Query 005041
Match_columns 717
No_of_seqs 385 out of 2313
Neff 7.9
Searched_HMMs 29240
Date Mon Mar 25 13:35:22 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/005041.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/005041hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1o20_A Gamma-glutamyl phosphat 100.0 4.4E-85 1.5E-89 725.2 43.0 408 292-700 13-426 (427)
2 2wme_A BADH, betaine aldehyde 100.0 1.6E-83 5.5E-88 721.4 40.8 399 270-697 27-484 (490)
3 4ghk_A Gamma-glutamyl phosphat 100.0 2.5E-83 8.4E-88 714.6 38.6 408 292-700 25-443 (444)
4 1vlu_A Gamma-glutamyl phosphat 100.0 6.3E-81 2.2E-85 697.9 40.2 422 292-715 13-463 (468)
5 2h5g_A Delta 1-pyrroline-5-car 100.0 3.9E-80 1.3E-84 690.7 42.4 438 269-715 11-457 (463)
6 3ek1_A Aldehyde dehydrogenase; 100.0 2.7E-80 9.3E-85 698.2 41.4 400 270-698 53-504 (504)
7 3ifg_A Succinate-semialdehyde 100.0 4.5E-80 1.6E-84 694.4 40.4 397 270-695 33-483 (484)
8 3rh9_A Succinate-semialdehyde 100.0 5.1E-80 1.7E-84 696.3 36.9 412 270-711 32-502 (506)
9 3prl_A NADP-dependent glyceral 100.0 1.6E-79 5.6E-84 692.7 41.0 414 270-711 32-501 (505)
10 3ros_A NAD-dependent aldehyde 100.0 1.3E-79 4.6E-84 689.9 39.7 396 271-697 10-459 (484)
11 4f3x_A Putative aldehyde dehyd 100.0 2.3E-79 8E-84 690.3 40.6 399 270-696 45-497 (498)
12 3r31_A BADH, betaine aldehyde 100.0 2.5E-79 8.5E-84 692.4 40.6 398 270-700 35-492 (517)
13 1a4s_A ALDH, betaine aldehyde 100.0 6.1E-79 2.1E-83 688.3 42.4 398 270-698 41-498 (503)
14 3ed6_A Betaine aldehyde dehydr 100.0 2.4E-79 8.3E-84 693.0 38.9 400 269-697 52-511 (520)
15 4e4g_A Methylmalonate-semialde 100.0 3.8E-79 1.3E-83 691.6 38.0 401 270-697 47-506 (521)
16 3u4j_A NAD-dependent aldehyde 100.0 1E-78 3.4E-83 689.1 40.9 400 270-698 43-500 (528)
17 3k2w_A Betaine-aldehyde dehydr 100.0 1E-78 3.6E-83 686.0 40.2 399 270-697 33-489 (497)
18 3pqa_A Lactaldehyde dehydrogen 100.0 7.1E-79 2.4E-83 684.4 38.2 414 270-711 17-482 (486)
19 1o04_A Aldehyde dehydrogenase, 100.0 1.5E-78 5.3E-83 683.9 40.2 398 270-696 40-495 (500)
20 1wnd_A Putative betaine aldehy 100.0 3E-78 1E-82 680.8 41.7 398 270-695 43-494 (495)
21 3iwj_A Putative aminoaldehyde 100.0 1.6E-78 5.6E-83 685.4 39.5 401 270-697 28-490 (503)
22 2o2p_A Formyltetrahydrofolate 100.0 1.1E-78 3.7E-83 687.2 37.1 400 270-695 57-516 (517)
23 3jz4_A Succinate-semialdehyde 100.0 4.9E-78 1.7E-82 678.9 41.9 397 270-695 30-480 (481)
24 3b4w_A Aldehyde dehydrogenase; 100.0 2.9E-78 9.8E-83 681.5 39.2 397 270-696 29-482 (495)
25 1bxs_A Aldehyde dehydrogenase; 100.0 2.7E-78 9.4E-83 682.1 38.9 398 270-696 41-496 (501)
26 3qan_A 1-pyrroline-5-carboxyla 100.0 4.5E-78 1.5E-82 685.3 40.5 414 269-711 55-534 (538)
27 3lns_A Benzaldehyde dehydrogen 100.0 8.5E-78 2.9E-82 672.9 41.3 405 266-695 7-456 (457)
28 2d4e_A 5-carboxymethyl-2-hydro 100.0 7.4E-78 2.5E-82 681.3 40.1 399 269-696 46-505 (515)
29 2w8n_A Succinate-semialdehyde 100.0 1.7E-77 5.9E-82 674.5 42.3 397 270-695 31-485 (487)
30 2j6l_A Aldehyde dehydrogenase 100.0 1.4E-77 4.9E-82 677.2 41.7 401 270-695 42-498 (500)
31 2imp_A Lactaldehyde dehydrogen 100.0 2.5E-77 8.4E-82 672.9 43.1 397 270-695 27-478 (479)
32 1uxt_A Glyceraldehyde-3-phosph 100.0 1.5E-77 5.3E-82 676.6 40.3 399 270-696 37-492 (501)
33 3i44_A Aldehyde dehydrogenase; 100.0 1.1E-77 3.7E-82 676.6 37.3 395 269-694 45-496 (497)
34 2ve5_A BADH, betaine aldehyde 100.0 3.3E-77 1.1E-81 674.2 41.0 399 270-697 27-484 (490)
35 1euh_A NADP dependent non phos 100.0 3.3E-77 1.1E-81 671.2 40.1 396 270-695 23-473 (475)
36 1uzb_A 1-pyrroline-5-carboxyla 100.0 7.2E-77 2.5E-81 673.9 42.5 400 269-695 55-515 (516)
37 3sza_A Aldehyde dehydrogenase, 100.0 5.7E-77 2E-81 666.7 40.5 386 292-697 17-449 (469)
38 3etf_A Putative succinate-semi 100.0 4.7E-77 1.6E-81 668.6 39.3 395 271-695 13-460 (462)
39 4h7n_A Aldehyde dehydrogenase; 100.0 2.7E-77 9.4E-82 671.7 37.2 398 270-697 11-464 (474)
40 4dng_A Uncharacterized aldehyd 100.0 6.5E-77 2.2E-81 670.9 39.1 399 270-697 27-479 (485)
41 3r64_A NAD dependent benzaldeh 100.0 7.2E-77 2.5E-81 672.7 39.5 401 270-699 33-488 (508)
42 1t90_A MMSDH, probable methylm 100.0 2.6E-76 8.9E-81 665.2 37.2 399 270-696 26-480 (486)
43 3ty7_A Putative aldehyde dehyd 100.0 5E-76 1.7E-80 662.5 34.5 391 270-694 28-475 (478)
44 1ez0_A ALDH, aldehyde dehydrog 100.0 2E-75 6.9E-80 661.7 35.6 401 270-694 12-481 (510)
45 3v4c_A Aldehyde dehydrogenase 100.0 1.8E-75 6.3E-80 664.7 34.0 403 269-693 44-515 (528)
46 3ju8_A Succinylglutamic semial 100.0 6.8E-74 2.3E-78 646.2 39.7 393 270-698 25-473 (490)
47 4e3x_A Delta-1-pyrroline-5-car 100.0 3.5E-73 1.2E-77 646.4 37.8 399 270-696 82-551 (563)
48 4f9i_A Proline dehydrogenase/d 100.0 1.3E-72 4.6E-77 674.4 42.1 401 269-697 549-1011(1026)
49 2y53_A Aldehyde dehydrogenase 100.0 2.4E-71 8.1E-76 631.8 37.2 395 270-695 27-518 (534)
50 3haz_A Proline dehydrogenase; 100.0 2.9E-71 1E-75 661.5 38.8 384 292-697 549-988 (1001)
51 3k9d_A LMO1179 protein, aldehy 100.0 2.1E-69 7.2E-74 606.1 37.3 385 292-699 11-452 (464)
52 3my7_A Alcohol dehydrogenase/a 100.0 5.2E-67 1.8E-71 584.8 34.2 382 292-696 6-449 (452)
53 2j5v_A Glutamate 5-kinase; pro 100.0 2.9E-39 9.9E-44 348.9 22.0 255 13-285 1-258 (367)
54 2ako_A Glutamate 5-kinase; str 100.0 3.2E-37 1.1E-41 318.4 20.2 244 17-282 2-250 (251)
55 3d40_A FOMA protein; fosfomyci 100.0 4.1E-34 1.4E-38 299.8 16.0 255 9-285 15-283 (286)
56 3ll9_A Isopentenyl phosphate k 100.0 1.1E-33 3.8E-38 293.9 18.7 254 16-283 2-266 (269)
57 2rd5_A Acetylglutamate kinase- 100.0 3.9E-33 1.3E-37 294.5 19.9 244 16-283 36-297 (298)
58 2ap9_A NAG kinase, acetylgluta 100.0 8.8E-33 3E-37 292.1 21.6 244 16-285 25-291 (299)
59 2v5h_A Acetylglutamate kinase; 100.0 1.1E-32 3.9E-37 293.1 20.5 246 16-285 49-311 (321)
60 2e9y_A Carbamate kinase; trans 100.0 2.4E-32 8.2E-37 290.4 22.7 255 13-284 1-315 (316)
61 3l86_A Acetylglutamate kinase; 100.0 3.6E-32 1.2E-36 282.0 23.3 216 17-266 37-272 (279)
62 3ll5_A Gamma-glutamyl kinase r 100.0 1.9E-32 6.5E-37 281.6 16.8 239 16-282 3-248 (249)
63 2bty_A Acetylglutamate kinase; 100.0 1.3E-31 4.4E-36 281.1 21.8 242 16-285 21-280 (282)
64 2buf_A Acetylglutamate kinase; 100.0 2.5E-31 8.5E-36 280.9 23.4 243 16-285 26-297 (300)
65 3nwy_A Uridylate kinase; allos 100.0 7.4E-32 2.5E-36 279.6 18.1 238 7-283 41-280 (281)
66 3k4o_A Isopentenyl phosphate k 100.0 2.4E-31 8E-36 275.6 19.2 240 17-285 7-265 (266)
67 4axs_A Carbamate kinase; oxido 100.0 5E-31 1.7E-35 278.7 21.2 265 8-284 16-332 (332)
68 2egx_A Putative acetylglutamat 100.0 2.5E-31 8.4E-36 276.8 18.1 235 18-282 1-268 (269)
69 1e19_A Carbamate kinase-like c 100.0 6.6E-31 2.2E-35 278.9 21.0 254 15-283 1-313 (314)
70 2we5_A Carbamate kinase 1; arg 100.0 6.3E-31 2.2E-35 279.1 20.3 252 15-283 1-309 (310)
71 2va1_A Uridylate kinase; UMPK, 100.0 1.2E-30 4.2E-35 269.5 20.5 231 13-283 21-255 (256)
72 2j4j_A Uridylate kinase; trans 100.0 1.4E-30 4.9E-35 264.4 20.1 220 17-284 1-225 (226)
73 2ogx_B Molybdenum storage prot 100.0 2.4E-30 8.1E-35 269.3 20.1 231 17-284 37-269 (270)
74 4a7w_A Uridylate kinase; trans 100.0 6E-30 2.1E-34 261.4 22.0 230 16-282 7-239 (240)
75 1ybd_A Uridylate kinase; alpha 100.0 1.2E-29 3.9E-34 260.0 22.6 230 15-283 6-238 (239)
76 1z9d_A Uridylate kinase, UK, U 100.0 1.6E-29 5.3E-34 260.8 22.1 231 16-285 7-241 (252)
77 3ek6_A Uridylate kinase; UMPK 100.0 7.6E-30 2.6E-34 261.0 19.6 230 15-284 8-241 (243)
78 2a1f_A Uridylate kinase; PYRH, 100.0 1.5E-29 5E-34 260.3 20.9 231 16-285 8-241 (247)
79 2ogx_A Molybdenum storage prot 100.0 8.4E-30 2.9E-34 265.7 18.9 225 18-285 41-272 (276)
80 1gs5_A Acetylglutamate kinase; 100.0 1E-29 3.6E-34 263.2 19.5 238 16-283 2-257 (258)
81 3kzf_A Carbamate kinase; argin 100.0 1.9E-29 6.4E-34 261.7 21.1 258 13-284 2-316 (317)
82 3zzh_A Acetylglutamate kinase; 100.0 4.1E-30 1.4E-34 269.5 14.8 236 16-285 48-302 (307)
83 2brx_A Uridylate kinase; UMP k 100.0 5.4E-30 1.8E-34 262.8 14.9 226 13-283 16-243 (244)
84 3d2m_A Putative acetylglutamat 100.0 6.2E-29 2.1E-33 278.5 23.2 254 16-301 43-323 (456)
85 2jjx_A Uridylate kinase, UMP k 100.0 5.5E-28 1.9E-32 249.6 23.4 238 9-285 5-247 (255)
86 3s6g_A N-acetylglutamate kinas 100.0 3.5E-29 1.2E-33 276.0 14.4 237 16-285 58-311 (460)
87 2ij9_A Uridylate kinase; struc 100.0 2.3E-28 8E-33 246.9 17.5 214 17-283 1-219 (219)
88 4ab7_A Protein Arg5,6, mitocho 100.0 1.1E-28 3.9E-33 271.1 15.1 236 16-285 48-302 (464)
89 3ab4_A Aspartokinase; aspartat 99.9 2.4E-27 8.1E-32 262.0 19.2 232 16-285 1-244 (421)
90 3s6k_A Acetylglutamate kinase; 99.9 1.1E-28 3.9E-33 272.1 6.3 238 16-285 61-314 (467)
91 3l76_A Aspartokinase; alloster 99.9 4.9E-26 1.7E-30 260.8 17.1 231 16-285 1-245 (600)
92 3c1m_A Probable aspartokinase; 99.9 4.3E-23 1.5E-27 230.8 18.9 237 18-285 2-301 (473)
93 2cdq_A Aspartokinase; aspartat 99.9 1.8E-22 6.1E-27 226.1 22.4 244 11-285 21-324 (510)
94 2j0w_A Lysine-sensitive aspart 99.9 1E-22 3.6E-27 225.5 17.9 233 16-285 2-292 (449)
95 3tvi_A Aspartokinase; structur 99.9 2.9E-22 9.9E-27 220.9 15.7 234 17-285 3-279 (446)
96 4gic_A HDH, histidinol dehydro 97.3 0.11 3.7E-06 55.5 26.4 284 365-693 93-400 (423)
97 1kae_A HDH, histidinol dehydro 96.5 0.8 2.7E-05 49.0 24.9 284 365-694 87-394 (434)
98 2b30_A Pvivax hypothetical pro 56.2 12 0.00042 38.1 5.5 56 6-65 15-72 (301)
99 2fiu_A Conserved hypothetical 44.3 42 0.0014 28.1 6.0 69 543-622 2-76 (99)
100 3fgh_A Transcription factor A, 32.4 84 0.0029 23.8 5.6 36 300-335 28-63 (67)
101 2p9j_A Hypothetical protein AQ 32.2 22 0.00076 31.9 2.6 64 9-72 2-70 (162)
102 3r4c_A Hydrolase, haloacid deh 31.8 52 0.0018 32.1 5.5 47 13-63 9-55 (268)
103 3fzq_A Putative hydrolase; YP_ 28.9 60 0.0021 31.6 5.4 48 13-65 2-49 (274)
104 3pdw_A Uncharacterized hydrola 27.9 52 0.0018 32.1 4.6 44 14-63 4-47 (266)
105 3v42_A Folliculin; tumor suppr 27.6 73 0.0025 31.0 5.4 70 420-499 21-90 (226)
106 1rkq_A Hypothetical protein YI 27.5 69 0.0024 31.7 5.6 46 15-65 4-49 (282)
107 3qgm_A P-nitrophenyl phosphata 26.6 50 0.0017 32.2 4.3 44 14-63 6-49 (268)
108 2eqz_A High mobility group pro 25.3 1.2E+02 0.0041 24.3 5.6 37 300-336 47-83 (86)
109 2obb_A Hypothetical protein; s 25.2 33 0.0011 30.9 2.3 47 16-63 3-49 (142)
110 1to0_A Hypothetical UPF0247 pr 24.4 98 0.0033 28.6 5.4 46 18-73 73-119 (167)
111 3hyn_A Putative signal transdu 23.8 87 0.003 29.5 4.9 50 4-63 68-118 (189)
112 1l6r_A Hypothetical protein TA 23.2 66 0.0023 30.9 4.3 46 15-65 4-49 (227)
113 1wr8_A Phosphoglycolate phosph 22.3 1.2E+02 0.004 28.9 5.9 46 15-65 2-47 (231)
114 1k1e_A Deoxy-D-mannose-octulos 22.2 54 0.0018 30.1 3.3 59 10-72 2-69 (180)
115 3f9r_A Phosphomannomutase; try 22.2 83 0.0028 30.7 4.8 45 16-65 4-48 (246)
116 1ns5_A Hypothetical protein YB 21.7 93 0.0032 28.4 4.6 51 13-73 64-114 (155)
117 1v63_A Nucleolar transcription 21.6 1.5E+02 0.0052 24.7 5.7 38 300-337 36-73 (101)
118 1hry_A Human SRY; DNA, DNA-bin 21.3 1.4E+02 0.0047 23.1 5.1 31 302-332 36-66 (76)
119 1xpj_A Hypothetical protein; s 21.2 1.5E+02 0.005 25.5 5.8 43 17-63 2-49 (126)
120 3pgv_A Haloacid dehalogenase-l 20.3 1.2E+02 0.0042 29.7 5.8 46 14-64 19-64 (285)
121 3dao_A Putative phosphatse; st 20.3 1.1E+02 0.0039 30.0 5.5 47 14-64 19-65 (283)
122 1gt0_D Transcription factor SO 20.1 1.2E+02 0.0041 23.8 4.6 32 301-332 33-64 (80)
No 1
>1o20_A Gamma-glutamyl phosphate reductase; TM0293, structural genom JCSG, PSI, protein structure initiative, joint center for S genomics; 2.00A {Thermotoga maritima} SCOP: c.82.1.1
Probab=100.00 E-value=4.4e-85 Score=725.22 Aligned_cols=408 Identities=35% Similarity=0.617 Sum_probs=371.1
Q ss_pred HhhHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHhhchhHHHHHHhhcChhHHHHHHH
Q 005041 292 QVGAREMAVAARESSRRLQALQSQDRRKILLDVADALEANESLIKVENEADVAAAQEAGYAKSLVSRLALKPGKISSLAK 371 (717)
Q Consensus 292 ~~~v~~av~~A~~A~~~w~~~~~~~R~~~L~~~a~~l~~~~~el~~~~~~d~~~~~~~g~~~a~~~~~~~~~~~i~~~~~ 371 (717)
-+++++++++|++||+.|+++|.++|.++|++++++|++|+++|++++++|+++++++|+.++..+++.....|+..+++
T Consensus 13 ~~~~~~av~aA~~A~~~w~~~~~~~R~~~L~~~a~~l~~~~~~la~~~~~e~gk~~~~g~~ea~~~~~~~~~~ev~~~~~ 92 (427)
T 1o20_A 13 MDELLEKAKKVREAWDVLRNATTREKNKAIKKIAEKLDERRKEILEANRIDVEKARERGVKESLVDRLALNDKRIDEMIK 92 (427)
T ss_dssp -CHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTTCCHHHHHHHCCCHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhhccccccccHHHHHHHhcCHHHHHHHHH
Confidence 57999999999999999999999999999999999999999999999999999988777777776777777789999999
Q ss_pred HHHHHhcccccccccccccccCCCceEEEeecceeEEEEEcCCCchhHHHHHHHHHHhCCEEEEeCCcchHHHHHHHHHH
Q 005041 372 SIRILADMEEPIGQILKRTELADGLILEKTSCPLGVLLIVFESRPDALVQIASLAIRSGNGLLLKGGKEAMRSNAILHKV 451 (717)
Q Consensus 372 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~PlGVV~~I~p~~P~~~~~~~~~ALaaGN~vVlKps~~tp~t~~~l~~~ 451 (717)
.+++|++..++.+...+....+.+...+++|+|+|||++|+||||.+++++++|||++||+||+||||.||+|+.+++++
T Consensus 93 ~l~~~a~~~~~~g~~~~~~~~~~~~~~~~~~~P~GVV~~I~p~p~~~~~~~~~~ALaaGNtVVlKps~~tp~t~~~l~~l 172 (427)
T 1o20_A 93 ACETVIGLKDPVGEVIDSWVREDGLRIARVRVPIGPIGIIYESRPNVTVETTILALKSGNTILLRGGSDALNSNKAIVSA 172 (427)
T ss_dssp HHHHHHHSCCCTTCEEEEEECTTSCEEEEEEEECCCEEEECCSCTHHHHHHHHHHHHTTCCEEEECCGGGHHHHHHHHHH
T ss_pred HHHHHHhcccccCccccccccCCCceeEEEeecceeEEEEecCChHHHHHHHHHHHHcCCEEEEECCHhHHHHHHHHHHH
Confidence 99999976655554332111123455688999999999999998888889999999999999999999999999999999
Q ss_pred HHHhcccc-cCcCceEEecC-C-ChhhhhhcCCCCccEEEeecCHHHHHHHHhhcCCCEEEecCCcceEEEcCCCCHHHH
Q 005041 452 ITSAIPDT-VGEKLIGLVTS-R-EEIPDLLKLDDVIDLVIPRGSNKLVSQIKESTKIPVLGHADGICHVYVDKSANLDVA 528 (717)
Q Consensus 452 ~~~al~~a-lP~gvv~vv~~-~-~~~~~~l~~~~~v~~v~fTGs~~~g~~i~~~a~~p~~lElGGk~p~iV~~dADl~~A 528 (717)
+.++|.++ +|+|++|+|+| + ++++++|..||+||+|+||||+++||.|++.+.||+++|||||||+||++|||+|.|
T Consensus 173 ~~~al~eaGlP~gvv~vv~g~~~~~~~~~L~~~~~v~~I~fTGS~~~G~~i~~~a~~~v~lELGGk~p~iV~~dADl~~A 252 (427)
T 1o20_A 173 IREALKETEIPESSVEFIENTDRSLVLEMIRLREYLSLVIPRGGYGLISFVRDNATVPVLETGVGNCHIFVDESADLKKA 252 (427)
T ss_dssp HHHHHTTSSSCGGGEEECCCCCTHHHHHHTTCTTTCSEEEECSCHHHHHHHHHHCSSCBCCCCCCCEEEEECTTSCHHHH
T ss_pred HHHHHHHcCCCcccEEEecCCChHHHHHHHhCCCCccEEEeCCChHHHHHHHHhcCCCEEEecCCCceEEEeCCCCHHHH
Confidence 99988889 99999999996 3 467899999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhhccCCCccccccceEEEcCcccChhhHHHHHHHHHHcCceEecCcccccccc-C--CCCccccccccCceEEEE
Q 005041 529 KNIVIDAKIDYPAACNAMETLLVHKDLACNGALNELVVELQHEGVGLFGGPRASKLLQ-I--PETRLFHHEYNSMVCTVE 605 (717)
Q Consensus 529 ~~~i~~~~~~n~g~C~a~~rv~V~~~i~d~~f~~~l~~~~~~~~~~~~g~~~~~~~~p-i--~~~~~~~eE~FGPVl~v~ 605 (717)
++.+++++|.|+|+|+|++|+|||+++| |+|+++|+++++++++.+.|+++..+++| | ++|++++||+||||++|+
T Consensus 253 a~~i~~~~f~n~G~C~a~~rv~V~~~i~-d~f~~~l~~~~~~~~~~~~gg~~~~~~~Ptl~~~~~~i~~eEiFGPVl~v~ 331 (427)
T 1o20_A 253 VPVIINAKTQRPGTCNAAEKLLVHEKIA-KEFLPVIVEELRKHGVEVRGCEKTREIVPDVVPATEDDWPTEYLDLIIAIK 331 (427)
T ss_dssp HHHHHHHHHSCTTSTTSEEEEEEEHHHH-HHHHHHHHHHHHHTTCEEEECHHHHHHSTTSEECCGGGTTCCCCSSEEEEE
T ss_pred HHHHHHHhccCCCCCCCccEEEEehhhH-HHHHHHHHHHHHHcCCeeecChhhhhhCCcccCCCcchhhcccccceEEEE
Confidence 9999999999999999999999999999 89999999999999888777765445668 5 568899999999999999
Q ss_pred EeCCHHHHHHHHHhcCCCceeEEEecCHHHHHHHHhcCCeeeEEEcCCCCCCCCCccCCccccccccCcccccccchhhc
Q 005041 606 IVDDVRAAIDHIHQHGSAHTDCIVAEDQKVAETFLCQVDSAAVFHNASTRFCDGARFGLGAEVGISTSRIHARGPVGVEG 685 (717)
Q Consensus 606 ~~~~~deAi~~aN~~~~GL~a~I~t~d~~~a~~~~~~l~~G~v~iN~~~~~~~~~pfG~g~~~G~~~~~~~~~g~~g~~~ 685 (717)
+|+|+||||+++|+++|||++||||+|.++++++++++++|+|+||++....+..||||+++||+|.|+++++|++|+++
T Consensus 332 ~~~~~deAi~~aN~~~~gL~a~v~t~d~~~a~~~~~~l~~G~V~iN~~~~~~~~~pfGg~~~SG~g~~~~~~~g~~gl~~ 411 (427)
T 1o20_A 332 VVKNVDEAIEHIKKYSTGHSESILTENYSNAKKFVSEIDAAAVYVNASTRFTDGGQFGFGAEIGISTQRFHARGPVGLRE 411 (427)
T ss_dssp EESSHHHHHHHHHHHCCSSEEEEECSCHHHHHHHHHHCCSSEEEESSCGGGCSTTTTTCSCCSCEECSSSSCCEECCTGG
T ss_pred EECCHHHHHHHHHhCCCCCeEEEEeCCHHHHHHHHHhCCccEEEECCCCccCCCCCCCCcccccccCCcccCCChHHHHH
Confidence 99999999999999999999999999999999999999999999999776677889999999999877767789999999
Q ss_pred ccEEEEEEecCceee
Q 005041 686 LLTTRWILRGNGHVV 700 (717)
Q Consensus 686 ft~~k~v~~~~~~~~ 700 (717)
||+.|+|.++.++.|
T Consensus 412 ~~~~k~v~~~~~~~~ 426 (427)
T 1o20_A 412 LTTYKFVVLGEYHVR 426 (427)
T ss_dssp GEEEEEEEECSSCCC
T ss_pred HhceEEEEECCCccC
Confidence 999999999988876
No 2
>2wme_A BADH, betaine aldehyde dehydrogenase; aldehyde oxidation, NAD, NADP complex, oxidoreductase; HET: NAP CSO; 2.10A {Pseudomonas aeruginosa} PDB: 2wox_A* 3zqa_A* 2xdr_A*
Probab=100.00 E-value=1.6e-83 Score=721.42 Aligned_cols=399 Identities=16% Similarity=0.191 Sum_probs=349.2
Q ss_pred HHHhcCCcceEEEecCCcccccHhhHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHhh
Q 005041 270 IKVLEGKRVGTLFHRDAHLWVKQVGAREMAVAARESSRRLQALQSQDRRKILLDVADALEANESLIKVENEADVAAAQEA 349 (717)
Q Consensus 270 ~~~~tg~~iGT~i~a~~~~~~~~~~v~~av~~A~~A~~~w~~~~~~~R~~~L~~~a~~l~~~~~el~~~~~~d~~~~~~~ 349 (717)
.+|.||+.++++..++ .+|+++|+++|++||+.|+++|..+|.++|++++++|++|+++|++++++|+||+..
T Consensus 27 ~nP~tg~~i~~v~~a~------~~dv~~Av~aA~~A~~~W~~~~~~~R~~~L~~~a~~l~~~~~ela~~~~~e~Gk~~~- 99 (490)
T 2wme_A 27 INPANGEVLAKVQRAS------REDVERAVQSAVEGQKVWAAMTAMQRSRILRRAVDILRERNDELAALETLDTGKPLA- 99 (490)
T ss_dssp ECTTTCCEEEEEECCC------HHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHCCCHH-
T ss_pred eCCCCCCEEEEEeCCC------HHHHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhCCCHH-
Confidence 4588999999999888 899999999999999999999999999999999999999999999999887765421
Q ss_pred chhHHHHHHhhcChhHHHHHHHHHHHHhcccccc-cccccccccCCCceEEEeecceeEEEEEcCC-Cch-hHHHHHHHH
Q 005041 350 GYAKSLVSRLALKPGKISSLAKSIRILADMEEPI-GQILKRTELADGLILEKTSCPLGVLLIVFES-RPD-ALVQIASLA 426 (717)
Q Consensus 350 g~~~a~~~~~~~~~~~i~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~PlGVV~~I~p~-~P~-~~~~~~~~A 426 (717)
++. ..++...++.++++++..+.. +...+. ..+...+++|+|+|||++|+|| ||. +.+++++||
T Consensus 100 ---ea~-------~~~v~~~~~~~~~~a~~~~~~~~~~~~~---~~~~~~~~~~~P~GVv~~I~PwNfP~~~~~~~~a~A 166 (490)
T 2wme_A 100 ---ETR-------SVDIVTGADVLEYYAGLVPAIEGEQIPL---RETSFVYTRREPLGVVAGIGAWNYPVQIALWKSAPA 166 (490)
T ss_dssp ---HHT-------TTHHHHHHHHHHHHHHHGGGCCEEEEEE---ETTEEEEEEEEECSEEEEECCSSSHHHHHHHHHHHH
T ss_pred ---HHH-------HHHHHHHHHHHHHHHhccccccCccccc---cCCcceeEEecceeEEEEeccccCcchhhhhhHHHH
Confidence 221 135777888888888765533 333322 2455678899999999999998 685 678999999
Q ss_pred HHhCCEEEEeCCcchHHHHHHHHHHHHHhcccc-cCcCceEEecC-CChhhhhhcCCCCccEEEeecCHHHHHHHHhhc-
Q 005041 427 IRSGNGLLLKGGKEAMRSNAILHKVITSAIPDT-VGEKLIGLVTS-REEIPDLLKLDDVIDLVIPRGSNKLVSQIKEST- 503 (717)
Q Consensus 427 LaaGN~vVlKps~~tp~t~~~l~~~~~~al~~a-lP~gvv~vv~~-~~~~~~~l~~~~~v~~v~fTGs~~~g~~i~~~a- 503 (717)
|++||+||+||||.||+|+.++++++++ + +|+|++|+|+| +.++++.|..||+||+|+||||+++|+.+++.+
T Consensus 167 LaaGNtVVlKPse~tp~ta~~l~~l~~e----aGlP~gv~~vv~g~g~~~g~~L~~~p~v~~I~FTGS~~~G~~i~~~~a 242 (490)
T 2wme_A 167 LAAGNAMIFKPSEVTPLTALKLAEIYTE----AGVPDGVFNVLTGSGREVGQWLTEHPLIEKISFTGGTSTGKKVMASAS 242 (490)
T ss_dssp HHTTCEEEEECCTTSCHHHHHHHHHHHH----HTCCTTSEEECCSCTTTHHHHHHHCTTCCEEEEESCHHHHHHHHHHHH
T ss_pred HHcCCeEEEECCcCCHHHHHHHHHHHHH----hCCCCCcEEEEeCChHHHHHHHHhCCCCCEEEEECChHHHHHHHHhhh
Confidence 9999999999999999999999999997 7 99999999996 678899999999999999999999999887643
Q ss_pred ---CCCEEEecCCcceEEEcCCCCHHHHHHHHHhhccCCCc-cccccceEEEcCcccChhhHHHHHHHHHHcCc------
Q 005041 504 ---KIPVLGHADGICHVYVDKSANLDVAKNIVIDAKIDYPA-ACNAMETLLVHKDLACNGALNELVVELQHEGV------ 573 (717)
Q Consensus 504 ---~~p~~lElGGk~p~iV~~dADl~~A~~~i~~~~~~n~g-~C~a~~rv~V~~~i~d~~f~~~l~~~~~~~~~------ 573 (717)
.||++||||||||+||++|||+|+|++.+++++|.|+| +|+|++|+|||+++| |+|+++|+++++++.+
T Consensus 243 ~~~lk~v~lELGGk~p~iV~~dAdl~~A~~~~~~~~~~n~GQ~C~a~~rv~V~~~i~-d~f~~~l~~~~~~l~vGdp~~~ 321 (490)
T 2wme_A 243 SSSLKEVTMELGGKSPLIIFPDADLDRAADIAVMANFFSSGQVCTNGTRVFIHRSQQ-ARFEAKVLERVQRIRLGDPQDE 321 (490)
T ss_dssp HHHCCEEEEECCCCCEEEECTTSCHHHHHHHHHHHHHGGGGCCTTCCCEEEEEGGGH-HHHHHHHHHHHHTCCBSCTTST
T ss_pred ccCCceEEEEcCCcCeEEEccCccHHHHHHHHHHHHhccCCCcCCCceeeccchhHH-HHHHHHHHHHHHhCcCCCCccc
Confidence 49999999999999999999999999999999999987 999999999999999 8999999999887531
Q ss_pred ----------------------------eE-ecCccc------cccc--c-C-----CCCccccccccCceEEEEEeCCH
Q 005041 574 ----------------------------GL-FGGPRA------SKLL--Q-I-----PETRLFHHEYNSMVCTVEIVDDV 610 (717)
Q Consensus 574 ----------------------------~~-~g~~~~------~~~~--p-i-----~~~~~~~eE~FGPVl~v~~~~~~ 610 (717)
++ .|+.+. .++| | | ++|++++||+||||++|++|+|+
T Consensus 322 ~~~~Gpli~~~~~~rv~~~i~~a~~~Ga~v~~gG~~~~~~~~~~G~~~~Ptvl~~v~~~~~i~~eEiFGPVl~v~~~~~~ 401 (490)
T 2wme_A 322 NTNFGPLVSFPHMESVLGYIESGKAQKARLLCGGERVTDGAFGKGAYVAPTVFTDCRDDMTIVREEIFGPVMSILVYDDE 401 (490)
T ss_dssp TCCBCCCSCHHHHHHHHHHHHHHHHTTCEEEECCSBCCTTTGGGTTCBCCEEEESCCTTSHHHHSCCCSSEEEEEEESCH
T ss_pred cCccCCcCCHHHHHHHHHHHHHHHhcCCEEEECCcccCcccccCCCccCCEEEEcCCCCChhhhccccCCEEEEEEeCCH
Confidence 22 243321 2333 5 2 46899999999999999999999
Q ss_pred HHHHHHHHhcCCCceeEEEecCHHHHHHHHhcCCeeeEEEcCCCCCCCCCccCCccccccccCcccccccchhhcccEEE
Q 005041 611 RAAIDHIHQHGSAHTDCIVAEDQKVAETFLCQVDSAAVFHNASTRFCDGARFGLGAEVGISTSRIHARGPVGVEGLLTTR 690 (717)
Q Consensus 611 deAi~~aN~~~~GL~a~I~t~d~~~a~~~~~~l~~G~v~iN~~~~~~~~~pfG~g~~~G~~~~~~~~~g~~g~~~ft~~k 690 (717)
||||+++|+++|||++||||+|.++++++++++++|+|+||+.....+.+||||.|.||+| +++|++|+++||+.|
T Consensus 402 deAi~~aN~~~yGL~a~v~t~d~~~a~~~~~~l~aG~v~iN~~~~~~~~~PFGG~k~SG~G----re~G~~gl~~ft~~K 477 (490)
T 2wme_A 402 DEAIRRANDTEYGLAAGVVTQDLARAHRAIHRLEAGICWINTWGESPAEMPVGGYKQSGVG----RENGLTTLAHYTRIK 477 (490)
T ss_dssp HHHHHHHHCSSCCSEEEEECSBHHHHHHHHHHSCCSEEEESCCSCCCTTSCBCCSGGGEES----CBSHHHHHHTTEEEE
T ss_pred HHHHHHHhcCCCCCeEEEEcCCHHHHHHHHHHCCeeEEEEeCCCCCCCCCCcccccccccC----chhHHHHHHHhhcee
Confidence 9999999999999999999999999999999999999999998777788999999999996 357999999999999
Q ss_pred EEEecCc
Q 005041 691 WILRGNG 697 (717)
Q Consensus 691 ~v~~~~~ 697 (717)
+|+++.+
T Consensus 478 ~v~i~~g 484 (490)
T 2wme_A 478 SVQVELG 484 (490)
T ss_dssp EEEEECS
T ss_pred EEEEECC
Confidence 9998765
No 3
>4ghk_A Gamma-glutamyl phosphate reductase; structural genomics, niaid, national institute of allergy AN infectious diseases; 2.25A {Burkholderia thailandensis}
Probab=100.00 E-value=2.5e-83 Score=714.62 Aligned_cols=408 Identities=36% Similarity=0.618 Sum_probs=351.2
Q ss_pred HhhHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHhhchhHHHHHHhhcChhHHHHHHH
Q 005041 292 QVGAREMAVAARESSRRLQALQSQDRRKILLDVADALEANESLIKVENEADVAAAQEAGYAKSLVSRLALKPGKISSLAK 371 (717)
Q Consensus 292 ~~~v~~av~~A~~A~~~w~~~~~~~R~~~L~~~a~~l~~~~~el~~~~~~d~~~~~~~g~~~a~~~~~~~~~~~i~~~~~ 371 (717)
.+|+++++++|++||+.|+++|.++|.++|++++++|++|+++|++++++|++++++.|+.++..+++..+..++..+++
T Consensus 25 ~~~v~~av~~A~~A~~~w~~~~~~~R~~~L~~~a~~l~~~~~ela~~~~~e~gk~~~~g~~ea~~~~~~~~~~~v~~~~~ 104 (444)
T 4ghk_A 25 DQYMTDVGRRARRASRSIARASTAAKNAALEAVARAIERDAGALKAANARDVARAKDKGLDAAFVDRLTLSDKALKTMVE 104 (444)
T ss_dssp HHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHSHHHHHHHHHHHHCC------CCSHHHHHCCCTTHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhhhCCHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHhhhhhccchHHHHHHhhccHHHHHHHHH
Confidence 57899999999999999999999999999999999999999999999999998877656666666777777789999999
Q ss_pred HHHHHhcccccccccccccccCCCceEEEeecceeEEEEEcCCCchhHHHHHHHHHHhCCEEEEeCCcchHHHHHHHHHH
Q 005041 372 SIRILADMEEPIGQILKRTELADGLILEKTSCPLGVLLIVFESRPDALVQIASLAIRSGNGLLLKGGKEAMRSNAILHKV 451 (717)
Q Consensus 372 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~PlGVV~~I~p~~P~~~~~~~~~ALaaGN~vVlKps~~tp~t~~~l~~~ 451 (717)
.+++++...++.+...+....+.+...+++++|+|||++|+||||.+++++++|||++||+||+||||.||+|+.+++++
T Consensus 105 ~l~~~a~~~~~~g~~~~~~~~~~~~~~~~~~~P~GVV~~I~p~nP~~~~~~~~~ALaaGN~VVlKps~~tp~t~~~l~~l 184 (444)
T 4ghk_A 105 GLRQVATLPDPIGEMSNLKYRPSGIQVGQMRVPLGVIGIIYESRPNVTIDAAALCLKSGNATILRGGSEALESNTALAKL 184 (444)
T ss_dssp HHHHHHHSCCCTTCEEEEEECTTSCEEEEEEEECSEEEEECCSCHHHHHHHHHHHHHTTCEEEEECCGGGHHHHHHHHHH
T ss_pred HHHHHHhhccccCccCCcccCCCCccceEEEeccEEEEEEeCCCcHHHHHHHHHHHHcCCEEEEECCccchHHHHHHHHH
Confidence 99999877665555443221224556788999999999999999977789999999999999999999999999999999
Q ss_pred HHHhcccc-cCcCceEEecC-CC-hhhhhhcCCCCccEEEeecCHHHHHHHHhhcCCCEEEecCCcceEEEcCCCCHHHH
Q 005041 452 ITSAIPDT-VGEKLIGLVTS-RE-EIPDLLKLDDVIDLVIPRGSNKLVSQIKESTKIPVLGHADGICHVYVDKSANLDVA 528 (717)
Q Consensus 452 ~~~al~~a-lP~gvv~vv~~-~~-~~~~~l~~~~~v~~v~fTGs~~~g~~i~~~a~~p~~lElGGk~p~iV~~dADl~~A 528 (717)
+.+++.++ ||+|++|+|+| +. +++++|..||+||+|+||||+.+|+.|++.+.||+++|||||||+||++|||+|.|
T Consensus 185 ~~~~l~~aGlP~gvv~vv~g~~~~~~~~~L~~~p~vd~V~fTGs~~vg~~v~~~a~~pv~lELGGk~p~IV~~dADl~~A 264 (444)
T 4ghk_A 185 IGEGLAEAGLPQDTVQVVETADRAAVGRLITMTEYVDVIVPRGGKSLIERLINEARVPMIKHLDGICHVYVDDRASVTKA 264 (444)
T ss_dssp HHHHHHHTTCCGGGEEECCCCCTHHHHHHTTCTTTCSEEEECSCHHHHHHHHHHCCSCBCCCCCCCCEEEECTTCCHHHH
T ss_pred HHHHHHHcCCCcccEEEEeCCCHHHHHHHHhcCCCccEEEEECcHHHHHHHHHhCCCCEEEEcCCcCeEEECCCCCHHHH
Confidence 98887789 99999999995 44 58899999999999999999999999998889999999999999999999999999
Q ss_pred HHHHHhhccCCCccccccceEEEcCcccChhhHHHHHHHHHHcCceEecCcccccccc-------C-CCCccccccccCc
Q 005041 529 KNIVIDAKIDYPAACNAMETLLVHKDLACNGALNELVVELQHEGVGLFGGPRASKLLQ-------I-PETRLFHHEYNSM 600 (717)
Q Consensus 529 ~~~i~~~~~~n~g~C~a~~rv~V~~~i~d~~f~~~l~~~~~~~~~~~~g~~~~~~~~p-------i-~~~~~~~eE~FGP 600 (717)
++.+++++|.|+|+|+|++|+|||+++| |+|+++|+++++++++.+.|++....++. + ++|++++||+|||
T Consensus 265 a~~i~~~~~~n~G~C~a~~rvlV~~~i~-d~f~~~l~~~~~~~~~~~~g~p~~~~~i~~a~~G~~~~~~~~~~~eEiFGP 343 (444)
T 4ghk_A 265 LTVCDNAKTHRYGTCNTMETLLVARGIA-PAVLSPLGRLYREKGVELRVDADARAVLEAAGVGPLVDATDEDWRTEYLAP 343 (444)
T ss_dssp HHHCC---------CCCCCEEEEEGGGH-HHHHHHHHHHHHHTTCEEEECHHHHHHHHHTTCCCCEECCSGGGTCC---C
T ss_pred HHHHHHHhcCCCcccCcCceEEEeHHHH-HHHHHHHHHHHHHcCCeecCCHHHHHHHHhcccCcccCCCchhhhccccCc
Confidence 9999999999988999999999999999 89999999999998775556543322221 1 4688999999999
Q ss_pred eEEEEEeCCHHHHHHHHHhcCCCceeEEEecCHHHHHHHHhcCCeeeEEEcCCCCCCCCCccCCccccccccCccccccc
Q 005041 601 VCTVEIVDDVRAAIDHIHQHGSAHTDCIVAEDQKVAETFLCQVDSAAVFHNASTRFCDGARFGLGAEVGISTSRIHARGP 680 (717)
Q Consensus 601 Vl~v~~~~~~deAi~~aN~~~~GL~a~I~t~d~~~a~~~~~~l~~G~v~iN~~~~~~~~~pfG~g~~~G~~~~~~~~~g~ 680 (717)
|++|++|+|+||||+++|+++|||++||||+|.++++++++++++|+|+||+++.+.+..|||+|++||+|+++.+++|+
T Consensus 344 Vl~v~~~~~~deAi~~aN~~~~gL~a~v~t~d~~~a~~~a~~l~aG~V~vN~~~~~~~~~pfGg~~~sG~g~~~~~~~G~ 423 (444)
T 4ghk_A 344 VLAIKIVDGIDAAIEHINEYGSHHTDAIVTEDHDRAMRFLREVDSASVMVNASTRFADGFEFGLGAEIGISNDKLHARGP 423 (444)
T ss_dssp EEEEEEESSHHHHHHHHHHHSCSSEEEEECSBHHHHHHHHHHCCSSEEEEEECGGGCSTTTTTCSCCSEEECCSSSCCEE
T ss_pred eEEEEEeCCHHHHHHHHHhCCCCceEEEEeCCHHHHHHHHHhCCcceEEEcCCCccCCCCCcCCcccccccCCcccCCCh
Confidence 99999999999999999999999999999999999999999999999999998877788999999999998777678899
Q ss_pred chhhcccEEEEEEecCceee
Q 005041 681 VGVEGLLTTRWILRGNGHVV 700 (717)
Q Consensus 681 ~g~~~ft~~k~v~~~~~~~~ 700 (717)
+|+++||+.|+|+++.++.|
T Consensus 424 ~gl~~~t~~K~v~~~~~~~~ 443 (444)
T 4ghk_A 424 VGLEGLTSLKYVVLGHGEGR 443 (444)
T ss_dssp ECGGGGEEEEEEEEEEEECC
T ss_pred hHHHhhceEEEEEECCCccc
Confidence 99999999999999988876
No 4
>1vlu_A Gamma-glutamyl phosphate reductase; YOR323C, structural GENO JCSG, protein structure initiative, PSI, joint center for S genomics; 2.29A {Saccharomyces cerevisiae} SCOP: c.82.1.1
Probab=100.00 E-value=6.3e-81 Score=697.95 Aligned_cols=422 Identities=43% Similarity=0.715 Sum_probs=329.2
Q ss_pred HhhHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHhhchhHHHHHHhhc-ChhHHHHHH
Q 005041 292 QVGAREMAVAARESSRRLQALQSQDRRKILLDVADALEANESLIKVENEADVAAAQEAGYAKSLVSRLAL-KPGKISSLA 370 (717)
Q Consensus 292 ~~~v~~av~~A~~A~~~w~~~~~~~R~~~L~~~a~~l~~~~~el~~~~~~d~~~~~~~g~~~a~~~~~~~-~~~~i~~~~ 370 (717)
-..+++++++|++||+.|+++|.++|.++|++++++|++|+++|++++++|++++.++|+.++...++.. +..++++++
T Consensus 13 ~~~~~~av~aA~~A~~~w~~~~~~~R~~~L~~~a~~l~~~~~ela~~~~~e~Gk~~~~g~~ea~~~ev~~~~~~~~~~~a 92 (468)
T 1vlu_A 13 MSSSQQIAKNARKAGNILKTISNEGRSDILYKIHDALKANAHAIEEANKIDLAVAKETGLADSLLKRLDLFKGDKFEVML 92 (468)
T ss_dssp CCHHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHSSCCHHHHHHHCTTSTTHHHHHH
T ss_pred hhhHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcccccccchHHHHHHhhhhHHHHHHHH
Confidence 4578999999999999999999999999999999999999999999999999998766666765567777 778999999
Q ss_pred HHHHHHhcccccccccccccccCCCceEEEeecceeEEEEEcCCCchhHHHHHHHHHHhCCEEEEeCCcchHHHHHHHHH
Q 005041 371 KSIRILADMEEPIGQILKRTELADGLILEKTSCPLGVLLIVFESRPDALVQIASLAIRSGNGLLLKGGKEAMRSNAILHK 450 (717)
Q Consensus 371 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~PlGVV~~I~p~~P~~~~~~~~~ALaaGN~vVlKps~~tp~t~~~l~~ 450 (717)
+.++++....++.|+..+....+.+...+++++|+|||++|+||||.+++++++|||++||+||+||||.||+|+.++++
T Consensus 93 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~P~GVV~~I~pwNP~~~~~~~~~ALaaGN~VVlKps~~tp~t~~~l~~ 172 (468)
T 1vlu_A 93 QGIKDVAELEDPVGKVKMARELDDGLTLYQVTAPVGVLLVIFESRPEVIANITALSIKSGNAAILKGGKESVNTFREMAK 172 (468)
T ss_dssp HHHHHHHHSCCSSSCEEEEEEEETTEEEEEEEEECCEEEEEESSCTHHHHHHHHHHHHHTCEEEEECCGGGHHHHHHHHH
T ss_pred HHHHHHhhcCCCCCeecccccCCCCceeEEEecCcceEEEEeccChHHHHHHHHHHHHcCCEEEEEcCCccHHHHHHHHH
Confidence 99999886555445443311111345668899999999999999986678999999999999999999999999999999
Q ss_pred HHHHhccc----c-cCcCceEEecCCChhhhhhcCCCCccEEEeecCHHHHHHHHhhcCCCEEEecCCcceEEEcCCCCH
Q 005041 451 VITSAIPD----T-VGEKLIGLVTSREEIPDLLKLDDVIDLVIPRGSNKLVSQIKESTKIPVLGHADGICHVYVDKSANL 525 (717)
Q Consensus 451 ~~~~al~~----a-lP~gvv~vv~~~~~~~~~l~~~~~v~~v~fTGs~~~g~~i~~~a~~p~~lElGGk~p~iV~~dADl 525 (717)
+++++|.+ + ||+|++|+|++++++++.|..||+||+|+||||+++||.|++.+.||+++|||||||+||++|||+
T Consensus 173 l~~~aL~e~~~~aGlP~gvv~vv~~~~~~g~~L~~~p~vd~I~fTGS~~~g~~i~~~a~kpv~lElGGk~p~iV~~dADl 252 (468)
T 1vlu_A 173 IVNDTIAQFQSETGVPVGSVQLIETRQDVSDLLDQDEYIDLVVPRGSNALVRKIKDTTKIPVLGHADGICSIYLDEDADL 252 (468)
T ss_dssp HHHHHHHHHHHHHCCCTTSEEECCCC--CGGGGGCTTTCCEEEEESCHHHHHHHHHTCCSCBTTBCSCCEEEEECTTCCH
T ss_pred HHHHHHHhhchhcCCCCCcEEEECCHHHHHHHHhhCCCcCEEEEECCHHHHHHHHHhcCCCEEeecCCccceEECCCCCH
Confidence 99988888 8 999999999933468899999999999999999999999999989999999999999999999999
Q ss_pred HHHHHHHHhhccCCCccccccceEEEcCcccChhhHHHHHHHHHHcCceEecCccccc---------------ccc--C-
Q 005041 526 DVAKNIVIDAKIDYPAACNAMETLLVHKDLACNGALNELVVELQHEGVGLFGGPRASK---------------LLQ--I- 587 (717)
Q Consensus 526 ~~A~~~i~~~~~~n~g~C~a~~rv~V~~~i~d~~f~~~l~~~~~~~~~~~~g~~~~~~---------------~~p--i- 587 (717)
|.|++.+++++|.|+|+|+|++|+|||+++ | +|+++|+++++++++++.|++.... +.| +
T Consensus 253 ~~Aa~~i~~~~~~n~G~C~a~~rvlV~~~i-d-~f~~~l~~~~~~~~v~~~Gdp~~~~~~i~~a~~~~~gG~g~~Ptvlv 330 (468)
T 1vlu_A 253 IKAKRISLDAKTNYPAGCNAMETLLINPKF-S-KWWEVLENLTLEGGVTIHATKDLKTAYFDKLNELGKLTEAIQCKTVD 330 (468)
T ss_dssp HHHHHHHHHTTCC----CCCCEEEEECTTS-T-THHHHHHHHHHHHCCCBEECHHHHHHHHHHHHHHTCCCHHHHTTBC-
T ss_pred HHHHHHHHHHhcCCCCcCCcCcEEEEECCH-H-HHHHHHHHHHHhcCCeecCCHHHhcccccccceeeccCCCCCCceee
Confidence 999999999999998899999999999999 7 9999999999998764445432111 224 2
Q ss_pred -CCCccccccccCceEEEEEeCCHHHHHHHHHhcCCCceeEEEecCHHHHHHHHhcCCeeeEEEcCCCCCCCCCccCCcc
Q 005041 588 -PETRLFHHEYNSMVCTVEIVDDVRAAIDHIHQHGSAHTDCIVAEDQKVAETFLCQVDSAAVFHNASTRFCDGARFGLGA 666 (717)
Q Consensus 588 -~~~~~~~eE~FGPVl~v~~~~~~deAi~~aN~~~~GL~a~I~t~d~~~a~~~~~~l~~G~v~iN~~~~~~~~~pfG~g~ 666 (717)
++|++++||+||||++|++|+|+||||+++|+++|||++||||+|.++++++++++++|+|+||++....+..|||+|+
T Consensus 331 ~~~~~i~~eEiFGPVl~v~~~~~~deAi~~aN~~~~gL~a~v~t~d~~~a~~~~~~l~aG~V~vN~~~~~~~~~pfG~Gg 410 (468)
T 1vlu_A 331 ADEEQDFDKEFLSLDLAAKFVTSTESAIQHINTHSSRHTDAIVTENKANAEKFMKGVDSSGVYWNASTRFADGFRYGFGA 410 (468)
T ss_dssp ------------CCCCEEEECCSHHHHHHHHTTSCSSCEEEEECSCHHHHHHHHHHCCCSEEEESSCGGGCC--------
T ss_pred CCCchhhhcCccCceEEEEEeCCHHHHHHHHHhCCCCceEEEEeCCHHHHHHHHHhCCeeEEEEcCCCCCCCCCCCCCCC
Confidence 4688999999999999999999999999999999999999999999999999999999999999987777788999888
Q ss_pred ccccccCcccccccchhhcccEEEEEEecCceeecC----CCCceeeeccccC
Q 005041 667 EVGISTSRIHARGPVGVEGLLTTRWILRGNGHVVDG----DQGVVYTHKNLAL 715 (717)
Q Consensus 667 ~~G~~~~~~~~~g~~g~~~ft~~k~v~~~~~~~~~~----~~~~~~~~~~~~~ 715 (717)
++|++.|+.++.|++|+++|++.|+|.++.++.|+. .....|+|+.+++
T Consensus 411 ~~G~~~SG~g~~G~~gl~~f~~~K~v~~~~~~~r~py~~~~~~~~~~~~~~~~ 463 (468)
T 1vlu_A 411 EVGISTSKIHARGPVGLDGLVSYQYQIRGDGQVASDYLGAGGNKAFVHKDLDI 463 (468)
T ss_dssp --------------CCSGGGEEEEEEEECSSCCSCCC----------------
T ss_pred CcceecCCCCCCcchHHHHhcceEEEEECCCCcCccccccccccceecCCCCc
Confidence 888877665545999999999999999998888842 2357999998764
No 5
>2h5g_A Delta 1-pyrroline-5-carboxylate synthetase; dehydrogenase, structural genomics, structural genomics CONS SGC, oxidoreductase; 2.25A {Homo sapiens}
Probab=100.00 E-value=3.9e-80 Score=690.68 Aligned_cols=438 Identities=47% Similarity=0.761 Sum_probs=347.8
Q ss_pred HHHHhcCCcceEEEecCCcccccHhhHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHh
Q 005041 269 IIKVLEGKRVGTLFHRDAHLWVKQVGAREMAVAARESSRRLQALQSQDRRKILLDVADALEANESLIKVENEADVAAAQE 348 (717)
Q Consensus 269 l~~~~tg~~iGT~i~a~~~~~~~~~~v~~av~~A~~A~~~w~~~~~~~R~~~L~~~a~~l~~~~~el~~~~~~d~~~~~~ 348 (717)
..+|.+|+.++++..++ .+|+++++++|++||+.|+++|.++|.++|++++++|++|+++|++++++|++..+
T Consensus 11 ~~~P~tg~~~~~~~~~~------~~~v~~av~aA~~A~~~w~~~~~~~R~~~L~~~a~~l~~~~~ela~~~~~e~g~~~- 83 (463)
T 2h5g_A 11 VDLGTENLYFQSMVKPA------GPTVEQQGEMARSGGRMLATLEPEQRAEIIHHLADLLTDQRDEILLANKKDLEEAE- 83 (463)
T ss_dssp ------------------------CCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHT-
T ss_pred CcCCCCCCEEEEecCCC------HHHHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhhccc-
Confidence 46789999999998888 78999999999999999999999999999999999999999999999999986443
Q ss_pred hchhHHHHHHhhcChhHHHHHHHHHHHHhccc-ccccccccccccCCCceEEEeecceeEEEEEcCCCchhHHHHHHHHH
Q 005041 349 AGYAKSLVSRLALKPGKISSLAKSIRILADME-EPIGQILKRTELADGLILEKTSCPLGVLLIVFESRPDALVQIASLAI 427 (717)
Q Consensus 349 ~g~~~a~~~~~~~~~~~i~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~PlGVV~~I~p~~P~~~~~~~~~AL 427 (717)
.|+...+.+++..+..|+..+++.++++++.. +..+...+......+...+++++|+|||++|+||+|....++++|||
T Consensus 84 ~~~Gk~~~~rl~~a~~ev~~~~~~~~~~a~~~~~~~g~~~~~~~~~~~~~~~~~~~P~GVv~~I~p~nP~n~p~~~a~AL 163 (463)
T 2h5g_A 84 GRLAAPLLKRLSLSTSKLNSLAIGLRQIAASSQDSVGRVLRRTRIAKNLELEQVTVPIGVLLVIFESRPDCLPQVAALAI 163 (463)
T ss_dssp TTSCHHHHHTTCCCHHHHHHHHHHHHHHHHHCTTSTTCEEEEEEEETTEEEEEEEEECCEEEEEESSCTTHHHHHHHHHH
T ss_pred ccCCCchhhhhhhhHHHHHHHHHHHHHHHHhhHhhcCcccccccCCCCceeEEEEEcCceEEEEecCCcHHHHHHHHHHH
Confidence 21111222233344578999999999998544 34454332111113455688999999999999998865449999999
Q ss_pred HhCCEEEEeCCcchHHHHHHHHHHHHHhcccccCcCceEEecCCChhhhhhcCCCCccEEEeecCHHHHHHHHhhcC-CC
Q 005041 428 RSGNGLLLKGGKEAMRSNAILHKVITSAIPDTVGEKLIGLVTSREEIPDLLKLDDVIDLVIPRGSNKLVSQIKESTK-IP 506 (717)
Q Consensus 428 aaGN~vVlKps~~tp~t~~~l~~~~~~al~~alP~gvv~vv~~~~~~~~~l~~~~~v~~v~fTGs~~~g~~i~~~a~-~p 506 (717)
++||+||+||||.||+|+.+|++++.+++.++-|+|+||+|+|+.++++.|..||+||+|+||||+++||.|++.+. ||
T Consensus 164 aaGN~VVlKps~~tp~t~~~l~~l~~~al~~~GP~gvv~vv~g~~~~g~~L~~~p~vd~I~FTGS~~~G~~i~~~aal~p 243 (463)
T 2h5g_A 164 ASGNGLLLKGGKEAAHSNRILHLLTQEALSIHGVKEAVQLVNTREEVEDLCRLDKMIDLIIPRGSSQLVRDIQKAAKGIP 243 (463)
T ss_dssp HHTCEEEEECCGGGHHHHHHHHHHHHHHHHTTTCGGGEEECCTTCCC-------CCCSEEEEESCHHHHHHHHHHCSSSC
T ss_pred HcCCEEEEECCCCcHHHHHHHHHHHHHHHHhcCCCCeEEEEcCCHHHHHHHHhCCCcCEEEEECCHHHHHHHHHhcCCCC
Confidence 99999999999999999999999999854311179999999986667888889999999999999999999999886 99
Q ss_pred EEEecCCcceEEEcCCCCHHHHHHHHHhhccCCCccccccceEEEcCcccCh-hhHHHHHHHHHHcCceEecCccc--cc
Q 005041 507 VLGHADGICHVYVDKSANLDVAKNIVIDAKIDYPAACNAMETLLVHKDLACN-GALNELVVELQHEGVGLFGGPRA--SK 583 (717)
Q Consensus 507 ~~lElGGk~p~iV~~dADl~~A~~~i~~~~~~n~g~C~a~~rv~V~~~i~d~-~f~~~l~~~~~~~~~~~~g~~~~--~~ 583 (717)
+++|||||||+||++|||+|.|++.+++++|.|+|+|+|++|+|||+++| | .+++++++.+.+.|++++++... .+
T Consensus 244 v~lElGGk~p~iV~~dADl~~Aa~~i~~~~f~nGQ~C~a~~rvlV~~~i~-d~p~~~~~i~~~~~~Ga~v~~G~~~~~~g 322 (463)
T 2h5g_A 244 VMGHSEGICHMYVDSEASVDKVTRLVRDSKCEYPAACNALETLLIHRDLL-RTPLFDQIIDMLRVEQVKIHAGPKFASYL 322 (463)
T ss_dssp BCSCSCCCEEEEECTTCCTTTHHHHHHHHHHSCTTSTTSEEEEEEEGGGT-TSHHHHHHHHHHHHTTCEEEECHHHHC--
T ss_pred EEEecCCcceEEEcCCCCHHHHHHHHHHHhccCCCccccCcEEEEecccc-chHHHHHHHHHHHhCCCEEEeCCcccccC
Confidence 99999999999999999999999999999999955999999999999999 5 58888888888888887755432 12
Q ss_pred cccC-CCCccccccccCceEEEEEeCCHHHHHHHHHhcCCCceeEEEecCHHHHHHHHhcCCeeeEEEcCCCCCCCCCcc
Q 005041 584 LLQI-PETRLFHHEYNSMVCTVEIVDDVRAAIDHIHQHGSAHTDCIVAEDQKVAETFLCQVDSAAVFHNASTRFCDGARF 662 (717)
Q Consensus 584 ~~pi-~~~~~~~eE~FGPVl~v~~~~~~deAi~~aN~~~~GL~a~I~t~d~~~a~~~~~~l~~G~v~iN~~~~~~~~~pf 662 (717)
++ + ++|++++||+||||++|++|+|+||||+++|+++|||++||||+|.++++++++++++|+|+||++....+.+||
T Consensus 323 ~~-~~~~~~i~~eE~FgPvl~v~~~~~~deAi~~aN~~~~gLaa~v~t~d~~~a~~~~~~l~aG~V~iN~~~~~~~~~Pf 401 (463)
T 2h5g_A 323 TF-SPSEVKSLRTEYGDLELCIEVVDNVQDAIDHIHKYGSSHTDVIVTEDENTAEFFLQHVDSACVFWNASTRFSDGYRF 401 (463)
T ss_dssp --------CCSSCCCCSSEEEEEEESSHHHHHHHHHHHCCSSEEEEECSCHHHHHHHHHHCCSSEEEESSCGGGCSTTTT
T ss_pred cc-CCCCchHHhccccCceEEEEEeCCHHHHHHHHHcCCCCceEEEEeCCHHHHHHHHHhCCeeEEEEeCCccCCCCCCC
Confidence 22 2 468999999999999999999999999999999999999999999999999999999999999998777788999
Q ss_pred CCccccccccCcccccccchhhcccEEEEEEecCceeec--C-CCCceeeeccccC
Q 005041 663 GLGAEVGISTSRIHARGPVGVEGLLTTRWILRGNGHVVD--G-DQGVVYTHKNLAL 715 (717)
Q Consensus 663 G~g~~~G~~~~~~~~~g~~g~~~ft~~k~v~~~~~~~~~--~-~~~~~~~~~~~~~ 715 (717)
||.++||+|++++|++|++|+++||+.|+|.++.++.|+ + .....|+|+.+++
T Consensus 402 GG~k~SG~G~~r~~~~G~~gl~~ft~~K~v~~~~~~~r~~y~~~~~~~~~~~~~~~ 457 (463)
T 2h5g_A 402 GLGAEVGISTSRIHARGPVGLEGLLTTKWLLRGKDHVVSDFSEHGSLKYLHENLPI 457 (463)
T ss_dssp TSSCCSCEECCSSSCCEECCGGGGEEEEEEEECSSCCGGGGSTTSSCCCCCEECCC
T ss_pred CCCccCcCCCCcccCCCHHHHHHhceeEEEEECCCcccCCccccchhhcccccCcc
Confidence 999999998656656799999999999999999888884 2 2346899987754
No 6
>3ek1_A Aldehyde dehydrogenase; ssgcid, oxidoreductase, structural genomics; HET: MES; 2.10A {Brucella melitensis biovar ABORTUS2308}
Probab=100.00 E-value=2.7e-80 Score=698.23 Aligned_cols=400 Identities=17% Similarity=0.185 Sum_probs=350.5
Q ss_pred HHHhcCCcceEEEecCCcccccHhhHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHhh
Q 005041 270 IKVLEGKRVGTLFHRDAHLWVKQVGAREMAVAARESSRRLQALQSQDRRKILLDVADALEANESLIKVENEADVAAAQEA 349 (717)
Q Consensus 270 ~~~~tg~~iGT~i~a~~~~~~~~~~v~~av~~A~~A~~~w~~~~~~~R~~~L~~~a~~l~~~~~el~~~~~~d~~~~~~~ 349 (717)
.+|.+++.++++..++ .+|+++|+++|++||+.|++++.++|.++|++++++|++|+++|++++++|++++..
T Consensus 53 ~nP~tg~~i~~v~~~~------~~dv~~Av~aA~~A~~~w~~~~~~~R~~~L~~~a~~l~~~~~ela~~~~~e~Gk~~~- 125 (504)
T 3ek1_A 53 TNPADGSVIGTVPSLS------VATIKEAIDASAKALSGWAAKTAKERAGILRKWFDLIIANADDIALIMTSEQGKPLA- 125 (504)
T ss_dssp ECTTTCCEEEEEECCC------HHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHCCCHH-
T ss_pred ECCCCCCEEEEEcCCC------HHHHHHHHHHHHHHHHhhccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHH-
Confidence 5688999999998888 899999999999999999999999999999999999999999999999888765431
Q ss_pred chhHHHHHHhhcChhHHHHHHHHHHHHhcccccc-cccccccccCCCceEEEeecceeEEEEEcCC-Cch-hHHHHHHHH
Q 005041 350 GYAKSLVSRLALKPGKISSLAKSIRILADMEEPI-GQILKRTELADGLILEKTSCPLGVLLIVFES-RPD-ALVQIASLA 426 (717)
Q Consensus 350 g~~~a~~~~~~~~~~~i~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~PlGVV~~I~p~-~P~-~~~~~~~~A 426 (717)
++ ..|+..+++.+++++...+.. +...+. ...+...+++|+|+|||++|+|| ||. +.+++++||
T Consensus 126 ---ea--------~~ev~~~~~~~~~~a~~~~~~~g~~~~~--~~~~~~~~~~~~P~GVV~~I~PwN~P~~~~~~~~a~A 192 (504)
T 3ek1_A 126 ---EA--------RGEVLYAASFIEWFAEEAKRVYGDTIPA--PQNGQRLTVIRQPVGVTAAITPWNFPAAMITRKAAPA 192 (504)
T ss_dssp ---HH--------HHHHHHHHHHHHHHHHHHTTCCEEEECC--SSTTEEEEEEEEECCEEEEECCSSSTTHHHHHHHHHH
T ss_pred ---HH--------HHHHHHHHHHHHHHHHHHHHhcCccccc--ccccccceeeccCceEEEEECCCcchHHHHHHHHHHH
Confidence 22 236778888889888765443 332221 12345678899999999999998 685 678999999
Q ss_pred HHhCCEEEEeCCcchHHHHHHHHHHHHHhcccc-cCcCceEEecC-CChhhhhhcCCCCccEEEeecCHHHHHHHHhhcC
Q 005041 427 IRSGNGLLLKGGKEAMRSNAILHKVITSAIPDT-VGEKLIGLVTS-REEIPDLLKLDDVIDLVIPRGSNKLVSQIKESTK 504 (717)
Q Consensus 427 LaaGN~vVlKps~~tp~t~~~l~~~~~~al~~a-lP~gvv~vv~~-~~~~~~~l~~~~~v~~v~fTGs~~~g~~i~~~a~ 504 (717)
|++||+||+||||.||+|+.++++++.+ + ||+|+||+|+| +.++++.|..||+||+|+||||+++||.|++.+.
T Consensus 193 LaaGN~VVlKPs~~tp~t~~~l~~l~~e----aGlP~gv~~vv~g~~~~~g~~L~~~p~v~~V~FTGS~~~G~~i~~~aa 268 (504)
T 3ek1_A 193 LAAGCTMIVRPADLTPLTALALGVLAEK----AGIPAGVLQIVTGKAREIGAELTSNDTVRKLSFTGSTEVGRLLMAQCA 268 (504)
T ss_dssp HHHTCEEEEECCTTSCHHHHHHHHHHHH----TTCCTTTEEECCSCHHHHHHHHHHCTTCCEEEEESCHHHHHHHHHHHG
T ss_pred HHcCCEEEEECCCcChHHHHHHHHHHHH----hCCCcccEEEEeCCCHHHHHHHHhCCCcCEEEEECCHHHHHHHHHhhh
Confidence 9999999999999999999999999987 7 99999999995 5678888889999999999999999999998873
Q ss_pred ---CCEEEecCCcceEEEcCCCCHHHHHHHHHhhccCCCc-cccccceEEEcCcccChhhHHHHHHHHHHcCc-------
Q 005041 505 ---IPVLGHADGICHVYVDKSANLDVAKNIVIDAKIDYPA-ACNAMETLLVHKDLACNGALNELVVELQHEGV------- 573 (717)
Q Consensus 505 ---~p~~lElGGk~p~iV~~dADl~~A~~~i~~~~~~n~g-~C~a~~rv~V~~~i~d~~f~~~l~~~~~~~~~------- 573 (717)
||+++|||||||+||++|||+|.|++.+++++|.|+| +|+|++|+|||+++| |+|+++|+++++++.+
T Consensus 269 ~~lk~v~lELGGk~p~IV~~dADl~~Aa~~i~~~~f~n~GQ~C~a~~rvlV~~~i~-d~f~~~l~~~~~~~~~G~p~~~~ 347 (504)
T 3ek1_A 269 PTIKRISLELGGNAPFIVFDDADLDAAVDGAMVSKYRNAGQTCVCANRIYVQRGVY-DKFAEKLAAKVKELKVGNGTEPG 347 (504)
T ss_dssp GGTCEEEEECCCCEEEEECTTSCHHHHHHHHHHHHHGGGGCSTTSEEEEEEEHHHH-HHHHHHHHHHHHTCCBSCTTSTT
T ss_pred hhcCCeEecCCCCCeeEEcCCCCHHHHHHHHHHHHHhcCCCCCCCCCEEEEehhHH-HHHHHHHHHHHhhcccCCCcccc
Confidence 9999999999999999999999999999999999987 999999999999999 8999999999987521
Q ss_pred ---------------------------eE-ecCccccccc--c-C-----CCCccccccccCceEEEEEeCCHHHHHHHH
Q 005041 574 ---------------------------GL-FGGPRASKLL--Q-I-----PETRLFHHEYNSMVCTVEIVDDVRAAIDHI 617 (717)
Q Consensus 574 ---------------------------~~-~g~~~~~~~~--p-i-----~~~~~~~eE~FGPVl~v~~~~~~deAi~~a 617 (717)
++ .|+.+..++| | | ++|++++||+||||++|++|+|+||||+++
T Consensus 348 ~~~Gpli~~~~~~~v~~~i~~a~~~Ga~v~~gG~~~~g~~~~PTvl~~v~~~~~i~~eEiFGPVl~v~~~~~~deAi~~a 427 (504)
T 3ek1_A 348 VVIGPMIEEKAITKVKAHIEDAVSKGAKLITGGKELGGLFFEPGILTGVTSDMLVAKEETFGPLAPLFAFDTEEEVIAQA 427 (504)
T ss_dssp CCBCCCSSHHHHHHHHHHHHHHHHTTCEEEECCCEEETTEECCEEEEEECTTSGGGTSCCCSSEEEEEEECCHHHHHHHH
T ss_pred CccccccCHHHHHHHHHHHHHHHHCCCEEEeCCccCCCceECCeEEecCCCcChhhcccccCcEEEEEEeCCHHHHHHHH
Confidence 12 2333222333 5 3 468999999999999999999999999999
Q ss_pred HhcCCCceeEEEecCHHHHHHHHhcCCeeeEEEcCCCCCCCCCccCCccccccccCcccccccchhhcccEEEEEEecCc
Q 005041 618 HQHGSAHTDCIVAEDQKVAETFLCQVDSAAVFHNASTRFCDGARFGLGAEVGISTSRIHARGPVGVEGLLTTRWILRGNG 697 (717)
Q Consensus 618 N~~~~GL~a~I~t~d~~~a~~~~~~l~~G~v~iN~~~~~~~~~pfG~g~~~G~~~~~~~~~g~~g~~~ft~~k~v~~~~~ 697 (717)
|+++|||++||||+|.++++++++++++|+|+||++....+.+||||.++||+| +++|++|+++||+.|+|+++.+
T Consensus 428 N~~~~GL~a~v~t~d~~~a~~~a~~l~aG~V~vN~~~~~~~~~PfGG~k~SG~G----r~~G~~gl~~~t~~K~v~~~~g 503 (504)
T 3ek1_A 428 NDTIFGLAAYFYTENFSRAIRVSEALEYGMVGHNTGLISNEVAPFGGVKQSGLG----REGSKYGIEEYLETKYICSAYK 503 (504)
T ss_dssp HCSSCCSEEEEECCBHHHHHHHHHHSCCSEEEESCSCCCCSSSCBCCSGGGEES----CBSTTTSGGGGEEEEEEEEECC
T ss_pred hCCCCCeEEEEEcCCHHHHHHHHHhCCcCeEEECCCCCCCCCCCcCCcCcCcCC----CCCcHHHHHHhhceEEEEEecC
Confidence 999999999999999999999999999999999998767788999999999997 3579999999999999998765
Q ss_pred e
Q 005041 698 H 698 (717)
Q Consensus 698 ~ 698 (717)
+
T Consensus 504 ~ 504 (504)
T 3ek1_A 504 R 504 (504)
T ss_dssp C
T ss_pred C
Confidence 3
No 7
>3ifg_A Succinate-semialdehyde dehydrogenase (NADP+); niaid,.infectious disease, ssgcid, seattle structural genomi for infectious disease; 2.70A {Burkholderia pseudomallei} PDB: 3ifh_Q
Probab=100.00 E-value=4.5e-80 Score=694.37 Aligned_cols=397 Identities=15% Similarity=0.154 Sum_probs=348.7
Q ss_pred HHHhcCCcceEEEecCCcccccHhhHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHhh
Q 005041 270 IKVLEGKRVGTLFHRDAHLWVKQVGAREMAVAARESSRRLQALQSQDRRKILLDVADALEANESLIKVENEADVAAAQEA 349 (717)
Q Consensus 270 ~~~~tg~~iGT~i~a~~~~~~~~~~v~~av~~A~~A~~~w~~~~~~~R~~~L~~~a~~l~~~~~el~~~~~~d~~~~~~~ 349 (717)
.+|.+++.++++..++ .+|+++|+++|++||+.|++++.++|.++|++++++|++|+++|++++++|++++..
T Consensus 33 ~~P~tg~~i~~~~~~~------~~dv~~av~aA~~A~~~w~~~~~~~R~~~L~~~a~~l~~~~~ela~~~~~e~Gk~~~- 105 (484)
T 3ifg_A 33 FDPATGESLGTVPKMG------AAETARAIEAAQAAWAGWRMKTAKERAAILRRWFDLVIANSDDLALILTTEQGKPLA- 105 (484)
T ss_dssp ECTTTCCEEEEEECBC------HHHHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHCCCHH-
T ss_pred ECCCCCCEEEEEcCCC------HHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHH-
Confidence 4578999999998888 899999999999999999999999999999999999999999999999888765421
Q ss_pred chhHHHHHHhhcChhHHHHHHHHHHHHhccccc-ccccccccccCCCceEEEeecceeEEEEEcCC-Cch-hHHHHHHHH
Q 005041 350 GYAKSLVSRLALKPGKISSLAKSIRILADMEEP-IGQILKRTELADGLILEKTSCPLGVLLIVFES-RPD-ALVQIASLA 426 (717)
Q Consensus 350 g~~~a~~~~~~~~~~~i~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~PlGVV~~I~p~-~P~-~~~~~~~~A 426 (717)
++ ..|+..+++.+++++...+. .+...+. ...+...+++|+|+|||++|+|| ||. +.+++++||
T Consensus 106 ---~a--------~~ev~~~~~~l~~~a~~~~~~~g~~~~~--~~~~~~~~~~~~P~GVv~~I~PwN~P~~~~~~~~a~A 172 (484)
T 3ifg_A 106 ---EA--------KGEIAYAASFIEWFAEEGKRVAGDTLPT--PDANKRIVVVKEPIGVCAAITPWNFPAAMIARKVGPA 172 (484)
T ss_dssp ---HH--------HHHHHHHHHHHHHHHHHHTTCCEEEECC--SSTTEEEEEEEEECSSEEEECCSSSTTHHHHHHHHHH
T ss_pred ---HH--------HHHHHHHHHHHHHHHHHHHhhcCccccc--cCCCceeEEEecCCcEEEEECCCcChHHHHHHHHHHH
Confidence 22 24788889999998876543 2333221 11356678899999999999998 685 678999999
Q ss_pred HHhCCEEEEeCCcchHHHHHHHHHHHHHhcccc-cCcCceEEecC-CChhhhhhcCCCCccEEEeecCHHHHHHHHhhc-
Q 005041 427 IRSGNGLLLKGGKEAMRSNAILHKVITSAIPDT-VGEKLIGLVTS-REEIPDLLKLDDVIDLVIPRGSNKLVSQIKEST- 503 (717)
Q Consensus 427 LaaGN~vVlKps~~tp~t~~~l~~~~~~al~~a-lP~gvv~vv~~-~~~~~~~l~~~~~v~~v~fTGs~~~g~~i~~~a- 503 (717)
|++||+||+||||.||+|+.++++++.+ + +|+|+||+|+| +.++++.|..||+||+|+||||+++||.|++.+
T Consensus 173 LaaGN~VVlKps~~tp~t~~~l~~l~~~----aGlP~gv~~vv~g~~~~~g~~L~~~p~v~~v~FTGS~~~G~~i~~~aa 248 (484)
T 3ifg_A 173 LAAGCPIVVKPAESTPFSALAMAFLAER----AGVPKGVLSVVIGDPKAIGTEITSNPIVRKLSFTGSTAVGRLLMAQSA 248 (484)
T ss_dssp HHHTCCEEEECCTTSCHHHHHHHHHHHH----HTCCTTSEEECCBCHHHHHHHHHHCTTCCEEEEESCHHHHHHHHHHTG
T ss_pred HHcCCEEEEECCCCCcHHHHHHHHHHHH----hCCCcccEEEEeCCCHHHHHHHHhCCCcCEEEEECCHHHHHHHHHHhh
Confidence 9999999999999999999999999987 7 99999999996 567888888999999999999999999999887
Q ss_pred --CCCEEEecCCcceEEEcCCCCHHHHHHHHHhhccCCCc-cccccceEEEcCcccChhhHHHHHHHHHHcCc-------
Q 005041 504 --KIPVLGHADGICHVYVDKSANLDVAKNIVIDAKIDYPA-ACNAMETLLVHKDLACNGALNELVVELQHEGV------- 573 (717)
Q Consensus 504 --~~p~~lElGGk~p~iV~~dADl~~A~~~i~~~~~~n~g-~C~a~~rv~V~~~i~d~~f~~~l~~~~~~~~~------- 573 (717)
.||+++|||||||+||++|||+|.|++.+++++|.|+| +|+|++|+|||+++| |+|+++|+++++++.+
T Consensus 249 ~~~k~v~lElGGk~p~iV~~dADl~~Aa~~i~~~~~~n~GQ~C~a~~rvlV~~~i~-d~f~~~l~~~~~~~~~G~p~~~~ 327 (484)
T 3ifg_A 249 PTVKKLTLELGGNAPFIVFDDADLDAAVEGAIASKYRNNGQTCVCTNRFFVHERVY-DAFADKLAAAVSKLKVGRGTESG 327 (484)
T ss_dssp GGTCEEEEECCCCCEEEECTTSCHHHHHHHHHHHHHGGGGCSTTCCCEEEEEGGGH-HHHHHHHHHHHHTCCBSCTTSTT
T ss_pred ccCCceEEecCCCCeEEECCCCCHHHHHHHHHHHHHhcCCCcccCCCeEEEcHHHH-HHHHHHHHHHHHhccCCCCCCCC
Confidence 49999999999999999999999999999999999987 999999999999999 8999999999887531
Q ss_pred ---------------------------eE-ecCccc--cccc--c-C-----CCCccccccccCceEEEEEeCCHHHHHH
Q 005041 574 ---------------------------GL-FGGPRA--SKLL--Q-I-----PETRLFHHEYNSMVCTVEIVDDVRAAID 615 (717)
Q Consensus 574 ---------------------------~~-~g~~~~--~~~~--p-i-----~~~~~~~eE~FGPVl~v~~~~~~deAi~ 615 (717)
++ .|+... .++| | | ++|++++||+||||++|++|+|+||||+
T Consensus 328 ~~~Gpli~~~~~~~v~~~i~~a~~~Ga~v~~gG~~~~~~g~~~~PTvl~~v~~~~~i~~eEiFGPVl~v~~~~~~deAi~ 407 (484)
T 3ifg_A 328 ATLGPLINEAAVKKVESHIADALAKGASLMTGGKRHALGHGFFEPTVLTGVKPDMDVAKEETFGPLAPLFRFASEEELVR 407 (484)
T ss_dssp CCBCCCSSHHHHHHHHHHHHHHHHTTCEEEECCSBCTTCTTCBCCEEEEEECTTSGGGTSCCCSSEEEEEEECCHHHHHH
T ss_pred CCCCCCcCHHHHHHHHHHHHHHHHCCCEEEECCCccCCCCceEcCEEEecCCCCChhhCCeeeCcEEEEEEeCCHHHHHH
Confidence 12 244321 2333 5 3 4689999999999999999999999999
Q ss_pred HHHhcCCCceeEEEecCHHHHHHHHhcCCeeeEEEcCCCCCCCCCccCCccccccccCcccccccchhhcccEEEEEEec
Q 005041 616 HIHQHGSAHTDCIVAEDQKVAETFLCQVDSAAVFHNASTRFCDGARFGLGAEVGISTSRIHARGPVGVEGLLTTRWILRG 695 (717)
Q Consensus 616 ~aN~~~~GL~a~I~t~d~~~a~~~~~~l~~G~v~iN~~~~~~~~~pfG~g~~~G~~~~~~~~~g~~g~~~ft~~k~v~~~ 695 (717)
++|+++|||++||||+|.++++++++++++|+|+||++....+.+||||.++||+| +++|++|+++||+.|+|+++
T Consensus 408 ~aN~~~~GL~a~v~t~d~~~a~~~~~~l~aG~v~iN~~~~~~~~~PfGG~k~SG~G----r~~g~~gl~~~~~~k~v~~~ 483 (484)
T 3ifg_A 408 LANDTEFGLAAYLYSRDIGRVWRVAEALEYGMVGINTGLISNEVAPFGGVKQSGLG----REGSHYGIDDYVVIKYLCVA 483 (484)
T ss_dssp HHHCSSEESEEEEECCBHHHHHHHHHHCCCSEEEESCSCCCCSSSCBCCEETTEEC----CBSTTTTTGGGEEEEEEEEE
T ss_pred HHhCCCCCceEEEECCCHHHHHHHHHhCCcceEEEcCCCCCCCCCCcCCcCcCcCC----CCchHHHHHHhhceEEEEEe
Confidence 99999999999999999999999999999999999997766788999999999996 35799999999999999864
No 8
>3rh9_A Succinate-semialdehyde dehydrogenase (NAD(P)(+)); structural genomics, PSI-biology, NEW YORK structural genomi research consortium; 2.63A {Marinobacter aquaeolei}
Probab=100.00 E-value=5.1e-80 Score=696.34 Aligned_cols=412 Identities=16% Similarity=0.159 Sum_probs=348.0
Q ss_pred HHHhcCCcceEEEecCCcccccHhhHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHhh
Q 005041 270 IKVLEGKRVGTLFHRDAHLWVKQVGAREMAVAARESSRRLQALQSQDRRKILLDVADALEANESLIKVENEADVAAAQEA 349 (717)
Q Consensus 270 ~~~~tg~~iGT~i~a~~~~~~~~~~v~~av~~A~~A~~~w~~~~~~~R~~~L~~~a~~l~~~~~el~~~~~~d~~~~~~~ 349 (717)
.+|.+|+.++++..++ .+|+++++++|++||+.|++++.++|.++|++++++|++|+++|++++++|++++..
T Consensus 32 ~~P~tg~~i~~v~~~~------~~dv~~av~aA~~A~~~w~~~~~~~R~~~L~~~a~~l~~~~~ela~~~~~e~Gk~~~- 104 (506)
T 3rh9_A 32 YNPATGSVIAKVPSMP------EEDVVAAVEAGQSALRLTNPWPIETRRKWLEDIRDGLKENREEIGRILCMEHGKPWK- 104 (506)
T ss_dssp ECTTTCCEEEEEECCC------HHHHHHHHHHHHHHCCSSSCCCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHCCCHH-
T ss_pred ECCCCCCEEEEEcCCC------HHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhCCCHH-
Confidence 4578999999998888 899999999999999999999999999999999999999999999999888765432
Q ss_pred chhHHHHHHhhcChhHHHHHHHHHHHHhcccccc-cccccccccCCCceEEEee-cceeEEEEEcCC-Cch-hHHHHHHH
Q 005041 350 GYAKSLVSRLALKPGKISSLAKSIRILADMEEPI-GQILKRTELADGLILEKTS-CPLGVLLIVFES-RPD-ALVQIASL 425 (717)
Q Consensus 350 g~~~a~~~~~~~~~~~i~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~-~PlGVV~~I~p~-~P~-~~~~~~~~ 425 (717)
++ ..|+..+++.++++++..+.. +...+. ..+...++++ +|+|||++|+|| ||. +.+++++|
T Consensus 105 ---ea--------~~ev~~~~~~l~~~a~~~~~~~~~~~~~---~~~~~~~~~~~~P~GVV~~I~PwN~P~~~~~~~~a~ 170 (506)
T 3rh9_A 105 ---EA--------QGEVDYAAGFFDYCAKHISALDSHTIPE---KPKDCTWTVHYRPVGVTGLIVPWNFPIGMIAKKLSA 170 (506)
T ss_dssp ---HH--------HHHHHHHHHHHHHHHHHGGGGCCEECSC---CGGGCEEEEEEEECCSEEEECCSSSTTHHHHHHHHH
T ss_pred ---HH--------HHHHHHHHHHHHHHHHHHHHhcCccccc---CCCceeeEeecccceEEEEECCCchHHHHHHHHHHH
Confidence 22 236777788888887655433 332221 1345677888 999999999998 684 67899999
Q ss_pred HHHhCCEEEEeCCcchHHHHHHHHHHHHHhcccc-cCcCceEEecC-CChhhhhhcCCCCccEEEeecCHHHHHHHHhhc
Q 005041 426 AIRSGNGLLLKGGKEAMRSNAILHKVITSAIPDT-VGEKLIGLVTS-REEIPDLLKLDDVIDLVIPRGSNKLVSQIKEST 503 (717)
Q Consensus 426 ALaaGN~vVlKps~~tp~t~~~l~~~~~~al~~a-lP~gvv~vv~~-~~~~~~~l~~~~~v~~v~fTGs~~~g~~i~~~a 503 (717)
||++||+||+||||.||+|+.++++++.+ + ||+|+||+|+| +.++++.|..||+||+|+||||+++||.|++.+
T Consensus 171 ALaaGN~VVlKps~~tp~t~~~l~~l~~e----aGlP~gvv~vv~g~~~~~g~~L~~~p~vd~I~FTGS~~vG~~i~~~a 246 (506)
T 3rh9_A 171 ALAAGCPSVIKPASETPLTMIAFFSVMDK----LDLPDGMVNLVMGKASVIGKVLCEHKDVPMLSFTGSTEVGRKLIVDT 246 (506)
T ss_dssp HHHHTCCEEEECCTTSCHHHHHHHHHHTT----TTCCTTSEEECCSCHHHHHHHHHHCTTCCEEEEESCHHHHHHHHHHT
T ss_pred HHHcCCEEEEEcCCccHHHHHHHHHHHHH----hCcChhhEEEEeCCChHHHHHHHhCCCCCEEEEECCHHHHHHHHHHh
Confidence 99999999999999999999999999986 8 99999999996 567788888899999999999999999999887
Q ss_pred ---CCCEEEecCCcceEEEcCCCCHHHHHHHHHhhccCCCc-cccccceEEEcCcccChhhHHHHHHHHHHcC-------
Q 005041 504 ---KIPVLGHADGICHVYVDKSANLDVAKNIVIDAKIDYPA-ACNAMETLLVHKDLACNGALNELVVELQHEG------- 572 (717)
Q Consensus 504 ---~~p~~lElGGk~p~iV~~dADl~~A~~~i~~~~~~n~g-~C~a~~rv~V~~~i~d~~f~~~l~~~~~~~~------- 572 (717)
.||+++|||||||+||++|||+|.|++.+++|+|.|+| +|+|++|+|||+++| |+|+++|+++++++.
T Consensus 247 a~~l~~v~lElGGk~p~iV~~dADl~~Aa~~i~~~~~~n~GQ~C~a~~rvlV~~~i~-d~f~~~l~~~~~~~~~G~p~~~ 325 (506)
T 3rh9_A 247 AEQVKKLALELGGNAPFIVFDDADLEAAADNLIANKFRGGGQTCVCANRIFVHEKVA-DAFGQKLAERVNKMTVGDGMND 325 (506)
T ss_dssp TTTTCEEEEECCCCCEEEECTTSCHHHHHHHHHHHHHGGGGCSSSSCCEEEEETTTH-HHHHHHHHHHHHHCCBSCTTST
T ss_pred hhcCCceEEecCCCCceEECCCCCHHHHHHHHHHHHHHhCCCCcccCcEEEEcHHHH-HHHHHHHHHHHHhccCCCCccc
Confidence 39999999999999999999999999999999999987 999999999999999 899999999998752
Q ss_pred ---------------------------ceE-ecCccc---cccc--c-C-----CCCccccccccCceEEEEEeCCHHHH
Q 005041 573 ---------------------------VGL-FGGPRA---SKLL--Q-I-----PETRLFHHEYNSMVCTVEIVDDVRAA 613 (717)
Q Consensus 573 ---------------------------~~~-~g~~~~---~~~~--p-i-----~~~~~~~eE~FGPVl~v~~~~~~deA 613 (717)
+++ .|+.+. .++| | | ++|++++||+||||++|++|+|+|||
T Consensus 326 ~~~~Gpli~~~~~~rv~~~i~~a~~~Ga~v~~gG~~~~~~~g~~~~PTvl~~v~~~~~i~~eEiFGPVl~v~~~~~~deA 405 (506)
T 3rh9_A 326 GIDIGPLINKQGFDKVKRHLQDALDKGASLVAGKQPAELGDGLFFPPTVVQGVDREMCCYQEETFGPLVPMALFRTEEEV 405 (506)
T ss_dssp TCSBCCCSCHHHHHHHHHHHHHHHHTTCEEEESCCGGGCCSSSCCCCEEEECCCTTSHHHHSCCCSSEEEEEEECCHHHH
T ss_pred CCcccccCCHHHHHHHHHHHHHHHHCCCEEEecCCcCCCCCCcEECCeEEccCCCCChhhcccccCcEEEEEEeCCHHHH
Confidence 122 244321 2333 5 2 46899999999999999999999999
Q ss_pred HHHHHhcCCCceeEEEecCHHHHHHHHhcCCeeeEEEcCCCCCCCCCccCCccccccccCcccccccchhhcccEEEEEE
Q 005041 614 IDHIHQHGSAHTDCIVAEDQKVAETFLCQVDSAAVFHNASTRFCDGARFGLGAEVGISTSRIHARGPVGVEGLLTTRWIL 693 (717)
Q Consensus 614 i~~aN~~~~GL~a~I~t~d~~~a~~~~~~l~~G~v~iN~~~~~~~~~pfG~g~~~G~~~~~~~~~g~~g~~~ft~~k~v~ 693 (717)
|+++|+++|||++||||+|.++++++++++++|+|+||+++...+.+||||.++||+| +++|++|+++||+.|+|+
T Consensus 406 i~~aN~~~~gLaa~v~t~d~~~a~~~~~~l~aG~V~vN~~~~~~~~~PfGG~k~SG~G----~~~G~~gl~~ft~~K~v~ 481 (506)
T 3rh9_A 406 IDAGNDTEFGLASYVFTADAERAQRVAAGLRFGHVGWNTGTGPTPEAPFGGMKASGIG----REGGLEGLFEFVEAQTVP 481 (506)
T ss_dssp HHHHTCSSCCSEEEEECSCHHHHHHHHHHCCCSEEEESCCCCCCTTSCBCCSGGGEES----CBSHHHHHTTTEEEEEEE
T ss_pred HHHHhCCCCCceEEEEcCCHHHHHHHHHhCCcceEEEcCCCCCCCCCCccCcCcCcCC----cCccHHHHHHhcceEEEE
Confidence 9999999999999999999999999999999999999998877788999999999996 457999999999999999
Q ss_pred ecCcee---ecCCCCceeeec
Q 005041 694 RGNGHV---VDGDQGVVYTHK 711 (717)
Q Consensus 694 ~~~~~~---~~~~~~~~~~~~ 711 (717)
++.++. .++-----|.|.
T Consensus 482 ~~~~~~~~~~~~~~~~~~~~~ 502 (506)
T 3rh9_A 482 RGFAENLYFQSHHHHHHWSHP 502 (506)
T ss_dssp EC-------------------
T ss_pred EcCccceeecccccccccCcc
Confidence 986552 244444445554
No 9
>3prl_A NADP-dependent glyceraldehyde-3-phosphate dehydro; structural genomics, protein structure initiative, dehydroge PSI-biology; 2.00A {Bacillus halodurans} PDB: 3rhh_A*
Probab=100.00 E-value=1.6e-79 Score=692.68 Aligned_cols=414 Identities=21% Similarity=0.217 Sum_probs=346.1
Q ss_pred HHHhcCCcceEEEecCCcccccHhhHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHhh
Q 005041 270 IKVLEGKRVGTLFHRDAHLWVKQVGAREMAVAARESSRRLQALQSQDRRKILLDVADALEANESLIKVENEADVAAAQEA 349 (717)
Q Consensus 270 ~~~~tg~~iGT~i~a~~~~~~~~~~v~~av~~A~~A~~~w~~~~~~~R~~~L~~~a~~l~~~~~el~~~~~~d~~~~~~~ 349 (717)
.+|.+++.++++..++ .+|+++++++|++||+.|+++|.++|.++|++++++|++|+++|++++++|++++..
T Consensus 32 ~nP~tg~~i~~~~~~~------~~dv~~av~aA~~A~~~w~~~~~~~R~~~L~~~a~~l~~~~~ela~~~~~e~Gk~~~- 104 (505)
T 3prl_A 32 SAPASGVALGSIPALS------QEEVNDAIQGAKDAQKIWKIRPIHERVDLLYAWADLLEERKEIIGELIMHEVAKPKK- 104 (505)
T ss_dssp ECTTTCCEEEEEECCC------HHHHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHTCCHH-
T ss_pred ECCCCCCEEEEEcCCC------HHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHH-
Confidence 5688999999998888 899999999999999999999999999999999999999999999999988866532
Q ss_pred chhHHHHHHhhcChhHHHHHHHHHHHHhccccc-ccccccccccCC---CceEEEeecceeEEEEEcCC-Cch-hHHHHH
Q 005041 350 GYAKSLVSRLALKPGKISSLAKSIRILADMEEP-IGQILKRTELAD---GLILEKTSCPLGVLLIVFES-RPD-ALVQIA 423 (717)
Q Consensus 350 g~~~a~~~~~~~~~~~i~~~~~~~~~~~~~~~~-~~~~~~~~~~~~---~~~~~~~~~PlGVV~~I~p~-~P~-~~~~~~ 423 (717)
++ ..|+..+++.++++++..+. .+...+....+. +...+++|+|+|||++|+|| ||. +.++++
T Consensus 105 ---ea--------~~Ev~~~~~~~~~~a~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~P~GVV~~I~PwN~P~~~~~~~~ 173 (505)
T 3prl_A 105 ---SA--------IGEVSRTADIIRHTADEALRLNGETLKGDQFKGGSSKKIALVEREPLGVVLAISPFNYPVNLAAAKI 173 (505)
T ss_dssp ---HH--------HHHHHHHHHHHHHHHHHHHTCCEEEEEGGGSTTTCSSEEEEEEEEECSEEEEEECSSSTTHHHHHHH
T ss_pred ---HH--------HHHHHHHHHHHHHHHHHHHHhcCccccccccccccCCceeEEEEcCCcEEEEECCCccHHHHHHHHH
Confidence 22 23566777777777654432 233222111111 45678899999999999998 685 678999
Q ss_pred HHHHHhCCEEEEeCCcchHHHHHHHHHHHHHhcccc-cCcCceEEecC-CChhhhhhcCCCCccEEEeecCHHHHHHHHh
Q 005041 424 SLAIRSGNGLLLKGGKEAMRSNAILHKVITSAIPDT-VGEKLIGLVTS-REEIPDLLKLDDVIDLVIPRGSNKLVSQIKE 501 (717)
Q Consensus 424 ~~ALaaGN~vVlKps~~tp~t~~~l~~~~~~al~~a-lP~gvv~vv~~-~~~~~~~l~~~~~v~~v~fTGs~~~g~~i~~ 501 (717)
+|||++||+||+||||.||+|+.+|++++.+ + ||+|++|+|+| +.++++.|..||+||+|+||||+++||.|++
T Consensus 174 a~ALaaGN~VVlKpse~tp~ta~~l~~ll~e----aGlP~gvv~vv~g~~~~~g~~L~~~p~vd~I~FTGS~~~G~~i~~ 249 (505)
T 3prl_A 174 APALVTGNTVVFKPATQGSLSGIKMVEALAD----AGAPEGIIQVVTGRGSVIGDHLVEHPGIDMITFTGGTTTGERISE 249 (505)
T ss_dssp HHHHHTTCEEEEEECSTTHHHHHHHHHHHHH----TTCCTTSEEECCCCHHHHHHHHHTCTTCCEEEEESCHHHHHHHHH
T ss_pred HHHHHcCCEEEEECCCCChHHHHHHHHHHHH----hCcCcCeEEEEeCCCHHHHHHHHhCCCCCEEEEeCCHHHHHHHHH
Confidence 9999999999999999999999999999987 7 99999999997 5678888989999999999999999999999
Q ss_pred hcC-CCEEEecCCcceEEEcCCCCHHHHHHHHHhhccCCCc-cccccceEEEcCcccChhhHHHHHHHHHHcC-------
Q 005041 502 STK-IPVLGHADGICHVYVDKSANLDVAKNIVIDAKIDYPA-ACNAMETLLVHKDLACNGALNELVVELQHEG------- 572 (717)
Q Consensus 502 ~a~-~p~~lElGGk~p~iV~~dADl~~A~~~i~~~~~~n~g-~C~a~~rv~V~~~i~d~~f~~~l~~~~~~~~------- 572 (717)
.+. ||+++|||||||+||++|||+|.|++.+++|+|.|+| +|+|++|+|||+++| |+|+++|+++++++.
T Consensus 250 ~aal~~v~lELGGk~p~iV~~dADl~~Aa~~i~~~~~~n~GQ~C~a~~rvlV~~~i~-d~f~~~l~~~~~~~~~g~p~~~ 328 (505)
T 3prl_A 250 KAKMIPVVLELGGKDPAIVLDDADLKLTASQIVSGAFSYSGQRCTAIKRVFVQDSVA-DQLVANIKELVEQLTVGSPEDD 328 (505)
T ss_dssp HCCSSCEEEECCCCEEEEECTTCCHHHHHHHHHHHHHGGGGCCSSSEEEEEEEHHHH-HHHHHHHHHHHHHCCBSCTTTT
T ss_pred HccCCcEEEECCCCCCCccCCCCCHHHHHHHHHHHHHhcCCCccccCceEEEeHHHH-HHHHHHHHHHHHhcccCCCCCc
Confidence 886 9999999999999999999999999999999999987 999999999999999 899999999988752
Q ss_pred --------------------------ceE-ecCccccccc--c-C-----CCCccccccccCceEEEEEeCCHHHHHHHH
Q 005041 573 --------------------------VGL-FGGPRASKLL--Q-I-----PETRLFHHEYNSMVCTVEIVDDVRAAIDHI 617 (717)
Q Consensus 573 --------------------------~~~-~g~~~~~~~~--p-i-----~~~~~~~eE~FGPVl~v~~~~~~deAi~~a 617 (717)
+++ .|+.. .++| | | ++|++++||+||||++|++|+|+||||+++
T Consensus 329 ~~~gpli~~~~~~rv~~~i~~a~~~Ga~v~~gG~~-~g~~~~PTvl~~v~~~~~i~~eEiFGPVl~V~~~~~~deAi~~a 407 (505)
T 3prl_A 329 ADITPVIDEKSAAFIQGLIDDALENGATLLSGNKR-QGNLLSPTLLDDVTPAMRVAWEEPFGPVLPIIRVKDANEAISLS 407 (505)
T ss_dssp CSBCCCSCHHHHHHHHHHHHHHHHTTCEEEECCCE-ETTEECCEEEESCCTTSGGGTSCCCSSEEEEEEESSHHHHHHHH
T ss_pred CcCCcccCHHHHHHHHHHHHHHHHCCCEEEecCCC-CCceeCCeEeecCCCCChhhcCCccCcEEEEEEeCCHHHHHHHH
Confidence 122 23332 2333 5 2 468999999999999999999999999999
Q ss_pred HhcCCCceeEEEecCHHHHHHHHhcCCeeeEEEcCCCC-CCCCCccCCccccccccCcccccccchhhcccEEEEEEecC
Q 005041 618 HQHGSAHTDCIVAEDQKVAETFLCQVDSAAVFHNASTR-FCDGARFGLGAEVGISTSRIHARGPVGVEGLLTTRWILRGN 696 (717)
Q Consensus 618 N~~~~GL~a~I~t~d~~~a~~~~~~l~~G~v~iN~~~~-~~~~~pfG~g~~~G~~~~~~~~~g~~g~~~ft~~k~v~~~~ 696 (717)
|+++|||++||||+|.++++++++++++|+|+||+++. ..+.+||||.+.||+| +++|.+|+++||+.|+|+++.
T Consensus 408 N~~~~gL~a~v~t~d~~~a~~~~~~l~aG~V~iN~~~~~~~~~~PFGG~k~SG~G----r~~g~~~~~~f~~~k~v~~~~ 483 (505)
T 3prl_A 408 NQSDYGLQASIFTKDTDRAINIGKHLEVGTVHINAKTERGPDHFPFLGVKKSGLG----VQGIKPSLLSMTRERVTVLNL 483 (505)
T ss_dssp HTSSEESEEEEECSCHHHHHHHHHTSCSSEEEESSCCCSCSTTSCBCCEETTEES----CBSHHHHHHHTEEEEEEEEEC
T ss_pred hCCCCCeEEEEEcCCHHHHHHHHHHCCeeEEEEcCCCCCCCCCCCcCCcCcCCCC----cCccHHHHHHhhceEEEEEeC
Confidence 99999999999999999999999999999999999865 4577899999999996 357999999999999998875
Q ss_pred ce---eecCCCCceeeec
Q 005041 697 GH---VVDGDQGVVYTHK 711 (717)
Q Consensus 697 ~~---~~~~~~~~~~~~~ 711 (717)
+. ..++-----|.|.
T Consensus 484 ~~~~~~~~~~~~~~~~~~ 501 (505)
T 3prl_A 484 AENLYFQSHHHHHHWSHP 501 (505)
T ss_dssp ------------------
T ss_pred CCcccCCccccccccCcc
Confidence 32 2233333445553
No 10
>3ros_A NAD-dependent aldehyde dehydrogenase; nysgrc, PSI-biology, structural genomics, NEW YORK structura genomics research consortium; 1.88A {Lactobacillus acidophilus}
Probab=100.00 E-value=1.3e-79 Score=689.95 Aligned_cols=396 Identities=17% Similarity=0.163 Sum_probs=340.9
Q ss_pred HHhcCCcceEEEecCCcccccHhhHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHhhc
Q 005041 271 KVLEGKRVGTLFHRDAHLWVKQVGAREMAVAARESSRRLQALQSQDRRKILLDVADALEANESLIKVENEADVAAAQEAG 350 (717)
Q Consensus 271 ~~~tg~~iGT~i~a~~~~~~~~~~v~~av~~A~~A~~~w~~~~~~~R~~~L~~~a~~l~~~~~el~~~~~~d~~~~~~~g 350 (717)
+|.+|+.++++..++ .+|+++++++|++||+.|++++.++|.++|++++++|++|+++|++++++|++++..
T Consensus 10 nP~tg~~i~~~~~~~------~~~v~~av~~A~~A~~~w~~~~~~~R~~~L~~~a~~l~~~~~ela~~~~~e~Gk~~~-- 81 (484)
T 3ros_A 10 NPYTNEAFASYDNPT------SKQIDEAINLAHALYKKWRHEEPASRAEILHDIANALKEHEDELAKMMTLEMGKLLS-- 81 (484)
T ss_dssp ETTTTEEEEECCCCC------HHHHHHHHHHHHHHHHHHTTSCTHHHHHHHHHHHHHHHHTHHHHHHHHHHHHCCCHH--
T ss_pred CCCCCCEEEEECCCC------HHHHHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhCCCHH--
Confidence 478898999888888 899999999999999999999999999999999999999999999999988765432
Q ss_pred hhHHHHHHhhcChhHHHHHHHHHHHHhccccc-ccccccccccCCCceEEEeecceeEEEEEcCC-Cch-hHHHHHHHHH
Q 005041 351 YAKSLVSRLALKPGKISSLAKSIRILADMEEP-IGQILKRTELADGLILEKTSCPLGVLLIVFES-RPD-ALVQIASLAI 427 (717)
Q Consensus 351 ~~~a~~~~~~~~~~~i~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~PlGVV~~I~p~-~P~-~~~~~~~~AL 427 (717)
++. .|+...++.+++++...+. .+...+. ..+...+++|+|+|||++|+|| ||. +.+++++|||
T Consensus 82 --ea~--------~ev~~~~~~~~~~a~~~~~~~~~~~~~---~~~~~~~~~~~P~GVV~~I~PwN~P~~~~~~~~a~AL 148 (484)
T 3ros_A 82 --ESK--------EEVELCVSICNYYADHGPEMLKPTKLN---SDLGNAYYLKQSTGVIMACEPWNFPLYQVIRVFAPNF 148 (484)
T ss_dssp --HHH--------HHHHHHHHHHHHHHHHHHHHTSCEEEC---CTTSEEEEEEECCCEEEEECCSSSTTHHHHHHHHHHH
T ss_pred --HHH--------HHHHHHHHHHHHHHHHHHHhcCCeecc---CCCceeEEEecCCceEEEECCCchHHHHHHHHHHHHH
Confidence 222 2444555555555433221 1222111 1345678899999999999998 684 6789999999
Q ss_pred HhCCEEEEeCCcchHHHHHHHHHHHHHhcccc-cCcCceEEecC-CChhhhhhcCCCCccEEEeecCHHHHHHHHhhc--
Q 005041 428 RSGNGLLLKGGKEAMRSNAILHKVITSAIPDT-VGEKLIGLVTS-REEIPDLLKLDDVIDLVIPRGSNKLVSQIKEST-- 503 (717)
Q Consensus 428 aaGN~vVlKps~~tp~t~~~l~~~~~~al~~a-lP~gvv~vv~~-~~~~~~~l~~~~~v~~v~fTGs~~~g~~i~~~a-- 503 (717)
++||+||+||||.||+|+.+|++++.+ + ||+|++|+|+| ++++++ |..||+||+|+||||+++||.|++.+
T Consensus 149 aaGN~VVlKps~~tp~t~~~l~~l~~~----aGlP~gvv~vv~g~~~~~~~-L~~~p~vd~I~fTGS~~~G~~i~~~aa~ 223 (484)
T 3ros_A 149 IVGNPILLKHAHNVPGSAALTAKIIKR----AGAPEGSLINLYPSYDQLAD-IIADPRIQGVALTGSERGGSAVAEAAGK 223 (484)
T ss_dssp HHTCCEEEECCTTCHHHHHHHHHHHHH----HTCCTTSEEEECCCHHHHHH-HHTSTTEEEEEEESCHHHHHHHHHHHHH
T ss_pred HcCCEEEEECCCCChHHHHHHHHHHHH----hCcCcCeEEEEeCChHHHHH-HHhCCCcCEEEEECCHHHHHHHHHHHhc
Confidence 999999999999999999999999987 7 99999999996 566788 77899999999999999999999887
Q ss_pred -CCCEEEecCCcceEEEcCCCCHHHHHHHHHhhccCCCc-cccccceEEEcCcccChhhHHHHHHHHHHcC---------
Q 005041 504 -KIPVLGHADGICHVYVDKSANLDVAKNIVIDAKIDYPA-ACNAMETLLVHKDLACNGALNELVVELQHEG--------- 572 (717)
Q Consensus 504 -~~p~~lElGGk~p~iV~~dADl~~A~~~i~~~~~~n~g-~C~a~~rv~V~~~i~d~~f~~~l~~~~~~~~--------- 572 (717)
.||+++|||||||+||++|||+|.|++.+++|+|.|+| +|+|++|+|||+++| |+|+++|+++++++.
