhcccCCCCHHHHHHHHHHHHHHHHHHh----cCCCceecCCCccceEEEcCCcceeEEeccceeee
Confidence 999999999999987543 5899999999999999999999 567 999999999999999999999999987643
Q ss_pred CCCCCceeeeccccCccccCCCccCCCCcCc---ccchhhHHHHHHHHHhCCCCCCccccCcchHHHHHHhhCCCchhhh
Q 005040 579 GEGEDSVIQTMTMATIGYMAPEYGSEGIVST---KCDVYSYGVLLMETFTEKKPTDEMFTGEMSLRRWVKESLPHRLTEV 655 (717)
Q Consensus 579 ~~~~~~~~~~~~~~t~~y~aPE~~~~~~~~~---~~Dvws~G~il~el~tg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~ 655 (717)
.. ....+|+.|+|||.+.+..++. ++||||||+++|||++|+.||........ ............
T Consensus 164 ~~-------~~~~~t~~y~aPE~~~~~~~~~~~~~~Di~slG~il~el~~g~~p~~~~~~~~~-~~~~~~~~~~~~---- 231 (271)
T 3kmu_A 164 QS-------PGRMYAPAWVAPEALQKKPEDTNRRSADMWSFAVLLWELVTREVPFADLSNMEI-GMKVALEGLRPT---- 231 (271)
T ss_dssp SC-------TTCBSCGGGSCHHHHHSCGGGSCHHHHHHHHHHHHHHHHHHCSCTTTTSCHHHH-HHHHHHSCCCCC----
T ss_pred cc-------cCccCCccccChhhhccCCCCCCCchhhHHHHHHHHHHHHhCCCCccccChHHH-HHHHHhcCCCCC----
Confidence 22 2335799999999887765544 79999999999999999999976322111 111111100000
Q ss_pred ccccchhhhhhhhhhHHHHHHHHHHHhhccCCCCCCCCCHHHHHHHHHHhHH
Q 005040 656 VDANLVREEQAFSDKMDCLFSIMDLALDCCMDTPHKRIHMTDAAAKLRKIKA 707 (717)
Q Consensus 656 ~~~~~~~~~~~~~~~~~~~~~l~~li~~cl~~~P~~Rpt~~ev~~~L~~~~~ 707 (717)
.+..++.++.+++.+||+.||++|||++|+++.|+++.+
T Consensus 232 -------------~~~~~~~~~~~li~~~l~~~p~~Rps~~~il~~L~~l~~ 270 (271)
T 3kmu_A 232 -------------IPPGISPHVSKLMKICMNEDPAKRPKFDMIVPILEKMQD 270 (271)
T ss_dssp -------------CCTTCCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHCC
T ss_pred -------------CCCCCCHHHHHHHHHHcCCChhhCcCHHHHHHHHHHhhc
Confidence 011344568899999999999999999999999998854
No 98
>3lxl_A Tyrosine-protein kinase JAK3; TYK2, inflammation, cancer, PAN inhibitor, ATP-binding mutation, membrane, nucleotide-binding, phosphoprot SCID; HET: IZA; 1.74A {Homo sapiens} PDB: 3lxk_A* 4hvd_A* 4hvg_A* 4hvh_A* 4hvi_A* 3pjc_A* 1yvj_A*
Probab=100.00 E-value=1.7e-41 Score=354.77 Aligned_cols=276 Identities=27% Similarity=0.354 Sum_probs=213.5
Q ss_pred ccCCccccccccccEEEEEEEe-----cCCCeEEEEEechhhHHHHHHHHHHHHHHHhcCCCceeeEeeeee--cCCeeE
Q 005040 427 DEFNECNLLGTGGFGSVYKGTL-----SDGTNVAIKIFNLQLERAFRSFDSECEILRNVRHRNLLKILGSCS--NLDFKA 499 (717)
Q Consensus 427 ~~~~~~~~lg~G~~g~V~~~~~-----~~~~~vavK~~~~~~~~~~~~~~~e~~~l~~l~hpniv~~~~~~~--~~~~~~ 499 (717)
++|++.+.||+|+||.||+|++ .+++.||||++........+.+.+|++++++++||||+++++++. +....+
T Consensus 23 ~~y~~~~~lg~G~~g~V~~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~~~~~~~~ 102 (327)
T 3lxl_A 23 RHLKYISQLGKGNFGSVELCRYDPLGDNTGALVAVKQLQHSGPDQQRDFQREIQILKALHSDFIVKYRGVSYGPGRQSLR 102 (327)
T ss_dssp GGEEEEEEEEEETTEEEEEEEECTTSSSCSEEEEEEEESSCCHHHHHHHHHHHHHHHTCCCTTBCCEEEEEECSSSCEEE
T ss_pred hhhhhhhhccCCCCeEEEEEEeccCCCCcceEEEEEEeccCCHHHHHHHHHHHHHHHhcCCCceeEEEEEEecCCCceEE
Confidence 6899999999999999999984 368899999998766666678999999999999999999999875 456789
Q ss_pred EEEEccCCCCHHHHHhhCCCCCCHHHHHHHHHHHHHHHHHHhhcCCCCCeEecCCCCCCeeeCCCCcEEEeeeccccccC
Q 005040 500 LVLEFMPNGSLEKWLYSHNYFLDILQRLNIMIDVGSALEYLHHCHSSAPIIHCDLKPTNILLDENMVAHVSDFGISKLLG 579 (717)
Q Consensus 500 lv~e~~~~g~L~~~l~~~~~~~~~~~~~~i~~~i~~~l~~LH~~~~~~~ivH~dlk~~Nill~~~~~~kl~Dfgl~~~~~ 579 (717)
+||||+++++|.+++......+++..+..++.|++.||+||| +.+|+||||||+||+++.++.+||+|||++....
T Consensus 103 lv~e~~~~~~L~~~l~~~~~~~~~~~~~~i~~qi~~al~~lH----~~~ivH~Dikp~NIl~~~~~~~kl~Dfg~~~~~~ 178 (327)
T 3lxl_A 103 LVMEYLPSGCLRDFLQRHRARLDASRLLLYSSQICKGMEYLG----SRRCVHRDLAARNILVESEAHVKIADFGLAKLLP 178 (327)
T ss_dssp EEEECCTTCBHHHHHHHHGGGCCHHHHHHHHHHHHHHHHHHH----HTTEECSCCSGGGEEEEETTEEEECCGGGCEECC
T ss_pred EEEeecCCCCHHHHHHhcccCCCHHHHHHHHHHHHHHHHHHH----hCCccCCCCChhhEEECCCCCEEEcccccceecc
Confidence 999999999999999876556999999999999999999999 6789999999999999999999999999998775
Q ss_pred CCCCce-eeeccccCccccCCCccCCCCcCcccchhhHHHHHHHHHhCCCCCCccccCcchHHHHHHhhCCCchhhhccc
Q 005040 580 EGEDSV-IQTMTMATIGYMAPEYGSEGIVSTKCDVYSYGVLLMETFTEKKPTDEMFTGEMSLRRWVKESLPHRLTEVVDA 658 (717)
Q Consensus 580 ~~~~~~-~~~~~~~t~~y~aPE~~~~~~~~~~~Dvws~G~il~el~tg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 658 (717)
...... ......+|+.|+|||++.+..++.++||||+|+++|||++|+.||....... ...+.............+.
T Consensus 179 ~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~ll~g~~p~~~~~~~~--~~~~~~~~~~~~~~~~~~~ 256 (327)
T 3lxl_A 179 LDKDYYVVREPGQSPIFWYAPESLSDNIFSRQSDVWSFGVVLYELFTYCDKSCSPSAEF--LRMMGCERDVPALSRLLEL 256 (327)
T ss_dssp TTCSEEECSSCCCSCGGGSCHHHHHHCEEEHHHHHHHHHHHHHHHHTTTCGGGSHHHHH--HHHCC----CCHHHHHHHH
T ss_pred cCCccceeeccCCccccccCHHHhccCCCChHHhHHHHHHHHHHHHhCCCCCccccchh--hhhcccccccccHHHHHHH
Confidence 443322 2233457888999999988889999999999999999999999986421110 0000000000001111100
Q ss_pred cchhhhhhhhhhHHHHHHHHHHHhhccCCCCCCCCCHHHHHHHHHHhHHhhc
Q 005040 659 NLVREEQAFSDKMDCLFSIMDLALDCCMDTPHKRIHMTDAAAKLRKIKAKFL 710 (717)
Q Consensus 659 ~~~~~~~~~~~~~~~~~~l~~li~~cl~~~P~~Rpt~~ev~~~L~~~~~~~~ 710 (717)
.. ..........++.++.+++.+||+.||++|||+.|+++.|+++.....
T Consensus 257 ~~--~~~~~~~~~~~~~~l~~li~~~l~~dP~~Rps~~ell~~L~~~~~~~~ 306 (327)
T 3lxl_A 257 LE--EGQRLPAPPACPAEVHELMKLCWAPSPQDRPSFSALGPQLDMLWSGSR 306 (327)
T ss_dssp HH--TTCCCCCCTTCCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHC-----
T ss_pred hh--cccCCCCCCcccHHHHHHHHHHcCCChhhCcCHHHHHHHHHHHHhhhc
Confidence 00 000111223456778999999999999999999999999999866544
No 99
>3dbq_A Dual specificity protein kinase TTK; MPS1 structure, kinase activation, phosphorylation, ATP- binding, nucleotide-binding, phosphoprotein; 2.70A {Homo sapiens}
Probab=100.00 E-value=6.3e-41 Score=352.53 Aligned_cols=252 Identities=23% Similarity=0.352 Sum_probs=196.4
Q ss_pred hccCCccccccccccEEEEEEEecCCCeEEEEEechhh--HHHHHHHHHHHHHHHhcCC--CceeeEeeeeecCCeeEEE
Q 005040 426 TDEFNECNLLGTGGFGSVYKGTLSDGTNVAIKIFNLQL--ERAFRSFDSECEILRNVRH--RNLLKILGSCSNLDFKALV 501 (717)
Q Consensus 426 ~~~~~~~~~lg~G~~g~V~~~~~~~~~~vavK~~~~~~--~~~~~~~~~e~~~l~~l~h--pniv~~~~~~~~~~~~~lv 501 (717)
.++|++.+.||+|+||.||+|...+++.||||++.... ....+.+.+|++++++++| |||+++++++.+....++|
T Consensus 8 ~~~y~i~~~lG~G~~g~Vy~~~~~~~~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~~~~~~iv~~~~~~~~~~~~~lv 87 (343)
T 3dbq_A 8 GRIYSILKQIGSGGSSKVFQVLNEKKQIYAIKYVNLEEADNQTLDSYRNEIAYLNKLQQHSDKIIRLYDYEITDQYIYMV 87 (343)
T ss_dssp SCEEEEEEEESCCSSEEEEEEECTTSCEEEEEEEECTTCCHHHHHHHHHHHHHHHHHTTTCTTBCCEEEEEECSSEEEEE
T ss_pred cCEEEEEEEEecCCCeEEEEEEeCCCCEEEEEEeeccccchHHHHHHHHHHHHHHhhhhcCCceEEEeeeEeeCCEEEEE
Confidence 36799999999999999999998889999999986443 4445778899999999976 9999999999999999999
Q ss_pred EEccCCCCHHHHHhhCCCCCCHHHHHHHHHHHHHHHHHHhhcCCCCCeEecCCCCCCeeeCCCCcEEEeeeccccccCCC
Q 005040 502 LEFMPNGSLEKWLYSHNYFLDILQRLNIMIDVGSALEYLHHCHSSAPIIHCDLKPTNILLDENMVAHVSDFGISKLLGEG 581 (717)
Q Consensus 502 ~e~~~~g~L~~~l~~~~~~~~~~~~~~i~~~i~~~l~~LH~~~~~~~ivH~dlk~~Nill~~~~~~kl~Dfgl~~~~~~~ 581 (717)
||+ .+|+|.+++.... .+++..+..++.|++.||.||| +.+|+||||||+|||++ ++.+||+|||+++.....
T Consensus 88 ~e~-~~~~L~~~l~~~~-~~~~~~~~~i~~qi~~al~~lH----~~~iiHrDikp~NIll~-~~~~kl~DFG~a~~~~~~ 160 (343)
T 3dbq_A 88 MEC-GNIDLNSWLKKKK-SIDPWERKSYWKNMLEAVHTIH----QHGIVHSDLKPANFLIV-DGMLKLIDFGIANQMQPD 160 (343)
T ss_dssp ECC-CSEEHHHHHHHSC-CCCHHHHHHHHHHHHHHHHHHH----HTTCCCCCCCGGGEEEE-TTEEEECCCSSSCCC---
T ss_pred EeC-CCCCHHHHHHhcC-CCCHHHHHHHHHHHHHHHHHHH----hCCeecCCCCcceEEEE-CCcEEEeecccccccCcc
Confidence 995 5789999998754 4899999999999999999999 67899999999999997 678999999999877544
Q ss_pred CCceeeeccccCccccCCCccCC-----------CCcCcccchhhHHHHHHHHHhCCCCCCccccCcchHHHHHHhhCCC
Q 005040 582 EDSVIQTMTMATIGYMAPEYGSE-----------GIVSTKCDVYSYGVLLMETFTEKKPTDEMFTGEMSLRRWVKESLPH 650 (717)
Q Consensus 582 ~~~~~~~~~~~t~~y~aPE~~~~-----------~~~~~~~Dvws~G~il~el~tg~~p~~~~~~~~~~~~~~~~~~~~~ 650 (717)
..........||+.|+|||++.+ ..++.++|||||||++|||++|+.||....................
T Consensus 161 ~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~~~~~~~~~~~DiwslG~il~ell~g~~pf~~~~~~~~~~~~~~~~~~~~ 240 (343)
T 3dbq_A 161 TTSVVKDSQVGTVNYMPPEAIKDMSSSRENGKSKSKISPKSDVWSLGCILYYMTYGKTPFQQIINQISKLHAIIDPNHEI 240 (343)
T ss_dssp ---------CCCCSSCCHHHHHHCC-----------CCHHHHHHHHHHHHHHHHHSSCTTTTCCSHHHHHHHHHCTTSCC
T ss_pred cccccCCCCcCCcCcCCHHHHhhccccccccccccCCCchhhHHHHHHHHHHHHhCCCcchhhhhHHHHHHHHhcCCccc
Confidence 43333445679999999998754 6789999999999999999999999975322211111111111100
Q ss_pred chhhhccccchhhhhhhhhhHHHHHHHHHHHhhccCCCCCCCCCHHHHHHH
Q 005040 651 RLTEVVDANLVREEQAFSDKMDCLFSIMDLALDCCMDTPHKRIHMTDAAAK 701 (717)
Q Consensus 651 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~cl~~~P~~Rpt~~ev~~~ 701 (717)
.. +...+.++.+++.+||+.||++|||+.|+++.
T Consensus 241 ~~-----------------~~~~~~~l~~li~~~L~~dp~~Rpt~~e~l~h 274 (343)
T 3dbq_A 241 EF-----------------PDIPEKDLQDVLKCCLKRDPKQRISIPELLAH 274 (343)
T ss_dssp CC-----------------CCCSCHHHHHHHHHHTCSSTTTSCCHHHHHTS
T ss_pred CC-----------------cccCCHHHHHHHHHHcCCChhHCCCHHHHHhC
Confidence 00 01123457899999999999999999999864
No 100
>1qcf_A Haematopoetic cell kinase (HCK); tyrosine kinase-inhibitor complex, DOWN-regulated kinase, ordered activation loop; HET: PTR PP1; 2.00A {Homo sapiens} SCOP: b.34.2.1 d.93.1.1 d.144.1.7 PDB: 2c0i_A* 2c0o_A* 2c0t_A* 1ad5_A* 2hck_A* 3nhn_A 3hck_A 1bu1_A 3rea_B 3rbb_B
Probab=100.00 E-value=9.2e-42 Score=372.36 Aligned_cols=263 Identities=22% Similarity=0.400 Sum_probs=214.2
Q ss_pred HhccCCccccccccccEEEEEEEecCCCeEEEEEechhhHHHHHHHHHHHHHHHhcCCCceeeEeeeeecCCeeEEEEEc
Q 005040 425 ATDEFNECNLLGTGGFGSVYKGTLSDGTNVAIKIFNLQLERAFRSFDSECEILRNVRHRNLLKILGSCSNLDFKALVLEF 504 (717)
Q Consensus 425 ~~~~~~~~~~lg~G~~g~V~~~~~~~~~~vavK~~~~~~~~~~~~~~~e~~~l~~l~hpniv~~~~~~~~~~~~~lv~e~ 504 (717)
..++|++.+.||+|+||.||+|.++++..||||+++... ...+.+.+|++++++++||||+++++++. .+..++||||
T Consensus 186 ~~~~~~~~~~lG~G~fg~V~~~~~~~~~~vavK~~~~~~-~~~~~~~~E~~~l~~l~h~~iv~l~~~~~-~~~~~lv~e~ 263 (454)
T 1qcf_A 186 PRESLKLEKKLGAGQFGEVWMATYNKHTKVAVKTMKPGS-MSVEAFLAEANVMKTLQHDKLVKLHAVVT-KEPIYIITEF 263 (454)
T ss_dssp CGGGEEEEEEEECCSSEEEEEEEETTTEEEEEEEECTTS-BCHHHHHHHHHHHTTCCCTTBCCEEEEEC-SSSCEEEECC
T ss_pred chHHeEEEEEcccCCceEEEEEEECCccEEEEEEecCCC-ccHHHHHHHHHHHhhCCCCCEeeEEEEEe-CCccEEEEee
Confidence 346889999999999999999999888999999997653 23567899999999999999999999986 5678999999
Q ss_pred cCCCCHHHHHhhC-CCCCCHHHHHHHHHHHHHHHHHHhhcCCCCCeEecCCCCCCeeeCCCCcEEEeeeccccccCCCCC
Q 005040 505 MPNGSLEKWLYSH-NYFLDILQRLNIMIDVGSALEYLHHCHSSAPIIHCDLKPTNILLDENMVAHVSDFGISKLLGEGED 583 (717)
Q Consensus 505 ~~~g~L~~~l~~~-~~~~~~~~~~~i~~~i~~~l~~LH~~~~~~~ivH~dlk~~Nill~~~~~~kl~Dfgl~~~~~~~~~ 583 (717)
+++|+|.++++.. ...+++..+..++.|++.||+||| +.+|+||||||+|||++.++.+||+|||+++.......
T Consensus 264 ~~~g~L~~~l~~~~~~~~~~~~~~~~~~qi~~~l~~LH----~~~ivHrDlkp~Nill~~~~~~kl~DFG~a~~~~~~~~ 339 (454)
T 1qcf_A 264 MAKGSLLDFLKSDEGSKQPLPKLIDFSAQIAEGMAFIE----QRNYIHRDLRAANILVSASLVCKIADFGLARVIEDNEY 339 (454)
T ss_dssp CTTCBHHHHHHSHHHHTCCHHHHHHHHHHHHHHHHHHH----HTTCCCSSCSGGGEEECTTCCEEECSTTGGGGBCCHHH
T ss_pred cCCCcHHHHHHhccCCCCCHHHHHHHHHHHHHHHHHHH----hCCccCCCCCHHHEEECCCCcEEEeeCCCceEcCCCce
Confidence 9999999999854 234889999999999999999999 67899999999999999999999999999987643211
Q ss_pred ceeeeccccCccccCCCccCCCCcCcccchhhHHHHHHHHHh-CCCCCCccccCcchHHHHHHhhCCCchhhhccccchh
Q 005040 584 SVIQTMTMATIGYMAPEYGSEGIVSTKCDVYSYGVLLMETFT-EKKPTDEMFTGEMSLRRWVKESLPHRLTEVVDANLVR 662 (717)
Q Consensus 584 ~~~~~~~~~t~~y~aPE~~~~~~~~~~~Dvws~G~il~el~t-g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 662 (717)
.......+|+.|+|||++....++.++|||||||++|||+| |+.||.+.... .....+.....
T Consensus 340 -~~~~~~~~~~~y~aPE~~~~~~~~~~~DvwslG~~l~el~t~g~~P~~~~~~~--~~~~~i~~~~~------------- 403 (454)
T 1qcf_A 340 -TAREGAKFPIKWTAPEAINFGSFTIKSDVWSFGILLMEIVTYGRIPYPGMSNP--EVIRALERGYR------------- 403 (454)
T ss_dssp -HTTCSSSSCGGGSCHHHHHHCCCCHHHHHHHHHHHHHHHHTTSCCSSTTCCHH--HHHHHHHHTCC-------------
T ss_pred -eccCCCcccccccCHHHhccCCCCcHHHHHhHHHHHHHHHhCCCCCCCCCCHH--HHHHHHHcCCC-------------
Confidence 11223346788999999988899999999999999999999 99999764221 11111111100
Q ss_pred hhhhhhhhHHHHHHHHHHHhhccCCCCCCCCCHHHHHHHHHHhHHhhccch
Q 005040 663 EEQAFSDKMDCLFSIMDLALDCCMDTPHKRIHMTDAAAKLRKIKAKFLDDV 713 (717)
Q Consensus 663 ~~~~~~~~~~~~~~l~~li~~cl~~~P~~Rpt~~ev~~~L~~~~~~~~~~~ 713 (717)
.+.+..++.++.++|.+||+.||++|||+.++++.|+++......++
T Consensus 404 ----~~~~~~~~~~l~~li~~cl~~dp~~RPt~~~i~~~L~~~~~~~~~~~ 450 (454)
T 1qcf_A 404 ----MPRPENCPEELYNIMMRCWKNRPEERPTFEYIQSVLDDFYTATESQY 450 (454)
T ss_dssp ----CCCCTTSCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHTSSSSSCCSS
T ss_pred ----CCCCCCCCHHHHHHHHHHccCChhHCcCHHHHHHHHHHHHhcccccc
Confidence 01122456678999999999999999999999999999876554443
No 101
>3f66_A Hepatocyte growth factor receptor; C-Met, protein kinase, quinoxaline, alternative splicing, ATP-binding, chromosomal rearrangement; HET: IHX; 1.40A {Homo sapiens} PDB: 3i5n_A* 3u6h_A* 3u6i_A* 4deg_A* 4deh_A* 4dei_A* 3ccn_A* 2rfn_A* 2rfs_A* 3cd8_A* 3efj_A* 3efk_A* 3lq8_A* 3zxz_A* 2wkm_A* 2wgj_A* 3zze_A* 4aoi_A* 4ap7_A* 3q6w_A* ...
Probab=100.00 E-value=9.9e-41 Score=344.17 Aligned_cols=264 Identities=25% Similarity=0.396 Sum_probs=209.3
Q ss_pred hccCCccccccccccEEEEEEEecC----CCeEEEEEechhh-HHHHHHHHHHHHHHHhcCCCceeeEeeee-ecCCeeE
Q 005040 426 TDEFNECNLLGTGGFGSVYKGTLSD----GTNVAIKIFNLQL-ERAFRSFDSECEILRNVRHRNLLKILGSC-SNLDFKA 499 (717)
Q Consensus 426 ~~~~~~~~~lg~G~~g~V~~~~~~~----~~~vavK~~~~~~-~~~~~~~~~e~~~l~~l~hpniv~~~~~~-~~~~~~~ 499 (717)
..+|+..+.||+|+||.||+|...+ ...||+|.+.... ....+.+.+|++++++++||||+++++++ ...+..+
T Consensus 24 ~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~~~~~avk~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~~ 103 (298)
T 3f66_A 24 SLIVHFNEVIGRGHFGCVYHGTLLDNDGKKIHCAVKSLNRITDIGEVSQFLTEGIIMKDFSHPNVLSLLGICLRSEGSPL 103 (298)
T ss_dssp GEEEEEEEEEEEETTEEEEEEEEC-----CEEEEEEEETTCCSHHHHHHHHHHHHHHHTCCCTTBCCCCEEECCSSSCCE
T ss_pred ceehhhcceeeecCCceEEEEEEecCCCceeEEEEEecccCCCHHHHHHHHHHHHHHHhCCCCCEeeeeeEEEcCCCceE
Confidence 3578888999999999999998642 2358999887543 34456788999999999999999999985 5566789
Q ss_pred EEEEccCCCCHHHHHhhCCCCCCHHHHHHHHHHHHHHHHHHhhcCCCCCeEecCCCCCCeeeCCCCcEEEeeeccccccC
Q 005040 500 LVLEFMPNGSLEKWLYSHNYFLDILQRLNIMIDVGSALEYLHHCHSSAPIIHCDLKPTNILLDENMVAHVSDFGISKLLG 579 (717)
Q Consensus 500 lv~e~~~~g~L~~~l~~~~~~~~~~~~~~i~~~i~~~l~~LH~~~~~~~ivH~dlk~~Nill~~~~~~kl~Dfgl~~~~~ 579 (717)
+||||+++|+|.+++......+++..+..++.|++.||+||| +.+|+||||||+||+++.++.+||+|||++....
T Consensus 104 ~v~e~~~~~~L~~~l~~~~~~~~~~~~~~i~~ql~~~l~~lH----~~~i~H~dikp~Nil~~~~~~~kl~Dfg~a~~~~ 179 (298)
T 3f66_A 104 VVLPYMKHGDLRNFIRNETHNPTVKDLIGFGLQVAKGMKYLA----SKKFVHRDLAARNCMLDEKFTVKVADFGLARDMY 179 (298)
T ss_dssp EEEECCTTCBHHHHHHCTTCCCCHHHHHHHHHHHHHHHHHHH----HTTCCCSCCSGGGEEECTTCCEEECSCGGGCCCS
T ss_pred EEEeCCCCCCHHHHHHhcccCCCHHHHHHHHHHHHHHHHHHH----hCCccCCCCchheEEECCCCCEEECccccccccc
Confidence 999999999999999877777899999999999999999999 6789999999999999999999999999998764
Q ss_pred CCCC--ceeeeccccCccccCCCccCCCCcCcccchhhHHHHHHHHHh-CCCCCCccccCcchHHHHHHhhCCCchhhhc
Q 005040 580 EGED--SVIQTMTMATIGYMAPEYGSEGIVSTKCDVYSYGVLLMETFT-EKKPTDEMFTGEMSLRRWVKESLPHRLTEVV 656 (717)
Q Consensus 580 ~~~~--~~~~~~~~~t~~y~aPE~~~~~~~~~~~Dvws~G~il~el~t-g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~ 656 (717)
.... ........+|+.|+|||...+..++.++||||+|+++|||++ |.+||...... ............
T Consensus 180 ~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~~~~~~~~~~~~~--~~~~~~~~~~~~------ 251 (298)
T 3f66_A 180 DKEYYSVHNKTGAKLPVKWMALESLQTQKFTTKSDVWSFGVLLWELMTRGAPPYPDVNTF--DITVYLLQGRRL------ 251 (298)
T ss_dssp CGGGCBC-----CCBCGGGSCHHHHHHCCCCHHHHHHHHHHHHHHHHTTSCCSSTTSCTT--THHHHHHTTCCC------
T ss_pred ccchhccccccCCCCCccccChHHhcCCCCChHHHHHHHHHHHHHHHhCCCCCCccCCHH--HHHHHHhcCCCC------
Confidence 4321 122334467889999999988899999999999999999999 55556543221 122211111100
Q ss_pred cccchhhhhhhhhhHHHHHHHHHHHhhccCCCCCCCCCHHHHHHHHHHhHHhhccc
Q 005040 657 DANLVREEQAFSDKMDCLFSIMDLALDCCMDTPHKRIHMTDAAAKLRKIKAKFLDD 712 (717)
Q Consensus 657 ~~~~~~~~~~~~~~~~~~~~l~~li~~cl~~~P~~Rpt~~ev~~~L~~~~~~~~~~ 712 (717)
..+..++..+.+++.+||+.||++|||++|+++.|+++.+.+..+
T Consensus 252 -----------~~~~~~~~~l~~li~~~l~~~p~~Rps~~ell~~L~~~~~~~~~~ 296 (298)
T 3f66_A 252 -----------LQPEYCPDPLYEVMLKCWHPKAEMRPSFSELVSRISAIFSTFIGE 296 (298)
T ss_dssp -----------CCCTTCCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHHHTSCCS
T ss_pred -----------CCCccCCHHHHHHHHHHcCCChhhCcCHHHHHHHHHHHHHhhccC
Confidence 001123456889999999999999999999999999998877654
No 102
>3g2f_A Bone morphogenetic protein receptor type-2; kinase, structural genomics, structural genomics consortium, ATP-binding, disease mutation; HET: ADP; 2.35A {Homo sapiens}
Probab=100.00 E-value=3.4e-41 Score=353.97 Aligned_cols=277 Identities=25% Similarity=0.351 Sum_probs=201.5
Q ss_pred hccCCccccccccccEEEEEEEecCCCeEEEEEechhhHHHHHHHHHH--HHHHHhcCCCceeeEeeee-----ecCCee
Q 005040 426 TDEFNECNLLGTGGFGSVYKGTLSDGTNVAIKIFNLQLERAFRSFDSE--CEILRNVRHRNLLKILGSC-----SNLDFK 498 (717)
Q Consensus 426 ~~~~~~~~~lg~G~~g~V~~~~~~~~~~vavK~~~~~~~~~~~~~~~e--~~~l~~l~hpniv~~~~~~-----~~~~~~ 498 (717)
.++|++.+.||+|+||.||+|+. +++.||||++..... ..+..| +..+..++||||+++++++ ......
T Consensus 12 ~~~y~~~~~lg~G~~g~Vy~~~~-~~~~vavK~~~~~~~---~~~~~e~~~~~~~~~~h~~i~~~~~~~~~~~~~~~~~~ 87 (336)
T 3g2f_A 12 LDNLKLLELIGRGRYGAVYKGSL-DERPVAVKVFSFANR---QNFINEKNIYRVPLMEHDNIARFIVGDERVTADGRMEY 87 (336)
T ss_dssp TTSEEEEEEEEECSSEEEEEEEE-TTEEEEEEEEEGGGH---HHHHHHHHHHTSTTCCCTTBCCEEEEEEEECTTSCEEE
T ss_pred hHHhheeeecccCCCeEEEEEEE-CCeEEEEEEeeccch---hhHHHHHHHHHHHhccCcchhhheecccccccCCCceE
Confidence 36899999999999999999987 689999999975543 233334 4445558999999999854 233467
Q ss_pred EEEEEccCCCCHHHHHhhCCCCCCHHHHHHHHHHHHHHHHHHhhcCCCC---------CeEecCCCCCCeeeCCCCcEEE
Q 005040 499 ALVLEFMPNGSLEKWLYSHNYFLDILQRLNIMIDVGSALEYLHHCHSSA---------PIIHCDLKPTNILLDENMVAHV 569 (717)
Q Consensus 499 ~lv~e~~~~g~L~~~l~~~~~~~~~~~~~~i~~~i~~~l~~LH~~~~~~---------~ivH~dlk~~Nill~~~~~~kl 569 (717)
++||||+++|+|.+++.... .++..+..++.|+++||+||| +. +|+||||||+||+++.++.+||
T Consensus 88 ~lv~e~~~~g~L~~~l~~~~--~~~~~~~~i~~qi~~~L~~LH----~~~~~~~~~~~~ivH~Dikp~Nill~~~~~~kL 161 (336)
T 3g2f_A 88 LLVMEYYPNGSLXKYLSLHT--SDWVSSCRLAHSVTRGLAYLH----TELPRGDHYKPAISHRDLNSRNVLVKNDGTCVI 161 (336)
T ss_dssp EEEECCCTTCBHHHHHHHCC--BCHHHHHHHHHHHHHHHHHHH----CCBCCGGGCBCCEECSSCSGGGEEECTTSCEEE
T ss_pred EEEEecCCCCcHHHHHhhcc--cchhHHHHHHHHHHHHHHHHH----hhhccccccccceeecccccceEEEcCCCcEEE
Confidence 89999999999999998765 589999999999999999999 56 9999999999999999999999
Q ss_pred eeeccccccCCCCC------ceeeeccccCccccCCCccCC-------CCcCcccchhhHHHHHHHHHhCCCCCCccccC
Q 005040 570 SDFGISKLLGEGED------SVIQTMTMATIGYMAPEYGSE-------GIVSTKCDVYSYGVLLMETFTEKKPTDEMFTG 636 (717)
Q Consensus 570 ~Dfgl~~~~~~~~~------~~~~~~~~~t~~y~aPE~~~~-------~~~~~~~Dvws~G~il~el~tg~~p~~~~~~~ 636 (717)
+|||++..+..... ........||+.|+|||++.+ ..++.++|||||||++|||++|+.||......
T Consensus 162 ~DFG~a~~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~~~~~~~DiwslG~il~ell~g~~p~~~~~~~ 241 (336)
T 3g2f_A 162 SDFGLSMRLTGNRLVRPGEEDNAAISEVGTIRYMAPEVLEGAVNLRDXESALKQVDMYALGLIYWEIFMRCTDLFPGESV 241 (336)
T ss_dssp CCCTTCEECSSSSCC---------CCTTSCGGGCCHHHHTTCCCGGGHHHHHHHHHHHHHHHHHHHHHTTBGGGSTTSCC
T ss_pred eeccceeecccccccCccccccccccCCCccceeCchhhcCCcccccccccccccchHHHHHHHHHHHhcCCcCCCccch
Confidence 99999987653221 112234468999999998876 46778999999999999999998775432111
Q ss_pred cchHHHHHHhhC-CCch---hhhcc-ccc-hhhhhhhhhhHHHHHHHHHHHhhccCCCCCCCCCHHHHHHHHHHhHHhhc
Q 005040 637 EMSLRRWVKESL-PHRL---TEVVD-ANL-VREEQAFSDKMDCLFSIMDLALDCCMDTPHKRIHMTDAAAKLRKIKAKFL 710 (717)
Q Consensus 637 ~~~~~~~~~~~~-~~~~---~~~~~-~~~-~~~~~~~~~~~~~~~~l~~li~~cl~~~P~~Rpt~~ev~~~L~~~~~~~~ 710 (717)
......+..... .... ...+. ... ............++.++.+++.+||+.||++|||++|+++.|+++...+.
T Consensus 242 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~cl~~dP~~Rps~~e~l~~L~~ll~~~~ 321 (336)
T 3g2f_A 242 PEYQMAFQTEVGNHPTFEDMQVLVSREKQRPKFPEAWKENSLAVRSLKETIEDCWDQDAEARLTAQXAEERMAELMMIWE 321 (336)
T ss_dssp CCCCCTTHHHHCSSCCHHHHHHHHTTSCCCCCCCTTCCCCSHHHHHHHHHHHHHSCSSGGGSCCHHHHHHHHHHHHHCCC
T ss_pred hHHHHhhhcccCCCchHHHHHhhhcccccCCCCCcccccccchHHHHHHHHHHHhcCChhhCcchHHHHHHHHHHHHHHH
Confidence 110000000000 0000 00000 000 00001112223466789999999999999999999999999999988776
Q ss_pred cc
Q 005040 711 DD 712 (717)
Q Consensus 711 ~~ 712 (717)
.+
T Consensus 322 ~~ 323 (336)
T 3g2f_A 322 RN 323 (336)
T ss_dssp C-
T ss_pred hc
Confidence 54
No 103
>2vd5_A DMPK protein; serine/threonine-protein kinase, kinase, transferase, ATP-BI nucleotide-binding, cardiac contractility, muscle different; HET: BI8; 2.80A {Homo sapiens}
Probab=100.00 E-value=4e-41 Score=359.95 Aligned_cols=259 Identities=23% Similarity=0.296 Sum_probs=206.3
Q ss_pred HHHHHhccCCccccccccccEEEEEEEec-CCCeEEEEEechhh---HHHHHHHHHHHHHHHhcCCCceeeEeeeeecCC
Q 005040 421 DIRRATDEFNECNLLGTGGFGSVYKGTLS-DGTNVAIKIFNLQL---ERAFRSFDSECEILRNVRHRNLLKILGSCSNLD 496 (717)
Q Consensus 421 ~~~~~~~~~~~~~~lg~G~~g~V~~~~~~-~~~~vavK~~~~~~---~~~~~~~~~e~~~l~~l~hpniv~~~~~~~~~~ 496 (717)
+.+...++|++.+.||+|+||.||+|+.+ +++.||+|++.+.. ....+.+.+|..++..++||||+++++++.+.+
T Consensus 55 ~~~~~~~~f~~~~~lG~G~fG~V~~~~~~~~~~~vAiK~l~k~~~~~~~~~~~~~~E~~il~~~~hp~Iv~l~~~~~~~~ 134 (412)
T 2vd5_A 55 EVRLQRDDFEILKVIGRGAFSEVAVVKMKQTGQVYAMKIMNKWDMLKRGEVSCFREERDVLVNGDRRWITQLHFAFQDEN 134 (412)
T ss_dssp HHSCCGGGEEEEEEEEECSSCEEEEEEETTTCCEEEEEEEEHHHHHHHGGGCCHHHHHHHHHHSCTTTBCCEEEEEECSS
T ss_pred hccCChhhEEEEEEEeeCCCeEEEEEEECCCCCEEEEEEEeHHHhhhHHHHHHHHHHHHHHHhcCCCCeeeEEEEEeeCC
Confidence 33445689999999999999999999975 79999999997643 223345788999999999999999999999999
Q ss_pred eeEEEEEccCCCCHHHHHhhCCCCCCHHHHHHHHHHHHHHHHHHhhcCCCCCeEecCCCCCCeeeCCCCcEEEeeecccc
Q 005040 497 FKALVLEFMPNGSLEKWLYSHNYFLDILQRLNIMIDVGSALEYLHHCHSSAPIIHCDLKPTNILLDENMVAHVSDFGISK 576 (717)
Q Consensus 497 ~~~lv~e~~~~g~L~~~l~~~~~~~~~~~~~~i~~~i~~~l~~LH~~~~~~~ivH~dlk~~Nill~~~~~~kl~Dfgl~~ 576 (717)
..|+||||+++|+|.+++.+.+..+++..+..++.|++.||.||| +.+|+||||||+|||++.++++||+|||+++
T Consensus 135 ~~~lVmE~~~gg~L~~~l~~~~~~l~~~~~~~~~~qi~~aL~~LH----~~giiHrDLKp~NILld~~g~vkL~DFGla~ 210 (412)
T 2vd5_A 135 YLYLVMEYYVGGDLLTLLSKFGERIPAEMARFYLAEIVMAIDSVH----RLGYVHRDIKPDNILLDRCGHIRLADFGSCL 210 (412)
T ss_dssp EEEEEECCCCSCBHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHHH----HTTEECCCCSGGGEEECTTSCEEECCCTTCE
T ss_pred EEEEEEcCCCCCcHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHH----HCCeeecccCHHHeeecCCCCEEEeechhhe
Confidence 999999999999999999876656999999999999999999999 6789999999999999999999999999998
Q ss_pred ccCCCCCceeeeccccCccccCCCccC-------CCCcCcccchhhHHHHHHHHHhCCCCCCccccCcchHHHHHHhhCC
Q 005040 577 LLGEGEDSVIQTMTMATIGYMAPEYGS-------EGIVSTKCDVYSYGVLLMETFTEKKPTDEMFTGEMSLRRWVKESLP 649 (717)
Q Consensus 577 ~~~~~~~~~~~~~~~~t~~y~aPE~~~-------~~~~~~~~Dvws~G~il~el~tg~~p~~~~~~~~~~~~~~~~~~~~ 649 (717)
....... ......+||+.|+|||++. ...++.++|||||||++|||++|+.||......+ .........
T Consensus 211 ~~~~~~~-~~~~~~~Gt~~Y~APE~l~~~~~~~~~~~~~~~~DiwSlGvilyelltG~~Pf~~~~~~~-~~~~i~~~~-- 286 (412)
T 2vd5_A 211 KLRADGT-VRSLVAVGTPDYLSPEILQAVGGGPGTGSYGPECDWWALGVFAYEMFYGQTPFYADSTAE-TYGKIVHYK-- 286 (412)
T ss_dssp ECCTTSC-EECSSCCSCGGGCCHHHHHHHHTCTTCSEECTHHHHHHHHHHHHHHHHSSCTTCCSSHHH-HHHHHHTHH--
T ss_pred eccCCCc-cccceeccccCcCCHHHHhhcccCcCCCCCChHHhhhHHhHHHHHHHhCCCCCCCCCHHH-HHHHHHhcc--
Confidence 7654322 2223457999999999876 4678999999999999999999999997632211 111111000
Q ss_pred CchhhhccccchhhhhhhhhhHHHHHHHHHHHhhccCCCCCCC---CCHHHHHH
Q 005040 650 HRLTEVVDANLVREEQAFSDKMDCLFSIMDLALDCCMDTPHKR---IHMTDAAA 700 (717)
Q Consensus 650 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~cl~~~P~~R---pt~~ev~~ 700 (717)
... .+. .....++.++.++|.+||. +|++| |+++|+++
T Consensus 287 ----~~~--~~p------~~~~~~s~~~~dli~~lL~-~p~~Rlgr~~~~ei~~ 327 (412)
T 2vd5_A 287 ----EHL--SLP------LVDEGVPEEARDFIQRLLC-PPETRLGRGGAGDFRT 327 (412)
T ss_dssp ----HHC--CCC----------CCCHHHHHHHHTTSS-CGGGCTTTTTHHHHHT
T ss_pred ----cCc--CCC------ccccCCCHHHHHHHHHHcC-ChhhcCCCCCHHHHhc
Confidence 000 000 0012345678899999999 99998 58888764
No 104
>3a8x_A Protein kinase C IOTA type; transferase; HET: TPO; 2.00A {Homo sapiens} PDB: 3a8w_A* 1zrz_A*
Probab=100.00 E-value=1.2e-40 Score=349.57 Aligned_cols=249 Identities=19% Similarity=0.271 Sum_probs=200.4
Q ss_pred hccCCccccccccccEEEEEEEec-CCCeEEEEEechhh---HHHHHHHHHHHHHHHhc-CCCceeeEeeeeecCCeeEE
Q 005040 426 TDEFNECNLLGTGGFGSVYKGTLS-DGTNVAIKIFNLQL---ERAFRSFDSECEILRNV-RHRNLLKILGSCSNLDFKAL 500 (717)
Q Consensus 426 ~~~~~~~~~lg~G~~g~V~~~~~~-~~~~vavK~~~~~~---~~~~~~~~~e~~~l~~l-~hpniv~~~~~~~~~~~~~l 500 (717)
.++|++.+.||+|+||.||+|+.+ +++.||+|++.... ....+.+.+|..+++++ +||||+++++++.+.+..|+
T Consensus 8 ~~~y~~~~~lG~G~fg~V~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~E~~~l~~~~~hp~iv~l~~~~~~~~~~~l 87 (345)
T 3a8x_A 8 LQDFDLLRVIGRGSYAKVLLVRLKKTDRIYAMKVVKKELVNDDEDIDWVQTEKHVFEQASNHPFLVGLHSCFQTESRLFF 87 (345)
T ss_dssp GGGEEEEEEEEECSSEEEEEEEETTTTEEEEEEEEEGGGSCSHHHHHHHHHHHHHHHHTTTCTTBCCEEEEEECSSEEEE
T ss_pred hhheEEEEEEEecCCeEEEEEEECCCCCEEEEEEEEhHHhcchHHHHHHHHHHHHHHhcCCCCccCeEEEEEEeCCEEEE
Confidence 368999999999999999999976 68899999997653 34456788899999988 89999999999999999999
Q ss_pred EEEccCCCCHHHHHhhCCCCCCHHHHHHHHHHHHHHHHHHhhcCCCCCeEecCCCCCCeeeCCCCcEEEeeeccccccCC
Q 005040 501 VLEFMPNGSLEKWLYSHNYFLDILQRLNIMIDVGSALEYLHHCHSSAPIIHCDLKPTNILLDENMVAHVSDFGISKLLGE 580 (717)
Q Consensus 501 v~e~~~~g~L~~~l~~~~~~~~~~~~~~i~~~i~~~l~~LH~~~~~~~ivH~dlk~~Nill~~~~~~kl~Dfgl~~~~~~ 580 (717)
||||+++|+|.+++...+ .+++..+..++.|++.||.||| +.+|+||||||+||+++.++++||+|||+++....
T Consensus 88 v~e~~~gg~L~~~l~~~~-~l~~~~~~~~~~qi~~aL~~LH----~~~ivHrDlkp~NIll~~~g~~kL~DFG~a~~~~~ 162 (345)
T 3a8x_A 88 VIEYVNGGDLMFHMQRQR-KLPEEHARFYSAEISLALNYLH----ERGIIYRDLKLDNVLLDSEGHIKLTDYGMCKEGLR 162 (345)
T ss_dssp EECCCCSCBHHHHHHHHS-SCCHHHHHHHHHHHHHHHHHHH----HTTCBCCCCCGGGEEECTTSCEEECCGGGCBCSCC
T ss_pred EEeCCCCCcHHHHHHHcC-CCCHHHHHHHHHHHHHHHHHHH----HCCceecCCCHHHEEECCCCCEEEEeccccccccC
Confidence 999999999999998654 4899999999999999999999 67899999999999999999999999999986432
Q ss_pred CCCceeeeccccCccccCCCccCCCCcCcccchhhHHHHHHHHHhCCCCCCccccCcch---HHHHHHhhCCCchhhhcc
Q 005040 581 GEDSVIQTMTMATIGYMAPEYGSEGIVSTKCDVYSYGVLLMETFTEKKPTDEMFTGEMS---LRRWVKESLPHRLTEVVD 657 (717)
Q Consensus 581 ~~~~~~~~~~~~t~~y~aPE~~~~~~~~~~~Dvws~G~il~el~tg~~p~~~~~~~~~~---~~~~~~~~~~~~~~~~~~ 657 (717)
... .....+||+.|+|||++.+..++.++||||+||++|||++|+.||......... ....... .+..
T Consensus 163 ~~~--~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~ell~g~~pf~~~~~~~~~~~~~~~~~~~-------~i~~ 233 (345)
T 3a8x_A 163 PGD--TTSTFCGTPNYIAPEILRGEDYGFSVDWWALGVLMFEMMAGRSPFDIVGSSDNPDQNTEDYLFQ-------VILE 233 (345)
T ss_dssp TTC--CBCCCCSCGGGCCHHHHTTCCBCTHHHHHHHHHHHHHHHHSSCTTTTTTC-------CHHHHHH-------HHHH
T ss_pred CCC--cccccCCCccccCccccCCCCCChHHhHHHHHHHHHHHHhCCCCcCCcccccccccccHHHHHH-------HHHc
Confidence 221 224457999999999999999999999999999999999999999652211100 0000000 0000
Q ss_pred ccchhhhhhhhhhHHHHHHHHHHHhhccCCCCCCCCCH
Q 005040 658 ANLVREEQAFSDKMDCLFSIMDLALDCCMDTPHKRIHM 695 (717)
Q Consensus 658 ~~~~~~~~~~~~~~~~~~~l~~li~~cl~~~P~~Rpt~ 695 (717)
... .+ +..++.++.+++.+||+.||++||++
T Consensus 234 ~~~-----~~--p~~~s~~~~~li~~lL~~dP~~R~~~ 264 (345)
T 3a8x_A 234 KQI-----RI--PRSLSVKAASVLKSFLNKDPKERLGC 264 (345)
T ss_dssp CCC-----CC--CTTSCHHHHHHHHHHTCSSTTTSTTC
T ss_pred CCC-----CC--CCCCCHHHHHHHHHHhcCCHhHCCCC
Confidence 000 01 11345668899999999999999996
No 105
>3p1a_A MYT1 kinase, membrane-associated tyrosine- and threonine-speci inhibitory kinase; structural genomics, structural genomics consortium, SGC; 1.70A {Homo sapiens}
Probab=100.00 E-value=1.3e-40 Score=345.16 Aligned_cols=244 Identities=22% Similarity=0.216 Sum_probs=195.1
Q ss_pred ccCCccccccccccEEEEEEEec-CCCeEEEEEechhh--HHHHHHHHHHHHHHHhc-CCCceeeEeeeeecCCeeEEEE
Q 005040 427 DEFNECNLLGTGGFGSVYKGTLS-DGTNVAIKIFNLQL--ERAFRSFDSECEILRNV-RHRNLLKILGSCSNLDFKALVL 502 (717)
Q Consensus 427 ~~~~~~~~lg~G~~g~V~~~~~~-~~~~vavK~~~~~~--~~~~~~~~~e~~~l~~l-~hpniv~~~~~~~~~~~~~lv~ 502 (717)
++|+..++||+|+||+||+|... +++.||||++.... .........|+..+.++ +||||+++++++.+.+..++||
T Consensus 57 ~~y~~~~~LG~G~~g~Vy~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~e~~~~~~~~~h~~iv~l~~~~~~~~~~~lv~ 136 (311)
T 3p1a_A 57 QSFQRLSRLGHGSYGEVFKVRSKEDGRLYAVKRSMSPFRGPKDRARKLAEVGSHEKVGQHPCCVRLEQAWEEGGILYLQT 136 (311)
T ss_dssp HHEEEEEEEEEETTEEEEEEEETTTSCEEEEEEESSSCCSHHHHHHHHHHHHHHHHHCCCTTBCCEEEEEEETTEEEEEE
T ss_pred hheeeeheeccCCCeEEEEEEECCCCeEEEEEEecccccChHHHHHHHHHHHHHHHhcCCCcEEEEEEEEEeCCEEEEEE
Confidence 68999999999999999999986 79999999885432 22334455566666655 8999999999999999999999
Q ss_pred EccCCCCHHHHHhhCCCCCCHHHHHHHHHHHHHHHHHHhhcCCCCCeEecCCCCCCeeeCCCCcEEEeeeccccccCCCC
Q 005040 503 EFMPNGSLEKWLYSHNYFLDILQRLNIMIDVGSALEYLHHCHSSAPIIHCDLKPTNILLDENMVAHVSDFGISKLLGEGE 582 (717)
Q Consensus 503 e~~~~g~L~~~l~~~~~~~~~~~~~~i~~~i~~~l~~LH~~~~~~~ivH~dlk~~Nill~~~~~~kl~Dfgl~~~~~~~~ 582 (717)
||+ +++|.+++...+..+++..+..++.|++.||+||| +.+|+||||||+||+++.++.+||+|||++.......
T Consensus 137 e~~-~~~L~~~~~~~~~~l~~~~~~~i~~qi~~aL~~LH----~~~ivH~Dikp~NIll~~~~~~kl~DFG~a~~~~~~~ 211 (311)
T 3p1a_A 137 ELC-GPSLQQHCEAWGASLPEAQVWGYLRDTLLALAHLH----SQGLVHLDVKPANIFLGPRGRCKLGDFGLLVELGTAG 211 (311)
T ss_dssp ECC-CCBHHHHHHHHCSCCCHHHHHHHHHHHHHHHHHHH----HTTEECCCCSGGGEEECGGGCEEECCCTTCEECC---
T ss_pred ecc-CCCHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHH----HCCEecCCCCHHHEEECCCCCEEEccceeeeecccCC
Confidence 999 67999999877777999999999999999999999 5789999999999999999999999999998764332
Q ss_pred CceeeeccccCccccCCCccCCCCcCcccchhhHHHHHHHHHhCCCCCCccccCcchHHHHHHhhCCCchhhhccccchh
Q 005040 583 DSVIQTMTMATIGYMAPEYGSEGIVSTKCDVYSYGVLLMETFTEKKPTDEMFTGEMSLRRWVKESLPHRLTEVVDANLVR 662 (717)
Q Consensus 583 ~~~~~~~~~~t~~y~aPE~~~~~~~~~~~Dvws~G~il~el~tg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 662 (717)
......||++|+|||++.+ .++.++|||||||++|||++|..|+.... ..... .......
T Consensus 212 ---~~~~~~gt~~y~aPE~~~~-~~~~~~DiwslG~il~el~~g~~~~~~~~----~~~~~------------~~~~~~~ 271 (311)
T 3p1a_A 212 ---AGEVQEGDPRYMAPELLQG-SYGTAADVFSLGLTILEVACNMELPHGGE----GWQQL------------RQGYLPP 271 (311)
T ss_dssp ------CCCCCGGGCCGGGGGT-CCSTHHHHHHHHHHHHHHHHTCCCCSSHH----HHHHH------------TTTCCCH
T ss_pred ---CCcccCCCccccCHhHhcC-CCCchhhHHHHHHHHHHHHhCCCCCCCcc----HHHHH------------hccCCCc
Confidence 2234568999999998876 78999999999999999999977754311 11110 0000000
Q ss_pred hhhhhhhhHHHHHHHHHHHhhccCCCCCCCCCHHHHHH
Q 005040 663 EEQAFSDKMDCLFSIMDLALDCCMDTPHKRIHMTDAAA 700 (717)
Q Consensus 663 ~~~~~~~~~~~~~~l~~li~~cl~~~P~~Rpt~~ev~~ 700 (717)
.....++.++.+++.+||+.||++|||++|+++
T Consensus 272 -----~~~~~~~~~l~~li~~~L~~dP~~Rpt~~ell~ 304 (311)
T 3p1a_A 272 -----EFTAGLSSELRSVLVMMLEPDPKLRATAEALLA 304 (311)
T ss_dssp -----HHHTTSCHHHHHHHHHHSCSSTTTSCCHHHHHT
T ss_pred -----ccccCCCHHHHHHHHHHcCCChhhCcCHHHHHh
Confidence 011234567899999999999999999999986
No 106
>3brb_A Proto-oncogene tyrosine-protein kinase MER; ATP-binding, disease mutation, glycoprotein, nucleot binding, phosphorylation, receptor; HET: ADP; 1.90A {Homo sapiens} PDB: 3bpr_A* 2p0c_A*
Probab=100.00 E-value=1.5e-40 Score=345.31 Aligned_cols=267 Identities=25% Similarity=0.441 Sum_probs=203.0
Q ss_pred HHHHhccCCccccccccccEEEEEEEec----CCCeEEEEEechhh--HHHHHHHHHHHHHHHhcCCCceeeEeeeeecC
Q 005040 422 IRRATDEFNECNLLGTGGFGSVYKGTLS----DGTNVAIKIFNLQL--ERAFRSFDSECEILRNVRHRNLLKILGSCSNL 495 (717)
Q Consensus 422 ~~~~~~~~~~~~~lg~G~~g~V~~~~~~----~~~~vavK~~~~~~--~~~~~~~~~e~~~l~~l~hpniv~~~~~~~~~ 495 (717)
.....++|.+.+.||+|+||.||+|... +++.||+|++.... ....+.+.+|++++++++||||+++++++.+.
T Consensus 29 ~~~~~~~y~~~~~lg~G~~g~V~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~ 108 (313)
T 3brb_A 29 VVIDRNLLILGKILGEGEFGSVMEGNLKQEDGTSLKVAVKTMKLDNSSQREIEEFLSEAACMKDFSHPNVIRLLGVCIEM 108 (313)
T ss_dssp TBCCGGGEEEEEEEEC-CCCCEEEEEEECTTSCEEEEEEEEC---CCCHHHHHHHHHHHHHHHTCCCTTBCCCCEEEEC-
T ss_pred cccCHHHeeeccceeecCCeEEEEEEEeccCCceeEEEEEEEeccccchhHHHHHHHHHHHHhcCCCCCeeeeeEEEeec
Confidence 3344578999999999999999999864 34579999987542 34456788999999999999999999998765
Q ss_pred C-----eeEEEEEccCCCCHHHHHhh-----CCCCCCHHHHHHHHHHHHHHHHHHhhcCCCCCeEecCCCCCCeeeCCCC
Q 005040 496 D-----FKALVLEFMPNGSLEKWLYS-----HNYFLDILQRLNIMIDVGSALEYLHHCHSSAPIIHCDLKPTNILLDENM 565 (717)
Q Consensus 496 ~-----~~~lv~e~~~~g~L~~~l~~-----~~~~~~~~~~~~i~~~i~~~l~~LH~~~~~~~ivH~dlk~~Nill~~~~ 565 (717)
. ..++||||+++|+|.+++.. ....+++..++.++.|+++||.||| +.+|+||||||+||+++.++
T Consensus 109 ~~~~~~~~~~v~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~i~~qi~~aL~~LH----~~~ivH~dikp~NIli~~~~ 184 (313)
T 3brb_A 109 SSQGIPKPMVILPFMKYGDLHTYLLYSRLETGPKHIPLQTLLKFMVDIALGMEYLS----NRNFLHRDLAARNCMLRDDM 184 (313)
T ss_dssp ------CEEEEEECCTTCBHHHHHHHTTBTTSCCCCCHHHHHHHHHHHHHHHHHHH----TTTCCCCCCSGGGEEECTTS
T ss_pred cccCCcccEEEEecccCCCHHHHHHHhhhhcCCccCCHHHHHHHHHHHHHHHHHHH----hCCcccCCCCcceEEEcCCC
Confidence 4 35999999999999999953 2356899999999999999999999 78999999999999999999
Q ss_pred cEEEeeeccccccCCCCCceeeeccccCccccCCCccCCCCcCcccchhhHHHHHHHHHh-CCCCCCccccCcchHHHHH
Q 005040 566 VAHVSDFGISKLLGEGEDSVIQTMTMATIGYMAPEYGSEGIVSTKCDVYSYGVLLMETFT-EKKPTDEMFTGEMSLRRWV 644 (717)
Q Consensus 566 ~~kl~Dfgl~~~~~~~~~~~~~~~~~~t~~y~aPE~~~~~~~~~~~Dvws~G~il~el~t-g~~p~~~~~~~~~~~~~~~ 644 (717)
.+||+|||++................+++.|+|||.+.+..++.++||||||+++|||++ |..||...... .....+
T Consensus 185 ~~kl~Dfg~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~el~~~g~~p~~~~~~~--~~~~~~ 262 (313)
T 3brb_A 185 TVCVADFGLSKKIYSGDYYRQGRIAKMPVKWIAIESLADRVYTSKSDVWAFGVTMWEIATRGMTPYPGVQNH--EMYDYL 262 (313)
T ss_dssp CEEECSCSCC----------------CCGGGSCHHHHHSSCCCHHHHHHHHHHHHHHHHTTSCCSSTTCCGG--GHHHHH
T ss_pred cEEEeecCcceecccccccCcccccCCCccccCchhhcCCCccchhhhHHHHHHHHHHHhcCCCCCccCCHH--HHHHHH
Confidence 999999999987654433333344567889999999999999999999999999999999 88898763222 122211
Q ss_pred HhhCCCchhhhccccchhhhhhhhhhHHHHHHHHHHHhhccCCCCCCCCCHHHHHHHHHHhHHhhcc
Q 005040 645 KESLPHRLTEVVDANLVREEQAFSDKMDCLFSIMDLALDCCMDTPHKRIHMTDAAAKLRKIKAKFLD 711 (717)
Q Consensus 645 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~cl~~~P~~Rpt~~ev~~~L~~~~~~~~~ 711 (717)
...... .....++.++.+++.+||+.||++|||+.++++.|+++.+..++
T Consensus 263 ~~~~~~-----------------~~~~~~~~~l~~li~~~l~~dp~~Rps~~~l~~~L~~l~~~lp~ 312 (313)
T 3brb_A 263 LHGHRL-----------------KQPEDCLDELYEIMYSCWRTDPLDRPTFSVLRLQLEKLLESLPD 312 (313)
T ss_dssp HTTCCC-----------------CCBTTCCHHHHHHHHHTTCSSGGGSCCHHHHHHHHHHHHHHC--
T ss_pred HcCCCC-----------------CCCccccHHHHHHHHHHcCCChhhCcCHHHHHHHHHHHHHhcCC
Confidence 111100 01123456688999999999999999999999999999887765
No 107
>3lzb_A Epidermal growth factor receptor; epidermal growth factor kinase domain, multitargeted small M kinase inhibitor; HET: ITI; 2.70A {Homo sapiens}
Probab=100.00 E-value=1.8e-41 Score=353.92 Aligned_cols=258 Identities=26% Similarity=0.430 Sum_probs=202.4
Q ss_pred hccCCccccccccccEEEEEEEec-CCCe----EEEEEechhh-HHHHHHHHHHHHHHHhcCCCceeeEeeeeecCCeeE
Q 005040 426 TDEFNECNLLGTGGFGSVYKGTLS-DGTN----VAIKIFNLQL-ERAFRSFDSECEILRNVRHRNLLKILGSCSNLDFKA 499 (717)
Q Consensus 426 ~~~~~~~~~lg~G~~g~V~~~~~~-~~~~----vavK~~~~~~-~~~~~~~~~e~~~l~~l~hpniv~~~~~~~~~~~~~ 499 (717)
.++|++.+.||+|+||.||+|.+. +++. ||+|.+.... ....+.+.+|+.++++++||||+++++++.+.. .+
T Consensus 14 ~~~y~~~~~lG~G~~g~Vy~~~~~~~~~~~~~kv~iK~~~~~~~~~~~~~~~~E~~~l~~l~hp~iv~~~~~~~~~~-~~ 92 (327)
T 3lzb_A 14 ETEFKKIKVLGSGAFGTVYKGLWIPEGEKVKIPVAIKELREATSPKANKEILDEAYVMASVDNPHVCRLLGICLTST-VQ 92 (327)
T ss_dssp TTTEEEEEEEEECSSEEEEEEEECCTTCSCCEEEEEEEECCCSSCCCHHHHHHHHHHHTTCCBTTBCCCCEEEESSS-EE
T ss_pred HhHceEEEEeeeCCCeEEEEEEEcCCCceEEEEEEEEeeccccCHHHHHHHHHHHHHHHhCCCCCeeEEEEEEecCC-ce
Confidence 368999999999999999999964 5554 4777664332 334567889999999999999999999998765 78
Q ss_pred EEEEccCCCCHHHHHhhCCCCCCHHHHHHHHHHHHHHHHHHhhcCCCCCeEecCCCCCCeeeCCCCcEEEeeeccccccC
Q 005040 500 LVLEFMPNGSLEKWLYSHNYFLDILQRLNIMIDVGSALEYLHHCHSSAPIIHCDLKPTNILLDENMVAHVSDFGISKLLG 579 (717)
Q Consensus 500 lv~e~~~~g~L~~~l~~~~~~~~~~~~~~i~~~i~~~l~~LH~~~~~~~ivH~dlk~~Nill~~~~~~kl~Dfgl~~~~~ 579 (717)
+|+||+.+|+|.+++......+++..+..++.|++.||.||| +.+|+||||||+||+++.++.+||+|||+++...
T Consensus 93 ~v~~~~~~g~L~~~l~~~~~~~~~~~~~~i~~qi~~aL~~LH----~~~ivH~Dikp~NIl~~~~~~~kL~DfG~a~~~~ 168 (327)
T 3lzb_A 93 LITQLMPFGCLLDYVREHKDNIGSQYLLNWCVQIAKGMNYLE----DRRLVHRDLAARNVLVKTPQHVKITDFGLAKLLG 168 (327)
T ss_dssp EEECCCSSCBHHHHHHHTTTCCCHHHHHHHHHHHHHHHHHHH----HTTCCCSCCCGGGEEEEETTEEEECCTTC-----
T ss_pred EEEEecCCCcHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHh----hCCCcCCCCCHHHEEEcCCCCEEEccCcceeEcc
Confidence 999999999999999987777999999999999999999999 6789999999999999999999999999998775
Q ss_pred CCCCceeeeccccCccccCCCccCCCCcCcccchhhHHHHHHHHHh-CCCCCCccccCcchHHHHHHhhCCCchhhhccc
Q 005040 580 EGEDSVIQTMTMATIGYMAPEYGSEGIVSTKCDVYSYGVLLMETFT-EKKPTDEMFTGEMSLRRWVKESLPHRLTEVVDA 658 (717)
Q Consensus 580 ~~~~~~~~~~~~~t~~y~aPE~~~~~~~~~~~Dvws~G~il~el~t-g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 658 (717)
............+|+.|+|||.+.+..++.++||||||+++|||++ |+.||...... .....+......
T Consensus 169 ~~~~~~~~~~~~~t~~y~aPE~~~~~~~~~~~Di~slG~il~ell~~g~~p~~~~~~~--~~~~~~~~~~~~-------- 238 (327)
T 3lzb_A 169 AEEKEYHAEGGKVPIKWMALESILHRIYTHQSDVWSYGVTVWELMTFGSKPYDGIPAS--EISSILEKGERL-------- 238 (327)
T ss_dssp -----------CCCGGGSCHHHHHHCCCCHHHHHHHHHHHHHHHHTTSCCTTTTCCGG--GHHHHHHTTCCC--------
T ss_pred CccccccccCCCccccccCHHHHcCCCCChHHHHHHHHHHHHHHHHCCCCCCCCCCHH--HHHHHHHcCCCC--------
Confidence 4443333344557889999999999999999999999999999999 99999764322 222222211100
Q ss_pred cchhhhhhhhhhHHHHHHHHHHHhhccCCCCCCCCCHHHHHHHHHHhHH
Q 005040 659 NLVREEQAFSDKMDCLFSIMDLALDCCMDTPHKRIHMTDAAAKLRKIKA 707 (717)
Q Consensus 659 ~~~~~~~~~~~~~~~~~~l~~li~~cl~~~P~~Rpt~~ev~~~L~~~~~ 707 (717)
+....++.++.+++.+||+.||++|||+.|+++.|+++.+
T Consensus 239 ---------~~~~~~~~~l~~li~~~l~~dp~~Rps~~ell~~L~~~~~ 278 (327)
T 3lzb_A 239 ---------PQPPICTIDVYMIMRKCWMIDADSRPKFRELIIEFSKMAR 278 (327)
T ss_dssp ---------CCCTTBCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHHT
T ss_pred ---------CCCccCCHHHHHHHHHHcCCChhHCcCHHHHHHHHHHHHh
Confidence 1112344568899999999999999999999999999864
No 108
>1rdq_E PKA C-alpha, CAMP-dependent protein kinase, alpha-catalytic SU; CAMP-dependent protein kinase,catalytic mechanism, ATP hydro two nucleotide states; HET: TPO SEP ADP ATP; 1.26A {Mus musculus} SCOP: d.144.1.7 PDB: 2erz_E* 3fjq_E* 1bkx_A* 1atp_E* 1fmo_E* 1j3h_A* 1jlu_E* 1bx6_A* 1re8_A* 1rej_A* 1rek_A* 2cpk_E* 2qcs_A* 2qvs_E* 1l3r_E* 3idb_A* 3idc_A* 3o7l_D* 3ow3_A* 3tnp_C* ...
Probab=100.00 E-value=1.1e-40 Score=350.16 Aligned_cols=244 Identities=24% Similarity=0.255 Sum_probs=203.9
Q ss_pred ccCCccccccccccEEEEEEEec-CCCeEEEEEechhh---HHHHHHHHHHHHHHHhcCCCceeeEeeeeecCCeeEEEE
Q 005040 427 DEFNECNLLGTGGFGSVYKGTLS-DGTNVAIKIFNLQL---ERAFRSFDSECEILRNVRHRNLLKILGSCSNLDFKALVL 502 (717)
Q Consensus 427 ~~~~~~~~lg~G~~g~V~~~~~~-~~~~vavK~~~~~~---~~~~~~~~~e~~~l~~l~hpniv~~~~~~~~~~~~~lv~ 502 (717)
++|+..+.||+|+||.||+|+.. +|+.||+|++.... ....+.+.+|+++++.++||||+++++++.+.+..|+||
T Consensus 41 ~~y~~~~~lG~G~~g~V~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~E~~~l~~l~hp~iv~~~~~~~~~~~~~lv~ 120 (350)
T 1rdq_E 41 DQFDRIKTLGTGSFGRVMLVKHKESGNHYAMKILDKQKVVKLKQIEHTLNEKRILQAVNFPFLVKLEFSFKDNSNLYMVM 120 (350)
T ss_dssp GGEEEEEEEEECSSCEEEEEEETTTCCEEEEEEEEHHHHHHTTCHHHHHHHHHHHTTCCCTTBCCEEEEEECSSEEEEEE
T ss_pred HHCEEEEEeecCcCcEEEEEEECCCCCEEEEEEEEhHHhccHHHHHHHHHHHHHHHhCCCCCCCeEEEEEEcCCEEEEEE
Confidence 68999999999999999999976 79999999997653 234467888999999999999999999999999999999
Q ss_pred EccCCCCHHHHHhhCCCCCCHHHHHHHHHHHHHHHHHHhhcCCCCCeEecCCCCCCeeeCCCCcEEEeeeccccccCCCC
Q 005040 503 EFMPNGSLEKWLYSHNYFLDILQRLNIMIDVGSALEYLHHCHSSAPIIHCDLKPTNILLDENMVAHVSDFGISKLLGEGE 582 (717)
Q Consensus 503 e~~~~g~L~~~l~~~~~~~~~~~~~~i~~~i~~~l~~LH~~~~~~~ivH~dlk~~Nill~~~~~~kl~Dfgl~~~~~~~~ 582 (717)
||+++|+|.+++...+ .+++..+..++.|++.||.||| +.+|+||||||+||+++.++.+||+|||+++.....
T Consensus 121 e~~~gg~L~~~l~~~~-~~~~~~~~~~~~qi~~aL~~LH----~~~ivHrDlkp~NIll~~~g~~kL~DFg~a~~~~~~- 194 (350)
T 1rdq_E 121 EYVAGGEMFSHLRRIG-RFSEPHARFYAAQIVLTFEYLH----SLDLIYRDLKPENLLIDQQGYIQVTDFGFAKRVKGR- 194 (350)
T ss_dssp ECCTTCBHHHHHHHHC-CCCHHHHHHHHHHHHHHHHHHH----HTTEECCCCSGGGEEECTTSCEEECCCTTCEECSSC-
T ss_pred cCCCCCcHHHHHHHcC-CCCHHHHHHHHHHHHHHHHHHH----HCCcccccCccceEEECCCCCEEEcccccceeccCC-
Confidence 9999999999998754 3899999999999999999999 678999999999999999999999999999876432
Q ss_pred CceeeeccccCccccCCCccCCCCcCcccchhhHHHHHHHHHhCCCCCCccccCcchHHHHHHhhCCCchhhhccccchh
Q 005040 583 DSVIQTMTMATIGYMAPEYGSEGIVSTKCDVYSYGVLLMETFTEKKPTDEMFTGEMSLRRWVKESLPHRLTEVVDANLVR 662 (717)
Q Consensus 583 ~~~~~~~~~~t~~y~aPE~~~~~~~~~~~Dvws~G~il~el~tg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 662 (717)
....+||+.|+|||++.+..++.++||||+||++|||++|+.||..... ......+... ..
T Consensus 195 ----~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~ell~g~~Pf~~~~~--~~~~~~i~~~-----------~~-- 255 (350)
T 1rdq_E 195 ----TWTLCGTPEALAPEIILSKGYNKAVDWWALGVLIYEMAAGYPPFFADQP--IQIYEKIVSG-----------KV-- 255 (350)
T ss_dssp ----BCCCEECGGGCCHHHHTTCCBCTHHHHHHHHHHHHHHHHSSCSSCCSSH--HHHHHHHHHC-----------CC--
T ss_pred ----cccccCCccccCHHHhcCCCCCCcCCEecccHhHhHHhhCCCCCCCCCH--HHHHHHHHcC-----------CC--
Confidence 1234689999999999999999999999999999999999999975321 1111111110 00
Q ss_pred hhhhhhhhHHHHHHHHHHHhhccCCCCCCCCC-----HHHHHH
Q 005040 663 EEQAFSDKMDCLFSIMDLALDCCMDTPHKRIH-----MTDAAA 700 (717)
Q Consensus 663 ~~~~~~~~~~~~~~l~~li~~cl~~~P~~Rpt-----~~ev~~ 700 (717)
..+..++.++.+++.+||+.||++||+ ++|+++
T Consensus 256 -----~~p~~~~~~~~~li~~lL~~dp~~R~~~~~~~~~ei~~ 293 (350)
T 1rdq_E 256 -----RFPSHFSSDLKDLLRNLLQVDLTKRFGNLKNGVNDIKN 293 (350)
T ss_dssp -----CCCTTCCHHHHHHHHHHSCSCTTTCTTSSTTTTHHHHT
T ss_pred -----CCCCCCCHHHHHHHHHHhhcCHHhccCCccCCHHHHHh
Confidence 001123466889999999999999998 777764
No 109
>2w4o_A Calcium/calmodulin-dependent protein kinase type IV; calmodulin-binding, nucleotide-binding, serine/threonine-protein kinase, ATP-binding; HET: DKI; 2.17A {Homo sapiens}
Probab=100.00 E-value=9e-41 Score=351.62 Aligned_cols=251 Identities=22% Similarity=0.308 Sum_probs=190.4
Q ss_pred HhccCCccccccccccEEEEEEEec-CCCeEEEEEechhhHHHHHHHHHHHHHHHhcCCCceeeEeeeeecCCeeEEEEE
Q 005040 425 ATDEFNECNLLGTGGFGSVYKGTLS-DGTNVAIKIFNLQLERAFRSFDSECEILRNVRHRNLLKILGSCSNLDFKALVLE 503 (717)
Q Consensus 425 ~~~~~~~~~~lg~G~~g~V~~~~~~-~~~~vavK~~~~~~~~~~~~~~~e~~~l~~l~hpniv~~~~~~~~~~~~~lv~e 503 (717)
..++|++.+.||+|+||.||+|... +++.||||++.... ..+.+.+|++++++++||||+++++++.+.+..++|||
T Consensus 51 ~~~~y~~~~~lG~G~~g~Vy~~~~~~~~~~vavK~~~~~~--~~~~~~~E~~~l~~l~h~niv~~~~~~~~~~~~~lv~e 128 (349)
T 2w4o_A 51 LSDFFEVESELGRGATSIVYRCKQKGTQKPYALKVLKKTV--DKKIVRTEIGVLLRLSHPNIIKLKEIFETPTEISLVLE 128 (349)
T ss_dssp GGGTEEEEEEEEECSSEEEEEEEETTTCCEEEEEEEEC------------CHHHHHCCCTTBCCEEEEEECSSEEEEEEC
T ss_pred ccCcEEEeeEEeeCCCEEEEEEEECCCCcEEEEEEeccch--hHHHHHHHHHHHHhCCCCCCcceeeeEecCCeEEEEEE
Confidence 3467999999999999999999986 68899999997553 23567889999999999999999999999999999999
Q ss_pred ccCCCCHHHHHhhCCCCCCHHHHHHHHHHHHHHHHHHhhcCCCCCeEecCCCCCCeeeCC---CCcEEEeeeccccccCC
Q 005040 504 FMPNGSLEKWLYSHNYFLDILQRLNIMIDVGSALEYLHHCHSSAPIIHCDLKPTNILLDE---NMVAHVSDFGISKLLGE 580 (717)
Q Consensus 504 ~~~~g~L~~~l~~~~~~~~~~~~~~i~~~i~~~l~~LH~~~~~~~ivH~dlk~~Nill~~---~~~~kl~Dfgl~~~~~~ 580 (717)
|+++|+|.+++...+ .+++..+..++.|++.||.||| +.+|+||||||+||+++. ++.+||+|||+++....
T Consensus 129 ~~~~~~L~~~l~~~~-~~~~~~~~~i~~qi~~~L~~LH----~~~ivH~Dikp~NIll~~~~~~~~~kl~Dfg~a~~~~~ 203 (349)
T 2w4o_A 129 LVTGGELFDRIVEKG-YYSERDAADAVKQILEAVAYLH----ENGIVHRDLKPENLLYATPAPDAPLKIADFGLSKIVEH 203 (349)
T ss_dssp CCCSCBHHHHHTTCS-SCCHHHHHHHHHHHHHHHHHHH----HTTCCCCCCCGGGEEESSSSTTCCEEECCCC-------
T ss_pred eCCCCCHHHHHHhcC-CCCHHHHHHHHHHHHHHHHHHH----HCCeEecCCCcccEEEecCCCCCCEEEccCccccccCc
Confidence 999999999998654 4899999999999999999999 678999999999999975 88999999999987643
Q ss_pred CCCceeeeccccCccccCCCccCCCCcCcccchhhHHHHHHHHHhCCCCCCccccCcchHHHHHHhhCCCchhhhccccc
Q 005040 581 GEDSVIQTMTMATIGYMAPEYGSEGIVSTKCDVYSYGVLLMETFTEKKPTDEMFTGEMSLRRWVKESLPHRLTEVVDANL 660 (717)
Q Consensus 581 ~~~~~~~~~~~~t~~y~aPE~~~~~~~~~~~Dvws~G~il~el~tg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 660 (717)
.. ......||+.|+|||++.+..++.++|||||||++|||++|+.||.................... ..
T Consensus 204 ~~---~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~ell~g~~pf~~~~~~~~~~~~i~~~~~~~-----~~--- 272 (349)
T 2w4o_A 204 QV---LMKTVCGTPGYCAPEILRGCAYGPEVDMWSVGIITYILLCGFEPFYDERGDQFMFRRILNCEYYF-----IS--- 272 (349)
T ss_dssp ------------CGGGSCHHHHTTCCCCTHHHHHHHHHHHHHHHHSSCTTCCTTCHHHHHHHHHTTCCCC-----CT---
T ss_pred cc---ccccccCCCCccCHHHhcCCCCCcccchHHHHHHHHHHHhCCCCCCCCcccHHHHHHHHhCCCcc-----CC---
Confidence 22 12345689999999999999999999999999999999999999965332221112111111000 00
Q ss_pred hhhhhhhhhhHHHHHHHHHHHhhccCCCCCCCCCHHHHHH
Q 005040 661 VREEQAFSDKMDCLFSIMDLALDCCMDTPHKRIHMTDAAA 700 (717)
Q Consensus 661 ~~~~~~~~~~~~~~~~l~~li~~cl~~~P~~Rpt~~ev~~ 700 (717)
+...+++.++.+++.+||+.||++|||+.|+++
T Consensus 273 -------~~~~~~~~~~~~li~~~L~~dP~~Rpt~~e~l~ 305 (349)
T 2w4o_A 273 -------PWWDEVSLNAKDLVRKLIVLDPKKRLTTFQALQ 305 (349)
T ss_dssp -------TTTTTSCHHHHHHHHTTSCSSGGGSCCHHHHHH
T ss_pred -------chhhhCCHHHHHHHHHHccCChhhCcCHHHHhc
Confidence 001134566889999999999999999999886
No 110
>1u59_A Tyrosine-protein kinase ZAP-70; transferase; HET: STU; 2.30A {Homo sapiens} SCOP: d.144.1.7
Probab=100.00 E-value=1.9e-40 Score=339.97 Aligned_cols=263 Identities=24% Similarity=0.403 Sum_probs=213.7
Q ss_pred ccCCccc-cccccccEEEEEEEec---CCCeEEEEEechhh-HHHHHHHHHHHHHHHhcCCCceeeEeeeeecCCeeEEE
Q 005040 427 DEFNECN-LLGTGGFGSVYKGTLS---DGTNVAIKIFNLQL-ERAFRSFDSECEILRNVRHRNLLKILGSCSNLDFKALV 501 (717)
Q Consensus 427 ~~~~~~~-~lg~G~~g~V~~~~~~---~~~~vavK~~~~~~-~~~~~~~~~e~~~l~~l~hpniv~~~~~~~~~~~~~lv 501 (717)
++|.+.. .||+|+||.||+|.+. +++.||+|+++... ....+.+.+|++++++++||||+++++++. .+..++|
T Consensus 9 ~~~~i~~~~lg~G~~g~Vy~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~h~~i~~~~~~~~-~~~~~lv 87 (287)
T 1u59_A 9 DNLLIADIELGCGNFGSVRQGVYRMRKKQIDVAIKVLKQGTEKADTEEMMREAQIMHQLDNPYIVRLIGVCQ-AEALMLV 87 (287)
T ss_dssp GGEEEEEEEEECCTTEEEEEEEEC---CCEEEEEEEECSSCCHHHHHHHHHHHHHHHHCCCTTBCCEEEEEE-SSSEEEE
T ss_pred HHhhhhhccccccCceeEEEeEeccCCCcceEEEEecCCccchhHHHHHHHHHHHHHhCCCCCEeEEEEEec-CCCcEEE
Confidence 5666666 8999999999999853 67889999997643 345577899999999999999999999994 5568999
Q ss_pred EEccCCCCHHHHHhhCCCCCCHHHHHHHHHHHHHHHHHHhhcCCCCCeEecCCCCCCeeeCCCCcEEEeeeccccccCCC
Q 005040 502 LEFMPNGSLEKWLYSHNYFLDILQRLNIMIDVGSALEYLHHCHSSAPIIHCDLKPTNILLDENMVAHVSDFGISKLLGEG 581 (717)
Q Consensus 502 ~e~~~~g~L~~~l~~~~~~~~~~~~~~i~~~i~~~l~~LH~~~~~~~ivH~dlk~~Nill~~~~~~kl~Dfgl~~~~~~~ 581 (717)
|||+++++|.+++......+++..+..++.|+++||.||| +.+|+||||||+||+++.++.+||+|||++......
T Consensus 88 ~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~qi~~~l~~lH----~~~i~H~dlkp~Nili~~~~~~kl~Dfg~~~~~~~~ 163 (287)
T 1u59_A 88 MEMAGGGPLHKFLVGKREEIPVSNVAELLHQVSMGMKYLE----EKNFVHRDLAARNVLLVNRHYAKISDFGLSKALGAD 163 (287)
T ss_dssp EECCTTEEHHHHHTTCTTTSCHHHHHHHHHHHHHHHHHHH----HTTEECCCCSGGGEEEEETTEEEECCCTTCEECTTC
T ss_pred EEeCCCCCHHHHHHhCCccCCHHHHHHHHHHHHHHHHHHH----HCCEeeCCCchheEEEcCCCCEEECcccceeeeccC
Confidence 9999999999999877667999999999999999999999 678999999999999999999999999999877543
Q ss_pred CCce-eeeccccCccccCCCccCCCCcCcccchhhHHHHHHHHHh-CCCCCCccccCcchHHHHHHhhCCCchhhhcccc
Q 005040 582 EDSV-IQTMTMATIGYMAPEYGSEGIVSTKCDVYSYGVLLMETFT-EKKPTDEMFTGEMSLRRWVKESLPHRLTEVVDAN 659 (717)
Q Consensus 582 ~~~~-~~~~~~~t~~y~aPE~~~~~~~~~~~Dvws~G~il~el~t-g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 659 (717)
.... ......+|+.|+|||++.+..++.++||||||+++|||++ |+.||..... ......+......
T Consensus 164 ~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~ellt~g~~p~~~~~~--~~~~~~i~~~~~~--------- 232 (287)
T 1u59_A 164 DSYYTARSAGKWPLKWYAPECINFRKFSSRSDVWSYGVTMWEALSYGQKPYKKMKG--PEVMAFIEQGKRM--------- 232 (287)
T ss_dssp SCEECCCCSSCCCGGGCCHHHHHHCEECHHHHHHHHHHHHHHHHTTSCCTTTTCCT--HHHHHHHHTTCCC---------
T ss_pred cceeeccccccccccccCHHHhccCCCCchhhHHHHHHHHHHHHcCCCCCcccCCH--HHHHHHHhcCCcC---------
Confidence 3221 1223356889999999988889999999999999999999 9999976322 1222222211100
Q ss_pred chhhhhhhhhhHHHHHHHHHHHhhccCCCCCCCCCHHHHHHHHHHhHHhhccch
Q 005040 660 LVREEQAFSDKMDCLFSIMDLALDCCMDTPHKRIHMTDAAAKLRKIKAKFLDDV 713 (717)
Q Consensus 660 ~~~~~~~~~~~~~~~~~l~~li~~cl~~~P~~Rpt~~ev~~~L~~~~~~~~~~~ 713 (717)
..+..++.++.+++.+||+.||++||++.|+++.|+++........
T Consensus 233 --------~~~~~~~~~l~~li~~~l~~~p~~Rps~~~l~~~l~~~~~~~~~~~ 278 (287)
T 1u59_A 233 --------ECPPECPPELYALMSDCWIYKWEDRPDFLTVEQRMRACYYSLASKV 278 (287)
T ss_dssp --------CCCTTCCHHHHHHHHHTTCSSGGGSCCHHHHHHHHHHHHHHHHTTC
T ss_pred --------CCCCCcCHHHHHHHHHHcCCChhhCcCHHHHHHHHHHHHHhcCCcc
Confidence 0112345678899999999999999999999999999977655443
No 111
>2i1m_A Macrophage colony-stimulating factor 1 receptor; kinase domain, kinase inhibitor complex, transferase; HET: 5CN; 1.80A {Homo sapiens} PDB: 3bea_A* 3lcd_A* 2i0y_A* 2i0v_A* 3dpk_A* 3krj_A* 3krl_A* 2ogv_A 3lco_A*
Probab=100.00 E-value=1.4e-40 Score=348.82 Aligned_cols=264 Identities=23% Similarity=0.369 Sum_probs=214.6
Q ss_pred HHhccCCccccccccccEEEEEEEec-CC-----CeEEEEEechhh-HHHHHHHHHHHHHHHhc-CCCceeeEeeeeecC
Q 005040 424 RATDEFNECNLLGTGGFGSVYKGTLS-DG-----TNVAIKIFNLQL-ERAFRSFDSECEILRNV-RHRNLLKILGSCSNL 495 (717)
Q Consensus 424 ~~~~~~~~~~~lg~G~~g~V~~~~~~-~~-----~~vavK~~~~~~-~~~~~~~~~e~~~l~~l-~hpniv~~~~~~~~~ 495 (717)
...++|+..+.||+|+||.||+|... ++ ..||+|++.... ....+.+.+|+++++++ +||||+++++++.+.
T Consensus 43 ~~~~~~~~~~~lG~G~~g~Vy~~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~~h~~iv~~~~~~~~~ 122 (333)
T 2i1m_A 43 FPRNNLQFGKTLGAGAFGKVVEATAFGLGKEDAVLKVAVKMLKSTAHADEKEALMSELKIMSHLGQHENIVNLLGACTHG 122 (333)
T ss_dssp CCTTSEEEEEEEEECSSEEEEEEEETTCSSSCCCCEEEEEEECTTCCHHHHHHHHHHHHHHHHHCCCTTBCCEEEEECSS
T ss_pred CCHHHceeeeEeccCCCcceEEEEecCCCcccchhHHHHHhcccccChHHHHHHHHHHHHHHhhcCCCCeeeEEEEEecC
Confidence 34578999999999999999999964 23 479999997653 33456788999999999 899999999999999
Q ss_pred CeeEEEEEccCCCCHHHHHhhC-------------CCCCCHHHHHHHHHHHHHHHHHHhhcCCCCCeEecCCCCCCeeeC
Q 005040 496 DFKALVLEFMPNGSLEKWLYSH-------------NYFLDILQRLNIMIDVGSALEYLHHCHSSAPIIHCDLKPTNILLD 562 (717)
Q Consensus 496 ~~~~lv~e~~~~g~L~~~l~~~-------------~~~~~~~~~~~i~~~i~~~l~~LH~~~~~~~ivH~dlk~~Nill~ 562 (717)
+..++||||+++|+|.+++... ...+++..+..++.|++.||.||| +.+|+||||||+||+++
T Consensus 123 ~~~~lv~e~~~~g~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~qi~~~l~~lH----~~~ivH~Dlkp~NIl~~ 198 (333)
T 2i1m_A 123 GPVLVITEYCCYGDLLNFLRRKSRVLETDPAFAIANSTASTRDLLHFSSQVAQGMAFLA----SKNCIHRDVAARNVLLT 198 (333)
T ss_dssp SSCEEEEECCTTEEHHHHHHHHHHHHSCC-------CCCCHHHHHHHHHHHHHHHHHHH----HTTEECSCCSGGGCEEE
T ss_pred CceEEEEecCCCCcHHHHHHHhcccccccccccccccccCHHHHHHHHHHHHHHHHHHh----cCCcccCCcccceEEEC
Confidence 9999999999999999999753 234799999999999999999999 67899999999999999
Q ss_pred CCCcEEEeeeccccccCCCCCceeeeccccCccccCCCccCCCCcCcccchhhHHHHHHHHHh-CCCCCCccccCcchHH
Q 005040 563 ENMVAHVSDFGISKLLGEGEDSVIQTMTMATIGYMAPEYGSEGIVSTKCDVYSYGVLLMETFT-EKKPTDEMFTGEMSLR 641 (717)
Q Consensus 563 ~~~~~kl~Dfgl~~~~~~~~~~~~~~~~~~t~~y~aPE~~~~~~~~~~~Dvws~G~il~el~t-g~~p~~~~~~~~~~~~ 641 (717)
.++.+||+|||++................+|+.|+|||.+.+..++.++||||||+++|||++ |..||...... ....
T Consensus 199 ~~~~~kl~Dfg~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~el~t~g~~p~~~~~~~-~~~~ 277 (333)
T 2i1m_A 199 NGHVAKIGDFGLARDIMNDSNYIVKGNARLPVKWMAPESIFDCVYTVQSDVWSYGILLWEIFSLGLNPYPGILVN-SKFY 277 (333)
T ss_dssp GGGEEEBCCCGGGCCGGGCTTSEECSSCEECGGGSCHHHHHHCCCCHHHHHHHHHHHHHHHTTTSCCSSTTCCSS-HHHH
T ss_pred CCCeEEECccccccccccccceeecCCCCCCccccCHHHhccCCCChHHHHHHHHHHHHHHHcCCCCCCcccchh-HHHH
Confidence 999999999999987654443333444567889999999888889999999999999999999 99999764322 1222
Q ss_pred HHHHhhCCCchhhhccccchhhhhhhhhhHHHHHHHHHHHhhccCCCCCCCCCHHHHHHHHHHhHHhh
Q 005040 642 RWVKESLPHRLTEVVDANLVREEQAFSDKMDCLFSIMDLALDCCMDTPHKRIHMTDAAAKLRKIKAKF 709 (717)
Q Consensus 642 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~cl~~~P~~Rpt~~ev~~~L~~~~~~~ 709 (717)
.......... .+..++..+.+++.+||+.||++|||+.|+++.|+++....
T Consensus 278 ~~~~~~~~~~-----------------~~~~~~~~l~~li~~~l~~~p~~Rps~~~l~~~L~~~~~~~ 328 (333)
T 2i1m_A 278 KLVKDGYQMA-----------------QPAFAPKNIYSIMQACWALEPTHRPTFQQICSFLQEQAQED 328 (333)
T ss_dssp HHHHHTCCCC-----------------CCTTCCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHHHHH
T ss_pred HHHhcCCCCC-----------------CCCCCCHHHHHHHHHHhccChhhCcCHHHHHHHHHHHHHhh
Confidence 2222211110 01123456889999999999999999999999999986654
No 112
>3c1x_A Hepatocyte growth factor receptor; receptor tyrosine kinase, signal transduction, GRB2, SHC, ATP-binding, glycoprotein, membrane; HET: CKK; 2.17A {Homo sapiens} SCOP: d.144.1.7
Probab=100.00 E-value=2.7e-41 Score=358.11 Aligned_cols=263 Identities=25% Similarity=0.399 Sum_probs=201.9
Q ss_pred ccCCccccccccccEEEEEEEec--CC--CeEEEEEechhh-HHHHHHHHHHHHHHHhcCCCceeeEeeeee-cCCeeEE
Q 005040 427 DEFNECNLLGTGGFGSVYKGTLS--DG--TNVAIKIFNLQL-ERAFRSFDSECEILRNVRHRNLLKILGSCS-NLDFKAL 500 (717)
Q Consensus 427 ~~~~~~~~lg~G~~g~V~~~~~~--~~--~~vavK~~~~~~-~~~~~~~~~e~~~l~~l~hpniv~~~~~~~-~~~~~~l 500 (717)
..|+..+.||+|+||.||+|.+. ++ ..||+|.+.... ....+.+.+|+.++++++||||+++++++. ..+..++
T Consensus 89 ~~~~~~~~LG~G~fg~Vy~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~il~~l~hpnIv~~~~~~~~~~~~~~l 168 (373)
T 3c1x_A 89 LIVHFNEVIGRGHFGCVYHGTLLDNDGKKIHCAVKSLNRITDIGEVSQFLTEGIIMKDFSHPNVLSLLGICLRSEGSPLV 168 (373)
T ss_dssp EEEEEEEEEECCSSSEEEEEEEEETTTEEEEEEEEECCSCSCSHHHHHHHHHHTTSTTCCCTTBCCCCEEECCCSSCCEE
T ss_pred ceeecCcEeeeCCCeEEEEEEEECCCCcEEEEEEEEcCCCCCHHHHHHHHHHHHHHHhCCCCCcceEEEEEEcCCCCeEE
Confidence 45677789999999999999864 22 358999886433 345577899999999999999999999864 4567899
Q ss_pred EEEccCCCCHHHHHhhCCCCCCHHHHHHHHHHHHHHHHHHhhcCCCCCeEecCCCCCCeeeCCCCcEEEeeeccccccCC
Q 005040 501 VLEFMPNGSLEKWLYSHNYFLDILQRLNIMIDVGSALEYLHHCHSSAPIIHCDLKPTNILLDENMVAHVSDFGISKLLGE 580 (717)
Q Consensus 501 v~e~~~~g~L~~~l~~~~~~~~~~~~~~i~~~i~~~l~~LH~~~~~~~ivH~dlk~~Nill~~~~~~kl~Dfgl~~~~~~ 580 (717)
||||+++|+|.++++.....+++..+..++.|+++||+||| +.+|+||||||+||+++.++.+||+|||+++....
T Consensus 169 v~e~~~~g~L~~~l~~~~~~~~~~~~~~i~~qi~~aL~~LH----~~~ivHrDlkp~NIll~~~~~~kL~DFG~a~~~~~ 244 (373)
T 3c1x_A 169 VLPYMKHGDLRNFIRNETHNPTVKDLIGFGLQVAKGMKFLA----SKKFVHRDLAARNCMLDEKFTVKVADFGLARDMYD 244 (373)
T ss_dssp EEECCTTCBHHHHHHCTTCCCBHHHHHHHHHHHHHHHHHHH----HTTCCCSCCCGGGEEECTTCCEEECCC--------
T ss_pred EEECCCCCCHHHHHhhcccCCCHHHHHHHHHHHHHHHHHHH----HCCEecCccchheEEECCCCCEEEeeccccccccc
Confidence 99999999999999987777899999999999999999999 67899999999999999999999999999987643
Q ss_pred CCCc--eeeeccccCccccCCCccCCCCcCcccchhhHHHHHHHHHh-CCCCCCccccCcchHHHHHHhhCCCchhhhcc
Q 005040 581 GEDS--VIQTMTMATIGYMAPEYGSEGIVSTKCDVYSYGVLLMETFT-EKKPTDEMFTGEMSLRRWVKESLPHRLTEVVD 657 (717)
Q Consensus 581 ~~~~--~~~~~~~~t~~y~aPE~~~~~~~~~~~Dvws~G~il~el~t-g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 657 (717)
.... .......+|+.|+|||.+.+..++.++||||||+++|||++ |.+||...... .....+......
T Consensus 245 ~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~DvwSlG~il~ellt~~~~p~~~~~~~--~~~~~~~~~~~~------- 315 (373)
T 3c1x_A 245 KEFDSVHNKTGAKLPVKWMALESLQTQKFTTKSDVWSFGVLLWELMTRGAPPYPDVNTF--DITVYLLQGRRL------- 315 (373)
T ss_dssp -------------CCGGGSCHHHHHHCCCCHHHHHHHHHHHHHHHHTTSCCSCTTSCSS--CHHHHHHTTCCC-------
T ss_pred cccccccccCCCCCcccccChHHhcCCCCCcHHHHHHHHHHHHHHHhCcCCCCCCCCHH--HHHHHHHcCCCC-------
Confidence 3211 12233457889999999988999999999999999999999 67777653222 222222211100
Q ss_pred ccchhhhhhhhhhHHHHHHHHHHHhhccCCCCCCCCCHHHHHHHHHHhHHhhccc
Q 005040 658 ANLVREEQAFSDKMDCLFSIMDLALDCCMDTPHKRIHMTDAAAKLRKIKAKFLDD 712 (717)
Q Consensus 658 ~~~~~~~~~~~~~~~~~~~l~~li~~cl~~~P~~Rpt~~ev~~~L~~~~~~~~~~ 712 (717)
..+..++..+.+++.+||+.||++|||++|+++.|+++...+.++
T Consensus 316 ----------~~p~~~~~~l~~li~~cl~~dp~~RPs~~ell~~L~~i~~~~~~~ 360 (373)
T 3c1x_A 316 ----------LQPEYCPDPLYEVMLKCWHPKAEMRPSFSELVSRISAIFSTFIGE 360 (373)
T ss_dssp ----------CCCTTCCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHHHTCCSC
T ss_pred ----------CCCCCCCHHHHHHHHHHcCCChhhCcCHHHHHHHHHHHHHhcccc
Confidence 011234566889999999999999999999999999998877654
No 113
>2wqm_A Serine/threonine-protein kinase NEK7; ATP-binding, polymorphism, metal-binding, cell cycle kinase, mitosis, cytoplasm, magnesium, transferase; 2.10A {Homo sapiens} PDB: 2wqn_A*
Probab=100.00 E-value=3.1e-40 Score=342.47 Aligned_cols=263 Identities=23% Similarity=0.315 Sum_probs=202.7
Q ss_pred hccCCccccccccccEEEEEEEec-CCCeEEEEEechh---hHHHHHHHHHHHHHHHhcCCCceeeEeeeeecCCeeEEE
Q 005040 426 TDEFNECNLLGTGGFGSVYKGTLS-DGTNVAIKIFNLQ---LERAFRSFDSECEILRNVRHRNLLKILGSCSNLDFKALV 501 (717)
Q Consensus 426 ~~~~~~~~~lg~G~~g~V~~~~~~-~~~~vavK~~~~~---~~~~~~~~~~e~~~l~~l~hpniv~~~~~~~~~~~~~lv 501 (717)
.++|++.+.||+|+||.||+|... +++.||+|++... .....+.+.+|++++++++||||+++++++.+.+..++|
T Consensus 31 ~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~~~~~~lv 110 (310)
T 2wqm_A 31 LANFRIEKKIGRGQFSEVYRAACLLDGVPVALKKVQIFDLMDAKARADCIKEIDLLKQLNHPNVIKYYASFIEDNELNIV 110 (310)
T ss_dssp GGGEEEEEEEECC--CEEEEEEETTTCCEEEEEEECTTSSCCHHHHHHHHHHHHHHHTCCCTTBCCEEEEEEETTEEEEE
T ss_pred ccceEEEEeecCCCCceEEEEEEcCCCceEEEEeeehhhccCHHHHHHHHHHHHHHHhCCCCCEeeEEEEEEcCCcEEEE
Confidence 368999999999999999999964 7999999998753 234556788999999999999999999999999999999
Q ss_pred EEccCCCCHHHHHhh---CCCCCCHHHHHHHHHHHHHHHHHHhhcCCCCCeEecCCCCCCeeeCCCCcEEEeeecccccc
Q 005040 502 LEFMPNGSLEKWLYS---HNYFLDILQRLNIMIDVGSALEYLHHCHSSAPIIHCDLKPTNILLDENMVAHVSDFGISKLL 578 (717)
Q Consensus 502 ~e~~~~g~L~~~l~~---~~~~~~~~~~~~i~~~i~~~l~~LH~~~~~~~ivH~dlk~~Nill~~~~~~kl~Dfgl~~~~ 578 (717)
|||+++|+|.+++.. ....+++..++.++.|++.||.||| +.+++||||||+||+++.++.+||+|||++...
T Consensus 111 ~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~i~~qi~~~l~~LH----~~~i~H~dl~p~NIl~~~~~~~kl~Dfg~~~~~ 186 (310)
T 2wqm_A 111 LELADAGDLSRMIKHFKKQKRLIPERTVWKYFVQLCSALEHMH----SRRVMHRDIKPANVFITATGVVKLGDLGLGRFF 186 (310)
T ss_dssp EECCCSCBHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHHH----HTTCCCCCCCGGGEEECTTSCEEECCC------
T ss_pred EecCCCCCHHHHHHHhcccccCCCHHHHHHHHHHHHHHHHHHh----hCCeeCCCCcHHHEEEcCCCCEEEEeccceeee
Confidence 999999999999974 3456899999999999999999999 678999999999999999999999999999876
Q ss_pred CCCCCceeeeccccCccccCCCccCCCCcCcccchhhHHHHHHHHHhCCCCCCccccCcchHHHHHHhhCCCchhhhccc
Q 005040 579 GEGEDSVIQTMTMATIGYMAPEYGSEGIVSTKCDVYSYGVLLMETFTEKKPTDEMFTGEMSLRRWVKESLPHRLTEVVDA 658 (717)
Q Consensus 579 ~~~~~~~~~~~~~~t~~y~aPE~~~~~~~~~~~Dvws~G~il~el~tg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 658 (717)
..... ......+++.|+|||++.+..++.++||||||+++|||++|+.||.............+... .. +
T Consensus 187 ~~~~~--~~~~~~~~~~y~aPE~~~~~~~~~~~Dv~slG~il~~l~~g~~p~~~~~~~~~~~~~~~~~~---~~-----~ 256 (310)
T 2wqm_A 187 SSKTT--AAHSLVGTPYYMSPERIHENGYNFKSDIWSLGCLLYEMAALQSPFYGDKMNLYSLCKKIEQC---DY-----P 256 (310)
T ss_dssp --------------CCSSCCHHHHTTCCCCHHHHHHHHHHHHHHHHHSSCTTC---CCHHHHHHHHHTT---CS-----C
T ss_pred cCCCc--cccccCCCeeEeChHHhCCCCCCchhhHHHHHHHHHHHHhCCCCCcccchhHHHHHHHhhcc---cC-----C
Confidence 43221 12334689999999999999999999999999999999999999965322221222211110 00 0
Q ss_pred cchhhhhhhhhhHHHHHHHHHHHhhccCCCCCCCCCHHHHHHHHHHhHHhhc
Q 005040 659 NLVREEQAFSDKMDCLFSIMDLALDCCMDTPHKRIHMTDAAAKLRKIKAKFL 710 (717)
Q Consensus 659 ~~~~~~~~~~~~~~~~~~l~~li~~cl~~~P~~Rpt~~ev~~~L~~~~~~~~ 710 (717)
.. ....++.++.+++.+||+.||++|||+.++++.|+++.+...
T Consensus 257 ~~--------~~~~~~~~l~~li~~~l~~dp~~Rps~~~il~~l~~l~~~~~ 300 (310)
T 2wqm_A 257 PL--------PSDHYSEELRQLVNMCINPDPEKRPDVTYVYDVAKRMHACTA 300 (310)
T ss_dssp CC--------CTTTSCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHHHHHC
T ss_pred CC--------cccccCHHHHHHHHHHcCCChhhCCCHHHHHHHHHHHHHhhh
Confidence 00 011344568899999999999999999999999999987654
No 114
>2pmi_A Negative RE, cyclin-dependent protein kinase PHO85; cyclin-dependent kinase, signaling protein,transfera cycle complex; HET: MES AGS; 2.90A {Saccharomyces cerevisiae} PDB: 2pk9_A*
Probab=100.00 E-value=8.5e-41 Score=347.47 Aligned_cols=267 Identities=24% Similarity=0.321 Sum_probs=190.5
Q ss_pred hccCCccccccccccEEEEEEEec-CCCeEEEEEechhh-HHHHHHHHHHHHHHHhcCCCceeeEeeeeecCCeeEEEEE
Q 005040 426 TDEFNECNLLGTGGFGSVYKGTLS-DGTNVAIKIFNLQL-ERAFRSFDSECEILRNVRHRNLLKILGSCSNLDFKALVLE 503 (717)
Q Consensus 426 ~~~~~~~~~lg~G~~g~V~~~~~~-~~~~vavK~~~~~~-~~~~~~~~~e~~~l~~l~hpniv~~~~~~~~~~~~~lv~e 503 (717)
.++|++.+.||+|+||.||+|..+ +++.||+|++.... ....+.+.+|++++++++||||+++++++.+.+..++|||
T Consensus 4 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~E~~~l~~l~hp~iv~~~~~~~~~~~~~lv~e 83 (317)
T 2pmi_A 4 SSQFKQLEKLGNGTYATVYKGLNKTTGVYVALKEVKLDSEEGTPSTAIREISLMKELKHENIVRLYDVIHTENKLTLVFE 83 (317)
T ss_dssp ---------------CEEEEEECSSSCCEEEEEEEECCSTTCSCHHHHHHHHHHTTCCBTTBCCEEEEECCTTEEEEEEE
T ss_pred ccceeEeeEECCCCCEEEEEEEECCCCcEEEEEEeecccccccHHHHHHHHHHHHhcCCCCcceEEEEEEECCeEEEEEE
Confidence 468999999999999999999975 78999999986543 2233567889999999999999999999999999999999
Q ss_pred ccCCCCHHHHHhhC-----CCCCCHHHHHHHHHHHHHHHHHHhhcCCCCCeEecCCCCCCeeeCCCCcEEEeeecccccc
Q 005040 504 FMPNGSLEKWLYSH-----NYFLDILQRLNIMIDVGSALEYLHHCHSSAPIIHCDLKPTNILLDENMVAHVSDFGISKLL 578 (717)
Q Consensus 504 ~~~~g~L~~~l~~~-----~~~~~~~~~~~i~~~i~~~l~~LH~~~~~~~ivH~dlk~~Nill~~~~~~kl~Dfgl~~~~ 578 (717)
|++ |+|.+++... ...+++..+..++.|++.||.||| +.+|+||||||+||+++.++.+||+|||++...
T Consensus 84 ~~~-~~L~~~l~~~~~~~~~~~~~~~~~~~~~~qi~~aL~~lH----~~~ivH~Dlkp~NIl~~~~~~~kl~Dfg~~~~~ 158 (317)
T 2pmi_A 84 FMD-NDLKKYMDSRTVGNTPRGLELNLVKYFQWQLLQGLAFCH----ENKILHRDLKPQNLLINKRGQLKLGDFGLARAF 158 (317)
T ss_dssp CCC-CBHHHHHHHHHSSSCCCCCCHHHHHHHHHHHHHHHHHHH----HTTEECCCCCGGGEEECTTCCEEECCCSSCEET
T ss_pred ecC-CCHHHHHHhccccccccCCCHHHHHHHHHHHHHHHHHHH----HCCeeeCCCChHHeEEcCCCCEEECcCccceec
Confidence 997 6999998743 235899999999999999999999 678999999999999999999999999999876
Q ss_pred CCCCCceeeeccccCccccCCCccCC-CCcCcccchhhHHHHHHHHHhCCCCCCccccCcchHHHHHHhhC-C-Cc-hhh
Q 005040 579 GEGEDSVIQTMTMATIGYMAPEYGSE-GIVSTKCDVYSYGVLLMETFTEKKPTDEMFTGEMSLRRWVKESL-P-HR-LTE 654 (717)
Q Consensus 579 ~~~~~~~~~~~~~~t~~y~aPE~~~~-~~~~~~~Dvws~G~il~el~tg~~p~~~~~~~~~~~~~~~~~~~-~-~~-~~~ 654 (717)
..... ......+|+.|+|||++.+ ..++.++||||+||++|||++|+.||.+.... ........... + .. +..
T Consensus 159 ~~~~~--~~~~~~~t~~y~aPE~~~~~~~~~~~~DiwslG~il~el~~g~~pf~~~~~~-~~~~~i~~~~~~~~~~~~~~ 235 (317)
T 2pmi_A 159 GIPVN--TFSSEVVTLWYRAPDVLMGSRTYSTSIDIWSCGCILAEMITGKPLFPGTNDE-EQLKLIFDIMGTPNESLWPS 235 (317)
T ss_dssp TSCCC--CCCCCCSCCTTCCHHHHTTCCCCCTHHHHHHHHHHHHHHHHSSCSCCCSSHH-HHHHHHHHHHCSCCTTTCGG
T ss_pred CCCcc--cCCCCcccccccCchHhhCCCCCCcHHHHHHHHHHHHHHHhCCCCCCCCChH-HHHHHHHHHhCCCChhHhhh
Confidence 43221 1234468999999998876 46899999999999999999999999764321 11222211111 0 00 000
Q ss_pred hcc-----ccchh-------hhhhhhhhHHHHHHHHHHHhhccCCCCCCCCCHHHHHH
Q 005040 655 VVD-----ANLVR-------EEQAFSDKMDCLFSIMDLALDCCMDTPHKRIHMTDAAA 700 (717)
Q Consensus 655 ~~~-----~~~~~-------~~~~~~~~~~~~~~l~~li~~cl~~~P~~Rpt~~ev~~ 700 (717)
... +.+.. ..........++.++.+++.+||+.||++|||++|+++
T Consensus 236 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~~L~~dP~~Rpt~~e~l~ 293 (317)
T 2pmi_A 236 VTKLPKYNPNIQQRPPRDLRQVLQPHTKEPLDGNLMDFLHGLLQLNPDMRLSAKQALH 293 (317)
T ss_dssp GGGCTTCCTTCCCCCCCCSHHHHGGGCSSCCCHHHHHHHHHHSCSSGGGSCCHHHHTT
T ss_pred hhhhhhcccccccccchhHHHhhcccccccCCHHHHHHHHHHCCCCcccCCCHHHHhC
Confidence 000 00000 00000011134567899999999999999999999876
No 115
>2zmd_A Dual specificity protein kinase TTK; MPS1, T686A, ATP-binding, nucleotide-bindi phosphoprotein, serine/threonine-protein kinase; HET: 537 7PE; 2.88A {Homo sapiens} PDB: 2zmc_A*
Probab=100.00 E-value=2.1e-40 Score=353.92 Aligned_cols=251 Identities=24% Similarity=0.355 Sum_probs=196.8
Q ss_pred ccCCccccccccccEEEEEEEecCCCeEEEEEechhh--HHHHHHHHHHHHHHHhcC--CCceeeEeeeeecCCeeEEEE
Q 005040 427 DEFNECNLLGTGGFGSVYKGTLSDGTNVAIKIFNLQL--ERAFRSFDSECEILRNVR--HRNLLKILGSCSNLDFKALVL 502 (717)
Q Consensus 427 ~~~~~~~~lg~G~~g~V~~~~~~~~~~vavK~~~~~~--~~~~~~~~~e~~~l~~l~--hpniv~~~~~~~~~~~~~lv~ 502 (717)
.+|++.+.||+|+||.||+|...+++.||||++.... ....+.+.+|++++++++ ||||+++++++...+..|+||
T Consensus 56 ~~y~~~~~LG~G~fg~Vy~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~Ei~~l~~l~~~~~~iv~~~~~~~~~~~~~lv~ 135 (390)
T 2zmd_A 56 RIYSILKQIGSGGSSKVFQVLNEKKQIYAIKYVNLEEADNQTLDSYRNEIAYLNKLQQHSDKIIRLYDYEITDQYIYMVM 135 (390)
T ss_dssp EEEEEEEEEECCSSEEEEEEECTTCCEEEEEEEECTTCCHHHHHHHHHHHHHHHHHTTTCTTBCCEEEEEECSSEEEEEE
T ss_pred CceEEEEEEccCCCeEEEEEEcCCCCEEEEEEEecccccHHHHHHHHHHHHHHHHcccCCCeEEEEEEEEecCCEEEEEE
Confidence 5699999999999999999998889999999986543 445577899999999996 599999999999999999999
Q ss_pred EccCCCCHHHHHhhCCCCCCHHHHHHHHHHHHHHHHHHhhcCCCCCeEecCCCCCCeeeCCCCcEEEeeeccccccCCCC
Q 005040 503 EFMPNGSLEKWLYSHNYFLDILQRLNIMIDVGSALEYLHHCHSSAPIIHCDLKPTNILLDENMVAHVSDFGISKLLGEGE 582 (717)
Q Consensus 503 e~~~~g~L~~~l~~~~~~~~~~~~~~i~~~i~~~l~~LH~~~~~~~ivH~dlk~~Nill~~~~~~kl~Dfgl~~~~~~~~ 582 (717)
| +.+++|.+++.... .+++..+..++.||+.||.||| +.+|+||||||+|||++ ++.+||+|||+++.+....
T Consensus 136 E-~~~~~L~~~l~~~~-~~~~~~~~~i~~qi~~aL~~lH----~~~ivHrDlkp~NIll~-~~~~kl~DFG~a~~~~~~~ 208 (390)
T 2zmd_A 136 E-CGNIDLNSWLKKKK-SIDPWERKSYWKNMLEAVHTIH----QHGIVHSDLKPANFLIV-DGMLKLIDFGIANQMQPDT 208 (390)
T ss_dssp E-CCSEEHHHHHHHCS-SCCHHHHHHHHHHHHHHHHHHH----TTTCCCCCCCGGGEEES-SSCEEECCCSSSCCC----
T ss_pred e-cCCCCHHHHHHhcC-CCCHHHHHHHHHHHHHHHHHHH----HCCeeecCCCHHHEEEE-CCeEEEEecCccccccCCC
Confidence 9 56789999998765 4889999999999999999999 78999999999999996 5899999999998775443
Q ss_pred CceeeeccccCccccCCCccCC-----------CCcCcccchhhHHHHHHHHHhCCCCCCccccCcchHHHHHHhhCCCc
Q 005040 583 DSVIQTMTMATIGYMAPEYGSE-----------GIVSTKCDVYSYGVLLMETFTEKKPTDEMFTGEMSLRRWVKESLPHR 651 (717)
Q Consensus 583 ~~~~~~~~~~t~~y~aPE~~~~-----------~~~~~~~Dvws~G~il~el~tg~~p~~~~~~~~~~~~~~~~~~~~~~ 651 (717)
.........||+.|+|||++.+ ..++.++|||||||++|||++|+.||.........+....
T Consensus 209 ~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~~~~~~~~~~~DiwSlGvil~ell~G~~Pf~~~~~~~~~~~~~~------- 281 (390)
T 2zmd_A 209 TSVVKDSQVGAVNYMPPEAIKDMSSSRENGKSKSKISPKSDVWSLGCILYYMTYGKTPFQQIINQISKLHAII------- 281 (390)
T ss_dssp -----CCSCCCGGGCCHHHHHCC------------CCHHHHHHHHHHHHHHHHHSSCTTTTCCCHHHHHHHHH-------
T ss_pred ccccCCCCCcCCCccChHHhhhccccccccccccCCCChhhHHHHHHHHHHHHHCCCcchhhhHHHHHHHHHh-------
Confidence 3333345579999999998754 4689999999999999999999999975322111111111
Q ss_pred hhhhccccchhhhhhhhhhHHHHHHHHHHHhhccCCCCCCCCCHHHHHHH
Q 005040 652 LTEVVDANLVREEQAFSDKMDCLFSIMDLALDCCMDTPHKRIHMTDAAAK 701 (717)
Q Consensus 652 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~cl~~~P~~Rpt~~ev~~~ 701 (717)
+....... +...+.++.+++.+||+.||++|||+.|+++.
T Consensus 282 -----~~~~~~~~-----~~~~~~~~~~li~~~L~~dP~~Rps~~ell~h 321 (390)
T 2zmd_A 282 -----DPNHEIEF-----PDIPEKDLQDVLKCCLKRDPKQRISIPELLAH 321 (390)
T ss_dssp -----CTTSCCCC-----CCCSCHHHHHHHHHHTCSSTTTSCCHHHHHTS
T ss_pred -----CccccCCC-----CccchHHHHHHHHHHcccChhhCCCHHHHhhC
Confidence 11100000 00113457899999999999999999999853
No 116
>3pls_A Macrophage-stimulating protein receptor; protein kinase, CIS autophosphorylation conformation, recept tyrosine kinase, AMP-PNP, unphosphorylated; HET: ANP; 2.24A {Homo sapiens} SCOP: d.144.1.7
Probab=100.00 E-value=2.1e-40 Score=341.71 Aligned_cols=264 Identities=23% Similarity=0.348 Sum_probs=210.5
Q ss_pred ccCCccccccccccEEEEEEEec-CC---CeEEEEEechhh-HHHHHHHHHHHHHHHhcCCCceeeEeeeeecCCee-EE
Q 005040 427 DEFNECNLLGTGGFGSVYKGTLS-DG---TNVAIKIFNLQL-ERAFRSFDSECEILRNVRHRNLLKILGSCSNLDFK-AL 500 (717)
Q Consensus 427 ~~~~~~~~lg~G~~g~V~~~~~~-~~---~~vavK~~~~~~-~~~~~~~~~e~~~l~~l~hpniv~~~~~~~~~~~~-~l 500 (717)
..|...+.||+|+||+||+|.+. ++ ..||+|++.... ....+.+.+|++++++++||||+++++++.+.+.. ++
T Consensus 21 ~~~~~~~~lg~G~~g~Vy~~~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~~~ 100 (298)
T 3pls_A 21 VVTHSDRVIGKGHFGVVYHGEYIDQAQNRIQCAIKSLSRITEMQQVEAFLREGLLMRGLNHPNVLALIGIMLPPEGLPHV 100 (298)
T ss_dssp EEEEEEEEEEEETTEEEEEEEEECSSSCEEEEEEEEETTCCSHHHHHHHHHHHHHHHTCCCTTBCCCCEEECCSSSCCEE
T ss_pred eEEccCceeccCCCceEEEEEEecCCCceeeeeeeeccccccHHHHHHHHHHHHHHHhCCCCCeeeEEEEEecCCCCcEE
Confidence 35566789999999999999853 22 369999987543 34557788999999999999999999999776655 99
Q ss_pred EEEccCCCCHHHHHhhCCCCCCHHHHHHHHHHHHHHHHHHhhcCCCCCeEecCCCCCCeeeCCCCcEEEeeeccccccCC
Q 005040 501 VLEFMPNGSLEKWLYSHNYFLDILQRLNIMIDVGSALEYLHHCHSSAPIIHCDLKPTNILLDENMVAHVSDFGISKLLGE 580 (717)
Q Consensus 501 v~e~~~~g~L~~~l~~~~~~~~~~~~~~i~~~i~~~l~~LH~~~~~~~ivH~dlk~~Nill~~~~~~kl~Dfgl~~~~~~ 580 (717)
||||+.+|+|.+++......+++..+..++.|++.||+||| +.+|+||||||+||+++.++.+||+|||+++....
T Consensus 101 v~e~~~~~~L~~~~~~~~~~~~~~~~~~i~~qi~~~l~~LH----~~~i~H~dikp~Nili~~~~~~kl~Dfg~~~~~~~ 176 (298)
T 3pls_A 101 LLPYMCHGDLLQFIRSPQRNPTVKDLISFGLQVARGMEYLA----EQKFVHRDLAARNCMLDESFTVKVADFGLARDILD 176 (298)
T ss_dssp EECCCTTCBHHHHHHCTTCCCBHHHHHHHHHHHHHHHHHHH----HTTCCCSCCSGGGEEECTTCCEEECCTTSSCTTTT
T ss_pred EEecccCCCHHHHHhccccCCCHHHHHHHHHHHHHHHHHHH----hCCcccCCCCcceEEEcCCCcEEeCcCCCcccccC
Confidence 99999999999999987777899999999999999999999 67899999999999999999999999999986643
Q ss_pred CCC--ceeeeccccCccccCCCccCCCCcCcccchhhHHHHHHHHHhCCCCCCccccCcchHHHHHHhhCCCchhhhccc
Q 005040 581 GED--SVIQTMTMATIGYMAPEYGSEGIVSTKCDVYSYGVLLMETFTEKKPTDEMFTGEMSLRRWVKESLPHRLTEVVDA 658 (717)
Q Consensus 581 ~~~--~~~~~~~~~t~~y~aPE~~~~~~~~~~~Dvws~G~il~el~tg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 658 (717)
... ........+|+.|+|||...+..++.++||||+|+++|||++|+.|+.... ........+.......
T Consensus 177 ~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~g~~~~~~~~-~~~~~~~~~~~~~~~~------- 248 (298)
T 3pls_A 177 REYYSVQQHRHARLPVKWTALESLQTYRFTTKSDVWSFGVLLWELLTRGAPPYRHI-DPFDLTHFLAQGRRLP------- 248 (298)
T ss_dssp GGGGCSCCSSCTTCGGGGSCHHHHTTCCCCHHHHHHHHHHHHHHHHHTSCCTTTTS-CGGGHHHHHHTTCCCC-------
T ss_pred CcccccccCcCCCCCccccChhhhccCCCChhhchhhHHHHHHHHhhCCCCCCccC-CHHHHHHHhhcCCCCC-------
Confidence 221 112234467899999999999999999999999999999999666543322 1222222222211110
Q ss_pred cchhhhhhhhhhHHHHHHHHHHHhhccCCCCCCCCCHHHHHHHHHHhHHhhccc
Q 005040 659 NLVREEQAFSDKMDCLFSIMDLALDCCMDTPHKRIHMTDAAAKLRKIKAKFLDD 712 (717)
Q Consensus 659 ~~~~~~~~~~~~~~~~~~l~~li~~cl~~~P~~Rpt~~ev~~~L~~~~~~~~~~ 712 (717)
....++..+.+++.+||+.||++|||+.++++.|+++..+...+
T Consensus 249 ----------~~~~~~~~l~~li~~~l~~~p~~Rps~~~ll~~l~~~~~~l~~~ 292 (298)
T 3pls_A 249 ----------QPEYCPDSLYQVMQQCWEADPAVRPTFRVLVGEVEQIVSALLGD 292 (298)
T ss_dssp ----------CCTTCCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHHHHCCSC
T ss_pred ----------CCccchHHHHHHHHHHccCChhhCcCHHHHHHHHHHHHHHHhcc
Confidence 11123456889999999999999999999999999998877644
No 117
>2yex_A Serine/threonine-protein kinase CHK1; transferase, cell cycle; HET: YEX; 1.30A {Homo sapiens} PDB: 2x8e_A* 2ydk_A* 2ydj_A* 2yer_A* 2ydi_A* 1nvq_A* 1nvr_A* 1nvs_A* 2wmq_A* 2wmr_A* 2wms_A* 2wmt_A* 2wmu_A* 2wmv_A* 2wmw_A* 2wmx_A* 2x8d_A* 2x8i_A* 2xey_A* 2xez_A* ...
Probab=100.00 E-value=2.6e-40 Score=336.96 Aligned_cols=253 Identities=22% Similarity=0.329 Sum_probs=208.4
Q ss_pred hccCCccccccccccEEEEEEEec-CCCeEEEEEechhh-HHHHHHHHHHHHHHHhcCCCceeeEeeeeecCCeeEEEEE
Q 005040 426 TDEFNECNLLGTGGFGSVYKGTLS-DGTNVAIKIFNLQL-ERAFRSFDSECEILRNVRHRNLLKILGSCSNLDFKALVLE 503 (717)
Q Consensus 426 ~~~~~~~~~lg~G~~g~V~~~~~~-~~~~vavK~~~~~~-~~~~~~~~~e~~~l~~l~hpniv~~~~~~~~~~~~~lv~e 503 (717)
.++|++.+.||+|+||.||+|... +++.||+|++.... ....+.+.+|+.+++.++||||+++++++.+.+..++|||
T Consensus 6 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~lv~e 85 (276)
T 2yex_A 6 VEDWDLVQTLGEGAYGEVQLAVNRVTEEAVAVKIVDMKRAVDCPENIKKEICINKMLNHENVVKFYGHRREGNIQYLFLE 85 (276)
T ss_dssp HHHEEEEEEEEECSSSEEEEEEETTTCCEEEEEEEEGGGCTTHHHHHHHHHHHHHTCCCTTBCCEEEEEEETTEEEEEEE
T ss_pred ecceEEEEEeecCCCcEEEEEEECCCCcEEEEEEeeeccchhhhHHHHHHHHHHHhcCCCCceeeeeEEEcCCEEEEEEE
Confidence 468999999999999999999976 78999999987543 3345678899999999999999999999999999999999
Q ss_pred ccCCCCHHHHHhhCCCCCCHHHHHHHHHHHHHHHHHHhhcCCCCCeEecCCCCCCeeeCCCCcEEEeeeccccccCCCCC
Q 005040 504 FMPNGSLEKWLYSHNYFLDILQRLNIMIDVGSALEYLHHCHSSAPIIHCDLKPTNILLDENMVAHVSDFGISKLLGEGED 583 (717)
Q Consensus 504 ~~~~g~L~~~l~~~~~~~~~~~~~~i~~~i~~~l~~LH~~~~~~~ivH~dlk~~Nill~~~~~~kl~Dfgl~~~~~~~~~ 583 (717)
|+++++|.+++.... .+++..+..++.|++.||.||| +.+|+||||||+||+++.++.+||+|||++........
T Consensus 86 ~~~~~~L~~~l~~~~-~~~~~~~~~~~~~i~~~l~~lH----~~~i~H~dl~p~Nil~~~~~~~kl~dfg~~~~~~~~~~ 160 (276)
T 2yex_A 86 YCSGGELFDRIEPDI-GMPEPDAQRFFHQLMAGVVYLH----GIGITHRDIKPENLLLDERDNLKISDFGLATVFRYNNR 160 (276)
T ss_dssp CCTTEEGGGGSBTTT-BCCHHHHHHHHHHHHHHHHHHH----HTTEECSCCSGGGEEECTTCCEEECCCTTCEECEETTE
T ss_pred ecCCCcHHHHHhhcc-CCCHHHHHHHHHHHHHHHHHHH----hCCeeccCCChHHEEEccCCCEEEeeCCCccccCCCcc
Confidence 999999999987543 4899999999999999999999 67899999999999999999999999999987643332
Q ss_pred ceeeeccccCccccCCCccCCCCc-CcccchhhHHHHHHHHHhCCCCCCccccCcchHHHHHHhhCCCchhhhccccchh
Q 005040 584 SVIQTMTMATIGYMAPEYGSEGIV-STKCDVYSYGVLLMETFTEKKPTDEMFTGEMSLRRWVKESLPHRLTEVVDANLVR 662 (717)
Q Consensus 584 ~~~~~~~~~t~~y~aPE~~~~~~~-~~~~Dvws~G~il~el~tg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 662 (717)
........||+.|+|||...+..+ +.++||||+|+++|||++|+.||............|......
T Consensus 161 ~~~~~~~~~~~~y~aPE~~~~~~~~~~~~Di~slG~il~~l~~g~~p~~~~~~~~~~~~~~~~~~~~------------- 227 (276)
T 2yex_A 161 ERLLNKMCGTLPYVAPELLKRREFHAEPVDVWSCGIVLTAMLAGELPWDQPSDSCQEYSDWKEKKTY------------- 227 (276)
T ss_dssp ECCBCCCCSCGGGCCGGGGTCSSBCHHHHHHHHHHHHHHHHHHSSCCCSCSCTTSHHHHHHHTTCTT-------------
T ss_pred hhcccCCccccCccChHHHhcCCCCCCcchHHHHHHHHHHHHhCCCCCCCCchHHHHHHHhhhcccc-------------
Confidence 222344568999999999887665 789999999999999999999997654433333333321100
Q ss_pred hhhhhhhhHHHHHHHHHHHhhccCCCCCCCCCHHHHHH
Q 005040 663 EEQAFSDKMDCLFSIMDLALDCCMDTPHKRIHMTDAAA 700 (717)
Q Consensus 663 ~~~~~~~~~~~~~~l~~li~~cl~~~P~~Rpt~~ev~~ 700 (717)
......++..+.+++.+||+.||++|||++|+++
T Consensus 228 ----~~~~~~~~~~~~~li~~~l~~~p~~Rps~~~il~ 261 (276)
T 2yex_A 228 ----LNPWKKIDSAPLALLHKILVENPSARITIPDIKK 261 (276)
T ss_dssp ----STTGGGSCHHHHHHHHHHSCSSTTTSCCHHHHTT
T ss_pred ----cCchhhcCHHHHHHHHHHCCCCchhCCCHHHHhc
Confidence 0011133456789999999999999999999876
No 118
>3oz6_A Mitogen-activated protein kinase 1, serine/threon protein kinase; structural genomics consortium, SGC, transferase; 2.37A {Cryptosporidium parvum iowa II}
Probab=100.00 E-value=1.9e-40 Score=355.10 Aligned_cols=270 Identities=26% Similarity=0.305 Sum_probs=194.8
Q ss_pred HHhccCCccccccccccEEEEEEEec-CCCeEEEEEechhh--HHHHHHHHHHHHHHHhcC-CCceeeEeeeeecC--Ce
Q 005040 424 RATDEFNECNLLGTGGFGSVYKGTLS-DGTNVAIKIFNLQL--ERAFRSFDSECEILRNVR-HRNLLKILGSCSNL--DF 497 (717)
Q Consensus 424 ~~~~~~~~~~~lg~G~~g~V~~~~~~-~~~~vavK~~~~~~--~~~~~~~~~e~~~l~~l~-hpniv~~~~~~~~~--~~ 497 (717)
...++|++.+.||+|+||.||+|.+. +++.||||++.... ....+.+.+|+.+++++. ||||+++++++... ..
T Consensus 6 ~~~~~y~~~~~lG~G~~g~V~~~~~~~~~~~vaiK~i~~~~~~~~~~~~~~~E~~~l~~l~~h~niv~l~~~~~~~~~~~ 85 (388)
T 3oz6_A 6 HVLRKYELVKKLGKGAYGIVWKSIDRRTGEVVAVKKIFDAFQNSTDAQRTFREIMILTELSGHENIVNLLNVLRADNDRD 85 (388)
T ss_dssp HHHTTEEEEEC-------CEEEEEETTTCCEEEEEEECC--CCHHHHHHHHHHHHHHHHTTTCTTBCCEEEEEECTTSSC
T ss_pred cccCceEEEEEeeeCCCeEEEEEEECCCCCEEEEEEecccccChHHHHHHHHHHHHHHhccCCCCCCeeeeEEecCCCCE
Confidence 45679999999999999999999875 79999999885432 344566788999999997 99999999998654 37
Q ss_pred eEEEEEccCCCCHHHHHhhCCCCCCHHHHHHHHHHHHHHHHHHhhcCCCCCeEecCCCCCCeeeCCCCcEEEeeeccccc
Q 005040 498 KALVLEFMPNGSLEKWLYSHNYFLDILQRLNIMIDVGSALEYLHHCHSSAPIIHCDLKPTNILLDENMVAHVSDFGISKL 577 (717)
Q Consensus 498 ~~lv~e~~~~g~L~~~l~~~~~~~~~~~~~~i~~~i~~~l~~LH~~~~~~~ivH~dlk~~Nill~~~~~~kl~Dfgl~~~ 577 (717)
.|+||||++ |+|.+++... .+++..+..++.|++.||+||| +.+|+||||||+|||++.++.+||+|||+++.
T Consensus 86 ~~lv~e~~~-~~L~~~~~~~--~~~~~~~~~i~~qi~~~L~~LH----~~~ivHrDlkp~NIll~~~~~~kl~DFG~a~~ 158 (388)
T 3oz6_A 86 VYLVFDYME-TDLHAVIRAN--ILEPVHKQYVVYQLIKVIKYLH----SGGLLHRDMKPSNILLNAECHVKVADFGLSRS 158 (388)
T ss_dssp EEEEEECCS-EEHHHHHHHT--CCCHHHHHHHHHHHHHHHHHHH----HTTEECCCCCGGGEEECTTCCEEECCCTTCEE
T ss_pred EEEEecccC-cCHHHHHHcC--CCCHHHHHHHHHHHHHHHHHHH----hCCEEeCCCCHHHeEEcCCCCEEecCCccccc
Confidence 899999997 6999999874 4899999999999999999999 67899999999999999999999999999987
Q ss_pred cCCCC-------------------CceeeeccccCccccCCCccCC-CCcCcccchhhHHHHHHHHHhCCCCCCccccCc
Q 005040 578 LGEGE-------------------DSVIQTMTMATIGYMAPEYGSE-GIVSTKCDVYSYGVLLMETFTEKKPTDEMFTGE 637 (717)
Q Consensus 578 ~~~~~-------------------~~~~~~~~~~t~~y~aPE~~~~-~~~~~~~Dvws~G~il~el~tg~~p~~~~~~~~ 637 (717)
+.... ........+||++|+|||++.+ ..++.++||||+||++|||++|+.||.+....
T Consensus 159 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~DiwSlG~il~ell~g~~pf~~~~~~- 237 (388)
T 3oz6_A 159 FVNIRRVTNNIPLSINENTENFDDDQPILTDYVATRWYRAPEILLGSTKYTKGIDMWSLGCILGEILCGKPIFPGSSTM- 237 (388)
T ss_dssp SSSCCCCCCCGGGCCC---------------CCCGGGGCCHHHHTTCCCCCTHHHHHHHHHHHHHHHHSSCSCCCSSHH-
T ss_pred ccccccccccccccccccccccccccccccCCcccCCcCCHHHhcCCCCCCChhhHHHHHHHHHHHHhCCCCCCCCCHH-
Confidence 54311 1112234579999999998876 67999999999999999999999999763221
Q ss_pred chHHHHHHhhCCCchhhh--cccc--------c------------------hhhhhhhhhhHHHHHHHHHHHhhccCCCC
Q 005040 638 MSLRRWVKESLPHRLTEV--VDAN--------L------------------VREEQAFSDKMDCLFSIMDLALDCCMDTP 689 (717)
Q Consensus 638 ~~~~~~~~~~~~~~~~~~--~~~~--------~------------------~~~~~~~~~~~~~~~~l~~li~~cl~~~P 689 (717)
..+..............+ +... + ............++.++.+++.+||..||
T Consensus 238 ~~~~~i~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dll~~~L~~dP 317 (388)
T 3oz6_A 238 NQLERIIGVIDFPSNEDVESIQSPFAKTMIESLKEKVEIRQSNKRDIFTKWKNLLLKINPKADCNEEALDLLDKLLQFNP 317 (388)
T ss_dssp HHHHHHHHHHCCCCHHHHHTSCCSSHHHHHHHHHHHCC-----CCCCHHHHHHHHHHHCTTCCCCHHHHHHHHHHCCSSG
T ss_pred HHHHHHHHhcCCCCHHHHHhccCHHHHHHHHhCcccccccCCCHHHhCcchhhhcccccccccCCHHHHHHHHHhhccCc
Confidence 112222211110000000 0000 0 00000000111345678999999999999
Q ss_pred CCCCCHHHHHHH
Q 005040 690 HKRIHMTDAAAK 701 (717)
Q Consensus 690 ~~Rpt~~ev~~~ 701 (717)
++|||++|+++.
T Consensus 318 ~~R~t~~e~l~H 329 (388)
T 3oz6_A 318 NKRISANDALKH 329 (388)
T ss_dssp GGSCCHHHHTTS
T ss_pred ccCCCHHHHhCC
Confidence 999999999865
No 119
>2i0e_A Protein kinase C-beta II; serine/threonine protein kinase, transferase; HET: TPO SEP PDS; 2.60A {Homo sapiens} PDB: 3iw4_A*
Probab=100.00 E-value=1.1e-40 Score=350.04 Aligned_cols=249 Identities=22% Similarity=0.253 Sum_probs=203.1
Q ss_pred HhccCCccccccccccEEEEEEEec-CCCeEEEEEechhh---HHHHHHHHHHHHHHHhc-CCCceeeEeeeeecCCeeE
Q 005040 425 ATDEFNECNLLGTGGFGSVYKGTLS-DGTNVAIKIFNLQL---ERAFRSFDSECEILRNV-RHRNLLKILGSCSNLDFKA 499 (717)
Q Consensus 425 ~~~~~~~~~~lg~G~~g~V~~~~~~-~~~~vavK~~~~~~---~~~~~~~~~e~~~l~~l-~hpniv~~~~~~~~~~~~~ 499 (717)
..++|++.+.||+|+||.||+|+.+ +++.||+|++.... ....+.+..|..+++.+ +||+|+++++++.+.+..|
T Consensus 18 ~~~~y~~~~~lG~G~fg~V~~~~~~~~~~~~AiK~~~~~~~~~~~~~~~~~~E~~~l~~~~~hp~iv~l~~~~~~~~~~~ 97 (353)
T 2i0e_A 18 KLTDFNFLMVLGKGSFGKVMLSERKGTDELYAVKILKKDVVIQDDDVECTMVEKRVLALPGKPPFLTQLHSCFQTMDRLY 97 (353)
T ss_dssp -CTTEEEEEEEEEETTEEEEEEEETTEEEEEEEEEEEHHHHHHTTCHHHHHHHHHHHTCTTCCTTBCCEEEEEECSSEEE
T ss_pred chHHcEEEEEEeeCCCEEEEEEEECCCCCEEEEEEEEHHHhhcchHHHHHHHHHHHHHhcCCCCEEeeEEEEEEcCCEEE
Confidence 4578999999999999999999986 58899999998653 23446678899999988 7999999999999999999
Q ss_pred EEEEccCCCCHHHHHhhCCCCCCHHHHHHHHHHHHHHHHHHhhcCCCCCeEecCCCCCCeeeCCCCcEEEeeeccccccC
Q 005040 500 LVLEFMPNGSLEKWLYSHNYFLDILQRLNIMIDVGSALEYLHHCHSSAPIIHCDLKPTNILLDENMVAHVSDFGISKLLG 579 (717)
Q Consensus 500 lv~e~~~~g~L~~~l~~~~~~~~~~~~~~i~~~i~~~l~~LH~~~~~~~ivH~dlk~~Nill~~~~~~kl~Dfgl~~~~~ 579 (717)
+||||+++|+|.+++...+ .+++..+..++.|++.||.||| +.+|+||||||+||+++.++++||+|||+++...
T Consensus 98 lv~E~~~gg~L~~~l~~~~-~~~~~~~~~~~~qi~~aL~~LH----~~givHrDlkp~NIll~~~g~vkL~DFG~a~~~~ 172 (353)
T 2i0e_A 98 FVMEYVNGGDLMYHIQQVG-RFKEPHAVFYAAEIAIGLFFLQ----SKGIIYRDLKLDNVMLDSEGHIKIADFGMCKENI 172 (353)
T ss_dssp EEEECCCSCBHHHHHHHHS-SCCHHHHHHHHHHHHHHHHHHH----HTTCBCCCCCGGGEEECTTSCEEECCCTTCBCCC
T ss_pred EEEeCCCCCcHHHHHHhcC-CCCHHHHHHHHHHHHHHHHHHH----HCCEEeccCCHHHEEEcCCCcEEEEeCCcccccc
Confidence 9999999999999998654 3899999999999999999999 6789999999999999999999999999998643
Q ss_pred CCCCceeeeccccCccccCCCccCCCCcCcccchhhHHHHHHHHHhCCCCCCccccCcchHHHHHHhhCCCchhhhcccc
Q 005040 580 EGEDSVIQTMTMATIGYMAPEYGSEGIVSTKCDVYSYGVLLMETFTEKKPTDEMFTGEMSLRRWVKESLPHRLTEVVDAN 659 (717)
Q Consensus 580 ~~~~~~~~~~~~~t~~y~aPE~~~~~~~~~~~Dvws~G~il~el~tg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 659 (717)
.... .....+||+.|+|||++.+..++.++||||+||++|||++|+.||..... ....+.+... .
T Consensus 173 ~~~~--~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~ell~G~~Pf~~~~~--~~~~~~i~~~-----------~ 237 (353)
T 2i0e_A 173 WDGV--TTKTFCGTPDYIAPEIIAYQPYGKSVDWWAFGVLLYEMLAGQAPFEGEDE--DELFQSIMEH-----------N 237 (353)
T ss_dssp CTTC--CBCCCCSCGGGCCHHHHTTCCBSTHHHHHHHHHHHHHHHHSSCSSCCSSH--HHHHHHHHHC-----------C
T ss_pred cCCc--ccccccCCccccChhhhcCCCcCCcccccchHHHHHHHHcCCCCCCCCCH--HHHHHHHHhC-----------C
Confidence 2221 23445799999999999999999999999999999999999999975321 1111111110 0
Q ss_pred chhhhhhhhhhHHHHHHHHHHHhhccCCCCCCCCC-----HHHHHH
Q 005040 660 LVREEQAFSDKMDCLFSIMDLALDCCMDTPHKRIH-----MTDAAA 700 (717)
Q Consensus 660 ~~~~~~~~~~~~~~~~~l~~li~~cl~~~P~~Rpt-----~~ev~~ 700 (717)
. .+ +..++.++.+++.+||+.||++||+ ++|+++
T Consensus 238 ~-----~~--p~~~s~~~~~li~~lL~~dP~~R~~~~~~~~~~i~~ 276 (353)
T 2i0e_A 238 V-----AY--PKSMSKEAVAICKGLMTKHPGKRLGCGPEGERDIKE 276 (353)
T ss_dssp C-----CC--CTTSCHHHHHHHHHHTCSCTTSCTTCSTTHHHHHHT
T ss_pred C-----CC--CCCCCHHHHHHHHHHhhcCHHHcCCCCCCCHHHHhc
Confidence 0 00 1123466889999999999999996 455553
No 120
>1opk_A P150, C-ABL, proto-oncogene tyrosine-protein kinase ABL1; transferase; HET: MYR P16; 1.80A {Mus musculus} SCOP: b.34.2.1 d.93.1.1 d.144.1.7 PDB: 1opl_A* 2fo0_A* 2abl_A
Probab=100.00 E-value=4.2e-41 Score=370.52 Aligned_cols=256 Identities=25% Similarity=0.399 Sum_probs=212.7
Q ss_pred hccCCccccccccccEEEEEEEec-CCCeEEEEEechhhHHHHHHHHHHHHHHHhcCCCceeeEeeeeecCCeeEEEEEc
Q 005040 426 TDEFNECNLLGTGGFGSVYKGTLS-DGTNVAIKIFNLQLERAFRSFDSECEILRNVRHRNLLKILGSCSNLDFKALVLEF 504 (717)
Q Consensus 426 ~~~~~~~~~lg~G~~g~V~~~~~~-~~~~vavK~~~~~~~~~~~~~~~e~~~l~~l~hpniv~~~~~~~~~~~~~lv~e~ 504 (717)
..+|++.+.||+|+||.||+|.++ ++..||||+++.... ..+.+.+|++++++++||||+++++++.+.+..++||||
T Consensus 219 ~~~~~~~~~lG~G~fg~Vy~~~~~~~~~~vavK~~~~~~~-~~~~~~~E~~~l~~l~hpniv~l~~~~~~~~~~~lv~E~ 297 (495)
T 1opk_A 219 RTDITMKHKLGGGQYGEVYEGVWKKYSLTVAVKTLKEDTM-EVEEFLKEAAVMKEIKHPNLVQLLGVCTREPPFYIITEF 297 (495)
T ss_dssp GGGEEEEEESGGGTTSSEEEEEEGGGTEEEEEEECCSSSS-CHHHHHHHHHHHHHCCCTTBCCEEEEECSSSSCEEEEEC
T ss_pred HHHceeeeEecCCCCeEEEEEEEcCCCeEEEEEEecCccc-chHHHHHHHHHHHhcCCCCEeeEEEEEecCCcEEEEEEc
Confidence 467889999999999999999986 588999999975432 346789999999999999999999999999999999999
Q ss_pred cCCCCHHHHHhhC-CCCCCHHHHHHHHHHHHHHHHHHhhcCCCCCeEecCCCCCCeeeCCCCcEEEeeeccccccCCCCC
Q 005040 505 MPNGSLEKWLYSH-NYFLDILQRLNIMIDVGSALEYLHHCHSSAPIIHCDLKPTNILLDENMVAHVSDFGISKLLGEGED 583 (717)
Q Consensus 505 ~~~g~L~~~l~~~-~~~~~~~~~~~i~~~i~~~l~~LH~~~~~~~ivH~dlk~~Nill~~~~~~kl~Dfgl~~~~~~~~~ 583 (717)
+++|+|.++++.. ...+++..+..++.|++.||+||| +.+|+||||||+|||++.++.+||+|||+++......
T Consensus 298 ~~~g~L~~~l~~~~~~~~~~~~~~~i~~qi~~~L~~LH----~~~ivHrDlkp~NIll~~~~~~kl~DFG~a~~~~~~~- 372 (495)
T 1opk_A 298 MTYGNLLDYLRECNRQEVSAVVLLYMATQISSAMEYLE----KKNFIHRNLAARNCLVGENHLVKVADFGLSRLMTGDT- 372 (495)
T ss_dssp CTTCBHHHHHHHSCTTTSCHHHHHHHHHHHHHHHHHHH----HTTEECSCCSGGGEEECGGGCEEECCTTCEECCTTCC-
T ss_pred cCCCCHHHHHHhcCcCCCCHHHHHHHHHHHHHHHHHHH----hCCcccCCCChhhEEECCCCcEEEeecccceeccCCc-
Confidence 9999999999864 345899999999999999999999 6789999999999999999999999999998764332
Q ss_pred ceeeeccccCccccCCCccCCCCcCcccchhhHHHHHHHHHh-CCCCCCccccCcchHHHHHHhhCCCchhhhccccchh
Q 005040 584 SVIQTMTMATIGYMAPEYGSEGIVSTKCDVYSYGVLLMETFT-EKKPTDEMFTGEMSLRRWVKESLPHRLTEVVDANLVR 662 (717)
Q Consensus 584 ~~~~~~~~~t~~y~aPE~~~~~~~~~~~Dvws~G~il~el~t-g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 662 (717)
........+|+.|+|||++.+..++.++|||||||++|||++ |+.||...... .....+.....
T Consensus 373 ~~~~~~~~~~~~y~aPE~~~~~~~~~~sDvwSlG~~l~el~t~g~~p~~~~~~~--~~~~~~~~~~~------------- 437 (495)
T 1opk_A 373 YTAHAGAKFPIKWTAPESLAYNKFSIKSDVWAFGVLLWEIATYGMSPYPGIDLS--QVYELLEKDYR------------- 437 (495)
T ss_dssp EECCTTCCCCGGGCCHHHHHHCEECHHHHHHHHHHHHHHHHTTSCCSSTTCCGG--GHHHHHHTTCC-------------
T ss_pred eeecCCCcCCcceeCHhHHhcCCCCcHHhHHhHHHHHHHHHhCCCCCCCCCCHH--HHHHHHHcCCC-------------
Confidence 222233456788999999988899999999999999999999 99999764322 22222211110
Q ss_pred hhhhhhhhHHHHHHHHHHHhhccCCCCCCCCCHHHHHHHHHHhH
Q 005040 663 EEQAFSDKMDCLFSIMDLALDCCMDTPHKRIHMTDAAAKLRKIK 706 (717)
Q Consensus 663 ~~~~~~~~~~~~~~l~~li~~cl~~~P~~Rpt~~ev~~~L~~~~ 706 (717)
...+..++.++.++|.+||+.||++|||+.++++.|+++.
T Consensus 438 ----~~~~~~~~~~l~~li~~cl~~dP~~RPs~~el~~~L~~~~ 477 (495)
T 1opk_A 438 ----MERPEGCPEKVYELMRACWQWNPSDRPSFAEIHQAFETMF 477 (495)
T ss_dssp ----CCCCTTCCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHTSC
T ss_pred ----CCCCCCCCHHHHHHHHHHcCcChhHCcCHHHHHHHHHHHH
Confidence 0112245567889999999999999999999999999874
No 121
>2buj_A Serine/threonine-protein kinase 16; transferase, ATP-binding, lipoprotein, myristate, PA phosphorylation; HET: STU; 2.6A {Homo sapiens}
Probab=100.00 E-value=1.6e-40 Score=345.84 Aligned_cols=266 Identities=24% Similarity=0.282 Sum_probs=210.2
Q ss_pred hccCCccccccccccEEEEEEEe-cCCCeEEEEEechhhHHHHHHHHHHHHHHHhcCCCceeeEeeeee----cCCeeEE
Q 005040 426 TDEFNECNLLGTGGFGSVYKGTL-SDGTNVAIKIFNLQLERAFRSFDSECEILRNVRHRNLLKILGSCS----NLDFKAL 500 (717)
Q Consensus 426 ~~~~~~~~~lg~G~~g~V~~~~~-~~~~~vavK~~~~~~~~~~~~~~~e~~~l~~l~hpniv~~~~~~~----~~~~~~l 500 (717)
.++|++.+.||+|+||.||+|.. .+++.||||++........+.+.+|+++++.++||||+++++++. .....++
T Consensus 28 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~~~~~l 107 (317)
T 2buj_A 28 NKHYLFIQKLGEGGFSYVDLVEGLHDGHFYALKRILCHEQQDREEAQREADMHRLFNHPNILRLVAYCLRERGAKHEAWL 107 (317)
T ss_dssp TEEEEEEEEEEC--CEEEEEEEETTTCCEEEEEEEEESSHHHHHHHHHHHHHHHTCCCTTBCCCCEEEEEEETTEEEEEE
T ss_pred CeEEEEEEEecCCCCeEEEEEEecCCCcEEEEEEEecCCHHHHHHHHHHHHHHhhcCCCCeeeEEEEEEeccCCCceeEE
Confidence 46899999999999999999997 489999999987655566678899999999999999999999986 3457899
Q ss_pred EEEccCCCCHHHHHhh---CCCCCCHHHHHHHHHHHHHHHHHHhhcCCCCCeEecCCCCCCeeeCCCCcEEEeeeccccc
Q 005040 501 VLEFMPNGSLEKWLYS---HNYFLDILQRLNIMIDVGSALEYLHHCHSSAPIIHCDLKPTNILLDENMVAHVSDFGISKL 577 (717)
Q Consensus 501 v~e~~~~g~L~~~l~~---~~~~~~~~~~~~i~~~i~~~l~~LH~~~~~~~ivH~dlk~~Nill~~~~~~kl~Dfgl~~~ 577 (717)
||||+++|+|.+++.. ....+++..++.++.|+++||.||| +.+|+||||||+||+++.++.+||+|||++..
T Consensus 108 v~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~i~~qi~~~L~~LH----~~~ivH~dlkp~NIl~~~~~~~kl~dfg~~~~ 183 (317)
T 2buj_A 108 LLPFFKRGTLWNEIERLKDKGNFLTEDQILWLLLGICRGLEAIH----AKGYAHRDLKPTNILLGDEGQPVLMDLGSMNQ 183 (317)
T ss_dssp EEECCTTCBHHHHHHHHHTTTCCCCHHHHHHHHHHHHHHHHHHH----HTTEECCCCCGGGEEECTTSCEEECCCSSCEE
T ss_pred EEEeCCCCcHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHH----hCCcccCCCCHHHEEEcCCCCEEEEecCcchh
Confidence 9999999999999985 3556899999999999999999999 67899999999999999999999999999876
Q ss_pred cCCCCCce-------eeeccccCccccCCCccCCCC---cCcccchhhHHHHHHHHHhCCCCCCccccCcchHHHHHHhh
Q 005040 578 LGEGEDSV-------IQTMTMATIGYMAPEYGSEGI---VSTKCDVYSYGVLLMETFTEKKPTDEMFTGEMSLRRWVKES 647 (717)
Q Consensus 578 ~~~~~~~~-------~~~~~~~t~~y~aPE~~~~~~---~~~~~Dvws~G~il~el~tg~~p~~~~~~~~~~~~~~~~~~ 647 (717)
........ ......||+.|+|||++.+.. ++.++||||||+++|||++|+.||.................
T Consensus 184 ~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~~~Di~slG~il~el~~g~~p~~~~~~~~~~~~~~~~~~ 263 (317)
T 2buj_A 184 ACIHVEGSRQALTLQDWAAQRCTISYRAPELFSVQSHCVIDERTDVWSLGCVLYAMMFGEGPYDMVFQKGDSVALAVQNQ 263 (317)
T ss_dssp SCEEEESHHHHHHHHHHHHHHSCGGGCCGGGSSCCSEEEECTHHHHHHHHHHHHHHHHSSCTTHHHHHTTSCHHHHHHCC
T ss_pred cccccccccccccccccccccCCcccCCHhHhccCCCcCCCchhhHHHHHHHHHHHHhCCCChhhhhcccchhhHHhhcc
Confidence 53211000 012235699999999887544 78999999999999999999999965322222222211110
Q ss_pred CCCchhhhccccchhhhhhhhhhHHHHHHHHHHHhhccCCCCCCCCCHHHHHHHHHHhHHhhccc
Q 005040 648 LPHRLTEVVDANLVREEQAFSDKMDCLFSIMDLALDCCMDTPHKRIHMTDAAAKLRKIKAKFLDD 712 (717)
Q Consensus 648 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~cl~~~P~~Rpt~~ev~~~L~~~~~~~~~~ 712 (717)
. ..+....++.++.+++.+||+.||.+|||+.|+++.|+++....+++
T Consensus 264 ~-----------------~~~~~~~~~~~l~~li~~~l~~dp~~Rps~~~ll~~L~~~~~~~~~~ 311 (317)
T 2buj_A 264 L-----------------SIPQSPRHSSALWQLLNSMMTVDPHQRPHIPLLLSQLEALQPPAPGQ 311 (317)
T ss_dssp -------------------CCCCTTSCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHTCCCCCC-
T ss_pred C-----------------CCCccccCCHHHHHHHHHHhhcChhhCCCHHHHHHHhhhcCCCCCCC
Confidence 0 00111234466889999999999999999999999999987665554
No 122
>3f3z_A Calcium/calmodulin-dependent protein kinase with domain and 4 calmodulin like EF...; calcium dependent protein kinase; HET: SEP DRK; 1.84A {Cryptosporidium parvum iowa II} PDB: 2qg5_A*
Probab=100.00 E-value=3.2e-40 Score=336.51 Aligned_cols=251 Identities=21% Similarity=0.283 Sum_probs=205.9
Q ss_pred HhccCCccccccccccEEEEEEEec-CCCeEEEEEechhhHHHHHHHHHHHHHHHhcCCCceeeEeeeeecCCeeEEEEE
Q 005040 425 ATDEFNECNLLGTGGFGSVYKGTLS-DGTNVAIKIFNLQLERAFRSFDSECEILRNVRHRNLLKILGSCSNLDFKALVLE 503 (717)
Q Consensus 425 ~~~~~~~~~~lg~G~~g~V~~~~~~-~~~~vavK~~~~~~~~~~~~~~~e~~~l~~l~hpniv~~~~~~~~~~~~~lv~e 503 (717)
..++|++.+.||+|+||.||+|... ++..||+|++........+.+.+|++++++++||||+++++++.+....++|||
T Consensus 7 ~~~~y~~~~~lg~G~~g~V~~~~~~~~~~~~a~k~~~~~~~~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~~~~~~lv~e 86 (277)
T 3f3z_A 7 INQYYTLENTIGRGSWGEVKIAVQKGTRIRRAAKKIPKYFVEDVDRFKQEIEIMKSLDHPNIIRLYETFEDNTDIYLVME 86 (277)
T ss_dssp HHHHEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEEGGGCSCHHHHHHHHHHHHTCCCTTBCCEEEEEECSSEEEEEEE
T ss_pred hhhhEEeeeEEeecCCEEEEEEEeCCCCcEEEEEeehhhccchHHHHHHHHHHHHhCCCCCEeeEEEEEecCCeEEEEEe
Confidence 4578999999999999999999976 678899999987655556788999999999999999999999999999999999
Q ss_pred ccCCCCHHHHHhhCCCCCCHHHHHHHHHHHHHHHHHHhhcCCCCCeEecCCCCCCeee---CCCCcEEEeeeccccccCC
Q 005040 504 FMPNGSLEKWLYSHNYFLDILQRLNIMIDVGSALEYLHHCHSSAPIIHCDLKPTNILL---DENMVAHVSDFGISKLLGE 580 (717)
Q Consensus 504 ~~~~g~L~~~l~~~~~~~~~~~~~~i~~~i~~~l~~LH~~~~~~~ivH~dlk~~Nill---~~~~~~kl~Dfgl~~~~~~ 580 (717)
|+++++|.+++..... +++..+..++.|++.||.||| +.+|+||||||+||++ +.++.+||+|||++.....
T Consensus 87 ~~~~~~L~~~~~~~~~-~~~~~~~~i~~~i~~~l~~lH----~~~i~H~dlkp~Nil~~~~~~~~~~~l~Dfg~~~~~~~ 161 (277)
T 3f3z_A 87 LCTGGELFERVVHKRV-FRESDAARIMKDVLSAVAYCH----KLNVAHRDLKPENFLFLTDSPDSPLKLIDFGLAARFKP 161 (277)
T ss_dssp CCCSCBHHHHHHHHCS-CCHHHHHHHHHHHHHHHHHHH----HTTEECCCCSGGGEEESSSSTTCCEEECCCTTCEECCT
T ss_pred ccCCCcHHHHHHHcCC-CCHHHHHHHHHHHHHHHHHHH----HCCccCCCCCHHHEEEecCCCCCcEEEEecccceeccC
Confidence 9999999999986543 899999999999999999999 6789999999999999 7889999999999987654
Q ss_pred CCCceeeeccccCccccCCCccCCCCcCcccchhhHHHHHHHHHhCCCCCCccccCcchHHHHHHhhCCCchhhhccccc
Q 005040 581 GEDSVIQTMTMATIGYMAPEYGSEGIVSTKCDVYSYGVLLMETFTEKKPTDEMFTGEMSLRRWVKESLPHRLTEVVDANL 660 (717)
Q Consensus 581 ~~~~~~~~~~~~t~~y~aPE~~~~~~~~~~~Dvws~G~il~el~tg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 660 (717)
... .....||+.|+|||.+.+. ++.++||||+|+++|||++|+.||...... .....+...... .
T Consensus 162 ~~~---~~~~~~t~~y~aPE~~~~~-~~~~~Di~slG~~l~~l~~g~~p~~~~~~~--~~~~~~~~~~~~---------~ 226 (277)
T 3f3z_A 162 GKM---MRTKVGTPYYVSPQVLEGL-YGPECDEWSAGVMMYVLLCGYPPFSAPTDS--EVMLKIREGTFT---------F 226 (277)
T ss_dssp TSC---BCCCCSCTTTCCHHHHTTC-BCTTHHHHHHHHHHHHHHHSSCSSCCSSHH--HHHHHHHHCCCC---------C
T ss_pred ccc---hhccCCCCCccChHHhccc-CCchhhehhHHHHHHHHHHCCCCCCCCCHH--HHHHHHHhCCCC---------C
Confidence 322 2344689999999987654 899999999999999999999999763221 111111111000 0
Q ss_pred hhhhhhhhhhHHHHHHHHHHHhhccCCCCCCCCCHHHHHH
Q 005040 661 VREEQAFSDKMDCLFSIMDLALDCCMDTPHKRIHMTDAAA 700 (717)
Q Consensus 661 ~~~~~~~~~~~~~~~~l~~li~~cl~~~P~~Rpt~~ev~~ 700 (717)
.. .....++.++.+++.+||+.||++|||+.|+++
T Consensus 227 ~~-----~~~~~~~~~~~~li~~~l~~dp~~R~s~~~~l~ 261 (277)
T 3f3z_A 227 PE-----KDWLNVSPQAESLIRRLLTKSPKQRITSLQALE 261 (277)
T ss_dssp CH-----HHHTTSCHHHHHHHHHHTCSSTTTSCCHHHHTT
T ss_pred Cc-----hhhhcCCHHHHHHHHHHccCChhhCcCHHHHhc
Confidence 00 011134567889999999999999999999986
No 123
>1p4o_A Insulin-like growth factor I receptor protein; IGF-1R, kinase domain, hormone-growth factor complex; 1.50A {Homo sapiens} SCOP: d.144.1.7 PDB: 1m7n_A 3lvp_A* 3lw0_A* 1jqh_A* 2zm3_A* 3f5p_A* 3i81_A* 2oj9_A* 3nw5_A* 3nw6_A* 3nw7_A* 3o23_A* 3qqu_A* 3d94_A* 1k3a_A* 2z8c_A* 1ir3_A* 1gag_A* 1irk_A 3bu3_A* ...
Probab=100.00 E-value=3e-41 Score=352.20 Aligned_cols=266 Identities=23% Similarity=0.393 Sum_probs=214.2
Q ss_pred HHhccCCccccccccccEEEEEEEec------CCCeEEEEEechhh-HHHHHHHHHHHHHHHhcCCCceeeEeeeeecCC
Q 005040 424 RATDEFNECNLLGTGGFGSVYKGTLS------DGTNVAIKIFNLQL-ERAFRSFDSECEILRNVRHRNLLKILGSCSNLD 496 (717)
Q Consensus 424 ~~~~~~~~~~~lg~G~~g~V~~~~~~------~~~~vavK~~~~~~-~~~~~~~~~e~~~l~~l~hpniv~~~~~~~~~~ 496 (717)
...++|++.+.||+|+||.||+|.+. +++.||+|++.... ......+.+|++++++++||||+++++++.+.+
T Consensus 22 ~~~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~~~ 101 (322)
T 1p4o_A 22 VAREKITMSRELGQGSFGMVYEGVAKGVVKDEPETRVAIKTVNEAASMRERIEFLNEASVMKEFNCHHVVRLLGVVSQGQ 101 (322)
T ss_dssp CCGGGEEEEEEEEECSSSEEEEEEEEEEETTEEEEEEEEEECCTTSCHHHHHHHHHHHHHGGGCCCTTBCCEEEEECSSS
T ss_pred chhhheeeeeEeccCCceEEEeeeecCccCCCCceEEEEEecccccCHHHHHHHHHHHHHHHhcCCCCEeeeEEEEccCC
Confidence 34578999999999999999999864 36789999997543 334467889999999999999999999999999
Q ss_pred eeEEEEEccCCCCHHHHHhhCC---------CCCCHHHHHHHHHHHHHHHHHHhhcCCCCCeEecCCCCCCeeeCCCCcE
Q 005040 497 FKALVLEFMPNGSLEKWLYSHN---------YFLDILQRLNIMIDVGSALEYLHHCHSSAPIIHCDLKPTNILLDENMVA 567 (717)
Q Consensus 497 ~~~lv~e~~~~g~L~~~l~~~~---------~~~~~~~~~~i~~~i~~~l~~LH~~~~~~~ivH~dlk~~Nill~~~~~~ 567 (717)
..++||||+++|+|.+++.... ..+++..+..++.|++.||.||| +.+|+||||||+||+++.++.+
T Consensus 102 ~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~qi~~~l~~lH----~~~i~H~dikp~NIli~~~~~~ 177 (322)
T 1p4o_A 102 PTLVIMELMTRGDLKSYLRSLRPAMANNPVLAPPSLSKMIQMAGEIADGMAYLN----ANKFVHRDLAARNCMVAEDFTV 177 (322)
T ss_dssp SCEEEEECCTTCBHHHHHHHHHHHHHHCTTCCCCCHHHHHHHHHHHHHHHHHHH----HTTCBCSCCSGGGEEECTTCCE
T ss_pred ccEEEEEeCCCCcHHHHHHHhchhhccCCCCCCcCHHHHHHHHHHHHHHHHHHH----HCCCccCCCccceEEEcCCCeE
Confidence 9999999999999999997531 34689999999999999999999 6789999999999999999999
Q ss_pred EEeeeccccccCCCCCceeeeccccCccccCCCccCCCCcCcccchhhHHHHHHHHHh-CCCCCCccccCcchHHHHHHh
Q 005040 568 HVSDFGISKLLGEGEDSVIQTMTMATIGYMAPEYGSEGIVSTKCDVYSYGVLLMETFT-EKKPTDEMFTGEMSLRRWVKE 646 (717)
Q Consensus 568 kl~Dfgl~~~~~~~~~~~~~~~~~~t~~y~aPE~~~~~~~~~~~Dvws~G~il~el~t-g~~p~~~~~~~~~~~~~~~~~ 646 (717)
||+|||++................+|+.|+|||++.+..++.++||||+|+++|||++ |+.||..... ......+..
T Consensus 178 kl~Dfg~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~el~~~g~~p~~~~~~--~~~~~~~~~ 255 (322)
T 1p4o_A 178 KIGDFGMTRDIYETDYYRKGGKGLLPVRWMSPESLKDGVFTTYSDVWSFGVVLWEIATLAEQPYQGLSN--EQVLRFVME 255 (322)
T ss_dssp EECCTTCCCGGGGGGCEEGGGSSEECGGGCCHHHHHHCCCCHHHHHHHHHHHHHHHHHTSCCTTTTSCH--HHHHHHHHT
T ss_pred EECcCccccccccccccccccCCCCCCCccChhhhccCCCCchhhHHHHHHHHHHHHhcCCCccccCCH--HHHHHHHHc
Confidence 9999999987644332222333456889999999988889999999999999999999 8899875321 111111111
Q ss_pred hCCCchhhhccccchhhhhhhhhhHHHHHHHHHHHhhccCCCCCCCCCHHHHHHHHHHhHHhhccc
Q 005040 647 SLPHRLTEVVDANLVREEQAFSDKMDCLFSIMDLALDCCMDTPHKRIHMTDAAAKLRKIKAKFLDD 712 (717)
Q Consensus 647 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~cl~~~P~~Rpt~~ev~~~L~~~~~~~~~~ 712 (717)
.. .. .....++..+.+++.+||+.||++|||+.|+++.|+++......+
T Consensus 256 ~~-----------~~------~~~~~~~~~l~~li~~~l~~dp~~Rps~~e~l~~L~~~~~~~~~~ 304 (322)
T 1p4o_A 256 GG-----------LL------DKPDNCPDMLFELMRMCWQYNPKMRPSFLEIISSIKEEMEPGFRE 304 (322)
T ss_dssp TC-----------CC------CCCTTCCHHHHHHHHHHTCSSGGGSCCHHHHHHHHGGGSCTTHHH
T ss_pred CC-----------cC------CCCCCCCHHHHHHHHHHcCCCcccCcCHHHHHHHHHHhhccCCcc
Confidence 10 00 011234566889999999999999999999999999875544433
No 124
>1mqb_A Ephrin type-A receptor 2; tyrosine protein kinase, transferase; HET: ANP; 2.30A {Homo sapiens} SCOP: d.144.1.7
Probab=100.00 E-value=1.9e-40 Score=347.21 Aligned_cols=260 Identities=27% Similarity=0.475 Sum_probs=204.9
Q ss_pred ccCCccccccccccEEEEEEEecC-----CCeEEEEEechhh-HHHHHHHHHHHHHHHhcCCCceeeEeeeeecCCeeEE
Q 005040 427 DEFNECNLLGTGGFGSVYKGTLSD-----GTNVAIKIFNLQL-ERAFRSFDSECEILRNVRHRNLLKILGSCSNLDFKAL 500 (717)
Q Consensus 427 ~~~~~~~~lg~G~~g~V~~~~~~~-----~~~vavK~~~~~~-~~~~~~~~~e~~~l~~l~hpniv~~~~~~~~~~~~~l 500 (717)
.+|+..+.||+|+||.||+|.... +..||||++.... ......+.+|++++++++||||+++++++.+.+..++
T Consensus 44 ~~~~~~~~lG~G~~g~Vy~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~l 123 (333)
T 1mqb_A 44 SCVTRQKVIGAGEFGEVYKGMLKTSSGKKEVPVAIKTLKAGYTEKQRVDFLGEAGIMGQFSHHNIIRLEGVISKYKPMMI 123 (333)
T ss_dssp TTEEEEEEEEECSSSEEEEEEEEC---CCEEEEEEEEECTTCCHHHHHHHHHHHHHHHTCCCTTBCCEEEEECSSSSEEE
T ss_pred HHhhcccEEecCCCeEEEEEEEecCCCCccccEEEEEcCCCCCHHHHHHHHHHHHHHHhCCCCCCCcEEEEEecCCCcEE
Confidence 567778999999999999998642 2359999997543 3345678899999999999999999999999999999
Q ss_pred EEEccCCCCHHHHHhhCCCCCCHHHHHHHHHHHHHHHHHHhhcCCCCCeEecCCCCCCeeeCCCCcEEEeeeccccccCC
Q 005040 501 VLEFMPNGSLEKWLYSHNYFLDILQRLNIMIDVGSALEYLHHCHSSAPIIHCDLKPTNILLDENMVAHVSDFGISKLLGE 580 (717)
Q Consensus 501 v~e~~~~g~L~~~l~~~~~~~~~~~~~~i~~~i~~~l~~LH~~~~~~~ivH~dlk~~Nill~~~~~~kl~Dfgl~~~~~~ 580 (717)
||||+++|+|.+++......+++..+..++.|++.||.||| +.+|+||||||+||+++.++.+||+|||++.....
T Consensus 124 v~e~~~~~~L~~~l~~~~~~~~~~~~~~i~~qi~~aL~~LH----~~~ivH~Dikp~NIl~~~~~~~kl~Dfg~~~~~~~ 199 (333)
T 1mqb_A 124 ITEYMENGALDKFLREKDGEFSVLQLVGMLRGIAAGMKYLA----NMNYVHRDLAARNILVNSNLVCKVSDFGLSRVLED 199 (333)
T ss_dssp EEECCTTEEHHHHHHHTTTCSCHHHHHHHHHHHHHHHHHHH----HTTCCCSCCCGGGEEECTTCCEEECCCCC------
T ss_pred EEeCCCCCcHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHH----hCCeeCCCCChheEEECCCCcEEECCCCcchhhcc
Confidence 99999999999999987677999999999999999999999 67899999999999999999999999999987654
Q ss_pred CCCc-eeeeccccCccccCCCccCCCCcCcccchhhHHHHHHHHHh-CCCCCCccccCcchHHHHHHhhCCCchhhhccc
Q 005040 581 GEDS-VIQTMTMATIGYMAPEYGSEGIVSTKCDVYSYGVLLMETFT-EKKPTDEMFTGEMSLRRWVKESLPHRLTEVVDA 658 (717)
Q Consensus 581 ~~~~-~~~~~~~~t~~y~aPE~~~~~~~~~~~Dvws~G~il~el~t-g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 658 (717)
.... .......+|+.|+|||.+.+..++.++||||||+++|||++ |+.||...... .....+.....
T Consensus 200 ~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~ellt~g~~pf~~~~~~--~~~~~~~~~~~--------- 268 (333)
T 1mqb_A 200 DPEATYTTSGGKIPIRWTAPEAISYRKFTSASDVWSFGIVMWEVMTYGERPYWELSNH--EVMKAINDGFR--------- 268 (333)
T ss_dssp -----------CCCGGGSCHHHHHSCCCCHHHHHHHHHHHHHHHHTTSCCTTTTCCHH--HHHHHHHTTCC---------
T ss_pred ccccccccCCCCccccccCchhcccCCCCchhhhHHHHHHHHHHHcCCCCCcccCCHH--HHHHHHHCCCc---------
Confidence 3221 11223346788999999988899999999999999999999 99999653221 11111111100
Q ss_pred cchhhhhhhhhhHHHHHHHHHHHhhccCCCCCCCCCHHHHHHHHHHhHHhh
Q 005040 659 NLVREEQAFSDKMDCLFSIMDLALDCCMDTPHKRIHMTDAAAKLRKIKAKF 709 (717)
Q Consensus 659 ~~~~~~~~~~~~~~~~~~l~~li~~cl~~~P~~Rpt~~ev~~~L~~~~~~~ 709 (717)
.+....++..+.+++.+||+.||++||++.|+++.|+++.+..
T Consensus 269 --------~~~~~~~~~~l~~li~~~l~~~p~~Rps~~~l~~~L~~~~~~~ 311 (333)
T 1mqb_A 269 --------LPTPMDCPSAIYQLMMQCWQQERARRPKFADIVSILDKLIRAP 311 (333)
T ss_dssp --------CCCCTTCBHHHHHHHHHHTCSSTTTSCCHHHHHHHHHHHHHSG
T ss_pred --------CCCcccCCHHHHHHHHHHcCCChhhCcCHHHHHHHHHHHHhcc
Confidence 0111234566889999999999999999999999999986643
No 125
>3cc6_A Protein tyrosine kinase 2 beta; focal adhesion kinase, structural genomics, structural genom consortium, SGC, ATP-binding, membrane; 1.60A {Homo sapiens} PDB: 3fzs_A* 3et7_A 3fzo_A* 3fzr_A* 3fzp_A* 3fzt_A* 3h3c_A*
Probab=100.00 E-value=4.7e-40 Score=335.98 Aligned_cols=259 Identities=23% Similarity=0.344 Sum_probs=208.0
Q ss_pred hccCCccccccccccEEEEEEEecC----CCeEEEEEechhh-HHHHHHHHHHHHHHHhcCCCceeeEeeeeecCCeeEE
Q 005040 426 TDEFNECNLLGTGGFGSVYKGTLSD----GTNVAIKIFNLQL-ERAFRSFDSECEILRNVRHRNLLKILGSCSNLDFKAL 500 (717)
Q Consensus 426 ~~~~~~~~~lg~G~~g~V~~~~~~~----~~~vavK~~~~~~-~~~~~~~~~e~~~l~~l~hpniv~~~~~~~~~~~~~l 500 (717)
.++|++.+.||+|+||.||+|.+.+ +..||+|++.... ....+.+.+|++++++++||||+++++++.+. ..++
T Consensus 11 ~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~~-~~~~ 89 (281)
T 3cc6_A 11 REDVVLNRILGEGFFGEVYEGVYTNHKGEKINVAVKTCKKDCTLDNKEKFMSEAVIMKNLDHPHIVKLIGIIEEE-PTWI 89 (281)
T ss_dssp GGGEEEEEEEEECSSSEEEEEEEECTTCCEEEEEEEECCTTSCHHHHHHHHHHHHHHHHHCCTTBCCEEEEECSS-SCEE
T ss_pred ccceEEEEEEEecCCeeEEEeEEcCCCCCcceEEEEecccccCchHHHHHHHHHHHHHhCCCCCcceEEEEEcCC-CCEE
Confidence 4789999999999999999998642 3459999987653 34457789999999999999999999998754 5689
Q ss_pred EEEccCCCCHHHHHhhCCCCCCHHHHHHHHHHHHHHHHHHhhcCCCCCeEecCCCCCCeeeCCCCcEEEeeeccccccCC
Q 005040 501 VLEFMPNGSLEKWLYSHNYFLDILQRLNIMIDVGSALEYLHHCHSSAPIIHCDLKPTNILLDENMVAHVSDFGISKLLGE 580 (717)
Q Consensus 501 v~e~~~~g~L~~~l~~~~~~~~~~~~~~i~~~i~~~l~~LH~~~~~~~ivH~dlk~~Nill~~~~~~kl~Dfgl~~~~~~ 580 (717)
||||+++++|.+++......+++..+..++.|++.||.||| +.+|+||||||+||+++.++.+||+|||++.....
T Consensus 90 v~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~i~~~l~~lH----~~~i~H~dlkp~Nil~~~~~~~kl~Dfg~~~~~~~ 165 (281)
T 3cc6_A 90 IMELYPYGELGHYLERNKNSLKVLTLVLYSLQICKAMAYLE----SINCVHRDIAVRNILVASPECVKLGDFGLSRYIED 165 (281)
T ss_dssp EEECCTTCBHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHHH----HTTCCCCCCSGGGEEEEETTEEEECCCCGGGCC--
T ss_pred EEecCCCCCHHHHHHhccccCCHHHHHHHHHHHHHHHHHHH----HCCcccCCCccceEEECCCCcEEeCccCCCccccc
Confidence 99999999999999877667999999999999999999999 67899999999999999999999999999987654
Q ss_pred CCCceeeeccccCccccCCCccCCCCcCcccchhhHHHHHHHHHh-CCCCCCccccCcchHHHHHHhhCCCchhhhcccc
Q 005040 581 GEDSVIQTMTMATIGYMAPEYGSEGIVSTKCDVYSYGVLLMETFT-EKKPTDEMFTGEMSLRRWVKESLPHRLTEVVDAN 659 (717)
Q Consensus 581 ~~~~~~~~~~~~t~~y~aPE~~~~~~~~~~~Dvws~G~il~el~t-g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 659 (717)
... .......+|+.|+|||+..+..++.++||||||+++|||++ |+.||...... .....+......
T Consensus 166 ~~~-~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~llt~g~~p~~~~~~~--~~~~~~~~~~~~--------- 233 (281)
T 3cc6_A 166 EDY-YKASVTRLPIKWMSPESINFRRFTTASDVWMFAVCMWEILSFGKQPFFWLENK--DVIGVLEKGDRL--------- 233 (281)
T ss_dssp --------CCCCCGGGCCHHHHHHCCCCHHHHHHHHHHHHHHHHTTTCCTTTTSCGG--GHHHHHHHTCCC---------
T ss_pred ccc-cccccCCCCcceeCchhhccCCCCchhccHHHHHHHHHHHhCCCCCcccCChH--HHHHHHhcCCCC---------
Confidence 322 12233457889999999988889999999999999999998 99999753222 122222111100
Q ss_pred chhhhhhhhhhHHHHHHHHHHHhhccCCCCCCCCCHHHHHHHHHHhHHhh
Q 005040 660 LVREEQAFSDKMDCLFSIMDLALDCCMDTPHKRIHMTDAAAKLRKIKAKF 709 (717)
Q Consensus 660 ~~~~~~~~~~~~~~~~~l~~li~~cl~~~P~~Rpt~~ev~~~L~~~~~~~ 709 (717)
+....++..+.+++.+||+.||++|||+.|+++.|+++.+..
T Consensus 234 --------~~~~~~~~~l~~li~~~l~~~p~~Rps~~ell~~L~~~~~~~ 275 (281)
T 3cc6_A 234 --------PKPDLCPPVLYTLMTRCWDYDPSDRPRFTELVCSLSDVYQME 275 (281)
T ss_dssp --------CCCTTCCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHHHHH
T ss_pred --------CCCCCCCHHHHHHHHHHccCCchhCcCHHHHHHHHHHHHHhh
Confidence 011123456889999999999999999999999999986643
No 126
>1fmk_A C-SRC, P60-SRC, tyrosine-protein kinase SRC; tyrosine kinase, phosphorylation, SH2, SH3, phosphotyrosine, proto-oncogene, phosphotransferase; HET: PTR; 1.50A {Homo sapiens} SCOP: b.34.2.1 d.93.1.1 d.144.1.7 PDB: 1y57_A* 2src_A* 1ksw_A* 2ptk_A* 1yol_A* 2oiq_A* 3d7t_B* 3dqx_A* 3el7_A* 3el8_A* 3en4_A* 3en5_A* 3en6_A* 3en7_A* 3f6x_A* 3g6g_A* 3uqf_A* 3uqg_A* 4agw_A* 3oez_A* ...
Probab=100.00 E-value=2.8e-41 Score=368.05 Aligned_cols=262 Identities=27% Similarity=0.425 Sum_probs=208.5
Q ss_pred hccCCccccccccccEEEEEEEecCCCeEEEEEechhhHHHHHHHHHHHHHHHhcCCCceeeEeeeeecCCeeEEEEEcc
Q 005040 426 TDEFNECNLLGTGGFGSVYKGTLSDGTNVAIKIFNLQLERAFRSFDSECEILRNVRHRNLLKILGSCSNLDFKALVLEFM 505 (717)
Q Consensus 426 ~~~~~~~~~lg~G~~g~V~~~~~~~~~~vavK~~~~~~~~~~~~~~~e~~~l~~l~hpniv~~~~~~~~~~~~~lv~e~~ 505 (717)
.++|++.+.||+|+||.||+|.++++..||||+++.... ..+.+.+|++++++++||||+++++++.+ +..++||||+
T Consensus 183 ~~~~~~~~~lG~G~fg~Vy~~~~~~~~~vavK~~~~~~~-~~~~~~~E~~~l~~l~hp~iv~~~~~~~~-~~~~iv~e~~ 260 (452)
T 1fmk_A 183 RESLRLEVKLGQGCFGEVWMGTWNGTTRVAIKTLKPGTM-SPEAFLQEAQVMKKLRHEKLVQLYAVVSE-EPIYIVTEYM 260 (452)
T ss_dssp GGGEEEEEEEEECSSCEEEEEEETTTEEEEEEECCTTSS-CHHHHHHHHHHHHHCCCTTBCCEEEEECS-SSCEEEECCC
T ss_pred hhHceeeeeecCCCCeEEEEEEECCCceEEEEEeccCCC-CHHHHHHHHHHHHhCCCCCEeeEEEEEcC-CceEEEehhh
Confidence 467889999999999999999998888899999975432 24678999999999999999999999876 6789999999
Q ss_pred CCCCHHHHHhhC-CCCCCHHHHHHHHHHHHHHHHHHhhcCCCCCeEecCCCCCCeeeCCCCcEEEeeeccccccCCCCCc
Q 005040 506 PNGSLEKWLYSH-NYFLDILQRLNIMIDVGSALEYLHHCHSSAPIIHCDLKPTNILLDENMVAHVSDFGISKLLGEGEDS 584 (717)
Q Consensus 506 ~~g~L~~~l~~~-~~~~~~~~~~~i~~~i~~~l~~LH~~~~~~~ivH~dlk~~Nill~~~~~~kl~Dfgl~~~~~~~~~~ 584 (717)
++|+|.++++.. +..+++..+..++.|++.||+||| +.+|+||||||+|||++.++.+||+|||+++.......
T Consensus 261 ~~gsL~~~l~~~~~~~~~~~~~~~i~~qi~~~l~~LH----~~~ivHrDlkp~Nill~~~~~~kl~DfG~a~~~~~~~~- 335 (452)
T 1fmk_A 261 SKGSLLDFLKGETGKYLRLPQLVDMAAQIASGMAYVE----RMNYVHRDLRAANILVGENLVCKVADFGLARLIEDNEY- 335 (452)
T ss_dssp TTCBHHHHHSHHHHTTCCHHHHHHHHHHHHHHHHHHH----HTTCCCSCCSGGGEEECGGGCEEECCCCTTC--------
T ss_pred cCCCHHHHHHhcCCCCCCHHHHHHHHHHHHHHHHHHH----hCCeeCCCCChhhEEECCCCCEEECCCccceecCCCce-
Confidence 999999999853 345899999999999999999999 67899999999999999999999999999987643321
Q ss_pred eeeeccccCccccCCCccCCCCcCcccchhhHHHHHHHHHh-CCCCCCccccCcchHHHHHHhhCCCchhhhccccchhh
Q 005040 585 VIQTMTMATIGYMAPEYGSEGIVSTKCDVYSYGVLLMETFT-EKKPTDEMFTGEMSLRRWVKESLPHRLTEVVDANLVRE 663 (717)
Q Consensus 585 ~~~~~~~~t~~y~aPE~~~~~~~~~~~Dvws~G~il~el~t-g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 663 (717)
.......+|+.|+|||.+.++.++.++||||||+++|||++ |+.||.+.... .....+.....
T Consensus 336 ~~~~~~~~~~~y~aPE~~~~~~~~~~sDvwslG~~l~el~t~g~~P~~~~~~~--~~~~~i~~~~~-------------- 399 (452)
T 1fmk_A 336 TARQGAKFPIKWTAPEAALYGRFTIKSDVWSFGILLTELTTKGRVPYPGMVNR--EVLDQVERGYR-------------- 399 (452)
T ss_dssp -------CCGGGSCHHHHHHCCCCHHHHHHHHHHHHHHHHTTTCCSSTTCCHH--HHHHHHHTTCC--------------
T ss_pred ecccCCcccccccCHhHHhcCCCCccccHHhHHHHHHHHHhCCCCCCCCCCHH--HHHHHHHcCCC--------------
Confidence 12233456889999999988899999999999999999999 99999764221 11111111100
Q ss_pred hhhhhhhHHHHHHHHHHHhhccCCCCCCCCCHHHHHHHHHHhHHhhccch
Q 005040 664 EQAFSDKMDCLFSIMDLALDCCMDTPHKRIHMTDAAAKLRKIKAKFLDDV 713 (717)
Q Consensus 664 ~~~~~~~~~~~~~l~~li~~cl~~~P~~Rpt~~ev~~~L~~~~~~~~~~~ 713 (717)
.+.+..++..+.+++.+||+.||++|||++++++.|+++......++
T Consensus 400 ---~~~~~~~~~~l~~li~~cl~~dP~~Rpt~~~l~~~L~~~~~~~~~~~ 446 (452)
T 1fmk_A 400 ---MPCPPECPESLHDLMCQCWRKEPEERPTFEYLQAFLEDYFTSTEPQY 446 (452)
T ss_dssp ---CCCCTTSCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHTTTSCSCCCC
T ss_pred ---CCCCCCCCHHHHHHHHHHccCChhhCcCHHHHHHHHHHHhccCCccc
Confidence 01112456678899999999999999999999999999876554443
No 127
>3cok_A Serine/threonine-protein kinase PLK4; POLO-like kinase 4, SAK, STK18, PSI, structural genomics, protein structure initiative; HET: ANP; 2.25A {Homo sapiens}
Probab=100.00 E-value=2.3e-40 Score=337.82 Aligned_cols=249 Identities=24% Similarity=0.384 Sum_probs=186.0
Q ss_pred hccCCccccccccccEEEEEEEec-CCCeEEEEEechhhH---HHHHHHHHHHHHHHhcCCCceeeEeeeeecCCeeEEE
Q 005040 426 TDEFNECNLLGTGGFGSVYKGTLS-DGTNVAIKIFNLQLE---RAFRSFDSECEILRNVRHRNLLKILGSCSNLDFKALV 501 (717)
Q Consensus 426 ~~~~~~~~~lg~G~~g~V~~~~~~-~~~~vavK~~~~~~~---~~~~~~~~e~~~l~~l~hpniv~~~~~~~~~~~~~lv 501 (717)
.++|++.+.||+|+||.||+|+.. +++.||+|++..... ...+.+.+|++++++++||||+++++++.+.+..++|
T Consensus 10 ~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~lv 89 (278)
T 3cok_A 10 IEDFKVGNLLGKGSFAGVYRAESIHTGLEVAIKMIDKKAMYKAGMVQRVQNEVKIHCQLKHPSILELYNYFEDSNYVYLV 89 (278)
T ss_dssp GGGEEEEEEEEECSSEEEEEEEETTTCCEEEEEEEEHHHHHHTTCHHHHHHHHHHHTTBCCTTBCCEEEEEECSSEEEEE
T ss_pred cccceeeeeecCCCceEEEEEEEccCCceEEEEEeehhhhhhhhHHHHHHHHHHHHHhCCCCCeEeEEEEEccCCeEEEE
Confidence 468999999999999999999974 799999999975532 2246788999999999999999999999999999999
Q ss_pred EEccCCCCHHHHHhhCCCCCCHHHHHHHHHHHHHHHHHHhhcCCCCCeEecCCCCCCeeeCCCCcEEEeeeccccccCCC
Q 005040 502 LEFMPNGSLEKWLYSHNYFLDILQRLNIMIDVGSALEYLHHCHSSAPIIHCDLKPTNILLDENMVAHVSDFGISKLLGEG 581 (717)
Q Consensus 502 ~e~~~~g~L~~~l~~~~~~~~~~~~~~i~~~i~~~l~~LH~~~~~~~ivH~dlk~~Nill~~~~~~kl~Dfgl~~~~~~~ 581 (717)
|||+++++|.+++......+++..+..++.|+++||.||| +.+|+||||||+||+++.++.+||+|||++......
T Consensus 90 ~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~qi~~~l~~lH----~~~i~H~dl~p~Nili~~~~~~kl~dfg~~~~~~~~ 165 (278)
T 3cok_A 90 LEMCHNGEMNRYLKNRVKPFSENEARHFMHQIITGMLYLH----SHGILHRDLTLSNLLLTRNMNIKIADFGLATQLKMP 165 (278)
T ss_dssp EECCTTEEHHHHHHTCSSCCCHHHHHHHHHHHHHHHHHHH----HTTEECSSCCGGGEEECTTCCEEECCCTTCEECC--
T ss_pred EecCCCCcHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHH----HCCeecCCCCHHHEEEcCCCCEEEEeecceeeccCC
Confidence 9999999999999987667999999999999999999999 678999999999999999999999999999876432
Q ss_pred CCceeeeccccCccccCCCccCCCCcCcccchhhHHHHHHHHHhCCCCCCccccCcchHHHHHHhhCCCchhhhccccch
Q 005040 582 EDSVIQTMTMATIGYMAPEYGSEGIVSTKCDVYSYGVLLMETFTEKKPTDEMFTGEMSLRRWVKESLPHRLTEVVDANLV 661 (717)
Q Consensus 582 ~~~~~~~~~~~t~~y~aPE~~~~~~~~~~~Dvws~G~il~el~tg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 661 (717)
.. ......||+.|+|||...+..++.++||||+|+++|||++|+.||........ .. .......
T Consensus 166 ~~--~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~g~~p~~~~~~~~~-----~~--------~~~~~~~- 229 (278)
T 3cok_A 166 HE--KHYTLCGTPNYISPEIATRSAHGLESDVWSLGCMFYTLLIGRPPFDTDTVKNT-----LN--------KVVLADY- 229 (278)
T ss_dssp ----------------------------CTHHHHHHHHHHHHHHSSCSSCCCSCC------------------CCSSCC-
T ss_pred CC--cceeccCCCCcCCcchhcCCCCCchhhHHHHHHHHHHHHhCCCCCCChhHHHH-----HH--------HHhhccc-
Confidence 21 12234689999999999998999999999999999999999999975322110 00 0000000
Q ss_pred hhhhhhhhhHHHHHHHHHHHhhccCCCCCCCCCHHHHHH
Q 005040 662 REEQAFSDKMDCLFSIMDLALDCCMDTPHKRIHMTDAAA 700 (717)
Q Consensus 662 ~~~~~~~~~~~~~~~l~~li~~cl~~~P~~Rpt~~ev~~ 700 (717)
..+..++.++.+++.+||+.||++|||++++++
T Consensus 230 ------~~~~~~~~~~~~li~~~l~~dp~~Rps~~~~l~ 262 (278)
T 3cok_A 230 ------EMPSFLSIEAKDLIHQLLRRNPADRLSLSSVLD 262 (278)
T ss_dssp ------CCCTTSCHHHHHHHHHHSCSSGGGSCCHHHHTT
T ss_pred ------CCccccCHHHHHHHHHHcccCHhhCCCHHHHhc
Confidence 001123456889999999999999999999986
No 128
>3kk8_A Calcium/calmodulin dependent protein kinase II; ATP-binding, nucleotide-binding, serine/threonine-protein kinase, transferase; HET: TPO; 1.72A {Caenorhabditis elegans} PDB: 3kk9_A* 3kl8_A 2vn9_A* 3bhh_A*
Probab=100.00 E-value=8.6e-40 Score=334.66 Aligned_cols=251 Identities=24% Similarity=0.336 Sum_probs=205.4
Q ss_pred hccCCccccccccccEEEEEEEec-CCCeEEEEEechhh--HHHHHHHHHHHHHHHhcCCCceeeEeeeeecCCeeEEEE
Q 005040 426 TDEFNECNLLGTGGFGSVYKGTLS-DGTNVAIKIFNLQL--ERAFRSFDSECEILRNVRHRNLLKILGSCSNLDFKALVL 502 (717)
Q Consensus 426 ~~~~~~~~~lg~G~~g~V~~~~~~-~~~~vavK~~~~~~--~~~~~~~~~e~~~l~~l~hpniv~~~~~~~~~~~~~lv~ 502 (717)
.++|++.+.||+|+||.||+|... +++.||+|++.... ....+.+.+|++++++++||||+++++++.+....++||
T Consensus 5 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~~v~ 84 (284)
T 3kk8_A 5 SDNYDVKEELGKGAFSVVRRCVHKTTGLEFAAKIINTKKLSARDFQKLEREARICRKLQHPNIVRLHDSIQEESFHYLVF 84 (284)
T ss_dssp TTTEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEEGGGCCHHHHHHHHHHHHHHHHCCCTTBCCEEEEEECSSEEEEEE
T ss_pred hhhhhhhhhhcCcCCeEEEEEEEcCCCceEEEEEeecccCCHHHHHHHHHHHHHHHHcCCCCcCeEEEEEEcCCEEEEEE
Confidence 478999999999999999999975 68999999987553 344567889999999999999999999999999999999
Q ss_pred EccCCCCHHHHHhhCCCCCCHHHHHHHHHHHHHHHHHHhhcCCCCCeEecCCCCCCeeeCCCCc---EEEeeeccccccC
Q 005040 503 EFMPNGSLEKWLYSHNYFLDILQRLNIMIDVGSALEYLHHCHSSAPIIHCDLKPTNILLDENMV---AHVSDFGISKLLG 579 (717)
Q Consensus 503 e~~~~g~L~~~l~~~~~~~~~~~~~~i~~~i~~~l~~LH~~~~~~~ivH~dlk~~Nill~~~~~---~kl~Dfgl~~~~~ 579 (717)
||+++++|.+++.... .+++..+..++.|++.||.||| +.+|+||||||+||+++.++. +||+|||++....
T Consensus 85 e~~~~~~l~~~~~~~~-~~~~~~~~~~~~~i~~~l~~lH----~~~i~H~dikp~Nil~~~~~~~~~~kl~Dfg~~~~~~ 159 (284)
T 3kk8_A 85 DLVTGGELFEDIVARE-FYSEADASHCIQQILESIAYCH----SNGIVHRNLKPENLLLASKAKGAAVKLADFGLAIEVN 159 (284)
T ss_dssp CCCCSCBHHHHHHHHS-SCCHHHHHHHHHHHHHHHHHHH----HTTEECSCCCGGGEEESSSSTTCCEEECCCTTCEECC
T ss_pred ecCCCCCHHHHHHhcC-CCCHHHHHHHHHHHHHHHHHHH----HCCcCcCCCCHHHEEEecCCCCCcEEEeeceeeEEcc
Confidence 9999999999888654 4899999999999999999999 678999999999999986655 9999999998765
Q ss_pred CCCCceeeeccccCccccCCCccCCCCcCcccchhhHHHHHHHHHhCCCCCCccccCcchHHHHHHhhCCCchhhhcccc
Q 005040 580 EGEDSVIQTMTMATIGYMAPEYGSEGIVSTKCDVYSYGVLLMETFTEKKPTDEMFTGEMSLRRWVKESLPHRLTEVVDAN 659 (717)
Q Consensus 580 ~~~~~~~~~~~~~t~~y~aPE~~~~~~~~~~~Dvws~G~il~el~tg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 659 (717)
.... .....||+.|+|||++.+..++.++||||+|+++|||++|+.||...... .....+.......
T Consensus 160 ~~~~---~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~~l~~l~~g~~pf~~~~~~--~~~~~~~~~~~~~-------- 226 (284)
T 3kk8_A 160 DSEA---WHGFAGTPGYLSPEVLKKDPYSKPVDIWACGVILYILLVGYPPFWDEDQH--RLYAQIKAGAYDY-------- 226 (284)
T ss_dssp SSCB---CCCSCSCGGGCCHHHHTTCCBCTHHHHHHHHHHHHHHHHSSCSSCCSSHH--HHHHHHHHTCCCC--------
T ss_pred cCcc---ccCCCCCcCCcCchhhcCCCCCcccchHHHHHHHHHHHHCCCCCCCCchh--HHHHHHHhccccC--------
Confidence 4322 23456899999999999999999999999999999999999999653211 1111111110000
Q ss_pred chhhhhhhhhhHHHHHHHHHHHhhccCCCCCCCCCHHHHHH
Q 005040 660 LVREEQAFSDKMDCLFSIMDLALDCCMDTPHKRIHMTDAAA 700 (717)
Q Consensus 660 ~~~~~~~~~~~~~~~~~l~~li~~cl~~~P~~Rpt~~ev~~ 700 (717)
. .+....++.++.+++.+||+.||++|||+.|+++
T Consensus 227 -~-----~~~~~~~~~~~~~li~~~l~~dp~~Rps~~~~l~ 261 (284)
T 3kk8_A 227 -P-----SPEWDTVTPEAKSLIDSMLTVNPKKRITADQALK 261 (284)
T ss_dssp -C-----TTTTTTSCHHHHHHHHHHSCSSTTTSCCHHHHTT
T ss_pred -C-----chhhcccCHHHHHHHHHHcccChhhCCCHHHHhc
Confidence 0 0011134456889999999999999999999987
No 129
>3hko_A Calcium/calmodulin-dependent protein kinase with domain and 2 calmodulin-like EF...; structural genomics, protist parasite; HET: ANP; 1.80A {Cryptosporidium parvum iowa II}
Probab=100.00 E-value=2.3e-40 Score=348.96 Aligned_cols=259 Identities=23% Similarity=0.287 Sum_probs=202.7
Q ss_pred HHHHhccCCccccccccccEEEEEEEec-CCCeEEEEEechhh-----HHHHHHHHHHHHHHHhcCCCceeeEeeeeecC
Q 005040 422 IRRATDEFNECNLLGTGGFGSVYKGTLS-DGTNVAIKIFNLQL-----ERAFRSFDSECEILRNVRHRNLLKILGSCSNL 495 (717)
Q Consensus 422 ~~~~~~~~~~~~~lg~G~~g~V~~~~~~-~~~~vavK~~~~~~-----~~~~~~~~~e~~~l~~l~hpniv~~~~~~~~~ 495 (717)
+....++|++.+.||+|+||.||+|... +++.||+|++.... ....+.+.+|++++++++||||+++++++.+.
T Consensus 21 ~~~~~~~y~~~~~lG~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~~~~E~~~l~~l~hpniv~~~~~~~~~ 100 (345)
T 3hko_A 21 LLELQKKYHLKGAIGQGSYGVVRVAIENQTRAIRAIKIMNKNKIRQINPKDVERIKTEVRLMKKLHHPNIARLYEVYEDE 100 (345)
T ss_dssp HHHHHHHEEEEEEEEECSSCEEEEEEETTTCCEEEEEEEEHHHHHC---CHHHHHHHHHHHHHHCCCTTBCCEEEEEECS
T ss_pred hhhhhhheeecceeeecCCeEEEEEEECCCCceEEEeehhhhhhcccCHHHHHHHHHHHHHHHhCCCCCcceeehhhccC
Confidence 4566789999999999999999999975 78899999997653 23456789999999999999999999999999
Q ss_pred CeeEEEEEccCCCCHHHHHhhC---------------------------------------CCCCCHHHHHHHHHHHHHH
Q 005040 496 DFKALVLEFMPNGSLEKWLYSH---------------------------------------NYFLDILQRLNIMIDVGSA 536 (717)
Q Consensus 496 ~~~~lv~e~~~~g~L~~~l~~~---------------------------------------~~~~~~~~~~~i~~~i~~~ 536 (717)
+..++||||+++|+|.+++... ...+++..++.++.|++.|
T Consensus 101 ~~~~lv~e~~~gg~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~qi~~~ 180 (345)
T 3hko_A 101 QYICLVMELCHGGHLLDKLNVFIDDSTGKCAMDVVKTQICPCPECNEEAINGSIHGFRESLDFVQREKLISNIMRQIFSA 180 (345)
T ss_dssp SEEEEEEECCCSCBHHHHEEEEEETTTTEEEEEEECCCCCCSHHHHHHHHHSCC--CEEECCHHHHHHHHHHHHHHHHHH
T ss_pred CeEEEEEeCCCCCcHHHHHHHhhcccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHH
Confidence 9999999999999999998521 1123577888999999999
Q ss_pred HHHHhhcCCCCCeEecCCCCCCeeeCCCC--cEEEeeeccccccCCCCC--ceeeeccccCccccCCCccCC--CCcCcc
Q 005040 537 LEYLHHCHSSAPIIHCDLKPTNILLDENM--VAHVSDFGISKLLGEGED--SVIQTMTMATIGYMAPEYGSE--GIVSTK 610 (717)
Q Consensus 537 l~~LH~~~~~~~ivH~dlk~~Nill~~~~--~~kl~Dfgl~~~~~~~~~--~~~~~~~~~t~~y~aPE~~~~--~~~~~~ 610 (717)
|+||| +.+|+||||||+||+++.++ .+||+|||++..+..... ........||+.|+|||++.+ ..++.+
T Consensus 181 l~~LH----~~~ivH~Dlkp~NIll~~~~~~~~kl~Dfg~a~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~ 256 (345)
T 3hko_A 181 LHYLH----NQGICHRDIKPENFLFSTNKSFEIKLVDFGLSKEFYKLNNGEYYGMTTKAGTPYFVAPEVLNTTNESYGPK 256 (345)
T ss_dssp HHHHH----HTTEECCCCCGGGEEESCSSSCCEEECCCTTCEEGGGTTCC--------CCCGGGCCHHHHTCSSSCCCTH
T ss_pred HHHHH----HCCccccCCChhhEEEecCCCceEEEeeccccccccccCccccccccccCCCccccCchhhccCCCCCCcH
Confidence 99999 67899999999999998776 899999999986643221 112345578999999998765 678999
Q ss_pred cchhhHHHHHHHHHhCCCCCCccccCcchHHHHHHhhCCCchhhhccccchhhhhhhhhhHHHHHHHHHHHhhccCCCCC
Q 005040 611 CDVYSYGVLLMETFTEKKPTDEMFTGEMSLRRWVKESLPHRLTEVVDANLVREEQAFSDKMDCLFSIMDLALDCCMDTPH 690 (717)
Q Consensus 611 ~Dvws~G~il~el~tg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~cl~~~P~ 690 (717)
+||||||+++|||++|+.||......+ ........... .. .+....++.++.+++.+||+.||+
T Consensus 257 ~DiwslG~il~el~~g~~pf~~~~~~~-~~~~~~~~~~~------------~~---~~~~~~~~~~~~~li~~~l~~~p~ 320 (345)
T 3hko_A 257 CDAWSAGVLLHLLLMGAVPFPGVNDAD-TISQVLNKKLC------------FE---NPNYNVLSPLARDLLSNLLNRNVD 320 (345)
T ss_dssp HHHHHHHHHHHHHHHSSCSSCCSSHHH-HHHHHHHCCCC------------TT---SGGGGGSCHHHHHHHHHHSCSCTT
T ss_pred HHHHHHHHHHHHHHHCCCCCCCCChHH-HHHHHHhcccc------------cC---CcccccCCHHHHHHHHHHcCCChh
Confidence 999999999999999999997632211 11111111100 00 011123456788999999999999
Q ss_pred CCCCHHHHHH
Q 005040 691 KRIHMTDAAA 700 (717)
Q Consensus 691 ~Rpt~~ev~~ 700 (717)
+|||+.|+++
T Consensus 321 ~Rps~~~~l~ 330 (345)
T 3hko_A 321 ERFDAMRALQ 330 (345)
T ss_dssp TSCCHHHHHH
T ss_pred HCCCHHHHhc
Confidence 9999999987
No 130
>3uc3_A Serine/threonine-protein kinase SRK2I; SNRK2, ABA signaling, transferase; 1.90A {Arabidopsis thaliana} PDB: 3zut_A 3zuu_A 3uc4_A 3ujg_A 3udb_A
Probab=100.00 E-value=1.6e-40 Score=351.28 Aligned_cols=253 Identities=22% Similarity=0.263 Sum_probs=194.1
Q ss_pred hccCCccccccccccEEEEEEEec-CCCeEEEEEechhhHHHHHHHHHHHHHHHhcCCCceeeEeeeeecCCeeEEEEEc
Q 005040 426 TDEFNECNLLGTGGFGSVYKGTLS-DGTNVAIKIFNLQLERAFRSFDSECEILRNVRHRNLLKILGSCSNLDFKALVLEF 504 (717)
Q Consensus 426 ~~~~~~~~~lg~G~~g~V~~~~~~-~~~~vavK~~~~~~~~~~~~~~~e~~~l~~l~hpniv~~~~~~~~~~~~~lv~e~ 504 (717)
.++|++.+.||+|+||.||+|+.. +++.||||++..... ..+.+.+|+.+++.++||||+++++++.+.+..++||||
T Consensus 19 ~~~y~~~~~lG~G~~g~V~~~~~~~~~~~vavK~~~~~~~-~~~~~~~E~~~l~~l~hpniv~~~~~~~~~~~~~lv~e~ 97 (361)
T 3uc3_A 19 SDRYDFVKDIGSGNFGVARLMRDKLTKELVAVKYIERGAA-IDENVQREIINHRSLRHPNIVRFKEVILTPTHLAIIMEY 97 (361)
T ss_dssp TTTEEEEEEESSSTTSSEEEEEETTTCCEEEEEEEESSTT-SCHHHHHHHHHHHHCCCTTBCCEEEEEECSSEEEEEEEC
T ss_pred CCcEEEEEEeccCCCEEEEEEEECCCCcEEEEEEEecCcc-ccHHHHHHHHHHHhCCCCCCCcEEEEEeeCCEEEEEEEe
Confidence 468999999999999999999976 789999999975432 225677899999999999999999999999999999999
Q ss_pred cCCCCHHHHHhhCCCCCCHHHHHHHHHHHHHHHHHHhhcCCCCCeEecCCCCCCeeeCCCCc--EEEeeeccccccCCCC
Q 005040 505 MPNGSLEKWLYSHNYFLDILQRLNIMIDVGSALEYLHHCHSSAPIIHCDLKPTNILLDENMV--AHVSDFGISKLLGEGE 582 (717)
Q Consensus 505 ~~~g~L~~~l~~~~~~~~~~~~~~i~~~i~~~l~~LH~~~~~~~ivH~dlk~~Nill~~~~~--~kl~Dfgl~~~~~~~~ 582 (717)
+++|+|.+++...+ .+++..+..++.|++.||+||| +.+|+||||||+||+++.++. +||+|||+++......
T Consensus 98 ~~~~~L~~~l~~~~-~~~~~~~~~i~~ql~~~L~~LH----~~~ivH~Dlkp~Nill~~~~~~~~kl~Dfg~a~~~~~~~ 172 (361)
T 3uc3_A 98 ASGGELYERICNAG-RFSEDEARFFFQQLLSGVSYCH----SMQICHRDLKLENTLLDGSPAPRLKICDFGYSKSSVLHS 172 (361)
T ss_dssp CCSCBHHHHHHHHS-SCCHHHHHHHHHHHHHHHHHHH----HTTCCSCCCCGGGEEECSSSSCCEEECCCCCC-------
T ss_pred CCCCCHHHHHHhcC-CCCHHHHHHHHHHHHHHHHHHH----HCCcccCCCCHHHEEEcCCCCceEEEeecCccccccccC
Confidence 99999999997654 3899999999999999999999 678999999999999987765 9999999997543221
Q ss_pred CceeeeccccCccccCCCccCCCCcCcc-cchhhHHHHHHHHHhCCCCCCccccCcchHHHHHHhhCCCchhhhccccch
Q 005040 583 DSVIQTMTMATIGYMAPEYGSEGIVSTK-CDVYSYGVLLMETFTEKKPTDEMFTGEMSLRRWVKESLPHRLTEVVDANLV 661 (717)
Q Consensus 583 ~~~~~~~~~~t~~y~aPE~~~~~~~~~~-~Dvws~G~il~el~tg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 661 (717)
......||+.|+|||++.+..++.+ +||||+||++|||++|+.||....... ............. .
T Consensus 173 ---~~~~~~gt~~y~aPE~~~~~~~~~~~~DiwslG~il~ell~g~~Pf~~~~~~~-~~~~~~~~~~~~~--------~- 239 (361)
T 3uc3_A 173 ---QPKSTVGTPAYIAPEVLLRQEYDGKIADVWSCGVTLYVMLVGAYPFEDPEEPR-DYRKTIQRILSVK--------Y- 239 (361)
T ss_dssp -----------CTTSCHHHHHCSSCCHHHHHHHHHHHHHHHHHHSSCSCC----CC-CHHHHHHHHHTTC--------C-
T ss_pred ---CCCCCcCCCCcCChhhhcCCCCCCCeeeeehhHHHHHHHHhCCCCCCCCccHH-HHHHHHHHHhcCC--------C-
Confidence 2234468999999999877777655 999999999999999999997643222 1222211111100 0
Q ss_pred hhhhhhhhhHHHHHHHHHHHhhccCCCCCCCCCHHHHHHH
Q 005040 662 REEQAFSDKMDCLFSIMDLALDCCMDTPHKRIHMTDAAAK 701 (717)
Q Consensus 662 ~~~~~~~~~~~~~~~l~~li~~cl~~~P~~Rpt~~ev~~~ 701 (717)
..+....++.++.+++.+||+.||++|||+.|+++.
T Consensus 240 ----~~~~~~~~s~~~~~li~~~L~~dP~~Rps~~ell~h 275 (361)
T 3uc3_A 240 ----SIPDDIRISPECCHLISRIFVADPATRISIPEIKTH 275 (361)
T ss_dssp ----CCCTTSCCCHHHHHHHHHHSCSCTTTSCCHHHHHTS
T ss_pred ----CCCCcCCCCHHHHHHHHHHccCChhHCcCHHHHHhC
Confidence 011111234568899999999999999999999864
No 131
>3ork_A Serine/threonine protein kinase; structural genomics, TB structural genomics consortium, TBSG domain, signal transduction; HET: AGS; 1.60A {Mycobacterium tuberculosis} PDB: 3ori_A* 3orl_A* 3oro_A* 3orp_A* 3ort_A* 3f61_A* 1mru_A* 3f69_A* 3orm_A* 1o6y_A* 2fum_A*
Probab=100.00 E-value=2.7e-41 Score=350.45 Aligned_cols=261 Identities=22% Similarity=0.373 Sum_probs=198.4
Q ss_pred hccCCccccccccccEEEEEEEe-cCCCeEEEEEechhh---HHHHHHHHHHHHHHHhcCCCceeeEeeeeecCCe----
Q 005040 426 TDEFNECNLLGTGGFGSVYKGTL-SDGTNVAIKIFNLQL---ERAFRSFDSECEILRNVRHRNLLKILGSCSNLDF---- 497 (717)
Q Consensus 426 ~~~~~~~~~lg~G~~g~V~~~~~-~~~~~vavK~~~~~~---~~~~~~~~~e~~~l~~l~hpniv~~~~~~~~~~~---- 497 (717)
.++|++.+.||+|+||.||+|+. .+++.||||++.... ......+.+|++++++++||||+++++++.....
T Consensus 11 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~E~~~l~~l~hp~iv~~~~~~~~~~~~~~~ 90 (311)
T 3ork_A 11 SDRYELGEILGFGGMSEVHLARDLRDHRDVAVKVLRADLARDPSFYLRFRREAQNAAALNHPAIVAVYDTGEAETPAGPL 90 (311)
T ss_dssp TTTEEEEEEEEECSSEEEEEEEETTTTEEEEEEEECTTTTTSHHHHHHHHHHHTTCCCCCCTTBCCEEEEEEEEETTEEE
T ss_pred cCcEEEEEEEccCCCEEEEEEEECCCCceEEEEEeCccccCCHHHHHHHHHHHHHHHcCCCCCcceEEEeeeccCCCCcc
Confidence 46899999999999999999997 478999999997643 3345678899999999999999999999866543
Q ss_pred eEEEEEccCCCCHHHHHhhCCCCCCHHHHHHHHHHHHHHHHHHhhcCCCCCeEecCCCCCCeeeCCCCcEEEeeeccccc
Q 005040 498 KALVLEFMPNGSLEKWLYSHNYFLDILQRLNIMIDVGSALEYLHHCHSSAPIIHCDLKPTNILLDENMVAHVSDFGISKL 577 (717)
Q Consensus 498 ~~lv~e~~~~g~L~~~l~~~~~~~~~~~~~~i~~~i~~~l~~LH~~~~~~~ivH~dlk~~Nill~~~~~~kl~Dfgl~~~ 577 (717)
.|+||||+++|+|.++++..+ .+++..+..++.|++.||+||| +.+|+||||||+||+++.++.+||+|||++..
T Consensus 91 ~~lv~e~~~g~~L~~~l~~~~-~~~~~~~~~~~~qi~~~l~~lH----~~~ivH~dlkp~Nil~~~~~~~kl~Dfg~a~~ 165 (311)
T 3ork_A 91 PYIVMEYVDGVTLRDIVHTEG-PMTPKRAIEVIADACQALNFSH----QNGIIHRDVKPANIMISATNAVKVMDFGIARA 165 (311)
T ss_dssp EEEEEECCCEEEHHHHHHHHC-SCCHHHHHHHHHHHHHHHHHHH----HTTCCCCCCCGGGEEEETTSCEEECCCSCC--
T ss_pred cEEEEecCCCCCHHHHHHhcC-CCCHHHHHHHHHHHHHHHHHHH----HCCCCcCCCCHHHEEEcCCCCEEEeeccCccc
Confidence 499999999999999998654 4899999999999999999999 67899999999999999999999999999987
Q ss_pred cCCCCCc-eeeeccccCccccCCCccCCCCcCcccchhhHHHHHHHHHhCCCCCCccccCcchHHHHHHhhCCCchhhhc
Q 005040 578 LGEGEDS-VIQTMTMATIGYMAPEYGSEGIVSTKCDVYSYGVLLMETFTEKKPTDEMFTGEMSLRRWVKESLPHRLTEVV 656 (717)
Q Consensus 578 ~~~~~~~-~~~~~~~~t~~y~aPE~~~~~~~~~~~Dvws~G~il~el~tg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~ 656 (717)
....... .......||+.|+|||++.+..++.++||||||+++|||++|+.||........ ........ ...
T Consensus 166 ~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Di~slG~~l~~ll~g~~pf~~~~~~~~-~~~~~~~~-~~~----- 238 (311)
T 3ork_A 166 IADSGNSVTQTAAVIGTAQYLSPEQARGDSVDARSDVYSLGCVLYEVLTGEPPFTGDSPVSV-AYQHVRED-PIP----- 238 (311)
T ss_dssp ----------------CCTTCCHHHHHTCCCCHHHHHHHHHHHHHHHHHSSCSCCCSSHHHH-HHHHHHCC-CCC-----
T ss_pred ccccccccccccccCcCcccCCHHHhcCCCCCchHhHHHHHHHHHHHHhCCCCCCCCChHHH-HHHHhcCC-CCC-----
Confidence 6543222 122344689999999999999999999999999999999999999976322111 01111100 000
Q ss_pred cccchhhhhhhhhhHHHHHHHHHHHhhccCCCCCCCCCHH-HHHHHHHHhHH
Q 005040 657 DANLVREEQAFSDKMDCLFSIMDLALDCCMDTPHKRIHMT-DAAAKLRKIKA 707 (717)
Q Consensus 657 ~~~~~~~~~~~~~~~~~~~~l~~li~~cl~~~P~~Rpt~~-ev~~~L~~~~~ 707 (717)
.......++.++.+++.+||+.||++||++. ++.+.+.++..
T Consensus 239 ---------~~~~~~~~~~~l~~li~~~l~~dP~~R~~~~~~l~~~l~~~~~ 281 (311)
T 3ork_A 239 ---------PSARHEGLSADLDAVVLKALAKNPENRYQTAAEMRADLVRVHN 281 (311)
T ss_dssp ---------HHHHSTTCCHHHHHHHHHHTCSSGGGSCSSHHHHHHHHHHHHT
T ss_pred ---------cccccCCCCHHHHHHHHHHHhcCHhhChhhHHHHHHHHHHHhc
Confidence 0011123456788999999999999999654 55566665543
No 132
>4hgt_A Casein kinase I isoform delta; CK1D, inhibitor, transferase-transferase inhibitor C; HET: 15G; 1.80A {Homo sapiens} PDB: 3uys_A* 3uyt_A* 3uzp_A* 4hnf_A* 1cki_A 1ckj_A 4hni_A* 4hok_A
Probab=100.00 E-value=4.7e-40 Score=338.79 Aligned_cols=265 Identities=19% Similarity=0.217 Sum_probs=207.5
Q ss_pred HhccCCccccccccccEEEEEEEe-cCCCeEEEEEechhhHHHHHHHHHHHHHHHhcCCCceeeEeeee-ecCCeeEEEE
Q 005040 425 ATDEFNECNLLGTGGFGSVYKGTL-SDGTNVAIKIFNLQLERAFRSFDSECEILRNVRHRNLLKILGSC-SNLDFKALVL 502 (717)
Q Consensus 425 ~~~~~~~~~~lg~G~~g~V~~~~~-~~~~~vavK~~~~~~~~~~~~~~~e~~~l~~l~hpniv~~~~~~-~~~~~~~lv~ 502 (717)
..++|++.+.||+|+||.||+|.. .+++.||||++..... .+.+.+|+++++.++|++++..++++ .+....++||
T Consensus 7 ~~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~--~~~~~~e~~~l~~l~~~~~i~~~~~~~~~~~~~~lv~ 84 (296)
T 4hgt_A 7 VGNRYRLGRKIGSGSFGDIYLGTDIAAGEEVAIKLECVKTK--HPQLHIESKIYKMMQGGVGIPTIRWCGAEGDYNVMVM 84 (296)
T ss_dssp ----CEEEEEEEECSSSEEEEEEETTTTEEEEEEEEEC-----CCCHHHHHHHHHHHTTSTTCCCEEEEEEETTEEEEEE
T ss_pred cCCceEEeeeecCCCCeEEEEEEEcCCCceEEEEeeccccc--chHHHHHHHHHHHhcCCCCCCeeeeecCCCCceEEEE
Confidence 457899999999999999999996 4789999998754432 24577899999999988777666655 6677889999
Q ss_pred EccCCCCHHHHHhhCCCCCCHHHHHHHHHHHHHHHHHHhhcCCCCCeEecCCCCCCeee---CCCCcEEEeeeccccccC
Q 005040 503 EFMPNGSLEKWLYSHNYFLDILQRLNIMIDVGSALEYLHHCHSSAPIIHCDLKPTNILL---DENMVAHVSDFGISKLLG 579 (717)
Q Consensus 503 e~~~~g~L~~~l~~~~~~~~~~~~~~i~~~i~~~l~~LH~~~~~~~ivH~dlk~~Nill---~~~~~~kl~Dfgl~~~~~ 579 (717)
||+ +++|.+++......+++..+..++.|++.||.||| +.+|+||||||+||++ +.++.+||+|||++....
T Consensus 85 e~~-~~~L~~~~~~~~~~~~~~~~~~i~~qi~~~l~~LH----~~~ivH~Dlkp~NIl~~~~~~~~~~kL~Dfg~a~~~~ 159 (296)
T 4hgt_A 85 ELL-GPSLEDLFNFCSRKFSLKTVLLLADQMISRIEYIH----SKNFIHRDVKPDNFLMGLGKKGNLVYIIDFGLAKKYR 159 (296)
T ss_dssp ECC-CCBHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHHH----HTTEECSCCSGGGEEECCGGGTTCEEECCCTTCEECB
T ss_pred Ecc-CCCHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHH----HCCeecCCCCHHHeeeeccCCCCeEEEecCccceecc
Confidence 999 89999999976667999999999999999999999 6789999999999999 789999999999998775
Q ss_pred CCCCc-----eeeeccccCccccCCCccCCCCcCcccchhhHHHHHHHHHhCCCCCCccccCc--chHHHHHHhhCCCch
Q 005040 580 EGEDS-----VIQTMTMATIGYMAPEYGSEGIVSTKCDVYSYGVLLMETFTEKKPTDEMFTGE--MSLRRWVKESLPHRL 652 (717)
Q Consensus 580 ~~~~~-----~~~~~~~~t~~y~aPE~~~~~~~~~~~Dvws~G~il~el~tg~~p~~~~~~~~--~~~~~~~~~~~~~~~ 652 (717)
..... .......||+.|+|||.+.+..++.++|||||||++|||++|+.||....... ..........
T Consensus 160 ~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~g~~pf~~~~~~~~~~~~~~~~~~~----- 234 (296)
T 4hgt_A 160 DARTHQHIPYRENKNLTGTARYASINTHLGIEQSRRDDLESLGYVLMYFNLGSLPWQGLKAATKRQKYERISEKK----- 234 (296)
T ss_dssp CTTTCCBCCCCCSCCCCSCGGGCCHHHHTTCCCCHHHHHHHHHHHHHHHHHSSCTTSSCCCSSSSSHHHHHHHHH-----
T ss_pred CcccCccCCCCcccccCCCccccchHHhcCCCCCchhHHHHHHHHHHHHhcCCCCCcccchhhhhhhhhhhhccc-----
Confidence 44321 12234578999999999999999999999999999999999999997643221 1111111110
Q ss_pred hhhccccchhhhhhhhhhHHHHHHHHHHHhhccCCCCCCCCCHHHHHHHHHHhHHhhc
Q 005040 653 TEVVDANLVREEQAFSDKMDCLFSIMDLALDCCMDTPHKRIHMTDAAAKLRKIKAKFL 710 (717)
Q Consensus 653 ~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~cl~~~P~~Rpt~~ev~~~L~~~~~~~~ 710 (717)
..... ......++.++.+++.+||+.||++|||++++++.|+++.....
T Consensus 235 -------~~~~~--~~~~~~~~~~l~~li~~~l~~~p~~Rpt~~~l~~~l~~~~~~~~ 283 (296)
T 4hgt_A 235 -------MSTPI--EVLCKGYPSEFATYLNFCRSLRFDDKPDYSYLRQLFRNLFHRQG 283 (296)
T ss_dssp -------HHSCH--HHHTTTSCHHHHHHHHHHHTSCTTCCCCHHHHHHHHHHHHHHHT
T ss_pred -------ccchh--hhhhccCCHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHhC
Confidence 00000 00012345678999999999999999999999999999977554
No 133
>3kfa_A Tyrosine-protein kinase ABL1; CML, drug resistance, inhibitor, ATP-binding, nucleotide-binding, oncogene, TRAN; HET: B91; 1.22A {Mus musculus} SCOP: d.144.1.7 PDB: 2qoh_A* 3kf4_A* 3k5v_A* 1fpu_A* 1m52_A* 1iep_A* 2hzn_A* 1opj_A* 3ms9_A* 3mss_A* 3ik3_A* 2z60_A* 2e2b_A* 3pyy_A* 3oxz_A* 2g1t_A* 3ue4_A* 3oy3_A* 2hiw_A* 2v7a_A* ...
Probab=100.00 E-value=1.1e-40 Score=341.99 Aligned_cols=259 Identities=25% Similarity=0.396 Sum_probs=214.9
Q ss_pred HhccCCccccccccccEEEEEEEec-CCCeEEEEEechhhHHHHHHHHHHHHHHHhcCCCceeeEeeeeecCCeeEEEEE
Q 005040 425 ATDEFNECNLLGTGGFGSVYKGTLS-DGTNVAIKIFNLQLERAFRSFDSECEILRNVRHRNLLKILGSCSNLDFKALVLE 503 (717)
Q Consensus 425 ~~~~~~~~~~lg~G~~g~V~~~~~~-~~~~vavK~~~~~~~~~~~~~~~e~~~l~~l~hpniv~~~~~~~~~~~~~lv~e 503 (717)
...+|++.+.||+|+||.||+|.+. +++.||+|++.... ...+.+.+|++++++++||||+++++++.+....++|||
T Consensus 11 ~~~~~~~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~-~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~~~~~~~v~e 89 (288)
T 3kfa_A 11 ERTDITMKHKLGGGQYGEVYEGVWKKYSLTVAVKTLKEDT-MEVEEFLKEAAVMKEIKHPNLVQLLGVCTREPPFYIITE 89 (288)
T ss_dssp CGGGEEEEEESGGGTTCSEEEEEEGGGTEEEEEEEECSCS-THHHHHHHHHHHHHHCCCTTBCCEEEEECSSSSEEEEEE
T ss_pred cccceeEEeecCCCCceeEEEeEecCCCEEEEEEecCcCH-HHHHHHHHHHHHHHhCCCCCEeeEEEEEccCCCEEEEEE
Confidence 4578999999999999999999976 58899999987543 334678899999999999999999999999999999999
Q ss_pred ccCCCCHHHHHhhC-CCCCCHHHHHHHHHHHHHHHHHHhhcCCCCCeEecCCCCCCeeeCCCCcEEEeeeccccccCCCC
Q 005040 504 FMPNGSLEKWLYSH-NYFLDILQRLNIMIDVGSALEYLHHCHSSAPIIHCDLKPTNILLDENMVAHVSDFGISKLLGEGE 582 (717)
Q Consensus 504 ~~~~g~L~~~l~~~-~~~~~~~~~~~i~~~i~~~l~~LH~~~~~~~ivH~dlk~~Nill~~~~~~kl~Dfgl~~~~~~~~ 582 (717)
|+++++|.+++... ...+++..+..++.|++.||.||| +.+|+||||||+||+++.++.+||+|||++.......
T Consensus 90 ~~~~~~L~~~~~~~~~~~~~~~~~~~i~~~i~~~l~~lH----~~~i~H~dikp~Nil~~~~~~~~l~Dfg~~~~~~~~~ 165 (288)
T 3kfa_A 90 FMTYGNLLDYLRECNRQEVSAVVLLYMATQISSAMEYLE----KKNFIHRDLAARNCLVGENHLVKVADFGLSRLMTGDT 165 (288)
T ss_dssp CCTTEEHHHHHHHCCTTTSCHHHHHHHHHHHHHHHHHHH----HHTCCCSCCSGGGEEECGGGCEEECCCCGGGTSCSSS
T ss_pred cCCCCcHHHHHHhcccCCccHhHHHHHHHHHHHHHHHHH----HCCccCCCCCcceEEEcCCCCEEEccCccceeccCCc
Confidence 99999999999864 345899999999999999999999 5789999999999999999999999999998765433
Q ss_pred CceeeeccccCccccCCCccCCCCcCcccchhhHHHHHHHHHh-CCCCCCccccCcchHHHHHHhhCCCchhhhccccch
Q 005040 583 DSVIQTMTMATIGYMAPEYGSEGIVSTKCDVYSYGVLLMETFT-EKKPTDEMFTGEMSLRRWVKESLPHRLTEVVDANLV 661 (717)
Q Consensus 583 ~~~~~~~~~~t~~y~aPE~~~~~~~~~~~Dvws~G~il~el~t-g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 661 (717)
........+|+.|+|||.+.+..++.++||||+|+++|||++ |..||...... .....+......
T Consensus 166 -~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~ll~~g~~p~~~~~~~--~~~~~~~~~~~~----------- 231 (288)
T 3kfa_A 166 -YTAHAGAKFPIKWTAPESLAYNKFSIKSDVWAFGVLLWEIATYGMSPYPGIDLS--QVYELLEKDYRM----------- 231 (288)
T ss_dssp -SEEETTEEECGGGCCHHHHHHCCCCHHHHHHHHHHHHHHHHTTSCCSSTTCCGG--GHHHHHHTTCCC-----------
T ss_pred -cccccCCccccCcCChhhhccCCCCchhhHHHHHHHHHHHHhCCCCCCCCCCHH--HHHHHHhccCCC-----------
Confidence 223344457889999999988899999999999999999999 99998763222 222222211110
Q ss_pred hhhhhhhhhHHHHHHHHHHHhhccCCCCCCCCCHHHHHHHHHHhHHh
Q 005040 662 REEQAFSDKMDCLFSIMDLALDCCMDTPHKRIHMTDAAAKLRKIKAK 708 (717)
Q Consensus 662 ~~~~~~~~~~~~~~~l~~li~~cl~~~P~~Rpt~~ev~~~L~~~~~~ 708 (717)
.....++..+.+++.+|++.||++|||+.|+++.|+++...
T Consensus 232 ------~~~~~~~~~l~~li~~~l~~dp~~Rps~~~~~~~l~~~~~~ 272 (288)
T 3kfa_A 232 ------ERPEGCPEKVYELMRACWQWNPSDRPSFAEIHQAFETMFQE 272 (288)
T ss_dssp ------CCCTTCCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHHHH
T ss_pred ------CCCCCCCHHHHHHHHHHhCCChhhCcCHHHHHHHHHHHHHh
Confidence 11123456688999999999999999999999999998654
No 134
>3fdn_A Serine/threonine-protein kinase 6; aurora kinase inhibitors, virtual screening, X-RAY CO- crystal analysis, structure-based drug design (SBDD); HET: MMH; 1.90A {Homo sapiens} SCOP: d.144.1.7 PDB: 3k5u_A* 3m11_A* 2c6e_A* 1muo_A* 2bmc_A* 2j4z_A* 1ol6_A* 3up2_A* 3unz_A* 3uo5_A* 3uo6_A* 3uod_A* 3uoh_A* 3uoj_A* 3uok_A* 3uo4_A* 3uol_A* 3up7_A* 4dea_A* 4deb_A* ...
Probab=100.00 E-value=3.2e-40 Score=336.86 Aligned_cols=248 Identities=25% Similarity=0.334 Sum_probs=202.0
Q ss_pred HhccCCccccccccccEEEEEEEec-CCCeEEEEEechhh---HHHHHHHHHHHHHHHhcCCCceeeEeeeeecCCeeEE
Q 005040 425 ATDEFNECNLLGTGGFGSVYKGTLS-DGTNVAIKIFNLQL---ERAFRSFDSECEILRNVRHRNLLKILGSCSNLDFKAL 500 (717)
Q Consensus 425 ~~~~~~~~~~lg~G~~g~V~~~~~~-~~~~vavK~~~~~~---~~~~~~~~~e~~~l~~l~hpniv~~~~~~~~~~~~~l 500 (717)
+.++|++.+.||+|+||.||+|... +++.||+|++.... ....+.+.+|++++++++||||+++++++.+.+..++
T Consensus 7 ~~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~l 86 (279)
T 3fdn_A 7 ALEDFEIGRPLGKGKFGNVYLAREKQSKFILALKVLFKAQLEKAGVEHQLRREVEIQSHLRHPNILRLYGYFHDATRVYL 86 (279)
T ss_dssp CGGGEEEEEEEEECSSEEEEEEEETTTCCEEEEEEEEHHHHHHHTCHHHHHHHHHHHTTCCCTTBCCEEEEEECSSEEEE
T ss_pred ecccEEEeeEEecCCCeEEEEEEEccCCcEEEEEEEeccccchhhHHHHHHHHHHHHHcCCCCCCcchhheEecCCEEEE
Confidence 3478999999999999999999876 67899999997553 2234668899999999999999999999999999999
Q ss_pred EEEccCCCCHHHHHhhCCCCCCHHHHHHHHHHHHHHHHHHhhcCCCCCeEecCCCCCCeeeCCCCcEEEeeeccccccCC
Q 005040 501 VLEFMPNGSLEKWLYSHNYFLDILQRLNIMIDVGSALEYLHHCHSSAPIIHCDLKPTNILLDENMVAHVSDFGISKLLGE 580 (717)
Q Consensus 501 v~e~~~~g~L~~~l~~~~~~~~~~~~~~i~~~i~~~l~~LH~~~~~~~ivH~dlk~~Nill~~~~~~kl~Dfgl~~~~~~ 580 (717)
||||+++|+|.+++.... .+++..+..++.|++.||.||| +.+|+||||||+||+++.++.++|+|||++.....
