Query 005042
Match_columns 717
No_of_seqs 532 out of 3203
Neff 7.6
Searched_HMMs 29240
Date Mon Mar 25 13:37:18 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/005042.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/005042hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3beh_A MLL3241 protein; transm 100.0 3.9E-34 1.3E-38 311.0 16.5 343 70-608 3-347 (355)
2 3ukn_A Novel protein similar t 100.0 2.9E-32 1E-36 274.0 16.1 205 397-615 1-205 (212)
3 2ptm_A Hyperpolarization-activ 100.0 6.2E-31 2.1E-35 261.4 23.7 192 402-608 2-193 (198)
4 3bpz_A Potassium/sodium hyperp 100.0 1.1E-30 3.7E-35 260.6 21.9 190 401-606 2-191 (202)
5 1orq_C Potassium channel; volt 99.9 3.3E-22 1.1E-26 202.8 17.6 211 79-402 9-220 (223)
6 4f8a_A Potassium voltage-gated 99.8 3.2E-19 1.1E-23 169.6 15.9 142 450-606 5-148 (160)
7 2r9r_B Paddle chimera voltage 99.8 7.5E-19 2.6E-23 198.8 16.3 293 71-470 174-489 (514)
8 3gyd_A CNMP-BD protein, cyclic 99.7 3.3E-17 1.1E-21 161.0 18.7 153 449-612 12-169 (187)
9 3ocp_A PRKG1 protein; serine/t 99.7 1.8E-17 6.3E-22 154.1 13.1 131 456-601 7-137 (139)
10 3dn7_A Cyclic nucleotide bindi 99.7 4E-17 1.4E-21 160.6 15.9 150 470-647 5-156 (194)
11 3mdp_A Cyclic nucleotide-bindi 99.7 5.5E-17 1.9E-21 150.7 13.3 133 471-612 5-139 (142)
12 3idb_B CAMP-dependent protein 99.7 4E-17 1.4E-21 155.8 11.2 128 462-600 28-155 (161)
13 4ev0_A Transcription regulator 99.7 3.6E-16 1.2E-20 156.1 17.9 127 474-611 1-128 (216)
14 2pqq_A Putative transcriptiona 99.7 2E-16 7E-21 147.9 15.0 123 471-604 4-127 (149)
15 1wgp_A Probable cyclic nucleot 99.7 1.9E-17 6.6E-22 153.2 7.5 129 472-600 6-134 (137)
16 3d0s_A Transcriptional regulat 99.7 6E-16 2.1E-20 156.0 14.5 130 471-611 5-135 (227)
17 3dv8_A Transcriptional regulat 99.7 1.3E-15 4.4E-20 152.5 16.7 128 472-610 3-133 (220)
18 2z69_A DNR protein; beta barre 99.7 1.4E-15 4.8E-20 143.1 15.9 128 471-608 11-139 (154)
19 3fx3_A Cyclic nucleotide-bindi 99.6 7.6E-16 2.6E-20 156.3 13.5 129 470-609 9-138 (237)
20 1vp6_A CNBD, cyclic-nucleotide 99.6 1.5E-15 5.2E-20 140.4 14.3 124 470-610 9-132 (138)
21 3e97_A Transcriptional regulat 99.6 2.4E-15 8.2E-20 152.0 16.9 130 471-611 5-135 (231)
22 3pna_A CAMP-dependent protein 99.6 2.2E-15 7.5E-20 142.7 13.8 118 468-600 34-151 (154)
23 3iwz_A CAP-like, catabolite ac 99.6 1.1E-14 3.6E-19 146.8 18.7 128 471-609 10-144 (230)
24 2gau_A Transcriptional regulat 99.6 3.4E-15 1.2E-19 151.0 14.8 126 475-611 13-139 (232)
25 3shr_A CGMP-dependent protein 99.6 4.3E-15 1.5E-19 156.4 15.6 142 452-608 19-160 (299)
26 3dkw_A DNR protein; CRP-FNR, H 99.6 6.8E-15 2.3E-19 148.0 14.9 130 471-610 8-138 (227)
27 1zyb_A Transcription regulator 99.6 3.9E-15 1.3E-19 150.9 13.0 129 470-608 16-147 (232)
28 3ryp_A Catabolite gene activat 99.6 3.5E-14 1.2E-18 140.9 17.2 122 478-610 2-125 (210)
29 4ava_A Lysine acetyltransferas 99.6 1.6E-14 5.4E-19 154.6 15.7 128 471-611 12-140 (333)
30 2fmy_A COOA, carbon monoxide o 99.6 6.4E-15 2.2E-19 147.8 10.9 122 472-611 4-125 (220)
31 2d93_A RAP guanine nucleotide 99.6 1.7E-15 5.8E-20 139.9 5.5 124 458-596 2-127 (134)
32 2oz6_A Virulence factor regula 99.6 8.1E-14 2.8E-18 138.0 17.8 117 483-610 1-122 (207)
33 3shr_A CGMP-dependent protein 99.5 1.2E-14 4E-19 153.0 10.6 130 468-608 153-284 (299)
34 1ft9_A Carbon monoxide oxidati 99.5 1.8E-14 6.1E-19 144.9 10.9 120 473-610 1-120 (222)
35 3kcc_A Catabolite gene activat 99.5 1.2E-13 4.1E-18 142.7 17.2 119 481-610 55-175 (260)
36 2qcs_B CAMP-dependent protein 99.5 9.4E-14 3.2E-18 145.3 16.2 128 469-607 154-283 (291)
37 3of1_A CAMP-dependent protein 99.5 5.3E-14 1.8E-18 142.9 13.0 124 470-608 5-128 (246)
38 3of1_A CAMP-dependent protein 99.5 6E-14 2E-18 142.5 13.2 117 469-599 122-238 (246)
39 2qcs_B CAMP-dependent protein 99.5 1.3E-13 4.6E-18 144.1 15.9 129 466-609 33-161 (291)
40 1o5l_A Transcriptional regulat 99.5 8.9E-14 3E-18 139.0 13.1 121 477-608 4-126 (213)
41 3tnp_B CAMP-dependent protein 99.5 9.6E-14 3.3E-18 153.6 14.4 130 462-602 135-264 (416)
42 2a9h_A Voltage-gated potassium 99.5 7E-14 2.4E-18 132.7 10.9 64 346-409 83-146 (155)
43 3vou_A ION transport 2 domain 99.5 3.2E-13 1.1E-17 127.6 15.0 86 348-433 53-148 (148)
44 4din_B CAMP-dependent protein 99.5 7.7E-14 2.6E-18 152.5 11.1 132 468-610 244-377 (381)
45 4din_B CAMP-dependent protein 99.5 2.6E-13 8.8E-18 148.4 13.3 129 465-608 123-251 (381)
46 4h33_A LMO2059 protein; bilaye 99.5 1.2E-13 4E-18 128.8 8.6 92 348-439 44-135 (137)
47 3tnp_B CAMP-dependent protein 99.4 1.4E-13 4.9E-18 152.2 10.5 124 469-603 264-394 (416)
48 3e6c_C CPRK, cyclic nucleotide 99.4 4.5E-13 1.5E-17 137.2 11.8 124 474-611 11-135 (250)
49 3la7_A Global nitrogen regulat 99.4 1.9E-12 6.5E-17 132.1 14.9 117 485-610 30-150 (243)
50 2ih3_C Voltage-gated potassium 99.4 1.7E-12 5.9E-17 118.4 12.3 60 346-405 60-119 (122)
51 1o7f_A CAMP-dependent RAP1 gua 99.4 1.7E-12 6E-17 145.3 14.9 150 442-603 11-164 (469)
52 2bgc_A PRFA; bacterial infecti 99.4 6.6E-12 2.3E-16 127.5 17.8 121 481-611 2-126 (238)
53 1o7f_A CAMP-dependent RAP1 gua 99.4 1.1E-12 3.7E-17 147.0 12.7 121 468-602 333-455 (469)
54 4f7z_A RAP guanine nucleotide 99.3 1.5E-11 5.2E-16 150.5 15.4 135 452-599 23-160 (999)
55 3eff_K Voltage-gated potassium 99.3 1.7E-11 5.9E-16 114.5 11.8 90 347-437 40-130 (139)
56 3cf6_E RAP guanine nucleotide 99.3 1.1E-11 3.7E-16 145.1 12.1 133 451-598 12-146 (694)
57 3rvy_A ION transport protein; 99.2 4.5E-11 1.5E-15 125.3 14.5 62 345-406 178-245 (285)
58 3b02_A Transcriptional regulat 99.2 7.6E-11 2.6E-15 115.8 12.4 94 498-609 2-96 (195)
59 4f7z_A RAP guanine nucleotide 99.2 1.1E-10 3.8E-15 142.9 14.1 115 468-596 333-449 (999)
60 2zcw_A TTHA1359, transcription 99.1 2.3E-10 7.9E-15 112.9 11.0 99 491-608 1-102 (202)
61 2q67_A Potassium channel prote 99.1 8.2E-10 2.8E-14 99.3 11.7 61 348-408 50-110 (114)
62 3ouf_A Potassium channel prote 99.0 1.8E-09 6.1E-14 94.2 11.4 56 348-403 33-88 (97)
63 2k1e_A Water soluble analogue 99.0 1.3E-10 4.4E-15 102.6 3.1 59 347-405 40-98 (103)
64 3ldc_A Calcium-gated potassium 98.9 3.1E-09 1.1E-13 89.6 8.0 54 347-400 28-81 (82)
65 3pjs_K KCSA, voltage-gated pot 98.9 1.2E-10 3.9E-15 112.2 -1.8 65 345-409 65-129 (166)
66 3um7_A Potassium channel subfa 98.7 4.8E-08 1.6E-12 102.3 12.0 57 347-403 115-171 (309)
67 1xl4_A Inward rectifier potass 98.7 6E-08 2.1E-12 101.8 10.7 55 347-401 82-136 (301)
68 2qks_A KIR3.1-prokaryotic KIR 98.6 1.4E-07 4.8E-12 99.7 10.7 58 347-404 78-135 (321)
69 1p7b_A Integral membrane chann 98.6 1E-07 3.6E-12 101.1 8.6 58 347-404 96-153 (333)
70 3sya_A G protein-activated inw 98.5 5.9E-07 2E-11 95.1 12.3 59 348-406 92-152 (340)