T Consensus 224 ~lk~v~lELGGk~p~iV~~dADl~~Aa~~i~~~~~~n~GQ~C~a~~rvlV~~~i~-d~f~~~l~~~~~~~~~G~p~~~~~ 302 (484)
T 3ros_A 224 NLKKSTMELGGNDAFIVLDDADPQVLRNVLNDARTYNDGQVCTSSKRIIVEKSRY-DEVLHELKNVFSNLKAGDPLEADT 302 (484)
T ss_dssp TTCEEEEECCCCCEEEECTTCCHHHHHHHHTTTTTGGGGCCTTSCCEEEEEGGGH-HHHHHHHHHHHHTCCBSCTTSTTC
T ss_pred cCCceEeecCCCCcceeCCCCCHHHHHHHHHHHHhcCCCCCccCCceEEEcHHHH-HHHHHHHHHHHHhccCCCCCCCCC
Confidence 49999999999999999999999999999999999987 999999999999999 899999999988752
Q ss_pred -------------------------ceE-ecCcc--ccccc--c-C-----CCCccccccccCceEEEEEeCCHHHHHHH
Q 005041 573 -------------------------VGL-FGGPR--ASKLL--Q-I-----PETRLFHHEYNSMVCTVEIVDDVRAAIDH 616 (717)
Q Consensus 573 -------------------------~~~-~g~~~--~~~~~--p-i-----~~~~~~~eE~FGPVl~v~~~~~~deAi~~ 616 (717)
+++ .|+.. ..++| | | ++|++++||+||||++|++|+|+||||++
T Consensus 303 ~~gpli~~~~~~rv~~~i~~a~~~Ga~v~~gG~~~~~~g~~~~PTvl~~v~~~~~i~~eEiFGPVl~v~~~~~~deAi~~ 382 (484)
T 3ros_A 303 TLPPMNSEKAKEKLEAQVKEAIDAGAKVFYQYPEIDSKGAFFRPTILTDIAKDNPVFDKEVFGPIAEVFVVEDDNAAIQL 382 (484)
T ss_dssp CBCCCSCHHHHHHHHHHHHHHHHTTCEEEEECCCCCCSSCCCCCEEEECCCTTSTTTTSCCCSSEEEEEEESSHHHHHHH
T ss_pred ccCCCCCHHHHHHHHHHHHHHHHcCCeEEecCCcCCCCCceeCCeEeecCCCCCcccccccccceEEEEEcCCHHHHHHH
Confidence 122 23332 12333 5 2 36899999999999999999999999999
Q ss_pred HHhcCCCceeEEEecCHHHHHHHHhcCCeeeEEEcCCCCCCCCCccCCccccccccCcccccccchhhcccEEEEEEecC
Q 005041 617 IHQHGSAHTDCIVAEDQKVAETFLCQVDSAAVFHNASTRFCDGARFGLGAEVGISTSRIHARGPVGVEGLLTTRWILRGN 696 (717)
Q Consensus 617 aN~~~~GL~a~I~t~d~~~a~~~~~~l~~G~v~iN~~~~~~~~~pfG~g~~~G~~~~~~~~~g~~g~~~ft~~k~v~~~~ 696 (717)
+|+++|||++||||+|.++++++++++++|+|+||++....+.+||||.++||+| +++|++|+++||+.|+|+++.
T Consensus 383 aN~~~~GL~a~v~t~d~~~a~~~~~~l~aG~V~vN~~~~~~~~~PfGG~k~SG~G----r~~G~~gl~~ft~~K~v~~~~ 458 (484)
T 3ros_A 383 ANDSSYGLGSSVIGSDIDRAKKVSAQIETGMTVINGRWITSGELPFGGIKKSGYG----RELSGLGLMAFVNEHLVIDVT 458 (484)
T ss_dssp HHSSSCCSCEEEECSCHHHHHHHHHHSCSSCCEETSCCCCCTTSCBCCSGGGEES----CBSHHHHHTTTCEEEEEEECG
T ss_pred HhCCCCCcEEEEECCCHHHHHHHHHhCccceEEECCCCCCCCCCCcCCcCcccCC----cCchHHHHHHhheeEEEEECC
Confidence 9999999999999999999999999999999999998777888999999999996 467999999999999999875
Q ss_pred c
Q 005041 697 G 697 (717)
Q Consensus 697 ~ 697 (717)
.
T Consensus 459 ~ 459 (484)
T 3ros_A 459 K 459 (484)
T ss_dssp G
T ss_pred C
Confidence 4
No 11
>4f3x_A Putative aldehyde dehydrogenase; structural genomics, protein structure initiative, nysgrc, P biology; HET: MSE NAD; 2.01A {Sinorhizobium meliloti} PDB: 4dal_A*
Probab=100.00 E-value=2.3e-79 Score=690.31 Aligned_cols=399 Identities=14% Similarity=0.139 Sum_probs=348.8
Q ss_pred HHHhcCCcceEEEecCCcccccHhhHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHhh
Q 005041 270 IKVLEGKRVGTLFHRDAHLWVKQVGAREMAVAARESSRRLQALQSQDRRKILLDVADALEANESLIKVENEADVAAAQEA 349 (717)
Q Consensus 270 ~~~~tg~~iGT~i~a~~~~~~~~~~v~~av~~A~~A~~~w~~~~~~~R~~~L~~~a~~l~~~~~el~~~~~~d~~~~~~~ 349 (717)
.+|.+++.++++..++ .+|+++|+++|++||+.|+++|.++|.++|++++++|++|+++|++++++|+|++.
T Consensus 45 ~nP~tg~~i~~v~~~~------~~dv~~Av~aA~~A~~~w~~~~~~~R~~~L~~~a~~l~~~~~ela~~~~~e~Gk~~-- 116 (498)
T 4f3x_A 45 LNPRTGAGIIDLAEAS------HAQIDAAVDAAERAFVGWSQTTPAERSNALLKIADAIEKEADEFAALEALNCGKPI-- 116 (498)
T ss_dssp ECTTTCCEEEEEECCC------HHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHCCCH--
T ss_pred ECCCCCCEEEEEcCCC------HHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhCCCH--
Confidence 5688999999998888 89999999999999999999999999999999999999999999999988876542
Q ss_pred chhHHHHHHhhcChhHHHHHHHHHHHHhcccccc-cccccccccCCCceEEEeecceeEEEEEcCC-Cch-hHHHHHHHH
Q 005041 350 GYAKSLVSRLALKPGKISSLAKSIRILADMEEPI-GQILKRTELADGLILEKTSCPLGVLLIVFES-RPD-ALVQIASLA 426 (717)
Q Consensus 350 g~~~a~~~~~~~~~~~i~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~PlGVV~~I~p~-~P~-~~~~~~~~A 426 (717)
.+++ ..|+...++.++++++..+.. +...+.. ..+...+++|+|+|||++|+|| ||. +.+++++||
T Consensus 117 --~ea~-------~~ev~~~~~~l~~~a~~~~~~~~~~~~~~--~~~~~~~~~~~P~GVv~~I~PwN~P~~~~~~~~a~A 185 (498)
T 4f3x_A 117 --NAVK-------NDELPAIIDCWRFFAGAVRNLHAPAAGEY--LPGHTSMIRRDPIGIVGSIAPWNYPLMMMAWKLAPA 185 (498)
T ss_dssp --HHHH-------HTHHHHHHHHHHHHHHHTTCCEEECBEEE--ETTEEEEEEEEECCEEEEECCSSSHHHHHHHHHHHH
T ss_pred --HHHh-------HHHHHHHHHHHHHHHHHHHHhcCccccCC--cccccceEEEcCcceEEEECCCchHHHHHHHHHHHH
Confidence 1221 236778888888888665432 3322211 2356678899999999999998 785 677999999
Q ss_pred HHhCCEEEEeCCcchHHHHHHHHHHHHHhcccccCcCceEEecC-CChhhhhhcCCCCccEEEeecCHHHHHHHHhhc--
Q 005041 427 IRSGNGLLLKGGKEAMRSNAILHKVITSAIPDTVGEKLIGLVTS-REEIPDLLKLDDVIDLVIPRGSNKLVSQIKEST-- 503 (717)
Q Consensus 427 LaaGN~vVlKps~~tp~t~~~l~~~~~~al~~alP~gvv~vv~~-~~~~~~~l~~~~~v~~v~fTGs~~~g~~i~~~a-- 503 (717)
|++||+||+||||.||+|+.++++++.+ +||+|+||+|+| ++++++.|..||+||+|+||||+++||.|++.+
T Consensus 186 LaaGNtVVlKPs~~tp~t~~~l~~l~~e----alP~gv~nvv~g~~~~~g~~L~~~p~v~~V~FTGS~~~G~~i~~~aa~ 261 (498)
T 4f3x_A 186 IGGGNTVVFKPSEQTPLTALKLARLIAD----ILPEGVVNVITGRGETVGNALINHPKVGMVSITGDIATGKKVLAAAAK 261 (498)
T ss_dssp HHTTCEEEEECCTTCCHHHHHHHHHHHT----TSCTTSEEECCCCTTTHHHHHHTCTTCCEEEEESCHHHHHHHHHHHHT
T ss_pred HHcCCeEEEECCcccHHHHHHHHHHHHH----hCCcCeEEEEeCCchHHHHHHHhCCCcCEEEEECCHHHHHHHHHHHHh
Confidence 9999999999999999999999999987 499999999996 667888888999999999999999999999877
Q ss_pred -CCCEEEecCCcceEEEcCCCCHHHHHHHHHhhccCCCc-cccccceEEEcCcccChhhHHHHHHHHHHcC---------
Q 005041 504 -KIPVLGHADGICHVYVDKSANLDVAKNIVIDAKIDYPA-ACNAMETLLVHKDLACNGALNELVVELQHEG--------- 572 (717)
Q Consensus 504 -~~p~~lElGGk~p~iV~~dADl~~A~~~i~~~~~~n~g-~C~a~~rv~V~~~i~d~~f~~~l~~~~~~~~--------- 572 (717)
.||+++|||||||+||++|||+|+|++.+++++|.|+| +|+|++|+|||+++| |+|+++|+++++++.
T Consensus 262 ~~k~v~lElGGk~p~IV~~dADl~~Aa~~i~~~~~~n~GQ~C~a~~rvlV~~~i~-d~f~~~l~~~~~~~~vG~p~d~~~ 340 (498)
T 4f3x_A 262 TVKRTHLELGGKAPVIVYGDADLEAVVNGIRTFGYYNAGQDCTAACRIYAEAGIY-EKLVADLTSAVSTIRYNLDDDTEN 340 (498)
T ss_dssp TTCEEEEECCCCEEEEECTTSCHHHHHHHHHHHTTGGGGCSTTCEEEEEEETTTH-HHHHHHHHHHHTTCCCSCSSGGGC
T ss_pred hCCceeecCCCCCcEEECCCCCHHHHHHHHHHHHHhcCCCCccCCceEEecHHHH-HHHHHHHHHHHHhcccCCCccccC
Confidence 39999999999999999999999999999999999987 999999999999999 899999999887542
Q ss_pred -------------------------c-eEe-cCccc--cccc--c-C-----CCCccccccccCceEEEEEeCCHHHHHH
Q 005041 573 -------------------------V-GLF-GGPRA--SKLL--Q-I-----PETRLFHHEYNSMVCTVEIVDDVRAAID 615 (717)
Q Consensus 573 -------------------------~-~~~-g~~~~--~~~~--p-i-----~~~~~~~eE~FGPVl~v~~~~~~deAi~ 615 (717)
+ ++. |+... .++| | | ++|++++||+||||++|++|+|+||||+
T Consensus 341 ~~Gpli~~~~~~~v~~~i~~a~~~Ga~~v~~gG~~~~~~g~~~~PTvl~~v~~~~~i~~eEiFGPVl~v~~~~~~deAi~ 420 (498)
T 4f3x_A 341 EIGPLISRRQRDRVASFVERAADQKHIEITTGGRTGSDEGFFFQPTVVAGATQEDEIVRREVFGPVVSVTRFTGKDDAVA 420 (498)
T ss_dssp SSCCCSCHHHHHHHHHHHHHHHHSTTCEEEECCSBCCSSSCCBCCEEEESCCTTSHHHHSCCCSSEEEEEEECTTSCHHH
T ss_pred ccccCcCHHHHHHHHHHHHHHHHCCCCEEEECCccCCCCCcEECCEEeecCCCCChhhCCceeCcEEEEEEeCCHHHHHH
Confidence 2 332 44321 2333 5 2 3689999999999999999999999999
Q ss_pred HHHhcCCCceeEEEecCHHHHHHHHhcCCeeeEEEcCCCCCCCCCccCCccccccccCcccccccchhhcccEEEEEEec
Q 005041 616 HIHQHGSAHTDCIVAEDQKVAETFLCQVDSAAVFHNASTRFCDGARFGLGAEVGISTSRIHARGPVGVEGLLTTRWILRG 695 (717)
Q Consensus 616 ~aN~~~~GL~a~I~t~d~~~a~~~~~~l~~G~v~iN~~~~~~~~~pfG~g~~~G~~~~~~~~~g~~g~~~ft~~k~v~~~ 695 (717)
++|+++|||++||||+|.++++++++++++|+|+||++....+.+||||.+.||+| +++|++|+++||+.|+|+++
T Consensus 421 ~aN~~~~GL~a~v~t~d~~~a~~~a~~l~aG~V~vN~~~~~~~~~PfGG~k~SG~G----r~~G~~~l~~~t~~k~v~~~ 496 (498)
T 4f3x_A 421 WANDSDYGLASSVWTKDISKAMRAASRLQYGCTWINTHFMLTNEMPHGGIKQSGYG----KDMSVYALEDYTAVRHIMIN 496 (498)
T ss_dssp HHHSSSCCSEEEEECSBHHHHHHHHHHCCSSEEEESCCSCCCTTSCBCCSGGGEEC----CBSHHHHHHHTEEEEEEEEE
T ss_pred HHhcCCCCceEEEECCCHHHHHHHHHhCCcceEEEcCCCCCCCCCCcCCcCcCCcC----ccchHHHHHHhhceEEEEEe
Confidence 99999999999999999999999999999999999998877788999999999986 35799999999999999876
Q ss_pred C
Q 005041 696 N 696 (717)
Q Consensus 696 ~ 696 (717)
.
T Consensus 497 ~ 497 (498)
T 4f3x_A 497 H 497 (498)
T ss_dssp C
T ss_pred C
Confidence 4
No 12
>3r31_A BADH, betaine aldehyde dehydrogenase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.15A {Agrobacterium tumefaciens}
Probab=100.00 E-value=2.5e-79 Score=692.43 Aligned_cols=398 Identities=14% Similarity=0.150 Sum_probs=345.1
Q ss_pred HHHhcCCcceEEEecCCcccccHhhHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHhh
Q 005041 270 IKVLEGKRVGTLFHRDAHLWVKQVGAREMAVAARESSRRLQALQSQDRRKILLDVADALEANESLIKVENEADVAAAQEA 349 (717)
Q Consensus 270 ~~~~tg~~iGT~i~a~~~~~~~~~~v~~av~~A~~A~~~w~~~~~~~R~~~L~~~a~~l~~~~~el~~~~~~d~~~~~~~ 349 (717)
.+|.+|+.++++..++ .+|+++++++|++||+.|++++.++|.++|++++++|++|+++|++++++|++++..
T Consensus 35 ~nP~tg~~i~~~~~~~------~~dv~~av~aA~~A~~~w~~~~~~~R~~~L~~~a~~l~~~~~ela~~~~~e~Gk~~~- 107 (517)
T 3r31_A 35 IFPATGEMIAKLHAAT------PAIVERAIASAKRAQKEWAAMSPMARGRILKRAADIMRERNDALSTLETLDTGKPIQ- 107 (517)
T ss_dssp ECTTTCCEEEEEECCC------HHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHCCCHH-
T ss_pred ECCCCCCEEEEECCCC------HHHHHHHHHHHHHHHHHhhhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHH-
Confidence 4578999999998888 899999999999999999999999999999999999999999999999888765421
Q ss_pred chhHHHHHHhhcChhHHHHHHHHHHHHhccccc----c-cccccccccCCCceEEEeecceeEEEEEcCC-Cch-hHHHH
Q 005041 350 GYAKSLVSRLALKPGKISSLAKSIRILADMEEP----I-GQILKRTELADGLILEKTSCPLGVLLIVFES-RPD-ALVQI 422 (717)
Q Consensus 350 g~~~a~~~~~~~~~~~i~~~~~~~~~~~~~~~~----~-~~~~~~~~~~~~~~~~~~~~PlGVV~~I~p~-~P~-~~~~~ 422 (717)
++ |+..+++.+++++...+. . ++..+. ..+. .+++|+|+|||++|+|| ||. +.+++
T Consensus 108 ---ea----------ev~~~~~~~~~~a~~~~~~~~~~~g~~~~~---~~~~-~~~~~~P~GVV~~I~PwN~P~~~~~~~ 170 (517)
T 3r31_A 108 ---ET----------IVADPTSGADAFEFFGGIAPSALNGDYIPL---GGDF-AYTKRVPLGVCVGIGAWNYPQQIACWK 170 (517)
T ss_dssp ---HH----------HHHSHHHHHHHHHHHHHHHHHHTCCCEEEC---SSSE-EEEEEEECSEEEEECCSSSHHHHHHHH
T ss_pred ---HH----------HHHHHHHHHHHHHHHhhhccccccCccccc---CCCc-ceEEEcCccEEEEECCCcchHHHHHHH
Confidence 21 455556666666544332 2 332221 2344 78899999999999998 685 67899
Q ss_pred HHHHHHhCCEEEEeCCcchHHHHHHHHHHHHHhcccc-cCcCceEEecCCChhhhhhcCCCCccEEEeecCHHHHHHHHh
Q 005041 423 ASLAIRSGNGLLLKGGKEAMRSNAILHKVITSAIPDT-VGEKLIGLVTSREEIPDLLKLDDVIDLVIPRGSNKLVSQIKE 501 (717)
Q Consensus 423 ~~~ALaaGN~vVlKps~~tp~t~~~l~~~~~~al~~a-lP~gvv~vv~~~~~~~~~l~~~~~v~~v~fTGs~~~g~~i~~ 501 (717)
++|||++||+||+||||.||+|+.++++++.+ + ||+|+||+|+|+.++++.|..||+||+|+||||+++||.|++
T Consensus 171 ~a~ALaaGN~VVlKps~~tp~t~~~l~~ll~e----aGlP~gvv~vv~g~~~~g~~L~~~p~vd~I~FTGS~~~G~~i~~ 246 (517)
T 3r31_A 171 AAPALVAGNAMVFKPSENTPLGALKIAEILIE----AGLPKGLFNVIQGDRDTGPLLVNHPDVAKVSLTGSVPTGRKVAA 246 (517)
T ss_dssp HHHHHHTTCEEEEECCTTSCSHHHHHHHHHHH----TTCCTTSEEECCCCTTHHHHHHTCTTEEEEEEESCHHHHHHHHH
T ss_pred HHHHHHcCCEEEEEcCcccHHHHHHHHHHHHH----hCcCcccEEEEECCHHHHHHHHhCCCcCEEeccCCHHHHHHHHH
Confidence 99999999999999999999999999999987 7 999999999986678888889999999999999999999998
Q ss_pred hc---CCCEEEecCCcceEEEcCCCCHHHHHHHHHhhccCCCc-cccccceEEEcCcccChhhHHHHHHHHHHcC-----
Q 005041 502 ST---KIPVLGHADGICHVYVDKSANLDVAKNIVIDAKIDYPA-ACNAMETLLVHKDLACNGALNELVVELQHEG----- 572 (717)
Q Consensus 502 ~a---~~p~~lElGGk~p~iV~~dADl~~A~~~i~~~~~~n~g-~C~a~~rv~V~~~i~d~~f~~~l~~~~~~~~----- 572 (717)
.+ .||+++|||||||+||++|||+|.|++.+++|+|.|+| +|+|++|+|||+++| |+|+++|+++++++.
T Consensus 247 ~aa~~lk~v~lElGGk~p~IV~~dADl~~Aa~~i~~~~f~n~GQ~C~a~~rvlV~~~i~-d~f~~~l~~~~~~~~~G~p~ 325 (517)
T 3r31_A 247 AAAGHLKHVTMELGGKSPMIVFDDADIESAVGGAMLGNFYSSGQVCSNGTRVFVQKKAK-ARFLENLKRRTEAMILGDPL 325 (517)
T ss_dssp HHHHTTCEEEEECCCCEEEEECTTSCHHHHHHHHHHHHTSCCHHHHTTCEEEEEEGGGH-HHHHHHHHHHHHHCCBCCTT
T ss_pred HhhcCCCcEEEEcCCcCeEEEecCCCHHHHHHHHHHHHhcCCCceeccCceEEEeHHHH-HHHHHHHHHHHHhccCCCCC
Confidence 87 49999999999999999999999999999999999997 999999999999999 899999999988752
Q ss_pred -----------------------------ceE-ecCc-c----ccccc--c-C-----CCCccccccccCceEEEEEeCC
Q 005041 573 -----------------------------VGL-FGGP-R----ASKLL--Q-I-----PETRLFHHEYNSMVCTVEIVDD 609 (717)
Q Consensus 573 -----------------------------~~~-~g~~-~----~~~~~--p-i-----~~~~~~~eE~FGPVl~v~~~~~ 609 (717)
+++ .|+. . ..++| | | ++|++++||+||||++|++|+|
T Consensus 326 ~~~~~~Gpli~~~~~~rv~~~i~~a~~~Ga~v~~gG~~~~~~~~~g~~~~PTvl~~v~~~~~i~~eEiFGPVl~v~~~~~ 405 (517)
T 3r31_A 326 DYATHLGPLVSKAQQEKVLSYIEKGKAEGATLITGGGIPNNVAGEGAYVQPTVFADVTDDMTIAREEIFGPVMCVLDFDD 405 (517)
T ss_dssp STTCSBCCBSCHHHHHHHHHHHHHHHHHTCEEEECCSCCSSCCSSSBCCCCEEEEEECTTSHHHHSCCSSSEEEEEEECC
T ss_pred CcCCcccCCcCHHHHHHHHHHHHHHHhCCCEEEECCccCcccCCCCceECCEEEecCCCCCccccceeeccEEEEEEeCC
Confidence 122 2442 0 12333 5 3 4689999999999999999999
Q ss_pred HHHHHHHHHhcCCCceeEEEecCHHHHHHHHhcCCeeeEEEcCCCCCCCCCccCCccccccccCcccccccchhhcccEE
Q 005041 610 VRAAIDHIHQHGSAHTDCIVAEDQKVAETFLCQVDSAAVFHNASTRFCDGARFGLGAEVGISTSRIHARGPVGVEGLLTT 689 (717)
Q Consensus 610 ~deAi~~aN~~~~GL~a~I~t~d~~~a~~~~~~l~~G~v~iN~~~~~~~~~pfG~g~~~G~~~~~~~~~g~~g~~~ft~~ 689 (717)
+||||+++|+++|||++||||+|.++++++++++++|+|+||++....+.+||||.++||+| +++|++|+++||+.
T Consensus 406 ~deAi~~aN~~~~gLaa~v~t~d~~~a~~~~~~l~aG~V~iN~~~~~~~~~PfGG~k~SG~G----r~~G~~gl~~ft~~ 481 (517)
T 3r31_A 406 EDEVLARANATEFGLAGGVFTADLARAHRVVDGLEAGTLWINTYNLCPVEIPFGGSKQSGFG----RENSAAALEHYSEL 481 (517)
T ss_dssp HHHHHHHHHCSSEESEEEEECSCHHHHHHHHHHSCCSEEEESSCCCCCTTSCBCCEETTEEC----CBSTGGGGGGSEEE
T ss_pred HHHHHHHHhCCCCCeeEEEEeCCHHHHHHHHHHCCcceEEECCCCCCCCCCCcCCcCcCCCC----cCchHHHHHHhhce
Confidence 99999999999999999999999999999999999999999998777888999999999986 35799999999999
Q ss_pred EEEEecCceee
Q 005041 690 RWILRGNGHVV 700 (717)
Q Consensus 690 k~v~~~~~~~~ 700 (717)
|+|+++.++.+
T Consensus 482 K~v~~~~~~~~ 492 (517)
T 3r31_A 482 KTVYVSTGKVD 492 (517)
T ss_dssp EEEEECCC---
T ss_pred EEEEEcCCCCC
Confidence 99999876544
No 13
>1a4s_A ALDH, betaine aldehyde dehydrogenase; oxidoreductase, aldehyde oxidation; 2.10A {Gadus callarias} SCOP: c.82.1.1 PDB: 1bpw_A*
Probab=100.00 E-value=6.1e-79 Score=688.29 Aligned_cols=398 Identities=15% Similarity=0.159 Sum_probs=349.4
Q ss_pred HHHhcCCcceEEEecCCcccccHhhHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHhh
Q 005041 270 IKVLEGKRVGTLFHRDAHLWVKQVGAREMAVAARESSRRLQALQSQDRRKILLDVADALEANESLIKVENEADVAAAQEA 349 (717)
Q Consensus 270 ~~~~tg~~iGT~i~a~~~~~~~~~~v~~av~~A~~A~~~w~~~~~~~R~~~L~~~a~~l~~~~~el~~~~~~d~~~~~~~ 349 (717)
.+|.+|+.++++..++ .+|+++++++|++||+.|++++.++|.++|++++++|++|+++|++++++|++++.
T Consensus 41 ~nP~tg~~i~~~~~~~------~~dv~~av~aA~~A~~~w~~~~~~~R~~~L~~~a~~l~~~~~ela~~~~~e~Gk~~-- 112 (503)
T 1a4s_A 41 FEPATGRVLCQMVPCG------AEEVDQAVQSAQAAYLKWSKMAGIERSRVMLEAARIIRERRDNIAKLEVINNGKTI-- 112 (503)
T ss_dssp ECTTTCCEEEEECCCC------HHHHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHCCCH--
T ss_pred ECCCCCCEEEEEeCCC------HHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCH--
Confidence 5688999999988888 89999999999999999999999999999999999999999999999988875542
Q ss_pred chhHHHHHHhhcChhHHHHHHHHHHHHhcccccc-cccccccccCCCceEEEeecceeEEEEEcCC-Cch-hHHHHHHHH
Q 005041 350 GYAKSLVSRLALKPGKISSLAKSIRILADMEEPI-GQILKRTELADGLILEKTSCPLGVLLIVFES-RPD-ALVQIASLA 426 (717)
Q Consensus 350 g~~~a~~~~~~~~~~~i~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~PlGVV~~I~p~-~P~-~~~~~~~~A 426 (717)
.++ ..|+..+++.++++++..+.. ++..+.. .+...+++|+|+|||++|+|| ||. +.+++++||
T Consensus 113 --~ea--------~~ev~~~~~~~~~~a~~~~~~~g~~~~~~---~~~~~~~~~~P~GVv~~I~PwN~P~~~~~~~~a~A 179 (503)
T 1a4s_A 113 --TEA--------EYDIDAAWQCIEYYAGLAPTLSGQHIQLP---GGAFAYTRREPLGVCAGILAWNYPFMIAAWKCAPA 179 (503)
T ss_dssp --HHH--------HHHHHHHHHHHHHHHHHGGGCCEEEEECG---GGCEEEEEEEECSEEEEECCSSSHHHHHHHHHHHH
T ss_pred --HHH--------HHHHHHHHHHHHHHHHHHHHhcCCcccCC---CCceeEEEEecCceEEEECCCcchHHHHHHHHHHH
Confidence 122 246778888888888665432 4332211 234568899999999999998 685 677999999
Q ss_pred HHhCCEEEEeCCcchHHHHHHHHHHHHHhcccc-cCcCceEEecC-CChhhhhhcCCCCccEEEeecCHHHHHHHHhhc-
Q 005041 427 IRSGNGLLLKGGKEAMRSNAILHKVITSAIPDT-VGEKLIGLVTS-REEIPDLLKLDDVIDLVIPRGSNKLVSQIKEST- 503 (717)
Q Consensus 427 LaaGN~vVlKps~~tp~t~~~l~~~~~~al~~a-lP~gvv~vv~~-~~~~~~~l~~~~~v~~v~fTGs~~~g~~i~~~a- 503 (717)
|++||+||+||||.||+|+.++++++++ + ||+|++|+|+| + ++++.|..||+||+|+||||+++||.|++.+
T Consensus 180 LaaGN~VVlKps~~tp~ta~~l~~l~~~----aGlP~gvv~vv~g~~-~~g~~L~~~p~v~~V~FTGS~~~G~~i~~~aa 254 (503)
T 1a4s_A 180 LACGNAVVFKPSPMTPVTGVILAEIFHE----AGVPVGLVNVVQGGA-ETGSLLCHHPNVAKVSFTGSVPTGKKVMEMSA 254 (503)
T ss_dssp HHTTCEEEEECCTTSCHHHHHHHHHHHH----TTCCTTSEEECCCSH-HHHHHHHHCTTCCEEEEESCHHHHHHHHHHHH
T ss_pred HHcCCEEEEECCCCChHHHHHHHHHHHH----hCCCcCeEEEEecCc-hHHHHHHhCCCcCEEEEeCCHHHHHHHHHHhh
Confidence 9999999999999999999999999997 7 99999999996 6 7888888999999999999999999999877
Q ss_pred --CCCEEEecCCcceEEEcCCCCHHHHHHHHHhhccCCCc-cccccceEEEcCcccChhhHHHHHHHHHHcC--------
Q 005041 504 --KIPVLGHADGICHVYVDKSANLDVAKNIVIDAKIDYPA-ACNAMETLLVHKDLACNGALNELVVELQHEG-------- 572 (717)
Q Consensus 504 --~~p~~lElGGk~p~iV~~dADl~~A~~~i~~~~~~n~g-~C~a~~rv~V~~~i~d~~f~~~l~~~~~~~~-------- 572 (717)
.||+++|||||||+||++|||+|.|++.+++++|.|+| +|+|++|+|||+++| |+|+++|+++++++.
T Consensus 255 ~~~~~v~lELGGk~p~IV~~dADl~~Aa~~i~~~~~~n~GQ~C~a~~rvlV~~~i~-d~f~~~l~~~~~~~~~G~p~~~~ 333 (503)
T 1a4s_A 255 KTVKHVTLELGGKSPLLIFKDCELENAVRGALMANFLTQGQVCTNGTRVFVQREIM-PQFLEEVVKRTKAIVVGDPLLTE 333 (503)
T ss_dssp TTTCEEEEECCCCCEEEECTTSCHHHHHHHHHHTTCGGGGCCTTCCCEEEEEGGGH-HHHHHHHHHHHHTCCBSCTTSTT
T ss_pred hcCCceEEecCCcCeEEECCCCCHHHHHHHHHHHHHhcCCCCCcCCcEEEEehHHH-HHHHHHHHHHHHhcCCCCCcccC
Confidence 59999999999999999999999999999999999987 999999999999999 899999999988652
Q ss_pred --------------------------ceE-ecCccc--------cccc--c-C-----CCCccccccccCceEEEEEeCC
Q 005041 573 --------------------------VGL-FGGPRA--------SKLL--Q-I-----PETRLFHHEYNSMVCTVEIVDD 609 (717)
Q Consensus 573 --------------------------~~~-~g~~~~--------~~~~--p-i-----~~~~~~~eE~FGPVl~v~~~~~ 609 (717)
+++ .|+... .++| | | ++|++++||+||||++|++|+|
T Consensus 334 ~~~gpli~~~~~~rv~~~i~~a~~~Ga~~~~gG~~~~~~~~~~~~g~~~~PTvl~~v~~~~~i~~eEiFGPVl~v~~~~~ 413 (503)
T 1a4s_A 334 TRMGGLISKPQLDKVLGFVAQAKKEGARVLCGGEPLTPSDPKLKNGYFMSPCVLDNCRDDMTCVKEEIFGPVMSVLPFDT 413 (503)
T ss_dssp CCBCCCSCHHHHHHHHHHHHHHHHHTCEEEECCSBCCCSSGGGTTSCCBCCEEEESCCTTSHHHHSCCCSSEEEEEEECC
T ss_pred CccCCCcCHHHHHHHHHHHHHHHHCCCEEEeCCcccccccccccCCceeCCEEEecCCCCCHHHhccccCceEEEEecCC
Confidence 223 244332 2433 5 3 3689999999999999999999
Q ss_pred HHHHHHHHHhcCCCceeEEEecCHHHHHHHHhcCCeeeEEEcCCCCCCCCCccCCccccccccCcccccccchhhcccEE
Q 005041 610 VRAAIDHIHQHGSAHTDCIVAEDQKVAETFLCQVDSAAVFHNASTRFCDGARFGLGAEVGISTSRIHARGPVGVEGLLTT 689 (717)
Q Consensus 610 ~deAi~~aN~~~~GL~a~I~t~d~~~a~~~~~~l~~G~v~iN~~~~~~~~~pfG~g~~~G~~~~~~~~~g~~g~~~ft~~ 689 (717)
+||||+++|+++|||++||||+|.++++++++++++|+|+||++....+.+||||.++||+| +++|++|+++||+.
T Consensus 414 ~deAi~~aN~~~~gL~a~v~t~d~~~a~~~~~~l~aG~V~vN~~~~~~~~~PfGG~k~SG~G----~~~G~~~l~~f~~~ 489 (503)
T 1a4s_A 414 EEEVLQRANNTTFGLASGVFTRDISRAHRVAANLEAGTCYINTYSISPVEVPFGGYKMSGFG----RENGQATVDYYSQL 489 (503)
T ss_dssp HHHHHHHHHCSSCCSEEEEECSBHHHHHHHHHHSCSSEEEESCCCCCCTTSCBCCSGGGEEC----CBSTTGGGGGSEEE
T ss_pred HHHHHHHHhcCCCCceEEEECCCHHHHHHHHHHCceeEEEECCCCCCCCCCCCCCcCCCCCC----ccchHHHHHHhcCc
Confidence 99999999999999999999999999999999999999999998777778999999999996 45799999999999
Q ss_pred EEEEecCce
Q 005041 690 RWILRGNGH 698 (717)
Q Consensus 690 k~v~~~~~~ 698 (717)
|+|.++.++
T Consensus 490 k~v~~~~~~ 498 (503)
T 1a4s_A 490 KTVIVEMGD 498 (503)
T ss_dssp EEEEECCSC
T ss_pred eEEEEccCC
Confidence 999987654
No 14
>3ed6_A Betaine aldehyde dehydrogenase; structural genomics, infecti deseases, NAD, oxidoreductase, PSI; 1.70A {Staphylococcus aureus} PDB: 3fg0_A*
Probab=100.00 E-value=2.4e-79 Score=692.99 Aligned_cols=400 Identities=17% Similarity=0.209 Sum_probs=351.2
Q ss_pred HHHHhcCCcceEEEecCCcccccHhhHHHHHHHHHHHH--HHHhcCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHH
Q 005041 269 IIKVLEGKRVGTLFHRDAHLWVKQVGAREMAVAARESS--RRLQALQSQDRRKILLDVADALEANESLIKVENEADVAAA 346 (717)
Q Consensus 269 l~~~~tg~~iGT~i~a~~~~~~~~~~v~~av~~A~~A~--~~w~~~~~~~R~~~L~~~a~~l~~~~~el~~~~~~d~~~~ 346 (717)
+.+|.+++.++++..++ .+|+++|+++|++|| +.|++++.++|.++|++++++|++|+++|++++++|+|++
T Consensus 52 v~nP~tg~~i~~v~~~~------~~dv~~Av~aA~~A~~~~~w~~~~~~~R~~~L~~~a~~l~~~~~ela~~~~~e~Gk~ 125 (520)
T 3ed6_A 52 IINPYNQEVIFTVSEGT------KEDAERAILAARRAFESGEWSQETAETRGKKVRAIADKIKEHREALARLETLDTGKT 125 (520)
T ss_dssp EEETTTTEEEEEEECCC------HHHHHHHHHHHHHHHHHTTTTTSCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHCCC
T ss_pred eECCCCCCEEEEEcCCC------HHHHHHHHHHHHHhccccccccCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhCCC
Confidence 36688999999988888 899999999999999 8999999999999999999999999999999998887654
Q ss_pred HhhchhHHHHHHhhcChhHHHHHHHHHHHHhcccccc-cccccccccCCCceEEEeecceeEEEEEcCC-Cch-hHHHHH
Q 005041 347 QEAGYAKSLVSRLALKPGKISSLAKSIRILADMEEPI-GQILKRTELADGLILEKTSCPLGVLLIVFES-RPD-ALVQIA 423 (717)
Q Consensus 347 ~~~g~~~a~~~~~~~~~~~i~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~PlGVV~~I~p~-~P~-~~~~~~ 423 (717)
. .++ ..|+..+++.+++++...+.. +...+. . ..+...+++|+|+|||++|+|| ||. +.++++
T Consensus 126 ~----~ea--------~~ev~~~~~~~~~~a~~~~~~~g~~~~~-~-~~~~~~~~~~~P~GVV~~I~PwN~P~~~~~~~~ 191 (520)
T 3ed6_A 126 L----EES--------YADMDDIHNVFMYFAGLADKDGGEMIDS-P-IPDTESKIVKEPVGVVTQITPWNYPLLQASWKI 191 (520)
T ss_dssp H----HHH--------HHHHHHHHHHHHHHHHHTTSCCEEEECC-S-STTEEEEEEEEECCEEEEECCSSSHHHHHHHHH
T ss_pred H----HHH--------HHHHHHHHHHHHHHHHHHHHhcCeeccc-C-CCCCcccccccCccEEEEECCCccHHHHHHHHH
Confidence 2 122 236888889999988766543 332221 1 1345678899999999999998 785 567999
Q ss_pred HHHHHhCCEEEEeCCcchHHHHHHHHHHHHHhcccc-cCcCceEEecC-CChhhhhhcCCCCccEEEeecCHHHHHHHHh
Q 005041 424 SLAIRSGNGLLLKGGKEAMRSNAILHKVITSAIPDT-VGEKLIGLVTS-REEIPDLLKLDDVIDLVIPRGSNKLVSQIKE 501 (717)
Q Consensus 424 ~~ALaaGN~vVlKps~~tp~t~~~l~~~~~~al~~a-lP~gvv~vv~~-~~~~~~~l~~~~~v~~v~fTGs~~~g~~i~~ 501 (717)
+|||++||+||+||||.||+|+.++++++.+ + ||+|+||+|+| +.++++.|..||+||+|+||||+++||.|++
T Consensus 192 apALaaGNtVVlKPs~~tp~t~~~l~~l~~e----aGlP~gvvnvv~g~~~~~g~~L~~~p~vd~V~FTGS~~vG~~i~~ 267 (520)
T 3ed6_A 192 APALATGCSLVMKPSEITPLTTIRVFELMEE----VGFPKGTINLILGAGSEVGDVMSGHKEVDLVSFTGGIETGKHIMK 267 (520)
T ss_dssp HHHHHHTCEEEEECCTTCCHHHHHHHHHHHH----HCCCTTSEEECCSCCTTHHHHHHHCTTCSEEEEESCHHHHHHHHH
T ss_pred HHHHHcCCEEEEEcCCcchHHHHHHHHHHHH----hCCCCCeEEEEeCCChHHHHHHHhCCCcCEEEEECCHHHHHHHHH
Confidence 9999999999999999999999999999987 7 99999999996 6778888999999999999999999999998
Q ss_pred hc---CCCEEEecCCcceEEEcCCCCHHHHHHHHHhhccCCCc-cccccceEEEcCcccChhhHHHHHHHHHHcCc----
Q 005041 502 ST---KIPVLGHADGICHVYVDKSANLDVAKNIVIDAKIDYPA-ACNAMETLLVHKDLACNGALNELVVELQHEGV---- 573 (717)
Q Consensus 502 ~a---~~p~~lElGGk~p~iV~~dADl~~A~~~i~~~~~~n~g-~C~a~~rv~V~~~i~d~~f~~~l~~~~~~~~~---- 573 (717)
.+ .||++||||||||+||++|||+|.|++.+++++|.|+| +|+|++|+|||+++| |+|+++|+++++++.+
T Consensus 268 ~aa~~l~~v~lELGGk~p~IV~~dADl~~Aa~~i~~~~f~n~GQ~C~a~~rvlV~~~i~-d~f~~~l~~~~~~l~vG~p~ 346 (520)
T 3ed6_A 268 NAANNVTNIALELGGKNPNIIFDDADFELAVDQALNGGYFHAGQVCSAGSRILVQNSIK-DKFEQALIDRVKKIKLGNGF 346 (520)
T ss_dssp HHHTTTCEEEEECCCCCEEEECTTSCHHHHHHHHHHHHHGGGGTSTTCCCEEEEEHHHH-HHHHHHHHHHHTTCCBCCTT
T ss_pred HhhhcCCCEEEEcCCCCeeEECCCCCHHHHHHHHHHHHHhcCCCCcccCceEEEcHHHH-HHHHHHHHHHHHhccCCCCc
Confidence 77 39999999999999999999999999999999999987 999999999999999 8999999999876521
Q ss_pred ------------------------------eE-ecCccc------cccc--c-C-----CCCccccccccCceEEEEEeC
Q 005041 574 ------------------------------GL-FGGPRA------SKLL--Q-I-----PETRLFHHEYNSMVCTVEIVD 608 (717)
Q Consensus 574 ------------------------------~~-~g~~~~------~~~~--p-i-----~~~~~~~eE~FGPVl~v~~~~ 608 (717)
++ .|+.+. .++| | | ++|++++||+||||++|++|+
T Consensus 347 d~~~~~Gpli~~~~~~~v~~~i~~a~~~Ga~v~~gG~~~~~~~~~~g~f~~PTvl~~v~~~~~i~~eEiFGPVl~v~~~~ 426 (520)
T 3ed6_A 347 DADTEMGPVISTEHRNKIESYMDVAKAEGATIAVGGKRPDRDDLKDGLFFEPTVITNCDTSMRIVQEEVFGPVVTVEGFE 426 (520)
T ss_dssp STTCSBCCCSCHHHHHHHHHHHHHHHHTTCEEEECCSCCCCGGGTTTTCCCCEEEESCCTTSHHHHSCCCSSEEEEEEES
T ss_pred cCCCcccccCCHHHHHHHHHHHHHHHhCCCEEEeCCCcCccccCCCCceECCeEEecCCCCCccccCceeCcEEEEEEeC
Confidence 22 244331 2333 5 2 468999999999999999999
Q ss_pred CHHHHHHHHHhcCCCceeEEEecCHHHHHHHHhcCCeeeEEEcCCCCCCCCCccCCccccccccCcccccccchhhcccE
Q 005041 609 DVRAAIDHIHQHGSAHTDCIVAEDQKVAETFLCQVDSAAVFHNASTRFCDGARFGLGAEVGISTSRIHARGPVGVEGLLT 688 (717)
Q Consensus 609 ~~deAi~~aN~~~~GL~a~I~t~d~~~a~~~~~~l~~G~v~iN~~~~~~~~~pfG~g~~~G~~~~~~~~~g~~g~~~ft~ 688 (717)
|+||||+++|+++|||++||||+|.++++++++++++|+|+||+.....+..||||.+.||+| +++|++|+++||+
T Consensus 427 ~~deAi~~aN~~~~GL~a~v~t~d~~~a~~~a~~l~aG~V~iN~~~~~~~~~PfGG~k~SG~G----re~G~~gl~~~t~ 502 (520)
T 3ed6_A 427 TEQEAIQLANDSIYGLAGAVFSKDIGKAQRVANKLKLGTVWINDFHPYFAQAPWGGYKQSGIG----RELGKEGLEEYLV 502 (520)
T ss_dssp SHHHHHHHHTCSSCCSEEEEECSCHHHHHHHHHHSCCSEEEESCSCCCCTTSCBCCSGGGEES----CBSHHHHHHTTEE
T ss_pred CHHHHHHHHhCCCCCcEEEEECCCHHHHHHHHHHCCcceEEECCCCCCCCCCCcCCcCcCcCC----ccchHHHHHHhhc
Confidence 999999999999999999999999999999999999999999998777788999999999996 3579999999999
Q ss_pred EEEEEecCc
Q 005041 689 TRWILRGNG 697 (717)
Q Consensus 689 ~k~v~~~~~ 697 (717)
.|+|+++.+
T Consensus 503 ~k~v~~~~~ 511 (520)
T 3ed6_A 503 SKHILTNTN 511 (520)
T ss_dssp EEEEEEESS
T ss_pred eEEEEEcCC
Confidence 999998764
No 15
>4e4g_A Methylmalonate-semialdehyde dehydrogenase; structural genomics, protein structure INI nysgrc, PSI-biology; 2.90A {Sinorhizobium meliloti}
Probab=100.00 E-value=3.8e-79 Score=691.57 Aligned_cols=401 Identities=15% Similarity=0.167 Sum_probs=347.5
Q ss_pred HHHhcCCcceEEEecCCcccccHhhHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHhh
Q 005041 270 IKVLEGKRVGTLFHRDAHLWVKQVGAREMAVAARESSRRLQALQSQDRRKILLDVADALEANESLIKVENEADVAAAQEA 349 (717)
Q Consensus 270 ~~~~tg~~iGT~i~a~~~~~~~~~~v~~av~~A~~A~~~w~~~~~~~R~~~L~~~a~~l~~~~~el~~~~~~d~~~~~~~ 349 (717)
.+|.+++.++++..++ .+|+++++++|++||+.|++++.++|.++|++++++|++|+++|++++++|++++..
T Consensus 47 ~nP~tg~~i~~~~~~~------~~dv~~av~~A~~A~~~w~~~~~~~R~~~L~~~a~~l~~~~~ela~~~~~e~Gk~~~- 119 (521)
T 4e4g_A 47 FNPATGEVQGTVALAS------DADLAAAVESAKAAQPKWAATNPQRRARVFMKFVQLLNDNMNELAEMLSREHGKTID- 119 (521)
T ss_dssp EETTTTEEEEEEECCC------HHHHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCSCHH-
T ss_pred ECCCCCCEEEEEcCCC------HHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHH-
Confidence 5688999999998888 899999999999999999999999999999999999999999999999888765432
Q ss_pred chhHHHHHHhhcChhHHHHHHHHHHHHhcccccc-cccccccccCCCceEEEeecceeEEEEEcCC-Cch-hHHHHHHHH
Q 005041 350 GYAKSLVSRLALKPGKISSLAKSIRILADMEEPI-GQILKRTELADGLILEKTSCPLGVLLIVFES-RPD-ALVQIASLA 426 (717)
Q Consensus 350 g~~~a~~~~~~~~~~~i~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~PlGVV~~I~p~-~P~-~~~~~~~~A 426 (717)
++ ..|+..+++.++++++..+.. +...+. ...+...+++|+|+|||++|+|| ||. +.+++++||
T Consensus 120 ---ea--------~~Ev~~~~~~l~~~a~~~~~~~~~~~~~--~~~~~~~~~~~~P~GVV~~I~PwN~P~~~~~~~~a~A 186 (521)
T 4e4g_A 120 ---DA--------KGDIVRGLEVCEFVIGIPHLQKSEFTEG--AGPGIDMYSIRQPVGIGAGITPFNFPGMIPMWMFAPA 186 (521)
T ss_dssp ---HH--------HHHHHHHHHHHHHHHTHHHHTCEEEEEE--EETTEEEEEEEEECCEEEEECCSSCTTHHHHHHHHHH
T ss_pred ---HH--------HHHHHHHHHHHHHHHHHHHHhcCccccc--CCCCcceeEEEcCCcEEEEECCCcchHHHHHHHHHHH
Confidence 22 246788888888888654432 222211 12355678899999999999998 685 678999999
Q ss_pred HHhCCEEEEeCCcchHHHHHHHHHHHHHhcccc-cCcCceEEecCCChhhhhhcCCCCccEEEeecCHHHHHHHHhhc--
Q 005041 427 IRSGNGLLLKGGKEAMRSNAILHKVITSAIPDT-VGEKLIGLVTSREEIPDLLKLDDVIDLVIPRGSNKLVSQIKEST-- 503 (717)
Q Consensus 427 LaaGN~vVlKps~~tp~t~~~l~~~~~~al~~a-lP~gvv~vv~~~~~~~~~l~~~~~v~~v~fTGs~~~g~~i~~~a-- 503 (717)
|++||+||+||||.||+|+.++++++.+ + ||+|+||+|+|+.+.++.|..||+||+|+||||+++||.|++.|
T Consensus 187 LaaGN~VVlKpse~tp~t~~~l~~l~~e----aGlP~gvv~vv~g~~~~~~~L~~~p~vd~I~FTGS~~vG~~i~~~aa~ 262 (521)
T 4e4g_A 187 IACGNAFILKPSERDPSVPIRLAELMIE----AGLPAGILNVVNGDKGAVDAILTHPDIAAVSFVGSTPIARYVYGTAAM 262 (521)
T ss_dssp HHTTCEEEEECCTTSTHHHHHHHHHHHH----TTCCTTSEEECCCCHHHHHHHHTCTTCCEEEEESCHHHHHHHHHHHHH
T ss_pred HHcCCEEEEECCCcchHHHHHHHHHHHH----hCCCcCeEEEEeCChHHHHHHHhCCCcCEEEEECCHHHHHHHHHHHhh
Confidence 9999999999999999999999999987 7 99999999997555567788899999999999999999999877
Q ss_pred -CCCEEEecCCcceEEEcCCCCHHHHHHHHHhhccCCCc-cccccceEEEcCc-ccChhhHHHHHHHHHHcCc-------
Q 005041 504 -KIPVLGHADGICHVYVDKSANLDVAKNIVIDAKIDYPA-ACNAMETLLVHKD-LACNGALNELVVELQHEGV------- 573 (717)
Q Consensus 504 -~~p~~lElGGk~p~iV~~dADl~~A~~~i~~~~~~n~g-~C~a~~rv~V~~~-i~d~~f~~~l~~~~~~~~~------- 573 (717)
.||+++|||||||+||++|||+|.|++.+++++|.|+| +|+|++|+|||++ +| |+|+++|+++++++.+
T Consensus 263 ~lkpv~lELGGk~p~IV~~dADl~~Aa~~i~~~~f~n~GQ~C~a~~rvlV~~~~i~-d~f~~~l~~~~~~~~vG~~~~~~ 341 (521)
T 4e4g_A 263 NGKRAQCFGGAKNHMIIMPDADLDQAANALIGAGYGSAGERCMAISVAVPVGEETA-NRLIDKLVPMVESLRIGPYTDEK 341 (521)
T ss_dssp TTCEEEEECCCCEEEEECTTSCHHHHHHHHHHHHHGGGGCCTTSEEEEEEBSHHHH-HHHHHHHHHHHHTCCBCCTTCTT
T ss_pred cCCCeeecCCCCCeEEEcCCCCHHHHHHHHHHHHHhCCCCCcccCeEEEEeCchHH-HHHHHHHHHHHHhccCCCCCCcc
Confidence 49999999999999999999999999999999999986 9999999999999 99 8999999999887531
Q ss_pred ---------------------------eE-ecCcc------ccccc--c-C-----CCCccccccccCceEEEEEeCCHH
Q 005041 574 ---------------------------GL-FGGPR------ASKLL--Q-I-----PETRLFHHEYNSMVCTVEIVDDVR 611 (717)
Q Consensus 574 ---------------------------~~-~g~~~------~~~~~--p-i-----~~~~~~~eE~FGPVl~v~~~~~~d 611 (717)
++ .|+.+ ..++| | | ++|++++||+||||++|++|+|+|
T Consensus 342 ~~~gpli~~~~~~rv~~~i~~a~~~Ga~v~~gG~~~~~~~~~~g~~~~PTvl~~v~~~~~i~~eEiFGPVl~v~~~~~~d 421 (521)
T 4e4g_A 342 ADMGPVVTKEAEQRIRSLIDSGIEQGAKLVVDGRDFKLQGYENGHFIGGCLFDDVTPDMDIYKTEIFGPVLSVVRARNYE 421 (521)
T ss_dssp CSBCCCSCHHHHHHHHHHHHHHHHHTCEEEECCSSCCCTTCTTSCCCCCEEEESCCTTSHHHHSCCCSSEEEECCBSSHH
T ss_pred CccCCCCCHHHHHHHHHHHHHHHHCCCEEEecCcccCCCcCCCCcEECCEEEEcCCCCCHhhcCcccCcEEEEEEeCCHH
Confidence 22 24432 12333 5 2 468999999999999999999999
Q ss_pred HHHHHHHhcCCCceeEEEecCHHHHHHHHhcCCeeeEEEcCCCCCC-CCCccCCccccccccCcccccccchhhcccEEE
Q 005041 612 AAIDHIHQHGSAHTDCIVAEDQKVAETFLCQVDSAAVFHNASTRFC-DGARFGLGAEVGISTSRIHARGPVGVEGLLTTR 690 (717)
Q Consensus 612 eAi~~aN~~~~GL~a~I~t~d~~~a~~~~~~l~~G~v~iN~~~~~~-~~~pfG~g~~~G~~~~~~~~~g~~g~~~ft~~k 690 (717)
|||+++|+++|||++||||+|.++++++++++++|+|+||+++... +.+||||.+.||+| +.+++|++|+++||+.|
T Consensus 422 eAi~~aN~~~~gLaa~v~t~d~~~a~~~~~~l~aG~V~vN~~~~~~~~~~PfGG~k~SG~G--~~~~~G~~gl~~ft~~K 499 (521)
T 4e4g_A 422 EALSLPMKHEYGNGVAIYTRDGDAARDFASRINIGMVGVNVPIPVPLAYHSFGGWKSSSFG--DLNQHGTDSIKFWTRTK 499 (521)
T ss_dssp HHHHHHHHSSEESEEEEECSBHHHHHHHHHHCCCSEEEESCSSCCCCTTSCBCCEETTEES--SCCBSHHHHHHHTEEEE
T ss_pred HHHHHHhcCCCCeEEEEECCCHHHHHHHHHhCCeeeEEECCCCCCCCCCCCcCCcccCCCC--CCccchHHHHHHhheEE
Confidence 9999999999999999999999999999999999999999986543 67899999999986 33467999999999999
Q ss_pred EEEecCc
Q 005041 691 WILRGNG 697 (717)
Q Consensus 691 ~v~~~~~ 697 (717)
+|+++.+
T Consensus 500 ~v~~~~~ 506 (521)
T 4e4g_A 500 TITSRWP 506 (521)
T ss_dssp EEEECCC
T ss_pred EEEEecC
Confidence 9998754
No 16
>3u4j_A NAD-dependent aldehyde dehydrogenase; PSI-biology, nysgrc, structural genomics, NEW YORK structura genomics research consortium, tetramer; 2.00A {Sinorhizobium meliloti}
Probab=100.00 E-value=1e-78 Score=689.13 Aligned_cols=400 Identities=18% Similarity=0.195 Sum_probs=348.4
Q ss_pred HHHhc-CCcceEEEecCCcccccHhhHHHHHHHHHHHH--HHHhcCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHH
Q 005041 270 IKVLE-GKRVGTLFHRDAHLWVKQVGAREMAVAARESS--RRLQALQSQDRRKILLDVADALEANESLIKVENEADVAAA 346 (717)
Q Consensus 270 ~~~~t-g~~iGT~i~a~~~~~~~~~~v~~av~~A~~A~--~~w~~~~~~~R~~~L~~~a~~l~~~~~el~~~~~~d~~~~ 346 (717)
.+|.+ |+.++++..++ .+|+++++++|++|| +.|++++.++|.++|++++++|++|+++|++++++|++++
T Consensus 43 ~nP~t~g~~i~~~~~~~------~~dv~~av~aA~~A~~~~~w~~~~~~~R~~~L~~~a~~l~~~~~ela~~~~~e~Gk~ 116 (528)
T 3u4j_A 43 VSPGHAGEVVGTWPEAS------ADDVRKAVAAARKAFDAGPWPRMSGAERSRLMFKVADLILARQEELALIESLEVGKP 116 (528)
T ss_dssp ECTTSTTCEEEEEECCC------HHHHHHHHHHHHHHHHTSSGGGSCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHCCC
T ss_pred eCCCCCCcEEEEEeCCC------HHHHHHHHHHHHHhccccccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 45788 99999998888 899999999999999 7899999999999999999999999999999998887654
Q ss_pred HhhchhHHHHHHhhcChhHHHHHHHHHHHHhcccccc-cccccccccCCCceEEEeecceeEEEEEcCC-Cch-hHHHHH
Q 005041 347 QEAGYAKSLVSRLALKPGKISSLAKSIRILADMEEPI-GQILKRTELADGLILEKTSCPLGVLLIVFES-RPD-ALVQIA 423 (717)
Q Consensus 347 ~~~g~~~a~~~~~~~~~~~i~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~PlGVV~~I~p~-~P~-~~~~~~ 423 (717)
. .++ ..|+...++.++++++..+.. +...+.. ..+...+++|+|+|||++|+|| ||. +.++++
T Consensus 117 ~----~ea--------~~ev~~~~~~l~~~a~~~~~~~~~~~~~~--~~~~~~~~~~~P~GVV~~I~PwN~P~~~~~~~~ 182 (528)
T 3u4j_A 117 I----AQA--------RGEIGFCADLWSYAAGQARALEGQTHNNI--GDDRLGLVLREPVGVVGIITPWNFPFIIASERV 182 (528)
T ss_dssp H----HHH--------HHHHHHHHHHHHHHHHHHTTCCEEEECCS--CTTEEEEEEEEECCEEEEECCSSSHHHHHHHHH
T ss_pred H----HHH--------HHHHHHHHHHHHHHHHHHHHhcCeeeccC--CCCceeEEEeccceEEEEECCCccHHHHHHHHH
Confidence 2 122 236677777777777554432 3322211 1355678899999999999998 785 678999
Q ss_pred HHHHHhCCEEEEeCCcchHHHHHHHHHHHHHhcccc-cCcCceEEecC-CChhhhhhcCCCCccEEEeecCHHHHHHHHh
Q 005041 424 SLAIRSGNGLLLKGGKEAMRSNAILHKVITSAIPDT-VGEKLIGLVTS-REEIPDLLKLDDVIDLVIPRGSNKLVSQIKE 501 (717)
Q Consensus 424 ~~ALaaGN~vVlKps~~tp~t~~~l~~~~~~al~~a-lP~gvv~vv~~-~~~~~~~l~~~~~v~~v~fTGs~~~g~~i~~ 501 (717)
+|||++||+||+||||.||+|+.++++++.+ + ||+|+||+|+| +.++++.|..||+||+|+||||+++||.|++
T Consensus 183 a~ALaaGN~VVlKps~~tp~t~~~l~~l~~e----aGlP~gvv~vv~g~~~~~g~~L~~~p~vd~I~FTGS~~~G~~i~~ 258 (528)
T 3u4j_A 183 PWAIGSGCTVVLKPSEFTSGTSIRLAELARE----AGIPDGVFNVVTGYGDPAGQVLAEDPNVDMVAFTGSVRVGTKLGE 258 (528)
T ss_dssp HHHHHTTCEEEEECCTTCCHHHHHHHHHHHH----HTCCTTSEEECCCSSTTHHHHHHHCTTCCEEEEESCHHHHHHHHH
T ss_pred HHHHHcCCeEEEEcCCccHHHHHHHHHHHHH----hCCCCCeEEEEeCCcHHHHHHHHhCCCcCEEEEeCCHHHHHHHHH
Confidence 9999999999999999999999999999987 7 99999999996 6678888888999999999999999999998
Q ss_pred hc---CCCEEEecCCcceEEEcCCCCHHHHHHHHHhhccCCCc-cccccceEEEcCcccChhhHHHHHHHHHHcC-----
Q 005041 502 ST---KIPVLGHADGICHVYVDKSANLDVAKNIVIDAKIDYPA-ACNAMETLLVHKDLACNGALNELVVELQHEG----- 572 (717)
Q Consensus 502 ~a---~~p~~lElGGk~p~iV~~dADl~~A~~~i~~~~~~n~g-~C~a~~rv~V~~~i~d~~f~~~l~~~~~~~~----- 572 (717)
.+ .||++||||||||+||++|||+|.|++.+++|+|.|+| +|+|++|+|||+++| |+|+++|+++++++.
T Consensus 259 ~aa~~lk~v~lELGGk~p~iV~~dADl~~Aa~~i~~~~~~n~GQ~C~a~~rvlV~~~i~-d~f~~~l~~~~~~~~~G~p~ 337 (528)
T 3u4j_A 259 IAARTVKRVGLELGGKGPQIVFADADLDAAADGIAYGVYHNAGQCCISGSRLLVQEGIR-DALMERLLDISRKVAFGDPL 337 (528)
T ss_dssp HHHTTTCEEEEECCCCEEEEECTTSCHHHHHHHHHHHHHGGGGCCTTCEEEEEEEGGGH-HHHHHHHHHHHHHCCEECTT
T ss_pred HHHhcCCceEEecCCCCeeEECCCCCHHHHHHHHHHHHhhcCCCCCcCCCEEEEechHH-HHHHHHHHHHHHhhcCCCCC
Confidence 77 49999999999999999999999999999999999987 999999999999999 899999999988752
Q ss_pred -----------------------------ceE-ecCccc---cccc--c-C-----CCCccccccccCceEEEEEeCCHH
Q 005041 573 -----------------------------VGL-FGGPRA---SKLL--Q-I-----PETRLFHHEYNSMVCTVEIVDDVR 611 (717)
Q Consensus 573 -----------------------------~~~-~g~~~~---~~~~--p-i-----~~~~~~~eE~FGPVl~v~~~~~~d 611 (717)
+++ .|+.+. .++| | | ++|++++||+||||++|++|+|+|
T Consensus 338 ~~~~~~Gpli~~~~~~rv~~~i~~a~~~Ga~v~~gG~~~~~~~g~~~~PTvl~~v~~~~~i~~eEiFGPVl~v~~~~~~d 417 (528)
T 3u4j_A 338 NERTKIGAMISEAHAEKVHSYVTAGITSGAELLLGGERIGREAGLYYAPTVFAGVTPDMSIAREEIFGPVLSTLTFKTAD 417 (528)
T ss_dssp STTCSBCCCSCHHHHHHHHHHHHHHHHTTCEEEECCSEECTTTSCEECCEEEESCCTTSHHHHSCCCSSEEEEEEESSHH
T ss_pred CcCCccCCccCHHHHHHHHHHHHHHHHCCCEEEeCCCcCCCCCCcEecceEEecCCCCCccccceeeccEEEEEEeCCHH
Confidence 122 244321 2333 5 2 468999999999999999999999
Q ss_pred HHHHHHHhcCCCceeEEEecCHHHHHHHHhcCCeeeEEEcCCCCCCCCCccCCccccccccCcccccccchhhcccEEEE
Q 005041 612 AAIDHIHQHGSAHTDCIVAEDQKVAETFLCQVDSAAVFHNASTRFCDGARFGLGAEVGISTSRIHARGPVGVEGLLTTRW 691 (717)
Q Consensus 612 eAi~~aN~~~~GL~a~I~t~d~~~a~~~~~~l~~G~v~iN~~~~~~~~~pfG~g~~~G~~~~~~~~~g~~g~~~ft~~k~ 691 (717)
|||+++|+++|||++||||+|.++++++++++++|+|+||++....+.+||||.++||+| +++|++|+++||+.|+
T Consensus 418 eAi~~aN~~~~GL~a~v~t~d~~~a~~~~~~l~aG~V~vN~~~~~~~~~PfGG~k~SG~G----r~~G~~gl~~ft~~K~ 493 (528)
T 3u4j_A 418 EAVALANATEFGLSASVWSTNLETALQTIRRIRAGRCWINSVIDGTPELPIGGYKKSGLG----RELGRYGFDEYSQFKG 493 (528)
T ss_dssp HHHHHHHCSSCCSEEEEECSBHHHHHHHHHHSCCSEEEESCCSCCCTTSCBCCSGGGEES----CBSTTHHHHHTEEEEE
T ss_pred HHHHHHhcCCCCcEEEEEcCCHHHHHHHHHhCCeeEEEECCCCCCCCCCCcCCcCcCCCC----cCchHHHHHHhhceEE
Confidence 999999999999999999999999999999999999999998877888999999999996 3569999999999999
Q ss_pred EEecCce
Q 005041 692 ILRGNGH 698 (717)
Q Consensus 692 v~~~~~~ 698 (717)
|+++.++
T Consensus 494 v~~~~~~ 500 (528)
T 3u4j_A 494 VHVTLGR 500 (528)
T ss_dssp EEEESSC
T ss_pred EEEeCCC
Confidence 9998763
No 17
>3k2w_A Betaine-aldehyde dehydrogenase; structural genomics, PSI-2, protein initiative; 1.90A {Pseudoalteromonas atlantica T6C}
Probab=100.00 E-value=1e-78 Score=686.02 Aligned_cols=399 Identities=16% Similarity=0.189 Sum_probs=349.0
Q ss_pred HHHhcCCcceEEEecCCcccccHhhHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHhh
Q 005041 270 IKVLEGKRVGTLFHRDAHLWVKQVGAREMAVAARESSRRLQALQSQDRRKILLDVADALEANESLIKVENEADVAAAQEA 349 (717)
Q Consensus 270 ~~~~tg~~iGT~i~a~~~~~~~~~~v~~av~~A~~A~~~w~~~~~~~R~~~L~~~a~~l~~~~~el~~~~~~d~~~~~~~ 349 (717)
.+|.+|+.++++..++ .+|+++++++|++||+.|+++|.++|.++|++++++|++|+++|++++++|++++.
T Consensus 33 ~nP~tg~~i~~~~~~~------~~dv~~av~aA~~A~~~w~~~~~~~R~~~L~~~a~~l~~~~~~la~~~~~e~Gk~~-- 104 (497)
T 3k2w_A 33 LSPSTGKVIGEIPAGC------KADAENALEVAQAAQKAWAKLTARTRQNMLRTFANKIRENKHILAPMLVAEQGKLL-- 104 (497)
T ss_dssp ECSSSCSEEEEEECCC------HHHHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHCCCH--
T ss_pred ECCCCCCEEEEEcCCC------HHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCH--
Confidence 4578999999998888 89999999999999999999999999999999999999999999999988876542
Q ss_pred chhHHHHHHhhcChhHHHHHHHHHHHHhcccccc-cccccccccCCCceEEEeecceeEEEEEcCC-Cch-hHHHHHHHH
Q 005041 350 GYAKSLVSRLALKPGKISSLAKSIRILADMEEPI-GQILKRTELADGLILEKTSCPLGVLLIVFES-RPD-ALVQIASLA 426 (717)
Q Consensus 350 g~~~a~~~~~~~~~~~i~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~PlGVV~~I~p~-~P~-~~~~~~~~A 426 (717)
.++ ..|+...++.+++++...+.. +...+.. ..+...+++++|+|||++|+|| ||. +.+++++||
T Consensus 105 --~~a--------~~ev~~~~~~~~~~a~~~~~~~~~~~~~~--~~~~~~~~~~~P~GVV~~I~PwN~P~~~~~~~~~~A 172 (497)
T 3k2w_A 105 --SVA--------EMEVDVTATFIDYGCDNALTIEGDILPSD--NQDEKIYIHKVPRGVVVGITAWNFPLALAGRKIGPA 172 (497)
T ss_dssp --HHH--------HHHHHHHHHHHHHHHHTTTTCCEEEEECS--STTEEEEEEEEECSEEEEECCSSSHHHHHHHHHHHH
T ss_pred --HHH--------HHHHHHHHHHHHHHHHHHHHhcCcccccC--CCCcceeEEEcCCceEEEECCCccHHHHHHHHHHHH
Confidence 122 236777888888888665433 3332211 2456678899999999999998 785 667999999
Q ss_pred HHhCCEEEEeCCcchHHHHHHHHHHHHHhcccc-cCcCceEEecC-CChhhhhhcCCCCccEEEeecCHHHHHHHHhhcC
Q 005041 427 IRSGNGLLLKGGKEAMRSNAILHKVITSAIPDT-VGEKLIGLVTS-REEIPDLLKLDDVIDLVIPRGSNKLVSQIKESTK 504 (717)
Q Consensus 427 LaaGN~vVlKps~~tp~t~~~l~~~~~~al~~a-lP~gvv~vv~~-~~~~~~~l~~~~~v~~v~fTGs~~~g~~i~~~a~ 504 (717)
|++||+||+||||.||+|+.++++++.+ + ||+|+||+|+| +.++++.|..||+||+|+||||+++||.|++.+.
T Consensus 173 LaaGN~VVlKps~~tp~t~~~l~~ll~~----aGlP~gvv~vv~g~~~~~g~~L~~~p~vd~I~fTGS~~~G~~i~~~aa 248 (497)
T 3k2w_A 173 LITGNTMVLKPTQETPLATTELGRIAKE----AGLPDGVLNVINGTGSVVGQTLCESPITKMITMTGSTVAGKQIYKTSA 248 (497)
T ss_dssp HHTTCEEEEECCSSSCHHHHHHHHHHHH----TTCCTTSEEECCSCTTTHHHHHHHCSSEEEEEEESCHHHHHHHHHHHT
T ss_pred HHcCCEEEEECCCCChHHHHHHHHHHHH----hCcCcCeEEEEeCCchHHHHHHHhCCCcCEEEEECcHHHHHHHHHHhh
Confidence 9999999999999999999999999987 8 99999999996 6678888888999999999999999999998873
Q ss_pred ---CCEEEecCCcceEEEcCCCCHHHHHHHHHhhccCCCc-cccccceEEEcCcccChhhHHHHHHHHHHcCc-------
Q 005041 505 ---IPVLGHADGICHVYVDKSANLDVAKNIVIDAKIDYPA-ACNAMETLLVHKDLACNGALNELVVELQHEGV------- 573 (717)
Q Consensus 505 ---~p~~lElGGk~p~iV~~dADl~~A~~~i~~~~~~n~g-~C~a~~rv~V~~~i~d~~f~~~l~~~~~~~~~------- 573 (717)
||+++|||||||+||++|||+|.|++.+++|+|.|+| +|+|++|+|||+++| |+|+++|+++++++.+
T Consensus 249 ~~l~pv~lElGGk~p~iV~~dADl~~Aa~~i~~~~~~n~GQ~C~a~~rvlV~~~i~-d~f~~~l~~~~~~~~vg~p~~~~ 327 (497)
T 3k2w_A 249 EYMTPVMLELGGKAPMVVMDDADLDKAAEDALWGRFANCGQVCTCVERLYVHASVY-DEFMAKFLPLVKGLKVGDPMDAD 327 (497)
T ss_dssp TTTCCEEEECCCCEEEEECTTCCHHHHHHHHHHHHHGGGGCSTTSEEEEEEETTTH-HHHHHHHHHHHHTCCBSCTTSTT
T ss_pred hcCCCeEEEcCCCCceEEcCCCCHHHHHHHHHHHHHhCCCCCCcCCcEEEEeHHHH-HHHHHHHHHHHHhccCCCCCCCC
Confidence 9999999999999999999999999999999999987 999999999999999 8999999999987632
Q ss_pred ---------------------------eE-ecCcc--c----cccc--c-C-----CCCccccccccCceEEEEEeCCHH
Q 005041 574 ---------------------------GL-FGGPR--A----SKLL--Q-I-----PETRLFHHEYNSMVCTVEIVDDVR 611 (717)
Q Consensus 574 ---------------------------~~-~g~~~--~----~~~~--p-i-----~~~~~~~eE~FGPVl~v~~~~~~d 611 (717)
++ .|+.+ . .++| | | ++|++++||+||||++|++|+|+|
T Consensus 328 ~~~gpli~~~~~~~v~~~i~~a~~~Ga~v~~gG~~~~~~~~~~g~~~~Ptvl~~v~~~~~i~~eEiFGPVl~v~~~~~~d 407 (497)
T 3k2w_A 328 SQMGPKCNQREIDNIDHIVHEAIKQGATVATGGKTATVEGFEGGCWYEPTVLVDVKQDNIVVHEETFGPILPIVKVSSME 407 (497)
T ss_dssp CSBCCCSCHHHHHHHHHHHHHHHHHHCEEEECCC---------CCCCCCEEEESCCTTSHHHHSCCCSSEEEEEEESCHH
T ss_pred CccccCcCHHHHHHHHHHHHHHHHCCCEEEecCccCCccccCCCceeCCEEEecCCCCcHhhcCCccCcEEEEEEeCCHH
Confidence 22 24431 1 2333 5 2 468999999999999999999999
Q ss_pred HHHHHHHhcCCCceeEEEecCHHHHHHHHhcCCeeeEEEcCCCCCCCCCccCCccccccccCcccccccchhhcccEEEE
Q 005041 612 AAIDHIHQHGSAHTDCIVAEDQKVAETFLCQVDSAAVFHNASTRFCDGARFGLGAEVGISTSRIHARGPVGVEGLLTTRW 691 (717)
Q Consensus 612 eAi~~aN~~~~GL~a~I~t~d~~~a~~~~~~l~~G~v~iN~~~~~~~~~pfG~g~~~G~~~~~~~~~g~~g~~~ft~~k~ 691 (717)
|||+++|+++|||++||||+|.++++++++++++|+|+||+++...+.+||||.++||+| +++|++|+++||+.|+
T Consensus 408 eAi~~aN~~~~gL~a~v~t~d~~~a~~~~~~l~aG~v~vN~~~~~~~~~PfGG~k~SG~G----~~~G~~gl~~ft~~k~ 483 (497)
T 3k2w_A 408 QAIEFCNDSIYGLSAYVHTQSFANINQAISDLEVGEVYINRGMGEQHQGFHNGWKQSGFG----GEDGKFGLEQYLEKKT 483 (497)
T ss_dssp HHHHHHTCSSEESEEEEECSBHHHHHHHHHHCCSSEEEESCCSCCCTTSCBCCEETSEES----CBSHHHHHHTTEEEEE
T ss_pred HHHHHHhcCCCCcEEEEEcCCHHHHHHHHHhCCeeEEEEcCCCCCCCCCCcCCcCCCcCC----ccchHHHHHHhcceEE
Confidence 999999999999999999999999999999999999999998877788999999999986 3579999999999999
Q ss_pred EEecCc
Q 005041 692 ILRGNG 697 (717)
Q Consensus 692 v~~~~~ 697 (717)
|.++..
T Consensus 484 v~~~~~ 489 (497)
T 3k2w_A 484 VYINEA 489 (497)
T ss_dssp EEEECC
T ss_pred EEEEcc
Confidence 988653
No 18
>3pqa_A Lactaldehyde dehydrogenase; structural genomics, protein structure initiative, nysgrc, P biology, oxidoreductase; 1.50A {Methanocaldococcus jannaschii} PDB: 3rhd_A*
Probab=100.00 E-value=7.1e-79 Score=684.43 Aligned_cols=414 Identities=18% Similarity=0.214 Sum_probs=346.6
Q ss_pred HHHhcCCcceEEEecCCcccccHhhHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHhh
Q 005041 270 IKVLEGKRVGTLFHRDAHLWVKQVGAREMAVAARESSRRLQALQSQDRRKILLDVADALEANESLIKVENEADVAAAQEA 349 (717)
Q Consensus 270 ~~~~tg~~iGT~i~a~~~~~~~~~~v~~av~~A~~A~~~w~~~~~~~R~~~L~~~a~~l~~~~~el~~~~~~d~~~~~~~ 349 (717)
.+|.+|+.++++..++ .+|+++++++|++||+.|+++|.++|.++|++++++|++|+++|++++++|++++..
T Consensus 17 ~nP~tg~~i~~~~~~~------~~~v~~av~aA~~A~~~w~~~~~~~R~~~L~~~a~~l~~~~~ela~~~~~e~Gk~~~- 89 (486)
T 3pqa_A 17 INPYSLEVIKKIPALS------REEAKEAIDTAEKYKEVMKNLPITKRYNILMNIAKQIKEKKEELAKILAIDAGKPIK- 89 (486)
T ss_dssp ECTTTCCEEEEECCCC------HHHHHHHHHHHHHTHHHHHTCCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHCCCHH-
T ss_pred ECCCCCCEEEEEcCCC------HHHHHHHHHHHHHHHHHhhhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHH-
Confidence 4578999999988888 899999999999999999999999999999999999999999999999888765432
Q ss_pred chhHHHHHHhhcChhHHHHHHHHHHHHhccccc-ccccccccccCCCceEEEeecceeEEEEEcCC-Cch-hHHHHHHHH
Q 005041 350 GYAKSLVSRLALKPGKISSLAKSIRILADMEEP-IGQILKRTELADGLILEKTSCPLGVLLIVFES-RPD-ALVQIASLA 426 (717)
Q Consensus 350 g~~~a~~~~~~~~~~~i~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~PlGVV~~I~p~-~P~-~~~~~~~~A 426 (717)
++ ..|+..+++.+++++...+. .+...+. .+...+++++|+|||++|+|| ||. +.+++++||
T Consensus 90 ---ea--------~~Ev~~~~~~~~~~a~~~~~~~~~~~~~----~~~~~~~~~~P~GVv~~I~PwN~P~~~~~~~~~~A 154 (486)
T 3pqa_A 90 ---QA--------RVEVERSIGTFKLAAFYVKEHRDEVIPS----DDRLIFTRREPVGIVGAITPFNFPLNLSAHKIAPA 154 (486)
T ss_dssp ---HH--------HHHHHHHHHHHHHHHHHHHHCCEEEECC----TTEEEEEEEEECSEEEEEECSSSHHHHHHHHHHHH
T ss_pred ---HH--------HHHHHHHHHHHHHHHHHHHHhcCceecC----CCceeEEEEccccEEEEECCCchHHHHHHHHHHHH
Confidence 22 23566666777766654332 2322221 245678899999999999998 685 678999999
Q ss_pred HHhCCEEEEeCCcchHHHHHHHHHHHHHhcccc-cCcCceEEecC-CChhhhhhcCCCCccEEEeecCHHHHHHHHhhc-
Q 005041 427 IRSGNGLLLKGGKEAMRSNAILHKVITSAIPDT-VGEKLIGLVTS-REEIPDLLKLDDVIDLVIPRGSNKLVSQIKEST- 503 (717)
Q Consensus 427 LaaGN~vVlKps~~tp~t~~~l~~~~~~al~~a-lP~gvv~vv~~-~~~~~~~l~~~~~v~~v~fTGs~~~g~~i~~~a- 503 (717)
|++||+||+||||.||+|+.++++++.++++++ +|+|++|+|+| ++++++.|..||+||+|+||||+++||.|++.+
T Consensus 155 LaaGN~VVlKps~~tp~t~~~l~~l~~~al~~~GlP~gvv~vv~g~~~~~g~~L~~~p~vd~V~fTGS~~~g~~i~~~aa 234 (486)
T 3pqa_A 155 IATGNVIVHHPSSKAPLVCIELAKIIENALKKYNVPLGVYNLLTGAGEVVGDEIVVNEKVNMISFTGSSKVGELITKKAG 234 (486)
T ss_dssp HHTTCEEEEEECTTSCHHHHHHHHHHHHHHHHTTCCGGGEEECCSCTTTHHHHHHHCTTCCEEEEESCHHHHHHHHHHCC
T ss_pred HHcCCEEEEECCCCchHHHHHHHHHHHHHHHhcCCCCCeEEEEeCCchHHHHHHHhCCCccEEEEECChHHHHHHHHHcC
Confidence 999999999999999999999999999998888 99999999996 667788888899999999999999999999887
Q ss_pred CCCEEEecCCcceEEEcCCCCHHHHHHHHHhhccCCCc-cccccceEEEcCcccChhhHHHHHHHHHHcCc---------
Q 005041 504 KIPVLGHADGICHVYVDKSANLDVAKNIVIDAKIDYPA-ACNAMETLLVHKDLACNGALNELVVELQHEGV--------- 573 (717)
Q Consensus 504 ~~p~~lElGGk~p~iV~~dADl~~A~~~i~~~~~~n~g-~C~a~~rv~V~~~i~d~~f~~~l~~~~~~~~~--------- 573 (717)
.||+++|||||||+||++|||+|.|++.+++|+|.|+| +|+|++|+|||+++| |+|+++|+++++++.+
T Consensus 235 ~~~v~lELGGk~p~iV~~dADl~~Aa~~i~~~~~~n~GQ~C~a~~rvlV~~~i~-d~f~~~l~~~~~~~~~g~p~~~~~~ 313 (486)
T 3pqa_A 235 FKKIALELGGVNPNIVLKDADLNKAVNALIKGSFIYAGQVCISVGMILVDESIA-DKFIEMFVNKAKVLNVGNPLDEKTD 313 (486)
T ss_dssp SSEEEEECCCCEEEEECTTSCHHHHHHHHHHHHHGGGGCSTTSEEEEEEEGGGH-HHHHHHHHHHHHTCCBSCTTSTTCS
T ss_pred CCceeeccCCcCcEEEcCCCCHHHHHHHHHHHHHhcCCCCccCCcEEEEeHHHH-HHHHHHHHHHHHhcccCCCCcCCCC
Confidence 69999999999999999999999999999999999987 999999999999999 8999999999886531
Q ss_pred -------------------------eE-ecCccccccc-c-C----CCCccccccccCceEEEEEeCCHHHHHHHHHhcC
Q 005041 574 -------------------------GL-FGGPRASKLL-Q-I----PETRLFHHEYNSMVCTVEIVDDVRAAIDHIHQHG 621 (717)
Q Consensus 574 -------------------------~~-~g~~~~~~~~-p-i----~~~~~~~eE~FGPVl~v~~~~~~deAi~~aN~~~ 621 (717)
++ .|+.....|+ | | ++|++++||+||||++|++|+| ||||+++|+++
T Consensus 314 ~gpli~~~~~~~v~~~i~~a~~~Ga~v~~gG~~~g~~~~Ptvl~v~~~~~i~~eEiFGPVl~v~~~~~-deAi~~aN~~~ 392 (486)
T 3pqa_A 314 VGPLISVEHAEWVEKVVEKAIDEGGKLLLGGKRDKALFYPTILEVDRDNILCKTETFAPVIPIIRTNE-EEMIDIANSTE 392 (486)
T ss_dssp BCCCSCHHHHHHHHHHHHHHHHTTCEEEECCCEETTEECCEEEECCTTSGGGTCCCCSSEEEEEEECH-HHHHHHHTCSS
T ss_pred cCCCCCHHHHHHHHHHHHHHHHCCCEEEecCCCCCcEeccEEEeCCCCChhhcccccccEEEEEEEcH-HHHHHHHhcCC
Confidence 11 2332211223 5 2 4689999999999999999999 99999999999
Q ss_pred CCceeEEEecCHHHHHHHHhcCCeeeEEEcCCCCC-CCCCccCCccccccccCcccccccchhhcccEEEEEEecCce-e
Q 005041 622 SAHTDCIVAEDQKVAETFLCQVDSAAVFHNASTRF-CDGARFGLGAEVGISTSRIHARGPVGVEGLLTTRWILRGNGH-V 699 (717)
Q Consensus 622 ~GL~a~I~t~d~~~a~~~~~~l~~G~v~iN~~~~~-~~~~pfG~g~~~G~~~~~~~~~g~~g~~~ft~~k~v~~~~~~-~ 699 (717)
|||++||||+|.++++++++++++|+|+||+++.+ .+.+||||.++||+| +++|++|+++||+.|+|+++... +
T Consensus 393 ~gL~a~v~t~d~~~a~~~~~~l~aG~v~vN~~~~~~~~~~PfGG~k~SG~G----r~~g~~gl~~f~~~k~v~~~~~~~~ 468 (486)
T 3pqa_A 393 YGLHSAIFTNDINKSLKFAENLEFGGVVINDSSLFRQDNMPFGGVKKSGLG----REGVKYAMEEMSNIKTIIISKAENL 468 (486)
T ss_dssp CCSEEEEECSBHHHHHHHHHHSCSSEEEESSCTTCCCTTSCBCCSGGGEES----CBSHHHHHHHTEEEEEEEEEC----
T ss_pred CCcEEEEECCCHHHHHHHHHhCCcceEEEeCCCCcCCCCCCCCCcCcCcCC----CCCcHHHHHHhhceEEEEEcCCccC
Confidence 99999999999999999999999999999998653 358899999999996 45799999999999999987543 3
Q ss_pred e--cCCCCceeeec
Q 005041 700 V--DGDQGVVYTHK 711 (717)
Q Consensus 700 ~--~~~~~~~~~~~ 711 (717)
+ +++----|.|.
T Consensus 469 ~~~~~~~~~~~~~~ 482 (486)
T 3pqa_A 469 YFQSHHHHHHWSHP 482 (486)
T ss_dssp --------------
T ss_pred CCCCCCccccccCc
Confidence 3 34444456654
No 19
>1o04_A Aldehyde dehydrogenase, mitochondrial precursor; ALDH, NAD, NADH, isomerization, oxidoreductase; HET: NAD; 1.42A {Homo sapiens} SCOP: c.82.1.1 PDB: 1nzw_A* 3inl_A* 3n80_A* 1nzz_A* 1o00_A* 1nzx_A* 1o01_A* 1o05_A 1of7_A* 1o02_A* 3inj_A* 3sz9_A* 1zum_A 2onm_A* 2onp_A* 2onn_A 2ono_A* 3n81_A 3n82_A* 3n83_A* ...
Probab=100.00 E-value=1.5e-78 Score=683.94 Aligned_cols=398 Identities=14% Similarity=0.146 Sum_probs=345.6
Q ss_pred HHHhcCCcceEEEecCCcccccHhhHHHHHHHHHHHHH---HHhcCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHH
Q 005041 270 IKVLEGKRVGTLFHRDAHLWVKQVGAREMAVAARESSR---RLQALQSQDRRKILLDVADALEANESLIKVENEADVAAA 346 (717)
Q Consensus 270 ~~~~tg~~iGT~i~a~~~~~~~~~~v~~av~~A~~A~~---~w~~~~~~~R~~~L~~~a~~l~~~~~el~~~~~~d~~~~ 346 (717)
.+|.+|+.++++..++ .+|+++++++|++||+ .|++++.++|.++|++++++|++|+++|++++++|++++
T Consensus 40 ~nP~tg~~i~~~~~~~------~~~v~~av~~A~~A~~~~~~w~~~~~~~R~~~L~~~a~~l~~~~~ela~~~~~e~Gk~ 113 (500)
T 1o04_A 40 VNPSTGEVICQVAEGD------KEDVDKAVKAARAAFQLGSPWRRMDASHRGRLLNRLADLIERDRTYLAALETLDNGKP 113 (500)
T ss_dssp EETTTTEEEEEEECBC------HHHHHHHHHHHHHHTSTTSHHHHSCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHCCC
T ss_pred ECCCCCCEEEEEeCCC------HHHHHHHHHHHHHHhhcccccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCC
Confidence 3478899999998888 8999999999999999 999999999999999999999999999999998887654
Q ss_pred HhhchhHHHHHHhhcChhHHHHHHHHHHHHhccccc-ccccccccccCCCceEEEeecceeEEEEEcCC-Cch-hHHHHH
Q 005041 347 QEAGYAKSLVSRLALKPGKISSLAKSIRILADMEEP-IGQILKRTELADGLILEKTSCPLGVLLIVFES-RPD-ALVQIA 423 (717)
Q Consensus 347 ~~~g~~~a~~~~~~~~~~~i~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~PlGVV~~I~p~-~P~-~~~~~~ 423 (717)
.. ++. ..|+...++.++++++..+. .+...+. ..+...+++|+|+|||++|+|| ||. +.++++
T Consensus 114 ~~----ea~-------~~ev~~~~~~~~~~a~~~~~~~g~~~~~---~~~~~~~~~~~P~GVv~~I~PwN~P~~~~~~~~ 179 (500)
T 1o04_A 114 YV----ISY-------LVDLDMVLKCLRYYAGWADKYHGKTIPI---DGDFFSYTRHEPVGVCGQIIPWNFPLLMQAWKL 179 (500)
T ss_dssp HH----HHH-------HTHHHHHHHHHHHHHHHTTTCCEEEECC---SSSEEEEEEEEECCEEEEECCSSSHHHHHHHHH
T ss_pred HH----HHH-------HHHHHHHHHHHHHHHHHHHHhhCcceec---CCCceEEEEEecCCcEEEECCCCchHHHHHHHH
Confidence 31 221 13567777788887765432 3332221 2345668899999999999998 695 678999
Q ss_pred HHHHHhCCEEEEeCCcchHHHHHHHHHHHHHhcccc-cCcCceEEecC-CChhhhhhcCCCCccEEEeecCHHHHHHHHh
Q 005041 424 SLAIRSGNGLLLKGGKEAMRSNAILHKVITSAIPDT-VGEKLIGLVTS-REEIPDLLKLDDVIDLVIPRGSNKLVSQIKE 501 (717)
Q Consensus 424 ~~ALaaGN~vVlKps~~tp~t~~~l~~~~~~al~~a-lP~gvv~vv~~-~~~~~~~l~~~~~v~~v~fTGs~~~g~~i~~ 501 (717)
+|||++||+||+||||.||+|+.+|++++.+ + ||+|++|+|+| +.++++.|..||+||+|+||||+++||.|++
T Consensus 180 a~ALaaGN~VVlKps~~tp~t~~~l~~l~~~----aGlP~gvv~vv~g~~~~~g~~L~~~p~v~~I~FTGS~~~G~~i~~ 255 (500)
T 1o04_A 180 GPALATGNVVVMKVAEQTPLTALYVANLIKE----AGFPPGVVNIVPGFGPTAGAAIASHEDVDKVAFTGSTEIGRVIQV 255 (500)
T ss_dssp HHHHHTTCEEEEECCTTSCHHHHHHHHHHHH----HTCCTTSEEECCBCTTTHHHHHHTCTTCCEEEEESCHHHHHHHHH
T ss_pred HHHHHcCCEEEEECCccChHHHHHHHHHHHH----hCCCcCeEEEEecCcHHHHHHHHhCCCcCEEEEECCHHHHHHHHH
Confidence 9999999999999999999999999999987 7 99999999996 6678888889999999999999999999987
Q ss_pred hcC----CCEEEecCCcceEEEcCCCCHHHHHHHHHhhccCCCc-cccccceEEEcCcccChhhHHHHHHHHHHcC----
Q 005041 502 STK----IPVLGHADGICHVYVDKSANLDVAKNIVIDAKIDYPA-ACNAMETLLVHKDLACNGALNELVVELQHEG---- 572 (717)
Q Consensus 502 ~a~----~p~~lElGGk~p~iV~~dADl~~A~~~i~~~~~~n~g-~C~a~~rv~V~~~i~d~~f~~~l~~~~~~~~---- 572 (717)
.+. ||+++|||||||+||++|||+|.|++.+++++|.|+| +|+|++|+|||+++| |+|+++|+++++++.
T Consensus 256 ~aa~~~l~pv~lELGGk~p~iV~~dADl~~Aa~~i~~~~~~n~GQ~C~a~~rvlV~~~i~-d~f~~~l~~~~~~~~~G~p 334 (500)
T 1o04_A 256 AAGSSNLKRVTLELGGKSPNIIMSDADMDWAVEQAHFALFFNQGQCSCAGSRTFVQEDIY-DEFVERSVARAKSRVVGNP 334 (500)
T ss_dssp HHHHTTCCEEEEECCCCEEEEECTTSCHHHHHHHHHHHHHGGGGCCTTCEEEEEEEHHHH-HHHHHHHHHHHHHCCBCCT
T ss_pred hhhhhcCceEEEEcCCcCeEEECCCCCHHHHHHHHHHHHhccCCCCCCCCCEEEEehhHH-HHHHHHHHHHHHhCcCCCc
Confidence 654 9999999999999999999999999999999999987 999999999999999 899999999988752
Q ss_pred ------------------------------ceEe-cCccc--cccc--c-C-----CCCccccccccCceEEEEEeCCHH
Q 005041 573 ------------------------------VGLF-GGPRA--SKLL--Q-I-----PETRLFHHEYNSMVCTVEIVDDVR 611 (717)
Q Consensus 573 ------------------------------~~~~-g~~~~--~~~~--p-i-----~~~~~~~eE~FGPVl~v~~~~~~d 611 (717)
+++. |+... .++| | | ++|++++||+||||++|++|+|+|
T Consensus 335 ~~~~~~~Gpli~~~~~~rv~~~i~~a~~~Ga~~~~gG~~~~~~g~~~~PTvl~~v~~~~~i~~eEiFGPVl~v~~~~~~d 414 (500)
T 1o04_A 335 FDSKTEQGPQVDETQFKKILGYINTGKQEGAKLLCGGGIAADRGYFIQPTVFGDVQDGMTIAKEEIFGPVMQILKFKTIE 414 (500)
T ss_dssp TSTTCSBCCCSSHHHHHHHHHHHHHHHHTTCEEEECCSBCCSSSSCBCCEEEESCCTTSHHHHSCCCSSEEEEEEECCHH
T ss_pred ccccCccCcccCHHHHHHHHHHHHHHHhCCCEEEeCCccCCCCCCeeCCEEEeCCCCCChhhhCcccceEEEEEeeCCHH
Confidence 2222 44332 2333 5 3 358999999999999999999999
Q ss_pred HHHHHHHhcCCCceeEEEecCHHHHHHHHhcCCeeeEEEcCCCCCCCCCccCCccccccccCcccccccchhhcccEEEE
Q 005041 612 AAIDHIHQHGSAHTDCIVAEDQKVAETFLCQVDSAAVFHNASTRFCDGARFGLGAEVGISTSRIHARGPVGVEGLLTTRW 691 (717)
Q Consensus 612 eAi~~aN~~~~GL~a~I~t~d~~~a~~~~~~l~~G~v~iN~~~~~~~~~pfG~g~~~G~~~~~~~~~g~~g~~~ft~~k~ 691 (717)
|||+++|+++|||++||||+|.++++++++++++|+|+||++....+.+||||.+.||+| +++|++|+++|++.|+
T Consensus 415 eAi~~aN~~~~gL~a~v~t~d~~~a~~~~~~l~aG~V~iN~~~~~~~~~PfGG~k~SG~G----~~~G~~gl~~f~~~K~ 490 (500)
T 1o04_A 415 EVVGRANNSTYGLAAAVFTKDLDKANYLSQALQAGTVWVNCYDVFGAQSPFGGYKMSGSG----RELGEYGLQAYTEVKT 490 (500)
T ss_dssp HHHHHHHCSSCCSEEEEECSBHHHHHHHHHHCCSSEEEESCSSCCCTTSCBCCSGGGEES----CBSTGGGGGGGEEEEE
T ss_pred HHHHHHhcCCCCceEEEECCCHHHHHHHHHhCCeeEEEECCCCCCCCCCCCCCcCCCCCC----ccchHHHHHHhcceEE
Confidence 999999999999999999999999999999999999999998766678999999999886 3579999999999999
Q ss_pred EEecC
Q 005041 692 ILRGN 696 (717)
Q Consensus 692 v~~~~ 696 (717)
|.++.
T Consensus 491 v~~~~ 495 (500)
T 1o04_A 491 VTVKV 495 (500)
T ss_dssp EEEEC
T ss_pred EEEec
Confidence 98853
No 20
>1wnd_A Putative betaine aldehyde dehydrogenase; NADH, fluorescence, kinetics, oxidor; 2.10A {Escherichia coli} SCOP: c.82.1.1 PDB: 1wnb_A
Probab=100.00 E-value=3e-78 Score=680.76 Aligned_cols=398 Identities=15% Similarity=0.153 Sum_probs=345.6
Q ss_pred HHHhcCCcceEEEecCCcccccHhhHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHhh
Q 005041 270 IKVLEGKRVGTLFHRDAHLWVKQVGAREMAVAARESSRRLQALQSQDRRKILLDVADALEANESLIKVENEADVAAAQEA 349 (717)
Q Consensus 270 ~~~~tg~~iGT~i~a~~~~~~~~~~v~~av~~A~~A~~~w~~~~~~~R~~~L~~~a~~l~~~~~el~~~~~~d~~~~~~~ 349 (717)
.+|.+|+.++++..++ .+|+++++++|++||+.|+++|.++|.++|++++++|++|+++|++++++|++++..
T Consensus 43 ~nP~tg~~i~~~~~~~------~~~v~~av~~A~~A~~~w~~~~~~~R~~~L~~~a~~l~~~~~ela~~~~~e~Gk~~~- 115 (495)
T 1wnd_A 43 YNPATGDVLLEIAEAS------AEQVDAAVRAADAAFAEWGQTTPKVRAECLLKLADVIEENGQVFAELESRNCGKPLH- 115 (495)
T ss_dssp EETTTTEEEEEEECCC------HHHHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHCCCHH-
T ss_pred ECCCCCCEEEEEeCCC------HHHHHHHHHHHHHHHHHhhhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHH-
Confidence 5688999999998888 889999999999999999999999999999999999999999999999888765431
Q ss_pred chhHHHHHHhhcChhHHHHHHHHHHHHhccccc-ccccccccccCCCceEEEeecceeEEEEEcCC-Cch-hHHHHHHHH
Q 005041 350 GYAKSLVSRLALKPGKISSLAKSIRILADMEEP-IGQILKRTELADGLILEKTSCPLGVLLIVFES-RPD-ALVQIASLA 426 (717)
Q Consensus 350 g~~~a~~~~~~~~~~~i~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~PlGVV~~I~p~-~P~-~~~~~~~~A 426 (717)
++. ..|+..+++.++++++..+. .++..+.. . .+...+++|+|+|||++|+|| ||. +.+++++||
T Consensus 116 ---ea~-------~~Ev~~~~~~~~~~a~~~~~~~g~~~~~~-~-~~~~~~~~~~P~GVV~~I~PwN~P~~~~~~~~a~A 183 (495)
T 1wnd_A 116 ---SAF-------NDEIPAIVDVFRFFAGAARCLNGLAAGEY-L-EGHTSMIRRDPLGVVASIAPWNYPLMMAAWKLAPA 183 (495)
T ss_dssp ---HHH-------HTHHHHHHHHHHHHHHHTTCCEEECBEEE-E-TTEEEEEEEEECSEEEEECCSSSHHHHHHHHHHHH
T ss_pred ---HHH-------HHHHHHHHHHHHHHHHHHHHhcCccccCC-C-CCceeEEeeecCCeEEEECCCcchHHHHHHHHHHH
Confidence 221 11567777888887765433 23333211 1 244668899999999999998 694 678999999
Q ss_pred HHhCCEEEEeCCcchHHHHHHHHHHHHHhcccccCcCceEEecC-CChhhhhhcCCCCccEEEeecCHHHHHHHHhhc--
Q 005041 427 IRSGNGLLLKGGKEAMRSNAILHKVITSAIPDTVGEKLIGLVTS-REEIPDLLKLDDVIDLVIPRGSNKLVSQIKEST-- 503 (717)
Q Consensus 427 LaaGN~vVlKps~~tp~t~~~l~~~~~~al~~alP~gvv~vv~~-~~~~~~~l~~~~~v~~v~fTGs~~~g~~i~~~a-- 503 (717)
|++||+||+|||+.||+|+.++++++.+ +||+|++|+|+| +.++++.|..||+||+|+||||+++||.|++.+
T Consensus 184 LaaGN~VVlKps~~tp~t~~~l~~l~~e----alP~gvv~vv~g~~~~~g~~L~~~p~vd~I~FTGS~~~G~~i~~~aa~ 259 (495)
T 1wnd_A 184 LAAGNCVVLKPSEITPLTALKLAELAKD----IFPAGVVNILFGRGKTVGDPLTGHPKVRMVSLTGSIATGEHIISHTAS 259 (495)
T ss_dssp HHTTCEEEEECCTTCCHHHHHHHHHHTT----TSCTTSEEECCCCTTTTHHHHHTCTTEEEEEEESCHHHHHHHHHHHGG
T ss_pred HHcCCeeEeeCCCCChHHHHHHHHHHHH----hCCcCeEEEEeCCCHHHHHHHHhCCCcCEEEEECcHHHHHHHHHHHHh
Confidence 9999999999999999999999999986 499999999996 666788888899999999999999999999887
Q ss_pred -CCCEEEecCCcceEEEcCCCCHHHHHHHHHhhccCCCc-cccccceEEEcCcccChhhHHHHHHHHHHc----------
Q 005041 504 -KIPVLGHADGICHVYVDKSANLDVAKNIVIDAKIDYPA-ACNAMETLLVHKDLACNGALNELVVELQHE---------- 571 (717)
Q Consensus 504 -~~p~~lElGGk~p~iV~~dADl~~A~~~i~~~~~~n~g-~C~a~~rv~V~~~i~d~~f~~~l~~~~~~~---------- 571 (717)
.||+++|||||||+||++|||+|.|++.+++++|.|+| +|+|++|+|||+++| |+|+++|+++++++
T Consensus 260 ~l~~v~lELGGk~p~iV~~dADl~~Aa~~i~~~~~~n~GQ~C~a~~rvlV~~~i~-d~f~~~l~~~~~~~~~g~p~~~~~ 338 (495)
T 1wnd_A 260 SIKRTHMELGGKAPVIVFDDADIEAVVEGVRTFGYYNAGQDCTAACRIYAQKGIY-DTLVEKLGAAVATLKSGAPDDEST 338 (495)
T ss_dssp GTCEEEEECCCCCEEEECTTSCHHHHHHHHHHHTTGGGGCSTTCCCEEEEETTTH-HHHHHHHHHHHHTCCBCCTTSTTC
T ss_pred cCCccccccCCCCeEEECCcCCHHHHHHHHHHHHHhcCCCCCCCCcEEEecchhH-HHHHHHHHHHHHhccCCCCccCCC
Confidence 49999999999999999999999999999999999987 999999999999999 89999999988764
Q ss_pred ------------------------C-ceEe-cCc-cc-cccc--c-C-----CCCccccccccCceEEEEEeCCHHHHHH
Q 005041 572 ------------------------G-VGLF-GGP-RA-SKLL--Q-I-----PETRLFHHEYNSMVCTVEIVDDVRAAID 615 (717)
Q Consensus 572 ------------------------~-~~~~-g~~-~~-~~~~--p-i-----~~~~~~~eE~FGPVl~v~~~~~~deAi~ 615 (717)
| +++. |+. .. .++| | | ++|++++||+||||++|++|+|+||||+
T Consensus 339 ~~Gpli~~~~~~rv~~~i~~a~~~G~a~~~~gG~~~~~~g~~~~PTvl~~v~~~~~i~~eEiFGPVl~v~~~~~~deAi~ 418 (495)
T 1wnd_A 339 ELGPLSSLAHLERVGKAVEEAKATGHIKVITGGEKRKGNGYYYAPTLLAGALQDDAIVQKEVFGPVVSVTPFDNEEQVVN 418 (495)
T ss_dssp CBCCCSCHHHHHHHHHHHHHHHHTSSCEEEECCSBCSSSSCCBCCEEEECCCTTSHHHHSCCCSSEEEEEEECCHHHHHH
T ss_pred CccCCCCHHHHHHHHHHHHHHHhCCCeEEEECCcccCCCCCeeCCEEEeCCCCCChhhhccccCceEEEEEeCCHHHHHH
Confidence 2 3443 544 21 2433 5 3 3689999999999999999999999999
Q ss_pred HHHhcCCCceeEEEecCHHHHHHHHhcCCeeeEEEcCCCCCCCCCccCCccccccccCcccccccchhhcccEEEEEEec
Q 005041 616 HIHQHGSAHTDCIVAEDQKVAETFLCQVDSAAVFHNASTRFCDGARFGLGAEVGISTSRIHARGPVGVEGLLTTRWILRG 695 (717)
Q Consensus 616 ~aN~~~~GL~a~I~t~d~~~a~~~~~~l~~G~v~iN~~~~~~~~~pfG~g~~~G~~~~~~~~~g~~g~~~ft~~k~v~~~ 695 (717)
++|+++|||++||||+|.++++++++++++|+|+||++....+.+||||.+.||+| +++|++|+++||+.|+|.++
T Consensus 419 ~aN~~~~gL~a~v~t~d~~~a~~~~~~l~aG~V~iN~~~~~~~~~PfGG~k~SG~G----r~~G~~gl~~f~~~k~v~~~ 494 (495)
T 1wnd_A 419 WANDSQYGLASSVWTKDVGRAHRVSARLQYGCTWVNTHFMLVSEMPHGGQKLSGYG----KDMSLYGLEDYTVVRHVMVK 494 (495)
T ss_dssp HHHSSSCCSEEEEECSBHHHHHHHHHHCCSSEEEESCCCCCCTTSCBCCSGGGEEC----CBSHHHHHHTTEEEEEEEEE
T ss_pred HHhcCCCCeeEEEECCCHHHHHHHHHhCCcceEEECCCCCCCCCCCCCCCCcCcCC----ccchHHHHHHhhCeEEEEec
Confidence 99999999999999999999999999999999999997766678999999999986 35799999999999999864
No 21
>3iwj_A Putative aminoaldehyde dehydrogenase; rossmann fold, dimer, betaine aldehyde dehydrogenase, NAD, oxidoreductase; HET: NAD; 2.15A {Pisum sativum} SCOP: c.82.1.0 PDB: 3iwk_A* 4a0m_A*
Probab=100.00 E-value=1.6e-78 Score=685.37 Aligned_cols=401 Identities=17% Similarity=0.187 Sum_probs=344.3
Q ss_pred HHHhcCCcceEEEecCCcccccHhhHHHHHHHHHHHHH-----HHhcCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHH
Q 005041 270 IKVLEGKRVGTLFHRDAHLWVKQVGAREMAVAARESSR-----RLQALQSQDRRKILLDVADALEANESLIKVENEADVA 344 (717)
Q Consensus 270 ~~~~tg~~iGT~i~a~~~~~~~~~~v~~av~~A~~A~~-----~w~~~~~~~R~~~L~~~a~~l~~~~~el~~~~~~d~~ 344 (717)
.+|.+++.++++..++ .+|+++|+++|++||+ .|++++.++|.++|++++++|++|+++|++++++|+|
T Consensus 28 ~nP~tg~~i~~~~~~~------~~~v~~av~~A~~A~~~~~~~~w~~~~~~~R~~~L~~~a~~l~~~~~ela~~~~~e~G 101 (503)
T 3iwj_A 28 INPATQNIIGDIPAAT------KEDVDVAVAAAKTALTRNKGADWATASGAVRARYLRAIAAKVTEKKPELAKLESIDCG 101 (503)
T ss_dssp ECTTTCCEEEEEECCC------HHHHHHHHHHHHHHHHGGGGTTTTSSCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHC
T ss_pred ECCCCCCEEEEEcCCC------HHHHHHHHHHHHHHhhhcCCcchhhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 4578999999998888 8999999999999999 9999999999999999999999999999999988876
Q ss_pred HHHhhchhHHHHHHhhcChhHHHHHHHHHHHHhcccccc-cccc-cccccCCCceEEEeecceeEEEEEcCC-Cch-hHH
Q 005041 345 AAQEAGYAKSLVSRLALKPGKISSLAKSIRILADMEEPI-GQIL-KRTELADGLILEKTSCPLGVLLIVFES-RPD-ALV 420 (717)
Q Consensus 345 ~~~~~g~~~a~~~~~~~~~~~i~~~~~~~~~~~~~~~~~-~~~~-~~~~~~~~~~~~~~~~PlGVV~~I~p~-~P~-~~~ 420 (717)
++.. ++ ..|+..+++.+++++...+.. +... +......+...+++|+|+|||++|+|| ||. +.+
T Consensus 102 k~~~----ea--------~~ev~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~GVv~~I~PwN~P~~~~~ 169 (503)
T 3iwj_A 102 KPLD----EA--------AWDIDDVAGCFEYYADLAEKLDARQKAPVSLPMDTFKSHVLREPIGVVGLITPWNYPMLMAT 169 (503)
T ss_dssp CCHH----HH--------HHHHHHHHHHHHHHHHHHHHHHHHTTEEECCSCTTEEEEEEEEECCEEEEECCSSSHHHHHH
T ss_pred CCHH----HH--------HHHHHHHHHHHHHHHHHHHHhcCCccccccccCCCccceEEEcCCceEEEECCCchHHHHHH
Confidence 5432 22 125566666666666443321 2111 100111345678899999999999998 785 567
Q ss_pred HHHHHHHHhCCEEEEeCCcchHHHHHHHHHHHHHhcccc-cCcCceEEecC-CChhhhhhcCCCCccEEEeecCHHHHHH
Q 005041 421 QIASLAIRSGNGLLLKGGKEAMRSNAILHKVITSAIPDT-VGEKLIGLVTS-REEIPDLLKLDDVIDLVIPRGSNKLVSQ 498 (717)
Q Consensus 421 ~~~~~ALaaGN~vVlKps~~tp~t~~~l~~~~~~al~~a-lP~gvv~vv~~-~~~~~~~l~~~~~v~~v~fTGs~~~g~~ 498 (717)
++++|||++||+||+||||.||+|+.++++++.+ + ||+|+||+|+| +.++++.|..||+||+|+||||+++||.