T Consensus 87 v~e~~~~~~l~~~l~~~~-~~~~~~~~~~~~qi~~~l~~LH----~~~i~H~dlkp~Nili~~~~~~~l~Dfg~~~~~~~ 161 (279)
T 3fdn_A 87 ILEYAPLGTVYRELQKLS-KFDEQRTATYITELANALSYCH----SKRVIHRDIKPENLLLGSAGELKIADFGWSVHAPS 161 (279)
T ss_dssp EECCCTTEEHHHHHHHHS-SCCHHHHHHHHHHHHHHHHHHH----TTTCEECCCCGGGEEECTTSCEEECSCCEESCC--
T ss_pred EEecCCCCcHHHHHHhcC-CCCHHHHHHHHHHHHHHHHHHH----hCCEecccCChHhEEEcCCCCEEEEeccccccCCc
Confidence 999999999999998654 3899999999999999999999 68999999999999999999999999999865433
Q ss_pred CCCceeeeccccCccccCCCccCCCCcCcccchhhHHHHHHHHHhCCCCCCccccCcchHHHHHHhhCCCchhhhccccc
Q 005040 581 GEDSVIQTMTMATIGYMAPEYGSEGIVSTKCDVYSYGVLLMETFTEKKPTDEMFTGEMSLRRWVKESLPHRLTEVVDANL 660 (717)
Q Consensus 581 ~~~~~~~~~~~~t~~y~aPE~~~~~~~~~~~Dvws~G~il~el~tg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 660 (717)
.. .....||+.|+|||.+.+..++.++||||+|+++|||++|+.||...... .....+... ..
T Consensus 162 ~~----~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~g~~p~~~~~~~--~~~~~~~~~-~~---------- 224 (279)
T 3fdn_A 162 SR----RTDLCGTLDYLPPEMIEGRMHDEKVDLWSLGVLCYEFLVGKPPFEANTYQ--ETYKRISRV-EF---------- 224 (279)
T ss_dssp ----------CCCCTTCCHHHHTTCCCCTTHHHHHHHHHHHHHHHSSCTTCCSSHH--HHHHHHHHT-CC----------
T ss_pred cc----ccccCCCCCccCHhHhccCCCCccchhHhHHHHHHHHHHCCCCCCCCcHH--HHHHHHHhC-CC----------
Confidence 22 23446899999999999999999999999999999999999999753211 111111100 00
Q ss_pred hhhhhhhhhhHHHHHHHHHHHhhccCCCCCCCCCHHHHHHH
Q 005040 661 VREEQAFSDKMDCLFSIMDLALDCCMDTPHKRIHMTDAAAK 701 (717)
Q Consensus 661 ~~~~~~~~~~~~~~~~l~~li~~cl~~~P~~Rpt~~ev~~~ 701 (717)
..+..++..+.+++.+||+.||++|||+.|+++.
T Consensus 225 -------~~~~~~~~~~~~li~~~l~~~p~~Rps~~e~l~h 258 (279)
T 3fdn_A 225 -------TFPDFVTEGARDLISRLLKHNPSQRPMLREVLEH 258 (279)
T ss_dssp -------CCCTTSCHHHHHHHHHHCCSSGGGSCCHHHHHHC
T ss_pred -------CCCCcCCHHHHHHHHHHhccChhhCCCHHHHhhC
Confidence 0011234567899999999999999999999874
No 135
>3qd2_B Eukaryotic translation initiation factor 2-alpha; EIF2A kinase, phosphoryalation, gene regulation; HET: TPO; 2.81A {Mus musculus}
Probab=100.00 E-value=2e-40 Score=347.57 Aligned_cols=250 Identities=24% Similarity=0.355 Sum_probs=197.5
Q ss_pred hccCCccccccccccEEEEEEEec-CCCeEEEEEechhh-HHHHHHHHHHHHHHHhcCCCceeeEeeeeecCC-------
Q 005040 426 TDEFNECNLLGTGGFGSVYKGTLS-DGTNVAIKIFNLQL-ERAFRSFDSECEILRNVRHRNLLKILGSCSNLD------- 496 (717)
Q Consensus 426 ~~~~~~~~~lg~G~~g~V~~~~~~-~~~~vavK~~~~~~-~~~~~~~~~e~~~l~~l~hpniv~~~~~~~~~~------- 496 (717)
.++|++.+.||+|+||.||+|+.+ +++.||||++.... ....+.+.+|++++++++||||+++++++.+..
T Consensus 5 ~~~y~~~~~lG~G~~g~V~~a~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~hpniv~~~~~~~~~~~~~~~~~ 84 (332)
T 3qd2_B 5 LTDFEPIQCMGRGGFGVVFEAKNKVDDCNYAIKRIRLPNRELAREKVMREVKALAKLEHPGIVRYFNAWLETPPEKWQEE 84 (332)
T ss_dssp HHHEEEEEEEECC-CSEEEEEEETTTCCEEEEEEEECCSTTTHHHHHHHHHHHHTSCCCTTBCCEEEEEEECCSCHHHHH
T ss_pred hhcCceeeEecCCCCeEEEEEEEcCCCcEEEEEEeecCCchhHHHHHHHHHHHHHhCCCCCEeeEEEEEEEeccchhhhh
Confidence 468999999999999999999986 89999999986433 334577899999999999999999999885433
Q ss_pred --------------------------------------------------eeEEEEEccCCCCHHHHHhhCC--CCCCHH
Q 005040 497 --------------------------------------------------FKALVLEFMPNGSLEKWLYSHN--YFLDIL 524 (717)
Q Consensus 497 --------------------------------------------------~~~lv~e~~~~g~L~~~l~~~~--~~~~~~ 524 (717)
..++||||+++|+|.+++.... ...++.
T Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lv~e~~~~~~L~~~~~~~~~~~~~~~~ 164 (332)
T 3qd2_B 85 MDEIWLKDESTDWPLSSPSPMDAPSVKIRRMDPFSTKNTVGQLQPSSPKVYLYIQMQLCRKENLKDWMNRRCSLEDREHG 164 (332)
T ss_dssp HHC--------------------------------------------CCCEEEEEEECCCSSCHHHHHHTCCSGGGSCHH
T ss_pred hhhhhhccccccccccCCCcccccccceeeccccCcccccccccCCCCCceEEEEEEecCCCCHHHHHhcccCccchhhH
Confidence 3799999999999999998653 235677
Q ss_pred HHHHHHHHHHHHHHHHhhcCCCCCeEecCCCCCCeeeCCCCcEEEeeeccccccCCCCCc----------eeeeccccCc
Q 005040 525 QRLNIMIDVGSALEYLHHCHSSAPIIHCDLKPTNILLDENMVAHVSDFGISKLLGEGEDS----------VIQTMTMATI 594 (717)
Q Consensus 525 ~~~~i~~~i~~~l~~LH~~~~~~~ivH~dlk~~Nill~~~~~~kl~Dfgl~~~~~~~~~~----------~~~~~~~~t~ 594 (717)
.+..++.|++.||+||| +.+|+||||||+||+++.++.+||+|||+++........ .......||+
T Consensus 165 ~~~~i~~qi~~aL~~LH----~~~ivH~Dlkp~NIll~~~~~~kL~DfG~a~~~~~~~~~~~~~~~~~~~~~~~~~~gt~ 240 (332)
T 3qd2_B 165 VCLHIFIQIAEAVEFLH----SKGLMHRDLKPSNIFFTMDDVVKVGDFGLVTAMDQDEEEQTVLTPMPAYATHTGQVGTK 240 (332)
T ss_dssp HHHHHHHHHHHHHHHHH----HTTEECCCCCGGGEEECTTCCEEECCCTTCEECSCC--------------CCCSCC-CG
T ss_pred HHHHHHHHHHHHHHHHH----hCCeeecCCCcccEEEeCCCCEEEeecCcccccccchhhccccccccccccccccCCCc
Confidence 78999999999999999 678999999999999999999999999999887544211 1223446899
Q ss_pred cccCCCccCCCCcCcccchhhHHHHHHHHHhCCCCCCccccCcchHHHHHHhhCCCchhhhccccchhhhhhhhhhHHHH
Q 005040 595 GYMAPEYGSEGIVSTKCDVYSYGVLLMETFTEKKPTDEMFTGEMSLRRWVKESLPHRLTEVVDANLVREEQAFSDKMDCL 674 (717)
Q Consensus 595 ~y~aPE~~~~~~~~~~~Dvws~G~il~el~tg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 674 (717)
.|+|||++.+..++.++||||+|+++|||++|..|+... ....... ...... ......+
T Consensus 241 ~y~aPE~~~~~~~~~~~Di~slG~il~el~~~~~~~~~~-------~~~~~~~--------~~~~~~------~~~~~~~ 299 (332)
T 3qd2_B 241 LYMSPEQIHGNNYSHKVDIFSLGLILFELLYSFSTQMER-------VRIITDV--------RNLKFP------LLFTQKY 299 (332)
T ss_dssp GGSCHHHHHCCCCCTHHHHHHHHHHHHHHHSCCCCHHHH-------HHHHHHH--------HTTCCC------HHHHHHC
T ss_pred CccChHHhcCCCCcchhhHHHHHHHHHHHHHcCCChhHH-------HHHHHHh--------hccCCC------cccccCC
Confidence 999999999999999999999999999999987774321 0111100 000000 1112334
Q ss_pred HHHHHHHhhccCCCCCCCCCHHHHHH
Q 005040 675 FSIMDLALDCCMDTPHKRIHMTDAAA 700 (717)
Q Consensus 675 ~~l~~li~~cl~~~P~~Rpt~~ev~~ 700 (717)
.++.+++.+||+.||++|||+.|+++
T Consensus 300 ~~~~~li~~~l~~~p~~Rps~~~~l~ 325 (332)
T 3qd2_B 300 PQEHMMVQDMLSPSPTERPEATDIIE 325 (332)
T ss_dssp HHHHHHHHHHHCSSGGGSCCHHHHHH
T ss_pred hhHHHHHHHHccCCCCcCCCHHHHhh
Confidence 56789999999999999999999986
No 136
>3a62_A Ribosomal protein S6 kinase beta-1; kinase domain, inactive, active, ribosomal S6 kinase, activation, alternative initiation, ATP-binding; HET: TPO STU; 2.35A {Homo sapiens} PDB: 3a61_A* 3a60_A*
Probab=100.00 E-value=3e-40 Score=344.67 Aligned_cols=248 Identities=23% Similarity=0.279 Sum_probs=193.5
Q ss_pred hccCCccccccccccEEEEEEEe----cCCCeEEEEEechhh----HHHHHHHHHHHHHHHhcCCCceeeEeeeeecCCe
Q 005040 426 TDEFNECNLLGTGGFGSVYKGTL----SDGTNVAIKIFNLQL----ERAFRSFDSECEILRNVRHRNLLKILGSCSNLDF 497 (717)
Q Consensus 426 ~~~~~~~~~lg~G~~g~V~~~~~----~~~~~vavK~~~~~~----~~~~~~~~~e~~~l~~l~hpniv~~~~~~~~~~~ 497 (717)
.++|++.+.||+|+||.||+|+. .+++.||+|+++... ......+.+|++++++++||||+++++++.+.+.
T Consensus 16 ~~~y~~~~~lG~G~~g~V~~~~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~~E~~~l~~l~hp~iv~~~~~~~~~~~ 95 (327)
T 3a62_A 16 PECFELLRVLGKGGYGKVFQVRKVTGANTGKIFAMKVLKKAMIVRNAKDTAHTKAERNILEEVKHPFIVDLIYAFQTGGK 95 (327)
T ss_dssp GGGEEEEEEEEEETTEEEEEEEECSSTTTTCEEEEEEECCC--------------HHHHHHHCCCTTBCCEEEEEECSSC
T ss_pred HHHeEEEEEEEeCCCEEEEEEEEeccCCCCcEEEEEEEEHHHhhhhhhHHHHHHHHHHHHHhCCCCCccceeEEEEcCCE
Confidence 47899999999999999999986 478999999997542 2234567889999999999999999999999999
Q ss_pred eEEEEEccCCCCHHHHHhhCCCCCCHHHHHHHHHHHHHHHHHHhhcCCCCCeEecCCCCCCeeeCCCCcEEEeeeccccc
Q 005040 498 KALVLEFMPNGSLEKWLYSHNYFLDILQRLNIMIDVGSALEYLHHCHSSAPIIHCDLKPTNILLDENMVAHVSDFGISKL 577 (717)
Q Consensus 498 ~~lv~e~~~~g~L~~~l~~~~~~~~~~~~~~i~~~i~~~l~~LH~~~~~~~ivH~dlk~~Nill~~~~~~kl~Dfgl~~~ 577 (717)
.|+||||+++|+|.+++...+ .+++..+..++.|++.||.||| +.+|+||||||+||+++.++.+||+|||+++.
T Consensus 96 ~~lv~e~~~~~~L~~~l~~~~-~~~~~~~~~~~~qi~~al~~lH----~~~ivH~Dlkp~Nill~~~~~~kl~Dfg~~~~ 170 (327)
T 3a62_A 96 LYLILEYLSGGELFMQLEREG-IFMEDTACFYLAEISMALGHLH----QKGIIYRDLKPENIMLNHQGHVKLTDFGLCKE 170 (327)
T ss_dssp EEEEEECCTTEEHHHHHHHHS-SCCHHHHHHHHHHHHHHHHHHH----HTTCCCCCCCTTTEEECTTSCEEECCCSCC--
T ss_pred EEEEEeCCCCCcHHHHHHhCC-CCCHHHHHHHHHHHHHHHHHHH----hCCEEcccCCHHHeEECCCCcEEEEeCCcccc
Confidence 999999999999999998654 3889999999999999999999 67899999999999999999999999999876
Q ss_pred cCCCCCceeeeccccCccccCCCccCCCCcCcccchhhHHHHHHHHHhCCCCCCccccCcchHHHHHHhhCCCchhhhcc
Q 005040 578 LGEGEDSVIQTMTMATIGYMAPEYGSEGIVSTKCDVYSYGVLLMETFTEKKPTDEMFTGEMSLRRWVKESLPHRLTEVVD 657 (717)
Q Consensus 578 ~~~~~~~~~~~~~~~t~~y~aPE~~~~~~~~~~~Dvws~G~il~el~tg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 657 (717)
..... .......||+.|+|||++.+..++.++||||+|+++|||++|+.||...... .....+...
T Consensus 171 ~~~~~--~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~el~~g~~pf~~~~~~--~~~~~i~~~---------- 236 (327)
T 3a62_A 171 SIHDG--TVTHTFCGTIEYMAPEILMRSGHNRAVDWWSLGALMYDMLTGAPPFTGENRK--KTIDKILKC---------- 236 (327)
T ss_dssp ----------CTTSSCCTTSCHHHHTTSCCCTHHHHHHHHHHHHHHHHSSCSCCCSSHH--HHHHHHHHT----------
T ss_pred cccCC--ccccccCCCcCccCHhhCcCCCCCCcccchhHHHHHHHHHHCCCCCCCCCHH--HHHHHHHhC----------
Confidence 43222 1223457899999999999999999999999999999999999999753211 111111110
Q ss_pred ccchhhhhhhhhhHHHHHHHHHHHhhccCCCCCCCC-----CHHHHHH
Q 005040 658 ANLVREEQAFSDKMDCLFSIMDLALDCCMDTPHKRI-----HMTDAAA 700 (717)
Q Consensus 658 ~~~~~~~~~~~~~~~~~~~l~~li~~cl~~~P~~Rp-----t~~ev~~ 700 (717)
.. ..+..++.++.+++.+||+.||++|| ++.|+++
T Consensus 237 -~~-------~~p~~~~~~~~~li~~~L~~dp~~R~~~~~~~~~e~l~ 276 (327)
T 3a62_A 237 -KL-------NLPPYLTQEARDLLKKLLKRNAASRLGAGPGDAGEVQA 276 (327)
T ss_dssp -CC-------CCCTTSCHHHHHHHHHHSCSCGGGSTTSSTTTHHHHHH
T ss_pred -CC-------CCCCCCCHHHHHHHHHHHhcCHhhccCCCCCCHHHHHc
Confidence 00 00112345688999999999999999 6677764
No 137
>1u5q_A Serine/threonine protein kinase TAO2; transferase; HET: SEP; 2.10A {Rattus norvegicus} SCOP: d.144.1.7 PDB: 1u5r_A* 2gcd_A*
Probab=100.00 E-value=1.6e-40 Score=349.09 Aligned_cols=246 Identities=26% Similarity=0.342 Sum_probs=201.2
Q ss_pred ccCCccccccccccEEEEEEEe-cCCCeEEEEEechh---hHHHHHHHHHHHHHHHhcCCCceeeEeeeeecCCeeEEEE
Q 005040 427 DEFNECNLLGTGGFGSVYKGTL-SDGTNVAIKIFNLQ---LERAFRSFDSECEILRNVRHRNLLKILGSCSNLDFKALVL 502 (717)
Q Consensus 427 ~~~~~~~~lg~G~~g~V~~~~~-~~~~~vavK~~~~~---~~~~~~~~~~e~~~l~~l~hpniv~~~~~~~~~~~~~lv~ 502 (717)
+.|+..+.||+|+||.||+|.. .+++.||||++... .....+.+.+|++++++++||||+++++++.+.+..++||
T Consensus 54 ~~y~~~~~lG~G~~g~Vy~a~~~~~~~~vaiK~~~~~~~~~~~~~~~~~~E~~~l~~l~hpniv~~~~~~~~~~~~~lv~ 133 (348)
T 1u5q_A 54 KLFSDLREIGHGSFGAVYFARDVRNSEVVAIKKMSYSGKQSNEKWQDIIKEVRFLQKLRHPNTIQYRGCYLREHTAWLVM 133 (348)
T ss_dssp HHEEEEEEEEECSSEEEEEEEETTTTEEEEEEEEESCSSCHHHHHHHHHHHHHHHHHCCCTTBCCEEEEEEETTEEEEEE
T ss_pred hheeeeeEEccCCCEEEEEEEEccCCeEEEEEEEccccccchHHHHHHHHHHHHHHhCCCCCEeeEEEEEEECCeEEEEE
Confidence 5688999999999999999996 47999999998643 2344567889999999999999999999999999999999
Q ss_pred EccCCCCHHHHHhhCCCCCCHHHHHHHHHHHHHHHHHHhhcCCCCCeEecCCCCCCeeeCCCCcEEEeeeccccccCCCC
Q 005040 503 EFMPNGSLEKWLYSHNYFLDILQRLNIMIDVGSALEYLHHCHSSAPIIHCDLKPTNILLDENMVAHVSDFGISKLLGEGE 582 (717)
Q Consensus 503 e~~~~g~L~~~l~~~~~~~~~~~~~~i~~~i~~~l~~LH~~~~~~~ivH~dlk~~Nill~~~~~~kl~Dfgl~~~~~~~~ 582 (717)
||+. |+|.+++......+++..+..++.|+++||.||| +.+|+||||||+||+++.++.+||+|||++......
T Consensus 134 e~~~-g~l~~~l~~~~~~l~~~~~~~i~~qi~~aL~~LH----~~~ivH~Dlkp~NIll~~~~~~kL~DfG~a~~~~~~- 207 (348)
T 1u5q_A 134 EYCL-GSASDLLEVHKKPLQEVEIAAVTHGALQGLAYLH----SHNMIHRDVKAGNILLSEPGLVKLGDFGSASIMAPA- 207 (348)
T ss_dssp ECCS-EEHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHH----HTTCBCCCCSGGGEEEETTTEEEECCCTTCBSSSSB-
T ss_pred ecCC-CCHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHH----hCCeeeCCCCHHHEEECCCCCEEEeeccCceecCCC-
Confidence 9997 6899988766667999999999999999999999 678999999999999999999999999999876432
Q ss_pred CceeeeccccCccccCCCcc---CCCCcCcccchhhHHHHHHHHHhCCCCCCccccCcchHHHHHHhhCCCchhhhcccc
Q 005040 583 DSVIQTMTMATIGYMAPEYG---SEGIVSTKCDVYSYGVLLMETFTEKKPTDEMFTGEMSLRRWVKESLPHRLTEVVDAN 659 (717)
Q Consensus 583 ~~~~~~~~~~t~~y~aPE~~---~~~~~~~~~Dvws~G~il~el~tg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 659 (717)
....||+.|+|||++ ..+.++.++|||||||++|||++|+.||....... ..........+.
T Consensus 208 -----~~~~gt~~y~aPE~~~~~~~~~~~~~~DiwslG~il~ell~g~~p~~~~~~~~-~~~~~~~~~~~~--------- 272 (348)
T 1u5q_A 208 -----NSFVGTPYWMAPEVILAMDEGQYDGKVDVWSLGITCIELAERKPPLFNMNAMS-ALYHIAQNESPA--------- 272 (348)
T ss_dssp -----CCCCSCGGGCCHHHHHTTSSCCBCTHHHHHHHHHHHHHHHHSSCTTTTSCHHH-HHHHHHHSCCCC---------
T ss_pred -----CcccCCcceeCHhhhccccCCCCCcHHHHHHHHHHHHHHHhCCCCCCCCChHH-HHHHHHhcCCCC---------
Confidence 234689999999986 46779999999999999999999999986532111 111111111000
Q ss_pred chhhhhhhhhhHHHHHHHHHHHhhccCCCCCCCCCHHHHHHH
Q 005040 660 LVREEQAFSDKMDCLFSIMDLALDCCMDTPHKRIHMTDAAAK 701 (717)
Q Consensus 660 ~~~~~~~~~~~~~~~~~l~~li~~cl~~~P~~Rpt~~ev~~~ 701 (717)
. ....++..+.+++.+||+.||++|||+.++++.
T Consensus 273 ~--------~~~~~~~~l~~li~~~l~~dP~~Rps~~~ll~h 306 (348)
T 1u5q_A 273 L--------QSGHWSEYFRNFVDSCLQKIPQDRPTSEVLLKH 306 (348)
T ss_dssp C--------CCTTSCHHHHHHHHHHTCSSGGGSCCHHHHTTC
T ss_pred C--------CCCCCCHHHHHHHHHHcccChhhCcCHHHHhhC
Confidence 0 011234567899999999999999999999763
No 138
>3kn6_A Ribosomal protein S6 kinase alpha-5; AMP-PNP, MSK1, MSK, ATP-binding, metal-binding, NUCL binding, serine/threonine-protein kinase, transferase; 2.00A {Homo sapiens} PDB: 3kn5_A
Probab=100.00 E-value=2.6e-40 Score=344.71 Aligned_cols=248 Identities=22% Similarity=0.282 Sum_probs=179.9
Q ss_pred cccccccccEEEEEEEec-CCCeEEEEEechhhHHHHHHHHHHHHHHHhcC-CCceeeEeeeeecCCeeEEEEEccCCCC
Q 005040 432 CNLLGTGGFGSVYKGTLS-DGTNVAIKIFNLQLERAFRSFDSECEILRNVR-HRNLLKILGSCSNLDFKALVLEFMPNGS 509 (717)
Q Consensus 432 ~~~lg~G~~g~V~~~~~~-~~~~vavK~~~~~~~~~~~~~~~e~~~l~~l~-hpniv~~~~~~~~~~~~~lv~e~~~~g~ 509 (717)
.+.||+|+||.||+|... +++.||||++.... ...+.+|+.+++.+. ||||+++++++.+....|+||||+++|+
T Consensus 16 ~~~lG~G~~g~V~~~~~~~~~~~vavK~~~~~~---~~~~~~e~~~l~~l~~h~niv~~~~~~~~~~~~~lv~e~~~~~~ 92 (325)
T 3kn6_A 16 DKPLGEGSFSICRKCVHKKSNQAFAVKIISKRM---EANTQKEITALKLCEGHPNIVKLHEVFHDQLHTFLVMELLNGGE 92 (325)
T ss_dssp SCCSEEETTEEEEEEEETTTCCEEEEEEEEGGG---HHHHHHHHHHHHHTTTCTTBCCEEEEEECSSEEEEEECCCCSCB
T ss_pred CCccccCCCeEEEEEEECCCCCEEEEEEEChhh---hhhHHHHHHHHHHhcCCCCeeEEEEEEEcCCEEEEEEEccCCCc
Confidence 378999999999999975 78999999997543 345678999999997 9999999999999999999999999999
Q ss_pred HHHHHhhCCCCCCHHHHHHHHHHHHHHHHHHhhcCCCCCeEecCCCCCCeeeCCCC---cEEEeeeccccccCCCCCcee
Q 005040 510 LEKWLYSHNYFLDILQRLNIMIDVGSALEYLHHCHSSAPIIHCDLKPTNILLDENM---VAHVSDFGISKLLGEGEDSVI 586 (717)
Q Consensus 510 L~~~l~~~~~~~~~~~~~~i~~~i~~~l~~LH~~~~~~~ivH~dlk~~Nill~~~~---~~kl~Dfgl~~~~~~~~~~~~ 586 (717)
|.+++.... .+++..+..++.|++.||.||| +.+|+||||||+||+++.++ .+||+|||+++....... .
T Consensus 93 L~~~l~~~~-~~~~~~~~~i~~qi~~~l~~LH----~~~ivH~Dlkp~NIll~~~~~~~~~kl~Dfg~a~~~~~~~~--~ 165 (325)
T 3kn6_A 93 LFERIKKKK-HFSETEASYIMRKLVSAVSHMH----DVGVVHRDLKPENLLFTDENDNLEIKIIDFGFARLKPPDNQ--P 165 (325)
T ss_dssp HHHHHHHCS-CCCHHHHHHHHHHHHHHHHHHH----HTTEECCCCCGGGEEEEC----CEEEECCCTTCEECCC------
T ss_pred HHHHHHhcC-CCCHHHHHHHHHHHHHHHHHHH----HCCCeecCCCHHHEEEecCCCcccEEEeccccceecCCCCC--c
Confidence 999998764 4899999999999999999999 67899999999999998765 899999999987643322 2
Q ss_pred eeccccCccccCCCccCCCCcCcccchhhHHHHHHHHHhCCCCCCccccCc--chHHHHHHhhCCCchhhhccccchhhh
Q 005040 587 QTMTMATIGYMAPEYGSEGIVSTKCDVYSYGVLLMETFTEKKPTDEMFTGE--MSLRRWVKESLPHRLTEVVDANLVREE 664 (717)
Q Consensus 587 ~~~~~~t~~y~aPE~~~~~~~~~~~Dvws~G~il~el~tg~~p~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~ 664 (717)
.....||+.|+|||++.+..++.++||||+|+++|||++|+.||....... ............... .+.
T Consensus 166 ~~~~~~t~~y~aPE~~~~~~~~~~~DiwslG~il~~ll~g~~pf~~~~~~~~~~~~~~~~~~i~~~~~------~~~--- 236 (325)
T 3kn6_A 166 LKTPCFTLHYAAPELLNQNGYDESCDLWSLGVILYTMLSGQVPFQSHDRSLTCTSAVEIMKKIKKGDF------SFE--- 236 (325)
T ss_dssp ------------------CCCCHHHHHHHHHHHHHHHHHSSCTTC-------CCCHHHHHHHHTTTCC------CCC---
T ss_pred ccccCCCcCccCHHHhcCCCCCCccchHHHHHHHHHHHhCCCCCCCCccccccccHHHHHHHHHcCCC------CCC---
Confidence 234568999999999999999999999999999999999999997633211 111111111110000 000
Q ss_pred hhhhhhHHHHHHHHHHHhhccCCCCCCCCCHHHHHH
Q 005040 665 QAFSDKMDCLFSIMDLALDCCMDTPHKRIHMTDAAA 700 (717)
Q Consensus 665 ~~~~~~~~~~~~l~~li~~cl~~~P~~Rpt~~ev~~ 700 (717)
......++.++.+++.+||+.||++|||++|+++
T Consensus 237 --~~~~~~~s~~~~~li~~~L~~dP~~Rpt~~ell~ 270 (325)
T 3kn6_A 237 --GEAWKNVSQEAKDLIQGLLTVDPNKRLKMSGLRY 270 (325)
T ss_dssp --SHHHHTSCHHHHHHHHHHHCCCTTTCCCTTTSTT
T ss_pred --cccccCCCHHHHHHHHHHCCCChhHCCCHHHHhc
Confidence 0111234567899999999999999999999873
No 139
>2h34_A Serine/threonine-protein kinase PKNE; apoenzyme, transferase; 2.80A {Mycobacterium tuberculosis}
Probab=100.00 E-value=3.1e-40 Score=342.05 Aligned_cols=265 Identities=22% Similarity=0.256 Sum_probs=201.9
Q ss_pred hccCCccccccccccEEEEEEEec-CCCeEEEEEechhh---HHHHHHHHHHHHHHHhcCCCceeeEeeeeecCCeeEEE
Q 005040 426 TDEFNECNLLGTGGFGSVYKGTLS-DGTNVAIKIFNLQL---ERAFRSFDSECEILRNVRHRNLLKILGSCSNLDFKALV 501 (717)
Q Consensus 426 ~~~~~~~~~lg~G~~g~V~~~~~~-~~~~vavK~~~~~~---~~~~~~~~~e~~~l~~l~hpniv~~~~~~~~~~~~~lv 501 (717)
.++|++.+.||+|+||.||+|... +++.||+|++.... ....+.+.+|+.++++++||||+++++++.+.+..++|
T Consensus 33 ~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~~e~~~l~~l~hp~iv~~~~~~~~~~~~~lv 112 (309)
T 2h34_A 33 FGPYRLRRLVGRGGMGDVYEAEDTVRERIVALKLMSETLSSDPVFRTRMQREARTAGRLQEPHVVPIHDFGEIDGQLYVD 112 (309)
T ss_dssp -CCEEEEEEEEECSSSEEEEEEETTTTEEEEEEECGGGGGGSHHHHHHHHHHHHHHTTCCCTTBCCEEEEEEETTEEEEE
T ss_pred eccEEEEEEEcCCCCeeEEEEEEcCCCeEEEEEecCcccccCHHHHHHHHHHHHHHhhcCCCCeeEEEEEEeeCCeEEEE
Confidence 478999999999999999999975 78899999997553 23346788999999999999999999999999999999
Q ss_pred EEccCCCCHHHHHhhCCCCCCHHHHHHHHHHHHHHHHHHhhcCCCCCeEecCCCCCCeeeCCCCcEEEeeeccccccCCC
Q 005040 502 LEFMPNGSLEKWLYSHNYFLDILQRLNIMIDVGSALEYLHHCHSSAPIIHCDLKPTNILLDENMVAHVSDFGISKLLGEG 581 (717)
Q Consensus 502 ~e~~~~g~L~~~l~~~~~~~~~~~~~~i~~~i~~~l~~LH~~~~~~~ivH~dlk~~Nill~~~~~~kl~Dfgl~~~~~~~ 581 (717)
|||+++++|.+++.... .+++..+..++.|++.||.||| +.+|+||||||+||+++.++.+||+|||++......
T Consensus 113 ~e~~~~~~L~~~l~~~~-~~~~~~~~~i~~qi~~~l~~lH----~~~i~H~dlkp~NIl~~~~~~~kl~Dfg~~~~~~~~ 187 (309)
T 2h34_A 113 MRLINGVDLAAMLRRQG-PLAPPRAVAIVRQIGSALDAAH----AAGATHRDVKPENILVSADDFAYLVDFGIASATTDE 187 (309)
T ss_dssp EECCCCEEHHHHHHHHC-SCCHHHHHHHHHHHHHHHHHHH----HTTCCCSCCCGGGEEECTTSCEEECSCCC-------
T ss_pred EEecCCCCHHHHHHhcC-CCCHHHHHHHHHHHHHHHHHHH----HCcCCcCCCChHHEEEcCCCCEEEecCccCcccccc
Confidence 99999999999998654 4899999999999999999999 678999999999999999999999999999876433
Q ss_pred CCceeeeccccCccccCCCccCCCCcCcccchhhHHHHHHHHHhCCCCCCccccCcchHHHHHHhhCCCchhhhccccch
Q 005040 582 EDSVIQTMTMATIGYMAPEYGSEGIVSTKCDVYSYGVLLMETFTEKKPTDEMFTGEMSLRRWVKESLPHRLTEVVDANLV 661 (717)
Q Consensus 582 ~~~~~~~~~~~t~~y~aPE~~~~~~~~~~~Dvws~G~il~el~tg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 661 (717)
.. .......+|+.|+|||.+.+..++.++||||||+++|||++|+.||...... .....+....+..
T Consensus 188 ~~-~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~g~~pf~~~~~~--~~~~~~~~~~~~~---------- 254 (309)
T 2h34_A 188 KL-TQLGNTVGTLYYMAPERFSESHATYRADIYALTCVLYECLTGSPPYQGDQLS--VMGAHINQAIPRP---------- 254 (309)
T ss_dssp ----------CCGGGCCGGGTCC----CCCHHHHHHHHHHHHHHSSCSSCSCHHH--HHHHHHHSCCCCG----------
T ss_pred cc-ccccccCCCcCccCHHHHcCCCCCchHhHHHHHHHHHHHHHCCCCCCCchHH--HHHHHhccCCCCc----------
Confidence 21 1223456899999999999999999999999999999999999999763211 1111111111100
Q ss_pred hhhhhhhhhHHHHHHHHHHHhhccCCCCCCCC-CHHHHHHHHHHhHHhhccch
Q 005040 662 REEQAFSDKMDCLFSIMDLALDCCMDTPHKRI-HMTDAAAKLRKIKAKFLDDV 713 (717)
Q Consensus 662 ~~~~~~~~~~~~~~~l~~li~~cl~~~P~~Rp-t~~ev~~~L~~~~~~~~~~~ 713 (717)
......++.++.+++.+||+.||++|| +++++++.|++..+....+.
T Consensus 255 -----~~~~~~~~~~l~~li~~~l~~dP~~Rp~s~~~l~~~l~~~l~~~~~~~ 302 (309)
T 2h34_A 255 -----STVRPGIPVAFDAVIARGMAKNPEDRYVTCGDLSAAAHAALATADQDR 302 (309)
T ss_dssp -----GGTSTTCCTHHHHHHHHHTCSSGGGSCSSHHHHHHHHHHTCC------
T ss_pred -----cccCCCCCHHHHHHHHHhccCCHHHHHHhHHHHHHHHHHHHHhhcccc
Confidence 001123445688999999999999999 99999999998766554443
No 140
>3gxj_A TGF-beta receptor type-1; ALK5, kinase, inhibitor, quinazoline, aortic aneurysm, ATP-binding, craniosynostosis, disease mutation, disulfide bond; HET: 855; 1.70A {Homo sapiens} PDB: 1vjy_A* 3gxl_A* 3hmm_A* 3tzm_A* 2wot_A* 2wou_A* 1py5_A* 1rw8_A*
Probab=100.00 E-value=6.4e-42 Score=354.01 Aligned_cols=270 Identities=23% Similarity=0.355 Sum_probs=192.1
Q ss_pred hccCCccccccccccEEEEEEEecCCCeEEEEEechhhHHHHHHHHHHHHHHHh--cCCCceeeEeeeeecCC----eeE
Q 005040 426 TDEFNECNLLGTGGFGSVYKGTLSDGTNVAIKIFNLQLERAFRSFDSECEILRN--VRHRNLLKILGSCSNLD----FKA 499 (717)
Q Consensus 426 ~~~~~~~~~lg~G~~g~V~~~~~~~~~~vavK~~~~~~~~~~~~~~~e~~~l~~--l~hpniv~~~~~~~~~~----~~~ 499 (717)
.++|++.+.||+|+||.||+|++. ++.||||++.... ...+.+|.+++.. ++||||+++++++.+.. ..+
T Consensus 2 ~~~y~~~~~lg~G~~g~V~~~~~~-~~~vavK~~~~~~---~~~~~~e~~~~~~~~~~h~~i~~~~~~~~~~~~~~~~~~ 77 (303)
T 3gxj_A 2 ARTIVLQESIGKGRFGEVWRGKWR-GEEVAVKIFSSRE---ERSWFREAEIYQTVMLRHENILGFIAADNKDNGTWTQLW 77 (303)
T ss_dssp GGGCCCCEEEEECSSSEEEEC-CT-TSCEEEEECC-TT---HHHHHHHHHHHTSTTCCC-CBCCEEEEEEEECSSSEEEE
T ss_pred cceeeehhhccCCCCeEEEEEEEc-CcceEEEEecccc---hhhHHHHHHHHHHHhccCcceeeeeeecccCCCccceeE
Confidence 368999999999999999999874 8999999987543 2456678888887 79999999999997766 789
Q ss_pred EEEEccCCCCHHHHHhhCCCCCCHHHHHHHHHHHHHHHHHHhhc----CCCCCeEecCCCCCCeeeCCCCcEEEeeeccc
Q 005040 500 LVLEFMPNGSLEKWLYSHNYFLDILQRLNIMIDVGSALEYLHHC----HSSAPIIHCDLKPTNILLDENMVAHVSDFGIS 575 (717)
Q Consensus 500 lv~e~~~~g~L~~~l~~~~~~~~~~~~~~i~~~i~~~l~~LH~~----~~~~~ivH~dlk~~Nill~~~~~~kl~Dfgl~ 575 (717)
+||||+++|+|.+++.... +++..+..++.|++.||+|||.. ..+.+|+||||||+||+++.++.+||+|||++
T Consensus 78 lv~e~~~~g~L~~~l~~~~--~~~~~~~~~~~~i~~~l~~lH~~~~~~~~~~~ivH~Dlkp~Nil~~~~~~~kl~DFg~a 155 (303)
T 3gxj_A 78 LVSDYHEHGSLFDYLNRYT--VTVEGMIKLALSTASGLAHLHMEIVGTQGKPAIAHRDLKSKNILVKKNGTCCIADLGLA 155 (303)
T ss_dssp EEEECCTTCCHHHHHHHCC--BCC-CHHHHC-CHHHHHC-CCCCBCSTTCBC-CCCSCCCGGGC-CCTTCCC-BCCCCC-
T ss_pred EEEeccCCCCHHHHHhccC--cchHHHHHHHHHHHHHHHHHHHHHhhhccCCCEeeCcCCHHHeEECCCCCEEEeecCcc
Confidence 9999999999999998754 78888999999999999999921 01368999999999999999999999999999
Q ss_pred cccCCCCCce--eeeccccCccccCCCccCCC------CcCcccchhhHHHHHHHHHhC----------CCCCCccccCc
Q 005040 576 KLLGEGEDSV--IQTMTMATIGYMAPEYGSEG------IVSTKCDVYSYGVLLMETFTE----------KKPTDEMFTGE 637 (717)
Q Consensus 576 ~~~~~~~~~~--~~~~~~~t~~y~aPE~~~~~------~~~~~~Dvws~G~il~el~tg----------~~p~~~~~~~~ 637 (717)
.......... ......||+.|+|||++.+. .++.++|||||||++|||++| +.||.......
T Consensus 156 ~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~~~~~~DiwslG~il~el~~g~~~~~~~~~~~~p~~~~~~~~ 235 (303)
T 3gxj_A 156 VRHDSATDTIDIAPNHRVGTKRYMAPEVLDDSINMKHFESFKRADIYAMGLVFWEIARRCSIGGIHEDYQLPYYDLVPSD 235 (303)
T ss_dssp CCEETTTTEESCC-----CCGGGCCHHHHTTCSCTTCHHHHHHHHHHC-CCCC-CTGGGBCBTTBC-CCCCTTTTTCC-C
T ss_pred eeccCCCcccccccCCCCcCccccCHhhhcCcccccccccCcchhHHHHHHHHHHHHhcCCCccccceeeccccccCCCC
Confidence 7765433221 12334689999999988766 455789999999999999999 55554432211
Q ss_pred chHHHHHHhhCCCchhhhccccchhhhhhhhhhHHHHHHHHHHHhhccCCCCCCCCCHHHHHHHHHHhHHhh
Q 005040 638 MSLRRWVKESLPHRLTEVVDANLVREEQAFSDKMDCLFSIMDLALDCCMDTPHKRIHMTDAAAKLRKIKAKF 709 (717)
Q Consensus 638 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~cl~~~P~~Rpt~~ev~~~L~~~~~~~ 709 (717)
....... ..+.........+......+++..+.+++.+||+.||++|||++|+++.|+++.++.
T Consensus 236 ~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~cl~~dP~~Rps~~~i~~~L~~l~~~~ 299 (303)
T 3gxj_A 236 PSVEEMR--------KVVCEQKLRPNIPNRWQSCEALRVMAKIMRECWYANGAARLTALRIKKTLSQLSQQE 299 (303)
T ss_dssp CCCC-CH--------HHHTTSCCCCCCCGGGGSSHHHHHHHHHHHTTCCSSGGGSCCHHHHHHHHHC-CCC-
T ss_pred ccHHHHH--------HHHHHhhcCCCccccccchhhHHHHHHHHHHHhccCcccCCCHHHHHHHHHHhhhhc
Confidence 1111111 111111111111111223356778999999999999999999999999999886543
No 141
>3uzp_A CKI-delta, CKID, casein kinase I isoform delta; CK1D, inhibitor, PF670462, transferase-transferase I complex; HET: 0CK; 1.94A {Homo sapiens} PDB: 3uys_A* 3uyt_A* 1cki_A 1ckj_A
Probab=100.00 E-value=7e-40 Score=337.49 Aligned_cols=264 Identities=19% Similarity=0.225 Sum_probs=209.9
Q ss_pred hccCCccccccccccEEEEEEEe-cCCCeEEEEEechhhHHHHHHHHHHHHHHHhcCCCceeeEeeee-ecCCeeEEEEE
Q 005040 426 TDEFNECNLLGTGGFGSVYKGTL-SDGTNVAIKIFNLQLERAFRSFDSECEILRNVRHRNLLKILGSC-SNLDFKALVLE 503 (717)
Q Consensus 426 ~~~~~~~~~lg~G~~g~V~~~~~-~~~~~vavK~~~~~~~~~~~~~~~e~~~l~~l~hpniv~~~~~~-~~~~~~~lv~e 503 (717)
.++|++.+.||+|+||.||+|+. .+++.||||++..... .+.+.+|+++++.++|++++..++++ .+....++|||
T Consensus 8 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~--~~~~~~e~~~l~~l~~~~~i~~~~~~~~~~~~~~lv~e 85 (296)
T 3uzp_A 8 GNRYRLGRKIGSGSFGDIYLGTDIAAGEEVAIKLECVKTK--HPQLHIESKIYKMMQGGVGIPTIRWCGAEGDYNVMVME 85 (296)
T ss_dssp TTTEEEEEEEEEETTEEEEEEEETTTTEEEEEEEEESCSS--CCHHHHHHHHHHHHTTSTTCCCEEEEEEETTEEEEEEE
T ss_pred ccEEEEEEEEccCCCeEEEEEEEcCCCcEEEEEEecCCcc--hhHHHHHHHHHHHhhcCCCCCccccccCCCCceEEEEE
Confidence 46899999999999999999997 4899999999865432 24578899999999988866666655 66778899999
Q ss_pred ccCCCCHHHHHhhCCCCCCHHHHHHHHHHHHHHHHHHhhcCCCCCeEecCCCCCCeee---CCCCcEEEeeeccccccCC
Q 005040 504 FMPNGSLEKWLYSHNYFLDILQRLNIMIDVGSALEYLHHCHSSAPIIHCDLKPTNILL---DENMVAHVSDFGISKLLGE 580 (717)
Q Consensus 504 ~~~~g~L~~~l~~~~~~~~~~~~~~i~~~i~~~l~~LH~~~~~~~ivH~dlk~~Nill---~~~~~~kl~Dfgl~~~~~~ 580 (717)
|+ +++|.+++......+++..+..++.|++.||+||| +.+|+||||||+||++ +.++.+||+|||++.....
T Consensus 86 ~~-~~~L~~~~~~~~~~~~~~~~~~i~~qi~~~l~~lH----~~~ivH~dlkp~NIl~~~~~~~~~~kl~Dfg~~~~~~~ 160 (296)
T 3uzp_A 86 LL-GPSLEDLFNFCSRKFSLKTVLLLADQMISRIEYIH----SKNFIHRDVKPDNFLMGLGKKGNLVYIIDFGLAKKYRD 160 (296)
T ss_dssp CC-CCBHHHHHHHTTTCCCHHHHHHHHHHHHHHHHHHH----HTTEECSCCCGGGEEECCGGGTTCEEECCCTTCEECBC
T ss_pred ec-CCCHHHHHHhhccCCCHHHHHHHHHHHHHHHHHHH----hCCeeeCCCCHHHeEEecCCCCCeEEEeeCCCcccccc
Confidence 99 89999999866667999999999999999999999 6789999999999999 4889999999999987754
Q ss_pred CCCce-----eeeccccCccccCCCccCCCCcCcccchhhHHHHHHHHHhCCCCCCccccCc--chHHHHHHhhCCCchh
Q 005040 581 GEDSV-----IQTMTMATIGYMAPEYGSEGIVSTKCDVYSYGVLLMETFTEKKPTDEMFTGE--MSLRRWVKESLPHRLT 653 (717)
Q Consensus 581 ~~~~~-----~~~~~~~t~~y~aPE~~~~~~~~~~~Dvws~G~il~el~tg~~p~~~~~~~~--~~~~~~~~~~~~~~~~ 653 (717)
..... ......||+.|+|||.+.+..++.++||||||+++|||++|+.||....... ..........
T Consensus 161 ~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~g~~pf~~~~~~~~~~~~~~~~~~~------ 234 (296)
T 3uzp_A 161 ARTHQHIPYRENKNLTGTARYASINTHLGIEQSRRDDLESLGYVLMYFNLGSLPWQGLKAATKRQKYERISEKK------ 234 (296)
T ss_dssp TTTCCBCCCCCSCCCCSCTTTCCHHHHTTCCCCHHHHHHHHHHHHHHHHHSSCTTSSCCCSSSSSHHHHHHHHH------
T ss_pred cccccccccccccccccccccCChhhhcCCCCCcchhhHHHHHHHHHHHhCCCCCCCcCchhhhhhhhhhcccc------
Confidence 43211 1234578999999999999999999999999999999999999997643221 1111111110
Q ss_pred hhccccchhhhhhhhhhHHHHHHHHHHHhhccCCCCCCCCCHHHHHHHHHHhHHhhc
Q 005040 654 EVVDANLVREEQAFSDKMDCLFSIMDLALDCCMDTPHKRIHMTDAAAKLRKIKAKFL 710 (717)
Q Consensus 654 ~~~~~~~~~~~~~~~~~~~~~~~l~~li~~cl~~~P~~Rpt~~ev~~~L~~~~~~~~ 710 (717)
...... .....++.++.+++.+||+.||++|||+.++++.|+++.....
T Consensus 235 ------~~~~~~--~~~~~~~~~l~~li~~~l~~dp~~Rps~~~l~~~l~~~~~~~~ 283 (296)
T 3uzp_A 235 ------MSTPIE--VLCKGYPSEFATYLNFCRSLRFDDKPDYSYLRQLFRNLFHRQG 283 (296)
T ss_dssp ------HHSCHH--HHTTTSCHHHHHHHHHHHTSCTTCCCCHHHHHHHHHHHHHHTT
T ss_pred ------cCCchH--HHHhhCCHHHHHHHHHHHhcCcCcCCCHHHHHHHHHHHHHhcC
Confidence 000000 0112345678999999999999999999999999999876543
No 142
>4eut_A Serine/threonine-protein kinase TBK1; ATP binding, phosphorylation, transferase-transferas inhibitor complex; HET: BX7; 2.60A {Homo sapiens}
Probab=100.00 E-value=2e-40 Score=355.51 Aligned_cols=276 Identities=22% Similarity=0.282 Sum_probs=213.1
Q ss_pred hccCCccccccccccEEEEEEEec-CCCeEEEEEechhh-HHHHHHHHHHHHHHHhcCCCceeeEeeeeecCC--eeEEE
Q 005040 426 TDEFNECNLLGTGGFGSVYKGTLS-DGTNVAIKIFNLQL-ERAFRSFDSECEILRNVRHRNLLKILGSCSNLD--FKALV 501 (717)
Q Consensus 426 ~~~~~~~~~lg~G~~g~V~~~~~~-~~~~vavK~~~~~~-~~~~~~~~~e~~~l~~l~hpniv~~~~~~~~~~--~~~lv 501 (717)
.++|.+.+.||+|+||.||+|.+. +++.||||++.... ....+.+.+|++++++++||||+++++++.+.. ..++|
T Consensus 8 ~~~y~i~~~LG~G~~g~Vy~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~E~~~l~~l~hpnIv~~~~~~~~~~~~~~~lv 87 (396)
T 4eut_A 8 NHLWLLSDILGQGATANVFRGRHKKTGDLFAIKVFNNISFLRPVDVQMREFEVLKKLNHKNIVKLFAIEEETTTRHKVLI 87 (396)
T ss_dssp SEEEEEEEEEEECSSEEEEEEEETTTCCEEEEEEECGGGGGSCHHHHHHHHHHHHHCCCTTBCCEEEEEECTTTCCEEEE
T ss_pred CCceEEEEEEEcCCCeEEEEEEECCCCcEEEEEEeccccccchHHHHHHHHHHHHhcCCCCCCeEEEeeccCCCCeeEEE
Confidence 368999999999999999999976 68999999997544 233566788999999999999999999987655 77999
Q ss_pred EEccCCCCHHHHHhhCC--CCCCHHHHHHHHHHHHHHHHHHhhcCCCCCeEecCCCCCCeee----CCCCcEEEeeeccc
Q 005040 502 LEFMPNGSLEKWLYSHN--YFLDILQRLNIMIDVGSALEYLHHCHSSAPIIHCDLKPTNILL----DENMVAHVSDFGIS 575 (717)
Q Consensus 502 ~e~~~~g~L~~~l~~~~--~~~~~~~~~~i~~~i~~~l~~LH~~~~~~~ivH~dlk~~Nill----~~~~~~kl~Dfgl~ 575 (717)
|||+++|+|.+++.... ..+++..++.++.|++.||+||| +.+|+||||||+||++ +.++.+||+|||++
T Consensus 88 ~e~~~~g~L~~~l~~~~~~~~l~~~~~~~i~~qi~~aL~~LH----~~~ivH~Dlkp~NIll~~~~~~~~~~kL~DFG~a 163 (396)
T 4eut_A 88 MEFCPCGSLYTVLEEPSNAYGLPESEFLIVLRDVVGGMNHLR----ENGIVHRNIKPGNIMRVIGEDGQSVYKLTDFGAA 163 (396)
T ss_dssp ECCCTTEEHHHHTTSGGGTTCCCHHHHHHHHHHHHHHHHHHH----HTTEECCCCCGGGEEEEECTTSCEEEEECCGGGC
T ss_pred EecCCCCCHHHHHHhhhcccCCCHHHHHHHHHHHHHHHHHHH----HCCEEECCcCHHHEEEeecCCCceeEEEecCCCc
Confidence 99999999999998543 33899999999999999999999 6789999999999999 78888999999999
Q ss_pred cccCCCCCceeeeccccCccccCCCccCC--------CCcCcccchhhHHHHHHHHHhCCCCCCccccCcchH---HHHH
Q 005040 576 KLLGEGEDSVIQTMTMATIGYMAPEYGSE--------GIVSTKCDVYSYGVLLMETFTEKKPTDEMFTGEMSL---RRWV 644 (717)
Q Consensus 576 ~~~~~~~~~~~~~~~~~t~~y~aPE~~~~--------~~~~~~~Dvws~G~il~el~tg~~p~~~~~~~~~~~---~~~~ 644 (717)
+....... .....||+.|+|||++.+ ..++.++|||||||++|||++|+.||.......... ....
T Consensus 164 ~~~~~~~~---~~~~~gt~~y~aPE~~~~~~~~~~~~~~~~~~~DiwSlG~il~el~tg~~Pf~~~~~~~~~~~~~~~~~ 240 (396)
T 4eut_A 164 RELEDDEQ---FVSLYGTEEYLHPDMYERAVLRKDHQKKYGATVDLWSIGVTFYHAATGSLPFRPFEGPRRNKEVMYKII 240 (396)
T ss_dssp EECCCGGG---SSCSSSCCTTCCHHHHHHHCC--CHHHHHHHHHHHHHHHHHHHHHHHSSCSEECTTCTTTCHHHHHHHH
T ss_pred eEccCCCc---cccccCCccccCHHHhhccccccccccCCCcHHHHHHHHHHHHHHHHCCCCCCCCCcccchHHHHHHHh
Confidence 87644321 234568999999998754 568889999999999999999999997543322222 2222
Q ss_pred HhhCCCchhhhc---cccc--h-hhhhhhhhhHHHHHHHHHHHhhccCCCCCCCCCHHHHHHHHHHhHHh
Q 005040 645 KESLPHRLTEVV---DANL--V-REEQAFSDKMDCLFSIMDLALDCCMDTPHKRIHMTDAAAKLRKIKAK 708 (717)
Q Consensus 645 ~~~~~~~~~~~~---~~~~--~-~~~~~~~~~~~~~~~l~~li~~cl~~~P~~Rpt~~ev~~~L~~~~~~ 708 (717)
....+..+.... ...+ . ............+..+.+++.+||+.||++||++.|+++.++++..+
T Consensus 241 ~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~ll~~~L~~dP~~R~s~~e~l~~l~~il~~ 310 (396)
T 4eut_A 241 TGKPSGAISGVQKAENGPIDWSGDMPVSCSLSRGLQVLLTPVLANILEADQEKCWGFDQFFAETSDILHR 310 (396)
T ss_dssp HSCCTTCCEEEECSTTCCEEEESSCCTTCSSCHHHHHHHHHHHHHHSCCCTTTSCCHHHHHHHHHHHHTC
T ss_pred cCCCcccchhheeccCCCcccCccCCcccccchHHHhhchHHHHHhhccChhhhccHHHHHHHHHHHhhc
Confidence 211111111110 0000 0 00001112245677899999999999999999999999999988654
No 143
>2y94_A 5'-AMP-activated protein kinase catalytic subunit; transferase, nucleotide-binding, staurosporine-binding, serine/threonine-protein kinase; HET: TPO STU AMP; 3.24A {Rattus norvegicus}
Probab=100.00 E-value=5.5e-40 Score=357.21 Aligned_cols=246 Identities=26% Similarity=0.392 Sum_probs=205.0
Q ss_pred ccCCccccccccccEEEEEEEec-CCCeEEEEEechhhH---HHHHHHHHHHHHHHhcCCCceeeEeeeeecCCeeEEEE
Q 005040 427 DEFNECNLLGTGGFGSVYKGTLS-DGTNVAIKIFNLQLE---RAFRSFDSECEILRNVRHRNLLKILGSCSNLDFKALVL 502 (717)
Q Consensus 427 ~~~~~~~~lg~G~~g~V~~~~~~-~~~~vavK~~~~~~~---~~~~~~~~e~~~l~~l~hpniv~~~~~~~~~~~~~lv~ 502 (717)
++|.+.+.||+|+||.||+|.+. +|+.||||++..... ...+.+.+|+++++.++||||+++++++.+.+..++||
T Consensus 16 ~~Y~l~~~LG~G~fg~V~~a~~~~~g~~vAvK~i~~~~~~~~~~~~~~~~Ei~~l~~l~HpnIv~l~~~~~~~~~~~lv~ 95 (476)
T 2y94_A 16 GHYILGDTLGVGTFGKVKVGKHELTGHKVAVKILNRQKIRSLDVVGKIRREIQNLKLFRHPHIIKLYQVISTPSDIFMVM 95 (476)
T ss_dssp TTEEEEEEEECCSSSCEEEEEETTTCCEEEEEEEEHHHHHHTTTHHHHHHHHHHHTTCCCTTBCCEEEEEECSSEEEEEE
T ss_pred cCEEEEEEEeeCCCeEEEEEEECCCCCEEEEEEEEhhhccCHHHHHHHHHHHHHHHhCCCCCCCcEEEEEEECCEEEEEE
Confidence 68999999999999999999976 799999999976532 23467889999999999999999999999999999999
Q ss_pred EccCCCCHHHHHhhCCCCCCHHHHHHHHHHHHHHHHHHhhcCCCCCeEecCCCCCCeeeCCCCcEEEeeeccccccCCCC
Q 005040 503 EFMPNGSLEKWLYSHNYFLDILQRLNIMIDVGSALEYLHHCHSSAPIIHCDLKPTNILLDENMVAHVSDFGISKLLGEGE 582 (717)
Q Consensus 503 e~~~~g~L~~~l~~~~~~~~~~~~~~i~~~i~~~l~~LH~~~~~~~ivH~dlk~~Nill~~~~~~kl~Dfgl~~~~~~~~ 582 (717)
||+++|+|.+++...+ .+++..+..++.|++.||.||| +.+|+||||||+||+++.++.+||+|||++.......
T Consensus 96 E~~~gg~L~~~l~~~~-~l~~~~~~~i~~qi~~aL~~LH----~~givHrDLkp~NIll~~~~~vkL~DFG~a~~~~~~~ 170 (476)
T 2y94_A 96 EYVSGGELFDYICKNG-RLDEKESRRLFQQILSGVDYCH----RHMVVHRDLKPENVLLDAHMNAKIADFGLSNMMSDGE 170 (476)
T ss_dssp ECCSSEEHHHHTTSSS-SCCHHHHHHHHHHHHHHHHHHH----TTTEECSCCSGGGEEECTTCCEEECCCSSCEECCTTC
T ss_pred eCCCCCcHHHHHHhcC-CCCHHHHHHHHHHHHHHHHHHH----HCCCCcccccHHHEEEecCCCeEEEeccchhhccccc
Confidence 9999999999998654 4899999999999999999999 7899999999999999999999999999998765432
Q ss_pred CceeeeccccCccccCCCccCCCCc-CcccchhhHHHHHHHHHhCCCCCCccccCcchHHHHHHhhCCCchhhhccccch
Q 005040 583 DSVIQTMTMATIGYMAPEYGSEGIV-STKCDVYSYGVLLMETFTEKKPTDEMFTGEMSLRRWVKESLPHRLTEVVDANLV 661 (717)
Q Consensus 583 ~~~~~~~~~~t~~y~aPE~~~~~~~-~~~~Dvws~G~il~el~tg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 661 (717)
. ....+||+.|+|||++.+..+ +.++||||+||++|||++|+.||.+... ......+... ..
T Consensus 171 ~---~~~~~gt~~y~aPE~~~~~~~~~~~~DiwSlGvil~elltG~~Pf~~~~~--~~~~~~i~~~-----------~~- 233 (476)
T 2y94_A 171 F---LRTSCGSPNYAAPEVISGRLYAGPEVDIWSSGVILYALLCGTLPFDDDHV--PTLFKKICDG-----------IF- 233 (476)
T ss_dssp C---BCCCCSCSTTCCHHHHTTCCBCSHHHHHHHHHHHHHHHHHSSCSSCCSSS--HHHHHHHHTT-----------CC-
T ss_pred c---ccccCCCcCeEChhhccCCCCCCCcceehhhHHHHHHHhhCCCCCCCCCH--HHHHHHHhcC-----------Cc-
Confidence 2 234579999999999888765 7899999999999999999999975321 1111111110 00
Q ss_pred hhhhhhhhhHHHHHHHHHHHhhccCCCCCCCCCHHHHHH
Q 005040 662 REEQAFSDKMDCLFSIMDLALDCCMDTPHKRIHMTDAAA 700 (717)
Q Consensus 662 ~~~~~~~~~~~~~~~l~~li~~cl~~~P~~Rpt~~ev~~ 700 (717)
..+..++.++.+++.+||+.||++|||+.|+++
T Consensus 234 ------~~p~~~s~~~~~Li~~~L~~dP~~Rpt~~eil~ 266 (476)
T 2y94_A 234 ------YTPQYLNPSVISLLKHMLQVDPMKRATIKDIRE 266 (476)
T ss_dssp ------CCCTTCCHHHHHHHHHHTCSSTTTSCCHHHHHT
T ss_pred ------CCCccCCHHHHHHHHHHcCCCchhCcCHHHHHh
Confidence 001123456889999999999999999999987
No 144
>3llt_A Serine/threonine kinase-1, pflammer; lammer kinase, malaria, structural GE structural genomics consortium, SGC, transferase; HET: ANP; 2.50A {Plasmodium falciparum 3D7}
Probab=100.00 E-value=3.8e-40 Score=349.42 Aligned_cols=206 Identities=26% Similarity=0.313 Sum_probs=178.5
Q ss_pred CCHHHHHHHhccCCccccccccccEEEEEEEec-CCCeEEEEEechhhHHHHHHHHHHHHHHHhcC-----CCceeeEee
Q 005040 417 TSYLDIRRATDEFNECNLLGTGGFGSVYKGTLS-DGTNVAIKIFNLQLERAFRSFDSECEILRNVR-----HRNLLKILG 490 (717)
Q Consensus 417 ~~~~~~~~~~~~~~~~~~lg~G~~g~V~~~~~~-~~~~vavK~~~~~~~~~~~~~~~e~~~l~~l~-----hpniv~~~~ 490 (717)
+++.+-....++|++.+.||+|+||.||+|+.. +++.||||++.... ...+.+..|+++++.++ ||||+++++
T Consensus 25 ~~~~~g~~~~~~y~~~~~lG~G~~g~V~~~~~~~~~~~vavK~~~~~~-~~~~~~~~e~~~l~~l~~~~~~h~~iv~~~~ 103 (360)
T 3llt_A 25 FSWKKGMLLNNAFLVIRKMGDGTFGRVLLCQHIDNKKYYAVKVVRNIK-KYTRSAKIEADILKKIQNDDINNNNIVKYHG 103 (360)
T ss_dssp CCCCTTCEETTTEEEEEEEEECSSEEEEEEEETTTCCEEEEEEECSCH-HHHHHHHHHHHHHHHTCCCSTTGGGBCCEEE
T ss_pred eeeecceEecCEEEEEEEEcccCCeEEEEEEECCCCeEEEEEEeccch-hhhhhhHHHHHHHHHhcccCCCCCCeecccc
Confidence 334344445689999999999999999999974 78999999997432 33456778999999996 999999999
Q ss_pred eeecCCeeEEEEEccCCCCHHHHHhhCC-CCCCHHHHHHHHHHHHHHHHHHhhcCCCCCeEecCCCCCCeeeCC------
Q 005040 491 SCSNLDFKALVLEFMPNGSLEKWLYSHN-YFLDILQRLNIMIDVGSALEYLHHCHSSAPIIHCDLKPTNILLDE------ 563 (717)
Q Consensus 491 ~~~~~~~~~lv~e~~~~g~L~~~l~~~~-~~~~~~~~~~i~~~i~~~l~~LH~~~~~~~ivH~dlk~~Nill~~------ 563 (717)
++...+..++||||+ +++|.+++.... ..+++..+..++.|++.||+||| +.+|+||||||+|||++.
T Consensus 104 ~~~~~~~~~lv~e~~-~~~L~~~~~~~~~~~~~~~~~~~i~~qi~~aL~~LH----~~~ivHrDlkp~NIll~~~~~~~~ 178 (360)
T 3llt_A 104 KFMYYDHMCLIFEPL-GPSLYEIITRNNYNGFHIEDIKLYCIEILKALNYLR----KMSLTHTDLKPENILLDDPYFEKS 178 (360)
T ss_dssp EEEETTEEEEEECCC-CCBHHHHHHHTTTCCCCHHHHHHHHHHHHHHHHHHH----HTTEECSCCSGGGEEESCTTCCEE
T ss_pred eeeECCeeEEEEcCC-CCCHHHHHHhcCCCCCCHHHHHHHHHHHHHHHHHHH----HCCeeeCCCCcccEEEcccccccc
Confidence 999999999999999 899999998654 35899999999999999999999 678999999999999975
Q ss_pred -------------------CCcEEEeeeccccccCCCCCceeeeccccCccccCCCccCCCCcCcccchhhHHHHHHHHH
Q 005040 564 -------------------NMVAHVSDFGISKLLGEGEDSVIQTMTMATIGYMAPEYGSEGIVSTKCDVYSYGVLLMETF 624 (717)
Q Consensus 564 -------------------~~~~kl~Dfgl~~~~~~~~~~~~~~~~~~t~~y~aPE~~~~~~~~~~~Dvws~G~il~el~ 624 (717)
++.+||+|||++....... ....||+.|+|||++.+..++.++||||+||++|||+
T Consensus 179 ~~~~~~~~~~~~~~~~~~~~~~~kl~DFG~a~~~~~~~-----~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~ell 253 (360)
T 3llt_A 179 LITVRRVTDGKKIQIYRTKSTGIKLIDFGCATFKSDYH-----GSIINTRQYRAPEVILNLGWDVSSDMWSFGCVLAELY 253 (360)
T ss_dssp EEEEECTTTCCEEEEEEESCCCEEECCCTTCEETTSCC-----CSCCSCGGGCCHHHHTTCCCCTTHHHHHHHHHHHHHH
T ss_pred ccchhcccccccccccccCCCCEEEEeccCceecCCCC-----cCccCcccccCcHHHcCCCCCCccchHHHHHHHHHHH
Confidence 7899999999998754322 3446899999999999999999999999999999999
Q ss_pred hCCCCCCcc
Q 005040 625 TEKKPTDEM 633 (717)
Q Consensus 625 tg~~p~~~~ 633 (717)
+|+.||...
T Consensus 254 ~g~~pf~~~ 262 (360)
T 3llt_A 254 TGSLLFRTH 262 (360)
T ss_dssp HSSCSCCCS
T ss_pred HCCCCCCCC
Confidence 999999763
No 145
>1qpc_A LCK kinase; alpha beta fold, transferase; HET: PTR ANP; 1.60A {Homo sapiens} SCOP: d.144.1.7 PDB: 1qpe_A* 1qpj_A* 2pl0_A* 3kxz_A* 3ac1_A* 2zm4_A* 2zyb_A* 2zm1_A* 3ac2_A* 3ac3_A* 3ac4_A* 3ac5_A* 3ac8_A* 3acj_A* 3ack_A* 3ad4_A* 3ad5_A* 3ad6_A* 3kmm_A* 1qpd_A* ...
Probab=100.00 E-value=5.3e-40 Score=335.30 Aligned_cols=262 Identities=23% Similarity=0.394 Sum_probs=210.7
Q ss_pred hccCCccccccccccEEEEEEEecCCCeEEEEEechhhHHHHHHHHHHHHHHHhcCCCceeeEeeeeecCCeeEEEEEcc
Q 005040 426 TDEFNECNLLGTGGFGSVYKGTLSDGTNVAIKIFNLQLERAFRSFDSECEILRNVRHRNLLKILGSCSNLDFKALVLEFM 505 (717)
Q Consensus 426 ~~~~~~~~~lg~G~~g~V~~~~~~~~~~vavK~~~~~~~~~~~~~~~e~~~l~~l~hpniv~~~~~~~~~~~~~lv~e~~ 505 (717)
.++|++.+.||+|+||.||+|..++++.||+|++..... ..+.+.+|++++++++||||+++++++.+ +..++||||+
T Consensus 12 ~~~y~~~~~lg~G~~g~Vy~~~~~~~~~vavK~~~~~~~-~~~~~~~E~~~l~~l~h~~i~~~~~~~~~-~~~~~v~e~~ 89 (279)
T 1qpc_A 12 RETLKLVERLGAGQFGEVWMGYYNGHTKVAVKSLKQGSM-SPDAFLAEANLMKQLQHQRLVRLYAVVTQ-EPIYIITEYM 89 (279)
T ss_dssp GGGEEEEEEEEEETTEEEEEEEETTTEEEEEEEECTTSS-CHHHHHHHHHHHHHCCCTTBCCEEEEECS-SSCEEEEECC
T ss_pred HHhhhheeeecCCCCeEEEEEEEcCCcEEEEEEecCCcc-cHHHHHHHHHHHHhCCCcCcceEEEEEcC-CCcEEEEecC
Confidence 368899999999999999999988888999999875432 34678899999999999999999999874 4579999999
Q ss_pred CCCCHHHHHhhCC-CCCCHHHHHHHHHHHHHHHHHHhhcCCCCCeEecCCCCCCeeeCCCCcEEEeeeccccccCCCCCc
Q 005040 506 PNGSLEKWLYSHN-YFLDILQRLNIMIDVGSALEYLHHCHSSAPIIHCDLKPTNILLDENMVAHVSDFGISKLLGEGEDS 584 (717)
Q Consensus 506 ~~g~L~~~l~~~~-~~~~~~~~~~i~~~i~~~l~~LH~~~~~~~ivH~dlk~~Nill~~~~~~kl~Dfgl~~~~~~~~~~ 584 (717)
++++|.+++.... ..+++..+..++.|++.||.||| +.+|+||||||+||+++.++.+||+|||++........
T Consensus 90 ~~~~L~~~l~~~~~~~~~~~~~~~i~~qi~~~l~~lH----~~~i~H~dikp~Nil~~~~~~~kl~Dfg~~~~~~~~~~- 164 (279)
T 1qpc_A 90 ENGSLVDFLKTPSGIKLTINKLLDMAAQIAEGMAFIE----ERNYIHRDLRAANILVSDTLSCKIADFGLARLIEDNEY- 164 (279)
T ss_dssp TTCBHHHHTTSHHHHTCCHHHHHHHHHHHHHHHHHHH----HTTEECSCCSGGGEEECTTSCEEECCCTTCEECSSSCE-
T ss_pred CCCCHHHHHhcCCCCCCCHHHHHHHHHHHHHHHHHHH----HCCeeccCCCHhhEEEcCCCCEEECCCcccccccCccc-
Confidence 9999999997532 25899999999999999999999 67899999999999999999999999999987654321
Q ss_pred eeeeccccCccccCCCccCCCCcCcccchhhHHHHHHHHHh-CCCCCCccccCcchHHHHHHhhCCCchhhhccccchhh
Q 005040 585 VIQTMTMATIGYMAPEYGSEGIVSTKCDVYSYGVLLMETFT-EKKPTDEMFTGEMSLRRWVKESLPHRLTEVVDANLVRE 663 (717)
Q Consensus 585 ~~~~~~~~t~~y~aPE~~~~~~~~~~~Dvws~G~il~el~t-g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 663 (717)
.......+++.|+|||...+..++.++||||||+++|||++ |+.||...... .....+......
T Consensus 165 ~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~el~~~g~~p~~~~~~~--~~~~~~~~~~~~------------- 229 (279)
T 1qpc_A 165 TAREGAKFPIKWTAPEAINYGTFTIKSDVWSFGILLTEIVTHGRIPYPGMTNP--EVIQNLERGYRM------------- 229 (279)
T ss_dssp ECCTTCCCCTTTSCHHHHHHCEECHHHHHHHHHHHHHHHHTTTCCSSTTCCHH--HHHHHHHTTCCC-------------
T ss_pred ccccCCCCccCccChhhhccCCCCchhhhHHHHHHHHHHHhCCCCCCcccCHH--HHHHHHhcccCC-------------
Confidence 22233456788999999988889999999999999999999 89998753221 111111111000
Q ss_pred hhhhhhhHHHHHHHHHHHhhccCCCCCCCCCHHHHHHHHHHhHHhhccch
Q 005040 664 EQAFSDKMDCLFSIMDLALDCCMDTPHKRIHMTDAAAKLRKIKAKFLDDV 713 (717)
Q Consensus 664 ~~~~~~~~~~~~~l~~li~~cl~~~P~~Rpt~~ev~~~L~~~~~~~~~~~ 713 (717)
.....++.++.+++.+|++.||++|||+.++++.|+++......+.
T Consensus 230 ----~~~~~~~~~l~~li~~~l~~~p~~Rps~~~l~~~l~~~~~~~~~~~ 275 (279)
T 1qpc_A 230 ----VRPDNCPEELYQLMRLCWKERPEDRPTFDYLRSVLEDFFTATEGQY 275 (279)
T ss_dssp ----CCCTTCCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHHHHC----
T ss_pred ----CCcccccHHHHHHHHHHhccChhhCCCHHHHHHHHHHHHHhccCCC
Confidence 0111345678899999999999999999999999999977665543
No 146
>2v62_A Serine/threonine-protein kinase VRK2; transferase, ATP-binding, membrane, nucleotide-binding, TRAN; 1.7A {Homo sapiens}
Probab=100.00 E-value=1e-40 Score=351.29 Aligned_cols=267 Identities=15% Similarity=0.170 Sum_probs=202.5
Q ss_pred hccCCccccccccccEEEEEEEec----CCCeEEEEEechhhHH-----------HHHHHHHHHHHHHhcCCCceeeEee
Q 005040 426 TDEFNECNLLGTGGFGSVYKGTLS----DGTNVAIKIFNLQLER-----------AFRSFDSECEILRNVRHRNLLKILG 490 (717)
Q Consensus 426 ~~~~~~~~~lg~G~~g~V~~~~~~----~~~~vavK~~~~~~~~-----------~~~~~~~e~~~l~~l~hpniv~~~~ 490 (717)
.++|++.+.||+|+||.||+|... ++..||+|++...... ....+.+|+..++.++||||+++++
T Consensus 36 ~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~~~~~aiK~~~~~~~~~~~e~~~~~~~~~~~~~~e~~~~~~l~h~ni~~~~~ 115 (345)
T 2v62_A 36 GNQWVLGKKIGSGGFGLIYLAFPTNKPEKDARHVVKVEYQENGPLFSELKFYQRVAKKDCIKKWIERKQLDYLGIPLFYG 115 (345)
T ss_dssp SCEEEEEEEC------CEEEEEESSSCGGGCCEEEEEEECC-CHHHHHHHHHHHHCCHHHHHHHHHHHTCSCCCCCCEEE
T ss_pred CceEEEEeeEeecCCeEEEEEEecCCCCccceEEEEeeecCCcchHHHHHHHHHHhhhHHHHHHHhhccccccCcceeec
Confidence 368999999999999999999975 5788999988644211 1134667889999999999999999
Q ss_pred eeec----CCeeEEEEEccCCCCHHHHHhhCCCCCCHHHHHHHHHHHHHHHHHHhhcCCCCCeEecCCCCCCeeeCCCC-
Q 005040 491 SCSN----LDFKALVLEFMPNGSLEKWLYSHNYFLDILQRLNIMIDVGSALEYLHHCHSSAPIIHCDLKPTNILLDENM- 565 (717)
Q Consensus 491 ~~~~----~~~~~lv~e~~~~g~L~~~l~~~~~~~~~~~~~~i~~~i~~~l~~LH~~~~~~~ivH~dlk~~Nill~~~~- 565 (717)
++.+ ....++||||+ +++|.+++...+ .+++..+..++.|++.||+||| +.+|+||||||+||+++.++
T Consensus 116 ~~~~~~~~~~~~~lv~e~~-~~~L~~~l~~~~-~~~~~~~~~i~~qi~~aL~~LH----~~~ivH~Dlkp~NIll~~~~~ 189 (345)
T 2v62_A 116 SGLTEFKGRSYRFMVMERL-GIDLQKISGQNG-TFKKSTVLQLGIRMLDVLEYIH----ENEYVHGDIKAANLLLGYKNP 189 (345)
T ss_dssp EEEEESSSCEEEEEEEECE-EEEHHHHCBGGG-BCCHHHHHHHHHHHHHHHHHHH----HTTEECSCCSGGGEEEESSST
T ss_pred ccccccCCCcEEEEEEecc-CCCHHHHHHhcC-CCCHHHHHHHHHHHHHHHHHHH----hCCeeCCCcCHHHEEEccCCC
Confidence 9877 77899999999 999999998665 5899999999999999999999 67899999999999999887
Q ss_pred -cEEEeeeccccccCCCCCc-----eeeeccccCccccCCCccCCCCcCcccchhhHHHHHHHHHhCCCCCCccccCcch
Q 005040 566 -VAHVSDFGISKLLGEGEDS-----VIQTMTMATIGYMAPEYGSEGIVSTKCDVYSYGVLLMETFTEKKPTDEMFTGEMS 639 (717)
Q Consensus 566 -~~kl~Dfgl~~~~~~~~~~-----~~~~~~~~t~~y~aPE~~~~~~~~~~~Dvws~G~il~el~tg~~p~~~~~~~~~~ 639 (717)
.+||+|||+++.+...... .......||+.|+|||++.+..++.++|||||||++|||++|+.||.........
T Consensus 190 ~~~kL~Dfg~a~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Di~slG~il~ell~g~~pf~~~~~~~~~ 269 (345)
T 2v62_A 190 DQVYLADYGLSYRYCPNGNHKQYQENPRKGHNGTIEFTSLDAHKGVALSRRSDVEILGYCMLRWLCGKLPWEQNLKDPVA 269 (345)
T ss_dssp TSEEECCCTTCEESSGGGCCCCCCCCGGGCSCSCTTTCCHHHHHTCCCCHHHHHHHHHHHHHHHHHSSCTTGGGTTCHHH
T ss_pred CcEEEEeCCCceecccccccccchhccccccCCCccccCHHHhcCCCCCchhhHHHHHHHHHHHHhCCCCccccccccHH
Confidence 9999999999876432211 1113457899999999999989999999999999999999999999653322222
Q ss_pred HHHHHHhhCCCchhhhccccchhhhhhhhhhHHHHHHHHHHHhhccCCCCCCCCCHHHHHHHHHHhHH
Q 005040 640 LRRWVKESLPHRLTEVVDANLVREEQAFSDKMDCLFSIMDLALDCCMDTPHKRIHMTDAAAKLRKIKA 707 (717)
Q Consensus 640 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~cl~~~P~~Rpt~~ev~~~L~~~~~ 707 (717)
......... ..+............++.++.+++.+||+.||++|||++++++.|+++..
T Consensus 270 ~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~l~~li~~~l~~dp~~Rps~~~l~~~L~~~~~ 328 (345)
T 2v62_A 270 VQTAKTNLL---------DELPQSVLKWAPSGSSCCEIAQFLVCAHSLAYDEKPNYQALKKILNPHGI 328 (345)
T ss_dssp HHHHHHHHH---------HTTTHHHHHHSCTTSCCHHHHHHHHHHHTCCTTCCCCHHHHHHHHCTTCC
T ss_pred HHHHHHhhc---------ccccHHHHhhccccccHHHHHHHHHHHhhcCcccCCCHHHHHHHHhccCC
Confidence 221111110 00000000001111455678999999999999999999999999998654
No 147
>2acx_A G protein-coupled receptor kinase 6; GRK, G transferase; HET: ANP; 2.60A {Homo sapiens} PDB: 3nyn_A* 3nyo_A*
Probab=100.00 E-value=5.6e-40 Score=361.53 Aligned_cols=250 Identities=26% Similarity=0.357 Sum_probs=206.7
Q ss_pred hccCCccccccccccEEEEEEEec-CCCeEEEEEechhh---HHHHHHHHHHHHHHHhcCCCceeeEeeeeecCCeeEEE
Q 005040 426 TDEFNECNLLGTGGFGSVYKGTLS-DGTNVAIKIFNLQL---ERAFRSFDSECEILRNVRHRNLLKILGSCSNLDFKALV 501 (717)
Q Consensus 426 ~~~~~~~~~lg~G~~g~V~~~~~~-~~~~vavK~~~~~~---~~~~~~~~~e~~~l~~l~hpniv~~~~~~~~~~~~~lv 501 (717)
.++|+..+.||+|+||.||+|..+ +|+.||+|++.... ......+.+|++++++++||||+++++++.+.+..|+|
T Consensus 183 ~~~f~~~~~LG~G~fG~Vy~a~~~~tg~~vAvK~l~k~~~~~~~~~~~~~~E~~iL~~l~hp~Iv~l~~~~~~~~~l~lV 262 (576)
T 2acx_A 183 KNTFRQYRVLGKGGFGEVCACQVRATGKMYACKKLEKKRIKKRKGEAMALNEKQILEKVNSRFVVSLAYAYETKDALCLV 262 (576)
T ss_dssp GGGEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEEHHHHHHTTCHHHHHHHHHHHHHCCCTTBCCEEEEEECSSEEEEE
T ss_pred ccceEEEEEEeeCCCEEEEEEEECCCCCEEEEEEEEhHhhhhhHHHHHHHHHHHHHHHcCCCCEeeEEEEEeeCCEEEEE
Confidence 468999999999999999999975 79999999997653 22345678899999999999999999999999999999
Q ss_pred EEccCCCCHHHHHhhCC-CCCCHHHHHHHHHHHHHHHHHHhhcCCCCCeEecCCCCCCeeeCCCCcEEEeeeccccccCC
Q 005040 502 LEFMPNGSLEKWLYSHN-YFLDILQRLNIMIDVGSALEYLHHCHSSAPIIHCDLKPTNILLDENMVAHVSDFGISKLLGE 580 (717)
Q Consensus 502 ~e~~~~g~L~~~l~~~~-~~~~~~~~~~i~~~i~~~l~~LH~~~~~~~ivH~dlk~~Nill~~~~~~kl~Dfgl~~~~~~ 580 (717)
|||+++|+|.+++...+ ..+++..+..++.||+.||.||| +.+|+||||||+|||++.++++||+|||++.....
T Consensus 263 mEy~~gg~L~~~l~~~~~~~l~e~~~~~i~~qIl~aL~yLH----~~gIvHrDLKPeNILld~~g~vKL~DFGla~~~~~ 338 (576)
T 2acx_A 263 LTLMNGGDLKFHIYHMGQAGFPEARAVFYAAEICCGLEDLH----RERIVYRDLKPENILLDDHGHIRISDLGLAVHVPE 338 (576)
T ss_dssp ECCCCSCBHHHHHHSSSSCCCCHHHHHHHHHHHHHHHHHHH----HTTEECCCCCGGGEEECTTSCEEECCCTTCEECCT
T ss_pred EEcCCCCcHHHHHHhcCCCCCCHHHHHHHHHHHHHHHHHHH----HCCEeccCCchheEEEeCCCCeEEEecccceeccc
Confidence 99999999999998653 34899999999999999999999 67899999999999999999999999999987754
Q ss_pred CCCceeeeccccCccccCCCccCCCCcCcccchhhHHHHHHHHHhCCCCCCccccCcc--hHHHHHHhhCCCchhhhccc
Q 005040 581 GEDSVIQTMTMATIGYMAPEYGSEGIVSTKCDVYSYGVLLMETFTEKKPTDEMFTGEM--SLRRWVKESLPHRLTEVVDA 658 (717)
Q Consensus 581 ~~~~~~~~~~~~t~~y~aPE~~~~~~~~~~~Dvws~G~il~el~tg~~p~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~ 658 (717)
... ....+||+.|+|||++.+..++.++||||+||++|||++|+.||........ .+.+.+.. .+..
T Consensus 339 ~~~---~~~~~GT~~Y~APEvl~~~~~~~~~DiwSLGvilyeLltG~~PF~~~~~~~~~~~i~~~i~~-~~~~------- 407 (576)
T 2acx_A 339 GQT---IKGRVGTVGYMAPEVVKNERYTFSPDWWALGCLLYEMIAGQSPFQQRKKKIKREEVERLVKE-VPEE------- 407 (576)
T ss_dssp TCC---EECCCSCGGGCCHHHHTTCEESSHHHHHHHHHHHHHHHHSSCSSSCSSSCCCHHHHHHHHHH-CCCC-------
T ss_pred Ccc---ccccCCCccccCHHHHcCCCCCccchHHHHHHHHHHHHhCCCCCcccccchhHHHHHHHhhc-cccc-------
Confidence 332 2345799999999999999999999999999999999999999976432211 11111111 1100
Q ss_pred cchhhhhhhhhhHHHHHHHHHHHhhccCCCCCCCC-----CHHHHHH
Q 005040 659 NLVREEQAFSDKMDCLFSIMDLALDCCMDTPHKRI-----HMTDAAA 700 (717)
Q Consensus 659 ~~~~~~~~~~~~~~~~~~l~~li~~cl~~~P~~Rp-----t~~ev~~ 700 (717)
+ +..++.++.++|.+||+.||++|| +++|+++
T Consensus 408 --------~--p~~~s~~~~dLI~~lL~~dP~~R~g~~~~sa~eil~ 444 (576)
T 2acx_A 408 --------Y--SERFSPQARSLCSQLLCKDPAERLGCRGGSAREVKE 444 (576)
T ss_dssp --------C--CTTSCHHHHHHHHHHTCSSGGGSTTCSSSHHHHHHT
T ss_pred --------C--CccCCHHHHHHHHHhccCCHHHcCCCCCCCHHHHHh
Confidence 0 112346688999999999999999 6788765
No 148
>3mtl_A Cell division protein kinase 16; pctaire1, indirubin, structural genomics, structural consortium, SGC, transferase; HET: FEF; 2.40A {Homo sapiens}
Probab=100.00 E-value=1.3e-40 Score=347.24 Aligned_cols=266 Identities=20% Similarity=0.262 Sum_probs=199.0
Q ss_pred ccCCccccccccccEEEEEEEec-CCCeEEEEEechhhHHH-HHHHHHHHHHHHhcCCCceeeEeeeeecCCeeEEEEEc
Q 005040 427 DEFNECNLLGTGGFGSVYKGTLS-DGTNVAIKIFNLQLERA-FRSFDSECEILRNVRHRNLLKILGSCSNLDFKALVLEF 504 (717)
Q Consensus 427 ~~~~~~~~lg~G~~g~V~~~~~~-~~~~vavK~~~~~~~~~-~~~~~~e~~~l~~l~hpniv~~~~~~~~~~~~~lv~e~ 504 (717)
++|++.+.||+|+||+||+|... +++.||+|++....... ...+.+|++++++++||||+++++++.+.+..++||||
T Consensus 2 ~~y~~~~~lG~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~lv~e~ 81 (324)
T 3mtl_A 2 ETYIKLDKLGEGTYATVYKGKSKLTDNLVALKEIRLEHEEGAPCTAIREVSLLKDLKHANIVTLHDIIHTEKSLTLVFEY 81 (324)
T ss_dssp CSEEEEEEEEECSSEEEEEEEETTTCCEEEEEEECC------CCCCCCCHHHHSCCCCTTBCCEEEEEECSSCEEEEEEC
T ss_pred CceEEEEEEcCCCCEEEEEEEECCCCcEEEEEEEecccccccchhHHHHHHHHHhcCCCCCCeeeeEEeeCCEEEEEecc
Confidence 57899999999999999999976 78999999987543221 12455799999999999999999999999999999999
Q ss_pred cCCCCHHHHHhhCCCCCCHHHHHHHHHHHHHHHHHHhhcCCCCCeEecCCCCCCeeeCCCCcEEEeeeccccccCCCCCc
Q 005040 505 MPNGSLEKWLYSHNYFLDILQRLNIMIDVGSALEYLHHCHSSAPIIHCDLKPTNILLDENMVAHVSDFGISKLLGEGEDS 584 (717)
Q Consensus 505 ~~~g~L~~~l~~~~~~~~~~~~~~i~~~i~~~l~~LH~~~~~~~ivH~dlk~~Nill~~~~~~kl~Dfgl~~~~~~~~~~ 584 (717)
++ |+|.+++...+..+++..+..++.|++.||.||| +.+|+||||||+||+++.++.+||+|||++.......
T Consensus 82 ~~-~~l~~~~~~~~~~~~~~~~~~~~~qi~~aL~~LH----~~~ivH~Dikp~NIl~~~~~~~kl~Dfg~a~~~~~~~-- 154 (324)
T 3mtl_A 82 LD-KDLKQYLDDCGNIINMHNVKLFLFQLLRGLAYCH----RQKVLHRDLKPQNLLINERGELKLADFGLARAKSIPT-- 154 (324)
T ss_dssp CS-EEHHHHHHHTTTCCCHHHHHHHHHHHHHHHHHHH----HTTEEESSCCGGGEEECTTCCEEECSSSEEECC------
T ss_pred cc-cCHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHH----HCCccCCCcCHHHEEECCCCCEEEccCcccccccCCc--
Confidence 97 5999999987777999999999999999999999 6789999999999999999999999999998654322
Q ss_pred eeeeccccCccccCCCccCC-CCcCcccchhhHHHHHHHHHhCCCCCCccccCcchHHHHHHhhC---CCchhhhccccc
Q 005040 585 VIQTMTMATIGYMAPEYGSE-GIVSTKCDVYSYGVLLMETFTEKKPTDEMFTGEMSLRRWVKESL---PHRLTEVVDANL 660 (717)
Q Consensus 585 ~~~~~~~~t~~y~aPE~~~~-~~~~~~~Dvws~G~il~el~tg~~p~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~ 660 (717)
.......+|+.|+|||++.+ ..++.++||||+|+++|||++|+.||.+.... ........... +..+........
T Consensus 155 ~~~~~~~~t~~y~aPE~~~~~~~~~~~~DiwslG~il~~l~~g~~pf~~~~~~-~~~~~i~~~~~~~~~~~~~~~~~~~~ 233 (324)
T 3mtl_A 155 KTYDNEVVTLWYRPPDILLGSTDYSTQIDMWGVGCIFYEMATGRPLFPGSTVE-EQLHFIFRILGTPTEETWPGILSNEE 233 (324)
T ss_dssp --------CGGGCCHHHHTTCCCCCTHHHHHHHHHHHHHHHHSSCSCCCSSHH-HHHHHHHHHHCCCCTTTSTTGGGCHH
T ss_pred cccccccCcccccChhhhcCCCCCCcHHHHHHHHHHHHHHHhCCCCCCCCCHH-HHHHHHHHHhCCCChHhchhhhcchh
Confidence 12234468999999998766 66899999999999999999999999764222 11111111111 111111111100
Q ss_pred hh--------hhhhhhhhHHHHHHHHHHHhhccCCCCCCCCCHHHHHH
Q 005040 661 VR--------EEQAFSDKMDCLFSIMDLALDCCMDTPHKRIHMTDAAA 700 (717)
Q Consensus 661 ~~--------~~~~~~~~~~~~~~l~~li~~cl~~~P~~Rpt~~ev~~ 700 (717)
.. ..........++.++.+++.+||+.||++|||++|+++
T Consensus 234 ~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~R~t~~e~l~ 281 (324)
T 3mtl_A 234 FKTYNYPKYRAEALLSHAPRLDSDGADLLTKLLQFEGRNRISAEDAMK 281 (324)
T ss_dssp HHHTCCCCCCCCCHHHHCTTSCHHHHHHHHHHSCSSGGGSCCHHHHTT
T ss_pred hcccccccccchhhhhhcCCCCHHHHHHHHHHcCcCcccCCCHHHHhc
Confidence 00 00001111234567889999999999999999999986
No 149
>2a2a_A Death-associated protein kinase 2; autoinhibition, transferase; 1.47A {Homo sapiens} PDB: 2cke_A* 1wmk_A 1z9x_A 2a27_A 2x0g_A 2xuu_A* 2w4k_A* 2xzs_A
Probab=100.00 E-value=1e-39 Score=340.19 Aligned_cols=251 Identities=22% Similarity=0.279 Sum_probs=205.3
Q ss_pred hccCCccccccccccEEEEEEEec-CCCeEEEEEechhhHH------HHHHHHHHHHHHHhcCCCceeeEeeeeecCCee
Q 005040 426 TDEFNECNLLGTGGFGSVYKGTLS-DGTNVAIKIFNLQLER------AFRSFDSECEILRNVRHRNLLKILGSCSNLDFK 498 (717)
Q Consensus 426 ~~~~~~~~~lg~G~~g~V~~~~~~-~~~~vavK~~~~~~~~------~~~~~~~e~~~l~~l~hpniv~~~~~~~~~~~~ 498 (717)
.++|++.+.||+|+||.||+|... +|+.||+|++...... ..+.+.+|++++++++||||+++++++.+....
T Consensus 11 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~ 90 (321)
T 2a2a_A 11 EDFYDIGEELGSGQFAIVKKCREKSTGLEYAAKFIKKRQSRASRRGVSREEIEREVSILRQVLHHNVITLHDVYENRTDV 90 (321)
T ss_dssp HHHEEEEEEEEECSSEEEEEEEETTTCCEEEEEEEEBCSSSSCSSSBCHHHHHHHHHHHHHCCCTTBCCEEEEEECSSEE
T ss_pred hccEEEeeEeeecCCEEEEEEEECCCCeEEEEEEEecccccccccchhHHHHHHHHHHHHhCCCCCcceEEEEEecCCEE
Confidence 468999999999999999999976 7899999998754311 346788999999999999999999999999999
Q ss_pred EEEEEccCCCCHHHHHhhCCCCCCHHHHHHHHHHHHHHHHHHhhcCCCCCeEecCCCCCCeeeCCCC----cEEEeeecc
Q 005040 499 ALVLEFMPNGSLEKWLYSHNYFLDILQRLNIMIDVGSALEYLHHCHSSAPIIHCDLKPTNILLDENM----VAHVSDFGI 574 (717)
Q Consensus 499 ~lv~e~~~~g~L~~~l~~~~~~~~~~~~~~i~~~i~~~l~~LH~~~~~~~ivH~dlk~~Nill~~~~----~~kl~Dfgl 574 (717)
++||||+++++|.+++.... .+++..+..++.|++.||.||| +.+|+||||||+||+++.++ .+||+|||+
T Consensus 91 ~lv~e~~~~~~L~~~l~~~~-~~~~~~~~~i~~qi~~aL~~lH----~~~ivH~dikp~NIl~~~~~~~~~~~kl~Dfg~ 165 (321)
T 2a2a_A 91 VLILELVSGGELFDFLAQKE-SLSEEEATSFIKQILDGVNYLH----TKKIAHFDLKPENIMLLDKNIPIPHIKLIDFGL 165 (321)
T ss_dssp EEEECCCCSCBHHHHHHTCS-CEEHHHHHHHHHHHHHHHHHHH----HTTEECCCCSGGGEEESCTTSSSCCEEECCCTT
T ss_pred EEEEEcCCCCcHHHHHHhcC-CCCHHHHHHHHHHHHHHHHHHH----hCCeecCCCChHHEEEecCCCCcCCEEEccCcc
Confidence 99999999999999998653 4899999999999999999999 67899999999999999888 799999999
Q ss_pred ccccCCCCCceeeeccccCccccCCCccCCCCcCcccchhhHHHHHHHHHhCCCCCCccccCcchHHHHHHhhCCCchhh
Q 005040 575 SKLLGEGEDSVIQTMTMATIGYMAPEYGSEGIVSTKCDVYSYGVLLMETFTEKKPTDEMFTGEMSLRRWVKESLPHRLTE 654 (717)
Q Consensus 575 ~~~~~~~~~~~~~~~~~~t~~y~aPE~~~~~~~~~~~Dvws~G~il~el~tg~~p~~~~~~~~~~~~~~~~~~~~~~~~~ 654 (717)
+........ .....||+.|+|||++.+..++.++||||+|+++|||++|+.||...... .....+..... .
T Consensus 166 ~~~~~~~~~---~~~~~gt~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~g~~pf~~~~~~--~~~~~i~~~~~-~--- 236 (321)
T 2a2a_A 166 AHEIEDGVE---FKNIFGTPEFVAPEIVNYEPLGLEADMWSIGVITYILLSGASPFLGDTKQ--ETLANITSVSY-D--- 236 (321)
T ss_dssp CEECCTTCC---CCCCCSCGGGCCHHHHTTCCCCTHHHHHHHHHHHHHHHHSCCSSCCSSHH--HHHHHHHTTCC-C---
T ss_pred ceecCcccc---ccccCCCCCccCcccccCCCCCCccccHHHHHHHHHHHHCCCCCCCCCHH--HHHHHHHhccc-c---
Confidence 987654322 23446899999999999999999999999999999999999999753211 11111111000 0
Q ss_pred hccccchhhhhhhhhhHHHHHHHHHHHhhccCCCCCCCCCHHHHHH
Q 005040 655 VVDANLVREEQAFSDKMDCLFSIMDLALDCCMDTPHKRIHMTDAAA 700 (717)
Q Consensus 655 ~~~~~~~~~~~~~~~~~~~~~~l~~li~~cl~~~P~~Rpt~~ev~~ 700 (717)
... .....++..+.+++.+||+.||++|||+.|+++
T Consensus 237 -----~~~-----~~~~~~~~~~~~li~~~l~~dp~~Rps~~e~l~ 272 (321)
T 2a2a_A 237 -----FDE-----EFFSHTSELAKDFIRKLLVKETRKRLTIQEALR 272 (321)
T ss_dssp -----CCH-----HHHTTCCHHHHHHHHTTSCSSTTTSCCHHHHHH
T ss_pred -----cCh-----hhhcccCHHHHHHHHHHcCCChhhCcCHHHHhc
Confidence 000 001134466889999999999999999999986
No 150
>3e7e_A HBUB1, BUB1A, mitotic checkpoint serine/threonine-protein kinas; spindle assembly checkpoint, mitosis, kinase, activation, KE CDC20, ATP-binding; HET: ATP; 2.31A {Homo sapiens}
Probab=100.00 E-value=8.6e-40 Score=347.09 Aligned_cols=255 Identities=17% Similarity=0.151 Sum_probs=207.8
Q ss_pred HhccCCccccccccccEEEEEEE------ecCCCeEEEEEechhhHHHHHHHHHHHHHHHhcC---CCceeeEeeeeecC
Q 005040 425 ATDEFNECNLLGTGGFGSVYKGT------LSDGTNVAIKIFNLQLERAFRSFDSECEILRNVR---HRNLLKILGSCSNL 495 (717)
Q Consensus 425 ~~~~~~~~~~lg~G~~g~V~~~~------~~~~~~vavK~~~~~~~~~~~~~~~e~~~l~~l~---hpniv~~~~~~~~~ 495 (717)
..++|.+.+.||+|+||+||+|. ..+++.||||++..... ..+..|+++++.++ |+||+.+++++...
T Consensus 63 ~~~~y~~~~~lG~G~~g~Vy~~~~~~~~~~~~~~~vavK~~~~~~~---~~~~~e~~~~~~l~~~~~~~iv~~~~~~~~~ 139 (365)
T 3e7e_A 63 GSKLVYVHHLLGEGAFAQVYEATQGDLNDAKNKQKFVLKVQKPANP---WEFYIGTQLMERLKPSMQHMFMKFYSAHLFQ 139 (365)
T ss_dssp SSSEEEEEEEEEECSSEEEEEEEC-------CCCCEEEEEESSCCH---HHHHHHHHHHHHSCGGGGGGBCCEEEEEECS
T ss_pred CCEEEEEEEEeeccCCEEEEEEEecCCcccccCcEEEEEEeCCCCh---hHHHHHHHHHHHhhhhhhhhhhhhheeeecC
Confidence 45789999999999999999994 34788999999975533 45666777787776 99999999999999
Q ss_pred CeeEEEEEccCCCCHHHHHhh----CCCCCCHHHHHHHHHHHHHHHHHHhhcCCCCCeEecCCCCCCeeeCC--------
Q 005040 496 DFKALVLEFMPNGSLEKWLYS----HNYFLDILQRLNIMIDVGSALEYLHHCHSSAPIIHCDLKPTNILLDE-------- 563 (717)
Q Consensus 496 ~~~~lv~e~~~~g~L~~~l~~----~~~~~~~~~~~~i~~~i~~~l~~LH~~~~~~~ivH~dlk~~Nill~~-------- 563 (717)
+..++||||+++|+|.+++.. ....+++..+..++.|++.||+||| +.+|+||||||+|||++.
T Consensus 140 ~~~~lv~e~~~~g~L~~~l~~~~~~~~~~l~~~~~~~i~~qi~~~L~~lH----~~~ivHrDiKp~NIll~~~~~~~~~~ 215 (365)
T 3e7e_A 140 NGSVLVGELYSYGTLLNAINLYKNTPEKVMPQGLVISFAMRMLYMIEQVH----DCEIIHGDIKPDNFILGNGFLEQDDE 215 (365)
T ss_dssp SCEEEEECCCCSCBHHHHHHHHHTSTTCSCCHHHHHHHHHHHHHHHHHHH----TTTEECCCCSGGGEEECGGGTCC---
T ss_pred CCcEEEEeccCCCcHHHHHHHhhcccccCCCHHHHHHHHHHHHHHHHHHh----hCCeecCCCCHHHEEecccccCcccc
Confidence 999999999999999999974 3456999999999999999999999 689999999999999998
Q ss_pred ---CCcEEEeeeccccccCCCCCceeeeccccCccccCCCccCCCCcCcccchhhHHHHHHHHHhCCCCCCccccCcchH
Q 005040 564 ---NMVAHVSDFGISKLLGEGEDSVIQTMTMATIGYMAPEYGSEGIVSTKCDVYSYGVLLMETFTEKKPTDEMFTGEMSL 640 (717)
Q Consensus 564 ---~~~~kl~Dfgl~~~~~~~~~~~~~~~~~~t~~y~aPE~~~~~~~~~~~Dvws~G~il~el~tg~~p~~~~~~~~~~~ 640 (717)
++.+||+|||+++.+.............||++|+|||++.+..++.++|||||||++|||+||+.||.....+...
T Consensus 216 ~~~~~~~kl~DFG~a~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~elltg~~pf~~~~~~~~~- 294 (365)
T 3e7e_A 216 DDLSAGLALIDLGQSIDMKLFPKGTIFTAKCETSGFQCVEMLSNKPWNYQIDYFGVAATVYCMLFGTYMKVKNEGGECK- 294 (365)
T ss_dssp ---CTTEEECCCTTCEEGGGSCTTEEECCSSCTTSCCCHHHHTTCCBSTHHHHHHHHHHHHHHHHSSCCCEEEETTEEE-
T ss_pred ccccCCEEEeeCchhhhhhccCCCceeeeecCCCCCCChHHhcCCCCCccccHHHHHHHHHHHHhCCCccccCCCCcee-
Confidence 8999999999998765333344455667999999999999999999999999999999999999998653222110
Q ss_pred HHHHHhhCCCchhhhccccchhhhhhhhhhHHHHHHHHHHHhhccCCCCCCC-CCHHHHHHHHHHhHHhhc
Q 005040 641 RRWVKESLPHRLTEVVDANLVREEQAFSDKMDCLFSIMDLALDCCMDTPHKR-IHMTDAAAKLRKIKAKFL 710 (717)
Q Consensus 641 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~cl~~~P~~R-pt~~ev~~~L~~~~~~~~ 710 (717)
....+.. .+ ....+.+++..|+..+|.+| |+++++.+.|+++..+..
T Consensus 295 ---------------~~~~~~~----~~----~~~~~~~~~~~~l~~~p~~r~~~~~~l~~~l~~~l~~~~ 342 (365)
T 3e7e_A 295 ---------------PEGLFRR----LP----HLDMWNEFFHVMLNIPDCHHLPSLDLLRQKLKKVFQQHY 342 (365)
T ss_dssp ---------------ECSCCTT----CS----SHHHHHHHHHHHHCCCCTTCCCCHHHHHHHHHHHHHHHT
T ss_pred ---------------echhccc----cC----cHHHHHHHHHHHcCCCCCCcchHHHHHHHHHHHHHHHhh
Confidence 0011110 01 12346689999999999998 578899999998866543
No 151
>2ozo_A Tyrosine-protein kinase ZAP-70; inactive ZAP-70, tandem SH2, autoinhibition, ITAM, hydrogen bonding network, TCR signaling, transferase; HET: ANP; 2.60A {Homo sapiens}
Probab=100.00 E-value=3.2e-40 Score=371.98 Aligned_cols=262 Identities=23% Similarity=0.401 Sum_probs=208.1
Q ss_pred CCccc-cccccccEEEEEEEec---CCCeEEEEEechhh-HHHHHHHHHHHHHHHhcCCCceeeEeeeeecCCeeEEEEE
Q 005040 429 FNECN-LLGTGGFGSVYKGTLS---DGTNVAIKIFNLQL-ERAFRSFDSECEILRNVRHRNLLKILGSCSNLDFKALVLE 503 (717)
Q Consensus 429 ~~~~~-~lg~G~~g~V~~~~~~---~~~~vavK~~~~~~-~~~~~~~~~e~~~l~~l~hpniv~~~~~~~~~~~~~lv~e 503 (717)
+.+.. .||+|+||.||+|.++ ++..||||+++... ....+.+.+|++++++++||||+++++++.+ +..++|||
T Consensus 337 ~~~~~~~LG~G~fG~Vy~~~~~~~~~~~~vAvK~~~~~~~~~~~~~~~~E~~il~~l~hpniv~l~~~~~~-~~~~lv~E 415 (613)
T 2ozo_A 337 LLIADIELGCGNFGSVRQGVYRMRKKQIDVAIKVLKQGTEKADTEEMMREAQIMHQLDNPYIVRLIGVCQA-EALMLVME 415 (613)
T ss_dssp EEEEEEEEEECSSSEEEEEEEECSSCEEEEEEEECCCCCSSTTHHHHHHHHHHHTTCCCTTBCCEEEEEES-SSEEEEEE
T ss_pred eeEcCcEEecCCCcEEEEEEEecCCCcEEEEEEEcCCCCChHHHHHHHHHHHHHHhCCCCCEeeEEEEecc-CCeEEEEE
Confidence 33344 7999999999999864 56679999997543 3345778999999999999999999999976 56899999
Q ss_pred ccCCCCHHHHHhhCCCCCCHHHHHHHHHHHHHHHHHHhhcCCCCCeEecCCCCCCeeeCCCCcEEEeeeccccccCCCCC
Q 005040 504 FMPNGSLEKWLYSHNYFLDILQRLNIMIDVGSALEYLHHCHSSAPIIHCDLKPTNILLDENMVAHVSDFGISKLLGEGED 583 (717)
Q Consensus 504 ~~~~g~L~~~l~~~~~~~~~~~~~~i~~~i~~~l~~LH~~~~~~~ivH~dlk~~Nill~~~~~~kl~Dfgl~~~~~~~~~ 583 (717)
|+++|+|.+++......+++..+..++.|++.||+||| +.+|+||||||+|||++.++.+||+|||+++.......
T Consensus 416 ~~~~g~L~~~l~~~~~~l~~~~~~~i~~qi~~~L~~LH----~~~iiHrDlkp~NILl~~~~~vkL~DFGla~~~~~~~~ 491 (613)
T 2ozo_A 416 MAGGGPLHKFLVGKREEIPVSNVAELLHQVSMGMKYLE----EKNFVHRNLAARNVLLVNRHYAKISDFGLSKALGADDS 491 (613)
T ss_dssp CCTTCBHHHHHTTCTTTSCHHHHHHHHHHHHHHHHHHH----HTTCCCSCCSGGGEEEEETTEEEECCCSTTTTCC----
T ss_pred eCCCCcHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHH----HCCEEcCcCCHHHEEEcCCCcEEEeeccCcccccCCCc
Confidence 99999999999877777999999999999999999999 67899999999999999999999999999987654322
Q ss_pred c-eeeeccccCccccCCCccCCCCcCcccchhhHHHHHHHHHh-CCCCCCccccCcchHHHHHHhhCCCchhhhccccch
Q 005040 584 S-VIQTMTMATIGYMAPEYGSEGIVSTKCDVYSYGVLLMETFT-EKKPTDEMFTGEMSLRRWVKESLPHRLTEVVDANLV 661 (717)
Q Consensus 584 ~-~~~~~~~~t~~y~aPE~~~~~~~~~~~Dvws~G~il~el~t-g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 661 (717)
. .......+|+.|+|||++.+..++.++|||||||++|||++ |+.||...... .....+.....
T Consensus 492 ~~~~~~~~~~~~~y~APE~~~~~~~~~~sDvwSlGv~l~ellt~G~~Pf~~~~~~--~~~~~i~~~~~------------ 557 (613)
T 2ozo_A 492 YYTARSAGKWPLKWYAPECINFRKFSSRSDVWSYGVTMWEALSYGQKPYKKMKGP--EVMAFIEQGKR------------ 557 (613)
T ss_dssp ----------CCTTSCHHHHHHCCCCHHHHHHHHHHHHHHHHTTSCCTTTTCCSH--HHHHHHHTTCC------------
T ss_pred eeeeccCCCCccceeCHhhhcCCCCCcHHHHHHHHHHHHHHHHCCCCCCCCCCHH--HHHHHHHcCCC------------
Confidence 1 11223345789999999988999999999999999999998 99999764322 22222221110
Q ss_pred hhhhhhhhhHHHHHHHHHHHhhccCCCCCCCCCHHHHHHHHHHhHHhhccchh
Q 005040 662 REEQAFSDKMDCLFSIMDLALDCCMDTPHKRIHMTDAAAKLRKIKAKFLDDVA 714 (717)
Q Consensus 662 ~~~~~~~~~~~~~~~l~~li~~cl~~~P~~Rpt~~ev~~~L~~~~~~~~~~~~ 714 (717)
...+..++.++.++|.+||+.||++||++.++++.|+.+.........
T Consensus 558 -----~~~p~~~~~~l~~li~~cl~~dP~~RPs~~~l~~~L~~~~~~~~~~~~ 605 (613)
T 2ozo_A 558 -----MECPPECPPELYALMSDCWIYKWEDRPDFLTVEQRMRACYYSLASKVE 605 (613)
T ss_dssp -----CCCCTTCCHHHHHHHHHTTCSSTTTSCCHHHHHHHHHHHHHHHSCSCC
T ss_pred -----CCCCCcCCHHHHHHHHHHcCCChhHCcCHHHHHHHHHHHHHHhccccC
Confidence 011124567789999999999999999999999999998776655444
No 152
>2yfx_A Tyrosine-protein kinase receptor; nucleotide-binding, transferase; HET: VGH; 1.70A {Homo sapiens} PDB: 2xp2_A* 3aox_A* 2yhv_A 3lcs_A* 3lct_A* 4dce_A* 2xba_A* 2xb7_A*
Probab=100.00 E-value=5.1e-40 Score=343.45 Aligned_cols=259 Identities=24% Similarity=0.378 Sum_probs=206.0
Q ss_pred hccCCccccccccccEEEEEEEe------cCCCeEEEEEechhh-HHHHHHHHHHHHHHHhcCCCceeeEeeeeecCCee
Q 005040 426 TDEFNECNLLGTGGFGSVYKGTL------SDGTNVAIKIFNLQL-ERAFRSFDSECEILRNVRHRNLLKILGSCSNLDFK 498 (717)
Q Consensus 426 ~~~~~~~~~lg~G~~g~V~~~~~------~~~~~vavK~~~~~~-~~~~~~~~~e~~~l~~l~hpniv~~~~~~~~~~~~ 498 (717)
.++|++.+.||+|+||.||+|.+ .+++.||||++.... ......+.+|+.++++++||||+++++++.+....
T Consensus 29 ~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~ 108 (327)
T 2yfx_A 29 RKNITLIRGLGHGAFGEVYEGQVSGMPNDPSPLQVAVKTLPEVCSEQDELDFLMEALIISKFNHQNIVRCIGVSLQSLPR 108 (327)
T ss_dssp GGGCEEEEECC--CSSCEEEEEC--------CCEEEEEECCSSCCHHHHHHHHHHHHHHHHCCCTTBCCEEEEECSSSSC
T ss_pred hhheEEEEEEcCCCCeeEEEEEEcCCCCCCccceEEEEEeccccchhhHHHHHHHHHHHhhCCCCCCCeEEEEEcCCCCc
Confidence 47899999999999999999984 257789999986432 34456788999999999999999999999999999
Q ss_pred EEEEEccCCCCHHHHHhhCC------CCCCHHHHHHHHHHHHHHHHHHhhcCCCCCeEecCCCCCCeeeCC---CCcEEE
Q 005040 499 ALVLEFMPNGSLEKWLYSHN------YFLDILQRLNIMIDVGSALEYLHHCHSSAPIIHCDLKPTNILLDE---NMVAHV 569 (717)
Q Consensus 499 ~lv~e~~~~g~L~~~l~~~~------~~~~~~~~~~i~~~i~~~l~~LH~~~~~~~ivH~dlk~~Nill~~---~~~~kl 569 (717)
++||||+++|+|.+++.... ..+++..++.++.|++.||.||| +.+|+||||||+||+++. +..+||
T Consensus 109 ~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~i~~qi~~al~~LH----~~~i~H~dlkp~NIli~~~~~~~~~kl 184 (327)
T 2yfx_A 109 FILMELMAGGDLKSFLRETRPRPSQPSSLAMLDLLHVARDIACGCQYLE----ENHFIHRDIAARNCLLTCPGPGRVAKI 184 (327)
T ss_dssp EEEEECCTTEEHHHHHHHTSCCSSSTTSCCHHHHHHHHHHHHHHHHHHH----HTTCCCSCCCGGGEEESCSSTTCCEEE
T ss_pred EEEEecCCCCcHHHHHHhhcccccccccccHHHHHHHHHHHHHHHHHHh----hCCeecCcCCHhHEEEecCCCcceEEE
Confidence 99999999999999998653 34889999999999999999999 678999999999999994 456999
Q ss_pred eeeccccccCCCCCceeeeccccCccccCCCccCCCCcCcccchhhHHHHHHHHHh-CCCCCCccccCcchHHHHHHhhC
Q 005040 570 SDFGISKLLGEGEDSVIQTMTMATIGYMAPEYGSEGIVSTKCDVYSYGVLLMETFT-EKKPTDEMFTGEMSLRRWVKESL 648 (717)
Q Consensus 570 ~Dfgl~~~~~~~~~~~~~~~~~~t~~y~aPE~~~~~~~~~~~Dvws~G~il~el~t-g~~p~~~~~~~~~~~~~~~~~~~ 648 (717)
+|||++................+|+.|+|||++.+..++.++||||||+++|||++ |+.||..... ......+....
T Consensus 185 ~Dfg~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~ellt~g~~p~~~~~~--~~~~~~~~~~~ 262 (327)
T 2yfx_A 185 GDFGMARDIYRASYYRKGGCAMLPVKWMPPEAFMEGIFTSKTDTWSFGVLLWEIFSLGYMPYPSKSN--QEVLEFVTSGG 262 (327)
T ss_dssp CCCHHHHHHHC------CCGGGSCGGGCCHHHHHHCCCCHHHHHHHHHHHHHHHHTTSCCSSTTCCH--HHHHHHHHTTC
T ss_pred CccccccccccccccccCCCcCCCcceeCHhHhcCCCCCchhhHHHHHHHHHHHHcCCCCCCCCcCH--HHHHHHHhcCC
Confidence 99999986644333333344567899999999888889999999999999999998 9999875321 11222222111
Q ss_pred CCchhhhccccchhhhhhhhhhHHHHHHHHHHHhhccCCCCCCCCCHHHHHHHHHHhHH
Q 005040 649 PHRLTEVVDANLVREEQAFSDKMDCLFSIMDLALDCCMDTPHKRIHMTDAAAKLRKIKA 707 (717)
Q Consensus 649 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~cl~~~P~~Rpt~~ev~~~L~~~~~ 707 (717)
.. .....++..+.+++.+||+.||++||++.|+++.|+.+..
T Consensus 263 ~~-----------------~~~~~~~~~l~~li~~~l~~dp~~Rps~~~ll~~l~~~~~ 304 (327)
T 2yfx_A 263 RM-----------------DPPKNCPGPVYRIMTQCWQHQPEDRPNFAIILERIEYCTQ 304 (327)
T ss_dssp CC-----------------CCCTTCCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHHH
T ss_pred CC-----------------CCCCCCCHHHHHHHHHHhcCChhhCcCHHHHHHHHHHHhc
Confidence 00 0111344568899999999999999999999999998865
No 153
>2r5t_A Serine/threonine-protein kinase SGK1; AGC protein kinase, apoptosis, ATP-binding, cytoplasm, endoplasmic reticulum, nucleotide-binding, nucleus; HET: ANP; 1.90A {Homo sapiens} PDB: 3hdm_A* 3hdn_A*
Probab=100.00 E-value=1.9e-40 Score=350.91 Aligned_cols=250 Identities=25% Similarity=0.288 Sum_probs=194.4
Q ss_pred hccCCccccccccccEEEEEEEec-CCCeEEEEEechhh---HHHHHHHHHHHHH-HHhcCCCceeeEeeeeecCCeeEE
Q 005040 426 TDEFNECNLLGTGGFGSVYKGTLS-DGTNVAIKIFNLQL---ERAFRSFDSECEI-LRNVRHRNLLKILGSCSNLDFKAL 500 (717)
Q Consensus 426 ~~~~~~~~~lg~G~~g~V~~~~~~-~~~~vavK~~~~~~---~~~~~~~~~e~~~-l~~l~hpniv~~~~~~~~~~~~~l 500 (717)
.++|++.+.||+|+||.||+|+.+ +++.||+|++.+.. ......+..|..+ ++.++||||+++++++.+.+..|+
T Consensus 37 ~~~y~~~~~lG~G~fg~V~~~~~~~~~~~~AiK~~~~~~~~~~~~~~~~~~e~~~ll~~~~hp~Iv~l~~~~~~~~~~~l 116 (373)
T 2r5t_A 37 PSDFHFLKVIGKGSFGKVLLARHKAEEVFYAVKVLQKKAILKKKEEKHIMSERNVLLKNVKHPFLVGLHFSFQTADKLYF 116 (373)
T ss_dssp GGGEEEEEEEECCTTCEEEEEEETTTCCEEEEEEEEGGGBC-------------CCBCCCCCTTBCCEEEEEECSSEEEE
T ss_pred hhheEEEEEEeeCCCeEEEEEEEcCCCCEEEEEEEEHHHhhhhHHHHHHHHHHHHHHHhCCCCCCCCEEEEEEeCCEEEE
Confidence 368999999999999999999976 68899999997654 2233456667776 567899999999999999999999
Q ss_pred EEEccCCCCHHHHHhhCCCCCCHHHHHHHHHHHHHHHHHHhhcCCCCCeEecCCCCCCeeeCCCCcEEEeeeccccccCC
Q 005040 501 VLEFMPNGSLEKWLYSHNYFLDILQRLNIMIDVGSALEYLHHCHSSAPIIHCDLKPTNILLDENMVAHVSDFGISKLLGE 580 (717)
Q Consensus 501 v~e~~~~g~L~~~l~~~~~~~~~~~~~~i~~~i~~~l~~LH~~~~~~~ivH~dlk~~Nill~~~~~~kl~Dfgl~~~~~~ 580 (717)
||||+++|+|.+++.... .+++..+..++.|++.||+||| +.+|+||||||+||+++.++++||+|||+++....
T Consensus 117 v~E~~~gg~L~~~l~~~~-~~~~~~~~~~~~qi~~aL~~LH----~~givHrDlkp~NIll~~~g~ikL~DFG~a~~~~~ 191 (373)
T 2r5t_A 117 VLDYINGGELFYHLQRER-CFLEPRARFYAAEIASALGYLH----SLNIVYRDLKPENILLDSQGHIVLTDFGLCKENIE 191 (373)
T ss_dssp EEECCCSCBHHHHHHHHS-SCCHHHHHHHHHHHHHHHHHHH----HTTCCCCCCCGGGEEECTTSCEEECCCCBCGGGBC
T ss_pred EEeCCCCCcHHHHHHhcC-CCCHHHHHHHHHHHHHHHHHHH----HCCceecCCCHHHEEECCCCCEEEeeCcccccccc
Confidence 999999999999998654 3889999999999999999999 67899999999999999999999999999986432
Q ss_pred CCCceeeeccccCccccCCCccCCCCcCcccchhhHHHHHHHHHhCCCCCCccccCcchHHHHHHhhCCCchhhhccccc
Q 005040 581 GEDSVIQTMTMATIGYMAPEYGSEGIVSTKCDVYSYGVLLMETFTEKKPTDEMFTGEMSLRRWVKESLPHRLTEVVDANL 660 (717)
Q Consensus 581 ~~~~~~~~~~~~t~~y~aPE~~~~~~~~~~~Dvws~G~il~el~tg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 660 (717)
... .....+||+.|+|||++.+..++.++||||+||++|||++|+.||...... ...+.+.. ...
T Consensus 192 ~~~--~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~ell~G~~Pf~~~~~~--~~~~~i~~-----------~~~ 256 (373)
T 2r5t_A 192 HNS--TTSTFCGTPEYLAPEVLHKQPYDRTVDWWCLGAVLYEMLYGLPPFYSRNTA--EMYDNILN-----------KPL 256 (373)
T ss_dssp CCC--CCCSBSCCCCCCCHHHHTTCCCCTHHHHHHHHHHHHHHHHSSCTTCCSBHH--HHHHHHHH-----------SCC
T ss_pred CCC--ccccccCCccccCHHHhCCCCCCchhhhHHHHHHHHHHHcCCCCCCCCCHH--HHHHHHHh-----------ccc
Confidence 221 234557999999999999999999999999999999999999999753211 11111111 000
Q ss_pred hhhhhhhhhhHHHHHHHHHHHhhccCCCCCCCCCHHHHHHHH
Q 005040 661 VREEQAFSDKMDCLFSIMDLALDCCMDTPHKRIHMTDAAAKL 702 (717)
Q Consensus 661 ~~~~~~~~~~~~~~~~l~~li~~cl~~~P~~Rpt~~ev~~~L 702 (717)
. + ...++.++.+++.+||+.||++||++.+..+.+
T Consensus 257 ~-----~--~~~~~~~~~~li~~lL~~dp~~R~~~~~~~~~i 291 (373)
T 2r5t_A 257 Q-----L--KPNITNSARHLLEGLLQKDRTKRLGAKDDFMEI 291 (373)
T ss_dssp C-----C--CSSSCHHHHHHHHHHTCSSGGGSTTTTTTHHHH
T ss_pred C-----C--CCCCCHHHHHHHHHHcccCHHhCCCCCCCHHHH
Confidence 0 0 012345688999999999999999986544433
No 154
>2eue_A Carbon catabolite derepressing protein kinase; kinase domain; 2.20A {Saccharomyces cerevisiae} PDB: 3fam_A 3hyh_A 3dae_A 2fh9_A 3mn3_A
Probab=100.00 E-value=3.6e-40 Score=335.77 Aligned_cols=245 Identities=24% Similarity=0.373 Sum_probs=180.9
Q ss_pred ccCCccccccccccEEEEEEEec-CCCeEEEEEechhh---HHHHHHHHHHHHHHHhcCCCceeeEeeeeecCCeeEEEE
Q 005040 427 DEFNECNLLGTGGFGSVYKGTLS-DGTNVAIKIFNLQL---ERAFRSFDSECEILRNVRHRNLLKILGSCSNLDFKALVL 502 (717)
Q Consensus 427 ~~~~~~~~lg~G~~g~V~~~~~~-~~~~vavK~~~~~~---~~~~~~~~~e~~~l~~l~hpniv~~~~~~~~~~~~~lv~ 502 (717)
++|++.+.||+|+||.||+|... +++.||+|++.... ....+.+.+|+++++.++||||+++++++.+.+..++||
T Consensus 13 ~~y~i~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~lv~ 92 (275)
T 2eue_A 13 GNYQIVKTLGEGSFAKVKLAYHTTTGQKVALKIINKKVLAKSDMQGRIEREISYLRLLRHPHIIKLYDVIKSKDEIIMVI 92 (275)
T ss_dssp CCBCCCC---------EEEEECTTTCCEEEEEEECSCC-----CHHHHHHHHHHHHHCCCTTBCCEEEEEECSSCEEEEE
T ss_pred cceEEEEEEEcCCCEEEEEEEECCCCCEEEEEEEEhhhcchHHHHHHHHHHHHHHHhCCCCCeEEEEEEEecCCeEEEEe
Confidence 68999999999999999999864 78999999986542 233467889999999999999999999999999999999
Q ss_pred EccCCCCHHHHHhhCCCCCCHHHHHHHHHHHHHHHHHHhhcCCCCCeEecCCCCCCeeeCCCCcEEEeeeccccccCCCC
Q 005040 503 EFMPNGSLEKWLYSHNYFLDILQRLNIMIDVGSALEYLHHCHSSAPIIHCDLKPTNILLDENMVAHVSDFGISKLLGEGE 582 (717)
Q Consensus 503 e~~~~g~L~~~l~~~~~~~~~~~~~~i~~~i~~~l~~LH~~~~~~~ivH~dlk~~Nill~~~~~~kl~Dfgl~~~~~~~~ 582 (717)
||+ +++|.+++.... .+++..+..++.|++.||.||| +.+|+||||||+||+++.++.+||+|||++.......
T Consensus 93 e~~-~~~l~~~~~~~~-~~~~~~~~~~~~~i~~~l~~LH----~~~i~H~dikp~Nil~~~~~~~kl~Dfg~~~~~~~~~ 166 (275)
T 2eue_A 93 EYA-GNELFDYIVQRD-KMSEQEARRFFQQIISAVEYCH----RHKIVHRDLKPENLLLDEHLNVKIADFGLSNIMTDGN 166 (275)
T ss_dssp ECC-CEEHHHHHHTSS-SCCHHHHHHHHHHHHHHHHHHH----HTTCCCCCCSGGGEEECTTSCEEECCSSCC-------
T ss_pred hhc-CCcHHHHHHhcC-CCCHHHHHHHHHHHHHHHHHHH----HCCCeeccCChHhEEECCCCCEEEeecccceeccCcc
Confidence 999 678988887654 4899999999999999999999 6789999999999999999999999999998664332
Q ss_pred CceeeeccccCccccCCCccCCCCc-CcccchhhHHHHHHHHHhCCCCCCccccCcchHHHHHHhhCCCchhhhccccch
Q 005040 583 DSVIQTMTMATIGYMAPEYGSEGIV-STKCDVYSYGVLLMETFTEKKPTDEMFTGEMSLRRWVKESLPHRLTEVVDANLV 661 (717)
Q Consensus 583 ~~~~~~~~~~t~~y~aPE~~~~~~~-~~~~Dvws~G~il~el~tg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 661 (717)
. .....||+.|+|||.+.+..+ +.++||||+|+++|||++|+.||...... .....+.....
T Consensus 167 ~---~~~~~~t~~y~aPE~~~~~~~~~~~~Di~slG~il~~l~~g~~pf~~~~~~--~~~~~~~~~~~------------ 229 (275)
T 2eue_A 167 F---LKTSCGSPNYAAPEVISGKLYAGPEVDVWSCGVILYVMLCRRLPFDDESIP--VLFKNISNGVY------------ 229 (275)
T ss_dssp -----------CTTCCHHHHCC-----THHHHHHHHHHHHHHHHSSCSSCCSSHH--HHHHHHHHTCC------------
T ss_pred c---ccCCCCCcCcCCceeeeCCCCCCcccchHHHHHHHHHHHhCCCCCCCCCHH--HHHHHHHhCCC------------
Confidence 1 233468999999998887765 78999999999999999999999753211 11111111100
Q ss_pred hhhhhhhhhHHHHHHHHHHHhhccCCCCCCCCCHHHHHH
Q 005040 662 REEQAFSDKMDCLFSIMDLALDCCMDTPHKRIHMTDAAA 700 (717)
Q Consensus 662 ~~~~~~~~~~~~~~~l~~li~~cl~~~P~~Rpt~~ev~~ 700 (717)
..+..++.++.+++.+||+.||++|||++|+++
T Consensus 230 ------~~~~~~~~~~~~li~~~l~~dP~~Rps~~e~l~ 262 (275)
T 2eue_A 230 ------TLPKFLSPGAAGLIKRMLIVNPLNRISIHEIMQ 262 (275)
T ss_dssp ------CCCTTSCHHHHHHHHHHSCSSGGGSCCHHHHTT
T ss_pred ------CCCccCCHHHHHHHHHHhhcCHhHCCCHHHHhh
Confidence 001123456889999999999999999999976
No 155
>2ac3_A MAP kinase-interacting serine/threonine kinase 2; DFD motif, transferase; 2.10A {Homo sapiens} PDB: 2hw7_A* 2ac5_A* 2hw6_A
Probab=100.00 E-value=2.4e-40 Score=344.30 Aligned_cols=266 Identities=23% Similarity=0.299 Sum_probs=197.5
Q ss_pred ccCCcc-ccccccccEEEEEEEec-CCCeEEEEEechhhHHHHHHHHHHHHHHHhc-CCCceeeEeeeeecCCeeEEEEE
Q 005040 427 DEFNEC-NLLGTGGFGSVYKGTLS-DGTNVAIKIFNLQLERAFRSFDSECEILRNV-RHRNLLKILGSCSNLDFKALVLE 503 (717)
Q Consensus 427 ~~~~~~-~~lg~G~~g~V~~~~~~-~~~~vavK~~~~~~~~~~~~~~~e~~~l~~l-~hpniv~~~~~~~~~~~~~lv~e 503 (717)
+.|++. +.||+|+||.||+|... +++.||||++........+.+.+|++++.++ +||||+++++++.+.+..++|||
T Consensus 12 ~~y~i~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~E~~~l~~~~~h~~i~~~~~~~~~~~~~~lv~e 91 (316)
T 2ac3_A 12 DVYQLQEDVLGEGAHARVQTCINLITSQEYAVKIIEKQPGHIRSRVFREVEMLYQCQGHRNVLELIEFFEEEDRFYLVFE 91 (316)
T ss_dssp TSCEECCCCCCCCSSEEEEEEECSSSCCEEEEEEEECCSSCCHHHHHHHHHHHHHTCCCTTBCCEEEEEEETTEEEEEEE
T ss_pred eeEEecCceecCCceEEEEEEEEcCCCcEEEEEEEeeCcchhHHHHHHHHHHHHHhcCCCCeeeEEEEEeeCCEEEEEEE
Confidence 567774 78999999999999965 7999999999765544456788999999985 79999999999999999999999
Q ss_pred ccCCCCHHHHHhhCCCCCCHHHHHHHHHHHHHHHHHHhhcCCCCCeEecCCCCCCeeeCCCCc---EEEeeeccccccCC
Q 005040 504 FMPNGSLEKWLYSHNYFLDILQRLNIMIDVGSALEYLHHCHSSAPIIHCDLKPTNILLDENMV---AHVSDFGISKLLGE 580 (717)
Q Consensus 504 ~~~~g~L~~~l~~~~~~~~~~~~~~i~~~i~~~l~~LH~~~~~~~ivH~dlk~~Nill~~~~~---~kl~Dfgl~~~~~~ 580 (717)
|+++|+|.+++.... .+++..+..++.|++.||+||| +.+|+||||||+||+++.++. +||+|||++.....
T Consensus 92 ~~~~~~L~~~l~~~~-~~~~~~~~~i~~qi~~~l~~lH----~~~ivH~dlkp~Nil~~~~~~~~~~kl~Dfg~~~~~~~ 166 (316)
T 2ac3_A 92 KMRGGSILSHIHKRR-HFNELEASVVVQDVASALDFLH----NKGIAHRDLKPENILCEHPNQVSPVKICDFDLGSGIKL 166 (316)
T ss_dssp CCTTCBHHHHHHHHS-SCCHHHHHHHHHHHHHHHHHHH----HTTCCCCCCCGGGEEESCSSSSCSEEECCTTCCC----
T ss_pred cCCCCcHHHHHhccC-CCCHHHHHHHHHHHHHHHHHHH----hCCceeCCCCHHHEEEccCCCcCceEEEEccCcccccc
Confidence 999999999998654 4899999999999999999999 678999999999999998776 99999999876542
Q ss_pred CCC-----ceeeeccccCccccCCCccCC-----CCcCcccchhhHHHHHHHHHhCCCCCCccccCcchHHHHHHhhCCC
Q 005040 581 GED-----SVIQTMTMATIGYMAPEYGSE-----GIVSTKCDVYSYGVLLMETFTEKKPTDEMFTGEMSLRRWVKESLPH 650 (717)
Q Consensus 581 ~~~-----~~~~~~~~~t~~y~aPE~~~~-----~~~~~~~Dvws~G~il~el~tg~~p~~~~~~~~~~~~~~~~~~~~~ 650 (717)
... ........||+.|+|||++.+ ..++.++||||+||++|||++|+.||......+.... ......
T Consensus 167 ~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~~~~~DiwslG~il~~l~~g~~pf~~~~~~~~~~~---~~~~~~ 243 (316)
T 2ac3_A 167 NGDCSPISTPELLTPCGSAEYMAPEVVEAFSEEASIYDKRCDLWSLGVILYILLSGYPPFVGRCGSDCGWD---RGEACP 243 (316)
T ss_dssp ---------------CCSGGGCCHHHHHHTSHHHHHHTTTHHHHHHHHHHHHHHHSSCSCCCCCCSCSCC-------CCH
T ss_pred CCccccccccccccccCCcCccChHHhhcccccccCCCcccccHhHHHHHHHHHHCCCCCccccccccccc---ccccch
Confidence 211 111223458999999998764 5689999999999999999999999976433221000 000000
Q ss_pred chhhhccccchhhhhhhh--hhHHHHHHHHHHHhhccCCCCCCCCCHHHHHH
Q 005040 651 RLTEVVDANLVREEQAFS--DKMDCLFSIMDLALDCCMDTPHKRIHMTDAAA 700 (717)
Q Consensus 651 ~~~~~~~~~~~~~~~~~~--~~~~~~~~l~~li~~cl~~~P~~Rpt~~ev~~ 700 (717)
.....+...+.......+ ....++.++.+++.+||+.||++|||+.|+++
T Consensus 244 ~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~Rps~~e~l~ 295 (316)
T 2ac3_A 244 ACQNMLFESIQEGKYEFPDKDWAHISCAAKDLISKLLVRDAKQRLSAAQVLQ 295 (316)
T ss_dssp HHHHHHHHHHHHCCCCCCHHHHTTSCHHHHHHHHHHSCSSTTTSCCHHHHHH
T ss_pred hHHHHHHHHHhccCcccCchhcccCCHHHHHHHHHHhhCChhhCCCHHHHhc
Confidence 000000000000000000 11234567899999999999999999999987
No 156
>4agu_A Cyclin-dependent kinase-like 1; transferase, phospho-mimetic; HET: D15; 2.40A {Homo sapiens}
Probab=100.00 E-value=8e-40 Score=339.56 Aligned_cols=265 Identities=21% Similarity=0.261 Sum_probs=199.4
Q ss_pred ccCCccccccccccEEEEEEEec-CCCeEEEEEechhh--HHHHHHHHHHHHHHHhcCCCceeeEeeeeecCCeeEEEEE
Q 005040 427 DEFNECNLLGTGGFGSVYKGTLS-DGTNVAIKIFNLQL--ERAFRSFDSECEILRNVRHRNLLKILGSCSNLDFKALVLE 503 (717)
Q Consensus 427 ~~~~~~~~lg~G~~g~V~~~~~~-~~~~vavK~~~~~~--~~~~~~~~~e~~~l~~l~hpniv~~~~~~~~~~~~~lv~e 503 (717)
++|++.+.||+|+||.||+|... +|+.||+|++.... ....+.+.+|++++++++||||+++++++.+.+..++|||
T Consensus 3 ~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~~~~~~lv~e 82 (311)
T 4agu_A 3 EKYEKIGKIGEGSYGVVFKCRNRDTGQIVAIKKFLESEDDPVIKKIALREIRMLKQLKHPNLVNLLEVFRRKRRLHLVFE 82 (311)
T ss_dssp CCEEEEEEEEECSSEEEEEEEETTTCCEEEEEEECCCCC-HHHHHHHHHHHHHHHHCCCTTBCCEEEEEEETTEEEEEEE
T ss_pred ccceEeeEEeecCCeEEEEEEeCCCCcEEEEEEeeccccchHHHHHHHHHHHHHHhCCCCCccchhheeecCCeEEEEEE
Confidence 67999999999999999999976 68999999885443 3335668889999999999999999999999999999999
Q ss_pred ccCCCCHHHHHhhCCCCCCHHHHHHHHHHHHHHHHHHhhcCCCCCeEecCCCCCCeeeCCCCcEEEeeeccccccCCCCC
Q 005040 504 FMPNGSLEKWLYSHNYFLDILQRLNIMIDVGSALEYLHHCHSSAPIIHCDLKPTNILLDENMVAHVSDFGISKLLGEGED 583 (717)
Q Consensus 504 ~~~~g~L~~~l~~~~~~~~~~~~~~i~~~i~~~l~~LH~~~~~~~ivH~dlk~~Nill~~~~~~kl~Dfgl~~~~~~~~~ 583 (717)
|+++++|.+++.... .+++..+..++.|++.||+||| +.+|+||||||+||+++.++.+||+|||++........
T Consensus 83 ~~~~~~l~~~~~~~~-~~~~~~~~~i~~~l~~~l~~lH----~~~ivH~dlkp~Nil~~~~~~~kl~Dfg~~~~~~~~~~ 157 (311)
T 4agu_A 83 YCDHTVLHELDRYQR-GVPEHLVKSITWQTLQAVNFCH----KHNCIHRDVKPENILITKHSVIKLCDFGFARLLTGPSD 157 (311)
T ss_dssp CCSEEHHHHHHHTSS-CCCHHHHHHHHHHHHHHHHHHH----HTTEECCCCSGGGEEECTTSCEEECCCTTCEECC----
T ss_pred eCCCchHHHHHhhhc-CCCHHHHHHHHHHHHHHHHHHH----HCCCcCCCCChhhEEEcCCCCEEEeeCCCchhccCccc
Confidence 999999998877553 4899999999999999999999 67899999999999999999999999999987653322
Q ss_pred ceeeeccccCccccCCCccCC-CCcCcccchhhHHHHHHHHHhCCCCCCccccCcchHHHHHHhhCCC---chhhhccc-
Q 005040 584 SVIQTMTMATIGYMAPEYGSE-GIVSTKCDVYSYGVLLMETFTEKKPTDEMFTGEMSLRRWVKESLPH---RLTEVVDA- 658 (717)
Q Consensus 584 ~~~~~~~~~t~~y~aPE~~~~-~~~~~~~Dvws~G~il~el~tg~~p~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~- 658 (717)
......+|+.|+|||++.+ ..++.++||||+|+++|||++|+.||......+ ....+...... ........
T Consensus 158 --~~~~~~~~~~y~aPE~~~~~~~~~~~~Di~slG~il~~l~~g~~p~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~ 233 (311)
T 4agu_A 158 --YYDDEVATRWYRSPELLVGDTQYGPPVDVWAIGCVFAELLSGVPLWPGKSDVD--QLYLIRKTLGDLIPRHQQVFSTN 233 (311)
T ss_dssp ----------GGGCCHHHHHTCSCCCTHHHHHHHHHHHHHHHHSSCSCCCSSHHH--HHHHHHHHHCSCCHHHHHHHHTC
T ss_pred --ccCCCcCCccccChHHHhcCCCCCcchhhHHHHHHHHHHHhCCCCCCCCCHHH--HHHHHHHHhcccccccccccccc
Confidence 1234568999999998765 678999999999999999999999997643221 11111111000 00000000
Q ss_pred ------cchh---hhhhhhhhHHHHHHHHHHHhhccCCCCCCCCCHHHHHH
Q 005040 659 ------NLVR---EEQAFSDKMDCLFSIMDLALDCCMDTPHKRIHMTDAAA 700 (717)
Q Consensus 659 ------~~~~---~~~~~~~~~~~~~~l~~li~~cl~~~P~~Rpt~~ev~~ 700 (717)
.... ..........++.++.+++.+||+.||++|||++|+++
T Consensus 234 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~Rpt~~ell~ 284 (311)
T 4agu_A 234 QYFSGVKIPDPEDMEPLELKFPNISYPALGLLKGCLHMDPTERLTCEQLLH 284 (311)
T ss_dssp GGGTTCCCCCCSSCCCHHHHCTTCCHHHHHHHHHHCCSSTTTSCCHHHHHT
T ss_pred cccccCcCCCccccchhhhhcccccHHHHHHHHHHccCChhhcCCHHHHhc
Confidence 0000 00000011234567889999999999999999999985
No 157
>3is5_A Calcium-dependent protein kinase; CDPK, structural genomics, parasitology, structural genomics consortium, SGC, ATP-binding, nucleotide-binding; HET: ANP; 2.55A {Toxoplasma gondii}
Probab=100.00 E-value=3.2e-40 Score=337.85 Aligned_cols=250 Identities=26% Similarity=0.332 Sum_probs=197.9
Q ss_pred hccCCccccccccccEEEEEEEec-CCCeEEEEEechhh-HHHHHHHHHHHHHHHhcCCCceeeEeeeeecCCeeEEEEE
Q 005040 426 TDEFNECNLLGTGGFGSVYKGTLS-DGTNVAIKIFNLQL-ERAFRSFDSECEILRNVRHRNLLKILGSCSNLDFKALVLE 503 (717)
Q Consensus 426 ~~~~~~~~~lg~G~~g~V~~~~~~-~~~~vavK~~~~~~-~~~~~~~~~e~~~l~~l~hpniv~~~~~~~~~~~~~lv~e 503 (717)
.++|.+.+.||+|+||.||+|... +++.||+|++.... ....+.+.+|++++++++||||+++++++.+....++|||
T Consensus 21 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~E~~~l~~l~hp~iv~~~~~~~~~~~~~lv~e 100 (285)
T 3is5_A 21 DDLFIFKRKLGSGAFGDVHLVEERSSGLERVIKTINKDRSQVPMEQIEAEIEVLKSLDHPNIIKIFEVFEDYHNMYIVME 100 (285)
T ss_dssp HHHEEEEEEEEECSSCEEEEEEETTTCCEEEEEEEEGGGCCSCHHHHHHHHHHHHTCCCTTBCCEEEEEECSSEEEEEEC
T ss_pred hhheeecceeccCCCeEEEEEEEccCCceEEEEEeeccccchhHHHHHHHHHHHHhCCCchHHhHHHheecCCeEEEEEE
Confidence 368999999999999999999975 78999999987654 2345678899999999999999999999999999999999
Q ss_pred ccCCCCHHHHHhhC---CCCCCHHHHHHHHHHHHHHHHHHhhcCCCCCeEecCCCCCCeee---CCCCcEEEeeeccccc
Q 005040 504 FMPNGSLEKWLYSH---NYFLDILQRLNIMIDVGSALEYLHHCHSSAPIIHCDLKPTNILL---DENMVAHVSDFGISKL 577 (717)
Q Consensus 504 ~~~~g~L~~~l~~~---~~~~~~~~~~~i~~~i~~~l~~LH~~~~~~~ivH~dlk~~Nill---~~~~~~kl~Dfgl~~~ 577 (717)
|+++|+|.+++... ...+++..+..++.|++.||+||| +.+|+||||||+||++ +.++.+||+|||++..
T Consensus 101 ~~~~~~L~~~l~~~~~~~~~~~~~~~~~i~~qi~~~L~~LH----~~~ivH~dikp~NIl~~~~~~~~~~kl~Dfg~a~~ 176 (285)
T 3is5_A 101 TCEGGELLERIVSAQARGKALSEGYVAELMKQMMNALAYFH----SQHVVHKDLKPENILFQDTSPHSPIKIIDFGLAEL 176 (285)
T ss_dssp CCSCCBHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHH----HTTCCCCCCSGGGEEESSSSTTCCEEECCCCCCCC
T ss_pred eCCCCcHHHHHHhhhhcccCCCHHHHHHHHHHHHHHHHHHH----hCCEEECCCCHHHEEEecCCCCCCEEEEeeeccee
Confidence 99999999998642 356899999999999999999999 6789999999999999 4568899999999987
Q ss_pred cCCCCCceeeeccccCccccCCCccCCCCcCcccchhhHHHHHHHHHhCCCCCCccccCcchHHHHHHhhCCCchhhhcc
Q 005040 578 LGEGEDSVIQTMTMATIGYMAPEYGSEGIVSTKCDVYSYGVLLMETFTEKKPTDEMFTGEMSLRRWVKESLPHRLTEVVD 657 (717)
Q Consensus 578 ~~~~~~~~~~~~~~~t~~y~aPE~~~~~~~~~~~Dvws~G~il~el~tg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 657 (717)
..... ......||+.|+|||.+. +.++.++||||+|+++|||++|+.||...... ..........+.
T Consensus 177 ~~~~~---~~~~~~~t~~y~aPE~~~-~~~~~~~Di~slG~il~~ll~g~~pf~~~~~~--~~~~~~~~~~~~------- 243 (285)
T 3is5_A 177 FKSDE---HSTNAAGTALYMAPEVFK-RDVTFKCDIWSAGVVMYFLLTGCLPFTGTSLE--EVQQKATYKEPN------- 243 (285)
T ss_dssp -------------CTTGGGCCHHHHT-TCCCHHHHHHHHHHHHHHHHHSSCSSCCSSHH--HHHHHHHHCCCC-------
T ss_pred cCCcc---cCcCcccccCcCChHHhc-cCCCcccCeehHHHHHHHHHhCCCCCCCCCHH--HHHhhhccCCcc-------
Confidence 64322 123456899999999875 56899999999999999999999999763221 111111111000
Q ss_pred ccchhhhhhhhhhHHHHHHHHHHHhhccCCCCCCCCCHHHHHH
Q 005040 658 ANLVREEQAFSDKMDCLFSIMDLALDCCMDTPHKRIHMTDAAA 700 (717)
Q Consensus 658 ~~~~~~~~~~~~~~~~~~~l~~li~~cl~~~P~~Rpt~~ev~~ 700 (717)
... ....++.++.+++.+||+.||++|||+.|+++
T Consensus 244 --~~~------~~~~~~~~~~~li~~~L~~dP~~Rps~~e~l~ 278 (285)
T 3is5_A 244 --YAV------ECRPLTPQAVDLLKQMLTKDPERRPSAAQVLH 278 (285)
T ss_dssp --CCC--------CCCCHHHHHHHHHHTCSCTTTSCCHHHHHT
T ss_pred --ccc------ccCcCCHHHHHHHHHHccCChhhCcCHHHHhc
Confidence 000 00112456789999999999999999999985
No 158
>4ejn_A RAC-alpha serine/threonine-protein kinase; AKT1, autoinhibition, allosteric inhibitor, kinase inhibitor hydrophobic collapase, ATPase; HET: 0R4; 2.19A {Homo sapiens} PDB: 3o96_A*
Probab=100.00 E-value=2e-40 Score=361.32 Aligned_cols=249 Identities=22% Similarity=0.251 Sum_probs=196.0
Q ss_pred hccCCccccccccccEEEEEEEec-CCCeEEEEEechhh---HHHHHHHHHHHHHHHhcCCCceeeEeeeeecCCeeEEE
Q 005040 426 TDEFNECNLLGTGGFGSVYKGTLS-DGTNVAIKIFNLQL---ERAFRSFDSECEILRNVRHRNLLKILGSCSNLDFKALV 501 (717)
Q Consensus 426 ~~~~~~~~~lg~G~~g~V~~~~~~-~~~~vavK~~~~~~---~~~~~~~~~e~~~l~~l~hpniv~~~~~~~~~~~~~lv 501 (717)
.++|++.+.||+|+||.||+|... +|+.||||++.... ......+.+|+++++.++||||+++++++.+.+..++|
T Consensus 147 ~~~y~~~~~lG~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~l~~~~~~~~~~~lv 226 (446)
T 4ejn_A 147 MNEFEYLKLLGKGTFGKVILVKEKATGRYYAMKILKKEVIVAKDEVAHTLTENRVLQNSRHPFLTALKYSFQTHDRLCFV 226 (446)
T ss_dssp GGGEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEEHHHHC-------------CCCCCSCTTSCCEEEEEEETTEEEEE
T ss_pred hHHcEEeEEEeeCcCEEEEEEEEcCCCCEEEEEEEEhhhhhhhHHHHHHHHHHHHHHhCCCCeEeeEEEEEeeCCEEEEE
Confidence 478999999999999999999975 79999999998653 33345678899999999999999999999999999999
Q ss_pred EEccCCCCHHHHHhhCCCCCCHHHHHHHHHHHHHHHHHHhhcCCCCCeEecCCCCCCeeeCCCCcEEEeeeccccccCCC
Q 005040 502 LEFMPNGSLEKWLYSHNYFLDILQRLNIMIDVGSALEYLHHCHSSAPIIHCDLKPTNILLDENMVAHVSDFGISKLLGEG 581 (717)
Q Consensus 502 ~e~~~~g~L~~~l~~~~~~~~~~~~~~i~~~i~~~l~~LH~~~~~~~ivH~dlk~~Nill~~~~~~kl~Dfgl~~~~~~~ 581 (717)
|||+++|+|.+++.... .+++..+..++.|++.||+|||+ ..+|+||||||+|||++.++.+||+|||+++.....
T Consensus 227 ~e~~~~~~L~~~l~~~~-~~~~~~~~~~~~qi~~aL~~LH~---~~giiHrDlkp~NIll~~~~~~kl~DFG~a~~~~~~ 302 (446)
T 4ejn_A 227 MEYANGGELFFHLSRER-VFSEDRARFYGAEIVSALDYLHS---EKNVVYRDLKLENLMLDKDGHIKITDFGLCKEGIKD 302 (446)
T ss_dssp ECCCSSCBHHHHHHHHS-CCCHHHHHHHHHHHHHHHHHHHH---HTCCCCCCCCGGGEEECSSSCEEECCCCCCCTTCC-
T ss_pred EeeCCCCcHHHHHHhcC-CCCHHHHHHHHHHHHHHHHHHhh---cCCEEECCCCHHHEEECCCCCEEEccCCCceeccCC
Confidence 99999999999998654 48999999999999999999993 178999999999999999999999999999864322
Q ss_pred CCceeeeccccCccccCCCccCCCCcCcccchhhHHHHHHHHHhCCCCCCccccCcchHHHHHHhhCCCchhhhccccch
Q 005040 582 EDSVIQTMTMATIGYMAPEYGSEGIVSTKCDVYSYGVLLMETFTEKKPTDEMFTGEMSLRRWVKESLPHRLTEVVDANLV 661 (717)
Q Consensus 582 ~~~~~~~~~~~t~~y~aPE~~~~~~~~~~~Dvws~G~il~el~tg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 661 (717)
. .......||+.|+|||++.+..++.++|||||||++|||++|+.||..... ......+..... .+
T Consensus 303 ~--~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~ell~g~~Pf~~~~~--~~~~~~i~~~~~---------~~- 368 (446)
T 4ejn_A 303 G--ATMKTFCGTPEYLAPEVLEDNDYGRAVDWWGLGVVMYEMMCGRLPFYNQDH--EKLFELILMEEI---------RF- 368 (446)
T ss_dssp ------CCSSSCGGGCCHHHHHTSCCCTHHHHHHHHHHHHHHHHSSCSSCCSSH--HHHHHHHHHCCC---------CC-
T ss_pred C--cccccccCCccccCHhhcCCCCCCCccchhhhHHHHHHHhhCCCCCCCCCH--HHHHHHHHhCCC---------CC-
Confidence 2 123446799999999999999999999999999999999999999965321 111111111000 00
Q ss_pred hhhhhhhhhHHHHHHHHHHHhhccCCCCCCCC-----CHHHHHH
Q 005040 662 REEQAFSDKMDCLFSIMDLALDCCMDTPHKRI-----HMTDAAA 700 (717)
Q Consensus 662 ~~~~~~~~~~~~~~~l~~li~~cl~~~P~~Rp-----t~~ev~~ 700 (717)
+..++.++.+++.+||+.||++|| +++|+++
T Consensus 369 --------p~~~~~~~~~li~~~L~~dP~~R~~~~~~t~~ell~ 404 (446)
T 4ejn_A 369 --------PRTLGPEAKSLLSGLLKKDPKQRLGGGSEDAKEIMQ 404 (446)
T ss_dssp --------CTTSCHHHHHHHHHHTCSSTTTSTTCSTTTHHHHHT
T ss_pred --------CccCCHHHHHHHHHHcccCHHHhCCCCCCCHHHHHh
Confidence 112345688999999999999999 9999875
No 159
>2jii_A Serine/threonine-protein kinase VRK3 molecule: VA related kinase 3; transferase, pseudo kinase domain, vaccinia related kinase, ATP-binding; 2.00A {Homo sapiens}
Probab=100.00 E-value=1.4e-40 Score=351.30 Aligned_cols=265 Identities=12% Similarity=0.119 Sum_probs=208.3
Q ss_pred ccCCccccccccccEEEEEEEecC---------CCeEEEEEechhhHHHHHHHHHHHHHHHhcCCCceee----------
Q 005040 427 DEFNECNLLGTGGFGSVYKGTLSD---------GTNVAIKIFNLQLERAFRSFDSECEILRNVRHRNLLK---------- 487 (717)
Q Consensus 427 ~~~~~~~~lg~G~~g~V~~~~~~~---------~~~vavK~~~~~~~~~~~~~~~e~~~l~~l~hpniv~---------- 487 (717)
++|++.+.||+|+||.||+|.... ++.||+|++... +.+.+|++++++++||||++
T Consensus 42 ~~y~~~~~lg~G~~g~Vy~~~~~~t~~~~~~~~~~~vavK~~~~~-----~~~~~E~~~l~~l~h~niv~~~~~~~~~~~ 116 (352)
T 2jii_A 42 RQWKLKSFQTRDNQGILYEAAPTSTLTCDSGPQKQKFSLKLDAKD-----GRLFNEQNFFQRAAKPLQVNKWKKLYSTPL 116 (352)
T ss_dssp CEEEEEEEEEEETTEEEEEEEECC-----------CEEEEEEETT-----STHHHHHHHHHHHCCHHHHHHHHHHTTCTT
T ss_pred CeEEEEEEecCCCCeEEEEEeecCCccccccccCceEEEEEeccc-----chHHHHHHHHHHhcccchhhhhhhhccCCc
Confidence 689999999999999999999763 789999998754 45778999999999999988
Q ss_pred -----Eeeeeec-CCeeEEEEEccCCCCHHHHHhhC-CCCCCHHHHHHHHHHHHHHHHHHhhcCCCCCeEecCCCCCCee
Q 005040 488 -----ILGSCSN-LDFKALVLEFMPNGSLEKWLYSH-NYFLDILQRLNIMIDVGSALEYLHHCHSSAPIIHCDLKPTNIL 560 (717)
Q Consensus 488 -----~~~~~~~-~~~~~lv~e~~~~g~L~~~l~~~-~~~~~~~~~~~i~~~i~~~l~~LH~~~~~~~ivH~dlk~~Nil 560 (717)
+++++.. ....++||||+ +++|.+++... ...+++..+..++.|++.||.||| +.+|+||||||+||+
T Consensus 117 ~~i~~~~~~~~~~~~~~~lv~e~~-~~~L~~~l~~~~~~~l~~~~~~~i~~qi~~~L~~LH----~~~ivH~Dikp~NIl 191 (352)
T 2jii_A 117 LAIPTCMGFGVHQDKYRFLVLPSL-GRSLQSALDVSPKHVLSERSVLQVACRLLDALEFLH----ENEYVHGNVTAENIF 191 (352)
T ss_dssp CSCCCCCEEEEETTTEEEEEEECC-CEEHHHHHHHSGGGCCCHHHHHHHHHHHHHHHHHHH----HTTCBCSCCCGGGEE
T ss_pred cCccchhhccccCCcEEEEEecCC-CcCHHHHHHhCCcCCCCHHHHHHHHHHHHHHHHHHH----hCCccCCCCCHHHEE
Confidence 5666654 67889999999 99999999875 355999999999999999999999 679999999999999
Q ss_pred eCCCC--cEEEeeeccccccCCCCCc-----eeeeccccCccccCCCccCCCCcCcccchhhHHHHHHHHHhCCCCCCcc
Q 005040 561 LDENM--VAHVSDFGISKLLGEGEDS-----VIQTMTMATIGYMAPEYGSEGIVSTKCDVYSYGVLLMETFTEKKPTDEM 633 (717)
Q Consensus 561 l~~~~--~~kl~Dfgl~~~~~~~~~~-----~~~~~~~~t~~y~aPE~~~~~~~~~~~Dvws~G~il~el~tg~~p~~~~ 633 (717)
++.++ .+||+|||+++.+...... .......||+.|+|||++.+..++.++||||||+++|||++|+.||...
T Consensus 192 ~~~~~~~~~kl~Dfg~a~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Di~slG~il~el~~g~~pf~~~ 271 (352)
T 2jii_A 192 VDPEDQSQVTLAGYGFAFRYCPSGKHVAYVEGSRSPHEGDLEFISMDLHKGCGPSRRSDLQSLGYCMLKWLYGFLPWTNC 271 (352)
T ss_dssp EETTEEEEEEECCGGGCBCSSGGGCCCCCCTTSSCTTCSCTTTCCHHHHTTCCCCHHHHHHHHHHHHHHHHHSCCTTGGG
T ss_pred EcCCCCceEEEecCcceeeccCCCccccccccccccccCCccccCHHHHccCCCCchhhHHHHHHHHHHHHhCCCCcccC
Confidence 99998 9999999999876532211 1123347899999999999999999999999999999999999999765
Q ss_pred ccCcchHHHHHHhhCCCchhhhccccchhhhhhhhhhHHHHHHHHHHHhhccCCCCCCCCCHHHHHHHHHHhHHhhc
Q 005040 634 FTGEMSLRRWVKESLPHRLTEVVDANLVREEQAFSDKMDCLFSIMDLALDCCMDTPHKRIHMTDAAAKLRKIKAKFL 710 (717)
Q Consensus 634 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~cl~~~P~~Rpt~~ev~~~L~~~~~~~~ 710 (717)
................ ......+.. .....++.++.+++.+||+.||++|||++++++.|+++.+...
T Consensus 272 ~~~~~~~~~~~~~~~~-~~~~~~~~~--------~~~~~~~~~l~~li~~~l~~dp~~Rps~~~l~~~L~~~~~~~~ 339 (352)
T 2jii_A 272 LPNTEDIMKQKQKFVD-KPGPFVGPC--------GHWIRPSETLQKYLKVVMALTYEEKPPYAMLRNNLEALLQDLR 339 (352)
T ss_dssp TTCHHHHHHHHHHHHH-SCCCEECTT--------SCEECCCHHHHHHHHHHHTCCTTCCCCHHHHHHHHHHHHHHTT
T ss_pred CcCHHHHHHHHHhccC-Chhhhhhhc--------cccCCCcHHHHHHHHHHHhCChhhCCCHHHHHHHHHHHHHhcC
Confidence 4333222222221100 000000000 0011234668899999999999999999999999999977654
No 160
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=100.00 E-value=3.8e-39 Score=366.46 Aligned_cols=190 Identities=22% Similarity=0.201 Sum_probs=131.8
Q ss_pred ccccCCCCCCEEeccCCcCcccCCccccCCCCCCeEEecCccccCCCC-hhhhcccCCCeEEccCCcCcccCCccccCCC
Q 005040 159 HDLCHLERLNILNLSGNKLSGAIPQCLASLTSLRSLYLQSNKLSSSLP-SSLWSLEYILRINLSSNSLKGTLPSNIQKLN 237 (717)
Q Consensus 159 ~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~-~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~ 237 (717)
..+..+++|++|+|++|.+++ +|..|..+++|+.|++++|++.+..+ ..+..+++|++|++++|.+++..|..+..++
T Consensus 370 ~~~~~~~~L~~L~L~~n~l~~-~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~ 448 (606)
T 3vq2_A 370 YSDLGTNSLRHLDLSFNGAII-MSANFMGLEELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYTNTKIDFDGIFLGLT 448 (606)
T ss_dssp HHHHCCSCCCEEECCSCSEEE-ECCCCTTCTTCCEEECTTSEEESTTTTTTTTTCTTCCEEECTTSCCEECCTTTTTTCT
T ss_pred hhhccCCcccEeECCCCcccc-chhhccCCCCCCeeECCCCccCCccChhhhhccccCCEEECcCCCCCccchhhhcCCC
Confidence 334444445555555555442 33556666677777777777766555 5667777777777777777777777777777
Q ss_pred CCCeEEccCCCCCC-CCcccccCCcccccccccCccccCCCCccccccCccceEeccCCCCCCCCcccccccccccEEEc
Q 005040 238 VLIDLDLSRNQLSS-DIPSTIGTLKNLETLSLAGNQFQGPIPESVGNLISLESLDFSNNNLSGKIPKSLEALSHLKQFNV 316 (717)
Q Consensus 238 ~L~~L~l~~N~l~~-~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~~~~~~~~~~l~~L~~L~l 316 (717)
+|+.|++++|.+++ ..|..++.+++|++|++++|++++..|..+.++++|++|+|++|++++..|..+..+++|+.|+|
T Consensus 449 ~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l 528 (606)
T 3vq2_A 449 SLNTLKMAGNSFKDNTLSNVFANTTNLTFLDLSKCQLEQISWGVFDTLHRLQLLNMSHNNLLFLDSSHYNQLYSLSTLDC 528 (606)
T ss_dssp TCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCEEGGGTTTCTTCCEEEC
T ss_pred CCCEEECCCCcCCCcchHHhhccCCCCCEEECCCCcCCccChhhhcccccCCEEECCCCcCCCcCHHHccCCCcCCEEEC
Confidence 77777777777776 35667777788888888888887777777778888888888888887777777888888888888
Q ss_pred cCCccccccccccccc-ccccccccCCccccCCC
Q 005040 317 SHNRLEGEIPVKGSFK-DFSAQSYFGNYALCGPP 349 (717)
Q Consensus 317 ~~N~l~~~~p~~~~~~-~~~~~~~~~n~~~c~~~ 349 (717)
++|+++...+....+. .+..+.+.+|++.|+.+
T Consensus 529 ~~N~l~~~p~~~~~l~~~L~~l~l~~N~~~c~c~ 562 (606)
T 3vq2_A 529 SFNRIETSKGILQHFPKSLAFFNLTNNSVACICE 562 (606)
T ss_dssp TTSCCCCEESCGGGSCTTCCEEECCSCCCCCSST
T ss_pred CCCcCcccCHhHhhhcccCcEEEccCCCcccCCc
Confidence 8888774333333343 36666777888777654
No 161
>3dls_A PAS domain-containing serine/threonine-protein KI; PAS kinase, PASK, protein kinase, drug discovery, ATP-bindin kinase, nucleotide-binding; HET: ADP; 2.30A {Homo sapiens}
Probab=100.00 E-value=1.9e-40 Score=347.02 Aligned_cols=243 Identities=26% Similarity=0.346 Sum_probs=202.5
Q ss_pred HhccCCccccccccccEEEEEEEec-CCCeEEEEEechhhH--------HHHHHHHHHHHHHHhcCCCceeeEeeeeecC
Q 005040 425 ATDEFNECNLLGTGGFGSVYKGTLS-DGTNVAIKIFNLQLE--------RAFRSFDSECEILRNVRHRNLLKILGSCSNL 495 (717)
Q Consensus 425 ~~~~~~~~~~lg~G~~g~V~~~~~~-~~~~vavK~~~~~~~--------~~~~~~~~e~~~l~~l~hpniv~~~~~~~~~ 495 (717)
..++|++.+.||+|+||.||+|... +++.||||++..... ...+.+.+|++++++++||||+++++++.+.
T Consensus 22 ~~~~y~~~~~lG~G~~g~Vy~a~~~~~~~~vavK~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~~Iv~~~~~~~~~ 101 (335)
T 3dls_A 22 YSQKYSTMSPLGSGAFGFVWTAVDKEKNKEVVVKFIKKEKVLEDCWIEDPKLGKVTLEIAILSRVEHANIIKVLDIFENQ 101 (335)
T ss_dssp HHHHEEEEEECSSSSSCSEEEEEETTTTEEEEEEEEESTTSCTTSEEEETTTEEEEHHHHHHTTCCCTTBCCEEEEEECS
T ss_pred cccceEEEeEEEecCCEEEEEEEECCCCcEEEEEEEehhhcccccccchHHHHHHHHHHHHHHhCCCCCEeeEEEEEeeC
Confidence 4578999999999999999999865 789999999875431 1223567799999999999999999999999
Q ss_pred CeeEEEEEccCCC-CHHHHHhhCCCCCCHHHHHHHHHHHHHHHHHHhhcCCCCCeEecCCCCCCeeeCCCCcEEEeeecc
Q 005040 496 DFKALVLEFMPNG-SLEKWLYSHNYFLDILQRLNIMIDVGSALEYLHHCHSSAPIIHCDLKPTNILLDENMVAHVSDFGI 574 (717)
Q Consensus 496 ~~~~lv~e~~~~g-~L~~~l~~~~~~~~~~~~~~i~~~i~~~l~~LH~~~~~~~ivH~dlk~~Nill~~~~~~kl~Dfgl 574 (717)
+..++||||+.+| +|.+++.... .+++..+..++.|++.||.||| +.+|+||||||+||+++.++.+||+|||+
T Consensus 102 ~~~~lv~e~~~~g~~l~~~~~~~~-~l~~~~~~~i~~qi~~~L~~LH----~~~ivH~Dlkp~NIll~~~~~~kL~Dfg~ 176 (335)
T 3dls_A 102 GFFQLVMEKHGSGLDLFAFIDRHP-RLDEPLASYIFRQLVSAVGYLR----LKDIIHRDIKDENIVIAEDFTIKLIDFGS 176 (335)
T ss_dssp SEEEEEEECCTTSCBHHHHHHTCC-CCCHHHHHHHHHHHHHHHHHHH----HTTEECSCCSGGGEEECTTSCEEECCCTT
T ss_pred CEEEEEEEeCCCCccHHHHHHhcC-CCCHHHHHHHHHHHHHHHHHHH----hCCeEEeccCHHHEEEcCCCcEEEeeccc
Confidence 9999999998777 9999998754 3899999999999999999999 67899999999999999999999999999
Q ss_pred ccccCCCCCceeeeccccCccccCCCccCCCCc-CcccchhhHHHHHHHHHhCCCCCCccccCcchHHHHHHhhCCCchh
Q 005040 575 SKLLGEGEDSVIQTMTMATIGYMAPEYGSEGIV-STKCDVYSYGVLLMETFTEKKPTDEMFTGEMSLRRWVKESLPHRLT 653 (717)
Q Consensus 575 ~~~~~~~~~~~~~~~~~~t~~y~aPE~~~~~~~-~~~~Dvws~G~il~el~tg~~p~~~~~~~~~~~~~~~~~~~~~~~~ 653 (717)
+........ .....||+.|+|||++.+..+ +.++||||||+++|||++|+.||......
T Consensus 177 a~~~~~~~~---~~~~~gt~~y~aPE~~~~~~~~~~~~DiwslG~il~el~~g~~pf~~~~~~----------------- 236 (335)
T 3dls_A 177 AAYLERGKL---FYTFCGTIEYCAPEVLMGNPYRGPELEMWSLGVTLYTLVFEENPFCELEET----------------- 236 (335)
T ss_dssp CEECCTTCC---BCEECSCGGGCCHHHHTTCCBCSHHHHHHHHHHHHHHHHHSSCSCSSGGGG-----------------
T ss_pred ceECCCCCc---eeccCCCccccChhhhcCCCCCCCcccchhHHHHHHHHHhCCCchhhHHHH-----------------
Confidence 987754332 233568999999999888776 88999999999999999999999652110
Q ss_pred hhccccchhhhhhhhhhHHHHHHHHHHHhhccCCCCCCCCCHHHHHHH
Q 005040 654 EVVDANLVREEQAFSDKMDCLFSIMDLALDCCMDTPHKRIHMTDAAAK 701 (717)
Q Consensus 654 ~~~~~~~~~~~~~~~~~~~~~~~l~~li~~cl~~~P~~Rpt~~ev~~~ 701 (717)
..... ..+..++.++.+++.+||+.||++|||+.|+++.
T Consensus 237 --~~~~~-------~~~~~~~~~l~~li~~~L~~dP~~Rps~~ell~h 275 (335)
T 3dls_A 237 --VEAAI-------HPPYLVSKELMSLVSGLLQPVPERRTTLEKLVTD 275 (335)
T ss_dssp --TTTCC-------CCSSCCCHHHHHHHHHHTCSSGGGSCCHHHHHHC
T ss_pred --Hhhcc-------CCCcccCHHHHHHHHHHccCChhhCcCHHHHhcC
Confidence 00000 0011234568899999999999999999999874
No 162
>1xbb_A Tyrosine-protein kinase SYK; gleevec, STI-571, imatinib, spleen typrosine kinase, active conformation, structural genomics, structural genomix; HET: STI; 1.57A {Homo sapiens} SCOP: d.144.1.7 PDB: 1xba_A* 1xbc_A* 3fqe_A* 3fqh_A* 3fqs_A* 3emg_A* 3srv_A* 4dfl_A* 4dfn_A* 3vf8_A* 3vf9_A*
Probab=100.00 E-value=1.5e-39 Score=333.97 Aligned_cols=260 Identities=25% Similarity=0.370 Sum_probs=207.7
Q ss_pred hccCCccc-cccccccEEEEEEEec---CCCeEEEEEechhh--HHHHHHHHHHHHHHHhcCCCceeeEeeeeecCCeeE
Q 005040 426 TDEFNECN-LLGTGGFGSVYKGTLS---DGTNVAIKIFNLQL--ERAFRSFDSECEILRNVRHRNLLKILGSCSNLDFKA 499 (717)
Q Consensus 426 ~~~~~~~~-~lg~G~~g~V~~~~~~---~~~~vavK~~~~~~--~~~~~~~~~e~~~l~~l~hpniv~~~~~~~~~~~~~ 499 (717)
.++|++.+ .||+|+||.||+|.+. +++.||||++.... ....+.+.+|+++++.++||||+++++++ ..+..+
T Consensus 15 ~~~y~~~~~~lg~G~~g~Vy~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~-~~~~~~ 93 (291)
T 1xbb_A 15 RKLLTLEDKELGSGNFGTVKKGYYQMKKVVKTVAVKILKNEANDPALKDELLAEANVMQQLDNPYIVRMIGIC-EAESWM 93 (291)
T ss_dssp GGGEEEEEEEEEECSSEEEEEEEEECSSSEEEEEEEEEC-----CHHHHHHHHHHHHHHTCCCTTBCCEEEEE-ESSSEE
T ss_pred chhhhhccCccccccCeeeEeeeecCCCceeeEEEEeecccccCHHHHHHHHHHHHHHHhCCCCCEEEEEEEE-CCCCcE
Confidence 36788877 9999999999999642 57889999997553 23356789999999999999999999999 556789
Q ss_pred EEEEccCCCCHHHHHhhCCCCCCHHHHHHHHHHHHHHHHHHhhcCCCCCeEecCCCCCCeeeCCCCcEEEeeeccccccC
Q 005040 500 LVLEFMPNGSLEKWLYSHNYFLDILQRLNIMIDVGSALEYLHHCHSSAPIIHCDLKPTNILLDENMVAHVSDFGISKLLG 579 (717)
Q Consensus 500 lv~e~~~~g~L~~~l~~~~~~~~~~~~~~i~~~i~~~l~~LH~~~~~~~ivH~dlk~~Nill~~~~~~kl~Dfgl~~~~~ 579 (717)
+||||+++++|.+++.... .+++..+..++.|++.||+||| +.+|+||||||+||+++.++.+||+|||++....
T Consensus 94 lv~e~~~~~~L~~~l~~~~-~~~~~~~~~i~~qi~~~l~~LH----~~~i~H~dikp~Nil~~~~~~~kl~Dfg~~~~~~ 168 (291)
T 1xbb_A 94 LVMEMAELGPLNKYLQQNR-HVKDKNIIELVHQVSMGMKYLE----ESNFVHRDLAARNVLLVTQHYAKISDFGLSKALR 168 (291)
T ss_dssp EEEECCTTEEHHHHHHHCT-TCCHHHHHHHHHHHHHHHHHHH----HTTEECSCCSGGGEEEEETTEEEECCCTTCEECC
T ss_pred EEEEeCCCCCHHHHHHhCc-CCCHHHHHHHHHHHHHHHHHHH----hCCeEcCCCCcceEEEeCCCcEEEccCCcceeec
Confidence 9999999999999998754 4899999999999999999999 6789999999999999999999999999998775
Q ss_pred CCCCce-eeeccccCccccCCCccCCCCcCcccchhhHHHHHHHHHh-CCCCCCccccCcchHHHHHHhhCCCchhhhcc
Q 005040 580 EGEDSV-IQTMTMATIGYMAPEYGSEGIVSTKCDVYSYGVLLMETFT-EKKPTDEMFTGEMSLRRWVKESLPHRLTEVVD 657 (717)
Q Consensus 580 ~~~~~~-~~~~~~~t~~y~aPE~~~~~~~~~~~Dvws~G~il~el~t-g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 657 (717)
...... ......+|+.|+|||.+.+..++.++||||||+++|||++ |+.||..... ......+.......
T Consensus 169 ~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~~g~~p~~~~~~--~~~~~~~~~~~~~~------ 240 (291)
T 1xbb_A 169 ADENYYKAQTHGKWPVKWYAPECINYYKFSSKSDVWSFGVLMWEAFSYGQKPYRGMKG--SEVTAMLEKGERMG------ 240 (291)
T ss_dssp TTCSEEEC----CCCGGGCCHHHHHHCEEEHHHHHHHHHHHHHHHHTTTCCSSTTCCH--HHHHHHHHTTCCCC------
T ss_pred cCCCcccccccCCCCceeeChHHhccCCCChhhhHHHHHHHHHHHHhcCCCCCCCCCH--HHHHHHHHcCCCCC------
Confidence 443322 1223346788999999988889999999999999999999 9999976322 11222221111000
Q ss_pred ccchhhhhhhhhhHHHHHHHHHHHhhccCCCCCCCCCHHHHHHHHHHhHHhhc
Q 005040 658 ANLVREEQAFSDKMDCLFSIMDLALDCCMDTPHKRIHMTDAAAKLRKIKAKFL 710 (717)
Q Consensus 658 ~~~~~~~~~~~~~~~~~~~l~~li~~cl~~~P~~Rpt~~ev~~~L~~~~~~~~ 710 (717)
.+..++.++.+++.+||+.||++||++.++++.|+++.....
T Consensus 241 -----------~~~~~~~~l~~li~~~l~~dp~~Rps~~~l~~~L~~~~~~~~ 282 (291)
T 1xbb_A 241 -----------CPAGCPREMYDLMNLCWTYDVENRPGFAAVELRLRNYYYDVV 282 (291)
T ss_dssp -----------CCTTCCHHHHHHHHHHTCSSTTTSCCHHHHHHHHHHHHHHHH
T ss_pred -----------CCCCCCHHHHHHHHHHcCCChhhCcCHHHHHHHHHHHHHHHh
Confidence 011345678899999999999999999999999999866544
No 163
>1nxk_A MAP kinase-activated protein kinase 2; MK2, phosphorylation, staurosporine, transfe; HET: STU; 2.70A {Homo sapiens} SCOP: d.144.1.7 PDB: 1kwp_A* 1ny3_A* 2onl_C
Probab=100.00 E-value=1.9e-39 Score=347.64 Aligned_cols=249 Identities=21% Similarity=0.287 Sum_probs=191.9
Q ss_pred ccCCcc-ccccccccEEEEEEEec-CCCeEEEEEechhhHHHHHHHHHHHHHHHh-cCCCceeeEeeeeec----CCeeE
Q 005040 427 DEFNEC-NLLGTGGFGSVYKGTLS-DGTNVAIKIFNLQLERAFRSFDSECEILRN-VRHRNLLKILGSCSN----LDFKA 499 (717)
Q Consensus 427 ~~~~~~-~~lg~G~~g~V~~~~~~-~~~~vavK~~~~~~~~~~~~~~~e~~~l~~-l~hpniv~~~~~~~~----~~~~~ 499 (717)
++|.+. +.||+|+||.||+|... +++.||||++... ..+.+|++++.+ .+||||+++++++.. ....|
T Consensus 61 ~~y~~~~~~LG~G~~g~V~~~~~~~~~~~vAiK~~~~~-----~~~~~E~~~~~~~~~hp~iv~l~~~~~~~~~~~~~~~ 135 (400)
T 1nxk_A 61 DDYKVTSQVLGLGINGKVLQIFNKRTQEKFALKMLQDC-----PKARREVELHWRASQCPHIVRIVDVYENLYAGRKCLL 135 (400)
T ss_dssp GTEEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEECS-----HHHHHHHHHHHHHTTSTTBCCEEEEEEEEETTEEEEE
T ss_pred ccceeccceeeeccCeEEEEEEECCCCCEEEEEEeCcc-----hhHHHHHHHHHHhcCCCCcceEeEEEeecccCCcEEE
Confidence 567666 68999999999999976 7899999998643 345678888754 489999999998865 56789
Q ss_pred EEEEccCCCCHHHHHhhCC-CCCCHHHHHHHHHHHHHHHHHHhhcCCCCCeEecCCCCCCeeeCC---CCcEEEeeeccc
Q 005040 500 LVLEFMPNGSLEKWLYSHN-YFLDILQRLNIMIDVGSALEYLHHCHSSAPIIHCDLKPTNILLDE---NMVAHVSDFGIS 575 (717)
Q Consensus 500 lv~e~~~~g~L~~~l~~~~-~~~~~~~~~~i~~~i~~~l~~LH~~~~~~~ivH~dlk~~Nill~~---~~~~kl~Dfgl~ 575 (717)
+||||+++|+|.+++.... ..+++..+..++.|++.||.||| +.+|+||||||+|||++. ++.+||+|||++
T Consensus 136 lv~E~~~gg~L~~~l~~~~~~~l~~~~~~~i~~qi~~aL~~LH----~~~ivHrDlkp~Nill~~~~~~~~~kl~DFG~a 211 (400)
T 1nxk_A 136 IVMECLDGGELFSRIQDRGDQAFTEREASEIMKSIGEAIQYLH----SINIAHRDVKPENLLYTSKRPNAILKLTDFGFA 211 (400)
T ss_dssp EEEECCCSEEHHHHHHCC---CCBHHHHHHHHHHHHHHHHHHH----HTTEECCCCCGGGEEESSSSTTCCEEECCCTTC
T ss_pred EEEEeCCCCcHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHH----HCCccccCcCcceEEEecCCCCccEEEEecccc
Confidence 9999999999999998653 45899999999999999999999 678999999999999997 789999999999
Q ss_pred cccCCCCCceeeeccccCccccCCCccCCCCcCcccchhhHHHHHHHHHhCCCCCCccccCcc--hHHHHHHhhCCCchh
Q 005040 576 KLLGEGEDSVIQTMTMATIGYMAPEYGSEGIVSTKCDVYSYGVLLMETFTEKKPTDEMFTGEM--SLRRWVKESLPHRLT 653 (717)
Q Consensus 576 ~~~~~~~~~~~~~~~~~t~~y~aPE~~~~~~~~~~~Dvws~G~il~el~tg~~p~~~~~~~~~--~~~~~~~~~~~~~~~ 653 (717)
+...... .....+||+.|+|||++.+..++.++|||||||++|||++|+.||........ .....+......
T Consensus 212 ~~~~~~~---~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~ell~g~~pf~~~~~~~~~~~~~~~i~~~~~~--- 285 (400)
T 1nxk_A 212 KETTSHN---SLTTPCYTPYYVAPEVLGPEKYDKSCDMWSLGVIMYILLCGYPPFYSNHGLAISPGMKTRIRMGQYE--- 285 (400)
T ss_dssp EECC--------------CTTCCGGGSCCCCSSSHHHHHHHHHHHHHHHHSSCSCCCCTTCSSCCSHHHHHHHTCCC---
T ss_pred cccCCCC---ccccCCCCCCccCHhhcCCCCCCCcccHHHHHHHHHHHHhCCCCCCCCccccccHHHHHHHHcCccc---
Confidence 8754322 22345789999999999999999999999999999999999999976432211 111111110000
Q ss_pred hhccccchhhhhhhhhhHHHHHHHHHHHhhccCCCCCCCCCHHHHHHH
Q 005040 654 EVVDANLVREEQAFSDKMDCLFSIMDLALDCCMDTPHKRIHMTDAAAK 701 (717)
Q Consensus 654 ~~~~~~~~~~~~~~~~~~~~~~~l~~li~~cl~~~P~~Rpt~~ev~~~ 701 (717)
+. ......++.++.++|.+||+.||++|||+.|+++.
T Consensus 286 ------~~-----~~~~~~~s~~~~~li~~~L~~dP~~Rpt~~eil~h 322 (400)
T 1nxk_A 286 ------FP-----NPEWSEVSEEVKMLIRNLLKTEPTQRMTITEFMNH 322 (400)
T ss_dssp ------CC-----TTTTTTSCHHHHHHHHTTSCSSGGGSCCHHHHHHS
T ss_pred ------CC-----CcccccCCHHHHHHHHHHCCCChhHCcCHHHHhcC
Confidence 00 01112345678899999999999999999999874
No 164
>3g33_A Cell division protein kinase 4; Ser/Thr protein kinase, cell cycle, phosphorylation, ATP-BIN cell division, disease mutation, kinase; 3.00A {Homo sapiens}
Probab=100.00 E-value=6.8e-40 Score=339.53 Aligned_cols=267 Identities=25% Similarity=0.302 Sum_probs=199.2
Q ss_pred HhccCCccccccccccEEEEEEEec-CCCeEEEEEechhh-----HHHHHHHHHHHHHHHhc---CCCceeeEeeeeecC
Q 005040 425 ATDEFNECNLLGTGGFGSVYKGTLS-DGTNVAIKIFNLQL-----ERAFRSFDSECEILRNV---RHRNLLKILGSCSNL 495 (717)
Q Consensus 425 ~~~~~~~~~~lg~G~~g~V~~~~~~-~~~~vavK~~~~~~-----~~~~~~~~~e~~~l~~l---~hpniv~~~~~~~~~ 495 (717)
..++|++.+.||+|+||+||+|... +++.||+|++.... ......+.+|+++++.+ +||||+++++++.+.
T Consensus 7 ~~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~~~e~~~l~~l~~~~h~niv~~~~~~~~~ 86 (308)
T 3g33_A 7 ATSRYEPVAEIGVGAYGTVYKARDPHSGHFVALKSVRVPNGGGGGGGLPISTVREVALLRRLEAFEHPNVVRLMDVCATS 86 (308)
T ss_dssp ---CCEEEEEECCSSSCCEEEEECTTTCCEEEEEEEEEECCCTTSSCCCHHHHHHHHHHHHHHHHCCTTBCCEEEEEEEC
T ss_pred cccceEEEEEEecCCCeEEEEEEECCCCcEEEEEEEecccccccccccchhHHHHHHHHHHHhhcCCCCeEEeeeeeecc
Confidence 4579999999999999999999964 78999999986432 11123455677777766 499999999998765
Q ss_pred C-----eeEEEEEccCCCCHHHHHhhCC-CCCCHHHHHHHHHHHHHHHHHHhhcCCCCCeEecCCCCCCeeeCCCCcEEE
Q 005040 496 D-----FKALVLEFMPNGSLEKWLYSHN-YFLDILQRLNIMIDVGSALEYLHHCHSSAPIIHCDLKPTNILLDENMVAHV 569 (717)
Q Consensus 496 ~-----~~~lv~e~~~~g~L~~~l~~~~-~~~~~~~~~~i~~~i~~~l~~LH~~~~~~~ivH~dlk~~Nill~~~~~~kl 569 (717)
. ..++||||+. |+|.+++.... ..+++..+..++.|++.||+||| +.+|+||||||+||+++.++.+||
T Consensus 87 ~~~~~~~~~lv~e~~~-~~L~~~~~~~~~~~~~~~~~~~i~~qi~~al~~lH----~~~ivH~Dlkp~Nil~~~~~~~kl 161 (308)
T 3g33_A 87 RTDREIKVTLVFEHVD-QDLRTYLDKAPPPGLPAETIKDLMRQFLRGLDFLH----ANCIVHRDLKPENILVTSGGTVKL 161 (308)
T ss_dssp CSSSEEEEEEEEECCC-CBHHHHHHTCCTTCSCHHHHHHHHHHHHHHHHHHH----HTTCCCSCCCTTTEEECTTSCEEE
T ss_pred CCCCceeEEEEehhhh-cCHHHHHhhccCCCCCHHHHHHHHHHHHHHHHHHH----HCCcccCCCCHHHEEEcCCCCEEE
Confidence 4 5799999997 59999998654 34899999999999999999999 678999999999999999999999
Q ss_pred eeeccccccCCCCCceeeeccccCccccCCCccCCCCcCcccchhhHHHHHHHHHhCCCCCCccccCcchHHHHHHhhC-
Q 005040 570 SDFGISKLLGEGEDSVIQTMTMATIGYMAPEYGSEGIVSTKCDVYSYGVLLMETFTEKKPTDEMFTGEMSLRRWVKESL- 648 (717)
Q Consensus 570 ~Dfgl~~~~~~~~~~~~~~~~~~t~~y~aPE~~~~~~~~~~~Dvws~G~il~el~tg~~p~~~~~~~~~~~~~~~~~~~- 648 (717)
+|||+++....... .....||+.|+|||++.+..++.++||||+||++|||++|+.||...... ...........
T Consensus 162 ~Dfg~a~~~~~~~~---~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~~l~~g~~pf~~~~~~-~~~~~i~~~~~~ 237 (308)
T 3g33_A 162 ADFGLARIYSYQMA---LTPVVVTLWYRAPEVLLQSTYATPVDMWSVGCIFAEMFRRKPLFCGNSEA-DQLGKIFDLIGL 237 (308)
T ss_dssp CSCSCTTTSTTCCC---SGGGGCCCSSCCHHHHHTSCCCSTHHHHHHHHHHHHTTTSSCSCCCSSHH-HHHHHHHHHHCC
T ss_pred eeCccccccCCCcc---cCCccccccccCchHHcCCCCCchHHHHHHHHHHHHHHhCCCCCCCCCHH-HHHHHHHHHhCC
Confidence 99999987643222 24457899999999998899999999999999999999999999763222 12222222111
Q ss_pred CC--chhhhc---cccchhh--hhhhhhhHHHHHHHHHHHhhccCCCCCCCCCHHHHHH
Q 005040 649 PH--RLTEVV---DANLVRE--EQAFSDKMDCLFSIMDLALDCCMDTPHKRIHMTDAAA 700 (717)
Q Consensus 649 ~~--~~~~~~---~~~~~~~--~~~~~~~~~~~~~l~~li~~cl~~~P~~Rpt~~ev~~ 700 (717)
+. .+.... ...+... ........+++.++.+++.+||+.||++|||+.|+++
T Consensus 238 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~R~t~~e~l~ 296 (308)
T 3g33_A 238 PPEDDWPRDVSLPRGAFPPRGPRPVQSVVPEMEESGAQLLLEMLTFNPHKRISAFRALQ 296 (308)
T ss_dssp CCTTTSCSSCSSCGGGSCCCCCCCHHHHSCSCCHHHHHHHHHHTCSSTTTSCCHHHHHT
T ss_pred CChhhccchhhccccccCCCCCCcHHHhCccccHHHHHHHHHHhcCCCccCCCHHHHhc
Confidence 10 010000 0000000 0000111234567889999999999999999999986
No 165
>3c4z_A Rhodopsin kinase; Ser/Thr kinase, RGS homology domain, G protein coupled recep kinase, GRK, GRK1, P-loop, autophosphoryl ADP, ATP-binding; HET: ADP; 1.84A {Bos taurus} PDB: 3c4x_A* 3c4y_A 3c4w_A* 3c50_A* 3c51_A* 3qc9_A* 2i94_B
Probab=100.00 E-value=1.6e-39 Score=357.43 Aligned_cols=248 Identities=25% Similarity=0.321 Sum_probs=202.9
Q ss_pred hccCCccccccccccEEEEEEEec-CCCeEEEEEechhh---HHHHHHHHHHHHHHHhcCCCceeeEeeeeecCCeeEEE
Q 005040 426 TDEFNECNLLGTGGFGSVYKGTLS-DGTNVAIKIFNLQL---ERAFRSFDSECEILRNVRHRNLLKILGSCSNLDFKALV 501 (717)
Q Consensus 426 ~~~~~~~~~lg~G~~g~V~~~~~~-~~~~vavK~~~~~~---~~~~~~~~~e~~~l~~l~hpniv~~~~~~~~~~~~~lv 501 (717)
.++|+..+.||+|+||.||+|+.+ +|+.||+|++.... ....+.+.+|++++++++||||+++++++.+....|+|
T Consensus 184 ~~~f~~~~~LG~G~fG~Vy~a~~~~tg~~vAiK~l~k~~~~~~~~~~~~~~E~~iL~~l~hp~Iv~l~~~~~~~~~l~lV 263 (543)
T 3c4z_A 184 EDWFLDFRVLGRGGFGEVFACQMKATGKLYACKKLNKKRLKKRKGYQGAMVEKKILAKVHSRFIVSLAYAFETKTDLCLV 263 (543)
T ss_dssp GGGEEEEEEEEECSSSEEEEEEETTTCCEEEEEEEEHHHHHHTTCHHHHHHHHHHHHHCCCTTBCCEEEEEECSSEEEEE
T ss_pred hhheEEEEEEeeCCCeEEEEEEECCCCcEEEEEEEEhHHhhhhHHHHHHHHHHHHHHhcCCCCEeeEEEEEeeCCEEEEE
Confidence 368899999999999999999975 79999999997654 22346788999999999999999999999999999999
Q ss_pred EEccCCCCHHHHHhhC---CCCCCHHHHHHHHHHHHHHHHHHhhcCCCCCeEecCCCCCCeeeCCCCcEEEeeecccccc
Q 005040 502 LEFMPNGSLEKWLYSH---NYFLDILQRLNIMIDVGSALEYLHHCHSSAPIIHCDLKPTNILLDENMVAHVSDFGISKLL 578 (717)
Q Consensus 502 ~e~~~~g~L~~~l~~~---~~~~~~~~~~~i~~~i~~~l~~LH~~~~~~~ivH~dlk~~Nill~~~~~~kl~Dfgl~~~~ 578 (717)
|||++||+|.+++... ...+++..+..++.||+.||.||| +.+|+||||||+||+++.++++||+|||+++.+
T Consensus 264 mE~~~gg~L~~~l~~~~~~~~~l~e~~~~~~~~qi~~aL~~LH----~~gIvHrDLKP~NILl~~~g~vkL~DFGla~~~ 339 (543)
T 3c4z_A 264 MTIMNGGDIRYHIYNVDEDNPGFQEPRAIFYTAQIVSGLEHLH----QRNIIYRDLKPENVLLDDDGNVRISDLGLAVEL 339 (543)
T ss_dssp ECCCTTCBHHHHHHTSSTTSCSCCHHHHHHHHHHHHHHHHHHH----HTTEECCCCCGGGEEECTTSCEEECCCTTCEEC
T ss_pred EEeccCCCHHHHHHHhhcccccccHHHHHHHHHHHHHHHHHHH----HcCCcccCCChHHEEEeCCCCEEEeecceeeec
Confidence 9999999999999854 345899999999999999999999 678999999999999999999999999999876
Q ss_pred CCCCCceeeeccccCccccCCCccCCCCcCcccchhhHHHHHHHHHhCCCCCCccccCcchHHHHHHhhCCCchhhhccc
Q 005040 579 GEGEDSVIQTMTMATIGYMAPEYGSEGIVSTKCDVYSYGVLLMETFTEKKPTDEMFTGEMSLRRWVKESLPHRLTEVVDA 658 (717)
Q Consensus 579 ~~~~~~~~~~~~~~t~~y~aPE~~~~~~~~~~~Dvws~G~il~el~tg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 658 (717)
...... ....+||+.|+|||++.+..++.++||||+||++|||++|+.||....... .......... ..
T Consensus 340 ~~~~~~--~~~~~GT~~Y~APE~l~~~~~~~~~DiwSlGvilyelltG~~PF~~~~~~~-~~~~~~~~i~--------~~ 408 (543)
T 3c4z_A 340 KAGQTK--TKGYAGTPGFMAPELLLGEEYDFSVDYFALGVTLYEMIAARGPFRARGEKV-ENKELKQRVL--------EQ 408 (543)
T ss_dssp CTTCCC--BCCCCSCTTTSCHHHHTTCCBCTHHHHHHHHHHHHHHHHSSCSSCCTTCCC-CHHHHHHHHH--------HC
T ss_pred cCCCcc--cccccCCccccChhhhcCCCCChHHhcCcchHHHHHHHhCCCCCCCCccch-hHHHHHHHHh--------hc
Confidence 543221 234579999999999999999999999999999999999999997642211 1111111100 00
Q ss_pred cchhhhhhhhhhHHHHHHHHHHHhhccCCCCCCCCCH
Q 005040 659 NLVREEQAFSDKMDCLFSIMDLALDCCMDTPHKRIHM 695 (717)
Q Consensus 659 ~~~~~~~~~~~~~~~~~~l~~li~~cl~~~P~~Rpt~ 695 (717)
.. ..+..++.++.+++.+||+.||++||++
T Consensus 409 ~~-------~~p~~~s~~~~~li~~lL~~dP~~R~~~ 438 (543)
T 3c4z_A 409 AV-------TYPDKFSPASKDFCEALLQKDPEKRLGF 438 (543)
T ss_dssp CC-------CCCTTSCHHHHHHHHHHSCSSGGGSCCC
T ss_pred cc-------CCCcccCHHHHHHHHHhccCCHhHCCCC
Confidence 00 0011345668899999999999999975
No 166
>1fvr_A Tyrosine-protein kinase TIE-2; tyrosine kinase, transferase; 2.20A {Homo sapiens} SCOP: d.144.1.7 PDB: 2oo8_X* 2osc_A* 2p4i_A* 3l8p_A* 2wqb_A*
Probab=100.00 E-value=4.5e-40 Score=343.85 Aligned_cols=259 Identities=29% Similarity=0.475 Sum_probs=206.6
Q ss_pred ccCCccccccccccEEEEEEEec-CCCe--EEEEEechhh-HHHHHHHHHHHHHHHhc-CCCceeeEeeeeecCCeeEEE
Q 005040 427 DEFNECNLLGTGGFGSVYKGTLS-DGTN--VAIKIFNLQL-ERAFRSFDSECEILRNV-RHRNLLKILGSCSNLDFKALV 501 (717)
Q Consensus 427 ~~~~~~~~lg~G~~g~V~~~~~~-~~~~--vavK~~~~~~-~~~~~~~~~e~~~l~~l-~hpniv~~~~~~~~~~~~~lv 501 (717)
++|++.+.||+|+||.||+|+.. ++.. ||+|++.... ....+.+.+|+++++++ +||||+++++++.+.+..++|
T Consensus 25 ~~y~~~~~lg~G~~g~Vy~~~~~~~~~~~~v~iK~~~~~~~~~~~~~~~~E~~~l~~l~~hp~iv~~~~~~~~~~~~~lv 104 (327)
T 1fvr_A 25 NDIKFQDVIGEGNFGQVLKARIKKDGLRMDAAIKRMKEYASKDDHRDFAGELEVLCKLGHHPNIINLLGACEHRGYLYLA 104 (327)
T ss_dssp GGCEEEEEEECGGGCEEEEEEEEETTEEEEEEEEEEECC------CHHHHHHHHHTTCCCCTTBCCEEEEEEETTEEEEE
T ss_pred HHccceeeeecCCCceEEEEEEccCCcccceeeeeeccccchHHHHHHHHHHHHHHhccCCCchhhhceeeeeCCceEEE
Confidence 68999999999999999999875 5664 4999886432 33456788999999999 899999999999999999999
Q ss_pred EEccCCCCHHHHHhhCC---------------CCCCHHHHHHHHHHHHHHHHHHhhcCCCCCeEecCCCCCCeeeCCCCc
Q 005040 502 LEFMPNGSLEKWLYSHN---------------YFLDILQRLNIMIDVGSALEYLHHCHSSAPIIHCDLKPTNILLDENMV 566 (717)
Q Consensus 502 ~e~~~~g~L~~~l~~~~---------------~~~~~~~~~~i~~~i~~~l~~LH~~~~~~~ivH~dlk~~Nill~~~~~ 566 (717)
|||+++|+|.+++.... ..+++..++.++.|+++||.||| +.+|+||||||+||+++.++.
T Consensus 105 ~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~qi~~aL~~LH----~~~ivH~dlkp~NIl~~~~~~ 180 (327)
T 1fvr_A 105 IEYAPHGNLLDFLRKSRVLETDPAFAIANSTASTLSSQQLLHFAADVARGMDYLS----QKQFIHRDLAARNILVGENYV 180 (327)
T ss_dssp ECCCTTCBHHHHHHTTCHHHHCHHHHHHTTBSCSSCHHHHHHHHHHHHHHHHHHH----HTTEECSCCSGGGEEECGGGC
T ss_pred EecCCCCCHHHHHHhcccccccccccccccccccCCHHHHHHHHHHHHHHHHHHH----hCCccCCCCccceEEEcCCCe
Confidence 99999999999998653 46899999999999999999999 678999999999999999999
Q ss_pred EEEeeeccccccCCCCCceeeeccccCccccCCCccCCCCcCcccchhhHHHHHHHHHh-CCCCCCccccCcchHHHHHH
Q 005040 567 AHVSDFGISKLLGEGEDSVIQTMTMATIGYMAPEYGSEGIVSTKCDVYSYGVLLMETFT-EKKPTDEMFTGEMSLRRWVK 645 (717)
Q Consensus 567 ~kl~Dfgl~~~~~~~~~~~~~~~~~~t~~y~aPE~~~~~~~~~~~Dvws~G~il~el~t-g~~p~~~~~~~~~~~~~~~~ 645 (717)
+||+|||+++.... ........+++.|+|||++.+..++.++||||||+++|||++ |+.||...... .....+.
T Consensus 181 ~kL~Dfg~~~~~~~---~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~ellt~g~~pf~~~~~~--~~~~~~~ 255 (327)
T 1fvr_A 181 AKIADFGLSRGQEV---YVKKTMGRLPVRWMAIESLNYSVYTTNSDVWSYGVLLWEIVSLGGTPYCGMTCA--ELYEKLP 255 (327)
T ss_dssp EEECCTTCEESSCE---ECCC----CCTTTCCHHHHHHCEECHHHHHHHHHHHHHHHHTTSCCTTTTCCHH--HHHHHGG
T ss_pred EEEcccCcCccccc---cccccCCCCCccccChhhhccccCCchhcchHHHHHHHHHHcCCCCCCCCCcHH--HHHHHhh
Confidence 99999999874321 111233456889999999988889999999999999999998 99999753211 1111111
Q ss_pred hhCCCchhhhccccchhhhhhhhhhHHHHHHHHHHHhhccCCCCCCCCCHHHHHHHHHHhHHhhcc
Q 005040 646 ESLPHRLTEVVDANLVREEQAFSDKMDCLFSIMDLALDCCMDTPHKRIHMTDAAAKLRKIKAKFLD 711 (717)
Q Consensus 646 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~cl~~~P~~Rpt~~ev~~~L~~~~~~~~~ 711 (717)
.... ......++.++.+++.+||+.||++|||+.|+++.|+++......
T Consensus 256 ~~~~-----------------~~~~~~~~~~l~~li~~~l~~dp~~Rps~~ell~~L~~~~~~~~~ 304 (327)
T 1fvr_A 256 QGYR-----------------LEKPLNCDDEVYDLMRQCWREKPYERPSFAQILVSLNRMLEERKT 304 (327)
T ss_dssp GTCC-----------------CCCCTTBCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHHHSSSC
T ss_pred cCCC-----------------CCCCCCCCHHHHHHHHHHccCChhhCcCHHHHHHHHHHHHHhhcC
Confidence 0000 001123456688999999999999999999999999998775543
No 167
>1t4h_A Serine/threonine-protein kinase WNK1; protein serine/threonine kinase, transferase; 1.80A {Rattus norvegicus} PDB: 3fpq_A
Probab=100.00 E-value=4.3e-39 Score=330.46 Aligned_cols=247 Identities=23% Similarity=0.330 Sum_probs=197.6
Q ss_pred ccCCccccccccccEEEEEEEec-CCCeEEEEEechhh--HHHHHHHHHHHHHHHhcCCCceeeEeeeeec----CCeeE
Q 005040 427 DEFNECNLLGTGGFGSVYKGTLS-DGTNVAIKIFNLQL--ERAFRSFDSECEILRNVRHRNLLKILGSCSN----LDFKA 499 (717)
Q Consensus 427 ~~~~~~~~lg~G~~g~V~~~~~~-~~~~vavK~~~~~~--~~~~~~~~~e~~~l~~l~hpniv~~~~~~~~----~~~~~ 499 (717)
..|.+.+.||+|+||.||+|... ++..||+|++.... ....+.+.+|+.++++++||||+++++++.. ....+
T Consensus 26 ~~~~~~~~lg~G~~g~Vy~~~~~~~~~~va~k~~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~~~~~~~ 105 (290)
T 1t4h_A 26 RFLKFDIEIGRGSFKTVYKGLDTETTVEVAWCELQDRKLTKSERQRFKEEAEMLKGLQHPNIVRFYDSWESTVKGKKCIV 105 (290)
T ss_dssp CEEEEEEEEEECSSEEEEEEEETTTCCEEEEEEEEGGGSCHHHHHHHHHHHHHHTTCCCTTBCCEEEEEEEESSSCEEEE
T ss_pred eeEEeeeeccCCCCeEEEEeEecCCceEEEEEEecchhhCHHHHHHHHHHHHHHHhCCCCCeeeeeeeeccccCCCceEE
Confidence 35777889999999999999875 78899999987543 4455778999999999999999999998754 45689
Q ss_pred EEEEccCCCCHHHHHhhCCCCCCHHHHHHHHHHHHHHHHHHhhcCCCCC--eEecCCCCCCeeeC-CCCcEEEeeecccc
Q 005040 500 LVLEFMPNGSLEKWLYSHNYFLDILQRLNIMIDVGSALEYLHHCHSSAP--IIHCDLKPTNILLD-ENMVAHVSDFGISK 576 (717)
Q Consensus 500 lv~e~~~~g~L~~~l~~~~~~~~~~~~~~i~~~i~~~l~~LH~~~~~~~--ivH~dlk~~Nill~-~~~~~kl~Dfgl~~ 576 (717)
+||||+++|+|.+++.... .+++..+..++.|++.||.||| +.+ |+||||||+||+++ .++.+||+|||++.
T Consensus 106 lv~e~~~~~~L~~~l~~~~-~~~~~~~~~~~~qi~~~l~~lH----~~~~~i~H~dikp~Nil~~~~~~~~kl~Dfg~~~ 180 (290)
T 1t4h_A 106 LVTELMTSGTLKTYLKRFK-VMKIKVLRSWCRQILKGLQFLH----TRTPPIIHRDLKCDNIFITGPTGSVKIGDLGLAT 180 (290)
T ss_dssp EEEECCCSCBHHHHHHHHS-SCCHHHHHHHHHHHHHHHHHHH----TSSSCCCCSCCCGGGEEESSTTSCEEECCTTGGG
T ss_pred EEEEecCCCCHHHHHHHcc-CCCHHHHHHHHHHHHHHHHHHH----cCCCCEEECCCCHHHEEEECCCCCEEEeeCCCcc
Confidence 9999999999999998653 3899999999999999999999 566 99999999999998 88999999999997
Q ss_pred ccCCCCCceeeeccccCccccCCCccCCCCcCcccchhhHHHHHHHHHhCCCCCCccccCcchHHHHHHhhCCCchhhhc
Q 005040 577 LLGEGEDSVIQTMTMATIGYMAPEYGSEGIVSTKCDVYSYGVLLMETFTEKKPTDEMFTGEMSLRRWVKESLPHRLTEVV 656 (717)
Q Consensus 577 ~~~~~~~~~~~~~~~~t~~y~aPE~~~~~~~~~~~Dvws~G~il~el~tg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~ 656 (717)
...... .....||+.|+|||++.+ .++.++||||+|+++|||++|+.||...... ..............
T Consensus 181 ~~~~~~----~~~~~~t~~y~aPE~~~~-~~~~~~Di~slG~~l~~l~~g~~pf~~~~~~----~~~~~~~~~~~~~~-- 249 (290)
T 1t4h_A 181 LKRASF----AKAVIGTPEFMAPEMYEE-KYDESVDVYAFGMCMLEMATSEYPYSECQNA----AQIYRRVTSGVKPA-- 249 (290)
T ss_dssp GCCTTS----BEESCSSCCCCCGGGGGT-CCCTHHHHHHHHHHHHHHHHSSCTTTTCSSH----HHHHHHHTTTCCCG--
T ss_pred cccccc----cccccCCcCcCCHHHHhc-cCCCcchHHHHHHHHHHHHhCCCCCCCcCcH----HHHHHHHhccCCcc--
Confidence 654322 233468999999998764 5899999999999999999999999753221 11111111100000
Q ss_pred cccchhhhhhhhhhHHHHHHHHHHHhhccCCCCCCCCCHHHHHH
Q 005040 657 DANLVREEQAFSDKMDCLFSIMDLALDCCMDTPHKRIHMTDAAA 700 (717)
Q Consensus 657 ~~~~~~~~~~~~~~~~~~~~l~~li~~cl~~~P~~Rpt~~ev~~ 700 (717)
.....++.++.+++.+||+.||++|||+.|+++
T Consensus 250 -----------~~~~~~~~~l~~li~~~l~~dp~~Rps~~ell~ 282 (290)
T 1t4h_A 250 -----------SFDKVAIPEVKEIIEGCIRQNKDERYSIKDLLN 282 (290)
T ss_dssp -----------GGGGCCCHHHHHHHHHHSCSSGGGSCCHHHHHT
T ss_pred -----------ccCCCCCHHHHHHHHHHccCChhhCCCHHHHhh
Confidence 001122356889999999999999999999985
No 168
>1u46_A ACK-1, activated CDC42 kinase 1; tyrosine kinase, transferase; 2.00A {Homo sapiens} SCOP: d.144.1.7 PDB: 1u4d_A* 1u54_A* 3eqr_A* 3eqp_B*
Probab=100.00 E-value=2.8e-40 Score=339.56 Aligned_cols=260 Identities=24% Similarity=0.393 Sum_probs=200.3
Q ss_pred hccCCccccccccccEEEEEEEec--CCC--eEEEEEechhh---HHHHHHHHHHHHHHHhcCCCceeeEeeeeecCCee
Q 005040 426 TDEFNECNLLGTGGFGSVYKGTLS--DGT--NVAIKIFNLQL---ERAFRSFDSECEILRNVRHRNLLKILGSCSNLDFK 498 (717)
Q Consensus 426 ~~~~~~~~~lg~G~~g~V~~~~~~--~~~--~vavK~~~~~~---~~~~~~~~~e~~~l~~l~hpniv~~~~~~~~~~~~ 498 (717)
.++|++.+.||+|+||.||+|.+. +++ .||+|+++... ....+.+.+|++++++++||||+++++++.+.. .
T Consensus 17 ~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~-~ 95 (291)
T 1u46_A 17 EKDLRLLEKLGDGSFGVVRRGEWDAPSGKTVSVAVKCLKPDVLSQPEAMDDFIREVNAMHSLDHRNLIRLYGVVLTPP-M 95 (291)
T ss_dssp GGGEEEEEECC----CCCEEEEEECTTSCEEEEEEEC--------CHHHHHHHHHHHHHHHCCCTTBCCEEEEECSSS-C
T ss_pred hhHeeeeeeecCCCceeEEEEEeccCCCceeEEEEEEEccCccCCHHHHHHHHHHHHHHHhCCCCCcccEEEEEccCC-c
Confidence 368999999999999999999863 333 68999987542 345577899999999999999999999998765 7
Q ss_pred EEEEEccCCCCHHHHHhhCCCCCCHHHHHHHHHHHHHHHHHHhhcCCCCCeEecCCCCCCeeeCCCCcEEEeeecccccc
Q 005040 499 ALVLEFMPNGSLEKWLYSHNYFLDILQRLNIMIDVGSALEYLHHCHSSAPIIHCDLKPTNILLDENMVAHVSDFGISKLL 578 (717)
Q Consensus 499 ~lv~e~~~~g~L~~~l~~~~~~~~~~~~~~i~~~i~~~l~~LH~~~~~~~ivH~dlk~~Nill~~~~~~kl~Dfgl~~~~ 578 (717)
++||||+++++|.+++......+++..+..++.|+++||.||| +.+|+||||||+||+++.++.+||+|||++...
T Consensus 96 ~~v~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~i~~~l~~lH----~~~i~H~dikp~Nili~~~~~~kl~Dfg~~~~~ 171 (291)
T 1u46_A 96 KMVTELAPLGSLLDRLRKHQGHFLLGTLSRYAVQVAEGMGYLE----SKRFIHRDLAARNLLLATRDLVKIGDFGLMRAL 171 (291)
T ss_dssp EEEEECCTTCBHHHHHHHHGGGSCHHHHHHHHHHHHHHHHHHH----HTTEECSCCCGGGEEEEETTEEEECCCTTCEEC
T ss_pred eeeEecccCCCHHHHHHhccCCcCHHHHHHHHHHHHHHHHHHH----hCCcccCCCchheEEEcCCCCEEEccccccccc
Confidence 9999999999999999876666899999999999999999999 678999999999999999999999999999877
Q ss_pred CCCCCce-eeeccccCccccCCCccCCCCcCcccchhhHHHHHHHHHh-CCCCCCccccCcchHHHHHHhhCCCchhhhc
Q 005040 579 GEGEDSV-IQTMTMATIGYMAPEYGSEGIVSTKCDVYSYGVLLMETFT-EKKPTDEMFTGEMSLRRWVKESLPHRLTEVV 656 (717)
Q Consensus 579 ~~~~~~~-~~~~~~~t~~y~aPE~~~~~~~~~~~Dvws~G~il~el~t-g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~ 656 (717)
....... ......+|..|+|||+..+..++.++||||||+++|||++ |+.||...... .....+.....
T Consensus 172 ~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~~g~~p~~~~~~~--~~~~~~~~~~~------- 242 (291)
T 1u46_A 172 PQNDDHYVMQEHRKVPFAWCAPESLKTRTFSHASDTWMFGVTLWEMFTYGQEPWIGLNGS--QILHKIDKEGE------- 242 (291)
T ss_dssp CC-CCEEEC-----CCGGGCCHHHHHHCEEEHHHHHHHHHHHHHHHHTTSCCTTTTCCHH--HHHHHHHTSCC-------
T ss_pred cccccchhhhccCCCCceeeCchhhcCCCCCchhhHHHHHHHHHHHHhCCCCCcccCCHH--HHHHHHHccCC-------
Confidence 5443222 2234457889999999988889999999999999999999 99999763221 11111111000
Q ss_pred cccchhhhhhhhhhHHHHHHHHHHHhhccCCCCCCCCCHHHHHHHHHHhHHh
Q 005040 657 DANLVREEQAFSDKMDCLFSIMDLALDCCMDTPHKRIHMTDAAAKLRKIKAK 708 (717)
Q Consensus 657 ~~~~~~~~~~~~~~~~~~~~l~~li~~cl~~~P~~Rpt~~ev~~~L~~~~~~ 708 (717)
..+....++.++.+++.+||+.||++|||+.++++.|+++..+
T Consensus 243 ---------~~~~~~~~~~~l~~li~~~l~~~p~~Rps~~~l~~~l~~~~~~ 285 (291)
T 1u46_A 243 ---------RLPRPEDCPQDIYNVMVQCWAHKPEDRPTFVALRDFLLEAQPT 285 (291)
T ss_dssp ---------CCCCCTTCCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHC--
T ss_pred ---------CCCCCcCcCHHHHHHHHHHccCCcccCcCHHHHHHHHHHhCcc
Confidence 0011123456788999999999999999999999999987654
No 169
>1ua2_A CAK, cell division protein kinase 7; cell cycle, phosphorylation, protein-protein interaction, PR kinase, cell cycle, transferase; HET: TPO ATP; 3.02A {Homo sapiens} SCOP: d.144.1.7
Probab=100.00 E-value=7.3e-40 Score=344.87 Aligned_cols=271 Identities=26% Similarity=0.318 Sum_probs=200.9
Q ss_pred HHHhccCCccccccccccEEEEEEEec-CCCeEEEEEechhhHH-----HHHHHHHHHHHHHhcCCCceeeEeeeeecCC
Q 005040 423 RRATDEFNECNLLGTGGFGSVYKGTLS-DGTNVAIKIFNLQLER-----AFRSFDSECEILRNVRHRNLLKILGSCSNLD 496 (717)
Q Consensus 423 ~~~~~~~~~~~~lg~G~~g~V~~~~~~-~~~~vavK~~~~~~~~-----~~~~~~~e~~~l~~l~hpniv~~~~~~~~~~ 496 (717)
....++|++.+.||+|+||.||+|... +|+.||||++...... ..+.+.+|++++++++||||+++++++.+.+
T Consensus 6 ~~~~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~ 85 (346)
T 1ua2_A 6 KSRAKRYEKLDFLGEGQFATVYKARDKNTNQIVAIKKIKLGHRSEAKDGINRTALREIKLLQELSHPNIIGLLDAFGHKS 85 (346)
T ss_dssp -------CEEEEEEEETTEEEEEEECSSCCSEEEEEEC------------CTHHHHHHHHHHHCCCTTBCCEEEEECCTT
T ss_pred HHHhcccEEEeEEeecCCEEEEEEEECCCCcEEEEEEEecCCcchhhhhhhHHHHHHHHHHhhCCCCCCCeEEEEEeeCC
Confidence 445678999999999999999999975 6899999999754321 1246788999999999999999999999999
Q ss_pred eeEEEEEccCCCCHHHHHhhCCCCCCHHHHHHHHHHHHHHHHHHhhcCCCCCeEecCCCCCCeeeCCCCcEEEeeecccc
Q 005040 497 FKALVLEFMPNGSLEKWLYSHNYFLDILQRLNIMIDVGSALEYLHHCHSSAPIIHCDLKPTNILLDENMVAHVSDFGISK 576 (717)
Q Consensus 497 ~~~lv~e~~~~g~L~~~l~~~~~~~~~~~~~~i~~~i~~~l~~LH~~~~~~~ivH~dlk~~Nill~~~~~~kl~Dfgl~~ 576 (717)
..++||||+++ +|.+++......+++..+..++.|+++||.||| +.+|+||||||+||+++.++.+||+|||++.
T Consensus 86 ~~~lv~e~~~~-~l~~~~~~~~~~~~~~~~~~~~~qi~~~l~~lH----~~~ivH~Dlkp~Nil~~~~~~~kl~Dfg~a~ 160 (346)
T 1ua2_A 86 NISLVFDFMET-DLEVIIKDNSLVLTPSHIKAYMLMTLQGLEYLH----QHWILHRDLKPNNLLLDENGVLKLADFGLAK 160 (346)
T ss_dssp CCEEEEECCSE-EHHHHHTTCCSSCCSSHHHHHHHHHHHHHHHHH----HTTCCCCCCCGGGEEECTTCCEEECCCGGGS
T ss_pred ceEEEEEcCCC-CHHHHHHhcCcCCCHHHHHHHHHHHHHHHHHHH----HCCEECCCCCHHHEEEcCCCCEEEEecccce
Confidence 99999999975 999999887777899999999999999999999 6789999999999999999999999999998
Q ss_pred ccCCCCCceeeeccccCccccCCCccCC-CCcCcccchhhHHHHHHHHHhCCCCCCccccCcchHHHHHHhhC-CC--ch
Q 005040 577 LLGEGEDSVIQTMTMATIGYMAPEYGSE-GIVSTKCDVYSYGVLLMETFTEKKPTDEMFTGEMSLRRWVKESL-PH--RL 652 (717)
Q Consensus 577 ~~~~~~~~~~~~~~~~t~~y~aPE~~~~-~~~~~~~Dvws~G~il~el~tg~~p~~~~~~~~~~~~~~~~~~~-~~--~~ 652 (717)
....... ......+|+.|+|||++.+ ..++.++||||+||++|||++|.+||.+.... ..+........ +. .+
T Consensus 161 ~~~~~~~--~~~~~~~t~~y~aPE~~~~~~~~~~~~DiwslG~il~ell~g~~~~~~~~~~-~~~~~i~~~~~~~~~~~~ 237 (346)
T 1ua2_A 161 SFGSPNR--AYTHQVVTRWYRAPELLFGARMYGVGVDMWAVGCILAELLLRVPFLPGDSDL-DQLTRIFETLGTPTEEQW 237 (346)
T ss_dssp TTTSCCC--CCCCSCCCCTTCCHHHHTTCSCCCHHHHHHHHHHHHHHHHHSSCSSCCSSHH-HHHHHHHHHHCCCCTTTS
T ss_pred eccCCcc--cCCcccccccccCchHhhCCCCCCchhhhHhHHHHHHHHHHCCCCCCCCCHH-HHHHHHHHHcCCCChhhh
Confidence 7643322 2234568999999998865 45899999999999999999999998764221 12222222111 10 11
Q ss_pred hhhc---cccchhhhhh---hhhhHHHHHHHHHHHhhccCCCCCCCCCHHHHHHH
Q 005040 653 TEVV---DANLVREEQA---FSDKMDCLFSIMDLALDCCMDTPHKRIHMTDAAAK 701 (717)
Q Consensus 653 ~~~~---~~~~~~~~~~---~~~~~~~~~~l~~li~~cl~~~P~~Rpt~~ev~~~ 701 (717)
.... +.......+. ......++.++.+++.+||+.||++|||++|+++.
T Consensus 238 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~Rpt~~ell~h 292 (346)
T 1ua2_A 238 PDMCSLPDYVTFKSFPGIPLHHIFSAAGDDLLDLIQGLFLFNPCARITATQALKM 292 (346)
T ss_dssp SSTTSSTTCCCCCCCCCCCHHHHCTTCCHHHHHHHHHHHCSSTTTSCCHHHHHTS
T ss_pred hhhccCcccccccccCCCChHHhhccCCHHHHHHHHHHhccChhhCCCHHHHhcC
Confidence 1100 0000000000 00112345678999999999999999999999863
No 170
>3ttj_A Mitogen-activated protein kinase 10; JNK3, protein kinase in transferase-transferase inhibitor complex; HET: JBI; 2.10A {Homo sapiens} PDB: 3tti_A* 1jnk_A*
Probab=100.00 E-value=1.2e-39 Score=355.37 Aligned_cols=264 Identities=22% Similarity=0.227 Sum_probs=195.9
Q ss_pred hccCCccccccccccEEEEEEEec-CCCeEEEEEechhh--HHHHHHHHHHHHHHHhcCCCceeeEeeeeecC------C
Q 005040 426 TDEFNECNLLGTGGFGSVYKGTLS-DGTNVAIKIFNLQL--ERAFRSFDSECEILRNVRHRNLLKILGSCSNL------D 496 (717)
Q Consensus 426 ~~~~~~~~~lg~G~~g~V~~~~~~-~~~~vavK~~~~~~--~~~~~~~~~e~~~l~~l~hpniv~~~~~~~~~------~ 496 (717)
.++|++.+.||+|+||.||+|... +++.||||++.... ....+.+.+|+++++.++||||+++++++... .
T Consensus 61 ~~~y~~~~~lG~G~~g~V~~a~~~~~~~~vAiK~~~~~~~~~~~~~~~~~E~~~l~~l~hpnIv~l~~~~~~~~~~~~~~ 140 (464)
T 3ttj_A 61 LKRYQNLKPIGSGAQGIVCAAYDAVLDRNVAIKKLSRPFQNQTHAKRAYRELVLMKCVNHKNIISLLNVFTPQKTLEEFQ 140 (464)
T ss_dssp ETTEEEEEEEEECSSCEEEEEEETTTTEEEEEEEEESGGGSHHHHHHHHHHHHHHHHCCCTTBCCCSEEECSCCSTTTCC
T ss_pred cCCeEEEEEeecCCCeEEEEEEECCCCCEEEEEEECccccChHHHHHHHHHHHHHHhCCCCCCCcEEEEEccCCccccCC
Confidence 468999999999999999999865 78999999997542 34456788999999999999999999998654 4
Q ss_pred eeEEEEEccCCCCHHHHHhhCCCCCCHHHHHHHHHHHHHHHHHHhhcCCCCCeEecCCCCCCeeeCCCCcEEEeeecccc
Q 005040 497 FKALVLEFMPNGSLEKWLYSHNYFLDILQRLNIMIDVGSALEYLHHCHSSAPIIHCDLKPTNILLDENMVAHVSDFGISK 576 (717)
Q Consensus 497 ~~~lv~e~~~~g~L~~~l~~~~~~~~~~~~~~i~~~i~~~l~~LH~~~~~~~ivH~dlk~~Nill~~~~~~kl~Dfgl~~ 576 (717)
..|+||||+++ +|.+.+.. .+++..+..++.|++.||+||| +.+|+||||||+|||++.++.+||+|||+++
T Consensus 141 ~~~lv~E~~~~-~l~~~~~~---~l~~~~~~~~~~qil~aL~~lH----~~~iiHrDlkp~NIll~~~~~~kl~DFG~a~ 212 (464)
T 3ttj_A 141 DVYLVMELMDA-NLCQVIQM---ELDHERMSYLLYQMLCGIKHLH----SAGIIHRDLKPSNIVVKSDCTLKILDFGLAR 212 (464)
T ss_dssp EEEEEEECCSE-EHHHHHTS---CCCHHHHHHHHHHHHHHHHHHH----HTTCCCCCCCGGGEEECTTSCEEECCCCCC-
T ss_pred eEEEEEeCCCC-CHHHHHhh---cCCHHHHHHHHHHHHHHHHHHH----HCCcccCCCChHhEEEeCCCCEEEEEEEeee
Confidence 57999999975 57776653 3889999999999999999999 6789999999999999999999999999998
Q ss_pred ccCCCCCceeeeccccCccccCCCccCCCCcCcccchhhHHHHHHHHHhCCCCCCccccCcchHHHHHHhhCCCc-----
Q 005040 577 LLGEGEDSVIQTMTMATIGYMAPEYGSEGIVSTKCDVYSYGVLLMETFTEKKPTDEMFTGEMSLRRWVKESLPHR----- 651 (717)
Q Consensus 577 ~~~~~~~~~~~~~~~~t~~y~aPE~~~~~~~~~~~Dvws~G~il~el~tg~~p~~~~~~~~~~~~~~~~~~~~~~----- 651 (717)
...... ......||++|+|||++.+..|+.++||||+||++|||++|+.||.+.... ..+...+.......
T Consensus 213 ~~~~~~---~~~~~~gt~~y~aPE~~~~~~~~~~~DiwSlG~il~ell~g~~pF~g~~~~-~~~~~i~~~lg~p~~~~~~ 288 (464)
T 3ttj_A 213 TAGTSF---MMTPYVVTRYYRAPEVILGMGYKENVDIWSVGCIMGEMVRHKILFPGRDYI-DQWNKVIEQLGTPCPEFMK 288 (464)
T ss_dssp ----CC---CC----CCCTTCCHHHHTTCCCCTTHHHHHHHHHHHHHHHSSCSSCCSSHH-HHHHHHHHHHCSCCHHHHT
T ss_pred ecCCCc---ccCCCcccccccCHHHHcCCCCCHHHHHHHHHHHHHHHHhCCCCCCCCCHH-HHHHHHHHhcCCCCHHHHH
Confidence 765322 224457899999999999999999999999999999999999999763211 11111111111000
Q ss_pred -----hhhhccc-------cchhhhh------hhhhhHHHHHHHHHHHhhccCCCCCCCCCHHHHHHH
Q 005040 652 -----LTEVVDA-------NLVREEQ------AFSDKMDCLFSIMDLALDCCMDTPHKRIHMTDAAAK 701 (717)
Q Consensus 652 -----~~~~~~~-------~~~~~~~------~~~~~~~~~~~l~~li~~cl~~~P~~Rpt~~ev~~~ 701 (717)
....+.. .+....+ ........+.++.+|+.+||..||++|||++|+++.
T Consensus 289 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~dLl~~mL~~dP~~R~ta~e~L~H 356 (464)
T 3ttj_A 289 KLQPTVRNYVENRPKYAGLTFPKLFPDSLFPADSEHNKLKASQARDLLSKMLVIDPAKRISVDDALQH 356 (464)
T ss_dssp TSCHHHHHHHTTSCCCCCCCHHHHSCGGGSCCSSHHHHHHHHHHHHHHHHHSCSSTTTSCCHHHHHTS
T ss_pred HcchhhhhHhhcccccCCCChHHhCcccccccccccccccCHHHHHHHHHHcCCChhhCCCHHHHhcC
Confidence 0000000 0000000 000112235678999999999999999999999863
No 171
>3ll6_A Cyclin G-associated kinase; transferase, protein kinase, serine/threonine kinase, cyclin clathrine, membrane trafficking, structural genomics; 2.10A {Homo sapiens}
Probab=100.00 E-value=1.2e-39 Score=342.42 Aligned_cols=257 Identities=21% Similarity=0.253 Sum_probs=191.5
Q ss_pred hccCCccccccccccEEEEEEEec-CCCeEEEEEechhhHHHHHHHHHHHHHHHhcC-CCceeeEeeee--------ecC
Q 005040 426 TDEFNECNLLGTGGFGSVYKGTLS-DGTNVAIKIFNLQLERAFRSFDSECEILRNVR-HRNLLKILGSC--------SNL 495 (717)
Q Consensus 426 ~~~~~~~~~lg~G~~g~V~~~~~~-~~~~vavK~~~~~~~~~~~~~~~e~~~l~~l~-hpniv~~~~~~--------~~~ 495 (717)
..+|++.+.||+|+||.||+|++. +++.||||++........+.+.+|+.+++++. ||||+++++++ ...
T Consensus 27 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~e~~~l~~l~~h~~iv~~~~~~~~~~~~~~~~~ 106 (337)
T 3ll6_A 27 ELRLRVRRVLAEGGFAFVYEAQDVGSGREYALKRLLSNEEEKNRAIIQEVCFMKKLSGHPNIVQFCSAASIGKEESDTGQ 106 (337)
T ss_dssp TEEEEEEEEEECCSSEEEEEEEETTTCCEEEEEEEEESSHHHHHHHHHHHHHHHHHTTSTTBCCEEEEEEECTTTSTTSS
T ss_pred CceEEEEEEEccCCceEEEEEEECCCCcEEEEEEecCCchHHHHHHHHHHHHHHHhccCCChhhccccccccccccccCC
Confidence 358999999999999999999975 78999999987666666678899999999996 99999999998 334
Q ss_pred CeeEEEEEccCCCCHHHHHhh--CCCCCCHHHHHHHHHHHHHHHHHHhhcCCCCC--eEecCCCCCCeeeCCCCcEEEee
Q 005040 496 DFKALVLEFMPNGSLEKWLYS--HNYFLDILQRLNIMIDVGSALEYLHHCHSSAP--IIHCDLKPTNILLDENMVAHVSD 571 (717)
Q Consensus 496 ~~~~lv~e~~~~g~L~~~l~~--~~~~~~~~~~~~i~~~i~~~l~~LH~~~~~~~--ivH~dlk~~Nill~~~~~~kl~D 571 (717)
...++||||+. |+|.+++.. ....+++..++.++.|++.||.||| +.+ |+||||||+||+++.++.+||+|
T Consensus 107 ~~~~lv~e~~~-g~L~~~l~~~~~~~~~~~~~~~~i~~qi~~~l~~LH----~~~~~ivH~Dikp~NIl~~~~~~~kl~D 181 (337)
T 3ll6_A 107 AEFLLLTELCK-GQLVEFLKKMESRGPLSCDTVLKIFYQTCRAVQHMH----RQKPPIIHRDLKVENLLLSNQGTIKLCD 181 (337)
T ss_dssp EEEEEEEECCS-EEHHHHHHHHHTTCSCCHHHHHHHHHHHHHHHHHHH----TSSSCCBCCCCCGGGCEECTTSCEEBCC
T ss_pred ceEEEEEEecC-CCHHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHH----hCCCCEEEccCCcccEEECCCCCEEEec
Confidence 55799999996 799999874 3455999999999999999999999 567 99999999999999999999999
Q ss_pred eccccccCCCCCce----------eeeccccCccccCCCcc---CCCCcCcccchhhHHHHHHHHHhCCCCCCccccCcc
Q 005040 572 FGISKLLGEGEDSV----------IQTMTMATIGYMAPEYG---SEGIVSTKCDVYSYGVLLMETFTEKKPTDEMFTGEM 638 (717)
Q Consensus 572 fgl~~~~~~~~~~~----------~~~~~~~t~~y~aPE~~---~~~~~~~~~Dvws~G~il~el~tg~~p~~~~~~~~~ 638 (717)
||++.......... ......+|+.|+|||++ .+..++.++||||||+++|||++|+.||......
