Query 005042
Match_columns 717
No_of_seqs 532 out of 3203
Neff 7.6
Searched_HMMs 46136
Date Thu Mar 28 17:06:43 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/005042.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/005042hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0498 K+-channel ERG and rel 100.0 6E-118 1E-122 1008.8 49.3 574 64-716 64-639 (727)
2 PLN03192 Voltage-dependent pot 100.0 1E-69 2.3E-74 650.6 51.8 480 37-609 21-500 (823)
3 KOG0501 K+-channel KCNQ [Inorg 100.0 2E-66 4.4E-71 550.7 25.5 498 64-654 204-703 (971)
4 KOG0500 Cyclic nucleotide-gate 100.0 1.3E-62 2.9E-67 518.9 36.7 428 85-605 4-433 (536)
5 KOG0499 Cyclic nucleotide-gate 100.0 2.7E-57 5.9E-62 483.4 32.0 424 67-597 217-643 (815)
6 PRK09392 ftrB transcriptional 99.6 3.7E-14 8E-19 146.1 18.4 130 471-611 6-135 (236)
7 KOG3713 Voltage-gated K+ chann 99.5 1.1E-12 2.3E-17 142.0 17.8 191 120-408 241-438 (477)
8 PRK11753 DNA-binding transcrip 99.5 3.9E-12 8.5E-17 128.5 19.2 118 481-608 6-124 (211)
9 PF00520 Ion_trans: Ion transp 99.4 7.6E-13 1.6E-17 131.1 12.2 193 123-396 1-200 (200)
10 cd00038 CAP_ED effector domain 99.4 2.7E-12 5.8E-17 114.8 13.6 111 479-600 1-112 (115)
11 PRK11161 fumarate/nitrate redu 99.4 6.6E-12 1.4E-16 129.2 15.8 123 474-608 15-139 (235)
12 smart00100 cNMP Cyclic nucleot 99.4 1.8E-11 4E-16 109.9 14.9 116 479-603 1-117 (120)
13 PRK10402 DNA-binding transcrip 99.4 6.2E-12 1.3E-16 128.8 13.1 109 488-607 24-133 (226)
14 PF00027 cNMP_binding: Cyclic 99.3 6.9E-12 1.5E-16 108.2 10.7 89 498-597 2-91 (91)
15 COG0664 Crp cAMP-binding prote 99.3 8.7E-11 1.9E-15 117.8 17.8 126 475-611 3-129 (214)
16 KOG0614 cGMP-dependent protein 99.2 3.3E-11 7.3E-16 130.0 8.8 132 468-608 268-400 (732)
17 KOG1419 Voltage-gated K+ chann 99.2 1.8E-10 3.9E-15 125.1 13.9 91 343-440 265-355 (654)
18 TIGR03697 NtcA_cyano global ni 99.2 4.4E-10 9.6E-15 111.7 14.3 125 503-641 1-126 (193)
19 PRK09391 fixK transcriptional 99.2 3.4E-10 7.5E-15 116.2 13.8 108 490-611 33-141 (230)
20 PLN02868 acyl-CoA thioesterase 99.1 4.8E-10 1E-14 125.1 14.0 113 471-596 7-119 (413)
21 PRK13918 CRP/FNR family transc 99.1 1.9E-09 4.1E-14 108.1 15.9 126 494-642 5-133 (202)
22 COG2905 Predicted signal-trans 99.1 1.4E-09 3.1E-14 119.3 15.4 116 471-600 6-121 (610)
23 KOG1113 cAMP-dependent protein 99.1 4.1E-10 8.9E-15 117.1 9.0 122 471-607 121-242 (368)
24 KOG0614 cGMP-dependent protein 99.0 2.2E-10 4.7E-15 123.8 6.7 130 466-610 148-277 (732)
25 KOG1545 Voltage-gated shaker-l 99.0 4E-11 8.6E-16 123.8 -0.6 54 350-403 396-449 (507)
26 PF07885 Ion_trans_2: Ion chan 98.9 1.4E-08 3E-13 86.2 10.8 55 347-401 24-78 (79)
27 KOG1113 cAMP-dependent protein 98.7 1.7E-08 3.7E-13 105.2 7.0 118 466-597 234-351 (368)
28 KOG1420 Ca2+-activated K+ chan 98.7 2.5E-08 5.3E-13 108.4 6.5 137 345-489 286-427 (1103)
29 KOG4390 Voltage-gated A-type K 98.5 1.1E-08 2.4E-13 106.6 -3.2 51 350-400 359-413 (632)
30 KOG2968 Predicted esterase of 98.1 3.7E-06 8E-11 96.5 6.7 113 487-610 500-613 (1158)
31 PF08412 Ion_trans_N: Ion tran 98.0 2.5E-06 5.4E-11 71.1 1.7 49 53-101 20-70 (77)
32 PRK10537 voltage-gated potassi 97.9 0.00011 2.5E-09 81.0 14.1 54 347-400 168-221 (393)
33 KOG3684 Ca2+-activated K+ chan 97.9 0.0017 3.8E-08 70.5 20.8 91 345-443 285-375 (489)
34 PF01007 IRK: Inward rectifier 97.7 0.00029 6.2E-09 76.1 11.8 59 345-403 82-142 (336)
35 KOG2968 Predicted esterase of 97.4 0.00076 1.7E-08 78.1 11.1 113 490-607 110-224 (1158)
36 KOG1418 Tandem pore domain K+ 97.2 0.0006 1.3E-08 75.9 7.4 61 347-407 115-175 (433)
37 PRK11832 putative DNA-binding 97.0 0.011 2.5E-07 59.0 12.8 96 487-596 14-110 (207)
38 PF04831 Popeye: Popeye protei 96.6 0.068 1.5E-06 50.4 14.2 107 482-598 14-122 (153)
39 KOG2302 T-type voltage-gated C 96.4 0.06 1.3E-06 63.3 14.3 89 64-178 1101-1200(1956)
40 KOG3542 cAMP-regulated guanine 96.0 0.0092 2E-07 67.1 5.6 114 468-596 277-392 (1283)
41 PLN03223 Polycystin cation cha 95.9 1.5 3.3E-05 54.3 23.4 31 373-403 1395-1425(1634)
42 KOG4404 Tandem pore domain K+ 95.9 0.055 1.2E-06 56.7 10.1 57 348-404 187-251 (350)
43 KOG3193 K+ channel subunit [In 94.8 0.042 9.2E-07 60.7 5.5 39 349-387 219-257 (1087)
44 KOG3827 Inward rectifier K+ ch 94.4 0.21 4.5E-06 53.8 9.4 61 346-406 111-173 (400)
45 KOG4404 Tandem pore domain K+ 94.1 0.0078 1.7E-07 62.9 -1.8 48 346-393 79-126 (350)
46 KOG1418 Tandem pore domain K+ 91.5 0.042 9.1E-07 61.1 -0.9 49 346-394 241-297 (433)
47 KOG0498 K+-channel ERG and rel 89.8 12 0.00026 44.7 17.1 42 455-496 371-417 (727)
48 KOG2301 Voltage-gated Ca2+ cha 86.6 9.5 0.00021 49.4 14.5 47 117-183 870-917 (1592)
49 KOG3542 cAMP-regulated guanine 85.2 1.1 2.5E-05 51.1 4.9 106 458-586 23-128 (1283)
50 KOG2302 T-type voltage-gated C 80.4 1.5E+02 0.0033 36.4 23.3 58 79-145 80-140 (1956)
51 KOG3676 Ca2+-permeable cation 77.7 1.7E+02 0.0036 35.2 20.0 73 360-433 601-680 (782)
52 COG4709 Predicted membrane pro 77.7 9.8 0.00021 37.3 7.6 71 414-486 7-81 (195)
53 KOG3614 Ca2+/Mg2+-permeable ca 75.0 2.5E+02 0.0054 35.9 22.7 67 162-231 853-919 (1381)
54 PF08006 DUF1700: Protein of u 73.6 17 0.00037 35.7 8.6 55 414-470 7-65 (181)
55 PF07883 Cupin_2: Cupin domain 66.9 7.7 0.00017 31.1 3.8 44 498-548 3-47 (71)
56 PF14377 DUF4414: Domain of un 65.3 11 0.00024 33.8 4.7 45 424-468 51-105 (108)
57 TIGR03037 anthran_nbaC 3-hydro 64.8 15 0.00032 35.4 5.7 64 507-588 43-106 (159)
58 PRK13290 ectC L-ectoine syntha 64.4 28 0.0006 32.2 7.3 69 497-584 39-107 (125)
59 KOG2301 Voltage-gated Ca2+ cha 56.4 5.8E+02 0.013 33.9 19.1 52 114-186 468-520 (1592)
60 PF13314 DUF4083: Domain of un 56.3 52 0.0011 25.9 6.2 47 373-422 4-56 (58)
61 PRK13264 3-hydroxyanthranilate 55.7 27 0.00058 34.2 5.8 62 511-589 52-113 (177)
62 PF00060 Lig_chan: Ligand-gate 53.2 14 0.00031 34.3 3.5 76 343-424 40-115 (148)
63 PLN03192 Voltage-dependent pot 51.5 5.5E+02 0.012 31.6 20.3 43 424-471 357-399 (823)
64 TIGR00870 trp transient-recept 47.6 5.9E+02 0.013 30.8 27.8 46 371-416 586-632 (743)
65 PF10011 DUF2254: Predicted me 46.0 96 0.0021 34.3 9.1 61 345-405 98-158 (371)
66 KOG3609 Receptor-activated Ca2 45.1 3E+02 0.0065 33.4 13.1 55 349-403 555-614 (822)
67 PF05899 Cupin_3: Protein of u 43.9 36 0.00079 28.1 4.1 42 500-549 14-55 (74)
68 KOG3599 Ca2+-modulated nonsele 43.0 7.2E+02 0.016 30.5 18.4 23 119-141 498-520 (798)
69 smart00835 Cupin_1 Cupin. This 38.2 78 0.0017 29.7 6.0 53 495-549 32-86 (146)
70 PF07697 7TMR-HDED: 7TM-HD ext 37.7 1.2E+02 0.0027 30.2 7.8 33 482-514 173-207 (222)
71 COG1917 Uncharacterized conser 34.8 79 0.0017 28.9 5.3 50 495-551 45-95 (131)
72 PF14377 DUF4414: Domain of un 33.7 75 0.0016 28.5 4.7 47 425-472 8-68 (108)
73 PF02037 SAP: SAP domain; Int 33.0 84 0.0018 22.0 3.9 26 413-438 5-35 (35)
74 COG0662 {ManC} Mannose-6-phosp 32.8 97 0.0021 28.4 5.5 47 495-548 38-85 (127)
75 KOG4440 NMDA selective glutama 30.4 1.4E+02 0.0031 34.7 7.1 52 349-400 615-666 (993)
76 PF08016 PKD_channel: Polycyst 28.1 6.6E+02 0.014 28.1 12.3 20 162-181 233-253 (425)
77 KOG1053 Glutamate-gated NMDA-t 27.7 8.7E+02 0.019 30.0 13.0 47 352-400 616-662 (1258)
78 PF01484 Col_cuticle_N: Nemato 27.7 2.7E+02 0.0058 20.9 6.8 42 376-417 8-49 (53)
79 PF06249 EutQ: Ethanolamine ut 26.6 1.8E+02 0.004 27.8 6.2 51 512-583 94-144 (152)
80 PRK04190 glucose-6-phosphate i 26.2 2.3E+02 0.005 28.2 7.2 52 496-549 71-131 (191)
81 PHA03029 hypothetical protein; 24.6 3.6E+02 0.0079 22.4 6.6 36 371-406 2-37 (92)
82 PF12973 Cupin_7: ChrR Cupin-l 24.5 1.1E+02 0.0024 26.1 4.1 64 494-582 25-88 (91)
83 PRK06771 hypothetical protein; 22.6 4.1E+02 0.0088 23.3 6.9 60 374-436 2-61 (93)
84 KOG1054 Glutamate-gated AMPA-t 22.3 1E+02 0.0022 35.6 4.2 71 349-425 597-667 (897)
85 COG5559 Uncharacterized conser 22.0 86 0.0019 24.8 2.5 19 451-469 5-23 (65)
86 TIGR03404 bicupin_oxalic bicup 21.3 2.2E+02 0.0047 31.5 6.5 51 496-549 70-121 (367)
87 PRK11171 hypothetical protein; 21.3 1.9E+02 0.0042 30.3 5.9 49 494-549 185-234 (266)
88 COG3837 Uncharacterized conser 20.9 1.2E+02 0.0026 29.2 3.7 47 498-551 47-95 (161)
No 1
>KOG0498 consensus K+-channel ERG and related proteins, contain PAS/PAC sensor domain [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=100.00 E-value=5.7e-118 Score=1008.79 Aligned_cols=574 Identities=51% Similarity=0.843 Sum_probs=511.0
Q ss_pred CCCCeeecCCChHHHHHHHHHHHHHHHHHhhhccccccccccCCccccccccchhHHHHHHHHHHHHHHHHhHhhhceee
Q 005042 64 VSDKIIIDPQDRSLLFWNRLFVFTCFISVSIDPLFFYLPFFDKENYCLGMDVQLAAAITTFRSILDCIYSCRIPFQFRTA 143 (717)
Q Consensus 64 ~~~~~ii~P~s~~~~~W~~~~li~~i~~~~v~Pl~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~Di~f~~Di~l~F~ta 143 (717)
...++|++|+|++++.||++++++|+|+++++|++|+++..++...| +|..+...++++|+++|+||++||+++||||
T Consensus 64 ~~~~~Ii~P~s~~~~~W~~~~Ll~~iya~~v~P~~f~f~~~~~~~~~--~d~~~~~~l~v~d~ivD~fflvdIvL~Frta 141 (727)
T KOG0498|consen 64 KSRKWILDPYSPFYRVWNKFFLLLVIYAAFVDPLFFYFLLIDDERKC--IDGKLAAPLTVLDTIVDIFFLVDIVLNFRTA 141 (727)
T ss_pred cccceeECCCChHHHHHHHHHHHHHHHHHHhccceeeEEeccccccc--ccccccCceeeHHHHHHHHHHHHHHHhheEE
Confidence 44467999999999999999999999999999999999999999999 8999999999999999999999999999999
Q ss_pred EEcCCCcccCCCeEeeCHHHHHHHHHhhhhHHHhhhccchhhhhhheeecCccchhh-hhhhhhhHHHHHhHhhhhhhhh
Q 005042 144 YIAPSSRVFGRGELVVDPALISRRYFRRLFLVDFLSVLPIPQLLVSVYLSDTRAKVF-STKEALPLLIILQYVPRILRIF 222 (717)
Q Consensus 144 y~~~~s~~~~~G~lV~d~~~Ia~rYl~~~F~iDlls~lPl~~i~~~~~~~~~~~~~~-~~~~~Lrli~l~q~l~Rl~ri~ 222 (717)
|++++|+ ++|.||++||+||+++||++|++|++|+|++++|.++ ++... .....|..+.++||+||+.|++
T Consensus 142 yv~~~s~-----elV~dpk~IA~rYl~twFiiDlis~lP~~~i~~~~~~---~~~~~~~~~~~l~~il~~~rL~Rl~Rv~ 213 (727)
T KOG0498|consen 142 YVDPSSY-----ELVDDPKKIAKRYLKTWFLIDLISTLPFDQIVVLVVI---GSTSLALESTILVGILLLQRLPRLRRVI 213 (727)
T ss_pred EECCCCc-----eeeeCHHHHHHHHHhhhHHHHHHHhcChhhheeeeee---cccchhhhHHHHHHHHHHHHHHHHHHHH
Confidence 9999963 7999999999999999999999999999999999887 22222 2334677888899999999999
Q ss_pred hhhhhhhhhhhHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhhhhHHhhcccCCCCcccccccCCCCCCccccc
Q 005042 223 PLISELKKTVGVFVESALGGAAYYLLCYIVCSHIVGAFWYLLAVERNFTCWQQACNQTGRCSHSFLYCHNTNFGGFDDWK 302 (717)
Q Consensus 223 ~l~~~l~~~~~~~~~~~~~~~~~~lll~~l~~H~~aC~wy~~~~~~~~~~w~~~c~~~~~c~~~~l~c~~~~~~~~~sW~ 302 (717)
+++.++++..+++.+++|+++++++++|||++||.||+||++|.+++.+||+++|.....|. +++|
T Consensus 214 ~l~~r~~k~~~~v~~~awa~~a~ll~~~~l~sH~~gc~wYlia~~~~~~~~~~~tw~~~l~~--~~~~------------ 279 (727)
T KOG0498|consen 214 PLFARLEKDTGFVYETAWAGAALLLSVYLLASHWAGCIWYLIAIERPASCPRKATWLGSLGR--LLSC------------ 279 (727)
T ss_pred HHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCcccccccccccc--cccc------------
Confidence 99999999999999999999999999999999999999999999999999976422111111 2222
Q ss_pred cchhhhhcccccCcCCCCCccchhhhhhhhhhhhcCCCCcchHHHHHHHHHHHHHhhccccCCCCccCchhHHHHHHHHH
Q 005042 303 QTREHIIDHKCHAMEGNPEFNFGIYLKAITYEIHLSGKSGQFLSKLFYCLWFGLQNLSTLGQGLKTSTYIQEIIFSILIG 382 (717)
Q Consensus 303 ~~~~~~l~~~c~~~~~~~~f~~giy~~~~~~~v~~~g~~~~~~~~Y~~slywal~tlttvGygd~~~~~~~E~~f~i~i~ 382 (717)
.+..|+||+|.+ +.+|++|+|||++||||+|||+++|+|..|++|+|++|
T Consensus 280 ---------------~~~~~~fg~~s~---------------~~kY~~aLyw~l~tLstvG~g~~~s~~~~E~iFsi~~m 329 (727)
T KOG0498|consen 280 ---------------YNLSFTFGIYSL---------------ALKYVYALYWGLSTLSTVGYGLVHANNMGEKIFSIFIM 329 (727)
T ss_pred ---------------CcccccccchhH---------------HHHHHHHHHHHhhHhhhccCCccCCCCcHHHHHHHHHH
Confidence 223367887554 56999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHhhhcCCCHHHHHHhCChhHH
Q 005042 383 IAGLVLLALLIGNMQTYLTSLTVRLEEMRIKRRDSEQWMHHRWLPQDLRERVRRYDHFKWLETRGVDEEHLVQNLPKDLR 462 (717)
Q Consensus 383 i~G~~lfa~lIg~~~~~l~~~~~~~~e~~~k~~~~~~~m~~~~lp~~L~~rV~~y~~y~w~~~~~~de~~ll~~Lp~~Lr 462 (717)
++|+++||++||||++++|+++.+.++||.|++|+++||++|+||++||+||++|+||+|+.++|+||+++|++||++||
T Consensus 330 i~GllL~A~lIGNmt~~iqs~tsR~~~~r~k~rd~e~~m~~~~LP~~LRqRi~~y~q~kw~~t~Gvdee~lL~~LP~~LR 409 (727)
T KOG0498|consen 330 LFGLLLFAYLIGNMTALLQSLTSRTEEMRDKMRDAEQWMSRRQLPPDLRQRIRRYEQYKWLATRGVDEEELLQSLPKDLR 409 (727)
T ss_pred HHhHHHHHHHHhhHHHhHHHHhHHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHhhccCcCHHHHHHhCCHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhccCcCCCCCcHHHHHHHHhhceeEEecCCcEEEccCCCcceEEEEEeeEEEEEEecCCeeeeeeeeec
Q 005042 463 RDIKRHLCLNLVRRVPLFANMDERLLDAICERLKPSLCTEGTCVVREGDPVVEMLLIIRGSLESVTTDGGRTGFYNRGML 542 (717)
Q Consensus 463 ~~I~~~l~~~lL~~iplF~~ls~~~l~~l~~~l~~~~~~~ge~Ii~eGd~~~~myfI~~G~v~v~~~~~g~e~~~~~~~l 542 (717)
+||++|+|.++++++|+|+++|++++++||.++++..|+|||+|++|||++++||||.+|.+++.++++|.+ .+...|
T Consensus 410 ~dI~~hL~~~lv~~vpLF~~md~~~L~al~~rlk~~~f~pge~iireGd~v~~myFI~rG~le~~~~~~g~~--~~~~~L 487 (727)
T KOG0498|consen 410 RDIKRHLCLDLVRKVPLFAGMDDGLLDALCSRLKPEYFTPGEYIIREGDPVTDMYFIVRGSLESITTDGGGF--FVVAIL 487 (727)
T ss_pred HHHHHHHhHHHHhhCchhhcCCHHHHHHHHHHhhhhccCCCCeEEecCCccceeEEEEeeeEEEEEccCCce--EEEEEe
Confidence 999999999999999999999999999999999999999999999999999999999999999999888844 458999
Q ss_pred CCCCeecHHhHhhhcCCCCCCCCCCcccEEEEcceeEEEEEcHHHHHHHHHhcHHHHHHHHHHHHHhhhhhhhhHHHHHH
Q 005042 543 KEGDFCGEELLTWALDPKSVTNLPLSTRTVRALDEVEAFSLRAEELKFVASQFRRLHSRQVQHTFRFYSHQWRTWAACFI 622 (717)
Q Consensus 543 ~~Gd~fGe~~l~~~l~~~~~~n~p~s~~tv~A~t~~el~~L~~~df~~ll~~~P~l~~k~l~~~~r~~s~~~~~~~~~~~ 622 (717)
++||+|||+.++|+++ .| +++||+|+|.|+++.|++++|++++++||++++++++|++|+|+++|++|++|++
T Consensus 488 ~~Gd~~GeEl~~~~~~-~p------~t~TVralt~~el~~L~~~dL~~V~~~f~~~~~~~l~~~~r~~s~~~r~~aa~~i 560 (727)
T KOG0498|consen 488 GPGDFFGEELLTWCLD-LP------QTRTVRALTYCELFRLSADDLKEVLQQFRRLGSKFLQHTFRYYSHLWRTWAACFI 560 (727)
T ss_pred cCCCccchHHHHHHhc-CC------CCceeehhhhhhHHhccHHHHHHHHHHhHHHHHHHHHhHHHHhhhhhhhhhhhhH
Confidence 9999999887778775 22 5899999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhHHHHHHHhhhccccccccccccccCCCCCCCCCCCCcchhhHHHHHHHHHHHhhc-cccccCcCCCCCc
Q 005042 623 QATWRRKSQRKKATEQRLKEEGERIDYGEVSHGALADQPSADSGDAPSRLRATVLASRFAANALRG-HRHRASVATSPPR 701 (717)
Q Consensus 623 q~~~~~~~~r~~~~~~~~~~~er~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~ 701 (717)
|++|+++.+|+.. ......++.-. .. .++.+...+++++.+|++||+|++++ +...++ .....
T Consensus 561 q~a~r~~~~~~~~-~~l~~~~~~~~---------~~----~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~--~~~~~ 624 (727)
T KOG0498|consen 561 QAAWRRHIKRKGE-EELALEEEESA---------IR----GDDRGSKSLLRAGILASRFAANGRPPLHTAASR--GSSDC 624 (727)
T ss_pred HHHHHHHHHhhcc-chhhhhcchhh---------hc----cccccchhhhhcccccccccccCCCcccccccc--Ccccc
Confidence 9999999999987 32222211100 00 02445568899999999999999999 444321 25567
Q ss_pred ccCCCCCCCCCCCCC
Q 005042 702 RLINLQKPSEPDFNA 716 (717)
Q Consensus 702 ~~~~~~~~~~~~~~~ 716 (717)
.++.++||+||||+.
T Consensus 625 ~~~~~~~~~~p~f~~ 639 (727)
T KOG0498|consen 625 ALLLLQKPADPDFSD 639 (727)
T ss_pred ccccCCCCCCCCccc
Confidence 788999999999984
No 2
>PLN03192 Voltage-dependent potassium channel; Provisional
Probab=100.00 E-value=1e-69 Score=650.62 Aligned_cols=480 Identities=22% Similarity=0.331 Sum_probs=400.6
Q ss_pred ccchhHHhhhcchhhhhhccccCCcccCCCCeeecCCChHHHHHHHHHHHHHHHHHhhhccccccccccCCccccccccc
Q 005042 37 VGSRWLLRFGESLRSVVARAVIPTDLKVSDKIIIDPQDRSLLFWNRLFVFTCFISVSIDPLFFYLPFFDKENYCLGMDVQ 116 (717)
Q Consensus 37 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~P~s~~~~~W~~~~li~~i~~~~v~Pl~~~~~~~~~~~~c~~~~~~ 116 (717)
+++..+.++++.+.+....+.+.+.....+++||+|+++++++||.+++++++|+++++||.+++ .+..
T Consensus 21 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~P~~~~~~~Wd~~~~~~~~y~~~~~p~~~~F--~~~~--------- 89 (823)
T PLN03192 21 SGSLSLRNLSKVILPPLGVPSYNQNHIGSDGWIISPMDSRYRWWETLMVVLVAYSAWVYPFEVAF--LNAS--------- 89 (823)
T ss_pred CcceehhhcchhhccccCCCccccCccccCCeEECCCCcHHHHHHHHHHHHHHHHHHHHHHHHHe--eCCC---------
Confidence 44566777777777765555566666677789999999999999999999999999999999654 2211
Q ss_pred hhHHHHHHHHHHHHHHHHhHhhhceeeEEcCCCcccCCCeEeeCHHHHHHHHHhhhhHHHhhhccchhhhhhheeecCcc
Q 005042 117 LAAAITTFRSILDCIYSCRIPFQFRTAYIAPSSRVFGRGELVVDPALISRRYFRRLFLVDFLSVLPIPQLLVSVYLSDTR 196 (717)
Q Consensus 117 ~~~~~~~~~~~~Di~f~~Di~l~F~tay~~~~s~~~~~G~lV~d~~~Ia~rYl~~~F~iDlls~lPl~~i~~~~~~~~~~ 196 (717)
....+.+++.++|++|++||+++|+|||+++. .|.+|.||++|++||+++||++|++|++|++.+.......
T Consensus 90 ~~~~~~~~d~i~~~~F~iDi~l~f~~ay~d~~-----~~~lV~d~~~I~~~Yl~~~f~~Dlis~lP~~~i~~~~~~~--- 161 (823)
T PLN03192 90 PKRGLEIADNVVDLFFAVDIVLTFFVAYIDPR-----TQLLVRDRKKIAVRYLSTWFLMDVASTIPFQALAYLITGT--- 161 (823)
T ss_pred CCCCeeeHHHHHHHHHHHHHHhheeEEEEeCC-----CcEEEeCHHHHHHHHHHHhHHHHHHHHhHHHHHHHHhcCC---
Confidence 11245678999999999999999999999986 4889999999999999999999999999998775432211
Q ss_pred chhhhhhhhhhHHHHHhHhhhhhhhhhhhhhhhhhhhHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhhhhHHh
Q 005042 197 AKVFSTKEALPLLIILQYVPRILRIFPLISELKKTVGVFVESALGGAAYYLLCYIVCSHIVGAFWYLLAVERNFTCWQQA 276 (717)
Q Consensus 197 ~~~~~~~~~Lrli~l~q~l~Rl~ri~~l~~~l~~~~~~~~~~~~~~~~~~lll~~l~~H~~aC~wy~~~~~~~~~~w~~~ 276 (717)
........+|+++| +.|+.|+.+++.++++... ..+.|...+..+++.++++||+||+||+++..