T Consensus 170 ~~~~~ALaaGN~VVlKps~~tp~t~~~l~~l~~~----aGlP~gvv~vv~g~~~~~g~~L~~~~~v~~I~FTGS~~~G~~ 245 (503)
T 3iwj_A 170 WKVAPALAAGCAAILKPSELASLTCLELGEICKE----VGLPPGVLNILTGLGPEAGAPLATHPDVDKVAFTGSSATGSK 245 (503)
T ss_dssp HHHHHHHHTTCEEEEECCTTSCHHHHHHHHHHHH----HTCCTTSEEECCSCHHHHTHHHHTCTTCCEEEEESCHHHHHH
T ss_pred HHHHHHHhcCCeEEEECCCcchHHHHHHHHHHHH----hCcCcCeEEEEeCCcHHHHHHHhhCCCccEEEEECcHHHHHH
Confidence 9999999999999999999999999999999987 7 99999999996 5678888989999999999999999999
Q ss_pred HHhhc---CCCEEEecCCcceEEEcCCCCHHHHHHHHHhhccCCCc-cccccceEEEcCcccChhhHHHHHHHHHHcC--
Q 005041 499 IKEST---KIPVLGHADGICHVYVDKSANLDVAKNIVIDAKIDYPA-ACNAMETLLVHKDLACNGALNELVVELQHEG-- 572 (717)
Q Consensus 499 i~~~a---~~p~~lElGGk~p~iV~~dADl~~A~~~i~~~~~~n~g-~C~a~~rv~V~~~i~d~~f~~~l~~~~~~~~-- 572 (717)
|++.+ .||+++|||||||+||++|||+|.|++.+++|+|.|+| +|+|++|||||+++| |+|+++|+++++++.
T Consensus 246 i~~~aa~~l~~v~lElGGk~p~iV~~dADl~~Aa~~i~~~~~~n~GQ~C~a~~rvlV~~~i~-d~f~~~l~~~~~~~~~g 324 (503)
T 3iwj_A 246 IMTAAAQLVKPVSLELGGKSPLVVFEDVDLDKAAEWAIFGCFWTNGQICSATSRLILHESIA-TEFLNRIVKWIKNIKIS 324 (503)
T ss_dssp HHHHHGGGTCCEEEECCCCEEEEECSSSCHHHHHHHHHHHHTGGGGCCTTCEEEEEEETTTH-HHHHHHHHHHHHTCCBS
T ss_pred HHHHHhcCCCCEEEECCCCCceEEcCCCCHHHHHHHHHHHHHhcCCCCcccCCeeEEcHHHH-HHHHHHHHHHHHhccCC
Confidence 99877 38999999999999999999999999999999999987 999999999999999 899999999888642
Q ss_pred --------------------------------ceE-ecCccc----cccc--c-C-----CCCccccccccCceEEEEEe
Q 005041 573 --------------------------------VGL-FGGPRA----SKLL--Q-I-----PETRLFHHEYNSMVCTVEIV 607 (717)
Q Consensus 573 --------------------------------~~~-~g~~~~----~~~~--p-i-----~~~~~~~eE~FGPVl~v~~~ 607 (717)
+++ .|+... .++| | | ++|++++||+||||++|++|
T Consensus 325 ~p~~~~~~~gpli~~~~~~~v~~~i~~a~~~Ga~v~~gG~~~~~~~~g~~~~PTvl~~v~~~~~i~~eEiFGPVl~v~~~ 404 (503)
T 3iwj_A 325 DPLEEGCRLGPVVSEGQYEKILKFVSNAKSEGATILTGGSRPEHLKKGFFIEPTIITDVTTNMQIWREEVFGPVLCVKTF 404 (503)
T ss_dssp CTTSTTCCBCCCSCHHHHHHHHHHHHHHHHTTCEEEECCSCCTTCCSSSCCCCEEEESCCTTSHHHHSCCCSSEEEEEEE
T ss_pred CCCCCCCcccCccCHHHHHHHHHHHHHHHHCCCEEEecCCCCccCCCCceeCCeeeecCCCCchhhCceeeCceEEEEEe
Confidence 122 244321 2333 5 2 36899999999999999999
Q ss_pred CCHHHHHHHHHhcCCCceeEEEecCHHHHHHHHhcCCeeeEEEcCCCCCCCCCccCCccccccccCcccccccchhhccc
Q 005041 608 DDVRAAIDHIHQHGSAHTDCIVAEDQKVAETFLCQVDSAAVFHNASTRFCDGARFGLGAEVGISTSRIHARGPVGVEGLL 687 (717)
Q Consensus 608 ~~~deAi~~aN~~~~GL~a~I~t~d~~~a~~~~~~l~~G~v~iN~~~~~~~~~pfG~g~~~G~~~~~~~~~g~~g~~~ft 687 (717)
+|+||||+++|+++|||++||||+|.++++++++++++|+|+||++....+.+||||.+.||+| +++|.+|+++||
T Consensus 405 ~~~deAi~~aN~~~~gL~a~v~t~d~~~a~~~~~~l~aG~v~iN~~~~~~~~~PfGG~k~SG~G----~~~G~~g~~~f~ 480 (503)
T 3iwj_A 405 STEEEAIDLANDTVYGLGAAVISNDLERCERVTKAFKAGIVWVNCSQPCFTQAPWGGVKRSGFG----RELGEWGLDNYL 480 (503)
T ss_dssp SSHHHHHHHHTCSSCCSEEEEECSCHHHHHHHHHHCCSSEEEESSSCCCCTTSCBCCSGGGEEC----CBSHHHHHHTTE
T ss_pred CCHHHHHHHHhCCCCCcEEEEECCCHHHHHHHHHhCCcceEEEcCCCCCCCCCCcCCcCcccCC----CcchHHHHHHhh
Confidence 9999999999999999999999999999999999999999999998777788999999999996 356999999999
Q ss_pred EEEEEEecCc
Q 005041 688 TTRWILRGNG 697 (717)
Q Consensus 688 ~~k~v~~~~~ 697 (717)
+.|+|.++.+
T Consensus 481 ~~k~v~~~~~ 490 (503)
T 3iwj_A 481 SVKQVTQYIS 490 (503)
T ss_dssp EEEEEEEECC
T ss_pred CeEEEEEeCC
Confidence 9999998653
No 22
>2o2p_A Formyltetrahydrofolate dehydrogenase; aldehyde dehydrogenase, FDH, oxidoreductase; 1.70A {Rattus norvegicus} PDB: 2o2q_A* 2o2r_A* 3rho_A* 3rhm_A* 3rhj_A* 3rhq_A* 3rhp_A* 3rhr_A* 3rhl_A*
Probab=100.00 E-value=1.1e-78 Score=687.20 Aligned_cols=400 Identities=15% Similarity=0.181 Sum_probs=345.6
Q ss_pred HHHhcCCcceEEEecCCcccccHhhHHHHHHHHHHHHH--HHhcCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHH
Q 005041 270 IKVLEGKRVGTLFHRDAHLWVKQVGAREMAVAARESSR--RLQALQSQDRRKILLDVADALEANESLIKVENEADVAAAQ 347 (717)
Q Consensus 270 ~~~~tg~~iGT~i~a~~~~~~~~~~v~~av~~A~~A~~--~w~~~~~~~R~~~L~~~a~~l~~~~~el~~~~~~d~~~~~ 347 (717)
.+|.+++.++++..++ .+|+++|+++|++||+ .|+++|.++|.++|++++++|++|+++|++++++|++++.
T Consensus 57 ~nP~tg~~i~~v~~a~------~~dv~~av~aA~~A~~~g~w~~~~~~~R~~~L~~~a~~l~~~~~ela~~~~~e~Gk~~ 130 (517)
T 2o2p_A 57 INPTDGSVICQVSLAQ------VSDVDKAVAAAKEAFENGLWGKINARDRGRLLYRLADVMEQHQEELATIEALDAGAVY 130 (517)
T ss_dssp ECTTTCCEEEEEECCC------HHHHHHHHHHHHHHHHTSGGGTSCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHCCCH
T ss_pred ECCCCCCEEEEEeCCC------HHHHHHHHHHHHHhcccCccccCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHcCCCH
Confidence 4578999999999888 8999999999999999 9999999999999999999999999999999988876542
Q ss_pred hhchhHHHHHHhhcChhHHHHHHHHHHHHhccccc-ccccccccc-cCCCceEEEeecceeEEEEEcCC-Cch-hHHHHH
Q 005041 348 EAGYAKSLVSRLALKPGKISSLAKSIRILADMEEP-IGQILKRTE-LADGLILEKTSCPLGVLLIVFES-RPD-ALVQIA 423 (717)
Q Consensus 348 ~~g~~~a~~~~~~~~~~~i~~~~~~~~~~~~~~~~-~~~~~~~~~-~~~~~~~~~~~~PlGVV~~I~p~-~P~-~~~~~~ 423 (717)
.++. ..|+..+++.++++++..+. .+...+... ...+...+++|+|+|||++|+|| ||. +.++++
T Consensus 131 ----~ea~-------~~Ev~~~~~~~~~~a~~~~~~~g~~~~~~~~~~~~~~~~~~~~P~GVV~~I~PwN~P~~~~~~~~ 199 (517)
T 2o2p_A 131 ----TLAL-------KTHVGMSIQTFRYFAGWCDKIQGATIPINQARPNRNLTLTKKEPVGVCGIVIPWNYPLMMLSWKT 199 (517)
T ss_dssp ----HHHH-------HTTTHHHHHHHHHHHHHGGGCCEEEECCCCCTTSCEEEEEEEEECCEEEEECCSSSHHHHHHHHH
T ss_pred ----HHHH-------HHHHHHHHHHHHHHHHHHHHhcCccccccccCCCCceEEEEecCCccEEEECCCcchHHHHHHHH
Confidence 1221 13577788888888765543 343322110 01233568899999999999998 685 667999
Q ss_pred HHHHHhCCEEEEeCCcchHHHHHHHHHHHHHhcccc-cCcCceEEecC-CChhhhhhcCCCCccEEEeecCHHHHHHHHh
Q 005041 424 SLAIRSGNGLLLKGGKEAMRSNAILHKVITSAIPDT-VGEKLIGLVTS-REEIPDLLKLDDVIDLVIPRGSNKLVSQIKE 501 (717)
Q Consensus 424 ~~ALaaGN~vVlKps~~tp~t~~~l~~~~~~al~~a-lP~gvv~vv~~-~~~~~~~l~~~~~v~~v~fTGs~~~g~~i~~ 501 (717)
+|||++||+||+||||.||+|+.++++++.+ + ||+|++|+|+| +.++++.|..||+||+|+||||+++|+.|++
T Consensus 200 a~ALaaGNtVVlKps~~tp~ta~~l~~l~~e----aGlP~gvv~vv~g~g~~~g~~L~~~~~v~~V~FTGS~~~G~~I~~ 275 (517)
T 2o2p_A 200 AACLAAGNTVVIKPAQVTPLTALKFAELTLK----AGIPKGVVNILPGSGSLVGQRLSDHPDVRKIGFTGSTEVGKHIMK 275 (517)
T ss_dssp HHHHHTTCEEEEECCTTCCHHHHHHHHHHHH----TTCCTTSEEECCSCHHHHHHHHHHCTTCCEEEEESCHHHHHHHHH
T ss_pred HHHHHcCCEEEEECCCccHHHHHHHHHHHHH----hCCCcCeEEEEeCCCHHHHHHHHhCCCCCEEEEECCHHHHHHHHH
Confidence 9999999999999999999999999999987 7 99999999997 5567888889999999999999999999987
Q ss_pred hcC----CCEEEecCCcceEEEcCCCCHHHHHHHHHhhccCCCc-cccccceEEEcCcccChhhHHHHHHHHHHcC----
Q 005041 502 STK----IPVLGHADGICHVYVDKSANLDVAKNIVIDAKIDYPA-ACNAMETLLVHKDLACNGALNELVVELQHEG---- 572 (717)
Q Consensus 502 ~a~----~p~~lElGGk~p~iV~~dADl~~A~~~i~~~~~~n~g-~C~a~~rv~V~~~i~d~~f~~~l~~~~~~~~---- 572 (717)
.+. ||+++|||||||+||++|||+|.|++.+++++|.|+| +|+|++|+|||+++| |+|+++|+++++++.
T Consensus 276 ~aa~~~lk~v~lELGGk~p~IV~~dADl~~Aa~~i~~~~f~n~GQ~C~a~~rv~V~~~i~-d~f~~~l~~~~~~~~vGdp 354 (517)
T 2o2p_A 276 SCALSNVKKVSLELGGKSPLIIFADCDLNKAVQMGMSSVFFNKGENCIAAGRLFVEESIH-NQFVQKVVEEVEKMKIGNP 354 (517)
T ss_dssp HHHHHTCCEEEEECCCCEEEEECTTSCHHHHHHHHHHHHHGGGGCCTTCEEEEEEEHHHH-HHHHHHHHHHHTTCCBSCT
T ss_pred HhHHhcCCeEEEECCCcCeEEECCCCCHHHHHHHHHHHHHhcCCCCCcCCeEEEEeHHHH-HHHHHHHHHHHHhcCCCCC
Confidence 664 9999999999999999999999999999999999986 999999999999999 899999999887642
Q ss_pred ------------------------------ceE-ecCccc--cccc--c-C-----CCCccccccccCceEEEEEeCC--
Q 005041 573 ------------------------------VGL-FGGPRA--SKLL--Q-I-----PETRLFHHEYNSMVCTVEIVDD-- 609 (717)
Q Consensus 573 ------------------------------~~~-~g~~~~--~~~~--p-i-----~~~~~~~eE~FGPVl~v~~~~~-- 609 (717)
+++ .|+... .++| | | ++|++++||+||||++|++|+|
T Consensus 355 ~~~~~~~Gpli~~~~~~~v~~~i~~a~~~Ga~~~~gG~~~~~~g~~~~PTvl~~v~~~~~i~~eEiFGPVl~v~~~~~~~ 434 (517)
T 2o2p_A 355 LERDTNHGPQNHEAHLRKLVEYCQRGVKEGATLVCGGNQVPRPGFFFQPTVFTDVEDHMYIAKEESFGPIMIISRFADGD 434 (517)
T ss_dssp TSTTCCBCCCSSHHHHHHHHHHHHHHHHTTCEEEECCSBCSSSSCCBCCEEEESCCTTSGGGTSCCCSSEEEEEEECTTC
T ss_pred CCCCCccCCCcCHHHHHHHHHHHHHHHHCCCEEEeccccCCCCCCeECCEEEeCCCCCChhhhccccccEEEEEEcCCCC
Confidence 122 244322 2333 5 3 4689999999999999999999
Q ss_pred HHHHHHHHHhcCCCceeEEEecCHHHHHHHHhcCCeeeEEEcCCCCCCCCCccCCccccccccCcccccccchhhcccEE
Q 005041 610 VRAAIDHIHQHGSAHTDCIVAEDQKVAETFLCQVDSAAVFHNASTRFCDGARFGLGAEVGISTSRIHARGPVGVEGLLTT 689 (717)
Q Consensus 610 ~deAi~~aN~~~~GL~a~I~t~d~~~a~~~~~~l~~G~v~iN~~~~~~~~~pfG~g~~~G~~~~~~~~~g~~g~~~ft~~ 689 (717)
+||||+++|+++|||++||||+|.++++++++++++|+|+||++....+.+||||.+.||+| +++|++|+++||+.
T Consensus 435 ~deAi~~aN~~~~GL~a~v~t~d~~~a~~~~~~l~aG~V~iN~~~~~~~~~PfGG~k~SG~G----r~~G~~~l~~~~~~ 510 (517)
T 2o2p_A 435 VDAVLSRANATEFGLASGVFTRDINKALYVSDKLQAGTVFINTYNKTDVAAPFGGFKQSGFG----KDLGEAALNEYLRI 510 (517)
T ss_dssp SHHHHHHHTCSSCCSCCEEECSBHHHHHHHHHHCCSSEEEESCSSCCCTTSCBCCCGGGEEC----CBSHHHHHHTTEEE
T ss_pred HHHHHHHHhcCCCCceEEEeCCCHHHHHHHHHhcCEeEEEECCCCCCCCCCCcCCcCcCCcC----ccChHHHHHHhCCc
Confidence 99999999999999999999999999999999999999999997766778999999999986 35799999999999
Q ss_pred EEEEec
Q 005041 690 RWILRG 695 (717)
Q Consensus 690 k~v~~~ 695 (717)
|+|+++
T Consensus 511 k~v~~~ 516 (517)
T 2o2p_A 511 KTVTFE 516 (517)
T ss_dssp EEEEEE
T ss_pred eEEEee
Confidence 999864
No 23
>3jz4_A Succinate-semialdehyde dehydrogenase [NADP+]; tetramer, NADP binding, oxidoreductase; HET: NAP; 2.30A {Escherichia coli}
Probab=100.00 E-value=4.9e-78 Score=678.92 Aligned_cols=397 Identities=17% Similarity=0.164 Sum_probs=348.1
Q ss_pred HHHhcCCcceEEEecCCcccccHhhHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHhh
Q 005041 270 IKVLEGKRVGTLFHRDAHLWVKQVGAREMAVAARESSRRLQALQSQDRRKILLDVADALEANESLIKVENEADVAAAQEA 349 (717)
Q Consensus 270 ~~~~tg~~iGT~i~a~~~~~~~~~~v~~av~~A~~A~~~w~~~~~~~R~~~L~~~a~~l~~~~~el~~~~~~d~~~~~~~ 349 (717)
.+|.+++.++++..++ .+|+++++++|++||+.|+++|.++|.++|++++++|++|+++|++++++|++++..
T Consensus 30 ~~P~t~~~i~~~~~~~------~~~v~~av~~A~~A~~~w~~~~~~~R~~~L~~~a~~l~~~~~~la~~~~~e~Gk~~~- 102 (481)
T 3jz4_A 30 TNPANGDKLGSVPKMG------ADETRAAIDAANRALPAWRALTAKERATILRNWFNLMMEHQDDLARLMTLEQGKPLA- 102 (481)
T ss_dssp ECTTTCCEEEEEECBC------HHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHCCCHH-
T ss_pred ECCCCCCEEEEEcCCC------HHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHH-
Confidence 4578999999998888 899999999999999999999999999999999999999999999999888765432
Q ss_pred chhHHHHHHhhcChhHHHHHHHHHHHHhcccc-cccccccccccCCCceEEEeecceeEEEEEcCC-Cch-hHHHHHHHH
Q 005041 350 GYAKSLVSRLALKPGKISSLAKSIRILADMEE-PIGQILKRTELADGLILEKTSCPLGVLLIVFES-RPD-ALVQIASLA 426 (717)
Q Consensus 350 g~~~a~~~~~~~~~~~i~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~PlGVV~~I~p~-~P~-~~~~~~~~A 426 (717)
++ ..|+..+++.+++++.... ..+...+. ...+...+++++|+|||++|+|| ||. +.+++++||
T Consensus 103 ---~a--------~~ev~~~~~~~~~~a~~~~~~~~~~~~~--~~~~~~~~~~~~P~GVv~~I~PwN~P~~~~~~~~~~A 169 (481)
T 3jz4_A 103 ---EA--------KGEISYAASFIEWFAEEGKRIYGDTIPG--HQADKRLIVIKQPIGVTAAITPWNFPAAMITRKAGPA 169 (481)
T ss_dssp ---HH--------HHHHHHHHHHHHHHHHHGGGCCEEEECC--SSTTEEEEEEEEECCEEEEECCSSSTTHHHHHHHHHH
T ss_pred ---HH--------HHHHHHHHHHHHHHHHHHHHhcCccccc--cCCCceEEEEEcCccEEEEECCCcchHHHHHHHHHHH
Confidence 22 2477888888988876543 33433221 12355678899999999999998 685 678999999
Q ss_pred HHhCCEEEEeCCcchHHHHHHHHHHHHHhcccc-cCcCceEEecC-CChhhhhhcCCCCccEEEeecCHHHHHHHHhhcC
Q 005041 427 IRSGNGLLLKGGKEAMRSNAILHKVITSAIPDT-VGEKLIGLVTS-REEIPDLLKLDDVIDLVIPRGSNKLVSQIKESTK 504 (717)
Q Consensus 427 LaaGN~vVlKps~~tp~t~~~l~~~~~~al~~a-lP~gvv~vv~~-~~~~~~~l~~~~~v~~v~fTGs~~~g~~i~~~a~ 504 (717)
|++||+||+||||.||+|+.++++++.+ + +|+|+||+|+| +.++++.|..||+||+|+||||+++|+.|++.+.
T Consensus 170 LaaGN~VVlKps~~tp~~~~~l~~l~~~----aGlP~gvv~vv~g~~~~~g~~L~~~p~v~~I~fTGS~~~g~~i~~~aa 245 (481)
T 3jz4_A 170 LAAGCTMVLKPASQTPFSALALAELAIR----AGVPAGVFNVVTGSAGAVGNELTSNPLVRKLSFTGSTEIGRQLMEQCA 245 (481)
T ss_dssp HHHTCEEEEECCTTSCHHHHHHHHHHHH----HTCCTTTEEECCBCTHHHHHHHHHCTTEEEEEEESCHHHHHHHHHHHT
T ss_pred HHcCCEEEEECCCCCcHHHHHHHHHHHH----hCcCCCeEEEEeCCChHHHHHHHhCCCcCEEEEECCHHHHHHHHHHHh
Confidence 9999999999999999999999999987 7 99999999996 5678888889999999999999999999998874
Q ss_pred ---CCEEEecCCcceEEEcCCCCHHHHHHHHHhhccCCCc-cccccceEEEcCcccChhhHHHHHHHHHHcC--------
Q 005041 505 ---IPVLGHADGICHVYVDKSANLDVAKNIVIDAKIDYPA-ACNAMETLLVHKDLACNGALNELVVELQHEG-------- 572 (717)
Q Consensus 505 ---~p~~lElGGk~p~iV~~dADl~~A~~~i~~~~~~n~g-~C~a~~rv~V~~~i~d~~f~~~l~~~~~~~~-------- 572 (717)
||+++|||||||+||++|||+|.|++.+++|+|.|+| +|+|++|+|||+++| |+|+++|+++++++.
T Consensus 246 ~~~~~v~lElGGk~p~iV~~dADl~~Aa~~i~~~~~~n~GQ~C~a~~rvlV~~~i~-d~f~~~l~~~~~~~~~G~p~~~~ 324 (481)
T 3jz4_A 246 KDIKKVSLELGGNAPFIVFDDADLDKAVEGALASKFRNAGQTCVCANRLYVQDGVY-DRFAEKLQQAMSKLHIGDGLDNG 324 (481)
T ss_dssp TTTCEEEEECCCCEEEEECTTSCHHHHHHHHHHHHHGGGGCSTTSEEEEEEEGGGH-HHHHHHHHHHHTTCCBSCTTSTT
T ss_pred hcCCceEEecCCCCeEEEcCCCCHHHHHHHHHHHHHHhCCCcccCCcEEEEeHHHH-HHHHHHHHHHHHhccCCCCccCc
Confidence 9999999999999999999999999999999999987 999999999999999 899999999987652
Q ss_pred --------------------------ceE-ecCccc--ccc-c-c-C-----CCCccccccccCceEEEEEeCCHHHHHH
Q 005041 573 --------------------------VGL-FGGPRA--SKL-L-Q-I-----PETRLFHHEYNSMVCTVEIVDDVRAAID 615 (717)
Q Consensus 573 --------------------------~~~-~g~~~~--~~~-~-p-i-----~~~~~~~eE~FGPVl~v~~~~~~deAi~ 615 (717)
+++ .|+... .++ + | | ++|++++||+||||++|++|+|+||||+
T Consensus 325 ~~~gpli~~~~~~~v~~~i~~a~~~Ga~v~~gg~~~~~~g~~~~Ptvl~~v~~~~~i~~eEiFGPVl~v~~~~~~deAi~ 404 (481)
T 3jz4_A 325 VTIGPLIDEKAVAKVEEHIADALEKGARVVCGGKAHERGGNFFQPTILVDVPANAKVSKEETFGPLAPLFRFKDEADVIA 404 (481)
T ss_dssp CCBCCCSCHHHHHHHHHHHHHHHHTTCEEEECCSBCTTCTTCBCCEEEESCCTTSGGGTSCCCSSEEEEEEECCHHHHHH
T ss_pred CccccccCHHHHHHHHHHHHHHHHCCCEEEeCCcccCCCCceeccEEEecCCCCcccccccccCceEEEEEECCHHHHHH
Confidence 122 243321 223 3 5 2 4689999999999999999999999999
Q ss_pred HHHhcCCCceeEEEecCHHHHHHHHhcCCeeeEEEcCCCCCCCCCccCCccccccccCcccccccchhhcccEEEEEEec
Q 005041 616 HIHQHGSAHTDCIVAEDQKVAETFLCQVDSAAVFHNASTRFCDGARFGLGAEVGISTSRIHARGPVGVEGLLTTRWILRG 695 (717)
Q Consensus 616 ~aN~~~~GL~a~I~t~d~~~a~~~~~~l~~G~v~iN~~~~~~~~~pfG~g~~~G~~~~~~~~~g~~g~~~ft~~k~v~~~ 695 (717)
++|+++|||++||||+|.++++++++++++|+|+||++....+..||||.++||+| +++|++|+++||+.|+|+++
T Consensus 405 ~aN~~~~gL~a~v~t~d~~~a~~~~~~l~~G~v~iN~~~~~~~~~PfGG~k~SG~G----~~~g~~g~~~~t~~k~v~~~ 480 (481)
T 3jz4_A 405 QANDTEFGLAAYFYARDLSRVFRVGEALEYGIVGINTGIISNEVAPFGGIKASGLG----REGSKYGIEDYLEIKYMCIG 480 (481)
T ss_dssp HHHCSSCCSEEEEECCBHHHHHHHHHHCCCSEEEESCSCCCCSSSCBCCSGGGEES----CBSHHHHHHTTEEEEEEEEE
T ss_pred HHhcCCCCceEEEECCCHHHHHHHHHhCCeeeEEECCCCCCCCCCCcCCcccCcCC----CCchHHHHHHhhceeEEEEe
Confidence 99999999999999999999999999999999999998777788999999999996 45799999999999999874
No 24
>3b4w_A Aldehyde dehydrogenase; RV0223C-NAD complex, structural genomics, PSI-2, protein STR initiative; HET: NAD GOL; 1.80A {Mycobacterium tuberculosis}
Probab=100.00 E-value=2.9e-78 Score=681.54 Aligned_cols=397 Identities=15% Similarity=0.137 Sum_probs=346.5
Q ss_pred HHHhcCCcceEEEecCCcccccHhhHHHHHHHHHHHHH--HHhcCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHH
Q 005041 270 IKVLEGKRVGTLFHRDAHLWVKQVGAREMAVAARESSR--RLQALQSQDRRKILLDVADALEANESLIKVENEADVAAAQ 347 (717)
Q Consensus 270 ~~~~tg~~iGT~i~a~~~~~~~~~~v~~av~~A~~A~~--~w~~~~~~~R~~~L~~~a~~l~~~~~el~~~~~~d~~~~~ 347 (717)
.+|.+++.++++..++ .+|+++++++|++||+ .|+++|.++|.++|++++++|++|+++|++++++|++++.
T Consensus 29 ~nP~tg~~i~~~~~~~------~~~v~~av~~A~~A~~~g~w~~~~~~~R~~~L~~~a~~l~~~~~ela~~~~~e~Gk~~ 102 (495)
T 3b4w_A 29 RCPATGEYVGKVPMAA------AADVDAAVAAARAAFDNGPWPSTPPHERAAVIAAAVKMLAERKDLFTKLLAAETGQPP 102 (495)
T ss_dssp ECTTTCCEEEEEECCC------HHHHHHHHHHHHHHHHHSSTTTSCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHCCCH
T ss_pred ECCCCCCEEEEEeCCC------HHHHHHHHHHHHHhcccCccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCH
Confidence 4578999999998888 8999999999999999 8999999999999999999999999999999988876543
Q ss_pred hhchhHHHHHHhhcChhHHHHHHHHHHHHhccccc-ccccccccccCCCceEEEeecceeEEEEEcCC-Cch-hHHHHHH
Q 005041 348 EAGYAKSLVSRLALKPGKISSLAKSIRILADMEEP-IGQILKRTELADGLILEKTSCPLGVLLIVFES-RPD-ALVQIAS 424 (717)
Q Consensus 348 ~~g~~~a~~~~~~~~~~~i~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~PlGVV~~I~p~-~P~-~~~~~~~ 424 (717)
. ++. ..|+...++.++++++..+. .+...+. +.+...+++|+|+|||++|+|| ||. +.+++++
T Consensus 103 ~----ea~-------~~Ev~~~~~~~~~~a~~~~~~~g~~~~~---~~~~~~~~~~~P~GVv~~I~PwN~P~~~~~~~~~ 168 (495)
T 3b4w_A 103 T----IIE-------TMHWMGSMGAMNYFAGAADKVTWTETRT---GSYGQSIVSREPVGVVGAIVAWNVPLFLAVNKIA 168 (495)
T ss_dssp H----HHH-------HTTTHHHHHHHHHHHTCGGGSCSEEEEE---ETTEEEEEEEEECCEEEEECCSSSHHHHHHHHHH
T ss_pred H----HHH-------HHHHHHHHHHHHHHHHHHHHhcCCcccC---CCCceEEEEEccCceEEEECCCcchHHHHHHHHH
Confidence 1 221 13567778888888865543 3333221 2344568899999999999998 685 6779999
Q ss_pred HHHHhCCEEEEeCCcchHHHHHHHHHHHHHhcccc-cCcCceEEecCCChhhhhhcCCCCccEEEeecCHHHHHHHHhhc
Q 005041 425 LAIRSGNGLLLKGGKEAMRSNAILHKVITSAIPDT-VGEKLIGLVTSREEIPDLLKLDDVIDLVIPRGSNKLVSQIKEST 503 (717)
Q Consensus 425 ~ALaaGN~vVlKps~~tp~t~~~l~~~~~~al~~a-lP~gvv~vv~~~~~~~~~l~~~~~v~~v~fTGs~~~g~~i~~~a 503 (717)
|||++||+||+||||.||+|+.++++++.+ + ||+|++|+|+|+.++++.|..||+||+|+||||+++||.|++.+
T Consensus 169 ~ALaaGN~VVlKps~~tp~t~~~l~~l~~e----aGlP~gvv~vv~g~~~~g~~L~~~~~v~~I~FTGS~~~G~~i~~~a 244 (495)
T 3b4w_A 169 PALLAGCTIVLKPAAETPLTANALAEVFAE----VGLPEGVLSVVPGGIETGQALTSNPDIDMFTFTGSSAVGREVGRRA 244 (495)
T ss_dssp HHHHTTCEEEEECBTTSCHHHHHHHHHHHH----TTCCTTSEEECCBSHHHHHHHTTCTTCCEEEEESCHHHHHHHHHHH
T ss_pred HHHHcCCEEEEecCCccHHHHHHHHHHHHH----hCCCcCeEEEEeCCHHHHHHHHhCCCcCEEEEeCCHHHHHHHHHHh
Confidence 999999999999999999999999999997 7 99999999998556788888899999999999999999999877
Q ss_pred ---CCCEEEecCCcceEEEcCCCCHHHHHHHHHhhccCCCc-cccccceEEEcCcccChhhHHHHHHHHHHcC-------
Q 005041 504 ---KIPVLGHADGICHVYVDKSANLDVAKNIVIDAKIDYPA-ACNAMETLLVHKDLACNGALNELVVELQHEG------- 572 (717)
Q Consensus 504 ---~~p~~lElGGk~p~iV~~dADl~~A~~~i~~~~~~n~g-~C~a~~rv~V~~~i~d~~f~~~l~~~~~~~~------- 572 (717)
.||+++|||||||+||++|||+|.|++.+++++|.|+| +|+|++|+|||+++| |+|+++|+++++++.
T Consensus 245 a~~l~pv~lELGGk~p~iV~~dADl~~Aa~~i~~~~~~n~GQ~C~a~~rvlV~~~i~-d~f~~~l~~~~~~~~~g~p~~~ 323 (495)
T 3b4w_A 245 AEMLKPCTLELGGKSAAIILEDVDLAAAIPMMVFSGVMNAGQGCVNQTRILAPRSRY-DEIVAAVTNFVTALPVGPPSDP 323 (495)
T ss_dssp HHTTCCEEEECCCCEEEEECTTCCHHHHHHHHHHHHHGGGGCCTTCEEEEEEEGGGH-HHHHHHHHHHHHHSCBCCTTCT
T ss_pred hhcCCceeecCCCcceEEECCCCCHHHHHHHHHHHHhhcCCCCCCCCeEEEEcccHH-HHHHHHHHHHHHhcCCCCCccC
Confidence 59999999999999999999999999999999999987 999999999999999 899999999987752
Q ss_pred ---------------------------ceE-ecCccc----cccc--c-C-----CCCccccccccCceEEEEEeCCHHH
Q 005041 573 ---------------------------VGL-FGGPRA----SKLL--Q-I-----PETRLFHHEYNSMVCTVEIVDDVRA 612 (717)
Q Consensus 573 ---------------------------~~~-~g~~~~----~~~~--p-i-----~~~~~~~eE~FGPVl~v~~~~~~de 612 (717)
+++ .|+... .++| | | ++|++++||+||||++|++|+|+||
T Consensus 324 ~~~~gpli~~~~~~rv~~~i~~a~~~Ga~~~~gG~~~~~~~~g~~~~PTvl~~v~~~~~i~~eEiFGPVl~v~~~~~~de 403 (495)
T 3b4w_A 324 AAQIGPLISEKQRTRVEGYIAKGIEEGARLVCGGGRPEGLDNGFFIQPTVFADVDNKMTIAQEEIFGPVLAIIPYDTEED 403 (495)
T ss_dssp TCCBCCCSCHHHHHHHHHHHHHHHHTTCEEEECCSCCTTCTTSCCCCCEEEESCCTTSHHHHSCCCSSEEEEEEESSHHH
T ss_pred CCccCCCcCHHHHHHHHHHHHHHHhCCCEEEecCcccccccCCceeCCEEecCCCCCChhhhcccccceEEEEecCCHHH
Confidence 233 244432 2333 5 2 3688999999999999999999999
Q ss_pred HHHHHHhcCCCceeEEEecCHHHHHHHHhcCCeeeEEEcCCCCCCCCCccCCccccccccCcccccccchhhcccEEEEE
Q 005041 613 AIDHIHQHGSAHTDCIVAEDQKVAETFLCQVDSAAVFHNASTRFCDGARFGLGAEVGISTSRIHARGPVGVEGLLTTRWI 692 (717)
Q Consensus 613 Ai~~aN~~~~GL~a~I~t~d~~~a~~~~~~l~~G~v~iN~~~~~~~~~pfG~g~~~G~~~~~~~~~g~~g~~~ft~~k~v 692 (717)
||+++|+++|||++||||+|.++++++++++++|+|+||++. ..+.+||||.+.||+| +++|++|+++||+.|+|
T Consensus 404 Ai~~aN~~~~gL~a~v~t~d~~~a~~~~~~l~aG~V~iN~~~-~~~~~PfGG~k~SG~G----r~~G~~gl~~~~~~k~v 478 (495)
T 3b4w_A 404 AIAIANDSVYGLAGSVWTTDVPKGIKISQQIRTGTYGINWYA-FDPGSPFGGYKNSGIG----RENGPEGVEHFTQQKSV 478 (495)
T ss_dssp HHHHHHCSSCCSCCEEECSCHHHHHHHHHHSCCSCCEESSCC-CCTTSCBCCSGGGEES----CBSHHHHHHTTEEEEEE
T ss_pred HHHHHhcCCCCeEEEEECCCHHHHHHHHHhCCEeEEEECCCC-CCCCCCCCCCCCCCcC----ccchHHHHHHhcceeEE
Confidence 999999999999999999999999999999999999999977 6678999999999986 35799999999999999
Q ss_pred EecC
Q 005041 693 LRGN 696 (717)
Q Consensus 693 ~~~~ 696 (717)
.++.
T Consensus 479 ~~~~ 482 (495)
T 3b4w_A 479 LLPM 482 (495)
T ss_dssp ECCT
T ss_pred EEcc
Confidence 8864
No 25
>1bxs_A Aldehyde dehydrogenase; retinal, class 1, tetramer, NAD, cytosolic, oxidoreductase; HET: NAD; 2.35A {Ovis aries} SCOP: c.82.1.1 PDB: 1o9j_A* 1bi9_A*
Probab=100.00 E-value=2.7e-78 Score=682.06 Aligned_cols=398 Identities=16% Similarity=0.154 Sum_probs=345.2
Q ss_pred HHHhcCCcceEEEecCCcccccHhhHHHHHHHHHHHHH---HHhcCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHH
Q 005041 270 IKVLEGKRVGTLFHRDAHLWVKQVGAREMAVAARESSR---RLQALQSQDRRKILLDVADALEANESLIKVENEADVAAA 346 (717)
Q Consensus 270 ~~~~tg~~iGT~i~a~~~~~~~~~~v~~av~~A~~A~~---~w~~~~~~~R~~~L~~~a~~l~~~~~el~~~~~~d~~~~ 346 (717)
.+|.+++.++++..++ .+|+++++++|++||+ .|+++|.++|.++|++++++|++|+++|++++++|++++
T Consensus 41 ~nP~tg~~i~~~~~~~------~~~v~~av~~A~~A~~~~~~w~~~~~~~R~~~L~~~a~~l~~~~~ela~~~~~e~Gk~ 114 (501)
T 1bxs_A 41 FNPATEEKLCEVEEGD------KEDVDKAVKAARQAFQIGSPWRTMDASERGRLLNKLADLIERDRLLLATMEAMNGGKL 114 (501)
T ss_dssp ECTTTCCEEEEEECCC------HHHHHHHHHHHHHHTSTTSHHHHSCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHTCC
T ss_pred ECCCCCCEEEEEeCCC------HHHHHHHHHHHHHHhhcccchhhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 4578999999998888 8999999999999999 999999999999999999999999999999999887654
Q ss_pred HhhchhHHHHHHhhcChhHHHHHHHHHHHHhccccc-ccccccccccCCCceEEEeecceeEEEEEcCC-Cch-hHHHHH
Q 005041 347 QEAGYAKSLVSRLALKPGKISSLAKSIRILADMEEP-IGQILKRTELADGLILEKTSCPLGVLLIVFES-RPD-ALVQIA 423 (717)
Q Consensus 347 ~~~g~~~a~~~~~~~~~~~i~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~PlGVV~~I~p~-~P~-~~~~~~ 423 (717)
.. ++. ..|+...++.++++++..+. .+...+. ..+...+++|+|+|||++|+|| ||. +.++++
T Consensus 115 ~~----e~~-------~~ev~~~~~~~~~~a~~~~~~~g~~~~~---~~~~~~~~~~~P~GVV~~I~PwN~P~~~~~~~~ 180 (501)
T 1bxs_A 115 FS----NAY-------LMDLGGCIKTLRYCAGWADKIQGRTIPM---DGNFFTYTRSEPVGVCGQIIPWNFPLLMFLWKI 180 (501)
T ss_dssp HH----HHH-------HTHHHHHHHHHHHHHHHGGGCCEEEECC---SSSEEEEEEEEECCEEEEECCSSSHHHHHHHHH
T ss_pred HH----HHH-------HHHHHHHHHHHHHHHHHHHHhhCCeeec---cCCcceeEEecCCceEEEECCCcchHHHHHHHH
Confidence 31 221 23667777778877755432 2332221 2345668899999999999998 685 677999
Q ss_pred HHHHHhCCEEEEeCCcchHHHHHHHHHHHHHhcccc-cCcCceEEecC-CChhhhhhcCCCCccEEEeecCHHHHHHHHh
Q 005041 424 SLAIRSGNGLLLKGGKEAMRSNAILHKVITSAIPDT-VGEKLIGLVTS-REEIPDLLKLDDVIDLVIPRGSNKLVSQIKE 501 (717)
Q Consensus 424 ~~ALaaGN~vVlKps~~tp~t~~~l~~~~~~al~~a-lP~gvv~vv~~-~~~~~~~l~~~~~v~~v~fTGs~~~g~~i~~ 501 (717)
+|||++||+||+||||.||+|+.++++++.+ + ||+|++|+|+| +.++++.|..||+||+|+||||+++||.|++
T Consensus 181 a~ALaaGN~VVlKps~~tp~t~~~l~~l~~~----aGlP~gv~~vv~g~~~~~g~~L~~~~~v~~I~FTGS~~~G~~i~~ 256 (501)
T 1bxs_A 181 GPALSCGNTVVVKPAEQTPLTALHMGSLIKE----AGFPPGVVNIVPGYGPTAGAAISSHMDVDKVAFTGSTEVGKLIKE 256 (501)
T ss_dssp HHHHHTTCEEEEECCTTCCHHHHHHHHHHHH----HTCCTTSEEECCSCTTTHHHHHHTCTTCSEEEEESCHHHHHHHHH
T ss_pred HHHHHcCCeeeccCCCccHHHHHHHHHHHHH----hCCCcceEEEEecCchHHHHHHHhCCCcCEEEEECCHHHHHHHHH
Confidence 9999999999999999999999999999987 7 99999999996 6678888889999999999999999999987
Q ss_pred hcC----CCEEEecCCcceEEEcCCCCHHHHHHHHHhhccCCCc-cccccceEEEcCcccChhhHHHHHHHHHHcC----
Q 005041 502 STK----IPVLGHADGICHVYVDKSANLDVAKNIVIDAKIDYPA-ACNAMETLLVHKDLACNGALNELVVELQHEG---- 572 (717)
Q Consensus 502 ~a~----~p~~lElGGk~p~iV~~dADl~~A~~~i~~~~~~n~g-~C~a~~rv~V~~~i~d~~f~~~l~~~~~~~~---- 572 (717)
.+. ||+++|||||||+||++|||+|.|++.+++++|.|+| +|+|++|+|||+++| |+|+++|+++++++.
T Consensus 257 ~aa~~~l~~v~lELGGk~p~iV~~dADl~~Aa~~i~~~~~~n~GQ~C~a~~rvlV~~~i~-d~f~~~l~~~~~~~~~G~p 335 (501)
T 1bxs_A 257 AAGKSNLKRVSLELGGKSPCIVFADADLDNAVEFAHQGVFYHQGQCCIAASRLFVEESIY-DEFVRRSVERAKKYVLGNP 335 (501)
T ss_dssp HHHHTTCCEEEEECCCCCEEEECTTSCHHHHHHHHHHHHHTTTTCCTTCCCEEEEEHHHH-HHHHHHHHHHHTCCCBSCT
T ss_pred HhhhccCCcEEEecCCcCeEEECCCCCHHHHHHHHHHHHHhcCCCCCCCCCEEEEchhHH-HHHHHHHHHHHHhcCCCCC
Confidence 753 9999999999999999999999999999999999987 999999999999999 899999999887642
Q ss_pred ------------------------------ceEe-cCccc--cccc--c-C-----CCCccccccccCceEEEEEeCCHH
Q 005041 573 ------------------------------VGLF-GGPRA--SKLL--Q-I-----PETRLFHHEYNSMVCTVEIVDDVR 611 (717)
Q Consensus 573 ------------------------------~~~~-g~~~~--~~~~--p-i-----~~~~~~~eE~FGPVl~v~~~~~~d 611 (717)
+++. |+... .++| | | ++|++++||+||||++|++|+|+|
T Consensus 336 ~~~~~~~Gpli~~~~~~rv~~~i~~a~~~Ga~~~~gG~~~~~~g~~~~PTvl~~v~~~~~i~~eEiFGPVl~v~~~~~~d 415 (501)
T 1bxs_A 336 LTPGVSQGPQIDKEQYEKILDLIESGKKEGAKLECGGGPWGNKGYFIQPTVFSDVTDDMRIAKEEIFGPVQQIMKFKSLD 415 (501)
T ss_dssp TSTTCCBCCCSCHHHHHHHHHHHHHHHHTTCEECSCCSEECSSSCEECCEEEESCCTTSHHHHSCCCSSEEEEEEECCHH
T ss_pred cccCCccCCCcCHHHHHHHHHHHHHHHhCCCEEEeCCccCCCCCCeeCCEEEecCCCCCHHHhcccccceEEEEEeCCHH
Confidence 2222 44321 2333 5 3 358999999999999999999999
Q ss_pred HHHHHHHhcCCCceeEEEecCHHHHHHHHhcCCeeeEEEcCCCCCCCCCccCCccccccccCcccccccchhhcccEEEE
Q 005041 612 AAIDHIHQHGSAHTDCIVAEDQKVAETFLCQVDSAAVFHNASTRFCDGARFGLGAEVGISTSRIHARGPVGVEGLLTTRW 691 (717)
Q Consensus 612 eAi~~aN~~~~GL~a~I~t~d~~~a~~~~~~l~~G~v~iN~~~~~~~~~pfG~g~~~G~~~~~~~~~g~~g~~~ft~~k~ 691 (717)
|||+++|+++|||++||||+|.++++++++++++|+|+||++....+.+||||.+.||+| +++|++|+++|++.|+
T Consensus 416 eAi~~aN~~~~gL~a~v~t~d~~~a~~~~~~l~aG~V~iN~~~~~~~~~pfGG~k~SG~G----~~~G~~~l~~f~~~K~ 491 (501)
T 1bxs_A 416 DVIKRANNTFYGLSAGIFTNDIDKAITVSSALQSGTVWVNCYSVVSAQCPFGGFKMSGNG----RELGEYGFHEYTEVKT 491 (501)
T ss_dssp HHHHHHHCSSCCSEEEEECSBHHHHHHHHHHSCCSEEEESCCCCCCTTSCBCCSGGGEES----CBSHHHHHHTTEEEEE
T ss_pred HHHHHHhcCCCCeeEEEEcCCHHHHHHHHHhcCeeEEEECCCCCCCCCCCCCCcCcCCcC----ccchHHHHHHhhCeeE
Confidence 999999999999999999999999999999999999999998766678999999999886 3579999999999999
Q ss_pred EEecC
Q 005041 692 ILRGN 696 (717)
Q Consensus 692 v~~~~ 696 (717)
|.++.
T Consensus 492 v~~~~ 496 (501)
T 1bxs_A 492 VTIKI 496 (501)
T ss_dssp EEEEC
T ss_pred EEEcc
Confidence 98853
No 26
>3qan_A 1-pyrroline-5-carboxylate dehydrogenase 1; proline oxidation, redox control, apoptosis, NAD binding, oxidoreductase, PSI-biology; 1.95A {Bacillus halodurans} PDB: 3rjl_A
Probab=100.00 E-value=4.5e-78 Score=685.28 Aligned_cols=414 Identities=18% Similarity=0.202 Sum_probs=345.4
Q ss_pred HHHHhc-CCcceEEEecCCcccccHhhHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHH
Q 005041 269 IIKVLE-GKRVGTLFHRDAHLWVKQVGAREMAVAARESSRRLQALQSQDRRKILLDVADALEANESLIKVENEADVAAAQ 347 (717)
Q Consensus 269 l~~~~t-g~~iGT~i~a~~~~~~~~~~v~~av~~A~~A~~~w~~~~~~~R~~~L~~~a~~l~~~~~el~~~~~~d~~~~~ 347 (717)
+.+|.+ ++.++++..++ .+|+++|+++|++||+.|++++.++|.++|++++++|++|+++|++++++|+|++.
T Consensus 55 ~~nP~t~~~~i~~~~~~~------~~dv~~av~aA~~A~~~w~~~~~~~R~~~L~~~a~~l~~~~~ela~~~~~e~Gk~~ 128 (538)
T 3qan_A 55 SWNPARKDQLVGSVSKAN------QDLAEKAIQSADEAFQTWRNVNPEERANILVKAAAIIRRRKHEFSAWLVHEAGKPW 128 (538)
T ss_dssp EECSSSTTCEEEEEECBC------HHHHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHTCCCH
T ss_pred EECCCCCCcEEEEEcCCC------HHHHHHHHHHHHHHHHhhccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCH
Confidence 467889 99999999888 89999999999999999999999999999999999999999999999988776542
Q ss_pred hhchhHHHHHHhhcChhHHHHHHHHHHHHhcc-cc-cccccccccccCCCceEEEeecceeEEEEEcCC-Cch-hHHHHH
Q 005041 348 EAGYAKSLVSRLALKPGKISSLAKSIRILADM-EE-PIGQILKRTELADGLILEKTSCPLGVLLIVFES-RPD-ALVQIA 423 (717)
Q Consensus 348 ~~g~~~a~~~~~~~~~~~i~~~~~~~~~~~~~-~~-~~~~~~~~~~~~~~~~~~~~~~PlGVV~~I~p~-~P~-~~~~~~ 423 (717)
.++ ..|+..+++.++++++. .+ ..++..+. ..+...+++++|+|||++|+|| ||. +.++++
T Consensus 129 ----~ea--------~~Ev~~~~~~l~~~a~~~~~~~~~~~~~~---~~~~~~~~~~~P~GVV~~I~PwN~P~~~~~~~~ 193 (538)
T 3qan_A 129 ----KEA--------DADTAEAIDFLEYYARQMIELNRGKEILS---RPGEQNRYFYTPMGVTVTISPWNFALAIMVGTA 193 (538)
T ss_dssp ----HHH--------HHHHHHHHHHHHHHHHHHHHHHTCBCCCC---CTTEEEEEEEEECCEEEEECCSTTTTHHHHHHH
T ss_pred ----HHH--------HHHHHHHHHHHHHHHHHHHHhcCCeeecc---cCCcceeeecCCCcEEEEECCCchHHHHHHHHH
Confidence 122 12566777777777654 22 22333221 1355678899999999999998 685 678999
Q ss_pred HHHHHhCCEEEEeCCcchHHHHHHHHHHHHHhcccc-cCcCceEEecC-CChhhhhhcCCCCccEEEeecCHHHHHHHHh
Q 005041 424 SLAIRSGNGLLLKGGKEAMRSNAILHKVITSAIPDT-VGEKLIGLVTS-REEIPDLLKLDDVIDLVIPRGSNKLVSQIKE 501 (717)
Q Consensus 424 ~~ALaaGN~vVlKps~~tp~t~~~l~~~~~~al~~a-lP~gvv~vv~~-~~~~~~~l~~~~~v~~v~fTGs~~~g~~i~~ 501 (717)
+|||++||+||+||||.||+|+.+|++++.+ + ||+|+||+|+| +.++++.|..||+||+|+||||+++||.|++
T Consensus 194 a~ALaaGN~VVlKps~~tp~ta~~l~~l~~e----aGlP~gvv~vv~g~~~~~g~~L~~~p~v~~I~FTGS~~~G~~i~~ 269 (538)
T 3qan_A 194 VAPIVTGNTVVLKPASTTPVVAAKFVEVLED----AGLPKGVINYVPGSGAEVGDYLVDHPKTSLITFTGSKDVGVRLYE 269 (538)
T ss_dssp HHHHHTTCEEEEECCTTSHHHHHHHHHHHHH----TTCCTTSEEECCBCTTTTHHHHHHCTTEEEEEEESCHHHHHHHHH
T ss_pred HHHHHcCCEEEEECCCccHHHHHHHHHHHHH----hCCCCCeEEEEecCCHHHHHHHHhCCCcCEEEEECCHHHHHHHHH
Confidence 9999999999999999999999999999987 7 99999999996 6678888889999999999999999999998
Q ss_pred hc---------CCCEEEecCCcceEEEcCCCCHHHHHHHHHhhccCCCc-cccccceEEEcCcccChhhHHHHHHHHHHc
Q 005041 502 ST---------KIPVLGHADGICHVYVDKSANLDVAKNIVIDAKIDYPA-ACNAMETLLVHKDLACNGALNELVVELQHE 571 (717)
Q Consensus 502 ~a---------~~p~~lElGGk~p~iV~~dADl~~A~~~i~~~~~~n~g-~C~a~~rv~V~~~i~d~~f~~~l~~~~~~~ 571 (717)
.+ .||+++|||||||+||++|||+|.|++.+++++|.|+| +|+|++|+|||+++| |+|+++|+++++++
T Consensus 270 ~aa~~~~~~~~lkpv~lELGGk~p~IV~~dADl~~Aa~~i~~~~f~n~GQ~C~a~~rvlV~~~i~-d~f~~~l~~~~~~~ 348 (538)
T 3qan_A 270 RAAVVRPGQNHLKRVIVEMGGKDTVVVDRDADLDLAAESILVSAFGFSGQKCSAGSRAVIHKDVY-DEVLEKTVALAKNL 348 (538)
T ss_dssp HHTSCCTTCCSCCEEEEECCCCCEEEECTTSCHHHHHHHHHHHHHGGGGCSTTCCCEEEEETTTH-HHHHHHHHHHHTTC
T ss_pred HhhhccccccccccEEEecCCCCceEECCCCCHHHHHHHHHHHHHhcCCCCCccCceeEEehHHH-HHHHHHHHHHHHhc
Confidence 76 58999999999999999999999999999999999987 999999999999999 89999999998765
Q ss_pred Cc---------------------------------eE-ecCccc--cccc--c-C-----CCCccccccccCceEEEEEe
Q 005041 572 GV---------------------------------GL-FGGPRA--SKLL--Q-I-----PETRLFHHEYNSMVCTVEIV 607 (717)
Q Consensus 572 ~~---------------------------------~~-~g~~~~--~~~~--p-i-----~~~~~~~eE~FGPVl~v~~~ 607 (717)
.+ ++ .|+... .++| | | ++|++++||+||||++|++|
T Consensus 349 ~vG~p~~~~~~~Gpli~~~~~~rv~~~i~~a~~~G~~~~gG~~~~~~g~~~~PTvl~~v~~~~~i~~eEiFGPVl~V~~~ 428 (538)
T 3qan_A 349 TVGDPTNRDNYMGPVIDEKAFEKIMSYIEIGKKEGRLMTGGEGDSSTGFFIQPTIIADLDPEAVIMQEEIFGPVVAFSKA 428 (538)
T ss_dssp CBSCTTSTTCSBCCCSCHHHHHHHHHHHHHHHHHSEEEECCCEECSSSCEECCEEEESCCTTSHHHHSCCCSSEEEEEEE
T ss_pred cCCCCCCCCCCCcCccCHHHHHHHHHHHHHHHHCCeEEeCCCcCCCCCceeCCeeeecCCCCChhhCCCcCCcEEEEEEe
Confidence 21 11 233221 2333 5 2 46899999999999999999
Q ss_pred CCHHHHHHHHHhcCCCceeEEEecCHHHHHHHHhcCCeeeEEEc-CCCCC-CCCCccCCccccccccCcccccccchhhc
Q 005041 608 DDVRAAIDHIHQHGSAHTDCIVAEDQKVAETFLCQVDSAAVFHN-ASTRF-CDGARFGLGAEVGISTSRIHARGPVGVEG 685 (717)
Q Consensus 608 ~~~deAi~~aN~~~~GL~a~I~t~d~~~a~~~~~~l~~G~v~iN-~~~~~-~~~~pfG~g~~~G~~~~~~~~~g~~g~~~ 685 (717)
+|+||||+++|+++|||++||||+|.++++++++++++|+|+|| .++.. .+.+||||.++||+|. +++|++|+++
T Consensus 429 ~~~deAi~~aN~~~~gLaa~v~t~d~~~a~~~~~~l~aG~V~iN~~~~~~~~~~~PfGG~k~SG~G~---~~~G~~gl~~ 505 (538)
T 3qan_A 429 NDFDHALEIANNTEYGLTGAVITRNRAHIEQAKREFHVGNLYFNRNCTGAIVGYHPFGGFKMSGTDS---KAGGPDYLAL 505 (538)
T ss_dssp SSHHHHHHHHHCSSEESEEEEECSCHHHHHHHHHHCCCSEEEESSCSCCCCTTTSCBCCEETTBSCC---CBTSTTTGGG
T ss_pred CCHHHHHHHHhcCCCCcEEEEECCCHHHHHHHHHhCCeeEEEEeCCCCCCCCCCCCcCCcCcCCCCc---ccccHHHHHH
Confidence 99999999999999999999999999999999999999999999 55554 6789999999999862 3579999999
Q ss_pred ccEEEEEEecCceee---cCCCCceeeec
Q 005041 686 LLTTRWILRGNGHVV---DGDQGVVYTHK 711 (717)
Q Consensus 686 ft~~k~v~~~~~~~~---~~~~~~~~~~~ 711 (717)
||+.|+|.++..+.. ++-----|.|.
T Consensus 506 ft~~k~v~~~~~~~~~~~~~~~~~~~~~~ 534 (538)
T 3qan_A 506 HMQAKTVSEMYAENLYFQSHHHHHHWSHP 534 (538)
T ss_dssp GEEEEEEEEEC------------------
T ss_pred hhCeEEEEEecCCccccCccccccccccc
Confidence 999999998764322 34334445554
No 27
>3lns_A Benzaldehyde dehydrogenase; oxidoreductase, NADP+, class 3 aldehyde dehyd adduct, covalent catalysis, mandelate racemase pathway; HET: ZBZ NAP; 2.50A {Pseudomonas putida} PDB: 3lv1_A*
Probab=100.00 E-value=8.5e-78 Score=672.86 Aligned_cols=405 Identities=17% Similarity=0.143 Sum_probs=331.0
Q ss_pred cchHHHHhcCCcceEEEecCCcccccHhhHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHH
Q 005041 266 MDSIIKVLEGKRVGTLFHRDAHLWVKQVGAREMAVAARESSRRLQALQSQDRRKILLDVADALEANESLIKVENEADVAA 345 (717)
Q Consensus 266 ~~~l~~~~tg~~iGT~i~a~~~~~~~~~~v~~av~~A~~A~~~w~~~~~~~R~~~L~~~a~~l~~~~~el~~~~~~d~~~ 345 (717)
.+.+.++.+++.++++...+ .+|+++++++|++||+.|+++|.++|.++|++++++|++|+++|++++++|+|+
T Consensus 7 ~~~~~~~~~~~~i~~v~~~~------~~~v~~av~~A~~A~~~w~~~~~~~R~~~L~~~a~~l~~~~~ela~~~~~e~Gk 80 (457)
T 3lns_A 7 HHHHSSGHIDDDDKHMNYLS------PAKIDSLFSAQKAYFATRATADVGFRKQSLERLKEAVINNKEALYSALAEDLGK 80 (457)
T ss_dssp ----------------CCCC------HHHHHHHHHHHHHHHHTTTTCSHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHCC
T ss_pred cccccCCCCCCeeeecCCCC------HHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhCC
Confidence 34457788999999998888 899999999999999999999999999999999999999999999999988876
Q ss_pred HHhhchhHHHHHHhhcChhHHHHHHHHHHHHhcccccccccccccccCCCceEEEeecceeEEEEEcCC-Cch-hHHHHH
Q 005041 346 AQEAGYAKSLVSRLALKPGKISSLAKSIRILADMEEPIGQILKRTELADGLILEKTSCPLGVLLIVFES-RPD-ALVQIA 423 (717)
Q Consensus 346 ~~~~g~~~a~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~PlGVV~~I~p~-~P~-~~~~~~ 423 (717)
+. .++...++..+...++++++.++.|... +...... ...+...+++++|+|||++|+|| ||. +.++++
T Consensus 81 ~~----~ea~~~ev~~~~~~~~~~a~~~~~~~~~-~~~~~~~----~~~~~~~~~~~~P~GVv~~I~PwN~P~~~~~~~~ 151 (457)
T 3lns_A 81 PK----DVVDLAEIGAVLHEIDFALAHLDEWVAP-VSVPSPD----IIAPSECYVVQEPYGVTYIIGPFNYPVNLTLTPL 151 (457)
T ss_dssp CH----HHHHHHTHHHHHHHHHHHHHHHHHHTSC-EEECCCG----GGCSCEEEEEEEECCEEEEECCSSSTTHHHHHHH
T ss_pred CH----HHHHHHHHHHHHHHHHHHHHHHHHhhcc-ccccccc----cCCCcceEEEeecceEEEEECCCcchHHHHHHHH
Confidence 53 2333223334445566666666665431 1111110 01234678899999999999998 685 678999
Q ss_pred HHHHHhCCEEEEeCCcchHHHHHHHHHHHHHhcccccCcCceEEecCCChhhhhhcCCCCccEEEeecCHHHHHHHHhhc
Q 005041 424 SLAIRSGNGLLLKGGKEAMRSNAILHKVITSAIPDTVGEKLIGLVTSREEIPDLLKLDDVIDLVIPRGSNKLVSQIKEST 503 (717)
Q Consensus 424 ~~ALaaGN~vVlKps~~tp~t~~~l~~~~~~al~~alP~gvv~vv~~~~~~~~~l~~~~~v~~v~fTGs~~~g~~i~~~a 503 (717)
+|||++||+||+|||+.||+|+.++++++.+ +||+|++|+|+|+.++++.|.. ++||+|+||||+++||.|++.+
T Consensus 152 ~~ALaaGN~VVlKps~~tp~t~~~l~~l~~~----alP~gvv~vv~g~~~~~~~L~~-~~vd~V~fTGS~~~G~~i~~~a 226 (457)
T 3lns_A 152 IGAIIGGNTCIIKPSETTPETSAVIEKIIAE----AFAPEYVAVIQGGRDENSHLLS-LPFDFIFFTGSPNVGKVVMQAA 226 (457)
T ss_dssp HHHHHTTCEEEEECCTTCHHHHHHHHHHHHH----HCCTTTEEECCCCHHHHHHHTT-SCCSEEEEESCHHHHHHHHHHH
T ss_pred HHHHHcCCEEEEECCCCChHHHHHHHHHHHH----hCCHhhEEEecCCHHHHHHHhc-CCCCEEEEECCHHHHHHHHHHH
Confidence 9999999999999999999999999999987 4999999999976566777766 6899999999999999999887
Q ss_pred ---CCCEEEecCCcceEEEcCCCCHHHHHHHHHhhccCCCc-cccccceEEEcCcccChhhHHHHHHHHHHc--------
Q 005041 504 ---KIPVLGHADGICHVYVDKSANLDVAKNIVIDAKIDYPA-ACNAMETLLVHKDLACNGALNELVVELQHE-------- 571 (717)
Q Consensus 504 ---~~p~~lElGGk~p~iV~~dADl~~A~~~i~~~~~~n~g-~C~a~~rv~V~~~i~d~~f~~~l~~~~~~~-------- 571 (717)
.||+++|||||||+||++|||+|.|++.+++|+|.|+| +|+|++|+|||+++| |+|+++|+++++++
T Consensus 227 a~~l~pv~lElGGk~p~iV~~dADl~~Aa~~i~~~~~~n~GQ~C~a~~rvlV~~~i~-d~f~~~l~~~~~~~~p~~~~~g 305 (457)
T 3lns_A 227 AKHLTPVVLELGGKCPLIVLPDADLDQTVNQLMFGKFINSGQTXIAPDYLYVHYSVK-DALLERLVERVKTELPEINSTG 305 (457)
T ss_dssp HTTTCCEEEECCCCEEEEECTTCCHHHHHHHHHHHHHGGGGCCTTSEEEEEEEGGGH-HHHHHHHHHHHHHHCCSTTTTC
T ss_pred hhccCceEEECCCCCCCeECCCCCHHHHHHHHHHHHHHhCCCCccCCceEEEcHHHH-HHHHHHHHHHHHhcCCCccccc
Confidence 39999999999999999999999999999999999987 999999999999999 89999999998775
Q ss_pred -------------------CceEecCccc-cccc--c-C-----CCCccccccccCceEEEEEeCCHHHHHHHHHh-cCC
Q 005041 572 -------------------GVGLFGGPRA-SKLL--Q-I-----PETRLFHHEYNSMVCTVEIVDDVRAAIDHIHQ-HGS 622 (717)
Q Consensus 572 -------------------~~~~~g~~~~-~~~~--p-i-----~~~~~~~eE~FGPVl~v~~~~~~deAi~~aN~-~~~ 622 (717)
+.-+.|+... .++| | | ++|++++||+||||++|++|+|+||||+++|+ ++|
T Consensus 306 pli~~~~~~rv~~~i~~a~~~~~~gg~~~~~g~~~~Ptvl~~v~~~~~i~~eEiFGPVl~v~~~~~~deAi~~aN~~~~~ 385 (457)
T 3lns_A 306 KLVTERQVQRLVSLLEATQGQVLVGSQADVSKRALSATVVDGVEWNDPLMSEELFGPILPVLEFDSVRTAIDQVNKHHPK 385 (457)
T ss_dssp CCSSHHHHHHHHHHHHHCCSEEEECCCEEGGGTEECCEEEESCCTTSGGGSSCCCSSEEEEEEESCHHHHHHHHHHHSCS
T ss_pred CCCCHHHHHHHHHHHHhcCCeEEeCCccCCCCceeCCEEEecCCCCChhhcCcccCcEEEEEEeCCHHHHHHHHHcCCCC
Confidence 2122355432 2333 5 2 36899999999999999999999999999999 999
Q ss_pred CceeEEEecCHHHHHHHHhcCCeeeEEEcCCCC--CCCCCccCCccccccccCcccccccchhhcccEEEEEEec
Q 005041 623 AHTDCIVAEDQKVAETFLCQVDSAAVFHNASTR--FCDGARFGLGAEVGISTSRIHARGPVGVEGLLTTRWILRG 695 (717)
Q Consensus 623 GL~a~I~t~d~~~a~~~~~~l~~G~v~iN~~~~--~~~~~pfG~g~~~G~~~~~~~~~g~~g~~~ft~~k~v~~~ 695 (717)
||++||||+|.++++++++++++|+|+||++.. ..+.+||||.+.||+| +++|.+|+++||+.|+|++.
T Consensus 386 gL~a~v~t~d~~~a~~~~~~l~aG~v~vN~~~~~~~~~~~PfGG~k~SG~G----~~~g~~~~~~f~~~k~v~~~ 456 (457)
T 3lns_A 386 PLAVYVFGKDMDVAKGIINQIQSGDAQVNGVMLHAFSPYLPFGGIGASGMG----EYHGHFSYLTFTHKKSVRIV 456 (457)
T ss_dssp CSEEEEECSCHHHHHHHHHTSCCSEEEESCCSGGGGCTTSCBCCCGGGEEC----CBSHHHHHHHTEEEEEEEEC
T ss_pred CeEEEEECCCHHHHHHHHHhCCcceEEEcCCCCCCCCCCCCcCCcCcCCCC----CCchHHHHHHhhCeeEEEeC
Confidence 999999999999999999999999999999753 3578999999999996 35699999999999999863
No 28
>2d4e_A 5-carboxymethyl-2-hydroxymuconate semialdehyde dehydrogenase; HPCC; HET: NAD; 2.10A {Thermus thermophilus}
Probab=100.00 E-value=7.4e-78 Score=681.34 Aligned_cols=399 Identities=16% Similarity=0.169 Sum_probs=349.8
Q ss_pred HHHHhcCCcceEEEecCCcccccHhhHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHh
Q 005041 269 IIKVLEGKRVGTLFHRDAHLWVKQVGAREMAVAARESSRRLQALQSQDRRKILLDVADALEANESLIKVENEADVAAAQE 348 (717)
Q Consensus 269 l~~~~tg~~iGT~i~a~~~~~~~~~~v~~av~~A~~A~~~w~~~~~~~R~~~L~~~a~~l~~~~~el~~~~~~d~~~~~~ 348 (717)
..+|.+|+.++++..++ .+|+++++++|++||+.|++++.++|.++|++++++|++|+++|++++++|++++.
T Consensus 46 ~~nP~tg~~i~~~~~~~------~~dv~~av~~A~~A~~~w~~~~~~~R~~~L~~~a~~l~~~~~ela~~~~~e~Gk~~- 118 (515)
T 2d4e_A 46 SLDPATNEVLGVAARGG------EREVDRAAKAAHEAFQRWSRTKAKERKRYLLRIAELIEKHADELAVMECLDAGQVL- 118 (515)
T ss_dssp EEETTTTEEEEEEECCC------HHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHCCCH-
T ss_pred EECCCCCCEEEEEeCCC------HHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCH-
Confidence 36788999999998888 89999999999999999999999999999999999999999999999988876542
Q ss_pred hchhHHHHHHhhcChhHHHHHHHHHHHHhccccc-ccccccccccCCCceEEEeecceeEEEEEcCC-Cch-hHHHHHHH
Q 005041 349 AGYAKSLVSRLALKPGKISSLAKSIRILADMEEP-IGQILKRTELADGLILEKTSCPLGVLLIVFES-RPD-ALVQIASL 425 (717)
Q Consensus 349 ~g~~~a~~~~~~~~~~~i~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~PlGVV~~I~p~-~P~-~~~~~~~~ 425 (717)
.++ ..|+..+++.++++++..+. .+...+.. ..+...+++|+|+|||++|+|| ||. +.+++++|
T Consensus 119 ---~ea--------~~ev~~~~~~l~~~a~~~~~~~g~~~~~~--~~~~~~~~~~~P~GVv~~I~PwN~P~~~~~~~~~~ 185 (515)
T 2d4e_A 119 ---RIV--------RAQVARAAENFAFYAEYAEHAMEDRTFPV--DRDWLYYTVRVPAGPVGIITPWNAPLMLSTWRIAP 185 (515)
T ss_dssp ---HHH--------HHHHHHHHHHHHHHHTTGGGTTCEEECCB--TTTEEEEEEEEECCCEEEECCSSSHHHHHHHHHHH
T ss_pred ---HHH--------HHHHHHHHHHHHHHHHHHHHhcCcccccC--CCCceeEEEEecCCceEEECCCCchhhhhhhhhhH
Confidence 122 13677888899998876554 34332211 2345678899999999999998 794 67899999
Q ss_pred HHHhCCEEEEeCCcchHHHHHHHHHHHHHhcccc-cCcCceEEecC-CChhhhhhcCCCCccEEEeecCHHHHHHHHhhc
Q 005041 426 AIRSGNGLLLKGGKEAMRSNAILHKVITSAIPDT-VGEKLIGLVTS-REEIPDLLKLDDVIDLVIPRGSNKLVSQIKEST 503 (717)
Q Consensus 426 ALaaGN~vVlKps~~tp~t~~~l~~~~~~al~~a-lP~gvv~vv~~-~~~~~~~l~~~~~v~~v~fTGs~~~g~~i~~~a 503 (717)
||++||+||+||||.||+|+.++++++++ + ||+|++|+|+| +.++++.|..||+||+|+||||+++||.|++.+
T Consensus 186 ALaaGN~VVlKps~~tp~t~~~l~~l~~e----aGlP~gvv~vv~g~~~~~g~~L~~~p~vd~I~FTGS~~~G~~I~~~a 261 (515)
T 2d4e_A 186 ALAFGNTVVLKPAEWSPFTATKLAEILKE----ADLPPGVFNLVQGFGEEAGAALVAHPLVPLLTLTGETETGKIVMRNA 261 (515)
T ss_dssp HHHTTCCEEEECCTTSCHHHHHHHHHHHH----TTCCTTSEEECCCCTTTHHHHHHHCTTCCEEEEESCHHHHHHHHHHH
T ss_pred HHHcCCeeeecCCCCcHHHHHHHHHHHHH----hCCCcCeEEEEeCCchHHHHHHHhCCCcCEEEEeCcHHHHHHHHHHH
Confidence 99999999999999999999999999987 7 99999999996 567888888999999999999999999999887
Q ss_pred C---CCEEEecCCcceEEEcCCCCHHHHHHHHHhhccCCCc-cccccceEEEcCcccChhhHHHHHHHHHHcCc------
Q 005041 504 K---IPVLGHADGICHVYVDKSANLDVAKNIVIDAKIDYPA-ACNAMETLLVHKDLACNGALNELVVELQHEGV------ 573 (717)
Q Consensus 504 ~---~p~~lElGGk~p~iV~~dADl~~A~~~i~~~~~~n~g-~C~a~~rv~V~~~i~d~~f~~~l~~~~~~~~~------ 573 (717)
. ||+++|||||||+||++|||+|.|++.+++++|.|+| +|+|++|+|||+++| |+|+++|+++++++.+
T Consensus 262 a~~l~~v~lELGGk~p~iV~~dADl~~Aa~~i~~~~~~n~GQ~C~a~~rvlV~~~i~-d~f~~~l~~~~~~~~~g~p~~~ 340 (515)
T 2d4e_A 262 ADHLKRLSPELGGKSPALVFADADLERALDAVVFQIFSFNGERCTASSRLLVEEKIF-EDFVGKVVERARAIRVGHPLDP 340 (515)
T ss_dssp GGGTCEEEEECCCCCEEEECTTSCHHHHHHHHHHHHHGGGGCSTTCCCEEEEEHHHH-HHHHHHHHHHHHHCCBCCTTST
T ss_pred hhcCCceEecCCCcCeEEEcCCCCHHHHHHHHHHHHHhcCCCCCCCCeEEEEehhHH-HHHHHHHHHHHhhcccCCcccc
Confidence 4 9999999999999999999999999999999999987 999999999999999 8999999999887521
Q ss_pred ----------------------------eE-ecCccc----------cccc--c-C----CCCccccccccCceEEEEEe
Q 005041 574 ----------------------------GL-FGGPRA----------SKLL--Q-I----PETRLFHHEYNSMVCTVEIV 607 (717)
Q Consensus 574 ----------------------------~~-~g~~~~----------~~~~--p-i----~~~~~~~eE~FGPVl~v~~~ 607 (717)
++ .|+... .++| | | ++|++++||+||||++|++|
T Consensus 341 ~~~~gpli~~~~~~rv~~~i~~a~~~Ga~~~~gG~~~~~~~~~~~~~~g~~~~PTvl~~~~~~~i~~eEiFGPVl~v~~~ 420 (515)
T 2d4e_A 341 ETEVGPLIHPEHLQRVLGYVEAGKREGARLLVGGERAKTSFRGEDLSRGNYLLPTVFVGENHMKIAQEEIFGPVLVAIPF 420 (515)
T ss_dssp TCSBCCCSCHHHHHHHHHHHHHHHHTTCEEEECCSBCCBCTTSCBCTTTTCBCCEEEECCTTSHHHHSCCCSSEEEEEEE
T ss_pred cCccCCCcCHHHHHHHHHHHHHHHHCCCEEEeCCccccccccccccCCCceeCCEEEeCCCCChhhhccccCCceEEEee
Confidence 22 244321 2433 5 3 35789999999999999999
Q ss_pred CCHHHHHHHHHhcCCCceeEEEecCHHHHHHHHhcCCeeeEEEcCCCCCCCCCccCCccccccccCcccccccchhhccc
Q 005041 608 DDVRAAIDHIHQHGSAHTDCIVAEDQKVAETFLCQVDSAAVFHNASTRFCDGARFGLGAEVGISTSRIHARGPVGVEGLL 687 (717)
Q Consensus 608 ~~~deAi~~aN~~~~GL~a~I~t~d~~~a~~~~~~l~~G~v~iN~~~~~~~~~pfG~g~~~G~~~~~~~~~g~~g~~~ft 687 (717)
+|+||||+++|+++|||++||||+|.++++++++++++|+|+||++....+.+||||.++||+| +++|++|+++|+
T Consensus 421 ~~~deAi~~aN~~~~gL~a~v~t~d~~~a~~~~~~l~aG~V~vN~~~~~~~~~PfGG~k~SG~G----r~~G~~gl~~~~ 496 (515)
T 2d4e_A 421 KDEEEALRKANDTKYGLAAYVFTRDLERAHRLALELEAGMVYLNSHNVRHLPTPFGGVKGSGDR----REGGTYALDFYT 496 (515)
T ss_dssp SSHHHHHHHHHCSSCCSEEEEECSBHHHHHHHHHHSCSSEEEESSSCCCCTTSCBCCSGGGBCS----CBSHHHHHHHHE
T ss_pred CCHHHHHHHHhcCCCCceEEEECCCHHHHHHHHHhCCeeEEEECCCCCCCCCCCCCCcCCCCCC----ccchHHHHHHhC
Confidence 9999999999999999999999999999999999999999999997767788999999999986 357999999999
Q ss_pred EEEEEEecC
Q 005041 688 TTRWILRGN 696 (717)
Q Consensus 688 ~~k~v~~~~ 696 (717)
+.|+|.++.
T Consensus 497 ~~K~v~~~~ 505 (515)
T 2d4e_A 497 DLKTIALPL 505 (515)
T ss_dssp EEEEEEEES
T ss_pred ceeEEEEcC
Confidence 999998864
No 29
>2w8n_A Succinate-semialdehyde dehydrogenase, mitochondrial; mitochondrion, oxidoreductase, transit peptide, disease mutation, SSA, NAD, ssadh; 2.00A {Homo sapiens} PDB: 2w8o_A 2w8p_A 2w8q_A 2w8r_A*
Probab=100.00 E-value=1.7e-77 Score=674.48 Aligned_cols=397 Identities=16% Similarity=0.178 Sum_probs=346.6
Q ss_pred HHHhcCCcceEEEecCCcccccHhhHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHhh
Q 005041 270 IKVLEGKRVGTLFHRDAHLWVKQVGAREMAVAARESSRRLQALQSQDRRKILLDVADALEANESLIKVENEADVAAAQEA 349 (717)
Q Consensus 270 ~~~~tg~~iGT~i~a~~~~~~~~~~v~~av~~A~~A~~~w~~~~~~~R~~~L~~~a~~l~~~~~el~~~~~~d~~~~~~~ 349 (717)
.+|.+|+.++++..++ .+|+++++++|++||+.|+++|.++|.++|++++++|++|+++|++++++|++++.
T Consensus 31 ~~P~tg~~~~~~~~~~------~~~v~~av~~A~~A~~~w~~~~~~~R~~~L~~~a~~l~~~~~ela~~~~~e~Gk~~-- 102 (487)
T 2w8n_A 31 QDPASGAALGMVADCG------VREARAAVRAAYEAFCRWREVSAKERSSLLRKWYNLMIQNKDDLARIITAESGKPL-- 102 (487)
T ss_dssp ECTTTCCEEEEEECCC------HHHHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHCCCH--
T ss_pred ECCCCCCEEEEEeCCC------HHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCH--
Confidence 4678999999998888 88999999999999999999999999999999999999999999999988876543
Q ss_pred chhHHHHHHhhcChhHHHHHHHHHHHHhccccc-ccccccccccCCCceEEEeecceeEEEEEcCC-Cch-hHHHHHHHH
Q 005041 350 GYAKSLVSRLALKPGKISSLAKSIRILADMEEP-IGQILKRTELADGLILEKTSCPLGVLLIVFES-RPD-ALVQIASLA 426 (717)
Q Consensus 350 g~~~a~~~~~~~~~~~i~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~PlGVV~~I~p~-~P~-~~~~~~~~A 426 (717)
.++ ..|+..+++.++++++..+. .++..+.. ..+...+++|+|+|||++|+|| ||. +.+++++||
T Consensus 103 --~ea--------~~ev~~~~~~~~~~a~~~~~~~g~~~~~~--~~~~~~~~~~~P~GVv~~I~PwN~P~~~~~~~~~~A 170 (487)
T 2w8n_A 103 --KEA--------HGEILYSAFFLEWFSEEARRVYGDIIHTP--AKDRRALVLKQPIGVAAVITPWNFPSAMITRKVGAA 170 (487)
T ss_dssp --HHH--------HHHHHHHHHHHHHHHHHGGGCCCEEECCS--CTTCEEEEEEEECCEEEEECCSSSTTHHHHHHHHHH
T ss_pred --HHH--------HHHHHHHHHHHHHHHHHHHHhcCcccccC--CCCceeEEEEecceEEEEECCCcchHHHHHHHHHHH
Confidence 122 13577788888888765433 34332211 1345678899999999999998 685 677999999
Q ss_pred HHhCCEEEEeCCcchHHHHHHHHHHHHHhcccc-cCcCceEEec---C-CChhhhhhcCCCCccEEEeecCHHHHHHHHh
Q 005041 427 IRSGNGLLLKGGKEAMRSNAILHKVITSAIPDT-VGEKLIGLVT---S-REEIPDLLKLDDVIDLVIPRGSNKLVSQIKE 501 (717)
Q Consensus 427 LaaGN~vVlKps~~tp~t~~~l~~~~~~al~~a-lP~gvv~vv~---~-~~~~~~~l~~~~~v~~v~fTGs~~~g~~i~~ 501 (717)
|++||+||+||||.||+|+.+|++++.+ + ||+|++|+|+ | +.++++.|..||+||+|+||||+++|+.|++
T Consensus 171 LaaGN~VVlKps~~tp~t~~~l~~l~~~----aGlP~gvv~vv~~~~g~~~~~~~~L~~~~~v~~V~fTGS~~~g~~i~~ 246 (487)
T 2w8n_A 171 LAAGCTVVVKPAEDTPFSALALAELASQ----AGIPSGVYNVIPCSRKNAKEVGEAICTDPLVSKISFTGSTTTGKILLH 246 (487)
T ss_dssp HHHTCEEEEECCTTCCHHHHHHHHHHHH----HTCCTTSEEECCCCHHHHHHHHHHHTTCTTEEEEEEEECHHHHHHHHH
T ss_pred HHcCCEEEEECCCcchHHHHHHHHHHHH----hCCCCCeEEEEecCCCCcHHHHHHHHhCCCcCEEEEeCCHHHHHHHHH
Confidence 9999999999999999999999999987 7 9999999999 7 5567888889999999999999999999998
Q ss_pred hc---CCCEEEecCCcceEEEcCCCCHHHHHHHHHhhccCCCc-cccccceEEEcCcccChhhHHHHHHHHHH-cC----
Q 005041 502 ST---KIPVLGHADGICHVYVDKSANLDVAKNIVIDAKIDYPA-ACNAMETLLVHKDLACNGALNELVVELQH-EG---- 572 (717)
Q Consensus 502 ~a---~~p~~lElGGk~p~iV~~dADl~~A~~~i~~~~~~n~g-~C~a~~rv~V~~~i~d~~f~~~l~~~~~~-~~---- 572 (717)
.+ .||+++|||||||+||++|||+|.|++.+++++|.|+| +|+|++|+|||+++| |+|+++|++++++ +.
T Consensus 247 ~aa~~~~pv~lElGGk~p~iV~~dADl~~Aa~~i~~~~~~n~GQ~C~a~~rvlV~~~i~-d~f~~~l~~~~~~~~~~G~p 325 (487)
T 2w8n_A 247 HAANSVKRVSMELGGLAPFIVFDSANVDQAVAGAMASKFRNTGQTCVCSNQFLVQRGIH-DAFVKAFAEAMKKNLRVGNG 325 (487)
T ss_dssp HHHTTTCEEEEEECEEEEEEECTTSCHHHHHHHHHHHHTCCCSCCCSEEEEEEEEHHHH-HHHHHHHHHHHHHHCCBSCT
T ss_pred HHhccCCcEEEecCCCCeEEECCCCCHHHHHHHHHHHHHhCCCCccccCCEEEEcccHH-HHHHHHHHHHHHhhcccCCc
Confidence 87 59999999999999999999999999999999999987 999999999999999 8999999999888 52
Q ss_pred ------------------------------ceE-ecCccc-cc--cc-c-C-----CCCccccccccCceEEEEEeCCHH
Q 005041 573 ------------------------------VGL-FGGPRA-SK--LL-Q-I-----PETRLFHHEYNSMVCTVEIVDDVR 611 (717)
Q Consensus 573 ------------------------------~~~-~g~~~~-~~--~~-p-i-----~~~~~~~eE~FGPVl~v~~~~~~d 611 (717)
+++ .|+... .+ |+ | | ++|++++||+||||++|++|+|+|
T Consensus 326 ~~~~~~~gpli~~~~~~rv~~~i~~a~~~Ga~~~~gg~~~~~g~~~~~Ptvl~~v~~~~~i~~eEiFGPVl~v~~~~~~~ 405 (487)
T 2w8n_A 326 FEEGTTQGPLINEKAVEKVEKQVNDAVSKGATVVTGGKRHQLGKNFFEPTLLCNVTQDMLCTHEETFGPLAPVIKFDTEE 405 (487)
T ss_dssp TSTTCCBCCCSSHHHHHHHHHHHHHHHTTTCEEEECCSBCTTCTTCBCCEEEEEECGGGGTTCTTCCSSEEEEEEESCHH
T ss_pred ccccCcccCCCCHHHHHHHHHHHHHHHHCCCEEEeCCccCCCCCceECCEEEecCCCcchhhhcccccceEEEEEeCCHH
Confidence 122 244322 23 44 5 3 358999999999999999999999
Q ss_pred HHHHHHHhcCCCceeEEEecCHHHHHHHHhcCCeeeEEEcCCCCCCCCCccCCccccccccCcccccccchhhcccEEEE
Q 005041 612 AAIDHIHQHGSAHTDCIVAEDQKVAETFLCQVDSAAVFHNASTRFCDGARFGLGAEVGISTSRIHARGPVGVEGLLTTRW 691 (717)
Q Consensus 612 eAi~~aN~~~~GL~a~I~t~d~~~a~~~~~~l~~G~v~iN~~~~~~~~~pfG~g~~~G~~~~~~~~~g~~g~~~ft~~k~ 691 (717)
|||+++|+++|||++||||+|.++++++++++++|+|+||++....+.+||||.+.||+| +++|++|+++||+.|+
T Consensus 406 eAi~~aN~~~~gL~a~v~t~d~~~a~~~~~~l~aG~v~vN~~~~~~~~~PfGG~~~SG~G----~~~G~~~l~~f~~~k~ 481 (487)
T 2w8n_A 406 EAIAIANAADVGLAGYFYSQDPAQIWRVAEQLEVGMVGVNEGLISSVECPFGGVKQSGLG----REGSKYGIDEYLELKY 481 (487)
T ss_dssp HHHHHHTCTTCCSEEEEECCCHHHHHHHHHHSCSSEEEESCSCCCCTTSCBCCSGGGEES----CBSTTTGGGGGEEEEE
T ss_pred HHHHHHhCCCCCceEEEeCCCHHHHHHHHHhCCeeeEEEcCCCCCCCCCCCCCCCCCCcC----CCchHHHHHHhcCccE
Confidence 999999999999999999999999999999999999999998777778999999999886 4579999999999999
Q ss_pred EEec
Q 005041 692 ILRG 695 (717)
Q Consensus 692 v~~~ 695 (717)
|.++
T Consensus 482 v~~~ 485 (487)
T 2w8n_A 482 VCYG 485 (487)
T ss_dssp EEEC
T ss_pred EEEe
Confidence 9874
No 30
>2j6l_A Aldehyde dehydrogenase family 7 member A1; NAD, reductase, oxidoreductase, lysine catabolism; HET: NAI; 1.3A {Homo sapiens} PDB: 2jg7_A*
Probab=100.00 E-value=1.4e-77 Score=677.19 Aligned_cols=401 Identities=16% Similarity=0.158 Sum_probs=345.9
Q ss_pred HHHhcCCcceEEEecCCcccccHhhHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHhh
Q 005041 270 IKVLEGKRVGTLFHRDAHLWVKQVGAREMAVAARESSRRLQALQSQDRRKILLDVADALEANESLIKVENEADVAAAQEA 349 (717)
Q Consensus 270 ~~~~tg~~iGT~i~a~~~~~~~~~~v~~av~~A~~A~~~w~~~~~~~R~~~L~~~a~~l~~~~~el~~~~~~d~~~~~~~ 349 (717)
.+|.+|+.++++..++ .+|+++++++|++||+.|++++.++|.++|++++++|++|+++|++++++|++++..
T Consensus 42 ~nP~tg~~i~~~~~~~------~~~v~~av~~A~~A~~~w~~~~~~~R~~~L~~~a~~l~~~~~ela~~~~~e~Gk~~~- 114 (500)
T 2j6l_A 42 YCPANNEPIARVRQAS------VADYEETVKKAREAWKIWADIPAPKRGEIVRQIGDALREKIQVLGSLVSLEMGKILV- 114 (500)
T ss_dssp EETTTTEEEEEEECCC------HHHHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHTCCCHH-
T ss_pred ECCCCCCEEEEEeCCC------HHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHH-
Confidence 5688999999998888 889999999999999999999999999999999999999999999988877654321
Q ss_pred chhHHHHHHhhcChhHHHHHHHHHHHHhccccc-ccccccccccCCCceEEEeecceeEEEEEcCC-Cch-hHHHHHHHH
Q 005041 350 GYAKSLVSRLALKPGKISSLAKSIRILADMEEP-IGQILKRTELADGLILEKTSCPLGVLLIVFES-RPD-ALVQIASLA 426 (717)
Q Consensus 350 g~~~a~~~~~~~~~~~i~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~PlGVV~~I~p~-~P~-~~~~~~~~A 426 (717)
++ ..|+..+++.++++++..+. .+...+. ...+...+++|+|+|||++|+|| ||. +.+++++||
T Consensus 115 ---ea--------~~ev~~~~~~~~~~a~~~~~~~g~~~~~--~~~~~~~~~~~~P~GVv~~I~PwN~P~~~~~~~~~~A 181 (500)
T 2j6l_A 115 ---EG--------VGEVQEYVDICDYAVGLSRMIGGPILPS--ERSGHALIEQWNPVGLVGIITAFNFPVAVYGWNNAIA 181 (500)
T ss_dssp ---HH--------HHHHHHHHHHHHHHHHHTTTCCCBEECC--SSTTEEEEEEEEECSEEEEECCSSSTTHHHHHHHHHH
T ss_pred ---HH--------HHHHHHHHHHHHHHHHHHHHhcCccccc--cCCCceeEEEEecccEEEEECCCcchhhHHHHHHHHH
Confidence 21 23667777778877755432 2332221 11234457789999999999998 685 678999999
Q ss_pred HHhCCEEEEeCCcchHHHHHHHHHHHHHhcccc-cCcCceEEecCCChhhhhhcCCCCccEEEeecCHHHHHHHHhhc--
Q 005041 427 IRSGNGLLLKGGKEAMRSNAILHKVITSAIPDT-VGEKLIGLVTSREEIPDLLKLDDVIDLVIPRGSNKLVSQIKEST-- 503 (717)
Q Consensus 427 LaaGN~vVlKps~~tp~t~~~l~~~~~~al~~a-lP~gvv~vv~~~~~~~~~l~~~~~v~~v~fTGs~~~g~~i~~~a-- 503 (717)
|++||+||+|||+.||+|+.++++++.+++.++ +|+|++|+|+|+.++++.|..||+||+|+||||+++||.|++.+
T Consensus 182 LaaGN~VVlKps~~tp~t~~~l~~l~~~al~~aGlP~gvv~vv~g~~~~g~~L~~~~~vd~I~FTGS~~~g~~i~~~aa~ 261 (500)
T 2j6l_A 182 MICGNVCLWKGAPTTSLISVAVTKIIAKVLEDNKLPGAICSLTCGGADIGTAMAKDERVNLLSFTGSTQVGKQVGLMVQE 261 (500)
T ss_dssp HHTTCEEEEECCGGGHHHHHHHHHHHHHHHHHTTCCGGGEEEECCSHHHHHHHHHCTTCSEEEEESCHHHHHHHHHHHHH
T ss_pred HHhCCEEEEECCCccHHHHHHHHHHHHHHHHhhcCCcCeEEEEeCCHHHHHHHhcCCCcCEEEEECCHHHHHHHHHHhcc
Confidence 999999999999999999999999999988889 99999999998666888888899999999999999999999876
Q ss_pred -CCCEEEecCCcceEEEcCCCCHHHHHHHHHhhccCCCc-cccccceEEEcCcccChhhHHHHHHHHHHcC---------
Q 005041 504 -KIPVLGHADGICHVYVDKSANLDVAKNIVIDAKIDYPA-ACNAMETLLVHKDLACNGALNELVVELQHEG--------- 572 (717)
Q Consensus 504 -~~p~~lElGGk~p~iV~~dADl~~A~~~i~~~~~~n~g-~C~a~~rv~V~~~i~d~~f~~~l~~~~~~~~--------- 572 (717)
.||++||||||||+||++|||+|.|++.+++++|.|+| +|+|++|+|||+++| |+|+++|+++++++.
T Consensus 262 ~l~~v~lELGGk~p~iV~~dADl~~Aa~~i~~~~~~n~GQ~C~a~~rvlV~~~i~-d~f~~~l~~~~~~~~~G~p~~~~~ 340 (500)
T 2j6l_A 262 RFGRSLLELGGNNAIIAFEDADLSLVVPSALFAAVGTAGQRCTTARRLFIHESIH-DEVVNRLKKAYAQIRVGNPWDPNV 340 (500)
T ss_dssp TTCEEEEECCCCEEEEECTTCCHHHHHHHHHHHHHGGGGCSTTCEEEEEEETTTH-HHHHHHHHHHHHTCCBSCTTSTTC
T ss_pred CCCceEEEcCCCCceEECCCCCHHHHHHHHHHHHHhcCCCCcCCCcEEEEcHHHH-HHHHHHHHHHhhhcccCCcccCCC
Confidence 49999999999999999999999999999999999987 999999999999999 899999999988752
Q ss_pred -------------------------ceE-ecCccc--ccc-c-c-C-----CCCccccccccCceEEEEEeCCHHHHHHH
Q 005041 573 -------------------------VGL-FGGPRA--SKL-L-Q-I-----PETRLFHHEYNSMVCTVEIVDDVRAAIDH 616 (717)
Q Consensus 573 -------------------------~~~-~g~~~~--~~~-~-p-i-----~~~~~~~eE~FGPVl~v~~~~~~deAi~~ 616 (717)
.++ .|+... .++ + | | ++|++++||+||||++|++|+|+||||++
T Consensus 341 ~~gpli~~~~~~rv~~~i~~a~~~Ga~v~~gg~~~~~~g~~~~PTvl~~v~~~~~i~~eEiFGPVl~v~~~~~~deAi~~ 420 (500)
T 2j6l_A 341 LYGPLHTKQAVSMFLGAVEEAKKEGGTVVYGGKVMDRPGNYVEPTIVTGLGHDASIAHTETFAPILYVFKFQNEEEVFAW 420 (500)
T ss_dssp CBCCCSCHHHHHHHHHHHHHHHHTTCEEEECCSBCSSSSSCBCCEEEESCCTTCHHHHSCCSSSEEEEEEECCHHHHHHH
T ss_pred ccccCCCHHHHHHHHHHHHHHHHCCCEEEECCcccCCCCCEEcCEEEECCCCcChhhcCcccCceEEEEeeCCHHHHHHH
Confidence 122 244321 233 3 5 3 36899999999999999999999999999
Q ss_pred HHhcCCCceeEEEecCHHHHHHHH--hcCCeeeEEEcCCCCC-CCCCccCCccccccccCcccccccchhhcccEEEEEE
Q 005041 617 IHQHGSAHTDCIVAEDQKVAETFL--CQVDSAAVFHNASTRF-CDGARFGLGAEVGISTSRIHARGPVGVEGLLTTRWIL 693 (717)
Q Consensus 617 aN~~~~GL~a~I~t~d~~~a~~~~--~~l~~G~v~iN~~~~~-~~~~pfG~g~~~G~~~~~~~~~g~~g~~~ft~~k~v~ 693 (717)
+|+++|||++||||+|.+++++++ +++++|+|+||++... ....||||.+.||+| +++|.+|+++|++.|+|.
T Consensus 421 aN~~~~gL~a~v~t~d~~~a~~~~~~~~~~~G~V~vN~~~~~~~~~~PfGG~k~SG~G----~~~g~~~~~~f~~~k~v~ 496 (500)
T 2j6l_A 421 NNEVKQGLSSSIFTKDLGRIFRWLGPKGSDCGIVNVNIPTSGAEIGGAFGGEKHTGGG----RESGSDAWKQYMRRSTCT 496 (500)
T ss_dssp HHTSSCCSEEEEECCCHHHHHHHHSTTSCCSSEEEESSCTTCCCTTSEECCSGGGCSC----CEESTTGGGGGEEEEEEE
T ss_pred HhCCCCCcEEEEECCCHHHHHHHHhhccCCeeEEEECCCCccCCCCCCcCCcCCCCCC----CcchHHHHHHhhceEEEE
Confidence 999999999999999999999999 7799999999986543 457899999999886 356999999999999998
Q ss_pred ec
Q 005041 694 RG 695 (717)
Q Consensus 694 ~~ 695 (717)
++
T Consensus 497 ~~ 498 (500)
T 2j6l_A 497 IN 498 (500)
T ss_dssp EE
T ss_pred Ee
Confidence 74
No 31
>2imp_A Lactaldehyde dehydrogenase; protein-lactate-NADH ternary complex, oxidoreductase; HET: NAI; 2.10A {Escherichia coli} PDB: 2ilu_A* 2hg2_A* 2opx_A*
Probab=100.00 E-value=2.5e-77 Score=672.91 Aligned_cols=397 Identities=18% Similarity=0.196 Sum_probs=347.4
Q ss_pred HHHhcCCcceEEEecCCcccccHhhHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHhh
Q 005041 270 IKVLEGKRVGTLFHRDAHLWVKQVGAREMAVAARESSRRLQALQSQDRRKILLDVADALEANESLIKVENEADVAAAQEA 349 (717)
Q Consensus 270 ~~~~tg~~iGT~i~a~~~~~~~~~~v~~av~~A~~A~~~w~~~~~~~R~~~L~~~a~~l~~~~~el~~~~~~d~~~~~~~ 349 (717)
.+|.+|+.++++..++ .+|+++++++|++||+.|+++|.++|.++|++++++|++|+++|++++++|++++..
T Consensus 27 ~~P~tg~~~~~~~~~~------~~~v~~av~~A~~A~~~w~~~~~~~R~~~L~~~a~~l~~~~~ela~~~~~e~Gk~~~- 99 (479)
T 2imp_A 27 VNPATEAVISRIPDGQ------AEDARKAIDAAERAQPEWEALPAIERASWLRKISAGIRERASEISALIVEEGGKIQQ- 99 (479)
T ss_dssp ECTTTCCEEEEEECCC------HHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHCCCHH-
T ss_pred ECCCCCCEEEEEeCCC------HHHHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHH-
Confidence 5688999999998888 899999999999999999999999999999999999999999999999888765421
Q ss_pred chhHHHHHHhhcChhHHHHHHHHHHHHhccccc-ccccccccccCCCceEEEeecceeEEEEEcCC-Cch-hHHHHHHHH
Q 005041 350 GYAKSLVSRLALKPGKISSLAKSIRILADMEEP-IGQILKRTELADGLILEKTSCPLGVLLIVFES-RPD-ALVQIASLA 426 (717)
Q Consensus 350 g~~~a~~~~~~~~~~~i~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~PlGVV~~I~p~-~P~-~~~~~~~~A 426 (717)
++ ..|+..+++.++++++..+. .+...+.. ..+...+++++|+|||++|+|| ||. +.+++++||
T Consensus 100 ---ea--------~~ev~~~~~~l~~~a~~~~~~~~~~~~~~--~~~~~~~~~~~P~GVv~~I~PwN~P~~~~~~~~~~A 166 (479)
T 2imp_A 100 ---LA--------EVEVAFTADYIDYMAEWARRYEGEIIQSD--RPGENILLFKRALGVTTGILPWNFPFFLIARKMAPA 166 (479)
T ss_dssp ---HH--------HHHHHHHHHHHHHHHTTTTTCCCEEECCS--STTEEEEEEEEECSEEEEECCSSSHHHHHHHHHHHH
T ss_pred ---HH--------HHHHHHHHHHHHHHHHHHHHhhCCccccC--CCCceeEEEEeccceEEEECCCchHHHHHHHHHHHH
Confidence 22 24788889999998876543 34332211 1244678899999999999998 685 667999999
Q ss_pred HHhCCEEEEeCCcchHHHHHHHHHHHHHhcccc-cCcCceEEecC-CChhhhhhcCCCCccEEEeecCHHHHHHHHhhc-
Q 005041 427 IRSGNGLLLKGGKEAMRSNAILHKVITSAIPDT-VGEKLIGLVTS-REEIPDLLKLDDVIDLVIPRGSNKLVSQIKEST- 503 (717)
Q Consensus 427 LaaGN~vVlKps~~tp~t~~~l~~~~~~al~~a-lP~gvv~vv~~-~~~~~~~l~~~~~v~~v~fTGs~~~g~~i~~~a- 503 (717)
|++||+||+|||+.||+|+.++++++++ + ||+|++|+|+| ++++++.|..||+||+|+||||+++|+.|++.+
T Consensus 167 LaaGN~VVlKps~~tp~t~~~l~~l~~~----aGlP~gvv~vv~g~~~~~~~~L~~~~~v~~V~fTGS~~~g~~i~~~aa 242 (479)
T 2imp_A 167 LLTGNTIVIKPSEFTPNNAIAFAKIVDE----IGLPRGVFNLVLGRGETVGQELAGNPKVAMVSMTGSVSAGEKIMATAA 242 (479)
T ss_dssp HHTTCEEEEECCTTSCHHHHHHHHHHHH----HTCCTTSEEECCSCTTTHHHHHHHCTTEEEEEEESCHHHHHHHHHHHH
T ss_pred HHcCCEEEEECCccchHHHHHHHHHHHH----hCCCcCeEEEEECCcHHHHHHHHhCCCcCEEEEeCCHHHHHHHHHHHh
Confidence 9999999999999999999999999997 7 99999999996 566788888899999999999999999999877
Q ss_pred --CCCEEEecCCcceEEEcCCCCHHHHHHHHHhhccCCCc-cccccceEEEcCcccChhhHHHHHHHHHHcC--------
Q 005041 504 --KIPVLGHADGICHVYVDKSANLDVAKNIVIDAKIDYPA-ACNAMETLLVHKDLACNGALNELVVELQHEG-------- 572 (717)
Q Consensus 504 --~~p~~lElGGk~p~iV~~dADl~~A~~~i~~~~~~n~g-~C~a~~rv~V~~~i~d~~f~~~l~~~~~~~~-------- 572 (717)
.||+++|||||||+||++|||+|.|++.+++++|.|+| +|+|++|+|||+++| |+|+++|+++++++.