T Consensus 182 fg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~y~aPE~~~~~~~~~~~~~~Dv~slG~il~el~~g~~p~~~~~~~-- 259 (337)
T 3ll6_A 182 FGSATTISHYPDYSWSAQRRALVEEEITRNTTPMYRTPEIIDLYSNFPIGEKQDIWALGCILYLLCFRQHPFEDGAKL-- 259 (337)
T ss_dssp CTTCBCCSSCC-------------------------------CCTTSCSSHHHHHHHHHHHHHHHHHSSCCC--------
T ss_pred CccceeccccCcccccccccccchhhccccCCCCcCChhhhhccccCCCChHHhHHHHHHHHHHHHhCCCCCcchhHH--
Confidence 99998765432211 11134589999999987 5677899999999999999999999999652211
Q ss_pred hHHHHHHhhCCCchhhhccccchhhhhhhhhhHHHHHHHHHHHhhccCCCCCCCCCHHHHHHHHHHhHHhh
Q 005040 639 SLRRWVKESLPHRLTEVVDANLVREEQAFSDKMDCLFSIMDLALDCCMDTPHKRIHMTDAAAKLRKIKAKF 709 (717)
Q Consensus 639 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~cl~~~P~~Rpt~~ev~~~L~~~~~~~ 709 (717)
......... +....++..+.+++.+||+.||++|||+.|+++.|+++.+..
T Consensus 260 ---~~~~~~~~~-----------------~~~~~~~~~~~~li~~~l~~~p~~Rps~~e~l~~l~~~~~~~ 310 (337)
T 3ll6_A 260 ---RIVNGKYSI-----------------PPHDTQYTVFHSLIRAMLQVNPEERLSIAEVVHQLQEIAAAR 310 (337)
T ss_dssp ---------CCC-----------------CTTCCSSGGGHHHHHHHSCSSGGGSCCHHHHHHHHHHHHHHT
T ss_pred ---HhhcCcccC-----------------CcccccchHHHHHHHHHccCChhhCcCHHHHHHHHHHHHhcc
Confidence 111111000 000112233679999999999999999999999999987654
No 172
>3i6u_A CDS1, serine/threonine-protein kinase CHK2; Ser/Thr protein kinase, FHA domain, ATP-binding, cell cycle, mutation, LI-fraumeni syndrome, magnesium; 3.00A {Homo sapiens} PDB: 3i6w_A
Probab=100.00 E-value=1.2e-39 Score=351.55 Aligned_cols=253 Identities=26% Similarity=0.333 Sum_probs=194.3
Q ss_pred HHhccCCccccccccccEEEEEEEec-CCCeEEEEEechhh--------HHHHHHHHHHHHHHHhcCCCceeeEeeeeec
Q 005040 424 RATDEFNECNLLGTGGFGSVYKGTLS-DGTNVAIKIFNLQL--------ERAFRSFDSECEILRNVRHRNLLKILGSCSN 494 (717)
Q Consensus 424 ~~~~~~~~~~~lg~G~~g~V~~~~~~-~~~~vavK~~~~~~--------~~~~~~~~~e~~~l~~l~hpniv~~~~~~~~ 494 (717)
...++|.+.+.||+|+||.||+|... +++.||||++.... ......+.+|++++++++||||+++++++..
T Consensus 132 ~~~~~y~~~~~LG~G~~g~V~~a~~~~~~~~vavK~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~hpniv~l~~~~~~ 211 (419)
T 3i6u_A 132 ALRDEYIMSKTLGSGACGEVKLAFERKTCKKVAIRIISKRKFAIGSAREADPALNVETEIEILKKLNHPCIIKIKNFFDA 211 (419)
T ss_dssp HHHTTEEEEEEEEECSSSEEEEEEETTTCCEEEEEEEEGGGGTTC--------CCHHHHHHHHHHCCCTTBCCCCEEEES
T ss_pred hhhccEEEEeEEeeCCCeEEEEEEECCCCcEEEEEEEEechhcccccccchhHHHHHHHHHHHHhCCCCCEeeEEEEEec
Confidence 44678999999999999999999875 78999999987543 1122347889999999999999999999864
Q ss_pred CCeeEEEEEccCCCCHHHHHhhCCCCCCHHHHHHHHHHHHHHHHHHhhcCCCCCeEecCCCCCCeeeCCCC---cEEEee
Q 005040 495 LDFKALVLEFMPNGSLEKWLYSHNYFLDILQRLNIMIDVGSALEYLHHCHSSAPIIHCDLKPTNILLDENM---VAHVSD 571 (717)
Q Consensus 495 ~~~~~lv~e~~~~g~L~~~l~~~~~~~~~~~~~~i~~~i~~~l~~LH~~~~~~~ivH~dlk~~Nill~~~~---~~kl~D 571 (717)
+..++||||+++|+|.+++.... .+++..+..++.|++.||+||| +.+|+||||||+|||++.++ .+||+|
T Consensus 212 -~~~~lv~e~~~~g~L~~~l~~~~-~~~~~~~~~i~~qi~~~l~~LH----~~~ivHrDlkp~NIll~~~~~~~~~kl~D 285 (419)
T 3i6u_A 212 -EDYYIVLELMEGGELFDKVVGNK-RLKEATCKLYFYQMLLAVQYLH----ENGIIHRDLKPENVLLSSQEEDCLIKITD 285 (419)
T ss_dssp -SEEEEEEECCTTCBGGGGTSSSC-CCCHHHHHHHHHHHHHHHHHHH----HTTCCCSCCCGGGEEESSSSSSCCEEECC
T ss_pred -CceEEEEEcCCCCcHHHHHhccC-CCCHHHHHHHHHHHHHHHHHHH----HCCccccCCChHhEEEecCCCcceEEEee
Confidence 45799999999999999887654 4899999999999999999999 57899999999999997544 599999
Q ss_pred eccccccCCCCCceeeeccccCccccCCCccC---CCCcCcccchhhHHHHHHHHHhCCCCCCccccCcchHHHHHHhhC
Q 005040 572 FGISKLLGEGEDSVIQTMTMATIGYMAPEYGS---EGIVSTKCDVYSYGVLLMETFTEKKPTDEMFTGEMSLRRWVKESL 648 (717)
Q Consensus 572 fgl~~~~~~~~~~~~~~~~~~t~~y~aPE~~~---~~~~~~~~Dvws~G~il~el~tg~~p~~~~~~~~~~~~~~~~~~~ 648 (717)
||+++...... ......||+.|+|||++. ...++.++||||+||++|||++|+.||...... ......+....
T Consensus 286 FG~a~~~~~~~---~~~~~~gt~~y~aPE~~~~~~~~~~~~~~DiwslG~il~~lltg~~pf~~~~~~-~~~~~~i~~~~ 361 (419)
T 3i6u_A 286 FGHSKILGETS---LMRTLCGTPTYLAPEVLVSVGTAGYNRAVDCWSLGVILFICLSGYPPFSEHRTQ-VSLKDQITSGK 361 (419)
T ss_dssp SSTTTSCC--------------CTTCCTTTTC----CTTHHHHHHHHHHHHHHHHHHSSCSSCCCSSS-CCHHHHHHTTC
T ss_pred cccceecCCCc---cccccCCCCCccCceeeecCCCCCCCchhhhHhHHHHHHHHHHCCCCCCCCcch-HHHHHHHhcCC
Confidence 99998765322 223457899999999875 367889999999999999999999999763322 22222222111
Q ss_pred CCchhhhccccchhhhhhhhhhHHHHHHHHHHHhhccCCCCCCCCCHHHHHH
Q 005040 649 PHRLTEVVDANLVREEQAFSDKMDCLFSIMDLALDCCMDTPHKRIHMTDAAA 700 (717)
Q Consensus 649 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~cl~~~P~~Rpt~~ev~~ 700 (717)
..... .....++.++.+++.+||+.||++|||++|+++
T Consensus 362 ~~~~~--------------~~~~~~~~~~~~li~~~L~~dP~~Rps~~e~l~ 399 (419)
T 3i6u_A 362 YNFIP--------------EVWAEVSEKALDLVKKLLVVDPKARFTTEEALR 399 (419)
T ss_dssp CCCCH--------------HHHTTSCHHHHHHHHHHSCSSTTTSCCHHHHHH
T ss_pred CCCCc--------------hhhcccCHHHHHHHHHHccCChhHCcCHHHHhC
Confidence 10000 011234566889999999999999999999986
No 173
>2y7j_A Phosphorylase B kinase gamma catalytic chain, testis/liver isoform; transferase; HET: B49; 2.50A {Homo sapiens} PDB: 1h0t_A 1lp1_B 1q2n_A 2spz_A 3mzw_B* 1ss1_A 2jwd_A 1bdc_A 1bdd_A 1fc2_C* 2b87_A 2b88_A 1h0t_B 1lp1_A 2b87_B 2b89_A 3s1k_A
Probab=100.00 E-value=5.1e-39 Score=340.42 Aligned_cols=258 Identities=26% Similarity=0.368 Sum_probs=207.7
Q ss_pred HHHHHHHhccCCccccccccccEEEEEEEec-CCCeEEEEEechhh--------HHHHHHHHHHHHHHHhc-CCCceeeE
Q 005040 419 YLDIRRATDEFNECNLLGTGGFGSVYKGTLS-DGTNVAIKIFNLQL--------ERAFRSFDSECEILRNV-RHRNLLKI 488 (717)
Q Consensus 419 ~~~~~~~~~~~~~~~~lg~G~~g~V~~~~~~-~~~~vavK~~~~~~--------~~~~~~~~~e~~~l~~l-~hpniv~~ 488 (717)
+.......++|++.+.||+|+||.||+|... +|+.||||++.... ....+.+.+|+++++++ +||||+++
T Consensus 86 ~~~~~~~~~~y~~~~~lg~G~~g~Vy~a~~~~~g~~vavK~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~~hp~iv~~ 165 (365)
T 2y7j_A 86 WAAAKEFYQKYDPKDVIGRGVSSVVRRCVHRATGHEFAVKIMEVTAERLSPEQLEEVREATRRETHILRQVAGHPHIITL 165 (365)
T ss_dssp HHHHHHHHHHEEEEEEEEECSSEEEEEEEETTTCCEEEEEEEETTSSCCCHHHHHHHHHHHHHHHHHHHHHTTCTTBCCE
T ss_pred chhhhhhhhhcccceEEecCCCEEEEEEEECCCCcEEEEEEEEccccccCHHHHHHHHHHHHHHHHHHHHhcCCCCEeEE
Confidence 3344556688999999999999999999986 79999999986542 23346688899999999 79999999
Q ss_pred eeeeecCCeeEEEEEccCCCCHHHHHhhCCCCCCHHHHHHHHHHHHHHHHHHhhcCCCCCeEecCCCCCCeeeCCCCcEE
Q 005040 489 LGSCSNLDFKALVLEFMPNGSLEKWLYSHNYFLDILQRLNIMIDVGSALEYLHHCHSSAPIIHCDLKPTNILLDENMVAH 568 (717)
Q Consensus 489 ~~~~~~~~~~~lv~e~~~~g~L~~~l~~~~~~~~~~~~~~i~~~i~~~l~~LH~~~~~~~ivH~dlk~~Nill~~~~~~k 568 (717)
++++......++||||+++++|.+++.... .+++..+..++.|++.||.||| +.+|+||||||+||+++.++.+|
T Consensus 166 ~~~~~~~~~~~lv~e~~~g~~L~~~l~~~~-~l~~~~~~~i~~qi~~~L~~LH----~~gi~H~Dlkp~NIl~~~~~~ik 240 (365)
T 2y7j_A 166 IDSYESSSFMFLVFDLMRKGELFDYLTEKV-ALSEKETRSIMRSLLEAVSFLH----ANNIVHRDLKPENILLDDNMQIR 240 (365)
T ss_dssp EEEEEBSSEEEEEECCCTTCBHHHHHHHHS-SCCHHHHHHHHHHHHHHHHHHH----HTTEECSCCSGGGEEECTTCCEE
T ss_pred EEEEeeCCEEEEEEEeCCCCcHHHHHHhcC-CCCHHHHHHHHHHHHHHHHHHH----hCCeecCCCCHHHEEECCCCCEE
Confidence 999999999999999999999999998653 4899999999999999999999 67899999999999999999999
Q ss_pred EeeeccccccCCCCCceeeeccccCccccCCCccC------CCCcCcccchhhHHHHHHHHHhCCCCCCccccCcchHHH
Q 005040 569 VSDFGISKLLGEGEDSVIQTMTMATIGYMAPEYGS------EGIVSTKCDVYSYGVLLMETFTEKKPTDEMFTGEMSLRR 642 (717)
Q Consensus 569 l~Dfgl~~~~~~~~~~~~~~~~~~t~~y~aPE~~~------~~~~~~~~Dvws~G~il~el~tg~~p~~~~~~~~~~~~~ 642 (717)
|+|||++..+..... .....||+.|+|||++. ...++.++|||||||++|||++|+.||..... .....
T Consensus 241 l~DfG~~~~~~~~~~---~~~~~gt~~y~aPE~~~~~~~~~~~~~~~~~Di~slG~il~ell~g~~pf~~~~~--~~~~~ 315 (365)
T 2y7j_A 241 LSDFGFSCHLEPGEK---LRELCGTPGYLAPEILKCSMDETHPGYGKEVDLWACGVILFTLLAGSPPFWHRRQ--ILMLR 315 (365)
T ss_dssp ECCCTTCEECCTTCC---BCCCCSCGGGCCHHHHHHTTCTTSCCBCTTHHHHHHHHHHHHHHHSSCSSCCSSH--HHHHH
T ss_pred EEecCcccccCCCcc---cccCCCCCCccChhhccccccccCcCCCchhhHHhHHHHHHHHHHCCCCCCCCCH--HHHHH
Confidence 999999987754322 23457899999999764 34688999999999999999999999965321 11111
Q ss_pred HHHhhCCCchhhhccccchhhhhhhhhhHHHHHHHHHHHhhccCCCCCCCCCHHHHHH
Q 005040 643 WVKESLPHRLTEVVDANLVREEQAFSDKMDCLFSIMDLALDCCMDTPHKRIHMTDAAA 700 (717)
Q Consensus 643 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~cl~~~P~~Rpt~~ev~~ 700 (717)
.+....... ..+....++..+.+++.+||+.||++|||+.|+++
T Consensus 316 ~i~~~~~~~--------------~~~~~~~~~~~~~~li~~~L~~dP~~Rps~~ell~ 359 (365)
T 2y7j_A 316 MIMEGQYQF--------------SSPEWDDRSSTVKDLISRLLQVDPEARLTAEQALQ 359 (365)
T ss_dssp HHHHTCCCC--------------CHHHHSSSCHHHHHHHHHHSCSSTTTSCCHHHHHH
T ss_pred HHHhCCCCC--------------CCcccccCCHHHHHHHHHHcCCChhHCcCHHHHhc
Confidence 111110000 00111234566889999999999999999999986
No 174
>2rku_A Serine/threonine-protein kinase PLK1; structure of PLK1, selectivity residues, POLO-like K structure based drug design, ATP-binding; HET: R78 TLA SRT TAR; 1.95A {Homo sapiens} PDB: 2v5q_A 2yac_A* 4a4l_A* 4a4o_A* 3kb7_A* 3d5w_A* 3d5u_A* 3d5v_A 3db8_A* 3dbc_A* 3dbd_A* 3d5x_A* 3db6_A* 3dbe_A* 3dbf_A*
Probab=100.00 E-value=1.6e-39 Score=334.34 Aligned_cols=249 Identities=22% Similarity=0.282 Sum_probs=205.6
Q ss_pred hccCCccccccccccEEEEEEEec-CCCeEEEEEechhh---HHHHHHHHHHHHHHHhcCCCceeeEeeeeecCCeeEEE
Q 005040 426 TDEFNECNLLGTGGFGSVYKGTLS-DGTNVAIKIFNLQL---ERAFRSFDSECEILRNVRHRNLLKILGSCSNLDFKALV 501 (717)
Q Consensus 426 ~~~~~~~~~lg~G~~g~V~~~~~~-~~~~vavK~~~~~~---~~~~~~~~~e~~~l~~l~hpniv~~~~~~~~~~~~~lv 501 (717)
.++|.+.+.||+|+||.||+|... +++.||+|++.... ....+.+.+|+.+++.++||||+++++++.+.+..++|
T Consensus 14 ~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~~a~K~~~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~~~lv 93 (294)
T 2rku_A 14 RRRYVRGRFLGKGGFAKCFEISDADTKEVFAGKIVPKSLLLKPHQREKMSMEISIHRSLAHQHVVGFHGFFEDNDFVFVV 93 (294)
T ss_dssp TEEEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEEGGGCCSHHHHHHHHHHHHHHHTCCCTTBCCEEEEEECSSEEEEE
T ss_pred ccceEEEEEEeecCCEEEEEEEECCCCceEEEEEechhhccCHHHHHHHHHHHHHHHhCCCCCEeeeeeeeccCCEEEEE
Confidence 468999999999999999999976 68899999987553 34456788999999999999999999999999999999
Q ss_pred EEccCCCCHHHHHhhCCCCCCHHHHHHHHHHHHHHHHHHhhcCCCCCeEecCCCCCCeeeCCCCcEEEeeeccccccCCC
Q 005040 502 LEFMPNGSLEKWLYSHNYFLDILQRLNIMIDVGSALEYLHHCHSSAPIIHCDLKPTNILLDENMVAHVSDFGISKLLGEG 581 (717)
Q Consensus 502 ~e~~~~g~L~~~l~~~~~~~~~~~~~~i~~~i~~~l~~LH~~~~~~~ivH~dlk~~Nill~~~~~~kl~Dfgl~~~~~~~ 581 (717)
|||+++++|.+++.... .+++..+..++.|+++||.||| +.+|+||||||+||+++.++.+||+|||++......
T Consensus 94 ~e~~~~~~L~~~~~~~~-~~~~~~~~~i~~qi~~~l~~lH----~~~i~H~dl~p~Nil~~~~~~~kl~dfg~~~~~~~~ 168 (294)
T 2rku_A 94 LELCRRRSLLELHKRRK-ALTEPEARYYLRQIVLGCQYLH----RNRVIHRDLKLGNLFLNEDLEVKIGDFGLATKVEYD 168 (294)
T ss_dssp EECCTTCBHHHHHHHHC-SCCHHHHHHHHHHHHHHHHHHH----HTTEECCCCCGGGEEECTTCCEEECCCTTCEECCST
T ss_pred EecCCCCCHHHHHHhcC-CCCHHHHHHHHHHHHHHHHHHH----HCCccccCCChHhEEEcCCCCEEEEeccCceecccC
Confidence 99999999999987654 4899999999999999999999 678999999999999999999999999999876432
Q ss_pred CCceeeeccccCccccCCCccCCCCcCcccchhhHHHHHHHHHhCCCCCCccccCcchHHHHHHhhCCCchhhhccccch
Q 005040 582 EDSVIQTMTMATIGYMAPEYGSEGIVSTKCDVYSYGVLLMETFTEKKPTDEMFTGEMSLRRWVKESLPHRLTEVVDANLV 661 (717)
Q Consensus 582 ~~~~~~~~~~~t~~y~aPE~~~~~~~~~~~Dvws~G~il~el~tg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 661 (717)
.. ......||+.|+|||...+..++.++||||+|+++|||++|+.||......+ ........ . .
T Consensus 169 ~~--~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~~l~~l~~g~~p~~~~~~~~-~~~~~~~~----~--------~- 232 (294)
T 2rku_A 169 GE--RKKVLCGTPNYIAPEVLSKKGHSFEVDVWSIGCIMYTLLVGKPPFETSCLKE-TYLRIKKN----E--------Y- 232 (294)
T ss_dssp TC--CBCCCCSCCSSCCHHHHTTSCBCTHHHHHHHHHHHHHHHHSSCTTCCSSHHH-HHHHHHTT----C--------C-
T ss_pred cc--ccccccCCCCcCCcchhccCCCCchhhHHHHHHHHHHHHhCCCCCCCCCHHH-HHHHHhhc----c--------C-
Confidence 22 1234568999999999999899999999999999999999999997632211 01110000 0 0
Q ss_pred hhhhhhhhhHHHHHHHHHHHhhccCCCCCCCCCHHHHHHH
Q 005040 662 REEQAFSDKMDCLFSIMDLALDCCMDTPHKRIHMTDAAAK 701 (717)
Q Consensus 662 ~~~~~~~~~~~~~~~l~~li~~cl~~~P~~Rpt~~ev~~~ 701 (717)
..+..++..+.+++.+||+.||++|||++|+++.
T Consensus 233 ------~~~~~~~~~~~~li~~~l~~~p~~Rps~~~ll~~ 266 (294)
T 2rku_A 233 ------SIPKHINPVAASLIQKMLQTDPTARPTINELLND 266 (294)
T ss_dssp ------CCCTTSCHHHHHHHHHHTCSSGGGSCCGGGGGGS
T ss_pred ------CCccccCHHHHHHHHHHcccChhhCcCHHHHhhC
Confidence 0011234567899999999999999999999873
No 175
>3rp9_A Mitogen-activated protein kinase; structural genomics, structural genomics consortium, SGC, TR; 2.40A {Toxoplasma gondii}
Probab=100.00 E-value=1.9e-39 Score=355.27 Aligned_cols=195 Identities=27% Similarity=0.389 Sum_probs=154.9
Q ss_pred hccCCccccccccccEEEEEEEec-CCCeEEEEEechhh--HHHHHHHHHHHHHHHhcCCCceeeEeeeee-----cCCe
Q 005040 426 TDEFNECNLLGTGGFGSVYKGTLS-DGTNVAIKIFNLQL--ERAFRSFDSECEILRNVRHRNLLKILGSCS-----NLDF 497 (717)
Q Consensus 426 ~~~~~~~~~lg~G~~g~V~~~~~~-~~~~vavK~~~~~~--~~~~~~~~~e~~~l~~l~hpniv~~~~~~~-----~~~~ 497 (717)
.++|++.+.||+|+||.||+|... +++.||||++.... ....+.+.+|++++++++||||+++++++. ....
T Consensus 52 ~~~y~~~~~lG~G~~g~V~~~~~~~~~~~vaiK~i~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~~~~~ 131 (458)
T 3rp9_A 52 PDRYEIRHLIGTGSYGHVCEAYDKLEKRVVAIKKILRVFEDLIDCKRILREIAILNRLNHDHVVKVLDIVIPKDVEKFDE 131 (458)
T ss_dssp CTTEEECCC-------CEEEEEECC--CEEEEEEECSTTSSHHHHHHHHHHHHHHHHCCCTTBCCEEEECCCSCTTTCCC
T ss_pred CCCeEEeeEeeecCCeEEEEEEECCCCcEEEEEEechhhcCHHHHHHHHHHHHHHHhCCCCCCCceEEEEecCCcccCce
Confidence 368999999999999999999875 78999999986532 334567889999999999999999999983 3357
Q ss_pred eEEEEEccCCCCHHHHHhhCCCCCCHHHHHHHHHHHHHHHHHHhhcCCCCCeEecCCCCCCeeeCCCCcEEEeeeccccc
Q 005040 498 KALVLEFMPNGSLEKWLYSHNYFLDILQRLNIMIDVGSALEYLHHCHSSAPIIHCDLKPTNILLDENMVAHVSDFGISKL 577 (717)
Q Consensus 498 ~~lv~e~~~~g~L~~~l~~~~~~~~~~~~~~i~~~i~~~l~~LH~~~~~~~ivH~dlk~~Nill~~~~~~kl~Dfgl~~~ 577 (717)
.|+||||+ +|+|.+++.... .+++..+..++.||+.||+||| +.+|+||||||+|||++.++.+||+|||+++.
T Consensus 132 ~~lv~e~~-~~~L~~~~~~~~-~l~~~~~~~~~~qi~~aL~~LH----~~~iiHrDlKp~NILl~~~~~~kl~DFGla~~ 205 (458)
T 3rp9_A 132 LYVVLEIA-DSDFKKLFRTPV-YLTELHIKTLLYNLLVGVKYVH----SAGILHRDLKPANCLVNQDCSVKVCDFGLART 205 (458)
T ss_dssp EEEEECCC-SEEHHHHHHSSC-CCCHHHHHHHHHHHHHHHHHHH----HTTCBCCCCCGGGEEECTTCCEEECCCTTCBC
T ss_pred EEEEEecc-ccchhhhcccCC-CCCHHHHHHHHHHHHHHHHHHH----hCCcCCCCCChhhEEECCCCCEeecccccchh
Confidence 89999998 479999998654 4899999999999999999999 67899999999999999999999999999987
Q ss_pred cCCCCCc-------------------------eeeeccccCccccCCCcc-CCCCcCcccchhhHHHHHHHHHhC
Q 005040 578 LGEGEDS-------------------------VIQTMTMATIGYMAPEYG-SEGIVSTKCDVYSYGVLLMETFTE 626 (717)
Q Consensus 578 ~~~~~~~-------------------------~~~~~~~~t~~y~aPE~~-~~~~~~~~~Dvws~G~il~el~tg 626 (717)
....... ......+||++|+|||++ ....++.++|||||||++|||++|
T Consensus 206 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~Y~aPE~~~~~~~~~~~~DiwSlG~il~elltg 280 (458)
T 3rp9_A 206 VDYPENGNSQLPISPREDDMNLVTFPHTKNLKRQLTGHVVTRWYRAPELILLQENYTEAIDVWSIGCIFAELLNM 280 (458)
T ss_dssp TTSCTTCCCCCC---------------------------CCCTTCCHHHHTTCCCCCTHHHHHHHHHHHHHHHTT
T ss_pred ccCccccccccccCccccccccccccccccccccccCCcccccccChHHhhCCCCCCcHhHHHHHHHHHHHHHHh
Confidence 6432211 122345789999999975 567799999999999999999993
No 176
>2qr7_A Ribosomal protein S6 kinase alpha-3; kinase domain, RSK2, autoinhibitory, ATP-binding, nucleotide phosphorylation, serine/threonine-protein kinase; 2.00A {Mus musculus} PDB: 2qr8_A 4d9t_A* 4d9u_A* 3rny_A 2wnt_A
Probab=100.00 E-value=1e-39 Score=341.98 Aligned_cols=251 Identities=22% Similarity=0.310 Sum_probs=200.1
Q ss_pred HhccCCccccccccccEEEEEEEec-CCCeEEEEEechhhHHHHHHHHHHHHHHHhc-CCCceeeEeeeeecCCeeEEEE
Q 005040 425 ATDEFNECNLLGTGGFGSVYKGTLS-DGTNVAIKIFNLQLERAFRSFDSECEILRNV-RHRNLLKILGSCSNLDFKALVL 502 (717)
Q Consensus 425 ~~~~~~~~~~lg~G~~g~V~~~~~~-~~~~vavK~~~~~~~~~~~~~~~e~~~l~~l-~hpniv~~~~~~~~~~~~~lv~ 502 (717)
..++|++.+.||+|+||.||+|..+ +++.||+|++..... ...+|++++.++ +||||+++++++.+.+..|+||
T Consensus 20 ~~~~y~~~~~lG~G~~g~V~~~~~~~~~~~~avK~~~~~~~----~~~~E~~~l~~~~~hp~iv~~~~~~~~~~~~~lv~ 95 (342)
T 2qr7_A 20 FTDGYEVKEDIGVGSYSVCKRCIHKATNMEFAVKIIDKSKR----DPTEEIEILLRYGQHPNIITLKDVYDDGKYVYVVT 95 (342)
T ss_dssp HHHHEEEEEEEEECSSEEEEEEEETTTTEEEEEEEEETTTC----CCHHHHHHHHHHTTSTTBCCEEEEEECSSEEEEEE
T ss_pred ccccEEEEEEEeeCCCEEEEEEEECCCCCEEEEEEEEcccC----ChHHHHHHHHHhcCCCCcCeEEEEEEcCCEEEEEE
Confidence 3578999999999999999999976 789999999975532 234588888888 7999999999999999999999
Q ss_pred EccCCCCHHHHHhhCCCCCCHHHHHHHHHHHHHHHHHHhhcCCCCCeEecCCCCCCeeeCCC----CcEEEeeecccccc
Q 005040 503 EFMPNGSLEKWLYSHNYFLDILQRLNIMIDVGSALEYLHHCHSSAPIIHCDLKPTNILLDEN----MVAHVSDFGISKLL 578 (717)
Q Consensus 503 e~~~~g~L~~~l~~~~~~~~~~~~~~i~~~i~~~l~~LH~~~~~~~ivH~dlk~~Nill~~~----~~~kl~Dfgl~~~~ 578 (717)
||+++|+|.+++...+ .+++..+..++.|++.||.||| +.+|+||||||+||++..+ +.+||+|||++...
T Consensus 96 E~~~gg~L~~~i~~~~-~~~~~~~~~~~~qi~~al~~lH----~~givHrDlkp~NIl~~~~~~~~~~~kl~Dfg~a~~~ 170 (342)
T 2qr7_A 96 ELMKGGELLDKILRQK-FFSEREASAVLFTITKTVEYLH----AQGVVHRDLKPSNILYVDESGNPESIRICDFGFAKQL 170 (342)
T ss_dssp CCCCSCBHHHHHHTCT-TCCHHHHHHHHHHHHHHHHHHH----HTTEECSCCCGGGEEESSSSCSGGGEEECCCTTCEEC
T ss_pred eCCCCCcHHHHHHHcC-CCCHHHHHHHHHHHHHHHHHHH----HCCcEeccCCHHHEEEecCCCCcCeEEEEECCCcccC
Confidence 9999999999998654 4899999999999999999999 6789999999999998533 35999999999876
Q ss_pred CCCCCceeeeccccCccccCCCccCCCCcCcccchhhHHHHHHHHHhCCCCCCccccCc-chHHHHHHhhCCCchhhhcc
Q 005040 579 GEGEDSVIQTMTMATIGYMAPEYGSEGIVSTKCDVYSYGVLLMETFTEKKPTDEMFTGE-MSLRRWVKESLPHRLTEVVD 657 (717)
Q Consensus 579 ~~~~~~~~~~~~~~t~~y~aPE~~~~~~~~~~~Dvws~G~il~el~tg~~p~~~~~~~~-~~~~~~~~~~~~~~~~~~~~ 657 (717)
..... .....+||+.|+|||++.+..++.++||||+||++|||++|+.||....... ..+...+......
T Consensus 171 ~~~~~--~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~ell~g~~Pf~~~~~~~~~~~~~~i~~~~~~------- 241 (342)
T 2qr7_A 171 RAENG--LLMTPCYTANFVAPEVLERQGYDAACDIWSLGVLLYTMLTGYTPFANGPDDTPEEILARIGSGKFS------- 241 (342)
T ss_dssp BCTTC--CBCCSSCCSSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCSSCSSTTSCHHHHHHHHHHCCCC-------
T ss_pred cCCCC--ceeccCCCccccCHHHhcCCCCCCccCeeeHhHHHHHHhcCCCCCCCCCcCCHHHHHHHHccCCcc-------
Confidence 54322 2234578999999999988889999999999999999999999997532111 1111111110000
Q ss_pred ccchhhhhhhhhhHHHHHHHHHHHhhccCCCCCCCCCHHHHHH
Q 005040 658 ANLVREEQAFSDKMDCLFSIMDLALDCCMDTPHKRIHMTDAAA 700 (717)
Q Consensus 658 ~~~~~~~~~~~~~~~~~~~l~~li~~cl~~~P~~Rpt~~ev~~ 700 (717)
+.. .....++.++.+++.+||..||++|||+.|+++
T Consensus 242 --~~~-----~~~~~~s~~~~~li~~~L~~dP~~R~t~~~il~ 277 (342)
T 2qr7_A 242 --LSG-----GYWNSVSDTAKDLVSKMLHVDPHQRLTAALVLR 277 (342)
T ss_dssp --CCS-----TTTTTSCHHHHHHHHHHTCSSTTTSCCHHHHTT
T ss_pred --cCc-----cccccCCHHHHHHHHHHCCCChhHCcCHHHHhc
Confidence 000 001134566889999999999999999999876
No 177
>1cm8_A Phosphorylated MAP kinase P38-gamma; phosphorylation, transferase; HET: TPO PTR ANP; 2.40A {Homo sapiens} SCOP: d.144.1.7
Probab=100.00 E-value=2.4e-39 Score=342.97 Aligned_cols=262 Identities=23% Similarity=0.282 Sum_probs=195.3
Q ss_pred hccCCccccccccccEEEEEEEec-CCCeEEEEEechhh--HHHHHHHHHHHHHHHhcCCCceeeEeeeeecCC------
Q 005040 426 TDEFNECNLLGTGGFGSVYKGTLS-DGTNVAIKIFNLQL--ERAFRSFDSECEILRNVRHRNLLKILGSCSNLD------ 496 (717)
Q Consensus 426 ~~~~~~~~~lg~G~~g~V~~~~~~-~~~~vavK~~~~~~--~~~~~~~~~e~~~l~~l~hpniv~~~~~~~~~~------ 496 (717)
.++|+..+.||+|+||.||+|... +|+.||||++.... ....+.+.+|+++++.++||||+++++++....
T Consensus 24 ~~~y~~~~~lG~G~~g~V~~a~~~~~~~~vaiK~~~~~~~~~~~~~~~~~E~~~l~~l~hpnIv~l~~~~~~~~~~~~~~ 103 (367)
T 1cm8_A 24 RAVYRDLQPVGSGAYGAVCSAVDGRTGAKVAIKKLYRPFQSELFAKRAYRELRLLKHMRHENVIGLLDVFTPDETLDDFT 103 (367)
T ss_dssp BSSEEEEEEC------CEEEEEETTTCCEEEEEECSSTTSSHHHHHHHHHHHHHHHHCCBTTBCCCSEEECSCSSTTTCC
T ss_pred cceEEEeEEeeecCCeEEEEEEECCCCCEEEEEEeCccccCHHHHHHHHHHHHHHHhCCCcCCCCceeeEecCCccccCc
Confidence 367999999999999999999975 79999999985432 334567889999999999999999999987653
Q ss_pred eeEEEEEccCCCCHHHHHhhCCCCCCHHHHHHHHHHHHHHHHHHhhcCCCCCeEecCCCCCCeeeCCCCcEEEeeecccc
Q 005040 497 FKALVLEFMPNGSLEKWLYSHNYFLDILQRLNIMIDVGSALEYLHHCHSSAPIIHCDLKPTNILLDENMVAHVSDFGISK 576 (717)
Q Consensus 497 ~~~lv~e~~~~g~L~~~l~~~~~~~~~~~~~~i~~~i~~~l~~LH~~~~~~~ivH~dlk~~Nill~~~~~~kl~Dfgl~~ 576 (717)
..|+||||+ +++|.+++... .+++..+..++.|+++||+||| +.+|+||||||+||+++.++.+||+|||+++
T Consensus 104 ~~~lv~e~~-~~~L~~~~~~~--~l~~~~~~~~~~qi~~~L~~LH----~~~ivH~Dlkp~NIll~~~~~~kl~Dfg~a~ 176 (367)
T 1cm8_A 104 DFYLVMPFM-GTDLGKLMKHE--KLGEDRIQFLVYQMLKGLRYIH----AAGIIHRDLKPGNLAVNEDCELKILDFGLAR 176 (367)
T ss_dssp CCEEEEECC-SEEHHHHHHHC--CCCHHHHHHHHHHHHHHHHHHH----HTTEECCCCCGGGEEECTTCCEEECCCTTCE
T ss_pred eEEEEEecC-CCCHHHHHhcC--CCCHHHHHHHHHHHHHHHHHHH----HCCccccCcCHHHEEEcCCCCEEEEeeeccc
Confidence 459999999 78999999874 3899999999999999999999 6789999999999999999999999999998
Q ss_pred ccCCCCCceeeeccccCccccCCCccCC-CCcCcccchhhHHHHHHHHHhCCCCCCccccCcchHHHHHHhhCCC--chh
Q 005040 577 LLGEGEDSVIQTMTMATIGYMAPEYGSE-GIVSTKCDVYSYGVLLMETFTEKKPTDEMFTGEMSLRRWVKESLPH--RLT 653 (717)
Q Consensus 577 ~~~~~~~~~~~~~~~~t~~y~aPE~~~~-~~~~~~~Dvws~G~il~el~tg~~p~~~~~~~~~~~~~~~~~~~~~--~~~ 653 (717)
..... .....+|+.|+|||++.+ ..++.++||||+||++|||++|+.||.+.... ..+.......... ...
T Consensus 177 ~~~~~-----~~~~~~t~~y~aPE~~~~~~~~~~~~DiwslG~il~ell~g~~pf~~~~~~-~~l~~i~~~~g~~~~~~~ 250 (367)
T 1cm8_A 177 QADSE-----MTGYVVTRWYRAPEVILNWMRYTQTVDIWSVGCIMAEMITGKTLFKGSDHL-DQLKEIMKVTGTPPAEFV 250 (367)
T ss_dssp ECCSS-----CCSSCSCGGGCCTHHHHTTTCCCTTHHHHHHHHHHHHHHHSSCSSCCSSHH-HHHHHHHHHHCCCCHHHH
T ss_pred ccccc-----cCcCcCCCCcCCHHHHhCCCCCChhhhHHHHHHHHHHHHhCCCCCCCCCHH-HHHHHHHHhcCCCCHHHH
Confidence 76432 234468999999998766 77999999999999999999999999763221 1111111111110 000
Q ss_pred hhcccc--------chhh-hhhh-hhhHHHHHHHHHHHhhccCCCCCCCCCHHHHHH
Q 005040 654 EVVDAN--------LVRE-EQAF-SDKMDCLFSIMDLALDCCMDTPHKRIHMTDAAA 700 (717)
Q Consensus 654 ~~~~~~--------~~~~-~~~~-~~~~~~~~~l~~li~~cl~~~P~~Rpt~~ev~~ 700 (717)
..+... +... ...+ .....++.++.+++.+||..||++|||+.|+++
T Consensus 251 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~mL~~dP~~R~t~~e~l~ 307 (367)
T 1cm8_A 251 QRLQSDEAKNYMKGLPELEKKDFASILTNASPLAVNLLEKMLVLDAEQRVTAGEALA 307 (367)
T ss_dssp HTCSCHHHHHHHHHSCCCCCCCGGGTCTTCCHHHHHHHHHHSCSSTTTSCCHHHHHH
T ss_pred HHhhhHHHHHHHHhCCCCCCCCHHHHCCCCCHHHHHHHHHHccCChhHCCCHHHHhc
Confidence 000000 0000 0000 001234567899999999999999999999987
No 178
>2jam_A Calcium/calmodulin-dependent protein kinase type 1G; transferase, kinase, membrane, ATP-binding, prenylation, serine/threonine-protein kinase, alternative splicing; HET: J60; 1.7A {Homo sapiens} PDB: 2jc6_A* 1a06_A
Probab=100.00 E-value=2.6e-39 Score=334.48 Aligned_cols=251 Identities=25% Similarity=0.325 Sum_probs=202.7
Q ss_pred HhccCCccccccccccEEEEEEEec-CCCeEEEEEechhhHHHHHHHHHHHHHHHhcCCCceeeEeeeeecCCeeEEEEE
Q 005040 425 ATDEFNECNLLGTGGFGSVYKGTLS-DGTNVAIKIFNLQLERAFRSFDSECEILRNVRHRNLLKILGSCSNLDFKALVLE 503 (717)
Q Consensus 425 ~~~~~~~~~~lg~G~~g~V~~~~~~-~~~~vavK~~~~~~~~~~~~~~~e~~~l~~l~hpniv~~~~~~~~~~~~~lv~e 503 (717)
..++|.+.+.||+|+||.||+|+.. +|+.||+|++........+.+.+|++++++++||||+++++++.+.+..++|||
T Consensus 7 ~~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~lv~e 86 (304)
T 2jam_A 7 IRKTFIFMEVLGSGAFSEVFLVKQRLTGKLFALKCIKKSPAFRDSSLENEIAVLKKIKHENIVTLEDIYESTTHYYLVMQ 86 (304)
T ss_dssp HHHHEEEEEEEEECSSEEEEEEEETTTCCEEEEEEEECC------HHHHHHHHHHHCCCTTBCCEEEEEECSSEEEEEEC
T ss_pred hhccceeeeeccCCCCceEEEEEECCCCCEEEEEEEecccccchHHHHHHHHHHHhCCCCCeeehhhhcccCCEEEEEEE
Confidence 3478999999999999999999976 799999999976544445678899999999999999999999999999999999
Q ss_pred ccCCCCHHHHHhhCCCCCCHHHHHHHHHHHHHHHHHHhhcCCCCCeEecCCCCCCeee---CCCCcEEEeeeccccccCC
Q 005040 504 FMPNGSLEKWLYSHNYFLDILQRLNIMIDVGSALEYLHHCHSSAPIIHCDLKPTNILL---DENMVAHVSDFGISKLLGE 580 (717)
Q Consensus 504 ~~~~g~L~~~l~~~~~~~~~~~~~~i~~~i~~~l~~LH~~~~~~~ivH~dlk~~Nill---~~~~~~kl~Dfgl~~~~~~ 580 (717)
|+++++|.+++...+ .+++..+..++.|++.||.||| +.+|+||||||+||++ +.++.+||+|||++.....
T Consensus 87 ~~~~~~L~~~l~~~~-~~~~~~~~~~~~qi~~~l~~lH----~~~i~H~dikp~NIl~~~~~~~~~~kl~Dfg~~~~~~~ 161 (304)
T 2jam_A 87 LVSGGELFDRILERG-VYTEKDASLVIQQVLSAVKYLH----ENGIVHRDLKPENLLYLTPEENSKIMITDFGLSKMEQN 161 (304)
T ss_dssp CCCSCBHHHHHHHHS-CCCHHHHHHHHHHHHHHHHHHH----HTTCCCCSCCGGGCEESSSSTTCCEEBCSCSTTCCCCC
T ss_pred cCCCccHHHHHHHcC-CCCHHHHHHHHHHHHHHHHHHH----HCCccccCCCHHHEEEecCCCCCCEEEccCCcceecCC
Confidence 999999999997654 4899999999999999999999 6789999999999999 7889999999999876432
Q ss_pred CCCceeeeccccCccccCCCccCCCCcCcccchhhHHHHHHHHHhCCCCCCccccCcchHHHHHHhhCCCchhhhccccc
Q 005040 581 GEDSVIQTMTMATIGYMAPEYGSEGIVSTKCDVYSYGVLLMETFTEKKPTDEMFTGEMSLRRWVKESLPHRLTEVVDANL 660 (717)
Q Consensus 581 ~~~~~~~~~~~~t~~y~aPE~~~~~~~~~~~Dvws~G~il~el~tg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 660 (717)
.. .....||+.|+|||++.+..++.++||||+|+++|||++|+.||..... ......+...... . ..
T Consensus 162 ~~----~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~g~~pf~~~~~--~~~~~~i~~~~~~-~----~~-- 228 (304)
T 2jam_A 162 GI----MSTACGTPGYVAPEVLAQKPYSKAVDCWSIGVITYILLCGYPPFYEETE--SKLFEKIKEGYYE-F----ES-- 228 (304)
T ss_dssp BT----THHHHSCCCBCCTTTBSSCSCCHHHHHHHHHHHHHHHHHSSCTTTTSCH--HHHHHHHHHCCCC-C----CT--
T ss_pred Cc----cccccCCCCccChHHhccCCCCchhhHHHHHHHHHHHHHCCCCCCCCCH--HHHHHHHHcCCCC-C----Cc--
Confidence 21 2334689999999999999999999999999999999999999975321 1111111111000 0 00
Q ss_pred hhhhhhhhhhHHHHHHHHHHHhhccCCCCCCCCCHHHHHH
Q 005040 661 VREEQAFSDKMDCLFSIMDLALDCCMDTPHKRIHMTDAAA 700 (717)
Q Consensus 661 ~~~~~~~~~~~~~~~~l~~li~~cl~~~P~~Rpt~~ev~~ 700 (717)
+....++.++.+++.+||+.||++|||+.|+++
T Consensus 229 -------~~~~~~~~~~~~li~~~l~~dp~~Rps~~~~l~ 261 (304)
T 2jam_A 229 -------PFWDDISESAKDFICHLLEKDPNERYTCEKALS 261 (304)
T ss_dssp -------TTTTTSCHHHHHHHHHHHCSSTTTSCCHHHHHT
T ss_pred -------cccccCCHHHHHHHHHHcCCChhHCcCHHHHhc
Confidence 011134466889999999999999999999986
No 179
>3gbz_A Kinase, CMGC CDK; ssgcid, ATP-binding, nucleotide-binding, serine/threonine-protein kinase, transferase; 1.85A {Giardia lamblia} PDB: 3gc0_A*
Probab=100.00 E-value=4e-40 Score=344.32 Aligned_cols=268 Identities=22% Similarity=0.281 Sum_probs=195.6
Q ss_pred HHhccCCccccccccccEEEEEEEec-CCCeEEEEEechhh--HHHHHHHHHHHHHHHhcCCCceeeEeeeeecCCeeEE
Q 005040 424 RATDEFNECNLLGTGGFGSVYKGTLS-DGTNVAIKIFNLQL--ERAFRSFDSECEILRNVRHRNLLKILGSCSNLDFKAL 500 (717)
Q Consensus 424 ~~~~~~~~~~~lg~G~~g~V~~~~~~-~~~~vavK~~~~~~--~~~~~~~~~e~~~l~~l~hpniv~~~~~~~~~~~~~l 500 (717)
...++|++.+.||+|+||+||+|... +++.||||++.... ....+.+.+|++++++++||||+++++++.+.+..++
T Consensus 31 ~~~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~l 110 (329)
T 3gbz_A 31 TSIDRYRRITKLGEGTYGEVYKAIDTVTNETVAIKRIRLEHEEEGVPGTAIREVSLLKELQHRNIIELKSVIHHNHRLHL 110 (329)
T ss_dssp -CGGGEEEEEEEEECSSSEEEEEEETTTTEEEEEEECCCCC--------CHHHHHHGGGCCCTTBCCEEEEEEETTEEEE
T ss_pred cchhhEEEEEEEEecCCeEEEEEEECCCCceEEEEEEcccccccccchhHHHHHHHHHHcCCCCcceEEEEEecCCEEEE
Confidence 34578999999999999999999865 78999999996443 2234567789999999999999999999999999999
Q ss_pred EEEccCCCCHHHHHhhCCCCCCHHHHHHHHHHHHHHHHHHhhcCCCCCeEecCCCCCCeee-----CCCCcEEEeeeccc
Q 005040 501 VLEFMPNGSLEKWLYSHNYFLDILQRLNIMIDVGSALEYLHHCHSSAPIIHCDLKPTNILL-----DENMVAHVSDFGIS 575 (717)
Q Consensus 501 v~e~~~~g~L~~~l~~~~~~~~~~~~~~i~~~i~~~l~~LH~~~~~~~ivH~dlk~~Nill-----~~~~~~kl~Dfgl~ 575 (717)
||||++ |+|.+++..... +++..+..++.|++.||.||| +.+|+||||||+||++ +.++.+||+|||++
T Consensus 111 v~e~~~-~~L~~~~~~~~~-~~~~~~~~i~~ql~~~l~~LH----~~~ivH~Dlkp~NIll~~~~~~~~~~~kl~Dfg~a 184 (329)
T 3gbz_A 111 IFEYAE-NDLKKYMDKNPD-VSMRVIKSFLYQLINGVNFCH----SRRCLHRDLKPQNLLLSVSDASETPVLKIGDFGLA 184 (329)
T ss_dssp EEECCS-EEHHHHHHHCTT-CCHHHHHHHHHHHHHHHHHHH----HTTCCCSCCCGGGEEEEC-----CCEEEECCTTHH
T ss_pred EEecCC-CCHHHHHhhcCC-CCHHHHHHHHHHHHHHHHHHH----hCCEECCCCCHHHEEEecCCCCccceEEECcCCCc
Confidence 999997 599999987654 899999999999999999999 6789999999999999 45556999999999
Q ss_pred cccCCCCCceeeeccccCccccCCCccCCC-CcCcccchhhHHHHHHHHHhCCCCCCccccCcchHHHHHHhh-CCCc--
Q 005040 576 KLLGEGEDSVIQTMTMATIGYMAPEYGSEG-IVSTKCDVYSYGVLLMETFTEKKPTDEMFTGEMSLRRWVKES-LPHR-- 651 (717)
Q Consensus 576 ~~~~~~~~~~~~~~~~~t~~y~aPE~~~~~-~~~~~~Dvws~G~il~el~tg~~p~~~~~~~~~~~~~~~~~~-~~~~-- 651 (717)
........ ......+|+.|+|||++.+. .++.++||||+||++|||++|+.||......+ .+....... .+..
T Consensus 185 ~~~~~~~~--~~~~~~~t~~y~aPE~~~~~~~~~~~~DiwslG~il~ell~g~~pf~~~~~~~-~~~~~~~~~~~~~~~~ 261 (329)
T 3gbz_A 185 RAFGIPIR--QFTHEIITLWYRPPEILLGSRHYSTSVDIWSIACIWAEMLMKTPLFPGDSEID-QLFKIFEVLGLPDDTT 261 (329)
T ss_dssp HHHC-------------CCTTCCHHHHTTCCCCCTHHHHHHHHHHHHHHHHSSCSSCCSSHHH-HHHHHHHHHCCCCTTT
T ss_pred cccCCccc--ccCCCcCCccccCHHHhcCCCCCCcHHHHHHHHHHHHHHHHCCCCcCCCCHHH-HHHHHHHHhCCCchhh
Confidence 87653322 22344679999999988764 58999999999999999999999997632211 122221111 1110
Q ss_pred hhhhcc--------ccchhhhhhhhhhHHHHHHHHHHHhhccCCCCCCCCCHHHHHH
Q 005040 652 LTEVVD--------ANLVREEQAFSDKMDCLFSIMDLALDCCMDTPHKRIHMTDAAA 700 (717)
Q Consensus 652 ~~~~~~--------~~~~~~~~~~~~~~~~~~~l~~li~~cl~~~P~~Rpt~~ev~~ 700 (717)
+..... +..............++.++.+++.+||+.||++|||++|+++
T Consensus 262 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~R~t~~e~l~ 318 (329)
T 3gbz_A 262 WPGVTALPDWKQSFPKFRGKTLKRVLGALLDDEGLDLLTAMLEMDPVKRISAKNALE 318 (329)
T ss_dssp STTGGGSTTCCTTCCCCCCCCHHHHHGGGSCHHHHHHHHHHTCSSGGGSCCHHHHHT
T ss_pred hhhhhhhhhhhhhhhhhccccHhhhcccccCHHHHHHHHHHccCChhhCCCHHHHhC
Confidence 000000 0000000000011124567889999999999999999999975
No 180
>3bhy_A Death-associated protein kinase 3; death associated kinase, DAPK3, ZIP kinase, ZIPK, DAP kinase like kinase, DLK, structural genomics consortium; HET: 7CP; 1.24A {Homo sapiens} PDB: 3bqr_A* 2j90_A* 1yrp_A* 2yak_A* 2y4p_A* 3f5u_A* 1jks_A 1jkk_A* 1ig1_A* 1jkl_A 1jkt_A 3eh9_A* 3eha_A* 3f5g_A* 1p4f_A* 1wvw_A 1wvx_A* 1wvy_A* 2w4j_A* 3dgk_A ...
Probab=100.00 E-value=3.7e-39 Score=329.73 Aligned_cols=259 Identities=22% Similarity=0.297 Sum_probs=206.3
Q ss_pred hccCCccccccccccEEEEEEEec-CCCeEEEEEechhhH------HHHHHHHHHHHHHHhcCCCceeeEeeeeecCCee
Q 005040 426 TDEFNECNLLGTGGFGSVYKGTLS-DGTNVAIKIFNLQLE------RAFRSFDSECEILRNVRHRNLLKILGSCSNLDFK 498 (717)
Q Consensus 426 ~~~~~~~~~lg~G~~g~V~~~~~~-~~~~vavK~~~~~~~------~~~~~~~~e~~~l~~l~hpniv~~~~~~~~~~~~ 498 (717)
.++|++.+.||+|+||.||+|... +++.||+|++..... ...+.+.+|++++++++||||+++++++.+....
T Consensus 4 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~~avK~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~~~~~ 83 (283)
T 3bhy_A 4 EDHYEMGEELGSGQFAIVRKCRQKGTGKEYAAKFIKKRRLSSSRRGVSREEIEREVNILREIRHPNIITLHDIFENKTDV 83 (283)
T ss_dssp HHHEEEEEEEEECSSEEEEEEEETTTCCEEEEEEEEBCSSTTCSSSBCHHHHHHHHHHHHHCCCTTBCCEEEEEECSSEE
T ss_pred hhhhhhHHhhcccCceEEEEEEEcCCCCeeehHHhhhccccccccchHHHHHHHHHHHHHhCCCCCeeehhheecCCCeE
Confidence 367999999999999999999986 799999999865421 1356788999999999999999999999999999
Q ss_pred EEEEEccCCCCHHHHHhhCCCCCCHHHHHHHHHHHHHHHHHHhhcCCCCCeEecCCCCCCeeeCCCC----cEEEeeecc
Q 005040 499 ALVLEFMPNGSLEKWLYSHNYFLDILQRLNIMIDVGSALEYLHHCHSSAPIIHCDLKPTNILLDENM----VAHVSDFGI 574 (717)
Q Consensus 499 ~lv~e~~~~g~L~~~l~~~~~~~~~~~~~~i~~~i~~~l~~LH~~~~~~~ivH~dlk~~Nill~~~~----~~kl~Dfgl 574 (717)
++||||+++++|.+++.... .+++..+..++.|++.||.||| +.+|+||||||+||+++.++ .+||+|||+
T Consensus 84 ~lv~e~~~~~~L~~~l~~~~-~~~~~~~~~~~~~i~~~l~~lH----~~~i~H~dl~p~Nil~~~~~~~~~~~kl~dfg~ 158 (283)
T 3bhy_A 84 VLILELVSGGELFDFLAEKE-SLTEDEATQFLKQILDGVHYLH----SKRIAHFDLKPENIMLLDKNVPNPRIKLIDFGI 158 (283)
T ss_dssp EEEEECCCSCBHHHHHHHHS-SCCHHHHHHHHHHHHHHHHHHH----HTTEECSCCSGGGEEESCSSSSSCCEEECCCTT
T ss_pred EEEEeecCCCcHHHHHHhcC-CCCHHHHHHHHHHHHHHHHHHH----hCCccCCCCChHHEEEecCCCCCCceEEEeccc
Confidence 99999999999999997643 4899999999999999999999 67899999999999999877 899999999
Q ss_pred ccccCCCCCceeeeccccCccccCCCccCCCCcCcccchhhHHHHHHHHHhCCCCCCccccCcchHHHHHHhhCCCchhh
Q 005040 575 SKLLGEGEDSVIQTMTMATIGYMAPEYGSEGIVSTKCDVYSYGVLLMETFTEKKPTDEMFTGEMSLRRWVKESLPHRLTE 654 (717)
Q Consensus 575 ~~~~~~~~~~~~~~~~~~t~~y~aPE~~~~~~~~~~~Dvws~G~il~el~tg~~p~~~~~~~~~~~~~~~~~~~~~~~~~ 654 (717)
+........ .....+|+.|+|||++.+..++.++||||||+++|||++|+.||...... .....+..... .
T Consensus 159 ~~~~~~~~~---~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~g~~p~~~~~~~--~~~~~~~~~~~-~--- 229 (283)
T 3bhy_A 159 AHKIEAGNE---FKNIFGTPEFVAPEIVNYEPLGLEADMWSIGVITYILLSGASPFLGETKQ--ETLTNISAVNY-D--- 229 (283)
T ss_dssp CEECC-----------CCCGGGCCHHHHTTCCCCTHHHHHHHHHHHHHHHHSSCTTCCSSHH--HHHHHHHTTCC-C---
T ss_pred ceeccCCCc---ccccCCCcCccCcceecCCCCCcchhhhhHHHHHHHHHHCCCCCCCcchH--HHHHHhHhccc-C---
Confidence 987643321 23346899999999999999999999999999999999999999763211 11111110000 0
Q ss_pred hccccchhhhhhhhhhHHHHHHHHHHHhhccCCCCCCCCCHHHHHH--HHHHhHHh
Q 005040 655 VVDANLVREEQAFSDKMDCLFSIMDLALDCCMDTPHKRIHMTDAAA--KLRKIKAK 708 (717)
Q Consensus 655 ~~~~~~~~~~~~~~~~~~~~~~l~~li~~cl~~~P~~Rpt~~ev~~--~L~~~~~~ 708 (717)
... .....++..+.+++.+||+.||++|||+.|+++ .+++++++
T Consensus 230 -----~~~-----~~~~~~~~~~~~li~~~l~~dp~~Rps~~~~l~h~~~~~~~~~ 275 (283)
T 3bhy_A 230 -----FDE-----EYFSNTSELAKDFIRRLLVKDPKRRMTIAQSLEHSWIKAIRRR 275 (283)
T ss_dssp -----CCH-----HHHTTCCHHHHHHHHTTSCSSGGGSCCHHHHHHCHHHHHHHHC
T ss_pred -----Ccc-----hhcccCCHHHHHHHHHHccCCHhHCcCHHHHHhCHHHHHHHHH
Confidence 000 011234566889999999999999999999997 46665443
No 181
>1byg_A CSK, protein (C-terminal SRC kinase); protein kinase, phosphorylation, staurosporine, transferase; HET: STU; 2.40A {Homo sapiens} SCOP: d.144.1.7 PDB: 3d7u_A 3d7t_A*
Probab=100.00 E-value=6e-40 Score=334.65 Aligned_cols=253 Identities=28% Similarity=0.423 Sum_probs=200.2
Q ss_pred hccCCccccccccccEEEEEEEecCCCeEEEEEechhhHHHHHHHHHHHHHHHhcCCCceeeEeeeeec-CCeeEEEEEc
Q 005040 426 TDEFNECNLLGTGGFGSVYKGTLSDGTNVAIKIFNLQLERAFRSFDSECEILRNVRHRNLLKILGSCSN-LDFKALVLEF 504 (717)
Q Consensus 426 ~~~~~~~~~lg~G~~g~V~~~~~~~~~~vavK~~~~~~~~~~~~~~~e~~~l~~l~hpniv~~~~~~~~-~~~~~lv~e~ 504 (717)
.++|++.+.||+|+||.||+|+. .|+.||||++.... ..+.+.+|++++++++||||+++++++.+ .+..++||||
T Consensus 20 ~~~y~~~~~lg~G~~g~V~~~~~-~~~~vavK~~~~~~--~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~~lv~e~ 96 (278)
T 1byg_A 20 MKELKLLQTIGKGEFGDVMLGDY-RGNKVAVKCIKNDA--TAQAFLAEASVMTQLRHSNLVQLLGVIVEEKGGLYIVTEY 96 (278)
T ss_dssp GGGEEEEEEEEECSSCEEEEEEE-TTEEEEEEECCCCC----HHHHHTHHHHTTCCCTTBCCEEEEECCC--CCEEEECC
T ss_pred hhhceEEeEEecCCCceEEEEEE-cCCEEEEEEecchh--HHHHHHHHHHHHHhCCCCCEeeEEEEEEcCCCceEEEEec
Confidence 46899999999999999999988 48899999987543 34678899999999999999999998654 4578999999
Q ss_pred cCCCCHHHHHhhCC-CCCCHHHHHHHHHHHHHHHHHHhhcCCCCCeEecCCCCCCeeeCCCCcEEEeeeccccccCCCCC
Q 005040 505 MPNGSLEKWLYSHN-YFLDILQRLNIMIDVGSALEYLHHCHSSAPIIHCDLKPTNILLDENMVAHVSDFGISKLLGEGED 583 (717)
Q Consensus 505 ~~~g~L~~~l~~~~-~~~~~~~~~~i~~~i~~~l~~LH~~~~~~~ivH~dlk~~Nill~~~~~~kl~Dfgl~~~~~~~~~ 583 (717)
+++|+|.+++.... ..+++..+..++.|+++||+||| +.+|+||||||+||+++.++.+||+|||++.......
T Consensus 97 ~~~~~L~~~l~~~~~~~~~~~~~~~~~~~i~~~l~~lH----~~~i~H~dlkp~Nil~~~~~~~~l~Dfg~~~~~~~~~- 171 (278)
T 1byg_A 97 MAKGSLVDYLRSRGRSVLGGDCLLKFSLDVCEAMEYLE----GNNFVHRDLAARNVLVSEDNVAKVSDFGLTKEASSTQ- 171 (278)
T ss_dssp CTTEEHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHH----HTTCCCSCCSGGGEEECTTSCEEECCCCC---------
T ss_pred CCCCCHHHHHHhcccccCCHHHHHHHHHHHHHHHHHHH----hCCccccCCCcceEEEeCCCcEEEeeccccccccccc-
Confidence 99999999998643 23789999999999999999999 6789999999999999999999999999988654321
Q ss_pred ceeeeccccCccccCCCccCCCCcCcccchhhHHHHHHHHHh-CCCCCCccccCcchHHHHHHhhCCCchhhhccccchh
Q 005040 584 SVIQTMTMATIGYMAPEYGSEGIVSTKCDVYSYGVLLMETFT-EKKPTDEMFTGEMSLRRWVKESLPHRLTEVVDANLVR 662 (717)
Q Consensus 584 ~~~~~~~~~t~~y~aPE~~~~~~~~~~~Dvws~G~il~el~t-g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 662 (717)
....+++.|+|||.+.+..++.++||||||+++|||++ |+.||...... .....+.....
T Consensus 172 ----~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~l~t~g~~p~~~~~~~--~~~~~~~~~~~------------- 232 (278)
T 1byg_A 172 ----DTGKLPVKWTAPEALREKKFSTKSDVWSFGILLWEIYSFGRVPYPRIPLK--DVVPRVEKGYK------------- 232 (278)
T ss_dssp --------CCTTTSCHHHHHHCCCCHHHHHHHHHHHHHHHHTTSCCSCTTSCGG--GHHHHHTTTCC-------------
T ss_pred ----cCCCccccccCHHHhCCCCCCchhcHHHHHHHHHHHHhCCCCCCCCCCHH--HHHHHHhcCCC-------------
Confidence 22357889999999988889999999999999999998 99999763221 11111111100
Q ss_pred hhhhhhhhHHHHHHHHHHHhhccCCCCCCCCCHHHHHHHHHHhHHhh
Q 005040 663 EEQAFSDKMDCLFSIMDLALDCCMDTPHKRIHMTDAAAKLRKIKAKF 709 (717)
Q Consensus 663 ~~~~~~~~~~~~~~l~~li~~cl~~~P~~Rpt~~ev~~~L~~~~~~~ 709 (717)
......++..+.+++.+||+.||++|||+.|+++.|+++....
T Consensus 233 ----~~~~~~~~~~l~~li~~~l~~~p~~Rps~~~l~~~L~~i~~~~ 275 (278)
T 1byg_A 233 ----MDAPDGCPPAVYEVMKNCWHLDAAMRPSFLQLREQLEHIKTHE 275 (278)
T ss_dssp ----CCCCTTCCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHHHHC
T ss_pred ----CCCcccCCHHHHHHHHHHhcCChhhCCCHHHHHHHHHHHHhhh
Confidence 0111234567889999999999999999999999999987653
No 182
>3eqc_A Dual specificity mitogen-activated protein kinase; MEK1 kinase, ATP-binding, disease mutation, nucleoti binding, phosphoprotein; HET: 3BM AGS; 1.80A {Homo sapiens} PDB: 3eqd_A* 3eqf_A* 3eqg_A* 3eqh_A* 3eqi_A* 2y4i_C* 3eqb_A* 2p55_A* 1s9j_A* 3dy7_A* 3e8n_A* 3v01_A* 3v04_A* 3dv3_A* 3mbl_A* 3pp1_A* 3orn_A* 3os3_A* 3sls_A* 1s9i_A* ...
Probab=100.00 E-value=4.4e-40 Score=348.85 Aligned_cols=264 Identities=22% Similarity=0.304 Sum_probs=205.2
Q ss_pred hccCCccccccccccEEEEEEEec-CCCeEEEEEechhh-HHHHHHHHHHHHHHHhcCCCceeeEeeeeecCCeeEEEEE
Q 005040 426 TDEFNECNLLGTGGFGSVYKGTLS-DGTNVAIKIFNLQL-ERAFRSFDSECEILRNVRHRNLLKILGSCSNLDFKALVLE 503 (717)
Q Consensus 426 ~~~~~~~~~lg~G~~g~V~~~~~~-~~~~vavK~~~~~~-~~~~~~~~~e~~~l~~l~hpniv~~~~~~~~~~~~~lv~e 503 (717)
.++|++.+.||+|+||.||+|... +++.||+|++.... ....+.+.+|++++++++||||+++++++.+.+..++|||
T Consensus 32 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~va~K~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~lv~e 111 (360)
T 3eqc_A 32 DDDFEKISELGAGNGGVVFKVSHKPSGLVMARKLIHLEIKPAIRNQIIRELQVLHECNSPYIVGFYGAFYSDGEISICME 111 (360)
T ss_dssp GGGEEEEEEEEECSSCEEEEEEETTTCCEEEEEEEECCCCHHHHHHHHHHHGGGGGCCCTTBCCEEEEEEETTEEEEEEC
T ss_pred cccceeeeeecCCCCeEEEEEEECCCCcEEEEEEeccccCHHHHHHHHHHHHHHHHCCCCCEEEEeEEEEECCEEEEEEE
Confidence 368999999999999999999976 78999999987553 3445678899999999999999999999999999999999
Q ss_pred ccCCCCHHHHHhhCCCCCCHHHHHHHHHHHHHHHHHHhhcCCCCCeEecCCCCCCeeeCCCCcEEEeeeccccccCCCCC
Q 005040 504 FMPNGSLEKWLYSHNYFLDILQRLNIMIDVGSALEYLHHCHSSAPIIHCDLKPTNILLDENMVAHVSDFGISKLLGEGED 583 (717)
Q Consensus 504 ~~~~g~L~~~l~~~~~~~~~~~~~~i~~~i~~~l~~LH~~~~~~~ivH~dlk~~Nill~~~~~~kl~Dfgl~~~~~~~~~ 583 (717)
|+++++|.+++.... .+++..+..++.|++.||.|||+ ..+|+||||||+||+++.++.+||+|||++......
T Consensus 112 ~~~~~~L~~~l~~~~-~~~~~~~~~i~~~i~~~l~~lh~---~~~i~H~dlkp~Nil~~~~~~~kl~Dfg~~~~~~~~-- 185 (360)
T 3eqc_A 112 HMDGGSLDQVLKKAG-RIPEQILGKVSIAVIKGLTYLRE---KHKIMHRDVKPSNILVNSRGEIKLCDFGVSGQLIDS-- 185 (360)
T ss_dssp CCTTCBHHHHHHHHS-SCCHHHHHHHHHHHHHHHHHHHH---HHCCCCSCCSGGGEEECTTCCEEECCCCCCHHHHHH--
T ss_pred CCCCCCHHHHHHHcC-CCCHHHHHHHHHHHHHHHHHHHH---hCCEEcCCccHHHEEECCCCCEEEEECCCCcccccc--
Confidence 999999999998654 38999999999999999999994 137999999999999999999999999999765321
Q ss_pred ceeeeccccCccccCCCccCCCCcCcccchhhHHHHHHHHHhCCCCCCccccCcchHHHHHHhh----------------
Q 005040 584 SVIQTMTMATIGYMAPEYGSEGIVSTKCDVYSYGVLLMETFTEKKPTDEMFTGEMSLRRWVKES---------------- 647 (717)
Q Consensus 584 ~~~~~~~~~t~~y~aPE~~~~~~~~~~~Dvws~G~il~el~tg~~p~~~~~~~~~~~~~~~~~~---------------- 647 (717)
......||+.|+|||++.+..++.++||||||+++|||++|+.||......+. .......
T Consensus 186 --~~~~~~gt~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~g~~pf~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~ 261 (360)
T 3eqc_A 186 --MANSFVGTRSYMSPERLQGTHYSVQSDIWSMGLSLVEMAVGRYPIPPPDAKEL--ELMFGCQVEGDAAETPPRPRTPG 261 (360)
T ss_dssp --C----CCCCTTCCHHHHTTCCCSHHHHHHHHHHHHHHHHHTSCCSSCCCHHHH--HHHHC------------------
T ss_pred --cccCCCCCCCeECHHHHcCCCCCchhhHHHHHHHHHHHHhCCCCCCCCCHHHH--HHHhcccccccCCCCCCCcccCC
Confidence 12334689999999999999999999999999999999999999975322111 0000000
Q ss_pred -----------CCCchhhhccccchhhhhhhhhhHHHHHHHHHHHhhccCCCCCCCCCHHHHHH
Q 005040 648 -----------LPHRLTEVVDANLVREEQAFSDKMDCLFSIMDLALDCCMDTPHKRIHMTDAAA 700 (717)
Q Consensus 648 -----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~cl~~~P~~Rpt~~ev~~ 700 (717)
.+....+..+........ ......++.++.+++.+||+.||++|||++|+++
T Consensus 262 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~li~~~L~~dP~~Rpt~~ell~ 324 (360)
T 3eqc_A 262 RPLNKFGMDSRPPMAIFELLDYIVNEPPP-KLPSGVFSLEFQDFVNKCLIKNPAERADLKQLMV 324 (360)
T ss_dssp ------------CCCHHHHHHHHHHSCCC-CCCTTTSCHHHHHHHHHHHCSSTTTSCCHHHHHT
T ss_pred CcccccccCCCCcccchhhhhHHhccCCC-CCCcccccHHHHHHHHHHhhcChhhCCCHHHHhh
Confidence 000001111111100000 0111234567899999999999999999999986
No 183
>4aaa_A Cyclin-dependent kinase-like 2; transferase, phospho-mimetic; HET: DKI; 1.53A {Homo sapiens} PDB: 4bbm_A*
Probab=100.00 E-value=7.7e-40 Score=342.66 Aligned_cols=267 Identities=25% Similarity=0.304 Sum_probs=200.5
Q ss_pred hccCCccccccccccEEEEEEEec-CCCeEEEEEechhh--HHHHHHHHHHHHHHHhcCCCceeeEeeeeecCCeeEEEE
Q 005040 426 TDEFNECNLLGTGGFGSVYKGTLS-DGTNVAIKIFNLQL--ERAFRSFDSECEILRNVRHRNLLKILGSCSNLDFKALVL 502 (717)
Q Consensus 426 ~~~~~~~~~lg~G~~g~V~~~~~~-~~~~vavK~~~~~~--~~~~~~~~~e~~~l~~l~hpniv~~~~~~~~~~~~~lv~ 502 (717)
.++|++.+.||+|+||.||+|... +++.||+|++.... ....+.+.+|++++++++||||+++++++.+.+..++||
T Consensus 24 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~lv~ 103 (331)
T 4aaa_A 24 MEKYENLGLVGEGSYGMVMKCRNKDTGRIVAIKKFLESDDDKMVKKIAMREIKLLKQLRHENLVNLLEVCKKKKRWYLVF 103 (331)
T ss_dssp GGGEEEEEEGGGGTTSSEEEEEETTTCCEEEEEEEESCSSCHHHHHHHHHHHHHHHHCCCTTBCCEEEEEEETTEEEEEE
T ss_pred hhhheeeeEEeecCCEEEEEEEECCCCceEEEEEEecCCCchHHHHHHHHHHHHHhhCCCCCEeeEEEEeecCCEEEEEE
Confidence 368999999999999999999976 68999999885443 334466788999999999999999999999999999999
Q ss_pred EccCCCCHHHHHhhCCCCCCHHHHHHHHHHHHHHHHHHhhcCCCCCeEecCCCCCCeeeCCCCcEEEeeeccccccCCCC
Q 005040 503 EFMPNGSLEKWLYSHNYFLDILQRLNIMIDVGSALEYLHHCHSSAPIIHCDLKPTNILLDENMVAHVSDFGISKLLGEGE 582 (717)
Q Consensus 503 e~~~~g~L~~~l~~~~~~~~~~~~~~i~~~i~~~l~~LH~~~~~~~ivH~dlk~~Nill~~~~~~kl~Dfgl~~~~~~~~ 582 (717)
||+++++|.++..... .+++..+..++.|++.||.||| +.+|+||||||+||+++.++.+||+|||++.......
T Consensus 104 e~~~~~~l~~~~~~~~-~~~~~~~~~~~~qi~~~l~~LH----~~~ivH~dlkp~Nil~~~~~~~kl~Dfg~~~~~~~~~ 178 (331)
T 4aaa_A 104 EFVDHTILDDLELFPN-GLDYQVVQKYLFQIINGIGFCH----SHNIIHRDIKPENILVSQSGVVKLCDFGFARTLAAPG 178 (331)
T ss_dssp ECCSEEHHHHHHHSTT-CCCHHHHHHHHHHHHHHHHHHH----HTTCCCCCCCGGGEEECTTSCEEECCCTTC-------
T ss_pred ecCCcchHHHHHhhcc-CCCHHHHHHHHHHHHHHHHHHH----HCCEEccCcChheEEEcCCCcEEEEeCCCceeecCCc
Confidence 9999988888766443 4899999999999999999999 6789999999999999999999999999998764322
Q ss_pred CceeeeccccCccccCCCccCCC-CcCcccchhhHHHHHHHHHhCCCCCCccccCcchHHHHHHhhCC--Cchhh-----
Q 005040 583 DSVIQTMTMATIGYMAPEYGSEG-IVSTKCDVYSYGVLLMETFTEKKPTDEMFTGEMSLRRWVKESLP--HRLTE----- 654 (717)
Q Consensus 583 ~~~~~~~~~~t~~y~aPE~~~~~-~~~~~~Dvws~G~il~el~tg~~p~~~~~~~~~~~~~~~~~~~~--~~~~~----- 654 (717)
. ......||+.|+|||++.+. .++.++||||+|+++|||++|+.||......+ ........... .....
T Consensus 179 ~--~~~~~~~t~~y~aPE~~~~~~~~~~~~Di~slG~il~~l~~g~~pf~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~ 255 (331)
T 4aaa_A 179 E--VYDDEVATRWYRAPELLVGDVKYGKAVDVWAIGCLVTEMFMGEPLFPGDSDID-QLYHIMMCLGNLIPRHQELFNKN 255 (331)
T ss_dssp -------CCCCCTTCCHHHHTTCTTCCTHHHHHHHHHHHHHHHHSSCSCCCSSHHH-HHHHHHHHHCSCCHHHHHHHHHC
T ss_pred c--ccCCCcCCccccCcccccCCCCcchHHHHHHHHHHHHHHHhCCCCCCCCCcHH-HHHHHHHHhCCCChhhhhHhhhc
Confidence 2 22345689999999988765 78999999999999999999999997643221 11111111000 00000
Q ss_pred -----hccccchhhhhhhhhhHHHHHHHHHHHhhccCCCCCCCCCHHHHHH
Q 005040 655 -----VVDANLVREEQAFSDKMDCLFSIMDLALDCCMDTPHKRIHMTDAAA 700 (717)
Q Consensus 655 -----~~~~~~~~~~~~~~~~~~~~~~l~~li~~cl~~~P~~Rpt~~ev~~ 700 (717)
...+..............++.++.+++.+||+.||++|||++|+++
T Consensus 256 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~~L~~dP~~Rpt~~ell~ 306 (331)
T 4aaa_A 256 PVFAGVRLPEIKEREPLERRYPKLSEVVIDLAKKCLHIDPDKRPFCAELLH 306 (331)
T ss_dssp GGGTTCCCCCCSSCCCHHHHSTTSCHHHHHHHHHHTCSSGGGSCCGGGGGG
T ss_pred cccccccCccccccchhhhcccchhHHHHHHHHHHhccCcccCCCHHHHhc
Confidence 0000000000001111245677999999999999999999999886
No 184
>2j7t_A Serine/threonine-protein kinase 10; transferase, ATP-binding, cell cycle progression, phosphorylation, disease mutation, nucleotide- binding; HET: 274; 2.0A {Homo sapiens} PDB: 4aot_A* 3zz2_A* 2j51_A* 2jfl_A* 2jfm_A* 2uv2_A*
Probab=100.00 E-value=3.1e-40 Score=341.13 Aligned_cols=252 Identities=25% Similarity=0.315 Sum_probs=200.6
Q ss_pred hccCCccccccccccEEEEEEEec-CCCeEEEEEechhhHHHHHHHHHHHHHHHhcCCCceeeEeeeeecCCeeEEEEEc
Q 005040 426 TDEFNECNLLGTGGFGSVYKGTLS-DGTNVAIKIFNLQLERAFRSFDSECEILRNVRHRNLLKILGSCSNLDFKALVLEF 504 (717)
Q Consensus 426 ~~~~~~~~~lg~G~~g~V~~~~~~-~~~~vavK~~~~~~~~~~~~~~~e~~~l~~l~hpniv~~~~~~~~~~~~~lv~e~ 504 (717)
.++|++.+.||+|+||.||+|... +++.||+|++........+.+.+|+++++.++||||+++++++.+.+..++||||
T Consensus 18 ~~~y~i~~~lg~G~~g~V~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~lv~e~ 97 (302)
T 2j7t_A 18 NEVWEIVGELGDGAFGKVYKAKNKETGALAAAKVIETKSEEELEDYIVEIEILATCDHPYIVKLLGAYYHDGKLWIMIEF 97 (302)
T ss_dssp GGTEEEEEEEECSTTCCEEEEEETTTCCEEEEEEEC----CCHHHHHHHHHHHHHCCCTTBCCEEEEEECC-CEEEEEEC
T ss_pred ccceeecceeccCCCeEEEEEEEcCCCcEEEEEEecCCCHHHHHHHHHHHHHHhcCCCCCEeeeeeeeeeCCeEEEEEEe
Confidence 468999999999999999999986 6899999999876655667889999999999999999999999999999999999
Q ss_pred cCCCCHHHHHhhCCCCCCHHHHHHHHHHHHHHHHHHhhcCCCCCeEecCCCCCCeeeCCCCcEEEeeeccccccCCCCCc
Q 005040 505 MPNGSLEKWLYSHNYFLDILQRLNIMIDVGSALEYLHHCHSSAPIIHCDLKPTNILLDENMVAHVSDFGISKLLGEGEDS 584 (717)
Q Consensus 505 ~~~g~L~~~l~~~~~~~~~~~~~~i~~~i~~~l~~LH~~~~~~~ivH~dlk~~Nill~~~~~~kl~Dfgl~~~~~~~~~~ 584 (717)
+++++|.+++......+++..+..++.|++.||.||| +.+++||||||+||+++.++.+||+|||++...... .
T Consensus 98 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~l~~lH----~~~i~H~dlkp~Nil~~~~~~~kl~Dfg~~~~~~~~--~ 171 (302)
T 2j7t_A 98 CPGGAVDAIMLELDRGLTEPQIQVVCRQMLEALNFLH----SKRIIHRDLKAGNVLMTLEGDIRLADFGVSAKNLKT--L 171 (302)
T ss_dssp CTTEEHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHH----HTTCCCCCCSGGGEEECTTSCEEECCCHHHHHHHHH--H
T ss_pred CCCCcHHHHHHhhccCCCHHHHHHHHHHHHHHHHHHh----cCCcccCCCCHHHEEECCCCCEEEEECCCCcccccc--c
Confidence 9999999999876666999999999999999999999 678999999999999999999999999987643211 1
Q ss_pred eeeeccccCccccCCCcc-----CCCCcCcccchhhHHHHHHHHHhCCCCCCccccCcchHHHHHHhhCCCchhhhcccc
Q 005040 585 VIQTMTMATIGYMAPEYG-----SEGIVSTKCDVYSYGVLLMETFTEKKPTDEMFTGEMSLRRWVKESLPHRLTEVVDAN 659 (717)
Q Consensus 585 ~~~~~~~~t~~y~aPE~~-----~~~~~~~~~Dvws~G~il~el~tg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 659 (717)
.......||+.|+|||++ .+..++.++||||||+++|||++|+.||....... ..........+.
T Consensus 172 ~~~~~~~~~~~y~aPE~~~~~~~~~~~~~~~~Di~slG~il~~l~~g~~p~~~~~~~~-~~~~~~~~~~~~--------- 241 (302)
T 2j7t_A 172 QKRDSFIGTPYWMAPEVVMCETMKDTPYDYKADIWSLGITLIEMAQIEPPHHELNPMR-VLLKIAKSDPPT--------- 241 (302)
T ss_dssp HC-----CCGGGCCHHHHHHHHTTSTTTTTHHHHHHHHHHHHHHHHSSCTTTTSCHHH-HHHHHHHSCCCC---------
T ss_pred cccccccCChhhcCCeeeccccCCCCCCchhhhHHHHHHHHHHHhcCCCCCccCCHHH-HHHHHhccCCcc---------
Confidence 112234689999999986 46778999999999999999999999997632211 111111111000
Q ss_pred chhhhhhhhhhHHHHHHHHHHHhhccCCCCCCCCCHHHHHH
Q 005040 660 LVREEQAFSDKMDCLFSIMDLALDCCMDTPHKRIHMTDAAA 700 (717)
Q Consensus 660 ~~~~~~~~~~~~~~~~~l~~li~~cl~~~P~~Rpt~~ev~~ 700 (717)
......++.++.+++.+||+.||++|||+.|+++
T Consensus 242 -------~~~~~~~~~~l~~li~~~l~~dp~~Rps~~~ll~ 275 (302)
T 2j7t_A 242 -------LLTPSKWSVEFRDFLKIALDKNPETRPSAAQLLE 275 (302)
T ss_dssp -------CSSGGGSCHHHHHHHHHHSCSCTTTSCCHHHHTT
T ss_pred -------cCCccccCHHHHHHHHHHcccChhhCCCHHHHhc
Confidence 0111234566889999999999999999999975
No 185
>3mwu_A Calmodulin-domain protein kinase 1; serine/threonine protein kinase, transferase, calcium-bindin binding, bumped kinase inhibitor, BKI; HET: BK3; 1.98A {Cryptosporidium parvum} PDB: 3igo_A* 3ncg_A*
Probab=100.00 E-value=3.9e-39 Score=355.20 Aligned_cols=251 Identities=24% Similarity=0.329 Sum_probs=203.8
Q ss_pred HhccCCccccccccccEEEEEEEec-CCCeEEEEEechhh--HHHHHHHHHHHHHHHhcCCCceeeEeeeeecCCeeEEE
Q 005040 425 ATDEFNECNLLGTGGFGSVYKGTLS-DGTNVAIKIFNLQL--ERAFRSFDSECEILRNVRHRNLLKILGSCSNLDFKALV 501 (717)
Q Consensus 425 ~~~~~~~~~~lg~G~~g~V~~~~~~-~~~~vavK~~~~~~--~~~~~~~~~e~~~l~~l~hpniv~~~~~~~~~~~~~lv 501 (717)
..++|++.+.||+|+||+||+|... +++.||||++.... ......+.+|++++++++||||+++++++.+....++|
T Consensus 20 ~~~~y~~~~~lG~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~hpniv~~~~~~~~~~~~~lv 99 (486)
T 3mwu_A 20 FAERYNIVCMLGKGSFGEVLKCKDRITQQEYAVKVINKASAKNKDTSTILREVELLKKLDHPNIMKLFEILEDSSSFYIV 99 (486)
T ss_dssp HHHHEEEEEEEECCSSSEEEEEEETTTCCEEEEEEEEHHHHBCSCHHHHHHHHHHHHHCCCTTBCCEEEEEECSSEEEEE
T ss_pred hhcceEEeEEEeecCCEEEEEEEECCCCCEEEEEEEecccccchHHHHHHHHHHHHHhCCCCCcCeEEEEEEcCCEEEEE
Confidence 3478999999999999999999976 79999999997553 23456788999999999999999999999999999999
Q ss_pred EEccCCCCHHHHHhhCCCCCCHHHHHHHHHHHHHHHHHHhhcCCCCCeEecCCCCCCeeeC---CCCcEEEeeecccccc
Q 005040 502 LEFMPNGSLEKWLYSHNYFLDILQRLNIMIDVGSALEYLHHCHSSAPIIHCDLKPTNILLD---ENMVAHVSDFGISKLL 578 (717)
Q Consensus 502 ~e~~~~g~L~~~l~~~~~~~~~~~~~~i~~~i~~~l~~LH~~~~~~~ivH~dlk~~Nill~---~~~~~kl~Dfgl~~~~ 578 (717)
|||+.+|+|.+++.... .+++..+..++.|++.||.||| +.+|+||||||+||+++ .++.+||+|||++...
T Consensus 100 ~e~~~~~~L~~~~~~~~-~~~~~~~~~i~~qi~~al~~lH----~~~ivH~Dlkp~Nil~~~~~~~~~~kl~Dfg~a~~~ 174 (486)
T 3mwu_A 100 GELYTGGELFDEIIKRK-RFSEHDAARIIKQVFSGITYMH----KHNIVHRDLKPENILLESKEKDCDIKIIDFGLSTCF 174 (486)
T ss_dssp ECCCCSCBHHHHHHHHS-SCCHHHHHHHHHHHHHHHHHHH----HTTCCCSCCSGGGEEESSSSTTCCEEECSCSCTTTB
T ss_pred EEcCCCCcHHHHHHhcC-CCCHHHHHHHHHHHHHHHHHHH----HCCeEeccCchHHEEEecCCCCCCEEEEECCcCeEC
Confidence 99999999999987654 4899999999999999999999 67899999999999995 5668999999999876
Q ss_pred CCCCCceeeeccccCccccCCCccCCCCcCcccchhhHHHHHHHHHhCCCCCCccccCcchHHHHHHh-hCCCchhhhcc
Q 005040 579 GEGEDSVIQTMTMATIGYMAPEYGSEGIVSTKCDVYSYGVLLMETFTEKKPTDEMFTGEMSLRRWVKE-SLPHRLTEVVD 657 (717)
Q Consensus 579 ~~~~~~~~~~~~~~t~~y~aPE~~~~~~~~~~~Dvws~G~il~el~tg~~p~~~~~~~~~~~~~~~~~-~~~~~~~~~~~ 657 (717)
.... ......||+.|+|||++.+ .++.++||||+||++|+|++|+.||.+... ......+.. .....
T Consensus 175 ~~~~---~~~~~~gt~~y~aPE~~~~-~~~~~~DiwslG~il~~ll~g~~pf~~~~~--~~~~~~i~~~~~~~~------ 242 (486)
T 3mwu_A 175 QQNT---KMKDRIGTAYYIAPEVLRG-TYDEKCDVWSAGVILYILLSGTPPFYGKNE--YDILKRVETGKYAFD------ 242 (486)
T ss_dssp CCC-------CCTTGGGGCCGGGGGS-CCCHHHHHHHHHHHHHHHHHSSCSSCCSSH--HHHHHHHHHTCCCSC------
T ss_pred CCCC---ccCCCcCCCCCCCHHHhCC-CCCchhhHHHHHHHHHHHHhCCCCCCCCCH--HHHHHHHHhCCCCCC------
Confidence 4432 2234579999999999875 589999999999999999999999976321 111111111 11000
Q ss_pred ccchhhhhhhhhhHHHHHHHHHHHhhccCCCCCCCCCHHHHHHH
Q 005040 658 ANLVREEQAFSDKMDCLFSIMDLALDCCMDTPHKRIHMTDAAAK 701 (717)
Q Consensus 658 ~~~~~~~~~~~~~~~~~~~l~~li~~cl~~~P~~Rpt~~ev~~~ 701 (717)
.+....++.++.+++.+||+.||++|||+.|+++.
T Consensus 243 ---------~~~~~~~s~~~~~li~~~L~~dp~~R~t~~~~l~h 277 (486)
T 3mwu_A 243 ---------LPQWRTISDDAKDLIRKMLTFHPSLRITATQCLEH 277 (486)
T ss_dssp ---------SGGGGGSCHHHHHHHHHHTCSSTTTSCCHHHHHHC
T ss_pred ---------CcccCCCCHHHHHHHHHHcCCChhhCcCHHHHhcC
Confidence 11122345678899999999999999999999873
No 186
>3nsz_A CK II alpha, casein kinase II subunit alpha; inhibitor, transferase-transferase inhibitor CO; HET: ANP; 1.30A {Homo sapiens} SCOP: d.144.1.7 PDB: 2r7i_A 3pe1_A* 1jwh_A* 3pe2_A* 3r0t_A* 3h30_A* 3q9w_A* 3q9x_A* 3q9y_A* 3q9z_A* 3qa0_A 3bqc_A* 2rkp_A* 3c13_A* 3fwq_A 3rps_A* 3u9c_A* 4fbx_A* 3mb7_A* 3mb6_A* ...
Probab=100.00 E-value=2.2e-39 Score=339.29 Aligned_cols=260 Identities=20% Similarity=0.285 Sum_probs=201.3
Q ss_pred ccCCccccccccccEEEEEEEec-CCCeEEEEEechhhHHHHHHHHHHHHHHHhcC-CCceeeEeeeeec--CCeeEEEE
Q 005040 427 DEFNECNLLGTGGFGSVYKGTLS-DGTNVAIKIFNLQLERAFRSFDSECEILRNVR-HRNLLKILGSCSN--LDFKALVL 502 (717)
Q Consensus 427 ~~~~~~~~lg~G~~g~V~~~~~~-~~~~vavK~~~~~~~~~~~~~~~e~~~l~~l~-hpniv~~~~~~~~--~~~~~lv~ 502 (717)
++|++.+.||+|+||.||+|... +++.||||++.... .+.+.+|++++++++ ||||+++++++.+ ....++||
T Consensus 36 ~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~---~~~~~~E~~~l~~l~~~~~i~~~~~~~~~~~~~~~~lv~ 112 (330)
T 3nsz_A 36 DDYQLVRKLGRGKYSEVFEAINITNNEKVVVKILKPVK---KKKIKREIKILENLRGGPNIITLADIVKDPVSRTPALVF 112 (330)
T ss_dssp GGEEEEEEEEECSSEEEEEEEETTTCCEEEEEEECSCC---HHHHHHHHHHHHHHTTSTTBCCEEEEEECTTTCCEEEEE
T ss_pred CceEEEEEecccCCeEEEEEEECCCCcEEEEEEecccc---hHHHHHHHHHHHHcCCCCCEEEeeeeeccCCCCceEEEE
Confidence 68999999999999999999864 78999999987443 356788999999997 9999999999987 66789999
Q ss_pred EccCCCCHHHHHhhCCCCCCHHHHHHHHHHHHHHHHHHhhcCCCCCeEecCCCCCCeeeCCCC-cEEEeeeccccccCCC
Q 005040 503 EFMPNGSLEKWLYSHNYFLDILQRLNIMIDVGSALEYLHHCHSSAPIIHCDLKPTNILLDENM-VAHVSDFGISKLLGEG 581 (717)
Q Consensus 503 e~~~~g~L~~~l~~~~~~~~~~~~~~i~~~i~~~l~~LH~~~~~~~ivH~dlk~~Nill~~~~-~~kl~Dfgl~~~~~~~ 581 (717)
||+++++|.++++. +++..+..++.|++.||+||| +.+|+||||||+||+++.++ .+||+|||+++.....
T Consensus 113 e~~~~~~l~~~~~~----~~~~~~~~~~~qi~~~l~~lH----~~~ivH~Dikp~Nil~~~~~~~~kl~Dfg~a~~~~~~ 184 (330)
T 3nsz_A 113 EHVNNTDFKQLYQT----LTDYDIRFYMYEILKALDYCH----SMGIMHRDVKPHNVMIDHEHRKLRLIDWGLAEFYHPG 184 (330)
T ss_dssp ECCCCCCHHHHGGG----CCHHHHHHHHHHHHHHHHHHH----HTTEECCCCSGGGEEEETTTTEEEECCCTTCEECCTT
T ss_pred eccCchhHHHHHHh----CCHHHHHHHHHHHHHHHHHHH----hCCeeeCCCCHHHEEEcCCCCEEEEEeCCCceEcCCC
Confidence 99999999999864 789999999999999999999 67899999999999999776 8999999999876543
Q ss_pred CCceeeeccccCccccCCCccCC-CCcCcccchhhHHHHHHHHHhCCCCCCccccCcchHHHHHHhhCCCc---------
Q 005040 582 EDSVIQTMTMATIGYMAPEYGSE-GIVSTKCDVYSYGVLLMETFTEKKPTDEMFTGEMSLRRWVKESLPHR--------- 651 (717)
Q Consensus 582 ~~~~~~~~~~~t~~y~aPE~~~~-~~~~~~~Dvws~G~il~el~tg~~p~~~~~~~~~~~~~~~~~~~~~~--------- 651 (717)
.. .....+|..|+|||++.+ ..++.++||||+||++|||++|+.||.........+...........
T Consensus 185 ~~---~~~~~~~~~y~aPE~~~~~~~~~~~~DiwslG~il~~ll~g~~p~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 261 (330)
T 3nsz_A 185 QE---YNVRVASRYFKGPELLVDYQMYDYSLDMWSLGCMLASMIFRKEPFFHGHDNYDQLVRIAKVLGTEDLYDYIDKYN 261 (330)
T ss_dssp CC---CCSCCSCGGGCCHHHHTTCCCCCTHHHHHHHHHHHHHHHHTCSSSSCCSSHHHHHHHHHHHHCHHHHHHHHHHTT
T ss_pred Cc---cccccccccccChhhhcCCCcCCchhhHHHHHHHHHHHHhCCCCcccCCchHHHHHHHHHhcCCchhhhHHHHhc
Confidence 32 234568999999998776 67899999999999999999999999543322222222111111000
Q ss_pred ------hhhhccccch---hhhhhhhhhHHHHHHHHHHHhhccCCCCCCCCCHHHHHH
Q 005040 652 ------LTEVVDANLV---REEQAFSDKMDCLFSIMDLALDCCMDTPHKRIHMTDAAA 700 (717)
Q Consensus 652 ------~~~~~~~~~~---~~~~~~~~~~~~~~~l~~li~~cl~~~P~~Rpt~~ev~~ 700 (717)
..+....... ...........++.++.+++.+||+.||++|||++|+++
T Consensus 262 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~Rpta~e~l~ 319 (330)
T 3nsz_A 262 IELDPRFNDILGRHSRKRWERFVHSENQHLVSPEALDFLDKLLRYDHQSRLTAREAME 319 (330)
T ss_dssp CCCCTHHHHHHCCCCCCCGGGGCCTTTGGGCCHHHHHHHHTTSCSSGGGSCCHHHHHT
T ss_pred cccccchhhhhhhccccchhhhccccccccCCHHHHHHHHHHhcCCcccCCCHHHHhc
Confidence 0000000000 000000111235677899999999999999999999986
No 187
>2vgo_A Serine/threonine-protein kinase 12-A; nucleotide-binding, serine/threonine-protein kinase, ATP-binding, transferase, coiled coil, cell division, kinase; HET: TPO AD5; 1.7A {Xenopus laevis} PDB: 2bfx_A* 2vgp_A* 3ztx_A* 2vrx_A* 2bfy_A* 4af3_A* 3dj6_A* 3d15_A* 3d2i_A* 3d2k_A* 3d14_A* 3dj5_A* 3dj7_A* 3daj_A* 1ol5_A* 1ol7_A* 2x6d_A* 2x6e_A* 2xng_A* 2dwb_A* ...
Probab=100.00 E-value=2.3e-39 Score=331.49 Aligned_cols=246 Identities=26% Similarity=0.341 Sum_probs=204.0
Q ss_pred hccCCccccccccccEEEEEEEec-CCCeEEEEEechhh---HHHHHHHHHHHHHHHhcCCCceeeEeeeeecCCeeEEE
Q 005040 426 TDEFNECNLLGTGGFGSVYKGTLS-DGTNVAIKIFNLQL---ERAFRSFDSECEILRNVRHRNLLKILGSCSNLDFKALV 501 (717)
Q Consensus 426 ~~~~~~~~~lg~G~~g~V~~~~~~-~~~~vavK~~~~~~---~~~~~~~~~e~~~l~~l~hpniv~~~~~~~~~~~~~lv 501 (717)
.++|++.+.||+|+||.||+|... +++.||+|++.... ....+.+.+|++++++++||||+++++++.+.+..++|
T Consensus 13 ~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~lv 92 (284)
T 2vgo_A 13 IDDFDIGRPLGKGKFGNVYLAREKQNKFIMALKVLFKSQLEKEGVEHQLRREIEIQSHLRHPNILRMYNYFHDRKRIYLM 92 (284)
T ss_dssp GGGEEEEEEEEECSSEEEEEEEETTTTEEEEEEEEEHHHHHHTTCHHHHHHHHHHHHTCCCTTBCCEEEEEECSSEEEEE
T ss_pred hhhceeeheecCCCCeEEEEEEEcCCCcEEEEEEEcccccchHHHHHHHHHHHHHHhcCCCCCEeeEEEEEEcCCEEEEE
Confidence 368999999999999999999976 68889999997553 22246788999999999999999999999999999999
Q ss_pred EEccCCCCHHHHHhhCCCCCCHHHHHHHHHHHHHHHHHHhhcCCCCCeEecCCCCCCeeeCCCCcEEEeeeccccccCCC
Q 005040 502 LEFMPNGSLEKWLYSHNYFLDILQRLNIMIDVGSALEYLHHCHSSAPIIHCDLKPTNILLDENMVAHVSDFGISKLLGEG 581 (717)
Q Consensus 502 ~e~~~~g~L~~~l~~~~~~~~~~~~~~i~~~i~~~l~~LH~~~~~~~ivH~dlk~~Nill~~~~~~kl~Dfgl~~~~~~~ 581 (717)
|||+++|+|.+++...+ .+++..+..++.|++.||.||| +.+|+||||||+||+++.++.+||+|||++......
T Consensus 93 ~e~~~~~~L~~~l~~~~-~~~~~~~~~~~~qi~~~l~~lH----~~~i~H~dl~p~Nil~~~~~~~kl~Dfg~~~~~~~~ 167 (284)
T 2vgo_A 93 LEFAPRGELYKELQKHG-RFDEQRSATFMEELADALHYCH----ERKVIHRDIKPENLLMGYKGELKIADFGWSVHAPSL 167 (284)
T ss_dssp ECCCTTEEHHHHHHHHS-SCCHHHHHHHHHHHHHHHHHHH----TTTEECCCCSGGGEEECTTCCEEECCCTTCEECSSS
T ss_pred EEeCCCCcHHHHHHhcC-CCCHHHHHHHHHHHHHHHHHHH----HCCceecCCCHHHEEEcCCCCEEEecccccccCccc
Confidence 99999999999998654 4899999999999999999999 789999999999999999999999999998765432
Q ss_pred CCceeeeccccCccccCCCccCCCCcCcccchhhHHHHHHHHHhCCCCCCccccCcchHHHHHHhhCCCchhhhccccch
Q 005040 582 EDSVIQTMTMATIGYMAPEYGSEGIVSTKCDVYSYGVLLMETFTEKKPTDEMFTGEMSLRRWVKESLPHRLTEVVDANLV 661 (717)
Q Consensus 582 ~~~~~~~~~~~t~~y~aPE~~~~~~~~~~~Dvws~G~il~el~tg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 661 (717)
. .....|++.|+|||++.+..++.++||||+|+++|||++|+.||...... .....+... +..+
T Consensus 168 ~----~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~g~~pf~~~~~~--~~~~~~~~~---------~~~~- 231 (284)
T 2vgo_A 168 R----RRTMCGTLDYLPPEMIEGKTHDEKVDLWCAGVLCYEFLVGMPPFDSPSHT--ETHRRIVNV---------DLKF- 231 (284)
T ss_dssp C----BCCCCSCGGGCCHHHHTTCCBCTTHHHHHHHHHHHHHHHSSCTTCCSSHH--HHHHHHHTT---------CCCC-
T ss_pred c----cccccCCCCcCCHHHhccCCCCcccchhhHHHHHHHHHHCCCCCCCCCHh--HHHHHHhcc---------ccCC-
Confidence 2 23456899999999999999999999999999999999999999753211 111111000 0000
Q ss_pred hhhhhhhhhHHHHHHHHHHHhhccCCCCCCCCCHHHHHH
Q 005040 662 REEQAFSDKMDCLFSIMDLALDCCMDTPHKRIHMTDAAA 700 (717)
Q Consensus 662 ~~~~~~~~~~~~~~~l~~li~~cl~~~P~~Rpt~~ev~~ 700 (717)
+..++.++.+++.+|++.||++|||+.|+++
T Consensus 232 --------~~~~~~~~~~li~~~l~~~p~~Rps~~~ll~ 262 (284)
T 2vgo_A 232 --------PPFLSDGSKDLISKLLRYHPPQRLPLKGVME 262 (284)
T ss_dssp --------CTTSCHHHHHHHHHHSCSSGGGSCCHHHHHT
T ss_pred --------CCcCCHHHHHHHHHHhhcCHhhCCCHHHHhh
Confidence 0123456789999999999999999999986
No 188
>2h8h_A Proto-oncogene tyrosine-protein kinase SRC; SRC kinase, transferase; HET: PTR H8H; 2.20A {Homo sapiens} SCOP: b.34.2.1 d.93.1.1 d.144.1.7
Probab=100.00 E-value=1.2e-40 Score=370.14 Aligned_cols=263 Identities=27% Similarity=0.425 Sum_probs=213.0
Q ss_pred HhccCCccccccccccEEEEEEEecCCCeEEEEEechhhHHHHHHHHHHHHHHHhcCCCceeeEeeeeecCCeeEEEEEc
Q 005040 425 ATDEFNECNLLGTGGFGSVYKGTLSDGTNVAIKIFNLQLERAFRSFDSECEILRNVRHRNLLKILGSCSNLDFKALVLEF 504 (717)
Q Consensus 425 ~~~~~~~~~~lg~G~~g~V~~~~~~~~~~vavK~~~~~~~~~~~~~~~e~~~l~~l~hpniv~~~~~~~~~~~~~lv~e~ 504 (717)
..++|++.+.||+|+||.||+|.++++..||||+++.... ..+.+.+|++++++++||||+++++++.+ +..++||||
T Consensus 265 ~~~~~~~~~~lG~G~fg~Vy~~~~~~~~~vavK~~~~~~~-~~~~~~~E~~~l~~l~hpniv~~~~~~~~-~~~~lv~e~ 342 (535)
T 2h8h_A 265 PRESLRLEVKLGQGCFGEVWMGTWNGTTRVAIKTLKPGTM-SPEAFLQEAQVMKKLRHEKLVQLYAVVSE-EPIYIVTEY 342 (535)
T ss_dssp CGGGEEEEEEEEECSSEEEEEEEETTTEEEEEEEECTTSS-CHHHHHHHHHHHHHCCCTTBCCEEEEECS-SSCEEEECC
T ss_pred chhhhhhheecccCCCeEEEEEEECCCceEEEEEeCCCCC-CHHHHHHHHHHHHhCCCCCEeeEEEEEee-ccceEeeeh
Confidence 3467889999999999999999998888899999975432 24678999999999999999999999876 678999999
Q ss_pred cCCCCHHHHHhhC-CCCCCHHHHHHHHHHHHHHHHHHhhcCCCCCeEecCCCCCCeeeCCCCcEEEeeeccccccCCCCC
Q 005040 505 MPNGSLEKWLYSH-NYFLDILQRLNIMIDVGSALEYLHHCHSSAPIIHCDLKPTNILLDENMVAHVSDFGISKLLGEGED 583 (717)
Q Consensus 505 ~~~g~L~~~l~~~-~~~~~~~~~~~i~~~i~~~l~~LH~~~~~~~ivH~dlk~~Nill~~~~~~kl~Dfgl~~~~~~~~~ 583 (717)
+++|+|.++++.. ...+++..+..++.||+.||+||| +++|+||||||+|||++.++.+||+|||+++......
T Consensus 343 ~~~gsL~~~l~~~~~~~l~~~~~~~i~~qi~~~L~~LH----~~~ivHrDlkp~NIll~~~~~~kl~DFG~a~~~~~~~- 417 (535)
T 2h8h_A 343 MSKGSLLDFLKGETGKYLRLPQLVDMAAQIASGMAYVE----RMNYVHRDLRAANILVGENLVCKVADFGLARLIEDNE- 417 (535)
T ss_dssp CTTEEHHHHHSHHHHTTCCHHHHHHHHHHHHHHHHHHH----HTTCCCSCCSGGGEEECGGGCEEECCTTSTTTCCCHH-
T ss_pred hcCCcHHHHHhhcCCCCCCHHHHHHHHHHHHHHHHHHH----hCCeeCCCCCHhhEEEcCCCcEEEcccccceecCCCc-
Confidence 9999999999853 345899999999999999999999 6789999999999999999999999999998764321
Q ss_pred ceeeeccccCccccCCCccCCCCcCcccchhhHHHHHHHHHh-CCCCCCccccCcchHHHHHHhhCCCchhhhccccchh
Q 005040 584 SVIQTMTMATIGYMAPEYGSEGIVSTKCDVYSYGVLLMETFT-EKKPTDEMFTGEMSLRRWVKESLPHRLTEVVDANLVR 662 (717)
Q Consensus 584 ~~~~~~~~~t~~y~aPE~~~~~~~~~~~Dvws~G~il~el~t-g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 662 (717)
........++..|+|||++.+..++.++|||||||++|||++ |+.||.+.... .....+.....
T Consensus 418 ~~~~~~~~~~~~y~aPE~~~~~~~~~~sDvwSlGv~l~el~t~g~~P~~~~~~~--~~~~~i~~~~~------------- 482 (535)
T 2h8h_A 418 YTARQGAKFPIKWTAPEAALYGRFTIKSDVWSFGILLTELTTKGRVPYPGMVNR--EVLDQVERGYR------------- 482 (535)
T ss_dssp HHTTCSTTSCGGGSCHHHHHHCCCCHHHHHHHHHHHHHHHTTTTCCSSTTCCHH--HHHHHHHTTCC-------------
T ss_pred eecccCCcCcccccCHHHhccCCCCchhhHHHHHHHHHHHHhCCCCCCCCCCHH--HHHHHHHcCCC-------------
Confidence 111223356788999999988899999999999999999999 99999764221 11111111100
Q ss_pred hhhhhhhhHHHHHHHHHHHhhccCCCCCCCCCHHHHHHHHHHhHHhhccch
Q 005040 663 EEQAFSDKMDCLFSIMDLALDCCMDTPHKRIHMTDAAAKLRKIKAKFLDDV 713 (717)
Q Consensus 663 ~~~~~~~~~~~~~~l~~li~~cl~~~P~~Rpt~~ev~~~L~~~~~~~~~~~ 713 (717)
......++.++.++|.+||+.||++|||+.++++.|+.+......++
T Consensus 483 ----~~~~~~~~~~l~~li~~cl~~dP~~RPt~~~l~~~L~~~~~~~~~~~ 529 (535)
T 2h8h_A 483 ----MPCPPECPESLHDLMCQCWRKEPEERPTFEYLQAFLEDYFTSTEPQY 529 (535)
T ss_dssp ----CCCCTTCCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHTSSCCCSCSS
T ss_pred ----CCCCCCCCHHHHHHHHHHcCCChhHCcCHHHHHHHHHHHhhccCccc
Confidence 01112455678899999999999999999999999998866544443
No 189
>2owb_A Serine/threonine-protein kinase PLK1; catalytic domain, POLO-like kinase1, transfera; HET: 626; 2.10A {Homo sapiens} PDB: 2ou7_A* 3fc2_A* 3thb_A*
Probab=100.00 E-value=1.8e-39 Score=340.26 Aligned_cols=248 Identities=23% Similarity=0.282 Sum_probs=205.2
Q ss_pred hccCCccccccccccEEEEEEEec-CCCeEEEEEechhh---HHHHHHHHHHHHHHHhcCCCceeeEeeeeecCCeeEEE
Q 005040 426 TDEFNECNLLGTGGFGSVYKGTLS-DGTNVAIKIFNLQL---ERAFRSFDSECEILRNVRHRNLLKILGSCSNLDFKALV 501 (717)
Q Consensus 426 ~~~~~~~~~lg~G~~g~V~~~~~~-~~~~vavK~~~~~~---~~~~~~~~~e~~~l~~l~hpniv~~~~~~~~~~~~~lv 501 (717)
..+|.+.+.||+|+||.||+|... +++.||+|++.... ....+.+.+|+.+++.++||||+++++++.+.+..++|
T Consensus 40 ~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~~a~K~~~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~lv 119 (335)
T 2owb_A 40 RRRYVRGRFLGKGGFAKCFEISDADTKEVFAGKIVPKSLLLKPHQREKMSMEISIHRSLAHQHVVGFHGFFEDNDFVFVV 119 (335)
T ss_dssp TEEEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEEGGGCCSHHHHHHHHHHHHHHHTCCCTTBCCEEEEEECSSEEEEE
T ss_pred CCceEEEEEEeeCCCeEEEEEEECCCCCEEEEEEechhhhcCHHHHHHHHHHHHHHHhCCCCCCCeEEEEEecCCeEEEE
Confidence 468999999999999999999976 68899999987553 34556788999999999999999999999999999999
Q ss_pred EEccCCCCHHHHHhhCCCCCCHHHHHHHHHHHHHHHHHHhhcCCCCCeEecCCCCCCeeeCCCCcEEEeeeccccccCCC
Q 005040 502 LEFMPNGSLEKWLYSHNYFLDILQRLNIMIDVGSALEYLHHCHSSAPIIHCDLKPTNILLDENMVAHVSDFGISKLLGEG 581 (717)
Q Consensus 502 ~e~~~~g~L~~~l~~~~~~~~~~~~~~i~~~i~~~l~~LH~~~~~~~ivH~dlk~~Nill~~~~~~kl~Dfgl~~~~~~~ 581 (717)
|||+++++|.+++.... .+++..+..++.|+++||.||| +.+|+||||||+||+++.++.+||+|||++......
T Consensus 120 ~e~~~~~~L~~~~~~~~-~l~~~~~~~i~~qi~~aL~~LH----~~~ivH~dlkp~NIl~~~~~~~kl~Dfg~~~~~~~~ 194 (335)
T 2owb_A 120 LELCRRRSLLELHKRRK-ALTEPEARYYLRQIVLGCQYLH----RNRVIHRDLKLGNLFLNEDLEVKIGDFGLATKVEYD 194 (335)
T ss_dssp ECCCTTCBHHHHHHHHC-SCCHHHHHHHHHHHHHHHHHHH----HTTEECSCCCGGGEEECTTCCEEECCCTTCEECCST
T ss_pred EecCCCCCHHHHHhccC-CCCHHHHHHHHHHHHHHHHHHH----HCCCEecCCCchhEEEcCCCCEEEeeccCceecccC
Confidence 99999999999987653 4899999999999999999999 678999999999999999999999999999876432
Q ss_pred CCceeeeccccCccccCCCccCCCCcCcccchhhHHHHHHHHHhCCCCCCccccCcchHHHHHHhhCCCchhhhccccch
Q 005040 582 EDSVIQTMTMATIGYMAPEYGSEGIVSTKCDVYSYGVLLMETFTEKKPTDEMFTGEMSLRRWVKESLPHRLTEVVDANLV 661 (717)
Q Consensus 582 ~~~~~~~~~~~t~~y~aPE~~~~~~~~~~~Dvws~G~il~el~tg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 661 (717)
.. ......||+.|+|||++.+..++.++||||||+++|||++|+.||......+ ..........
T Consensus 195 ~~--~~~~~~gt~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~g~~pf~~~~~~~-~~~~~~~~~~------------- 258 (335)
T 2owb_A 195 GE--RKKVLCGTPNYIAPEVLSKKGHSFEVDVWSIGCIMYTLLVGKPPFETSCLKE-TYLRIKKNEY------------- 258 (335)
T ss_dssp TC--CBCCCCSCCSSCCHHHHHTSCBCTHHHHHHHHHHHHHHHHSSCTTCCSSHHH-HHHHHHHTCC-------------
T ss_pred cc--cccccCCCccccCHHHhccCCCCchhhHHHHHHHHHHHHHCcCCCCCCCHHH-HHHHHhcCCC-------------
Confidence 22 1234568999999999988889999999999999999999999997532111 1111101000
Q ss_pred hhhhhhhhhHHHHHHHHHHHhhccCCCCCCCCCHHHHHH
Q 005040 662 REEQAFSDKMDCLFSIMDLALDCCMDTPHKRIHMTDAAA 700 (717)
Q Consensus 662 ~~~~~~~~~~~~~~~l~~li~~cl~~~P~~Rpt~~ev~~ 700 (717)
.....++..+.+++.+||+.||++|||+.|+++
T Consensus 259 ------~~~~~~~~~~~~li~~~l~~dp~~Rps~~ell~ 291 (335)
T 2owb_A 259 ------SIPKHINPVAASLIQKMLQTDPTARPTINELLN 291 (335)
T ss_dssp ------CCCTTSCHHHHHHHHHHTCSSGGGSCCGGGGGG
T ss_pred ------CCCccCCHHHHHHHHHHccCChhHCcCHHHHhc
Confidence 001123456789999999999999999999986
No 190
>3fme_A Dual specificity mitogen-activated protein kinase; active mutant, structural genomics consortium, SCG, binding, nucleotide-binding, phosphoprotein; HET: STU; 2.26A {Homo sapiens} PDB: 3enm_A
Probab=100.00 E-value=2.5e-39 Score=332.29 Aligned_cols=250 Identities=24% Similarity=0.286 Sum_probs=189.1
Q ss_pred hccCCccccccccccEEEEEEEec-CCCeEEEEEechhh--HHHHHHHHHHHHHHHhcCCCceeeEeeeeecCCeeEEEE
Q 005040 426 TDEFNECNLLGTGGFGSVYKGTLS-DGTNVAIKIFNLQL--ERAFRSFDSECEILRNVRHRNLLKILGSCSNLDFKALVL 502 (717)
Q Consensus 426 ~~~~~~~~~lg~G~~g~V~~~~~~-~~~~vavK~~~~~~--~~~~~~~~~e~~~l~~l~hpniv~~~~~~~~~~~~~lv~ 502 (717)
.++|++.+.||+|+||.||+|... +++.||+|++.... ....+.+.++...++.++||||+++++++.+.+..++||
T Consensus 6 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~~~~~~~~~h~~iv~~~~~~~~~~~~~lv~ 85 (290)
T 3fme_A 6 ADDLEPIMELGRGAYGVVEKMRHVPSGQIMAVKRIRATVNSQEQKRLLMDLDISMRTVDCPFTVTFYGALFREGDVWICM 85 (290)
T ss_dssp GGGEEEEEEEEECSSEEEEEEEETTTTEEEEEEEEC---CHHHHHHHHHHHHHHHTTCCCTTBCCEEEEEECSSSEEEEE
T ss_pred HHhhhhHHhcCCCCCeEEEEEEecCCCeEEEEEEeecccCcHHHHHHHHHHHHHHHhCCCCeEEEEeeeeeccCCEEEEE
Confidence 478999999999999999999974 78999999997553 223344555666688889999999999999999999999
Q ss_pred EccCCCCHHHHHhh---CCCCCCHHHHHHHHHHHHHHHHHHhhcCCCC-CeEecCCCCCCeeeCCCCcEEEeeecccccc
Q 005040 503 EFMPNGSLEKWLYS---HNYFLDILQRLNIMIDVGSALEYLHHCHSSA-PIIHCDLKPTNILLDENMVAHVSDFGISKLL 578 (717)
Q Consensus 503 e~~~~g~L~~~l~~---~~~~~~~~~~~~i~~~i~~~l~~LH~~~~~~-~ivH~dlk~~Nill~~~~~~kl~Dfgl~~~~ 578 (717)
||++ |+|.+++.. ....+++..+..++.|++.||+||| +. +|+||||||+||+++.++.+||+|||++...
T Consensus 86 e~~~-~~l~~~l~~~~~~~~~~~~~~~~~i~~qi~~~l~~lH----~~~~i~H~dlkp~Nil~~~~~~~kl~Dfg~~~~~ 160 (290)
T 3fme_A 86 ELMD-TSLDKFYKQVIDKGQTIPEDILGKIAVSIVKALEHLH----SKLSVIHRDVKPSNVLINALGQVKMCDFGISGYL 160 (290)
T ss_dssp ECCS-EEHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHHH----HHSCCCCCCCSGGGCEECTTCCEEBCCC------
T ss_pred ehhc-cchHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHh----hcCCeecCCCCHHHEEECCCCCEEEeecCCcccc
Confidence 9997 588888764 4556999999999999999999999 55 8999999999999999999999999999876
Q ss_pred CCCCCceeeeccccCccccCCCcc----CCCCcCcccchhhHHHHHHHHHhCCCCCCccccCcchHHHHHHhhCCCchhh
Q 005040 579 GEGEDSVIQTMTMATIGYMAPEYG----SEGIVSTKCDVYSYGVLLMETFTEKKPTDEMFTGEMSLRRWVKESLPHRLTE 654 (717)
Q Consensus 579 ~~~~~~~~~~~~~~t~~y~aPE~~----~~~~~~~~~Dvws~G~il~el~tg~~p~~~~~~~~~~~~~~~~~~~~~~~~~ 654 (717)
.... ......||+.|+|||++ .+..++.++||||+|+++|||++|+.||..................+..
T Consensus 161 ~~~~---~~~~~~~t~~y~aPE~~~~~~~~~~~~~~~Di~slG~il~~l~~g~~p~~~~~~~~~~~~~~~~~~~~~~--- 234 (290)
T 3fme_A 161 VDDV---AKDIDAGCKPYMAPERINPELNQKGYSVKSDIWSLGITMIELAILRFPYDSWGTPFQQLKQVVEEPSPQL--- 234 (290)
T ss_dssp ------------CCCCCCSCHHHHSCCTTC--CCHHHHHHHHHHHHHHHHHTSCSSCCCSCHHHHHHHHHHSCCCCC---
T ss_pred cccc---cccccCCCccccChhhcChhhcCcCCCcHHHHHHHHHHHHHHHHCCCCccccCchHHHHHHHhccCCCCc---
Confidence 4332 12334689999999985 6677899999999999999999999999753222222222222111110
Q ss_pred hccccchhhhhhhhhhHHHHHHHHHHHhhccCCCCCCCCCHHHHHH
Q 005040 655 VVDANLVREEQAFSDKMDCLFSIMDLALDCCMDTPHKRIHMTDAAA 700 (717)
Q Consensus 655 ~~~~~~~~~~~~~~~~~~~~~~l~~li~~cl~~~P~~Rpt~~ev~~ 700 (717)
....++.++.+++.+||+.||++|||+.|+++
T Consensus 235 --------------~~~~~~~~~~~li~~~l~~~p~~Rpt~~e~l~ 266 (290)
T 3fme_A 235 --------------PADKFSAEFVDFTSQCLKKNSKERPTYPELMQ 266 (290)
T ss_dssp --------------CTTTSCHHHHHHHHHHTCSSGGGSCCHHHHTT
T ss_pred --------------ccccCCHHHHHHHHHHhhcChhhCcCHHHHHh
Confidence 01123456889999999999999999999987
No 191
>4fl3_A Tyrosine-protein kinase SYK; transferase; HET: ANP; 1.90A {Homo sapiens} PDB: 4fl2_A* 1a81_A* 1csy_A* 1csz_A*
Probab=100.00 E-value=2.1e-39 Score=366.17 Aligned_cols=253 Identities=26% Similarity=0.394 Sum_probs=201.9
Q ss_pred ccccccccEEEEEEEec---CCCeEEEEEechhh--HHHHHHHHHHHHHHHhcCCCceeeEeeeeecCCeeEEEEEccCC
Q 005040 433 NLLGTGGFGSVYKGTLS---DGTNVAIKIFNLQL--ERAFRSFDSECEILRNVRHRNLLKILGSCSNLDFKALVLEFMPN 507 (717)
Q Consensus 433 ~~lg~G~~g~V~~~~~~---~~~~vavK~~~~~~--~~~~~~~~~e~~~l~~l~hpniv~~~~~~~~~~~~~lv~e~~~~ 507 (717)
+.||+|+||.||+|.+. .++.||||+++... ....+.+.+|++++++++||||+++++++.+ +..++||||+++
T Consensus 375 ~~LG~G~fG~Vy~~~~~~~~~~~~vAvK~~~~~~~~~~~~~~~~~E~~il~~l~hpnIv~l~~~~~~-~~~~lv~E~~~~ 453 (635)
T 4fl3_A 375 KELGSGNFGTVKKGYYQMKKVVKTVAVKILKNEANDPALKDELLAEANVMQQLDNPYIVRMIGICEA-ESWMLVMEMAEL 453 (635)
T ss_dssp EEEEECSSEEEEEEEEECSSCEEEEEEEEECGGGGCGGGHHHHHHHHHHHHHCCCTTBCCEEEEEES-SSEEEEEECCTT
T ss_pred CEeccCCCEEEEEEEEcCCCcceEEEEEEeccccCCHHHHHHHHHHHHHHHhCCCCCEeeEEEEEec-CCEEEEEEccCC
Confidence 47999999999999653 56789999997654 2345789999999999999999999999975 457899999999
Q ss_pred CCHHHHHhhCCCCCCHHHHHHHHHHHHHHHHHHhhcCCCCCeEecCCCCCCeeeCCCCcEEEeeeccccccCCCCCc-ee
Q 005040 508 GSLEKWLYSHNYFLDILQRLNIMIDVGSALEYLHHCHSSAPIIHCDLKPTNILLDENMVAHVSDFGISKLLGEGEDS-VI 586 (717)
Q Consensus 508 g~L~~~l~~~~~~~~~~~~~~i~~~i~~~l~~LH~~~~~~~ivH~dlk~~Nill~~~~~~kl~Dfgl~~~~~~~~~~-~~ 586 (717)
|+|.+++.... .+++..+..++.||+.||+||| +.+|+||||||+|||++.++.+||+|||+++.+...... ..
T Consensus 454 g~L~~~l~~~~-~l~~~~~~~i~~qi~~~L~yLH----~~~iiHrDLkp~NILl~~~~~~kL~DFGla~~~~~~~~~~~~ 528 (635)
T 4fl3_A 454 GPLNKYLQQNR-HVKDKNIIELVHQVSMGMKYLE----ESNFVHRDLAARNVLLVTQHYAKISDFGLSKALRADENYYKA 528 (635)
T ss_dssp EEHHHHHHHCT-TCCHHHHHHHHHHHHHHHHHHH----HTTCCCSCCSGGGEEEEETTEEEECCTTHHHHTTC-------
T ss_pred CCHHHHHhhCC-CCCHHHHHHHHHHHHHHHHHHH----HCCEeCCCCChHhEEEeCCCCEEEEEcCCccccccCcccccc
Confidence 99999998654 4899999999999999999999 678999999999999999999999999999877543321 22
Q ss_pred eeccccCccccCCCccCCCCcCcccchhhHHHHHHHHHh-CCCCCCccccCcchHHHHHHhhCCCchhhhccccchhhhh
Q 005040 587 QTMTMATIGYMAPEYGSEGIVSTKCDVYSYGVLLMETFT-EKKPTDEMFTGEMSLRRWVKESLPHRLTEVVDANLVREEQ 665 (717)
Q Consensus 587 ~~~~~~t~~y~aPE~~~~~~~~~~~Dvws~G~il~el~t-g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 665 (717)
.....+|+.|+|||++.+..++.++|||||||++|||++ |+.||.+.... .....+.....
T Consensus 529 ~~~~~~t~~y~APE~~~~~~~~~~sDvwSlGv~l~ellt~G~~Pf~~~~~~--~~~~~i~~~~~---------------- 590 (635)
T 4fl3_A 529 QTHGKWPVKWYAPECINYYKFSSKSDVWSFGVLMWEAFSYGQKPYRGMKGS--EVTAMLEKGER---------------- 590 (635)
T ss_dssp ------CGGGSCHHHHHHCCCCHHHHHHHHHHHHHHHHTTTCCSSTTCCHH--HHHHHHHTTCC----------------
T ss_pred ccCCCCceeeeChhhhcCCCCCcHHHHHHHHHHHHHHHhCCCCCCCCCCHH--HHHHHHHcCCC----------------
Confidence 233456889999999999999999999999999999998 99999764321 11111111100
Q ss_pred hhhhhHHHHHHHHHHHhhccCCCCCCCCCHHHHHHHHHHhHHhhc
Q 005040 666 AFSDKMDCLFSIMDLALDCCMDTPHKRIHMTDAAAKLRKIKAKFL 710 (717)
Q Consensus 666 ~~~~~~~~~~~l~~li~~cl~~~P~~Rpt~~ev~~~L~~~~~~~~ 710 (717)
...+..++.++.++|.+||+.||++||++.+|++.|+++.....
T Consensus 591 -~~~p~~~~~~l~~li~~cl~~dP~~RPs~~~l~~~L~~~~~~l~ 634 (635)
T 4fl3_A 591 -MGCPAGCPREMYDLMNLCWTYDVENRPGFAAVELRLRNYYYDVV 634 (635)
T ss_dssp -CCCCTTCCHHHHHHHHHHTCSSTTTSCCHHHHHHHHHHHHHHHC
T ss_pred -CCCCCCCCHHHHHHHHHHcCCCHhHCcCHHHHHHHHHHHHHHhc
Confidence 01112455678999999999999999999999999998876543
No 192
>3com_A Serine/threonine-protein kinase 4; MST1, STE20-like kinase, PSI, structural genomics, protein structure initiative; HET: TPO; 2.20A {Homo sapiens}
Probab=100.00 E-value=2.1e-39 Score=336.84 Aligned_cols=251 Identities=25% Similarity=0.321 Sum_probs=201.1
Q ss_pred HhccCCccccccccccEEEEEEEec-CCCeEEEEEechhhHHHHHHHHHHHHHHHhcCCCceeeEeeeeecCCeeEEEEE
Q 005040 425 ATDEFNECNLLGTGGFGSVYKGTLS-DGTNVAIKIFNLQLERAFRSFDSECEILRNVRHRNLLKILGSCSNLDFKALVLE 503 (717)
Q Consensus 425 ~~~~~~~~~~lg~G~~g~V~~~~~~-~~~~vavK~~~~~~~~~~~~~~~e~~~l~~l~hpniv~~~~~~~~~~~~~lv~e 503 (717)
..++|++.+.||+|+||.||+|... +|+.||+|++.... ..+.+.+|++++++++||||+++++++.+.+..++|||
T Consensus 27 ~~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~vaiK~~~~~~--~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~lv~e 104 (314)
T 3com_A 27 PEEVFDVLEKLGEGSYGSVYKAIHKETGQIVAIKQVPVES--DLQEIIKEISIMQQCDSPHVVKYYGSYFKNTDLWIVME 104 (314)
T ss_dssp ---CEEEEEECC----CEEEEEEETTTCCEEEEEEEETTS--CCHHHHHHHHHHHTCCCTTBCCEEEEEEETTEEEEEEE
T ss_pred chhhhhhheeeccCCCeEEEEEEECCCCCEEEEEecCchH--HHHHHHHHHHHHHhCCCCCCccEEEEEEeCCEEEEEee
Confidence 4578999999999999999999976 68999999987543 23568889999999999999999999999999999999
Q ss_pred ccCCCCHHHHHhhCCCCCCHHHHHHHHHHHHHHHHHHhhcCCCCCeEecCCCCCCeeeCCCCcEEEeeeccccccCCCCC
Q 005040 504 FMPNGSLEKWLYSHNYFLDILQRLNIMIDVGSALEYLHHCHSSAPIIHCDLKPTNILLDENMVAHVSDFGISKLLGEGED 583 (717)
Q Consensus 504 ~~~~g~L~~~l~~~~~~~~~~~~~~i~~~i~~~l~~LH~~~~~~~ivH~dlk~~Nill~~~~~~kl~Dfgl~~~~~~~~~ 583 (717)
|+++++|.+++......+++..+..++.|++.||.||| +.+++||||||+||+++.++.+||+|||++........
T Consensus 105 ~~~~~~L~~~~~~~~~~~~~~~~~~i~~~i~~~l~~lH----~~~i~H~dl~p~Nil~~~~~~~kl~dfg~~~~~~~~~~ 180 (314)
T 3com_A 105 YCGAGSVSDIIRLRNKTLTEDEIATILQSTLKGLEYLH----FMRKIHRDIKAGNILLNTEGHAKLADFGVAGQLTDTMA 180 (314)
T ss_dssp CCTTEEHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHH----HTTEECCCCSGGGEEECTTCCEEECCCTTCEECBTTBS
T ss_pred cCCCCCHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHH----hCCCcCCCcCHHHEEECCCCCEEEeecccchhhhhhcc
Confidence 99999999999865566999999999999999999999 67899999999999999999999999999987643221
Q ss_pred ceeeeccccCccccCCCccCCCCcCcccchhhHHHHHHHHHhCCCCCCccccCcchHHHHHHhhCCCchhhhccccchhh
Q 005040 584 SVIQTMTMATIGYMAPEYGSEGIVSTKCDVYSYGVLLMETFTEKKPTDEMFTGEMSLRRWVKESLPHRLTEVVDANLVRE 663 (717)
Q Consensus 584 ~~~~~~~~~t~~y~aPE~~~~~~~~~~~Dvws~G~il~el~tg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 663 (717)
......||+.|+|||...+..++.++||||||+++|||++|+.||...... ..........+..
T Consensus 181 --~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~g~~p~~~~~~~--~~~~~~~~~~~~~------------ 244 (314)
T 3com_A 181 --KRNTVIGTPFWMAPEVIQEIGYNCVADIWSLGITAIEMAEGKPPYADIHPM--RAIFMIPTNPPPT------------ 244 (314)
T ss_dssp --CBCCCCSCGGGCCHHHHSSSCBCTTHHHHHHHHHHHHHHHSSCTTTTSCHH--HHHHHHHHSCCCC------------
T ss_pred --ccCccCCCCCccChhhcCCCCCCccccHHHHHHHHHHHHhCCCCCCCCChH--HHHHHHhcCCCcc------------
Confidence 223456899999999999999999999999999999999999999753211 1111111111100
Q ss_pred hhhhhhhHHHHHHHHHHHhhccCCCCCCCCCHHHHHH
Q 005040 664 EQAFSDKMDCLFSIMDLALDCCMDTPHKRIHMTDAAA 700 (717)
Q Consensus 664 ~~~~~~~~~~~~~l~~li~~cl~~~P~~Rpt~~ev~~ 700 (717)
......++.++.+++.+||+.||++|||+.++++
T Consensus 245 ---~~~~~~~~~~l~~li~~~l~~dp~~Rpt~~~ll~ 278 (314)
T 3com_A 245 ---FRKPELWSDNFTDFVKQCLVKSPEQRATATQLLQ 278 (314)
T ss_dssp ---CSSGGGSCHHHHHHHHHHTCSCTTTSCCHHHHTT
T ss_pred ---cCCcccCCHHHHHHHHHHccCChhhCcCHHHHHh
Confidence 0111223456889999999999999999999986
No 193
>3byv_A Rhoptry kinase; malaria, transferase, structural genomics, structural genomics consortium, SGC; 1.80A {Toxoplasma gondii} PDB: 2w1z_A
Probab=100.00 E-value=2e-40 Score=353.34 Aligned_cols=247 Identities=14% Similarity=0.183 Sum_probs=191.7
Q ss_pred hccCCccccccccccEEEEEEEec-CCCeEEEEEechh---hHHHHHHHHHHH---HHHHhcCCCceeeEe-------ee
Q 005040 426 TDEFNECNLLGTGGFGSVYKGTLS-DGTNVAIKIFNLQ---LERAFRSFDSEC---EILRNVRHRNLLKIL-------GS 491 (717)
Q Consensus 426 ~~~~~~~~~lg~G~~g~V~~~~~~-~~~~vavK~~~~~---~~~~~~~~~~e~---~~l~~l~hpniv~~~-------~~ 491 (717)
.++|++.+.||+|+||.||+|... +|+.||||++... .....+.+.+|+ +.+++++||||++++ ++
T Consensus 72 ~~~y~~~~~lG~G~~g~V~~a~~~~~~~~vavK~~~~~~~~~~~~~~~~~~E~~~l~~l~~l~hpniv~~~~~~~~~~~~ 151 (377)
T 3byv_A 72 PRTLVRGTVLGQEDPYAYLEATDQETGESFEVHVPYFTERPPSNAIKQMKEEVLRLRLLRGIKNQKQAKVHLRFIFPFDL 151 (377)
T ss_dssp CEEEEEEEEEEEETTEEEEEEEC-CCCCEEEEEEEEECC-CCTTHHHHHHHHHHGGGGSTTCCSHHHHHHHHCBCCCSEE
T ss_pred CceEEEcceeecCCCEEEEEEEECCCCcEEEEEEEeeccccchHHHHHHHHHHHHHHhccccCCHHHHHHHhhhhhhhhh
Confidence 467889999999999999999964 7999999998733 234557788999 455555899999998 55
Q ss_pred eecCC-----------------eeEEEEEccCCCCHHHHHhhCCC------CCCHHHHHHHHHHHHHHHHHHhhcCCCCC
Q 005040 492 CSNLD-----------------FKALVLEFMPNGSLEKWLYSHNY------FLDILQRLNIMIDVGSALEYLHHCHSSAP 548 (717)
Q Consensus 492 ~~~~~-----------------~~~lv~e~~~~g~L~~~l~~~~~------~~~~~~~~~i~~~i~~~l~~LH~~~~~~~ 548 (717)
+.+.+ ..|+||||+ +|+|.+++...+. .+++..+..++.|++.||+||| +.+
T Consensus 152 ~~~~~~~~~~~~~~~~~~~~i~~~~lv~E~~-~g~L~~~l~~~~~~~~~~~~l~~~~~~~i~~qi~~aL~~LH----~~~ 226 (377)
T 3byv_A 152 VKDPQKKKMIRVRLDERDMWVLSRFFLYPRM-QSNLQTFGEVLLSHSSTHKSLVHHARLQLTLQVIRLLASLH----HYG 226 (377)
T ss_dssp EECTTSCSEEEC------CEEESEEEEEECC-SEEHHHHHHHHHHTTTTTHHHHHHHHHHHHHHHHHHHHHHH----HTT
T ss_pred hhccCCccccccccCCCceEEEEEEEEEecc-CCCHHHHHHhccccccccccccHHHHHHHHHHHHHHHHHHH----hCC
Confidence 55443 278999999 6899999985422 2335888899999999999999 678
Q ss_pred eEecCCCCCCeeeCCCCcEEEeeeccccccCCCCCceeeeccccCccccCCCccCCC-----------CcCcccchhhHH
Q 005040 549 IIHCDLKPTNILLDENMVAHVSDFGISKLLGEGEDSVIQTMTMATIGYMAPEYGSEG-----------IVSTKCDVYSYG 617 (717)
Q Consensus 549 ivH~dlk~~Nill~~~~~~kl~Dfgl~~~~~~~~~~~~~~~~~~t~~y~aPE~~~~~-----------~~~~~~Dvws~G 617 (717)
|+||||||+|||++.++.+||+|||+++.... ......| +.|+|||++.+. .++.++||||||
T Consensus 227 ivHrDikp~NIll~~~~~~kL~DFG~a~~~~~-----~~~~~~g-~~y~aPE~~~~~~~~~~~~~~~~~~~~~~DvwSlG 300 (377)
T 3byv_A 227 LVHTYLRPVDIVLDQRGGVFLTGFEHLVRDGA-----RVVSSVS-RGFEPPELEARRATISYHRDRRTLMTFSFDAWALG 300 (377)
T ss_dssp EECSCCCGGGEEECTTCCEEECCGGGCEETTC-----EEECCCC-TTCCCHHHHHHHTSTHHHHCCEEECCHHHHHHHHH
T ss_pred eecCCCCHHHEEEcCCCCEEEEechhheecCC-----cccCCCC-cCccChhhhcccccccccccccccCChhhhHHHHH
Confidence 99999999999999999999999999986432 2234467 999999998877 899999999999
Q ss_pred HHHHHHHhCCCCCCccccCcchHHHHHHhhCCCchhhhccccchhhhhhhhhhHHHHHHHHHHHhhccCCCCCCCCCHHH
Q 005040 618 VLLMETFTEKKPTDEMFTGEMSLRRWVKESLPHRLTEVVDANLVREEQAFSDKMDCLFSIMDLALDCCMDTPHKRIHMTD 697 (717)
Q Consensus 618 ~il~el~tg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~cl~~~P~~Rpt~~e 697 (717)
|++|||++|+.||....... ....+... ...++.++.+++.+||+.||++|||+.|
T Consensus 301 ~il~elltg~~Pf~~~~~~~-------------~~~~~~~~-----------~~~~~~~~~~li~~~L~~dp~~Rpt~~e 356 (377)
T 3byv_A 301 LVIYWIWCADLPITKDAALG-------------GSEWIFRS-----------CKNIPQPVRALLEGFLRYPKEDRLLPLQ 356 (377)
T ss_dssp HHHHHHHHSSCCC------C-------------CSGGGGSS-----------CCCCCHHHHHHHHHHTCSSGGGCCCHHH
T ss_pred HHHHHHHHCCCCCccccccc-------------chhhhhhh-----------ccCCCHHHHHHHHHHcCCCchhCCCHHH
Confidence 99999999999996532111 01111110 0133456889999999999999999999
Q ss_pred HHH--HHHHhHH
Q 005040 698 AAA--KLRKIKA 707 (717)
Q Consensus 698 v~~--~L~~~~~ 707 (717)
+++ .++++..
T Consensus 357 ~l~hp~f~~~~~ 368 (377)
T 3byv_A 357 AMETPEYEQLRT 368 (377)
T ss_dssp HHTSHHHHHHHH
T ss_pred HhhChHHHHHHH
Confidence 986 4555544
No 194
>3a7i_A MST3 kinase, serine/threonine kinase 24 (STE20 homolog, yeast); two-LOBE protein kinase fold, ATP-binding, nucleotid binding, transferase; HET: TPO ADE; 1.45A {Homo sapiens} PDB: 3a7g_A* 3a7h_A* 3a7f_A* 3a7j_A* 3ckw_A 3ckx_A* 3ggf_A* 2xik_A*
Probab=100.00 E-value=5.5e-39 Score=331.88 Aligned_cols=249 Identities=25% Similarity=0.358 Sum_probs=206.2
Q ss_pred hccCCccccccccccEEEEEEEec-CCCeEEEEEechhh-HHHHHHHHHHHHHHHhcCCCceeeEeeeeecCCeeEEEEE
Q 005040 426 TDEFNECNLLGTGGFGSVYKGTLS-DGTNVAIKIFNLQL-ERAFRSFDSECEILRNVRHRNLLKILGSCSNLDFKALVLE 503 (717)
Q Consensus 426 ~~~~~~~~~lg~G~~g~V~~~~~~-~~~~vavK~~~~~~-~~~~~~~~~e~~~l~~l~hpniv~~~~~~~~~~~~~lv~e 503 (717)
.+.|+..+.||+|+||.||+|... +++.||+|++.... ....+.+.+|+.+++.++||||+++++++.+....++|||
T Consensus 21 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~lv~e 100 (303)
T 3a7i_A 21 EELFTKLEKIGKGSFGEVFKGIDNRTQKVVAIKIIDLEEAEDEIEDIQQEITVLSQCDSPYVTKYYGSYLKDTKLWIIME 100 (303)
T ss_dssp GGTEEEEEEEEECSSSEEEEEEETTTCCEEEEEEEETTTCSTTHHHHHHHHHHHHHCCCTTBCCEEEEEEETTEEEEEEE
T ss_pred HHHHHHhhhhcccCCeEEEEEEECCCCcEEEEEEecccccHHHHHHHHHHHHHHHhCCCCCEeEEEEEEecCCeEEEEEE
Confidence 357899999999999999999865 78999999997553 3345778899999999999999999999999999999999
Q ss_pred ccCCCCHHHHHhhCCCCCCHHHHHHHHHHHHHHHHHHhhcCCCCCeEecCCCCCCeeeCCCCcEEEeeeccccccCCCCC
Q 005040 504 FMPNGSLEKWLYSHNYFLDILQRLNIMIDVGSALEYLHHCHSSAPIIHCDLKPTNILLDENMVAHVSDFGISKLLGEGED 583 (717)
Q Consensus 504 ~~~~g~L~~~l~~~~~~~~~~~~~~i~~~i~~~l~~LH~~~~~~~ivH~dlk~~Nill~~~~~~kl~Dfgl~~~~~~~~~ 583 (717)
|+++++|.+++... .+++..+..++.|++.||.||| +.+|+||||||+||+++.++.+||+|||++........
T Consensus 101 ~~~~~~L~~~~~~~--~~~~~~~~~~~~qi~~~l~~lH----~~~i~H~dl~p~Nil~~~~~~~kl~Dfg~~~~~~~~~~ 174 (303)
T 3a7i_A 101 YLGGGSALDLLEPG--PLDETQIATILREILKGLDYLH----SEKKIHRDIKAANVLLSEHGEVKLADFGVAGQLTDTQI 174 (303)
T ss_dssp CCTTEEHHHHHTTS--CCCHHHHHHHHHHHHHHHHHHH----HTTEECCCCSGGGEEECTTSCEEECCCTTCEECBTTBC
T ss_pred eCCCCcHHHHHhcC--CCCHHHHHHHHHHHHHHHHHHH----HCCCccCCCChheEEECCCCCEEEeecccceecCcccc
Confidence 99999999999764 4899999999999999999999 67899999999999999999999999999987654321
Q ss_pred ceeeeccccCccccCCCccCCCCcCcccchhhHHHHHHHHHhCCCCCCccccCcchHHHHHHhhCCCchhhhccccchhh
Q 005040 584 SVIQTMTMATIGYMAPEYGSEGIVSTKCDVYSYGVLLMETFTEKKPTDEMFTGEMSLRRWVKESLPHRLTEVVDANLVRE 663 (717)
Q Consensus 584 ~~~~~~~~~t~~y~aPE~~~~~~~~~~~Dvws~G~il~el~tg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 663 (717)
......||+.|+|||++.+..++.++||||||+++|||++|+.||...... .....+....+.. +
T Consensus 175 --~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~g~~p~~~~~~~--~~~~~~~~~~~~~--------~--- 239 (303)
T 3a7i_A 175 --KRNTFVGTPFWMAPEVIKQSAYDSKADIWSLGITAIELARGEPPHSELHPM--KVLFLIPKNNPPT--------L--- 239 (303)
T ss_dssp --CBCCCCSCGGGCCHHHHTTCCBCTHHHHHHHHHHHHHHHHSSCTTTTSCHH--HHHHHHHHSCCCC--------C---
T ss_pred --ccCccCCCcCccCHHHHhcCCCCchhhhHHHHHHHHHHccCCCCCCCcCHH--HHHHHhhcCCCCC--------C---
Confidence 223456899999999999999999999999999999999999999753221 1111111111110 0
Q ss_pred hhhhhhhHHHHHHHHHHHhhccCCCCCCCCCHHHHHHH
Q 005040 664 EQAFSDKMDCLFSIMDLALDCCMDTPHKRIHMTDAAAK 701 (717)
Q Consensus 664 ~~~~~~~~~~~~~l~~li~~cl~~~P~~Rpt~~ev~~~ 701 (717)
...++..+.+++.+||+.||++|||+.|+++.
T Consensus 240 ------~~~~~~~l~~li~~~l~~dp~~Rps~~~ll~~ 271 (303)
T 3a7i_A 240 ------EGNYSKPLKEFVEACLNKEPSFRPTAKELLKH 271 (303)
T ss_dssp ------CSSCCHHHHHHHHHHCCSSGGGSCCHHHHTTC
T ss_pred ------ccccCHHHHHHHHHHcCCChhhCcCHHHHhhC
Confidence 11234568899999999999999999999874
No 195
>3sv0_A Casein kinase I-like; typical kinase domain fold, cytosol, transferase; 2.00A {Oryza sativa japonica group}
Probab=100.00 E-value=5e-39 Score=350.32 Aligned_cols=263 Identities=19% Similarity=0.227 Sum_probs=209.9
Q ss_pred hccCCccccccccccEEEEEEEe-cCCCeEEEEEechhhHHHHHHHHHHHHHHHhcCC-CceeeEeeeeecCCeeEEEEE
Q 005040 426 TDEFNECNLLGTGGFGSVYKGTL-SDGTNVAIKIFNLQLERAFRSFDSECEILRNVRH-RNLLKILGSCSNLDFKALVLE 503 (717)
Q Consensus 426 ~~~~~~~~~lg~G~~g~V~~~~~-~~~~~vavK~~~~~~~~~~~~~~~e~~~l~~l~h-pniv~~~~~~~~~~~~~lv~e 503 (717)
.++|++.+.||+|+||.||+|.+ .+++.||||++...... ..+..|+++++.++| +++..+..++.+.+..++|||
T Consensus 6 ~~~y~i~~~LG~G~fG~Vy~a~~~~~~~~vAvK~~~~~~~~--~~~~~E~~il~~L~~~~~i~~i~~~~~~~~~~~lvme 83 (483)
T 3sv0_A 6 GNKFRLGRKIGSGSFGEIYLGTNIQTNEEVAIKLENVKTKH--PQLLYESKIYRILQGGTGIPNVRWFGVEGDYNVLVMD 83 (483)
T ss_dssp TTTEECCCCCEECSSCEEEEEEETTTCCEEEEEEEETTCSS--CCHHHHHHHHHHTTTSTTCCCEEEEEEETTEEEEEEE
T ss_pred CCcEEEEEEEeeCCCEEEEEEEECCCCcEEEEEEecccccc--HHHHHHHHHHHHhcCCCCCCeEEEEEeeCCEEEEEEE
Confidence 46899999999999999999996 47999999987654322 357789999999976 566666666777888899999
Q ss_pred ccCCCCHHHHHhhCCCCCCHHHHHHHHHHHHHHHHHHhhcCCCCCeEecCCCCCCeee---CCCCcEEEeeeccccccCC
Q 005040 504 FMPNGSLEKWLYSHNYFLDILQRLNIMIDVGSALEYLHHCHSSAPIIHCDLKPTNILL---DENMVAHVSDFGISKLLGE 580 (717)
Q Consensus 504 ~~~~g~L~~~l~~~~~~~~~~~~~~i~~~i~~~l~~LH~~~~~~~ivH~dlk~~Nill---~~~~~~kl~Dfgl~~~~~~ 580 (717)
|+ +++|.+++......+++..++.++.||+.||.||| +.+|+||||||+|||+ +.++.+||+|||+++.+..
T Consensus 84 ~~-g~sL~~ll~~~~~~l~~~~~~~i~~qi~~aL~yLH----~~gIvHrDIKP~NILl~~~~~~~~vkL~DFGla~~~~~ 158 (483)
T 3sv0_A 84 LL-GPSLEDLFNFCSRKLSLKTVLMLADQMINRVEFVH----SKSFLHRDIKPDNFLMGLGRRANQVYIIDFGLAKKYRD 158 (483)
T ss_dssp CC-CCBHHHHHHHTTTCCCHHHHHHHHHHHHHHHHHHH----HTTEECCCCCGGGEEECCGGGTTCEEECCCTTCEECBC
T ss_pred CC-CCCHHHHHHhhcCCCCHHHHHHHHHHHHHHHHHHH----HCCEeecccCcceEEEecCCCCCeEEEEeCCcceeccC
Confidence 99 89999999976667999999999999999999999 6789999999999999 6889999999999987754
Q ss_pred CCCce-----eeeccccCccccCCCccCCCCcCcccchhhHHHHHHHHHhCCCCCCccccCcch--HHHHHHhhCCCchh
Q 005040 581 GEDSV-----IQTMTMATIGYMAPEYGSEGIVSTKCDVYSYGVLLMETFTEKKPTDEMFTGEMS--LRRWVKESLPHRLT 653 (717)
Q Consensus 581 ~~~~~-----~~~~~~~t~~y~aPE~~~~~~~~~~~Dvws~G~il~el~tg~~p~~~~~~~~~~--~~~~~~~~~~~~~~ 653 (717)
..... ......||+.|+|||++.+..++.++|||||||++|||++|+.||......... +.............
T Consensus 159 ~~~~~~~~~~~~~~~~gt~~Y~aPE~~~~~~~s~~sDvwSlGvil~elltG~~Pf~~~~~~~~~~~~~~i~~~~~~~~~~ 238 (483)
T 3sv0_A 159 TSTHQHIPYRENKNLTGTARYASVNTHLGIEQSRRDDLESLGYVLMYFLRGSLPWQGLKAGTKKQKYEKISEKKVATSIE 238 (483)
T ss_dssp TTTCCBCCCCCCCCCCSCTTTCCHHHHTTCCCCHHHHHHHHHHHHHHHHHSSCTTSSCCCSSHHHHHHHHHHHHHHSCHH
T ss_pred CccccccccccccccCCCccccCHHHhcCCCCChHHHHHHHHHHHHHHHhCCCCCccccchhHHHHHHHHhhccccccHH
Confidence 43211 122557899999999999999999999999999999999999999764332111 11111110000000
Q ss_pred hhccccchhhhhhhhhhHHHHHHHHHHHhhccCCCCCCCCCHHHHHHHHHHhHHhh
Q 005040 654 EVVDANLVREEQAFSDKMDCLFSIMDLALDCCMDTPHKRIHMTDAAAKLRKIKAKF 709 (717)
Q Consensus 654 ~~~~~~~~~~~~~~~~~~~~~~~l~~li~~cl~~~P~~Rpt~~ev~~~L~~~~~~~ 709 (717)
.....++.++.+++..||+.+|++||++.++++.|+++....
T Consensus 239 --------------~l~~~~p~~l~~li~~cl~~dP~~RPs~~el~~~L~~l~~~~ 280 (483)
T 3sv0_A 239 --------------ALCRGYPTEFASYFHYCRSLRFDDKPDYSYLKRLFRDLFIRE 280 (483)
T ss_dssp --------------HHHTTSCHHHHHHHHHHHTCCTTCCCCHHHHHHHHHHHHHHT
T ss_pred --------------HHhcCCcHHHHHHHHHHhcCChhhCcCHHHHHHHHHHHHHHc
Confidence 011234567899999999999999999999999999986643
No 196
>2a19_B Interferon-induced, double-stranded RNA-activated kinase; transferase, protein biosynthesis, protein synthesis transferase complex; HET: TPO ANP; 2.50A {Homo sapiens} PDB: 2a1a_B*
Probab=100.00 E-value=8.1e-40 Score=334.82 Aligned_cols=250 Identities=24% Similarity=0.381 Sum_probs=204.9
Q ss_pred HhccCCccccccccccEEEEEEEec-CCCeEEEEEechhhHHHHHHHHHHHHHHHhcCCCceeeEeeeeec---------
Q 005040 425 ATDEFNECNLLGTGGFGSVYKGTLS-DGTNVAIKIFNLQLERAFRSFDSECEILRNVRHRNLLKILGSCSN--------- 494 (717)
Q Consensus 425 ~~~~~~~~~~lg~G~~g~V~~~~~~-~~~~vavK~~~~~~~~~~~~~~~e~~~l~~l~hpniv~~~~~~~~--------- 494 (717)
...+|+..+.||+|+||.||+|... +++.||+|++.... +.+.+|++++++++||||+++++++..
T Consensus 9 ~~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~----~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~~~~~ 84 (284)
T 2a19_B 9 FGMDFKEIELIGSGGFGQVFKAKHRIDGKTYVIKRVKYNN----EKAEREVKALAKLDHVNIVHYNGCWDGFDYDPETSS 84 (284)
T ss_dssp HHHHEEEEEEEECSSSCCEEEEEETTTCCEEEEEEEECCS----GGGHHHHHHHHHCCCTTBCCEEEEEEEEEEC-----
T ss_pred hccccceeeeeccCCceEEEEEEEcCCCeEEEEEEecccc----HHHHHHHHHHHhCCCCCEEEEeeeEeccccCccccc
Confidence 4578999999999999999999986 79999999987543 345679999999999999999998854
Q ss_pred -------CCeeEEEEEccCCCCHHHHHhhC-CCCCCHHHHHHHHHHHHHHHHHHhhcCCCCCeEecCCCCCCeeeCCCCc
Q 005040 495 -------LDFKALVLEFMPNGSLEKWLYSH-NYFLDILQRLNIMIDVGSALEYLHHCHSSAPIIHCDLKPTNILLDENMV 566 (717)
Q Consensus 495 -------~~~~~lv~e~~~~g~L~~~l~~~-~~~~~~~~~~~i~~~i~~~l~~LH~~~~~~~ivH~dlk~~Nill~~~~~ 566 (717)
....++||||+++|+|.+++... ...+++..+..++.|++.||.||| +.+|+||||||+||+++.++.
T Consensus 85 ~~~~~~~~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~i~~qi~~~l~~lH----~~~i~H~dlkp~Nil~~~~~~ 160 (284)
T 2a19_B 85 KNSSRSKTKCLFIQMEFCDKGTLEQWIEKRRGEKLDKVLALELFEQITKGVDYIH----SKKLINRDLKPSNIFLVDTKQ 160 (284)
T ss_dssp ----CCEEEEEEEEECCCCSCBHHHHHHHGGGSCCCHHHHHHHHHHHHHHHHHHH----HTTEECSCCSGGGEEEEETTE
T ss_pred ccccccCcceEEEEEeccCCCCHHHHHhhccCCCCCHHHHHHHHHHHHHHHHHHH----hCCeeeccCCHHHEEEcCCCC
Confidence 34579999999999999999854 345899999999999999999999 678999999999999999999
Q ss_pred EEEeeeccccccCCCCCceeeeccccCccccCCCccCCCCcCcccchhhHHHHHHHHHhCCCCCCccccCcchHHHHHHh
Q 005040 567 AHVSDFGISKLLGEGEDSVIQTMTMATIGYMAPEYGSEGIVSTKCDVYSYGVLLMETFTEKKPTDEMFTGEMSLRRWVKE 646 (717)
Q Consensus 567 ~kl~Dfgl~~~~~~~~~~~~~~~~~~t~~y~aPE~~~~~~~~~~~Dvws~G~il~el~tg~~p~~~~~~~~~~~~~~~~~ 646 (717)
+||+|||++........ .....+|+.|+|||++.+..++.++||||||+++|||++|..|+... ..+...
T Consensus 161 ~kl~Dfg~~~~~~~~~~---~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~~~~~~~~~-------~~~~~~ 230 (284)
T 2a19_B 161 VKIGDFGLVTSLKNDGK---RTRSKGTLRYMSPEQISSQDYGKEVDLYALGLILAELLHVCDTAFET-------SKFFTD 230 (284)
T ss_dssp EEECCCTTCEESSCCSC---CCCCCSCCTTSCHHHHHCSCCCTHHHHHHHHHHHHHHHSCCSSHHHH-------HHHHHH
T ss_pred EEECcchhheecccccc---ccccCCcccccChhhhccCCCcchhhhHHHHHHHHHHHhcCCcchhH-------HHHHHH
Confidence 99999999987654322 23346899999999998889999999999999999999999986421 111111
Q ss_pred hCCCchhhhccccchhhhhhhhhhHHHHHHHHHHHhhccCCCCCCCCCHHHHHHHHHHhHHhh
Q 005040 647 SLPHRLTEVVDANLVREEQAFSDKMDCLFSIMDLALDCCMDTPHKRIHMTDAAAKLRKIKAKF 709 (717)
Q Consensus 647 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~cl~~~P~~Rpt~~ev~~~L~~~~~~~ 709 (717)
... ..+. ..++.++.+++.+||+.||++|||+.|+++.|..+.+.-
T Consensus 231 ~~~--------~~~~---------~~~~~~~~~li~~~l~~dp~~Rps~~e~l~~l~~~~~~~ 276 (284)
T 2a19_B 231 LRD--------GIIS---------DIFDKKEKTLLQKLLSKKPEDRPNTSEILRTLTVWKKSP 276 (284)
T ss_dssp HHT--------TCCC---------TTSCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHTC--
T ss_pred hhc--------cccc---------ccCCHHHHHHHHHHccCChhhCcCHHHHHHHHHHHhhCC
Confidence 000 0000 123355789999999999999999999999999886543
No 197
>3n9x_A Phosphotransferase; malaria kinase, structural genomics, structural genomics CON SGC; 2.05A {Plasmodium berghei} PDB: 3nie_A*
Probab=100.00 E-value=3.4e-39 Score=349.70 Aligned_cols=200 Identities=26% Similarity=0.346 Sum_probs=167.7
Q ss_pred hccCCccccccccccEEEEEEEec-CCCeEEEEEechhh--HHHHHHHHHHHHHHHhcCCCceeeEeeeeecC-----Ce
Q 005040 426 TDEFNECNLLGTGGFGSVYKGTLS-DGTNVAIKIFNLQL--ERAFRSFDSECEILRNVRHRNLLKILGSCSNL-----DF 497 (717)
Q Consensus 426 ~~~~~~~~~lg~G~~g~V~~~~~~-~~~~vavK~~~~~~--~~~~~~~~~e~~~l~~l~hpniv~~~~~~~~~-----~~ 497 (717)
.++|++.+.||+|+||.||+|... +++.||||++.... ....+.+.+|++++++++||||+++++++... ..
T Consensus 25 ~~~y~~~~~lG~G~~g~V~~a~~~~~~~~vAiK~~~~~~~~~~~~~~~~~E~~~l~~l~h~nIv~l~~~~~~~~~~~~~~ 104 (432)
T 3n9x_A 25 PDNYIIKHLIGRGSYGYVYLAYDKNTEKNVAIKKVNRMFEDLIDCKRILREITILNRLKSDYIIRLYDLIIPDDLLKFDE 104 (432)
T ss_dssp CTTEEEEEEEEEETTEEEEEEEETTTTEEEEEEEECSTTTSHHHHHHHHHHHHHHHHCCCTTBCCEEEECCCSCTTTCCC
T ss_pred cCCEEEEEEEeecCCEEEEEEEECCCCcEEEEEEeCchhcChHHHHHHHHHHHHHHHcCCCCcceEEEEEecCCCCcCCe
Confidence 468999999999999999999975 78899999996532 34456788999999999999999999998665 57
Q ss_pred eEEEEEccCCCCHHHHHhhCCCCCCHHHHHHHHHHHHHHHHHHhhcCCCCCeEecCCCCCCeeeCCCCcEEEeeeccccc
Q 005040 498 KALVLEFMPNGSLEKWLYSHNYFLDILQRLNIMIDVGSALEYLHHCHSSAPIIHCDLKPTNILLDENMVAHVSDFGISKL 577 (717)
Q Consensus 498 ~~lv~e~~~~g~L~~~l~~~~~~~~~~~~~~i~~~i~~~l~~LH~~~~~~~ivH~dlk~~Nill~~~~~~kl~Dfgl~~~ 577 (717)
.|+||||++ |+|.+++.... .+++..+..++.||+.||+||| +.+|+||||||+|||++.++.+||+|||+++.
T Consensus 105 ~~lv~e~~~-~~L~~~~~~~~-~l~~~~~~~i~~qil~aL~~LH----~~givHrDlkp~NILl~~~~~~kL~DFGla~~ 178 (432)
T 3n9x_A 105 LYIVLEIAD-SDLKKLFKTPI-FLTEEHIKTILYNLLLGENFIH----ESGIIHRDLKPANCLLNQDCSVKVCDFGLART 178 (432)
T ss_dssp EEEEEECCS-EEHHHHHHSSC-CCCHHHHHHHHHHHHHHHHHHH----HTTEECCCCCGGGEEECTTCCEEECCCTTCEE
T ss_pred EEEEEecCC-cCHHHHHhccC-CCCHHHHHHHHHHHHHHHHHHH----HCCCCCCCCCHHHeEECCCCCEEEccCCCccc
Confidence 899999996 59999998653 4899999999999999999999 67899999999999999999999999999987
Q ss_pred cCCCCCc--------------------eeeeccccCccccCCCcc-CCCCcCcccchhhHHHHHHHHHhCCCCCC
Q 005040 578 LGEGEDS--------------------VIQTMTMATIGYMAPEYG-SEGIVSTKCDVYSYGVLLMETFTEKKPTD 631 (717)
Q Consensus 578 ~~~~~~~--------------------~~~~~~~~t~~y~aPE~~-~~~~~~~~~Dvws~G~il~el~tg~~p~~ 631 (717)
....... ......+||++|+|||++ ....++.++||||+||++|||++|..||.
T Consensus 179 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~Y~APE~~~~~~~~~~~~DiwSlG~il~ell~g~~p~~ 253 (432)
T 3n9x_A 179 INSEKDTNIVNDLEENEEPGPHNKNLKKQLTSHVVTRWYRAPELILLQENYTKSIDIWSTGCIFAELLNMLQSHI 253 (432)
T ss_dssp C-------------------------------CCCCCTTCCHHHHTTCSCCCTHHHHHHHHHHHHHHHTTCTTTC
T ss_pred ccccccccccccccccccccccccchhccccCCCCCccccCHHHHhcCCCCCcccccchHHHHHHHHHhcccccc
Confidence 6543221 112456789999999975 66779999999999999999998666554
No 198
>2clq_A Mitogen-activated protein kinase kinase kinase 5; transferase, metal-binding, apoptosis; HET: STU; 2.3A {Homo sapiens}
Probab=100.00 E-value=5.2e-39 Score=330.79 Aligned_cols=251 Identities=27% Similarity=0.357 Sum_probs=198.0
Q ss_pred ccCCccccccccccEEEEEEEec-CCCeEEEEEechhhHHHHHHHHHHHHHHHhcCCCceeeEeeeeecCCeeEEEEEcc
Q 005040 427 DEFNECNLLGTGGFGSVYKGTLS-DGTNVAIKIFNLQLERAFRSFDSECEILRNVRHRNLLKILGSCSNLDFKALVLEFM 505 (717)
Q Consensus 427 ~~~~~~~~lg~G~~g~V~~~~~~-~~~~vavK~~~~~~~~~~~~~~~e~~~l~~l~hpniv~~~~~~~~~~~~~lv~e~~ 505 (717)
++|.....||+|+||.||+|... +++.||+|++........+.+.+|+.+++.++||||+++++++.+.+..++||||+
T Consensus 22 ~~~~~~~~lg~G~~g~Vy~~~~~~~~~~vaiK~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~~~lv~e~~ 101 (295)
T 2clq_A 22 DENGDRVVLGKGTYGIVYAGRDLSNQVRIAIKEIPERDSRYSQPLHEEIALHKHLKHKNIVQYLGSFSENGFIKIFMEQV 101 (295)
T ss_dssp CTTSSBCEEEECSSSEEEEEEETTTCCEEEEEEEECCCC---HHHHHHHHHHHTCCCTTBCCEEEEEEETTEEEEEEECC
T ss_pred cCCCCcEEEeecCcEEEEEEEECCCCeEEEEEEccCCchHHHHHHHHHHHHHHhCCCCCEeeEeeEEEeCCcEEEEEEeC
Confidence 34555668999999999999974 78899999987665555677889999999999999999999999999999999999
Q ss_pred CCCCHHHHHhhCC--CCCCHHHHHHHHHHHHHHHHHHhhcCCCCCeEecCCCCCCeeeCC-CCcEEEeeeccccccCCCC
Q 005040 506 PNGSLEKWLYSHN--YFLDILQRLNIMIDVGSALEYLHHCHSSAPIIHCDLKPTNILLDE-NMVAHVSDFGISKLLGEGE 582 (717)
Q Consensus 506 ~~g~L~~~l~~~~--~~~~~~~~~~i~~~i~~~l~~LH~~~~~~~ivH~dlk~~Nill~~-~~~~kl~Dfgl~~~~~~~~ 582 (717)
++++|.+++.... ...++..+..++.|++.||.||| +.+|+||||||+||+++. ++.+||+|||++.......
T Consensus 102 ~~~~L~~~l~~~~~~~~~~~~~~~~~~~qi~~~l~~lH----~~~i~H~dl~p~Nil~~~~~~~~kl~Dfg~~~~~~~~~ 177 (295)
T 2clq_A 102 PGGSLSALLRSKWGPLKDNEQTIGFYTKQILEGLKYLH----DNQIVHRDIKGDNVLINTYSGVLKISDFGTSKRLAGIN 177 (295)
T ss_dssp SEEEHHHHHHHTTCCCTTCHHHHHHHHHHHHHHHHHHH----HTTEECCCCSGGGEEEETTTCCEEECCTTTCEESCC--
T ss_pred CCCCHHHHHHhhccCCCccHHHHHHHHHHHHHHHHHHH----hCCEEccCCChhhEEEECCCCCEEEeecccccccCCCC
Confidence 9999999998653 34678899999999999999999 678999999999999987 8999999999998764322
Q ss_pred CceeeeccccCccccCCCccCCCC--cCcccchhhHHHHHHHHHhCCCCCCccccCcchHHHHHHhhCCCchhhhccccc
Q 005040 583 DSVIQTMTMATIGYMAPEYGSEGI--VSTKCDVYSYGVLLMETFTEKKPTDEMFTGEMSLRRWVKESLPHRLTEVVDANL 660 (717)
Q Consensus 583 ~~~~~~~~~~t~~y~aPE~~~~~~--~~~~~Dvws~G~il~el~tg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 660 (717)
. ......||+.|+|||++.+.. ++.++||||||+++|||++|+.||................... +.+
T Consensus 178 ~--~~~~~~~~~~y~aPE~~~~~~~~~~~~~Di~slG~il~~l~~g~~pf~~~~~~~~~~~~~~~~~~~--------~~~ 247 (295)
T 2clq_A 178 P--CTETFTGTLQYMAPEIIDKGPRGYGKAADIWSLGCTIIEMATGKPPFYELGEPQAAMFKVGMFKVH--------PEI 247 (295)
T ss_dssp -----CCCCCCGGGCCHHHHHHGGGGCSHHHHHHHHHHHHHHHHHTSCTTGGGSSHHHHHHHHHHHCCC--------CCC
T ss_pred C--cccccCCCccccChhhhcCCCCCCCcHHHHHHHHHHHHHHHHCCCCccCCCchhHHHHhhcccccc--------ccc
Confidence 1 123456899999999876643 7899999999999999999999996532211111110000000 000
Q ss_pred hhhhhhhhhhHHHHHHHHHHHhhccCCCCCCCCCHHHHHH
Q 005040 661 VREEQAFSDKMDCLFSIMDLALDCCMDTPHKRIHMTDAAA 700 (717)
Q Consensus 661 ~~~~~~~~~~~~~~~~l~~li~~cl~~~P~~Rpt~~ev~~ 700 (717)
+..++.++.+++.+||+.||++|||+.|+++
T Consensus 248 ---------~~~~~~~~~~li~~~l~~dp~~Rps~~~ll~ 278 (295)
T 2clq_A 248 ---------PESMSAEAKAFILKCFEPDPDKRACANDLLV 278 (295)
T ss_dssp ---------CTTSCHHHHHHHHHTTCSSTTTSCCHHHHHT
T ss_pred ---------cccCCHHHHHHHHHHccCChhhCCCHHHHhc
Confidence 1134456889999999999999999999975
No 199
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=100.00 E-value=5.3e-38 Score=369.08 Aligned_cols=334 Identities=23% Similarity=0.248 Sum_probs=176.0
Q ss_pred CccccCCCCCcEEECCCCcceecCCcCCCCCCCCCEEEcccccccCccCCcccccccccccCccCCcEEeccCCCCcccC
Q 005040 5 PNSITNATKLIGLDLGLNSFSGHIPNTFGNLRHLSVLSLMMNNLTTESSSADQWSFLSSLTNCRNLANLALASNPLGGIL 84 (717)
Q Consensus 5 P~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~l~~l~~L~~L~L~~N~l~~~~ 84 (717)
|..|.++++|++|+|++|.|++..|..|.++++|++|+|++|.+++..+.. ..|.++++|++|+|++|.+++..
T Consensus 66 ~~~f~~L~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~------~~~~~L~~L~~L~Ls~N~l~~~~ 139 (844)
T 3j0a_A 66 KEAFRNLPNLRILDLGSSKIYFLHPDAFQGLFHLFELRLYFCGLSDAVLKD------GYFRNLKALTRLDLSKNQIRSLY 139 (844)
T ss_dssp TTTTSSCTTCCEEECTTCCCCEECTTSSCSCSSCCCEECTTCCCSSCCSTT------CCCSSCSSCCEEEEESCCCCCCC
T ss_pred HHHhcCCCCCCEEECCCCcCcccCHhHccCCcccCEeeCcCCCCCcccccC------ccccccCCCCEEECCCCcccccc
Confidence 556666666666666666666666666666666666666666666522111 12566777777777777776554
Q ss_pred C-cchhccccccceeeecCCcceecCCccccCC-----------------------------------------------
Q 005040 85 P-PLIGNFSASLQNIYAFECKLGGSIPKEIGNL----------------------------------------------- 116 (717)
Q Consensus 85 ~-~~~~~l~~~L~~L~l~~n~l~~~~~~~~~~l----------------------------------------------- 116 (717)
+ ..|.++ ++|++|++++|.+.+..+..+..+
T Consensus 140 ~~~~~~~L-~~L~~L~Ls~N~i~~~~~~~l~~l~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~ 218 (844)
T 3j0a_A 140 LHPSFGKL-NSLKSIDFSSNQIFLVCEHELEPLQGKTLSFFSLAANSLYSRVSVDWGKCMNPFRNMVLEILDVSGNGWTV 218 (844)
T ss_dssp CCGGGGTC-SSCCEEEEESSCCCCCCSGGGHHHHHCSSCCCEECCSBSCCCCCCCCCSSSCTTTTCCBSEEBCSSCCSST
T ss_pred cchhHhhC-CCCCEEECCCCcCCeeCHHHcccccCCccceEECCCCccccccccchhhcCCccccCceeEEecCCCcCch
Confidence 4 355555 567777777776655444333221
Q ss_pred -----------------------------------------------CCCcEEEccCCCCcccCCccccccCCCCEEecc
Q 005040 117 -----------------------------------------------RGLIVLSLGFNDLNGTIPTSIGTLQQLQGFYVP 149 (717)
Q Consensus 117 -----------------------------------------------~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~ 149 (717)
++|+.|+|++|.+.+..+..|..+++|+.|+|+
T Consensus 219 ~~~~~~~~~l~~~~l~~L~l~~~~~~~~~~~~~l~~~~~~~f~~l~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~ 298 (844)
T 3j0a_A 219 DITGNFSNAISKSQAFSLILAHHIMGAGFGFHNIKDPDQNTFAGLARSSVRHLDLSHGFVFSLNSRVFETLKDLKVLNLA 298 (844)
T ss_dssp TTTSGGGGTSCSCCBSEEECCSSCCBCSSSCSSSTTGGGTTTTTTTTSCCCEEECTTCCCCEECSCCSSSCCCCCEEEEE
T ss_pred hHHHHHHhhcCcccccceecccccccccccccccCCCChhhhhccccCCccEEECCCCcccccChhhhhcCCCCCEEECC
Confidence 123333333333333333334444444444444
Q ss_pred CCcccccCCccccCCCCCCEEeccCCcCcccCCccccCCCCCCeEEecCccccCCCChhhhcccCCCeEEccCCcCcccC
Q 005040 150 ENNLQGYVPHDLCHLERLNILNLSGNKLSGAIPQCLASLTSLRSLYLQSNKLSSSLPSSLWSLEYILRINLSSNSLKGTL 229 (717)
Q Consensus 150 ~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~ 229 (717)
+|++++..+..|.++++|++|+|++|.+++..+..|..+++|+.|+|++|++.+..+..|..+++|++|+|++|.+++..
T Consensus 299 ~n~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~i~ 378 (844)
T 3j0a_A 299 YNKINKIADEAFYGLDNLQVLNLSYNLLGELYSSNFYGLPKVAYIDLQKNHIAIIQDQTFKFLEKLQTLDLRDNALTTIH 378 (844)
T ss_dssp SCCCCEECTTTTTTCSSCCEEEEESCCCSCCCSCSCSSCTTCCEEECCSCCCCCCCSSCSCSCCCCCEEEEETCCSCCCS
T ss_pred CCcCCCCChHHhcCCCCCCEEECCCCCCCccCHHHhcCCCCCCEEECCCCCCCccChhhhcCCCCCCEEECCCCCCCccc
Confidence 44444444444444444444444444444444444444444444444444444444444444444444444444443210
Q ss_pred C------------------c----------------------cccCCCCCCeEEccCCCCCCCC----------------
Q 005040 230 P------------------S----------------------NIQKLNVLIDLDLSRNQLSSDI---------------- 253 (717)
Q Consensus 230 ~------------------~----------------------~~~~l~~L~~L~l~~N~l~~~~---------------- 253 (717)
. . .+..+++|+.|+|++|.+++..
T Consensus 379 ~~~~L~~L~l~~N~l~~l~~~~~~l~~L~ls~N~l~~l~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~L~~L~L 458 (844)
T 3j0a_A 379 FIPSIPDIFLSGNKLVTLPKINLTANLIHLSENRLENLDILYFLLRVPHLQILILNQNRFSSCSGDQTPSENPSLEQLFL 458 (844)
T ss_dssp SCCSCSEEEEESCCCCCCCCCCTTCCEEECCSCCCCSSTTHHHHTTCTTCCEEEEESCCCCCCCSSSSSCSCTTCCBCEE
T ss_pred CCCCcchhccCCCCcccccccccccceeecccCccccCchhhhhhcCCccceeeCCCCcccccccccccccCCccccccC
Confidence 0 0 0113334444444444443211
Q ss_pred --------------cccccCCcccccccccCccccCCCCccccccCccceEeccCCCCCCCCcccccccccccEEEccCC
Q 005040 254 --------------PSTIGTLKNLETLSLAGNQFQGPIPESVGNLISLESLDFSNNNLSGKIPKSLEALSHLKQFNVSHN 319 (717)
Q Consensus 254 --------------~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~~~~~~~~~~l~~L~~L~l~~N 319 (717)
+..|..+++|+.|+|++|++++..+..|.++++|+.|+|++|++++..+..+. ++|+.|+|++|
T Consensus 459 s~N~l~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~--~~L~~L~Ls~N 536 (844)
T 3j0a_A 459 GENMLQLAWETELCWDVFEGLSHLQVLYLNHNYLNSLPPGVFSHLTALRGLSLNSNRLTVLSHNDLP--ANLEILDISRN 536 (844)
T ss_dssp ESCCCSSSCCSCCCSSCSSCBCCEECCCCCHHHHTTCCTTSSSSCCSCSEEEEESCCCSSCCCCCCC--SCCCEEEEEEE
T ss_pred CCCccccccccccchhhhcCcccccEEECCCCcccccChhHccchhhhheeECCCCCCCccChhhhh--ccccEEECCCC
Confidence 12244455566666666666655555566666666666666666655554444 56666666666
Q ss_pred cccccccccccccccccccccCCccccCCC
Q 005040 320 RLEGEIPVKGSFKDFSAQSYFGNYALCGPP 349 (717)
Q Consensus 320 ~l~~~~p~~~~~~~~~~~~~~~n~~~c~~~ 349 (717)
++++..|. .+..+..+.+.+|++.|+.+
T Consensus 537 ~l~~~~~~--~~~~L~~l~l~~Np~~C~c~ 564 (844)
T 3j0a_A 537 QLLAPNPD--VFVSLSVLDITHNKFICECE 564 (844)
T ss_dssp CCCCCCSC--CCSSCCEEEEEEECCCCSSS
T ss_pred cCCCCChh--HhCCcCEEEecCCCcccccc
Confidence 66665553 35566777788999998654
No 200
>3lij_A Calcium/calmodulin dependent protein kinase with A kinase domain and 4 calmodulin...; transferase, calcium dependent protein kinase; HET: ANP; 1.90A {Cryptosporidium parvum} PDB: 3hzt_A* 3dxn_A 3l19_A*
Probab=100.00 E-value=3.7e-39 Score=355.88 Aligned_cols=249 Identities=24% Similarity=0.323 Sum_probs=198.6
Q ss_pred hccCCccccccccccEEEEEEEec-CCCeEEEEEechhh--HHHHHHHHHHHHHHHhcCCCceeeEeeeeecCCeeEEEE
Q 005040 426 TDEFNECNLLGTGGFGSVYKGTLS-DGTNVAIKIFNLQL--ERAFRSFDSECEILRNVRHRNLLKILGSCSNLDFKALVL 502 (717)
Q Consensus 426 ~~~~~~~~~lg~G~~g~V~~~~~~-~~~~vavK~~~~~~--~~~~~~~~~e~~~l~~l~hpniv~~~~~~~~~~~~~lv~ 502 (717)
.++|++.+.||+|+||+||+|..+ +++.||+|++.... ......+.+|+++++.++||||+++++++.+....++||
T Consensus 36 ~~~y~~~~~lG~G~~g~V~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~E~~~l~~l~hpniv~~~~~~~~~~~~~lv~ 115 (494)
T 3lij_A 36 SEMYQRVKKLGSGAYGEVLLCRDKVTHVERAIKIIRKTSVSTSSNSKLLEEVAVLKLLDHPNIMKLYDFFEDKRNYYLVM 115 (494)
T ss_dssp HHHEEEEEEEECC---EEEEEEETTTCCEEEEEEEEC-----CTTHHHHHHHHHHTTCCCTTBCCEEEEEECSSEEEEEE
T ss_pred hcCeEEeeEEecCCCEEEEEEEECCCCcEEEEEEEeccccCchHHHHHHHHHHHHHhCCCCCCCeEEEEEEeCCEEEEEE
Confidence 468999999999999999999976 78899999987543 223467889999999999999999999999999999999
Q ss_pred EccCCCCHHHHHhhCCCCCCHHHHHHHHHHHHHHHHHHhhcCCCCCeEecCCCCCCeeeCC---CCcEEEeeeccccccC
Q 005040 503 EFMPNGSLEKWLYSHNYFLDILQRLNIMIDVGSALEYLHHCHSSAPIIHCDLKPTNILLDE---NMVAHVSDFGISKLLG 579 (717)
Q Consensus 503 e~~~~g~L~~~l~~~~~~~~~~~~~~i~~~i~~~l~~LH~~~~~~~ivH~dlk~~Nill~~---~~~~kl~Dfgl~~~~~ 579 (717)
||+++|+|.+++.... .+++..+..++.|++.||.||| +.+|+||||||+||+++. ++.+||+|||++....
T Consensus 116 e~~~~g~L~~~~~~~~-~~~~~~~~~i~~qi~~~l~~lH----~~~ivH~Dlkp~Nil~~~~~~~~~~kl~DfG~a~~~~ 190 (494)
T 3lij_A 116 ECYKGGELFDEIIHRM-KFNEVDAAVIIKQVLSGVTYLH----KHNIVHRDLKPENLLLESKEKDALIKIVDFGLSAVFE 190 (494)
T ss_dssp ECCCSCBHHHHHHHHS-SCCHHHHHHHHHHHHHHHHHHH----HTTEECSCCSGGGEEESCSSTTCCEEECCCTTCEECB
T ss_pred ecCCCCcHHHHHHHcC-CCCHHHHHHHHHHHHHHHHHHH----HCCceeccCChhhEEEeCCCCCCcEEEEECCCCeECC
Confidence 9999999999887654 3899999999999999999999 678999999999999976 4559999999998765
Q ss_pred CCCCceeeeccccCccccCCCccCCCCcCcccchhhHHHHHHHHHhCCCCCCccccCcchHHHHHHhh-CCCchhhhccc
Q 005040 580 EGEDSVIQTMTMATIGYMAPEYGSEGIVSTKCDVYSYGVLLMETFTEKKPTDEMFTGEMSLRRWVKES-LPHRLTEVVDA 658 (717)
Q Consensus 580 ~~~~~~~~~~~~~t~~y~aPE~~~~~~~~~~~Dvws~G~il~el~tg~~p~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~ 658 (717)
... ......||+.|+|||++. +.++.++||||+||++|+|++|+.||.+.... .....+... ....
T Consensus 191 ~~~---~~~~~~gt~~y~aPE~l~-~~~~~~~DiwslG~il~~ll~g~~pf~~~~~~--~~~~~i~~~~~~~~------- 257 (494)
T 3lij_A 191 NQK---KMKERLGTAYYIAPEVLR-KKYDEKCDVWSIGVILFILLAGYPPFGGQTDQ--EILRKVEKGKYTFD------- 257 (494)
T ss_dssp TTB---CBCCCCSCTTTCCHHHHT-TCBCTHHHHHHHHHHHHHHHHSSCSSCCSSHH--HHHHHHHHTCCCCC-------
T ss_pred CCc---cccccCCCcCeeCHHHHc-ccCCCchhHHHHHHHHHHHHhCCCCCCCCCHH--HHHHHHHhCCCCCC-------
Confidence 432 223456999999999876 46999999999999999999999999763221 111111111 1000
Q ss_pred cchhhhhhhhhhHHHHHHHHHHHhhccCCCCCCCCCHHHHHH
Q 005040 659 NLVREEQAFSDKMDCLFSIMDLALDCCMDTPHKRIHMTDAAA 700 (717)
Q Consensus 659 ~~~~~~~~~~~~~~~~~~l~~li~~cl~~~P~~Rpt~~ev~~ 700 (717)
.+....++.++.+++.+||+.||++|||+.|+++
T Consensus 258 --------~~~~~~~s~~~~~li~~~L~~dp~~R~s~~e~l~ 291 (494)
T 3lij_A 258 --------SPEWKNVSEGAKDLIKQMLQFDSQRRISAQQALE 291 (494)
T ss_dssp --------SGGGTTSCHHHHHHHHHHTCSSTTTSCCHHHHHT
T ss_pred --------chhcccCCHHHHHHHHHHCCCChhhCccHHHHhc
Confidence 0111234566889999999999999999999985
No 201
>2w5a_A Serine/threonine-protein kinase NEK2; Ser/Thr protein kinase, nucleus, meiosis, mitosis, cytoplasm, metal-binding, phosphoprotein; HET: ADP; 1.55A {Homo sapiens} PDB: 2wqo_A* 2xk3_A* 2xk4_A* 2xk6_A* 2xk7_A* 2xk8_A* 2xkc_A* 2xkd_A* 2xke_A* 2xkf_A* 2xnm_A* 2xnn_A* 2xno_A* 2xnp_A* 4afe_A* 2jav_A* 2w5b_A* 2w5h_A 4a4x_A*
Probab=100.00 E-value=3e-39 Score=329.66 Aligned_cols=253 Identities=22% Similarity=0.312 Sum_probs=202.7
Q ss_pred hccCCccccccccccEEEEEEEec-CCCeEEEEEechhh--HHHHHHHHHHHHHHHhcCCCceeeEeeee--ecCCeeEE
Q 005040 426 TDEFNECNLLGTGGFGSVYKGTLS-DGTNVAIKIFNLQL--ERAFRSFDSECEILRNVRHRNLLKILGSC--SNLDFKAL 500 (717)
Q Consensus 426 ~~~~~~~~~lg~G~~g~V~~~~~~-~~~~vavK~~~~~~--~~~~~~~~~e~~~l~~l~hpniv~~~~~~--~~~~~~~l 500 (717)
.++|++.+.||+|+||.||+|... +++.||+|++.... ....+.+.+|++++++++||||+++++++ ......++
T Consensus 5 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~~~l 84 (279)
T 2w5a_A 5 AEDYEVLYTIGTGSYGRCQKIRRKSDGKILVWKELDYGSMTEAEKQMLVSEVNLLRELKHPNIVRYYDRIIDRTNTTLYI 84 (279)
T ss_dssp GGGEEEEEEEEECSSSEEEEEEETTTCCEEEEEEEECTTCCHHHHHHHHHHHHHHHHCCCTTBCCEEEEEEEGGGTEEEE
T ss_pred hhheeeehhccCCCCcEEEEEEECCCCcEEEEEEEEcccCCHHHHHHHHHHHHHHHhcCCCCCCeEEEEEecCCCceEEE
Confidence 468999999999999999999976 78999999987543 34456789999999999999999999987 44678899
Q ss_pred EEEccCCCCHHHHHhhC---CCCCCHHHHHHHHHHHHHHHHHHhhcCCCCC-----eEecCCCCCCeeeCCCCcEEEeee
Q 005040 501 VLEFMPNGSLEKWLYSH---NYFLDILQRLNIMIDVGSALEYLHHCHSSAP-----IIHCDLKPTNILLDENMVAHVSDF 572 (717)
Q Consensus 501 v~e~~~~g~L~~~l~~~---~~~~~~~~~~~i~~~i~~~l~~LH~~~~~~~-----ivH~dlk~~Nill~~~~~~kl~Df 572 (717)
||||+++++|.+++... ...+++..++.++.|++.||+|||+ .+ |+||||||+||+++.++.+||+||
T Consensus 85 v~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~i~~~i~~~l~~lH~----~~~~~~~ivH~dl~p~NIl~~~~~~~kl~df 160 (279)
T 2w5a_A 85 VMEYCEGGDLASVITKGTKERQYLDEEFVLRVMTQLTLALKECHR----RSDGGHTVLHRDLKPANVFLDGKQNVKLGDF 160 (279)
T ss_dssp EEECCTTEEHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHHHH----HC------CCCCCSGGGEEECSSSCEEECCC
T ss_pred EEeCCCCCCHHHHHHhhcccCCCCCHHHHHHHHHHHHHHHHHHhc----ccCCCCeeEEeccchhhEEEcCCCCEEEecC
Confidence 99999999999999753 3458999999999999999999994 55 999999999999999999999999
Q ss_pred ccccccCCCCCceeeeccccCccccCCCccCCCCcCcccchhhHHHHHHHHHhCCCCCCccccCcchHHHHHHhhCCCch
Q 005040 573 GISKLLGEGEDSVIQTMTMATIGYMAPEYGSEGIVSTKCDVYSYGVLLMETFTEKKPTDEMFTGEMSLRRWVKESLPHRL 652 (717)
Q Consensus 573 gl~~~~~~~~~~~~~~~~~~t~~y~aPE~~~~~~~~~~~Dvws~G~il~el~tg~~p~~~~~~~~~~~~~~~~~~~~~~~ 652 (717)
|++........ ......||+.|+|||.+.+..++.++||||||+++|||++|+.||..... ......+.......
T Consensus 161 g~~~~~~~~~~--~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~g~~p~~~~~~--~~~~~~i~~~~~~~- 235 (279)
T 2w5a_A 161 GLARILNHDTS--FAKTFVGTPYYMSPEQMNRMSYNEKSDIWSLGCLLYELCALMPPFTAFSQ--KELAGKIREGKFRR- 235 (279)
T ss_dssp CHHHHC---CH--HHHHHHSCCTTCCHHHHHCC-CCHHHHHHHHHHHHHHHHHSSCSSCCSSH--HHHHHHHHHTCCCC-
T ss_pred chheeeccccc--cccccCCCccccChHHhccCCCCchhhHHHHHHHHHHHHHCCCCCcccCH--HHHHHHHhhccccc-
Confidence 99987643321 12234689999999999888999999999999999999999999976321 11111111111000
Q ss_pred hhhccccchhhhhhhhhhHHHHHHHHHHHhhccCCCCCCCCCHHHHHHHHH
Q 005040 653 TEVVDANLVREEQAFSDKMDCLFSIMDLALDCCMDTPHKRIHMTDAAAKLR 703 (717)
Q Consensus 653 ~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~cl~~~P~~Rpt~~ev~~~L~ 703 (717)
+ +..++.++.+++.+||+.||++|||+.|+++.+.
T Consensus 236 -------~---------~~~~~~~l~~li~~~l~~~p~~Rps~~~ll~~~~ 270 (279)
T 2w5a_A 236 -------I---------PYRYSDELNEIITRMLNLKDYHRPSVEEILENPL 270 (279)
T ss_dssp -------C---------CTTSCHHHHHHHHHHTCSSGGGSCCHHHHHTSTT
T ss_pred -------C---------CcccCHHHHHHHHHHcCCCcccCCCHHHHHhChh
Confidence 0 1134466889999999999999999999998654
No 202
>3mi9_A Cell division protein kinase 9; P-TEFB, HIV-1, protein binding; HET: TPO; 2.10A {Homo sapiens} PDB: 3mia_A* 4ec9_A* 4ec8_A* 3blh_A* 3blq_A* 3blr_A* 3lq5_A* 3my1_A* 3tn8_A* 3tnh_A* 3tni_A* 4bch_A* 4bci_A* 4bcj_A* 4bcf_A*
Probab=100.00 E-value=4.6e-39 Score=339.76 Aligned_cols=269 Identities=21% Similarity=0.274 Sum_probs=202.8
Q ss_pred hccCCccccccccccEEEEEEEec-CCCeEEEEEechhh--HHHHHHHHHHHHHHHhcCCCceeeEeeeeec--------
Q 005040 426 TDEFNECNLLGTGGFGSVYKGTLS-DGTNVAIKIFNLQL--ERAFRSFDSECEILRNVRHRNLLKILGSCSN-------- 494 (717)
Q Consensus 426 ~~~~~~~~~lg~G~~g~V~~~~~~-~~~~vavK~~~~~~--~~~~~~~~~e~~~l~~l~hpniv~~~~~~~~-------- 494 (717)
.++|++.+.||+|+||.||+|... +|+.||+|++.... ......+.+|+++++.++||||+++++++.+
T Consensus 16 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~~~~ 95 (351)
T 3mi9_A 16 VSKYEKLAKIGQGTFGEVFKARHRKTGQKVALKKVLMENEKEGFPITALREIKILQLLKHENVVNLIEICRTKASPYNRC 95 (351)
T ss_dssp GGGEEEEEECSSCSTTSEEEEEETTTCCEEEEEECCCSSCSSSSCHHHHHHHHHHHHCCCTTBCCEEEEEEEC-------
T ss_pred ccceeEEEEEecCCCcEEEEEEECCCCCEEEEEEEecccccccchHHHHHHHHHHHhccCCCcccHhheeeccccccccC
Confidence 368999999999999999999974 79999999885443 2223567789999999999999999999876
Q ss_pred CCeeEEEEEccCCCCHHHHHhhCCCCCCHHHHHHHHHHHHHHHHHHhhcCCCCCeEecCCCCCCeeeCCCCcEEEeeecc
Q 005040 495 LDFKALVLEFMPNGSLEKWLYSHNYFLDILQRLNIMIDVGSALEYLHHCHSSAPIIHCDLKPTNILLDENMVAHVSDFGI 574 (717)
Q Consensus 495 ~~~~~lv~e~~~~g~L~~~l~~~~~~~~~~~~~~i~~~i~~~l~~LH~~~~~~~ivH~dlk~~Nill~~~~~~kl~Dfgl 574 (717)
.+..++||||+++ +|.+.+......+++..+..++.|++.||+||| +.+|+||||||+||+++.++.+||+|||+
T Consensus 96 ~~~~~lv~e~~~~-~l~~~l~~~~~~~~~~~~~~i~~qi~~~l~~LH----~~~ivH~Dlkp~NIl~~~~~~~kl~Dfg~ 170 (351)
T 3mi9_A 96 KGSIYLVFDFCEH-DLAGLLSNVLVKFTLSEIKRVMQMLLNGLYYIH----RNKILHRDMKAANVLITRDGVLKLADFGL 170 (351)
T ss_dssp -CEEEEEEECCSE-EHHHHHHCTTSCCCHHHHHHHHHHHHHHHHHHH----HTTEECCCCSGGGEEECTTSCEEECCCTT
T ss_pred CceEEEEEeccCC-CHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHH----HCCeeCCCCCHHHEEEcCCCCEEEccchh
Confidence 3468999999974 888888877667999999999999999999999 67899999999999999999999999999
Q ss_pred ccccCCCCC--ceeeeccccCccccCCCccCC-CCcCcccchhhHHHHHHHHHhCCCCCCccccCcchHHHHHHh--hCC
Q 005040 575 SKLLGEGED--SVIQTMTMATIGYMAPEYGSE-GIVSTKCDVYSYGVLLMETFTEKKPTDEMFTGEMSLRRWVKE--SLP 649 (717)
Q Consensus 575 ~~~~~~~~~--~~~~~~~~~t~~y~aPE~~~~-~~~~~~~Dvws~G~il~el~tg~~p~~~~~~~~~~~~~~~~~--~~~ 649 (717)
++.+..... ........||+.|+|||++.+ ..++.++||||+||++|||++|+.||.+..... ........ ..+
T Consensus 171 a~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~DiwslG~il~ell~g~~pf~~~~~~~-~~~~i~~~~~~~~ 249 (351)
T 3mi9_A 171 ARAFSLAKNSQPNRYTNRVVTLWYRPPELLLGERDYGPPIDLWGAGCIMAEMWTRSPIMQGNTEQH-QLALISQLCGSIT 249 (351)
T ss_dssp CEECCCCSSSSCCCCCSSCSCGGGCCHHHHTTCCSCCTHHHHHHHHHHHHHHHHSSCSCCCSSHHH-HHHHHHHHHCCCC
T ss_pred cccccccccccccccCCcccccCccCchhhcCCCCCCcHhHHHHHHHHHHHHHhCCCCCCCCChHH-HHHHHHHHhCCCC
Confidence 987653222 122344568999999998765 568999999999999999999999997632221 11111111 111
Q ss_pred Cc-hhhhccccch----------hhhhhhhhhHHHHHHHHHHHhhccCCCCCCCCCHHHHHH
Q 005040 650 HR-LTEVVDANLV----------REEQAFSDKMDCLFSIMDLALDCCMDTPHKRIHMTDAAA 700 (717)
Q Consensus 650 ~~-~~~~~~~~~~----------~~~~~~~~~~~~~~~l~~li~~cl~~~P~~Rpt~~ev~~ 700 (717)
.. ....-..... ............+..+.+++.+||+.||++|||++|+++
T Consensus 250 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~R~t~~e~l~ 311 (351)
T 3mi9_A 250 PEVWPNVDNYELYEKLELVKGQKRKVKDRLKAYVRDPYALDLIDKLLVLDPAQRIDSDDALN 311 (351)
T ss_dssp TTTSTTGGGCGGGTSSCCCSSCCCCHHHHHHHHHCCHHHHHHHHHHSCSSGGGSCCHHHHHT
T ss_pred hhhccccccchhhcccccccccccCHHHHhhhccCChHHHHHHHHHhcCChhhCCCHHHHhC
Confidence 11 1111000000 000000011112456889999999999999999999986
No 203
>3q5i_A Protein kinase; CDPK, malaria, phosphotransferase, structural genomics, structural genomic consortium, SGC, transferase; HET: ANP; 2.10A {Plasmodium berghei}
Probab=100.00 E-value=1.1e-38 Score=352.97 Aligned_cols=251 Identities=24% Similarity=0.332 Sum_probs=201.3
Q ss_pred HhccCCccccccccccEEEEEEEec-CCCeEEEEEechhhH-------------HHHHHHHHHHHHHHhcCCCceeeEee
Q 005040 425 ATDEFNECNLLGTGGFGSVYKGTLS-DGTNVAIKIFNLQLE-------------RAFRSFDSECEILRNVRHRNLLKILG 490 (717)
Q Consensus 425 ~~~~~~~~~~lg~G~~g~V~~~~~~-~~~~vavK~~~~~~~-------------~~~~~~~~e~~~l~~l~hpniv~~~~ 490 (717)
..++|++.+.||+|+||+||+|... +++.||+|++..... ...+.+.+|++++++++||||+++++
T Consensus 34 i~~~Y~~~~~lG~G~~g~V~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~hpniv~~~~ 113 (504)
T 3q5i_A 34 IGESYFKVRKLGSGAYGEVLLCKEKNGHSEKAIKVIKKSQFDKGRYSDDNKNIEKFHEEIYNEISLLKSLDHPNIIKLFD 113 (504)
T ss_dssp GGGTEEEEEEEEC--CEEEEEEEETTTCCEEEEEEEEC----------------CTHHHHHHHHHHHHTCCCTTBCCEEE
T ss_pred cccceEEEeEecccCCeEEEEEEECCCCcEEEEEEEEhhhcccccccccchhhHHHHHHHHHHHHHHHhCCCCCCCeEEE
Confidence 3578999999999999999999976 688999999865431 23467889999999999999999999
Q ss_pred eeecCCeeEEEEEccCCCCHHHHHhhCCCCCCHHHHHHHHHHHHHHHHHHhhcCCCCCeEecCCCCCCeeeCCCC---cE
Q 005040 491 SCSNLDFKALVLEFMPNGSLEKWLYSHNYFLDILQRLNIMIDVGSALEYLHHCHSSAPIIHCDLKPTNILLDENM---VA 567 (717)
Q Consensus 491 ~~~~~~~~~lv~e~~~~g~L~~~l~~~~~~~~~~~~~~i~~~i~~~l~~LH~~~~~~~ivH~dlk~~Nill~~~~---~~ 567 (717)
++.+....++||||+++|+|.+++.... .+++..+..++.|++.||.||| +.+|+||||||+||+++.++ .+
T Consensus 114 ~~~~~~~~~lv~e~~~gg~L~~~l~~~~-~~~~~~~~~i~~qi~~~l~~lH----~~~ivH~Dlkp~Nil~~~~~~~~~~ 188 (504)
T 3q5i_A 114 VFEDKKYFYLVTEFYEGGELFEQIINRH-KFDECDAANIMKQILSGICYLH----KHNIVHRDIKPENILLENKNSLLNI 188 (504)
T ss_dssp EEECSSEEEEEEECCTTCBHHHHHHHHS-CCCHHHHHHHHHHHHHHHHHHH----HTTEECSCCSGGGEEESSTTCCSSE
T ss_pred EEEcCCEEEEEEecCCCCcHHHHHHHcC-CCCHHHHHHHHHHHHHHHHHHH----HCCeEeCCCcHHHEEEecCCCCccE
Confidence 9999999999999999999999997654 3899999999999999999999 67899999999999999776 69
Q ss_pred EEeeeccccccCCCCCceeeeccccCccccCCCccCCCCcCcccchhhHHHHHHHHHhCCCCCCccccCcchHHHHHHhh
Q 005040 568 HVSDFGISKLLGEGEDSVIQTMTMATIGYMAPEYGSEGIVSTKCDVYSYGVLLMETFTEKKPTDEMFTGEMSLRRWVKES 647 (717)
Q Consensus 568 kl~Dfgl~~~~~~~~~~~~~~~~~~t~~y~aPE~~~~~~~~~~~Dvws~G~il~el~tg~~p~~~~~~~~~~~~~~~~~~ 647 (717)
||+|||++........ .....||+.|+|||++. +.++.++||||+||++|+|++|+.||.+.... .....+...
T Consensus 189 kl~Dfg~a~~~~~~~~---~~~~~gt~~y~aPE~~~-~~~~~~~DiwslG~il~~ll~g~~pf~~~~~~--~~~~~i~~~ 262 (504)
T 3q5i_A 189 KIVDFGLSSFFSKDYK---LRDRLGTAYYIAPEVLK-KKYNEKCDVWSCGVIMYILLCGYPPFGGQNDQ--DIIKKVEKG 262 (504)
T ss_dssp EECCCTTCEECCTTSC---BCCCCSCTTTCCHHHHT-TCBCTHHHHHHHHHHHHHHHHSSCSSCCSSHH--HHHHHHHHC
T ss_pred EEEECCCCEEcCCCCc---cccccCCcCCCCHHHhc-cCCCchHHHHHHHHHHHHHHhCCCCCCCCCHH--HHHHHHHcC
Confidence 9999999987654322 23456999999999877 46899999999999999999999999763221 111111110
Q ss_pred CCCchhhhccccchhhhhhhhhhHHHHHHHHHHHhhccCCCCCCCCCHHHHHH
Q 005040 648 LPHRLTEVVDANLVREEQAFSDKMDCLFSIMDLALDCCMDTPHKRIHMTDAAA 700 (717)
Q Consensus 648 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~cl~~~P~~Rpt~~ev~~ 700 (717)
. ... .......++.++.+++.+||+.||.+|||+.|+++
T Consensus 263 ~-----------~~~---~~~~~~~~s~~~~~li~~~L~~dp~~R~t~~e~l~ 301 (504)
T 3q5i_A 263 K-----------YYF---DFNDWKNISDEAKELIKLMLTYDYNKRCTAEEALN 301 (504)
T ss_dssp C-----------CCC---CHHHHTTSCHHHHHHHHHHTCSSTTTSCCHHHHHT
T ss_pred C-----------CCC---CccccCCCCHHHHHHHHHHcCCChhHCCCHHHHhc
Confidence 0 000 00111234567889999999999999999999986
No 204
>2h6d_A 5'-AMP-activated protein kinase catalytic subunit alpha-2; ATP-binding, cholesterol biosynthesis, fatty acid biosynthesis;kinase, lipid synthesis; 1.85A {Homo sapiens} PDB: 3aqv_A* 2yza_A*
Probab=100.00 E-value=5.9e-39 Score=326.96 Aligned_cols=248 Identities=26% Similarity=0.396 Sum_probs=196.7
Q ss_pred hccCCccccccccccEEEEEEEec-CCCeEEEEEechhhH---HHHHHHHHHHHHHHhcCCCceeeEeeeeecCCeeEEE
Q 005040 426 TDEFNECNLLGTGGFGSVYKGTLS-DGTNVAIKIFNLQLE---RAFRSFDSECEILRNVRHRNLLKILGSCSNLDFKALV 501 (717)
Q Consensus 426 ~~~~~~~~~lg~G~~g~V~~~~~~-~~~~vavK~~~~~~~---~~~~~~~~e~~~l~~l~hpniv~~~~~~~~~~~~~lv 501 (717)
.++|++.+.||+|+||.||+|... +++.||+|++..... ...+.+.+|+++++.++||||+++++++.+.+..++|
T Consensus 10 ~~~y~i~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~lv 89 (276)
T 2h6d_A 10 IGHYVLGDTLGVGTFGKVKIGEHQLTGHKVAVKILNRQKIRSLDVVGKIKREIQNLKLFRHPHIIKLYQVISTPTDFFMV 89 (276)
T ss_dssp ETTEEEEEEEEECSSEEEEEEEETTTCCEEEEEEEEHHHHHHTTCHHHHHHHHHHHHTCCCTTBCCEEEEEECSSEEEEE
T ss_pred eccEEEEeeecCCCCeEEEEEEECCCCceEEEEEeccccccchhHHHHHHHHHHHHhcCCCCCEeEEEEEEecCCeEEEE
Confidence 368999999999999999999976 799999999976532 2346788999999999999999999999999999999
Q ss_pred EEccCCCCHHHHHhhCCCCCCHHHHHHHHHHHHHHHHHHhhcCCCCCeEecCCCCCCeeeCCCCcEEEeeeccccccCCC
Q 005040 502 LEFMPNGSLEKWLYSHNYFLDILQRLNIMIDVGSALEYLHHCHSSAPIIHCDLKPTNILLDENMVAHVSDFGISKLLGEG 581 (717)
Q Consensus 502 ~e~~~~g~L~~~l~~~~~~~~~~~~~~i~~~i~~~l~~LH~~~~~~~ivH~dlk~~Nill~~~~~~kl~Dfgl~~~~~~~ 581 (717)
|||+++++|.+++.... .+++..+..++.|++.||.||| +.+|+||||||+||+++.++.+||+|||++......
T Consensus 90 ~e~~~~~~L~~~l~~~~-~~~~~~~~~~~~qi~~~l~~lH----~~~i~H~dl~p~Nil~~~~~~~~l~dfg~~~~~~~~ 164 (276)
T 2h6d_A 90 MEYVSGGELFDYICKHG-RVEEMEARRLFQQILSAVDYCH----RHMVVHRDLKPENVLLDAHMNAKIADFGLSNMMSDG 164 (276)
T ss_dssp EECCCSCBHHHHHHHHC-SCCHHHHHHHHHHHHHHHHHHH----HHCSSCCCCCGGGEEECTTSCEEECCCCGGGCCCC-
T ss_pred EeccCCCcHHHHHhccC-CCCHHHHHHHHHHHHHHHHHHH----HCCCccCCCChhhEEECCCCCEEEeecccccccCCC
Confidence 99999999999998654 3899999999999999999999 578999999999999999999999999999876443
Q ss_pred CCceeeeccccCccccCCCccCCCCc-CcccchhhHHHHHHHHHhCCCCCCccccCcchHHHHHHhhCCCchhhhccccc
Q 005040 582 EDSVIQTMTMATIGYMAPEYGSEGIV-STKCDVYSYGVLLMETFTEKKPTDEMFTGEMSLRRWVKESLPHRLTEVVDANL 660 (717)
Q Consensus 582 ~~~~~~~~~~~t~~y~aPE~~~~~~~-~~~~Dvws~G~il~el~tg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 660 (717)
.. .....+|+.|+|||.+.+..+ +.++||||+|+++|||++|+.||..... ......+.....
T Consensus 165 ~~---~~~~~~~~~y~aPE~~~~~~~~~~~~Di~slG~~l~~l~~g~~p~~~~~~--~~~~~~~~~~~~----------- 228 (276)
T 2h6d_A 165 EF---LRTSCGSPNYAAPEVISGRLYAGPEVDIWSCGVILYALLCGTLPFDDEHV--PTLFKKIRGGVF----------- 228 (276)
T ss_dssp ---------------CCTGGGTTSCCCHHHHHHHHHHHHHHHHHHSSCSSCCSSH--HHHHHHHHHCCC-----------
T ss_pred cc---eecccCCccccCHHHHcCCCCCCccchHHHHHHHHHHHHhCCCCCCCCcH--HHHHHHhhcCcc-----------
Confidence 21 233468999999999887765 6899999999999999999999975321 111111111100
Q ss_pred hhhhhhhhhhHHHHHHHHHHHhhccCCCCCCCCCHHHHHHH
Q 005040 661 VREEQAFSDKMDCLFSIMDLALDCCMDTPHKRIHMTDAAAK 701 (717)
Q Consensus 661 ~~~~~~~~~~~~~~~~l~~li~~cl~~~P~~Rpt~~ev~~~ 701 (717)
..+..++..+.+++.+||+.||++|||+.|+++.
T Consensus 229 -------~~~~~~~~~l~~li~~~l~~~p~~Rps~~~~l~h 262 (276)
T 2h6d_A 229 -------YIPEYLNRSVATLLMHMLQVDPLKRATIKDIREH 262 (276)
T ss_dssp -------CCCTTSCHHHHHHHHHHTCSSGGGSCCHHHHHHS
T ss_pred -------cCchhcCHHHHHHHHHHccCChhhCCCHHHHHhC
Confidence 0011234568899999999999999999999873
No 205
>3q60_A ROP5B; pseudokinase, transferase; HET: ATP; 1.72A {Toxoplasma gondii} PDB: 3q5z_A*
Probab=100.00 E-value=8.7e-40 Score=347.78 Aligned_cols=254 Identities=11% Similarity=0.103 Sum_probs=183.9
Q ss_pred hccCCccccccccccEEEEEEEec-CCCeEEEEEechhh---HHHHHHHHHHHHHHHhc--CCCceeeEe-------eee
Q 005040 426 TDEFNECNLLGTGGFGSVYKGTLS-DGTNVAIKIFNLQL---ERAFRSFDSECEILRNV--RHRNLLKIL-------GSC 492 (717)
Q Consensus 426 ~~~~~~~~~lg~G~~g~V~~~~~~-~~~~vavK~~~~~~---~~~~~~~~~e~~~l~~l--~hpniv~~~-------~~~ 492 (717)
..+|+..+.||+|+||.||+|.+. +++.||||++.... ....+.+.+|+++++.+ +||||++++ +++
T Consensus 61 ~~~y~~~~~lG~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~E~~~~~~l~~~hp~iv~~~~~~~~p~d~~ 140 (371)
T 3q60_A 61 ERKLKLVEPLRVGDRSVVFLVRDVERLEDFALKVFTMGAENSRSELERLHEATFAAARLLGESPEEARDRRRLLLPSDAV 140 (371)
T ss_dssp EEEEEEEEEEEECSSEEEEEEEETTTTEEEEEEEEECCSTTHHHHHHHHHHHHHHHHHHHC----------CBCCCCEEE
T ss_pred ceeeeeeeeccCCCCEEEEEEEECCCCceeEEEEEEecccccccHHHHHHHHHHHHHHhcccChhhhhhceeEEeeehhe
Confidence 356899999999999999999975 78999999997643 33456677786555555 699988855 333
Q ss_pred ecC-----------------CeeEEEEEccCCCCHHHHHhhCCCCCCHHHH------HHHHHHHHHHHHHHhhcCCCCCe
Q 005040 493 SNL-----------------DFKALVLEFMPNGSLEKWLYSHNYFLDILQR------LNIMIDVGSALEYLHHCHSSAPI 549 (717)
Q Consensus 493 ~~~-----------------~~~~lv~e~~~~g~L~~~l~~~~~~~~~~~~------~~i~~~i~~~l~~LH~~~~~~~i 549 (717)
... ...|+||||++ |+|.+++...+..+++..+ ..++.|++.||+||| +.+|
T Consensus 141 ~~~~~~~~~~~~~~~~~~~~~~~~lv~e~~~-~~L~~~l~~~~~~~~~~~~~~~~vk~~i~~qi~~aL~~LH----~~~i 215 (371)
T 3q60_A 141 AVQSQPPFAQLSPGQDDYAVANYLLLMPAAS-VDLELLFSTLDFVYVFRGDEGILALHILTAQLIRLAANLQ----SKGL 215 (371)
T ss_dssp EETTSCSSSBCSCC---CCEEEEEEEECCCS-EEHHHHHHHHHHSCCCCHHHHHHHHHHHHHHHHHHHHHHH----HTTE
T ss_pred ecCCCCCeeeccCCcccceeeeEEEEecCCC-CCHHHHHHHhccccchhhhhhhhhHHHHHHHHHHHHHHHH----HCCC
Confidence 222 34799999998 8999999865444566666 788899999999999 6789
Q ss_pred EecCCCCCCeeeCCCCcEEEeeeccccccCCCCCceeeeccccCccccCCCccCC--CCcCcccchhhHHHHHHHHHhCC
Q 005040 550 IHCDLKPTNILLDENMVAHVSDFGISKLLGEGEDSVIQTMTMATIGYMAPEYGSE--GIVSTKCDVYSYGVLLMETFTEK 627 (717)
Q Consensus 550 vH~dlk~~Nill~~~~~~kl~Dfgl~~~~~~~~~~~~~~~~~~t~~y~aPE~~~~--~~~~~~~Dvws~G~il~el~tg~ 627 (717)
+||||||+|||++.++.+||+|||+++..+.. .....+|+.|+|||++.+ ..++.++|||||||++|||++|+
T Consensus 216 vHrDikp~NIll~~~~~~kL~DFG~a~~~~~~-----~~~~~~t~~y~aPE~~~~~~~~~~~~~DiwSlG~il~elltg~ 290 (371)
T 3q60_A 216 VHGHFTPDNLFIMPDGRLMLGDVSALWKVGTR-----GPASSVPVTYAPREFLNASTATFTHALNAWQLGLSIYRVWCLF 290 (371)
T ss_dssp EETTCSGGGEEECTTSCEEECCGGGEEETTCE-----EEGGGSCGGGCCHHHHTCSEEECCHHHHHHHHHHHHHHHHHSS
T ss_pred ccCcCCHHHEEECCCCCEEEEecceeeecCCC-----ccCccCCcCCcChhhccCCCCCcCccccHHHHHHHHHHHHhCC
Confidence 99999999999999999999999999876421 124457799999999887 77999999999999999999999
Q ss_pred CCCCccccCcchHHHHHHhhCCCchhhhccccchhhhhhhhhhHHHHHHHHHHHhhccCCCCCCCCCHHHHHH
Q 005040 628 KPTDEMFTGEMSLRRWVKESLPHRLTEVVDANLVREEQAFSDKMDCLFSIMDLALDCCMDTPHKRIHMTDAAA 700 (717)
Q Consensus 628 ~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~cl~~~P~~Rpt~~ev~~ 700 (717)
.||......... .|... .......... ..+....++..+.+++.+||+.||++|||+.|+++
T Consensus 291 ~Pf~~~~~~~~~--~~~~~----~~~~~~~~~~-----~~~~~~~~~~~~~~li~~~L~~dP~~Rpt~~e~l~ 352 (371)
T 3q60_A 291 LPFGLVTPGIKG--SWKRP----SLRVPGTDSL-----AFGSCTPLPDFVKTLIGRFLNFDRRRRLLPLEAME 352 (371)
T ss_dssp CSTTBCCTTCTT--CCCBC----CTTSCCCCSC-----CCTTSSCCCHHHHHHHHHHTCSSTTTCCCHHHHTT
T ss_pred CCCCCcCccccc--chhhh----hhhhcccccc-----chhhccCCCHHHHHHHHHHcCCChhhCCCHHHHhc
Confidence 999875332110 00000 0000000000 11111244567889999999999999999999975
No 206
>2vwi_A Serine/threonine-protein kinase OSR1; STE kinase, hypertension, transferase; HET: ANP; 2.15A {Homo sapiens} PDB: 3dak_A*
Probab=100.00 E-value=9.1e-40 Score=337.83 Aligned_cols=262 Identities=25% Similarity=0.323 Sum_probs=187.7
Q ss_pred HHhccCCccccccccccEEEEEEEec-CCCeEEEEEechhh-HHHHHHHHHHHHHHHhcCCCceeeEeeeeecCCeeEEE
Q 005040 424 RATDEFNECNLLGTGGFGSVYKGTLS-DGTNVAIKIFNLQL-ERAFRSFDSECEILRNVRHRNLLKILGSCSNLDFKALV 501 (717)
Q Consensus 424 ~~~~~~~~~~~lg~G~~g~V~~~~~~-~~~~vavK~~~~~~-~~~~~~~~~e~~~l~~l~hpniv~~~~~~~~~~~~~lv 501 (717)
...++|++.+.||+|+||.||+|... +++.||||++.... ....+.+.+|++++++++||||+++++++...+..++|
T Consensus 12 i~~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~lv 91 (303)
T 2vwi_A 12 INRDDYELQEVIGSGATAVVQAAYCAPKKEKVAIKRINLEKCQTSMDELLKEIQAMSQCHHPNIVSYYTSFVVKDELWLV 91 (303)
T ss_dssp -CCCCCEEEEECC---CCCEEEEEC----CEEEEECCC----------------CCCCCCCTTBCCEEEEEESSSCEEEE
T ss_pred cchhhhhhhheeccccceEEEEEEECCCCcEEEEEEEEhhhcchhHHHHHHHHHHHhhcCCCCEeeEEEEEeecCCcEEE
Confidence 34578999999999999999999864 78999999987543 33456788899999999999999999999999999999
Q ss_pred EEccCCCCHHHHHhh-------CCCCCCHHHHHHHHHHHHHHHHHHhhcCCCCCeEecCCCCCCeeeCCCCcEEEeeecc
Q 005040 502 LEFMPNGSLEKWLYS-------HNYFLDILQRLNIMIDVGSALEYLHHCHSSAPIIHCDLKPTNILLDENMVAHVSDFGI 574 (717)
Q Consensus 502 ~e~~~~g~L~~~l~~-------~~~~~~~~~~~~i~~~i~~~l~~LH~~~~~~~ivH~dlk~~Nill~~~~~~kl~Dfgl 574 (717)
|||+++++|.+++.. ....+++..+..++.|++.||.||| +.+|+||||||+||+++.++.+||+|||+
T Consensus 92 ~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~i~~qi~~~l~~lH----~~~i~H~dl~p~Nil~~~~~~~kl~dfg~ 167 (303)
T 2vwi_A 92 MKLLSGGSVLDIIKHIVAKGEHKSGVLDESTIATILREVLEGLEYLH----KNGQIHRDVKAGNILLGEDGSVQIADFGV 167 (303)
T ss_dssp EECCTTCBHHHHHHHHHHTTTTTTCSSCHHHHHHHHHHHHHHHHHHH----HTTCCCCCCSGGGEEECTTCCEEECCCHH
T ss_pred ehhccCCchHHHHHHHhhccccccCCCCHHHHHHHHHHHHHHHHHHH----hCCCCCCCCChhhEEEcCCCCEEEEeccc
Confidence 999999999999974 2445899999999999999999999 67899999999999999999999999999
Q ss_pred ccccCCCCC---ceeeeccccCccccCCCccCC-CCcCcccchhhHHHHHHHHHhCCCCCCccccCcchHHHHHHhhCCC
Q 005040 575 SKLLGEGED---SVIQTMTMATIGYMAPEYGSE-GIVSTKCDVYSYGVLLMETFTEKKPTDEMFTGEMSLRRWVKESLPH 650 (717)
Q Consensus 575 ~~~~~~~~~---~~~~~~~~~t~~y~aPE~~~~-~~~~~~~Dvws~G~il~el~tg~~p~~~~~~~~~~~~~~~~~~~~~ 650 (717)
+........ ........||+.|+|||++.+ ..++.++||||||+++|||++|+.||........ ........+.
T Consensus 168 ~~~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~~Di~slG~il~~l~~g~~pf~~~~~~~~--~~~~~~~~~~ 245 (303)
T 2vwi_A 168 SAFLATGGDITRNKVRKTFVGTPCWMAPEVMEQVRGYDFKADIWSFGITAIELATGAAPYHKYPPMKV--LMLTLQNDPP 245 (303)
T ss_dssp HHHCC---------------CCCTTCCHHHHHHHHCCCTHHHHHHHHHHHHHHHHSSCTTTTSCGGGH--HHHHHTSSCC
T ss_pred hheeccCCCccchhhhcccCCCccccCHHHhccccCCCchhhHHHHHHHHHHHHhCCCCCccCchhhH--HHHHhccCCC
Confidence 987643321 111234468999999998765 5689999999999999999999999976433221 1111111111
Q ss_pred chh-hhccccchhhhhhhhhhHHHHHHHHHHHhhccCCCCCCCCCHHHHHH
Q 005040 651 RLT-EVVDANLVREEQAFSDKMDCLFSIMDLALDCCMDTPHKRIHMTDAAA 700 (717)
Q Consensus 651 ~~~-~~~~~~~~~~~~~~~~~~~~~~~l~~li~~cl~~~P~~Rpt~~ev~~ 700 (717)
... ...+... ...++.++.+++.+||+.||++|||+.|+++
T Consensus 246 ~~~~~~~~~~~---------~~~~~~~~~~li~~~l~~dp~~Rps~~~ll~ 287 (303)
T 2vwi_A 246 SLETGVQDKEM---------LKKYGKSFRKMISLCLQKDPEKRPTAAELLR 287 (303)
T ss_dssp CTTC-----CC---------CCCCCHHHHHHHHHHCCSSGGGSCCHHHHHT
T ss_pred ccccccccchh---------hhhhhHHHHHHHHHHccCChhhCcCHHHHhh
Confidence 111 0011111 1123456889999999999999999999986
No 207
>2r3i_A Cell division protein kinase 2; serine/threonine-protein kinase, cell cycle, inhibition, cyclin-dependent kinase, cancer, ATP-binding; HET: SCF; 1.28A {Homo sapiens} PDB: 2r3j_A* 2r3k_A* 2r3l_A* 2r3m_A* 2r3n_A* 2r3o_A* 2r3p_A* 2r3q_A* 1jvp_P* 1buh_A 1ckp_A* 1di8_A* 1dm2_A* 1f5q_A 1fin_A* 1fq1_B* 1fvt_A* 1fvv_A* 1g5s_A* 1gih_A* ...
Probab=100.00 E-value=4.1e-39 Score=332.24 Aligned_cols=266 Identities=24% Similarity=0.306 Sum_probs=201.5
Q ss_pred ccCCccccccccccEEEEEEEec-CCCeEEEEEechhhH--HHHHHHHHHHHHHHhcCCCceeeEeeeeecCCeeEEEEE
Q 005040 427 DEFNECNLLGTGGFGSVYKGTLS-DGTNVAIKIFNLQLE--RAFRSFDSECEILRNVRHRNLLKILGSCSNLDFKALVLE 503 (717)
Q Consensus 427 ~~~~~~~~lg~G~~g~V~~~~~~-~~~~vavK~~~~~~~--~~~~~~~~e~~~l~~l~hpniv~~~~~~~~~~~~~lv~e 503 (717)
++|+..+.||+|+||.||+|... +++.||||++..... ...+.+.+|++++++++||||+++++++.+.+..++|||
T Consensus 3 ~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~lv~e 82 (299)
T 2r3i_A 3 ENFQKVEKIGEGTYGVVYKARNKLTGEVVALKKIRLDTETEGVPSTAIREISLLKELNHPNIVKLLDVIHTENKLYLVFE 82 (299)
T ss_dssp TTEEEEEEEEECSSSEEEEEEETTTCCEEEEEEC--------CCHHHHHHHHHHTTCCCTTBCCEEEEEEETTEEEEEEE
T ss_pred chhhhhhhhccCCCeeEEEEEEcCCCceEEEEEeecCccchhhHHHHHHHHHHHHHcCCCCeeeEEEEEecCCceEEEEE
Confidence 57899999999999999999976 789999999875432 223567889999999999999999999999999999999
Q ss_pred ccCCCCHHHHHhhCC-CCCCHHHHHHHHHHHHHHHHHHhhcCCCCCeEecCCCCCCeeeCCCCcEEEeeeccccccCCCC
Q 005040 504 FMPNGSLEKWLYSHN-YFLDILQRLNIMIDVGSALEYLHHCHSSAPIIHCDLKPTNILLDENMVAHVSDFGISKLLGEGE 582 (717)
Q Consensus 504 ~~~~g~L~~~l~~~~-~~~~~~~~~~i~~~i~~~l~~LH~~~~~~~ivH~dlk~~Nill~~~~~~kl~Dfgl~~~~~~~~ 582 (717)
|++ ++|.+++.... ..+++..+..++.|++.||.||| +.+|+||||||+||+++.++.+||+|||++.......
T Consensus 83 ~~~-~~L~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~lH----~~~i~H~dlkp~Nili~~~~~~kl~dfg~~~~~~~~~ 157 (299)
T 2r3i_A 83 FLH-QDLKKFMDASALTGIPLPLIKSYLFQLLQGLAFCH----SHRVLHRDLKPQNLLINTEGAIKLADFGLARAFGVPV 157 (299)
T ss_dssp CCS-EEHHHHHHHTTTTCCCHHHHHHHHHHHHHHHHHHH----HTTCCCCCCCGGGEEECTTSCEEECSTTHHHHHCCCS
T ss_pred ccc-CCHHHHHHhhhccCCCHHHHHHHHHHHHHHHHHHH----HCCccCCCCCHHHeEEcCCCCEEECcchhhhhccCCc
Confidence 997 69999998653 45899999999999999999999 6789999999999999999999999999998764332
Q ss_pred CceeeeccccCccccCCCccCCCC-cCcccchhhHHHHHHHHHhCCCCCCccccCcchHHHHHHhhC-CCc--hhhhc--
Q 005040 583 DSVIQTMTMATIGYMAPEYGSEGI-VSTKCDVYSYGVLLMETFTEKKPTDEMFTGEMSLRRWVKESL-PHR--LTEVV-- 656 (717)
Q Consensus 583 ~~~~~~~~~~t~~y~aPE~~~~~~-~~~~~Dvws~G~il~el~tg~~p~~~~~~~~~~~~~~~~~~~-~~~--~~~~~-- 656 (717)
. ......+|+.|+|||.+.+.. ++.++||||||+++|||++|+.||......+ .......... +.. +....
T Consensus 158 ~--~~~~~~~~~~y~aPE~~~~~~~~~~~~Di~slG~~l~~l~~g~~pf~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~ 234 (299)
T 2r3i_A 158 R--TYTHEVVTLWYRAPEILLGAKYYSTAVDIWSLGCIFAEMVTRRALFPGDSEID-QLFRIFRTLGTPDEVVWPGVTSM 234 (299)
T ss_dssp B--CTTSCBCCCTTCCHHHHTTCSSCCTHHHHHHHHHHHHHHHHSSCSCCCSSHHH-HHHHHHHHHCCCCTTTSTTGGGS
T ss_pred c--ccCcccccccccCcHHhhccccCChHHHHHHHHHHHHHHHhCCCCCCCccHHH-HHHHHHHHhCCCchhhhhHhhcC
Confidence 1 123346799999999887755 7999999999999999999999997643211 1122222111 100 00000
Q ss_pred ---cccchhhh-hh-hhhhHHHHHHHHHHHhhccCCCCCCCCCHHHHHH
Q 005040 657 ---DANLVREE-QA-FSDKMDCLFSIMDLALDCCMDTPHKRIHMTDAAA 700 (717)
Q Consensus 657 ---~~~~~~~~-~~-~~~~~~~~~~l~~li~~cl~~~P~~Rpt~~ev~~ 700 (717)
.+.+.... .. ......++.++.+++.+||+.||++|||+.|+++
T Consensus 235 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~Rpt~~~~l~ 283 (299)
T 2r3i_A 235 PDYKPSFPKWARQDFSKVVPPLDEDGRSLLSQMLHYDPNKRISAKAALA 283 (299)
T ss_dssp TTCCTTSCCCCCCCHHHHSTTCCHHHHHHHHHHTCSSTTTSCCHHHHHT
T ss_pred cccchhhhcccchhhHhhCCCCCHHHHHHHHHhcCcCcccCCCHHHHhc
Confidence 00000000 00 0001124567889999999999999999999986
No 208
>3pg1_A Mitogen-activated protein kinase, putative (MAP K protein); EPK Ser/Thr protein kinase fold, Ser/Thr protein kinase, TRA; 1.95A {Leishmania major} PDB: 3uib_A*
Probab=100.00 E-value=8.7e-39 Score=339.20 Aligned_cols=273 Identities=21% Similarity=0.234 Sum_probs=202.0
Q ss_pred HHHHHHHhccCCccccccccccEEEEEEEecCCCeEEEEEechhh-----------HHHHHHHHHHHHHHHhcCCCceee
Q 005040 419 YLDIRRATDEFNECNLLGTGGFGSVYKGTLSDGTNVAIKIFNLQL-----------ERAFRSFDSECEILRNVRHRNLLK 487 (717)
Q Consensus 419 ~~~~~~~~~~~~~~~~lg~G~~g~V~~~~~~~~~~vavK~~~~~~-----------~~~~~~~~~e~~~l~~l~hpniv~ 487 (717)
..++....++|++.+.||+|+||.||+|...+|+.||||++.... ....+.+.+|++++++++||||++
T Consensus 14 ~~~~~~~~~~y~~~~~lg~G~~g~V~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~ 93 (362)
T 3pg1_A 14 IAELHAMQSPYTVQRFISSGSYGAVCAGVDSEGIPVAIKRVFNTVSDGRTVNILSDSFLCKRVLREIRLLNHFHHPNILG 93 (362)
T ss_dssp HHHHHHTTCSCEEEEEEEEETTEEEEEEECTTSCEEEEEEECEECCTTSCEEGGGSHHHHHHHHHHHHHHHHCCCTTBCC
T ss_pred HHHHHHhccceEEeEEeccCCCEEEEEEECCCCCeEEEEeccccCCccchhhhhhhhhHHHHHHHHHHHHHhCCCcCccc
Confidence 456778889999999999999999999998889999999885421 223467899999999999999999
Q ss_pred Eeeeee-----cCCeeEEEEEccCCCCHHHHHhhCCCCCCHHHHHHHHHHHHHHHHHHhhcCCCCCeEecCCCCCCeeeC
Q 005040 488 ILGSCS-----NLDFKALVLEFMPNGSLEKWLYSHNYFLDILQRLNIMIDVGSALEYLHHCHSSAPIIHCDLKPTNILLD 562 (717)
Q Consensus 488 ~~~~~~-----~~~~~~lv~e~~~~g~L~~~l~~~~~~~~~~~~~~i~~~i~~~l~~LH~~~~~~~ivH~dlk~~Nill~ 562 (717)
+++++. .....++||||++ |+|.+++......+++..+..++.|++.||.||| +.+|+||||||+||+++
T Consensus 94 ~~~~~~~~~~~~~~~~~lv~e~~~-~~l~~~~~~~~~~~~~~~~~~~~~qi~~~l~~lH----~~~ivH~Dlkp~NIl~~ 168 (362)
T 3pg1_A 94 LRDIFVHFEEPAMHKLYLVTELMR-TDLAQVIHDQRIVISPQHIQYFMYHILLGLHVLH----EAGVVHRDLHPGNILLA 168 (362)
T ss_dssp CSEEEEECCTTTCCEEEEEEECCS-EEHHHHHHCTTSCCCHHHHHHHHHHHHHHHHHHH----HTTCCCCCCCGGGEEEC
T ss_pred eeeeEEeccCCCcceEEEEEccCC-CCHHHHHHhcccCCCHHHHHHHHHHHHHHHHHHH----HCcCEecCCChHHEEEc
Confidence 999983 3446899999997 6999999877777999999999999999999999 67899999999999999
Q ss_pred CCCcEEEeeeccccccCCCCCceeeeccccCccccCCCccCC-CCcCcccchhhHHHHHHHHHhCCCCCCccccCcchHH
Q 005040 563 ENMVAHVSDFGISKLLGEGEDSVIQTMTMATIGYMAPEYGSE-GIVSTKCDVYSYGVLLMETFTEKKPTDEMFTGEMSLR 641 (717)
Q Consensus 563 ~~~~~kl~Dfgl~~~~~~~~~~~~~~~~~~t~~y~aPE~~~~-~~~~~~~Dvws~G~il~el~tg~~p~~~~~~~~~~~~ 641 (717)
.++.+||+|||++....... ......+|+.|+|||++.+ ..++.++||||+||++|||++|+.||...... ....