T Consensus 162 ~~~~~~~~~l~llr----l~Rl~ri~~~~~~le~~~~--~~~~~~~~~kli~~~l~~~H~~aC~~y~i~~~--------- 226 (823)
T PLN03192 162 VKLNLSYSLLGLLR----FWRLRRVKQLFTRLEKDIR--FSYFWIRCARLLSVTLFLVHCAGCLYYLIADR--------- 226 (823)
T ss_pred ccchHHHHHHHHHH----HHHHHHHHHHHHHHHHHHH--hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh---------
Confidence 11111123333333 4455555566665554332 22346666776777778999999999999842
Q ss_pred hcccCCCCcccccccCCCCCCccccccchhhhhcccccCcCCCCCccchhhhhhhhhhhhcCCCCcchHHHHHHHHHHHH
Q 005042 277 CNQTGRCSHSFLYCHNTNFGGFDDWKQTREHIIDHKCHAMEGNPEFNFGIYLKAITYEIHLSGKSGQFLSKLFYCLWFGL 356 (717)
Q Consensus 277 c~~~~~c~~~~l~c~~~~~~~~~sW~~~~~~~l~~~c~~~~~~~~f~~giy~~~~~~~v~~~g~~~~~~~~Y~~slywal 356 (717)
+ ...+.+| +... .+. .. ..+++.+|++|+||++
T Consensus 227 ----------~-------~~~~~~W-------i~~~------~~~-------------~~----~~s~~~~Yi~slYwai 259 (823)
T PLN03192 227 ----------Y-------PHQGKTW-------IGAV------IPN-------------FR----ETSLWIRYISAIYWSI 259 (823)
T ss_pred ----------c-------CCCCCch-------HHHh------hhc-------------cc----cCcHHHHHHHHHHHHH
Confidence 1 1235689 3210 011 11 2689999999999999
Q ss_pred HhhccccCCCCccCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHH
Q 005042 357 QNLSTLGQGLKTSTYIQEIIFSILIGIAGLVLLALLIGNMQTYLTSLTVRLEEMRIKRRDSEQWMHHRWLPQDLRERVRR 436 (717)
Q Consensus 357 ~tlttvGygd~~~~~~~E~~f~i~i~i~G~~lfa~lIg~~~~~l~~~~~~~~e~~~k~~~~~~~m~~~~lp~~L~~rV~~ 436 (717)
+|||||||||++|.|..|++|++++|++|+++|||+||+|++++.+.+.+.++|+++++.+++||++++||++||+||++
T Consensus 260 ~TmtTVGYGDi~p~t~~E~i~~i~~ml~g~~~~a~~ig~i~~li~~~~~~~~~f~~~~~~~~~ym~~~~lp~~lq~ri~~ 339 (823)
T PLN03192 260 TTMTTVGYGDLHAVNTIEMIFIIFYMLFNLGLTAYLIGNMTNLVVEGTRRTMEFRNSIEAASNFVGRNRLPPRLKDQILA 339 (823)
T ss_pred HHHhhccCCCcCCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhhhcCCCHHHHHHhCChhHHHHHHHHHHHHHhccCcCCCCCcHHHHHHHHhhceeEEecCCcEEEccCCCcceE
Q 005042 437 YDHFKWLETRGVDEEHLVQNLPKDLRRDIKRHLCLNLVRRVPLFANMDERLLDAICERLKPSLCTEGTCVVREGDPVVEM 516 (717)
Q Consensus 437 y~~y~w~~~~~~de~~ll~~Lp~~Lr~~I~~~l~~~lL~~iplF~~ls~~~l~~l~~~l~~~~~~~ge~Ii~eGd~~~~m 516 (717)
|++|+|+. .+.+++++++.||++||.+|.++++.+.++++|+|++++++++.+++..++++.|+|||.|+.+||.++++
T Consensus 340 y~~~~~~~-~~~~~~~~l~~Lp~~Lr~~i~~~l~~~~l~~~~lF~~~s~~~l~~L~~~~~~~~~~pge~I~~qge~~~~l 418 (823)
T PLN03192 340 YMCLRFKA-ESLNQQQLIDQLPKSICKSICQHLFLPVVEKVYLFKGVSREILLLLVTKMKAEYIPPREDVIMQNEAPDDV 418 (823)
T ss_pred HHHHHHhh-ccccHHHHHHHcCHHHHHHHHHHHHHHHHhhCcchhcCCHHHHHHHHHhhheeeeCCCCEEEECCCCCceE
Confidence 99999985 56889999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEeeEEEEEEecCCeeeeeeeeecCCCCeecHHhHhhhcCCCCCCCCCCcccEEEEcceeEEEEEcHHHHHHHHHhcH
Q 005042 517 LLIIRGSLESVTTDGGRTGFYNRGMLKEGDFCGEELLTWALDPKSVTNLPLSTRTVRALDEVEAFSLRAEELKFVASQFR 596 (717)
Q Consensus 517 yfI~~G~v~v~~~~~g~e~~~~~~~l~~Gd~fGe~~l~~~l~~~~~~n~p~s~~tv~A~t~~el~~L~~~df~~ll~~~P 596 (717)
|||.+|.|++...+++++.+ +..+++||+|||.++ +.+.| ++++++|.++|+++.|++++|.++++++|
T Consensus 419 Y~I~~G~V~i~~~~~~~e~~--l~~l~~Gd~FGE~~~---l~~~p------~~~t~ra~~~s~ll~l~~~~f~~ll~~~p 487 (823)
T PLN03192 419 YIVVSGEVEIIDSEGEKERV--VGTLGCGDIFGEVGA---LCCRP------QSFTFRTKTLSQLLRLKTSTLIEAMQTRQ 487 (823)
T ss_pred EEEEecEEEEEEecCCccee--eEEccCCCEecchHH---hcCCC------CCCeEEEcccEEEEEEEHHHHHHHHHHhh
Confidence 99999999998877777766 789999999999988 55555 88999999999999999999999999999
Q ss_pred HHHHHHHHHHHHh
Q 005042 597 RLHSRQVQHTFRF 609 (717)
Q Consensus 597 ~l~~k~l~~~~r~ 609 (717)
+.....++...+.
T Consensus 488 ~d~~~i~~~~l~~ 500 (823)
T PLN03192 488 EDNVVILKNFLQH 500 (823)
T ss_pred HHHHHHHHHHHHH
Confidence 9888777776654
No 3
>KOG0501 consensus K+-channel KCNQ [Inorganic ion transport and metabolism]
Probab=100.00 E-value=2e-66 Score=550.69 Aligned_cols=498 Identities=23% Similarity=0.342 Sum_probs=406.0
Q ss_pred CCCCeeecCCChHHHHHHHHHHHHHHHHHhhhccccccccccCCccccccccchhHHHHHHHHHHHHHHHHhHhhhceee
Q 005042 64 VSDKIIIDPQDRSLLFWNRLFVFTCFISVSIDPLFFYLPFFDKENYCLGMDVQLAAAITTFRSILDCIYSCRIPFQFRTA 143 (717)
Q Consensus 64 ~~~~~ii~P~s~~~~~W~~~~li~~i~~~~v~Pl~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~Di~f~~Di~l~F~ta 143 (717)
+..+.||-.++.|+..||++++++.+|+++.+|+.++ |-+..+ ....|.+++.++|++|++||+++|+|.
T Consensus 204 KTpPHIiLHYcaFKt~WDWvIL~LTFYTAimVPyNva--FKnk~~--------~~vs~lvvDSiVDVIF~vDIvLNFHTT 273 (971)
T KOG0501|consen 204 KTPPHIILHYCAFKTIWDWVILILTFYTAIMVPYNVA--FKNKQR--------NNVSWLVVDSIVDVIFFVDIVLNFHTT 273 (971)
T ss_pred CCCCeEEEeeehhhhHHHHHHHHHHHHHHheeeeeee--eccccc--------CceeEEEecchhhhhhhhhhhhhccee
Confidence 4446699999999999999999999999999999954 433221 234677899999999999999999999
Q ss_pred EEcCCCcccCCCeEeeCHHHHHHHHHhhhhHHHhhhccchhhhhhheeecCccchhhhhhhhhhHHHHHhHhhhhhhhhh
Q 005042 144 YIAPSSRVFGRGELVVDPALISRRYFRRLFLVDFLSVLPIPQLLVSVYLSDTRAKVFSTKEALPLLIILQYVPRILRIFP 223 (717)
Q Consensus 144 y~~~~s~~~~~G~lV~d~~~Ia~rYl~~~F~iDlls~lPl~~i~~~~~~~~~~~~~~~~~~~Lrli~l~q~l~Rl~ri~~ 223 (717)
|+.|- ||+|.||+.|..+|+|+||+||++|++|++++..+-..+. +..+ ....|+ +.||+|+.+
T Consensus 274 FVGPg------GEVvsdPkvIRmNYlKsWFvIDLLSCLPYDi~naF~~~de-gI~S--LFSaLK-------VVRLLRLGR 337 (971)
T KOG0501|consen 274 FVGPG------GEVVSDPKVIRMNYLKSWFVIDLLSCLPYDIFNAFERDDE-GIGS--LFSALK-------VVRLLRLGR 337 (971)
T ss_pred eecCC------CceecChhHHhHHHHHHHHHHHHHhcccHHHHHHhhcccc-cHHH--HHHHHH-------HHHHHHHHH
Confidence 99995 9999999999999999999999999999998876543332 2211 223343 567888888
Q ss_pred hhhhhhhhhhHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhhhhHHhhcccCCCCcccccccCCCCCCcccccc
Q 005042 224 LISELKKTVGVFVESALGGAAYYLLCYIVCSHIVGAFWYLLAVERNFTCWQQACNQTGRCSHSFLYCHNTNFGGFDDWKQ 303 (717)
Q Consensus 224 l~~~l~~~~~~~~~~~~~~~~~~lll~~l~~H~~aC~wy~~~~~~~~~~w~~~c~~~~~c~~~~l~c~~~~~~~~~sW~~ 303 (717)
+.+++.++. ++.-+..+..+++|++++||+||+||.+|..+-- ..- .+....++|+.
T Consensus 338 VaRKLD~Yl----EYGAA~LvLLlC~y~lvAHWlACiWysIGd~ev~-----------------~~~--~n~i~~dsWL~ 394 (971)
T KOG0501|consen 338 VARKLDHYL----EYGAAVLVLLLCVYGLVAHWLACIWYSIGDYEVR-----------------DEM--DNTIQPDSWLW 394 (971)
T ss_pred HHHHHHHHH----HhhHHHHHHHHHHHHHHHHHHHHhheeccchhee-----------------ccc--ccccccchHHH
Confidence 888887764 3333445666678999999999999999964311 000 11245678942
Q ss_pred chhhhhcccccCcCCCCCccchhhhhhhhhhhhcCCCCcchHHHHHHHHHHHHHhhccccCCCCccCchhHHHHHHHHHH
Q 005042 304 TREHIIDHKCHAMEGNPEFNFGIYLKAITYEIHLSGKSGQFLSKLFYCLWFGLQNLSTLGQGLKTSTYIQEIIFSILIGI 383 (717)
Q Consensus 304 ~~~~~l~~~c~~~~~~~~f~~giy~~~~~~~v~~~g~~~~~~~~Y~~slywal~tlttvGygd~~~~~~~E~~f~i~i~i 383 (717)
. | +++.+++|+|.. -..+....| .+--..|+.|+||..+.|||||+|++.|.|..|.+|++.+||
T Consensus 395 k----L-----a~~~~tpY~~~~----s~~~~~~gG--PSr~S~YissLYfTMt~mttvGFGNiA~~TD~EKiF~v~mMi 459 (971)
T KOG0501|consen 395 K----L-----ANDIGTPYNYNL----SNKGTLVGG--PSRTSAYISSLYFTMTCMTTVGFGNIAPNTDNEKIFGVCMMI 459 (971)
T ss_pred H----H-----HhhcCCCceecc----CCCceeecC--CcccceehhhhhhhhhhhhcccccccCCCccHHHHHHHHHHH
Confidence 1 1 145567777741 122333333 455678999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHhhhcCCCHHHHHHhCChhHHH
Q 005042 384 AGLVLLALLIGNMQTYLTSLTVRLEEMRIKRRDSEQWMHHRWLPQDLRERVRRYDHFKWLETRGVDEEHLVQNLPKDLRR 463 (717)
Q Consensus 384 ~G~~lfa~lIg~~~~~l~~~~~~~~e~~~k~~~~~~~m~~~~lp~~L~~rV~~y~~y~w~~~~~~de~~ll~~Lp~~Lr~ 463 (717)
+|.++||.++|+|++++|+|+.....|.+.+..+.+||+-.++|+.|.+||.+|.--.|..++|+|.+++|.-.|+++|.
T Consensus 460 i~aLLYAtIFG~vTTI~QQM~s~T~rYHeMlnnVReFlKL~evPK~LsERVMDYvVSTWaMtkGiDTeKVL~~CPKDMkA 539 (971)
T KOG0501|consen 460 IGALLYATIFGHVTTIIQQMTSNTNRYHEMLNNVREFLKLYEVPKGLSERVMDYVVSTWAMTKGIDTEKVLGYCPKDMKA 539 (971)
T ss_pred HHHHHHHHHHhhHHHHHHHHHhhhHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhhhhcCcCHHHHhhhCcccccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhccCcCCCCCcHHHHHHHHhhceeEEecCCcEEEccCCCcceEEEEEeeEEEEEEecCCeeeeeeeeecC
Q 005042 464 DIKRHLCLNLVRRVPLFANMDERLLDAICERLKPSLCTEGTCVVREGDPVVEMLLIIRGSLESVTTDGGRTGFYNRGMLK 543 (717)
Q Consensus 464 ~I~~~l~~~lL~~iplF~~ls~~~l~~l~~~l~~~~~~~ge~Ii~eGd~~~~myfI~~G~v~v~~~~~g~e~~~~~~~l~ 543 (717)
||..|+..+.+..+|.|+-.++..+++++..++..+..|||.|++.||..+.++||++|.+++...|+ ++++|+
T Consensus 540 DICVHLNRKVFnEHpaFRLASDGCLRaLAm~f~~~H~APGDLlYHtGESvDaLcFvVsGSLEVIQDDE------VVAILG 613 (971)
T KOG0501|consen 540 DICVHLNRKVFNEHPAFRLASDGCLRALAMEFQTNHCAPGDLLYHTGESVDALCFVVSGSLEVIQDDE------VVAILG 613 (971)
T ss_pred ceeeecchhhhccCcceeeccchhHHHHHHHHHhccCCCcceeeecCCccceEEEEEecceEEeecCc------EEEEee
Confidence 99999999999999999999999999999999999999999999999999999999999999987554 279999
Q ss_pred CCCeecHHhHhhhcCCCCCCCCCCcccEEEEcceeEEEEEcHHHHHHHHHhcHHHHHHHHHHHHHhhhhhhhhHHHHHH-
Q 005042 544 EGDFCGEELLTWALDPKSVTNLPLSTRTVRALDEVEAFSLRAEELKFVASQFRRLHSRQVQHTFRFYSHQWRTWAACFI- 622 (717)
Q Consensus 544 ~Gd~fGe~~l~~~l~~~~~~n~p~s~~tv~A~t~~el~~L~~~df~~ll~~~P~l~~k~l~~~~r~~s~~~~~~~~~~~- 622 (717)
.||+||+..+ -+ ..+..+.++|+|+|.|.+..|.++.+.++++-|..+++- ++|.++
T Consensus 614 KGDVFGD~FW---K~----~t~~qs~ANVRALTYcDLH~IKrd~Ll~VLdFYtAFanS---------------FaRNl~L 671 (971)
T KOG0501|consen 614 KGDVFGDEFW---KE----NTLGQSAANVRALTYCDLHMIKRDKLLKVLDFYTAFANS---------------FARNLTL 671 (971)
T ss_pred cCccchhHHh---hh----hhhhhhhhhhhhhhhhhhhHHhHHHHHHHHHHHHHHHHH---------------hhhceee
Confidence 9999999854 11 133447899999999999999999999998776654332 222221
Q ss_pred -HHHHHHHHHhhHHHHHHHhhhccccccccccc
Q 005042 623 -QATWRRKSQRKKATEQRLKEEGERIDYGEVSH 654 (717)
Q Consensus 623 -q~~~~~~~~r~~~~~~~~~~~er~~~~~~~~~ 654 (717)
-+.-.|..-|+++ +..+++|+|...++|...
T Consensus 672 TyNLr~RiiFRKva-DVKrEkE~~~krKNE~~L 703 (971)
T KOG0501|consen 672 TYNLRHRIIFRKVA-DVKREKELRAKRKNEPKL 703 (971)
T ss_pred Eeeccceeeeeehh-hhhhhHHHHHhhcCCCCC
Confidence 1233456668888 888888888776665433
No 4
>KOG0500 consensus Cyclic nucleotide-gated cation channel CNGA1-3 and related proteins [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=100.00 E-value=1.3e-62 Score=518.92 Aligned_cols=428 Identities=23% Similarity=0.362 Sum_probs=357.4
Q ss_pred HHHHHHHHhhhccccccccccCCccccccccchhHHHHHHHHHHHHHHHHhHhhhceeeEEcCCCcccCCCeEeeCHHHH
Q 005042 85 VFTCFISVSIDPLFFYLPFFDKENYCLGMDVQLAAAITTFRSILDCIYSCRIPFQFRTAYIAPSSRVFGRGELVVDPALI 164 (717)
Q Consensus 85 li~~i~~~~v~Pl~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~Di~f~~Di~l~F~tay~~~~s~~~~~G~lV~d~~~I 164 (717)
.+.++|++++++..+.|+-+ ...+...|..+++++|++|++||++++||||+++ |.+|.|..+.
T Consensus 4 s~~vLYN~~~li~r~~F~di---------~~~y~~~wl~ld~~~D~vyllDi~v~~R~gyleq-------GllV~~~~Kl 67 (536)
T KOG0500|consen 4 SLGVLYNMIVLIVRAAFDDI---------QSSYLENWLPLDYLFDFVYLLDIIVRSRTGYLEQ-------GLLVKDTSKL 67 (536)
T ss_pred EEehHHHHHHHHHHHHHHHH---------hHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHhc-------CeeehhhHHH
Confidence 35678899998887665544 3345568899999999999999999999999985 9999999999
Q ss_pred HHHHHhh-hhHHHhhhccchhhhhhheeecCccchhhhhhhhhhHHHHHhHhhhhhhhhhhhhhhhhhhhHHHHhhHHHH
Q 005042 165 SRRYFRR-LFLVDFLSVLPIPQLLVSVYLSDTRAKVFSTKEALPLLIILQYVPRILRIFPLISELKKTVGVFVESALGGA 243 (717)
Q Consensus 165 a~rYl~~-~F~iDlls~lPl~~i~~~~~~~~~~~~~~~~~~~Lrli~l~q~l~Rl~ri~~l~~~l~~~~~~~~~~~~~~~ 243 (717)
.+||+++ .|.+|++|++|++.+.++... . .+.| +.||+|++|++..+.++.+........ .
T Consensus 68 ~~hY~~s~~f~lD~l~liP~D~l~~~~~~-----~-----~~~r-------~nRllk~yRl~~F~~rTetrT~~Pn~f-r 129 (536)
T KOG0500|consen 68 RKHYVHSTQFKLDVLSLIPLDLLLFKDGS-----A-----SLER-------LNRLLKIYRLFEFFDRTETRTTYPNAF-R 129 (536)
T ss_pred HHHHHHhhhhhhhhhhhcchhHHhhcCCc-----c-----hHHH-------HHHHHHHHHHHHHHHHhccccCCchHH-H
Confidence 9999988 999999999999999885421 1 1222 456666777777666665322211222 3
Q ss_pred HHHHHHHH-HHHHHHHHHHHHHhHhhhhhhhHHhhcccCCCCcccccccCCCCCCccccccchhhhhcccccCcCCCCCc
Q 005042 244 AYYLLCYI-VCSHIVGAFWYLLAVERNFTCWQQACNQTGRCSHSFLYCHNTNFGGFDDWKQTREHIIDHKCHAMEGNPEF 322 (717)
Q Consensus 244 ~~~lll~~-l~~H~~aC~wy~~~~~~~~~~w~~~c~~~~~c~~~~l~c~~~~~~~~~sW~~~~~~~l~~~c~~~~~~~~f 322 (717)
+.+|+.++ ++.||.||++|+++... +.+.++|++ ++-.++.|
T Consensus 130 i~~lv~~~~ilfHWNaClYf~iS~~~--------------------------g~~~d~wvY-----------~~i~d~~~ 172 (536)
T KOG0500|consen 130 ISKLVHYCLILFHWNACLYFLISKAI--------------------------GFTTDDWVY-----------PKINDPEF 172 (536)
T ss_pred HHHHHHHHHHHHHHhhHHHHhhhHhc--------------------------Ccccccccc-----------CCccCccc
Confidence 45555554 67999999999999631 245666832 11112222
Q ss_pred cchhhhhhhhhhhhcCCCCcchHHHHHHHHHHHHHhhccccCCCCccCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005042 323 NFGIYLKAITYEIHLSGKSGQFLSKLFYCLWFGLQNLSTLGQGLKTSTYIQEIIFSILIGIAGLVLLALLIGNMQTYLTS 402 (717)
Q Consensus 323 ~~giy~~~~~~~v~~~g~~~~~~~~Y~~slywal~tlttvGygd~~~~~~~E~~f~i~i~i~G~~lfa~lIg~~~~~l~~ 402 (717)
.. +. ..++..+|++|+||+..||||+|. .-+|.+..|.+|.|+-.++|+++||.++|++++++.+
T Consensus 173 ~~-----------c~---~~n~~ReY~~S~YWStLTlTTiGe-~P~P~t~~ey~F~I~d~LiGvliFAtIvG~VGsmVtn 237 (536)
T KOG0500|consen 173 AT-----------CD---AGNLTREYLYSLYWSTLTLTTIGE-QPPPVTSSEYAFVIVDTLIGVLIFATIVGNVGSMVTN 237 (536)
T ss_pred cc-----------cc---hhHHHHHHHHHHHHHhhhhhhccC-CCCCCcCchhhHHHHHHHHHHHHHhhhhccHhHHHHh
Confidence 10 00 156899999999999999999994 4568899999999999999999999999999999999
Q ss_pred hhHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHhhhcCCCHHHHHHhCChhHHHHHHHHHHHHHhccCcCCCC
Q 005042 403 LTVRLEEMRIKRRDSEQWMHHRWLPQDLRERVRRYDHFKWLETRGVDEEHLVQNLPKDLRRDIKRHLCLNLVRRVPLFAN 482 (717)
Q Consensus 403 ~~~~~~e~~~k~~~~~~~m~~~~lp~~L~~rV~~y~~y~w~~~~~~de~~ll~~Lp~~Lr~~I~~~l~~~lL~~iplF~~ 482 (717)
+++...||+.+|+.+++||++|++|..|+.||.+||.|.|.+.+-.||+++++.||+.|+.+|+.+++.+.|+++++|+.
T Consensus 238 mna~r~EFq~~mDGiK~YM~~RkV~~~lq~rVikwfdYlwa~~~~~DEeevl~~LP~kL~aeIA~nvh~dTLkkV~iF~~ 317 (536)
T KOG0500|consen 238 MNAARTEFQAKMDGIKQYMRYRKVPKALQTRVIKWFDYLWAHKKIVDEEEVLKLLPDKLKAEIAINVHLDTLKKVRIFQD 317 (536)
T ss_pred hhHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhccccccHHHHHHhCCHHHHhHhHHHHHHHHHHhhhHHHh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CcHHHHHHHHhhceeEEecCCcEEEccCCCcceEEEEEeeEEEEEEecCCeeeeeeeeecCCCCeecHHhHhhhcCCCCC
Q 005042 483 MDERLLDAICERLKPSLCTEGTCVVREGDPVVEMLLIIRGSLESVTTDGGRTGFYNRGMLKEGDFCGEELLTWALDPKSV 562 (717)
Q Consensus 483 ls~~~l~~l~~~l~~~~~~~ge~Ii~eGd~~~~myfI~~G~v~v~~~~~g~e~~~~~~~l~~Gd~fGe~~l~~~l~~~~~ 562 (717)
+.+.++.++..++++..|.|||+|++.||.+.+||+|.+|.+++...||+.. ...+++|++|||.++++ +.+..
T Consensus 318 ce~~lL~elVLklk~qvfSPgDyICrKGdvgkEMyIVk~G~L~Vv~dDg~t~----~~~L~~G~~FGEisIln-i~g~~- 391 (536)
T KOG0500|consen 318 CEAGLLVELVLKLKPQVFSPGDYICRKGDVGKEMYIVKEGKLAVVADDGVTV----FVTLKAGSVFGEISILN-IKGNK- 391 (536)
T ss_pred cchhHHHHHHHHhcceeeCCCCeEEecCcccceEEEEEccEEEEEecCCcEE----EEEecCCceeeeeEEEE-EcCcc-
Confidence 9999999999999999999999999999999999999999999998777654 68999999999998854 44433
Q ss_pred CCCCCcccEEEEcceeEEEEEcHHHHHHHHHhcHHHHHHHHHH
Q 005042 563 TNLPLSTRTVRALDEVEAFSLRAEELKFVASQFRRLHSRQVQH 605 (717)
Q Consensus 563 ~n~p~s~~tv~A~t~~el~~L~~~df~~ll~~~P~l~~k~l~~ 605 (717)
+..+|+++|+++..+++++|+++|+.+.+++||+-+..++++
T Consensus 392 -~gNRRtanvrSvGYSDlfvLskdDl~~aL~eYP~a~~~L~~k 433 (536)
T KOG0500|consen 392 -NGNRRTANVRSVGYSDLFVLSKDDLWEALSEYPDARKRLEEK 433 (536)
T ss_pred -cCCcceeeeeeeccceeeEeeHHHHHHHHHhCCHHHHHHHHH
Confidence 334599999999999999999999999999999876555533
No 5
>KOG0499 consensus Cyclic nucleotide-gated cation channel CNCG4 [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=100.00 E-value=2.7e-57 Score=483.38 Aligned_cols=424 Identities=23% Similarity=0.359 Sum_probs=360.2
Q ss_pred CeeecCCC-hHHHHHHHHHHHHHHHHHhhhccccccccccCCccccccccchhHHHHHHHHHHHHHHHHhH-hhhceeeE
Q 005042 67 KIIIDPQD-RSLLFWNRLFVFTCFISVSIDPLFFYLPFFDKENYCLGMDVQLAAAITTFRSILDCIYSCRI-PFQFRTAY 144 (717)
Q Consensus 67 ~~ii~P~s-~~~~~W~~~~li~~i~~~~v~Pl~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~Di~f~~Di-~l~F~tay 144 (717)
...|||++ ++...|-.++.++..++++++|+...||+....+ ...|.+.++++|++|++|| +++=|.-|
T Consensus 217 ~~sidp~~~r~Y~~WL~lVtlaf~~N~w~IPlR~sfPyQT~dN---------~~~Wli~Dy~cDiIYllDmlf~q~Rl~f 287 (815)
T KOG0499|consen 217 PNSIDPYTDRLYLLWLLLVTLAFNWNCWFIPLRLSFPYQTADN---------IHYWLIADYICDIIYLLDMLFIQPRLQF 287 (815)
T ss_pred CcccCcccchHHHHHHHHHHHHHhhceeEEeeeccCCcccccc---------chhhhhHHHHhhHHHHHHHhhhhhhhee
Confidence 45799998 9999999999999999999999999999986543 3478999999999999999 56667777
Q ss_pred EcCCCcccCCCeEeeCHHHHHHHHHhh-hhHHHhhhccchhhhhhheeecCccchhhhhhhhhhHHHHHhHhhhhhhhhh
Q 005042 145 IAPSSRVFGRGELVVDPALISRRYFRR-LFLVDFLSVLPIPQLLVSVYLSDTRAKVFSTKEALPLLIILQYVPRILRIFP 223 (717)
Q Consensus 145 ~~~~s~~~~~G~lV~d~~~Ia~rYl~~-~F~iDlls~lPl~~i~~~~~~~~~~~~~~~~~~~Lrli~l~q~l~Rl~ri~~ 223 (717)
+- .|.+|.|.+...+||+++ .|-+|++|+||+++++..+.. +-++| ++|++++-.