71 4gx0_A TRKA domain protein; me 98.4 1.1E-06 3.8E-11 100.7 12.4 53 348-400 52-105 (565)
72 3ukm_A Potassium channel subfa 98.3 1.2E-06 4.2E-11 90.3 8.3 55 347-401 93-147 (280)
73 4dxw_A Navrh, ION transport pr 98.3 1.9E-05 6.4E-10 79.5 17.1 75 79-183 13-88 (229)
74 3spc_A Inward-rectifier K+ cha 98.3 3.5E-06 1.2E-10 89.3 11.2 59 346-404 93-153 (343)
75 3um7_A Potassium channel subfa 98.2 3.8E-07 1.3E-11 95.5 3.7 60 348-407 225-290 (309)
76 3ukm_A Potassium channel subfa 98.1 1.7E-06 5.8E-11 89.2 5.4 57 348-404 202-265 (280)
77 1lnq_A MTHK channels, potassiu 98.0 5.2E-07 1.8E-11 96.5 -2.3 56 348-403 46-101 (336)
78 2kyh_A KVAP, voltage-gated pot 97.8 4.1E-05 1.4E-09 71.6 8.5 78 79-186 22-99 (147)
79 1ors_C Potassium channel; volt 97.4 0.00029 9.8E-09 64.6 7.2 80 78-187 6-85 (132)
80 3rns_A Cupin 2 conserved barre 73.9 10 0.00036 37.1 8.8 68 495-583 39-106 (227)
81 2ozj_A Cupin 2, conserved barr 72.3 12 0.00041 31.8 7.9 65 498-583 43-107 (114)
82 3fjs_A Uncharacterized protein 70.2 12 0.00041 32.2 7.4 66 496-582 39-104 (114)
83 2kxw_B Sodium channel protein 66.0 5.3 0.00018 25.6 2.9 20 614-633 4-23 (27)
84 2l53_B CAM, voltage-gated sodi 65.3 5.6 0.00019 26.3 3.0 22 613-634 3-24 (31)
85 1yhf_A Hypothetical protein SP 63.9 26 0.00088 29.6 8.3 67 496-583 43-109 (115)
86 3kg2_A Glutamate receptor 2; I 61.4 8.1 0.00028 45.2 5.9 55 347-402 563-617 (823)
87 2pfw_A Cupin 2, conserved barr 60.0 36 0.0012 28.7 8.5 67 496-583 37-103 (116)
88 3lwc_A Uncharacterized protein 59.4 21 0.00073 31.1 6.9 45 497-549 44-88 (119)
89 4e2g_A Cupin 2 conserved barre 54.6 36 0.0012 29.2 7.7 47 495-548 43-89 (126)
90 1yfu_A 3-hydroxyanthranilate-3 50.7 34 0.0012 32.1 6.9 59 512-587 54-113 (174)
91 3d0j_A Uncharacterized protein 46.7 33 0.0011 31.0 5.9 63 509-586 46-110 (140)
92 1o5u_A Novel thermotoga mariti 46.2 53 0.0018 27.6 7.0 47 495-549 33-79 (101)
93 1zvf_A 3-hydroxyanthranilate 3 46.1 1.2E+02 0.004 28.5 9.7 86 486-587 12-115 (176)
94 2gu9_A Tetracenomycin polyketi 43.9 32 0.0011 28.5 5.4 47 496-549 24-73 (113)
95 4axo_A EUTQ, ethanolamine util 43.4 52 0.0018 30.1 6.9 52 512-584 83-134 (151)
96 1v70_A Probable antibiotics sy 42.3 39 0.0013 27.4 5.6 45 497-548 32-77 (105)
97 3rns_A Cupin 2 conserved barre 42.0 49 0.0017 32.1 7.1 68 495-583 155-223 (227)
98 3d82_A Cupin 2, conserved barr 40.6 49 0.0017 26.9 6.0 51 513-584 50-100 (102)
99 3h8u_A Uncharacterized conserv 39.9 37 0.0013 29.1 5.3 48 495-548 41-89 (125)
100 2bnm_A Epoxidase; oxidoreducta 39.1 63 0.0021 30.2 7.2 49 498-549 122-173 (198)
101 3bcw_A Uncharacterized protein 37.5 25 0.00084 31.0 3.7 44 499-549 55-98 (123)
102 1dgw_A Canavalin; duplicated s 37.3 37 0.0013 31.7 5.1 52 495-549 43-94 (178)
103 3es4_A Uncharacterized protein 34.6 41 0.0014 29.4 4.5 44 499-549 48-91 (116)
104 2i45_A Hypothetical protein; n 34.1 45 0.0015 27.7 4.7 68 500-587 35-102 (107)
105 2qnk_A 3-hydroxyanthranilate 3 33.7 88 0.003 31.6 7.3 60 511-587 49-108 (286)
106 3ibm_A Cupin 2, conserved barr 32.4 49 0.0017 30.5 5.1 46 497-549 60-105 (167)
107 2q30_A Uncharacterized protein 31.6 1.4E+02 0.0047 24.4 7.4 67 497-583 37-105 (110)
108 2fqp_A Hypothetical protein BP 31.3 27 0.00093 28.7 2.8 48 497-549 22-70 (97)
109 4b29_A Dimethylsulfoniopropion 30.6 69 0.0024 31.2 5.8 45 499-549 138-182 (217)
110 2o1q_A Putative acetyl/propion 29.7 64 0.0022 29.0 5.2 50 495-549 46-95 (145)
111 2q1z_B Anti-sigma factor CHRR, 28.8 80 0.0027 30.0 6.0 65 494-583 126-192 (195)
112 1fi2_A Oxalate oxidase, germin 28.7 87 0.003 29.6 6.3 53 495-549 74-130 (201)
113 2b8m_A Hypothetical protein MJ 28.6 52 0.0018 27.8 4.2 44 498-548 32-76 (117)
114 3es1_A Cupin 2, conserved barr 28.3 52 0.0018 30.8 4.4 48 495-548 81-128 (172)
115 2opk_A Hypothetical protein; p 28.2 57 0.0019 27.7 4.4 34 511-549 51-84 (112)
116 3jzv_A Uncharacterized protein 27.6 47 0.0016 30.7 4.0 45 498-549 58-102 (166)
117 3kgz_A Cupin 2 conserved barre 27.5 48 0.0016 30.3 4.0 44 498-548 49-92 (156)
118 4i4a_A Similar to unknown prot 27.3 68 0.0023 27.4 4.8 79 497-596 38-120 (128)
119 2f4p_A Hypothetical protein TM 27.1 85 0.0029 28.0 5.6 47 497-549 52-98 (147)
120 4e2q_A Ureidoglycine aminohydr 26.5 1.1E+02 0.0036 30.8 6.6 69 497-585 74-142 (266)
121 1o4t_A Putative oxalate decarb 26.3 63 0.0021 28.3 4.4 45 497-548 61-106 (133)
122 1vj2_A Novel manganese-contain 26.3 60 0.002 28.0 4.2 44 498-548 53-96 (126)
123 1sfn_A Conserved hypothetical 26.1 1.6E+02 0.0055 28.7 7.9 65 497-584 54-118 (246)
124 1y9q_A Transcriptional regulat 25.6 93 0.0032 28.9 5.8 44 498-548 109-154 (192)
125 1lr5_A Auxin binding protein 1 24.6 64 0.0022 29.2 4.3 50 497-549 45-99 (163)
126 2pyt_A Ethanolamine utilizatio 23.7 71 0.0024 28.3 4.2 44 497-549 61-104 (133)
127 3i7d_A Sugar phosphate isomera 23.7 59 0.002 29.7 3.9 46 497-549 47-94 (163)
128 1sfn_A Conserved hypothetical 22.7 81 0.0028 31.0 4.9 49 494-549 166-215 (246)
129 3h7j_A Bacilysin biosynthesis 22.4 93 0.0032 30.4 5.3 47 495-548 36-82 (243)
130 2vqa_A SLL1358 protein, MNCA; 22.3 1.1E+02 0.0038 31.6 6.1 51 496-549 55-107 (361)
131 2d40_A Z3393, putative gentisa 21.9 1.6E+02 0.0054 30.7 7.2 72 497-589 272-343 (354)
132 3nw4_A Gentisate 1,2-dioxygena 21.7 1.1E+02 0.0038 32.2 5.8 75 497-592 283-357 (368)
133 3h7j_A Bacilysin biosynthesis 21.5 1.4E+02 0.0048 29.1 6.4 46 497-549 149-195 (243)
134 1uij_A Beta subunit of beta co 21.2 86 0.003 33.6 5.0 53 494-549 50-102 (416)
135 2vpv_A Protein MIF2, MIF2P; nu 21.0 58 0.002 30.3 3.2 45 498-549 93-139 (166)
136 3ht1_A REMF protein; cupin fol 21.0 77 0.0026 27.6 4.0 45 499-548 45-89 (145)
137 1j58_A YVRK protein; cupin, de 21.0 1.1E+02 0.0039 31.9 6.0 50 496-548 82-132 (385)
138 3bu7_A Gentisate 1,2-dioxygena 20.9 59 0.002 34.7 3.6 48 496-549 126-173 (394)
139 2vqa_A SLL1358 protein, MNCA; 20.2 1.4E+02 0.0049 30.8 6.5 52 495-549 236-289 (361)
140 2oa2_A BH2720 protein; 1017534 20.1 1.2E+02 0.0042 26.8 5.2 51 497-548 47-98 (148)
No 1
>3beh_A MLL3241 protein; transmembrane protein, membrane protein; HET: LDA; 3.10A {Mesorhizobium loti} PDB: 2zd9_A*
Probab=100.00 E-value=3.9e-34 Score=310.97 Aligned_cols=343 Identities=17% Similarity=0.223 Sum_probs=130.9
Q ss_pred ecCCChHHHHHHHHHHHHHHHHHhhhccccccccccCCccccccccchhHHHHHHHHHHHHHHHHhHhhhceeeEEcCCC
Q 005042 70 IDPQDRSLLFWNRLFVFTCFISVSIDPLFFYLPFFDKENYCLGMDVQLAAAITTFRSILDCIYSCRIPFQFRTAYIAPSS 149 (717)
Q Consensus 70 i~P~s~~~~~W~~~~li~~i~~~~v~Pl~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~Di~f~~Di~l~F~tay~~~~s 149 (717)
+.|+|+.. +.++++++++++++.-+.-+ |-. .......+..++.++-++|++|+++++..+ +.