T Consensus 169 ~~~~~kl~Dfg~~~~~~~~~---~~~~~~~t~~y~aPE~~~~~~~~~~~~DiwslG~il~~l~~g~~pf~~~~~~-~~~~ 244 (362)
T 3pg1_A 169 DNNDITICDFNLAREDTADA---NKTHYVTHRWYRAPELVMQFKGFTKLVDMWSAGCVMAEMFNRKALFRGSTFY-NQLN 244 (362)
T ss_dssp TTCCEEECCTTC------------------CGGGCCHHHHTTCTTCCTHHHHHHHHHHHHHHHHSSCSCCCSSHH-HHHH
T ss_pred CCCCEEEEecCccccccccc---ccceecccceecCcHHhcCCCCCCcHhHHHhHHHHHHHHHhCCCCCCCCCHH-HHHH
Confidence 99999999999997543322 2234568999999998776 77999999999999999999999999763211 1111
Q ss_pred HHHHhhCCCchhhh-----------ccccchhhh--hhhhhhHHHHHHHHHHHhhccCCCCCCCCCHHHHHH
Q 005040 642 RWVKESLPHRLTEV-----------VDANLVREE--QAFSDKMDCLFSIMDLALDCCMDTPHKRIHMTDAAA 700 (717)
Q Consensus 642 ~~~~~~~~~~~~~~-----------~~~~~~~~~--~~~~~~~~~~~~l~~li~~cl~~~P~~Rpt~~ev~~ 700 (717)
.............. ......... ........++..+.+++.+||+.||++|||+.|+++
T Consensus 245 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~Rpt~~ell~ 316 (362)
T 3pg1_A 245 KIVEVVGTPKIEDVVMFSSPSARDYLRNSLSNVPARAWTAVVPTADPVALDLIAKMLEFNPQRRISTEQALR 316 (362)
T ss_dssp HHHHHHCCCCHHHHHHTSCHHHHHHTTTCCCCCCCCCHHHHSTTSCHHHHHHHHHHTCSSGGGSCCHHHHHT
T ss_pred HHHHHcCCCChHHhhhccchhhhHHHHhhcccCChhhHHhhCCCCCHHHHHHHHHHhcCChhhCCCHHHHHc
Confidence 11111111111100 000000000 000111233566889999999999999999999986
No 209
>3nyv_A Calmodulin-domain protein kinase 1; serine/threonine protein kinase, transferase, calcium-bindin binding, EF hand, bumped kinase inhibitor; HET: MSE DTQ; 1.88A {Toxoplasma gondii} PDB: 3i79_A* 3i7b_A* 3n51_A* 3i7c_A* 3sx9_A* 3sxf_A* 3t3u_A* 3t3v_A* 3upx_A* 3upz_A* 3v51_A* 3v5p_A* 3v5t_A* 3ku2_A* 3hx4_A*
Probab=100.00 E-value=3.1e-39 Score=356.07 Aligned_cols=249 Identities=25% Similarity=0.366 Sum_probs=205.1
Q ss_pred hccCCccccccccccEEEEEEEec-CCCeEEEEEechhh---HHHHHHHHHHHHHHHhcCCCceeeEeeeeecCCeeEEE
Q 005040 426 TDEFNECNLLGTGGFGSVYKGTLS-DGTNVAIKIFNLQL---ERAFRSFDSECEILRNVRHRNLLKILGSCSNLDFKALV 501 (717)
Q Consensus 426 ~~~~~~~~~lg~G~~g~V~~~~~~-~~~~vavK~~~~~~---~~~~~~~~~e~~~l~~l~hpniv~~~~~~~~~~~~~lv 501 (717)
.++|++.+.||+|+||.||+|... +++.||||++.... ....+.+.+|++++++++||||+++++++.+.+..++|
T Consensus 25 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~~avK~~~~~~~~~~~~~~~~~~E~~~l~~l~hpniv~~~~~~~~~~~~~lv 104 (484)
T 3nyv_A 25 SDRYKGQRVLGKGSFGEVILCKDKITGQECAVKVISKRQVKQKTDKESLLREVQLLKQLDHPNIMKLYEFFEDKGYFYLV 104 (484)
T ss_dssp HHHEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEETTTCCBSSCHHHHHHHHHHHTTCCCTTBCCEEEEEECSSEEEEE
T ss_pred cCceEEeeEEecCCCEEEEEEEECCCCCEEEEEEEEhhhcccchHHHHHHHHHHHHHhCCCCCCCcEEEEEEeCCEEEEE
Confidence 468999999999999999999976 89999999986543 23456788999999999999999999999999999999
Q ss_pred EEccCCCCHHHHHhhCCCCCCHHHHHHHHHHHHHHHHHHhhcCCCCCeEecCCCCCCeee---CCCCcEEEeeecccccc
Q 005040 502 LEFMPNGSLEKWLYSHNYFLDILQRLNIMIDVGSALEYLHHCHSSAPIIHCDLKPTNILL---DENMVAHVSDFGISKLL 578 (717)
Q Consensus 502 ~e~~~~g~L~~~l~~~~~~~~~~~~~~i~~~i~~~l~~LH~~~~~~~ivH~dlk~~Nill---~~~~~~kl~Dfgl~~~~ 578 (717)
|||+.+|+|.+++.... .+++..+..++.|++.||.||| +.+|+||||||+||++ +.++.+||+|||++..+
T Consensus 105 ~e~~~~~~L~~~~~~~~-~~~~~~~~~i~~qi~~~l~~lH----~~~ivH~Dlkp~Nil~~~~~~~~~~kl~Dfg~a~~~ 179 (484)
T 3nyv_A 105 GEVYTGGELFDEIISRK-RFSEVDAARIIRQVLSGITYMH----KNKIVHRDLKPENLLLESKSKDANIRIIDFGLSTHF 179 (484)
T ss_dssp ECCCCSCBHHHHHHTCS-CCBHHHHHHHHHHHHHHHHHHH----HTTCCCSCCCGGGEEESSSSTTCCEEECCTTHHHHB
T ss_pred EecCCCCCHHHHHHhcC-CCCHHHHHHHHHHHHHHHHHHH----HCCeeeCCCCHHHEEEecCCCCCcEEEEeeeeeEEc
Confidence 99999999999998654 4899999999999999999999 6789999999999999 56789999999999877
Q ss_pred CCCCCceeeeccccCccccCCCccCCCCcCcccchhhHHHHHHHHHhCCCCCCccccCcchHHHHHHhh-CCCchhhhcc
Q 005040 579 GEGEDSVIQTMTMATIGYMAPEYGSEGIVSTKCDVYSYGVLLMETFTEKKPTDEMFTGEMSLRRWVKES-LPHRLTEVVD 657 (717)
Q Consensus 579 ~~~~~~~~~~~~~~t~~y~aPE~~~~~~~~~~~Dvws~G~il~el~tg~~p~~~~~~~~~~~~~~~~~~-~~~~~~~~~~ 657 (717)
..... .....||+.|+|||++.+ .++.++||||+||++|+|++|+.||..... ......+... ....
T Consensus 180 ~~~~~---~~~~~gt~~y~aPE~~~~-~~~~~~DiwslG~il~~ll~g~~pf~~~~~--~~~~~~i~~~~~~~~------ 247 (484)
T 3nyv_A 180 EASKK---MKDKIGTAYYIAPEVLHG-TYDEKCDVWSTGVILYILLSGCPPFNGANE--YDILKKVEKGKYTFE------ 247 (484)
T ss_dssp CCCCS---HHHHTTGGGTCCHHHHHT-CCCTHHHHHHHHHHHHHHHHSSCSSCCSSH--HHHHHHHHHCCCCCC------
T ss_pred ccccc---cccCCCCccccCceeecC-CCCCcceeHHHHHHHHHHHHCCCCCCCCCH--HHHHHHHHcCCCCCC------
Confidence 54332 234568999999998865 689999999999999999999999976321 1112211111 0000
Q ss_pred ccchhhhhhhhhhHHHHHHHHHHHhhccCCCCCCCCCHHHHHH
Q 005040 658 ANLVREEQAFSDKMDCLFSIMDLALDCCMDTPHKRIHMTDAAA 700 (717)
Q Consensus 658 ~~~~~~~~~~~~~~~~~~~l~~li~~cl~~~P~~Rpt~~ev~~ 700 (717)
.+....++.++.+++.+||+.||++|||+.|+++
T Consensus 248 ---------~~~~~~~s~~~~~li~~~L~~dp~~R~s~~e~l~ 281 (484)
T 3nyv_A 248 ---------LPQWKKVSESAKDLIRKMLTYVPSMRISARDALD 281 (484)
T ss_dssp ---------SGGGGGSCHHHHHHHHHHTCSSGGGSCCHHHHHT
T ss_pred ---------CcccccCCHHHHHHHHHHCCCChhHCcCHHHHhh
Confidence 1112234567889999999999999999999986
No 210
>3qyz_A Mitogen-activated protein kinase 1; transferase, serine/threonine-protein kinase, ATP-binding CE phosphorylation; HET: CME Z8B SO4; 1.46A {Rattus norvegicus} PDB: 2fys_B 1erk_A* 3qyi_A* 3erk_A* 3qyw_A* 4erk_A* 4gsb_A* 4gt3_A* 4gva_A* 2z7l_A* 2erk_A* 1gol_A* 2gph_A 3zu7_A 3zuv_A* 3o71_A 3r63_A 3c9w_A* 2y9q_A* 4fmq_A* ...
Probab=100.00 E-value=8.9e-39 Score=339.04 Aligned_cols=267 Identities=23% Similarity=0.255 Sum_probs=202.1
Q ss_pred hccCCccccccccccEEEEEEEec-CCCeEEEEEechhh-HHHHHHHHHHHHHHHhcCCCceeeEeeeeecC-----Cee
Q 005040 426 TDEFNECNLLGTGGFGSVYKGTLS-DGTNVAIKIFNLQL-ERAFRSFDSECEILRNVRHRNLLKILGSCSNL-----DFK 498 (717)
Q Consensus 426 ~~~~~~~~~lg~G~~g~V~~~~~~-~~~~vavK~~~~~~-~~~~~~~~~e~~~l~~l~hpniv~~~~~~~~~-----~~~ 498 (717)
..+|++.+.||+|+||.||+|... +++.||||++.... ....+.+.+|++++++++||||+++++++... ...
T Consensus 26 ~~~y~~~~~lG~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~~~~~~~~~~~~~~~~~ 105 (364)
T 3qyz_A 26 GPRYTNLSYIGEGAYGMVCSAYDNLNKVRVAIKKISPFEHQTYCQRTLREIKILLRFRHENIIGINDIIRAPTIEQMKDV 105 (364)
T ss_dssp TTTEEEEEEEEECSSEEEEEEEETTTTEEEEEEEECCTTCHHHHHHHHHHHHHHHHCCCTTBCCCCEEECCSSTTTCCCE
T ss_pred cccEEEEEEeecCCCeEEEEEEECCCCeEEEEEEeccccCcHHHHHHHHHHHHHHhcCCCCCccceeEEecCCccccceE
Confidence 358999999999999999999875 78899999987443 33446788999999999999999999998654 468
Q ss_pred EEEEEccCCCCHHHHHhhCCCCCCHHHHHHHHHHHHHHHHHHhhcCCCCCeEecCCCCCCeeeCCCCcEEEeeecccccc
Q 005040 499 ALVLEFMPNGSLEKWLYSHNYFLDILQRLNIMIDVGSALEYLHHCHSSAPIIHCDLKPTNILLDENMVAHVSDFGISKLL 578 (717)
Q Consensus 499 ~lv~e~~~~g~L~~~l~~~~~~~~~~~~~~i~~~i~~~l~~LH~~~~~~~ivH~dlk~~Nill~~~~~~kl~Dfgl~~~~ 578 (717)
++||||++ |+|.+++.... +++..+..++.|++.||+||| +.+|+||||||+||+++.++.+||+|||++...
T Consensus 106 ~iv~e~~~-~~L~~~l~~~~--~~~~~~~~i~~qi~~aL~~LH----~~~ivH~Dikp~NIl~~~~~~~kl~Dfg~a~~~ 178 (364)
T 3qyz_A 106 YIVQDLME-TDLYKLLKTQH--LSNDHICYFLYQILRGLKYIH----SANVLHRDLKPSNLLLNTTCDLKICDFGLARVA 178 (364)
T ss_dssp EEEEECCS-EEHHHHHHHCC--CCHHHHHHHHHHHHHHHHHHH----HTTEECCCCCGGGEEECTTCCEEECCCTTCEEC
T ss_pred EEEEcccC-cCHHHHHHhCC--CCHHHHHHHHHHHHHHHHHHH----HCCeecCCCChHhEEECCCCCEEEEeCcceEec
Confidence 99999997 59999998754 899999999999999999999 678999999999999999999999999999876
Q ss_pred CCCCCce-eeeccccCccccCCCccC-CCCcCcccchhhHHHHHHHHHhCCCCCCccccCcchHHHHHHhhCCCc---hh
Q 005040 579 GEGEDSV-IQTMTMATIGYMAPEYGS-EGIVSTKCDVYSYGVLLMETFTEKKPTDEMFTGEMSLRRWVKESLPHR---LT 653 (717)
Q Consensus 579 ~~~~~~~-~~~~~~~t~~y~aPE~~~-~~~~~~~~Dvws~G~il~el~tg~~p~~~~~~~~~~~~~~~~~~~~~~---~~ 653 (717)
....... ......||+.|+|||++. +..++.++||||+||++|||++|+.||......+ .+........... +.
T Consensus 179 ~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~DiwslG~il~ell~g~~pf~~~~~~~-~~~~i~~~~~~~~~~~~~ 257 (364)
T 3qyz_A 179 DPDHDHTGFLTEYVATRWYRAPEIMLNSKGYTKSIDIWSVGCILAEMLSNRPIFPGKHYLD-QLNHILGILGSPSQEDLN 257 (364)
T ss_dssp CGGGCBCCTTCCCCSCGGGCCHHHHHTBCSCSTHHHHHHHHHHHHHHHHSSCSSCCSSGGG-HHHHHHHHHCSCCHHHHH
T ss_pred CCCCCccccccccccccCCCCCHHhcCCCCCCcchhHHHHHHHHHHHHHCCCCCCCCChHH-HHHHHHHHhCCCCHHHHH
Confidence 4322111 123447899999999754 4558999999999999999999999997643221 2222221111110 00
Q ss_pred hhccccchhh---------hhhhhhhHHHHHHHHHHHhhccCCCCCCCCCHHHHHH
Q 005040 654 EVVDANLVRE---------EQAFSDKMDCLFSIMDLALDCCMDTPHKRIHMTDAAA 700 (717)
Q Consensus 654 ~~~~~~~~~~---------~~~~~~~~~~~~~l~~li~~cl~~~P~~Rpt~~ev~~ 700 (717)
...+...... .+.......++.++.+++.+||+.||++|||+.|+++
T Consensus 258 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~R~t~~e~l~ 313 (364)
T 3qyz_A 258 CIINLKARNYLLSLPHKNKVPWNRLFPNADSKALDLLDKMLTFNPHKRIEVEQALA 313 (364)
T ss_dssp TCCCHHHHHHHHTSCCCCCCCHHHHCTTSCHHHHHHHHHHTCSSTTTSCCHHHHHT
T ss_pred HhhhhhHHHHHHhcCCccCCCHHHhCCCCCHHHHHHHHHHcCCChhhCCCHHHHhc
Confidence 0000000000 0000001133567889999999999999999999986
No 211
>2pml_X PFPK7, Ser/Thr protein kinase; phosphorylati transferase, transferase; HET: ANP; 2.60A {Plasmodium falciparum} PDB: 2pmn_X* 2pmo_X*
Probab=100.00 E-value=1.6e-39 Score=342.91 Aligned_cols=264 Identities=23% Similarity=0.315 Sum_probs=206.3
Q ss_pred hccCCccccccccccEEEEEEEecCCCeEEEEEechhhHHH-----------------HHHHHHHHHHHHhcCCCceeeE
Q 005040 426 TDEFNECNLLGTGGFGSVYKGTLSDGTNVAIKIFNLQLERA-----------------FRSFDSECEILRNVRHRNLLKI 488 (717)
Q Consensus 426 ~~~~~~~~~lg~G~~g~V~~~~~~~~~~vavK~~~~~~~~~-----------------~~~~~~e~~~l~~l~hpniv~~ 488 (717)
.++|++.+.||+|+||.||+|.. +++.||+|++....... .+.+.+|++++++++||||+++
T Consensus 30 ~~~y~~~~~lg~G~~g~V~~~~~-~~~~vavK~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~~i~~~ 108 (348)
T 2pml_X 30 INDYRIIRTLNQGKFNKIILCEK-DNKFYALKKYEKSLLEKKRDFTKSNNDKISIKSKYDDFKNELQIITDIKNEYCLTC 108 (348)
T ss_dssp ETTEEEEEEEECCSSCCEEEEEE-TTEEEEEEEEEHHHHSSCEEECCCSSSSCCEEEHHHHHHHHHHHHTTCCCTTBCCC
T ss_pred cCceEEEEEEcCCCCeEEEEEEc-CCceEEEEEeecccccchhhhccccchhhhHHhHHHHHHHHHHHHHhCCCCCcceE
Confidence 36899999999999999999999 89999999997654221 1678899999999999999999
Q ss_pred eeeeecCCeeEEEEEccCCCCHHHH------HhhC-CCCCCHHHHHHHHHHHHHHHHHHhhcCCCCCeEecCCCCCCeee
Q 005040 489 LGSCSNLDFKALVLEFMPNGSLEKW------LYSH-NYFLDILQRLNIMIDVGSALEYLHHCHSSAPIIHCDLKPTNILL 561 (717)
Q Consensus 489 ~~~~~~~~~~~lv~e~~~~g~L~~~------l~~~-~~~~~~~~~~~i~~~i~~~l~~LH~~~~~~~ivH~dlk~~Nill 561 (717)
++++.+.+..++||||+++|+|.++ +... ...+++..+..++.|++.||.|||+ ..+|+||||||+||++
T Consensus 109 ~~~~~~~~~~~lv~e~~~~~~L~~~~~~~~~l~~~~~~~~~~~~~~~i~~qi~~~l~~lH~---~~~i~H~dl~p~Nil~ 185 (348)
T 2pml_X 109 EGIITNYDEVYIIYEYMENDSILKFDEYFFVLDKNYTCFIPIQVIKCIIKSVLNSFSYIHN---EKNICHRDVKPSNILM 185 (348)
T ss_dssp SEEEESSSEEEEEEECCTTCBSSEESSSEESSCSSSCCCCCHHHHHHHHHHHHHHHHHHHH---TSCEECCCCCGGGEEE
T ss_pred EEEEeeCCeEEEEEeccCCCcHHHHHHHhhhhhhccccCCCHHHHHHHHHHHHHHHHHHhc---cCCEeecCCChHhEEE
Confidence 9999999999999999999999998 6542 4568999999999999999999993 2789999999999999
Q ss_pred CCCCcEEEeeeccccccCCCCCceeeeccccCccccCCCccCCC-CcCc-ccchhhHHHHHHHHHhCCCCCCccccCcch
Q 005040 562 DENMVAHVSDFGISKLLGEGEDSVIQTMTMATIGYMAPEYGSEG-IVST-KCDVYSYGVLLMETFTEKKPTDEMFTGEMS 639 (717)
Q Consensus 562 ~~~~~~kl~Dfgl~~~~~~~~~~~~~~~~~~t~~y~aPE~~~~~-~~~~-~~Dvws~G~il~el~tg~~p~~~~~~~~~~ 639 (717)
+.++.+||+|||++...... ......||+.|+|||...+. .++. ++||||||+++|||++|+.||...... ..
T Consensus 186 ~~~~~~kl~dfg~~~~~~~~----~~~~~~~~~~y~aPE~~~~~~~~~~~~~Di~slG~il~~l~~g~~pf~~~~~~-~~ 260 (348)
T 2pml_X 186 DKNGRVKLSDFGESEYMVDK----KIKGSRGTYEFMPPEFFSNESSYNGAKVDIWSLGICLYVMFYNVVPFSLKISL-VE 260 (348)
T ss_dssp CTTSCEEECCCTTCEECBTT----EECSSCSCGGGCCGGGGSSCCCEEHHHHHHHHHHHHHHHHHHSSCSSCCSSCS-HH
T ss_pred cCCCcEEEeccccccccccc----cccCCCCCcCccCchhhcCCCCCCcchhhHHHHHHHHHHHHhCCCCCCCCCcH-HH
Confidence 99999999999999876432 23445789999999998877 6666 999999999999999999999764322 12
Q ss_pred HHHHHHhhC---CCchhhhccccchhhhhhhhhhHHHHHHHHHHHhhccCCCCCCCCCHHHHHH
Q 005040 640 LRRWVKESL---PHRLTEVVDANLVREEQAFSDKMDCLFSIMDLALDCCMDTPHKRIHMTDAAA 700 (717)
Q Consensus 640 ~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~cl~~~P~~Rpt~~ev~~ 700 (717)
....+.... +.............. .......++.++.+++.+||+.||++|||+.|+++
T Consensus 261 ~~~~i~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~l~~li~~~L~~dP~~Rps~~e~l~ 322 (348)
T 2pml_X 261 LFNNIRTKNIEYPLDRNHFLYPLTNKK--STCSNNFLSNEDIDFLKLFLRKNPAERITSEDALK 322 (348)
T ss_dssp HHHHHTSCCCCCCCSSSSSTTTTCC----------CCCHHHHHHHHHHCCSSGGGSCCHHHHHT
T ss_pred HHHHHhccCcCCccchhhhhccccccc--cccchhhcCHHHHHHHHHHccCChhhCCCHHHHhc
Confidence 222221111 100000000000000 00111234567899999999999999999999987
No 212
>2ycf_A Serine/threonine-protein kinase CHK2; transferase, anticancer, anticancer drug design; HET: YCF; 1.77A {Homo sapiens} PDB: 2yiq_A* 2w7x_A* 2ycq_A* 2ycs_A* 2w0j_A* 2yir_A* 2yit_A* 2wtj_A* 2cn8_A* 2wtc_A* 2wtd_A* 2wti_A* 2cn5_A* 2xbj_A* 2xm8_A* 2xm9_A* 2xk9_A* 2ycr_A*
Probab=100.00 E-value=7.8e-39 Score=333.70 Aligned_cols=252 Identities=27% Similarity=0.333 Sum_probs=198.3
Q ss_pred HhccCCccccccccccEEEEEEEec-CCCeEEEEEechhh--------HHHHHHHHHHHHHHHhcCCCceeeEeeeeecC
Q 005040 425 ATDEFNECNLLGTGGFGSVYKGTLS-DGTNVAIKIFNLQL--------ERAFRSFDSECEILRNVRHRNLLKILGSCSNL 495 (717)
Q Consensus 425 ~~~~~~~~~~lg~G~~g~V~~~~~~-~~~~vavK~~~~~~--------~~~~~~~~~e~~~l~~l~hpniv~~~~~~~~~ 495 (717)
..++|++.+.||+|+||.||+|... +++.||||++.... ......+.+|++++++++||||+++++++...
T Consensus 8 l~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~~ 87 (322)
T 2ycf_A 8 LRDEYIMSKTLGSGACGEVKLAFERKTCKKVAIKIISKRKFAIGSAREADPALNVETEIEILKKLNHPCIIKIKNFFDAE 87 (322)
T ss_dssp HHHHEEEEEEEEECSSEEEEEEEETTTTEEEEEEEECC---------------CHHHHHHHHHHCCCTTBCCEEEEEESS
T ss_pred hhhceeEeeEEecCCCEEEEEEEEcCCCcEEEEEEeehhhhhhcccccchhhhhHHHHHHHHHhCCCCCCceEeeEEcCC
Confidence 4578999999999999999999975 68899999986432 12234578899999999999999999998766
Q ss_pred CeeEEEEEccCCCCHHHHHhhCCCCCCHHHHHHHHHHHHHHHHHHhhcCCCCCeEecCCCCCCeeeCCCCc---EEEeee
Q 005040 496 DFKALVLEFMPNGSLEKWLYSHNYFLDILQRLNIMIDVGSALEYLHHCHSSAPIIHCDLKPTNILLDENMV---AHVSDF 572 (717)
Q Consensus 496 ~~~~lv~e~~~~g~L~~~l~~~~~~~~~~~~~~i~~~i~~~l~~LH~~~~~~~ivH~dlk~~Nill~~~~~---~kl~Df 572 (717)
. .++||||+++++|.+++.... .+++..+..++.|++.||.||| +.+|+||||||+||+++.++. +||+||
T Consensus 88 ~-~~lv~e~~~~~~L~~~~~~~~-~~~~~~~~~~~~qi~~~l~~lH----~~~ivH~dlkp~NIl~~~~~~~~~~kl~Df 161 (322)
T 2ycf_A 88 D-YYIVLELMEGGELFDKVVGNK-RLKEATCKLYFYQMLLAVQYLH----ENGIIHRDLKPENVLLSSQEEDCLIKITDF 161 (322)
T ss_dssp S-EEEEEECCTTEETHHHHSTTC-CCCHHHHHHHHHHHHHHHHHHH----HTTEECCCCSGGGEEESSSSSSCCEEECCC
T ss_pred c-eEEEEecCCCCcHHHHHhccC-CCCHHHHHHHHHHHHHHHHHHH----HCCeeccCCCHHHEEEecCCCCCeEEEccC
Confidence 5 799999999999999987654 4899999999999999999999 678999999999999987664 999999
Q ss_pred ccccccCCCCCceeeeccccCccccCCCcc---CCCCcCcccchhhHHHHHHHHHhCCCCCCccccCcchHHHHHHhhCC
Q 005040 573 GISKLLGEGEDSVIQTMTMATIGYMAPEYG---SEGIVSTKCDVYSYGVLLMETFTEKKPTDEMFTGEMSLRRWVKESLP 649 (717)
Q Consensus 573 gl~~~~~~~~~~~~~~~~~~t~~y~aPE~~---~~~~~~~~~Dvws~G~il~el~tg~~p~~~~~~~~~~~~~~~~~~~~ 649 (717)
|++....... ......||+.|+|||++ ....++.++||||||+++|||++|+.||....... .+...+.....
T Consensus 162 g~~~~~~~~~---~~~~~~gt~~y~aPE~~~~~~~~~~~~~~Di~slG~il~~l~~g~~pf~~~~~~~-~~~~~~~~~~~ 237 (322)
T 2ycf_A 162 GHSKILGETS---LMRTLCGTPTYLAPEVLVSVGTAGYNRAVDCWSLGVILFICLSGYPPFSEHRTQV-SLKDQITSGKY 237 (322)
T ss_dssp TTCEECCCCH---HHHHHHSCCTTCCHHHHHHTTTTTCTTHHHHHHHHHHHHHHHHSSCSSCSTTCSS-CHHHHHHHTCC
T ss_pred ccceeccccc---ccccccCCcCccCchhhccCCCCCCCchhhHHHHHHHHHHHHhCCCCCcccchHH-HHHHHHHhCcc
Confidence 9998764321 12334689999999985 45678999999999999999999999997643222 22222221111
Q ss_pred CchhhhccccchhhhhhhhhhHHHHHHHHHHHhhccCCCCCCCCCHHHHHH
Q 005040 650 HRLTEVVDANLVREEQAFSDKMDCLFSIMDLALDCCMDTPHKRIHMTDAAA 700 (717)
Q Consensus 650 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~cl~~~P~~Rpt~~ev~~ 700 (717)
.... .....++.++.+++.+||+.||++|||+.|+++
T Consensus 238 ~~~~--------------~~~~~~~~~~~~li~~~l~~dP~~Rps~~~~l~ 274 (322)
T 2ycf_A 238 NFIP--------------EVWAEVSEKALDLVKKLLVVDPKARFTTEEALR 274 (322)
T ss_dssp CCCH--------------HHHTTSCHHHHHHHHHHSCSSTTTSCCHHHHHT
T ss_pred ccCc--------------hhhhhcCHHHHHHHHHHcccCHhhCCCHHHHhh
Confidence 0000 001234567889999999999999999999985
No 213
>2xrw_A Mitogen-activated protein kinase 8; transcription, MAPK signaling pathways, linear binding motif; HET: ANP; 1.33A {Homo sapiens} PDB: 1ukh_A 1uki_A* 2xs0_A* 3elj_A* 2h96_A* 2gmx_A* 2g01_A* 2no3_A* 3o2m_A* 3o17_A* 3pze_A* 3g9l_X* 2p33_A* 3cgf_A* 3cgo_A* 3g90_X* 2ok1_A* 3g9n_A* 1pmn_A* 1pmq_A* ...
Probab=100.00 E-value=1.2e-38 Score=338.79 Aligned_cols=263 Identities=21% Similarity=0.222 Sum_probs=192.9
Q ss_pred hccCCccccccccccEEEEEEEec-CCCeEEEEEechhh--HHHHHHHHHHHHHHHhcCCCceeeEeeeeecCC------
Q 005040 426 TDEFNECNLLGTGGFGSVYKGTLS-DGTNVAIKIFNLQL--ERAFRSFDSECEILRNVRHRNLLKILGSCSNLD------ 496 (717)
Q Consensus 426 ~~~~~~~~~lg~G~~g~V~~~~~~-~~~~vavK~~~~~~--~~~~~~~~~e~~~l~~l~hpniv~~~~~~~~~~------ 496 (717)
.++|++.+.||+|+||.||+|... +++.||||++.... ....+.+.+|+.+++.++||||+++++++...+
T Consensus 24 ~~~y~~~~~lG~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~hpniv~~~~~~~~~~~~~~~~ 103 (371)
T 2xrw_A 24 LKRYQNLKPIGSGAQGIVCAAYDAILERNVAIKKLSRPFQNQTHAKRAYRELVLMKCVNHKNIIGLLNVFTPQKSLEEFQ 103 (371)
T ss_dssp ETTEEEEEEEEECSSEEEEEEEETTTTEEEEEEEEECTTSSHHHHHHHHHHHHHHHHCCCTTBCCEEEEECSCCSTTTCC
T ss_pred hhheeEeeeeEecCCEEEEEEEECCCCceEEEEEeccccCChHHHHHHHHHHHHHHhcCCCCccceEEeecccccccccc
Confidence 368999999999999999999875 78999999986532 344567889999999999999999999987654
Q ss_pred eeEEEEEccCCCCHHHHHhhCCCCCCHHHHHHHHHHHHHHHHHHhhcCCCCCeEecCCCCCCeeeCCCCcEEEeeecccc
Q 005040 497 FKALVLEFMPNGSLEKWLYSHNYFLDILQRLNIMIDVGSALEYLHHCHSSAPIIHCDLKPTNILLDENMVAHVSDFGISK 576 (717)
Q Consensus 497 ~~~lv~e~~~~g~L~~~l~~~~~~~~~~~~~~i~~~i~~~l~~LH~~~~~~~ivH~dlk~~Nill~~~~~~kl~Dfgl~~ 576 (717)
..++||||++ |+|.+++.. .+++..+..++.|++.||.||| +.+|+||||||+||+++.++.+||+|||+++
T Consensus 104 ~~~lv~e~~~-~~l~~~~~~---~~~~~~~~~i~~qi~~al~~lH----~~~ivH~Dlkp~NIl~~~~~~~kl~Dfg~a~ 175 (371)
T 2xrw_A 104 DVYIVMELMD-ANLCQVIQM---ELDHERMSYLLYQMLCGIKHLH----SAGIIHRDLKPSNIVVKSDCTLKILDFGLAR 175 (371)
T ss_dssp EEEEEEECCS-EEHHHHHHS---CCCHHHHHHHHHHHHHHHHHHH----HTTCCCSCCCGGGEEECTTSCEEECCCCC--
T ss_pred ceEEEEEcCC-CCHHHHHhh---ccCHHHHHHHHHHHHHHHHHHH----HCCeecccCCHHHEEEcCCCCEEEEEeeccc
Confidence 7899999997 588888863 3889999999999999999999 6789999999999999999999999999998
Q ss_pred ccCCCCCceeeeccccCccccCCCccCCCCcCcccchhhHHHHHHHHHhCCCCCCccccCcchHHHHHHhhCCCchhhhc
Q 005040 577 LLGEGEDSVIQTMTMATIGYMAPEYGSEGIVSTKCDVYSYGVLLMETFTEKKPTDEMFTGEMSLRRWVKESLPHRLTEVV 656 (717)
Q Consensus 577 ~~~~~~~~~~~~~~~~t~~y~aPE~~~~~~~~~~~Dvws~G~il~el~tg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~ 656 (717)
...... ......||+.|+|||++.+..++.++||||+||++|||++|+.||.+.... ..+..... .......+..
T Consensus 176 ~~~~~~---~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~el~~g~~pf~~~~~~-~~~~~i~~-~~~~~~~~~~ 250 (371)
T 2xrw_A 176 TAGTSF---MMTPYVVTRYYRAPEVILGMGYKENVDIWSVGCIMGEMIKGGVLFPGTDHI-DQWNKVIE-QLGTPCPEFM 250 (371)
T ss_dssp -----------------CTTCCHHHHTTCCCCTTHHHHHHHHHHHHHHHSSCSSCCSSHH-HHHHHHHC--CCCCCHHHH
T ss_pred cccccc---ccCCceecCCccCHHHhcCCCCCchHhHHHHHHHHHHHHhCCCCCCCCCHH-HHHHHHHH-HhCCCCHHHH
Confidence 764321 223456899999999999999999999999999999999999999763211 11111111 0000000000
Q ss_pred ---ccc-------------------chhh--hhhhhhhHHHHHHHHHHHhhccCCCCCCCCCHHHHHHH
Q 005040 657 ---DAN-------------------LVRE--EQAFSDKMDCLFSIMDLALDCCMDTPHKRIHMTDAAAK 701 (717)
Q Consensus 657 ---~~~-------------------~~~~--~~~~~~~~~~~~~l~~li~~cl~~~P~~Rpt~~ev~~~ 701 (717)
.+. +... ..........+.++.+++.+||..||++|||++|+++.
T Consensus 251 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~mL~~dP~~R~t~~e~l~h 319 (371)
T 2xrw_A 251 KKLQPTVRTYVENRPKYAGYSFEKLFPDVLFPADSEHNKLKASQARDLLSKMLVIDASKRISVDEALQH 319 (371)
T ss_dssp TTSCHHHHHHHHSSCCCCCCCHHHHSCGGGSCCSSHHHHHHHHHHHHHHHHHSCSSGGGSCCHHHHHHS
T ss_pred HHhhhHHHHHHhhCccccccchhhhcccccCcccccccccccHHHHHHHHHHCcCChhhCCCHHHHhCC
Confidence 000 0000 00001112346779999999999999999999999873
No 214
>3an0_A Dual specificity mitogen-activated protein kinase; auto inhibition state, activation helix, serine/threonine-PR kinase; HET: ANK; 2.60A {Homo sapiens} PDB: 3vn9_A*
Probab=100.00 E-value=4.7e-39 Score=338.15 Aligned_cols=250 Identities=25% Similarity=0.329 Sum_probs=197.7
Q ss_pred hccCCccccccccccEEEEEEEec-CCCeEEEEEechhh-HHHHHHHHHHHHH-HHhcCCCceeeEeeeeecCCeeEEEE
Q 005040 426 TDEFNECNLLGTGGFGSVYKGTLS-DGTNVAIKIFNLQL-ERAFRSFDSECEI-LRNVRHRNLLKILGSCSNLDFKALVL 502 (717)
Q Consensus 426 ~~~~~~~~~lg~G~~g~V~~~~~~-~~~~vavK~~~~~~-~~~~~~~~~e~~~-l~~l~hpniv~~~~~~~~~~~~~lv~ 502 (717)
.++|+..+.||+|+||.||+|... +|+.||||++.... ......+..|..+ ++.++||||+++++++.+.+..++||
T Consensus 50 ~~~~~~~~~lG~G~~g~Vy~~~~~~~~~~vavK~~~~~~~~~~~~~~~~e~~~~~~~~~h~~iv~~~~~~~~~~~~~lv~ 129 (340)
T 3an0_A 50 ADDLEPIMELGRGAYGVVEKMRHVPSGQIMAVKRIRATVNSQEQKRLLMDLDISMRTVDCPFTVTFYGALFREGDVWICM 129 (340)
T ss_dssp SSCEEEEEEEEECSSEEEEEEEETTTTEEEEEEEECSCCCCHHHHHHHHHHHHHHTTCCCTTTCCEEEEEECSSCEEEEE
T ss_pred hhheeEeeEecccCCEEEEEEEEcCCCCEEEEEEeccccCcHHHHHHHHHHHHHHhhcCCCcEEEEeeEEEeCCcEEEEH
Confidence 468889999999999999999974 79999999986543 2233445555555 77889999999999999999999999
Q ss_pred EccCCCCHHHHHhh---CCCCCCHHHHHHHHHHHHHHHHHHhhcCCCC-CeEecCCCCCCeeeCCCCcEEEeeecccccc
Q 005040 503 EFMPNGSLEKWLYS---HNYFLDILQRLNIMIDVGSALEYLHHCHSSA-PIIHCDLKPTNILLDENMVAHVSDFGISKLL 578 (717)
Q Consensus 503 e~~~~g~L~~~l~~---~~~~~~~~~~~~i~~~i~~~l~~LH~~~~~~-~ivH~dlk~~Nill~~~~~~kl~Dfgl~~~~ 578 (717)
||+++ +|.+++.. ....+++..+..++.|++.||+||| +. +|+||||||+||+++.++.+||+|||++...
T Consensus 130 e~~~~-~L~~~l~~~~~~~~~l~~~~~~~i~~qi~~~l~~lH----~~~~ivH~Dlkp~NIl~~~~~~~kl~Dfg~~~~~ 204 (340)
T 3an0_A 130 ELMDT-SLDKFYKQVIDKGQTIPEDILGKIAVSIVKALEHLH----SKLSVIHRDVKPSNVLINALGQVKMCDFGISGYL 204 (340)
T ss_dssp CCCSE-EHHHHHHHHHHTSCCCCHHHHHHHHHHHHHHHHHHH----HHTCCCCCSCCSTTEEECSTTCEEECCCSHHHHH
T ss_pred HHhhC-cHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHh----hcCCeecCCCCHHHEEECCCCCEEEeeCCCceec
Confidence 99975 99998874 4556999999999999999999999 44 8999999999999999999999999999876
Q ss_pred CCCCCceeeeccccCccccCCCccC----CCCcCcccchhhHHHHHHHHHhCCCCCCccccCcchHHHHHHhhCCCchhh
Q 005040 579 GEGEDSVIQTMTMATIGYMAPEYGS----EGIVSTKCDVYSYGVLLMETFTEKKPTDEMFTGEMSLRRWVKESLPHRLTE 654 (717)
Q Consensus 579 ~~~~~~~~~~~~~~t~~y~aPE~~~----~~~~~~~~Dvws~G~il~el~tg~~p~~~~~~~~~~~~~~~~~~~~~~~~~ 654 (717)
... .......||+.|+|||++. ...++.++|||||||++|||++|+.||.........+........+.
T Consensus 205 ~~~---~~~~~~~gt~~y~aPE~~~~~~~~~~~~~~~Di~slG~il~el~tg~~p~~~~~~~~~~~~~~~~~~~~~---- 277 (340)
T 3an0_A 205 VDS---VAKTIDAGCKPYMAPERINPELNQKGYSVKSDIWSLGITMIELAILRFPYDSWGTPFQQLKQVVEEPSPQ---- 277 (340)
T ss_dssp SCH---HHHHHSSCCCCCCCHHHHSCCTTCCSCCHHHHHHHHHHHHHHHHHTSCSSCCCSCHHHHHHHHHHSCCCC----
T ss_pred ccc---cccccCCCCccccCccccccccccCCCCchhhHHHHHHHHHHHHHCCCCCccccchHHHHHHHhcCCCCC----
Confidence 432 1123346899999999853 45789999999999999999999999975322211111111111000
Q ss_pred hccccchhhhhhhhhhHHHHHHHHHHHhhccCCCCCCCCCHHHHHH
Q 005040 655 VVDANLVREEQAFSDKMDCLFSIMDLALDCCMDTPHKRIHMTDAAA 700 (717)
Q Consensus 655 ~~~~~~~~~~~~~~~~~~~~~~l~~li~~cl~~~P~~Rpt~~ev~~ 700 (717)
. ....++.++.+++.+||+.||++|||+.|+++
T Consensus 278 -----~--------~~~~~~~~~~~li~~~l~~dp~~Rps~~ell~ 310 (340)
T 3an0_A 278 -----L--------PADKFSAEFVDFTSQCLKKNSKERPTYPELMQ 310 (340)
T ss_dssp -----C--------CGGGSCHHHHHHHHHHTCSSGGGSCCHHHHTT
T ss_pred -----C--------CcccCCHHHHHHHHHHccCCcccCcCHHHHhc
Confidence 0 01124566889999999999999999999987
No 215
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=100.00 E-value=1.5e-38 Score=361.57 Aligned_cols=332 Identities=17% Similarity=0.257 Sum_probs=288.9
Q ss_pred CCcccc--CCCCCcEEECCCCcceecCCcCCCCCCCCCEEEccccc-ccC--ccCCcccccccccccCccCCcEEeccCC
Q 005040 4 IPNSIT--NATKLIGLDLGLNSFSGHIPNTFGNLRHLSVLSLMMNN-LTT--ESSSADQWSFLSSLTNCRNLANLALASN 78 (717)
Q Consensus 4 iP~~~~--~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~-l~~--~~~~~~~~~~~~~l~~l~~L~~L~L~~N 78 (717)
||++++ ++++|++|+|++|++.+.+|..|+++++|++|+|++|+ ++. ++..... +..+..+++|++|+|++|
T Consensus 239 ip~~l~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~~l~~~~lp~~~~~---L~~~~~l~~L~~L~L~~n 315 (636)
T 4eco_A 239 KTEDLKWDNLKDLTDVEVYNCPNLTKLPTFLKALPEMQLINVACNRGISGEQLKDDWQA---LADAPVGEKIQIIYIGYN 315 (636)
T ss_dssp TTSCCCGGGCTTCCEEEEECCTTCSSCCTTTTTCSSCCEEECTTCTTSCHHHHHHHHHH---HHHSGGGGTCCEEECCSS
T ss_pred CchhhhhcccCCCCEEEecCCcCCccChHHHhcCCCCCEEECcCCCCCccccchHHHHh---hhccccCCCCCEEECCCC
Confidence 999999 99999999999999999999999999999999999998 875 4422100 111234499999999999
Q ss_pred CCcccCCc--chhccccccceeeecCCcceecCCccccCCCCCcEEEccCCCCcccCCccccccCC-CCEEeccCCcccc
Q 005040 79 PLGGILPP--LIGNFSASLQNIYAFECKLGGSIPKEIGNLRGLIVLSLGFNDLNGTIPTSIGTLQQ-LQGFYVPENNLQG 155 (717)
Q Consensus 79 ~l~~~~~~--~~~~l~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~-L~~L~l~~n~i~~ 155 (717)
+++ .+|. .+..+ ++|++|++++|++.+.+| .|..+++|++|+|++|+++ .+|..+.++++ |++|++++|.++
T Consensus 316 ~l~-~ip~~~~l~~l-~~L~~L~L~~N~l~g~ip-~~~~l~~L~~L~L~~N~l~-~lp~~l~~l~~~L~~L~Ls~N~l~- 390 (636)
T 4eco_A 316 NLK-TFPVETSLQKM-KKLGMLECLYNQLEGKLP-AFGSEIKLASLNLAYNQIT-EIPANFCGFTEQVENLSFAHNKLK- 390 (636)
T ss_dssp CCS-SCCCHHHHTTC-TTCCEEECCSCCCEEECC-CCEEEEEESEEECCSSEEE-ECCTTSEEECTTCCEEECCSSCCS-
T ss_pred cCC-ccCchhhhccC-CCCCEEeCcCCcCccchh-hhCCCCCCCEEECCCCccc-cccHhhhhhcccCcEEEccCCcCc-
Confidence 999 7787 88888 689999999999999999 9999999999999999999 78888999999 999999999999
Q ss_pred cCCccccCCC--CCCEEeccCCcCcccCCcccc-------CCCCCCeEEecCccccCCCChhhhcccCCCeEEccCCcCc
Q 005040 156 YVPHDLCHLE--RLNILNLSGNKLSGAIPQCLA-------SLTSLRSLYLQSNKLSSSLPSSLWSLEYILRINLSSNSLK 226 (717)
Q Consensus 156 ~~~~~~~~l~--~L~~L~L~~n~l~~~~~~~~~-------~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~ 226 (717)
.+|..+..+. +|++|+|++|.+++..|..|. .+++|+.|+|++|+++...+..+..+++|++|+|++|.++
T Consensus 391 ~lp~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~~~~~~~~~~~L~~L~Ls~N~l~~lp~~~~~~l~~L~~L~Ls~N~l~ 470 (636)
T 4eco_A 391 YIPNIFDAKSVSVMSAIDFSYNEIGSVDGKNFDPLDPTPFKGINVSSINLSNNQISKFPKELFSTGSPLSSINLMGNMLT 470 (636)
T ss_dssp SCCSCCCTTCSSCEEEEECCSSCTTTTTTCSSCTTCSSCCCCCCEEEEECCSSCCCSCCTHHHHTTCCCSEEECCSSCCS
T ss_pred ccchhhhhcccCccCEEECcCCcCCCcchhhhcccccccccCCCCCEEECcCCccCcCCHHHHccCCCCCEEECCCCCCC
Confidence 6777777755 899999999999998888888 7889999999999999665566677999999999999999
Q ss_pred ccCCccccCCC-------CCCeEEccCCCCCCCCccccc--CCcccccccccCccccCCCCccccccCccceEec-----
Q 005040 227 GTLPSNIQKLN-------VLIDLDLSRNQLSSDIPSTIG--TLKNLETLSLAGNQFQGPIPESVGNLISLESLDF----- 292 (717)
Q Consensus 227 ~~~~~~~~~l~-------~L~~L~l~~N~l~~~~~~~~~--~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~L----- 292 (717)
...+..+.... +|+.|+|++|.++ .+|..+. .+++|+.|+|++|++++ +|..+.++++|+.|+|
T Consensus 471 ~i~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~~~l~~L~~L~Ls~N~l~~-ip~~~~~l~~L~~L~Ls~N~~ 548 (636)
T 4eco_A 471 EIPKNSLKDENENFKNTYLLTSIDLRFNKLT-KLSDDFRATTLPYLVGIDLSYNSFSK-FPTQPLNSSTLKGFGIRNQRD 548 (636)
T ss_dssp BCCSSSSEETTEECTTGGGCCEEECCSSCCC-BCCGGGSTTTCTTCCEEECCSSCCSS-CCCGGGGCSSCCEEECCSCBC
T ss_pred CcCHHHhccccccccccCCccEEECcCCcCC-ccChhhhhccCCCcCEEECCCCCCCC-cChhhhcCCCCCEEECCCCcc
Confidence 44444454443 9999999999999 5777776 99999999999999997 8999999999999999
Q ss_pred -cCCCCCCCCcccccccccccEEEccCCcccccccccccccccccccccCCccccC
Q 005040 293 -SNNNLSGKIPKSLEALSHLKQFNVSHNRLEGEIPVKGSFKDFSAQSYFGNYALCG 347 (717)
Q Consensus 293 -~~N~~~~~~~~~~~~l~~L~~L~l~~N~l~~~~p~~~~~~~~~~~~~~~n~~~c~ 347 (717)
++|++.+.+|..+..+++|+.|+|++|++ +.+|.. ..+.+..+.+.+|+..|-
T Consensus 549 ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l-~~ip~~-~~~~L~~L~Ls~N~l~~~ 602 (636)
T 4eco_A 549 AQGNRTLREWPEGITLCPSLTQLQIGSNDI-RKVNEK-ITPNISVLDIKDNPNISI 602 (636)
T ss_dssp TTCCBCCCCCCTTGGGCSSCCEEECCSSCC-CBCCSC-CCTTCCEEECCSCTTCEE
T ss_pred cccCcccccChHHHhcCCCCCEEECCCCcC-CccCHh-HhCcCCEEECcCCCCccc
Confidence 56888889999999999999999999999 667764 336777788888877663
No 216
>3lm5_A Serine/threonine-protein kinase 17B; STK17B, serine/threonine kinase 17B, DRAK2, DAP kinase relat apoptosis-inducing protein kinase 2; HET: QUE; 2.29A {Homo sapiens} PDB: 3lm0_A*
Probab=100.00 E-value=2.4e-39 Score=338.03 Aligned_cols=261 Identities=19% Similarity=0.222 Sum_probs=205.3
Q ss_pred CCHHHHHHHhccCCcc-ccccccccEEEEEEEec-CCCeEEEEEechhh--HHHHHHHHHHHHHHHhc-CCCceeeEeee
Q 005040 417 TSYLDIRRATDEFNEC-NLLGTGGFGSVYKGTLS-DGTNVAIKIFNLQL--ERAFRSFDSECEILRNV-RHRNLLKILGS 491 (717)
Q Consensus 417 ~~~~~~~~~~~~~~~~-~~lg~G~~g~V~~~~~~-~~~~vavK~~~~~~--~~~~~~~~~e~~~l~~l-~hpniv~~~~~ 491 (717)
..|...+...++|.+. +.||+|+||.||+|... +++.||+|++.... ......+.+|+.+++.+ +||||++++++
T Consensus 18 ~~~~~~~~~~~~y~~~~~~lG~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~e~~~l~~l~~~~~iv~~~~~ 97 (327)
T 3lm5_A 18 LYFQSMENFNNFYILTSKELGRGKFAVVRQCISKSTGQEYAAKFLKKRRRGQDCRAEILHEIAVLELAKSCPRVINLHEV 97 (327)
T ss_dssp CCSBCHHHHHHHEEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEESEETTEECHHHHHHHHHHHHHTTTCTTBCCEEEE
T ss_pred hHHHHHHhhhhEEeeccceeCCCCCeEEEEEEECCCCCEEEEEEEehhhcchHHHHHHHHHHHHHHhccCCCCEEEEEEE
Confidence 3344455667788887 88999999999999976 79999999987543 22346788899999999 56999999999
Q ss_pred eecCCeeEEEEEccCCCCHHHHHhhC-CCCCCHHHHHHHHHHHHHHHHHHhhcCCCCCeEecCCCCCCeeeCC---CCcE
Q 005040 492 CSNLDFKALVLEFMPNGSLEKWLYSH-NYFLDILQRLNIMIDVGSALEYLHHCHSSAPIIHCDLKPTNILLDE---NMVA 567 (717)
Q Consensus 492 ~~~~~~~~lv~e~~~~g~L~~~l~~~-~~~~~~~~~~~i~~~i~~~l~~LH~~~~~~~ivH~dlk~~Nill~~---~~~~ 567 (717)
+.+.+..++||||+++|+|.+++... ...+++..+..++.|++.||+||| +.+|+||||||+||+++. ++.+
T Consensus 98 ~~~~~~~~lv~e~~~~~~L~~~~~~~~~~~~~~~~~~~i~~ql~~~L~~LH----~~givH~Dikp~NIl~~~~~~~~~~ 173 (327)
T 3lm5_A 98 YENTSEIILILEYAAGGEIFSLCLPELAEMVSENDVIRLIKQILEGVYYLH----QNNIVHLDLKPQNILLSSIYPLGDI 173 (327)
T ss_dssp EECSSEEEEEEECCTTEEGGGGGSSCC-CCCCHHHHHHHHHHHHHHHHHHH----HTTEECSCCCGGGEEESCBTTBCCE
T ss_pred EEeCCeEEEEEEecCCCcHHHHHHHhcccCCCHHHHHHHHHHHHHHHHHHH----HCCeecCcCChHHEEEecCCCCCcE
Confidence 99999999999999999999998643 355899999999999999999999 678999999999999997 7899
Q ss_pred EEeeeccccccCCCCCceeeeccccCccccCCCccCCCCcCcccchhhHHHHHHHHHhCCCCCCccccCcchHHHHHHhh
Q 005040 568 HVSDFGISKLLGEGEDSVIQTMTMATIGYMAPEYGSEGIVSTKCDVYSYGVLLMETFTEKKPTDEMFTGEMSLRRWVKES 647 (717)
Q Consensus 568 kl~Dfgl~~~~~~~~~~~~~~~~~~t~~y~aPE~~~~~~~~~~~Dvws~G~il~el~tg~~p~~~~~~~~~~~~~~~~~~ 647 (717)
||+|||++........ .....||+.|+|||++.+..++.++||||+|+++|||++|+.||......+ ....+...
T Consensus 174 kL~Dfg~a~~~~~~~~---~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~~ll~g~~pf~~~~~~~--~~~~i~~~ 248 (327)
T 3lm5_A 174 KIVDFGMSRKIGHACE---LREIMGTPEYLAPEILNYDPITTATDMWNIGIIAYMLLTHTSPFVGEDNQE--TYLNISQV 248 (327)
T ss_dssp EECCGGGCEEC------------CCCGGGCCHHHHTTCCCCTHHHHHHHHHHHHHHHHSSCSSCCSSHHH--HHHHHHHT
T ss_pred EEeeCccccccCCccc---cccccCCcCccCCeeecCCCCCchhhHHHHHHHHHHHHhCCCCCCCCCchH--HHHHHHhc
Confidence 9999999987643322 233568999999999999999999999999999999999999997632211 11111111
Q ss_pred CCCchhhhccccchhhhhhhhhhHHHHHHHHHHHhhccCCCCCCCCCHHHHHH
Q 005040 648 LPHRLTEVVDANLVREEQAFSDKMDCLFSIMDLALDCCMDTPHKRIHMTDAAA 700 (717)
Q Consensus 648 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~cl~~~P~~Rpt~~ev~~ 700 (717)
.... . ......++..+.+++.+||+.||++|||++|+++
T Consensus 249 ~~~~---------~-----~~~~~~~~~~~~~li~~~L~~dP~~Rpt~~~ll~ 287 (327)
T 3lm5_A 249 NVDY---------S-----EETFSSVSQLATDFIQSLLVKNPEKRPTAEICLS 287 (327)
T ss_dssp CCCC---------C-----TTTTTTSCHHHHHHHHHHSCSSGGGSCCHHHHTT
T ss_pred cccc---------C-----chhhcccCHHHHHHHHHHcCCChhhCcCHHHHhC
Confidence 0000 0 0011134466889999999999999999999975
No 217
>3cek_A Dual specificity protein kinase TTK; HMPS1, PYT, ESK, phosphotyros picked threonine kinase, SGC, structural genomics consortiu binding; HET: 7PE; 2.30A {Homo sapiens} PDB: 3gfw_A* 3h9f_A* 2x9e_A* 3hmp_A* 3hmn_A* 3hmo_A*
Probab=100.00 E-value=8.5e-39 Score=332.07 Aligned_cols=253 Identities=23% Similarity=0.349 Sum_probs=196.2
Q ss_pred HhccCCccccccccccEEEEEEEecCCCeEEEEEechhh--HHHHHHHHHHHHHHHhcC--CCceeeEeeeeecCCeeEE
Q 005040 425 ATDEFNECNLLGTGGFGSVYKGTLSDGTNVAIKIFNLQL--ERAFRSFDSECEILRNVR--HRNLLKILGSCSNLDFKAL 500 (717)
Q Consensus 425 ~~~~~~~~~~lg~G~~g~V~~~~~~~~~~vavK~~~~~~--~~~~~~~~~e~~~l~~l~--hpniv~~~~~~~~~~~~~l 500 (717)
..++|++.+.||+|+||.||+|...+++.||||++.... ....+.+.+|++++++++ ||||+++++++.+.+..++
T Consensus 26 ~~~~y~~~~~lg~G~~g~Vy~~~~~~~~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~~~~~~iv~~~~~~~~~~~~~l 105 (313)
T 3cek_A 26 KGRIYSILKQIGSGGSSKVFQVLNEKKQIYAIKYVNLEEADNQTLDSYRNEIAYLNKLQQHSDKIIRLYDYEITDQYIYM 105 (313)
T ss_dssp TTEEEEEEEEEECCSSEEEEEEECTTCCEEEEEEEECSSCCHHHHHHHHHHHHHHHHHGGGCTTBCCEEEEEECSSEEEE
T ss_pred ccceEEEEEEecCCCCEEEEEEEcCCCcEEEEEEeccccccccchHHHHHHHHHHHhccccCCceEEEEEEeecCCEEEE
Confidence 347899999999999999999998889999999986432 445577889999999997 5999999999999999999
Q ss_pred EEEccCCCCHHHHHhhCCCCCCHHHHHHHHHHHHHHHHHHhhcCCCCCeEecCCCCCCeeeCCCCcEEEeeeccccccCC
Q 005040 501 VLEFMPNGSLEKWLYSHNYFLDILQRLNIMIDVGSALEYLHHCHSSAPIIHCDLKPTNILLDENMVAHVSDFGISKLLGE 580 (717)
Q Consensus 501 v~e~~~~g~L~~~l~~~~~~~~~~~~~~i~~~i~~~l~~LH~~~~~~~ivH~dlk~~Nill~~~~~~kl~Dfgl~~~~~~ 580 (717)
||| +.+++|.+++.... .+++..+..++.|+++||.||| +.+|+||||||+||++++ +.+||+|||++.....
T Consensus 106 v~e-~~~~~L~~~l~~~~-~~~~~~~~~i~~qi~~aL~~LH----~~~ivH~dlkp~NIl~~~-~~~kL~Dfg~~~~~~~ 178 (313)
T 3cek_A 106 VME-CGNIDLNSWLKKKK-SIDPWERKSYWKNMLEAVHTIH----QHGIVHSDLKPANFLIVD-GMLKLIDFGIANQMQP 178 (313)
T ss_dssp EEC-CCSEEHHHHHHHCS-SCCHHHHHHHHHHHHHHHHHHH----HTTCCCCCCCGGGEEEET-TEEEECCCSSSCC---
T ss_pred EEe-cCCCcHHHHHHhcC-CCCHHHHHHHHHHHHHHHHHHH----HCCceecCCCcccEEEEC-CeEEEeeccccccccC
Confidence 999 55789999998754 4899999999999999999999 678999999999999965 8999999999987654
Q ss_pred CCCceeeeccccCccccCCCccCC-----------CCcCcccchhhHHHHHHHHHhCCCCCCccccCcchHHHHHHhhCC
Q 005040 581 GEDSVIQTMTMATIGYMAPEYGSE-----------GIVSTKCDVYSYGVLLMETFTEKKPTDEMFTGEMSLRRWVKESLP 649 (717)
Q Consensus 581 ~~~~~~~~~~~~t~~y~aPE~~~~-----------~~~~~~~Dvws~G~il~el~tg~~p~~~~~~~~~~~~~~~~~~~~ 649 (717)
...........||+.|+|||.+.+ ..++.++||||||+++|||++|+.||...................
T Consensus 179 ~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~~~~~~~~~~~Di~slG~il~el~~g~~pf~~~~~~~~~~~~~~~~~~~ 258 (313)
T 3cek_A 179 DTTSVVKDSQVGTVNYMPPEAIKDMSSSRENGKSKSKISPKSDVWSLGCILYYMTYGKTPFQQIINQISKLHAIIDPNHE 258 (313)
T ss_dssp -----------CCGGGCCHHHHTTCC----------CCCHHHHHHHHHHHHHHHHHSSCTTTTCCSHHHHHHHHHCTTSC
T ss_pred ccccccccCCCCCCCcCCHHHHhhcccccccccccccCCchHHHHHHHHHHHHHHhCCCchhhHHHHHHHHHHHHhcccc
Confidence 433333344568999999998765 578899999999999999999999997533221111111111100
Q ss_pred CchhhhccccchhhhhhhhhhHHHHHHHHHHHhhccCCCCCCCCCHHHHHHH
Q 005040 650 HRLTEVVDANLVREEQAFSDKMDCLFSIMDLALDCCMDTPHKRIHMTDAAAK 701 (717)
Q Consensus 650 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~cl~~~P~~Rpt~~ev~~~ 701 (717)
.. + +..++.++.+++.+||+.||++|||+.|+++.
T Consensus 259 ~~--------~---------~~~~~~~l~~li~~~l~~dp~~Rps~~ell~h 293 (313)
T 3cek_A 259 IE--------F---------PDIPEKDLQDVLKCCLKRDPKQRISIPELLAH 293 (313)
T ss_dssp CC--------C---------CCCSCHHHHHHHHHHTCSSTTTSCCHHHHHTS
T ss_pred cC--------C---------cccchHHHHHHHHHHccCCcccCcCHHHHhcC
Confidence 00 0 01123567899999999999999999999864
No 218
>3kvw_A DYRK2, dual specificity tyrosine-phosphorylation-regulat 2; KI-(Y)-phosphorylation REG kinase 2, PSK-H2, kinase, structural genomics consortium; HET: SEP PTR IRB; 2.28A {Homo sapiens} PDB: 3k2l_A* 4azf_A*
Probab=100.00 E-value=1.3e-38 Score=344.35 Aligned_cols=197 Identities=24% Similarity=0.303 Sum_probs=172.1
Q ss_pred hccCCccccccccccEEEEEEEec-CCCeEEEEEechhhHHHHHHHHHHHHHHHhc------CCCceeeEeeeeecCCee
Q 005040 426 TDEFNECNLLGTGGFGSVYKGTLS-DGTNVAIKIFNLQLERAFRSFDSECEILRNV------RHRNLLKILGSCSNLDFK 498 (717)
Q Consensus 426 ~~~~~~~~~lg~G~~g~V~~~~~~-~~~~vavK~~~~~~~~~~~~~~~e~~~l~~l------~hpniv~~~~~~~~~~~~ 498 (717)
..+|++.+.||+|+||.||+|... +++.||||++.... ...+.+.+|+++++.+ +|+||+++++++......
T Consensus 96 ~~ry~~~~~LG~G~fg~V~~a~~~~~~~~vAvK~~~~~~-~~~~~~~~E~~~l~~l~~~~~~~~~~iv~~~~~~~~~~~~ 174 (429)
T 3kvw_A 96 AYRYEVLKVIGKGSFGQVVKAYDHKVHQHVALKMVRNEK-RFHRQAAEEIRILEHLRKQDKDNTMNVIHMLENFTFRNHI 174 (429)
T ss_dssp TTTEEEEEEEEESSSEEEEEEEETTTTEEEEEEEECSCH-HHHHHHHHHHHHHHHHHTTCTTSCSCBCCEEEEEEETTEE
T ss_pred cCcEEEEEEcccCccEEEEEEEECCCCcEEEEEEECCcc-chHHHHHHHHHHHHHHhhccccCCcCEEEEEeecccCCeE
Confidence 457999999999999999999875 68999999997543 3345677788888887 577999999999999999
Q ss_pred EEEEEccCCCCHHHHHhhCC-CCCCHHHHHHHHHHHHHHHHHHhhcCCCCCeEecCCCCCCeeeCCCCc--EEEeeeccc
Q 005040 499 ALVLEFMPNGSLEKWLYSHN-YFLDILQRLNIMIDVGSALEYLHHCHSSAPIIHCDLKPTNILLDENMV--AHVSDFGIS 575 (717)
Q Consensus 499 ~lv~e~~~~g~L~~~l~~~~-~~~~~~~~~~i~~~i~~~l~~LH~~~~~~~ivH~dlk~~Nill~~~~~--~kl~Dfgl~ 575 (717)
++||||+. ++|.+++.... ..+++..+..++.|++.||+||| +.+|+||||||+|||++.++. +||+|||++
T Consensus 175 ~lv~e~~~-~~L~~~l~~~~~~~~~~~~~~~i~~qi~~aL~~LH----~~~ivHrDlKp~NILl~~~~~~~vkL~DFG~a 249 (429)
T 3kvw_A 175 CMTFELLS-MNLYELIKKNKFQGFSLPLVRKFAHSILQCLDALH----KNRIIHCDLKPENILLKQQGRSGIKVIDFGSS 249 (429)
T ss_dssp EEEECCCC-CBHHHHHHHTTTCCCCHHHHHHHHHHHHHHHHHHH----HHTEECSCCSGGGEEESSTTSCCEEECCCTTC
T ss_pred EEEEeccC-CCHHHHHHhccCCCCCHHHHHHHHHHHHHHHHHHH----HCCeecCCCCHHHeEEccCCCcceEEeecccc
Confidence 99999996 69999998654 44899999999999999999999 578999999999999999887 999999999
Q ss_pred cccCCCCCceeeeccccCccccCCCccCCCCcCcccchhhHHHHHHHHHhCCCCCCcc
Q 005040 576 KLLGEGEDSVIQTMTMATIGYMAPEYGSEGIVSTKCDVYSYGVLLMETFTEKKPTDEM 633 (717)
Q Consensus 576 ~~~~~~~~~~~~~~~~~t~~y~aPE~~~~~~~~~~~Dvws~G~il~el~tg~~p~~~~ 633 (717)
+...... ....||+.|+|||++.+..++.++|||||||++|||++|+.||...
T Consensus 250 ~~~~~~~-----~~~~gt~~y~aPE~~~~~~~~~~~DiwSlG~il~elltG~~pf~~~ 302 (429)
T 3kvw_A 250 CYEHQRV-----YTYIQSRFYRAPEVILGARYGMPIDMWSLGCILAELLTGYPLLPGE 302 (429)
T ss_dssp EETTCCC-----CSSCSCGGGCCHHHHHTBCCCTHHHHHHHHHHHHHHHHSSCSSCCS
T ss_pred eecCCcc-----cccCCCCCccChHHHhCCCCCchHHHHhHHHHHHHHHhCCCCCCCC
Confidence 7654322 2346899999999999999999999999999999999999999764
No 219
>2fst_X Mitogen-activated protein kinase 14; active mutants, lipids, MAP kinase insertion, autophosphorylation, transferase; HET: BOG; 1.45A {Homo sapiens} PDB: 2fso_X* 2fsl_X* 2fsm_X* 2npq_A* 2bal_A* 2baj_A* 2bak_A* 2baq_A* 2qd9_A* 1ian_A* 2rg5_A* 2rg6_A* 3bv2_A* 3bv3_A* 3bx5_A* 3c5u_A* 3cg2_A* 3l8x_A* 3mvl_A* 3mvm_A* ...
Probab=100.00 E-value=4.1e-39 Score=340.80 Aligned_cols=263 Identities=22% Similarity=0.287 Sum_probs=183.7
Q ss_pred hccCCccccccccccEEEEEEEec-CCCeEEEEEechhh--HHHHHHHHHHHHHHHhcCCCceeeEeeeeecC------C
Q 005040 426 TDEFNECNLLGTGGFGSVYKGTLS-DGTNVAIKIFNLQL--ERAFRSFDSECEILRNVRHRNLLKILGSCSNL------D 496 (717)
Q Consensus 426 ~~~~~~~~~lg~G~~g~V~~~~~~-~~~~vavK~~~~~~--~~~~~~~~~e~~~l~~l~hpniv~~~~~~~~~------~ 496 (717)
.++|+..+.||+|+||.||+|... +|+.||||++.... ....+.+.+|+++++.++||||+++++++... .
T Consensus 28 ~~~y~~~~~lG~G~~g~V~~a~~~~~~~~vaiK~~~~~~~~~~~~~~~~~E~~~l~~l~hpnIv~~~~~~~~~~~~~~~~ 107 (367)
T 2fst_X 28 PERYQNLSPVGSGAYGSVCAAFDTKTGLRVAVKKLSRPFQSIIHAKRTYRELRLLKHMKHENVIGLLDVFTPARSLEEFN 107 (367)
T ss_dssp ETTEEEEEECC----CCEEEEEETTTTEEEEEEECSSTTSSHHHHHHHHHHHHHHHHCCCTTBCCCSEEECSCSSGGGCC
T ss_pred CCceEEeeEEeecCCeEEEEEEECCCCCEEEEEEeCccccCHHHHHHHHHHHHHHHhCCCCCCCcEEEEEecCCccccCC
Confidence 468999999999999999999864 78999999986432 33456788999999999999999999998654 5
Q ss_pred eeEEEEEccCCCCHHHHHhhCCCCCCHHHHHHHHHHHHHHHHHHhhcCCCCCeEecCCCCCCeeeCCCCcEEEeeecccc
Q 005040 497 FKALVLEFMPNGSLEKWLYSHNYFLDILQRLNIMIDVGSALEYLHHCHSSAPIIHCDLKPTNILLDENMVAHVSDFGISK 576 (717)
Q Consensus 497 ~~~lv~e~~~~g~L~~~l~~~~~~~~~~~~~~i~~~i~~~l~~LH~~~~~~~ivH~dlk~~Nill~~~~~~kl~Dfgl~~ 576 (717)
..|+|+|++ +++|.+++... .+++..+..++.|+++||.||| +.+|+||||||+||+++.++.+||+|||+++
T Consensus 108 ~~~lv~e~~-~~~L~~~~~~~--~l~~~~~~~i~~qi~~aL~~LH----~~givH~Dlkp~NIll~~~~~~kL~DFG~a~ 180 (367)
T 2fst_X 108 DVYLVTHLM-GADLNNIVKCQ--KLTDDHVQFLIYQILRGLKYIH----SADIIHRDLKPSNLAVNEDCELKILDFGLAR 180 (367)
T ss_dssp CCEEEEECC-CEECC-----C--CCCHHHHHHHHHHHHHHHHHHH----HTTCCCCCCCGGGEEECTTCCEEECC-----
T ss_pred eEEEEeccc-CCCHHHHHhcC--CCCHHHHHHHHHHHHHHHHHHH----HCCeeeCCCCHhhEEECCCCCEEEeeccccc
Confidence 679999999 68999998763 4899999999999999999999 6789999999999999999999999999998
Q ss_pred ccCCCCCceeeeccccCccccCCCccCC-CCcCcccchhhHHHHHHHHHhCCCCCCccccCcchHHHHHHhhCCCc---h
Q 005040 577 LLGEGEDSVIQTMTMATIGYMAPEYGSE-GIVSTKCDVYSYGVLLMETFTEKKPTDEMFTGEMSLRRWVKESLPHR---L 652 (717)
Q Consensus 577 ~~~~~~~~~~~~~~~~t~~y~aPE~~~~-~~~~~~~Dvws~G~il~el~tg~~p~~~~~~~~~~~~~~~~~~~~~~---~ 652 (717)
..... .....||+.|+|||++.+ ..++.++||||+||++|||++|+.||.+... ...+........... +
T Consensus 181 ~~~~~-----~~~~~~t~~y~aPE~~~~~~~~~~~~DiwslG~il~ell~g~~pf~~~~~-~~~l~~i~~~~g~p~~~~~ 254 (367)
T 2fst_X 181 HTADE-----MTGYVATRWYRAPEIMLNWMHYNQTVDIWSVGCIMAELLTGRTLFPGTDH-IDQLKLILRLVGTPGAELL 254 (367)
T ss_dssp ---------------CCCTTCCHHHHTTCCSCCTTHHHHHHHHHHHHHHHSSCSCCCSSH-HHHHHHHHHHHCSCCHHHH
T ss_pred ccccc-----CCCcCcCcCccChHHHcCCcCCCchhhHHHHHHHHHHHHhCCCCCCCCCH-HHHHHHHHHHhCCCCHHHH
Confidence 75432 234568999999998776 6799999999999999999999999976322 111111111111100 0
Q ss_pred hhhcccc-------chh-hhhhh-hhhHHHHHHHHHHHhhccCCCCCCCCCHHHHHHH
Q 005040 653 TEVVDAN-------LVR-EEQAF-SDKMDCLFSIMDLALDCCMDTPHKRIHMTDAAAK 701 (717)
Q Consensus 653 ~~~~~~~-------~~~-~~~~~-~~~~~~~~~l~~li~~cl~~~P~~Rpt~~ev~~~ 701 (717)
..+.... +.. ....+ .....++..+.+++.+||..||++|||+.|+++.
T Consensus 255 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dLl~~mL~~dP~~R~t~~e~L~h 312 (367)
T 2fst_X 255 KKISSESARNYIQSLTQMPKMNFANVFIGANPLAVDLLEKMLVLDSDKRITAAQALAH 312 (367)
T ss_dssp TTCCCHHHHHHHHTSCCCCCCCHHHHTTTCCHHHHHHHHHHSCSSGGGSCCHHHHHTS
T ss_pred HHhhhHHHHHHHhccCCCCCCCHHHHCCCCCHHHHHHHHHhCCCCcccCcCHHHHhcC
Confidence 0000000 000 00000 0011235678899999999999999999999863
No 220
>3pfq_A PKC-B, PKC-beta, protein kinase C beta type; phosphorylation, transferase; HET: TPO SEP ANP; 4.00A {Rattus norvegicus} PDB: 1tbn_A 1tbo_A 2e73_A
Probab=100.00 E-value=6.6e-39 Score=364.58 Aligned_cols=245 Identities=22% Similarity=0.251 Sum_probs=201.6
Q ss_pred HHhccCCccccccccccEEEEEEEec-CCCeEEEEEechhh---HHHHHHHHHHHHHHHhc-CCCceeeEeeeeecCCee
Q 005040 424 RATDEFNECNLLGTGGFGSVYKGTLS-DGTNVAIKIFNLQL---ERAFRSFDSECEILRNV-RHRNLLKILGSCSNLDFK 498 (717)
Q Consensus 424 ~~~~~~~~~~~lg~G~~g~V~~~~~~-~~~~vavK~~~~~~---~~~~~~~~~e~~~l~~l-~hpniv~~~~~~~~~~~~ 498 (717)
...++|++.+.||+|+||.||+|+.+ +++.||||++++.. ....+.+..|..++..+ +||+|+.+++++.+.+..
T Consensus 338 ~~~~~f~~~~~LG~G~fG~V~~~~~~~~~~~vAvK~l~~~~~~~~~~~~~~~~E~~~l~~~~~~~~i~~l~~~~~~~~~~ 417 (674)
T 3pfq_A 338 MKLTDFNFLMVLGKGSFGKVMLSERKGTDELYAVKILKKDVVIQDDDVECTMVEKRVLALPGKPPFLTQLHSCFQTMDRL 417 (674)
T ss_dssp --CTTEEEEEESSBTTTBCEEEEEESSSCCEEEEEEEEHHHHHHTTTTHHHHHHHHHHTCTTCCTTBCCEEEECBCSSEE
T ss_pred ccccceEEEEEEccCCCEEEEEEEECCCCcEEEEEEEeccccccHHHHHHHHHHHHHHHhccCCCeEEEEEEEEEeCCEE
Confidence 34578999999999999999999976 68899999998653 23345678899999988 799999999999999999
Q ss_pred EEEEEccCCCCHHHHHhhCCCCCCHHHHHHHHHHHHHHHHHHhhcCCCCCeEecCCCCCCeeeCCCCcEEEeeecccccc
Q 005040 499 ALVLEFMPNGSLEKWLYSHNYFLDILQRLNIMIDVGSALEYLHHCHSSAPIIHCDLKPTNILLDENMVAHVSDFGISKLL 578 (717)
Q Consensus 499 ~lv~e~~~~g~L~~~l~~~~~~~~~~~~~~i~~~i~~~l~~LH~~~~~~~ivH~dlk~~Nill~~~~~~kl~Dfgl~~~~ 578 (717)
|+||||+++|+|.++++..+ .+++..+..++.||+.||.||| +.+|+||||||+|||++.++++||+|||+++..
T Consensus 418 ~lV~E~~~gg~L~~~l~~~~-~~~~~~~~~~~~qi~~aL~~LH----~~gIiHrDLKp~NILl~~~g~ikL~DFGla~~~ 492 (674)
T 3pfq_A 418 YFVMEYVNGGDLMYHIQQVG-RFKEPHAVFYAAEIAIGLFFLQ----SKGIIYRDLKLDNVMLDSEGHIKIADFGMCKEN 492 (674)
T ss_dssp EEEEECCCSCBHHHHHHHHS-SCCHHHHHHHHHHHHHHHHHHH----HTSEECCCCCSTTEEECSSSCEEECCCTTCEEC
T ss_pred EEEEeCcCCCcHHHHHHhcC-CCCHHHHHHHHHHHHHHHHHHH----hCCeEeccCChhhEEEcCCCcEEEeecceeecc
Confidence 99999999999999998754 3899999999999999999999 678999999999999999999999999999864
Q ss_pred CCCCCceeeeccccCccccCCCccCCCCcCcccchhhHHHHHHHHHhCCCCCCccccCcchHHHHHHhhCCCchhhhccc
Q 005040 579 GEGEDSVIQTMTMATIGYMAPEYGSEGIVSTKCDVYSYGVLLMETFTEKKPTDEMFTGEMSLRRWVKESLPHRLTEVVDA 658 (717)
Q Consensus 579 ~~~~~~~~~~~~~~t~~y~aPE~~~~~~~~~~~Dvws~G~il~el~tg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 658 (717)
..... .....+||+.|+|||++.+..|+.++|||||||++|||++|+.||.+... ..+.+.+.. .
T Consensus 493 ~~~~~--~~~~~~GT~~Y~APE~l~~~~~~~~~DvwSlGvilyelltG~~Pf~~~~~--~~~~~~i~~-----------~ 557 (674)
T 3pfq_A 493 IWDGV--TTKTFCGTPDYIAPEIIAYQPYGKSVDWWAFGVLLYEMLAGQAPFEGEDE--DELFQSIME-----------H 557 (674)
T ss_dssp CCTTC--CBCCCCSCSSSCCHHHHTCCCBSTHHHHHHHHHHHHHHHHSSCSSCCSSH--HHHHHHHHS-----------S
T ss_pred ccCCc--ccccccCCCcccCHhhhcCCCCCccceEechHHHHHHHHcCCCCCCCCCH--HHHHHHHHh-----------C
Confidence 32222 23456799999999999999999999999999999999999999976321 111111111 0
Q ss_pred cchhhhhhhhhhHHHHHHHHHHHhhccCCCCCCCCCH
Q 005040 659 NLVREEQAFSDKMDCLFSIMDLALDCCMDTPHKRIHM 695 (717)
Q Consensus 659 ~~~~~~~~~~~~~~~~~~l~~li~~cl~~~P~~Rpt~ 695 (717)
.. .+ +..++.++.++|.+||+.||++||++
T Consensus 558 ~~-----~~--p~~~s~~~~~li~~lL~~dP~~R~~~ 587 (674)
T 3pfq_A 558 NV-----AY--PKSMSKEAVAICKGLMTKHPGKRLGC 587 (674)
T ss_dssp CC-----CC--CTTSCHHHHHHHHHHSCSSSTTCTTC
T ss_pred CC-----CC--CccCCHHHHHHHHHHccCCHHHCCCC
Confidence 00 00 11345668899999999999999997
No 221
>2wtk_C Serine/threonine-protein kinase 11; transferase-metal-binding protein complex, transferase metal protein complex, nucleus; HET: ANP; 2.65A {Homo sapiens}
Probab=100.00 E-value=1.6e-38 Score=328.79 Aligned_cols=251 Identities=23% Similarity=0.281 Sum_probs=199.9
Q ss_pred hccCCccccccccccEEEEEEEec-CCCeEEEEEechhh----HHHHHHHHHHHHHHHhcCCCceeeEeeee--ecCCee
Q 005040 426 TDEFNECNLLGTGGFGSVYKGTLS-DGTNVAIKIFNLQL----ERAFRSFDSECEILRNVRHRNLLKILGSC--SNLDFK 498 (717)
Q Consensus 426 ~~~~~~~~~lg~G~~g~V~~~~~~-~~~~vavK~~~~~~----~~~~~~~~~e~~~l~~l~hpniv~~~~~~--~~~~~~ 498 (717)
.++|++.+.||+|+||.||+|... +++.||+|++.... ....+.+.+|++++++++||||+++++++ .+....
T Consensus 4 ~~~y~i~~~lg~G~~g~V~~~~~~~~~~~~avK~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~~~~~~~ 83 (305)
T 2wtk_C 4 IGKYLMGDLLGEGSYGKVKEVLDSETLCRRAVKILKKKKLRRIPNGEANVKKEIQLLRRLRHKNVIQLVDVLYNEEKQKM 83 (305)
T ss_dssp -CCBCCCCEEEECSSCEEEEEEBTTTCCEEEEEEECHHHHHHSTTHHHHHHHHHHHHTTCCCTTBCCEEEEEECC---CE
T ss_pred ccceeEeeEEecCCCeEEEEEEECCCCcEEEEEEeccccccccchhHHHHHHHHHHHHhcCCCCeeEEEEEEEcCCCCeE
Confidence 478999999999999999999975 78999999997654 23456789999999999999999999998 445678
Q ss_pred EEEEEccCCCCHHHHHhhC-CCCCCHHHHHHHHHHHHHHHHHHhhcCCCCCeEecCCCCCCeeeCCCCcEEEeeeccccc
Q 005040 499 ALVLEFMPNGSLEKWLYSH-NYFLDILQRLNIMIDVGSALEYLHHCHSSAPIIHCDLKPTNILLDENMVAHVSDFGISKL 577 (717)
Q Consensus 499 ~lv~e~~~~g~L~~~l~~~-~~~~~~~~~~~i~~~i~~~l~~LH~~~~~~~ivH~dlk~~Nill~~~~~~kl~Dfgl~~~ 577 (717)
++||||++++ |.+++... ...+++..+..++.|++.||.||| +.+|+||||||+||+++.++.+||+|||++..
T Consensus 84 ~lv~e~~~~~-l~~~~~~~~~~~~~~~~~~~~~~qi~~al~~LH----~~~i~H~dlkp~NIl~~~~~~~kl~dfg~~~~ 158 (305)
T 2wtk_C 84 YMVMEYCVCG-MQEMLDSVPEKRFPVCQAHGYFCQLIDGLEYLH----SQGIVHKDIKPGNLLLTTGGTLKISALGVAEA 158 (305)
T ss_dssp EEEEECCSEE-HHHHHHHSTTCSCCHHHHHHHHHHHHHHHHHHH----HTTEECSCCSGGGEEECTTCCEEECCCTTCEE
T ss_pred EEEehhccCC-HHHHHHhCcccccCHHHHHHHHHHHHHHHHHHH----HCCeeecCCCcccEEEcCCCcEEeeccccccc
Confidence 9999999876 77777653 456899999999999999999999 67899999999999999999999999999987
Q ss_pred cCCCCCceeeeccccCccccCCCccCCCC--cCcccchhhHHHHHHHHHhCCCCCCccccCcchHHHHHHhhCCCchhhh
Q 005040 578 LGEGEDSVIQTMTMATIGYMAPEYGSEGI--VSTKCDVYSYGVLLMETFTEKKPTDEMFTGEMSLRRWVKESLPHRLTEV 655 (717)
Q Consensus 578 ~~~~~~~~~~~~~~~t~~y~aPE~~~~~~--~~~~~Dvws~G~il~el~tg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~ 655 (717)
..............||+.|+|||+..+.. ++.++||||+|+++|||++|+.||..... ......+.....
T Consensus 159 ~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~~~Di~slG~il~~l~~g~~p~~~~~~--~~~~~~i~~~~~------ 230 (305)
T 2wtk_C 159 LHPFAADDTCRTSQGSPAFQPPEIANGLDTFSGFKVDIWSAGVTLYNITTGLYPFEGDNI--YKLFENIGKGSY------ 230 (305)
T ss_dssp CCTTCSSCEECCCCSCGGGCCHHHHTCCSCEESHHHHHHHHHHHHHHHHHSSCSCCCSSH--HHHHHHHHHCCC------
T ss_pred cCccccccccccCCCCCCCcChhhccCcccCCcchhhHHHHHHHHHHHHhCCCCCCCchH--HHHHHHHhcCCC------
Confidence 75443333344557899999999877643 47899999999999999999999975321 111111111000
Q ss_pred ccccchhhhhhhhhhHHHHHHHHHHHhhccCCCCCCCCCHHHHHHH
Q 005040 656 VDANLVREEQAFSDKMDCLFSIMDLALDCCMDTPHKRIHMTDAAAK 701 (717)
Q Consensus 656 ~~~~~~~~~~~~~~~~~~~~~l~~li~~cl~~~P~~Rpt~~ev~~~ 701 (717)
.....++..+.+++.+||+.||++|||+.|+++.
T Consensus 231 ------------~~~~~~~~~l~~li~~~l~~dp~~Rps~~~ll~~ 264 (305)
T 2wtk_C 231 ------------AIPGDCGPPLSDLLKGMLEYEPAKRFSIRQIRQH 264 (305)
T ss_dssp ------------CCCSSSCHHHHHHHHHHTCSSTTTSCCHHHHHHS
T ss_pred ------------CCCCccCHHHHHHHHHHccCChhhCCCHHHHhcC
Confidence 0011344568899999999999999999999864
No 222
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=100.00 E-value=2e-38 Score=360.49 Aligned_cols=327 Identities=20% Similarity=0.259 Sum_probs=289.9
Q ss_pred CCccccCCCCCcEEECCCCcceec-----------------CCcCCC--CCCCCCEEEcccccccCccCCcccccccccc
Q 005040 4 IPNSITNATKLIGLDLGLNSFSGH-----------------IPNTFG--NLRHLSVLSLMMNNLTTESSSADQWSFLSSL 64 (717)
Q Consensus 4 iP~~~~~l~~L~~L~L~~n~i~~~-----------------~~~~~~--~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~l 64 (717)
||..|+++++|++|+|++|.+++. +|..++ ++++|++|+|++|++....+ ..|
T Consensus 198 ip~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~ip~~l~~~~l~~L~~L~L~~n~l~~~~p--------~~l 269 (636)
T 4eco_A 198 VSKAVMRLTKLRQFYMGNSPFVAENICEAWENENSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNLTKLP--------TFL 269 (636)
T ss_dssp ECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEECCTTCSSCC--------TTT
T ss_pred CCHHHhcccCCCEEECcCCccccccccccccccccchhcccCchhhhhcccCCCCEEEecCCcCCccCh--------HHH
Confidence 899999999999999999999986 899999 99999999999999887543 448
Q ss_pred cCccCCcEEeccCCC-Ccc-cCCcchhccc-----cccceeeecCCcceecCCc--cccCCCCCcEEEccCCCCcccCCc
Q 005040 65 TNCRNLANLALASNP-LGG-ILPPLIGNFS-----ASLQNIYAFECKLGGSIPK--EIGNLRGLIVLSLGFNDLNGTIPT 135 (717)
Q Consensus 65 ~~l~~L~~L~L~~N~-l~~-~~~~~~~~l~-----~~L~~L~l~~n~l~~~~~~--~~~~l~~L~~L~L~~n~l~~~~~~ 135 (717)
.++++|++|+|++|+ +++ .+|..+..+. ++|++|++++|+++ .+|. .++++++|++|+|++|.+++.+|
T Consensus 270 ~~l~~L~~L~Ls~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~l~-~ip~~~~l~~l~~L~~L~L~~N~l~g~ip- 347 (636)
T 4eco_A 270 KALPEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLK-TFPVETSLQKMKKLGMLECLYNQLEGKLP- 347 (636)
T ss_dssp TTCSSCCEEECTTCTTSCHHHHHHHHHHHHHSGGGGTCCEEECCSSCCS-SCCCHHHHTTCTTCCEEECCSCCCEEECC-
T ss_pred hcCCCCCEEECcCCCCCccccchHHHHhhhccccCCCCCEEECCCCcCC-ccCchhhhccCCCCCEEeCcCCcCccchh-
Confidence 999999999999998 998 7898888762 67999999999999 8888 89999999999999999998888
Q ss_pred cccccCCCCEEeccCCcccccCCccccCCCC-CCEEeccCCcCcccCCccccCCC--CCCeEEecCccccCCCChhhh--
Q 005040 136 SIGTLQQLQGFYVPENNLQGYVPHDLCHLER-LNILNLSGNKLSGAIPQCLASLT--SLRSLYLQSNKLSSSLPSSLW-- 210 (717)
Q Consensus 136 ~~~~l~~L~~L~l~~n~i~~~~~~~~~~l~~-L~~L~L~~n~l~~~~~~~~~~l~--~L~~L~L~~N~l~~~~~~~~~-- 210 (717)
.|..+++|++|+|++|+++ .+|..+.++++ |++|+|++|.++ .+|..+..++ +|+.|++++|++++..|..+.
T Consensus 348 ~~~~l~~L~~L~L~~N~l~-~lp~~l~~l~~~L~~L~Ls~N~l~-~lp~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~~ 425 (636)
T 4eco_A 348 AFGSEIKLASLNLAYNQIT-EIPANFCGFTEQVENLSFAHNKLK-YIPNIFDAKSVSVMSAIDFSYNEIGSVDGKNFDPL 425 (636)
T ss_dssp CCEEEEEESEEECCSSEEE-ECCTTSEEECTTCCEEECCSSCCS-SCCSCCCTTCSSCEEEEECCSSCTTTTTTCSSCTT
T ss_pred hhCCCCCCCEEECCCCccc-cccHhhhhhcccCcEEEccCCcCc-ccchhhhhcccCccCEEECcCCcCCCcchhhhccc
Confidence 9999999999999999999 67888999999 999999999999 6787777755 899999999999998898888
Q ss_pred -----cccCCCeEEccCCcCcccCCccccCCCCCCeEEccCCCCCCCCcccccCC-------cccccccccCccccCCCC
Q 005040 211 -----SLEYILRINLSSNSLKGTLPSNIQKLNVLIDLDLSRNQLSSDIPSTIGTL-------KNLETLSLAGNQFQGPIP 278 (717)
Q Consensus 211 -----~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l-------~~L~~L~l~~N~l~~~~~ 278 (717)
.+++|++|+|++|.+++..+..+..+++|+.|+|++|.++...+..+... ++|++|+|++|+++ .+|
T Consensus 426 ~~~~~~~~~L~~L~Ls~N~l~~lp~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~-~lp 504 (636)
T 4eco_A 426 DPTPFKGINVSSINLSNNQISKFPKELFSTGSPLSSINLMGNMLTEIPKNSLKDENENFKNTYLLTSIDLRFNKLT-KLS 504 (636)
T ss_dssp CSSCCCCCCEEEEECCSSCCCSCCTHHHHTTCCCSEEECCSSCCSBCCSSSSEETTEECTTGGGCCEEECCSSCCC-BCC
T ss_pred ccccccCCCCCEEECcCCccCcCCHHHHccCCCCCEEECCCCCCCCcCHHHhccccccccccCCccEEECcCCcCC-ccC
Confidence 88899999999999996555567789999999999999995444444433 39999999999999 678
Q ss_pred cccc--ccCccceEeccCCCCCCCCcccccccccccEEEc------cCCcccccccc-cccccccccccccCCcc
Q 005040 279 ESVG--NLISLESLDFSNNNLSGKIPKSLEALSHLKQFNV------SHNRLEGEIPV-KGSFKDFSAQSYFGNYA 344 (717)
Q Consensus 279 ~~~~--~l~~L~~L~L~~N~~~~~~~~~~~~l~~L~~L~l------~~N~l~~~~p~-~~~~~~~~~~~~~~n~~ 344 (717)
..+. .+++|+.|+|++|++++ +|..+..+++|+.|+| ++|++.+.+|. .+.++.+..+.+.+|.-
T Consensus 505 ~~~~~~~l~~L~~L~Ls~N~l~~-ip~~~~~l~~L~~L~Ls~N~~ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l 578 (636)
T 4eco_A 505 DDFRATTLPYLVGIDLSYNSFSK-FPTQPLNSSTLKGFGIRNQRDAQGNRTLREWPEGITLCPSLTQLQIGSNDI 578 (636)
T ss_dssp GGGSTTTCTTCCEEECCSSCCSS-CCCGGGGCSSCCEEECCSCBCTTCCBCCCCCCTTGGGCSSCCEEECCSSCC
T ss_pred hhhhhccCCCcCEEECCCCCCCC-cChhhhcCCCCCEEECCCCcccccCcccccChHHHhcCCCCCEEECCCCcC
Confidence 8876 99999999999999997 8999999999999999 56778888875 35567777777777764
No 223
>1phk_A Phosphorylase kinase; glycogen metabolism, transferase, serine/threonine-protein, ATP-binding, calmodulin-binding; HET: ATP; 2.20A {Oryctolagus cuniculus} SCOP: d.144.1.7 PDB: 1ql6_A* 2phk_A*
Probab=100.00 E-value=2.2e-38 Score=326.61 Aligned_cols=252 Identities=26% Similarity=0.316 Sum_probs=204.2
Q ss_pred HhccCCccccccccccEEEEEEEec-CCCeEEEEEechhh---------HHHHHHHHHHHHHHHhcC-CCceeeEeeeee
Q 005040 425 ATDEFNECNLLGTGGFGSVYKGTLS-DGTNVAIKIFNLQL---------ERAFRSFDSECEILRNVR-HRNLLKILGSCS 493 (717)
Q Consensus 425 ~~~~~~~~~~lg~G~~g~V~~~~~~-~~~~vavK~~~~~~---------~~~~~~~~~e~~~l~~l~-hpniv~~~~~~~ 493 (717)
..++|++.+.||+|+||.||+|... +++.||||++.... ....+.+.+|+++++++. ||||+++++++.
T Consensus 15 ~~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~~~~~~~e~~~l~~l~~h~~i~~~~~~~~ 94 (298)
T 1phk_A 15 FYENYEPKEILGRGVSSVVRRCIHKPTCKEYAVKIIDVTGGGSFSAEEVQELREATLKEVDILRKVSGHPNIIQLKDTYE 94 (298)
T ss_dssp CTTTEEEEEEEEECSSEEEEEEEETTTTEEEEEEEEETTCSTTCCHHHHHHHHHHHHHHHHHHHHHTTCTTBCCEEEEEE
T ss_pred hhhccceeeeecCCCceEEEEEEEcCcCceEEEEEEecccccccCHHHHHHHHHHHHHHHHHHHHhcCCCCEeeeeeeec
Confidence 3578999999999999999999976 78999999986432 234567889999999995 999999999999
Q ss_pred cCCeeEEEEEccCCCCHHHHHhhCCCCCCHHHHHHHHHHHHHHHHHHhhcCCCCCeEecCCCCCCeeeCCCCcEEEeeec
Q 005040 494 NLDFKALVLEFMPNGSLEKWLYSHNYFLDILQRLNIMIDVGSALEYLHHCHSSAPIIHCDLKPTNILLDENMVAHVSDFG 573 (717)
Q Consensus 494 ~~~~~~lv~e~~~~g~L~~~l~~~~~~~~~~~~~~i~~~i~~~l~~LH~~~~~~~ivH~dlk~~Nill~~~~~~kl~Dfg 573 (717)
+....++||||+++++|.+++.... .+++..+..++.|++.||.||| +.+++||||||+||+++.++.+||+|||
T Consensus 95 ~~~~~~lv~e~~~~~~L~~~l~~~~-~~~~~~~~~~~~qi~~~l~~lH----~~~i~H~dl~p~Nil~~~~~~~kl~dfg 169 (298)
T 1phk_A 95 TNTFFFLVFDLMKKGELFDYLTEKV-TLSEKETRKIMRALLEVICALH----KLNIVHRDLKPENILLDDDMNIKLTDFG 169 (298)
T ss_dssp CSSEEEEEEECCTTCBHHHHHHHHS-SCCHHHHHHHHHHHHHHHHHHH----HTTEECSCCSGGGEEECTTCCEEECCCT
T ss_pred cCCeEEEEEeccCCCcHHHHHhccC-CCCHHHHHHHHHHHHHHHHHHH----HCCcccCCCCcceEEEcCCCcEEEeccc
Confidence 9999999999999999999998653 4899999999999999999999 6789999999999999999999999999
Q ss_pred cccccCCCCCceeeeccccCccccCCCccC------CCCcCcccchhhHHHHHHHHHhCCCCCCccccCcchHHHHHHhh
Q 005040 574 ISKLLGEGEDSVIQTMTMATIGYMAPEYGS------EGIVSTKCDVYSYGVLLMETFTEKKPTDEMFTGEMSLRRWVKES 647 (717)
Q Consensus 574 l~~~~~~~~~~~~~~~~~~t~~y~aPE~~~------~~~~~~~~Dvws~G~il~el~tg~~p~~~~~~~~~~~~~~~~~~ 647 (717)
++........ .....+++.|+|||++. ...++.++||||||+++|||++|+.||..... ......+...
T Consensus 170 ~~~~~~~~~~---~~~~~~~~~y~aPE~~~~~~~~~~~~~~~~~Di~slG~~l~~l~~g~~p~~~~~~--~~~~~~~~~~ 244 (298)
T 1phk_A 170 FSCQLDPGEK---LREVCGTPSYLAPEIIECSMNDNHPGYGKEVDMWSTGVIMYTLLAGSPPFWHRKQ--MLMLRMIMSG 244 (298)
T ss_dssp TCEECCTTCC---BCCCCSCGGGCCHHHHHHHHCTTSCCBCTHHHHHHHHHHHHHHHHSSCSSCCSSH--HHHHHHHHHT
T ss_pred chhhcCCCcc---cccccCCccccCHHHhccccccccccCCcccccHhHHHHHHHHHHCCCCCcCccH--HHHHHHHhcC
Confidence 9987654322 23446899999999764 56689999999999999999999999965321 1111111111
Q ss_pred CCCchhhhccccchhhhhhhhhhHHHHHHHHHHHhhccCCCCCCCCCHHHHHH
Q 005040 648 LPHRLTEVVDANLVREEQAFSDKMDCLFSIMDLALDCCMDTPHKRIHMTDAAA 700 (717)
Q Consensus 648 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~cl~~~P~~Rpt~~ev~~ 700 (717)
.... . .+....++.++.+++.+||+.||++|||+.|+++
T Consensus 245 ~~~~---------~-----~~~~~~~~~~l~~li~~~l~~dp~~Rps~~~ll~ 283 (298)
T 1phk_A 245 NYQF---------G-----SPEWDDYSDTVKDLVSRFLVVQPQKRYTAEEALA 283 (298)
T ss_dssp CCCC---------C-----TTTGGGSCHHHHHHHHHHCCSSGGGSCCHHHHTT
T ss_pred Cccc---------C-----cccccccCHHHHHHHHHHccCCcccCCCHHHHHh
Confidence 0000 0 0111234567889999999999999999999975
No 224
>1x8b_A WEE1HU, WEE1-like protein kinase; cell cycle, transferase; HET: 824; 1.81A {Homo sapiens} PDB: 3bi6_A* 3biz_A* 3cqe_A* 3cr0_A* 2in6_A* 2io6_A* 2z2w_A*
Probab=100.00 E-value=2e-38 Score=325.22 Aligned_cols=244 Identities=20% Similarity=0.291 Sum_probs=198.0
Q ss_pred HhccCCccccccccccEEEEEEEec-CCCeEEEEEechhh--HHHHHHHHHHHHHHHhc-CCCceeeEeeeeecCCeeEE
Q 005040 425 ATDEFNECNLLGTGGFGSVYKGTLS-DGTNVAIKIFNLQL--ERAFRSFDSECEILRNV-RHRNLLKILGSCSNLDFKAL 500 (717)
Q Consensus 425 ~~~~~~~~~~lg~G~~g~V~~~~~~-~~~~vavK~~~~~~--~~~~~~~~~e~~~l~~l-~hpniv~~~~~~~~~~~~~l 500 (717)
..++|++.+.||+|+||.||+|... +++.||+|++.... ......+.+|+..+..+ +||||+++++++.+.+..++
T Consensus 9 ~~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~e~~~~~~l~~h~~iv~~~~~~~~~~~~~l 88 (289)
T 1x8b_A 9 YTTEFHELEKIGSGEFGSVFKCVKRLDGCIYAIKRSKKPLAGSVDEQNALREVYAHAVLGQHSHVVRYFSAWAEDDHMLI 88 (289)
T ss_dssp HHHHEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEECCCTTSHHHHHHHHHHHHHHHSCSCTTBCCEEEEEEETTEEEE
T ss_pred ccchhhhhhhhcCCCceEEEEEEEcCCCceEEEEEecccccccHHHHHHHHHHHHHHHhCCCCCeeeeeeeeecCCeEEE
Confidence 3578999999999999999999976 79999999987532 33456778899999999 99999999999999999999
Q ss_pred EEEccCCCCHHHHHhhC---CCCCCHHHHHHHHHHHHHHHHHHhhcCCCCCeEecCCCCCCeeeCCC-------------
Q 005040 501 VLEFMPNGSLEKWLYSH---NYFLDILQRLNIMIDVGSALEYLHHCHSSAPIIHCDLKPTNILLDEN------------- 564 (717)
Q Consensus 501 v~e~~~~g~L~~~l~~~---~~~~~~~~~~~i~~~i~~~l~~LH~~~~~~~ivH~dlk~~Nill~~~------------- 564 (717)
||||+++|+|.+++... ...+++..+..++.|++.||.||| +.+|+||||||+||+++.+
T Consensus 89 v~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~i~~qi~~al~~lH----~~~ivH~Dikp~NIl~~~~~~~~~~~~~~~~~ 164 (289)
T 1x8b_A 89 QNEYCNGGSLADAISENYRIMSYFKEAELKDLLLQVGRGLRYIH----SMSLVHMDIKPSNIFISRTSIPNAASEEGDED 164 (289)
T ss_dssp EEECCTTCBHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHH----HTTEECSCCSGGGEEEC---------------
T ss_pred EEEecCCCcHHHHHHhhcccccCCCHHHHHHHHHHHHHHHHHHH----hCCEeecCCCHHHEEEcCCCCCcccccccccc
Confidence 99999999999999854 245899999999999999999999 6789999999999999844
Q ss_pred ------CcEEEeeeccccccCCCCCceeeeccccCccccCCCccCCC-CcCcccchhhHHHHHHHHHhCCCCCCccccCc
Q 005040 565 ------MVAHVSDFGISKLLGEGEDSVIQTMTMATIGYMAPEYGSEG-IVSTKCDVYSYGVLLMETFTEKKPTDEMFTGE 637 (717)
Q Consensus 565 ------~~~kl~Dfgl~~~~~~~~~~~~~~~~~~t~~y~aPE~~~~~-~~~~~~Dvws~G~il~el~tg~~p~~~~~~~~ 637 (717)
..+||+|||.+....... ...||+.|+|||.+.+. .++.++||||||+++|||++|.+|+...
T Consensus 165 ~~~~~~~~~kl~Dfg~~~~~~~~~------~~~gt~~y~aPE~~~~~~~~~~~~Di~slG~il~~l~~~~~~~~~~---- 234 (289)
T 1x8b_A 165 DWASNKVMFKIGDLGHVTRISSPQ------VEEGDSRFLANEVLQENYTHLPKADIFALALTVVCAAGAEPLPRNG---- 234 (289)
T ss_dssp -----CCCEEECCCTTCEETTCSC------CCCCCGGGCCHHHHTTCCTTHHHHHHHHHHHHHHHHTTCCCCCSSS----
T ss_pred cccCCceEEEEcccccccccCCcc------ccCCCccccChhHhcCCCCCCchhhHHHHHHHHHHHhcCCCCCcch----
Confidence 479999999998765432 23589999999988765 6678999999999999999999876431
Q ss_pred chHHHHHHhhCCCchhhhccccchhhhhhhhhhHHHHHHHHHHHhhccCCCCCCCCCHHHHHH
Q 005040 638 MSLRRWVKESLPHRLTEVVDANLVREEQAFSDKMDCLFSIMDLALDCCMDTPHKRIHMTDAAA 700 (717)
Q Consensus 638 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~cl~~~P~~Rpt~~ev~~ 700 (717)
...........+ .+ +..++.++.+++.+||+.||++|||+.|+++
T Consensus 235 ~~~~~~~~~~~~---------~~---------~~~~~~~~~~li~~~l~~dp~~Rps~~~ll~ 279 (289)
T 1x8b_A 235 DQWHEIRQGRLP---------RI---------PQVLSQEFTELLKVMIHPDPERRPSAMALVK 279 (289)
T ss_dssp HHHHHHHTTCCC---------CC---------SSCCCHHHHHHHHHHTCSSGGGSCCHHHHHT
T ss_pred hHHHHHHcCCCC---------CC---------CcccCHHHHHHHHHHhCCCcccCCCHHHHhh
Confidence 111111111100 00 0123456889999999999999999999975
No 225
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=100.00 E-value=4.7e-38 Score=344.49 Aligned_cols=323 Identities=20% Similarity=0.233 Sum_probs=282.7
Q ss_pred CcEEECCCCcceecCCcCCCCCCCCCEEEcccccccCccCCcccccccccccCccCCcEEeccCCCCccc-CCcchhccc
Q 005040 14 LIGLDLGLNSFSGHIPNTFGNLRHLSVLSLMMNNLTTESSSADQWSFLSSLTNCRNLANLALASNPLGGI-LPPLIGNFS 92 (717)
Q Consensus 14 L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~l~~l~~L~~L~L~~N~l~~~-~~~~~~~l~ 92 (717)
-+.++.++++++ .+|. + .++|++|+|++|.|+.+.+.. |.++++|++|+|++|.+.+. .+..|..+
T Consensus 12 ~~~~~c~~~~l~-~lp~-l--~~~l~~L~Ls~n~i~~~~~~~--------~~~l~~L~~L~L~~n~~~~~i~~~~~~~l- 78 (455)
T 3v47_A 12 GYNAICINRGLH-QVPE-L--PAHVNYVDLSLNSIAELNETS--------FSRLQDLQFLKVEQQTPGLVIRNNTFRGL- 78 (455)
T ss_dssp TTEEECCSSCCS-SCCC-C--CTTCCEEECCSSCCCEECTTT--------TSSCTTCCEEECCCCSTTCEECTTTTTTC-
T ss_pred ccccCcCCCCcc-cCCC-C--CCccCEEEecCCccCcCChhH--------hccCccccEEECcCCcccceECccccccc-
Confidence 356899999998 4665 3 378999999999999886544 89999999999999999744 46677777
Q ss_pred cccceeeecCCcceecCCccccCCCCCcEEEccCCCCcccCCcc--ccccCCCCEEeccCCcccccCCcc-ccCCCCCCE
Q 005040 93 ASLQNIYAFECKLGGSIPKEIGNLRGLIVLSLGFNDLNGTIPTS--IGTLQQLQGFYVPENNLQGYVPHD-LCHLERLNI 169 (717)
Q Consensus 93 ~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~--~~~l~~L~~L~l~~n~i~~~~~~~-~~~l~~L~~ 169 (717)
++|++|+|++|++.+..|..|.++++|++|+|++|.+++..+.. |.++++|++|+|++|++++..|.. +.++++|++
T Consensus 79 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~ 158 (455)
T 3v47_A 79 SSLIILKLDYNQFLQLETGAFNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFLNMRRFHV 158 (455)
T ss_dssp TTCCEEECTTCTTCEECTTTTTTCTTCCEEECTTSCCBTHHHHSSTTTTCTTCCEEECCSSBCCSCCCCGGGGGCTTCCE
T ss_pred ccCCEEeCCCCccCccChhhccCcccCCEEeCCCCCCCccccCcccccCcccCCEEECCCCccCccCcccccCCCCcccE
Confidence 78999999999999999999999999999999999998755444 999999999999999999887776 899999999
Q ss_pred EeccCCcCcccCCccccCC----------------------------------CCCCeEEecCccccCCCChhhhcc---
Q 005040 170 LNLSGNKLSGAIPQCLASL----------------------------------TSLRSLYLQSNKLSSSLPSSLWSL--- 212 (717)
Q Consensus 170 L~L~~n~l~~~~~~~~~~l----------------------------------~~L~~L~L~~N~l~~~~~~~~~~l--- 212 (717)
|+|++|.+++..+..+..+ ++|++|++++|++++..|..+..+
T Consensus 159 L~L~~n~l~~~~~~~l~~l~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~ 238 (455)
T 3v47_A 159 LDLTFNKVKSICEEDLLNFQGKHFTLLRLSSITLQDMNEYWLGWEKCGNPFKNTSITTLDLSGNGFKESMAKRFFDAIAG 238 (455)
T ss_dssp EECTTCCBSCCCTTTSGGGTTCEEEEEECTTCBCTTCSTTCTTHHHHCCTTTTCEEEEEECTTSCCCHHHHHHHHHHTTT
T ss_pred EeCCCCcccccChhhhhccccccccccccccCcccccchhhccccccccccccceeeeEecCCCcccccchhhhhccccc
Confidence 9999999998877666544 678899999998876555444322
Q ss_pred ------------------------------------cCCCeEEccCCcCcccCCccccCCCCCCeEEccCCCCCCCCccc
Q 005040 213 ------------------------------------EYILRINLSSNSLKGTLPSNIQKLNVLIDLDLSRNQLSSDIPST 256 (717)
Q Consensus 213 ------------------------------------~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~ 256 (717)
++|+.|++++|.+++..|..+..+++|+.|+|++|.+++..|..
T Consensus 239 ~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~ 318 (455)
T 3v47_A 239 TKIQSLILSNSYNMGSSFGHTNFKDPDNFTFKGLEASGVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNEINKIDDNA 318 (455)
T ss_dssp CCEEEEECTTCTTTSCCTTCCSSCCCCTTTTGGGTTSCCCEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTT
T ss_pred cceeeEeeccccccccccchhhhccCcccccccccccCceEEEecCccccccchhhcccCCCCCEEECCCCcccccChhH
Confidence 58999999999999889999999999999999999999988889
Q ss_pred ccCCcccccccccCccccCCCCccccccCccceEeccCCCCCCCCcccccccccccEEEccCCccccccccc-ccccccc
Q 005040 257 IGTLKNLETLSLAGNQFQGPIPESVGNLISLESLDFSNNNLSGKIPKSLEALSHLKQFNVSHNRLEGEIPVK-GSFKDFS 335 (717)
Q Consensus 257 ~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~~~~~~~~~~l~~L~~L~l~~N~l~~~~p~~-~~~~~~~ 335 (717)
|..+++|++|+|++|.+++..+..+.++++|++|+|++|++++..|..|..+++|+.|+|++|++++..+.. ..++.+.
T Consensus 319 ~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~ 398 (455)
T 3v47_A 319 FWGLTHLLKLNLSQNFLGSIDSRMFENLDKLEVLDLSYNHIRALGDQSFLGLPNLKELALDTNQLKSVPDGIFDRLTSLQ 398 (455)
T ss_dssp TTTCTTCCEEECCSSCCCEECGGGGTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCC
T ss_pred hcCcccCCEEECCCCccCCcChhHhcCcccCCEEECCCCcccccChhhccccccccEEECCCCccccCCHhHhccCCccc
Confidence 999999999999999999888999999999999999999999888999999999999999999999866543 5677888
Q ss_pred cccccCCccccCCC
Q 005040 336 AQSYFGNYALCGPP 349 (717)
Q Consensus 336 ~~~~~~n~~~c~~~ 349 (717)
.+.+.+|+..|+.+
T Consensus 399 ~L~l~~N~l~~~~~ 412 (455)
T 3v47_A 399 KIWLHTNPWDCSCP 412 (455)
T ss_dssp EEECCSSCBCCCTT
T ss_pred EEEccCCCcccCCC
Confidence 88899999988766
No 226
>1vzo_A Ribosomal protein S6 kinase alpha 5; protein kinase, transferase, phosphorylation, serine/threonine protein kinase; 1.8A {Homo sapiens} SCOP: d.144.1.7
Probab=100.00 E-value=2.1e-39 Score=342.22 Aligned_cols=254 Identities=24% Similarity=0.276 Sum_probs=200.4
Q ss_pred hccCCccccccccccEEEEEEEe----cCCCeEEEEEechhh----HHHHHHHHHHHHHHHhc-CCCceeeEeeeeecCC
Q 005040 426 TDEFNECNLLGTGGFGSVYKGTL----SDGTNVAIKIFNLQL----ERAFRSFDSECEILRNV-RHRNLLKILGSCSNLD 496 (717)
Q Consensus 426 ~~~~~~~~~lg~G~~g~V~~~~~----~~~~~vavK~~~~~~----~~~~~~~~~e~~~l~~l-~hpniv~~~~~~~~~~ 496 (717)
.++|++.+.||+|+||.||+|+. .+++.||||+++... ....+.+.+|+++++++ +||||+++++++.+..
T Consensus 53 ~~~y~~~~~lG~G~~g~Vy~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~~E~~~l~~l~~h~~iv~~~~~~~~~~ 132 (355)
T 1vzo_A 53 IENFELLKVLGTGAYGKVFLVRKISGHDTGKLYAMKVLKKATIVQKAKTTEHTRTERQVLEHIRQSPFLVTLHYAFQTET 132 (355)
T ss_dssp GGGEEEEEEEEETTTEEEEEEEECSSTTTTCEEEEEEESEEEEEEEESSGGGCCCHHHHHHHHHTCTTBCCEEEEEEETT
T ss_pred ccceEEEEEeccCCCEEEEEEEEcccCCCCeEEEEEEEeHHHhhhhhhHHHHHHHHHHHHHHccCCCceeEEEEEEeeCc
Confidence 36899999999999999999987 378999999986432 12234567799999999 6999999999999999
Q ss_pred eeEEEEEccCCCCHHHHHhhCCCCCCHHHHHHHHHHHHHHHHHHhhcCCCCCeEecCCCCCCeeeCCCCcEEEeeecccc
Q 005040 497 FKALVLEFMPNGSLEKWLYSHNYFLDILQRLNIMIDVGSALEYLHHCHSSAPIIHCDLKPTNILLDENMVAHVSDFGISK 576 (717)
Q Consensus 497 ~~~lv~e~~~~g~L~~~l~~~~~~~~~~~~~~i~~~i~~~l~~LH~~~~~~~ivH~dlk~~Nill~~~~~~kl~Dfgl~~ 576 (717)
..++||||+++|+|.+++.... .+++..+..++.|++.||.||| +.+|+||||||+||+++.++.+||+|||+++
T Consensus 133 ~~~lv~e~~~~~~L~~~l~~~~-~~~~~~~~~~~~qi~~aL~~LH----~~~ivH~Dlkp~NIll~~~~~~kl~DfG~a~ 207 (355)
T 1vzo_A 133 KLHLILDYINGGELFTHLSQRE-RFTEHEVQIYVGEIVLALEHLH----KLGIIYRDIKLENILLDSNGHVVLTDFGLSK 207 (355)
T ss_dssp EEEEEECCCCSCBHHHHHHHHS-CCCHHHHHHHHHHHHHHHHHHH----HTTCCCCCCCGGGEEECTTSCEEESCSSEEE
T ss_pred eEEEEeecCCCCCHHHHHHHcC-CCCHHHHHHHHHHHHHHHHHHH----HCCcccCCCCHHHEEECCCCcEEEeeCCCCe
Confidence 9999999999999999998654 4899999999999999999999 6789999999999999999999999999998
Q ss_pred ccCCCCCceeeeccccCccccCCCccCC--CCcCcccchhhHHHHHHHHHhCCCCCCccccCcchHHHHHHhhCCCchhh
Q 005040 577 LLGEGEDSVIQTMTMATIGYMAPEYGSE--GIVSTKCDVYSYGVLLMETFTEKKPTDEMFTGEMSLRRWVKESLPHRLTE 654 (717)
Q Consensus 577 ~~~~~~~~~~~~~~~~t~~y~aPE~~~~--~~~~~~~Dvws~G~il~el~tg~~p~~~~~~~~~~~~~~~~~~~~~~~~~ 654 (717)
....... .......||+.|+|||++.+ ..++.++|||||||++|||++|+.||....... ............
T Consensus 208 ~~~~~~~-~~~~~~~gt~~y~aPE~~~~~~~~~~~~~DvwslG~il~ell~g~~pf~~~~~~~-~~~~~~~~~~~~---- 281 (355)
T 1vzo_A 208 EFVADET-ERAYDFCGTIEYMAPDIVRGGDSGHDKAVDWWSLGVLMYELLTGASPFTVDGEKN-SQAEISRRILKS---- 281 (355)
T ss_dssp ECCGGGG-GGGCGGGSCCTTCCHHHHTTCC---CTHHHHHHHHHHHHHHHHSSCTTSCTTSCC-CHHHHHHHHHHC----
T ss_pred ecccCCC-CcccCcccCcCccChhhhcCCCCCCCchhhHHHHHHHHHHHHHCCCCCccCCccc-hHHHHHHHHhcc----
Confidence 6543221 12234568999999998875 457899999999999999999999997532221 111111110000
Q ss_pred hccccchhhhhhhhhhHHHHHHHHHHHhhccCCCCCCCC-----CHHHHHHH
Q 005040 655 VVDANLVREEQAFSDKMDCLFSIMDLALDCCMDTPHKRI-----HMTDAAAK 701 (717)
Q Consensus 655 ~~~~~~~~~~~~~~~~~~~~~~l~~li~~cl~~~P~~Rp-----t~~ev~~~ 701 (717)
.+ ..+.+++..+.+++.+||..||++|| +++|+++.
T Consensus 282 --~~---------~~~~~~~~~~~~li~~~L~~dP~~R~~~~~~s~~ell~h 322 (355)
T 1vzo_A 282 --EP---------PYPQEMSALAKDLIQRLLMKDPKKRLGCGPRDADEIKEH 322 (355)
T ss_dssp --CC---------CCCTTSCHHHHHHHHHHTCSSGGGSTTSSTTTHHHHHTS
T ss_pred --CC---------CCCcccCHHHHHHHHHHhhhCHHHhcCCCCCCHHHHHcC
Confidence 00 01113345678999999999999999 89998764
No 227
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=100.00 E-value=1.5e-37 Score=353.32 Aligned_cols=330 Identities=21% Similarity=0.265 Sum_probs=229.5
Q ss_pred CCCCCccccCCCCCcEEECCCCcceecCCcCCCCCCCCCEEEcccccccCccCCcccccccccccCccCCcEEeccCCCC
Q 005040 1 MGTIPNSITNATKLIGLDLGLNSFSGHIPNTFGNLRHLSVLSLMMNNLTTESSSADQWSFLSSLTNCRNLANLALASNPL 80 (717)
Q Consensus 1 ~~~iP~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~l~~l~~L~~L~L~~N~l 80 (717)
+.+||..+.. ++++|+|++|.|+++.|..|.++++|++|+|++|+|+.+.+.+ |.++++|++|+|++|++
T Consensus 24 l~~iP~~l~~--~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~--------~~~l~~L~~L~Ls~n~l 93 (606)
T 3t6q_A 24 LNEIPGTLPN--STECLEFSFNVLPTIQNTTFSRLINLTFLDLTRCQIYWIHEDT--------FQSQHRLDTLVLTANPL 93 (606)
T ss_dssp CSSCCTTSCT--TCCEEECTTCCCSEECTTTSTTCTTCSEEECTTCCCCEECTTT--------TTTCTTCCEEECTTCCC
T ss_pred cccCcCCCCC--cCcEEEccCCccCcCChhHhccCccceEEECCCCccceeChhh--------ccCccccCeeeCCCCcc
Confidence 3578877765 6788888888888888888888888888888888888876544 78888888888888888
Q ss_pred cccCCcchhccccccceeeecCCcceecCCccccCCCCCcEEEccCCCCcccCCccccccCCCCEEeccCCcccccCCcc
Q 005040 81 GGILPPLIGNFSASLQNIYAFECKLGGSIPKEIGNLRGLIVLSLGFNDLNGTIPTSIGTLQQLQGFYVPENNLQGYVPHD 160 (717)
Q Consensus 81 ~~~~~~~~~~l~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~ 160 (717)
++..|..|..+ ++|++|++++|++.+..+..|.++++|++|+|++|.+++.....+..+++|++|++++|.+++..+..
T Consensus 94 ~~~~~~~~~~l-~~L~~L~L~~n~i~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~ 172 (606)
T 3t6q_A 94 IFMAETALSGP-KALKHLFFIQTGISSIDFIPLHNQKTLESLYLGSNHISSIKLPKGFPTEKLKVLDFQNNAIHYLSKED 172 (606)
T ss_dssp SEECTTTTSSC-TTCCEEECTTSCCSCGGGSCCTTCTTCCEEECCSSCCCCCCCCTTCCCTTCCEEECCSSCCCEECHHH
T ss_pred cccChhhhccc-ccccEeeccccCcccCCcchhccCCcccEEECCCCcccccCcccccCCcccCEEEcccCcccccChhh
Confidence 88878888777 67888888888888777777888888888888888888655455556888888888888888777777
Q ss_pred ccCCCCCC--EEeccCCcCcccCCccccCC--------------------------------------------------
Q 005040 161 LCHLERLN--ILNLSGNKLSGAIPQCLASL-------------------------------------------------- 188 (717)
Q Consensus 161 ~~~l~~L~--~L~L~~n~l~~~~~~~~~~l-------------------------------------------------- 188 (717)
|..+++|+ .|++++|.+++..+..|...
T Consensus 173 ~~~l~~L~~l~L~l~~n~l~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~l~~l~~~~~~~~~~~~i~~~~~~~l~ 252 (606)
T 3t6q_A 173 MSSLQQATNLSLNLNGNDIAGIEPGAFDSAVFQSLNFGGTQNLLVIFKGLKNSTIQSLWLGTFEDMDDEDISPAVFEGLC 252 (606)
T ss_dssp HHTTTTCCSEEEECTTCCCCEECTTTTTTCEEEEEECTTCSCHHHHHHHTTTCEEEEEECCCCTTSCCCCCCGGGGGGGG
T ss_pred hhhhcccceeEEecCCCccCccChhHhhhccccccccCCchhHHHHhhhccccchhheechhhccccccccChhHhchhh
Confidence 88888888 77888887776555443221
Q ss_pred -CCCCeEEecCccccCCCChhhhcccCCCeEEccCCcCcccCCccccCCCCCCeEEccCCCCCCCCcccccCCccccccc
Q 005040 189 -TSLRSLYLQSNKLSSSLPSSLWSLEYILRINLSSNSLKGTLPSNIQKLNVLIDLDLSRNQLSSDIPSTIGTLKNLETLS 267 (717)
Q Consensus 189 -~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~ 267 (717)
.+|+.|++++|.+++..+..|..+++|++|++++|.++ .+|..+..+++|++|++++|.+++..|..+..+++|++|+
T Consensus 253 ~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~-~lp~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~ 331 (606)
T 3t6q_A 253 EMSVESINLQKHYFFNISSNTFHCFSGLQELDLTATHLS-ELPSGLVGLSTLKKLVLSANKFENLCQISASNFPSLTHLS 331 (606)
T ss_dssp GSEEEEEECTTCCCSSCCTTTTTTCTTCSEEECTTSCCS-CCCSSCCSCTTCCEEECTTCCCSBGGGGCGGGCTTCSEEE
T ss_pred cCceeEEEeecCccCccCHHHhccccCCCEEeccCCccC-CCChhhcccccCCEEECccCCcCcCchhhhhccCcCCEEE
Confidence 04556666666666555555666666666666666666 4555666666666666666666655555666666666666
Q ss_pred ccCccccCCCCc-cccccCccceEeccCCCCCCCC--cccccccccccEEEccCCccccccccc-ccccccccccccCC
Q 005040 268 LAGNQFQGPIPE-SVGNLISLESLDFSNNNLSGKI--PKSLEALSHLKQFNVSHNRLEGEIPVK-GSFKDFSAQSYFGN 342 (717)
Q Consensus 268 l~~N~l~~~~~~-~~~~l~~L~~L~L~~N~~~~~~--~~~~~~l~~L~~L~l~~N~l~~~~p~~-~~~~~~~~~~~~~n 342 (717)
+++|.+.+.++. .+..+++|++|++++|++.+.. +..+..+++|+.|++++|++++..|.. ..++.+..+.+.+|
T Consensus 332 l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n 410 (606)
T 3t6q_A 332 IKGNTKRLELGTGCLENLENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFT 410 (606)
T ss_dssp CCSCSSCCBCCSSTTTTCTTCCEEECCSSCCCEEEESTTTTTTCTTCCEEECCSCSCEEECTTTTTTCTTCSEEECTTC
T ss_pred CCCCCcccccchhhhhccCcCCEEECCCCccccccCcchhcccCCCCCEEECCCCcCCcCCHHHhcCCccCCeEECCCC
Confidence 666666543332 3556666666666666665444 455566666666666666665544432 23344444444443
No 228
>3eb0_A Putative uncharacterized protein; kinase cryptosporidium parvum, ATP-binding, kinase, nucleoti binding; HET: PTR DRK; 2.65A {Cryptosporidium parvum iowa II}
Probab=100.00 E-value=7.7e-39 Score=341.88 Aligned_cols=271 Identities=21% Similarity=0.243 Sum_probs=200.0
Q ss_pred HHhccCCccccccccccEEEEEEEec-CCCeEEEEEechhhHHHHHHHHHHHHHHHhcCCCceeeEeeeeec--------
Q 005040 424 RATDEFNECNLLGTGGFGSVYKGTLS-DGTNVAIKIFNLQLERAFRSFDSECEILRNVRHRNLLKILGSCSN-------- 494 (717)
Q Consensus 424 ~~~~~~~~~~~lg~G~~g~V~~~~~~-~~~~vavK~~~~~~~~~~~~~~~e~~~l~~l~hpniv~~~~~~~~-------- 494 (717)
...++|++.+.||+|+||.||+|... +|+.||||++..... ...+|+++++.++||||+++++++..
T Consensus 4 ~~~~~y~~~~~lG~G~fg~V~~a~~~~~~~~vAiK~~~~~~~----~~~~E~~il~~l~hpnIv~l~~~~~~~~~~~~~~ 79 (383)
T 3eb0_A 4 TSSKKYSLGKTLGTGSFGIVCEVFDIESGKRFALKKVLQDPR----YKNRELDIMKVLDHVNIIKLVDYFYTTGDEEPKP 79 (383)
T ss_dssp --CTTEEEEEEEECC-CEEEEEEEETTTCCEEEEEEEECCTT----SCCHHHHHHTTCCCTTBCCEEEEEEEC-------
T ss_pred cccceEEEEEEEEeccCEEEEEEEECCCCCEEEEEEEecCcc----hHHHHHHHHHHcCCCCccchhheeeecCcccccc
Confidence 45678999999999999999999864 899999998864432 23469999999999999999999843
Q ss_pred ------------------------------CCeeEEEEEccCCCCHHHHHhh---CCCCCCHHHHHHHHHHHHHHHHHHh
Q 005040 495 ------------------------------LDFKALVLEFMPNGSLEKWLYS---HNYFLDILQRLNIMIDVGSALEYLH 541 (717)
Q Consensus 495 ------------------------------~~~~~lv~e~~~~g~L~~~l~~---~~~~~~~~~~~~i~~~i~~~l~~LH 541 (717)
....++||||++ |+|.+.+.. ....+++..+..++.|+++||+|||
T Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lv~e~~~-~~L~~~l~~~~~~~~~l~~~~~~~i~~qi~~aL~~LH 158 (383)
T 3eb0_A 80 PQPPDDHNKLGGKNNGVNNHHKSVIVNPSQNKYLNVIMEYVP-DTLHKVLKSFIRSGRSIPMNLISIYIYQLFRAVGFIH 158 (383)
T ss_dssp ------------------------------CCEEEEEECCCS-EEHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHHH
T ss_pred cccccccccccccccccccccccccccCCCceEEEEEEecCC-ccHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHH
Confidence 334789999997 588877763 3456999999999999999999999
Q ss_pred hcCCCCCeEecCCCCCCeeeC-CCCcEEEeeeccccccCCCCCceeeeccccCccccCCCccCCC-CcCcccchhhHHHH
Q 005040 542 HCHSSAPIIHCDLKPTNILLD-ENMVAHVSDFGISKLLGEGEDSVIQTMTMATIGYMAPEYGSEG-IVSTKCDVYSYGVL 619 (717)
Q Consensus 542 ~~~~~~~ivH~dlk~~Nill~-~~~~~kl~Dfgl~~~~~~~~~~~~~~~~~~t~~y~aPE~~~~~-~~~~~~Dvws~G~i 619 (717)
+.+|+||||||+||+++ .++.+||+|||+++....... .....+|+.|+|||.+.+. .++.++||||+||+
T Consensus 159 ----~~gi~H~Dikp~Nil~~~~~~~~kl~Dfg~a~~~~~~~~---~~~~~~t~~y~aPE~~~~~~~~~~~~DiwslG~i 231 (383)
T 3eb0_A 159 ----SLGICHRDIKPQNLLVNSKDNTLKLCDFGSAKKLIPSEP---SVAYICSRFYRAPELMLGATEYTPSIDLWSIGCV 231 (383)
T ss_dssp ----TTTEECSCCCGGGEEEETTTTEEEECCCTTCEECCTTSC---CCCCCCCSSCCCHHHHTTCSSCCTHHHHHHHHHH
T ss_pred ----HCcCccCccCHHHEEEcCCCCcEEEEECCCCcccCCCCC---CcCcccCCCccCHHHhcCCCCCCcchhhhhHHHH
Confidence 78999999999999998 689999999999987644332 2344679999999987764 58999999999999
Q ss_pred HHHHHhCCCCCCccccCcchHHHHHHhhCCCchhhhc--c--------ccchhhhhhhhhhHHHHHHHHHHHhhccCCCC
Q 005040 620 LMETFTEKKPTDEMFTGEMSLRRWVKESLPHRLTEVV--D--------ANLVREEQAFSDKMDCLFSIMDLALDCCMDTP 689 (717)
Q Consensus 620 l~el~tg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~--~--------~~~~~~~~~~~~~~~~~~~l~~li~~cl~~~P 689 (717)
+|||++|+.||.+... ...+...+..........+. + +......-.......++.++.+++.+||+.||
T Consensus 232 l~ell~g~~pf~~~~~-~~~~~~i~~~~g~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP 310 (383)
T 3eb0_A 232 FGELILGKPLFSGETS-IDQLVRIIQIMGTPTKEQMIRMNPHYTEVRFPTLKAKDWRKILPEGTPSLAIDLLEQILRYEP 310 (383)
T ss_dssp HHHHHHSSCSSCCSSH-HHHHHHHHHHHCCCCHHHHHHHCTTC--CCCCCCCCCCHHHHSCTTCCHHHHHHHHHHCCSSG
T ss_pred HHHHHhCCCCCCCCCh-HHHHHHHHHHhCCCCHHHHHHhCcccccccCCccCcccHHhhCCCCCCHHHHHHHHHHccCCh
Confidence 9999999999976322 12222222211111100000 0 00000000000112345678999999999999
Q ss_pred CCCCCHHHHHH--HHHHhHH
Q 005040 690 HKRIHMTDAAA--KLRKIKA 707 (717)
Q Consensus 690 ~~Rpt~~ev~~--~L~~~~~ 707 (717)
++|||+.|+++ .+++++.
T Consensus 311 ~~R~t~~e~l~hp~f~~~~~ 330 (383)
T 3eb0_A 311 DLRINPYEAMAHPFFDHLRN 330 (383)
T ss_dssp GGSCCHHHHHTSGGGHHHHH
T ss_pred hhCCCHHHHhcCHHHHHHHh
Confidence 99999999984 3444444
No 229
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=100.00 E-value=8.2e-38 Score=351.57 Aligned_cols=328 Identities=21% Similarity=0.229 Sum_probs=248.6
Q ss_pred CCCCCccccCCCCCcEEECCCCcceecCCcCCCCCCCCCEEEcccccccCccCCcccccccccccCccCCcEEeccCCCC
Q 005040 1 MGTIPNSITNATKLIGLDLGLNSFSGHIPNTFGNLRHLSVLSLMMNNLTTESSSADQWSFLSSLTNCRNLANLALASNPL 80 (717)
Q Consensus 1 ~~~iP~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~l~~l~~L~~L~L~~N~l 80 (717)
++.||..+. ++|++|+|++|.|+++.+..|.++++|++|+|++|+|+.+++.+ |.++++|++|+|++|++
T Consensus 43 L~~ip~~~~--~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~--------~~~l~~L~~L~Ls~N~l 112 (562)
T 3a79_B 43 LTHVPKDLP--PRTKALSLSQNSISELRMPDISFLSELRVLRLSHNRIRSLDFHV--------FLFNQDLEYLDVSHNRL 112 (562)
T ss_dssp CCSCCTTSC--TTCCEEECCSSCCCCCCGGGTTTCTTCCEEECCSCCCCEECTTT--------TTTCTTCCEEECTTSCC
T ss_pred CccCCCCCC--CCcCEEECCCCCccccChhhhccCCCccEEECCCCCCCcCCHHH--------hCCCCCCCEEECCCCcC
Confidence 457888775 78899999999999888888999999999999999999877544 88899999999999999
Q ss_pred cccCCcchhccccccceeeecCCcceec-CCccccCCCCCcEEEccCCCCcccCCccccccCCC--CEEeccCCcc--cc
Q 005040 81 GGILPPLIGNFSASLQNIYAFECKLGGS-IPKEIGNLRGLIVLSLGFNDLNGTIPTSIGTLQQL--QGFYVPENNL--QG 155 (717)
Q Consensus 81 ~~~~~~~~~~l~~~L~~L~l~~n~l~~~-~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L--~~L~l~~n~i--~~ 155 (717)
+. +|.. .+ ++|++|++++|++.+. .|..|+++++|++|+|++|.++.. .+..+++| ++|++++|.+ ++
T Consensus 113 ~~-lp~~--~l-~~L~~L~Ls~N~l~~l~~p~~~~~l~~L~~L~L~~n~l~~~---~~~~l~~L~L~~L~L~~n~l~~~~ 185 (562)
T 3a79_B 113 QN-ISCC--PM-ASLRHLDLSFNDFDVLPVCKEFGNLTKLTFLGLSAAKFRQL---DLLPVAHLHLSCILLDLVSYHIKG 185 (562)
T ss_dssp CE-ECSC--CC-TTCSEEECCSSCCSBCCCCGGGGGCTTCCEEEEECSBCCTT---TTGGGTTSCEEEEEEEESSCCCCS
T ss_pred Cc-cCcc--cc-ccCCEEECCCCCccccCchHhhcccCcccEEecCCCccccC---chhhhhhceeeEEEeecccccccc
Confidence 84 4444 44 6799999999998863 467899999999999999988753 45555555 8888888877 55
Q ss_pred cCCccccCCC----------------------------------------------------------------------
Q 005040 156 YVPHDLCHLE---------------------------------------------------------------------- 165 (717)
Q Consensus 156 ~~~~~~~~l~---------------------------------------------------------------------- 165 (717)
..|..+..+.
T Consensus 186 ~~~~~l~~l~~~~l~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~l~~~~~~l~~l~~L~~L~L~~~~l~~~~ 265 (562)
T 3a79_B 186 GETESLQIPNTTVLHLVFHPNSLFSVQVNMSVNALGHLQLSNIKLNDENCQRLMTFLSELTRGPTLLNVTLQHIETTWKC 265 (562)
T ss_dssp SSCCEEEECCEEEEEEEECSSSCCCCCCEEEESSEEEEEEEEEECCSTTHHHHHHHHHHHHSCSSCEEEEEEEEEECHHH
T ss_pred cCcccccccCcceEEEEecCccchhhhhhhcccccceEEEecccccccccchHHHHHHHHhccCcceEEEecCCcCcHHH
Confidence 5555554433
Q ss_pred -----------CCCEEeccCCcCcccCCccc-------------------------------------------------
Q 005040 166 -----------RLNILNLSGNKLSGAIPQCL------------------------------------------------- 185 (717)
Q Consensus 166 -----------~L~~L~L~~n~l~~~~~~~~------------------------------------------------- 185 (717)
+|++|++++|.+++.+|..+
T Consensus 266 ~~~~~~~~~~~~L~~L~l~~n~l~~~ip~~~~~~~~~~L~~L~~~~~~~~~~~~p~~~~~~~~~~~~L~~L~l~~n~~~~ 345 (562)
T 3a79_B 266 SVKLFQFFWPRPVEYLNIYNLTITERIDREEFTYSETALKSLMIEHVKNQVFLFSKEALYSVFAEMNIKMLSISDTPFIH 345 (562)
T ss_dssp HHHHHHHHTTSSEEEEEEEEEEECSCCCCCCCCCCSCSCCEEEEEEEEECCCSSCHHHHHHHHHTCCCSEEEEESSCCCC
T ss_pred HHHHHHhhhcccccEEEEeccEeeccccchhhhcccccchheehhhcccceeecChhhhhhhhccCcceEEEccCCCccc
Confidence 56666666666665555433
Q ss_pred ----cCCCCCCeEEecCccccCCCChhhhcccCCCeEEccCCcCccc--CCccccCCCCCCeEEccCCCCCCCCc-cccc
Q 005040 186 ----ASLTSLRSLYLQSNKLSSSLPSSLWSLEYILRINLSSNSLKGT--LPSNIQKLNVLIDLDLSRNQLSSDIP-STIG 258 (717)
Q Consensus 186 ----~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~--~~~~~~~l~~L~~L~l~~N~l~~~~~-~~~~ 258 (717)
..+++|++|++++|++++..|..+..+++|+.|++++|++++. .|..+..+++|+.|++++|.+++.+| ..+.
T Consensus 346 ~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~ 425 (562)
T 3a79_B 346 MVCPPSPSSFTFLNFTQNVFTDSVFQGCSTLKRLQTLILQRNGLKNFFKVALMTKNMSSLETLDVSLNSLNSHAYDRTCA 425 (562)
T ss_dssp CCCCSSCCCCCEEECCSSCCCTTTTTTCCSCSSCCEEECCSSCCCBTTHHHHTTTTCTTCCEEECTTSCCBSCCSSCCCC
T ss_pred ccCccCCCCceEEECCCCccccchhhhhcccCCCCEEECCCCCcCCcccchhhhcCCCCCCEEECCCCcCCCccChhhhc
Confidence 5667888888888888877777888888888888888888853 24567888888888888888887343 4577
Q ss_pred CCcccccccccCccccCCCCccccccCccceEeccCCCCCCCCcccccccccccEEEccCCcccccccc-cccccccccc
Q 005040 259 TLKNLETLSLAGNQFQGPIPESVGNLISLESLDFSNNNLSGKIPKSLEALSHLKQFNVSHNRLEGEIPV-KGSFKDFSAQ 337 (717)
Q Consensus 259 ~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~~~~~~~~~~l~~L~~L~l~~N~l~~~~p~-~~~~~~~~~~ 337 (717)
.+++|++|++++|++++..|..+. ++|+.|+|++|+++ .+|..+..+++|+.|+|++|++++..+. ...++.+..+
T Consensus 426 ~l~~L~~L~l~~n~l~~~~~~~l~--~~L~~L~L~~N~l~-~ip~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L 502 (562)
T 3a79_B 426 WAESILVLNLSSNMLTGSVFRCLP--PKVKVLDLHNNRIM-SIPKDVTHLQALQELNVASNQLKSVPDGVFDRLTSLQYI 502 (562)
T ss_dssp CCTTCCEEECCSSCCCGGGGSSCC--TTCSEEECCSSCCC-CCCTTTTSSCCCSEEECCSSCCCCCCTTSTTTCTTCCCE
T ss_pred CcccCCEEECCCCCCCcchhhhhc--CcCCEEECCCCcCc-ccChhhcCCCCCCEEECCCCCCCCCCHHHHhcCCCCCEE
Confidence 788888888888888766665544 67888888888887 5666666888888888888888854443 4556667777
Q ss_pred cccCCccccCC
Q 005040 338 SYFGNYALCGP 348 (717)
Q Consensus 338 ~~~~n~~~c~~ 348 (717)
.+.+|++.|+.
T Consensus 503 ~l~~N~~~c~c 513 (562)
T 3a79_B 503 WLHDNPWDCTC 513 (562)
T ss_dssp ECCSCCBCCCH
T ss_pred EecCCCcCCCc
Confidence 77888877753
No 230
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=100.00 E-value=5.1e-38 Score=350.23 Aligned_cols=327 Identities=20% Similarity=0.237 Sum_probs=213.5
Q ss_pred CCCCCccccCCCCCcEEECCCCcceecCCcCCCCCCCCCEEEcccccccCccCCcccccccccccCccCCcEEeccCCCC
Q 005040 1 MGTIPNSITNATKLIGLDLGLNSFSGHIPNTFGNLRHLSVLSLMMNNLTTESSSADQWSFLSSLTNCRNLANLALASNPL 80 (717)
Q Consensus 1 ~~~iP~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~l~~l~~L~~L~L~~N~l 80 (717)
+++||..+. ++|++|+|++|.|++..|..|.++++|++|+|++|+|+.+.+. .|.++++|++|+|++|++
T Consensus 12 l~~ip~~~~--~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~--------~~~~l~~L~~L~Ls~N~l 81 (520)
T 2z7x_B 12 LIHVPKDLS--QKTTILNISQNYISELWTSDILSLSKLRILIISHNRIQYLDIS--------VFKFNQELEYLDLSHNKL 81 (520)
T ss_dssp CSSCCCSCC--TTCSEEECCSSCCCCCCHHHHTTCTTCCEEECCSSCCCEEEGG--------GGTTCTTCCEEECCSSCC
T ss_pred ccccccccc--ccccEEECCCCcccccChhhccccccccEEecCCCccCCcChH--------HhhcccCCCEEecCCCce
Confidence 457888776 8888999999998877778888889999999999988887543 378888888899988888
Q ss_pred cccCCcchhccccccceeeecCCccee-cCCccccCCCCCcEEEccCCCCcccCCccccccCCC--CEEeccCCcc--cc
Q 005040 81 GGILPPLIGNFSASLQNIYAFECKLGG-SIPKEIGNLRGLIVLSLGFNDLNGTIPTSIGTLQQL--QGFYVPENNL--QG 155 (717)
Q Consensus 81 ~~~~~~~~~~l~~~L~~L~l~~n~l~~-~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L--~~L~l~~n~i--~~ 155 (717)
+. +|.. .+ ++|++|++++|++.+ .+|..|+++++|++|+|++|.+++ ..+..+++| ++|++++|.+ .+
T Consensus 82 ~~-lp~~--~l-~~L~~L~L~~N~l~~~~~p~~~~~l~~L~~L~L~~n~l~~---~~~~~l~~L~L~~L~l~~n~l~~~~ 154 (520)
T 2z7x_B 82 VK-ISCH--PT-VNLKHLDLSFNAFDALPICKEFGNMSQLKFLGLSTTHLEK---SSVLPIAHLNISKVLLVLGETYGEK 154 (520)
T ss_dssp CE-EECC--CC-CCCSEEECCSSCCSSCCCCGGGGGCTTCCEEEEEESSCCG---GGGGGGTTSCEEEEEEEECTTTTSS
T ss_pred ee-cCcc--cc-CCccEEeccCCccccccchhhhccCCcceEEEecCcccch---hhccccccceeeEEEeecccccccc
Confidence 84 4443 34 678888888888886 467888888888888888888874 345566666 7777776666 44
Q ss_pred cCCccccCCC----------------------------------------------------------------------
Q 005040 156 YVPHDLCHLE---------------------------------------------------------------------- 165 (717)
Q Consensus 156 ~~~~~~~~l~---------------------------------------------------------------------- 165 (717)
..|..+..+.
T Consensus 155 ~~~~~l~~l~~~~l~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~~ 234 (520)
T 2z7x_B 155 EDPEGLQDFNTESLHIVFPTNKEFHFILDVSVKTVANLELSNIKCVLEDNKCSYFLSILAKLQTNPKLSNLTLNNIETTW 234 (520)
T ss_dssp CCTTTTTTCCEEEEEEECCSSSCCCCCCCCCCTTCSEEEECCEEECCSTTTTHHHHHHHHGGGGCTTCCEEEEEEEEEEH
T ss_pred cccccccccccceEEEEeccCcchhhhhhhhhhcccceeeccccccccccccceeecchhhhccccchhhccccccccCH
Confidence 4444443322
Q ss_pred -------------CCCEEeccCCcCcccCCccc-----------------------------------------------
Q 005040 166 -------------RLNILNLSGNKLSGAIPQCL----------------------------------------------- 185 (717)
Q Consensus 166 -------------~L~~L~L~~n~l~~~~~~~~----------------------------------------------- 185 (717)
+|++|++++|++++.+|..+
T Consensus 235 ~~~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~~~l~~L~~l~l~~n~~~~p~~~~~~~~~~~~L~~L~l~~n~l 314 (520)
T 2z7x_B 235 NSFIRILQLVWHTTVWYFSISNVKLQGQLDFRDFDYSGTSLKALSIHQVVSDVFGFPQSYIYEIFSNMNIKNFTVSGTRM 314 (520)
T ss_dssp HHHHHHHHHHHTSSCSEEEEEEEEEESCCCCCCCCCCSCCCCEEEEEEEEECCCCSCTHHHHHHHHTCCCSEEEEESSCC
T ss_pred HHHHHHHHHhhhCcccEEEeecccccCccccchhhcccccCceeEeccccccceecchhhhhcccccCceeEEEcCCCcc
Confidence 45555555555554444433
Q ss_pred ------cCCCCCCeEEecCccccCCCChhhhcccCCCeEEccCCcCcc--cCCccccCCCCCCeEEccCCCCCCCCcc-c
Q 005040 186 ------ASLTSLRSLYLQSNKLSSSLPSSLWSLEYILRINLSSNSLKG--TLPSNIQKLNVLIDLDLSRNQLSSDIPS-T 256 (717)
Q Consensus 186 ------~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~--~~~~~~~~l~~L~~L~l~~N~l~~~~~~-~ 256 (717)
..+++|++|++++|++++..|..+..+++|++|++++|++++ .+|..+..+++|+.|++++|.+++.+|. .
T Consensus 315 ~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~l~~L~~L~Ls~N~l~~~l~~~~ 394 (520)
T 2z7x_B 315 VHMLCPSKISPFLHLDFSNNLLTDTVFENCGHLTELETLILQMNQLKELSKIAEMTTQMKSLQQLDISQNSVSYDEKKGD 394 (520)
T ss_dssp CCCCCCSSCCCCCEEECCSSCCCTTTTTTCCCCSSCCEEECCSSCCCBHHHHHHHHTTCTTCCEEECCSSCCBCCGGGCS
T ss_pred ccccchhhCCcccEEEeECCccChhhhhhhccCCCCCEEEccCCccCccccchHHHhhCCCCCEEECCCCcCCcccccch
Confidence 345556666666666665555556666666666666666654 3334556666666666666666652333 3
Q ss_pred ccCCcccccccccCccccCCCCccccccCccceEeccCCCCCCCCcccccccccccEEEccCCcccccccc-cccccccc
Q 005040 257 IGTLKNLETLSLAGNQFQGPIPESVGNLISLESLDFSNNNLSGKIPKSLEALSHLKQFNVSHNRLEGEIPV-KGSFKDFS 335 (717)
Q Consensus 257 ~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~~~~~~~~~~l~~L~~L~l~~N~l~~~~p~-~~~~~~~~ 335 (717)
+..+++|++|++++|++++..|..+. ++|+.|+|++|+++ .+|..+..+++|+.|++++|++++..+. ...++.+.
T Consensus 395 ~~~l~~L~~L~Ls~N~l~~~~~~~l~--~~L~~L~Ls~N~l~-~ip~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~ 471 (520)
T 2z7x_B 395 CSWTKSLLSLNMSSNILTDTIFRCLP--PRIKVLDLHSNKIK-SIPKQVVKLEALQELNVASNQLKSVPDGIFDRLTSLQ 471 (520)
T ss_dssp CCCCTTCCEEECCSSCCCGGGGGSCC--TTCCEEECCSSCCC-CCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCC
T ss_pred hccCccCCEEECcCCCCCcchhhhhc--ccCCEEECCCCccc-ccchhhhcCCCCCEEECCCCcCCccCHHHhccCCccc
Confidence 55566666666666666555444443 46666666666666 5555555666666666666666643222 33445555
Q ss_pred cccccCCccccC
Q 005040 336 AQSYFGNYALCG 347 (717)
Q Consensus 336 ~~~~~~n~~~c~ 347 (717)
.+.+.+|++.|+
T Consensus 472 ~L~l~~N~~~c~ 483 (520)
T 2z7x_B 472 KIWLHTNPWDCS 483 (520)
T ss_dssp EEECCSSCBCCC
T ss_pred EEECcCCCCccc
Confidence 555666666554
No 231
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=100.00 E-value=1.6e-37 Score=353.16 Aligned_cols=329 Identities=19% Similarity=0.208 Sum_probs=262.9
Q ss_pred CccccCCCCCcEEECCCCcceecCCcCCCCCCCCCEEEcccccccCccCCcccccccccccCccCCcEEeccCCCCcccC
Q 005040 5 PNSITNATKLIGLDLGLNSFSGHIPNTFGNLRHLSVLSLMMNNLTTESSSADQWSFLSSLTNCRNLANLALASNPLGGIL 84 (717)
Q Consensus 5 P~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~l~~l~~L~~L~L~~N~l~~~~ 84 (717)
|..|.++++|++|+|++|.|+++.|.+|.++++|++|+|++|+++.+.+.. |.++++|++|+|++|++++..
T Consensus 50 ~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~--------~~~l~~L~~L~L~~n~i~~l~ 121 (606)
T 3t6q_A 50 NTTFSRLINLTFLDLTRCQIYWIHEDTFQSQHRLDTLVLTANPLIFMAETA--------LSGPKALKHLFFIQTGISSID 121 (606)
T ss_dssp TTTSTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCSEECTTT--------TSSCTTCCEEECTTSCCSCGG
T ss_pred hhHhccCccceEEECCCCccceeChhhccCccccCeeeCCCCcccccChhh--------hcccccccEeeccccCcccCC
Confidence 678999999999999999999999999999999999999999999876544 889999999999999999877
Q ss_pred CcchhccccccceeeecCCcceecCCccccCCCCCcEEEccCCCCcccCCccccccCCCC--EEeccCCcccccCCcccc
Q 005040 85 PPLIGNFSASLQNIYAFECKLGGSIPKEIGNLRGLIVLSLGFNDLNGTIPTSIGTLQQLQ--GFYVPENNLQGYVPHDLC 162 (717)
Q Consensus 85 ~~~~~~l~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~--~L~l~~n~i~~~~~~~~~ 162 (717)
+..+..+ ++|++|++++|++.+.....+..+++|++|+|++|.+++..+..|..+++|+ .|++++|.+.+..+..+.
T Consensus 122 ~~~~~~l-~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~l~L~l~~n~l~~~~~~~~~ 200 (606)
T 3t6q_A 122 FIPLHNQ-KTLESLYLGSNHISSIKLPKGFPTEKLKVLDFQNNAIHYLSKEDMSSLQQATNLSLNLNGNDIAGIEPGAFD 200 (606)
T ss_dssp GSCCTTC-TTCCEEECCSSCCCCCCCCTTCCCTTCCEEECCSSCCCEECHHHHHTTTTCCSEEEECTTCCCCEECTTTTT
T ss_pred cchhccC-CcccEEECCCCcccccCcccccCCcccCEEEcccCcccccChhhhhhhcccceeEEecCCCccCccChhHhh
Confidence 7778777 6799999999999876555666699999999999999988888899999998 889999988877665543
Q ss_pred CC---------------------------------------------------CCCCEEeccCCcCcccCCccccCCCCC
Q 005040 163 HL---------------------------------------------------ERLNILNLSGNKLSGAIPQCLASLTSL 191 (717)
Q Consensus 163 ~l---------------------------------------------------~~L~~L~L~~n~l~~~~~~~~~~l~~L 191 (717)
.. .+|+.|++++|.+++..+..|+.+++|
T Consensus 201 ~~~L~~L~l~~~~~~~~~~~~l~~~~l~~l~~~~~~~~~~~~i~~~~~~~l~~~~L~~L~l~~n~l~~~~~~~~~~l~~L 280 (606)
T 3t6q_A 201 SAVFQSLNFGGTQNLLVIFKGLKNSTIQSLWLGTFEDMDDEDISPAVFEGLCEMSVESINLQKHYFFNISSNTFHCFSGL 280 (606)
T ss_dssp TCEEEEEECTTCSCHHHHHHHTTTCEEEEEECCCCTTSCCCCCCGGGGGGGGGSEEEEEECTTCCCSSCCTTTTTTCTTC
T ss_pred hccccccccCCchhHHHHhhhccccchhheechhhccccccccChhHhchhhcCceeEEEeecCccCccCHHHhccccCC
Confidence 21 156777778888877767778888888
Q ss_pred CeEEecCccccCCCChhhhcccCCCeEEccCCcCcccCCccccCCCCCCeEEccCCCCCCCCcc-cccCCcccccccccC
Q 005040 192 RSLYLQSNKLSSSLPSSLWSLEYILRINLSSNSLKGTLPSNIQKLNVLIDLDLSRNQLSSDIPS-TIGTLKNLETLSLAG 270 (717)
Q Consensus 192 ~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~-~~~~l~~L~~L~l~~ 270 (717)
++|++++|+++ .+|..+..+++|++|++++|.+++..|..+..+++|+.|++++|.+.+.++. .+..+++|++|++++
T Consensus 281 ~~L~l~~n~l~-~lp~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~ 359 (606)
T 3t6q_A 281 QELDLTATHLS-ELPSGLVGLSTLKKLVLSANKFENLCQISASNFPSLTHLSIKGNTKRLELGTGCLENLENLRELDLSH 359 (606)
T ss_dssp SEEECTTSCCS-CCCSSCCSCTTCCEEECTTCCCSBGGGGCGGGCTTCSEEECCSCSSCCBCCSSTTTTCTTCCEEECCS
T ss_pred CEEeccCCccC-CCChhhcccccCCEEECccCCcCcCchhhhhccCcCCEEECCCCCcccccchhhhhccCcCCEEECCC
Confidence 88888888887 5677777888888888888888877777788888888888888877754443 477788888888888
Q ss_pred ccccCCC--CccccccCccceEeccCCCCCCCCcccccccccccEEEccCCcccccccc--cccccccccccccCCc
Q 005040 271 NQFQGPI--PESVGNLISLESLDFSNNNLSGKIPKSLEALSHLKQFNVSHNRLEGEIPV--KGSFKDFSAQSYFGNY 343 (717)
Q Consensus 271 N~l~~~~--~~~~~~l~~L~~L~L~~N~~~~~~~~~~~~l~~L~~L~l~~N~l~~~~p~--~~~~~~~~~~~~~~n~ 343 (717)
|.+.+.. +..+..+++|++|+|++|++.+..|..+..+++|+.|++++|++++..|. ...++.+..+.+.+|.
T Consensus 360 n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~ 436 (606)
T 3t6q_A 360 DDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFTRLKVKDAQSPFQNLHLLKVLNLSHSL 436 (606)
T ss_dssp SCCCEEEESTTTTTTCTTCCEEECCSCSCEEECTTTTTTCTTCSEEECTTCCEECCTTCCTTTTCTTCCEEECTTCC
T ss_pred CccccccCcchhcccCCCCCEEECCCCcCCcCCHHHhcCCccCCeEECCCCcCCCcccchhhhCcccCCEEECCCCc
Confidence 8877655 66777788888888888888777777777888888888888887766543 2445555555555543
No 232
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=100.00 E-value=1.4e-37 Score=353.47 Aligned_cols=159 Identities=25% Similarity=0.266 Sum_probs=90.3
Q ss_pred cccCCCCCCeEEecCccccCCCChhhhcccCCCeEEccCCcCcccCC-ccccCCCCCCeEEccCCCCCCCCcccccCCcc
Q 005040 184 CLASLTSLRSLYLQSNKLSSSLPSSLWSLEYILRINLSSNSLKGTLP-SNIQKLNVLIDLDLSRNQLSSDIPSTIGTLKN 262 (717)
Q Consensus 184 ~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~-~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~ 262 (717)
.+..+++|++|+|++|.+++ +|..+..+++|+.|++++|.+.+..+ ..+..+++|+.|++++|.+++..|..+..+++
T Consensus 371 ~~~~~~~L~~L~L~~n~l~~-~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~ 449 (606)
T 3vq2_A 371 SDLGTNSLRHLDLSFNGAII-MSANFMGLEELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYTNTKIDFDGIFLGLTS 449 (606)
T ss_dssp HHHCCSCCCEEECCSCSEEE-ECCCCTTCTTCCEEECTTSEEESTTTTTTTTTCTTCCEEECTTSCCEECCTTTTTTCTT
T ss_pred hhccCCcccEeECCCCcccc-chhhccCCCCCCeeECCCCccCCccChhhhhccccCCEEECcCCCCCccchhhhcCCCC
Confidence 33444444444444444442 23445555555555555555554444 45556666666666666666555566666666
Q ss_pred cccccccCccccC-CCCccccccCccceEeccCCCCCCCCcccccccccccEEEccCCccccccccc-cccccccccccc
Q 005040 263 LETLSLAGNQFQG-PIPESVGNLISLESLDFSNNNLSGKIPKSLEALSHLKQFNVSHNRLEGEIPVK-GSFKDFSAQSYF 340 (717)
Q Consensus 263 L~~L~l~~N~l~~-~~~~~~~~l~~L~~L~L~~N~~~~~~~~~~~~l~~L~~L~l~~N~l~~~~p~~-~~~~~~~~~~~~ 340 (717)
|++|++++|++.+ ..|..+..+++|+.|+|++|++++..|..+..+++|+.|+|++|++++..|.. ..++.+..+.+.
T Consensus 450 L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~ 529 (606)
T 3vq2_A 450 LNTLKMAGNSFKDNTLSNVFANTTNLTFLDLSKCQLEQISWGVFDTLHRLQLLNMSHNNLLFLDSSHYNQLYSLSTLDCS 529 (606)
T ss_dssp CCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCEEGGGTTTCTTCCEEECT
T ss_pred CCEEECCCCcCCCcchHHhhccCCCCCEEECCCCcCCccChhhhcccccCCEEECCCCcCCCcCHHHccCCCcCCEEECC
Confidence 6666666666665 24556666666666666666666666666666666666666666666654432 334445555554
Q ss_pred CCc
Q 005040 341 GNY 343 (717)
Q Consensus 341 ~n~ 343 (717)
+|.
T Consensus 530 ~N~ 532 (606)
T 3vq2_A 530 FNR 532 (606)
T ss_dssp TSC
T ss_pred CCc
Confidence 443
No 233
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=100.00 E-value=1.3e-37 Score=343.10 Aligned_cols=325 Identities=18% Similarity=0.158 Sum_probs=296.5
Q ss_pred CCcEEECCCCcceecCCcCCCCCCCCCEEEcccccccCccCCcccccccccccCccCCcEEeccCCCCcccCCcchhccc
Q 005040 13 KLIGLDLGLNSFSGHIPNTFGNLRHLSVLSLMMNNLTTESSSADQWSFLSSLTNCRNLANLALASNPLGGILPPLIGNFS 92 (717)
Q Consensus 13 ~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~l~ 92 (717)
.-+.++.++++++ .+|..+. ++|++|+|++|+|+.+++.. |.++++|++|+|++|.+++..|..|..+
T Consensus 12 ~~~~v~c~~~~l~-~ip~~~~--~~l~~L~L~~n~l~~~~~~~--------~~~l~~L~~L~L~~n~i~~~~~~~~~~l- 79 (477)
T 2id5_A 12 QDRAVLCHRKRFV-AVPEGIP--TETRLLDLGKNRIKTLNQDE--------FASFPHLEELELNENIVSAVEPGAFNNL- 79 (477)
T ss_dssp TTTEEECCSCCCS-SCCSCCC--TTCSEEECCSSCCCEECTTT--------TTTCTTCCEEECTTSCCCEECTTTTTTC-
T ss_pred CCCEEEeCCCCcC-cCCCCCC--CCCcEEECCCCccceECHhH--------ccCCCCCCEEECCCCccCEeChhhhhCC-
Confidence 3467999999998 5676664 58999999999999987544 8999999999999999999989999998
Q ss_pred cccceeeecCCcceecCCccccCCCCCcEEEccCCCCcccCCccccccCCCCEEeccCCcccccCCccccCCCCCCEEec
Q 005040 93 ASLQNIYAFECKLGGSIPKEIGNLRGLIVLSLGFNDLNGTIPTSIGTLQQLQGFYVPENNLQGYVPHDLCHLERLNILNL 172 (717)
Q Consensus 93 ~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L 172 (717)
++|++|+|++|++....+..|.++++|++|+|++|.++...+..|.++++|++|+|++|.+....+..|.++++|++|+|
T Consensus 80 ~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l 159 (477)
T 2id5_A 80 FNLRTLGLRSNRLKLIPLGVFTGLSNLTKLDISENKIVILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTL 159 (477)
T ss_dssp TTCCEEECCSSCCCSCCTTSSTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEEECCTTCCEECTTSSTTCTTCCEEEE
T ss_pred ccCCEEECCCCcCCccCcccccCCCCCCEEECCCCccccCChhHccccccCCEEECCCCccceeChhhccCCCCCCEEEC
Confidence 68999999999999877778999999999999999999988999999999999999999999999999999999999999
Q ss_pred cCCcCcccCCccccCCCCCCeEEecCccccCCCChhhhcccCCCeEEccCCcCcccCCccccCCCCCCeEEccCCCCCCC
Q 005040 173 SGNKLSGAIPQCLASLTSLRSLYLQSNKLSSSLPSSLWSLEYILRINLSSNSLKGTLPSNIQKLNVLIDLDLSRNQLSSD 252 (717)
Q Consensus 173 ~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~ 252 (717)
++|++++..+..|..+++|+.|+|++|.+.+..+..|..+++|+.|++++|.+.+.++..+....+|+.|+|++|.+++.
T Consensus 160 ~~n~l~~~~~~~l~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~ 239 (477)
T 2id5_A 160 EKCNLTSIPTEALSHLHGLIVLRLRHLNINAIRDYSFKRLYRLKVLEISHWPYLDTMTPNCLYGLNLTSLSITHCNLTAV 239 (477)
T ss_dssp ESCCCSSCCHHHHTTCTTCCEEEEESCCCCEECTTCSCSCTTCCEEEEECCTTCCEECTTTTTTCCCSEEEEESSCCCSC
T ss_pred CCCcCcccChhHhcccCCCcEEeCCCCcCcEeChhhcccCcccceeeCCCCccccccCcccccCccccEEECcCCccccc
Confidence 99999987777899999999999999999988888999999999999999998877777777777999999999999976
Q ss_pred CcccccCCcccccccccCccccCCCCccccccCccceEeccCCCCCCCCcccccccccccEEEccCCccccccccc-ccc
Q 005040 253 IPSTIGTLKNLETLSLAGNQFQGPIPESVGNLISLESLDFSNNNLSGKIPKSLEALSHLKQFNVSHNRLEGEIPVK-GSF 331 (717)
Q Consensus 253 ~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~~~~~~~~~~l~~L~~L~l~~N~l~~~~p~~-~~~ 331 (717)
.+..+..+++|+.|+|++|++++..+..|.++++|+.|+|++|++.+..|..|..+++|+.|+|++|.+++..+.. ..+
T Consensus 240 ~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l 319 (477)
T 2id5_A 240 PYLAVRHLVYLRFLNLSYNPISTIEGSMLHELLRLQEIQLVGGQLAVVEPYAFRGLNYLRVLNVSGNQLTTLEESVFHSV 319 (477)
T ss_dssp CHHHHTTCTTCCEEECCSSCCCEECTTSCTTCTTCCEEECCSSCCSEECTTTBTTCTTCCEEECCSSCCSCCCGGGBSCG
T ss_pred CHHHhcCccccCeeECCCCcCCccChhhccccccCCEEECCCCccceECHHHhcCcccCCEEECCCCcCceeCHhHcCCC
Confidence 6678999999999999999999888889999999999999999999999999999999999999999999866643 556
Q ss_pred cccccccccCCccccCCC
Q 005040 332 KDFSAQSYFGNYALCGPP 349 (717)
Q Consensus 332 ~~~~~~~~~~n~~~c~~~ 349 (717)
+.+..+.+.+|++.|+..
T Consensus 320 ~~L~~L~l~~N~l~c~c~ 337 (477)
T 2id5_A 320 GNLETLILDSNPLACDCR 337 (477)
T ss_dssp GGCCEEECCSSCEECSGG
T ss_pred cccCEEEccCCCccCccc
Confidence 778888899999998754
No 234
>1wak_A Serine/threonine-protein kinase SPRK1; SRPK, transferase, alternative splicing, ATP-binding, chromosome partition, differentiation, mRNA processing; 1.73A {Homo sapiens} PDB: 1wbp_A* 3beg_A* 2x7g_A*
Probab=100.00 E-value=1.2e-38 Score=342.65 Aligned_cols=264 Identities=22% Similarity=0.253 Sum_probs=201.1
Q ss_pred hccCCccccccccccEEEEEEEec-CCCeEEEEEechhhHHHHHHHHHHHHHHHhcC--------CCceeeEeeeee---
Q 005040 426 TDEFNECNLLGTGGFGSVYKGTLS-DGTNVAIKIFNLQLERAFRSFDSECEILRNVR--------HRNLLKILGSCS--- 493 (717)
Q Consensus 426 ~~~~~~~~~lg~G~~g~V~~~~~~-~~~~vavK~~~~~~~~~~~~~~~e~~~l~~l~--------hpniv~~~~~~~--- 493 (717)
.++|++.+.||+|+||.||+|+.. +++.||||++... ....+.+.+|+++++.++ ||||+++++++.
T Consensus 36 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~-~~~~~~~~~E~~~l~~l~~~~~~~~~~~~iv~~~~~~~~~~ 114 (397)
T 1wak_A 36 NGRYHVIRKLGWGHFSTVWLSWDIQGKKFVAMKVVKSA-EHYTETALDEIRLLKSVRNSDPNDPNREMVVQLLDDFKISG 114 (397)
T ss_dssp TTTEEEEEEEEECSSEEEEEEEETTTTEEEEEEEECSC-HHHHHHHHHHHHHHHHHHHSCTTCGGGGGBCCEEEEEEEEE
T ss_pred CCeEEEEEEeeecCCeeEEEEEecCCCeEEEEEEEecC-CcchHHHHHHHHHHHHHhhcCCCCCCcceeeeeecceeecC
Confidence 368999999999999999999865 7889999999754 334467888999999995 788999999987
Q ss_pred -cCCeeEEEEEccCCCCHHHHHhhC-CCCCCHHHHHHHHHHHHHHHHHHhhcCCCC-CeEecCCCCCCeeeCCCC-----
Q 005040 494 -NLDFKALVLEFMPNGSLEKWLYSH-NYFLDILQRLNIMIDVGSALEYLHHCHSSA-PIIHCDLKPTNILLDENM----- 565 (717)
Q Consensus 494 -~~~~~~lv~e~~~~g~L~~~l~~~-~~~~~~~~~~~i~~~i~~~l~~LH~~~~~~-~ivH~dlk~~Nill~~~~----- 565 (717)
+....++||||+ ++++.+++... ...+++..+..++.|++.||.||| ++ +|+||||||+|||++.++
T Consensus 115 ~~~~~~~lv~e~~-~~~l~~~~~~~~~~~~~~~~~~~i~~qi~~aL~~lH----~~~givHrDikp~NIll~~~~~~~~~ 189 (397)
T 1wak_A 115 VNGTHICMVFEVL-GHHLLKWIIKSNYQGLPLPCVKKIIQQVLQGLDYLH----TKCRIIHTDIKPENILLSVNEQYIRR 189 (397)
T ss_dssp TTEEEEEEEECCC-CCBHHHHHHHTTTSCCCHHHHHHHHHHHHHHHHHHH----HTTCEECCCCSGGGEEECCCHHHHHH
T ss_pred CCCceEEEEEecc-CccHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHH----HhCCEecCCCCHHHeeEeccchhhhh
Confidence 566889999999 56777666644 356899999999999999999999 56 899999999999999775
Q ss_pred --------------------------------------------cEEEeeeccccccCCCCCceeeeccccCccccCCCc
Q 005040 566 --------------------------------------------VAHVSDFGISKLLGEGEDSVIQTMTMATIGYMAPEY 601 (717)
Q Consensus 566 --------------------------------------------~~kl~Dfgl~~~~~~~~~~~~~~~~~~t~~y~aPE~ 601 (717)
.+||+|||++...... .....||+.|+|||+
T Consensus 190 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kl~DfG~a~~~~~~-----~~~~~gt~~y~aPE~ 264 (397)
T 1wak_A 190 LAAEATEWQRSGAPPPSGSAVSTAPATAGNFLVNPLEPKNAEKLKVKIADLGNACWVHKH-----FTEDIQTRQYRSLEV 264 (397)
T ss_dssp HHHHHC---------------------CCTTSCCTTSGGGGGGCCEEECCGGGCEETTBC-----SCSCCSCGGGCCHHH
T ss_pred hhhhhHHHhhcCCCCCCCCccccCCcccccccccccccccccccceEecccccccccccc-----CccCCCCCcccCChh
Confidence 7999999999876432 233468999999999
Q ss_pred cCCCCcCcccchhhHHHHHHHHHhCCCCCCccccCcch-----HHHHHHhhC--CCch-------hhhccc---------
Q 005040 602 GSEGIVSTKCDVYSYGVLLMETFTEKKPTDEMFTGEMS-----LRRWVKESL--PHRL-------TEVVDA--------- 658 (717)
Q Consensus 602 ~~~~~~~~~~Dvws~G~il~el~tg~~p~~~~~~~~~~-----~~~~~~~~~--~~~~-------~~~~~~--------- 658 (717)
+.+..++.++|||||||++|||++|+.||......... ......... +... .+.+..
T Consensus 265 ~~~~~~~~~~DiwslG~il~elltg~~pf~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~ 344 (397)
T 1wak_A 265 LIGSGYNTPADIWSTACMAFELATGDYLFEPHSGEEYTRDEDHIALIIELLGKVPRKLIVAGKYSKEFFTKKGDLKHITK 344 (397)
T ss_dssp HHTSCCCTHHHHHHHHHHHHHHHHSSCSCCCCCCSSSCHHHHHHHHHHHHHCSCCHHHHHHCTTGGGTBCTTSSBSSCCC
T ss_pred hcCCCCCcHHHHHHHHHHHHHHhhCCCCCCCCcccccCchHHHHHHHHHhcCCCChHHhhcccccccccCCccccccccc
Confidence 99989999999999999999999999999764332211 111111000 0000 000000
Q ss_pred ----cc-hhhhhhhhhhHHHHHHHHHHHhhccCCCCCCCCCHHHHHH
Q 005040 659 ----NL-VREEQAFSDKMDCLFSIMDLALDCCMDTPHKRIHMTDAAA 700 (717)
Q Consensus 659 ----~~-~~~~~~~~~~~~~~~~l~~li~~cl~~~P~~Rpt~~ev~~ 700 (717)
.+ .............+..+.+++.+||+.||++|||++|+++
T Consensus 345 ~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~Rpt~~e~l~ 391 (397)
T 1wak_A 345 LKPWGLFEVLVEKYEWSQEEAAGFTDFLLPMLELIPEKRATAAECLR 391 (397)
T ss_dssp CCCCCHHHHHHHTSCCCHHHHHHHHHHHGGGGCSSGGGSCCHHHHHT
T ss_pred cCCcchhHhhhhhcccchhhHHHHHHHHHHHhccChhhcCCHHHHhh
Confidence 00 0000011123456678999999999999999999999985
No 235
>2x7f_A TRAF2 and NCK-interacting protein kinase; serine/threonine-protein kinase, phosphoprotein; HET: 824; 2.80A {Homo sapiens}
Probab=100.00 E-value=2.5e-39 Score=338.28 Aligned_cols=255 Identities=24% Similarity=0.329 Sum_probs=197.0
Q ss_pred HHHHHhccCCccccccccccEEEEEEEec-CCCeEEEEEechhhHHHHHHHHHHHHHHHhc-CCCceeeEeeeeec----
Q 005040 421 DIRRATDEFNECNLLGTGGFGSVYKGTLS-DGTNVAIKIFNLQLERAFRSFDSECEILRNV-RHRNLLKILGSCSN---- 494 (717)
Q Consensus 421 ~~~~~~~~~~~~~~lg~G~~g~V~~~~~~-~~~~vavK~~~~~~~~~~~~~~~e~~~l~~l-~hpniv~~~~~~~~---- 494 (717)
++....++|++.+.||+|+||.||+|.+. +++.||||++..... ..+.+.+|+.+++++ +||||+++++++..
T Consensus 18 ~l~~~~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~vaiK~~~~~~~-~~~~~~~e~~~l~~l~~h~~i~~~~~~~~~~~~~ 96 (326)
T 2x7f_A 18 ALRDPAGIFELVELVGNGTYGQVYKGRHVKTGQLAAIKVMDVTGD-EEEEIKQEINMLKKYSHHRNIATYYGAFIKKNPP 96 (326)
T ss_dssp CCCCCTTTEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEECCSS-TTHHHHHHHHHHHHHCCSTTBCCEEEEEEECC--
T ss_pred hccCCCCcEEEEEEeccCCCEEEEEEEECCCCCeEEEEEEecCcc-cHHHHHHHHHHHHhccCCCCeeeeeeEEeeccCc
Confidence 33445688999999999999999999974 789999999865432 235688899999999 79999999999876
Q ss_pred --CCeeEEEEEccCCCCHHHHHhhC-CCCCCHHHHHHHHHHHHHHHHHHhhcCCCCCeEecCCCCCCeeeCCCCcEEEee
Q 005040 495 --LDFKALVLEFMPNGSLEKWLYSH-NYFLDILQRLNIMIDVGSALEYLHHCHSSAPIIHCDLKPTNILLDENMVAHVSD 571 (717)
Q Consensus 495 --~~~~~lv~e~~~~g~L~~~l~~~-~~~~~~~~~~~i~~~i~~~l~~LH~~~~~~~ivH~dlk~~Nill~~~~~~kl~D 571 (717)
.+..++||||+++|+|.+++... ...+++..+..++.|++.||.||| +.+|+||||||+||+++.++.+||+|
T Consensus 97 ~~~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~i~~qi~~~l~~lH----~~~ivH~dlkp~NIl~~~~~~~kl~D 172 (326)
T 2x7f_A 97 GMDDQLWLVMEFCGAGSVTDLIKNTKGNTLKEEWIAYICREILRGLSHLH----QHKVIHRDIKGQNVLLTENAEVKLVD 172 (326)
T ss_dssp CCCCEEEEEEECCTTEEHHHHHHHSGGGCCCHHHHHHHHHHHHHHHHHHH----HTTCCCCCCSGGGEEECTTCCEEECC
T ss_pred cccceEEEEEEcCCCCcHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHH----HCCccccCCcHHHEEEcCCCCEEEee
Confidence 46789999999999999999864 345899999999999999999999 67899999999999999999999999
Q ss_pred eccccccCCCCCceeeeccccCccccCCCccC-----CCCcCcccchhhHHHHHHHHHhCCCCCCccccCcchHHHHHHh
Q 005040 572 FGISKLLGEGEDSVIQTMTMATIGYMAPEYGS-----EGIVSTKCDVYSYGVLLMETFTEKKPTDEMFTGEMSLRRWVKE 646 (717)
Q Consensus 572 fgl~~~~~~~~~~~~~~~~~~t~~y~aPE~~~-----~~~~~~~~Dvws~G~il~el~tg~~p~~~~~~~~~~~~~~~~~ 646 (717)
||++........ ......||+.|+|||++. +..++.++||||||+++|||++|+.||...... .....+..
T Consensus 173 fg~~~~~~~~~~--~~~~~~~~~~y~aPE~~~~~~~~~~~~~~~~Di~slG~il~~l~~g~~p~~~~~~~--~~~~~~~~ 248 (326)
T 2x7f_A 173 FGVSAQLDRTVG--RRNTFIGTPYWMAPEVIACDENPDATYDFKSDLWSLGITAIEMAEGAPPLCDMHPM--RALFLIPR 248 (326)
T ss_dssp CTTTC---------------CCGGGCCHHHHC--------CCTTHHHHHHHHHHHHHHHSSCTTTTSCHH--HHHHHHHH
T ss_pred CcCceecCcCcc--ccccccCCccccChhhhccccccCcCCCccchHHHHHHHHHHHHhCCCCCCCCcHH--HHHHHhhc
Confidence 999987643221 123446899999999876 567899999999999999999999999653221 11111111
Q ss_pred hCCCchhhhccccchhhhhhhhhhHHHHHHHHHHHhhccCCCCCCCCCHHHHHH
Q 005040 647 SLPHRLTEVVDANLVREEQAFSDKMDCLFSIMDLALDCCMDTPHKRIHMTDAAA 700 (717)
Q Consensus 647 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~cl~~~P~~Rpt~~ev~~ 700 (717)
..... . ....++..+.+++.+||+.||++|||+.|+++
T Consensus 249 ~~~~~--------~--------~~~~~~~~l~~li~~~l~~dp~~Rps~~~ll~ 286 (326)
T 2x7f_A 249 NPAPR--------L--------KSKKWSKKFQSFIESCLVKNHSQRPATEQLMK 286 (326)
T ss_dssp SCCCC--------C--------SCSCSCHHHHHHHHHHCCSSGGGSCCHHHHHT
T ss_pred Ccccc--------C--------CccccCHHHHHHHHHHhccChhhCCCHHHHhh
Confidence 10000 0 01123456889999999999999999999987
No 236
>2j0j_A Focal adhesion kinase 1; cell migration, FERM, transferase, integrin signaling; HET: 4ST; 2.80A {Gallus gallus} PDB: 2j0k_A*
Probab=100.00 E-value=1.7e-38 Score=360.05 Aligned_cols=259 Identities=22% Similarity=0.359 Sum_probs=207.8
Q ss_pred HhccCCccccccccccEEEEEEEec----CCCeEEEEEechhh-HHHHHHHHHHHHHHHhcCCCceeeEeeeeecCCeeE
Q 005040 425 ATDEFNECNLLGTGGFGSVYKGTLS----DGTNVAIKIFNLQL-ERAFRSFDSECEILRNVRHRNLLKILGSCSNLDFKA 499 (717)
Q Consensus 425 ~~~~~~~~~~lg~G~~g~V~~~~~~----~~~~vavK~~~~~~-~~~~~~~~~e~~~l~~l~hpniv~~~~~~~~~~~~~ 499 (717)
..++|++.+.||+|+||.||+|.+. .+..||+|++.... ....+.+.+|+.++++++||||+++++++.+ +..+
T Consensus 388 ~~~~y~i~~~LG~G~fG~Vy~a~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~E~~~l~~l~HpnIv~l~~~~~~-~~~~ 466 (656)
T 2j0j_A 388 QRERIELGRCIGEGQFGDVHQGIYMSPENPAMAVAIKTCKNCTSDSVREKFLQEALTMRQFDHPHIVKLIGVITE-NPVW 466 (656)
T ss_dssp CGGGEEEEEEEECCSSCCEEEEEECCSSSCCEEEEEEECSSTTCHHHHHHHHHHHHHHHHCCCTTBCCEEEEECS-SSCE
T ss_pred ccccEEEeeEEeeCCCEEEEEEEEecCCCccEEEEEEEecccCCHHHHHHHHHHHHHHHhCCCCCCCeEEEEEec-CceE
Confidence 3578889999999999999999874 24579999987543 3445678999999999999999999999854 5689
Q ss_pred EEEEccCCCCHHHHHhhCCCCCCHHHHHHHHHHHHHHHHHHhhcCCCCCeEecCCCCCCeeeCCCCcEEEeeeccccccC
Q 005040 500 LVLEFMPNGSLEKWLYSHNYFLDILQRLNIMIDVGSALEYLHHCHSSAPIIHCDLKPTNILLDENMVAHVSDFGISKLLG 579 (717)
Q Consensus 500 lv~e~~~~g~L~~~l~~~~~~~~~~~~~~i~~~i~~~l~~LH~~~~~~~ivH~dlk~~Nill~~~~~~kl~Dfgl~~~~~ 579 (717)
+||||+++|+|.++++.....+++..+..++.|++.||.||| +.+|+||||||+|||++.++.+||+|||+++...
T Consensus 467 lv~E~~~~g~L~~~l~~~~~~l~~~~~~~i~~qi~~aL~~LH----~~givHrDikp~NILl~~~~~vkL~DFG~a~~~~ 542 (656)
T 2j0j_A 467 IIMELCTLGELRSFLQVRKFSLDLASLILYAYQLSTALAYLE----SKRFVHRDIAARNVLVSSNDCVKLGDFGLSRYME 542 (656)
T ss_dssp EEEECCTTCBHHHHHHHTTTTCCHHHHHHHHHHHHHHHHHHH----HTTCCCSCCSGGGEEEEETTEEEECCCCCCCSCC
T ss_pred EEEEcCCCCcHHHHHHhccCCCCHHHHHHHHHHHHHHHHHHH----hCCccccccchHhEEEeCCCCEEEEecCCCeecC
Confidence 999999999999999977767999999999999999999999 6789999999999999999999999999998764
Q ss_pred CCCCceeeeccccCccccCCCccCCCCcCcccchhhHHHHHHHHHh-CCCCCCccccCcchHHHHHHhhCCCchhhhccc
Q 005040 580 EGEDSVIQTMTMATIGYMAPEYGSEGIVSTKCDVYSYGVLLMETFT-EKKPTDEMFTGEMSLRRWVKESLPHRLTEVVDA 658 (717)
Q Consensus 580 ~~~~~~~~~~~~~t~~y~aPE~~~~~~~~~~~Dvws~G~il~el~t-g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 658 (717)
.... .......+|+.|+|||++.+..++.++||||||+++|||++ |..||.+.... .....+......
T Consensus 543 ~~~~-~~~~~~~~t~~y~aPE~~~~~~~~~~~DiwSlG~il~ellt~g~~Pf~~~~~~--~~~~~i~~~~~~-------- 611 (656)
T 2j0j_A 543 DSTY-YKASKGKLPIKWMAPESINFRRFTSASDVWMFGVCMWEILMHGVKPFQGVKNN--DVIGRIENGERL-------- 611 (656)
T ss_dssp C-----------CCGGGCCHHHHHHCCCCHHHHHHHHHHHHHHHHTTSCCTTTTCCHH--HHHHHHHHTCCC--------
T ss_pred CCcc-eeccCCCCCcceeCHHHhcCCCCCchhhHHHHHHHHHHHHHcCCCCCCCCCHH--HHHHHHHcCCCC--------
Confidence 4322 12233456789999999988899999999999999999997 99999763221 111111111100
Q ss_pred cchhhhhhhhhhHHHHHHHHHHHhhccCCCCCCCCCHHHHHHHHHHhHHh
Q 005040 659 NLVREEQAFSDKMDCLFSIMDLALDCCMDTPHKRIHMTDAAAKLRKIKAK 708 (717)
Q Consensus 659 ~~~~~~~~~~~~~~~~~~l~~li~~cl~~~P~~Rpt~~ev~~~L~~~~~~ 708 (717)
+.+..++..+.+++.+||+.||++|||+.|+++.|+++.+.
T Consensus 612 ---------~~~~~~~~~l~~li~~~l~~dP~~RPs~~el~~~L~~il~~ 652 (656)
T 2j0j_A 612 ---------PMPPNCPPTLYSLMTKCWAYDPSRRPRFTELKAQLSTILEE 652 (656)
T ss_dssp ---------CCCTTCCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHHHH
T ss_pred ---------CCCccccHHHHHHHHHHcCCChhHCcCHHHHHHHHHHHHHH
Confidence 01123456788999999999999999999999999998654
No 237
>2i6l_A Mitogen-activated protein kinase 6; MAPK6, ERK3, extracellular signal regulated kinase 3, serine phosphorylation, threonine phosphorylation; 2.25A {Homo sapiens}
Probab=100.00 E-value=1.7e-38 Score=330.97 Aligned_cols=266 Identities=21% Similarity=0.287 Sum_probs=195.5
Q ss_pred hccCCccccccccccEEEEEEEec-CCCeEEEEEechhhHHHHHHHHHHHHHHHhcCCCceeeEeeeee-----------
Q 005040 426 TDEFNECNLLGTGGFGSVYKGTLS-DGTNVAIKIFNLQLERAFRSFDSECEILRNVRHRNLLKILGSCS----------- 493 (717)
Q Consensus 426 ~~~~~~~~~lg~G~~g~V~~~~~~-~~~~vavK~~~~~~~~~~~~~~~e~~~l~~l~hpniv~~~~~~~----------- 493 (717)
.++|++.+.||+|+||.||+|... +++.||+|++........+.+.+|++++++++||||+++++++.
T Consensus 10 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~~~~~~~~ 89 (320)
T 2i6l_A 10 GSRYMDLKPLGCGGNGLVFSAVDNDCDKRVAIKKIVLTDPQSVKHALREIKIIRRLDHDNIVKVFEILGPSGSQLTDDVG 89 (320)
T ss_dssp TTTEEEEEECC-----CEEEEEETTTTEEEEEEEEECCSHHHHHHHHHHHHHHHTCCCTTBCCEEEEECTTSCBCCC---
T ss_pred CCceeEEEEeccCCCeEEEEEEECCCCeEEEEEEEecCChHHHHHHHHHHHHHHhcCCCCeeEEEEeccccccccccccc
Confidence 368899999999999999999976 58999999987665666678899999999999999999999873
Q ss_pred ---cCCeeEEEEEccCCCCHHHHHhhCCCCCCHHHHHHHHHHHHHHHHHHhhcCCCCCeEecCCCCCCeeeC-CCCcEEE
Q 005040 494 ---NLDFKALVLEFMPNGSLEKWLYSHNYFLDILQRLNIMIDVGSALEYLHHCHSSAPIIHCDLKPTNILLD-ENMVAHV 569 (717)
Q Consensus 494 ---~~~~~~lv~e~~~~g~L~~~l~~~~~~~~~~~~~~i~~~i~~~l~~LH~~~~~~~ivH~dlk~~Nill~-~~~~~kl 569 (717)
+....++||||++ |+|.+++... .+++..+..++.|++.||+||| +.+|+||||||+||+++ .++.+||
T Consensus 90 ~~~~~~~~~lv~e~~~-~~L~~~~~~~--~~~~~~~~~~~~qi~~~l~~lH----~~~i~H~dlkp~Nil~~~~~~~~kl 162 (320)
T 2i6l_A 90 SLTELNSVYIVQEYME-TDLANVLEQG--PLLEEHARLFMYQLLRGLKYIH----SANVLHRDLKPANLFINTEDLVLKI 162 (320)
T ss_dssp -CCSCSEEEEEEECCS-EEHHHHHTTC--CCCHHHHHHHHHHHHHHHHHHH----HTTCBCCCCSGGGEEEETTTTEEEE
T ss_pred cccccCceeEEeeccC-CCHHHHhhcC--CccHHHHHHHHHHHHHHHHHHH----hCCEecCCCCHHHEEEcCCCCeEEE
Confidence 4467899999997 6999999754 4899999999999999999999 67899999999999997 5779999
Q ss_pred eeeccccccCCCCCc-eeeeccccCccccCCCccCC-CCcCcccchhhHHHHHHHHHhCCCCCCccccCcchHHHHHHhh
Q 005040 570 SDFGISKLLGEGEDS-VIQTMTMATIGYMAPEYGSE-GIVSTKCDVYSYGVLLMETFTEKKPTDEMFTGEMSLRRWVKES 647 (717)
Q Consensus 570 ~Dfgl~~~~~~~~~~-~~~~~~~~t~~y~aPE~~~~-~~~~~~~Dvws~G~il~el~tg~~p~~~~~~~~~~~~~~~~~~ 647 (717)
+|||++......... .......+|..|+|||.+.+ ..++.++||||||+++|||++|+.||...... .....+...
T Consensus 163 ~Dfg~~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~~Di~slG~il~el~~g~~pf~~~~~~--~~~~~~~~~ 240 (320)
T 2i6l_A 163 GDFGLARIMDPHYSHKGHLSEGLVTKWYRSPRLLLSPNNYTKAIDMWAAGCIFAEMLTGKTLFAGAHEL--EQMQLILES 240 (320)
T ss_dssp CCCTTCBCC--------CCCGGGSCCTTCCHHHHHCTTCCCHHHHHHHHHHHHHHHHHSSCSSCCSSHH--HHHHHHHHH
T ss_pred ccCccccccCCCcccccccccccccccccCcHHhcCcccCCchhhhHhHHHHHHHHHhCCCCCCCCCHH--HHHHHHHHh
Confidence 999999876432211 12233457999999997654 67899999999999999999999999764321 111111111
Q ss_pred CCCc----hhhhcc-------ccchhhh-hhhhhhHHHHHHHHHHHhhccCCCCCCCCCHHHHHH
Q 005040 648 LPHR----LTEVVD-------ANLVREE-QAFSDKMDCLFSIMDLALDCCMDTPHKRIHMTDAAA 700 (717)
Q Consensus 648 ~~~~----~~~~~~-------~~~~~~~-~~~~~~~~~~~~l~~li~~cl~~~P~~Rpt~~ev~~ 700 (717)
.+.. ..+... ....... +.......++.++.+++.+||+.||++|||++|+++
T Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~Rpt~~ell~ 305 (320)
T 2i6l_A 241 IPVVHEEDRQELLSVIPVYIRNDMTEPHKPLTQLLPGISREAVDFLEQILTFSPMDRLTAEEALS 305 (320)
T ss_dssp SCCCCHHHHHHHHTTSCHHHHHHTTSCCCCHHHHSTTCCHHHHHHHHTTSCSSGGGSCCHHHHHT
T ss_pred cCCCchhhhhhhhhcCcccccccccCCCCChhHhcchhhHHHHHHHHHHcCCCccccCCHHHHhC
Confidence 1110 000000 0000000 000011235677899999999999999999999986
No 238
>1zy4_A Serine/threonine-protein kinase GCN2; translation regulator, signal transduction, acid starvation, starvation stress response; 1.95A {Saccharomyces cerevisiae} PDB: 1zy5_A* 1zyd_A* 1zyc_A* 1zxe_A
Probab=100.00 E-value=2.5e-38 Score=326.99 Aligned_cols=253 Identities=24% Similarity=0.323 Sum_probs=193.5
Q ss_pred HhccCCccccccccccEEEEEEEec-CCCeEEEEEechhhHHHHHHHHHHHHHHHhcCCCceeeEeeeeec---------
Q 005040 425 ATDEFNECNLLGTGGFGSVYKGTLS-DGTNVAIKIFNLQLERAFRSFDSECEILRNVRHRNLLKILGSCSN--------- 494 (717)
Q Consensus 425 ~~~~~~~~~~lg~G~~g~V~~~~~~-~~~~vavK~~~~~~~~~~~~~~~e~~~l~~l~hpniv~~~~~~~~--------- 494 (717)
..++|++.+.||+|+||.||+|... +++.||+|++... ....+.+.+|++++++++||||+++++++.+
T Consensus 4 ~~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~-~~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~~~~~~~~~~ 82 (303)
T 1zy4_A 4 YASDFEEIAVLGQGAFGQVVKARNALDSRYYAIKKIRHT-EEKLSTILSEVMLLASLNHQYVVRYYAAWLERRNFVKPMT 82 (303)
T ss_dssp HHHHEEEEEEEEECSSEEEEEEEETTTCCEEEEEEEEEE-HHHHHHHHHHHHHHTTCCCTTBCCEEEEEEECCCCCC---
T ss_pred ccccchhhheeccCCcEEEEEEEEcCCCeEEEEEEEecc-HHHHHHHHHHHHHHHhcCchHHHHHHHHHHhhcchhhhhc
Confidence 3568999999999999999999975 7999999998654 3345778899999999999999999998754
Q ss_pred ----CCeeEEEEEccCCCCHHHHHhhCCCCCCHHHHHHHHHHHHHHHHHHhhcCCCCCeEecCCCCCCeeeCCCCcEEEe
Q 005040 495 ----LDFKALVLEFMPNGSLEKWLYSHNYFLDILQRLNIMIDVGSALEYLHHCHSSAPIIHCDLKPTNILLDENMVAHVS 570 (717)
Q Consensus 495 ----~~~~~lv~e~~~~g~L~~~l~~~~~~~~~~~~~~i~~~i~~~l~~LH~~~~~~~ivH~dlk~~Nill~~~~~~kl~ 570 (717)
....++||||+++|+|.+++......+++..++.++.|+++||+||| +.+|+||||||+||+++.++.+||+
T Consensus 83 ~~~~~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~i~~qi~~~l~~LH----~~~i~H~dlkp~Nil~~~~~~~kl~ 158 (303)
T 1zy4_A 83 AVKKKSTLFIQMEYCENGTLYDLIHSENLNQQRDEYWRLFRQILEALSYIH----SQGIIHRDLKPMNIFIDESRNVKIG 158 (303)
T ss_dssp ---CEEEEEEEEECCCSCBHHHHHHHSCGGGCHHHHHHHHHHHHHHHHHHH----HTTCCCSCCCGGGEEECTTSCEEEC
T ss_pred ccccCCceEEEEecCCCCCHHHhhhccccccchHHHHHHHHHHHHHHHHHH----hCCeecccCCHHhEEEcCCCCEEEe
Confidence 35679999999999999999987767889999999999999999999 6789999999999999999999999
Q ss_pred eeccccccCCCCC------------ceeeeccccCccccCCCccCCC-CcCcccchhhHHHHHHHHHhCCCCCCccccCc
Q 005040 571 DFGISKLLGEGED------------SVIQTMTMATIGYMAPEYGSEG-IVSTKCDVYSYGVLLMETFTEKKPTDEMFTGE 637 (717)
Q Consensus 571 Dfgl~~~~~~~~~------------~~~~~~~~~t~~y~aPE~~~~~-~~~~~~Dvws~G~il~el~tg~~p~~~~~~~~ 637 (717)
|||++........ ........||+.|+|||++.+. .++.++||||+|+++|||++ ||.......
T Consensus 159 dfg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~~Di~slG~il~~l~~---p~~~~~~~~ 235 (303)
T 1zy4_A 159 DFGLAKNVHRSLDILKLDSQNLPGSSDNLTSAIGTAMYVATEVLDGTGHYNEKIDMYSLGIIFFEMIY---PFSTGMERV 235 (303)
T ss_dssp CCCCCSCTTC-------------------------CTTSCHHHHTSCSCCCTHHHHHHHHHHHHHHHS---CCSSHHHHH
T ss_pred eCcchhhcccccchhccccccccccccccccCCCcccccCcccccCCCCCcchhhHHHHHHHHHHHHh---ccCCchhHH
Confidence 9999987643211 1122344689999999988754 78999999999999999998 553211111
Q ss_pred chHHHHHHhhCCCchhhhccccchhhhhhhhhhHHHHHHHHHHHhhccCCCCCCCCCHHHHHH
Q 005040 638 MSLRRWVKESLPHRLTEVVDANLVREEQAFSDKMDCLFSIMDLALDCCMDTPHKRIHMTDAAA 700 (717)
Q Consensus 638 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~cl~~~P~~Rpt~~ev~~ 700 (717)
.....+... .... .+.+ ...++..+.+++.+||+.||++|||+.|+++
T Consensus 236 -~~~~~~~~~-~~~~----~~~~---------~~~~~~~~~~li~~~l~~dp~~Rps~~~ll~ 283 (303)
T 1zy4_A 236 -NILKKLRSV-SIEF----PPDF---------DDNKMKVEKKIIRLLIDHDPNKRPGARTLLN 283 (303)
T ss_dssp -HHHHHHHST-TCCC----CTTC---------CTTTSHHHHHHHHHHTCSSGGGSCCHHHHHH
T ss_pred -HHHHhcccc-cccc----Cccc---------cccchHHHHHHHHHHHhcCcccCcCHHHHhC
Confidence 111111100 0000 0000 1123456789999999999999999999986
No 239
>1z57_A Dual specificity protein kinase CLK1; protein tyrosine kinase, splicing, human, 10Z-hymendialdisine, structural genomics; HET: DBQ; 1.70A {Homo sapiens} PDB: 2vag_A*
Probab=100.00 E-value=6.5e-38 Score=329.37 Aligned_cols=263 Identities=23% Similarity=0.280 Sum_probs=202.8
Q ss_pred hccCCccccccccccEEEEEEEe-c-CCCeEEEEEechhhHHHHHHHHHHHHHHHhcCCC------ceeeEeeeeecCCe
Q 005040 426 TDEFNECNLLGTGGFGSVYKGTL-S-DGTNVAIKIFNLQLERAFRSFDSECEILRNVRHR------NLLKILGSCSNLDF 497 (717)
Q Consensus 426 ~~~~~~~~~lg~G~~g~V~~~~~-~-~~~~vavK~~~~~~~~~~~~~~~e~~~l~~l~hp------niv~~~~~~~~~~~ 497 (717)
.++|++.+.||+|+||.||+|.. . +++.||||+++... ...+.+.+|+++++.++|+ +++++++++.+.+.
T Consensus 13 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~~vavK~~~~~~-~~~~~~~~e~~~l~~l~~~~~~~~~~i~~~~~~~~~~~~ 91 (339)
T 1z57_A 13 SARYEIVDTLGEGAFGKVVECIDHKAGGRHVAVKIVKNVD-RYCEAARSEIQVLEHLNTTDPNSTFRCVQMLEWFEHHGH 91 (339)
T ss_dssp TTTEEEEEEEEEETTEEEEEEEETTTTTEEEEEEEECSSH-HHHHHHHHHHHHHHHHHHHCTTCTTCBCCEEEEEEETTE
T ss_pred cCceEEEEEEecCCCeEEEEEEecCCCCcEEEEEEEecCC-chhHHHHHHHHHHHHhhhcCCCCceeeEeeecccccCCc
Confidence 36899999999999999999986 3 68899999997543 3446778899999998765 49999999999999
Q ss_pred eEEEEEccCCCCHHHHHhhCC-CCCCHHHHHHHHHHHHHHHHHHhhcCCCCCeEecCCCCCCeeeCC-------------
Q 005040 498 KALVLEFMPNGSLEKWLYSHN-YFLDILQRLNIMIDVGSALEYLHHCHSSAPIIHCDLKPTNILLDE------------- 563 (717)
Q Consensus 498 ~~lv~e~~~~g~L~~~l~~~~-~~~~~~~~~~i~~~i~~~l~~LH~~~~~~~ivH~dlk~~Nill~~------------- 563 (717)
.++||||+ +++|.+++.... ..+++..+..++.|++.||+||| +.+|+||||||+||+++.
T Consensus 92 ~~lv~e~~-~~~l~~~l~~~~~~~~~~~~~~~~~~qi~~~l~~lH----~~~ivH~Dlkp~Nil~~~~~~~~~~~~~~~~ 166 (339)
T 1z57_A 92 ICIVFELL-GLSTYDFIKENGFLPFRLDHIRKMAYQICKSVNFLH----SNKLTHTDLKPENILFVQSDYTEAYNPKIKR 166 (339)
T ss_dssp EEEEEECC-CCBHHHHHHHTTTCCCCHHHHHHHHHHHHHHHHHHH----HTTEECCCCCGGGEEESCCCEEEEEC----C
T ss_pred EEEEEcCC-CCCHHHHHHhcCCCCCcHHHHHHHHHHHHHHHHHHH----HCCCcCCCCCHHHEEEeccccccccCCcccc
Confidence 99999999 889999998654 35889999999999999999999 678999999999999987
Q ss_pred ------CCcEEEeeeccccccCCCCCceeeeccccCccccCCCccCCCCcCcccchhhHHHHHHHHHhCCCCCCccccCc
Q 005040 564 ------NMVAHVSDFGISKLLGEGEDSVIQTMTMATIGYMAPEYGSEGIVSTKCDVYSYGVLLMETFTEKKPTDEMFTGE 637 (717)
Q Consensus 564 ------~~~~kl~Dfgl~~~~~~~~~~~~~~~~~~t~~y~aPE~~~~~~~~~~~Dvws~G~il~el~tg~~p~~~~~~~~ 637 (717)
++.+||+|||++....... ....||+.|+|||++.+..++.++||||||+++|||++|+.||......+
T Consensus 167 ~~~~~~~~~~kl~Dfg~~~~~~~~~-----~~~~gt~~y~aPE~~~~~~~~~~~Di~slG~il~el~~g~~pf~~~~~~~ 241 (339)
T 1z57_A 167 DERTLINPDIKVVDFGSATYDDEHH-----STLVSTRHYRAPEVILALGWSQPCDVWSIGCILIEYYLGFTVFPTHDSKE 241 (339)
T ss_dssp EEEEESCCCEEECCCSSCEETTSCC-----CSSCSCGGGCCHHHHTTSCCCTHHHHHHHHHHHHHHHHSSCSCCCSCHHH
T ss_pred ccccccCCCceEeeCcccccCcccc-----ccccCCccccChHHhhCCCCCcchhhHHHHHHHHHHHhCCCCCCCCChHH
Confidence 6789999999998754322 33468999999999999999999999999999999999999997632211
Q ss_pred chHHHHHHhh--CCCchhhhc-----------------------cccchhhhhhhhhhHHHHHHHHHHHhhccCCCCCCC
Q 005040 638 MSLRRWVKES--LPHRLTEVV-----------------------DANLVREEQAFSDKMDCLFSIMDLALDCCMDTPHKR 692 (717)
Q Consensus 638 ~~~~~~~~~~--~~~~~~~~~-----------------------~~~~~~~~~~~~~~~~~~~~l~~li~~cl~~~P~~R 692 (717)
......... .+....... ................++.++.+++.+||+.||++|
T Consensus 242 -~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~~L~~dP~~R 320 (339)
T 1z57_A 242 -HLAMMERILGPLPKHMIQKTRKRKYFHHDRLDWDEHSSAGRYVSRACKPLKEFMLSQDVEHERLFDLIQKMLEYDPAKR 320 (339)
T ss_dssp -HHHHHHHHHCSCCHHHHHHCSCGGGEETTEECCCTTSHHHHHHHHHCCCGGGGCSCCSHHHHHHHHHHHHHTCSSTTTS
T ss_pred -HHHHHHHHhCCCCHHHHhhccchhHHhhccccccccccccchhhhcCcchhhhcccchhhHHHHHHHHHHHhCcCcccc
Confidence 111111111 110000000 000000000011123456789999999999999999
Q ss_pred CCHHHHHH
Q 005040 693 IHMTDAAA 700 (717)
Q Consensus 693 pt~~ev~~ 700 (717)
||++|+++
T Consensus 321 pt~~ell~ 328 (339)
T 1z57_A 321 ITLREALK 328 (339)
T ss_dssp CCHHHHTT
T ss_pred cCHHHHhc
Confidence 99999985
No 240
>2b9h_A MAP kinase FUS3, mitogen-activated protein kinase FUS3; transferase; HET: ADP; 1.55A {Saccharomyces cerevisiae} PDB: 2b9i_A* 2b9j_A* 2f49_A 2fa2_A 2b9f_A* 2f9g_A*
Probab=100.00 E-value=4e-38 Score=332.97 Aligned_cols=267 Identities=24% Similarity=0.243 Sum_probs=200.0
Q ss_pred hccCCccccccccccEEEEEEEec-CCCeEEEEEechhh-HHHHHHHHHHHHHHHhcCCCceeeEeeeeecC-----Cee
Q 005040 426 TDEFNECNLLGTGGFGSVYKGTLS-DGTNVAIKIFNLQL-ERAFRSFDSECEILRNVRHRNLLKILGSCSNL-----DFK 498 (717)
Q Consensus 426 ~~~~~~~~~lg~G~~g~V~~~~~~-~~~~vavK~~~~~~-~~~~~~~~~e~~~l~~l~hpniv~~~~~~~~~-----~~~ 498 (717)
.++|++.+.||+|+||.||+|... +|+.||||++.... ......+.+|++++++++||||+++++++... ...
T Consensus 10 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~~~~~ 89 (353)
T 2b9h_A 10 SSDFQLKSLLGEGAYGVVCSATHKPTGEIVAIKKIEPFDKPLFALRTLREIKILKHFKHENIITIFNIQRPDSFENFNEV 89 (353)
T ss_dssp CTTEEEEEEEEECSSEEEEEEEETTTTEEEEEEEECCCSSHHHHHHHHHHHHHHHHCCCTTBCCEEEECCCSCSTTCCCE
T ss_pred ccceEEeeEEcCCCCeEEEEEEECCCCcEEEEEeecccccchHHHHHHHHHHHHHhCcCCCcCCeeeeecccccCccceE
Confidence 468999999999999999999976 78999999986433 33446778999999999999999999987653 678
Q ss_pred EEEEEccCCCCHHHHHhhCCCCCCHHHHHHHHHHHHHHHHHHhhcCCCCCeEecCCCCCCeeeCCCCcEEEeeecccccc
Q 005040 499 ALVLEFMPNGSLEKWLYSHNYFLDILQRLNIMIDVGSALEYLHHCHSSAPIIHCDLKPTNILLDENMVAHVSDFGISKLL 578 (717)
Q Consensus 499 ~lv~e~~~~g~L~~~l~~~~~~~~~~~~~~i~~~i~~~l~~LH~~~~~~~ivH~dlk~~Nill~~~~~~kl~Dfgl~~~~ 578 (717)
++||||+. |+|.+++... .+++..+..++.|++.||+||| +.+|+||||||+||+++.++.+||+|||++...
T Consensus 90 ~lv~e~~~-~~L~~~~~~~--~~~~~~~~~~~~qi~~~L~~LH----~~~ivH~Dlkp~Nil~~~~~~~kl~Dfg~a~~~ 162 (353)
T 2b9h_A 90 YIIQELMQ-TDLHRVISTQ--MLSDDHIQYFIYQTLRAVKVLH----GSNVIHRDLKPSNLLINSNCDLKVCDFGLARII 162 (353)
T ss_dssp EEEECCCS-EEHHHHHHHC--CCCHHHHHHHHHHHHHHHHHHH----HTTEECSCCCGGGEEECTTCCEEECCCTTCEEC
T ss_pred EEEEeccC-ccHHHHHhhc--CCCHHHHHHHHHHHHHHHHHHH----HCCeecCCCCHHHeEEcCCCcEEEEeccccccc
Confidence 99999997 6999999874 4899999999999999999999 678999999999999999999999999999876
Q ss_pred CCCCCce--------eeeccccCccccCCCccC-CCCcCcccchhhHHHHHHHHHhCCCCCCccccCcchHHHHHHhhC-
Q 005040 579 GEGEDSV--------IQTMTMATIGYMAPEYGS-EGIVSTKCDVYSYGVLLMETFTEKKPTDEMFTGEMSLRRWVKESL- 648 (717)
Q Consensus 579 ~~~~~~~--------~~~~~~~t~~y~aPE~~~-~~~~~~~~Dvws~G~il~el~tg~~p~~~~~~~~~~~~~~~~~~~- 648 (717)
....... ......||+.|+|||++. +..++.++||||+||++|||++|+.||.+..... ..........
T Consensus 163 ~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~Di~slG~il~~l~~g~~pf~~~~~~~-~~~~~~~~~~~ 241 (353)
T 2b9h_A 163 DESAADNSEPTGQQSGMVEFVATRWYRAPEVMLTSAKYSRAMDVWSCGCILAELFLRRPIFPGRDYRH-QLLLIFGIIGT 241 (353)
T ss_dssp C----------------CCCCCCGGGCCHHHHHSCCCCCHHHHHHHHHHHHHHHHHSSCSCCCSSHHH-HHHHHHHHHCC
T ss_pred ccccccccCccccccchhhccccccccCCeeeccCCCccchhhHHHHHHHHHHHHhCCCCCCCCCcHH-HHHHHHHHhCC
Confidence 5332111 112346899999999764 4778999999999999999999999997632211 1111111110
Q ss_pred CC---chhhhccccchhhh---------hhhhhhHHHHHHHHHHHhhccCCCCCCCCCHHHHHH
Q 005040 649 PH---RLTEVVDANLVREE---------QAFSDKMDCLFSIMDLALDCCMDTPHKRIHMTDAAA 700 (717)
Q Consensus 649 ~~---~~~~~~~~~~~~~~---------~~~~~~~~~~~~l~~li~~cl~~~P~~Rpt~~ev~~ 700 (717)
+. .............. ........++.++.+++.+||+.||++|||++|+++
T Consensus 242 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~Rpt~~ell~ 305 (353)
T 2b9h_A 242 PHSDNDLRCIESPRAREYIKSLPMYPAAPLEKMFPRVNPKGIDLLQRMLVFDPAKRITAKEALE 305 (353)
T ss_dssp CCSTTTTTTCCCHHHHHHHHTSCCCCCCCHHHHSTTSCHHHHHHHHHHSCSSGGGSCCHHHHHT
T ss_pred CchhccccccccchhhHHhhcccCCCCcchhhhcccCCHHHHHHHHHhcCcCcccCCCHHHHhc
Confidence 00 00000000000000 000011234567899999999999999999999986
No 241
>2y4i_B KSR2, HKSR2, kinase suppressor of RAS 2; transferase, KSR1; HET: ATP; 3.46A {Homo sapiens}
Probab=100.00 E-value=8.4e-40 Score=340.73 Aligned_cols=260 Identities=23% Similarity=0.360 Sum_probs=199.8
Q ss_pred HhccCCccccccccccEEEEEEEecCCCeEEEEEechhh--HHHHHHHHHHHHHHHhcCCCceeeEeeeeecCCeeEEEE
Q 005040 425 ATDEFNECNLLGTGGFGSVYKGTLSDGTNVAIKIFNLQL--ERAFRSFDSECEILRNVRHRNLLKILGSCSNLDFKALVL 502 (717)
Q Consensus 425 ~~~~~~~~~~lg~G~~g~V~~~~~~~~~~vavK~~~~~~--~~~~~~~~~e~~~l~~l~hpniv~~~~~~~~~~~~~lv~ 502 (717)
..++|++.+.||+|+||.||+|..++ .||+|++.... ....+.+.+|+.++++++||||+++++++.+.+..++||
T Consensus 31 ~~~~~~~~~~lg~G~~g~V~~~~~~~--~~avk~~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~~~iv~ 108 (319)
T 2y4i_B 31 PFEQLEIGELIGKGRFGQVYHGRWHG--EVAIRLIDIERDNEDQLKAFKREVMAYRQTRHENVVLFMGACMSPPHLAIIT 108 (319)
T ss_dssp CCSCEECCCBCCCSSSSEEEEEEESS--SEEEEECCCCSCCCCCCCCCCTTGGGGTTCCCTTBCCCCEEEECSSCEEEEC
T ss_pred CHHHeEEeeEeccCCceEEEEEEEcC--eEEEEEeecCCCCHHHHHHHHHHHHHHhcCCCCCEeEEEEEEecCCceEEEe
Confidence 34789999999999999999999753 59999986542 222345677999999999999999999999999999999
Q ss_pred EccCCCCHHHHHhhCCCCCCHHHHHHHHHHHHHHHHHHhhcCCCCCeEecCCCCCCeeeCCCCcEEEeeeccccccCCCC
Q 005040 503 EFMPNGSLEKWLYSHNYFLDILQRLNIMIDVGSALEYLHHCHSSAPIIHCDLKPTNILLDENMVAHVSDFGISKLLGEGE 582 (717)
Q Consensus 503 e~~~~g~L~~~l~~~~~~~~~~~~~~i~~~i~~~l~~LH~~~~~~~ivH~dlk~~Nill~~~~~~kl~Dfgl~~~~~~~~ 582 (717)
||+++++|.+++...+..+++..+..++.|++.||+||| +.+|+||||||+||+++ ++.+||+|||++.......
T Consensus 109 e~~~~~~L~~~l~~~~~~~~~~~~~~i~~qi~~al~~lH----~~~i~H~dlkp~NIl~~-~~~~~l~Dfg~~~~~~~~~ 183 (319)
T 2y4i_B 109 SLCKGRTLYSVVRDAKIVLDVNKTRQIAQEIVKGMGYLH----AKGILHKDLKSKNVFYD-NGKVVITDFGLFSISGVLQ 183 (319)
T ss_dssp BCCCSEEHHHHTTSSCCCCCSHHHHHHHHHHHHHHHHHH----HTTCCCCCCCSTTEEEC---CCEECCCSCCC------
T ss_pred ecccCCcHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHH----hCCccccCCChhhEEEe-CCCEEEeecCCcccccccc
Confidence 999999999999887767999999999999999999999 67899999999999998 6799999999987653221
Q ss_pred C---ceeeeccccCccccCCCccCC---------CCcCcccchhhHHHHHHHHHhCCCCCCccccCcchHHHHHHhhCCC
Q 005040 583 D---SVIQTMTMATIGYMAPEYGSE---------GIVSTKCDVYSYGVLLMETFTEKKPTDEMFTGEMSLRRWVKESLPH 650 (717)
Q Consensus 583 ~---~~~~~~~~~t~~y~aPE~~~~---------~~~~~~~Dvws~G~il~el~tg~~p~~~~~~~~~~~~~~~~~~~~~ 650 (717)
. ........||+.|+|||++.+ ..++.++||||||+++|||++|+.||...... .....+.....
T Consensus 184 ~~~~~~~~~~~~g~~~y~aPE~~~~~~~~~~~~~~~~~~~~Di~slG~il~el~~g~~p~~~~~~~--~~~~~~~~~~~- 260 (319)
T 2y4i_B 184 AGRREDKLRIQNGWLCHLAPEIIRQLSPDTEEDKLPFSKHSDVFALGTIWYELHAREWPFKTQPAE--AIIWQMGTGMK- 260 (319)
T ss_dssp ----CCSCBCCSGGGGTSCHHHHSCBSCC--CCCSCCCHHHHHHHHHHHHHHHHHSSCSSSSCCHH--HHHHHHHTTCC-
T ss_pred ccccccccccCCCcccccChHHhhhccccccccccCCCchhhHHHHHHHHHHHHhCCCCCCCCCHH--HHHHHhccCCC-
Confidence 1 112233458999999998764 45789999999999999999999999753221 11111111100
Q ss_pred chhhhccccchhhhhhhhhhHHHHHHHHHHHhhccCCCCCCCCCHHHHHHHHHHhHHhh
Q 005040 651 RLTEVVDANLVREEQAFSDKMDCLFSIMDLALDCCMDTPHKRIHMTDAAAKLRKIKAKF 709 (717)
Q Consensus 651 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~cl~~~P~~Rpt~~ev~~~L~~~~~~~ 709 (717)
+... ...++.++.+++.+||+.||++|||+.++++.|+++.+..
T Consensus 261 -------~~~~--------~~~~~~~l~~li~~~l~~~p~~Rpt~~~l~~~l~~l~~~~ 304 (319)
T 2y4i_B 261 -------PNLS--------QIGMGKEISDILLFCWAFEQEERPTFTKLMDMLEKLPKRN 304 (319)
T ss_dssp -------CCCC--------CSSCCTTHHHHHHHHHCSSTTTSCCHHHHHHHHTTC----
T ss_pred -------CCCC--------cCCCCHHHHHHHHHHhcCChhhCcCHHHHHHHHHHHHHhh
Confidence 0000 0123345789999999999999999999999999987654
No 242
>4exu_A Mitogen-activated protein kinase 13; P38 kinase, transferase; 1.70A {Homo sapiens} PDB: 4eyj_A* 4eym_A* 3coi_A
Probab=100.00 E-value=4.5e-38 Score=334.28 Aligned_cols=262 Identities=21% Similarity=0.238 Sum_probs=197.2
Q ss_pred hccCCccccccccccEEEEEEEec-CCCeEEEEEechhh--HHHHHHHHHHHHHHHhcCCCceeeEeeeeecCCee----
Q 005040 426 TDEFNECNLLGTGGFGSVYKGTLS-DGTNVAIKIFNLQL--ERAFRSFDSECEILRNVRHRNLLKILGSCSNLDFK---- 498 (717)
Q Consensus 426 ~~~~~~~~~lg~G~~g~V~~~~~~-~~~~vavK~~~~~~--~~~~~~~~~e~~~l~~l~hpniv~~~~~~~~~~~~---- 498 (717)
.++|...+.||+|+||.||+|... +|+.||||++.... ....+.+.+|+.+++.++||||+++++++...+..
T Consensus 41 ~~~y~~~~~lG~G~~g~Vy~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~~~~~~~~~~~~~~~~ 120 (371)
T 4exu_A 41 PKTYVSPTHVGSGAYGSVCSAIDKRSGEKVAIKKLSRPFQSEIFAKRAYRELLLLKHMQHENVIGLLDVFTPASSLRNFY 120 (371)
T ss_dssp ETTEEEEEEEEECSSEEEEEEEETTTTEEEEEEEECSTTSSHHHHHHHHHHHHHHHHCCCTTBCCCSEEECSCSSSTTCC
T ss_pred cccEEEEeEEecCCCeEEEEEEECCCCCEEEEEEecccccchhHHHHHHHHHHHHHhcCCCCchhhhhheeccCCcccce
Confidence 368899999999999999999875 78999999997542 33456788999999999999999999999877654
Q ss_pred --EEEEEccCCCCHHHHHhhCCCCCCHHHHHHHHHHHHHHHHHHhhcCCCCCeEecCCCCCCeeeCCCCcEEEeeecccc
Q 005040 499 --ALVLEFMPNGSLEKWLYSHNYFLDILQRLNIMIDVGSALEYLHHCHSSAPIIHCDLKPTNILLDENMVAHVSDFGISK 576 (717)
Q Consensus 499 --~lv~e~~~~g~L~~~l~~~~~~~~~~~~~~i~~~i~~~l~~LH~~~~~~~ivH~dlk~~Nill~~~~~~kl~Dfgl~~ 576 (717)
++||||+. ++|.+++.. .+++..+..++.|++.||+||| +.+|+||||||+||+++.++.+||+|||+++
T Consensus 121 ~~~lv~e~~~-~~l~~~~~~---~~~~~~~~~i~~qi~~aL~~LH----~~~ivH~Dikp~NIll~~~~~~kL~Dfg~a~ 192 (371)
T 4exu_A 121 DFYLVMPFMQ-TDLQKIMGM---EFSEEKIQYLVYQMLKGLKYIH----SAGVVHRDLKPGNLAVNEDCELKILDFGLAR 192 (371)
T ss_dssp CCEEEEECCC-EEHHHHTTS---CCCHHHHHHHHHHHHHHHHHHH----HTTCCCSCCCGGGEEECTTCCEEECSTTCC-
T ss_pred eEEEEEcccc-ccHHHHhhc---CCCHHHHHHHHHHHHHHHHHHH----HCCCcCCCcCHHHeEECCCCCEEEEecCccc
Confidence 99999997 689888743 3899999999999999999999 6789999999999999999999999999998
Q ss_pred ccCCCCCceeeeccccCccccCCCccCC-CCcCcccchhhHHHHHHHHHhCCCCCCccccCcchHHHHHHhhCCC--chh
Q 005040 577 LLGEGEDSVIQTMTMATIGYMAPEYGSE-GIVSTKCDVYSYGVLLMETFTEKKPTDEMFTGEMSLRRWVKESLPH--RLT 653 (717)
Q Consensus 577 ~~~~~~~~~~~~~~~~t~~y~aPE~~~~-~~~~~~~Dvws~G~il~el~tg~~p~~~~~~~~~~~~~~~~~~~~~--~~~ 653 (717)
..... .....||+.|+|||++.+ ..++.++||||+|+++|||++|+.||.+.... ..+.......... ...
T Consensus 193 ~~~~~-----~~~~~~t~~y~aPE~~~~~~~~~~~~DiwslG~il~el~~g~~pf~~~~~~-~~~~~i~~~~~~~~~~~~ 266 (371)
T 4exu_A 193 HADAE-----MTGYVVTRWYRAPEVILSWMHYNQTVDIWSVGCIMAEMLTGKTLFKGKDYL-DQLTQILKVTGVPGTEFV 266 (371)
T ss_dssp ------------CTTCCCTTSCHHHHSCCSCCCTTHHHHHHHHHHHHHHHSSCSCCCSSHH-HHHHHHHHHHCCCCHHHH
T ss_pred ccccC-----cCCcccCccccCHHHhcCCCCCCcHHhHHHHHHHHHHHHhCCCCCCCCChH-HHHHHHHHHhCCCcHHHH
Confidence 65432 234568999999998876 78999999999999999999999999763221 1112211111110 000
Q ss_pred hhccccchhhh---------hh-hhhhHHHHHHHHHHHhhccCCCCCCCCCHHHHHHH
Q 005040 654 EVVDANLVREE---------QA-FSDKMDCLFSIMDLALDCCMDTPHKRIHMTDAAAK 701 (717)
Q Consensus 654 ~~~~~~~~~~~---------~~-~~~~~~~~~~l~~li~~cl~~~P~~Rpt~~ev~~~ 701 (717)
..+........ .. ......++.++.+++.+||+.||++|||++|+++.
T Consensus 267 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~Rpt~~ell~h 324 (371)
T 4exu_A 267 QKLNDKAAKSYIQSLPQTPRKDFTQLFPRASPQAADLLEKMLELDVDKRLTAAQALTH 324 (371)
T ss_dssp TTCSCHHHHHHHHHSCCCCCCCHHHHSTTSCHHHHHHHHHHSCSCTTTSCCHHHHHTS
T ss_pred HHhhhhhhhhhhhccCCCcchhHHHhccccChHHHHHHHHHCCCChhhcCCHHHHhcC
Confidence 00000000000 00 00112345678999999999999999999999863
No 243
>2wei_A Calmodulin-domain protein kinase 1, putative; nucleotide-binding, serine/threonine-protein kinase, CGD3_920, transferase; HET: VGG; 1.65A {Cryptosporidium parvum iowa II} PDB: 3dfa_A 3ma6_A*
Probab=100.00 E-value=6e-38 Score=321.41 Aligned_cols=252 Identities=24% Similarity=0.321 Sum_probs=203.7
Q ss_pred HHHhccCCccccccccccEEEEEEEec-CCCeEEEEEechhh--HHHHHHHHHHHHHHHhcCCCceeeEeeeeecCCeeE
Q 005040 423 RRATDEFNECNLLGTGGFGSVYKGTLS-DGTNVAIKIFNLQL--ERAFRSFDSECEILRNVRHRNLLKILGSCSNLDFKA 499 (717)
Q Consensus 423 ~~~~~~~~~~~~lg~G~~g~V~~~~~~-~~~~vavK~~~~~~--~~~~~~~~~e~~~l~~l~hpniv~~~~~~~~~~~~~ 499 (717)
....++|++.+.||+|+||.||+|... +++.||+|++.... ....+.+.+|++++++++||||+++++++.+....+
T Consensus 18 ~~~~~~y~i~~~lg~G~~g~V~~~~~~~~~~~valK~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~ 97 (287)
T 2wei_A 18 GTFAERYNIVCMLGKGSFGEVLKCKDRITQQEYAVKVINKASAKNKDTSTILREVELLKKLDHPNIMKLFEILEDSSSFY 97 (287)
T ss_dssp HHHHHHEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEEGGGBSSSCHHHHHHHHHHHHTCCCTTBCCEEEEEECSSEEE
T ss_pred HHHhhcceeeEEEcCCCCEEEEEEEEcCCCcEEEEEEecccccchHHHHHHHHHHHHHHhccCCCccEEEEEEeCCCeEE
Confidence 444579999999999999999999976 78999999987543 234567889999999999999999999999999999
Q ss_pred EEEEccCCCCHHHHHhhCCCCCCHHHHHHHHHHHHHHHHHHhhcCCCCCeEecCCCCCCeeeCCC---CcEEEeeecccc
Q 005040 500 LVLEFMPNGSLEKWLYSHNYFLDILQRLNIMIDVGSALEYLHHCHSSAPIIHCDLKPTNILLDEN---MVAHVSDFGISK 576 (717)
Q Consensus 500 lv~e~~~~g~L~~~l~~~~~~~~~~~~~~i~~~i~~~l~~LH~~~~~~~ivH~dlk~~Nill~~~---~~~kl~Dfgl~~ 576 (717)
+||||+++++|.+++.... .+++..+..++.|++.||.||| +.+++||||||+||+++.+ +.+||+|||++.
T Consensus 98 lv~e~~~~~~L~~~l~~~~-~~~~~~~~~i~~qi~~~l~~LH----~~~i~H~dl~p~NIlv~~~~~~~~~kL~Dfg~~~ 172 (287)
T 2wei_A 98 IVGELYTGGELFDEIIKRK-RFSEHDAARIIKQVFSGITYMH----KHNIVHRDLKPENILLESKEKDCDIKIIDFGLST 172 (287)
T ss_dssp EEECCCCSCBHHHHHHHHS-SCCHHHHHHHHHHHHHHHHHHH----HTTCCCSCCCGGGEEESCSSTTCCEEECSTTGGG
T ss_pred EEEEccCCCCHHHHHHhcC-CCCHHHHHHHHHHHHHHHHHHH----HCCeeccCCChhhEEEecCCCcccEEEeccCcce
Confidence 9999999999999987654 4899999999999999999999 6789999999999999754 479999999998
Q ss_pred ccCCCCCceeeeccccCccccCCCccCCCCcCcccchhhHHHHHHHHHhCCCCCCccccCcchHHHHHHh-hCCCchhhh
Q 005040 577 LLGEGEDSVIQTMTMATIGYMAPEYGSEGIVSTKCDVYSYGVLLMETFTEKKPTDEMFTGEMSLRRWVKE-SLPHRLTEV 655 (717)
Q Consensus 577 ~~~~~~~~~~~~~~~~t~~y~aPE~~~~~~~~~~~Dvws~G~il~el~tg~~p~~~~~~~~~~~~~~~~~-~~~~~~~~~ 655 (717)
....... .....+|+.|+|||.+.+ .++.++||||+|+++|+|++|+.||...... .....+.. .....