T Consensus 243 ~~~~~v~lElGGk~p~iV~~dADl~~aa~~i~~~~~~n~GQ~C~a~~rv~V~~~i~-d~f~~~l~~~~~~~~~g~p~~~~ 321 (479)
T 2imp_A 243 KNITKVCLELGGKAPAIVMDDADLELAVKAIVDSRVINSGQVCNCAERVYVQKGIY-DQFVNRLGEAMQAVQFGNPAERN 321 (479)
T ss_dssp TTTCEEEEECCCCCEEEECTTSCHHHHHHHHHTTSSTTTTCCSSSCSEEEEEGGGH-HHHHHHHHHHHHTCCBSCTTTCS
T ss_pred ccCCcEEEEcCCcCeEEECCCCCHHHHHHHHHHHHhhcCCCcCcCCcEEEEehhhH-HHHHHHHHHHHHhcccCCccccC
Confidence 39999999999999999999999999999999999987 999999999999999 899999999987642
Q ss_pred ---------------------------ceE-ecCccc--ccc-c-c-C-----CCCccccccccCceEEEEEeCCHHHHH
Q 005041 573 ---------------------------VGL-FGGPRA--SKL-L-Q-I-----PETRLFHHEYNSMVCTVEIVDDVRAAI 614 (717)
Q Consensus 573 ---------------------------~~~-~g~~~~--~~~-~-p-i-----~~~~~~~eE~FGPVl~v~~~~~~deAi 614 (717)
+++ .|+... .++ + | | ++|++++||+||||++|++|+|+||||
T Consensus 322 ~~~~gpli~~~~~~rv~~~i~~a~~~Ga~~~~gG~~~~~~g~~~~Ptvl~~v~~~~~~~~eEiFGPVl~v~~~~~~~eAi 401 (479)
T 2imp_A 322 DIAMGPLINAAALERVEQKVARAVEEGARVAFGGKAVEGKGYYYPPTLLLDVRQEMSIMHEETFGPVLPVVAFDTLEDAI 401 (479)
T ss_dssp SCSBCCCSSHHHHHHHHHHHHHHHHTTCEEEECCCCCCSSSCCCCCEEEESCCTTSGGGGSCCCSSEEEEEEESSHHHHH
T ss_pred CCccCCCcCHHHHHHHHHHHHHHHHCCCEEEECCcccCCCCceECCEEEeCCCCCCHHHhCccCCceEEEEeeCCHHHHH
Confidence 223 244331 233 3 5 2 358899999999999999999999999
Q ss_pred HHHHhcCCCceeEEEecCHHHHHHHHhcCCeeeEEEcCCCCCCCCCccCCccccccccCcccccccchhhcccEEEEEEe
Q 005041 615 DHIHQHGSAHTDCIVAEDQKVAETFLCQVDSAAVFHNASTRFCDGARFGLGAEVGISTSRIHARGPVGVEGLLTTRWILR 694 (717)
Q Consensus 615 ~~aN~~~~GL~a~I~t~d~~~a~~~~~~l~~G~v~iN~~~~~~~~~pfG~g~~~G~~~~~~~~~g~~g~~~ft~~k~v~~ 694 (717)
+++|+++|||++||||+|.++++++++++++|+|+||++....+.+||||.++||+| +++|++|+++||+.|+|++
T Consensus 402 ~~aN~~~~gL~a~v~t~d~~~~~~~~~~l~~G~v~iN~~~~~~~~~PfGG~k~SG~G----~~~g~~~l~~~~~~k~v~~ 477 (479)
T 2imp_A 402 SMANDSDYGLTSSIYTQNLNVAMKAIKGLKFGETYINRENFEAMQGFHAGWRKSGIG----GADGKHGLHEYLQTQVVYL 477 (479)
T ss_dssp HHHHCSSEESEEEEECCCHHHHHHHHHHCCSSEEEESSCCCCCTTSCBCCEETTEES----CBSHHHHHHTTEEEEEEEE
T ss_pred HHHhcCCCCeeEEEECCCHHHHHHHHHhCCEeEEEECCCCCCCCCCCCCCCCCCCCC----CCchHHHHHHhcCeeEEEe
Confidence 999999999999999999999999999999999999997766778999999999986 4579999999999999986
Q ss_pred c
Q 005041 695 G 695 (717)
Q Consensus 695 ~ 695 (717)
+
T Consensus 478 ~ 478 (479)
T 2imp_A 478 Q 478 (479)
T ss_dssp E
T ss_pred c
Confidence 3
No 32
>1uxt_A Glyceraldehyde-3-phosphate dehydrogenase (NADP+); GAPN, ALDH, glucose 1-phosphate, glycolysis, regulation, catatysis, oxidoreductase; HET: G1P NAD; 2.2A {Thermoproteus tenax} SCOP: c.82.1.1 PDB: 1uxp_A* 1uxq_A* 1uxr_A* 1uxn_A* 1uxu_A* 1uxv_A* 1ky8_A*
Probab=100.00 E-value=1.5e-77 Score=676.55 Aligned_cols=399 Identities=16% Similarity=0.158 Sum_probs=347.3
Q ss_pred HHHhcCCcceEEEecCCcccccHhhHHHHHHHHHHHHH-HHhcCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHh
Q 005041 270 IKVLEGKRVGTLFHRDAHLWVKQVGAREMAVAARESSR-RLQALQSQDRRKILLDVADALEANESLIKVENEADVAAAQE 348 (717)
Q Consensus 270 ~~~~tg~~iGT~i~a~~~~~~~~~~v~~av~~A~~A~~-~w~~~~~~~R~~~L~~~a~~l~~~~~el~~~~~~d~~~~~~ 348 (717)
.+|.+++.++++..++ .+|+++++++|++||+ .|+++|.++|.++|++++++|++|+++|++++++|++++.
T Consensus 37 ~nP~tg~~i~~~~~~~------~~~v~~av~~A~~A~~~~w~~~~~~~R~~~L~~~a~~l~~~~~ela~~~~~e~Gk~~- 109 (501)
T 1uxt_A 37 KSPIDLATIAKVISPS------REEVERTLDVLFKRGRWSARDMPGTERLAVLRKAADIIERNLDVFAEVLVMNAGKPK- 109 (501)
T ss_dssp ECTTTCCEEEEEECCC------HHHHHHHHHHHHHTHHHHHHTSCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHCCCH-
T ss_pred ECCCCCCEEEEEeCCC------HHHHHHHHHHHHHHhhhhhccCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhCCCH-
Confidence 4578999999998888 8999999999999999 9999999999999999999999999999999988876542
Q ss_pred hchhHHHHHHhhcChhHHHHHHHHHHHHhcccccc-cccccccccCC--CceEEEeecceeEEEEEcCC-Cch-hHHHHH
Q 005041 349 AGYAKSLVSRLALKPGKISSLAKSIRILADMEEPI-GQILKRTELAD--GLILEKTSCPLGVLLIVFES-RPD-ALVQIA 423 (717)
Q Consensus 349 ~g~~~a~~~~~~~~~~~i~~~~~~~~~~~~~~~~~-~~~~~~~~~~~--~~~~~~~~~PlGVV~~I~p~-~P~-~~~~~~ 423 (717)
.++ ..|+..+++.++++++..+.. ++..+....+. +...+++|+|+|||++|+|| ||. +.++++
T Consensus 110 ---~ea--------~~Ev~~~~~~l~~~a~~~~~~~g~~~~~~~~~~~~~~~~~~~~~P~GVv~~I~PwN~P~~~~~~~~ 178 (501)
T 1uxt_A 110 ---SAA--------VGEVKAAVDRLRLAELDLKKIGGDYIPGDWTYDTLETEGLVRREPLGVVAAITPFNYPLFDAVNKI 178 (501)
T ss_dssp ---HHH--------HHHHHHHHHHHHTGGGGGGGTCCEEEESTTSSTTTTEEEEEEEEECSEEEEECCTTSTTHHHHHHH
T ss_pred ---HHH--------HHHHHHHHHHHHHHHHHHHHhcCccccccccCCCcCceEEEEEeeccEEEEECCCccHHHHHHHHH
Confidence 122 236788889999988765543 43322110022 33678899999999999998 684 677999
Q ss_pred HHHHHhCCEEEEeCCcchHHHHHHHHHHHHHhcccc-cCcCceEEecCCChhhhhhcCCCCccEEEeecCHHHHHHHHhh
Q 005041 424 SLAIRSGNGLLLKGGKEAMRSNAILHKVITSAIPDT-VGEKLIGLVTSREEIPDLLKLDDVIDLVIPRGSNKLVSQIKES 502 (717)
Q Consensus 424 ~~ALaaGN~vVlKps~~tp~t~~~l~~~~~~al~~a-lP~gvv~vv~~~~~~~~~l~~~~~v~~v~fTGs~~~g~~i~~~ 502 (717)
+|||++||+||+||||.||+|+.++++++++ + ||+|++|+|+|..++++.|..||+||+|+||||+++||.|++.
T Consensus 179 ~~ALaaGN~VVlKps~~tp~t~~~l~~l~~e----aGlP~gvv~vv~g~~~~g~~L~~~~~vd~I~FTGS~~~G~~i~~~ 254 (501)
T 1uxt_A 179 TYSFIYGNAVVVKPSISDPLPAAMAVKALLD----AGFPPDAIALLNLPGKEAEKIVADDRVAAVSFTGSTEVGERVVKV 254 (501)
T ss_dssp HHHHHTTCEEEEECCTTSCHHHHHHHHHHHH----TTCCTTSEEECCCCHHHHHHHHTCTTCCEEEEESCHHHHHHHHHH
T ss_pred HHHHHcCCEEEEeCCCCchHHHHHHHHHHHH----hCCCcCeEEEEeCCcHHHHHHHhCCCcCEEEEeCcHHHHHHHHHh
Confidence 9999999999999999999999999999987 7 9999999999633788888899999999999999999999988
Q ss_pred cC-CCEEEecCCcceEEEcCCCCHHHHHHHHHhhccCCCc-cccccceEEEcCcccChhhHHHHHHHHHHcCc-------
Q 005041 503 TK-IPVLGHADGICHVYVDKSANLDVAKNIVIDAKIDYPA-ACNAMETLLVHKDLACNGALNELVVELQHEGV------- 573 (717)
Q Consensus 503 a~-~p~~lElGGk~p~iV~~dADl~~A~~~i~~~~~~n~g-~C~a~~rv~V~~~i~d~~f~~~l~~~~~~~~~------- 573 (717)
+. ||+++|||||||+||++|||+|.|++.+++++|.|+| +|+|++|+|||+++| |+|+++|+++++++.+
T Consensus 255 aal~~v~lELGGk~p~iV~~dADl~~Aa~~i~~~~~~n~GQ~C~a~~rvlV~~~i~-d~f~~~l~~~~~~~~~g~p~~~~ 333 (501)
T 1uxt_A 255 GGVKQYVMELGGGDPAIVLEDADLDLAADKIARGIYSYAGQRCDAIKLVLAERPVY-GKLVEEVAKRLSSLRVGDPRDPT 333 (501)
T ss_dssp HCSSEEEEECCCCEEEEECTTSCHHHHHHHHHHHHHGGGGCSTTCEEEEEEEHHHH-HHHHHHHHHHHHTCCBSCTTSTT
T ss_pred cCCCeEEEEcCCcCeEEECCCCCHHHHHHHHHHHHhcCCCCCCcCCcEEEeccchH-HHHHHHHHHHHHhccCCCccccC
Confidence 85 9999999999999999999999999999999999987 999999999999999 8999999999886531
Q ss_pred ---------------------------eE-ecCccccc-c-c-c-C----C----CCccccccccCceEEEEEeCCHHHH
Q 005041 574 ---------------------------GL-FGGPRASK-L-L-Q-I----P----ETRLFHHEYNSMVCTVEIVDDVRAA 613 (717)
Q Consensus 574 ---------------------------~~-~g~~~~~~-~-~-p-i----~----~~~~~~eE~FGPVl~v~~~~~~deA 613 (717)
++ .|+.. .+ + + | | + +|++++||+||||++|++|+|+|||
T Consensus 334 ~~~Gpli~~~~~~rv~~~i~~a~~~Ga~~~~gG~~-~g~~~~~Ptvl~~v~~~~~~~~i~~eEiFGPVl~v~~~~~~deA 412 (501)
T 1uxt_A 334 VDVGPLISPSAVDEMMAAIEDAVEKGGRVLAGGRR-LGPTYVQPTFVEAPADRVKDMVLYKREVFAPVALAVEVKDLDQA 412 (501)
T ss_dssp CSBCCCSCHHHHHHHHHHHHHHHHTTCEEEECCCB-CSSSCBCCEEEECCHHHHTTSHHHHSCCCSSEEEEEEESSHHHH
T ss_pred CcccCCCCHHHHHHHHHHHHHHHHCCCEEEeCCcc-CCCceECCEEEeCCCCCCCcCHHHhCcccCceEEEEeeCCHHHH
Confidence 22 24433 34 3 3 5 2 2 3689999999999999999999999
Q ss_pred HHHHHhcCCCceeEEEecCHHHHHHHHhcCCeeeEEEcCC-CCCCCCCccCCccccccccCcccccccchhhcccEEEEE
Q 005041 614 IDHIHQHGSAHTDCIVAEDQKVAETFLCQVDSAAVFHNAS-TRFCDGARFGLGAEVGISTSRIHARGPVGVEGLLTTRWI 692 (717)
Q Consensus 614 i~~aN~~~~GL~a~I~t~d~~~a~~~~~~l~~G~v~iN~~-~~~~~~~pfG~g~~~G~~~~~~~~~g~~g~~~ft~~k~v 692 (717)
|+++|+++|||++||||+|.++++++++++++|+|+||++ ....+.+||||.++||+| +++|++|+++||+.|+|
T Consensus 413 i~~aN~~~~gL~a~v~t~d~~~a~~~~~~l~~G~V~iN~~~~~~~~~~PfGG~k~SG~G----~~~G~~~l~~f~~~k~v 488 (501)
T 1uxt_A 413 IELANGRPYGLDAAVFGRDVVKIRRAVRLLEVGAIYINDMPRHGIGYYPFGGRKKSGVF----REGIGYAVEAVTAYKTI 488 (501)
T ss_dssp HHHHHTSSEESEEEEECCCHHHHHHHHHHCCSSEEEETSCCCCTTSSSCBCCEETTEES----CBSTTTTHHHHEEEEEE
T ss_pred HHHHhcCCCCcEEEEeCCCHHHHHHHHHhCCEeeEEEeCCCCCCCCCCCCCCcCCCCCC----ccChHHHHHHhCceeEE
Confidence 9999999999999999999999999999999999999997 556678999999999986 35799999999999999
Q ss_pred EecC
Q 005041 693 LRGN 696 (717)
Q Consensus 693 ~~~~ 696 (717)
.++.
T Consensus 489 ~~~~ 492 (501)
T 1uxt_A 489 VFNY 492 (501)
T ss_dssp EEEC
T ss_pred EEec
Confidence 8864
No 33
>3i44_A Aldehyde dehydrogenase; oxidoreductase, structural genomics, seattle structural genomics center for infectious disease, ssgcid; 2.00A {Bartonella henselae}
Probab=100.00 E-value=1.1e-77 Score=676.58 Aligned_cols=395 Identities=16% Similarity=0.172 Sum_probs=336.2
Q ss_pred HHHHhcCCcceEEEecCCcccccHhhHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHh
Q 005041 269 IIKVLEGKRVGTLFHRDAHLWVKQVGAREMAVAARESSRRLQALQSQDRRKILLDVADALEANESLIKVENEADVAAAQE 348 (717)
Q Consensus 269 l~~~~tg~~iGT~i~a~~~~~~~~~~v~~av~~A~~A~~~w~~~~~~~R~~~L~~~a~~l~~~~~el~~~~~~d~~~~~~ 348 (717)
+.+|.+++.++++..++ .+|+++|+++|++||+.|+++|.++|.++|++++++|++|.++|++++++|++++..
T Consensus 45 v~nP~tg~~i~~v~~~~------~~dv~~av~aA~~A~~~w~~~~~~~R~~~L~~~a~~l~~~~~ela~~~~~e~Gk~~~ 118 (497)
T 3i44_A 45 VIDPSTEEACAVISLGS------TRDADKAINAAKKAFQTWKTTSPHERLGFVEKILEIYEKRSSDMAKTISMEMGAPID 118 (497)
T ss_dssp EEETTTTEEEEEEECCC------HHHHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHCCCHH
T ss_pred eECCCCCCEEEEEcCCC------HHHHHHHHHHHHHHHHHHccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHH
Confidence 35688999999998888 899999999999999999999999999999999999999999999999888765432
Q ss_pred hchhHHHHHHhhcChhHHHHHHHHHHHHhcccccccccccccccCCCceEEEe-ecceeEEEEEcCC-Cch-hHHHHHHH
Q 005041 349 AGYAKSLVSRLALKPGKISSLAKSIRILADMEEPIGQILKRTELADGLILEKT-SCPLGVLLIVFES-RPD-ALVQIASL 425 (717)
Q Consensus 349 ~g~~~a~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~PlGVV~~I~p~-~P~-~~~~~~~~ 425 (717)
++.. .|+...++.+++++...+... .+. ....+...+++ |+|+|||++|+|| ||. +.+++++|
T Consensus 119 ----~a~~-------~ev~~~~~~~~~~a~~~~~~~--~~~-~~~~~~~~~~~~~~P~GVv~~I~PwN~P~~~~~~~~a~ 184 (497)
T 3i44_A 119 ----MALN-------AQTATGSSHIRNFIKAYKEFS--FQE-ALIEGNEQAILHYDAIGVVGLITPWNWPMNQVTLKVIP 184 (497)
T ss_dssp ----HHHH-------THHHHHHHHHHHHHHHHHHCC--SEE-ESSTTCSSCEEEEEECCEEEEECCSSSHHHHHHHHHHH
T ss_pred ----HHHH-------HHHHHHHHHHHHHHHHhhccc--ccc-cccCCceeEEEeecCceEEEEECCCcchHHHHHHHHHH
Confidence 2211 255566666666654322110 010 00112334567 9999999999998 685 67799999
Q ss_pred HHHhCCEEEEeCCcchHHHHHHHHHHHHHhcccc-cCcCceEEecC-CChhhhhhcCCCCccEEEeecCHHHHHHHHhhc
Q 005041 426 AIRSGNGLLLKGGKEAMRSNAILHKVITSAIPDT-VGEKLIGLVTS-REEIPDLLKLDDVIDLVIPRGSNKLVSQIKEST 503 (717)
Q Consensus 426 ALaaGN~vVlKps~~tp~t~~~l~~~~~~al~~a-lP~gvv~vv~~-~~~~~~~l~~~~~v~~v~fTGs~~~g~~i~~~a 503 (717)
||++||+||+|||+.||+|+.++++++.+ + ||+|+||+|+| +.++++.|..||+||+|+||||+++|+.|++.+
T Consensus 185 ALaaGN~VVlKps~~tp~t~~~l~~l~~e----aGlP~gvvnvv~g~~~~~g~~L~~hp~v~~I~FTGS~~~G~~i~~~a 260 (497)
T 3i44_A 185 ALLAGCTMVLKPSEIAPLSAMLFAEILDE----AALPSGVFNLINGDGANVGSYLSAHPDLEMISFTGSTRAGKDISKNA 260 (497)
T ss_dssp HHHHTCEEEEECCTTSCHHHHHHHHHHHH----TTCCTTSEEECCCCTTTHHHHHHHCTTCCEEEEESCHHHHHHHHHHH
T ss_pred HHHcCCEEEEECCcccHHHHHHHHHHHHH----hCcCCCeEEEEeCCChHHHHHHHhCCCcCEEEEeCcHHHHHHHHHHH
Confidence 99999999999999999999999999987 7 99999999996 667888888999999999999999999999877
Q ss_pred ---CCCEEEecCCcceEEEcCCCCHHHHHHHHHhhccCCCc-cccccceEEEcCcccChhhHHHHHHHHHHcCc------
Q 005041 504 ---KIPVLGHADGICHVYVDKSANLDVAKNIVIDAKIDYPA-ACNAMETLLVHKDLACNGALNELVVELQHEGV------ 573 (717)
Q Consensus 504 ---~~p~~lElGGk~p~iV~~dADl~~A~~~i~~~~~~n~g-~C~a~~rv~V~~~i~d~~f~~~l~~~~~~~~~------ 573 (717)
.||+++|||||||+||++||| |.|++.+++++|.|+| +|+|++|+|||+++| |+|+++|+++++++.+
T Consensus 261 a~~~k~v~lElGGk~p~IV~~dAD-~~Aa~~i~~~~f~n~GQ~C~a~~rvlV~~~i~-d~f~~~l~~~~~~~~vG~p~~~ 338 (497)
T 3i44_A 261 SNTLKRVCLELGGKGANIIFADAD-IDALQRGVRHCFYNSGQSCNAPTRMLVEQAIY-DKAIKTAKDIAEKTQVGPGHQT 338 (497)
T ss_dssp HTTTCEEEEECCCCCEEEECTTSC-TTHHHHHHHHHHGGGGCCTTCCCEEEEEGGGH-HHHHHHHHHHHHHCCBCCTTSC
T ss_pred hhcCCceeeccCCCCceEECCChh-HHHHHHHHHHHHhcCCCCcccCCEEEEcHHHH-HHHHHHHHHHHHhccCCCCCCC
Confidence 399999999999999999999 9999999999999987 999999999999999 8999999999887531
Q ss_pred ----------------------------eE-ecCc-cc----cccc--c-C-----CCCccccccccCceEEEEEeCCHH
Q 005041 574 ----------------------------GL-FGGP-RA----SKLL--Q-I-----PETRLFHHEYNSMVCTVEIVDDVR 611 (717)
Q Consensus 574 ----------------------------~~-~g~~-~~----~~~~--p-i-----~~~~~~~eE~FGPVl~v~~~~~~d 611 (717)
++ .|+. .. .++| | | ++|++++||+||||++|++|+|+|
T Consensus 339 ~~~~Gpli~~~~~~~v~~~i~~a~~~Ga~v~~gG~~~~~~~~~g~~~~PTvl~~v~~~~~i~~eEiFGPVl~v~~~~~~d 418 (497)
T 3i44_A 339 GNHIGPVVSKEQYDKIQDLIQSGIDEGATLVTGGTGLPMGMERGYYVRPTVFADVKPHMRIFREEIFGPVLSLLPFNTED 418 (497)
T ss_dssp SSCBCCCSCHHHHHHHHHHHHHHHHTTCEEEECCSSCCTTCCSSCCCCCEEEESCCTTSHHHHSCCCSSEEEEEEESSHH
T ss_pred CCccCCCcCHHHHHHHHHHHHHHHHCCCEEEECCCcCCCcCCCCcEECCEEEEeCCCCCHHHcCcccCceEEEEecCCHH
Confidence 22 2442 21 2333 5 2 468999999999999999999999
Q ss_pred HHHHHHHhcCCCceeEEEecCHHHHHHHHhcCCeeeEEEcCCCCCCCCCccCCccccccccCcccccccchhhcccEEEE
Q 005041 612 AAIDHIHQHGSAHTDCIVAEDQKVAETFLCQVDSAAVFHNASTRFCDGARFGLGAEVGISTSRIHARGPVGVEGLLTTRW 691 (717)
Q Consensus 612 eAi~~aN~~~~GL~a~I~t~d~~~a~~~~~~l~~G~v~iN~~~~~~~~~pfG~g~~~G~~~~~~~~~g~~g~~~ft~~k~ 691 (717)
|||+++|+++|||++||||+|.++++++++++++|+|+||. ....+..||||.+.||+| +++|++|+++||+.|+
T Consensus 419 eAi~~aN~~~~GL~a~v~t~d~~~a~~~a~~l~aG~V~iN~-~~~~~~~PfGG~k~SG~G----r~~G~~gl~~~t~~K~ 493 (497)
T 3i44_A 419 EAVTLANDTEYGLTNYIQSQDRSKCRRIAAQVRSGMVEVNG-HELPGGSYFGGVKFSGRA----REGGLWGIKEFLDTKA 493 (497)
T ss_dssp HHHHHHHCSSCCSEEEEECSCHHHHHHHHHHSCCSEEEETT-CCCCTTCCBCCSGGGCCC----CBSHHHHHHTTEEEEE
T ss_pred HHHHHHhCCCCCcEEEEECCCHHHHHHHHHhCCcCeEEECC-CCCCCCCCcCCcCcCcCC----ccchHHHHHHhcceeE
Confidence 99999999999999999999999999999999999999995 445678899999999986 4579999999999999
Q ss_pred EEe
Q 005041 692 ILR 694 (717)
Q Consensus 692 v~~ 694 (717)
|+.
T Consensus 494 v~~ 496 (497)
T 3i44_A 494 ISY 496 (497)
T ss_dssp ESC
T ss_pred EEe
Confidence 864
No 34
>2ve5_A BADH, betaine aldehyde dehydrogenase; aldehyde oxidation, NAD, NADP complex, oxidoreductase; HET: NAP CSO; 2.10A {Pseudomonas aeruginosa} PDB: 2wme_A* 2wox_A* 3zqa_A* 2xdr_A*
Probab=100.00 E-value=3.3e-77 Score=674.18 Aligned_cols=399 Identities=16% Similarity=0.191 Sum_probs=348.2
Q ss_pred HHHhcCCcceEEEecCCcccccHhhHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHhh
Q 005041 270 IKVLEGKRVGTLFHRDAHLWVKQVGAREMAVAARESSRRLQALQSQDRRKILLDVADALEANESLIKVENEADVAAAQEA 349 (717)
Q Consensus 270 ~~~~tg~~iGT~i~a~~~~~~~~~~v~~av~~A~~A~~~w~~~~~~~R~~~L~~~a~~l~~~~~el~~~~~~d~~~~~~~ 349 (717)
.+|.+|+.++++..++ .+|+++++++|++||+.|++++.++|.++|++++++|++|+++|++++++|++++..
T Consensus 27 ~~P~tg~~~~~~~~~~------~~~v~~av~~A~~A~~~w~~~~~~~R~~~L~~~a~~l~~~~~~la~~~~~e~Gk~~~- 99 (490)
T 2ve5_A 27 INPANGEVLAKVQRAS------REDVERAVQSAVEGQKVWAAMTAMQRSRILRRAVDILRERNDELAALETLDTGKPLA- 99 (490)
T ss_dssp ECTTTCCEEEEEECCC------HHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHCCCHH-
T ss_pred ECCCCCCEEEEEcCCC------HHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHH-
Confidence 4578999999998888 899999999999999999999999999999999999999999999999888765431
Q ss_pred chhHHHHHHhhcChhHHHHHHHHHHHHhcccccc-cccccccccCCCceEEEeecceeEEEEEcCC-Cch-hHHHHHHHH
Q 005041 350 GYAKSLVSRLALKPGKISSLAKSIRILADMEEPI-GQILKRTELADGLILEKTSCPLGVLLIVFES-RPD-ALVQIASLA 426 (717)
Q Consensus 350 g~~~a~~~~~~~~~~~i~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~PlGVV~~I~p~-~P~-~~~~~~~~A 426 (717)
++. ..|+...++.++++++..+.. +...+. ..+...+++++|+|||++|+|| ||. +.+++++||
T Consensus 100 ---ea~-------~~ev~~~~~~~~~~a~~~~~~~~~~~~~---~~~~~~~~~~~P~GVv~~I~pwN~P~~~~~~~~~~A 166 (490)
T 2ve5_A 100 ---ETR-------SVDIVTGADVLEYYAGLVPAIEGEQIPL---RETSFVYTRREPLGVVAGIGAWNYPVQIALWKSAPA 166 (490)
T ss_dssp ---HHT-------TTHHHHHHHHHHHHHHHGGGCCEEEEEE---ETTEEEEEEEEECSEEEEECCSSSHHHHHHHHHHHH
T ss_pred ---HHh-------HHHHHHHHHHHHHHHHHHHHhcCccccC---CCCceeeEeeccccEEEEECCCcchHHHHHHHHHHH
Confidence 211 126777788888877654432 332221 2355678899999999999998 786 567999999
Q ss_pred HHhCCEEEEeCCcchHHHHHHHHHHHHHhcccc-cCcCceEEecC-CChhhhhhcCCCCccEEEeecCHHHHHHHHhhc-
Q 005041 427 IRSGNGLLLKGGKEAMRSNAILHKVITSAIPDT-VGEKLIGLVTS-REEIPDLLKLDDVIDLVIPRGSNKLVSQIKEST- 503 (717)
Q Consensus 427 LaaGN~vVlKps~~tp~t~~~l~~~~~~al~~a-lP~gvv~vv~~-~~~~~~~l~~~~~v~~v~fTGs~~~g~~i~~~a- 503 (717)
|++||+||+|||+.||+|+.+|++++.+ + +|+|+||+|+| +.++++.|..||+||+|+||||+++||.|++.+
T Consensus 167 LaaGN~vVlKps~~tp~t~~~l~~l~~~----aGlP~gvv~vv~g~~~~~~~~L~~~p~vd~v~fTGS~~~g~~i~~~a~ 242 (490)
T 2ve5_A 167 LAAGNAMIFKPSEVTPLTALKLAEIYTE----AGVPDGVFNVLTGSGREVGQWLTEHPLIEKISFTGGTSTGKKVMASAS 242 (490)
T ss_dssp HHTTCEEEEECCTTSCHHHHHHHHHHHH----HTCCTTSEEECCSCTTTHHHHHHHCTTCCEEEEESCHHHHHHHHHHHH
T ss_pred HHcCCEEEEECCCcchHHHHHHHHHHHH----hCcCcCeEEEEeCCChHHHHHHHhCCCcCEEEEeCCcHHHHHHHHhch
Confidence 9999999999999999999999999987 7 99999999996 677888888999999999999999999999877
Q ss_pred ---CCCEEEecCCcceEEEcCCCCHHHHHHHHHhhccCCCc-cccccceEEEcCcccChhhHHHHHHHHHHcCc------
Q 005041 504 ---KIPVLGHADGICHVYVDKSANLDVAKNIVIDAKIDYPA-ACNAMETLLVHKDLACNGALNELVVELQHEGV------ 573 (717)
Q Consensus 504 ---~~p~~lElGGk~p~iV~~dADl~~A~~~i~~~~~~n~g-~C~a~~rv~V~~~i~d~~f~~~l~~~~~~~~~------ 573 (717)
.||+++|||||||+||++|||+|.|++.+++++|.|+| +|+|++|+|||+++| |+|+++|+++++++.+
T Consensus 243 a~~l~~v~lElGGk~p~iV~~dADl~~Aa~~i~~~~~~n~GQ~C~a~~rvlV~~~i~-d~f~~~l~~~~~~~~~g~p~d~ 321 (490)
T 2ve5_A 243 SSSLKEVTMELGGKSPLIIFPDADLDRAADIAVMANFFSSGQVCTNGTRVFIHRSQQ-ARFEAKVLERVQRIRLGDPQDE 321 (490)
T ss_dssp HHHCCEEEEECCCCCEEEECTTSCHHHHHHHHHHHHHGGGGCCTTCCCEEEEEGGGH-HHHHHHHHHHHHTCCBSCTTST
T ss_pred hccccceEEEcCCCceeEECCCCCHHHHHHHHHHHHHhcCCCCccCCCeEEEcHHHH-HHHHHHHHHHHHhccCCCCCCC
Confidence 49999999999999999999999999999999999987 999999999999999 8999999999887521
Q ss_pred ----------------------------eE-ecCccc------cccc--c-C-----CCCccccccccCceEEEEEeCCH
Q 005041 574 ----------------------------GL-FGGPRA------SKLL--Q-I-----PETRLFHHEYNSMVCTVEIVDDV 610 (717)
Q Consensus 574 ----------------------------~~-~g~~~~------~~~~--p-i-----~~~~~~~eE~FGPVl~v~~~~~~ 610 (717)
++ .|+... .++| | | ++|++++||+||||++|++|+|+
T Consensus 322 ~~~~gpli~~~~~~~v~~~i~~a~~~Ga~~~~gG~~~~~~~~~~g~~~~Ptvl~~v~~~~~i~~eEiFGPvl~v~~~~~~ 401 (490)
T 2ve5_A 322 NTNFGPLVSFPHMESVLGYIESGKAQKARLLCGGERVTDGAFGKGAYVAPTVFTDCRDDMTIVREEIFGPVMSILVYDDE 401 (490)
T ss_dssp TCCBCCCSCHHHHHHHHHHHHHHHHTTCEEEECCSBCCTTTGGGTTCBCCEEEESCCTTSHHHHSCCCSSEEEEEEESCH
T ss_pred CCccCCCCCHHHHHHHHHHHHHHHHCCCEEEeCCcccccccCCCCceEccEEEecCCCCCccccceeeCCeEEEEEeCCH
Confidence 22 244331 2333 5 2 46899999999999999999999
Q ss_pred HHHHHHHHhcCCCceeEEEecCHHHHHHHHhcCCeeeEEEcCCCCCCCCCccCCccccccccCcccccccchhhcccEEE
Q 005041 611 RAAIDHIHQHGSAHTDCIVAEDQKVAETFLCQVDSAAVFHNASTRFCDGARFGLGAEVGISTSRIHARGPVGVEGLLTTR 690 (717)
Q Consensus 611 deAi~~aN~~~~GL~a~I~t~d~~~a~~~~~~l~~G~v~iN~~~~~~~~~pfG~g~~~G~~~~~~~~~g~~g~~~ft~~k 690 (717)
||||+++|+++|||++||||+|.++++++++++++|+|+||+.....+.+||||.+.||+| +++|.+|+++||+.|
T Consensus 402 deAi~~aN~~~~gL~a~v~t~d~~~a~~~~~~l~aG~v~vN~~~~~~~~~pfGG~k~SG~G----~~~G~~~~~~f~~~k 477 (490)
T 2ve5_A 402 DEAIRRANDTEYGLAAGVVTQDLARAHRAIHRLEAGICWINTWGESPAEMPVGGYKQSGVG----RENGLTTLAHYTRIK 477 (490)
T ss_dssp HHHHHHHHCSSCCSEEEEECSBHHHHHHHHHHSCCSEEEESCCSCCCTTSCBCCSGGGEES----CBSHHHHHHTTEEEE
T ss_pred HHHHHHHhCCCCCceEEEEcCCHHHHHHHHHhCCcceEEECCCCCCCCCCCcCCCCCCCCC----CcchHHHHHHhheeE
Confidence 9999999999999999999999999999999999999999998777788999999999986 356999999999999
Q ss_pred EEEecCc
Q 005041 691 WILRGNG 697 (717)
Q Consensus 691 ~v~~~~~ 697 (717)
+|+++.+
T Consensus 478 ~v~~~~~ 484 (490)
T 2ve5_A 478 SVQVELG 484 (490)
T ss_dssp EEEEECS
T ss_pred EEEEccC
Confidence 9998765
No 35
>1euh_A NADP dependent non phosphorylating glyceraldehyde-3-phosphate dehydrogenase; oxidoreductase; 1.82A {Streptococcus mutans} SCOP: c.82.1.1 PDB: 1qi6_A 2euh_A* 2id2_A* 2qe0_A* 2esd_A* 1qi1_A*
Probab=100.00 E-value=3.3e-77 Score=671.23 Aligned_cols=396 Identities=17% Similarity=0.184 Sum_probs=345.9
Q ss_pred HHHhcCCcceEEEecCCcccccHhhHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHhh
Q 005041 270 IKVLEGKRVGTLFHRDAHLWVKQVGAREMAVAARESSRRLQALQSQDRRKILLDVADALEANESLIKVENEADVAAAQEA 349 (717)
Q Consensus 270 ~~~~tg~~iGT~i~a~~~~~~~~~~v~~av~~A~~A~~~w~~~~~~~R~~~L~~~a~~l~~~~~el~~~~~~d~~~~~~~ 349 (717)
.+|.+|+.++++..++ .+|+++++++|++||+.|+++|.++|.++|++++++|++|+++|++++++|++++..
T Consensus 23 ~~P~tg~~i~~~~~~~------~~~v~~av~~A~~A~~~w~~~~~~~R~~~L~~~a~~l~~~~~ela~~~~~e~Gk~~~- 95 (475)
T 1euh_A 23 YEPASGAELGSVPAMS------TEEVDYVYASAKKAQPAWRALSYIERAAYLHKVADILMRDKEKIGAILSKEVAKGYK- 95 (475)
T ss_dssp ECTTTCCEEEEEECCC------HHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHTCCHH-
T ss_pred ECCCCCCEEEEEeCCC------HHHHHHHHHHHHHHHHHhhhCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhCCCHH-
Confidence 5688999999998888 899999999999999999999999999999999999999999999999888765431
Q ss_pred chhHHHHHHhhcChhHHHHHHHHHHHHhccccc-ccccccccccCCC----ceE-EEeecceeEEEEEcCC-Cch-hHHH
Q 005041 350 GYAKSLVSRLALKPGKISSLAKSIRILADMEEP-IGQILKRTELADG----LIL-EKTSCPLGVLLIVFES-RPD-ALVQ 421 (717)
Q Consensus 350 g~~~a~~~~~~~~~~~i~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~----~~~-~~~~~PlGVV~~I~p~-~P~-~~~~ 421 (717)
++ ..|+..+++.++++++..+. .+...+.. ..+ ... +++++|+|||++|+|| ||. +.++
T Consensus 96 ---ea--------~~ev~~~~~~~~~~a~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~P~GVv~~I~PwN~P~~~~~~ 162 (475)
T 1euh_A 96 ---SA--------VSEVVRTAEIINYAAEEGLRMEGEVLEGG--SFEAASKKKIAVVRREPVGLVLAISPFNYPVNLAGS 162 (475)
T ss_dssp ---HH--------HHHHHHHHHHHHHHHHHHTTCCEEEEEGG--GTCGGGTTEEEEEEEEECSEEEEECCTTSTTHHHHH
T ss_pred ---HH--------HHHHHHHHHHHHHHHHHHHHhcCCcccCC--CCCccccceeeEEEEeccceEEEECCCCchHHHHHH
Confidence 22 24677888888888765443 34332211 123 356 8899999999999998 685 6679
Q ss_pred HHHHHHHhCCEEEEeCCcchHHHHHHHHHHHHHhcccc-cCcCceEEecC-CChhhhhhcCCCCccEEEeecCHHHHHHH
Q 005041 422 IASLAIRSGNGLLLKGGKEAMRSNAILHKVITSAIPDT-VGEKLIGLVTS-REEIPDLLKLDDVIDLVIPRGSNKLVSQI 499 (717)
Q Consensus 422 ~~~~ALaaGN~vVlKps~~tp~t~~~l~~~~~~al~~a-lP~gvv~vv~~-~~~~~~~l~~~~~v~~v~fTGs~~~g~~i 499 (717)
+++|||++||+||+|||+.||+|+.++++++.+ + ||+|++|+|+| ++++++.|..||+||+|+||||+++|+.|
T Consensus 163 ~~~~ALaaGN~vVlKps~~tp~t~~~l~~ll~~----aGlP~gvv~vv~g~~~~~~~~L~~~~~v~~V~fTGS~~~g~~i 238 (475)
T 1euh_A 163 KIAPALIAGNVIAFKPPTQGSISGLLLAEAFAE----AGLPAGVFNTITGRGSEIGDYIVEHQAVNFINFTGSTGIGERI 238 (475)
T ss_dssp HHHHHHHTTCEEEEECCSTTHHHHHHHHHHHHH----HTCCTTTEEECCCCHHHHHHHHHHCTTCCEEEEESCHHHHHHH
T ss_pred HHHHHHHcCCEEEEeCCCcChHHHHHHHHHHHH----hCCCcCeEEEEeCCcHHHHHHHHhCCCcCEEEEECchHHHHHH
Confidence 999999999999999999999999999999987 7 99999999996 45678888889999999999999999999
Q ss_pred Hhhc-CCCEEEecCCcceEEEcCCCCHHHHHHHHHhhccCCCc-cccccceEEEcCcccChhhHHHHHHHHHHcC-----
Q 005041 500 KEST-KIPVLGHADGICHVYVDKSANLDVAKNIVIDAKIDYPA-ACNAMETLLVHKDLACNGALNELVVELQHEG----- 572 (717)
Q Consensus 500 ~~~a-~~p~~lElGGk~p~iV~~dADl~~A~~~i~~~~~~n~g-~C~a~~rv~V~~~i~d~~f~~~l~~~~~~~~----- 572 (717)
++.+ .||+++|||||||+||++|||+|.|++.+++++|.|+| +|+|++|+|||+++| |+|+++|+++++++.
T Consensus 239 ~~~aa~~~v~lElGGk~p~iV~~dADl~~aa~~i~~~~~~n~GQ~C~a~~rv~V~~~i~-d~f~~~l~~~~~~~~~g~p~ 317 (475)
T 1euh_A 239 GKMAGMRPIMLELGGKDSAIVLEDADLELTAKNIIAGAFGYSGQRCTAVKRVLVMESVA-DELVEKIREKVLALTIGNPE 317 (475)
T ss_dssp HHHTTTSCEEEECCCCEEEEECTTSCHHHHHHHHHHHHHGGGGCCSSSEEEEEEEHHHH-HHHHHHHHHHHHTSCBSCGG
T ss_pred HHhcCCCcEEEEcCCcCeEEECCCCCHHHHHHHHHHHHhhcCCCcCCCCcEEEEehhHH-HHHHHHHHHHHHhccCCCcc
Confidence 9988 59999999999999999999999999999999999987 999999999999999 899999999987653
Q ss_pred ----------------------------ceEe-cCcccccc-c-c-C-----CCCccccccccCceEEEEEeCCHHHHHH
Q 005041 573 ----------------------------VGLF-GGPRASKL-L-Q-I-----PETRLFHHEYNSMVCTVEIVDDVRAAID 615 (717)
Q Consensus 573 ----------------------------~~~~-g~~~~~~~-~-p-i-----~~~~~~~eE~FGPVl~v~~~~~~deAi~ 615 (717)
+++. |+.. .++ + | | ++|++++||+||||++|++|+|+||||+
T Consensus 318 ~~~~~gpli~~~~~~~v~~~i~~a~~~Ga~~~~gG~~-~g~~~~Ptvl~~v~~~~~~~~eE~FGPvl~v~~~~~~~eai~ 396 (475)
T 1euh_A 318 DDADITPLIDTKSADYVEGLINDANDKGATALTEIKR-EGNLICPILFDKVTTDMRLAWEEPFGPVLPIIRVTSVEEAIE 396 (475)
T ss_dssp GTCSBCCCSCHHHHHHHHHHHHHHHHTTCEECSCCCE-ETTEECCEEEESCCTTSGGGTSCCCSSEEEEEEESCHHHHHH
T ss_pred ccCccCCCCCHHHHHHHHHHHHHHHHCCCEEEeCCcc-CCceeCCEEEeCCCCcCHHHcCccccceEEEEecCCHHHHHH
Confidence 1222 3322 233 3 5 2 3589999999999999999999999999
Q ss_pred HHHhcCCCceeEEEecCHHHHHHHHhcCCeeeEEEcC-CCCCCCCCccCCccccccccCcccccccchhhcccEEEEEEe
Q 005041 616 HIHQHGSAHTDCIVAEDQKVAETFLCQVDSAAVFHNA-STRFCDGARFGLGAEVGISTSRIHARGPVGVEGLLTTRWILR 694 (717)
Q Consensus 616 ~aN~~~~GL~a~I~t~d~~~a~~~~~~l~~G~v~iN~-~~~~~~~~pfG~g~~~G~~~~~~~~~g~~g~~~ft~~k~v~~ 694 (717)
++|+++|||++||||+|.++++++++++++|+|+||+ +....+.+||||.++||+| +++|++|+++||+.|+|.+
T Consensus 397 ~an~~~~gL~a~v~t~d~~~~~~~~~~l~~G~v~vN~~~~~~~~~~pfGG~k~SG~G----~~~g~~~~~~~~~~k~v~~ 472 (475)
T 1euh_A 397 ISNKSEYGLQASIFTNDFPRAFGIAEQLEVGTVHINNKTQRGTDNFPFLGAKKSGAG----IQGVKYSIEAMTTVKSVVF 472 (475)
T ss_dssp HHHHSSEESEEEEECSCHHHHHHHHHHSCSSEEEESSCCCCCSTTSCBCCEETTEES----CBSHHHHHHHTEEEEEEEE
T ss_pred HHhCCCCCeeEEEEeCCHHHHHHHHHhCCEeeEEECCCCCCCCCCCCcCCCCCCCcC----CCccHHHHHHhCCeeEEEE
Confidence 9999999999999999999999999999999999999 7666678999999999986 4579999999999999987
Q ss_pred c
Q 005041 695 G 695 (717)
Q Consensus 695 ~ 695 (717)
+
T Consensus 473 ~ 473 (475)
T 1euh_A 473 D 473 (475)
T ss_dssp E
T ss_pred e
Confidence 5
No 36
>1uzb_A 1-pyrroline-5-carboxylate dehydrogenase; oxidoreductase, riken structural genomics/proteomics initiative, RSGI, structural genomics; 1.4A {Thermus thermophilus} SCOP: c.82.1.1 PDB: 2eiw_A 2bhq_A* 2bhp_A* 2bja_A* 2bjk_A* 2ehq_A* 2ehu_A* 2eii_A* 2eit_A* 2ej6_A 2ejd_A* 2ejl_A 2iy6_A* 2j40_A* 2j5n_A*
Probab=100.00 E-value=7.2e-77 Score=673.94 Aligned_cols=400 Identities=16% Similarity=0.177 Sum_probs=341.5
Q ss_pred HHHHh-cCCcceEEEecCCcccccHhhHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHH
Q 005041 269 IIKVL-EGKRVGTLFHRDAHLWVKQVGAREMAVAARESSRRLQALQSQDRRKILLDVADALEANESLIKVENEADVAAAQ 347 (717)
Q Consensus 269 l~~~~-tg~~iGT~i~a~~~~~~~~~~v~~av~~A~~A~~~w~~~~~~~R~~~L~~~a~~l~~~~~el~~~~~~d~~~~~ 347 (717)
..+|. +++.++++..++ .+|+++++++|++||+.|+++|.++|.++|++++++|++|+++|++++++|++++.
T Consensus 55 ~~nP~~t~~~i~~~~~~~------~~~v~~av~aA~~A~~~w~~~~~~~R~~~L~~~a~~l~~~~~ela~~~~~e~Gk~~ 128 (516)
T 1uzb_A 55 SLNPSAPSEVVGTTAKAG------KAEAEAALEAAWKAFKTWKDWPQEDRSRLLLKAAALMRRRKRELEATLVYEVGKNW 128 (516)
T ss_dssp EEETTEEEEEEEEEECCC------HHHHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHCCCH
T ss_pred EECCCCCCcEEEEEeCCC------HHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCH
Confidence 36788 588999988888 89999999999999999999999999999999999999999999999988876543
Q ss_pred hhchhHHHHHHhhcChhHHHHHHHHHHHHhccccc-ccccccccccCCCceEEEeecceeEEEEEcCC-Cc-hhHHHHHH
Q 005041 348 EAGYAKSLVSRLALKPGKISSLAKSIRILADMEEP-IGQILKRTELADGLILEKTSCPLGVLLIVFES-RP-DALVQIAS 424 (717)
Q Consensus 348 ~~g~~~a~~~~~~~~~~~i~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~PlGVV~~I~p~-~P-~~~~~~~~ 424 (717)
. ++ ..|+..+++.++++++..+. .+...+... ..+...+++|+|+|||++|+|| || .+.+++++
T Consensus 129 ~----ea--------~~ev~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~~~~~~P~GVv~~I~PwN~P~~~~~~~~a 195 (516)
T 1uzb_A 129 V----EA--------SADVAEAIDFIEYYARAALRYRYPAVEVVP-YPGEDNESFYVPLGAGVVIAPWNFPVAIFTGMIV 195 (516)
T ss_dssp H----HH--------HHHHHHHHHHHHHHHHHHGGGCSSCCCCCC-CTTEEEEEEEEECCEEEEECCSSSTTHHHHHHHH
T ss_pred H----HH--------HHHHHHHHHHHHHHHHHHHHhcCCcccccC-CCCceEEEEEeccceEEEECCCccHHHHHHHHHH
Confidence 1 22 13566677777777654332 222211011 1345668899999999999998 69 46789999
Q ss_pred HHHHhCCEEEEeCCcchHHHHHHHHHHHHHhcccc-cCcCceEEecC-CChhhhhhcCCCCccEEEeecCHHHHHHHHhh
Q 005041 425 LAIRSGNGLLLKGGKEAMRSNAILHKVITSAIPDT-VGEKLIGLVTS-REEIPDLLKLDDVIDLVIPRGSNKLVSQIKES 502 (717)
Q Consensus 425 ~ALaaGN~vVlKps~~tp~t~~~l~~~~~~al~~a-lP~gvv~vv~~-~~~~~~~l~~~~~v~~v~fTGs~~~g~~i~~~ 502 (717)
|||++||+||+|||+.||+|+.+|++++.+ + ||+|++|+|+| +.++++.|..||+||+|+||||+++||.|++.
T Consensus 196 ~ALaaGN~VVlKps~~tp~ta~~l~~l~~e----aGlP~gvv~vv~g~~~~~~~~L~~~~~v~~I~FTGS~~~G~~i~~~ 271 (516)
T 1uzb_A 196 GPVAVGNTVIAKPAEDAVVVGAKVFEIFHE----AGFPPGVVNFLPGVGEEVGAYLVEHPRIRFINFTGSLEVGLKIYEA 271 (516)
T ss_dssp HHHHTTCEEEEECCGGGHHHHHHHHHHHHH----HTCCTTSEEECCCSSSHHHHHHHTCTTCCEEEEESCHHHHHHHHHH
T ss_pred HHHHcCCeEEEeCCCCCHHHHHHHHHHHHH----hCCCcCeEEEEeCCCchhhhhhhcCCCcCEEEecCCHHHHHHHHHH
Confidence 999999999999999999999999999997 7 99999999996 66788888889999999999999999999876
Q ss_pred c---------CCCEEEecCCcceEEEcCCCCHHHHHHHHHhhccCCCc-cccccceEEEcCcccChhhHHHHHHHHHHcC
Q 005041 503 T---------KIPVLGHADGICHVYVDKSANLDVAKNIVIDAKIDYPA-ACNAMETLLVHKDLACNGALNELVVELQHEG 572 (717)
Q Consensus 503 a---------~~p~~lElGGk~p~iV~~dADl~~A~~~i~~~~~~n~g-~C~a~~rv~V~~~i~d~~f~~~l~~~~~~~~ 572 (717)
+ .||+++|||||||+||++|||+|.|++.+++++|.|+| +|+|++|+|||+++| |+|+++|+++++++.
T Consensus 272 aa~~~~~~~~~~~v~lElGGk~p~iV~~dADl~~Aa~~i~~~~~~n~GQ~C~a~~rvlV~~~i~-d~f~~~l~~~~~~~~ 350 (516)
T 1uzb_A 272 AGRLAPGQTWFKRAYVETGGKNAIIVDETADFDLAAEGVVVSAYGFQGQKCSAASRLILTQGAY-EPVLERVLKRAERLS 350 (516)
T ss_dssp HTSCCTTCCSCCEEEEECCCCEEEEECTTSCHHHHHHHHHHHHHGGGGCSTTCEEEEEEEHHHH-HHHHHHHHHHHTTCC
T ss_pred hhhccccccccceeEEecCCccceeECCCCCHHHHHHHHHHHHHhCCCCccccCcEEEEchHHH-HHHHHHHHHHHHhcc
Confidence 5 48999999999999999999999999999999999986 999999999999999 899999999987643
Q ss_pred c--------------------------------eE-ecCcc--ccccc--c-C-----CCCccccccccCceEEEEEeCC
Q 005041 573 V--------------------------------GL-FGGPR--ASKLL--Q-I-----PETRLFHHEYNSMVCTVEIVDD 609 (717)
Q Consensus 573 ~--------------------------------~~-~g~~~--~~~~~--p-i-----~~~~~~~eE~FGPVl~v~~~~~ 609 (717)
+ ++ +|+.. ..++| | | ++|++++||+||||++|++|+|
T Consensus 351 ~G~p~~~~~~Gpli~~~~~~~v~~~i~~a~~~G~v~~gg~~~~~~g~~~~Ptvl~~v~~~~~i~~eEiFGPVl~v~~~~~ 430 (516)
T 1uzb_A 351 VGPAEENPDLGPVVSAEQERKVLSYIEIGKNEGQLVLGGKRLEGEGYFIAPTVFTEVPPKARIAQEEIFGPVLSVIRVKD 430 (516)
T ss_dssp BSCGGGCCSBCCCSCHHHHHHHHHHHHHHTTTSEEEECCSBCSSSSCCBCCEEEESCCTTSGGGTSCCCSSEEEEEEESS
T ss_pred CCCCccccccCCCCCHHHHHHHHHHHHHHHHCCCEEECCccCCCCCcEECCEEEECCCCCCHhhhccccCceEEEEEeCC
Confidence 1 22 35433 12333 5 3 3589999999999999999999
Q ss_pred HHHHHHHHHhcCCCceeEEEecCHHHHHHHHhcCCeeeEEEcCCCCC--CCCCccCCccccccccCcccccccchhhccc
Q 005041 610 VRAAIDHIHQHGSAHTDCIVAEDQKVAETFLCQVDSAAVFHNASTRF--CDGARFGLGAEVGISTSRIHARGPVGVEGLL 687 (717)
Q Consensus 610 ~deAi~~aN~~~~GL~a~I~t~d~~~a~~~~~~l~~G~v~iN~~~~~--~~~~pfG~g~~~G~~~~~~~~~g~~g~~~ft 687 (717)
+||||+++|+++|||++||||+|.++++++++++++|+|+||+++.. .+.+||||.+.||+|. +++|.+++++||
T Consensus 431 ~~eAi~~aN~~~~gL~a~v~t~d~~~a~~~~~~l~aG~v~iN~~~~~~~~~~~PfGG~k~SG~G~---~~~g~~~l~~f~ 507 (516)
T 1uzb_A 431 FAEALEVANDTPYGLTGGVYSRKREHLEWARREFHVGNLYFNRKITGALVGVQPFGGFKLSGTNA---KTGALDYLRLFL 507 (516)
T ss_dssp HHHHHHHHHCSSCCSEEEEECSCHHHHHHHHHHSCCSEEEESSCSCCCCTTTSCBCCSGGGBSCC---CBTSHHHHHTTE
T ss_pred HHHHHHHHhcCCCCceEEEECCCHHHHHHHHHhCCEeEEEEeCCCCCCCCCCCCCCCcCcCCCCC---ccchHHHHHHcC
Confidence 99999999999999999999999999999999999999999986543 4578999999998862 236889999999
Q ss_pred EEEEEEec
Q 005041 688 TTRWILRG 695 (717)
Q Consensus 688 ~~k~v~~~ 695 (717)
+.|+|+++
T Consensus 508 ~~k~v~~~ 515 (516)
T 1uzb_A 508 EMKAVAER 515 (516)
T ss_dssp EEEEEEEE
T ss_pred CeeEEEec
Confidence 99999864
No 37
>3sza_A Aldehyde dehydrogenase, dimeric NADP-preferring; ALDH, rossmann fold, oxidoreductase; 1.48A {Homo sapiens} SCOP: c.82.1.1 PDB: 3szb_A* 1ad3_A*
Probab=100.00 E-value=5.7e-77 Score=666.70 Aligned_cols=386 Identities=21% Similarity=0.228 Sum_probs=326.9
Q ss_pred HhhHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHhhchhHHHHHHhhcChhHHHHHHH
Q 005041 292 QVGAREMAVAARESSRRLQALQSQDRRKILLDVADALEANESLIKVENEADVAAAQEAGYAKSLVSRLALKPGKISSLAK 371 (717)
Q Consensus 292 ~~~v~~av~~A~~A~~~w~~~~~~~R~~~L~~~a~~l~~~~~el~~~~~~d~~~~~~~g~~~a~~~~~~~~~~~i~~~~~ 371 (717)
.+|+++++++|++||+.|++++.++|.++|++++++|++|+++|++++++|++++.. ++...++..+..+++++++
T Consensus 17 ~~dv~~av~aA~~A~~~w~~~~~~~R~~~L~~~a~~l~~~~~ela~~~~~e~Gk~~~----ea~~~ev~~~~~~~~~~~~ 92 (469)
T 3sza_A 17 MSKISEAVKRARAAFSSGRTRPLQFRIQQLEALQRLIQEQEQELVGALAADLHKNEW----NAYYEEVVYVLEEIEYMIQ 92 (469)
T ss_dssp -CHHHHHHHHHHHHHHTTTTCSHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHCCCHH----HHHHTTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhCCCHH----HHHHHHHHHHHHHHHHHHH
Confidence 579999999999999999999999999999999999999999999999988876532 3332334444567777778
Q ss_pred HHHHHhcccccccccccccccCCCceEEEeecceeEEEEEcCC-Cch-hHHHHHHHHHHhCCEEEEeCCcchHHHHHHHH
Q 005041 372 SIRILADMEEPIGQILKRTELADGLILEKTSCPLGVLLIVFES-RPD-ALVQIASLAIRSGNGLLLKGGKEAMRSNAILH 449 (717)
Q Consensus 372 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~PlGVV~~I~p~-~P~-~~~~~~~~ALaaGN~vVlKps~~tp~t~~~l~ 449 (717)
.++.|+... +.+.... ..+...+++|+|+|||++|+|| ||. +.+++++|||++||+||+||||.||+|+.+++
T Consensus 93 ~~~~~~~~~-~~~~~~~----~~~~~~~~~~~P~GVv~~I~PwN~P~~~~~~~~~~ALaaGN~vVlKps~~tp~t~~~l~ 167 (469)
T 3sza_A 93 KLPEWAADE-PVEKTPQ----TQQDELYIHSEPLGVVLVIGTWNYPFNLTIQPMVGAIAAGNAVVLKPSELSENMASLLA 167 (469)
T ss_dssp HHHHHHSCE-ECCCCGG----GTTSEEEEEEEECSEEEEECCSSSTTHHHHHHHHHHHHTTCEEEEECCTTSHHHHHHHH
T ss_pred HHHhhhccc-ccCcccc----CCCccceeeccCCCEEEEECCCcchHHHHHHHHHHHHHcCCEEEEECCCCChHHHHHHH
Confidence 777776421 1111111 1234578899999999999998 784 67899999999999999999999999999999
Q ss_pred HHHHHhcccccCcCceEEecCC-ChhhhhhcCCCCccEEEeecCHHHHHHHHhhc---CCCEEEecCCcceEEEcCCCCH
Q 005041 450 KVITSAIPDTVGEKLIGLVTSR-EEIPDLLKLDDVIDLVIPRGSNKLVSQIKEST---KIPVLGHADGICHVYVDKSANL 525 (717)
Q Consensus 450 ~~~~~al~~alP~gvv~vv~~~-~~~~~~l~~~~~v~~v~fTGs~~~g~~i~~~a---~~p~~lElGGk~p~iV~~dADl 525 (717)
+++.+ +||+|++|+|+|+ +.+++++ .| +||+|+||||+++||.|++.+ .||+++|||||||+||++|||+
T Consensus 168 ~l~~~----alP~gvv~vv~g~~~~~~~ll-~~-~vd~I~FTGS~~vG~~i~~~aa~~lkpv~lELGGk~p~iV~~dADl 241 (469)
T 3sza_A 168 TIIPQ----YLDKDLYPVINGGVPETTELL-KE-RFDHILYTGSTGVGKIIMTAAAKHLTPVTLELGGKSPCYVDKNCDL 241 (469)
T ss_dssp HHHHH----HSCTTTSCBCCCSHHHHHHHT-TS-CCSEEEEESCHHHHHHHHHHHHTTTCCEEEECCCCCEEEECTTSCH
T ss_pred HHHHH----hCCcceEEEEECCHHHHHHHH-hc-CCCEEEEECCHHHHHHHHHHHhhccCceEEecCCCCceEECCCCCH
Confidence 99986 5999999999964 4556655 46 799999999999999999877 3999999999999999999999
Q ss_pred HHHHHHHHhhccCCCc-cccccceEEEcCcccChhhHHHHHHHHHHc----------------------------CceE-
Q 005041 526 DVAKNIVIDAKIDYPA-ACNAMETLLVHKDLACNGALNELVVELQHE----------------------------GVGL- 575 (717)
Q Consensus 526 ~~A~~~i~~~~~~n~g-~C~a~~rv~V~~~i~d~~f~~~l~~~~~~~----------------------------~~~~- 575 (717)
|.|++.+++++|.|+| +|+|++|+|||+++| |+|+++|+++++++ |+++
T Consensus 242 ~~Aa~~i~~~~~~n~GQ~C~a~~rvlV~~~i~-d~f~~~l~~~~~~~~g~~~~~~~~~gpli~~~~~~rv~~~i~ga~v~ 320 (469)
T 3sza_A 242 DVACRRIAWGKFMNSGQTCVAPDYILCDPSIQ-NQIVEKLKKSLKEFYGEDAKKSRDYGRIISARHFQRVMGLIEGQKVA 320 (469)
T ss_dssp HHHHHHHHHHHHGGGGCCTTSCCEEEECGGGH-HHHHHHHHHHHHHHHCSCGGGCTTCCCCSCHHHHHHHHHHHTTSEEE
T ss_pred HHHHHHHHHHHHhcCCCCCCCCcEEEEehhHH-HHHHHHHHHHHHHhcCCCCcccCcccccCCHHHHHHHHHHHcCCEEE
Confidence 9999999999999987 999999999999999 89999999988763 1122
Q ss_pred ecCccc-cccc--c-C-----CCCccccccccCceEEEEEeCCHHHHHHHHHhcCCCceeEEEecCHHHHHHHHhcCCee
Q 005041 576 FGGPRA-SKLL--Q-I-----PETRLFHHEYNSMVCTVEIVDDVRAAIDHIHQHGSAHTDCIVAEDQKVAETFLCQVDSA 646 (717)
Q Consensus 576 ~g~~~~-~~~~--p-i-----~~~~~~~eE~FGPVl~v~~~~~~deAi~~aN~~~~GL~a~I~t~d~~~a~~~~~~l~~G 646 (717)
.|+... .++| | | ++|++++||+||||++|++|+|+||||+++|+++|||++||||+|.++++++++++++|
T Consensus 321 ~GG~~~~~g~~~~PTvl~~v~~~~~i~~eEiFGPVl~v~~~~~~deAi~~aN~~~~gLaa~v~t~d~~~a~~~~~~l~~G 400 (469)
T 3sza_A 321 YGGTGDAATRYIAPTILTDVDPQSPVMQEEIFGPVLPIVCVRSLEEAIQFINQREKPLALYMFSSNDKVIKKMIAETSSG 400 (469)
T ss_dssp ECCCEETTTTEECCEEEESCCTTSGGGTSCCCSSEEEEEECSSHHHHHHHHHHSCCCSEEEEECSCHHHHHHHHHHCCCS
T ss_pred eCCccCCCCceeCCeeecCCCCcchhhhccccCCeEEEEecCCHHHHHHHHHcCCCCceEEEECCCHHHHHHHHHhCCcc
Confidence 243321 2333 5 2 46899999999999999999999999999999999999999999999999999999999
Q ss_pred eEEEcCCCC--CCCCCccCCccccccccCcccccccchhhcccEEEEEEecCc
Q 005041 647 AVFHNASTR--FCDGARFGLGAEVGISTSRIHARGPVGVEGLLTTRWILRGNG 697 (717)
Q Consensus 647 ~v~iN~~~~--~~~~~pfG~g~~~G~~~~~~~~~g~~g~~~ft~~k~v~~~~~ 697 (717)
+|+||+... ..+..||||.++||+| +++|.+|+++||+.|+|+++..
T Consensus 401 ~V~vN~~~~~~~~~~~PfGG~k~SG~G----r~~G~~g~~~ft~~K~v~~~~~ 449 (469)
T 3sza_A 401 GVAANDVIVHITLHSLPFGGVGNSGMG----SYHGKKSFETFSHRRSCLVRPL 449 (469)
T ss_dssp EEEESCSSGGGSCTTSCBCCCGGGEEC----CBSTHHHHHHTEEEEEEEECCS
T ss_pred eEEEeCCCCCCCCCCCCcCCccccccC----ccchHHHHHHhhCeeEEEECCc
Confidence 999999763 3578899999999996 3579999999999999998643
No 38
>3etf_A Putative succinate-semialdehyde dehydrogenase; center for ST genomics of infectious diseases, oxidoreductase, csgid; 1.85A {Salmonella typhimurium} PDB: 3efv_A
Probab=100.00 E-value=4.7e-77 Score=668.58 Aligned_cols=395 Identities=15% Similarity=0.213 Sum_probs=340.6
Q ss_pred HHhcCCcceEEEecCCcccccHhhHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHhhc
Q 005041 271 KVLEGKRVGTLFHRDAHLWVKQVGAREMAVAARESSRRLQALQSQDRRKILLDVADALEANESLIKVENEADVAAAQEAG 350 (717)
Q Consensus 271 ~~~tg~~iGT~i~a~~~~~~~~~~v~~av~~A~~A~~~w~~~~~~~R~~~L~~~a~~l~~~~~el~~~~~~d~~~~~~~g 350 (717)
+|.+|+.++++..++ .+++++++++|++||+.|+++|.++|.++|++++++|++|+++|++++++|+|++..
T Consensus 13 ~P~t~~~i~~~~~~~------~~~v~~av~~A~~A~~~w~~~~~~~R~~~L~~~a~~l~~~~~ela~~~~~e~Gk~~~-- 84 (462)
T 3etf_A 13 NPATGQTLAAMPWAN------AQEIEHALSLAASGFKKWKMTSVAQRAQTLRDIGQALRAHAEEMAQCITREMGKPIK-- 84 (462)
T ss_dssp CTTTCCEEEECCCCC------HHHHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHCCCHH--
T ss_pred CCCCCCEEEEecCCC------HHHHHHHHHHHHHHHHHhhhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHH--
Confidence 478999999988888 899999999999999999999999999999999999999999999999888765432
Q ss_pred hhHHHHHHhhcChhHHHHHHHHHHHHhccccc-ccccccccccCCCceEEEeecceeEEEEEcCC-Cch-hHHHHHHHHH
Q 005041 351 YAKSLVSRLALKPGKISSLAKSIRILADMEEP-IGQILKRTELADGLILEKTSCPLGVLLIVFES-RPD-ALVQIASLAI 427 (717)
Q Consensus 351 ~~~a~~~~~~~~~~~i~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~PlGVV~~I~p~-~P~-~~~~~~~~AL 427 (717)
++ ..|+..+++.+++++...+. .+.. +. ...+...+++++|+|||++|+|| ||. +.++++++||
T Consensus 85 --~a--------~~ev~~~~~~~~~~a~~~~~~~~~~-~~--~~~~~~~~~~~~P~GVv~~I~PwN~P~~~~~~~~~~AL 151 (462)
T 3etf_A 85 --QA--------RAEVTKSAALCDWYAEHGPAMLNPE-PT--LVENQQAVIEYRPLGVILAIMPWNFPLWQVLRGAVPIL 151 (462)
T ss_dssp --HH--------HHHHHHHHHHHHHHHHHHHHHTSCE-EC--SSGGGCEEEEEEECSEEEEECCSSSTTHHHHHHHHHHH
T ss_pred --HH--------HHHHHHHHHHHHHHHHhHHHhcCCc-cc--CCCCceeEEEeecCcEEEEECCCchHHHHHHHHHHHHH
Confidence 22 23566666777776654322 2222 11 11244678899999999999998 685 6789999999
Q ss_pred HhCCEEEEeCCcchHHHHHHHHHHHHHhcccc-cCcCceEEecCCChhhhhhcCCCCccEEEeecCHHHHHHHHhhc---
Q 005041 428 RSGNGLLLKGGKEAMRSNAILHKVITSAIPDT-VGEKLIGLVTSREEIPDLLKLDDVIDLVIPRGSNKLVSQIKEST--- 503 (717)
Q Consensus 428 aaGN~vVlKps~~tp~t~~~l~~~~~~al~~a-lP~gvv~vv~~~~~~~~~l~~~~~v~~v~fTGs~~~g~~i~~~a--- 503 (717)
++||+||+||||.||+|+.++++++.+ + +|+|++|+|+|+.+.++.|..||+||+|+||||+++|+.|++.+
T Consensus 152 aaGN~VvlKps~~tp~~~~~l~~~l~~----aglP~gv~~vv~g~~~~~~~l~~~~~v~~v~fTGS~~~g~~i~~~aa~~ 227 (462)
T 3etf_A 152 LAGNSYLLKHAPNVTGCAQMIARILAE----AGTPAGVYGWVNANNEGVSQMINDPRIAAVTVTGSVRAGAAIGAQAGAA 227 (462)
T ss_dssp HTTCEEEEECCTTCHHHHHHHHHHHHH----TTCCBTTEEECCCCHHHHHHHHTSTTEEEEEEESCHHHHHHHHHHHHHT
T ss_pred hcCCEEEEECCCCCcHHHHHHHHHHHH----hCCCcCeEEEEECCHHHHHHHhcCCCCCEEEEeCCchHHHHHHHHHhcc
Confidence 999999999999999999999999987 7 99999999997555667777899999999999999999998877
Q ss_pred CCCEEEecCCcceEEEcCCCCHHHHHHHHHhhccCCCc-cccccceEEEcCcccChhhHHHHHHHHHHcC----------
Q 005041 504 KIPVLGHADGICHVYVDKSANLDVAKNIVIDAKIDYPA-ACNAMETLLVHKDLACNGALNELVVELQHEG---------- 572 (717)
Q Consensus 504 ~~p~~lElGGk~p~iV~~dADl~~A~~~i~~~~~~n~g-~C~a~~rv~V~~~i~d~~f~~~l~~~~~~~~---------- 572 (717)
.||+++|||||||+||++|||+|.|++.+++++|.|+| +|+|++|+|||+++| |+|+++|+++++++.
T Consensus 228 ~~~v~lElGGk~p~iV~~dADl~~Aa~~i~~~~~~n~GQ~C~a~~rvlV~~~i~-d~f~~~l~~~~~~~~~G~p~~~~~~ 306 (462)
T 3etf_A 228 LKKCVLELGGSDPFIVLNDADLELAVKAAVAGRYQNTGQVCAAAKRFIVEEGIA-QAFTDRFVAAAAALKMGDPLVEEND 306 (462)
T ss_dssp TCCEEEECCCCEEEEECTTSCHHHHHHHHHHHHHGGGGCCTTCEEEEEEEHHHH-HHHHHHHHHHHHHCCBSCTTSTTCS
T ss_pred CCceEEEcCCCCccEECCCCCHHHHHHHHHHHHHhcCCCcccCCcEEEEehhHH-HHHHHHHHHHHHhhcCCCCccccCc
Confidence 49999999999999999999999999999999999987 999999999999999 899999999988752
Q ss_pred ------------------------ceE-ecCcc--cccc-c-c-C-----CCCccccccccCceEEEEEeCCHHHHHHHH
Q 005041 573 ------------------------VGL-FGGPR--ASKL-L-Q-I-----PETRLFHHEYNSMVCTVEIVDDVRAAIDHI 617 (717)
Q Consensus 573 ------------------------~~~-~g~~~--~~~~-~-p-i-----~~~~~~~eE~FGPVl~v~~~~~~deAi~~a 617 (717)
+++ +|+.. ..++ + | | ++|++++||+||||++|++|+|+||||+++
T Consensus 307 ~gpli~~~~~~~v~~~i~~a~~~ga~~~~gg~~~~~~g~~~~Ptvl~~v~~~~~~~~eE~FGPVl~v~~~~~~deAi~~a 386 (462)
T 3etf_A 307 LGPMARFDLRDELHQQVQASVAEGARLLLGGEKIAGEGNYYAATVLADVTPDMTAFRQELFGPVAAITVAKDAAHALALA 386 (462)
T ss_dssp BCCCSCHHHHHHHHHHHHHHHHTTCEEEECCSBCSSSSCCBCCEEEESCCTTSHHHHSCCCSSEEEEEEESSHHHHHHHH
T ss_pred ccCCCCHHHHHHHHHHHHHHHHCCCEEEeCCcccCCCCcEEeeEEEECCCCCChhhcCceeCcEEEEEEcCCHHHHHHHH
Confidence 122 23322 1233 3 5 2 368999999999999999999999999999
Q ss_pred HhcCCCceeEEEecCHHHHHHHHhcCCeeeEEEcCCCCCCCCCccCCccccccccCcccccccchhhcccEEEEEEec
Q 005041 618 HQHGSAHTDCIVAEDQKVAETFLCQVDSAAVFHNASTRFCDGARFGLGAEVGISTSRIHARGPVGVEGLLTTRWILRG 695 (717)
Q Consensus 618 N~~~~GL~a~I~t~d~~~a~~~~~~l~~G~v~iN~~~~~~~~~pfG~g~~~G~~~~~~~~~g~~g~~~ft~~k~v~~~ 695 (717)
|+++|||++||||+|.++++++++++++|+|+||++....+..||||++.||+| +++|++|+++||+.|+|+++
T Consensus 387 n~~~~gL~a~v~t~d~~~a~~~~~~l~aG~v~vN~~~~~~~~~PfGG~k~SG~G----~~~g~~g~~~~~~~k~v~~~ 460 (462)
T 3etf_A 387 NDSEFGLSATIFTADDTLAAEMAARLECGGVFINGYSASDARVAFGGVKKSGFG----RELSHFGLHEFCNVQTVWKN 460 (462)
T ss_dssp HCSSCCSCEEEECSCHHHHHHHHHHCCSSEEEESSCCCCCTTSCBCCSGGGEEC----CBSHHHHHHTTEEEEEEEEC
T ss_pred hCCCCCceEEEECCCHHHHHHHHHhCCcceEEECCCCCCCCCCCcCCcCCCCCC----ccchHHHHHHHhceeEEEEe
Confidence 999999999999999999999999999999999998777788999999999986 35699999999999999875
No 39
>4h7n_A Aldehyde dehydrogenase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, ALDH_ddaldh, COG1012, glyco_hydro_97; 2.00A {Anabaena variabilis}
Probab=100.00 E-value=2.7e-77 Score=671.68 Aligned_cols=398 Identities=16% Similarity=0.116 Sum_probs=336.0
Q ss_pred HHHhcCCcceEEEecCCcccccHhhHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHhh
Q 005041 270 IKVLEGKRVGTLFHRDAHLWVKQVGAREMAVAARESSRRLQALQSQDRRKILLDVADALEANESLIKVENEADVAAAQEA 349 (717)
Q Consensus 270 ~~~~tg~~iGT~i~a~~~~~~~~~~v~~av~~A~~A~~~w~~~~~~~R~~~L~~~a~~l~~~~~el~~~~~~d~~~~~~~ 349 (717)
.+|.||+.++++..++ ++|+++|+++|++||+.|+++|.++|.++|++++++|++|+++|++++++|+||...
T Consensus 11 ~nP~tg~~~~~~~~~~------~~~v~~av~~A~~A~~~W~~~~~~~R~~~L~~~a~~l~~~~~ela~~~~~e~Gk~~~- 83 (474)
T 4h7n_A 11 RNPRTGKFDYVIIPPP------PRLLAQQCNRARRAQSRWQELGVEGRITTLQQWKQAILSRREQLTEALVNDTGRLSI- 83 (474)
T ss_dssp ECTTTCSEEEEECCCC------HHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHSCSHH-
T ss_pred ECCCCCCEEEEEcCCC------HHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcHH-
Confidence 4588999999988888 899999999999999999999999999999999999999999999999888765321
Q ss_pred chhHHHHHHhhcChhHHHHHHHHHHHHhccccc-ccccccccccCCCceEEEeecceeEEEEEcCC-Cch-hHHHHHHHH
Q 005041 350 GYAKSLVSRLALKPGKISSLAKSIRILADMEEP-IGQILKRTELADGLILEKTSCPLGVLLIVFES-RPD-ALVQIASLA 426 (717)
Q Consensus 350 g~~~a~~~~~~~~~~~i~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~PlGVV~~I~p~-~P~-~~~~~~~~A 426 (717)
+ ..|+..++..+++|+..... ...... ....++...+.+++|+|||++|+|| ||. +.+++++||
T Consensus 84 ----~--------~~ev~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~P~GVv~~I~PwNfP~~~~~~~~~~A 150 (474)
T 4h7n_A 84 ----T--------VLEIDSFLASIDRWCGLAPELLQTSAK-NTSIPFIALQQSLVPYPLVGVISPWNFPLTLSMIDTIPA 150 (474)
T ss_dssp ----H--------HHHHHHHHHHHHHHHHHHHHHHCCEEE-ECSSTTEEEEEEEEECSEEEEEECSSSHHHHHHTTHHHH
T ss_pred ----H--------HHHHHHHHHHHHHHHhhhhhccccccc-CCCCCCccceEEEEeccEEEEECCCCcHHHHHhcccCcc
Confidence 1 23566666677766543321 111111 1112344566788999999999998 785 677999999
Q ss_pred HHhCCEEEEeCCcchHHHHHHHHHHHHHhcccc-cCcCceEEecCCChhhhhhcCCCCccEEEeecCHHHHHHHHhhc--
Q 005041 427 IRSGNGLLLKGGKEAMRSNAILHKVITSAIPDT-VGEKLIGLVTSREEIPDLLKLDDVIDLVIPRGSNKLVSQIKEST-- 503 (717)
Q Consensus 427 LaaGN~vVlKps~~tp~t~~~l~~~~~~al~~a-lP~gvv~vv~~~~~~~~~l~~~~~v~~v~fTGs~~~g~~i~~~a-- 503 (717)
|++||+||+||||.||+|+..+++++.+ + +|+|++|+|+|+.+.+..|..| +|+|+||||+++||.|++.+
T Consensus 151 LaaGN~VVlKps~~tp~~~~~l~~~~~~----ag~p~gv~~~v~g~~~~~~~l~~~--v~~v~FTGS~~~G~~i~~~aa~ 224 (474)
T 4h7n_A 151 LLAGCAVVVKPSEIAPRFVAPLLMALNT----VPELRDVLIFVEGGGETGANLINY--VDFVCFTGSVATGREVAETAAR 224 (474)
T ss_dssp HHHTCEEEEEECTTSCTTHHHHHHHHTT----CTTTTTTEEECCCCHHHHHHHHTT--CSEEEEESCHHHHHHHHHHHHH
T ss_pred hhcCCceeecccccCchHHHHHHhhhhh----hcccccceeeccccchhhhhhhhc--cceEEeccccchhhhhhhhhhc
Confidence 9999999999999999999999999876 7 9999999999766677777765 99999999999999998877
Q ss_pred -CCCEEEecCCcceEEEcCCCCHHHHHHHHHhhccCCCc-cccccceEEEcCcccChhhHHHHHHHHHHcCc--------
Q 005041 504 -KIPVLGHADGICHVYVDKSANLDVAKNIVIDAKIDYPA-ACNAMETLLVHKDLACNGALNELVVELQHEGV-------- 573 (717)
Q Consensus 504 -~~p~~lElGGk~p~iV~~dADl~~A~~~i~~~~~~n~g-~C~a~~rv~V~~~i~d~~f~~~l~~~~~~~~~-------- 573 (717)
.||++||||||||+||++|||++.|++.+++++|.|+| +|+|++|+|||+++| |+|+++|+++++++.+
T Consensus 225 ~~~~v~lElGGk~p~iV~~dAdl~~aa~~i~~~~~~n~GQ~C~a~~rv~V~~~i~-d~f~~~l~~~~~~~~~g~p~~~~~ 303 (474)
T 4h7n_A 225 RFIPAYLELGGKDPAIVLESANLELATSAILWGAVVNTGQSCLSIERIYVAESKF-EEFYHQLIAKAHRLQLAYPLVEDG 303 (474)
T ss_dssp HTCCEEEECCCCEEEEECTTSCHHHHHHHHHHHHHGGGGCSTTCEEEEEEEGGGH-HHHHHHHHHHHHHCCBCCSSGGGC
T ss_pred ccccccccCCCcCccccCchhhHHHHHHHHHhhhccCCCCceeecccccchHHHH-HHHHHHHHHHhhccccCCCccccc
Confidence 59999999999999999999999999999999999987 999999999999999 8999999999887532
Q ss_pred --------------------------eE-ecCccc---cccc--c-C-----CCCccccccccCceEEEEEeCCHHHHHH
Q 005041 574 --------------------------GL-FGGPRA---SKLL--Q-I-----PETRLFHHEYNSMVCTVEIVDDVRAAID 615 (717)
Q Consensus 574 --------------------------~~-~g~~~~---~~~~--p-i-----~~~~~~~eE~FGPVl~v~~~~~~deAi~ 615 (717)
.+ .|+... .++| | | ++|++++||+||||++|++|+|+||||+
T Consensus 304 ~~gpli~~~~~~~v~~~i~~a~~~ga~v~~Gg~~~~~~~g~~~~Ptv~~~v~~~~~i~~eEiFGPVl~v~~~~~~deAi~ 383 (474)
T 4h7n_A 304 AIGPIIAEKQAGIINDHILDAVEKGAVIHCGGKVEELGGGWWCRPTVMTNVNHSMKVMTEETFGPIMPVMPFPDVEEAVY 383 (474)
T ss_dssp SBCCCSSHHHHHHHHHHHHHHHHTTCEEEECCCCEEETTEEECCCEEEESCCTTSGGGTSCCCSSEEEEEEESSHHHHHH
T ss_pred ccCccccHHHHHHHHHHHHHHHhhCceeccCCcccccCCCcccCceeEEeeccccccccccccCcEEEEEEECCHHHHHH
Confidence 11 122211 1222 5 2 4689999999999999999999999999
Q ss_pred HHHhcCCCceeEEEecCHHHHHHHHhcCCeeeEEEcCCCCC--CCCCccCCccccccccCcccccccchhhcccEEEEEE
Q 005041 616 HIHQHGSAHTDCIVAEDQKVAETFLCQVDSAAVFHNASTRF--CDGARFGLGAEVGISTSRIHARGPVGVEGLLTTRWIL 693 (717)
Q Consensus 616 ~aN~~~~GL~a~I~t~d~~~a~~~~~~l~~G~v~iN~~~~~--~~~~pfG~g~~~G~~~~~~~~~g~~g~~~ft~~k~v~ 693 (717)
++|+++|||++||||+|.++++++++++++|+|+||+++.. .+.+||||.+.||+|. ++.|.+|+++|++.|+|+
T Consensus 384 ~aN~~~~GL~a~v~t~d~~~a~~~a~~l~aG~v~iN~~~~~~~~~~~pfgG~~~SG~G~---~~~G~~g~~~f~~~k~v~ 460 (474)
T 4h7n_A 384 LANDTIYGLSAAVFAGSEDEALKVARQLNAGAISINDAALTAMMHEGEKNAFNFSGLGG---SRVGAAGLKRFLRKQAFL 460 (474)
T ss_dssp HHHCSSCCSEEEEECSSHHHHHHHHTTSCCSEEEESSSCGGGTCCCSCCCCCGGGEESC---CSSTTHHHHTTEEEEEEE
T ss_pred HHHcCCCCCeEEEEeCCHHHHHHHHHhCCeeEEEECCCCccCCcCCCCCCCcCCCCCCC---CcchHHHHHHhCeEEEEE
Confidence 99999999999999999999999999999999999987643 4578999999999863 235899999999999999
Q ss_pred ecCc
Q 005041 694 RGNG 697 (717)
Q Consensus 694 ~~~~ 697 (717)
++..
T Consensus 461 ~~~~ 464 (474)
T 4h7n_A 461 IKTN 464 (474)
T ss_dssp EECS
T ss_pred ECCC
Confidence 8654
No 40
>4dng_A Uncharacterized aldehyde dehydrogenase ALDY; structural genomics, protein structure initiative, nysgrc, P biology; 2.50A {Bacillus subtilis}
Probab=100.00 E-value=6.5e-77 Score=670.94 Aligned_cols=399 Identities=17% Similarity=0.183 Sum_probs=327.2
Q ss_pred HHHhcCCcceEEEecCCcccccHhhHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHhh
Q 005041 270 IKVLEGKRVGTLFHRDAHLWVKQVGAREMAVAARESSRRLQALQSQDRRKILLDVADALEANESLIKVENEADVAAAQEA 349 (717)
Q Consensus 270 ~~~~tg~~iGT~i~a~~~~~~~~~~v~~av~~A~~A~~~w~~~~~~~R~~~L~~~a~~l~~~~~el~~~~~~d~~~~~~~ 349 (717)
.+|.+++.++++..++ .+|+++++++|++||+.|+++|.++|.++|++++++|++|+++|++++++|++++.
T Consensus 27 ~~P~t~~~~~~~~~~~------~~~v~~av~~A~~A~~~w~~~~~~~R~~~L~~~a~~l~~~~~ela~~~~~e~Gk~~-- 98 (485)
T 4dng_A 27 LNPYDQSVITTASLAT------GKQLEDAFDIAQKAQKEWAKSTTEDRKAVLQKARGYLHENRDDIIMMIARETGGTI-- 98 (485)
T ss_dssp ECTTTCCEEEEEECCC------HHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHCCCH--
T ss_pred ECCCCCCEEEEEcCCC------HHHHHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCH--
Confidence 4688999999998888 89999999999999999999999999999999999999999999999888775532
Q ss_pred chhHHHHHHhhcChhHHHHHHHHHHHHhcccccc-cccccccccCCCceEEEeecceeEEEEEcCC-Cch-hHHHHHHHH
Q 005041 350 GYAKSLVSRLALKPGKISSLAKSIRILADMEEPI-GQILKRTELADGLILEKTSCPLGVLLIVFES-RPD-ALVQIASLA 426 (717)
Q Consensus 350 g~~~a~~~~~~~~~~~i~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~PlGVV~~I~p~-~P~-~~~~~~~~A 426 (717)
.++ ..|+..+++.+++++...+.. +...+. ....+...+++++|+|||++|+|| ||. +.++++++|
T Consensus 99 --~~a--------~~ev~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~~~~~~P~GVv~~I~PwN~P~~~~~~~~~~A 167 (485)
T 4dng_A 99 --IKS--------TIELEQTIAILDEAMTYTGELGGVKEVP-SDIEGKTNKIYRLPLGVISSISPFNFPMNLSMRSIAPA 167 (485)
T ss_dssp --HHH--------HHHHHHHHHHHHHHHHHGGGCSCEECCC-CSSTTEEEEEEEEECCEEEEECCSSSHHHHHHHHHHHH
T ss_pred --HHH--------HHHHHHHHHHHHHHHHHHHHhCCeeccc-cCCCCceEEEEEecceEEEEECCCccHHHHHHHHHHHH
Confidence 122 236788888888888665443 322221 112346778899999999999998 685 678999999
Q ss_pred HHhCCEEEEeCCcchHHHH-HHHHHHHHHhcccc-cCcCceEEecC-CChhhhhhcCCCCccEEEeecCHHHHHHHHhhc
Q 005041 427 IRSGNGLLLKGGKEAMRSN-AILHKVITSAIPDT-VGEKLIGLVTS-REEIPDLLKLDDVIDLVIPRGSNKLVSQIKEST 503 (717)
Q Consensus 427 LaaGN~vVlKps~~tp~t~-~~l~~~~~~al~~a-lP~gvv~vv~~-~~~~~~~l~~~~~v~~v~fTGs~~~g~~i~~~a 503 (717)
|++||+||+|||+.||+|+ .++++++.+ + +|+|+||+|+| ++++++.|..||+||+|+||||+++||.|++.+
T Consensus 168 LaaGN~VVlKps~~tp~~~~~~l~~~l~~----aGlP~gvv~vv~g~~~~~~~~L~~~p~v~~v~fTGS~~~g~~i~~~a 243 (485)
T 4dng_A 168 IALGNSVVHKPDIQTAISGGTIIAKAFEH----AGLPAGVLNVMLTDVKEIGDGMLTNPIPRLISFTGSTAVGRHIGEIA 243 (485)
T ss_dssp HHTTCEEEEECCGGGHHHHTHHHHHHHHH----TTCCTTSEEECCCCHHHHTTHHHHCSSCSEEEEEECHHHHHHHHHHH
T ss_pred HHcCCEEEEECCCcChHHHHHHHHHHHHH----hCcCCCeEEEEeCCChhHHHHHHhCCCCCEEEEECCcHHHHHHHHHH
Confidence 9999999999999999999 999999987 8 99999999996 556888888999999999999999999999877
Q ss_pred ---CCCEEEecCCcceEEEcCCCCHHHHHHHHHhhccCCCc-cccccceEEEcCcccChhhHHHHHHHHHHcCc------
Q 005041 504 ---KIPVLGHADGICHVYVDKSANLDVAKNIVIDAKIDYPA-ACNAMETLLVHKDLACNGALNELVVELQHEGV------ 573 (717)
Q Consensus 504 ---~~p~~lElGGk~p~iV~~dADl~~A~~~i~~~~~~n~g-~C~a~~rv~V~~~i~d~~f~~~l~~~~~~~~~------ 573 (717)
.||+++|||||||+||++|||+|.|++.+++++|.|+| +|+|++|||||+++| |+|+++|+++++++.+
T Consensus 244 a~~~~~v~lElGGk~p~iV~~dADl~~Aa~~i~~~~~~~~GQ~C~a~~rvlV~~~i~-d~f~~~l~~~~~~~~~g~~~~~ 322 (485)
T 4dng_A 244 GRAFKRMALELGGNNPFAVLSDADVDRAVDAAIFGKFIHQGQICMIINRIIVHQDVY-DEFVEKFTARVKQLPYGDQTDP 322 (485)
T ss_dssp HHHTCEEEEEECCCEEEEECTTSCHHHHHHHHHHHHTTCC----CCEEEEEEEHHHH-HHHHHHHHHHHHHCCBSCTTST
T ss_pred hhhccchhhhcCCCCceEEcCCCCHHHHHHHHHHHHHhcCCCccccCCEEEEeHHHH-HHHHHHHHHHHHhccCCCCCcC
Confidence 59999999999999999999999999999999999987 999999999999999 8999999999987532
Q ss_pred ----------------------------eE-ecCccccccc--c-C-----CCCccccccccCceEEEEEeCCHHHHHHH
Q 005041 574 ----------------------------GL-FGGPRASKLL--Q-I-----PETRLFHHEYNSMVCTVEIVDDVRAAIDH 616 (717)
Q Consensus 574 ----------------------------~~-~g~~~~~~~~--p-i-----~~~~~~~eE~FGPVl~v~~~~~~deAi~~ 616 (717)
++ .|+.+ .++| | | ++|++++||+||||++|++|+|+||||++
T Consensus 323 ~~~~gpli~~~~~~~v~~~i~~a~~~Ga~v~~gg~~-~g~~~~Ptvl~~v~~~~~i~~eE~FGPvl~v~~~~~~~eAi~~ 401 (485)
T 4dng_A 323 KTVVGPLINERQIEKALEIIEQAKTDGIELAVEGKR-VGNVLTPYVFVGADNNSKIAQTELFAPIATIIKAGSDQEAIDM 401 (485)
T ss_dssp TCSBCCCSSHHHHHHHHHHHHHHHHTTCEEEECCCE-ETTEECCEEEESCCTTSHHHHCCCCSSEEEEEEESSHHHHHHH
T ss_pred CCccCCCCCHHHHHHHHHHHHHHHHCCCEEEeCCCC-CCcEECCEEEecCCCCChhhcCccccceEEEEEeCCHHHHHHH
Confidence 11 13322 2333 5 2 36899999999999999999999999999
Q ss_pred HHhcCCCceeEEEecCHHHHHHHHhcCCeeeEEEcCCCCC-CCCCccCCccccccccCcccccccchhhcccEEEEEEec
Q 005041 617 IHQHGSAHTDCIVAEDQKVAETFLCQVDSAAVFHNASTRF-CDGARFGLGAEVGISTSRIHARGPVGVEGLLTTRWILRG 695 (717)
Q Consensus 617 aN~~~~GL~a~I~t~d~~~a~~~~~~l~~G~v~iN~~~~~-~~~~pfG~g~~~G~~~~~~~~~g~~g~~~ft~~k~v~~~ 695 (717)
+|+++|||++||||+|.++++++++++++|+|+||+++.. .+.+||||.+.||+| +++|++|+++||+.|+|+++
T Consensus 402 an~~~~gL~a~v~t~d~~~a~~~~~~l~~G~v~vN~~~~~~~~~~pfGG~~~SG~G----~~~g~~~l~~~t~~k~v~~~ 477 (485)
T 4dng_A 402 ANDTEYGLSSAVFTSDLEKGEKFALQIDSGMTHVNDQSVNDSPNIAFGGNKASGVG----RFGNPWVVEEFTVTKWISIQ 477 (485)
T ss_dssp HHCSSCCSEEEEECSCHHHHHHHHTTSCSSEEEESCC--------------------------CHHHHHHHEEEEEEEEE
T ss_pred HhCCCCCceEEEECCCHHHHHHHHHhcCcceEEECCCCCCCCCCCCcCCcCCCCCC----ccchHHHHHHhhceEEEEEe
Confidence 9999999999999999999999999999999999998754 678899999999886 34699999999999999886
Q ss_pred Cc
Q 005041 696 NG 697 (717)
Q Consensus 696 ~~ 697 (717)
..
T Consensus 478 ~~ 479 (485)
T 4dng_A 478 KQ 479 (485)
T ss_dssp C-
T ss_pred cC
Confidence 53
No 41
>3r64_A NAD dependent benzaldehyde dehydrogenase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.57A {Corynebacterium glutamicum}
Probab=100.00 E-value=7.2e-77 Score=672.72 Aligned_cols=401 Identities=17% Similarity=0.173 Sum_probs=332.5
Q ss_pred HHHhcCCcceEEEecCCcccccHhhHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHhh
Q 005041 270 IKVLEGKRVGTLFHRDAHLWVKQVGAREMAVAARESSRRLQALQSQDRRKILLDVADALEANESLIKVENEADVAAAQEA 349 (717)
Q Consensus 270 ~~~~tg~~iGT~i~a~~~~~~~~~~v~~av~~A~~A~~~w~~~~~~~R~~~L~~~a~~l~~~~~el~~~~~~d~~~~~~~ 349 (717)
.+|.+|+.++++..++ .+|+++++++|++||+.|++++.++|.++|++++++|++|+++|++++++|++++.
T Consensus 33 ~~P~tg~~~~~~~~~~------~~~v~~av~~A~~A~~~w~~~~~~~R~~~L~~~a~~l~~~~~ela~~~~~e~Gk~~-- 104 (508)
T 3r64_A 33 INPYDDSVIAESKQAS------IADVDAAYEAAKKAQAEWAATPAAERSAIIYRAAELLEEHREEIVEWLIKESGSTR-- 104 (508)
T ss_dssp ECTTTCCEEEEEECCC------HHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTHHHHHHHHHHTSCCCH--
T ss_pred ECCCCCCEEEEECCCC------HHHHHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHcCCCH--
Confidence 4578899999998888 89999999999999999999999999999999999999999999999887765542
Q ss_pred chhHHHHHHhhcChhHHHHHHHHHHHHhcccccccccccccccCCCceEEEeecceeEEEEEcCC-Cch-hHHHHHHHHH
Q 005041 350 GYAKSLVSRLALKPGKISSLAKSIRILADMEEPIGQILKRTELADGLILEKTSCPLGVLLIVFES-RPD-ALVQIASLAI 427 (717)
Q Consensus 350 g~~~a~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~PlGVV~~I~p~-~P~-~~~~~~~~AL 427 (717)
.++ ..|+..+++.+++++...+......+.. ...+...+++++|+|||++|+|| ||. +.++++++||
T Consensus 105 --~~a--------~~Ev~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~~~~~P~GVv~~I~PwN~P~~~~~~~~~~AL 173 (508)
T 3r64_A 105 --SKA--------NLEITLAGNITKESASFPGRVHGRISPS-NTPGKENRVYRVAKGVVGVISPWNFPLNLSIRSVAPAL 173 (508)
T ss_dssp --HHH--------HHHHHHHHHHHHHHTTSTTTCCEEEECC-SSTTEEEEEEEEECSEEEEECCSSSHHHHHHHHHHHHH
T ss_pred --HHH--------HHHHHHHHHHHHHHHHHhhhhcCccccc-CCCCceeEEEEecceEEEEECCCcchHHHHHHHHHHHH
Confidence 122 2378888999999987665432232211 12346678899999999999998 685 6779999999
Q ss_pred HhCCEEEEeCCcchHHHH-HHHHHHHHHhcccc-cCcCceEEecC-CChhhhhhcCCCCccEEEeecCHHHHHHHHhhc-
Q 005041 428 RSGNGLLLKGGKEAMRSN-AILHKVITSAIPDT-VGEKLIGLVTS-REEIPDLLKLDDVIDLVIPRGSNKLVSQIKEST- 503 (717)
Q Consensus 428 aaGN~vVlKps~~tp~t~-~~l~~~~~~al~~a-lP~gvv~vv~~-~~~~~~~l~~~~~v~~v~fTGs~~~g~~i~~~a- 503 (717)
++||+||+|||+.||+|+ .++++++.+ + ||+|++|+|+| +.++++.|..||+||+|+||||+++||.|++.+
T Consensus 174 aaGN~VVlKps~~tp~t~~~~l~~ll~~----aGlP~gvv~vv~g~~~~~g~~L~~~p~vd~I~fTGS~~~g~~i~~~aa 249 (508)
T 3r64_A 174 AVGNAVVIKPASDTPVTGGVIPARIFEE----AGVPAGVISTVAGAGSEIGDHFVTHAVPKLISFTGSTPVGRRVGELAI 249 (508)
T ss_dssp HTTCEEEEECCTTCHHHHTHHHHHHHHT----TTCCTTTEEECCCCTTTTHHHHHHCSSCSEEEEESCHHHHHHHHHHHH
T ss_pred hcCCEEEEECCCCChHHHHHHHHHHHHH----hCcCcCeEEEEeCCCHHHHHHHhhCCCccEEEEECCHHHHHHHHHHhh
Confidence 999999999999999999 999999986 8 99999999996 467788888899999999999999999998866
Q ss_pred ----CCCEEEecCCcceEEEcCCCCHHHHHHHHHhhccCCCc-cccccceEEEcCcccChhhHHHHHHHHHHcCc-----
Q 005041 504 ----KIPVLGHADGICHVYVDKSANLDVAKNIVIDAKIDYPA-ACNAMETLLVHKDLACNGALNELVVELQHEGV----- 573 (717)
Q Consensus 504 ----~~p~~lElGGk~p~iV~~dADl~~A~~~i~~~~~~n~g-~C~a~~rv~V~~~i~d~~f~~~l~~~~~~~~~----- 573 (717)
.||+++|||||||+||++|||+|.|++.+++++|.|+| +|+|++|||||+++| |+|+++|+++++++.+
T Consensus 250 ~~~~l~~v~lElGGk~p~iV~~dADl~~Aa~~i~~~~~~n~GQ~C~a~~rvlV~~~i~-d~f~~~l~~~~~~~~~G~p~~ 328 (508)
T 3r64_A 250 NGGPMKTVALELGGNAPFVVLADADIDAAAQAAAVGAFLHQGQICMSINRVIVDAAVH-DEFLEKFVEAVKNIPTGDPSA 328 (508)
T ss_dssp SSSSCCEEEEECCCCCEEEECTTSCHHHHHHHHHHHHHTSTTCTTTCCSEEEEEHHHH-HHHHHHHHHHHHTCCBSCTTS
T ss_pred cccCCCceEeecCCcCceEECCCCCHHHHHHHHHHHHHhcCCCCcccCcEEEEehhHH-HHHHHHHHHHHHhccCCCCcc
Confidence 48999999999999999999999999999999999987 999999999999999 8999999999987521
Q ss_pred -----------------------------eE-ecCcccccc-c-c-C-----CCCccccccccCceEEEEEeCCHHHHHH
Q 005041 574 -----------------------------GL-FGGPRASKL-L-Q-I-----PETRLFHHEYNSMVCTVEIVDDVRAAID 615 (717)
Q Consensus 574 -----------------------------~~-~g~~~~~~~-~-p-i-----~~~~~~~eE~FGPVl~v~~~~~~deAi~ 615 (717)
++ .|+.. .++ + | | ++|++++||+||||++|++|+|+||||+
T Consensus 329 ~~~~~gpli~~~~~~~v~~~i~~a~~~Ga~v~~gG~~-~g~~~~Ptvl~~v~~~~~i~~eEiFGPVl~v~~~~~~deAi~ 407 (508)
T 3r64_A 329 EGTLVGPVINDSQLSGLKEKIELAKKEGATVQVEGPI-EGRLVHPHVFSDVTSDMEIAREEIFGPLISVLKADDEAHAAE 407 (508)
T ss_dssp SSCCBCCCSCHHHHHHHHHHHHHHHTTTCEEEECCCE-ETTEECCEEEEEECTTSGGGTSCCCSSEEEEEEESSHHHHHH
T ss_pred CCCcccCCCCHHHHHHHHHHHHHHHHcCCEEEecCCC-CCcEEecEEEecCCCCChhhcccccCceEEEEEeCCHHHHHH
Confidence 12 23322 233 3 5 3 4689999999999999999999999999
Q ss_pred HHHhcCCCceeEEEecCHHHHHHHHhcCCeeeEEEcCCCCC-CCCCccCCccccccccCcccccccchhhcccEEEEEEe
Q 005041 616 HIHQHGSAHTDCIVAEDQKVAETFLCQVDSAAVFHNASTRF-CDGARFGLGAEVGISTSRIHARGPVGVEGLLTTRWILR 694 (717)
Q Consensus 616 ~aN~~~~GL~a~I~t~d~~~a~~~~~~l~~G~v~iN~~~~~-~~~~pfG~g~~~G~~~~~~~~~g~~g~~~ft~~k~v~~ 694 (717)
++|+++|||++||||+|.++++++++++++|+|+||+++.. .+.+||||.+.||+| +++|++|+++||+.|+|++
T Consensus 408 ~aN~~~~gL~a~v~t~d~~~a~~~~~~l~aG~V~vN~~~~~~~~~~PfGG~~~SG~G----r~~G~~~l~~ft~~k~v~~ 483 (508)
T 3r64_A 408 LANASDFGLSAAVWSKDIDRAAQFALQIDSGMVHINDLTVNDEPHVMFGGSKNSGLG----RFNGDWAIEEFTTDRWIGI 483 (508)
T ss_dssp HHTSSSCCSCEEEECSCHHHHHHHHTTSCSSEEEECC------------------------CCCHHHHHHHTEEEEEEEE
T ss_pred HHhCCCCCcEEEEEcCCHHHHHHHHHhCCcceEEEcCCCCCCCCCCCcCCcCCCCCC----cCccHHHHHHhhceEEEEE
Confidence 99999999999999999999999999999999999998754 577899999999886 3469999999999999998
Q ss_pred cCcee
Q 005041 695 GNGHV 699 (717)
Q Consensus 695 ~~~~~ 699 (717)
+.+..
T Consensus 484 ~~~~~ 488 (508)
T 3r64_A 484 KRSAE 488 (508)
T ss_dssp ECCST
T ss_pred ecccc
Confidence 76543
No 42
>1t90_A MMSDH, probable methylmalonate-semialdehyde dehydrogenase; oxidoreductase, NAD; HET: NAD; 2.50A {Bacillus subtilis}
Probab=100.00 E-value=2.6e-76 Score=665.22 Aligned_cols=399 Identities=15% Similarity=0.143 Sum_probs=343.3
Q ss_pred HHHhcCCcceEEEecCCcccccHhhHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHhh
Q 005041 270 IKVLEGKRVGTLFHRDAHLWVKQVGAREMAVAARESSRRLQALQSQDRRKILLDVADALEANESLIKVENEADVAAAQEA 349 (717)
Q Consensus 270 ~~~~tg~~iGT~i~a~~~~~~~~~~v~~av~~A~~A~~~w~~~~~~~R~~~L~~~a~~l~~~~~el~~~~~~d~~~~~~~ 349 (717)
.+|.+++.++++..++ .+|+++++++|++||+.|+++|.++|.++|++++++|++|+++|++++++|++++..
T Consensus 26 ~~P~t~~~~~~~~~~~------~~~v~~av~~A~~A~~~w~~~~~~~R~~~L~~~a~~l~~~~~ela~~~~~e~Gk~~~- 98 (486)
T 1t90_A 26 VNPATKEVLCQVPIST------KEDIDYAAQTAAEAFKTWSKVAVPRRARILFNFQQLLSQHKEELAHLITIENGKNTK- 98 (486)
T ss_dssp ECTTTCCEEEEEECCC------HHHHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHCCCHH-
T ss_pred ECCCCCCEEEEEeCCC------HHHHHHHHHHHHHHHHHhhhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHH-
Confidence 5678999999998888 899999999999999999999999999999999999999999999999888765431
Q ss_pred chhHHHHHHhhcChhHHHHHHHHHHHHhccccc-ccccccccccCCCceEEEeecceeEEEEEcCC-Cch-hHHHHHHHH
Q 005041 350 GYAKSLVSRLALKPGKISSLAKSIRILADMEEP-IGQILKRTELADGLILEKTSCPLGVLLIVFES-RPD-ALVQIASLA 426 (717)
Q Consensus 350 g~~~a~~~~~~~~~~~i~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~PlGVV~~I~p~-~P~-~~~~~~~~A 426 (717)
++ ..|+..+++.+++++...+. .++..+.. ..+...+++|+|+|||++|+|| ||. +.+++++||
T Consensus 99 ---~a--------~~ev~~~~~~~~~~a~~~~~~~g~~~~~~--~~~~~~~~~~~P~GVV~~I~PwN~P~~~~~~~~~~A 165 (486)
T 1t90_A 99 ---EA--------LGEVGRGIENVEFAAGAPSLMMGDSLASI--ATDVEAANYRYPIGVVGGIAPFNFPMMVPCWMFPMA 165 (486)
T ss_dssp ---HH--------HHHHHHHHHHHHHHTTHHHHHCEEEEEEE--ETTEEEEEEEEECSEEEEECCSSCTTHHHHHHHHHH
T ss_pred ---HH--------HHHHHHHHHHHHHHHHHHHHhcCcccccC--CCCceeEEEecccCEEEEECCCchhHHHHHHHHHHH
Confidence 22 23677788888887754432 23322211 1345668899999999999998 685 677999999
Q ss_pred HHhCCEEEEeCCcchHHHHHHHHHHHHHhcccc-cCcCceEEecCCChhhhhhcCCCCccEEEeecCHHHHHHHHhhc--
Q 005041 427 IRSGNGLLLKGGKEAMRSNAILHKVITSAIPDT-VGEKLIGLVTSREEIPDLLKLDDVIDLVIPRGSNKLVSQIKEST-- 503 (717)
Q Consensus 427 LaaGN~vVlKps~~tp~t~~~l~~~~~~al~~a-lP~gvv~vv~~~~~~~~~l~~~~~v~~v~fTGs~~~g~~i~~~a-- 503 (717)
|++||+||+|||+.||+|+.++++++++ + ||+|++|+|+|+.++++.|..||+||+|+||||+++|+.|++.+
T Consensus 166 LaaGN~VVlKps~~tp~t~~~l~~l~~~----aGlP~gvv~vv~g~~~~~~~L~~~~~v~~I~fTGS~~~g~~i~~~aa~ 241 (486)
T 1t90_A 166 IALGNTFILKPSERTPLLTEKLVELFEK----AGLPKGVFNVVYGAHDVVNGILEHPEIKAISFVGSKPVGEYVYKKGSE 241 (486)
T ss_dssp HHTTCEEEEECCSSSCHHHHHHHHHHHH----TTCCTTSEEECCCSHHHHHHHHHCTTEEEEEEESCHHHHHHHHHHHHH
T ss_pred HHcCCEEEEECCCCChHHHHHHHHHHHH----hCCCCCEEEEEECCHHHHHHHHhCCCCCEEEEeCCHHHHHHHHHHHhc
Confidence 9999999999999999999999999987 7 99999999997556778788899999999999999999999877
Q ss_pred -CCCEEEecCCcceEEEcCCCCHHHHHHHHHhhccCCCc-cccccce-EEEcCcccChhhHHHHHHHHHHcCc-------
Q 005041 504 -KIPVLGHADGICHVYVDKSANLDVAKNIVIDAKIDYPA-ACNAMET-LLVHKDLACNGALNELVVELQHEGV------- 573 (717)
Q Consensus 504 -~~p~~lElGGk~p~iV~~dADl~~A~~~i~~~~~~n~g-~C~a~~r-v~V~~~i~d~~f~~~l~~~~~~~~~------- 573 (717)
.||+++|||||||+||++|||+|.|++.+++++|.|+| +|+|++| +|||++ | |+|+++|+++++++.+
T Consensus 242 ~~~pv~lElGGk~p~iV~~dADl~~Aa~~i~~~~~~n~GQ~C~a~~rvv~v~~~-~-d~f~~~l~~~~~~~~vG~~~~~~ 319 (486)
T 1t90_A 242 NLKRVQSLTGAKNHTIVLNDANLEDTVTNIVGAAFGSAGERCMACAVVTVEEGI-A-DEFMAKLQEKVADIKIGNGLDDG 319 (486)
T ss_dssp TTCEEEEECCCCEEEEECTTSCHHHHHHHHHHHHHGGGGCCTTCEEEEEEEHHH-H-HHHHHHHHHHHTTCCBSCTTSTT
T ss_pred cCCcEEeccCCCCcEEECCCCCHHHHHHHHHHHHHhCCCCCcccCCeeEEecCC-H-HHHHHHHHHHHHhcccCCCCccC
Confidence 59999999999999999999999999999999999987 9999999 999999 9 8999999998876531
Q ss_pred ---------------------------eE-ecCcc---ccccc--c-C-----CCCccccccccCceEEEEEeCCHHHHH
Q 005041 574 ---------------------------GL-FGGPR---ASKLL--Q-I-----PETRLFHHEYNSMVCTVEIVDDVRAAI 614 (717)
Q Consensus 574 ---------------------------~~-~g~~~---~~~~~--p-i-----~~~~~~~eE~FGPVl~v~~~~~~deAi 614 (717)
++ .|+.. ..++| | | ++|++++||+||||++|++|+|+||||
T Consensus 320 ~~~gpli~~~~~~~v~~~i~~a~~~Ga~~~~gg~~~~~~~g~~~~Ptvl~~v~~~~~~~~eEiFGPvl~v~~~~~~~eai 399 (486)
T 1t90_A 320 VFLGPVIREDNKKRTLSYIEKGLEEGARLVCDGRENVSDDGYFVGPTIFDNVTTEMTIWKDEIFAPVLSVIRVKNLKEAI 399 (486)
T ss_dssp CCBCCCSCHHHHHHHHHHHHHHHHHTCEEEECSSSSCCSSSSCCCCEEEESCCTTSHHHHSCCCSSEEEEEEESSHHHHH
T ss_pred CccCCCCCHHHHHHHHHHHHHHHhCCCEEEeCCccCCCCCCCEECCEEEeCCCCCCHhhcCcccCceEEEEEeCCHHHHH
Confidence 22 24432 12333 5 2 358899999999999999999999999
Q ss_pred HHHHhcCCCceeEEEecCHHHHHHHHhcCCeeeEEEcCCCCC-CCCCccCCccccccccCcccccccchhhcccEEEEEE
Q 005041 615 DHIHQHGSAHTDCIVAEDQKVAETFLCQVDSAAVFHNASTRF-CDGARFGLGAEVGISTSRIHARGPVGVEGLLTTRWIL 693 (717)
Q Consensus 615 ~~aN~~~~GL~a~I~t~d~~~a~~~~~~l~~G~v~iN~~~~~-~~~~pfG~g~~~G~~~~~~~~~g~~g~~~ft~~k~v~ 693 (717)
+++|+++|||++||||+|.++++++++++++|+|+||++... .+.+||||.++||+|. ++++|++|+++||+.|+|.