T Consensus 3 ~~p~s~~f---~~~~~~~i~ls~~~~~~~t~-~~~---------~~~~~~~~~~~~~~~~~~f~~e~~~r~~~~---~~- 65 (355)
T 3beh_A 3 VLPFLRIY---APLNAVLAAPGLLAVAALTI-PDM---------SGRSRLALAALLAVIWGAYLLQLAATLLKR---RA- 65 (355)
T ss_dssp ----CCSS---SSHHHHHHHHHHHHHHHHTS-SSC---------CHHHHHHHHHHHHHHHHHHHHHHHHHHHCC---CS-
T ss_pred CCchhHHH---HHHHHHHHHHHHHHHHHHcc-cch---------hhhHHHHHHHHHhHHHHHHHHHHHHhcccc---cc-
Confidence 45777743 66666666667666655522 211 112222344556666667899999998432 11
Q ss_pred cccCCCeEeeCHHHHHHHHHh-hhhHHHhhhc-cchhhhhhheeecCccchhhhhhhhhhHHHHHhHhhhhhhhhhhhhh
Q 005042 150 RVFGRGELVVDPALISRRYFR-RLFLVDFLSV-LPIPQLLVSVYLSDTRAKVFSTKEALPLLIILQYVPRILRIFPLISE 227 (717)
Q Consensus 150 ~~~~~G~lV~d~~~Ia~rYl~-~~F~iDlls~-lPl~~i~~~~~~~~~~~~~~~~~~~Lrli~l~q~l~Rl~ri~~l~~~ 227 (717)
. .+|.+ .|.++|++++ +|+..++. + +. ...+++|++| +.|+.|..+..+.
T Consensus 66 ------~---------~~~~~~~~~i~Dl~~i~~p~~~~~~----~--~~---~~~r~lr~~R----~lrl~r~~~~~~~ 117 (355)
T 3beh_A 66 ------G---------VVRDRTPKIAIDVLAVLVPLAAFLL----D--GS---PDWSLYCAVW----LLKPLRDSTFFPV 117 (355)
T ss_dssp ------C---------SSCCCHHHHHHHHHHHHHHHHHHHS----C--CS---GGGGGGGGGG----GSHHHHTCSSHHH
T ss_pred ------c---------ceeccCcchHHHHHHHHHHHHHHHh----c--cc---hhHHHHHHHH----HHHHHHHHHHHHH
Confidence 0 12333 4899999999 69865432 1 11 1122232211 2233333322222
Q ss_pred hhhhhhHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhhhhHHhhcccCCCCcccccccCCCCCCccccccchhh
Q 005042 228 LKKTVGVFVESALGGAAYYLLCYIVCSHIVGAFWYLLAVERNFTCWQQACNQTGRCSHSFLYCHNTNFGGFDDWKQTREH 307 (717)
Q Consensus 228 l~~~~~~~~~~~~~~~~~~lll~~l~~H~~aC~wy~~~~~~~~~~w~~~c~~~~~c~~~~l~c~~~~~~~~~sW~~~~~~ 307 (717)
+.+.. .. .....+..+++++++.|+.||++|.+.. |
T Consensus 118 l~~~l---~~-~~~~l~~~~~~~~~~~~~~a~~~~~~e~----------------------------------~------ 153 (355)
T 3beh_A 118 LGRVL---AN-EARNLIGVTTLFGVVLFAVALAAYVIER----------------------------------D------ 153 (355)
T ss_dssp HHHHH---HH-THHHHHHHHHHHHHHHHHHHHHHHHHHT----------------------------------T------
T ss_pred HHHHH---HH-HHHHHHHHHHHHHHHHHHHHHHHHHhhc----------------------------------C------
Confidence 22211 11 1223344445566778999999998641 1
Q ss_pred hhcccccCcCCCCCccchhhhhhhhhhhhcCCCCcchHHHHHHHHHHHHHhhccccCCCCccCchhHHHHHHHHHHHHHH
Q 005042 308 IIDHKCHAMEGNPEFNFGIYLKAITYEIHLSGKSGQFLSKLFYCLWFGLQNLSTLGQGLKTSTYIQEIIFSILIGIAGLV 387 (717)
Q Consensus 308 ~l~~~c~~~~~~~~f~~giy~~~~~~~v~~~g~~~~~~~~Y~~slywal~tlttvGygd~~~~~~~E~~f~i~i~i~G~~ 387 (717)
. ..+.+..|..|+||+++||||+||||++|.+..|++++++++++|++
T Consensus 154 -~-------------------------------~~~~f~~~~~s~y~~~~t~ttvGygd~~p~t~~~~~~~~~~~~~g~~ 201 (355)
T 3beh_A 154 -I-------------------------------QPEKFGSIPQAMWWAVVTLSTTGYGDTIPQSFAGRVLAGAVMMSGIG 201 (355)
T ss_dssp -T-------------------------------CHHHHSSHHHHHHHHHHHHTTCCCSSSCCCSHHHHHHHHHHHHHHHH
T ss_pred -C-------------------------------CCcccccHHHHHHHHHhheeecCCCCCCCCChhHHHHHHHHHHHHHH
Confidence 0 01224468899999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHhhhcCCCHHHHHHhCChhHHHHHHH
Q 005042 388 LLALLIGNMQTYLTSLTVRLEEMRIKRRDSEQWMHHRWLPQDLRERVRRYDHFKWLETRGVDEEHLVQNLPKDLRRDIKR 467 (717)
Q Consensus 388 lfa~lIg~~~~~l~~~~~~~~e~~~k~~~~~~~m~~~~lp~~L~~rV~~y~~y~w~~~~~~de~~ll~~Lp~~Lr~~I~~ 467 (717)
++++++|.+.+.++....+ +++.+
T Consensus 202 ~~~~~~~~i~~~~~~~~~~----------------------------~~~~~---------------------------- 225 (355)
T 3beh_A 202 IFGLWAGILATGFYQEVRR----------------------------GDFVR---------------------------- 225 (355)
T ss_dssp HHHHHHHHHHHHHHHHHHH----------------------------HHHHH----------------------------
T ss_pred HHHHHHHHHHHHHHHHHHH----------------------------Hhhcc----------------------------
Confidence 9999999998877532111 00000
Q ss_pred HHHHHHhccCcCCCCCcHHHHHHHHhhceeEEecCCcEEEccCCCcceEEEEEeeEEEEEEecCCeeeeeeeeecCCCCe
Q 005042 468 HLCLNLVRRVPLFANMDERLLDAICERLKPSLCTEGTCVVREGDPVVEMLLIIRGSLESVTTDGGRTGFYNRGMLKEGDF 547 (717)
Q Consensus 468 ~l~~~lL~~iplF~~ls~~~l~~l~~~l~~~~~~~ge~Ii~eGd~~~~myfI~~G~v~v~~~~~g~e~~~~~~~l~~Gd~ 547 (717)
..+.++++|+|+++++++++.++..++.+.++|||.|+++||+++++|||.+|.++++..+ + ..+++||+
T Consensus 226 --~~~~l~~~~lf~~ls~~~l~~l~~~~~~~~~~~ge~I~~~G~~~~~ly~I~~G~v~v~~~~---~-----~~l~~G~~ 295 (355)
T 3beh_A 226 --NWQLVAAVPLFQKLGPAVLVEIVRALRARTVPAGAVICRIGEPGDRMFFVVEGSVSVATPN---P-----VELGPGAF 295 (355)
T ss_dssp --HHC---------------------------------------------------------------------------