T Consensus 173 ~~~~~~~---~~~~~~~~~y~aPE~~~~-~~~~~~Di~slG~~l~~l~~g~~p~~~~~~~--~~~~~~~~~~~~~~---- 242 (287)
T 2wei_A 173 CFQQNTK---MKDRIGTAYYIAPEVLRG-TYDEKCDVWSAGVILYILLSGTPPFYGKNEY--DILKRVETGKYAFD---- 242 (287)
T ss_dssp TBCCCSS---CSCHHHHHTTCCHHHHTT-CCCTHHHHHHHHHHHHHHHHSSCSSCCSSHH--HHHHHHHHCCCCCC----
T ss_pred eecCCCc---cccccCcccccChHHhcC-CCCCchhhHhHHHHHHHHHhCCCCCCCCCHH--HHHHHHHcCCCCCC----
Confidence 7654322 123357899999998765 4899999999999999999999999763211 11111111 00000
Q ss_pred ccccchhhhhhhhhhHHHHHHHHHHHhhccCCCCCCCCCHHHHHH
Q 005040 656 VDANLVREEQAFSDKMDCLFSIMDLALDCCMDTPHKRIHMTDAAA 700 (717)
Q Consensus 656 ~~~~~~~~~~~~~~~~~~~~~l~~li~~cl~~~P~~Rpt~~ev~~ 700 (717)
.+....++.++.+++.+||+.||++|||+.|+++
T Consensus 243 -----------~~~~~~~~~~~~~li~~~l~~dp~~Rps~~ell~ 276 (287)
T 2wei_A 243 -----------LPQWRTISDDAKDLIRKMLTFHPSLRITATQCLE 276 (287)
T ss_dssp -----------SGGGTTSCHHHHHHHHHHTCSSGGGSCCHHHHHH
T ss_pred -----------chhhhhcCHHHHHHHHHHcccChhhCcCHHHHhc
Confidence 0111234566889999999999999999999987
No 244
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=100.00 E-value=1.9e-37 Score=349.96 Aligned_cols=164 Identities=26% Similarity=0.307 Sum_probs=102.6
Q ss_pred ccCCCCCCeEEecCccccCCCChhhhcccCCCeEEccCCcCcccCC-ccccCCCCCCeEEccCCCCCCCCcccccCCccc
Q 005040 185 LASLTSLRSLYLQSNKLSSSLPSSLWSLEYILRINLSSNSLKGTLP-SNIQKLNVLIDLDLSRNQLSSDIPSTIGTLKNL 263 (717)
Q Consensus 185 ~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~-~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L 263 (717)
+..+++|++|++++|.+++..+ .+..+++|++|++++|.+++..+ ..+..+++|+.|++++|.+++..|..+..+++|
T Consensus 369 ~~~~~~L~~L~l~~n~l~~~~~-~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L 447 (570)
T 2z63_A 369 DFGTTSLKYLDLSFNGVITMSS-NFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSL 447 (570)
T ss_dssp HHTCSCCCEEECCSCSEEEEEE-EEETCTTCCEEECTTSEEESCTTSCTTTTCTTCCEEECTTSCCEECCTTTTTTCTTC
T ss_pred ccccCccCEEECCCCccccccc-cccccCCCCEEEccCCccccccchhhhhcCCCCCEEeCcCCcccccchhhhhcCCcC
Confidence 3344444444444444443222 25555555555555555554433 356666667777777776666666666777777
Q ss_pred ccccccCcccc-CCCCccccccCccceEeccCCCCCCCCcccccccccccEEEccCCcccccccc-cccccccccccccC
Q 005040 264 ETLSLAGNQFQ-GPIPESVGNLISLESLDFSNNNLSGKIPKSLEALSHLKQFNVSHNRLEGEIPV-KGSFKDFSAQSYFG 341 (717)
Q Consensus 264 ~~L~l~~N~l~-~~~~~~~~~l~~L~~L~L~~N~~~~~~~~~~~~l~~L~~L~l~~N~l~~~~p~-~~~~~~~~~~~~~~ 341 (717)
++|++++|++. +.+|..+..+++|+.|+|++|++++..|..+..+++|+.|++++|++++.+|. ...++.+..+.+.+
T Consensus 448 ~~L~l~~n~l~~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~ 527 (570)
T 2z63_A 448 EVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMASNQLKSVPDGIFDRLTSLQKIWLHT 527 (570)
T ss_dssp CEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCS
T ss_pred cEEECcCCcCccccchhhhhcccCCCEEECCCCccccCChhhhhcccCCCEEeCCCCcCCCCCHHHhhcccCCcEEEecC
Confidence 77777777775 45666777777777777777777766677777777777777777777766553 24455666666677
Q ss_pred CccccCCC
Q 005040 342 NYALCGPP 349 (717)
Q Consensus 342 n~~~c~~~ 349 (717)
|++.|+.+
T Consensus 528 N~~~~~~~ 535 (570)
T 2z63_A 528 NPWDCSCP 535 (570)
T ss_dssp SCBCCCTT
T ss_pred CcccCCCc
Confidence 77666544
No 245
>3rgf_A Cyclin-dependent kinase 8; protein kinase complex, transferase,transcription; HET: BAX; 2.20A {Homo sapiens}
Probab=100.00 E-value=2.1e-38 Score=341.10 Aligned_cols=267 Identities=21% Similarity=0.237 Sum_probs=183.4
Q ss_pred ccCCc-cccccccccEEEEEEEec---CCCeEEEEEechhhHHHHHHHHHHHHHHHhcCCCceeeEeeee--ecCCeeEE
Q 005040 427 DEFNE-CNLLGTGGFGSVYKGTLS---DGTNVAIKIFNLQLERAFRSFDSECEILRNVRHRNLLKILGSC--SNLDFKAL 500 (717)
Q Consensus 427 ~~~~~-~~~lg~G~~g~V~~~~~~---~~~~vavK~~~~~~~~~~~~~~~e~~~l~~l~hpniv~~~~~~--~~~~~~~l 500 (717)
+.|++ .++||+|+||.||+|+++ +++.||+|++..... ...+.+|++++++++||||+++++++ ......++
T Consensus 20 ~~y~~~g~~lG~G~~g~Vy~~~~~~~~~~~~vaiK~~~~~~~--~~~~~~E~~~l~~l~hpniv~~~~~~~~~~~~~~~l 97 (405)
T 3rgf_A 20 DLFEYEGCKVGRGTYGHVYKAKRKDGKDDKDYALKQIEGTGI--SMSACREIALLRELKHPNVISLQKVFLSHADRKVWL 97 (405)
T ss_dssp HHEECSSCCCC-----EEEEEEESSSSCCCCEEEEECSSSSC--CHHHHHHHHHHHHCCCTTBCCCCEEEEETTTTEEEE
T ss_pred hhhhhcCcEeeecCCeEEEEEEEccCCCCeEEEEEEECCCCC--CHHHHHHHHHHHhcCCCCeeeEeeEEecCCCCeEEE
Confidence 45665 458999999999999965 578899999875432 24577899999999999999999999 44778999
Q ss_pred EEEccCCCCHHHHHhhC--------CCCCCHHHHHHHHHHHHHHHHHHhhcCCCCCeEecCCCCCCeee----CCCCcEE
Q 005040 501 VLEFMPNGSLEKWLYSH--------NYFLDILQRLNIMIDVGSALEYLHHCHSSAPIIHCDLKPTNILL----DENMVAH 568 (717)
Q Consensus 501 v~e~~~~g~L~~~l~~~--------~~~~~~~~~~~i~~~i~~~l~~LH~~~~~~~ivH~dlk~~Nill----~~~~~~k 568 (717)
||||++ |+|.+++... ...+++..++.++.|++.||+||| +.+|+||||||+|||+ +.++.+|
T Consensus 98 v~e~~~-~~l~~~~~~~~~~~~~~~~~~l~~~~~~~i~~qi~~al~~LH----~~~ivH~Dlkp~NIll~~~~~~~~~~k 172 (405)
T 3rgf_A 98 LFDYAE-HDLWHIIKFHRASKANKKPVQLPRGMVKSLLYQILDGIHYLH----ANWVLHRDLKPANILVMGEGPERGRVK 172 (405)
T ss_dssp EEECCS-EEHHHHHHHHHHHC-------CCHHHHHHHHHHHHHHHHHHH----HTTCCCCCCCGGGEEECCSSTTTTCEE
T ss_pred EEeCCC-CCHHHHHHHhccccccccccCCCHHHHHHHHHHHHHHHHHHH----hCCEeCCCcCHHHeEEecCCCCCCcEE
Confidence 999996 5888888632 224899999999999999999999 6789999999999999 7788999
Q ss_pred EeeeccccccCCCCCc-eeeeccccCccccCCCccCC-CCcCcccchhhHHHHHHHHHhCCCCCCccccC--------cc
Q 005040 569 VSDFGISKLLGEGEDS-VIQTMTMATIGYMAPEYGSE-GIVSTKCDVYSYGVLLMETFTEKKPTDEMFTG--------EM 638 (717)
Q Consensus 569 l~Dfgl~~~~~~~~~~-~~~~~~~~t~~y~aPE~~~~-~~~~~~~Dvws~G~il~el~tg~~p~~~~~~~--------~~ 638 (717)
|+|||+++........ .......||+.|+|||++.+ ..++.++||||+||++|||++|+.||...... ..
T Consensus 173 l~Dfg~a~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~DiwSlG~il~ell~g~~pf~~~~~~~~~~~~~~~~ 252 (405)
T 3rgf_A 173 IADMGFARLFNSPLKPLADLDPVVVTFWYRAPELLLGARHYTKAIDIWAIGCIFAELLTSEPIFHCRQEDIKTSNPYHHD 252 (405)
T ss_dssp ECCTTCCC----------------CCCTTCCHHHHTTCCSCCHHHHHHHHHHHHHHHHHSSCTTCCCC------CCCCHH
T ss_pred EEECCCceecCCCCcccccCCCceecCcccCchhhcCCCcccchhhhHHHHHHHHHHHhCCCCCCCccccccccccchHH
Confidence 9999999876533211 22334578999999998877 45899999999999999999999999753221 01
Q ss_pred hHHHHHHhhC-CC--chhhhccc--------cchhh-hhhhh-------hhHHHHHHHHHHHhhccCCCCCCCCCHHHHH
Q 005040 639 SLRRWVKESL-PH--RLTEVVDA--------NLVRE-EQAFS-------DKMDCLFSIMDLALDCCMDTPHKRIHMTDAA 699 (717)
Q Consensus 639 ~~~~~~~~~~-~~--~~~~~~~~--------~~~~~-~~~~~-------~~~~~~~~l~~li~~cl~~~P~~Rpt~~ev~ 699 (717)
.+........ +. .+..+... .+... ..... .....+.++.+|+.+||+.||++|||++|++
T Consensus 253 ~l~~i~~~~g~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ll~~~L~~dP~~R~ta~e~L 332 (405)
T 3rgf_A 253 QLDRIFNVMGFPADKDWEDIKKMPEHSTLMKDFRRNTYTNCSLIKYMEKHKVKPDSKAFHLLQKLLTMDPIKRITSEQAM 332 (405)
T ss_dssp HHHHHHHHHCCCCTTTCGGGGGSTTHHHHHHHCCGGGGTTCCHHHHHHTTTCCTTSHHHHHHHHHSCSSGGGSCCHHHHH
T ss_pred HHHHHHHhhCCCChhhcchhhcCcchhhhhhhccccCCCcchhhhhHhhcCCCCCHHHHHHHHHHccCCcccCCCHHHHh
Confidence 1222221111 10 01111000 00000 00000 0001145688999999999999999999998
Q ss_pred H
Q 005040 700 A 700 (717)
Q Consensus 700 ~ 700 (717)
+
T Consensus 333 ~ 333 (405)
T 3rgf_A 333 Q 333 (405)
T ss_dssp T
T ss_pred c
Confidence 6
No 246
>2vx3_A Dual specificity tyrosine-phosphorylation- regula kinase 1A; serine/threonine-protein kinase, minibrain homolog, nucleotide-binding, transferase; HET: PTR D15 P6G; 2.40A {Homo sapiens} PDB: 2wo6_A* 3anq_A* 3anr_A*
Probab=100.00 E-value=1.4e-37 Score=332.07 Aligned_cols=200 Identities=26% Similarity=0.305 Sum_probs=171.8
Q ss_pred HhccCCccccccccccEEEEEEEec-CCCeEEEEEechhhHHHHHHHHHHHHHHHhcC-CC-----ceeeEeeeeecCCe
Q 005040 425 ATDEFNECNLLGTGGFGSVYKGTLS-DGTNVAIKIFNLQLERAFRSFDSECEILRNVR-HR-----NLLKILGSCSNLDF 497 (717)
Q Consensus 425 ~~~~~~~~~~lg~G~~g~V~~~~~~-~~~~vavK~~~~~~~~~~~~~~~e~~~l~~l~-hp-----niv~~~~~~~~~~~ 497 (717)
..++|++.+.||+|+||.||+|... +++.||||++.... .....+..|+++++.++ |+ +|+++++++...+.
T Consensus 52 ~~~~y~~~~~lG~G~~g~V~~~~~~~~~~~vaiK~~~~~~-~~~~~~~~e~~~l~~l~~~~~~~~~~iv~~~~~~~~~~~ 130 (382)
T 2vx3_A 52 WMDRYEIDSLIGKGSFGQVVKAYDRVEQEWVAIKIIKNKK-AFLNQAQIEVRLLELMNKHDTEMKYYIVHLKRHFMFRNH 130 (382)
T ss_dssp ETTTEEEEEEEEEETTEEEEEEEETTTTEEEEEEEECSSH-HHHHHHHHHHHHHHHHHHCSSGGGGGBCCEEEEEEETTE
T ss_pred eeeeEEEEEEEeecCCEEEEEEEEcCCCcEEEEEEEeccH-HHHHHHHHHHHHHHHHHhcccccceeEEEeeeeeccCCc
Confidence 3578999999999999999999876 78899999997543 33456777889988884 54 49999999999999
Q ss_pred eEEEEEccCCCCHHHHHhhCC-CCCCHHHHHHHHHHHHHHHHHHhhcCCCCCeEecCCCCCCeeeC--CCCcEEEeeecc
Q 005040 498 KALVLEFMPNGSLEKWLYSHN-YFLDILQRLNIMIDVGSALEYLHHCHSSAPIIHCDLKPTNILLD--ENMVAHVSDFGI 574 (717)
Q Consensus 498 ~~lv~e~~~~g~L~~~l~~~~-~~~~~~~~~~i~~~i~~~l~~LH~~~~~~~ivH~dlk~~Nill~--~~~~~kl~Dfgl 574 (717)
.++||||++ |+|.+++.... ..+++..+..++.|++.||.|||.. ..+|+||||||+|||++ .++.+||+|||+
T Consensus 131 ~~lv~e~~~-~~L~~~l~~~~~~~~~~~~~~~i~~qi~~al~~lH~~--~~~ivHrDlkp~NIll~~~~~~~~kL~DFG~ 207 (382)
T 2vx3_A 131 LCLVFEMLS-YNLYDLLRNTNFRGVSLNLTRKFAQQMCTALLFLATP--ELSIIHCDLKPENILLCNPKRSAIKIVDFGS 207 (382)
T ss_dssp EEEEEECCC-CBHHHHHHHTTTSCCCHHHHHHHHHHHHHHHHHHTST--TTCEECCCCSGGGEEESSTTSCCEEECCCTT
T ss_pred eEEEEecCC-CCHHHHHhhcCcCCCCHHHHHHHHHHHHHHHHHhccC--CCCEEcCCCCcccEEEecCCCCcEEEEeccC
Confidence 999999996 59999998653 4589999999999999999999931 36899999999999995 578899999999
Q ss_pred ccccCCCCCceeeeccccCccccCCCccCCCCcCcccchhhHHHHHHHHHhCCCCCCcc
Q 005040 575 SKLLGEGEDSVIQTMTMATIGYMAPEYGSEGIVSTKCDVYSYGVLLMETFTEKKPTDEM 633 (717)
Q Consensus 575 ~~~~~~~~~~~~~~~~~~t~~y~aPE~~~~~~~~~~~Dvws~G~il~el~tg~~p~~~~ 633 (717)
++...... ....||+.|+|||++.+..++.++|||||||++|||++|+.||...
T Consensus 208 a~~~~~~~-----~~~~~t~~y~aPE~~~~~~~~~~~DiwSlG~il~elltg~~pf~~~ 261 (382)
T 2vx3_A 208 SCQLGQRI-----YQYIQSRFYRSPEVLLGMPYDLAIDMWSLGCILVEMHTGEPLFSGA 261 (382)
T ss_dssp CEETTCCC-----CSSCSCGGGCCHHHHTTCCCCTHHHHHHHHHHHHHHHHSSCSSCCS
T ss_pred ceeccccc-----ccccCCccccChHHHcCCCCCcHHHHHHHHHHHHHHHhCCCCCCCC
Confidence 98764322 3356899999999999999999999999999999999999999763
No 247
>1j1b_A Glycogen synthase kinase-3 beta; complex, TAU, AMPPNP, transferase; HET: ANP; 1.80A {Homo sapiens} SCOP: d.144.1.7 PDB: 1i09_A* 1j1c_A* 2jld_A* 3m1s_A* 3pup_A* 3du8_A* 1pyx_A* 1q41_A* 1q3w_A* 1q3d_A* 1q4l_A* 3q3b_A* 1q5k_A* 3i4b_A* 3l1s_A* 1r0e_A* 3zrk_A* 3zrl_A* 3zrm_A* 4dit_A* ...
Probab=100.00 E-value=2.9e-38 Score=340.91 Aligned_cols=261 Identities=25% Similarity=0.286 Sum_probs=194.0
Q ss_pred ccCCccccccccccEEEEEEEec-CCCeEEEEEechhhHHHHHHHHHHHHHHHhcCCCceeeEeeeeec------CCeeE
Q 005040 427 DEFNECNLLGTGGFGSVYKGTLS-DGTNVAIKIFNLQLERAFRSFDSECEILRNVRHRNLLKILGSCSN------LDFKA 499 (717)
Q Consensus 427 ~~~~~~~~lg~G~~g~V~~~~~~-~~~~vavK~~~~~~~~~~~~~~~e~~~l~~l~hpniv~~~~~~~~------~~~~~ 499 (717)
.+|+..+.||+|+||.||+|++. +++.||||++.... +...+|++++++++||||+++++++.. ....+
T Consensus 54 ~~y~~~~~lG~G~fg~Vy~~~~~~~~~~vaiK~~~~~~----~~~~~E~~il~~l~hpniv~l~~~~~~~~~~~~~~~~~ 129 (420)
T 1j1b_A 54 VSYTDTKVIGNGSFGVVYQAKLCDSGELVAIKKVLQDK----RFKNRELQIMRKLDHCNIVRLRYFFYSSGEKKDEVYLN 129 (420)
T ss_dssp EEEEEEEEEEECSSEEEEEEEETTTCCEEEEEEEECCT----TSCCHHHHHHHTCCCTTBCCEEEEEEEEETTTTEEEEE
T ss_pred ceEEeeeEEeeCCCEEEEEEEECCCCcEEEEEEecccc----hhHHHHHHHHHHcCCCCccceeeEEeccCCCCcceeEE
Confidence 57899999999999999999985 69999999986442 223469999999999999999998843 22467
Q ss_pred EEEEccCCCCHHHHHh---hCCCCCCHHHHHHHHHHHHHHHHHHhhcCCCCCeEecCCCCCCeeeCCC-CcEEEeeeccc
Q 005040 500 LVLEFMPNGSLEKWLY---SHNYFLDILQRLNIMIDVGSALEYLHHCHSSAPIIHCDLKPTNILLDEN-MVAHVSDFGIS 575 (717)
Q Consensus 500 lv~e~~~~g~L~~~l~---~~~~~~~~~~~~~i~~~i~~~l~~LH~~~~~~~ivH~dlk~~Nill~~~-~~~kl~Dfgl~ 575 (717)
+||||+++ ++.+.+. .....+++..+..++.|+++||.||| +.+|+||||||+|||++.+ +.+||+|||++
T Consensus 130 lv~e~~~~-~l~~~~~~~~~~~~~l~~~~~~~~~~qi~~aL~~LH----~~~ivHrDlkp~NILl~~~~~~~kl~DFG~a 204 (420)
T 1j1b_A 130 LVLDYVPE-TVYRVARHYSRAKQTLPVIYVKLYMYQLFRSLAYIH----SFGICHRDIKPQNLLLDPDTAVLKLCDFGSA 204 (420)
T ss_dssp EEEECCCE-EHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHHH----TTTEECSCCSGGGEEEETTTTEEEECCCTTC
T ss_pred eehhcccc-cHHHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHH----HCCccccCCChhhEEEeCCCCeEEeccchhh
Confidence 99999975 6776665 34556999999999999999999999 7899999999999999965 67899999999
Q ss_pred cccCCCCCceeeeccccCccccCCCccCCC-CcCcccchhhHHHHHHHHHhCCCCCCccccCcchHHHHHHhhCCCc---
Q 005040 576 KLLGEGEDSVIQTMTMATIGYMAPEYGSEG-IVSTKCDVYSYGVLLMETFTEKKPTDEMFTGEMSLRRWVKESLPHR--- 651 (717)
Q Consensus 576 ~~~~~~~~~~~~~~~~~t~~y~aPE~~~~~-~~~~~~Dvws~G~il~el~tg~~p~~~~~~~~~~~~~~~~~~~~~~--- 651 (717)
+.+..... .....+|+.|+|||++.+. .++.++|||||||++|||++|+.||.+... ...+...+.......
T Consensus 205 ~~~~~~~~---~~~~~~t~~y~aPE~~~~~~~~~~~~DiwSlG~il~ell~G~~pf~~~~~-~~~l~~i~~~lg~p~~~~ 280 (420)
T 1j1b_A 205 KQLVRGEP---NVSYICSRYYRAPELIFGATDYTSSIDVWSAGCVLAELLLGQPIFPGDSG-VDQLVEIIKVLGTPTREQ 280 (420)
T ss_dssp EECCTTCC---CCSCCSCTTSCCHHHHTTCSSCCTHHHHHHHHHHHHHHHHSSCSSCCSSH-HHHHHHHHHHHCSCCHHH
T ss_pred hhcccCCC---ceeeeeCCCcCCHHHHcCCCCCCchhhhHHHHHHHHHHHhCCCCCCCCCH-HHHHHHHHHHhCCCCHHH
Confidence 87644322 2335689999999988664 799999999999999999999999976322 222333322211110
Q ss_pred hhhh-------ccccchhhhhhhhhhHHHHHHHHHHHhhccCCCCCCCCCHHHHHH
Q 005040 652 LTEV-------VDANLVREEQAFSDKMDCLFSIMDLALDCCMDTPHKRIHMTDAAA 700 (717)
Q Consensus 652 ~~~~-------~~~~~~~~~~~~~~~~~~~~~l~~li~~cl~~~P~~Rpt~~ev~~ 700 (717)
+... ..+.+....-........+.++.+|+.+||..||++|||+.|+++
T Consensus 281 ~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~Li~~~L~~dP~~R~t~~e~l~ 336 (420)
T 1j1b_A 281 IREMNPNYTEFKFPQIKAHPWTKVFRPRTPPEAIALCSRLLEYTPTARLTPLEACA 336 (420)
T ss_dssp HHHHCSCCCCCCCCCCCCCCHHHHSCTTSCHHHHHHHHHHSCSSGGGSCCHHHHHT
T ss_pred HHhhChhhhhhccCccCCCCHHHhcCCCCCHHHHHHHHHhccCChhHCCCHHHHhC
Confidence 0000 000000000000001123567899999999999999999999985
No 248
>4e7w_A Glycogen synthase kinase 3; GSK3, PTyr195, transferase; HET: PTR; 3.30A {Ustilago maydis}
Probab=100.00 E-value=2e-38 Score=339.30 Aligned_cols=262 Identities=24% Similarity=0.299 Sum_probs=193.5
Q ss_pred hccCCccccccccccEEEEEEEecCCCeEEEEEechhhHHHHHHHHHHHHHHHhcCCCceeeEeeeeecCC------eeE
Q 005040 426 TDEFNECNLLGTGGFGSVYKGTLSDGTNVAIKIFNLQLERAFRSFDSECEILRNVRHRNLLKILGSCSNLD------FKA 499 (717)
Q Consensus 426 ~~~~~~~~~lg~G~~g~V~~~~~~~~~~vavK~~~~~~~~~~~~~~~e~~~l~~l~hpniv~~~~~~~~~~------~~~ 499 (717)
..+|+..+.||+|+||.||+|+...+..||+|++..... ...+|+++++.++||||+++++++...+ ..+
T Consensus 39 ~~~Y~~~~~lG~G~~g~V~~a~~~~~~~~aikk~~~~~~----~~~~E~~il~~l~h~niv~l~~~~~~~~~~~~~~~~~ 114 (394)
T 4e7w_A 39 EIAYTNCKVIGNGSFGVVFQAKLVESDEVAIKKVLQDKR----FKNRELQIMRIVKHPNVVDLKAFFYSNGDKKDEVFLN 114 (394)
T ss_dssp EEEEEEEEEEEEETTEEEEEEEETTTEEEEEEEEECCTT----SCCHHHHHHHTCCCTTBCCEEEEEEEESSSSSCEEEE
T ss_pred cceEEEeEEEeeCCCeEEEEEEECCCCeEEEEEEecCcc----hHHHHHHHHHhCCCCCcceEEEEEEecCCCCCceEEE
Confidence 357999999999999999999987777799998754322 2235999999999999999999984432 378
Q ss_pred EEEEccCCCCHHHHHh---hCCCCCCHHHHHHHHHHHHHHHHHHhhcCCCCCeEecCCCCCCeeeC-CCCcEEEeeeccc
Q 005040 500 LVLEFMPNGSLEKWLY---SHNYFLDILQRLNIMIDVGSALEYLHHCHSSAPIIHCDLKPTNILLD-ENMVAHVSDFGIS 575 (717)
Q Consensus 500 lv~e~~~~g~L~~~l~---~~~~~~~~~~~~~i~~~i~~~l~~LH~~~~~~~ivH~dlk~~Nill~-~~~~~kl~Dfgl~ 575 (717)
+||||++++ +.+.+. .....+++..+..++.|+++||+||| +.+|+||||||+||+++ .++.+||+|||++
T Consensus 115 lv~e~~~~~-l~~~~~~~~~~~~~~~~~~~~~~~~qi~~aL~~LH----~~~ivHrDlkp~Nill~~~~~~~kL~DFG~a 189 (394)
T 4e7w_A 115 LVLEYVPET-VYRASRHYAKLKQTMPMLLIKLYMYQLLRSLAYIH----SIGICHRDIKPQNLLLDPPSGVLKLIDFGSA 189 (394)
T ss_dssp EEEECCSEE-HHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHHH----HTTEECSCCSGGGEEEETTTTEEEECCCTTC
T ss_pred EEeeccCcc-HHHHHHHHHhhcCCCCHHHHHHHHHHHHHHHHHHH----HCCccCCCCCHHHEEEcCCCCcEEEeeCCCc
Confidence 999999864 444333 23456899999999999999999999 67899999999999999 7999999999999
Q ss_pred cccCCCCCceeeeccccCccccCCCccCCC-CcCcccchhhHHHHHHHHHhCCCCCCccccCcchHHHHHHhhCCCchhh
Q 005040 576 KLLGEGEDSVIQTMTMATIGYMAPEYGSEG-IVSTKCDVYSYGVLLMETFTEKKPTDEMFTGEMSLRRWVKESLPHRLTE 654 (717)
Q Consensus 576 ~~~~~~~~~~~~~~~~~t~~y~aPE~~~~~-~~~~~~Dvws~G~il~el~tg~~p~~~~~~~~~~~~~~~~~~~~~~~~~ 654 (717)
+....... .....+|+.|+|||++.+. .++.++||||+||++|||++|+.||.+... ...+...+..........
T Consensus 190 ~~~~~~~~---~~~~~~t~~y~aPE~~~~~~~~~~~~DiwSlG~il~ell~g~~pf~~~~~-~~~l~~i~~~~g~p~~~~ 265 (394)
T 4e7w_A 190 KILIAGEP---NVSYICSRYYRAPELIFGATNYTTNIDIWSTGCVMAELMQGQPLFPGESG-IDQLVEIIKVLGTPSREQ 265 (394)
T ss_dssp EECCTTCC---CCSSCSCGGGCCHHHHTTCSSCCTHHHHHHHHHHHHHHHHSSCSSCCSSH-HHHHHHHHHHHCCCCHHH
T ss_pred ccccCCCC---CcccccCcCccCHHHHcCCCCCCcHHHHHHHHHHHHHHHhCCCCCCCCCH-HHHHHHHHHHhCCCCHHH
Confidence 87644332 2344689999999987654 589999999999999999999999976322 122222222111111000
Q ss_pred --hccccc-----h---hhhhhhhhhHHHHHHHHHHHhhccCCCCCCCCCHHHHHH
Q 005040 655 --VVDANL-----V---REEQAFSDKMDCLFSIMDLALDCCMDTPHKRIHMTDAAA 700 (717)
Q Consensus 655 --~~~~~~-----~---~~~~~~~~~~~~~~~l~~li~~cl~~~P~~Rpt~~ev~~ 700 (717)
...+.. . ...........++.++.+++.+||+.||++|||+.|+++
T Consensus 266 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~R~t~~e~l~ 321 (394)
T 4e7w_A 266 IKTMNPNYMEHKFPQIRPHPFSKVFRPRTPPDAIDLISRLLEYTPSARLTAIEALC 321 (394)
T ss_dssp HHHHCGGGSSSCCCCCCCCCHHHHSCTTCCHHHHHHHHHHCCSSGGGSCCHHHHHT
T ss_pred HHhhChhhhhhccccccCCcHHHhccccCCHHHHHHHHHHhCCChhhCCCHHHHhc
Confidence 000000 0 000000001124567899999999999999999999986
No 249
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=100.00 E-value=2.8e-37 Score=356.51 Aligned_cols=324 Identities=22% Similarity=0.246 Sum_probs=231.5
Q ss_pred CCccccCCCCCcEEECCCCccee-----------------cCCcCCC--CCCCCCEEEcccccccCccCCcccccccccc
Q 005040 4 IPNSITNATKLIGLDLGLNSFSG-----------------HIPNTFG--NLRHLSVLSLMMNNLTTESSSADQWSFLSSL 64 (717)
Q Consensus 4 iP~~~~~l~~L~~L~L~~n~i~~-----------------~~~~~~~--~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~l 64 (717)
||.+|+++++|++|+|++|.|++ .+|..++ ++++|++|+|++|++.... +..|
T Consensus 440 IP~~l~~L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~iP~~l~f~~L~~L~~L~Ls~N~l~~~i--------P~~l 511 (876)
T 4ecn_A 440 ISKAIQRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTDVELYNCPNMTQL--------PDFL 511 (876)
T ss_dssp ECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEESCTTCCSC--------CGGG
T ss_pred hhHHHhcCCCCCEEECcCCcCCCCcccccccccccccccccCChhhhhccCCCCCEEECcCCCCCccC--------hHHH
Confidence 89999999999999999999997 3888877 9999999999999877644 3448
Q ss_pred cCccCCcEEeccCCC-Ccc-cCCcchhccc------cccceeeecCCcceecCCc--cccCCCCCcEEEccCCCCcccCC
Q 005040 65 TNCRNLANLALASNP-LGG-ILPPLIGNFS------ASLQNIYAFECKLGGSIPK--EIGNLRGLIVLSLGFNDLNGTIP 134 (717)
Q Consensus 65 ~~l~~L~~L~L~~N~-l~~-~~~~~~~~l~------~~L~~L~l~~n~l~~~~~~--~~~~l~~L~~L~L~~n~l~~~~~ 134 (717)
.++++|++|+|++|+ +++ .+|..+..+. ++|++|+|++|++. .+|. .|.++++|++|+|++|+++ .+|
T Consensus 512 ~~L~~L~~L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L~-~ip~~~~l~~L~~L~~L~Ls~N~l~-~lp 589 (876)
T 4ecn_A 512 YDLPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLE-EFPASASLQKMVKLGLLDCVHNKVR-HLE 589 (876)
T ss_dssp GGCSSCCEEECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSCCC-BCCCHHHHTTCTTCCEEECTTSCCC-BCC
T ss_pred hCCCCCCEEECcCCCCcccccchHHHHhhhhcccccCCccEEEeeCCcCC-ccCChhhhhcCCCCCEEECCCCCcc-cch
Confidence 889999999999998 887 7787777763 37999999999998 7787 8899999999999999988 666
Q ss_pred ccccccCCCCEEeccCCcccccCCccccCCCC-CCEEeccCCcCcccCCccccCCCC--CCeEEecCccccCCCChhh--
Q 005040 135 TSIGTLQQLQGFYVPENNLQGYVPHDLCHLER-LNILNLSGNKLSGAIPQCLASLTS--LRSLYLQSNKLSSSLPSSL-- 209 (717)
Q Consensus 135 ~~~~~l~~L~~L~l~~n~i~~~~~~~~~~l~~-L~~L~L~~n~l~~~~~~~~~~l~~--L~~L~L~~N~l~~~~~~~~-- 209 (717)
.|..+++|+.|+|++|+++ .+|..+.++++ |+.|+|++|.++ .+|..+..++. |+.|+|++|++++.+|...
T Consensus 590 -~~~~L~~L~~L~Ls~N~l~-~lp~~l~~l~~~L~~L~Ls~N~L~-~lp~~~~~~~~~~L~~L~Ls~N~l~g~ip~l~~~ 666 (876)
T 4ecn_A 590 -AFGTNVKLTDLKLDYNQIE-EIPEDFCAFTDQVEGLGFSHNKLK-YIPNIFNAKSVYVMGSVDFSYNKIGSEGRNISCS 666 (876)
T ss_dssp -CCCTTSEESEEECCSSCCS-CCCTTSCEECTTCCEEECCSSCCC-SCCSCCCTTCSSCEEEEECCSSCTTTTSSSCSSC
T ss_pred -hhcCCCcceEEECcCCccc-cchHHHhhccccCCEEECcCCCCC-cCchhhhccccCCCCEEECcCCcCCCccccchhh
Confidence 8888899999999999988 67777888888 899999988888 56766666543 7777777777776544322
Q ss_pred -h--cccCCCeEEccCCcCcccCCccccCCCCCCeEEccCCCCCCCCccc-ccC-------CcccccccccCccccCCCC
Q 005040 210 -W--SLEYILRINLSSNSLKGTLPSNIQKLNVLIDLDLSRNQLSSDIPST-IGT-------LKNLETLSLAGNQFQGPIP 278 (717)
Q Consensus 210 -~--~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~-~~~-------l~~L~~L~l~~N~l~~~~~ 278 (717)
. .+++|+.|+|++|.++...+..+..+++|+.|+|++|.|+. +|.. +.. +++|+.|+|++|+++ .+|
T Consensus 667 l~~~~~~~L~~L~Ls~N~L~~lp~~~~~~l~~L~~L~Ls~N~L~~-ip~~~~~~~~~~l~nl~~L~~L~Ls~N~L~-~lp 744 (876)
T 4ecn_A 667 MDDYKGINASTVTLSYNEIQKFPTELFATGSPISTIILSNNLMTS-IPENSLKPKDGNYKNTYLLTTIDLRFNKLT-SLS 744 (876)
T ss_dssp TTTCCCCCEEEEECCSSCCCSCCHHHHHTTCCCSEEECCSCCCSC-CCTTSSSCTTSCCTTGGGCCEEECCSSCCC-CCC
T ss_pred hccccCCCcCEEEccCCcCCccCHHHHccCCCCCEEECCCCcCCc-cChHHhccccccccccCCccEEECCCCCCc-cch
Confidence 1 23366666666666663322233466666666666666663 3332 221 226666666666666 455
Q ss_pred cccc--ccCccceEeccCCCCCCCCcccccccccccEEEccC------Ccccccccc-cccccccccccccCCc
Q 005040 279 ESVG--NLISLESLDFSNNNLSGKIPKSLEALSHLKQFNVSH------NRLEGEIPV-KGSFKDFSAQSYFGNY 343 (717)
Q Consensus 279 ~~~~--~l~~L~~L~L~~N~~~~~~~~~~~~l~~L~~L~l~~------N~l~~~~p~-~~~~~~~~~~~~~~n~ 343 (717)
..+. .+++|+.|+|++|++++ +|..+..+++|+.|+|++ |.+.+.+|. ...++.+..+.+.+|.
T Consensus 745 ~~l~~~~l~~L~~L~Ls~N~L~~-lp~~l~~L~~L~~L~Ls~N~~ls~N~l~~~ip~~l~~L~~L~~L~Ls~N~ 817 (876)
T 4ecn_A 745 DDFRATTLPYLSNMDVSYNCFSS-FPTQPLNSSQLKAFGIRHQRDAEGNRILRQWPTGITTCPSLIQLQIGSND 817 (876)
T ss_dssp GGGSTTTCTTCCEEECCSSCCSS-CCCGGGGCTTCCEEECCCCBCTTCCBCCCCCCTTGGGCSSCCEEECCSSC
T ss_pred HHhhhccCCCcCEEEeCCCCCCc-cchhhhcCCCCCEEECCCCCCcccccccccChHHHhcCCCCCEEECCCCC
Confidence 5554 66666666666666665 566666666666666654 555555553 2344555555555544
No 250
>1blx_A Cyclin-dependent kinase 6; inhibitor protein, cyclin-dependent kinase, cell cycle control, alpha/beta, complex (inhibitor protein/kinase); 1.90A {Homo sapiens} SCOP: d.144.1.7 PDB: 1bi7_A 1bi8_A 1g3n_A 2f2c_B* 1jow_B* 2euf_B* 1xo2_B* 3nup_A* 3nux_A* 2w9z_B 2w99_B 2w96_B 2w9f_B
Probab=100.00 E-value=5e-38 Score=328.39 Aligned_cols=267 Identities=24% Similarity=0.303 Sum_probs=200.2
Q ss_pred HhccCCccccccccccEEEEEEEe--cCCCeEEEEEechhhH--HHHHHHHHHHHHHHhc---CCCceeeEeeeee----
Q 005040 425 ATDEFNECNLLGTGGFGSVYKGTL--SDGTNVAIKIFNLQLE--RAFRSFDSECEILRNV---RHRNLLKILGSCS---- 493 (717)
Q Consensus 425 ~~~~~~~~~~lg~G~~g~V~~~~~--~~~~~vavK~~~~~~~--~~~~~~~~e~~~l~~l---~hpniv~~~~~~~---- 493 (717)
+.++|++.+.||+|+||.||+|.. .+++.||+|++..... .....+.+|+.+++.+ +||||+++++++.
T Consensus 9 ~~~~y~~~~~lg~G~~g~V~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~e~~~l~~l~~~~h~~i~~~~~~~~~~~~ 88 (326)
T 1blx_A 9 ADQQYECVAEIGEGAYGKVFKARDLKNGGRFVALKRVRVQTGEEGMPLSTIREVAVLRHLETFEHPNVVRLFDVCTVSRT 88 (326)
T ss_dssp GGGTEEEEEEEEEETTEEEEEEEETTTTTEEEEEEEEEEEBCTTSCBCTHHHHHHHHHHHHHTCCTTBCCEEEEEEEEEC
T ss_pred chhceeeeeeecccccEEEEEEEecCCCCEEEEEEEeccCcccccCCchhhHHHHHHHhhhccCCCCeEeeeeeeeeccc
Confidence 457899999999999999999997 3688999999864431 1123455677777766 8999999999986
Q ss_pred -cCCeeEEEEEccCCCCHHHHHhhCC-CCCCHHHHHHHHHHHHHHHHHHhhcCCCCCeEecCCCCCCeeeCCCCcEEEee
Q 005040 494 -NLDFKALVLEFMPNGSLEKWLYSHN-YFLDILQRLNIMIDVGSALEYLHHCHSSAPIIHCDLKPTNILLDENMVAHVSD 571 (717)
Q Consensus 494 -~~~~~~lv~e~~~~g~L~~~l~~~~-~~~~~~~~~~i~~~i~~~l~~LH~~~~~~~ivH~dlk~~Nill~~~~~~kl~D 571 (717)
.....++||||++ |+|.+++.... ..+++..+..++.|++.||.||| +.+|+||||||+||+++.++.+||+|
T Consensus 89 ~~~~~~~lv~e~~~-~~L~~~l~~~~~~~~~~~~~~~~~~qi~~~l~~lH----~~gi~H~dlkp~Nili~~~~~~kl~D 163 (326)
T 1blx_A 89 DRETKLTLVFEHVD-QDLTTYLDKVPEPGVPTETIKDMMFQLLRGLDFLH----SHRVVHRDLKPQNILVTSSGQIKLAD 163 (326)
T ss_dssp SSEEEEEEEEECCS-CBHHHHHHHSCTTCSCHHHHHHHHHHHHHHHHHHH----HTTCCCCCCCGGGEEECTTCCEEECS
T ss_pred CCCceEEEEEecCC-CCHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHH----HCCceeccCCHHHeEEcCCCCEEEec
Confidence 5667899999997 69999998653 34899999999999999999999 67899999999999999999999999
Q ss_pred eccccccCCCCCceeeeccccCccccCCCccCCCCcCcccchhhHHHHHHHHHhCCCCCCccccCcchHHHHHHhhC-CC
Q 005040 572 FGISKLLGEGEDSVIQTMTMATIGYMAPEYGSEGIVSTKCDVYSYGVLLMETFTEKKPTDEMFTGEMSLRRWVKESL-PH 650 (717)
Q Consensus 572 fgl~~~~~~~~~~~~~~~~~~t~~y~aPE~~~~~~~~~~~Dvws~G~il~el~tg~~p~~~~~~~~~~~~~~~~~~~-~~ 650 (717)
||++....... ......+|+.|+|||++.+..++.++||||||+++|||++|+.||...... ........... +.
T Consensus 164 fg~~~~~~~~~---~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~g~~pf~~~~~~-~~~~~i~~~~~~~~ 239 (326)
T 1blx_A 164 FGLARIYSFQM---ALTSVVVTLWYRAPEVLLQSSYATPVDLWSVGCIFAEMFRRKPLFRGSSDV-DQLGKILDVIGLPG 239 (326)
T ss_dssp CCSCCCCCGGG---GGCCCCCCCTTCCHHHHTTCCCCTHHHHHHHHHHHHHHHHSSCSCCCSSHH-HHHHHHHHHHCCCC
T ss_pred CcccccccCCC---CccccccccceeCHHHHhcCCCCcchhHHHHHHHHHHHHcCCCCCCCCCHH-HHHHHHHHHcCCCC
Confidence 99998654221 223456899999999999999999999999999999999999999763221 11112111110 00
Q ss_pred c--hhhhcc---ccchh--hhhhhhhhHHHHHHHHHHHhhccCCCCCCCCCHHHHHH
Q 005040 651 R--LTEVVD---ANLVR--EEQAFSDKMDCLFSIMDLALDCCMDTPHKRIHMTDAAA 700 (717)
Q Consensus 651 ~--~~~~~~---~~~~~--~~~~~~~~~~~~~~l~~li~~cl~~~P~~Rpt~~ev~~ 700 (717)
. +..... ..+.. ..........++..+.+++.+||+.||++|||+.|+++
T Consensus 240 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~Rpt~~e~l~ 296 (326)
T 1blx_A 240 EEDWPRDVALPRQAFHSKSAQPIEKFVTDIDELGKDLLLKCLTFNPAKRISAYSALS 296 (326)
T ss_dssp GGGSCTTCSSCGGGSCCCCCCCGGGTCCSCCHHHHHHHHHHSCSSTTTSCCHHHHHT
T ss_pred cccCccccccchhhhcccCcchhhhccccCCHHHHHHHHHHcCCCcccCCCHHHHhc
Confidence 0 000000 00000 00000011234567889999999999999999999985
No 251
>2dyl_A Dual specificity mitogen-activated protein kinase kinase 7; MKK7, activated mutant, ATP-binding, structural genomics, NPPSFA; 2.45A {Homo sapiens}
Probab=100.00 E-value=6.4e-38 Score=326.32 Aligned_cols=252 Identities=23% Similarity=0.287 Sum_probs=182.5
Q ss_pred hccCCccccccccccEEEEEEEec-CCCeEEEEEechhh--HHHHHHHHHHHHHHHhcCCCceeeEeeeeecCCeeEEEE
Q 005040 426 TDEFNECNLLGTGGFGSVYKGTLS-DGTNVAIKIFNLQL--ERAFRSFDSECEILRNVRHRNLLKILGSCSNLDFKALVL 502 (717)
Q Consensus 426 ~~~~~~~~~lg~G~~g~V~~~~~~-~~~~vavK~~~~~~--~~~~~~~~~e~~~l~~l~hpniv~~~~~~~~~~~~~lv~ 502 (717)
.++|+..+.||+|+||.||+|... +|+.||||++.... ....+.+.++..+++.++||||+++++++.+.+..++||
T Consensus 24 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~~~~~~~~~h~~i~~~~~~~~~~~~~~lv~ 103 (318)
T 2dyl_A 24 INDLENLGEMGSGTCGQVWKMRFRKTGHVIAVKQMRRSGNKEENKRILMDLDVVLKSHDCPYIVQCFGTFITNTDVFIAM 103 (318)
T ss_dssp GGGEEEEEEC------CEEEEEETTTCCEEEEEEEETTSCHHHHHHHHHHHHHHHHTTTCTTBCCEEEEEECSSEEEEEE
T ss_pred hccccccceeeecCCeeEEEEEEecCCeEEEEEEecccccchHHHHHHHHHHHHHHhcCCCceeeEEEEEecCCcEEEEE
Confidence 368899999999999999999975 79999999997543 223344555666788889999999999999999999999
Q ss_pred EccCCCCHHHHHhhCCCCCCHHHHHHHHHHHHHHHHHHhhcCCCCCeEecCCCCCCeeeCCCCcEEEeeeccccccCCCC
Q 005040 503 EFMPNGSLEKWLYSHNYFLDILQRLNIMIDVGSALEYLHHCHSSAPIIHCDLKPTNILLDENMVAHVSDFGISKLLGEGE 582 (717)
Q Consensus 503 e~~~~g~L~~~l~~~~~~~~~~~~~~i~~~i~~~l~~LH~~~~~~~ivH~dlk~~Nill~~~~~~kl~Dfgl~~~~~~~~ 582 (717)
||+ ++.+..+.......+++..+..++.|+++||.|||+ ..+|+||||||+||+++.++.+||+|||++.......
T Consensus 104 e~~-~~~~~~l~~~~~~~~~~~~~~~~~~~i~~~l~~lH~---~~~i~H~dlkp~Nil~~~~~~~kl~dfg~~~~~~~~~ 179 (318)
T 2dyl_A 104 ELM-GTCAEKLKKRMQGPIPERILGKMTVAIVKALYYLKE---KHGVIHRDVKPSNILLDERGQIKLCDFGISGRLVDDK 179 (318)
T ss_dssp CCC-SEEHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHH---HHCCCCCCCCGGGEEECTTSCEEECCCTTC-------
T ss_pred ecc-CCcHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHHh---hCCEEeCCCCHHHEEECCCCCEEEEECCCchhccCCc
Confidence 999 556666665545568999999999999999999993 1389999999999999999999999999997664322
Q ss_pred CceeeeccccCccccCCCccC-----CCCcCcccchhhHHHHHHHHHhCCCCCCccccCcchHHHHHHhhCCCchhhhcc
Q 005040 583 DSVIQTMTMATIGYMAPEYGS-----EGIVSTKCDVYSYGVLLMETFTEKKPTDEMFTGEMSLRRWVKESLPHRLTEVVD 657 (717)
Q Consensus 583 ~~~~~~~~~~t~~y~aPE~~~-----~~~~~~~~Dvws~G~il~el~tg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 657 (717)
......+|+.|+|||++. ...++.++||||||+++|||++|+.||................. +..
T Consensus 180 ---~~~~~~~~~~y~aPE~~~~~~~~~~~~~~~~Di~slG~il~~l~~g~~pf~~~~~~~~~~~~~~~~~-~~~------ 249 (318)
T 2dyl_A 180 ---AKDRSAGCAAYMAPERIDPPDPTKPDYDIRADVWSLGISLVELATGQFPYKNCKTDFEVLTKVLQEE-PPL------ 249 (318)
T ss_dssp ----------CCTTCCHHHHC--------CCTHHHHHHHHHHHHHHHHSSCTTTTCCSHHHHHHHHHHSC-CCC------
T ss_pred ---cccccCCCccccChhhcccccccccCCccccchhhHHHHHHHHHhCCCCCCCCCccHHHHHHHhccC-CCC------
Confidence 123346899999999874 56788999999999999999999999975322211111111111 000
Q ss_pred ccchhhhhhhhhhHHHHHHHHHHHhhccCCCCCCCCCHHHHHH
Q 005040 658 ANLVREEQAFSDKMDCLFSIMDLALDCCMDTPHKRIHMTDAAA 700 (717)
Q Consensus 658 ~~~~~~~~~~~~~~~~~~~l~~li~~cl~~~P~~Rpt~~ev~~ 700 (717)
.+....++.++.+++.+||+.||++|||+.|+++
T Consensus 250 ---------~~~~~~~~~~l~~li~~~l~~dp~~Rps~~~ll~ 283 (318)
T 2dyl_A 250 ---------LPGHMGFSGDFQSFVKDCLTKDHRKRPKYNKLLE 283 (318)
T ss_dssp ---------CCSSSCCCHHHHHHHHHHTCSCTTTSCCHHHHTT
T ss_pred ---------CCccCCCCHHHHHHHHHHccCChhHCcCHHHHhh
Confidence 0111123456889999999999999999999986
No 252
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=100.00 E-value=1.7e-36 Score=346.86 Aligned_cols=338 Identities=23% Similarity=0.275 Sum_probs=256.3
Q ss_pred CCCCCccccCCCCCcEEECCCCcceecCCcCCCCCCCCCEEEcccccccCccCCcccccccccccCccCCcEEeccCCCC
Q 005040 1 MGTIPNSITNATKLIGLDLGLNSFSGHIPNTFGNLRHLSVLSLMMNNLTTESSSADQWSFLSSLTNCRNLANLALASNPL 80 (717)
Q Consensus 1 ~~~iP~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~l~~l~~L~~L~L~~N~l 80 (717)
+++||..++ +++++|||++|+|+++.+.+|.++++|++|+|++|+|+.+++++ |.++++|++|+|++|+|
T Consensus 43 l~~vP~~lp--~~~~~LdLs~N~i~~l~~~~f~~l~~L~~L~Ls~N~i~~i~~~~--------f~~L~~L~~L~Ls~N~l 112 (635)
T 4g8a_A 43 FYKIPDNLP--FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGA--------YQSLSHLSTLILTGNPI 112 (635)
T ss_dssp CSSCCSSSC--TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTT--------TTTCTTCCEEECTTCCC
T ss_pred cCccCCCCC--cCCCEEEeeCCCCCCCCHHHHhCCCCCCEEECCCCcCCCcChhH--------hcCCCCCCEEEccCCcC
Confidence 468898876 47899999999999988899999999999999999999988765 88999999999999999
Q ss_pred cccCCcchhccccccceeeecCCcceecCCccccCCCCCcEEEccCCCCccc-CCccccccCCCCEEeccCCcccccCCc
Q 005040 81 GGILPPLIGNFSASLQNIYAFECKLGGSIPKEIGNLRGLIVLSLGFNDLNGT-IPTSIGTLQQLQGFYVPENNLQGYVPH 159 (717)
Q Consensus 81 ~~~~~~~~~~l~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~-~~~~~~~l~~L~~L~l~~n~i~~~~~~ 159 (717)
++..+..|..+ ++|++|+|++|++++..+..|+++++|++|+|++|.++.. .|..++.+++|++|+|++|+|++..+.
T Consensus 113 ~~l~~~~f~~L-~~L~~L~Ls~N~l~~l~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~ 191 (635)
T 4g8a_A 113 QSLALGAFSGL-SSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCT 191 (635)
T ss_dssp CEECGGGGTTC-TTCCEEECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGG
T ss_pred CCCCHHHhcCC-CCCCEEECCCCcCCCCChhhhhcCcccCeeccccCccccCCCchhhccchhhhhhcccCccccccccc
Confidence 98777788887 6799999999999988888899999999999999999764 577889999999999999988765443
Q ss_pred cccCCC--------------------------------------------------------------------------
Q 005040 160 DLCHLE-------------------------------------------------------------------------- 165 (717)
Q Consensus 160 ~~~~l~-------------------------------------------------------------------------- 165 (717)
.|..+.
T Consensus 192 ~l~~L~~l~~~~~~~~ls~n~l~~i~~~~~~~~~~~~l~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~~l~~~~ 271 (635)
T 4g8a_A 192 DLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFD 271 (635)
T ss_dssp GGHHHHTCTTCCCEEECTTCCCCEECTTTTTTCEEEEEEEESCCSSHHHHHHHHHTTTTCEEEEEEEECCTTSCCCSCCC
T ss_pred cccchhhhhhhhhhhhcccCcccccCcccccchhhhhhhhhcccccccccchhhcCCccccccccccccccccccccccc
Confidence 332111
Q ss_pred ---------------------------------------------------------CCCEEeccCCcCcccCCc-----
Q 005040 166 ---------------------------------------------------------RLNILNLSGNKLSGAIPQ----- 183 (717)
Q Consensus 166 ---------------------------------------------------------~L~~L~L~~n~l~~~~~~----- 183 (717)
.|+.|++.+|.+....+.
T Consensus 272 ~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~L 351 (635)
T 4g8a_A 272 KSALEGLCNLTIEEFRLAYLDYYLDGIIDLFNCLTNVSSFSLVSVTIERVKDFSYNFGWQHLELVNCKFGQFPTLKLKSL 351 (635)
T ss_dssp TTTTGGGGGSEEEEEEEECCCSCEEECTTTTGGGTTCSEEEEESCEEEECGGGGSCCCCSEEEEESCEESSCCCCBCTTC
T ss_pred ccccccccchhhhhhhhhhhcccccchhhhhhhhcccccccccccccccccccccchhhhhhhcccccccCcCcccchhh
Confidence 122233333222211100
Q ss_pred --------------cccCCCCCCeEEecCcccc-----------------------------------------------
Q 005040 184 --------------CLASLTSLRSLYLQSNKLS----------------------------------------------- 202 (717)
Q Consensus 184 --------------~~~~l~~L~~L~L~~N~l~----------------------------------------------- 202 (717)
....+++|+.|++++|.+.
T Consensus 352 ~~l~l~~n~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~~~~~~~~~~~~~~~~l~~L~~l~l~~~~ 431 (635)
T 4g8a_A 352 KRLTFTSNKGGNAFSEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTISLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSN 431 (635)
T ss_dssp CEEEEESCCSCCBCCCCBCTTCCEEECCSSCCBEEEECCHHHHSCSCCCEEECCSCSEEEECSCCTTCTTCCEEECTTSE
T ss_pred hhcccccccCCCCcccccccccccchhhccccccccccccchhhhhhhhhhhccccccccccccccccccccchhhhhcc
Confidence 0112345555555555442
Q ss_pred --CC-CChhhhcccCCCeEEccCCcCcccCCccccCCCCCCeEEccCCCC-CCCCcccccCCcccccccccCccccCCCC
Q 005040 203 --SS-LPSSLWSLEYILRINLSSNSLKGTLPSNIQKLNVLIDLDLSRNQL-SSDIPSTIGTLKNLETLSLAGNQFQGPIP 278 (717)
Q Consensus 203 --~~-~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~l-~~~~~~~~~~l~~L~~L~l~~N~l~~~~~ 278 (717)
.. .+..|..+++++.++++.|.+.+..+..+..+++|+.|++++|.+ .+..|..|..+++|++|+|++|++++..|
T Consensus 432 ~~~~~~~~~~~~l~~l~~l~ls~n~l~~~~~~~~~~~~~L~~L~Ls~N~~~~~~~~~~~~~l~~L~~L~Ls~N~L~~l~~ 511 (635)
T 4g8a_A 432 LKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSP 511 (635)
T ss_dssp EESTTSSCTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECT
T ss_pred ccccccccccccccccccccccccccccccccccccchhhhhhhhhhcccccccCchhhhhccccCEEECCCCccCCcCh
Confidence 11 123455667788888888888877788888888888888888864 34566778888888888888888887778
Q ss_pred ccccccCccceEeccCCCCCCCCcccccccccccEEEccCCccccccccc-ccc-cccccccccCCccccCCC
Q 005040 279 ESVGNLISLESLDFSNNNLSGKIPKSLEALSHLKQFNVSHNRLEGEIPVK-GSF-KDFSAQSYFGNYALCGPP 349 (717)
Q Consensus 279 ~~~~~l~~L~~L~L~~N~~~~~~~~~~~~l~~L~~L~l~~N~l~~~~p~~-~~~-~~~~~~~~~~n~~~c~~~ 349 (717)
..|.++++|++|+|++|+|++..|..|..+++|+.|+|++|++++..|.. ..+ ..+..+.+.+|++.|+..
T Consensus 512 ~~f~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~~L~~L~L~~Np~~C~C~ 584 (635)
T 4g8a_A 512 TAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFACTCE 584 (635)
T ss_dssp TTTTTCTTCCEEECTTSCCCBCCCGGGTTCTTCCEEECTTSCCCBCCSSCTTCCCTTCCEEECTTCCBCCSGG
T ss_pred HHHcCCCCCCEEECCCCcCCCCChhHHhCCCCCCEEECCCCcCCCCCHHHHHhhhCcCCEEEeeCCCCcccCC
Confidence 88888888888888888888777888888888888888888888877653 223 456667778888888643
No 253
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=100.00 E-value=1.8e-36 Score=349.08 Aligned_cols=345 Identities=22% Similarity=0.210 Sum_probs=268.5
Q ss_pred CCccccCCCC--CcEEECCCCcceecCCcCCCCCCCCCEEEcccccccCccCCcccc---------------------cc
Q 005040 4 IPNSITNATK--LIGLDLGLNSFSGHIPNTFGNLRHLSVLSLMMNNLTTESSSADQW---------------------SF 60 (717)
Q Consensus 4 iP~~~~~l~~--L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~---------------------~~ 60 (717)
.|..|.+++. |++|+|++|.+++..|..|.++++|++|+|++|+++.+.+..... .+
T Consensus 238 ~~~~~~~l~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~l 317 (680)
T 1ziw_A 238 SNTTFLGLKWTNLTMLDLSYNNLNVVGNDSFAWLPQLEYFFLEYNNIQHLFSHSLHGLFNVRYLNLKRSFTKQSISLASL 317 (680)
T ss_dssp CTTTTGGGGGSCCCEEECTTSCCCEECTTTTTTCTTCCEEECCSCCBSEECTTTTTTCTTCCEEECTTCBCCC------C
T ss_pred ChhHhhccCcCCCCEEECCCCCcCccCcccccCcccccEeeCCCCccCccChhhhcCCCCccEEeccchhhhcccccccc
Confidence 3556666644 888888888888777778888888888888888887765432100 00
Q ss_pred cc----cccCccCCcEEeccCCCCcccCCcchhccccccceeeecCCcce--ecCCccccCC--CCCcEEEccCCCCccc
Q 005040 61 LS----SLTNCRNLANLALASNPLGGILPPLIGNFSASLQNIYAFECKLG--GSIPKEIGNL--RGLIVLSLGFNDLNGT 132 (717)
Q Consensus 61 ~~----~l~~l~~L~~L~L~~N~l~~~~~~~~~~l~~~L~~L~l~~n~l~--~~~~~~~~~l--~~L~~L~L~~n~l~~~ 132 (717)
+. .|..+++|++|+|++|++++..+..|..+ ++|++|++++|.+. ......|..+ ++|+.|++++|++++.
T Consensus 318 p~i~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l-~~L~~L~Ls~n~~~~~~l~~~~f~~~~~~~L~~L~L~~n~l~~~ 396 (680)
T 1ziw_A 318 PKIDDFSFQWLKCLEHLNMEDNDIPGIKSNMFTGL-INLKYLSLSNSFTSLRTLTNETFVSLAHSPLHILNLTKNKISKI 396 (680)
T ss_dssp CEECTTTTTTCTTCCEEECCSCCBCCCCTTTTTTC-TTCCEEECTTCBSCCCEECTTTTGGGTTSCCCEEECTTSCCCEE
T ss_pred cccChhhcccCCCCCEEECCCCccCCCChhHhccc-cCCcEEECCCCchhhhhcchhhhcccccCcCceEECCCCCCCeE
Confidence 00 35566667777777777766666666665 45777777766532 2222333332 4677777777888877
Q ss_pred CCccccccCCCCEEeccCCcccccCC-ccccCCCCCCEEeccCCcCcccCCccccCCCCCCeEEecCcccc--CCCChhh
Q 005040 133 IPTSIGTLQQLQGFYVPENNLQGYVP-HDLCHLERLNILNLSGNKLSGAIPQCLASLTSLRSLYLQSNKLS--SSLPSSL 209 (717)
Q Consensus 133 ~~~~~~~l~~L~~L~l~~n~i~~~~~-~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~--~~~~~~~ 209 (717)
.|..|..+++|+.|+|++|.+.+..+ ..|.++++|++|++++|++.+..+..|..+++|+.|++++|.+. +..|..|
T Consensus 397 ~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~p~~~ 476 (680)
T 1ziw_A 397 ESDAFSWLGHLEVLDLGLNEIGQELTGQEWRGLENIFEIYLSYNKYLQLTRNSFALVPSLQRLMLRRVALKNVDSSPSPF 476 (680)
T ss_dssp CTTTTTTCTTCCEEECCSSCCEEECCSGGGTTCTTCCEEECCSCSEEECCTTTTTTCTTCCEEECTTSCCBCTTCSSCTT
T ss_pred ChhhhhCCCCCCEEeCCCCcCccccCcccccCcccccEEecCCCCcceeChhhhhcCcccccchhccccccccccCCccc
Confidence 78888888899999999998876544 67888889999999999988777888888899999999999886 4678889
Q ss_pred hcccCCCeEEccCCcCcccCCccccCCCCCCeEEccCCCCCCCC--------cccccCCcccccccccCccccCCCCccc
Q 005040 210 WSLEYILRINLSSNSLKGTLPSNIQKLNVLIDLDLSRNQLSSDI--------PSTIGTLKNLETLSLAGNQFQGPIPESV 281 (717)
Q Consensus 210 ~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~--------~~~~~~l~~L~~L~l~~N~l~~~~~~~~ 281 (717)
..+++|+.|++++|+|++..+..|.++++|+.|++++|.+++.. +..|..+++|++|+|++|+++...+..|
T Consensus 477 ~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~ 556 (680)
T 1ziw_A 477 QPLRNLTILDLSNNNIANINDDMLEGLEKLEILDLQHNNLARLWKHANPGGPIYFLKGLSHLHILNLESNGFDEIPVEVF 556 (680)
T ss_dssp TTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCGGGGSTTSTTSCCCTTTTCTTCCEEECCSSCCCCCCTTTT
T ss_pred ccCCCCCEEECCCCCCCcCChhhhccccccCEEeCCCCCccccchhhccCCcchhhcCCCCCCEEECCCCCCCCCCHHHc
Confidence 99999999999999999888888999999999999999998642 2247889999999999999996666679
Q ss_pred cccCccceEeccCCCCCCCCcccccccccccEEEccCCccccccccc-c-cccccccccccCCccccCCC
Q 005040 282 GNLISLESLDFSNNNLSGKIPKSLEALSHLKQFNVSHNRLEGEIPVK-G-SFKDFSAQSYFGNYALCGPP 349 (717)
Q Consensus 282 ~~l~~L~~L~L~~N~~~~~~~~~~~~l~~L~~L~l~~N~l~~~~p~~-~-~~~~~~~~~~~~n~~~c~~~ 349 (717)
.++++|+.|+|++|++++..+..|..+++|+.|+|++|++++..|.. + .++.+..+.+.+|++.|+.+
T Consensus 557 ~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~L~~l~l~~N~~~c~c~ 626 (680)
T 1ziw_A 557 KDLFELKIIDLGLNNLNTLPASVFNNQVSLKSLNLQKNLITSVEKKVFGPAFRNLTELDMRFNPFDCTCE 626 (680)
T ss_dssp TTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECTTSCCCBCCHHHHHHHHTTCSEEECTTCCCCBCCC
T ss_pred ccccCcceeECCCCCCCcCCHhHhCCCCCCCEEECCCCcCCccChhHhcccccccCEEEccCCCcccCCc
Confidence 99999999999999999887888899999999999999999877653 2 46778888899999999866
No 254
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=100.00 E-value=5.9e-37 Score=344.18 Aligned_cols=152 Identities=20% Similarity=0.281 Sum_probs=111.7
Q ss_pred CCCCCccccCCCCCcEEECCCCcceecCCcCCCCCCCCCEEEcccccccCccCCcccccccccccCccCCcEEeccCCCC
Q 005040 1 MGTIPNSITNATKLIGLDLGLNSFSGHIPNTFGNLRHLSVLSLMMNNLTTESSSADQWSFLSSLTNCRNLANLALASNPL 80 (717)
Q Consensus 1 ~~~iP~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~l~~l~~L~~L~L~~N~l 80 (717)
+++||..+. ++|++|+|++|+|+++.|..|.++++|++|+|++|+|+.+++.+ |.++++|++|+|++|++
T Consensus 17 l~~ip~~~~--~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~--------~~~l~~L~~L~Ls~n~l 86 (549)
T 2z81_A 17 FTSIPSGLT--AAMKSLDLSFNKITYIGHGDLRACANLQVLILKSSRINTIEGDA--------FYSLGSLEHLDLSDNHL 86 (549)
T ss_dssp CSSCCSCCC--TTCCEEECCSSCCCEECSSTTSSCTTCCEEECTTSCCCEECTTT--------TTTCTTCCEEECTTSCC
T ss_pred cccccccCC--CCccEEECcCCccCccChhhhhcCCcccEEECCCCCcCccChhh--------ccccccCCEEECCCCcc
Confidence 457787665 67888888888888777788888888888888888888776543 77788888888888888
Q ss_pred cccCCcchhccccccceeeecCCccee-cCCccccCCCCCcEEEccCCC-CcccCCccccccCCCCEEeccCCcccccCC
Q 005040 81 GGILPPLIGNFSASLQNIYAFECKLGG-SIPKEIGNLRGLIVLSLGFND-LNGTIPTSIGTLQQLQGFYVPENNLQGYVP 158 (717)
Q Consensus 81 ~~~~~~~~~~l~~~L~~L~l~~n~l~~-~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~l~~n~i~~~~~ 158 (717)
++..+..+..+ ++|++|++++|++.+ ..|..+.++++|++|++++|. +....+..|.++++|++|++++|.+++..|
T Consensus 87 ~~~~~~~~~~l-~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~ 165 (549)
T 2z81_A 87 SSLSSSWFGPL-SSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRNYQS 165 (549)
T ss_dssp CSCCHHHHTTC-TTCCEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECT
T ss_pred CccCHHHhccC-CCCcEEECCCCcccccchhhhhhccCCccEEECCCCccccccCHhhhhcccccCeeeccCCcccccCh
Confidence 76666667766 568888888888775 345677777888888888777 443334567777777777777777776666
Q ss_pred ccccC
Q 005040 159 HDLCH 163 (717)
Q Consensus 159 ~~~~~ 163 (717)
..+..
T Consensus 166 ~~l~~ 170 (549)
T 2z81_A 166 QSLKS 170 (549)
T ss_dssp TTTTT
T ss_pred hhhhc
Confidence 55543
No 255
>3aln_A Dual specificity mitogen-activated protein kinase; protein AMP-PNP complex, transferase; HET: ANP; 2.30A {Homo sapiens} PDB: 3alo_A*
Probab=100.00 E-value=3.3e-38 Score=329.76 Aligned_cols=252 Identities=23% Similarity=0.290 Sum_probs=177.6
Q ss_pred ccCCccccccccccEEEEEEEec-CCCeEEEEEechhh-HHHHHHHHHHHH-HHHhcCCCceeeEeeeeecCCeeEEEEE
Q 005040 427 DEFNECNLLGTGGFGSVYKGTLS-DGTNVAIKIFNLQL-ERAFRSFDSECE-ILRNVRHRNLLKILGSCSNLDFKALVLE 503 (717)
Q Consensus 427 ~~~~~~~~lg~G~~g~V~~~~~~-~~~~vavK~~~~~~-~~~~~~~~~e~~-~l~~l~hpniv~~~~~~~~~~~~~lv~e 503 (717)
++|+..+.||+|+||.||+|... +++.||||++.... ......+..|+. +++.++||||+++++++.+.+..++|||
T Consensus 22 ~~y~~~~~lg~G~~g~Vy~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~e~~~~~~~~~h~niv~~~~~~~~~~~~~lv~e 101 (327)
T 3aln_A 22 EDLKDLGEIGRGAYGSVNKMVHKPSGQIMAVKRIRSTVDEKEQKQLLMDLDVVMRSSDCPYIVQFYGALFREGDCWICME 101 (327)
T ss_dssp CSEEC-CEEEECSSEEEEEEEETTTTEEEEEEEEECCCCHHHHHHHHHHHHHHHSSCCCTTBCCEEEEEECSSEEEEEEC
T ss_pred HHhhehheeccCCCEEEEEEEEcCCCCEEEEEEeecccCchHHHHHHHHHHHHHHcCCCCcEeeeeeEEEeCCceEEEEe
Confidence 68899999999999999999975 78999999987543 223344555555 7777899999999999999999999999
Q ss_pred ccCCCCHHHHHhh----CCCCCCHHHHHHHHHHHHHHHHHHhhcCCCC-CeEecCCCCCCeeeCCCCcEEEeeecccccc
Q 005040 504 FMPNGSLEKWLYS----HNYFLDILQRLNIMIDVGSALEYLHHCHSSA-PIIHCDLKPTNILLDENMVAHVSDFGISKLL 578 (717)
Q Consensus 504 ~~~~g~L~~~l~~----~~~~~~~~~~~~i~~~i~~~l~~LH~~~~~~-~ivH~dlk~~Nill~~~~~~kl~Dfgl~~~~ 578 (717)
|+++ +|.+++.. ....+++..+..++.|++.||.||| +. +|+||||||+||+++.++.+||+|||++...
T Consensus 102 ~~~~-~l~~~~~~~~~~~~~~~~~~~~~~i~~~i~~~l~~lH----~~~~ivH~dlkp~NIll~~~~~~kl~Dfg~~~~~ 176 (327)
T 3aln_A 102 LMST-SFDKFYKYVYSVLDDVIPEEILGKITLATVKALNHLK----ENLKIIHRDIKPSNILLDRSGNIKLCDFGISGQL 176 (327)
T ss_dssp CCSE-EHHHHHHHHHHTTCCCCCHHHHHHHHHHHHHHHHHHH----HHHSCCCSCCCGGGEEEETTTEEEECCCSSSCC-
T ss_pred ecCC-ChHHHHHHHHhhhcccCcHHHHHHHHHHHHHHHHHHh----ccCCEeECCCCHHHEEEcCCCCEEEccCCCceec
Confidence 9975 88888763 2456899999999999999999999 45 8999999999999999999999999999876
Q ss_pred CCCCCceeeeccccCccccCCCcc----CCCCcCcccchhhHHHHHHHHHhCCCCCCccccCcchHHHHHHhhCCCchhh
Q 005040 579 GEGEDSVIQTMTMATIGYMAPEYG----SEGIVSTKCDVYSYGVLLMETFTEKKPTDEMFTGEMSLRRWVKESLPHRLTE 654 (717)
Q Consensus 579 ~~~~~~~~~~~~~~t~~y~aPE~~----~~~~~~~~~Dvws~G~il~el~tg~~p~~~~~~~~~~~~~~~~~~~~~~~~~ 654 (717)
.... ......||+.|+|||++ .+..++.++||||||+++|||++|+.||....... ..........
T Consensus 177 ~~~~---~~~~~~gt~~y~aPE~~~~~~~~~~~~~~~Di~slG~il~~l~~g~~pf~~~~~~~----~~~~~~~~~~--- 246 (327)
T 3aln_A 177 VDSI---AKTRDAGCRPYMAPERIDPSASRQGYDVRSDVWSLGITLYELATGRFPYPKWNSVF----DQLTQVVKGD--- 246 (327)
T ss_dssp --------------------------------CCSHHHHHHHHHHHHHHHHSCCCSSCC-----------CCCCCSC---
T ss_pred cccc---ccccCCCCccccCceeeccccCcCCCCchhhHHHHHHHHHHHHHCCCCCCCcchHH----HHHHHHhcCC---
Confidence 4322 12334689999999988 56678999999999999999999999997532110 0000000000
Q ss_pred hccccchhhhhhhhhhHHHHHHHHHHHhhccCCCCCCCCCHHHHHH
Q 005040 655 VVDANLVREEQAFSDKMDCLFSIMDLALDCCMDTPHKRIHMTDAAA 700 (717)
Q Consensus 655 ~~~~~~~~~~~~~~~~~~~~~~l~~li~~cl~~~P~~Rpt~~ev~~ 700 (717)
.+.+.. .....++.++.+++.+||+.||++|||+.|+++
T Consensus 247 --~~~~~~-----~~~~~~~~~l~~li~~~l~~dp~~Rps~~ell~ 285 (327)
T 3aln_A 247 --PPQLSN-----SEEREFSPSFINFVNLCLTKDESKRPKYKELLK 285 (327)
T ss_dssp --CCCCCC-----CSSCCCCHHHHHHHHHHTCSSGGGSCCHHHHTT
T ss_pred --CCCCCC-----cccccCCHHHHHHHHHHhhCChhhCcCHHHHHh
Confidence 000000 001134566889999999999999999999976
No 256
>2eu9_A Dual specificity protein kinase CLK3; kinase domain, transferase; 1.53A {Homo sapiens} PDB: 2wu6_A* 2wu7_A* 3raw_A* 2exe_A 3nr9_A*
Probab=100.00 E-value=2.9e-37 Score=326.64 Aligned_cols=263 Identities=23% Similarity=0.279 Sum_probs=200.2
Q ss_pred hccCCccccccccccEEEEEEEec-CC-CeEEEEEechhhHHHHHHHHHHHHHHHhcCCCc------eeeEeeeeecCCe
Q 005040 426 TDEFNECNLLGTGGFGSVYKGTLS-DG-TNVAIKIFNLQLERAFRSFDSECEILRNVRHRN------LLKILGSCSNLDF 497 (717)
Q Consensus 426 ~~~~~~~~~lg~G~~g~V~~~~~~-~~-~~vavK~~~~~~~~~~~~~~~e~~~l~~l~hpn------iv~~~~~~~~~~~ 497 (717)
.++|++.+.||+|+||.||+|... ++ +.||+|++.... ...+.+.+|++++++++|++ ++.+++++...+.
T Consensus 18 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~~vavK~~~~~~-~~~~~~~~E~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~ 96 (355)
T 2eu9_A 18 QERYEIVGNLGEGTFGKVVECLDHARGKSQVALKIIRNVG-KYREAARLEINVLKKIKEKDKENKFLCVLMSDWFNFHGH 96 (355)
T ss_dssp TTTEEEEEEEEEETTEEEEEEEETTTTTEEEEEEEECSCH-HHHHHHHHHHHHHHHHHHHCTTSCSCBCCEEEEEEETTE
T ss_pred cccEEEEEEeeccCCeEEEEEEecCCCceEEEEEEEcccc-cchhHHHHHHHHHHHHhhcCCCCceeEEEeeeeeeeCCe
Confidence 368999999999999999999975 44 689999997543 33466788999999997665 9999999999999
Q ss_pred eEEEEEccCCCCHHHHHhhCC-CCCCHHHHHHHHHHHHHHHHHHhhcCCCCCeEecCCCCCCeee---------------
Q 005040 498 KALVLEFMPNGSLEKWLYSHN-YFLDILQRLNIMIDVGSALEYLHHCHSSAPIIHCDLKPTNILL--------------- 561 (717)
Q Consensus 498 ~~lv~e~~~~g~L~~~l~~~~-~~~~~~~~~~i~~~i~~~l~~LH~~~~~~~ivH~dlk~~Nill--------------- 561 (717)
.++||||+ ++++.+++.... ..+++..+..++.|++.||+||| +.+|+||||||+||++
T Consensus 97 ~~lv~e~~-~~~l~~~l~~~~~~~~~~~~~~~i~~qi~~~L~~lH----~~~ivH~Dlkp~NIll~~~~~~~~~~~~~~~ 171 (355)
T 2eu9_A 97 MCIAFELL-GKNTFEFLKENNFQPYPLPHVRHMAYQLCHALRFLH----ENQLTHTDLKPENILFVNSEFETLYNEHKSC 171 (355)
T ss_dssp EEEEEECC-CCBHHHHHHHTTTCCCCHHHHHHHHHHHHHHHHHHH----TTTEECCCCCGGGEEESCCCEEEEECCC-CC
T ss_pred EEEEEecc-CCChHHHHHhccCCCCCHHHHHHHHHHHHHHHHHHH----HCCcccCCCCHHHEEEecccccccccccccc
Confidence 99999999 667777777543 46899999999999999999999 7899999999999999
Q ss_pred ----CCCCcEEEeeeccccccCCCCCceeeeccccCccccCCCccCCCCcCcccchhhHHHHHHHHHhCCCCCCccccCc
Q 005040 562 ----DENMVAHVSDFGISKLLGEGEDSVIQTMTMATIGYMAPEYGSEGIVSTKCDVYSYGVLLMETFTEKKPTDEMFTGE 637 (717)
Q Consensus 562 ----~~~~~~kl~Dfgl~~~~~~~~~~~~~~~~~~t~~y~aPE~~~~~~~~~~~Dvws~G~il~el~tg~~p~~~~~~~~ 637 (717)
+.++.+||+|||++....... ....||+.|+|||++.+..++.++||||+|+++|||++|+.||......+
T Consensus 172 ~~~~~~~~~~kl~Dfg~~~~~~~~~-----~~~~gt~~y~aPE~~~~~~~~~~~Di~slG~il~el~~g~~pf~~~~~~~ 246 (355)
T 2eu9_A 172 EEKSVKNTSIRVADFGSATFDHEHH-----TTIVATRHYRPPEVILELGWAQPCDVWSIGCILFEYYRGFTLFQTHENRE 246 (355)
T ss_dssp CEEEESCCCEEECCCTTCEETTSCC-----CSSCSCGGGCCHHHHTTCCCCTHHHHHHHHHHHHHHHHSSCSCCCSSHHH
T ss_pred cccccCCCcEEEeecCccccccccc-----cCCcCCCcccCCeeeecCCCCCccchHHHHHHHHHHHhCCCCCCCCCHHH
Confidence 567899999999998754322 33468999999999999999999999999999999999999997632211
Q ss_pred chHHHHHHhh--CCCchhh-h------------ccc----------cchhhhhhhhhhHHHHHHHHHHHhhccCCCCCCC
Q 005040 638 MSLRRWVKES--LPHRLTE-V------------VDA----------NLVREEQAFSDKMDCLFSIMDLALDCCMDTPHKR 692 (717)
Q Consensus 638 ~~~~~~~~~~--~~~~~~~-~------------~~~----------~~~~~~~~~~~~~~~~~~l~~li~~cl~~~P~~R 692 (717)
......... .+..... . .+. ...............+.++.+++.+||+.||++|
T Consensus 247 -~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~~L~~dP~~R 325 (355)
T 2eu9_A 247 -HLVMMEKILGPIPSHMIHRTRKQKYFYKGGLVWDENSSDGRYVKENCKPLKSYMLQDSLEHVQLFDLMRRMLEFDPAQR 325 (355)
T ss_dssp -HHHHHHHHHCCCCHHHHHHCSCGGGEETTEECCCTTSHHHHHHHHHCCCGGGGCSCCSHHHHHHHHHHHHHTCSSTTTS
T ss_pred -HHHHHHHHcCCCcHHHhhhccchhhhcccccccccccchhccccccCCcccccccccchhHHHHHHHHHHHhcCChhhC
Confidence 111111111 1100000 0 000 0000000011122345678999999999999999
Q ss_pred CCHHHHHH
Q 005040 693 IHMTDAAA 700 (717)
Q Consensus 693 pt~~ev~~ 700 (717)
||+.|+++
T Consensus 326 pt~~e~l~ 333 (355)
T 2eu9_A 326 ITLAEALL 333 (355)
T ss_dssp CCHHHHTT
T ss_pred cCHHHHhc
Confidence 99999974
No 257
>3coi_A Mitogen-activated protein kinase 13; P38D, P38delta, ERK, MAP kinase, PMK, STK26, stress-activated protein kinase, structural genomics, PSI; 2.09A {Homo sapiens}
Probab=100.00 E-value=1.4e-37 Score=328.59 Aligned_cols=261 Identities=23% Similarity=0.266 Sum_probs=195.7
Q ss_pred hccCCccccccccccEEEEEEEec-CCCeEEEEEechhh--HHHHHHHHHHHHHHHhcCCCceeeEeeeeecCCe-----
Q 005040 426 TDEFNECNLLGTGGFGSVYKGTLS-DGTNVAIKIFNLQL--ERAFRSFDSECEILRNVRHRNLLKILGSCSNLDF----- 497 (717)
Q Consensus 426 ~~~~~~~~~lg~G~~g~V~~~~~~-~~~~vavK~~~~~~--~~~~~~~~~e~~~l~~l~hpniv~~~~~~~~~~~----- 497 (717)
.++|...+.||+|+||.||+|... +|+.||||++.... ....+.+.+|+.+++.++||||+++++++.....
T Consensus 23 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~~~~ 102 (353)
T 3coi_A 23 PKTYVSPTHVGSGAYGSVCSAIDKRSGEKVAIKKLSRPFQSEIFAKRAYRELLLLKHMQHENVIGLLDVFTPASSLRNFY 102 (353)
T ss_dssp ETTEEEEEEEEECSSEEEEEEEETTTTEEEEEEEESSTTSSHHHHHHHHHHHHHHHHCCCTTBCCCSEEECSCSSGGGCC
T ss_pred CceEEEeeeEecCCCeEEEEEEECCCCCEEEEEEecccccchHHHHHHHHHHHHHHhcCCCCcccHhheEecccccccce
Confidence 367899999999999999999975 79999999986532 3345678899999999999999999999977654
Q ss_pred -eEEEEEccCCCCHHHHHhhCCCCCCHHHHHHHHHHHHHHHHHHhhcCCCCCeEecCCCCCCeeeCCCCcEEEeeecccc
Q 005040 498 -KALVLEFMPNGSLEKWLYSHNYFLDILQRLNIMIDVGSALEYLHHCHSSAPIIHCDLKPTNILLDENMVAHVSDFGISK 576 (717)
Q Consensus 498 -~~lv~e~~~~g~L~~~l~~~~~~~~~~~~~~i~~~i~~~l~~LH~~~~~~~ivH~dlk~~Nill~~~~~~kl~Dfgl~~ 576 (717)
.++||||++ ++|.+++.. .+++..+..++.|++.||.||| +.+|+||||||+||+++.++.+||+|||++.
T Consensus 103 ~~~lv~e~~~-~~l~~~~~~---~~~~~~~~~i~~qi~~al~~LH----~~~ivH~dlkp~NIl~~~~~~~kl~Dfg~~~ 174 (353)
T 3coi_A 103 DFYLVMPFMQ-TDLQKIMGL---KFSEEKIQYLVYQMLKGLKYIH----SAGVVHRDLKPGNLAVNEDCELKILDFGLAR 174 (353)
T ss_dssp CCEEEEECCS-EEGGGTTTS---CCCHHHHHHHHHHHHHHHHHHH----HTTCCCSSCCGGGEEECTTCCEEECSTTCTT
T ss_pred eEEEEecccc-CCHHHHhcC---CCCHHHHHHHHHHHHHHHHHHH----HCCcccCCCCHHHEeECCCCcEEEeeccccc
Confidence 499999997 588887653 3899999999999999999999 6789999999999999999999999999998
Q ss_pred ccCCCCCceeeeccccCccccCCCccCC-CCcCcccchhhHHHHHHHHHhCCCCCCccccCcchHHHHHHhhC-CC-chh
Q 005040 577 LLGEGEDSVIQTMTMATIGYMAPEYGSE-GIVSTKCDVYSYGVLLMETFTEKKPTDEMFTGEMSLRRWVKESL-PH-RLT 653 (717)
Q Consensus 577 ~~~~~~~~~~~~~~~~t~~y~aPE~~~~-~~~~~~~Dvws~G~il~el~tg~~p~~~~~~~~~~~~~~~~~~~-~~-~~~ 653 (717)
..... .....+|+.|+|||++.+ ..++.++||||+|+++|||++|+.||.+.... ..+........ +. ...
T Consensus 175 ~~~~~-----~~~~~~t~~y~aPE~~~~~~~~~~~~Di~slG~il~el~~g~~pf~~~~~~-~~~~~i~~~~~~~~~~~~ 248 (353)
T 3coi_A 175 HADAE-----MTGYVVTRWYRAPEVILSWMHYNQTVDIWSVGCIMAEMLTGKTLFKGKDYL-DQLTQILKVTGVPGTEFV 248 (353)
T ss_dssp C-------------CCSBCCSCHHHHSCCSCCCTTHHHHHHHHHHHHHHHSSCSSBSSCHH-HHHHHHHHHHCBCCHHHH
T ss_pred CCCCC-----ccccccCcCcCCHHHHhCcCCCCchhhHHHHHHHHHHHHhCCCCCCCCCHH-HHHHHHHHHhCCCCHHHH
Confidence 65322 233468999999998776 67899999999999999999999999763221 11111111110 00 000
Q ss_pred hhcccc--------chhh-hhhh-hhhHHHHHHHHHHHhhccCCCCCCCCCHHHHHH
Q 005040 654 EVVDAN--------LVRE-EQAF-SDKMDCLFSIMDLALDCCMDTPHKRIHMTDAAA 700 (717)
Q Consensus 654 ~~~~~~--------~~~~-~~~~-~~~~~~~~~l~~li~~cl~~~P~~Rpt~~ev~~ 700 (717)
..+... +... ...+ .....++.++.+++.+||+.||++|||++|+++
T Consensus 249 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dp~~Rpt~~e~l~ 305 (353)
T 3coi_A 249 QKLNDKAAKSYIQSLPQTPRKDFTQLFPRASPQAADLLEKMLELDVDKRLTAAQALT 305 (353)
T ss_dssp TTCSCHHHHHHHHTSCBCSSCCTTTTCTTSCHHHHHHHHHHSCSCTTTSCCHHHHHT
T ss_pred HHHhhHHHHHHHHhCcCCCCccHHHhcCCcCHHHHHHHHHHcCCCcccCCCHHHHhc
Confidence 000000 0000 0000 011234567899999999999999999999985
No 258
>3e3p_A Protein kinase, putative glycogen synthase kinase; leishmaniasis, transferase; 2.00A {Leishmania major}
Probab=100.00 E-value=2.5e-37 Score=327.79 Aligned_cols=273 Identities=20% Similarity=0.218 Sum_probs=191.1
Q ss_pred HHHHHHhccCCccccccccccEEEEEEEec-CCCeEEEEEechhhHHHHHHHHHHHHHHHhcCCCceeeEeeeeecCCe-
Q 005040 420 LDIRRATDEFNECNLLGTGGFGSVYKGTLS-DGTNVAIKIFNLQLERAFRSFDSECEILRNVRHRNLLKILGSCSNLDF- 497 (717)
Q Consensus 420 ~~~~~~~~~~~~~~~lg~G~~g~V~~~~~~-~~~~vavK~~~~~~~~~~~~~~~e~~~l~~l~hpniv~~~~~~~~~~~- 497 (717)
.......++|++.+.||+|+||.||+|... +++.||||++..... ......+|++.++.++||||+++++++...+.
T Consensus 16 ~~~~~~~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~-~~~~~~~~~~~l~~l~h~niv~~~~~~~~~~~~ 94 (360)
T 3e3p_A 16 ERSRKEMDRFQVERMAGQGTFGTVQLGKEKSTGMSVAIKKVIQDPR-FRNRELQIMQDLAVLHHPNIVQLQSYFYTLGER 94 (360)
T ss_dssp HHHHHHHTTEEEC----------CEEEEETTTCCEEEEEEEECCTT-CCCHHHHHHHHHHHHCCTTBCCEEEEEEEECSS
T ss_pred hhchhhccceEEEEEEecCCCeEEEEEEECCCCCEEEEEEEecCcc-ccHHHHHHHHHHHhcCCCCcccHHHhhhccccc
Confidence 355677789999999999999999999975 789999998854432 22345668888899999999999999855332
Q ss_pred ------eEEEEEccCCCCHHHHHh---hCCCCCCHHHHHHHHHHHHHHHHHHhhcCCCCCeEecCCCCCCeeeCC-CCcE
Q 005040 498 ------KALVLEFMPNGSLEKWLY---SHNYFLDILQRLNIMIDVGSALEYLHHCHSSAPIIHCDLKPTNILLDE-NMVA 567 (717)
Q Consensus 498 ------~~lv~e~~~~g~L~~~l~---~~~~~~~~~~~~~i~~~i~~~l~~LH~~~~~~~ivH~dlk~~Nill~~-~~~~ 567 (717)
.++||||+++ +|.+.+. .....+++..+..++.|++.||.|||. + +.+|+||||||+||+++. ++.+
T Consensus 95 ~~~~~~~~lv~e~~~~-~l~~~~~~~~~~~~~~~~~~~~~~~~qi~~al~~lH~-~-~~~ivH~Dlkp~NIll~~~~~~~ 171 (360)
T 3e3p_A 95 DRRDIYLNVVMEYVPD-TLHRCCRNYYRRQVAPPPILIKVFLFQLIRSIGCLHL-P-SVNVCHRDIKPHNVLVNEADGTL 171 (360)
T ss_dssp CTTCEEEEEEEECCSC-BHHHHHHHHHTTTCCCCHHHHHHHHHHHHHHHHHHTS-T-TTCCBCSCCCGGGEEEETTTTEE
T ss_pred cccceeEEEEeecccc-cHHHHHHHHhhcccCCCHHHHHHHHHHHHHHHHHHhC-C-CCCeecCcCCHHHEEEeCCCCcE
Confidence 7899999976 6655554 234558999999999999999999993 2 468999999999999996 8999
Q ss_pred EEeeeccccccCCCCCceeeeccccCccccCCCccCCC-CcCcccchhhHHHHHHHHHhCCCCCCccccCcchHHHHHHh
Q 005040 568 HVSDFGISKLLGEGEDSVIQTMTMATIGYMAPEYGSEG-IVSTKCDVYSYGVLLMETFTEKKPTDEMFTGEMSLRRWVKE 646 (717)
Q Consensus 568 kl~Dfgl~~~~~~~~~~~~~~~~~~t~~y~aPE~~~~~-~~~~~~Dvws~G~il~el~tg~~p~~~~~~~~~~~~~~~~~ 646 (717)
||+|||++........ .....||+.|+|||++.+. .++.++|||||||++|||++|+.||..... ...+......
T Consensus 172 kl~Dfg~a~~~~~~~~---~~~~~gt~~y~aPE~~~~~~~~~~~~Di~slG~il~ell~g~~pf~~~~~-~~~~~~~~~~ 247 (360)
T 3e3p_A 172 KLCDFGSAKKLSPSEP---NVAYICSRYYRAPELIFGNQHYTTAVDIWSVGCIFAEMMLGEPIFRGDNS-AGQLHEIVRV 247 (360)
T ss_dssp EECCCTTCBCCCTTSC---CCSTTSCGGGCCHHHHTTCSSCCTHHHHHHHHHHHHHHHHSSCSSCCSSH-HHHHHHHHHH
T ss_pred EEeeCCCceecCCCCC---cccccCCcceeCHHHHcCCCCCCcHHHHHHHHHHHHHHHhCCCCcCCCCh-HHHHHHHHHH
Confidence 9999999987654332 2345689999999987654 489999999999999999999999976322 1222222221
Q ss_pred hCCCc--hhhhcccc-----------chhhhhhhhhhHHHHHHHHHHHhhccCCCCCCCCCHHHHHH
Q 005040 647 SLPHR--LTEVVDAN-----------LVREEQAFSDKMDCLFSIMDLALDCCMDTPHKRIHMTDAAA 700 (717)
Q Consensus 647 ~~~~~--~~~~~~~~-----------~~~~~~~~~~~~~~~~~l~~li~~cl~~~P~~Rpt~~ev~~ 700 (717)
..... .....++. .............++.++.+++.+||+.||++|||+.|+++
T Consensus 248 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~Rpt~~e~l~ 314 (360)
T 3e3p_A 248 LGCPSREVLRKLNPSHTDVDLYNSKGIPWSNVFSDHSLKDAKEAYDLLSALLQYLPEERMKPYEALC 314 (360)
T ss_dssp HCCCCHHHHHHHCTTCCCGGGGCCCCCCHHHHTTTCCCTTHHHHHHHHHHHTCSSGGGSCCHHHHTT
T ss_pred cCCCCHHHHHhcccchhhccccccccCCcccccchhhccccHHHHHHHHHHhccCccccCCHHHHhc
Confidence 11110 00000000 00000000011124677999999999999999999999986
No 259
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=100.00 E-value=4.3e-37 Score=355.01 Aligned_cols=308 Identities=19% Similarity=0.232 Sum_probs=208.4
Q ss_pred CCcCCCCCCCCCEEEcccccccCccCCcccc---------ccccccc--CccCCcEEeccCCCCcccCCcchhccccccc
Q 005040 28 IPNTFGNLRHLSVLSLMMNNLTTESSSADQW---------SFLSSLT--NCRNLANLALASNPLGGILPPLIGNFSASLQ 96 (717)
Q Consensus 28 ~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~---------~~~~~l~--~l~~L~~L~L~~N~l~~~~~~~~~~l~~~L~ 96 (717)
+|..|++|++|++|+|++|+|+......... .++..+. ++++|++|+|++|.+.+.+|..+.++ ++|+
T Consensus 440 IP~~l~~L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~iP~~l~f~~L~~L~~L~Ls~N~l~~~iP~~l~~L-~~L~ 518 (876)
T 4ecn_A 440 ISKAIQRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTDVELYNCPNMTQLPDFLYDL-PELQ 518 (876)
T ss_dssp ECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEESCTTCCSCCGGGGGC-SSCC
T ss_pred hhHHHhcCCCCCEEECcCCcCCCCcccccccccccccccccCChhhhhccCCCCCEEECcCCCCCccChHHHhCC-CCCC
Confidence 5666777777777777777777610000000 0233345 77777777777777777777777776 5677
Q ss_pred eeeecCCc-cee-cCCccccCC-------CCCcEEEccCCCCcccCCc--cccccCCCCEEeccCCcccccCCccccCCC
Q 005040 97 NIYAFECK-LGG-SIPKEIGNL-------RGLIVLSLGFNDLNGTIPT--SIGTLQQLQGFYVPENNLQGYVPHDLCHLE 165 (717)
Q Consensus 97 ~L~l~~n~-l~~-~~~~~~~~l-------~~L~~L~L~~n~l~~~~~~--~~~~l~~L~~L~l~~n~i~~~~~~~~~~l~ 165 (717)
.|+|++|+ +++ .+|..++++ ++|++|+|++|+++ .+|. .|.++++|+.|+|++|+++ .+| .|..++
T Consensus 519 ~L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L~-~ip~~~~l~~L~~L~~L~Ls~N~l~-~lp-~~~~L~ 595 (876)
T 4ecn_A 519 SLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLE-EFPASASLQKMVKLGLLDCVHNKVR-HLE-AFGTNV 595 (876)
T ss_dssp EEECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSCCC-BCCCHHHHTTCTTCCEEECTTSCCC-BCC-CCCTTS
T ss_pred EEECcCCCCcccccchHHHHhhhhcccccCCccEEEeeCCcCC-ccCChhhhhcCCCCCEEECCCCCcc-cch-hhcCCC
Confidence 77777776 666 566554444 37777777777777 5666 6777777777777777777 455 677777
Q ss_pred CCCEEeccCCcCcccCCccccCCCC-CCeEEecCccccCCCChhhhcccC--CCeEEccCCcCcccCCccc---c--CCC
Q 005040 166 RLNILNLSGNKLSGAIPQCLASLTS-LRSLYLQSNKLSSSLPSSLWSLEY--ILRINLSSNSLKGTLPSNI---Q--KLN 237 (717)
Q Consensus 166 ~L~~L~L~~n~l~~~~~~~~~~l~~-L~~L~L~~N~l~~~~~~~~~~l~~--L~~L~l~~N~l~~~~~~~~---~--~l~ 237 (717)
+|+.|+|++|+++ .+|..+..+++ |+.|+|++|+++ .+|..+..+.. |+.|+|++|.+.+.+|... . .++
T Consensus 596 ~L~~L~Ls~N~l~-~lp~~l~~l~~~L~~L~Ls~N~L~-~lp~~~~~~~~~~L~~L~Ls~N~l~g~ip~l~~~l~~~~~~ 673 (876)
T 4ecn_A 596 KLTDLKLDYNQIE-EIPEDFCAFTDQVEGLGFSHNKLK-YIPNIFNAKSVYVMGSVDFSYNKIGSEGRNISCSMDDYKGI 673 (876)
T ss_dssp EESEEECCSSCCS-CCCTTSCEECTTCCEEECCSSCCC-SCCSCCCTTCSSCEEEEECCSSCTTTTSSSCSSCTTTCCCC
T ss_pred cceEEECcCCccc-cchHHHhhccccCCEEECcCCCCC-cCchhhhccccCCCCEEECcCCcCCCccccchhhhccccCC
Confidence 7777777777777 56666777777 777777777777 55666655543 7777777777776544322 2 334
Q ss_pred CCCeEEccCCCCCCCCcccccCCcccccccccCccccCCCCccccc--------cCccceEeccCCCCCCCCccccc--c
Q 005040 238 VLIDLDLSRNQLSSDIPSTIGTLKNLETLSLAGNQFQGPIPESVGN--------LISLESLDFSNNNLSGKIPKSLE--A 307 (717)
Q Consensus 238 ~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~--------l~~L~~L~L~~N~~~~~~~~~~~--~ 307 (717)
+|+.|+|++|.++...+..+..+++|+.|+|++|++. .+|..+.. +++|+.|+|++|+++ .+|..+. .
T Consensus 674 ~L~~L~Ls~N~L~~lp~~~~~~l~~L~~L~Ls~N~L~-~ip~~~~~~~~~~l~nl~~L~~L~Ls~N~L~-~lp~~l~~~~ 751 (876)
T 4ecn_A 674 NASTVTLSYNEIQKFPTELFATGSPISTIILSNNLMT-SIPENSLKPKDGNYKNTYLLTTIDLRFNKLT-SLSDDFRATT 751 (876)
T ss_dssp CEEEEECCSSCCCSCCHHHHHTTCCCSEEECCSCCCS-CCCTTSSSCTTSCCTTGGGCCEEECCSSCCC-CCCGGGSTTT
T ss_pred CcCEEEccCCcCCccCHHHHccCCCCCEEECCCCcCC-ccChHHhccccccccccCCccEEECCCCCCc-cchHHhhhcc
Confidence 7788888888887543334457788888888888888 44444332 238888888888888 6777776 8
Q ss_pred cccccEEEccCCcccccccccccccccccccccCCc
Q 005040 308 LSHLKQFNVSHNRLEGEIPVKGSFKDFSAQSYFGNY 343 (717)
Q Consensus 308 l~~L~~L~l~~N~l~~~~p~~~~~~~~~~~~~~~n~ 343 (717)
+++|+.|+|++|++++.+.....++.+..+.+..|+
T Consensus 752 l~~L~~L~Ls~N~L~~lp~~l~~L~~L~~L~Ls~N~ 787 (876)
T 4ecn_A 752 LPYLSNMDVSYNCFSSFPTQPLNSSQLKAFGIRHQR 787 (876)
T ss_dssp CTTCCEEECCSSCCSSCCCGGGGCTTCCEEECCCCB
T ss_pred CCCcCEEEeCCCCCCccchhhhcCCCCCEEECCCCC
Confidence 888888888888888743344566666666666654
No 260
>3fhr_A MAP kinase-activated protein kinase 3; kinase-inhibitor complex, ATP-binding, cytoplasm, nucleotide-binding, nucleus, phosphoprotein, polymorphism; HET: P4O; 1.90A {Homo sapiens} PDB: 3fxw_A* 3r1n_A* 3she_A* 2oza_A 3fyk_X* 3fyj_X* 2p3g_X* 3ka0_A* 3fpm_A* 2pzy_A* 3a2c_A* 3kc3_A* 3gok_A* 2jbo_A* 2jbp_A* 3r2y_A* 3r30_A* 3r2b_A*
Probab=100.00 E-value=1.4e-37 Score=325.65 Aligned_cols=252 Identities=21% Similarity=0.267 Sum_probs=173.9
Q ss_pred HhccCCccc-cccccccEEEEEEEec-CCCeEEEEEechhhHHHHHHHHHHHHHHHhcCCCceeeEeeeeec----CCee
Q 005040 425 ATDEFNECN-LLGTGGFGSVYKGTLS-DGTNVAIKIFNLQLERAFRSFDSECEILRNVRHRNLLKILGSCSN----LDFK 498 (717)
Q Consensus 425 ~~~~~~~~~-~lg~G~~g~V~~~~~~-~~~~vavK~~~~~~~~~~~~~~~e~~~l~~l~hpniv~~~~~~~~----~~~~ 498 (717)
..++|.+.+ .||+|+||.||+|... +++.||||++...... ..+....++.++||||+++++++.. ....
T Consensus 26 ~~~~y~i~~~~lG~G~~g~V~~~~~~~~~~~vavK~~~~~~~~----~~e~~~~~~~~~h~~i~~~~~~~~~~~~~~~~~ 101 (336)
T 3fhr_A 26 VTDDYQLSKQVLGLGVNGKVLECFHRRTGQKCALKLLYDSPKA----RQEVDHHWQASGGPHIVCILDVYENMHHGKRCL 101 (336)
T ss_dssp GGGTEEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEESSHHH----HHHHHHHHHHTTSTTBCCEEEEEEEEETTEEEE
T ss_pred ccceeEecceeeeeCCCeEEEEEEECCCCCEEEEEEecCcHHH----HHHHHHHHHhcCCCChHHHHHHHhhccCCCceE
Confidence 346888855 6999999999999976 7999999998654221 1222334566799999999999866 4558
Q ss_pred EEEEEccCCCCHHHHHhhCC-CCCCHHHHHHHHHHHHHHHHHHhhcCCCCCeEecCCCCCCeeeCC---CCcEEEeeecc
Q 005040 499 ALVLEFMPNGSLEKWLYSHN-YFLDILQRLNIMIDVGSALEYLHHCHSSAPIIHCDLKPTNILLDE---NMVAHVSDFGI 574 (717)
Q Consensus 499 ~lv~e~~~~g~L~~~l~~~~-~~~~~~~~~~i~~~i~~~l~~LH~~~~~~~ivH~dlk~~Nill~~---~~~~kl~Dfgl 574 (717)
++||||+++|+|.+++.... ..+++..++.++.|++.||.||| +.+|+||||||+||+++. ++.+||+|||+
T Consensus 102 ~lv~e~~~gg~L~~~l~~~~~~~l~~~~~~~i~~ql~~~l~~LH----~~~ivH~dlkp~NIll~~~~~~~~~kl~Dfg~ 177 (336)
T 3fhr_A 102 LIIMECMEGGELFSRIQERGDQAFTEREAAEIMRDIGTAIQFLH----SHNIAHRDVKPENLLYTSKEKDAVLKLTDFGF 177 (336)
T ss_dssp EEEEECCTTEEHHHHHHTC-CCCCBHHHHHHHHHHHHHHHHHHH----HTTEECSCCSGGGEEESCSSTTCCEEECCCTT
T ss_pred EEEEeccCCCCHHHHHHhcCCCCCCHHHHHHHHHHHHHHHHHHH----hCCeecCCCCHHHEEEEecCCCceEEEecccc
Confidence 99999999999999998653 46899999999999999999999 678999999999999986 45699999999
Q ss_pred ccccCCCCCceeeeccccCccccCCCccCCCCcCcccchhhHHHHHHHHHhCCCCCCccccCcchHHHHHHhhCCCchhh
Q 005040 575 SKLLGEGEDSVIQTMTMATIGYMAPEYGSEGIVSTKCDVYSYGVLLMETFTEKKPTDEMFTGEMSLRRWVKESLPHRLTE 654 (717)
Q Consensus 575 ~~~~~~~~~~~~~~~~~~t~~y~aPE~~~~~~~~~~~Dvws~G~il~el~tg~~p~~~~~~~~~~~~~~~~~~~~~~~~~ 654 (717)
+....... .....+|+.|+|||++.+..++.++||||||+++|||++|+.||........... . .......
T Consensus 178 ~~~~~~~~----~~~~~~t~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~g~~pf~~~~~~~~~~~-~-~~~~~~~--- 248 (336)
T 3fhr_A 178 AKETTQNA----LQTPCYTPYYVAPEVLGPEKYDKSCDMWSLGVIMYILLCGFPPFYSNTGQAISPG-M-KRRIRLG--- 248 (336)
T ss_dssp CEEC--------------------------CHHHHHHHHHHHHHHHHHHHHSSCCC------------------------
T ss_pred ceeccccc----cccCCCCcCccChhhhCCCCCCchhhHHHHHHHHHHHHHCCCCCCCccchhhhhh-H-HHhhhcc---
Confidence 98654322 2344679999999999999999999999999999999999999965322211000 0 0000000
Q ss_pred hccccchhhhhhhhhhHHHHHHHHHHHhhccCCCCCCCCCHHHHHH
Q 005040 655 VVDANLVREEQAFSDKMDCLFSIMDLALDCCMDTPHKRIHMTDAAA 700 (717)
Q Consensus 655 ~~~~~~~~~~~~~~~~~~~~~~l~~li~~cl~~~P~~Rpt~~ev~~ 700 (717)
..... .+....++.++.+++.+||+.||++|||+.|+++
T Consensus 249 --~~~~~-----~~~~~~~~~~~~~li~~~L~~dP~~Rpt~~ell~ 287 (336)
T 3fhr_A 249 --QYGFP-----NPEWSEVSEDAKQLIRLLLKTDPTERLTITQFMN 287 (336)
T ss_dssp ----CCC-----TTTSTTCCHHHHHHHHHHSCSSGGGSCCHHHHHH
T ss_pred --ccccC-----chhhccCCHHHHHHHHHHCCCChhHCcCHHHHhc
Confidence 00000 0111234567889999999999999999999987
No 261
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=100.00 E-value=2.1e-36 Score=324.14 Aligned_cols=292 Identities=19% Similarity=0.204 Sum_probs=162.2
Q ss_pred CCCCcEEECCCCcceecCCcCCCCCCCCCEEEcccccccCccCCcccccccccccCccCCcEEeccCCCCcccCCcchhc
Q 005040 11 ATKLIGLDLGLNSFSGHIPNTFGNLRHLSVLSLMMNNLTTESSSADQWSFLSSLTNCRNLANLALASNPLGGILPPLIGN 90 (717)
Q Consensus 11 l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~ 90 (717)
+.++++|++++|.++.+.+..|.++++|++|+|++|.|+.+++.. |..+++|++|+|++|.+++..|..+..
T Consensus 44 l~~l~~l~l~~~~l~~l~~~~~~~l~~L~~L~L~~n~i~~~~~~~--------~~~l~~L~~L~L~~n~l~~~~~~~~~~ 115 (390)
T 3o6n_A 44 LNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYA--------FAYAHTIQKLYMGFNAIRYLPPHVFQN 115 (390)
T ss_dssp GCCCSEEEEESCEESEECTHHHHHCCCCSEEECTTSCCCEECTTT--------TTTCTTCCEEECCSSCCCCCCTTTTTT
T ss_pred cCCceEEEecCCchhhCChhHhcccccCcEEECCCCcccccChhh--------ccCCCCcCEEECCCCCCCcCCHHHhcC
Confidence 455556666666655444444555566666666666655554332 555566666666666665555555555
Q ss_pred cccccceeeecCCcceecCCccccCCCCCcEEEccCCCCcccCCccccccCCCCEEeccCCcccccCCccccCCCC----
Q 005040 91 FSASLQNIYAFECKLGGSIPKEIGNLRGLIVLSLGFNDLNGTIPTSIGTLQQLQGFYVPENNLQGYVPHDLCHLER---- 166 (717)
Q Consensus 91 l~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~l~~---- 166 (717)
+ ++|++|++++|++....+..|.++++|++|+|++|.+++..+..|.++++|++|++++|++++.. +..+++
T Consensus 116 l-~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~---~~~l~~L~~L 191 (390)
T 3o6n_A 116 V-PLLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHVD---LSLIPSLFHA 191 (390)
T ss_dssp C-TTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTSSCTTCCEEECCSSCCSBCC---GGGCTTCSEE
T ss_pred C-CCCCEEECCCCccCcCCHHHhcCCCCCcEEECCCCccCccChhhccCCCCCCEEECCCCcCCccc---ccccccccee
Confidence 5 44666666666655433334455566666666666665555555555666666666666555432 333444
Q ss_pred ---------------CCEEeccCCcCcccCCccccCCCCCCeEEecCccccCCCChhhhcccCCCeEEccCCcCcccCCc
Q 005040 167 ---------------LNILNLSGNKLSGAIPQCLASLTSLRSLYLQSNKLSSSLPSSLWSLEYILRINLSSNSLKGTLPS 231 (717)
Q Consensus 167 ---------------L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~ 231 (717)
|++|++++|.+... +. ...++|+.|++++|.+++. ..+..+++|++|++++|.+++..|.
T Consensus 192 ~l~~n~l~~~~~~~~L~~L~l~~n~l~~~-~~--~~~~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~Ls~n~l~~~~~~ 266 (390)
T 3o6n_A 192 NVSYNLLSTLAIPIAVEELDASHNSINVV-RG--PVNVELTILKLQHNNLTDT--AWLLNYPGLVEVDLSYNELEKIMYH 266 (390)
T ss_dssp ECCSSCCSEEECCSSCSEEECCSSCCCEE-EC--CCCSSCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCEEESG
T ss_pred ecccccccccCCCCcceEEECCCCeeeec-cc--cccccccEEECCCCCCccc--HHHcCCCCccEEECCCCcCCCcChh
Confidence 45555555555432 21 1134566666666666532 3455566666666666666655555
Q ss_pred cccCCCCCCeEEccCCCCCCCCcccccCCcccccccccCccccCCCCccccccCccceEeccCCCCCCCCcccccccccc
Q 005040 232 NIQKLNVLIDLDLSRNQLSSDIPSTIGTLKNLETLSLAGNQFQGPIPESVGNLISLESLDFSNNNLSGKIPKSLEALSHL 311 (717)
Q Consensus 232 ~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~~~~~~~~~~l~~L 311 (717)
.|..+++|+.|+|++|.+++ ++..+..+++|++|++++|++. .+|..+..+++|+.|+|++|+++.. + +..+++|
T Consensus 267 ~~~~l~~L~~L~L~~n~l~~-~~~~~~~l~~L~~L~L~~n~l~-~~~~~~~~l~~L~~L~L~~N~i~~~-~--~~~~~~L 341 (390)
T 3o6n_A 267 PFVKMQRLERLYISNNRLVA-LNLYGQPIPTLKVLDLSHNHLL-HVERNQPQFDRLENLYLDHNSIVTL-K--LSTHHTL 341 (390)
T ss_dssp GGTTCSSCCEEECCSSCCCE-EECSSSCCTTCCEEECCSSCCC-CCGGGHHHHTTCSEEECCSSCCCCC-C--CCTTCCC
T ss_pred HccccccCCEEECCCCcCcc-cCcccCCCCCCCEEECCCCcce-ecCccccccCcCCEEECCCCcccee-C--chhhccC
Confidence 66666666666666666654 3444455566666666666665 3444555566666666666666533 2 4455566
Q ss_pred cEEEccCCccccc
Q 005040 312 KQFNVSHNRLEGE 324 (717)
Q Consensus 312 ~~L~l~~N~l~~~ 324 (717)
+.|++++|++++.
T Consensus 342 ~~L~l~~N~~~~~ 354 (390)
T 3o6n_A 342 KNLTLSHNDWDCN 354 (390)
T ss_dssp SEEECCSSCEEHH
T ss_pred CEEEcCCCCccch
Confidence 6666666666554
No 262
>1q8y_A SR protein kinase; transferase; HET: ADP ADE; 2.05A {Saccharomyces cerevisiae} SCOP: d.144.1.7 PDB: 1q8z_A 1q97_A* 1q99_A* 1how_A 2jd5_A
Probab=100.00 E-value=8.7e-38 Score=333.07 Aligned_cols=263 Identities=20% Similarity=0.227 Sum_probs=198.3
Q ss_pred ccCCccccccccccEEEEEEEec-CCCeEEEEEechhhHHHHHHHHHHHHHHHhcC-----------CCceeeEeeeeec
Q 005040 427 DEFNECNLLGTGGFGSVYKGTLS-DGTNVAIKIFNLQLERAFRSFDSECEILRNVR-----------HRNLLKILGSCSN 494 (717)
Q Consensus 427 ~~~~~~~~lg~G~~g~V~~~~~~-~~~~vavK~~~~~~~~~~~~~~~e~~~l~~l~-----------hpniv~~~~~~~~ 494 (717)
++|++.+.||+|+||.||+|+.. +++.||||++.... ...+.+.+|++++++++ ||||+++++++..
T Consensus 19 ~~y~~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~-~~~~~~~~e~~~l~~l~~~~~~~~~~~~~~~i~~~~~~~~~ 97 (373)
T 1q8y_A 19 ARYILVRKLGWGHFSTVWLAKDMVNNTHVAMKIVRGDK-VYTEAAEDEIKLLQRVNDADNTKEDSMGANHILKLLDHFNH 97 (373)
T ss_dssp TTEEEEEEEEECSSEEEEEEEETTTTEEEEEEEECSCH-HHHHHHHHHHHHHHHHHHTCCSHHHHHHHTTBCCCCEEEEE
T ss_pred CeEEEEEeeeecCCeEEEEEEecCCCcEEEEEEecCCc-cchhhhhHHHHHHHHhhcccccchhccccchHHHHHHHhhc
Confidence 68999999999999999999974 78999999997543 23456788999999886 8999999999875
Q ss_pred CC----eeEEEEEccCCCCHHHHHhhC-CCCCCHHHHHHHHHHHHHHHHHHhhcCCCC-CeEecCCCCCCeeeC------
Q 005040 495 LD----FKALVLEFMPNGSLEKWLYSH-NYFLDILQRLNIMIDVGSALEYLHHCHSSA-PIIHCDLKPTNILLD------ 562 (717)
Q Consensus 495 ~~----~~~lv~e~~~~g~L~~~l~~~-~~~~~~~~~~~i~~~i~~~l~~LH~~~~~~-~ivH~dlk~~Nill~------ 562 (717)
.+ ..++||||+ +++|.+++... ...+++..+..++.|++.||+||| +. +|+||||||+||+++
T Consensus 98 ~~~~~~~~~lv~e~~-~~~L~~~~~~~~~~~~~~~~~~~i~~qi~~aL~~lH----~~~~ivH~Dikp~NIll~~~~~~~ 172 (373)
T 1q8y_A 98 KGPNGVHVVMVFEVL-GENLLALIKKYEHRGIPLIYVKQISKQLLLGLDYMH----RRCGIIHTDIKPENVLMEIVDSPE 172 (373)
T ss_dssp EETTEEEEEEEECCC-CEEHHHHHHHTTTSCCCHHHHHHHHHHHHHHHHHHH----HTTCEECSCCSGGGEEEEEEETTT
T ss_pred cCCCCceEEEEEecC-CCCHHHHHHHhhccCCcHHHHHHHHHHHHHHHHHHH----hcCCEEecCCChHHeEEeccCCCc
Confidence 44 789999999 88999999864 345899999999999999999999 56 899999999999994
Q ss_pred CCCcEEEeeeccccccCCCCCceeeeccccCccccCCCccCCCCcCcccchhhHHHHHHHHHhCCCCCCccccCc-----
Q 005040 563 ENMVAHVSDFGISKLLGEGEDSVIQTMTMATIGYMAPEYGSEGIVSTKCDVYSYGVLLMETFTEKKPTDEMFTGE----- 637 (717)
Q Consensus 563 ~~~~~kl~Dfgl~~~~~~~~~~~~~~~~~~t~~y~aPE~~~~~~~~~~~Dvws~G~il~el~tg~~p~~~~~~~~----- 637 (717)
..+.+||+|||++...... .....||+.|+|||++.+..++.++|||||||++|||++|+.||.......
T Consensus 173 ~~~~~kl~Dfg~a~~~~~~-----~~~~~~t~~y~aPE~~~~~~~~~~~Di~slG~il~el~~g~~pf~~~~~~~~~~~~ 247 (373)
T 1q8y_A 173 NLIQIKIADLGNACWYDEH-----YTNSIQTREYRSPEVLLGAPWGCGADIWSTACLIFELITGDFLFEPDEGHSYTKDD 247 (373)
T ss_dssp TEEEEEECCCTTCEETTBC-----CCSCCSCGGGCCHHHHHTCCCCTHHHHHHHHHHHHHHHHSSCCC---------CHH
T ss_pred CcceEEEcccccccccCCC-----CCCCCCCccccCcHHHhCCCCCchHhHHHHHHHHHHHHhCCCCCCCCcccccCChH
Confidence 4458999999999876432 233468999999999999999999999999999999999999997643211
Q ss_pred chHHHHHHhhCCCc--h-------hhhccc----------c---chh-hhhhhhhhHHHHHHHHHHHhhccCCCCCCCCC
Q 005040 638 MSLRRWVKESLPHR--L-------TEVVDA----------N---LVR-EEQAFSDKMDCLFSIMDLALDCCMDTPHKRIH 694 (717)
Q Consensus 638 ~~~~~~~~~~~~~~--~-------~~~~~~----------~---~~~-~~~~~~~~~~~~~~l~~li~~cl~~~P~~Rpt 694 (717)
..+........+.. . ...+.. . +.. ..........++.++.+++.+||+.||++|||
T Consensus 248 ~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~Rpt 327 (373)
T 1q8y_A 248 DHIAQIIELLGELPSYLLRNGKYTRTFFNSRGLLRNISKLKFWPLEDVLTEKYKFSKDEAKEISDFLSPMLQLDPRKRAD 327 (373)
T ss_dssp HHHHHHHHHHCSCCHHHHHHCTTHHHHBCC--CBSSCCCCCBCCHHHHHHHTTCCCHHHHHHHHHHHGGGGCSSTTTCBC
T ss_pred HHHHHHHHhcCCCCHHHHhccchhhhhcCCcchhcccccccccchhhhhhhcccCCcchHHHHHHHHHHHhccCccccCC
Confidence 11111111110000 0 000000 0 000 00011122456788999999999999999999
Q ss_pred HHHHHH
Q 005040 695 MTDAAA 700 (717)
Q Consensus 695 ~~ev~~ 700 (717)
++|+++
T Consensus 328 ~~ell~ 333 (373)
T 1q8y_A 328 AGGLVN 333 (373)
T ss_dssp HHHHHT
T ss_pred HHHHhh
Confidence 999986
No 263
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=100.00 E-value=1.9e-36 Score=340.36 Aligned_cols=311 Identities=19% Similarity=0.209 Sum_probs=263.1
Q ss_pred CCCC-ccccCCCCCcEEECCCCcceecCCcCCCCCCCCCEEEcccccccCccCCcccccccccccCccCCcEEeccCCCC
Q 005040 2 GTIP-NSITNATKLIGLDLGLNSFSGHIPNTFGNLRHLSVLSLMMNNLTTESSSADQWSFLSSLTNCRNLANLALASNPL 80 (717)
Q Consensus 2 ~~iP-~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~l~~l~~L~~L~L~~N~l 80 (717)
+.+| ..|.++++|++|+|++|.|+++.|+.|.++++|++|+|++|+|+.++. . .+++|++|+|++|++
T Consensus 65 ~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~lp~----------~-~l~~L~~L~Ls~N~l 133 (562)
T 3a79_B 65 SELRMPDISFLSELRVLRLSHNRIRSLDFHVFLFNQDLEYLDVSHNRLQNISC----------C-PMASLRHLDLSFNDF 133 (562)
T ss_dssp CCCCGGGTTTCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECTTSCCCEECS----------C-CCTTCSEEECCSSCC
T ss_pred cccChhhhccCCCccEEECCCCCCCcCCHHHhCCCCCCCEEECCCCcCCccCc----------c-ccccCCEEECCCCCc
Confidence 4555 689999999999999999999999999999999999999999998763 2 789999999999999
Q ss_pred ccc-CCcchhccccccceeeecCCcceecCCccccCCCCC--cEEEccCCCC--cccCCccccccC--------------
Q 005040 81 GGI-LPPLIGNFSASLQNIYAFECKLGGSIPKEIGNLRGL--IVLSLGFNDL--NGTIPTSIGTLQ-------------- 141 (717)
Q Consensus 81 ~~~-~~~~~~~l~~~L~~L~l~~n~l~~~~~~~~~~l~~L--~~L~L~~n~l--~~~~~~~~~~l~-------------- 141 (717)
++. .|..|.++ ++|++|++++|++... .+..+++| ++|+|++|.+ ++..|..|..+.
T Consensus 134 ~~l~~p~~~~~l-~~L~~L~L~~n~l~~~---~~~~l~~L~L~~L~L~~n~l~~~~~~~~~l~~l~~~~l~l~l~~n~~~ 209 (562)
T 3a79_B 134 DVLPVCKEFGNL-TKLTFLGLSAAKFRQL---DLLPVAHLHLSCILLDLVSYHIKGGETESLQIPNTTVLHLVFHPNSLF 209 (562)
T ss_dssp SBCCCCGGGGGC-TTCCEEEEECSBCCTT---TTGGGTTSCEEEEEEEESSCCCCSSSCCEEEECCEEEEEEEECSSSCC
T ss_pred cccCchHhhccc-CcccEEecCCCccccC---chhhhhhceeeEEEeecccccccccCcccccccCcceEEEEecCccch
Confidence 974 36788888 6799999999999853 45555555 9999999988 666666655533
Q ss_pred -------------------------------------------------------------------CCCEEeccCCccc
Q 005040 142 -------------------------------------------------------------------QLQGFYVPENNLQ 154 (717)
Q Consensus 142 -------------------------------------------------------------------~L~~L~l~~n~i~ 154 (717)
+|++|++++|.++
T Consensus 210 ~~~~~~~~~~l~~L~~L~l~~n~~~~~~l~~~~~~l~~l~~L~~L~L~~~~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~ 289 (562)
T 3a79_B 210 SVQVNMSVNALGHLQLSNIKLNDENCQRLMTFLSELTRGPTLLNVTLQHIETTWKCSVKLFQFFWPRPVEYLNIYNLTIT 289 (562)
T ss_dssp CCCCEEEESSEEEEEEEEEECCSTTHHHHHHHHHHHHSCSSCEEEEEEEEEECHHHHHHHHHHHTTSSEEEEEEEEEEEC
T ss_pred hhhhhhcccccceEEEecccccccccchHHHHHHHHhccCcceEEEecCCcCcHHHHHHHHHhhhcccccEEEEeccEee
Confidence 6777777777777
Q ss_pred ccCCccc-----------------------------------------------------cCCCCCCEEeccCCcCcccC
Q 005040 155 GYVPHDL-----------------------------------------------------CHLERLNILNLSGNKLSGAI 181 (717)
Q Consensus 155 ~~~~~~~-----------------------------------------------------~~l~~L~~L~L~~n~l~~~~ 181 (717)
+..|..+ ..+++|++|+|++|++++..
T Consensus 290 ~~ip~~~~~~~~~~L~~L~~~~~~~~~~~~p~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~l~~L~~L~l~~n~l~~~~ 369 (562)
T 3a79_B 290 ERIDREEFTYSETALKSLMIEHVKNQVFLFSKEALYSVFAEMNIKMLSISDTPFIHMVCPPSPSSFTFLNFTQNVFTDSV 369 (562)
T ss_dssp SCCCCCCCCCCSCSCCEEEEEEEEECCCSSCHHHHHHHHHTCCCSEEEEESSCCCCCCCCSSCCCCCEEECCSSCCCTTT
T ss_pred ccccchhhhcccccchheehhhcccceeecChhhhhhhhccCcceEEEccCCCcccccCccCCCCceEEECCCCccccch
Confidence 6555544 67889999999999999888
Q ss_pred CccccCCCCCCeEEecCccccCCC--ChhhhcccCCCeEEccCCcCcc-cCCccccCCCCCCeEEccCCCCCCCCccccc
Q 005040 182 PQCLASLTSLRSLYLQSNKLSSSL--PSSLWSLEYILRINLSSNSLKG-TLPSNIQKLNVLIDLDLSRNQLSSDIPSTIG 258 (717)
Q Consensus 182 ~~~~~~l~~L~~L~L~~N~l~~~~--~~~~~~l~~L~~L~l~~N~l~~-~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~ 258 (717)
|..+.++++|+.|+|++|++++.. |..+..+++|++|++++|.+++ ..+..+..+++|+.|++++|.+++..|..+.
T Consensus 370 ~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~ 449 (562)
T 3a79_B 370 FQGCSTLKRLQTLILQRNGLKNFFKVALMTKNMSSLETLDVSLNSLNSHAYDRTCAWAESILVLNLSSNMLTGSVFRCLP 449 (562)
T ss_dssp TTTCCSCSSCCEEECCSSCCCBTTHHHHTTTTCTTCCEEECTTSCCBSCCSSCCCCCCTTCCEEECCSSCCCGGGGSSCC
T ss_pred hhhhcccCCCCEEECCCCCcCCcccchhhhcCCCCCCEEECCCCcCCCccChhhhcCcccCCEEECCCCCCCcchhhhhc
Confidence 999999999999999999999633 4678999999999999999998 4445689999999999999999976665544
Q ss_pred CCcccccccccCccccCCCCccccccCccceEeccCCCCCCCCcccccccccccEEEccCCccccccccccc
Q 005040 259 TLKNLETLSLAGNQFQGPIPESVGNLISLESLDFSNNNLSGKIPKSLEALSHLKQFNVSHNRLEGEIPVKGS 330 (717)
Q Consensus 259 ~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~~~~~~~~~~l~~L~~L~l~~N~l~~~~p~~~~ 330 (717)
++|++|++++|+++ .+|..+..+++|+.|+|++|++++..+..+..+++|+.|++++|++.|.++....
T Consensus 450 --~~L~~L~L~~N~l~-~ip~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~l~~N~~~c~c~~~~~ 518 (562)
T 3a79_B 450 --PKVKVLDLHNNRIM-SIPKDVTHLQALQELNVASNQLKSVPDGVFDRLTSLQYIWLHDNPWDCTCPGIRY 518 (562)
T ss_dssp --TTCSEEECCSSCCC-CCCTTTTSSCCCSEEECCSSCCCCCCTTSTTTCTTCCCEECCSCCBCCCHHHHHH
T ss_pred --CcCCEEECCCCcCc-ccChhhcCCCCCCEEECCCCCCCCCCHHHHhcCCCCCEEEecCCCcCCCcchHHH
Confidence 79999999999999 6777777999999999999999954444499999999999999999999886543
No 264
>2iwi_A Serine/threonine-protein kinase PIM-2; nucleotide-binding, cancer, leukemia, transferase, ATP-binding, proto- oncogene, phosphorylation; HET: HB1; 2.80A {Homo sapiens}
Probab=100.00 E-value=5.9e-38 Score=325.64 Aligned_cols=245 Identities=25% Similarity=0.313 Sum_probs=190.6
Q ss_pred HHHHHhccCCccccccccccEEEEEEEec-CCCeEEEEEechhhH------HHHHHHHHHHHHHHhc----CCCceeeEe
Q 005040 421 DIRRATDEFNECNLLGTGGFGSVYKGTLS-DGTNVAIKIFNLQLE------RAFRSFDSECEILRNV----RHRNLLKIL 489 (717)
Q Consensus 421 ~~~~~~~~~~~~~~lg~G~~g~V~~~~~~-~~~~vavK~~~~~~~------~~~~~~~~e~~~l~~l----~hpniv~~~ 489 (717)
+.....++|++.+.||+|+||.||+|... +++.||||++..... .....+.+|+++++++ +||||++++
T Consensus 25 ~~~~~~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~~~~e~~~l~~l~~~~~h~~i~~~~ 104 (312)
T 2iwi_A 25 DREAFEAEYRLGPLLGKGGFGTVFAGHRLTDRLQVAIKVIPRNRVLGWSPLSDSVTCPLEVALLWKVGAGGGHPGVIRLL 104 (312)
T ss_dssp --------CEEEEEEEEETTEEEEEEECTTTCCEEEEEECCSTTTC--------CCCCHHHHHHHHHHSSCCCSSBCCEE
T ss_pred chhhhhhceEEeeEEEcCCCEEEEEEEEccCCeEEEEEEEecccccccccchhhHHHHHHHHHHHhhcccCCCCCeeeEE
Confidence 34455688999999999999999999874 789999999965431 1223456799999999 899999999
Q ss_pred eeeecCCeeEEEEEc-cCCCCHHHHHhhCCCCCCHHHHHHHHHHHHHHHHHHhhcCCCCCeEecCCCCCCeeeC-CCCcE
Q 005040 490 GSCSNLDFKALVLEF-MPNGSLEKWLYSHNYFLDILQRLNIMIDVGSALEYLHHCHSSAPIIHCDLKPTNILLD-ENMVA 567 (717)
Q Consensus 490 ~~~~~~~~~~lv~e~-~~~g~L~~~l~~~~~~~~~~~~~~i~~~i~~~l~~LH~~~~~~~ivH~dlk~~Nill~-~~~~~ 567 (717)
+++.+.+..++|||| +.+++|.+++.... .+++..+..++.|+++||.||| +.+|+||||||+||+++ .++.+
T Consensus 105 ~~~~~~~~~~~v~e~~~~~~~L~~~l~~~~-~~~~~~~~~~~~qi~~~l~~lH----~~~i~H~dlkp~Nil~~~~~~~~ 179 (312)
T 2iwi_A 105 DWFETQEGFMLVLERPLPAQDLFDYITEKG-PLGEGPSRCFFGQVVAAIQHCH----SRGVVHRDIKDENILIDLRRGCA 179 (312)
T ss_dssp EEC-----CEEEEECCSSEEEHHHHHHHHC-SCCHHHHHHHHHHHHHHHHHHH----HHTEECCCCSGGGEEEETTTTEE
T ss_pred EEEecCCeEEEEEEecCCCCCHHHHHHhcC-CCCHHHHHHHHHHHHHHHHHHH----HCCeeecCCChhhEEEeCCCCeE
Confidence 999999999999999 78999999998754 4899999999999999999999 57899999999999999 89999
Q ss_pred EEeeeccccccCCCCCceeeeccccCccccCCCccCCCCc-CcccchhhHHHHHHHHHhCCCCCCccccCcchHHHHHHh
Q 005040 568 HVSDFGISKLLGEGEDSVIQTMTMATIGYMAPEYGSEGIV-STKCDVYSYGVLLMETFTEKKPTDEMFTGEMSLRRWVKE 646 (717)
Q Consensus 568 kl~Dfgl~~~~~~~~~~~~~~~~~~t~~y~aPE~~~~~~~-~~~~Dvws~G~il~el~tg~~p~~~~~~~~~~~~~~~~~ 646 (717)
||+|||++....... .....||..|+|||++.+..+ +.++||||+|+++|||++|+.||.... .....
T Consensus 180 kl~dfg~~~~~~~~~----~~~~~~~~~y~aPE~~~~~~~~~~~~Di~slG~il~~l~~g~~pf~~~~-------~~~~~ 248 (312)
T 2iwi_A 180 KLIDFGSGALLHDEP----YTDFDGTRVYSPPEWISRHQYHALPATVWSLGILLYDMVCGDIPFERDQ-------EILEA 248 (312)
T ss_dssp EECCCSSCEECCSSC----BCCCCSCTTTSCHHHHHHSCBCHHHHHHHHHHHHHHHHHHSSCSCCSHH-------HHHHT
T ss_pred EEEEcchhhhcccCc----ccccCCcccccCceeeecCCCCCccchHHHHHHHHHHHHHCCCCCCChH-------HHhhh
Confidence 999999998765432 234468999999998776665 458999999999999999999996521 11110
Q ss_pred hCCCchhhhccccchhhhhhhhhhHHHHHHHHHHHhhccCCCCCCCCCHHHHHH
Q 005040 647 SLPHRLTEVVDANLVREEQAFSDKMDCLFSIMDLALDCCMDTPHKRIHMTDAAA 700 (717)
Q Consensus 647 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~cl~~~P~~Rpt~~ev~~ 700 (717)
.. .+ ...++.++.+++.+||+.||++|||+.|+++
T Consensus 249 ~~----------~~---------~~~~~~~~~~li~~~l~~~p~~Rps~~e~l~ 283 (312)
T 2iwi_A 249 EL----------HF---------PAHVSPDCCALIRRCLAPKPSSRPSLEEILL 283 (312)
T ss_dssp CC----------CC---------CTTSCHHHHHHHHHHTCSSTTTSCCHHHHHH
T ss_pred cc----------CC---------cccCCHHHHHHHHHHccCChhhCcCHHHHhc
Confidence 00 00 0123456789999999999999999999986
No 265
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=100.00 E-value=8.8e-37 Score=344.49 Aligned_cols=191 Identities=21% Similarity=0.246 Sum_probs=163.1
Q ss_pred cCCCCEEeccCCcccccC--CccccCCCCCCEEeccCCcCcccCCccccCCCCCCeEEecCccccCCCC-hhhhcccCCC
Q 005040 140 LQQLQGFYVPENNLQGYV--PHDLCHLERLNILNLSGNKLSGAIPQCLASLTSLRSLYLQSNKLSSSLP-SSLWSLEYIL 216 (717)
Q Consensus 140 l~~L~~L~l~~n~i~~~~--~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~-~~~~~l~~L~ 216 (717)
+++|++|++++|.+++.. +..+.++++|++|++++|.+.+..+. +..+++|++|++++|.+.+..+ ..+..+++|+
T Consensus 346 ~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~-~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~ 424 (570)
T 2z63_A 346 LPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSN-FLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLI 424 (570)
T ss_dssp CTTCCEEECCSSCCBEEEEEEHHHHTCSCCCEEECCSCSEEEEEEE-EETCTTCCEEECTTSEEESCTTSCTTTTCTTCC
T ss_pred CCCCCEEeCcCCccCccccccccccccCccCEEECCCCcccccccc-ccccCCCCEEEccCCccccccchhhhhcCCCCC
Confidence 344445555555554332 44566677778888888877754444 8999999999999999997665 5789999999
Q ss_pred eEEccCCcCcccCCccccCCCCCCeEEccCCCCC-CCCcccccCCcccccccccCccccCCCCccccccCccceEeccCC
Q 005040 217 RINLSSNSLKGTLPSNIQKLNVLIDLDLSRNQLS-SDIPSTIGTLKNLETLSLAGNQFQGPIPESVGNLISLESLDFSNN 295 (717)
Q Consensus 217 ~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~-~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~L~~N 295 (717)
+|++++|.+.+..|..+.++++|+.|++++|.++ +.+|..+..+++|++|++++|++++..|..+.++++|++|+|++|
T Consensus 425 ~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n 504 (570)
T 2z63_A 425 YLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMASN 504 (570)
T ss_dssp EEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSS
T ss_pred EEeCcCCcccccchhhhhcCCcCcEEECcCCcCccccchhhhhcccCCCEEECCCCccccCChhhhhcccCCCEEeCCCC
Confidence 9999999999999999999999999999999998 468889999999999999999999888999999999999999999
Q ss_pred CCCCCCcccccccccccEEEccCCcccccccccccc
Q 005040 296 NLSGKIPKSLEALSHLKQFNVSHNRLEGEIPVKGSF 331 (717)
Q Consensus 296 ~~~~~~~~~~~~l~~L~~L~l~~N~l~~~~p~~~~~ 331 (717)
++++..+..+..+++|+.|++++|+++|.+|....+
T Consensus 505 ~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~~~~~~ 540 (570)
T 2z63_A 505 QLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPRIDYL 540 (570)
T ss_dssp CCSCCCTTTTTTCTTCCEEECCSSCBCCCTTTTHHH
T ss_pred cCCCCCHHHhhcccCCcEEEecCCcccCCCcchHHH
Confidence 999988889999999999999999999999875443
No 266
>2rio_A Serine/threonine-protein kinase/endoribonuclease IRE1; protein-nucleotide complex, ATP-binding, endoplasmic reticulum, glycoprotein; HET: ADP; 2.40A {Saccharomyces cerevisiae} PDB: 3lj0_A* 3lj1_A* 3lj2_A* 3fbv_A* 3sdm_A* 3sdj_A*
Probab=100.00 E-value=1.5e-37 Score=336.77 Aligned_cols=250 Identities=24% Similarity=0.315 Sum_probs=186.6
Q ss_pred cCCccccccccccEEEEEEEecCCCeEEEEEechhhHHHHHHHHHHHHHHHhc-CCCceeeEeeeeecCCeeEEEEEccC
Q 005040 428 EFNECNLLGTGGFGSVYKGTLSDGTNVAIKIFNLQLERAFRSFDSECEILRNV-RHRNLLKILGSCSNLDFKALVLEFMP 506 (717)
Q Consensus 428 ~~~~~~~lg~G~~g~V~~~~~~~~~~vavK~~~~~~~~~~~~~~~e~~~l~~l-~hpniv~~~~~~~~~~~~~lv~e~~~ 506 (717)
.|...+.||+|+||+||.+...+|+.||||++.... .+.+.+|+++++++ +||||+++++++.+.+..++||||+.
T Consensus 16 ~~~~~~~LG~G~~g~V~~~~~~~g~~vAvK~~~~~~---~~~~~~E~~~l~~l~~HpnIv~~~~~~~~~~~~~lv~E~~~ 92 (434)
T 2rio_A 16 LVVSEKILGYGSSGTVVFQGSFQGRPVAVKRMLIDF---CDIALMEIKLLTESDDHPNVIRYYCSETTDRFLYIALELCN 92 (434)
T ss_dssp CEEEEEEEEECSTTCEEEEEESSSSEEEEEEEEGGG---HHHHHHHHHHHHHHTTSTTBCCEEEEEECSSEEEEEECCCS
T ss_pred eeeccCeEeeCCCeEEEEEEEECCeEEEEEEEcHHH---HHHHHHHHHHHHhccCCCCcCeEEEEEecCCeEEEEEecCC
Confidence 445567899999999987766689999999987543 24567899999987 89999999999999999999999996
Q ss_pred CCCHHHHHhhCCCC------CCHHHHHHHHHHHHHHHHHHhhcCCCCCeEecCCCCCCeeeCCC-------------CcE
Q 005040 507 NGSLEKWLYSHNYF------LDILQRLNIMIDVGSALEYLHHCHSSAPIIHCDLKPTNILLDEN-------------MVA 567 (717)
Q Consensus 507 ~g~L~~~l~~~~~~------~~~~~~~~i~~~i~~~l~~LH~~~~~~~ivH~dlk~~Nill~~~-------------~~~ 567 (717)
|+|.+++...... .++..+..++.|++.||+||| +.+|+||||||+||+++.+ +.+
T Consensus 93 -gsL~~~l~~~~~~~~~~~~~~~~~~~~i~~qi~~aL~~LH----~~~ivHrDLkp~NILl~~~~~~~~~~~~~~~~~~~ 167 (434)
T 2rio_A 93 -LNLQDLVESKNVSDENLKLQKEYNPISLLRQIASGVAHLH----SLKIIHRDLKPQNILVSTSSRFTADQQTGAENLRI 167 (434)
T ss_dssp -EEHHHHHHTC------------CCHHHHHHHHHHHHHHHH----HTTEECCCCSGGGEEEECCHHHHSCCTTCCCSCEE
T ss_pred -CCHHHHHhccCCCchhhhhccchhHHHHHHHHHHHHHHHH----HCCccccCCChHhEEEecCcccccccccCCCceEE
Confidence 6999999865321 123345779999999999999 6789999999999999754 489
Q ss_pred EEeeeccccccCCCCCce--eeeccccCccccCCCccCC-------CCcCcccchhhHHHHHHHHHh-CCCCCCccccCc
Q 005040 568 HVSDFGISKLLGEGEDSV--IQTMTMATIGYMAPEYGSE-------GIVSTKCDVYSYGVLLMETFT-EKKPTDEMFTGE 637 (717)
Q Consensus 568 kl~Dfgl~~~~~~~~~~~--~~~~~~~t~~y~aPE~~~~-------~~~~~~~Dvws~G~il~el~t-g~~p~~~~~~~~ 637 (717)
||+|||++.......... ......||++|+|||++.+ ..++.++|||||||++|||++ |+.||.......
T Consensus 168 kL~DFG~a~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~~~~~~~DiwSlG~il~ellt~g~~Pf~~~~~~~ 247 (434)
T 2rio_A 168 LISDFGLCKKLDSGQSSFRTNLNNPSGTSGWRAPELLEESNNLQTKRRLTRSIDIFSMGCVFYYILSKGKHPFGDKYSRE 247 (434)
T ss_dssp EECCCTTCEECCC--------------CCTTSCHHHHSCCCTTSCCCCCCTHHHHHHHHHHHHHHHTTSCCTTCSTTTHH
T ss_pred EEcccccceecCCCCccceeeecCCCCCCCccCHHHhccccccccccCcchhhhhHhHHHHHHHHHhCCCCCCCCchhhH
Confidence 999999998875433211 1234579999999998765 678999999999999999999 999997532221
Q ss_pred chHHHHHHhhCCCchhhhccccchhhhhhhhhhHHHHHHHHHHHhhccCCCCCCCCCHHHHHH
Q 005040 638 MSLRRWVKESLPHRLTEVVDANLVREEQAFSDKMDCLFSIMDLALDCCMDTPHKRIHMTDAAA 700 (717)
Q Consensus 638 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~cl~~~P~~Rpt~~ev~~ 700 (717)
........... . . .......++.++.+++.+||+.||++|||+.|+++
T Consensus 248 ---~~i~~~~~~~~--~-----~-----~~~~~~~~~~~~~~li~~~L~~dP~~Rps~~eil~ 295 (434)
T 2rio_A 248 ---SNIIRGIFSLD--E-----M-----KCLHDRSLIAEATDLISQMIDHDPLKRPTAMKVLR 295 (434)
T ss_dssp ---HHHHHTCCCCC--C-----C-----TTCCCHHHHHHHHHHHHHHTCSSGGGSCCHHHHHT
T ss_pred ---HHHhcCCCCcc--c-----c-----cccccccchHHHHHHHHHHhhCChhhCCCHHHHHh
Confidence 11211111100 0 0 00112245677899999999999999999999985
No 267
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=100.00 E-value=1.4e-36 Score=338.73 Aligned_cols=310 Identities=21% Similarity=0.244 Sum_probs=251.5
Q ss_pred CCCC-ccccCCCCCcEEECCCCcceecCCcCCCCCCCCCEEEcccccccCccCCcccccccccccCccCCcEEeccCCCC
Q 005040 2 GTIP-NSITNATKLIGLDLGLNSFSGHIPNTFGNLRHLSVLSLMMNNLTTESSSADQWSFLSSLTNCRNLANLALASNPL 80 (717)
Q Consensus 2 ~~iP-~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~l~~l~~L~~L~L~~N~l 80 (717)
..+| ..|.++++|++|+|++|+|++..|+.|.++++|++|+|++|+|+.++. . .+++|++|+|++|++
T Consensus 34 ~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~lp~----------~-~l~~L~~L~L~~N~l 102 (520)
T 2z7x_B 34 SELWTSDILSLSKLRILIISHNRIQYLDISVFKFNQELEYLDLSHNKLVKISC----------H-PTVNLKHLDLSFNAF 102 (520)
T ss_dssp CCCCHHHHTTCTTCCEEECCSSCCCEEEGGGGTTCTTCCEEECCSSCCCEEEC----------C-CCCCCSEEECCSSCC
T ss_pred cccChhhccccccccEEecCCCccCCcChHHhhcccCCCEEecCCCceeecCc----------c-ccCCccEEeccCCcc
Confidence 3455 689999999999999999999989999999999999999999998763 2 688899999999988
Q ss_pred ccc-CCcchhccccccceeeecCCcceecCCccccCCCCC--cEEEccCCCC--cccCCccccccC--------------
Q 005040 81 GGI-LPPLIGNFSASLQNIYAFECKLGGSIPKEIGNLRGL--IVLSLGFNDL--NGTIPTSIGTLQ-------------- 141 (717)
Q Consensus 81 ~~~-~~~~~~~l~~~L~~L~l~~n~l~~~~~~~~~~l~~L--~~L~L~~n~l--~~~~~~~~~~l~-------------- 141 (717)
++. .|..+..+ ++|++|++++|++.+ ..+..+++| ++|+|++|.+ .+..|..+..+.
T Consensus 103 ~~~~~p~~~~~l-~~L~~L~L~~n~l~~---~~~~~l~~L~L~~L~l~~n~l~~~~~~~~~l~~l~~~~l~l~l~~n~~~ 178 (520)
T 2z7x_B 103 DALPICKEFGNM-SQLKFLGLSTTHLEK---SSVLPIAHLNISKVLLVLGETYGEKEDPEGLQDFNTESLHIVFPTNKEF 178 (520)
T ss_dssp SSCCCCGGGGGC-TTCCEEEEEESSCCG---GGGGGGTTSCEEEEEEEECTTTTSSCCTTTTTTCCEEEEEEECCSSSCC
T ss_pred ccccchhhhccC-CcceEEEecCcccch---hhccccccceeeEEEeecccccccccccccccccccceEEEEeccCcch
Confidence 873 57788877 578888888888764 344555555 6666666665 333443333321
Q ss_pred ---------------------------------------------------------------------CCCEEeccCCc
Q 005040 142 ---------------------------------------------------------------------QLQGFYVPENN 152 (717)
Q Consensus 142 ---------------------------------------------------------------------~L~~L~l~~n~ 152 (717)
+|++|++++|+
T Consensus 179 ~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~~~~~~~~~~L~~L~l~~n~ 258 (520)
T 2z7x_B 179 HFILDVSVKTVANLELSNIKCVLEDNKCSYFLSILAKLQTNPKLSNLTLNNIETTWNSFIRILQLVWHTTVWYFSISNVK 258 (520)
T ss_dssp CCCCCCCCTTCSEEEECCEEECCSTTTTHHHHHHHHGGGGCTTCCEEEEEEEEEEHHHHHHHHHHHHTSSCSEEEEEEEE
T ss_pred hhhhhhhhhcccceeeccccccccccccceeecchhhhccccchhhccccccccCHHHHHHHHHHhhhCcccEEEeeccc
Confidence 45555555555
Q ss_pred ccccCCccc-----------------------------------------------------cCCCCCCEEeccCCcCcc
Q 005040 153 LQGYVPHDL-----------------------------------------------------CHLERLNILNLSGNKLSG 179 (717)
Q Consensus 153 i~~~~~~~~-----------------------------------------------------~~l~~L~~L~L~~n~l~~ 179 (717)
+++..|..+ ..+++|++|+|++|++++
T Consensus 259 l~~~~p~~~~~~~~~~l~~L~~l~l~~n~~~~p~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~l~~L~~L~Ls~n~l~~ 338 (520)
T 2z7x_B 259 LQGQLDFRDFDYSGTSLKALSIHQVVSDVFGFPQSYIYEIFSNMNIKNFTVSGTRMVHMLCPSKISPFLHLDFSNNLLTD 338 (520)
T ss_dssp EESCCCCCCCCCCSCCCCEEEEEEEEECCCCSCTHHHHHHHHTCCCSEEEEESSCCCCCCCCSSCCCCCEEECCSSCCCT
T ss_pred ccCccccchhhcccccCceeEeccccccceecchhhhhcccccCceeEEEcCCCccccccchhhCCcccEEEeECCccCh
Confidence 554444333 678899999999999998
Q ss_pred cCCccccCCCCCCeEEecCccccC--CCChhhhcccCCCeEEccCCcCcccCCc-cccCCCCCCeEEccCCCCCCCCccc
Q 005040 180 AIPQCLASLTSLRSLYLQSNKLSS--SLPSSLWSLEYILRINLSSNSLKGTLPS-NIQKLNVLIDLDLSRNQLSSDIPST 256 (717)
Q Consensus 180 ~~~~~~~~l~~L~~L~L~~N~l~~--~~~~~~~~l~~L~~L~l~~N~l~~~~~~-~~~~l~~L~~L~l~~N~l~~~~~~~ 256 (717)
..|..+..+++|++|+|++|++++ .+|..+..+++|++|++++|.+++.+|. .+..+++|+.|++++|.+++..|..
T Consensus 339 ~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~l~~L~~L~Ls~N~l~~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~ 418 (520)
T 2z7x_B 339 TVFENCGHLTELETLILQMNQLKELSKIAEMTTQMKSLQQLDISQNSVSYDEKKGDCSWTKSLLSLNMSSNILTDTIFRC 418 (520)
T ss_dssp TTTTTCCCCSSCCEEECCSSCCCBHHHHHHHHTTCTTCCEEECCSSCCBCCGGGCSCCCCTTCCEEECCSSCCCGGGGGS
T ss_pred hhhhhhccCCCCCEEEccCCccCccccchHHHhhCCCCCEEECCCCcCCcccccchhccCccCCEEECcCCCCCcchhhh
Confidence 889999999999999999999996 4567899999999999999999974554 5899999999999999999877665
Q ss_pred ccCCcccccccccCccccCCCCccccccCccceEeccCCCCCCCCcccccccccccEEEccCCcccccccccc
Q 005040 257 IGTLKNLETLSLAGNQFQGPIPESVGNLISLESLDFSNNNLSGKIPKSLEALSHLKQFNVSHNRLEGEIPVKG 329 (717)
Q Consensus 257 ~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~~~~~~~~~~l~~L~~L~l~~N~l~~~~p~~~ 329 (717)
+. ++|++|++++|+++ .+|..+..+++|++|+|++|+++...+..+..+++|+.|++++|+++|.++...
T Consensus 419 l~--~~L~~L~Ls~N~l~-~ip~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~l~~N~~~c~c~~~~ 488 (520)
T 2z7x_B 419 LP--PRIKVLDLHSNKIK-SIPKQVVKLEALQELNVASNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPRID 488 (520)
T ss_dssp CC--TTCCEEECCSSCCC-CCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCBCCCHHHHH
T ss_pred hc--ccCCEEECCCCccc-ccchhhhcCCCCCEEECCCCcCCccCHHHhccCCcccEEECcCCCCcccCCchH
Confidence 54 79999999999999 788888899999999999999995444459999999999999999999887543
No 268
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=100.00 E-value=2.6e-36 Score=354.76 Aligned_cols=312 Identities=20% Similarity=0.239 Sum_probs=270.8
Q ss_pred CCCCCccccCCCCCcEEECCCCcceecCCcCCCCCCCCCEEEccccc-ccCccCCcccccccccccCccCCcEEeccCCC
Q 005040 1 MGTIPNSITNATKLIGLDLGLNSFSGHIPNTFGNLRHLSVLSLMMNN-LTTESSSADQWSFLSSLTNCRNLANLALASNP 79 (717)
Q Consensus 1 ~~~iP~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~~~~~~l~~l~~L~~L~L~~N~ 79 (717)
++.||. -.++|++|||++|.|+++.|..|.++++|++|+|++|. +..+++. .|.++++|++|+|++|.
T Consensus 16 L~~vP~---lp~~l~~LdLs~N~i~~i~~~~~~~l~~L~~LdLs~n~~~~~i~~~--------~f~~L~~L~~L~Ls~N~ 84 (844)
T 3j0a_A 16 LTQVPQ---VLNTTERLLLSFNYIRTVTASSFPFLEQLQLLELGSQYTPLTIDKE--------AFRNLPNLRILDLGSSK 84 (844)
T ss_dssp SSCCCS---SCTTCCEEEEESCCCCEECSSSCSSCCSCSEEEECTTCCCCEECTT--------TTSSCTTCCEEECTTCC
T ss_pred CCCCCC---CCCCcCEEECCCCcCCccChhHCcccccCeEEeCCCCCCccccCHH--------HhcCCCCCCEEECCCCc
Confidence 467887 45789999999999999999999999999999999994 4444443 38999999999999999
Q ss_pred CcccCCcchhccccccceeeecCCcceecCCcc--ccCCCCCcEEEccCCCCcccCC-ccccccCCCCEEeccCCccccc
Q 005040 80 LGGILPPLIGNFSASLQNIYAFECKLGGSIPKE--IGNLRGLIVLSLGFNDLNGTIP-TSIGTLQQLQGFYVPENNLQGY 156 (717)
Q Consensus 80 l~~~~~~~~~~l~~~L~~L~l~~n~l~~~~~~~--~~~l~~L~~L~L~~n~l~~~~~-~~~~~l~~L~~L~l~~n~i~~~ 156 (717)
+.+..|..|..+ ++|++|+|++|++.+..|.. |.++++|++|+|++|.+++..+ ..|+++++|++|+|++|.+++.
T Consensus 85 l~~~~p~~~~~l-~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~L~~L~~L~Ls~N~i~~~ 163 (844)
T 3j0a_A 85 IYFLHPDAFQGL-FHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLV 163 (844)
T ss_dssp CCEECTTSSCSC-SSCCCEECTTCCCSSCCSTTCCCSSCSSCCEEEEESCCCCCCCCCGGGGTCSSCCEEEEESSCCCCC
T ss_pred CcccCHhHccCC-cccCEeeCcCCCCCcccccCccccccCCCCEEECCCCcccccccchhHhhCCCCCEEECCCCcCCee
Confidence 999989999988 67999999999999866665 9999999999999999987655 5799999999999999999998
Q ss_pred CCccccCC--CCCCEEeccCCcCcccCCccccCCCC------CCeEEecCccccCCCChhhhc-----------------
Q 005040 157 VPHDLCHL--ERLNILNLSGNKLSGAIPQCLASLTS------LRSLYLQSNKLSSSLPSSLWS----------------- 211 (717)
Q Consensus 157 ~~~~~~~l--~~L~~L~L~~n~l~~~~~~~~~~l~~------L~~L~L~~N~l~~~~~~~~~~----------------- 211 (717)
.+..+..+ ++|+.|+|++|.+.+..+..++.+++ |+.|+|++|.+++..+..+..
T Consensus 164 ~~~~l~~l~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~~l~~L~l~~~~~ 243 (844)
T 3j0a_A 164 CEHELEPLQGKTLSFFSLAANSLYSRVSVDWGKCMNPFRNMVLEILDVSGNGWTVDITGNFSNAISKSQAFSLILAHHIM 243 (844)
T ss_dssp CSGGGHHHHHCSSCCCEECCSBSCCCCCCCCCSSSCTTTTCCBSEEBCSSCCSSTTTTSGGGGTSCSCCBSEEECCSSCC
T ss_pred CHHHcccccCCccceEECCCCccccccccchhhcCCccccCceeEEecCCCcCchhHHHHHHhhcCcccccceecccccc
Confidence 88888877 89999999999998877776666655 899999999877655544432
Q ss_pred ---------------------ccCCCeEEccCCcCcccCCccccCCCCCCeEEccCCCCCCCCcccccCCcccccccccC
Q 005040 212 ---------------------LEYILRINLSSNSLKGTLPSNIQKLNVLIDLDLSRNQLSSDIPSTIGTLKNLETLSLAG 270 (717)
Q Consensus 212 ---------------------l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~ 270 (717)
.++|+.|++++|.+.+..+..|..+++|+.|+|++|.+++..+..|..+++|++|+|++
T Consensus 244 ~~~~~~~~l~~~~~~~f~~l~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~ 323 (844)
T 3j0a_A 244 GAGFGFHNIKDPDQNTFAGLARSSVRHLDLSHGFVFSLNSRVFETLKDLKVLNLAYNKINKIADEAFYGLDNLQVLNLSY 323 (844)
T ss_dssp BCSSSCSSSTTGGGTTTTTTTTSCCCEEECTTCCCCEECSCCSSSCCCCCEEEEESCCCCEECTTTTTTCSSCCEEEEES
T ss_pred cccccccccCCCChhhhhccccCCccEEECCCCcccccChhhhhcCCCCCEEECCCCcCCCCChHHhcCCCCCCEEECCC
Confidence 26789999999999988888899999999999999999988888899999999999999
Q ss_pred ccccCCCCccccccCccceEeccCCCCCCCCcccccccccccEEEccCCccccc
Q 005040 271 NQFQGPIPESVGNLISLESLDFSNNNLSGKIPKSLEALSHLKQFNVSHNRLEGE 324 (717)
Q Consensus 271 N~l~~~~~~~~~~l~~L~~L~L~~N~~~~~~~~~~~~l~~L~~L~l~~N~l~~~ 324 (717)
|++++..+..|.++++|+.|+|++|++.+..+..|..+++|+.|+|++|.+++.
T Consensus 324 N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~i 377 (844)
T 3j0a_A 324 NLLGELYSSNFYGLPKVAYIDLQKNHIAIIQDQTFKFLEKLQTLDLRDNALTTI 377 (844)
T ss_dssp CCCSCCCSCSCSSCTTCCEEECCSCCCCCCCSSCSCSCCCCCEEEEETCCSCCC
T ss_pred CCCCccCHHHhcCCCCCCEEECCCCCCCccChhhhcCCCCCCEEECCCCCCCcc
Confidence 999888888999999999999999999888888899999999999999998753
No 269
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=100.00 E-value=9.7e-36 Score=343.03 Aligned_cols=316 Identities=19% Similarity=0.210 Sum_probs=272.2
Q ss_pred CCccccCCCCCcEEECCCCcceecCCcCCCC---------------------------------CCCCCEEEcccccccC
Q 005040 4 IPNSITNATKLIGLDLGLNSFSGHIPNTFGN---------------------------------LRHLSVLSLMMNNLTT 50 (717)
Q Consensus 4 iP~~~~~l~~L~~L~L~~n~i~~~~~~~~~~---------------------------------l~~L~~L~L~~n~l~~ 50 (717)
.|..|..+++|++|+|++|++++..|..|.+ +++|++|+|++|+++.
T Consensus 264 ~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~lp~i~~~~~~~l~~L~~L~l~~n~l~~ 343 (680)
T 1ziw_A 264 GNDSFAWLPQLEYFFLEYNNIQHLFSHSLHGLFNVRYLNLKRSFTKQSISLASLPKIDDFSFQWLKCLEHLNMEDNDIPG 343 (680)
T ss_dssp CTTTTTTCTTCCEEECCSCCBSEECTTTTTTCTTCCEEECTTCBCCC------CCEECTTTTTTCTTCCEEECCSCCBCC
T ss_pred CcccccCcccccEeeCCCCccCccChhhhcCCCCccEEeccchhhhcccccccccccChhhcccCCCCCEEECCCCccCC
Confidence 3567888888888888888888777665554 4555555556666666
Q ss_pred ccCCcccccccccccCccCCcEEeccCCCCc--ccCCcchhccc-cccceeeecCCcceecCCccccCCCCCcEEEccCC
Q 005040 51 ESSSADQWSFLSSLTNCRNLANLALASNPLG--GILPPLIGNFS-ASLQNIYAFECKLGGSIPKEIGNLRGLIVLSLGFN 127 (717)
Q Consensus 51 ~~~~~~~~~~~~~l~~l~~L~~L~L~~N~l~--~~~~~~~~~l~-~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n 127 (717)
+++. .|.++++|++|+|++|.+. ......+..+. .+|+.|++++|++.+..|..|..+++|++|+|++|
T Consensus 344 ~~~~--------~~~~l~~L~~L~Ls~n~~~~~~l~~~~f~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N 415 (680)
T 1ziw_A 344 IKSN--------MFTGLINLKYLSLSNSFTSLRTLTNETFVSLAHSPLHILNLTKNKISKIESDAFSWLGHLEVLDLGLN 415 (680)
T ss_dssp CCTT--------TTTTCTTCCEEECTTCBSCCCEECTTTTGGGTTSCCCEEECTTSCCCEECTTTTTTCTTCCEEECCSS
T ss_pred CChh--------HhccccCCcEEECCCCchhhhhcchhhhcccccCcCceEECCCCCCCeEChhhhhCCCCCCEEeCCCC
Confidence 5543 3889999999999999854 23333444332 47999999999999999999999999999999999
Q ss_pred CCcccCC-ccccccCCCCEEeccCCcccccCCccccCCCCCCEEeccCCcCc--ccCCccccCCCCCCeEEecCccccCC
Q 005040 128 DLNGTIP-TSIGTLQQLQGFYVPENNLQGYVPHDLCHLERLNILNLSGNKLS--GAIPQCLASLTSLRSLYLQSNKLSSS 204 (717)
Q Consensus 128 ~l~~~~~-~~~~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~--~~~~~~~~~l~~L~~L~L~~N~l~~~ 204 (717)
.+++.++ ..|.++++|++|++++|++.+..+..|..+++|+.|++++|.+. +..|..|.++++|+.|+|++|++++.
T Consensus 416 ~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~p~~~~~l~~L~~L~Ls~N~l~~i 495 (680)
T 1ziw_A 416 EIGQELTGQEWRGLENIFEIYLSYNKYLQLTRNSFALVPSLQRLMLRRVALKNVDSSPSPFQPLRNLTILDLSNNNIANI 495 (680)
T ss_dssp CCEEECCSGGGTTCTTCCEEECCSCSEEECCTTTTTTCTTCCEEECTTSCCBCTTCSSCTTTTCTTCCEEECCSSCCCCC
T ss_pred cCccccCcccccCcccccEEecCCCCcceeChhhhhcCcccccchhccccccccccCCcccccCCCCCEEECCCCCCCcC
Confidence 9986555 78999999999999999999999999999999999999999987 46788899999999999999999988
Q ss_pred CChhhhcccCCCeEEccCCcCcccCC--------ccccCCCCCCeEEccCCCCCCCCcccccCCcccccccccCccccCC
Q 005040 205 LPSSLWSLEYILRINLSSNSLKGTLP--------SNIQKLNVLIDLDLSRNQLSSDIPSTIGTLKNLETLSLAGNQFQGP 276 (717)
Q Consensus 205 ~~~~~~~l~~L~~L~l~~N~l~~~~~--------~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~ 276 (717)
.+..|.++++|++|++++|.+++..+ ..|.++++|+.|+|++|.++.+.+..|..+++|+.|+|++|++++.
T Consensus 496 ~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~l 575 (680)
T 1ziw_A 496 NDDMLEGLEKLEILDLQHNNLARLWKHANPGGPIYFLKGLSHLHILNLESNGFDEIPVEVFKDLFELKIIDLGLNNLNTL 575 (680)
T ss_dssp CTTTTTTCTTCCEEECCSSCCGGGGSTTSTTSCCCTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCC
T ss_pred ChhhhccccccCEEeCCCCCccccchhhccCCcchhhcCCCCCCEEECCCCCCCCCCHHHcccccCcceeECCCCCCCcC
Confidence 88889999999999999999986422 2478999999999999999976666899999999999999999988
Q ss_pred CCccccccCccceEeccCCCCCCCCccccc-ccccccEEEccCCcccccccc
Q 005040 277 IPESVGNLISLESLDFSNNNLSGKIPKSLE-ALSHLKQFNVSHNRLEGEIPV 327 (717)
Q Consensus 277 ~~~~~~~l~~L~~L~L~~N~~~~~~~~~~~-~l~~L~~L~l~~N~l~~~~p~ 327 (717)
.+..|.++++|+.|+|++|++++..+..+. .+++|+.|++++|++.|.++.
T Consensus 576 ~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~L~~l~l~~N~~~c~c~~ 627 (680)
T 1ziw_A 576 PASVFNNQVSLKSLNLQKNLITSVEKKVFGPAFRNLTELDMRFNPFDCTCES 627 (680)
T ss_dssp CTTTTTTCTTCCEEECTTSCCCBCCHHHHHHHHTTCSEEECTTCCCCBCCCC
T ss_pred CHhHhCCCCCCCEEECCCCcCCccChhHhcccccccCEEEccCCCcccCCcc
Confidence 788889999999999999999988888887 899999999999999998875
No 270
>3a99_A Proto-oncogene serine/threonine-protein kinase PI; PIM-1, P27KIP1, peptide drug, prostate cancer, transferase; HET: ANP; 1.60A {Homo sapiens} PDB: 3bgq_A* 3bgp_A* 2obj_A* 3bgz_A* 3t9i_A* 3dcv_A* 1xws_A* 2xj1_A* 2xix_A* 2xiz_A* 2xj0_A* 2xiy_A* 2xj2_A* 3f2a_A* 1xr1_A* 1xqz_A* 3cy2_A* 3cxw_A* 3cy3_A* 2bik_B* ...
Probab=100.00 E-value=5.2e-38 Score=326.91 Aligned_cols=241 Identities=23% Similarity=0.264 Sum_probs=198.0
Q ss_pred HhccCCccccccccccEEEEEEEec-CCCeEEEEEechhhHH------HHHHHHHHHHHHHhcC--CCceeeEeeeeecC
Q 005040 425 ATDEFNECNLLGTGGFGSVYKGTLS-DGTNVAIKIFNLQLER------AFRSFDSECEILRNVR--HRNLLKILGSCSNL 495 (717)
Q Consensus 425 ~~~~~~~~~~lg~G~~g~V~~~~~~-~~~~vavK~~~~~~~~------~~~~~~~e~~~l~~l~--hpniv~~~~~~~~~ 495 (717)
..++|++.+.||+|+||.||+|... +++.||||++...... ..+.+.+|+.++++++ ||||+++++++.+.
T Consensus 41 ~~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~~~~~~i~~~~~~~~~~ 120 (320)
T 3a99_A 41 LESQYQVGPLLGSGGFGSVYSGIRVSDNLPVAIKHVEKDRISDWGELPNGTRVPMEVVLLKKVSSGFSGVIRLLDWFERP 120 (320)
T ss_dssp CTTTEEEEEECSSSSSCEEEEEEETTTTEEEEEEEEEGGGCCCEEECTTCCEEEHHHHHHHHHCSSSCSBCCEEEEEECS
T ss_pred ccCceEEEEEEeeCCCeEEEEEEECCCCcEEEEEEEecccchhhhhhhhhhHHHHHHHHHHhhccCCCCceEEEEEEecC
Confidence 4578999999999999999999864 7899999999765321 1234667999999996 59999999999999
Q ss_pred CeeEEEEEccCC-CCHHHHHhhCCCCCCHHHHHHHHHHHHHHHHHHhhcCCCCCeEecCCCCCCeeeC-CCCcEEEeeec
Q 005040 496 DFKALVLEFMPN-GSLEKWLYSHNYFLDILQRLNIMIDVGSALEYLHHCHSSAPIIHCDLKPTNILLD-ENMVAHVSDFG 573 (717)
Q Consensus 496 ~~~~lv~e~~~~-g~L~~~l~~~~~~~~~~~~~~i~~~i~~~l~~LH~~~~~~~ivH~dlk~~Nill~-~~~~~kl~Dfg 573 (717)
+..++|||++.+ ++|.+++.... .+++..+..++.|+++||+||| +.+|+||||||+||+++ .++.+||+|||
T Consensus 121 ~~~~lv~e~~~~~~~L~~~l~~~~-~l~~~~~~~i~~qi~~~L~~LH----~~~ivH~Dlkp~NIll~~~~~~~kL~Dfg 195 (320)
T 3a99_A 121 DSFVLILERPEPVQDLFDFITERG-ALQEELARSFFWQVLEAVRHCH----NCGVLHRDIKDENILIDLNRGELKLIDFG 195 (320)
T ss_dssp SEEEEEEECCSSEEEHHHHHHHHC-SCCHHHHHHHHHHHHHHHHHHH----HTTEECCCCSGGGEEEETTTTEEEECCCT
T ss_pred CcEEEEEEcCCCCccHHHHHhccC-CCCHHHHHHHHHHHHHHHHHHH----HCCcEeCCCCHHHEEEeCCCCCEEEeeCc
Confidence 999999999976 89999998654 4899999999999999999999 67899999999999999 78999999999
Q ss_pred cccccCCCCCceeeeccccCccccCCCccCCCCc-CcccchhhHHHHHHHHHhCCCCCCccccCcchHHHHHHhhCCCch
Q 005040 574 ISKLLGEGEDSVIQTMTMATIGYMAPEYGSEGIV-STKCDVYSYGVLLMETFTEKKPTDEMFTGEMSLRRWVKESLPHRL 652 (717)
Q Consensus 574 l~~~~~~~~~~~~~~~~~~t~~y~aPE~~~~~~~-~~~~Dvws~G~il~el~tg~~p~~~~~~~~~~~~~~~~~~~~~~~ 652 (717)
++....... .....||+.|+|||++.+..+ +.++||||||+++|||++|+.||.... ........
T Consensus 196 ~~~~~~~~~----~~~~~gt~~y~aPE~~~~~~~~~~~~Di~slG~il~el~~g~~pf~~~~-------~~~~~~~~--- 261 (320)
T 3a99_A 196 SGALLKDTV----YTDFDGTRVYSPPEWIRYHRYHGRSAAVWSLGILLYDMVCGDIPFEHDE-------EIIRGQVF--- 261 (320)
T ss_dssp TCEECCSSC----BCCCCSCGGGSCHHHHHHSCBCHHHHHHHHHHHHHHHHHHSSCSCCSHH-------HHHHCCCC---
T ss_pred ccccccccc----ccCCCCCccCCChHHhccCCCCCccchHHhHHHHHHHHHHCCCCCCChh-------hhhccccc---
Confidence 998765322 233468999999998876665 788999999999999999999996521 11110000
Q ss_pred hhhccccchhhhhhhhhhHHHHHHHHHHHhhccCCCCCCCCCHHHHHH
Q 005040 653 TEVVDANLVREEQAFSDKMDCLFSIMDLALDCCMDTPHKRIHMTDAAA 700 (717)
Q Consensus 653 ~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~cl~~~P~~Rpt~~ev~~ 700 (717)
....++.++.+++.+||+.||++|||++|+++
T Consensus 262 ----------------~~~~~~~~~~~li~~~l~~dp~~Rps~~~ll~ 293 (320)
T 3a99_A 262 ----------------FRQRVSSECQHLIRWCLALRPSDRPTFEEIQN 293 (320)
T ss_dssp ----------------CSSCCCHHHHHHHHHHTCSSGGGSCCHHHHHT
T ss_pred ----------------ccccCCHHHHHHHHHHccCChhhCcCHHHHhc
Confidence 00123456889999999999999999999986
No 271
>3p23_A Serine/threonine-protein kinase/endoribonuclease; kinase domain, kinase and RNAse function, ATP binding ssRNA dephosphorylated, hydrolase; HET: ADP; 2.70A {Homo sapiens}
Probab=100.00 E-value=1.9e-37 Score=334.82 Aligned_cols=250 Identities=22% Similarity=0.319 Sum_probs=188.0
Q ss_pred hccCCccccccccccEEEEEEEecCCCeEEEEEechhhHHHHHHHHHHHHHHHhc-CCCceeeEeeeeecCCeeEEEEEc
Q 005040 426 TDEFNECNLLGTGGFGSVYKGTLSDGTNVAIKIFNLQLERAFRSFDSECEILRNV-RHRNLLKILGSCSNLDFKALVLEF 504 (717)
Q Consensus 426 ~~~~~~~~~lg~G~~g~V~~~~~~~~~~vavK~~~~~~~~~~~~~~~e~~~l~~l-~hpniv~~~~~~~~~~~~~lv~e~ 504 (717)
..+|+..+.||+|+||+||.....+++.||||++..... ..+.+|+++++++ +||||+++++++.+....|+||||
T Consensus 23 ~~~y~~~~~LG~G~~G~V~~~~~~~~~~vAvK~~~~~~~---~~~~~E~~~l~~l~~HpnIv~l~~~~~~~~~~~lv~E~ 99 (432)
T 3p23_A 23 KISFCPKDVLGHGAEGTIVYRGMFDNRDVAVKRILPECF---SFADREVQLLRESDEHPNVIRYFCTEKDRQFQYIAIEL 99 (432)
T ss_dssp TEEEEEEEEEEECGGGCEEEEEESSSSEEEEEEECTTTE---EECHHHHHHHHHSCCCTTBCCEEEEEEETTEEEEEEEC
T ss_pred cEEEecCCeeecCcCEEEEEEEEeCCeEEEEEEECHHHH---HHHHHHHHHHHhccCCCCcCeEEEEEecCCEEEEEEEC
Confidence 457889999999999987655556899999999865432 2345799999999 799999999999999999999999
Q ss_pred cCCCCHHHHHhhCCCCCCHHHHHHHHHHHHHHHHHHhhcCCCCCeEecCCCCCCeeeCC-----CCcEEEeeeccccccC
Q 005040 505 MPNGSLEKWLYSHNYFLDILQRLNIMIDVGSALEYLHHCHSSAPIIHCDLKPTNILLDE-----NMVAHVSDFGISKLLG 579 (717)
Q Consensus 505 ~~~g~L~~~l~~~~~~~~~~~~~~i~~~i~~~l~~LH~~~~~~~ivH~dlk~~Nill~~-----~~~~kl~Dfgl~~~~~ 579 (717)
+. |+|.+++.......++..+..++.|++.||.||| +.+|+||||||+||+++. ...+||+|||+++...
T Consensus 100 ~~-g~L~~~l~~~~~~~~~~~~~~i~~qi~~aL~~LH----~~~ivHrDlKp~NIll~~~~~~~~~~~kL~DFG~a~~~~ 174 (432)
T 3p23_A 100 CA-ATLQEYVEQKDFAHLGLEPITLLQQTTSGLAHLH----SLNIVHRDLKPHNILISMPNAHGKIKAMISDFGLCKKLA 174 (432)
T ss_dssp CS-EEHHHHHHSSSCCCCSSCHHHHHHHHHHHHHHHH----HTTCCCCCCSTTSEEECCCBTTTBCCEEECCTTEEECC-
T ss_pred CC-CCHHHHHHhcCCCccchhHHHHHHHHHHHHHHHH----HCcCEeCCCCHHHEEEecCCCCCceeEEEecccceeecc
Confidence 96 6999999877655666667889999999999999 678999999999999953 3368899999998765
Q ss_pred CCCCc-eeeeccccCccccCCCccC---CCCcCcccchhhHHHHHHHHHh-CCCCCCccccCcchHHHHHHhhCCCchhh
Q 005040 580 EGEDS-VIQTMTMATIGYMAPEYGS---EGIVSTKCDVYSYGVLLMETFT-EKKPTDEMFTGEMSLRRWVKESLPHRLTE 654 (717)
Q Consensus 580 ~~~~~-~~~~~~~~t~~y~aPE~~~---~~~~~~~~Dvws~G~il~el~t-g~~p~~~~~~~~~~~~~~~~~~~~~~~~~ 654 (717)
..... .......||++|+|||++. ...++.++||||+||++|||++ |..||...... .......... ..
T Consensus 175 ~~~~~~~~~~~~~gt~~y~APE~l~~~~~~~~t~~~DiwSlG~il~ellt~g~~pf~~~~~~---~~~~~~~~~~---~~ 248 (432)
T 3p23_A 175 VGRHSFSRRSGVPGTEGWIAPEMLSEDCKENPTYTVDIFSAGCVFYYVISEGSHPFGKSLQR---QANILLGACS---LD 248 (432)
T ss_dssp -----------CCSCTTSCCGGGTSCC---CCCTHHHHHHHHHHHHHHHTTSCBTTBSTTTH---HHHHHTTCCC---CT
T ss_pred CCCcceeeccccCCCcCccChhhhhcccccCCCcHHHHHHHHHHHHHHHcCCCCCcchhhHH---HHHHHhccCC---cc
Confidence 43221 2234457999999999887 4667889999999999999999 89998542211 1111100000 00
Q ss_pred hccccchhhhhhhhhhHHHHHHHHHHHhhccCCCCCCCCCHHHHHH
Q 005040 655 VVDANLVREEQAFSDKMDCLFSIMDLALDCCMDTPHKRIHMTDAAA 700 (717)
Q Consensus 655 ~~~~~~~~~~~~~~~~~~~~~~l~~li~~cl~~~P~~Rpt~~ev~~ 700 (717)
.. ......+..+.+++.+||+.||++|||+.||++
T Consensus 249 ~~-----------~~~~~~~~~~~~li~~~L~~dP~~Rps~~evl~ 283 (432)
T 3p23_A 249 CL-----------HPEKHEDVIARELIEKMIAMDPQKRPSAKHVLK 283 (432)
T ss_dssp TS-----------CTTCHHHHHHHHHHHHHSCSSGGGSCCHHHHHT
T ss_pred cc-----------CccccccHHHHHHHHHHHhCCHhhCCCHHHHHh
Confidence 00 111233455789999999999999999999984
No 272
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=100.00 E-value=5e-36 Score=338.82 Aligned_cols=312 Identities=19% Similarity=0.169 Sum_probs=192.3
Q ss_pred cCCCCCcEEECCCCcceecCCcCCCCCCCCCEEEcccccccCccCCcccccccccccCccCCcEEeccCCCCcccCCcch
Q 005040 9 TNATKLIGLDLGLNSFSGHIPNTFGNLRHLSVLSLMMNNLTTESSSADQWSFLSSLTNCRNLANLALASNPLGGILPPLI 88 (717)
Q Consensus 9 ~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~ 88 (717)
.++++|++|+|++|.|+++.|..|.++++|++|+|++|.|+.+++.. |.++++|++|+|++|.+++..+..|
T Consensus 72 ~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~--------~~~l~~L~~L~L~~n~l~~l~~~~~ 143 (597)
T 3oja_B 72 DSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHV--------FQNVPLLTVLVLERNDLSSLPRGIF 143 (597)
T ss_dssp HHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTT--------TTTCTTCCEEECCSSCCCCCCTTTT
T ss_pred ccCCCCcEEECCCCCCCCCChHHhcCCCCCCEEECCCCcCCCCCHHH--------HcCCCCCCEEEeeCCCCCCCCHHHh
Confidence 44555555555555555555555555555555555555555544332 4455555555555555554333334
Q ss_pred hccccccceeeecCCcceecCCccccCCCCCcEEEccCCCCcccCCccccccCCCCEEeccCCcccccCCccccCCCCCC
Q 005040 89 GNFSASLQNIYAFECKLGGSIPKEIGNLRGLIVLSLGFNDLNGTIPTSIGTLQQLQGFYVPENNLQGYVPHDLCHLERLN 168 (717)
Q Consensus 89 ~~l~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~ 168 (717)
..+ ++|++|+|++|.+.+..|..|.++++|++|+|++|.+++. .+..+++|+.|++++|.+++. ....+|+
T Consensus 144 ~~l-~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~---~~~~l~~L~~L~l~~n~l~~l-----~~~~~L~ 214 (597)
T 3oja_B 144 HNT-PKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHV---DLSLIPSLFHANVSYNLLSTL-----AIPIAVE 214 (597)
T ss_dssp TTC-TTCCEEECCSSCCCBCCTTTTTTCTTCCEEECTTSCCSBC---CGGGCTTCSEEECCSSCCSEE-----ECCTTCS
T ss_pred ccC-CCCCEEEeeCCcCCCCChhhhhcCCcCcEEECcCCCCCCc---ChhhhhhhhhhhcccCccccc-----cCCchhh
Confidence 444 3455555555555555555555555555555555555533 134445555555555555432 2334566
Q ss_pred EEeccCCcCcccCCccccCCCCCCeEEecCccccCCCChhhhcccCCCeEEccCCcCcccCCccccCCCCCCeEEccCCC
Q 005040 169 ILNLSGNKLSGAIPQCLASLTSLRSLYLQSNKLSSSLPSSLWSLEYILRINLSSNSLKGTLPSNIQKLNVLIDLDLSRNQ 248 (717)
Q Consensus 169 ~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~ 248 (717)
.|++++|.+....+.. .++|+.|+|++|.+++ +..+..+++|+.|+|++|.+++..|..|..+++|+.|+|++|.
T Consensus 215 ~L~ls~n~l~~~~~~~---~~~L~~L~L~~n~l~~--~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~ 289 (597)
T 3oja_B 215 ELDASHNSINVVRGPV---NVELTILKLQHNNLTD--TAWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNR 289 (597)
T ss_dssp EEECCSSCCCEEECSC---CSCCCEEECCSSCCCC--CGGGGGCTTCSEEECCSSCCCEEESGGGTTCSSCCEEECTTSC
T ss_pred eeeccCCccccccccc---CCCCCEEECCCCCCCC--ChhhccCCCCCEEECCCCccCCCCHHHhcCccCCCEEECCCCC
Confidence 6667776666433222 2577888888888775 3567778888888888888887777788888888888888888
Q ss_pred CCCCCcccccCCcccccccccCccccCCCCccccccCccceEeccCCCCCCCCcccccccccccEEEccCCccccccccc
Q 005040 249 LSSDIPSTIGTLKNLETLSLAGNQFQGPIPESVGNLISLESLDFSNNNLSGKIPKSLEALSHLKQFNVSHNRLEGEIPVK 328 (717)
Q Consensus 249 l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~~~~~~~~~~l~~L~~L~l~~N~l~~~~p~~ 328 (717)
+++ +|..+..+++|+.|+|++|.+. .+|..+..+++|+.|+|++|++++.. +..+++|+.|++++|+++|....
T Consensus 290 l~~-l~~~~~~l~~L~~L~Ls~N~l~-~i~~~~~~l~~L~~L~L~~N~l~~~~---~~~~~~L~~L~l~~N~~~~~~~~- 363 (597)
T 3oja_B 290 LVA-LNLYGQPIPTLKVLDLSHNHLL-HVERNQPQFDRLENLYLDHNSIVTLK---LSTHHTLKNLTLSHNDWDCNSLR- 363 (597)
T ss_dssp CCE-EECSSSCCTTCCEEECCSSCCC-CCGGGHHHHTTCSEEECCSSCCCCCC---CCTTCCCSEEECCSSCEEHHHHH-
T ss_pred CCC-CCcccccCCCCcEEECCCCCCC-ccCcccccCCCCCEEECCCCCCCCcC---hhhcCCCCEEEeeCCCCCChhHH-
Confidence 875 5666667788888888888887 56666777888888888888877542 55677788888888888776433
Q ss_pred ccccccccccccCCccccCC
Q 005040 329 GSFKDFSAQSYFGNYALCGP 348 (717)
Q Consensus 329 ~~~~~~~~~~~~~n~~~c~~ 348 (717)
..+..+....+.++...|+.
T Consensus 364 ~~~~~~~~~~~~~~~~~C~~ 383 (597)
T 3oja_B 364 ALFRNVARPAVDDADQHCKI 383 (597)
T ss_dssp HHTTTCCTTTBCCCCCCCCT
T ss_pred HHHHHHhhhccccccccCCc
Confidence 23444445555666666664
No 273
>3qa8_A MGC80376 protein; kinase ubiquitin-like domain, phosphorylation, kinase domain ubiquitin-like domain, kinase, substrate binding; 3.60A {Xenopus laevis} PDB: 3qad_A* 3rzf_A*
Probab=100.00 E-value=2.4e-37 Score=343.57 Aligned_cols=270 Identities=25% Similarity=0.294 Sum_probs=201.6
Q ss_pred hccCCccccccccccEEEEEEEec-CCCeEEEEEechhh-HHHHHHHHHHHHHHHhcCCCceeeEeeeeec------CCe
Q 005040 426 TDEFNECNLLGTGGFGSVYKGTLS-DGTNVAIKIFNLQL-ERAFRSFDSECEILRNVRHRNLLKILGSCSN------LDF 497 (717)
Q Consensus 426 ~~~~~~~~~lg~G~~g~V~~~~~~-~~~~vavK~~~~~~-~~~~~~~~~e~~~l~~l~hpniv~~~~~~~~------~~~ 497 (717)
.++|++.+.||+|+||.||+|... +|+.||||++.... ....+.+.+|++++++++||||+++++++.. .+.
T Consensus 13 ~grY~i~~~LG~G~fG~Vyla~~~~tg~~VAVKvi~~~~~~~~~~~~~~Ei~iL~~L~HpnIV~l~~v~~~~~~~~~~~~ 92 (676)
T 3qa8_A 13 CGPWEMKERLGTGGFGYVLRWIHQDTGEQVAIKQCRQELSPKNRERWCLEIQIMKKLNHPNVVSAREVPDGLQKLAPNDL 92 (676)
T ss_dssp ----CCCCCCCBCSSSBCCCCCCTTTTCCEEECCCCSCCCHHHHHHHHHHHHHHHHCCBTTBCCEEECCTTTCCCCTTSS
T ss_pred CCCeEEEEEEeeCCCeEEEEEEECCCCcEEEEEEecccCCHHHHHHHHHHHHHHHhCCCCCCCceeeeecccccccCCCe
Confidence 378999999999999999999975 78999999986542 3445678899999999999999999998765 677
Q ss_pred eEEEEEccCCCCHHHHHhhCC--CCCCHHHHHHHHHHHHHHHHHHhhcCCCCCeEecCCCCCCeeeCCCCc---EEEeee
Q 005040 498 KALVLEFMPNGSLEKWLYSHN--YFLDILQRLNIMIDVGSALEYLHHCHSSAPIIHCDLKPTNILLDENMV---AHVSDF 572 (717)
Q Consensus 498 ~~lv~e~~~~g~L~~~l~~~~--~~~~~~~~~~i~~~i~~~l~~LH~~~~~~~ivH~dlk~~Nill~~~~~---~kl~Df 572 (717)
.++||||+++|+|.+++.... ..+++..+..++.|++.||+||| +.+|+||||||+||+++.++. +||+||
T Consensus 93 ~~LVmEy~~ggsL~~~L~~~~~~~~lse~~i~~I~~QLl~aL~yLH----s~gIVHrDLKP~NILl~~~g~~~~vKL~DF 168 (676)
T 3qa8_A 93 PLLAMEYCEGGDLRKYLNQFENCCGLKEGPIRTLLSDISSALRYLH----ENRIIHRDLKPENIVLQPGPQRLIHKIIDL 168 (676)
T ss_dssp CCCEEECCSSCBHHHHHHSSSCTTCCCSSHHHHHHHHHHHHHHHHH----HTTBCCCCCCSTTEEEECCSSSCEEEECSC
T ss_pred EEEEEEeCCCCCHHHHHHhcccCCCCCHHHHHHHHHHHHHHHHHHH----HCCCccCCCCHHHeEeecCCCceeEEEccc
Confidence 899999999999999998643 35888999999999999999999 678999999999999997665 999999
Q ss_pred ccccccCCCCCceeeeccccCccccCCCccCCCCcCcccchhhHHHHHHHHHhCCCCCCccccCcchHHHHHHhhCCCch
Q 005040 573 GISKLLGEGEDSVIQTMTMATIGYMAPEYGSEGIVSTKCDVYSYGVLLMETFTEKKPTDEMFTGEMSLRRWVKESLPHRL 652 (717)
Q Consensus 573 gl~~~~~~~~~~~~~~~~~~t~~y~aPE~~~~~~~~~~~Dvws~G~il~el~tg~~p~~~~~~~~~~~~~~~~~~~~~~~ 652 (717)
|++........ .....||+.|+|||++.+..++.++||||+|+++|||++|+.||.... ....|.........
T Consensus 169 G~a~~~~~~~~---~~~~~gt~~Y~APE~l~~~~~s~ksDIwSLGviLyeLltG~~Pf~~~~----~~~~~~~~i~~~~~ 241 (676)
T 3qa8_A 169 GYAKELDQGEL---CTEFVGTLQYLAPELLEQKKYTVTVDYWSFGTLAFECITGFRPFLPNW----QPVQWHGKVREKSN 241 (676)
T ss_dssp CCCCBTTSCCC---CCCCCSCCTTCSSCSSCCSCCSTTHHHHHHHHHHHHHHSSCSSCCSSC----HHHHSSTTCC----
T ss_pred ccccccccccc---cccccCCcccCChHHhccCCCCchhHHHHHHHHHHHHHHCCCCCCccc----chhhhhhhhhcccc
Confidence 99987654332 234578999999999999999999999999999999999999996531 11222111110000
Q ss_pred h-----hhcccc--chhhh-hhhhhhHHHHHHHHHHHhhccCCCCCCCCCHHH-----HHHHHHHhH
Q 005040 653 T-----EVVDAN--LVREE-QAFSDKMDCLFSIMDLALDCCMDTPHKRIHMTD-----AAAKLRKIK 706 (717)
Q Consensus 653 ~-----~~~~~~--~~~~~-~~~~~~~~~~~~l~~li~~cl~~~P~~Rpt~~e-----v~~~L~~~~ 706 (717)
. +..... +.... ........++..+.+++.+||+.||++|||+.| ..+.++.+.
T Consensus 242 ~~~~~~~~l~g~~~~~~~lp~p~~l~~~ls~~L~dLI~~mL~~DP~kRPTa~elL~hp~F~~l~~iL 308 (676)
T 3qa8_A 242 EHIVVYDDLTGAVKFSSVLPTPNHLSGILAGKLERWLQCMLMWHQRQRGTDPQNPNVGCFQALDSIL 308 (676)
T ss_dssp --CCSCCCCSSSCCCCSSSCCSCCCCGGGHHHHHHHHHHHSCSSCC---CCTTCCCCTTHHHHHHHH
T ss_pred hhhhhhhhhccccccccccCCchhhchhhhHHHHHHHHHHccCCHhhCcCHHHHhcCHHHHHHHHHH
Confidence 0 000000 00000 000112245678999999999999999999988 445555543
No 274
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=100.00 E-value=1.1e-35 Score=318.57 Aligned_cols=294 Identities=20% Similarity=0.206 Sum_probs=232.2
Q ss_pred CCCCCCEEEcccccccCccCCcccccccccccCccCCcEEeccCCCCcccCCcchhccccccceeeecCCcceecCCccc
Q 005040 34 NLRHLSVLSLMMNNLTTESSSADQWSFLSSLTNCRNLANLALASNPLGGILPPLIGNFSASLQNIYAFECKLGGSIPKEI 113 (717)
Q Consensus 34 ~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~l~~~L~~L~l~~n~l~~~~~~~~ 113 (717)
.+.+|++|++++|.++.++... |..+++|++|+|++|.+++..+..|..+ ++|++|++++|++.+..|..|
T Consensus 43 ~l~~l~~l~l~~~~l~~l~~~~--------~~~l~~L~~L~L~~n~i~~~~~~~~~~l-~~L~~L~L~~n~l~~~~~~~~ 113 (390)
T 3o6n_A 43 TLNNQKIVTFKNSTMRKLPAAL--------LDSFRQVELLNLNDLQIEEIDTYAFAYA-HTIQKLYMGFNAIRYLPPHVF 113 (390)
T ss_dssp GGCCCSEEEEESCEESEECTHH--------HHHCCCCSEEECTTSCCCEECTTTTTTC-TTCCEEECCSSCCCCCCTTTT
T ss_pred ccCCceEEEecCCchhhCChhH--------hcccccCcEEECCCCcccccChhhccCC-CCcCEEECCCCCCCcCCHHHh
Confidence 4689999999999999988644 7889999999999999998888888888 689999999999999889999
Q ss_pred cCCCCCcEEEccCCCCcccCCccccccCCCCEEeccCCcccccCCccccCCCCCCEEeccCCcCcccCCccccCCCCCCe
Q 005040 114 GNLRGLIVLSLGFNDLNGTIPTSIGTLQQLQGFYVPENNLQGYVPHDLCHLERLNILNLSGNKLSGAIPQCLASLTSLRS 193 (717)
Q Consensus 114 ~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~ 193 (717)
.++++|++|+|++|.++...+..|.++++|++|++++|.+++..+..|.++++|++|++++|++++.. +..+++|+.
T Consensus 114 ~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~---~~~l~~L~~ 190 (390)
T 3o6n_A 114 QNVPLLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHVD---LSLIPSLFH 190 (390)
T ss_dssp TTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTSSCTTCCEEECCSSCCSBCC---GGGCTTCSE
T ss_pred cCCCCCCEEECCCCccCcCCHHHhcCCCCCcEEECCCCccCccChhhccCCCCCCEEECCCCcCCccc---cccccccce
Confidence 99999999999999999766666899999999999999999998889999999999999999998653 444556666
Q ss_pred EEecCccccCC------------------CChhhhcccCCCeEEccCCcCcccCCccccCCCCCCeEEccCCCCCCCCcc
Q 005040 194 LYLQSNKLSSS------------------LPSSLWSLEYILRINLSSNSLKGTLPSNIQKLNVLIDLDLSRNQLSSDIPS 255 (717)
Q Consensus 194 L~L~~N~l~~~------------------~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~ 255 (717)
|++++|.+++. .|. ...++|+.|++++|.+++. ..+..+++|++|++++|.+++..|.
T Consensus 191 L~l~~n~l~~~~~~~~L~~L~l~~n~l~~~~~--~~~~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~Ls~n~l~~~~~~ 266 (390)
T 3o6n_A 191 ANVSYNLLSTLAIPIAVEELDASHNSINVVRG--PVNVELTILKLQHNNLTDT--AWLLNYPGLVEVDLSYNELEKIMYH 266 (390)
T ss_dssp EECCSSCCSEEECCSSCSEEECCSSCCCEEEC--CCCSSCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCEEESG
T ss_pred eecccccccccCCCCcceEEECCCCeeeeccc--cccccccEEECCCCCCccc--HHHcCCCCccEEECCCCcCCCcChh
Confidence 55555555421 111 1235677777777777643 4677777888888888888776677
Q ss_pred cccCCcccccccccCccccCCCCccccccCccceEeccCCCCCCCCcccccccccccEEEccCCcccccccccccccccc
Q 005040 256 TIGTLKNLETLSLAGNQFQGPIPESVGNLISLESLDFSNNNLSGKIPKSLEALSHLKQFNVSHNRLEGEIPVKGSFKDFS 335 (717)
Q Consensus 256 ~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~~~~~~~~~~l~~L~~L~l~~N~l~~~~p~~~~~~~~~ 335 (717)
.|..+++|++|+|++|++++ ++..+..+++|+.|+|++|++. .+|..+..+++|+.|++++|+++... ...++.+.
T Consensus 267 ~~~~l~~L~~L~L~~n~l~~-~~~~~~~l~~L~~L~L~~n~l~-~~~~~~~~l~~L~~L~L~~N~i~~~~--~~~~~~L~ 342 (390)
T 3o6n_A 267 PFVKMQRLERLYISNNRLVA-LNLYGQPIPTLKVLDLSHNHLL-HVERNQPQFDRLENLYLDHNSIVTLK--LSTHHTLK 342 (390)
T ss_dssp GGTTCSSCCEEECCSSCCCE-EECSSSCCTTCCEEECCSSCCC-CCGGGHHHHTTCSEEECCSSCCCCCC--CCTTCCCS
T ss_pred HccccccCCEEECCCCcCcc-cCcccCCCCCCCEEECCCCcce-ecCccccccCcCCEEECCCCccceeC--chhhccCC
Confidence 77777888888888887774 4555667777888888888777 45666777778888888888877542 34566666
Q ss_pred cccccCCccccC
Q 005040 336 AQSYFGNYALCG 347 (717)
Q Consensus 336 ~~~~~~n~~~c~ 347 (717)
.+.+.+|++.|.
T Consensus 343 ~L~l~~N~~~~~ 354 (390)
T 3o6n_A 343 NLTLSHNDWDCN 354 (390)
T ss_dssp EEECCSSCEEHH
T ss_pred EEEcCCCCccch
Confidence 777777777664
No 275
>3uqc_A Probable conserved transmembrane protein; structural genomics, TB structural genomics consortium, TBSG fold, FHAA, transferase; 2.26A {Mycobacterium tuberculosis} PDB: 3oun_B* 3otv_A 3ouk_A
Probab=100.00 E-value=2e-36 Score=308.89 Aligned_cols=233 Identities=12% Similarity=0.070 Sum_probs=185.2
Q ss_pred ccCCccccccccccEEEEEEEec-CCCeEEEEEechhh---HHHHHHHHHHHHHHHhcCCCceeeEeeeeecCCeeEEEE
Q 005040 427 DEFNECNLLGTGGFGSVYKGTLS-DGTNVAIKIFNLQL---ERAFRSFDSECEILRNVRHRNLLKILGSCSNLDFKALVL 502 (717)
Q Consensus 427 ~~~~~~~~lg~G~~g~V~~~~~~-~~~~vavK~~~~~~---~~~~~~~~~e~~~l~~l~hpniv~~~~~~~~~~~~~lv~ 502 (717)
++|++.+.||+|+||.||+|... +++.||||++.... ....+.+.+|+..+++++||||+++++++.+.+..|+||
T Consensus 31 ~~y~i~~~lg~G~~g~Vy~a~~~~~~~~vavK~~~~~~~~~~~~~~~~~~e~~~l~~l~hp~iv~~~~~~~~~~~~~lv~ 110 (286)
T 3uqc_A 31 GRYRLLIFHGGVPPLQFWQALDTALDRQVALTFVDPQGVLPDDVLQETLSRTLRLSRIDKPGVARVLDVVHTRAGGLVVA 110 (286)
T ss_dssp TTEEEEEEEEBSTTCEEEEEEETTTTEEEEEEESCTTCCSCHHHHHHHHHHHHHHHTCCCTTBCCEEEEEEETTEEEEEE
T ss_pred CcEEEEEEEcccCCeEEEEEEecCCCceEEEEEECcccccCHHHHHHHHHHHHHHhcCCCCCcceeeEEEEECCcEEEEE
Confidence 67999999999999999999976 58999999997553 344577889999999999999999999999999999999
Q ss_pred EccCCCCHHHHHhhCCCCCCHHHHHHHHHHHHHHHHHHhhcCCCCCeEecCCCCCCeeeCCCCcEEEeeeccccccCCCC
Q 005040 503 EFMPNGSLEKWLYSHNYFLDILQRLNIMIDVGSALEYLHHCHSSAPIIHCDLKPTNILLDENMVAHVSDFGISKLLGEGE 582 (717)
Q Consensus 503 e~~~~g~L~~~l~~~~~~~~~~~~~~i~~~i~~~l~~LH~~~~~~~ivH~dlk~~Nill~~~~~~kl~Dfgl~~~~~~~~ 582 (717)
||+++++|.++++.. .....+..++.|++.||+||| +.+|+||||||+||+++.++.+||+++|
T Consensus 111 e~~~g~~L~~~l~~~---~~~~~~~~i~~ql~~aL~~lH----~~givH~Dikp~NIll~~~g~~kl~~~~--------- 174 (286)
T 3uqc_A 111 EWIRGGSLQEVADTS---PSPVGAIRAMQSLAAAADAAH----RAGVALSIDHPSRVRVSIDGDVVLAYPA--------- 174 (286)
T ss_dssp ECCCEEEHHHHHTTC---CCHHHHHHHHHHHHHHHHHHH----HTTCCCCCCSGGGEEEETTSCEEECSCC---------
T ss_pred EecCCCCHHHHHhcC---CChHHHHHHHHHHHHHHHHHH----HCCCccCCCCcccEEEcCCCCEEEEecc---------
Confidence 999999999999653 355678889999999999999 6789999999999999999999998443
Q ss_pred CceeeeccccCccccCCCccCCCCcCcccchhhHHHHHHHHHhCCCCCCccccCcchHHHHHHhhCCCchhhhccccchh
Q 005040 583 DSVIQTMTMATIGYMAPEYGSEGIVSTKCDVYSYGVLLMETFTEKKPTDEMFTGEMSLRRWVKESLPHRLTEVVDANLVR 662 (717)
Q Consensus 583 ~~~~~~~~~~t~~y~aPE~~~~~~~~~~~Dvws~G~il~el~tg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 662 (717)
|++| ++.++|||||||++|||++|+.||.+....... . ............
T Consensus 175 -------------~~~~-------~~~~~Di~slG~il~elltg~~Pf~~~~~~~~~---------~-~~~~~~~~~~~~ 224 (286)
T 3uqc_A 175 -------------TMPD-------ANPQDDIRGIGASLYALLVNRWPLPEAGVRSGL---------A-PAERDTAGQPIE 224 (286)
T ss_dssp -------------CCTT-------CCHHHHHHHHHHHHHHHHHSEECSCCCSBCCCS---------E-ECCBCTTSCBCC
T ss_pred -------------ccCC-------CCchhHHHHHHHHHHHHHHCCCCCCcCCcchhh---------H-HHHHHhccCCCC
Confidence 3333 688999999999999999999999764322100 0 000000000000
Q ss_pred hhhhhhhhHHHHHHHHHHHhhccCCCCCCCCCHHHHHHHHHHhHHhh
Q 005040 663 EEQAFSDKMDCLFSIMDLALDCCMDTPHKRIHMTDAAAKLRKIKAKF 709 (717)
Q Consensus 663 ~~~~~~~~~~~~~~l~~li~~cl~~~P~~Rpt~~ev~~~L~~~~~~~ 709 (717)
......+++.++.+++.+||+.||++| |+.|+++.|+++....
T Consensus 225 ---~~~~~~~~~~~l~~li~~~l~~dP~~R-s~~el~~~L~~~~~~~ 267 (286)
T 3uqc_A 225 ---PADIDRDIPFQISAVAARSVQGDGGIR-SASTLLNLMQQATAVA 267 (286)
T ss_dssp ---HHHHCTTSCHHHHHHHHHHHCTTSSCC-CHHHHHHHHHHHHC--
T ss_pred ---hhhcccCCCHHHHHHHHHHcccCCccC-CHHHHHHHHHHHhccC
Confidence 001112345678999999999999999 9999999999986543
No 276
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=100.00 E-value=4.9e-35 Score=308.50 Aligned_cols=306 Identities=24% Similarity=0.350 Sum_probs=260.4
Q ss_pred cccCCCCCcEEECCCCcceecCCcCCCCCCCCCEEEcccccccCccCCcccccccccccCccCCcEEeccCCCCcccCCc
Q 005040 7 SITNATKLIGLDLGLNSFSGHIPNTFGNLRHLSVLSLMMNNLTTESSSADQWSFLSSLTNCRNLANLALASNPLGGILPP 86 (717)
Q Consensus 7 ~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~ 86 (717)
.+..+++|++|++++|.++. .+ .|..+++|++|+|++|++++++. +..+++|++|+|++|.++.. +
T Consensus 39 ~~~~l~~L~~L~l~~~~i~~-~~-~~~~~~~L~~L~l~~n~i~~~~~----------~~~l~~L~~L~L~~n~i~~~--~ 104 (347)
T 4fmz_A 39 TQEELESITKLVVAGEKVAS-IQ-GIEYLTNLEYLNLNGNQITDISP----------LSNLVKLTNLYIGTNKITDI--S 104 (347)
T ss_dssp CHHHHTTCSEEECCSSCCCC-CT-TGGGCTTCCEEECCSSCCCCCGG----------GTTCTTCCEEECCSSCCCCC--G
T ss_pred cchhcccccEEEEeCCcccc-ch-hhhhcCCccEEEccCCccccchh----------hhcCCcCCEEEccCCcccCc--h
Confidence 34578899999999999985 34 48999999999999999998653 78899999999999999854 4
Q ss_pred chhccccccceeeecCCcceecCCccccCCCCCcEEEccCCCCcccCCccccccCCCCEEeccCCcccccCCccccCCCC
Q 005040 87 LIGNFSASLQNIYAFECKLGGSIPKEIGNLRGLIVLSLGFNDLNGTIPTSIGTLQQLQGFYVPENNLQGYVPHDLCHLER 166 (717)
Q Consensus 87 ~~~~l~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~l~~ 166 (717)
.+..+ ++|++|++++|++.+..+ +..+++|++|++++|..... +..+..+++|++|++++|.+.+..+ +..+++
T Consensus 105 ~~~~l-~~L~~L~l~~n~i~~~~~--~~~l~~L~~L~l~~n~~~~~-~~~~~~l~~L~~L~l~~~~~~~~~~--~~~l~~ 178 (347)
T 4fmz_A 105 ALQNL-TNLRELYLNEDNISDISP--LANLTKMYSLNLGANHNLSD-LSPLSNMTGLNYLTVTESKVKDVTP--IANLTD 178 (347)
T ss_dssp GGTTC-TTCSEEECTTSCCCCCGG--GTTCTTCCEEECTTCTTCCC-CGGGTTCTTCCEEECCSSCCCCCGG--GGGCTT
T ss_pred HHcCC-CcCCEEECcCCcccCchh--hccCCceeEEECCCCCCccc-ccchhhCCCCcEEEecCCCcCCchh--hccCCC
Confidence 57776 679999999999986433 89999999999999966544 3458999999999999999986644 889999
Q ss_pred CCEEeccCCcCcccCCccccCCCCCCeEEecCccccCCCChhhhcccCCCeEEccCCcCcccCCccccCCCCCCeEEccC
Q 005040 167 LNILNLSGNKLSGAIPQCLASLTSLRSLYLQSNKLSSSLPSSLWSLEYILRINLSSNSLKGTLPSNIQKLNVLIDLDLSR 246 (717)
Q Consensus 167 L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~ 246 (717)
|++|++++|.+.+..+ +..+++|+.|++++|.+++..+ +..+++|++|++++|.+++..+ +..+++|+.|++++
T Consensus 179 L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~~~--~~~~~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~ 252 (347)
T 4fmz_A 179 LYSLSLNYNQIEDISP--LASLTSLHYFTAYVNQITDITP--VANMTRLNSLKIGNNKITDLSP--LANLSQLTWLEIGT 252 (347)
T ss_dssp CSEEECTTSCCCCCGG--GGGCTTCCEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCS
T ss_pred CCEEEccCCccccccc--ccCCCccceeecccCCCCCCch--hhcCCcCCEEEccCCccCCCcc--hhcCCCCCEEECCC
Confidence 9999999999986443 8889999999999999986544 8899999999999999986543 89999999999999
Q ss_pred CCCCCCCcccccCCcccccccccCccccCCCCccccccCccceEeccCCCCCCCCcccccccccccEEEccCCccccccc
Q 005040 247 NQLSSDIPSTIGTLKNLETLSLAGNQFQGPIPESVGNLISLESLDFSNNNLSGKIPKSLEALSHLKQFNVSHNRLEGEIP 326 (717)
Q Consensus 247 N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~~~~~~~~~~l~~L~~L~l~~N~l~~~~p 326 (717)
|.+++. ..+..+++|++|++++|++++. ..+..+++|+.|+|++|++.+..+..+..+++|+.|++++|++++..|
T Consensus 253 n~l~~~--~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~ 328 (347)
T 4fmz_A 253 NQISDI--NAVKDLTKLKMLNVGSNQISDI--SVLNNLSQLNSLFLNNNQLGNEDMEVIGGLTNLTTLFLSQNHITDIRP 328 (347)
T ss_dssp SCCCCC--GGGTTCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCGGGHHHHHTCTTCSEEECCSSSCCCCGG
T ss_pred CccCCC--hhHhcCCCcCEEEccCCccCCC--hhhcCCCCCCEEECcCCcCCCcChhHhhccccCCEEEccCCccccccC
Confidence 999864 4688899999999999999864 468899999999999999998888999999999999999999998877
Q ss_pred ccccccccccccccCCc
Q 005040 327 VKGSFKDFSAQSYFGNY 343 (717)
Q Consensus 327 ~~~~~~~~~~~~~~~n~ 343 (717)
...++.+..+.+.+|+
T Consensus 329 -~~~l~~L~~L~l~~N~ 344 (347)
T 4fmz_A 329 -LASLSKMDSADFANQV 344 (347)
T ss_dssp -GGGCTTCSEESSSCC-
T ss_pred -hhhhhccceeehhhhc
Confidence 5567777777777664
No 277
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=100.00 E-value=1.6e-35 Score=332.55 Aligned_cols=326 Identities=23% Similarity=0.273 Sum_probs=208.6
Q ss_pred CccccCCCCCcEEECCCCcceecCCcCCCCCCCCCEEEcccccccCccCCcccccccccccCccCCcEEeccCCCCccc-
Q 005040 5 PNSITNATKLIGLDLGLNSFSGHIPNTFGNLRHLSVLSLMMNNLTTESSSADQWSFLSSLTNCRNLANLALASNPLGGI- 83 (717)
Q Consensus 5 P~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~l~~l~~L~~L~L~~N~l~~~- 83 (717)
|..|.++++|++|+|++|+|++..|+.|.++++|++|+|++|+++.+++.. |.++++|++|+|++|++++.
T Consensus 43 ~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~--------~~~l~~L~~L~Ls~n~l~~~~ 114 (549)
T 2z81_A 43 HGDLRACANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSDNHLSSLSSSW--------FGPLSSLKYLNLMGNPYQTLG 114 (549)
T ss_dssp SSTTSSCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCSCCHHH--------HTTCTTCCEEECTTCCCSSSC
T ss_pred hhhhhcCCcccEEECCCCCcCccChhhccccccCCEEECCCCccCccCHHH--------hccCCCCcEEECCCCcccccc
Confidence 678999999999999999999888899999999999999999998876433 77888888888888888753
Q ss_pred CCcchhccccccceeeecCCc-ceecCCccccCCCCCcEEEccCCCCcccCCccccc-----------------------
Q 005040 84 LPPLIGNFSASLQNIYAFECK-LGGSIPKEIGNLRGLIVLSLGFNDLNGTIPTSIGT----------------------- 139 (717)
Q Consensus 84 ~~~~~~~l~~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~----------------------- 139 (717)
.|..+..+ ++|++|++++|. +....+..|.++++|++|++++|.+++..|..+..
T Consensus 115 ~~~~~~~l-~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~ 193 (549)
T 2z81_A 115 VTSLFPNL-TNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRNYQSQSLKSIRDIHHLTLHLSESAFLLEIFAD 193 (549)
T ss_dssp SSCSCTTC-TTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTTTTTTCSEEEEEEEECSBSTTHHHHHHH
T ss_pred hhhhhhcc-CCccEEECCCCccccccCHhhhhcccccCeeeccCCcccccChhhhhccccCceEecccCcccccchhhHh
Confidence 45566666 568888888877 44444457777777888888777777666655543
Q ss_pred -cCCCCEEeccCCcccccC-------------------------------------------------------------
Q 005040 140 -LQQLQGFYVPENNLQGYV------------------------------------------------------------- 157 (717)
Q Consensus 140 -l~~L~~L~l~~n~i~~~~------------------------------------------------------------- 157 (717)
+++|++|++++|++++..
T Consensus 194 ~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~ 273 (549)
T 2z81_A 194 ILSSVRYLELRDTNLARFQFSPLPVDEVSSPMKKLAFRGSVLTDESFNELLKLLRYILELSEVEFDDCTLNGLGDFNPSE 273 (549)
T ss_dssp STTTBSEEEEESCBCTTCCCCCCSSCCCCCCCCEEEEESCEEEHHHHHHHHGGGGGCTTCCEEEEESCEEECCSCCCCCT
T ss_pred hcccccEEEccCCccccccccccchhhhhhcccceeccccccchhHHHHHHHHhhhhccccccccccccccccccccccc
Confidence 455666666666655421
Q ss_pred ----------------------------------------------------Cccc-cCCCCCCEEeccCCcCcccCC--
Q 005040 158 ----------------------------------------------------PHDL-CHLERLNILNLSGNKLSGAIP-- 182 (717)
Q Consensus 158 ----------------------------------------------------~~~~-~~l~~L~~L~L~~n~l~~~~~-- 182 (717)
|..+ ..+++|++|+|++|++++..|
T Consensus 274 ~~~~~~l~~L~~L~l~~~~i~~~~~~~~l~~~~~~~~~L~~L~l~~n~l~~ip~~~~~~l~~L~~L~Ls~N~l~~~~~~~ 353 (549)
T 2z81_A 274 SDVVSELGKVETVTIRRLHIPQFYLFYDLSTVYSLLEKVKRITVENSKVFLVPCSFSQHLKSLEFLDLSENLMVEEYLKN 353 (549)
T ss_dssp TTCCCCCTTCCEEEEESCBCSCGGGSCCCCHHHHHSTTCCEEEEESSCCCCCCHHHHHHCTTCCEEECCSSCCCHHHHHH
T ss_pred hhhhhhhcccccccccccccchhhhcccchhhhhhcccceEEEeccCccccCCHHHHhcCccccEEEccCCccccccccc
Confidence 1111 123444444444444443321
Q ss_pred -ccccCCCCCCeEEecCccccCCCC--hhhhcccCCCeEEccCCcCcccCCccccCCCCCCeEEccCCCCCCCCcccccC
Q 005040 183 -QCLASLTSLRSLYLQSNKLSSSLP--SSLWSLEYILRINLSSNSLKGTLPSNIQKLNVLIDLDLSRNQLSSDIPSTIGT 259 (717)
Q Consensus 183 -~~~~~l~~L~~L~L~~N~l~~~~~--~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~ 259 (717)
..++.+++|+.|+|++|++++..+ ..+..+++|++|++++|+++ .+|..+..+++|++|++++|.+++ +|..+
T Consensus 354 ~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~~~~L~~L~Ls~N~l~~-l~~~~-- 429 (549)
T 2z81_A 354 SACKGAWPSLQTLVLSQNHLRSMQKTGEILLTLKNLTSLDISRNTFH-PMPDSCQWPEKMRFLNLSSTGIRV-VKTCI-- 429 (549)
T ss_dssp HTCTTSSTTCCEEECTTSCCCCHHHHHHHGGGCTTCCEEECTTCCCC-CCCSCCCCCTTCCEEECTTSCCSC-CCTTS--
T ss_pred hhhhhccccCcEEEccCCcccccccchhhhhcCCCCCEEECCCCCCc-cCChhhcccccccEEECCCCCccc-ccchh--
Confidence 123344444444444444442211 23444444555555555444 334444444445555555554442 22211
Q ss_pred CcccccccccCccccCCCCccccccCccceEeccCCCCCCCCcccccccccccEEEccCCcccccccc-ccccccccccc
Q 005040 260 LKNLETLSLAGNQFQGPIPESVGNLISLESLDFSNNNLSGKIPKSLEALSHLKQFNVSHNRLEGEIPV-KGSFKDFSAQS 338 (717)
Q Consensus 260 l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~~~~~~~~~~l~~L~~L~l~~N~l~~~~p~-~~~~~~~~~~~ 338 (717)
.++|++|++++|++++. +..+++|++|+|++|+++ .+|. ...+++|+.|+|++|++++.+|. ...+..+..+.
T Consensus 430 ~~~L~~L~Ls~N~l~~~----~~~l~~L~~L~Ls~N~l~-~ip~-~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~ 503 (549)
T 2z81_A 430 PQTLEVLDVSNNNLDSF----SLFLPRLQELYISRNKLK-TLPD-ASLFPVLLVMKISRNQLKSVPDGIFDRLTSLQKIW 503 (549)
T ss_dssp CTTCSEEECCSSCCSCC----CCCCTTCCEEECCSSCCS-SCCC-GGGCTTCCEEECCSSCCCCCCTTGGGGCTTCCEEE
T ss_pred cCCceEEECCCCChhhh----cccCChhcEEECCCCccC-cCCC-cccCccCCEEecCCCccCCcCHHHHhcCcccCEEE
Confidence 13444555555544432 246888999999999998 5665 46789999999999999987775 35677788888
Q ss_pred ccCCccccCCC
Q 005040 339 YFGNYALCGPP 349 (717)
Q Consensus 339 ~~~n~~~c~~~ 349 (717)
+.+|++.|+.+
T Consensus 504 l~~N~~~~~~~ 514 (549)
T 2z81_A 504 LHTNPWDCSCP 514 (549)
T ss_dssp CCSSCBCCCHH
T ss_pred ecCCCccCCCc
Confidence 88999888654
No 278
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=100.00 E-value=6.3e-35 Score=305.40 Aligned_cols=299 Identities=20% Similarity=0.296 Sum_probs=238.2
Q ss_pred CCCCccccCC------CCCcEEECCCCcceecCCcCCCCCCCCCEEEcccccccCccCCcccccccccccCccCCcEEec
Q 005040 2 GTIPNSITNA------TKLIGLDLGLNSFSGHIPNTFGNLRHLSVLSLMMNNLTTESSSADQWSFLSSLTNCRNLANLAL 75 (717)
Q Consensus 2 ~~iP~~~~~l------~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~l~~l~~L~~L~L 75 (717)
+++|..+... .+++.++++++.++ .+|..+. ++|++|+|++|.|+.+++.. |.++++|++|+|
T Consensus 17 ~~lp~~~~~~cp~~c~c~l~~l~~~~~~l~-~ip~~~~--~~l~~L~l~~n~i~~~~~~~--------~~~l~~L~~L~L 85 (332)
T 2ft3_A 17 DSLPPTYSAMCPFGCHCHLRVVQCSDLGLK-AVPKEIS--PDTTLLDLQNNDISELRKDD--------FKGLQHLYALVL 85 (332)
T ss_dssp --------CCCCSSCEEETTEEECCSSCCS-SCCSCCC--TTCCEEECCSSCCCEECTTT--------TTTCTTCCEEEC
T ss_pred ccCCCcccCCCCCCCcccCCEEECCCCCcc-ccCCCCC--CCCeEEECCCCcCCccCHhH--------hhCCCCCcEEEC
Confidence 4566655443 36889999999988 5666563 68999999999998876543 788999999999
Q ss_pred cCCCCcccCCcchhccccccceeeecCCcceecCCccccCCCCCcEEEccCCCCcccCCccccccCCCCEEeccCCcccc
Q 005040 76 ASNPLGGILPPLIGNFSASLQNIYAFECKLGGSIPKEIGNLRGLIVLSLGFNDLNGTIPTSIGTLQQLQGFYVPENNLQG 155 (717)
Q Consensus 76 ~~N~l~~~~~~~~~~l~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~i~~ 155 (717)
++|++++..|..|..+ ++|++|++++|++. .+|..+. ++|++|++++|.++...+..|.++++|++|++++|.++.
T Consensus 86 ~~n~l~~~~~~~~~~l-~~L~~L~L~~n~l~-~l~~~~~--~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~ 161 (332)
T 2ft3_A 86 VNNKISKIHEKAFSPL-RKLQKLYISKNHLV-EIPPNLP--SSLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLEN 161 (332)
T ss_dssp CSSCCCEECGGGSTTC-TTCCEEECCSSCCC-SCCSSCC--TTCCEEECCSSCCCCCCSGGGSSCSSCCEEECCSCCCBG
T ss_pred CCCccCccCHhHhhCc-CCCCEEECCCCcCC-ccCcccc--ccCCEEECCCCccCccCHhHhCCCccCCEEECCCCcccc
Confidence 9999998888888887 67999999999988 5555554 789999999999987777778899999999999999863
Q ss_pred --cCCccccCCCCCCEEeccCCcCcccCCccccCCCCCCeEEecCccccCCCChhhhcccCCCeEEccCCcCcccCCccc
Q 005040 156 --YVPHDLCHLERLNILNLSGNKLSGAIPQCLASLTSLRSLYLQSNKLSSSLPSSLWSLEYILRINLSSNSLKGTLPSNI 233 (717)
Q Consensus 156 --~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~ 233 (717)
..+..+..+ +|++|++++|++++ +|..+. ++|++|+|++|++++..+..|..+++|++|++++|.+++..+..+
T Consensus 162 ~~~~~~~~~~l-~L~~L~l~~n~l~~-l~~~~~--~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~ 237 (332)
T 2ft3_A 162 SGFEPGAFDGL-KLNYLRISEAKLTG-IPKDLP--ETLNELHLDHNKIQAIELEDLLRYSKLYRLGLGHNQIRMIENGSL 237 (332)
T ss_dssp GGSCTTSSCSC-CCSCCBCCSSBCSS-CCSSSC--SSCSCCBCCSSCCCCCCTTSSTTCTTCSCCBCCSSCCCCCCTTGG
T ss_pred CCCCcccccCC-ccCEEECcCCCCCc-cCcccc--CCCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCCcCChhHh
Confidence 667778877 89999999999985 454443 689999999999988777888889999999999999988777788
Q ss_pred cCCCCCCeEEccCCCCCCCCcccccCCcccccccccCccccCCCCccccc------cCccceEeccCCCCC--CCCcccc
Q 005040 234 QKLNVLIDLDLSRNQLSSDIPSTIGTLKNLETLSLAGNQFQGPIPESVGN------LISLESLDFSNNNLS--GKIPKSL 305 (717)
Q Consensus 234 ~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~------l~~L~~L~L~~N~~~--~~~~~~~ 305 (717)
..+++|+.|++++|.++ .+|..+..+++|++|++++|++++..+..|.. .+.|+.|++++|++. +..|..|
T Consensus 238 ~~l~~L~~L~L~~N~l~-~lp~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~l~~L~l~~N~~~~~~~~~~~~ 316 (332)
T 2ft3_A 238 SFLPTLRELHLDNNKLS-RVPAGLPDLKLLQVVYLHTNNITKVGVNDFCPVGFGVKRAYYNGISLFNNPVPYWEVQPATF 316 (332)
T ss_dssp GGCTTCCEEECCSSCCC-BCCTTGGGCTTCCEEECCSSCCCBCCTTSSSCSSCCSSSCCBSEEECCSSSSCGGGSCGGGG
T ss_pred hCCCCCCEEECCCCcCe-ecChhhhcCccCCEEECCCCCCCccChhHccccccccccccccceEeecCcccccccCcccc
Confidence 89999999999999998 57777888999999999999998777777754 367888999999887 6777888
Q ss_pred cccccccEEEccCCc
Q 005040 306 EALSHLKQFNVSHNR 320 (717)
Q Consensus 306 ~~l~~L~~L~l~~N~ 320 (717)
..+++|+.+++++|+
T Consensus 317 ~~l~~L~~l~l~~n~ 331 (332)
T 2ft3_A 317 RCVTDRLAIQFGNYK 331 (332)
T ss_dssp TTBCCSTTEEC----
T ss_pred cccchhhhhhccccc
Confidence 889999999998875
No 279
>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}
Probab=100.00 E-value=3e-36 Score=345.37 Aligned_cols=241 Identities=22% Similarity=0.302 Sum_probs=195.1
Q ss_pred hccCCccccccccccEEEEEEEec--CCCeEEEEEechhh-HHHHHHHHHHHHHHHhcCCCceeeEeeeeecCCe-----
Q 005040 426 TDEFNECNLLGTGGFGSVYKGTLS--DGTNVAIKIFNLQL-ERAFRSFDSECEILRNVRHRNLLKILGSCSNLDF----- 497 (717)
Q Consensus 426 ~~~~~~~~~lg~G~~g~V~~~~~~--~~~~vavK~~~~~~-~~~~~~~~~e~~~l~~l~hpniv~~~~~~~~~~~----- 497 (717)
.++|++.+.||+|+||.||+|.+. +++.||||++.... ......+.+|++++++++||||+++++++.+.+.
T Consensus 79 ~~~y~i~~~lg~G~~g~Vy~a~~~~~~~~~vaiK~~~~~~~~~~~~~~~~E~~~l~~l~hp~iv~~~~~~~~~~~~~~~~ 158 (681)
T 2pzi_A 79 AGQYEVKGCIAHGGLGWIYLALDRNVNGRPVVLKGLVHSGDAEAQAMAMAERQFLAEVVHPSIVQIFNFVEHTDRHGDPV 158 (681)
T ss_dssp TTTEEEEEEEEEETTEEEEEEEEGGGTTEEEEEEESCSSCCHHHHHHHHHHHGGGGGCCCTTBCCEEEEEEEECTTSCEE
T ss_pred CCceEEEEEEeeCCCeEEEEEEEcCCCCcEEEEEEeCccCCHHHHHHHHHHHHHHHhcCCCCcCeEeeeEeecCCCCCce
Confidence 368999999999999999999975 68999999886433 3445678899999999999999999999977655
Q ss_pred eEEEEEccCCCCHHHHHhhCCCCCCHHHHHHHHHHHHHHHHHHhhcCCCCCeEecCCCCCCeeeCCCCcEEEeeeccccc
Q 005040 498 KALVLEFMPNGSLEKWLYSHNYFLDILQRLNIMIDVGSALEYLHHCHSSAPIIHCDLKPTNILLDENMVAHVSDFGISKL 577 (717)
Q Consensus 498 ~~lv~e~~~~g~L~~~l~~~~~~~~~~~~~~i~~~i~~~l~~LH~~~~~~~ivH~dlk~~Nill~~~~~~kl~Dfgl~~~ 577 (717)
.|+||||+++++|.+++.. .+++..+..++.||+.||.||| +.+|+||||||+||+++.+ .+||+|||++..
T Consensus 159 ~~lv~E~~~g~~L~~~~~~---~l~~~~~~~~~~qi~~aL~~lH----~~giiHrDlkp~NIll~~~-~~kl~DFG~a~~ 230 (681)
T 2pzi_A 159 GYIVMEYVGGQSLKRSKGQ---KLPVAEAIAYLLEILPALSYLH----SIGLVYNDLKPENIMLTEE-QLKLIDLGAVSR 230 (681)
T ss_dssp EEEEEECCCCEECC----C---CCCHHHHHHHHHHHHHHHHHHH----HTTEECCCCSGGGEEECSS-CEEECCCTTCEE
T ss_pred eEEEEEeCCCCcHHHHHhC---CCCHHHHHHHHHHHHHHHHHHH----HCCCeecccChHHeEEeCC-cEEEEecccchh
Confidence 6999999999999988765 4899999999999999999999 6789999999999999986 899999999987
Q ss_pred cCCCCCceeeeccccCccccCCCccCCCCcCcccchhhHHHHHHHHHhCCCCCCccccCcchHHHHHHhhCCCchhhhcc
Q 005040 578 LGEGEDSVIQTMTMATIGYMAPEYGSEGIVSTKCDVYSYGVLLMETFTEKKPTDEMFTGEMSLRRWVKESLPHRLTEVVD 657 (717)
Q Consensus 578 ~~~~~~~~~~~~~~~t~~y~aPE~~~~~~~~~~~Dvws~G~il~el~tg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 657 (717)
.... ....||++|+|||++.++. +.++|||||||++|||++|..||........ +
T Consensus 231 ~~~~------~~~~gt~~y~aPE~~~~~~-~~~sDi~slG~~l~~l~~g~~~~~~~~~~~~----------~-------- 285 (681)
T 2pzi_A 231 INSF------GYLYGTPGFQAPEIVRTGP-TVATDIYTVGRTLAALTLDLPTRNGRYVDGL----------P-------- 285 (681)
T ss_dssp TTCC------SCCCCCTTTSCTTHHHHCS-CHHHHHHHHHHHHHHHHSCCCEETTEECSSC----------C--------
T ss_pred cccC------CccCCCccccCHHHHcCCC-CCceehhhhHHHHHHHHhCCCCCcccccccc----------c--------
Confidence 6432 3346899999999876654 8899999999999999999998765321110 0
Q ss_pred ccchhhhhhhhhhHHHHHHHHHHHhhccCCCCCCCCC-HHHHHHHHHHhHH
Q 005040 658 ANLVREEQAFSDKMDCLFSIMDLALDCCMDTPHKRIH-MTDAAAKLRKIKA 707 (717)
Q Consensus 658 ~~~~~~~~~~~~~~~~~~~l~~li~~cl~~~P~~Rpt-~~ev~~~L~~~~~ 707 (717)
. .......+..+.+++.+||+.||++||+ ++++.+.|..+.+
T Consensus 286 ----~----~~~~~~~~~~l~~li~~~l~~dP~~R~~~~~~l~~~l~~~~~ 328 (681)
T 2pzi_A 286 ----E----DDPVLKTYDSYGRLLRRAIDPDPRQRFTTAEEMSAQLTGVLR 328 (681)
T ss_dssp ----T----TCHHHHHCHHHHHHHHHHTCSSGGGSCSSHHHHHHHHHHHHH
T ss_pred ----c----cccccccCHHHHHHHhhhccCChhhCCCHHHHHHHHHHHHHH
Confidence 0 0011123456889999999999999995 7777777777644
No 280
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=100.00 E-value=1e-35 Score=308.02 Aligned_cols=255 Identities=35% Similarity=0.560 Sum_probs=213.1
Q ss_pred ccceeeecCCccee--cCCccccCCCCCcEEEccC-CCCcccCCccccccCCCCEEeccCCcccccCCccccCCCCCCEE
Q 005040 94 SLQNIYAFECKLGG--SIPKEIGNLRGLIVLSLGF-NDLNGTIPTSIGTLQQLQGFYVPENNLQGYVPHDLCHLERLNIL 170 (717)
Q Consensus 94 ~L~~L~l~~n~l~~--~~~~~~~~l~~L~~L~L~~-n~l~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L 170 (717)
+++.|+|++|++.+ .+|..|.++++|++|+|++ |.+.+.+|..|.++++|++|+|++|.+++..|..|.++++|++|
T Consensus 51 ~l~~L~L~~~~l~~~~~~~~~l~~l~~L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L 130 (313)
T 1ogq_A 51 RVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTL 130 (313)
T ss_dssp CEEEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCEE
T ss_pred eEEEEECCCCCccCCcccChhHhCCCCCCeeeCCCCCcccccCChhHhcCCCCCEEECcCCeeCCcCCHHHhCCCCCCEE
Confidence 46677777777776 6777788888888888884 77777778888888888888888888887778888888888888
Q ss_pred eccCCcCcccCCccccCCCCCCeEEecCccccCCCChhhhccc-CCCeEEccCCcCcccCCccccCCCCCCeEEccCCCC
Q 005040 171 NLSGNKLSGAIPQCLASLTSLRSLYLQSNKLSSSLPSSLWSLE-YILRINLSSNSLKGTLPSNIQKLNVLIDLDLSRNQL 249 (717)
Q Consensus 171 ~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~-~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~l 249 (717)
+|++|.+++..|..|..+++|++|+|++|++++.+|..+..++ +|++|++++|.+++..|..+..+. |+.|++++|.+
T Consensus 131 ~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~~L~~L~L~~N~l~~~~~~~~~~l~-L~~L~Ls~N~l 209 (313)
T 1ogq_A 131 DFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLN-LAFVDLSRNML 209 (313)
T ss_dssp ECCSSEEESCCCGGGGGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEECCGGGGGCC-CSEEECCSSEE
T ss_pred eCCCCccCCcCChHHhcCCCCCeEECcCCcccCcCCHHHhhhhhcCcEEECcCCeeeccCChHHhCCc-ccEEECcCCcc
Confidence 8888888877788888888888888888888877788888887 888888888888888888888887 88888888888
Q ss_pred CCCCcccccCCcccccccccCccccCCCCccccccCccceEeccCCCCCCCCcccccccccccEEEccCCcccccccccc
Q 005040 250 SSDIPSTIGTLKNLETLSLAGNQFQGPIPESVGNLISLESLDFSNNNLSGKIPKSLEALSHLKQFNVSHNRLEGEIPVKG 329 (717)
Q Consensus 250 ~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~~~~~~~~~~l~~L~~L~l~~N~l~~~~p~~~ 329 (717)
++..|..+..+++|+.|++++|++++..+. +..+++|++|+|++|++++.+|..+..+++|+.|+|++|++++.+|..+
T Consensus 210 ~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~-~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~~ 288 (313)
T 1ogq_A 210 EGDASVLFGSDKNTQKIHLAKNSLAFDLGK-VGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQGG 288 (313)
T ss_dssp EECCGGGCCTTSCCSEEECCSSEECCBGGG-CCCCTTCCEEECCSSCCEECCCGGGGGCTTCCEEECCSSEEEEECCCST
T ss_pred cCcCCHHHhcCCCCCEEECCCCceeeecCc-ccccCCCCEEECcCCcccCcCChHHhcCcCCCEEECcCCcccccCCCCc
Confidence 888888888888888888888888865554 7788899999999999988889999999999999999999999998888
Q ss_pred cccccccccccCCccccCCCC
Q 005040 330 SFKDFSAQSYFGNYALCGPPR 350 (717)
Q Consensus 330 ~~~~~~~~~~~~n~~~c~~~~ 350 (717)
.++.+..+.+.+|+++||.|.