T Consensus 400 ~~aN~~~~gL~a~v~t~d~~~a~~~~~~l~aG~v~vN~~~~~~~~~~PfGG~k~SG~G~--~~~~g~~g~~~~~~~k~v~ 477 (486)
T 1t90_A 400 EIANKSEFANGACLFTSNSNAIRYFRENIDAGMLGINLGVPAPMAFFPFSGWKSSFFGT--LHANGKDSVDFYTRKKVVT 477 (486)
T ss_dssp HHHHHSSEESEEEEECCBHHHHHHHHHHCCCSEEEESCSCCCCCTTSCCCCEETTEESS--SCSSHHHHHHHTEEEEEEE
T ss_pred HHHhCCCCCeEEEEEcCCHHHHHHHHHhCCcCeEEECCCCCCCCCCCCcCCCCcCCCCC--CccchHHHHHHhhceEEEE
Confidence 999999999999999999999999999999999999986543 3578999999999862 3467999999999999998
Q ss_pred ecC
Q 005041 694 RGN 696 (717)
Q Consensus 694 ~~~ 696 (717)
++.
T Consensus 478 ~~~ 480 (486)
T 1t90_A 478 ARY 480 (486)
T ss_dssp EEC
T ss_pred Eec
Confidence 753
No 43
>3ty7_A Putative aldehyde dehydrogenase SAV2122; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; HET: MSE; 2.40A {Staphylococcus aureus}
Probab=100.00 E-value=5e-76 Score=662.54 Aligned_cols=391 Identities=16% Similarity=0.168 Sum_probs=318.0
Q ss_pred HHHhcCCcceEEEecCCcccccHhhHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHhh
Q 005041 270 IKVLEGKRVGTLFHRDAHLWVKQVGAREMAVAARESSRRLQALQSQDRRKILLDVADALEANESLIKVENEADVAAAQEA 349 (717)
Q Consensus 270 ~~~~tg~~iGT~i~a~~~~~~~~~~v~~av~~A~~A~~~w~~~~~~~R~~~L~~~a~~l~~~~~el~~~~~~d~~~~~~~ 349 (717)
.+|.+|+.++++..++ .+|+++++++|++||+.|+++|.++|.++|++++++|++|+++|++++++|++++..
T Consensus 28 ~~P~tg~~i~~~~~~~------~~~v~~av~~A~~A~~~w~~~~~~~R~~~L~~~a~~l~~~~~~la~~~~~e~Gk~~~- 100 (478)
T 3ty7_A 28 INPATEEVIGKVAKGN------KADVDKAVEAADDVYLEFRHTSVKERQALLDKIVKEYENRKDDIVQAITDELGAPLS- 100 (478)
T ss_dssp ECTTTCCEEEEEECCC------HHHHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHCCCHH-
T ss_pred ECCCCCCEEEEECCCC------HHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhCCCHH-
Confidence 4678999999998888 899999999999999999999999999999999999999999999999888765432
Q ss_pred chhHHHHHHhhcChhHHHHHHHHHHHHhcccccc-cccccccccCCCceEEEeecceeEEEEEcCC-Cch-hHHHHHHHH
Q 005041 350 GYAKSLVSRLALKPGKISSLAKSIRILADMEEPI-GQILKRTELADGLILEKTSCPLGVLLIVFES-RPD-ALVQIASLA 426 (717)
Q Consensus 350 g~~~a~~~~~~~~~~~i~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~PlGVV~~I~p~-~P~-~~~~~~~~A 426 (717)
++. ..|+...++.++++++..+.. +.. . +...+++++|+|||++|+|| ||. +.++++++|
T Consensus 101 ---ea~-------~~ev~~~~~~~~~~a~~~~~~~~~~-~------~~~~~~~~~P~GVv~~I~PwN~P~~~~~~~~~~A 163 (478)
T 3ty7_A 101 ---LSE-------RVHYQMGLNHFVAARDALDNYEFEE-R------RGDDLVVKEAIGVSGLITPWNFPTNQTSLKLAAA 163 (478)
T ss_dssp ---HHH-------HTHHHHHHHHHHHHHHHHHHCCSEE-E------ETTEEEEEEECCCEEEECCSSSTTHHHHHHHHHH
T ss_pred ---HHh-------HHHHHHHHHHHHHHHHHHHHhhccc-C------CccceEEecCceEEEEECCCcchHHHHHHHHHHH
Confidence 221 125566666677666443221 211 1 12357789999999999998 685 678999999
Q ss_pred HHhCCEEEEeCCcchHHHHHHHHHHHHHhcccc-cCcCceEEecC-CChhhhhhcCCCCccEEEeecCHHHHHHHHhhc-
Q 005041 427 IRSGNGLLLKGGKEAMRSNAILHKVITSAIPDT-VGEKLIGLVTS-REEIPDLLKLDDVIDLVIPRGSNKLVSQIKEST- 503 (717)
Q Consensus 427 LaaGN~vVlKps~~tp~t~~~l~~~~~~al~~a-lP~gvv~vv~~-~~~~~~~l~~~~~v~~v~fTGs~~~g~~i~~~a- 503 (717)
|++||+||+|||+.||+|+.++++++.+ + +|+|++|+|+| +.++++.|..||+||+|+||||+++|+.|++.+
T Consensus 164 LaaGN~VVlKps~~tp~t~~~l~~~~~~----aGlP~gvv~vv~g~~~~~~~~L~~~~~v~~v~fTGS~~~G~~i~~~aa 239 (478)
T 3ty7_A 164 FAAGSPVVLKPSEETPFAAVILAEIFDK----VGVPKGVFNLVNGDGAGVGNPLSEHPKVRMMSFTGSGPTGSKIMEKAA 239 (478)
T ss_dssp HHHTCCEEEECCTTSCHHHHHHHHHHHH----HTCCTTTEEECCCCTTTTHHHHHHCTTCCEEEECSCHHHHCC--CSTT
T ss_pred HHcCCeEEEECCCcchHHHHHHHHHHHH----hCcCcCeEEEEECCChHHHHHHHhCCCcCEEEEECcHHHHHHHHHHHH
Confidence 9999999999999999999999999987 7 99999999996 667888888999999999999999999999887
Q ss_pred --CCCEEEecCCcceEEEcCCCCHHHHHHHHHhhccCCCc-cccccceEEEcCcccChhhHHHHHHHHHHcC--------
Q 005041 504 --KIPVLGHADGICHVYVDKSANLDVAKNIVIDAKIDYPA-ACNAMETLLVHKDLACNGALNELVVELQHEG-------- 572 (717)
Q Consensus 504 --~~p~~lElGGk~p~iV~~dADl~~A~~~i~~~~~~n~g-~C~a~~rv~V~~~i~d~~f~~~l~~~~~~~~-------- 572 (717)
.+|+++|||||||+||++|||+|.|++.+++|+|.|+| +|+|++|+|||+++| |+|+++|+++++++.
T Consensus 240 ~~~~~v~lElGGk~p~iV~~dADl~~Aa~~i~~~~~~~~GQ~C~a~~rvlV~~~i~-d~f~~~l~~~~~~~~~g~p~~~~ 318 (478)
T 3ty7_A 240 KDFKKVSLELGGKSPYIVLDDVDIKEAAKATTGKVVNNTGQVCTAGTRVLVPNKIK-DAFLAELKEQFSQVRVGNPREDG 318 (478)
T ss_dssp TTTCEEECCCCCCCEEEECTTSCHHHHHHHHHHHHHGGGGCCTTCCCEEEEETTTH-HHHHHHHHHHHHTCCBSCTTSTT
T ss_pred hcCCceEEecCCCCCcccCCCCCHHHHHHHHHHHHHHhCCCCccCCCeEEEcHHHH-HHHHHHHHHHHHhccCCCCCCCC
Confidence 39999999999999999999999999999999999987 999999999999999 899999999988642
Q ss_pred --------------------------ceE-ecCc-c----ccccc--c-C-----CCCccccccccCceEEEEEeCCHHH
Q 005041 573 --------------------------VGL-FGGP-R----ASKLL--Q-I-----PETRLFHHEYNSMVCTVEIVDDVRA 612 (717)
Q Consensus 573 --------------------------~~~-~g~~-~----~~~~~--p-i-----~~~~~~~eE~FGPVl~v~~~~~~de 612 (717)
+++ .|+. . ..++| | | ++|++++||+||||++|++|+|+||
T Consensus 319 ~~~gpli~~~~~~~v~~~i~~a~~~Ga~~~~gg~~~~~~~~~g~~~~Ptvl~~v~~~~~~~~eE~FGPvl~v~~~~~~~e 398 (478)
T 3ty7_A 319 TQVGPIISKKQFDQVQNYINKGIEEGAELFYGGPGKPEGLEKGYFARPTIFINVDNQMTIAQEEIFGPVMSVITYNDLDE 398 (478)
T ss_dssp CCBCCCSCHHHHHHHHHHHHHHHHHTCEEEECCSSCCTTCCSSCCCCCEEEESCCTTSHHHHSCCCSSEEEEEEESSHHH
T ss_pred CccCCCcCHHHHHHHHHHHHHHHHCCCEEEecCccCccccCCCceeCCEEEecCCCCCcccCceeECceeEEEecCCHHH
Confidence 223 2441 1 12333 5 2 3689999999999999999999999
Q ss_pred HHHHHHhcCCCceeEEEecCHHHHHHHHhcCCeeeEEEcCCCCCCCCCccCCccccccccCcccccccchhhcccEEEEE
Q 005041 613 AIDHIHQHGSAHTDCIVAEDQKVAETFLCQVDSAAVFHNASTRFCDGARFGLGAEVGISTSRIHARGPVGVEGLLTTRWI 692 (717)
Q Consensus 613 Ai~~aN~~~~GL~a~I~t~d~~~a~~~~~~l~~G~v~iN~~~~~~~~~pfG~g~~~G~~~~~~~~~g~~g~~~ft~~k~v 692 (717)
||+++|+++|||++||||+|.++++++++++++|+|+||+ ....+..||||.+.||+| +++|++|+++||+.|+|
T Consensus 399 Ai~~an~~~~gL~a~v~t~d~~~a~~~~~~l~~G~v~vN~-~~~~~~~PfGG~k~SG~G----~~~G~~~l~~~t~~k~v 473 (478)
T 3ty7_A 399 AIQIANDTKYGLAGYVIGKDKETLHKVARSIEAGTVEINE-AGRKPDLPFGGYKQSGLG----REWGDYGIEEFLEVKSI 473 (478)
T ss_dssp HHHHHTCSSCCSEEEEECSCHHHHHHHHHHSCSSEEEETT-CC--------------------------CCGGGEEEEEE
T ss_pred HHHHHhCCCCCceEEEECCCHHHHHHHHHhCCcCeEEECC-CCCCCCCCcCCcCcCcCC----ccchHHHHHHhcCeEEE
Confidence 9999999999999999999999999999999999999999 555677899999999986 35699999999999998
Q ss_pred Ee
Q 005041 693 LR 694 (717)
Q Consensus 693 ~~ 694 (717)
+.
T Consensus 474 ~~ 475 (478)
T 3ty7_A 474 AG 475 (478)
T ss_dssp ET
T ss_pred EE
Confidence 74
No 44
>1ez0_A ALDH, aldehyde dehydrogenase; nucleotide binding domain, NADP+, oxidoreductase; HET: NAP; 2.10A {Vibrio harveyi} SCOP: c.82.1.1 PDB: 1eyy_A*
Probab=100.00 E-value=2e-75 Score=661.75 Aligned_cols=401 Identities=15% Similarity=0.149 Sum_probs=335.2
Q ss_pred HHHhcCCcc-eEEEecCCcccccHhhHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHh
Q 005041 270 IKVLEGKRV-GTLFHRDAHLWVKQVGAREMAVAARESSRRLQALQSQDRRKILLDVADALEANESLIKVENEADVAAAQE 348 (717)
Q Consensus 270 ~~~~tg~~i-GT~i~a~~~~~~~~~~v~~av~~A~~A~~~w~~~~~~~R~~~L~~~a~~l~~~~~el~~~~~~d~~~~~~ 348 (717)
.+|.+|+.+ +++..++ .+|+++++++|++||+.|+++|.++|.++|++++++|++|+++|++++++|++++..
T Consensus 12 ~nP~tg~~i~~~~~~~~------~~~v~~av~aA~~A~~~w~~~~~~~R~~~L~~~a~~l~~~~~ela~~~~~e~Gk~~~ 85 (510)
T 1ez0_A 12 TNAFTGEALPLAFPVHT------EVEVNQAATAAAKVARDFRRLNNSKRASLLRTIASELEARSDDIIARAHLETALPEV 85 (510)
T ss_dssp ECTTTSSEEEEEEECCC------HHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHCCCHH
T ss_pred ECCCCCCEEEEEECCCC------HHHHHHHHHHHHHHHHHHccCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhCCCHH
Confidence 347899999 6988888 899999999999999999999999999999999999999999999999988866542
Q ss_pred hchhHHHHHHhhcChhHHHHHHHHHHHHhccccc---ccccc----cccccCCC-ceEEEeecceeEEEEEcCC-Cchh-
Q 005041 349 AGYAKSLVSRLALKPGKISSLAKSIRILADMEEP---IGQIL----KRTELADG-LILEKTSCPLGVLLIVFES-RPDA- 418 (717)
Q Consensus 349 ~g~~~a~~~~~~~~~~~i~~~~~~~~~~~~~~~~---~~~~~----~~~~~~~~-~~~~~~~~PlGVV~~I~p~-~P~~- 418 (717)
++. .|+..+++.++++++..+. .+... +.. .+.+ ...+++|+|+|||++|+|| ||..
T Consensus 86 ----~a~--------~Ev~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~P~GVv~~I~PwN~P~~~ 152 (510)
T 1ez0_A 86 ----RLT--------GEIARTANQLRLFADVVNSGSYHQAILDTPNPTR-APLPKPDIRRQQIALGPVAVFGASNFPLAF 152 (510)
T ss_dssp ----HHH--------HHHHHHHHHHHHHHHHHHHTGGGCEEEECCBTTC-SSSCBCCEEEEEEECSCEEEECCSSCTTTT
T ss_pred ----HHH--------HHHHHHHHHHHHHHHHHHhCcccccccccccccc-CCCCCCCceEEEecCcEEEEECCccchhhh
Confidence 221 2344445555554432211 11111 100 0111 1357889999999999998 7854
Q ss_pred H--HHHHHHHHHhCCEEEEeCCcchHHHHHHHHHHHHHhcccc-cCcCceEEecC-CChhhhhhcCCCCccEEEeecCHH
Q 005041 419 L--VQIASLAIRSGNGLLLKGGKEAMRSNAILHKVITSAIPDT-VGEKLIGLVTS-REEIPDLLKLDDVIDLVIPRGSNK 494 (717)
Q Consensus 419 ~--~~~~~~ALaaGN~vVlKps~~tp~t~~~l~~~~~~al~~a-lP~gvv~vv~~-~~~~~~~l~~~~~v~~v~fTGs~~ 494 (717)
+ .++++|||++||+||+|||+.||+|+.++++++.+++.++ +|+|++|+|+| +.++++.|..||+||+|+||||++
T Consensus 153 ~~~~~~~~~ALaaGN~VVlKps~~tp~t~~~l~~l~~~al~~aGlP~gvv~vv~g~~~~~g~~L~~~p~v~~I~FTGS~~ 232 (510)
T 1ez0_A 153 SAAGGDTASALAAGCPVIVKGHTAHPGTSQIVAECIEQALKQEQLPQAIFTLLQGNQRALGQALVSHPEIKAVGFTGSVG 232 (510)
T ss_dssp STTSHHHHHHHHHTCCEEEECCTTCHHHHHHHHHHHHHHHHHHTCCGGGEEEECCSCTHHHHHHHHCTTCCEEEEESCHH
T ss_pred hhhHHHHHHHHHcCCEEEEECCCCchHHHHHHHHHHHHHHHHhCCCCCeEEEEeCCcHHHHHHHHcCCCCCEEEEeCcHH
Confidence 3 3999999999999999999999999999999999888888 99999999996 667888888899999999999999
Q ss_pred HHHHHHhhcC-----CCEEEecCCcceEEEcCCCCHH--HHHHHHHhhccCCCc-cccccceEEEcCc-ccChhhHHHHH
Q 005041 495 LVSQIKESTK-----IPVLGHADGICHVYVDKSANLD--VAKNIVIDAKIDYPA-ACNAMETLLVHKD-LACNGALNELV 565 (717)
Q Consensus 495 ~g~~i~~~a~-----~p~~lElGGk~p~iV~~dADl~--~A~~~i~~~~~~n~g-~C~a~~rv~V~~~-i~d~~f~~~l~ 565 (717)
+||.|++.+. ||+++|||||||+||++|||+| .|++.+++++|.|+| +|+|++|+|||++ +| |+|+++|+
T Consensus 233 ~G~~i~~~aa~~l~~~pv~lELGGk~p~iV~~dADl~~~~aa~~i~~~~~~n~GQ~C~a~~rvlV~~~~i~-d~f~~~l~ 311 (510)
T 1ez0_A 233 GGRALFNLAHERPEPIPFYGELGAINPTFIFPSAMRAKADLADQFVASMTMGCGQFCTKPGVVFALNTPET-QAFIETAQ 311 (510)
T ss_dssp HHHHHHHHHHHSSSCCCEEEECCCCCEEEECHHHHHHCTTHHHHHHHHHTGGGGCCTTCCCEEEEESSHHH-HHHHHHHH
T ss_pred HHHHHHHHhhccCCCccEEEECCCCCeEEEeCCCCccHHHHHHHHHHHHHcCCCCCcCCCCEEEEeCCccH-HHHHHHHH
Confidence 9999998773 9999999999999999999999 999999999999987 9999999999999 99 89999999
Q ss_pred HHHHHc-------------------------CceEe-cCccccccc--c-C-----CC---CccccccccCceEEEEEeC
Q 005041 566 VELQHE-------------------------GVGLF-GGPRASKLL--Q-I-----PE---TRLFHHEYNSMVCTVEIVD 608 (717)
Q Consensus 566 ~~~~~~-------------------------~~~~~-g~~~~~~~~--p-i-----~~---~~~~~eE~FGPVl~v~~~~ 608 (717)
++++++ |+++. |+. . ++| | | ++ |++++||+||||++|++|+
T Consensus 312 ~~~~~~~~gp~~~~~~~~~~~~~v~~~~~~~Ga~~~~gg~-~-g~~~~Ptvl~~~~~~~~~~~i~~eEiFGPVl~v~~~~ 389 (510)
T 1ez0_A 312 SLIRQQSPSTLLTPGIRDSYQSQVVSRGSDDGIDVTFSQA-E-SPCVASALFVTSSENWRKHPAWEEEIFGPQSLIVVCE 389 (510)
T ss_dssp HHHHHCCCBCCSSHHHHHHHHHHHHHHHTSTTEEEEECCC-C-TTSBCCEEEEEEHHHHHHCGGGGSCCCSSEEEEEEES
T ss_pred HHHHhcCCCCCCCHHHHHHHHHHHHHHHhcCCCEEEecCC-C-CCEecCEEEEecCCccccCHHHcCCccCCeEEEEEeC
Confidence 988764 23333 443 2 443 5 3 23 8999999999999999999
Q ss_pred CHHHHHHHHHhcCCCceeEEEecCH--HHHHHHHhcC--CeeeEEEcCCCC---CCCCCccCC-ccccccccCccccccc
Q 005041 609 DVRAAIDHIHQHGSAHTDCIVAEDQ--KVAETFLCQV--DSAAVFHNASTR---FCDGARFGL-GAEVGISTSRIHARGP 680 (717)
Q Consensus 609 ~~deAi~~aN~~~~GL~a~I~t~d~--~~a~~~~~~l--~~G~v~iN~~~~---~~~~~pfG~-g~~~G~~~~~~~~~g~ 680 (717)
|+||||+++|+++|||++||||+|. ++++++++++ ++|+|+||++.. ..+..|||| ++.||+|+. +++|+
T Consensus 390 ~~deai~~aN~~~~gLaa~v~t~d~~~~~a~~~~~~l~~~aG~V~iN~~~~~~~~~~~~pfGG~~~~sG~g~~--~~~G~ 467 (510)
T 1ez0_A 390 NVADMLSLSEMLAGSLTATIHATEEDYPQVSQLIPRLEEIAGRLVFNGWPTGVEVGYAMVHGGPYPASTHSAS--TSVGA 467 (510)
T ss_dssp SHHHHHHHHHTCCCEEEEEEECCGGGHHHHHHHHHHHHTTEEEEEESSCSSCCCCSSSCCCCCSTTSCSCSSC--CSSSG
T ss_pred CHHHHHHHHhcCCCCeEEEEEccCcCHHHHHHHHHHHhhcccEEEECCCCccCccCCCCCCCCCCCCcCCCCC--CCccH
Confidence 9999999999999999999999987 8999999999 899999998764 346789998 688888642 34699
Q ss_pred chhhcccEEEEEEe
Q 005041 681 VGVEGLLTTRWILR 694 (717)
Q Consensus 681 ~g~~~ft~~k~v~~ 694 (717)
+|+++|++.|++.-
T Consensus 468 ~gl~~~~~~k~~~~ 481 (510)
T 1ez0_A 468 EAIHRWLRPVAYQA 481 (510)
T ss_dssp GGGGGGEEEEEEES
T ss_pred HHHHHhheEEEEcC
Confidence 99999999987653
No 45
>3v4c_A Aldehyde dehydrogenase (NADP+); structural genomics, PSI-biology, nysgrc, NEW YORK structura genomics research consortium; HET: PE4; 1.91A {Sinorhizobium meliloti}
Probab=100.00 E-value=1.8e-75 Score=664.72 Aligned_cols=403 Identities=15% Similarity=0.103 Sum_probs=337.8
Q ss_pred HHHHhcCCcce-EEEecCCcccccHhhHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHH
Q 005041 269 IIKVLEGKRVG-TLFHRDAHLWVKQVGAREMAVAARESSRRLQALQSQDRRKILLDVADALEANESLIKVENEADVAAAQ 347 (717)
Q Consensus 269 l~~~~tg~~iG-T~i~a~~~~~~~~~~v~~av~~A~~A~~~w~~~~~~~R~~~L~~~a~~l~~~~~el~~~~~~d~~~~~ 347 (717)
+.+|.+|+.++ ++..++ .+|+++++++|++||+.|+++|.++|.++|++++++|++|+++|++++++|++++.
T Consensus 44 v~nP~tg~~i~~~~~~~~------~~dv~~av~~A~~A~~~w~~~~~~~R~~~L~~~a~~l~~~~~ela~~~~~e~Gk~~ 117 (528)
T 3v4c_A 44 TFASAPAHGPAHDFAVGT------VELVNRACEAAEEAFWTYGYSSRKERAAFLRAIADEIEARAEAITEIGSQETGLPE 117 (528)
T ss_dssp EEECCCSSSCCCEEECCC------HHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHCCCH
T ss_pred ccCCCCCCEeeeEeCCCC------HHHHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhCCCH
Confidence 56788999998 888888 89999999999999999999999999999999999999999999999988876543
Q ss_pred hhchhHHHHHHhhcChhHHHHHHHHHHHHhccccc---ccccc----cccccCCCceEEEeecceeEEEEEcCC-CchhH
Q 005041 348 EAGYAKSLVSRLALKPGKISSLAKSIRILADMEEP---IGQIL----KRTELADGLILEKTSCPLGVLLIVFES-RPDAL 419 (717)
Q Consensus 348 ~~g~~~a~~~~~~~~~~~i~~~~~~~~~~~~~~~~---~~~~~----~~~~~~~~~~~~~~~~PlGVV~~I~p~-~P~~~ 419 (717)
. ++. .|+...++.++++++..+. .+... +......+...+++|+|+|||++|+|| ||..+
T Consensus 118 ~----~a~--------~ev~~~~~~l~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~GVv~~I~PwN~P~~~ 185 (528)
T 3v4c_A 118 A----RLN--------GERGRTTGQLRLFADHIEKGDYLDRRVDAAMPERQPAPRQEIRLVQRPVGPVAVFGASNFPLAF 185 (528)
T ss_dssp H----HHH--------HHHHHHHHHHHHHHHHHHHCGGGCCEEECCBTTCSSSCBCCEEEEEEECSCEEEECCSSSTTTT
T ss_pred H----HHH--------HHHHHHHHHHHHHHHHHhhccccccccccccccccCCCCCcceeEeeCCcEEEEECCCcchHHH
Confidence 2 221 2455555555555533221 11111 100001233467899999999999998 68642
Q ss_pred ---HHHHHHHHHhCCEEEEeCCcchHHHHHHHHHHHHHhcccc-cCcCceEEecC-CChhhhhhcCCCCccEEEeecCHH
Q 005041 420 ---VQIASLAIRSGNGLLLKGGKEAMRSNAILHKVITSAIPDT-VGEKLIGLVTS-REEIPDLLKLDDVIDLVIPRGSNK 494 (717)
Q Consensus 420 ---~~~~~~ALaaGN~vVlKps~~tp~t~~~l~~~~~~al~~a-lP~gvv~vv~~-~~~~~~~l~~~~~v~~v~fTGs~~ 494 (717)
.++++|||++||+||+|||+.||+|+.++++++.+++.++ ||+|+||+|+| +.++++.|..||+||+|+||||++
T Consensus 186 ~~~~~~~a~ALaaGN~VVlKps~~tp~t~~~l~~l~~~~l~~aGlP~gvv~vv~g~~~~~g~~L~~~p~v~~V~fTGS~~ 265 (528)
T 3v4c_A 186 STAGGDTAAALAAGCPVVVKGHSAHPGTGEIVAEAVDAAIRKTGVHPGVFSLIQGGSRDVGHALVQHPHIKAVGFTGSLA 265 (528)
T ss_dssp STTSHHHHHHHHHTCCEEEECCTTCHHHHHHHHHHHHHHHHHHTCCGGGEEEECCCCHHHHHHHHHCTTCCEEEEESCHH
T ss_pred hhhhhhhHHHHhcCCEEEEECCCCCcHHHHHHHHHHHHHHHhcCCCcCeEEEEeCCCHHHHHHHHhCCCCCEEEEECChH
Confidence 3899999999999999999999999999999999988889 99999999996 557888888899999999999999
Q ss_pred HHHHHHhhc---C--CCEEEecCCcceEEEcCCC---CHHHHHHHHHhhccCCCc-cccccceEEEcCc-ccChhhHHHH
Q 005041 495 LVSQIKEST---K--IPVLGHADGICHVYVDKSA---NLDVAKNIVIDAKIDYPA-ACNAMETLLVHKD-LACNGALNEL 564 (717)
Q Consensus 495 ~g~~i~~~a---~--~p~~lElGGk~p~iV~~dA---Dl~~A~~~i~~~~~~n~g-~C~a~~rv~V~~~-i~d~~f~~~l 564 (717)
+||.|++.+ . ||+++|||||||+||++|| |+|.|++.+++++|.|+| +|+|++|+|||++ +| |+|+++|
T Consensus 266 ~G~~i~~~aa~~~~~~pv~lElGGk~p~iV~~dAd~~dl~~Aa~~i~~~~~~n~GQ~C~a~~rvlV~~~~i~-d~f~~~l 344 (528)
T 3v4c_A 266 GGRALFDLCAARPEPIPFFGELGSVNPMFLLPEALKARAETLGQGWAGSLTMGAGQFCTNPGIAVVIEGADA-DRFTTAA 344 (528)
T ss_dssp HHHHHHHHHHHSSSCCCEEEECCCCCCEEECHHHHHHHHHHHHHHHHHHHHGGGGCCTTCCCEEEEESSHHH-HHHHHHH
T ss_pred HHHHHHHHHhhccCCCceEEecCCCCeEEECCCCChhhHHHHHHHHHHHHHhcCCCccccCcEEEEecccHH-HHHHHHH
Confidence 999999877 3 8999999999999999999 889999999999999987 9999999999997 99 8999999
Q ss_pred HHHHHHc-------------------------CceEe-cCccccccc--c-C-----CC---CccccccccCceEEEEEe
Q 005041 565 VVELQHE-------------------------GVGLF-GGPRASKLL--Q-I-----PE---TRLFHHEYNSMVCTVEIV 607 (717)
Q Consensus 565 ~~~~~~~-------------------------~~~~~-g~~~~~~~~--p-i-----~~---~~~~~eE~FGPVl~v~~~ 607 (717)
+++++++ |+++. |+.. .++| | | ++ |++++||+||||++|++|
T Consensus 345 ~~~~~~~~~~~~~gp~~~~~~~~~v~~~~~~~Ga~v~~gG~~-~g~~~~PTvl~~~~~~~~~~~i~~eEiFGPVl~V~~~ 423 (528)
T 3v4c_A 345 VEALAKVAPQTMLTDGIAKAYRDGQARFATRNAVKPLLATES-SGRDASPNLFETTGAQFLADHALGEEVFGPLGLVVRV 423 (528)
T ss_dssp HHHHHTCCCEECSCHHHHHHHHHHHHHHHTCTTCEEEECCCC-CTTEECCEEEEEEHHHHHHCGGGGCCCSSSEEEEEEE
T ss_pred HHHHHhcccCCCCCHHHHHHHHHHHHHHHHhCCCEEEeCCCc-CCceeccEEEEecCcccccChhhcccccCCeEEEEec
Confidence 9988764 23333 4433 3433 5 3 23 799999999999999999
Q ss_pred CCHHHHHHHHHhcCCCceeEEEec--CHHHHHHHHhcCC--eeeEEEcCCCC---CCCCCccCC-ccccccccCcccccc
Q 005041 608 DDVRAAIDHIHQHGSAHTDCIVAE--DQKVAETFLCQVD--SAAVFHNASTR---FCDGARFGL-GAEVGISTSRIHARG 679 (717)
Q Consensus 608 ~~~deAi~~aN~~~~GL~a~I~t~--d~~~a~~~~~~l~--~G~v~iN~~~~---~~~~~pfG~-g~~~G~~~~~~~~~g 679 (717)
+|+||||+++|+++|||++||||+ |.+++++++++++ +|+|+||+++. ..+.+|||| .+.||+| +.+.+|
T Consensus 424 ~~~deAi~~aN~~~~GL~a~v~t~d~d~~~a~~~a~~l~~~aG~V~vN~~~~~~~~~~~~pfGG~~~~Sg~g--r~~~~G 501 (528)
T 3v4c_A 424 GSPAEMEELARGFQGQLTATIHMDAGDLETARRLRPVLERKAGRVLVNGFPTGVEVVDSMVHGGPYPASTNF--GATSVG 501 (528)
T ss_dssp SSHHHHHHHHHHCCCEEEEEEECCGGGHHHHHHHHHHHHHHEEEEEESSCTTCCCCSTTCCCCCTTTTBSCT--TCCSSS
T ss_pred CCHHHHHHHHhcCCCCceEEEEcCCCCHHHHHHHHHHHhhcCcEEEEcCCCCCCccCCCCCCCCCCCCCCCC--CCCCCc
Confidence 999999999999999999999999 8999999999998 99999999654 246789999 8888876 444569
Q ss_pred cchhhcccEEEEEE
Q 005041 680 PVGVEGLLTTRWIL 693 (717)
Q Consensus 680 ~~g~~~ft~~k~v~ 693 (717)
++|+++||+.|++.
T Consensus 502 ~~gl~~~~~~k~~q 515 (528)
T 3v4c_A 502 TMSIRRFLRPVAYQ 515 (528)
T ss_dssp GGGGGGGEEEEEEE
T ss_pred HHHHHHhchhHHhh
Confidence 99999999999743
No 46
>3ju8_A Succinylglutamic semialdehyde dehydrogenase; alpha-beta structure, structural genomics, PSI-2, protein ST initiative; HET: NAD; 1.82A {Pseudomonas aeruginosa}
Probab=100.00 E-value=6.8e-74 Score=646.21 Aligned_cols=393 Identities=16% Similarity=0.114 Sum_probs=333.0
Q ss_pred HHHhcCCcceEEEecCCcccccHhhHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHhh
Q 005041 270 IKVLEGKRVGTLFHRDAHLWVKQVGAREMAVAARESSRRLQALQSQDRRKILLDVADALEANESLIKVENEADVAAAQEA 349 (717)
Q Consensus 270 ~~~~tg~~iGT~i~a~~~~~~~~~~v~~av~~A~~A~~~w~~~~~~~R~~~L~~~a~~l~~~~~el~~~~~~d~~~~~~~ 349 (717)
.+|.+|+.++++..++ .+|+++++++|++||+.|++++.++|.++|++++++|++|+++|++++++|++++..
T Consensus 25 ~~P~tg~~~~~~~~~~------~~~v~~av~~A~~A~~~w~~~~~~~R~~~L~~~a~~l~~~~~ela~~~~~e~Gk~~~- 97 (490)
T 3ju8_A 25 LDPVGQGVVWSGRGAD------ATQVDAAVCAAREAFPAWARRPLEQRIELLERFAATLKSRADELARVIGEETGKPLW- 97 (490)
T ss_dssp ECTTTCCEEEEEECCC------HHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHCCCHH-
T ss_pred ECCCCCCEEEEECCCC------HHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHH-
Confidence 3678999999998888 899999999999999999999999999999999999999999999999888765432
Q ss_pred chhHHHHHHhhcChhHHHHHHHHHHHHhccccc-ccccccccccCCCceEEEeecceeEEEEEcCC-Cch-hHHHHHHHH
Q 005041 350 GYAKSLVSRLALKPGKISSLAKSIRILADMEEP-IGQILKRTELADGLILEKTSCPLGVLLIVFES-RPD-ALVQIASLA 426 (717)
Q Consensus 350 g~~~a~~~~~~~~~~~i~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~PlGVV~~I~p~-~P~-~~~~~~~~A 426 (717)
++ ..|+..+++.+++++...+. .+...+. ..+...+++++|+|||++|+|| ||. +.+++++||
T Consensus 98 ---ea--------~~ev~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~P~GVv~~I~PwN~P~~~~~~~~~~A 163 (490)
T 3ju8_A 98 ---ES--------ATEVTSMVNKVAISVQAFRERTGEKSGP---LADATAVLRHKPHGVVAVFGPYNFPGHLPNGHIVPA 163 (490)
T ss_dssp ---HH--------HHHHHHHHHHHHHHHHHHHHHSCCEEEE---ETTEEEEEEEEECSEEEEECCSSSTTHHHHHHHHHH
T ss_pred ---HH--------HHHHHHHHHHHHHHHHHHHHhcCCcccc---CCCCeeeEEECCCCEEEEECCCcchHHHHHHHHHHH
Confidence 22 12555666666665543321 2222211 1223456679999999999998 685 678999999
Q ss_pred HHhCCEEEEeCCcchHHHHHHHHHHHHHhcccc-cCcCceEEecCCChhhhhhcCCCCccEEEeecCHHHHHHHHhhcC-
Q 005041 427 IRSGNGLLLKGGKEAMRSNAILHKVITSAIPDT-VGEKLIGLVTSREEIPDLLKLDDVIDLVIPRGSNKLVSQIKESTK- 504 (717)
Q Consensus 427 LaaGN~vVlKps~~tp~t~~~l~~~~~~al~~a-lP~gvv~vv~~~~~~~~~l~~~~~v~~v~fTGs~~~g~~i~~~a~- 504 (717)
|++||+||+|||+.||+|+.++++++.+ + ||+|++|+|+|+.++++.|..||+||+|+||||+++||.|++.+.
T Consensus 164 LaaGN~VVlKps~~tp~t~~~l~~l~~~----aGlP~gvv~vv~g~~~~~~~L~~~~~v~~V~fTGS~~~g~~i~~~aa~ 239 (490)
T 3ju8_A 164 LLAGNCVVFKPSELTPKVAELTLKAWIQ----AGLPAGVLNLVQGGRETGVALAAHRGLDGLFFTGSSRTGNLLHSQFGG 239 (490)
T ss_dssp HHHTCEEEEECCTTCHHHHHHHHHHHHH----TTCCTTTEEECCCSHHHHHHHHTCTTCSEEEEESCHHHHHHHHHHTTT
T ss_pred HHcCCeEEEECCCCCcHHHHHHHHHHHH----hCcCcCeEEEEeCCHHHHHHHHhCCCcCEEEEECcHHHHHHHHHHhhc
Confidence 9999999999999999999999999987 7 999999999976677888889999999999999999999998873
Q ss_pred --CCE-EEecCCcceEEEcCCCCHHHHHHHHHhhccCCCc-cccccceEEEcCcc-cChhhHHHHHHHHHHcCc------
Q 005041 505 --IPV-LGHADGICHVYVDKSANLDVAKNIVIDAKIDYPA-ACNAMETLLVHKDL-ACNGALNELVVELQHEGV------ 573 (717)
Q Consensus 505 --~p~-~lElGGk~p~iV~~dADl~~A~~~i~~~~~~n~g-~C~a~~rv~V~~~i-~d~~f~~~l~~~~~~~~~------ 573 (717)
+|+ +||||||||+||++|||+|.|++.+++|+|.|+| +|+|++|+|||+++ | |+|+++|+++++++.+
T Consensus 240 ~~~~v~~lElGGk~p~iV~~dADl~~Aa~~i~~~~~~n~GQ~C~a~~rvlV~~~~i~-d~f~~~l~~~~~~~~~G~~~~~ 318 (490)
T 3ju8_A 240 QPQKILALEMGGNNPLVVEEVADLDAAVYTIIQSAFISAGQRCTCARRLLVPQGAWG-DALLARLVAVSATLRVGRFDEQ 318 (490)
T ss_dssp CTTSEEEEECCCCEEEEECCCSCHHHHHHHHHHHHHGGGGCSTTSEEEEEEESSHHH-HHHHHHHHHHHHHCCBCCTTCS
T ss_pred cCCCcEEeecCCCCeEEECCCCCHHHHHHHHHHHHHhcCCCCCcCCCEEEEECCccH-HHHHHHHHHHHHhccCCCCCCC
Confidence 898 7999999999999999999999999999999987 99999999999996 9 8999999999887632
Q ss_pred -----------------------------eE-ecCccc--ccc-c-c-C----CCCccccccccCceEEEEEeCCHHHHH
Q 005041 574 -----------------------------GL-FGGPRA--SKL-L-Q-I----PETRLFHHEYNSMVCTVEIVDDVRAAI 614 (717)
Q Consensus 574 -----------------------------~~-~g~~~~--~~~-~-p-i----~~~~~~~eE~FGPVl~v~~~~~~deAi 614 (717)
++ .|+... .++ + | | ++|++++||+||||++|++|+|+||||
T Consensus 319 ~~~~~Gpli~~~~~~~v~~~i~~a~~~Ga~~~~gg~~~~~~g~~~~PTvl~v~~~~~i~~eEiFGPVl~v~~~~~~~eAi 398 (490)
T 3ju8_A 319 PAPFMGAVISLSAAEHLLKAQEHLIGKGAQPLLAMTQPIDGAALLTPGILDVSAVAERPDEEFFGPLLQVIRYSDFAAAI 398 (490)
T ss_dssp SCCSBCCCSCHHHHHHHHHHHHHHHHTTCEEEECCCCCSTTSCCCCCEEEECTTCSSCCCCCCCSSEEEEEEESSHHHHH
T ss_pred CcCccccccCHHHHHHHHHHHHHHHHCCCEEEECCCccCCCCCEEccEEEEeCCCCccccccccccEEEEEEeCCHHHHH
Confidence 11 122211 122 2 5 2 468999999999999999999999999
Q ss_pred HHHHhcCCCceeEEEecCHHHHHHHHhcCCeeeEEEcCCCCC-CCCCccCCccccccccCcccccccchhhcccEEEEEE
Q 005041 615 DHIHQHGSAHTDCIVAEDQKVAETFLCQVDSAAVFHNASTRF-CDGARFGLGAEVGISTSRIHARGPVGVEGLLTTRWIL 693 (717)
Q Consensus 615 ~~aN~~~~GL~a~I~t~d~~~a~~~~~~l~~G~v~iN~~~~~-~~~~pfG~g~~~G~~~~~~~~~g~~g~~~ft~~k~v~ 693 (717)
+++|+++|||++||||+|.++++++++++++|+|+||+++.. .+..||||.+.||+ .++++||+.|+|+
T Consensus 399 ~~aN~~~~gL~a~v~t~d~~~a~~~~~~l~aG~v~vN~~~~~~~~~~PfGG~~~SG~----------~~~~~~~~~k~v~ 468 (490)
T 3ju8_A 399 REANATQYGLAAGLLSDSRERFEQFLVESRAGIVNWNKQLTGAASSAPFGGIGASGN----------HRPSAYYAADYCA 468 (490)
T ss_dssp HHHHCSSCCSEEEEECSCHHHHHHHHHHCCSSEEEESSCSSCCCTTSEECCCGGGBS----------SCCEETTHHHHHE
T ss_pred HHHhcCCCCceEEEEcCCHHHHHHHHHhcCcceEEECCCcCCCCCCCCcCCccccch----------hHHHhhheeEEEE
Confidence 999999999999999999999999999999999999997653 46789998877654 4789999999999
Q ss_pred ecCce
Q 005041 694 RGNGH 698 (717)
Q Consensus 694 ~~~~~ 698 (717)
++...
T Consensus 469 ~~~~~ 473 (490)
T 3ju8_A 469 YPVAS 473 (490)
T ss_dssp EEEEE
T ss_pred Eeccc
Confidence 87543
No 47
>4e3x_A Delta-1-pyrroline-5-carboxylate dehydrogenase, mitochondrial; amino acid metabolism, proline inhibition, oxidoreductase; HET: 16P PGE; 1.24A {Mus musculus} PDB: 3v9k_A* 3v9l_A* 3v9j_A* 3v9g_A 3v9h_A 3v9i_A
Probab=100.00 E-value=3.5e-73 Score=646.42 Aligned_cols=399 Identities=16% Similarity=0.177 Sum_probs=331.6
Q ss_pred HHHhc-CCcceEEEecCCcccccHhhHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHC-HHHHHHHHHHHHHHHH
Q 005041 270 IKVLE-GKRVGTLFHRDAHLWVKQVGAREMAVAARESSRRLQALQSQDRRKILLDVADALEAN-ESLIKVENEADVAAAQ 347 (717)
Q Consensus 270 ~~~~t-g~~iGT~i~a~~~~~~~~~~v~~av~~A~~A~~~w~~~~~~~R~~~L~~~a~~l~~~-~~el~~~~~~d~~~~~ 347 (717)
.+|.+ ++.++++..++ .+|+++|+++|++||+.|++++.++|+++|++++++|+++ +++|++++.+|++++.
T Consensus 82 ~~P~~~~~~i~~~~~a~------~~dv~~Av~aA~~A~~~W~~~~~~~R~~iL~~~a~~l~~~~~~el~~~~~~e~Gk~~ 155 (563)
T 4e3x_A 82 LSPFNHAHKVAKFCYAD------KALLNRAIDAALAARKEWDLKPMADRAQVFLKAADMLSGPRRAEVLAKTMVGQGKTV 155 (563)
T ss_dssp EETTEEEEEEEEEECCC------HHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHCCCH
T ss_pred eCCCCCCcEEEEEeCCC------HHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHcCCCH
Confidence 56776 67888888888 8999999999999999999999999999999999999999 9999999887765542
Q ss_pred hhchhHHHHHHhhcChhHHHHHHHHHHHHhcccccc-cccccccccCCCceEEEeecceeEEEEEcCC-Cch-hHHHHHH
Q 005041 348 EAGYAKSLVSRLALKPGKISSLAKSIRILADMEEPI-GQILKRTELADGLILEKTSCPLGVLLIVFES-RPD-ALVQIAS 424 (717)
Q Consensus 348 ~~g~~~a~~~~~~~~~~~i~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~PlGVV~~I~p~-~P~-~~~~~~~ 424 (717)
.++..+ ++...++.+++++...+.. +..... .+.+...+.++.|+|||++|+|| ||. +..++++
T Consensus 156 ----~ea~~e-------~v~~~~~~~~~~a~~~~~~~~~~~~~--~~~~~~~~~~r~p~GVV~~I~PwNfP~~~~~~~~a 222 (563)
T 4e3x_A 156 ----IQAEID-------AAAELIDFFRFNAKFAVELEGEQPIS--VPPSTNHTVYRGLEGFVAAISPFNFTAIGGNLAGA 222 (563)
T ss_dssp ----HHHHHH-------TTHHHHHHHHHHHHHHHHHTTCCCCC--CTTEEEEEECCBCSSEEEEECCSSCHHHHHHHHHH
T ss_pred ----HHHhHH-------HHHHHHHHHHHHHHHHHHhhCCCccC--CCCCcceEEEecCceEEEEECCchHHHHHHHHHHH
Confidence 222211 2445555666555433211 211110 11234456778889999999998 685 4568999
Q ss_pred HHHHhCCEEEEeCCcchHHHHHHHHHHHHHhcccc-cCcCceEEecC-CChhhhhhcCCCCccEEEeecCHHHHHHHHhh
Q 005041 425 LAIRSGNGLLLKGGKEAMRSNAILHKVITSAIPDT-VGEKLIGLVTS-REEIPDLLKLDDVIDLVIPRGSNKLVSQIKES 502 (717)
Q Consensus 425 ~ALaaGN~vVlKps~~tp~t~~~l~~~~~~al~~a-lP~gvv~vv~~-~~~~~~~l~~~~~v~~v~fTGs~~~g~~i~~~ 502 (717)
||| +||+||+|||+.||+|+.++++++.+ + ||+|+||+|+| +.++++.|..||+|++|+||||+++|+.|++.
T Consensus 223 pAL-aGNtVVlKPs~~tp~sa~~l~~ll~e----AGlP~Gvvnvv~g~g~~~g~~L~~hp~v~~I~FTGSt~vG~~i~~~ 297 (563)
T 4e3x_A 223 PAL-MGNVVLWKPSDTAMLASYAVYRILRE----AGLPPNIIQFVPADGPTFGDTVTSSEHLCGINFTGSVPTFKHLWRQ 297 (563)
T ss_dssp HHH-TTCCEEEECCGGGHHHHHHHHHHHHH----TTCCTTSEEECCCCHHHHHHHHTTCTTEEEEEEESCHHHHHHHHHH
T ss_pred Hhh-cCCEEEEECCCCChHHHHHHHHHHHH----hCCCCCeEEEEeCCcHHHHHHHHhCCCcCEEEEECCHHHHHHHHHH
Confidence 999 59999999999999999999999997 7 99999999996 56788899999999999999999999999887
Q ss_pred c---CC------CEEEecCCcceEEEcCCCCHHHHHHHHHhhccCCCc-cccccceEEEcCcccChhhHHHHHHHHHHcC
Q 005041 503 T---KI------PVLGHADGICHVYVDKSANLDVAKNIVIDAKIDYPA-ACNAMETLLVHKDLACNGALNELVVELQHEG 572 (717)
Q Consensus 503 a---~~------p~~lElGGk~p~iV~~dADl~~A~~~i~~~~~~n~g-~C~a~~rv~V~~~i~d~~f~~~l~~~~~~~~ 572 (717)
+ .| |+++|||||||+||++|||+|.|++.+++|+|.|+| .|+|++|+|||+++| |+|+++|+++++++.
T Consensus 298 aa~~lk~~~~~prv~lElGGk~p~IV~~dADld~Aa~~iv~~~f~~~GQ~C~A~~rv~V~~si~-d~f~~~l~~~~~~l~ 376 (563)
T 4e3x_A 298 VAQNLDRFRTFPRLAGECGGKNFHFVHSSADVDSVVSGTLRSAFEYGGQKCSACSRLYVPKSLW-PQIKGRLLEEHSRIK 376 (563)
T ss_dssp HHHTTTTCSSCCEEEEECCCCEEEEECTTSCHHHHHHHHHHHHHGGGGCSTTCEEEEEEEGGGH-HHHHHHHHHHHHTCC
T ss_pred HHhhCCccccCCceeccCCCCCceeeCCCCCHHHHHHHHHHHHHhcCCCCCcCCcEEEEecchH-HHHHHHHHHHHHhcc
Confidence 6 35 499999999999999999999999999999999987 999999999999999 899999999998753
Q ss_pred c------------------------------------eE-ecCccc--cccc--c-C-----CCCccccccccCceEEEE
Q 005041 573 V------------------------------------GL-FGGPRA--SKLL--Q-I-----PETRLFHHEYNSMVCTVE 605 (717)
Q Consensus 573 ~------------------------------------~~-~g~~~~--~~~~--p-i-----~~~~~~~eE~FGPVl~v~ 605 (717)
+ ++ .|+... .++| | | ++|++++||+||||++|+
T Consensus 377 vGdp~~d~~~~~Gpli~~~~~~rv~~~i~~a~~~~ga~v~~GG~~~~~~G~fv~PTvl~~v~~~~~i~~eEiFGPVl~V~ 456 (563)
T 4e3x_A 377 VGDPAEDFGTFFSAVIDAKAFARIKKWLEHARSSPSLSILAGGQCNESVGYYVEPCIIESKDPQEPIMKEEIFGPVLTVY 456 (563)
T ss_dssp BSCTTTCTTCSBCCCSCHHHHHHHHHHHHHHHHCTTEEEEECCCEECSSSCEECCEEEEESCTTCGGGTSCCCSSEEEEE
T ss_pred CCCcccCcCCccCCCcCHHHHHHHHHHHHHHhhcCCCEEEeCCccCCCCCcEecCEEEecCCCCChhhcCCCcCeEEEEE
Confidence 1 11 122211 2333 5 2 468999999999999999
Q ss_pred EeCC--HHHHHHHH-HhcCCCceeEEEecCHHHHHHHHhcCC--eeeEEEcCCCCC--CCCCccCCccccccccCccccc
Q 005041 606 IVDD--VRAAIDHI-HQHGSAHTDCIVAEDQKVAETFLCQVD--SAAVFHNASTRF--CDGARFGLGAEVGISTSRIHAR 678 (717)
Q Consensus 606 ~~~~--~deAi~~a-N~~~~GL~a~I~t~d~~~a~~~~~~l~--~G~v~iN~~~~~--~~~~pfG~g~~~G~~~~~~~~~ 678 (717)
+|+| +||||+++ |+++|||++||||+|.+++++++++++ +|+|+||+.++. .+.+||||.+.||++. +++
T Consensus 457 ~~~d~~~deAi~~ann~s~yGLta~V~t~d~~~~~~~~~~l~~~aG~v~IN~~~~~~~~~~~PFGG~k~SG~g~---~~~ 533 (563)
T 4e3x_A 457 VYPDDKYRETLKLVDSTTSYGLTGAVFAQDKAIVQEATRMLRNAAGNFYINDKSTGSVVGQQPFGGARASGTND---KPG 533 (563)
T ss_dssp EECGGGHHHHHHHHHHSSSEESEEEEECSCHHHHHHHHHHTTTTCSEEEESSCSCCCCTTTSCCCCEETTBCCC---CTT
T ss_pred EECCCCHHHHHHHHHcCCCCCCEEEEEeCCHHHHHHHHHhhhcCeeEEEEcCCCCCCCcCCCCCCCccccCCCC---ccC
Confidence 9996 79999999 799999999999999999999999965 999999997643 4678999999998862 457
Q ss_pred ccchhhcccEEEEEEecC
Q 005041 679 GPVGVEGLLTTRWILRGN 696 (717)
Q Consensus 679 g~~g~~~ft~~k~v~~~~ 696 (717)
|++++++|++.|+|..+.
T Consensus 534 G~~~l~~~~~~k~v~~~~ 551 (563)
T 4e3x_A 534 GPHYILRWTSPQVIKETH 551 (563)
T ss_dssp STTGGGGGBCCEEEEEEC
T ss_pred CHHHHHHhCceEEEEEeC
Confidence 999999999999998753
No 48
>4f9i_A Proline dehydrogenase/delta-1-pyrroline-5-carboxy dehydrogenase; proline utilization A, PUTA, flavoenzyme, structural genomic biology; HET: FAD MES; 2.20A {Geobacter sulfurreducens}
Probab=100.00 E-value=1.3e-72 Score=674.45 Aligned_cols=401 Identities=17% Similarity=0.179 Sum_probs=345.2
Q ss_pred HHHHhc-CCcceEEEecCCcccccHhhHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHH
Q 005041 269 IIKVLE-GKRVGTLFHRDAHLWVKQVGAREMAVAARESSRRLQALQSQDRRKILLDVADALEANESLIKVENEADVAAAQ 347 (717)
Q Consensus 269 l~~~~t-g~~iGT~i~a~~~~~~~~~~v~~av~~A~~A~~~w~~~~~~~R~~~L~~~a~~l~~~~~el~~~~~~d~~~~~ 347 (717)
+.+|.+ ++.+|++..++ .+++++|+++|++||+.|+++|.++|+++|++++++|++|+++|++++++|.||+.
T Consensus 549 v~nPa~~~~~i~~v~~a~------~~dv~~Av~aA~~A~~~W~~~~~~eRa~iL~~~Adll~~~~~eLa~~~~~E~GK~~ 622 (1026)
T 4f9i_A 549 TVNPNKPSEVLGQICQAG------TTEVGDAIAAAKAAFPAWRDTDPRTRAEYLLKAAQAARKRLFELSAWQVLEIGKQW 622 (1026)
T ss_dssp EEETTEEEEEEEEEECCC------HHHHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHTCCCH
T ss_pred EeCCCCCCceEEEEeCCC------HHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCh
Confidence 366776 77889988888 89999999999999999999999999999999999999999999999887765542
Q ss_pred hhchhHHHHHHhhcChhHHHHHHHHHHHHhcccccc-cccccccccCCCceEEEeecceeEEEEEcCC-Cch-hHHHHHH
Q 005041 348 EAGYAKSLVSRLALKPGKISSLAKSIRILADMEEPI-GQILKRTELADGLILEKTSCPLGVLLIVFES-RPD-ALVQIAS 424 (717)
Q Consensus 348 ~~g~~~a~~~~~~~~~~~i~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~PlGVV~~I~p~-~P~-~~~~~~~ 424 (717)
. ++ ..|+..+++.+++++...+.. +...+. ...+...+++++|+|||++|+|| ||. +.+++++
T Consensus 623 ~----ea--------~~Ev~~aid~lr~~a~~~~~~~~~~~~~--~~~g~~~~~~~~PlGVV~~I~PwNfPl~i~~~~~a 688 (1026)
T 4f9i_A 623 D----QA--------YADVTEAIDFLEYYAREMIRLGQPQRVG--HAPGELNHYFYEPKGVAAVIAPWNFPLAISMGMAS 688 (1026)
T ss_dssp H----HH--------HHHHHHHHHHHHHHHHHHHHHTSCEEEC--CCTTEEEEEEEEECSEEEEECCSSSTTHHHHHHHH
T ss_pred h----hH--------HHHHHHHHHHHHHHHHHHHHhcCCcccc--CCCCccceeEeecCceEEEeCCCccHHHHHHHHHH
Confidence 1 22 236778888888887655432 221111 12355677889999999999998 685 6779999
Q ss_pred HHHHhCCEEEEeCCcchHHHHHHHHHHHHHhcccc-cCcCceEEecC-CChhhhhhcCCCCccEEEeecCHHHHHHHHhh
Q 005041 425 LAIRSGNGLLLKGGKEAMRSNAILHKVITSAIPDT-VGEKLIGLVTS-REEIPDLLKLDDVIDLVIPRGSNKLVSQIKES 502 (717)
Q Consensus 425 ~ALaaGN~vVlKps~~tp~t~~~l~~~~~~al~~a-lP~gvv~vv~~-~~~~~~~l~~~~~v~~v~fTGs~~~g~~i~~~ 502 (717)
+||++||+||+|||+.||+|+..+++++++ + +|+|+||+|+| +.++++.|..||+|++|+||||+++|+.|++.
T Consensus 689 ~ALaaGNtVVlKPse~tplsa~~l~ell~e----AGlP~gvvnvV~G~g~~vg~~L~~hp~v~~V~FTGSt~vg~~I~~~ 764 (1026)
T 4f9i_A 689 AAIVTGNCVVFKPSGITSIIGWHLVELFRE----AGLPEGVFNFTPGRGSVMGDYLVDHPDISLIAFTGSMETGLRIIER 764 (1026)
T ss_dssp HHHHTTCEEEEECCGGGHHHHHHHHHHHHH----TTCCTTSEEECCCCHHHHHHHHHHCTTEEEEEEESCHHHHHHHHHH
T ss_pred HHHHcCCEEEEEcCccchHHHHHHHHHHHH----hCcCCCeEEEEecCcHHHHHHHHhCCCCCEEEeCCCHHHHHHHHHH
Confidence 999999999999999999999999999997 7 99999999996 66788888899999999999999999999887
Q ss_pred cC---------CCEEEecCCcceEEEcCCCCHHHHHHHHHhhccCCCc-cccccceEEEcCcccChhhHHHHHHHHHHcC
Q 005041 503 TK---------IPVLGHADGICHVYVDKSANLDVAKNIVIDAKIDYPA-ACNAMETLLVHKDLACNGALNELVVELQHEG 572 (717)
Q Consensus 503 a~---------~p~~lElGGk~p~iV~~dADl~~A~~~i~~~~~~n~g-~C~a~~rv~V~~~i~d~~f~~~l~~~~~~~~ 572 (717)
+. ||+++|||||||+||++|||+|.|++.+++|+|.|+| +|+|++|+|||+++| |+|+++|+++++++.
T Consensus 765 aa~~~~~~~~lkpv~lElGGknp~IV~~dADld~Aa~~iv~saf~~aGQ~C~A~~rl~V~~~i~-d~f~~~L~~~~~~l~ 843 (1026)
T 4f9i_A 765 AAKVHPGQANVKKIISEMGGKNAIIIDDDADLDEAVPHVLYSAFGFQGQKCSACSRVIVLDAVY-DKFIERLVSMAKATK 843 (1026)
T ss_dssp HTSCCTTCCSCCEEEEECCCCEEEEECTTCCHHHHHHHHHHHHHGGGGCSTTCEEEEEEEGGGH-HHHHHHHHHHHHHCC
T ss_pred hhcccccccCccceEEecCCCCeEEECCCCCHHHHHHHHHHHHHhCCCCCCCCCceEEecHHHH-HHHHHHHHHHHHhcc
Confidence 64 7999999999999999999999999999999999987 999999999999999 899999999998763
Q ss_pred c---------------------------------e-EecCccc--cccc--c-C-----CCCccccccccCceEEEEEeC
Q 005041 573 V---------------------------------G-LFGGPRA--SKLL--Q-I-----PETRLFHHEYNSMVCTVEIVD 608 (717)
Q Consensus 573 ~---------------------------------~-~~g~~~~--~~~~--p-i-----~~~~~~~eE~FGPVl~v~~~~ 608 (717)
+ + +.|+... .++| | | +++++++||+||||++|++|+
T Consensus 844 vG~p~d~~t~~Gpvi~~~~~~~v~~~i~~a~~~G~~v~gG~~~~~~G~fv~PTvl~~v~~~~~i~~eEiFGPVl~V~~~~ 923 (1026)
T 4f9i_A 844 VGPSEDPANYMGAVADDKAMKSIKEYAEIGKREGHVLYESPVPAGEGYFVPMTIIGGIKPEHRIAQEEIFGPVLAVMRAK 923 (1026)
T ss_dssp BCCTTSTTCSBCCCSSHHHHHHHHHHHHHHHHHSEEEEECCCCSSSSCCCCCEEEESCCTTSGGGTSCCCSSEEEEEEES
T ss_pred cCCcccccCccccccCHHHHHHHHHHHHHHHhCCeEEecCCcCCCCCceecceeeecCCCCccccCceecCcEEEEEEeC
Confidence 2 1 1233221 1333 5 2 468999999999999999999
Q ss_pred CHHHHHHHHHhcCCCceeEEEecCHHHHHHHHhcCCeeeEEEcCCCCC--CCCCccCCccccccccCcccccccchhhcc
Q 005041 609 DVRAAIDHIHQHGSAHTDCIVAEDQKVAETFLCQVDSAAVFHNASTRF--CDGARFGLGAEVGISTSRIHARGPVGVEGL 686 (717)
Q Consensus 609 ~~deAi~~aN~~~~GL~a~I~t~d~~~a~~~~~~l~~G~v~iN~~~~~--~~~~pfG~g~~~G~~~~~~~~~g~~g~~~f 686 (717)
|+||||+++|+++|||++||||+|.++++++++++++|+|+||+.++. .+..||||.+.||+|. +.+|++++++|
T Consensus 924 d~deAI~~aN~t~yGLt~~V~t~d~~~a~~~~~~l~aG~v~IN~~~~~~~~~~~PFGG~k~SG~G~---~~gG~~~l~~f 1000 (1026)
T 4f9i_A 924 DFDQAIEWANSTQFALTGGIFSRSPEHLAKARREFRVGNLYINRNNTGALVERQPFGGARMSGVGT---KAGGPDYLLHF 1000 (1026)
T ss_dssp SHHHHHHHHTCSSCCSEEEEECCCHHHHHHHHHHSCCSEEEESSCSCCCCTTTSCBCCCGGGBSSC---CBTSTTTGGGG
T ss_pred CHHHHHHHHHcCCCCCeEEEECCCHHHHHHHHHhCCEeeEEEcCCCCCCCCCCCCCCCcCcCCCCC---CcCCHHHHHHh
Confidence 999999999999999999999999999999999999999999997654 3678999999998852 34689999999
Q ss_pred cEEEEEEecCc
Q 005041 687 LTTRWILRGNG 697 (717)
Q Consensus 687 t~~k~v~~~~~ 697 (717)
++.|+|..+..
T Consensus 1001 ~~~k~v~~~~~ 1011 (1026)
T 4f9i_A 1001 MDPRVVTENTM 1011 (1026)
T ss_dssp EEEEEEEEECC
T ss_pred ceEEEEEEecc
Confidence 99999998764
No 49
>2y53_A Aldehyde dehydrogenase (BOX pathway); oxidoreductase, NADP, nucleotide-binding; HET: NAP; 1.40A {Burkholderia xenovorans LB400} PDB: 2y52_A 2y51_A 2vro_A* 2y5d_A*
Probab=100.00 E-value=2.4e-71 Score=631.76 Aligned_cols=395 Identities=15% Similarity=0.138 Sum_probs=324.3
Q ss_pred HHHhcCCcceEEEecCCcccccHhhHHHHHHHHHHH-HHHHhcCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHh
Q 005041 270 IKVLEGKRVGTLFHRDAHLWVKQVGAREMAVAARES-SRRLQALQSQDRRKILLDVADALEANESLIKVENEADVAAAQE 348 (717)
Q Consensus 270 ~~~~tg~~iGT~i~a~~~~~~~~~~v~~av~~A~~A-~~~w~~~~~~~R~~~L~~~a~~l~~~~~el~~~~~~d~~~~~~ 348 (717)
.+|.+|+.++++..++ +|+++|+++|++| |+.|+++|.++|.++|++++++|++|+++|++++++|++++..
T Consensus 27 ~nP~tg~~i~~~~~~~-------~dv~~Av~aA~~A~~~~w~~~~~~~R~~~L~~~a~~l~~~~~ela~~~~~e~Gk~~~ 99 (534)
T 2y53_A 27 TDPVTGVALVRVSSEG-------LDLARAFSFAREDGGAALRALTYAQRAARLADIVKLLQAKRGDYYAIATANSGTTRN 99 (534)
T ss_dssp ECTTTCCEEEEECCTT-------CCHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHCCCHH
T ss_pred ECCCCCCEEEEEeCCH-------HHHHHHHHHHHHHhhhhhhhCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhCCCHH
Confidence 5678899888876543 6999999999999 5999999999999999999999999999999999888765432
Q ss_pred hchhHHHHHHhhcChhHHHHHHHHHHHHhcccccc--------cccccccccCCCceEEEeecce-eEEEEEcCC-Cch-
Q 005041 349 AGYAKSLVSRLALKPGKISSLAKSIRILADMEEPI--------GQILKRTELADGLILEKTSCPL-GVLLIVFES-RPD- 417 (717)
Q Consensus 349 ~g~~~a~~~~~~~~~~~i~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~Pl-GVV~~I~p~-~P~- 417 (717)
++. .|+...++.+++++...+.. ++..+. ..+.....+++++|+ |||++|+|| ||.
T Consensus 100 ----ea~--------~ev~~~~~~~~~~a~~~~~~~~~~~~~~g~~~~~-~~~~~~~~~~~~~P~~GVv~~I~PwN~P~~ 166 (534)
T 2y53_A 100 ----DSA--------VDIDGGIFTLSYYAKLGASLGEVHALRDGSAESL-SKDRSFSAQHVLSPTRGVALFINAFNFPSW 166 (534)
T ss_dssp ----HHH--------HHHHHHHHHHHHHHHHHHTTCSCSEEEEEEEEEC-STTSSEEEEEEEEECSSCEEEECCTTCTTH
T ss_pred ----HHH--------HHHHHHHHHHHHHHHHHHhccccccccCCccccC-CCCCcccceEEEecCCCEEEEECCCchHHH
Confidence 221 24555666666666433211 111111 011222457789997 999999998 685
Q ss_pred hHHHHHHHHHHhCCEEEEeCCcchHHHHHHHHHHHHHhcccc-cCcCceEEecC-CChhhhhhcCCCCccEEEeecCHHH
Q 005041 418 ALVQIASLAIRSGNGLLLKGGKEAMRSNAILHKVITSAIPDT-VGEKLIGLVTS-REEIPDLLKLDDVIDLVIPRGSNKL 495 (717)
Q Consensus 418 ~~~~~~~~ALaaGN~vVlKps~~tp~t~~~l~~~~~~al~~a-lP~gvv~vv~~-~~~~~~~l~~~~~v~~v~fTGs~~~ 495 (717)
+++++++|||++||+||+||||.||+|+..+++++.++ . ||+|+||+|+| +.++++.| +++|+|+||||+++
T Consensus 167 ~~~~~~a~ALaaGN~VVlKPs~~tp~~~~~l~~l~~~a---G~lP~gvv~vv~g~~~~l~~~l---~~vd~V~FTGS~~~ 240 (534)
T 2y53_A 167 GLWEKAAPALLSGVPVIVKPATATAWLTQRMVADVVDA---GILPPGALSIICGSSAGLLDQI---RSFDVVSFTGSADT 240 (534)
T ss_dssp HHHHHHHHHHHTTCCEEEECCGGGHHHHHHHHHHHHHH---TCSCTTSEEECCSCCTTSGGGC---CTTCEEEEESCHHH
T ss_pred HHHHHHHHHHHcCCEEEEECCCcchHHHHHHHHHHHHh---CCCCCCeEEEEeCChHHHHhcc---cccCEEEEECCHHH
Confidence 66799999999999999999999999999999999872 3 69999999996 33333333 57999999999999
Q ss_pred HHHHHhhc-----CCCEEEecCCcceEEEcCCC-----CHHHHHHHHHhhccCCCc-cccccceEEEcCcccChhhHHHH
Q 005041 496 VSQIKEST-----KIPVLGHADGICHVYVDKSA-----NLDVAKNIVIDAKIDYPA-ACNAMETLLVHKDLACNGALNEL 564 (717)
Q Consensus 496 g~~i~~~a-----~~p~~lElGGk~p~iV~~dA-----Dl~~A~~~i~~~~~~n~g-~C~a~~rv~V~~~i~d~~f~~~l 564 (717)
||.|++.+ .||+++|||||||+||++|| |||.|++.+++|+|.|+| +|+|++|+|||+++| |+|+++|
T Consensus 241 G~~i~~~aa~a~~~k~v~lELGGk~p~iV~~dA~~~~~Dl~~Aa~~i~~~~~~n~GQ~C~a~~rvlV~~~i~-d~f~~~l 319 (534)
T 2y53_A 241 AATLRAHPAFVQRGARLNVQADSLNSAILCADATPDTPAFDLFIKEVVREMTVKSGQKCTAIRRAFVPEAAL-EPVLEAL 319 (534)
T ss_dssp HHHHHTSHHHHTTCCEEEEECCCCEEEEECTTCCTTSHHHHHHHHHHHHHHHGGGGCCTTSEEEEEEEGGGH-HHHHHHH
T ss_pred HHHHHHhhhhhcCCCcEEEEcCCCCeEEECCCccccccCHHHHHHHHHHHHHhCCCCcccCCCEEEEeccHH-HHHHHHH
Confidence 99998764 59999999999999999999 999999999999999987 999999999999999 8999999
Q ss_pred HHHHHHcCc---------------------------------eE-ecCcc--------ccccc--c-C----C-C--Ccc
Q 005041 565 VVELQHEGV---------------------------------GL-FGGPR--------ASKLL--Q-I----P-E--TRL 592 (717)
Q Consensus 565 ~~~~~~~~~---------------------------------~~-~g~~~--------~~~~~--p-i----~-~--~~~ 592 (717)
+++++++.+ ++ +|+.. ..++| | | + + |++
T Consensus 320 ~~~~~~~~vG~p~~~~~~~Gpli~~~~~~rv~~~i~~a~~ga~~~~GG~~~~~~~~~~~~g~~~~PTvl~~v~~~~~~~i 399 (534)
T 2y53_A 320 KAKLAKITVGNPRNDAVRMGSLVSREQYENVLAGIAALREEAVLAYDSSAVPLIDADANIAACVAPHLFVVNDPDNATLL 399 (534)
T ss_dssp HHHHTTCCBBCTTSTTCSBCCCSCHHHHHHHHHHHHHHHTSSEEEEECTTSCCBSCCTTTSCCCCCEEEECSCGGGCSST
T ss_pred HHHHHhccCCCCCcCCCCccCCCCHHHHHHHHHHHHHHHcCCEEEECCcccccccccCCCCceecCEEEEecCccccCHH
Confidence 999886532 23 35432 12443 5 3 2 2 589
Q ss_pred ccccccCceEEEEEeC---CH-----HHHHHHHHhcCCCceeEEEecCHHHHHHHHhcC--CeeeEEEcCCCC-------
Q 005041 593 FHHEYNSMVCTVEIVD---DV-----RAAIDHIHQHGSAHTDCIVAEDQKVAETFLCQV--DSAAVFHNASTR------- 655 (717)
Q Consensus 593 ~~eE~FGPVl~v~~~~---~~-----deAi~~aN~~~~GL~a~I~t~d~~~a~~~~~~l--~~G~v~iN~~~~------- 655 (717)
++||+||||++|++|+ |+ ||||+++|+++|||++||||+|.++++++++++ ++|+|+||+++.
T Consensus 400 ~~eEiFGPVl~v~~~~~~~~~~~~~~deAi~~aN~~~~gL~a~v~t~d~~~a~~~~~~l~~~aG~V~vN~~~~~~~~~~~ 479 (534)
T 2y53_A 400 HDVEVFGPVASVAPYRVTTDTNALPEAHAVALARRGQGSLVASIYSNDDAHLGRLALELADSHGRVHAISPSVQHSQTGH 479 (534)
T ss_dssp TTCCCSSSEEEEEEECCCCC---CTTHHHHHHHHTTSSEEEEEEECSCHHHHHHHHHHHTTTEEEEEEECGGGTTTCCCS
T ss_pred HhCCCcCCEEEEEEECCCCCcccCCHHHHHHHHhCCCCCceEEEECCCHHHHHHHHHHHHhhCCEEEEcCCccccccccc
Confidence 9999999999999999 99 999999999999999999999999999999999 899999998642
Q ss_pred --CCCCCccCCccccccccCcccc-cccchhhcccEEEEEEec
Q 005041 656 --FCDGARFGLGAEVGISTSRIHA-RGPVGVEGLLTTRWILRG 695 (717)
Q Consensus 656 --~~~~~pfG~g~~~G~~~~~~~~-~g~~g~~~ft~~k~v~~~ 695 (717)
..+.+||||.+.||+| ++ +|++|+++|++.|++...
T Consensus 480 ~~~~~~~pfGG~k~SG~G----r~~~g~~~l~~~~~~k~v~~~ 518 (534)
T 2y53_A 480 GNVMPMSLHGGPGRAGGG----EELGGLRALAFYHRRSAIQAA 518 (534)
T ss_dssp SCCCTTSEECCSGGGCSC----CEESGGGGGGGGEEEEEEEEE
T ss_pred CCCCCCCCCCCcccCCCC----CCcchHHHHHHHhhhheeecC
Confidence 2467899999999885 24 589999999999998764
No 50
>3haz_A Proline dehydrogenase; proline utilization A, PUTA, flavoenzyme, 1-pyrroline-5-carboxylate dehydrogenase, oxidoreductase; HET: FAD NAD; 2.10A {Bradyrhizobium japonicum usda 110}
Probab=100.00 E-value=2.9e-71 Score=661.51 Aligned_cols=384 Identities=17% Similarity=0.155 Sum_probs=329.9
Q ss_pred HhhHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHhhchhHHHHHHhhcChhHHHHHHH
Q 005041 292 QVGAREMAVAARESSRRLQALQSQDRRKILLDVADALEANESLIKVENEADVAAAQEAGYAKSLVSRLALKPGKISSLAK 371 (717)
Q Consensus 292 ~~~v~~av~~A~~A~~~w~~~~~~~R~~~L~~~a~~l~~~~~el~~~~~~d~~~~~~~g~~~a~~~~~~~~~~~i~~~~~ 371 (717)
.+|+++|+++|++||+.|+++|.++|.++|++++++|++|+++|++++++|+|++. .++ ..|+..+++
T Consensus 549 ~~dv~~Av~aA~~A~~~W~~~~~~eR~~iL~~~ad~l~~~~~eLa~~~~~E~GK~~----~ea--------~~Ev~~ai~ 616 (1001)
T 3haz_A 549 PDQAHAAVAAARAGFAGWSRTPAGIRAAALEQAAHLLESRSAHFIALLQREGGKTL----DDA--------LSELREAAD 616 (1001)
T ss_dssp HHHHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHTHHHHHHHHHHTTCCCH----HHH--------HHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCh----hHH--------HHHHHHHHH
Confidence 78999999999999999999999999999999999999999999999887765542 122 347888899
Q ss_pred HHHHHhcccccc-cccccccccCCCceEEEeecceeEEEEEcCC-Cch-hHHHHHHHHHHhCCEEEEeCCcchHHHHHHH
Q 005041 372 SIRILADMEEPI-GQILKRTELADGLILEKTSCPLGVLLIVFES-RPD-ALVQIASLAIRSGNGLLLKGGKEAMRSNAIL 448 (717)
Q Consensus 372 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~PlGVV~~I~p~-~P~-~~~~~~~~ALaaGN~vVlKps~~tp~t~~~l 448 (717)
.+++|+...+.. +..... ..+.+...+++++|+|||++|+|| ||. +.++++++||++||+||+||||.||+|+..+
T Consensus 617 ~lr~~a~~a~~~~g~~~~~-~~~~g~~~~~~~~P~GVV~~I~PwNfPl~i~~~~va~ALAAGNtVVlKPse~tp~ta~~l 695 (1001)
T 3haz_A 617 FCRYYAAQGRKLFGSETAM-PGPTGESNALTMRGRGVFVAISPWNFPLAIFLGQVTAALMAGNSVVAKPAEQTPRIAREA 695 (1001)
T ss_dssp HHHHHHHHHHHHHSSCEEC-CCCTTEEEEEEEEECSEEEEECCSSSTTHHHHHHHHHHHHTTCEEEEECCTTCHHHHHHH
T ss_pred HHHHHHHHHHhhcCccccc-cCCCCCceEEEEeCCcEEEEEcCCCChHHHHHHHHHHHHHcCCEEEEecchhhHHHHHHH
Confidence 999988665432 222111 112456678899999999999998 685 6789999999999999999999999999999
Q ss_pred HHHHHHhcccc-cCcCceEEecC-CChhhhhhcCCCCccEEEeecCHHHHHHHHhhc------CCCEEEecCCcceEEEc
Q 005041 449 HKVITSAIPDT-VGEKLIGLVTS-REEIPDLLKLDDVIDLVIPRGSNKLVSQIKEST------KIPVLGHADGICHVYVD 520 (717)
Q Consensus 449 ~~~~~~al~~a-lP~gvv~vv~~-~~~~~~~l~~~~~v~~v~fTGs~~~g~~i~~~a------~~p~~lElGGk~p~iV~ 520 (717)
++++++ + +|+|+||+|+| +++ ++.|..||+||+|+||||+++|+.|++.+ .+|+++|||||||+||+
T Consensus 696 ~ell~e----AGlP~gvv~vV~G~g~~-g~~L~~~p~Vd~V~FTGSt~vGr~I~~~aA~~~~~l~pv~lElGGknp~IV~ 770 (1001)
T 3haz_A 696 VALLHE----AGIPKSALYLVTGDGRI-GAALTAHPDIAGVVFTGSTEVARSINRALAAKDGPIVPLIAETGGINAMIAD 770 (1001)
T ss_dssp HHHHHH----HTCCTTTEEECCCCHHH-HHHHHHCTTCCEEEEESCHHHHHHHHHHHHHSSSCCCCEEEECCCCEEEEEC
T ss_pred HHHHHH----hCcCcCcEEEEecCchH-HHHHHhCCCcCEEEecCCHHHHHHHHHHHhcccCCCceEEeecCCcceEEEc
Confidence 999997 7 99999999996 455 88888999999999999999999998764 38999999999999999
Q ss_pred CCCCHHHHHHHHHhhccCCCc-cccccceEEEcCcccChhhHHHHHHHHHHcCce-------------------------
Q 005041 521 KSANLDVAKNIVIDAKIDYPA-ACNAMETLLVHKDLACNGALNELVVELQHEGVG------------------------- 574 (717)
Q Consensus 521 ~dADl~~A~~~i~~~~~~n~g-~C~a~~rv~V~~~i~d~~f~~~l~~~~~~~~~~------------------------- 574 (717)
+|||+|.|++.+++|+|.|+| +|+|++|+|||++|| |+|+++|+++++++.+.
T Consensus 771 ~dADld~Aa~~iv~s~f~naGQ~C~A~~rllV~e~i~-d~f~~~L~~~~~~l~vGdp~d~~t~~Gpli~~~~~~rv~~~i 849 (1001)
T 3haz_A 771 ATALPEQVADDVVTSAFRSAGQRCSALRLLFVQEDVA-DRMIEMVAGAARELKIGDPSDVATHVGPVIDVEAKQRLDAHI 849 (1001)
T ss_dssp TTSCHHHHHHHHHHHHHGGGGCSTTCEEEEEEEHHHH-HHHHHHHHHHHHTCCBSCTTSTTCSBCCCSCHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHhCCCCCCCCCceeeccHHHH-HHHHHHHHHHHHhcCCCCcccccCccCCCCCHHHHHHHHHHH
Confidence 999999999999999999987 999999999999999 89999999999876321
Q ss_pred --------EecCccc-ccc-c-c-C---CCCccccccccCceEEEEEeCC--HHHHHHHHHhcCCCceeEEEecCHHHHH
Q 005041 575 --------LFGGPRA-SKL-L-Q-I---PETRLFHHEYNSMVCTVEIVDD--VRAAIDHIHQHGSAHTDCIVAEDQKVAE 637 (717)
Q Consensus 575 --------~~g~~~~-~~~-~-p-i---~~~~~~~eE~FGPVl~v~~~~~--~deAi~~aN~~~~GL~a~I~t~d~~~a~ 637 (717)
+.|++.. .++ + | | +++++++||+||||++|++|++ +||||+++|+++|||++||||+|.++++
T Consensus 850 ~~a~~~g~v~gg~~~~~G~fv~PTvl~~~~~~~~~eEiFGPVL~V~~~~~~~ldeAI~~aN~t~yGLta~V~T~d~~~a~ 929 (1001)
T 3haz_A 850 ARMKTEARLHFAGPAPEGCFVAPHIFELTEAGQLTEEVFGPILHVVRYRPENLERVLRAIERTGYGLTLGVHSRIDDSIE 929 (1001)
T ss_dssp HHHHHHSEEEEECCCCSSSCCCCEEEECSSGGGCCSCCCSSEEEEEEECGGGHHHHHHHHHHTCCCSEEEEECSCHHHHH
T ss_pred HHHHhcCeEeccccCCCCcEEeeEEecCCCHHHHhccccCcEEEEEEeCCCCHHHHHHHHHcCCCCceEEEEcCCHHHHH
Confidence 1111111 122 3 5 3 4688999999999999999996 8999999999999999999999999999
Q ss_pred HHHhcCCeeeEEEcCCCCC--CCCCccCCccccccccCcccccccchhhcccEEEEEEecCc
Q 005041 638 TFLCQVDSAAVFHNASTRF--CDGARFGLGAEVGISTSRIHARGPVGVEGLLTTRWILRGNG 697 (717)
Q Consensus 638 ~~~~~l~~G~v~iN~~~~~--~~~~pfG~g~~~G~~~~~~~~~g~~g~~~ft~~k~v~~~~~ 697 (717)
++++++++|+|+||+++.. .+..||||.+.||+|. +.+|++|+++|++.|+|+++..
T Consensus 930 ~~a~~l~aG~V~VN~~~~~~~~~~~PFGG~k~SG~G~---~~gG~~gl~~ft~~K~v~~~~~ 988 (1001)
T 3haz_A 930 AIIDRVQVGNIYVNRNMIGAVVGVQPFGGNGLSGTGP---KAGGPHYLARFATEQTVTINTA 988 (1001)
T ss_dssp HHHHHCCCSEEEESSCSCCCCTTTSCBCCCGGGBCCC---CBTSTTSGGGGEEEEEEEEECG
T ss_pred HHHHhCCeeeEEEeCCCcCCCCCCCCCCCcccCcCCC---CCCCHHHHHHhceeeEEEECCc
Confidence 9999999999999997654 3567999999998862 3468999999999999998754
No 51
>3k9d_A LMO1179 protein, aldehyde dehydrogenase; structural genomics, PSI-2, protein initiative; 2.00A {Listeria monocytogenes}
Probab=100.00 E-value=2.1e-69 Score=606.09 Aligned_cols=385 Identities=18% Similarity=0.235 Sum_probs=313.2
Q ss_pred HhhHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHhhchhHHHHHHhhcChhHHHHHHH
Q 005041 292 QVGAREMAVAARESSRRLQALQSQDRRKILLDVADALEANESLIKVENEADVAAAQEAGYAKSLVSRLALKPGKISSLAK 371 (717)
Q Consensus 292 ~~~v~~av~~A~~A~~~w~~~~~~~R~~~L~~~a~~l~~~~~el~~~~~~d~~~~~~~g~~~a~~~~~~~~~~~i~~~~~ 371 (717)
.+|+++++++|++||+.|+++|.++|.++|++++++|++|+++|++++++|++++. .++.. .+....++
T Consensus 11 ~~~v~~av~~A~~A~~~w~~~~~~~R~~~L~~~a~~l~~~~~ela~~~~~e~Gk~~----~e~~~-------~~~~~~~~ 79 (464)
T 3k9d_A 11 IQEVRNLIESANKAQKELAAMSQQQIDTIVKAIADAGYGAREKLAKMAHEETGFGI----WQDKV-------IKNVFASK 79 (464)
T ss_dssp HHHHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHCCSC----HHHHH-------HHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhCcCH----HHHHH-------HHHHHHHH
Confidence 68999999999999999999999999999999999999999999999988876542 12211 13344556
Q ss_pred HHHHHhcccccccccccccccCCCceEEEeecceeEEEEEcCC-Cchh-HHHHHHHHHHhCCEEEEeCCcchHHHHHHHH
Q 005041 372 SIRILADMEEPIGQILKRTELADGLILEKTSCPLGVLLIVFES-RPDA-LVQIASLAIRSGNGLLLKGGKEAMRSNAILH 449 (717)
Q Consensus 372 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~PlGVV~~I~p~-~P~~-~~~~~~~ALaaGN~vVlKps~~tp~t~~~l~ 449 (717)
.+.+|+...+..+.... +.+...+++++|+|||++|+|| ||.. .++++++||++||+||+||||.||+|+..++
T Consensus 80 ~~~~~~~~~~~~g~~~~----~~~~~~~~~~~P~GVv~~I~P~N~P~~~~~~~~~~ALaaGN~VVlKps~~ap~t~~~l~ 155 (464)
T 3k9d_A 80 HVYNYIKDMKTIGMLKE----DNEKKVMEVAVPLGVVAGLIPSTNPTSTVIYKTLISIKAGNSIVFSPHPNALKAILETV 155 (464)
T ss_dssp HHHHHHTTCCCSEEEEE----ETTTTEEEEEEECCEEEEEECSSSHHHHHHHHHHHHHHTTCEEEEEECGGGHHHHHHHH
T ss_pred HHHHhhhcccccceecc----CCCceeEEEEecceEEEEECCCcChHHHHHHHHHHHHHhCCeEEEECCcchHHHHHHHH
Confidence 66666543333332211 2345678889999999999998 7964 5799999999999999999999999999999
Q ss_pred HHHHHhcccc-cCcCceEEecC-CChhhhhhcCCCCccEEEeecCHHHHHHHHhhcCCCEEEecC-CcceEEEcCCCCHH
Q 005041 450 KVITSAIPDT-VGEKLIGLVTS-REEIPDLLKLDDVIDLVIPRGSNKLVSQIKESTKIPVLGHAD-GICHVYVDKSANLD 526 (717)
Q Consensus 450 ~~~~~al~~a-lP~gvv~vv~~-~~~~~~~l~~~~~v~~v~fTGs~~~g~~i~~~a~~p~~lElG-Gk~p~iV~~dADl~ 526 (717)
+++.+++.++ +|+|++|+|++ +.+.++.|..||+||+|+||||+++.+.++ ...||+ +|+| ||+|+||++||||+
T Consensus 156 ~ll~~~~~~aG~P~gvv~vv~g~~~~~~~~L~~~~~vd~I~fTGs~~v~~~a~-~~~kpv-lelG~G~~p~iV~~dADl~ 233 (464)
T 3k9d_A 156 RIISEAAEKAGCPKGAISCMTVPTIQGTDQLMKHKDTAVILATGGSAMVKAAY-SSGTPA-IGVGPGNGPAFIERSANIP 233 (464)
T ss_dssp HHHHHHHHHTTCCTTSEEECSSCCHHHHHHHHHCTTEEEEEECSCHHHHHHHT-TSSSCE-EEBCCCCCEEEECTTSCHH
T ss_pred HHHHHHHHHhCCCCCeEEEEeCCCHHHHHHHHhCCCCCEEEEeCChHHHHHHH-hcCCcE-EeeCCCCCeEEECCCCCHH
Confidence 9998888889 99999999996 556777788899999999999999877764 347999 6777 99999999999999
Q ss_pred HHHHHHHhhccCCCc-cccccceEEEcCcccChhhHHHHHHHHH-------HcCce--E-e-c---Cccc--------cc
Q 005041 527 VAKNIVIDAKIDYPA-ACNAMETLLVHKDLACNGALNELVVELQ-------HEGVG--L-F-G---GPRA--------SK 583 (717)
Q Consensus 527 ~A~~~i~~~~~~n~g-~C~a~~rv~V~~~i~d~~f~~~l~~~~~-------~~~~~--~-~-g---~~~~--------~~ 583 (717)
.|++.+++|+|+|+| +|+|++|+|||+++| |+|+++|+++.. +..+. + - . ++.. ..
T Consensus 234 ~Aa~~i~~~~~~n~Gq~C~a~~rvlV~~~i~-d~f~~~l~~~~~~~~~~~~~~~~g~~~~~~~~~~gp~i~~~~~~~i~~ 312 (464)
T 3k9d_A 234 RAVKHILDSKTFDNGTICASEQSVVVERVNK-EAVIAEFRKQGAHFLSDAEAVQLGKFILRPNGSMNPAIVGKSVQHIAN 312 (464)
T ss_dssp HHHHHHHHHHTGGGGCSTTSCCEEEEEHHHH-HHHHHHHHHTTEEECCHHHHHHHHHHHBCTTSCBCGGGTTCCHHHHHH
T ss_pred HHHHHHHHHHhcCCCCCCCCCcEEEEeHHHH-HHHHHHHHHhhhhhcChhhhhhhcccccCCCCccCcccCHHHHHHHHH
Confidence 999999999999987 999999999999999 899999987641 11000 0 0 0 0000 00
Q ss_pred cc----c------------CCCCccccccccCceEEEEEeCCHHHHH----HHHHhcCCCceeEEEecCHHHHHHHHhcC
Q 005041 584 LL----Q------------IPETRLFHHEYNSMVCTVEIVDDVRAAI----DHIHQHGSAHTDCIVAEDQKVAETFLCQV 643 (717)
Q Consensus 584 ~~----p------------i~~~~~~~eE~FGPVl~v~~~~~~deAi----~~aN~~~~GL~a~I~t~d~~~a~~~~~~l 643 (717)
++ + +++...+.||+||||++|++|+|+|||| +++|+++|||++||||+|.+++++|++++
T Consensus 313 ~~~~a~~~ga~vl~gg~~~v~~~~~~~~E~fgPVl~v~~~~~~~eAi~~ai~~~n~~~~gl~a~i~t~d~~~a~~~~~~l 392 (464)
T 3k9d_A 313 LAGLTVPADARVLIAEETKVGAKIPYSREKLAPILAFYTAETWQEACELSMDILYHEGAGHTLIIHSEDKEIIREFALKK 392 (464)
T ss_dssp HTTCCCCTTCCEEEEECCCCSTTCGGGSCCCSSEEEEEEESSHHHHHHHHHHHHHHTTTEEEEEEECSCHHHHHHHHHHS
T ss_pred HhhhhhcCCCEEEEcCCCCCCCCCcccccccCceEEEEEeCCHHHHHHHHHHHHhcCCCCCeEEEEeCCHHHHHHHHHhC
Confidence 00 1 1222345699999999999999999997 79999999999999999999999999999
Q ss_pred CeeeEEEcCCCC---------CCCCCccCCccccccccCcccccccchhhcccEEEEEEecCcee
Q 005041 644 DSAAVFHNASTR---------FCDGARFGLGAEVGISTSRIHARGPVGVEGLLTTRWILRGNGHV 699 (717)
Q Consensus 644 ~~G~v~iN~~~~---------~~~~~pfG~g~~~G~~~~~~~~~g~~g~~~ft~~k~v~~~~~~~ 699 (717)
++|+|+||+++. ..+.+|||+|.+ |.+ .++|..|+++|++.|+|.++.++.
T Consensus 393 ~~G~v~vN~~~~~~~~g~~~~~~~~~~~G~G~~-G~g----~~~~~~~~~~~~~~k~v~~~~~~~ 452 (464)
T 3k9d_A 393 PVSRLLVNTPGALGGIGATTNLVPALTLGCGAV-GGS----SSSDNIGPENLFNIRRIATGVLEL 452 (464)
T ss_dssp SEEEEEESSCHHHHHTTSSSSSCCCSCBBCTGG-GTC----SCCSBCCGGGSEEEEEEEECCCCH
T ss_pred CEeEEEEECCccccccccCCCCCccccccCcCC-CCC----cCCCCCCHHHheEEEEEEecCCch
Confidence 999999999875 457789998664 443 235889999999999999987653
No 52
>3my7_A Alcohol dehydrogenase/acetaldehyde dehydrogenase; ACDH, PSI, MCSG, structural genomics, midwest center for STR genomics; 2.30A {Vibrio parahaemolyticus}
Probab=100.00 E-value=5.2e-67 Score=584.84 Aligned_cols=382 Identities=16% Similarity=0.212 Sum_probs=296.5
Q ss_pred HhhHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHhhchhHHHHHHhhcChhHHHHHHH
Q 005041 292 QVGAREMAVAARESSRRLQALQSQDRRKILLDVADALEANESLIKVENEADVAAAQEAGYAKSLVSRLALKPGKISSLAK 371 (717)
Q Consensus 292 ~~~v~~av~~A~~A~~~w~~~~~~~R~~~L~~~a~~l~~~~~el~~~~~~d~~~~~~~g~~~a~~~~~~~~~~~i~~~~~ 371 (717)
.+|+++++++|++||+.|+++|.++|.++|++++++|++|+++|++++++|+|++. .++.. .++...++
T Consensus 6 ~~~v~~av~~A~~A~~~w~~~~~~~R~~il~~~a~~l~~~~~~la~~~~~e~Gk~~----~e~~~-------~~~~~a~~ 74 (452)
T 3my7_A 6 MAELDAMIARVKKAQEEFATYSQEQVDKIFRAASLAANQARIPLAQQAVEESGMGI----VEDKV-------IKNHFASE 74 (452)
T ss_dssp HHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHCCSC----HHHHH-------HHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhCCCH----HHHHH-------HHHHHHHH
Confidence 78999999999999999999999999999999999999999999999887776542 22211 13445555
Q ss_pred HHHHHhcccccccccccccccCCCceEEEeecceeEEEEEcCC-Cch-hHHHHHHHHHHhCCEEEEeCCcchHHHHHHHH
Q 005041 372 SIRILADMEEPIGQILKRTELADGLILEKTSCPLGVLLIVFES-RPD-ALVQIASLAIRSGNGLLLKGGKEAMRSNAILH 449 (717)
Q Consensus 372 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~PlGVV~~I~p~-~P~-~~~~~~~~ALaaGN~vVlKps~~tp~t~~~l~ 449 (717)
.+..+....+..|.... +.+...+.+++|+|||++|+|| ||. +.++++++||++||+||+||||.||+|+..++
T Consensus 75 ~~~~~~~~~~~~g~~~~----~~~~~~~~~~~P~GVv~~I~P~N~P~~~~~~k~~~ALaaGN~VVlKps~~tp~~~~~~~ 150 (452)
T 3my7_A 75 FIYNKYKDEQTCGILEE----DDNLGTMTIAEPVGIICGIVPTTNPTSTAIFKSLISLKTRNGIIFSPHPRAKNSTNDAA 150 (452)
T ss_dssp HHHHHHTTCCCSEEC-----------CEEEEEECCEEEEEECTTSTTHHHHHHHHHHHHTTCEEEEEECGGGHHHHHHHH
T ss_pred HHHHHhhhccccccccC----CCCCceEEEecCceEEEEEcCCCChHHHHHHHHHHHHhcCCeEEEEcCCCchHHHHHHH
Confidence 56333322222332211 1233457789999999999998 796 56799999999999999999999999999999
Q ss_pred HHHHHhcccc-cCcCceEEecC-CChhhhhhcCCCCccEEEeecCHHHHHHHHhhcCCCEEEecCCcceEEEcCCCCHHH
Q 005041 450 KVITSAIPDT-VGEKLIGLVTS-REEIPDLLKLDDVIDLVIPRGSNKLVSQIKESTKIPVLGHADGICHVYVDKSANLDV 527 (717)
Q Consensus 450 ~~~~~al~~a-lP~gvv~vv~~-~~~~~~~l~~~~~v~~v~fTGs~~~g~~i~~~a~~p~~lElGGk~p~iV~~dADl~~ 527 (717)
+++++++.++ +|+|++|+|++ +.++++.|..||+||+|+||||+++++..+ ...||+++|||||+|+||++|||+++
T Consensus 151 ~~~~~a~~~aG~P~gvv~~v~g~~~~~~~~L~~~p~v~~V~fTGs~~~~~~a~-~~~kp~~~e~gG~~p~iV~~dADl~~ 229 (452)
T 3my7_A 151 KLVLDAAVAAGAPKDIIGWIDQPSVELSNALMKHDDIALILATGGPGMVKAAY-SSGKPAIGVGAGNVPVVIDETADIKR 229 (452)
T ss_dssp HHHHHHHHHTTCCTTSEEECSSCCHHHHHHHHHCTTCCEEEECSCHHHHHHHH-TSSSCEEECC--CEEEEECTTSCHHH
T ss_pred HHHHHHHHHcCCCcCcEEEEcCCCHHHHHHHHhCCCccEEEEECcHHHHHHHH-hcCCCEEecCCCCCeEEEeCCCCHHH
Confidence 9999988889 99999999996 557788888899999999999999988764 45799999999999999999999999
Q ss_pred HHHHHHhhccCCCc-cccccceEEEcCcccChhhHHHHHHH------------HHHc-------CceEecCccc-----c
Q 005041 528 AKNIVIDAKIDYPA-ACNAMETLLVHKDLACNGALNELVVE------------LQHE-------GVGLFGGPRA-----S 582 (717)
Q Consensus 528 A~~~i~~~~~~n~g-~C~a~~rv~V~~~i~d~~f~~~l~~~------------~~~~-------~~~~~g~~~~-----~ 582 (717)
|++.+++|+|+|+| +|+|++|+|||+++| |+|+++|+++ ++++ +.+++|+... .
T Consensus 230 Aa~~iv~s~~~~~GQ~C~a~~rv~V~~~i~-d~f~~~l~~~~gpli~~~~~~~v~~~i~~~~~~~a~v~G~~~~~~~~~~ 308 (452)
T 3my7_A 230 AVASVLMSKTFDNGVVCASEQAVIVVDEVY-DEVKERFASHKAHVLSKTDADKVRKVLLIDGALNAKIVGQPATAIAEMA 308 (452)
T ss_dssp HHHHHHHGGGGGGGCCTTCEEEEEEEGGGH-HHHHHHHHTTTEEECCHHHHHHHHHHHEETTEECGGGTTCCHHHHHHHH
T ss_pred HHHHHHHHHhCCCCCccCCCcEEEEcHHHH-HHHHHHHHHhCCCcCCHHHHHHHHHHHHhhcccCCeEecCccchhHHhC
Confidence 99999999999987 999999999999999 8999999763 2211 2223344321 1
Q ss_pred cc-c-c-C------------CCCccccccccCceEEEEEeCCHHHHHHHHHhcC----CCceeEEEecCHHHHHH---HH
Q 005041 583 KL-L-Q-I------------PETRLFHHEYNSMVCTVEIVDDVRAAIDHIHQHG----SAHTDCIVAEDQKVAET---FL 640 (717)
Q Consensus 583 ~~-~-p-i------------~~~~~~~eE~FGPVl~v~~~~~~deAi~~aN~~~----~GL~a~I~t~d~~~a~~---~~ 640 (717)
++ + | + ++++++ +|+||||++|++|+|+||||+++|++. |||++||||+|.+++++ |+
T Consensus 309 G~~v~pt~~vl~~~~~~~v~~~~~~~-~E~FgPVl~v~~~~~~~eAi~~an~~~~~~g~Glta~i~t~d~~~a~~i~~~a 387 (452)
T 3my7_A 309 GVKVPADTKVLIGEGLGKVSYDDAFA-HEKLSPTLGMFRADNFEDAVAQAVTMVEIGGIGHTSGLYTNQDVNADRIRYFG 387 (452)
T ss_dssp TCCCCTTCCEEEEECSSSCCTTCGGG-SCCSSSEEEEEEESSHHHHHHHHHHHHHHHSSCCEEEEESCTTTCHHHHHHHH
T ss_pred CceeCCCeeEEeeccccCCCCcchhh-cCccCcEEEEEEeCCHHHHHHHHHhcccccCCCCEEEEEcCCHHHHHHHHHHH
Confidence 22 2 2 2 134554 589999999999999999999999985 99999999999887777 99
Q ss_pred hcCCeeeEEEcCCCCCC-----------CCCccCCccccccccCcccccccchhhcccEEEEEEecC
Q 005041 641 CQVDSAAVFHNASTRFC-----------DGARFGLGAEVGISTSRIHARGPVGVEGLLTTRWILRGN 696 (717)
Q Consensus 641 ~~l~~G~v~iN~~~~~~-----------~~~pfG~g~~~G~~~~~~~~~g~~g~~~ft~~k~v~~~~ 696 (717)
+++++|+|+||+++.+. +.+++|.|.+.|.+. .++.+.++|.+.|+|..+.
T Consensus 388 ~~l~~G~V~VN~~~~~Gg~G~~~~f~~~~~~t~g~g~~Gg~~~-----~~nv~~~~l~n~~~v~~~~ 449 (452)
T 3my7_A 388 DKMKTARILINIPTTHGGIGDLYNFNVAPSLTLGCGSWGGNSI-----SENVGPKHLINKKTVAKRA 449 (452)
T ss_dssp HHCCCSEEEESCCCC---------------------------------CCCCCGGGGEEEEEEECCC
T ss_pred HhCCEEEEEECCCCCCcccccccccCcCceEeeeccccCCCcc-----CCCCChhHeeeeeEEEeec
Confidence 99999999999987541 223456665555543 4678999999999998754
No 53
>2j5v_A Glutamate 5-kinase; proline biosynthesis, gamma glutamyl kinase, amino-acid biosynthesis, transferase, feedback regulation, PUA domain; HET: RGP; 2.5A {Escherichia coli} PDB: 2j5t_A* 2w21_A
Probab=100.00 E-value=2.9e-39 Score=348.87 Aligned_cols=255 Identities=38% Similarity=0.565 Sum_probs=187.6
Q ss_pred hccCCeEEEEeCCcccccCCCcccHHHHHHHHHHHHHHHHCCCeEEEEecChhHhhHHHHhhhhccCCCcccccCccccc
Q 005041 13 LKNVKRVVVKVGTAVVTRSDGRLALGRLGALLEQLKELNSQGFEIILVSSGAVGVGRQRLRYRKLVNSSLADLQKPQNEL 92 (717)
Q Consensus 13 ~~~~~~iVvKiGGs~l~~~~~~~~~~~l~~l~~~Ia~l~~~G~~vviVhGGg~~~~~~~l~~~~~~~~~~~~l~~~~~~l 92 (717)
|++.+++|||||||+++++++.++.+++..++++|+.+++.|+++||||||+++.|...++... .+..++
T Consensus 1 ~~~~k~iVIKiGGs~l~~~~~~~~~~~l~~la~~Ia~l~~~G~~vVlV~gGgi~~g~~~lg~~~----~~~~l~------ 70 (367)
T 2j5v_A 1 MSDSQTLVVKLGTSVLTGGSRRLNRAHIVELVRQCAQLHAAGHRIVIVTSGAIAAGREHLGYPE----LPATIA------ 70 (367)
T ss_dssp --CCCEEEEEECHHHHTTTSSSCCHHHHHHHHHHHHHHHHTTCEEEEEECCHHHHHHHHHTSCC----CCSSHH------
T ss_pred CCCCCEEEEEECcHHhcCCCCCcCHHHHHHHHHHHHHHHhCCCcEEEEEcCHHHHHHHHcCCCC----CCCCHH------
Confidence 3456899999999999998777889999999999999999999999999999998886554321 212222
Q ss_pred hHHHHHHhchHHHHHHHHHHhhcCCCCcceeEecccccCchhHhhHHHHHHHHHHhCCCeEEecCCCeeeccCCCCCCCC
Q 005041 93 DGKACAAVGQSSLMALYDTLFSQLDVTSSQLLVTDSDFRDEDFRKQLYDTVQSLLDLRVIPIFNENDAVSTRKAPYEDSS 172 (717)
Q Consensus 93 ~~~~~~a~G~~~~~~~~~~~l~~~g~~~~~~~~~~~d~~~~~~~~~~~~~i~~lL~~g~vPVv~g~d~v~~~~~~~~~~~ 172 (717)
..++++++|+..++.+|...|..+|+++.|++++.+|+.++.++.+..+.++++|++|+|||+++||.+.+ .+
T Consensus 71 ~~qa~aavGq~~l~~~~~~~l~~~G~~~~qvllt~~d~~~~~r~~n~~~~i~~LL~~g~IPIv~end~v~~-------~e 143 (367)
T 2j5v_A 71 SKQLLAAVGQSRLIQLWEQLFSIYGIHVGQMLLTRADMEDRERFLNARDTLRALLDNNVVPVINENDAVAT-------AE 143 (367)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTTTCCEEEEEECGGGGSSHHHHHHHHHHHHHHHHTTCEEEEEECTTSCC-------GG
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcCCceEEEEEecccccCceEEEhHHHHHHHHHHCCCEEEECCCCceec-------cc
Confidence 24466799999999999999999999999999999999887777766689999999999999999887665 23
Q ss_pred CeeecchHHHHHHHhhcCCCEEEEecccCccccCCCc-cccccccccccc--cchhHHHhcCCCCCcccCChHHHHHHHH
Q 005041 173 GIFWDNDSLAGLLALELKADLLVLLSDVEGLYSGPPS-EPNSKLIHTYIR--AKHQAEITFGDKSRVGRGGMTAKVNAAY 249 (717)
Q Consensus 173 ~~~~~sD~~A~~lA~~L~Ad~li~lTDV~GV~~~dP~-~p~a~~i~~it~--~e~~~~~~~gs~~~~~tggM~~Kv~aa~ 249 (717)
..++|+|++|+.+|.+|+||+|+|+|||||||++||+ +|++++|++|++ +|+.++.. ++.+..++|||.+|+++|.