T ss_pred --cchhhhcccccccCCHHHHHHHHHhceEEEECCCCEEEeCCCcCceEEEEEeeEEEEEECC---e-----eEECCCCE
Confidence 2467888999999999999999999999999999999999999999999999999998654 1 47899999
Q ss_pred ecHHhHhhhcCCCCCCCCCCcccEEEEcceeEEEEEcHHHHHHHHHhcHHHHHHHHHHHHH
Q 005042 548 CGEELLTWALDPKSVTNLPLSTRTVRALDEVEAFSLRAEELKFVASQFRRLHSRQVQHTFR 608 (717)
Q Consensus 548 fGe~~l~~~l~~~~~~n~p~s~~tv~A~t~~el~~L~~~df~~ll~~~P~l~~k~l~~~~r 608 (717)
|||.++ +.+.+ ++.+++|.++|+++.|++++|.++++++|++.....+...+
T Consensus 296 fGe~~~---l~~~~------~~~~~~A~~~~~l~~i~~~~f~~ll~~~p~~~~~l~~~l~~ 347 (355)
T 3beh_A 296 FGEMAL---ISGEP------RSATVSAATTVSLLSLHSADFQMLCSSSPEIAEIFRKTALE 347 (355)
T ss_dssp -------------------------------------------------------------
T ss_pred EeehHH---hCCCC------cceEEEECccEEEEEEeHHHHHHHHHHCHHHHHHHHHHHHH
Confidence 999988 55655 88999999999999999999999999999887666555444
No 2
>3ukn_A Novel protein similar to vertebrate potassium VOL channel, subfamily H (EAG-related)...; KCNH, ELK, ERG, CNBD, CNBHD, C-linker, ION channel; 2.20A {Danio rerio} PDB: 3ukt_B 3ukv_B
Probab=99.98 E-value=2.9e-32 Score=273.97 Aligned_cols=205 Identities=21% Similarity=0.385 Sum_probs=177.5
Q ss_pred HHHHHHhhHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHhhhcCCCHHHHHHhCChhHHHHHHHHHHHHHhcc
Q 005042 397 QTYLTSLTVRLEEMRIKRRDSEQWMHHRWLPQDLRERVRRYDHFKWLETRGVDEEHLVQNLPKDLRRDIKRHLCLNLVRR 476 (717)
Q Consensus 397 ~~~l~~~~~~~~e~~~k~~~~~~~m~~~~lp~~L~~rV~~y~~y~w~~~~~~de~~ll~~Lp~~Lr~~I~~~l~~~lL~~ 476 (717)
++++++++.+..+|+++++.+++||++++||++||.||++|++|.|.++++.|++++++.||++||.+|..+++..++ +
T Consensus 1 g~ii~~~~~~~~~~~~~~~~i~~ym~~~~i~~~l~~rv~~y~~~~~~~~~~~~~~~il~~Lp~~L~~~i~~~~~~~l~-~ 79 (212)
T 3ukn_A 1 GAMDQRMYSRRSLYHTRTKDLKDFIRVHRLPKALAQRMLECFQTTWSVNNGIDVSELLKDFPDELRADIAMHLNKELL-Q 79 (212)
T ss_dssp -----------CHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCCTGGGCCCCCTTTTSCHHHHHHHHTTCCCGGG-G
T ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhcCCCCHHHHHHHcCHHHHHHHHHHHHHHHH-h
Confidence 468899999999999999999999999999999999999999999999999999999999999999999999998887 8
Q ss_pred CcCCCCCcHHHHHHHHhhceeEEecCCcEEEccCCCcceEEEEEeeEEEEEEecCCeeeeeeeeecCCCCeecHHhHhhh
Q 005042 477 VPLFANMDERLLDAICERLKPSLCTEGTCVVREGDPVVEMLLIIRGSLESVTTDGGRTGFYNRGMLKEGDFCGEELLTWA 556 (717)
Q Consensus 477 iplF~~ls~~~l~~l~~~l~~~~~~~ge~Ii~eGd~~~~myfI~~G~v~v~~~~~g~e~~~~~~~l~~Gd~fGe~~l~~~ 556 (717)
+|+|.++++++++.++..++.+.|+||++|+++||+++.+|||.+|.|+++.. | .+ +..+++|++|||.++
T Consensus 80 ~~~f~~l~~~~l~~l~~~~~~~~~~~ge~I~~~G~~~~~ly~I~~G~v~v~~~--~--~~--~~~l~~G~~fGe~~~--- 150 (212)
T 3ukn_A 80 LPLFESASRGCLRSLSLIIKTSFCAPGEFLIRQGDALQAIYFVCSGSMEVLKD--N--TV--LAILGKGDLIGSDSL--- 150 (212)
T ss_dssp SGGGTTCCHHHHHHHHHHCEEEEECTTCEEECTTSBCCEEEEEEECCEEEESS--S--CE--EEEECTTCEEECSCC---
T ss_pred cHHhhcCCHHHHHHHHHHhheEEeCCCCEEEECCCcccEEEEEEecEEEEEEC--C--eE--EEEecCCCCcCcHHh---
Confidence 99999999999999999999999999999999999999999999999999862 3 22 789999999999987
Q ss_pred cCCCCCCCCCCcccEEEEcceeEEEEEcHHHHHHHHHhcHHHHHHHHHHHHHhhhhhhh
Q 005042 557 LDPKSVTNLPLSTRTVRALDEVEAFSLRAEELKFVASQFRRLHSRQVQHTFRFYSHQWR 615 (717)
Q Consensus 557 l~~~~~~n~p~s~~tv~A~t~~el~~L~~~df~~ll~~~P~l~~k~l~~~~r~~s~~~~ 615 (717)
+.+.+ ++++++++|+++|+++.|++++|.++++++|++..+.++...+.++...+
T Consensus 151 ~~~~~----~~~~~~v~a~~~~~l~~i~~~~f~~ll~~~p~~~~~~~~~l~~~l~~~lr 205 (212)
T 3ukn_A 151 TKEQV----IKTNANVKALTYCDLQYISLKGLREVLRLYPEYAQKFVSEIQHDLTYNLR 205 (212)
T ss_dssp SSSSC----CBBCSEEEESSCEEEEEEEHHHHHHHHHHCHHHHHHHHHHHHHHEEEECB
T ss_pred ccCCC----CCcceEEEEcccEEEEEEeHHHHHHHHHHChHHHHHHHHHHHHhhccccc
Confidence 44440 12889999999999999999999999999999988888887776665444
No 3
>2ptm_A Hyperpolarization-activated (IH) channel; ION channel, cyclic nucleotide binding domain, C-linker, CAM SPHCN1, HCN; HET: CMP; 1.93A {Strongylocentrotus purpuratus}
Probab=99.97 E-value=6.2e-31 Score=261.39 Aligned_cols=192 Identities=22% Similarity=0.423 Sum_probs=176.1
Q ss_pred HhhHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHhhhcCCCHHHHHHhCChhHHHHHHHHHHHHHhccCcCCC
Q 005042 402 SLTVRLEEMRIKRRDSEQWMHHRWLPQDLRERVRRYDHFKWLETRGVDEEHLVQNLPKDLRRDIKRHLCLNLVRRVPLFA 481 (717)
Q Consensus 402 ~~~~~~~e~~~k~~~~~~~m~~~~lp~~L~~rV~~y~~y~w~~~~~~de~~ll~~Lp~~Lr~~I~~~l~~~lL~~iplF~ 481 (717)
+++.+..+|+++++.+++||+++++|.+||.||++|++|.|. +++.+|+++++.||++||.+|..+++.++++++|+|.