T Consensus 288 vr-------gG~~ik~kndtrk~Yl~sr~FklDllsiLPldllY~~~G~----------~p~wR-------~~R~lK~~s 343 (815)
T KOG0499|consen 288 VR-------GGDIIKDKNDTRKHYLTSRKFKLDLLSILPLDLLYLFFGF----------NPMWR-------ANRMLKYTS 343 (815)
T ss_pred ee-------CceEEEechHHHHHHHHhhhhhhhHHhhhhHHHHHHHhcc----------chhhh-------hhhHHHHHH
Confidence 65 399999999999999998 999999999999998875432 22333 344444433
Q ss_pred hhhhhhhhhhHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhhhhHHhhcccCCCCcccccccCCCCCCcccccc
Q 005042 224 LISELKKTVGVFVESALGGAAYYLLCYIVCSHIVGAFWYLLAVERNFTCWQQACNQTGRCSHSFLYCHNTNFGGFDDWKQ 303 (717)
Q Consensus 224 l~~~l~~~~~~~~~~~~~~~~~~lll~~l~~H~~aC~wy~~~~~~~~~~w~~~c~~~~~c~~~~l~c~~~~~~~~~sW~~ 303 (717)
++........++.+....+.+..+-..++++|+.+|+||+.+..+ +.+.+.|+
T Consensus 344 F~e~~~~Le~i~s~~y~~RV~rT~~YmlyilHinacvYY~~Sayq--------------------------glG~~rWV- 396 (815)
T KOG0499|consen 344 FFEFNHHLESIMSKAYIYRVIRTTGYLLYILHINACVYYWASAYQ--------------------------GLGTTRWV- 396 (815)
T ss_pred HHHHHHHHHHHhcchhhhhhHHHHHHHHHHHhhhHHHHHHHHhhc--------------------------ccccceeE-
Confidence 333222222222222222333333333467999999999988532 35677893
Q ss_pred chhhhhcccccCcCCCCCccchhhhhhhhhhhhcCCCCcchHHHHHHHHHHHHHhhccccCCCCccCchhHHHHHHHHHH
Q 005042 304 TREHIIDHKCHAMEGNPEFNFGIYLKAITYEIHLSGKSGQFLSKLFYCLWFGLQNLSTLGQGLKTSTYIQEIIFSILIGI 383 (717)
Q Consensus 304 ~~~~~l~~~c~~~~~~~~f~~giy~~~~~~~v~~~g~~~~~~~~Y~~slywal~tlttvGygd~~~~~~~E~~f~i~i~i 383 (717)
. +.-...|++|+|||+.|++|+| |+-.|++..|++|..+--+
T Consensus 397 ------y-------------------------------dg~Gn~YiRCyyfa~kt~~tiG-~~P~P~~~~E~Vf~~~~w~ 438 (815)
T KOG0499|consen 397 ------Y-------------------------------DGEGNEYIRCYYFAVKTLITIG-GLPEPQTLFEIVFQLLNWF 438 (815)
T ss_pred ------E-------------------------------cCCCCceeeehhhHHHHHHHhc-CCCCcchHHHHHHHHHHHH
Confidence 1 1223579999999999999999 8899999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHhhhcCCCHHHHHHhCChhHHH
Q 005042 384 AGLVLLALLIGNMQTYLTSLTVRLEEMRIKRRDSEQWMHHRWLPQDLRERVRRYDHFKWLETRGVDEEHLVQNLPKDLRR 463 (717)
Q Consensus 384 ~G~~lfa~lIg~~~~~l~~~~~~~~e~~~k~~~~~~~m~~~~lp~~L~~rV~~y~~y~w~~~~~~de~~ll~~Lp~~Lr~ 463 (717)
.|+++||.+||.|-.++...+..+++||..|+++-.||+..+||.+.|.||+.+|+|.|..++..||.+++..||..|+.
T Consensus 439 mGVFvFslliGQmRDvi~aAt~nq~~fr~~mD~tl~ym~~~~i~kevqnRVr~WyeyTW~sQr~LDEs~ll~~LP~klq~ 518 (815)
T KOG0499|consen 439 MGVFVFSLLIGQMRDVIGAATANQNYFRACMDDTLAYMNNYSIPKEVQNRVRTWYEYTWDSQRMLDESDLLKTLPTKLQL 518 (815)
T ss_pred HHHHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHhhhhhhccccHHHHHHhcchhhee
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhccCcCCCCCcHHHHHHHHhhceeEEecCCcEEEccCCCcceEEEEEeeEEEEEEecCCeeeeeeeeecC
Q 005042 464 DIKRHLCLNLVRRVPLFANMDERLLDAICERLKPSLCTEGTCVVREGDPVVEMLLIIRGSLESVTTDGGRTGFYNRGMLK 543 (717)
Q Consensus 464 ~I~~~l~~~lL~~iplF~~ls~~~l~~l~~~l~~~~~~~ge~Ii~eGd~~~~myfI~~G~v~v~~~~~g~e~~~~~~~l~ 543 (717)
+++...+-..+.++.+|++++.+.+..++-+++.+.|-|||+|++.||.+.+||+|..|.|.+....+|... +..|+
T Consensus 519 dlAi~V~y~~lSKVqLFq~Cdr~mirDmllrLRsV~yLPgDfVCkKGeiGkEMYIIk~GqvQVlGGp~~~~V---l~tL~ 595 (815)
T KOG0499|consen 519 DLAIDVNYSILSKVQLFQGCDRQMIRDMLLRLRSVLYLPGDFVCKKGEIGKEMYIIKHGQVQVLGGPDGTKV---LVTLK 595 (815)
T ss_pred eeeEEeehhhhhHHHHhhhhHHHHHHHHHHHhhceeecCCceeeecccccceeEEeecceEEEecCCCCCEE---EEEec
Confidence 999999999999999999999999999999999999999999999999999999999999999976666543 79999
Q ss_pred CCCeecHHhHhhhcCCCCCCCCCCcccEEEEcceeEEEEEcHHHHHHHHHhcHH
Q 005042 544 EGDFCGEELLTWALDPKSVTNLPLSTRTVRALDEVEAFSLRAEELKFVASQFRR 597 (717)
Q Consensus 544 ~Gd~fGe~~l~~~l~~~~~~n~p~s~~tv~A~t~~el~~L~~~df~~ll~~~P~ 597 (717)
+|++|||++++ |..+. | +|+++|+|...|.++.|+++|+.+++..||+
T Consensus 596 ~GsVFGEISLL-aigG~---n--RRTAnV~a~Gf~nLfvL~KkdLneil~~YP~ 643 (815)
T KOG0499|consen 596 AGSVFGEISLL-AIGGG---N--RRTANVVAHGFANLFVLDKKDLNEILVHYPD 643 (815)
T ss_pred ccceeeeeeee-eecCC---C--ccchhhhhcccceeeEecHhHHHHHHHhCcc
Confidence 99999999883 23322 2 4899999999999999999999999999995
No 6
>PRK09392 ftrB transcriptional activator FtrB; Provisional
Probab=99.59 E-value=3.7e-14 Score=146.06 Aligned_cols=130 Identities=18% Similarity=0.213 Sum_probs=116.5
Q ss_pred HHHhccCcCCCCCcHHHHHHHHhhceeEEecCCcEEEccCCCcceEEEEEeeEEEEEEecCCeeeeeeeeecCCCCeecH
Q 005042 471 LNLVRRVPLFANMDERLLDAICERLKPSLCTEGTCVVREGDPVVEMLLIIRGSLESVTTDGGRTGFYNRGMLKEGDFCGE 550 (717)
Q Consensus 471 ~~lL~~iplF~~ls~~~l~~l~~~l~~~~~~~ge~Ii~eGd~~~~myfI~~G~v~v~~~~~g~e~~~~~~~l~~Gd~fGe 550 (717)
.+.++.+|+|..++++.++.++...+.+.|++|+.|+++||+++.+|+|.+|.++++...+|++.+ +..+.+|++||+
T Consensus 6 ~~~l~~~~~f~~L~~~~~~~l~~~~~~~~~~~ge~l~~~g~~~~~~~~v~~G~v~~~~~~~~~~~~--i~~~~~g~~~g~ 83 (236)
T PRK09392 6 LIRLRNLPLFADMADATFERLMRGAFLQRFPPGTMLITEGEPADFLFVVLDGLVELSASSQDRETT--LAILRPVSTFIL 83 (236)
T ss_pred HHHHhcCccccCCCHHHHHHHHhhcceeecCCCCEEEeCCCccceEEEEEeCEEEEEEcCCCceEE--EEEeCCCchhhh
Confidence 467899999999999999999999999999999999999999999999999999999766777666 799999999999
Q ss_pred HhHhhhcCCCCCCCCCCcccEEEEcceeEEEEEcHHHHHHHHHhcHHHHHHHHHHHHHhhh
Q 005042 551 ELLTWALDPKSVTNLPLSTRTVRALDEVEAFSLRAEELKFVASQFRRLHSRQVQHTFRFYS 611 (717)
Q Consensus 551 ~~l~~~l~~~~~~n~p~s~~tv~A~t~~el~~L~~~df~~ll~~~P~l~~k~l~~~~r~~s 611 (717)
.++ +.+.+ +.++++|+++|+++.|++++|.+++.++|.+....++...+.+.
T Consensus 84 ~~~---~~~~~------~~~~~~A~~~~~~~~i~~~~~~~l~~~~p~l~~~~~~~l~~~~~ 135 (236)
T PRK09392 84 AAV---VLDAP------YLMSARTLTRSRVLMIPAELVREAMSEDPGFMRAVVFELAGCYR 135 (236)
T ss_pred HHH---hCCCC------CceEEEEcCceEEEEEeHHHHHHHHHHCHHHHHHHHHHHHHHHH
Confidence 987 66666 88999999999999999999999999999987777666555443
No 7
>KOG3713 consensus Voltage-gated K+ channel KCNB/KCNC [Inorganic ion transport and metabolism]
Probab=99.48 E-value=1.1e-12 Score=142.02 Aligned_cols=191 Identities=20% Similarity=0.336 Sum_probs=117.8
Q ss_pred HHHHHHHHHHHHHHHhHhhhceeeEEcCCCcccCCCeEeeCHHHHHHHHHhh-hhHHHhhhccchhhhhhheeecCccch
Q 005042 120 AITTFRSILDCIYSCRIPFQFRTAYIAPSSRVFGRGELVVDPALISRRYFRR-LFLVDFLSVLPIPQLLVSVYLSDTRAK 198 (717)
Q Consensus 120 ~~~~~~~~~Di~f~~Di~l~F~tay~~~~s~~~~~G~lV~d~~~Ia~rYl~~-~F~iDlls~lPl~~i~~~~~~~~~~~~ 198 (717)
.+.+++.++-++|-++++++|-.+ |+ ..+++|+ -=+||++|++||++=+........+..
T Consensus 241 ~l~~vE~vCi~WFT~E~llR~~~~---P~----------------k~~F~k~pLNIIDllAIlPFYielll~~~~~~~~~ 301 (477)
T KOG3713|consen 241 ILTYVETVCIAWFTFEYLLRFLVA---PN----------------KLEFFKSPLNIIDLLAILPFYLELLLTLFGGESLK 301 (477)
T ss_pred chHHHHHHHHHHHHHHHHHHHHcC---ch----------------HHHHHhCcchHHHHHHHHHHHHHHHHHHhccchHH
Confidence 577899999999999999999754 32 3456665 459999999999875443222111111
Q ss_pred hh-hhhhhhhHHHHHhHhhhhhhhhhhhhhhhhhhhHHHH--h--hHHHHHHHHHHHH-HHHHHHHHHHHHHhHhhhhhh
Q 005042 199 VF-STKEALPLLIILQYVPRILRIFPLISELKKTVGVFVE--S--ALGGAAYYLLCYI-VCSHIVGAFWYLLAVERNFTC 272 (717)
Q Consensus 199 ~~-~~~~~Lrli~l~q~l~Rl~ri~~l~~~l~~~~~~~~~--~--~~~~~~~~lll~~-l~~H~~aC~wy~~~~~~~~~~ 272 (717)
.+ +...++|++| +.|++|+++|.+. .+|.-+- | +-+.-+..|++|+ +.+-+++.+-|++-.++
T Consensus 302 ~l~~~~~vvrvlR----~lRI~RI~KLaRh---S~GLr~lg~Tlr~S~~ElglLllfL~~GI~iFStlvY~~Ek~~---- 370 (477)
T KOG3713|consen 302 ELENAGLVVRVLR----VLRILRIFKLARH---STGLRTLGLTLRRSYRELGLLLLFLAVGIVIFSTLVYFAEKDE---- 370 (477)
T ss_pred HHhhhhhhHHHHH----HHHHHHHHHHHhh---hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcC----
Confidence 11 1112333322 3445555544442 2222111 1 1111233344443 44667777777653211
Q ss_pred hHHhhcccCCCCcccccccCCCCCCccccccchhhhhcccccCcCCCCCccchhhhhhhhhhhhcCCCCcchHHHHHHHH
Q 005042 273 WQQACNQTGRCSHSFLYCHNTNFGGFDDWKQTREHIIDHKCHAMEGNPEFNFGIYLKAITYEIHLSGKSGQFLSKLFYCL 352 (717)
Q Consensus 273 w~~~c~~~~~c~~~~l~c~~~~~~~~~sW~~~~~~~l~~~c~~~~~~~~f~~giy~~~~~~~v~~~g~~~~~~~~Y~~sl 352 (717)
.+++| ..-=.|+
T Consensus 371 ---------------------------------------------~~~~F-----------------------tSIPa~~ 382 (477)
T KOG3713|consen 371 ---------------------------------------------PDTKF-----------------------TSIPAGF 382 (477)
T ss_pred ---------------------------------------------CCCCC-----------------------ccccchh
Confidence 01111 1112489
Q ss_pred HHHHHhhccccCCCCccCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHH
Q 005042 353 WFGLQNLSTLGQGLKTSTYIQEIIFSILIGIAGLVLLALLIGNMQTYLTSLTVRLE 408 (717)
Q Consensus 353 ywal~tlttvGygd~~~~~~~E~~f~i~i~i~G~~lfa~lIg~~~~~l~~~~~~~~ 408 (717)
|||+.|||||||||.+|.|...++++...++.|+++.|+-|..|-+-+.......+
T Consensus 383 WWaiVTMTTVGYGDm~P~T~~Gklvas~cil~GVLvlAlPItiIv~nF~~~y~~~k 438 (477)
T KOG3713|consen 383 WWAVVTMTTVGYGDMVPVTVLGKLVASLCILCGVLVLALPITIIVNNFSMYYSELK 438 (477)
T ss_pred heeeEEEeeecccCccccccchHHHHHHHHHHhHHHhhcchHhHhhhHHHHHHHHH
Confidence 99999999999999999999999999999999999999988777666655444433
No 8
>PRK11753 DNA-binding transcriptional dual regulator Crp; Provisional
Probab=99.45 E-value=3.9e-12 Score=128.46 Aligned_cols=118 Identities=15% Similarity=0.215 Sum_probs=101.4
Q ss_pred CCCcHHHHHHHHhhceeEEecCCcEEEccCCCcceEEEEEeeEEEEEEe-cCCeeeeeeeeecCCCCeecHHhHhhhcCC
Q 005042 481 ANMDERLLDAICERLKPSLCTEGTCVVREGDPVVEMLLIIRGSLESVTT-DGGRTGFYNRGMLKEGDFCGEELLTWALDP 559 (717)
Q Consensus 481 ~~ls~~~l~~l~~~l~~~~~~~ge~Ii~eGd~~~~myfI~~G~v~v~~~-~~g~e~~~~~~~l~~Gd~fGe~~l~~~l~~ 559 (717)
+.+|++.++.++..++.+.|++|+.|+.+|++++.+|||.+|.++++.. .+|++.+ +..+++||+||+..+ +.+
T Consensus 6 ~~~~~~~~~~l~~~~~~~~~~kg~~l~~~g~~~~~~y~V~~G~v~~~~~~~~g~~~~--~~~~~~g~~~g~~~~---~~~ 80 (211)
T PRK11753 6 KPQTDPTLEWFLSHCHIHKYPAKSTLIHAGEKAETLYYIVKGSVAVLIKDEEGKEMI--LSYLNQGDFIGELGL---FEE 80 (211)
T ss_pred CCCCHHHHHHHHhhCeEEEeCCCCEEEeCCCCCCeEEEEEeCEEEEEEECCCCCEEE--EEEcCCCCEEeehhh---ccC
Confidence 4689999999999999999999999999999999999999999999864 4567666 789999999999977 433
Q ss_pred CCCCCCCCcccEEEEcceeEEEEEcHHHHHHHHHhcHHHHHHHHHHHHH
Q 005042 560 KSVTNLPLSTRTVRALDEVEAFSLRAEELKFVASQFRRLHSRQVQHTFR 608 (717)
Q Consensus 560 ~~~~n~p~s~~tv~A~t~~el~~L~~~df~~ll~~~P~l~~k~l~~~~r 608 (717)
.+ ++..+++|.++|+++.|++++|.+++.++|++....++...+
T Consensus 81 ~~-----~~~~~~~a~~~~~v~~i~~~~~~~l~~~~p~~~~~~~~~~~~ 124 (211)
T PRK11753 81 GQ-----ERSAWVRAKTACEVAEISYKKFRQLIQVNPDILMALSAQMAR 124 (211)
T ss_pred CC-----CceEEEEEcCcEEEEEEcHHHHHHHHHHCHHHHHHHHHHHHH
Confidence 21 267899999999999999999999999999886655554433
No 9
>PF00520 Ion_trans: Ion transport protein calcium channel signature potassium channel signature sodium channel signature; InterPro: IPR005821 This group of proteins is found in sodium, potassium, and calcium ion channels proteins. The proteins have 6 transmembrane helices in which the last two helices flank a loop which determines ion selectivity. In some Na channels proteins the domain is repeated four times, whereas in others (e.g. K channels) the protein forms a tetramer in the membrane. A bacterial structure of the protein is known for the last two helices but is not included in the Pfam family due to it lacking the first four helices. ; GO: 0005216 ion channel activity, 0006811 ion transport, 0055085 transmembrane transport, 0016020 membrane; PDB: 3VMX_B 1QG9_A 1UJL_A 2LE7_A 2LCM_A 3A2A_A 3RW0_A 4EKW_A 3RVY_B 3RVZ_B ....
Probab=99.43 E-value=7.6e-13 Score=131.06 Aligned_cols=193 Identities=21% Similarity=0.328 Sum_probs=124.5
Q ss_pred HHHHHHHHHHHHhHhhhceeeEEcCCCcccCCCeEeeCHHHHHHHHHhh-hhHHHhhhccchhhhhhheeecCccchhhh
Q 005042 123 TFRSILDCIYSCRIPFQFRTAYIAPSSRVFGRGELVVDPALISRRYFRR-LFLVDFLSVLPIPQLLVSVYLSDTRAKVFS 201 (717)
Q Consensus 123 ~~~~~~Di~f~~Di~l~F~tay~~~~s~~~~~G~lV~d~~~Ia~rYl~~-~F~iDlls~lPl~~i~~~~~~~~~~~~~~~ 201 (717)
+++.+.+++|.+|+++++.+... . +++|+++ |.++|+++++|....+....... .+.
T Consensus 1 ~~~~~~~~~f~~e~~l~~~~~~~-----------~-------~~~y~~~~~~~~d~~~~~~~~~~~~~~~~~~--~~~-- 58 (200)
T PF00520_consen 1 ILEIIFDVIFILEIVLRFFALGF-----------K-------RRRYFRSWWNWFDFISVIPSIVSVILRSYGS--ASA-- 58 (200)
T ss_dssp HHHHHHHHHHHHHHHHHHHTCCC-----------G--------GCCCCSHHHHHHHHHHHHHCCHHCCHCSS----HH--
T ss_pred CChHHHHHHHHHHHHHHHHHhcc-----------H-------HHHHhcChhhccccccccccccccccccccc--ccc--
Confidence 37889999999999999986532 1 6789988 77899999999966554322211 000
Q ss_pred hhhhhhHHHHHhHhhhhhhhhhhhhhhhhhhhHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhhhhHHhhcccC
Q 005042 202 TKEALPLLIILQYVPRILRIFPLISELKKTVGVFVESALGGAAYYLLCYIVCSHIVGAFWYLLAVERNFTCWQQACNQTG 281 (717)
Q Consensus 202 ~~~~Lrli~l~q~l~Rl~ri~~l~~~l~~~~~~~~~~~~~~~~~~lll~~l~~H~~aC~wy~~~~~~~~~~w~~~c~~~~ 281 (717)
...+++.++++ +.|++|+.+..+.+.+...... .........+++++++.|+.||+++.+.......|+.
T Consensus 59 -~~~~~~~~~l~-~~R~l~~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~~~~~~~~a~~~~~lf~~~~~~~~~------- 128 (200)
T PF00520_consen 59 -QSLLRIFRLLR-LLRLLRLLRRFRSLRRLLRALI-RSFPDLFKFILLLFIVLLFFACIGYQLFGGSDNSCCD------- 128 (200)
T ss_dssp -CHCHHHHHHHH-HHHHHHHHHTTTSHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTS------------
T ss_pred -cceEEEEEeec-cccccccccccccccccccccc-cccccccccccccccccccccchhheecccccccccc-------
Confidence 12333333332 3355555555555444433322 2233445556667788999999999887543221110
Q ss_pred CCCcccccccCCCCCCccccccchhhhhcccccCcCCCCCccchhhhhhhhhhhhcCCCCcchHHHHHHHHHHHHHhhcc
Q 005042 282 RCSHSFLYCHNTNFGGFDDWKQTREHIIDHKCHAMEGNPEFNFGIYLKAITYEIHLSGKSGQFLSKLFYCLWFGLQNLST 361 (717)
Q Consensus 282 ~c~~~~l~c~~~~~~~~~sW~~~~~~~l~~~c~~~~~~~~f~~giy~~~~~~~v~~~g~~~~~~~~Y~~slywal~tltt 361 (717)
. . + ++.++. . ..+.++.|..|+||.++++|+
T Consensus 129 ---~------------~--~--------------~~~~~~--------------~----~~~~f~~~~~s~~~~~~~~t~ 159 (200)
T PF00520_consen 129 ---P------------T--W--------------DSENDI--------------Y----GYENFDSFGESLYWLFQTMTG 159 (200)
T ss_dssp -------------------S--------------S----S--------------S----THHHHSSHHHHHHHHHHHHTT
T ss_pred ---c------------c--c--------------cccccc--------------c----ccccccccccccccccccccc
Confidence 0 0 0 000000 0 145577899999999999999
Q ss_pred ccCCCCccC-----chhHHHHH-HHHHHHHHHHHHHHHHHH
Q 005042 362 LGQGLKTST-----YIQEIIFS-ILIGIAGLVLLALLIGNM 396 (717)
Q Consensus 362 vGygd~~~~-----~~~E~~f~-i~i~i~G~~lfa~lIg~~ 396 (717)
.|+|+..+. +..+.++. +++.+.+.++++++||+|
T Consensus 160 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~nlliavi 200 (200)
T PF00520_consen 160 EGWGDVMPSCMSARSWLAVIFFISFIIIVSILLLNLLIAVI 200 (200)
T ss_dssp TTCCCCHHHHHHTTSTTHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCccccccccccccchhHhHHhhhhhhhHHHHHHHHHHhcC
Confidence 999999987 88999988 777777779999999986
No 10
>cd00038 CAP_ED effector domain of the CAP family of transcription factors; members include CAP (or cAMP receptor protein (CRP)), which binds cAMP, FNR (fumarate and nitrate reduction), which uses an iron-sulfur cluster to sense oxygen) and CooA, a heme containing CO sensor. In all cases binding of the effector leads to conformational changes and the ability to activate transcription. Cyclic nucleotide-binding domain similar to CAP are also present in cAMP- and cGMP-dependent protein kinases (cAPK and cGPK) and vertebrate cyclic nucleotide-gated ion-channels. Cyclic nucleotide-monophosphate binding domain; proteins that bind cyclic nucleotides (cAMP or cGMP) share a structural domain of about 120 residues; the best studied is the prokaryotic catabolite gene activator, CAP, where such a domain is known to be composed of three alpha-helices and a distinctive eight-stranded, antiparallel beta-barrel structure; three conserved glycine residues are thought to be essential for maintenance of
Probab=99.42 E-value=2.7e-12 Score=114.79 Aligned_cols=111 Identities=29% Similarity=0.545 Sum_probs=98.3
Q ss_pred CCCCCcHHHHHHHHhhceeEEecCCcEEEccCCCcceEEEEEeeEEEEEEec-CCeeeeeeeeecCCCCeecHHhHhhhc
Q 005042 479 LFANMDERLLDAICERLKPSLCTEGTCVVREGDPVVEMLLIIRGSLESVTTD-GGRTGFYNRGMLKEGDFCGEELLTWAL 557 (717)
Q Consensus 479 lF~~ls~~~l~~l~~~l~~~~~~~ge~Ii~eGd~~~~myfI~~G~v~v~~~~-~g~e~~~~~~~l~~Gd~fGe~~l~~~l 557 (717)
+|..++++.+..++..++.+.+.+|+.|+.+|++.+.+|+|.+|.++++..+ +|++.+ +..+.+|++||+..+ +
T Consensus 1 ~f~~l~~~~~~~l~~~~~~~~~~~g~~l~~~~~~~~~~~~i~~G~v~~~~~~~~g~~~~--~~~~~~g~~~g~~~~---~ 75 (115)
T cd00038 1 LFSGLDDEELEELADALEERRFPAGEVIIRQGDPADSLYIVLSGSVEVYKLDEDGREQI--VGFLGPGDLFGELAL---L 75 (115)
T ss_pred CcccCCHHHHHHHHhhceeeeeCCCCEEEcCCCCCCeEEEEEeCEEEEEEECCCCcEEE--EEecCCccCcChHHH---h
Confidence 4788999999999999999999999999999999999999999999988644 455555 789999999999977 4
Q ss_pred CCCCCCCCCCcccEEEEcceeEEEEEcHHHHHHHHHhcHHHHH
Q 005042 558 DPKSVTNLPLSTRTVRALDEVEAFSLRAEELKFVASQFRRLHS 600 (717)
Q Consensus 558 ~~~~~~n~p~s~~tv~A~t~~el~~L~~~df~~ll~~~P~l~~ 600 (717)
...+ +..+++|.++|+++.|+.++|.+++.++|.+..
T Consensus 76 ~~~~------~~~~~~a~~~~~~~~i~~~~~~~~~~~~~~~~~ 112 (115)
T cd00038 76 GNGP------RSATVRALTDSELLVLPRSDFRRLLQEYPELAR 112 (115)
T ss_pred cCCC------CCceEEEcCceEEEEEeHHHHHHHHHHCcHhHH
Confidence 4444 788999999999999999999999999997644
No 11
>PRK11161 fumarate/nitrate reduction transcriptional regulator; Provisional
Probab=99.39 E-value=6.6e-12 Score=129.19 Aligned_cols=123 Identities=16% Similarity=0.271 Sum_probs=102.6
Q ss_pred hccCcCCCCCcHHHHHHHHhhcee-EEecCCcEEEccCCCcceEEEEEeeEEEEEEe-cCCeeeeeeeeecCCCCeecHH
Q 005042 474 VRRVPLFANMDERLLDAICERLKP-SLCTEGTCVVREGDPVVEMLLIIRGSLESVTT-DGGRTGFYNRGMLKEGDFCGEE 551 (717)
Q Consensus 474 L~~iplF~~ls~~~l~~l~~~l~~-~~~~~ge~Ii~eGd~~~~myfI~~G~v~v~~~-~~g~e~~~~~~~l~~Gd~fGe~ 551 (717)
+++.+.|..+++++++.+...... ..|++|+.|+++||+++.+|+|.+|.|+++.. .+|++.+ +.++.+||+||+.
T Consensus 15 ~~~~~~~~~l~~~~l~~L~~~~~~~~~~~kge~l~~~Gd~~~~ly~v~~G~v~~~~~~~~G~e~i--~~~~~~gd~~g~~ 92 (235)
T PRK11161 15 ISQLCIPFTLNEHELDQLDNIIERKKPIQKGQTLFKAGDELKSLYAIRSGTIKSYTITEQGDEQI--TGFHLAGDLVGFD 92 (235)
T ss_pred ccccccccCCCHHHHHHHHHhhhhceeecCCCEeECCCCCcceEEEEeeceEEEEEECCCCCEEE--EEeccCCceeccc
Confidence 455556667999999999988864 67999999999999999999999999999975 4577766 7888999999987
Q ss_pred hHhhhcCCCCCCCCCCcccEEEEcceeEEEEEcHHHHHHHHHhcHHHHHHHHHHHHH
Q 005042 552 LLTWALDPKSVTNLPLSTRTVRALDEVEAFSLRAEELKFVASQFRRLHSRQVQHTFR 608 (717)
Q Consensus 552 ~l~~~l~~~~~~n~p~s~~tv~A~t~~el~~L~~~df~~ll~~~P~l~~k~l~~~~r 608 (717)
++ ..+. +..+++|+++|+++.|++++|.+++.++|++....++.+.+
T Consensus 93 ~~---~~~~-------~~~~~~a~~~~~i~~ip~~~f~~l~~~~p~~~~~~~~~~~~ 139 (235)
T PRK11161 93 AI---GSGQ-------HPSFAQALETSMVCEIPFETLDDLSGKMPKLRQQIMRLMSG 139 (235)
T ss_pred cc---cCCC-------CcceEEEeccEEEEEEEHHHHHHHHHHChHHHHHHHHHHHH
Confidence 55 3222 44689999999999999999999999999887766655444
No 12
>smart00100 cNMP Cyclic nucleotide-monophosphate binding domain. Catabolite gene activator protein (CAP) is a prokaryotic homologue of eukaryotic cNMP-binding domains, present in ion channels, and cNMP-dependent kinases.