T Consensus 289 ~l~~L~~l~l~~N~~lc~~p~ 309 (313)
T 1ogq_A 289 NLQRFDVSAYANNKCLCGSPL 309 (313)
T ss_dssp TGGGSCGGGTCSSSEEESTTS
T ss_pred cccccChHHhcCCCCccCCCC
Confidence 888888888999999999764
No 281
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=100.00 E-value=1.5e-34 Score=317.08 Aligned_cols=312 Identities=27% Similarity=0.386 Sum_probs=230.1
Q ss_pred CCCCccccCCCCCcEEECCCCcceecCCcCCCCCCCCCEEEcccccccCccCCcccccccccccCccCCcEEeccCCCCc
Q 005040 2 GTIPNSITNATKLIGLDLGLNSFSGHIPNTFGNLRHLSVLSLMMNNLTTESSSADQWSFLSSLTNCRNLANLALASNPLG 81 (717)
Q Consensus 2 ~~iP~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~l~~l~~L~~L~L~~N~l~ 81 (717)
..+|. +..+++|++|+|++|.+++..+ |.++++|++|+|++|.++.+++ +.++++|++|+|++|.++
T Consensus 59 ~~l~~-~~~l~~L~~L~Ls~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~~~----------~~~l~~L~~L~L~~n~l~ 125 (466)
T 1o6v_A 59 KSIDG-VEYLNNLTQINFSNNQLTDITP--LKNLTKLVDILMNNNQIADITP----------LANLTNLTGLTLFNNQIT 125 (466)
T ss_dssp CCCTT-GGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCCCGG----------GTTCTTCCEEECCSSCCC
T ss_pred ccCcc-hhhhcCCCEEECCCCccCCchh--hhccccCCEEECCCCccccChh----------hcCCCCCCEEECCCCCCC
Confidence 45664 7889999999999999986554 8899999999999999887653 678889999999999888
Q ss_pred ccCCcchhccccccceeeecCCcceecCC-------------------ccccCCCCCcEEEccCCCCcccCCccccccCC
Q 005040 82 GILPPLIGNFSASLQNIYAFECKLGGSIP-------------------KEIGNLRGLIVLSLGFNDLNGTIPTSIGTLQQ 142 (717)
Q Consensus 82 ~~~~~~~~~l~~~L~~L~l~~n~l~~~~~-------------------~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~ 142 (717)
+..+ +..+ ++|++|++++|.+.+... ..+.++++|++|++++|.++.. ..+..+++
T Consensus 126 ~~~~--~~~l-~~L~~L~l~~n~l~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~--~~l~~l~~ 200 (466)
T 1o6v_A 126 DIDP--LKNL-TNLNRLELSSNTISDISALSGLTSLQQLSFGNQVTDLKPLANLTTLERLDISSNKVSDI--SVLAKLTN 200 (466)
T ss_dssp CCGG--GTTC-TTCSEEEEEEEEECCCGGGTTCTTCSEEEEEESCCCCGGGTTCTTCCEEECCSSCCCCC--GGGGGCTT
T ss_pred CChH--HcCC-CCCCEEECCCCccCCChhhccCCcccEeecCCcccCchhhccCCCCCEEECcCCcCCCC--hhhccCCC
Confidence 6543 6666 678888888888775311 1255666777777777777643 34677777
Q ss_pred CCEEeccCCcccccCCccccCCCCCCEEeccCCcCcccCCccccCCCCCCeEEecCccccCCCChhhhcccCCCeEEccC
Q 005040 143 LQGFYVPENNLQGYVPHDLCHLERLNILNLSGNKLSGAIPQCLASLTSLRSLYLQSNKLSSSLPSSLWSLEYILRINLSS 222 (717)
Q Consensus 143 L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~ 222 (717)
|++|++++|.+.+..+ +..+++|++|++++|++++. ..+..+++|+.|++++|.+++..+ +..+++|+.|++++
T Consensus 201 L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~ 274 (466)
T 1o6v_A 201 LESLIATNNQISDITP--LGILTNLDELSLNGNQLKDI--GTLASLTNLTDLDLANNQISNLAP--LSGLTKLTELKLGA 274 (466)
T ss_dssp CSEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCCCGG--GTTCTTCSEEECCS
T ss_pred CCEEEecCCccccccc--ccccCCCCEEECCCCCcccc--hhhhcCCCCCEEECCCCccccchh--hhcCCCCCEEECCC
Confidence 7777777777775544 66677777777777777743 346777778888888887775443 77777888888888
Q ss_pred CcCcccCCccccCCCCCCeEEccCCCCCCCCcccccCCcccccccccCccccCCCCccccccCccceEeccCCCCCCCCc
Q 005040 223 NSLKGTLPSNIQKLNVLIDLDLSRNQLSSDIPSTIGTLKNLETLSLAGNQFQGPIPESVGNLISLESLDFSNNNLSGKIP 302 (717)
Q Consensus 223 N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~~~~~ 302 (717)
|.+++..+ +..+++|+.|++++|.+++..+ +..+++|+.|++++|++.+..| +..+++|+.|++++|++++.
T Consensus 275 n~l~~~~~--~~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~-- 346 (466)
T 1o6v_A 275 NQISNISP--LAGLTALTNLELNENQLEDISP--ISNLKNLTYLTLYFNNISDISP--VSSLTKLQRLFFYNNKVSDV-- 346 (466)
T ss_dssp SCCCCCGG--GTTCTTCSEEECCSSCCSCCGG--GGGCTTCSEEECCSSCCSCCGG--GGGCTTCCEEECCSSCCCCC--
T ss_pred CccCcccc--ccCCCccCeEEcCCCcccCchh--hcCCCCCCEEECcCCcCCCchh--hccCccCCEeECCCCccCCc--
Confidence 88775433 7777888888888888876443 6778888888888888876554 67788888888888888754
Q ss_pred ccccccccccEEEccCCcccccccccccccccccccccCCcccc
Q 005040 303 KSLEALSHLKQFNVSHNRLEGEIPVKGSFKDFSAQSYFGNYALC 346 (717)
Q Consensus 303 ~~~~~l~~L~~L~l~~N~l~~~~p~~~~~~~~~~~~~~~n~~~c 346 (717)
..+..+++|+.|++++|++++..| ...++.+..+.+.+|++..
T Consensus 347 ~~l~~l~~L~~L~l~~n~l~~~~~-~~~l~~L~~L~l~~n~~~~ 389 (466)
T 1o6v_A 347 SSLANLTNINWLSAGHNQISDLTP-LANLTRITQLGLNDQAWTN 389 (466)
T ss_dssp GGGTTCTTCCEEECCSSCCCBCGG-GTTCTTCCEEECCCEEEEC
T ss_pred hhhccCCCCCEEeCCCCccCccch-hhcCCCCCEEeccCCcccC
Confidence 467788888888888888887777 4566667767676666544
No 282
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=100.00 E-value=4.5e-35 Score=330.99 Aligned_cols=312 Identities=17% Similarity=0.175 Sum_probs=278.6
Q ss_pred CCCCCcEEECCCCcceecCCcCCCCCCCCCEEEcccccccCccCCcccccccccccCccCCcEEeccCCCCcccCCcchh
Q 005040 10 NATKLIGLDLGLNSFSGHIPNTFGNLRHLSVLSLMMNNLTTESSSADQWSFLSSLTNCRNLANLALASNPLGGILPPLIG 89 (717)
Q Consensus 10 ~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~ 89 (717)
.+.+++.|++++|.++.+.+..|.++++|++|+|++|.|+.+++.. |..+++|++|+|++|.+++..|..|.
T Consensus 49 ~l~~l~~l~l~~~~l~~lp~~~~~~l~~L~~L~L~~n~l~~~~~~~--------~~~l~~L~~L~L~~n~l~~~~~~~~~ 120 (597)
T 3oja_B 49 TLNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYA--------FAYAHTIQKLYMGFNAIRYLPPHVFQ 120 (597)
T ss_dssp GGCCCSEEEESSCEESEECTHHHHHCCCCSEEECTTSCCCEECTTT--------TTTCTTCCEEECCSSCCCCCCTTTTT
T ss_pred cCCCceEEEeeCCCCCCcCHHHHccCCCCcEEECCCCCCCCCChHH--------hcCCCCCCEEECCCCcCCCCCHHHHc
Confidence 4688999999999999888888999999999999999999987544 89999999999999999998888888
Q ss_pred ccccccceeeecCCcceecCCccccCCCCCcEEEccCCCCcccCCccccccCCCCEEeccCCcccccCCccccCCCCCCE
Q 005040 90 NFSASLQNIYAFECKLGGSIPKEIGNLRGLIVLSLGFNDLNGTIPTSIGTLQQLQGFYVPENNLQGYVPHDLCHLERLNI 169 (717)
Q Consensus 90 ~l~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~ 169 (717)
.+ ++|++|+|++|.+.+..+..|.++++|++|+|++|.+++..|..|.++++|++|+|++|.+++.. +..+++|+.
T Consensus 121 ~l-~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~---~~~l~~L~~ 196 (597)
T 3oja_B 121 NV-PLLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHVD---LSLIPSLFH 196 (597)
T ss_dssp TC-TTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECTTSCCSBCC---GGGCTTCSE
T ss_pred CC-CCCCEEEeeCCCCCCCCHHHhccCCCCCEEEeeCCcCCCCChhhhhcCCcCcEEECcCCCCCCcC---hhhhhhhhh
Confidence 88 68999999999999777777899999999999999999999999999999999999999999763 567889999
Q ss_pred EeccCCcCcccCCccccCCCCCCeEEecCccccCCCChhhhcccCCCeEEccCCcCcccCCccccCCCCCCeEEccCCCC
Q 005040 170 LNLSGNKLSGAIPQCLASLTSLRSLYLQSNKLSSSLPSSLWSLEYILRINLSSNSLKGTLPSNIQKLNVLIDLDLSRNQL 249 (717)
Q Consensus 170 L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~l 249 (717)
|++++|.+++. ...++|+.|++++|.++...+. + .++|+.|+|++|.+++ +..+..+++|+.|+|++|.+
T Consensus 197 L~l~~n~l~~l-----~~~~~L~~L~ls~n~l~~~~~~-~--~~~L~~L~L~~n~l~~--~~~l~~l~~L~~L~Ls~N~l 266 (597)
T 3oja_B 197 ANVSYNLLSTL-----AIPIAVEELDASHNSINVVRGP-V--NVELTILKLQHNNLTD--TAWLLNYPGLVEVDLSYNEL 266 (597)
T ss_dssp EECCSSCCSEE-----ECCTTCSEEECCSSCCCEEECS-C--CSCCCEEECCSSCCCC--CGGGGGCTTCSEEECCSSCC
T ss_pred hhcccCccccc-----cCCchhheeeccCCcccccccc-c--CCCCCEEECCCCCCCC--ChhhccCCCCCEEECCCCcc
Confidence 99999999853 4457899999999999854332 2 3689999999999996 47899999999999999999
Q ss_pred CCCCcccccCCcccccccccCccccCCCCccccccCccceEeccCCCCCCCCcccccccccccEEEccCCcccccccccc
Q 005040 250 SSDIPSTIGTLKNLETLSLAGNQFQGPIPESVGNLISLESLDFSNNNLSGKIPKSLEALSHLKQFNVSHNRLEGEIPVKG 329 (717)
Q Consensus 250 ~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~~~~~~~~~~l~~L~~L~l~~N~l~~~~p~~~ 329 (717)
++..|..|+.+++|+.|+|++|.+++ +|..+..+++|+.|+|++|+++ .+|..+..+++|+.|+|++|++++.. ..
T Consensus 267 ~~~~~~~~~~l~~L~~L~Ls~N~l~~-l~~~~~~l~~L~~L~Ls~N~l~-~i~~~~~~l~~L~~L~L~~N~l~~~~--~~ 342 (597)
T 3oja_B 267 EKIMYHPFVKMQRLERLYISNNRLVA-LNLYGQPIPTLKVLDLSHNHLL-HVERNQPQFDRLENLYLDHNSIVTLK--LS 342 (597)
T ss_dssp CEEESGGGTTCSSCCEEECTTSCCCE-EECSSSCCTTCCEEECCSSCCC-CCGGGHHHHTTCSEEECCSSCCCCCC--CC
T ss_pred CCCCHHHhcCccCCCEEECCCCCCCC-CCcccccCCCCcEEECCCCCCC-ccCcccccCCCCCEEECCCCCCCCcC--hh
Confidence 99889999999999999999999995 5777788999999999999999 67888899999999999999998763 34
Q ss_pred cccccccccccCCccccC
Q 005040 330 SFKDFSAQSYFGNYALCG 347 (717)
Q Consensus 330 ~~~~~~~~~~~~n~~~c~ 347 (717)
.++.+..+.+.+|++.|.
T Consensus 343 ~~~~L~~L~l~~N~~~~~ 360 (597)
T 3oja_B 343 THHTLKNLTLSHNDWDCN 360 (597)
T ss_dssp TTCCCSEEECCSSCEEHH
T ss_pred hcCCCCEEEeeCCCCCCh
Confidence 577888888999998875
No 283
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=100.00 E-value=2.3e-34 Score=303.34 Aligned_cols=290 Identities=26% Similarity=0.375 Sum_probs=254.2
Q ss_pred CCCCccccCCCCCcEEECCCCcceecCCcCCCCCCCCCEEEcccccccCccCCcccccccccccCccCCcEEeccCCCCc
Q 005040 2 GTIPNSITNATKLIGLDLGLNSFSGHIPNTFGNLRHLSVLSLMMNNLTTESSSADQWSFLSSLTNCRNLANLALASNPLG 81 (717)
Q Consensus 2 ~~iP~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~l~~l~~L~~L~L~~N~l~ 81 (717)
..+|. +..+++|++|+|++|.+++..+ |.++++|++|+|++|.++.++ .+..+++|++|+|++|.++
T Consensus 57 ~~~~~-~~~~~~L~~L~l~~n~i~~~~~--~~~l~~L~~L~L~~n~i~~~~----------~~~~l~~L~~L~l~~n~i~ 123 (347)
T 4fmz_A 57 ASIQG-IEYLTNLEYLNLNGNQITDISP--LSNLVKLTNLYIGTNKITDIS----------ALQNLTNLRELYLNEDNIS 123 (347)
T ss_dssp CCCTT-GGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCCCG----------GGTTCTTCSEEECTTSCCC
T ss_pred ccchh-hhhcCCccEEEccCCccccchh--hhcCCcCCEEEccCCcccCch----------HHcCCCcCCEEECcCCccc
Confidence 45664 8899999999999999996544 999999999999999999854 2889999999999999998
Q ss_pred ccCCcchhccccccceeeecCCcceecCCccccCCCCCcEEEccCCCCcccCCccccccCCCCEEeccCCcccccCCccc
Q 005040 82 GILPPLIGNFSASLQNIYAFECKLGGSIPKEIGNLRGLIVLSLGFNDLNGTIPTSIGTLQQLQGFYVPENNLQGYVPHDL 161 (717)
Q Consensus 82 ~~~~~~~~~l~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~ 161 (717)
+..+ +..+ ++|++|++++|.....+ ..+..+++|++|++++|.+....+ +..+++|++|++++|.+.+..+ +
T Consensus 124 ~~~~--~~~l-~~L~~L~l~~n~~~~~~-~~~~~l~~L~~L~l~~~~~~~~~~--~~~l~~L~~L~l~~n~l~~~~~--~ 195 (347)
T 4fmz_A 124 DISP--LANL-TKMYSLNLGANHNLSDL-SPLSNMTGLNYLTVTESKVKDVTP--IANLTDLYSLSLNYNQIEDISP--L 195 (347)
T ss_dssp CCGG--GTTC-TTCCEEECTTCTTCCCC-GGGTTCTTCCEEECCSSCCCCCGG--GGGCTTCSEEECTTSCCCCCGG--G
T ss_pred Cchh--hccC-CceeEEECCCCCCcccc-cchhhCCCCcEEEecCCCcCCchh--hccCCCCCEEEccCCccccccc--c
Confidence 6543 6666 67999999999766444 449999999999999999986544 8999999999999999996644 8
Q ss_pred cCCCCCCEEeccCCcCcccCCccccCCCCCCeEEecCccccCCCChhhhcccCCCeEEccCCcCcccCCccccCCCCCCe
Q 005040 162 CHLERLNILNLSGNKLSGAIPQCLASLTSLRSLYLQSNKLSSSLPSSLWSLEYILRINLSSNSLKGTLPSNIQKLNVLID 241 (717)
Q Consensus 162 ~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~ 241 (717)
..+++|+.|++++|.+++..+ +..+++|++|++++|++++..+ +..+++|++|++++|.+++. ..+..+++|+.
T Consensus 196 ~~l~~L~~L~l~~n~l~~~~~--~~~~~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~ 269 (347)
T 4fmz_A 196 ASLTSLHYFTAYVNQITDITP--VANMTRLNSLKIGNNKITDLSP--LANLSQLTWLEIGTNQISDI--NAVKDLTKLKM 269 (347)
T ss_dssp GGCTTCCEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCCC--GGGTTCTTCCE
T ss_pred cCCCccceeecccCCCCCCch--hhcCCcCCEEEccCCccCCCcc--hhcCCCCCEEECCCCccCCC--hhHhcCCCcCE
Confidence 899999999999999996544 8899999999999999996544 88999999999999999964 57999999999
Q ss_pred EEccCCCCCCCCcccccCCcccccccccCccccCCCCccccccCccceEeccCCCCCCCCcccccccccccEEEccCCcc
Q 005040 242 LDLSRNQLSSDIPSTIGTLKNLETLSLAGNQFQGPIPESVGNLISLESLDFSNNNLSGKIPKSLEALSHLKQFNVSHNRL 321 (717)
Q Consensus 242 L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~~~~~~~~~~l~~L~~L~l~~N~l 321 (717)
|++++|.+++. ..+..+++|++|++++|++.+..+..+..+++|+.|+|++|++++..| +..+++|+.|++++|++
T Consensus 270 L~l~~n~l~~~--~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~l~~N~i 345 (347)
T 4fmz_A 270 LNVGSNQISDI--SVLNNLSQLNSLFLNNNQLGNEDMEVIGGLTNLTTLFLSQNHITDIRP--LASLSKMDSADFANQVI 345 (347)
T ss_dssp EECCSSCCCCC--GGGGGCTTCSEEECCSSCCCGGGHHHHHTCTTCSEEECCSSSCCCCGG--GGGCTTCSEESSSCC--
T ss_pred EEccCCccCCC--hhhcCCCCCCEEECcCCcCCCcChhHhhccccCCEEEccCCccccccC--hhhhhccceeehhhhcc
Confidence 99999999974 458899999999999999998888999999999999999999997766 88999999999999998
Q ss_pred c
Q 005040 322 E 322 (717)
Q Consensus 322 ~ 322 (717)
+
T Consensus 346 ~ 346 (347)
T 4fmz_A 346 K 346 (347)
T ss_dssp -
T ss_pred c
Confidence 6
No 284
>3m2w_A MAP kinase-activated protein kinase 2; small molecule inhibitor, spiroazetidine-tetracycle, ATP-SIT inhibitor, novartis compound NVP-BXS169; HET: L8I; 2.41A {Homo sapiens} PDB: 3kga_A* 3m42_A*
Probab=100.00 E-value=2.2e-35 Score=304.16 Aligned_cols=230 Identities=21% Similarity=0.299 Sum_probs=179.2
Q ss_pred hccCCcc-ccccccccEEEEEEEec-CCCeEEEEEechhhHHHHHHHHHHHHHH-HhcCCCceeeEeeeeec----CCee
Q 005040 426 TDEFNEC-NLLGTGGFGSVYKGTLS-DGTNVAIKIFNLQLERAFRSFDSECEIL-RNVRHRNLLKILGSCSN----LDFK 498 (717)
Q Consensus 426 ~~~~~~~-~~lg~G~~g~V~~~~~~-~~~~vavK~~~~~~~~~~~~~~~e~~~l-~~l~hpniv~~~~~~~~----~~~~ 498 (717)
.++|.+. +.||+|+||.||+|... +++.||+|++... ..+.+|++++ +..+||||+++++++.+ ....
T Consensus 16 ~~~y~~~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~-----~~~~~e~~~~~~~~~h~~i~~~~~~~~~~~~~~~~~ 90 (299)
T 3m2w_A 16 IDDYKVTSQVLGLGINGKVLQIFNKRTQEKFALKMLQDC-----PKARREVELHWRASQCPHIVRIVDVYENLYAGRKCL 90 (299)
T ss_dssp GGTEEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEECS-----HHHHHHHHHHHHHTTSTTBCCEEEEEEEEETTEEEE
T ss_pred ccchhhcCcccccCCCeEEEEEEEcCCCcEEEEEEeccc-----HHHHHHHHHHHHhccCCCchhHHhhhhhhcCCCceE
Confidence 3567776 77999999999999974 7899999998643 3456788888 55589999999999876 6778
Q ss_pred EEEEEccCCCCHHHHHhhCC-CCCCHHHHHHHHHHHHHHHHHHhhcCCCCCeEecCCCCCCeeeCC---CCcEEEeeecc
Q 005040 499 ALVLEFMPNGSLEKWLYSHN-YFLDILQRLNIMIDVGSALEYLHHCHSSAPIIHCDLKPTNILLDE---NMVAHVSDFGI 574 (717)
Q Consensus 499 ~lv~e~~~~g~L~~~l~~~~-~~~~~~~~~~i~~~i~~~l~~LH~~~~~~~ivH~dlk~~Nill~~---~~~~kl~Dfgl 574 (717)
++||||+++|+|.+++.... ..+++..+..++.|++.||.||| +.+|+||||||+||+++. ++.+||+|||+
T Consensus 91 ~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~i~~qi~~~l~~lH----~~~i~H~dlkp~Nil~~~~~~~~~~kl~Dfg~ 166 (299)
T 3m2w_A 91 LIVMECLDGGELFSRIQDRGDQAFTEREASEIMKSIGEAIQYLH----SINIAHRDVKPENLLYTSKRPNAILKLTDFGF 166 (299)
T ss_dssp EEEECCCCSCBHHHHHHHCTTCCCBHHHHHHHHHHHHHHHHHHH----HTTEECCCCSGGGEEESSSSTTCCEEECCCTT
T ss_pred EEEEeecCCCcHHHHHHhccCCCCCHHHHHHHHHHHHHHHHHHH----hCCcccCCCCHHHEEEecCCCCCcEEEecccc
Confidence 99999999999999998753 45899999999999999999999 678999999999999998 78999999999
Q ss_pred ccccCCCCCceeeeccccCccccCCCccCCCCcCcccchhhHHHHHHHHHhCCCCCCccccCcchHHHHHHhhCCCchhh
Q 005040 575 SKLLGEGEDSVIQTMTMATIGYMAPEYGSEGIVSTKCDVYSYGVLLMETFTEKKPTDEMFTGEMSLRRWVKESLPHRLTE 654 (717)
Q Consensus 575 ~~~~~~~~~~~~~~~~~~t~~y~aPE~~~~~~~~~~~Dvws~G~il~el~tg~~p~~~~~~~~~~~~~~~~~~~~~~~~~ 654 (717)
+.... +..++.++||||+|+++|||++|+.||....... .........
T Consensus 167 a~~~~------------------------~~~~~~~~DiwslG~il~el~tg~~pf~~~~~~~------~~~~~~~~~-- 214 (299)
T 3m2w_A 167 AKETT------------------------GEKYDKSCDMWSLGVIMYILLCGYPPFYSNHGLA------ISPGMKTRI-- 214 (299)
T ss_dssp CEECT------------------------TCGGGGHHHHHHHHHHHHHHHHSSCSCCC-------------CCSCCSS--
T ss_pred ccccc------------------------cccCCchhhHHHHHHHHHHHHHCCCCCCCCcchh------hhHHHHHHH--
Confidence 86532 2346789999999999999999999996532111 000000000
Q ss_pred hccccchhhhhhhhhhHHHHHHHHHHHhhccCCCCCCCCCHHHHHH
Q 005040 655 VVDANLVREEQAFSDKMDCLFSIMDLALDCCMDTPHKRIHMTDAAA 700 (717)
Q Consensus 655 ~~~~~~~~~~~~~~~~~~~~~~l~~li~~cl~~~P~~Rpt~~ev~~ 700 (717)
....... .......++.++.+++.+||+.||++|||+.|+++
T Consensus 215 -~~~~~~~---~~~~~~~~~~~~~~li~~~l~~dP~~Rps~~e~l~ 256 (299)
T 3m2w_A 215 -RMGQYEF---PNPEWSEVSEEVKMLIRNLLKTEPTQRMTITEFMN 256 (299)
T ss_dssp -CTTCCSS---CHHHHTTSCHHHHHHHHHHTCSSTTTSCCHHHHHT
T ss_pred -hhccccC---CchhcccCCHHHHHHHHHHcccChhhCCCHHHHhc
Confidence 0000000 00111245677899999999999999999999987
No 285
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=100.00 E-value=4.6e-34 Score=298.63 Aligned_cols=291 Identities=19% Similarity=0.275 Sum_probs=243.4
Q ss_pred CCCCcEEECCCCcceecCCcCCCCCCCCCEEEcccccccCccCCcccccccccccCccCCcEEeccCCCCcccCCcchhc
Q 005040 11 ATKLIGLDLGLNSFSGHIPNTFGNLRHLSVLSLMMNNLTTESSSADQWSFLSSLTNCRNLANLALASNPLGGILPPLIGN 90 (717)
Q Consensus 11 l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~ 90 (717)
..+++.++++++.++ .+|..+. ++|++|+|++|+|+.++... |.++++|++|+|++|.+++..|..+..
T Consensus 30 ~c~l~~l~~~~~~l~-~lp~~~~--~~l~~L~L~~n~i~~~~~~~--------~~~l~~L~~L~L~~n~l~~~~~~~~~~ 98 (330)
T 1xku_A 30 QCHLRVVQCSDLGLE-KVPKDLP--PDTALLDLQNNKITEIKDGD--------FKNLKNLHTLILINNKISKISPGAFAP 98 (330)
T ss_dssp EEETTEEECTTSCCC-SCCCSCC--TTCCEEECCSSCCCCBCTTT--------TTTCTTCCEEECCSSCCCCBCTTTTTT
T ss_pred cCCCeEEEecCCCcc-ccCccCC--CCCeEEECCCCcCCEeChhh--------hccCCCCCEEECCCCcCCeeCHHHhcC
Confidence 347889999999998 4666554 68999999999999887544 888999999999999999888888888
Q ss_pred cccccceeeecCCcceecCCccccCCCCCcEEEccCCCCcccCCccccccCCCCEEeccCCcccc--cCCccccCCCCCC
Q 005040 91 FSASLQNIYAFECKLGGSIPKEIGNLRGLIVLSLGFNDLNGTIPTSIGTLQQLQGFYVPENNLQG--YVPHDLCHLERLN 168 (717)
Q Consensus 91 l~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~i~~--~~~~~~~~l~~L~ 168 (717)
+ ++|++|++++|++. .+|..+. ++|++|++++|.++...+..|.++++|+.|++++|.+.. ..+..+.++++|+
T Consensus 99 l-~~L~~L~Ls~n~l~-~l~~~~~--~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~ 174 (330)
T 1xku_A 99 L-VKLERLYLSKNQLK-ELPEKMP--KTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLS 174 (330)
T ss_dssp C-TTCCEEECCSSCCS-BCCSSCC--TTCCEEECCSSCCCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCC
T ss_pred C-CCCCEEECCCCcCC-ccChhhc--ccccEEECCCCcccccCHhHhcCCccccEEECCCCcCCccCcChhhccCCCCcC
Confidence 7 67999999999988 4565554 789999999999998777788999999999999999864 6777889999999
Q ss_pred EEeccCCcCcccCCccccCCCCCCeEEecCccccCCCChhhhcccCCCeEEccCCcCcccCCccccCCCCCCeEEccCCC
Q 005040 169 ILNLSGNKLSGAIPQCLASLTSLRSLYLQSNKLSSSLPSSLWSLEYILRINLSSNSLKGTLPSNIQKLNVLIDLDLSRNQ 248 (717)
Q Consensus 169 ~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~ 248 (717)
+|++++|.++. +|..+. ++|++|++++|++++..+..|..+++|++|++++|.+++..+..+..+++|+.|+|++|.
T Consensus 175 ~L~l~~n~l~~-l~~~~~--~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~ 251 (330)
T 1xku_A 175 YIRIADTNITT-IPQGLP--PSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNK 251 (330)
T ss_dssp EEECCSSCCCS-CCSSCC--TTCSEEECTTSCCCEECTGGGTTCTTCCEEECCSSCCCEECTTTGGGSTTCCEEECCSSC
T ss_pred EEECCCCcccc-CCcccc--ccCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCceeChhhccCCCCCCEEECCCCc
Confidence 99999999985 454433 789999999999998888889999999999999999998877889999999999999999
Q ss_pred CCCCCcccccCCcccccccccCccccCCCCccccc------cCccceEeccCCCCCC--CCcccccccccccEEEccCCc
Q 005040 249 LSSDIPSTIGTLKNLETLSLAGNQFQGPIPESVGN------LISLESLDFSNNNLSG--KIPKSLEALSHLKQFNVSHNR 320 (717)
Q Consensus 249 l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~------l~~L~~L~L~~N~~~~--~~~~~~~~l~~L~~L~l~~N~ 320 (717)
++ .+|..+..+++|++|++++|++++..+..|.. .+.|+.|++++|++.. ..|..|..+++++.++|++|+
T Consensus 252 l~-~lp~~l~~l~~L~~L~l~~N~i~~~~~~~f~~~~~~~~~~~l~~l~l~~N~~~~~~i~~~~f~~~~~l~~l~L~~N~ 330 (330)
T 1xku_A 252 LV-KVPGGLADHKYIQVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQYWEIQPSTFRCVYVRAAVQLGNYK 330 (330)
T ss_dssp CS-SCCTTTTTCSSCCEEECCSSCCCCCCTTSSSCSSCCTTSCCCSEEECCSSSSCGGGSCGGGGTTCCCGGGEEC----
T ss_pred Cc-cCChhhccCCCcCEEECCCCcCCccChhhcCCcccccccccccceEeecCcccccccCccccccccceeEEEecccC
Confidence 98 57778888999999999999999777777754 3678899999998864 667888899999999999885
No 286
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=100.00 E-value=5.1e-35 Score=302.83 Aligned_cols=253 Identities=28% Similarity=0.455 Sum_probs=234.5
Q ss_pred cCCcEEeccCCCCcc--cCCcchhccccccceeeecC-CcceecCCccccCCCCCcEEEccCCCCcccCCccccccCCCC
Q 005040 68 RNLANLALASNPLGG--ILPPLIGNFSASLQNIYAFE-CKLGGSIPKEIGNLRGLIVLSLGFNDLNGTIPTSIGTLQQLQ 144 (717)
Q Consensus 68 ~~L~~L~L~~N~l~~--~~~~~~~~l~~~L~~L~l~~-n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~ 144 (717)
.+++.|+|++|.+++ .+|..+..+ ++|++|++++ |++.+.+|..|.++++|++|+|++|.+++..|..|.++++|+
T Consensus 50 ~~l~~L~L~~~~l~~~~~~~~~l~~l-~~L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~ 128 (313)
T 1ogq_A 50 YRVNNLDLSGLNLPKPYPIPSSLANL-PYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLV 128 (313)
T ss_dssp CCEEEEEEECCCCSSCEECCGGGGGC-TTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCC
T ss_pred ceEEEEECCCCCccCCcccChhHhCC-CCCCeeeCCCCCcccccCChhHhcCCCCCEEECcCCeeCCcCCHHHhCCCCCC
Confidence 578999999999988 788888888 6799999995 899989999999999999999999999988999999999999
Q ss_pred EEeccCCcccccCCccccCCCCCCEEeccCCcCcccCCccccCCC-CCCeEEecCccccCCCChhhhcccCCCeEEccCC
Q 005040 145 GFYVPENNLQGYVPHDLCHLERLNILNLSGNKLSGAIPQCLASLT-SLRSLYLQSNKLSSSLPSSLWSLEYILRINLSSN 223 (717)
Q Consensus 145 ~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~-~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N 223 (717)
+|+|++|.+++..|..+..+++|++|+|++|++++.+|..+..++ +|++|+|++|++++..|..+..++ |+.|++++|
T Consensus 129 ~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~~L~~L~L~~N~l~~~~~~~~~~l~-L~~L~Ls~N 207 (313)
T 1ogq_A 129 TLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLN-LAFVDLSRN 207 (313)
T ss_dssp EEECCSSEEESCCCGGGGGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEECCGGGGGCC-CSEEECCSS
T ss_pred EEeCCCCccCCcCChHHhcCCCCCeEECcCCcccCcCCHHHhhhhhcCcEEECcCCeeeccCChHHhCCc-ccEEECcCC
Confidence 999999999999999999999999999999999988999999998 999999999999988999999987 999999999
Q ss_pred cCcccCCccccCCCCCCeEEccCCCCCCCCcccccCCcccccccccCccccCCCCccccccCccceEeccCCCCCCCCcc
Q 005040 224 SLKGTLPSNIQKLNVLIDLDLSRNQLSSDIPSTIGTLKNLETLSLAGNQFQGPIPESVGNLISLESLDFSNNNLSGKIPK 303 (717)
Q Consensus 224 ~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~~~~~~ 303 (717)
.+++..|..|..+++|+.|+|++|.+++..|. +..+++|++|+|++|++++.+|..+..+++|+.|+|++|++++.+|.
T Consensus 208 ~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~-~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~ 286 (313)
T 1ogq_A 208 MLEGDASVLFGSDKNTQKIHLAKNSLAFDLGK-VGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQ 286 (313)
T ss_dssp EEEECCGGGCCTTSCCSEEECCSSEECCBGGG-CCCCTTCCEEECCSSCCEECCCGGGGGCTTCCEEECCSSEEEEECCC
T ss_pred cccCcCCHHHhcCCCCCEEECCCCceeeecCc-ccccCCCCEEECcCCcccCcCChHHhcCcCCCEEECcCCcccccCCC
Confidence 99999999999999999999999999976655 88899999999999999999999999999999999999999998888
Q ss_pred cccccccccEEEccCCc-cccc
Q 005040 304 SLEALSHLKQFNVSHNR-LEGE 324 (717)
Q Consensus 304 ~~~~l~~L~~L~l~~N~-l~~~ 324 (717)
. ..+++|+.+++++|+ ++|.
T Consensus 287 ~-~~l~~L~~l~l~~N~~lc~~ 307 (313)
T 1ogq_A 287 G-GNLQRFDVSAYANNKCLCGS 307 (313)
T ss_dssp S-TTGGGSCGGGTCSSSEEEST
T ss_pred C-ccccccChHHhcCCCCccCC
Confidence 6 889999999999999 5553
No 287
>3dzo_A Rhoptry kinase domain; parasitic disease, transferase, structural genomics, structural genomics consortium, SGC; 1.80A {Toxoplasma gondii}
Probab=100.00 E-value=9.3e-36 Score=320.55 Aligned_cols=239 Identities=15% Similarity=0.164 Sum_probs=179.2
Q ss_pred ccCCccccccccccEEEEEEEec-CCCeEEEEEechhh---HHHHHHHHHHHHHHHhcCC-Cceee--------------
Q 005040 427 DEFNECNLLGTGGFGSVYKGTLS-DGTNVAIKIFNLQL---ERAFRSFDSECEILRNVRH-RNLLK-------------- 487 (717)
Q Consensus 427 ~~~~~~~~lg~G~~g~V~~~~~~-~~~~vavK~~~~~~---~~~~~~~~~e~~~l~~l~h-pniv~-------------- 487 (717)
..|...+.||+|+||.||+|.+. +|+.||||++.... ....+.+.+|+.+++.++| ++...
T Consensus 78 ~~~~~~~~LG~G~fG~Vy~a~~~~~g~~vAvK~~~~~~~~~~~~~~~~~~E~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 157 (413)
T 3dzo_A 78 RTLVRGTVLGQEDPYAYLEATDQETGESFEVHVPYFTERPPSNAIKQMKEEVLRLRLLRGIKNQKQAKVHLRFIFPFDLV 157 (413)
T ss_dssp EEEEEEEEEEEETTEEEEEEEETTTCCEEEEEEECCSCC----CCHHHHHHHHGGGGSTTCCSHHHHHHHTCBCCCCEEE
T ss_pred eeEEEecccccCCCEEEEEEEecCCCCceEEEEEecCCCccHHHHHHHHHHHHHHHhhccCCCHHHHHHhcccccchhhc
Confidence 45778889999999999999964 79999999987332 2234678899999999976 22111
Q ss_pred -------Eeeeeec-----CCeeEEEEEccCCCCHHHHHh------hCCCCCCHHHHHHHHHHHHHHHHHHhhcCCCCCe
Q 005040 488 -------ILGSCSN-----LDFKALVLEFMPNGSLEKWLY------SHNYFLDILQRLNIMIDVGSALEYLHHCHSSAPI 549 (717)
Q Consensus 488 -------~~~~~~~-----~~~~~lv~e~~~~g~L~~~l~------~~~~~~~~~~~~~i~~~i~~~l~~LH~~~~~~~i 549 (717)
+..++.. ....+++|+++ +++|.++++ .....+++..+..++.|+++||+||| +.+|
T Consensus 158 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~L~~ll~~l~~~~~~~~~l~~~~~~~i~~qi~~aL~~LH----~~~i 232 (413)
T 3dzo_A 158 KDPQKKKMIRVRLDERDMWVLSRFFLYPRM-QSNLQTFGEVLLSHSSTHKSLVHHARLQLTLQVIRLLASLH----HYGL 232 (413)
T ss_dssp ECCC---------------CCSEEEEEECC-SEEHHHHHHHHHHHTTTSHHHHHHHHHHHHHHHHHHHHHHH----HTTE
T ss_pred ccCCCCccccccCCCccccccceEEEeehh-cCCHHHHHHHhhcccccCCCCCHHHHHHHHHHHHHHHHHHH----hCCc
Confidence 1111111 22456777766 679999985 22445788899999999999999999 6789
Q ss_pred EecCCCCCCeeeCCCCcEEEeeeccccccCCCCCceeeeccccCccccCCCcc----------CCCCcCcccchhhHHHH
Q 005040 550 IHCDLKPTNILLDENMVAHVSDFGISKLLGEGEDSVIQTMTMATIGYMAPEYG----------SEGIVSTKCDVYSYGVL 619 (717)
Q Consensus 550 vH~dlk~~Nill~~~~~~kl~Dfgl~~~~~~~~~~~~~~~~~~t~~y~aPE~~----------~~~~~~~~~Dvws~G~i 619 (717)
+||||||+|||++.++.+||+|||+++..+.. .....| +.|+|||++ .+..++.++|||||||+
T Consensus 233 iHrDiKp~NILl~~~~~~kL~DFG~a~~~~~~-----~~~~~g-~~y~aPE~~~~~~~~~~~~~~~~~~~~~DvwSlGvi 306 (413)
T 3dzo_A 233 VHTYLRPVDIVLDQRGGVFLTGFEHLVRDGAS-----AVSPIG-RGFAPPETTAERMLPFGQHHPTLMTFAFDTWTLGLA 306 (413)
T ss_dssp ECSCCCGGGEEECTTCCEEECCGGGCEETTEE-----ECCCCC-TTTCCHHHHHHHTSTTGGGCCEEECHHHHHHHHHHH
T ss_pred ccCCcccceEEEecCCeEEEEeccceeecCCc-----cccCCC-CceeCchhhhccccccccccCcCCCchhhHHHHHHH
Confidence 99999999999999999999999998865322 334467 999999988 66678999999999999
Q ss_pred HHHHHhCCCCCCccccCcchHHHHHHhhCCCchhhhccccchhhhhhhhhhHHHHHHHHHHHhhccCCCCCCCCCHHHHH
Q 005040 620 LMETFTEKKPTDEMFTGEMSLRRWVKESLPHRLTEVVDANLVREEQAFSDKMDCLFSIMDLALDCCMDTPHKRIHMTDAA 699 (717)
Q Consensus 620 l~el~tg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~cl~~~P~~Rpt~~ev~ 699 (717)
+|||++|+.||......+. ...++. ....++.++.+++.+||+.||++||++.|++
T Consensus 307 l~elltg~~Pf~~~~~~~~-------------~~~~~~-----------~~~~~~~~~~~li~~~l~~dP~~Rpt~~~~l 362 (413)
T 3dzo_A 307 IYWIWCADLPNTDDAALGG-------------SEWIFR-----------SCKNIPQPVRALLEGFLRYPKEDRLLPLQAM 362 (413)
T ss_dssp HHHHHHSSCCCCTTGGGSC-------------SGGGGS-----------SCCCCCHHHHHHHHHHTCSSGGGSCCHHHHT
T ss_pred HHHHHHCCCCCCCcchhhh-------------HHHHHh-----------hcccCCHHHHHHHHHHccCChhhCcCHHHHH
Confidence 9999999999976322110 001111 0012346688999999999999999977765
Q ss_pred H
Q 005040 700 A 700 (717)
Q Consensus 700 ~ 700 (717)
+
T Consensus 363 ~ 363 (413)
T 3dzo_A 363 E 363 (413)
T ss_dssp T
T ss_pred h
Confidence 4
No 288
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=100.00 E-value=1.4e-33 Score=294.84 Aligned_cols=278 Identities=23% Similarity=0.288 Sum_probs=244.5
Q ss_pred CCCCCccccCCCCCcEEECCCCcceecCCcCCCCCCCCCEEEcccccccCccCCcccccccccccCccCCcEEeccCCCC
Q 005040 1 MGTIPNSITNATKLIGLDLGLNSFSGHIPNTFGNLRHLSVLSLMMNNLTTESSSADQWSFLSSLTNCRNLANLALASNPL 80 (717)
Q Consensus 1 ~~~iP~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~l~~l~~L~~L~L~~N~l 80 (717)
+..+|..+. +++++|+|++|+|+++.+..|.++++|++|+|++|+++.+.+.. |..+++|++|+|++|++
T Consensus 43 l~~lp~~~~--~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~--------~~~l~~L~~L~Ls~n~l 112 (330)
T 1xku_A 43 LEKVPKDLP--PDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGA--------FAPLVKLERLYLSKNQL 112 (330)
T ss_dssp CCSCCCSCC--TTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTT--------TTTCTTCCEEECCSSCC
T ss_pred ccccCccCC--CCCeEEECCCCcCCEeChhhhccCCCCCEEECCCCcCCeeCHHH--------hcCCCCCCEEECCCCcC
Confidence 357887775 68999999999999888889999999999999999999886544 88999999999999999
Q ss_pred cccCCcchhccccccceeeecCCcceecCCccccCCCCCcEEEccCCCCcc--cCCccccccCCCCEEeccCCcccccCC
Q 005040 81 GGILPPLIGNFSASLQNIYAFECKLGGSIPKEIGNLRGLIVLSLGFNDLNG--TIPTSIGTLQQLQGFYVPENNLQGYVP 158 (717)
Q Consensus 81 ~~~~~~~~~~l~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~--~~~~~~~~l~~L~~L~l~~n~i~~~~~ 158 (717)
+. +|..+. ++|++|++++|++.+..+..|.++++|++|++++|.++. ..+..|.++++|++|++++|.++.. |
T Consensus 113 ~~-l~~~~~---~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~l-~ 187 (330)
T 1xku_A 113 KE-LPEKMP---KTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNITTI-P 187 (330)
T ss_dssp SB-CCSSCC---TTCCEEECCSSCCCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSSCCCSC-C
T ss_pred Cc-cChhhc---ccccEEECCCCcccccCHhHhcCCccccEEECCCCcCCccCcChhhccCCCCcCEEECCCCccccC-C
Confidence 84 555443 579999999999998888889999999999999999964 6778899999999999999999964 4
Q ss_pred ccccCCCCCCEEeccCCcCcccCCccccCCCCCCeEEecCccccCCCChhhhcccCCCeEEccCCcCcccCCccccCCCC
Q 005040 159 HDLCHLERLNILNLSGNKLSGAIPQCLASLTSLRSLYLQSNKLSSSLPSSLWSLEYILRINLSSNSLKGTLPSNIQKLNV 238 (717)
Q Consensus 159 ~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~ 238 (717)
..+. ++|++|+|++|++++..+..|..+++|+.|+|++|.+++..+..+..+++|++|+|++|.++ .+|..+..+++
T Consensus 188 ~~~~--~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~-~lp~~l~~l~~ 264 (330)
T 1xku_A 188 QGLP--PSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLV-KVPGGLADHKY 264 (330)
T ss_dssp SSCC--TTCSEEECTTSCCCEECTGGGTTCTTCCEEECCSSCCCEECTTTGGGSTTCCEEECCSSCCS-SCCTTTTTCSS
T ss_pred cccc--ccCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCceeChhhccCCCCCCEEECCCCcCc-cCChhhccCCC
Confidence 4333 79999999999999888899999999999999999999888888999999999999999999 78888999999
Q ss_pred CCeEEccCCCCCCCCcccccC------CcccccccccCccccC--CCCccccccCccceEeccCCC
Q 005040 239 LIDLDLSRNQLSSDIPSTIGT------LKNLETLSLAGNQFQG--PIPESVGNLISLESLDFSNNN 296 (717)
Q Consensus 239 L~~L~l~~N~l~~~~~~~~~~------l~~L~~L~l~~N~l~~--~~~~~~~~l~~L~~L~L~~N~ 296 (717)
|++|++++|.|++..+..|.. .+.|+.|++++|++.. ..|..|..+.+|+.++|++|+
T Consensus 265 L~~L~l~~N~i~~~~~~~f~~~~~~~~~~~l~~l~l~~N~~~~~~i~~~~f~~~~~l~~l~L~~N~ 330 (330)
T 1xku_A 265 IQVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQYWEIQPSTFRCVYVRAAVQLGNYK 330 (330)
T ss_dssp CCEEECCSSCCCCCCTTSSSCSSCCTTSCCCSEEECCSSSSCGGGSCGGGGTTCCCGGGEEC----
T ss_pred cCEEECCCCcCCccChhhcCCcccccccccccceEeecCcccccccCccccccccceeEEEecccC
Confidence 999999999999877777754 3789999999999864 667889999999999999985
No 289
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=100.00 E-value=1.2e-33 Score=295.72 Aligned_cols=277 Identities=24% Similarity=0.314 Sum_probs=244.3
Q ss_pred CCCCCccccCCCCCcEEECCCCcceecCCcCCCCCCCCCEEEcccccccCccCCcccccccccccCccCCcEEeccCCCC
Q 005040 1 MGTIPNSITNATKLIGLDLGLNSFSGHIPNTFGNLRHLSVLSLMMNNLTTESSSADQWSFLSSLTNCRNLANLALASNPL 80 (717)
Q Consensus 1 ~~~iP~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~l~~l~~L~~L~L~~N~l 80 (717)
+.+||..+. ++|++|+|++|.|+++.+..|.++++|++|+|++|+|+.+.+. .|.++++|++|+|++|++
T Consensus 45 l~~ip~~~~--~~l~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~--------~~~~l~~L~~L~L~~n~l 114 (332)
T 2ft3_A 45 LKAVPKEIS--PDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISKIHEK--------AFSPLRKLQKLYISKNHL 114 (332)
T ss_dssp CSSCCSCCC--TTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECGG--------GSTTCTTCCEEECCSSCC
T ss_pred ccccCCCCC--CCCeEEECCCCcCCccCHhHhhCCCCCcEEECCCCccCccCHh--------HhhCcCCCCEEECCCCcC
Confidence 467888775 6899999999999998899999999999999999999987644 389999999999999999
Q ss_pred cccCCcchhccccccceeeecCCcceecCCccccCCCCCcEEEccCCCCcc--cCCccccccCCCCEEeccCCcccccCC
Q 005040 81 GGILPPLIGNFSASLQNIYAFECKLGGSIPKEIGNLRGLIVLSLGFNDLNG--TIPTSIGTLQQLQGFYVPENNLQGYVP 158 (717)
Q Consensus 81 ~~~~~~~~~~l~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~--~~~~~~~~l~~L~~L~l~~n~i~~~~~ 158 (717)
+. +|..+. ++|++|++++|++....+..|.++++|++|++++|.++. ..+..+..+ +|++|++++|++++. |
T Consensus 115 ~~-l~~~~~---~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l-~L~~L~l~~n~l~~l-~ 188 (332)
T 2ft3_A 115 VE-IPPNLP---SSLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGL-KLNYLRISEAKLTGI-P 188 (332)
T ss_dssp CS-CCSSCC---TTCCEEECCSSCCCCCCSGGGSSCSSCCEEECCSCCCBGGGSCTTSSCSC-CCSCCBCCSSBCSSC-C
T ss_pred Cc-cCcccc---ccCCEEECCCCccCccCHhHhCCCccCCEEECCCCccccCCCCcccccCC-ccCEEECcCCCCCcc-C
Confidence 94 454443 679999999999998777889999999999999999963 677888888 999999999999964 4
Q ss_pred ccccCCCCCCEEeccCCcCcccCCccccCCCCCCeEEecCccccCCCChhhhcccCCCeEEccCCcCcccCCccccCCCC
Q 005040 159 HDLCHLERLNILNLSGNKLSGAIPQCLASLTSLRSLYLQSNKLSSSLPSSLWSLEYILRINLSSNSLKGTLPSNIQKLNV 238 (717)
Q Consensus 159 ~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~ 238 (717)
..+. ++|++|+|++|.+++..+..|..+++|+.|+|++|++++..+..+..+++|+.|+|++|+++ .+|..+..+++
T Consensus 189 ~~~~--~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~-~lp~~l~~l~~ 265 (332)
T 2ft3_A 189 KDLP--ETLNELHLDHNKIQAIELEDLLRYSKLYRLGLGHNQIRMIENGSLSFLPTLRELHLDNNKLS-RVPAGLPDLKL 265 (332)
T ss_dssp SSSC--SSCSCCBCCSSCCCCCCTTSSTTCTTCSCCBCCSSCCCCCCTTGGGGCTTCCEEECCSSCCC-BCCTTGGGCTT
T ss_pred cccc--CCCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCCcCChhHhhCCCCCCEEECCCCcCe-ecChhhhcCcc
Confidence 4443 79999999999999888889999999999999999999888889999999999999999999 78888999999
Q ss_pred CCeEEccCCCCCCCCcccccC------CcccccccccCcccc--CCCCccccccCccceEeccCCC
Q 005040 239 LIDLDLSRNQLSSDIPSTIGT------LKNLETLSLAGNQFQ--GPIPESVGNLISLESLDFSNNN 296 (717)
Q Consensus 239 L~~L~l~~N~l~~~~~~~~~~------l~~L~~L~l~~N~l~--~~~~~~~~~l~~L~~L~L~~N~ 296 (717)
|+.|++++|.|++..+..|.. ..+|+.|++++|++. +..|..|..+++|+.|+|++|+
T Consensus 266 L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~l~~L~l~~N~~~~~~~~~~~~~~l~~L~~l~l~~n~ 331 (332)
T 2ft3_A 266 LQVVYLHTNNITKVGVNDFCPVGFGVKRAYYNGISLFNNPVPYWEVQPATFRCVTDRLAIQFGNYK 331 (332)
T ss_dssp CCEEECCSSCCCBCCTTSSSCSSCCSSSCCBSEEECCSSSSCGGGSCGGGGTTBCCSTTEEC----
T ss_pred CCEEECCCCCCCccChhHccccccccccccccceEeecCcccccccCcccccccchhhhhhccccc
Confidence 999999999999877777765 467999999999997 6778889999999999999985
No 290
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=100.00 E-value=1.8e-33 Score=321.78 Aligned_cols=331 Identities=24% Similarity=0.246 Sum_probs=260.3
Q ss_pred CCCCccccCCCC---CcEEECCCCcceecCCcCCCCCCCCCEEEcccccccCccCCcccccccccccCccCCcEEeccCC
Q 005040 2 GTIPNSITNATK---LIGLDLGLNSFSGHIPNTFGNLRHLSVLSLMMNNLTTESSSADQWSFLSSLTNCRNLANLALASN 78 (717)
Q Consensus 2 ~~iP~~~~~l~~---L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~l~~l~~L~~L~L~~N 78 (717)
+++|++...+.. -+..+.++.+++ .+|..+. +++++|+|++|+|+.+++.+ |.++++|++|+|++|
T Consensus 18 ~~~p~~~~~c~~~~~~~~~~c~~~~l~-~vP~~lp--~~~~~LdLs~N~i~~l~~~~--------f~~l~~L~~L~Ls~N 86 (635)
T 4g8a_A 18 SSIPESWEPCVEVVPNITYQCMELNFY-KIPDNLP--FSTKNLDLSFNPLRHLGSYS--------FFSFPELQVLDLSRC 86 (635)
T ss_dssp -------CCSEEEETTTEEECTTSCCS-SCCSSSC--TTCCEEECTTSCCCEECTTT--------TTTCTTCCEEECTTC
T ss_pred CCCCCCCCCccccCCCCEEECCCCCcC-ccCCCCC--cCCCEEEeeCCCCCCCCHHH--------HhCCCCCCEEECCCC
Confidence 356776655432 245688888898 5676553 48999999999999998655 899999999999999
Q ss_pred CCcccCCcchhccccccceeeecCCcceecCCccccCCCCCcEEEccCCCCcccCCccccccCCCCEEeccCCccccc-C
Q 005040 79 PLGGILPPLIGNFSASLQNIYAFECKLGGSIPKEIGNLRGLIVLSLGFNDLNGTIPTSIGTLQQLQGFYVPENNLQGY-V 157 (717)
Q Consensus 79 ~l~~~~~~~~~~l~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~i~~~-~ 157 (717)
+|+++.+.+|..+ ++|++|+|++|++.+..+..|.++++|++|+|++|+++++.+..|+++++|++|+|++|.++.. .
T Consensus 87 ~i~~i~~~~f~~L-~~L~~L~Ls~N~l~~l~~~~f~~L~~L~~L~Ls~N~l~~l~~~~~~~L~~L~~L~Ls~N~l~~~~~ 165 (635)
T 4g8a_A 87 EIQTIEDGAYQSL-SHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKL 165 (635)
T ss_dssp CCCEECTTTTTTC-TTCCEEECTTCCCCEECGGGGTTCTTCCEEECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCC
T ss_pred cCCCcChhHhcCC-CCCCEEEccCCcCCCCCHHHhcCCCCCCEEECCCCcCCCCChhhhhcCcccCeeccccCccccCCC
Confidence 9998888889988 6899999999999988888999999999999999999988888899999999999999999864 5
Q ss_pred CccccCCCCCCEEeccCCcCcccCCccccCC-------------------------------------------------
Q 005040 158 PHDLCHLERLNILNLSGNKLSGAIPQCLASL------------------------------------------------- 188 (717)
Q Consensus 158 ~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l------------------------------------------------- 188 (717)
|..+..+++|++|+|++|+|++..+..|..+
T Consensus 166 ~~~~~~l~~L~~L~L~~N~l~~~~~~~l~~L~~l~~~~~~~~ls~n~l~~i~~~~~~~~~~~~l~l~~n~~~~~~~~~~~ 245 (635)
T 4g8a_A 166 PEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIRLHKLTLRNNFDSLNVMKTCI 245 (635)
T ss_dssp CGGGGGCTTCCEEECCSSCCCEECGGGGHHHHTCTTCCCEEECTTCCCCEECTTTTTTCEEEEEEEESCCSSHHHHHHHH
T ss_pred chhhccchhhhhhcccCccccccccccccchhhhhhhhhhhhcccCcccccCcccccchhhhhhhhhcccccccccchhh
Confidence 7788999999999999999875544333221
Q ss_pred --------------------------------------------------------------------------------
Q 005040 189 -------------------------------------------------------------------------------- 188 (717)
Q Consensus 189 -------------------------------------------------------------------------------- 188 (717)
T Consensus 246 ~~l~~l~~~~l~~~~~~~~~~l~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~ 325 (635)
T 4g8a_A 246 QGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDGIIDLFNCLTNVSSFSLVSVTIERVKDFS 325 (635)
T ss_dssp HTTTTCEEEEEEEECCTTSCCCSCCCTTTTGGGGGSEEEEEEEECCCSCEEECTTTTGGGTTCSEEEEESCEEEECGGGG
T ss_pred cCCcccccccccccccccccccccccccccccccchhhhhhhhhhhcccccchhhhhhhhcccccccccccccccccccc
Confidence
Q ss_pred --CCCCeEEecCccccCCCCh-------------------hhhcccCCCeEEccCCcCccc-------------------
Q 005040 189 --TSLRSLYLQSNKLSSSLPS-------------------SLWSLEYILRINLSSNSLKGT------------------- 228 (717)
Q Consensus 189 --~~L~~L~L~~N~l~~~~~~-------------------~~~~l~~L~~L~l~~N~l~~~------------------- 228 (717)
.+|+.|++.+|.+....+. ....+++|+.|++++|.+...
T Consensus 326 ~~~~L~~L~l~~~~~~~~~~~~l~~L~~l~l~~n~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~~~ 405 (635)
T 4g8a_A 326 YNFGWQHLELVNCKFGQFPTLKLKSLKRLTFTSNKGGNAFSEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTISLKYLDLS 405 (635)
T ss_dssp SCCCCSEEEEESCEESSCCCCBCTTCCEEEEESCCSCCBCCCCBCTTCCEEECCSSCCBEEEECCHHHHSCSCCCEEECC
T ss_pred cchhhhhhhcccccccCcCcccchhhhhcccccccCCCCcccccccccccchhhccccccccccccchhhhhhhhhhhcc
Confidence 1233444444443322111 112356677777777765310
Q ss_pred -------------------------------CCccccCCCCCCeEEccCCCCCCCCcccccCCcccccccccCcccc-CC
Q 005040 229 -------------------------------LPSNIQKLNVLIDLDLSRNQLSSDIPSTIGTLKNLETLSLAGNQFQ-GP 276 (717)
Q Consensus 229 -------------------------------~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~-~~ 276 (717)
.+..|..+.+++.++++.|.+.+..+..+..+++|+.|++++|.+. +.
T Consensus 406 ~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~l~~l~~l~ls~n~l~~~~~~~~~~~~~L~~L~Ls~N~~~~~~ 485 (635)
T 4g8a_A 406 FNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENF 485 (635)
T ss_dssp SCSEEEECSCCTTCTTCCEEECTTSEEESTTSSCTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGE
T ss_pred ccccccccccccccccccchhhhhccccccccccccccccccccccccccccccccccccccchhhhhhhhhhccccccc
Confidence 1234567888999999999999988999999999999999999854 45
Q ss_pred CCccccccCccceEeccCCCCCCCCcccccccccccEEEccCCcccccccc-cccccccccccccCCcc
Q 005040 277 IPESVGNLISLESLDFSNNNLSGKIPKSLEALSHLKQFNVSHNRLEGEIPV-KGSFKDFSAQSYFGNYA 344 (717)
Q Consensus 277 ~~~~~~~l~~L~~L~L~~N~~~~~~~~~~~~l~~L~~L~l~~N~l~~~~p~-~~~~~~~~~~~~~~n~~ 344 (717)
.|..|..+++|++|+|++|++++..|..|.++++|++|+|++|++++..|. ...++.+..+.+.+|.-
T Consensus 486 ~~~~~~~l~~L~~L~Ls~N~L~~l~~~~f~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N~l 554 (635)
T 4g8a_A 486 LPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHI 554 (635)
T ss_dssp ECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCBCCCGGGTTCTTCCEEECTTSCC
T ss_pred CchhhhhccccCEEECCCCccCCcChHHHcCCCCCCEEECCCCcCCCCChhHHhCCCCCCEEECCCCcC
Confidence 788999999999999999999999999999999999999999999987765 35566777777777654
No 291
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=100.00 E-value=1.7e-33 Score=308.69 Aligned_cols=291 Identities=28% Similarity=0.402 Sum_probs=249.7
Q ss_pred CCCCccccCCCCCcEEECCCCcceecCCcCCCCCCCCCEEEcccccccCccCCcccccccccccCccCCcEEeccCCCCc
Q 005040 2 GTIPNSITNATKLIGLDLGLNSFSGHIPNTFGNLRHLSVLSLMMNNLTTESSSADQWSFLSSLTNCRNLANLALASNPLG 81 (717)
Q Consensus 2 ~~iP~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~l~~l~~L~~L~L~~N~l~ 81 (717)
+.+|. +.++++|++|+|++|.+++..+ |.++++|++|+|++|.++.+++ +..+++|++|+|++|.++
T Consensus 81 ~~~~~-~~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~L~~n~l~~~~~----------~~~l~~L~~L~l~~n~l~ 147 (466)
T 1o6v_A 81 TDITP-LKNLTKLVDILMNNNQIADITP--LANLTNLTGLTLFNNQITDIDP----------LKNLTNLNRLELSSNTIS 147 (466)
T ss_dssp CCCGG-GTTCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCCCGG----------GTTCTTCSEEEEEEEEEC
T ss_pred CCchh-hhccccCCEEECCCCccccChh--hcCCCCCCEEECCCCCCCCChH----------HcCCCCCCEEECCCCccC
Confidence 45666 8888999999999999886554 8889999999999998887652 667788888888888776
Q ss_pred ccCC-------------------cchhccccccceeeecCCcceecCCccccCCCCCcEEEccCCCCcccCCccccccCC
Q 005040 82 GILP-------------------PLIGNFSASLQNIYAFECKLGGSIPKEIGNLRGLIVLSLGFNDLNGTIPTSIGTLQQ 142 (717)
Q Consensus 82 ~~~~-------------------~~~~~l~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~ 142 (717)
+... ..+..+ ++|++|++++|.+... ..+..+++|++|++++|.+++..+ ++.+++
T Consensus 148 ~~~~~~~l~~L~~L~l~~~~~~~~~~~~l-~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~l~~n~l~~~~~--~~~l~~ 222 (466)
T 1o6v_A 148 DISALSGLTSLQQLSFGNQVTDLKPLANL-TTLERLDISSNKVSDI--SVLAKLTNLESLIATNNQISDITP--LGILTN 222 (466)
T ss_dssp CCGGGTTCTTCSEEEEEESCCCCGGGTTC-TTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCCCGG--GGGCTT
T ss_pred CChhhccCCcccEeecCCcccCchhhccC-CCCCEEECcCCcCCCC--hhhccCCCCCEEEecCCccccccc--ccccCC
Confidence 4311 124444 5799999999999854 458999999999999999997655 888999
Q ss_pred CCEEeccCCcccccCCccccCCCCCCEEeccCCcCcccCCccccCCCCCCeEEecCccccCCCChhhhcccCCCeEEccC
Q 005040 143 LQGFYVPENNLQGYVPHDLCHLERLNILNLSGNKLSGAIPQCLASLTSLRSLYLQSNKLSSSLPSSLWSLEYILRINLSS 222 (717)
Q Consensus 143 L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~ 222 (717)
|++|++++|++++. ..+..+++|+.|++++|.+++..+ +..+++|+.|++++|.+++..+ +..+++|+.|++++
T Consensus 223 L~~L~l~~n~l~~~--~~l~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~L~~ 296 (466)
T 1o6v_A 223 LDELSLNGNQLKDI--GTLASLTNLTDLDLANNQISNLAP--LSGLTKLTELKLGANQISNISP--LAGLTALTNLELNE 296 (466)
T ss_dssp CCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCCCGG--GTTCTTCSEEECCSSCCCCCGG--GTTCTTCSEEECCS
T ss_pred CCEEECCCCCcccc--hhhhcCCCCCEEECCCCccccchh--hhcCCCCCEEECCCCccCcccc--ccCCCccCeEEcCC
Confidence 99999999999965 468899999999999999997654 8999999999999999996544 88999999999999
Q ss_pred CcCcccCCccccCCCCCCeEEccCCCCCCCCcccccCCcccccccccCccccCCCCccccccCccceEeccCCCCCCCCc
Q 005040 223 NSLKGTLPSNIQKLNVLIDLDLSRNQLSSDIPSTIGTLKNLETLSLAGNQFQGPIPESVGNLISLESLDFSNNNLSGKIP 302 (717)
Q Consensus 223 N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~~~~~ 302 (717)
|++++..+ +..+++|+.|++++|.+++..| +..+++|++|++++|++++. ..+.++++|+.|++++|++++..|
T Consensus 297 n~l~~~~~--~~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~l~~n~l~~~~~ 370 (466)
T 1o6v_A 297 NQLEDISP--ISNLKNLTYLTLYFNNISDISP--VSSLTKLQRLFFYNNKVSDV--SSLANLTNINWLSAGHNQISDLTP 370 (466)
T ss_dssp SCCSCCGG--GGGCTTCSEEECCSSCCSCCGG--GGGCTTCCEEECCSSCCCCC--GGGTTCTTCCEEECCSSCCCBCGG
T ss_pred CcccCchh--hcCCCCCCEEECcCCcCCCchh--hccCccCCEeECCCCccCCc--hhhccCCCCCEEeCCCCccCccch
Confidence 99996544 8999999999999999998665 78999999999999999865 578999999999999999998777
Q ss_pred ccccccccccEEEccCCccccc
Q 005040 303 KSLEALSHLKQFNVSHNRLEGE 324 (717)
Q Consensus 303 ~~~~~l~~L~~L~l~~N~l~~~ 324 (717)
+..+++|+.|++++|++++.
T Consensus 371 --~~~l~~L~~L~l~~n~~~~~ 390 (466)
T 1o6v_A 371 --LANLTRITQLGLNDQAWTNA 390 (466)
T ss_dssp --GTTCTTCCEEECCCEEEECC
T ss_pred --hhcCCCCCEEeccCCcccCC
Confidence 89999999999999999984
No 292
>2vuw_A Serine/threonine-protein kinase haspin; cell cycle, transferase, CAsp8, nucleotide binding; HET: MSE 5ID MPD; 1.80A {Homo sapiens} PDB: 3f2n_A* 3e7v_A* 3dlz_A* 3fmd_A* 3iq7_A* 2wb8_A
Probab=100.00 E-value=2.5e-35 Score=309.02 Aligned_cols=243 Identities=19% Similarity=0.233 Sum_probs=181.9
Q ss_pred hccCCccccccccccEEEEEEEecCCCeEEEEEechhh--------HHHHHHHHHHHHHHHhcC---------CCceeeE
Q 005040 426 TDEFNECNLLGTGGFGSVYKGTLSDGTNVAIKIFNLQL--------ERAFRSFDSECEILRNVR---------HRNLLKI 488 (717)
Q Consensus 426 ~~~~~~~~~lg~G~~g~V~~~~~~~~~~vavK~~~~~~--------~~~~~~~~~e~~~l~~l~---------hpniv~~ 488 (717)
.++|++.+.||+|+||.||+|+. +|+.||||++.... ....+.+.+|++++++++ ||||+++
T Consensus 19 ~~~y~~~~~lG~G~~g~V~~~~~-~~~~vAvK~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~~l~~~~~~~h~niv~l 97 (336)
T 2vuw_A 19 TEKLQRCEKIGEGVFGEVFQTIA-DHTPVAIKIIAIEGPDLVNGSHQKTFEEILPEIIISKELSLLSGEVCNRTEGFIGL 97 (336)
T ss_dssp HHHHHTCEEEEEETTEEEEEEEE-TTEEEEEEEEEESCSSCBTTBCCBCHHHHHHHHHHHHHHHHGGGCSSSBCCCBCCE
T ss_pred cccchheeeecccCceEEEEEEe-CCceEEEEEEecCCccccccccchhHHHHHHHHHHHHHHHHhhccccccCCchhhh
Confidence 47899999999999999999998 68999999997542 223367888999999886 5555555
Q ss_pred ee-----------------eeec-------------CCeeEEEEEccCCCCHHHHHhhCCCCCCHHHHHHHHHHHHHHHH
Q 005040 489 LG-----------------SCSN-------------LDFKALVLEFMPNGSLEKWLYSHNYFLDILQRLNIMIDVGSALE 538 (717)
Q Consensus 489 ~~-----------------~~~~-------------~~~~~lv~e~~~~g~L~~~l~~~~~~~~~~~~~~i~~~i~~~l~ 538 (717)
.+ ++.+ ....|+||||+++|++.+.+.+ ..+++..+..++.|++.||+
T Consensus 98 ~~~~~~~~~~hp~iv~~~~~~~~~~~~~~~~~~~~~~~~~~lv~E~~~~g~ll~~~~~--~~~~~~~~~~i~~qi~~aL~ 175 (336)
T 2vuw_A 98 NSVHCVQGSYPPLLLKAWDHYNSTKGSANDRPDFFKDDQLFIVLEFEFGGIDLEQMRT--KLSSLATAKSILHQLTASLA 175 (336)
T ss_dssp EEEEEEESSCCHHHHHHHHHHHHHTCCSSCCSCCCCTTCEEEEEEEECCCEETGGGTT--TCCCHHHHHHHHHHHHHHHH
T ss_pred cceeEecCCCcHHHHHHHHHHhhhccccccCccccccCeEEEEEEecCCCccHHHHHh--cCCCHHHHHHHHHHHHHHHH
Confidence 55 4433 6789999999999977666654 34899999999999999999
Q ss_pred HHhhcCCCCCeEecCCCCCCeeeCCCC--------------------cEEEeeeccccccCCCCCceeeeccccCccccC
Q 005040 539 YLHHCHSSAPIIHCDLKPTNILLDENM--------------------VAHVSDFGISKLLGEGEDSVIQTMTMATIGYMA 598 (717)
Q Consensus 539 ~LH~~~~~~~ivH~dlk~~Nill~~~~--------------------~~kl~Dfgl~~~~~~~~~~~~~~~~~~t~~y~a 598 (717)
|||+ +.+|+||||||+|||++.++ .+||+|||+++..... ...||+.|+|
T Consensus 176 ~lH~---~~~ivHrDlKp~NILl~~~~~~~~~~~~~~~~~~~~~~~~~vkL~DFG~a~~~~~~-------~~~gt~~y~a 245 (336)
T 2vuw_A 176 VAEA---SLRFEHRDLHWGNVLLKKTSLKKLHYTLNGKSSTIPSCGLQVSIIDYTLSRLERDG-------IVVFCDVSMD 245 (336)
T ss_dssp HHHH---HHCCBCSCCCGGGEEEEECSCSEEEEEETTEEEEEECTTEEEEECCCTTCBEEETT-------EEECCCCTTC
T ss_pred HHHH---hCCEeECCCCHHHEEEeccCCcceeeeccCccccccCCCceEEEeeccccEecCCC-------cEEEeecccC
Confidence 9992 25799999999999999887 9999999999876432 2368999999
Q ss_pred CCccCCCCcCcccchhhHHHH-HHHHHhCCCCCCccccCcchHHHHHHhhCCCchhhhccccchhhhhhhhhhHHHHHHH
Q 005040 599 PEYGSEGIVSTKCDVYSYGVL-LMETFTEKKPTDEMFTGEMSLRRWVKESLPHRLTEVVDANLVREEQAFSDKMDCLFSI 677 (717)
Q Consensus 599 PE~~~~~~~~~~~Dvws~G~i-l~el~tg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 677 (717)
||++.+.. +.++||||+|++ .+++++|..||... .|..... ..+.................++.++
T Consensus 246 PE~~~g~~-~~~~Diwsl~~~~~~~~~~g~~p~~~~--------~~~~~~~----~~~~~~~~~~~~~~~~~~~~~s~~~ 312 (336)
T 2vuw_A 246 EDLFTGDG-DYQFDIYRLMKKENNNRWGEYHPYSNV--------LWLHYLT----DKMLKQMTFKTKCNTPAMKQIKRKI 312 (336)
T ss_dssp SGGGCCCS-SHHHHHHHHHHHHHTTCTTSCCTHHHH--------HHHHHHH----HHHHHTCCCSSCCCSHHHHHHHHHH
T ss_pred hhhhcCCC-ccceehhhhhCCCCcccccccCCCcch--------hhhhHHH----HhhhhhhccCcccchhhhhhcCHHH
Confidence 99988766 899999998777 77888999997431 1111000 0000000000000111233567889
Q ss_pred HHHHhhccCCCCCCCCCHHHHH
Q 005040 678 MDLALDCCMDTPHKRIHMTDAA 699 (717)
Q Consensus 678 ~~li~~cl~~~P~~Rpt~~ev~ 699 (717)
.+++.+||+.| |++|++
T Consensus 313 ~dli~~~L~~d-----sa~e~l 329 (336)
T 2vuw_A 313 QEFHRTMLNFS-----SATDLL 329 (336)
T ss_dssp HHHHHHGGGSS-----SHHHHH
T ss_pred HHHHHHHhccC-----CHHHHH
Confidence 99999999976 898887
No 293
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=100.00 E-value=8.8e-33 Score=300.59 Aligned_cols=283 Identities=22% Similarity=0.180 Sum_probs=175.8
Q ss_pred CccccCCCCCcEEECCCCcceecCCcCCCCCCCCCEEEcccccccCccCCcccccccccccCccCCcEEeccCCCCcccC
Q 005040 5 PNSITNATKLIGLDLGLNSFSGHIPNTFGNLRHLSVLSLMMNNLTTESSSADQWSFLSSLTNCRNLANLALASNPLGGIL 84 (717)
Q Consensus 5 P~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~l~~l~~L~~L~L~~N~l~~~~ 84 (717)
|..++++++|++|+|++|.|++. | .|..+++|++|+|++|+|+.++ +..+++|++|+|++|++++.
T Consensus 35 ~~~~~~l~~L~~L~Ls~n~l~~~-~-~l~~l~~L~~L~Ls~n~l~~~~-----------~~~l~~L~~L~Ls~N~l~~~- 100 (457)
T 3bz5_A 35 TISEEQLATLTSLDCHNSSITDM-T-GIEKLTGLTKLICTSNNITTLD-----------LSQNTNLTYLACDSNKLTNL- 100 (457)
T ss_dssp EEEHHHHTTCCEEECCSSCCCCC-T-TGGGCTTCSEEECCSSCCSCCC-----------CTTCTTCSEEECCSSCCSCC-
T ss_pred ccChhHcCCCCEEEccCCCcccC-h-hhcccCCCCEEEccCCcCCeEc-----------cccCCCCCEEECcCCCCcee-
Confidence 44566778888888888888754 4 5777888888888888877753 56777778888888877754
Q ss_pred CcchhccccccceeeecCCcceecCCccccCCCCCcEEEccCCCCcccCCccccccCCCCEEeccCCcccccCCccccCC
Q 005040 85 PPLIGNFSASLQNIYAFECKLGGSIPKEIGNLRGLIVLSLGFNDLNGTIPTSIGTLQQLQGFYVPENNLQGYVPHDLCHL 164 (717)
Q Consensus 85 ~~~~~~l~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~l 164 (717)
+ +..+ ++|++|++++|++++. + ++.+++|++|++++|++++. .++++++|++|++++|+..+.. .+..+
T Consensus 101 ~--~~~l-~~L~~L~L~~N~l~~l-~--~~~l~~L~~L~l~~N~l~~l---~l~~l~~L~~L~l~~n~~~~~~--~~~~l 169 (457)
T 3bz5_A 101 D--VTPL-TKLTYLNCDTNKLTKL-D--VSQNPLLTYLNCARNTLTEI---DVSHNTQLTELDCHLNKKITKL--DVTPQ 169 (457)
T ss_dssp C--CTTC-TTCCEEECCSSCCSCC-C--CTTCTTCCEEECTTSCCSCC---CCTTCTTCCEEECTTCSCCCCC--CCTTC
T ss_pred e--cCCC-CcCCEEECCCCcCCee-c--CCCCCcCCEEECCCCcccee---ccccCCcCCEEECCCCCccccc--ccccC
Confidence 2 5555 5677778877777753 3 77777777777777777753 2667777777777777433333 35666
Q ss_pred CCCCEEeccCCcCcccCCccccCCCCCCeEEecCccccCCCChhhhcccCCCeEEccCCcCcccCCccccCCCCCCeEEc
Q 005040 165 ERLNILNLSGNKLSGAIPQCLASLTSLRSLYLQSNKLSSSLPSSLWSLEYILRINLSSNSLKGTLPSNIQKLNVLIDLDL 244 (717)
Q Consensus 165 ~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l 244 (717)
++|++|++++|++++ +| +..+++|+.|++++|++++. .+..+++|+.|++++|++++ +| +..+++|+.|++
T Consensus 170 ~~L~~L~ls~n~l~~-l~--l~~l~~L~~L~l~~N~l~~~---~l~~l~~L~~L~Ls~N~l~~-ip--~~~l~~L~~L~l 240 (457)
T 3bz5_A 170 TQLTTLDCSFNKITE-LD--VSQNKLLNRLNCDTNNITKL---DLNQNIQLTFLDCSSNKLTE-ID--VTPLTQLTYFDC 240 (457)
T ss_dssp TTCCEEECCSSCCCC-CC--CTTCTTCCEEECCSSCCSCC---CCTTCTTCSEEECCSSCCSC-CC--CTTCTTCSEEEC
T ss_pred CcCCEEECCCCccce-ec--cccCCCCCEEECcCCcCCee---ccccCCCCCEEECcCCcccc-cC--ccccCCCCEEEe
Confidence 777777777777765 33 56667777777777777643 26666777777777777765 33 666667777777
Q ss_pred cCCCCCCCCcccccCCc-------ccccccccCccccCCCCccccccCccceEeccCCCCCCCCcc--------cccccc
Q 005040 245 SRNQLSSDIPSTIGTLK-------NLETLSLAGNQFQGPIPESVGNLISLESLDFSNNNLSGKIPK--------SLEALS 309 (717)
Q Consensus 245 ~~N~l~~~~~~~~~~l~-------~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~~~~~~--------~~~~l~ 309 (717)
++|.+++..+..+..+. +|+.|++++|++.+.+| ++.+++|+.|+|++|+..+.+|. .+..++
T Consensus 241 ~~N~l~~~~~~~l~~L~~L~l~~n~L~~L~l~~n~~~~~~~--~~~l~~L~~L~Ls~n~~l~~l~~~~~~L~~L~l~~~~ 318 (457)
T 3bz5_A 241 SVNPLTELDVSTLSKLTTLHCIQTDLLEIDLTHNTQLIYFQ--AEGCRKIKELDVTHNTQLYLLDCQAAGITELDLSQNP 318 (457)
T ss_dssp CSSCCSCCCCTTCTTCCEEECTTCCCSCCCCTTCTTCCEEE--CTTCTTCCCCCCTTCTTCCEEECTTCCCSCCCCTTCT
T ss_pred eCCcCCCcCHHHCCCCCEEeccCCCCCEEECCCCccCCccc--ccccccCCEEECCCCcccceeccCCCcceEechhhcc
Confidence 77777664443333332 33444444444433333 23444455555555443333222 123334
Q ss_pred cccEEEccCCcccc
Q 005040 310 HLKQFNVSHNRLEG 323 (717)
Q Consensus 310 ~L~~L~l~~N~l~~ 323 (717)
+|+.|++++|++++
T Consensus 319 ~L~~L~L~~N~l~~ 332 (457)
T 3bz5_A 319 KLVYLYLNNTELTE 332 (457)
T ss_dssp TCCEEECTTCCCSC
T ss_pred cCCEEECCCCcccc
Confidence 44444444444444
No 294
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=100.00 E-value=2.5e-32 Score=297.01 Aligned_cols=285 Identities=19% Similarity=0.178 Sum_probs=242.8
Q ss_pred CCCCCccccCCCCCcEEECCCCcceecCCcCCCCCCCCCEEEcccccccCccCCcccccccccccCccCCcEEeccCCCC
Q 005040 1 MGTIPNSITNATKLIGLDLGLNSFSGHIPNTFGNLRHLSVLSLMMNNLTTESSSADQWSFLSSLTNCRNLANLALASNPL 80 (717)
Q Consensus 1 ~~~iP~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~l~~l~~L~~L~L~~N~l 80 (717)
++.+| ++..+++|++|+|++|+|+++ | |+.+++|++|+|++|+|+.++ +..+++|++|+|++|++
T Consensus 54 l~~~~-~l~~l~~L~~L~Ls~n~l~~~-~--~~~l~~L~~L~Ls~N~l~~~~-----------~~~l~~L~~L~L~~N~l 118 (457)
T 3bz5_A 54 ITDMT-GIEKLTGLTKLICTSNNITTL-D--LSQNTNLTYLACDSNKLTNLD-----------VTPLTKLTYLNCDTNKL 118 (457)
T ss_dssp CCCCT-TGGGCTTCSEEECCSSCCSCC-C--CTTCTTCSEEECCSSCCSCCC-----------CTTCTTCCEEECCSSCC
T ss_pred cccCh-hhcccCCCCEEEccCCcCCeE-c--cccCCCCCEEECcCCCCceee-----------cCCCCcCCEEECCCCcC
Confidence 34577 699999999999999999975 3 999999999999999999863 77899999999999999
Q ss_pred cccCCcchhccccccceeeecCCcceecCCccccCCCCCcEEEccCCCCcccCCccccccCCCCEEeccCCcccccCCcc
Q 005040 81 GGILPPLIGNFSASLQNIYAFECKLGGSIPKEIGNLRGLIVLSLGFNDLNGTIPTSIGTLQQLQGFYVPENNLQGYVPHD 160 (717)
Q Consensus 81 ~~~~~~~~~~l~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~ 160 (717)
++. + +..+ ++|++|++++|++++. .++++++|++|++++|...+.+ .+..+++|++|++++|++++. |
T Consensus 119 ~~l-~--~~~l-~~L~~L~l~~N~l~~l---~l~~l~~L~~L~l~~n~~~~~~--~~~~l~~L~~L~ls~n~l~~l-~-- 186 (457)
T 3bz5_A 119 TKL-D--VSQN-PLLTYLNCARNTLTEI---DVSHNTQLTELDCHLNKKITKL--DVTPQTQLTTLDCSFNKITEL-D-- 186 (457)
T ss_dssp SCC-C--CTTC-TTCCEEECTTSCCSCC---CCTTCTTCCEEECTTCSCCCCC--CCTTCTTCCEEECCSSCCCCC-C--
T ss_pred Cee-c--CCCC-CcCCEEECCCCcccee---ccccCCcCCEEECCCCCccccc--ccccCCcCCEEECCCCcccee-c--
Confidence 974 3 6666 6799999999999974 3899999999999999654444 588999999999999999975 3
Q ss_pred ccCCCCCCEEeccCCcCcccCCccccCCCCCCeEEecCccccCCCChhhhcccCCCeEEccCCcCcccCCccccCCC---
Q 005040 161 LCHLERLNILNLSGNKLSGAIPQCLASLTSLRSLYLQSNKLSSSLPSSLWSLEYILRINLSSNSLKGTLPSNIQKLN--- 237 (717)
Q Consensus 161 ~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~--- 237 (717)
+..+++|+.|++++|++++. .++.+++|+.|++++|++++ +| +..+++|+.|++++|++++..+..+..+.
T Consensus 187 l~~l~~L~~L~l~~N~l~~~---~l~~l~~L~~L~Ls~N~l~~-ip--~~~l~~L~~L~l~~N~l~~~~~~~l~~L~~L~ 260 (457)
T 3bz5_A 187 VSQNKLLNRLNCDTNNITKL---DLNQNIQLTFLDCSSNKLTE-ID--VTPLTQLTYFDCSVNPLTELDVSTLSKLTTLH 260 (457)
T ss_dssp CTTCTTCCEEECCSSCCSCC---CCTTCTTCSEEECCSSCCSC-CC--CTTCTTCSEEECCSSCCSCCCCTTCTTCCEEE
T ss_pred cccCCCCCEEECcCCcCCee---ccccCCCCCEEECcCCcccc-cC--ccccCCCCEEEeeCCcCCCcCHHHCCCCCEEe
Confidence 88999999999999999975 38899999999999999997 55 88999999999999999987655555544
Q ss_pred ----CCCeEEccCCCCCCCCcccccCCcccccccccCccccCCCCc--------cccccCccceEeccCCCCCCCCcccc
Q 005040 238 ----VLIDLDLSRNQLSSDIPSTIGTLKNLETLSLAGNQFQGPIPE--------SVGNLISLESLDFSNNNLSGKIPKSL 305 (717)
Q Consensus 238 ----~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~--------~~~~l~~L~~L~L~~N~~~~~~~~~~ 305 (717)
+|+.|++++|.+.+.+| ++.+++|+.|++++|+..+.+|. .+.++++|+.|+|++|++++. + +
T Consensus 261 l~~n~L~~L~l~~n~~~~~~~--~~~l~~L~~L~Ls~n~~l~~l~~~~~~L~~L~l~~~~~L~~L~L~~N~l~~l-~--l 335 (457)
T 3bz5_A 261 CIQTDLLEIDLTHNTQLIYFQ--AEGCRKIKELDVTHNTQLYLLDCQAAGITELDLSQNPKLVYLYLNNTELTEL-D--V 335 (457)
T ss_dssp CTTCCCSCCCCTTCTTCCEEE--CTTCTTCCCCCCTTCTTCCEEECTTCCCSCCCCTTCTTCCEEECTTCCCSCC-C--C
T ss_pred ccCCCCCEEECCCCccCCccc--ccccccCCEEECCCCcccceeccCCCcceEechhhcccCCEEECCCCccccc-c--c
Confidence 45666666666655555 56789999999999987665553 356778999999999999984 3 8
Q ss_pred cccccccEEEccCCcccc
Q 005040 306 EALSHLKQFNVSHNRLEG 323 (717)
Q Consensus 306 ~~l~~L~~L~l~~N~l~~ 323 (717)
..+++|+.|++++|++++
T Consensus 336 ~~l~~L~~L~l~~N~l~~ 353 (457)
T 3bz5_A 336 SHNTKLKSLSCVNAHIQD 353 (457)
T ss_dssp TTCTTCSEEECCSSCCCB
T ss_pred ccCCcCcEEECCCCCCCC
Confidence 899999999999999997
No 295
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.97 E-value=8.5e-32 Score=284.14 Aligned_cols=278 Identities=18% Similarity=0.178 Sum_probs=190.2
Q ss_pred CCEEEcccccccCccCCcccccccccccCccCCcEEeccCCCCcccCCcchhccccccceeeecCCcceecCCccccCCC
Q 005040 38 LSVLSLMMNNLTTESSSADQWSFLSSLTNCRNLANLALASNPLGGILPPLIGNFSASLQNIYAFECKLGGSIPKEIGNLR 117 (717)
Q Consensus 38 L~~L~L~~n~l~~~~~~~~~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~l~~~L~~L~l~~n~l~~~~~~~~~~l~ 117 (717)
....++++|.++.+|... .++|++|+|++|.+++..+..+..+ ++|++|++++|++++..+..|.+++
T Consensus 33 ~~~c~~~~~~l~~iP~~~-----------~~~L~~L~l~~n~i~~~~~~~~~~l-~~L~~L~L~~n~l~~~~~~~~~~l~ 100 (353)
T 2z80_A 33 NGICKGSSGSLNSIPSGL-----------TEAVKSLDLSNNRITYISNSDLQRC-VNLQALVLTSNGINTIEEDSFSSLG 100 (353)
T ss_dssp TSEEECCSTTCSSCCTTC-----------CTTCCEEECTTSCCCEECTTTTTTC-TTCCEEECTTSCCCEECTTTTTTCT
T ss_pred CeEeeCCCCCcccccccc-----------cccCcEEECCCCcCcccCHHHhccC-CCCCEEECCCCccCccCHhhcCCCC
Confidence 344555555555554321 1355555666665555444455554 4466666666666655566677777
Q ss_pred CCcEEEccCCCCcccCCccccccCCCCEEeccCCcccccCC-ccccCCCCCCEEeccCC-cCcccCCccccCCCCCCeEE
Q 005040 118 GLIVLSLGFNDLNGTIPTSIGTLQQLQGFYVPENNLQGYVP-HDLCHLERLNILNLSGN-KLSGAIPQCLASLTSLRSLY 195 (717)
Q Consensus 118 ~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~i~~~~~-~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~ 195 (717)
+|++|+|++|+++...+..|.++++|++|++++|+++...+ ..|.++++|++|++++| .++...+..|.++++|++|+
T Consensus 101 ~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~ 180 (353)
T 2z80_A 101 SLEHLDLSYNYLSNLSSSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELE 180 (353)
T ss_dssp TCCEEECCSSCCSSCCHHHHTTCTTCSEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEE
T ss_pred CCCEEECCCCcCCcCCHhHhCCCccCCEEECCCCCCcccCchhhhccCCCCcEEECCCCccccccCHHHccCCCCCCEEE
Confidence 77777777777775555557777777777777777775544 46777777777777777 46655566777777777777
Q ss_pred ecCccccCCCChhhhcccCCCeEEccCCcCcccCCccccCCCCCCeEEccCCCCCCCCccccc---CCcccccccccCcc
Q 005040 196 LQSNKLSSSLPSSLWSLEYILRINLSSNSLKGTLPSNIQKLNVLIDLDLSRNQLSSDIPSTIG---TLKNLETLSLAGNQ 272 (717)
Q Consensus 196 L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~---~l~~L~~L~l~~N~ 272 (717)
+++|++++..|..+..+++|++|++++|.++......+..+++|+.|++++|.+++..+..+. ....++.+++++|.
T Consensus 181 l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~~~~~~l~~l~L~~~~ 260 (353)
T 2z80_A 181 IDASDLQSYEPKSLKSIQNVSHLILHMKQHILLLEIFVDVTSSVECLELRDTDLDTFHFSELSTGETNSLIKKFTFRNVK 260 (353)
T ss_dssp EEETTCCEECTTTTTTCSEEEEEEEECSCSTTHHHHHHHHTTTEEEEEEESCBCTTCCCC------CCCCCCEEEEESCB
T ss_pred CCCCCcCccCHHHHhccccCCeecCCCCccccchhhhhhhcccccEEECCCCccccccccccccccccchhhcccccccc
Confidence 777777766677777777777777777777644433455677777788887777765444332 34556667777776
Q ss_pred ccC----CCCccccccCccceEeccCCCCCCCCcccccccccccEEEccCCcccccccc
Q 005040 273 FQG----PIPESVGNLISLESLDFSNNNLSGKIPKSLEALSHLKQFNVSHNRLEGEIPV 327 (717)
Q Consensus 273 l~~----~~~~~~~~l~~L~~L~L~~N~~~~~~~~~~~~l~~L~~L~l~~N~l~~~~p~ 327 (717)
+.+ .+|..+..+++|+.|+|++|+++...+..|..+++|+.|+|++|++.+.+|.
T Consensus 261 l~~~~l~~l~~~l~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N~~~~~~~~ 319 (353)
T 2z80_A 261 ITDESLFQVMKLLNQISGLLELEFSRNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPR 319 (353)
T ss_dssp CCHHHHHHHHHHHHTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCBCCCHHH
T ss_pred ccCcchhhhHHHHhcccCCCEEECCCCCCCccCHHHHhcCCCCCEEEeeCCCccCcCCC
Confidence 654 4677788999999999999999954444568999999999999999998874
No 296
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.97 E-value=2.8e-31 Score=274.36 Aligned_cols=279 Identities=21% Similarity=0.243 Sum_probs=206.5
Q ss_pred cEEECCCCcceecCCcCCCCCCCCCEEEcccccccCccCCcccccccccccCccCCcEEeccCCCCcccCCcchhccccc
Q 005040 15 IGLDLGLNSFSGHIPNTFGNLRHLSVLSLMMNNLTTESSSADQWSFLSSLTNCRNLANLALASNPLGGILPPLIGNFSAS 94 (717)
Q Consensus 15 ~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~l~~~ 94 (717)
+.++++++.++ .+|..+. ++|++|+|++|+|+.++... |.++++|++|+|++|+++...
T Consensus 10 ~~l~c~~~~l~-~ip~~~~--~~l~~L~L~~n~l~~i~~~~--------~~~l~~L~~L~L~~n~l~~~~---------- 68 (306)
T 2z66_A 10 TEIRCNSKGLT-SVPTGIP--SSATRLELESNKLQSLPHGV--------FDKLTQLTKLSLSSNGLSFKG---------- 68 (306)
T ss_dssp TEEECCSSCCS-SCCSCCC--TTCCEEECCSSCCCCCCTTT--------TTTCTTCSEEECCSSCCCEEE----------
T ss_pred CEEEcCCCCcc-cCCCCCC--CCCCEEECCCCccCccCHhH--------hhccccCCEEECCCCccCccc----------
Confidence 56788888887 4555443 57888888888888776543 677788888888888776321
Q ss_pred cceeeecCCcceecCCccccCCCCCcEEEccCCCCcccCCccccccCCCCEEeccCCcccccCC-ccccCCCCCCEEecc
Q 005040 95 LQNIYAFECKLGGSIPKEIGNLRGLIVLSLGFNDLNGTIPTSIGTLQQLQGFYVPENNLQGYVP-HDLCHLERLNILNLS 173 (717)
Q Consensus 95 L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~i~~~~~-~~~~~l~~L~~L~L~ 173 (717)
..+..+..+++|++|+|++|.++ .+|..+..+++|++|++++|.+++..+ ..+..+++|++|+++
T Consensus 69 -------------~~~~~~~~~~~L~~L~Ls~n~i~-~l~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~ 134 (306)
T 2z66_A 69 -------------CCSQSDFGTTSLKYLDLSFNGVI-TMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDIS 134 (306)
T ss_dssp -------------EEEHHHHSCSCCCEEECCSCSEE-EEEEEEETCTTCCEEECTTSEEESSTTTTTTTTCTTCCEEECT
T ss_pred -------------CcccccccccccCEEECCCCccc-cChhhcCCCCCCCEEECCCCcccccccchhhhhccCCCEEECC
Confidence 11234455677777777777776 355567777777777777777776554 567777888888888
Q ss_pred CCcCcccCCccccCCCCCCeEEecCccccC-CCChhhhcccCCCeEEccCCcCcccCCccccCCCCCCeEEccCCCCCCC
Q 005040 174 GNKLSGAIPQCLASLTSLRSLYLQSNKLSS-SLPSSLWSLEYILRINLSSNSLKGTLPSNIQKLNVLIDLDLSRNQLSSD 252 (717)
Q Consensus 174 ~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~-~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~ 252 (717)
+|.+++..+..|..+++|++|+|++|.+++ ..|..+..+++|++|++++|.+++..|..|..+++|+.|++++|.+++.
T Consensus 135 ~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~ 214 (306)
T 2z66_A 135 HTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSL 214 (306)
T ss_dssp TSCCEECSTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCSBC
T ss_pred CCcCCccchhhcccCcCCCEEECCCCccccccchhHHhhCcCCCEEECCCCCcCCcCHHHhcCCCCCCEEECCCCccCcc
Confidence 888877777777788888888888888875 4677788888888888888888877778888888888888888888877
Q ss_pred CcccccCCcccccccccCccccCCCCccccccC-ccceEeccCCCCCCCCc--ccccccccccEEEccCCccccccccc
Q 005040 253 IPSTIGTLKNLETLSLAGNQFQGPIPESVGNLI-SLESLDFSNNNLSGKIP--KSLEALSHLKQFNVSHNRLEGEIPVK 328 (717)
Q Consensus 253 ~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~-~L~~L~L~~N~~~~~~~--~~~~~l~~L~~L~l~~N~l~~~~p~~ 328 (717)
.+..+..+++|++|++++|++.+..+..+..++ +|++|+|++|++.+..+ .....+...+.+.+..+.+.+..|..
T Consensus 215 ~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~L~~L~L~~N~~~~~c~~~~~~~~l~~~~~~~~~~~~~~C~~p~~ 293 (306)
T 2z66_A 215 DTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFACTCEHQSFLQWIKDQRQLLVEVERMECATPSD 293 (306)
T ss_dssp CSGGGTTCTTCCEEECTTSCCCBCSSSSCCCCCTTCCEEECTTCCEECSGGGHHHHHHHHHTGGGBSCGGGCBEEESGG
T ss_pred ChhhccCcccCCEeECCCCCCcccCHHHHHhhhccCCEEEccCCCeecccChHHHHHHHHhhhhhhccccccccCCchh
Confidence 676788888888888888888888888888874 88889998888875422 22334555666677777887777653
No 297
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=99.97 E-value=1.1e-30 Score=283.76 Aligned_cols=240 Identities=25% Similarity=0.327 Sum_probs=123.8
Q ss_pred CCCCCccccCCCCCcEEECCCCcceecCCcCCCCCCCC-------------CEEEcccccccCccCCcccccccccccCc
Q 005040 1 MGTIPNSITNATKLIGLDLGLNSFSGHIPNTFGNLRHL-------------SVLSLMMNNLTTESSSADQWSFLSSLTNC 67 (717)
Q Consensus 1 ~~~iP~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L-------------~~L~L~~n~l~~~~~~~~~~~~~~~l~~l 67 (717)
+|+||++|+++++|++|++++|.+++..|..++++++| ++|++++|.+++++.. .
T Consensus 23 l~~iP~~i~~L~~L~~L~l~~n~~~~~~p~~~~~l~~L~~l~l~~c~~~~l~~L~l~~~~l~~lp~~------------~ 90 (454)
T 1jl5_A 23 LTEMPVEAENVKSKTEYYNAWSEWERNAPPGNGEQREMAVSRLRDCLDRQAHELELNNLGLSSLPEL------------P 90 (454)
T ss_dssp -----------CCHHHHHHHHHHHHHTSCTTSCCCHHHHHHHHHHHHHHTCSEEECTTSCCSCCCSC------------C
T ss_pred hhhCChhHhcccchhhhhccCCcccccCCcccccchhcchhhhhhhhccCCCEEEecCCccccCCCC------------c
Confidence 47899999999999999999999998999999888764 8888888888876531 1
Q ss_pred cCCcEEeccCCCCcccCCcch----------------hccccccceeeecCCcceecCCccccCCCCCcEEEccCCCCcc
Q 005040 68 RNLANLALASNPLGGILPPLI----------------GNFSASLQNIYAFECKLGGSIPKEIGNLRGLIVLSLGFNDLNG 131 (717)
Q Consensus 68 ~~L~~L~L~~N~l~~~~~~~~----------------~~l~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~ 131 (717)
++|++|++++|.+++ +|..+ ..++++|++|++++|++.+ +| .|+++++|++|++++|++++
T Consensus 91 ~~L~~L~l~~n~l~~-lp~~~~~L~~L~l~~n~l~~l~~~~~~L~~L~L~~n~l~~-lp-~~~~l~~L~~L~l~~N~l~~ 167 (454)
T 1jl5_A 91 PHLESLVASCNSLTE-LPELPQSLKSLLVDNNNLKALSDLPPLLEYLGVSNNQLEK-LP-ELQNSSFLKIIDVDNNSLKK 167 (454)
T ss_dssp TTCSEEECCSSCCSS-CCCCCTTCCEEECCSSCCSCCCSCCTTCCEEECCSSCCSS-CC-CCTTCTTCCEEECCSSCCSC
T ss_pred CCCCEEEccCCcCCc-cccccCCCcEEECCCCccCcccCCCCCCCEEECcCCCCCC-Cc-ccCCCCCCCEEECCCCcCcc
Confidence 345555555555553 23211 0111345555555555553 34 35555555555555555553
Q ss_pred cCCccccccCCCCEEeccCCcccccCCccccCCCCCCEEeccCCcCcccCCccccCCCCCCeEEecCccccCCCChhhhc
Q 005040 132 TIPTSIGTLQQLQGFYVPENNLQGYVPHDLCHLERLNILNLSGNKLSGAIPQCLASLTSLRSLYLQSNKLSSSLPSSLWS 211 (717)
Q Consensus 132 ~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~ 211 (717)
+|..+ .+|++|++++|++++. | .+.++++|++|++++|++++ +|... ++|++|++++|.++ .+|. +..
T Consensus 168 -lp~~~---~~L~~L~L~~n~l~~l-~-~~~~l~~L~~L~l~~N~l~~-l~~~~---~~L~~L~l~~n~l~-~lp~-~~~ 235 (454)
T 1jl5_A 168 -LPDLP---PSLEFIAAGNNQLEEL-P-ELQNLPFLTAIYADNNSLKK-LPDLP---LSLESIVAGNNILE-ELPE-LQN 235 (454)
T ss_dssp -CCCCC---TTCCEEECCSSCCSSC-C-CCTTCTTCCEEECCSSCCSS-CCCCC---TTCCEEECCSSCCS-SCCC-CTT
T ss_pred -cCCCc---ccccEEECcCCcCCcC-c-cccCCCCCCEEECCCCcCCc-CCCCc---CcccEEECcCCcCC-cccc-cCC
Confidence 23221 3555555555555542 2 35555555555555555553 22211 35555555555555 3332 555
Q ss_pred ccCCCeEEccCCcCcccCCccccCCCCCCeEEccCCCCCCCCcccccCCcccccccccCccccC
Q 005040 212 LEYILRINLSSNSLKGTLPSNIQKLNVLIDLDLSRNQLSSDIPSTIGTLKNLETLSLAGNQFQG 275 (717)
Q Consensus 212 l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~ 275 (717)
+++|++|++++|++++ +|.. +++|+.|++++|.+++ +|.. +++|++|++++|++++
T Consensus 236 l~~L~~L~l~~N~l~~-l~~~---~~~L~~L~l~~N~l~~-l~~~---~~~L~~L~ls~N~l~~ 291 (454)
T 1jl5_A 236 LPFLTTIYADNNLLKT-LPDL---PPSLEALNVRDNYLTD-LPEL---PQSLTFLDVSENIFSG 291 (454)
T ss_dssp CTTCCEEECCSSCCSS-CCSC---CTTCCEEECCSSCCSC-CCCC---CTTCCEEECCSSCCSE
T ss_pred CCCCCEEECCCCcCCc-cccc---ccccCEEECCCCcccc-cCcc---cCcCCEEECcCCccCc
Confidence 5555555555555553 2221 2445555555555553 2221 2445555555555543
No 298
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.97 E-value=3.5e-31 Score=273.62 Aligned_cols=274 Identities=21% Similarity=0.199 Sum_probs=226.3
Q ss_pred cEEeccCCCCcccCCcchhccccccceeeecCCcceecCCccccCCCCCcEEEccCCCCccc--CCccccccCCCCEEec
Q 005040 71 ANLALASNPLGGILPPLIGNFSASLQNIYAFECKLGGSIPKEIGNLRGLIVLSLGFNDLNGT--IPTSIGTLQQLQGFYV 148 (717)
Q Consensus 71 ~~L~L~~N~l~~~~~~~~~~l~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~--~~~~~~~l~~L~~L~l 148 (717)
+.++++++.++ .+|..+ +++|++|++++|++....+..|.++++|++|+|++|.++.. .+..+..+++|++|+|
T Consensus 10 ~~l~c~~~~l~-~ip~~~---~~~l~~L~L~~n~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~L 85 (306)
T 2z66_A 10 TEIRCNSKGLT-SVPTGI---PSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDL 85 (306)
T ss_dssp TEEECCSSCCS-SCCSCC---CTTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCEEEEEEHHHHSCSCCCEEEC
T ss_pred CEEEcCCCCcc-cCCCCC---CCCCCEEECCCCccCccCHhHhhccccCCEEECCCCccCcccCcccccccccccCEEEC
Confidence 34555555555 233322 24566666666666644455688999999999999999843 2667888999999999
Q ss_pred cCCcccccCCccccCCCCCCEEeccCCcCcccCC-ccccCCCCCCeEEecCccccCCCChhhhcccCCCeEEccCCcCcc
Q 005040 149 PENNLQGYVPHDLCHLERLNILNLSGNKLSGAIP-QCLASLTSLRSLYLQSNKLSSSLPSSLWSLEYILRINLSSNSLKG 227 (717)
Q Consensus 149 ~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~-~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~ 227 (717)
++|.+.. .+..+..+++|++|++++|++++..+ ..+..+++|++|++++|.+++..+..+..+++|++|++++|.+++
T Consensus 86 s~n~i~~-l~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~ 164 (306)
T 2z66_A 86 SFNGVIT-MSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQE 164 (306)
T ss_dssp CSCSEEE-EEEEEETCTTCCEEECTTSEEESSTTTTTTTTCTTCCEEECTTSCCEECSTTTTTTCTTCCEEECTTCEEGG
T ss_pred CCCcccc-ChhhcCCCCCCCEEECCCCcccccccchhhhhccCCCEEECCCCcCCccchhhcccCcCCCEEECCCCcccc
Confidence 9999995 56679999999999999999997655 579999999999999999998889999999999999999999986
Q ss_pred -cCCccccCCCCCCeEEccCCCCCCCCcccccCCcccccccccCccccCCCCccccccCccceEeccCCCCCCCCccccc
Q 005040 228 -TLPSNIQKLNVLIDLDLSRNQLSSDIPSTIGTLKNLETLSLAGNQFQGPIPESVGNLISLESLDFSNNNLSGKIPKSLE 306 (717)
Q Consensus 228 -~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~~~~~~~~~ 306 (717)
..|..+..+++|+.|++++|.+++..|..+..+++|++|++++|++++..+..+..+++|+.|+|++|++.+..|..+.
T Consensus 165 ~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~ 244 (306)
T 2z66_A 165 NFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQ 244 (306)
T ss_dssp GEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCSBCCSGGGTTCTTCCEEECTTSCCCBCSSSSCC
T ss_pred ccchhHHhhCcCCCEEECCCCCcCCcCHHHhcCCCCCCEEECCCCccCccChhhccCcccCCEeECCCCCCcccCHHHHH
Confidence 6889999999999999999999998899999999999999999999988788899999999999999999999999999
Q ss_pred ccc-cccEEEccCCcccccccccccccc---cccccccCCccccCCC
Q 005040 307 ALS-HLKQFNVSHNRLEGEIPVKGSFKD---FSAQSYFGNYALCGPP 349 (717)
Q Consensus 307 ~l~-~L~~L~l~~N~l~~~~p~~~~~~~---~~~~~~~~n~~~c~~~ 349 (717)
.++ +|+.|+|++|++++.++......+ ........+...|..|
T Consensus 245 ~~~~~L~~L~L~~N~~~~~c~~~~~~~~l~~~~~~~~~~~~~~C~~p 291 (306)
T 2z66_A 245 HFPSSLAFLNLTQNDFACTCEHQSFLQWIKDQRQLLVEVERMECATP 291 (306)
T ss_dssp CCCTTCCEEECTTCCEECSGGGHHHHHHHHHTGGGBSCGGGCBEEES
T ss_pred hhhccCCEEEccCCCeecccChHHHHHHHHhhhhhhccccccccCCc
Confidence 985 999999999999998765322222 2233334455556543
No 299
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.97 E-value=2.3e-30 Score=281.61 Aligned_cols=253 Identities=23% Similarity=0.269 Sum_probs=203.6
Q ss_pred CCcEEeccCCCCcccCCcchhccccccceeeecCCcceecCCccccCCCCCcEEEccCCCCcccCCccccccCCCCEEec
Q 005040 69 NLANLALASNPLGGILPPLIGNFSASLQNIYAFECKLGGSIPKEIGNLRGLIVLSLGFNDLNGTIPTSIGTLQQLQGFYV 148 (717)
Q Consensus 69 ~L~~L~L~~N~l~~~~~~~~~~l~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l 148 (717)
....++.+++.++ .+|..+. ++++.|+|++|++....+..|.++++|++|+|++|.|+.+.+..|.++++|++|+|
T Consensus 44 ~~~~v~c~~~~l~-~iP~~~~---~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L 119 (440)
T 3zyj_A 44 QFSKVICVRKNLR-EVPDGIS---TNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLEL 119 (440)
T ss_dssp TSCEEECCSCCCS-SCCSCCC---TTCSEEECCSCCCCEECTTTTSSCSSCCEEECCSSCCCEECGGGGTTCSSCCEEEC
T ss_pred CCCEEEeCCCCcC-cCCCCCC---CCCcEEEccCCcCCeeCHHHhhCCCCCCEEECCCCcCCccChhhccCCccCCEEEC
Confidence 3456667777666 4444332 45777777777777777778888888888888888888777788888888888888
Q ss_pred cCCcccccCCccccCCCCCCEEeccCCcCcccCCccccCCCCCCeEEecC-ccccCCCChhhhcccCCCeEEccCCcCcc
Q 005040 149 PENNLQGYVPHDLCHLERLNILNLSGNKLSGAIPQCLASLTSLRSLYLQS-NKLSSSLPSSLWSLEYILRINLSSNSLKG 227 (717)
Q Consensus 149 ~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~-N~l~~~~~~~~~~l~~L~~L~l~~N~l~~ 227 (717)
++|+|+.+.+..|..+++|++|+|++|.|+...+..|..+++|++|+|++ |.+....+..|.++++|++|+|++|.++.
T Consensus 120 ~~n~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~ 199 (440)
T 3zyj_A 120 FDNRLTTIPNGAFVYLSKLKELWLRNNPIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLRE 199 (440)
T ss_dssp CSSCCSSCCTTTSCSCSSCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCSSCCEEECTTSCCSS
T ss_pred CCCcCCeeCHhHhhccccCceeeCCCCcccccCHHHhhhCcccCEeCCCCCCCcceeCcchhhcccccCeecCCCCcCcc
Confidence 88888877777788888888888888888877777788888888888888 44554445578888888888888888883
Q ss_pred cCCccccCCCCCCeEEccCCCCCCCCcccccCCcccccccccCccccCCCCccccccCccceEeccCCCCCCCCcccccc
Q 005040 228 TLPSNIQKLNVLIDLDLSRNQLSSDIPSTIGTLKNLETLSLAGNQFQGPIPESVGNLISLESLDFSNNNLSGKIPKSLEA 307 (717)
Q Consensus 228 ~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~~~~~~~~~~ 307 (717)
+| .+..+++|+.|+|++|.+++..|..|..+++|+.|+|++|++++..+..|.++++|+.|+|++|++++..+..|..
T Consensus 200 -~~-~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~ 277 (440)
T 3zyj_A 200 -IP-NLTPLIKLDELDLSGNHLSAIRPGSFQGLMHLQKLWMIQSQIQVIERNAFDNLQSLVEINLAHNNLTLLPHDLFTP 277 (440)
T ss_dssp -CC-CCTTCSSCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTSSTTCTTCCEEECTTSCCCCCCTTTTSS
T ss_pred -cc-ccCCCcccCEEECCCCccCccChhhhccCccCCEEECCCCceeEEChhhhcCCCCCCEEECCCCCCCccChhHhcc
Confidence 44 4788888999999999888887888888899999999999998888888888899999999999998877788888
Q ss_pred cccccEEEccCCcccccccc
Q 005040 308 LSHLKQFNVSHNRLEGEIPV 327 (717)
Q Consensus 308 l~~L~~L~l~~N~l~~~~p~ 327 (717)
+++|+.|+|++|++.+.+..
T Consensus 278 l~~L~~L~L~~Np~~CdC~l 297 (440)
T 3zyj_A 278 LHHLERIHLHHNPWNCNCDI 297 (440)
T ss_dssp CTTCCEEECCSSCEECSSTT
T ss_pred ccCCCEEEcCCCCccCCCCc
Confidence 89999999999998877654
No 300
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.97 E-value=2.3e-30 Score=282.61 Aligned_cols=253 Identities=21% Similarity=0.230 Sum_probs=212.5
Q ss_pred CCcEEeccCCCCcccCCcchhccccccceeeecCCcceecCCccccCCCCCcEEEccCCCCcccCCccccccCCCCEEec
Q 005040 69 NLANLALASNPLGGILPPLIGNFSASLQNIYAFECKLGGSIPKEIGNLRGLIVLSLGFNDLNGTIPTSIGTLQQLQGFYV 148 (717)
Q Consensus 69 ~L~~L~L~~N~l~~~~~~~~~~l~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l 148 (717)
....++.+++.++ .+|..+ ++++++|+|++|++.+..+..|.++++|++|+|++|.|+++.+..|.++++|++|+|
T Consensus 55 ~~~~v~c~~~~l~-~iP~~~---~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L 130 (452)
T 3zyi_A 55 QFSKVVCTRRGLS-EVPQGI---PSNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLEL 130 (452)
T ss_dssp SSCEEECCSSCCS-SCCSCC---CTTCSEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEEC
T ss_pred CCcEEEECCCCcC-ccCCCC---CCCccEEECcCCcCceECHHHcCCCCCCCEEECCCCccCCcChhhccCcccCCEEEC
Confidence 4567777777777 445433 356888888888888888888888889999999999888888888888899999999
Q ss_pred cCCcccccCCccccCCCCCCEEeccCCcCcccCCccccCCCCCCeEEecC-ccccCCCChhhhcccCCCeEEccCCcCcc
Q 005040 149 PENNLQGYVPHDLCHLERLNILNLSGNKLSGAIPQCLASLTSLRSLYLQS-NKLSSSLPSSLWSLEYILRINLSSNSLKG 227 (717)
Q Consensus 149 ~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~-N~l~~~~~~~~~~l~~L~~L~l~~N~l~~ 227 (717)
++|+++...+..|.++++|++|+|++|+|+...+..|.++++|+.|+|++ |.+....+..|.++++|++|+|++|++++
T Consensus 131 ~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~ 210 (452)
T 3zyi_A 131 FDNWLTVIPSGAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIKD 210 (452)
T ss_dssp CSSCCSBCCTTTSSSCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCTTCCEEECTTSCCSS
T ss_pred CCCcCCccChhhhcccCCCCEEECCCCCcceeCHhHHhcCCcccEEeCCCCCCccccChhhccCCCCCCEEECCCCcccc
Confidence 99998887777788888999999999998877777888889999999988 45554555578888999999999999885
Q ss_pred cCCccccCCCCCCeEEccCCCCCCCCcccccCCcccccccccCccccCCCCccccccCccceEeccCCCCCCCCcccccc
Q 005040 228 TLPSNIQKLNVLIDLDLSRNQLSSDIPSTIGTLKNLETLSLAGNQFQGPIPESVGNLISLESLDFSNNNLSGKIPKSLEA 307 (717)
Q Consensus 228 ~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~~~~~~~~~~ 307 (717)
. | .+..+++|+.|+|++|.+++..|..|..+++|+.|+|++|++++..+..|.++++|+.|+|++|++++..+..|..
T Consensus 211 ~-~-~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~ 288 (452)
T 3zyi_A 211 M-P-NLTPLVGLEELEMSGNHFPEIRPGSFHGLSSLKKLWVMNSQVSLIERNAFDGLASLVELNLAHNNLSSLPHDLFTP 288 (452)
T ss_dssp C-C-CCTTCTTCCEEECTTSCCSEECGGGGTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTSSTT
T ss_pred c-c-cccccccccEEECcCCcCcccCcccccCccCCCEEEeCCCcCceECHHHhcCCCCCCEEECCCCcCCccChHHhcc
Confidence 4 3 5888889999999999999888888999999999999999999888888999999999999999999877888888
Q ss_pred cccccEEEccCCcccccccc
Q 005040 308 LSHLKQFNVSHNRLEGEIPV 327 (717)
Q Consensus 308 l~~L~~L~l~~N~l~~~~p~ 327 (717)
+++|+.|+|++|++.+.+..
T Consensus 289 l~~L~~L~L~~Np~~CdC~~ 308 (452)
T 3zyi_A 289 LRYLVELHLHHNPWNCDCDI 308 (452)
T ss_dssp CTTCCEEECCSSCEECSTTT
T ss_pred ccCCCEEEccCCCcCCCCCc
Confidence 99999999999999887664
No 301
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.97 E-value=2.2e-31 Score=280.94 Aligned_cols=281 Identities=19% Similarity=0.180 Sum_probs=234.5
Q ss_pred CCCCCcEEECCCCcceecCCcCCCCCCCCCEEEcccccccCccCCcccccccccccCccCCcEEeccCCCCcccCCcchh
Q 005040 10 NATKLIGLDLGLNSFSGHIPNTFGNLRHLSVLSLMMNNLTTESSSADQWSFLSSLTNCRNLANLALASNPLGGILPPLIG 89 (717)
Q Consensus 10 ~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~ 89 (717)
.+......+++++.++ .+|..+. ++|++|+|++|+|+.++... |.++++|++|+|++|++++..+..|.
T Consensus 29 ~C~~~~~c~~~~~~l~-~iP~~~~--~~L~~L~l~~n~i~~~~~~~--------~~~l~~L~~L~L~~n~l~~~~~~~~~ 97 (353)
T 2z80_A 29 SCDRNGICKGSSGSLN-SIPSGLT--EAVKSLDLSNNRITYISNSD--------LQRCVNLQALVLTSNGINTIEEDSFS 97 (353)
T ss_dssp EECTTSEEECCSTTCS-SCCTTCC--TTCCEEECTTSCCCEECTTT--------TTTCTTCCEEECTTSCCCEECTTTTT
T ss_pred CCCCCeEeeCCCCCcc-ccccccc--ccCcEEECCCCcCcccCHHH--------hccCCCCCEEECCCCccCccCHhhcC
Confidence 4455566899999998 4666554 48999999999999877544 88899999999999999988888888
Q ss_pred ccccccceeeecCCcceecCCccccCCCCCcEEEccCCCCcccCC-ccccccCCCCEEeccCC-cccccCCccccCCCCC
Q 005040 90 NFSASLQNIYAFECKLGGSIPKEIGNLRGLIVLSLGFNDLNGTIP-TSIGTLQQLQGFYVPEN-NLQGYVPHDLCHLERL 167 (717)
Q Consensus 90 ~l~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~-~~~~~l~~L~~L~l~~n-~i~~~~~~~~~~l~~L 167 (717)
.+ ++|++|++++|++++..+..|.++++|++|+|++|+++...+ ..|.++++|++|++++| .++...+..|.++++|
T Consensus 98 ~l-~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L 176 (353)
T 2z80_A 98 SL-GSLEHLDLSYNYLSNLSSSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFL 176 (353)
T ss_dssp TC-TTCCEEECCSSCCSSCCHHHHTTCTTCSEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEE
T ss_pred CC-CCCCEEECCCCcCCcCCHhHhCCCccCCEEECCCCCCcccCchhhhccCCCCcEEECCCCccccccCHHHccCCCCC
Confidence 87 679999999999986656668999999999999999996554 57899999999999999 5787778889999999
Q ss_pred CEEeccCCcCcccCCccccCCCCCCeEEecCccccCCCChhhhcccCCCeEEccCCcCcccCCccc---cCCCCCCeEEc
Q 005040 168 NILNLSGNKLSGAIPQCLASLTSLRSLYLQSNKLSSSLPSSLWSLEYILRINLSSNSLKGTLPSNI---QKLNVLIDLDL 244 (717)
Q Consensus 168 ~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~---~~l~~L~~L~l 244 (717)
++|++++|++++..|..|..+++|++|++++|+++......+..+++|+.|++++|.+++..+..+ .....++.+++
T Consensus 177 ~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~~~~~~l~~l~L 256 (353)
T 2z80_A 177 EELEIDASDLQSYEPKSLKSIQNVSHLILHMKQHILLLEIFVDVTSSVECLELRDTDLDTFHFSELSTGETNSLIKKFTF 256 (353)
T ss_dssp EEEEEEETTCCEECTTTTTTCSEEEEEEEECSCSTTHHHHHHHHTTTEEEEEEESCBCTTCCCC------CCCCCCEEEE
T ss_pred CEEECCCCCcCccCHHHHhccccCCeecCCCCccccchhhhhhhcccccEEECCCCccccccccccccccccchhhcccc
Confidence 999999999998889999999999999999999985444455678999999999999997655544 34667889999
Q ss_pred cCCCCCC----CCcccccCCcccccccccCccccCCCCccccccCccceEeccCCCCCCCCc
Q 005040 245 SRNQLSS----DIPSTIGTLKNLETLSLAGNQFQGPIPESVGNLISLESLDFSNNNLSGKIP 302 (717)
Q Consensus 245 ~~N~l~~----~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~~~~~ 302 (717)
++|.+++ .+|..+..+++|++|++++|+++...+..|.++++|++|+|++|++.+..|
T Consensus 257 ~~~~l~~~~l~~l~~~l~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N~~~~~~~ 318 (353)
T 2z80_A 257 RNVKITDESLFQVMKLLNQISGLLELEFSRNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP 318 (353)
T ss_dssp ESCBCCHHHHHHHHHHHHTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCBCCCHH
T ss_pred ccccccCcchhhhHHHHhcccCCCEEECCCCCCCccCHHHHhcCCCCCEEEeeCCCccCcCC
Confidence 9999886 356778899999999999999995444446899999999999999986443
No 302
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.97 E-value=1.9e-30 Score=265.23 Aligned_cols=216 Identities=23% Similarity=0.272 Sum_probs=98.9
Q ss_pred ccccCCCCCcEEEccCCCCcccCCccccccCCCCEEeccCCc-ccccCCccccCCCCCCEEeccCCcCcccCCccccCCC
Q 005040 111 KEIGNLRGLIVLSLGFNDLNGTIPTSIGTLQQLQGFYVPENN-LQGYVPHDLCHLERLNILNLSGNKLSGAIPQCLASLT 189 (717)
Q Consensus 111 ~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~-i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~ 189 (717)
..|.++++|++|+|++|.+++..+..|.++++|++|++++|. ++...+..|..+++|++|+|++|.+++..+..|.+++
T Consensus 50 ~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~ 129 (285)
T 1ozn_A 50 ASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLA 129 (285)
T ss_dssp TTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSCTTCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCT
T ss_pred HHcccCCCCCEEECCCCccceeCHhhcCCccCCCEEeCCCCCCccccCHHHhcCCcCCCEEECCCCcCCEECHhHhhCCc
Confidence 334444444444444444444334444444444444444443 4433344444444444444444444444344444444
Q ss_pred CCCeEEecCccccCCCChhhhcccCCCeEEccCCcCcccCCccccCCCCCCeEEccCCCCCCCCcccccCCccccccccc
Q 005040 190 SLRSLYLQSNKLSSSLPSSLWSLEYILRINLSSNSLKGTLPSNIQKLNVLIDLDLSRNQLSSDIPSTIGTLKNLETLSLA 269 (717)
Q Consensus 190 ~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~ 269 (717)
+|++|+|++|++++..+..|..+++|++|+|++|++++..+..|..+++|+.|++++|.+++..|..|..+++|+.|+++
T Consensus 130 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~ 209 (285)
T 1ozn_A 130 ALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLF 209 (285)
T ss_dssp TCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECC
T ss_pred CCCEEECCCCcccccCHhHhccCCCccEEECCCCcccccCHHHhcCccccCEEECCCCcccccCHhHccCcccccEeeCC
Confidence 44444444444444333344444444555555544444333344445555555555555554444445555555555555
Q ss_pred CccccCCCCccccccCccceEeccCCCCCCCCcccccccccccEEEccCCcccccccc
Q 005040 270 GNQFQGPIPESVGNLISLESLDFSNNNLSGKIPKSLEALSHLKQFNVSHNRLEGEIPV 327 (717)
Q Consensus 270 ~N~l~~~~~~~~~~l~~L~~L~L~~N~~~~~~~~~~~~l~~L~~L~l~~N~l~~~~p~ 327 (717)
+|++++..+..+..+++|+.|+|++|++....+. ...+..++.+....+.+.+..|.
T Consensus 210 ~n~l~~~~~~~~~~l~~L~~L~l~~N~~~c~~~~-~~~~~~l~~~~~~~~~~~c~~p~ 266 (285)
T 1ozn_A 210 ANNLSALPTEALAPLRALQYLRLNDNPWVCDCRA-RPLWAWLQKFRGSSSEVPCSLPQ 266 (285)
T ss_dssp SSCCSCCCHHHHTTCTTCCEEECCSSCEECSGGG-HHHHHHHHHCCSEECCCBEEESG
T ss_pred CCcCCcCCHHHcccCcccCEEeccCCCccCCCCc-HHHHHHHHhcccccCccccCCch
Confidence 5555544444455555555555555555432111 11112233444455555555544
No 303
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.97 E-value=2e-30 Score=264.93 Aligned_cols=251 Identities=21% Similarity=0.200 Sum_probs=220.4
Q ss_pred ceeeecCCcceecCCccccCCCCCcEEEccCCCCcccCCccccccCCCCEEeccCCcccccCCccccCCCCCCEEeccCC
Q 005040 96 QNIYAFECKLGGSIPKEIGNLRGLIVLSLGFNDLNGTIPTSIGTLQQLQGFYVPENNLQGYVPHDLCHLERLNILNLSGN 175 (717)
Q Consensus 96 ~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n 175 (717)
..++.+++++. .+|..+ .++|++|+|++|.++...+..|..+++|++|+|++|.+++..+..|.++++|++|+|++|
T Consensus 14 ~~~~c~~~~l~-~ip~~~--~~~l~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n 90 (285)
T 1ozn_A 14 VTTSCPQQGLQ-AVPVGI--PAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDN 90 (285)
T ss_dssp CEEECCSSCCS-SCCTTC--CTTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSC
T ss_pred eEEEcCcCCcc-cCCcCC--CCCceEEEeeCCcCCccCHHHcccCCCCCEEECCCCccceeCHhhcCCccCCCEEeCCCC
Confidence 34455555554 334433 368999999999999888889999999999999999999998999999999999999999
Q ss_pred c-CcccCCccccCCCCCCeEEecCccccCCCChhhhcccCCCeEEccCCcCcccCCccccCCCCCCeEEccCCCCCCCCc
Q 005040 176 K-LSGAIPQCLASLTSLRSLYLQSNKLSSSLPSSLWSLEYILRINLSSNSLKGTLPSNIQKLNVLIDLDLSRNQLSSDIP 254 (717)
Q Consensus 176 ~-l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~ 254 (717)
. ++...+..|..+++|++|+|++|.+++..+..|..+++|++|++++|.+++..+..|..+++|+.|++++|.+++..+
T Consensus 91 ~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~ 170 (285)
T 1ozn_A 91 AQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPE 170 (285)
T ss_dssp TTCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCEECT
T ss_pred CCccccCHHHhcCCcCCCEEECCCCcCCEECHhHhhCCcCCCEEECCCCcccccCHhHhccCCCccEEECCCCcccccCH
Confidence 7 887778899999999999999999998888999999999999999999998777889999999999999999998777
Q ss_pred ccccCCcccccccccCccccCCCCccccccCccceEeccCCCCCCCCcccccccccccEEEccCCccccccccccccccc
Q 005040 255 STIGTLKNLETLSLAGNQFQGPIPESVGNLISLESLDFSNNNLSGKIPKSLEALSHLKQFNVSHNRLEGEIPVKGSFKDF 334 (717)
Q Consensus 255 ~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~~~~~~~~~~l~~L~~L~l~~N~l~~~~p~~~~~~~~ 334 (717)
..|..+++|++|++++|++.+..|..+.++++|+.|+|++|++++..+..+..+++|+.|++++|++.+.++....+.++
T Consensus 171 ~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~c~~~~~~~~~~l 250 (285)
T 1ozn_A 171 RAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPWVCDCRARPLWAWL 250 (285)
T ss_dssp TTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCHHHHTTCTTCCEEECCSSCEECSGGGHHHHHHH
T ss_pred HHhcCccccCEEECCCCcccccCHhHccCcccccEeeCCCCcCCcCCHHHcccCcccCEEeccCCCccCCCCcHHHHHHH
Confidence 78999999999999999999888999999999999999999999888888999999999999999999988876555555
Q ss_pred ccccccCCccccCCC
Q 005040 335 SAQSYFGNYALCGPP 349 (717)
Q Consensus 335 ~~~~~~~n~~~c~~~ 349 (717)
.......+...|..|
T Consensus 251 ~~~~~~~~~~~c~~p 265 (285)
T 1ozn_A 251 QKFRGSSSEVPCSLP 265 (285)
T ss_dssp HHCCSEECCCBEEES
T ss_pred HhcccccCccccCCc
Confidence 555555555556533
No 304
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.97 E-value=1.5e-29 Score=275.27 Aligned_cols=249 Identities=20% Similarity=0.196 Sum_probs=201.7
Q ss_pred CCCEEEcccccccCccCCcccccccccccCccCCcEEeccCCCCcccCCcchhccccccceeeecCCcceecCCccccCC
Q 005040 37 HLSVLSLMMNNLTTESSSADQWSFLSSLTNCRNLANLALASNPLGGILPPLIGNFSASLQNIYAFECKLGGSIPKEIGNL 116 (717)
Q Consensus 37 ~L~~L~L~~n~l~~~~~~~~~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~l~~~L~~L~l~~n~l~~~~~~~~~~l 116 (717)
..+.++.+++.++.+|... .++++.|+|++|+++...+..|..+ ++|++|+|++|++....+..|.++
T Consensus 44 ~~~~v~c~~~~l~~iP~~~-----------~~~l~~L~L~~n~i~~~~~~~~~~l-~~L~~L~Ls~n~i~~i~~~~~~~l 111 (440)
T 3zyj_A 44 QFSKVICVRKNLREVPDGI-----------STNTRLLNLHENQIQIIKVNSFKHL-RHLEILQLSRNHIRTIEIGAFNGL 111 (440)
T ss_dssp TSCEEECCSCCCSSCCSCC-----------CTTCSEEECCSCCCCEECTTTTSSC-SSCCEEECCSSCCCEECGGGGTTC
T ss_pred CCCEEEeCCCCcCcCCCCC-----------CCCCcEEEccCCcCCeeCHHHhhCC-CCCCEEECCCCcCCccChhhccCC
Confidence 4567777777777766432 2567777777777777766777766 567777777777777777788888
Q ss_pred CCCcEEEccCCCCcccCCccccccCCCCEEeccCCcccccCCccccCCCCCCEEeccC-CcCcccCCccccCCCCCCeEE
Q 005040 117 RGLIVLSLGFNDLNGTIPTSIGTLQQLQGFYVPENNLQGYVPHDLCHLERLNILNLSG-NKLSGAIPQCLASLTSLRSLY 195 (717)
Q Consensus 117 ~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~-n~l~~~~~~~~~~l~~L~~L~ 195 (717)
++|++|+|++|+++...+..|.++++|++|+|++|.|+...+..|.++++|++|+|++ |.+....+..|.++++|++|+
T Consensus 112 ~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~ 191 (440)
T 3zyj_A 112 ANLNTLELFDNRLTTIPNGAFVYLSKLKELWLRNNPIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLN 191 (440)
T ss_dssp SSCCEEECCSSCCSSCCTTTSCSCSSCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCSSCCEEE
T ss_pred ccCCEEECCCCcCCeeCHhHhhccccCceeeCCCCcccccCHHHhhhCcccCEeCCCCCCCcceeCcchhhcccccCeec
Confidence 8888888888888877777888888888888888888888777888888888888888 455555555788888899999
Q ss_pred ecCccccCCCChhhhcccCCCeEEccCCcCcccCCccccCCCCCCeEEccCCCCCCCCcccccCCcccccccccCccccC
Q 005040 196 LQSNKLSSSLPSSLWSLEYILRINLSSNSLKGTLPSNIQKLNVLIDLDLSRNQLSSDIPSTIGTLKNLETLSLAGNQFQG 275 (717)
Q Consensus 196 L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~ 275 (717)
|++|+++. +| .+..+++|+.|+|++|.|++..|..|.++++|+.|+|++|.+++..+..|..+++|+.|+|++|++++
T Consensus 192 L~~n~l~~-~~-~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~ 269 (440)
T 3zyj_A 192 LAMCNLRE-IP-NLTPLIKLDELDLSGNHLSAIRPGSFQGLMHLQKLWMIQSQIQVIERNAFDNLQSLVEINLAHNNLTL 269 (440)
T ss_dssp CTTSCCSS-CC-CCTTCSSCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTSSTTCTTCCEEECTTSCCCC
T ss_pred CCCCcCcc-cc-ccCCCcccCEEECCCCccCccChhhhccCccCCEEECCCCceeEEChhhhcCCCCCCEEECCCCCCCc
Confidence 99998884 44 47788889999999999988888888899999999999999988888888889999999999999987
Q ss_pred CCCccccccCccceEeccCCCCCC
Q 005040 276 PIPESVGNLISLESLDFSNNNLSG 299 (717)
Q Consensus 276 ~~~~~~~~l~~L~~L~L~~N~~~~ 299 (717)
..+..|..+++|+.|+|++|++..
T Consensus 270 ~~~~~~~~l~~L~~L~L~~Np~~C 293 (440)
T 3zyj_A 270 LPHDLFTPLHHLERIHLHHNPWNC 293 (440)
T ss_dssp CCTTTTSSCTTCCEEECCSSCEEC
T ss_pred cChhHhccccCCCEEEcCCCCccC
Confidence 777788888999999999998863
No 305
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=99.97 E-value=4.5e-29 Score=271.14 Aligned_cols=270 Identities=29% Similarity=0.330 Sum_probs=143.5
Q ss_pred CCCcEEECCCCcceecCCcCCCCCCCCCEEEcccccccCccCCccc----------ccccccccCccCCcEEeccCCCCc
Q 005040 12 TKLIGLDLGLNSFSGHIPNTFGNLRHLSVLSLMMNNLTTESSSADQ----------WSFLSSLTNCRNLANLALASNPLG 81 (717)
Q Consensus 12 ~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~----------~~~~~~l~~l~~L~~L~L~~N~l~ 81 (717)
++|++|+|++|.+++ +|.. +++|++|++++|+++.++..... +..+..|.++++|++|++++|+++
T Consensus 91 ~~L~~L~l~~n~l~~-lp~~---~~~L~~L~l~~n~l~~l~~~~~~L~~L~L~~n~l~~lp~~~~l~~L~~L~l~~N~l~ 166 (454)
T 1jl5_A 91 PHLESLVASCNSLTE-LPEL---PQSLKSLLVDNNNLKALSDLPPLLEYLGVSNNQLEKLPELQNSSFLKIIDVDNNSLK 166 (454)
T ss_dssp TTCSEEECCSSCCSS-CCCC---CTTCCEEECCSSCCSCCCSCCTTCCEEECCSSCCSSCCCCTTCTTCCEEECCSSCCS
T ss_pred CCCCEEEccCCcCCc-cccc---cCCCcEEECCCCccCcccCCCCCCCEEECcCCCCCCCcccCCCCCCCEEECCCCcCc
Confidence 566677777777765 4432 24555555555555543321000 000001455555555555555555
Q ss_pred ccCCcchhccccccceeeecCCcceecCCccccCCCCCcEEEccCCCCcccCCccccccCCCCEEeccCCcccccCCccc
Q 005040 82 GILPPLIGNFSASLQNIYAFECKLGGSIPKEIGNLRGLIVLSLGFNDLNGTIPTSIGTLQQLQGFYVPENNLQGYVPHDL 161 (717)
Q Consensus 82 ~~~~~~~~~l~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~ 161 (717)
+ +|..+ .+|++|++++|++.+ +| .++++++|++|++++|.+++ +|.. .++|++|++++|.++ ..| .+
T Consensus 167 ~-lp~~~----~~L~~L~L~~n~l~~-l~-~~~~l~~L~~L~l~~N~l~~-l~~~---~~~L~~L~l~~n~l~-~lp-~~ 233 (454)
T 1jl5_A 167 K-LPDLP----PSLEFIAAGNNQLEE-LP-ELQNLPFLTAIYADNNSLKK-LPDL---PLSLESIVAGNNILE-ELP-EL 233 (454)
T ss_dssp C-CCCCC----TTCCEEECCSSCCSS-CC-CCTTCTTCCEEECCSSCCSS-CCCC---CTTCCEEECCSSCCS-SCC-CC
T ss_pred c-cCCCc----ccccEEECcCCcCCc-Cc-cccCCCCCCEEECCCCcCCc-CCCC---cCcccEEECcCCcCC-ccc-cc
Confidence 3 23221 245555555555554 33 35555555555555555553 2221 135555555555555 233 25
Q ss_pred cCCCCCCEEeccCCcCcccCCccccCCCCCCeEEecCccccCCCChhhhcccCCCeEEccCCcCcccCCccccCCCCCCe
Q 005040 162 CHLERLNILNLSGNKLSGAIPQCLASLTSLRSLYLQSNKLSSSLPSSLWSLEYILRINLSSNSLKGTLPSNIQKLNVLID 241 (717)
Q Consensus 162 ~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~ 241 (717)
..+++|++|++++|++++ +|.. .++|+.|++++|++++ +|.. +++|++|++++|.+++. +.. .++|+.
T Consensus 234 ~~l~~L~~L~l~~N~l~~-l~~~---~~~L~~L~l~~N~l~~-l~~~---~~~L~~L~ls~N~l~~l-~~~---~~~L~~ 301 (454)
T 1jl5_A 234 QNLPFLTTIYADNNLLKT-LPDL---PPSLEALNVRDNYLTD-LPEL---PQSLTFLDVSENIFSGL-SEL---PPNLYY 301 (454)
T ss_dssp TTCTTCCEEECCSSCCSS-CCSC---CTTCCEEECCSSCCSC-CCCC---CTTCCEEECCSSCCSEE-SCC---CTTCCE
T ss_pred CCCCCCCEEECCCCcCCc-cccc---ccccCEEECCCCcccc-cCcc---cCcCCEEECcCCccCcc-cCc---CCcCCE
Confidence 555666666666666553 2321 2455566666665553 2322 25566666666665542 110 134555
Q ss_pred EEccCCCCCCCCcccccCC-cccccccccCccccCCCCccccccCccceEeccCCCCCCCCcccccccccccEEEccCCc
Q 005040 242 LDLSRNQLSSDIPSTIGTL-KNLETLSLAGNQFQGPIPESVGNLISLESLDFSNNNLSGKIPKSLEALSHLKQFNVSHNR 320 (717)
Q Consensus 242 L~l~~N~l~~~~~~~~~~l-~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~~~~~~~~~~l~~L~~L~l~~N~ 320 (717)
|++++|.+++ +..+ ++|++|++++|++++ +|.. +++|+.|+|++|++++ +|. .+++|+.|++++|+
T Consensus 302 L~l~~N~l~~-----i~~~~~~L~~L~Ls~N~l~~-lp~~---~~~L~~L~L~~N~l~~-lp~---~l~~L~~L~L~~N~ 368 (454)
T 1jl5_A 302 LNASSNEIRS-----LCDLPPSLEELNVSNNKLIE-LPAL---PPRLERLIASFNHLAE-VPE---LPQNLKQLHVEYNP 368 (454)
T ss_dssp EECCSSCCSE-----ECCCCTTCCEEECCSSCCSC-CCCC---CTTCCEEECCSSCCSC-CCC---CCTTCCEEECCSSC
T ss_pred EECcCCcCCc-----ccCCcCcCCEEECCCCcccc-cccc---CCcCCEEECCCCcccc-ccc---hhhhccEEECCCCC
Confidence 5555555553 1122 477777777777774 4433 4677788888887773 444 46777888888888
Q ss_pred ccc
Q 005040 321 LEG 323 (717)
Q Consensus 321 l~~ 323 (717)
+++
T Consensus 369 l~~ 371 (454)
T 1jl5_A 369 LRE 371 (454)
T ss_dssp CSS
T ss_pred CCc
Confidence 777
No 306
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.97 E-value=1.8e-29 Score=275.60 Aligned_cols=249 Identities=19% Similarity=0.154 Sum_probs=205.1
Q ss_pred CCCEEEcccccccCccCCcccccccccccCccCCcEEeccCCCCcccCCcchhccccccceeeecCCcceecCCccccCC
Q 005040 37 HLSVLSLMMNNLTTESSSADQWSFLSSLTNCRNLANLALASNPLGGILPPLIGNFSASLQNIYAFECKLGGSIPKEIGNL 116 (717)
Q Consensus 37 ~L~~L~L~~n~l~~~~~~~~~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~l~~~L~~L~l~~n~l~~~~~~~~~~l 116 (717)
..+.++.+++.++.+|... .++|++|+|++|.+++..+..|..+ ++|++|+|++|++.+..+..|.++
T Consensus 55 ~~~~v~c~~~~l~~iP~~~-----------~~~l~~L~L~~n~i~~~~~~~~~~l-~~L~~L~Ls~n~i~~~~~~~~~~l 122 (452)
T 3zyi_A 55 QFSKVVCTRRGLSEVPQGI-----------PSNTRYLNLMENNIQMIQADTFRHL-HHLEVLQLGRNSIRQIEVGAFNGL 122 (452)
T ss_dssp SSCEEECCSSCCSSCCSCC-----------CTTCSEEECCSSCCCEECTTTTTTC-TTCCEEECCSSCCCEECTTTTTTC
T ss_pred CCcEEEECCCCcCccCCCC-----------CCCccEEECcCCcCceECHHHcCCC-CCCCEEECCCCccCCcChhhccCc
Confidence 4567777777777766432 2577778888888877777777776 568888888888877777888888
Q ss_pred CCCcEEEccCCCCcccCCccccccCCCCEEeccCCcccccCCccccCCCCCCEEeccC-CcCcccCCccccCCCCCCeEE
Q 005040 117 RGLIVLSLGFNDLNGTIPTSIGTLQQLQGFYVPENNLQGYVPHDLCHLERLNILNLSG-NKLSGAIPQCLASLTSLRSLY 195 (717)
Q Consensus 117 ~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~-n~l~~~~~~~~~~l~~L~~L~ 195 (717)
++|++|+|++|+++...+..|.++++|++|+|++|+|+.+.+..|.++++|++|+|++ |.+....+..|.++++|+.|+
T Consensus 123 ~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~ 202 (452)
T 3zyi_A 123 ASLNTLELFDNWLTVIPSGAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLN 202 (452)
T ss_dssp TTCCEEECCSSCCSBCCTTTSSSCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCTTCCEEE
T ss_pred ccCCEEECCCCcCCccChhhhcccCCCCEEECCCCCcceeCHhHHhcCCcccEEeCCCCCCccccChhhccCCCCCCEEE
Confidence 8899999999988877777788888999999999988888777888889999999988 556655556788889999999
Q ss_pred ecCccccCCCChhhhcccCCCeEEccCCcCcccCCccccCCCCCCeEEccCCCCCCCCcccccCCcccccccccCccccC
Q 005040 196 LQSNKLSSSLPSSLWSLEYILRINLSSNSLKGTLPSNIQKLNVLIDLDLSRNQLSSDIPSTIGTLKNLETLSLAGNQFQG 275 (717)
Q Consensus 196 L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~ 275 (717)
|++|++++. | .+..+++|+.|+|++|.|++..|..|.++++|+.|+|++|.+++..+..|..+++|+.|+|++|++++
T Consensus 203 L~~n~l~~~-~-~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~ 280 (452)
T 3zyi_A 203 LGMCNIKDM-P-NLTPLVGLEELEMSGNHFPEIRPGSFHGLSSLKKLWVMNSQVSLIERNAFDGLASLVELNLAHNNLSS 280 (452)
T ss_dssp CTTSCCSSC-C-CCTTCTTCCEEECTTSCCSEECGGGGTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSC
T ss_pred CCCCccccc-c-cccccccccEEECcCCcCcccCcccccCccCCCEEEeCCCcCceECHHHhcCCCCCCEEECCCCcCCc
Confidence 999998854 4 47788899999999999988888889999999999999999998888888889999999999999987
Q ss_pred CCCccccccCccceEeccCCCCCC
Q 005040 276 PIPESVGNLISLESLDFSNNNLSG 299 (717)
Q Consensus 276 ~~~~~~~~l~~L~~L~L~~N~~~~ 299 (717)
..+..|..+++|+.|+|++|++..
T Consensus 281 ~~~~~~~~l~~L~~L~L~~Np~~C 304 (452)
T 3zyi_A 281 LPHDLFTPLRYLVELHLHHNPWNC 304 (452)
T ss_dssp CCTTSSTTCTTCCEEECCSSCEEC
T ss_pred cChHHhccccCCCEEEccCCCcCC
Confidence 777788889999999999998864
No 307
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.96 E-value=6.4e-33 Score=304.26 Aligned_cols=315 Identities=19% Similarity=0.198 Sum_probs=168.8
Q ss_pred CccccCCCCCcEEECCCCcceecCCcCC-CCCC----CCCEEEcccccccCccCCcccccccccccCccCCcEEeccCCC
Q 005040 5 PNSITNATKLIGLDLGLNSFSGHIPNTF-GNLR----HLSVLSLMMNNLTTESSSADQWSFLSSLTNCRNLANLALASNP 79 (717)
Q Consensus 5 P~~~~~l~~L~~L~L~~n~i~~~~~~~~-~~l~----~L~~L~L~~n~l~~~~~~~~~~~~~~~l~~l~~L~~L~L~~N~ 79 (717)
|..+..+++|++|+|++|.|++..+..+ ..++ +|++|+|++|+|++.... .++..+..+++|++|+|++|.
T Consensus 49 ~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~L~~n~i~~~~~~----~l~~~l~~~~~L~~L~Ls~n~ 124 (461)
T 1z7x_W 49 SSALRVNPALAELNLRSNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGCG----VLSSTLRTLPTLQELHLSDNL 124 (461)
T ss_dssp HHHHHTCTTCCEEECTTCCCHHHHHHHHHHTTCSTTCCCCEEECTTSCCBGGGHH----HHHHHTTSCTTCCEEECCSSB
T ss_pred HHHHHhCCCcCEEeCCCCcCChHHHHHHHHHHhhCCCceeEEEccCCCCCHHHHH----HHHHHHccCCceeEEECCCCc
Confidence 3445555566666666665554333222 2233 466666666655532210 122335556666666666666
Q ss_pred CcccCCcchhcc----ccccceeeecCCcceec----CCccccCCCCCcEEEccCCCCcccCCcccc-----ccCCCCEE
Q 005040 80 LGGILPPLIGNF----SASLQNIYAFECKLGGS----IPKEIGNLRGLIVLSLGFNDLNGTIPTSIG-----TLQQLQGF 146 (717)
Q Consensus 80 l~~~~~~~~~~l----~~~L~~L~l~~n~l~~~----~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~-----~l~~L~~L 146 (717)
++...+..+... ..+|++|++++|+++.. ++..+..+++|++|+|++|.++...+..+. .+++|++|
T Consensus 125 i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~L~~L 204 (461)
T 1z7x_W 125 LGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLASVLRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEAL 204 (461)
T ss_dssp CHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHHHSCCCCCEE
T ss_pred CchHHHHHHHHHHhcCCCcceEEECCCCCCCHHHHHHHHHHHhhCCCCCEEECcCCCcchHHHHHHHHHHhcCCCCceEE
Confidence 654433333321 12466666666666542 234445556666666666666543333332 24466666
Q ss_pred eccCCccccc----CCccccCCCCCCEEeccCCcCcccC-----CccccCCCCCCeEEecCccccCC----CChhhhccc
Q 005040 147 YVPENNLQGY----VPHDLCHLERLNILNLSGNKLSGAI-----PQCLASLTSLRSLYLQSNKLSSS----LPSSLWSLE 213 (717)
Q Consensus 147 ~l~~n~i~~~----~~~~~~~l~~L~~L~L~~n~l~~~~-----~~~~~~l~~L~~L~L~~N~l~~~----~~~~~~~l~ 213 (717)
++++|.++.. .+..+..+++|++|+|++|.+++.. +..+..+++|++|+|++|.+++. ++..+..++
T Consensus 205 ~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~ 284 (461)
T 1z7x_W 205 KLESCGVTSDNCRDLCGIVASKASLRELALGSNKLGDVGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKE 284 (461)
T ss_dssp ECTTSCCBTTHHHHHHHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCT
T ss_pred EccCCCCcHHHHHHHHHHHHhCCCccEEeccCCcCChHHHHHHHHHHhcCCCCceEEECcCCCCCHHHHHHHHHHHhhCC
Confidence 6666666543 2444555666666666666665432 12222456666666666666632 344555566
Q ss_pred CCCeEEccCCcCcccCCccccC-----CCCCCeEEccCCCCCCC----CcccccCCcccccccccCccccCCCCccccc-
Q 005040 214 YILRINLSSNSLKGTLPSNIQK-----LNVLIDLDLSRNQLSSD----IPSTIGTLKNLETLSLAGNQFQGPIPESVGN- 283 (717)
Q Consensus 214 ~L~~L~l~~N~l~~~~~~~~~~-----l~~L~~L~l~~N~l~~~----~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~- 283 (717)
+|++|++++|.+++..+..+.. .++|+.|++++|.+++. ++..+..+++|++|++++|++++..+..+..
T Consensus 285 ~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~ 364 (461)
T 1z7x_W 285 SLKELSLAGNELGDEGARLLCETLLEPGCQLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQISNNRLEDAGVRELCQG 364 (461)
T ss_dssp TCCEEECTTCCCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCSSCCEEECCSSBCHHHHHHHHHHH
T ss_pred CcceEECCCCCCchHHHHHHHHHhccCCccceeeEcCCCCCchHHHHHHHHHHhhCCCccEEEccCCccccccHHHHHHH
Confidence 6666666666665433333322 24666666666666643 2334455566666666666666544444432
Q ss_pred ----cCccceEeccCCCCCC----CCcccccccccccEEEccCCcccc
Q 005040 284 ----LISLESLDFSNNNLSG----KIPKSLEALSHLKQFNVSHNRLEG 323 (717)
Q Consensus 284 ----l~~L~~L~L~~N~~~~----~~~~~~~~l~~L~~L~l~~N~l~~ 323 (717)
.++|+.|+|++|++++ .+|..+..+++|+.|++++|++++
T Consensus 365 l~~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~l~~N~i~~ 412 (461)
T 1z7x_W 365 LGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGD 412 (461)
T ss_dssp HTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCCCCCEEECCSSSCCH
T ss_pred HcCCCCceEEEECCCCCCChhhHHHHHHHHHhCCCccEEECCCCCCCH
Confidence 4566666666666664 455566666666666666666654
No 308
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.96 E-value=2.6e-29 Score=261.45 Aligned_cols=224 Identities=22% Similarity=0.288 Sum_probs=176.0
Q ss_pred ccceeeecCCcceecCCccccCCCCCcEEEccCCCCcccCCccccccCCCCEEeccCCcccccCCccccCCCCCCEEecc
Q 005040 94 SLQNIYAFECKLGGSIPKEIGNLRGLIVLSLGFNDLNGTIPTSIGTLQQLQGFYVPENNLQGYVPHDLCHLERLNILNLS 173 (717)
Q Consensus 94 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~ 173 (717)
.++.|+|++|++. .+|..+.++++|++|+|++|.++ .+|..|+++++|++|+|++|.++ .+|..+.++++|++|+|+
T Consensus 82 ~l~~L~L~~n~l~-~lp~~l~~l~~L~~L~L~~n~l~-~lp~~~~~l~~L~~L~Ls~n~l~-~lp~~l~~l~~L~~L~L~ 158 (328)
T 4fcg_A 82 GRVALELRSVPLP-QFPDQAFRLSHLQHMTIDAAGLM-ELPDTMQQFAGLETLTLARNPLR-ALPASIASLNRLRELSIR 158 (328)
T ss_dssp TCCEEEEESSCCS-SCCSCGGGGTTCSEEEEESSCCC-CCCSCGGGGTTCSEEEEESCCCC-CCCGGGGGCTTCCEEEEE
T ss_pred ceeEEEccCCCch-hcChhhhhCCCCCEEECCCCCcc-chhHHHhccCCCCEEECCCCccc-cCcHHHhcCcCCCEEECC
Confidence 4556666666655 45555666666777777777666 56666666777777777777666 456666667777777777
Q ss_pred CCcCcccCCcccc---------CCCCCCeEEecCccccCCCChhhhcccCCCeEEccCCcCcccCCccccCCCCCCeEEc
Q 005040 174 GNKLSGAIPQCLA---------SLTSLRSLYLQSNKLSSSLPSSLWSLEYILRINLSSNSLKGTLPSNIQKLNVLIDLDL 244 (717)
Q Consensus 174 ~n~l~~~~~~~~~---------~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l 244 (717)
+|.+.+.+|..+. ++++|++|+|++|+++ .+|..+..+++|++|+|++|.+++ +|..+..+++|+.|+|
T Consensus 159 ~n~~~~~~p~~~~~~~~~~~~~~l~~L~~L~L~~n~l~-~lp~~l~~l~~L~~L~L~~N~l~~-l~~~l~~l~~L~~L~L 236 (328)
T 4fcg_A 159 ACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTGIR-SLPASIANLQNLKSLKIRNSPLSA-LGPAIHHLPKLEELDL 236 (328)
T ss_dssp EETTCCCCCSCSEEEC-CCCEEESTTCCEEEEEEECCC-CCCGGGGGCTTCCEEEEESSCCCC-CCGGGGGCTTCCEEEC
T ss_pred CCCCccccChhHhhccchhhhccCCCCCEEECcCCCcC-cchHhhcCCCCCCEEEccCCCCCc-CchhhccCCCCCEEEC
Confidence 7666556665544 4888999999999988 678888889999999999999884 5667888999999999
Q ss_pred cCCCCCCCCcccccCCcccccccccCccccCCCCccccccCccceEeccCCCCCCCCcccccccccccEEEccCCccc
Q 005040 245 SRNQLSSDIPSTIGTLKNLETLSLAGNQFQGPIPESVGNLISLESLDFSNNNLSGKIPKSLEALSHLKQFNVSHNRLE 322 (717)
Q Consensus 245 ~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~~~~~~~~~~l~~L~~L~l~~N~l~ 322 (717)
++|.+.+.+|..++.+++|++|+|++|++.+.+|..+.++++|+.|+|++|++.+.+|..+..+++|+.+++..|.+.
T Consensus 237 s~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~iP~~l~~L~~L~~l~l~~~~~~ 314 (328)
T 4fcg_A 237 RGCTALRNYPPIFGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLPSLIAQLPANCIILVPPHLQA 314 (328)
T ss_dssp TTCTTCCBCCCCTTCCCCCCEEECTTCTTCCBCCTTGGGCTTCCEEECTTCTTCCCCCGGGGGSCTTCEEECCGGGSC
T ss_pred cCCcchhhhHHHhcCCCCCCEEECCCCCchhhcchhhhcCCCCCEEeCCCCCchhhccHHHhhccCceEEeCCHHHHH
Confidence 999888888888899999999999999888888988999999999999999998899999999999999998877665
No 309
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.96 E-value=7.5e-31 Score=271.57 Aligned_cols=250 Identities=19% Similarity=0.212 Sum_probs=202.3
Q ss_pred ccCccCCcEEeccCCCCcccCCcchhccccccceeeecCCcce-ecCCcccc-------CCCCCcEEEccCCCCcccCCc
Q 005040 64 LTNCRNLANLALASNPLGGILPPLIGNFSASLQNIYAFECKLG-GSIPKEIG-------NLRGLIVLSLGFNDLNGTIPT 135 (717)
Q Consensus 64 l~~l~~L~~L~L~~N~l~~~~~~~~~~l~~~L~~L~l~~n~l~-~~~~~~~~-------~l~~L~~L~L~~n~l~~~~~~ 135 (717)
+...++|++|++++|.+ .+|..+... |+.|++++|++. ..+|..+. ++++|++|+|++|++++..|.
T Consensus 39 ~~~~~~L~~l~l~~n~l--~~p~~~~~~---L~~L~L~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~ 113 (312)
T 1wwl_A 39 YGGGRSLEYLLKRVDTE--ADLGQFTDI---IKSLSLKRLTVRAARIPSRILFGALRVLGISGLQELTLENLEVTGTAPP 113 (312)
T ss_dssp EEEEEECTTHHHHCCTT--CCCHHHHHH---HHHCCCCEEEEEEEECBHHHHHHHHHHHTTSCCCEEEEEEEBCBSCCCC
T ss_pred EccCCCceeEeeccccc--ccHHHHHHH---HhhcccccccccCCCcCHHHHHHHHHhcCcCCccEEEccCCcccchhHH
Confidence 56677888888888888 566655543 888888888884 45565555 788999999999999887887
Q ss_pred cc--cccCCCCEEeccCCcccccCCccccCC-----CCCCEEeccCCcCcccCCccccCCCCCCeEEecCccccCC--CC
Q 005040 136 SI--GTLQQLQGFYVPENNLQGYVPHDLCHL-----ERLNILNLSGNKLSGAIPQCLASLTSLRSLYLQSNKLSSS--LP 206 (717)
Q Consensus 136 ~~--~~l~~L~~L~l~~n~i~~~~~~~~~~l-----~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~--~~ 206 (717)
.+ ..+++|++|+|++|++++. |..+..+ ++|++|+|++|++++..+..|+.+++|++|+|++|++.+. .+
T Consensus 114 ~~~~~~l~~L~~L~Ls~N~l~~~-~~~~~~l~~~~~~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~ 192 (312)
T 1wwl_A 114 PLLEATGPDLNILNLRNVSWATR-DAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGERGLI 192 (312)
T ss_dssp CSSSCCSCCCSEEEEESCBCSSS-SSHHHHHHTTCCTTCCEEEEESCSCCCCCTTTCCCCSSCCEEECCSCTTCHHHHHH
T ss_pred HHHHhcCCCccEEEccCCCCcch-hHHHHHHHHhhcCCCcEEEeeCCCCccchHHHhccCCCCCEEECCCCCcCcchHHH
Confidence 76 8899999999999999877 7777776 8899999999999887778899999999999999987643 23
Q ss_pred hhh--hcccCCCeEEccCCcCcc---cCCccccCCCCCCeEEccCCCCCCCCc-ccccCCcccccccccCccccCCCCcc
Q 005040 207 SSL--WSLEYILRINLSSNSLKG---TLPSNIQKLNVLIDLDLSRNQLSSDIP-STIGTLKNLETLSLAGNQFQGPIPES 280 (717)
Q Consensus 207 ~~~--~~l~~L~~L~l~~N~l~~---~~~~~~~~l~~L~~L~l~~N~l~~~~~-~~~~~l~~L~~L~l~~N~l~~~~~~~ 280 (717)
..+ ..+++|++|+|++|+|++ .....+..+++|+.|++++|.+++..| ..+..+++|++|+|++|+++ .+|..
T Consensus 193 ~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~Ls~N~l~-~ip~~ 271 (312)
T 1wwl_A 193 SALCPLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTGLK-QVPKG 271 (312)
T ss_dssp HHSCTTSCTTCCEEECTTSCCCCHHHHHHHHHHTTCCCSEEECTTSCCCSSCCCSCCCCCTTCCEEECTTSCCS-SCCSS
T ss_pred HHHHhccCCCCCEEECCCCcCcchHHHHHHHHhcCCCCCEEECCCCcCCcccchhhhhhcCCCCEEECCCCccC-hhhhh
Confidence 334 788999999999999883 222345678899999999999998664 45667889999999999998 67776
Q ss_pred ccccCccceEeccCCCCCCCCcccccccccccEEEccCCccccc
Q 005040 281 VGNLISLESLDFSNNNLSGKIPKSLEALSHLKQFNVSHNRLEGE 324 (717)
Q Consensus 281 ~~~l~~L~~L~L~~N~~~~~~~~~~~~l~~L~~L~l~~N~l~~~ 324 (717)
+. ++|++|+|++|+|++. |. +..+++|+.|+|++|++++.
T Consensus 272 ~~--~~L~~L~Ls~N~l~~~-p~-~~~l~~L~~L~L~~N~l~~~ 311 (312)
T 1wwl_A 272 LP--AKLSVLDLSYNRLDRN-PS-PDELPQVGNLSLKGNPFLDS 311 (312)
T ss_dssp CC--SEEEEEECCSSCCCSC-CC-TTTSCEEEEEECTTCTTTCC
T ss_pred cc--CCceEEECCCCCCCCC-hh-HhhCCCCCEEeccCCCCCCC
Confidence 66 7899999999999866 55 88999999999999998763
No 310
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.96 E-value=4.5e-29 Score=259.67 Aligned_cols=225 Identities=23% Similarity=0.284 Sum_probs=173.8
Q ss_pred cCCcEEeccCCCCcccCCcchhccccccceeeecCCcceecCCccccCCCCCcEEEccCCCCcccCCccccccCCCCEEe
Q 005040 68 RNLANLALASNPLGGILPPLIGNFSASLQNIYAFECKLGGSIPKEIGNLRGLIVLSLGFNDLNGTIPTSIGTLQQLQGFY 147 (717)
Q Consensus 68 ~~L~~L~L~~N~l~~~~~~~~~~l~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ 147 (717)
.+++.|+|++|.++ .+|..+..+ ++|++|+|++|.+. .+|..++++++|++|+|++|.++ .+|..|.++++|++|+
T Consensus 81 ~~l~~L~L~~n~l~-~lp~~l~~l-~~L~~L~L~~n~l~-~lp~~~~~l~~L~~L~Ls~n~l~-~lp~~l~~l~~L~~L~ 156 (328)
T 4fcg_A 81 PGRVALELRSVPLP-QFPDQAFRL-SHLQHMTIDAAGLM-ELPDTMQQFAGLETLTLARNPLR-ALPASIASLNRLRELS 156 (328)
T ss_dssp TTCCEEEEESSCCS-SCCSCGGGG-TTCSEEEEESSCCC-CCCSCGGGGTTCSEEEEESCCCC-CCCGGGGGCTTCCEEE
T ss_pred cceeEEEccCCCch-hcChhhhhC-CCCCEEECCCCCcc-chhHHHhccCCCCEEECCCCccc-cCcHHHhcCcCCCEEE
Confidence 45555555555555 444445554 45666666666555 55666666666666666666666 4566666666666666
Q ss_pred ccCCcccccCCcccc---------CCCCCCEEeccCCcCcccCCccccCCCCCCeEEecCccccCCCChhhhcccCCCeE
Q 005040 148 VPENNLQGYVPHDLC---------HLERLNILNLSGNKLSGAIPQCLASLTSLRSLYLQSNKLSSSLPSSLWSLEYILRI 218 (717)
Q Consensus 148 l~~n~i~~~~~~~~~---------~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L 218 (717)
|++|++.+..|..+. ++++|++|+|++|+++ .+|..+..+++|++|+|++|++++ +|..+..+++|++|
T Consensus 157 L~~n~~~~~~p~~~~~~~~~~~~~~l~~L~~L~L~~n~l~-~lp~~l~~l~~L~~L~L~~N~l~~-l~~~l~~l~~L~~L 234 (328)
T 4fcg_A 157 IRACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTGIR-SLPASIANLQNLKSLKIRNSPLSA-LGPAIHHLPKLEEL 234 (328)
T ss_dssp EEEETTCCCCCSCSEEEC-CCCEEESTTCCEEEEEEECCC-CCCGGGGGCTTCCEEEEESSCCCC-CCGGGGGCTTCCEE
T ss_pred CCCCCCccccChhHhhccchhhhccCCCCCEEECcCCCcC-cchHhhcCCCCCCEEEccCCCCCc-CchhhccCCCCCEE
Confidence 666666555555544 4889999999999998 677888899999999999999984 56678889999999
Q ss_pred EccCCcCcccCCccccCCCCCCeEEccCCCCCCCCcccccCCcccccccccCccccCCCCccccccCccceEeccCCCCC
Q 005040 219 NLSSNSLKGTLPSNIQKLNVLIDLDLSRNQLSSDIPSTIGTLKNLETLSLAGNQFQGPIPESVGNLISLESLDFSNNNLS 298 (717)
Q Consensus 219 ~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~ 298 (717)
+|++|.+.+.+|..+..+++|+.|+|++|.+.+.+|..+..+++|++|+|++|++.+.+|..++++++|+.+++..|.+.
T Consensus 235 ~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~iP~~l~~L~~L~~l~l~~~~~~ 314 (328)
T 4fcg_A 235 DLRGCTALRNYPPIFGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLPSLIAQLPANCIILVPPHLQA 314 (328)
T ss_dssp ECTTCTTCCBCCCCTTCCCCCCEEECTTCTTCCBCCTTGGGCTTCCEEECTTCTTCCCCCGGGGGSCTTCEEECCGGGSC
T ss_pred ECcCCcchhhhHHHhcCCCCCCEEECCCCCchhhcchhhhcCCCCCEEeCCCCCchhhccHHHhhccCceEEeCCHHHHH
Confidence 99999988888999999999999999999888888988999999999999999998899999999999999998887665
No 311
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.96 E-value=2.9e-32 Score=299.09 Aligned_cols=310 Identities=22% Similarity=0.193 Sum_probs=220.6
Q ss_pred CCCcEEECCCCcceecCCcC-CCCCCCCCEEEcccccccCccCCcccccccccccCccCCcEEeccCCCCcccCCcchhc
Q 005040 12 TKLIGLDLGLNSFSGHIPNT-FGNLRHLSVLSLMMNNLTTESSSADQWSFLSSLTNCRNLANLALASNPLGGILPPLIGN 90 (717)
Q Consensus 12 ~~L~~L~L~~n~i~~~~~~~-~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~ 90 (717)
++|++|||++|+++...... |..+++|++|+|++|++++.... .++..+..+++|++|+|++|.++...+..+..
T Consensus 3 ~~l~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~----~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~ 78 (461)
T 1z7x_W 3 LDIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCK----DISSALRVNPALAELNLRSNELGDVGVHCVLQ 78 (461)
T ss_dssp EEEEEEEEESCCCCHHHHHHHHHHHTTCSEEEEESSCCCHHHHH----HHHHHHHTCTTCCEEECTTCCCHHHHHHHHHH
T ss_pred ccceehhhhhcccCchhHHHHHhhcCCccEEEccCCCCCHHHHH----HHHHHHHhCCCcCEEeCCCCcCChHHHHHHHH
Confidence 46788888888887554443 77788888888888888753211 12344667788888888888887655555554
Q ss_pred ccc----ccceeeecCCccee----cCCccccCCCCCcEEEccCCCCcccCCcccc-----ccCCCCEEeccCCcccccC
Q 005040 91 FSA----SLQNIYAFECKLGG----SIPKEIGNLRGLIVLSLGFNDLNGTIPTSIG-----TLQQLQGFYVPENNLQGYV 157 (717)
Q Consensus 91 l~~----~L~~L~l~~n~l~~----~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~-----~l~~L~~L~l~~n~i~~~~ 157 (717)
..+ +|++|++++|+++. .++..+..+++|++|+|++|.++...+..+. ..++|++|+|++|++++..
T Consensus 79 ~l~~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~ 158 (461)
T 1z7x_W 79 GLQTPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAAS 158 (461)
T ss_dssp TTCSTTCCCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGG
T ss_pred HHhhCCCceeEEEccCCCCCHHHHHHHHHHHccCCceeEEECCCCcCchHHHHHHHHHHhcCCCcceEEECCCCCCCHHH
Confidence 333 58888888888874 4577788888888888888888754444333 2457888888888888643
Q ss_pred ----CccccCCCCCCEEeccCCcCcccCCcccc-----CCCCCCeEEecCccccCC----CChhhhcccCCCeEEccCCc
Q 005040 158 ----PHDLCHLERLNILNLSGNKLSGAIPQCLA-----SLTSLRSLYLQSNKLSSS----LPSSLWSLEYILRINLSSNS 224 (717)
Q Consensus 158 ----~~~~~~l~~L~~L~L~~n~l~~~~~~~~~-----~l~~L~~L~L~~N~l~~~----~~~~~~~l~~L~~L~l~~N~ 224 (717)
+..+..+++|++|+|++|.+++..+..+. ..++|++|+|++|.+++. ++..+..+++|++|++++|.
T Consensus 159 ~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~ 238 (461)
T 1z7x_W 159 CEPLASVLRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNK 238 (461)
T ss_dssp HHHHHHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHHHSCCCCCEEECTTSCCBTTHHHHHHHHHHHCTTCCEEECCSSB
T ss_pred HHHHHHHHhhCCCCCEEECcCCCcchHHHHHHHHHHhcCCCCceEEEccCCCCcHHHHHHHHHHHHhCCCccEEeccCCc
Confidence 44566678888888888888755444443 256888888888888753 46667778888888888888
Q ss_pred CcccC-----CccccCCCCCCeEEccCCCCCCC----CcccccCCcccccccccCccccCCCCcccccc-----CccceE
Q 005040 225 LKGTL-----PSNIQKLNVLIDLDLSRNQLSSD----IPSTIGTLKNLETLSLAGNQFQGPIPESVGNL-----ISLESL 290 (717)
Q Consensus 225 l~~~~-----~~~~~~l~~L~~L~l~~N~l~~~----~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l-----~~L~~L 290 (717)
+++.. +..+..+++|+.|++++|.+++. ++..+..+++|++|++++|.+.+..+..+... ++|+.|
T Consensus 239 l~~~~~~~l~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L 318 (461)
T 1z7x_W 239 LGDVGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDEGARLLCETLLEPGCQLESL 318 (461)
T ss_dssp CHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCTTCCEEECTTCCCHHHHHHHHHHHHTSTTCCCCEE
T ss_pred CChHHHHHHHHHHhcCCCCceEEECcCCCCCHHHHHHHHHHHhhCCCcceEECCCCCCchHHHHHHHHHhccCCccceee
Confidence 77532 22334577888888888888753 45566678888888888888876555444432 588888
Q ss_pred eccCCCCCCC----CcccccccccccEEEccCCcccccc
Q 005040 291 DFSNNNLSGK----IPKSLEALSHLKQFNVSHNRLEGEI 325 (717)
Q Consensus 291 ~L~~N~~~~~----~~~~~~~l~~L~~L~l~~N~l~~~~ 325 (717)
+|++|.+++. ++..+..+++|+.|++++|++++..
T Consensus 319 ~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~ 357 (461)
T 1z7x_W 319 WVKSCSFTAACCSHFSSVLAQNRFLLELQISNNRLEDAG 357 (461)
T ss_dssp ECTTSCCBGGGHHHHHHHHHHCSSCCEEECCSSBCHHHH
T ss_pred EcCCCCCchHHHHHHHHHHhhCCCccEEEccCCcccccc
Confidence 8888888765 4556667788888888888877643
No 312
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.96 E-value=6.9e-28 Score=269.57 Aligned_cols=263 Identities=27% Similarity=0.358 Sum_probs=222.3
Q ss_pred CCCcEEECCCCcceecCCcCCCCCCCCCEEEcccccccCccCCcccccccccccCccCCcEEeccCCCCcccCCcchhcc
Q 005040 12 TKLIGLDLGLNSFSGHIPNTFGNLRHLSVLSLMMNNLTTESSSADQWSFLSSLTNCRNLANLALASNPLGGILPPLIGNF 91 (717)
Q Consensus 12 ~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~l 91 (717)
.++++|++++|+|+ .+|..+. ++|++|+|++|+|+.++. .+++|++|+|++|++++ +|. .
T Consensus 40 ~~l~~L~ls~n~L~-~lp~~l~--~~L~~L~L~~N~l~~lp~------------~l~~L~~L~Ls~N~l~~-lp~----~ 99 (622)
T 3g06_A 40 NGNAVLNVGESGLT-TLPDCLP--AHITTLVIPDNNLTSLPA------------LPPELRTLEVSGNQLTS-LPV----L 99 (622)
T ss_dssp HCCCEEECCSSCCS-CCCSCCC--TTCSEEEECSCCCSCCCC------------CCTTCCEEEECSCCCSC-CCC----C
T ss_pred CCCcEEEecCCCcC-ccChhhC--CCCcEEEecCCCCCCCCC------------cCCCCCEEEcCCCcCCc-CCC----C
Confidence 36899999999999 6777665 799999999999998763 46899999999999985 444 2
Q ss_pred ccccceeeecCCcceecCCccccCCCCCcEEEccCCCCcccCCccccccCCCCEEeccCCcccccCCccccCCCCCCEEe
Q 005040 92 SASLQNIYAFECKLGGSIPKEIGNLRGLIVLSLGFNDLNGTIPTSIGTLQQLQGFYVPENNLQGYVPHDLCHLERLNILN 171 (717)
Q Consensus 92 ~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~ 171 (717)
.++|++|++++|++++ +|. .+++|++|+|++|+++. +|.. +++|++|+|++|+++++ |. .+.+|+.|+
T Consensus 100 l~~L~~L~Ls~N~l~~-l~~---~l~~L~~L~L~~N~l~~-lp~~---l~~L~~L~Ls~N~l~~l-~~---~~~~L~~L~ 167 (622)
T 3g06_A 100 PPGLLELSIFSNPLTH-LPA---LPSGLCKLWIFGNQLTS-LPVL---PPGLQELSVSDNQLASL-PA---LPSELCKLW 167 (622)
T ss_dssp CTTCCEEEECSCCCCC-CCC---CCTTCCEEECCSSCCSC-CCCC---CTTCCEEECCSSCCSCC-CC---CCTTCCEEE
T ss_pred CCCCCEEECcCCcCCC-CCC---CCCCcCEEECCCCCCCc-CCCC---CCCCCEEECcCCcCCCc-CC---ccCCCCEEE
Confidence 3689999999999985 444 67899999999999995 4543 58999999999999964 33 357899999
Q ss_pred ccCCcCcccCCccccCCCCCCeEEecCccccCCCChhhhcccCCCeEEccCCcCcccCCccccCCCCCCeEEccCCCCCC
Q 005040 172 LSGNKLSGAIPQCLASLTSLRSLYLQSNKLSSSLPSSLWSLEYILRINLSSNSLKGTLPSNIQKLNVLIDLDLSRNQLSS 251 (717)
Q Consensus 172 L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~ 251 (717)
+++|.|+. +| ..+++|+.|+|++|++++ +|. .+++|+.|++++|.++. +|. .+++|+.|+|++|.|++
T Consensus 168 L~~N~l~~-l~---~~~~~L~~L~Ls~N~l~~-l~~---~~~~L~~L~L~~N~l~~-l~~---~~~~L~~L~Ls~N~L~~ 235 (622)
T 3g06_A 168 AYNNQLTS-LP---MLPSGLQELSVSDNQLAS-LPT---LPSELYKLWAYNNRLTS-LPA---LPSGLKELIVSGNRLTS 235 (622)
T ss_dssp CCSSCCSC-CC---CCCTTCCEEECCSSCCSC-CCC---CCTTCCEEECCSSCCSS-CCC---CCTTCCEEECCSSCCSC
T ss_pred CCCCCCCC-Cc---ccCCCCcEEECCCCCCCC-CCC---ccchhhEEECcCCcccc-cCC---CCCCCCEEEccCCccCc
Confidence 99999995 55 456899999999999995 443 35899999999999994 443 35789999999999997
Q ss_pred CCcccccCCcccccccccCccccCCCCccccccCccceEeccCCCCCCCCcccccccccccEEEccCCcccccccc
Q 005040 252 DIPSTIGTLKNLETLSLAGNQFQGPIPESVGNLISLESLDFSNNNLSGKIPKSLEALSHLKQFNVSHNRLEGEIPV 327 (717)
Q Consensus 252 ~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~~~~~~~~~~l~~L~~L~l~~N~l~~~~p~ 327 (717)
+| ..+++|++|+|++|+|+. +|. .+++|+.|+|++|+|+ .+|..+..+++|+.|+|++|++++..|.
T Consensus 236 -lp---~~l~~L~~L~Ls~N~L~~-lp~---~~~~L~~L~Ls~N~L~-~lp~~l~~l~~L~~L~L~~N~l~~~~~~ 302 (622)
T 3g06_A 236 -LP---VLPSELKELMVSGNRLTS-LPM---LPSGLLSLSVYRNQLT-RLPESLIHLSSETTVNLEGNPLSERTLQ 302 (622)
T ss_dssp -CC---CCCTTCCEEECCSSCCSC-CCC---CCTTCCEEECCSSCCC-SCCGGGGGSCTTCEEECCSCCCCHHHHH
T ss_pred -CC---CCCCcCcEEECCCCCCCc-CCc---ccccCcEEeCCCCCCC-cCCHHHhhccccCEEEecCCCCCCcCHH
Confidence 55 456899999999999984 555 6789999999999999 7788999999999999999999988775
No 313
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.96 E-value=1.4e-30 Score=270.15 Aligned_cols=246 Identities=19% Similarity=0.184 Sum_probs=169.3
Q ss_pred CccCCcEEeccCCCCcccCCcchhccccccceeeecCCcceecCCccccCCCCCcEEEccCCCCcccCCccccccCCCCE
Q 005040 66 NCRNLANLALASNPLGGILPPLIGNFSASLQNIYAFECKLGGSIPKEIGNLRGLIVLSLGFNDLNGTIPTSIGTLQQLQG 145 (717)
Q Consensus 66 ~l~~L~~L~L~~N~l~~~~~~~~~~l~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~ 145 (717)
.+++|++|+|++|++++..|..+..+ ++|++|++++|++.+..+ +..+++|++|+|++|.+++. ...++|++
T Consensus 32 ~~~~L~~L~L~~n~l~~~~~~~~~~l-~~L~~L~Ls~n~l~~~~~--~~~l~~L~~L~Ls~n~l~~l-----~~~~~L~~ 103 (317)
T 3o53_A 32 SAWNVKELDLSGNPLSQISAADLAPF-TKLELLNLSSNVLYETLD--LESLSTLRTLDLNNNYVQEL-----LVGPSIET 103 (317)
T ss_dssp TGGGCSEEECTTSCCCCCCHHHHTTC-TTCCEEECTTSCCEEEEE--ETTCTTCCEEECCSSEEEEE-----EECTTCCE
T ss_pred cCCCCCEEECcCCccCcCCHHHhhCC-CcCCEEECCCCcCCcchh--hhhcCCCCEEECcCCccccc-----cCCCCcCE
Confidence 34445555555555544444444444 345555555555544333 66777777777777777633 23377777
Q ss_pred EeccCCcccccCCccccCCCCCCEEeccCCcCcccCCccccCCCCCCeEEecCccccCCCChhhh-cccCCCeEEccCCc
Q 005040 146 FYVPENNLQGYVPHDLCHLERLNILNLSGNKLSGAIPQCLASLTSLRSLYLQSNKLSSSLPSSLW-SLEYILRINLSSNS 224 (717)
Q Consensus 146 L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~-~l~~L~~L~l~~N~ 224 (717)
|++++|++++..+. .+++|++|+|++|++++..+..+..+++|++|+|++|++++..+..+. .+++|++|+|++|.
T Consensus 104 L~l~~n~l~~~~~~---~~~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~ 180 (317)
T 3o53_A 104 LHAANNNISRVSCS---RGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNF 180 (317)
T ss_dssp EECCSSCCSEEEEC---CCSSCEEEECCSSCCCSGGGBCTGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSC
T ss_pred EECCCCccCCcCcc---ccCCCCEEECCCCCCCCccchhhhccCCCCEEECCCCCCCcccHHHHhhccCcCCEEECCCCc
Confidence 77777777765443 356788888888888876666777788888888888888766666553 67888888888888
Q ss_pred CcccCCccccCCCCCCeEEccCCCCCCCCcccccCCcccccccccCccccCCCCccccccCccceEeccCCCCC-CCCcc
Q 005040 225 LKGTLPSNIQKLNVLIDLDLSRNQLSSDIPSTIGTLKNLETLSLAGNQFQGPIPESVGNLISLESLDFSNNNLS-GKIPK 303 (717)
Q Consensus 225 l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~-~~~~~ 303 (717)
|++. + ....+++|++|+|++|.+++. |..+..+++|++|++++|+++ .+|..+..+++|+.|+|++|++. +.+|.
T Consensus 181 l~~~-~-~~~~l~~L~~L~Ls~N~l~~l-~~~~~~l~~L~~L~L~~N~l~-~l~~~~~~l~~L~~L~l~~N~~~~~~~~~ 256 (317)
T 3o53_A 181 IYDV-K-GQVVFAKLKTLDLSSNKLAFM-GPEFQSAAGVTWISLRNNKLV-LIEKALRFSQNLEHFDLRGNGFHCGTLRD 256 (317)
T ss_dssp CCEE-E-CCCCCTTCCEEECCSSCCCEE-CGGGGGGTTCSEEECTTSCCC-EECTTCCCCTTCCEEECTTCCCBHHHHHH
T ss_pred Cccc-c-cccccccCCEEECCCCcCCcc-hhhhcccCcccEEECcCCccc-chhhHhhcCCCCCEEEccCCCccCcCHHH
Confidence 8755 2 233478888888888888864 444778888888888888887 46777888888888888888887 66777
Q ss_pred cccccccccEEEccCC-ccccccc
Q 005040 304 SLEALSHLKQFNVSHN-RLEGEIP 326 (717)
Q Consensus 304 ~~~~l~~L~~L~l~~N-~l~~~~p 326 (717)
.+..+++|+.|++.+| .+++..|
T Consensus 257 ~~~~~~~L~~l~l~~~~~l~~~~~ 280 (317)
T 3o53_A 257 FFSKNQRVQTVAKQTVKKLTGQNE 280 (317)
T ss_dssp HHHTCHHHHHHHHHHHHHHHSSSS
T ss_pred HHhccccceEEECCCchhccCCch
Confidence 8888888888888844 4555443
No 314
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.96 E-value=4.3e-30 Score=265.88 Aligned_cols=251 Identities=19% Similarity=0.239 Sum_probs=210.5
Q ss_pred CCCCCCCCCEEEcccccccCccCCcccccccccccCccCCcEEeccCCCCcc-cCCcchh-------ccccccceeeecC
Q 005040 31 TFGNLRHLSVLSLMMNNLTTESSSADQWSFLSSLTNCRNLANLALASNPLGG-ILPPLIG-------NFSASLQNIYAFE 102 (717)
Q Consensus 31 ~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~l~~l~~L~~L~L~~N~l~~-~~~~~~~-------~l~~~L~~L~l~~ 102 (717)
.+...++|++|++++|.+ .++.. +... |+.|+|++|.++. ..|..+. .+ ++|++|++++
T Consensus 38 ~~~~~~~L~~l~l~~n~l-~~p~~---------~~~~--L~~L~L~~n~l~~~~~~~~~~~~~~~~~~l-~~L~~L~L~~ 104 (312)
T 1wwl_A 38 LYGGGRSLEYLLKRVDTE-ADLGQ---------FTDI--IKSLSLKRLTVRAARIPSRILFGALRVLGI-SGLQELTLEN 104 (312)
T ss_dssp EEEEEEECTTHHHHCCTT-CCCHH---------HHHH--HHHCCCCEEEEEEEECBHHHHHHHHHHHTT-SCCCEEEEEE
T ss_pred EEccCCCceeEeeccccc-ccHHH---------HHHH--HhhcccccccccCCCcCHHHHHHHHHhcCc-CCccEEEccC
Confidence 356678899999999999 55432 2222 8899999999953 4454443 34 6799999999
Q ss_pred CcceecCCccc--cCCCCCcEEEccCCCCcccCCcccccc-----CCCCEEeccCCcccccCCccccCCCCCCEEeccCC
Q 005040 103 CKLGGSIPKEI--GNLRGLIVLSLGFNDLNGTIPTSIGTL-----QQLQGFYVPENNLQGYVPHDLCHLERLNILNLSGN 175 (717)
Q Consensus 103 n~l~~~~~~~~--~~l~~L~~L~L~~n~l~~~~~~~~~~l-----~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n 175 (717)
|++++.+|..+ ..+++|++|+|++|++++. |..+..+ ++|++|+|++|++++..+..|.++++|++|+|++|
T Consensus 105 n~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~-~~~~~~l~~~~~~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N 183 (312)
T 1wwl_A 105 LEVTGTAPPPLLEATGPDLNILNLRNVSWATR-DAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDN 183 (312)
T ss_dssp EBCBSCCCCCSSSCCSCCCSEEEEESCBCSSS-SSHHHHHHTTCCTTCCEEEEESCSCCCCCTTTCCCCSSCCEEECCSC
T ss_pred CcccchhHHHHHHhcCCCccEEEccCCCCcch-hHHHHHHHHhhcCCCcEEEeeCCCCccchHHHhccCCCCCEEECCCC
Confidence 99998888886 8999999999999999977 8888888 99999999999999998899999999999999999
Q ss_pred cCcccC--Cccc--cCCCCCCeEEecCccccCC---CChhhhcccCCCeEEccCCcCcccCC-ccccCCCCCCeEEccCC
Q 005040 176 KLSGAI--PQCL--ASLTSLRSLYLQSNKLSSS---LPSSLWSLEYILRINLSSNSLKGTLP-SNIQKLNVLIDLDLSRN 247 (717)
Q Consensus 176 ~l~~~~--~~~~--~~l~~L~~L~L~~N~l~~~---~~~~~~~l~~L~~L~l~~N~l~~~~~-~~~~~l~~L~~L~l~~N 247 (717)
++.+.. +..+ ..+++|++|+|++|++++. ....+..+++|++|+|++|.+++..| ..+..+++|+.|+|++|
T Consensus 184 ~l~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~Ls~N 263 (312)
T 1wwl_A 184 PELGERGLISALCPLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFT 263 (312)
T ss_dssp TTCHHHHHHHHSCTTSCTTCCEEECTTSCCCCHHHHHHHHHHTTCCCSEEECTTSCCCSSCCCSCCCCCTTCCEEECTTS
T ss_pred CcCcchHHHHHHHhccCCCCCEEECCCCcCcchHHHHHHHHhcCCCCCEEECCCCcCCcccchhhhhhcCCCCEEECCCC
Confidence 987542 3333 8899999999999999832 22445678999999999999998764 56778899999999999
Q ss_pred CCCCCCcccccCCcccccccccCccccCCCCccccccCccceEeccCCCCCCC
Q 005040 248 QLSSDIPSTIGTLKNLETLSLAGNQFQGPIPESVGNLISLESLDFSNNNLSGK 300 (717)
Q Consensus 248 ~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~~~ 300 (717)
.|+ .+|..+. ++|++|+|++|+|++. |. +..+++|++|+|++|++++.
T Consensus 264 ~l~-~ip~~~~--~~L~~L~Ls~N~l~~~-p~-~~~l~~L~~L~L~~N~l~~~ 311 (312)
T 1wwl_A 264 GLK-QVPKGLP--AKLSVLDLSYNRLDRN-PS-PDELPQVGNLSLKGNPFLDS 311 (312)
T ss_dssp CCS-SCCSSCC--SEEEEEECCSSCCCSC-CC-TTTSCEEEEEECTTCTTTCC
T ss_pred ccC-hhhhhcc--CCceEEECCCCCCCCC-hh-HhhCCCCCEEeccCCCCCCC
Confidence 999 5777666 8999999999999966 65 99999999999999999853
No 315
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.96 E-value=1.3e-29 Score=262.87 Aligned_cols=268 Identities=20% Similarity=0.180 Sum_probs=180.5
Q ss_pred CCcEEECCCCcceecCCcCCCCCCCCCEEEcccccccCccCCcccccccccccCccCCcEEeccCCCCcccCCcchhccc
Q 005040 13 KLIGLDLGLNSFSGHIPNTFGNLRHLSVLSLMMNNLTTESSSADQWSFLSSLTNCRNLANLALASNPLGGILPPLIGNFS 92 (717)
Q Consensus 13 ~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~l~ 92 (717)
+++.++++.+.+.......+..+++|++|+|++|+|+.+++. .|..+++|++|+|++|++++..+ +..+
T Consensus 11 ~l~i~~ls~~~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~--------~~~~l~~L~~L~Ls~n~l~~~~~--~~~l- 79 (317)
T 3o53_A 11 RYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAA--------DLAPFTKLELLNLSSNVLYETLD--LESL- 79 (317)
T ss_dssp EEEEESCCTTTHHHHHHHHHTTGGGCSEEECTTSCCCCCCHH--------HHTTCTTCCEEECTTSCCEEEEE--ETTC-
T ss_pred ceeEeeccccchhhhHHHHhccCCCCCEEECcCCccCcCCHH--------HhhCCCcCCEEECCCCcCCcchh--hhhc-
Confidence 455566666666655555566666777777777777765432 36677777777777777765443 5555
Q ss_pred cccceeeecCCcceecCCccccCCCCCcEEEccCCCCcccCCccccccCCCCEEeccCCcccccCCccccCCCCCCEEec
Q 005040 93 ASLQNIYAFECKLGGSIPKEIGNLRGLIVLSLGFNDLNGTIPTSIGTLQQLQGFYVPENNLQGYVPHDLCHLERLNILNL 172 (717)
Q Consensus 93 ~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L 172 (717)
++|++|++++|++++.. ..++|++|++++|++++..+. .+++|++|++++|++++..+..+..+++|++|+|
T Consensus 80 ~~L~~L~Ls~n~l~~l~-----~~~~L~~L~l~~n~l~~~~~~---~~~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~L 151 (317)
T 3o53_A 80 STLRTLDLNNNYVQELL-----VGPSIETLHAANNNISRVSCS---RGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDL 151 (317)
T ss_dssp TTCCEEECCSSEEEEEE-----ECTTCCEEECCSSCCSEEEEC---CCSSCEEEECCSSCCCSGGGBCTGGGSSEEEEEC
T ss_pred CCCCEEECcCCcccccc-----CCCCcCEEECCCCccCCcCcc---ccCCCCEEECCCCCCCCccchhhhccCCCCEEEC
Confidence 46777777777776432 236777777777777755433 3566777777777777766667777777777777
Q ss_pred cCCcCcccCCccc-cCCCCCCeEEecCccccCCCChhhhcccCCCeEEccCCcCcccCCccccCCCCCCeEEccCCCCCC
Q 005040 173 SGNKLSGAIPQCL-ASLTSLRSLYLQSNKLSSSLPSSLWSLEYILRINLSSNSLKGTLPSNIQKLNVLIDLDLSRNQLSS 251 (717)
Q Consensus 173 ~~n~l~~~~~~~~-~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~ 251 (717)
++|.+++..+..+ ..+++|++|+|++|.+++. + ....+++|++|+|++|+|++. |..+..+++|+.|++++|.+++
T Consensus 152 s~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~-~-~~~~l~~L~~L~Ls~N~l~~l-~~~~~~l~~L~~L~L~~N~l~~ 228 (317)
T 3o53_A 152 KLNEIDTVNFAELAASSDTLEHLNLQYNFIYDV-K-GQVVFAKLKTLDLSSNKLAFM-GPEFQSAAGVTWISLRNNKLVL 228 (317)
T ss_dssp TTSCCCEEEGGGGGGGTTTCCEEECTTSCCCEE-E-CCCCCTTCCEEECCSSCCCEE-CGGGGGGTTCSEEECTTSCCCE
T ss_pred CCCCCCcccHHHHhhccCcCCEEECCCCcCccc-c-cccccccCCEEECCCCcCCcc-hhhhcccCcccEEECcCCcccc
Confidence 7777776655555 3577777777777777744 2 233477777777777777743 4447777777777777777774
Q ss_pred CCcccccCCcccccccccCcccc-CCCCccccccCccceEeccC-CCCCCCCcc
Q 005040 252 DIPSTIGTLKNLETLSLAGNQFQ-GPIPESVGNLISLESLDFSN-NNLSGKIPK 303 (717)
Q Consensus 252 ~~~~~~~~l~~L~~L~l~~N~l~-~~~~~~~~~l~~L~~L~L~~-N~~~~~~~~ 303 (717)
+|..+..+++|+.|++++|++. +..+..+..+++|+.|++++ +.+.+..|.
T Consensus 229 -l~~~~~~l~~L~~L~l~~N~~~~~~~~~~~~~~~~L~~l~l~~~~~l~~~~~~ 281 (317)
T 3o53_A 229 -IEKALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQTVKKLTGQNEE 281 (317)
T ss_dssp -ECTTCCCCTTCCEEECTTCCCBHHHHHHHHHTCHHHHHHHHHHHHHHHSSSSC
T ss_pred -hhhHhhcCCCCCEEEccCCCccCcCHHHHHhccccceEEECCCchhccCCchh
Confidence 5666777777777777777777 56666777777777777774 344544443
No 316
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.95 E-value=1.7e-27 Score=266.44 Aligned_cols=257 Identities=28% Similarity=0.392 Sum_probs=217.6
Q ss_pred CCCCCccccCCCCCcEEECCCCcceecCCcCCCCCCCCCEEEcccccccCccCCcccccccccccCccCCcEEeccCCCC
Q 005040 1 MGTIPNSITNATKLIGLDLGLNSFSGHIPNTFGNLRHLSVLSLMMNNLTTESSSADQWSFLSSLTNCRNLANLALASNPL 80 (717)
Q Consensus 1 ~~~iP~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~l~~l~~L~~L~L~~N~l 80 (717)
+++||..+. ++|++|+|++|+|+. +|. .+++|++|+|++|+|+.++. .+++|++|+|++|++
T Consensus 52 L~~lp~~l~--~~L~~L~L~~N~l~~-lp~---~l~~L~~L~Ls~N~l~~lp~------------~l~~L~~L~Ls~N~l 113 (622)
T 3g06_A 52 LTTLPDCLP--AHITTLVIPDNNLTS-LPA---LPPELRTLEVSGNQLTSLPV------------LPPGLLELSIFSNPL 113 (622)
T ss_dssp CSCCCSCCC--TTCSEEEECSCCCSC-CCC---CCTTCCEEEECSCCCSCCCC------------CCTTCCEEEECSCCC
T ss_pred cCccChhhC--CCCcEEEecCCCCCC-CCC---cCCCCCEEEcCCCcCCcCCC------------CCCCCCEEECcCCcC
Confidence 468898887 899999999999995 554 57899999999999998763 578999999999999
Q ss_pred cccCCcchhccccccceeeecCCcceecCCccccCCCCCcEEEccCCCCcccCCccccccCCCCEEeccCCcccccCCcc
Q 005040 81 GGILPPLIGNFSASLQNIYAFECKLGGSIPKEIGNLRGLIVLSLGFNDLNGTIPTSIGTLQQLQGFYVPENNLQGYVPHD 160 (717)
Q Consensus 81 ~~~~~~~~~~l~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~ 160 (717)
++. |. ..++|++|++++|+++. +|.. +++|++|+|++|++++. |. .+++|+.|++++|.|+.+ |
T Consensus 114 ~~l-~~----~l~~L~~L~L~~N~l~~-lp~~---l~~L~~L~Ls~N~l~~l-~~---~~~~L~~L~L~~N~l~~l-~-- 177 (622)
T 3g06_A 114 THL-PA----LPSGLCKLWIFGNQLTS-LPVL---PPGLQELSVSDNQLASL-PA---LPSELCKLWAYNNQLTSL-P-- 177 (622)
T ss_dssp CCC-CC----CCTTCCEEECCSSCCSC-CCCC---CTTCCEEECCSSCCSCC-CC---CCTTCCEEECCSSCCSCC-C--
T ss_pred CCC-CC----CCCCcCEEECCCCCCCc-CCCC---CCCCCEEECcCCcCCCc-CC---ccCCCCEEECCCCCCCCC-c--
Confidence 964 43 33679999999999985 5543 48999999999999953 43 457899999999999964 4
Q ss_pred ccCCCCCCEEeccCCcCcccCCccccCCCCCCeEEecCccccCCCChhhhcccCCCeEEccCCcCcccCCccccCCCCCC
Q 005040 161 LCHLERLNILNLSGNKLSGAIPQCLASLTSLRSLYLQSNKLSSSLPSSLWSLEYILRINLSSNSLKGTLPSNIQKLNVLI 240 (717)
Q Consensus 161 ~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~ 240 (717)
..+++|+.|+|++|.|++ +|. .+++|+.|++++|.++. +|. .+++|+.|+|++|.|++ +| ..+++|+
T Consensus 178 -~~~~~L~~L~Ls~N~l~~-l~~---~~~~L~~L~L~~N~l~~-l~~---~~~~L~~L~Ls~N~L~~-lp---~~l~~L~ 244 (622)
T 3g06_A 178 -MLPSGLQELSVSDNQLAS-LPT---LPSELYKLWAYNNRLTS-LPA---LPSGLKELIVSGNRLTS-LP---VLPSELK 244 (622)
T ss_dssp -CCCTTCCEEECCSSCCSC-CCC---CCTTCCEEECCSSCCSS-CCC---CCTTCCEEECCSSCCSC-CC---CCCTTCC
T ss_pred -ccCCCCcEEECCCCCCCC-CCC---ccchhhEEECcCCcccc-cCC---CCCCCCEEEccCCccCc-CC---CCCCcCc
Confidence 557899999999999995 443 24899999999999994 454 35889999999999995 45 5668999
Q ss_pred eEEccCCCCCCCCcccccCCcccccccccCccccCCCCccccccCccceEeccCCCCCCCCcccccccc
Q 005040 241 DLDLSRNQLSSDIPSTIGTLKNLETLSLAGNQFQGPIPESVGNLISLESLDFSNNNLSGKIPKSLEALS 309 (717)
Q Consensus 241 ~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~~~~~~~~~~l~ 309 (717)
.|+|++|.|++ +|. .+++|+.|+|++|+|+ .+|..+.++++|+.|+|++|++++..|..+..++
T Consensus 245 ~L~Ls~N~L~~-lp~---~~~~L~~L~Ls~N~L~-~lp~~l~~l~~L~~L~L~~N~l~~~~~~~l~~L~ 308 (622)
T 3g06_A 245 ELMVSGNRLTS-LPM---LPSGLLSLSVYRNQLT-RLPESLIHLSSETTVNLEGNPLSERTLQALREIT 308 (622)
T ss_dssp EEECCSSCCSC-CCC---CCTTCCEEECCSSCCC-SCCGGGGGSCTTCEEECCSCCCCHHHHHHHHHHH
T ss_pred EEECCCCCCCc-CCc---ccccCcEEeCCCCCCC-cCCHHHhhccccCEEEecCCCCCCcCHHHHHhcc
Confidence 99999999996 554 6789999999999999 6788999999999999999999998888877665
No 317
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.95 E-value=8e-29 Score=271.84 Aligned_cols=234 Identities=19% Similarity=0.192 Sum_probs=117.7
Q ss_pred CCcEEeccCCCCcccCCcchhccccccceeeecCCcceecCCccccCCCCCcEEEccCCCCcccCCccccccCCCCEEec
Q 005040 69 NLANLALASNPLGGILPPLIGNFSASLQNIYAFECKLGGSIPKEIGNLRGLIVLSLGFNDLNGTIPTSIGTLQQLQGFYV 148 (717)
Q Consensus 69 ~L~~L~L~~N~l~~~~~~~~~~l~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l 148 (717)
+|++|+|++|.+++..|..|..+ ++|++|+|++|.+++..| |..+++|++|+|++|.|++.. ..++|++|++
T Consensus 35 ~L~~L~Ls~n~l~~~~~~~~~~l-~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~l~~l~-----~~~~L~~L~L 106 (487)
T 3oja_A 35 NVKELDLSGNPLSQISAADLAPF-TKLELLNLSSNVLYETLD--LESLSTLRTLDLNNNYVQELL-----VGPSIETLHA 106 (487)
T ss_dssp GCCEEECCSSCCCCCCGGGGTTC-TTCCEEECTTSCCEEEEE--CTTCTTCCEEECCSSEEEEEE-----ECTTCCEEEC
T ss_pred CccEEEeeCCcCCCCCHHHHhCC-CCCCEEEeeCCCCCCCcc--cccCCCCCEEEecCCcCCCCC-----CCCCcCEEEC
Confidence 55555555555554444444444 334444444444443333 555555555555555555322 1255555555
Q ss_pred cCCcccccCCccccCCCCCCEEeccCCcCcccCCccccCCCCCCeEEecCccccCCCChhhh-cccCCCeEEccCCcCcc
Q 005040 149 PENNLQGYVPHDLCHLERLNILNLSGNKLSGAIPQCLASLTSLRSLYLQSNKLSSSLPSSLW-SLEYILRINLSSNSLKG 227 (717)
Q Consensus 149 ~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~-~l~~L~~L~l~~N~l~~ 227 (717)
++|.|++..+. .+++|+.|+|++|.+++..|..|+.+++|+.|+|++|.+++..|..+. .+++|++|+|++|.|++
T Consensus 107 ~~N~l~~~~~~---~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~~l~~L~~L~Ls~N~l~~ 183 (487)
T 3oja_A 107 ANNNISRVSCS---RGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYD 183 (487)
T ss_dssp CSSCCCCEEEC---CCSSCEEEECCSSCCCSGGGBCGGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCCE
T ss_pred cCCcCCCCCcc---ccCCCCEEECCCCCCCCCCchhhcCCCCCCEEECCCCCCCCcChHHHhhhCCcccEEecCCCcccc
Confidence 55555544332 234555555555555555455555555555555555555554444443 45555555555555554
Q ss_pred cCCccccCCCCCCeEEccCCCCCCCCcccccCCcccccccccCccccCCCCccccccCccceEeccCCCCC-CCCccccc
Q 005040 228 TLPSNIQKLNVLIDLDLSRNQLSSDIPSTIGTLKNLETLSLAGNQFQGPIPESVGNLISLESLDFSNNNLS-GKIPKSLE 306 (717)
Q Consensus 228 ~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~-~~~~~~~~ 306 (717)
.. .+..+++|+.|+|++|.|++.+| .+..+++|+.|+|++|.+++ +|..+..+++|+.|+|++|++. +.+|..+.
T Consensus 184 ~~--~~~~l~~L~~L~Ls~N~l~~~~~-~~~~l~~L~~L~Ls~N~l~~-lp~~l~~l~~L~~L~l~~N~l~c~~~~~~~~ 259 (487)
T 3oja_A 184 VK--GQVVFAKLKTLDLSSNKLAFMGP-EFQSAAGVTWISLRNNKLVL-IEKALRFSQNLEHFDLRGNGFHCGTLRDFFS 259 (487)
T ss_dssp EE--CCCCCTTCCEEECCSSCCCEECG-GGGGGTTCSEEECTTSCCCE-ECTTCCCCTTCCEEECTTCCBCHHHHHHHHT
T ss_pred cc--ccccCCCCCEEECCCCCCCCCCH-hHcCCCCccEEEecCCcCcc-cchhhccCCCCCEEEcCCCCCcCcchHHHHH
Confidence 31 12235555555555555554322 25555555555555555552 3444555555555555555554 33444445
Q ss_pred ccccccEEEcc
Q 005040 307 ALSHLKQFNVS 317 (717)
Q Consensus 307 ~l~~L~~L~l~ 317 (717)
.++.|+.+++.
T Consensus 260 ~l~~L~~l~~~ 270 (487)
T 3oja_A 260 KNQRVQTVAKQ 270 (487)
T ss_dssp TCHHHHHHHHH
T ss_pred hCCCCcEEecc
Confidence 55555544443
No 318
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.95 E-value=6.4e-29 Score=272.62 Aligned_cols=234 Identities=20% Similarity=0.173 Sum_probs=144.3
Q ss_pred CCcEEECCCCcceecCCcCCCCCCCCCEEEcccccccCccCCcccccccccccCccCCcEEeccCCCCcccCCcchhccc
Q 005040 13 KLIGLDLGLNSFSGHIPNTFGNLRHLSVLSLMMNNLTTESSSADQWSFLSSLTNCRNLANLALASNPLGGILPPLIGNFS 92 (717)
Q Consensus 13 ~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~l~ 92 (717)
+|++|+|++|.|++..|..|.++++|++|+|++|.|+++++ |..+++|++|+|++|.+++..+.
T Consensus 35 ~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~----------l~~l~~L~~L~Ls~N~l~~l~~~------ 98 (487)
T 3oja_A 35 NVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD----------LESLSTLRTLDLNNNYVQELLVG------ 98 (487)
T ss_dssp GCCEEECCSSCCCCCCGGGGTTCTTCCEEECTTSCCEEEEE----------CTTCTTCCEEECCSSEEEEEEEC------
T ss_pred CccEEEeeCCcCCCCCHHHHhCCCCCCEEEeeCCCCCCCcc----------cccCCCCCEEEecCCcCCCCCCC------
Confidence 67777777777777666777777777777777777765432 56777777777777777644321
Q ss_pred cccceeeecCCcceecCCccccCCCCCcEEEccCCCCcccCCccccccCCCCEEeccCCcccccCCcccc-CCCCCCEEe
Q 005040 93 ASLQNIYAFECKLGGSIPKEIGNLRGLIVLSLGFNDLNGTIPTSIGTLQQLQGFYVPENNLQGYVPHDLC-HLERLNILN 171 (717)
Q Consensus 93 ~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~-~l~~L~~L~ 171 (717)
++|++|++++|.+.+..+. .+++|++|+|++|.+++..|..|+++++|++|+|++|.+++..|..+. .+++|++|+
T Consensus 99 ~~L~~L~L~~N~l~~~~~~---~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~~l~~L~~L~ 175 (487)
T 3oja_A 99 PSIETLHAANNNISRVSCS---RGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLN 175 (487)
T ss_dssp TTCCEEECCSSCCCCEEEC---CCSSCEEEECCSSCCCSGGGBCGGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEE
T ss_pred CCcCEEECcCCcCCCCCcc---ccCCCCEEECCCCCCCCCCchhhcCCCCCCEEECCCCCCCCcChHHHhhhCCcccEEe
Confidence 4566666666666654443 235666666666666666566666666666666666666665555554 566666666
Q ss_pred ccCCcCcccCCccccCCCCCCeEEecCccccCCCChhhhcccCCCeEEccCCcCcccCCccccCCCCCCeEEccCCCCC-
Q 005040 172 LSGNKLSGAIPQCLASLTSLRSLYLQSNKLSSSLPSSLWSLEYILRINLSSNSLKGTLPSNIQKLNVLIDLDLSRNQLS- 250 (717)
Q Consensus 172 L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~- 250 (717)
|++|.|++..+ +..+++|+.|+|++|.+++.. ..+..+++|+.|+|++|.|++ +|..+..+++|+.|++++|.+.
T Consensus 176 Ls~N~l~~~~~--~~~l~~L~~L~Ls~N~l~~~~-~~~~~l~~L~~L~Ls~N~l~~-lp~~l~~l~~L~~L~l~~N~l~c 251 (487)
T 3oja_A 176 LQYNFIYDVKG--QVVFAKLKTLDLSSNKLAFMG-PEFQSAAGVTWISLRNNKLVL-IEKALRFSQNLEHFDLRGNGFHC 251 (487)
T ss_dssp CTTSCCCEEEC--CCCCTTCCEEECCSSCCCEEC-GGGGGGTTCSEEECTTSCCCE-ECTTCCCCTTCCEEECTTCCBCH
T ss_pred cCCCccccccc--cccCCCCCEEECCCCCCCCCC-HhHcCCCCccEEEecCCcCcc-cchhhccCCCCCEEEcCCCCCcC
Confidence 66666664422 234566666666666666433 335566666666666666663 4445555666666666666655
Q ss_pred CCCcccccCCccccccccc
Q 005040 251 SDIPSTIGTLKNLETLSLA 269 (717)
Q Consensus 251 ~~~~~~~~~l~~L~~L~l~ 269 (717)
+.+|..+..++.|+.|+++
T Consensus 252 ~~~~~~~~~l~~L~~l~~~ 270 (487)
T 3oja_A 252 GTLRDFFSKNQRVQTVAKQ 270 (487)
T ss_dssp HHHHHHHTTCHHHHHHHHH
T ss_pred cchHHHHHhCCCCcEEecc
Confidence 3344455555555555554
No 319
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.95 E-value=2.4e-27 Score=240.87 Aligned_cols=210 Identities=23% Similarity=0.264 Sum_probs=142.9
Q ss_pred CCcEEEccCCCCcccCCccccccCCCCEEeccCCcccccCCccccCCCCCCEEeccCCcCcccCCccccCCCCCCeEEec
Q 005040 118 GLIVLSLGFNDLNGTIPTSIGTLQQLQGFYVPENNLQGYVPHDLCHLERLNILNLSGNKLSGAIPQCLASLTSLRSLYLQ 197 (717)
Q Consensus 118 ~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~ 197 (717)
+|++|+|++|.+++..+..|.++++|++|++++|++++..+..|.++++|++|+|++|.+++..+..|.++++|++|+++
T Consensus 29 ~l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~ 108 (276)
T 2z62_A 29 STKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAV 108 (276)
T ss_dssp TCCEEECTTCCCCEECTTTTTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECT
T ss_pred CccEEECCCCcccccCHhHhccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCccCccChhhhcCCccccEEECC
Confidence 55566666666655555555566666666666666665555556666666666666666665555566666666666666
Q ss_pred CccccCCCChhhhcccCCCeEEccCCcCccc-CCccccCCCCCCeEEccCCCCCCCCcccccCCcccc----cccccCcc
Q 005040 198 SNKLSSSLPSSLWSLEYILRINLSSNSLKGT-LPSNIQKLNVLIDLDLSRNQLSSDIPSTIGTLKNLE----TLSLAGNQ 272 (717)
Q Consensus 198 ~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~-~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~----~L~l~~N~ 272 (717)
+|.+++..+..+..+++|++|++++|.+++. +|..+..+++|+.|++++|.+++..+..+..+++|+ .|++++|+
T Consensus 109 ~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~l~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~l~l~L~ls~n~ 188 (276)
T 2z62_A 109 ETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNP 188 (276)
T ss_dssp TSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGGGGHHHHTCTTCCEEEECCSSC
T ss_pred CCCccccCchhcccCCCCCEEECcCCccceecCchhhccCCCCCEEECCCCCCCcCCHHHhhhhhhccccceeeecCCCc
Confidence 6666655554566666666667766666643 466777777777777777777766666666666666 77888888
Q ss_pred ccCCCCccccccCccceEeccCCCCCCCCcccccccccccEEEccCCccccccccc
Q 005040 273 FQGPIPESVGNLISLESLDFSNNNLSGKIPKSLEALSHLKQFNVSHNRLEGEIPVK 328 (717)
Q Consensus 273 l~~~~~~~~~~l~~L~~L~L~~N~~~~~~~~~~~~l~~L~~L~l~~N~l~~~~p~~ 328 (717)
+.+..+..+.. .+|+.|+|++|++++..+..+..+++|+.|+|++|++++.+|..
T Consensus 189 l~~~~~~~~~~-~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~c~c~~l 243 (276)
T 2z62_A 189 MNFIQPGAFKE-IRLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPRI 243 (276)
T ss_dssp CCEECTTSSCS-CCEEEEECCSSCCSCCCTTTTTTCCSCCEEECCSSCBCCCTTTT
T ss_pred ccccCccccCC-CcccEEECCCCceeecCHhHhcccccccEEEccCCcccccCCch
Confidence 88655555544 47888899988888777777888899999999999999887743
No 320
>4azs_A Methyltransferase WBDD; kinase; HET: AMP SAM; 2.15A {Escherichia coli} PDB: 4azt_A* 4azv_A* 4azw_A*
Probab=99.95 E-value=2.9e-29 Score=279.03 Aligned_cols=184 Identities=18% Similarity=0.087 Sum_probs=130.2
Q ss_pred ccccccEEEEEEEe-cCCCeEEEEEechh----------hHHHHHHHHHHHHHHHhc-CCCceeeEeeeeecCCeeEEEE
Q 005040 435 LGTGGFGSVYKGTL-SDGTNVAIKIFNLQ----------LERAFRSFDSECEILRNV-RHRNLLKILGSCSNLDFKALVL 502 (717)
Q Consensus 435 lg~G~~g~V~~~~~-~~~~~vavK~~~~~----------~~~~~~~~~~e~~~l~~l-~hpniv~~~~~~~~~~~~~lv~ 502 (717)
.+.|++|.+..++. --|+.||+|++.+. .....+.+.+|+++|+++ .|+||+++++++++.+..||||
T Consensus 242 ~~~~~~~~h~~~rr~~fg~~~~~K~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~~~~~~~i~~~~~~~ed~~~~yLVM 321 (569)
T 4azs_A 242 PYAGAGLAHKRSRRYFFGEDYVCKFFYYDMPHGILTAEESQRNKYELHNEIKFLTQPPAGFDAPAVLAHGENAQSGWLVM 321 (569)
T ss_dssp -C--------CCEEEEECSSEEEEEEESSCSTTCSCHHHHHHHHHHHHHHHHHHHSCCTTCCCCCEEEEEECSSEEEEEE
T ss_pred cccCCcccccccccccccceeEEEEEecccccccchhhhhHHHHHHHHHHHHHHHhcCCCCCeeEEEEEEEECCEEEEEE
Confidence 45566666655543 25888999998643 233456799999999999 7999999999999999999999
Q ss_pred EccCCCCHHHHHhhCCCCCCHHHHHHHHHHHHHHHHHHhhcCCCCCeEecCCCCCCeeeCCCCcEEEeeeccccccCCCC
Q 005040 503 EFMPNGSLEKWLYSHNYFLDILQRLNIMIDVGSALEYLHHCHSSAPIIHCDLKPTNILLDENMVAHVSDFGISKLLGEGE 582 (717)
Q Consensus 503 e~~~~g~L~~~l~~~~~~~~~~~~~~i~~~i~~~l~~LH~~~~~~~ivH~dlk~~Nill~~~~~~kl~Dfgl~~~~~~~~ 582 (717)
||++|++|.+++.+.+. ++.. +|+.||+.||+|+| +++||||||||+|||++.+|.+||+|||+++......
T Consensus 322 Eyv~G~~L~d~i~~~~~-l~~~---~I~~QIl~AL~ylH----~~GIIHRDIKPeNILL~~dg~vKL~DFGlAr~~~~~~ 393 (569)
T 4azs_A 322 EKLPGRLLSDMLAAGEE-IDRE---KILGSLLRSLAALE----KQGFWHDDVRPWNVMVDARQHARLIDFGSIVTTPQDC 393 (569)
T ss_dssp ECCCSEEHHHHHHTTCC-CCHH---HHHHHHHHHHHHHH----HTTCEESCCCGGGEEECTTSCEEECCCTTEESCC---
T ss_pred ecCCCCcHHHHHHhCCC-CCHH---HHHHHHHHHHHHHH----HCCceeccCchHhEEECCCCCEEEeecccCeeCCCCC
Confidence 99999999999987653 5554 48899999999999 6899999999999999999999999999998764432
Q ss_pred CceeeeccccCccccCCCccCCCCcCcccchhhHHHHHHHHHhCCCC
Q 005040 583 DSVIQTMTMATIGYMAPEYGSEGIVSTKCDVYSYGVLLMETFTEKKP 629 (717)
Q Consensus 583 ~~~~~~~~~~t~~y~aPE~~~~~~~~~~~Dvws~G~il~el~tg~~p 629 (717)
. .....+||++|||||++.+ .+..++|+||+|++++++.++..+
T Consensus 394 ~--~~~t~vGTp~YmAPE~l~g-~~~~~~d~~s~g~~~~~l~~~~~~ 437 (569)
T 4azs_A 394 S--WPTNLVQSFFVFVNELFAE-NKSWNGFWRSAPVHPFNLPQPWSN 437 (569)
T ss_dssp C--CSHHHHHHHHHHHHHHC------------------CCCCTTHHH
T ss_pred c--cccCceechhhccHHHhCC-CCCCcccccccccchhhhccccch
Confidence 2 2244679999999998875 467789999999998887665544
No 321
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.94 E-value=4e-26 Score=230.90 Aligned_cols=206 Identities=23% Similarity=0.303 Sum_probs=157.1
Q ss_pred CCcEEEccCCCCcccCCccccccCCCCEEeccCCcccccCCccccCCCCCCEEeccCCcCcccCCccccCCCCCCeEEec
Q 005040 118 GLIVLSLGFNDLNGTIPTSIGTLQQLQGFYVPENNLQGYVPHDLCHLERLNILNLSGNKLSGAIPQCLASLTSLRSLYLQ 197 (717)
Q Consensus 118 ~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~ 197 (717)
+++++++++|.++. +|..+. ++|++|+|++|+++...+..|.++++|++|+|++|.++...+..|..+++|++|+|+
T Consensus 17 ~~~~l~~~~~~l~~-ip~~~~--~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~ 93 (270)
T 2o6q_A 17 NKNSVDCSSKKLTA-IPSNIP--ADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWVT 93 (270)
T ss_dssp TTTEEECTTSCCSS-CCSCCC--TTCSEEECCSSCCSCCCTTSSSSCTTCCEEECCSSCCSCCCTTTTSSCTTCCEEECC
T ss_pred CCCEEEccCCCCCc-cCCCCC--CCCCEEECcCCCCCeeCHHHhcCCCCCCEEECCCCccCeeChhhhcCCCCCCEEECC
Confidence 45667777777763 444333 567777777777776666677777777777777777776555666777777777777
Q ss_pred CccccCCCChhhhcccCCCeEEccCCcCcccCCccccCCCCCCeEEccCCCCCCCCcccccCCcccccccccCccccCCC
Q 005040 198 SNKLSSSLPSSLWSLEYILRINLSSNSLKGTLPSNIQKLNVLIDLDLSRNQLSSDIPSTIGTLKNLETLSLAGNQFQGPI 277 (717)
Q Consensus 198 ~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~ 277 (717)
+|++++..+..|..+++|++|++++|.+++..+..|..+++|+.|+|++|.+++..+..|..+++|++|++++|++++..
T Consensus 94 ~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~ 173 (270)
T 2o6q_A 94 DNKLQALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNELQSLPKGVFDKLTSLKELRLYNNQLKRVP 173 (270)
T ss_dssp SSCCCCCCTTTTTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCC
T ss_pred CCcCCcCCHhHcccccCCCEEECCCCccCeeCHHHhCcCcCCCEEECCCCcCCccCHhHccCCcccceeEecCCcCcEeC
Confidence 77777666666777788888888888887777777788888888888888888766666788888888888888888776
Q ss_pred CccccccCccceEeccCCCCCCCCcccccccccccEEEccCCccccccc
Q 005040 278 PESVGNLISLESLDFSNNNLSGKIPKSLEALSHLKQFNVSHNRLEGEIP 326 (717)
Q Consensus 278 ~~~~~~l~~L~~L~L~~N~~~~~~~~~~~~l~~L~~L~l~~N~l~~~~p 326 (717)
+..|.++++|++|+|++|++++..+..+..+++|+.|+|++|++.+.++
T Consensus 174 ~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~c~ 222 (270)
T 2o6q_A 174 EGAFDKLTELKTLKLDNNQLKRVPEGAFDSLEKLKMLQLQENPWDCTCN 222 (270)
T ss_dssp TTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCSSS
T ss_pred hhHhccCCCcCEEECCCCcCCcCCHHHhccccCCCEEEecCCCeeCCCc
Confidence 7778888888888888888887767778888888899999998887765
No 322
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.94 E-value=2.2e-26 Score=233.74 Aligned_cols=223 Identities=20% Similarity=0.187 Sum_probs=174.3
Q ss_pred EeccCCCCcccCCcchhccccccceeeecCCcceecCCccccCCCCCcEEEccCCCCcccCCccccccCCCCEEeccCCc
Q 005040 73 LALASNPLGGILPPLIGNFSASLQNIYAFECKLGGSIPKEIGNLRGLIVLSLGFNDLNGTIPTSIGTLQQLQGFYVPENN 152 (717)
Q Consensus 73 L~L~~N~l~~~~~~~~~~l~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~ 152 (717)
++..+..+. .+|..+ +++|++|++++|++.+..+..|.++++|++|+|++|.++...+..|.++++|++|+|++|.
T Consensus 12 ~~c~~~~l~-~ip~~l---~~~l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~ 87 (276)
T 2z62_A 12 YQCMELNFY-KIPDNL---PFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNP 87 (276)
T ss_dssp EECTTSCCS-SCCSSS---CTTCCEEECTTCCCCEECTTTTTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCC
T ss_pred EEecCCCcc-ccCCCC---CCCccEEECCCCcccccCHhHhccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCc
Confidence 444444444 333322 2456777777777766666678888888888888888887777778888888888888888
Q ss_pred ccccCCccccCCCCCCEEeccCCcCcccCCccccCCCCCCeEEecCccccCC-CChhhhcccCCCeEEccCCcCcccCCc
Q 005040 153 LQGYVPHDLCHLERLNILNLSGNKLSGAIPQCLASLTSLRSLYLQSNKLSSS-LPSSLWSLEYILRINLSSNSLKGTLPS 231 (717)
Q Consensus 153 i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~-~~~~~~~l~~L~~L~l~~N~l~~~~~~ 231 (717)
+++..+..|.++++|++|++++|.+++..+..+..+++|++|+|++|++++. +|..+..+++|++|++++|++++..+.
T Consensus 88 l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~l~~~~~~l~~L~~L~Ls~N~l~~~~~~ 167 (276)
T 2z62_A 88 IQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCT 167 (276)
T ss_dssp CCEECTTTTTTCTTCCEEECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGG
T ss_pred cCccChhhhcCCccccEEECCCCCccccCchhcccCCCCCEEECcCCccceecCchhhccCCCCCEEECCCCCCCcCCHH
Confidence 8877777888888888888888888876666788888888888888888864 578888888888888888888877777
Q ss_pred cccCCCCCC----eEEccCCCCCCCCcccccCCcccccccccCccccCCCCccccccCccceEeccCCCCCCC
Q 005040 232 NIQKLNVLI----DLDLSRNQLSSDIPSTIGTLKNLETLSLAGNQFQGPIPESVGNLISLESLDFSNNNLSGK 300 (717)
Q Consensus 232 ~~~~l~~L~----~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~~~ 300 (717)
.+..+++|+ .|++++|.+++..+..+.. .+|++|++++|++++..+..+..+++|+.|+|++|++.+.
T Consensus 168 ~~~~l~~L~~l~l~L~ls~n~l~~~~~~~~~~-~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~c~ 239 (276)
T 2z62_A 168 DLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKE-IRLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCS 239 (276)
T ss_dssp GGHHHHTCTTCCEEEECCSSCCCEECTTSSCS-CCEEEEECCSSCCSCCCTTTTTTCCSCCEEECCSSCBCCC
T ss_pred HhhhhhhccccceeeecCCCcccccCccccCC-CcccEEECCCCceeecCHhHhcccccccEEEccCCccccc
Confidence 777777776 8899999998765555544 4899999999999977777788999999999999999854
No 323
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.94 E-value=2e-26 Score=233.25 Aligned_cols=208 Identities=22% Similarity=0.210 Sum_probs=101.6
Q ss_pred ccCccCCcEEeccCCCCcccCCcchhccccccceeeecCCcceecCCccccCCCCCcEEEccCCCCcccCCccccccCCC
Q 005040 64 LTNCRNLANLALASNPLGGILPPLIGNFSASLQNIYAFECKLGGSIPKEIGNLRGLIVLSLGFNDLNGTIPTSIGTLQQL 143 (717)
Q Consensus 64 l~~l~~L~~L~L~~N~l~~~~~~~~~~l~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L 143 (717)
+..+++|+.|++++|.++.. +.+..+ ++|++|++++|++.+. ..+..+++|++|+|++|.+++..+..|.++++|
T Consensus 37 ~~~l~~L~~L~l~~~~i~~~--~~l~~l-~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L 111 (272)
T 3rfs_A 37 QNELNSIDQIIANNSDIKSV--QGIQYL-PNVRYLALGGNKLHDI--SALKELTNLTYLILTGNQLQSLPNGVFDKLTNL 111 (272)
T ss_dssp HHHHTTCCEEECTTSCCCCC--TTGGGC-TTCCEEECTTSCCCCC--GGGTTCTTCCEEECTTSCCCCCCTTTTTTCTTC
T ss_pred cccccceeeeeeCCCCcccc--cccccC-CCCcEEECCCCCCCCc--hhhcCCCCCCEEECCCCccCccChhHhcCCcCC
Confidence 34555566666666555421 112222 2233333333332221 234455555555555555555444445555555
Q ss_pred CEEeccCCcccccCCccccCCCCCCEEeccCCcCcccCCccccCCCCCCeEEecCccccCCCChhhhcccCCCeEEccCC
Q 005040 144 QGFYVPENNLQGYVPHDLCHLERLNILNLSGNKLSGAIPQCLASLTSLRSLYLQSNKLSSSLPSSLWSLEYILRINLSSN 223 (717)
Q Consensus 144 ~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N 223 (717)
++|+|++|++++..+..|..+++|++|+|++|++++..+..|..+++|+.|+|++|++++..+..|..+++|++|++++|
T Consensus 112 ~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N 191 (272)
T 3rfs_A 112 KELVLVENQLQSLPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQSLPEGVFDKLTQLKDLRLYQN 191 (272)
T ss_dssp CEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred CEEECCCCcCCccCHHHhccCCCCCEEECCCCccCccCHHHhccCccCCEEECCCCCcCccCHHHhcCCccCCEEECCCC
Confidence 55555555555554444555555555555555555444444555555555555555555444444455555555555555
Q ss_pred cCcccCCccccCCCCCCeEEccCCCCCCCCcccccCCcccccccccCccccCCCCccccc
Q 005040 224 SLKGTLPSNIQKLNVLIDLDLSRNQLSSDIPSTIGTLKNLETLSLAGNQFQGPIPESVGN 283 (717)
Q Consensus 224 ~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~ 283 (717)
++++..+..+..+++|+.|++++|.+.+ .+++|+.|+++.|.+.|.+|..++.
T Consensus 192 ~l~~~~~~~~~~l~~L~~L~l~~N~~~~-------~~~~l~~l~~~~n~~~g~ip~~~~~ 244 (272)
T 3rfs_A 192 QLKSVPDGVFDRLTSLQYIWLHDNPWDC-------TCPGIRYLSEWINKHSGVVRNSAGS 244 (272)
T ss_dssp CCSCCCTTTTTTCTTCCEEECCSSCBCC-------CTTTTHHHHHHHHHTGGGBBCTTSC
T ss_pred cCCccCHHHHhCCcCCCEEEccCCCccc-------cCcHHHHHHHHHHhCCCcccCcccc
Confidence 5554444444555555555555554442 1334444444445444444444443
No 324
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.94 E-value=9.8e-26 Score=230.01 Aligned_cols=207 Identities=24% Similarity=0.248 Sum_probs=172.1
Q ss_pred ccCCCCCcEEEccCCCCcccCCccccccCCCCEEeccCCcccccCCccccCCCCCCEEeccCCcCcccCCccccCCCCCC
Q 005040 113 IGNLRGLIVLSLGFNDLNGTIPTSIGTLQQLQGFYVPENNLQGYVPHDLCHLERLNILNLSGNKLSGAIPQCLASLTSLR 192 (717)
Q Consensus 113 ~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~ 192 (717)
+.++++|+++++++|.++. +|..+. ++|+.|+|++|.+++..+..|.++++|++|+|++|.|++..+ .+.+++|+
T Consensus 6 ~~~l~~l~~l~~~~~~l~~-ip~~~~--~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~ 80 (290)
T 1p9a_G 6 VSKVASHLEVNCDKRNLTA-LPPDLP--KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQV--DGTLPVLG 80 (290)
T ss_dssp EECSTTCCEEECTTSCCSS-CCSCCC--TTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCEEEC--CSCCTTCC
T ss_pred ccccCCccEEECCCCCCCc-CCCCCC--CCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCCccCcccC--CCCCCcCC
Confidence 5677788888888888884 444443 678888888888888877888888888888888888886543 36788889
Q ss_pred eEEecCccccCCCChhhhcccCCCeEEccCCcCcccCCccccCCCCCCeEEccCCCCCCCCcccccCCcccccccccCcc
Q 005040 193 SLYLQSNKLSSSLPSSLWSLEYILRINLSSNSLKGTLPSNIQKLNVLIDLDLSRNQLSSDIPSTIGTLKNLETLSLAGNQ 272 (717)
Q Consensus 193 ~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~ 272 (717)
+|+|++|+++ .+|..+..+++|++|+|++|+|++..+..|.++++|+.|+|++|.+++..+..|..+++|+.|+|++|+
T Consensus 81 ~L~Ls~N~l~-~l~~~~~~l~~L~~L~l~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~ 159 (290)
T 1p9a_G 81 TLDLSHNQLQ-SLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNN 159 (290)
T ss_dssp EEECCSSCCS-SCCCCTTTCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSC
T ss_pred EEECCCCcCC-cCchhhccCCCCCEEECCCCcCcccCHHHHcCCCCCCEEECCCCCCCccChhhcccccCCCEEECCCCc
Confidence 9999999888 567778888899999999999987777888999999999999999988777778889999999999999
Q ss_pred ccCCCCccccccCccceEeccCCCCCCCCcccccccccccEEEccCCccccccc
Q 005040 273 FQGPIPESVGNLISLESLDFSNNNLSGKIPKSLEALSHLKQFNVSHNRLEGEIP 326 (717)
Q Consensus 273 l~~~~~~~~~~l~~L~~L~L~~N~~~~~~~~~~~~l~~L~~L~l~~N~l~~~~p 326 (717)
+++..+..|..+++|+.|+|++|+++ .+|..+..+++|+.|+|++|++.+.+.
T Consensus 160 l~~l~~~~~~~l~~L~~L~L~~N~l~-~ip~~~~~~~~L~~l~L~~Np~~C~c~ 212 (290)
T 1p9a_G 160 LTELPAGLLNGLENLDTLLLQENSLY-TIPKGFFGSHLLPFAFLHGNPWLCNCE 212 (290)
T ss_dssp CSCCCTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCCCSEEECCSCCBCCSGG
T ss_pred CCccCHHHhcCcCCCCEEECCCCcCC-ccChhhcccccCCeEEeCCCCccCcCc
Confidence 98766677888999999999999998 677777788899999999999987654
No 325
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.93 E-value=2.2e-25 Score=225.52 Aligned_cols=182 Identities=26% Similarity=0.286 Sum_probs=107.7
Q ss_pred CCcEEEccCCCCcccCCccccccCCCCEEeccCCcccccCCccccCCCCCCEEeccCCcCcccCCccccCCCCCCeEEec
Q 005040 118 GLIVLSLGFNDLNGTIPTSIGTLQQLQGFYVPENNLQGYVPHDLCHLERLNILNLSGNKLSGAIPQCLASLTSLRSLYLQ 197 (717)
Q Consensus 118 ~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~ 197 (717)
+|++|+|++|+++...+..|.++++|++|+|++|.++.+.+..|.++++|++|+|++|++++..+..|..+++|++|+|+
T Consensus 38 ~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~ 117 (270)
T 2o6q_A 38 DTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWVTDNKLQALPIGVFDQLVNLAELRLD 117 (270)
T ss_dssp TCSEEECCSSCCSCCCTTSSSSCTTCCEEECCSSCCSCCCTTTTSSCTTCCEEECCSSCCCCCCTTTTTTCSSCCEEECC
T ss_pred CCCEEECcCCCCCeeCHHHhcCCCCCCEEECCCCccCeeChhhhcCCCCCCEEECCCCcCCcCCHhHcccccCCCEEECC
Confidence 44555555555554444445555555555555555554444445555555555555555554444455555556666666
Q ss_pred CccccCCCChhhhcccCCCeEEccCCcCcccCCccccCCCCCCeEEccCCCCCCCCcccccCCcccccccccCccccCCC
Q 005040 198 SNKLSSSLPSSLWSLEYILRINLSSNSLKGTLPSNIQKLNVLIDLDLSRNQLSSDIPSTIGTLKNLETLSLAGNQFQGPI 277 (717)
Q Consensus 198 ~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~ 277 (717)
+|++++..+..|..+++|++|+|++|.|++..+..|..+++|+.|+|++|.+++..+..|..+++|++|+|++|++++..