T Consensus 2 ~~~~~~~~~~~~~~~i~~~m~~~~i~~~l~~rv~~y~~~~~~-~~~~~e~~il~~l~~~Lr~~i~~~~~~~~l~~~~~f~ 80 (198)
T 2ptm_A 2 AMDSSSRQYREKLKQVEEYMQYRKLPSHLRNKILDYYEYRYR-GKMFDERHIFREVSESIRQDVANYNCRDLVASVPFFV 80 (198)
T ss_dssp --CHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHT-TCCCCSHHHHHHSCHHHHHHHHHHHTHHHHHHCGGGT
T ss_pred CCCHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHc-ccCCCHHHHHHHcCHHHHHHHHHHHHHHHHhcCcchh
Confidence 578889999999999999999999999999999999999998 5889999999999999999999999999999999999
Q ss_pred CCcHHHHHHHHhhceeEEecCCcEEEccCCCcceEEEEEeeEEEEEEecCCeeeeeeeeecCCCCeecHHhHhhhcCCCC
Q 005042 482 NMDERLLDAICERLKPSLCTEGTCVVREGDPVVEMLLIIRGSLESVTTDGGRTGFYNRGMLKEGDFCGEELLTWALDPKS 561 (717)
Q Consensus 482 ~ls~~~l~~l~~~l~~~~~~~ge~Ii~eGd~~~~myfI~~G~v~v~~~~~g~e~~~~~~~l~~Gd~fGe~~l~~~l~~~~ 561 (717)
+++++++..++..++.+.|+||++|+++||+++.+|||.+|.|+++.. +|+ + +..+++|++|||.++ +.+.+
T Consensus 81 ~l~~~~l~~l~~~~~~~~~~~ge~I~~~G~~~~~ly~I~~G~v~~~~~-~g~--~--~~~l~~G~~fGe~~~---~~~~~ 152 (198)
T 2ptm_A 81 GADSNFVTRVVTLLEFEVFQPADYVIQEGTFGDRMFFIQQGIVDIIMS-DGV--I--ATSLSDGSYFGEICL---LTRER 152 (198)
T ss_dssp TCCHHHHHHHHHHCEEEEECTTCEEECTTSCCSEEEEEEECCEEEECT-TSC--E--EEEECTTCEESCHHH---HHSSC
T ss_pred cCCHHHHHHHHHhccceeeCCCCEEEECCCcCcEEEEEEeCEEEEEec-CCe--E--EEEecCCCEechHHH---cCCCc
Confidence 999999999999999999999999999999999999999999999874 444 2 789999999999988 44455
Q ss_pred CCCCCCcccEEEEcceeEEEEEcHHHHHHHHHhcHHHHHHHHHHHHH
Q 005042 562 VTNLPLSTRTVRALDEVEAFSLRAEELKFVASQFRRLHSRQVQHTFR 608 (717)
Q Consensus 562 ~~n~p~s~~tv~A~t~~el~~L~~~df~~ll~~~P~l~~k~l~~~~r 608 (717)
++++++|.++|+++.|++++|.++++++|++....++.+.+
T Consensus 153 ------~~~~~~a~~~~~l~~i~~~~f~~ll~~~p~~~~~~~~~~~~ 193 (198)
T 2ptm_A 153 ------RVASVKCETYCTLFSLSVQHFNQVLDEFPAMRKTMEEIAVR 193 (198)
T ss_dssp ------CSSEEEESSCEEEEEEEHHHHHHHHHHCHHHHHHHHHHHHT
T ss_pred ------cceEEEEeeEEEEEEEeHHHHHHHHHHChHHHHHHHHHHHH
Confidence 88999999999999999999999999999987666655443
No 4
>3bpz_A Potassium/sodium hyperpolarization-activated cyclic nucleotide-gated channel 2; CNBD, C-linker, pacemaker, HCN, HCN2, CAP, PKA, CAMP, ION channel; HET: CMP; 1.65A {Mus musculus} PDB: 3ffq_A 1q3e_A* 1q43_A* 1q5o_A* 3u10_A* 2q0a_A* 3etq_A* 3u11_A* 3otf_A* 3u0z_A*
Probab=99.97 E-value=1.1e-30 Score=260.60 Aligned_cols=190 Identities=26% Similarity=0.428 Sum_probs=172.2
Q ss_pred HHhhHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHhhhcCCCHHHHHHhCChhHHHHHHHHHHHHHhccCcCC
Q 005042 401 TSLTVRLEEMRIKRRDSEQWMHHRWLPQDLRERVRRYDHFKWLETRGVDEEHLVQNLPKDLRRDIKRHLCLNLVRRVPLF 480 (717)
Q Consensus 401 ~~~~~~~~e~~~k~~~~~~~m~~~~lp~~L~~rV~~y~~y~w~~~~~~de~~ll~~Lp~~Lr~~I~~~l~~~lL~~iplF 480 (717)
++++.+..+|+++++++++||++++||++|+.||++|++|.|. +++.+|+++++.||++||.+|..+++.++++++|+|
T Consensus 2 ~~~~~~~~~~~~~~~~i~~~m~~~~i~~~l~~rv~~y~~~~~~-~~~~~e~~il~~l~~~L~~~i~~~~~~~~l~~~~~f 80 (202)
T 3bpz_A 2 SAMDSSRRQYQEKYKQVEQYMSFHKLPADFRQKIHDYYEHRYQ-GKMFDEDSILGELNGPLREKIVNFNCRKLVASMPLF 80 (202)
T ss_dssp ---CHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHT-TCCCCHHHHHHHSCHHHHHHHHHHHTHHHHHTCHHH
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHh-ccCCCHHHHHHHcCHHHHHHHHHHHHHHHHhcCCch
Confidence 5788999999999999999999999999999999999999998 588999999999999999999999999999999999
Q ss_pred CCCcHHHHHHHHhhceeEEecCCcEEEccCCCcceEEEEEeeEEEEEEecCCeeeeeeeeecCCCCeecHHhHhhhcCCC
Q 005042 481 ANMDERLLDAICERLKPSLCTEGTCVVREGDPVVEMLLIIRGSLESVTTDGGRTGFYNRGMLKEGDFCGEELLTWALDPK 560 (717)
Q Consensus 481 ~~ls~~~l~~l~~~l~~~~~~~ge~Ii~eGd~~~~myfI~~G~v~v~~~~~g~e~~~~~~~l~~Gd~fGe~~l~~~l~~~ 560 (717)
.+++++++..++..++...|+||++|+++||+++.+|||.+|.|+++. .+|++ ..+++|++|||.++ +.+.
T Consensus 81 ~~l~~~~l~~l~~~~~~~~~~~ge~I~~~g~~~~~ly~I~~G~v~v~~-~~g~~-----~~l~~G~~fGe~~~---~~~~ 151 (202)
T 3bpz_A 81 ANADPNFVTAMLTKLKFEVFQPGDYIIREGTIGKKMYFIQHGVVSVLT-KGNKE-----MKLSDGSYFGEICL---LTRG 151 (202)
T ss_dssp HTSCHHHHHHHHHHCEEEEECTTCEEECTTSBCCEEEEEEECEEEEEC-TTSCC-----EEEETTCEECHHHH---HHCS
T ss_pred hcCCHHHHHHHHHhCCceEECCCCEEEECCCcCCeEEEEeccEEEEEE-CCCeE-----EEEcCCCEeccHHH---hcCC
Confidence 999999999999999999999999999999999999999999999985 44543 36899999999988 4444
Q ss_pred CCCCCCCcccEEEEcceeEEEEEcHHHHHHHHHhcHHHHHHHHHHH
Q 005042 561 SVTNLPLSTRTVRALDEVEAFSLRAEELKFVASQFRRLHSRQVQHT 606 (717)
Q Consensus 561 ~~~n~p~s~~tv~A~t~~el~~L~~~df~~ll~~~P~l~~k~l~~~ 606 (717)
+ ++++++|.++|+++.|++++|.++++++|++....++.+
T Consensus 152 ~------~~~~v~a~~~~~l~~i~~~~f~~ll~~~p~~~~~~~~~~ 191 (202)
T 3bpz_A 152 R------RTASVRADTYCRLYSLSVDNFNEVLEEYPMMRRAFETVA 191 (202)
T ss_dssp B------CSSEEEESSCEEEEEEEHHHHHHHHHHSGGGHHHHHHHH
T ss_pred C------cccEEEEeeEEEEEEEEHHHHHHHHHHCHHHHHHHHHHH
Confidence 4 889999999999999999999999999998765554443
No 5
>1orq_C Potassium channel; voltage-dependent, KVAP, FAB complex, MEM protein; 3.20A {Aeropyrum pernix} SCOP: f.14.1.1 PDB: 2a0l_A
Probab=99.88 E-value=3.3e-22 Score=202.78 Aligned_cols=211 Identities=14% Similarity=0.175 Sum_probs=143.4
Q ss_pred HHHHHHHHHHHHHHhhhccccccccccCCccccccccchhHHHHHHHHHHHHHHHHhHhhhceeeEEcCCCcccCCCeEe
Q 005042 79 FWNRLFVFTCFISVSIDPLFFYLPFFDKENYCLGMDVQLAAAITTFRSILDCIYSCRIPFQFRTAYIAPSSRVFGRGELV 158 (717)
Q Consensus 79 ~W~~~~li~~i~~~~v~Pl~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~Di~f~~Di~l~F~tay~~~~s~~~~~G~lV 158 (717)
.||.++++++++++++.++....+. +......+..++.+++++|.+|++++|.++.