Probab=99.36 E-value=1.8e-11 Score=109.87 Aligned_cols=116 Identities=23% Similarity=0.372 Sum_probs=98.8
Q ss_pred CCCCCcHHHHHHHHhhceeEEecCCcEEEccCCCcceEEEEEeeEEEEEEec-CCeeeeeeeeecCCCCeecHHhHhhhc
Q 005042 479 LFANMDERLLDAICERLKPSLCTEGTCVVREGDPVVEMLLIIRGSLESVTTD-GGRTGFYNRGMLKEGDFCGEELLTWAL 557 (717)
Q Consensus 479 lF~~ls~~~l~~l~~~l~~~~~~~ge~Ii~eGd~~~~myfI~~G~v~v~~~~-~g~e~~~~~~~l~~Gd~fGe~~l~~~l 557 (717)
+|.+++++.++.++..++.+.+++|++|+++|++.+.+|||.+|.++++..+ +|++.. +..+.+|++||+..++. .
T Consensus 1 ~f~~l~~~~~~~l~~~~~~~~~~~g~~l~~~g~~~~~~y~v~~G~v~~~~~~~~g~~~~--~~~~~~g~~~g~~~~~~-~ 77 (120)
T smart00100 1 LFKNLDAEELRELADALEPVRYPAGEVIIRQGDVGDSFYIILSGEVRVYKVLEDGREQI--LGILGPGDFFGELALLT-N 77 (120)
T ss_pred CcCCCCHHHHHHHHHhceEEEeCCCCEEEeCCCcCCcEEEEEeeEEEEEEECCCCceEE--EEeecCCceechhhhcc-C
Confidence 4788999999999999999999999999999999999999999999998753 455544 78999999999997720 1
Q ss_pred CCCCCCCCCCcccEEEEcceeEEEEEcHHHHHHHHHhcHHHHHHHH
Q 005042 558 DPKSVTNLPLSTRTVRALDEVEAFSLRAEELKFVASQFRRLHSRQV 603 (717)
Q Consensus 558 ~~~~~~n~p~s~~tv~A~t~~el~~L~~~df~~ll~~~P~l~~k~l 603 (717)
.+.+ +..+++|.++|+++.++.+++.....++|.+..+.+
T Consensus 78 ~~~~------~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~ 117 (120)
T smart00100 78 SRRA------ASATAVALELATLLRIDFRDFLQLLQENPQLLLELL 117 (120)
T ss_pred CCcc------cceEEEEEeeEEEEccCHHHHHHHHHHhHHHHHHHH
Confidence 2233 778999999999999999999999999997654443
No 13
>PRK10402 DNA-binding transcriptional activator YeiL; Provisional
Probab=99.35 E-value=6.2e-12 Score=128.80 Aligned_cols=109 Identities=16% Similarity=0.191 Sum_probs=94.2
Q ss_pred HHHHHhhceeEEecCCcEEEccCCCcceEEEEEeeEEEEEEe-cCCeeeeeeeeecCCCCeecHHhHhhhcCCCCCCCCC
Q 005042 488 LDAICERLKPSLCTEGTCVVREGDPVVEMLLIIRGSLESVTT-DGGRTGFYNRGMLKEGDFCGEELLTWALDPKSVTNLP 566 (717)
Q Consensus 488 l~~l~~~l~~~~~~~ge~Ii~eGd~~~~myfI~~G~v~v~~~-~~g~e~~~~~~~l~~Gd~fGe~~l~~~l~~~~~~n~p 566 (717)
..++....+.+.|++|+.|+++||+++.+|||.+|.|+++.. .+|++.+ +..+.||++||+.++ +.+.+
T Consensus 24 ~~~i~~~~~~~~~~kge~l~~~G~~~~~~y~V~~G~v~v~~~~~~G~e~~--~~~~~~g~~~G~~~~---~~~~~----- 93 (226)
T PRK10402 24 SFDVSADTELFHFLAREYIVQEGQQPSYLFYLTRGRAKLYATLANGKVSL--IDFFAAPCFIGEIEL---IDKDH----- 93 (226)
T ss_pred CHHHHhhhhheeeCCCCEEEcCCCCCceEEEEEeCEEEEEEECCCCCEee--eeecCCCCeEEeehh---hcCCC-----
Confidence 345777888999999999999999999999999999999864 4677766 789999999999987 55555
Q ss_pred CcccEEEEcceeEEEEEcHHHHHHHHHhcHHHHHHHHHHHH
Q 005042 567 LSTRTVRALDEVEAFSLRAEELKFVASQFRRLHSRQVQHTF 607 (717)
Q Consensus 567 ~s~~tv~A~t~~el~~L~~~df~~ll~~~P~l~~k~l~~~~ 607 (717)
++.+++|+++|+++.+++++|.+++.++|.+....++...
T Consensus 94 -~~~~~~A~~~~~i~~i~~~~~~~ll~~~p~~~~~~~~~l~ 133 (226)
T PRK10402 94 -ETKAVQAIEECWCLALPMKDCRPLLLNDALFLRKLCKFLS 133 (226)
T ss_pred -CCccEEEeccEEEEEEEHHHHHHHHhcCHHHHHHHHHHHH
Confidence 8899999999999999999999999999987666555444
No 14
>PF00027 cNMP_binding: Cyclic nucleotide-binding domain; InterPro: IPR000595 Proteins that bind cyclic nucleotides (cAMP or cGMP) share a structural domain of about 120 residues [, , ]. The best studied of these proteins is the prokaryotic catabolite gene activator (also known as the cAMP receptor protein) (gene crp) where such a domain is known to be composed of three alpha-helices and a distinctive eight-stranded, antiparallel beta-barrel structure. There are six invariant amino acids in this domain, three of which are glycine residues that are thought to be essential for maintenance of the structural integrity of the beta-barrel. cAMP- and cGMP-dependent protein kinases (cAPK and cGPK) contain two tandem copies of the cyclic nucleotide-binding domain. The cAPK's are composed of two different subunits, a catalytic chain and a regulatory chain, which contains both copies of the domain. The cGPK's are single chain enzymes that include the two copies of the domain in their N-terminal section. Vertebrate cyclic nucleotide-gated ion-channels also contain this domain. Two such cations channels have been fully characterised, one is found in rod cells where it plays a role in visual signal transduction.; PDB: 1O7F_A 2BYV_E 3E97_A 3U10_A 2H6B_A 3SHR_A 2OZ6_A 1WGP_A 3LA2_A 3LA3_B ....
Probab=99.34 E-value=6.9e-12 Score=108.19 Aligned_cols=89 Identities=27% Similarity=0.392 Sum_probs=78.6
Q ss_pred EEecCCcEEEccCCCcceEEEEEeeEEEEEEecC-CeeeeeeeeecCCCCeecHHhHhhhcCCCCCCCCCCcccEEEEcc
Q 005042 498 SLCTEGTCVVREGDPVVEMLLIIRGSLESVTTDG-GRTGFYNRGMLKEGDFCGEELLTWALDPKSVTNLPLSTRTVRALD 576 (717)
Q Consensus 498 ~~~~~ge~Ii~eGd~~~~myfI~~G~v~v~~~~~-g~e~~~~~~~l~~Gd~fGe~~l~~~l~~~~~~n~p~s~~tv~A~t 576 (717)
+.|++|++|+++|++++.+|||++|.++++..+. ++..+ +..+.+|++||+..+ +.+.+ +..+++|.+
T Consensus 2 ~~~~~g~~i~~~g~~~~~~~~i~~G~v~~~~~~~~~~~~~--~~~~~~g~~~g~~~~---~~~~~------~~~~~~a~~ 70 (91)
T PF00027_consen 2 KTYKKGEVIYRQGDPCDHIYIILSGEVKVSSINEDGKEQI--IFFLGPGDIFGEIEL---LTGKP------SPFTVIALT 70 (91)
T ss_dssp EEESTTEEEEETTSBESEEEEEEESEEEEEEETTTSEEEE--EEEEETTEEESGHHH---HHTSB------BSSEEEESS
T ss_pred eEECCCCEEEeCCCcCCEEEEEEECceEEEeceecceeee--ecceeeeccccceee---cCCCc------cEEEEEEcc
Confidence 6899999999999999999999999999997655 44444 789999999999987 44444 889999999
Q ss_pred eeEEEEEcHHHHHHHHHhcHH
Q 005042 577 EVEAFSLRAEELKFVASQFRR 597 (717)
Q Consensus 577 ~~el~~L~~~df~~ll~~~P~ 597 (717)
+|+++.|++++|.++++++|+
T Consensus 71 ~~~~~~i~~~~~~~~~~~~p~ 91 (91)
T PF00027_consen 71 DSEVLRIPREDFLQLLQQDPE 91 (91)
T ss_dssp SEEEEEEEHHHHHHHHHHSHH
T ss_pred CEEEEEEeHHHHHHHHHhCcC
Confidence 999999999999999999994
No 15
>COG0664 Crp cAMP-binding proteins - catabolite gene activator and regulatory subunit of cAMP-dependent protein kinases [Signal transduction mechanisms]
Probab=99.30 E-value=8.7e-11 Score=117.83 Aligned_cols=126 Identities=21% Similarity=0.355 Sum_probs=106.2
Q ss_pred ccCcCCCCCcHHHHHHHHhhceeEEecCCcEEEccCCCcceEEEEEeeEEEEEEe-cCCeeeeeeeeecCCCCeecHHhH
Q 005042 475 RRVPLFANMDERLLDAICERLKPSLCTEGTCVVREGDPVVEMLLIIRGSLESVTT-DGGRTGFYNRGMLKEGDFCGEELL 553 (717)
Q Consensus 475 ~~iplF~~ls~~~l~~l~~~l~~~~~~~ge~Ii~eGd~~~~myfI~~G~v~v~~~-~~g~e~~~~~~~l~~Gd~fGe~~l 553 (717)
...+.|..++++....+......+.+++|+.|+++||+++.+|+|.+|.++++.. .+|++.+ +..+++||+||+.++
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~g~~~~~~y~v~~G~v~~~~~~~~G~~~~--~~~~~~g~~fg~~~l 80 (214)
T COG0664 3 KENPLLNLLPSELLELLALKLEVRKLPKGEVLFTEGEEADSLYIILSGIVKLYANTEDGREII--LGFLGPGDFFGELAL 80 (214)
T ss_pred ccccccccCCHHHHHHHhhhceeEeeCCCCEEEcCCCcCceEEEEEEeEEEEEEECCCCcEEE--EEEecCCchhhhHHH
Confidence 3456666778888888888899999999999999999999999999999999874 4577766 789999999999988
Q ss_pred hhhcCCCCCCCCCCcccEEEEcceeEEEEEcHHHHHHHHHhcHHHHHHHHHHHHHhhh
Q 005042 554 TWALDPKSVTNLPLSTRTVRALDEVEAFSLRAEELKFVASQFRRLHSRQVQHTFRFYS 611 (717)
Q Consensus 554 ~~~l~~~~~~n~p~s~~tv~A~t~~el~~L~~~df~~ll~~~P~l~~k~l~~~~r~~s 611 (717)
+...+ +..+++|+++|+++.+++++|.+++.+.|.+....++.+.+.+.
T Consensus 81 ---~~~~~------~~~~~~a~~~~~~~~~~~~~~~~~~~~~p~l~~~l~~~~~~~l~ 129 (214)
T COG0664 81 ---LGGDP------RSASAVALTDVEVLEIPRKDFLELLAESPKLALALLRLLARRLR 129 (214)
T ss_pred ---hcCCC------ccceEEEcceEEEEEecHHHHHHHHhhCcHHHHHHHHHHHHHHH
Confidence 44444 88999999999999999999999987788877776666655444
No 16
>KOG0614 consensus cGMP-dependent protein kinase [Signal transduction mechanisms]
Probab=99.20 E-value=3.3e-11 Score=129.95 Aligned_cols=132 Identities=27% Similarity=0.448 Sum_probs=112.4
Q ss_pred HHHHHHhccCcCCCCCcHHHHHHHHhhceeEEecCCcEEEccCCCcceEEEEEeeEEEEEEecCCeeeeeeeeecCCCCe
Q 005042 468 HLCLNLVRRVPLFANMDERLLDAICERLKPSLCTEGTCVVREGDPVVEMLLIIRGSLESVTTDGGRTGFYNRGMLKEGDF 547 (717)
Q Consensus 468 ~l~~~lL~~iplF~~ls~~~l~~l~~~l~~~~~~~ge~Ii~eGd~~~~myfI~~G~v~v~~~~~g~e~~~~~~~l~~Gd~ 547 (717)
..+..+|+.+|+|.+++++.+..+++.++...|..|++|+++|+.++.+|+|.+|.|.+...+.+.++-..+..+..||+
T Consensus 268 ~~~~~fLrsv~~~q~l~Ee~L~KiaD~le~~~Yd~g~yIirqge~G~~ffii~~G~V~vtq~~e~~~q~~~lr~l~kGd~ 347 (732)
T KOG0614|consen 268 EQYMNFLRSVPLFQNLPEELLLKIADVLEEEYYDAGEYIIRQGEKGDTFFIISKGTVKVTQQDEGSTQPQELRTLNKGDY 347 (732)
T ss_pred HHHHHHHHhhhhhccCCHHHHHHHHHHHHHHhhcCCceEEeecCCCCeEEEEecceEEEeecCCCCCchhHHhhccccch
Confidence 34577899999999999999999999999999999999999999999999999999999976665433334899999999
Q ss_pred ecHHhHhhhcCCCCCCCCCCcccEEEEcce-eEEEEEcHHHHHHHHHhcHHHHHHHHHHHHH
Q 005042 548 CGEELLTWALDPKSVTNLPLSTRTVRALDE-VEAFSLRAEELKFVASQFRRLHSRQVQHTFR 608 (717)
Q Consensus 548 fGe~~l~~~l~~~~~~n~p~s~~tv~A~t~-~el~~L~~~df~~ll~~~P~l~~k~l~~~~r 608 (717)
|||-+| +.... |++++.|..+ ++++.|+++.|.+++....++..+......|
T Consensus 348 FGE~al---~~edv------RtAniia~~~gv~cl~lDresF~~liG~l~~l~ek~~~D~~r 400 (732)
T KOG0614|consen 348 FGERAL---LGEDV------RTANIIAQAPGVECLTLDRESFKKLIGDLEELKEKDYGDEER 400 (732)
T ss_pred hhHHHh---hccCc------cchhhhccCCCceEEEecHHHHHHhcccHHHhhhhhccchhh
Confidence 999988 44433 8899999887 9999999999999999888776554444433
No 17
>KOG1419 consensus Voltage-gated K+ channel KCNQ [Inorganic ion transport and metabolism]
Probab=99.19 E-value=1.8e-10 Score=125.09 Aligned_cols=91 Identities=21% Similarity=0.301 Sum_probs=73.9
Q ss_pred chHHHHHHHHHHHHHhhccccCCCCccCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHH
Q 005042 343 QFLSKLFYCLWFGLQNLSTLGQGLKTSTYIQEIIFSILIGIAGLVLLALLIGNMQTYLTSLTVRLEEMRIKRRDSEQWMH 422 (717)
Q Consensus 343 ~~~~~Y~~slywal~tlttvGygd~~~~~~~E~~f~i~i~i~G~~lfa~lIg~~~~~l~~~~~~~~e~~~k~~~~~~~m~ 422 (717)
+-+..|-.++||++.|+||+||||++|.|...++++....++|+.+||+--|.+++=+.-.-+ |+.| =++|-+
T Consensus 265 ~~F~TyADALWWG~ITltTIGYGDk~P~TWlGr~laa~fsligiSFFALPAGILGSGfALKVQ--eq~R-----QKHf~r 337 (654)
T KOG1419|consen 265 DEFPTYADALWWGVITLTTIGYGDKTPQTWLGRLLAACFSLIGISFFALPAGILGSGFALKVQ--EQHR-----QKHFNR 337 (654)
T ss_pred ccchhHHHHHHhhheeEEeeccCCcCcccchhHHHHHHHHHHHHHHHhcccccccchhhhhhH--HHHH-----HHHHHh
Confidence 346778899999999999999999999999999999999999999999988888776543221 2222 146677
Q ss_pred hCCCCHHHHHHHHHHHHH
Q 005042 423 HRWLPQDLRERVRRYDHF 440 (717)
Q Consensus 423 ~~~lp~~L~~rV~~y~~y 440 (717)
.++.-..|.+-..|||.-
T Consensus 338 rr~pAA~LIQc~WR~yaa 355 (654)
T KOG1419|consen 338 RRNPAASLIQCAWRYYAA 355 (654)
T ss_pred hcchHHHHHHHHHHHHhc
Confidence 788888999999888853
No 18
>TIGR03697 NtcA_cyano global nitrogen regulator NtcA, cyanobacterial. Members of this protein family, found in the cyanobacteria, are the global nitrogen regulator NtcA. This DNA-binding transcriptional regulator is required for expressing many different ammonia-repressible genes. The consensus NtcA-binding site is G T A N(8)T A C.
Probab=99.16 E-value=4.4e-10 Score=111.73 Aligned_cols=125 Identities=15% Similarity=0.121 Sum_probs=93.6
Q ss_pred CcEEEccCCCcceEEEEEeeEEEEEE-ecCCeeeeeeeeecCCCCeecHHhHhhhcCCCCCCCCCCcccEEEEcceeEEE
Q 005042 503 GTCVVREGDPVVEMLLIIRGSLESVT-TDGGRTGFYNRGMLKEGDFCGEELLTWALDPKSVTNLPLSTRTVRALDEVEAF 581 (717)
Q Consensus 503 ge~Ii~eGd~~~~myfI~~G~v~v~~-~~~g~e~~~~~~~l~~Gd~fGe~~l~~~l~~~~~~n~p~s~~tv~A~t~~el~ 581 (717)
|+.|+++||+++.+|+|.+|.|+++. ..+|++.+ +..+++|++||+.++ +.+.+ .++..+++|+++|+++
T Consensus 1 g~~l~~~g~~~~~~~~i~~G~v~~~~~~~~G~e~~--l~~~~~g~~~G~~~~---~~~~~----~~~~~~~~A~~~~~v~ 71 (193)
T TIGR03697 1 GKTIFFPGDPAEKVYFLRRGAVKLSRVYESGEEIT--VALLRENSVFGVLSL---ITGHR----SDRFYHAVAFTRVELL 71 (193)
T ss_pred CCceecCCCCCCcEEEEEecEEEEEEeCCCCcEee--eEEccCCCEeeeeee---ccCCC----CccceEEEEecceEEE
Confidence 78999999999999999999999886 45577766 899999999999877 44432 1145789999999999
Q ss_pred EEcHHHHHHHHHhcHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHhhHHHHHHHh
Q 005042 582 SLRAEELKFVASQFRRLHSRQVQHTFRFYSHQWRTWAACFIQATWRRKSQRKKATEQRLK 641 (717)
Q Consensus 582 ~L~~~df~~ll~~~P~l~~k~l~~~~r~~s~~~~~~~~~~~q~~~~~~~~r~~~~~~~~~ 641 (717)
.+++++|++++.++|++....++.+.+.. +................|... .+..-
T Consensus 72 ~i~~~~~~~l~~~~p~l~~~~~~~l~~~l----~~~~~~~~~l~~~~~~~Rla~-~L~~l 126 (193)
T TIGR03697 72 AVPIEQVEKAIEEDPDLSMLLLQGLSSRI----LQTEMMIETLAHRDMGSRLVS-FLLIL 126 (193)
T ss_pred EeeHHHHHHHHHHChHHHHHHHHHHHHHH----HHHHHHHHHHHhCCHHHHHHH-HHHHH
Confidence 99999999999999999887777655433 222222333344444555555 44443
No 19
>PRK09391 fixK transcriptional regulator FixK; Provisional
Probab=99.16 E-value=3.4e-10 Score=116.25 Aligned_cols=108 Identities=15% Similarity=0.111 Sum_probs=90.5
Q ss_pred HHHhhceeEEecCCcEEEccCCCcceEEEEEeeEEEEEEe-cCCeeeeeeeeecCCCCeecHHhHhhhcCCCCCCCCCCc
Q 005042 490 AICERLKPSLCTEGTCVVREGDPVVEMLLIIRGSLESVTT-DGGRTGFYNRGMLKEGDFCGEELLTWALDPKSVTNLPLS 568 (717)
Q Consensus 490 ~l~~~l~~~~~~~ge~Ii~eGd~~~~myfI~~G~v~v~~~-~~g~e~~~~~~~l~~Gd~fGe~~l~~~l~~~~~~n~p~s 568 (717)
.++.....+.|++|+.|+.+||+++.+|||.+|.|+++.. .+|++.+ +..+.+||+||+.. ..+ +
T Consensus 33 ~~~~~~~~~~~~kge~l~~~Gd~~~~ly~I~~G~vkl~~~~~~G~e~i--~~~~~~Gd~fG~~~------~~~------~ 98 (230)
T PRK09391 33 HAGLVASEFSYKKGEEIYGEGEPADYVYQVESGAVRTYRLLSDGRRQI--GAFHLPGDVFGLES------GST------H 98 (230)
T ss_pred cccceeeeEEECCCCEEECCCCCCCeEEEEEeCEEEEEEECCCCcEEE--EEEecCCceecccC------CCc------C
Confidence 4456678889999999999999999999999999999864 4566665 78899999999531 222 6
Q ss_pred ccEEEEcceeEEEEEcHHHHHHHHHhcHHHHHHHHHHHHHhhh
Q 005042 569 TRTVRALDEVEAFSLRAEELKFVASQFRRLHSRQVQHTFRFYS 611 (717)
Q Consensus 569 ~~tv~A~t~~el~~L~~~df~~ll~~~P~l~~k~l~~~~r~~s 611 (717)
..+++|+++|+++.|+.++|++++.++|++....++.+.+.+.
T Consensus 99 ~~~~~A~~ds~v~~i~~~~f~~l~~~~p~l~~~l~~~l~~~l~ 141 (230)
T PRK09391 99 RFTAEAIVDTTVRLIKRRSLEQAAATDVDVARALLSLTAGGLR 141 (230)
T ss_pred CeEEEEcCceEEEEEEHHHHHHHHhhChHHHHHHHHHHHHHHH
Confidence 7899999999999999999999999999988877776665443
No 20
>PLN02868 acyl-CoA thioesterase family protein
Probab=99.12 E-value=4.8e-10 Score=125.12 Aligned_cols=113 Identities=24% Similarity=0.344 Sum_probs=98.7
Q ss_pred HHHhccCcCCCCCcHHHHHHHHhhceeEEecCCcEEEccCCCcceEEEEEeeEEEEEEecCCeeeeeeeeecCCCCeecH
Q 005042 471 LNLVRRVPLFANMDERLLDAICERLKPSLCTEGTCVVREGDPVVEMLLIIRGSLESVTTDGGRTGFYNRGMLKEGDFCGE 550 (717)
Q Consensus 471 ~~lL~~iplF~~ls~~~l~~l~~~l~~~~~~~ge~Ii~eGd~~~~myfI~~G~v~v~~~~~g~e~~~~~~~l~~Gd~fGe 550 (717)
.+.++++++|++++++.++.++..++.+.|++|++|+++||.++.+|+|++|.|+++..+++.+.+ +..+++|++||+
T Consensus 7 ~~~L~~~~~F~~L~~~~l~~l~~~~~~~~~~~Ge~I~~~Gd~~~~lyiI~~G~V~v~~~~~~ge~~--l~~l~~Gd~fG~ 84 (413)
T PLN02868 7 VEFLGSVPLLQRLPSSSLKKIAEVVVPKRYGKGEYVVREGEPGDGLYFIWKGEAEVSGPAEEESRP--EFLLKRYDYFGY 84 (413)
T ss_pred HHHHhcCcccccCCHHHHHHHHHhceEEEECCCCEEEeCCCcCceEEEEEeCEEEEEEECCCCcEE--EEEeCCCCEeeh
Confidence 456889999999999999999999999999999999999999999999999999998765433444 788999999997
Q ss_pred HhHhhhcCCCCCCCCCCcccEEEEcceeEEEEEcHHHHHHHHHhcH
Q 005042 551 ELLTWALDPKSVTNLPLSTRTVRALDEVEAFSLRAEELKFVASQFR 596 (717)
Q Consensus 551 ~~l~~~l~~~~~~n~p~s~~tv~A~t~~el~~L~~~df~~ll~~~P 596 (717)
. + .+.+ +..+++|.++|+++.|++++|..+....+
T Consensus 85 ~-l----~~~~------~~~~~~A~~d~~v~~ip~~~~~~~~~~~~ 119 (413)
T PLN02868 85 G-L----SGSV------HSADVVAVSELTCLVLPHEHCHLLSPKSI 119 (413)
T ss_pred h-h----CCCC------cccEEEECCCEEEEEEcHHHHhhhccccc
Confidence 5 3 3333 78999999999999999999998876654
No 21
>PRK13918 CRP/FNR family transcriptional regulator; Provisional
Probab=99.10 E-value=1.9e-09 Score=108.15 Aligned_cols=126 Identities=16% Similarity=0.133 Sum_probs=92.1
Q ss_pred hceeEEecCCcEEEccCC--CcceEEEEEeeEEEEEEe-cCCeeeeeeeeecCCCCeecHHhHhhhcCCCCCCCCCCccc
Q 005042 494 RLKPSLCTEGTCVVREGD--PVVEMLLIIRGSLESVTT-DGGRTGFYNRGMLKEGDFCGEELLTWALDPKSVTNLPLSTR 570 (717)
Q Consensus 494 ~l~~~~~~~ge~Ii~eGd--~~~~myfI~~G~v~v~~~-~~g~e~~~~~~~l~~Gd~fGe~~l~~~l~~~~~~n~p~s~~ 570 (717)
.++.+.|++|++|+++|| +++.+|+|++|.|+++.. .+|++.+ +..+.|||+||+..+ .. .+ ++.
T Consensus 5 ~~~~~~~~kg~~l~~~Gd~~~~~~~y~I~~G~vr~~~~~~~G~e~~--l~~~~~Gd~~G~~~~---~~-~~------~~~ 72 (202)
T PRK13918 5 VVDTVTYRPGAVILYPGVPGPSDMLYRVRSGLVRLHTVDDEGNALT--LRYVRPGEYFGEEAL---AG-AE------RAY 72 (202)
T ss_pred ccceeEecCCCEEEcCCCCCCCCeEEEEEeeEEEEEEECCCCCEEE--EEEecCCCeechHHh---cC-CC------CCc
Confidence 467789999999999999 779999999999999874 4677776 899999999999755 32 33 678
Q ss_pred EEEEcceeEEEEEcHHHHHHHHHhcHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHhhHHHHHHHhh
Q 005042 571 TVRALDEVEAFSLRAEELKFVASQFRRLHSRQVQHTFRFYSHQWRTWAACFIQATWRRKSQRKKATEQRLKE 642 (717)
Q Consensus 571 tv~A~t~~el~~L~~~df~~ll~~~P~l~~k~l~~~~r~~s~~~~~~~~~~~q~~~~~~~~r~~~~~~~~~~ 642 (717)
+++|+++|+++.|+.++| .|++....++...+..... .+.+.........+|... .+.+-+
T Consensus 73 ~~~A~~~~~v~~i~~~~~------~~~~~~~l~~~l~~~~~~~----~~~~~~l~~~~~~~Rla~-~Ll~l~ 133 (202)
T PRK13918 73 FAEAVTDSRIDVLNPALM------SAEDNLVLTQHLVRTLARA----YESIYRLVGQRLKNRIAA-ALLELS 133 (202)
T ss_pred eEEEcCceEEEEEEHHHc------ChhhHHHHHHHHHHHHHHH----HHHHHHHHhCchHHHHHH-HHHHHH
Confidence 999999999999999987 4666666666655544432 222333344444455554 554433
No 22
>COG2905 Predicted signal-transduction protein containing cAMP-binding and CBS domains [Signal transduction mechanisms]
Probab=99.09 E-value=1.4e-09 Score=119.31 Aligned_cols=116 Identities=17% Similarity=0.289 Sum_probs=103.1
Q ss_pred HHHhccCcCCCCCcHHHHHHHHhhceeEEecCCcEEEccCCCcceEEEEEeeEEEEEEecCCeeeeeeeeecCCCCeecH
Q 005042 471 LNLVRRVPLFANMDERLLDAICERLKPSLCTEGTCVVREGDPVVEMLLIIRGSLESVTTDGGRTGFYNRGMLKEGDFCGE 550 (717)
Q Consensus 471 ~~lL~~iplF~~ls~~~l~~l~~~l~~~~~~~ge~Ii~eGd~~~~myfI~~G~v~v~~~~~g~e~~~~~~~l~~Gd~fGe 550 (717)
.+++.++|.|..++++.+++|...+....|.+||.|+..|.+..++|+|.+|.|++...+|. . +..+.+||.||-
T Consensus 6 ~~Fl~~~pPF~~L~~eel~~L~~~l~v~yy~kge~ii~~~~p~~~l~vi~kG~vev~~~~g~---v--~~~~~~gdlFg~ 80 (610)
T COG2905 6 DQFLQQHPPFSQLPAEELEQLMGALEVKYYRKGEIIIYAGSPVHYLYVIRKGVVEVRSDGGE---V--LDRLAAGDLFGF 80 (610)
T ss_pred HHHHhcCCCcccCCHHHHHHHHhhhccccccCCCeeecCCCCcceeEEEEeceeeEEcCCCe---e--eeeeccCccccc
Confidence 56789999999999999999999999999999999999999999999999999998875543 2 799999999999
Q ss_pred HhHhhhcCCCCCCCCCCcccEEEEcceeEEEEEcHHHHHHHHHhcHHHHH
Q 005042 551 ELLTWALDPKSVTNLPLSTRTVRALDEVEAFSLRAEELKFVASQFRRLHS 600 (717)
Q Consensus 551 ~~l~~~l~~~~~~n~p~s~~tv~A~t~~el~~L~~~df~~ll~~~P~l~~ 600 (717)
.++ .+..+ ......|.+|+.+|.|+++.|.+++.++|+++.