T Consensus 144 l~~gd~D~lAa~vA~~l~Ad~LiilTDVdGvy~~dP~~~p~a~~I~~i~~~~~e~~~l~~-~~~s~~gtGgM~~Kl~Aa~ 222 (367)
T 2j5v_A 144 IKVGDNDNLSALAAILAGADKLLLLTDQKGLYTADPRSNPQAELIKDVYGIDDALRAIAG-DSVSGLGTGGMSTKLQAAD 222 (367)
T ss_dssp GCCCSHHHHHHHHHHHHTCSEEEEEECC-------------------------------------------CHHHHHHHH
T ss_pred ccCCCHHHHHHHHHHhcCCCEEEEeecCCceECCCCCCCCCCeEeeeeCCCHHHHHHHhh-ccCCCcCcCccHHHHHHHH
Confidence 3459999999999999999999999999999999995 999999999999 88876543 3334578999999999999
Q ss_pred HHHHcCCcEEEEeCCCcchHHHHhcCCcceEEEecC
Q 005041 250 CAACAGIPVVITSGFAMDSIIKVLEGKRVGTLFHRD 285 (717)
Q Consensus 250 ~a~~~gi~v~I~~g~~~~~l~~~~tg~~iGT~i~a~ 285 (717)
.|+++|++++|+|++.|+.+.++++++..||++.+.
T Consensus 223 ~a~~~Gv~v~I~~g~~~~~L~~~l~g~~~GT~i~~~ 258 (367)
T 2j5v_A 223 VACRAGIDTIIAAGSKPGVIGDVMEGISVGTLFHAQ 258 (367)
T ss_dssp HHHHTTCEEEEEETTSTTHHHHHHHTCCCSEEECCC
T ss_pred HHHHcCCCEEEEcCCCchHHHHHhcCCCCcEEEEcC
Confidence 999999999999999999999999999999999875
No 54
>2ako_A Glutamate 5-kinase; structural genomics, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics, nysgxrc; HET: ADP; 2.20A {Campylobacter jejuni} SCOP: c.73.1.3
Probab=100.00 E-value=3.2e-37 Score=318.40 Aligned_cols=244 Identities=31% Similarity=0.527 Sum_probs=201.1
Q ss_pred CeEEEEeCCcccccCCCcccHHHHHHHHHHHHHHHHCCCeEEEEecChhHhhHHHHhhhhccCCCcccccCccccchHHH
Q 005041 17 KRVVVKVGTAVVTRSDGRLALGRLGALLEQLKELNSQGFEIILVSSGAVGVGRQRLRYRKLVNSSLADLQKPQNELDGKA 96 (717)
Q Consensus 17 ~~iVvKiGGs~l~~~~~~~~~~~l~~l~~~Ia~l~~~G~~vviVhGGg~~~~~~~l~~~~~~~~~~~~l~~~~~~l~~~~ 96 (717)
+++|||||||+++ ++++++.+++.+++++|+.+++. +++|||||||++.+...++ .+. .. ....++
T Consensus 2 k~iViKlGGs~l~-~~~~~~~~~~~~~~~~i~~l~~~-~~vVlVhgGg~~~~~~~~g----~~~--~~------~~~~~~ 67 (251)
T 2ako_A 2 KRIVVKVGSHVIS-EENTLSFERLKNLVAFLAKLMEK-YEVILVTSAAISAGHTKLD----IDR--KN------LINKQV 67 (251)
T ss_dssp CEEEEEECHHHHB-CSSSBCHHHHHHHHHHHHHHHHH-SEEEEEECCHHHHHHHHCC----CCS--SS------HHHHHH
T ss_pred CEEEEEeCcceeC-CCCCCCHHHHHHHHHHHHHHHhC-CCEEEEECCHHHHHHHHhC----Ccc--CC------chHHHH
Confidence 6899999999999 65567888899999999999888 9999999999776554332 211 11 112458
Q ss_pred HHHhchHHHHHHHHHHhhcCCCCcceeEecccccCchhHhhHHHHHHHHHHhCCCeEEecCCCeeeccCCCCCCCCCeee
Q 005041 97 CAAVGQSSLMALYDTLFSQLDVTSSQLLVTDSDFRDEDFRKQLYDTVQSLLDLRVIPIFNENDAVSTRKAPYEDSSGIFW 176 (717)
Q Consensus 97 ~~a~G~~~~~~~~~~~l~~~g~~~~~~~~~~~d~~~~~~~~~~~~~i~~lL~~g~vPVv~g~d~v~~~~~~~~~~~~~~~ 176 (717)
+.++++..++.+|...|..+|+++.|+.++..|+.+..++.+..+.++.+|++|+|||+++||.+.. .+..++
T Consensus 68 l~~~~q~~l~~~~~~~l~~~G~~~~~i~~~~~~~~~~~~~~~~~~~i~~ll~~g~ipVi~~~d~v~~-------~~~~~~ 140 (251)
T 2ako_A 68 LAAIGQPFLISVYNELLAKFNKLGGQILLTGKDFDSRKATKHAKNAIDMMINLGILPIINENDATAI-------EEIVFG 140 (251)
T ss_dssp HHHHHHHHHHHHHHHHHGGGTCCEEEEEECTGGGGCHHHHHHHHHHHHHHHHTTCEEEEEECTTTCC-------HHHHBT
T ss_pred HHHHHHHHHHHHHHHHHHHcCCcEEEEEeccchhcCcceEehHHHHHHHHHHCCCEEEEeCCCceee-------cceeec
Confidence 8899999999999999999999999988888888776555554589999999999999998775443 122359
Q ss_pred cchHHHHHHHhhcCCCEEEEecccCccccCCCc-ccccccccccccc--chhHHHhcCCCCCcccCChHHHHHHHHHHHH
Q 005041 177 DNDSLAGLLALELKADLLVLLSDVEGLYSGPPS-EPNSKLIHTYIRA--KHQAEITFGDKSRVGRGGMTAKVNAAYCAAC 253 (717)
Q Consensus 177 ~sD~~A~~lA~~L~Ad~li~lTDV~GV~~~dP~-~p~a~~i~~it~~--e~~~~~~~gs~~~~~tggM~~Kv~aa~~a~~ 253 (717)
|+|++|+.+|.+|+||+|+|+|||||||++||+ +|++++|++|+++ |+.+++. ++.+..++|||.+|+++|..|++
T Consensus 141 ~~D~~Aa~lA~~l~Ad~liilTdVdGVy~~dP~~~~~a~~i~~i~~~~~e~~~~~~-~~~~~~~~ggm~~k~~aa~~a~~ 219 (251)
T 2ako_A 141 DNDSLSAYATHFFDADLLVILSDIDGFYDKNPSEFSDAKRLEKITHIKEEWLQATI-KTGSEHGTGGIVTKLKAAKFLLE 219 (251)
T ss_dssp TTHHHHHHHHHHTTCSEEEEEESSCSCBSSCTTTCTTCCBCCEESCCCGGGC----------CBSCHHHHHHHHHHHHHH
T ss_pred CchHHHHHHHHhcCCCEEEEEeCCCceeeCCCCCCCCCeEeeEeccchHHHHHHhc-ccCCCCccCchHHHHHHHHHHHH
Confidence 999999999999999999999999999999995 8999999999998 8876543 22235789999999999999999
Q ss_pred cCCcEEEEeCCCcchHHH--HhcCCcceEEE
Q 005041 254 AGIPVVITSGFAMDSIIK--VLEGKRVGTLF 282 (717)
Q Consensus 254 ~gi~v~I~~g~~~~~l~~--~~tg~~iGT~i 282 (717)
+|++++|+||+.|+.+.+ +++|+..||.+
T Consensus 220 ~gv~v~I~~g~~~~~l~~~~~~~g~~~GT~i 250 (251)
T 2ako_A 220 HNKKMFLASGFDLSVAKTFLLEDKQIGGTLF 250 (251)
T ss_dssp TTCEEEEEESSSCHHHHHHHHSCCCCSSEEE
T ss_pred CCCeEEEEeCCChhhhhhhHHhcCCCCceEe
Confidence 999999999999999988 99998899986
No 55
>3d40_A FOMA protein; fosfomycin, antibiotic resistance, kinase, phosphoryl transfer, transferase; 1.53A {Streptomyces wedmorensis} PDB: 3d41_A* 3qun_A* 3quo_A* 3qur_A* 3qvf_A* 3qvh_A*
Probab=100.00 E-value=4.1e-34 Score=299.78 Aligned_cols=255 Identities=15% Similarity=0.165 Sum_probs=190.0
Q ss_pred hHHhhccC-CeEEEEeCCcccccCC--CcccHHHHHHHHHHHHHHHHCCC-eEEEEecChhHhhHHHHhhhhccCCCccc
Q 005041 9 TRDFLKNV-KRVVVKVGTAVVTRSD--GRLALGRLGALLEQLKELNSQGF-EIILVSSGAVGVGRQRLRYRKLVNSSLAD 84 (717)
Q Consensus 9 ~~~~~~~~-~~iVvKiGGs~l~~~~--~~~~~~~l~~l~~~Ia~l~~~G~-~vviVhGGg~~~~~~~l~~~~~~~~~~~~ 84 (717)
+|+.+.+. +++||||||+++++++ ..++.+++..++++|+.+++.|+ ++|||||||++++..+ +.. +.+..+.
T Consensus 15 ~~~~~~~~~~~iVIKlGGs~l~~~~~~~~~~~~~l~~la~~Ia~l~~~G~~~vViVhGgG~~~~~~l-~~~-~~~~~~~- 91 (286)
T 3d40_A 15 VPRGSHMTPDFLAIKVGGSLFSRKDEPGSLDDDAVTRFARNFARLAETYRGRMVLISGGGAFGHGAI-RDH-DSTHAFS- 91 (286)
T ss_dssp CCCSTTSCCSEEEEEECGGGTBCTTSTTCBCHHHHHHHHHHHHHHHHHTTTSEEEEECCCCC--------------CCT-
T ss_pred chhhhccCCCEEEEEeCchHhCCCcccccchHHHHHHHHHHHHHHHHcCCCeEEEEECCHHHHHHHH-HHc-CCCcccc-
Confidence 45666664 5899999999999875 36888899999999999999998 6999999999777654 222 2211111
Q ss_pred ccCccccchHHHHHHhchHHHHHHHHHHhhcCCCCcceeEecccccCchhHhhHHHHHHHHHHhCCCeEEecCCCeeecc
Q 005041 85 LQKPQNELDGKACAAVGQSSLMALYDTLFSQLDVTSSQLLVTDSDFRDEDFRKQLYDTVQSLLDLRVIPIFNENDAVSTR 164 (717)
Q Consensus 85 l~~~~~~l~~~~~~a~G~~~~~~~~~~~l~~~g~~~~~~~~~~~d~~~~~~~~~~~~~i~~lL~~g~vPVv~g~d~v~~~ 164 (717)
+...++|+..++..+...|..+|+++.++...+.++...+.+.++.+.++++|++|.|||++| |.+...
T Consensus 92 ----------~~~~~vt~g~l~~~l~~~l~~~G~~a~~l~~~~~~~t~dg~~~~~~~~i~~lL~~g~IpVi~g-d~~~~~ 160 (286)
T 3d40_A 92 ----------LAGLTEATFEVKKRWAEKLRGIGVDAFPLQLAAMCTLRNGIPQLRSEVLRDVLDHGALPVLAG-DALFDE 160 (286)
T ss_dssp ----------THHHHHHHHHHHHHHHHHHHHTTCCEEECCGGGTEEEETTEEEECCSHHHHHHHTTCEEEEEC-EEEEBT
T ss_pred ----------hhcchhhHHHHHHHHHHHHHHcCCcEEEEEeecCCcccCCeEEehHHHHHHHHHCcCEEEEcC-CeEEcC
Confidence 135677777788889999999999988876654443100122234578999999999999997 544431
Q ss_pred CCCCCCCCCe-eecchHHHHHHHhh-cCCCEEEEecccCccccCCCccccccccccccccchhHHHh--cCCCCCcccCC
Q 005041 165 KAPYEDSSGI-FWDNDSLAGLLALE-LKADLLVLLSDVEGLYSGPPSEPNSKLIHTYIRAKHQAEIT--FGDKSRVGRGG 240 (717)
Q Consensus 165 ~~~~~~~~~~-~~~sD~~A~~lA~~-L~Ad~li~lTDV~GV~~~dP~~p~a~~i~~it~~e~~~~~~--~gs~~~~~tgg 240 (717)
++.. ++|+|++|+.+|.+ |+||+|+|+|||||||++||+ ++++|++|+++|+++++. .++.+.+++||
T Consensus 161 ------~g~~~~~~~D~~Aa~lA~~~l~Ad~LiilTDVdGVy~~dP~--~a~~i~~is~~e~~~l~~~~~~~~~~~~tgg 232 (286)
T 3d40_A 161 ------HGKLWAFSSDRVPEVLLPMVEGRLRVVTLTDVDGIVTDGAG--GDTILPEVDARSPEQAYAALWGSSEWDATGA 232 (286)
T ss_dssp ------TSCEEEECGGGHHHHTTTTCCSCEEEEEEESSSSCEECC-----CEECCEEETTSCHHHHHHHHHSCC----CH
T ss_pred ------CCCEEeeCHHHHHHHHHHhhCCCCEEEEecCCCeeEcCCCC--CCcCCcccCHHHHHHHHHhhccccCCcccCc
Confidence 2332 39999999999999 999999999999999999997 899999999999876543 12233578999
Q ss_pred hHHHHHHHHHHHHcCCcEEEEeCCCcchHHHHhcC-----Ccc-eEEEecC
Q 005041 241 MTAKVNAAYCAACAGIPVVITSGFAMDSIIKVLEG-----KRV-GTLFHRD 285 (717)
Q Consensus 241 M~~Kv~aa~~a~~~gi~v~I~~g~~~~~l~~~~tg-----~~i-GT~i~a~ 285 (717)
|.+|+++|..++++|++++|+||+.|+.+.+++++ +.. ||++..+
T Consensus 233 M~~Kl~Aa~~a~~~gv~v~I~~g~~p~~l~~l~t~~~~~~~~~~~t~i~~~ 283 (286)
T 3d40_A 233 MHTKLDALVTCARRGAECFIMRGDPGSDLEFLTAPFSSWPAHVRSTRITTT 283 (286)
T ss_dssp HHHHHHHHHHHHHTTCEEEEEECCTTCCCGGGGSCGGGSCTTCCCEEEEC-
T ss_pred HHHHHHHHHHHHHCCCcEEEEeCCCCCcHHHHhcCcccCcccccceeeeec
Confidence 99999999999999999999999999999889998 665 9998765
No 56
>3ll9_A Isopentenyl phosphate kinase; mevalonate biosynthesis isoprenoid, transferase; HET: ADP; 2.15A {Methanothermobacter thermautotrophicusorganism_taxid}
Probab=100.00 E-value=1.1e-33 Score=293.88 Aligned_cols=254 Identities=17% Similarity=0.212 Sum_probs=174.4
Q ss_pred CCeEEEEeCCcccccCCC--c-ccHHHHHHHHHHHHHHHHCCCeEEEEecChhHhhHHHHhhhhccCCCcccccCccccc
Q 005041 16 VKRVVVKVGTAVVTRSDG--R-LALGRLGALLEQLKELNSQGFEIILVSSGAVGVGRQRLRYRKLVNSSLADLQKPQNEL 92 (717)
Q Consensus 16 ~~~iVvKiGGs~l~~~~~--~-~~~~~l~~l~~~Ia~l~~~G~~vviVhGGg~~~~~~~l~~~~~~~~~~~~l~~~~~~l 92 (717)
++++||||||+++++++. . ++.+.+.+++++|+.++ +.++|||||||+++...+ +. .+++++|..-+ ....
T Consensus 2 ~k~iVIKlGG~~l~~~~~~~~~~~~~~l~~l~~~i~~l~--~~~~vlVhGGG~~~~~~~-~~-~gi~~~~~~~~--g~~~ 75 (269)
T 3ll9_A 2 SHMIILKLGGSVITRKDSEEPAIDRDNLERIASEIGNAS--PSSLMIVHGAGSFGHPFA-GE-YRIGSEIENEE--DLRR 75 (269)
T ss_dssp -CCEEEEECHHHHEECCSSSCEECHHHHHHHHHHHHHHC--CSSEEEEECCGGGTHHHH-HH-HTTTSCCCSHH--HHHH
T ss_pred CCEEEEEEChhheecCccccccccHHHHHHHHHHHHHhc--CCCEEEEECCcHHHHHHH-HH-cCCCcccccCc--cccc
Confidence 578999999999998763 4 88888999999999886 589999999999866654 32 34444443100 0000
Q ss_pred hHHHHHHhch--HHHHHHHHHHhhcCCCCcceeEecccccCchhH-hhHHHHHHHHHHhCCCeEEecCCCeeeccCCCCC
Q 005041 93 DGKACAAVGQ--SSLMALYDTLFSQLDVTSSQLLVTDSDFRDEDF-RKQLYDTVQSLLDLRVIPIFNENDAVSTRKAPYE 169 (717)
Q Consensus 93 ~~~~~~a~G~--~~~~~~~~~~l~~~g~~~~~~~~~~~d~~~~~~-~~~~~~~i~~lL~~g~vPVv~g~d~v~~~~~~~~ 169 (717)
...++..... ..++..+...|..+|+++.++.-.+..+...+. ...+.+.++++|++|.|||++| |.+..
T Consensus 76 ~~~G~rvT~~~~~~ln~~l~~~L~~~G~~a~~l~g~~~~~~~~g~v~~v~~~~i~~lL~~g~ipVi~~-~~~~~------ 148 (269)
T 3ll9_A 76 RRFGFALTQNWVKKLNSHVCDALLAEGIPAVSMQPSAFIRAHAGRISHADISLIRSYLEEGMVPVVYG-DVVLD------ 148 (269)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTTCCEEECCGGGTEEEETTEEEEECCHHHHHHHHTTCEEEEEC-EEEEB------
T ss_pred ccchhhHHHHHHHHHHHHHHHHHHHCCCcEEEEcchHcCeEecCeeeeecHHHHHHHHHCCCEEEECC-CEEec------
Confidence 0011111110 124445678888999887765322221111111 1123578999999999999996 43332
Q ss_pred CC--CCee-ecchHHHHHHHhhcCCCEEEEecccCccccCCCc-cccccccccccccchhHHHhcCCCCCcccCChHHHH
Q 005041 170 DS--SGIF-WDNDSLAGLLALELKADLLVLLSDVEGLYSGPPS-EPNSKLIHTYIRAKHQAEITFGDKSRVGRGGMTAKV 245 (717)
Q Consensus 170 ~~--~~~~-~~sD~~A~~lA~~L~Ad~li~lTDV~GV~~~dP~-~p~a~~i~~it~~e~~~~~~~gs~~~~~tggM~~Kv 245 (717)
.. +..+ +|+|++|+++|.+|+||+|+|+|||||||++||+ +|++++|++++++|+.+++. ++.+.+++|||.+|+
T Consensus 149 ~~~~g~~~~~~~D~~Aa~lA~~l~Ad~li~ltdv~Gv~~~dp~~~~~a~~i~~i~~~e~~~~l~-~~~~~~~tgGM~~Kl 227 (269)
T 3ll9_A 149 SDRRLKFSVISGDQLINHFSLRLMPERVILGTDVDGVYTRNPKKHPDARLLDVIGSLDDLESLD-GTLNTDVTGGMVGKI 227 (269)
T ss_dssp SCTTTSEEEECHHHHHHHHHHHHCCSEEEEEESSSSCBSSCTTTCTTCCBCSBCCC--------------------SHHH
T ss_pred ccccCcceecchHHHHHHHHHHcCCCeEEEecCCCEEEcCCCCcCCcceEccccCHHHHHHHhc-ccCCCcCcCCcHHHH
Confidence 13 4444 9999999999999999999999999999999995 89999999999999976553 333457899999999
Q ss_pred HHHHHHHHcCCcEEEEeCCCcchHHHHhcCCcc-eEEEe
Q 005041 246 NAAYCAACAGIPVVITSGFAMDSIIKVLEGKRV-GTLFH 283 (717)
Q Consensus 246 ~aa~~a~~~gi~v~I~~g~~~~~l~~~~tg~~i-GT~i~ 283 (717)
++|..++++|++++|+||+.|+.+.++++|+.. ||.+.
T Consensus 228 ~aa~~a~~~Gv~v~I~~g~~~~~l~~~~~g~~~~GT~i~ 266 (269)
T 3ll9_A 228 RELLLLAEKGVESEIINAAVPGNIERALLGEEVRGTRIT 266 (269)
T ss_dssp HHHHHHHHTTCCEEEEESSSTTHHHHHHHTCCCSSEEC-
T ss_pred HHHHHHHhCCCeEEEEeCCCchHHHHHHCCCCCCcEEEE
Confidence 999999999999999999999999999999988 99876
No 57
>2rd5_A Acetylglutamate kinase-like protein; protein-protein complex, regulation of arginine biosynthesis nitrogen metabolism, kinase, transferase, transcription; HET: ARG ADP NLG ATP; 2.51A {Arabidopsis thaliana}
Probab=100.00 E-value=3.9e-33 Score=294.54 Aligned_cols=244 Identities=25% Similarity=0.334 Sum_probs=186.6
Q ss_pred CCeEEEEeCCcccccCCCcccHHHHHHHHHHHHHHHHCCCeEEEEecChhHhhHHHHhhhhccCCCccc-ccCcc-ccch
Q 005041 16 VKRVVVKVGTAVVTRSDGRLALGRLGALLEQLKELNSQGFEIILVSSGAVGVGRQRLRYRKLVNSSLAD-LQKPQ-NELD 93 (717)
Q Consensus 16 ~~~iVvKiGGs~l~~~~~~~~~~~l~~l~~~Ia~l~~~G~~vviVhGGg~~~~~~~l~~~~~~~~~~~~-l~~~~-~~l~ 93 (717)
++++|||||||+++++ +.+..++++|+.+++.|+++|||||||++++..+.. . +..++|.+ ++.+. ..+.
T Consensus 36 ~k~iVIKlGGs~l~~~------~~~~~~~~~i~~l~~~G~~vViVhGgG~~i~~~~~~-~-~~~~~~~~g~R~t~~~~l~ 107 (298)
T 2rd5_A 36 GKTIVVKYGGAAMTSP------ELKSSVVSDLVLLACVGLRPILVHGGGPDINRYLKQ-L-NIPAEFRDGLRVTDATTME 107 (298)
T ss_dssp TCEEEEEECTHHHHCH------HHHHHHHHHHHHHHHTTCEEEEEECCHHHHHHHHHH-T-TCCCCEETTEECBCHHHHH
T ss_pred CCEEEEEECchhhCCh------hHHHHHHHHHHHHHHCCCCEEEEECCcHHHHHHHHH-c-CCCccccCCcccCCHHHHH
Confidence 5789999999999974 347899999999999999999999999999876532 2 33333322 22221 1222
Q ss_pred HHHHHHhchHHHHHHHHHHhhcCCCCcc-------eeEeccc-----ccCchhHh-hHHHHHHHHHHhCCCeEEecCCCe
Q 005041 94 GKACAAVGQSSLMALYDTLFSQLDVTSS-------QLLVTDS-----DFRDEDFR-KQLYDTVQSLLDLRVIPIFNENDA 160 (717)
Q Consensus 94 ~~~~~a~G~~~~~~~~~~~l~~~g~~~~-------~~~~~~~-----d~~~~~~~-~~~~~~i~~lL~~g~vPVv~g~d~ 160 (717)
...+.+.|+.. ..+...|.++|+++. +++.+.. |+...+.. ..+.+.++++|++|.|||+++
T Consensus 108 ~~~~~~~G~~n--~~l~~~l~~~g~~a~~l~~~~~~~l~~~~~~~~~d~g~~g~v~~v~~~~i~~lL~~g~IpVi~~--- 182 (298)
T 2rd5_A 108 IVSMVLVGKVN--KNLVSLINAAGATAVGLSGHDGRLLTARPVPNSAQLGFVGEVARVDPSVLRPLVDYGYIPVIAS--- 182 (298)
T ss_dssp HHHHHHHHTHH--HHHHHHHHHTTSCEEEEETTGGGCEEEEECTTHHHHBSEEEEEEECGGGHHHHHHTTCEEEEES---
T ss_pred HHHHHHhchHH--HHHHHHHHhCCCCccccChHHCCEEEEEeCCccccCCcceEEEEECHHHHHHHHhCCCEEEEcC---
Confidence 22333467653 356788888887643 3333322 33321111 123688999999999999985
Q ss_pred eeccCCCCCCCCCee-ecchHHHHHHHhhcCCCEEEEecccCccccCCCccccccccccccccchhHHHhcCCCCCcccC
Q 005041 161 VSTRKAPYEDSSGIF-WDNDSLAGLLALELKADLLVLLSDVEGLYSGPPSEPNSKLIHTYIRAKHQAEITFGDKSRVGRG 239 (717)
Q Consensus 161 v~~~~~~~~~~~~~~-~~sD~~A~~lA~~L~Ad~li~lTDV~GV~~~dP~~p~a~~i~~it~~e~~~~~~~gs~~~~~tg 239 (717)
+.. +..|..+ +|+|++|+.+|.+|+||+|+|+|||||||++||+ | +++|++|+++|+.+++..+ .++|
T Consensus 183 v~~-----~~~G~~~~i~~D~~Aa~lA~~l~Ad~LiilTdVdGVy~~dp~-~-a~~i~~is~~e~~~~~~~g----~~~g 251 (298)
T 2rd5_A 183 VAA-----DDSGQAYNINADTVAGELAAALGAEKLILLTDVAGILENKED-P-SSLIKEIDIKGVKKMIEDG----KVAG 251 (298)
T ss_dssp EEE-----CTTSCEEEECHHHHHHHHHHHHTCSEEEEEESSSSEESSSSC-T-TSEECEEEHHHHHHHHHTT----SSCT
T ss_pred eeE-----CCCCCEEEECHHHHHHHHHHHcCCCEEEEEeCCcCeecCCCC-C-CCCcccCCHHHHHHHHHCC----CCCC
Confidence 222 2245566 7999999999999999999999999999999996 4 8999999999998876643 6799
Q ss_pred ChHHHHHHHHHHHHcCCc-EEEEeCCCcchH-HHHhcCCcceEEEe
Q 005041 240 GMTAKVNAAYCAACAGIP-VVITSGFAMDSI-IKVLEGKRVGTLFH 283 (717)
Q Consensus 240 gM~~Kv~aa~~a~~~gi~-v~I~~g~~~~~l-~~~~tg~~iGT~i~ 283 (717)
||.||+++|..++++|++ ++|+||+.|+.+ .++++++..||.+.
T Consensus 252 GM~~Kl~aa~~a~~~gv~~v~I~~g~~~~~ll~~l~~~~~~GT~i~ 297 (298)
T 2rd5_A 252 GMIPKVKCCIRSLAQGVKTASIIDGRRQHSLLHEIMSDEGAGTMIT 297 (298)
T ss_dssp THHHHHHHHHHHHHTTCSEEEEEETTSTTHHHHHHHSSSCSEEEEE
T ss_pred chHHHHHHHHHHHHcCCCeEEEecCCCCchHHHHHhcCCCCceEEe
Confidence 999999999999999999 999999999999 89999988999885
No 58
>2ap9_A NAG kinase, acetylglutamate kinase, AGK; structural genomics, protein structure initiative, NYSGXRC, PSI; 2.80A {Mycobacterium tuberculosis} SCOP: c.73.1.2
Probab=100.00 E-value=8.8e-33 Score=292.14 Aligned_cols=244 Identities=20% Similarity=0.238 Sum_probs=185.3
Q ss_pred CCeEEEEeCCcccccCCCcccHHHHHHHHHHHHHHHHCCCeEEEEecChhHhhHHHHhhhhccCCCccc-ccCccc-cch
Q 005041 16 VKRVVVKVGTAVVTRSDGRLALGRLGALLEQLKELNSQGFEIILVSSGAVGVGRQRLRYRKLVNSSLAD-LQKPQN-ELD 93 (717)
Q Consensus 16 ~~~iVvKiGGs~l~~~~~~~~~~~l~~l~~~Ia~l~~~G~~vviVhGGg~~~~~~~l~~~~~~~~~~~~-l~~~~~-~l~ 93 (717)
++++||||||+++++++ .+..++++|+.+++.|+++|||||||++++..+.. . +..+.|.+ ++.+.. .+.
T Consensus 25 ~k~iViKlGGs~l~~~~------~~~~~~~~i~~l~~~G~~vViVhGgG~~i~~~~~~-~-~~~~~~~~g~R~t~~~~l~ 96 (299)
T 2ap9_A 25 GKVVVVKYGGNAMTDDT------LRRAFAADMAFLRNCGIHPVVVHGGGPQITAMLRR-L-GIEGDFKGGFRVTTPEVLD 96 (299)
T ss_dssp TCEEEEEECTHHHHSHH------HHHHHHHHHHHHHTTTCEEEEEECCSHHHHHHHHH-H-TCCCCCSSSSCCBCHHHHH
T ss_pred CCeEEEEECchhhCCch------HHHHHHHHHHHHHHCCCcEEEEECCcHHHHHHHHH-c-CCcccccCCcccCCHHHHH
Confidence 47899999999999752 47899999999999999999999999999876532 2 33333332 232221 122
Q ss_pred HHHHHHhchHHHHHHHHHHhhcCCCCcceeEeccccc-----------------CchhH-hhHHHHHHHHHHhCCCeEEe
Q 005041 94 GKACAAVGQSSLMALYDTLFSQLDVTSSQLLVTDSDF-----------------RDEDF-RKQLYDTVQSLLDLRVIPIF 155 (717)
Q Consensus 94 ~~~~~a~G~~~~~~~~~~~l~~~g~~~~~~~~~~~d~-----------------~~~~~-~~~~~~~i~~lL~~g~vPVv 155 (717)
...+.+.|+ ++..+...|..+|+++..+...+.++ ...+. ...+.+.++++|++|.|||+
T Consensus 97 ~~~~~~~G~--l~~~l~~~L~~~g~~av~lt~~d~~~~~~~~~~~~~~~~~~d~g~~g~v~~v~~~~i~~lL~~g~IpVv 174 (299)
T 2ap9_A 97 VARMVLFGQ--VGRELVNLINAHGPYAVGITGEDAQLFTAVRRSVTVDGVATDIGLVGDVDQVNTAAMLDLVAAGRIPVV 174 (299)
T ss_dssp HHHHHHHHT--HHHHHHHHHTTSSSCEEEEETTGGGCEEEEECCBCSSSCCBCCBSEEEEEEECHHHHHHHHHTTCEEEE
T ss_pred HHHHHHhhH--HHHHHHHHHHhCCCCceEechhHCCEEEEEecccccccccCCCCcceeEEEecHHHHHHHHhCCCeEEE
Confidence 223334555 44557889999998764321111111 00111 01347899999999999999
Q ss_pred cCCCeeeccCCCCCCCCCee-ecchHHHHHHHhhcCCCEEEEecccCccccCCCccccccccccccccchhHHHhcCCCC
Q 005041 156 NENDAVSTRKAPYEDSSGIF-WDNDSLAGLLALELKADLLVLLSDVEGLYSGPPSEPNSKLIHTYIRAKHQAEITFGDKS 234 (717)
Q Consensus 156 ~g~d~v~~~~~~~~~~~~~~-~~sD~~A~~lA~~L~Ad~li~lTDV~GV~~~dP~~p~a~~i~~it~~e~~~~~~~gs~~ 234 (717)
++ +.. +..|..+ +|+|++|+.+|.+|+||+|+|+|||||||++||+ ++++|++|+++|+.+++.
T Consensus 175 ~~---v~~-----~~~G~~~~l~~D~~Aa~lA~~l~Ad~liilTDVdGV~~~dP~--~~~~i~~is~~e~~~l~~----- 239 (299)
T 2ap9_A 175 ST---LAP-----DADGVVHNINADTAAAAVAEALGAEKLLMLTDIDGLYTRWPD--RDSLVSEIDTGTLAQLLP----- 239 (299)
T ss_dssp ES---EEE-----CTTCCEEEECHHHHHHHHHHHTTCSEEEEEESSSSEETTTTC--TTCEESEEEHHHHHHHGG-----
T ss_pred CC---eeE-----CCCCCEEEECHHHHHHHHHHHcCCCEEEEEeCChhhhcCCCC--CCcChhhcCHHHHHHHHH-----
Confidence 85 222 2245556 7999999999999999999999999999999996 478999999999988654
Q ss_pred CcccCChHHHHHHHHHHHHcCCc-EEEEeCCCcchH-HHHhcCCcceEEEecC
Q 005041 235 RVGRGGMTAKVNAAYCAACAGIP-VVITSGFAMDSI-IKVLEGKRVGTLFHRD 285 (717)
Q Consensus 235 ~~~tggM~~Kv~aa~~a~~~gi~-v~I~~g~~~~~l-~~~~tg~~iGT~i~a~ 285 (717)
+++|||.||+++|..++++|++ ++|+||+.|+++ .++++++..||++.++
T Consensus 240 -~~~ggM~~Kl~aa~~a~~~gv~~v~I~~g~~p~~ll~~l~~~~~~GT~i~~~ 291 (299)
T 2ap9_A 240 -TLELGMVPKVEACLRAVIGGVPSAHIIDGRVTHCVLVELFTDAGTGTKVVRG 291 (299)
T ss_dssp -GSCTTTHHHHHHHHHHHHHTCSEEEEEETTSTTHHHHHHHSCCCCSEEEECC
T ss_pred -hhcCchHHHHHHHHHHHHcCCCEEEEecCCCCcHHHHHHhcCCCCcEEEecC
Confidence 6699999999999999999999 999999999997 8999999999999875
No 59
>2v5h_A Acetylglutamate kinase; amino-acid biosynthesis, transcription regulation, transfera cyanobacteria, transcription; HET: NLG; 2.75A {Synechococcus elongatus} PDB: 2jj4_A*
Probab=100.00 E-value=1.1e-32 Score=293.15 Aligned_cols=246 Identities=20% Similarity=0.300 Sum_probs=188.5
Q ss_pred CCeEEEEeCCcccccCCCcccHHHHHHHHHHHHHHHHCCCeEEEEecChhHhhHHHHhhhhccCCCccc-ccCcc-ccch
Q 005041 16 VKRVVVKVGTAVVTRSDGRLALGRLGALLEQLKELNSQGFEIILVSSGAVGVGRQRLRYRKLVNSSLAD-LQKPQ-NELD 93 (717)
Q Consensus 16 ~~~iVvKiGGs~l~~~~~~~~~~~l~~l~~~Ia~l~~~G~~vviVhGGg~~~~~~~l~~~~~~~~~~~~-l~~~~-~~l~ 93 (717)
++++||||||++++++ +.+..++++|+.|++.|+++|||||||++++..+.+ .+..+.|.+ ++.+. ..+.
T Consensus 49 ~k~iVIKlGGs~l~~~------~~~~~l~~~i~~l~~~G~~vVlVhGgG~~i~~~~~~--~g~~~~~~~g~Rvt~~~~l~ 120 (321)
T 2v5h_A 49 GRTVVVKYGGAAMKQE------ELKEAVMRDIVFLACVGMRPVVVHGGGPEINAWLGR--VGIEPQFHNGLRVTDADTME 120 (321)
T ss_dssp TCEEEEEECTHHHHSH------HHHHHHHHHHHHHHHTTCEEEEEECCHHHHHHHHHH--TTCCCCBSSSSBCBCHHHHH
T ss_pred CCeEEEEECchhhCCc------hHHHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHH--cCCCccccCCcccCCHHHHH
Confidence 4789999999999974 347899999999999999999999999999876532 233333332 22221 1222
Q ss_pred HHHHHHhchHHHHHHHHHHhhcCCCCcc-------eeEeccc----ccCchhHhh-HHHHHHHHHHhCCCeEEecCCCee
Q 005041 94 GKACAAVGQSSLMALYDTLFSQLDVTSS-------QLLVTDS----DFRDEDFRK-QLYDTVQSLLDLRVIPIFNENDAV 161 (717)
Q Consensus 94 ~~~~~a~G~~~~~~~~~~~l~~~g~~~~-------~~~~~~~----d~~~~~~~~-~~~~~i~~lL~~g~vPVv~g~d~v 161 (717)
...+.+.|+... .+...|..+|+++. +++.+.. |+...+.+. .+.+.|+++|++|.|||+++ +
T Consensus 121 ~~~~~~~G~in~--~l~~~L~~~g~~a~gl~~~~a~~l~a~~~~~~d~g~~g~v~~v~~~~i~~lL~~g~IpVi~~---v 195 (321)
T 2v5h_A 121 VVEMVLVGRVNK--DIVSRINTTGGRAVGFCGTDGRLVLARPHDQEGIGFVGEVNSVNSEVIEPLLERGYIPVISS---V 195 (321)
T ss_dssp HHHHHHHHTHHH--HHHHHHHHHTCCEEEECTTGGGSEEEEECSSCSSBSBEEEEEECGGGTHHHHHTTCEEEEES---E
T ss_pred HHHHHHhChHHH--HHHHHHHhCCCCeeeeChhhccEEEeecCCCccccccceeEEecHHHHHHHHHCCCeEEEeC---c
Confidence 333444677643 45677777776542 3444432 554332222 23688999999999999984 3
Q ss_pred eccCCCCCCCCCee-ecchHHHHHHHhhcCCCEEEEecccCccccCCCccccccccccccccchhHHHhcCCCCCcccCC
Q 005041 162 STRKAPYEDSSGIF-WDNDSLAGLLALELKADLLVLLSDVEGLYSGPPSEPNSKLIHTYIRAKHQAEITFGDKSRVGRGG 240 (717)
Q Consensus 162 ~~~~~~~~~~~~~~-~~sD~~A~~lA~~L~Ad~li~lTDV~GV~~~dP~~p~a~~i~~it~~e~~~~~~~gs~~~~~tgg 240 (717)
.. +..|..+ +|+|++|+.+|.+|+||+|+|+|||||||++||+ ++++|++|+++|+.+++..+ .++||
T Consensus 196 ~~-----~~~G~~~~i~~D~~Aa~lA~~l~Ad~LiilTDVdGVy~~dp~--~a~~i~~is~~e~~~l~~~g----~~~gG 264 (321)
T 2v5h_A 196 AA-----DENGQSFNINADTVAGEIAAALNAEKLILLTDTRGILEDPKR--PESLIPRLNIPQSRELIAQG----IVGGG 264 (321)
T ss_dssp EE-----CTTSCEEECCHHHHHHHHHHHTTCSEEEEEESSSSCBSSTTC--TTCBCCEEEHHHHHHHHHTT----SSCTT
T ss_pred eE-----CCCCCEEEeCHHHHHHHHHHHcCCCEEEEeeCCCceEcCCCC--CCeeeeEEcHHHHHHHHhCC----CCcCc
Confidence 32 2245567 5999999999999999999999999999999996 58999999999998876543 67999
Q ss_pred hHHHHHHHHHHHHcCCc-EEEEeCCCcchH-HHHhcCCcceEEEecC
Q 005041 241 MTAKVNAAYCAACAGIP-VVITSGFAMDSI-IKVLEGKRVGTLFHRD 285 (717)
Q Consensus 241 M~~Kv~aa~~a~~~gi~-v~I~~g~~~~~l-~~~~tg~~iGT~i~a~ 285 (717)
|.||+++|..|+++|++ ++|+||+.++.+ .++++++..||++...
T Consensus 265 M~~Kl~Aa~~a~~~gv~~v~I~~g~~~~~ll~~l~~~~~~GT~I~~~ 311 (321)
T 2v5h_A 265 MIPKVDCCIRSLAQGVRAAHIIDGRIPHALLLEIFTDAGIGTMIVGS 311 (321)
T ss_dssp HHHHHHHHHHHHHTTCSEEEEEETTSTTHHHHHHHCCCCSEEEEECC
T ss_pred HHHHHHHHHHHHHcCCCEEEEEeCCCCchHHHHHhcCCCCceEEECC
Confidence 99999999999999999 999999999998 8899998899999865
No 60
>2e9y_A Carbamate kinase; transferase, structural genomics, NPPSFA, national project O structural and functional analyses; 1.80A {Aeropyrum pernix}
Probab=100.00 E-value=2.4e-32 Score=290.42 Aligned_cols=255 Identities=17% Similarity=0.154 Sum_probs=189.2
Q ss_pred hccCCeEEEEeCCcccccCCC--c--ccHHHHHHHHHHHHHHHHCCCeEEEEecChhHhhHHHHhhhhccCCCcccccCc
Q 005041 13 LKNVKRVVVKVGTAVVTRSDG--R--LALGRLGALLEQLKELNSQGFEIILVSSGAVGVGRQRLRYRKLVNSSLADLQKP 88 (717)
Q Consensus 13 ~~~~~~iVvKiGGs~l~~~~~--~--~~~~~l~~l~~~Ia~l~~~G~~vviVhGGg~~~~~~~l~~~~~~~~~~~~l~~~ 88 (717)
|.+++++||||||+++.+++. + ++.+++..++++|+.|++.|+++|||||||+++++.+.. . +..++|.+ ..
T Consensus 1 ~~~~~~iVIKlGGs~l~~~~~~~~~~~~~~~~~~~a~~I~~l~~~G~~vVlVhGgg~~~~~~~~~-~-~~~~~~t~--~~ 76 (316)
T 2e9y_A 1 MDSGRLAVIALGGNAIAGPGMDVSVESQTAAVKRASSIIADVLADGWRSVITHGNGPQVGYLSEA-F-EALPPERP--RQ 76 (316)
T ss_dssp ---CCEEEEECCHHHHSBTTTBCCHHHHHHHHHHHHHHHHHHHHTTCEEEEECCCHHHHHHHHHH-H-HTSCTTSC--CC
T ss_pred CCCCCEEEEEEChHHhcCCCCCcchhhHHHHHHHHHHHHHHHHHCCCEEEEEcCCcHHHhHHHHH-c-CCCCCCCC--HH
Confidence 456789999999999995542 2 234789999999999999999999999999999975432 2 33333321 11
Q ss_pred cccchHHHHHHhchH--HHHHHHHHHhhcCCCC------cceeEecccc------------cCc---hh-----H-h---
Q 005041 89 QNELDGKACAAVGQS--SLMALYDTLFSQLDVT------SSQLLVTDSD------------FRD---ED-----F-R--- 136 (717)
Q Consensus 89 ~~~l~~~~~~a~G~~--~~~~~~~~~l~~~g~~------~~~~~~~~~d------------~~~---~~-----~-~--- 136 (717)
.+....+.+.|+. .++.++...|.++|++ .+|+.++..| +.+ .. . +
T Consensus 77 --~l~~~~~~~~G~i~~~l~~~l~~~l~~~g~~a~~~~v~~qv~l~~~d~~f~~~~k~~g~~~~~~~a~~~~~~~g~~~~ 154 (316)
T 2e9y_A 77 --PLYIATAMTQAWIGLLLKHSLEEELRRRGLNVLVPVVISRVLVDVSDPSFNNPSKPVGPIYGREEAEELSRRYGWVFK 154 (316)
T ss_dssp --CHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCCCCEECCEEEECTTCGGGTSCCEEEEEEECHHHHHHHHHHHCCEEE
T ss_pred --HHHHHHHHHHhHHHHHHHHHHHHHHHhcCCCccccceeeEEEeccccccccccccccccccchhhhhhhhhhcceeee
Confidence 1222233445554 3556788899999987 3566555333 110 00 0 0
Q ss_pred ------------------hHHHHHHHHHHhCCCeEEecCCCeeeccCCCCCCCCCe----e-ecchHHHHHHHhhcCCCE
Q 005041 137 ------------------KQLYDTVQSLLDLRVIPIFNENDAVSTRKAPYEDSSGI----F-WDNDSLAGLLALELKADL 193 (717)
Q Consensus 137 ------------------~~~~~~i~~lL~~g~vPVv~g~d~v~~~~~~~~~~~~~----~-~~sD~~A~~lA~~L~Ad~ 193 (717)
..+.+.|+++|++|.|||++|++.++.. .+..+.. + +|+|++|+.+|.+|+||+
T Consensus 155 ~~~g~g~r~vv~sp~~i~~v~~~~i~~lL~~g~IpI~~g~~g~pv~---~~~~g~~~g~~~~id~D~~Aa~lA~~l~Ad~ 231 (316)
T 2e9y_A 155 RDPRGGFRRVVPSPRPVSIVDRDLIAEASAESPAVVALGGGGVPVV---ERPGGVLEPVEAVVDKDLASSLLATQLNADL 231 (316)
T ss_dssp ECTTSSEEEEECCCCEEEETTHHHHHHHHHHCSEEEECGGGCEEEE---ECTTSCEEECSCCCCHHHHHHHHHHHTTCSE
T ss_pred ccccccceecccCCCcceeehHHHHHHHHHCCCEEEEECCCCCCee---ECCCCCeecceeeeCHHHHHHHHHHHcCCCE
Confidence 0357899999999999999988755431 1113312 2 599999999999999999
Q ss_pred EEEecccCccccCCCccccccccccccccchhHHHhcCCCCCcccCChHHHHHHHHHHHHcCC-cEEEEeCCCcchHHHH
Q 005041 194 LVLLSDVEGLYSGPPSEPNSKLIHTYIRAKHQAEITFGDKSRVGRGGMTAKVNAAYCAACAGI-PVVITSGFAMDSIIKV 272 (717)
Q Consensus 194 li~lTDV~GV~~~dP~~p~a~~i~~it~~e~~~~~~~gs~~~~~tggM~~Kv~aa~~a~~~gi-~v~I~~g~~~~~l~~~ 272 (717)
|+|+|||||||+ ||++|++++|++|+++|+.+++..+ ...+|||.+|+++|..++++|+ +++|+| ++.+.+.
T Consensus 232 LiilTdVdGVy~-dp~~p~a~~i~~i~~~e~~~~~~~g---~~~~GgM~~Kv~aa~~a~~~gv~~v~I~~---~~~l~~~ 304 (316)
T 2e9y_A 232 LVILTDVPGVAV-NYGREGERWLRRAAASELKKYLREG---HFPPGSMGPKVEAAISFVERTGKPAVIGS---LEEARQV 304 (316)
T ss_dssp EEEEESSSSCEE-TTTSTTCEECSEEEHHHHHHHHHTT---CSCTTTHHHHHHHHHHHHHHHCSCEEEEE---STTHHHH
T ss_pred EEEEeCchHhhC-CCCCCCCcCCcEEcHHHHHHHHhcC---CCCCCCHHHHHHHHHHHHHcCCCeEEECc---HHHHHHH
Confidence 999999999999 6778999999999999998876543 3668999999999999999999 599998 5678888
Q ss_pred hcCCcceEEEec
Q 005041 273 LEGKRVGTLFHR 284 (717)
Q Consensus 273 ~tg~~iGT~i~a 284 (717)
+++ ..||++.+
T Consensus 305 l~g-~~GT~i~~ 315 (316)
T 2e9y_A 305 LSL-QAGTVVML 315 (316)
T ss_dssp HTT-SSSEEEEC
T ss_pred HcC-CCCeEEec
Confidence 888 78998864
No 61
>3l86_A Acetylglutamate kinase; ARGB, amino-acid biosynthesis, arginine biosynthesi binding, nucleotide-binding, transferase; HET: ADP NLG; 2.06A {Streptococcus mutans}
Probab=100.00 E-value=3.6e-32 Score=281.96 Aligned_cols=216 Identities=22% Similarity=0.350 Sum_probs=169.3
Q ss_pred CeEEEEeCCcccccCCCcccHHHHHHHHHHHHHHHHCCCeEEEEecChhHhhHHHHhhhhccCCCccc-ccCccccchHH
Q 005041 17 KRVVVKVGTAVVTRSDGRLALGRLGALLEQLKELNSQGFEIILVSSGAVGVGRQRLRYRKLVNSSLAD-LQKPQNELDGK 95 (717)
Q Consensus 17 ~~iVvKiGGs~l~~~~~~~~~~~l~~l~~~Ia~l~~~G~~vviVhGGg~~~~~~~l~~~~~~~~~~~~-l~~~~~~l~~~ 95 (717)
+++||||||+++++. +.+++++|+.|++.|+++||||||+++++..+.+ .+++++|.+ ++.++ ++
T Consensus 37 k~iVIKiGGs~l~~~--------~~~l~~dIa~L~~~G~~vVlVhgGg~~i~~~l~~--lg~~~~~~~G~Rvtd----~~ 102 (279)
T 3l86_A 37 DIIVIKIGGVASQQL--------SGDFLSQIKNWQDAGKQLVIVHGGGFAINKLMEE--NQVPVKKINGLRVTS----KD 102 (279)
T ss_dssp CEEEEEECTTGGGSC--------CHHHHHHHHHHHHTTCEEEEEECCHHHHHHHHHH--TTCCCCEETTEECBC----HH
T ss_pred ceEEEEEChHHHHhH--------HHHHHHHHHHHHhCCCcEEEEECCHHHHHHHHHH--cCCCCccCCCcccCc----HH
Confidence 799999999999874 4789999999999999999999999999987643 245555554 22322 22
Q ss_pred HHHHhchHHHH----HHHHHHhhcCCCCccee------EecccccCchhHhh-------HHHHHHHHHHhCCCeEEecCC
Q 005041 96 ACAAVGQSSLM----ALYDTLFSQLDVTSSQL------LVTDSDFRDEDFRK-------QLYDTVQSLLDLRVIPIFNEN 158 (717)
Q Consensus 96 ~~~a~G~~~~~----~~~~~~l~~~g~~~~~~------~~~~~d~~~~~~~~-------~~~~~i~~lL~~g~vPVv~g~ 158 (717)
++..+ +..++ ..+...|..+|+++.++ +++..++ +...|+ .+.+.|+.+|++|+|||+++
T Consensus 103 ~l~~v-~~~l~G~ln~~i~~~L~~~G~~a~~l~g~dg~llta~~~-~~~d~g~vG~i~~v~~~~i~~lL~~g~IPVi~~- 179 (279)
T 3l86_A 103 DMVLV-SHALLDLVGKNLQEKLRQAGVSCQQLKSDIKHVVAADYL-DKDTYGYVGDVTHINKRVIEEFLENRQIPILAS- 179 (279)
T ss_dssp HHHHH-HHHHHHTTHHHHHHHHHHTTCCEEECSGGGGGTEEEEES-CHHHHBSBEEEEEECHHHHHHHHHTTCEEEEES-
T ss_pred HHHHH-HHHHHHHHHHHHHHHHHhCCCCEEEEecCcCCEEEeecc-CccccCcccccchhhHHHHHHHHhCCcEEEECC-
Confidence 33333 33233 46778999999998887 4554433 222232 25799999999999999996
Q ss_pred CeeeccCCCCCCCCCee-ecchHHHHHHHhhcCCCEEEEecccCccccCCCccccccccccccccchhHHHhcCCCCCcc
Q 005041 159 DAVSTRKAPYEDSSGIF-WDNDSLAGLLALELKADLLVLLSDVEGLYSGPPSEPNSKLIHTYIRAKHQAEITFGDKSRVG 237 (717)
Q Consensus 159 d~v~~~~~~~~~~~~~~-~~sD~~A~~lA~~L~Ad~li~lTDV~GV~~~dP~~p~a~~i~~it~~e~~~~~~~gs~~~~~ 237 (717)
+.. +..+..+ +|+|++|+++|.+|+||+|+|+|||||||++ +++|++|+++|+.+++..+ .+
T Consensus 180 --v~~-----~~~G~~~~i~~D~~Aa~lA~~L~Ad~LiilTDVdGV~~d------~~~I~~i~~~e~~~l~~~~----~~ 242 (279)
T 3l86_A 180 --LGY-----SKEGDMLNINADYLATAVAVALAADKLILMTNVKGVLEN------GAVLEKITSHQVQEKIDTA----VI 242 (279)
T ss_dssp --EEE-----CTTSCEEECCHHHHHHHHHHHTTCSEEEEECSSSSCEET------TEECCEEEGGGSHHHHHTT----SS
T ss_pred --cEE-----CCCCCEeecCHHHHHHHHHHHcCCCEEEEEeCCCccccC------CEehhhccHHHHHHHHhCC----CC
Confidence 222 2245566 7999999999999999999999999999963 7899999999999877643 68
Q ss_pred cCChHHHHHHHHHHHHcCCc-EEEEeCCCc
Q 005041 238 RGGMTAKVNAAYCAACAGIP-VVITSGFAM 266 (717)
Q Consensus 238 tggM~~Kv~aa~~a~~~gi~-v~I~~g~~~ 266 (717)
+|||.||+++|..|+++|++ ++|+|++..
T Consensus 243 tGGM~~Kl~aa~~a~~~Gv~~v~I~~~~~~ 272 (279)
T 3l86_A 243 TAGMIPKIESAAKTVAAGVGQVLIGDNLLT 272 (279)
T ss_dssp CTTHHHHHHHHHHHHHTTCSEEEEESSSSC
T ss_pred cCcHHHHHHHHHHHHHcCCCEEEEeccCCC
Confidence 99999999999999999999 999998743
No 62
>3ll5_A Gamma-glutamyl kinase related protein; alternate mevalonate pathway, isopentenyl phsophate kinase, beta-alpha sandwich fold; HET: MSE ADP IPE ATP IP8; 1.99A {Thermoplasma acidophilum} PDB: 3lkk_A*
Probab=99.98 E-value=1.9e-32 Score=281.58 Aligned_cols=239 Identities=15% Similarity=0.193 Sum_probs=168.6
Q ss_pred CCeEEEEeCCcccccCC--CcccHHHHHHHHHHHHHHHHCCCeEE-EEecChhHhhHHHHhhhhccCCCcccccCccccc
Q 005041 16 VKRVVVKVGTAVVTRSD--GRLALGRLGALLEQLKELNSQGFEII-LVSSGAVGVGRQRLRYRKLVNSSLADLQKPQNEL 92 (717)
Q Consensus 16 ~~~iVvKiGGs~l~~~~--~~~~~~~l~~l~~~Ia~l~~~G~~vv-iVhGGg~~~~~~~l~~~~~~~~~~~~l~~~~~~l 92 (717)
++++||||||+++++++ ..++.+.+.+++++|+. |+++| ||||||+++.. +++. .++++.|.+.+...|..
T Consensus 3 ~k~iViKiGG~~l~~~~~~~~l~~~~l~~l~~~i~~----G~~vv~lVhGGG~~~~~-~~~~-~gi~~~~~~~d~~gl~~ 76 (249)
T 3ll5_A 3 FTMMILKIGGSVITDKSAYRTARTYAIRSIVKVLSG----IEDLVCVVHGGGSFGHI-KAME-FGLPGPKNPRSSIGYSI 76 (249)
T ss_dssp -CCEEEEECHHHHBCTTSTTCBCHHHHHHHHHHHHT----CTTEEEEEECCGGGTHH-HHHH-HTCSEECCHHHHHHHHH
T ss_pred ceEEEEEECccEEecCcccccchHHHHHHHHHHHhc----CCceEEEEECccHHHHH-HHHH-hCCCcCCCccccccHHH
Confidence 57899999999999864 25787889999999985 99999 99999886444 4332 24444443211111111
Q ss_pred hHHHHHHhchHHHHHHHHHHhhcCCCCcceeEecccccCchhHhhHHHHHHHHHHhCCCeEEecCCCeeeccCCCCCCCC
Q 005041 93 DGKACAAVGQSSLMALYDTLFSQLDVTSSQLLVTDSDFRDEDFRKQLYDTVQSLLDLRVIPIFNENDAVSTRKAPYEDSS 172 (717)
Q Consensus 93 ~~~~~~a~G~~~~~~~~~~~l~~~g~~~~~~~~~~~d~~~~~~~~~~~~~i~~lL~~g~vPVv~g~d~v~~~~~~~~~~~ 172 (717)
.... +..++..+...|..+|+++.++.-.+..+ .+.+ +.+.++++|++|.|||++| +.+... ++
T Consensus 77 t~~~-----~~~ln~~~v~~l~~~G~~a~~l~~~~~~~--~g~v--~~~~i~~ll~~g~ipVi~~-~~~~~~------~~ 140 (249)
T 3ll5_A 77 VHRD-----MENLDLMVIDAMIEMGMRPISVPISALRY--DGRF--DYTPLIRYIDAGFVPVSYG-DVYIKD------EH 140 (249)
T ss_dssp HHHH-----HHHHHHHHHHHHHHTTCCEEECCGGGSCB--SSSB--CCHHHHHHHHTTCEEEEEC-EEEEEE------TT
T ss_pred HHHH-----HHHHHHHHHHHHHHCCCcEEEEcHHHccc--ccEE--cHHHHHHHHHCCCEEEECC-CEEEcC------CC
Confidence 1111 12444555678889999887653222222 2223 4689999999999999996 544431 22
Q ss_pred Ce-eecchHHHHHHHhhcCCCEEEEecccCccccCCC-ccccccccccccccchhHHHhcCCCCCcccCChHHHHHHHHH
Q 005041 173 GI-FWDNDSLAGLLALELKADLLVLLSDVEGLYSGPP-SEPNSKLIHTYIRAKHQAEITFGDKSRVGRGGMTAKVNAAYC 250 (717)
Q Consensus 173 ~~-~~~sD~~A~~lA~~L~Ad~li~lTDV~GV~~~dP-~~p~a~~i~~it~~e~~~~~~~gs~~~~~tggM~~Kv~aa~~ 250 (717)
.. ++|+|++|+.+|.+|+||+|+|+|||||||++|| .+|++++|++++ +++.. ...+.+++|||.||+++|..
T Consensus 141 ~~~~~~~D~~Aa~lA~~l~Ad~li~ltdvdGv~~~dp~~~~~a~~i~~i~-~~~~~----~~~~~~~tGgM~~Kl~aA~~ 215 (249)
T 3ll5_A 141 SYGIYSGDDIMADMAELLKPDVAVFLTDVDGIYSKDPKRNPDAVLLRDID-TNITF----DRVQNDVTGGIGKKFESMVK 215 (249)
T ss_dssp EEEEECHHHHHHHHHHHHCCSEEEEEESSSSCBSSCTTTCTTCCBCCEEC-CCC-----------------HHHHHHHHH
T ss_pred ceeeecHHHHHHHHHHhcCCCEEEEEeCCCccCCCCCCCCCCcEEHHHHH-HHHhc----ccCCCeeECCHHHHHHHHHH
Confidence 23 4999999999999999999999999999999999 499999999994 33322 22234789999999999999
Q ss_pred H-HHcCCcEEEEeCCCcchHHHHhcCCcc-eEEE
Q 005041 251 A-ACAGIPVVITSGFAMDSIIKVLEGKRV-GTLF 282 (717)
Q Consensus 251 a-~~~gi~v~I~~g~~~~~l~~~~tg~~i-GT~i 282 (717)
+ +++|++++|+||+.++.+.. +.|+.. ||.+
T Consensus 216 a~~~~Gv~v~I~~g~~~~~l~~-l~g~~~~GT~i 248 (249)
T 3ll5_A 216 MKSSVKNGVYLINGNHPERIGD-IGKESFIGTVI 248 (249)
T ss_dssp HHTTCTTCEEEEETTSGGGGGG-TTSTTCCSEEE
T ss_pred HHHhcCCEEEEEeCCChhHHHH-hCCCCCCCEEe
Confidence 9 89999999999999999977 888887 9986
No 63
>2bty_A Acetylglutamate kinase; N-acetyl-L-glutamate kinase, amino acid kinase, phosphoryl group transfer, arginine metabolism, transferase; HET: ARG NLG; 2.75A {Thermotoga maritima} SCOP: c.73.1.2
Probab=99.98 E-value=1.3e-31 Score=281.10 Aligned_cols=242 Identities=21% Similarity=0.291 Sum_probs=184.4
Q ss_pred CCeEEEEeCCcccccCCCcccHHHHHHHHHHHHHHHHCCCeEEEEecChhHhhHHHHhhhhccCCCccc-ccCcc-ccch
Q 005041 16 VKRVVVKVGTAVVTRSDGRLALGRLGALLEQLKELNSQGFEIILVSSGAVGVGRQRLRYRKLVNSSLAD-LQKPQ-NELD 93 (717)
Q Consensus 16 ~~~iVvKiGGs~l~~~~~~~~~~~l~~l~~~Ia~l~~~G~~vviVhGGg~~~~~~~l~~~~~~~~~~~~-l~~~~-~~l~ 93 (717)
++++||||||++++++ +.+..++++|+.+++.|+++|||||||++++..+.. . +..+.|.+ ++.+. ..+.
T Consensus 21 ~~~iViKlGGs~l~~~------~~~~~~~~~i~~l~~~G~~vVlVhGgG~~i~~~~~~-~-~~~~~~~~g~r~t~~~~l~ 92 (282)
T 2bty_A 21 GKTFVIKFGGSAMKQE------NAKKAFIQDIILLKYTGIKPIIVHGGGPAISQMMKD-L-GIEPVFKNGHRVTDEKTME 92 (282)
T ss_dssp TCEEEEEECSHHHHSH------HHHHHHHHHHHHHHHTTCEEEEEECCSHHHHHHHHH-H-TCCCCBSSSSBCBCHHHHH
T ss_pred CCeEEEEECchhhCCh------hHHHHHHHHHHHHHHCCCcEEEEECCcHHHHHHHHH-c-CCCccccCCcccCCHHHHH
Confidence 5789999999999974 357899999999999999999999999999876532 2 33333322 22222 1222
Q ss_pred HHHHHHhchHHHHHHHHHHhhcCCCCcce-------eEeccc-----ccCchhHh-hHHHHHHHHHHhCCCeEEecCCCe
Q 005041 94 GKACAAVGQSSLMALYDTLFSQLDVTSSQ-------LLVTDS-----DFRDEDFR-KQLYDTVQSLLDLRVIPIFNENDA 160 (717)
Q Consensus 94 ~~~~~a~G~~~~~~~~~~~l~~~g~~~~~-------~~~~~~-----d~~~~~~~-~~~~~~i~~lL~~g~vPVv~g~d~ 160 (717)
...+.+.|+.. ..+...|.++|+++.. ++.+.. |+...+.. ..+.+.++++|++|.|||+++
T Consensus 93 ~~~~~~~G~~~--~~l~~~l~~~g~~a~~l~~~~~~~l~~~~~~~~~d~g~~g~v~~~~~~~i~~ll~~g~IpVi~~--- 167 (282)
T 2bty_A 93 IVEMVLVGKIN--KEIVMNLNLHGGRAVGICGKDSKLIVAEKETKHGDIGYVGKVKKVNPEILHALIENDYIPVIAP--- 167 (282)
T ss_dssp HHHHHHHHTHH--HHHHHHHHTTTCCEEEEETTGGGSEEEEECCTTCCCBSBEEEEEECTHHHHHHHHTTCEEEEES---
T ss_pred HHHHHHhhHHH--HHHHHHHHhCCCCceecChhhCCEEEEecCCcccCCCcceEEEEecHHHHHHHHHCCCEEEECC---
Confidence 22333467653 3467888888877533 333321 33332221 123789999999999999985
Q ss_pred eeccCCCCCCCCCee-ecchHHHHHHHhhcCCCEEEEecccCccccCCCccccccccccccccchhHHHhcCCCCCcccC
Q 005041 161 VSTRKAPYEDSSGIF-WDNDSLAGLLALELKADLLVLLSDVEGLYSGPPSEPNSKLIHTYIRAKHQAEITFGDKSRVGRG 239 (717)
Q Consensus 161 v~~~~~~~~~~~~~~-~~sD~~A~~lA~~L~Ad~li~lTDV~GV~~~dP~~p~a~~i~~it~~e~~~~~~~gs~~~~~tg 239 (717)
+.. +..|..+ +|+|++|+.+|.+|+||+|+|+|||||||++ | ++|++|+++|+.++...+ .++|
T Consensus 168 v~~-----~~~G~~~~~~~D~~Aa~lA~~l~Ad~liilTDVdGvy~~----~--~~i~~i~~~e~~~~~~~g----~~~g 232 (282)
T 2bty_A 168 VGI-----GEDGHSYNINADTAAAEIAKSLMAEKLILLTDVDGVLKD----G--KLISTLTPDEAEELIRDG----TVTG 232 (282)
T ss_dssp EEE-----CSSSCEEECCHHHHHHHHHHHHTCSEEEEEESSSSCEET----T--EECCEECHHHHHHHHTTT----CSCT
T ss_pred Ccc-----CCCCCEEEECHHHHHHHHHHHcCCCEEEEEeCCCCeecC----c--hhhhhCCHHHHHHHHHcC----CCCC
Confidence 222 1245556 7999999999999999999999999999997 2 899999999998876543 6799
Q ss_pred ChHHHHHHHHHHHHcCCc-EEEEeCCCcchH-HHHhcCCcceEEEecC
Q 005041 240 GMTAKVNAAYCAACAGIP-VVITSGFAMDSI-IKVLEGKRVGTLFHRD 285 (717)
Q Consensus 240 gM~~Kv~aa~~a~~~gi~-v~I~~g~~~~~l-~~~~tg~~iGT~i~a~ 285 (717)
||.+|+++|..++++|++ ++|+||+.|+.+ .++++++..||.+.+.
T Consensus 233 GM~~K~~aa~~a~~~gv~~v~I~~g~~~~~ll~~~~~~~~~GT~i~~~ 280 (282)
T 2bty_A 233 GMIPKVECAVSAVRGGVGAVHIINGGLEHAILLEIFSRKGIGTMIKEL 280 (282)
T ss_dssp THHHHHHHHHHHHHTTCSCEEEEETTSTTHHHHHHSSSSCSSEEECCC
T ss_pred cHHHHHHHHHHHHHhCCCeEEEecCCCCchHHHHHhcCCCCceEEEeC
Confidence 999999999999999998 999999999998 8899998899999754
No 64
>2buf_A Acetylglutamate kinase; acetyglutamate kinase, ADP, arginine biosynthesis, FEED-BACK inhibition, hexamer, transferase; HET: NLG ADP; 2.95A {Pseudomonas aeruginosa} SCOP: c.73.1.2
Probab=99.98 E-value=2.5e-31 Score=280.90 Aligned_cols=243 Identities=19% Similarity=0.274 Sum_probs=185.8
Q ss_pred CCeEEEEeCCcccccCCCcccHHHHHHHHHHHHHHHHCCCeEEEEecChhHhhHHHHhhhhccCCCccc-ccCcc-ccch
Q 005041 16 VKRVVVKVGTAVVTRSDGRLALGRLGALLEQLKELNSQGFEIILVSSGAVGVGRQRLRYRKLVNSSLAD-LQKPQ-NELD 93 (717)
Q Consensus 16 ~~~iVvKiGGs~l~~~~~~~~~~~l~~l~~~Ia~l~~~G~~vviVhGGg~~~~~~~l~~~~~~~~~~~~-l~~~~-~~l~ 93 (717)
++++||||||+++++++ .+..++++|+.|++.|+++|||||||++++..+.. .++.+.|.+ ++.+. ..+.
T Consensus 26 ~k~iVIKlGGs~l~~~~------~~~~~~~~i~~l~~~G~~vVlVhGgG~~i~~~~~~--~g~~~~~~~g~rvt~~~~l~ 97 (300)
T 2buf_A 26 GKTLVIKYGGNAMESEE------LKAGFARDVVLMKAVGINPVVVHGGGPQIGDLLKR--LSIESHFIDGMRVTDAATMD 97 (300)
T ss_dssp TCEEEEEECCTTTTSSH------HHHHHHHHHHHHHHTTCEEEEEECCCHHHHHHHHH--TTCCCCBSSSSBCBCHHHHH
T ss_pred CCeEEEEECchhhCCch------HHHHHHHHHHHHHHCCCeEEEEECCcHHHHHHHHH--cCCCccccCCeecCCHHHHH
Confidence 48899999999999863 47899999999999999999999999999976532 233333332 22221 1232
Q ss_pred HHHHHHhchHHHHHHHHHHhhcCCCCccee-------Eecc-------c---------ccCchhHh-hHHHHHHHHHHhC
Q 005041 94 GKACAAVGQSSLMALYDTLFSQLDVTSSQL-------LVTD-------S---------DFRDEDFR-KQLYDTVQSLLDL 149 (717)
Q Consensus 94 ~~~~~a~G~~~~~~~~~~~l~~~g~~~~~~-------~~~~-------~---------d~~~~~~~-~~~~~~i~~lL~~ 149 (717)
...+.+.|+. ...+...|..+|+++..+ +.+. + |+...+.+ ..+.+.++++|++
T Consensus 98 ~~~~~~~G~~--~~~l~~~l~~~g~~a~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~d~g~~g~v~~v~~~~i~~lL~~ 175 (300)
T 2buf_A 98 VVEMVLGGQV--NKDIVNLINRHGGSAIGLTGKDAELIRAKKLTVTRQTPEMTKPEIIDIGHVGEVTGVNVGLLNMLVKG 175 (300)
T ss_dssp HHHHHHHHTH--HHHHHHHHHHTTCCEEEEEETGGGCEEEEECCCCCC--------CCCCBSBEEEEEECHHHHHHHHHT
T ss_pred HHHHHHHHHH--HHHHHHHHHhCCCCEEEecCCCCCeeeeeeccccccchhhcccccccCCcceeEEEECHHHHHHHHHC
Confidence 3333446775 346678888888764322 2221 0 33322221 1347899999999
Q ss_pred CCeEEecCCCeeeccCCCCCCCCCee-ecchHHHHHHHhhcCCCEEEEecccCccccCCCccccccccccccccchhHHH
Q 005041 150 RVIPIFNENDAVSTRKAPYEDSSGIF-WDNDSLAGLLALELKADLLVLLSDVEGLYSGPPSEPNSKLIHTYIRAKHQAEI 228 (717)
Q Consensus 150 g~vPVv~g~d~v~~~~~~~~~~~~~~-~~sD~~A~~lA~~L~Ad~li~lTDV~GV~~~dP~~p~a~~i~~it~~e~~~~~ 228 (717)
|.|||+++ +.. +..|..+ +|+|++|+.+|.+|+||+|+|+|||||||+++ +++|++|+++|+.+++
T Consensus 176 g~IpVi~~---v~~-----~~~G~~~~i~~D~~Aa~lA~~l~Ad~li~lTdVdGv~~~~-----a~~i~~i~~~e~~~~~ 242 (300)
T 2buf_A 176 DFIPVIAP---IGV-----GSNGESYNINADLVAGKVAEALKAEKLMLLTNIAGLMDKQ-----GQVLTGLSTEQVNELI 242 (300)
T ss_dssp TCEEEEEE---EEE-----CTTSCEEECCHHHHHHHHHHHHTCSEEEEEESSSCCBCTT-----SCBCCEECHHHHHHHH
T ss_pred CCEEEEcC---cee-----CCCCCEEEECHHHHHHHHHHHcCCCEEEEEeCCCCeECCC-----CcChhhCCHHHHHHHH
Confidence 99999983 222 2245566 69999999999999999999999999999973 8999999999998876
Q ss_pred hcCCCCCcccCChHHHHHHHHHHHHcCCc-EEEEeCCCcchH-HHHhcCCcceEEEecC
Q 005041 229 TFGDKSRVGRGGMTAKVNAAYCAACAGIP-VVITSGFAMDSI-IKVLEGKRVGTLFHRD 285 (717)
Q Consensus 229 ~~gs~~~~~tggM~~Kv~aa~~a~~~gi~-v~I~~g~~~~~l-~~~~tg~~iGT~i~a~ 285 (717)
..+ .++|||.||+++|..++++|++ ++|+||+.|+.+ .++++++..||.+...
T Consensus 243 ~~~----~~~ggM~~Kv~aa~~a~~~gv~~v~I~~g~~~~~ll~~~~~~~~~GT~i~~~ 297 (300)
T 2buf_A 243 ADG----TIYGGMLPKIRCALEAVQGGVTSAHIIDGRVPNAVLLEIFTDSGVGTLISNR 297 (300)
T ss_dssp HTT----CSCTTHHHHHHHHHHHHHTTCSEEEEEETTSTTHHHHHHSSTTCCSEEEECC
T ss_pred HcC----CCCCccHHHHHHHHHHHHhCCCEEEEeeCCCCchHHHHHhcCCCCceEEEeC
Confidence 543 6799999999999999999999 999999999998 8899988899999765
No 65
>3nwy_A Uridylate kinase; allosterically activated form, AAK fold, UMP kinase, transfe; HET: GTP UDP; 2.54A {Mycobacterium tuberculosis}
Probab=99.97 E-value=7.4e-32 Score=279.60 Aligned_cols=238 Identities=18% Similarity=0.268 Sum_probs=174.2
Q ss_pred hHhHHhhccCCeEEEEeCCcccccCCCcccHHHHHHHHHHHHHHHHCCCeEEEEecChhHhhHHHHhhhhccCCCccccc
Q 005041 7 DHTRDFLKNVKRVVVKVGTAVVTRSDGRLALGRLGALLEQLKELNSQGFEIILVSSGAVGVGRQRLRYRKLVNSSLADLQ 86 (717)
Q Consensus 7 ~~~~~~~~~~~~iVvKiGGs~l~~~~~~~~~~~l~~l~~~Ia~l~~~G~~vviVhGGg~~~~~~~l~~~~~~~~~~~~l~ 86 (717)
+|.+.....++++||||||+++++++..++.+.+.+++++|+.++++|+++|||||||. +.+.+..... +++
T Consensus 41 ~~~~~~~~~~krIViKlGGs~L~~~~~~ld~~~i~~la~~I~~l~~~G~~vviV~GgG~-i~~g~~~~~~-------gl~ 112 (281)
T 3nwy_A 41 AASAAQLSGYSRVLLKLGGEMFGGGQVGLDPDVVAQVARQIADVVRGGVQIAVVIGGGN-FFRGAQLQQL-------GME 112 (281)
T ss_dssp ------CCCCSEEEEEECGGGGGTTSSSCCHHHHHHHHHHHHHHHHTTCEEEEEECCTT-C---CCTTTT-------TCC
T ss_pred CcccccCCcCcEEEEEEchhhccCCCCCCCHHHHHHHHHHHHHHHHCCCeEEEEECChh-HhhhHHHHhc-------CCC
Confidence 44555666789999999999999877678899999999999999999999999998754 3332211111 111
Q ss_pred CccccchHHHHHHhchHHHHHHHHHHhhcCCCCcc-eeEecccccCchhHhhHHHHHHHHHHhCCCeEEecCCCeeeccC
Q 005041 87 KPQNELDGKACAAVGQSSLMALYDTLFSQLDVTSS-QLLVTDSDFRDEDFRKQLYDTVQSLLDLRVIPIFNENDAVSTRK 165 (717)
Q Consensus 87 ~~~~~l~~~~~~a~G~~~~~~~~~~~l~~~g~~~~-~~~~~~~d~~~~~~~~~~~~~i~~lL~~g~vPVv~g~d~v~~~~ 165 (717)
..+.. ....+.++++. .+|...|..+|+++. +..++..++.+ .|. +.+.+ ++|++|.|||+++ .
T Consensus 113 ~~~~d-~~g~lat~~n~---~~l~~~L~~~Gi~a~~~~~~~~~~~~~--~~~-~~~~l-~lL~~g~IpVv~g-----~-- 177 (281)
T 3nwy_A 113 RTRSD-YMGMLGTVMNS---LALQDFLEKEGIVTRVQTAITMGQVAE--PYL-PLRAV-RHLEKGRVVIFGA-----G-- 177 (281)
T ss_dssp HHHHH-HHHHHHHHHHH---HHHHHHHHHTTCCEEEEESSCCGGGSE--ECC-HHHHH-HHHHTTCEEEEES-----T--
T ss_pred ccchh-HHHHHHHHHHH---HHHHHHHHHcCCCEEEEeccccccccc--ccc-hHHHH-HHHHcCCeEEEEC-----C--
Confidence 11100 00122233332 267799999999873 44444444432 232 24455 7999999999986 1
Q ss_pred CCCCCCCCeeecchHHHHHHHhhcCCCEEEEecccCccccCCC-ccccccccccccccchhHHHhcCCCCCcccCChHHH
Q 005041 166 APYEDSSGIFWDNDSLAGLLALELKADLLVLLSDVEGLYSGPP-SEPNSKLIHTYIRAKHQAEITFGDKSRVGRGGMTAK 244 (717)
Q Consensus 166 ~~~~~~~~~~~~sD~~A~~lA~~L~Ad~li~lTDV~GV~~~dP-~~p~a~~i~~it~~e~~~~~~~gs~~~~~tggM~~K 244 (717)
.+..++++|++|+.+|.+|+||+|+++|||||||++|| .+|++++|++|+++|+.+ .|+|.+|
T Consensus 178 -----~g~~~~~~D~~Aa~lA~~l~Ad~LiilTDVdGVy~~dP~~~p~A~~i~~is~~e~~~-----------~g~~v~k 241 (281)
T 3nwy_A 178 -----MGLPYFSTDTTAAQRALEIGADVVLMAKAVDGVFAEDPRVNPEAELLTAVSHREVLD-----------RGLRVAD 241 (281)
T ss_dssp -----TSSTTCCHHHHHHHHHHHTTCSEEEEEESSSSCBCC-----CCCCBCSEECHHHHHT-----------TTCCSSC
T ss_pred -----CCCCCCCHHHHHHHHHHHcCCCEEEEeeccCccccCCCCcCCCCeEcccccHHHHHH-----------cCCCcHH
Confidence 23446999999999999999999999999999999999 499999999999988642 2467889
Q ss_pred HHHHHHHHHcCCcEEEEeCCCcchHHHHhcCCcceEEEe
Q 005041 245 VNAAYCAACAGIPVVITSGFAMDSIIKVLEGKRVGTLFH 283 (717)
Q Consensus 245 v~aa~~a~~~gi~v~I~~g~~~~~l~~~~tg~~iGT~i~ 283 (717)
++++..|+++|++++|+|++.|+.+.++++|+..||++.
T Consensus 242 ~~Aa~~a~~~Gi~v~I~~g~~p~~l~~~l~Ge~~GT~i~ 280 (281)
T 3nwy_A 242 ATAFSLCMDNGMPILVFNLLTDGNIARAVRGEKIGTLVT 280 (281)
T ss_dssp HHHHHHHHTTTCCEEEEETTSTTHHHHHHHTCCCSEEEC
T ss_pred HHHHHHHHHCCCeEEEecCCCchHHHHHHcCCCCceEEe
Confidence 999999999999999999999999999999999999875
No 66
>3k4o_A Isopentenyl phosphate kinase; small molecule kinase, ATP-binding, transferase, methanocald jannaschii, isopentenyl monophosphate; 2.05A {Methanocaldococcus jannaschii} PDB: 3k4y_A* 3k52_A* 3k56_A*
Probab=99.97 E-value=2.4e-31 Score=275.60 Aligned_cols=240 Identities=19% Similarity=0.241 Sum_probs=182.3
Q ss_pred CeEEEEeCCcccccCC--CcccHHHHHHHHHHHHHHHHCC------CeEEEEecChhHhhHHHHhhhhccCCC----cc-
Q 005041 17 KRVVVKVGTAVVTRSD--GRLALGRLGALLEQLKELNSQG------FEIILVSSGAVGVGRQRLRYRKLVNSS----LA- 83 (717)
Q Consensus 17 ~~iVvKiGGs~l~~~~--~~~~~~~l~~l~~~Ia~l~~~G------~~vviVhGGg~~~~~~~l~~~~~~~~~----~~- 83 (717)
+++|||+||+++++++ ..++.+.+.+++++|+.+++.| .++|||||||++ ++.+++.. ++++. |.
T Consensus 7 m~iVIKlGGs~l~~~~~~~~~~~~~l~~la~~i~~l~~~G~~~~~~~~vVlVhGGG~~-~~~~~~~l-gi~~~~~~~~~~ 84 (266)
T 3k4o_A 7 MLTILKLGGSILSDKNVPYSIKWDNLERIAMEIKNALDYYKNQNKEIKLILVHGGGAF-GHPVAKKY-LKIEDGKKIFIN 84 (266)
T ss_dssp CEEEEEECTTSSCCTTSTTCCCHHHHHHHHHHHHHHHHHHHHTTCCCEEEEEECCHHH-HHHHHGGG-EEECSSSEEECC
T ss_pred eEEEEEEchHHeeCCCccCCcCHHHHHHHHHHHHHHHhccccccCCCCEEEEeCchHH-HHHHHHHc-CCCcccCccccc
Confidence 4699999999999864 3788999999999999999888 999999999886 44433333 34333 22
Q ss_pred ---cccCccccchHHHHHHhchHHHHHHHHHHhhcCCCCcceeEecccccCchhHhhHHHHHHHHHHhCCCeEEecCCCe
Q 005041 84 ---DLQKPQNELDGKACAAVGQSSLMALYDTLFSQLDVTSSQLLVTDSDFRDEDFRKQLYDTVQSLLDLRVIPIFNENDA 160 (717)
Q Consensus 84 ---~l~~~~~~l~~~~~~a~G~~~~~~~~~~~l~~~g~~~~~~~~~~~d~~~~~~~~~~~~~i~~lL~~g~vPVv~g~d~ 160 (717)
+++.++ ++++ .++..+...|..+|+++.++...+..+...+.+ .+.+.++++|++|.|||+++ |.
T Consensus 85 ~~~G~r~T~--------~a~~--~ln~~l~~~l~~~G~~a~~l~~~d~~~~~~g~~-v~~~~i~~lL~~g~ipVi~~-~~ 152 (266)
T 3k4o_A 85 MEKGFWEIQ--------RAMR--RFNNIIIDTLQSYDIPAVSIQPSSFVVFGDKLI-FDTSAIKEMLKRNLVPVIHG-DI 152 (266)
T ss_dssp HHHHHHHHH--------HHHH--HHHHHHHHHHHTTTCCEEEECGGGTCEESSSCB-CCCHHHHHHHHTTCEEEEEC-EE
T ss_pred ccCceeHHH--------HHHH--HHHHHHHHHHHHCCCcEEEeeHHHcCcccCceE-ecHHHHHHHHHCCCEEEEeC-CE
Confidence 111111 1222 355667889999999888764322111111112 23689999999999999995 44
Q ss_pred eeccCCCCCCCCCee-ecchHHHHHHHhhcCCCEEEEecccCccccCCCccccccccccccccchhHHHh--cCCCCCcc
Q 005041 161 VSTRKAPYEDSSGIF-WDNDSLAGLLALELKADLLVLLSDVEGLYSGPPSEPNSKLIHTYIRAKHQAEIT--FGDKSRVG 237 (717)
Q Consensus 161 v~~~~~~~~~~~~~~-~~sD~~A~~lA~~L~Ad~li~lTDV~GV~~~dP~~p~a~~i~~it~~e~~~~~~--~gs~~~~~ 237 (717)
+... .++.+ +|+|++|+++|.+|+||+|+|+||||||| .|| +++++++.+|+++++. .++.+.++
T Consensus 153 ~~~~------~g~~~~~~~D~~Aa~lA~~l~Ad~li~ltdvdGv~-~d~-----~~i~~~~~~e~~~l~~~~~~~~~~~~ 220 (266)
T 3k4o_A 153 VIDD------KNGYRIISGDDIVPYLANELKADLILYATDVDGVL-IDN-----KPIKRIDKNNIYKILNYLSGSNSIDV 220 (266)
T ss_dssp EEES------SSCEEEECHHHHHHHHHHHHTCSEEEEEESSSSSB-SSS-----SBCSEECTTTHHHHHHHHHSTTCSCC
T ss_pred EEcC------CCCeeeeCHHHHHHHHHHHcCCCEEEEEecCCeEE-eCC-----eecCcCCHHHHHHHHHHhccccCCcc
Confidence 4431 33344 99999999999999999999999999999 654 6999999888776543 34555689
Q ss_pred cCChHHHHHHHHHHHHcCCcEEEEeCCCcchHHHHhcCCcceEEEecC
Q 005041 238 RGGMTAKVNAAYCAACAGIPVVITSGFAMDSIIKVLEGKRVGTLFHRD 285 (717)
Q Consensus 238 tggM~~Kv~aa~~a~~~gi~v~I~~g~~~~~l~~~~tg~~iGT~i~a~ 285 (717)
+|||.+|+++|..+++ +++|+||+.++.+.++++|+..||++.+.
T Consensus 221 tGGM~~Kv~aa~~a~~---~v~I~~g~~~~~l~~~l~g~~~GT~i~~~ 265 (266)
T 3k4o_A 221 TGGMKYKIEMIRKNKC---RGFVFNGNKANNIYKALLGEVEGTEIDFS 265 (266)
T ss_dssp SSHHHHHHHHHHHTTC---EEEEEETTSTTHHHHHHTTCCCSEEEECC
T ss_pred cCCHHHHHHHHHHHhc---CEEEEeCCCccHHHHHhCCCCCceEEEeC
Confidence 9999999999999987 99999999999999999999999999765
No 67
>4axs_A Carbamate kinase; oxidoreductase; 2.50A {Mycoplasma penetrans}
Probab=99.97 E-value=5e-31 Score=278.69 Aligned_cols=265 Identities=18% Similarity=0.216 Sum_probs=175.1
Q ss_pred HhHHhhccCCeEEEEeCCcccccCCCcccHHHHHHHHHHHHHHHHCCCeEEEEecChhHhhHHHHhhhh-ccCCCccccc
Q 005041 8 HTRDFLKNVKRVVVKVGTAVVTRSDGRLALGRLGALLEQLKELNSQGFEIILVSSGAVGVGRQRLRYRK-LVNSSLADLQ 86 (717)
Q Consensus 8 ~~~~~~~~~~~iVvKiGGs~l~~~~~~~~~~~l~~l~~~Ia~l~~~G~~vviVhGGg~~~~~~~l~~~~-~~~~~~~~l~ 86 (717)
|.++-.+.|+++|||+|||++.+.. ..+.++++.++++|+.|++.|+++|||||||||+|.....+.. ..... ...
T Consensus 16 ~~~~d~K~MkRIVIklGGnAL~~~~-~~q~~~~~~~a~~Ia~L~~~G~~vVvVHGgGPQVG~i~~~l~~~~~~~~--~~~ 92 (332)
T 4axs_A 16 HIDDDDKHMSRIVIALGGNALGDNP-SQQKELVKIPAAKIAALIQEGHEVIVGHGNGPQVGMIFNAFADAKKANE--KTA 92 (332)
T ss_dssp ----------CEEEEECGGGGCSSH-HHHHHHTHHHHHHHHHHHHTTCCEEEEECCHHHHHHHHHHHHHTTTTTS--CCC
T ss_pred cccccccCcceEEEEEChhhcCCCh-HHHHHHHHHHHHHHHHHHHCCCEEEEEcCCcHHHHHHHHHHHHhccccC--CCC
Confidence 4667777788999999999998642 1234567889999999999999999999999999976433221 11111 111
Q ss_pred Ccccc-chHHHHHHhchHHHHHHHHHHhhcCCCCc------ceeEecccc--cCc-------------------------
Q 005041 87 KPQNE-LDGKACAAVGQSSLMALYDTLFSQLDVTS------SQLLVTDSD--FRD------------------------- 132 (717)
Q Consensus 87 ~~~~~-l~~~~~~a~G~~~~~~~~~~~l~~~g~~~------~~~~~~~~d--~~~------------------------- 132 (717)
...+. ........+|.. +...+.+.|...++.. .|+.++..| |.+
T Consensus 93 ~~~l~~~~a~tqg~ig~~-l~~~l~~~l~~~gi~~~v~~~vtqv~V~~~D~af~~p~K~iG~~~~~~ea~~l~~~~~~~~ 171 (332)
T 4axs_A 93 LVPFAEAGGMSQGYIGYH-MLTAISNELKKLNIQKDVLYFLTQTIVDANDPAFKNPTKPVGPFYSSKEIAEANNPNSVIV 171 (332)
T ss_dssp CCCHHHHHHHHHHHHHHH-HHHHHHHHHHHTTCCCCEEECCCEEEECTTCHHHHSCCEECSCCCC--------CTTSCCC
T ss_pred CchhHHHHHHHHHHHHHH-HHHHHHHHHHhcCCCcceeeeeeeeeecccchhhhCcCceeccccCHHHHHHHHhcCCEEE
Confidence 11111 011111222221 3344556676776542 244443222 100
Q ss_pred ----hhHh----------hHHHHHHHHHHhCCCeEEecCCCeeeccCCCCCCCCCe-eecchHHHHHHHhhcCCCEEEEe
Q 005041 133 ----EDFR----------KQLYDTVQSLLDLRVIPIFNENDAVSTRKAPYEDSSGI-FWDNDSLAGLLALELKADLLVLL 197 (717)
Q Consensus 133 ----~~~~----------~~~~~~i~~lL~~g~vPVv~g~d~v~~~~~~~~~~~~~-~~~sD~~A~~lA~~L~Ad~li~l 197 (717)
.+++ ..+.+.|+.|+++|+|||+.|.+.+..........|.. ++|+|++|+.+|.+|+||+|||+
T Consensus 172 ~~~~~g~rrvV~sp~p~~ive~~~I~~L~~~g~Ivi~~ggggipv~~~~~~~~G~~~vid~D~~Aa~lA~~l~Ad~LiiL 251 (332)
T 4axs_A 172 EDAGRGFRKVVASPIPVDFIGIDAIKQNVNNGCVCIVGGGGGIPTIIQDNQYIGVDGVIDKDFALAKIADAVNADIFVVL 251 (332)
T ss_dssp --------CEECCCCEEEETTHHHHHHHHHTTCEEECCGGGCEEEEESSSCEEECSSCCCHHHHHHHHHHHTTCSEEEEE
T ss_pred EccCCCceEECCCCCCceeecHHHHHHhhcCCeEEEecccCCCCccccCCcccCceeeechHHHHHHHHHHhCCceEEEE
Confidence 0000 03468999999999999998766544322222212223 39999999999999999999999
Q ss_pred cccCccccCCCccccccccccccccchhHHHhcCCCCCcccCChHHHHHHHHHHHHcCCc--EEEEeCCCcchHHHHhcC
Q 005041 198 SDVEGLYSGPPSEPNSKLIHTYIRAKHQAEITFGDKSRVGRGGMTAKVNAAYCAACAGIP--VVITSGFAMDSIIKVLEG 275 (717)
Q Consensus 198 TDV~GV~~~dP~~p~a~~i~~it~~e~~~~~~~gs~~~~~tggM~~Kv~aa~~a~~~gi~--v~I~~g~~~~~l~~~~tg 275 (717)
|||||||+++| +|++++|+++|.+|+.+++..| ...+|||.||++||..++++|.. ++|.+ ++.+.+.+.|
T Consensus 252 TdV~gv~~~~~-~~~~~~i~~it~~e~~~~~~~g---~~~~GgM~pKv~Aa~~~v~~g~g~~~iI~~---~~~~~~~l~g 324 (332)
T 4axs_A 252 TAVDYVYVDFN-KPTQKALKTVDVKALNNFINQD---QFAKGSMLPKIKAAMGFVNGHPNRSAIIAD---LSKVEDALKG 324 (332)
T ss_dssp CSCSSCEESTT-STTCEECSSCBHHHHHHHHHTT---CSCTTTTHHHHHHHHHHHTTCTTCEEEEEC---STTHHHHTTT
T ss_pred ecCCceEcCCC-CcchhhcccCCHHHHHHHHHCC---CcCcCCcHHHHHHHHHHHHhCCCcEEEECC---HHHHHHHHCC
Confidence 99999999887 5889999999999999888754 36789999999999999998764 55544 5668888888
Q ss_pred CcceEEEec
Q 005041 276 KRVGTLFHR 284 (717)
Q Consensus 276 ~~iGT~i~a 284 (717)
+ .||.+.+
T Consensus 325 ~-~GT~IvA 332 (332)
T 4axs_A 325 L-SGTKIIA 332 (332)
T ss_dssp S-SSEEEBC
T ss_pred C-CCcEEeC
Confidence 6 6998864
No 68
>2egx_A Putative acetylglutamate kinase; struc genomics, NPPSFA, national project on protein structural AN functional analyses; 1.92A {Thermus thermophilus} PDB: 3u6u_A
Probab=99.97 E-value=2.5e-31 Score=276.82 Aligned_cols=235 Identities=21% Similarity=0.211 Sum_probs=168.6
Q ss_pred eEEEEeCCcccccCCCcccHHHHHHHHHHHHHHHHCCCeEEEEecChhHhhHHHHhhhhccC---CCcc-cc--cCcccc
Q 005041 18 RVVVKVGTAVVTRSDGRLALGRLGALLEQLKELNSQGFEIILVSSGAVGVGRQRLRYRKLVN---SSLA-DL--QKPQNE 91 (717)
Q Consensus 18 ~iVvKiGGs~l~~~~~~~~~~~l~~l~~~Ia~l~~~G~~vviVhGGg~~~~~~~l~~~~~~~---~~~~-~l--~~~~~~ 91 (717)
++||||||+++. . +..++++|+.+++.|+++|||||||++++..+.+ . +.. +.+. ++ +.+...
T Consensus 1 ~iViKlGGs~l~--~-------~~~~~~~i~~l~~~G~~vViVhGgg~~~~~~~~~-~-~~~~~~~~~~~g~~~rvt~~~ 69 (269)
T 2egx_A 1 MIVVKVGGAEGI--N-------YEAVAKDAASLWKEGVKLLLVHGGSAETNKVAEA-L-GHPPRFLTHPGGQVSRLTDRK 69 (269)
T ss_dssp CEEEEECCSTTC--C-------HHHHHHHHHHHHHHTCCEEEECCCHHHHHHHHHH-T-TCCCCC-------CCCCCCHH
T ss_pred CEEEEECHHHHH--H-------HHHHHHHHHHHHHCCCeEEEEECChHHHHHHHHH-c-CCccccccccCCccCcCCCHH
Confidence 589999999997 2 7899999999999999999999999999765432 2 232 1121 12 222111
Q ss_pred chHHHHHHhchHHHHHHHHHHhhcCCCCcceeEeccccc----------------------CchhH-hhHHHHHHHHHHh
Q 005041 92 LDGKACAAVGQSSLMALYDTLFSQLDVTSSQLLVTDSDF----------------------RDEDF-RKQLYDTVQSLLD 148 (717)
Q Consensus 92 l~~~~~~a~G~~~~~~~~~~~l~~~g~~~~~~~~~~~d~----------------------~~~~~-~~~~~~~i~~lL~ 148 (717)
....+.++++-.++..+...|.++|+++..+...+..+ ...+. ...+.+.++++|+
T Consensus 70 -~l~~~~~~~~G~i~~~l~~~l~~~G~~a~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~D~g~~g~i~~v~~~~i~~ll~ 148 (269)
T 2egx_A 70 -TLEIFEMVYCGLVNKRLVELLQKEGANAIGLSGLDGRLFVGRRKTAVKYVENGKVKVHRGDYTGTVEEVNKALLDLLLQ 148 (269)
T ss_dssp -HHHHHHHHHHTHHHHHHHHHHHHTTCCEEEEETTGGGCEEECBC----------------CCEECCCEECHHHHHHHHH
T ss_pred -HHHHHHHHHHhHHHHHHHHHHHHCCCCeEEeCCCCccceeeeecccccccccccccCCcCCCCCCceEECHHHHHHHHH
Confidence 11233344332345677899999998776332111111 10010 1134789999999
Q ss_pred CCCeEEecCCCeeeccCCCCCCCCCee-ecchHHHHHHHhhcCCCEEEEecccCccccCCCccccccccccccccchh--
Q 005041 149 LRVIPIFNENDAVSTRKAPYEDSSGIF-WDNDSLAGLLALELKADLLVLLSDVEGLYSGPPSEPNSKLIHTYIRAKHQ-- 225 (717)
Q Consensus 149 ~g~vPVv~g~d~v~~~~~~~~~~~~~~-~~sD~~A~~lA~~L~Ad~li~lTDV~GV~~~dP~~p~a~~i~~it~~e~~-- 225 (717)
+|.|||+++ +.. +..+..+ +|+|++|+.+|.+|+||+|+|+|||||||+ || .|++++|++|+++|+.
T Consensus 149 ~g~ipVi~~---v~~-----~~~g~~~~~~~D~~Aa~lA~~l~Ad~li~lTdVdGv~~-dp-~~~a~~i~~i~~~e~~~~ 218 (269)
T 2egx_A 149 AGYLPVLTP---PAL-----SYENEAINTDGDQIAALLATLYGAEALVYLSNVPGLLA-RY-PDEASLVREIPVERIEDP 218 (269)
T ss_dssp TTCEEEEEC---CEE-----ETTSCEEEECHHHHHHHHHHHHTCSEEEEEESSSSCBC--------CBCCEECHHHHHCH
T ss_pred CCCEEEEcC---cEE-----CCCCCEEEeCHHHHHHHHHHHcCCCEEEEEeCchhhhc-CC-CCCccccccCCHHHhhHH
Confidence 999999984 222 1134444 999999999999999999999999999999 88 6899999999999988
Q ss_pred HHHhcCCCCCcccCChHHHHHHHHHHHHcCC-cEEEEeCCCcchHHHHhcCCcceEEE
Q 005041 226 AEITFGDKSRVGRGGMTAKVNAAYCAACAGI-PVVITSGFAMDSIIKVLEGKRVGTLF 282 (717)
Q Consensus 226 ~~~~~gs~~~~~tggM~~Kv~aa~~a~~~gi-~v~I~~g~~~~~l~~~~tg~~iGT~i 282 (717)
++ . .+++|||.+|+++|..|+++|+ +++|+|++.|+.+...+.| .||.+
T Consensus 219 ~l-~-----~~~~ggm~~Kl~aa~~a~~~gv~~v~I~~g~~~~~l~~~l~g--~GT~i 268 (269)
T 2egx_A 219 EY-L-----ALAQGRMKRKVMGAVEAVKGGVKRVVFADGRVENPIRRALSG--EGTVV 268 (269)
T ss_dssp HH-H-----TTSCHHHHHHHHHHHHHHHTTCSCEEEEESSSSSHHHHHHTT--CSEEE
T ss_pred Hh-c-----CCCCCchHHHHHHHHHHHHcCCCeEEEEeCCCchHHHHHhCC--CCeEE
Confidence 65 2 3779999999999999999999 6999999999999887777 78876
No 69
>1e19_A Carbamate kinase-like carbamoylphosphate synthetase; transferase, hyperthermophiles, ADP site, phosphoryl group transfer; HET: ADP; 1.5A {Pyrococcus furiosus} SCOP: c.73.1.1
Probab=99.97 E-value=6.6e-31 Score=278.91 Aligned_cols=254 Identities=20% Similarity=0.233 Sum_probs=182.6
Q ss_pred cCCeEEEEeCCcccccCCC----cccHHHHHHHHHHHHHHHHCCCeEEEEecChhHhhHHHHhhhhccCCCcccccCccc
Q 005041 15 NVKRVVVKVGTAVVTRSDG----RLALGRLGALLEQLKELNSQGFEIILVSSGAVGVGRQRLRYRKLVNSSLADLQKPQN 90 (717)
Q Consensus 15 ~~~~iVvKiGGs~l~~~~~----~~~~~~l~~l~~~Ia~l~~~G~~vviVhGGg~~~~~~~l~~~~~~~~~~~~l~~~~~ 90 (717)
|++++||||||++++++++ .++.+++.+++++|+.|++.|+++|||||||++++..+.+.... +.+..++...+
T Consensus 1 m~k~iViK~GGsal~~~~~~~~~~~~~~~~~~~a~~I~~l~~~G~~vVlVhGgg~~i~~~l~~~~~~--~~~~~~~~~~l 78 (314)
T 1e19_A 1 MGKRVVIALGGNALQQRGQKGSYEEMMDNVRKTARQIAEIIARGYEVVITHGNGPQVGSLLLHMDAG--QATYGIPAQPM 78 (314)
T ss_dssp -CCEEEEECCGGGTCCTTCCCCHHHHHHHHHHHHHHHHHHHHTTCEEEEECCCHHHHHHHHHHHHHH--HHHHCCCCCCH
T ss_pred CCCEEEEEEChHHhcCCCCccchhhhHHHHHHHHHHHHHHHHCCCeEEEEeCChHHHhHHHHhccCc--cccCCCChhHH
Confidence 4589999999999996653 24557899999999999999999999999999999877543221 11200111111
Q ss_pred cchHHHHHHhchH--HHHHHHHHHhhcCCCCc------ceeEecccc--cCch-------------h-------------
Q 005041 91 ELDGKACAAVGQS--SLMALYDTLFSQLDVTS------SQLLVTDSD--FRDE-------------D------------- 134 (717)
Q Consensus 91 ~l~~~~~~a~G~~--~~~~~~~~~l~~~g~~~------~~~~~~~~d--~~~~-------------~------------- 134 (717)
. ...+...|+. .++.++...|.++|+++ +|+.++..| |... .
T Consensus 79 ~--~~~a~~~G~i~~~l~~~l~~~l~~~gi~a~~~~~~~qv~l~~~d~~f~~~~k~~g~~~t~~~a~~~~~~~g~~~~g~ 156 (314)
T 1e19_A 79 D--VAGAMSQGWIGYMIQQALKNELRKRGMEKKVVTIITQTIVDKNDPAFQNPTKPVGPFYDEETAKRLAREKGWIVKED 156 (314)
T ss_dssp H--HHHHHHHHHHHHHHHHHHHHHHHHTTCCCCEEEBCCEEEECTTCGGGTSCCEEEEEEECHHHHHHHHHHHCCEEEEC
T ss_pred H--HHHHHHhhHHHHHHHHHHHHHHHHcCCchhhhhhheeeeecccchhhccccccccceecHHHhhhhhhhcCcccccc
Confidence 1 1111223332 34667788899999864 344444222 1100 0
Q ss_pred --------------HhhHHHHHHHHHHhCCCeEEecCCCeeeccCCCCCCC---CCe-eecchHHHHHHHhhcCCCEEEE
Q 005041 135 --------------FRKQLYDTVQSLLDLRVIPIFNENDAVSTRKAPYEDS---SGI-FWDNDSLAGLLALELKADLLVL 196 (717)
Q Consensus 135 --------------~~~~~~~~i~~lL~~g~vPVv~g~d~v~~~~~~~~~~---~~~-~~~sD~~A~~lA~~L~Ad~li~ 196 (717)
....+.+.++++|++|+|||++|+..++.. .+.+ +.. ++|+|++|+.+|.+|+||+|+|
T Consensus 157 ~~~~~~~~v~s~~~i~~v~~~~i~~lL~~g~IpV~~Gg~giPi~---~~~d~~~g~~~~~d~D~~Aa~lA~~l~Ad~li~ 233 (314)
T 1e19_A 157 SGRGWRRVVPSPDPKGHVEAETIKKLVERGVIVIASGGGGVPVI---LEDGEIKGVEAVIDKDLAGEKLAEEVNADIFMI 233 (314)
T ss_dssp TTSCEEEEECCCCEEEETTHHHHHHHHHTTCEEECSGGGCEEEE---EETTEEEECCCCCCHHHHHHHHHHHTTCSEEEE
T ss_pred ccccccccccCcccceeehHHHHHHHHHCCCEEEEeCCCccCeE---ECCCCcceeEEeccHHHHHHHHHHHcCCCEEEE
Confidence 001257899999999999999865444321 1112 222 3999999999999999999999
Q ss_pred ecccCccccCCCccccccccccccccchhHHHhcCCCCCcccCChHHHHHHHHHHHHc-CCcEEEEeCCCcchHHHHhcC
Q 005041 197 LSDVEGLYSGPPSEPNSKLIHTYIRAKHQAEITFGDKSRVGRGGMTAKVNAAYCAACA-GIPVVITSGFAMDSIIKVLEG 275 (717)
Q Consensus 197 lTDV~GV~~~dP~~p~a~~i~~it~~e~~~~~~~gs~~~~~tggM~~Kv~aa~~a~~~-gi~v~I~~g~~~~~l~~~~tg 275 (717)
+|||||||++|| +|++++|++|+++|+.+++..+ ...+|||.||+++|..+++. +++++|+|+ +.+.+.+++
T Consensus 234 lTdVdGvy~~~p-~~~a~~i~~i~~~e~~~~~~~g---~~~~GgM~~Kv~aa~~~~~~~~~~v~I~~~---~~l~~~~~g 306 (314)
T 1e19_A 234 LTDVNGAALYYG-TEKEQWLREVKVEELRKYYEEG---HFKAGSMGPKVLAAIRFIEWGGERAIIAHL---EKAVEALEG 306 (314)
T ss_dssp EESSSSCEETTT-STTCEECCEEEHHHHHHHHHTT---CSCTTTHHHHHHHHHHHHHHTCSEEEEEEG---GGHHHHHTT
T ss_pred eccCCEEECCCC-CCCCeECCEECHHHHHHHHhCC---CcCCCChHHHHHHHHHHHHhCCCeEEEecH---HHHHHHHcC
Confidence 999999999998 7899999999999998876543 36789999999999997775 556999984 568888887
Q ss_pred CcceEEEe
Q 005041 276 KRVGTLFH 283 (717)
Q Consensus 276 ~~iGT~i~ 283 (717)
..||++.
T Consensus 307 -~~GT~i~ 313 (314)
T 1e19_A 307 -KTGTQVL 313 (314)
T ss_dssp -SSSEEEE
T ss_pred -CCCeEEc
Confidence 4899875
No 70
>2we5_A Carbamate kinase 1; arginine catabolism, arginine metabolism, ATP synthesys, open alpha/beta sheet, phosphotransferase, transferase; HET: ADP; 1.39A {Enterococcus faecalis} PDB: 1b7b_A 2we4_A*
Probab=99.97 E-value=6.3e-31 Score=279.06 Aligned_cols=252 Identities=19% Similarity=0.200 Sum_probs=178.5
Q ss_pred cCCeEEEEeCCcccccCCCccc----HHHHHHHHHHHHHHHHCCCeEEEEecChhHhhHHHHhhhhccCCCcccccCccc
Q 005041 15 NVKRVVVKVGTAVVTRSDGRLA----LGRLGALLEQLKELNSQGFEIILVSSGAVGVGRQRLRYRKLVNSSLADLQKPQN 90 (717)
Q Consensus 15 ~~~~iVvKiGGs~l~~~~~~~~----~~~l~~l~~~Ia~l~~~G~~vviVhGGg~~~~~~~l~~~~~~~~~~~~l~~~~~ 90 (717)
|++++||||||+++++. ..+ .+++..++++|+.|++.|+++|||||||++++..+.+ . +..++|. .+...