T Consensus 9 ~f~~~i~~lil~~~~~~~~~~~~~~----------~~~~~~~l~~~d~~~~~iF~~e~~lr~~~~~-------------- 64 (223)
T 1orq_C 9 LVELGVSYAALLSVIVVVVECTMQL----------SGEYLVRLYLVDLILVIILWADYAYRAYKSG-------------- 64 (223)
T ss_dssp HHHTHHHHHHHHHHHHHHHHHHHHH----------TTCTTTHHHHHHHHHHHHHHHHHHHHHHTTS--------------
T ss_pred hHHHHHHHHHHHHHHHHHHHHhccc----------ChhhhhHHHHHHHHHHHHHHHHHHHHHcccc--------------
Confidence 4899999999999988777632211 2223457788999999999999999999861
Q ss_pred eCHHHHHHHHHhhhhHHHhhhccchhhhhhheeecCccchhhhhhhhhhHHHHHhHhhhhhhhhhhhhhhhhhh-hHHHH
Q 005042 159 VDPALISRRYFRRLFLVDFLSVLPIPQLLVSVYLSDTRAKVFSTKEALPLLIILQYVPRILRIFPLISELKKTV-GVFVE 237 (717)
Q Consensus 159 ~d~~~Ia~rYl~~~F~iDlls~lPl~~i~~~~~~~~~~~~~~~~~~~Lrli~l~q~l~Rl~ri~~l~~~l~~~~-~~~~~ 237 (717)
..++|+++ +++|+++++|+...... +... .....+|++|++| +.|++|+.+..++..+.. .....
T Consensus 65 -----~~~~y~~~-~iiDllailP~~~~~~~------~~~~-~~~~~lr~lRllR-llR~~r~~~~~~~~~~~l~~~~~~ 130 (223)
T 1orq_C 65 -----DPAGYVKK-TLYEIPALVPAGLLALI------EGHL-AGLGLFRLVRLLR-FLRILLIISRGSKFLSAIADAADK 130 (223)
T ss_dssp -----CHHHHHHH-HHHHCTTHHHHHHHHHH------HHHH-HTTTCHHHHHHHH-HHHHHHHHHSCSSHHHHHHHHHHH
T ss_pred -----cHHHHHHH-hHHHHHHHHHHHHHHHH------hcch-hHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 13799998 99999999999765431 0010 1122344443332 334444433222211111 11111
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhhhhHHhhcccCCCCcccccccCCCCCCccccccchhhhhcccccCcC
Q 005042 238 SALGGAAYYLLCYIVCSHIVGAFWYLLAVERNFTCWQQACNQTGRCSHSFLYCHNTNFGGFDDWKQTREHIIDHKCHAME 317 (717)
Q Consensus 238 ~~~~~~~~~lll~~l~~H~~aC~wy~~~~~~~~~~w~~~c~~~~~c~~~~l~c~~~~~~~~~sW~~~~~~~l~~~c~~~~ 317 (717)
.+....+++.++..|+.||++|++.. ++.++|
T Consensus 131 ---~~l~~~~~~~~~~~~~~~~~~~~~e~-----------------------------~~~~~~---------------- 162 (223)
T 1orq_C 131 ---IRFYHLFGAVMLTVLYGAFAIYIVEY-----------------------------PDPNSS---------------- 162 (223)
T ss_dssp ---HHHHHHHHHHHHHHHHHHHHHHHTTS-----------------------------SSTTCS----------------
T ss_pred ---HHHHHHHHHHHHHHHHHHHHHHHHHh-----------------------------CCcCCC----------------
Confidence 12333344455678899998887421 001111
Q ss_pred CCCCccchhhhhhhhhhhhcCCCCcchHHHHHHHHHHHHHhhccccCCCCccCchhHHHHHHHHHHHHHHHHHHHHHHHH
Q 005042 318 GNPEFNFGIYLKAITYEIHLSGKSGQFLSKLFYCLWFGLQNLSTLGQGLKTSTYIQEIIFSILIGIAGLVLLALLIGNMQ 397 (717)
Q Consensus 318 ~~~~f~~giy~~~~~~~v~~~g~~~~~~~~Y~~slywal~tlttvGygd~~~~~~~E~~f~i~i~i~G~~lfa~lIg~~~ 397 (717)
...|..|+||++.|+||+||||++|.|..|++++++.+++|++++|+.+|+++
T Consensus 163 ---------------------------~~~~~~s~y~~~~t~tTvGyGdi~P~t~~~~~~~~~~~~~G~~~~~~~i~~i~ 215 (223)
T 1orq_C 163 ---------------------------IKSVFDALWWAVVTATTVGYGDVVPATPIGKVIGIAVMLTGISALTLLIGTVS 215 (223)
T ss_dssp ---------------------------CCSHHHHHHHHHHHHTTCCCCSSCCCSHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ---------------------------cCcchhHHHhHHhHHhccCCCCCCCCCHhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 23688899999999999999999999999999999999999999999999999
Q ss_pred HHHHH
Q 005042 398 TYLTS 402 (717)
Q Consensus 398 ~~l~~ 402 (717)
+.+++
T Consensus 216 ~~~~~ 220 (223)
T 1orq_C 216 NMFQK 220 (223)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 99875
No 6
>4f8a_A Potassium voltage-gated channel subfamily H membe; probable regulatory domain of potassium channel, membrane PR transport protein; 2.20A {Mus musculus}
Probab=99.81 E-value=3.2e-19 Score=169.58 Aligned_cols=142 Identities=23% Similarity=0.399 Sum_probs=120.6
Q ss_pred HHHHHHhCChhHHHHHHHHHHHHHhccCcCCCCCcHHHHHHHHhhceeEEecCCcEEEccCCCcceEEEEEeeEEEEEEe
Q 005042 450 EEHLVQNLPKDLRRDIKRHLCLNLVRRVPLFANMDERLLDAICERLKPSLCTEGTCVVREGDPVVEMLLIIRGSLESVTT 529 (717)
Q Consensus 450 e~~ll~~Lp~~Lr~~I~~~l~~~lL~~iplF~~ls~~~l~~l~~~l~~~~~~~ge~Ii~eGd~~~~myfI~~G~v~v~~~ 529 (717)
.+++++.||++||.++..+++.++++++|+|.+++++.++.++..++.+.|++|++|+++||+++.+|||.+|.|+++..
T Consensus 5 ~~~il~~lp~~l~~~i~~~~~~~~l~~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~i~~~g~~~~~~y~i~~G~v~~~~~ 84 (160)
T 4f8a_A 5 TEKVLQICPKDMRADICVHLNRKVFKEHPAFRLASDGCLRALAMEFQTVHCAPGDLIYHAGESVDSLCFVVSGSLEVIQD 84 (160)
T ss_dssp ----------CCHHHHHHHHTHHHHTTCGGGTTCCHHHHHHHHTTCEEEEECTTCEEECTTSBCCEEEEEEESEEEEEET
T ss_pred hHHHHHHCCHHHHHHHHHHHHHHHHHhCHhhhhCCHHHHHHHHHhceeeeeCCCCEEEeCCCCccEEEEEEeeEEEEEEC
Confidence 35699999999999999999999999999999999999999999999999999999999999999999999999999872
Q ss_pred cCCeeeeeeeeecCCCCeecHHhHhhhcCC--CCCCCCCCcccEEEEcceeEEEEEcHHHHHHHHHhcHHHHHHHHHHH
Q 005042 530 DGGRTGFYNRGMLKEGDFCGEELLTWALDP--KSVTNLPLSTRTVRALDEVEAFSLRAEELKFVASQFRRLHSRQVQHT 606 (717)
Q Consensus 530 ~~g~e~~~~~~~l~~Gd~fGe~~l~~~l~~--~~~~n~p~s~~tv~A~t~~el~~L~~~df~~ll~~~P~l~~k~l~~~ 606 (717)
+ .+ +..+++|++||+.++ +.+ .+ +.++++|.++|+++.|++++|.++++++|++....++..