T Consensus 81 ~~l---~~~~~------~~~~~~aeedsl~y~lp~s~F~ql~~~n~~f~~ 121 (610)
T COG2905 81 SSL---FTELN------KQRYMAAEEDSLCYLLPKSVFMQLMEENPEFAD 121 (610)
T ss_pred hhh---cccCC------CcceeEeeccceEEecCHHHHHHHHHhCcHHHH
Confidence 988 44333 456788889999999999999999999998743
No 23
>KOG1113 consensus cAMP-dependent protein kinase types I and II, regulatory subunit [Signal transduction mechanisms]
Probab=99.06 E-value=4.1e-10 Score=117.11 Aligned_cols=122 Identities=18% Similarity=0.230 Sum_probs=104.5
Q ss_pred HHHhccCcCCCCCcHHHHHHHHhhceeEEecCCcEEEccCCCcceEEEEEeeEEEEEEecCCeeeeeeeeecCCCCeecH
Q 005042 471 LNLVRRVPLFANMDERLLDAICERLKPSLCTEGTCVVREGDPVVEMLLIIRGSLESVTTDGGRTGFYNRGMLKEGDFCGE 550 (717)
Q Consensus 471 ~~lL~~iplF~~ls~~~l~~l~~~l~~~~~~~ge~Ii~eGd~~~~myfI~~G~v~v~~~~~g~e~~~~~~~l~~Gd~fGe 550 (717)
.+.+++.-+|.+++++.+..+...+..+.++.|+.|+++|+.++.+|+|-+|.++++.. |+ .+..+.+|..|||
T Consensus 121 ~~a~r~~~LF~~Ld~eq~~~v~dam~~~~v~~G~~Vi~qGdeGd~fYvI~kGt~dVyv~--~~----~v~~~~~g~sFGE 194 (368)
T KOG1113|consen 121 EEAFRKNLLFANLDDEQLSQVLDAMFEKRVKAGETVIKQGDEGDNFYVIDKGTFDVYVN--GT----YVTTYSPGGSFGE 194 (368)
T ss_pred HHHHHhccccccCCHHHHHHHHHhhceeeecCCcEEEecCCcCCcEEEEecceEEEEEC--Ce----EEeeeCCCCchhh
Confidence 56777888999999999999999999999999999999999999999999999999975 22 1789999999999
Q ss_pred HhHhhhcCCCCCCCCCCcccEEEEcceeEEEEEcHHHHHHHHHhcHHHHHHHHHHHH
Q 005042 551 ELLTWALDPKSVTNLPLSTRTVRALDEVEAFSLRAEELKFVASQFRRLHSRQVQHTF 607 (717)
Q Consensus 551 ~~l~~~l~~~~~~n~p~s~~tv~A~t~~el~~L~~~df~~ll~~~P~l~~k~l~~~~ 607 (717)
.+++ .+.| +.+|+.|.+++.+|.|++..|..++-.......+.+....
T Consensus 195 lALm---yn~P------RaATv~a~t~~klWgldr~SFrrIi~~s~~kkrkMy~~~l 242 (368)
T KOG1113|consen 195 LALM---YNPP------RAATVVAKSLKKLWGLDRTSFRRIIMKSCIKKRKMYEPFL 242 (368)
T ss_pred hHhh---hCCC------cccceeeccccceEEEeeceeEEEeeccchhhhhhhhhhh
Confidence 9983 3444 8999999999999999999999887666555444444433
No 24
>KOG0614 consensus cGMP-dependent protein kinase [Signal transduction mechanisms]
Probab=99.05 E-value=2.2e-10 Score=123.78 Aligned_cols=130 Identities=19% Similarity=0.358 Sum_probs=110.9
Q ss_pred HHHHHHHHhccCcCCCCCcHHHHHHHHhhceeEEecCCcEEEccCCCcceEEEEEeeEEEEEEecCCeeeeeeeeecCCC
Q 005042 466 KRHLCLNLVRRVPLFANMDERLLDAICERLKPSLCTEGTCVVREGDPVVEMLLIIRGSLESVTTDGGRTGFYNRGMLKEG 545 (717)
Q Consensus 466 ~~~l~~~lL~~iplF~~ls~~~l~~l~~~l~~~~~~~ge~Ii~eGd~~~~myfI~~G~v~v~~~~~g~e~~~~~~~l~~G 545 (717)
..++..+.+....++++++..++.++..+|.++.|.+|++|++|||+++.+|++.+|++++... |+- +...++|
T Consensus 148 ~k~lI~dAi~~NdFLknLd~~Qi~e~v~~Myp~~~~~gs~IIrege~Gs~~yV~aeG~~~V~~~--g~l----l~~m~~g 221 (732)
T KOG0614|consen 148 AKQLIRDAIQKNDFLKNLDASQIKELVDCMYPVEYRAGSWIIREGEPGSHLYVSAEGELQVSRE--GKL----LGKMGAG 221 (732)
T ss_pred HHHHHHHHHHhhHHHHhhhHHHHHHHHHhhCcccccCCcEEEecCCCCceEEEeecceEEEeeC--Cee----eeccCCc
Confidence 3455577788888999999999999999999999999999999999999999999999998853 332 7999999
Q ss_pred CeecHHhHhhhcCCCCCCCCCCcccEEEEcceeEEEEEcHHHHHHHHHhcHHHHHHHHHHHHHhh
Q 005042 546 DFCGEELLTWALDPKSVTNLPLSTRTVRALDEVEAFSLRAEELKFVASQFRRLHSRQVQHTFRFY 610 (717)
Q Consensus 546 d~fGe~~l~~~l~~~~~~n~p~s~~tv~A~t~~el~~L~~~df~~ll~~~P~l~~k~l~~~~r~~ 610 (717)
..|||.++++. -+ |+++|+|+++|.+|+|+++-|+.++......+........|.-
T Consensus 222 tvFGELAILyn---ct------RtAsV~alt~~~lWaidR~vFq~IM~~tg~~r~~~~~~fLrsv 277 (732)
T KOG0614|consen 222 TVFGELAILYN---CT------RTASVRALTDVRLWAIDREVFQAIMMRTGLERHEQYMNFLRSV 277 (732)
T ss_pred hhhhHHHHHhC---Cc------chhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 99999998543 33 8999999999999999999999999887766655555555543
No 25
>KOG1545 consensus Voltage-gated shaker-like K+ channel KCNA [Inorganic ion transport and metabolism]
Probab=99.01 E-value=4e-11 Score=123.76 Aligned_cols=54 Identities=20% Similarity=0.387 Sum_probs=46.3
Q ss_pred HHHHHHHHhhccccCCCCccCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 005042 350 YCLWFGLQNLSTLGQGLKTSTYIQEIIFSILIGIAGLVLLALLIGNMQTYLTSL 403 (717)
Q Consensus 350 ~slywal~tlttvGygd~~~~~~~E~~f~i~i~i~G~~lfa~lIg~~~~~l~~~ 403 (717)
.+||||+.|||||||||..|.|.+.++...+++|.|++--|+-+--+.+-+...
T Consensus 396 daFWwavVTMTTVGYGDm~P~TvgGKIVGslCAiaGVLTiALPVPVIVsNFnyF 449 (507)
T KOG1545|consen 396 DAFWWAVVTMTTVGYGDMVPVTVGGKIVGSLCAIAGVLTIALPVPVIVSNFNYF 449 (507)
T ss_pred ccceEEEEEEEeeccccceecccCceehhhHHhhhhheEecccccEEEecccce
Confidence 479999999999999999999999999999999999998888765555444333
No 26
>PF07885 Ion_trans_2: Ion channel; InterPro: IPR013099 This entry includes the two membrane helix type ion channels found in bacteria []. ; PDB: 1KKD_A 2A0L_A 1ORQ_C 3UKM_C 1LNQ_E 3OUS_A 3LDC_A 3LDD_A 3RBZ_A 3LDE_A ....
Probab=98.90 E-value=1.4e-08 Score=86.18 Aligned_cols=55 Identities=25% Similarity=0.457 Sum_probs=49.0
Q ss_pred HHHHHHHHHHHhhccccCCCCccCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005042 347 KLFYCLWFGLQNLSTLGQGLKTSTYIQEIIFSILIGIAGLVLLALLIGNMQTYLT 401 (717)
Q Consensus 347 ~Y~~slywal~tlttvGygd~~~~~~~E~~f~i~i~i~G~~lfa~lIg~~~~~l~ 401 (717)
.|..++||++.|+||+||||+.|.+..+++++++.+++|+.++++.++.+.+.++
T Consensus 24 ~~~da~yfs~~t~tTvGyGDi~p~t~~gr~~~~~~~~~G~~~~~~~~~~~~~~l~ 78 (79)
T PF07885_consen 24 SFIDALYFSFVTITTVGYGDIVPQTPAGRIFTIIYMLIGIFLFALFLSVLASVLT 78 (79)
T ss_dssp SHHHHHHHHHHHHTT---SSSSTSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHhcccCCCccCCccchHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 4567999999999999999999999999999999999999999999999999875
No 27
>KOG1113 consensus cAMP-dependent protein kinase types I and II, regulatory subunit [Signal transduction mechanisms]
Probab=98.73 E-value=1.7e-08 Score=105.18 Aligned_cols=118 Identities=20% Similarity=0.343 Sum_probs=105.0
Q ss_pred HHHHHHHHhccCcCCCCCcHHHHHHHHhhceeEEecCCcEEEccCCCcceEEEEEeeEEEEEEecCCeeeeeeeeecCCC
Q 005042 466 KRHLCLNLVRRVPLFANMDERLLDAICERLKPSLCTEGTCVVREGDPVVEMLLIIRGSLESVTTDGGRTGFYNRGMLKEG 545 (717)
Q Consensus 466 ~~~l~~~lL~~iplF~~ls~~~l~~l~~~l~~~~~~~ge~Ii~eGd~~~~myfI~~G~v~v~~~~~g~e~~~~~~~l~~G 545 (717)
++-|+.+.|+.+|++..++..+...++..+.++.|.+|+.|+.+|++++.+|+|.+|.|.+....+| + .+ .++.|
T Consensus 234 krkMy~~~l~s~pil~~l~k~er~kv~dal~~k~y~~G~~Vi~qg~~ge~f~~i~eGEvdv~~~~~~---v-~v-kl~~~ 308 (368)
T KOG1113|consen 234 KRKMYEPFLESVPILESLEKLERAKVADALGTKSYKDGERVIVQGDQGEHFYIIEEGEVDVLKKRDG---V-EV-KLKKG 308 (368)
T ss_pred hhhhhhhhhhcchhhHHHHHHHHHhhhcccceeeccCCceEEeccCCcceEEEecccccchhhccCC---e-EE-Eechh
Confidence 4567899999999999999999999999999999999999999999999999999999998865544 2 24 99999
Q ss_pred CeecHHhHhhhcCCCCCCCCCCcccEEEEcceeEEEEEcHHHHHHHHHhcHH
Q 005042 546 DFCGEELLTWALDPKSVTNLPLSTRTVRALDEVEAFSLRAEELKFVASQFRR 597 (717)
Q Consensus 546 d~fGe~~l~~~l~~~~~~n~p~s~~tv~A~t~~el~~L~~~df~~ll~~~P~ 597 (717)
|+|||.++ +...| +.++|.|.++..+..++++.|+.++.-.-+
T Consensus 309 dyfge~al---~~~~p------r~Atv~a~~~~kc~~~dk~~ferllgpc~d 351 (368)
T KOG1113|consen 309 DYFGELAL---LKNLP------RAATVVAKGRLKCAKLDKPRFERLLGPCQD 351 (368)
T ss_pred hhcchHHH---Hhhch------hhceeeccCCceeeeeChHHHHHHhhHHHH
Confidence 99999988 55555 889999999999999999999999876443
No 28
>KOG1420 consensus Ca2+-activated K+ channel Slowpoke, alpha subunit [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=98.68 E-value=2.5e-08 Score=108.36 Aligned_cols=137 Identities=18% Similarity=0.227 Sum_probs=93.6
Q ss_pred HHHHHHHHHHHHHhhccccCCCCccCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhC
Q 005042 345 LSKLFYCLWFGLQNLSTLGQGLKTSTYIQEIIFSILIGIAGLVLLALLIGNMQTYLTSLTVRLEEMRIKRRDSEQWMHHR 424 (717)
Q Consensus 345 ~~~Y~~slywal~tlttvGygd~~~~~~~E~~f~i~i~i~G~~lfa~lIg~~~~~l~~~~~~~~e~~~k~~~~~~~m~~~ 424 (717)
--.|..|.|+-+.||+||||||+..+|...++|.+|..+.|+.+||-.+..+..++.+-.+-.-||+..-- =+|-
T Consensus 286 rltyw~cvyfl~vtmstvgygdvyc~t~lgrlfmvffil~glamfasyvpeiielignr~kyggeyk~ehg-----kkhi 360 (1103)
T KOG1420|consen 286 RLTYWECVYFLMVTMSTVGYGDVYCKTTLGRLFMVFFILGGLAMFASYVPEIIELIGNRKKYGGEYKAEHG-----KKHI 360 (1103)
T ss_pred cchhhheeeeeEEEeeeccccceeehhhhhHHHHHHHHHHHHHHHHhhhHHHHHHHccccccCceeehhcC-----CeeE
Confidence 35688999999999999999999999999999999999999999999999999999877654444432100 0000
Q ss_pred CCC-HHHHHHHHHHHHHHHhhh-cCCC-HHHHHHhCChhHHHHHHHHHHHHHhccCcCCCC--CcHHHHH
Q 005042 425 WLP-QDLRERVRRYDHFKWLET-RGVD-EEHLVQNLPKDLRRDIKRHLCLNLVRRVPLFAN--MDERLLD 489 (717)
Q Consensus 425 ~lp-~~L~~rV~~y~~y~w~~~-~~~d-e~~ll~~Lp~~Lr~~I~~~l~~~lL~~iplF~~--ls~~~l~ 489 (717)
-+= .-.-+.|-.|++---.+. ..+| |--+|...||+|--| .++.....++.+|++ |++-.+.
T Consensus 361 vvcghityesvshflkdflhedrddvdvevvflhr~~pdlele---glfkrhft~veffqgtvmnp~dl~ 427 (1103)
T KOG1420|consen 361 VVCGHITYESVSHFLKDFLHEDRDDVDVEVVFLHRISPDLELE---GLFKRHFTQVEFFQGTVMNPHDLA 427 (1103)
T ss_pred EEecceeHHHHHHHHHHHhhccccccceEEEEEecCCCCcchH---HHHhhheeeEEEecccccChhhhh
Confidence 011 111334555544333333 3455 445778999998655 345556677888874 5555443
No 29
>KOG4390 consensus Voltage-gated A-type K+ channel KCND [Inorganic ion transport and metabolism]
Probab=98.46 E-value=1.1e-08 Score=106.64 Aligned_cols=51 Identities=24% Similarity=0.529 Sum_probs=44.9
Q ss_pred HHHHHHHHhhccccCCCCccCchhHHHHHHHHHHHHHHHHHHHH----HHHHHHH
Q 005042 350 YCLWFGLQNLSTLGQGLKTSTYIQEIIFSILIGIAGLVLLALLI----GNMQTYL 400 (717)
Q Consensus 350 ~slywal~tlttvGygd~~~~~~~E~~f~i~i~i~G~~lfa~lI----g~~~~~l 400 (717)
.+||+.+.||||+||||..|.|...++|..+..+.|+++.|+-+ .|.+.+.
T Consensus 359 aaFWYTIVTmTTLGYGDMVp~TIaGKIfGsiCSLSGVLVIALPVPvIVSNFSRIY 413 (632)
T KOG4390|consen 359 AAFWYTIVTMTTLGYGDMVPSTIAGKIFGSICSLSGVLVIALPVPVIVSNFSRIY 413 (632)
T ss_pred HhHhhheeeeeeccccccchHHHHHHHhhhhhcccceEEEeccccEEEechhHHH
Confidence 58999999999999999999999999999999999999888744 5555544
No 30
>KOG2968 consensus Predicted esterase of the alpha-beta hydrolase superfamily (Neuropathy target esterase), contains cAMP-binding domains [General function prediction only]
Probab=98.12 E-value=3.7e-06 Score=96.50 Aligned_cols=113 Identities=22% Similarity=0.341 Sum_probs=97.5
Q ss_pred HHHHHHhhceeEEecCCcEEEccCCCcceEEEEEeeEEEEEEe-cCCeeeeeeeeecCCCCeecHHhHhhhcCCCCCCCC
Q 005042 487 LLDAICERLKPSLCTEGTCVVREGDPVVEMLLIIRGSLESVTT-DGGRTGFYNRGMLKEGDFCGEELLTWALDPKSVTNL 565 (717)
Q Consensus 487 ~l~~l~~~l~~~~~~~ge~Ii~eGd~~~~myfI~~G~v~v~~~-~~g~e~~~~~~~l~~Gd~fGe~~l~~~l~~~~~~n~ 565 (717)
++..+-..+....+.+|+.++++||.++++|+|+.|+++.... .+|+..+ +..++.||.+|+... +..++
T Consensus 500 ~lr~~D~AldWv~l~~g~alyrqgD~Sd~iyvVl~GRlRsv~~~~~~k~~i--~~EygrGd~iG~~E~---lt~~~---- 570 (1158)
T KOG2968|consen 500 FLRKLDFALDWVRLEPGQALYRQGDSSDSIYVVLNGRLRSVIRQSGGKKEI--VGEYGRGDLIGEVEM---LTKQP---- 570 (1158)
T ss_pred HHhhhhhhcceEEeccccHHHhcCCccCcEEEEecCeehhhhhccCccchh--hhhccCcceeehhHH---hhcCC----
Confidence 4455556678889999999999999999999999999998754 4555445 799999999999977 55666
Q ss_pred CCcccEEEEcceeEEEEEcHHHHHHHHHhcHHHHHHHHHHHHHhh
Q 005042 566 PLSTRTVRALDEVEAFSLRAEELKFVASQFRRLHSRQVQHTFRFY 610 (717)
Q Consensus 566 p~s~~tv~A~t~~el~~L~~~df~~ll~~~P~l~~k~l~~~~r~~ 610 (717)
+..|+.|+.++++..|+..-|..+..+||.+-.++.+..++.+
T Consensus 571 --R~tTv~AvRdSelariPe~l~~~ik~ryP~v~~rl~~ll~~~~ 613 (1158)
T KOG2968|consen 571 --RATTVMAVRDSELARIPEGLLNFIKLRYPQVVTRLIKLLAEKI 613 (1158)
T ss_pred --ccceEEEEeehhhhhccHHHHHHHHHhccHHHHHHHHHHHHHh
Confidence 8889999999999999999999999999999888888877776
No 31
>PF08412 Ion_trans_N: Ion transport protein N-terminal; InterPro: IPR013621 This domain is found to the N terminus of IPR005821 from INTERPRO in voltage- and cyclic nucleotide-gated K/Na ion channels.
Probab=98.00 E-value=2.5e-06 Score=71.14 Aligned_cols=49 Identities=16% Similarity=0.341 Sum_probs=38.4
Q ss_pred hhccccCCccc--CCCCeeecCCChHHHHHHHHHHHHHHHHHhhhcccccc
Q 005042 53 VARAVIPTDLK--VSDKIIIDPQDRSLLFWNRLFVFTCFISVSIDPLFFYL 101 (717)
Q Consensus 53 ~~~~~~~~~~~--~~~~~ii~P~s~~~~~W~~~~li~~i~~~~v~Pl~~~~ 101 (717)
|.+++..|+.+ ....+||||.|+|+.+||.+++++++++++++|+.+++
T Consensus 20 S~~ai~~E~~R~~~~~~~IIHP~S~fR~~WD~~m~~~~~~~~~~iP~~isF 70 (77)
T PF08412_consen 20 SKKAIEKEKERQRSSGPWIIHPFSKFRFYWDLIMLILLLYNLIIIPFRISF 70 (77)
T ss_pred cHHHHHHHHHHHhcCCCeEEcCCccHHHHHHHHHHHHHHHHHHHHhhhheE
Confidence 34444444333 34467999999999999999999999999999998543
No 32
>PRK10537 voltage-gated potassium channel; Provisional
Probab=97.95 E-value=0.00011 Score=81.03 Aligned_cols=54 Identities=22% Similarity=0.322 Sum_probs=49.6
Q ss_pred HHHHHHHHHHHhhccccCCCCccCchhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005042 347 KLFYCLWFGLQNLSTLGQGLKTSTYIQEIIFSILIGIAGLVLLALLIGNMQTYL 400 (717)
Q Consensus 347 ~Y~~slywal~tlttvGygd~~~~~~~E~~f~i~i~i~G~~lfa~lIg~~~~~l 400 (717)
.+..|+||++.|+||+||||+.|.+...++|+++++++|+.+|++.++.+...+
T Consensus 168 s~~dA~y~svvt~tTvGyGdi~p~t~~grl~~i~~ii~Gi~vf~~~is~i~~p~ 221 (393)
T PRK10537 168 SLSTAFYFSIVTMSTVGYGDIVPVSESARLFTISVIILGITVFATSISAIFGPV 221 (393)
T ss_pred CHHHHHHhhheeeecccCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 356799999999999999999999999999999999999999999998887654
No 33
>KOG3684 consensus Ca2+-activated K+ channel proteins (intermediate/small conductance classes) [Inorganic ion transport and metabolism]
Probab=97.87 E-value=0.0017 Score=70.52 Aligned_cols=91 Identities=16% Similarity=0.259 Sum_probs=75.8
Q ss_pred HHHHHHHHHHHHHhhccccCCCCccCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhC
Q 005042 345 LSKLFYCLWFGLQNLSTLGQGLKTSTYIQEIIFSILIGIAGLVLLALLIGNMQTYLTSLTVRLEEMRIKRRDSEQWMHHR 424 (717)
Q Consensus 345 ~~~Y~~slywal~tlttvGygd~~~~~~~E~~f~i~i~i~G~~lfa~lIg~~~~~l~~~~~~~~e~~~k~~~~~~~m~~~ 424 (717)
...|+.++|....|.-++||||+.|.|...+..+++..++|.++.|.+|+-++-=+ |...--+.+++||-..
T Consensus 285 ~~~~~nsmWli~iTFlsiGYGDiVP~TycGr~v~l~tGivGa~~sallvAvisRKL--------eLt~aEKhVhNFMmDt 356 (489)
T KOG3684|consen 285 TINYLNSMWLIAITFLSIGYGDIVPNTYCGRGVALLTGIVGAGCSSLLVAVIARKL--------ELTKAEKHVHNFMMDT 356 (489)
T ss_pred HHHHHhhHHHHHHHHhhcccCcccCCccccchHHHHhhhhhhhHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHH
Confidence 45688899999999999999999999999999999999999999999998887655 3333345577888888
Q ss_pred CCCHHHHHHHHHHHHHHHh
Q 005042 425 WLPQDLRERVRRYDHFKWL 443 (717)
Q Consensus 425 ~lp~~L~~rV~~y~~y~w~ 443 (717)
+|-+++++-..+=++..|.
T Consensus 357 qLTk~~KnAAA~VLqeTW~ 375 (489)
T KOG3684|consen 357 QLTKEHKNAAANVLQETWL 375 (489)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 8888888777777777776
No 34
>PF01007 IRK: Inward rectifier potassium channel; InterPro: IPR013521 Potassium channels are the most diverse group of the ion channel family [, ]. They are important in shaping the action potential, and in neuronal excitability and plasticity []. The potassium channel family is composed of several functionally distinct isoforms, which can be broadly separated into 2 groups []: the practically non-inactivating 'delayed' group and the rapidly inactivating 'transient' group. These are all highly similar proteins, with only small amino acid changes causing the diversity of the voltage-dependent gating mechanism, channel conductance and toxin binding properties. Each type of K+ channel is activated by different signals and conditions depending on their type of regulation: some open in response to depolarisation of the plasma membrane; others in response to hyperpolarisation or an increase in intracellular calcium concentration; some can be regulated by binding of a transmitter, together with intracellular kinases; while others are regulated by GTP-binding proteins or other second messengers []. In eukaryotic cells, K+ channels are involved in neural signalling and generation of the cardiac rhythm, act as effectors in signal transduction pathways involving G protein-coupled receptors (GPCRs) and may have a role in target cell lysis by cytotoxic T-lymphocytes []. In prokaryotic cells, they play a role in the maintenance of ionic homeostasis []. All K+ channels discovered so far possess a core of alpha subunits, each comprising either one or two copies of a highly conserved pore loop domain (P-domain). The P-domain contains the sequence (T/SxxTxGxG), which has been termed the K+ selectivity sequence. In families that contain one P-domain, four subunits assemble to form a selective pathway for K+ across the membrane. However, it remains unclear how the 2 P-domain subunits assemble to form a selective pore. The functional diversity of these families can arise through homo- or hetero-associations of alpha subunits or association with auxiliary cytoplasmic beta subunits. K+ channel subunits containing one pore domain can be assigned into one of two superfamilies: those that possess six transmembrane (TM) domains and those that possess only two TM domains. The six TM domain superfamily can be further subdivided into conserved gene families: the voltage-gated (Kv) channels; the KCNQ channels (originally known as KvLQT channels); the EAG-like K+ channels; and three types of calcium (Ca)-activated K+ channels (BK, IK and SK) []. The 2TM domain family comprises inward-rectifying K+ channels. In addition, there are K+ channel alpha-subunits that possess two P-domains. These are usually highly regulated K+ selective leak channels. Inwardly-rectifying potassium channels (Kir) are the principal class of two-TM domain potassium channels. They are characterised by the property of inward-rectification, which is described as the ability to allow large inward currents and smaller outward currents. Inwardly rectifying potassium channels (Kir) are responsible for regulating diverse processes including: cellular excitability, vascular tone, heart rate, renal salt flow, and insulin release []. To date, around twenty members of this superfamily have been cloned, which can be grouped into six families by sequence similarity, and these are designated Kir1.x-6.x [, ]. Cloned Kir channel cDNAs encode proteins of between ~370-500 residues, both N- and C-termini are thought to be cytoplasmic, and the N terminus lacks a signal sequence. Kir channel alpha subunits possess only 2TM domains linked with a P-domain. Thus, Kir channels share similarity with the fifth and sixth domains, and P-domain of the other families. It is thought that four Kir subunits assemble to form a tetrameric channel complex, which may be hetero- or homomeric [].; PDB: 3AT9_A 3AUW_D 3SYA_A 3ATE_A 3SYQ_A 3SYO_A 3ATB_A 3SYC_A 3AT8_A 3ATA_A ....