T Consensus 1 ~~k~iVIKlGGs~l~~~--~~~~~~~~~~~~~~a~~I~~l~~~G~~vVlVhGgg~~~~~~l~~-~-~~~~~~~-~~~~~- 74 (310)
T 2we5_A 1 MGKKMVVALGGNAILSN--DASAHAQQQALVQTSAYLVHLIKQGHRLIVSHGNGPQVGNLLLQ-Q-QAADSEK-NPAMP- 74 (310)
T ss_dssp -CCEEEEECCGGGGCCS--SCSHHHHHHHHHHHHHHHHHHHHTTCEEEEECCCHHHHHHHHHH-H-HHTCSSS-SCCCC-
T ss_pred CCcEEEEEEChHHhcCC--CCChHHHHHHHHHHHHHHHHHHHCCCeEEEEECCcHHHhHHHHH-c-CCCCCCC-CCHHH-
Confidence 35789999999999972 233 2678999999999999999999999999999975432 2 2222331 11111
Q ss_pred cchHHHHHHhchHHH--HHHHHHHhhcCCCCc-------------------------ceeEecccc--------c--C-c
Q 005041 91 ELDGKACAAVGQSSL--MALYDTLFSQLDVTS-------------------------SQLLVTDSD--------F--R-D 132 (717)
Q Consensus 91 ~l~~~~~~a~G~~~~--~~~~~~~l~~~g~~~-------------------------~~~~~~~~d--------~--~-~ 132 (717)
+....+.+.|+.+. ...+...|...|++. .++ ++..| + . +
T Consensus 75 -l~~~~a~~~G~l~~~i~~al~~~l~~~g~~~~v~~~l~~~~v~~~d~~f~~~~~~vg~~-~t~~da~~l~~~~~~~~~~ 152 (310)
T 2we5_A 75 -LDTCVAMTQGSIGYWLSNALNQELNKAGIKKQVATVLTQVVVDPADEAFKNPTKPIGPF-LTEAEAKEAMQAGAIFKED 152 (310)
T ss_dssp -HHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCCEEEBCCEEEECTTCHHHHSCCEEEEEE-ECHHHHHHHHTTTCCEEEC
T ss_pred -HHHHHHHhhhHHHHHHHHHHHHHHHhcCCchhhHhhhhhhcccccchhhcccCceeEEe-ccHHHHHHHHhcccccccc
Confidence 11222234444322 123345565555532 111 12111 2 0 0
Q ss_pred --hh---------H-hhHHHHHHHHHHhCCCeEEecCCCeeeccCCCCCCCCCe-eecchHHHHHHHhhcCCCEEEEecc
Q 005041 133 --ED---------F-RKQLYDTVQSLLDLRVIPIFNENDAVSTRKAPYEDSSGI-FWDNDSLAGLLALELKADLLVLLSD 199 (717)
Q Consensus 133 --~~---------~-~~~~~~~i~~lL~~g~vPVv~g~d~v~~~~~~~~~~~~~-~~~sD~~A~~lA~~L~Ad~li~lTD 199 (717)
.+ + ..++.+.++++|++|+|||++|++.++..+ .+..+.. ++|+|++|+.+|.+|+||+|+|+||
T Consensus 153 ~~~~~~~vv~sp~~i~~v~~~~i~~lL~~g~IpIi~Gg~Gipv~~--~~~~g~~~~~~~D~~Aa~lA~~l~Ad~LiilTd 230 (310)
T 2we5_A 153 AGRGWRKVVPSPKPIDIHEAETINTLIKNDIITISCGGGGIPVVG--QELKGVEAVIDKDFASEKLAELVDADALVILTG 230 (310)
T ss_dssp TTSCEEEEECCCCEEEETTHHHHHHHHHTTCEEECCGGGCEEEET--TTTEECCCCCCHHHHHHHHHHHTTCSEEEEECS
T ss_pred CCcceeeccCCcccceeehHHHHHHHHHCCCEEEEECCCCCCCcC--CCCCCcEeecCHHHHHHHHHHHcCCCEEEEEeC
Confidence 00 0 114578999999999999999866655411 1112323 3999999999999999999999999
Q ss_pred cCccccCCCccccccccccccccchhHHHhcCCCCCcccCChHHHHHHHHHHHHcCC--cEEEEeCCCcchHHHHhcCCc
Q 005041 200 VEGLYSGPPSEPNSKLIHTYIRAKHQAEITFGDKSRVGRGGMTAKVNAAYCAACAGI--PVVITSGFAMDSIIKVLEGKR 277 (717)
Q Consensus 200 V~GV~~~dP~~p~a~~i~~it~~e~~~~~~~gs~~~~~tggM~~Kv~aa~~a~~~gi--~v~I~~g~~~~~l~~~~tg~~ 277 (717)
|||||+ ||.+|++++|++|+++|+.+++..+ ...+|||.||+++|..++++|+ +++|+| ++++.+.++++.
T Consensus 231 VdGVy~-dp~~~~a~~i~~i~~~e~~~~~~~g---~~~~GgM~~Kv~aa~~a~~~gv~~~v~I~~---~~~l~~~l~g~~ 303 (310)
T 2we5_A 231 VDYVCI-NYGKPDEKQLTNVTVAELEEYKQAG---HFAPGSMLPKIEAAIQFVESQPNKQAIITS---LENLGSMSGDEI 303 (310)
T ss_dssp CSSCEE-STTSTTCEECCEEEHHHHHHHHHTT---CSCTTTTHHHHHHHHHHHHHSTTCEEEEEC---SGGGGGCBTTBC
T ss_pred chHhhC-CCCCCCCeECCEEcHHHHHHHhhCC---CCCCCChHHHHHHHHHHHHcCCCceEEECc---HHHHHHHHcCCC
Confidence 999999 6778999999999999998876543 2456999999999999999999 699997 566888889988
Q ss_pred ceEEEe
Q 005041 278 VGTLFH 283 (717)
Q Consensus 278 iGT~i~ 283 (717)
.||.+.
T Consensus 304 ~GT~i~ 309 (310)
T 2we5_A 304 VGTVVT 309 (310)
T ss_dssp CSEEEE
T ss_pred CCeEEe
Confidence 999875
No 71
>2va1_A Uridylate kinase; UMPK, transferase, pyrimidine biosynthesis, amino acid kinase family; 2.50A {Ureaplasma parvum}
Probab=99.97 E-value=1.2e-30 Score=269.51 Aligned_cols=231 Identities=17% Similarity=0.248 Sum_probs=170.3
Q ss_pred hccCCeEEEEeCCcccccCCC-cccHHHHHHHHHHHHHHHHCCCeEEEEecChhHhhHHHHhhhhccCCCcccccCcccc
Q 005041 13 LKNVKRVVVKVGTAVVTRSDG-RLALGRLGALLEQLKELNSQGFEIILVSSGAVGVGRQRLRYRKLVNSSLADLQKPQNE 91 (717)
Q Consensus 13 ~~~~~~iVvKiGGs~l~~~~~-~~~~~~l~~l~~~Ia~l~~~G~~vviVhGGg~~~~~~~l~~~~~~~~~~~~l~~~~~~ 91 (717)
|+.++++|||||||+++++++ .++.+++..++++|+.++ .|+++|||||||+.+....++.. +.+..+. +
T Consensus 21 ~~~~k~iVIKiGGs~l~~~~~~~~~~~~i~~~a~~i~~l~-~g~~vVlVhGgG~~~~~~~~~~~-g~~~~~~--~----- 91 (256)
T 2va1_A 21 MMRKQRIVIKISGACLKQNDSSIIDFIKINDLAEQIEKIS-KKYIVSIVLGGGNIWRGSIAKEL-DMDRNLA--D----- 91 (256)
T ss_dssp --CCSEEEEEECGGGGCSSTTCSSCHHHHHHHHHHHHHHT-TTSEEEEEECCTTTCCHHHHHHT-TCCHHHH--H-----
T ss_pred hhhcCEEEEEechhhccCCCCCCCCHHHHHHHHHHHHHHh-CCCEEEEEECCcHHhccchHHHc-CCCCCch--h-----
Confidence 666789999999999998642 577888999999999999 89999999999876555322211 2211111 1
Q ss_pred chHHHHHHhchHHHHHHHHHHhhcCCCCccee-EecccccCchhHhhHHHHHHHHHHhCCCeEEecCCCeeeccCCCCCC
Q 005041 92 LDGKACAAVGQSSLMALYDTLFSQLDVTSSQL-LVTDSDFRDEDFRKQLYDTVQSLLDLRVIPIFNENDAVSTRKAPYED 170 (717)
Q Consensus 92 l~~~~~~a~G~~~~~~~~~~~l~~~g~~~~~~-~~~~~d~~~~~~~~~~~~~i~~lL~~g~vPVv~g~d~v~~~~~~~~~ 170 (717)
...++...++..+ +...|..+|+++..+ .++.+++.+. +.+ .+. .++|++|.|||++| .
T Consensus 92 -~~~~l~~~~n~~l---~~~~l~~~Gi~a~~~~~~t~~~~~~~--~~~-~~~-~~lL~~g~IpVi~~-----~------- 151 (256)
T 2va1_A 92 -NMGMMATIINGLA---LENALNHLNVNTIVLSAIKCDKLVHE--SSA-NNI-KKAIEKEQVMIFVA-----G------- 151 (256)
T ss_dssp -HHHHHHHHHHHHH---HHHHHHTTTCCEEEEESSCCTTTCEE--CCH-HHH-HHHHHTTCEEEEES-----T-------
T ss_pred -HHHHHHHHHHHHH---HHHHHHHcCCCeEEEeeeecccccch--hhH-HHH-HHHHhCCcEEEEEC-----C-------
Confidence 1123333433332 368888999887433 3344444332 222 344 78999999999986 1
Q ss_pred CCCeeecchHHHHHHHhhcCCCEEEEecc-cCccccCCCc-cccccccccccccchhHHHhcCCCCCcccCChHHHHHHH
Q 005041 171 SSGIFWDNDSLAGLLALELKADLLVLLSD-VEGLYSGPPS-EPNSKLIHTYIRAKHQAEITFGDKSRVGRGGMTAKVNAA 248 (717)
Q Consensus 171 ~~~~~~~sD~~A~~lA~~L~Ad~li~lTD-V~GV~~~dP~-~p~a~~i~~it~~e~~~~~~~gs~~~~~tggM~~Kv~aa 248 (717)
.|..++++|++|+.+|.+|+||+|+|+|| |||||++||+ +|++++|++|+++|+.++ + .++| |+++|
T Consensus 152 ~g~~~~~~D~~Aa~lA~~l~Ad~LiilTD~VdGVy~~dP~~~p~a~~i~~is~~e~~~~---~------~~~m--k~~aa 220 (256)
T 2va1_A 152 TGFPYFTTDSCAAIRAAETESSIILMGKNGVDGVYDSDPKINPNAQFYEHITFNMALTQ---N------LKVM--DATAL 220 (256)
T ss_dssp TSSSSCCHHHHHHHHHHHHTCSEEEEEESSCCSBCSCC--------CBSEEEHHHHHHH---T------CCSS--CHHHH
T ss_pred CCCCCCChhHHHHHHHHhCCCCEEEEeecccCeEEcCCCCCCCCCEEccEEcHHHHHHh---c------cCCc--cHHHH
Confidence 33456899999999999999999999999 9999999994 899999999999998764 1 2788 99999
Q ss_pred HHHHHcCCcEEEEeCCCcchHHHHhcCCcceEEEe
Q 005041 249 YCAACAGIPVVITSGFAMDSIIKVLEGKRVGTLFH 283 (717)
Q Consensus 249 ~~a~~~gi~v~I~~g~~~~~l~~~~tg~~iGT~i~ 283 (717)
..|.++|++++|+|++.|+.+.++++|+..||++.
T Consensus 221 ~~a~~~gv~v~I~~g~~~~~l~~~l~g~~~GT~i~ 255 (256)
T 2va1_A 221 ALCQENNINLLVFNIDKPNAIVDVLEKKNKYTIVS 255 (256)
T ss_dssp HHHHHTTCEEEEEESSSTTHHHHHHTTCSCEEEEE
T ss_pred HHHHHCCCeEEEEeCCCchHHHHHHcCCCCeEEEe
Confidence 99999999999999999999999999988999875
No 72
>2j4j_A Uridylate kinase; transferase, nucleoside monophosphate kinase, UMP kinase, aspartokinase fold, pyrimidine nucleotide synthesis; HET: U5P ACP 4TC; 2.1A {Sulfolobus solfataricus} PDB: 2j4k_A* 2j4l_A*
Probab=99.97 E-value=1.4e-30 Score=264.41 Aligned_cols=220 Identities=17% Similarity=0.175 Sum_probs=165.1
Q ss_pred CeEEEEeCCcccccCCCcccHHHHHHHHHHHHHHHHCCCeEEEEecChhHhhHHH--HhhhhccCCCcccccCccccchH
Q 005041 17 KRVVVKVGTAVVTRSDGRLALGRLGALLEQLKELNSQGFEIILVSSGAVGVGRQR--LRYRKLVNSSLADLQKPQNELDG 94 (717)
Q Consensus 17 ~~iVvKiGGs~l~~~~~~~~~~~l~~l~~~Ia~l~~~G~~vviVhGGg~~~~~~~--l~~~~~~~~~~~~l~~~~~~l~~ 94 (717)
+++|||||||++.++ +.+.+.+++++|+.+++.|+++|||||||+.....+ ++.. +.. .. .+.
T Consensus 1 ~~iViK~GGs~l~~~----~~~~~~~~~~~i~~l~~~g~~vvlV~ggG~~~~~~~~~~~~~-g~~-------~~--~~~- 65 (226)
T 2j4j_A 1 MNIILKISGKFFDED----NVDNLIVLRQSIKELADNGFRVGIVTGGGSTARRYIKLAREI-GIG-------EA--YLD- 65 (226)
T ss_dssp CEEEEEECTHHHHTC----CHHHHHHHHHHHHHHHHTTCEEEEEECCHHHHHHHHHHHHHT-TCC-------HH--HHH-
T ss_pred CeEEEEeccccccCC----CHHHHHHHHHHHHHHHhCCCeEEEEECcchHhchhHHHHHHh-CCC-------cc--cHH-
Confidence 369999999999964 256789999999999999999999999977555431 2111 111 11 111
Q ss_pred HHHHHhchHHHHHHHHHHhhcCCCCcceeEecccccCchhHhhHHHHHHHHHHhCCCeEEecCCCeeeccCCCCCCCCCe
Q 005041 95 KACAAVGQSSLMALYDTLFSQLDVTSSQLLVTDSDFRDEDFRKQLYDTVQSLLDLRVIPIFNENDAVSTRKAPYEDSSGI 174 (717)
Q Consensus 95 ~~~~a~G~~~~~~~~~~~l~~~g~~~~~~~~~~~d~~~~~~~~~~~~~i~~lL~~g~vPVv~g~d~v~~~~~~~~~~~~~ 174 (717)
.+.+++...-..++...|..+|+.. +.. +.+.++++|++|.|||++| +..
T Consensus 66 -~~~~~~~~~~~~l~~~~l~~~g~~~--------~~~-------~~~~i~~ll~~g~ipVi~g--------------g~~ 115 (226)
T 2j4j_A 66 -LLGIWASRLNAYLVMFSLQDLAYMH--------VPQ-------SLEEFIQDWSHGKVVVTGG--------------FQP 115 (226)
T ss_dssp -HHHHHHHHHHHHHHHHHHTTSBCSC--------CCS-------SHHHHHHHHTTSSBEEECC--------------CST
T ss_pred -HHHHHHHHHHHHHHHHHHHHhCCCC--------CcC-------CHHHHHHHHHCCCEEEEcC--------------CCC
Confidence 1223333322233346888888633 111 2466899999999999985 112
Q ss_pred eecchHHHHHHHhhcCCCEEEEecccCccccCCCc-cccccccccccccchhHHHhcCCCCCcccCCh--HHHHHHHHHH
Q 005041 175 FWDNDSLAGLLALELKADLLVLLSDVEGLYSGPPS-EPNSKLIHTYIRAKHQAEITFGDKSRVGRGGM--TAKVNAAYCA 251 (717)
Q Consensus 175 ~~~sD~~A~~lA~~L~Ad~li~lTDV~GV~~~dP~-~p~a~~i~~it~~e~~~~~~~gs~~~~~tggM--~~Kv~aa~~a 251 (717)
++++|++|+.+|.+|+||+|+|+|||||||++||+ +|++++|++|+++|+.+++..+ ...+||| .+|++++..+
T Consensus 116 ~~~~D~~Aa~lA~~l~Ad~liilTdVdGv~~~dP~~~~~a~~i~~i~~~e~~~l~~~~---~~~~ggm~~~~k~~a~~~a 192 (226)
T 2j4j_A 116 GQSTAAVAALVAEASSSKTLVVATNVDGVYEKDPRIYADVKLIPHLTTQDLRKILEGS---QSVQAGTYELLDPLAIKIV 192 (226)
T ss_dssp TSCHHHHHHHHHHHTTCSEEEEEESSSSCBSSCTTTSSSCCBCSEEEHHHHHHHHC-------------CCSCHHHHHHH
T ss_pred CCCcHHHHHHHHHhcCCCEEEEeeccceeeCCCCCCCCCCeEccccCHHHHHHHhhcC---CCCcCCccccchHHHHHHH
Confidence 48999999999999999999999999999999994 9999999999999998765431 2568999 9999999999
Q ss_pred HHcCCcEEEEeCCCcchHHHHhcCCcceEEEec
Q 005041 252 ACAGIPVVITSGFAMDSIIKVLEGKRVGTLFHR 284 (717)
Q Consensus 252 ~~~gi~v~I~~g~~~~~l~~~~tg~~iGT~i~a 284 (717)
+++|++++|+|++.|+.+.+.++|+..||.+.+
T Consensus 193 ~~~gi~v~I~~~~~~~~l~~~~~g~~~GT~i~~ 225 (226)
T 2j4j_A 193 ERSKIRVIVMNYRKLNRIIDILKGEEVSSIIEP 225 (226)
T ss_dssp HHTTCEEEEEEGGGGGGHHHHHTTCSSCEEEEC
T ss_pred HHCCCeEEEEeCCChhHHHHHHcCCCCceEEee
Confidence 999999999999999999999999889999863
No 73
>2ogx_B Molybdenum storage protein subunit beta; open alpha/beta structure, metal binding protein; HET: ATP; 1.60A {Azotobacter vinelandii}
Probab=99.97 E-value=2.4e-30 Score=269.31 Aligned_cols=231 Identities=16% Similarity=0.228 Sum_probs=177.6
Q ss_pred CeEEEEeCCcccccCCCcccHHHHHHHHHHHHHHHHCCCeEEEEecChhHhhHHHHhhhhccCCCcccccCccccchHHH
Q 005041 17 KRVVVKVGTAVVTRSDGRLALGRLGALLEQLKELNSQGFEIILVSSGAVGVGRQRLRYRKLVNSSLADLQKPQNELDGKA 96 (717)
Q Consensus 17 ~~iVvKiGGs~l~~~~~~~~~~~l~~l~~~Ia~l~~~G~~vviVhGGg~~~~~~~l~~~~~~~~~~~~l~~~~~~l~~~~ 96 (717)
+++|||||||++++++ .+.+.+++++|+.+++. +++|||||||+ +++.+.+.. ...+ + ....+...+
T Consensus 37 ~~iVIKlGGs~l~~~~----~~~~~~la~~I~~l~~~-~~vVlVhGGg~-~~~~~~~~~--~~~g---~--~~~~~~~~~ 103 (270)
T 2ogx_B 37 DATVIKIGGQSVIDRG----RAAVYPLVDEIVAARKN-HKLLIGTGAGT-RARHLYSIA--AGLG---L--PAGVLAQLG 103 (270)
T ss_dssp TEEEEEECTTTTGGGC----HHHHHHHHHHHHHHTTT-CEEEEEECCCH-HHHHHHHHH--HHTT---C--CHHHHHHHH
T ss_pred CeEEEEechHHhCCCC----HHHHHHHHHHHHHHhcC-CcEEEEECChH-HHHHHHHHH--HhcC---C--ChHHHHHHH
Confidence 4999999999999853 46789999999999886 99999999999 555433211 1111 1 122345668
Q ss_pred HHHhchHHHHHHHHHHhhcCCCCcceeEecccccCchhHhhHHHHHHHHHHhCCCeEEecCCCeeeccCCCCCCCCC-ee
Q 005041 97 CAAVGQSSLMALYDTLFSQLDVTSSQLLVTDSDFRDEDFRKQLYDTVQSLLDLRVIPIFNENDAVSTRKAPYEDSSG-IF 175 (717)
Q Consensus 97 ~~a~G~~~~~~~~~~~l~~~g~~~~~~~~~~~d~~~~~~~~~~~~~i~~lL~~g~vPVv~g~d~v~~~~~~~~~~~~-~~ 175 (717)
+.++|+..++ ++..|..+|++ .++..|+ +.++++|++|.|||++|++.+....-. ...+. .+
T Consensus 104 ~~a~G~~~l~--~~~~l~~~G~~----~vt~~d~----------~~i~~lL~~g~ipVi~g~~g~~~~~~~-~~~g~~~~ 166 (270)
T 2ogx_B 104 SSVADQNAAM--LGQLLAKHGIP----VVGGAGL----------SAVPLSLAEVNAVVFSGMPPYKLWMRP-AAEGVIPP 166 (270)
T ss_dssp HHHHHHHHHH--HHHHHGGGTCC----BCCSSTT----------CHHHHHCTTCCEEEEECSCTTGGGCCC-CSSSSSCS
T ss_pred HHHHHHHHHH--HHHHHHhcCCc----eecHhhH----------HHHHHHHhCCCEEEEeCCccccccccc-cccccCCC
Confidence 8899988765 36778778865 3444443 248999999999999986554431100 00122 34
Q ss_pred ecchHHHHHHHhhcCCCEEEEecccCccccCCC-ccccccccccccccchhHHHhcCCCCCcccCChHHHHHHHHHHHHc
Q 005041 176 WDNDSLAGLLALELKADLLVLLSDVEGLYSGPP-SEPNSKLIHTYIRAKHQAEITFGDKSRVGRGGMTAKVNAAYCAACA 254 (717)
Q Consensus 176 ~~sD~~A~~lA~~L~Ad~li~lTDV~GV~~~dP-~~p~a~~i~~it~~e~~~~~~~gs~~~~~tggM~~Kv~aa~~a~~~ 254 (717)
+|+|++|+.+|.+|+||+|+|+|||||||++|| .+|++++|++|+++|+.++...+ ....|||.+|+++|. .
T Consensus 167 ~~~D~~Aa~lA~~l~Ad~Li~lTDVdGvy~~dP~~~~~a~~i~~i~~~e~~~~~~~g---~~~~ggm~~kl~aa~----~ 239 (270)
T 2ogx_B 167 YRTDAGCFLLAEQFGCKQMIFVKDEDGLYTANPKTSKDATFIPRISVDEMKAKGLHD---SILEFPVLDLLQSAQ----H 239 (270)
T ss_dssp SCHHHHHHHHHHHHTCSEEEEEESSSSEESSCSSSCTTCCEESEEEHHHHHHTTCCC---TTSCHHHHHHHHHCS----S
T ss_pred CCcHHHHHHHHHhcCCCEEEEEeCCCcccCCCCCCCCCCeEcceeCHHHHHHHhcCC---CcccHHHHHHHHHhh----c
Confidence 999999999999999999999999999999999 59999999999999988765433 134589999999885 3
Q ss_pred CCcEEEEeCCCcchHHHHhcCCcceEEEec
Q 005041 255 GIPVVITSGFAMDSIIKVLEGKRVGTLFHR 284 (717)
Q Consensus 255 gi~v~I~~g~~~~~l~~~~tg~~iGT~i~a 284 (717)
+++++|+|++.|+.+.+.++|+..||++.+
T Consensus 240 ~~~v~I~~g~~~~~l~~~l~g~~~GT~i~~ 269 (270)
T 2ogx_B 240 VREVQVVNGLVPGNLTRALAGEHVGTIITA 269 (270)
T ss_dssp CCEEEEEETTSTTHHHHHHTTCCCSEEEEC
T ss_pred CCcEEEEeCCCchHHHHHHcCCCCCeEecC
Confidence 569999999999999999999999999864
No 74
>4a7w_A Uridylate kinase; transferase; HET: GTP; 1.80A {Helicobacter pylori} PDB: 4a7x_A*
Probab=99.97 E-value=6e-30 Score=261.38 Aligned_cols=230 Identities=17% Similarity=0.249 Sum_probs=169.6
Q ss_pred CCeEEEEeCCcccccCC-CcccHHHHHHHHHHHHHHHHCCCeEEEEecChhHhhHHHHhhhhccCCCcccccCccccchH
Q 005041 16 VKRVVVKVGTAVVTRSD-GRLALGRLGALLEQLKELNSQGFEIILVSSGAVGVGRQRLRYRKLVNSSLADLQKPQNELDG 94 (717)
Q Consensus 16 ~~~iVvKiGGs~l~~~~-~~~~~~~l~~l~~~Ia~l~~~G~~vviVhGGg~~~~~~~l~~~~~~~~~~~~l~~~~~~l~~ 94 (717)
++++|||+|||+++++. ..++.+.+.+++++|+.+++.|+++|||||||+.+.... ....+. ++..+....
T Consensus 7 ~k~iViKiGGs~l~~~~~~~~~~~~i~~~a~~I~~l~~~G~~vvlV~gGG~~~~g~~-~~~~G~------~~~~~~~~~- 78 (240)
T 4a7w_A 7 NKRVLVKFSGEALAGDNQFGIDIHVLDHIAKEIKSLVENDIEVGIVIGGGNIIRGVS-AAQGGI------IRRTSGDYM- 78 (240)
T ss_dssp CCEEEEEECGGGGGTTSSSSCCHHHHHHHHHHHHHHHHTTCEEEEEECCTTTC----------C------CCHHHHHHH-
T ss_pred CCEEEEEECHHHcCCCCCCCCCHHHHHHHHHHHHHHHHCCCcEEEEECCcHHHhHhH-HHhcCC------CCCCCHHHH-
Confidence 57999999999999743 368888999999999999999999999999977543321 111110 111110000
Q ss_pred HHHHHhchHHHHHHHHHHhhcCCCCcceeEecccccCchhHhhHHHHHHHHHHhCCCeEEecCCCeeeccCCCCCCCCCe
Q 005041 95 KACAAVGQSSLMALYDTLFSQLDVTSSQLLVTDSDFRDEDFRKQLYDTVQSLLDLRVIPIFNENDAVSTRKAPYEDSSGI 174 (717)
Q Consensus 95 ~~~~a~G~~~~~~~~~~~l~~~g~~~~~~~~~~~d~~~~~~~~~~~~~i~~lL~~g~vPVv~g~d~v~~~~~~~~~~~~~ 174 (717)
..+++.++. .++...|..+|+++. .++..|+.....+ .+.+.+.++|++|.|||++|. .+..
T Consensus 79 ~~la~~~n~---~l~~~~l~~~G~~av--~lt~~d~~~~~~~-~~~~~i~~lL~~g~ipVi~~~------------~g~~ 140 (240)
T 4a7w_A 79 GMLATVINA---VAMQEALEHIGLDTR--VQSAIEIKEICES-YIYRKAIRHLEKGRVVIFGAG------------TGNP 140 (240)
T ss_dssp HHHHHHHHH---HHHHHHHHHTTCCEE--EEESSCCTTTSEE-CCHHHHHHHHHTTCEEEEEST------------TSCT
T ss_pred HHHHHHHHH---HHHHHHHHHCCCCEE--EecHHHcCcccCc-CcHHHHHHHHHCCCEEEEeCC------------CCCC
Confidence 112223222 356688999998873 4444443322111 135678899999999999861 2233
Q ss_pred eecchHHHHHHHhhcCCCEEEEecccCccccCCCc-cccccccccccccchhHHHhcCCCCCcccCChHHHHHHHHHHHH
Q 005041 175 FWDNDSLAGLLALELKADLLVLLSDVEGLYSGPPS-EPNSKLIHTYIRAKHQAEITFGDKSRVGRGGMTAKVNAAYCAAC 253 (717)
Q Consensus 175 ~~~sD~~A~~lA~~L~Ad~li~lTDV~GV~~~dP~-~p~a~~i~~it~~e~~~~~~~gs~~~~~tggM~~Kv~aa~~a~~ 253 (717)
++++|++|+.+|.+|+||+|+++|||||||++||+ +|++++|++|+++|+.+ . +.++| |++++..|++
T Consensus 141 ~~~~D~~Aa~lA~~l~Ad~li~lTdVdGvy~~dp~~~p~a~~i~~i~~~e~~~---~------g~~~m--~~~a~~~a~~ 209 (240)
T 4a7w_A 141 FFTTDTAATLRAIEIGSDLIIKATKVDGIYDKDPNKFKDAKKLDTLSYNDALI---G------DIEVM--DDTAISLAKD 209 (240)
T ss_dssp TSCHHHHHHHHHHHTTCSEEEEEESSSSEESSCTTTCTTCCEESEECHHHHHH---S------SCCSS--CHHHHHHHHH
T ss_pred CCChHHHHHHHHHHcCCCEEEEccCCCceECCCCCCCCCCeEcceecHHHHHh---c------Ccccc--HHHHHHHHHH
Confidence 69999999999999999999999999999999995 99999999999988764 1 25777 6799999999
Q ss_pred cCCcEEEEeCCCcchHHHHhcC-CcceEEE
Q 005041 254 AGIPVVITSGFAMDSIIKVLEG-KRVGTLF 282 (717)
Q Consensus 254 ~gi~v~I~~g~~~~~l~~~~tg-~~iGT~i 282 (717)
+|++++|+|++.|+++...+.| +.+||.+
T Consensus 210 ~gv~v~I~~g~~~~~l~~~l~g~~g~GT~i 239 (240)
T 4a7w_A 210 NKLPIVVCNMFKKGNLLQVIKHQQGVFSMV 239 (240)
T ss_dssp TTCCEEEEESSSTTHHHHHHHHSCSSCEEE
T ss_pred CCCeEEEECCCCccHHHHHHCCCCCCceee
Confidence 9999999999999999776554 5689976
No 75
>1ybd_A Uridylate kinase; alpha/beta/alpha fold, hexamer, structural genomics, structure initiative, PSI; 2.60A {Neisseria meningitidis} SCOP: c.73.1.3
Probab=99.97 E-value=1.2e-29 Score=260.03 Aligned_cols=230 Identities=16% Similarity=0.222 Sum_probs=171.2
Q ss_pred cCCeEEEEeCCcccccCCC-cccHHHHHHHHHHHHHHHHCCCeEEEEecChhHhhHHHHhhhhccCCCcccccCccccch
Q 005041 15 NVKRVVVKVGTAVVTRSDG-RLALGRLGALLEQLKELNSQGFEIILVSSGAVGVGRQRLRYRKLVNSSLADLQKPQNELD 93 (717)
Q Consensus 15 ~~~~iVvKiGGs~l~~~~~-~~~~~~l~~l~~~Ia~l~~~G~~vviVhGGg~~~~~~~l~~~~~~~~~~~~l~~~~~~l~ 93 (717)
+++++|||||||+++++++ .++.+++.+++++|+.+++.|+++|||||||.......+... +.... ..
T Consensus 6 ~~~~iViK~GGs~l~~~~~~~~~~~~~~~~~~~i~~l~~~g~~vviV~GgG~~~~g~~~~~~-~~~~~---~~------- 74 (239)
T 1ybd_A 6 KYKRVLLKLSGESLMGSDPFGINHDTIVQTVGEIAEVVKMGVQVGIVVGGGNIFRGVSAQAG-SMDRA---TA------- 74 (239)
T ss_dssp SCSEEEEEECGGGGGTTSSSSCCHHHHHHHHHHHHHHHHTTCEEEEEECCHHHHHHHHHHHT-TSCHH---HH-------
T ss_pred CCCEEEEEEchHHhCCCCCCCCCHHHHHHHHHHHHHHHHCCCeEEEEECCcHHHhchhHHHc-CCCCc---cH-------
Confidence 3588999999999998643 577888999999999999999999999999774433211111 11100 00
Q ss_pred HHHHHHhchHHHHHHHHHHhhcCCCCcceeEe-cccccCchhHhhHHHHHHHHHHhCCCeEEecCCCeeeccCCCCCCCC
Q 005041 94 GKACAAVGQSSLMALYDTLFSQLDVTSSQLLV-TDSDFRDEDFRKQLYDTVQSLLDLRVIPIFNENDAVSTRKAPYEDSS 172 (717)
Q Consensus 94 ~~~~~a~G~~~~~~~~~~~l~~~g~~~~~~~~-~~~d~~~~~~~~~~~~~i~~lL~~g~vPVv~g~d~v~~~~~~~~~~~ 172 (717)
..+.+++...-..++...|..+|+++..+.. +..++.+ .+. +.+.+ ++|+.|.|||++|. .+
T Consensus 75 -~~~~~~~~~~~~~l~~~~l~~~G~~~~~~~~~~~~~~~~--~~~-~~~~~-~ll~~g~ipVv~g~------------~g 137 (239)
T 1ybd_A 75 -DYMGMMATVMNALALKDAFETLGIKARVQSALSMQQIAE--TYA-RPKAI-QYLEEGKVVIFAAG------------TG 137 (239)
T ss_dssp -HHHHHHHHHHHHHHHHHHHHHTTCCEEEEESSCBSSSCE--ECC-HHHHH-HHHHTTCEEEEEST------------TS
T ss_pred -HHHHHHHHHHHHHHHHHHHHHcCCCeEEEeeeccccccc--chh-HHHHH-HHHhCCcEEEEECC------------cc
Confidence 0122233322223346888889987753321 1122211 121 23556 78999999999751 22
Q ss_pred CeeecchHHHHHHHhhcCCCEEEEecccCccccCCCc-cccccccccccccchhHHHhcCCCCCcccCChHHHHHHHHHH
Q 005041 173 GIFWDNDSLAGLLALELKADLLVLLSDVEGLYSGPPS-EPNSKLIHTYIRAKHQAEITFGDKSRVGRGGMTAKVNAAYCA 251 (717)
Q Consensus 173 ~~~~~sD~~A~~lA~~L~Ad~li~lTDV~GV~~~dP~-~p~a~~i~~it~~e~~~~~~~gs~~~~~tggM~~Kv~aa~~a 251 (717)
..++|+|++|+.+|.+|+||+|+|+|||||||++||+ +|++++|++|+++|+.++ + .++| |++++..|
T Consensus 138 ~~~~~~D~~Aa~lA~~l~Ad~liilTdVdGvy~~dp~~~p~a~~i~~i~~~e~~~~---g------~~~m--~~~a~~~a 206 (239)
T 1ybd_A 138 NPFFTTDTAAALRGAEMNCDVMLKATNVDGVYTADPKKDPSATRYETITFDEALLK---N------LKVM--DATAFALC 206 (239)
T ss_dssp STTCCHHHHHHHHHHHTTCSEEEEECSSSSCBSSCGGGCTTCCBCSEEEHHHHHHT---T------CCSS--CHHHHHHH
T ss_pred CCCCCcHHHHHHHHHhcCCCEEEEeeCCCccCCCCCCCCCCCeEccccCHHHHHHh---c------cccc--CHHHHHHH
Confidence 3459999999999999999999999999999999995 999999999999988652 2 4677 77899999
Q ss_pred HHcCCcEEEEeCCCcchHHHHhcCCcceEEEe
Q 005041 252 ACAGIPVVITSGFAMDSIIKVLEGKRVGTLFH 283 (717)
Q Consensus 252 ~~~gi~v~I~~g~~~~~l~~~~tg~~iGT~i~ 283 (717)
.++|++++|+|++.|+.+.+.++|+..||++.
T Consensus 207 ~~~gv~v~I~~~~~~~~l~~~l~g~~~GT~i~ 238 (239)
T 1ybd_A 207 RERKLNIVVFGIAKEGSLKRVITGEDEGTLVH 238 (239)
T ss_dssp HHTTCCEEEECTTSTTHHHHHHHTCSCSEEEE
T ss_pred HHcCCcEEEEeCCChhHHHHHHcCCCCCeEEc
Confidence 99999999999999999999999988999885
No 76
>1z9d_A Uridylate kinase, UK, UMP kinase; structural genomics, protein structure initiative, NYSGXRC, PYRH, putative uridylate kinase, PSI; 2.80A {Streptococcus pyogenes} SCOP: c.73.1.3
Probab=99.97 E-value=1.6e-29 Score=260.82 Aligned_cols=231 Identities=16% Similarity=0.208 Sum_probs=173.5
Q ss_pred CCeEEEEeCCcccccCC-CcccHHHHHHHHHHHHHHHHCCCeEEEEecChhHhhHHHHhhhhccCCCcccccCccccchH
Q 005041 16 VKRVVVKVGTAVVTRSD-GRLALGRLGALLEQLKELNSQGFEIILVSSGAVGVGRQRLRYRKLVNSSLADLQKPQNELDG 94 (717)
Q Consensus 16 ~~~iVvKiGGs~l~~~~-~~~~~~~l~~l~~~Ia~l~~~G~~vviVhGGg~~~~~~~l~~~~~~~~~~~~l~~~~~~l~~ 94 (717)
++++|||||||++++++ ..++.+++.+++++|+.+++.|+++|||||||+......++.. +....+.+ . .
T Consensus 7 ~k~iViKlGGs~l~~~~~~~~~~~~~~~~a~~I~~l~~~G~~vVlVhGgG~~~~g~~~~~l-g~~~~~~~----~----~ 77 (252)
T 1z9d_A 7 YQRILIKLSGEALAGEKGVGIDIPTVQAIAKEIAEVHVSGVQIALVIGGGNLWRGEPAADA-GMDRVQAD----Y----T 77 (252)
T ss_dssp CSEEEEEECGGGGTCSSSSSCCHHHHHHHHHHHHHHHTTTCEEEEEECCTTTCCHHHHHHH-TCCHHHHH----H----H
T ss_pred CCEEEEEEchHHccCCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEECCChHhccchHHHc-CCCCCchH----H----H
Confidence 57899999999999753 2577888999999999999999999999999774433212211 22111100 0 0
Q ss_pred HHHHHhchHHHHHHHHHHhhcCCCCcceeEec-ccccCchhHhhHHHHHHHHHHhCCCeEEecCCCeeeccCCCCCCCCC
Q 005041 95 KACAAVGQSSLMALYDTLFSQLDVTSSQLLVT-DSDFRDEDFRKQLYDTVQSLLDLRVIPIFNENDAVSTRKAPYEDSSG 173 (717)
Q Consensus 95 ~~~~a~G~~~~~~~~~~~l~~~g~~~~~~~~~-~~d~~~~~~~~~~~~~i~~lL~~g~vPVv~g~d~v~~~~~~~~~~~~ 173 (717)
.++...++. .++...|.+.|+++..+... ..++.+ .+. +.+. .++|+.|.|||++| . .+.
T Consensus 78 ~~~~~~~~~---~ll~~al~~~G~~~~~~~~~~~~~~~~--~~~-~~~~-~~lL~~g~IpVi~~-----~-------~g~ 138 (252)
T 1z9d_A 78 GMLGTVMNA---LVMADSLQHYGVDTRVQTAIPMQNVAE--PYI-RGRA-LRHLEKNRIVVFGA-----G-------IGS 138 (252)
T ss_dssp HHHHHHHHH---HHHHHHHHTTTCCEEEEESSCBTTTBE--ECC-HHHH-HHHHHTTCEEEEES-----T-------TSC
T ss_pred HHHHHHHHH---HHHHHHHHHcCCCeEEEeccccccccC--cch-HHHH-HHHHhCCCEEEEeC-----C-------cCC
Confidence 122222222 23568888999877544322 222222 132 2344 89999999999986 1 223
Q ss_pred eeecchHHHHHHHhhcCCCEEEEec-ccCccccCCCc-cccccccccccccchhHHHhcCCCCCcccCChHHHHHHHHHH
Q 005041 174 IFWDNDSLAGLLALELKADLLVLLS-DVEGLYSGPPS-EPNSKLIHTYIRAKHQAEITFGDKSRVGRGGMTAKVNAAYCA 251 (717)
Q Consensus 174 ~~~~sD~~A~~lA~~L~Ad~li~lT-DV~GV~~~dP~-~p~a~~i~~it~~e~~~~~~~gs~~~~~tggM~~Kv~aa~~a 251 (717)
.++|+|++|+.+|.+|+||+|+|+| ||||||++||+ +|++++|++|+++|+.+ . ..++| |++++..|
T Consensus 139 ~~~~~D~~Aa~lA~~l~Ad~LiilT~DVdGvy~~dP~~~~~a~~i~~i~~~e~~~---~------~~~~m--k~~aa~~a 207 (252)
T 1z9d_A 139 PYFSTDTTAALRAAEIEADAILMAKNGVDGVYNADPKKDANAVKFDELTHGEVIK---R------GLKIM--DATASTLS 207 (252)
T ss_dssp TTCCHHHHHHHHHHHTTCSEEEEEESSCCSCBSSCTTTCTTCCBCSEEEHHHHHT---T------TCCCS--CHHHHHHH
T ss_pred CCCChHHHHHHHHHhcCCCEEEEecCCCCeeeCCCCCCCCCCeEeeEecHHHHHh---c------ccccc--CHHHHHHH
Confidence 3599999999999999999999999 99999999994 99999999999988764 2 24788 88999999
Q ss_pred HHcCCcEEEEeCCCcchHHHHhcCCcceEEEecC
Q 005041 252 ACAGIPVVITSGFAMDSIIKVLEGKRVGTLFHRD 285 (717)
Q Consensus 252 ~~~gi~v~I~~g~~~~~l~~~~tg~~iGT~i~a~ 285 (717)
.++|++++|+|++.|+.+.+.++|+..||++.+.
T Consensus 208 ~~~gv~v~I~~g~~~~~l~~~l~g~~~GT~i~~~ 241 (252)
T 1z9d_A 208 MDNDIDLVVFNMNEAGNIQRVVFGEHIGTTVSNK 241 (252)
T ss_dssp HHTTCEEEEEETTSTTHHHHHHTTCCCSEEEECC
T ss_pred HHcCCeEEEEeCCCchHHHHHHcCCCCceEEecC
Confidence 9999999999999999999999998899999865
No 77
>3ek6_A Uridylate kinase; UMPK unique GTP B site, allosteric regulation, ATP-binding, nucleotid binding, pyrimidine biosynthesis, transferase; 2.34A {Xanthomonas campestris PV} SCOP: c.73.1.0 PDB: 3ek5_A
Probab=99.97 E-value=7.6e-30 Score=260.97 Aligned_cols=230 Identities=19% Similarity=0.218 Sum_probs=170.4
Q ss_pred cCCeEEEEeCCcccccCCC-cccHHHHHHHHHHHHHHHHCCCeEEEEecChhH-hhHHHHhhhhccCCCcccccCccccc
Q 005041 15 NVKRVVVKVGTAVVTRSDG-RLALGRLGALLEQLKELNSQGFEIILVSSGAVG-VGRQRLRYRKLVNSSLADLQKPQNEL 92 (717)
Q Consensus 15 ~~~~iVvKiGGs~l~~~~~-~~~~~~l~~l~~~Ia~l~~~G~~vviVhGGg~~-~~~~~l~~~~~~~~~~~~l~~~~~~l 92 (717)
.++++|||+|||+++++++ .++.+.+.+++++|+.+++.|+++|||||||.. .+..+ ...+. +... .
T Consensus 8 ~~~riViKlGGs~l~~~~~~~~~~~~i~~la~~i~~l~~~G~~vviV~gGG~~~~~~~~--~~~g~-------~~~~--~ 76 (243)
T 3ek6_A 8 SYRRILLKLSGEALMGDGDYGIDPKVINRLAHEVIEAQQAGAQVALVIGGGNIFRGAGL--AASGM-------DRVT--G 76 (243)
T ss_dssp SCSEEEEEECGGGGTTTSSSSCCHHHHHHHHHHHHHHHHTTCEEEEEECSTTTSCSTTT--SCSSS-------CHHH--H
T ss_pred cCcEEEEEEchhhccCCCCCCCCHHHHHHHHHHHHHHHHCCCeEEEEECCCHHHHHHHH--HHcCC-------CCCC--H
Confidence 3689999999999998764 688899999999999999999999999998652 22211 11111 1000 0
Q ss_pred hHHHHHHhchHHHHH-HHHHHhhcCCCCcceeEecccccCchhHhhHHHHHHHHHHhCCCeEEecCCCeeeccCCCCCCC
Q 005041 93 DGKACAAVGQSSLMA-LYDTLFSQLDVTSSQLLVTDSDFRDEDFRKQLYDTVQSLLDLRVIPIFNENDAVSTRKAPYEDS 171 (717)
Q Consensus 93 ~~~~~~a~G~~~~~~-~~~~~l~~~g~~~~~~~~~~~d~~~~~~~~~~~~~i~~lL~~g~vPVv~g~d~v~~~~~~~~~~ 171 (717)
...++.+. .+.. ++..+|.+.|+++..+...+.... ...+ +.+.+.++|++|.|||++| . .
T Consensus 77 d~~g~l~t---~~N~~~l~~al~~~G~~a~~~~~~~~~~v-~~~~--~~~~~~~lL~~g~IpVv~~-----~-------~ 138 (243)
T 3ek6_A 77 DHMGMLAT---VINALAMQDALEKLGAKVRVMSAIKINDV-CEDF--IRRRAIRHLEKGRIAIFAA-----G-------T 138 (243)
T ss_dssp HHHHHHHH---HHHHHHHHHHHHHTTCCEEEEESSCBTTT-BEEC--CHHHHHHHHHTTCEEEEES-----T-------T
T ss_pred HHHHHHHH---HHHHHHHHHHHHHcCCCeEEechhhcCcc-cCcC--CHHHHHHHHHCCcEEEEEC-----C-------C
Confidence 11122111 1222 356788888876543321111000 0001 2467889999999999986 1 2
Q ss_pred CCeeecchHHHHHHHhhcCCCEEEEecccCccccCCCc-cccccccccccccchhHHHhcCCCCCcccCChHHHHHHHHH
Q 005041 172 SGIFWDNDSLAGLLALELKADLLVLLSDVEGLYSGPPS-EPNSKLIHTYIRAKHQAEITFGDKSRVGRGGMTAKVNAAYC 250 (717)
Q Consensus 172 ~~~~~~sD~~A~~lA~~L~Ad~li~lTDV~GV~~~dP~-~p~a~~i~~it~~e~~~~~~~gs~~~~~tggM~~Kv~aa~~ 250 (717)
|..++++|++|+.+|.+|+||+|+++|||||||++||+ +|++++|++|+++|+.+ .+ .++| |++++..
T Consensus 139 g~~~~~~D~~Aa~lA~~l~Ad~li~lTdVdGvy~~dp~~~p~a~~i~~i~~~e~~~---~g------~~~~--~~~a~~~ 207 (243)
T 3ek6_A 139 GNPFFTTDSGAALRAIEIGADLLLKATKVDGVYDKDPKKHSDAVRYDSLTYDEVIM---QG------LEVM--DTAAFAL 207 (243)
T ss_dssp SSTTCCHHHHHHHHHHHHTCSEEEEECSSSSCBSSCGGGCTTCCBCSEECHHHHHH---HT------CCSS--CHHHHHH
T ss_pred CCCcCChHHHHHHHHHHcCCCEEEEEeCCCccCCCCCCCCCCceecccccHHHHHh---CC------chhH--HHHHHHH
Confidence 33469999999999999999999999999999999995 99999999999988764 12 2445 7899999
Q ss_pred HHHcCCcEEEEeCCCcchHHHHhcCCcceEEEec
Q 005041 251 AACAGIPVVITSGFAMDSIIKVLEGKRVGTLFHR 284 (717)
Q Consensus 251 a~~~gi~v~I~~g~~~~~l~~~~tg~~iGT~i~a 284 (717)
|+++|++++|+|++.|+.+.++++|+..||++.+
T Consensus 208 a~~~gv~v~I~~g~~~~~l~~~l~g~~~GT~i~~ 241 (243)
T 3ek6_A 208 ARDSDLPLRIFGMSEPGVLLRILHGAQIGTLVQG 241 (243)
T ss_dssp HHHTTCCEEEECCCSTTHHHHHHTTCCCSEEECC
T ss_pred HHHCCCeEEEEcCCCccHHHHHHCCCCCceEEee
Confidence 9999999999999999999999999999999865
No 78
>2a1f_A Uridylate kinase; PYRH, structural genomics, PSI, protein ST initiative, NEW YORK SGX research center for structural GEN nysgxrc; 2.10A {Haemophilus influenzae} SCOP: c.73.1.3 PDB: 2bne_A* 2bnf_A* 2v4y_A* 2bnd_A*
Probab=99.97 E-value=1.5e-29 Score=260.35 Aligned_cols=231 Identities=19% Similarity=0.239 Sum_probs=168.3
Q ss_pred CCeEEEEeCCcccccCC-CcccHHHHHHHHHHHHHHHHCCCeEEEEecChhHhhHHHHhhhhccCCCcccccCccccchH
Q 005041 16 VKRVVVKVGTAVVTRSD-GRLALGRLGALLEQLKELNSQGFEIILVSSGAVGVGRQRLRYRKLVNSSLADLQKPQNELDG 94 (717)
Q Consensus 16 ~~~iVvKiGGs~l~~~~-~~~~~~~l~~l~~~Ia~l~~~G~~vviVhGGg~~~~~~~l~~~~~~~~~~~~l~~~~~~l~~ 94 (717)
++++|||||||++++++ ..++.+++.+++++|+.+++.|+++|||||||.......+... +......
T Consensus 8 ~k~iViKlGGs~l~~~~~~~~~~~~i~~~a~~I~~l~~~G~~vVlVhGgG~~~~~~~~~~~-g~~~~~~----------- 75 (247)
T 2a1f_A 8 YKRILLKLSGEALQGEDGLGIDPAILDRMAVEIKELVEMGVEVSVVLGGGNLFRGAKLAKA-GMNRVVG----------- 75 (247)
T ss_dssp CSEEEEEECGGGGCCTTSSSCCHHHHHHHHHHHHHHHTTTCEEEEEECCTTTCCCHHHHHT-TCCHHHH-----------
T ss_pred ccEEEEEEChhhhCCCCCCCCCHHHHHHHHHHHHHHHHCCCeEEEEECCChHhcchhHHHc-CCCCCcH-----------
Confidence 57899999999999753 2577888999999999999999999999999775433212111 1110000
Q ss_pred HHHHHhchHHHHHHHHHHhhcCCCCcceeEec-ccccCchhHhhHHHHHHHHHHhCCCeEEecCCCeeeccCCCCCCCCC
Q 005041 95 KACAAVGQSSLMALYDTLFSQLDVTSSQLLVT-DSDFRDEDFRKQLYDTVQSLLDLRVIPIFNENDAVSTRKAPYEDSSG 173 (717)
Q Consensus 95 ~~~~a~G~~~~~~~~~~~l~~~g~~~~~~~~~-~~d~~~~~~~~~~~~~i~~lL~~g~vPVv~g~d~v~~~~~~~~~~~~ 173 (717)
..+.+++...-..++...|..+|+++..+... ..++.+ .+.+ .+ ++++|+.|.|||++| . .+.
T Consensus 76 d~~~~~~~~~~~~ll~~~l~~~G~~~~~~~~~~~~~~~~--~~~~-~~-~~~ll~~g~ipVi~~-----~-------~g~ 139 (247)
T 2a1f_A 76 DHMGMLATVMNGLAMRDSLFRADVNAKLMSAFQLNGICD--TYNW-SE-AIKMLREKRVVIFSA-----G-------TGN 139 (247)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTTCCEEEEESSCCTTTSE--ECCH-HH-HHHHHHTTCEEEEES-----T-------TSC
T ss_pred HHHHHHHHHHHHHHHHHHHHHcCCCeEEecccccccccc--hhhH-HH-HHHHHhCCCEEEEeC-----C-------cCC
Confidence 11223333222233568888999877544322 122221 1222 33 479999999999986 1 223
Q ss_pred eeecchHHHHHHHhhcCCCEEEEecccCccccCCCc-cccccccccccccchhHHHhcCCCCCcccCChHHHHHHHHHHH
Q 005041 174 IFWDNDSLAGLLALELKADLLVLLSDVEGLYSGPPS-EPNSKLIHTYIRAKHQAEITFGDKSRVGRGGMTAKVNAAYCAA 252 (717)
Q Consensus 174 ~~~~sD~~A~~lA~~L~Ad~li~lTDV~GV~~~dP~-~p~a~~i~~it~~e~~~~~~~gs~~~~~tggM~~Kv~aa~~a~ 252 (717)
.++|+|++|+.+|.+|+||+|+|+|||||||++||+ +|++++|++|+++|+.++ + .++| |++++..|.
T Consensus 140 ~~~~~D~~Aa~lA~~l~Ad~liilTDVdGvy~~dP~~~p~a~~i~~i~~~e~~~~---g------~~~m--~~~aa~~a~ 208 (247)
T 2a1f_A 140 PFFTTDSTACLRGIEIEADVVLKATKVDGVYDCDPAKNPDAKLYKNLSYAEVIDK---E------LKVM--DLSAFTLAR 208 (247)
T ss_dssp SSCCHHHHHHHHHHHTTCSEEEEEESSSSCBCC-------CCBCSEECHHHHHHT---T------CCSS--CHHHHHHHH
T ss_pred CCCCcHHHHHHHHHhCCCCEEEEEeCCCcccCCCCCCCCCCeEcccCCHHHHHHc---C------cccc--CHHHHHHHH
Confidence 459999999999999999999999999999999995 999999999999988752 2 4677 778999999
Q ss_pred HcCCcEEEEeCCCcchHHHHhcCCcceEEEecC
Q 005041 253 CAGIPVVITSGFAMDSIIKVLEGKRVGTLFHRD 285 (717)
Q Consensus 253 ~~gi~v~I~~g~~~~~l~~~~tg~~iGT~i~a~ 285 (717)
++|++++|+|++.|+.+.+.++|+..||++...
T Consensus 209 ~~gv~v~I~~~~~~~~l~~~l~g~~~GT~~~~~ 241 (247)
T 2a1f_A 209 DHGMPIRVFNMGKPGALRQVVTGTEEGTTICEG 241 (247)
T ss_dssp HHTCCEEEEETTSTTHHHHHHTCSCSSEEECCC
T ss_pred HcCCcEEEEeCCCchHHHHHHcCCCCceEEeec
Confidence 999999999999999999999999999999876
No 79
>2ogx_A Molybdenum storage protein subunit alpha; open alpha/beta structure, metal binding protein; HET: ATP; 1.60A {Azotobacter vinelandii}
Probab=99.97 E-value=8.4e-30 Score=265.69 Aligned_cols=225 Identities=17% Similarity=0.196 Sum_probs=168.2
Q ss_pred eEEEEeCCcccccCCCcccHHHHHHHHHHHHHHHHCCCeEEEEecChhHhhHHHHhhhhccCCCcccccCccccchHHHH
Q 005041 18 RVVVKVGTAVVTRSDGRLALGRLGALLEQLKELNSQGFEIILVSSGAVGVGRQRLRYRKLVNSSLADLQKPQNELDGKAC 97 (717)
Q Consensus 18 ~iVvKiGGs~l~~~~~~~~~~~l~~l~~~Ia~l~~~G~~vviVhGGg~~~~~~~l~~~~~~~~~~~~l~~~~~~l~~~~~ 97 (717)
++||||||| +.+++ .+.+.+++++|+.++ .|+++|||||||++. +..++.. .. .+++. .++
T Consensus 41 ~iVIKiGGs-l~~~~----~~~l~~l~~~I~~l~-~G~~vVlV~GGg~~~-~~~~~~~--~~---~gl~~-------~~l 101 (276)
T 2ogx_A 41 LQVVKIGGR-VMDRG----ADAILPLVEELRKLL-PEHRLLILTGAGVRA-RHVFSVG--LD---LGLPV-------GSL 101 (276)
T ss_dssp EEEEEECHH-HHTTT----HHHHHHHHHHHHHHT-TTCEEEEEECCTHHH-HHHHHHH--HH---TTCCH-------HHH
T ss_pred eEEEEEChh-hcCCC----HHHHHHHHHHHHHHh-CCCeEEEEECcHHHH-HHHHhcc--Cc---CCCCH-------HHH
Confidence 899999999 88753 456899999999998 799999999998654 4444421 11 11211 122
Q ss_pred HHhchHH--H-HHHHHHHhhcCCCCcceeEecccccCchhHhhHHHHHHHHHHhCCCeEEecCCCeeeccCCCCCCCCC-
Q 005041 98 AAVGQSS--L-MALYDTLFSQLDVTSSQLLVTDSDFRDEDFRKQLYDTVQSLLDLRVIPIFNENDAVSTRKAPYEDSSG- 173 (717)
Q Consensus 98 ~a~G~~~--~-~~~~~~~l~~~g~~~~~~~~~~~d~~~~~~~~~~~~~i~~lL~~g~vPVv~g~d~v~~~~~~~~~~~~- 173 (717)
..+++.. + ..+++.++...|++.. .+.++.+.++++|++|.|||++||+.+...+. +.+.
T Consensus 102 ~~v~~~~~~~n~~l~~~ll~~~g~~~v-------------~~~~~~~~i~~lL~~g~IpVi~~~~~~~~~e~---~G~~~ 165 (276)
T 2ogx_A 102 APLAASEAGQNGHILAAMLASEGVSYV-------------EHPTVADQLAIHLSATRAVVGSAFPPYHHHEF---PGSRI 165 (276)
T ss_dssp HHHHHHHHHHHHHHHHHHHGGGTCCBC-------------CHHHHHHHHHHHHHHSSEEEEESSCTTGGGCC---SSSSS
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCCCcc-------------cccChHHHHHHHHhCCCEEEEcCCcccccccc---cCCcC
Confidence 3333221 1 1233344545665321 12235688999999999999999765442110 0122
Q ss_pred eeecchHHHHHHHhhcCCCEEEEecccCccccCCCc---cccccccccccccchhHHHhcCCCCCcccCChHHHHHHHHH
Q 005041 174 IFWDNDSLAGLLALELKADLLVLLSDVEGLYSGPPS---EPNSKLIHTYIRAKHQAEITFGDKSRVGRGGMTAKVNAAYC 250 (717)
Q Consensus 174 ~~~~sD~~A~~lA~~L~Ad~li~lTDV~GV~~~dP~---~p~a~~i~~it~~e~~~~~~~gs~~~~~tggM~~Kv~aa~~ 250 (717)
.++++|++|+++|.+|+||+|+|+|||||||++||+ +|++++|++|+++|+.++. ++|||.+|+.++..
T Consensus 166 ~~~~~D~~Aa~lA~~l~Ad~LiilTDVdGvy~~dP~~~~~~~a~~i~~i~~~e~~~~~--------g~ggM~~K~~~~~~ 237 (276)
T 2ogx_A 166 PPHRADTGAFLLADAFGAAGLTIVENVDGIYTADPNGPDRGQARFLPETSATDLAKSE--------GPLPVDRALLDVMA 237 (276)
T ss_dssp CSSCHHHHHHHHHHHHTCSEEEEEESSSSEESSCTTSTTGGGCCEESEEEHHHHHTSC--------SCCSSCHHHHHHHH
T ss_pred CCCChHHHHHHHHHHcCCCEEEEEeCCCccCCCCCCccCCCCCeEcceeCHHHHHHHh--------CcCChHHHHHHHHH
Confidence 349999999999999999999999999999999994 8999999999999877643 48999999998888
Q ss_pred HHHcCCcEEEEeCCCcchHHHHhcCCcceEEEecC
Q 005041 251 AACAGIPVVITSGFAMDSIIKVLEGKRVGTLFHRD 285 (717)
Q Consensus 251 a~~~gi~v~I~~g~~~~~l~~~~tg~~iGT~i~a~ 285 (717)
+.+.+++++|+||+.|+.+.+.++++..||++...
T Consensus 238 ~~~~~~~v~I~~g~~~~~l~~~l~g~~~GT~i~~~ 272 (276)
T 2ogx_A 238 TARHIERVQVVNGLVPGRLTAALRGEHVGTLIRTG 272 (276)
T ss_dssp TCSSCCEEEEEETTSTTHHHHHHTTCCCSEEEECS
T ss_pred HhcCCCeEEEEECCCccHHHHHHcCCCCceEEccC
Confidence 77778899999999999999999998899999754
No 80
>1gs5_A Acetylglutamate kinase; carbamate kinase, amino acid kinase, arginine biosynthesis, phosphoryl group transfer, protein crystallography; HET: NLG ANP; 1.5A {Escherichia coli} SCOP: c.73.1.2 PDB: 1gsj_A* 1oh9_A* 1oha_A* 1ohb_A* 2wxb_A 2x2w_A* 3t7b_A*
Probab=99.97 E-value=1e-29 Score=263.20 Aligned_cols=238 Identities=24% Similarity=0.284 Sum_probs=174.0
Q ss_pred CCeEEEEeCCcccccCCCcccHHHHHHHHHHHHHHHHCCC-eEEEEecChhHhhHHHHhhhhccCCCcc-cccCcc---c
Q 005041 16 VKRVVVKVGTAVVTRSDGRLALGRLGALLEQLKELNSQGF-EIILVSSGAVGVGRQRLRYRKLVNSSLA-DLQKPQ---N 90 (717)
Q Consensus 16 ~~~iVvKiGGs~l~~~~~~~~~~~l~~l~~~Ia~l~~~G~-~vviVhGGg~~~~~~~l~~~~~~~~~~~-~l~~~~---~ 90 (717)
++++||||||+++.++ +.+.+++++|+.+++.|. ++|||||||+++++.+. .. +.++.+. +++.+. +
T Consensus 2 m~~~ViK~GGs~l~~~------~~~~~~~~~i~~l~~~g~~~vVvV~Ggg~~~~~ll~-~~-g~~~~~~~glr~t~~~~l 73 (258)
T 1gs5_A 2 MNPLIIKLGGVLLDSE------EALERLFSALVNYRESHQRPLVIVHGGGCVVDELMK-GL-NLPVKKKNGLRVTPADQI 73 (258)
T ss_dssp CCCEEEEECGGGGGCH------HHHHHHHHHHHHHHTTCCSCEEEEECCHHHHHHHHH-HH-TCCCCEETTEECBCHHHH
T ss_pred CccEEEEEChhHhCCh------HHHHHHHHHHHHHHHcCCCeEEEEeCCcHHHHHHHH-Hc-CCCcceeCCEeeCCHHHH
Confidence 4679999999999974 358999999999887765 48999999998877543 22 2322222 232221 1
Q ss_pred cchHHHHHHhchHHHHHHHHHHhhcCCCCcceeEecccccCch-------hH----hhHHHHHHHHHHhCCCeEEecCCC
Q 005041 91 ELDGKACAAVGQSSLMALYDTLFSQLDVTSSQLLVTDSDFRDE-------DF----RKQLYDTVQSLLDLRVIPIFNEND 159 (717)
Q Consensus 91 ~l~~~~~~a~G~~~~~~~~~~~l~~~g~~~~~~~~~~~d~~~~-------~~----~~~~~~~i~~lL~~g~vPVv~g~d 159 (717)
....+ ...|.. ...+...|..+|+++.++...+.++... +. +..+.+.++.+|++|.|||++|++
T Consensus 74 ~~~~~--~l~~~~--n~~l~~~l~~~G~~a~~l~~~~~~~~~~~~~~~d~~~~g~~~~~~~~~i~~ll~~g~ipVi~~~g 149 (258)
T 1gs5_A 74 DIITG--ALAGTA--NKTLLAWAKKHQIAAVGLFLGDGDSVKVTQLDEELGHVGLAQPGSPKLINSLLENGYLPVVSSIG 149 (258)
T ss_dssp HHHHH--HHHTHH--HHHHHHHHHHTTCCEEEECTTGGGCEEEEECCGGGBSBEEEEECCCHHHHHHHHTTCEEEECSEE
T ss_pred HHHHH--HHhccc--hHHHHHHHHHCCCCeEEEeecCCCEEEEEEcCCCCCCcCceeEECHHHHHHHHHCCCEEEEeCCc
Confidence 11111 122221 1223356678888877654333221110 01 123467899999999999999842
Q ss_pred eeeccCCCCCCCCCee-ecchHHHHHHHhhcCCCEEEEecccCccccCCCccccccccccccccchhHHHhcCCCCCccc
Q 005041 160 AVSTRKAPYEDSSGIF-WDNDSLAGLLALELKADLLVLLSDVEGLYSGPPSEPNSKLIHTYIRAKHQAEITFGDKSRVGR 238 (717)
Q Consensus 160 ~v~~~~~~~~~~~~~~-~~sD~~A~~lA~~L~Ad~li~lTDV~GV~~~dP~~p~a~~i~~it~~e~~~~~~~gs~~~~~t 238 (717)
.. ..+..+ +++|++|+.+|.+|+|| |+|+|||||||++| +++|++|+++|+.+++..+ .++
T Consensus 150 -~~-------~~g~~~~~~~D~~Aa~lA~~l~Ad-li~ltdV~Gv~~~d-----~~~i~~i~~~e~~~l~~~~----~~~ 211 (258)
T 1gs5_A 150 -VT-------DEGQLMNVNADQAATALAATLGAD-LILLSDVSGILDGK-----GQRIAEMTAAKAEQLIEQG----IIT 211 (258)
T ss_dssp -EC-------TTSCEEECCHHHHHHHHHHHHTCE-EEEEESSSSCBCTT-----SCBCCEECHHHHHHHHHTT----CSC
T ss_pred -CC-------CCCcEEEecHHHHHHHHHHHhCCc-EEEEeCCCceECCC-----CCCCcccCHHHHHHHHhcC----CCC
Confidence 11 144444 99999999999999999 99999999999985 6899999999998876543 679
Q ss_pred CChHHHHHHHHHHHH-cCCcEEEEeCCCcchHHHHhcCCcceEEEe
Q 005041 239 GGMTAKVNAAYCAAC-AGIPVVITSGFAMDSIIKVLEGKRVGTLFH 283 (717)
Q Consensus 239 ggM~~Kv~aa~~a~~-~gi~v~I~~g~~~~~l~~~~tg~~iGT~i~ 283 (717)
|||.+|+++|..+++ .+++++|+|++.|+.+.++++++..||.+.
T Consensus 212 gGm~~k~~~a~~~~~~~~~~v~I~~~~~~~~l~~~~~~~~~GT~i~ 257 (258)
T 1gs5_A 212 DGMIVKVNAALDAARTLGRPVDIASWRHAEQLPALFNGMPMGTRIL 257 (258)
T ss_dssp THHHHHHHHHHHHHHHHTSCEEEEESSCGGGHHHHHTTCCSSEEEC
T ss_pred CcHHHHHHHHHHHHHhCCCEEEEecCCCchHHHHHhcCCCCcEEEe
Confidence 999999999999876 478899999999999999999988999875
No 81
>3kzf_A Carbamate kinase; arginine dihydrolase pathway, giardia LAMB target, transferase; 3.00A {Giardia lamblia atcc 50803}
Probab=99.97 E-value=1.9e-29 Score=261.73 Aligned_cols=258 Identities=22% Similarity=0.284 Sum_probs=181.7
Q ss_pred hccCCeEEEEeCCcccccCCC--c--ccHHHHHHHHHHHHHHHHCCCeEEEEecChhHhhHHHHhhhhccCCCcccccCc
Q 005041 13 LKNVKRVVVKVGTAVVTRSDG--R--LALGRLGALLEQLKELNSQGFEIILVSSGAVGVGRQRLRYRKLVNSSLADLQKP 88 (717)
Q Consensus 13 ~~~~~~iVvKiGGs~l~~~~~--~--~~~~~l~~l~~~Ia~l~~~G~~vviVhGGg~~~~~~~l~~~~~~~~~~~~l~~~ 88 (717)
|.+.+++||++||++|..+.. + ...+++...++.|+.+.+.|+++||+||+|||+|...+...... . ...
T Consensus 2 ~~~~~~ivvalgGnal~~~g~~~~~~~q~~~v~~~a~~i~~~~~~g~~vvi~hGnGPQVG~i~~~~~~~~----~--~~~ 75 (317)
T 3kzf_A 2 MSAGKTVVIALGGNAMLQAKEKGDYDTQRKNVEIAASEIYKIHKAGYKVVLTSGNGPQVGAIKLQNQAAA----G--VSP 75 (317)
T ss_dssp -CCCCEEEEECCSTTTC--CCCCCHHHHHHHHHHHHHHHHHHHHTTCEEEEECCCHHHHHHHHHHHHSTT----S--SSC
T ss_pred CCCCCEEEEEcChhhhCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCEEEEEECCcHHHHHHHHHHHhcc----c--cCC
Confidence 456689999999999975332 2 24567899999999999999999999999999998654422111 1 123
Q ss_pred cccchHHHHHHhchHHHH--HHHHHHhhcCCCCcc------eeEecc--cccCc--------------------------
Q 005041 89 QNELDGKACAAVGQSSLM--ALYDTLFSQLDVTSS------QLLVTD--SDFRD-------------------------- 132 (717)
Q Consensus 89 ~~~l~~~~~~a~G~~~~~--~~~~~~l~~~g~~~~------~~~~~~--~d~~~-------------------------- 132 (717)
.+.|......+.|+.+.+ ..+.+.|...|+... |+.+.. .-|.+
T Consensus 76 ~~pld~~~A~sqG~igy~l~~al~~~l~~~g~~~~v~t~itq~~Vd~~Dpaf~~PtKpiG~~y~~~ea~~~~~~~~~~~~ 155 (317)
T 3kzf_A 76 EMPLHVCGAMSQGFIGYMMSQAMDNVFCANNEPANCVTCVTQTLVDPKDQAFTNPTKPVGRFYTEQEAKDLMAANPGKIL 155 (317)
T ss_dssp CCCHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCCEEEBCCEEEECTTCGGGTSCCEECC--------------------
T ss_pred CCCccccCchhhHHHHHHHHHHHHHHHHhcCCCCceeEEEEEEEECCCCccccCCCCCcCCCCCHHHHHHHHHhccCCeE
Confidence 455666666677776653 355677777776421 222211 11110
Q ss_pred ---h--hHh----------hHHHHHHHHHHhCCCeEEecCCCeeeccCCCCCCCCCe-eecchHHHHHHHhhcCCCEEEE
Q 005041 133 ---E--DFR----------KQLYDTVQSLLDLRVIPIFNENDAVSTRKAPYEDSSGI-FWDNDSLAGLLALELKADLLVL 196 (717)
Q Consensus 133 ---~--~~~----------~~~~~~i~~lL~~g~vPVv~g~d~v~~~~~~~~~~~~~-~~~sD~~A~~lA~~L~Ad~li~ 196 (717)
. +++ ..+.+.|+.||++|.|||++|+..++...-.....|.. ++|+|++|+.+|.+|+||+|+|
T Consensus 156 ~ed~grg~RrvV~sP~P~~iVe~~~I~~LL~~G~IvI~aGGgGiPv~~~~~~~~G~~~~id~D~~Aa~lA~~L~AD~LIi 235 (317)
T 3kzf_A 156 REDAGRGWRVVVPSPRPLEIVEYGVIKTLIDNNVLVICTNGGGIPCKRENKVISGVDAVIDKDLATSLLAKTLNSDYLMI 235 (317)
T ss_dssp ------CCCCEECCCCEEEETTHHHHHHHHHTTCEEECCGGGCEEEEECSSCEEECSCCCCHHHHHHHHHHHHTCSCEEE
T ss_pred eecCCCCeeeecCCCCCcceECHHHHHHHHHCCCEEEEeCCCCCCcccCCCcccceEEeccHHHHHHHHHHHhCCCEEEE
Confidence 0 000 03468999999999998887555443311000001122 3999999999999999999999
Q ss_pred ecccCccccCCCccccccccccccccchhHHHhcCCCCCcccCChHHHHHHHHHHHHcCC-cEEEEeCCCcchHHHHhcC
Q 005041 197 LSDVEGLYSGPPSEPNSKLIHTYIRAKHQAEITFGDKSRVGRGGMTAKVNAAYCAACAGI-PVVITSGFAMDSIIKVLEG 275 (717)
Q Consensus 197 lTDV~GV~~~dP~~p~a~~i~~it~~e~~~~~~~gs~~~~~tggM~~Kv~aa~~a~~~gi-~v~I~~g~~~~~l~~~~tg 275 (717)
+|||||||+ ||++|++++|++|+++|+.+++..+ ...+|||.||+++|..++++|+ +++|+|+ +.+.+.++|
T Consensus 236 LTDVdGVy~-dp~~p~a~~I~~it~~e~~~li~~g---~~~~GGM~pKl~AA~~av~~gg~~v~I~s~---~~l~~~l~G 308 (317)
T 3kzf_A 236 LTDVLNACI-NYKKPDERKLEEIKLSEILALEKDG---HFAAGSMGPKVRAAIEFTQATGKMSIITSL---STAVDALNG 308 (317)
T ss_dssp CCSSSSCEE-SSSCSSCEECCEEEHHHHHHHHTTT---SCC--CCHHHHHHHHHHHHHHCCCEEECCG---GGHHHHHTT
T ss_pred ecCCCeeeC-CCCCCCCeECcCcCHHHHHHHHhcC---CCCCCCHHHHHHHHHHHHHcCCCeEEEcch---HHHHHHHCC
Confidence 999999999 7888999999999999998877532 3668999999999999988665 5999995 467788888
Q ss_pred CcceEEEec
Q 005041 276 KRVGTLFHR 284 (717)
Q Consensus 276 ~~iGT~i~a 284 (717)
+ .||++.+
T Consensus 309 ~-~GT~I~~ 316 (317)
T 3kzf_A 309 K-CGTRIIK 316 (317)
T ss_dssp S-SSEEEEC
T ss_pred C-CCeEEec
Confidence 7 7998864
No 82
>3zzh_A Acetylglutamate kinase; transferase, arginine biosynthesis; HET: ARG NLG; 2.10A {Saccharomyces cerevisiae} PDB: 3zzg_A 3zzf_A*
Probab=99.96 E-value=4.1e-30 Score=269.50 Aligned_cols=236 Identities=17% Similarity=0.196 Sum_probs=173.7
Q ss_pred CCeEEEEeCCcccccCCCcccHHHHHHHHHHHHHHHHCCCeEEEEecChhHhhHHHHhhhhccCCCccc-ccCc---ccc
Q 005041 16 VKRVVVKVGTAVVTRSDGRLALGRLGALLEQLKELNSQGFEIILVSSGAVGVGRQRLRYRKLVNSSLAD-LQKP---QNE 91 (717)
Q Consensus 16 ~~~iVvKiGGs~l~~~~~~~~~~~l~~l~~~Ia~l~~~G~~vviVhGGg~~~~~~~l~~~~~~~~~~~~-l~~~---~~~ 91 (717)
++++|||+||++++++ +++++++|+.|++.|.++|||||||+++++.+. ..++++.|.+ ++.+ +|.
T Consensus 48 ~~~iViK~GGsv~~~~--------~~~~~~dI~~l~~~G~~~VvVHGgG~~i~~~l~--~~gi~~~~~~G~RvTd~~~l~ 117 (307)
T 3zzh_A 48 QQFAVIKVGGAIISDN--------LHELASCLAFLYHVGLYPIVLHGTGPQVNGRLE--AQGIEPDYIDGIRITDEHTMA 117 (307)
T ss_dssp SCCEEEEECHHHHHHS--------HHHHHHHHHHHHHBTCCEEEEECCHHHHHHHHH--HTTCCCCEETTEECBCHHHHH
T ss_pred CCEEEEEEChHHhhch--------HHHHHHHHHHHHHCCCCEEEEECCCHHHHHHHH--HcCCCccccCCeecCCHHHHH
Confidence 4789999999998874 689999999999999999999999999998653 3355556654 3333 333
Q ss_pred chHHHHHHhchHHHHHHHHHHhhcCCCCcceeE---ec-c----cccCchhH-hhHHHHHHHHHHhCCCeEEecCCCeee
Q 005041 92 LDGKACAAVGQSSLMALYDTLFSQLDVTSSQLL---VT-D----SDFRDEDF-RKQLYDTVQSLLDLRVIPIFNENDAVS 162 (717)
Q Consensus 92 l~~~~~~a~G~~~~~~~~~~~l~~~g~~~~~~~---~~-~----~d~~~~~~-~~~~~~~i~~lL~~g~vPVv~g~d~v~ 162 (717)
...++ +|+. ...+...|...|+++..+. ++ . .|+...+. ...+++.|+.+|++|+|||+++ +.+.
T Consensus 118 vv~m~---~~~v--n~~lv~~L~~~G~~Av~l~gg~~~a~~~~~~d~g~~G~i~~v~~~~i~~lL~~g~IpVi~~-~g~~ 191 (307)
T 3zzh_A 118 VVRKC---FLEQ--NLKLVTALEQLGVRARPITSGVFTADYLDKDKYKLVGNIKSVTKEPIEASIKAGALPILTS-LAET 191 (307)
T ss_dssp HHHHH---HHHH--HHHHHHHHHHTTCCEEEECSSSEEEEESCHHHHBSBEEEEEECCHHHHHHHHHTCEEEECC-CEEC
T ss_pred HHHHH---HHHH--HHHHHHHHHhCCCCeeEEcCCcEEEEecCccccCccccccccCHHHHHHHHHCCCEEEEeC-CeEC
Confidence 33333 2322 2233467777887765441 11 1 02221111 1145789999999999999997 2222
Q ss_pred ccCCCCCCCCCee-ecchHHHHHHHhhcCCCEEEEecccCccccCCCccccccccccccccc-hhHHHhcCCCCCcccCC
Q 005041 163 TRKAPYEDSSGIF-WDNDSLAGLLALELKADLLVLLSDVEGLYSGPPSEPNSKLIHTYIRAK-HQAEITFGDKSRVGRGG 240 (717)
Q Consensus 163 ~~~~~~~~~~~~~-~~sD~~A~~lA~~L~Ad~li~lTDV~GV~~~dP~~p~a~~i~~it~~e-~~~~~~~gs~~~~~tgg 240 (717)
..+..+ +|+|++|+++|.+|+||+|+|+|||||||++ |++++|++|+++| +.+++.. ..++||
T Consensus 192 -------~~G~~~~i~~D~~A~~lA~~L~Ad~Li~lTdV~GV~~~----~~~~~i~~i~~~e~~~~l~~~----~~~tGG 256 (307)
T 3zzh_A 192 -------ASGQMLNVNADVAAGELARVFEPLKIVYLNEKGGIING----STGEKISMINLDEEYDDLMKQ----SWVKYG 256 (307)
T ss_dssp -------TTCBEEBCCHHHHHHHHHHHHCCSEEEEECSSCSCEET----TTTEECCEEEHHHHHHHHHTS----TTSCHH
T ss_pred -------CCCcEEecCHHHHHHHHHHhCCCCEEEEEeCCcceecC----CCCcCCcccCHHHHHHHHHhC----CCCCCc
Confidence 234455 9999999999999999999999999999986 3689999999976 5555543 367999
Q ss_pred hHHHHHHHHHHHH---cCCcEEEEeCCCcchH-HHHhcCCcceEEEecC
Q 005041 241 MTAKVNAAYCAAC---AGIPVVITSGFAMDSI-IKVLEGKRVGTLFHRD 285 (717)
Q Consensus 241 M~~Kv~aa~~a~~---~gi~v~I~~g~~~~~l-~~~~tg~~iGT~i~a~ 285 (717)
|.||++++..|++ +|.+++|++ ++.+ .++++++..||.+...
T Consensus 257 M~~Kl~aa~~a~~~v~~g~~v~I~~---~~~ll~elft~~g~GT~I~~~ 302 (307)
T 3zzh_A 257 TKLKIREIKELLDYLPRSSSVAIIN---VQDLQKELFTDSGAGTMIRRG 302 (307)
T ss_dssp HHHHHHHHHHHHHHSCTTCCEEEEC---GGGHHHHHHSCCCCSEEEECC
T ss_pred HHHHHHHHHHHHHHhccCeEEEEeC---ccHHHHHHhcCCCCcEEEecC
Confidence 9999997555554 477799998 7787 7889999999999875
No 83
>2brx_A Uridylate kinase; UMP kinase, amino acid kinase, phosphoryl group transfer, pyrimidine biosynthesis, transferase; 2.40A {Pyrococcus furiosus} SCOP: c.73.1.3 PDB: 2ji5_A* 2bmu_A* 2bri_A*
Probab=99.96 E-value=5.4e-30 Score=262.78 Aligned_cols=226 Identities=19% Similarity=0.232 Sum_probs=162.5
Q ss_pred hccCCeEEEEeCCcccccCCCcccHHHHHHHHHHHHHHHHCCCeEEEEecChhHhhHHHHhhhhccCCCcccccCccccc
Q 005041 13 LKNVKRVVVKVGTAVVTRSDGRLALGRLGALLEQLKELNSQGFEIILVSSGAVGVGRQRLRYRKLVNSSLADLQKPQNEL 92 (717)
Q Consensus 13 ~~~~~~iVvKiGGs~l~~~~~~~~~~~l~~l~~~Ia~l~~~G~~vviVhGGg~~~~~~~l~~~~~~~~~~~~l~~~~~~l 92 (717)
++..+++||||||+++++++ ++.+++..++++|+.+++ |+++|||||||+.+...+ ...... +++... +
T Consensus 16 ~~~~k~iViKlGGs~l~~~~--~~~~~i~~~~~~i~~l~~-g~~vViV~GgG~~~~~~~-~~~~~~-----gl~~~~--~ 84 (244)
T 2brx_A 16 RGSHMRIVFDIGGSVLVPEN--PDIDFIKEIAYQLTKVSE-DHEVAVVVGGGKLARKYI-EVAEKF-----NSSETF--K 84 (244)
T ss_dssp ---CCEEEEEECHHHHCSSS--CCHHHHHHHHHHHHHHHH-HSEEEEEECCHHHHHHHH-HHHHTT-----TCCHHH--H
T ss_pred hhcccEEEEEechhhcCCCC--CCHHHHHHHHHHHHHHhC-CCeEEEEECccHHHhchH-HHHHHc-----CCCccc--H
Confidence 45567899999999999764 677889999999999999 999999999987555421 111111 111111 1
Q ss_pred hHHHHHHhchHHHHHHHHHHhhcCCCCcceeEecccccCchhHhhHHHHHHHHHHhCCCeEEecCCCeeeccCCCCCCCC
Q 005041 93 DGKACAAVGQSSLMALYDTLFSQLDVTSSQLLVTDSDFRDEDFRKQLYDTVQSLLDLRVIPIFNENDAVSTRKAPYEDSS 172 (717)
Q Consensus 93 ~~~~~~a~G~~~~~~~~~~~l~~~g~~~~~~~~~~~d~~~~~~~~~~~~~i~~lL~~g~vPVv~g~d~v~~~~~~~~~~~ 172 (717)
. .+.+++...-..++...|..+|+.. +.. +.+.+.++|++|.|||++| +
T Consensus 85 ~--~~~~~~~~~~~~l~~~~l~~~g~~~--------~~~-------~~~~i~~lL~~g~IpVi~g--------------g 133 (244)
T 2brx_A 85 D--FIGIQITRANAMLLIAALREKAYPV--------VVE-------DFWEAWKAVQLKKIPVMGG--------------T 133 (244)
T ss_dssp H--HHHHHHHHHHHHHHHHHHGGGBCSS--------CBC-------SHHHHHHHHHTTCBCEECC--------------C
T ss_pred H--HHHHHHHHHHHHHHHHHHHHcCCCC--------CcC-------CHHHHHHHHhCCCEEEEcC--------------C
Confidence 1 1122222221223346787777533 111 2456889999999999985 1
Q ss_pred CeeecchHHHHHHHhhcCCCEEEEecccCccccCCCc-cccccccccccccchhHHHhcCCCCCcccCChHHHHHHHHHH
Q 005041 173 GIFWDNDSLAGLLALELKADLLVLLSDVEGLYSGPPS-EPNSKLIHTYIRAKHQAEITFGDKSRVGRGGMTAKVNAAYCA 251 (717)
Q Consensus 173 ~~~~~sD~~A~~lA~~L~Ad~li~lTDV~GV~~~dP~-~p~a~~i~~it~~e~~~~~~~gs~~~~~tggM~~Kv~aa~~a 251 (717)
..++++|++|+.+|.+|+||+|+|+|||||||++||+ +|++++|++|+++|+.+++..+ ...+|||.+|..+|..+
T Consensus 134 ~~~~~~D~~Aa~lA~~l~Ad~liilTDVdGVy~~dP~~~p~a~~i~~i~~~e~~~~~~~~---g~~~g~m~~~~~~A~~~ 210 (244)
T 2brx_A 134 HPGHTTDAVAALLAEFLKADLLVVITNVDGVYTADPKKDPTAKKIKKMKPEELLEIVGKG---IEKAGSSSVIDPLAAKI 210 (244)
T ss_dssp STTCCHHHHHHHHHHHTTCSEEEEECSSSSCBSSCTTTCTTCCBCSEECHHHHHHHHHC-----------CCSCHHHHHH
T ss_pred CCCCCchHHHHHHHHHcCCCEEEEEeCCCccCCCCCCCCCCCeEeeEECHHHHHHHHhcc---CCCCCCCcchHHHHHHH
Confidence 1246899999999999999999999999999999994 8999999999999998776541 14478888877777766
Q ss_pred HH-cCCcEEEEeCCCcchHHHHhcCCcceEEEe
Q 005041 252 AC-AGIPVVITSGFAMDSIIKVLEGKRVGTLFH 283 (717)
Q Consensus 252 ~~-~gi~v~I~~g~~~~~l~~~~tg~~iGT~i~ 283 (717)
++ .+++++|+||+.|+.+.++++|+..||++.
T Consensus 211 ~~~~~~~v~I~ng~~~~~l~~~l~g~~~GT~i~ 243 (244)
T 2brx_A 211 IARSGIKTIVIGKEDAKDLFRVIKGDHNGTTIE 243 (244)
T ss_dssp HHHHTCCEEEECHHHHTCHHHHHTTCSSSEEEC
T ss_pred HHHCCCeEEEEeCCChhHHHHHHcCCCCceEec
Confidence 55 678899999999999999999988999885
No 84
>3d2m_A Putative acetylglutamate synthase; protein-COA-Glu ternary complex, transferase; HET: COA GLU; 2.21A {Neisseria gonorrhoeae} PDB: 2r8v_A* 3b8g_A* 2r98_A* 3d2p_A*
Probab=99.96 E-value=6.2e-29 Score=278.48 Aligned_cols=254 Identities=17% Similarity=0.176 Sum_probs=181.4
Q ss_pred CCeEEEEeCCcccccCCCcccHHHHHHHHHHHHHHHHCCCeEEEEecChhHhhHHHHhhhhccCCCccc-ccCcc-ccch
Q 005041 16 VKRVVVKVGTAVVTRSDGRLALGRLGALLEQLKELNSQGFEIILVSSGAVGVGRQRLRYRKLVNSSLAD-LQKPQ-NELD 93 (717)
Q Consensus 16 ~~~iVvKiGGs~l~~~~~~~~~~~l~~l~~~Ia~l~~~G~~vviVhGGg~~~~~~~l~~~~~~~~~~~~-l~~~~-~~l~ 93 (717)
++++||||||+++++++ +..++++|+.+++.|+++|||||||++++..+. ..+..+++.+ ++.+. ..+.
T Consensus 43 ~~~iViK~GG~~l~~~~-------~~~~~~~i~~l~~~g~~vvlVhggg~~~~~~~~--~~~~~~~~~~g~r~t~~~~l~ 113 (456)
T 3d2m_A 43 GTTLVAGIDGRLLEGGT-------LNKLAADIGLLSQLGIRLVLIHGAYHFLDRLAA--AQGRTPHYCRGLRVTDETSLG 113 (456)
T ss_dssp TCEEEEEECGGGGTSTH-------HHHHHHHHHHHHHTTCEEEEEECCHHHHHTTTT--TTTCCCCCGGGCCCBCHHHHH
T ss_pred CCEEEEEEChHHhcCch-------HHHHHHHHHHHHHCCCeEEEEeCCcHHHHHHHH--HCCCCCEeeCCeecCCHHHHH
Confidence 57899999999999763 789999999999999999999999999887543 2233333322 32221 1122
Q ss_pred HHHHHHhchHHHHHHHHHHhhcCCCCc-----------ceeEecc-------cccCchhHh-hHHHHHHHHHHhCCCeEE
Q 005041 94 GKACAAVGQSSLMALYDTLFSQLDVTS-----------SQLLVTD-------SDFRDEDFR-KQLYDTVQSLLDLRVIPI 154 (717)
Q Consensus 94 ~~~~~a~G~~~~~~~~~~~l~~~g~~~-----------~~~~~~~-------~d~~~~~~~-~~~~~~i~~lL~~g~vPV 154 (717)
... .++|+...+ +...|. .|+++ .+++... .|+...+.+ ..+.+.|+++|++|.|||
T Consensus 114 ~~~-~~~G~~~~~--l~~~l~-~g~~~~~~~~~l~~~~~~~~~~~~~~~~~~~d~g~~g~v~~v~~~~i~~lL~~g~ipI 189 (456)
T 3d2m_A 114 QAQ-QFAGTVRSR--FEAALC-GSVSGFARAPSVPLVSGNFLTARPIGVIDGTDMEYAGVIRKTDTAALRFQLDAGNIVW 189 (456)
T ss_dssp HHH-HHHHHHHHH--HHHHHH-TC--------CCCEECCSCEEEEECCEETTEECBTBEEEEEECHHHHHHHHHTTCEEE
T ss_pred HHH-HHHhHHHHH--HHHHHh-cccccCCCccceeeccCcEEEEEEcccccCcccCceeeEEEECHHHHHHHHHCCCeEE
Confidence 112 223765543 355666 66555 2222211 022221111 134689999999999999
Q ss_pred ecCCCeeeccCCCCCCCCCee-ecchHHHHHHHhhcCCCEEEEecccCccccCCCccccccccccccccchhHHHhcCCC
Q 005041 155 FNENDAVSTRKAPYEDSSGIF-WDNDSLAGLLALELKADLLVLLSDVEGLYSGPPSEPNSKLIHTYIRAKHQAEITFGDK 233 (717)
Q Consensus 155 v~g~d~v~~~~~~~~~~~~~~-~~sD~~A~~lA~~L~Ad~li~lTDV~GV~~~dP~~p~a~~i~~it~~e~~~~~~~gs~ 233 (717)
+++++ . +..+..+ +|+|++|+.+|.+|+||+|+|+|||||||++ ++++|++|+++|+.+++..|
T Consensus 190 i~~~~---~-----~~~g~~~~~~~D~~Aa~lA~~l~Ad~li~lTdvdGv~~~-----~~~~i~~i~~~e~~~~~~~g-- 254 (456)
T 3d2m_A 190 MPPLG---H-----SYGGKTFNLDMVQAAASVAVSLQAEKLVYLTLSDGISRP-----DGTLAETLSAQEAQSLAEHA-- 254 (456)
T ss_dssp ECSEE---E-----CTTSCEEECCHHHHHHHHHHHHTCSEEEEEESSSSCBCT-----TSCBCSEEEHHHHHHHHTTC--
T ss_pred ECCcc---c-----CCCCCEEEECHHHHHHHHHHHcCCCEEEEEECCccccCC-----CCCccccCCHHHHHHHHhcc--
Confidence 98732 2 1134444 9999999999999999999999999999997 38999999999998876543
Q ss_pred CCcccCChHHHHHHHHHHHHcCCc-EEEEeCCCcchH-HHHhcCCcceEEEecCCc---ccccHhhHHHHHHH
Q 005041 234 SRVGRGGMTAKVNAAYCAACAGIP-VVITSGFAMDSI-IKVLEGKRVGTLFHRDAH---LWVKQVGAREMAVA 301 (717)
Q Consensus 234 ~~~~tggM~~Kv~aa~~a~~~gi~-v~I~~g~~~~~l-~~~~tg~~iGT~i~a~~~---~~~~~~~v~~av~~ 301 (717)
+|||.||+++|..|+++|++ ++|+|++.|+.+ .++++++..||.+.+..- .....+|++...+-
T Consensus 255 ----~ggm~~Kl~aa~~a~~~gv~~v~I~~~~~~~~ll~~l~~~~~~GT~i~~~~~~~IR~a~~~D~~~i~~l 323 (456)
T 3d2m_A 255 ----ASETRRLISSAVAALEGGVHRVQILNGAADGSLLQELFTRNGIGTSIAKEAFVSIRQAHSGDIPHIAAL 323 (456)
T ss_dssp ----CHHHHHHHHHHHHHHHTTCSEEEEEETTSTTHHHHHHHCSSCSSEEEECCCCCEEEECCGGGHHHHHHH
T ss_pred ----CCChHHHHHHHHHHHHhCCCEEEEecCcCCchHHHHHHhhcCCceeeecccceeeCCCCHHHHHHHHHH
Confidence 39999999999999999997 999999999998 778898889999976521 00135666655443
No 85
>2jjx_A Uridylate kinase, UMP kinase; structural genomics, pyrimidine biosynthesis, ATP-binding, nucleotide-binding, OPPF, PYRH, cytoplasm; HET: ATP; 2.82A {Bacillus anthracis}
Probab=99.96 E-value=5.5e-28 Score=249.60 Aligned_cols=238 Identities=16% Similarity=0.201 Sum_probs=170.8
Q ss_pred hHHhhccCCeEEEEeCCcccccCC-CcccHHHHHHHHHHHHHHHHCCCeEEEEecChhHhhHHHHhhhhccCCCcccccC
Q 005041 9 TRDFLKNVKRVVVKVGTAVVTRSD-GRLALGRLGALLEQLKELNSQGFEIILVSSGAVGVGRQRLRYRKLVNSSLADLQK 87 (717)
Q Consensus 9 ~~~~~~~~~~iVvKiGGs~l~~~~-~~~~~~~l~~l~~~Ia~l~~~G~~vviVhGGg~~~~~~~l~~~~~~~~~~~~l~~ 87 (717)
-...|+..+++|||||||+++++. ..++.+.+.+++++|+.+++.|+++|||||||+.+....++.. +.. . ...+
T Consensus 5 ~~~~~~~~~~iViKiGGs~l~~~~~~~~~~~~i~~~a~~I~~l~~~G~~vViV~GgG~~~~~~~~~~~-g~~-~-~~~~- 80 (255)
T 2jjx_A 5 HHHHMRPYKRVLIKLSGGALADQTGNSFNSKRLEHIANEILSIVDLGIEVSIVIGGGNIFRGHLAEEW-GID-R-VEAD- 80 (255)
T ss_dssp -----CBCSEEEEEECGGGTSCSSSCSCCHHHHHHHHHHHHHHHTTTCEEEEEECCTTTCCHHHHHHT-TCC-H-HHHH-
T ss_pred cccccccCCEEEEEECHHHhCCCCCCCCCHHHHHHHHHHHHHHHHCCCeEEEEECchHHHhhhHHHHc-CCC-C-CChH-
Confidence 344588899999999999999862 3678889999999999999999999999999776533322211 221 0 0000
Q ss_pred ccccchHHHHHHhchHHHHHHHHHHhhc-CCCCcceeEecccccCch-hHhhHHHHHHHHHHhCCCeEEecCCCeeeccC
Q 005041 88 PQNELDGKACAAVGQSSLMALYDTLFSQ-LDVTSSQLLVTDSDFRDE-DFRKQLYDTVQSLLDLRVIPIFNENDAVSTRK 165 (717)
Q Consensus 88 ~~~~l~~~~~~a~G~~~~~~~~~~~l~~-~g~~~~~~~~~~~d~~~~-~~~~~~~~~i~~lL~~g~vPVv~g~d~v~~~~ 165 (717)
....+.+..+.. ++...|.. +|+++..+ +..++... ..+ +....+ ++|++|.|||++| .
T Consensus 81 -----~~~~~~~~~~~~---ll~~~l~~~~Gi~a~~l--~~~~~~~v~~~~-~~~~~~-~lL~~g~IpVi~g-----g-- 141 (255)
T 2jjx_A 81 -----NIGTLGTIINSL---MLRGVLTSKTNKEVRVM--TSIPFNAVAEPY-IRLRAV-HHLDNGYIVIFGG-----G-- 141 (255)
T ss_dssp -----HHHHHHHHHHHH---HHHHHHHHHCSSCEEEE--ESSCCCSSSEEC-CHHHHH-HHHHTTCEEEEES-----T--
T ss_pred -----HHhHHHHHHHHH---HHHHHHHhhcCCceEEe--cHHHcCcccCcc-cHHHHH-HHHhCCcEEEEeC-----C--
Confidence 011233333322 34688888 99887633 21121100 011 223344 8999999999985 1
Q ss_pred CCCCCCCCeeecchHHHHHHHhhcCCCEEEEec-ccCccccCCCc-cccccccccccccchhHHHhcCCCCCcccCChHH
Q 005041 166 APYEDSSGIFWDNDSLAGLLALELKADLLVLLS-DVEGLYSGPPS-EPNSKLIHTYIRAKHQAEITFGDKSRVGRGGMTA 243 (717)
Q Consensus 166 ~~~~~~~~~~~~sD~~A~~lA~~L~Ad~li~lT-DV~GV~~~dP~-~p~a~~i~~it~~e~~~~~~~gs~~~~~tggM~~ 243 (717)
.+..++++|++|+.+|.+|+||+|+|+| ||||||++||+ +|++++|++|+++|+.+. ++++|.+
T Consensus 142 -----~g~~~vttD~~Aa~lA~~l~Ad~liilT~DVdGVy~~dP~~~p~a~~i~~is~~e~~~~---------G~~~m~~ 207 (255)
T 2jjx_A 142 -----NGQPFVTTDYPSVQRAIEMNSDAILVAKQGVDGVFTSDPKHNKSAKMYRKLNYNDVVRQ---------NIQVMDQ 207 (255)
T ss_dssp -----TSCSSCCSHHHHHHHHHHHTCSEEEEEESSCCSCBSSCTTTCSSCCBCSEEEHHHHHHT---------TCCSSCH
T ss_pred -----CCCCccchHHHHHHHHHhcCCCEEEEEeCCcCeeECCCCCCCCCCeEeeEecHHHHHHc---------CCccCHH
Confidence 1223478899999999999999999999 99999999995 999999999998777642 2578875
Q ss_pred HHHHHHHHHHcCCcEEEEeCCCcchHHHHhcCCcceEEEecC
Q 005041 244 KVNAAYCAACAGIPVVITSGFAMDSIIKVLEGKRVGTLFHRD 285 (717)
Q Consensus 244 Kv~aa~~a~~~gi~v~I~~g~~~~~l~~~~tg~~iGT~i~a~ 285 (717)
.++..+.+.|++++|+|++.|+.+.+.++|+..||++.+.
T Consensus 208 --~a~~~a~~~gi~v~I~~~~~~~~l~~~l~g~~~GT~I~~~ 247 (255)
T 2jjx_A 208 --AALLLARDYNLPAHVFNFDEPGVMRRICLGEHVGTLINDD 247 (255)
T ss_dssp --HHHHHHHHHTCCEEEEETTSTTHHHHHHBTCCCSEEEESS
T ss_pred --HHHHHHHHcCCeEEEEeCCCchHHHHHhcCCCCceEEecC
Confidence 4555566689999999999999999999998899999764
No 86
>3s6g_A N-acetylglutamate kinase / N-acetylglutamate SYNT; synthase, transferase; HET: COA; 2.67A {Maricaulis maris} PDB: 3s7y_A 3s6h_A*
Probab=99.96 E-value=3.5e-29 Score=275.98 Aligned_cols=237 Identities=16% Similarity=0.134 Sum_probs=177.6
Q ss_pred CCeEEEEeCCcccccCCCcccHHHHHHHHHHHHHHHHCCCeEEEEecChhHhhHHHHhhhhccCCCccc-ccC---cccc
Q 005041 16 VKRVVVKVGTAVVTRSDGRLALGRLGALLEQLKELNSQGFEIILVSSGAVGVGRQRLRYRKLVNSSLAD-LQK---PQNE 91 (717)
Q Consensus 16 ~~~iVvKiGGs~l~~~~~~~~~~~l~~l~~~Ia~l~~~G~~vviVhGGg~~~~~~~l~~~~~~~~~~~~-l~~---~~~~ 91 (717)
++++|||+||++++++ +.+++++|+.+++.|.++|||||||+++++.+. ..++++.|.+ ++. ..|.
T Consensus 58 ~~~iViK~GGsv~~~~--------l~~~a~dI~~l~~~G~~~VvVHGgG~~i~~~l~--~~gi~~~f~~G~RvTd~~~l~ 127 (460)
T 3s6g_A 58 ERFAVIKVGGAVIQDD--------LPGLASALAFLQTVGLTPVVVHGGGPQLDAALE--AADIPTERVDGLRVTRDEAMP 127 (460)
T ss_dssp GGSEEEEECHHHHHHC--------HHHHHHHHHHHHHHTCCCEEEECCHHHHHHHHH--HHSCCCCCCSSSCCBCTTTHH
T ss_pred CCEEEEEEChHHhhhH--------HHHHHHHHHHHHHCCCcEEEEECCChHHHHHHH--HcCCCccccCCccCCCHHHHH
Confidence 4789999999988764 699999999999999999999999999998653 3355555544 333 3333
Q ss_pred chHHHHHHhchHHHHHHHHHHhhcCCCCcceeE----e----cccccCchhHh-hHHHHHHHHHHhCCCeEEecCCCeee
Q 005041 92 LDGKACAAVGQSSLMALYDTLFSQLDVTSSQLL----V----TDSDFRDEDFR-KQLYDTVQSLLDLRVIPIFNENDAVS 162 (717)
Q Consensus 92 l~~~~~~a~G~~~~~~~~~~~l~~~g~~~~~~~----~----~~~d~~~~~~~-~~~~~~i~~lL~~g~vPVv~g~d~v~ 162 (717)
...++ +|+.. ..+...|...|+++..+. . ...|+...+.+ ..+++.|+.+|++|.|||++++ .
T Consensus 128 vv~~~---lg~vn--~~lv~aL~~~G~~Av~lsg~~~~a~~~~~~d~g~~G~I~~v~~~~i~~lL~~g~IpVi~p~---g 199 (460)
T 3s6g_A 128 IIRDT---LTQAN--LALVDAIRDAGGRAAAVPRGVFEADIVDADKLGRVGEPRHIHLDLVGSAARAGQAAILACL---G 199 (460)
T ss_dssp HHHHH---HHHHH--HHHHHHHHHTTCCEEEECSSSEEEEESCTTTTBSEEEEEEECCHHHHHHHHTTCEEEEECE---E
T ss_pred HHHHH---HHHHH--HHHHHHHHhCCCCceEEecCeEEEEEecCcccCccCcceEEcHHHHHHHHHCCcEEEEECc---e
Confidence 33333 34322 223356777777665431 1 11233222221 2457899999999999999862 1
Q ss_pred ccCCCCCCCCCee-ecchHHHHHHHhhcCCCEEEEecccCccccCCCcccccccccccccc-chhHHHhcCCCCCcccCC
Q 005041 163 TRKAPYEDSSGIF-WDNDSLAGLLALELKADLLVLLSDVEGLYSGPPSEPNSKLIHTYIRA-KHQAEITFGDKSRVGRGG 240 (717)
Q Consensus 163 ~~~~~~~~~~~~~-~~sD~~A~~lA~~L~Ad~li~lTDV~GV~~~dP~~p~a~~i~~it~~-e~~~~~~~gs~~~~~tgg 240 (717)
. +..|..+ +|+|++|+++|.+|+||+|+|+|||+|||+++ +++|++|+.+ |++.++.. ..++||
T Consensus 200 ~-----~~~G~~~~i~~D~~Aa~lA~~L~Ad~LiilTdv~Gv~~~~-----~~lI~~i~~~~e~~~l~~~----~~~tGG 265 (460)
T 3s6g_A 200 E-----TPDGTLVNINADVAVRALVHALQPYKVVFLTGTGGLLDED-----GDILSSINLATDFGDLMQA----DWVNGG 265 (460)
T ss_dssp E-----CTTCCEEEECHHHHHHHHHHHHCCSEEEEECSSCSCBCTT-----SSBCCEEEHHHHHHHHHHC----SSSCHH
T ss_pred E-----CCCCcEEecCHHHHHHHHHHHcCCCEEEEEeCCccccCCC-----CeecceeCcHHHHHHHHhc----CCCCCc
Confidence 1 1234445 99999999999999999999999999999863 8999999986 67766653 377999
Q ss_pred hHHHHHHHHHHHHcCCc-EEEEeCCCcchH-HHHhcCCcceEEEecC
Q 005041 241 MTAKVNAAYCAACAGIP-VVITSGFAMDSI-IKVLEGKRVGTLFHRD 285 (717)
Q Consensus 241 M~~Kv~aa~~a~~~gi~-v~I~~g~~~~~l-~~~~tg~~iGT~i~a~ 285 (717)
|.+|+++|..+++ |++ ++|++++.|+.+ .++++++.+||.+...
T Consensus 266 M~~Kl~aa~~a~~-gv~~v~iv~g~~~~~Ll~eLft~~g~GT~i~~~ 311 (460)
T 3s6g_A 266 MRLKLEEIKRLLD-DLPLSSSVSITRPSELARELFTHAGSGTLIRRG 311 (460)
T ss_dssp HHHHHHHHHHHHH-TSCTTCEEEEECGGGHHHHHHSSCCSSEEEECC
T ss_pred HHHHHHHHHHHHh-CCCcEEEEEeCCCcHHHHHHhcCCCCceEEEcC
Confidence 9999999999988 564 999999999998 6789999999999876
No 87
>2ij9_A Uridylate kinase; structural genomics, protein structure initiative, P nysgxrc; 2.90A {Archaeoglobus fulgidus} SCOP: c.73.1.3
Probab=99.96 E-value=2.3e-28 Score=246.94 Aligned_cols=214 Identities=16% Similarity=0.166 Sum_probs=154.8
Q ss_pred CeEEEEeCCcccccCCCcccHHHHHHHHHHHHHHHHCCCeEEEEecChhHhhHH--HHhhhhccCCCcccccCccccchH
Q 005041 17 KRVVVKVGTAVVTRSDGRLALGRLGALLEQLKELNSQGFEIILVSSGAVGVGRQ--RLRYRKLVNSSLADLQKPQNELDG 94 (717)
Q Consensus 17 ~~iVvKiGGs~l~~~~~~~~~~~l~~l~~~Ia~l~~~G~~vviVhGGg~~~~~~--~l~~~~~~~~~~~~l~~~~~~l~~ 94 (717)
+++|||||||+++++ .+.+.+++++|+.+++ |+++|||||||++++.. +++.. +. +...+.. .
T Consensus 1 ~~iViK~GGs~l~~~-----~~~~~~~~~~i~~l~~-g~~vvlV~ggG~~~~~~~~~~~~~-g~-------~~~~l~~-~ 65 (219)
T 2ij9_A 1 MKVVLSLGGSVLSNE-----SEKIREFAKTIESVAQ-QNQVFVVVGGGKLAREYIKSAREL-GA-------SETFCDY-I 65 (219)
T ss_dssp CEEEEEECSSTTTTC-----HHHHHHHHHHHHHHHH-HSEEEEEECCHHHHHHHHHHHHHT-TC-------CHHHHHH-H
T ss_pred CeEEEEeChhhhCCh-----HHHHHHHHHHHHHHcC-CCEEEEEECcchHhcchHHHHHHc-CC-------CccchHH-H
Confidence 369999999999973 3458999999999999 99999999998876663 22211 11 1111110 1
Q ss_pred HHHHHhchHHHHHHHHHHhhcCCCCcceeEecccccCchhHhhHHHHHHHHHHhCCCeEEecCCCeeeccCCCCCCCCCe
Q 005041 95 KACAAVGQSSLMALYDTLFSQLDVTSSQLLVTDSDFRDEDFRKQLYDTVQSLLDLRVIPIFNENDAVSTRKAPYEDSSGI 174 (717)
Q Consensus 95 ~~~~a~G~~~~~~~~~~~l~~~g~~~~~~~~~~~d~~~~~~~~~~~~~i~~lL~~g~vPVv~g~d~v~~~~~~~~~~~~~ 174 (717)
.++...++.. +++.+|... + .+ +.. +.+.++++|++|.|||++| +..