T Consensus 118 ~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~ 197 (270)
T 2o6q_A 118 RNQLKSLPPRVFDSLTKLTYLSLGYNELQSLPKGVFDKLTSLKELRLYNNQLKRVPEGAFDKLTELKTLKLDNNQLKRVP 197 (270)
T ss_dssp SSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCCSCCC
T ss_pred CCccCeeCHHHhCcCcCCCEEECCCCcCCccCHhHccCCcccceeEecCCcCcEeChhHhccCCCcCEEECCCCcCCcCC
Confidence 66665555555556666666666666666555555666666666666666666655555666666777777777666555
Q ss_pred CccccccCccceEeccCCCCCC
Q 005040 278 PESVGNLISLESLDFSNNNLSG 299 (717)
Q Consensus 278 ~~~~~~l~~L~~L~L~~N~~~~ 299 (717)
+..+..+++|+.|+|++|++..
T Consensus 198 ~~~~~~l~~L~~L~l~~N~~~c 219 (270)
T 2o6q_A 198 EGAFDSLEKLKMLQLQENPWDC 219 (270)
T ss_dssp TTTTTTCTTCCEEECCSSCBCC
T ss_pred HHHhccccCCCEEEecCCCeeC
Confidence 5556667777777777777654
No 326
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.93 E-value=8.4e-26 Score=228.74 Aligned_cols=221 Identities=23% Similarity=0.230 Sum_probs=171.7
Q ss_pred cceeeecCCcceecCCccccCCCCCcEEEccCCCCcccCCccccccCCCCEEeccCCcccccCCccccCCCCCCEEeccC
Q 005040 95 LQNIYAFECKLGGSIPKEIGNLRGLIVLSLGFNDLNGTIPTSIGTLQQLQGFYVPENNLQGYVPHDLCHLERLNILNLSG 174 (717)
Q Consensus 95 L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~ 174 (717)
+..+++..+.+... ..+..+++|+.|++++|.++.. ..+..+++|++|++++|.+++. ..+..+++|++|+|++
T Consensus 21 l~~l~l~~~~~~~~--~~~~~l~~L~~L~l~~~~i~~~--~~l~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~L~~ 94 (272)
T 3rfs_A 21 TIKANLKKKSVTDA--VTQNELNSIDQIIANNSDIKSV--QGIQYLPNVRYLALGGNKLHDI--SALKELTNLTYLILTG 94 (272)
T ss_dssp HHHHHHTCSCTTSE--ECHHHHTTCCEEECTTSCCCCC--TTGGGCTTCCEEECTTSCCCCC--GGGTTCTTCCEEECTT
T ss_pred HHHHHhcCcccccc--cccccccceeeeeeCCCCcccc--cccccCCCCcEEECCCCCCCCc--hhhcCCCCCCEEECCC
Confidence 44445555544433 2355667788888888877632 3577788888888888888753 4677888888888888
Q ss_pred CcCcccCCccccCCCCCCeEEecCccccCCCChhhhcccCCCeEEccCCcCcccCCccccCCCCCCeEEccCCCCCCCCc
Q 005040 175 NKLSGAIPQCLASLTSLRSLYLQSNKLSSSLPSSLWSLEYILRINLSSNSLKGTLPSNIQKLNVLIDLDLSRNQLSSDIP 254 (717)
Q Consensus 175 n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~ 254 (717)
|.+++..+..|..+++|++|+|++|++++..+..|..+++|++|++++|.+++..+..|..+++|+.|++++|.+++..+
T Consensus 95 n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~ 174 (272)
T 3rfs_A 95 NQLQSLPNGVFDKLTNLKELVLVENQLQSLPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQSLPE 174 (272)
T ss_dssp SCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCT
T ss_pred CccCccChhHhcCCcCCCEEECCCCcCCccCHHHhccCCCCCEEECCCCccCccCHHHhccCccCCEEECCCCCcCccCH
Confidence 88887777777888888888888888887777777888888888888888887777778888888888888888887777
Q ss_pred ccccCCcccccccccCccccCCCCccccccCccceEeccCCCCCCCCcccccccccccEEEccCCccccccccc
Q 005040 255 STIGTLKNLETLSLAGNQFQGPIPESVGNLISLESLDFSNNNLSGKIPKSLEALSHLKQFNVSHNRLEGEIPVK 328 (717)
Q Consensus 255 ~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~~~~~~~~~~l~~L~~L~l~~N~l~~~~p~~ 328 (717)
..+..+++|++|++++|++++..+..+..+++|+.|+|++|++.+. +++|+.|++..|.++|.+|..
T Consensus 175 ~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~-------~~~l~~l~~~~n~~~g~ip~~ 241 (272)
T 3rfs_A 175 GVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWDCT-------CPGIRYLSEWINKHSGVVRNS 241 (272)
T ss_dssp TTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCC-------TTTTHHHHHHHHHTGGGBBCT
T ss_pred HHhcCCccCCEEECCCCcCCccCHHHHhCCcCCCEEEccCCCcccc-------CcHHHHHHHHHHhCCCcccCc
Confidence 7778888888888888888887777788888899999998888743 557888888999999888864
No 327
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.93 E-value=8.8e-25 Score=222.94 Aligned_cols=203 Identities=24% Similarity=0.221 Sum_probs=113.5
Q ss_pred ccCccCCcEEeccCCCCcccCCcchhccccccceeeecCCcceecCCccccCCCCCcEEEccCCCCcccCCccccccCCC
Q 005040 64 LTNCRNLANLALASNPLGGILPPLIGNFSASLQNIYAFECKLGGSIPKEIGNLRGLIVLSLGFNDLNGTIPTSIGTLQQL 143 (717)
Q Consensus 64 l~~l~~L~~L~L~~N~l~~~~~~~~~~l~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L 143 (717)
+.++++|+++++++|.++. +|..+. ++++.|++++|++++..+..|.++++|++|+|++|.|+...+. ..+++|
T Consensus 6 ~~~l~~l~~l~~~~~~l~~-ip~~~~---~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~--~~l~~L 79 (290)
T 1p9a_G 6 VSKVASHLEVNCDKRNLTA-LPPDLP---KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQVD--GTLPVL 79 (290)
T ss_dssp EECSTTCCEEECTTSCCSS-CCSCCC---TTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCEEECC--SCCTTC
T ss_pred ccccCCccEEECCCCCCCc-CCCCCC---CCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCCccCcccCC--CCCCcC
Confidence 5677888888888888873 343322 3455666666665555555555555555555555555533221 444444
Q ss_pred CEEeccCCcccccCCccccCCCCCCEEeccCCcCcccCCccccCCCCCCeEEecCccccCCCChhhhcccCCCeEEccCC
Q 005040 144 QGFYVPENNLQGYVPHDLCHLERLNILNLSGNKLSGAIPQCLASLTSLRSLYLQSNKLSSSLPSSLWSLEYILRINLSSN 223 (717)
Q Consensus 144 ~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N 223 (717)
++|+|++|+|+ .+|..+..+++|++|+|++|++++..+..|..+++|++|+|++|
T Consensus 80 ------------------------~~L~Ls~N~l~-~l~~~~~~l~~L~~L~l~~N~l~~l~~~~~~~l~~L~~L~L~~N 134 (290)
T 1p9a_G 80 ------------------------GTLDLSHNQLQ-SLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGN 134 (290)
T ss_dssp ------------------------CEEECCSSCCS-SCCCCTTTCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTS
T ss_pred ------------------------CEEECCCCcCC-cCchhhccCCCCCEEECCCCcCcccCHHHHcCCCCCCEEECCCC
Confidence 45555555444 33444444555555555555555444445555555555555555
Q ss_pred cCcccCCccccCCCCCCeEEccCCCCCCCCcccccCCcccccccccCccccCCCCccccccCccceEeccCCCCC
Q 005040 224 SLKGTLPSNIQKLNVLIDLDLSRNQLSSDIPSTIGTLKNLETLSLAGNQFQGPIPESVGNLISLESLDFSNNNLS 298 (717)
Q Consensus 224 ~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~ 298 (717)
+|++..+..|..+++|+.|+|++|+|++..+..|..+++|+.|+|++|+++ .+|..+..+.+|+.|+|++|++.
T Consensus 135 ~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~-~ip~~~~~~~~L~~l~L~~Np~~ 208 (290)
T 1p9a_G 135 ELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLY-TIPKGFFGSHLLPFAFLHGNPWL 208 (290)
T ss_dssp CCCCCCTTTTTTCTTCCEEECTTSCCSCCCTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCCCSEEECCSCCBC
T ss_pred CCCccChhhcccccCCCEEECCCCcCCccCHHHhcCcCCCCEEECCCCcCC-ccChhhcccccCCeEEeCCCCcc
Confidence 555444445555555555555555555544444555566666666666665 44555555556666666666665
No 328
>3en9_A Glycoprotease, O-sialoglycoprotein endopeptidase/protein kinase; endopeptidase activity, protein kinase activity; HET: TBR; 2.67A {Methanocaldococcus jannaschii} PDB: 3enh_A* 2vwb_A*
Probab=99.92 E-value=2.9e-26 Score=253.46 Aligned_cols=186 Identities=18% Similarity=0.189 Sum_probs=145.9
Q ss_pred CccccccccccEEEEEEEecCCCeEEEEEechhh--------HHHHHHHHHHHHHHHhcCCCceeeEeeeeecCCeeEEE
Q 005040 430 NECNLLGTGGFGSVYKGTLSDGTNVAIKIFNLQL--------ERAFRSFDSECEILRNVRHRNLLKILGSCSNLDFKALV 501 (717)
Q Consensus 430 ~~~~~lg~G~~g~V~~~~~~~~~~vavK~~~~~~--------~~~~~~~~~e~~~l~~l~hpniv~~~~~~~~~~~~~lv 501 (717)
...+.||+|+||.||+|.. .++.+|+|+..... ....+.+.+|++++++++||||+++..++.+.+..|+|
T Consensus 339 ~~~~~LG~G~fg~Vy~~~~-~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~E~~il~~l~h~nIv~~~~~~~~~~~~~lV 417 (540)
T 3en9_A 339 IPEHLIGKGAEADIKRDSY-LDFDVIIKERVKKGYRDERLDENIRKSRTAREARYLALVKDFGIPAPYIFDVDLDNKRIM 417 (540)
T ss_dssp ---------CCEEEEEEEC-SSCEEEEEEECCCTTSCHHHHHHHHHHHHHHHHHHHHHGGGGTCCCCCEEEEETTTTEEE
T ss_pred CCCCEEeeCCCEEEEEEEE-CCCeEEEEEEecccccchhhhhHHHHHHHHHHHHHHHhcCCCCcCceEEEEEeCCccEEE
Confidence 4457899999999999965 57888998753221 12245689999999999999999666655567777999
Q ss_pred EEccCCCCHHHHHhhCCCCCCHHHHHHHHHHHHHHHHHHhhcCCCCCeEecCCCCCCeeeCCCCcEEEeeeccccccCCC
Q 005040 502 LEFMPNGSLEKWLYSHNYFLDILQRLNIMIDVGSALEYLHHCHSSAPIIHCDLKPTNILLDENMVAHVSDFGISKLLGEG 581 (717)
Q Consensus 502 ~e~~~~g~L~~~l~~~~~~~~~~~~~~i~~~i~~~l~~LH~~~~~~~ivH~dlk~~Nill~~~~~~kl~Dfgl~~~~~~~ 581 (717)
|||+++++|.+++.. +..++.|+++||.||| +.+|+||||||+|||++. .+||+|||+++.....
T Consensus 418 mE~~~ggsL~~~l~~---------~~~i~~qi~~aL~~LH----~~gIiHrDiKp~NILl~~--~~kL~DFGla~~~~~~ 482 (540)
T 3en9_A 418 MSYINGKLAKDVIED---------NLDIAYKIGEIVGKLH----KNDVIHNDLTTSNFIFDK--DLYIIDFGLGKISNLD 482 (540)
T ss_dssp EECCCSEEHHHHSTT---------CTHHHHHHHHHHHHHH----HTTEECTTCCTTSEEESS--SEEECCCTTCEECCCH
T ss_pred EECCCCCCHHHHHHH---------HHHHHHHHHHHHHHHH----HCcCccCCCCHHHEEECC--eEEEEECccCEECCCc
Confidence 999999999999876 4579999999999999 678999999999999999 9999999999987543
Q ss_pred CCce-----eeeccccCccccCCCccCC--CCcCcccchhhHHHHHHHHHhCCCCCC
Q 005040 582 EDSV-----IQTMTMATIGYMAPEYGSE--GIVSTKCDVYSYGVLLMETFTEKKPTD 631 (717)
Q Consensus 582 ~~~~-----~~~~~~~t~~y~aPE~~~~--~~~~~~~Dvws~G~il~el~tg~~p~~ 631 (717)
.... ......||+.|||||++.. ..|+..+|+|+..+-..+-+.++.+|.
T Consensus 483 ~~~~~~~~~~~~~~~GT~~y~APEv~~~~~~~Y~~~~d~ws~vl~~l~~v~~r~rY~ 539 (540)
T 3en9_A 483 EDKAVDLIVFKKAVLSTHHEKFDEIWERFLEGYKSVYDRWEIILELMKDVERRARYV 539 (540)
T ss_dssp HHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHCTTHHHHHHHHHHHHTCSCCC
T ss_pred cccccchhhhhhhhcCCCCcCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhccccC
Confidence 2111 1234578999999998876 668889999999999999988888764
No 329
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.92 E-value=6e-25 Score=218.05 Aligned_cols=197 Identities=18% Similarity=0.162 Sum_probs=140.6
Q ss_pred CCCEEEcccccccCccCCcccccccccccCccCCcEEeccCCC-CcccCCcchhccccccceeeecC-CcceecCCcccc
Q 005040 37 HLSVLSLMMNNLTTESSSADQWSFLSSLTNCRNLANLALASNP-LGGILPPLIGNFSASLQNIYAFE-CKLGGSIPKEIG 114 (717)
Q Consensus 37 ~L~~L~L~~n~l~~~~~~~~~~~~~~~l~~l~~L~~L~L~~N~-l~~~~~~~~~~l~~~L~~L~l~~-n~l~~~~~~~~~ 114 (717)
+|++|+|++|+|+.+++.. |.++++|++|+|++|+ ++.+.+..|..+ ++|++|++++ |++....+..|.
T Consensus 32 ~l~~L~l~~n~l~~i~~~~--------~~~l~~L~~L~l~~n~~l~~i~~~~f~~l-~~L~~L~l~~~n~l~~i~~~~f~ 102 (239)
T 2xwt_C 32 STQTLKLIETHLRTIPSHA--------FSNLPNISRIYVSIDVTLQQLESHSFYNL-SKVTHIEIRNTRNLTYIDPDALK 102 (239)
T ss_dssp TCCEEEEESCCCSEECTTT--------TTTCTTCCEEEEECCSSCCEECTTTEESC-TTCCEEEEEEETTCCEECTTSEE
T ss_pred cccEEEEeCCcceEECHHH--------ccCCCCCcEEeCCCCCCcceeCHhHcCCC-cCCcEEECCCCCCeeEcCHHHhC
Confidence 5666666666666655433 5566666666666665 655555555555 4566666666 666666666777
Q ss_pred CCCCCcEEEccCCCCcccCCccccccCCCC---EEeccCC-cccccCCccccCCCCCC-EEeccCCcCcccCCccccCCC
Q 005040 115 NLRGLIVLSLGFNDLNGTIPTSIGTLQQLQ---GFYVPEN-NLQGYVPHDLCHLERLN-ILNLSGNKLSGAIPQCLASLT 189 (717)
Q Consensus 115 ~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~---~L~l~~n-~i~~~~~~~~~~l~~L~-~L~L~~n~l~~~~~~~~~~l~ 189 (717)
++++|++|+|++|.+++ +|. |..+++|+ +|++++| .++.+.+..|.++++|+ +|++++|+++.+.+..|.. +
T Consensus 103 ~l~~L~~L~l~~n~l~~-lp~-~~~l~~L~~L~~L~l~~N~~l~~i~~~~~~~l~~L~~~L~l~~n~l~~i~~~~~~~-~ 179 (239)
T 2xwt_C 103 ELPLLKFLGIFNTGLKM-FPD-LTKVYSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNGFTSVQGYAFNG-T 179 (239)
T ss_dssp CCTTCCEEEEEEECCCS-CCC-CTTCCBCCSEEEEEEESCTTCCEECTTTTTTTBSSEEEEECCSCCCCEECTTTTTT-C
T ss_pred CCCCCCEEeCCCCCCcc-ccc-cccccccccccEEECCCCcchhhcCcccccchhcceeEEEcCCCCCcccCHhhcCC-C
Confidence 88888888888888875 454 77777777 8888888 88877777788888888 8888888888544445555 7
Q ss_pred CCCeEEecCcc-ccCCCChhhhcc-cCCCeEEccCCcCcccCCccccCCCCCCeEEccCCC
Q 005040 190 SLRSLYLQSNK-LSSSLPSSLWSL-EYILRINLSSNSLKGTLPSNIQKLNVLIDLDLSRNQ 248 (717)
Q Consensus 190 ~L~~L~L~~N~-l~~~~~~~~~~l-~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~ 248 (717)
+|+.|+|++|+ +++..+..|..+ ++|+.|++++|+|++..+. .+++|+.|+++++.
T Consensus 180 ~L~~L~L~~n~~l~~i~~~~~~~l~~~L~~L~l~~N~l~~l~~~---~~~~L~~L~l~~~~ 237 (239)
T 2xwt_C 180 KLDAVYLNKNKYLTVIDKDAFGGVYSGPSLLDVSQTSVTALPSK---GLEHLKELIARNTW 237 (239)
T ss_dssp EEEEEECTTCTTCCEECTTTTTTCSBCCSEEECTTCCCCCCCCT---TCTTCSEEECTTC-
T ss_pred CCCEEEcCCCCCcccCCHHHhhccccCCcEEECCCCccccCChh---HhccCceeeccCcc
Confidence 88888888884 886667778888 8888888888888854333 56778888887763
No 330
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.92 E-value=1.1e-27 Score=255.91 Aligned_cols=253 Identities=15% Similarity=0.170 Sum_probs=161.7
Q ss_pred cCCcCCCCCCCCCEEEcccccccCccCCcccccccccccCccCCcEEeccCCCC---cccCCcchhccccccceeeecCC
Q 005040 27 HIPNTFGNLRHLSVLSLMMNNLTTESSSADQWSFLSSLTNCRNLANLALASNPL---GGILPPLIGNFSASLQNIYAFEC 103 (717)
Q Consensus 27 ~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~l~~l~~L~~L~L~~N~l---~~~~~~~~~~l~~~L~~L~l~~n 103 (717)
.++..+..+++|++|+|++|.|+...... +...|..+++|++|+|++|.+ ++..|..+..+
T Consensus 23 ~l~~~l~~~~~L~~L~L~~n~i~~~~~~~----l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l------------ 86 (386)
T 2ca6_A 23 SVFAVLLEDDSVKEIVLSGNTIGTEAARW----LSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLL------------ 86 (386)
T ss_dssp TTSHHHHHCSCCCEEECTTSEECHHHHHH----HHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHH------------
T ss_pred HHHHHHhcCCCccEEECCCCCCCHHHHHH----HHHHHHhCCCccEEeCcccccCccccchhHHHHHH------------
Confidence 45556667777888888888777643211 223366777788888877543 33344444332
Q ss_pred cceecCCccccCCCCCcEEEccCCCCcc----cCCccccccCCCCEEeccCCcccccCCccccC----C---------CC
Q 005040 104 KLGGSIPKEIGNLRGLIVLSLGFNDLNG----TIPTSIGTLQQLQGFYVPENNLQGYVPHDLCH----L---------ER 166 (717)
Q Consensus 104 ~l~~~~~~~~~~l~~L~~L~L~~n~l~~----~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~----l---------~~ 166 (717)
...+..+++|++|+|++|.++. .++..+..+++|++|+|++|.++...+..+.. + ++
T Consensus 87 ------~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~ 160 (386)
T 2ca6_A 87 ------LQALLKCPKLHTVRLSDNAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPP 160 (386)
T ss_dssp ------HHHHTTCTTCCEEECCSCCCCTTTHHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCC
T ss_pred ------HHHHhhCCcccEEECCCCcCCHHHHHHHHHHHHhCCCCCEEECcCCCCCHHHHHHHHHHHHHHhhhhhcccCCC
Confidence 2345677888888888888876 35667777888888888888876544433333 2 67
Q ss_pred CCEEeccCCcCcc-cCC---ccccCCCCCCeEEecCccccC-----CCChhhhcccCCCeEEccCCcCc----ccCCccc
Q 005040 167 LNILNLSGNKLSG-AIP---QCLASLTSLRSLYLQSNKLSS-----SLPSSLWSLEYILRINLSSNSLK----GTLPSNI 233 (717)
Q Consensus 167 L~~L~L~~n~l~~-~~~---~~~~~l~~L~~L~L~~N~l~~-----~~~~~~~~l~~L~~L~l~~N~l~----~~~~~~~ 233 (717)
|++|+|++|+++. ..+ ..+..+++|++|+|++|+++. ..+..+..+++|++|+|++|.|+ ..+|..+
T Consensus 161 L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~~~l 240 (386)
T 2ca6_A 161 LRSIICGRNRLENGSMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIAL 240 (386)
T ss_dssp CCEEECCSSCCTGGGHHHHHHHHHHCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHG
T ss_pred CcEEECCCCCCCcHHHHHHHHHHHhCCCcCEEECcCCCCCHhHHHHHHHHHhhcCCCccEEECcCCCCCcHHHHHHHHHH
Confidence 7788888877762 233 355667777777777777762 22335666777777777777774 3456666
Q ss_pred cCCCCCCeEEccCCCCCCC----Ccccc--cCCcccccccccCccccC----CCCccc-cccCccceEeccCCCCCCCC
Q 005040 234 QKLNVLIDLDLSRNQLSSD----IPSTI--GTLKNLETLSLAGNQFQG----PIPESV-GNLISLESLDFSNNNLSGKI 301 (717)
Q Consensus 234 ~~l~~L~~L~l~~N~l~~~----~~~~~--~~l~~L~~L~l~~N~l~~----~~~~~~-~~l~~L~~L~L~~N~~~~~~ 301 (717)
..+++|+.|+|++|.+++. ++..+ +.+++|+.|+|++|.+++ .+|..+ .++++|++|+|++|++++..
T Consensus 241 ~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~~L~~L~L~~n~i~~~g~~~l~~~l~~~l~~L~~L~l~~N~l~~~~ 319 (386)
T 2ca6_A 241 KSWPNLRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRFSEED 319 (386)
T ss_dssp GGCTTCCEEECTTCCCCHHHHHHHHHHHHTCSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEEECTTSBSCTTS
T ss_pred ccCCCcCEEECCCCCCchhhHHHHHHHHhhccCCCeEEEECcCCcCCHHHHHHHHHHHHhcCCCceEEEccCCcCCcch
Confidence 7777777777777777653 23444 226667777777777665 255554 44666777777777666554
No 331
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.92 E-value=1.9e-26 Score=243.85 Aligned_cols=259 Identities=21% Similarity=0.212 Sum_probs=153.0
Q ss_pred EEECCCCcceecCCcCCCCCCCCCEEEcccccccCccCCcccccccccccCcc-CCcEEeccCCCCcccCCcchhccccc
Q 005040 16 GLDLGLNSFSGHIPNTFGNLRHLSVLSLMMNNLTTESSSADQWSFLSSLTNCR-NLANLALASNPLGGILPPLIGNFSAS 94 (717)
Q Consensus 16 ~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~l~~l~-~L~~L~L~~N~l~~~~~~~~~~l~~~ 94 (717)
.++|+.|++++..|..+...++|++|+|++|.|++++... +...|..++ +|++|+|++|.+++..+..+..+
T Consensus 2 ~~~ls~n~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~----l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~--- 74 (362)
T 3goz_A 2 NYKLTLHPGSNPVEEFTSIPHGVTSLDLSLNNLYSISTVE----LIQAFANTPASVTSLNLSGNSLGFKNSDELVQI--- 74 (362)
T ss_dssp EEECCCCTTCCHHHHHHTSCTTCCEEECTTSCGGGSCHHH----HHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHH---
T ss_pred ccccccccchHHHHHHHhCCCCceEEEccCCCCChHHHHH----HHHHHHhCCCceeEEECcCCCCCHHHHHHHHHH---
Confidence 4688999999888887777777999999999988766411 224467777 88999999998887666666554
Q ss_pred cceeeecCCcceecCCccccC-CCCCcEEEccCCCCcccCCccccc----c-CCCCEEeccCCcccccCCcccc----C-
Q 005040 95 LQNIYAFECKLGGSIPKEIGN-LRGLIVLSLGFNDLNGTIPTSIGT----L-QQLQGFYVPENNLQGYVPHDLC----H- 163 (717)
Q Consensus 95 L~~L~l~~n~l~~~~~~~~~~-l~~L~~L~L~~n~l~~~~~~~~~~----l-~~L~~L~l~~n~i~~~~~~~~~----~- 163 (717)
+.. .++|++|+|++|.+++..+..+.. + ++|++|+|++|++++..+..+. .
T Consensus 75 ------------------l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~ 136 (362)
T 3goz_A 75 ------------------LAAIPANVTSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNL 136 (362)
T ss_dssp ------------------HHTSCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTS
T ss_pred ------------------HhccCCCccEEECcCCcCChHHHHHHHHHHHhCCCCccEEECcCCcCCcHHHHHHHHHHHhC
Confidence 111 256666666666666544443332 2 5666666666666655444332 2
Q ss_pred CCCCCEEeccCCcCcccCC----ccccCCC-CCCeEEecCccccCCCChhhh----cc-cCCCeEEccCCcCccc----C
Q 005040 164 LERLNILNLSGNKLSGAIP----QCLASLT-SLRSLYLQSNKLSSSLPSSLW----SL-EYILRINLSSNSLKGT----L 229 (717)
Q Consensus 164 l~~L~~L~L~~n~l~~~~~----~~~~~l~-~L~~L~L~~N~l~~~~~~~~~----~l-~~L~~L~l~~N~l~~~----~ 229 (717)
.++|++|+|++|.+++... ..+..++ +|++|+|++|++++..+..+. .+ ++|++|+|++|.|++. +
T Consensus 137 ~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~i~~~~~~~l 216 (362)
T 3goz_A 137 PASITSLNLRGNDLGIKSSDELIQILAAIPANVNSLNLRGNNLASKNCAELAKFLASIPASVTSLDLSANLLGLKSYAEL 216 (362)
T ss_dssp CTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGGSCHHHH
T ss_pred CCceeEEEccCCcCCHHHHHHHHHHHhcCCccccEeeecCCCCchhhHHHHHHHHHhCCCCCCEEECCCCCCChhHHHHH
Confidence 2466666666666664332 2233444 666666666666655544333 23 4666666666666642 2
Q ss_pred CccccC-CCCCCeEEccCCCCCCCCcc----cccCCcccccccccCccccCCCC-------ccccccCccceEeccCCCC
Q 005040 230 PSNIQK-LNVLIDLDLSRNQLSSDIPS----TIGTLKNLETLSLAGNQFQGPIP-------ESVGNLISLESLDFSNNNL 297 (717)
Q Consensus 230 ~~~~~~-l~~L~~L~l~~N~l~~~~~~----~~~~l~~L~~L~l~~N~l~~~~~-------~~~~~l~~L~~L~L~~N~~ 297 (717)
+..+.. .++|+.|+|++|.+++..+. .+..+++|++|++++|.+.+..+ ..+..+++|+.|+|++|++
T Consensus 217 ~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~~~~l~~L~~L~L~~n~l~~i~~~~~~~l~~~~~~l~~L~~LdL~~N~l 296 (362)
T 3goz_A 217 AYIFSSIPNHVVSLNLCLNCLHGPSLENLKLLKDSLKHLQTVYLDYDIVKNMSKEQCKALGAAFPNIQKIILVDKNGKEI 296 (362)
T ss_dssp HHHHHHSCTTCCEEECCSSCCCCCCHHHHHHTTTTTTTCSEEEEEHHHHTTCCHHHHHHHHTTSTTCCEEEEECTTSCBC
T ss_pred HHHHhcCCCCceEEECcCCCCCcHHHHHHHHHHhcCCCccEEEeccCCccccCHHHHHHHHHHhccCCceEEEecCCCcC
Confidence 333333 33666666666666654432 23445666666666666443222 2334444555555555555
Q ss_pred CC
Q 005040 298 SG 299 (717)
Q Consensus 298 ~~ 299 (717)
..
T Consensus 297 ~~ 298 (362)
T 3goz_A 297 HP 298 (362)
T ss_dssp CG
T ss_pred CC
Confidence 43
No 332
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.92 E-value=3.9e-26 Score=241.44 Aligned_cols=253 Identities=16% Similarity=0.180 Sum_probs=190.9
Q ss_pred EeccCCCCcccCCcchhccccccceeeecCCcceecCC----ccccCCC-CCcEEEccCCCCcccCCcccccc-----CC
Q 005040 73 LALASNPLGGILPPLIGNFSASLQNIYAFECKLGGSIP----KEIGNLR-GLIVLSLGFNDLNGTIPTSIGTL-----QQ 142 (717)
Q Consensus 73 L~L~~N~l~~~~~~~~~~l~~~L~~L~l~~n~l~~~~~----~~~~~l~-~L~~L~L~~n~l~~~~~~~~~~l-----~~ 142 (717)
++|++|.+++.+|..+. .+.+|++|+|++|.+++..+ ..|.+++ +|++|+|++|.+++..+..|..+ ++
T Consensus 3 ~~ls~n~~~~~~~~~~~-~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~ 81 (362)
T 3goz_A 3 YKLTLHPGSNPVEEFTS-IPHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPAN 81 (362)
T ss_dssp EECCCCTTCCHHHHHHT-SCTTCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTT
T ss_pred cccccccchHHHHHHHh-CCCCceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCCC
Confidence 34555555544433322 22345555555555554444 5677888 89999999999998878788776 99
Q ss_pred CCEEeccCCcccccCCcccc----CC-CCCCEEeccCCcCcccCCcccc----C-CCCCCeEEecCccccCCCCh----h
Q 005040 143 LQGFYVPENNLQGYVPHDLC----HL-ERLNILNLSGNKLSGAIPQCLA----S-LTSLRSLYLQSNKLSSSLPS----S 208 (717)
Q Consensus 143 L~~L~l~~n~i~~~~~~~~~----~l-~~L~~L~L~~n~l~~~~~~~~~----~-l~~L~~L~L~~N~l~~~~~~----~ 208 (717)
|++|+|++|++++..+..+. .+ ++|++|+|++|++++..+..+. . .++|++|+|++|.+++..+. .
T Consensus 82 L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~ 161 (362)
T 3goz_A 82 VTSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGNDLGIKSSDELIQI 161 (362)
T ss_dssp CCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCEEECTTSCGGGSCHHHHHHH
T ss_pred ccEEECcCCcCChHHHHHHHHHHHhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCceeEEEccCCcCCHHHHHHHHHH
Confidence 99999999999987776544 44 8999999999999976665443 3 36999999999999965443 4
Q ss_pred hhccc-CCCeEEccCCcCcccCCccc----cCC-CCCCeEEccCCCCCCCC----cccccC-CcccccccccCccccCCC
Q 005040 209 LWSLE-YILRINLSSNSLKGTLPSNI----QKL-NVLIDLDLSRNQLSSDI----PSTIGT-LKNLETLSLAGNQFQGPI 277 (717)
Q Consensus 209 ~~~l~-~L~~L~l~~N~l~~~~~~~~----~~l-~~L~~L~l~~N~l~~~~----~~~~~~-l~~L~~L~l~~N~l~~~~ 277 (717)
+..++ +|++|+|++|+|++..+..+ ..+ ++|+.|+|++|.|++.. +..+.. .++|++|+|++|++++..
T Consensus 162 l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~i~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~ 241 (362)
T 3goz_A 162 LAAIPANVNSLNLRGNNLASKNCAELAKFLASIPASVTSLDLSANLLGLKSYAELAYIFSSIPNHVVSLNLCLNCLHGPS 241 (362)
T ss_dssp HHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHHSCTTCCEEECCSSCCCCCC
T ss_pred HhcCCccccEeeecCCCCchhhHHHHHHHHHhCCCCCCEEECCCCCCChhHHHHHHHHHhcCCCCceEEECcCCCCCcHH
Confidence 45555 99999999999997766544 445 59999999999999743 334444 459999999999999766
Q ss_pred Cc----cccccCccceEeccCCCCCCCCc-------ccccccccccEEEccCCccccccc
Q 005040 278 PE----SVGNLISLESLDFSNNNLSGKIP-------KSLEALSHLKQFNVSHNRLEGEIP 326 (717)
Q Consensus 278 ~~----~~~~l~~L~~L~L~~N~~~~~~~-------~~~~~l~~L~~L~l~~N~l~~~~p 326 (717)
+. .+..+++|+.|+|++|.+.+..+ ..+..+++|+.|++++|++.+..+
T Consensus 242 ~~~l~~~~~~l~~L~~L~L~~n~l~~i~~~~~~~l~~~~~~l~~L~~LdL~~N~l~~~~~ 301 (362)
T 3goz_A 242 LENLKLLKDSLKHLQTVYLDYDIVKNMSKEQCKALGAAFPNIQKIILVDKNGKEIHPSHS 301 (362)
T ss_dssp HHHHHHTTTTTTTCSEEEEEHHHHTTCCHHHHHHHHTTSTTCCEEEEECTTSCBCCGGGC
T ss_pred HHHHHHHHhcCCCccEEEeccCCccccCHHHHHHHHHHhccCCceEEEecCCCcCCCcch
Confidence 53 34677999999999999664433 367788999999999999987644
No 333
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.92 E-value=1.8e-24 Score=214.50 Aligned_cols=196 Identities=19% Similarity=0.228 Sum_probs=114.0
Q ss_pred CCcEEEccCCCCcccCCccccccCCCCEEeccCCc-ccccCCccccCCCCCCEEeccC-CcCcccCCccccCCCCCCeEE
Q 005040 118 GLIVLSLGFNDLNGTIPTSIGTLQQLQGFYVPENN-LQGYVPHDLCHLERLNILNLSG-NKLSGAIPQCLASLTSLRSLY 195 (717)
Q Consensus 118 ~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~-i~~~~~~~~~~l~~L~~L~L~~-n~l~~~~~~~~~~l~~L~~L~ 195 (717)
+|++|+|++|+++++.+..|.++++|++|++++|+ ++.+.+..|.++++|++|+|++ |+++...+..|.++++|++|+
T Consensus 32 ~l~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~~~~f~~l~~L~~L~ 111 (239)
T 2xwt_C 32 STQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPLLKFLG 111 (239)
T ss_dssp TCCEEEEESCCCSEECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEECTTSEECCTTCCEEE
T ss_pred cccEEEEeCCcceEECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEcCHHHhCCCCCCCEEe
Confidence 45555555555554444455555555555555554 5544444555555555555555 555544445555556666666
Q ss_pred ecCccccCCCChhhhcccCCC---eEEccCC-cCcccCCccccCCCCCC-eEEccCCCCCCCCcccccCCcccccccccC
Q 005040 196 LQSNKLSSSLPSSLWSLEYIL---RINLSSN-SLKGTLPSNIQKLNVLI-DLDLSRNQLSSDIPSTIGTLKNLETLSLAG 270 (717)
Q Consensus 196 L~~N~l~~~~~~~~~~l~~L~---~L~l~~N-~l~~~~~~~~~~l~~L~-~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~ 270 (717)
+++|++++ +|. |..+++|+ +|++++| .+++..+..|.++++|+ .|++++|.++...+..|.. ++|++|++++
T Consensus 112 l~~n~l~~-lp~-~~~l~~L~~L~~L~l~~N~~l~~i~~~~~~~l~~L~~~L~l~~n~l~~i~~~~~~~-~~L~~L~L~~ 188 (239)
T 2xwt_C 112 IFNTGLKM-FPD-LTKVYSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNGFTSVQGYAFNG-TKLDAVYLNK 188 (239)
T ss_dssp EEEECCCS-CCC-CTTCCBCCSEEEEEEESCTTCCEECTTTTTTTBSSEEEEECCSCCCCEECTTTTTT-CEEEEEECTT
T ss_pred CCCCCCcc-ccc-cccccccccccEEECCCCcchhhcCcccccchhcceeEEEcCCCCCcccCHhhcCC-CCCCEEEcCC
Confidence 66666553 333 55555555 6666666 66655555566666666 6666666666433333444 6677777777
Q ss_pred cc-ccCCCCcccccc-CccceEeccCCCCCCCCcccccccccccEEEccCC
Q 005040 271 NQ-FQGPIPESVGNL-ISLESLDFSNNNLSGKIPKSLEALSHLKQFNVSHN 319 (717)
Q Consensus 271 N~-l~~~~~~~~~~l-~~L~~L~L~~N~~~~~~~~~~~~l~~L~~L~l~~N 319 (717)
|+ +++..+..|.++ ++|+.|+|++|++++..+. .+++|+.|+++++
T Consensus 189 n~~l~~i~~~~~~~l~~~L~~L~l~~N~l~~l~~~---~~~~L~~L~l~~~ 236 (239)
T 2xwt_C 189 NKYLTVIDKDAFGGVYSGPSLLDVSQTSVTALPSK---GLEHLKELIARNT 236 (239)
T ss_dssp CTTCCEECTTTTTTCSBCCSEEECTTCCCCCCCCT---TCTTCSEEECTTC
T ss_pred CCCcccCCHHHhhccccCCcEEECCCCccccCChh---HhccCceeeccCc
Confidence 74 665555666666 6777777777777643332 4556666666655
No 334
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.91 E-value=9.4e-27 Score=248.69 Aligned_cols=244 Identities=19% Similarity=0.247 Sum_probs=193.9
Q ss_pred ccccCccCCcEEeccCCCCcccCCcchhccccccceeeecCCcceecCCccccCCCCCcEEEccCCCC---cccCCccc-
Q 005040 62 SSLTNCRNLANLALASNPLGGILPPLIGNFSASLQNIYAFECKLGGSIPKEIGNLRGLIVLSLGFNDL---NGTIPTSI- 137 (717)
Q Consensus 62 ~~l~~l~~L~~L~L~~N~l~~~~~~~~~~l~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l---~~~~~~~~- 137 (717)
..+..+++|++|+|++|.++...+..+ +..+..+++|++|+|++|.+ ++.+|..+
T Consensus 26 ~~l~~~~~L~~L~L~~n~i~~~~~~~l---------------------~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~ 84 (386)
T 2ca6_A 26 AVLLEDDSVKEIVLSGNTIGTEAARWL---------------------SENIASKKDLEIAEFSDIFTGRVKDEIPEALR 84 (386)
T ss_dssp HHHHHCSCCCEEECTTSEECHHHHHHH---------------------HHTTTTCTTCCEEECCSCCTTSCGGGSHHHHH
T ss_pred HHHhcCCCccEEECCCCCCCHHHHHHH---------------------HHHHHhCCCccEEeCcccccCccccchhHHHH
Confidence 345566667777777776664433222 23477889999999998644 44455544
Q ss_pred ------cccCCCCEEeccCCcccc----cCCccccCCCCCCEEeccCCcCcccCCccccC----C---------CCCCeE
Q 005040 138 ------GTLQQLQGFYVPENNLQG----YVPHDLCHLERLNILNLSGNKLSGAIPQCLAS----L---------TSLRSL 194 (717)
Q Consensus 138 ------~~l~~L~~L~l~~n~i~~----~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~----l---------~~L~~L 194 (717)
..+++|++|+|++|.++. .++..+..+++|++|+|++|.++...+..+.. + ++|++|
T Consensus 85 ~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L 164 (386)
T 2ca6_A 85 LLLQALLKCPKLHTVRLSDNAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSI 164 (386)
T ss_dssp HHHHHHTTCTTCCEEECCSCCCCTTTHHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEE
T ss_pred HHHHHHhhCCcccEEECCCCcCCHHHHHHHHHHHHhCCCCCEEECcCCCCCHHHHHHHHHHHHHHhhhhhcccCCCCcEE
Confidence 789999999999999997 46668889999999999999997554444443 3 899999
Q ss_pred EecCcccc-CCCC---hhhhcccCCCeEEccCCcCcc-----cCCccccCCCCCCeEEccCCCCC----CCCcccccCCc
Q 005040 195 YLQSNKLS-SSLP---SSLWSLEYILRINLSSNSLKG-----TLPSNIQKLNVLIDLDLSRNQLS----SDIPSTIGTLK 261 (717)
Q Consensus 195 ~L~~N~l~-~~~~---~~~~~l~~L~~L~l~~N~l~~-----~~~~~~~~l~~L~~L~l~~N~l~----~~~~~~~~~l~ 261 (717)
+|++|+++ ...+ ..+..+++|++|+|++|.|+. ..+..+..+++|+.|+|++|.++ ..+|..+..++
T Consensus 165 ~L~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~~~l~~~~ 244 (386)
T 2ca6_A 165 ICGRNRLENGSMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWP 244 (386)
T ss_dssp ECCSSCCTGGGHHHHHHHHHHCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGGGCT
T ss_pred ECCCCCCCcHHHHHHHHHHHhCCCcCEEECcCCCCCHhHHHHHHHHHhhcCCCccEEECcCCCCCcHHHHHHHHHHccCC
Confidence 99999998 3334 467789999999999999983 34448889999999999999996 45777889999
Q ss_pred ccccccccCccccCC----CCccc--cccCccceEeccCCCCCC----CCcccc-cccccccEEEccCCccccccc
Q 005040 262 NLETLSLAGNQFQGP----IPESV--GNLISLESLDFSNNNLSG----KIPKSL-EALSHLKQFNVSHNRLEGEIP 326 (717)
Q Consensus 262 ~L~~L~l~~N~l~~~----~~~~~--~~l~~L~~L~L~~N~~~~----~~~~~~-~~l~~L~~L~l~~N~l~~~~p 326 (717)
+|++|+|++|++++. ++..+ +.+++|+.|+|++|.+++ .+|..+ .++++|+.|++++|++++..+
T Consensus 245 ~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~~L~~L~L~~n~i~~~g~~~l~~~l~~~l~~L~~L~l~~N~l~~~~~ 320 (386)
T 2ca6_A 245 NLRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRFSEEDD 320 (386)
T ss_dssp TCCEEECTTCCCCHHHHHHHHHHHHTCSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEEECTTSBSCTTSH
T ss_pred CcCEEECCCCCCchhhHHHHHHHHhhccCCCeEEEECcCCcCCHHHHHHHHHHHHhcCCCceEEEccCCcCCcchh
Confidence 999999999999865 45555 348999999999999997 477777 668999999999999997765
No 335
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.91 E-value=2.8e-24 Score=222.08 Aligned_cols=223 Identities=17% Similarity=0.219 Sum_probs=111.7
Q ss_pred CCcEEeccCCCCcccCCcchh---ccccccceeeecCCcceecCCccc--cCCCCCcEEEccCCCCcccCC----ccccc
Q 005040 69 NLANLALASNPLGGILPPLIG---NFSASLQNIYAFECKLGGSIPKEI--GNLRGLIVLSLGFNDLNGTIP----TSIGT 139 (717)
Q Consensus 69 ~L~~L~L~~N~l~~~~~~~~~---~l~~~L~~L~l~~n~l~~~~~~~~--~~l~~L~~L~L~~n~l~~~~~----~~~~~ 139 (717)
.++.|.+.++.++......+. .. ++|++|++++|++.+..|..+ ..+++|++|+|++|.+++..+ ..+..
T Consensus 65 ~l~~l~l~~~~~~~~~~~~~~~~~~~-~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~ 143 (310)
T 4glp_A 65 RVRRLTVGAAQVPAQLLVGALRVLAY-SRLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQWL 143 (310)
T ss_dssp CCCEEEECSCCCBHHHHHHHHHHHHH-SCCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTTB
T ss_pred ceeEEEEeCCcCCHHHHHHHHHhccc-CceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHhhh
Confidence 456666666665432111111 11 236666666666665666555 666666666666666664333 23345
Q ss_pred cCCCCEEeccCCcccccCCccccCCCCCCEEeccCCcCccc---C-CccccCCCCCCeEEecCccccCCCCh----hhhc
Q 005040 140 LQQLQGFYVPENNLQGYVPHDLCHLERLNILNLSGNKLSGA---I-PQCLASLTSLRSLYLQSNKLSSSLPS----SLWS 211 (717)
Q Consensus 140 l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~---~-~~~~~~l~~L~~L~L~~N~l~~~~~~----~~~~ 211 (717)
+++|++|+|++|++.+..+..|..+++|++|+|++|++.+. . +..+..+++|++|+|++|+++. ++. .+..
T Consensus 144 ~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~-l~~~~~~l~~~ 222 (310)
T 4glp_A 144 KPGLKVLSIAQAHSPAFSCEQVRAFPALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGMET-PTGVCAALAAA 222 (310)
T ss_dssp CSCCCEEEEECCSSCCCCTTSCCCCTTCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCCC-HHHHHHHHHHH
T ss_pred ccCCCEEEeeCCCcchhhHHHhccCCCCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCCc-hHHHHHHHHhc
Confidence 56666666666666655555666666666666666665431 1 1223455566666666666542 222 1344
Q ss_pred ccCCCeEEccCCcCcccCCccccCC---CCCCeEEccCCCCCCCCcccccCCcccccccccCccccCCCCccccccCccc
Q 005040 212 LEYILRINLSSNSLKGTLPSNIQKL---NVLIDLDLSRNQLSSDIPSTIGTLKNLETLSLAGNQFQGPIPESVGNLISLE 288 (717)
Q Consensus 212 l~~L~~L~l~~N~l~~~~~~~~~~l---~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~ 288 (717)
+++|++|+|++|.|++..|..+..+ ++|++|+|++|.|+. +|..+. ++|++|+|++|++++. |. +..+++|+
T Consensus 223 l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~L~~L~Ls~N~l~~-lp~~~~--~~L~~L~Ls~N~l~~~-~~-~~~l~~L~ 297 (310)
T 4glp_A 223 GVQPHSLDLSHNSLRATVNPSAPRCMWSSALNSLNLSFAGLEQ-VPKGLP--AKLRVLDLSSNRLNRA-PQ-PDELPEVD 297 (310)
T ss_dssp TCCCSSEECTTSCCCCCCCSCCSSCCCCTTCCCEECCSSCCCS-CCSCCC--SCCSCEECCSCCCCSC-CC-TTSCCCCS
T ss_pred CCCCCEEECCCCCCCccchhhHHhccCcCcCCEEECCCCCCCc-hhhhhc--CCCCEEECCCCcCCCC-ch-hhhCCCcc
Confidence 5555555555555554444444433 355555555555552 333332 3444444444444422 11 33444444
Q ss_pred eEeccCCCCC
Q 005040 289 SLDFSNNNLS 298 (717)
Q Consensus 289 ~L~L~~N~~~ 298 (717)
.|+|++|+++
T Consensus 298 ~L~L~~N~l~ 307 (310)
T 4glp_A 298 NLTLDGNPFL 307 (310)
T ss_dssp CEECSSTTTS
T ss_pred EEECcCCCCC
Confidence 4444444443
No 336
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.91 E-value=1.5e-24 Score=224.05 Aligned_cols=228 Identities=20% Similarity=0.187 Sum_probs=187.0
Q ss_pred CCCCEEEcccccccCccCCcccccccccccCccCCcEEeccCCCCcccCCcch--hccccccceeeecCCcceecCC---
Q 005040 36 RHLSVLSLMMNNLTTESSSADQWSFLSSLTNCRNLANLALASNPLGGILPPLI--GNFSASLQNIYAFECKLGGSIP--- 110 (717)
Q Consensus 36 ~~L~~L~L~~n~l~~~~~~~~~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~--~~l~~~L~~L~l~~n~l~~~~~--- 110 (717)
..++.|.+.++.++..... ....+..+++|++|+|++|.+++..|..+ ..+ ++|++|++++|++.+..+
T Consensus 64 ~~l~~l~l~~~~~~~~~~~-----~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~-~~L~~L~Ls~n~i~~~~~~~~ 137 (310)
T 4glp_A 64 LRVRRLTVGAAQVPAQLLV-----GALRVLAYSRLKELTLEDLKITGTMPPLPLEATG-LALSSLRLRNVSWATGRSWLA 137 (310)
T ss_dssp CCCCEEEECSCCCBHHHHH-----HHHHHHHHSCCCEEEEESCCCBSCCCCCSSSCCC-BCCSSCEEESCCCSSTTSSHH
T ss_pred cceeEEEEeCCcCCHHHHH-----HHHHhcccCceeEEEeeCCEeccchhhhhhhccC-CCCCEEEeecccccchhhhhH
Confidence 3578888888877642210 01113355779999999999998888887 555 689999999999997555
Q ss_pred -ccccCCCCCcEEEccCCCCcccCCccccccCCCCEEeccCCccccc---C-CccccCCCCCCEEeccCCcCcccCCc--
Q 005040 111 -KEIGNLRGLIVLSLGFNDLNGTIPTSIGTLQQLQGFYVPENNLQGY---V-PHDLCHLERLNILNLSGNKLSGAIPQ-- 183 (717)
Q Consensus 111 -~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~i~~~---~-~~~~~~l~~L~~L~L~~n~l~~~~~~-- 183 (717)
..+..+++|++|+|++|.+++..+..|.++++|++|+|++|++.+. . +..+..+++|++|+|++|+++. .+.
T Consensus 138 ~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~-l~~~~ 216 (310)
T 4glp_A 138 ELQQWLKPGLKVLSIAQAHSPAFSCEQVRAFPALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGMET-PTGVC 216 (310)
T ss_dssp HHHTTBCSCCCEEEEECCSSCCCCTTSCCCCTTCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCCC-HHHHH
T ss_pred HHHhhhccCCCEEEeeCCCcchhhHHHhccCCCCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCCc-hHHHH
Confidence 4456799999999999999988889999999999999999998642 2 2335788999999999999973 333
Q ss_pred --cccCCCCCCeEEecCccccCCCChhhhcc---cCCCeEEccCCcCcccCCccccCCCCCCeEEccCCCCCCCCccccc
Q 005040 184 --CLASLTSLRSLYLQSNKLSSSLPSSLWSL---EYILRINLSSNSLKGTLPSNIQKLNVLIDLDLSRNQLSSDIPSTIG 258 (717)
Q Consensus 184 --~~~~l~~L~~L~L~~N~l~~~~~~~~~~l---~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~ 258 (717)
.++.+++|++|+|++|++++..|..+..+ ++|++|+|++|+|+ .+|..+. ++|+.|+|++|.|++. |. +.
T Consensus 217 ~~l~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~L~~L~Ls~N~l~-~lp~~~~--~~L~~L~Ls~N~l~~~-~~-~~ 291 (310)
T 4glp_A 217 AALAAAGVQPHSLDLSHNSLRATVNPSAPRCMWSSALNSLNLSFAGLE-QVPKGLP--AKLRVLDLSSNRLNRA-PQ-PD 291 (310)
T ss_dssp HHHHHHTCCCSSEECTTSCCCCCCCSCCSSCCCCTTCCCEECCSSCCC-SCCSCCC--SCCSCEECCSCCCCSC-CC-TT
T ss_pred HHHHhcCCCCCEEECCCCCCCccchhhHHhccCcCcCCEEECCCCCCC-chhhhhc--CCCCEEECCCCcCCCC-ch-hh
Confidence 35788999999999999998878777776 69999999999999 6677664 7999999999999974 44 68
Q ss_pred CCcccccccccCccccC
Q 005040 259 TLKNLETLSLAGNQFQG 275 (717)
Q Consensus 259 ~l~~L~~L~l~~N~l~~ 275 (717)
.+++|+.|++++|+++.
T Consensus 292 ~l~~L~~L~L~~N~l~~ 308 (310)
T 4glp_A 292 ELPEVDNLTLDGNPFLV 308 (310)
T ss_dssp SCCCCSCEECSSTTTSC
T ss_pred hCCCccEEECcCCCCCC
Confidence 89999999999999974
No 337
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.91 E-value=3.2e-25 Score=232.24 Aligned_cols=234 Identities=18% Similarity=0.197 Sum_probs=149.0
Q ss_pred cCCcEEeccCCCCcccCCcchhccccccceeeecCCcceec-CCccccCCCCCcEEEccCCCCcccCCccccccCCCCEE
Q 005040 68 RNLANLALASNPLGGILPPLIGNFSASLQNIYAFECKLGGS-IPKEIGNLRGLIVLSLGFNDLNGTIPTSIGTLQQLQGF 146 (717)
Q Consensus 68 ~~L~~L~L~~N~l~~~~~~~~~~l~~~L~~L~l~~n~l~~~-~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L 146 (717)
++++.|++++|.+.+..+.. ..+ ++|++|++++|.+.+. ++..+..+++|++|+|++|.+++..+..++.+++|++|
T Consensus 70 ~~l~~L~l~~n~l~~~~~~~-~~~-~~L~~L~L~~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L 147 (336)
T 2ast_B 70 QGVIAFRCPRSFMDQPLAEH-FSP-FRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRL 147 (336)
T ss_dssp TTCSEEECTTCEECSCCCSC-CCC-BCCCEEECTTCEECHHHHHHHHTTBCCCSEEECTTCBCCHHHHHHHTTCTTCSEE
T ss_pred ccceEEEcCCccccccchhh-ccC-CCCCEEEccCCCcCHHHHHHHHhhCCCCCEEeCcCcccCHHHHHHHhcCCCCCEE
Confidence 44555555555554433332 222 3455555555555433 45556667777777777777776666677777777777
Q ss_pred eccCC-ccccc-CCccccCCCCCCEEeccCC-cCccc-CCccccCCC-CCCeEEecCc--ccc-CCCChhhhcccCCCeE
Q 005040 147 YVPEN-NLQGY-VPHDLCHLERLNILNLSGN-KLSGA-IPQCLASLT-SLRSLYLQSN--KLS-SSLPSSLWSLEYILRI 218 (717)
Q Consensus 147 ~l~~n-~i~~~-~~~~~~~l~~L~~L~L~~n-~l~~~-~~~~~~~l~-~L~~L~L~~N--~l~-~~~~~~~~~l~~L~~L 218 (717)
+|++| .+++. .+..+.++++|++|++++| .+++. .+..+..++ +|++|+|++| .++ +.++..+..+++|++|
T Consensus 148 ~L~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~~L~~L~l~~~~~~~~~~~l~~~~~~~~~L~~L 227 (336)
T 2ast_B 148 NLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHL 227 (336)
T ss_dssp ECTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHHHHHHSCTTCCEEECCSCGGGSCHHHHHHHHHHCTTCSEE
T ss_pred ECCCCCCCCHHHHHHHHhcCCCCCEEcCCCCCCcChHHHHHHHHhcccCCCEEEeCCCcccCCHHHHHHHHhhCCCCCEE
Confidence 77777 56542 4445667777777777777 77643 355567777 7777777777 343 3445566677788888
Q ss_pred EccCCc-CcccCCccccCCCCCCeEEccCCC-CCCCCcccccCCcccccccccCccccCCCCcccccc-CccceEeccCC
Q 005040 219 NLSSNS-LKGTLPSNIQKLNVLIDLDLSRNQ-LSSDIPSTIGTLKNLETLSLAGNQFQGPIPESVGNL-ISLESLDFSNN 295 (717)
Q Consensus 219 ~l~~N~-l~~~~~~~~~~l~~L~~L~l~~N~-l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l-~~L~~L~L~~N 295 (717)
++++|. +++..+..+..+++|+.|++++|. +.......+..+++|++|++++| +.. ..+..+ .+|..|++++|
T Consensus 228 ~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~-i~~---~~~~~l~~~l~~L~l~~n 303 (336)
T 2ast_B 228 DLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLLELGEIPTLKTLQVFGI-VPD---GTLQLLKEALPHLQINCS 303 (336)
T ss_dssp ECTTCTTCCGGGGGGGGGCTTCCEEECTTCTTCCGGGGGGGGGCTTCCEEECTTS-SCT---TCHHHHHHHSTTSEESCC
T ss_pred eCCCCCcCCHHHHHHHhCCCCCCEeeCCCCCCCCHHHHHHHhcCCCCCEEeccCc-cCH---HHHHHHHhhCcceEEecc
Confidence 888877 665666677777888888888874 33222225677788888888877 332 233333 23666777888
Q ss_pred CCCCCCcccccc
Q 005040 296 NLSGKIPKSLEA 307 (717)
Q Consensus 296 ~~~~~~~~~~~~ 307 (717)
++++..|..+..
T Consensus 304 ~l~~~~~~~~~~ 315 (336)
T 2ast_B 304 HFTTIARPTIGN 315 (336)
T ss_dssp CSCCTTCSSCSS
T ss_pred cCccccCCcccc
Confidence 888777776554
No 338
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.91 E-value=3.6e-25 Score=231.80 Aligned_cols=253 Identities=19% Similarity=0.208 Sum_probs=207.9
Q ss_pred cCCcEEeccCCCCcccCCcchhcc-ccccceeeecCCcceecCCccccCCCCCcEEEccCCCCccc-CCccccccCCCCE
Q 005040 68 RNLANLALASNPLGGILPPLIGNF-SASLQNIYAFECKLGGSIPKEIGNLRGLIVLSLGFNDLNGT-IPTSIGTLQQLQG 145 (717)
Q Consensus 68 ~~L~~L~L~~N~l~~~~~~~~~~l-~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~-~~~~~~~l~~L~~ 145 (717)
..++.|++++|.+. +..+..+ .++++.|++++|.+.+..+. +..+++|++|+|++|.+++. .+..+..+++|++
T Consensus 47 ~~~~~l~l~~~~~~---~~~~~~~~~~~l~~L~l~~n~l~~~~~~-~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~L~~ 122 (336)
T 2ast_B 47 SLWQTLDLTGKNLH---PDVTGRLLSQGVIAFRCPRSFMDQPLAE-HFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQN 122 (336)
T ss_dssp TTSSEEECTTCBCC---HHHHHHHHHTTCSEEECTTCEECSCCCS-CCCCBCCCEEECTTCEECHHHHHHHHTTBCCCSE
T ss_pred hhheeeccccccCC---HHHHHhhhhccceEEEcCCccccccchh-hccCCCCCEEEccCCCcCHHHHHHHHhhCCCCCE
Confidence 34889999999887 3444443 25699999999999977665 66799999999999999865 7778899999999
Q ss_pred EeccCCcccccCCccccCCCCCCEEeccCC-cCccc-CCccccCCCCCCeEEecCc-cccCC-CChhhhccc-CCCeEEc
Q 005040 146 FYVPENNLQGYVPHDLCHLERLNILNLSGN-KLSGA-IPQCLASLTSLRSLYLQSN-KLSSS-LPSSLWSLE-YILRINL 220 (717)
Q Consensus 146 L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n-~l~~~-~~~~~~~l~~L~~L~L~~N-~l~~~-~~~~~~~l~-~L~~L~l 220 (717)
|+|++|.+++..+..+..+++|++|+|++| .+++. .+..+..+++|++|+|++| .+++. ++..+..++ +|++|++
T Consensus 123 L~L~~~~l~~~~~~~l~~~~~L~~L~L~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~~L~~L~l 202 (336)
T 2ast_B 123 LSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNL 202 (336)
T ss_dssp EECTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHHHHHHSCTTCCEEEC
T ss_pred EeCcCcccCHHHHHHHhcCCCCCEEECCCCCCCCHHHHHHHHhcCCCCCEEcCCCCCCcChHHHHHHHHhcccCCCEEEe
Confidence 999999999888888999999999999999 68753 5666888999999999999 88854 567788999 9999999
Q ss_pred cCC--cCc-ccCCccccCCCCCCeEEccCCC-CCCCCcccccCCcccccccccCcc-ccCCCCccccccCccceEeccCC
Q 005040 221 SSN--SLK-GTLPSNIQKLNVLIDLDLSRNQ-LSSDIPSTIGTLKNLETLSLAGNQ-FQGPIPESVGNLISLESLDFSNN 295 (717)
Q Consensus 221 ~~N--~l~-~~~~~~~~~l~~L~~L~l~~N~-l~~~~~~~~~~l~~L~~L~l~~N~-l~~~~~~~~~~l~~L~~L~L~~N 295 (717)
++| .++ +.++..+..+++|+.|++++|. +++..+..+..+++|++|++++|. +.......++++++|+.|+|++|
T Consensus 203 ~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~ 282 (336)
T 2ast_B 203 SGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLLELGEIPTLKTLQVFGI 282 (336)
T ss_dssp CSCGGGSCHHHHHHHHHHCTTCSEEECTTCTTCCGGGGGGGGGCTTCCEEECTTCTTCCGGGGGGGGGCTTCCEEECTTS
T ss_pred CCCcccCCHHHHHHHHhhCCCCCEEeCCCCCcCCHHHHHHHhCCCCCCEeeCCCCCCCCHHHHHHHhcCCCCCEEeccCc
Confidence 999 455 3566778889999999999999 777778889999999999999995 33333336888999999999999
Q ss_pred CCCCCCccccccc-ccccEEEccCCccccccccc
Q 005040 296 NLSGKIPKSLEAL-SHLKQFNVSHNRLEGEIPVK 328 (717)
Q Consensus 296 ~~~~~~~~~~~~l-~~L~~L~l~~N~l~~~~p~~ 328 (717)
+. ...+..+ ..++.|++++|++++..|..
T Consensus 283 -i~---~~~~~~l~~~l~~L~l~~n~l~~~~~~~ 312 (336)
T 2ast_B 283 -VP---DGTLQLLKEALPHLQINCSHFTTIARPT 312 (336)
T ss_dssp -SC---TTCHHHHHHHSTTSEESCCCSCCTTCSS
T ss_pred -cC---HHHHHHHHhhCcceEEecccCccccCCc
Confidence 43 2344444 34777889999999887754
No 339
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.90 E-value=9.1e-24 Score=217.65 Aligned_cols=192 Identities=26% Similarity=0.376 Sum_probs=97.9
Q ss_pred CCCCcEEEccCCCCcccCCccccccCCCCEEeccCCcccccCCccccCCCCCCEEeccCCcCcccCCccccCCCCCCeEE
Q 005040 116 LRGLIVLSLGFNDLNGTIPTSIGTLQQLQGFYVPENNLQGYVPHDLCHLERLNILNLSGNKLSGAIPQCLASLTSLRSLY 195 (717)
Q Consensus 116 l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ 195 (717)
+++|++|++++|.++. ++ .+..+++|++|+|++|.+++..+ +..+++|++|+|++|++++. ..+..+++|++|+
T Consensus 40 l~~L~~L~l~~~~i~~-l~-~~~~l~~L~~L~L~~n~i~~~~~--~~~l~~L~~L~L~~n~l~~~--~~~~~l~~L~~L~ 113 (308)
T 1h6u_A 40 LDGITTLSAFGTGVTT-IE-GVQYLNNLIGLELKDNQITDLAP--LKNLTKITELELSGNPLKNV--SAIAGLQSIKTLD 113 (308)
T ss_dssp HHTCCEEECTTSCCCC-CT-TGGGCTTCCEEECCSSCCCCCGG--GTTCCSCCEEECCSCCCSCC--GGGTTCTTCCEEE
T ss_pred cCCcCEEEeeCCCccC-ch-hhhccCCCCEEEccCCcCCCChh--HccCCCCCEEEccCCcCCCc--hhhcCCCCCCEEE
Confidence 4444555555554442 22 34445555555555555543322 45555555555555555432 1345555555555
Q ss_pred ecCccccCCCChhhhcccCCCeEEccCCcCcccCCccccCCCCCCeEEccCCCCCCCCcccccCCcccccccccCccccC
Q 005040 196 LQSNKLSSSLPSSLWSLEYILRINLSSNSLKGTLPSNIQKLNVLIDLDLSRNQLSSDIPSTIGTLKNLETLSLAGNQFQG 275 (717)
Q Consensus 196 L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~ 275 (717)
|++|++++. + .+..+++|++|++++|.+++..+ +..+++|+.|++++|.+++..+ +..+++|+.|++++|++++
T Consensus 114 l~~n~l~~~-~-~l~~l~~L~~L~l~~n~l~~~~~--l~~l~~L~~L~l~~n~l~~~~~--l~~l~~L~~L~l~~n~l~~ 187 (308)
T 1h6u_A 114 LTSTQITDV-T-PLAGLSNLQVLYLDLNQITNISP--LAGLTNLQYLSIGNAQVSDLTP--LANLSKLTTLKADDNKISD 187 (308)
T ss_dssp CTTSCCCCC-G-GGTTCTTCCEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCC
T ss_pred CCCCCCCCc-h-hhcCCCCCCEEECCCCccCcCcc--ccCCCCccEEEccCCcCCCChh--hcCCCCCCEEECCCCccCc
Confidence 555555532 2 24555555555555555553322 5555555555555555554222 5555555555555555553
Q ss_pred CCCccccccCccceEeccCCCCCCCCcccccccccccEEEccCCcccc
Q 005040 276 PIPESVGNLISLESLDFSNNNLSGKIPKSLEALSHLKQFNVSHNRLEG 323 (717)
Q Consensus 276 ~~~~~~~~l~~L~~L~L~~N~~~~~~~~~~~~l~~L~~L~l~~N~l~~ 323 (717)
..+ +..+++|++|+|++|++++.. .+..+++|+.|++++|++++
T Consensus 188 ~~~--l~~l~~L~~L~L~~N~l~~~~--~l~~l~~L~~L~l~~N~i~~ 231 (308)
T 1h6u_A 188 ISP--LASLPNLIEVHLKNNQISDVS--PLANTSNLFIVTLTNQTITN 231 (308)
T ss_dssp CGG--GGGCTTCCEEECTTSCCCBCG--GGTTCTTCCEEEEEEEEEEC
T ss_pred Chh--hcCCCCCCEEEccCCccCccc--cccCCCCCCEEEccCCeeec
Confidence 322 555566666666666665433 25556666666666666654
No 340
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.90 E-value=2.9e-23 Score=207.45 Aligned_cols=180 Identities=24% Similarity=0.288 Sum_probs=94.0
Q ss_pred CCcEEEccCCCCcccCCccccccCCCCEEeccCCcccccCCccccCCCCCCEEeccCCcCcccCCccccCCCCCCeEEec
Q 005040 118 GLIVLSLGFNDLNGTIPTSIGTLQQLQGFYVPENNLQGYVPHDLCHLERLNILNLSGNKLSGAIPQCLASLTSLRSLYLQ 197 (717)
Q Consensus 118 ~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~ 197 (717)
..++++++++.++ .+|..+. ++|+.|+|++|.+++..+..|.++++|++|+|++|+|++..+..|..+++|++|+|+
T Consensus 15 ~~~~l~~~~~~l~-~~p~~~~--~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~ 91 (251)
T 3m19_A 15 GKKEVDCQGKSLD-SVPSGIP--ADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLA 91 (251)
T ss_dssp GGTEEECTTCCCS-SCCSCCC--TTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECT
T ss_pred CCeEEecCCCCcc-ccCCCCC--CCCCEEEccCCCcCccCHhHhcCcccCCEEECCCCcCCccCHhHhccCCcCCEEECC
Confidence 3455666666665 3333332 355555555555555555555555555555555555554444445555555555555
Q ss_pred CccccCCCChhhhcccCCCeEEccCCcCcccCCccccCCCCCCeEEccCCCCCCCCcccccCCcccccccccCccccCCC
Q 005040 198 SNKLSSSLPSSLWSLEYILRINLSSNSLKGTLPSNIQKLNVLIDLDLSRNQLSSDIPSTIGTLKNLETLSLAGNQFQGPI 277 (717)
Q Consensus 198 ~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~ 277 (717)
+|++++..+.. |..+++|++|+|++|.|++..+..|..+++|++|+|++|++++..
T Consensus 92 ~n~l~~~~~~~------------------------~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~ 147 (251)
T 3m19_A 92 NNQLASLPLGV------------------------FDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQSIP 147 (251)
T ss_dssp TSCCCCCCTTT------------------------TTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCC
T ss_pred CCcccccChhH------------------------hcccCCCCEEEcCCCcCCCcChhHhccCCcccEEECcCCcCCccC
Confidence 55555444444 444445555555555554444444445555555555555555444
Q ss_pred CccccccCccceEeccCCCCCCCCcccccccccccEEEccCCccccc
Q 005040 278 PESVGNLISLESLDFSNNNLSGKIPKSLEALSHLKQFNVSHNRLEGE 324 (717)
Q Consensus 278 ~~~~~~l~~L~~L~L~~N~~~~~~~~~~~~l~~L~~L~l~~N~l~~~ 324 (717)
+..|..+++|++|+|++|++++..+..+..+++|+.|+|++|++++.
T Consensus 148 ~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~ 194 (251)
T 3m19_A 148 AGAFDKLTNLQTLSLSTNQLQSVPHGAFDRLGKLQTITLFGNQFDCS 194 (251)
T ss_dssp TTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCCBCTT
T ss_pred HHHcCcCcCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCceeCC
Confidence 44455555555555555555554445555555555555555555554
No 341
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.90 E-value=1.5e-23 Score=216.04 Aligned_cols=189 Identities=23% Similarity=0.379 Sum_probs=108.3
Q ss_pred cceeeecCCcceecCCccccCCCCCcEEEccCCCCcccCCccccccCCCCEEeccCCcccccCCccccCCCCCCEEeccC
Q 005040 95 LQNIYAFECKLGGSIPKEIGNLRGLIVLSLGFNDLNGTIPTSIGTLQQLQGFYVPENNLQGYVPHDLCHLERLNILNLSG 174 (717)
Q Consensus 95 L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~ 174 (717)
|++|++++|++.. ++ .+..+++|++|+|++|.+++..+ +..+++|++|+|++|.+++. ..+..+++|++|+|++
T Consensus 43 L~~L~l~~~~i~~-l~-~~~~l~~L~~L~L~~n~i~~~~~--~~~l~~L~~L~L~~n~l~~~--~~~~~l~~L~~L~l~~ 116 (308)
T 1h6u_A 43 ITTLSAFGTGVTT-IE-GVQYLNNLIGLELKDNQITDLAP--LKNLTKITELELSGNPLKNV--SAIAGLQSIKTLDLTS 116 (308)
T ss_dssp CCEEECTTSCCCC-CT-TGGGCTTCCEEECCSSCCCCCGG--GTTCCSCCEEECCSCCCSCC--GGGTTCTTCCEEECTT
T ss_pred cCEEEeeCCCccC-ch-hhhccCCCCEEEccCCcCCCChh--HccCCCCCEEEccCCcCCCc--hhhcCCCCCCEEECCC
Confidence 4444444444432 22 34555566666666666554332 55566666666666665543 2455666666666666
Q ss_pred CcCcccCCccccCCCCCCeEEecCccccCCCChhhhcccCCCeEEccCCcCcccCCccccCCCCCCeEEccCCCCCCCCc
Q 005040 175 NKLSGAIPQCLASLTSLRSLYLQSNKLSSSLPSSLWSLEYILRINLSSNSLKGTLPSNIQKLNVLIDLDLSRNQLSSDIP 254 (717)
Q Consensus 175 n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~ 254 (717)
|++++. + .+..+++|++|+|++|++++..+ +..+++|+.|++++|.+++..+ +..+++|+.|++++|.+++..+
T Consensus 117 n~l~~~-~-~l~~l~~L~~L~l~~n~l~~~~~--l~~l~~L~~L~l~~n~l~~~~~--l~~l~~L~~L~l~~n~l~~~~~ 190 (308)
T 1h6u_A 117 TQITDV-T-PLAGLSNLQVLYLDLNQITNISP--LAGLTNLQYLSIGNAQVSDLTP--LANLSKLTTLKADDNKISDISP 190 (308)
T ss_dssp SCCCCC-G-GGTTCTTCCEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCCCGG
T ss_pred CCCCCc-h-hhcCCCCCCEEECCCCccCcCcc--ccCCCCccEEEccCCcCCCChh--hcCCCCCCEEECCCCccCcChh
Confidence 666543 2 25666666666666666664322 5566666666666666664322 6666666666666666665332
Q ss_pred ccccCCcccccccccCccccCCCCccccccCccceEeccCCCCCC
Q 005040 255 STIGTLKNLETLSLAGNQFQGPIPESVGNLISLESLDFSNNNLSG 299 (717)
Q Consensus 255 ~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~~ 299 (717)
+..+++|++|++++|++.+.. .+..+++|+.|+|++|++++
T Consensus 191 --l~~l~~L~~L~L~~N~l~~~~--~l~~l~~L~~L~l~~N~i~~ 231 (308)
T 1h6u_A 191 --LASLPNLIEVHLKNNQISDVS--PLANTSNLFIVTLTNQTITN 231 (308)
T ss_dssp --GGGCTTCCEEECTTSCCCBCG--GGTTCTTCCEEEEEEEEEEC
T ss_pred --hcCCCCCCEEEccCCccCccc--cccCCCCCCEEEccCCeeec
Confidence 566666666666666666433 25666667777777776653
No 342
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.90 E-value=4.4e-23 Score=206.06 Aligned_cols=180 Identities=27% Similarity=0.296 Sum_probs=152.5
Q ss_pred cccceeeecCCcceecCCccccCCCCCcEEEccCCCCcccCCccccccCCCCEEeccCCcccccCCccccCCCCCCEEec
Q 005040 93 ASLQNIYAFECKLGGSIPKEIGNLRGLIVLSLGFNDLNGTIPTSIGTLQQLQGFYVPENNLQGYVPHDLCHLERLNILNL 172 (717)
Q Consensus 93 ~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L 172 (717)
.+.++++++++.+. .+|..+. ++|++|+|++|.+++..+..|.++++|++|+|++|.|++..+..|.++++|++|+|
T Consensus 14 ~~~~~l~~~~~~l~-~~p~~~~--~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 90 (251)
T 3m19_A 14 EGKKEVDCQGKSLD-SVPSGIP--ADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGL 90 (251)
T ss_dssp GGGTEEECTTCCCS-SCCSCCC--TTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEEC
T ss_pred CCCeEEecCCCCcc-ccCCCCC--CCCCEEEccCCCcCccCHhHhcCcccCCEEECCCCcCCccCHhHhccCCcCCEEEC
Confidence 45788999999998 5676665 69999999999999988889999999999999999999999989999999999999
Q ss_pred cCCcCcccCCccccCCCCCCeEEecCccccCCCChhhhcccCCCeEEccCCcCcccCCccccCCCCCCeEEccCCCCCCC
Q 005040 173 SGNKLSGAIPQCLASLTSLRSLYLQSNKLSSSLPSSLWSLEYILRINLSSNSLKGTLPSNIQKLNVLIDLDLSRNQLSSD 252 (717)
Q Consensus 173 ~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~ 252 (717)
++|++++..+..|..+++|++|+|++|+|++..+..|..+++|+.|+|++|+|++..+..|..+++|+.|+|++|.+++.
T Consensus 91 ~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~ 170 (251)
T 3m19_A 91 ANNQLASLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLSTNQLQSV 170 (251)
T ss_dssp TTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCC
T ss_pred CCCcccccChhHhcccCCCCEEEcCCCcCCCcChhHhccCCcccEEECcCCcCCccCHHHcCcCcCCCEEECCCCcCCcc
Confidence 99999988888899999999999999999977777778888888888888888866666777777777777777777766
Q ss_pred CcccccCCcccccccccCccccC
Q 005040 253 IPSTIGTLKNLETLSLAGNQFQG 275 (717)
Q Consensus 253 ~~~~~~~l~~L~~L~l~~N~l~~ 275 (717)
.+..|..+++|+.|++++|++..
T Consensus 171 ~~~~~~~l~~L~~L~l~~N~~~c 193 (251)
T 3m19_A 171 PHGAFDRLGKLQTITLFGNQFDC 193 (251)
T ss_dssp CTTTTTTCTTCCEEECCSCCBCT
T ss_pred CHHHHhCCCCCCEEEeeCCceeC
Confidence 66666666777777777776653
No 343
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.90 E-value=1.9e-23 Score=219.56 Aligned_cols=241 Identities=16% Similarity=0.135 Sum_probs=166.8
Q ss_pred cEEECCCCcceecCCcCCCCCCCCCEEEcccccccCccCCcccccccccccCccCCcEEeccCCCCcccCC-cchhcccc
Q 005040 15 IGLDLGLNSFSGHIPNTFGNLRHLSVLSLMMNNLTTESSSADQWSFLSSLTNCRNLANLALASNPLGGILP-PLIGNFSA 93 (717)
Q Consensus 15 ~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~l~~l~~L~~L~L~~N~l~~~~~-~~~~~l~~ 93 (717)
++++.++++++ .+|..+ .+++++|+|++|+|+.++.++ |.++++|++|+|++|++.+.++ ..|.+++.
T Consensus 12 ~~v~C~~~~Lt-~iP~~l--~~~l~~L~Ls~N~i~~i~~~~--------f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~ 80 (350)
T 4ay9_X 12 RVFLCQESKVT-EIPSDL--PRNAIELRFVLTKLRVIQKGA--------FSGFGDLEKIEISQNDVLEVIEADVFSNLPK 80 (350)
T ss_dssp TEEEEESTTCC-SCCTTC--CTTCSEEEEESCCCSEECTTS--------STTCTTCCEEEEECCTTCCEECTTSBCSCTT
T ss_pred CEEEecCCCCC-ccCcCc--CCCCCEEEccCCcCCCcCHHH--------HcCCCCCCEEECcCCCCCCccChhHhhcchh
Confidence 56888999998 567666 368999999999999888655 8899999999999999865444 45566644
Q ss_pred ccceeeecCCcceecCCccccCCCCCcEEEccCCCCcccCCccccccCCCCEEeccC-CcccccCCccccCCC-CCCEEe
Q 005040 94 SLQNIYAFECKLGGSIPKEIGNLRGLIVLSLGFNDLNGTIPTSIGTLQQLQGFYVPE-NNLQGYVPHDLCHLE-RLNILN 171 (717)
Q Consensus 94 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~-n~i~~~~~~~~~~l~-~L~~L~ 171 (717)
.++.+.+..|++....|..|.++++|++|++++|+++...+..+....++..|++.+ |++..+.+..|..+. .++.|+
T Consensus 81 l~~~l~~~~N~l~~l~~~~f~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~l~l~~~~~i~~l~~~~f~~~~~~l~~L~ 160 (350)
T 4ay9_X 81 LHEIRIEKANNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILW 160 (350)
T ss_dssp CCEEEEEEETTCCEECTTSBCCCTTCCEEEEEEECCSSCCCCTTCCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEE
T ss_pred hhhhhcccCCcccccCchhhhhccccccccccccccccCCchhhcccchhhhhhhccccccccccccchhhcchhhhhhc
Confidence 344566667888877778888888888888888888866666666777777777754 567766666666664 577788
Q ss_pred ccCCcCcccCCccccCCCCCCeEEecC-ccccCCCChhhhcccCCCeEEccCCcCcccCCccccCCCCCCeEEccCC-CC
Q 005040 172 LSGNKLSGAIPQCLASLTSLRSLYLQS-NKLSSSLPSSLWSLEYILRINLSSNSLKGTLPSNIQKLNVLIDLDLSRN-QL 249 (717)
Q Consensus 172 L~~n~l~~~~~~~~~~l~~L~~L~L~~-N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N-~l 249 (717)
|++|+|+.+.+..| ..++|++|++++ |.++...+..|.++++|+.|+|++|+|+...+..|. +|+.|.+.++ .+
T Consensus 161 L~~N~i~~i~~~~f-~~~~L~~l~l~~~n~l~~i~~~~f~~l~~L~~LdLs~N~l~~lp~~~~~---~L~~L~~l~~~~l 236 (350)
T 4ay9_X 161 LNKNGIQEIHNSAF-NGTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTRIHSLPSYGLE---NLKKLRARSTYNL 236 (350)
T ss_dssp CCSSCCCEECTTSS-TTEEEEEEECTTCTTCCCCCTTTTTTEECCSEEECTTSCCCCCCSSSCT---TCCEEECTTCTTC
T ss_pred cccccccCCChhhc-cccchhHHhhccCCcccCCCHHHhccCcccchhhcCCCCcCccChhhhc---cchHhhhccCCCc
Confidence 88888875444444 345677777764 566655455677777777777777777754443444 3444444333 33
Q ss_pred CCCCcccccCCcccccccccCcc
Q 005040 250 SSDIPSTIGTLKNLETLSLAGNQ 272 (717)
Q Consensus 250 ~~~~~~~~~~l~~L~~L~l~~N~ 272 (717)
+ ..| .+..+++|+.++++++.
T Consensus 237 ~-~lP-~l~~l~~L~~l~l~~~~ 257 (350)
T 4ay9_X 237 K-KLP-TLEKLVALMEASLTYPS 257 (350)
T ss_dssp C-CCC-CTTTCCSCCEEECSCHH
T ss_pred C-cCC-CchhCcChhhCcCCCCc
Confidence 3 344 26667777777776543
No 344
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.89 E-value=1.2e-25 Score=254.46 Aligned_cols=327 Identities=14% Similarity=0.104 Sum_probs=186.8
Q ss_pred cCCCCCcEEECCCCcceecC----CcCCCCCCCCCEEEcccccccCccCCcccccccccccCccCCcEEeccCCCCcccC
Q 005040 9 TNATKLIGLDLGLNSFSGHI----PNTFGNLRHLSVLSLMMNNLTTESSSADQWSFLSSLTNCRNLANLALASNPLGGIL 84 (717)
Q Consensus 9 ~~l~~L~~L~L~~n~i~~~~----~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~l~~l~~L~~L~L~~N~l~~~~ 84 (717)
..+++|++|+|++|.+++.. +..+..+++|++|+|++|.++.+.... +...+.++++|++|+|++|.+.+ .
T Consensus 161 ~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~~~~L~~L~L~~n~~~~~~~~~----l~~~~~~~~~L~~L~L~~~~~~~-l 235 (592)
T 3ogk_B 161 THCRKIKTLLMEESSFSEKDGKWLHELAQHNTSLEVLNFYMTEFAKISPKD----LETIARNCRSLVSVKVGDFEILE-L 235 (592)
T ss_dssp HHCTTCSEEECTTCEEECCCSHHHHHHHHHCCCCCEEECTTCCCSSCCHHH----HHHHHHHCTTCCEEECSSCBGGG-G
T ss_pred hhCCCCCEEECccccccCcchhHHHHHHhcCCCccEEEeeccCCCccCHHH----HHHHHhhCCCCcEEeccCccHHH-H
Confidence 35677777777777776542 223456677777777777776432211 22334567778888888877764 4
Q ss_pred CcchhccccccceeeecCCcce---ecCCccccCCCCCcEEEccCCCCcccCCccccccCCCCEEeccCCcccccCC-cc
Q 005040 85 PPLIGNFSASLQNIYAFECKLG---GSIPKEIGNLRGLIVLSLGFNDLNGTIPTSIGTLQQLQGFYVPENNLQGYVP-HD 160 (717)
Q Consensus 85 ~~~~~~l~~~L~~L~l~~n~l~---~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~i~~~~~-~~ 160 (717)
+..+..+ ++|++|++..+... ...+..+..+++|+.|+++++... .+|..+..+++|++|+|++|.+++... ..
T Consensus 236 ~~~~~~~-~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~-~l~~~~~~~~~L~~L~Ls~~~l~~~~~~~~ 313 (592)
T 3ogk_B 236 VGFFKAA-ANLEEFCGGSLNEDIGMPEKYMNLVFPRKLCRLGLSYMGPN-EMPILFPFAAQIRKLDLLYALLETEDHCTL 313 (592)
T ss_dssp HHHHHHC-TTCCEEEECBCCCCTTCTTSSSCCCCCTTCCEEEETTCCTT-TGGGGGGGGGGCCEEEETTCCCCHHHHHHH
T ss_pred HHHHhhh-hHHHhhcccccccccchHHHHHHhhccccccccCccccchh-HHHHHHhhcCCCcEEecCCCcCCHHHHHHH
Confidence 4556655 56777777653322 233345666667777777665433 456666777788888888877654332 23
Q ss_pred ccCCCCCCEEeccCCcCcc-cCCccccCCCCCCeEEec-----------CccccCC-CChhhhcccCCCeEEccCCcCcc
Q 005040 161 LCHLERLNILNLSGNKLSG-AIPQCLASLTSLRSLYLQ-----------SNKLSSS-LPSSLWSLEYILRINLSSNSLKG 227 (717)
Q Consensus 161 ~~~l~~L~~L~L~~n~l~~-~~~~~~~~l~~L~~L~L~-----------~N~l~~~-~~~~~~~l~~L~~L~l~~N~l~~ 227 (717)
+..+++|++|+++ |.+.+ ..+..+..+++|++|+|+ .|.+++. ++..+..+++|++|+++.|.+++
T Consensus 314 ~~~~~~L~~L~L~-~~~~~~~l~~~~~~~~~L~~L~L~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~l~~ 392 (592)
T 3ogk_B 314 IQKCPNLEVLETR-NVIGDRGLEVLAQYCKQLKRLRIERGADEQGMEDEEGLVSQRGLIALAQGCQELEYMAVYVSDITN 392 (592)
T ss_dssp HTTCTTCCEEEEE-GGGHHHHHHHHHHHCTTCCEEEEECCCCSSTTSSTTCCCCHHHHHHHHHHCTTCSEEEEEESCCCH
T ss_pred HHhCcCCCEEecc-CccCHHHHHHHHHhCCCCCEEEeecCccccccccccCccCHHHHHHHHhhCccCeEEEeecCCccH
Confidence 4667777777777 33332 223334556677777777 2455432 12223446677777776666665
Q ss_pred cCCccccC-CCCCCeEEcc----CCCCCCC-----CcccccCCcccccccccCcc--ccCCCCccccc-cCccceEeccC
Q 005040 228 TLPSNIQK-LNVLIDLDLS----RNQLSSD-----IPSTIGTLKNLETLSLAGNQ--FQGPIPESVGN-LISLESLDFSN 294 (717)
Q Consensus 228 ~~~~~~~~-l~~L~~L~l~----~N~l~~~-----~~~~~~~l~~L~~L~l~~N~--l~~~~~~~~~~-l~~L~~L~L~~ 294 (717)
..+..+.. +++|+.|+++ .|.+++. ++..+..+++|+.|+++.|. +++..+..+.. +++|+.|+|++
T Consensus 393 ~~~~~l~~~~~~L~~L~l~~~~~~n~l~~~p~~~~~~~~~~~~~~L~~L~L~~~~~~l~~~~~~~~~~~~~~L~~L~L~~ 472 (592)
T 3ogk_B 393 ESLESIGTYLKNLCDFRLVLLDREERITDLPLDNGVRSLLIGCKKLRRFAFYLRQGGLTDLGLSYIGQYSPNVRWMLLGY 472 (592)
T ss_dssp HHHHHHHHHCCSCCEEEEEECSCCSCCSSCCCHHHHHHHHHHCTTCCEEEEECCGGGCCHHHHHHHHHSCTTCCEEEECS
T ss_pred HHHHHHHhhCCCCcEEEEeecCCCccccCchHHHHHHHHHHhCCCCCEEEEecCCCCccHHHHHHHHHhCccceEeeccC
Confidence 54444543 6667777774 5556542 22224456666666665432 44433333332 56666666666
Q ss_pred CCCCCC-CcccccccccccEEEccCCcccccc-cc-cccccccccccccCCc
Q 005040 295 NNLSGK-IPKSLEALSHLKQFNVSHNRLEGEI-PV-KGSFKDFSAQSYFGNY 343 (717)
Q Consensus 295 N~~~~~-~~~~~~~l~~L~~L~l~~N~l~~~~-p~-~~~~~~~~~~~~~~n~ 343 (717)
|++++. ++..+..+++|+.|++++|++++.. +. ...++.+..+.+.+|.
T Consensus 473 n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~ls~n~ 524 (592)
T 3ogk_B 473 VGESDEGLMEFSRGCPNLQKLEMRGCCFSERAIAAAVTKLPSLRYLWVQGYR 524 (592)
T ss_dssp CCSSHHHHHHHHTCCTTCCEEEEESCCCBHHHHHHHHHHCSSCCEEEEESCB
T ss_pred CCCCHHHHHHHHhcCcccCeeeccCCCCcHHHHHHHHHhcCccCeeECcCCc
Confidence 666542 2334455666666666666664432 11 1234444444444443
No 345
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.89 E-value=5.4e-23 Score=216.11 Aligned_cols=241 Identities=17% Similarity=0.117 Sum_probs=142.8
Q ss_pred EEeccCCCCcccCCcchhccccccceeeecCCcceecCCccccCCCCCcEEEccCCCCcccC-CccccccCCCCE-Eecc
Q 005040 72 NLALASNPLGGILPPLIGNFSASLQNIYAFECKLGGSIPKEIGNLRGLIVLSLGFNDLNGTI-PTSIGTLQQLQG-FYVP 149 (717)
Q Consensus 72 ~L~L~~N~l~~~~~~~~~~l~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~-~~~~~~l~~L~~-L~l~ 149 (717)
+++.++|+++ .+|..+ ++++++|+|++|+|+.+.+.+|.++++|++|+|++|++.+.+ +.+|.++++|++ +.++
T Consensus 13 ~v~C~~~~Lt-~iP~~l---~~~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~ 88 (350)
T 4ay9_X 13 VFLCQESKVT-EIPSDL---PRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEK 88 (350)
T ss_dssp EEEEESTTCC-SCCTTC---CTTCSEEEEESCCCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEEE
T ss_pred EEEecCCCCC-ccCcCc---CCCCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhccc
Confidence 3444555554 233322 234555555555555444556677777777777777764433 345667766654 4555
Q ss_pred CCcccccCCccccCCCCCCEEeccCCcCcccCCccccCCCCCCeEEecC-ccccCCCChhhhccc-CCCeEEccCCcCcc
Q 005040 150 ENNLQGYVPHDLCHLERLNILNLSGNKLSGAIPQCLASLTSLRSLYLQS-NKLSSSLPSSLWSLE-YILRINLSSNSLKG 227 (717)
Q Consensus 150 ~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~-N~l~~~~~~~~~~l~-~L~~L~l~~N~l~~ 227 (717)
.|+|+.+.+..|..+++|++|++++|+|+...+..+....++..|++.+ |++....+..|..+. .++.|+|++|+|+.
T Consensus 89 ~N~l~~l~~~~f~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~l~l~~~~~i~~l~~~~f~~~~~~l~~L~L~~N~i~~ 168 (350)
T 4ay9_X 89 ANNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQE 168 (350)
T ss_dssp ETTCCEECTTSBCCCTTCCEEEEEEECCSSCCCCTTCCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCSSCCCE
T ss_pred CCcccccCchhhhhccccccccccccccccCCchhhcccchhhhhhhccccccccccccchhhcchhhhhhccccccccC
Confidence 6777766667777777777777777777755555555566666677654 456544455555554 56677777777774
Q ss_pred cCCccccCCCCCCeEEccC-CCCCCCCcccccCCcccccccccCccccCCCCccccccCccceEeccCCCCCCCCccccc
Q 005040 228 TLPSNIQKLNVLIDLDLSR-NQLSSDIPSTIGTLKNLETLSLAGNQFQGPIPESVGNLISLESLDFSNNNLSGKIPKSLE 306 (717)
Q Consensus 228 ~~~~~~~~l~~L~~L~l~~-N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~~~~~~~~~ 306 (717)
+.+..| ...+|+.|++++ |.++.+.+..|..+++|++|+|++|+|+...+..+.+ |+.|.+.++.-...+| .+.
T Consensus 169 i~~~~f-~~~~L~~l~l~~~n~l~~i~~~~f~~l~~L~~LdLs~N~l~~lp~~~~~~---L~~L~~l~~~~l~~lP-~l~ 243 (350)
T 4ay9_X 169 IHNSAF-NGTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTRIHSLPSYGLEN---LKKLRARSTYNLKKLP-TLE 243 (350)
T ss_dssp ECTTSS-TTEEEEEEECTTCTTCCCCCTTTTTTEECCSEEECTTSCCCCCCSSSCTT---CCEEECTTCTTCCCCC-CTT
T ss_pred CChhhc-cccchhHHhhccCCcccCCCHHHhccCcccchhhcCCCCcCccChhhhcc---chHhhhccCCCcCcCC-Cch
Confidence 433333 345677777764 5566544556677777777777777777544444443 3344333332222445 366
Q ss_pred ccccccEEEccCCcc
Q 005040 307 ALSHLKQFNVSHNRL 321 (717)
Q Consensus 307 ~l~~L~~L~l~~N~l 321 (717)
.+++|+.+++.++.-
T Consensus 244 ~l~~L~~l~l~~~~~ 258 (350)
T 4ay9_X 244 KLVALMEASLTYPSH 258 (350)
T ss_dssp TCCSCCEEECSCHHH
T ss_pred hCcChhhCcCCCCcc
Confidence 777777777765443
No 346
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.88 E-value=4.7e-25 Score=249.67 Aligned_cols=307 Identities=14% Similarity=0.023 Sum_probs=230.4
Q ss_pred ccccCCCCCcEEECCCCcce----ecCCcCCCCCCCCCEEEcccccccCccCCcccccccccccCccCCcEEeccCCCCc
Q 005040 6 NSITNATKLIGLDLGLNSFS----GHIPNTFGNLRHLSVLSLMMNNLTTESSSADQWSFLSSLTNCRNLANLALASNPLG 81 (717)
Q Consensus 6 ~~~~~l~~L~~L~L~~n~i~----~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~l~~l~~L~~L~L~~N~l~ 81 (717)
..+..+++|++|+|++|.++ +..+..+.++++|++|+|++|.+..++ ..+..+++|++|+++.+...
T Consensus 186 ~~~~~~~~L~~L~L~~n~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~l~---------~~~~~~~~L~~L~l~~~~~~ 256 (592)
T 3ogk_B 186 ELAQHNTSLEVLNFYMTEFAKISPKDLETIARNCRSLVSVKVGDFEILELV---------GFFKAAANLEEFCGGSLNED 256 (592)
T ss_dssp HHHHHCCCCCEEECTTCCCSSCCHHHHHHHHHHCTTCCEEECSSCBGGGGH---------HHHHHCTTCCEEEECBCCCC
T ss_pred HHHhcCCCccEEEeeccCCCccCHHHHHHHHhhCCCCcEEeccCccHHHHH---------HHHhhhhHHHhhcccccccc
Confidence 34557899999999999997 344555678899999999999988754 33788999999999864333
Q ss_pred ---ccCCcchhccccccceeeecCCcceecCCccccCCCCCcEEEccCCCCcccCC-ccccccCCCCEEeccCCccccc-
Q 005040 82 ---GILPPLIGNFSASLQNIYAFECKLGGSIPKEIGNLRGLIVLSLGFNDLNGTIP-TSIGTLQQLQGFYVPENNLQGY- 156 (717)
Q Consensus 82 ---~~~~~~~~~l~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~-~~~~~l~~L~~L~l~~n~i~~~- 156 (717)
...+..+..+ ++|+.|.+.++... .+|..+..+++|++|+|++|.++.... ..+..+++|++|+++ +.+...
T Consensus 257 ~~~~~~~~~l~~~-~~L~~L~l~~~~~~-~l~~~~~~~~~L~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~-~~~~~~~ 333 (592)
T 3ogk_B 257 IGMPEKYMNLVFP-RKLCRLGLSYMGPN-EMPILFPFAAQIRKLDLLYALLETEDHCTLIQKCPNLEVLETR-NVIGDRG 333 (592)
T ss_dssp TTCTTSSSCCCCC-TTCCEEEETTCCTT-TGGGGGGGGGGCCEEEETTCCCCHHHHHHHHTTCTTCCEEEEE-GGGHHHH
T ss_pred cchHHHHHHhhcc-ccccccCccccchh-HHHHHHhhcCCCcEEecCCCcCCHHHHHHHHHhCcCCCEEecc-CccCHHH
Confidence 1233344444 57999999886443 667778889999999999999875443 346789999999999 555433
Q ss_pred CCccccCCCCCCEEecc-----------CCcCcccCC-ccccCCCCCCeEEecCccccCCCChhhhc-ccCCCeEEcc--
Q 005040 157 VPHDLCHLERLNILNLS-----------GNKLSGAIP-QCLASLTSLRSLYLQSNKLSSSLPSSLWS-LEYILRINLS-- 221 (717)
Q Consensus 157 ~~~~~~~l~~L~~L~L~-----------~n~l~~~~~-~~~~~l~~L~~L~L~~N~l~~~~~~~~~~-l~~L~~L~l~-- 221 (717)
.+..+..+++|++|+|+ .|.+++... ..+..+++|++|+++.|.+++..+..+.. +++|++|+++
T Consensus 334 l~~~~~~~~~L~~L~L~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~~L~~L~l~~~ 413 (592)
T 3ogk_B 334 LEVLAQYCKQLKRLRIERGADEQGMEDEEGLVSQRGLIALAQGCQELEYMAVYVSDITNESLESIGTYLKNLCDFRLVLL 413 (592)
T ss_dssp HHHHHHHCTTCCEEEEECCCCSSTTSSTTCCCCHHHHHHHHHHCTTCSEEEEEESCCCHHHHHHHHHHCCSCCEEEEEEC
T ss_pred HHHHHHhCCCCCEEEeecCccccccccccCccCHHHHHHHHhhCccCeEEEeecCCccHHHHHHHHhhCCCCcEEEEeec
Confidence 33344678899999999 367764322 23456899999999999998766666665 8999999996
Q ss_pred --CCcCccc-----CCccccCCCCCCeEEccCCC--CCCCCccccc-CCcccccccccCccccCCC-CccccccCccceE
Q 005040 222 --SNSLKGT-----LPSNIQKLNVLIDLDLSRNQ--LSSDIPSTIG-TLKNLETLSLAGNQFQGPI-PESVGNLISLESL 290 (717)
Q Consensus 222 --~N~l~~~-----~~~~~~~l~~L~~L~l~~N~--l~~~~~~~~~-~l~~L~~L~l~~N~l~~~~-~~~~~~l~~L~~L 290 (717)
.|.+++. ++..+.++++|+.|++++|. +++..+..+. .+++|++|++++|++++.. +..+..+++|+.|
T Consensus 414 ~~~n~l~~~p~~~~~~~~~~~~~~L~~L~L~~~~~~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L 493 (592)
T 3ogk_B 414 DREERITDLPLDNGVRSLLIGCKKLRRFAFYLRQGGLTDLGLSYIGQYSPNVRWMLLGYVGESDEGLMEFSRGCPNLQKL 493 (592)
T ss_dssp SCCSCCSSCCCHHHHHHHHHHCTTCCEEEEECCGGGCCHHHHHHHHHSCTTCCEEEECSCCSSHHHHHHHHTCCTTCCEE
T ss_pred CCCccccCchHHHHHHHHHHhCCCCCEEEEecCCCCccHHHHHHHHHhCccceEeeccCCCCCHHHHHHHHhcCcccCee
Confidence 6778753 23346779999999998543 6654444444 4889999999999987633 4455788999999
Q ss_pred eccCCCCCCC-CcccccccccccEEEccCCccccc
Q 005040 291 DFSNNNLSGK-IPKSLEALSHLKQFNVSHNRLEGE 324 (717)
Q Consensus 291 ~L~~N~~~~~-~~~~~~~l~~L~~L~l~~N~l~~~ 324 (717)
+|++|++++. ++..+..+++|+.|+|++|+++..
T Consensus 494 ~l~~n~l~~~~~~~~~~~l~~L~~L~ls~n~it~~ 528 (592)
T 3ogk_B 494 EMRGCCFSERAIAAAVTKLPSLRYLWVQGYRASMT 528 (592)
T ss_dssp EEESCCCBHHHHHHHHHHCSSCCEEEEESCBCCTT
T ss_pred eccCCCCcHHHHHHHHHhcCccCeeECcCCcCCHH
Confidence 9999998754 344456789999999999998764
No 347
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.88 E-value=9.6e-22 Score=190.38 Aligned_cols=163 Identities=26% Similarity=0.259 Sum_probs=106.9
Q ss_pred CCCcEEEccCCCCcccCCccccccCCCCEEeccCCcccccCCccccCCCCCCEEeccCCcCcccCCccccCCCCCCeEEe
Q 005040 117 RGLIVLSLGFNDLNGTIPTSIGTLQQLQGFYVPENNLQGYVPHDLCHLERLNILNLSGNKLSGAIPQCLASLTSLRSLYL 196 (717)
Q Consensus 117 ~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 196 (717)
++|++|+|++|+++...+..|.++++|++|++++|++++..+..|..+++|++|+|++|++++..+..|..+++|++|+|
T Consensus 28 ~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L 107 (208)
T 2o6s_A 28 AQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQLQSLPNGVFDKLTQLKELAL 107 (208)
T ss_dssp TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred CCCcEEEcCCCccCcCChhhhcccccCcEEECCCCccCccChhhcCCCCCcCEEECCCCcCCccCHhHhcCccCCCEEEc
Confidence 45666666666666555555666666666666666666555555666666777777777666555555666667777777
Q ss_pred cCccccCCCChhhhcccCCCeEEccCCcCcccCCccccCCCCCCeEEccCCCCCCCCcccccCCcccccccccCccccCC
Q 005040 197 QSNKLSSSLPSSLWSLEYILRINLSSNSLKGTLPSNIQKLNVLIDLDLSRNQLSSDIPSTIGTLKNLETLSLAGNQFQGP 276 (717)
Q Consensus 197 ~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~ 276 (717)
++|++++..+..|..+++|++|+|++|.+++..+..|..+++|+.|++++|.+.+ .+++|++|+++.|++++.
T Consensus 108 ~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~-------~~~~l~~L~~~~n~~~g~ 180 (208)
T 2o6s_A 108 NTNQLQSLPDGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWDC-------TCPGIRYLSEWINKHSGV 180 (208)
T ss_dssp CSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCCBCC-------CTTTTHHHHHHHHHCTTT
T ss_pred CCCcCcccCHhHhccCCcCCEEECCCCccceeCHHHhccCCCccEEEecCCCeec-------CCCCHHHHHHHHHhCCce
Confidence 7777765555556666777777777777765555556667777777777776553 345677777777777777
Q ss_pred CCccccccCc
Q 005040 277 IPESVGNLIS 286 (717)
Q Consensus 277 ~~~~~~~l~~ 286 (717)
+|..++.++.
T Consensus 181 ip~~~~~l~~ 190 (208)
T 2o6s_A 181 VRNSAGSVAP 190 (208)
T ss_dssp BBCTTSSBCT
T ss_pred eeccCccccC
Confidence 7766665543
No 348
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.87 E-value=1e-21 Score=190.14 Aligned_cols=179 Identities=26% Similarity=0.243 Sum_probs=108.3
Q ss_pred cEEEccCCCCcccCCccccccCCCCEEeccCCcccccCCccccCCCCCCEEeccCCcCcccCCccccCCCCCCeEEecCc
Q 005040 120 IVLSLGFNDLNGTIPTSIGTLQQLQGFYVPENNLQGYVPHDLCHLERLNILNLSGNKLSGAIPQCLASLTSLRSLYLQSN 199 (717)
Q Consensus 120 ~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N 199 (717)
+.++++++.++. +|..+ .++|++|++++|++++..+..|..+++|++|+|++|++++..+..|..+++|++|+|++|
T Consensus 10 ~~v~c~~~~l~~-~p~~~--~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n 86 (208)
T 2o6s_A 10 TTVECYSQGRTS-VPTGI--PAQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTN 86 (208)
T ss_dssp TEEECCSSCCSS-CCSCC--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred CEEEecCCCccC-CCCCC--CCCCcEEEcCCCccCcCChhhhcccccCcEEECCCCccCccChhhcCCCCCcCEEECCCC
Confidence 456666666663 33322 346777777777777666656666777777777777776555555666666666666666
Q ss_pred cccCCCChhhhcccCCCeEEccCCcCcccCCccccCCCCCCeEEccCCCCCCCCcccccCCcccccccccCccccCCCCc
Q 005040 200 KLSSSLPSSLWSLEYILRINLSSNSLKGTLPSNIQKLNVLIDLDLSRNQLSSDIPSTIGTLKNLETLSLAGNQFQGPIPE 279 (717)
Q Consensus 200 ~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~ 279 (717)
++++..+..|..+++|++|++++|.|++..+..|..+++|+.|++++|.+++..+..+..+++|++|++++|++.+
T Consensus 87 ~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~---- 162 (208)
T 2o6s_A 87 QLQSLPNGVFDKLTQLKELALNTNQLQSLPDGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWDC---- 162 (208)
T ss_dssp CCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCCBCC----
T ss_pred cCCccCHhHhcCccCCCEEEcCCCcCcccCHhHhccCCcCCEEECCCCccceeCHHHhccCCCccEEEecCCCeec----
Confidence 6665555555666666666666666665555555666666666666666665444445556666666666665442
Q ss_pred cccccCccceEeccCCCCCCCCccccccc
Q 005040 280 SVGNLISLESLDFSNNNLSGKIPKSLEAL 308 (717)
Q Consensus 280 ~~~~l~~L~~L~L~~N~~~~~~~~~~~~l 308 (717)
.+++|+.|+++.|++++.+|..+..+
T Consensus 163 ---~~~~l~~L~~~~n~~~g~ip~~~~~l 188 (208)
T 2o6s_A 163 ---TCPGIRYLSEWINKHSGVVRNSAGSV 188 (208)
T ss_dssp ---CTTTTHHHHHHHHHCTTTBBCTTSSB
T ss_pred ---CCCCHHHHHHHHHhCCceeeccCccc
Confidence 23455555555555555555554444
No 349
>1zar_A RIO2 kinase; serine kinase, winged-helix, RIO domain, ADP-Mn complex, rRNA processing, transferase; HET: ADP; 1.75A {Archaeoglobus fulgidus} SCOP: a.4.5.56 d.144.1.9 PDB: 1tqi_A* 1tqp_A* 1tqm_A* 1zao_A*
Probab=99.87 E-value=1.1e-22 Score=206.02 Aligned_cols=148 Identities=17% Similarity=0.122 Sum_probs=117.9
Q ss_pred HHhccCCccccccccccEEEEEEEecCCCeEEEEEechhhH------------------HHHHHHHHHHHHHHhcCCCce
Q 005040 424 RATDEFNECNLLGTGGFGSVYKGTLSDGTNVAIKIFNLQLE------------------RAFRSFDSECEILRNVRHRNL 485 (717)
Q Consensus 424 ~~~~~~~~~~~lg~G~~g~V~~~~~~~~~~vavK~~~~~~~------------------~~~~~~~~e~~~l~~l~hpni 485 (717)
.....|.+.+.||+|+||.||+|.+.+|+.||+|+++.... .....+.+|++++++++|
T Consensus 87 ~~~~~~~~~~~iG~G~~g~Vy~~~~~~g~~valK~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~E~~~l~~l~~--- 163 (282)
T 1zar_A 87 RSGKVDAIGKLMGEGKESAVFNCYSEKFGECVVKFHKVGHTSFKKVKEKRDYGDLHFSVLAIRSARNEFRALQKLQG--- 163 (282)
T ss_dssp HTTSCSEEEEEEEECSSEEEEEEEETTTEEEEEEEECC------CCCC-------CHHHHHHHHHHHHHHHHHHTTT---
T ss_pred hCCeEEEecCEeccCCCceEEEEEeCCCCEEEEEEEECCCCchhhhhhhhhhcchhhHHHHHHHHHHHHHHHHhccC---
Confidence 33456667799999999999999997799999999864321 234668899999999994
Q ss_pred eeEeeeeecCCeeEEEEEccCCCCHHHHHhhCCCCCCHHHHHHHHHHHHHHHHHHhhcCCCCCeEecCCCCCCeeeCCCC
Q 005040 486 LKILGSCSNLDFKALVLEFMPNGSLEKWLYSHNYFLDILQRLNIMIDVGSALEYLHHCHSSAPIIHCDLKPTNILLDENM 565 (717)
Q Consensus 486 v~~~~~~~~~~~~~lv~e~~~~g~L~~~l~~~~~~~~~~~~~~i~~~i~~~l~~LH~~~~~~~ivH~dlk~~Nill~~~~ 565 (717)
+++.+++.. +..++||||+++|+|.+ +.. .....++.|++.||.||| +.+|+||||||+||+++ ++
T Consensus 164 ~~v~~~~~~-~~~~lvmE~~~g~~L~~-l~~-------~~~~~i~~qi~~~l~~lH----~~giiHrDlkp~NILl~-~~ 229 (282)
T 1zar_A 164 LAVPKVYAW-EGNAVLMELIDAKELYR-VRV-------ENPDEVLDMILEEVAKFY----HRGIVHGDLSQYNVLVS-EE 229 (282)
T ss_dssp SSSCCEEEE-ETTEEEEECCCCEEGGG-CCC-------SCHHHHHHHHHHHHHHHH----HTTEECSCCSTTSEEEE-TT
T ss_pred CCcCeEEec-cceEEEEEecCCCcHHH-cch-------hhHHHHHHHHHHHHHHHH----HCCCEeCCCCHHHEEEE-CC
Confidence 555555443 55699999999999988 432 124469999999999999 67899999999999999 99
Q ss_pred cEEEeeeccccccCCCCCceeeeccccCccccCCCccC
Q 005040 566 VAHVSDFGISKLLGEGEDSVIQTMTMATIGYMAPEYGS 603 (717)
Q Consensus 566 ~~kl~Dfgl~~~~~~~~~~~~~~~~~~t~~y~aPE~~~ 603 (717)
.+||+|||+++. +..|+|||++.
T Consensus 230 ~vkl~DFG~a~~---------------~~~~~a~e~l~ 252 (282)
T 1zar_A 230 GIWIIDFPQSVE---------------VGEEGWREILE 252 (282)
T ss_dssp EEEECCCTTCEE---------------TTSTTHHHHHH
T ss_pred cEEEEECCCCeE---------------CCCCCHHHHHH
Confidence 999999999863 33478888754
No 350
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.86 E-value=1.7e-21 Score=190.00 Aligned_cols=159 Identities=20% Similarity=0.248 Sum_probs=126.2
Q ss_pred CEEeccCCcCcccCCccccCCCCCCeEEecCccccCCCC-hhhhcccCCCeEEccCCcCcccCCccccCCCCCCeEEccC
Q 005040 168 NILNLSGNKLSGAIPQCLASLTSLRSLYLQSNKLSSSLP-SSLWSLEYILRINLSSNSLKGTLPSNIQKLNVLIDLDLSR 246 (717)
Q Consensus 168 ~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~-~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~ 246 (717)
+.+++++|.++. +|..+. ..+++|+|++|+|++..+ ..|..+++|++|+|++|.|++..+..|.++++|++|+|++
T Consensus 14 ~~l~~s~n~l~~-iP~~~~--~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~ 90 (220)
T 2v70_A 14 TTVDCSNQKLNK-IPEHIP--QYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTS 90 (220)
T ss_dssp TEEECCSSCCSS-CCSCCC--TTCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCS
T ss_pred CEeEeCCCCccc-CccCCC--CCCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCEECHHHhCCCCCCCEEECCC
Confidence 467777777763 444332 346777777777775533 4577788888888888888877777888888888888888
Q ss_pred CCCCCCCcccccCCcccccccccCccccCCCCccccccCccceEeccCCCCCCCCcccccccccccEEEccCCccccccc
Q 005040 247 NQLSSDIPSTIGTLKNLETLSLAGNQFQGPIPESVGNLISLESLDFSNNNLSGKIPKSLEALSHLKQFNVSHNRLEGEIP 326 (717)
Q Consensus 247 N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~~~~~~~~~~l~~L~~L~l~~N~l~~~~p 326 (717)
|.+++..+..|..+++|++|+|++|+|++..|..|..+++|+.|+|++|++++..|..|..+++|+.|+|++|++.+.++
T Consensus 91 N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c~c~ 170 (220)
T 2v70_A 91 NRLENVQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQITTVAPGAFDTLHSLSTLNLLANPFNCNCY 170 (220)
T ss_dssp SCCCCCCGGGGTTCSSCCEEECTTSCCCCBCTTSSTTCTTCSEEECTTSCCCCBCTTTTTTCTTCCEEECCSCCEECSGG
T ss_pred CccCccCHhHhcCCcCCCEEECCCCcCCeECHhHcCCCccCCEEECCCCcCCEECHHHhcCCCCCCEEEecCcCCcCCCc
Confidence 88888777778888888888888888888778888888899999999999988888888889999999999999988877
Q ss_pred ccc
Q 005040 327 VKG 329 (717)
Q Consensus 327 ~~~ 329 (717)
..+
T Consensus 171 l~~ 173 (220)
T 2v70_A 171 LAW 173 (220)
T ss_dssp GHH
T ss_pred hHH
Confidence 543
No 351
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.85 E-value=2.2e-21 Score=189.22 Aligned_cols=158 Identities=23% Similarity=0.325 Sum_probs=119.6
Q ss_pred CEEeccCCcCcccCCccccCCCCCCeEEecCccccCCCChhhhcccCCCeEEccCCcCcccCCccccCCCCCCeEEccCC
Q 005040 168 NILNLSGNKLSGAIPQCLASLTSLRSLYLQSNKLSSSLPSSLWSLEYILRINLSSNSLKGTLPSNIQKLNVLIDLDLSRN 247 (717)
Q Consensus 168 ~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N 247 (717)
+.+++++|.++ .+|..+. ++|+.|+|++|+|++..+..|..+++|+.|+|++|.|++..|..|.++++|++|+|++|
T Consensus 14 ~~v~c~~~~l~-~iP~~l~--~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N 90 (220)
T 2v9t_B 14 NIVDCRGKGLT-EIPTNLP--ETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGN 90 (220)
T ss_dssp TEEECTTSCCS-SCCSSCC--TTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEECCSS
T ss_pred CEEEcCCCCcC-cCCCccC--cCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECCCC
Confidence 46677777776 3444332 56777777777777666667777777777777777777777777778888888888888
Q ss_pred CCCCCCcccccCCcccccccccCccccCCCCccccccCccceEeccCCCCCCCCcccccccccccEEEccCCcccccccc
Q 005040 248 QLSSDIPSTIGTLKNLETLSLAGNQFQGPIPESVGNLISLESLDFSNNNLSGKIPKSLEALSHLKQFNVSHNRLEGEIPV 327 (717)
Q Consensus 248 ~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~~~~~~~~~~l~~L~~L~l~~N~l~~~~p~ 327 (717)
.|++..+..|..+++|++|+|++|+|++..+..|..+++|+.|+|++|+|++..+..|..+++|+.|+|++|++.+.+..
T Consensus 91 ~l~~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~c~c~l 170 (220)
T 2v9t_B 91 KITELPKSLFEGLFSLQLLLLNANKINCLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLRAIQTMHLAQNPFICDCHL 170 (220)
T ss_dssp CCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCEECSGGG
T ss_pred cCCccCHhHccCCCCCCEEECCCCCCCEeCHHHcCCCCCCCEEECCCCcCCEECHHHHhCCCCCCEEEeCCCCcCCCCcc
Confidence 88766666677788888888888888877777888888888888888888877777788888888888888888876654
Q ss_pred c
Q 005040 328 K 328 (717)
Q Consensus 328 ~ 328 (717)
.
T Consensus 171 ~ 171 (220)
T 2v9t_B 171 K 171 (220)
T ss_dssp H
T ss_pred H
Confidence 3
No 352
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.85 E-value=5.1e-21 Score=211.35 Aligned_cols=167 Identities=26% Similarity=0.345 Sum_probs=79.5
Q ss_pred CCCcEEEccCCCCcccCCccccccCCCCEEeccCCcccccCCccccCCCCCCEEeccCCcCcccCCccccCCCCCCeEEe
Q 005040 117 RGLIVLSLGFNDLNGTIPTSIGTLQQLQGFYVPENNLQGYVPHDLCHLERLNILNLSGNKLSGAIPQCLASLTSLRSLYL 196 (717)
Q Consensus 117 ~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 196 (717)
++|++|+|++|+|+ .+| ..+++|++|+|++|+|++ +|. +.+ +|++|+|++|.|++ +|. .+++|+.|+|
T Consensus 80 ~~L~~L~Ls~N~l~-~ip---~~l~~L~~L~Ls~N~l~~-ip~-l~~--~L~~L~Ls~N~l~~-lp~---~l~~L~~L~L 147 (571)
T 3cvr_A 80 PQITVLEITQNALI-SLP---ELPASLEYLDACDNRLST-LPE-LPA--SLKHLDVDNNQLTM-LPE---LPALLEYINA 147 (571)
T ss_dssp TTCSEEECCSSCCS-CCC---CCCTTCCEEECCSSCCSC-CCC-CCT--TCCEEECCSSCCSC-CCC---CCTTCCEEEC
T ss_pred CCCCEEECcCCCCc-ccc---cccCCCCEEEccCCCCCC-cch-hhc--CCCEEECCCCcCCC-CCC---cCccccEEeC
Confidence 34555555555554 233 234455555555555554 222 332 55555555555553 332 3455555555
Q ss_pred cCccccCCCChhhhcccCCCeEEccCCcCcccCCccccCCCCCCeEEccCCCCCCCCcccccCCccc-------cccccc
Q 005040 197 QSNKLSSSLPSSLWSLEYILRINLSSNSLKGTLPSNIQKLNVLIDLDLSRNQLSSDIPSTIGTLKNL-------ETLSLA 269 (717)
Q Consensus 197 ~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L-------~~L~l~ 269 (717)
++|+|++ +|. .+++|+.|+|++|.|++ +|. |. ++|+.|+|++|.|+. +|. +.. +| +.|+|+
T Consensus 148 s~N~l~~-lp~---~l~~L~~L~Ls~N~L~~-lp~-l~--~~L~~L~Ls~N~L~~-lp~-~~~--~L~~~~~~L~~L~Ls 215 (571)
T 3cvr_A 148 DNNQLTM-LPE---LPTSLEVLSVRNNQLTF-LPE-LP--ESLEALDVSTNLLES-LPA-VPV--RNHHSEETEIFFRCR 215 (571)
T ss_dssp CSSCCSC-CCC---CCTTCCEEECCSSCCSC-CCC-CC--TTCCEEECCSSCCSS-CCC-CC----------CCEEEECC
T ss_pred CCCccCc-CCC---cCCCcCEEECCCCCCCC-cch-hh--CCCCEEECcCCCCCc-hhh-HHH--hhhcccccceEEecC
Confidence 5555553 232 34455555555555553 333 33 455555555555552 333 332 34 555555
Q ss_pred CccccCCCCccccccCccceEeccCCCCCCCCccccccc
Q 005040 270 GNQFQGPIPESVGNLISLESLDFSNNNLSGKIPKSLEAL 308 (717)
Q Consensus 270 ~N~l~~~~~~~~~~l~~L~~L~L~~N~~~~~~~~~~~~l 308 (717)
+|+|+ .+|..+..+++|+.|+|++|++++.+|..+..+
T Consensus 216 ~N~l~-~lp~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l 253 (571)
T 3cvr_A 216 ENRIT-HIPENILSLDPTCTIILEDNPLSSRIRESLSQQ 253 (571)
T ss_dssp SSCCC-CCCGGGGGSCTTEEEECCSSSCCHHHHHHHHHH
T ss_pred CCcce-ecCHHHhcCCCCCEEEeeCCcCCCcCHHHHHHh
Confidence 55555 344444445555555555555555555544443
No 353
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.85 E-value=3.7e-23 Score=234.25 Aligned_cols=305 Identities=16% Similarity=0.178 Sum_probs=155.0
Q ss_pred cCCCCCcEEECCCCcceecCCcCCC-CCCCCCEEEcccc-cccCccCCcccccccccccCccCCcEEeccCCCCcccCCc
Q 005040 9 TNATKLIGLDLGLNSFSGHIPNTFG-NLRHLSVLSLMMN-NLTTESSSADQWSFLSSLTNCRNLANLALASNPLGGILPP 86 (717)
Q Consensus 9 ~~l~~L~~L~L~~n~i~~~~~~~~~-~l~~L~~L~L~~n-~l~~~~~~~~~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~ 86 (717)
..+++|++|+|++|.+++..+..+. .+++|++|+|++| .++... +...+.++++|++|+|++|.+++..+.
T Consensus 102 ~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~-------l~~~~~~~~~L~~L~L~~~~i~~~~~~ 174 (594)
T 2p1m_B 102 SSYTWLEEIRLKRMVVTDDCLELIAKSFKNFKVLVLSSCEGFSTDG-------LAAIAATCRNLKELDLRESDVDDVSGH 174 (594)
T ss_dssp HHCTTCCEEEEESCBCCHHHHHHHHHHCTTCCEEEEESCEEEEHHH-------HHHHHHHCTTCCEEECTTCEEECCCGG
T ss_pred HhCCCCCeEEeeCcEEcHHHHHHHHHhCCCCcEEeCCCcCCCCHHH-------HHHHHHhCCCCCEEeCcCCccCCcchH
Confidence 3567788888888877766666564 5777788877777 444311 111133667777777777776655444
Q ss_pred chhccc---cccceeeecCCc--cee-cCCccccCCCCCcEEEccCC-CCcccCCccccc--------------------
Q 005040 87 LIGNFS---ASLQNIYAFECK--LGG-SIPKEIGNLRGLIVLSLGFN-DLNGTIPTSIGT-------------------- 139 (717)
Q Consensus 87 ~~~~l~---~~L~~L~l~~n~--l~~-~~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~-------------------- 139 (717)
.+..+. ++|++|++++|. +.. .++..+.++++|++|+|++| .+++ ++..+..
T Consensus 175 ~l~~~~~~~~~L~~L~l~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~-l~~~~~~~~~L~~L~l~~~~~~~~~~~ 253 (594)
T 2p1m_B 175 WLSHFPDTYTSLVSLNISCLASEVSFSALERLVTRCPNLKSLKLNRAVPLEK-LATLLQRAPQLEELGTGGYTAEVRPDV 253 (594)
T ss_dssp GGGGSCTTCCCCCEEECTTCCSCCCHHHHHHHHHHCTTCCEEECCTTSCHHH-HHHHHHHCTTCSEEECSBCCCCCCHHH
T ss_pred HHHHHhhcCCcCcEEEecccCCcCCHHHHHHHHHhCCCCcEEecCCCCcHHH-HHHHHhcCCcceEcccccccCccchhh
Confidence 444332 357777777665 211 11111234566777776666 2221 2333333
Q ss_pred ----------------------------------cCCCCEEeccCCcccccCCc-cccCCCCCCEEeccCCcCcccC-Cc
Q 005040 140 ----------------------------------LQQLQGFYVPENNLQGYVPH-DLCHLERLNILNLSGNKLSGAI-PQ 183 (717)
Q Consensus 140 ----------------------------------l~~L~~L~l~~n~i~~~~~~-~~~~l~~L~~L~L~~n~l~~~~-~~ 183 (717)
+++|++|+|++|.+++.... .+..+++|++|++++| +.+.. +.
T Consensus 254 ~~~l~~~l~~~~~L~~Ls~~~~~~~~~l~~~~~~~~~L~~L~L~~~~l~~~~l~~~~~~~~~L~~L~l~~~-~~~~~l~~ 332 (594)
T 2p1m_B 254 YSGLSVALSGCKELRCLSGFWDAVPAYLPAVYSVCSRLTTLNLSYATVQSYDLVKLLCQCPKLQRLWVLDY-IEDAGLEV 332 (594)
T ss_dssp HHHHHHHHHTCTTCCEEECCBTCCGGGGGGGHHHHTTCCEEECTTCCCCHHHHHHHHTTCTTCCEEEEEGG-GHHHHHHH
T ss_pred HHHHHHHHhcCCCcccccCCcccchhhHHHHHHhhCCCCEEEccCCCCCHHHHHHHHhcCCCcCEEeCcCc-cCHHHHHH
Confidence 44455555555544322111 1234445555555544 22111 11
Q ss_pred cccCCCCCCeEEec---------CccccCCCChhhh-cccCCCeEEccCCcCcccCCcccc-CCCCCCeEEcc--C----
Q 005040 184 CLASLTSLRSLYLQ---------SNKLSSSLPSSLW-SLEYILRINLSSNSLKGTLPSNIQ-KLNVLIDLDLS--R---- 246 (717)
Q Consensus 184 ~~~~l~~L~~L~L~---------~N~l~~~~~~~~~-~l~~L~~L~l~~N~l~~~~~~~~~-~l~~L~~L~l~--~---- 246 (717)
....+++|++|+|+ .|.+++.....+. .+++|++|.+..|.+++.....+. .+++|+.|+++ +
T Consensus 333 l~~~~~~L~~L~L~~~~~~g~~~~~~l~~~~l~~l~~~~~~L~~L~~~~~~l~~~~~~~l~~~~~~L~~L~L~~~~~~~~ 412 (594)
T 2p1m_B 333 LASTCKDLRELRVFPSEPFVMEPNVALTEQGLVSVSMGCPKLESVLYFCRQMTNAALITIARNRPNMTRFRLCIIEPKAP 412 (594)
T ss_dssp HHHHCTTCCEEEEECSCTTCSSCSSCCCHHHHHHHHHHCTTCCEEEEEESCCCHHHHHHHHHHCTTCCEEEEEESSTTCC
T ss_pred HHHhCCCCCEEEEecCcccccccCCCCCHHHHHHHHHhchhHHHHHHhcCCcCHHHHHHHHhhCCCcceeEeecccCCCc
Confidence 11234555555552 2233321111121 245555555555555543333332 35666666666 3
Q ss_pred CCCCCCC-----cccccCCcccccccccCccccCCCCccccc-cCccceEeccCCCCCCCCcccc-cccccccEEEccCC
Q 005040 247 NQLSSDI-----PSTIGTLKNLETLSLAGNQFQGPIPESVGN-LISLESLDFSNNNLSGKIPKSL-EALSHLKQFNVSHN 319 (717)
Q Consensus 247 N~l~~~~-----~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~-l~~L~~L~L~~N~~~~~~~~~~-~~l~~L~~L~l~~N 319 (717)
|.+++.. +..+..+++|+.|++++ .+++..+..++. +++|+.|+|++|.+++..+..+ ..+++|+.|+|++|
T Consensus 413 ~~l~~~~~~~~~~~l~~~~~~L~~L~L~~-~l~~~~~~~l~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~L~~L~L~~n 491 (594)
T 2p1m_B 413 DYLTLEPLDIGFGAIVEHCKDLRRLSLSG-LLTDKVFEYIGTYAKKMEMLSVAFAGDSDLGMHHVLSGCDSLRKLEIRDC 491 (594)
T ss_dssp CTTTCCCTHHHHHHHHHHCTTCCEEECCS-SCCHHHHHHHHHHCTTCCEEEEESCCSSHHHHHHHHHHCTTCCEEEEESC
T ss_pred ccccCCchhhHHHHHHhhCCCccEEeecC-cccHHHHHHHHHhchhccEeeccCCCCcHHHHHHHHhcCCCcCEEECcCC
Confidence 4444211 11144556666666655 444444444443 6667777777777655444444 55677777777777
Q ss_pred cccc
Q 005040 320 RLEG 323 (717)
Q Consensus 320 ~l~~ 323 (717)
++++
T Consensus 492 ~~~~ 495 (594)
T 2p1m_B 492 PFGD 495 (594)
T ss_dssp SCCH
T ss_pred CCcH
Confidence 7643
No 354
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.85 E-value=1.4e-20 Score=207.86 Aligned_cols=182 Identities=26% Similarity=0.375 Sum_probs=156.5
Q ss_pred CCcEEEccCCCCcccCCccccccCCCCEEeccCCcccccCCccccCCCCCCEEeccCCcCcccCCccccCCCCCCeEEec
Q 005040 118 GLIVLSLGFNDLNGTIPTSIGTLQQLQGFYVPENNLQGYVPHDLCHLERLNILNLSGNKLSGAIPQCLASLTSLRSLYLQ 197 (717)
Q Consensus 118 ~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~ 197 (717)
+|+.|+|++|.+++ +|..+ .++|++|+|++|+|+. +| ..+++|++|+|++|+|++ +|. +.+ +|+.|+|+
T Consensus 60 ~L~~L~Ls~n~L~~-lp~~l--~~~L~~L~Ls~N~l~~-ip---~~l~~L~~L~Ls~N~l~~-ip~-l~~--~L~~L~Ls 128 (571)
T 3cvr_A 60 QFSELQLNRLNLSS-LPDNL--PPQITVLEITQNALIS-LP---ELPASLEYLDACDNRLST-LPE-LPA--SLKHLDVD 128 (571)
T ss_dssp TCSEEECCSSCCSC-CCSCC--CTTCSEEECCSSCCSC-CC---CCCTTCCEEECCSSCCSC-CCC-CCT--TCCEEECC
T ss_pred CccEEEeCCCCCCc-cCHhH--cCCCCEEECcCCCCcc-cc---cccCCCCEEEccCCCCCC-cch-hhc--CCCEEECC
Confidence 89999999999996 56555 3889999999999994 45 457899999999999997 666 655 99999999
Q ss_pred CccccCCCChhhhcccCCCeEEccCCcCcccCCccccCCCCCCeEEccCCCCCCCCcccccCCcccccccccCccccCCC
Q 005040 198 SNKLSSSLPSSLWSLEYILRINLSSNSLKGTLPSNIQKLNVLIDLDLSRNQLSSDIPSTIGTLKNLETLSLAGNQFQGPI 277 (717)
Q Consensus 198 ~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~ 277 (717)
+|+|++ +|. .+++|+.|+|++|.|++ +|. .+++|+.|+|++|.|++ +|. |. ++|+.|+|++|+|+ .+
T Consensus 129 ~N~l~~-lp~---~l~~L~~L~Ls~N~l~~-lp~---~l~~L~~L~Ls~N~L~~-lp~-l~--~~L~~L~Ls~N~L~-~l 195 (571)
T 3cvr_A 129 NNQLTM-LPE---LPALLEYINADNNQLTM-LPE---LPTSLEVLSVRNNQLTF-LPE-LP--ESLEALDVSTNLLE-SL 195 (571)
T ss_dssp SSCCSC-CCC---CCTTCCEEECCSSCCSC-CCC---CCTTCCEEECCSSCCSC-CCC-CC--TTCCEEECCSSCCS-SC
T ss_pred CCcCCC-CCC---cCccccEEeCCCCccCc-CCC---cCCCcCEEECCCCCCCC-cch-hh--CCCCEEECcCCCCC-ch
Confidence 999996 555 68999999999999996 555 67899999999999997 666 66 89999999999999 56
Q ss_pred CccccccCcc-------ceEeccCCCCCCCCcccccccccccEEEccCCcccccccc
Q 005040 278 PESVGNLISL-------ESLDFSNNNLSGKIPKSLEALSHLKQFNVSHNRLEGEIPV 327 (717)
Q Consensus 278 ~~~~~~l~~L-------~~L~L~~N~~~~~~~~~~~~l~~L~~L~l~~N~l~~~~p~ 327 (717)
|. +.. +| +.|+|++|+|+ .+|..+..+++|+.|+|++|++++.+|.
T Consensus 196 p~-~~~--~L~~~~~~L~~L~Ls~N~l~-~lp~~l~~l~~L~~L~L~~N~l~~~~p~ 248 (571)
T 3cvr_A 196 PA-VPV--RNHHSEETEIFFRCRENRIT-HIPENILSLDPTCTIILEDNPLSSRIRE 248 (571)
T ss_dssp CC-CC----------CCEEEECCSSCCC-CCCGGGGGSCTTEEEECCSSSCCHHHHH
T ss_pred hh-HHH--hhhcccccceEEecCCCcce-ecCHHHhcCCCCCEEEeeCCcCCCcCHH
Confidence 66 655 77 99999999999 5788888899999999999999998775
No 355
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.85 E-value=3.6e-23 Score=234.29 Aligned_cols=208 Identities=16% Similarity=0.118 Sum_probs=155.9
Q ss_pred cCCCCCcEEEccCCCCcccCCc-cccccCCCCEEeccCCcccccCCcc-ccCCCCCCEEecc---------CCcCcccCC
Q 005040 114 GNLRGLIVLSLGFNDLNGTIPT-SIGTLQQLQGFYVPENNLQGYVPHD-LCHLERLNILNLS---------GNKLSGAIP 182 (717)
Q Consensus 114 ~~l~~L~~L~L~~n~l~~~~~~-~~~~l~~L~~L~l~~n~i~~~~~~~-~~~l~~L~~L~L~---------~n~l~~~~~ 182 (717)
..+++|++|+|++|.++..... .+..+++|++|++++| ++...... ...+++|++|+++ .+.+++...
T Consensus 286 ~~~~~L~~L~L~~~~l~~~~l~~~~~~~~~L~~L~l~~~-~~~~~l~~l~~~~~~L~~L~L~~~~~~g~~~~~~l~~~~l 364 (594)
T 2p1m_B 286 SVCSRLTTLNLSYATVQSYDLVKLLCQCPKLQRLWVLDY-IEDAGLEVLASTCKDLRELRVFPSEPFVMEPNVALTEQGL 364 (594)
T ss_dssp HHHTTCCEEECTTCCCCHHHHHHHHTTCTTCCEEEEEGG-GHHHHHHHHHHHCTTCCEEEEECSCTTCSSCSSCCCHHHH
T ss_pred HhhCCCCEEEccCCCCCHHHHHHHHhcCCCcCEEeCcCc-cCHHHHHHHHHhCCCCCEEEEecCcccccccCCCCCHHHH
Confidence 3568999999999997744322 3568999999999998 54332222 3358999999993 456664433
Q ss_pred cccc-CCCCCCeEEecCccccCCCChhhh-cccCCCeEEcc--C----CcCcccC-----CccccCCCCCCeEEccCCCC
Q 005040 183 QCLA-SLTSLRSLYLQSNKLSSSLPSSLW-SLEYILRINLS--S----NSLKGTL-----PSNIQKLNVLIDLDLSRNQL 249 (717)
Q Consensus 183 ~~~~-~l~~L~~L~L~~N~l~~~~~~~~~-~l~~L~~L~l~--~----N~l~~~~-----~~~~~~l~~L~~L~l~~N~l 249 (717)
..+. .+++|+.|.++.|.+++.....+. .+++|+.|+++ + |.++... +..+..+++|+.|+|++ .+
T Consensus 365 ~~l~~~~~~L~~L~~~~~~l~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~~~l~~~~~~L~~L~L~~-~l 443 (594)
T 2p1m_B 365 VSVSMGCPKLESVLYFCRQMTNAALITIARNRPNMTRFRLCIIEPKAPDYLTLEPLDIGFGAIVEHCKDLRRLSLSG-LL 443 (594)
T ss_dssp HHHHHHCTTCCEEEEEESCCCHHHHHHHHHHCTTCCEEEEEESSTTCCCTTTCCCTHHHHHHHHHHCTTCCEEECCS-SC
T ss_pred HHHHHhchhHHHHHHhcCCcCHHHHHHHHhhCCCcceeEeecccCCCcccccCCchhhHHHHHHhhCCCccEEeecC-cc
Confidence 3333 489999999999999865555554 58999999999 4 5666321 12367889999999987 77
Q ss_pred CCCCcccccC-CcccccccccCccccCCCCccc-cccCccceEeccCCCCCCCCcc-cccccccccEEEccCCcccc
Q 005040 250 SSDIPSTIGT-LKNLETLSLAGNQFQGPIPESV-GNLISLESLDFSNNNLSGKIPK-SLEALSHLKQFNVSHNRLEG 323 (717)
Q Consensus 250 ~~~~~~~~~~-l~~L~~L~l~~N~l~~~~~~~~-~~l~~L~~L~L~~N~~~~~~~~-~~~~l~~L~~L~l~~N~l~~ 323 (717)
++..+..+.. +++|+.|+|++|.+++..+..+ ..+++|+.|+|++|++++.... .+..+++|+.|++++|+++.
T Consensus 444 ~~~~~~~l~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~l~~~~~~~ 520 (594)
T 2p1m_B 444 TDKVFEYIGTYAKKMEMLSVAFAGDSDLGMHHVLSGCDSLRKLEIRDCPFGDKALLANASKLETMRSLWMSSCSVSF 520 (594)
T ss_dssp CHHHHHHHHHHCTTCCEEEEESCCSSHHHHHHHHHHCTTCCEEEEESCSCCHHHHHHTGGGGGGSSEEEEESSCCBH
T ss_pred cHHHHHHHHHhchhccEeeccCCCCcHHHHHHHHhcCCCcCEEECcCCCCcHHHHHHHHHhCCCCCEEeeeCCCCCH
Confidence 7655555555 8999999999999987666555 6789999999999999654443 44568999999999999843
No 356
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.84 E-value=3.1e-21 Score=196.89 Aligned_cols=170 Identities=25% Similarity=0.369 Sum_probs=85.6
Q ss_pred CCCCCcEEEccCCCCcccCCccccccCCCCEEeccCCcccccCCccccCCCCCCEEeccCCcCcccCCccccCCCCCCeE
Q 005040 115 NLRGLIVLSLGFNDLNGTIPTSIGTLQQLQGFYVPENNLQGYVPHDLCHLERLNILNLSGNKLSGAIPQCLASLTSLRSL 194 (717)
Q Consensus 115 ~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L 194 (717)
.+++|++|++++|.++.. + .+..+++|++|+|++|++++..+ +..+++|++|+|++|.+++. + .+..+++|++|
T Consensus 44 ~l~~L~~L~l~~~~i~~~-~-~~~~l~~L~~L~L~~n~l~~~~~--l~~l~~L~~L~l~~n~l~~~-~-~l~~l~~L~~L 117 (291)
T 1h6t_A 44 ELNSIDQIIANNSDIKSV-Q-GIQYLPNVTKLFLNGNKLTDIKP--LANLKNLGWLFLDENKVKDL-S-SLKDLKKLKSL 117 (291)
T ss_dssp HHHTCCEEECTTSCCCCC-T-TGGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCCG-G-GGTTCTTCCEE
T ss_pred hcCcccEEEccCCCcccC-h-hHhcCCCCCEEEccCCccCCCcc--cccCCCCCEEECCCCcCCCC-h-hhccCCCCCEE
Confidence 444555555555555532 2 24555555555555555554332 55555555555555555532 2 25555555555
Q ss_pred EecCccccCCCChhhhcccCCCeEEccCCcCcccCCccccCCCCCCeEEccCCCCCCCCcccccCCcccccccccCcccc
Q 005040 195 YLQSNKLSSSLPSSLWSLEYILRINLSSNSLKGTLPSNIQKLNVLIDLDLSRNQLSSDIPSTIGTLKNLETLSLAGNQFQ 274 (717)
Q Consensus 195 ~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~ 274 (717)
+|++|++++. ..+..+++|+.|++++|.+++. ..+..+++|+.|++++|.+++..+ +..+++|+.|++++|+++
T Consensus 118 ~L~~n~i~~~--~~l~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~L~~N~l~~~~~--l~~l~~L~~L~L~~N~i~ 191 (291)
T 1h6t_A 118 SLEHNGISDI--NGLVHLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSKNHIS 191 (291)
T ss_dssp ECTTSCCCCC--GGGGGCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCC
T ss_pred ECCCCcCCCC--hhhcCCCCCCEEEccCCcCCcc--hhhccCCCCCEEEccCCccccchh--hcCCCccCEEECCCCcCC
Confidence 5555555532 2344555555555555555532 345555555555555555554322 445555555555555554
Q ss_pred CCCCccccccCccceEeccCCCCC
Q 005040 275 GPIPESVGNLISLESLDFSNNNLS 298 (717)
Q Consensus 275 ~~~~~~~~~l~~L~~L~L~~N~~~ 298 (717)
+. + .+..+++|+.|+|++|++.
T Consensus 192 ~l-~-~l~~l~~L~~L~l~~n~i~ 213 (291)
T 1h6t_A 192 DL-R-ALAGLKNLDVLELFSQECL 213 (291)
T ss_dssp BC-G-GGTTCTTCSEEEEEEEEEE
T ss_pred CC-h-hhccCCCCCEEECcCCccc
Confidence 32 2 2445555555555555554
No 357
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.84 E-value=8.5e-21 Score=200.16 Aligned_cols=183 Identities=25% Similarity=0.195 Sum_probs=105.5
Q ss_pred cEEEccCCCCcccCCccccccCCCCEEeccCCcccccCCcccc-CCCCCCEEeccCCcCcccCCccccCCCCCCeEEecC
Q 005040 120 IVLSLGFNDLNGTIPTSIGTLQQLQGFYVPENNLQGYVPHDLC-HLERLNILNLSGNKLSGAIPQCLASLTSLRSLYLQS 198 (717)
Q Consensus 120 ~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~-~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~ 198 (717)
+.+++++|.++. +|..+. +.++.|+|++|+|++..+..|. ++++|++|+|++|+|++..+..|.++++|++|+|++
T Consensus 21 ~~l~c~~~~l~~-iP~~~~--~~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~ 97 (361)
T 2xot_A 21 NILSCSKQQLPN-VPQSLP--SYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSS 97 (361)
T ss_dssp TEEECCSSCCSS-CCSSCC--TTCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCS
T ss_pred CEEEeCCCCcCc-cCccCC--CCCCEEECCCCCCCccChhhhhhcccccCEEECCCCcCCccChhhccCCCCCCEEECCC
Confidence 467777777763 444332 3466667776666666665565 666666666666666655555566666666666666
Q ss_pred ccccCCCChhhhcccCCCeEEccCCcCcccCCccccCCCCCCeEEccCCCCCCCCcccccCCcccccccccCccccCCCC
Q 005040 199 NKLSSSLPSSLWSLEYILRINLSSNSLKGTLPSNIQKLNVLIDLDLSRNQLSSDIPSTIGTLKNLETLSLAGNQFQGPIP 278 (717)
Q Consensus 199 N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~ 278 (717)
|+|++..+..|..+++|+.|+|++|+|++..+..|.++++|+.|+|++|.|++..+..|..
T Consensus 98 N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~------------------- 158 (361)
T 2xot_A 98 NHLHTLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQISRFPVELIKD------------------- 158 (361)
T ss_dssp SCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCSCCGGGTC--------------------
T ss_pred CcCCcCCHHHhCCCcCCCEEECCCCcccEECHHHhCCcccCCEEECCCCcCCeeCHHHhcC-------------------
Confidence 6666555555555566666666666655555555555555555555555555433322210
Q ss_pred ccccccCccceEeccCCCCCCCCccccccccc--ccEEEccCCccccccc
Q 005040 279 ESVGNLISLESLDFSNNNLSGKIPKSLEALSH--LKQFNVSHNRLEGEIP 326 (717)
Q Consensus 279 ~~~~~l~~L~~L~L~~N~~~~~~~~~~~~l~~--L~~L~l~~N~l~~~~p 326 (717)
+..+++|+.|+|++|+|++..+..+..++. |+.|+|++|++.+.+.
T Consensus 159 --~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~~~l~~l~l~~N~~~C~C~ 206 (361)
T 2xot_A 159 --GNKLPKLMLLDLSSNKLKKLPLTDLQKLPAWVKNGLYLHNNPLECDCK 206 (361)
T ss_dssp -----CTTCCEEECCSSCCCCCCHHHHHHSCHHHHTTEECCSSCEECCHH
T ss_pred --cccCCcCCEEECCCCCCCccCHHHhhhccHhhcceEEecCCCccCCcC
Confidence 034555666666666666544455555555 3666677776666543
No 358
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.84 E-value=1.2e-20 Score=210.97 Aligned_cols=191 Identities=26% Similarity=0.359 Sum_probs=106.6
Q ss_pred CCcEEeccCCCCcccCCcchhccccccceeeecCCcceecCCccccCCCCCcEEEccCCCCcccCCccccccCCCCEEec
Q 005040 69 NLANLALASNPLGGILPPLIGNFSASLQNIYAFECKLGGSIPKEIGNLRGLIVLSLGFNDLNGTIPTSIGTLQQLQGFYV 148 (717)
Q Consensus 69 ~L~~L~L~~N~l~~~~~~~~~~l~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l 148 (717)
.+..+.++.+.+....+ +..+ .+|+.|++++|.+... + .+..+++|+.|+|++|.|++..+ +..+++|+.|+|
T Consensus 22 ~l~~l~l~~~~i~~~~~--~~~L-~~L~~L~l~~n~i~~l-~-~l~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~L 94 (605)
T 1m9s_A 22 ETIKDNLKKKSVTDAVT--QNEL-NSIDQIIANNSDIKSV-Q-GIQYLPNVTKLFLNGNKLTDIKP--LTNLKNLGWLFL 94 (605)
T ss_dssp HHHHHHTTCSCTTSEEC--HHHH-TTCCCCBCTTCCCCCC-T-TGGGCTTCCEEECTTSCCCCCGG--GGGCTTCCEEEC
T ss_pred HHHHHhccCCCcccccc--hhcC-CCCCEEECcCCCCCCC-h-HHccCCCCCEEEeeCCCCCCChh--hccCCCCCEEEC
Confidence 34444444444443322 2222 3455555555554422 2 35566666666666666664433 666666666666
Q ss_pred cCCcccccCCccccCCCCCCEEeccCCcCcccCCccccCCCCCCeEEecCccccCCCChhhhcccCCCeEEccCCcCccc
Q 005040 149 PENNLQGYVPHDLCHLERLNILNLSGNKLSGAIPQCLASLTSLRSLYLQSNKLSSSLPSSLWSLEYILRINLSSNSLKGT 228 (717)
Q Consensus 149 ~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~ 228 (717)
++|.|.+. ..+..+++|+.|+|++|.|++. ..+..+++|+.|+|++|.+++. ..+..+++|+.|+|++|.|++.
T Consensus 95 s~N~l~~l--~~l~~l~~L~~L~Ls~N~l~~l--~~l~~l~~L~~L~Ls~N~l~~l--~~l~~l~~L~~L~Ls~N~l~~~ 168 (605)
T 1m9s_A 95 DENKIKDL--SSLKDLKKLKSLSLEHNGISDI--NGLVHLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISDI 168 (605)
T ss_dssp CSSCCCCC--TTSTTCTTCCEEECTTSCCCCC--GGGGGCTTCSEEECCSSCCCCC--GGGGSCTTCSEEECCSSCCCCC
T ss_pred cCCCCCCC--hhhccCCCCCEEEecCCCCCCC--ccccCCCccCEEECCCCccCCc--hhhcccCCCCEEECcCCcCCCc
Confidence 66666642 2456666666666666666642 2356666666666666666643 4455666666666666666644
Q ss_pred CCccccCCCCCCeEEccCCCCCCCCcccccCCcccccccccCccccCC
Q 005040 229 LPSNIQKLNVLIDLDLSRNQLSSDIPSTIGTLKNLETLSLAGNQFQGP 276 (717)
Q Consensus 229 ~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~ 276 (717)
.| +..+++|+.|+|++|.|++. ..+..+++|+.|+|++|++.+.
T Consensus 169 ~~--l~~l~~L~~L~Ls~N~i~~l--~~l~~l~~L~~L~L~~N~l~~~ 212 (605)
T 1m9s_A 169 VP--LAGLTKLQNLYLSKNHISDL--RALAGLKNLDVLELFSQECLNK 212 (605)
T ss_dssp GG--GTTCTTCCEEECCSSCCCBC--GGGTTCTTCSEEECCSEEEECC
T ss_pred hh--hccCCCCCEEECcCCCCCCC--hHHccCCCCCEEEccCCcCcCC
Confidence 33 56666666666666666642 2355566666666666666543
No 359
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.84 E-value=1.5e-20 Score=191.84 Aligned_cols=169 Identities=28% Similarity=0.412 Sum_probs=113.1
Q ss_pred ccceeeecCCcceecCCccccCCCCCcEEEccCCCCcccCCccccccCCCCEEeccCCcccccCCccccCCCCCCEEecc
Q 005040 94 SLQNIYAFECKLGGSIPKEIGNLRGLIVLSLGFNDLNGTIPTSIGTLQQLQGFYVPENNLQGYVPHDLCHLERLNILNLS 173 (717)
Q Consensus 94 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~ 173 (717)
+|+.|++++|.+... + .+..+++|++|+|++|++++..+ +.++++|++|++++|.+++. ..+..+++|++|+|+
T Consensus 47 ~L~~L~l~~~~i~~~-~-~~~~l~~L~~L~L~~n~l~~~~~--l~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~L~ 120 (291)
T 1h6t_A 47 SIDQIIANNSDIKSV-Q-GIQYLPNVTKLFLNGNKLTDIKP--LANLKNLGWLFLDENKVKDL--SSLKDLKKLKSLSLE 120 (291)
T ss_dssp TCCEEECTTSCCCCC-T-TGGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCCG--GGGTTCTTCCEEECT
T ss_pred cccEEEccCCCcccC-h-hHhcCCCCCEEEccCCccCCCcc--cccCCCCCEEECCCCcCCCC--hhhccCCCCCEEECC
Confidence 345555555544422 2 35666677777777777765433 66777777777777777653 236777777777777
Q ss_pred CCcCcccCCccccCCCCCCeEEecCccccCCCChhhhcccCCCeEEccCCcCcccCCccccCCCCCCeEEccCCCCCCCC
Q 005040 174 GNKLSGAIPQCLASLTSLRSLYLQSNKLSSSLPSSLWSLEYILRINLSSNSLKGTLPSNIQKLNVLIDLDLSRNQLSSDI 253 (717)
Q Consensus 174 ~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~ 253 (717)
+|++++. ..+..+++|+.|++++|++++. ..+..+++|+.|++++|.+++..+ +..+++|+.|++++|.+++ +
T Consensus 121 ~n~i~~~--~~l~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~L~~N~l~~~~~--l~~l~~L~~L~L~~N~i~~-l 193 (291)
T 1h6t_A 121 HNGISDI--NGLVHLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSKNHISD-L 193 (291)
T ss_dssp TSCCCCC--GGGGGCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCB-C
T ss_pred CCcCCCC--hhhcCCCCCCEEEccCCcCCcc--hhhccCCCCCEEEccCCccccchh--hcCCCccCEEECCCCcCCC-C
Confidence 7777743 3466777777777777777754 457777777777777777775443 7777778888888887775 3
Q ss_pred cccccCCcccccccccCccccCC
Q 005040 254 PSTIGTLKNLETLSLAGNQFQGP 276 (717)
Q Consensus 254 ~~~~~~l~~L~~L~l~~N~l~~~ 276 (717)
+ .+..+++|+.|++++|++...
T Consensus 194 ~-~l~~l~~L~~L~l~~n~i~~~ 215 (291)
T 1h6t_A 194 R-ALAGLKNLDVLELFSQECLNK 215 (291)
T ss_dssp G-GGTTCTTCSEEEEEEEEEECC
T ss_pred h-hhccCCCCCEEECcCCcccCC
Confidence 3 377778888888888877753
No 360
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.83 E-value=9.1e-21 Score=211.80 Aligned_cols=190 Identities=25% Similarity=0.340 Sum_probs=99.9
Q ss_pred CCcEEECCCCcceecCCcCCCCCCCCCEEEcccccccCccCCcccccccccccCccCCcEEeccCCCCcccCCcchhccc
Q 005040 13 KLIGLDLGLNSFSGHIPNTFGNLRHLSVLSLMMNNLTTESSSADQWSFLSSLTNCRNLANLALASNPLGGILPPLIGNFS 92 (717)
Q Consensus 13 ~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~l~ 92 (717)
.+..++|+.+.+.+..+ +..|.+|+.|+|++|.|+.++. +..+++|+.|+|++|++++..+ +
T Consensus 22 ~l~~l~l~~~~i~~~~~--~~~L~~L~~L~l~~n~i~~l~~----------l~~l~~L~~L~Ls~N~l~~~~~--l---- 83 (605)
T 1m9s_A 22 ETIKDNLKKKSVTDAVT--QNELNSIDQIIANNSDIKSVQG----------IQYLPNVTKLFLNGNKLTDIKP--L---- 83 (605)
T ss_dssp HHHHHHTTCSCTTSEEC--HHHHTTCCCCBCTTCCCCCCTT----------GGGCTTCCEEECTTSCCCCCGG--G----
T ss_pred HHHHHhccCCCcccccc--hhcCCCCCEEECcCCCCCCChH----------HccCCCCCEEEeeCCCCCCChh--h----
Confidence 34445566666664433 5566777777777777766432 5667777777777777664432 3
Q ss_pred cccceeeecCCcceecCCccccCCCCCcEEEccCCCCcccCCccccccCCCCEEeccCCcccccCCccccCCCCCCEEec
Q 005040 93 ASLQNIYAFECKLGGSIPKEIGNLRGLIVLSLGFNDLNGTIPTSIGTLQQLQGFYVPENNLQGYVPHDLCHLERLNILNL 172 (717)
Q Consensus 93 ~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L 172 (717)
..+++|+.|+|++|.|++. ..+..+++|+.|+|++|.|.+. ..+..+++|+.|+|
T Consensus 84 ---------------------~~l~~L~~L~Ls~N~l~~l--~~l~~l~~L~~L~Ls~N~l~~l--~~l~~l~~L~~L~L 138 (605)
T 1m9s_A 84 ---------------------TNLKNLGWLFLDENKIKDL--SSLKDLKKLKSLSLEHNGISDI--NGLVHLPQLESLYL 138 (605)
T ss_dssp ---------------------GGCTTCCEEECCSSCCCCC--TTSTTCTTCCEEECTTSCCCCC--GGGGGCTTCSEEEC
T ss_pred ---------------------ccCCCCCEEECcCCCCCCC--hhhccCCCCCEEEecCCCCCCC--ccccCCCccCEEEC
Confidence 4444444444444444421 1344444555555555544432 23444555555555
Q ss_pred cCCcCcccCCccccCCCCCCeEEecCccccCCCChhhhcccCCCeEEccCCcCcccCCccccCCCCCCeEEccCCCCCC
Q 005040 173 SGNKLSGAIPQCLASLTSLRSLYLQSNKLSSSLPSSLWSLEYILRINLSSNSLKGTLPSNIQKLNVLIDLDLSRNQLSS 251 (717)
Q Consensus 173 ~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~ 251 (717)
++|.|++. ..+..+++|+.|+|++|+|++..| +..+++|+.|+|++|.|++. ..+..+++|+.|+|++|.+.+
T Consensus 139 s~N~l~~l--~~l~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~i~~l--~~l~~l~~L~~L~L~~N~l~~ 211 (605)
T 1m9s_A 139 GNNKITDI--TVLSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSKNHISDL--RALAGLKNLDVLELFSQECLN 211 (605)
T ss_dssp CSSCCCCC--GGGGSCTTCSEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCBC--GGGTTCTTCSEEECCSEEEEC
T ss_pred CCCccCCc--hhhcccCCCCEEECcCCcCCCchh--hccCCCCCEEECcCCCCCCC--hHHccCCCCCEEEccCCcCcC
Confidence 55555432 334555555555555555554333 45555555555555555532 235555555555555555554
No 361
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.83 E-value=2e-20 Score=197.30 Aligned_cols=176 Identities=22% Similarity=0.207 Sum_probs=91.3
Q ss_pred cEEeccCCCCcccCCcchhccccccceeeecCCcceecCCcccc-CCCCCcEEEccCCCCcccCCccccccCCCCEEecc
Q 005040 71 ANLALASNPLGGILPPLIGNFSASLQNIYAFECKLGGSIPKEIG-NLRGLIVLSLGFNDLNGTIPTSIGTLQQLQGFYVP 149 (717)
Q Consensus 71 ~~L~L~~N~l~~~~~~~~~~l~~~L~~L~l~~n~l~~~~~~~~~-~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~ 149 (717)
+.+++++|.++. +|..+. ..++.|+|++|++++..+..|. ++++|++|+|++|+|+.+.+..|.++++|++|+|+
T Consensus 21 ~~l~c~~~~l~~-iP~~~~---~~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls 96 (361)
T 2xot_A 21 NILSCSKQQLPN-VPQSLP---SYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLS 96 (361)
T ss_dssp TEEECCSSCCSS-CCSSCC---TTCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECC
T ss_pred CEEEeCCCCcCc-cCccCC---CCCCEEECCCCCCCccChhhhhhcccccCEEECCCCcCCccChhhccCCCCCCEEECC
Confidence 567777777763 343322 3355555555555555555454 55555555555555554444455555555555555
Q ss_pred CCcccccCCccccCCCCCCEEeccCCcCcccCCccccCCCCCCeEEecCccccCCCChhhhcccCCCeEEccCCcCcccC
Q 005040 150 ENNLQGYVPHDLCHLERLNILNLSGNKLSGAIPQCLASLTSLRSLYLQSNKLSSSLPSSLWSLEYILRINLSSNSLKGTL 229 (717)
Q Consensus 150 ~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~ 229 (717)
+|+|+.+.+..|.++++|++|+|++|+|+...+..|.++++|+.|+|++|+| ++..
T Consensus 97 ~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l------------------------~~l~ 152 (361)
T 2xot_A 97 SNHLHTLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQI------------------------SRFP 152 (361)
T ss_dssp SSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCC------------------------CSCC
T ss_pred CCcCCcCCHHHhCCCcCCCEEECCCCcccEECHHHhCCcccCCEEECCCCcC------------------------CeeC
Confidence 5555544444455555555555555555544444444455555555555544 4332
Q ss_pred Cccc---cCCCCCCeEEccCCCCCCCCcccccCCcc--cccccccCcccc
Q 005040 230 PSNI---QKLNVLIDLDLSRNQLSSDIPSTIGTLKN--LETLSLAGNQFQ 274 (717)
Q Consensus 230 ~~~~---~~l~~L~~L~l~~N~l~~~~~~~~~~l~~--L~~L~l~~N~l~ 274 (717)
+..| ..+++|+.|+|++|.|++..+..+..++. |+.|+|++|++.
T Consensus 153 ~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~~~l~~l~l~~N~~~ 202 (361)
T 2xot_A 153 VELIKDGNKLPKLMLLDLSSNKLKKLPLTDLQKLPAWVKNGLYLHNNPLE 202 (361)
T ss_dssp GGGTC----CTTCCEEECCSSCCCCCCHHHHHHSCHHHHTTEECCSSCEE
T ss_pred HHHhcCcccCCcCCEEECCCCCCCccCHHHhhhccHhhcceEEecCCCcc
Confidence 2223 34555666666666666544445555554 255566665554
No 362
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=99.82 E-value=4e-21 Score=200.09 Aligned_cols=296 Identities=11% Similarity=0.061 Sum_probs=179.1
Q ss_pred CCCCccccC--CCCCcEEECCCCcceecCCcCCCC-CCCCCEEEccccccc--CccCCcccccccccccCccCCcEEecc
Q 005040 2 GTIPNSITN--ATKLIGLDLGLNSFSGHIPNTFGN-LRHLSVLSLMMNNLT--TESSSADQWSFLSSLTNCRNLANLALA 76 (717)
Q Consensus 2 ~~iP~~~~~--l~~L~~L~L~~n~i~~~~~~~~~~-l~~L~~L~L~~n~l~--~~~~~~~~~~~~~~l~~l~~L~~L~L~ 76 (717)
|+++..+.. +.+|+.|.++++ +....-..+.. +++|++|||++|+|. ....+ .++.+..+.+.
T Consensus 13 g~l~~~l~~~~~~~l~~L~l~g~-i~~~~~~~l~~~l~~L~~LdLs~n~i~~~~~~~~-----------~~~~~~~~~~~ 80 (329)
T 3sb4_A 13 GTLISMMTEEEANSITHLTLTGK-LNAEDFRHLRDEFPSLKVLDISNAEIKMYSGKAG-----------TYPNGKFYIYM 80 (329)
T ss_dssp TCGGGGSCHHHHHHCSEEEEEEE-ECHHHHHHHHHSCTTCCEEEEEEEEECCEEESSS-----------SSGGGCCEEEC
T ss_pred CcHHhhccchhhCceeEEEEecc-ccHHHHHHHHHhhccCeEEecCcceeEEecCccc-----------ccccccccccc
Confidence 444444443 556777777654 22122222333 666777777777776 22211 11223444444
Q ss_pred CCCCcccCCcchhc--------cccccceeeecCCcceecCCccccCCCCCcEEEccCCCCcccCCccccccCCCCEEec
Q 005040 77 SNPLGGILPPLIGN--------FSASLQNIYAFECKLGGSIPKEIGNLRGLIVLSLGFNDLNGTIPTSIGTLQQLQGFYV 148 (717)
Q Consensus 77 ~N~l~~~~~~~~~~--------l~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l 148 (717)
.|. +....|.. + .+|+.|+|.+ ++..+.+.+|.++++|+.|++++|.+..+.+.+|.++.++..+.+
T Consensus 81 ~~~---I~~~aF~~~~~~~~~g~-~~L~~l~L~~-~i~~I~~~aF~~~~~L~~l~l~~n~i~~i~~~aF~~~~~l~~l~~ 155 (329)
T 3sb4_A 81 ANF---VPAYAFSNVVNGVTKGK-QTLEKVILSE-KIKNIEDAAFKGCDNLKICQIRKKTAPNLLPEALADSVTAIFIPL 155 (329)
T ss_dssp TTE---ECTTTTEEEETTEEEEC-TTCCC-CBCT-TCCEECTTTTTTCTTCCEEEBCCSSCCEECTTSSCTTTCEEEECT
T ss_pred ccc---cCHHHhccccccccccc-CCCcEEECCc-cccchhHHHhhcCcccceEEcCCCCccccchhhhcCCCceEEecC
Confidence 442 22333333 3 4566666666 555555556666666666666666665555556666555555554
Q ss_pred cCCcc----cccCCccccCCCCCC-EEeccCCcC-cccCCccccCCCCCCeEEecCccccCCCChhhhcccCCCeEEccC
Q 005040 149 PENNL----QGYVPHDLCHLERLN-ILNLSGNKL-SGAIPQCLASLTSLRSLYLQSNKLSSSLPSSLWSLEYILRINLSS 222 (717)
Q Consensus 149 ~~n~i----~~~~~~~~~~l~~L~-~L~L~~n~l-~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~ 222 (717)
..+.. ......+|.++.+|+ .+.+....- .......-....++..+.+.++-...........+++|+.|+|++
T Consensus 156 ~~~~~~~~~~~i~~~~f~~~~~L~~~i~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~l~~~~~~L~~l~L~~ 235 (329)
T 3sb4_A 156 GSSDAYRFKNRWEHFAFIEGEPLETTIQVGAMGKLEDEIMKAGLQPRDINFLTIEGKLDNADFKLIRDYMPNLVSLDISK 235 (329)
T ss_dssp TCTHHHHTSTTTTTSCEEESCCCEEEEEECTTCCHHHHHHHTTCCGGGCSEEEEEECCCHHHHHHHHHHCTTCCEEECTT
T ss_pred cchhhhhccccccccccccccccceeEEecCCCcHHHHHhhcccCccccceEEEeeeecHHHHHHHHHhcCCCeEEECCC
Confidence 44221 222333444555554 343332211 000000011234556666655432211111112478999999999
Q ss_pred CcCcccCCccccCCCCCCeEEccCCCCCCCCcccccCCcccc-cccccCccccCCCCccccccCccceEeccCCCCCCCC
Q 005040 223 NSLKGTLPSNIQKLNVLIDLDLSRNQLSSDIPSTIGTLKNLE-TLSLAGNQFQGPIPESVGNLISLESLDFSNNNLSGKI 301 (717)
Q Consensus 223 N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~-~L~l~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~~~~ 301 (717)
|+++.+....|.++.+|+.|+|.+| ++.+.+.+|.++++|+ .|++.+ .++.+.+.+|.++++|+.|+|++|.+..+.
T Consensus 236 n~i~~I~~~aF~~~~~L~~l~l~~n-i~~I~~~aF~~~~~L~~~l~l~~-~l~~I~~~aF~~c~~L~~l~l~~n~i~~I~ 313 (329)
T 3sb4_A 236 TNATTIPDFTFAQKKYLLKIKLPHN-LKTIGQRVFSNCGRLAGTLELPA-SVTAIEFGAFMGCDNLRYVLATGDKITTLG 313 (329)
T ss_dssp BCCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEEEECT-TCCEECTTTTTTCTTEEEEEECSSCCCEEC
T ss_pred CCcceecHhhhhCCCCCCEEECCcc-cceehHHHhhCChhccEEEEEcc-cceEEchhhhhCCccCCEEEeCCCccCccc
Confidence 9999888888999999999999988 7777788899999999 999988 777677889999999999999999998888
Q ss_pred cccccccccccEEEc
Q 005040 302 PKSLEALSHLKQFNV 316 (717)
Q Consensus 302 ~~~~~~l~~L~~L~l 316 (717)
+..|.++++|+.++.
T Consensus 314 ~~aF~~~~~L~~ly~ 328 (329)
T 3sb4_A 314 DELFGNGVPSKLIYK 328 (329)
T ss_dssp TTTTCTTCCCCEEEC
T ss_pred hhhhcCCcchhhhcc
Confidence 889999999998864
No 363
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.82 E-value=9.2e-20 Score=178.98 Aligned_cols=156 Identities=23% Similarity=0.302 Sum_probs=119.4
Q ss_pred CCEEeccCCcCcccCCccccCCCCCCeEEecCccccCCCChhhhcccCCCeEEccCCcCcccCCccccCCCCCCeEEccC
Q 005040 167 LNILNLSGNKLSGAIPQCLASLTSLRSLYLQSNKLSSSLPSSLWSLEYILRINLSSNSLKGTLPSNIQKLNVLIDLDLSR 246 (717)
Q Consensus 167 L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~ 246 (717)
-+.+++++++++ .+|..+. ++|+.|+|++|++++..|..|..+++|++|+|++|+|+...+..|..+++|+.|+|++
T Consensus 21 ~~~v~c~~~~l~-~ip~~~~--~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~ 97 (229)
T 3e6j_A 21 GTTVDCRSKRHA-SVPAGIP--TNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLGT 97 (229)
T ss_dssp TTEEECTTSCCS-SCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred CCEeEccCCCcC-ccCCCCC--CCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCCCCcChhhcccCCCcCEEECCC
Confidence 456777777776 3444332 6777777777777777677777777788888888887766666677788888888888
Q ss_pred CCCCCCCcccccCCcccccccccCccccCCCCccccccCccceEeccCCCCCCCCcccccccccccEEEccCCccccccc
Q 005040 247 NQLSSDIPSTIGTLKNLETLSLAGNQFQGPIPESVGNLISLESLDFSNNNLSGKIPKSLEALSHLKQFNVSHNRLEGEIP 326 (717)
Q Consensus 247 N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~~~~~~~~~~l~~L~~L~l~~N~l~~~~p 326 (717)
|.|++..+..|..+++|++|+|++|+|+ .+|..+..+++|++|+|++|++++..+..|..+++|+.|+|++|++.+.++
T Consensus 98 N~l~~l~~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~c~ 176 (229)
T 3e6j_A 98 NQLTVLPSAVFDRLVHLKELFMCCNKLT-ELPRGIERLTHLTHLALDQNQLKSIPHGAFDRLSSLTHAYLFGNPWDCECR 176 (229)
T ss_dssp SCCCCCCTTTTTTCTTCCEEECCSSCCC-SCCTTGGGCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECTTSCBCTTBG
T ss_pred CcCCccChhHhCcchhhCeEeccCCccc-ccCcccccCCCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCCccCCcc
Confidence 8888766667778888888888888887 667777888888888888888887766778888888888888888887765
No 364
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.82 E-value=7.6e-20 Score=178.27 Aligned_cols=150 Identities=25% Similarity=0.335 Sum_probs=73.4
Q ss_pred EEEccCCCCcccCCccccccCCCCEEeccCCcccccCCccccCCCCCCEEeccCCcCcccCCccccCCCCCCeEEecCcc
Q 005040 121 VLSLGFNDLNGTIPTSIGTLQQLQGFYVPENNLQGYVPHDLCHLERLNILNLSGNKLSGAIPQCLASLTSLRSLYLQSNK 200 (717)
Q Consensus 121 ~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~ 200 (717)
.+++++|.++ .+|..+. ++|+.|+|++|+|+.+.+..|..+++|++|+|++|+|++..|..|.++++|++|+|++|+
T Consensus 15 ~v~c~~~~l~-~iP~~l~--~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~ 91 (220)
T 2v9t_B 15 IVDCRGKGLT-EIPTNLP--ETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNK 91 (220)
T ss_dssp EEECTTSCCS-SCCSSCC--TTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEECCSSC
T ss_pred EEEcCCCCcC-cCCCccC--cCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECCCCc
Confidence 4555555555 2333222 345555555555555444455555555555555555554445555555555555555555
Q ss_pred ccCCCChhhhcccCCCeEEccCCcCcccCCccccCCCCCCeEEccCCCCCCCCcccccCCcccccccccCccc
Q 005040 201 LSSSLPSSLWSLEYILRINLSSNSLKGTLPSNIQKLNVLIDLDLSRNQLSSDIPSTIGTLKNLETLSLAGNQF 273 (717)
Q Consensus 201 l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~l 273 (717)
|+...+..|..+++|++|+|++|+|++..+..|..+++|+.|+|++|.|++..+..|..+++|++|+|++|++
T Consensus 92 l~~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~ 164 (220)
T 2v9t_B 92 ITELPKSLFEGLFSLQLLLLNANKINCLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLRAIQTMHLAQNPF 164 (220)
T ss_dssp CCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCE
T ss_pred CCccCHhHccCCCCCCEEECCCCCCCEeCHHHcCCCCCCCEEECCCCcCCEECHHHHhCCCCCCEEEeCCCCc
Confidence 5543333444445555555555554444444444444444444444444444333444444444444444444
No 365
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.82 E-value=1.1e-19 Score=177.03 Aligned_cols=151 Identities=24% Similarity=0.292 Sum_probs=70.7
Q ss_pred EEEccCCCCcccCCccccccCCCCEEeccCCcccccCC-ccccCCCCCCEEeccCCcCcccCCccccCCCCCCeEEecCc
Q 005040 121 VLSLGFNDLNGTIPTSIGTLQQLQGFYVPENNLQGYVP-HDLCHLERLNILNLSGNKLSGAIPQCLASLTSLRSLYLQSN 199 (717)
Q Consensus 121 ~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~i~~~~~-~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N 199 (717)
.+++++|.++. +|..+. ..+++|+|++|+|++..+ ..|..+++|++|+|++|+|++..+..|.++++|++|+|++|
T Consensus 15 ~l~~s~n~l~~-iP~~~~--~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N 91 (220)
T 2v70_A 15 TVDCSNQKLNK-IPEHIP--QYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTSN 91 (220)
T ss_dssp EEECCSSCCSS-CCSCCC--TTCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSS
T ss_pred EeEeCCCCccc-CccCCC--CCCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCEECHHHhCCCCCCCEEECCCC
Confidence 45555555552 333221 233455555555554422 23445555555555555555444444555555555555555
Q ss_pred cccCCCChhhhcccCCCeEEccCCcCcccCCccccCCCCCCeEEccCCCCCCCCcccccCCcccccccccCcccc
Q 005040 200 KLSSSLPSSLWSLEYILRINLSSNSLKGTLPSNIQKLNVLIDLDLSRNQLSSDIPSTIGTLKNLETLSLAGNQFQ 274 (717)
Q Consensus 200 ~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~ 274 (717)
++++..+..|..+++|++|+|++|+|++..|..|..+++|+.|+|++|.|++..|..|..+++|++|+|++|++.
T Consensus 92 ~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~ 166 (220)
T 2v70_A 92 RLENVQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQITTVAPGAFDTLHSLSTLNLLANPFN 166 (220)
T ss_dssp CCCCCCGGGGTTCSSCCEEECTTSCCCCBCTTSSTTCTTCSEEECTTSCCCCBCTTTTTTCTTCCEEECCSCCEE
T ss_pred ccCccCHhHhcCCcCCCEEECCCCcCCeECHhHcCCCccCCEEECCCCcCCEECHHHhcCCCCCCEEEecCcCCc
Confidence 554444444444444444444444444444444444444444444444444444444444444444444444443
No 366
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.80 E-value=5.6e-19 Score=173.35 Aligned_cols=133 Identities=27% Similarity=0.328 Sum_probs=60.9
Q ss_pred CCCEEeccCCcCcccCCccccCCCCCCeEEecCccccCCCChhhhcccCCCeEEccCCcCcccCCccccCCCCCCeEEcc
Q 005040 166 RLNILNLSGNKLSGAIPQCLASLTSLRSLYLQSNKLSSSLPSSLWSLEYILRINLSSNSLKGTLPSNIQKLNVLIDLDLS 245 (717)
Q Consensus 166 ~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~ 245 (717)
+|++|+|++|.|++..+..|..+++|++|+|++|+|+...+..|..+++|+.|+|++|+|++..+..|..+++|+.|+|+
T Consensus 41 ~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls 120 (229)
T 3e6j_A 41 NAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLGTNQLTVLPSAVFDRLVHLKELFMC 120 (229)
T ss_dssp TCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECC
T ss_pred CCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCCCCcChhhcccCCCcCEEECCCCcCCccChhHhCcchhhCeEecc
Confidence 33444444444443333334444444444444444433333333444444444444444443333344444445555555
Q ss_pred CCCCCCCCcccccCCcccccccccCccccCCCCccccccCccceEeccCCCCCC
Q 005040 246 RNQLSSDIPSTIGTLKNLETLSLAGNQFQGPIPESVGNLISLESLDFSNNNLSG 299 (717)
Q Consensus 246 ~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~~ 299 (717)
+|.|+ .+|..+..+++|++|+|++|+|++..+..|..+++|+.|+|++|++..
T Consensus 121 ~N~l~-~lp~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c 173 (229)
T 3e6j_A 121 CNKLT-ELPRGIERLTHLTHLALDQNQLKSIPHGAFDRLSSLTHAYLFGNPWDC 173 (229)
T ss_dssp SSCCC-SCCTTGGGCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECTTSCBCT
T ss_pred CCccc-ccCcccccCCCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCCccC
Confidence 55554 244444555555555555555554444445555555555555555553
No 367
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.80 E-value=1.1e-19 Score=182.42 Aligned_cols=150 Identities=22% Similarity=0.360 Sum_probs=79.2
Q ss_pred ccCCCCCcEEEccCCCCcccCCccccccCCCCEEeccCCcccccCCccccCCCCCCEEeccCCcCcccCCccccCCCCCC
Q 005040 113 IGNLRGLIVLSLGFNDLNGTIPTSIGTLQQLQGFYVPENNLQGYVPHDLCHLERLNILNLSGNKLSGAIPQCLASLTSLR 192 (717)
Q Consensus 113 ~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~ 192 (717)
+..+++|++|++++|.++. ++ .+..+++|++|+|++|+|++..+ +..+++|++|+|++|++++. +. +.. ++|+
T Consensus 37 ~~~l~~L~~L~l~~n~i~~-l~-~l~~l~~L~~L~L~~N~i~~~~~--l~~l~~L~~L~L~~N~l~~l-~~-~~~-~~L~ 109 (263)
T 1xeu_A 37 QKELSGVQNFNGDNSNIQS-LA-GMQFFTNLKELHLSHNQISDLSP--LKDLTKLEELSVNRNRLKNL-NG-IPS-ACLS 109 (263)
T ss_dssp HHHHTTCSEEECTTSCCCC-CT-TGGGCTTCCEEECCSSCCCCCGG--GTTCSSCCEEECCSSCCSCC-TT-CCC-SSCC
T ss_pred hhhcCcCcEEECcCCCccc-ch-HHhhCCCCCEEECCCCccCCChh--hccCCCCCEEECCCCccCCc-Cc-ccc-Cccc
Confidence 4444555555555555552 22 45555555555555555554433 55555555555555555532 22 122 5555
Q ss_pred eEEecCccccCCCChhhhcccCCCeEEccCCcCcccCCccccCCCCCCeEEccCCCCCCCCcccccCCcccccccccCcc
Q 005040 193 SLYLQSNKLSSSLPSSLWSLEYILRINLSSNSLKGTLPSNIQKLNVLIDLDLSRNQLSSDIPSTIGTLKNLETLSLAGNQ 272 (717)
Q Consensus 193 ~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~ 272 (717)
.|+|++|++++. ..+..+++|+.|++++|+|++. ..+..+++|+.|++++|.+++. ..+..+++|+.|++++|+
T Consensus 110 ~L~L~~N~l~~~--~~l~~l~~L~~L~Ls~N~i~~~--~~l~~l~~L~~L~L~~N~i~~~--~~l~~l~~L~~L~l~~N~ 183 (263)
T 1xeu_A 110 RLFLDNNELRDT--DSLIHLKNLEILSIRNNKLKSI--VMLGFLSKLEVLDLHGNEITNT--GGLTRLKKVNWIDLTGQK 183 (263)
T ss_dssp EEECCSSCCSBS--GGGTTCTTCCEEECTTSCCCBC--GGGGGCTTCCEEECTTSCCCBC--TTSTTCCCCCEEEEEEEE
T ss_pred EEEccCCccCCC--hhhcCcccccEEECCCCcCCCC--hHHccCCCCCEEECCCCcCcch--HHhccCCCCCEEeCCCCc
Confidence 555555555532 2355555555555555555533 2455555566666666655543 345555556666666665
Q ss_pred ccC
Q 005040 273 FQG 275 (717)
Q Consensus 273 l~~ 275 (717)
+..
T Consensus 184 ~~~ 186 (263)
T 1xeu_A 184 CVN 186 (263)
T ss_dssp EEC
T ss_pred ccC
Confidence 553
No 368
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.80 E-value=6.6e-22 Score=219.76 Aligned_cols=203 Identities=21% Similarity=0.190 Sum_probs=106.8
Q ss_pred CCCCCCCEEEcccccccCccCCcccccccccccCccCCcEEeccCCC-------------CcccCCcchhccccccceee
Q 005040 33 GNLRHLSVLSLMMNNLTTESSSADQWSFLSSLTNCRNLANLALASNP-------------LGGILPPLIGNFSASLQNIY 99 (717)
Q Consensus 33 ~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~l~~l~~L~~L~L~~N~-------------l~~~~~~~~~~l~~~L~~L~ 99 (717)
...++|+.|+|++|+|+.+| ..++++++|++|++++|. +.+..|..+..+ ++|+.|+
T Consensus 346 ~~~~~L~~L~Ls~n~L~~Lp---------~~i~~l~~L~~L~l~~n~~l~~l~~ll~~~~~~~~~~~~l~~l-~~L~~L~ 415 (567)
T 1dce_A 346 ATDEQLFRCELSVEKSTVLQ---------SELESCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYF-STLKAVD 415 (567)
T ss_dssp STTTTSSSCCCCHHHHHHHH---------HHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCTGGGHHHHHHHH-HHHHHHC
T ss_pred ccCccceeccCChhhHHhhH---------HHHHHHHHHHHhccccchhhhhHHHHHHhcccccCCHHHHHHH-HhcccCc
Confidence 44566666666666666543 235566666666665553 333444444444 3455554
Q ss_pred -ecCCcceecCCccccCCCCCcEEEccCCCCcccCCccccccCCCCEEeccCCcccccCCccccCCCCCCEEeccCCcCc
Q 005040 100 -AFECKLGGSIPKEIGNLRGLIVLSLGFNDLNGTIPTSIGTLQQLQGFYVPENNLQGYVPHDLCHLERLNILNLSGNKLS 178 (717)
Q Consensus 100 -l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~ 178 (717)
++.|.+. +|..+.+++|.++...+ ..|+.|+|++|.|+++ |. |..+++|+.|+|++|+|+
T Consensus 416 ~l~~n~~~-----------~L~~l~l~~n~i~~l~~------~~L~~L~Ls~n~l~~l-p~-~~~l~~L~~L~Ls~N~l~ 476 (567)
T 1dce_A 416 PMRAAYLD-----------DLRSKFLLENSVLKMEY------ADVRVLHLAHKDLTVL-CH-LEQLLLVTHLDLSHNRLR 476 (567)
T ss_dssp GGGHHHHH-----------HHHHHHHHHHHHHHHHH------TTCSEEECTTSCCSSC-CC-GGGGTTCCEEECCSSCCC
T ss_pred chhhcccc-----------hhhhhhhhcccccccCc------cCceEEEecCCCCCCC-cC-ccccccCcEeecCccccc
Confidence 3333221 22233333344332111 1355566666666542 33 555666666666666665
Q ss_pred ccCCccccCCCCCCeEEecCccccCCCChhhhcccCCCeEEccCCcCcccC-CccccCCCCCCeEEccCCCCCCCCccc-
Q 005040 179 GAIPQCLASLTSLRSLYLQSNKLSSSLPSSLWSLEYILRINLSSNSLKGTL-PSNIQKLNVLIDLDLSRNQLSSDIPST- 256 (717)
Q Consensus 179 ~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~-~~~~~~l~~L~~L~l~~N~l~~~~~~~- 256 (717)
.+|..|+.+++|+.|+|++|+|++ +| .+..+++|+.|+|++|.|++.. |..+..+++|+.|+|++|.+++.+|..
T Consensus 477 -~lp~~~~~l~~L~~L~Ls~N~l~~-lp-~l~~l~~L~~L~Ls~N~l~~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~~ 553 (567)
T 1dce_A 477 -ALPPALAALRCLEVLQASDNALEN-VD-GVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQE 553 (567)
T ss_dssp -CCCGGGGGCTTCCEEECCSSCCCC-CG-GGTTCSSCCEEECCSSCCCSSSTTGGGGGCTTCCEEECTTSGGGGSSSCTT
T ss_pred -ccchhhhcCCCCCEEECCCCCCCC-Cc-ccCCCCCCcEEECCCCCCCCCCCcHHHhcCCCCCEEEecCCcCCCCccHHH
Confidence 445556666666666666666654 34 5556666666666666666544 566666666666666666666533321
Q ss_pred --ccCCccccccc
Q 005040 257 --IGTLKNLETLS 267 (717)
Q Consensus 257 --~~~l~~L~~L~ 267 (717)
+..+++|+.|+
T Consensus 554 ~l~~~lp~L~~L~ 566 (567)
T 1dce_A 554 RLAEMLPSVSSIL 566 (567)
T ss_dssp HHHHHCTTCSEEE
T ss_pred HHHHHCcccCccC
Confidence 22355666554
No 369
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.80 E-value=1.1e-19 Score=182.24 Aligned_cols=170 Identities=21% Similarity=0.276 Sum_probs=114.9
Q ss_pred ccCCcEEeccCCCCcccCCcchhccccccceeeecCCcceecCCccccCCCCCcEEEccCCCCcccCCccccccCCCCEE
Q 005040 67 CRNLANLALASNPLGGILPPLIGNFSASLQNIYAFECKLGGSIPKEIGNLRGLIVLSLGFNDLNGTIPTSIGTLQQLQGF 146 (717)
Q Consensus 67 l~~L~~L~L~~N~l~~~~~~~~~~l~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L 146 (717)
+.++..+++++|.+++.. .+..+ ++|++|++++|++.. ++ .+..+++|++|+|++|++++..+ +.++++|++|
T Consensus 18 l~~l~~l~l~~~~i~~~~--~~~~l-~~L~~L~l~~n~i~~-l~-~l~~l~~L~~L~L~~N~i~~~~~--l~~l~~L~~L 90 (263)
T 1xeu_A 18 LANAVKQNLGKQSVTDLV--SQKEL-SGVQNFNGDNSNIQS-LA-GMQFFTNLKELHLSHNQISDLSP--LKDLTKLEEL 90 (263)
T ss_dssp HHHHHHHHHTCSCTTSEE--CHHHH-TTCSEEECTTSCCCC-CT-TGGGCTTCCEEECCSSCCCCCGG--GTTCSSCCEE
T ss_pred HHHHHHHHhcCCCccccc--chhhc-CcCcEEECcCCCccc-ch-HHhhCCCCCEEECCCCccCCChh--hccCCCCCEE
Confidence 344444455555544322 23333 345555555555542 23 56667777888888887775443 7777888888
Q ss_pred eccCCcccccCCccccCCCCCCEEeccCCcCcccCCccccCCCCCCeEEecCccccCCCChhhhcccCCCeEEccCCcCc
Q 005040 147 YVPENNLQGYVPHDLCHLERLNILNLSGNKLSGAIPQCLASLTSLRSLYLQSNKLSSSLPSSLWSLEYILRINLSSNSLK 226 (717)
Q Consensus 147 ~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~ 226 (717)
+|++|++++..+ +.. ++|++|+|++|+|++. ..+..+++|+.|+|++|++++. + .+..+++|+.|++++|+|+
T Consensus 91 ~L~~N~l~~l~~--~~~-~~L~~L~L~~N~l~~~--~~l~~l~~L~~L~Ls~N~i~~~-~-~l~~l~~L~~L~L~~N~i~ 163 (263)
T 1xeu_A 91 SVNRNRLKNLNG--IPS-ACLSRLFLDNNELRDT--DSLIHLKNLEILSIRNNKLKSI-V-MLGFLSKLEVLDLHGNEIT 163 (263)
T ss_dssp ECCSSCCSCCTT--CCC-SSCCEEECCSSCCSBS--GGGTTCTTCCEEECTTSCCCBC-G-GGGGCTTCCEEECTTSCCC
T ss_pred ECCCCccCCcCc--ccc-CcccEEEccCCccCCC--hhhcCcccccEEECCCCcCCCC-h-HHccCCCCCEEECCCCcCc
Confidence 888888775433 223 7788888888888753 3477888888888888888754 3 5778888888888888888
Q ss_pred ccCCccccCCCCCCeEEccCCCCCCC
Q 005040 227 GTLPSNIQKLNVLIDLDLSRNQLSSD 252 (717)
Q Consensus 227 ~~~~~~~~~l~~L~~L~l~~N~l~~~ 252 (717)
+. ..+..+++|+.|++++|.++..
T Consensus 164 ~~--~~l~~l~~L~~L~l~~N~~~~~ 187 (263)
T 1xeu_A 164 NT--GGLTRLKKVNWIDLTGQKCVNE 187 (263)
T ss_dssp BC--TTSTTCCCCCEEEEEEEEEECC
T ss_pred ch--HHhccCCCCCEEeCCCCcccCC
Confidence 55 6678888888888888888764
No 370
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.79 E-value=9e-22 Score=218.66 Aligned_cols=218 Identities=20% Similarity=0.151 Sum_probs=137.9
Q ss_pred ccCccCCcEEeccCCCCcccCCcchhccccccceeeecCCcceecCCccccCCCCCcEEEccCCCCcccCCccccccCCC
Q 005040 64 LTNCRNLANLALASNPLGGILPPLIGNFSASLQNIYAFECKLGGSIPKEIGNLRGLIVLSLGFNDLNGTIPTSIGTLQQL 143 (717)
Q Consensus 64 l~~l~~L~~L~L~~N~l~~~~~~~~~~l~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L 143 (717)
+..+++|+.|+|++|+++ .+|..+..+ ++|+.|++++|.....+|.. +..+.+.+..|..++++++|
T Consensus 345 ~~~~~~L~~L~Ls~n~L~-~Lp~~i~~l-~~L~~L~l~~n~~l~~l~~l-----------l~~~~~~~~~~~~l~~l~~L 411 (567)
T 1dce_A 345 SATDEQLFRCELSVEKST-VLQSELESC-KELQELEPENKWCLLTIILL-----------MRALDPLLYEKETLQYFSTL 411 (567)
T ss_dssp CSTTTTSSSCCCCHHHHH-HHHHHHHHH-HHHHHHCTTCHHHHHHHHHH-----------HHHHCTGGGHHHHHHHHHHH
T ss_pred cccCccceeccCChhhHH-hhHHHHHHH-HHHHHhccccchhhhhHHHH-----------HHhcccccCCHHHHHHHHhc
Confidence 355667777777777776 556666666 45666666554321111100 11112344566677777777
Q ss_pred CEEe-ccCCcccccCCccccCCCCCCEEeccCCcCcccCCccccCCCCCCeEEecCccccCCCChhhhcccCCCeEEccC
Q 005040 144 QGFY-VPENNLQGYVPHDLCHLERLNILNLSGNKLSGAIPQCLASLTSLRSLYLQSNKLSSSLPSSLWSLEYILRINLSS 222 (717)
Q Consensus 144 ~~L~-l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~ 222 (717)
+.|+ ++.|.+. +|+.+.+++|.|+...+ ..|+.|+|++|+|++ +|. +..+++|+.|+|++
T Consensus 412 ~~L~~l~~n~~~-----------~L~~l~l~~n~i~~l~~------~~L~~L~Ls~n~l~~-lp~-~~~l~~L~~L~Ls~ 472 (567)
T 1dce_A 412 KAVDPMRAAYLD-----------DLRSKFLLENSVLKMEY------ADVRVLHLAHKDLTV-LCH-LEQLLLVTHLDLSH 472 (567)
T ss_dssp HHHCGGGHHHHH-----------HHHHHHHHHHHHHHHHH------TTCSEEECTTSCCSS-CCC-GGGGTTCCEEECCS
T ss_pred ccCcchhhcccc-----------hhhhhhhhcccccccCc------cCceEEEecCCCCCC-CcC-ccccccCcEeecCc
Confidence 7777 5655443 34455566666653222 246777777777774 454 77777777777777
Q ss_pred CcCcccCCccccCCCCCCeEEccCCCCCCCCcccccCCcccccccccCccccCCC-CccccccCccceEeccCCCCCCCC
Q 005040 223 NSLKGTLPSNIQKLNVLIDLDLSRNQLSSDIPSTIGTLKNLETLSLAGNQFQGPI-PESVGNLISLESLDFSNNNLSGKI 301 (717)
Q Consensus 223 N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~-~~~~~~l~~L~~L~L~~N~~~~~~ 301 (717)
|.|+ .+|..|+.+++|+.|+|++|.|++ +| .++.+++|++|+|++|+|++.. |..++.+++|+.|+|++|++++.+
T Consensus 473 N~l~-~lp~~~~~l~~L~~L~Ls~N~l~~-lp-~l~~l~~L~~L~Ls~N~l~~~~~p~~l~~l~~L~~L~L~~N~l~~~~ 549 (567)
T 1dce_A 473 NRLR-ALPPALAALRCLEVLQASDNALEN-VD-GVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEE 549 (567)
T ss_dssp SCCC-CCCGGGGGCTTCCEEECCSSCCCC-CG-GGTTCSSCCEEECCSSCCCSSSTTGGGGGCTTCCEEECTTSGGGGSS
T ss_pred cccc-ccchhhhcCCCCCEEECCCCCCCC-Cc-ccCCCCCCcEEECCCCCCCCCCCcHHHhcCCCCCEEEecCCcCCCCc
Confidence 7777 566777777777777777777775 45 6777777777777777777665 777777777777777777777554
Q ss_pred cc---cccccccccEEEc
Q 005040 302 PK---SLEALSHLKQFNV 316 (717)
Q Consensus 302 ~~---~~~~l~~L~~L~l 316 (717)
|. .+..+++|+.|++
T Consensus 550 ~~~~~l~~~lp~L~~L~l 567 (567)
T 1dce_A 550 GIQERLAEMLPSVSSILT 567 (567)
T ss_dssp SCTTHHHHHCTTCSEEEC
T ss_pred cHHHHHHHHCcccCccCC
Confidence 42 2334677777754
No 371
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.79 E-value=4.3e-19 Score=169.93 Aligned_cols=153 Identities=17% Similarity=0.257 Sum_probs=83.3
Q ss_pred cCCCCCcEEEccCCCCcccCCccccccCCCCEEeccCCcccccCCccccCCCCCCEEeccCCcCcccCCccccCCCCCCe
Q 005040 114 GNLRGLIVLSLGFNDLNGTIPTSIGTLQQLQGFYVPENNLQGYVPHDLCHLERLNILNLSGNKLSGAIPQCLASLTSLRS 193 (717)
Q Consensus 114 ~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~ 193 (717)
..+++|++|++++|.++ .++ .+..+++|++|++++|.++.. ..+..+++|++|++++|++++..+..++.+++|++
T Consensus 41 ~~l~~L~~L~l~~n~i~-~l~-~l~~l~~L~~L~l~~n~~~~~--~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~ 116 (197)
T 4ezg_A 41 AQMNSLTYITLANINVT-DLT-GIEYAHNIKDLTINNIHATNY--NPISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTL 116 (197)
T ss_dssp HHHHTCCEEEEESSCCS-CCT-TGGGCTTCSEEEEESCCCSCC--GGGTTCTTCCEEEEECTTCBGGGSCCCTTCTTCCE
T ss_pred hhcCCccEEeccCCCcc-ChH-HHhcCCCCCEEEccCCCCCcc--hhhhcCCCCCEEEeECCccCcccChhhcCCCCCCE
Confidence 44556666666666666 233 456666666666666655422 34555666666666666665545555556666666
Q ss_pred EEecCccccCCCChhhhcccCCCeEEccCCc-CcccCCccccCCCCCCeEEccCCCCCCCCcccccCCcccccccccCcc
Q 005040 194 LYLQSNKLSSSLPSSLWSLEYILRINLSSNS-LKGTLPSNIQKLNVLIDLDLSRNQLSSDIPSTIGTLKNLETLSLAGNQ 272 (717)
Q Consensus 194 L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~-l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~ 272 (717)
|+|++|++++..+..+..+++|++|++++|. ++ .++ .+..+++|+.|++++|.+++. + .+..+++|++|++++|+
T Consensus 117 L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~~i~-~~~-~l~~l~~L~~L~l~~n~i~~~-~-~l~~l~~L~~L~l~~N~ 192 (197)
T 4ezg_A 117 LDISHSAHDDSILTKINTLPKVNSIDLSYNGAIT-DIM-PLKTLPELKSLNIQFDGVHDY-R-GIEDFPKLNQLYAFSQT 192 (197)
T ss_dssp EECCSSBCBGGGHHHHTTCSSCCEEECCSCTBCC-CCG-GGGGCSSCCEEECTTBCCCCC-T-TGGGCSSCCEEEECBC-
T ss_pred EEecCCccCcHhHHHHhhCCCCCEEEccCCCCcc-ccH-hhcCCCCCCEEECCCCCCcCh-H-HhccCCCCCEEEeeCcc
Confidence 6666666655455555555555555555555 44 222 455555555555555555532 2 34455555555555555
Q ss_pred cc
Q 005040 273 FQ 274 (717)
Q Consensus 273 l~ 274 (717)
|.
T Consensus 193 i~ 194 (197)
T 4ezg_A 193 IG 194 (197)
T ss_dssp --
T ss_pred cC
Confidence 43
No 372
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.78 E-value=5.7e-19 Score=169.09 Aligned_cols=153 Identities=15% Similarity=0.230 Sum_probs=82.0
Q ss_pred cccCCCCEEeccCCcccccCCccccCCCCCCEEeccCCcCcccCCccccCCCCCCeEEecCccccCCCChhhhcccCCCe
Q 005040 138 GTLQQLQGFYVPENNLQGYVPHDLCHLERLNILNLSGNKLSGAIPQCLASLTSLRSLYLQSNKLSSSLPSSLWSLEYILR 217 (717)
Q Consensus 138 ~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~ 217 (717)
..+++|++|++++|.++.. + .+..+++|++|++++|.++. +..+..+++|++|++++|++++..+..+..+++|++
T Consensus 41 ~~l~~L~~L~l~~n~i~~l-~-~l~~l~~L~~L~l~~n~~~~--~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~ 116 (197)
T 4ezg_A 41 AQMNSLTYITLANINVTDL-T-GIEYAHNIKDLTINNIHATN--YNPISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTL 116 (197)
T ss_dssp HHHHTCCEEEEESSCCSCC-T-TGGGCTTCSEEEEESCCCSC--CGGGTTCTTCCEEEEECTTCBGGGSCCCTTCTTCCE
T ss_pred hhcCCccEEeccCCCccCh-H-HHhcCCCCCEEEccCCCCCc--chhhhcCCCCCEEEeECCccCcccChhhcCCCCCCE
Confidence 5566666666666666632 3 45666666666666665542 224555666666666666665544555555555666
Q ss_pred EEccCCcCcccCCccccCCCCCCeEEccCCC-CCCCCcccccCCcccccccccCccccCCCCccccccCccceEeccCCC
Q 005040 218 INLSSNSLKGTLPSNIQKLNVLIDLDLSRNQ-LSSDIPSTIGTLKNLETLSLAGNQFQGPIPESVGNLISLESLDFSNNN 296 (717)
Q Consensus 218 L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~-l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~L~~N~ 296 (717)
|++++|.+++..+..+..+++|++|++++|. ++. ++ .+..+++|++|++++|++++ ++ .+..+++|+.|++++|+
T Consensus 117 L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~~i~~-~~-~l~~l~~L~~L~l~~n~i~~-~~-~l~~l~~L~~L~l~~N~ 192 (197)
T 4ezg_A 117 LDISHSAHDDSILTKINTLPKVNSIDLSYNGAITD-IM-PLKTLPELKSLNIQFDGVHD-YR-GIEDFPKLNQLYAFSQT 192 (197)
T ss_dssp EECCSSBCBGGGHHHHTTCSSCCEEECCSCTBCCC-CG-GGGGCSSCCEEECTTBCCCC-CT-TGGGCSSCCEEEECBC-
T ss_pred EEecCCccCcHhHHHHhhCCCCCEEEccCCCCccc-cH-hhcCCCCCCEEECCCCCCcC-hH-HhccCCCCCEEEeeCcc
Confidence 6666555555445555555555555555555 442 22 34555555555555555543 22 34444555555555554
Q ss_pred CC
Q 005040 297 LS 298 (717)
Q Consensus 297 ~~ 298 (717)
|.
T Consensus 193 i~ 194 (197)
T 4ezg_A 193 IG 194 (197)
T ss_dssp --
T ss_pred cC
Confidence 43
No 373
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=99.77 E-value=8.5e-18 Score=178.53 Aligned_cols=267 Identities=11% Similarity=0.135 Sum_probs=205.5
Q ss_pred CCCCCCEEEcccccccCccCCcccccccccccCccCCcEEeccCCCCcccCCcchhccccccceeeecCCcceecCCccc
Q 005040 34 NLRHLSVLSLMMNNLTTESSSADQWSFLSSLTNCRNLANLALASNPLGGILPPLIGNFSASLQNIYAFECKLGGSIPKEI 113 (717)
Q Consensus 34 ~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~l~~~L~~L~l~~n~l~~~~~~~~ 113 (717)
....++.+.+-+ .++.++..+ |.+. +|+.+.|..| ++.+...+|.. .+|+.+.+.+ .+..+...+|
T Consensus 111 ~~~~l~~i~ip~-~i~~I~~~a--------F~~~-~L~~i~l~~~-i~~I~~~aF~~--~~L~~i~lp~-~l~~I~~~aF 176 (401)
T 4fdw_A 111 ILKGYNEIILPN-SVKSIPKDA--------FRNS-QIAKVVLNEG-LKSIGDMAFFN--STVQEIVFPS-TLEQLKEDIF 176 (401)
T ss_dssp ECSSCSEEECCT-TCCEECTTT--------TTTC-CCSEEECCTT-CCEECTTTTTT--CCCCEEECCT-TCCEECSSTT
T ss_pred ecCCccEEEECC-ccCEehHhh--------cccC-CccEEEeCCC-ccEECHHhcCC--CCceEEEeCC-CccEehHHHh
Confidence 346677777743 466666554 5554 6888887766 66566666666 3578887775 6666777888
Q ss_pred cCCCCCcEEEccCCCCcccCCccccccCCCCEEeccCCcccccCCccccCCCCCCEEeccCCcCcccCCccccCCCCCCe
Q 005040 114 GNLRGLIVLSLGFNDLNGTIPTSIGTLQQLQGFYVPENNLQGYVPHDLCHLERLNILNLSGNKLSGAIPQCLASLTSLRS 193 (717)
Q Consensus 114 ~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~ 193 (717)
.++++|+.++|++|.++.+...+|. ..+|+.+.|..+ ++.+...+|.++++|+.+++..| ++.+...+|.+ .+|+.
T Consensus 177 ~~c~~L~~l~l~~n~l~~I~~~aF~-~~~L~~l~lp~~-l~~I~~~aF~~~~~L~~l~l~~~-l~~I~~~aF~~-~~L~~ 252 (401)
T 4fdw_A 177 YYCYNLKKADLSKTKITKLPASTFV-YAGIEEVLLPVT-LKEIGSQAFLKTSQLKTIEIPEN-VSTIGQEAFRE-SGITT 252 (401)
T ss_dssp TTCTTCCEEECTTSCCSEECTTTTT-TCCCSEEECCTT-CCEECTTTTTTCTTCCCEECCTT-CCEECTTTTTT-CCCSE
T ss_pred hCcccCCeeecCCCcceEechhhEe-ecccCEEEeCCc-hheehhhHhhCCCCCCEEecCCC-ccCcccccccc-CCccE
Confidence 8899999999998888877666776 588999998854 77788888889999999999875 56566777887 78999
Q ss_pred EEecCccccCCCChhhhcccCCCeEEccCCcCc-----ccCCccccCCCCCCeEEccCCCCCCCCcccccCCcccccccc
Q 005040 194 LYLQSNKLSSSLPSSLWSLEYILRINLSSNSLK-----GTLPSNIQKLNVLIDLDLSRNQLSSDIPSTIGTLKNLETLSL 268 (717)
Q Consensus 194 L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~-----~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l 268 (717)
+.| .|.++.+....|.++++|+.+.+.+|.+. .+....|.++++|+.++|. +.++.+....|.+|.+|+.+.|
T Consensus 253 i~l-p~~i~~I~~~aF~~c~~L~~l~l~~~~~~~~~~~~I~~~aF~~c~~L~~l~l~-~~i~~I~~~aF~~c~~L~~l~l 330 (401)
T 4fdw_A 253 VKL-PNGVTNIASRAFYYCPELAEVTTYGSTFNDDPEAMIHPYCLEGCPKLARFEIP-ESIRILGQGLLGGNRKVTQLTI 330 (401)
T ss_dssp EEE-ETTCCEECTTTTTTCTTCCEEEEESSCCCCCTTCEECTTTTTTCTTCCEECCC-TTCCEECTTTTTTCCSCCEEEE
T ss_pred EEe-CCCccEEChhHhhCCCCCCEEEeCCccccCCcccEECHHHhhCCccCCeEEeC-CceEEEhhhhhcCCCCccEEEE
Confidence 998 45566677788888999999998887765 4667788899999999998 4577777788888999999999
Q ss_pred cCccccCCCCccccccCccceEeccCCCCCCCCcccccccc-cccEEEccCCccc
Q 005040 269 AGNQFQGPIPESVGNLISLESLDFSNNNLSGKIPKSLEALS-HLKQFNVSHNRLE 322 (717)
Q Consensus 269 ~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~~~~~~~~~~l~-~L~~L~l~~N~l~ 322 (717)
..| ++.+...+|.++ +|+.+++.+|.+....+..|.+++ +++.|++..+.+.
T Consensus 331 p~~-l~~I~~~aF~~~-~L~~l~l~~n~~~~l~~~~F~~~~~~l~~l~vp~~~~~ 383 (401)
T 4fdw_A 331 PAN-VTQINFSAFNNT-GIKEVKVEGTTPPQVFEKVWYGFPDDITVIRVPAESVE 383 (401)
T ss_dssp CTT-CCEECTTSSSSS-CCCEEEECCSSCCBCCCSSCCCSCTTCCEEEECGGGHH
T ss_pred Ccc-ccEEcHHhCCCC-CCCEEEEcCCCCcccccccccCCCCCccEEEeCHHHHH
Confidence 655 666777888888 899999999888877777788774 6788888776643
No 374
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.77 E-value=2.2e-19 Score=205.78 Aligned_cols=189 Identities=21% Similarity=0.200 Sum_probs=105.4
Q ss_pred EccCCCCcccCCccccccCCCCEEeccCCcccccCCccccCCCCCCEEeccCCcCcccCCccccCCCCCCeEEecCcccc
Q 005040 123 SLGFNDLNGTIPTSIGTLQQLQGFYVPENNLQGYVPHDLCHLERLNILNLSGNKLSGAIPQCLASLTSLRSLYLQSNKLS 202 (717)
Q Consensus 123 ~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~ 202 (717)
+++.|.+. ..++.|..+++|+.|+|++|.+. .+|..+.++++|++|+|++|.|+ .+|..|+++++|+.|+|++|+|+
T Consensus 207 ~~~~n~~~-~~~~~~~~l~~L~~L~Ls~n~l~-~l~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~ 283 (727)
T 4b8c_D 207 DDIENRMV-MPKDSKYDDQLWHALDLSNLQIF-NISANIFKYDFLTRLYLNGNSLT-ELPAEIKNLSNLRVLDLSHNRLT 283 (727)
T ss_dssp ----------------CCCCCCEEECTTSCCS-CCCGGGGGCCSCSCCBCTTSCCS-CCCGGGGGGTTCCEEECTTSCCS
T ss_pred ccccccee-cChhhhccCCCCcEEECCCCCCC-CCChhhcCCCCCCEEEeeCCcCc-ccChhhhCCCCCCEEeCcCCcCC
Confidence 44455555 55667777777777777777777 44555557778888888888887 66777788888888888888887
Q ss_pred CCCChhhhcccCCCeEEccCCcCcccCCccccCCCCCCeEEccCCCCCCCCcccccCCc-ccccccccCccccCCCCccc
Q 005040 203 SSLPSSLWSLEYILRINLSSNSLKGTLPSNIQKLNVLIDLDLSRNQLSSDIPSTIGTLK-NLETLSLAGNQFQGPIPESV 281 (717)
Q Consensus 203 ~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~-~L~~L~l~~N~l~~~~~~~~ 281 (717)
.+|..|.++++|++|+|++|.|+ .+|..|..+++|+.|+|++|.|++.+|..+..+. .+..|+|++|.+++.+|.
T Consensus 284 -~lp~~~~~l~~L~~L~L~~N~l~-~lp~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~~~~~~~l~l~~N~l~~~~p~-- 359 (727)
T 4b8c_D 284 -SLPAELGSCFQLKYFYFFDNMVT-TLPWEFGNLCNLQFLGVEGNPLEKQFLKILTEKSVTGLIFYLRDNRPEIPLPH-- 359 (727)
T ss_dssp -SCCSSGGGGTTCSEEECCSSCCC-CCCSSTTSCTTCCCEECTTSCCCSHHHHHHHHHHHHHHHHHHHHCCCCCCCCC--
T ss_pred -ccChhhcCCCCCCEEECCCCCCC-ccChhhhcCCCccEEeCCCCccCCCChHHHhhcchhhhHHhhccCcccCcCcc--
Confidence 56777888888888888888887 5677788888888888888888877777765543 233477888888877765
Q ss_pred cccCccceEeccCC--------CCCCCCcccccccccccEEEccCCccc
Q 005040 282 GNLISLESLDFSNN--------NLSGKIPKSLEALSHLKQFNVSHNRLE 322 (717)
Q Consensus 282 ~~l~~L~~L~L~~N--------~~~~~~~~~~~~l~~L~~L~l~~N~l~ 322 (717)
.|+.|+++.| .+.+..+..+..+..+....++.|-++
T Consensus 360 ----~l~~l~l~~n~~~~~~~~~l~~~~~~~~~~l~~~~~~~ls~Nil~ 404 (727)
T 4b8c_D 360 ----ERRFIEINTDGEPQREYDSLQQSTEHLATDLAKRTFTVLSYNTLC 404 (727)
T ss_dssp ----C-----------------------------------------CCC
T ss_pred ----ccceeEeecccccccccCCccccccchhhcccccceeeeeccccc
Confidence 3455566666 233333344445555555566666554
No 375
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.77 E-value=8.4e-20 Score=209.29 Aligned_cols=187 Identities=20% Similarity=0.244 Sum_probs=107.7
Q ss_pred cCCcceecCCccccCCCCCcEEEccCCCCcccCCccccccCCCCEEeccCCcccccCCccccCCCCCCEEeccCCcCccc
Q 005040 101 FECKLGGSIPKEIGNLRGLIVLSLGFNDLNGTIPTSIGTLQQLQGFYVPENNLQGYVPHDLCHLERLNILNLSGNKLSGA 180 (717)
Q Consensus 101 ~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~ 180 (717)
..|++. ..+..|..+++|+.|+|++|.+. .+|..+.++++|++|+|++|.|+ .+|..|.++++|++|+|++|.|+ .
T Consensus 209 ~~n~~~-~~~~~~~~l~~L~~L~Ls~n~l~-~l~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~-~ 284 (727)
T 4b8c_D 209 IENRMV-MPKDSKYDDQLWHALDLSNLQIF-NISANIFKYDFLTRLYLNGNSLT-ELPAEIKNLSNLRVLDLSHNRLT-S 284 (727)
T ss_dssp --------------CCCCCCEEECTTSCCS-CCCGGGGGCCSCSCCBCTTSCCS-CCCGGGGGGTTCCEEECTTSCCS-S
T ss_pred ccccee-cChhhhccCCCCcEEECCCCCCC-CCChhhcCCCCCCEEEeeCCcCc-ccChhhhCCCCCCEEeCcCCcCC-c
Confidence 334444 55677788888888888888887 55666668888888888888888 66777888888888888888888 5
Q ss_pred CCccccCCCCCCeEEecCccccCCCChhhhcccCCCeEEccCCcCcccCCccccCCCC-CCeEEccCCCCCCCCcccccC
Q 005040 181 IPQCLASLTSLRSLYLQSNKLSSSLPSSLWSLEYILRINLSSNSLKGTLPSNIQKLNV-LIDLDLSRNQLSSDIPSTIGT 259 (717)
Q Consensus 181 ~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~-L~~L~l~~N~l~~~~~~~~~~ 259 (717)
+|..|+++++|++|+|++|.|+ .+|..|..+++|+.|+|++|.|++.+|..+..+.. +..|+|++|.+++.+|.
T Consensus 285 lp~~~~~l~~L~~L~L~~N~l~-~lp~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~~~~~~~l~l~~N~l~~~~p~---- 359 (727)
T 4b8c_D 285 LPAELGSCFQLKYFYFFDNMVT-TLPWEFGNLCNLQFLGVEGNPLEKQFLKILTEKSVTGLIFYLRDNRPEIPLPH---- 359 (727)
T ss_dssp CCSSGGGGTTCSEEECCSSCCC-CCCSSTTSCTTCCCEECTTSCCCSHHHHHHHHHHHHHHHHHHHHCCCCCCCCC----
T ss_pred cChhhcCCCCCCEEECCCCCCC-ccChhhhcCCCccEEeCCCCccCCCChHHHhhcchhhhHHhhccCcccCcCcc----
Confidence 6777888888888888888887 56667888888888888888888777776655422 23467888888876665
Q ss_pred CcccccccccCc--------cccCCCCccccccCccceEeccCCCCC
Q 005040 260 LKNLETLSLAGN--------QFQGPIPESVGNLISLESLDFSNNNLS 298 (717)
Q Consensus 260 l~~L~~L~l~~N--------~l~~~~~~~~~~l~~L~~L~L~~N~~~ 298 (717)
.|+.|+++.| .+.+..+..+.++.++....+++|.+.
T Consensus 360 --~l~~l~l~~n~~~~~~~~~l~~~~~~~~~~l~~~~~~~ls~Nil~ 404 (727)
T 4b8c_D 360 --ERRFIEINTDGEPQREYDSLQQSTEHLATDLAKRTFTVLSYNTLC 404 (727)
T ss_dssp --C-----------------------------------------CCC
T ss_pred --ccceeEeecccccccccCCccccccchhhcccccceeeeeccccc
Confidence 3455566666 333333444455566666777777664
No 376
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.77 E-value=7.8e-19 Score=167.23 Aligned_cols=128 Identities=25% Similarity=0.370 Sum_probs=62.2
Q ss_pred CEEeccCCcCcccCCccccCCCCCCeEEecCccccCCCCh-hhhcccCCCeEEccCCcCcccCCccccCCCCCCeEEccC
Q 005040 168 NILNLSGNKLSGAIPQCLASLTSLRSLYLQSNKLSSSLPS-SLWSLEYILRINLSSNSLKGTLPSNIQKLNVLIDLDLSR 246 (717)
Q Consensus 168 ~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~-~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~ 246 (717)
++|++++|+++ .+|..+. .+|++|+|++|++++..+. .|..+++|++|+|++|.|++..|..|.++++|++|+|++
T Consensus 11 ~~l~~s~~~l~-~ip~~~~--~~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~ 87 (192)
T 1w8a_A 11 TTVDCTGRGLK-EIPRDIP--LHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGE 87 (192)
T ss_dssp TEEECTTSCCS-SCCSCCC--TTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCS
T ss_pred CEEEcCCCCcC-cCccCCC--CCCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEECCC
Confidence 45666666665 3443332 2555555555555544332 244555555555555555544444555555555555555
Q ss_pred CCCCCCCcccccCCcccccccccCccccCCCCccccccCccceEeccCCCCC
Q 005040 247 NQLSSDIPSTIGTLKNLETLSLAGNQFQGPIPESVGNLISLESLDFSNNNLS 298 (717)
Q Consensus 247 N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~ 298 (717)
|.|++..+..|..+++|++|+|++|++++..|..+..+++|++|+|++|++.
T Consensus 88 N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~ 139 (192)
T 1w8a_A 88 NKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFN 139 (192)
T ss_dssp CCCCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTCCBC
T ss_pred CcCCccCHHHhcCCCCCCEEECCCCcCCeeCHHHhhcCCCCCEEEeCCCCcc
Confidence 5554444444444444444444444444444444444444444444444444
No 377
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=99.77 E-value=1.6e-17 Score=176.45 Aligned_cols=267 Identities=11% Similarity=0.093 Sum_probs=212.9
Q ss_pred CCCCCcEEECCCCcceecCCcCCCCCCCCCEEEcccccccCccCCcccccccccccCccCCcEEeccCCCCcccCCcchh
Q 005040 10 NATKLIGLDLGLNSFSGHIPNTFGNLRHLSVLSLMMNNLTTESSSADQWSFLSSLTNCRNLANLALASNPLGGILPPLIG 89 (717)
Q Consensus 10 ~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~ 89 (717)
....++.+.+.++ ++.+...+|.+. +|+.+.|..| ++.+...+ |.+ .+|+.+.|.. .++.+...+|.
T Consensus 111 ~~~~l~~i~ip~~-i~~I~~~aF~~~-~L~~i~l~~~-i~~I~~~a--------F~~-~~L~~i~lp~-~l~~I~~~aF~ 177 (401)
T 4fdw_A 111 ILKGYNEIILPNS-VKSIPKDAFRNS-QIAKVVLNEG-LKSIGDMA--------FFN-STVQEIVFPS-TLEQLKEDIFY 177 (401)
T ss_dssp ECSSCSEEECCTT-CCEECTTTTTTC-CCSEEECCTT-CCEECTTT--------TTT-CCCCEEECCT-TCCEECSSTTT
T ss_pred ecCCccEEEECCc-cCEehHhhcccC-CccEEEeCCC-ccEECHHh--------cCC-CCceEEEeCC-CccEehHHHhh
Confidence 3466777777764 666788888884 7888888766 88877665 556 3688888885 67767777777
Q ss_pred ccccccceeeecCCcceecCCccccCCCCCcEEEccCCCCcccCCccccccCCCCEEeccCCcccccCCccccCCCCCCE
Q 005040 90 NFSASLQNIYAFECKLGGSIPKEIGNLRGLIVLSLGFNDLNGTIPTSIGTLQQLQGFYVPENNLQGYVPHDLCHLERLNI 169 (717)
Q Consensus 90 ~l~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~ 169 (717)
.. .+|+.+++.+|++..+....|. ..+|+.+.|.++ ++.+...+|.++++|+.+++..| ++.+...+|.+ .+|+.
T Consensus 178 ~c-~~L~~l~l~~n~l~~I~~~aF~-~~~L~~l~lp~~-l~~I~~~aF~~~~~L~~l~l~~~-l~~I~~~aF~~-~~L~~ 252 (401)
T 4fdw_A 178 YC-YNLKKADLSKTKITKLPASTFV-YAGIEEVLLPVT-LKEIGSQAFLKTSQLKTIEIPEN-VSTIGQEAFRE-SGITT 252 (401)
T ss_dssp TC-TTCCEEECTTSCCSEECTTTTT-TCCCSEEECCTT-CCEECTTTTTTCTTCCCEECCTT-CCEECTTTTTT-CCCSE
T ss_pred Cc-ccCCeeecCCCcceEechhhEe-ecccCEEEeCCc-hheehhhHhhCCCCCCEEecCCC-ccCcccccccc-CCccE
Confidence 76 6788899988888877777777 588999999854 77677888999999999999875 66677788888 78999
Q ss_pred EeccCCcCcccCCccccCCCCCCeEEecCcccc-----CCCChhhhcccCCCeEEccCCcCcccCCccccCCCCCCeEEc
Q 005040 170 LNLSGNKLSGAIPQCLASLTSLRSLYLQSNKLS-----SSLPSSLWSLEYILRINLSSNSLKGTLPSNIQKLNVLIDLDL 244 (717)
Q Consensus 170 L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~-----~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l 244 (717)
+.| .+.++.+...+|.++++|+.+++.+|.+. .+.+..|.++++|+.+.|. +.++.+...+|.++++|+.+.|
T Consensus 253 i~l-p~~i~~I~~~aF~~c~~L~~l~l~~~~~~~~~~~~I~~~aF~~c~~L~~l~l~-~~i~~I~~~aF~~c~~L~~l~l 330 (401)
T 4fdw_A 253 VKL-PNGVTNIASRAFYYCPELAEVTTYGSTFNDDPEAMIHPYCLEGCPKLARFEIP-ESIRILGQGLLGGNRKVTQLTI 330 (401)
T ss_dssp EEE-ETTCCEECTTTTTTCTTCCEEEEESSCCCCCTTCEECTTTTTTCTTCCEECCC-TTCCEECTTTTTTCCSCCEEEE
T ss_pred EEe-CCCccEEChhHhhCCCCCCEEEeCCccccCCcccEECHHHhhCCccCCeEEeC-CceEEEhhhhhcCCCCccEEEE
Confidence 999 45677677788999999999999888775 4667789999999999998 4588777889999999999999
Q ss_pred cCCCCCCCCcccccCCcccccccccCccccCCCCccccccC-ccceEeccCCCCC
Q 005040 245 SRNQLSSDIPSTIGTLKNLETLSLAGNQFQGPIPESVGNLI-SLESLDFSNNNLS 298 (717)
Q Consensus 245 ~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~-~L~~L~L~~N~~~ 298 (717)
..| ++.+...+|.++ +|+.|++++|.+.......|.+++ +++.|++..+.+.
T Consensus 331 p~~-l~~I~~~aF~~~-~L~~l~l~~n~~~~l~~~~F~~~~~~l~~l~vp~~~~~ 383 (401)
T 4fdw_A 331 PAN-VTQINFSAFNNT-GIKEVKVEGTTPPQVFEKVWYGFPDDITVIRVPAESVE 383 (401)
T ss_dssp CTT-CCEECTTSSSSS-CCCEEEECCSSCCBCCCSSCCCSCTTCCEEEECGGGHH
T ss_pred Ccc-ccEEcHHhCCCC-CCCEEEEcCCCCcccccccccCCCCCccEEEeCHHHHH
Confidence 655 776777889999 999999999988877777888874 6888888777654
No 378
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=99.76 E-value=1.2e-18 Score=181.21 Aligned_cols=263 Identities=16% Similarity=0.116 Sum_probs=197.6
Q ss_pred CCCCcEEECCCCcce--ecCCcCCCCCCCCCEEEcccccccCccCCcccccccccccC--------ccCCcEEeccCCCC
Q 005040 11 ATKLIGLDLGLNSFS--GHIPNTFGNLRHLSVLSLMMNNLTTESSSADQWSFLSSLTN--------CRNLANLALASNPL 80 (717)
Q Consensus 11 l~~L~~L~L~~n~i~--~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~l~~--------l~~L~~L~L~~N~l 80 (717)
+++|+.|||++|+|. ......+. .++.+.+..|.| +..+ |.+ +++|++|+|.+ .+
T Consensus 48 l~~L~~LdLs~n~i~~~~~~~~~~~---~~~~~~~~~~~I---~~~a--------F~~~~~~~~~g~~~L~~l~L~~-~i 112 (329)
T 3sb4_A 48 FPSLKVLDISNAEIKMYSGKAGTYP---NGKFYIYMANFV---PAYA--------FSNVVNGVTKGKQTLEKVILSE-KI 112 (329)
T ss_dssp CTTCCEEEEEEEEECCEEESSSSSG---GGCCEEECTTEE---CTTT--------TEEEETTEEEECTTCCC-CBCT-TC
T ss_pred hccCeEEecCcceeEEecCcccccc---cccccccccccc---CHHH--------hcccccccccccCCCcEEECCc-cc
Confidence 788999999999998 44443333 356677777744 4343 667 99999999999 88
Q ss_pred cccCCcchhccccccceeeecCCcceecCCccccCCCCCcEEEccCC----CCcccCCccccccCCCC-EEeccCCcc-c
Q 005040 81 GGILPPLIGNFSASLQNIYAFECKLGGSIPKEIGNLRGLIVLSLGFN----DLNGTIPTSIGTLQQLQ-GFYVPENNL-Q 154 (717)
Q Consensus 81 ~~~~~~~~~~l~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n----~l~~~~~~~~~~l~~L~-~L~l~~n~i-~ 154 (717)
+.+...+|... ++|+.|++.+|.+..+.+.+|.++.++..+.+..+ ........+|.++.+|+ .+.+....- .
T Consensus 113 ~~I~~~aF~~~-~~L~~l~l~~n~i~~i~~~aF~~~~~l~~l~~~~~~~~~~~~~i~~~~f~~~~~L~~~i~~~~~~~l~ 191 (329)
T 3sb4_A 113 KNIEDAAFKGC-DNLKICQIRKKTAPNLLPEALADSVTAIFIPLGSSDAYRFKNRWEHFAFIEGEPLETTIQVGAMGKLE 191 (329)
T ss_dssp CEECTTTTTTC-TTCCEEEBCCSSCCEECTTSSCTTTCEEEECTTCTHHHHTSTTTTTSCEEESCCCEEEEEECTTCCHH
T ss_pred cchhHHHhhcC-cccceEEcCCCCccccchhhhcCCCceEEecCcchhhhhccccccccccccccccceeEEecCCCcHH
Confidence 87777888777 67999999999998888899999888888877763 23334556777888887 555543321 1
Q ss_pred ccCCccccCCCCCCEEeccCCcCcccCCccc-cCCCCCCeEEecCccccCCCChhhhcccCCCeEEccCCcCcccCCccc
Q 005040 155 GYVPHDLCHLERLNILNLSGNKLSGAIPQCL-ASLTSLRSLYLQSNKLSSSLPSSLWSLEYILRINLSSNSLKGTLPSNI 233 (717)
Q Consensus 155 ~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~-~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~ 233 (717)
......-....++..+.+.++-.. .....+ ..+++|+.|+|++|+++.+.+..|.++.+|+.|+|++| ++.+.+.+|
T Consensus 192 ~~~~~~~~~~~~~~~l~~~~~l~~-~~~~~l~~~~~~L~~l~L~~n~i~~I~~~aF~~~~~L~~l~l~~n-i~~I~~~aF 269 (329)
T 3sb4_A 192 DEIMKAGLQPRDINFLTIEGKLDN-ADFKLIRDYMPNLVSLDISKTNATTIPDFTFAQKKYLLKIKLPHN-LKTIGQRVF 269 (329)
T ss_dssp HHHHHTTCCGGGCSEEEEEECCCH-HHHHHHHHHCTTCCEEECTTBCCCEECTTTTTTCTTCCEEECCTT-CCEECTTTT
T ss_pred HHHhhcccCccccceEEEeeeecH-HHHHHHHHhcCCCeEEECCCCCcceecHhhhhCCCCCCEEECCcc-cceehHHHh
Confidence 111111123456777877765333 222222 24789999999999999887888999999999999998 887888899
Q ss_pred cCCCCCC-eEEccCCCCCCCCcccccCCcccccccccCccccCCCCccccccCccceEec
Q 005040 234 QKLNVLI-DLDLSRNQLSSDIPSTIGTLKNLETLSLAGNQFQGPIPESVGNLISLESLDF 292 (717)
Q Consensus 234 ~~l~~L~-~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~L 292 (717)
.++.+|+ .+++.+ .++.+.+..|.+|++|+.|++++|.+..+.+.+|.++++|+.++.
T Consensus 270 ~~~~~L~~~l~l~~-~l~~I~~~aF~~c~~L~~l~l~~n~i~~I~~~aF~~~~~L~~ly~ 328 (329)
T 3sb4_A 270 SNCGRLAGTLELPA-SVTAIEFGAFMGCDNLRYVLATGDKITTLGDELFGNGVPSKLIYK 328 (329)
T ss_dssp TTCTTCCEEEEECT-TCCEECTTTTTTCTTEEEEEECSSCCCEECTTTTCTTCCCCEEEC
T ss_pred hCChhccEEEEEcc-cceEEchhhhhCCccCCEEEeCCCccCccchhhhcCCcchhhhcc
Confidence 9999999 999988 787777889999999999999999999888889999999998874
No 379
>1zth_A RIO1 serine protein kinase; ribosome biogenesis, rRNA, ADP, manganese, transferase; HET: ADP; 1.89A {Archaeoglobus fulgidus} PDB: 1zp9_A* 1ztf_A*
Probab=99.75 E-value=1.9e-18 Score=172.75 Aligned_cols=138 Identities=22% Similarity=0.263 Sum_probs=106.8
Q ss_pred cCCccccccccccEEEEEEEe-cCCCe--EEEEEechhhH------------------------HHHHHHHHHHHHHHhc
Q 005040 428 EFNECNLLGTGGFGSVYKGTL-SDGTN--VAIKIFNLQLE------------------------RAFRSFDSECEILRNV 480 (717)
Q Consensus 428 ~~~~~~~lg~G~~g~V~~~~~-~~~~~--vavK~~~~~~~------------------------~~~~~~~~e~~~l~~l 480 (717)
-|++.+.||+|+||.||+|.. .+|+. ||||+++.... .....+.+|+++++.+
T Consensus 48 ~~~i~~~ig~G~~g~Vy~a~~~~~g~~~~vAvK~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l 127 (258)
T 1zth_A 48 ITAMGGVISTGKEANVFYADGVFDGKPVAMAVKIYRIETSEFDKMDEYLYGDERFDMRRISPKEKVFIWTEKEFRNLERA 127 (258)
T ss_dssp EEEEEEEEEECSSEEEEEEEEEETTEEEEEEEEEECCC-------GGGTTTCTTSCC----CHHHHHHHHHHHHHHHHHH
T ss_pred chhhCCEEeecceEEEEEEEEcCCCcEeeEEEEEEECCccchhhHHHhhcccchhhhhccChHHHHHHHHHHHHHHHHHH
Confidence 356778999999999999998 68989 99998753311 1123578899999999
Q ss_pred CCCce--eeEeeeeecCCeeEEEEEccCC-C----CHHHHHhhCCCCCCHHHHHHHHHHHHHHHHHHhhcCCCCCeEecC
Q 005040 481 RHRNL--LKILGSCSNLDFKALVLEFMPN-G----SLEKWLYSHNYFLDILQRLNIMIDVGSALEYLHHCHSSAPIIHCD 553 (717)
Q Consensus 481 ~hpni--v~~~~~~~~~~~~~lv~e~~~~-g----~L~~~l~~~~~~~~~~~~~~i~~~i~~~l~~LH~~~~~~~ivH~d 553 (717)
+|+++ ...+++ ...++||||+.+ | +|.++... .++..+..++.|++.||.|||. +.+|+|||
T Consensus 128 ~~~~i~~p~~~~~----~~~~lVmE~~g~~g~~~~~L~~~~~~----~~~~~~~~i~~qi~~~l~~lH~---~~givHrD 196 (258)
T 1zth_A 128 KEAGVSVPQPYTY----MKNVLLMEFIGEDELPAPTLVELGRE----LKELDVEGIFNDVVENVKRLYQ---EAELVHAD 196 (258)
T ss_dssp HHTTCCCCCEEEE----ETTEEEEECCEETTEECCBHHHHGGG----GGGSCHHHHHHHHHHHHHHHHH---TSCEECSS
T ss_pred HhCCCCCCeEEEc----CCCEEEEEecCCCCCccccHHHHhhc----cChHHHHHHHHHHHHHHHHHHH---HCCEEeCC
Confidence 88754 344432 356899999942 3 77776543 2244567899999999999994 35899999
Q ss_pred CCCCCeeeCCCCcEEEeeecccccc
Q 005040 554 LKPTNILLDENMVAHVSDFGISKLL 578 (717)
Q Consensus 554 lk~~Nill~~~~~~kl~Dfgl~~~~ 578 (717)
|||+|||++. .++|+|||++...