Probab=97.70 E-value=0.00029 Score=76.07 Aligned_cols=59 Identities=19% Similarity=0.323 Sum_probs=46.5
Q ss_pred HHHHHHHHHHHHHhhccccCCC--CccCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 005042 345 LSKLFYCLWFGLQNLSTLGQGL--KTSTYIQEIIFSILIGIAGLVLLALLIGNMQTYLTSL 403 (717)
Q Consensus 345 ~~~Y~~slywal~tlttvGygd--~~~~~~~E~~f~i~i~i~G~~lfa~lIg~~~~~l~~~ 403 (717)
...+..+|+|++.|+||+|||. ++|....-.+++++=+++|+++.|+++|-+-+=+..-
T Consensus 82 ~~~f~~aF~FSveT~tTIGYG~~~~~~~c~~a~~l~~~q~~~g~l~~a~~~Glvfar~srP 142 (336)
T PF01007_consen 82 VNSFTSAFLFSVETQTTIGYGSRYPTPECPYAIFLVTIQSLVGLLLDAFMTGLVFARFSRP 142 (336)
T ss_dssp -TTHHHHHHHHHHHHTT---SSSEB-CSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSC
T ss_pred ccchhhheeEEEEEEEEeccCCcccCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHhcCc
Confidence 3467889999999999999998 6777788888889999999999999999887766543
No 35
>KOG2968 consensus Predicted esterase of the alpha-beta hydrolase superfamily (Neuropathy target esterase), contains cAMP-binding domains [General function prediction only]
Probab=97.44 E-value=0.00076 Score=78.14 Aligned_cols=113 Identities=12% Similarity=0.112 Sum_probs=89.4
Q ss_pred HHHhhceeEEecCCcEEEccCCCcceEEEEEeeEEEEEEec-CCeeeeeeeeecCCCCeecHH-hHhhhcCCCCCCCCCC
Q 005042 490 AICERLKPSLCTEGTCVVREGDPVVEMLLIIRGSLESVTTD-GGRTGFYNRGMLKEGDFCGEE-LLTWALDPKSVTNLPL 567 (717)
Q Consensus 490 ~l~~~l~~~~~~~ge~Ii~eGd~~~~myfI~~G~v~v~~~~-~g~e~~~~~~~l~~Gd~fGe~-~l~~~l~~~~~~n~p~ 567 (717)
+++.+++...+..|++|++.|++.+.+|.+.+|.+++...+ +|++.. +..+.+|+.|-.. ++ ++-.|....+.
T Consensus 110 ~L~rh~~t~~l~~Gd~i~~~~~~dd~i~vv~sg~l~v~~~~~~g~~~l--lk~V~~G~~~tSllSi---Ld~l~~~ps~~ 184 (1158)
T KOG2968|consen 110 ELDRHIETLSLDAGDYIFKPGESDDSIYVVISGELTVHIRNGDGKEYL--LKTVPPGGSFTSLLSI---LDSLPGFPSLS 184 (1158)
T ss_pred eechhhhhhcccCCceeccCCCCCceEEEEeccceEEEecCCCCceee--EeeccCCCchHhHHHH---HHhccCCCccc
Confidence 34477788899999999999999999999999999988755 456655 8899999877765 55 33333223345
Q ss_pred cccEEEEcceeEEEEEcHHHHHHHHHhcHHHHHHHHHHHH
Q 005042 568 STRTVRALDEVEAFSLRAEELKFVASQFRRLHSRQVQHTF 607 (717)
Q Consensus 568 s~~tv~A~t~~el~~L~~~df~~ll~~~P~l~~k~l~~~~ 607 (717)
.+..++|.++|.+..++...|..+...||+-..+.+|-..
T Consensus 185 ~~i~akA~t~~tv~~~p~~sF~~~~~k~P~s~iriiQvvm 224 (1158)
T KOG2968|consen 185 RTIAAKAATDCTVARIPYTSFRESFHKNPESSIRIIQVVM 224 (1158)
T ss_pred ceeeeeeecCceEEEeccchhhhhhccChHHHHHHHHHHH
Confidence 7788999999999999999999999999986555555433
No 36
>KOG1418 consensus Tandem pore domain K+ channel [Inorganic ion transport and metabolism]
Probab=97.23 E-value=0.0006 Score=75.91 Aligned_cols=61 Identities=21% Similarity=0.425 Sum_probs=54.9
Q ss_pred HHHHHHHHHHHhhccccCCCCccCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHH
Q 005042 347 KLFYCLWFGLQNLSTLGQGLKTSTYIQEIIFSILIGIAGLVLLALLIGNMQTYLTSLTVRL 407 (717)
Q Consensus 347 ~Y~~slywal~tlttvGygd~~~~~~~E~~f~i~i~i~G~~lfa~lIg~~~~~l~~~~~~~ 407 (717)
-+..++|++.+++||+|||+++|.|...++++|+..++|+=++..++++++..+...-...
T Consensus 115 ~f~~al~fs~tv~TTIGYG~i~P~T~~Gr~~~i~YaliGIPl~li~l~~~g~~l~~~~~~~ 175 (433)
T KOG1418|consen 115 SFSSALLFSITVITTIGYGNIAPRTDAGRLFTILYALVGIPLMLLILADIGKFLADSLRKL 175 (433)
T ss_pred ecchhHhhhhheeeeccCCcccCCcCcchhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHH
Confidence 3456899999999999999999999999999999999999999999999999987654443
No 37
>PRK11832 putative DNA-binding transcriptional regulator; Provisional
Probab=96.99 E-value=0.011 Score=58.97 Aligned_cols=96 Identities=10% Similarity=0.033 Sum_probs=72.2
Q ss_pred HHHHHHhhceeEEecCCcEE-EccCCCcceEEEEEeeEEEEEEecCCeeeeeeeeecCCCCeecHHhHhhhcCCCCCCCC
Q 005042 487 LLDAICERLKPSLCTEGTCV-VREGDPVVEMLLIIRGSLESVTTDGGRTGFYNRGMLKEGDFCGEELLTWALDPKSVTNL 565 (717)
Q Consensus 487 ~l~~l~~~l~~~~~~~ge~I-i~eGd~~~~myfI~~G~v~v~~~~~g~e~~~~~~~l~~Gd~fGe~~l~~~l~~~~~~n~ 565 (717)
..+.+....++..+++|..+ ....+.....++|.+|.+.+. ..++ .. +....+...||-... +.+..
T Consensus 14 L~~~L~~~g~~~~~~~~~~~i~~~~~~~~~~~ll~~G~vsir-r~d~--ll--~~t~~aP~IlGl~~~---~~~~~---- 81 (207)
T PRK11832 14 LDKCLSRYGTRFEFNNEKQVIFSSDVNNEDTFVILEGVISLR-REEN--VL--IGITQAPYIMGLADG---LMKND---- 81 (207)
T ss_pred HHHHhhccCCeEecCCCcEEeccccCCCceEEEEEeceEEEE-ecCC--eE--EEeccCCeEeecccc---cCCCC----
Confidence 44566666778899999997 444444467999999999994 3333 22 678888889997644 33332
Q ss_pred CCcccEEEEcceeEEEEEcHHHHHHHHHhcH
Q 005042 566 PLSTRTVRALDEVEAFSLRAEELKFVASQFR 596 (717)
Q Consensus 566 p~s~~tv~A~t~~el~~L~~~df~~ll~~~P 596 (717)
..+.++|.++|+++.++.+++.++++++.
T Consensus 82 --~~~~l~ae~~c~~~~i~~~~~~~iie~~~ 110 (207)
T PRK11832 82 --IPYKLISEGNCTGYHLPAKQTITLIEQNQ 110 (207)
T ss_pred --ceEEEEEcCccEEEEeeHHHHHHHHHHhc
Confidence 45789999999999999999999999854
No 38
>PF04831 Popeye: Popeye protein conserved region; InterPro: IPR006916 The Popeye (POP) family of proteins, is restricted to vertebrates and is preferentially expressed in developing and adult striated muscle. It is represented by a conserved region which includes three potential transmembrane domains []. The strong conservation of POP genes during evolution and their preferential expression in heart and skeletal muscle suggest that these novel proteins may have an important function in these tissues in vertebrates.; GO: 0016020 membrane
Probab=96.65 E-value=0.068 Score=50.38 Aligned_cols=107 Identities=14% Similarity=0.165 Sum_probs=83.0
Q ss_pred CCcHHHHHHHHhh-ceeEEecCCcEEEccC-CCcceEEEEEeeEEEEEEecCCeeeeeeeeecCCCCeecHHhHhhhcCC
Q 005042 482 NMDERLLDAICER-LKPSLCTEGTCVVREG-DPVVEMLLIIRGSLESVTTDGGRTGFYNRGMLKEGDFCGEELLTWALDP 559 (717)
Q Consensus 482 ~ls~~~l~~l~~~-l~~~~~~~ge~Ii~eG-d~~~~myfI~~G~v~v~~~~~g~e~~~~~~~l~~Gd~fGe~~l~~~l~~ 559 (717)
+.+....+.|+.+ .+.....+|+.-.-|| .+.+.+-++++|++++... |+- +..+.|-+|.....+. .-
T Consensus 14 ~Vs~~~Fk~iv~~~~~i~~L~~~~~YAvE~~T~~drLSlLLsGr~~Vs~~--g~f----LH~I~p~qFlDSPEW~---s~ 84 (153)
T PF04831_consen 14 KVSRQQFKKIVGCCCEIRTLKKGETYAVEGKTPIDRLSLLLSGRMRVSCD--GRF----LHYIYPYQFLDSPEWE---SL 84 (153)
T ss_pred CCCHHHHHHHHhhhceEEEecCCceeeecCCcccceEeEEEcCcEEEEEC--CEe----eEeecccccccChhhh---cc
Confidence 4688888888877 6777899999988888 5678999999999998853 332 7788888888776552 11
Q ss_pred CCCCCCCCcccEEEEcceeEEEEEcHHHHHHHHHhcHHH
Q 005042 560 KSVTNLPLSTRTVRALDEVEAFSLRAEELKFVASQFRRL 598 (717)
Q Consensus 560 ~~~~n~p~s~~tv~A~t~~el~~L~~~df~~ll~~~P~l 598 (717)
++ +.-..-..|+.|.++|..+..+++.+..++...|-+
T Consensus 85 ~~-s~~~~FQVTitA~~~Cryl~W~R~kL~~~l~~~~~L 122 (153)
T PF04831_consen 85 RP-SEDDKFQVTITAEEDCRYLCWPREKLYLLLAKDPFL 122 (153)
T ss_pred cc-CCCCeEEEEEEEcCCcEEEEEEHHHHHHHHhhCHHH
Confidence 11 111236789999999999999999999999998843
No 39
>KOG2302 consensus T-type voltage-gated Ca2+ channel, pore-forming alpha1I subunit [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=96.35 E-value=0.06 Score=63.27 Aligned_cols=89 Identities=18% Similarity=0.287 Sum_probs=55.9
Q ss_pred CCCCeeecCCChHHHH---------HHHHHHHHHHHHHhhhccccccccccCCccccccccchhHHHHHHHHHHHHHHHH
Q 005042 64 VSDKIIIDPQDRSLLF---------WNRLFVFTCFISVSIDPLFFYLPFFDKENYCLGMDVQLAAAITTFRSILDCIYSC 134 (717)
Q Consensus 64 ~~~~~ii~P~s~~~~~---------W~~~~li~~i~~~~v~Pl~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~Di~f~~ 134 (717)
.|.++++.|+++|+.. +|.++++.++++.+.+.+. -|-++..+. -.+++++-++++..+|++
T Consensus 1101 ~Ws~ylF~pQ~rFR~lc~~ii~hk~Fd~vVl~~IfLNcVtiale--rp~i~~~s~-------EriFltlsnyIFtaIfV~ 1171 (1956)
T KOG2302|consen 1101 LWSKYLFSPQNRFRVLCQNIIQHKAFDTVVLFFIFLNCVTIALE--RPAIVEGST-------ERIFLTLSNYIFTAIFVV 1171 (1956)
T ss_pred HHHHHhcCcccHHHHHHHHHHHHhhhhheehhhhhhhhHHHHhc--ccccccCcc-------eEEEEEecchHHHHHHHH
Confidence 4667799999999865 5556666667777766665 233322110 012334456889999999
Q ss_pred hHhhhce-eeEEcCCCcccCCCeEeeCHHHHHHHHHhh-hhHHHhh
Q 005042 135 RIPFQFR-TAYIAPSSRVFGRGELVVDPALISRRYFRR-LFLVDFL 178 (717)
Q Consensus 135 Di~l~F~-tay~~~~s~~~~~G~lV~d~~~Ia~rYl~~-~F~iDll 178 (717)
++.++-. .|.+- || ..|+++ |=.+|.+
T Consensus 1172 Em~lKVVALGl~f--------ge---------~aYl~ssWN~LDgf 1200 (1956)
T KOG2302|consen 1172 EMTLKVVALGLYF--------GE---------QAYLRSSWNVLDGF 1200 (1956)
T ss_pred HHHHHHHhhhhcc--------ch---------HHHHHHHHHhhhHH
Confidence 9988865 34332 33 369987 7666653
No 40
>KOG3542 consensus cAMP-regulated guanine nucleotide exchange factor [Signal transduction mechanisms]
Probab=96.01 E-value=0.0092 Score=67.13 Aligned_cols=114 Identities=22% Similarity=0.367 Sum_probs=88.8
Q ss_pred HHHHHHhccCcCCCCCcHHHHHHHHhhceeEEe-cCCcEEEccCCCcceEEEEEeeEEEEEEecCCeeeeeeeeecCCCC
Q 005042 468 HLCLNLVRRVPLFANMDERLLDAICERLKPSLC-TEGTCVVREGDPVVEMLLIIRGSLESVTTDGGRTGFYNRGMLKEGD 546 (717)
Q Consensus 468 ~l~~~lL~~iplF~~ls~~~l~~l~~~l~~~~~-~~ge~Ii~eGd~~~~myfI~~G~v~v~~~~~g~e~~~~~~~l~~Gd 546 (717)
+..++++.+.|.|.+|+-...+++|..|....+ ..|.+|+..|+.-+.-++|+.|+|++...+|.+ ..+.-|+
T Consensus 277 eqLLeFMhqlpAFAnmtMSvrReLC~vMvFaVVe~AGtivL~dgeeLDSWsVIlNG~VEv~~PdGk~------e~l~mGn 350 (1283)
T KOG3542|consen 277 EQLLEFMHQLPAFANMTMSVRRELCLVMVFAVVEDAGTIVLADGEELDSWSVILNGCVEVVKPDGKR------EELKMGN 350 (1283)
T ss_pred HHHHHHHHhchHhhcccHHHHHHHHHHHHHHHHhhcCeEEecCCcccceeEEEecceEEEecCCCce------EEeeccc
Confidence 344678889999999999999999998876544 679999999999999999999999999988875 4567799
Q ss_pred eecHHhHhhhcCCCCCCCCCCcccEE-EEcceeEEEEEcHHHHHHHHHhcH
Q 005042 547 FCGEELLTWALDPKSVTNLPLSTRTV-RALDEVEAFSLRAEELKFVASQFR 596 (717)
Q Consensus 547 ~fGe~~l~~~l~~~~~~n~p~s~~tv-~A~t~~el~~L~~~df~~ll~~~P 596 (717)
.||...- .+.+- -.--+ .-+.||+..+|...|+..++..--
T Consensus 351 SFG~~PT---~dkqy------m~G~mRTkVDDCqFVciaqqDycrIln~ve 392 (1283)
T KOG3542|consen 351 SFGAEPT---PDKQY------MIGEMRTKVDDCQFVCIAQQDYCRILNTVE 392 (1283)
T ss_pred ccCCCCC---cchhh------hhhhhheecccceEEEeehhhHHHHHHHHH
Confidence 9996522 11110 11112 347899999999999999986543
No 41
>PLN03223 Polycystin cation channel protein; Provisional
Probab=95.87 E-value=1.5 Score=54.25 Aligned_cols=31 Identities=13% Similarity=0.121 Sum_probs=22.1
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 005042 373 QEIIFSILIGIAGLVLLALLIGNMQTYLTSL 403 (717)
Q Consensus 373 ~E~~f~i~i~i~G~~lfa~lIg~~~~~l~~~ 403 (717)
+-..|..+++++..++.-++|+-|...++..
T Consensus 1395 GPIYFfSFILLV~FILLNMFIAII~DSFsEV 1425 (1634)
T PLN03223 1395 GMIYFYSYNIFVFMILFNFLLAIICDAFGEV 1425 (1634)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4456777777777777777777777776654
No 42
>KOG4404 consensus Tandem pore domain K+ channel TASK3/THIK-1 [Inorganic ion transport and metabolism]
Probab=95.86 E-value=0.055 Score=56.75 Aligned_cols=57 Identities=18% Similarity=0.324 Sum_probs=42.4
Q ss_pred HHHHHHHHHHhhccccCCCCccCch-------hH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 005042 348 LFYCLWFGLQNLSTLGQGLKTSTYI-------QE-IIFSILIGIAGLVLLALLIGNMQTYLTSLT 404 (717)
Q Consensus 348 Y~~slywal~tlttvGygd~~~~~~-------~E-~~f~i~i~i~G~~lfa~lIg~~~~~l~~~~ 404 (717)
|+.|+|+.+.|+||+|+||..+.-. .+ ..++.+.+++|+.+++.+++-+.--+..++
T Consensus 187 yfds~YyCFITltTIGFGDyValQ~~~alq~qplYv~~sf~fIL~Gl~vi~a~~NllvLrf~t~~ 251 (350)
T KOG4404|consen 187 YFDSYYYCFITLTTIGFGDYVALQQDAALQSQPLYVFFSFVFILLGLCVIYALLNLLVLRFMTMN 251 (350)
T ss_pred hhhhhheeeeeeeeccccchhhhcchhhhhCCCceehHhHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 6778999999999999999876433 23 346677778899888888766655554443
No 43
>KOG3193 consensus K+ channel subunit [Inorganic ion transport and metabolism]
Probab=94.81 E-value=0.042 Score=60.66 Aligned_cols=39 Identities=21% Similarity=0.320 Sum_probs=28.8
Q ss_pred HHHHHHHHHhhccccCCCCccCchhHHHHHHHHHHHHHH
Q 005042 349 FYCLWFGLQNLSTLGQGLKTSTYIQEIIFSILIGIAGLV 387 (717)
Q Consensus 349 ~~slywal~tlttvGygd~~~~~~~E~~f~i~i~i~G~~ 387 (717)
+.++|+.+.|++||||||..|....-.++.++++-+.++
T Consensus 219 f~s~y~v~vtfstvgygd~~pd~w~sql~~vi~icval~ 257 (1087)
T KOG3193|consen 219 FTSFYFVMVTFSTVGYGDWYPDYWASQLCVVILICVALG 257 (1087)
T ss_pred eeeEEEEEEEEeeccccccccccchhhHHHHHHHHHHHh
Confidence 346899999999999999999887666655544433333
No 44
>KOG3827 consensus Inward rectifier K+ channel [Inorganic ion transport and metabolism]
Probab=94.39 E-value=0.21 Score=53.77 Aligned_cols=61 Identities=18% Similarity=0.398 Sum_probs=46.2
Q ss_pred HHHHHHHHHHHHhhccccCCCCcc--CchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHH
Q 005042 346 SKLFYCLWFGLQNLSTLGQGLKTS--TYIQEIIFSILIGIAGLVLLALLIGNMQTYLTSLTVR 406 (717)
Q Consensus 346 ~~Y~~slywal~tlttvGygd~~~--~~~~E~~f~i~i~i~G~~lfa~lIg~~~~~l~~~~~~ 406 (717)
..+..||-|++-|=||+|||--.+ .-..-++..++=+|+|+++-|+++|.|-.=+..-.+|
T Consensus 111 ~sf~sAFLFSiETQtTIGYG~R~vTeeCP~aI~ll~~Q~I~g~ii~afm~G~i~aKiarPkKR 173 (400)
T KOG3827|consen 111 HSFTSAFLFSIETQTTIGYGFRYVTEECPEAIFLLVLQSILGVIINAFMVGAIFAKIARPKKR 173 (400)
T ss_pred cchhhhheeeeeeeeeeeccccccCccChHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCchhh
Confidence 345668888999999999997543 3456667777778999999999999887766544444
No 45
>KOG4404 consensus Tandem pore domain K+ channel TASK3/THIK-1 [Inorganic ion transport and metabolism]
Probab=94.12 E-value=0.0078 Score=62.91 Aligned_cols=48 Identities=19% Similarity=0.338 Sum_probs=41.6
Q ss_pred HHHHHHHHHHHHhhccccCCCCccCchhHHHHHHHHHHHHHHHHHHHH
Q 005042 346 SKLFYCLWFGLQNLSTLGQGLKTSTYIQEIIFSILIGIAGLVLLALLI 393 (717)
Q Consensus 346 ~~Y~~slywal~tlttvGygd~~~~~~~E~~f~i~i~i~G~~lfa~lI 393 (717)
-++.-||||+.+.+||+|||-.+|.|.+.++|+|+..++|+-+--..+
T Consensus 79 WkF~GaFYFa~TVItTIGyGhstP~T~~GK~Fcm~Yal~Gipl~lvmF 126 (350)
T KOG4404|consen 79 WKFAGAFYFATTVITTIGYGHSTPSTDGGKAFCMFYALVGIPLTLVMF 126 (350)
T ss_pred cccCcceEEEEEEEeeeccCCCCCCCcCceehhhhHHHhcCchHHHHH
Confidence 366779999999999999999999999999999999999875544433
No 46
>KOG1418 consensus Tandem pore domain K+ channel [Inorganic ion transport and metabolism]
Probab=91.51 E-value=0.042 Score=61.10 Aligned_cols=49 Identities=22% Similarity=0.322 Sum_probs=42.4
Q ss_pred HHHHHHHHHHHHhhccccCCCCccCchhHH--------HHHHHHHHHHHHHHHHHHH
Q 005042 346 SKLFYCLWFGLQNLSTLGQGLKTSTYIQEI--------IFSILIGIAGLVLLALLIG 394 (717)
Q Consensus 346 ~~Y~~slywal~tlttvGygd~~~~~~~E~--------~f~i~i~i~G~~lfa~lIg 394 (717)
--|+.|+|+++.++||+|+||+.|.+.... .+..+..++|...++.+.-
T Consensus 241 w~f~~~~Yf~fisltTIG~GD~vp~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~ 297 (433)
T KOG1418|consen 241 WSFIEAFYFSFISLTTIGFGDIVPRTLLGRFRREELVDPLASVWILSGLALLALVLL 297 (433)
T ss_pred eeeEeeeeEEEEEeeeecCCccccCCCcceeeccccccchhHHHHHhhhhHHHHHhh
Confidence 457889999999999999999999998765 5788888889988888773
No 47
>KOG0498 consensus K+-channel ERG and related proteins, contain PAS/PAC sensor domain [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=89.82 E-value=12 Score=44.66 Aligned_cols=42 Identities=26% Similarity=0.362 Sum_probs=34.1
Q ss_pred HhCChhHHHHHHHHHHHHHhc-----cCcCCCCCcHHHHHHHHhhce
Q 005042 455 QNLPKDLRRDIKRHLCLNLVR-----RVPLFANMDERLLDAICERLK 496 (717)
Q Consensus 455 ~~Lp~~Lr~~I~~~l~~~lL~-----~iplF~~ls~~~l~~l~~~l~ 496 (717)
++||++||+.|..+....... .-.++++++++..+.|+.++-
T Consensus 371 ~~LP~~LRqRi~~y~q~kw~~t~Gvdee~lL~~LP~~LR~dI~~hL~ 417 (727)
T KOG0498|consen 371 RQLPPDLRQRIRRYEQYKWLATRGVDEEELLQSLPKDLRRDIKRHLC 417 (727)
T ss_pred ccCCHHHHHHHHHHHHHHHhhccCcCHHHHHHhCCHHHHHHHHHHHh
Confidence 379999999999999877654 335778899999999988773
No 48
>KOG2301 consensus Voltage-gated Ca2+ channels, alpha1 subunits [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=86.63 E-value=9.5 Score=49.37 Aligned_cols=47 Identities=21% Similarity=0.458 Sum_probs=35.1
Q ss_pred hhHHHHHHHHHHHHHHHHhHhhhceeeEEcCCCcccCCCeEeeCHHHHHHHHHhh-hhHHHhhhccch
Q 005042 117 LAAAITTFRSILDCIYSCRIPFQFRTAYIAPSSRVFGRGELVVDPALISRRYFRR-LFLVDFLSVLPI 183 (717)
Q Consensus 117 ~~~~~~~~~~~~Di~f~~Di~l~F~tay~~~~s~~~~~G~lV~d~~~Ia~rYl~~-~F~iDlls~lPl 183 (717)
...++...+.++-.+|.+.|+++.-. | |-.. |++. |.++|++-+.--
T Consensus 870 ~~~~L~y~D~~Ft~iFt~Em~lK~ia-~----------Gf~~---------y~rn~w~~lDf~Vv~vs 917 (1592)
T KOG2301|consen 870 INGILEYADYIFTYIFTFEMLLKWIA-Y----------GFFF---------YFRNAWNWLDFVVVIVS 917 (1592)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHH-h----------HHHH---------HHhhHHhhhhHHHhhhH
Confidence 34577789999999999999999742 2 4221 9998 999999765543
No 49
>KOG3542 consensus cAMP-regulated guanine nucleotide exchange factor [Signal transduction mechanisms]
Probab=85.21 E-value=1.1 Score=51.06 Aligned_cols=106 Identities=17% Similarity=0.213 Sum_probs=76.9
Q ss_pred ChhHHHHHHHHHHHHHhccCcCCCCCcHHHHHHHHhhceeEEecCCcEEEccCCCcceEEEEEeeEEEEEEecCCeeeee
Q 005042 458 PKDLRRDIKRHLCLNLVRRVPLFANMDERLLDAICERLKPSLCTEGTCVVREGDPVVEMLLIIRGSLESVTTDGGRTGFY 537 (717)
Q Consensus 458 p~~Lr~~I~~~l~~~lL~~iplF~~ls~~~l~~l~~~l~~~~~~~ge~Ii~eGd~~~~myfI~~G~v~v~~~~~g~e~~~ 537 (717)
|+.|+.-....--...|.+...|.++-...++++|...+...++.+.++++.|+.+..-|++++|.|-+..
T Consensus 23 ~~~~~t~~~~rN~~~~lh~ld~~snl~~~~lk~l~~~aryer~~g~~ilf~~~~var~wyillsgsv~v~g--------- 93 (1283)
T KOG3542|consen 23 PPHLRTPDDIRNVYEQLHQLDTFSNLFIGPLKALCKTARYERHPGQYILFRDGDVARSWYILLSGSVFVEG--------- 93 (1283)
T ss_pred CcccCChhhhhhHHHHHhhhhhhhhhhhhhHHHhhhhhhhhcCCCceEEecccchhhheeeeeccceEeec---------
Confidence 34444333333334466777888899999999999999999999999999999999999999999986542
Q ss_pred eeeecCCCCeecHHhHhhhcCCCCCCCCCCcccEEEEcceeEEEEEcHH
Q 005042 538 NRGMLKEGDFCGEELLTWALDPKSVTNLPLSTRTVRALDEVEAFSLRAE 586 (717)
Q Consensus 538 ~~~~l~~Gd~fGe~~l~~~l~~~~~~n~p~s~~tv~A~t~~el~~L~~~ 586 (717)
...-|-.+||-. .++. ++.++-.++++|..+++..
T Consensus 94 --qi~mp~~~fgkr------~g~~------r~~nclllq~semivid~~ 128 (1283)
T KOG3542|consen 94 --QIYMPYGCFGKR------TGQN------RTHNCLLLQESEMIVIDYP 128 (1283)
T ss_pred --ceecCccccccc------cccc------cccceeeecccceeeeecC
Confidence 122344466653 1111 7788888889998888543
No 50
>KOG2302 consensus T-type voltage-gated Ca2+ channel, pore-forming alpha1I subunit [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=80.44 E-value=1.5e+02 Score=36.39 Aligned_cols=58 Identities=10% Similarity=0.336 Sum_probs=38.4
Q ss_pred HHHHHHHHHHHHHHhhhccccccccccCCcccccccc--chhHHHHHHHHHHHHHHHHhHhhhce-eeEE
Q 005042 79 FWNRLFVFTCFISVSIDPLFFYLPFFDKENYCLGMDV--QLAAAITTFRSILDCIYSCRIPFQFR-TAYI 145 (717)
Q Consensus 79 ~W~~~~li~~i~~~~v~Pl~~~~~~~~~~~~c~~~~~--~~~~~~~~~~~~~Di~f~~Di~l~F~-tay~ 145 (717)
+++.+-+++++++.+..-+| -| |-+++- +--..+..++-++-+||.++|+++.. .|.+
T Consensus 80 wfe~vsmlvillncvtlgmf--rp-------ced~~c~s~rc~ilqafddfifaffavemv~kmvalgif 140 (1956)
T KOG2302|consen 80 WFECVSMLVILLNCVTLGMF--RP-------CEDMDCLSDRCKILQAFDDFIFAFFAVEMVLKMVALGIF 140 (1956)
T ss_pred HHHHHHHHHHHHhhhhhccc--cc-------chhcccchhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 35667777777777776554 22 333332 12236778999999999999999976 4443
No 51
>KOG3676 consensus Ca2+-permeable cation channel OSM-9 and related channels (OTRPC family) [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=77.72 E-value=1.7e+02 Score=35.24 Aligned_cols=73 Identities=25% Similarity=0.369 Sum_probs=53.8
Q ss_pred ccccCCCCccCc------hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHH-HHHHHHHHHHHHHHHhCCCCHHHHH
Q 005042 360 STLGQGLKTSTY------IQEIIFSILIGIAGLVLLALLIGNMQTYLTSLTVRL-EEMRIKRRDSEQWMHHRWLPQDLRE 432 (717)
Q Consensus 360 ttvGygd~~~~~------~~E~~f~i~i~i~G~~lfa~lIg~~~~~l~~~~~~~-~e~~~k~~~~~~~m~~~~lp~~L~~ 432 (717)
.|+|+||..... ..-++|.+++.++-+.++-.+|+-|++......... ++|+.+...+ --|-.+.+|+.++.