T Consensus 85 --~--~~--~~~~~~G~~fG~~~~---~~~~~~~------~~~~~~a~~~~~v~~i~~~~~~~l~~~~p~~~~~~~~~l 148 (160)
T 4f8a_A 85 --D--EV--VAILGKGDVFGDVFW---KEATLAQ------SCANVRALTYCDLHVIKRDALQKVLEFYTAFSHSFSRNL 148 (160)
T ss_dssp --T--EE--EEEEETTCEEECCTT---TCSSCCB------CSSEEEESSCEEEEEEEHHHHHHHHHHCHHHHHHHHHHC
T ss_pred --C--EE--EEEecCCCEeCcHHH---hcCcccc------eEEEEEECCceEEEEEcHHHHHHHHHHHHHHHHHHHHHH
Confidence 2 22 789999999999987 444 34 889999999999999999999999999999877666654
No 7
>2r9r_B Paddle chimera voltage gated potassium channel KV; voltage sensor, voltage dependent, ION CH shaker, membrane protein, eukaryotic; HET: NAP PGW; 2.40A {Rattus norvegicus} PDB: 3lnm_B* 3lut_B* 2a79_B*
Probab=99.79 E-value=7.5e-19 Score=198.78 Aligned_cols=293 Identities=15% Similarity=0.177 Sum_probs=149.8
Q ss_pred cCC-ChHHHHHHHHHHHHHHHHHhhhccccccccccCCc----ccc-------------ccccchhHHHHHHHHHHHHHH
Q 005042 71 DPQ-DRSLLFWNRLFVFTCFISVSIDPLFFYLPFFDKEN----YCL-------------GMDVQLAAAITTFRSILDCIY 132 (717)
Q Consensus 71 ~P~-s~~~~~W~~~~li~~i~~~~v~Pl~~~~~~~~~~~----~c~-------------~~~~~~~~~~~~~~~~~Di~f 132 (717)
+|. |.....|+.++++++++++++..+.-+ |...... .+- .........+.+++.++.++|
T Consensus 174 ~p~sS~~a~~f~~~~i~~Illsii~~~leT~-p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ie~i~~~iF 252 (514)
T 2r9r_B 174 YPESSGPARIIAIVSVMVILISIVSFCLETL-PIFRDENEDMHGGGVTFHTYSQSTIGYQQSTSFTDPFFIVETLCIIWF 252 (514)
T ss_dssp CTTSCHHHHHHHHHHHHHHHHHHHHHHHTTC-HHHHTCSTTTTSCCCCHHHHHHHHHSSCCCTTCCCHHHHHHHHHHHHH
T ss_pred CCCCcHHHHHHHHHHHHHHHHHHHHhhhhcc-ccccccccccccccccccccccccccccccchhhhHHHHHHHHHHHHH
Confidence 465 567788999999999998888777632 2211100 000 000112346788999999999
Q ss_pred HHhHhhhceeeEEcCCCcccCCCeEeeCHHHHHHHHHhh-hhHHHhhhccchhhhhhheeecCccchhhhhhhhhhHHHH
Q 005042 133 SCRIPFQFRTAYIAPSSRVFGRGELVVDPALISRRYFRR-LFLVDFLSVLPIPQLLVSVYLSDTRAKVFSTKEALPLLII 211 (717)
Q Consensus 133 ~~Di~l~F~tay~~~~s~~~~~G~lV~d~~~Ia~rYl~~-~F~iDlls~lPl~~i~~~~~~~~~~~~~~~~~~~Lrli~l 211 (717)
.+|++++|.++- . .++|+++ |.++|+++++|+.+.+........+.........||++|+
T Consensus 253 tiE~ilR~~~~~---~----------------k~~Y~ks~wniiDli~iip~~i~l~~~~~~~~~~~~~~~~~~lrvlRl 313 (514)
T 2r9r_B 253 SFEFLVRFFACP---S----------------KAGFFTNIMNIIDIVAIIPYYVTIFLTESNKSVLQFQNVRRVVQIFRI 313 (514)
T ss_dssp HHHHHHHHHHSS---C----------------SSSSTTSHHHHHHHHTTHHHHHHHHHHHTSCSHHHHHTTHHHHHHHHH
T ss_pred HHHHHHHHHhCC---c----------------HHHHHhchhHHHHHHHHHHHHHHHHhhhccccchhhhhHHHHHHHHHH
Confidence 999999998751 0 1479998 8999999999986554421110001100111233444433
Q ss_pred HhHhhhhhhhhhhhhh---hhhhhhHHHHhhHHHHHHHHH-HHHHHHHHHHHHHHHHhHhhhhhhhHHhhcccCCCCccc
Q 005042 212 LQYVPRILRIFPLISE---LKKTVGVFVESALGGAAYYLL-CYIVCSHIVGAFWYLLAVERNFTCWQQACNQTGRCSHSF 287 (717)
Q Consensus 212 ~q~l~Rl~ri~~l~~~---l~~~~~~~~~~~~~~~~~~ll-l~~l~~H~~aC~wy~~~~~~~~~~w~~~c~~~~~c~~~~ 287 (717)
.|++|++++.+. ++.....+.. .. ..+..++ +.++..+++||++|++..
T Consensus 314 ----lRvlRilkL~r~~~~l~~l~~tl~~-s~-~~l~~ll~~l~i~~~if~~~~~~~e~--------------------- 366 (514)
T 2r9r_B 314 ----MRILRIFKLSRHSKGLQILGQTLKA-SM-RELGLLIFFLFIGVILFSSAVYFAEA--------------------- 366 (514)
T ss_dssp ----HGGGGGGGGGGSCHHHHHHHHHHHH-TH-HHHHHHHHHHHHHHHHHHHHHHHHHT---------------------
T ss_pred ----HHHHHHHHHhhhhhHHHHHHHHHHH-HH-HHHHHHHHHHHHHHHHHHhhhheeec---------------------
Confidence 344444444433 2221111111 11 1122222 233457778887775310
Q ss_pred ccccCCCCCCccccccchhhhhcccccCcCCCCCccchhhhhhhhhhhhcCCCCcchHHHHHHHHHHHHHhhccccCCCC
Q 005042 288 LYCHNTNFGGFDDWKQTREHIIDHKCHAMEGNPEFNFGIYLKAITYEIHLSGKSGQFLSKLFYCLWFGLQNLSTLGQGLK 367 (717)
Q Consensus 288 l~c~~~~~~~~~sW~~~~~~~l~~~c~~~~~~~~f~~giy~~~~~~~v~~~g~~~~~~~~Y~~slywal~tlttvGygd~ 367 (717)
.... +.+..|..|+||++.||||+||||+
T Consensus 367 --------~~~~-------------------------------------------~~F~s~~~a~y~~~vT~TTvGYGDi 395 (514)
T 2r9r_B 367 --------DERD-------------------------------------------SQFPSIPDAFWWAVVSMTTVGYGDM 395 (514)
T ss_dssp --------TCTT-------------------------------------------CSCSSHHHHHHHHHHHHTTCCCSSS
T ss_pred --------cCCC-------------------------------------------ccccchhhhhheeeeEEEecccCCC
Confidence 0011 1124567899999999999999999
Q ss_pred ccCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHhhhcC
Q 005042 368 TSTYIQEIIFSILIGIAGLVLLALLIGNMQTYLTSLTVRLEEMRIKRRDSEQWMHHRWLPQDLRERVRRYDHFKWLETRG 447 (717)
Q Consensus 368 ~~~~~~E~~f~i~i~i~G~~lfa~lIg~~~~~l~~~~~~~~e~~~k~~~~~~~m~~~~lp~~L~~rV~~y~~y~w~~~~~ 447 (717)
.|.+..+++|+++++++|++++++.+|.+.+.++....+..+. +..+..++++.-...|.....+ + ...+.
T Consensus 396 ~P~t~~gr~f~~~~~l~G~~~l~l~iavI~~~f~~~~~~~~~~-~~~~l~~h~iicg~~~~~~~l~--~------~~~~~ 466 (514)
T 2r9r_B 396 VPTTIGGKIVGSLCAIAGVLTIALPVPVIVSNFNYFYHRETEG-EEQAQYLQVTSSPKIPSSPDLK--K------SRSAS 466 (514)
T ss_dssp CCCSHHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHC---------------------------------------
T ss_pred CCCCcchHhhehhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHhhCCEEEeCCCccchhHH--h------cccCC
Confidence 9999999999999999999999999999999887766533321 1111222333333333322211 1 11223
Q ss_pred CCHHHHHHhCChhHHHHHHHHHH
Q 005042 448 VDEEHLVQNLPKDLRRDIKRHLC 470 (717)
Q Consensus 448 ~de~~ll~~Lp~~Lr~~I~~~l~ 470 (717)
..++.-..+|...++.++.....