T Consensus 197 lkp~NILl~~--~~~liDFG~a~~~ 219 (258)
T 1zth_A 197 LSEYNIMYID--KVYFIDMGQAVTL 219 (258)
T ss_dssp CSTTSEEESS--SEEECCCTTCEET
T ss_pred CCHHHEEEcC--cEEEEECcccccC
Confidence 9999999998 9999999999764
No 380
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.73 E-value=1.4e-17 Score=158.61 Aligned_cols=133 Identities=22% Similarity=0.309 Sum_probs=70.3
Q ss_pred CeEEecCccccCCCChhhhcccCCCeEEccCCcCcccCCc-cccCCCCCCeEEccCCCCCCCCcccccCCcccccccccC
Q 005040 192 RSLYLQSNKLSSSLPSSLWSLEYILRINLSSNSLKGTLPS-NIQKLNVLIDLDLSRNQLSSDIPSTIGTLKNLETLSLAG 270 (717)
Q Consensus 192 ~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~-~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~ 270 (717)
+.+++++|.++ .+|..+. .+|++|++++|.|++..+. .|..+++|+.|+|++|.|++..|..|..+++|++|+|++
T Consensus 11 ~~l~~s~~~l~-~ip~~~~--~~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~ 87 (192)
T 1w8a_A 11 TTVDCTGRGLK-EIPRDIP--LHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGE 87 (192)
T ss_dssp TEEECTTSCCS-SCCSCCC--TTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCS
T ss_pred CEEEcCCCCcC-cCccCCC--CCCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEECCC
Confidence 44555555554 3333322 1555555555555544332 255555555555555555555555555555555555555
Q ss_pred ccccCCCCccccccCccceEeccCCCCCCCCcccccccccccEEEccCCcccccccc
Q 005040 271 NQFQGPIPESVGNLISLESLDFSNNNLSGKIPKSLEALSHLKQFNVSHNRLEGEIPV 327 (717)
Q Consensus 271 N~l~~~~~~~~~~l~~L~~L~L~~N~~~~~~~~~~~~l~~L~~L~l~~N~l~~~~p~ 327 (717)
|+|++..+..|.++++|++|+|++|++++..|..+..+++|+.|+|++|++++.++.
T Consensus 88 N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c~c~l 144 (192)
T 1w8a_A 88 NKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFNCNCHL 144 (192)
T ss_dssp CCCCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTCCBCCSGGG
T ss_pred CcCCccCHHHhcCCCCCCEEECCCCcCCeeCHHHhhcCCCCCEEEeCCCCccCcCcc
Confidence 555555555555555555555555555555555555555555555555555555443
No 381
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.73 E-value=1.1e-17 Score=159.28 Aligned_cols=132 Identities=22% Similarity=0.310 Sum_probs=84.4
Q ss_pred eEEecCccccCCCChhhhcccCCCeEEccCCcCcccCCccccCCCCCCeEEccCCCCCCCCcccccCCcccccccccCcc
Q 005040 193 SLYLQSNKLSSSLPSSLWSLEYILRINLSSNSLKGTLPSNIQKLNVLIDLDLSRNQLSSDIPSTIGTLKNLETLSLAGNQ 272 (717)
Q Consensus 193 ~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~ 272 (717)
.+++++|.++ .+|..+ .++|++|+|++|.|+ .+|..|.++++|+.|+|++|.|++..+..|..+++|++|+|++|+
T Consensus 14 ~l~~~~~~l~-~ip~~~--~~~l~~L~L~~n~i~-~ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~ 89 (193)
T 2wfh_A 14 VVRCSNKGLK-VLPKGI--PRDVTELYLDGNQFT-LVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNR 89 (193)
T ss_dssp EEECTTSCCS-SCCSCC--CTTCCEEECCSSCCC-SCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred EEEcCCCCCC-cCCCCC--CCCCCEEECCCCcCc-hhHHHhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCCCc
Confidence 3444444444 223222 134555555555555 444556666666666666666666555666666667777777777
Q ss_pred ccCCCCccccccCccceEeccCCCCCCCCcccccccccccEEEccCCccccccccc
Q 005040 273 FQGPIPESVGNLISLESLDFSNNNLSGKIPKSLEALSHLKQFNVSHNRLEGEIPVK 328 (717)
Q Consensus 273 l~~~~~~~~~~l~~L~~L~L~~N~~~~~~~~~~~~l~~L~~L~l~~N~l~~~~p~~ 328 (717)
|++..+..|.++++|+.|+|++|+|+...+..|..+++|+.|+|++|++.+.+...
T Consensus 90 l~~i~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~C~c~l~ 145 (193)
T 2wfh_A 90 LRCIPPRTFDGLKSLRLLSLHGNDISVVPEGAFNDLSALSHLAIGANPLYCDCNMQ 145 (193)
T ss_dssp CCBCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECCSSCEECSGGGH
T ss_pred cCEeCHHHhCCCCCCCEEECCCCCCCeeChhhhhcCccccEEEeCCCCeecCCcCH
Confidence 76666666777777777777777777666666777888888888888887766543
No 382
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.69 E-value=6.4e-17 Score=150.47 Aligned_cols=132 Identities=23% Similarity=0.205 Sum_probs=65.6
Q ss_pred CCCcEEEccCCCCc-ccCCccccccCCCCEEeccCCcccccCCccccCCCCCCEEeccCCcCcccCCccccCCCCCCeEE
Q 005040 117 RGLIVLSLGFNDLN-GTIPTSIGTLQQLQGFYVPENNLQGYVPHDLCHLERLNILNLSGNKLSGAIPQCLASLTSLRSLY 195 (717)
Q Consensus 117 ~~L~~L~L~~n~l~-~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ 195 (717)
++|++|+|++|.++ +.+|..+..+++|+.|++++|.+++. ..+..+++|++|+|++|++++.+|..+..+++|+.|+
T Consensus 24 ~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~ 101 (168)
T 2ell_A 24 AAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISV--SNLPKLPKLKKLELSENRIFGGLDMLAEKLPNLTHLN 101 (168)
T ss_dssp TSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSCCCCC--SSCCCCSSCCEEEEESCCCCSCCCHHHHHCTTCCEEE
T ss_pred ccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCCCCCh--hhhccCCCCCEEECcCCcCchHHHHHHhhCCCCCEEe
Confidence 45556666666555 34444555555555555555555543 4455555555555555555544444444455555555
Q ss_pred ecCccccCCC-ChhhhcccCCCeEEccCCcCcccCC---ccccCCCCCCeEEccCCCCC
Q 005040 196 LQSNKLSSSL-PSSLWSLEYILRINLSSNSLKGTLP---SNIQKLNVLIDLDLSRNQLS 250 (717)
Q Consensus 196 L~~N~l~~~~-~~~~~~l~~L~~L~l~~N~l~~~~~---~~~~~l~~L~~L~l~~N~l~ 250 (717)
|++|++++.. +..+..+++|+.|++++|.+++..+ ..+..+++|+.|++++|.+.
T Consensus 102 Ls~N~l~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~~n~~~ 160 (168)
T 2ell_A 102 LSGNKLKDISTLEPLKKLECLKSLDLFNCEVTNLNDYRESVFKLLPQLTYLDGYDREDQ 160 (168)
T ss_dssp CBSSSCCSSGGGGGGSSCSCCCEEECCSSGGGTSTTHHHHHHTTCSSCCEETTEETTSC
T ss_pred ccCCccCcchhHHHHhcCCCCCEEEeeCCcCcchHHHHHHHHHhCccCcEecCCCCChh
Confidence 5555554321 1344444444444444444443222 23444444444444444444
No 383
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.69 E-value=6.5e-17 Score=150.43 Aligned_cols=132 Identities=23% Similarity=0.224 Sum_probs=70.0
Q ss_pred CCCCEEeccCCccc-ccCCccccCCCCCCEEeccCCcCcccCCccccCCCCCCeEEecCccccCCCChhhhcccCCCeEE
Q 005040 141 QQLQGFYVPENNLQ-GYVPHDLCHLERLNILNLSGNKLSGAIPQCLASLTSLRSLYLQSNKLSSSLPSSLWSLEYILRIN 219 (717)
Q Consensus 141 ~~L~~L~l~~n~i~-~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~ 219 (717)
++|++|++++|.++ +.+|..+..+++|++|+|++|.+++. ..+..+++|++|+|++|++++.+|..+..+++|++|+
T Consensus 24 ~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~ 101 (168)
T 2ell_A 24 AAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISV--SNLPKLPKLKKLELSENRIFGGLDMLAEKLPNLTHLN 101 (168)
T ss_dssp TSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSCCCCC--SSCCCCSSCCEEEEESCCCCSCCCHHHHHCTTCCEEE
T ss_pred ccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCCCCCh--hhhccCCCCCEEECcCCcCchHHHHHHhhCCCCCEEe
Confidence 55666666666665 34454555556666666666665543 4455555666666666665544555555555555555
Q ss_pred ccCCcCcccC-CccccCCCCCCeEEccCCCCCCCCc---ccccCCcccccccccCcccc
Q 005040 220 LSSNSLKGTL-PSNIQKLNVLIDLDLSRNQLSSDIP---STIGTLKNLETLSLAGNQFQ 274 (717)
Q Consensus 220 l~~N~l~~~~-~~~~~~l~~L~~L~l~~N~l~~~~~---~~~~~l~~L~~L~l~~N~l~ 274 (717)
|++|.|++.. +..+..+++|+.|++++|.+++..+ ..+..+++|++|++++|.+.
T Consensus 102 Ls~N~l~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~~n~~~ 160 (168)
T 2ell_A 102 LSGNKLKDISTLEPLKKLECLKSLDLFNCEVTNLNDYRESVFKLLPQLTYLDGYDREDQ 160 (168)
T ss_dssp CBSSSCCSSGGGGGGSSCSCCCEEECCSSGGGTSTTHHHHHHTTCSSCCEETTEETTSC
T ss_pred ccCCccCcchhHHHHhcCCCCCEEEeeCCcCcchHHHHHHHHHhCccCcEecCCCCChh
Confidence 5555555321 1344555555555555555554332 24444555555555555444
No 384
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=99.67 E-value=1.7e-15 Score=161.60 Aligned_cols=291 Identities=13% Similarity=0.090 Sum_probs=186.3
Q ss_pred ccccCCCCCcEEECCCCcceecCCcCCCCCCCCCEEEcccccccCccCCcccccccccccCccCCcEEeccCCCCcccCC
Q 005040 6 NSITNATKLIGLDLGLNSFSGHIPNTFGNLRHLSVLSLMMNNLTTESSSADQWSFLSSLTNCRNLANLALASNPLGGILP 85 (717)
Q Consensus 6 ~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~l~~l~~L~~L~L~~N~l~~~~~ 85 (717)
.+|.++++|+.+.|..+ ++.+...+|.++++|+.++|..+ ++.+...+ |.++.+|+.+.+..+ +..+..
T Consensus 65 ~AF~~c~~L~~i~lp~~-i~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~a--------F~~c~~L~~i~~p~~-l~~i~~ 133 (394)
T 4fs7_A 65 AAFQGCRKVTEIKIPST-VREIGEFAFENCSKLEIINIPDS-VKMIGRCT--------FSGCYALKSILLPLM-LKSIGV 133 (394)
T ss_dssp TTTTTCTTEEEEECCTT-CCEECTTTTTTCTTCCEECCCTT-CCEECTTT--------TTTCTTCCCCCCCTT-CCEECT
T ss_pred HHhhCCCCceEEEeCCC-ccCcchhHhhCCCCCcEEEeCCC-ceEccchh--------hcccccchhhcccCc-eeeecc
Confidence 35778899999999754 77788889999999999999755 77777655 788888888877655 444555
Q ss_pred cchhccccccceeeecCCcceecCCccccCCCCCcEEEccCCCCcccCCccccccCCCCEEeccCCcccccCCccccCCC
Q 005040 86 PLIGNFSASLQNIYAFECKLGGSIPKEIGNLRGLIVLSLGFNDLNGTIPTSIGTLQQLQGFYVPENNLQGYVPHDLCHLE 165 (717)
Q Consensus 86 ~~~~~l~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~l~ 165 (717)
.+|... .+..... ...+......+|.++++|+.+.+.++. ..+...+|.++.+|+.+.+..| ++.+...+|.++.
T Consensus 134 ~aF~~~--~~~~~~~-~~~~~~i~~~aF~~c~~L~~i~l~~~~-~~I~~~~F~~c~~L~~i~l~~~-~~~I~~~~F~~~~ 208 (394)
T 4fs7_A 134 EAFKGC--DFKEITI-PEGVTVIGDEAFATCESLEYVSLPDSM-ETLHNGLFSGCGKLKSIKLPRN-LKIIRDYCFAECI 208 (394)
T ss_dssp TTTTTC--CCSEEEC-CTTCCEECTTTTTTCTTCCEEECCTTC-CEECTTTTTTCTTCCBCCCCTT-CCEECTTTTTTCT
T ss_pred eeeecc--ccccccc-CccccccchhhhcccCCCcEEecCCcc-ceeccccccCCCCceEEEcCCC-ceEeCchhhcccc
Confidence 555543 1222222 223333556778888888888887654 3366678888888888888776 5556667788887
Q ss_pred CCCEEeccCCcCc---------------------ccCCccccCCCCCCeEEecCccccCCCChhhhcccCCCeEEccCCc
Q 005040 166 RLNILNLSGNKLS---------------------GAIPQCLASLTSLRSLYLQSNKLSSSLPSSLWSLEYILRINLSSNS 224 (717)
Q Consensus 166 ~L~~L~L~~n~l~---------------------~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~ 224 (717)
.|+.+.+..+... .+....|.++..|+.+.+..+... .....|..+..++.+....+.
T Consensus 209 ~L~~i~~~~~~~~i~~~~~~~~~l~~i~ip~~~~~i~~~~f~~~~~l~~~~~~~~~~~-i~~~~F~~~~~l~~~~~~~~~ 287 (394)
T 4fs7_A 209 LLENMEFPNSLYYLGDFALSKTGVKNIIIPDSFTELGKSVFYGCTDLESISIQNNKLR-IGGSLFYNCSGLKKVIYGSVI 287 (394)
T ss_dssp TCCBCCCCTTCCEECTTTTTTCCCCEEEECTTCCEECSSTTTTCSSCCEEEECCTTCE-ECSCTTTTCTTCCEEEECSSE
T ss_pred ccceeecCCCceEeehhhcccCCCceEEECCCceecccccccccccceeEEcCCCcce-eeccccccccccceeccCcee
Confidence 7777777665432 111223334444444444444332 333444444555554444433
Q ss_pred CcccCCccccCCCCCCeEEccCCCCCCCCcccccCCcccccccccCccccCCCCccccccCccceEeccCCCCCCCCccc
Q 005040 225 LKGTLPSNIQKLNVLIDLDLSRNQLSSDIPSTIGTLKNLETLSLAGNQFQGPIPESVGNLISLESLDFSNNNLSGKIPKS 304 (717)
Q Consensus 225 l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~~~~~~~ 304 (717)
+ ....|..+.+|+.+.+.++ ++.+...+|.++.+|+.++|..+ ++.+...+|.++.+|+.++|..| ++.+...+
T Consensus 288 i---~~~~F~~~~~L~~i~l~~~-i~~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~a 361 (394)
T 4fs7_A 288 V---PEKTFYGCSSLTEVKLLDS-VKFIGEEAFESCTSLVSIDLPYL-VEEIGKRSFRGCTSLSNINFPLS-LRKIGANA 361 (394)
T ss_dssp E---CTTTTTTCTTCCEEEECTT-CCEECTTTTTTCTTCCEECCCTT-CCEECTTTTTTCTTCCEECCCTT-CCEECTTT
T ss_pred e---ccccccccccccccccccc-cceechhhhcCCCCCCEEEeCCc-ccEEhHHhccCCCCCCEEEECcc-ccEehHHH
Confidence 2 2235666667777776554 55455566777777777777544 55555667777777777777665 55555667
Q ss_pred ccccccccEEEccCC
Q 005040 305 LEALSHLKQFNVSHN 319 (717)
Q Consensus 305 ~~~l~~L~~L~l~~N 319 (717)
|.++++|+.+++..+
T Consensus 362 F~~C~~L~~i~lp~~ 376 (394)
T 4fs7_A 362 FQGCINLKKVELPKR 376 (394)
T ss_dssp BTTCTTCCEEEEEGG
T ss_pred hhCCCCCCEEEECCC
Confidence 777777777776543
No 385
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=99.67 E-value=3.5e-16 Score=146.83 Aligned_cols=114 Identities=25% Similarity=0.301 Sum_probs=71.7
Q ss_pred cCCCeEEccCCcCcccCCccccCCCCCCeEEccCCCCCCCCcccccCCcccccccccCccccCCCCccccccCccceEec
Q 005040 213 EYILRINLSSNSLKGTLPSNIQKLNVLIDLDLSRNQLSSDIPSTIGTLKNLETLSLAGNQFQGPIPESVGNLISLESLDF 292 (717)
Q Consensus 213 ~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~L 292 (717)
++|++|++++|++++..+..|..+++|++|++++|.+++..+..|..+++|++|++++|++++..+..+..+++|++|+|
T Consensus 28 ~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l 107 (177)
T 2o6r_A 28 SSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHENKLQSLPNGVFDKLTQLKELAL 107 (177)
T ss_dssp TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred CCCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcceEeChhHccCCCccCEEECCCCCccccCHHHhhCCcccCEEEC
Confidence 34555555555555444445555566666666666666544455566666666666666666555555666677777777
Q ss_pred cCCCCCCCCcccccccccccEEEccCCccccccc
Q 005040 293 SNNNLSGKIPKSLEALSHLKQFNVSHNRLEGEIP 326 (717)
Q Consensus 293 ~~N~~~~~~~~~~~~l~~L~~L~l~~N~l~~~~p 326 (717)
++|++++..+..+..+++|+.|+|++|++++.+|
T Consensus 108 ~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~ 141 (177)
T 2o6r_A 108 DTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP 141 (177)
T ss_dssp CSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCHH
T ss_pred cCCcceEeCHHHhcCCcccCEEEecCCCeeccCc
Confidence 7777765555556667777777777777777665
No 386
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.66 E-value=9.9e-17 Score=145.94 Aligned_cols=83 Identities=24% Similarity=0.307 Sum_probs=31.8
Q ss_pred CCcEEEccCCCCc-ccCCccccccCCCCEEeccCCcccccCCccccCCCCCCEEeccCCcCcccCCccccCCCCCCeEEe
Q 005040 118 GLIVLSLGFNDLN-GTIPTSIGTLQQLQGFYVPENNLQGYVPHDLCHLERLNILNLSGNKLSGAIPQCLASLTSLRSLYL 196 (717)
Q Consensus 118 ~L~~L~L~~n~l~-~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 196 (717)
+|+.|++++|.++ +.+|..+..+++|+.|++++|.+++. ..+..+++|++|+|++|.+++.+|..+..+++|++|++
T Consensus 18 ~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l 95 (149)
T 2je0_A 18 DVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSI--ANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTHLNL 95 (149)
T ss_dssp GCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCCCCC--TTCCCCTTCCEEECCSSCCCSCTHHHHHHCTTCCEEEC
T ss_pred cCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCCCCCc--hhhhcCCCCCEEECCCCcccchHHHHhhhCCCCCEEEC
Confidence 3344444444433 23333333333344444444333332 23333344444444444443333333333334444444
Q ss_pred cCcccc
Q 005040 197 QSNKLS 202 (717)
Q Consensus 197 ~~N~l~ 202 (717)
++|+++
T Consensus 96 s~N~i~ 101 (149)
T 2je0_A 96 SGNKIK 101 (149)
T ss_dssp TTSCCC
T ss_pred CCCcCC
Confidence 444433
No 387
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.66 E-value=1.7e-16 Score=144.29 Aligned_cols=128 Identities=19% Similarity=0.187 Sum_probs=96.5
Q ss_pred cccceeeecCCcce-ecCCccccCCCCCcEEEccCCCCcccCCccccccCCCCEEeccCCcccccCCccccCCCCCCEEe
Q 005040 93 ASLQNIYAFECKLG-GSIPKEIGNLRGLIVLSLGFNDLNGTIPTSIGTLQQLQGFYVPENNLQGYVPHDLCHLERLNILN 171 (717)
Q Consensus 93 ~~L~~L~l~~n~l~-~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~ 171 (717)
++|+.|++++|++. +.+|..+..+++|++|+|++|.+++. ..+..+++|++|++++|.+++..|..+..+++|++|+
T Consensus 17 ~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~ 94 (149)
T 2je0_A 17 SDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSI--ANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTHLN 94 (149)
T ss_dssp GGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCCCCC--TTCCCCTTCCEEECCSSCCCSCTHHHHHHCTTCCEEE
T ss_pred ccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCCCCCc--hhhhcCCCCCEEECCCCcccchHHHHhhhCCCCCEEE
Confidence 34556666666655 45666777788888888888888855 6788888888888888888876777777788888888
Q ss_pred ccCCcCccc-CCccccCCCCCCeEEecCccccCCCC---hhhhcccCCCeEEccC
Q 005040 172 LSGNKLSGA-IPQCLASLTSLRSLYLQSNKLSSSLP---SSLWSLEYILRINLSS 222 (717)
Q Consensus 172 L~~n~l~~~-~~~~~~~l~~L~~L~L~~N~l~~~~~---~~~~~l~~L~~L~l~~ 222 (717)
+++|.+++. .+..+..+++|++|++++|.+++..+ ..+..+++|+.|++++
T Consensus 95 ls~N~i~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~d 149 (149)
T 2je0_A 95 LSGNKIKDLSTIEPLKKLENLKSLDLFNCEVTNLNDYRENVFKLLPQLTYLDGYD 149 (149)
T ss_dssp CTTSCCCSHHHHGGGGGCTTCCEEECTTCGGGGSTTHHHHHHHHCTTCCEETTBC
T ss_pred CCCCcCCChHHHHHHhhCCCCCEEeCcCCcccchHHHHHHHHHHCCCcccccCCC
Confidence 888888863 23667888888888888888886555 4677778888877753
No 388
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.66 E-value=5.8e-16 Score=147.22 Aligned_cols=128 Identities=27% Similarity=0.380 Sum_probs=91.2
Q ss_pred CEEeccCCcCcccCCccccCCCCCCeEEecCccccCCCChhhhcccCCCeEEccCCcCcccCCccccCCCCCCeEEccCC
Q 005040 168 NILNLSGNKLSGAIPQCLASLTSLRSLYLQSNKLSSSLPSSLWSLEYILRINLSSNSLKGTLPSNIQKLNVLIDLDLSRN 247 (717)
Q Consensus 168 ~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N 247 (717)
+.+++++|+++ .+|..+. ++|++|+|++|+|+ .+|..|.++++|+.|+|++|.|++..+..|.++++|+.|+|++|
T Consensus 13 ~~l~~~~~~l~-~ip~~~~--~~l~~L~L~~n~i~-~ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N 88 (193)
T 2wfh_A 13 TVVRCSNKGLK-VLPKGIP--RDVTELYLDGNQFT-LVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYN 88 (193)
T ss_dssp TEEECTTSCCS-SCCSCCC--TTCCEEECCSSCCC-SCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred CEEEcCCCCCC-cCCCCCC--CCCCEEECCCCcCc-hhHHHhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCCC
Confidence 45667777666 3443332 46777777777776 45566777777777777777777666667777777777777777
Q ss_pred CCCCCCcccccCCcccccccccCccccCCCCccccccCccceEeccCCCCCC
Q 005040 248 QLSSDIPSTIGTLKNLETLSLAGNQFQGPIPESVGNLISLESLDFSNNNLSG 299 (717)
Q Consensus 248 ~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~~ 299 (717)
.|++..+..|..+++|++|+|++|+|+...+..|..+++|+.|+|++|++..
T Consensus 89 ~l~~i~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~C 140 (193)
T 2wfh_A 89 RLRCIPPRTFDGLKSLRLLSLHGNDISVVPEGAFNDLSALSHLAIGANPLYC 140 (193)
T ss_dssp CCCBCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECCSSCEEC
T ss_pred ccCEeCHHHhCCCCCCCEEECCCCCCCeeChhhhhcCccccEEEeCCCCeec
Confidence 7777666677777777777777777776656667777888888888887763
No 389
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=99.64 E-value=1.5e-15 Score=142.46 Aligned_cols=129 Identities=25% Similarity=0.277 Sum_probs=73.5
Q ss_pred cEEEccCCCCcccCCccccccCCCCEEeccCCcccccCCccccCCCCCCEEeccCCcCcccCCccccCCCCCCeEEecCc
Q 005040 120 IVLSLGFNDLNGTIPTSIGTLQQLQGFYVPENNLQGYVPHDLCHLERLNILNLSGNKLSGAIPQCLASLTSLRSLYLQSN 199 (717)
Q Consensus 120 ~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N 199 (717)
+.+++++|.++. +|..+ .++|++|++++|++++..+..|..+++|++|+|++|++++..+..|..+++|++|+|++|
T Consensus 10 ~~l~~~~~~l~~-~p~~~--~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N 86 (177)
T 2o6r_A 10 TEIRCNSKGLTS-VPTGI--PSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHEN 86 (177)
T ss_dssp TEEECCSSCCSS-CCTTC--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred CEEEecCCCCcc-CCCCC--CCCCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcceEeChhHccCCCccCEEECCCC
Confidence 456666666653 23222 245666666666666555555566666666666666666544445556666666666666
Q ss_pred cccCCCChhhhcccCCCeEEccCCcCcccCCccccCCCCCCeEEccCCCCCC
Q 005040 200 KLSSSLPSSLWSLEYILRINLSSNSLKGTLPSNIQKLNVLIDLDLSRNQLSS 251 (717)
Q Consensus 200 ~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~ 251 (717)
++++..+..|..+++|++|++++|.+++..+..+..+++|+.|++++|.+.+
T Consensus 87 ~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~ 138 (177)
T 2o6r_A 87 KLQSLPNGVFDKLTQLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDC 138 (177)
T ss_dssp CCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCC
T ss_pred CccccCHHHhhCCcccCEEECcCCcceEeCHHHhcCCcccCEEEecCCCeec
Confidence 6665544455556666666666666654444445555666666666665554
No 390
>4gyi_A RIO2 kinase; protein kinase, ADP complex, phosphoaspartate, acyl-phosphat ribosome biogenesis, Ser/Thr protein kinase; HET: PHD ADP; 2.20A {Chaetomium thermophilum} PDB: 4gyg_A
Probab=99.62 E-value=1.4e-16 Score=164.75 Aligned_cols=136 Identities=13% Similarity=0.153 Sum_probs=99.0
Q ss_pred cCCccccccccccEEEEEEEecCCCeEEEEEechhh------------------HH----HHHHHHHHHHHHHhcCCCce
Q 005040 428 EFNECNLLGTGGFGSVYKGTLSDGTNVAIKIFNLQL------------------ER----AFRSFDSECEILRNVRHRNL 485 (717)
Q Consensus 428 ~~~~~~~lg~G~~g~V~~~~~~~~~~vavK~~~~~~------------------~~----~~~~~~~e~~~l~~l~hpni 485 (717)
-|++...||+|+||.||+|...+|+.||||+++... .. ..-...+|...|.++.+.++
T Consensus 96 iY~I~~~IG~Gk~a~VY~a~d~~G~~vAvKi~r~~~~sfr~v~~~r~~~~~~~~~~~~~~~rl~A~kE~~nL~rL~~~gv 175 (397)
T 4gyi_A 96 VYSVGSRIGVGKESDIMIVADEKGKQKVLKIHRLGRISFRTVKANRDYLRNRSTGSWMYLSRLAAIKEFAFMKALYEEGF 175 (397)
T ss_dssp CSEEEEEEEECSSEEEEEEECTTCCEEEEEEECTTEECCCCCC--CEECTTSCHHHHHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred EEEecCEeeeCCceEEEEEECCCCCEEEEEEEecccccHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 388999999999999999999899999999875321 00 00112346666666654443
Q ss_pred e--eEeeeeecCCeeEEEEEccCCCCHHHHHhhCCCCCCHHHHHHHHHHHHHHHHHHhhcCCCCCeEecCCCCCCeeeCC
Q 005040 486 L--KILGSCSNLDFKALVLEFMPNGSLEKWLYSHNYFLDILQRLNIMIDVGSALEYLHHCHSSAPIIHCDLKPTNILLDE 563 (717)
Q Consensus 486 v--~~~~~~~~~~~~~lv~e~~~~g~L~~~l~~~~~~~~~~~~~~i~~~i~~~l~~LH~~~~~~~ivH~dlk~~Nill~~ 563 (717)
. ..+++ ...++||||++|++|.++... .....++.|++.+|.||| ..+||||||||.|||+++
T Consensus 176 ~vp~p~~~----~~~~LVME~i~G~~L~~l~~~-------~~~~~l~~qll~~l~~lH----~~gIVHrDLKp~NILl~~ 240 (397)
T 4gyi_A 176 PVPEPIAQ----SRHTIVMSLVDALPMRQVSSV-------PDPASLYADLIALILRLA----KHGLIHGDFNEFNILIRE 240 (397)
T ss_dssp SCCCEEEE----ETTEEEEECCSCEEGGGCCCC-------SCHHHHHHHHHHHHHHHH----HTTEECSCCSTTSEEEEE
T ss_pred CCCeeeec----cCceEEEEecCCccHhhhccc-------HHHHHHHHHHHHHHHHHH----HCCCcCCCCCHHHEEEeC
Confidence 2 22222 123799999999888654321 123567899999999999 578999999999999987
Q ss_pred CC----------cEEEeeecccccc
Q 005040 564 NM----------VAHVSDFGISKLL 578 (717)
Q Consensus 564 ~~----------~~kl~Dfgl~~~~ 578 (717)
++ .+.|+||+-+...
T Consensus 241 dgd~~d~~~~~~~~~iID~~Q~V~~ 265 (397)
T 4gyi_A 241 EKDAEDPSSITLTPIIIXFPQMVSM 265 (397)
T ss_dssp EECSSCTTSEEEEEEECCCTTCEET
T ss_pred CCCcccccccccceEEEEeCCcccC
Confidence 76 3899999977654
No 391
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.60 E-value=1.5e-15 Score=142.34 Aligned_cols=131 Identities=21% Similarity=0.201 Sum_probs=68.5
Q ss_pred ccCCCCCcEEEccCCCCcccCCccccccC-CCCEEeccCCcccccCCccccCCCCCCEEeccCCcCcccCCccccCCCCC
Q 005040 113 IGNLRGLIVLSLGFNDLNGTIPTSIGTLQ-QLQGFYVPENNLQGYVPHDLCHLERLNILNLSGNKLSGAIPQCLASLTSL 191 (717)
Q Consensus 113 ~~~l~~L~~L~L~~n~l~~~~~~~~~~l~-~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L 191 (717)
+.++++|++|+|++|+++.. +. +..+. +|++|++++|.|++. ..|..+++|++|+|++|+|++..+..|..+++|
T Consensus 15 ~~~~~~L~~L~l~~n~l~~i-~~-~~~~~~~L~~L~Ls~N~l~~~--~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L 90 (176)
T 1a9n_A 15 YTNAVRDRELDLRGYKIPVI-EN-LGATLDQFDAIDFSDNEIRKL--DGFPLLRRLKTLLVNNNRICRIGEGLDQALPDL 90 (176)
T ss_dssp EECTTSCEEEECTTSCCCSC-CC-GGGGTTCCSEEECCSSCCCEE--CCCCCCSSCCEEECCSSCCCEECSCHHHHCTTC
T ss_pred cCCcCCceEEEeeCCCCchh-HH-hhhcCCCCCEEECCCCCCCcc--cccccCCCCCEEECCCCcccccCcchhhcCCCC
Confidence 45556666666666666632 32 33333 666666666666644 345556666666666666654433444555556
Q ss_pred CeEEecCccccCCCCh--hhhcccCCCeEEccCCcCcccCCcc----ccCCCCCCeEEccCCCC
Q 005040 192 RSLYLQSNKLSSSLPS--SLWSLEYILRINLSSNSLKGTLPSN----IQKLNVLIDLDLSRNQL 249 (717)
Q Consensus 192 ~~L~L~~N~l~~~~~~--~~~~l~~L~~L~l~~N~l~~~~~~~----~~~l~~L~~L~l~~N~l 249 (717)
++|+|++|+++ .+|. .+..+++|+.|++++|.++ ..|.. +..+++|+.|++++|.+
T Consensus 91 ~~L~L~~N~i~-~~~~~~~l~~l~~L~~L~l~~N~i~-~~~~~~~~~~~~l~~L~~Ld~~~n~~ 152 (176)
T 1a9n_A 91 TELILTNNSLV-ELGDLDPLASLKSLTYLCILRNPVT-NKKHYRLYVIYKVPQVRVLDFQKVKL 152 (176)
T ss_dssp CEEECCSCCCC-CGGGGGGGGGCTTCCEEECCSSGGG-GSTTHHHHHHHHCTTCSEETTEECCH
T ss_pred CEEECCCCcCC-cchhhHhhhcCCCCCEEEecCCCCC-CcHhHHHHHHHHCCccceeCCCcCCH
Confidence 66666555554 2332 4445555555555555554 22322 44444444444444443
No 392
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.60 E-value=1.3e-15 Score=142.63 Aligned_cols=109 Identities=17% Similarity=0.191 Sum_probs=53.1
Q ss_pred ccccCCCCEEeccCCcccccCCccccCCC-CCCEEeccCCcCcccCCccccCCCCCCeEEecCccccCCCChhhhcccCC
Q 005040 137 IGTLQQLQGFYVPENNLQGYVPHDLCHLE-RLNILNLSGNKLSGAIPQCLASLTSLRSLYLQSNKLSSSLPSSLWSLEYI 215 (717)
Q Consensus 137 ~~~l~~L~~L~l~~n~i~~~~~~~~~~l~-~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L 215 (717)
+.++++|+.|++++|+++.. +. +..+. +|++|+|++|.|++. ..|..+++|+.|+|++|++++..+..+..+++|
T Consensus 15 ~~~~~~L~~L~l~~n~l~~i-~~-~~~~~~~L~~L~Ls~N~l~~~--~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L 90 (176)
T 1a9n_A 15 YTNAVRDRELDLRGYKIPVI-EN-LGATLDQFDAIDFSDNEIRKL--DGFPLLRRLKTLLVNNNRICRIGEGLDQALPDL 90 (176)
T ss_dssp EECTTSCEEEECTTSCCCSC-CC-GGGGTTCCSEEECCSSCCCEE--CCCCCCSSCCEEECCSSCCCEECSCHHHHCTTC
T ss_pred cCCcCCceEEEeeCCCCchh-HH-hhhcCCCCCEEECCCCCCCcc--cccccCCCCCEEECCCCcccccCcchhhcCCCC
Confidence 44555556666666655533 22 33222 555555555555543 345555555555555555554333333455555
Q ss_pred CeEEccCCcCcccCCc--cccCCCCCCeEEccCCCCC
Q 005040 216 LRINLSSNSLKGTLPS--NIQKLNVLIDLDLSRNQLS 250 (717)
Q Consensus 216 ~~L~l~~N~l~~~~~~--~~~~l~~L~~L~l~~N~l~ 250 (717)
++|++++|.|+ .+|. .+..+++|+.|++++|.++
T Consensus 91 ~~L~L~~N~i~-~~~~~~~l~~l~~L~~L~l~~N~i~ 126 (176)
T 1a9n_A 91 TELILTNNSLV-ELGDLDPLASLKSLTYLCILRNPVT 126 (176)
T ss_dssp CEEECCSCCCC-CGGGGGGGGGCTTCCEEECCSSGGG
T ss_pred CEEECCCCcCC-cchhhHhhhcCCCCCEEEecCCCCC
Confidence 55555555554 2222 3444444444444444444
No 393
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=99.59 E-value=3.8e-14 Score=151.08 Aligned_cols=296 Identities=12% Similarity=0.087 Sum_probs=223.0
Q ss_pred CCCC-ccccCCCCCcEEECCCCcceecCCcCCCCCCCCCEEEcccccccCccCCcccc--------------cccccccC
Q 005040 2 GTIP-NSITNATKLIGLDLGLNSFSGHIPNTFGNLRHLSVLSLMMNNLTTESSSADQW--------------SFLSSLTN 66 (717)
Q Consensus 2 ~~iP-~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~--------------~~~~~l~~ 66 (717)
.+|+ ..|.++++|+.++|.++ ++.+...+|.+..+|+.+.+..+ ++.+...++.. ..-..|.+
T Consensus 83 ~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~c~~L~~i~~p~~-l~~i~~~aF~~~~~~~~~~~~~~~~i~~~aF~~ 160 (394)
T 4fs7_A 83 REIGEFAFENCSKLEIINIPDS-VKMIGRCTFSGCYALKSILLPLM-LKSIGVEAFKGCDFKEITIPEGVTVIGDEAFAT 160 (394)
T ss_dssp CEECTTTTTTCTTCCEECCCTT-CCEECTTTTTTCTTCCCCCCCTT-CCEECTTTTTTCCCSEEECCTTCCEECTTTTTT
T ss_pred cCcchhHhhCCCCCcEEEeCCC-ceEccchhhcccccchhhcccCc-eeeecceeeecccccccccCccccccchhhhcc
Confidence 3454 46888999999999866 77788999999999999887644 44444333110 01134677
Q ss_pred ccCCcEEeccCCCCcccCCcchhccccccceeeecCCcceecCCccccCCCCCcEEEccCCCCcccCCccccccCCCCEE
Q 005040 67 CRNLANLALASNPLGGILPPLIGNFSASLQNIYAFECKLGGSIPKEIGNLRGLIVLSLGFNDLNGTIPTSIGTLQQLQGF 146 (717)
Q Consensus 67 l~~L~~L~L~~N~l~~~~~~~~~~l~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L 146 (717)
+++|+.+.+.++. ..+....|... .+|+.+.+..+ +..+....|.++..|+.+.+..+... +.+.+....+|+.+
T Consensus 161 c~~L~~i~l~~~~-~~I~~~~F~~c-~~L~~i~l~~~-~~~I~~~~F~~~~~L~~i~~~~~~~~--i~~~~~~~~~l~~i 235 (394)
T 4fs7_A 161 CESLEYVSLPDSM-ETLHNGLFSGC-GKLKSIKLPRN-LKIIRDYCFAECILLENMEFPNSLYY--LGDFALSKTGVKNI 235 (394)
T ss_dssp CTTCCEEECCTTC-CEECTTTTTTC-TTCCBCCCCTT-CCEECTTTTTTCTTCCBCCCCTTCCE--ECTTTTTTCCCCEE
T ss_pred cCCCcEEecCCcc-ceeccccccCC-CCceEEEcCCC-ceEeCchhhccccccceeecCCCceE--eehhhcccCCCceE
Confidence 7888888887654 33555555554 56888877765 55566677888888888877766543 23344455778888
Q ss_pred eccCCcccccCCccccCCCCCCEEeccCCcCcccCCccccCCCCCCeEEecCccccCCCChhhhcccCCCeEEccCCcCc
Q 005040 147 YVPENNLQGYVPHDLCHLERLNILNLSGNKLSGAIPQCLASLTSLRSLYLQSNKLSSSLPSSLWSLEYILRINLSSNSLK 226 (717)
Q Consensus 147 ~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~ 226 (717)
.+..+ ++.+....|.++..|+.+.+..+... +....|..+..++.+....+.+. ...|..+.+|+.+.+..+ ++
T Consensus 236 ~ip~~-~~~i~~~~f~~~~~l~~~~~~~~~~~-i~~~~F~~~~~l~~~~~~~~~i~---~~~F~~~~~L~~i~l~~~-i~ 309 (394)
T 4fs7_A 236 IIPDS-FTELGKSVFYGCTDLESISIQNNKLR-IGGSLFYNCSGLKKVIYGSVIVP---EKTFYGCSSLTEVKLLDS-VK 309 (394)
T ss_dssp EECTT-CCEECSSTTTTCSSCCEEEECCTTCE-ECSCTTTTCTTCCEEEECSSEEC---TTTTTTCTTCCEEEECTT-CC
T ss_pred EECCC-ceecccccccccccceeEEcCCCcce-eeccccccccccceeccCceeec---cccccccccccccccccc-cc
Confidence 88654 44466778899999999999988665 67778999999999999887654 356889999999999866 77
Q ss_pred ccCCccccCCCCCCeEEccCCCCCCCCcccccCCcccccccccCccccCCCCccccccCccceEeccCCCCCCCCccccc
Q 005040 227 GTLPSNIQKLNVLIDLDLSRNQLSSDIPSTIGTLKNLETLSLAGNQFQGPIPESVGNLISLESLDFSNNNLSGKIPKSLE 306 (717)
Q Consensus 227 ~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~~~~~~~~~ 306 (717)
.+...+|.++.+|+.++|.++ ++.+...+|.++.+|+.+++..| ++.+...+|.++.+|+.++|..+ +. .+...|.
T Consensus 310 ~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~C~~L~~i~lp~~-~~-~~~~~F~ 385 (394)
T 4fs7_A 310 FIGEEAFESCTSLVSIDLPYL-VEEIGKRSFRGCTSLSNINFPLS-LRKIGANAFQGCINLKKVELPKR-LE-QYRYDFE 385 (394)
T ss_dssp EECTTTTTTCTTCCEECCCTT-CCEECTTTTTTCTTCCEECCCTT-CCEECTTTBTTCTTCCEEEEEGG-GG-GGGGGBC
T ss_pred eechhhhcCCCCCCEEEeCCc-ccEEhHHhccCCCCCCEEEECcc-ccEehHHHhhCCCCCCEEEECCC-CE-Ehhheec
Confidence 677889999999999999755 77777889999999999999887 77678889999999999999866 33 3456788
Q ss_pred ccccccEE
Q 005040 307 ALSHLKQF 314 (717)
Q Consensus 307 ~l~~L~~L 314 (717)
++++|+.+
T Consensus 386 ~c~~L~~I 393 (394)
T 4fs7_A 386 DTTKFKWI 393 (394)
T ss_dssp TTCEEEEE
T ss_pred CCCCCcEE
Confidence 88888865
No 394
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=99.59 E-value=1.2e-17 Score=160.08 Aligned_cols=133 Identities=24% Similarity=0.315 Sum_probs=71.9
Q ss_pred cccCCCCCCeEEecCccccCCCChhhhcccCCCeEEccCCcCcccCCccccCCCCCCeEEccCCCCCCCCcccccCCccc
Q 005040 184 CLASLTSLRSLYLQSNKLSSSLPSSLWSLEYILRINLSSNSLKGTLPSNIQKLNVLIDLDLSRNQLSSDIPSTIGTLKNL 263 (717)
Q Consensus 184 ~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L 263 (717)
.+..+++|++|+|++|.+++ +| .+..+++|++|++++|.|+ .+|..+..+++|+.|++++|.+++ +| .+..+++|
T Consensus 43 ~~~~l~~L~~L~ls~n~l~~-l~-~~~~l~~L~~L~l~~n~l~-~l~~~~~~~~~L~~L~L~~N~l~~-l~-~~~~l~~L 117 (198)
T 1ds9_A 43 TLSTLKACKHLALSTNNIEK-IS-SLSGMENLRILSLGRNLIK-KIENLDAVADTLEELWISYNQIAS-LS-GIEKLVNL 117 (198)
T ss_dssp HHHHTTTCSEEECSEEEESC-CC-CHHHHTTCCEEEEEEEEEC-SCSSHHHHHHHCSEEEEEEEECCC-HH-HHHHHHHS
T ss_pred HHhcCCCCCEEECCCCCCcc-cc-ccccCCCCCEEECCCCCcc-cccchhhcCCcCCEEECcCCcCCc-CC-ccccCCCC
Confidence 44555555555555555553 33 4555555555555555555 344444445555555555555554 22 35555666
Q ss_pred ccccccCccccCCCC-ccccccCccceEeccCCCCCCCCcc----------cccccccccEEEccCCcccc
Q 005040 264 ETLSLAGNQFQGPIP-ESVGNLISLESLDFSNNNLSGKIPK----------SLEALSHLKQFNVSHNRLEG 323 (717)
Q Consensus 264 ~~L~l~~N~l~~~~~-~~~~~l~~L~~L~L~~N~~~~~~~~----------~~~~l~~L~~L~l~~N~l~~ 323 (717)
++|++++|++++..+ ..+..+++|++|++++|++.+..|. .+..+++|+.|| +|+++.
T Consensus 118 ~~L~l~~N~i~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~~l~~L~~Ld--~~~i~~ 186 (198)
T 1ds9_A 118 RVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLYNDYKENNATSEYRIEVVKRLPNLKKLD--GMPVDV 186 (198)
T ss_dssp SEEEESEEECCCHHHHHHHTTTTTCSEEEECSCHHHHHHHTTTTHHHHHHHHHHHCSSCSEEC--CGGGTT
T ss_pred CEEECCCCcCCchhHHHHHhcCCCCCEEEecCCccccccccccchHHHHHHHHHhCCCcEEEC--CcccCH
Confidence 666666666653222 3455666666666666666544433 266677777665 566553
No 395
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=99.57 E-value=3.4e-17 Score=156.82 Aligned_cols=132 Identities=28% Similarity=0.322 Sum_probs=70.2
Q ss_pred cccCCCCCCEEeccCCcCcccCCccccCCCCCCeEEecCccccCCCChhhhcccCCCeEEccCCcCcccCCccccCCCCC
Q 005040 160 DLCHLERLNILNLSGNKLSGAIPQCLASLTSLRSLYLQSNKLSSSLPSSLWSLEYILRINLSSNSLKGTLPSNIQKLNVL 239 (717)
Q Consensus 160 ~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L 239 (717)
.+..+++|++|+|++|.+++ +| .+..+++|+.|+|++|.++ .+|..+..+++|++|++++|++++ +| .+..+++|
T Consensus 43 ~~~~l~~L~~L~ls~n~l~~-l~-~~~~l~~L~~L~l~~n~l~-~l~~~~~~~~~L~~L~L~~N~l~~-l~-~~~~l~~L 117 (198)
T 1ds9_A 43 TLSTLKACKHLALSTNNIEK-IS-SLSGMENLRILSLGRNLIK-KIENLDAVADTLEELWISYNQIAS-LS-GIEKLVNL 117 (198)
T ss_dssp HHHHTTTCSEEECSEEEESC-CC-CHHHHTTCCEEEEEEEEEC-SCSSHHHHHHHCSEEEEEEEECCC-HH-HHHHHHHS
T ss_pred HHhcCCCCCEEECCCCCCcc-cc-ccccCCCCCEEECCCCCcc-cccchhhcCCcCCEEECcCCcCCc-CC-ccccCCCC
Confidence 44455555555555555553 33 4555555555555555555 344444455555555555555553 22 45555555
Q ss_pred CeEEccCCCCCCCCc-ccccCCcccccccccCccccCCCCc----------cccccCccceEeccCCCCC
Q 005040 240 IDLDLSRNQLSSDIP-STIGTLKNLETLSLAGNQFQGPIPE----------SVGNLISLESLDFSNNNLS 298 (717)
Q Consensus 240 ~~L~l~~N~l~~~~~-~~~~~l~~L~~L~l~~N~l~~~~~~----------~~~~l~~L~~L~L~~N~~~ 298 (717)
+.|++++|.+++..+ ..+..+++|++|++++|++.+..|. .+..+++|+.|+ +|.++
T Consensus 118 ~~L~l~~N~i~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~~l~~L~~Ld--~~~i~ 185 (198)
T 1ds9_A 118 RVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLYNDYKENNATSEYRIEVVKRLPNLKKLD--GMPVD 185 (198)
T ss_dssp SEEEESEEECCCHHHHHHHTTTTTCSEEEECSCHHHHHHHTTTTHHHHHHHHHHHCSSCSEEC--CGGGT
T ss_pred CEEECCCCcCCchhHHHHHhcCCCCCEEEecCCccccccccccchHHHHHHHHHhCCCcEEEC--CcccC
Confidence 566666665554221 2455566666666666666544333 255666677665 55554
No 396
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=99.57 E-value=9.1e-14 Score=148.15 Aligned_cols=296 Identities=10% Similarity=0.119 Sum_probs=207.8
Q ss_pred cccCC-CCCcEEECCCCcceecCCcCCCCCCCCCEEEccccc---ccCccCCcccccccccccCccCCcEEeccCCCCcc
Q 005040 7 SITNA-TKLIGLDLGLNSFSGHIPNTFGNLRHLSVLSLMMNN---LTTESSSADQWSFLSSLTNCRNLANLALASNPLGG 82 (717)
Q Consensus 7 ~~~~l-~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~---l~~~~~~~~~~~~~~~l~~l~~L~~L~L~~N~l~~ 82 (717)
.|.+. ..|+++.+..+ ++.+...+|.+..+|+.+.+..|. ++.+...+ |.++.+|+.+.+..+ ++.
T Consensus 58 aF~~~~~~L~sI~iP~s-vt~Ig~~AF~~C~~L~~i~~~~n~p~~l~~Ig~~a--------F~~c~~L~~i~~~~~-~~~ 127 (394)
T 4gt6_A 58 VFCNYKYVLTSVQIPDT-VTEIGSNAFYNCTSLKRVTIQDNKPSCVKKIGRQA--------FMFCSELTDIPILDS-VTE 127 (394)
T ss_dssp TTTTCCSCCCEEEECTT-CCEECTTTTTTCTTCCEEEEGGGCCCCCCEECTTT--------TTTCTTCCBCGGGTT-CSE
T ss_pred hccCCCCcCEEEEECCC-eeEEhHHHhhCCccCceEeecCCCCCeeeEechhh--------chhcccceeeccCCc-cce
Confidence 35555 35888888765 777888888888889988888774 66666554 778888888877655 444
Q ss_pred cCCcchhccccccceeeecCCcceecCCccccCCCCCcEEEccCCCCcccCCccccccCCCCEEeccCCcccccCCcccc
Q 005040 83 ILPPLIGNFSASLQNIYAFECKLGGSIPKEIGNLRGLIVLSLGFNDLNGTIPTSIGTLQQLQGFYVPENNLQGYVPHDLC 162 (717)
Q Consensus 83 ~~~~~~~~l~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~ 162 (717)
+....|... .+|+.+.+..+ +..+....|.++.+|+.+.+..+ ++.+...+|.+ .+|+.+.+..+-.. ....+|.
T Consensus 128 I~~~aF~~c-~~L~~i~lp~~-~~~I~~~~F~~c~~L~~i~~~~~-~~~I~~~aF~~-~~l~~i~ip~~~~~-i~~~af~ 202 (394)
T 4gt6_A 128 IDSEAFHHC-EELDTVTIPEG-VTSVADGMFSYCYSLHTVTLPDS-VTAIEERAFTG-TALTQIHIPAKVTR-IGTNAFS 202 (394)
T ss_dssp ECTTTTTTC-TTCCEEECCTT-CCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTT-CCCSEEEECTTCCE-ECTTTTT
T ss_pred ehhhhhhhh-cccccccccce-eeeecccceecccccccccccce-eeEeccccccc-cceeEEEECCcccc-cccchhh
Confidence 555555554 56888888644 44466777888888888888765 44455556654 56888888765433 6667788
Q ss_pred CCCCCCEEeccCCcCcccCCcccc-------------CCCCCCeEEecCccccCCCChhhhcccCCCeEEccCCcCcccC
Q 005040 163 HLERLNILNLSGNKLSGAIPQCLA-------------SLTSLRSLYLQSNKLSSSLPSSLWSLEYILRINLSSNSLKGTL 229 (717)
Q Consensus 163 ~l~~L~~L~L~~n~l~~~~~~~~~-------------~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~ 229 (717)
++.+|+......+.........+. ....+..+.+.. .++.....+|.++.+|+.+.+.++... +.
T Consensus 203 ~c~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ip~-~v~~i~~~aF~~c~~L~~i~lp~~~~~-I~ 280 (394)
T 4gt6_A 203 ECFALSTITSDSESYPAIDNVLYEKSANGDYALIRYPSQREDPAFKIPN-GVARIETHAFDSCAYLASVKMPDSVVS-IG 280 (394)
T ss_dssp TCTTCCEEEECCSSSCBSSSCEEEECTTSCEEEEECCTTCCCSEEECCT-TEEEECTTTTTTCSSCCEEECCTTCCE-EC
T ss_pred hccccceecccccccccccceeecccccccccccccccccccceEEcCC-cceEcccceeeecccccEEecccccce-ec
Confidence 888888877766554422111111 122333444332 233345567888889999998876554 67
Q ss_pred CccccCCCCCCeEEccCCCCCCCCcccccCCcccccccccCccccCCCCccccccCccceEeccCCCCCCCCcccccccc
Q 005040 230 PSNIQKLNVLIDLDLSRNQLSSDIPSTIGTLKNLETLSLAGNQFQGPIPESVGNLISLESLDFSNNNLSGKIPKSLEALS 309 (717)
Q Consensus 230 ~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~~~~~~~~~~l~ 309 (717)
..+|.++++|+.+.+. +.++.+....|.++.+|+.++|..+ ++.+...+|.++.+|+.+.|..+ ++.+...+|.+++
T Consensus 281 ~~aF~~c~~L~~i~l~-~~i~~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~C~~L~~i~ip~s-v~~I~~~aF~~C~ 357 (394)
T 4gt6_A 281 TGAFMNCPALQDIEFS-SRITELPESVFAGCISLKSIDIPEG-ITQILDDAFAGCEQLERIAIPSS-VTKIPESAFSNCT 357 (394)
T ss_dssp TTTTTTCTTCCEEECC-TTCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEEECTT-CCBCCGGGGTTCT
T ss_pred CcccccccccccccCC-CcccccCceeecCCCCcCEEEeCCc-ccEehHhHhhCCCCCCEEEECcc-cCEEhHhHhhCCC
Confidence 7788889999999986 4566666778888999999999765 66567788889999999999655 6656778899999
Q ss_pred cccEEEccCCccc
Q 005040 310 HLKQFNVSHNRLE 322 (717)
Q Consensus 310 ~L~~L~l~~N~l~ 322 (717)
+|+.+++.+|...
T Consensus 358 ~L~~i~~~~~~~~ 370 (394)
T 4gt6_A 358 ALNNIEYSGSRSQ 370 (394)
T ss_dssp TCCEEEESSCHHH
T ss_pred CCCEEEECCceee
Confidence 9999999887543
No 397
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=99.53 E-value=3.1e-14 Score=132.26 Aligned_cols=109 Identities=22% Similarity=0.264 Sum_probs=79.0
Q ss_pred CCeEEccCCcCcccCCccccCCCCCCeEEccCCCCCCCCcccccCCcccccccccCccccCCCCccccccCccceEeccC
Q 005040 215 ILRINLSSNSLKGTLPSNIQKLNVLIDLDLSRNQLSSDIPSTIGTLKNLETLSLAGNQFQGPIPESVGNLISLESLDFSN 294 (717)
Q Consensus 215 L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~L~~ 294 (717)
.+.|++++|.++ .+|..+. ++|+.|+|++|.|++..|..|..+++|++|+|++|+|++..+..|.++++|++|+|++
T Consensus 11 ~~~l~~s~n~l~-~ip~~~~--~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~ 87 (170)
T 3g39_A 11 GTTVDCSGKSLA-SVPTGIP--TTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLND 87 (170)
T ss_dssp TTEEECTTSCCS-SCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred CCEEEeCCCCcC-ccCccCC--CCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECCC
Confidence 456667777666 3444442 5677777777777776677777777777777777777766666677777888888888
Q ss_pred CCCCCCCcccccccccccEEEccCCccccccc
Q 005040 295 NNLSGKIPKSLEALSHLKQFNVSHNRLEGEIP 326 (717)
Q Consensus 295 N~~~~~~~~~~~~l~~L~~L~l~~N~l~~~~p 326 (717)
|+|++..+..|..+++|+.|+|++|++++.++
T Consensus 88 N~l~~~~~~~~~~l~~L~~L~L~~N~~~c~c~ 119 (170)
T 3g39_A 88 NQLKSIPRGAFDNLKSLTHIWLLNNPWDCACS 119 (170)
T ss_dssp SCCCCCCTTTTTTCTTCCEEECCSSCBCTTBG
T ss_pred CccCEeCHHHhcCCCCCCEEEeCCCCCCCCch
Confidence 88876666677778888888888888877765
No 398
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=99.50 E-value=7.8e-14 Score=129.97 Aligned_cols=108 Identities=22% Similarity=0.286 Sum_probs=63.9
Q ss_pred CeEEccCCcCcccCCccccCCCCCCeEEccCCCCCCCCcccccCCcccccccccCccccCCCCccccccCccceEeccCC
Q 005040 216 LRINLSSNSLKGTLPSNIQKLNVLIDLDLSRNQLSSDIPSTIGTLKNLETLSLAGNQFQGPIPESVGNLISLESLDFSNN 295 (717)
Q Consensus 216 ~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~L~~N 295 (717)
+.+++++|.++ .+|..+. ++|+.|+|++|.|++..|..|..+++|++|+|++|+|++..+..|.++++|++|+|++|
T Consensus 15 ~~l~~~~n~l~-~iP~~~~--~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N 91 (174)
T 2r9u_A 15 TLVNCQNIRLA-SVPAGIP--TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDN 91 (174)
T ss_dssp SEEECCSSCCS-SCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred cEEEeCCCCCC-ccCCCcC--CCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECCCC
Confidence 44555555554 3343332 45666666666666555556666666666666666666544445566666666666666
Q ss_pred CCCCCCcccccccccccEEEccCCccccccc
Q 005040 296 NLSGKIPKSLEALSHLKQFNVSHNRLEGEIP 326 (717)
Q Consensus 296 ~~~~~~~~~~~~l~~L~~L~l~~N~l~~~~p 326 (717)
+|++..+..|..+++|+.|+|++|++.+.++
T Consensus 92 ~l~~l~~~~~~~l~~L~~L~L~~N~~~c~~~ 122 (174)
T 2r9u_A 92 HLKSIPRGAFDNLKSLTHIYLYNNPWDCECR 122 (174)
T ss_dssp CCCCCCTTTTTTCTTCSEEECCSSCBCTTBG
T ss_pred ccceeCHHHhccccCCCEEEeCCCCcccccc
Confidence 6665544556666666666666666665544
No 399
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=99.48 E-value=2.7e-12 Score=136.73 Aligned_cols=300 Identities=12% Similarity=0.134 Sum_probs=220.9
Q ss_pred cceecCCcCCCCCC-CCCEEEcccccccCccCCcccccccccccCccCCcEEeccCCC---CcccCCcchhcccccccee
Q 005040 23 SFSGHIPNTFGNLR-HLSVLSLMMNNLTTESSSADQWSFLSSLTNCRNLANLALASNP---LGGILPPLIGNFSASLQNI 98 (717)
Q Consensus 23 ~i~~~~~~~~~~l~-~L~~L~L~~n~l~~~~~~~~~~~~~~~l~~l~~L~~L~L~~N~---l~~~~~~~~~~l~~~L~~L 98 (717)
.++.+...+|.+.+ .|+.+.+-.+ ++.|...+ |.++.+|+.+.+..|. ++.+...+|... .+|+.+
T Consensus 50 ~Vt~Ig~~aF~~~~~~L~sI~iP~s-vt~Ig~~A--------F~~C~~L~~i~~~~n~p~~l~~Ig~~aF~~c-~~L~~i 119 (394)
T 4gt6_A 50 PVSKIGDRVFCNYKYVLTSVQIPDT-VTEIGSNA--------FYNCTSLKRVTIQDNKPSCVKKIGRQAFMFC-SELTDI 119 (394)
T ss_dssp EEEEECTTTTTTCCSCCCEEEECTT-CCEECTTT--------TTTCTTCCEEEEGGGCCCCCCEECTTTTTTC-TTCCBC
T ss_pred eeeEcCHhhccCCCCcCEEEEECCC-eeEEhHHH--------hhCCccCceEeecCCCCCeeeEechhhchhc-ccceee
Confidence 36677888999885 6999999754 88888766 8999999999998874 665666666654 568887
Q ss_pred eecCCcceecCCccccCCCCCcEEEccCCCCcccCCccccccCCCCEEeccCCcccccCCccccCCCCCCEEeccCCcCc
Q 005040 99 YAFECKLGGSIPKEIGNLRGLIVLSLGFNDLNGTIPTSIGTLQQLQGFYVPENNLQGYVPHDLCHLERLNILNLSGNKLS 178 (717)
Q Consensus 99 ~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~ 178 (717)
.+.++ +..+....|.++.+|+.+.+..+ +..+...+|.++.+|+.+.+..+ ++.+...+|.+ .+|+.+.+..+-..
T Consensus 120 ~~~~~-~~~I~~~aF~~c~~L~~i~lp~~-~~~I~~~~F~~c~~L~~i~~~~~-~~~I~~~aF~~-~~l~~i~ip~~~~~ 195 (394)
T 4gt6_A 120 PILDS-VTEIDSEAFHHCEELDTVTIPEG-VTSVADGMFSYCYSLHTVTLPDS-VTAIEERAFTG-TALTQIHIPAKVTR 195 (394)
T ss_dssp GGGTT-CSEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTT-CCCSEEEECTTCCE
T ss_pred ccCCc-cceehhhhhhhhcccccccccce-eeeecccceecccccccccccce-eeEeccccccc-cceeEEEECCcccc
Confidence 77654 55577788999999999999754 44467778999999999999765 55566777765 67999999876544
Q ss_pred ccCCccccCCCCCCeEEecCccccCCCChhh-------------hcccCCCeEEccCCcCcccCCccccCCCCCCeEEcc
Q 005040 179 GAIPQCLASLTSLRSLYLQSNKLSSSLPSSL-------------WSLEYILRINLSSNSLKGTLPSNIQKLNVLIDLDLS 245 (717)
Q Consensus 179 ~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~-------------~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~ 245 (717)
....+|.++.++.......+.........+ .....+..+.+. +.++.+...+|.++.+|+.+.+.
T Consensus 196 -i~~~af~~c~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ip-~~v~~i~~~aF~~c~~L~~i~lp 273 (394)
T 4gt6_A 196 -IGTNAFSECFALSTITSDSESYPAIDNVLYEKSANGDYALIRYPSQREDPAFKIP-NGVARIETHAFDSCAYLASVKMP 273 (394)
T ss_dssp -ECTTTTTTCTTCCEEEECCSSSCBSSSCEEEECTTSCEEEEECCTTCCCSEEECC-TTEEEECTTTTTTCSSCCEEECC
T ss_pred -cccchhhhccccceecccccccccccceeecccccccccccccccccccceEEcC-CcceEcccceeeecccccEEecc
Confidence 666788888899988877665542211111 122344455554 33444666789999999999998
Q ss_pred CCCCCCCCcccccCCcccccccccCccccCCCCccccccCccceEeccCCCCCCCCcccccccccccEEEccCCcccccc
Q 005040 246 RNQLSSDIPSTIGTLKNLETLSLAGNQFQGPIPESVGNLISLESLDFSNNNLSGKIPKSLEALSHLKQFNVSHNRLEGEI 325 (717)
Q Consensus 246 ~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~~~~~~~~~~l~~L~~L~l~~N~l~~~~ 325 (717)
++..+ +....|.++++|+.+.+. +.+..+...+|.++.+|+.++|..+ ++.+....|.++.+|+.+.+..+ ++. +
T Consensus 274 ~~~~~-I~~~aF~~c~~L~~i~l~-~~i~~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~C~~L~~i~ip~s-v~~-I 348 (394)
T 4gt6_A 274 DSVVS-IGTGAFMNCPALQDIEFS-SRITELPESVFAGCISLKSIDIPEG-ITQILDDAFAGCEQLERIAIPSS-VTK-I 348 (394)
T ss_dssp TTCCE-ECTTTTTTCTTCCEEECC-TTCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEEECTT-CCB-C
T ss_pred cccce-ecCcccccccccccccCC-CcccccCceeecCCCCcCEEEeCCc-ccEehHhHhhCCCCCCEEEECcc-cCE-E
Confidence 76554 677889999999999996 4566677889999999999999865 66577789999999999999765 432 2
Q ss_pred cc--cccccccccccccCCc
Q 005040 326 PV--KGSFKDFSAQSYFGNY 343 (717)
Q Consensus 326 p~--~~~~~~~~~~~~~~n~ 343 (717)
.. ...+..+....+.++.
T Consensus 349 ~~~aF~~C~~L~~i~~~~~~ 368 (394)
T 4gt6_A 349 PESAFSNCTALNNIEYSGSR 368 (394)
T ss_dssp CGGGGTTCTTCCEEEESSCH
T ss_pred hHhHhhCCCCCCEEEECCce
Confidence 22 2334455555555543
No 400
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=99.47 E-value=2.1e-13 Score=126.59 Aligned_cols=87 Identities=23% Similarity=0.288 Sum_probs=45.3
Q ss_pred CCCCEEeccCCcCcccCCccccCCCCCCeEEecCccccCCCChhhhcccCCCeEEccCCcCcccCCccccCCCCCCeEEc
Q 005040 165 ERLNILNLSGNKLSGAIPQCLASLTSLRSLYLQSNKLSSSLPSSLWSLEYILRINLSSNSLKGTLPSNIQKLNVLIDLDL 244 (717)
Q Consensus 165 ~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l 244 (717)
++|++|+|++|+|++..+..|.++++|++|+|++|+|++..+..|..+++|++|+|++|+|++..+..|..+++|+.|+|
T Consensus 30 ~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L 109 (170)
T 3g39_A 30 TTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDNQLKSIPRGAFDNLKSLTHIWL 109 (170)
T ss_dssp TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred CCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECCCCccCEeCHHHhcCCCCCCEEEe
Confidence 34444555555554444444555555555555555555444444455555555555555555444445555556666666
Q ss_pred cCCCCCC
Q 005040 245 SRNQLSS 251 (717)
Q Consensus 245 ~~N~l~~ 251 (717)
++|.++.
T Consensus 110 ~~N~~~c 116 (170)
T 3g39_A 110 LNNPWDC 116 (170)
T ss_dssp CSSCBCT
T ss_pred CCCCCCC
Confidence 6665553
No 401
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=99.46 E-value=1.7e-15 Score=159.22 Aligned_cols=183 Identities=15% Similarity=0.109 Sum_probs=97.4
Q ss_pred cCCcEEeccCCCCcccCCcchhcc----ccccceeeecCCcceecCCccc-cCCCCCcEEEccCCCCcccCCccc-----
Q 005040 68 RNLANLALASNPLGGILPPLIGNF----SASLQNIYAFECKLGGSIPKEI-GNLRGLIVLSLGFNDLNGTIPTSI----- 137 (717)
Q Consensus 68 ~~L~~L~L~~N~l~~~~~~~~~~l----~~~L~~L~l~~n~l~~~~~~~~-~~l~~L~~L~L~~n~l~~~~~~~~----- 137 (717)
++|++|+|++|.++......+... ..+|++|+|++|.++......+ ..+++|++|+|++|.|+......+
T Consensus 72 ~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~~L~~~L~ 151 (372)
T 3un9_A 72 SSLRQLNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPEACKDLRDLLL 151 (372)
T ss_dssp TTCCEEECTTSCCCHHHHHHHHHHHSSCSSCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSCCCHHHHHHHHHHHH
T ss_pred hhCCEEEecCCCCCHHHHHHHHHHHhhCCCCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCCCCHHHHHHHHHHHH
Confidence 344455555554443332222222 1234555555554443222222 223456667777776664433333
Q ss_pred cccCCCCEEeccCCcccccC----CccccCCCCCCEEeccCCcCcccC----CccccCCCCCCeEEecCccccCC----C
Q 005040 138 GTLQQLQGFYVPENNLQGYV----PHDLCHLERLNILNLSGNKLSGAI----PQCLASLTSLRSLYLQSNKLSSS----L 205 (717)
Q Consensus 138 ~~l~~L~~L~l~~n~i~~~~----~~~~~~l~~L~~L~L~~n~l~~~~----~~~~~~l~~L~~L~L~~N~l~~~----~ 205 (717)
...++|++|+|++|.|+... +..+..+++|++|+|++|.|++.. +..+...++|++|+|++|.|++. +
T Consensus 152 ~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N~i~~~g~~~l 231 (372)
T 3un9_A 152 HDQCQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNGAGDTAALAL 231 (372)
T ss_dssp STTCCCCEEECCSSCCHHHHHHHHHHHHHTCSSCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCSSCCCHHHHHHH
T ss_pred hcCCccceeeCCCCCCChHHHHHHHHHHhcCCCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCCCCCCHHHHHHH
Confidence 23466777777777776432 233456677777777777776432 34556667788888888877743 2
Q ss_pred ChhhhcccCCCeEEccCCcCcccCCccccCCCC-----CCeEE--ccCCCCC
Q 005040 206 PSSLWSLEYILRINLSSNSLKGTLPSNIQKLNV-----LIDLD--LSRNQLS 250 (717)
Q Consensus 206 ~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~-----L~~L~--l~~N~l~ 250 (717)
+..+...++|++|+|++|.|+......+..+.. |+.+. +..|.++
T Consensus 232 ~~~L~~~~~L~~L~Ls~N~i~~~g~~~L~~~~~~~~~~L~~l~~ll~~~~~~ 283 (372)
T 3un9_A 232 ARAAREHPSLELLHLYFNELSSEGRQVLRDLGGAAEGGARVVVSLTEGTAVS 283 (372)
T ss_dssp HHHHHHCSSCCEEECTTSSCCHHHHHHHHHCC------CEEECCCC----CH
T ss_pred HHHHHhCCCCCEEeccCCCCCHHHHHHHHHHhcCCCccchhhHhhhcCCccC
Confidence 334445677888888888887544444433321 55555 5555554
No 402
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=99.45 E-value=1.3e-15 Score=160.04 Aligned_cols=134 Identities=18% Similarity=0.155 Sum_probs=61.5
Q ss_pred CCCcEEEccCCCCcccCCcccccc-----CCCCEEeccCCcccccCCcccc-CCCCCCEEeccCCcCcccCCccc-----
Q 005040 117 RGLIVLSLGFNDLNGTIPTSIGTL-----QQLQGFYVPENNLQGYVPHDLC-HLERLNILNLSGNKLSGAIPQCL----- 185 (717)
Q Consensus 117 ~~L~~L~L~~n~l~~~~~~~~~~l-----~~L~~L~l~~n~i~~~~~~~~~-~l~~L~~L~L~~n~l~~~~~~~~----- 185 (717)
++|++|+|++|.++......+... ++|++|+|++|.|+......+. .+++|+.|+|++|.|++.....+
T Consensus 72 ~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~~L~~~L~ 151 (372)
T 3un9_A 72 SSLRQLNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPEACKDLRDLLL 151 (372)
T ss_dssp TTCCEEECTTSCCCHHHHHHHHHHHSSCSSCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSCCCHHHHHHHHHHHH
T ss_pred hhCCEEEecCCCCCHHHHHHHHHHHhhCCCCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCCCCHHHHHHHHHHHH
Confidence 456666666666654333333222 4566666666655533222221 23455566666665553322222
Q ss_pred cCCCCCCeEEecCccccCC----CChhhhcccCCCeEEccCCcCcccC----CccccCCCCCCeEEccCCCCC
Q 005040 186 ASLTSLRSLYLQSNKLSSS----LPSSLWSLEYILRINLSSNSLKGTL----PSNIQKLNVLIDLDLSRNQLS 250 (717)
Q Consensus 186 ~~l~~L~~L~L~~N~l~~~----~~~~~~~l~~L~~L~l~~N~l~~~~----~~~~~~l~~L~~L~l~~N~l~ 250 (717)
...++|++|+|++|.|++. ++..+..+++|++|+|++|.|++.. +..+...++|+.|+|++|.|+
T Consensus 152 ~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N~i~ 224 (372)
T 3un9_A 152 HDQCQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNGAG 224 (372)
T ss_dssp STTCCCCEEECCSSCCHHHHHHHHHHHHHTCSSCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCSSCCC
T ss_pred hcCCccceeeCCCCCCChHHHHHHHHHHhcCCCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCCCCCC
Confidence 1234555555555555421 2222334445555555555544211 223333444444444444444
No 403
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=99.45 E-value=3.7e-13 Score=125.33 Aligned_cols=86 Identities=24% Similarity=0.337 Sum_probs=43.8
Q ss_pred CCCCEEeccCCcCcccCCccccCCCCCCeEEecCccccCCCChhhhcccCCCeEEccCCcCcccCCccccCCCCCCeEEc
Q 005040 165 ERLNILNLSGNKLSGAIPQCLASLTSLRSLYLQSNKLSSSLPSSLWSLEYILRINLSSNSLKGTLPSNIQKLNVLIDLDL 244 (717)
Q Consensus 165 ~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l 244 (717)
++|++|+|++|+|++..|..|.++++|+.|+|++|+|++..+..|..+++|++|+|++|+|++..+..|..+++|+.|+|
T Consensus 33 ~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~L 112 (174)
T 2r9u_A 33 TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDNHLKSIPRGAFDNLKSLTHIYL 112 (174)
T ss_dssp TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCSEEEC
T ss_pred CCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECCCCccceeCHHHhccccCCCEEEe
Confidence 34444444444444444444444455555555555554443334445555555555555555444444555556666666
Q ss_pred cCCCCC
Q 005040 245 SRNQLS 250 (717)
Q Consensus 245 ~~N~l~ 250 (717)
++|.+.
T Consensus 113 ~~N~~~ 118 (174)
T 2r9u_A 113 YNNPWD 118 (174)
T ss_dssp CSSCBC
T ss_pred CCCCcc
Confidence 666655
No 404
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=99.36 E-value=5e-11 Score=126.25 Aligned_cols=290 Identities=8% Similarity=0.053 Sum_probs=188.1
Q ss_pred ccCCCCCcEEECCCCcceecCCcCCCCCCCCCEEEcccccccCccCCcccccccccccCccCCcEEeccCCCCcccCCcc
Q 005040 8 ITNATKLIGLDLGLNSFSGHIPNTFGNLRHLSVLSLMMNNLTTESSSADQWSFLSSLTNCRNLANLALASNPLGGILPPL 87 (717)
Q Consensus 8 ~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~ 87 (717)
+....+|+.+.+... ++.+...+|.++.+|+.++|..+ ++.+...+ |.++ +|+.+.+..+ +..+...+
T Consensus 42 ~~~~~~i~~v~ip~~-vt~Ig~~aF~~C~~L~~I~lp~~-v~~Ig~~a--------F~~c-~l~~i~~~~~-l~~I~~~a 109 (379)
T 4h09_A 42 YKDRDRISEVRVNSG-ITSIGEANFNSCYNMTKVTVAST-VTSIGDGA--------FADT-KLQSYTGMER-VKKFGDYV 109 (379)
T ss_dssp GGGGGGCSEEEECTT-EEEECTTTTTTCTTCCEEEECTT-CCEECTTT--------TTTC-CCCEEEECTT-CCEECTTT
T ss_pred cccccCCEEEEeCCC-ccChHHHHhhCCCCCCEEEeCCc-ceEechhh--------hcCC-CCceEECCce-eeEeccce
Confidence 445677888888754 77788889999999999999654 88887665 6665 5777777644 55455555
Q ss_pred hhccccccceeeecCCcceecCCccccCCCCCcEEEccCCCCcccCCccccccCCCCEEeccCCccccc-----------
Q 005040 88 IGNFSASLQNIYAFECKLGGSIPKEIGNLRGLIVLSLGFNDLNGTIPTSIGTLQQLQGFYVPENNLQGY----------- 156 (717)
Q Consensus 88 ~~~l~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~i~~~----------- 156 (717)
|.. .+|+.+.+..+ +.......|.+. +|+.+.+..+ ++.+....|..+.+++.+.+..+.....
T Consensus 110 F~~--~~L~~i~lp~~-~~~i~~~~F~~~-~l~~~~~~~~-v~~i~~~~f~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 184 (379)
T 4h09_A 110 FQG--TDLDDFEFPGA-TTEIGNYIFYNS-SVKRIVIPKS-VTTIKDGIGYKAENLEKIEVSSNNKNYVAENYVLYNKNK 184 (379)
T ss_dssp TTT--CCCSEEECCTT-CCEECTTTTTTC-CCCEEEECTT-CCEECSCTTTTCTTCCEEEECTTCSSEEEETTEEEETTS
T ss_pred ecc--CCcccccCCCc-cccccccccccc-eeeeeeccce-eeccccchhcccccccccccccccceeecccceeccccc
Confidence 544 36888888654 333445556554 5666665543 4445566777777777777665433211
Q ss_pred -CCccccCCCCCCEEeccCCcCcccCCccccCCCCCCeEEecCccccCCCChhhhcccCCCeEEccCCcCcccCCccccC
Q 005040 157 -VPHDLCHLERLNILNLSGNKLSGAIPQCLASLTSLRSLYLQSNKLSSSLPSSLWSLEYILRINLSSNSLKGTLPSNIQK 235 (717)
Q Consensus 157 -~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~ 235 (717)
....+.....+..+.+..+... .....+....+|+.+.+..+ +.......|.++.+|+.+.+..+ ++.+...+|.+
T Consensus 185 ~~~~~~~~~~~~~~~~~~~~~~~-i~~~~f~~~~~l~~i~~~~~-~~~i~~~~f~~~~~L~~i~lp~~-v~~I~~~aF~~ 261 (379)
T 4h09_A 185 TILESYPAAKTGTEFTIPSTVKT-VTAYGFSYGKNLKKITITSG-VTTLGDGAFYGMKALDEIAIPKN-VTSIGSFLLQN 261 (379)
T ss_dssp SEEEECCTTCCCSEEECCTTCCE-ECTTTTTTCSSCSEEECCTT-CCEECTTTTTTCSSCCEEEECTT-CCEECTTTTTT
T ss_pred ceeccccccccccccccccceeE-Eeecccccccccceeeeccc-eeEEccccccCCccceEEEcCCC-ccEeCccccce
Confidence 1123344455556555544332 44455666777777777654 33355566777777777777665 55566667777
Q ss_pred CCCCCeEEccCCCCCCCCcccccCCcccccccccCccccCCCCccccccCccceEeccCCCCCCCCcccccccccccEEE
Q 005040 236 LNVLIDLDLSRNQLSSDIPSTIGTLKNLETLSLAGNQFQGPIPESVGNLISLESLDFSNNNLSGKIPKSLEALSHLKQFN 315 (717)
Q Consensus 236 l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~~~~~~~~~~l~~L~~L~ 315 (717)
+.+|+.+.+..+ ++.+....|.++.+|+.+.+.++.++.+...+|.++.+|+.+.|..+ ++.+...+|.++.+|+.+.
T Consensus 262 ~~~l~~i~l~~~-i~~i~~~aF~~c~~L~~i~l~~~~i~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~C~~L~~i~ 339 (379)
T 4h09_A 262 CTALKTLNFYAK-VKTVPYLLCSGCSNLTKVVMDNSAIETLEPRVFMDCVKLSSVTLPTA-LKTIQVYAFKNCKALSTIS 339 (379)
T ss_dssp CTTCCEEEECCC-CSEECTTTTTTCTTCCEEEECCTTCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCCCC
T ss_pred eehhcccccccc-ceeccccccccccccccccccccccceehhhhhcCCCCCCEEEcCcc-ccEEHHHHhhCCCCCCEEE
Confidence 777777777544 44455566777777777777777776666677777777777777654 5545566777777777777
Q ss_pred ccCC
Q 005040 316 VSHN 319 (717)
Q Consensus 316 l~~N 319 (717)
+..+
T Consensus 340 ip~~ 343 (379)
T 4h09_A 340 YPKS 343 (379)
T ss_dssp CCTT
T ss_pred ECCc
Confidence 6543
No 405
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=99.32 E-value=2.5e-12 Score=134.62 Aligned_cols=103 Identities=22% Similarity=0.238 Sum_probs=56.1
Q ss_pred eEEecCc-cccCCCChhhhcccCCCeEEccC-CcCcccCCccccCCCCCCeEEccCCCCCCCCcccccCCcccccccccC
Q 005040 193 SLYLQSN-KLSSSLPSSLWSLEYILRINLSS-NSLKGTLPSNIQKLNVLIDLDLSRNQLSSDIPSTIGTLKNLETLSLAG 270 (717)
Q Consensus 193 ~L~L~~N-~l~~~~~~~~~~l~~L~~L~l~~-N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~ 270 (717)
.++++++ .|+ .+|. +..+++|+.|+|++ |.|++..+..|.++++|+.|+|++|.|++..|..|..+++|+.|+|++
T Consensus 12 ~v~~~~~n~l~-~ip~-l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~ 89 (347)
T 2ifg_A 12 GLRCTRDGALD-SLHH-LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSF 89 (347)
T ss_dssp CEECCSSCCCT-TTTT-SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCS
T ss_pred EEEcCCCCCCC-ccCC-CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCCC
Confidence 3455555 555 2444 55555566666654 555555555555555555555555555555555555555555555555
Q ss_pred ccccCCCCccccccCccceEeccCCCCC
Q 005040 271 NQFQGPIPESVGNLISLESLDFSNNNLS 298 (717)
Q Consensus 271 N~l~~~~~~~~~~l~~L~~L~L~~N~~~ 298 (717)
|+|++..+..|..++ |+.|+|++|++.
T Consensus 90 N~l~~~~~~~~~~~~-L~~l~l~~N~~~ 116 (347)
T 2ifg_A 90 NALESLSWKTVQGLS-LQELVLSGNPLH 116 (347)
T ss_dssp SCCSCCCSTTTCSCC-CCEEECCSSCCC
T ss_pred CccceeCHHHcccCC-ceEEEeeCCCcc
Confidence 555544444444433 555555555554
No 406
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=99.30 E-value=1.8e-10 Score=121.87 Aligned_cols=131 Identities=10% Similarity=0.094 Sum_probs=58.0
Q ss_pred ccccCCCCCCEEeccCCcCcccCCccccCCCCCCeEEecCccccCCCChhhhcccCCCeEEccCCcCcccCCccccCCCC
Q 005040 159 HDLCHLERLNILNLSGNKLSGAIPQCLASLTSLRSLYLQSNKLSSSLPSSLWSLEYILRINLSSNSLKGTLPSNIQKLNV 238 (717)
Q Consensus 159 ~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~ 238 (717)
..+....+|+.+.+..+ +..+....|.++..|+.+.+..+ ++.+....|.++.+|+.+.+..+ ++......|.++.+
T Consensus 211 ~~f~~~~~l~~i~~~~~-~~~i~~~~f~~~~~L~~i~lp~~-v~~I~~~aF~~~~~l~~i~l~~~-i~~i~~~aF~~c~~ 287 (379)
T 4h09_A 211 YGFSYGKNLKKITITSG-VTTLGDGAFYGMKALDEIAIPKN-VTSIGSFLLQNCTALKTLNFYAK-VKTVPYLLCSGCSN 287 (379)
T ss_dssp TTTTTCSSCSEEECCTT-CCEECTTTTTTCSSCCEEEECTT-CCEECTTTTTTCTTCCEEEECCC-CSEECTTTTTTCTT
T ss_pred cccccccccceeeeccc-eeEEccccccCCccceEEEcCCC-ccEeCccccceeehhcccccccc-ceeccccccccccc
Confidence 33444444444444433 22233334444444555544443 33233344444445555544332 33233344444455
Q ss_pred CCeEEccCCCCCCCCcccccCCcccccccccCccccCCCCccccccCccceEecc
Q 005040 239 LIDLDLSRNQLSSDIPSTIGTLKNLETLSLAGNQFQGPIPESVGNLISLESLDFS 293 (717)
Q Consensus 239 L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~L~ 293 (717)
|+.+.+.++.++.+....|.++.+|+.+.|..+ ++.+...+|.++.+|+.+.+.
T Consensus 288 L~~i~l~~~~i~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~C~~L~~i~ip 341 (379)
T 4h09_A 288 LTKVVMDNSAIETLEPRVFMDCVKLSSVTLPTA-LKTIQVYAFKNCKALSTISYP 341 (379)
T ss_dssp CCEEEECCTTCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCCCCCC
T ss_pred cccccccccccceehhhhhcCCCCCCEEEcCcc-ccEEHHHHhhCCCCCCEEEEC
Confidence 555555444444444444444555555554332 333334444444455544443
No 407
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=99.28 E-value=4.5e-12 Score=132.59 Aligned_cols=103 Identities=24% Similarity=0.296 Sum_probs=74.6
Q ss_pred EEeccCC-cCcccCCccccCCCCCCeEEecC-ccccCCCChhhhcccCCCeEEccCCcCcccCCccccCCCCCCeEEccC
Q 005040 169 ILNLSGN-KLSGAIPQCLASLTSLRSLYLQS-NKLSSSLPSSLWSLEYILRINLSSNSLKGTLPSNIQKLNVLIDLDLSR 246 (717)
Q Consensus 169 ~L~L~~n-~l~~~~~~~~~~l~~L~~L~L~~-N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~ 246 (717)
.++++++ +|+. +|. +..+++|+.|+|++ |+|++..+..|.++++|+.|+|++|+|++..|..|.++++|+.|+|++
T Consensus 12 ~v~~~~~n~l~~-ip~-l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~ 89 (347)
T 2ifg_A 12 GLRCTRDGALDS-LHH-LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSF 89 (347)
T ss_dssp CEECCSSCCCTT-TTT-SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCS
T ss_pred EEEcCCCCCCCc-cCC-CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCCC
Confidence 4677776 7773 555 77777777777775 777766666777777777777777777777777777777777777777
Q ss_pred CCCCCCCcccccCCcccccccccCcccc
Q 005040 247 NQLSSDIPSTIGTLKNLETLSLAGNQFQ 274 (717)
Q Consensus 247 N~l~~~~~~~~~~l~~L~~L~l~~N~l~ 274 (717)
|+|++..+..|..++ |+.|+|++|++.
T Consensus 90 N~l~~~~~~~~~~~~-L~~l~l~~N~~~ 116 (347)
T 2ifg_A 90 NALESLSWKTVQGLS-LQELVLSGNPLH 116 (347)
T ss_dssp SCCSCCCSTTTCSCC-CCEEECCSSCCC
T ss_pred CccceeCHHHcccCC-ceEEEeeCCCcc
Confidence 777765555555555 777777777776
No 408
>3tm0_A Aminoglycoside 3'-phosphotransferase; protein kinase, phosphorylation, transferase-antibiotic COMP; HET: ANP B31; 2.10A {Enterococcus faecalis} SCOP: d.144.1.6 PDB: 2b0q_A* 1l8t_A* 3q2j_A* 1j7i_A* 1j7u_A* 3h8p_A* 1j7l_A* 2bkk_A*
Probab=99.22 E-value=2.6e-11 Score=121.43 Aligned_cols=148 Identities=14% Similarity=0.125 Sum_probs=115.0
Q ss_pred HHHHhccCCccccccccccEEEEEEEecCCCeEEEEEechhhHHHHHHHHHHHHHHHhcC-CCceeeEeeeeecCCeeEE
Q 005040 422 IRRATDEFNECNLLGTGGFGSVYKGTLSDGTNVAIKIFNLQLERAFRSFDSECEILRNVR-HRNLLKILGSCSNLDFKAL 500 (717)
Q Consensus 422 ~~~~~~~~~~~~~lg~G~~g~V~~~~~~~~~~vavK~~~~~~~~~~~~~~~e~~~l~~l~-hpniv~~~~~~~~~~~~~l 500 (717)
++....+|+....++.|+.+.||++... ++.+++|+...........+.+|.++++.+. +..+.++++++.+.+..|+
T Consensus 9 l~~~l~~~~~~~~~~g~s~~~v~~~~~~-~~~~vlK~~~~~~~~~~~~~~~E~~~l~~l~~~~~vP~v~~~~~~~~~~~l 87 (263)
T 3tm0_A 9 LKKLIEKYRCVKDTEGMSPAKVYKLVGE-NENLYLKMTDSRYKGTTYDVEREKDMMLWLEGKLPVPKVLHFERHDGWSNL 87 (263)
T ss_dssp HHHHHTTSEEEECCSCCSSSEEEEEECS-SCEEEEEEECGGGTTSTTCHHHHHHHHHHHTTTSCCCCEEEEEEETTEEEE
T ss_pred HHHHhccceeEeeccCCCCCeEEEEECC-CCcEEEEeCCcccCCCHHHHHHHHHHHHHHhcCCCCCeEEEEEecCCceEE
Confidence 3445567888888888899999999864 6889999987533222345788999999984 6778899999988889999
Q ss_pred EEEccCCCCHHHHHhhCCCCCCHHHHHHHHHHHHHHHHHHhhcC------------------------------------
Q 005040 501 VLEFMPNGSLEKWLYSHNYFLDILQRLNIMIDVGSALEYLHHCH------------------------------------ 544 (717)
Q Consensus 501 v~e~~~~g~L~~~l~~~~~~~~~~~~~~i~~~i~~~l~~LH~~~------------------------------------ 544 (717)
||||++|.+|.+.+.. ......++.++++++..||...
T Consensus 88 v~e~i~G~~l~~~~~~------~~~~~~~~~~l~~~l~~LH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 161 (263)
T 3tm0_A 88 LMSEADGVLCSEEYED------EQSPEKIIELYAECIRLFHSIDISDCPYTNSLDSRLAELDYLLNNDLADVDCENWEED 161 (263)
T ss_dssp EEECCSSEEHHHHCCT------TTCHHHHHHHHHHHHHHHHHSCCTTCSCBCCHHHHHHHHHHHHHTTCSCCSGGGGSTT
T ss_pred EEEecCCeehhhccCC------cccHHHHHHHHHHHHHHHhCCCcccCCCcchHHHHHHHHHHHHhcccccccccccccc
Confidence 9999999999876321 1223467889999999999721
Q ss_pred -------------------CCCCeEecCCCCCCeeeCCCCcEEEeeecccc
Q 005040 545 -------------------SSAPIIHCDLKPTNILLDENMVAHVSDFGISK 576 (717)
Q Consensus 545 -------------------~~~~ivH~dlk~~Nill~~~~~~kl~Dfgl~~ 576 (717)
....++|+|+++.||+++.+..+.|+||+.+.
T Consensus 162 ~~~~~~~~l~~~l~~~~~~~~~~l~HgDl~~~Nil~~~~~~~~lIDwe~a~ 212 (263)
T 3tm0_A 162 TPFKDPRELYDFLKTEKPEEELVFSHGDLGDSNIFVKDGKVSGFIDLGRSG 212 (263)
T ss_dssp CSSSSHHHHHHHHHHCCCCCCEEEECSSCCTTSEEEETTEEEEECCCTTCE
T ss_pred ccCCCHHHHHHHHHhcCCCCCceEECCCCCcCcEEEECCcEEEEEEchhcc
Confidence 01458999999999999876667799998764
No 409
>1nd4_A Aminoglycoside 3'-phosphotransferase; protein kinase, ATPase, kanamycin; HET: KAN; 2.10A {Klebsiella pneumoniae} SCOP: d.144.1.6
Probab=99.07 E-value=1.4e-10 Score=115.93 Aligned_cols=139 Identities=14% Similarity=0.096 Sum_probs=100.7
Q ss_pred ccCCccccccccccEEEEEEEecCCCeEEEEEechhhHHHHHHHHHHHHHHHhcCCCc--eeeEeeeeecCCeeEEEEEc
Q 005040 427 DEFNECNLLGTGGFGSVYKGTLSDGTNVAIKIFNLQLERAFRSFDSECEILRNVRHRN--LLKILGSCSNLDFKALVLEF 504 (717)
Q Consensus 427 ~~~~~~~~lg~G~~g~V~~~~~~~~~~vavK~~~~~~~~~~~~~~~e~~~l~~l~hpn--iv~~~~~~~~~~~~~lv~e~ 504 (717)
.++......+.|..+.||++...+|+.+++|+.... ....+.+|+++++.+++.+ +.+++++..+.+..++||||
T Consensus 20 ~~~~~~~~~~gg~~~~v~~~~~~~g~~~vlK~~~~~---~~~~~~~E~~~l~~l~~~~~~vP~~~~~~~~~~~~~~v~e~ 96 (264)
T 1nd4_A 20 FGYDWAQQTIGCSDAAVFRLSAQGRPVLFVKTDLSG---ALNELQDEAARLSWLATTGVPCAAVLDVVTEAGRDWLLLGE 96 (264)
T ss_dssp TTCEEEECSCTTSSCEEEEEECTTSCCEEEEEECSC---TTSCHHHHHHHHHHHHTTTCCBCCEEEEEECSSCEEEEEEC
T ss_pred CCCceEecccCCCCceEEEEecCCCCeEEEEeCCcc---cchhhhHHHHHHHHHHhCCCCCCeEEEeccCCCCCEEEEEe
Confidence 344443333456669999998777888999987643 2245677999999986444 55688888877888999999
Q ss_pred cCCCCHHHHHhhCCCCCCHHHHHHHHHHHHHHHHHHhhcCC---------------------------------------
Q 005040 505 MPNGSLEKWLYSHNYFLDILQRLNIMIDVGSALEYLHHCHS--------------------------------------- 545 (717)
Q Consensus 505 ~~~g~L~~~l~~~~~~~~~~~~~~i~~~i~~~l~~LH~~~~--------------------------------------- 545 (717)
++|.++. ... .+ ...++.++++.+..||....
T Consensus 97 i~G~~l~--~~~----~~---~~~~~~~l~~~l~~lh~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 167 (264)
T 1nd4_A 97 VPGQDLL--SSH----LA---PAEKVSIMADAMRRLHTLDPATCPFDHQAKHRIERARTRMEAGLVDQDDLDEEHQGLAP 167 (264)
T ss_dssp CSSEETT--TSC----CC---HHHHHHHHHHHHHHHTTSCGGGCCCBCCHHHHHHHHHHHHHTTCCCTTSCCGGGTTCCH
T ss_pred cCCcccC--cCc----CC---HhHHHHHHHHHHHHHhCCCCCCCCCchHHHHHHHHHHHHHhcCCccchhhhhhccCccH
Confidence 9998884 211 12 23567788888888885320
Q ss_pred ---------------CCCeEecCCCCCCeeeCCCCcEEEeeeccccc
Q 005040 546 ---------------SAPIIHCDLKPTNILLDENMVAHVSDFGISKL 577 (717)
Q Consensus 546 ---------------~~~ivH~dlk~~Nill~~~~~~kl~Dfgl~~~ 577 (717)
...++|+|++|.||+++.++.+.|+|||.+..
T Consensus 168 ~~~~~~l~~~~~~~~~~~l~HgDl~~~Nil~~~~~~~~liD~~~a~~ 214 (264)
T 1nd4_A 168 AELFARLKARMPDGEDLVVTHGDACLPNIMVENGRFSGFIDCGRLGV 214 (264)
T ss_dssp HHHHHHHHHTCCSSCCEEEECSSCCGGGEEEETTEEEEECCCTTCEE
T ss_pred HHHHHHHHHhcCCCCCeEEECCCCCCCcEEEECCcEEEEEcchhccc
Confidence 11299999999999998876677999997653
No 410
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=99.05 E-value=5.6e-11 Score=123.62 Aligned_cols=154 Identities=21% Similarity=0.260 Sum_probs=70.4
Q ss_pred ccCCCCCCEEeccCCc-CcccCCccccCCCCCCeEEecCccccCCCChhhh--cccCCCeEEccC--CcCccc-----CC
Q 005040 161 LCHLERLNILNLSGNK-LSGAIPQCLASLTSLRSLYLQSNKLSSSLPSSLW--SLEYILRINLSS--NSLKGT-----LP 230 (717)
Q Consensus 161 ~~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~--~l~~L~~L~l~~--N~l~~~-----~~ 230 (717)
+..+++|+.|+|++|. +. .+. +. +++|+.|+|..|.+.......+. .+++|++|+|+. |...+. +.
T Consensus 168 l~~~P~L~~L~L~g~~~l~--l~~-~~-~~~L~~L~L~~~~l~~~~l~~l~~~~lp~L~~L~L~~~~~~~~~~~~~~~l~ 243 (362)
T 2ra8_A 168 LDAMPLLNNLKIKGTNNLS--IGK-KP-RPNLKSLEIISGGLPDSVVEDILGSDLPNLEKLVLYVGVEDYGFDGDMNVFR 243 (362)
T ss_dssp HHTCTTCCEEEEECCBTCB--CCS-CB-CTTCSEEEEECSBCCHHHHHHHHHSBCTTCCEEEEECBCGGGTCCSCGGGTG
T ss_pred HhcCCCCcEEEEeCCCCce--ecc-cc-CCCCcEEEEecCCCChHHHHHHHHccCCCCcEEEEeccccccccchhHHHHH
Confidence 3455566666665552 21 111 22 55666666666555432222232 455666666542 111100 00
Q ss_pred ccc--cCCCCCCeEEccCCCCCCCCcccc---cCCcccccccccCccccCCC----CccccccCccceEeccCCCCCCCC
Q 005040 231 SNI--QKLNVLIDLDLSRNQLSSDIPSTI---GTLKNLETLSLAGNQFQGPI----PESVGNLISLESLDFSNNNLSGKI 301 (717)
Q Consensus 231 ~~~--~~l~~L~~L~l~~N~l~~~~~~~~---~~l~~L~~L~l~~N~l~~~~----~~~~~~l~~L~~L~L~~N~~~~~~ 301 (717)
..+ ..+++|+.|+|++|.+.+..+..+ ..+++|++|+|+.|.+.+.. +..+..+++|+.|+|++|.|+...
T Consensus 244 ~~l~~~~~p~Lr~L~L~~~~i~~~~~~~la~a~~~~~L~~LdLs~n~L~d~G~~~L~~~L~~l~~L~~L~L~~n~i~d~~ 323 (362)
T 2ra8_A 244 PLFSKDRFPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAGVLTDEGARLLLDHVDKIKHLKFINMKYNYLSDEM 323 (362)
T ss_dssp GGSCTTTCTTCCEEEEESCTTHHHHHHHHHHCSSGGGCSEEECCSSCCBHHHHHHHHTTHHHHTTCSEEECCSBBCCHHH
T ss_pred HHHhcCCCCCcCEEeCCCCCCchHHHHHHHhCccCCCCCEEECCCCCCChHHHHHHHhhcccCCcceEEECCCCcCCHHH
Confidence 111 235566666666666553222222 13556666666666665432 222234556666666666555332
Q ss_pred cccccc-cccccEEEccCCc
Q 005040 302 PKSLEA-LSHLKQFNVSHNR 320 (717)
Q Consensus 302 ~~~~~~-l~~L~~L~l~~N~ 320 (717)
-..+.. + ...+++++++
T Consensus 324 ~~~l~~al--g~~~~~~~~~ 341 (362)
T 2ra8_A 324 KKELQKSL--PMKIDVSDSQ 341 (362)
T ss_dssp HHHHHHHC--CSEEECCSBC
T ss_pred HHHHHHHc--CCEEEecCCc
Confidence 222322 1 2345555554
No 411
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=99.05 E-value=6.4e-11 Score=123.22 Aligned_cols=57 Identities=21% Similarity=0.189 Sum_probs=25.7
Q ss_pred ccCCCCCcEEEccCCC-CcccCCccccccCCCCEEeccCCcccccCCcccc--CCCCCCEEecc
Q 005040 113 IGNLRGLIVLSLGFND-LNGTIPTSIGTLQQLQGFYVPENNLQGYVPHDLC--HLERLNILNLS 173 (717)
Q Consensus 113 ~~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~--~l~~L~~L~L~ 173 (717)
+..+|+|+.|+|++|. +. .+. +. +++|++|+|..|.+.......++ .+++|+.|+|+
T Consensus 168 l~~~P~L~~L~L~g~~~l~--l~~-~~-~~~L~~L~L~~~~l~~~~l~~l~~~~lp~L~~L~L~ 227 (362)
T 2ra8_A 168 LDAMPLLNNLKIKGTNNLS--IGK-KP-RPNLKSLEIISGGLPDSVVEDILGSDLPNLEKLVLY 227 (362)
T ss_dssp HHTCTTCCEEEEECCBTCB--CCS-CB-CTTCSEEEEECSBCCHHHHHHHHHSBCTTCCEEEEE
T ss_pred HhcCCCCcEEEEeCCCCce--ecc-cc-CCCCcEEEEecCCCChHHHHHHHHccCCCCcEEEEe
Confidence 3445555555555542 21 111 22 45555555555555433222222 44555555553
No 412
>3dxp_A Putative acyl-COA dehydrogenase; protein kinase-like fold, structural genomics, joint center structural genomics, JCSG; 2.32A {Ralstonia eutropha JMP134}
Probab=98.89 E-value=3e-09 Score=111.57 Aligned_cols=143 Identities=14% Similarity=0.199 Sum_probs=106.3
Q ss_pred ccccccccccEEEEEEEecCCCeEEEEEec--hhh-HHHHHHHHHHHHHHHhcC--CCceeeEeeeeecC---CeeEEEE
Q 005040 431 ECNLLGTGGFGSVYKGTLSDGTNVAIKIFN--LQL-ERAFRSFDSECEILRNVR--HRNLLKILGSCSNL---DFKALVL 502 (717)
Q Consensus 431 ~~~~lg~G~~g~V~~~~~~~~~~vavK~~~--~~~-~~~~~~~~~e~~~l~~l~--hpniv~~~~~~~~~---~~~~lv~ 502 (717)
.++.++.|.++.||+.... +..+++|+.. ... ......+.+|.++++.+. +..+.++++++.+. +..|+||
T Consensus 42 ~~~~l~~G~sn~~y~v~~~-~~~~vlr~~~~p~~~~~~~~~~~~~E~~~l~~L~~~~vpvP~~~~~~~~~~~~g~~~~vm 120 (359)
T 3dxp_A 42 SVEQFKGGQSNPTFKLVTP-GQTYVMRAKPGPKSKLLPSAHAIEREYRVMDALAGTDVPVAKMYALCEDESVIGRAFYIM 120 (359)
T ss_dssp EEEECCC-CCSCEEEEECS-SCEEEEECCCC----------CHHHHHHHHHHHTTSSSCCCCEEEEECCTTTTSSCEEEE
T ss_pred eEEEcCCcccceEEEEEEC-CceEEEEeCCCCCCCCCCcHHHHHHHHHHHHHhhcCCCCCCcEEEECCCCCccCCeEEEE
Confidence 3567899999999999875 4678888876 332 123356788999999996 45678888888766 4579999
Q ss_pred EccCCCCHHHHHhhCCCCCCHHHHHHHHHHHHHHHHHHhhcCC-------------------------------------
Q 005040 503 EFMPNGSLEKWLYSHNYFLDILQRLNIMIDVGSALEYLHHCHS------------------------------------- 545 (717)
Q Consensus 503 e~~~~g~L~~~l~~~~~~~~~~~~~~i~~~i~~~l~~LH~~~~------------------------------------- 545 (717)
||++|..+.+. .-..++...+..++.++++.|..||....
T Consensus 121 e~v~G~~l~~~---~~~~l~~~~~~~~~~~l~~~La~LH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 197 (359)
T 3dxp_A 121 EFVSGRVLWDQ---SLPGMSPAERTAIYDEMNRVIAAMHTVDYQAIGLGDYGKPGNYFQRQIERWTKQYKLSETESIPAM 197 (359)
T ss_dssp ECCCCBCCCCT---TCTTCCHHHHHHHHHHHHHHHHHHHHSCTTTTTCTTSSCCSCHHHHHHHHHHHHHHHHCCSCCHHH
T ss_pred EecCCeecCCC---ccccCCHHHHHHHHHHHHHHHHHHhCCCchhccccccCCCCCchHHHHHHHHHHHHhcCCcCChHH
Confidence 99998777431 11226778888899999999999996310
Q ss_pred -----------------CCCeEecCCCCCCeeeCCCCc--EEEeeeccccc
Q 005040 546 -----------------SAPIIHCDLKPTNILLDENMV--AHVSDFGISKL 577 (717)
Q Consensus 546 -----------------~~~ivH~dlk~~Nill~~~~~--~kl~Dfgl~~~ 577 (717)
...++|||+++.||+++.++. +.+.||+.+..
T Consensus 198 ~~~~~~l~~~~~~~~~~~~~lvHgD~~~~Nil~~~~~~~v~~viDwe~a~~ 248 (359)
T 3dxp_A 198 DSLMDWLPQHIPQEDADLTSIVHGDYRLDNLMFHPTEPRVLAVLDWELSTL 248 (359)
T ss_dssp HHHHHHGGGCCCSTTSSCCEEECSSCSGGGEEECSSSSCEEEECCCTTCEE
T ss_pred HHHHHHHHhcCCCccCCCceEEeCCCCCCcEEEeCCCCcEEEEECcccccc
Confidence 246999999999999997753 68999998864
No 413
>3sg8_A APH(2'')-ID; antibiotic resistance enzyme, transferase, aminoglycoside, phosphorylation, transferase-antibiotic complex; HET: TOY; 1.80A {Enterococcus casseliflavus} PDB: 3sg9_A* 3n4v_A 3n4t_A 3n4u_A 3r81_A* 3r80_A* 3r7z_A* 3r82_A* 3vcq_A* 4dbx_A 4de4_A* 4dfb_A* 4dfu_A* 4dt9_A* 4dt8_A* 4dtb_A* 3sgc_A 4dta_A* 3lzh_A
Probab=98.79 E-value=2.4e-09 Score=109.49 Aligned_cols=188 Identities=16% Similarity=0.156 Sum_probs=121.8
Q ss_pred cccccccccEEEEEEEecCCCeEEEEEechhhHHHHHHHHHHHHHHHhcC-CCc--eeeEeeeeecCC---eeEEEEEcc
Q 005040 432 CNLLGTGGFGSVYKGTLSDGTNVAIKIFNLQLERAFRSFDSECEILRNVR-HRN--LLKILGSCSNLD---FKALVLEFM 505 (717)
Q Consensus 432 ~~~lg~G~~g~V~~~~~~~~~~vavK~~~~~~~~~~~~~~~e~~~l~~l~-hpn--iv~~~~~~~~~~---~~~lv~e~~ 505 (717)
++.++.|....||+.. ..+++|+.... .....+.+|.++++.+. +.. +.+.+......+ ..|+|||++
T Consensus 25 i~~~~~G~~n~v~~v~----~~~vlR~~~~~--~~~~~~~~E~~~l~~l~~~~~v~vP~~~~~~~~~~~~~~~~~vm~~i 98 (304)
T 3sg8_A 25 IEISGEGNDCIAYEIN----RDFIFKFPKHS--RGSTNLFNEVNILKRIHNKLPLPIPEVVFTGMPSETYQMSFAGFTKI 98 (304)
T ss_dssp CCEEEECSSEEEEEST----TSEEEEEESSH--HHHHHHHHHHHHHHHHTTSSSSCCCCEEEECCCCSSCSCSCEEEECC
T ss_pred eEecCCCCcceEEEEC----CEEEEEecCCc--chHHHHHHHHHHHHHHHhcCCCCCCceEeecCCCCCCCcceEEEccc
Confidence 4568999999999863 56889986543 33467888999999883 322 344555443332 348999999
Q ss_pred CCCCHHHHHhhCCCCCCHHHHHHHHHHHHHHHHHHhhcC-----------------------------------------
Q 005040 506 PNGSLEKWLYSHNYFLDILQRLNIMIDVGSALEYLHHCH----------------------------------------- 544 (717)
Q Consensus 506 ~~g~L~~~l~~~~~~~~~~~~~~i~~~i~~~l~~LH~~~----------------------------------------- 544 (717)
+|.++.+.... .++..++..++.++++.+..||...
T Consensus 99 ~G~~l~~~~~~---~l~~~~~~~~~~~l~~~la~LH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 175 (304)
T 3sg8_A 99 KGVPLTPLLLN---NLPKQSQNQAAKDLARFLSELHSINISGFKSNLVLDFREKINEDNKKIKKLLSRELKGPQMKKVDD 175 (304)
T ss_dssp CCEECCHHHHH---TSCHHHHHHHHHHHHHHHHHHHHSCCTTSCGGGBCCHHHHHHHHHHHHHHHHTTTSCHHHHHHHHH
T ss_pred CCeECCccccc---cCCHHHHHHHHHHHHHHHHHHHcCCCCCCCccchhhHHHHHHHHHHHHHHHhcccCCcccHHHHHH
Confidence 99888653332 2667777888888888888888521
Q ss_pred -------------CCCCeEecCCCCCCeeeCC--CCcEEEeeeccccccCCCCCceeeecc---ccC-------ccc--c
Q 005040 545 -------------SSAPIIHCDLKPTNILLDE--NMVAHVSDFGISKLLGEGEDSVIQTMT---MAT-------IGY--M 597 (717)
Q Consensus 545 -------------~~~~ivH~dlk~~Nill~~--~~~~kl~Dfgl~~~~~~~~~~~~~~~~---~~t-------~~y--~ 597 (717)
....++|+|+++.||+++. +..+.++||+.+..-....+-...... .+. .+| .
T Consensus 176 ~~~~~l~~~~~~~~~~~~~HgD~~~~N~l~~~~~~~~~~~iD~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~~l~~Y~~~ 255 (304)
T 3sg8_A 176 FYRDILENEIYFKYYPCLIHNDFSSDHILFDTEKNTICGIIDFGDAAISDPDNDFISLMEDDEEYGMEFVSKILNHYKHK 255 (304)
T ss_dssp HHHHHHTCGGGTCCCCEEECSCCCGGGEEEETTTTEEEEECCCTTCEEECTTHHHHTTCCTTTSCCHHHHHHHHHHHTCS
T ss_pred HHHHHHhccccccCCceeEeCCCCcccEEEeCCCCCEEEEEeCCCCccCChHHHHHHHHhhccccCHHHHHHHHHHcCCC
Confidence 1135899999999999998 556889999988754221110000000 000 001 1
Q ss_pred C-CCccCCCCcCcccchhhHHHHHHHHHhCCCCC
Q 005040 598 A-PEYGSEGIVSTKCDVYSYGVLLMETFTEKKPT 630 (717)
Q Consensus 598 a-PE~~~~~~~~~~~Dvws~G~il~el~tg~~p~ 630 (717)
. |+... ......+.|++|.++|.+.+|+.+|
T Consensus 256 ~~~~~~~--r~~~~~~~~~l~~~~~~~~~g~~~~ 287 (304)
T 3sg8_A 256 DIPTVLE--KYRMKEKYWSFEKIIYGKEYGYMDW 287 (304)
T ss_dssp CHHHHHH--HHHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred CcHHHHH--HHHHHHHHHHHHHHHHHHHcCCHHH
Confidence 1 11111 1112368999999999999998875
No 414
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=98.69 E-value=1.3e-09 Score=102.25 Aligned_cols=87 Identities=15% Similarity=0.105 Sum_probs=43.5
Q ss_pred CCCCcEEEccCCCCccc----CCccccccCCCCEEeccCCccccc----CCccccCCCCCCEEec--cCCcCcccC----
Q 005040 116 LRGLIVLSLGFNDLNGT----IPTSIGTLQQLQGFYVPENNLQGY----VPHDLCHLERLNILNL--SGNKLSGAI---- 181 (717)
Q Consensus 116 l~~L~~L~L~~n~l~~~----~~~~~~~l~~L~~L~l~~n~i~~~----~~~~~~~l~~L~~L~L--~~n~l~~~~---- 181 (717)
.++|++|+|++|.|... +...+...++|++|+|++|.|+.. +...+...++|++|+| ++|.|+...
T Consensus 64 ~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~~~N~i~~~g~~~l 143 (185)
T 1io0_A 64 NTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGILALVEALQSNTSLIELRIDNQSQPLGNNVEMEI 143 (185)
T ss_dssp CCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHHHHHHHHGGGGCSSCCEEECCCCSSCCCHHHHHHH
T ss_pred CCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCCHHHHHHHHHHHHhCCCceEEEecCCCCCCCHHHHHHH
Confidence 34455555555555422 122233344555555555555533 1233444556666666 556665332
Q ss_pred CccccCCCCCCeEEecCcccc
Q 005040 182 PQCLASLTSLRSLYLQSNKLS 202 (717)
Q Consensus 182 ~~~~~~l~~L~~L~L~~N~l~ 202 (717)
...+...++|++|+|++|.+.
T Consensus 144 ~~~L~~n~~L~~L~L~~n~i~ 164 (185)
T 1io0_A 144 ANMLEKNTTLLKFGYHFTQQG 164 (185)
T ss_dssp HHHHHHCSSCCEEECCCSSHH
T ss_pred HHHHHhCCCcCEEeccCCCCC
Confidence 223444566667777666665
No 415
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=98.65 E-value=3.8e-09 Score=99.07 Aligned_cols=92 Identities=24% Similarity=0.173 Sum_probs=47.2
Q ss_pred ccccCCCCCcEEEccCC-CCccc----CCccccccCCCCEEeccCCcccccCC----ccccCCCCCCEEeccCCcCcccC
Q 005040 111 KEIGNLRGLIVLSLGFN-DLNGT----IPTSIGTLQQLQGFYVPENNLQGYVP----HDLCHLERLNILNLSGNKLSGAI 181 (717)
Q Consensus 111 ~~~~~l~~L~~L~L~~n-~l~~~----~~~~~~~l~~L~~L~l~~n~i~~~~~----~~~~~l~~L~~L~L~~n~l~~~~ 181 (717)
..+...++|++|+|++| .|... +...+...++|++|+|++|.|..... ..+...++|++|+|++|.|++..
T Consensus 30 ~~l~~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~~~g 109 (185)
T 1io0_A 30 RIQNNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSG 109 (185)
T ss_dssp HHHTTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHH
T ss_pred HHHhcCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCCHHH
Confidence 34556677777777777 66532 22334445566666666666654322 22333355555555555555321
Q ss_pred ----CccccCCCCCCeEEe--cCcccc
Q 005040 182 ----PQCLASLTSLRSLYL--QSNKLS 202 (717)
Q Consensus 182 ----~~~~~~l~~L~~L~L--~~N~l~ 202 (717)
...+...++|++|+| ++|.|+
T Consensus 110 ~~~l~~~L~~n~~L~~L~L~~~~N~i~ 136 (185)
T 1io0_A 110 ILALVEALQSNTSLIELRIDNQSQPLG 136 (185)
T ss_dssp HHHHHHGGGGCSSCCEEECCCCSSCCC
T ss_pred HHHHHHHHHhCCCceEEEecCCCCCCC
Confidence 223334444555555 445444
No 416
>3r70_A Aminoglycoside phosphotransferase; structural genomics, center for structural genomics of infec diseases, csgid; HET: MSE ADP PE3; 1.80A {Escherichia coli} PDB: 3r6z_A* 3uzr_A* 4dca_A* 3hav_A* 3ham_A*
Probab=98.56 E-value=5.1e-07 Score=92.72 Aligned_cols=137 Identities=17% Similarity=0.226 Sum_probs=101.2
Q ss_pred cCCccccccccccEEEEEEEecCCCeEEEEEechhhHHHHHHHHHHHHHHHhcCC----CceeeEeeeeecCCeeEEEEE
Q 005040 428 EFNECNLLGTGGFGSVYKGTLSDGTNVAIKIFNLQLERAFRSFDSECEILRNVRH----RNLLKILGSCSNLDFKALVLE 503 (717)
Q Consensus 428 ~~~~~~~lg~G~~g~V~~~~~~~~~~vavK~~~~~~~~~~~~~~~e~~~l~~l~h----pniv~~~~~~~~~~~~~lv~e 503 (717)
....++.++.|....||+. ++.+++|+..... ....+.+|.++++.+.+ ..+.+++++ +..++|||
T Consensus 38 ~i~~v~~l~~G~~n~vy~v----g~~~vlR~~~~~~--~~~~~~~E~~~L~~L~~~~~~~~vP~v~~~----~~~~lvme 107 (320)
T 3r70_A 38 KINELRYLSSGDDSDTFLC----NEQYVVKVPKRDS--VRISQKRELELYRFLENCKLSYQIPAVVYQ----SDRFNIMK 107 (320)
T ss_dssp CCSCEEEEEECSSEEEEEE----TTTEEEEEESSHH--HHHHHHHHHHHHHHHTTSCCSSBCCCEEEE----CSSCEEEE
T ss_pred ceEEEEeCCCCCCceEEEE----CCEEEEEeCCcHH--HHHHHHHHHHHHHHHHhcCCCCCcceEEec----CCcEEEEe
Confidence 5566778999999999998 6778899875432 22457889999998865 223445544 45689999
Q ss_pred ccCCCCHHHHHhhCCCCCCHHHHHHHHHHHHHHHHHHhhcCCC-------------------------------------
Q 005040 504 FMPNGSLEKWLYSHNYFLDILQRLNIMIDVGSALEYLHHCHSS------------------------------------- 546 (717)
Q Consensus 504 ~~~~g~L~~~l~~~~~~~~~~~~~~i~~~i~~~l~~LH~~~~~------------------------------------- 546 (717)
|++|.++...... .++..+...++.++++.+..||.....
T Consensus 108 ~i~G~~l~~~~~~---~l~~~~~~~~~~~l~~~La~LH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 184 (320)
T 3r70_A 108 YIKGERITYEQYH---KLSEKEKDALAYDEATFLKELHSIEIDCSVSLFSDALVNKKDKFLQDKKLLISILEKEQLLTDE 184 (320)
T ss_dssp CCCCBCCCHHHHT---TSCHHHHHHHHHHHHHHHHHHHHSCCCTTSHHHHTTBCCHHHHHHHHHHHHHHHHHHTTCCCHH
T ss_pred ecCCccccccccc---cCCHHHHHHHHHHHHHHHHHHhCCCcccCCCccccccccchHHHHHHHHHHHHHHhhccccccc
Confidence 9999888643321 256667777888888888888854321
Q ss_pred ----------------------CCeEecCCCCCCeeeCCCCcEEEeeeccccc
Q 005040 547 ----------------------APIIHCDLKPTNILLDENMVAHVSDFGISKL 577 (717)
Q Consensus 547 ----------------------~~ivH~dlk~~Nill~~~~~~kl~Dfgl~~~ 577 (717)
..++|+|+++.||+++.+..+.++||+.+..
T Consensus 185 ~~~~~~~~~~~~l~~~~~~~~~~~~~H~D~~~~N~l~~~~~~~~~iD~~~~~~ 237 (320)
T 3r70_A 185 MLEHIETIYENILSNAVLFKYTPCLVHNDFSANNMIFRNNRLFGVIDFGDFNV 237 (320)
T ss_dssp HHHHHHHHHHHHHTCGGGTCCCCEEECSCCSGGGEEEETTEEEEECCCTTCEE
T ss_pred chHHHHHHHHHHHhccccccCCceeeECCCCCCcEEEECCceEEEECCccccc
Confidence 2359999999999999976679999998764
No 417
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=98.45 E-value=1.9e-08 Score=99.01 Aligned_cols=78 Identities=26% Similarity=0.402 Sum_probs=34.7
Q ss_pred CCCCCeEEccCCCCCCC--CcccccCCcccccccccCccccCCCCccccccC--ccceEeccCCCCCCCCc-------cc
Q 005040 236 LNVLIDLDLSRNQLSSD--IPSTIGTLKNLETLSLAGNQFQGPIPESVGNLI--SLESLDFSNNNLSGKIP-------KS 304 (717)
Q Consensus 236 l~~L~~L~l~~N~l~~~--~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~--~L~~L~L~~N~~~~~~~-------~~ 304 (717)
+++|+.|+|++|.|++. ++..+..+++|+.|+|++|+|++. ..+..+. +|++|+|++|++.+..| ..
T Consensus 169 l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~--~~l~~l~~l~L~~L~L~~Npl~~~~~~~~~y~~~i 246 (267)
T 3rw6_A 169 IPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSE--RELDKIKGLKLEELWLDGNSLCDTFRDQSTYISAI 246 (267)
T ss_dssp CTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSG--GGGGGGTTSCCSEEECTTSTTGGGCSSHHHHHHHH
T ss_pred CCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCc--hhhhhcccCCcceEEccCCcCccccCcchhHHHHH
Confidence 44444444444444431 123334444555555555554432 1122222 55555555555554333 12
Q ss_pred ccccccccEEE
Q 005040 305 LEALSHLKQFN 315 (717)
Q Consensus 305 ~~~l~~L~~L~ 315 (717)
+..+|+|+.||
T Consensus 247 l~~~P~L~~LD 257 (267)
T 3rw6_A 247 RERFPKLLRLD 257 (267)
T ss_dssp HHHCTTCCEES
T ss_pred HHHCcccCeEC
Confidence 44555555443
No 418
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=98.44 E-value=3.3e-08 Score=97.31 Aligned_cols=79 Identities=27% Similarity=0.322 Sum_probs=41.2
Q ss_pred CCCCCCeEEecCccccC--CCChhhhcccCCCeEEccCCcCcccCCccccCCC--CCCeEEccCCCCCCCCcc-------
Q 005040 187 SLTSLRSLYLQSNKLSS--SLPSSLWSLEYILRINLSSNSLKGTLPSNIQKLN--VLIDLDLSRNQLSSDIPS------- 255 (717)
Q Consensus 187 ~l~~L~~L~L~~N~l~~--~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~--~L~~L~l~~N~l~~~~~~------- 255 (717)
++++|+.|+|++|+|++ .++..+..+++|+.|+|++|+|++. ..+..+. +|++|+|++|.+.+..|.
T Consensus 168 ~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~--~~l~~l~~l~L~~L~L~~Npl~~~~~~~~~y~~~ 245 (267)
T 3rw6_A 168 NIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSE--RELDKIKGLKLEELWLDGNSLCDTFRDQSTYISA 245 (267)
T ss_dssp HCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSG--GGGGGGTTSCCSEEECTTSTTGGGCSSHHHHHHH
T ss_pred hCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCc--hhhhhcccCCcceEEccCCcCccccCcchhHHHH
Confidence 44555555555555554 2234445555666666666665543 2222222 566666666666543331
Q ss_pred cccCCccccccc
Q 005040 256 TIGTLKNLETLS 267 (717)
Q Consensus 256 ~~~~l~~L~~L~ 267 (717)
.+..+++|+.||
T Consensus 246 il~~~P~L~~LD 257 (267)
T 3rw6_A 246 IRERFPKLLRLD 257 (267)
T ss_dssp HHHHCTTCCEES
T ss_pred HHHHCcccCeEC
Confidence 245566666654
No 419
>3tdw_A Gentamicin resistance protein; kinase, phosphoryl transfer, antibiotic resistance, transfer; HET: GDP; 1.70A {Enterococcus gallinarum} PDB: 3tdv_A*
Probab=98.36 E-value=3.3e-06 Score=85.94 Aligned_cols=137 Identities=14% Similarity=0.097 Sum_probs=94.1
Q ss_pred cccccccccEEEEEEEecCCCeEEEEEechhhHHHHHHHHHHHHHHHhcCCC---ceeeEeeeee-cCCeeEEEEEccCC
Q 005040 432 CNLLGTGGFGSVYKGTLSDGTNVAIKIFNLQLERAFRSFDSECEILRNVRHR---NLLKILGSCS-NLDFKALVLEFMPN 507 (717)
Q Consensus 432 ~~~lg~G~~g~V~~~~~~~~~~vavK~~~~~~~~~~~~~~~e~~~l~~l~hp---niv~~~~~~~-~~~~~~lv~e~~~~ 507 (717)
++.++.|....||+. ++.+++|+.... .....+.+|.++++.+.+. .+.+.+.+.. ..+..++||||++|
T Consensus 24 v~~l~~G~~n~v~~v----g~~~VlR~~~~~--~~~~~~~~E~~~L~~L~~~~~v~VP~~~~~~~~~~g~~~~v~e~i~G 97 (306)
T 3tdw_A 24 VESLGEGFRNYAILV----NGDWVFRFPKSQ--QGADELNKEIQLLPLLVGCVKVNIPQYVYIGKRSDGNPFVGYRKVQG 97 (306)
T ss_dssp EEEEEECSSEEEEEE----TTTEEEEEESSH--HHHHHHHHHHHHHHHHTTTCSSBCCCEEEEEECTTSCEEEEEECCCS
T ss_pred eeecCCCcceeEEEE----CCEEEEEecCCc--hHHHHHHHHHHHHHHHHhcCCCCCCCeEeecccCCCceEEEEeccCC
Confidence 456788888899987 567889985422 3346788899999999642 3556666653 45567899999999
Q ss_pred CCHHHHHhhCCCCCCHHHHHHHHHHHHHHHHHHhhcC-------------------------------------------
Q 005040 508 GSLEKWLYSHNYFLDILQRLNIMIDVGSALEYLHHCH------------------------------------------- 544 (717)
Q Consensus 508 g~L~~~l~~~~~~~~~~~~~~i~~~i~~~l~~LH~~~------------------------------------------- 544 (717)
.++.+..-. .++......++.++++.|..||...
T Consensus 98 ~~l~~~~~~---~l~~~~~~~~~~~lg~~La~LH~~~~~~~~~~g~p~~~w~~~~~~~~~~~~~~~~~~l~~~~~~~l~~ 174 (306)
T 3tdw_A 98 QILGEDGMA---VLPDDAKDRLALQLAEFMNELSAFPVETAISAGVPVTNLKNKILLLSEAVEDQVFPLLDESLRDYLTL 174 (306)
T ss_dssp EECHHHHHT---TSCHHHHHHHHHHHHHHHHHHHHSCHHHHHHTTCCBCCHHHHHHHHHHHHHHHTGGGSCHHHHHHHHH
T ss_pred eECchhhhh---hCCHHHHHHHHHHHHHHHHHHhcCCcccccccCCChHHHHHHHHHHHHHHHHhcccccchhhHHHHHH
Confidence 887653211 1344455555555555555555421
Q ss_pred -------------CCCCeEecCCCCCCeeeCC---CCc-EEEeeeccccc
Q 005040 545 -------------SSAPIIHCDLKPTNILLDE---NMV-AHVSDFGISKL 577 (717)
Q Consensus 545 -------------~~~~ivH~dlk~~Nill~~---~~~-~kl~Dfgl~~~ 577 (717)
....++|+|+++.||+++. ++. +.|+||+.+..
T Consensus 175 ~~~~~l~~~~~~~~~~~~~HgD~~~~N~l~~~~~~~~~~~~~iD~~~a~~ 224 (306)
T 3tdw_A 175 RFQSYMTHPVYTRYTPRLIHGDLSPDHFLTNLNSRQTPLTGIIDFGDAAI 224 (306)
T ss_dssp HHHHHHHCHHHHCCCCEEECSCCSGGGEEECTTCSSCCEEEECCCTTCEE
T ss_pred HHHHHHhCcccccCCCeeEeCCCCcccEEEecCCCCCceEEEEehhhcCC
Confidence 1335799999999999997 455 58999997653
No 420
>4gkh_A Aminoglycoside 3'-phosphotransferase APHA1-IAB; pyrazolopyrimidine, 1-Na-PP1, bumped kinase inhibitor, BKI, kinase inhibitor; HET: KAN 0J9; 1.86A {Acinetobacter baumannii} PDB: 4feu_A* 4few_A* 4fex_A* 4fev_A* 4gki_A* 4ej7_A* 3r78_A*
Probab=98.35 E-value=2.7e-06 Score=85.05 Aligned_cols=136 Identities=18% Similarity=0.114 Sum_probs=98.1
Q ss_pred cccccccE-EEEEEEec-CCCeEEEEEechhhHHHHHHHHHHHHHHHhcC-CCceeeEeeeeecCCeeEEEEEccCCCCH
Q 005040 434 LLGTGGFG-SVYKGTLS-DGTNVAIKIFNLQLERAFRSFDSECEILRNVR-HRNLLKILGSCSNLDFKALVLEFMPNGSL 510 (717)
Q Consensus 434 ~lg~G~~g-~V~~~~~~-~~~~vavK~~~~~~~~~~~~~~~e~~~l~~l~-hpniv~~~~~~~~~~~~~lv~e~~~~g~L 510 (717)
.+..|..| .||+.... ++..+++|+-... ....+.+|...|+.+. +-.+.++++++.+.+..++|||+++|.++
T Consensus 31 ~~~~G~S~~~v~rl~~~~~~~~~~lk~~~~~---~~~~~~~E~~~l~~l~~~vPVP~v~~~~~~~~~~~lvme~l~G~~~ 107 (272)
T 4gkh_A 31 RDNVGQSGATIYRLYGKPNAPELFLKHGKGS---VANDVTDEMVRLNWLTAFMPLPTIKHFIRTPDDAWLLTTAIPGKTA 107 (272)
T ss_dssp EEECSSSSCEEEEEECCTTCCCEEEEEEETH---HHHHHHHHHHHHHHHTTTSCCCCEEEEEEETTEEEEEEECCCSEEH
T ss_pred EccCCCcCCeEEEEEecCCCeEEEEEECCCC---CHhHHHHHHHHHHHhccCCCcCeEEEEEEECCeEEEEEEeeCCccc
Confidence 45556555 68988765 5678999987644 2356778999999884 33467888888888999999999999888
Q ss_pred HHHHhhCCCCCCHHHHHHHHHHHHHHHHHHhhcC----------------------------------------------
Q 005040 511 EKWLYSHNYFLDILQRLNIMIDVGSALEYLHHCH---------------------------------------------- 544 (717)
Q Consensus 511 ~~~l~~~~~~~~~~~~~~i~~~i~~~l~~LH~~~---------------------------------------------- 544 (717)
.+...... .....+..+++..|..||...
T Consensus 108 ~~~~~~~~-----~~~~~~~~~l~~~L~~Lh~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 182 (272)
T 4gkh_A 108 FQVLEEYP-----DSGENIVDALAVFLRRLHSIPVCNCPFNSDRVFRLAQAQSRMNNGLVDASDFDDERNGWPVEQVWKE 182 (272)
T ss_dssp HHHHHHCG-----GGHHHHHHHHHHHHHHHHTSCGGGCCBBCCHHHHHHHHHHHHHTTCCCGGGCCGGGTTCCHHHHHHH
T ss_pred cccccCCH-----HHHHHHHHHHHHHHHHhcCCCcccCCcCcccccchhhHHHHHHHhhhhhhhccccccchHHHHHHHH
Confidence 77654321 123345666777777777421
Q ss_pred --------CCCCeEecCCCCCCeeeCCCCcEEEeeeccccc
Q 005040 545 --------SSAPIIHCDLKPTNILLDENMVAHVSDFGISKL 577 (717)
Q Consensus 545 --------~~~~ivH~dlk~~Nill~~~~~~kl~Dfgl~~~ 577 (717)
....++|+|+.+.||+++.++.+-|+||+.+..
T Consensus 183 l~~~~~~~~~~~l~HGDl~~~Nil~~~~~~~~viDwe~a~~ 223 (272)
T 4gkh_A 183 MHKLLPFSPDSVVTHGDFSLDNLIFDEGKLIGCIDVGRVGI 223 (272)
T ss_dssp HHTTCCCCCCEEEECSCCCTTSEEEETTEEEEECCCTTCEE
T ss_pred HHhcccccCCcEEEcCCCCCCeEEEECCeEEEEEECccccc
Confidence 011278999999999999887778999997653
No 421
>3d1u_A Putative fructosamine-3-kinase; YP_290396.1, structural genomics, joint center for structural genomics, JCSG, protein structure initiative; 1.85A {Thermobifida fusca} PDB: 3f7w_A
Probab=98.31 E-value=2.1e-06 Score=86.36 Aligned_cols=77 Identities=17% Similarity=0.136 Sum_probs=59.9
Q ss_pred CccccccccccEEEEEEEecCCCeEEEEEechhhHHHHHHHHHHHHHHHhcCCC---ceeeEeeeeecCCeeEEEEEccC
Q 005040 430 NECNLLGTGGFGSVYKGTLSDGTNVAIKIFNLQLERAFRSFDSECEILRNVRHR---NLLKILGSCSNLDFKALVLEFMP 506 (717)
Q Consensus 430 ~~~~~lg~G~~g~V~~~~~~~~~~vavK~~~~~~~~~~~~~~~e~~~l~~l~hp---niv~~~~~~~~~~~~~lv~e~~~ 506 (717)
...+.|+.|.++.||++...+|+.++||+...........+..|++.|+.+++. .+.+++++. ..++||||++
T Consensus 18 ~~~~~l~gG~~n~vy~v~~~dG~~~vvK~~~~~~~~~~~~~~~E~~~L~~L~~~~~v~vP~v~~~~----~~~lvme~l~ 93 (288)
T 3d1u_A 18 AAVAERGHSHRWHLYRVELADGTPLFVKALPDDAPALDGLFRAEALGLDWLGRSFGSPVPQVAGWD----DRTLAMEWVD 93 (288)
T ss_dssp EEEEEEEEETTEEEEEEEETTSCEEEEEECCTTCCCCTTHHHHHHHHHHHHTCSTTCCSCCEEEEE----TTEEEEECCC
T ss_pred cceeeeCCcchhheEEEEeCCCCeEEEEecCCCCcchhHHHHHHHHHHHHHHhcCCCCcCeEEEec----CcEEEEEecc
Confidence 345689999999999999888999999996543222235678899999999765 577777763 3599999999
Q ss_pred CCCH
Q 005040 507 NGSL 510 (717)
Q Consensus 507 ~g~L 510 (717)
++++
T Consensus 94 g~~~ 97 (288)
T 3d1u_A 94 ERPP 97 (288)
T ss_dssp CCCC
T ss_pred cCCC
Confidence 8864
No 422
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=98.21 E-value=5e-07 Score=82.29 Aligned_cols=84 Identities=10% Similarity=0.057 Sum_probs=45.3
Q ss_pred CCCcEEEccCCCCcccCCccccccCCCCEEeccCCc-ccccCCccccCC----CCCCEEeccCCc-CcccCCccccCCCC
Q 005040 117 RGLIVLSLGFNDLNGTIPTSIGTLQQLQGFYVPENN-LQGYVPHDLCHL----ERLNILNLSGNK-LSGAIPQCLASLTS 190 (717)
Q Consensus 117 ~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~-i~~~~~~~~~~l----~~L~~L~L~~n~-l~~~~~~~~~~l~~ 190 (717)
.+|+.|||+++.|+......+.++++|++|+|++|. |++..-..++.+ ++|++|+|++|. |++..-..++.+++
T Consensus 61 ~~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~L~~~~~ 140 (176)
T 3e4g_A 61 YKIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGIIALHHFRN 140 (176)
T ss_dssp CCEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHHHHGGGCTT
T ss_pred ceEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHHHHHhcCCC
Confidence 356666666666655544555556666666666653 554333344443 246666666653 55433344555556
Q ss_pred CCeEEecCcc
Q 005040 191 LRSLYLQSNK 200 (717)
Q Consensus 191 L~~L~L~~N~ 200 (717)
|++|+|++|.
T Consensus 141 L~~L~L~~c~ 150 (176)
T 3e4g_A 141 LKYLFLSDLP 150 (176)
T ss_dssp CCEEEEESCT
T ss_pred CCEEECCCCC
Confidence 6666665553
No 423
>3ovc_A Hygromycin-B 4-O-kinase; aminoglycoside phosphotransferase, structural genomics, PSI- protein structure initiative; HET: HY0 PE4; 1.95A {Escherichia coli} PDB: 3tyk_A*
Probab=98.21 E-value=4e-06 Score=87.41 Aligned_cols=142 Identities=11% Similarity=0.155 Sum_probs=89.5
Q ss_pred ccccccccccEEEEEEEecCCCeEEEEEechhhHHHHHHHHHHHHHHHhcCCCc--eeeEeeeeecC-CeeEEEEEccCC
Q 005040 431 ECNLLGTGGFGSVYKGTLSDGTNVAIKIFNLQLERAFRSFDSECEILRNVRHRN--LLKILGSCSNL-DFKALVLEFMPN 507 (717)
Q Consensus 431 ~~~~lg~G~~g~V~~~~~~~~~~vavK~~~~~~~~~~~~~~~e~~~l~~l~hpn--iv~~~~~~~~~-~~~~lv~e~~~~ 507 (717)
..+.++.|....+|+... +++.+++|+.... ..+..|..+++.+.... +.++++++.+. +..|+||||++|
T Consensus 45 ~i~~l~gG~~n~~y~v~~-~g~~~vlK~~~~~-----~~~~~E~~~l~~L~~~gvpvP~vl~~~~~~~g~~~lv~e~l~G 118 (362)
T 3ovc_A 45 DLMQLSEGEESRAFSFDV-GGRGYVLRVNSCA-----DGFYKDRYVYRHFASAALPIPEVLDIGEFSESLTYCISRRAQG 118 (362)
T ss_dssp EEEEEEECSSEEEEEEEE-TTEEEEEEEESCC-----HHHHHHHHHHHHHCCSSSCCCCEEEEEESSSSCEEEEEECCCS
T ss_pred eEEECCCCCcceEEEEEE-CCcEEEEEeCCch-----hhHHHHHHHHHHHHhcCCCCceEEEeccCCCCCeEEEEEecCC
Confidence 456788899999999886 5788999987543 24777889999886433 45666665554 567999999987
Q ss_pred CCHHH---------------HH---hhCC--C--C------------CCHHHH---------------------HHHHHH
Q 005040 508 GSLEK---------------WL---YSHN--Y--F------------LDILQR---------------------LNIMID 532 (717)
Q Consensus 508 g~L~~---------------~l---~~~~--~--~------------~~~~~~---------------------~~i~~~ 532 (717)
.++.+ .+ +... . . -.|... ......
T Consensus 119 ~~l~~l~~~~~~~~~~~lg~~La~LH~~~~~~~~gl~~~~~~~~~~~~~w~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 198 (362)
T 3ovc_A 119 VTLQDLPETELPAVLQPVAEAMDAIAAADLSQTSGFGPFGPQGIGQYTTWRDFICAIADPHVYHWQTVMDDTVSASVAQA 198 (362)
T ss_dssp EETTTSCGGGSGGGHHHHHHHHHHHHHCCCTTCBCEEEECTTSBEEESSHHHHHHGGGCTTTCCHHHHCCTTTHHHHHHH
T ss_pred CCcccCCHHHHHHHHHHHHHHHHHHhcCCCccccCccCCCCCCCCccccHHHHHHHHHHHHHHHHHHHHhhcccccchHH
Confidence 55431 11 1110 0 0 001111 011111
Q ss_pred HHHHHHHHhhcCCCCCeEecCCCCCCeeeCCCCcEEEeeecccccc
Q 005040 533 VGSALEYLHHCHSSAPIIHCDLKPTNILLDENMVAHVSDFGISKLL 578 (717)
Q Consensus 533 i~~~l~~LH~~~~~~~ivH~dlk~~Nill~~~~~~kl~Dfgl~~~~ 578 (717)
+.....++........++|+|+.+.||+++.++.+.|+||+.+..-
T Consensus 199 ~~~l~~~l~~lp~~~~l~HgDl~~~Nil~~~~~~~~viD~~~~~~g 244 (362)
T 3ovc_A 199 LDELMLWAEDCPEVRHLVHADFGSNNVLTDNGRITAVIDWSEAMFG 244 (362)
T ss_dssp HHHHHHHGGGCCCCCEEECSSCSSTTEEEETTEEEEECCCTTCEEE
T ss_pred HHHHHHHHhhCCCCcEEEeCCCCCCeEEEeCCCEEEEECCcccccC
Confidence 2222233332221246899999999999988778889999988653
No 424
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=98.11 E-value=8e-07 Score=80.92 Aligned_cols=83 Identities=12% Similarity=0.105 Sum_probs=36.5
Q ss_pred CCCEEeccCCcCcccCCccccCCCCCCeEEecCcc-ccCCCChhhhcc----cCCCeEEccCCc-CcccCCccccCCCCC
Q 005040 166 RLNILNLSGNKLSGAIPQCLASLTSLRSLYLQSNK-LSSSLPSSLWSL----EYILRINLSSNS-LKGTLPSNIQKLNVL 239 (717)
Q Consensus 166 ~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~-l~~~~~~~~~~l----~~L~~L~l~~N~-l~~~~~~~~~~l~~L 239 (717)
.|+.|||++|.|+...-..+.++++|++|+|++|. |++..-..+..+ ++|++|+|++|. |+...-..+..+++|
T Consensus 62 ~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~L~~~~~L 141 (176)
T 3e4g_A 62 KIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGIIALHHFRNL 141 (176)
T ss_dssp CEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHHHHGGGCTTC
T ss_pred eEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHHHHHhcCCCC
Confidence 34444444444443333334444444444444442 332222223332 245555555543 443333344455555
Q ss_pred CeEEccCCC
Q 005040 240 IDLDLSRNQ 248 (717)
Q Consensus 240 ~~L~l~~N~ 248 (717)
+.|+|+++.
T Consensus 142 ~~L~L~~c~ 150 (176)
T 3e4g_A 142 KYLFLSDLP 150 (176)
T ss_dssp CEEEEESCT
T ss_pred CEEECCCCC
Confidence 555555553
No 425
>3ats_A Putative uncharacterized protein; hypothetical protein, putative aminoglycoside phosphortransf transferase; 1.67A {Mycobacterium tuberculosis} PDB: 3att_A*
Probab=98.03 E-value=5.2e-06 Score=86.61 Aligned_cols=80 Identities=9% Similarity=-0.009 Sum_probs=55.2
Q ss_pred cccc-cccccEEEEEEEec-------CCCeEEEEEechhhH--H-HHHHHHHHHHHHHhcC-C--CceeeEeeeeecC--
Q 005040 432 CNLL-GTGGFGSVYKGTLS-------DGTNVAIKIFNLQLE--R-AFRSFDSECEILRNVR-H--RNLLKILGSCSNL-- 495 (717)
Q Consensus 432 ~~~l-g~G~~g~V~~~~~~-------~~~~vavK~~~~~~~--~-~~~~~~~e~~~l~~l~-h--pniv~~~~~~~~~-- 495 (717)
.+.| +.|....+|+.... +++.+++|+...... . ....+.+|.++++.+. + -.+.++++++.+.
T Consensus 25 ~~~l~~~G~~n~~y~v~~~~~~~~~~~~~~~vlR~~~~~~~~~~~~~~~~~~E~~~l~~L~~~~~vpvP~v~~~~~~~~~ 104 (357)
T 3ats_A 25 ESGVDSTGMSSETIILTARWQQDGRSIQQKLVARVAPAAEDVPVFPTYRLDHQFEVIRLVGELTDVPVPRVRWIETTGDV 104 (357)
T ss_dssp EEEECTTSSEEEEEEEEEEEEETTEEEEEEEEEEECCCGGGCCSSSCCCHHHHHHHHHHHHHHCCSCCCCEEEEECSSTT
T ss_pred EEECCCCCccceEEEEEEecccCCCCCCceEEEEeCCCCCccccCchhHHHHHHHHHHHHhhcCCCCCCcEEEEccCCCc
Confidence 3567 88889999998764 267789998754320 0 1245677888888884 3 3567778777654
Q ss_pred -CeeEEEEEccCCCCHH
Q 005040 496 -DFKALVLEFMPNGSLE 511 (717)
Q Consensus 496 -~~~~lv~e~~~~g~L~ 511 (717)
+..++||||++|..+.
T Consensus 105 ~g~~~~v~e~l~G~~l~ 121 (357)
T 3ats_A 105 LGTPFFLMDYVEGVVPP 121 (357)
T ss_dssp TSSCEEEEECCCCBCCC
T ss_pred cCCceEEEEecCCCChh
Confidence 4568999999886543
No 426
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=97.92 E-value=1.9e-06 Score=80.07 Aligned_cols=54 Identities=11% Similarity=0.128 Sum_probs=32.3
Q ss_pred CCCCCCCCEEEcccc-cccCccCCcccccccccccCccCCcEEeccCCCCcccCCcchh
Q 005040 32 FGNLRHLSVLSLMMN-NLTTESSSADQWSFLSSLTNCRNLANLALASNPLGGILPPLIG 89 (717)
Q Consensus 32 ~~~l~~L~~L~L~~n-~l~~~~~~~~~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~ 89 (717)
+.+-+.|++|+|++| +|.+... ..+.+.+...+.|++|+|++|+|+......+.
T Consensus 37 l~~n~~L~~L~L~~nn~igd~ga----~~la~aL~~N~~L~~L~L~~n~igd~ga~alA 91 (197)
T 1pgv_A 37 REDDTDLKEVNINNMKRVSKERI----RSLIEAACNSKHIEKFSLANTAISDSEARGLI 91 (197)
T ss_dssp HTTCSSCCEEECTTCCSSCHHHH----HHHHHHHTTCSCCCEEECTTSCCBHHHHTTHH
T ss_pred HhcCCCccEEECCCCCCCCHHHH----HHHHHHHhhCCCcCEEEccCCCCChHHHHHHH
Confidence 344566777777764 6654321 12345566677777777777777755444443
No 427
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=97.79 E-value=7.7e-06 Score=75.91 Aligned_cols=62 Identities=15% Similarity=0.041 Sum_probs=30.2
Q ss_pred ccCCCCCcEEEccCCCCcccC----CccccccCCCCEEeccCCcccccCCc----cccCCCCCCEEeccC
Q 005040 113 IGNLRGLIVLSLGFNDLNGTI----PTSIGTLQQLQGFYVPENNLQGYVPH----DLCHLERLNILNLSG 174 (717)
Q Consensus 113 ~~~l~~L~~L~L~~n~l~~~~----~~~~~~l~~L~~L~l~~n~i~~~~~~----~~~~l~~L~~L~L~~ 174 (717)
+..-+.|+.|+|++|+|.... ...+..-+.|++|+|++|.|+..... ++..-+.|++|+|++
T Consensus 66 L~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig~~Ga~ala~aL~~N~tL~~L~L~n 135 (197)
T 1pgv_A 66 ACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLARLLRSTLVTQSIVEFKADN 135 (197)
T ss_dssp HTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHHHHHHHTTTTCCCSEEECCC
T ss_pred HhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCCHHHHHHHHHHHhhCCceeEEECCC
Confidence 444456666666666665332 22233445566666666665543222 223334455555544
No 428
>2q83_A YTAA protein; 2635576, structural genomics, joint center for structu genomics, JCSG, protein structure initiative, PSI-2, transf; HET: ADN CIT UNL; 2.50A {Bacillus subtilis}
Probab=97.75 E-value=0.00015 Score=74.86 Aligned_cols=139 Identities=17% Similarity=0.123 Sum_probs=78.6
Q ss_pred ccccccccEEEEEEEecCCCeEEEEEechhhHHHHHHHHHHHHHHHhcC-----CCceeeEe-e--eeecCCeeEEEEEc
Q 005040 433 NLLGTGGFGSVYKGTLSDGTNVAIKIFNLQLERAFRSFDSECEILRNVR-----HRNLLKIL-G--SCSNLDFKALVLEF 504 (717)
Q Consensus 433 ~~lg~G~~g~V~~~~~~~~~~vavK~~~~~~~~~~~~~~~e~~~l~~l~-----hpniv~~~-~--~~~~~~~~~lv~e~ 504 (717)
+.|+.|..+.||+....+| .+++|+..... ..+..|.++++.+. .|.++... | +....+..++||||
T Consensus 38 ~~l~gG~~n~~~~v~~~~~-~~vlk~~~~~~----~~~~~e~~~l~~L~~~g~~vp~~~~~~~g~~~~~~~~~~~~l~~~ 112 (346)
T 2q83_A 38 DVIQGNQMALVWKVHTDSG-AVCLKRIHRPE----KKALFSIFAQDYLAKKGMNVPGILPNKKGSLYSKHGSFLFVVYDW 112 (346)
T ss_dssp EECC----CEEEEEEETTE-EEEEEEECSCH----HHHHHHHHHHHHHHHHTCSSCCBCCCTTSCSCEEETTEEEEEEEC
T ss_pred eeccccccCcEEEEEeCCC-CEEEEecCCCH----HHHHHHHHHHHHHHHcCCCCCceeecCCCCEEEEECCEEEEEEEe
Confidence 4566677889999987655 48899887532 22334555555553 34444311 1 11345677999999
Q ss_pred cCCCCHH--------------HHHhh--CCC-----------CCCHHHH-------------------------------
Q 005040 505 MPNGSLE--------------KWLYS--HNY-----------FLDILQR------------------------------- 526 (717)
Q Consensus 505 ~~~g~L~--------------~~l~~--~~~-----------~~~~~~~------------------------------- 526 (717)
++|..+. ..++. ... ...|...
T Consensus 113 i~G~~~~~~~~~~~~~~g~~La~lH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 192 (346)
T 2q83_A 113 IEGRPFELTVKQDLEFIMKGLADFHTASVGYQPPNGVPIFTKLGRWPNHYTKRCKQMETWKLMAEAEKEDPFSQLYLQEI 192 (346)
T ss_dssp CCCBCCCTTSHHHHHHHHHHHHHHHHHHTTCCCCTTCCCCBCTTCHHHHHHHHHHHHHHHHHHHHHCSSCHHHHHHHHHH
T ss_pred ecCccCCCCCHHHHHHHHHHHHHHHHhCCCCCCCccchhcccccchHHHHHHHHHHHHHHHHHHHhccCCcHHHHHHHHH
Confidence 9986431 11121 100 0123211
Q ss_pred HHHHHHHHHHHHHHhh--------c-CCCCCeEecCCCCCCeeeCCCCcEEEeeecccc
Q 005040 527 LNIMIDVGSALEYLHH--------C-HSSAPIIHCDLKPTNILLDENMVAHVSDFGISK 576 (717)
Q Consensus 527 ~~i~~~i~~~l~~LH~--------~-~~~~~ivH~dlk~~Nill~~~~~~kl~Dfgl~~ 576 (717)
..+...+..++.+|+. . .....++|+|+.+.||+++.++.+.++||+.+.
T Consensus 193 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~HgD~~~~Nil~~~~~~~~lIDfe~a~ 251 (346)
T 2q83_A 193 DGFIEDGLRIKDRLLQSTYVPWTEQLKKSPNLCHQDYGTGNTLLGENEQIWVIDLDTVS 251 (346)
T ss_dssp HHHHHHHHHHHHHHHHTTHHHHHHHHHHSCCEECSSCSTTSEEECGGGCEEECCCTTCE
T ss_pred HHHHHHHHHHHHHHHhchHHHHHHhccccCceecCCCCcccEEEeCCCcEEEEehhhcc
Confidence 0111123345666652 0 014679999999999999888899999999764
No 429
>2olc_A MTR kinase, methylthioribose kinase; kinase ADP-2HO complex, transferase; HET: CPS ADP; 2.00A {Bacillus subtilis} SCOP: d.144.1.6 PDB: 2pu8_A* 2pui_A* 2pul_A* 2pun_A* 2pup_A*
Probab=97.73 E-value=6.4e-05 Score=79.54 Aligned_cols=75 Identities=15% Similarity=0.158 Sum_probs=48.9
Q ss_pred cccccccccEEEEEEEec-CCCeEEEEEechhhH-------HHHHHHHHHHHHHHhcCC--Cc-eeeEeeeeecCCeeEE
Q 005040 432 CNLLGTGGFGSVYKGTLS-DGTNVAIKIFNLQLE-------RAFRSFDSECEILRNVRH--RN-LLKILGSCSNLDFKAL 500 (717)
Q Consensus 432 ~~~lg~G~~g~V~~~~~~-~~~~vavK~~~~~~~-------~~~~~~~~e~~~l~~l~h--pn-iv~~~~~~~~~~~~~l 500 (717)
.+.+|.|..+.||++... +++.++||....... .....+..|.++++.+.. |. +.+++.+ +.+..++
T Consensus 35 ~~~lg~G~~n~vyrv~~~~~~~~~vvK~~~~~~r~~~~~~~~~~~r~~~E~~~L~~l~~~~~~~vP~~~~~--d~~~~~l 112 (397)
T 2olc_A 35 CQEIGDGNLNYVFHIYDQEHDRALIIKQAVPYAKVVGESWPLTIDRARIESSALIRQGEHVPHLVPRVFYS--DTEMAVT 112 (397)
T ss_dssp EEECCSSSSEEEEEEEC----CEEEEEEECCC-------CCCCTTHHHHHHHHHHHHHTTCGGGSCCEEEE--ETTTTEE
T ss_pred EEECCCCceEEEEEEEECCCCcEEEEEecchhhcccCCCCcCcHHHHHHHHHHHHHhhhhCCCCcCeEEEE--cCCccEE
Confidence 467999999999999754 568899997653221 112345678889888742 33 4455544 3345689
Q ss_pred EEEccCCC
Q 005040 501 VLEFMPNG 508 (717)
Q Consensus 501 v~e~~~~g 508 (717)
||||+++.
T Consensus 113 vmE~l~g~ 120 (397)
T 2olc_A 113 VMEDLSHL 120 (397)
T ss_dssp EECCCTTS
T ss_pred EEEeCCCc
Confidence 99999763
No 430
>3f7w_A Putative fructosamine-3-kinase; YP_290396.1, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI-2; 1.85A {Thermobifida fusca YX}
Probab=97.59 E-value=0.00016 Score=72.64 Aligned_cols=78 Identities=18% Similarity=0.156 Sum_probs=56.2
Q ss_pred cCCccccccccccEEEEEEEecCCCeEEEEEechhhHHHHHHHHHHHHHHHhcC-C--CceeeEeeeeecCCeeEEEEEc
Q 005040 428 EFNECNLLGTGGFGSVYKGTLSDGTNVAIKIFNLQLERAFRSFDSECEILRNVR-H--RNLLKILGSCSNLDFKALVLEF 504 (717)
Q Consensus 428 ~~~~~~~lg~G~~g~V~~~~~~~~~~vavK~~~~~~~~~~~~~~~e~~~l~~l~-h--pniv~~~~~~~~~~~~~lv~e~ 504 (717)
+...+..+|.|..+.||+.+..||+.|++|+...........+..|.+.|+.+. . -.+.+.+++. ..++||||
T Consensus 16 ~v~~v~~~g~G~~~~vyrv~l~DG~~~~vK~~~~~~~~~~~~~~~Ea~~L~~L~~~~~vpvP~v~~~~----~~~lv~e~ 91 (288)
T 3f7w_A 16 EVAAVAERGHSHRWHLYRVELADGTPLFVKALPDDAPALDGLFRAEALGLDWLGRSFGSPVPQVAGWD----DRTLAMEW 91 (288)
T ss_dssp CEEEEEEEEEETTEEEEEEEETTSCEEEEEECCTTCCCCTTHHHHHHHHHHHHTCSTTCCSCCEEEEE----TTEEEEEC
T ss_pred CeEEEEecCCCCCeEEEEEEECCCCEEEEEEeCCCCcchhhHHHHHHHHHHHHHhhCCCCcceEEecc----CceEEEEe
Confidence 445567899999999999999999999999876443333345778999999884 2 1344555442 23799999
Q ss_pred cCCCC
Q 005040 505 MPNGS 509 (717)
Q Consensus 505 ~~~g~ 509 (717)
++++.
T Consensus 92 l~~~~ 96 (288)
T 3f7w_A 92 VDERP 96 (288)
T ss_dssp CCCCC
T ss_pred ecccC
Confidence 98764
No 431
>3jr1_A Putative fructosamine-3-kinase; YP_719053.1, structural genomics, joint center for structural genomics, JCSG; HET: MSE UNL; 2.32A {Haemophilus somnus 129PT}
Probab=97.55 E-value=0.00051 Score=69.40 Aligned_cols=137 Identities=15% Similarity=0.095 Sum_probs=91.0
Q ss_pred cccccccccEEEEEEEecCCCeEEEEEechhhHHHHHHHHHHHHHHHhcC---CCceeeEeeeeecCCeeEEEEEccCCC
Q 005040 432 CNLLGTGGFGSVYKGTLSDGTNVAIKIFNLQLERAFRSFDSECEILRNVR---HRNLLKILGSCSNLDFKALVLEFMPNG 508 (717)
Q Consensus 432 ~~~lg~G~~g~V~~~~~~~~~~vavK~~~~~~~~~~~~~~~e~~~l~~l~---hpniv~~~~~~~~~~~~~lv~e~~~~g 508 (717)
.+.|+.|....+|+... +++.+++|+.... ....+..|.+.|+.+. ...+.+.+++....+..++||||+++.
T Consensus 41 ~~~l~gG~~n~~y~v~~-~~~~~vlK~~~~~---~~~~~~~E~~~L~~L~~~~~v~VP~vl~~~~~~g~~~lvme~l~G~ 116 (312)
T 3jr1_A 41 KEKLYSGEMNEIWLIND-EVQTVFVKINERS---YRSMFRAEADQLALLAKTNSINVPLVYGIGNSQGHSFLLLEALNKS 116 (312)
T ss_dssp EEEECCSSSSEEEEEES-SSCEEEEEEEEGG---GHHHHHHHHHHHHHHHHTTSSBCCCEEEEEECSSEEEEEEECCCCC
T ss_pred eEEeCCccceeeeEEEE-CCCeEEEEeCCcc---cHHHHHHHHHHHHHHHhhCCCCcceEEEEeecCCceEEEEEeccCC
Confidence 46789999999999986 4678889987643 2356778999888883 356888888887778899999999987
Q ss_pred CHH--------H---HHhhCCC---------------------CCCHHHHH---HHH----------------HHHHHHH
Q 005040 509 SLE--------K---WLYSHNY---------------------FLDILQRL---NIM----------------IDVGSAL 537 (717)
Q Consensus 509 ~L~--------~---~l~~~~~---------------------~~~~~~~~---~i~----------------~~i~~~l 537 (717)
.+. . .++.... .-+|.... ++. ..++..+
T Consensus 117 ~~~~~~~~~lG~~LA~LH~~~~~~~fG~~~~~~~G~~~q~n~w~~~W~~f~~~~Rl~~~l~~a~~~g~~~~~~~~l~~~l 196 (312)
T 3jr1_A 117 KNKQSSFTIFAEKIAQLHQIQGPDKYGLDFDTWLGPIYQPNDWQTSWAKFFSENRIGWQLQICKEKGLIFGNIDLIVQIV 196 (312)
T ss_dssp CCCTTHHHHHHHHHHHHHHCCCCSSBBCSSCEEETTEEECCCCBSCHHHHHHHHTHHHHHHHHHHHTCCCSCHHHHHHHH
T ss_pred CCCchhHHHHHHHHHHHHcCCCCCCCCCCCCCCCCCcCCCCCCcCCHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHH
Confidence 541 1 1222110 11454322 111 1111111
Q ss_pred -HHHhhcCCCCCeEecCCCCCCeeeCCCCcEEEeeec
Q 005040 538 -EYLHHCHSSAPIIHCDLKPTNILLDENMVAHVSDFG 573 (717)
Q Consensus 538 -~~LH~~~~~~~ivH~dlk~~Nill~~~~~~kl~Dfg 573 (717)
..|........++|+|+.+.|++++.++ +.+.|+.
T Consensus 197 ~~~L~~~~~~~~l~HgD~~~~N~l~~~~~-~~~iD~~ 232 (312)
T 3jr1_A 197 ADTLSKHNPKPSILHGNLWIENCIQVDDK-IFVCNPA 232 (312)
T ss_dssp HHHHTTCCCCCEEECSSCSGGGEEEETTE-EEECSCC
T ss_pred HHHhccCCCCceeEeCCCCcCcEeecCCC-eEEEcCc
Confidence 2332212245799999999999999887 8888874
No 432
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=97.28 E-value=0.00024 Score=61.52 Aligned_cols=62 Identities=18% Similarity=0.286 Sum_probs=44.9
Q ss_pred cccccCcccc-CCCCccccccCccceEeccCCCCCCCCcccccccccccEEEccCCccccccccc
Q 005040 265 TLSLAGNQFQ-GPIPESVGNLISLESLDFSNNNLSGKIPKSLEALSHLKQFNVSHNRLEGEIPVK 328 (717)
Q Consensus 265 ~L~l~~N~l~-~~~~~~~~~l~~L~~L~L~~N~~~~~~~~~~~~l~~L~~L~l~~N~l~~~~p~~ 328 (717)
.++.+++.++ ..+|..+. ++|+.|+|++|+|+.+.+..|..+++|+.|+|++|+|.+.....
T Consensus 12 ~v~Cs~~~L~~~~vP~~lp--~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~~CdC~l~ 74 (130)
T 3rfe_A 12 LVDCGRRGLTWASLPTAFP--VDTTELVLTGNNLTALPPGLLDALPALRTAHLGANPWRCDCRLV 74 (130)
T ss_dssp EEECCSSCCCTTTSCSCCC--TTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSCCBCSGGGH
T ss_pred EEEeCCCCCccccCCCCCC--cCCCEEECCCCcCCccChhhhhhccccCEEEecCCCeeccCccH
Confidence 5666777665 23444332 36888888888888777778888888889999999988766543
No 433
>2pyw_A Uncharacterized protein; 5-methylthioribose kinase, plant methionine recycling, refol transferase; HET: SR1 ADP; 1.90A {Arabidopsis thaliana}
Probab=97.28 E-value=0.00079 Score=71.61 Aligned_cols=80 Identities=15% Similarity=0.114 Sum_probs=48.2
Q ss_pred CCCeEecCCCCCCeeeCCCCcEEEeeeccccccCCCCCceeeeccccCccccCCCccCC---CCcCcccchhhHHHHHHH
Q 005040 546 SAPIIHCDLKPTNILLDENMVAHVSDFGISKLLGEGEDSVIQTMTMATIGYMAPEYGSE---GIVSTKCDVYSYGVLLME 622 (717)
Q Consensus 546 ~~~ivH~dlk~~Nill~~~~~~kl~Dfgl~~~~~~~~~~~~~~~~~~t~~y~aPE~~~~---~~~~~~~Dvws~G~il~e 622 (717)
...++|||+++.||+++.++ ++++||+.+..-....+-. .....-...|.+|+.... .......++......+|+
T Consensus 231 ~~~liHGDl~~~Nil~~~~~-~~lID~e~a~~G~p~~Dla-~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 308 (420)
T 2pyw_A 231 AQALIHGDLHTGSVMVTQDS-TQVIDPEFSFYGPMGFDIG-AYLGNLILAFFAQDGHATQENDRKEYKQWILRTIEQTWN 308 (420)
T ss_dssp CCEEECSCCSGGGEEECSSC-EEECCCTTCEEECHHHHHH-HHHHHHHHHHHHGGGGCCSSCCSHHHHHHHHHHHHHHHH
T ss_pred CCeEEecCCCCCcEEEeCCC-CEEEeCcccccCchHHHHH-HHHHHHHHHHHhcccccccccchHHHHHHHHHHHHHHHH
Confidence 46799999999999999876 9999999887532111100 000001133555554321 112234555678888888
Q ss_pred HHhCC
Q 005040 623 TFTEK 627 (717)
Q Consensus 623 l~tg~ 627 (717)
.++++
T Consensus 309 ~y~~~ 313 (420)
T 2pyw_A 309 LFNKR 313 (420)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 87654
No 434
>3csv_A Aminoglycoside phosphotransferase; YP_614837.1, phosphotransferase enzyme family, structural genomics, JOIN for structural genomics, JCSG; HET: MSE; 2.15A {Silicibacter SP}
Probab=97.11 E-value=0.0017 Score=66.67 Aligned_cols=140 Identities=12% Similarity=0.069 Sum_probs=73.6
Q ss_pred ccccccccEE-EEEEEecCCCeEEEEEechhhHHHHHHHHHHHHHHHhcC-C-CceeeEeeeeecCCeeEEEEEccCCCC
Q 005040 433 NLLGTGGFGS-VYKGTLSDGTNVAIKIFNLQLERAFRSFDSECEILRNVR-H-RNLLKILGSCSNLDFKALVLEFMPNGS 509 (717)
Q Consensus 433 ~~lg~G~~g~-V~~~~~~~~~~vavK~~~~~~~~~~~~~~~e~~~l~~l~-h-pniv~~~~~~~~~~~~~lv~e~~~~g~ 509 (717)
+.|+.|.... +|+....+++.+++|....... ..+..|+++++.+. + -.+.+++.+..+.+ +++||++.+..
T Consensus 24 ~~l~gg~s~~~~~r~~~~~~~~~vlk~~~~~~~---~~~~~e~~~l~~L~~~g~~vP~v~~~d~~~g--~ll~e~l~~~~ 98 (333)
T 3csv_A 24 TPLAGDASSRRYQRLRSPTGAKAVLMDWSPEEG---GDTQPFVDLAQYLRNLDISAPEIYAEEHARG--LLLIEDLGDAL 98 (333)
T ss_dssp CC--------CCEEEECTTCCEEEEEECCTTTT---CCSHHHHHHHHHHHHTTCBCCCEEEEETTTT--EEEECCCCSCB
T ss_pred eECCCCCCCceEEEEEcCCCCeEEEEECCCCCC---ccccHHHHHHHHHHhCCCCCCceeeecCCCC--EEEEeeCCCcc
Confidence 4565565554 6677654477788887654321 23345677777663 2 23455666543333 78999997766
Q ss_pred HHHHHhhCC-------------------------CCCCHHHHH-------H-------------HHHHHHHHHHHHhh--
Q 005040 510 LEKWLYSHN-------------------------YFLDILQRL-------N-------------IMIDVGSALEYLHH-- 542 (717)
Q Consensus 510 L~~~l~~~~-------------------------~~~~~~~~~-------~-------------i~~~i~~~l~~LH~-- 542 (717)
+.+++.... ..++..... . ....+...+..+.+
T Consensus 99 l~~~l~~~~~~~~~~~~~~~~~La~lH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~l~~~~ 178 (333)
T 3csv_A 99 FTEVINNDPAQEMPLYRAAVDLLIHLHDAQTPELARLDPETLSEMTRLAFSEYRYAILGDAAEDNRKRFEHRFAQILSAQ 178 (333)
T ss_dssp HHHHHHHCGGGHHHHHHHHHHHHHHHHTSCCCCCCBCCHHHHHHTTTHHHHTHHHHHHSSCCHHHHHHHHHHHHHHHHHH
T ss_pred hHHHhcCCCccHHHHHHHHHHHHHHHhcCCCccCCccCHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHhc
Confidence 655443210 001111100 0 00011122222211
Q ss_pred cCCCCCeEecCCCCCCeeeCCC----CcEEEeeeccccc
Q 005040 543 CHSSAPIIHCDLKPTNILLDEN----MVAHVSDFGISKL 577 (717)
Q Consensus 543 ~~~~~~ivH~dlk~~Nill~~~----~~~kl~Dfgl~~~ 577 (717)
......++|||+.+.||+++.+ +.+.++||+.+..
T Consensus 179 ~~~~~~lvHgD~~~~Nil~~~~~~~~~~~~lIDf~~a~~ 217 (333)
T 3csv_A 179 LEGDMVFVHRDFHAQNLLWLPEREGLARVGVIDFQDAKL 217 (333)
T ss_dssp CCSCCEEECSCCSGGGEEECTTSCGGGGEEECCCTTCEE
T ss_pred ccCCCeeEeCCcCcccEEeccCcCCCCCeEEEeCCCcCc
Confidence 0114579999999999999875 6899999998764
No 435
>3dxq_A Choline/ethanolamine kinase family protein; NP_106042.1, STR genomics, joint center for structural genomics, JCSG, prote structure initiative; HET: MSE; 2.55A {Mesorhizobium loti}
Probab=97.06 E-value=0.0014 Score=66.15 Aligned_cols=71 Identities=11% Similarity=0.096 Sum_probs=44.1
Q ss_pred cccccccccEEEEEEEecCCCeEEEEEechhhHHHHHHHHHHHHHHHhcCCCce-eeEeeeeecCCeeEEEEEcc-CCCC
Q 005040 432 CNLLGTGGFGSVYKGTLSDGTNVAIKIFNLQLERAFRSFDSECEILRNVRHRNL-LKILGSCSNLDFKALVLEFM-PNGS 509 (717)
Q Consensus 432 ~~~lg~G~~g~V~~~~~~~~~~vavK~~~~~~~~~~~~~~~e~~~l~~l~hpni-v~~~~~~~~~~~~~lv~e~~-~~g~ 509 (717)
++.|+.|....+|+. +.+++|+....... .....+|..+++.+...++ .+++++. .+.-++|+||+ ++.+
T Consensus 23 i~~l~gG~tN~~~~~-----~~~vlR~~~~~~~~-~~~r~~E~~~l~~l~~~g~~P~~~~~~--~~~~~~v~e~i~~g~~ 94 (301)
T 3dxq_A 23 PLERLGGLTNLVFRA-----GDLCLRIPGKGTEE-YINRANEAVAAREAAKAGVSPEVLHVD--PATGVMVTRYIAGAQT 94 (301)
T ss_dssp CEEEESCSSEEEEEE-----TTEEEEEECC-----CCCHHHHHHHHHHHHHTTSSCCEEEEC--TTTCCEEEECCTTCEE
T ss_pred eeEcCCcccccccee-----eeEEEECCCCCccc-eeCHHHHHHHHHHHHHcCCCCceEEEE--CCCCEEEEeecCCCcc
Confidence 578888999999998 56889987643211 1123457888877742222 4555543 33347899999 5544
Q ss_pred H
Q 005040 510 L 510 (717)
Q Consensus 510 L 510 (717)
+
T Consensus 95 l 95 (301)
T 3dxq_A 95 M 95 (301)
T ss_dssp C
T ss_pred C
Confidence 3
No 436
>2ppq_A HSK, HK, homoserine kinase; structural genomics, MCSG, PSI-2, protein structure initiative; 2.00A {Agrobacterium tumefaciens str} SCOP: d.144.1.6
Probab=96.94 E-value=0.0034 Score=63.97 Aligned_cols=155 Identities=12% Similarity=0.128 Sum_probs=85.0
Q ss_pred HHHHHHHhccCCc-----cccccccccEEEEEEEecCCCeEEEEEechhhHHHHHHHHHHHHHHHhcCCCc--eeeEeee
Q 005040 419 YLDIRRATDEFNE-----CNLLGTGGFGSVYKGTLSDGTNVAIKIFNLQLERAFRSFDSECEILRNVRHRN--LLKILGS 491 (717)
Q Consensus 419 ~~~~~~~~~~~~~-----~~~lg~G~~g~V~~~~~~~~~~vavK~~~~~~~~~~~~~~~e~~~l~~l~hpn--iv~~~~~ 491 (717)
..++.....+|.. .+.|+.|....+|+....+| .+++|+..... ....+..|.++++.+.... +.+++..
T Consensus 9 ~~~l~~~l~~~~~~~~~~~~~i~~G~~n~~~~v~~~~g-~~vlk~~~~~~--~~~~l~~e~~~l~~L~~~g~~vP~~~~~ 85 (322)
T 2ppq_A 9 EDELRNFLTQYDVGSLTSYKGIAEGVENSNFLLHTTKD-PLILTLYEKRV--EKNDLPFFLGLMQHLAAKGLSCPLPLPR 85 (322)
T ss_dssp HHHHHHHHTTBCCCCEEEEEEECC---EEEEEEEESSC-CEEEEEECC-----CCHHHHHHHHHHHHHHTTCCCCCBCCB
T ss_pred HHHHHHHHHhCCCCcceEeeccCCCcccceEEEEeCCc-cEEEEEeCCCC--CHHHHHHHHHHHHHHHHCCCCCCcccCC
Confidence 3445555455554 34566788889999987655 68899887531 1234556777777774212 2333321
Q ss_pred ------eecCCeeEEEEEccCCCCHH-----------H---HHhhC----CCC----C---CHHHHHH------------
Q 005040 492 ------CSNLDFKALVLEFMPNGSLE-----------K---WLYSH----NYF----L---DILQRLN------------ 528 (717)
Q Consensus 492 ------~~~~~~~~lv~e~~~~g~L~-----------~---~l~~~----~~~----~---~~~~~~~------------ 528 (717)
....+..+++++|++|..+. . .++.. ... . .|.....
T Consensus 86 ~~g~~~~~~~g~~~~l~~~l~G~~~~~~~~~~~~~~g~~La~lH~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~ 165 (322)
T 2ppq_A 86 KDGELLGELSGRPAALISFLEGMWLRKPEAKHCREVGKALAAMHLASEGFEIKRPNALSVDGWKVLWDKSEERADEVEKG 165 (322)
T ss_dssp TTCCSCEEETTEEEEEEECCCCBCCSSCCHHHHHHHHHHHHHHHHHTTTCCCCCBCTTSHHHHHHHHHHHGGGGGGTSTT
T ss_pred CCCCEEEEECCEEEEEEEeCCCcCCCCCCHHHHHHHHHHHHHHHHHhccCCCcccCccChHHHHHHHHHHHHHHHhhhhh
Confidence 11235568999999875431 1 11110 000 0 1222110
Q ss_pred HHHHHHHHHHHHhhcC---CCCCeEecCCCCCCeeeCCCCcEEEeeecccc
Q 005040 529 IMIDVGSALEYLHHCH---SSAPIIHCDLKPTNILLDENMVAHVSDFGISK 576 (717)
Q Consensus 529 i~~~i~~~l~~LH~~~---~~~~ivH~dlk~~Nill~~~~~~kl~Dfgl~~ 576 (717)
+...+.+.+.++++.. ....++|+|+.+.||+++.+..+.++||+.+.
T Consensus 166 l~~~l~~~~~~l~~~~~~~~~~~liHgDl~~~Nil~~~~~~~~lIDf~~a~ 216 (322)
T 2ppq_A 166 LREEIRPEIDYLAAHWPKDLPAGVIHADLFQDNVFFLGDELSGLIDFYFAC 216 (322)
T ss_dssp HHHHHHHHHHHHHHHCCCSSCEEEECSCCCGGGEEEETTEEEEECCCTTCE
T ss_pred hHHHHHHHHHHHHhhCcccCCcccCCCCCCccCEEEeCCceEEEecchhcc
Confidence 0112344555555321 13569999999999999987666899998765
No 437
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=96.88 E-value=0.0016 Score=56.31 Aligned_cols=57 Identities=26% Similarity=0.326 Sum_probs=45.4
Q ss_pred cEEECCCCcce-ecCCcCCCCCCCCCEEEcccccccCccCCcccccccccccCccCCcEEeccCCCCc
Q 005040 15 IGLDLGLNSFS-GHIPNTFGNLRHLSVLSLMMNNLTTESSSADQWSFLSSLTNCRNLANLALASNPLG 81 (717)
Q Consensus 15 ~~L~L~~n~i~-~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~l~~l~~L~~L~L~~N~l~ 81 (717)
+.++.++++++ ..+|..+. .+|++|+|++|+|+.++.+. |..+++|++|+|++|.+.
T Consensus 11 ~~v~Cs~~~L~~~~vP~~lp--~~l~~L~Ls~N~l~~l~~~~--------f~~l~~L~~L~L~~NP~~ 68 (130)
T 3rfe_A 11 TLVDCGRRGLTWASLPTAFP--VDTTELVLTGNNLTALPPGL--------LDALPALRTAHLGANPWR 68 (130)
T ss_dssp TEEECCSSCCCTTTSCSCCC--TTCSEEECTTSCCSSCCTTT--------GGGCTTCCEEECCSSCCB
T ss_pred CEEEeCCCCCccccCCCCCC--cCCCEEECCCCcCCccChhh--------hhhccccCEEEecCCCee
Confidence 47889999887 24565432 36899999999999988765 788889999999999886
No 438
>2yle_A Protein spire homolog 1; actin-binding protein, actin polymerization; 1.80A {Homo sapiens} PDB: 2ylf_A 3r7g_A 3rbw_A
Probab=96.78 E-value=0.0068 Score=56.37 Aligned_cols=102 Identities=14% Similarity=0.064 Sum_probs=68.9
Q ss_pred CHHHHHhhCCCCCCHHHHHHHHHHHHHHHHHHhhcCCCCCeEecCCCCCCeeeCCCCcEEEeeeccccccCCCCCceeee
Q 005040 509 SLEKWLYSHNYFLDILQRLNIMIDVGSALEYLHHCHSSAPIIHCDLKPTNILLDENMVAHVSDFGISKLLGEGEDSVIQT 588 (717)
Q Consensus 509 ~L~~~l~~~~~~~~~~~~~~i~~~i~~~l~~LH~~~~~~~ivH~dlk~~Nill~~~~~~kl~Dfgl~~~~~~~~~~~~~~ 588 (717)
+|.+.|+..+.+++++++|.++.|.+.+|.-.-.. ..+ ..+=+.|..|++..+|.|...+ ..+.
T Consensus 34 SL~eIL~~~~~PlsEEqaWALc~Qc~~~L~~~~~~--~~~-~~~i~~~~~i~l~~dG~V~f~~-~~s~------------ 97 (229)
T 2yle_A 34 SLEEILRLYNQPINEEQAWAVCYQCCGSLRAAARR--RQP-RHRVRSAAQIRVWRDGAVTLAP-AADD------------ 97 (229)
T ss_dssp EHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHT--TCC-CCCCCSGGGEEEETTSCEEECC-C---------------
T ss_pred cHHHHHHHcCCCcCHHHHHHHHHHHHHHHHhhhhc--ccC-CceecCCcceEEecCCceeccc-cccc------------
Confidence 89999998888899999999999999998776210 011 1223456899999999987764 1110
Q ss_pred ccccCccccCCCccCCCCcCcccchhhHHHHHHHHHhCCCC
Q 005040 589 MTMATIGYMAPEYGSEGIVSTKCDVYSYGVLLMETFTEKKP 629 (717)
Q Consensus 589 ~~~~t~~y~aPE~~~~~~~~~~~Dvws~G~il~el~tg~~p 629 (717)
.....+.|||... ...+.+.=|||+|+++|.-+--..|
T Consensus 98 --~~~~~~~~pe~~~-~~~te~~~IysLG~tLY~ALDygL~ 135 (229)
T 2yle_A 98 --AGEPPPVAGKLGY-SQCMETEVIESLGIIIYKALDYGLK 135 (229)
T ss_dssp -----------CCSS-SSSCHHHHHHHHHHHHHHHHTTTCC
T ss_pred --ccccCCCChhhcc-ccchHHHHHHHHHHHHHHHhhcCCC
Confidence 0122366888753 3556788999999999998876555
No 439
>3feg_A Choline/ethanolamine kinase; non-protein kinase, choline kinase, structural genomics CONS SGC, hemicholinium-3, phosphorylation; HET: HC7 ADP AMP; 1.30A {Homo sapiens} PDB: 3lq3_A* 2ig7_A*
Probab=96.78 E-value=0.0045 Score=64.21 Aligned_cols=140 Identities=14% Similarity=0.176 Sum_probs=82.4
Q ss_pred ccccccccEEEEEEEec--------CCCeEEEEEechhhHHHHHHHHHHHHHHHhcC-CCceeeEeeeeecCCeeEEEEE
Q 005040 433 NLLGTGGFGSVYKGTLS--------DGTNVAIKIFNLQLERAFRSFDSECEILRNVR-HRNLLKILGSCSNLDFKALVLE 503 (717)
Q Consensus 433 ~~lg~G~~g~V~~~~~~--------~~~~vavK~~~~~~~~~~~~~~~e~~~l~~l~-hpniv~~~~~~~~~~~~~lv~e 503 (717)
+.+..|-...+|+.... +++.+++|+..... .......+|.++++.+. +.-..++++++.+ .+|||
T Consensus 56 ~~lsGG~TN~~y~v~~~~~~~~~~~~~~~~vlR~~g~~~-~~~~~~~rE~~vl~~L~~~gv~P~ll~~~~~----g~v~e 130 (379)
T 3feg_A 56 YPVSGGLSNLLFRCSLPDHLPSVGEEPREVLLRLYGAIL-QGVDSLVLESVMFAILAERSLGPQLYGVFPE----GRLEQ 130 (379)
T ss_dssp EEC-----CCEEEEECCTTSCCCSSCCSEEEEEECC----CCHHHHHHHHHHHHHHHHTTSSCCEEEEETT----EEEEE
T ss_pred EEcCCcccccEEEEEeCCCccccCCCCCeEEEEECCCcc-chHHHHHHHHHHHHHHHhcCCCCeEEEEcCC----ccEEE
Confidence 46766888889998864 35789999874321 22345567999998884 3323566666654 39999
Q ss_pred ccCCCCHH--------------HHH---hhC----CCCCC--HHHHHHHHHHHHH-------------------HHHHH-
Q 005040 504 FMPNGSLE--------------KWL---YSH----NYFLD--ILQRLNIMIDVGS-------------------ALEYL- 540 (717)
Q Consensus 504 ~~~~g~L~--------------~~l---~~~----~~~~~--~~~~~~i~~~i~~-------------------~l~~L- 540 (717)
|++|.++. +.+ +.- +.... +.++.++..++.. .+.+|
T Consensus 131 ~i~G~~l~~~~l~~p~~~~~ia~~La~LH~~~~~~~~~~~~l~~~i~~w~~~~~~~~~~~~~~~~~~~~~~l~~~~~~L~ 210 (379)
T 3feg_A 131 YIPSRPLKTQELREPVLSAAIATKMAQFHGMEMPFTKEPHWLFGTMERYLKQIQDLPPTGLPEMNLLEMYSLKDEMGNLR 210 (379)
T ss_dssp CCSEEECCGGGGGCHHHHHHHHHHHHHHHTCCCSSCCSCCHHHHHHHHHHHHHHHCCCCSCCSCCHHHHTTHHHHHHHHH
T ss_pred EecCccCChhHhCCHHHHHHHHHHHHHHhCCCCCCCCCcccHHHHHHHHHHHHHhccCcccchhhhhhhHHHHHHHHHHH
Confidence 99875432 111 111 11122 3445555444322 22333
Q ss_pred ---hhcCCCCCeEecCCCCCCeeeCCC----CcEEEeeeccccc
Q 005040 541 ---HHCHSSAPIIHCDLKPTNILLDEN----MVAHVSDFGISKL 577 (717)
Q Consensus 541 ---H~~~~~~~ivH~dlk~~Nill~~~----~~~kl~Dfgl~~~ 577 (717)
........++|+|+.+.||+++.+ +.+.++||..+..
T Consensus 211 ~~L~~~~~~~~~~H~D~~~~Nil~~~~~~~~~~~~~IDwE~a~~ 254 (379)
T 3feg_A 211 KLLESTPSPVVFCHNDIQEGNILLLSEPENADSLMLVDFEYSSY 254 (379)
T ss_dssp HHHHTSCCCEEEECSCCCGGGEEEESCC---CCEEECCCTTCEE
T ss_pred HHHhhcCCCcEEEcCCCCCCeEEEcCCCCccCcEEEEecccCCc
Confidence 222224568999999999999876 7899999997753
No 440
>1nw1_A Choline kinase (49.2 KD); phospholipid synthesis, protein kinase fold, transferase; 2.02A {Caenorhabditis elegans} SCOP: d.144.1.8
Probab=96.63 E-value=0.0023 Score=67.95 Aligned_cols=71 Identities=17% Similarity=0.216 Sum_probs=48.1
Q ss_pred cccccccccEEEEEEEecC--------CCeEEEEEechhhHHHHHHHHHHHHHHHhcCCCc-eeeEeeeeecCCeeEEEE
Q 005040 432 CNLLGTGGFGSVYKGTLSD--------GTNVAIKIFNLQLERAFRSFDSECEILRNVRHRN-LLKILGSCSNLDFKALVL 502 (717)
Q Consensus 432 ~~~lg~G~~g~V~~~~~~~--------~~~vavK~~~~~~~~~~~~~~~e~~~l~~l~hpn-iv~~~~~~~~~~~~~lv~ 502 (717)
++.|+.|....+|++...+ ++.+++|+...... ...+..|..+++.+...+ ..++++.+.+ .+|+
T Consensus 78 v~~l~gG~tN~~y~v~~~~~~~~~~~~~~~~vlRi~~~~~~--~~~li~E~~~l~~L~~~g~~P~l~~~~~~----g~v~ 151 (429)
T 1nw1_A 78 ISRIKGGMSNMLFLCRLSEVYPPIRNEPNKVLLRVYFNPET--ESHLVAESVIFTLLSERHLGPKLYGIFSG----GRLE 151 (429)
T ss_dssp EEEECCCTTEEEEEEEECTTSCCSSSCCSEEEEEEECSCCC--HHHHHHHHHHHHHHHHTTSSSCEEEEETT----EEEE
T ss_pred EEEeCCCcccceEEEEeCCCccccCCCCceEEEEEeCCCCc--HHHHHHHHHHHHHHHhCCCCCcEEEEeCC----CEEE
Confidence 4568888889999998753 57899999843211 134456888888884333 3566666543 3899
Q ss_pred EccCCC
Q 005040 503 EFMPNG 508 (717)
Q Consensus 503 e~~~~g 508 (717)
||++|.
T Consensus 152 e~l~G~ 157 (429)
T 1nw1_A 152 EYIPSR 157 (429)
T ss_dssp CCCCEE
T ss_pred EEeCCc
Confidence 999763
No 441
>1zyl_A Hypothetical protein YIHE; putative protein kinase, structural genomics, PSI, protein structure initiative; 2.80A {Escherichia coli} SCOP: d.144.1.6
Probab=96.62 E-value=0.0064 Score=62.05 Aligned_cols=141 Identities=11% Similarity=0.079 Sum_probs=79.8
Q ss_pred ccccccccEEEEEEEecCCCeEEEEEechhhHHHHHHHHHHHHHHHhcCCC--ceeeEeee-----eecCCeeEEEEEcc
Q 005040 433 NLLGTGGFGSVYKGTLSDGTNVAIKIFNLQLERAFRSFDSECEILRNVRHR--NLLKILGS-----CSNLDFKALVLEFM 505 (717)
Q Consensus 433 ~~lg~G~~g~V~~~~~~~~~~vavK~~~~~~~~~~~~~~~e~~~l~~l~hp--niv~~~~~-----~~~~~~~~lv~e~~ 505 (717)
..++ |....||+....+|+.+++|+..... .....+..|..+++.+... .+.+++.. ....+..+++|||+
T Consensus 32 ~~l~-g~~n~~y~v~~~~g~~~vlK~~~~~~-~~~~~~~~E~~~~~~L~~~g~~vp~~~~~~g~~~~~~~g~~~~l~~~i 109 (328)
T 1zyl_A 32 TPLN-SYENRVYQFQDEDRRRFVVKFYRPER-WTADQILEEHQFALQLVNDEVPVAAPVAFNGQTLLNHQGFYFAVFPSV 109 (328)
T ss_dssp EEEC-CSSSEEEEECCTTCCCEEEEEECTTT-SCHHHHHHHHHHHHHHHHTTCSBCCCCCBTTBSCEEETTEEEEEEECC
T ss_pred Eeec-CcccceEEEEcCCCCEEEEEEcCCCC-CCHHHHHHHHHHHHHHHHcCCeecceeecCCcEEEEECCEEEEEEEec
Confidence 3466 77889999887778789999986431 1224556688888877421 23344432 12244568899999
Q ss_pred CCCCHH-----------HH---Hhh----CC----CCCCHHHH----HHH---------------HHHHHHHHHHHhhcC
Q 005040 506 PNGSLE-----------KW---LYS----HN----YFLDILQR----LNI---------------MIDVGSALEYLHHCH 544 (717)
Q Consensus 506 ~~g~L~-----------~~---l~~----~~----~~~~~~~~----~~i---------------~~~i~~~l~~LH~~~ 544 (717)
+|..+. .. ++. .. ...++... ..+ ...+...+..+....
T Consensus 110 ~G~~~~~~~~~~~~~~g~~La~lH~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 189 (328)
T 1zyl_A 110 GGRQFEADNIDQMEAVGRYLGRMHQTGRKQLFIHRPTIGLNEYLIEPRKLFEDATLIPSGLKAAFLKATDELIAAVTAHW 189 (328)
T ss_dssp CCEECCSSCHHHHHHHHHHHHHHHHHHTSSCCSSSCBCSHHHHTHHHHHHHHTCSSSCTTTHHHHHHHHHHHHHHHHHHC
T ss_pred CCCCCCCCCHHHHHHHHHHHHHHHHhhccCCCccCCCCCHHHHHhhHHHHHhhcCcCCHHHHHHHHHHHHHHHHHHHHHh
Confidence 874321 11 111 00 11222111 000 011112233332211
Q ss_pred ---CCCCeEecCCCCCCeeeCCCCcEEEeeeccccc
Q 005040 545 ---SSAPIIHCDLKPTNILLDENMVAHVSDFGISKL 577 (717)
Q Consensus 545 ---~~~~ivH~dlk~~Nill~~~~~~kl~Dfgl~~~ 577 (717)
....++|+|+++.||+++ + .+.++||+.+..
T Consensus 190 ~~~~~~~l~HgD~~~~Nil~~-~-~~~lIDfe~a~~ 223 (328)
T 1zyl_A 190 REDFTVLRLHGDCHAGNILWR-D-GPMFVDLDDARN 223 (328)
T ss_dssp CSCSCCEECCSSCSGGGEEES-S-SEEECCCTTCCE
T ss_pred hhcCCeeeeeCCCCcccEeEc-C-CCEEEECCCCCc
Confidence 135689999999999999 4 899999987653
No 442
>3c5i_A Choline kinase; choline, kinase, malaria, transferase, structural genomics, structural genomics consortium; 2.20A {Plasmodium knowlesi} PDB: 3fi8_A*
Probab=96.19 E-value=0.0031 Score=65.65 Aligned_cols=73 Identities=14% Similarity=0.251 Sum_probs=43.9
Q ss_pred cccccccccEEEEEEEecC---------CCeEEEEEechhhHHHHHHHHHHHHHHHhcCCCc-eeeEeeeeecCCeeEEE
Q 005040 432 CNLLGTGGFGSVYKGTLSD---------GTNVAIKIFNLQLERAFRSFDSECEILRNVRHRN-LLKILGSCSNLDFKALV 501 (717)
Q Consensus 432 ~~~lg~G~~g~V~~~~~~~---------~~~vavK~~~~~~~~~~~~~~~e~~~l~~l~hpn-iv~~~~~~~~~~~~~lv 501 (717)
.+.++.|....+|+....+ ++.+++|+....... ......|.++++.+...+ ..++++... -++|
T Consensus 38 ~~~l~~G~~N~~y~v~~~~~~~~~~~~~~~~~vlRi~~~~~~~-~~~~~~E~~~l~~L~~~g~~P~~~~~~~----~~~v 112 (369)
T 3c5i_A 38 VKQILSGLTNQLFEVGLKEETANNYNSIRTRVLFRIYGKHVDE-LYNTISEFEVYKTMSKYKIAPQLLNTFN----GGRI 112 (369)
T ss_dssp EEEC----CCEEEEEEECHHHHTTCTTSCCEEEEEECCTTGGG-TSCHHHHHHHHHHHHHTTSSCCEEEEET----TEEE
T ss_pred EEEeCCcccceEEEEEeCCCCcccccCCCceEEEEecCCCccc-eecHHHHHHHHHHHHhcCCCCceEEecC----CcEE
Confidence 3467778888999998753 268899987643221 112356888888874323 345665442 2689
Q ss_pred EEccCCCC
Q 005040 502 LEFMPNGS 509 (717)
Q Consensus 502 ~e~~~~g~ 509 (717)
|||++|.+
T Consensus 113 ~e~i~G~~ 120 (369)
T 3c5i_A 113 EEWLYGDP 120 (369)
T ss_dssp EECCCSEE
T ss_pred EEEecCCc
Confidence 99998743
No 443
>2qg7_A Ethanolamine kinase PV091845; malaria, SGC, structural genomics consortium, transferase; 2.41A {Plasmodium vivax}
Probab=96.08 E-value=0.0071 Score=64.52 Aligned_cols=73 Identities=16% Similarity=0.156 Sum_probs=46.9
Q ss_pred cccccccccEEEEEEEecC-CCeEEEEEechhhHHHHHHHHHHHHHHHhcCCCce-eeEeeeeecCCeeEEEEEccCCCC
Q 005040 432 CNLLGTGGFGSVYKGTLSD-GTNVAIKIFNLQLERAFRSFDSECEILRNVRHRNL-LKILGSCSNLDFKALVLEFMPNGS 509 (717)
Q Consensus 432 ~~~lg~G~~g~V~~~~~~~-~~~vavK~~~~~~~~~~~~~~~e~~~l~~l~hpni-v~~~~~~~~~~~~~lv~e~~~~g~ 509 (717)
++.|+.|-...+|+....+ +..+++|+........ -+...|..+++.+...++ .++++.+.. .+||||++|.+
T Consensus 113 i~~lsgG~tN~~y~v~~~~~~~~~vLRi~g~~~~~~-idR~~E~~vl~~L~~~gl~P~ll~~~~~----G~v~e~I~G~~ 187 (458)
T 2qg7_A 113 FQIINGGITNILIKVKDMSKQAKYLIRLYGPKTDEI-INREREKKISCILYNKNIAKKIYVFFTN----GRIEEFMDGYA 187 (458)
T ss_dssp EEEECC--CEEEEEEEETTTTEEEEEEEECC-CCSC-SCHHHHHHHHHHHTTSSSBCCEEEEETT----EEEEECCCSEE
T ss_pred EEEcCCCeEeEEEEEEECCCCceEEEEECCCChhhh-cCHHHHHHHHHHHHhcCCCCCEEEEeCC----eEEEEeeCCcc
Confidence 4568888889999998764 4788899875432111 112468899998864444 566766632 35999998743
No 444
>3i1a_A Spectinomycin phosphotransferase; protein kinase, aminoglycoside phosphotransferase, antibiotic resistance; HET: MES PG4; 1.70A {Legionella pneumophila} PDB: 3i0q_A* 3i0o_A* 3q2m_A*
Probab=95.94 E-value=0.02 Score=58.70 Aligned_cols=32 Identities=19% Similarity=0.312 Sum_probs=27.9
Q ss_pred CCCeEecCCCCCCeeeCCCCcEEEeeeccccc
Q 005040 546 SAPIIHCDLKPTNILLDENMVAHVSDFGISKL 577 (717)
Q Consensus 546 ~~~ivH~dlk~~Nill~~~~~~kl~Dfgl~~~ 577 (717)
...++|+|+.+.||+++.++.+.++||+.+..
T Consensus 205 ~~~~~HgD~~~~N~l~~~~~~~~~iD~e~~~~ 236 (339)
T 3i1a_A 205 KYVLCHSDIHAGNVLVGNEESIYIIDWDEPML 236 (339)
T ss_dssp GCEEECSCCCGGGEEECGGGCEEECCCSSCEE
T ss_pred CceeEeCCCCcCCEEEeCCCeEEEEECCCCee
Confidence 35699999999999999888899999987654
No 445
>3f2s_A CK, chetk-alpha, choline kinase alpha; non-protein kinase, structural genomics consortium, SGC, hemicholinium-3, alternative splicing, cytoplasm; HET: ADP HC6; 1.70A {Homo sapiens} PDB: 3f2r_A* 3g15_A* 2i7q_A 2cko_A 2ckp_A* 2ckq_A*
Probab=95.77 E-value=0.025 Score=58.95 Aligned_cols=140 Identities=19% Similarity=0.199 Sum_probs=82.5
Q ss_pred ccccccccEEEEEEEecC--------CCeEEEEEechhhHH-----------H-------HHHHHHHHHHHHhcC-CCce
Q 005040 433 NLLGTGGFGSVYKGTLSD--------GTNVAIKIFNLQLER-----------A-------FRSFDSECEILRNVR-HRNL 485 (717)
Q Consensus 433 ~~lg~G~~g~V~~~~~~~--------~~~vavK~~~~~~~~-----------~-------~~~~~~e~~~l~~l~-hpni 485 (717)
+.|..|-...+|+....+ ++.|.+++.....+. . .+....|..+++.+. +.-.
T Consensus 58 ~~l~gGlTN~~~~v~~~~~~~~~~~~~~~~llRi~G~~te~~~~~~~~~~~idR~~~~~~~~~~~~E~~~l~~L~~~Gi~ 137 (401)
T 3f2s_A 58 SVIRGGLSNMLFQCSLPDTTATLGDEPRKVLLRLYGAILQMRSCNKEGSEQAQKENEFQGAEAMVLESVMFAILAERSLG 137 (401)
T ss_dssp EEEECSSEEEEEEEECCTTCCCSSSCCSEEEEEEEEC-----------------------CHHHHHHHHHHHHHHHTTSS
T ss_pred EEcCCCccCceEEEEeCCCcccccCCCccEEEEeCCCCcccccccccccchhhhhhhhccchhhHHHHHHHHHHHhcCCC
Confidence 456668888999988753 367889987543211 0 012235888888884 4445
Q ss_pred eeEeeeeecCCeeEEEEEccCCCCHH--------------HHH---hhC----CCCCC--HHHHHHHHHHHH--------
Q 005040 486 LKILGSCSNLDFKALVLEFMPNGSLE--------------KWL---YSH----NYFLD--ILQRLNIMIDVG-------- 534 (717)
Q Consensus 486 v~~~~~~~~~~~~~lv~e~~~~g~L~--------------~~l---~~~----~~~~~--~~~~~~i~~~i~-------- 534 (717)
.++++++.+ .+|+||++|-+|. ..+ +.. ..... +..+.++..++.
T Consensus 138 Pkl~~~~~~----G~i~efI~G~~L~~~dl~~p~~~~~iA~~L~~LH~~~~~~~~~~~~l~~~i~~~~~~l~~~~~~~~~ 213 (401)
T 3f2s_A 138 PKLYGIFPQ----GRLEQFIPSRRLDTEELSLPDISAEIAEKMATFHGMKMPFNKEPKWLFGTMEKYLKEVLRIKFTEES 213 (401)
T ss_dssp CCEEEEETT----EEEEECCCEEECCGGGGGSHHHHHHHHHHHHHHHTCCCSSCCSCCHHHHHHHHHHHHHHHCCCCSHH
T ss_pred CeEEEEeCC----CeEEEecCCccCCHHHHhhHHHHHHHHHHHHHHhCCCCCCCCCcchHHHHHHHHHHHHHhccCcchh
Confidence 567776653 2899999864331 111 111 11122 223333333221
Q ss_pred --------------HHH----HHHhhcCCCCCeEecCCCCCCeeeCCC------CcEEEeeecccc
Q 005040 535 --------------SAL----EYLHHCHSSAPIIHCDLKPTNILLDEN------MVAHVSDFGISK 576 (717)
Q Consensus 535 --------------~~l----~~LH~~~~~~~ivH~dlk~~Nill~~~------~~~kl~Dfgl~~ 576 (717)
.-+ ++|........++|+|+.+.||+++.+ +.+.++||..+.
T Consensus 214 ~~~~~~~~~~~~l~~e~~~l~~~l~~~~~~~v~~H~Dl~~~Nil~~~~~~~~~~~~~~lID~E~a~ 279 (401)
T 3f2s_A 214 RIKKLHKLLSYNLPLELENLRSLLESTPSPVVFCHNDCQEGNILLLEGRENSEKQKLMLIDFEYSS 279 (401)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHTSCCCEEEECSCCCGGGEEEETTGGGCSSSCEEECCCTTCE
T ss_pred hhhhhhhhhhHHHHHHHHHHHHHHhhcCCCeeEEeccCCcccEEEcCCcccCcccceEEEeeccCC
Confidence 112 233333334568999999999999876 789999998765
No 446
>3mes_A Choline kinase; malaria, structural genomics, structural genomics consortium, SGC, transferase; HET: ADP DME PT3; 2.35A {Cryptosporidium parvum}
Probab=93.85 E-value=0.14 Score=53.79 Aligned_cols=140 Identities=14% Similarity=0.174 Sum_probs=82.8
Q ss_pred cccccccccEEEEEEEecC--------CCeEEEEEechhhHHHHHHHHHHHHHHHhcC-CCceeeEeeeeecCCeeEEEE
Q 005040 432 CNLLGTGGFGSVYKGTLSD--------GTNVAIKIFNLQLERAFRSFDSECEILRNVR-HRNLLKILGSCSNLDFKALVL 502 (717)
Q Consensus 432 ~~~lg~G~~g~V~~~~~~~--------~~~vavK~~~~~~~~~~~~~~~e~~~l~~l~-hpniv~~~~~~~~~~~~~lv~ 502 (717)
++.+..|-...+|+....+ ++.+++|+..... +..-+..+|.++++.+. +.-..++++.+. -++|+
T Consensus 75 v~~lsGG~TN~~y~v~~~~~~~~~~~~~~~~vlRi~g~~t-~~~idR~~E~~~l~~L~~~gi~P~l~~~~~----~~~I~ 149 (424)
T 3mes_A 75 VKQIFSGLTNQLFVVSIVNESMSLSLKHPRILFRIYGKHV-GKFYDSKVELDVFRYLSNINIAPNIIADFP----EGRIE 149 (424)
T ss_dssp EEEECCCSSSEEEEEEECCC-----CCCSEEEEEECCCCC--CCCCHHHHHHHHHHHHHTTSSCCEEEEET----TEEEE
T ss_pred EEEcCCCcccceEEEEeCCCcccccCCCCeEEEEECCCCc-chhcCHHHHHHHHHHHHhcCCCCCEEEEcC----CCEEE
Confidence 3567778888999998753 5789999875432 11122356888888874 322345555432 27899
Q ss_pred EccCCCCHH--------------HHH---h---h---------CCCCCCHHHHHHHHHHH-------------------H
Q 005040 503 EFMPNGSLE--------------KWL---Y---S---------HNYFLDILQRLNIMIDV-------------------G 534 (717)
Q Consensus 503 e~~~~g~L~--------------~~l---~---~---------~~~~~~~~~~~~i~~~i-------------------~ 534 (717)
||++|.+|. +.+ + . ...+..+.++..+..++ .
T Consensus 150 efI~G~~l~~~~l~~~~~~~~ia~~La~LH~~~~~~~~L~~~~~~~p~~~~~i~~w~~~~~~~~~~~~~~~~~~~~~~l~ 229 (424)
T 3mes_A 150 EFIDGEPLTTKQLQLTHICVEVAKNMGSLHIINSKRADFPSRFDKEPILFKRIYLWREEAKIQVSKNNFQIDKELYSKIL 229 (424)
T ss_dssp ECCCSEECCTGGGGSHHHHHHHHHHHHHHHTHHHHCTTSCTTSCCSCCHHHHHHHHHHHHHHHHHTCC--CCHHHHHHHH
T ss_pred EEeCCccCChhhcCCHHHHHHHHHHHHHHhcCchhhccCccccCCCCcHHHHHHHHHHHHHHhhcccchhhccccHHHHH
Confidence 999885431 111 1 0 00111244444433322 2
Q ss_pred HHHHHHhh--------------------cCCCCCeEecCCCCCCeeeCCCCcEEEeeeccccc
Q 005040 535 SALEYLHH--------------------CHSSAPIIHCDLKPTNILLDENMVAHVSDFGISKL 577 (717)
Q Consensus 535 ~~l~~LH~--------------------~~~~~~ivH~dlk~~Nill~~~~~~kl~Dfgl~~~ 577 (717)
..+.+|.+ ......++|+|+.+.||+ +.++.+.++||..+..
T Consensus 230 ~e~~~L~~~l~~~~~~~~~r~~~~~~~~~~~~~~~~H~D~~~~N~l-~~~~~~~~IDwe~a~~ 291 (424)
T 3mes_A 230 EEIDQLEELIMGGEKFSMERALELKLYSPAFSLVFAHNDLQENNLL-QTQNNIRMIDYEYSAI 291 (424)
T ss_dssp HHHHHHHHHHHTSSCCCHHHHHHHHTTCGGGCEEEECSCCCGGGEE-ECSSCEEECCCTTCEE
T ss_pred HHHHHHHHHHhhhcccccccccccccccCCCCceEECCCCCcccee-cCCCcEEEEecccCCc
Confidence 22333321 111345899999999999 8888999999998764
No 447
>3g15_A CK, chetk-alpha, choline kinase alpha; non-protein kinase, structural genomics CONS SGC, hemicholinium-3, transferase; HET: ADP HC6; 1.70A {Homo sapiens} PDB: 3f2r_A* 2i7q_A 2cko_A 2ckp_A* 2ckq_A*
Probab=91.70 E-value=0.35 Score=50.58 Aligned_cols=29 Identities=34% Similarity=0.406 Sum_probs=24.7
Q ss_pred eEecCCCCCCeee------CCCCcEEEeeeccccc
Q 005040 549 IIHCDLKPTNILL------DENMVAHVSDFGISKL 577 (717)
Q Consensus 549 ivH~dlk~~Nill------~~~~~~kl~Dfgl~~~ 577 (717)
++|+|+.+.||++ +++..+.++||.+|..
T Consensus 246 fcHnDl~~gNil~~~~~~~~~~~~l~vIDwEya~~ 280 (401)
T 3g15_A 246 FCHNDCQEGNILLLEGRENSEKQKLMLIDFEYSSY 280 (401)
T ss_dssp EECSCCCGGGEEEETTGGGCSSCCEEECCCTTCEE
T ss_pred eEEecCCCCeEEEecCcccCcCCeEEEechHhccC
Confidence 5799999999999 4567799999998763
No 448
>2ks1_B Epidermal growth factor receptor; ERBB1, ERBB2, transmembrane, heterodimer, complex, tyrosine receptor, bicelles, transferase; NMR {Homo sapiens}
Probab=76.50 E-value=2.7 Score=27.71 Aligned_cols=18 Identities=22% Similarity=0.434 Sum_probs=7.2
Q ss_pred hhHHHHHHHHHhhhhhcc
Q 005040 379 ILSTVLLVIIIIMYVRCR 396 (717)
Q Consensus 379 ~~~~~~~~~~~~~~~~~~ 396 (717)
++.+++++.+++++.++|
T Consensus 21 v~~~~ii~~~~~~~~RRr 38 (44)
T 2ks1_B 21 LLLLLVVALGIGLFMRRR 38 (44)
T ss_dssp HHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHhhhh
Confidence 333333343344444333
No 449
>4ann_A ESSB; membrane protein, membrane secretion, ESS type VII secretion virulence; 1.05A {Staphylococcus aureus subsp}
Probab=76.37 E-value=3.4 Score=38.33 Aligned_cols=119 Identities=14% Similarity=0.205 Sum_probs=78.7
Q ss_pred CCCceeeEeeeeecCCeeEEEEEccCCC-CHHHHHhhCCCCCCHHHHHHHHHHHHHHHHHHhhcCCCCCeEecCCCCCCe
Q 005040 481 RHRNLLKILGSCSNLDFKALVLEFMPNG-SLEKWLYSHNYFLDILQRLNIMIDVGSALEYLHHCHSSAPIIHCDLKPTNI 559 (717)
Q Consensus 481 ~hpniv~~~~~~~~~~~~~lv~e~~~~g-~L~~~l~~~~~~~~~~~~~~i~~~i~~~l~~LH~~~~~~~ivH~dlk~~Ni 559 (717)
.||+.+.. .+-.+.+.+.+.++.-+.+ ++.. ++. .+...+++++.+|+....+++ .-+|--+.|+|+
T Consensus 43 ~~~~Fl~~-~I~e~eD~v~~~y~~~~~~~~f~~-ik~----~~~~eKlr~l~ni~~l~~~~~------~r~tf~L~P~NL 110 (215)
T 4ann_A 43 HSPYFIDA-ELTELRDSFQIHYDINDNHTPFDN-IKS----FTKNEKLRYLLNIKNLEEVNR------TRYTFVLAPDEL 110 (215)
T ss_dssp CCTTBCCE-EEEECSSEEEEEECCCTTSEEGGG-GGG----SCHHHHHHHHHHGGGGGGGGG------SSEECCCSGGGE
T ss_pred cCCcccce-EEEEcccEEEEEEEcCcccCCHHH-HHh----cCHHHHHHHHHHHHHHHHHhc------CceEEEEecceE
Confidence 68888866 4555566555555443211 2222 222 678899999999998886666 246778999999
Q ss_pred eeCCCCcEEEeeeccccccCCCCCceeeeccccCccccCCCccCCCCcCcccchhhHHHHHHHHHhCCCCCCcccc
Q 005040 560 LLDENMVAHVSDFGISKLLGEGEDSVIQTMTMATIGYMAPEYGSEGIVSTKCDVYSYGVLLMETFTEKKPTDEMFT 635 (717)
Q Consensus 560 ll~~~~~~kl~Dfgl~~~~~~~~~~~~~~~~~~t~~y~aPE~~~~~~~~~~~Dvws~G~il~el~tg~~p~~~~~~ 635 (717)
+++.++.+++.=.|+-..+ +|. ..+...=.-.+=+++..+++++..|+....
T Consensus 111 ~f~~~~~p~i~~RGik~~l-------------------~P~-----~~~ee~fL~qyKAliiall~~K~~Fe~l~~ 162 (215)
T 4ann_A 111 FFTRDGLPIAKTRGLQNVV-------------------DPL-----PVSEAEFLTRYKALVICAFNEKQSFDALVE 162 (215)
T ss_dssp EECTTSCEEESCCEETTTB-------------------SCC-----CCCHHHHHHHHHHHHHHHHCTTCCHHHHHH
T ss_pred EEcCCCCEEEEEccCccCC-------------------CCC-----CCCHHHHHHHHHHHHHHHHcCCCCHHHHHc
Confidence 9999999999877754322 222 112222334567888999999998866433
No 450
>3cxl_A N-chimerin; SH2, RHO-GAP, structural genomics consortium, SGC, gtpas activation, metal-binding, phorbol-ester binding, SH2 domai finger; 2.60A {Homo sapiens} PDB: 1xa6_A
Probab=76.35 E-value=0.31 Score=51.94 Aligned_cols=59 Identities=12% Similarity=0.044 Sum_probs=16.8
Q ss_pred ccccccccccEEEEEEEecC-CCeEEE------EEechhh--HHHHHHHHHHHHHHHhcCCCceeeEeeee
Q 005040 431 ECNLLGTGGFGSVYKGTLSD-GTNVAI------KIFNLQL--ERAFRSFDSECEILRNVRHRNLLKILGSC 492 (717)
Q Consensus 431 ~~~~lg~G~~g~V~~~~~~~-~~~vav------K~~~~~~--~~~~~~~~~e~~~l~~l~hpniv~~~~~~ 492 (717)
+.+.+| ||.||+|.+.. ..+||| |..+... .+....+.+|..+++.++|||+++.+++.
T Consensus 146 l~~~lG---fG~v~~g~~~~~~~~Vav~~~~~~K~~~~~~~~~e~~~~~~rea~l~~~~~H~niv~~h~f~ 213 (463)
T 3cxl_A 146 IYEHVG---YTTLNREPAYKKHMPVLKETHDERDSTGQDGVSEKRLTSLVRRATLKENEQIPKYEKIHNFK 213 (463)
T ss_dssp STTTSS---BCCC---------CCBGGGC-----------------------------------CBCCCEE
T ss_pred ccccCC---chhhhcccccccCCchhhhhccCccccccccccccccccccccccccccccccccCCCcceE
Confidence 445676 99999999863 467888 6554322 23345677889999999999999988764
No 451
>4ano_A ESSB; membrane protein, membrane secretion, ESS type V secretion S; HET: MSE; 1.70A {Geobacillus thermodenitrificans ng80-2organism_taxid}
Probab=74.86 E-value=9.6 Score=35.39 Aligned_cols=115 Identities=10% Similarity=0.089 Sum_probs=76.2
Q ss_pred CCCceeeEeeeeecCCeeEEEEEccCCC-CHHHHHhhCCCCCCHHHHHHHHHHHHHHHH-HHhhcCCCCCeEecCCCCCC
Q 005040 481 RHRNLLKILGSCSNLDFKALVLEFMPNG-SLEKWLYSHNYFLDILQRLNIMIDVGSALE-YLHHCHSSAPIIHCDLKPTN 558 (717)
Q Consensus 481 ~hpniv~~~~~~~~~~~~~lv~e~~~~g-~L~~~l~~~~~~~~~~~~~~i~~~i~~~l~-~LH~~~~~~~ivH~dlk~~N 558 (717)
.||.. -..+-.+.+...+.++.-+++ ++. .++. .+...+++++.+++.... +++ .-+|--+.|+|
T Consensus 48 ~~~~f--~~~I~~~eD~~~i~y~~~~~~~~f~-~i~~----~~~~eKlrll~nl~~L~~~~~~------~r~tf~l~P~N 114 (219)
T 4ano_A 48 VDPCI--VRDIDVSEDEVKVVIKPPSSFLTFA-AIRK----TTLLSRIRAAIHLVSKVKHHSA------RRLIFIVCPEN 114 (219)
T ss_dssp SCSSS--EEEEEECSSEEEEEEECCTTCEEHH-HHHT----SCHHHHHHHHHHHHHHHSSCCS------SSEECCCCGGG
T ss_pred cCCCC--CeEEEEeCCEEEEEEEcCcccCcHH-HHHh----cCHHHHHHHHHHHHHHHHHhhh------CceeEEEeCce
Confidence 68888 344446667666666654333 333 3333 678889999999888776 555 35777899999
Q ss_pred eeeCCCCcEEEeeeccccccCCCCCceeeeccccCccccCCCccCCCCcCcccchhhHHHHHHHHHhCCCCCCc
Q 005040 559 ILLDENMVAHVSDFGISKLLGEGEDSVIQTMTMATIGYMAPEYGSEGIVSTKCDVYSYGVLLMETFTEKKPTDE 632 (717)
Q Consensus 559 ill~~~~~~kl~Dfgl~~~~~~~~~~~~~~~~~~t~~y~aPE~~~~~~~~~~~Dvws~G~il~el~tg~~p~~~ 632 (717)
+++|.++.+++.-.|+-.. ++|.-. ++.-=.-.+=+++..++.++..|+.
T Consensus 115 L~f~~~~~p~i~hRGi~~~-------------------lpP~e~-----~ee~fl~qyKali~all~~K~~Fe~ 164 (219)
T 4ano_A 115 LMFNRALEPFFLHVGVKES-------------------LPPDEW-----DDERLLREVKATVLALTEGEYRFDE 164 (219)
T ss_dssp EEECTTCCEEESCCEETTT-------------------BSSCSC-----CHHHHHHHHHHHHHHHTTCSSCHHH
T ss_pred EEEeCCCcEEEEEcCCccc-------------------CCCCCC-----CHHHHHHHHHHHHHHHHcCCCCHHH
Confidence 9999999999987775432 233221 1111233566788888888887754
No 452
>2lz0_A Uncharacterized protein; hypothetical leucine rich repeat protein, structural genomic unknown function; NMR {Bacteroides capillosus}
Probab=70.96 E-value=9.4 Score=30.51 Aligned_cols=42 Identities=14% Similarity=0.044 Sum_probs=18.3
Q ss_pred cCCccccccCCCCEEeccCCcccccCCccccCCCCCCEEeccC
Q 005040 132 TIPTSIGTLQQLQGFYVPENNLQGYVPHDLCHLERLNILNLSG 174 (717)
Q Consensus 132 ~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~ 174 (717)
+...+|.++.+|+.+.|..+ ++.+...+|.++.+|+.+.+.+
T Consensus 11 I~~~aF~~c~~L~~i~iP~~-v~~Ig~~aF~~C~~L~~i~~~~ 52 (100)
T 2lz0_A 11 MDKSLFAGNTVIREITVQPN-IGLLYDGMFSGCTALEKLILTG 52 (100)
T ss_dssp SCSCTTTTCTTCCCEEECTT-SSCCCTTSSTTCTTCCCEEECC
T ss_pred ecHHHhcCCCCCcEEEcCCc-hheEcHHHHhccCCccEEEEcC
Confidence 33344444444444444432 3333444444444444444443
No 453
>2l2t_A Receptor tyrosine-protein kinase ERBB-4; transmembrane dimer, membrane domain, membrane protei; NMR {Homo sapiens}
Probab=66.70 E-value=4.3 Score=26.73 Aligned_cols=20 Identities=20% Similarity=0.423 Sum_probs=7.8
Q ss_pred hhHHHHHHHHHhhhhhcccC
Q 005040 379 ILSTVLLVIIIIMYVRCRNR 398 (717)
Q Consensus 379 ~~~~~~~~~~~~~~~~~~~~ 398 (717)
++.+++++.+++++.++|++
T Consensus 20 v~~v~ii~~~~~~~~RRRr~ 39 (44)
T 2l2t_A 20 LFILVIVGLTFAVYVRRKSI 39 (44)
T ss_dssp HHHHHHHHHHHHHHHHTTCS
T ss_pred HHHHHHHHHHHHHHhhhhhh
Confidence 33333333334444443333
No 454
>2lz0_A Uncharacterized protein; hypothetical leucine rich repeat protein, structural genomic unknown function; NMR {Bacteroides capillosus}
Probab=62.38 E-value=18 Score=28.78 Aligned_cols=47 Identities=13% Similarity=0.108 Sum_probs=26.9
Q ss_pred cccccCCccccCCCCCCEEeccCCcCcccCCccccCCCCCCeEEecCc
Q 005040 152 NLQGYVPHDLCHLERLNILNLSGNKLSGAIPQCLASLTSLRSLYLQSN 199 (717)
Q Consensus 152 ~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N 199 (717)
.++.+...+|.++.+|+.+.+-.+ ++.+...+|.++.+|+.+.+...
T Consensus 7 ~vt~I~~~aF~~c~~L~~i~iP~~-v~~Ig~~aF~~C~~L~~i~~~~~ 53 (100)
T 2lz0_A 7 PVVGMDKSLFAGNTVIREITVQPN-IGLLYDGMFSGCTALEKLILTGE 53 (100)
T ss_dssp CCCSSCSCTTTTCTTCCCEEECTT-SSCCCTTSSTTCTTCCCEEECCS
T ss_pred ccCEecHHHhcCCCCCcEEEcCCc-hheEcHHHHhccCCccEEEEcCC
Confidence 445555556666666666666553 33344556666666666666543
No 455
>3ls8_A Phosphatidylinositol 3-kinase catalytic subunit type 3; alpha/beta protein, PIK3C3, compound 15E, structural genomics, SGC stockholm; HET: AJZ; 2.25A {Homo sapiens} PDB: 3ihy_A
Probab=44.85 E-value=1.5e+02 Score=32.03 Aligned_cols=82 Identities=12% Similarity=0.118 Sum_probs=49.4
Q ss_pred eeEeeeeecCCeeEEEEEccCCCCHHH----------HHhhCC----C--CCCHHHHHHHHHHHH--HHHHHHhhcCCCC
Q 005040 486 LKILGSCSNLDFKALVLEFMPNGSLEK----------WLYSHN----Y--FLDILQRLNIMIDVG--SALEYLHHCHSSA 547 (717)
Q Consensus 486 v~~~~~~~~~~~~~lv~e~~~~g~L~~----------~l~~~~----~--~~~~~~~~~i~~~i~--~~l~~LH~~~~~~ 547 (717)
+..|.+........+ .|++++.++.+ |+.+.. . ...+..+..++..+| ..+.|+=
T Consensus 402 i~~Y~Vipls~~~Gl-IE~V~~~tl~~il~~~~~l~~~f~~~~~~~~~~~~~~~~a~~nF~~S~A~ySvv~YIL------ 474 (614)
T 3ls8_A 402 LTPYKVLATSTKHGF-MQFIQSVPVAEVLDTEGSIQNFFRKYAPSENGPNGISAEVMDTYVKSCAGYCVITYIL------ 474 (614)
T ss_dssp CCCCCEEESSSSEEE-EECCCCEEHHHHHHHTSSHHHHHHHHSBCTTSGGGBCHHHHHHHHHHHHHHHHHHHHH------
T ss_pred eeccEEEEecCCCce-EEEeCCccHHHHHHccChHHHHHHHhCCCccccccccHHHHHHHHHHHHHHhHhheee------
Confidence 445555555544444 47776644444 443211 0 122445555555444 4566665
Q ss_pred CeEecCCCCCCeeeCCCCcEEEeeecccc
Q 005040 548 PIIHCDLKPTNILLDENMVAHVSDFGISK 576 (717)
Q Consensus 548 ~ivH~dlk~~Nill~~~~~~kl~Dfgl~~ 576 (717)
|| +|=.++|||++.+|++.=+|||.+-
T Consensus 475 Gi--gDRH~~NILld~tG~v~HIDFG~~f 501 (614)
T 3ls8_A 475 GV--GDRHLDNLLLTKTGKLFHIDFGYIL 501 (614)
T ss_dssp TC--CCCCTTSEEECTTSCEEECCCSSCT
T ss_pred ec--cCCCCcceeEcCCCCEeeeehHHhh
Confidence 22 5778899999999999999999874
No 456
>2jwa_A Receptor tyrosine-protein kinase ERBB-2; transmembrane helix dimer, protein kinase receptor membrane domain, ATP-binding, glycoprotein; NMR {Homo sapiens} PDB: 2ks1_A
Probab=44.82 E-value=12 Score=24.56 Aligned_cols=20 Identities=25% Similarity=0.459 Sum_probs=8.3
Q ss_pred hhHHHHHHHHHhhhhhcccC
Q 005040 379 ILSTVLLVIIIIMYVRCRNR 398 (717)
Q Consensus 379 ~~~~~~~~~~~~~~~~~~~~ 398 (717)
++.+++++.++++|.++|+.
T Consensus 21 vll~vi~~l~~~~~~RRR~~ 40 (44)
T 2jwa_A 21 ILLVVVLGVVFGILIKRRQQ 40 (44)
T ss_dssp HHHHHHHHHHHHHHHHHHCS
T ss_pred HHHHHHHHHHHHhheehhhh
Confidence 33333334444445444433
No 457
>2x6h_A GH13170P, VPS34, phosphotidylinositol 3 kinase 59F; transferase; 2.90A {Drosophila melanogaster} PDB: 2x6f_A 2x6i_A* 2x6j_A* 2x6k_A*
Probab=41.69 E-value=3.1e+02 Score=30.19 Aligned_cols=44 Identities=23% Similarity=0.220 Sum_probs=31.4
Q ss_pred HHHHHHHHHH--HHHHHHhhcCCCCCeEecCCCCCCeeeCCCCcEEEeeecccc
Q 005040 525 QRLNIMIDVG--SALEYLHHCHSSAPIIHCDLKPTNILLDENMVAHVSDFGISK 576 (717)
Q Consensus 525 ~~~~i~~~i~--~~l~~LH~~~~~~~ivH~dlk~~Nill~~~~~~kl~Dfgl~~ 576 (717)
.+..++..+| ..+.|+= || +|=.++|||++.+|++.=+|||.+-
T Consensus 530 ar~nF~~SlA~~Svv~YIL------Gl--GDRH~~NILid~tG~v~HIDFG~~f 575 (696)
T 2x6h_A 530 VMDTYIKSCAGYCVITYLL------GV--GDRHLDNLLLTTNGKLFHIDFGYIL 575 (696)
T ss_dssp HHHHHHHHHHHHHHHHHHH------TC--CCCCTTTEEECTTSCEEECCCCSCT
T ss_pred HHHHHHHHHHHHHHHHHHc------cC--CCCCCcceEEeCCCCEEEEeehhhh
Confidence 3444444443 4455554 12 6888999999999999999999874
No 458
>1cja_A Protein (actin-fragmin kinase); transferase; HET: AMP; 2.90A {Physarum polycephalum} SCOP: d.144.1.3
Probab=25.78 E-value=2.3e+02 Score=28.05 Aligned_cols=140 Identities=16% Similarity=0.096 Sum_probs=69.6
Q ss_pred CCccccccccccEEEEEEEecCCCeEEEEEechhhHHHHHHHHHHHHHHHhcCCCceeeEeee-------------e---
Q 005040 429 FNECNLLGTGGFGSVYKGTLSDGTNVAIKIFNLQLERAFRSFDSECEILRNVRHRNLLKILGS-------------C--- 492 (717)
Q Consensus 429 ~~~~~~lg~G~~g~V~~~~~~~~~~vavK~~~~~~~~~~~~~~~e~~~l~~l~hpniv~~~~~-------------~--- 492 (717)
+..++..-.|..| ||.+.. ++..|+||... .-..+-+-.++...=.+.-|+..-+.-. +
T Consensus 71 v~~I~~s~~Gstg-vff~~t-d~~~~VVK~s~---~l~~E~l~s~LA~~LGlpiP~~Riv~~~~~E~~e~~~~L~~~~~~ 145 (342)
T 1cja_A 71 FKGIERSEKGTEG-LFFVET-ESGVFIVKRST---NIESETFCSLLCMRLGLHAPKVRVVSSNSEEGTNMLECLAAIDKS 145 (342)
T ss_dssp EEEEEECCSTTSC-EEEEEE-SSCEEEEECCT---THHHHHHHHHHHHHHTCCCCCEEEEESSSHHHHHHHHHHHHHCSS
T ss_pred eeEEEeccCCCCC-eEEEEe-CCCEEEEeCcH---HHHHHHHHHHHHHHhCCCCCCeeEEeeCcHHHHHHHHHHHHhhhh
Confidence 3344455556555 444444 57889999552 1122333334444444455553322211 0
Q ss_pred ------ecCCeeEEEEEccCCCCHHHHHhhC-CCCCCHHHHHHHHHHH--HHHHHHHhhcCCCCCeEe-cCCCCCCeeeC
Q 005040 493 ------SNLDFKALVLEFMPNGSLEKWLYSH-NYFLDILQRLNIMIDV--GSALEYLHHCHSSAPIIH-CDLKPTNILLD 562 (717)
Q Consensus 493 ------~~~~~~~lv~e~~~~g~L~~~l~~~-~~~~~~~~~~~i~~~i--~~~l~~LH~~~~~~~ivH-~dlk~~Nill~ 562 (717)
......+++|||++|..|...-... ...+..+ .+.++ +-++.++....+..+.+. ..-.+.||+++
T Consensus 146 ~~~l~~l~~~~~~l~meyv~G~~L~e~~~~~~~~~f~~~----~~k~LG~Ii~FDi~InN~DR~Pl~W~n~GN~~NIL~~ 221 (342)
T 1cja_A 146 FRVITTLANQANILLMELVRGITLNKLTTTSAPEVLTKS----TMQQLGSLMALDVIVNNSDRLPIAWTNEGNLDNIMLS 221 (342)
T ss_dssp SCHHHHHTTCSEEEEEECCCEEESTTCCSSSHHHHSCHH----HHHHHHHHHHHHHHHTCCSSSCSSSCSCCCGGGEEEE
T ss_pred hHHHHHhhcccceehhhhcCCCccccchhhhhhhhcCHH----HHHhhchhheehhhhcCCccCcccccCCCChhheEEe
Confidence 0122456999999875554311100 0002222 23333 234555554443333322 22578899998
Q ss_pred CCC-cEEEeeeccccc
Q 005040 563 ENM-VAHVSDFGISKL 577 (717)
Q Consensus 563 ~~~-~~kl~Dfgl~~~ 577 (717)
+++ .+.++|-+.+..
T Consensus 222 ~~n~~~~~IDhn~af~ 237 (342)
T 1cja_A 222 ERGATVVPIDSKIIPL 237 (342)
T ss_dssp SBTTCEEECSCCCCCC
T ss_pred CCCCeEEEEcCCcccc
Confidence 654 488899888754
No 459
>2k9y_A Ephrin type-A receptor 2; receptor tyrosine kinase, membrane protein, dimeric transmembrane domain, ephrin receptor, ATP-binding, glycoprotein; NMR {Homo sapiens}
Probab=22.11 E-value=59 Score=20.73 Aligned_cols=6 Identities=17% Similarity=0.362 Sum_probs=2.3
Q ss_pred hhhccc
Q 005040 392 YVRCRN 397 (717)
Q Consensus 392 ~~~~~~ 397 (717)
++.|||
T Consensus 34 ~~~~rR 39 (41)
T 2k9y_A 34 FFIHRR 39 (41)
T ss_dssp HSSSSS
T ss_pred eeEeee
Confidence 333443
No 460
>2klu_A T-cell surface glycoprotein CD4; cell membrane, disulfide bond, HOST- virus interaction, immune response, immunoglobulin domain, lipoprotein; NMR {Homo sapiens}
Probab=21.39 E-value=68 Score=22.93 Aligned_cols=28 Identities=25% Similarity=0.476 Sum_probs=12.1
Q ss_pred hhhhhhHHHHHHHH-HhhhhhcccCCCCC
Q 005040 375 ILPSILSTVLLVII-IIMYVRCRNRSTKH 402 (717)
Q Consensus 375 ~~~~~~~~~~~~~~-~~~~~~~~~~~~~~ 402 (717)
++.+++++++++.+ +++..+|++|+++.
T Consensus 13 vlGg~~~lll~~glcI~ccvkcrhRrrqA 41 (70)
T 2klu_A 13 VLGGVAGLLLFIGLGIFFSVRSRHRRRQA 41 (70)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHSSCCSSSC
T ss_pred HHhHHHHHHHHHHHHHHHhhHHHHHHHHH
Confidence 34444444433333 33355555554443
Done!