T Consensus 601 ftig~~dl~~~~~~~~~~~~kilfv~y~ilv~ILllNMLIAMMg~Ty~~Va~~s~~~Wk~Q~A~~-iL~lErs~p~~~r~ 679 (782)
T KOG3676|consen 601 FTIGMGDLEACENTDYPVLFKILFVAYMILVTILLLNMLIAMMGNTYETVAQESEKEWKLQWAAT-ILMLERSLPPALRK 679 (782)
T ss_pred HhhhhhhhhhcccccchHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhHHHHHHHHHHHH-HHHHHhcCCHHHHH
Confidence 478999876433 345677778888888888899999998887776665 7777665544 34556888888887
Q ss_pred H
Q 005042 433 R 433 (717)
Q Consensus 433 r 433 (717)
|
T Consensus 680 ~ 680 (782)
T KOG3676|consen 680 R 680 (782)
T ss_pred H
Confidence 7
No 52
>COG4709 Predicted membrane protein [Function unknown]
Probab=77.65 E-value=9.8 Score=37.34 Aligned_cols=71 Identities=21% Similarity=0.315 Sum_probs=55.1
Q ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHHHHhhh--cCCCHHHHHHhC--ChhHHHHHHHHHHHHHhccCcCCCCCcHH
Q 005042 414 RRDSEQWMHHRWLPQDLRERVRRYDHFKWLET--RGVDEEHLVQNL--PKDLRRDIKRHLCLNLVRRVPLFANMDER 486 (717)
Q Consensus 414 ~~~~~~~m~~~~lp~~L~~rV~~y~~y~w~~~--~~~de~~ll~~L--p~~Lr~~I~~~l~~~lL~~iplF~~ls~~ 486 (717)
++++++|++ .+|++.+..+..||+-++.+. .|.+|+++..+| |+++-+|+..+.-.+-.+.-|-+.+....
T Consensus 7 L~eL~~yL~--~Lp~~~r~e~m~dyeehF~~a~~~GksE~EI~~~LG~P~eiA~ei~s~~~~k~~~~~~~~~n~~~a 81 (195)
T COG4709 7 LNELEQYLE--GLPREERREIMYDYEEHFREAQEAGKSEEEIAKDLGDPKEIAAEILSERGIKKEEVKPTQKNVRRA 81 (195)
T ss_pred HHHHHHHHH--hCCHHHHHHHHHHHHHHHHhhhhcCCCHHHHHHHhCCHHHHHHHHHHHccchHHhccCcccchHHH
Confidence 566778874 899999999999998877753 678899999987 66787888777766666666777665554
No 53
>KOG3614 consensus Ca2+/Mg2+-permeable cation channels (LTRPC family) [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=74.99 E-value=2.5e+02 Score=35.87 Aligned_cols=67 Identities=15% Similarity=0.143 Sum_probs=35.6
Q ss_pred HHHHHHHHhhhhHHHhhhccchhhhhhheeecCccchhhhhhhhhhHHHHHhHhhhhhhhhhhhhhhhhh
Q 005042 162 ALISRRYFRRLFLVDFLSVLPIPQLLVSVYLSDTRAKVFSTKEALPLLIILQYVPRILRIFPLISELKKT 231 (717)
Q Consensus 162 ~~Ia~rYl~~~F~iDlls~lPl~~i~~~~~~~~~~~~~~~~~~~Lrli~l~q~l~Rl~ri~~l~~~l~~~ 231 (717)
++++--+-..|+.+|+++++-|..=+..-..|.. ....-+++-.+-++-.-.||+.++.+.+.+--+
T Consensus 853 ~kv~v~f~d~wN~~d~~ai~~F~vG~~~Rl~~~~---~~~~GRvIl~~d~i~~t~rLl~~f~V~~~lGPy 919 (1381)
T KOG3614|consen 853 QKVRVYFADFWNLIDLLAILLFLVGPVLRLLPID---SIYSGRVILCFDFILFTLRLLHYFTVSKQLGPY 919 (1381)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHhhhheeEecCcc---ceecceeeeeehHHHHHHHHhhheeeccccCch
Confidence 4554444455999999999988665554445421 111111111111111245788888777665443
No 54
>PF08006 DUF1700: Protein of unknown function (DUF1700); InterPro: IPR012963 This family contains many hypothetical bacterial proteins and two putative membrane proteins (Q6GFD0 from SWISSPROT and Q6G806 from SWISSPROT).
Probab=73.64 E-value=17 Score=35.66 Aligned_cols=55 Identities=25% Similarity=0.495 Sum_probs=44.0
Q ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHHHHhh--hcCCCHHHHHHhC--ChhHHHHHHHHHH
Q 005042 414 RRDSEQWMHHRWLPQDLRERVRRYDHFKWLE--TRGVDEEHLVQNL--PKDLRRDIKRHLC 470 (717)
Q Consensus 414 ~~~~~~~m~~~~lp~~L~~rV~~y~~y~w~~--~~~~de~~ll~~L--p~~Lr~~I~~~l~ 470 (717)
+++++++++ ++|++-++.+.+||+-...+ ..|.+|++++++| |.++-+++..+..
T Consensus 7 L~~L~~~L~--~lp~~e~~e~l~~Y~e~f~d~~~~G~sEeeii~~LG~P~~iA~~i~~~~~ 65 (181)
T PF08006_consen 7 LNELEKYLK--KLPEEEREEILEYYEEYFDDAGEEGKSEEEIIAELGSPKEIAREILAEYS 65 (181)
T ss_pred HHHHHHHHH--cCCHHHHHHHHHHHHHHHHHhhhCCCCHHHHHHHcCCHHHHHHHHHHhhh
Confidence 567788886 59999999999999888775 4678899999997 6677777765543
No 55
>PF07883 Cupin_2: Cupin domain; InterPro: IPR013096 This family represents the conserved barrel domain of the cupin superfamily [] (cupa is the Latin term for a small barrel). ; PDB: 2OPK_C 3BU7_B 2PHD_D 3NVC_A 3NKT_A 3NJZ_A 3NW4_A 3NST_A 3NL1_A 2H0V_A ....
Probab=66.95 E-value=7.7 Score=31.12 Aligned_cols=44 Identities=25% Similarity=0.326 Sum_probs=32.8
Q ss_pred EEecCCcEEEccCCCcc-eEEEEEeeEEEEEEecCCeeeeeeeeecCCCCee
Q 005042 498 SLCTEGTCVVREGDPVV-EMLLIIRGSLESVTTDGGRTGFYNRGMLKEGDFC 548 (717)
Q Consensus 498 ~~~~~ge~Ii~eGd~~~-~myfI~~G~v~v~~~~~g~e~~~~~~~l~~Gd~f 548 (717)
..++||+..-..-.+.. ++++|++|.+.+. .++ + ...+++||.+
T Consensus 3 ~~~~pG~~~~~h~H~~~~e~~~vl~G~~~~~-~~~-~-----~~~l~~Gd~~ 47 (71)
T PF07883_consen 3 VTLPPGGSIPPHRHPGEDEFFYVLSGEGTLT-VDG-E-----RVELKPGDAI 47 (71)
T ss_dssp EEEETTEEEEEEEESSEEEEEEEEESEEEEE-ETT-E-----EEEEETTEEE
T ss_pred EEECCCCCCCCEECCCCCEEEEEEECCEEEE-Ecc-E-----EeEccCCEEE
Confidence 46788887666555666 9999999999887 333 3 4678899876
No 56
>PF14377 DUF4414: Domain of unknown function (DUF4414)
Probab=65.32 E-value=11 Score=33.84 Aligned_cols=45 Identities=27% Similarity=0.454 Sum_probs=34.9
Q ss_pred CCCCHHHHHHHHHHHHHHHhh----------hcCCCHHHHHHhCChhHHHHHHHH
Q 005042 424 RWLPQDLRERVRRYDHFKWLE----------TRGVDEEHLVQNLPKDLRRDIKRH 468 (717)
Q Consensus 424 ~~lp~~L~~rV~~y~~y~w~~----------~~~~de~~ll~~Lp~~Lr~~I~~~ 468 (717)
.-||+++|+.|..++.-.-.. ....|.-.+|..||++||++|...
T Consensus 51 ~ALP~diR~EVl~qe~~~~~~~~~~~~~~~~~~~~d~asflatl~p~LR~evL~~ 105 (108)
T PF14377_consen 51 AALPPDIREEVLAQERRERRRQERQQNARQHPQEMDNASFLATLPPELRREVLLD 105 (108)
T ss_pred HhCCHHHHHHHHHHHHHHHHHhhhccccccCCCCCCHHHHHHhCCHHHHHHHhhc
Confidence 368999999999988755331 223567899999999999999764
No 57
>TIGR03037 anthran_nbaC 3-hydroxyanthranilate 3,4-dioxygenase. Members of this protein family, from both bacteria and eukaryotes, are the enzyme 3-hydroxyanthranilate 3,4-dioxygenase. This enzyme acts on the tryptophan metabolite 3-hydroxyanthranilate and produces 2-amino-3-carboxymuconate semialdehyde, which can rearrange spontaneously to quinolinic acid and feed into nicotinamide biosynthesis, or undergo further enzymatic degradation.
Probab=64.76 E-value=15 Score=35.38 Aligned_cols=64 Identities=16% Similarity=0.263 Sum_probs=43.3
Q ss_pred EccCCCcceEEEEEeeEEEEEEecCCeeeeeeeeecCCCCeecHHhHhhhcCCCCCCCCCCcccEEEEcceeEEEEEcHH
Q 005042 507 VREGDPVVEMLLIIRGSLESVTTDGGRTGFYNRGMLKEGDFCGEELLTWALDPKSVTNLPLSTRTVRALDEVEAFSLRAE 586 (717)
Q Consensus 507 i~eGd~~~~myfI~~G~v~v~~~~~g~e~~~~~~~l~~Gd~fGe~~l~~~l~~~~~~n~p~s~~tv~A~t~~el~~L~~~ 586 (717)
.+.. ..++++++++|.+.+...++|+.. ...+++||+|= + |.. ...+-++.++|.++.|.+.
T Consensus 43 ~H~~-~tdE~FyqleG~~~l~v~d~g~~~---~v~L~eGd~fl-------v-P~g------vpHsP~r~~~t~~LvIE~~ 104 (159)
T TIGR03037 43 FHDD-PGEEFFYQLKGEMYLKVTEEGKRE---DVPIREGDIFL-------L-PPH------VPHSPQRPAGSIGLVIERK 104 (159)
T ss_pred cccC-CCceEEEEEcceEEEEEEcCCcEE---EEEECCCCEEE-------e-CCC------CCcccccCCCcEEEEEEeC
Confidence 4443 379999999999998877766422 46899999983 2 221 2334555678888888765
Q ss_pred HH
Q 005042 587 EL 588 (717)
Q Consensus 587 df 588 (717)
.-
T Consensus 105 r~ 106 (159)
T TIGR03037 105 RP 106 (159)
T ss_pred CC
Confidence 43
No 58
>PRK13290 ectC L-ectoine synthase; Reviewed
Probab=64.39 E-value=28 Score=32.18 Aligned_cols=69 Identities=16% Similarity=0.135 Sum_probs=43.0
Q ss_pred eEEecCCcEEEccCCCcceEEEEEeeEEEEEEecCCeeeeeeeeecCCCCeecHHhHhhhcCCCCCCCCCCcccEEEEcc
Q 005042 497 PSLCTEGTCVVREGDPVVEMLLIIRGSLESVTTDGGRTGFYNRGMLKEGDFCGEELLTWALDPKSVTNLPLSTRTVRALD 576 (717)
Q Consensus 497 ~~~~~~ge~Ii~eGd~~~~myfI~~G~v~v~~~~~g~e~~~~~~~l~~Gd~fGe~~l~~~l~~~~~~n~p~s~~tv~A~t 576 (717)
...++||..+-.--....++++|++|++++...++|+ ...+.+||.+-- ++. ....+++.+
T Consensus 39 ~~~l~pG~~~~~h~h~~~E~~yVL~G~~~~~~i~~g~-----~~~L~aGD~i~~-------~~~-------~~H~~~N~e 99 (125)
T PRK13290 39 ETTIYAGTETHLHYKNHLEAVYCIEGEGEVEDLATGE-----VHPIRPGTMYAL-------DKH-------DRHYLRAGE 99 (125)
T ss_pred EEEECCCCcccceeCCCEEEEEEEeCEEEEEEcCCCE-----EEEeCCCeEEEE-------CCC-------CcEEEEcCC
Confidence 3467888755332222247999999999877333344 468999998752 221 234455558
Q ss_pred eeEEEEEc
Q 005042 577 EVEAFSLR 584 (717)
Q Consensus 577 ~~el~~L~ 584 (717)
+++++.+-
T Consensus 100 ~~~~l~v~ 107 (125)
T PRK13290 100 DMRLVCVF 107 (125)
T ss_pred CEEEEEEE
Confidence 88877653
No 59
>KOG2301 consensus Voltage-gated Ca2+ channels, alpha1 subunits [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=56.42 E-value=5.8e+02 Score=33.89 Aligned_cols=52 Identities=19% Similarity=0.398 Sum_probs=35.4
Q ss_pred ccchhHHHHHHHHHHHHHHHHhHhhhceeeEEcCCCcccCCCeEeeCHHHHHHHHHhh-hhHHHhhhccchhhh
Q 005042 114 DVQLAAAITTFRSILDCIYSCRIPFQFRTAYIAPSSRVFGRGELVVDPALISRRYFRR-LFLVDFLSVLPIPQL 186 (717)
Q Consensus 114 ~~~~~~~~~~~~~~~Di~f~~Di~l~F~tay~~~~s~~~~~G~lV~d~~~Ia~rYl~~-~F~iDlls~lPl~~i 186 (717)
...+.....+.+.++-.+|.+++.++... .++ +.|.++ |.++|++-+. +..+
T Consensus 468 ~~~~~~~l~~~~~vF~~lF~~Em~~ki~a--l~~------------------~~yF~~~~n~fD~~iv~-l~~~ 520 (1592)
T KOG2301|consen 468 TKARNYLLYLGNVVFTGLFTVEMILKIYA--LGP------------------RNYFRRGWNIFDLIIVL-LSLL 520 (1592)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHH--cCc------------------HHHHhhhcchheEEEEe-hhhH
Confidence 33445667778888888899999888641 121 357766 8899988777 4443
No 60
>PF13314 DUF4083: Domain of unknown function (DUF4083)
Probab=56.35 E-value=52 Score=25.94 Aligned_cols=47 Identities=13% Similarity=0.200 Sum_probs=25.8
Q ss_pred hHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHhhHHH---HHHHHHHHHHHHHHH
Q 005042 373 QEIIFSI---LIGIAGLVLLALLIGNMQTYLTSLTVRL---EEMRIKRRDSEQWMH 422 (717)
Q Consensus 373 ~E~~f~i---~i~i~G~~lfa~lIg~~~~~l~~~~~~~---~e~~~k~~~~~~~m~ 422 (717)
+..+|.+ .+.+++.+.|+.+ +-.++++.+.+. .++++|++.+-+.+.
T Consensus 4 ~~~Iy~~~Vi~l~vl~~~~Ftl~---IRri~~~s~~kkq~~~~~eqKLDrIIeLLE 56 (58)
T PF13314_consen 4 GDLIYYILVIILIVLFGASFTLF---IRRILINSNAKKQDVDSMEQKLDRIIELLE 56 (58)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH---HHHHHHhccccccchhHHHHHHHHHHHHHc
Confidence 3445555 3344444445443 455555543333 368889988877654
No 61
>PRK13264 3-hydroxyanthranilate 3,4-dioxygenase; Provisional
Probab=55.72 E-value=27 Score=34.23 Aligned_cols=62 Identities=15% Similarity=0.253 Sum_probs=43.2
Q ss_pred CCcceEEEEEeeEEEEEEecCCeeeeeeeeecCCCCeecHHhHhhhcCCCCCCCCCCcccEEEEcceeEEEEEcHHHHH
Q 005042 511 DPVVEMLLIIRGSLESVTTDGGRTGFYNRGMLKEGDFCGEELLTWALDPKSVTNLPLSTRTVRALDEVEAFSLRAEELK 589 (717)
Q Consensus 511 d~~~~myfI~~G~v~v~~~~~g~e~~~~~~~l~~Gd~fGe~~l~~~l~~~~~~n~p~s~~tv~A~t~~el~~L~~~df~ 589 (717)
++.++++++++|.+.+...++|+.. ...+++||+|= + +.. ...+-++.++|..+.+.+..-.
T Consensus 52 ~~tdE~FyqleG~~~l~v~d~g~~~---~v~L~eGd~fl-------l-P~g------vpHsP~r~~~tv~LviE~~r~~ 113 (177)
T PRK13264 52 DPGEEFFYQLEGDMYLKVQEDGKRR---DVPIREGEMFL-------L-PPH------VPHSPQREAGSIGLVIERKRPE 113 (177)
T ss_pred CCCceEEEEECCeEEEEEEcCCcee---eEEECCCCEEE-------e-CCC------CCcCCccCCCeEEEEEEeCCCC
Confidence 5678999999999998887766422 46799999982 2 221 2233455688999998776443
No 62
>PF00060 Lig_chan: Ligand-gated ion channel; InterPro: IPR001320 The ability of synapses to modify their synaptic strength in response to activity is a fundamental property of the nervous system and may be an essential component of learning and memory. There are three classes of ionotropic glutamate receptor, namely NMDA (N-methyl-D-aspartate), AMPA (alpha-amino-3-hydroxy-5-methyl-4-isoxazole-4-propionic acid) and kainate receptors. They are believed to play critical roles in synaptic plasticity. At many synapses in the brain, transient activation of NMDA receptors leads to a persistent modification in the strength of synaptic transmission mediated by AMPA receptors and kainate receptors can act as the induction trigger for long-term changes in synaptic transmission [].; GO: 0004970 ionotropic glutamate receptor activity, 0005234 extracellular-glutamate-gated ion channel activity, 0016020 membrane; PDB: 3FAT_A 3KFM_A 3KEI_A 3EN3_A 3EPE_B 3FAS_A 2F34_A 3C34_B 3S2V_A 3GBB_B ....
Probab=53.24 E-value=14 Score=34.29 Aligned_cols=76 Identities=14% Similarity=0.164 Sum_probs=50.3
Q ss_pred chHHHHHHHHHHHHHhhccccCCCCccCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHH
Q 005042 343 QFLSKLFYCLWFGLQNLSTLGQGLKTSTYIQEIIFSILIGIAGLVLLALLIGNMQTYLTSLTVRLEEMRIKRRDSEQWMH 422 (717)
Q Consensus 343 ~~~~~Y~~slywal~tlttvGygd~~~~~~~E~~f~i~i~i~G~~lfa~lIg~~~~~l~~~~~~~~e~~~k~~~~~~~m~ 422 (717)
........++|+.+.+++. +-++..|.....+++.+++.++++++.+..-|++.+++..-... ...+.+++..+
T Consensus 40 ~~~~~~~~~~~~~~~~~~~-q~~~~~~~s~s~Ril~~~w~l~~lil~~~Yta~L~s~Lt~~~~~-----~~i~sl~dL~~ 113 (148)
T PF00060_consen 40 RWRFSLSNSFWYTFGTLLQ-QGSSIRPRSWSGRILLAFWWLFSLILIASYTANLTSFLTVPKYE-----PPIDSLEDLAN 113 (148)
T ss_dssp -HHHHHHHHHHHCCCCCHH-HHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHT-----SS-SSHHHHHT
T ss_pred cCcccHHHHHHHHHHhhcc-ccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCcC-----CCCCCHHHHHH
Confidence 3445667788888877765 33568899999999999999999999999999999998654321 22444555555
Q ss_pred hC
Q 005042 423 HR 424 (717)
Q Consensus 423 ~~ 424 (717)
+.
T Consensus 114 ~~ 115 (148)
T PF00060_consen 114 SG 115 (148)
T ss_dssp HS
T ss_pred CC
Confidence 44
No 63
>PLN03192 Voltage-dependent potassium channel; Provisional
Probab=51.48 E-value=5.5e+02 Score=31.60 Aligned_cols=43 Identities=7% Similarity=0.134 Sum_probs=31.1
Q ss_pred CCCCHHHHHHHHHHHHHHHhhhcCCCHHHHHHhCChhHHHHHHHHHHH
Q 005042 424 RWLPQDLRERVRRYDHFKWLETRGVDEEHLVQNLPKDLRRDIKRHLCL 471 (717)
Q Consensus 424 ~~lp~~L~~rV~~y~~y~w~~~~~~de~~ll~~Lp~~Lr~~I~~~l~~ 471 (717)
.+||+.||..|..++..... ..-.+++.++++...++...+..
T Consensus 357 ~~Lp~~Lr~~i~~~l~~~~l-----~~~~lF~~~s~~~l~~L~~~~~~ 399 (823)
T PLN03192 357 DQLPKSICKSICQHLFLPVV-----EKVYLFKGVSREILLLLVTKMKA 399 (823)
T ss_pred HHcCHHHHHHHHHHHHHHHH-----hhCcchhcCCHHHHHHHHHhhhe
Confidence 47999999999887754433 23357888888888887766643
No 64
>TIGR00870 trp transient-receptor-potential calcium channel protein. after chronic exposure to capsaicin. (McCleskey and Gold, 1999).
Probab=47.59 E-value=5.9e+02 Score=30.81 Aligned_cols=46 Identities=22% Similarity=0.314 Sum_probs=32.9
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHH-HHHHHHHHHH
Q 005042 371 YIQEIIFSILIGIAGLVLLALLIGNMQTYLTSLTVR-LEEMRIKRRD 416 (717)
Q Consensus 371 ~~~E~~f~i~i~i~G~~lfa~lIg~~~~~l~~~~~~-~~e~~~k~~~ 416 (717)
..+-.+|.++..+.-+++.=++|+-|....+..... .++|+-.+-.
T Consensus 586 ~~~~il~~~y~~i~~ilLlNlLIAmm~~t~~~v~~~~~~~wk~~r~~ 632 (743)
T TIGR00870 586 FVGLLLFGAYNVIMYILLLNMLIAMMGNTYQLIADDADEEWKFQRAK 632 (743)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhhHHHHHHHHHH
Confidence 456677777777888888888888888888776544 5566655443
No 65
>PF10011 DUF2254: Predicted membrane protein (DUF2254); InterPro: IPR018723 Members of this family of proteins comprises various hypothetical and putative membrane proteins. Their exact function, has not, as yet, been defined.
Probab=46.00 E-value=96 Score=34.26 Aligned_cols=61 Identities=16% Similarity=0.240 Sum_probs=44.4
Q ss_pred HHHHHHHHHHHHHhhccccCCCCccCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhH
Q 005042 345 LSKLFYCLWFGLQNLSTLGQGLKTSTYIQEIIFSILIGIAGLVLLALLIGNMQTYLTSLTV 405 (717)
Q Consensus 345 ~~~Y~~slywal~tlttvGygd~~~~~~~E~~f~i~i~i~G~~lfa~lIg~~~~~l~~~~~ 405 (717)
.--|+.+|-+++..+.+++-++....-..-..+++++.++++++|-+.|.++...+|--+.
T Consensus 98 Lg~Figtfvy~l~~l~~i~~~~~~~~p~~~~~~a~~l~i~~v~~li~fI~~i~~~iqv~~i 158 (371)
T PF10011_consen 98 LGTFIGTFVYSLLVLIAIRSGDYGSVPRLSVFIALALAILSVVLLIYFIHHIARSIQVSNI 158 (371)
T ss_pred HHHHHHHHHHHHHHHHHccccccccCcchHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHH
Confidence 4456777777777777777665532222338889999999999999999999988865443
No 66
>KOG3609 consensus Receptor-activated Ca2+-permeable cation channels (STRPC family) [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=45.09 E-value=3e+02 Score=33.36 Aligned_cols=55 Identities=27% Similarity=0.420 Sum_probs=27.9
Q ss_pred HHHHHHHHHhhccccCCCCc-----cCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 005042 349 FYCLWFGLQNLSTLGQGLKT-----STYIQEIIFSILIGIAGLVLLALLIGNMQTYLTSL 403 (717)
Q Consensus 349 ~~slywal~tlttvGygd~~-----~~~~~E~~f~i~i~i~G~~lfa~lIg~~~~~l~~~ 403 (717)
..+++|++-.++-++--++. ..+.++.+|.+--++.=+++.-++|+-|.+-.|.+
T Consensus 555 ~~tLFWsiFglv~~~~~~l~~~Hkf~e~ig~~lfG~Y~vi~vIVLLNmLIAMmnnSyQeI 614 (822)
T KOG3609|consen 555 SKTLFWSIFGLVVLGSVVLPYKHKFTEFIGEVLFGVYNVILIIVLLNLLIAMMSNSYQEI 614 (822)
T ss_pred HHHHHHHHHhcccccceecccchhHHHHHHHHHHHhhheeeHHHHHHHHHHHHHhHHHHH
Confidence 35789999777655433332 12334444444444444444445555555544444
No 67
>PF05899 Cupin_3: Protein of unknown function (DUF861); InterPro: IPR008579 The function of the proteins in this entry are unknown. They contain the conserved barrel domain of the 'cupin' superfamily and members are specific to plants and bacteria.; PDB: 1RC6_A 3MYX_A 1O5U_A 2K9Z_A 1LKN_A 3ES4_A 1SFN_B 3BCW_A.
Probab=43.89 E-value=36 Score=28.14 Aligned_cols=42 Identities=21% Similarity=0.290 Sum_probs=28.9
Q ss_pred ecCCcEEEccCCCcceEEEEEeeEEEEEEecCCeeeeeeeeecCCCCeec
Q 005042 500 CTEGTCVVREGDPVVEMLLIIRGSLESVTTDGGRTGFYNRGMLKEGDFCG 549 (717)
Q Consensus 500 ~~~ge~Ii~eGd~~~~myfI~~G~v~v~~~~~g~e~~~~~~~l~~Gd~fG 549 (717)
..||..-..-. .+++.+|++|.+.+... +|. ...+++||.|-
T Consensus 14 ~~pg~~~~~~~--~~E~~~vleG~v~it~~-~G~-----~~~~~aGD~~~ 55 (74)
T PF05899_consen 14 CTPGKFPWPYP--EDEFFYVLEGEVTITDE-DGE-----TVTFKAGDAFF 55 (74)
T ss_dssp EECEEEEEEES--SEEEEEEEEEEEEEEET-TTE-----EEEEETTEEEE
T ss_pred ECCceeEeeCC--CCEEEEEEEeEEEEEEC-CCC-----EEEEcCCcEEE
Confidence 45555443332 28899999999988755 454 36789999873
No 68
>KOG3599 consensus Ca2+-modulated nonselective cation channel polycystin [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=42.97 E-value=7.2e+02 Score=30.53 Aligned_cols=23 Identities=0% Similarity=-0.090 Sum_probs=16.4
Q ss_pred HHHHHHHHHHHHHHHHhHhhhce
Q 005042 119 AAITTFRSILDCIYSCRIPFQFR 141 (717)
Q Consensus 119 ~~~~~~~~~~Di~f~~Di~l~F~ 141 (717)
..|.++|+++.++.++-+++.-.
T Consensus 498 s~wN~ld~~i~~ls~~~~~~~~~ 520 (798)
T KOG3599|consen 498 SKWNWLDLAIVLLSVVLLVLMIT 520 (798)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHH
Confidence 46677888888887777766643
No 69
>smart00835 Cupin_1 Cupin. This family represents the conserved barrel domain of the 'cupin' superfamily ('cupa' is the Latin term for a small barrel). This family contains 11S and 7S plant seed storage proteins, and germins. Plant seed storage proteins provide the major nitrogen source for the developing plant.