T Consensus 66 ~~~~~~~~~~---l~~~~~~~~-~--~~------~~~-------~~~~i~~ll~~g~ipVi~~--------------g~~ 112 (219)
T 2ij9_A 66 GIAATRLNAM---LLISAIPSA-A--KK------VPV-------DFMEAEELSKLYRVVVMGG--------------TFP 112 (219)
T ss_dssp HHHHHHHHHH---HHHHHCTTB-C--SS------CCS-------SHHHHHHHHTTCSEEEECC--------------CSS
T ss_pred HHHHHHHHHH---HHHHHHHHh-c--CC------CcC-------CHHHHHHHHHCCCEEEEeC--------------CCC
Confidence 1222233332 333555332 1 11 111 2467899999999999985 123
Q ss_pred eecchHHHHHHHhhcCCCEEEEecccCccccCCCc-cccccccccccccchhHHHhc-CCCCCcccCChHHHHHHHHHH-
Q 005041 175 FWDNDSLAGLLALELKADLLVLLSDVEGLYSGPPS-EPNSKLIHTYIRAKHQAEITF-GDKSRVGRGGMTAKVNAAYCA- 251 (717)
Q Consensus 175 ~~~sD~~A~~lA~~L~Ad~li~lTDV~GV~~~dP~-~p~a~~i~~it~~e~~~~~~~-gs~~~~~tggM~~Kv~aa~~a- 251 (717)
++|+|++|+.+|.+|+||+|+|+|||||||++||+ +|++++|++|+++|+.+++.. | ..+|||.+|..+|..+
T Consensus 113 ~~~~D~~Aa~lA~~l~Ad~li~lTdVdGv~~~dP~~~~~a~~i~~i~~~e~~~~~~~~g----~~~g~~~~~~~~a~~~~ 188 (219)
T 2ij9_A 113 GHTTDATAALLAEFIKADVFINATNVDGVYSADPKSDTSAVKYDRLSPQQLVEIVSRSS----AKAGTNVVIDLLAAKII 188 (219)
T ss_dssp SSCTHHHHHHHHHHTTCSEEEEEESSSSCBCSSCSSSSSCCBCSEECHHHHHHHTCC---------CCCCCSCHHHHHHH
T ss_pred CCCchHHHHHHHHHcCCCeEEEeeCCCceecCCCCCCCCCeEeeeeCHHHHHHHHhcCC----CCCCCccchHHHHHHHH
Confidence 47899999999999999999999999999999995 999999999999999876543 2 3467776666666554
Q ss_pred HHcCCcEEEEeCCCcchHHHHhcCCcceEEEe
Q 005041 252 ACAGIPVVITSGFAMDSIIKVLEGKRVGTLFH 283 (717)
Q Consensus 252 ~~~gi~v~I~~g~~~~~l~~~~tg~~iGT~i~ 283 (717)
.+.+++++|+|+ .|+.+.+.++++..||++.
T Consensus 189 ~~~~~~v~I~~g-~~~~l~~~~~g~~~GT~i~ 219 (219)
T 2ij9_A 189 ERSKIKTYVILG-TPENIMKAVKGEAVGTVIA 219 (219)
T ss_dssp HHHTCCEEEEEC-CHHHHHHHHTTCCCSEEEC
T ss_pred HHCCCeEEEEEC-CHhHHHHHHcCCCCCeEeC
Confidence 556788999999 9999999999988999863
No 88
>4ab7_A Protein Arg5,6, mitochondrial; transferase, arginine biosynthesis, amino acid kinase domain GCN5-related acetyltransferase, GNAT; HET: NLG; 3.25A {Saccharomyces cerevisiae} PDB: 3zzi_A*
Probab=99.95 E-value=1.1e-28 Score=271.14 Aligned_cols=236 Identities=17% Similarity=0.189 Sum_probs=173.8
Q ss_pred CCeEEEEeCCcccccCCCcccHHHHHHHHHHHHHHHHCCCeEEEEecChhHhhHHHHhhhhccCCCccc-ccCc---ccc
Q 005041 16 VKRVVVKVGTAVVTRSDGRLALGRLGALLEQLKELNSQGFEIILVSSGAVGVGRQRLRYRKLVNSSLAD-LQKP---QNE 91 (717)
Q Consensus 16 ~~~iVvKiGGs~l~~~~~~~~~~~l~~l~~~Ia~l~~~G~~vviVhGGg~~~~~~~l~~~~~~~~~~~~-l~~~---~~~ 91 (717)
++++|||+||++++++ ++.++++|+.|+..|.++|||||||+++++.+. ..++++.|.+ ++.+ +|.
T Consensus 48 ~~~iVIK~GGsv~~~~--------l~~la~dI~~l~~~G~~~VvVHGgG~~i~~~l~--~~gi~~~f~~G~RvTd~~tl~ 117 (464)
T 4ab7_A 48 QQFAVIKVGGAIISDN--------LHELASCLAFLYHVGLYPIVLHGTGPQVNGRLE--AQGIEPDYIDGIRITDEHTMA 117 (464)
T ss_dssp -CCEEEEECHHHHHHC--------HHHHHHHHHHHHHTTCCCEEEECCCHHHHHHHH--HTTCCCCEETTEECBCHHHHH
T ss_pred CceEEEEECHHHhhch--------HHHHHHHHHHHHHCCCeEEEEECCcHHHHHHHH--HcCCCccccCCeecCCHHHHH
Confidence 4789999999999874 689999999999999999999999999998653 3355666654 4333 333
Q ss_pred chHHHHHHhchHHHHHHHHHHhhcCCCCccee----Eecc----cccCchhH-hhHHHHHHHHHHhCCCeEEecCCCeee
Q 005041 92 LDGKACAAVGQSSLMALYDTLFSQLDVTSSQL----LVTD----SDFRDEDF-RKQLYDTVQSLLDLRVIPIFNENDAVS 162 (717)
Q Consensus 92 l~~~~~~a~G~~~~~~~~~~~l~~~g~~~~~~----~~~~----~d~~~~~~-~~~~~~~i~~lL~~g~vPVv~g~d~v~ 162 (717)
...+++ |. +...+...|...|+++..+ +... .|+...+. ...+++.|+.+|++|.|||++| +.+
T Consensus 118 vv~mv~---~~--vn~~lv~~L~~~G~~Avglsgg~~~a~~~~~~d~g~vG~I~~v~~~~I~~lL~~G~IPVi~~-~g~- 190 (464)
T 4ab7_A 118 VVRKCF---LE--QNLKLVTALEQLGVRARPITSGVFTADYLDKDKYKLVGNIKSVTKEPIEASIKAGALPILTS-LAE- 190 (464)
T ss_dssp HHHHHH---HH--HHHHHHHHHHHTTCCEEEECSSSEEEEESCTTTTBSBEEEEEECCHHHHHHHHTTCEEEEES-EEE-
T ss_pred HHHHHH---HH--HHHHHHHHHHhCCCCeEEECCCcEEEEecCccccCCcCcccccCHHHHHHHHHCCcEEEEcC-CcC-
Confidence 333332 32 2233456777788776544 1111 12221111 1145789999999999999997 222
Q ss_pred ccCCCCCCCCCee-ecchHHHHHHHhhcCCCEEEEecccCccccCCCccccccccccccccc-hhHHHhcCCCCCcccCC
Q 005041 163 TRKAPYEDSSGIF-WDNDSLAGLLALELKADLLVLLSDVEGLYSGPPSEPNSKLIHTYIRAK-HQAEITFGDKSRVGRGG 240 (717)
Q Consensus 163 ~~~~~~~~~~~~~-~~sD~~A~~lA~~L~Ad~li~lTDV~GV~~~dP~~p~a~~i~~it~~e-~~~~~~~gs~~~~~tgg 240 (717)
+..|..+ +|+|++|+++|.+|+||+|+|+|||+|||++ |++++|++|+.+| +++++.. ..++||
T Consensus 191 ------~~~G~~~ni~~D~~Aa~lA~~L~Ad~Li~lTdV~GV~~~----~~~~lI~~it~~e~~~~li~~----~~~tgG 256 (464)
T 4ab7_A 191 ------TASGQMLNVNADVAAGELARVFEPLKIVYLNEKGGIING----STGEKISMINLDEEYDDLMKQ----SWVKYG 256 (464)
T ss_dssp ------CTTCBEEECCHHHHHHHHHHHHCCSEEEEEESSCSEECT----TTCCEECEEEHHHHHHHHHTC----SSCCHH
T ss_pred ------CCCCCEEEecHHHHHHHHHHHcCCCEEEEEecccccccC----CCCcCCcccCHHHHHHHHHhc----CCCCCc
Confidence 2244455 9999999999999999999999999999987 3589999999976 5555543 377999
Q ss_pred hHHHHHHHHHHHHc---CCcEEEEeCCCcchH-HHHhcCCcceEEEecC
Q 005041 241 MTAKVNAAYCAACA---GIPVVITSGFAMDSI-IKVLEGKRVGTLFHRD 285 (717)
Q Consensus 241 M~~Kv~aa~~a~~~---gi~v~I~~g~~~~~l-~~~~tg~~iGT~i~a~ 285 (717)
|+|||+++..|++. |.+++|++ ++.+ .++++++..||.+...
T Consensus 257 M~pKl~aa~aa~~~v~~g~~v~I~~---~~~ll~eLft~~g~GT~I~~~ 302 (464)
T 4ab7_A 257 TKLKIREIKELLDYLPRSSSVAIIN---VQDLQKELFTDSGAGTMIRRG 302 (464)
T ss_dssp HHHHHHHHHHHHTTSCTTCEEEEEE---STTHHHHTTSSSTTSEEEECC
T ss_pred HHHHHHHHHHHHHhcccCcEEEEec---ChHHHHHHhcCCCCceEEecC
Confidence 99999977666654 76799999 6666 7889999999999876
No 89
>3ab4_A Aspartokinase; aspartate kinase, concerted inhibition, alternative initiati amino-acid biosynthesis, ATP-binding; HET: LYS; 2.47A {Corynebacterium glutamicum} PDB: 3aaw_A* 3ab2_A
Probab=99.95 E-value=2.4e-27 Score=262.03 Aligned_cols=232 Identities=20% Similarity=0.237 Sum_probs=165.8
Q ss_pred CCeEEEEeCCcccccCCCcccHHHHHHHHHHHHHHHHCCCeEEEEecChhHhhHHHHhhhhccCCCcccccCccccchHH
Q 005041 16 VKRVVVKVGTAVVTRSDGRLALGRLGALLEQLKELNSQGFEIILVSSGAVGVGRQRLRYRKLVNSSLADLQKPQNELDGK 95 (717)
Q Consensus 16 ~~~iVvKiGGs~l~~~~~~~~~~~l~~l~~~Ia~l~~~G~~vviVhGGg~~~~~~~l~~~~~~~~~~~~l~~~~~~l~~~ 95 (717)
|+++|+||||+++.+. +.+.+++++|+.+++.|+++||||||++..++.+++......... . .-..+
T Consensus 1 m~~iViK~GGssl~~~------~~i~~v~~~i~~l~~~g~~~vvV~sa~g~~~~~ll~~~~~~~~~~-~------~~~~d 67 (421)
T 3ab4_A 1 MALVVQKYGGSSLESA------ERIRNVAERIVATKKAGNDVVVVCSAMGDTTDELLELAAAVNPVP-P------AREMD 67 (421)
T ss_dssp -CEEEEEECSGGGSSH------HHHHHHHHHHHHHHHTTCEEEEEECCSTTHHHHHHHHHHHHCSSC-C------HHHHH
T ss_pred CCeEEEEEChhHhCCH------HHHHHHHHHHHHHHhCCCCEEEEEcCCHHHHHHHHHHhhhhccCC-C------HHHHH
Confidence 3689999999999973 468999999999999999999999866666766665443221111 0 01233
Q ss_pred HHHHhchHHHHHHHHHHhhcCCCCc-----cee-EecccccCchhHhhHHHHHHHHHHhCCCeEEecCCCeeeccCCCCC
Q 005041 96 ACAAVGQSSLMALYDTLFSQLDVTS-----SQL-LVTDSDFRDEDFRKQLYDTVQSLLDLRVIPIFNENDAVSTRKAPYE 169 (717)
Q Consensus 96 ~~~a~G~~~~~~~~~~~l~~~g~~~-----~~~-~~~~~d~~~~~~~~~~~~~i~~lL~~g~vPVv~g~d~v~~~~~~~~ 169 (717)
.+.++|+.....++...|..+|+++ .++ ++++..+........+.+.++++|++|.|||++|+..+..
T Consensus 68 ~~~a~Ge~~~~~ll~~~L~~~G~~a~~l~~~~~~~~t~~~~~~~~v~~~~~~~i~~~l~~g~ipVv~g~~g~~~------ 141 (421)
T 3ab4_A 68 MLLTAGERISNALVAMAIESLGAEAQSFTGSQAGVLTTERHGNARIVDVTPGRVREALDEGKICIVAGFQGVNK------ 141 (421)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTCCEEECCCC-----------------CCHHHHHHHHHTTCEEEC--------------
T ss_pred HHHHHHHHHHHHHHHHHHHHCCCCeEEEehhhceEEeccCCCCeeechhhHHHHHHHHhCCCEEEEeCCcCcCC------
Confidence 5668898777777889999999876 343 3343333322212223578999999999999987432222
Q ss_pred CC-CCe----eecchHHHHHHHhhcCCCEEEEecccCccccCCCc-cccccccccccccchhHHHhcCCCCCcccCChHH
Q 005041 170 DS-SGI----FWDNDSLAGLLALELKADLLVLLSDVEGLYSGPPS-EPNSKLIHTYIRAKHQAEITFGDKSRVGRGGMTA 243 (717)
Q Consensus 170 ~~-~~~----~~~sD~~A~~lA~~L~Ad~li~lTDV~GV~~~dP~-~p~a~~i~~it~~e~~~~~~~gs~~~~~tggM~~ 243 (717)
. |.. ++++|++|+.+|.+|+||+|+++|||||||++||+ +|++++|++||++|+.++...| .+..
T Consensus 142 -~~g~~~tlgrg~sD~~Aa~lA~~l~Ad~l~i~TDVdGv~~~dPr~~~~a~~i~~is~~e~~el~~~G--------a~v~ 212 (421)
T 3ab4_A 142 -ETRDVTTLGRGGSDTTAVALAAALNADVCEIYSDVDGVYTADPRIVPNAQKLEKLSFEEMLELAAVG--------SKIL 212 (421)
T ss_dssp -----------CCHHHHHHHHHHHHTCSEEEEEESCCSCBSSCTTTSTTCCBCSEECHHHHHHHHHTT--------CCSS
T ss_pred -CCCceEEeCCCCHHHHHHHHHHHCCCCEEEEEECCCccCcCCCCCCCCCeEccccCHHHHHHHHhcC--------CcCc
Confidence 2 222 25999999999999999999999999999999995 8999999999999999877644 2455
Q ss_pred HHHHHHHHHHcCCcEEEEeCCCcchHHHHhcCCcceEEEecC
Q 005041 244 KVNAAYCAACAGIPVVITSGFAMDSIIKVLEGKRVGTLFHRD 285 (717)
Q Consensus 244 Kv~aa~~a~~~gi~v~I~~g~~~~~l~~~~tg~~iGT~i~a~ 285 (717)
|++++..|+++|+|++|.|++.| ..||++...
T Consensus 213 ~~~a~~~a~~~gi~v~I~n~~~~----------~~GT~I~~~ 244 (421)
T 3ab4_A 213 VLRSVEYARAFNVPLRVRSSYSN----------DPGTLIAGS 244 (421)
T ss_dssp CHHHHHHHHHTTCCEEEEESSSC----------CCCEEECSC
T ss_pred hHHHHHHHHHcCCCEEEecCcCC----------CCCeEEEec
Confidence 77899999999999999999876 469998765
No 90
>3s6k_A Acetylglutamate kinase; synthase, transferase; 2.80A {Xanthomonas campestris PV}
Probab=99.95 E-value=1.1e-28 Score=272.07 Aligned_cols=238 Identities=19% Similarity=0.170 Sum_probs=172.9
Q ss_pred CCeEEEEeCCcccccCCCcccHHHHHHHHHHHHHHHHCCCeEEEEecChhHhhHHHHhhhhccCCCccc-ccCcc---cc
Q 005041 16 VKRVVVKVGTAVVTRSDGRLALGRLGALLEQLKELNSQGFEIILVSSGAVGVGRQRLRYRKLVNSSLAD-LQKPQ---NE 91 (717)
Q Consensus 16 ~~~iVvKiGGs~l~~~~~~~~~~~l~~l~~~Ia~l~~~G~~vviVhGGg~~~~~~~l~~~~~~~~~~~~-l~~~~---~~ 91 (717)
++++|||+||++++++ +.+++++|+.+++.|.++|||||||+++++.+. ..++++.|.+ ++.+. |.
T Consensus 61 ~~~iViK~GG~v~~~~--------l~~va~dI~~l~~~G~~~VvVHGgg~~i~~~l~--~~gi~~~f~~G~RvTd~~~l~ 130 (467)
T 3s6k_A 61 KRFAVVKVGGAVLRDD--------LEALTSSLSFLQEVGLTPIVLHGAGPQLDAELS--AAGIEKQTVNGLRVTSPHALA 130 (467)
T ss_dssp TTSCCCCCCHHHHTTC--------CHHHHHHHHHHHTTSCCCCCCCCCCHHHHHHHH--TTSCCCCCCSSSCCBCHHHHH
T ss_pred CcEEEEEEChHHhhhH--------HHHHHHHHHHHHHCCCcEEEEECCChHHHHHHH--HcCCCccccCCccCCCHHHHH
Confidence 4789999999977754 589999999999999999999999999998653 3355556644 33332 22
Q ss_pred chHHHHHHhchHHHHHHHHHHhhcCCCCccee----E----ecccccCchhH-hhHHHHHHHHHHhCCCeEEecCCCeee
Q 005041 92 LDGKACAAVGQSSLMALYDTLFSQLDVTSSQL----L----VTDSDFRDEDF-RKQLYDTVQSLLDLRVIPIFNENDAVS 162 (717)
Q Consensus 92 l~~~~~~a~G~~~~~~~~~~~l~~~g~~~~~~----~----~~~~d~~~~~~-~~~~~~~i~~lL~~g~vPVv~g~d~v~ 162 (717)
...++ +|+... .+...|...|+++..+ + ++..|+...+. ...+.+.|+.+|++|.|||+++++
T Consensus 131 vv~~~---~g~vn~--~Lv~aL~~~G~~Av~lsg~~~~a~~~~~~d~g~~G~I~~v~~~~i~~lL~~g~IpVi~pvg--- 202 (467)
T 3s6k_A 131 IVRKV---FQASNL--KLVEALQQNGARATSITGGVFEAEYLNRDTYGLVGEVKAVNLAPIEASLQAGSIPVITSLG--- 202 (467)
T ss_dssp HHHHH---HHHHHH--HHHHHHHHHTCCBCCCCSSSBCCCBSCSSSSBSBBCCCCBCCHHHHTHHHHTCBCCCCSCC---
T ss_pred HHHHH---HHHHHH--HHHHHHHhCCCCceEEcCccEEEEeccCcccCccceEEEEcHHHHHHHHHCCCEEEEECce---
Confidence 22222 232211 2223444455444322 1 11223332222 124578999999999999998522
Q ss_pred ccCCCCCCCCCee-ecchHHHHHHHhhcCCCEEEEecccCccccCCCcccccccccccccc-chhHHHhcCCCCCcccCC
Q 005041 163 TRKAPYEDSSGIF-WDNDSLAGLLALELKADLLVLLSDVEGLYSGPPSEPNSKLIHTYIRA-KHQAEITFGDKSRVGRGG 240 (717)
Q Consensus 163 ~~~~~~~~~~~~~-~~sD~~A~~lA~~L~Ad~li~lTDV~GV~~~dP~~p~a~~i~~it~~-e~~~~~~~gs~~~~~tgg 240 (717)
.+..|..+ +|+|++|+++|.+|+||+|+|+|||+|||+++ +++|++|+.+ |+..++.. ..++||
T Consensus 203 -----~~~~G~~~~i~~D~~Aa~lA~~L~Ad~LiilTdv~Gv~~~~-----~~lI~~i~~~~e~~~l~~~----~~~tGG 268 (467)
T 3s6k_A 203 -----ETPSGQILNVNADFAANELVQELQPYKIIFLTGTGGLLDAE-----GKLIDSINLSTEYDHLMQQ----PWINGG 268 (467)
T ss_dssp -----CCSSSCCCBCCHHHHHHHHHHHHCCSSCCCCCSSCSCCCSS-----CCCCCCCCTTTTTHHHHTS----SSCCSH
T ss_pred -----ECCCCcEEecCHHHHHHHHHHhcCCCEEEEEecccceeCCC-----CCCccccChHHHHHHHHhc----CCCCCc
Confidence 12234444 99999999999999999999999999999864 7999999986 67766543 367999
Q ss_pred hHHHHHHHHHHHHcCCcEEEEeCCCcchH-HHHhcCCcceEEEecC
Q 005041 241 MTAKVNAAYCAACAGIPVVITSGFAMDSI-IKVLEGKRVGTLFHRD 285 (717)
Q Consensus 241 M~~Kv~aa~~a~~~gi~v~I~~g~~~~~l-~~~~tg~~iGT~i~a~ 285 (717)
|.+|+++|..+++.+.+++|++++.++.+ .++++++..||.+...
T Consensus 269 M~~Kl~aa~~a~~gv~~~~iv~g~~~~~Ll~eLft~~g~GT~i~~~ 314 (467)
T 3s6k_A 269 MRVKIEQIKDLLDRLPLESSVSITRPADLAKELFTHKGSGTLVRRG 314 (467)
T ss_dssp HHHHHHHHHHHHTTSCSSCCBCCCCTTTHHHHHHSSCTTSCCBCCC
T ss_pred hHHHHHHHHHHHhCCCcEEEEEeCCchHHHHHHhcCCCcceEEeCC
Confidence 99999999998874334999999999998 6789999999998765
No 91
>3l76_A Aspartokinase; allostery, ACT domains, kinase transferase; HET: LYS; 2.54A {Synechocystis}
Probab=99.93 E-value=4.9e-26 Score=260.78 Aligned_cols=231 Identities=19% Similarity=0.208 Sum_probs=171.6
Q ss_pred CCeEEEEeCCcccccCCCcccHHHHHHHHHHHHHHHHCCCeEEEEecChhHhhHHHHhhhhccCCCcccccCccccchHH
Q 005041 16 VKRVVVKVGTAVVTRSDGRLALGRLGALLEQLKELNSQGFEIILVSSGAVGVGRQRLRYRKLVNSSLADLQKPQNELDGK 95 (717)
Q Consensus 16 ~~~iVvKiGGs~l~~~~~~~~~~~l~~l~~~Ia~l~~~G~~vviVhGGg~~~~~~~l~~~~~~~~~~~~l~~~~~~l~~~ 95 (717)
|+++|+||||+++.+. +.+.+++++|+.+++.|+++||||||.+..++.++++......++ .. -..+
T Consensus 1 m~~iViK~GGssl~~~------~~i~~va~~i~~~~~~g~~vvvV~sa~G~~t~~ll~~~~~~~~~~---~~----~~~d 67 (600)
T 3l76_A 1 MALIVQKFGGTSVGTV------ERIQAVAQRIKRTVQGGNSLVVVVSAMGKSTDVLVDLAQQISPNP---CR----REMD 67 (600)
T ss_dssp -CEEEEEECSGGGSSH------HHHHHHHHHHHHHHHTTCEEEEEECCSSTHHHHHHHHHHHHCSSC---CH----HHHH
T ss_pred CceEEEEeCCCCcCCH------HHHHHHHHHHHHHHHCCCcEEEEECCCcHHHHHHHHHHHhhccCC---CH----HHHH
Confidence 3689999999999974 468999999999999999999999994445555544332211110 10 1234
Q ss_pred HHHHhchHHHHHHHHHHhhcCCCCcc-----eeEe-cccccCchhHhh-HHHHHHHHHHhCCCeEEecCCCeeeccCCCC
Q 005041 96 ACAAVGQSSLMALYDTLFSQLDVTSS-----QLLV-TDSDFRDEDFRK-QLYDTVQSLLDLRVIPIFNENDAVSTRKAPY 168 (717)
Q Consensus 96 ~~~a~G~~~~~~~~~~~l~~~g~~~~-----~~~~-~~~d~~~~~~~~-~~~~~i~~lL~~g~vPVv~g~d~v~~~~~~~ 168 (717)
++.++|+...+.++..+|..+|+++. |..+ +++.+. ...+. .+++.++++|+.|.|||++|+.+...
T Consensus 68 ~l~s~Ge~~s~~l~~~~l~~~G~~a~~l~~~~~~l~~~~~~~-~~~~~~~~~~~i~~ll~~g~IpVv~Gf~g~~~----- 141 (600)
T 3l76_A 68 MLLSTGEQVSIALLSLALQEIDQPAISLTGAQVGIVTEAEHS-RARILEIRPDRLEHHLREGKVVVVAGFQGISS----- 141 (600)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTCCEEEEEGGGTEEEEC--------CCEEEECCHHHHHTTTCEEEEECEEEC-------
T ss_pred HHHHHhHHHHHHHHHHHHHhCCCCeEEechhHcceEEecCCC-CceeccccHHHHHHHHhCCCEEEEECCeecCC-----
Confidence 78899998888899999999998854 3323 333222 11221 12367999999999999987221111
Q ss_pred CCCC--C----eeecchHHHHHHHhhcCCCEEEEecccCccccCCCc-cccccccccccccchhHHHhcCCCCCcccCCh
Q 005041 169 EDSS--G----IFWDNDSLAGLLALELKADLLVLLSDVEGLYSGPPS-EPNSKLIHTYIRAKHQAEITFGDKSRVGRGGM 241 (717)
Q Consensus 169 ~~~~--~----~~~~sD~~A~~lA~~L~Ad~li~lTDV~GV~~~dP~-~p~a~~i~~it~~e~~~~~~~gs~~~~~tggM 241 (717)
.| . .++++|++|+.+|.+|+||+|+++|||||||++||+ +|++++|++|+++|+.++... ++++|
T Consensus 142 --~g~~~~~tlgrGgsD~~Aa~lA~~l~Ad~l~i~TDVdGv~~~dPr~~~~a~~i~~is~~e~~ela~~------G~~vm 213 (600)
T 3l76_A 142 --VEHLEITTLGRGGSDTSAVALAAALKADFCEIYTDVPGILTTDPRLVPEAQLMAEITCDEMLELASL------GAKVL 213 (600)
T ss_dssp ----CEEEECCCTTHHHHHHHHHHHHHTCSEEEEEESSSSCBSSCTTTCTTCCBCSEEEHHHHHHTGGG------GTTTC
T ss_pred --CCCEEEecCCCCChHHHHHHHHHHcCCCEEEEEECCCcCCCCCCCCCCCCeEeeEEcHHHHHHHHhC------CCCcc
Confidence 22 1 126789999999999999999999999999999995 999999999999999886653 47999
Q ss_pred HHHHHHHHHHHHcCCcEEEEeCCCcchHHHHhcCCcceEEEecC
Q 005041 242 TAKVNAAYCAACAGIPVVITSGFAMDSIIKVLEGKRVGTLFHRD 285 (717)
Q Consensus 242 ~~Kv~aa~~a~~~gi~v~I~~g~~~~~l~~~~tg~~iGT~i~a~ 285 (717)
.| +++..|.++|+|++|.|++.+ ..||++...
T Consensus 214 ~p--~a~~~a~~~gipv~I~n~~~~----------~~GT~I~~~ 245 (600)
T 3l76_A 214 HP--RAVEIARNYGIPLVVRSSWSD----------EPGTKVVAP 245 (600)
T ss_dssp CH--HHHHHHHHHTCCEEEEETTCC----------SCCEEEECC
T ss_pred HH--HHHHHHHHCCCeEEEEECCCC----------CCCeEEecC
Confidence 99 899999999999999998864 368888765
No 92
>3c1m_A Probable aspartokinase; allosteric inhibition, threonine-sensitive, ACT DOMA amino-acid biosynthesis, threonine biosynthesis; HET: ANP; 2.30A {Methanocaldococcus jannaschii} PDB: 3c1n_A 3c20_A 2hmf_A*
Probab=99.90 E-value=4.3e-23 Score=230.78 Aligned_cols=237 Identities=20% Similarity=0.289 Sum_probs=177.2
Q ss_pred eEEEEeCCcccccCCCcccHHHHHHHHHHHHHHHHCCC-eEEEEecChhHhhHHHHhhhhccCC--Ccc---c-------
Q 005041 18 RVVVKVGTAVVTRSDGRLALGRLGALLEQLKELNSQGF-EIILVSSGAVGVGRQRLRYRKLVNS--SLA---D------- 84 (717)
Q Consensus 18 ~iVvKiGGs~l~~~~~~~~~~~l~~l~~~Ia~l~~~G~-~vviVhGGg~~~~~~~l~~~~~~~~--~~~---~------- 84 (717)
++|.||||+++.+. +.+.+.++.|... +.|+ ++|+|.|+.+.++..+++....... ... .
T Consensus 2 ~~V~KFGGtSv~~~------~~i~~va~ii~~~-~~~~~~~vVVvSA~g~~Td~L~~~~~~~~~~~~~~~~~~~~~~i~~ 74 (473)
T 3c1m_A 2 TTVMKFGGTSVGSG------ERIRHVAKIVTKR-KKEDDDVVVVVSAMSEVTNALVEISQQALDVRDIAKVGDFIKFIRE 74 (473)
T ss_dssp CEEEEECTTTTSSH------HHHHHHHHHHHHH-HTTCSCEEEEECCSTTHHHHHHHHHHHHHHTCCHHHHHHHHHHHHH
T ss_pred CEEEEeCCcccCCH------HHHHHHHHHHHHh-hcCCCCEEEEEcCChhhHHHHHHHHHHhhcccChHHHHHHHHHHHH
Confidence 58999999999974 4578888888765 6788 9999999998888877654432211 000 0
Q ss_pred --------ccCc----c--------------------------ccchHHHHHHhchHHHHHHHHHHhhcCCCCcc-----
Q 005041 85 --------LQKP----Q--------------------------NELDGKACAAVGQSSLMALYDTLFSQLDVTSS----- 121 (717)
Q Consensus 85 --------l~~~----~--------------------------~~l~~~~~~a~G~~~~~~~~~~~l~~~g~~~~----- 121 (717)
+... + ..-....+.++|+.....++...|...|+++.
T Consensus 75 ~~~~~~~~l~~~~~~~~~~~~~i~~~~~~l~~~l~~~~~~~~~~~~~~d~~~~~ge~~s~~l~~~~L~~~G~~a~~l~~~ 154 (473)
T 3c1m_A 75 KHYKAIEEAIKSEEIKEEVKKIIDSRIEELEKVLIGVAYLGELTPKSRDYILSFGERLSSPILSGAIRDLGEKSIALEGG 154 (473)
T ss_dssp HHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCCHHHHHHHHHHHHHHHHHHHHHHHHHTTCCEEEECHH
T ss_pred HHHHHHHHhccchhhhhhhHHHHHHHHHHHHHHHHhhhhcccCCHHHHHHHHHHHHHHHHHHHHHHHHhCCCCeEEEEch
Confidence 0000 0 00012345567777666677889999998774
Q ss_pred ee-EecccccCchhH-hhHHHHHHHHHHhCCCeEEecCCCeeeccCCCCCCCCCe----eecchHHHHHHHhhcCCCEEE
Q 005041 122 QL-LVTDSDFRDEDF-RKQLYDTVQSLLDLRVIPIFNENDAVSTRKAPYEDSSGI----FWDNDSLAGLLALELKADLLV 195 (717)
Q Consensus 122 ~~-~~~~~d~~~~~~-~~~~~~~i~~lL~~g~vPVv~g~d~v~~~~~~~~~~~~~----~~~sD~~A~~lA~~L~Ad~li 195 (717)
+. ++++.++..... +..+.+.++.+|++|.|||++|+.+... .|.. ++++|++|+.+|.+|+||+|+
T Consensus 155 ~~~i~t~~~~~~~~~~~~~~~~~i~~ll~~g~ipVv~G~~g~~~-------~g~~~~l~rg~sD~~Aa~lA~~l~Ad~l~ 227 (473)
T 3c1m_A 155 EAGIITDNNFGSARVKRLEVKERLLPLLKEGIIPVVTGFIGTTE-------EGYITTLGRGGSDYSAALIGYGLDADIIE 227 (473)
T ss_dssp HHTEEECSCTTSCCEEEECHHHHHHHHHHTTCEEEEESSEEEET-------TSCEEECCTTTHHHHHHHHHHHTTCSEEE
T ss_pred heeEEEccCCCCccccHhhhHHHHHHHHhCCcEEEEeCCcccCC-------CCCEEEeCCCChHHHHHHHHHHcCCCEEE
Confidence 33 566666554333 3456789999999999999997433322 2222 269999999999999999999
Q ss_pred EecccCccccCCCc-cccccccccccccchhHHHhcCCCCCcccCChHHHHHHHHHHHHcCCcEEEEeCCCcchHHHHhc
Q 005041 196 LLSDVEGLYSGPPS-EPNSKLIHTYIRAKHQAEITFGDKSRVGRGGMTAKVNAAYCAACAGIPVVITSGFAMDSIIKVLE 274 (717)
Q Consensus 196 ~lTDV~GV~~~dP~-~p~a~~i~~it~~e~~~~~~~gs~~~~~tggM~~Kv~aa~~a~~~gi~v~I~~g~~~~~l~~~~t 274 (717)
++|||||||++||+ +|++++|++|+++|+.++...| .++|.|| ++..+.++|+|++|+|++.|+
T Consensus 228 i~TDVdGv~~~dP~~~~~a~~i~~is~~e~~~l~~~g------~~~m~~~--a~~~a~~~gi~v~I~~~~~~~------- 292 (473)
T 3c1m_A 228 IWTDVSGVYTTDPRLVPTARRIPKLSYIEAMELAYFG------AKVLHPR--TIEPAMEKGIPILVKNTFEPE------- 292 (473)
T ss_dssp EEESSSSCBSSCTTTCTTCCBCSEEEHHHHHHHHHTT------CTTSCGG--GHHHHHHHTCCEEEEETTSTT-------
T ss_pred EeeCCCcceeCCCCCCCCCeEecccCHHHHHHHHhcC------CcchHHH--HHHHHHHcCCEEEEEecCCCC-------
Confidence 99999999999995 8999999999999999876544 5799996 888899999999999999885
Q ss_pred CCcceEEEecC
Q 005041 275 GKRVGTLFHRD 285 (717)
Q Consensus 275 g~~iGT~i~a~ 285 (717)
..||++...
T Consensus 293 --~~GT~i~~~ 301 (473)
T 3c1m_A 293 --SEGTLITND 301 (473)
T ss_dssp --SCCEEEESC
T ss_pred --CceEEEecc
Confidence 579998765
No 93
>2cdq_A Aspartokinase; aspartate kinase, amino acid metabolism, ACT domain, alloste S-adenosylmethionine, lysine, allosteric effector, plant; HET: TAR SAM LYS; 2.85A {Arabidopsis thaliana} SCOP: c.73.1.3 d.58.18.10 d.58.18.10
Probab=99.89 E-value=1.8e-22 Score=226.13 Aligned_cols=244 Identities=14% Similarity=0.149 Sum_probs=174.3
Q ss_pred HhhccCCeEEEEeCCcccccCCCcccHHHHHHHHHHHHHHHHCCCeEEEEecChhHhhHHHHhhhhccCCC------cc-
Q 005041 11 DFLKNVKRVVVKVGTAVVTRSDGRLALGRLGALLEQLKELNSQGFEIILVSSGAVGVGRQRLRYRKLVNSS------LA- 83 (717)
Q Consensus 11 ~~~~~~~~iVvKiGGs~l~~~~~~~~~~~l~~l~~~Ia~l~~~G~~vviVhGGg~~~~~~~l~~~~~~~~~------~~- 83 (717)
++=..++++|.||||+++.+. +.+.+.++.|... .++++|+|+|+.+.++..+++........ +.
T Consensus 21 ~~~~~~~~~V~KFGGTSva~~------e~i~~va~iI~~~--~~~~~vVVVSA~g~~Td~Ll~~~~~~~~~~~~~~~~~~ 92 (510)
T 2cdq_A 21 EVDEKGITCVMKFGGSSVASA------ERMKEVADLILTF--PEESPVIVLSAMGKTTNNLLLAGEKAVSCGVSNASEIE 92 (510)
T ss_dssp ----CCCCEEEEECTGGGSSH------HHHHHHHHHHHHC--TTCCEEEEECCSTTHHHHHHHHHHHHTTTCTTTGGGCH
T ss_pred ccCCCCCeEEEEECCcccCCH------HHHHHHHHHHHhc--cCCCEEEEEcCCCCCchHHHHHHHHHhhccccchhHHH
Confidence 333445789999999999984 4577777777532 36789999999888888776544321000 00
Q ss_pred ---c-----------c--cC--------------------cc-ccchHHHHHHhchHHHHHHHHHHhhcCCCCc-----c
Q 005041 84 ---D-----------L--QK--------------------PQ-NELDGKACAAVGQSSLMALYDTLFSQLDVTS-----S 121 (717)
Q Consensus 84 ---~-----------l--~~--------------------~~-~~l~~~~~~a~G~~~~~~~~~~~l~~~g~~~-----~ 121 (717)
. + +. .+ ..-..+.+.++|+.....++...|...|+++ .
T Consensus 93 ~~~~i~~~h~~i~~~l~~~~~~i~~~~~~l~~~l~~~~~~~~~~~r~~d~l~s~GE~~s~~ll~~~L~~~Gi~A~~l~~~ 172 (510)
T 2cdq_A 93 ELSIIKELHIRTVKELNIDPSVILTYLEELEQLLKGIAMMKELTLRTRDYLVSFGECLSTRIFAAYLNTIGVKARQYDAF 172 (510)
T ss_dssp HHHHHHHHHHHHHHHHTCCSHHHHHHHHHHHHHHHHHHHHTCCCHHHHHHHHHHHHHHHHHHHHHHHHHTTCCEEEECGG
T ss_pred HHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHhhhhccccCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEhh
Confidence 0 0 00 00 0012357889999888888999999999875 4
Q ss_pred ee-EecccccCchh----HhhHHHHHHHH-HHhCCCeEEecCCCeeeccCCCCCCCCC-e---eecchHHHHHHHhhcCC
Q 005041 122 QL-LVTDSDFRDED----FRKQLYDTVQS-LLDLRVIPIFNENDAVSTRKAPYEDSSG-I---FWDNDSLAGLLALELKA 191 (717)
Q Consensus 122 ~~-~~~~~d~~~~~----~~~~~~~~i~~-lL~~g~vPVv~g~d~v~~~~~~~~~~~~-~---~~~sD~~A~~lA~~L~A 191 (717)
++ ++++.++.+.. .+.+..+.+.+ |++.|.|||++|+-+... ..|. . ++++|++|+.+|.+|+|
T Consensus 173 ~~~l~t~~~~~~~~i~~~~~~~~~~~l~~~Ll~~g~IpVv~Gf~g~~~------~~g~ittlgrGgsD~tAa~lA~~l~A 246 (510)
T 2cdq_A 173 EIGFITTDDFTNGDILEATYPAVAKRLYDDWMHDPAVPIVTGFLGKGW------KTGAVTTLGRGGSDLTATTIGKALGL 246 (510)
T ss_dssp GTTCEECSCSTTCCBCTTHHHHHHHHHHHHHHHSCCEEEEESSEEEET------TTCCEEECCTTHHHHHHHHHHHHHTC
T ss_pred HeeEEEecCCCccchhhHHHHHHHHHHHHHHHhCCcEEEEeCccccCC------CCCceEEeCCCChHHHHHHHHHHcCC
Confidence 54 56666655432 23334556664 789999999987333221 0122 1 26699999999999999
Q ss_pred CEEEEecccCccccCCCc-cccccccccccccchhHHHhcCCCCCcccCChHHHHHHHHHHHHcCCcEEEEeCCCcchHH
Q 005041 192 DLLVLLSDVEGLYSGPPS-EPNSKLIHTYIRAKHQAEITFGDKSRVGRGGMTAKVNAAYCAACAGIPVVITSGFAMDSII 270 (717)
Q Consensus 192 d~li~lTDV~GV~~~dP~-~p~a~~i~~it~~e~~~~~~~gs~~~~~tggM~~Kv~aa~~a~~~gi~v~I~~g~~~~~l~ 270 (717)
|.|+++|||||||+.||+ +|++++|++|+++|+.++... +.++|+|| ++..|.++|||++|.|++.|+
T Consensus 247 d~l~i~TDVdGVytaDPr~v~~A~~I~~Is~~E~~ela~~------Ga~vmh~~--a~~~a~~~gIpv~I~n~~~p~--- 315 (510)
T 2cdq_A 247 KEIQVWKDVDGVLTCDPTIYKRATPVPYLTFDEAAELAYF------GAQVLHPQ--SMRPAREGEIPVRVKNSYNPK--- 315 (510)
T ss_dssp SEEEEEESSSSSBSSCTTTCTTCCBCCEEEHHHHHHHHHH------HSSCCCHH--HHHHHHHHTCCEEEEETTSTT---
T ss_pred CEEEEEeCCCCcCCCCCCCCCCCEEecEeCHHHHHHHHhc------CcchhHHH--HHHHHHHCCCeEEEEccCcCC---
Confidence 999999999999999995 999999999999999876543 36789875 888899999999999999885
Q ss_pred HHhcCCcceEEEecC
Q 005041 271 KVLEGKRVGTLFHRD 285 (717)
Q Consensus 271 ~~~tg~~iGT~i~a~ 285 (717)
..||++...
T Consensus 316 ------~~GT~I~~~ 324 (510)
T 2cdq_A 316 ------APGTIITKT 324 (510)
T ss_dssp ------SCCEEEESC
T ss_pred ------CCCeEEecc
Confidence 569988765
No 94
>2j0w_A Lysine-sensitive aspartokinase 3; feedback inhibition, allosteric regulation, ACT domain, transferase, amino acid biosynthesis; HET: ADP; 2.5A {Escherichia coli} SCOP: c.73.1.3 d.58.18.10 d.58.18.10 PDB: 2j0x_A*
Probab=99.89 E-value=1e-22 Score=225.47 Aligned_cols=233 Identities=20% Similarity=0.178 Sum_probs=169.5
Q ss_pred CCeEEEEeCCcccccCCCcccHHHHHHHHHHHHHHHHCCCeEEEEecChhHhhHHHHhhhhccC--------CC----cc
Q 005041 16 VKRVVVKVGTAVVTRSDGRLALGRLGALLEQLKELNSQGFEIILVSSGAVGVGRQRLRYRKLVN--------SS----LA 83 (717)
Q Consensus 16 ~~~iVvKiGGs~l~~~~~~~~~~~l~~l~~~Ia~l~~~G~~vviVhGGg~~~~~~~l~~~~~~~--------~~----~~ 83 (717)
++++|.||||+++.+. +.+.++++.|.. ...++|+|+|+.+.++..+++...... .. +.
T Consensus 2 m~~~V~KFGGTSv~~~------e~i~~va~ii~~---~~~~~vVVvSA~g~~Td~L~~~~~~~~~~~~~~~i~~i~~~~~ 72 (449)
T 2j0w_A 2 SEIVVSKFGGTSVADF------DAMNRSADIVLS---DANVRLVVLSASAGITNLLVALAEGLEPGERFEKLDAIRNIQF 72 (449)
T ss_dssp -CCEEEEECSGGGSSH------HHHHHHHHHHTS---CTTEEEEEECCCTTHHHHHHHHTTCCCHHHHHHHHHHHHHHHH
T ss_pred CccEEEEECCccCCCH------HHHHHHHHHHHh---cCCCEEEEeCCCCchHHHHHHHHHHHhcchHHHHHHHHHHHHH
Confidence 5789999999999984 346666666643 345899999999888887766443210 00 00
Q ss_pred c----ccC------------------------ccccchHHHHHHhchHHHHHHHHHHhhcCCCCc-----ceeEeccccc
Q 005041 84 D----LQK------------------------PQNELDGKACAAVGQSSLMALYDTLFSQLDVTS-----SQLLVTDSDF 130 (717)
Q Consensus 84 ~----l~~------------------------~~~~l~~~~~~a~G~~~~~~~~~~~l~~~g~~~-----~~~~~~~~d~ 130 (717)
+ +.. ....-..+.+.++|+..++.++...|..+|+++ .++++++.+|
T Consensus 73 ~i~~~l~~~~~~~~~i~~~~~~l~~l~~~~~~~~~~~~~d~l~s~Ge~~s~~l~~~~L~~~Gi~a~~l~~~~~l~t~~~~ 152 (449)
T 2j0w_A 73 AILERLRYPNVIREEIERLLENITVLAEAAALATSPALTDELVSHGELMSTLLFVEILRERDVQAQWFDVRKVMRTNDRF 152 (449)
T ss_dssp HHHTTSSSTHHHHHHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTTSCCEEECCGGGTCBBCSCT
T ss_pred HHHHHhcccHHHHHHHHHHHHHHHHHhhhhccCcCHHHHHHHHHHHHHHHHHHHHHHHHHCCCcEEEEchHHheeecCCC
Confidence 0 000 000112467889999999989999999999887 6666677776
Q ss_pred CchhHhh-----HHHHHHHHHHhCCCeEEecCCCeeeccCCCCCCCCCe----eecchHHHHHHHhhcCCCEEEEecccC
Q 005041 131 RDEDFRK-----QLYDTVQSLLDLRVIPIFNENDAVSTRKAPYEDSSGI----FWDNDSLAGLLALELKADLLVLLSDVE 201 (717)
Q Consensus 131 ~~~~~~~-----~~~~~i~~lL~~g~vPVv~g~d~v~~~~~~~~~~~~~----~~~sD~~A~~lA~~L~Ad~li~lTDV~ 201 (717)
.+...+. +..+.+..+++.+ |||++|+-+... .|.. ++++|++|+.+|.+|+||+|+++||||
T Consensus 153 ~~~~~~~~~~~~~~~~~l~~l~~~~-IpVv~Gf~g~~~-------~g~~ttl~rGgsD~~Aa~lA~~l~Ad~l~i~TDVd 224 (449)
T 2j0w_A 153 GRAEPDIAALAELAALQLLPRLNEG-LVITQGFIGSEN-------KGRTTTLGRGGSDYTAALLAEALHASRVDIWTDVP 224 (449)
T ss_dssp TSCCBCHHHHHHHHHHHTHHHHHHS-EEEEESSEEECT-------TSCEEECCTTHHHHHHHHHHHHTTCSEEEEEESSS
T ss_pred CCccccHhHhHHHHHHHHHHHhcCC-EEEEeCCeeeCC-------CCCEEEeCCCChHHHHHHHHHHCCCCEEEEccccC
Confidence 6543321 2234666777666 999987332221 2322 256999999999999999999999999
Q ss_pred ccccCCCc-cccccccccccccchhHHHhcCCCCCcccCChHHHH---HHHHHHHHcCCcEEEEeCCCcchHHHHhcCCc
Q 005041 202 GLYSGPPS-EPNSKLIHTYIRAKHQAEITFGDKSRVGRGGMTAKV---NAAYCAACAGIPVVITSGFAMDSIIKVLEGKR 277 (717)
Q Consensus 202 GV~~~dP~-~p~a~~i~~it~~e~~~~~~~gs~~~~~tggM~~Kv---~aa~~a~~~gi~v~I~~g~~~~~l~~~~tg~~ 277 (717)
|||++||+ +|++++|++|+++|+.++...| +|+ +++..|.++|+|++|.|++.|+ .
T Consensus 225 Gv~~~DPr~~~~a~~i~~is~~e~~ela~~G-----------~kvlh~~a~~~a~~~gi~v~I~~~~~p~---------~ 284 (449)
T 2j0w_A 225 GIYTTDPRVVSAAKRIDEIAFAEAAEMATFG-----------AKVLHPATLLPAVRSDIPVFVGSSKDPR---------A 284 (449)
T ss_dssp SEESSCTTTCTTCCEESEEEHHHHHHHHHTT-----------CTTSCTTTHHHHHHHTCCEEEEESSCTT---------S
T ss_pred CcCcCCCCCCCCCEEccCccHHHHHHHHhcC-----------CccchHHHHHHHHHCCCeEEEEECCCCC---------C
Confidence 99999995 8999999999999998876533 255 6888899999999999999885 5
Q ss_pred ceEEEecC
Q 005041 278 VGTLFHRD 285 (717)
Q Consensus 278 iGT~i~a~ 285 (717)
.||++...
T Consensus 285 ~GT~I~~~ 292 (449)
T 2j0w_A 285 GGTLVCNK 292 (449)
T ss_dssp CCEEEESC
T ss_pred CeeEEecc
Confidence 79998765
No 95
>3tvi_A Aspartokinase; structural genomics, ACT domains, regulatory domains, kinase transferase, PSI-2, protein structure initiative; HET: LYS; 3.00A {Clostridium acetobutylicum}
Probab=99.88 E-value=2.9e-22 Score=220.87 Aligned_cols=234 Identities=16% Similarity=0.173 Sum_probs=168.8
Q ss_pred CeEEEEeCCcccccCCCcccHHHHHHHHHHHHHHHHCCCeEEEEecChhH-------hhHHHHhhhhccCC--Cccc---
Q 005041 17 KRVVVKVGTAVVTRSDGRLALGRLGALLEQLKELNSQGFEIILVSSGAVG-------VGRQRLRYRKLVNS--SLAD--- 84 (717)
Q Consensus 17 ~~iVvKiGGs~l~~~~~~~~~~~l~~l~~~Ia~l~~~G~~vviVhGGg~~-------~~~~~l~~~~~~~~--~~~~--- 84 (717)
++.|.||||+++.+. +.+.+.++.|.. .+.++++|.|+.+. ++..+++....... .+..
T Consensus 3 ~m~V~KFGGtSva~~------e~i~~Va~iI~~---~~~~~vVVVSA~gk~~~~d~g~Td~Li~~a~~~~~~~~~~~~~~ 73 (446)
T 3tvi_A 3 KIVVTKFGGSSLADS------NQFKKVKGIIDS---DANRKYIIPSAPGKRTNKDYKITDLLYLCNAHVKNGIPFDDVFK 73 (446)
T ss_dssp -CEEEEECGGGGSSH------HHHHHHHHHHTT---CTTEEEEEECSCCCSSSSSCCHHHHHHHHHHHHHTTCCCHHHHH
T ss_pred ccEEEEeCccccCCH------HHHHHHHHHHHh---cCCCEEEEECCCCCCCCCCcchHHHHHHHHHHhhcCccHHHHHH
Confidence 468999999999984 356777776653 47789999999763 66666554432211 1100
Q ss_pred -ccC-----------cc--------------ccchHHHHHHhchHHHHHHHHHHhhcCCCCcceeEecccccCchhHhhH
Q 005041 85 -LQK-----------PQ--------------NELDGKACAAVGQSSLMALYDTLFSQLDVTSSQLLVTDSDFRDEDFRKQ 138 (717)
Q Consensus 85 -l~~-----------~~--------------~~l~~~~~~a~G~~~~~~~~~~~l~~~g~~~~~~~~~~~d~~~~~~~~~ 138 (717)
+.. .. ..-....+.+.|+.....++...|....+++.++.+++. ........
T Consensus 74 ~i~~~~~~i~~~L~~~~~~~~~l~~~~~~l~~~~~~D~lls~GE~lS~~lla~~l~a~~~~~~~~~~~~~--~~~~~~~~ 151 (446)
T 3tvi_A 74 LISQRYTEIVSELNIDMDIAYYLEKVKKNIENGASSDYAASRGEYLNGVILAKYLNAEFIDAAEVIFFDK--SGCFDEKK 151 (446)
T ss_dssp HHHHHHHHHHHHHTCCSCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHTCEECCGGGTCBBCC----CBCHHH
T ss_pred HHHHHHHHHHHHhcccHHHHHHHHHHHHHHhcCccHHHHHHhHHHHHHHHHHHHhcceeECHHHheeeCC--CCceehHh
Confidence 000 00 000134677999988888888889888888888766644 22222334
Q ss_pred HHHHHHHHHhCCCeEEecCCCeeeccCCCCCCCCCe--e--ecchHHHHHHHhhcCCCEEEEecccCccccCCCc-cccc
Q 005041 139 LYDTVQSLLDLRVIPIFNENDAVSTRKAPYEDSSGI--F--WDNDSLAGLLALELKADLLVLLSDVEGLYSGPPS-EPNS 213 (717)
Q Consensus 139 ~~~~i~~lL~~g~vPVv~g~d~v~~~~~~~~~~~~~--~--~~sD~~A~~lA~~L~Ad~li~lTDV~GV~~~dP~-~p~a 213 (717)
..+.+.++|+.|.|||++|+.+... .+.. + +++|++|+.+|.+|+||+|+++|||||||++||+ +|++
T Consensus 152 ~~~~l~~~l~~~~v~Vv~Gf~g~~~-------~g~~~tl~rGgsD~~Aa~lA~~l~A~~~~i~TDVdGvyt~dP~~~~~a 224 (446)
T 3tvi_A 152 SYEKIKEKVLSCNKAVIPGFYGSSF-------NGDVKTFSRGGSDVTGSIISAGVNADLYENWTDVSGFLMADPRIVENP 224 (446)
T ss_dssp HHHHHHHHTTTCSSEECCCSEEECT-------TSCEEECSSSTTHHHHHHHHHHTTCSEEEEEESSSSCBSSCTTTSSSC
T ss_pred hHHHHHHHHhcCCeEEeeCceecCC-------CCCeEEEccCCchHHHHHHHHHcCCCEEEEEeCCCccCCCCCCcCCCC
Confidence 5688999999999999987332221 2221 2 6799999999999999999999999999999995 9999
Q ss_pred cccccccccchhHHHhcCCCCCcccCChHHHHHHHHHHHHcCCcEEEEeCCCcchHHHHhcCCcceEEEecC
Q 005041 214 KLIHTYIRAKHQAEITFGDKSRVGRGGMTAKVNAAYCAACAGIPVVITSGFAMDSIIKVLEGKRVGTLFHRD 285 (717)
Q Consensus 214 ~~i~~it~~e~~~~~~~gs~~~~~tggM~~Kv~aa~~a~~~gi~v~I~~g~~~~~l~~~~tg~~iGT~i~a~ 285 (717)
++|++|+++|+.++...| .++| |.+++..|.++|||++|.|++.|+ ..||++...
T Consensus 225 ~~i~~is~~e~~ela~~G------a~vl--~~~a~~~a~~~~ipi~i~~~~~p~---------~~GT~i~~~ 279 (446)
T 3tvi_A 225 KTISKISYKELRELSYMG------ATVL--HEEAIFPVKDSGIPINIKNTNKPS---------DPGTLILSD 279 (446)
T ss_dssp CBCSEEEHHHHHHTTTC----------C--CSTTTHHHHHSSCCEEEEETTBTT---------SCCEEEECT
T ss_pred eEcceeCHHHHHHHHhCC------CCcc--hHHHHHHHHHcCCeEEEecCCCCC---------CCCEEEecC
Confidence 999999999998865543 4566 558999999999999999998874 569998866
No 96
>4gic_A HDH, histidinol dehydrogenase; protein structure initiative, STR genomics, PSI-biology, NEW YORK structural genomics researc consortium; 2.05A {Methylococcus capsulatus}
Probab=97.28 E-value=0.11 Score=55.53 Aligned_cols=284 Identities=14% Similarity=0.124 Sum_probs=151.8
Q ss_pred HHHHHHHHHHHHhcccccccccccccccCCCceEEEeecceeEEEEEcCC----CchhHHHHHHHHHHhCCE--EEEeCC
Q 005041 365 KISSLAKSIRILADMEEPIGQILKRTELADGLILEKTSCPLGVLLIVFES----RPDALVQIASLAIRSGNG--LLLKGG 438 (717)
Q Consensus 365 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~PlGVV~~I~p~----~P~~~~~~~~~ALaaGN~--vVlKps 438 (717)
-++.++++++.|.....+..... ...+|.....++.|+--|++..|- ||-..++.+.||-.||+. |+.-|.
T Consensus 93 ai~~A~~~I~~fh~~Q~~~~~~~---~~~~G~~~g~~~~Pi~~VGlYVPGG~A~ypSsvLM~aiPAkVAGV~~Iv~~tPp 169 (423)
T 4gic_A 93 ALREAAERIRAYAERQKLDSWDY---READGTLLGQKITPLDRVGLYVPGGKAAYPSSVLMNAVPAKVAGVPELIMAVPA 169 (423)
T ss_dssp HHHHHHHHHHHHHHHHCCCCEEE---ECTTSCEEEEEEEECSEEEEECCCSTTCCHHHHHHHHHHHHHHTCSEEEEECCC
T ss_pred HHHHHHHHHHHHHHhcccCCccc---ccCCCCEEEEEEEEecceeEEeeCCCCchhhHHHHhhccHHHhCCCeEEEecCC
Confidence 45566677777753222211111 112466667788999999999992 565566788899999985 444454
Q ss_pred cc---hHHHHHHHHHHHHHhcccccCcCceEEec-CCChhhhhhc----CCCCccEEEeecCHHHHHHHHhhcCCCEEEe
Q 005041 439 KE---AMRSNAILHKVITSAIPDTVGEKLIGLVT-SREEIPDLLK----LDDVIDLVIPRGSNKLVSQIKESTKIPVLGH 510 (717)
Q Consensus 439 ~~---tp~t~~~l~~~~~~al~~alP~gvv~vv~-~~~~~~~~l~----~~~~v~~v~fTGs~~~g~~i~~~a~~p~~lE 510 (717)
+. .|.+ +..+++ .|+=.+.. |+...-+.|. +=|.||+|+=-|..=|..+=.+-.+.--+=-
T Consensus 170 ~~G~i~p~i-L~AA~l----------~Gv~eIy~vGGAQAIAAlAyGTetI~~VDkIvGPGN~yVa~AKr~v~g~VgIDm 238 (423)
T 4gic_A 170 PRGELNALV-LAAAYI----------SGVDRVFRIGGAQAVAALAYGTETVPRVDKIVGPGNIYVATAKKLVFGQVGIDM 238 (423)
T ss_dssp GGGCCCHHH-HHHHHH----------HTCCEEECCCHHHHHHHHHHCCSSSCCCSEEECCCCHHHHHHHHHHBTTBEECC
T ss_pred CCCCccHHH-HHHHHh----------cCCcEEEEcCChhhhhhhccCCCcccceeEEecCCcHHHHHHHHHhcCCcCccc
Confidence 32 2322 122222 25555555 6543323332 3468999999998765422211222111111
Q ss_pred cCCcce--EEEcCCCCHHHHHHHHHhhccCCCccccccceEEEcCcccChhhHHHHHHHHHHcCceEecCccccccccCC
Q 005041 511 ADGICH--VYVDKSANLDVAKNIVIDAKIDYPAACNAMETLLVHKDLACNGALNELVVELQHEGVGLFGGPRASKLLQIP 588 (717)
Q Consensus 511 lGGk~p--~iV~~dADl~~A~~~i~~~~~~n~g~C~a~~rv~V~~~i~d~~f~~~l~~~~~~~~~~~~g~~~~~~~~pi~ 588 (717)
.-|-+= +|-|++||.+..+..++.-+=+... ..-++|..+ .+|.+++.+++++.-..+ ++.
T Consensus 239 ~AGPSEilViAD~~a~p~~vAaDLlsQAEHd~~----a~~iLvT~s---~~la~~V~~~i~~~l~~l---~r~------- 301 (423)
T 4gic_A 239 VAGPSEILVISDGRTDPDWIAMDLFSQAEHDED----AQAILISPD---AAHLEAVQASIERLLPGM---ERA------- 301 (423)
T ss_dssp CCCCCEEEEEECSCSCHHHHHHHHHHHHTTCTT----CEEEEEESC---HHHHHHHHHHHHHHGGGC---TTH-------
T ss_pred ccccceEEEEeCCCCCHHHHHHHHHHhhccCCC----CeEEEEeCc---HHHHHHHHHHHHHHHhhC---ccH-------
Confidence 123333 3335669999988888765544322 112455433 355555655555421000 110
Q ss_pred CCccccccccCceEEEEEeCCHHHHHHHHHhcCCCceeEEEecCHHHHHHHHhcCC-eeeEEEcCCCCCC-------CCC
Q 005041 589 ETRLFHHEYNSMVCTVEIVDDVRAAIDHIHQHGSAHTDCIVAEDQKVAETFLCQVD-SAAVFHNASTRFC-------DGA 660 (717)
Q Consensus 589 ~~~~~~eE~FGPVl~v~~~~~~deAi~~aN~~~~GL~a~I~t~d~~~a~~~~~~l~-~G~v~iN~~~~~~-------~~~ 660 (717)
++.. +-+.---.++.++|++||++++|... +=..-|.++|.. .+..+++ +|.|++-..++.. ++.
T Consensus 302 --~i~~-~sl~~~g~ii~v~~~~ea~~~~N~~A-PEHLel~~~~~~---~~l~~i~nAGaIFlG~~tp~~~GDY~aG~NH 374 (423)
T 4gic_A 302 --EVIR-TSLERRGGMILVDDLEQAAAVANRIA-PEHLELSVESPE---VLVESIRNAGAIFMGRYTAEALGDYCAGPNH 374 (423)
T ss_dssp --HHHH-HHHHHHCEEEECSSHHHHHHHHHHHC-CSEEEEESSCHH---HHGGGCCCCSEEEEC----------------
T ss_pred --HHHH-HHHhcCceEEEEeehHHHHHHHHhhC-hHHhhhhhCCHH---HHHhhCcEeceeecCCCCchhhhhcCcCCCc
Confidence 1111 11111124567899999999999975 345678899974 5666665 9999998655321 111
Q ss_pred ccCCccccccccCcccccccchhhcccEEEEEE
Q 005041 661 RFGLGAEVGISTSRIHARGPVGVEGLLTTRWIL 693 (717)
Q Consensus 661 pfG~g~~~G~~~~~~~~~g~~g~~~ft~~k~v~ 693 (717)
-++- +|.. +..+.-++..|...-++.
T Consensus 375 vLPT---~G~A----r~~sgLsv~~F~K~~s~~ 400 (423)
T 4gic_A 375 VLPT---SGTA----RFSSPLGVYDFQKRSSLI 400 (423)
T ss_dssp CCCC---TTGG----GTCCCCCGGGGEEEEEEE
T ss_pred cCCC---CCcc----cccCCCCHHHeeeeeeEE
Confidence 1111 2222 223556788887765543
No 97
>1kae_A HDH, histidinol dehydrogenase; L-histidinol dehydrogenase, homodimer, rossman fold, 4 domai L-histidine biosynthesis, NAD cofactor; HET: HSO NAD; 1.70A {Escherichia coli} SCOP: c.82.1.2 PDB: 1k75_A* 1kah_A* 1kar_A
Probab=96.48 E-value=0.8 Score=49.04 Aligned_cols=284 Identities=11% Similarity=0.107 Sum_probs=155.7
Q ss_pred HHHHHHHHHHHHhcccccccccccccccCCCceEEEeecceeEEEEEcCC----CchhHHHHHHHHHHhCCE--EEEeCC
Q 005041 365 KISSLAKSIRILADMEEPIGQILKRTELADGLILEKTSCPLGVLLIVFES----RPDALVQIASLAIRSGNG--LLLKGG 438 (717)
Q Consensus 365 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~PlGVV~~I~p~----~P~~~~~~~~~ALaaGN~--vVlKps 438 (717)
-++.+.++++.|-....+..... . ...|.....++.|+--|++..|. ||-..++.+.||-.||+. |+.-|.
T Consensus 87 ai~~A~~nI~~fH~~Q~~~~~~~--~-~~~Gv~~gq~~~Pi~rvGlYVPGG~a~ypSsvLM~aiPAkVAGV~~Iv~~tPp 163 (434)
T 1kae_A 87 AMAVAVKNIETFHTAQKLPPVDV--E-TQPGVRCQQVTRPVASVGLYIPGGSAPLFSTVLMLATPASIAGCKKVVLCSPP 163 (434)
T ss_dssp HHHHHHHHHHHHHHTTCCCCEEE--E-EETTEEEEEEEEECSEEEEECCCSSSCCTHHHHHHHHHHHHHTCSEEEEEECS
T ss_pred HHHHHHHHHHHHHHHhcCCCceE--E-ecCCcEEEEEEeehheEEEEecCCCCCchhHHHHhhccHhhcCCCeEEEECCC
Confidence 45566677777753322211011 1 12366667788999999999993 565566778899999985 444454
Q ss_pred cchHHHHHHHHHHHHHhcccccCcCceEEec-CCChhhhhhc----CCCCccEEEeecCHHH--HHHHHhh-cCCCEEEe
Q 005041 439 KEAMRSNAILHKVITSAIPDTVGEKLIGLVT-SREEIPDLLK----LDDVIDLVIPRGSNKL--VSQIKES-TKIPVLGH 510 (717)
Q Consensus 439 ~~tp~t~~~l~~~~~~al~~alP~gvv~vv~-~~~~~~~~l~----~~~~v~~v~fTGs~~~--g~~i~~~-a~~p~~lE 510 (717)
.-.|.+ +..+++ .|+=.+.. |+...-+.|. +=|.||+|+=-|..=| +|..... .+.--+=-
T Consensus 164 ~i~p~i-L~AA~l----------~Gv~eIy~vGGAQAIAAlAyGTetIp~VDkI~GPGN~yVa~AKr~Vs~~~G~VgIDm 232 (434)
T 1kae_A 164 PIADEI-LYAAQL----------CGVQDVFNVGGAQAIAALAFGTESVPKVDKIFGPGNAFVTEAKRQVSQRLDGAAIDM 232 (434)
T ss_dssp SCCHHH-HHHHHH----------TTCCEEEECCHHHHHHHHHHCCSSSCCCSEEECCCCHHHHHHHHHHHHCTTSCEESC
T ss_pred CCCHHH-HHHHHH----------cCCCEEeecccHHHHHHHHcCCCCCCCccEEECCCcHHHHHHHHHhHhhcCccccCC
Confidence 334432 111222 24445554 5543322332 3478999999998644 4444311 22111101
Q ss_pred cCCcce--EEEcCCCCHHHHHHHHHhhccCCCccccccceEEEcCcccChhhHHHHHHHHHHcCceEecCccccccccCC
Q 005041 511 ADGICH--VYVDKSANLDVAKNIVIDAKIDYPAACNAMETLLVHKDLACNGALNELVVELQHEGVGLFGGPRASKLLQIP 588 (717)
Q Consensus 511 lGGk~p--~iV~~dADl~~A~~~i~~~~~~n~g~C~a~~rv~V~~~i~d~~f~~~l~~~~~~~~~~~~g~~~~~~~~pi~ 588 (717)
.-|-+= +|-|++||.+..+..++.-+=+... ..-++|-.| ++|.+++.+++++.-..+ ++.
T Consensus 233 ~AGPSEilViAD~tAnp~~vAaDLLsQAEHd~~----a~aiLvT~s---~~la~~V~~ev~~ql~~l---pr~------- 295 (434)
T 1kae_A 233 PAGPSEVLVIADSGATPDFVASDLLSQAEHGPD----SQVILLTPA---ADMARRVAEAVERQLAEL---PRA------- 295 (434)
T ss_dssp CCCCCEEEEEECTTSCHHHHHHHHHHHHTTCTT----CEEEEEESC---HHHHHHHHHHHHHHHTTC---TTH-------
T ss_pred CCCCceEEEEeCCCCCHHHHHHHHHHHhccCCC----CcEEEEECC---HHHHHHHHHHHHHHHHhC---ChH-------
Confidence 123332 3446679999988888765544321 112344332 244444544444320000 111
Q ss_pred CCccccccccCceEEEEEeCCHHHHHHHHHhcCCCceeEEEecCHHHHHHHHhc-CCeeeEEEcCCCCC-------CCCC
Q 005041 589 ETRLFHHEYNSMVCTVEIVDDVRAAIDHIHQHGSAHTDCIVAEDQKVAETFLCQ-VDSAAVFHNASTRF-------CDGA 660 (717)
Q Consensus 589 ~~~~~~eE~FGPVl~v~~~~~~deAi~~aN~~~~GL~a~I~t~d~~~a~~~~~~-l~~G~v~iN~~~~~-------~~~~ 660 (717)
++. ++-+..- .|+-++|+|||++++|...- =-.-|.++|.. .+..+ -.+|.|++...++- .++.
T Consensus 296 --~ia-~~sl~~~-~ii~v~~l~ea~~~~N~~AP-EHLel~~~dp~---~~l~~I~nAGaIFlG~~tpe~~GDY~aG~NH 367 (434)
T 1kae_A 296 --ETA-RQALNAS-RLIVTKDLAQCVEISNQYGP-EHLIIQTRNAR---ELVDSITSAGSVFLGDWSPESAGDYASGTNH 367 (434)
T ss_dssp --HHH-HHHHTTC-EEEECSSHHHHHHHHHHHCC-SEEEEESTTHH---HHGGGCCSCSEEEESTTCCHHHHHHTSSSCC
T ss_pred --HHH-HHHHHcC-eEEEECCHHHHHHHHHHhhh-HhhhhhhcCHH---HHHhhcCcccchhcCCCCchhhcccccCCCc
Confidence 111 2233444 68889999999999999763 35778899975 44444 56899999976541 1222
Q ss_pred ccCCccccccccCcccccccchhhcccEEEEEEe
Q 005041 661 RFGLGAEVGISTSRIHARGPVGVEGLLTTRWILR 694 (717)
Q Consensus 661 pfG~g~~~G~~~~~~~~~g~~g~~~ft~~k~v~~ 694 (717)
-++- +|.. +..|.-++..|...-++..
T Consensus 368 vLPT---~G~A----R~~sgLsV~~F~K~~s~~~ 394 (434)
T 1kae_A 368 VLPT---YGYT----ATCSSLGLADFQKRMTVQE 394 (434)
T ss_dssp CCCC---TTGG----GTCCCSCGGGGEEEEEEEE
T ss_pred ccCC---CCce----eccCCCcHHhccceeeEEE
Confidence 1222 1222 2235678888887765543
No 98
>2b30_A Pvivax hypothetical protein; SGPP, structural genomics, PSI, protein structure initiative; 2.70A {Plasmodium vivax} SCOP: c.108.1.10
Probab=56.19 E-value=12 Score=38.07 Aligned_cols=56 Identities=13% Similarity=0.286 Sum_probs=39.8
Q ss_pred hhHhHHhhcc--CCeEEEEeCCcccccCCCcccHHHHHHHHHHHHHHHHCCCeEEEEecChh
Q 005041 6 QDHTRDFLKN--VKRVVVKVGTAVVTRSDGRLALGRLGALLEQLKELNSQGFEIILVSSGAV 65 (717)
Q Consensus 6 ~~~~~~~~~~--~~~iVvKiGGs~l~~~~~~~~~~~l~~l~~~Ia~l~~~G~~vviVhGGg~ 65 (717)
++++|+.|.+ .+.++.=+.|+.+.+.++.++ ....+.|..+++.|++++++.|=..
T Consensus 15 ~~~~~~~~~~M~ikli~~DlDGTLl~~~~~~is----~~~~~al~~l~~~Gi~v~iaTGR~~ 72 (301)
T 2b30_A 15 DLKVEEALKGADIKLLLIDFDGTLFVDKDIKVP----SENIDAIKEAIEKGYMVSICTGRSK 72 (301)
T ss_dssp --CHHHHTTTCCCCEEEEETBTTTBCCTTTCSC----HHHHHHHHHHHHHTCEEEEECSSCH
T ss_pred CeehhhccccccccEEEEECCCCCcCCCCCccC----HHHHHHHHHHHHCCCEEEEEcCCCH
Confidence 4567887764 478999999999987233455 3456778888888999888876543
No 99
>2fiu_A Conserved hypothetical protein; alpha-beta, dimeric alpha-beta barrels, structural genomics, protein structure initiative; 2.00A {Agrobacterium tumefaciens str} SCOP: d.58.4.16
Probab=44.35 E-value=42 Score=28.13 Aligned_cols=69 Identities=14% Similarity=0.105 Sum_probs=40.7
Q ss_pred ccccceEEEcCcccC----hhhHHHHHHHHHHcCceEe--cCccccccccCCCCccccccccCceEEEEEeCCHHHHHHH
Q 005041 543 CNAMETLLVHKDLAC----NGALNELVVELQHEGVGLF--GGPRASKLLQIPETRLFHHEYNSMVCTVEIVDDVRAAIDH 616 (717)
Q Consensus 543 C~a~~rv~V~~~i~d----~~f~~~l~~~~~~~~~~~~--g~~~~~~~~pi~~~~~~~eE~FGPVl~v~~~~~~deAi~~ 616 (717)
|+..-+++++-++.| +++.+.....+++.|.+++ |+... +...+ -.|-+.|+.|+|.+.|.++
T Consensus 2 ~M~~~Y~I~~~~v~d~e~y~~Y~~~~~~~~~~~gGr~l~~g~~~~----------~~eG~-~~~~~viieFpS~~aa~~~ 70 (99)
T 2fiu_A 2 HMAKGYWIAQVDVRDSERYKDYVSTAKPAFERFGANFLARGGSVT----------ELEGT-ARARNVVIEFPSVQHAIDC 70 (99)
T ss_dssp -CCCEEEEEEEEESCHHHHHHHHHHHHHHHHHTTCEEEEESCCEE----------EEESC-CCSEEEEEEESSHHHHHHH
T ss_pred CCCcEEEEEEEEeCCHHHHHHHHHHHHHHHHHcCcEEEEECCCce----------EEecC-CcCeEEEEECCCHHHHHHH
Confidence 455456666655553 3455555555666665543 22110 11112 2348889999999999999
Q ss_pred HHhcCC
Q 005041 617 IHQHGS 622 (717)
Q Consensus 617 aN~~~~ 622 (717)
.|+-+|
T Consensus 71 ~~s~~Y 76 (99)
T 2fiu_A 71 YNSPEY 76 (99)
T ss_dssp HHSHHH
T ss_pred HcCHHH
Confidence 998766
No 100
>3fgh_A Transcription factor A, mitochondrial; HMG domain, mitochondrial transcription, activator, DNA- binding, mitochondrion, phosphoprotein; 1.35A {Homo sapiens}
Probab=32.42 E-value=84 Score=23.77 Aligned_cols=36 Identities=3% Similarity=0.068 Sum_probs=26.9
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHCHHHH
Q 005041 300 VAARESSRRLQALQSQDRRKILLDVADALEANESLI 335 (717)
Q Consensus 300 ~~A~~A~~~w~~~~~~~R~~~L~~~a~~l~~~~~el 335 (717)
+.++.....|+.+|.++|..+.......-++...++
T Consensus 28 ei~k~lg~~Wk~ls~~eK~~y~~~A~~~k~~Y~~e~ 63 (67)
T 3fgh_A 28 EKLKTVKENWKNLSDSEKELYIQHAKEDETRYHNEM 63 (67)
T ss_dssp HHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 345677778999999999999887766655555444
No 101
>2p9j_A Hypothetical protein AQ2171; secsg, riken, PSI, structural GENO protein structure initiative, southeast collaboratory for S genomics; 2.40A {Aquifex aeolicus}
Probab=32.19 E-value=22 Score=31.89 Aligned_cols=64 Identities=17% Similarity=0.099 Sum_probs=41.6
Q ss_pred hHHhhccCCeEEEEeCCcccccCC-----CcccHHHHHHHHHHHHHHHHCCCeEEEEecChhHhhHHHH
Q 005041 9 TRDFLKNVKRVVVKVGTAVVTRSD-----GRLALGRLGALLEQLKELNSQGFEIILVSSGAVGVGRQRL 72 (717)
Q Consensus 9 ~~~~~~~~~~iVvKiGGs~l~~~~-----~~~~~~~l~~l~~~Ia~l~~~G~~vviVhGGg~~~~~~~l 72 (717)
.++++++.+.++.=+.|..+.+.. ............+.|..|++.|++++|+.|+....-+..+
T Consensus 2 l~~~~~~~k~v~~DlDGTL~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~g~~~~i~T~~~~~~~~~~l 70 (162)
T 2p9j_A 2 LRDRVKKLKLLIMDIDGVLTDGKLYYTEHGETIKVFNVLDGIGIKLLQKMGITLAVISGRDSAPLITRL 70 (162)
T ss_dssp HHHHHHHCCEEEECCTTTTSCSEEEEETTEEEEEEEEHHHHHHHHHHHTTTCEEEEEESCCCHHHHHHH
T ss_pred ccccccceeEEEEecCcceECCceeecCCCceeeeecccHHHHHHHHHHCCCEEEEEeCCCcHHHHHHH
Confidence 467788889999999999986431 0000000122356778888899999999988554444333
No 102
>3r4c_A Hydrolase, haloacid dehalogenase-like hydrolase; haloalkanoate dehalogenase enzyme superfamily, phosphohydrol hydrolase; 1.82A {Bacteroides thetaiotaomicron} SCOP: c.108.1.0
Probab=31.84 E-value=52 Score=32.07 Aligned_cols=47 Identities=13% Similarity=0.362 Sum_probs=34.9
Q ss_pred hccCCeEEEEeCCcccccCCCcccHHHHHHHHHHHHHHHHCCCeEEEEecC
Q 005041 13 LKNVKRVVVKVGTAVVTRSDGRLALGRLGALLEQLKELNSQGFEIILVSSG 63 (717)
Q Consensus 13 ~~~~~~iVvKiGGs~l~~~~~~~~~~~l~~l~~~Ia~l~~~G~~vviVhGG 63 (717)
++|.|.++.=+.|..+.+....+. ......|..++++|++++++.|=
T Consensus 9 ~~miKli~~DlDGTLl~~~~~~i~----~~~~~al~~l~~~G~~~~iaTGR 55 (268)
T 3r4c_A 9 SHMIKVLLLDVDGTLLSFETHKVS----QSSIDALKKVHDSGIKIVIATGR 55 (268)
T ss_dssp CSCCCEEEECSBTTTBCTTTCSCC----HHHHHHHHHHHHTTCEEEEECSS
T ss_pred CCceEEEEEeCCCCCcCCCCCcCC----HHHHHHHHHHHHCCCEEEEEcCC
Confidence 345688999999999984333454 45567788888999998887643
No 103
>3fzq_A Putative hydrolase; YP_001086940.1, putative haloacid dehalogenase-like hydrolas structural genomics, joint center for structural genomics; HET: MSE; 2.10A {Clostridium difficile} SCOP: c.108.1.0
Probab=28.90 E-value=60 Score=31.56 Aligned_cols=48 Identities=4% Similarity=0.153 Sum_probs=35.1
Q ss_pred hccCCeEEEEeCCcccccCCCcccHHHHHHHHHHHHHHHHCCCeEEEEecChh
Q 005041 13 LKNVKRVVVKVGTAVVTRSDGRLALGRLGALLEQLKELNSQGFEIILVSSGAV 65 (717)
Q Consensus 13 ~~~~~~iVvKiGGs~l~~~~~~~~~~~l~~l~~~Ia~l~~~G~~vviVhGGg~ 65 (717)
|+|.+.++.=+.|..+.+.. .+. ....+.|..+++.|++++++.|=..
T Consensus 2 M~M~kli~fDlDGTLl~~~~-~i~----~~~~~al~~l~~~G~~~~iaTGR~~ 49 (274)
T 3fzq_A 2 MKLYKLLILDIDGTLRDEVY-GIP----ESAKHAIRLCQKNHCSVVICTGRSM 49 (274)
T ss_dssp --CCCEEEECSBTTTBBTTT-BCC----HHHHHHHHHHHHTTCEEEEECSSCT
T ss_pred CCcceEEEEECCCCCCCCCC-cCC----HHHHHHHHHHHHCCCEEEEEeCCCh
Confidence 45678899999999998754 444 4456777788899999888876533
No 104
>3pdw_A Uncharacterized hydrolase YUTF; structural genomics, PSI2, NYSGXRC, protein structure initia YORK SGX research center for structural genomics; 1.60A {Bacillus subtilis} SCOP: c.108.1.0
Probab=27.87 E-value=52 Score=32.07 Aligned_cols=44 Identities=14% Similarity=0.345 Sum_probs=35.4
Q ss_pred ccCCeEEEEeCCcccccCCCcccHHHHHHHHHHHHHHHHCCCeEEEEecC
Q 005041 14 KNVKRVVVKVGTAVVTRSDGRLALGRLGALLEQLKELNSQGFEIILVSSG 63 (717)
Q Consensus 14 ~~~~~iVvKiGGs~l~~~~~~~~~~~l~~l~~~Ia~l~~~G~~vviVhGG 63 (717)
++.+.+++=+.|..+.++. ......+.|..++++|++++++.|.
T Consensus 4 ~~~kli~~DlDGTLl~~~~------~~~~~~~ai~~l~~~Gi~v~laTgr 47 (266)
T 3pdw_A 4 KTYKGYLIDLDGTMYNGTE------KIEEACEFVRTLKDRGVPYLFVTNN 47 (266)
T ss_dssp CCCSEEEEECSSSTTCHHH------HHHHHHHHHHHHHHTTCCEEEEESC
T ss_pred ccCCEEEEeCcCceEeCCE------eCccHHHHHHHHHHCCCeEEEEeCC
Confidence 3468899999999987632 2456778899999999999999874
No 105
>3v42_A Folliculin; tumor suppressor, protein binding; 2.00A {Homo sapiens}
Probab=27.63 E-value=73 Score=31.04 Aligned_cols=70 Identities=6% Similarity=0.093 Sum_probs=46.8
Q ss_pred HHHHHHHHHhCCEEEEeCCcchHHHHHHHHHHHHHhcccccCcCceEEecCCChhhhhhcCCCCccEEEeecCHHHHHHH
Q 005041 420 VQIASLAIRSGNGLLLKGGKEAMRSNAILHKVITSAIPDTVGEKLIGLVTSREEIPDLLKLDDVIDLVIPRGSNKLVSQI 499 (717)
Q Consensus 420 ~~~~~~ALaaGN~vVlKps~~tp~t~~~l~~~~~~al~~alP~gvv~vv~~~~~~~~~l~~~~~v~~v~fTGs~~~g~~i 499 (717)
+..++..+..||=||+|.+...-. ..+..++.. -||.|++++++..++- ...-.-+.+.++.+..+-..+
T Consensus 21 F~~l~~~vl~GnQiIVrg~~~~~~--~s~~~~L~~----lLP~~c~~l~~~s~~Y----~~~~~cnilgls~~v~iP~~v 90 (226)
T 3v42_A 21 FRMLAWHVLMGNQVIWKSRDVDLV--QSAFEVLRT----MLPVGCVRIIPYSSQY----EEAYRCNFLGLSPHVQIPPHV 90 (226)
T ss_dssp HHHHHHHHHHTCEEEEECSCHHHH--HHHHHHHGG----GSCGGGCCEEEEESSC----CCTTTCSEEEECTTCCCCHHH
T ss_pred HHHHHHHHhcCCEEEEEcCCHHHH--HHHHHHHHH----hCCHHHHhccccchhh----cchhheeeecCCCCcccCccc
Confidence 456788899999999999874332 334555542 3999999999732221 112346778888877666665
No 106
>1rkq_A Hypothetical protein YIDA; two domain structure with beta-alpha sandwich. stucture contains A magnesium ION., PSI, protein structure initiative; 1.40A {Escherichia coli} SCOP: c.108.1.10
Probab=27.50 E-value=69 Score=31.73 Aligned_cols=46 Identities=9% Similarity=0.286 Sum_probs=34.9
Q ss_pred cCCeEEEEeCCcccccCCCcccHHHHHHHHHHHHHHHHCCCeEEEEecChh
Q 005041 15 NVKRVVVKVGTAVVTRSDGRLALGRLGALLEQLKELNSQGFEIILVSSGAV 65 (717)
Q Consensus 15 ~~~~iVvKiGGs~l~~~~~~~~~~~l~~l~~~Ia~l~~~G~~vviVhGGg~ 65 (717)
|.+.++.=+.|..+.+. +.++ ....+.|..++++|++++++.|=..
T Consensus 4 m~kli~~DlDGTLl~~~-~~i~----~~~~~aL~~l~~~Gi~vviaTGR~~ 49 (282)
T 1rkq_A 4 AIKLIAIDMDGTLLLPD-HTIS----PAVKNAIAAARARGVNVVLTTGRPY 49 (282)
T ss_dssp CCCEEEECCCCCCSCTT-SCCC----HHHHHHHHHHHHTTCEEEEECSSCG
T ss_pred cceEEEEeCCCCCCCCC-CcCC----HHHHHHHHHHHHCCCEEEEEcCCCH
Confidence 35789999999999865 3455 3456778888899999888886543
No 107
>3qgm_A P-nitrophenyl phosphatase (PHO2); structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: MSE; 2.00A {Archaeoglobus fulgidus} SCOP: c.108.1.0
Probab=26.58 E-value=50 Score=32.17 Aligned_cols=44 Identities=20% Similarity=0.293 Sum_probs=35.2
Q ss_pred ccCCeEEEEeCCcccccCCCcccHHHHHHHHHHHHHHHHCCCeEEEEecC
Q 005041 14 KNVKRVVVKVGTAVVTRSDGRLALGRLGALLEQLKELNSQGFEIILVSSG 63 (717)
Q Consensus 14 ~~~~~iVvKiGGs~l~~~~~~~~~~~l~~l~~~Ia~l~~~G~~vviVhGG 63 (717)
++.+.+++=+.|..+.+.. + +....+.|+.++++|++++++.|.
T Consensus 6 ~~~kli~~DlDGTLl~~~~--~----~~~~~~ai~~l~~~Gi~v~l~Tgr 49 (268)
T 3qgm_A 6 PDKKGYIIDIDGVIGKSVT--P----IPEGVEGVKKLKELGKKIIFVSNN 49 (268)
T ss_dssp CCCSEEEEECBTTTEETTE--E----CHHHHHHHHHHHHTTCEEEEEECC
T ss_pred ccCCEEEEcCcCcEECCCE--e----CcCHHHHHHHHHHcCCeEEEEeCc
Confidence 3468899999999998653 2 234678889999999999999985
No 108
>2eqz_A High mobility group protein B3; HMG-box domain, mobility group protein 2A, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=25.29 E-value=1.2e+02 Score=24.25 Aligned_cols=37 Identities=11% Similarity=0.116 Sum_probs=27.5
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHCHHHHH
Q 005041 300 VAARESSRRLQALQSQDRRKILLDVADALEANESLIK 336 (717)
Q Consensus 300 ~~A~~A~~~w~~~~~~~R~~~L~~~a~~l~~~~~el~ 336 (717)
+.++..-..|+.++.++|..+.......-+++..++.
T Consensus 47 eisk~lg~~Wk~ls~~eK~~y~~~A~~~k~~y~~e~~ 83 (86)
T 2eqz_A 47 EFSKKCSERWKTMSGKEKSKFDEMAKADKVRYDREMK 83 (86)
T ss_dssp HHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456667789999999999998877766666555543
No 109
>2obb_A Hypothetical protein; structural genomics, PSI-2, PR structure initiative, midwest center for structural genomic unknown function; 2.20A {Bacteroides thetaiotaomicron} SCOP: c.108.1.25
Probab=25.17 E-value=33 Score=30.92 Aligned_cols=47 Identities=21% Similarity=0.250 Sum_probs=33.2
Q ss_pred CCeEEEEeCCcccccCCCcccHHHHHHHHHHHHHHHHCCCeEEEEecC
Q 005041 16 VKRVVVKVGTAVVTRSDGRLALGRLGALLEQLKELNSQGFEIILVSSG 63 (717)
Q Consensus 16 ~~~iVvKiGGs~l~~~~~~~~~~~l~~l~~~Ia~l~~~G~~vviVhGG 63 (717)
++.+++=+.|.++.+....+.. ......+.|..++++|++++|+.|=
T Consensus 3 ~k~i~~DlDGTL~~~~~~~i~~-~~~~~~~al~~l~~~G~~iii~TgR 49 (142)
T 2obb_A 3 AMTIAVDFDGTIVEHRYPRIGE-EIPFAVETLKLLQQEKHRLILWSVR 49 (142)
T ss_dssp CCEEEECCBTTTBCSCTTSCCC-BCTTHHHHHHHHHHTTCEEEECCSC
T ss_pred CeEEEEECcCCCCCCCCccccc-cCHHHHHHHHHHHHCCCEEEEEeCC
Confidence 5788999999999864211110 0135678888899999998888864
No 110
>1to0_A Hypothetical UPF0247 protein YYDA; structural genomics, unknown function, PSI, protein structure initiative; 2.50A {Bacillus subtilis} SCOP: c.116.1.3
Probab=24.38 E-value=98 Score=28.64 Aligned_cols=46 Identities=15% Similarity=0.373 Sum_probs=36.7
Q ss_pred eEEEEeCCcccccCCCcccHHHHHHHHHHHHHHHHCC-CeEEEEecChhHhhHHHHh
Q 005041 18 RVVVKVGTAVVTRSDGRLALGRLGALLEQLKELNSQG-FEIILVSSGAVGVGRQRLR 73 (717)
Q Consensus 18 ~iVvKiGGs~l~~~~~~~~~~~l~~l~~~Ia~l~~~G-~~vviVhGGg~~~~~~~l~ 73 (717)
.+++-..|..+++ ..|++.|..+...| -+++.|.||.-+++..+.+
T Consensus 73 vI~LD~~Gk~~sS----------~~fA~~l~~~~~~G~~~i~FvIGGa~Gl~~~v~~ 119 (167)
T 1to0_A 73 VIALAIEGKMKTS----------EELADTIDKLATYGKSKVTFVIGGSLGLSDTVMK 119 (167)
T ss_dssp EEEEEEEEEECCH----------HHHHHHHHHHHTTTCCEEEEEECCSSCCCHHHHH
T ss_pred EEEEcCCCCcCCH----------HHHHHHHHHHHhcCCceEEEEEECCCCCCHHHHH
Confidence 5667788888886 57889999988888 5799999998888876543
No 111
>3hyn_A Putative signal transduction protein; DUF1863 family protein, nucleotide-binding protein, structur genomics; HET: MSE; 1.20A {Eubacterium rectale atcc 33656}
Probab=23.81 E-value=87 Score=29.46 Aligned_cols=50 Identities=16% Similarity=0.298 Sum_probs=38.5
Q ss_pred hhhhHhHHhhccCCeEEEEeCCcccccCCCcccHHHHHHHHHHHHHHH-HCCCeEEEEecC
Q 005041 4 SFQDHTRDFLKNVKRVVVKVGTAVVTRSDGRLALGRLGALLEQLKELN-SQGFEIILVSSG 63 (717)
Q Consensus 4 ~~~~~~~~~~~~~~~iVvKiGGs~l~~~~~~~~~~~l~~l~~~Ia~l~-~~G~~vviVhGG 63 (717)
++....||+|+..+.+|+=+|-..-.+. .+.-+|.... ++|.++|+|+=+
T Consensus 68 tIKrrLReRI~~Sk~vIllIs~~T~~s~----------~v~wEIe~Ai~~~~~PII~Vy~~ 118 (189)
T 3hyn_A 68 TLKPRLHTRLDNSKNIILFLSSITANSR----------ALREEMNYGIGTKGLPVIVIYPD 118 (189)
T ss_dssp THHHHHHHHHHTEEEEEEECCTTCCCCH----------HHHHHHHHHTTTTCCCEEEEETT
T ss_pred HHHHHHHHHHHhcCcEEEEEecCccccc----------hhHHHHHHHHHhcCCcEEEEECC
Confidence 4556689999999988888887776652 3444888888 889999999954
No 112
>1l6r_A Hypothetical protein TA0175; structural genomics, putative hydrolas midwest center for structural genomics, MCSG, PSI; 1.40A {Thermoplasma acidophilum} SCOP: c.108.1.10 PDB: 1kyt_A
Probab=23.18 E-value=66 Score=30.88 Aligned_cols=46 Identities=13% Similarity=0.347 Sum_probs=35.0
Q ss_pred cCCeEEEEeCCcccccCCCcccHHHHHHHHHHHHHHHHCCCeEEEEecChh
Q 005041 15 NVKRVVVKVGTAVVTRSDGRLALGRLGALLEQLKELNSQGFEIILVSSGAV 65 (717)
Q Consensus 15 ~~~~iVvKiGGs~l~~~~~~~~~~~l~~l~~~Ia~l~~~G~~vviVhGGg~ 65 (717)
|.+.++.=+.|..+.+. +.++ ....+.|..|++.|++++++.|-..
T Consensus 4 m~kli~~DlDGTLl~~~-~~i~----~~~~~~l~~l~~~g~~~~i~TGr~~ 49 (227)
T 1l6r_A 4 MIRLAAIDVDGNLTDRD-RLIS----TKAIESIRSAEKKGLTVSLLSGNVI 49 (227)
T ss_dssp CCCEEEEEHHHHSBCTT-SCBC----HHHHHHHHHHHHTTCEEEEECSSCH
T ss_pred ceEEEEEECCCCCcCCC-CcCC----HHHHHHHHHHHHCCCEEEEECCCCc
Confidence 45789999999999864 3455 3456778888899999988887644
No 113
>1wr8_A Phosphoglycolate phosphatase; alpha / beta core domain, HAD superfamily, structural genomi structural genomics/proteomics initiative, RSGI; 1.60A {Pyrococcus horikoshii} SCOP: c.108.1.10
Probab=22.31 E-value=1.2e+02 Score=28.90 Aligned_cols=46 Identities=20% Similarity=0.397 Sum_probs=34.4
Q ss_pred cCCeEEEEeCCcccccCCCcccHHHHHHHHHHHHHHHHCCCeEEEEecChh
Q 005041 15 NVKRVVVKVGTAVVTRSDGRLALGRLGALLEQLKELNSQGFEIILVSSGAV 65 (717)
Q Consensus 15 ~~~~iVvKiGGs~l~~~~~~~~~~~l~~l~~~Ia~l~~~G~~vviVhGGg~ 65 (717)
|.+.++.=+.|..+.+.. .+. ......|..++++|++++++.|-..
T Consensus 2 m~kli~~DlDGTLl~~~~-~i~----~~~~~al~~l~~~G~~v~i~TGR~~ 47 (231)
T 1wr8_A 2 KIKAISIDIDGTITYPNR-MIH----EKALEAIRRAESLGIPIMLVTGNTV 47 (231)
T ss_dssp CCCEEEEESTTTTBCTTS-CBC----HHHHHHHHHHHHTTCCEEEECSSCH
T ss_pred ceeEEEEECCCCCCCCCC-cCC----HHHHHHHHHHHHCCCEEEEEcCCCh
Confidence 357899999999998643 454 3456677788889999988886643
No 114
>1k1e_A Deoxy-D-mannose-octulosonate 8-phosphate phosphat; structural genomics, KDO 8-P phosphatase, structure function project, S2F; HET: MES; 1.67A {Haemophilus influenzae RD} SCOP: c.108.1.5 PDB: 1j8d_A*
Probab=22.23 E-value=54 Score=30.08 Aligned_cols=59 Identities=19% Similarity=0.200 Sum_probs=39.5
Q ss_pred HHhhccCCeEEEEeCCcccccCC-----C----cccHHHHHHHHHHHHHHHHCCCeEEEEecChhHhhHHHH
Q 005041 10 RDFLKNVKRVVVKVGTAVVTRSD-----G----RLALGRLGALLEQLKELNSQGFEIILVSSGAVGVGRQRL 72 (717)
Q Consensus 10 ~~~~~~~~~iVvKiGGs~l~~~~-----~----~~~~~~l~~l~~~Ia~l~~~G~~vviVhGGg~~~~~~~l 72 (717)
++.+++.+.++.=+.|..+.+.. + .+. ......|..|++.|++++|+.|.....-+..+
T Consensus 2 ~~~~~~ik~i~~DlDGTL~~~~~~~~~~~~~~~~~~----~~~~~~l~~L~~~G~~~~i~Tg~~~~~~~~~~ 69 (180)
T 1k1e_A 2 QQKLENIKFVITDVDGVLTDGQLHYDANGEAIKSFH----VRDGLGIKMLMDADIQVAVLSGRDSPILRRRI 69 (180)
T ss_dssp --CGGGCCEEEEECTTTTSCSEEEEETTEEEEEEEE----HHHHHHHHHHHHTTCEEEEEESCCCHHHHHHH
T ss_pred cchhhCCeEEEEeCCCCcCCCCeeeccCcceeeeec----cchHHHHHHHHHCCCeEEEEeCCCcHHHHHHH
Confidence 34567778999999999987531 1 122 12346788888999999999988554444433
No 115
>3f9r_A Phosphomannomutase; trypanosome glycobiology structural genomics, isomerase, structural genomics consortium, SGC; 1.85A {Trypanosoma brucei} SCOP: c.108.1.0 PDB: 2i54_A* 2i55_A*
Probab=22.20 E-value=83 Score=30.68 Aligned_cols=45 Identities=11% Similarity=0.091 Sum_probs=34.4
Q ss_pred CCeEEEEeCCcccccCCCcccHHHHHHHHHHHHHHHHCCCeEEEEecChh
Q 005041 16 VKRVVVKVGTAVVTRSDGRLALGRLGALLEQLKELNSQGFEIILVSSGAV 65 (717)
Q Consensus 16 ~~~iVvKiGGs~l~~~~~~~~~~~l~~l~~~Ia~l~~~G~~vviVhGGg~ 65 (717)
.+.++.=+.|..+.+.. .++ ....+.|..++++|++++|+.|-..
T Consensus 4 ~kli~~DlDGTLl~~~~-~i~----~~~~~~l~~l~~~g~~~~iaTGR~~ 48 (246)
T 3f9r_A 4 RVLLLFDVDGTLTPPRL-CQT----DEMRALIKRARGAGFCVGTVGGSDF 48 (246)
T ss_dssp SEEEEECSBTTTBSTTS-CCC----HHHHHHHHHHHHTTCEEEEECSSCH
T ss_pred ceEEEEeCcCCcCCCCC-ccC----HHHHHHHHHHHHCCCEEEEECCCCH
Confidence 56788889999998653 455 3566778889999999888886644
No 116
>1ns5_A Hypothetical protein YBEA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 1.68A {Escherichia coli} SCOP: c.116.1.3
Probab=21.70 E-value=93 Score=28.41 Aligned_cols=51 Identities=14% Similarity=0.162 Sum_probs=38.2
Q ss_pred hccCCeEEEEeCCcccccCCCcccHHHHHHHHHHHHHHHHCCCeEEEEecChhHhhHHHHh
Q 005041 13 LKNVKRVVVKVGTAVVTRSDGRLALGRLGALLEQLKELNSQGFEIILVSSGAVGVGRQRLR 73 (717)
Q Consensus 13 ~~~~~~iVvKiGGs~l~~~~~~~~~~~l~~l~~~Ia~l~~~G~~vviVhGGg~~~~~~~l~ 73 (717)
+.....+++-..|..+++ ..|++.|..+...|.+++.|.||.-+++..+.+
T Consensus 64 i~~~~vi~Ld~~Gk~~sS----------~~fA~~l~~~~~~g~~i~FvIGG~~Gl~~~v~~ 114 (155)
T 1ns5_A 64 AGKNRIVTLDIPGKPWDT----------PQLAAELERWKLDGRDVSLLIGGPEGLSPACKA 114 (155)
T ss_dssp HTTSEEEEEEEEEECCCH----------HHHHHHHHHHHHHCSCEEEEECBTTBCCHHHHH
T ss_pred cCCCcEEEEcCCCCcCCH----------HHHHHHHHHHHhcCCeEEEEEECCCCCCHHHHH
Confidence 433345667778877776 578888888888887799999998888876543
No 117
>1v63_A Nucleolar transcription factor 1; DNA binding, structural genomics, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Mus musculus} SCOP: a.21.1.1
Probab=21.61 E-value=1.5e+02 Score=24.65 Aligned_cols=38 Identities=8% Similarity=0.048 Sum_probs=31.2
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHCHHHHHH
Q 005041 300 VAARESSRRLQALQSQDRRKILLDVADALEANESLIKV 337 (717)
Q Consensus 300 ~~A~~A~~~w~~~~~~~R~~~L~~~a~~l~~~~~el~~ 337 (717)
+.++..-..|+.++.+++..+.......-+++..++..
T Consensus 36 eisK~lge~Wk~ls~~eK~~Y~~~A~~~k~~Y~~e~~~ 73 (101)
T 1v63_A 36 ERMVEIGSRWQRISQSQKEHYKKLAEEQQRQYKVHLDL 73 (101)
T ss_dssp HHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34677778899999999999998888877777777765
No 118
>1hry_A Human SRY; DNA, DNA-binding protein, DNA binding protein/DNA complex; HET: DNA; NMR {Homo sapiens} SCOP: a.21.1.1 PDB: 1hrz_A*
Probab=21.29 E-value=1.4e+02 Score=23.09 Aligned_cols=31 Identities=3% Similarity=0.146 Sum_probs=22.6
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHHHHHCH
Q 005041 302 ARESSRRLQALQSQDRRKILLDVADALEANE 332 (717)
Q Consensus 302 A~~A~~~w~~~~~~~R~~~L~~~a~~l~~~~ 332 (717)
++..-..|+.+|.++|..+.......-+++.
T Consensus 36 sk~lg~~Wk~ls~~eK~~y~~~A~~~k~~y~ 66 (76)
T 1hry_A 36 SKQLGYQWKMLTEAEKWPFFQEAQKLQAMHR 66 (76)
T ss_dssp HHHHHHHHHTCCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhHHHhCCHHHHHHHHHHHHHHHHHHH
Confidence 4556667999999999998776655544443
No 119
>1xpj_A Hypothetical protein; structural genomics, MCSG, protein STR initiative, PSI, midwest center for structural genomics, UN function; HET: TLA; 2.30A {Vibrio cholerae} SCOP: c.108.1.18
Probab=21.23 E-value=1.5e+02 Score=25.49 Aligned_cols=43 Identities=23% Similarity=0.447 Sum_probs=31.9
Q ss_pred CeEEEEeCCcccccCCC-----cccHHHHHHHHHHHHHHHHCCCeEEEEecC
Q 005041 17 KRVVVKVGTAVVTRSDG-----RLALGRLGALLEQLKELNSQGFEIILVSSG 63 (717)
Q Consensus 17 ~~iVvKiGGs~l~~~~~-----~~~~~~l~~l~~~Ia~l~~~G~~vviVhGG 63 (717)
+.++.=+.|..+.+... .+. ....+.|..+++.|++++++.|-
T Consensus 2 k~i~~DlDGTL~~~~~~~~~~~~~~----~~~~~~l~~l~~~Gi~~~iaTGR 49 (126)
T 1xpj_A 2 KKLIVDLDGTLTQANTSDYRNVLPR----LDVIEQLREYHQLGFEIVISTAR 49 (126)
T ss_dssp CEEEECSTTTTBCCCCSCGGGCCBC----HHHHHHHHHHHHTTCEEEEEECT
T ss_pred CEEEEecCCCCCCCCCCccccCCCC----HHHHHHHHHHHhCCCeEEEEeCC
Confidence 56788899999976432 122 45667788888999999999865
No 120
>3pgv_A Haloacid dehalogenase-like hydrolase; structural genomics, joint center for structural genomics, J protein structure initiative; HET: EPE; 2.39A {Klebsiella pneumoniae subsp}
Probab=20.33 E-value=1.2e+02 Score=29.75 Aligned_cols=46 Identities=15% Similarity=0.211 Sum_probs=34.1
Q ss_pred ccCCeEEEEeCCcccccCCCcccHHHHHHHHHHHHHHHHCCCeEEEEecCh
Q 005041 14 KNVKRVVVKVGTAVVTRSDGRLALGRLGALLEQLKELNSQGFEIILVSSGA 64 (717)
Q Consensus 14 ~~~~~iVvKiGGs~l~~~~~~~~~~~l~~l~~~Ia~l~~~G~~vviVhGGg 64 (717)
++.+.++.=+.|..+.+.. .+. ....+.|..++++|++++++.|=.
T Consensus 19 ~~~kli~~DlDGTLl~~~~-~i~----~~~~~al~~l~~~G~~v~iaTGR~ 64 (285)
T 3pgv_A 19 GMYQVVASDLDGTLLSPDH-FLT----PYAKETLKLLTARGINFVFATGRH 64 (285)
T ss_dssp --CCEEEEECCCCCSCTTS-CCC----HHHHHHHHHHHTTTCEEEEECSSC
T ss_pred CcceEEEEeCcCCCCCCCC-cCC----HHHHHHHHHHHHCCCEEEEEcCCC
Confidence 4568899999999998653 454 355677888889999988887543
No 121
>3dao_A Putative phosphatse; structural genomics, joint center for S genomics, JCSG, protein structure initiative, PSI-2, hydrol; HET: MSE 1PE CIT; 1.80A {Eubacterium rectale}
Probab=20.29 E-value=1.1e+02 Score=30.00 Aligned_cols=47 Identities=11% Similarity=0.200 Sum_probs=35.3
Q ss_pred ccCCeEEEEeCCcccccCCCcccHHHHHHHHHHHHHHHHCCCeEEEEecCh
Q 005041 14 KNVKRVVVKVGTAVVTRSDGRLALGRLGALLEQLKELNSQGFEIILVSSGA 64 (717)
Q Consensus 14 ~~~~~iVvKiGGs~l~~~~~~~~~~~l~~l~~~Ia~l~~~G~~vviVhGGg 64 (717)
++.+.++.=+.|..+.+....+. ....+.|+.++++|++++++.|=.
T Consensus 19 ~~~kli~~DlDGTLl~~~~~~i~----~~~~~al~~l~~~G~~v~iaTGR~ 65 (283)
T 3dao_A 19 GMIKLIATDIDGTLVKDGSLLID----PEYMSVIDRLIDKGIIFVVCSGRQ 65 (283)
T ss_dssp CCCCEEEECCBTTTBSTTCSCCC----HHHHHHHHHHHHTTCEEEEECSSC
T ss_pred cCceEEEEeCcCCCCCCCCCcCC----HHHHHHHHHHHHCCCEEEEEcCCC
Confidence 45678999999999976542454 456677888889999988887543
No 122
>1gt0_D Transcription factor SOX-2; POU factors, SOX proteins; 2.6A {Mus musculus} SCOP: a.21.1.1 PDB: 2le4_A 1o4x_B
Probab=20.08 E-value=1.2e+02 Score=23.75 Aligned_cols=32 Identities=6% Similarity=0.122 Sum_probs=23.8
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHHHHHCH
Q 005041 301 AARESSRRLQALQSQDRRKILLDVADALEANE 332 (717)
Q Consensus 301 ~A~~A~~~w~~~~~~~R~~~L~~~a~~l~~~~ 332 (717)
.++..-..|+.+|.++|..+.......-+++.
T Consensus 33 isk~lg~~Wk~ls~eeK~~y~~~A~~~k~~y~ 64 (80)
T 1gt0_D 33 ISKRLGAEWKLLSETEKRPFIDEAKRLRALHM 64 (80)
T ss_dssp HHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHH
Confidence 45666778999999999999877665554443
Done!