Probab=38.22 E-value=78 Score=29.68 Aligned_cols=53 Identities=23% Similarity=0.300 Sum_probs=36.4
Q ss_pred ceeEEecCCcEEEccCCC-cceEEEEEeeEEEEEEecC-CeeeeeeeeecCCCCeec
Q 005042 495 LKPSLCTEGTCVVREGDP-VVEMLLIIRGSLESVTTDG-GRTGFYNRGMLKEGDFCG 549 (717)
Q Consensus 495 l~~~~~~~ge~Ii~eGd~-~~~myfI~~G~v~v~~~~~-g~e~~~~~~~l~~Gd~fG 549 (717)
+....+.+|...-..-.+ .+++++|++|...+...+. +++.. ...+.+||.+-
T Consensus 32 ~~~~~i~pg~~~~~h~H~~~~e~~~Vl~G~~~~~~~~~~~~~~~--~~~l~~GD~~~ 86 (146)
T smart00835 32 AARVNLEPGGMLPPHYHPRATELLYVVRGEGRVGVVDPNGNKVY--DARLREGDVFV 86 (146)
T ss_pred EEEEEecCCcCcCCeeCCCCCEEEEEEeCeEEEEEEeCCCCeEE--EEEecCCCEEE
Confidence 344567888876544433 5789999999998876433 33333 57899999874
No 70
>PF07697 7TMR-HDED: 7TM-HD extracellular; InterPro: IPR011624 This entry represents the extracellular domain of the 7TM-HD (7TM Receptors with HD hydrolase) protein family []. These proteins are known or predicted, to posses metal-dependent phospohydrolase activity.
Probab=37.67 E-value=1.2e+02 Score=30.20 Aligned_cols=33 Identities=21% Similarity=0.404 Sum_probs=28.1
Q ss_pred CCcHHHHHHHHhhceeEE--ecCCcEEEccCCCcc
Q 005042 482 NMDERLLDAICERLKPSL--CTEGTCVVREGDPVV 514 (717)
Q Consensus 482 ~ls~~~l~~l~~~l~~~~--~~~ge~Ii~eGd~~~ 514 (717)
..++...++......+.. +.+|+.|+++|+..+
T Consensus 173 ~~T~~~~~~a~~~V~pv~~~V~~Ge~IV~kGe~VT 207 (222)
T PF07697_consen 173 EATEKAREEALASVSPVRGMVKKGEVIVRKGEIVT 207 (222)
T ss_pred HHHHHHHHHHHhcCCchHhhccCCCEEecCCcEeC
Confidence 456777888888888887 999999999999765
No 71
>COG1917 Uncharacterized conserved protein, contains double-stranded beta-helix domain [Function unknown]
Probab=34.76 E-value=79 Score=28.93 Aligned_cols=50 Identities=16% Similarity=0.189 Sum_probs=38.9
Q ss_pred ceeEEecCCcEEEccCCC-cceEEEEEeeEEEEEEecCCeeeeeeeeecCCCCeecHH
Q 005042 495 LKPSLCTEGTCVVREGDP-VVEMLLIIRGSLESVTTDGGRTGFYNRGMLKEGDFCGEE 551 (717)
Q Consensus 495 l~~~~~~~ge~Ii~eGd~-~~~myfI~~G~v~v~~~~~g~e~~~~~~~l~~Gd~fGe~ 551 (717)
.....+.||..+-.--.+ .+...+|++|.+++... |. ...+.+||++-..
T Consensus 45 ~~~v~~~~G~~~~~H~hp~~~~~~~Vl~G~~~~~~~--g~-----~~~l~~Gd~i~ip 95 (131)
T COG1917 45 VVLVTFEPGAVIPWHTHPLGEQTIYVLEGEGTVQLE--GE-----KKELKAGDVIIIP 95 (131)
T ss_pred EEEEEECCCcccccccCCCcceEEEEEecEEEEEec--CC-----ceEecCCCEEEEC
Confidence 345678899888777776 77999999999988765 33 4678999998644
No 72
>PF14377 DUF4414: Domain of unknown function (DUF4414)
Probab=33.69 E-value=75 Score=28.46 Aligned_cols=47 Identities=21% Similarity=0.359 Sum_probs=31.7
Q ss_pred CCCHHHHHHHHHHHHHHHhhh--------------cCCCHHHHHHhCChhHHHHHHHHHHHH
Q 005042 425 WLPQDLRERVRRYDHFKWLET--------------RGVDEEHLVQNLPKDLRRDIKRHLCLN 472 (717)
Q Consensus 425 ~lp~~L~~rV~~y~~y~w~~~--------------~~~de~~ll~~Lp~~Lr~~I~~~l~~~ 472 (717)
-||+++|..|..-....-... ..+ ..++|..||++||.+|.......
T Consensus 8 aLPeDiR~Evl~~~~~~~~~~~~~~~~~~~~~~~~~~I-~pefL~ALP~diR~EVl~qe~~~ 68 (108)
T PF14377_consen 8 ALPEDIREEVLAQQQRERRAQASQRQSPQSSAPQPSQI-DPEFLAALPPDIREEVLAQERRE 68 (108)
T ss_pred HCCHHHHHHHHHHHHhhccchhcccCcccccCCCcccc-CHHHHHhCCHHHHHHHHHHHHHH
Confidence 489999999855444322110 011 26899999999999998776544
No 73
>PF02037 SAP: SAP domain; InterPro: IPR003034 The SAP (after SAF-A/B, Acinus and PIAS) motif is a putative DNA binding domain found in diverse nuclear proteins involved in chromosomal organisation [], including in apoptosis []. In yeast, SAP is found in the most distal N-terminal region of E3 SUMO-protein ligase SIZ1, where it is involved in nuclear localization [].; GO: 0003676 nucleic acid binding; PDB: 2RNN_A 1JEQ_A 2KW9_A 2KVU_A 2DO1_A 1ZBU_B 1ZBH_A 2DO5_A 2RNO_A 1H1J_S ....
Probab=32.95 E-value=84 Score=21.98 Aligned_cols=26 Identities=19% Similarity=0.216 Sum_probs=20.5
Q ss_pred HHHHHHHHHHhCCCC-----HHHHHHHHHHH
Q 005042 413 KRRDSEQWMHHRWLP-----QDLRERVRRYD 438 (717)
Q Consensus 413 k~~~~~~~m~~~~lp-----~~L~~rV~~y~ 438 (717)
+..++.++++.+++| .+|.+|+.+|+
T Consensus 5 ~v~eLk~~l~~~gL~~~G~K~~Li~Rl~~~l 35 (35)
T PF02037_consen 5 TVAELKEELKERGLSTSGKKAELIERLKEHL 35 (35)
T ss_dssp HHHHHHHHHHHTTS-STSSHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHCCCCCCCCHHHHHHHHHHhC
Confidence 456788999999998 67888988874
No 74
>COG0662 {ManC} Mannose-6-phosphate isomerase [Carbohydrate transport and metabolism]
Probab=32.76 E-value=97 Score=28.43 Aligned_cols=47 Identities=17% Similarity=0.225 Sum_probs=33.5
Q ss_pred ceeEEecCCcEE-EccCCCcceEEEEEeeEEEEEEecCCeeeeeeeeecCCCCee
Q 005042 495 LKPSLCTEGTCV-VREGDPVVEMLLIIRGSLESVTTDGGRTGFYNRGMLKEGDFC 548 (717)
Q Consensus 495 l~~~~~~~ge~I-i~eGd~~~~myfI~~G~v~v~~~~~g~e~~~~~~~l~~Gd~f 548 (717)
.....+++|+-+ .+--...++.|+|++|...+... ++ ...+++||.+
T Consensus 38 ~~~~~v~pg~~~~~~~H~~~dE~~~Vl~G~g~v~~~--~~-----~~~v~~gd~~ 85 (127)
T COG0662 38 IARILVKPGEEISLHHHHHRDEHWYVLEGTGKVTIG--GE-----EVEVKAGDSV 85 (127)
T ss_pred EEEEEECCCcccCcccccCcceEEEEEeeEEEEEEC--CE-----EEEecCCCEE
Confidence 455677787775 44334479999999999988764 33 3567888876
No 75
>KOG4440 consensus NMDA selective glutamate-gated ion channel receptor subunit GRIN1 [Inorganic ion transport and metabolism; Amino acid transport and metabolism; Signal transduction mechanisms]
Probab=30.45 E-value=1.4e+02 Score=34.72 Aligned_cols=52 Identities=17% Similarity=0.339 Sum_probs=43.2
Q ss_pred HHHHHHHHHhhccccCCCCccCchhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005042 349 FYCLWFGLQNLSTLGQGLKTSTYIQEIIFSILIGIAGLVLLALLIGNMQTYL 400 (717)
Q Consensus 349 ~~slywal~tlttvGygd~~~~~~~E~~f~i~i~i~G~~lfa~lIg~~~~~l 400 (717)
-.++||+-..+..-|-|.-+|.+..-+++.++++=+.+++.|-..+|+++.+
T Consensus 615 ssAmWF~WGVLLNSGigEgtPRSfSARvLGmVWaGFaMIiVASYTANLAAFL 666 (993)
T KOG4440|consen 615 SSAMWFSWGVLLNSGIGEGTPRSFSARVLGMVWAGFAMIIVASYTANLAAFL 666 (993)
T ss_pred hhhHHHHhHhhhccccCCCCCcchhHHHHHHHHhhhheeeehhhhhhhhhhe
Confidence 3477877777777788888999999999999998888888888888888876
No 76
>PF08016 PKD_channel: Polycystin cation channel; InterPro: IPR013122 Polycystic kidney diseases (PKD) are disorders characterised by large numbers of cysts distributed throughout grossly-enlarged kidneys. Cyst development is associated with impairment of kidney function, and ultimately kidney failure and death []. Most cases of autosomal dominant PKD result from mutations in the PKD1 gene that cause premature protein termination. A second gene for autosomal dominant polycystic kidney disease has been identified by positional cloning []. The predicted 968-amino acid sequence of the PKD2 gene product (polycystin-2) contains 6 transmembrane domains, with intracellular N- and C-termini. Polycystin-2 shares some similarity with the family of voltage-activated calcium (and sodium) channels, and contains a potential calcium-binding domain. Polycystin-2 is strongly expressed in ovary, foetal and adult kidney, testis, and small intestine. Polycystin-1 requires the presence of this protein for stable expression and is believed to interact with it via its C terminus. All mutations between exons 1 and 11 result in a truncated polycystin-2 that lacks a calcium-binding EF-hand domain and the cytoplasmic domains required for the interaction of polycystin-2 with polycystin-1 []. PKD2, although clinically milder than PKD1, has a deleterious impact on life expectancy. This entry contains proteins belonging to the polycystin family including Mucolipin and Polycystin-1 and -2 (PKD1 and PKD2). The domain contains the cation channel region of PKD1 and PKD2 proteins. PKD1 and PKD2 may function through a common signalling pathway that is necessary for normal tubulogenesis. The PKD2 gene product has six transmembrane spans with intracellular amino- and carboxyl-termini []. Mucolipin is a cationic channel which probably plays a role in the endocytic pathway and in the control of membrane trafficking of proteins and lipids. It could play a major role in the calcium ion transport regulating lysosomal exocytosis [, , ].
Probab=28.09 E-value=6.6e+02 Score=28.07 Aligned_cols=20 Identities=25% Similarity=0.461 Sum_probs=14.7
Q ss_pred HHHHHHHHhh-hhHHHhhhcc
Q 005042 162 ALISRRYFRR-LFLVDFLSVL 181 (717)
Q Consensus 162 ~~Ia~rYl~~-~F~iDlls~l 181 (717)
++..++|+++ |-++|++.++
T Consensus 233 ~~~g~~y~~~~WN~~e~~ii~ 253 (425)
T PF08016_consen 233 RREGRAYFKSFWNWLELLIIL 253 (425)
T ss_pred HHhhhHHhhhcCcHHHHHHHH
Confidence 3445789988 8888887654
No 77
>KOG1053 consensus Glutamate-gated NMDA-type ion channel receptor subunit GRIN2A and related subunits [Inorganic ion transport and metabolism; Amino acid transport and metabolism; Signal transduction mechanisms]
Probab=27.72 E-value=8.7e+02 Score=30.02 Aligned_cols=47 Identities=13% Similarity=0.264 Sum_probs=36.4
Q ss_pred HHHHHHhhccccCCCCccCchhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005042 352 LWFGLQNLSTLGQGLKTSTYIQEIIFSILIGIAGLVLLALLIGNMQTYL 400 (717)
Q Consensus 352 lywal~tlttvGygd~~~~~~~E~~f~i~i~i~G~~lfa~lIg~~~~~l 400 (717)
+-||+.-=-||- -..|....-++.+.+++++++++.|.-.+|+++.+
T Consensus 616 llwaLvFnnsVp--v~nPKgtTskiMv~VWAfFavifLAsYTANLAAfM 662 (1258)
T KOG1053|consen 616 LLWALVFNNSVP--VENPKGTTSKIMVLVWAFFAVIFLASYTANLAAFM 662 (1258)
T ss_pred HHHHHHhCCCcC--CCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 457775444432 34567788899999999999999999999998866
No 78
>PF01484 Col_cuticle_N: Nematode cuticle collagen N-terminal domain; InterPro: IPR002486 The function of this domain is unknown. It is found in the N-terminal region of nematode cuticle collagens (see IPR008160 from INTERPRO). Cuticle is a tough elastic structure secreted by hypodermal cells and is primarily composed of collagen proteins [, ].; GO: 0042302 structural constituent of cuticle
Probab=27.66 E-value=2.7e+02 Score=20.93 Aligned_cols=42 Identities=17% Similarity=0.326 Sum_probs=26.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Q 005042 376 IFSILIGIAGLVLLALLIGNMQTYLTSLTVRLEEMRIKRRDS 417 (717)
Q Consensus 376 ~f~i~i~i~G~~lfa~lIg~~~~~l~~~~~~~~e~~~k~~~~ 417 (717)
.++.+..+..++....+...++.+-.......+++|..-+++
T Consensus 8 ~~s~~ai~~~l~~~p~i~~~i~~~~~~~~~em~~fk~~s~d~ 49 (53)
T PF01484_consen 8 VVSTVAILSCLITVPSIYNDIQNFQSELDDEMEEFKEISDDA 49 (53)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444455555556666777777777777777777766655
No 79
>PF06249 EutQ: Ethanolamine utilisation protein EutQ; InterPro: IPR010424 The eut operon of Salmonella typhimurium encodes proteins involved in the cobalamin-dependent degradation of ethanolamine. The role of EutQ in this process is unclear [].; PDB: 2PYT_B 3LWC_A.
Probab=26.60 E-value=1.8e+02 Score=27.82 Aligned_cols=51 Identities=29% Similarity=0.351 Sum_probs=33.3
Q ss_pred CcceEEEEEeeEEEEEEecCCeeeeeeeeecCCCCeecHHhHhhhcCCCCCCCCCCcccEEEEcceeEEEEE
Q 005042 512 PVVEMLLIIRGSLESVTTDGGRTGFYNRGMLKEGDFCGEELLTWALDPKSVTNLPLSTRTVRALDEVEAFSL 583 (717)
Q Consensus 512 ~~~~myfI~~G~v~v~~~~~g~e~~~~~~~l~~Gd~fGe~~l~~~l~~~~~~n~p~s~~tv~A~t~~el~~L 583 (717)
..+++.+|++|.+.+.. +|+ ....++||.+= + ++. ++.+..+-..+.++..
T Consensus 94 ~YDEi~~VlEG~L~i~~--~G~-----~~~A~~GDvi~-------i-PkG------s~I~fst~~~a~~~Yv 144 (152)
T PF06249_consen 94 TYDEIKYVLEGTLEISI--DGQ-----TVTAKPGDVIF-------I-PKG------STITFSTPDYARFFYV 144 (152)
T ss_dssp SSEEEEEEEEEEEEEEE--TTE-----EEEEETT-EEE-------E--TT-------EEEEEEEEEEEEEEE
T ss_pred ecceEEEEEEeEEEEEE--CCE-----EEEEcCCcEEE-------E-CCC------CEEEEecCCCEEEEEE
Confidence 35889999999998763 355 46788999872 2 332 5666666667776654
No 80
>PRK04190 glucose-6-phosphate isomerase; Provisional
Probab=26.25 E-value=2.3e+02 Score=28.22 Aligned_cols=52 Identities=10% Similarity=-0.018 Sum_probs=32.9
Q ss_pred eeEEecCCcEE---------EccCCCcceEEEEEeeEEEEEEecCCeeeeeeeeecCCCCeec
Q 005042 496 KPSLCTEGTCV---------VREGDPVVEMLLIIRGSLESVTTDGGRTGFYNRGMLKEGDFCG 549 (717)
Q Consensus 496 ~~~~~~~ge~I---------i~eGd~~~~myfI~~G~v~v~~~~~g~e~~~~~~~l~~Gd~fG 549 (717)
-...+.||... +++.....++|+|++|...+...+...+.. ...+.+||.+=
T Consensus 71 g~t~l~PG~~g~e~~mt~gH~H~~~~~~EiyyvlsG~g~~~l~~~~G~~~--~~~v~pGd~v~ 131 (191)
T PRK04190 71 GTTRLYPGKVGDEYFMTKGHFHAKADRAEIYYGLKGKGLMLLQDPEGEAR--WIEMEPGTVVY 131 (191)
T ss_pred EEEEECCCcEecccccCCCeEcCCCCCCEEEEEEeCEEEEEEecCCCcEE--EEEECCCCEEE
Confidence 34466777742 334334569999999999877643321111 46789999863
No 81
>PHA03029 hypothetical protein; Provisional
Probab=24.65 E-value=3.6e+02 Score=22.37 Aligned_cols=36 Identities=28% Similarity=0.356 Sum_probs=27.1
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHH
Q 005042 371 YIQEIIFSILIGIAGLVLLALLIGNMQTYLTSLTVR 406 (717)
Q Consensus 371 ~~~E~~f~i~i~i~G~~lfa~lIg~~~~~l~~~~~~ 406 (717)
+..|..|-++..++=.++--.+||-+-.++-+.++-
T Consensus 2 ~d~ei~~~ii~~iiyiilila~igiiwg~llsi~k~ 37 (92)
T PHA03029 2 DDAEIVFLIIAIIIYIILILAIIGIIWGFLLSINKI 37 (92)
T ss_pred CchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 457888888888877777777888887777776543
No 82
>PF12973 Cupin_7: ChrR Cupin-like domain; PDB: 3O14_B 2Z2S_F 2Q1Z_B 3EBR_A.
Probab=24.52 E-value=1.1e+02 Score=26.07 Aligned_cols=64 Identities=23% Similarity=0.325 Sum_probs=42.8
Q ss_pred hceeEEecCCcEEEccCCCcceEEEEEeeEEEEEEecCCeeeeeeeeecCCCCeecHHhHhhhcCCCCCCCCCCcccEEE
Q 005042 494 RLKPSLCTEGTCVVREGDPVVEMLLIIRGSLESVTTDGGRTGFYNRGMLKEGDFCGEELLTWALDPKSVTNLPLSTRTVR 573 (717)
Q Consensus 494 ~l~~~~~~~ge~Ii~eGd~~~~myfI~~G~v~v~~~~~g~e~~~~~~~l~~Gd~fGe~~l~~~l~~~~~~n~p~s~~tv~ 573 (717)
......+.||..+-.-...+.+..||++|.+. .++ ..+.+||++=.. +. +..+..
T Consensus 25 ~~~L~r~~pG~~~p~H~H~g~ee~~VLeG~~~---d~~--------~~~~~G~~~~~p-------~g-------~~h~~~ 79 (91)
T PF12973_consen 25 RVSLLRLEPGASLPRHRHPGGEEILVLEGELS---DGD--------GRYGAGDWLRLP-------PG-------SSHTPR 79 (91)
T ss_dssp EEEEEEE-TTEEEEEEEESS-EEEEEEECEEE---ETT--------CEEETTEEEEE--------TT-------EEEEEE
T ss_pred EEEEEEECCCCCcCccCCCCcEEEEEEEEEEE---ECC--------ccCCCCeEEEeC-------CC-------CccccC
Confidence 34556788998887777777888899999985 222 234778776322 11 567788
Q ss_pred EcceeEEEE
Q 005042 574 ALDEVEAFS 582 (717)
Q Consensus 574 A~t~~el~~ 582 (717)
+.++|.++.
T Consensus 80 s~~gc~~~v 88 (91)
T PF12973_consen 80 SDEGCLILV 88 (91)
T ss_dssp ESSCEEEEE
T ss_pred cCCCEEEEE
Confidence 899998875
No 83
>PRK06771 hypothetical protein; Provisional
Probab=22.64 E-value=4.1e+02 Score=23.28 Aligned_cols=60 Identities=17% Similarity=0.162 Sum_probs=32.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHH
Q 005042 374 EIIFSILIGIAGLVLLALLIGNMQTYLTSLTVRLEEMRIKRRDSEQWMHHRWLPQDLRERVRR 436 (717)
Q Consensus 374 E~~f~i~i~i~G~~lfa~lIg~~~~~l~~~~~~~~e~~~k~~~~~~~m~~~~lp~~L~~rV~~ 436 (717)
|.+..|.+.++|+ -|+.-.+..+.+.++.+....+.+++.+.+.+-.-...+.+.+.+++
T Consensus 2 E~~ili~~~~~~~---i~i~~~l~~~~~~~~~~~k~ie~~L~~I~~~~Gi~~~~~~~~~e~~~ 61 (93)
T PRK06771 2 EFWMIIPIAIFGF---IYIVEKLTKIEKKTDARLKRMEDRLQLITKEMGIVDREPPVNKELRQ 61 (93)
T ss_pred chhHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCcccccHHHHH
Confidence 3334444434443 34455556666667777777777777776666544442233344443
No 84
>KOG1054 consensus Glutamate-gated AMPA-type ion channel receptor subunit GluR2 and related subunits [Inorganic ion transport and metabolism; Amino acid transport and metabolism; Signal transduction mechanisms]
Probab=22.29 E-value=1e+02 Score=35.58 Aligned_cols=71 Identities=20% Similarity=0.286 Sum_probs=50.5
Q ss_pred HHHHHHHHHhhccccCCCCccCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhCC
Q 005042 349 FYCLWFGLQNLSTLGQGLKTSTYIQEIIFSILIGIAGLVLLALLIGNMQTYLTSLTVRLEEMRIKRRDSEQWMHHRW 425 (717)
Q Consensus 349 ~~slywal~tlttvGygd~~~~~~~E~~f~i~i~i~G~~lfa~lIg~~~~~l~~~~~~~~e~~~k~~~~~~~m~~~~ 425 (717)
+.|+||++.....-| -|+.|.....++..-++-++-+++-+--.+|+++.|. .|.|..-++.+++.-++..
T Consensus 597 fNsLWFsLgAFMQQG-~DI~PRslSGRIvggvWWFFTlIIiSSYTANLAAFLT-----vErMvsPIESaEDLAkQte 667 (897)
T KOG1054|consen 597 FNSLWFSLGAFMQQG-CDISPRSLSGRIVGGVWWFFTLIIISSYTANLAAFLT-----VERMVSPIESAEDLAKQTE 667 (897)
T ss_pred hHHHHHHHHHHHhcC-CCCCccccccceeccchhhhhhhhhhhhhhHHHHHHh-----HHhhcCcchhHHHHhhcce
Confidence 348999999997655 4999999999998888888888777777778777763 3344444444555444433
No 85
>COG5559 Uncharacterized conserved small protein [Function unknown]
Probab=22.03 E-value=86 Score=24.79 Aligned_cols=19 Identities=37% Similarity=0.658 Sum_probs=15.8
Q ss_pred HHHHHhCChhHHHHHHHHH
Q 005042 451 EHLVQNLPKDLRRDIKRHL 469 (717)
Q Consensus 451 ~~ll~~Lp~~Lr~~I~~~l 469 (717)
-+++++||.+|++++...+
T Consensus 5 yelfqkLPDdLKrEvldY~ 23 (65)
T COG5559 5 YELFQKLPDDLKREVLDYI 23 (65)
T ss_pred HHHHHHCcHHHHHHHHHHH
Confidence 3688999999999997654
No 86
>TIGR03404 bicupin_oxalic bicupin, oxalate decarboxylase family. Members of this protein family are defined as bicupins as they have two copies of the cupin domain (pfam00190). Two different known activities for members of this family are oxalate decarboxylase (EC 4.1.1.2) and oxalate oxidase (EC 1.2.3.4), although the latter activity has more often been found in distantly related monocupin (germin) proteins.
Probab=21.31 E-value=2.2e+02 Score=31.51 Aligned_cols=51 Identities=18% Similarity=0.090 Sum_probs=33.8
Q ss_pred eeEEecCCcEEEccCCCcceEEEEEeeEEEEEEecC-CeeeeeeeeecCCCCeec
Q 005042 496 KPSLCTEGTCVVREGDPVVEMLLIIRGSLESVTTDG-GRTGFYNRGMLKEGDFCG 549 (717)
Q Consensus 496 ~~~~~~~ge~Ii~eGd~~~~myfI~~G~v~v~~~~~-g~e~~~~~~~l~~Gd~fG 549 (717)
....+.+|...-.--....++.++++|++++...+. |+.. ...+++||.+=
T Consensus 70 ~~~~l~pG~~~~~HwH~~~E~~yVl~G~~~v~~~d~~g~~~---~~~L~~GD~~~ 121 (367)
T TIGR03404 70 VNMRLEPGAIRELHWHKEAEWAYVLYGSCRITAVDENGRNY---IDDVGAGDLWY 121 (367)
T ss_pred eEEEEcCCCCCCcccCCCceEEEEEeeEEEEEEEcCCCcEE---EeEECCCCEEE
Confidence 344667776543222345689999999999887543 4432 34799999874
No 87
>PRK11171 hypothetical protein; Provisional
Probab=21.29 E-value=1.9e+02 Score=30.26 Aligned_cols=49 Identities=14% Similarity=0.106 Sum_probs=37.5
Q ss_pred hceeEEecCCcEEEc-cCCCcceEEEEEeeEEEEEEecCCeeeeeeeeecCCCCeec
Q 005042 494 RLKPSLCTEGTCVVR-EGDPVVEMLLIIRGSLESVTTDGGRTGFYNRGMLKEGDFCG 549 (717)
Q Consensus 494 ~l~~~~~~~ge~Ii~-eGd~~~~myfI~~G~v~v~~~~~g~e~~~~~~~l~~Gd~fG 549 (717)
.+....++||..+-. +.....+.++|++|++.+.. +++ ...+.+||++-
T Consensus 185 ~~~~~~l~PG~~~~~~~~~~~ee~i~Vl~G~~~~~~--~~~-----~~~l~~GD~i~ 234 (266)
T PRK11171 185 HVNIVTFEPGASIPFVETHVMEHGLYVLEGKGVYRL--NND-----WVEVEAGDFIW 234 (266)
T ss_pred EEEEEEECCCCEEccCcCCCceEEEEEEeCEEEEEE--CCE-----EEEeCCCCEEE
Confidence 455678999998876 36677799999999998754 344 46789999874
No 88
>COG3837 Uncharacterized conserved protein, contains double-stranded beta-helix domain [Function unknown]
Probab=20.91 E-value=1.2e+02 Score=29.16 Aligned_cols=47 Identities=23% Similarity=0.291 Sum_probs=32.0
Q ss_pred EEecCCcE--EEccCCCcceEEEEEeeEEEEEEecCCeeeeeeeeecCCCCeecHH
Q 005042 498 SLCTEGTC--VVREGDPVVEMLLIIRGSLESVTTDGGRTGFYNRGMLKEGDFCGEE 551 (717)
Q Consensus 498 ~~~~~ge~--Ii~eGd~~~~myfI~~G~v~v~~~~~g~e~~~~~~~l~~Gd~fGe~ 551 (717)
..++||.. ..+--...+++..|++|...+.. +++ ...++|||+.|--
T Consensus 47 ~~v~PG~~Ss~~H~Hs~edEfv~ILeGE~~l~~-d~~------e~~lrpGD~~gFp 95 (161)
T COG3837 47 EIVEPGGESSLRHWHSAEDEFVYILEGEGTLRE-DGG------ETRLRPGDSAGFP 95 (161)
T ss_pred EEeCCCCccccccccccCceEEEEEcCceEEEE-CCe------eEEecCCceeecc
Confidence 34555432 34444567899999999997664 444 4678999998843
Done!