T Consensus 467 ~~~~s~~~el~e~~~~~~~~~~~ 489 (514)
T 2r9r_B 467 TISKSDYMEIQEGVNNSNEDFRE 489 (514)
T ss_dssp -----------------------
T ss_pred Ccccccccccccccccccccccc
Confidence 33455556777777776655443
No 8
>3gyd_A CNMP-BD protein, cyclic nucleotide-binding domain; nucleotide binding protein, structural genomics; HET: MSE CMP; 1.79A {Methylobacillus flagellatus KT}
Probab=99.75 E-value=3.3e-17 Score=161.02 Aligned_cols=153 Identities=17% Similarity=0.254 Sum_probs=130.4
Q ss_pred CHHHHHHhCChhHH----HHHHHHHHHHHhccCcCCCCCcHHHHHHHHhhceeEEecCCcEEEccCCCcceEEEEEeeEE
Q 005042 449 DEEHLVQNLPKDLR----RDIKRHLCLNLVRRVPLFANMDERLLDAICERLKPSLCTEGTCVVREGDPVVEMLLIIRGSL 524 (717)
Q Consensus 449 de~~ll~~Lp~~Lr----~~I~~~l~~~lL~~iplF~~ls~~~l~~l~~~l~~~~~~~ge~Ii~eGd~~~~myfI~~G~v 524 (717)
.+..+.++++|+|- .+.......++++++|+|.+++++.++.++..++.+.|++|++|+++|++++.+|||.+|.|
T Consensus 12 ~~~~~~~~~~~dli~~~~~~~~~~~~~~~L~~~~~f~~l~~~~l~~l~~~~~~~~~~~ge~i~~~G~~~~~ly~I~~G~v 91 (187)
T 3gyd_A 12 HENLYFQGMYPDLVHLGGADKYFEEILEIVNKIKLFGDFSNEEVRYLCSYMQCYAAPRDCQLLTEGDPGDYLLLILTGEV 91 (187)
T ss_dssp CHHHHTSTTGGGCEEEEEGGGGHHHHHHHHTTCCSSCCCCHHHHHHHHTTCEEEEECTTCEEECTTSCCCEEEEEEEEEE
T ss_pred ccceeecCCchHHhccCccHHHHHHHHHHHhcCHhhhcCCHHHHHHHHHhcEEEEeCCCCEEEcCCCCCCeEEEEEeCEE
Confidence 35566667776653 44455556789999999999999999999999999999999999999999999999999999
Q ss_pred EEEEe-cCCeeeeeeeeecCCCCeecHHhHhhhcCCCCCCCCCCcccEEEEcceeEEEEEcHHHHHHHHHhcHHHHHHHH
Q 005042 525 ESVTT-DGGRTGFYNRGMLKEGDFCGEELLTWALDPKSVTNLPLSTRTVRALDEVEAFSLRAEELKFVASQFRRLHSRQV 603 (717)
Q Consensus 525 ~v~~~-~~g~e~~~~~~~l~~Gd~fGe~~l~~~l~~~~~~n~p~s~~tv~A~t~~el~~L~~~df~~ll~~~P~l~~k~l 603 (717)
+++.. .+|++.+ +..+++|++||+.++ +.+.+ +.++++|.++|+++.|++++|.++++++|++..+.+
T Consensus 92 ~v~~~~~~g~~~~--~~~~~~G~~fGe~~~---l~~~~------~~~~v~A~~~~~v~~i~~~~~~~l~~~~p~~~~~l~ 160 (187)
T 3gyd_A 92 NVIKDIPNKGIQT--IAKVGAGAIIGEMSM---IDGMP------RSASCVASLPTDFAVLSRDALYQLLANMPKLGNKVL 160 (187)
T ss_dssp EEEEEETTTEEEE--EEEEETTCEESHHHH---HHCCC------CSSEEEEEEEEEEEEEEHHHHHHHHHHCHHHHHHHH
T ss_pred EEEEECCCCCeEE--EEEccCCCeeeeHHH---hCCCC------eeEEEEECCCeEEEEEcHHHHHHHHHHChHHHHHHH
Confidence 99875 4677766 789999999999987 55555 889999999999999999999999999999887777
Q ss_pred HHHHHhhhh
Q 005042 604 QHTFRFYSH 612 (717)
Q Consensus 604 ~~~~r~~s~ 612 (717)
+...+..+.
T Consensus 161 ~~l~~~l~~ 169 (187)
T 3gyd_A 161 IRLLQLLTA 169 (187)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 665554444
No 9
>3ocp_A PRKG1 protein; serine/threonine kinase, TF2I and IRAG, transferase; HET: CMP; 2.49A {Homo sapiens} PDB: 3od0_A* 3ogj_A*
Probab=99.73 E-value=1.8e-17 Score=154.06 Aligned_cols=131 Identities=17% Similarity=0.260 Sum_probs=114.7
Q ss_pred hCChhHHHHHHHHHHHHHhccCcCCCCCcHHHHHHHHhhceeEEecCCcEEEccCCCcceEEEEEeeEEEEEEecCCeee
Q 005042 456 NLPKDLRRDIKRHLCLNLVRRVPLFANMDERLLDAICERLKPSLCTEGTCVVREGDPVVEMLLIIRGSLESVTTDGGRTG 535 (717)
Q Consensus 456 ~Lp~~Lr~~I~~~l~~~lL~~iplF~~ls~~~l~~l~~~l~~~~~~~ge~Ii~eGd~~~~myfI~~G~v~v~~~~~g~e~ 535 (717)
++|..+|.+...+...++++++|+|.+++++.++.++..++.+.|++|++|+++||+++.+|||.+|.|++.. +|+
T Consensus 7 ~~p~~~k~~~~~~~~~~~l~~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~i~~~g~~~~~~y~i~~G~v~~~~--~g~-- 82 (139)
T 3ocp_A 7 TLPFYPKSPQSKDLIKEAILDNDFMKNLELSQIQEIVDCMYPVEYGKDSCIIKEGDVGSLVYVMEDGKVEVTK--EGV-- 82 (139)
T ss_dssp CCCCCCCCHHHHHHHHHHHHHCTTTTTSCHHHHHHHHHHCEEEEECSSCEEECTTSCCCEEEEEEECCEEEEE--TTE--
T ss_pred cCCCCCCCHHHHHHHHHHHhcCHhhhcCCHHHHHHHHHhcEEEecCCCCEEEeCCCcCCEEEEEEeCEEEEEE--CCE--
Confidence 6899999999999999999999999999999999999999999999999999999999999999999999954 333
Q ss_pred eeeeeecCCCCeecHHhHhhhcCCCCCCCCCCcccEEEEcceeEEEEEcHHHHHHHHHhcHHHHHH
Q 005042 536 FYNRGMLKEGDFCGEELLTWALDPKSVTNLPLSTRTVRALDEVEAFSLRAEELKFVASQFRRLHSR 601 (717)
Q Consensus 536 ~~~~~~l~~Gd~fGe~~l~~~l~~~~~~n~p~s~~tv~A~t~~el~~L~~~df~~ll~~~P~l~~k 601 (717)
+ +..+++|++||+.++ +.+.+ +.++++|+++|+++.|++++|.++++++|.++.+
T Consensus 83 ~--~~~~~~G~~fGe~~~---l~~~~------~~~~~~a~~~~~v~~i~~~~~~~l~~~~p~~~r~ 137 (139)
T 3ocp_A 83 K--LCTMGPGKVFGELAI---LYNCT------RTATVKTLVNVKLWAIDRQCFQTIMMRTGLIKHT 137 (139)
T ss_dssp E--EEEECTTCEESCHHH---HHCCC------CSSEEEESSCEEEEEEEHHHHHHHHTC-------
T ss_pred E--EEEeCCCCEeccHHH---HCCCC------cceEEEECcceEEEEEcHHHHHHHHhhChHhhhh
Confidence 2 789999999999987 44555 8899999999999999999999999999977544
No 10
>3dn7_A Cyclic nucleotide binding regulatory protein; structural genomics, APC88869, cyclic nucleotide binding REG protein, PSI-2; 1.80A {Cytophaga hutchinsonii}
Probab=99.73 E-value=4e-17 Score=160.57 Aligned_cols=150 Identities=10% Similarity=0.129 Sum_probs=120.9
Q ss_pred HHHHhccCcCCCCCcHHHHHHHHhhceeEEecCCcEEEccCCCcceEEEEEeeEEEEEEe-cCCeeeeeeeeecCCCCee
Q 005042 470 CLNLVRRVPLFANMDERLLDAICERLKPSLCTEGTCVVREGDPVVEMLLIIRGSLESVTT-DGGRTGFYNRGMLKEGDFC 548 (717)
Q Consensus 470 ~~~lL~~iplF~~ls~~~l~~l~~~l~~~~~~~ge~Ii~eGd~~~~myfI~~G~v~v~~~-~~g~e~~~~~~~l~~Gd~f 548 (717)
...+++.+|.|.+++++.++.++..++.+.|++|++|+++||+++.+|||.+|.|+++.. .+|++.+ +..+++||+|
T Consensus 5 ~~~l~~~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~l~~~G~~~~~~y~i~~G~v~~~~~~~~G~e~~--~~~~~~g~~~ 82 (194)
T 3dn7_A 5 HTALINHIRKFIFLTDEDAGTLSAFFQLKKVRKKETLLKTGEICRINYFVVKGCLRLFFIDEKGIEQT--TQFAIENWWL 82 (194)
T ss_dssp CHHHHHHHHTTSCCCHHHHHHHHTTCEEEEECTTCEEECTTSBCCEEEEEEESEEEEEEECTTSCEEE--EEEEETTCEE
T ss_pred HHHHHHHHHHhCCCCHHHHHHHHHhCEEEEEcCCCEEECCCCeeeEEEEeecCeEEEEEECCCCCEEE--EEEccCCcEE
Confidence 356778889999999999999999999999999999999999999999999999999874 5677776 7899999999
Q ss_pred cHH-hHhhhcCCCCCCCCCCcccEEEEcceeEEEEEcHHHHHHHHHhcHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHH
Q 005042 549 GEE-LLTWALDPKSVTNLPLSTRTVRALDEVEAFSLRAEELKFVASQFRRLHSRQVQHTFRFYSHQWRTWAACFIQATWR 627 (717)
Q Consensus 549 Ge~-~l~~~l~~~~~~n~p~s~~tv~A~t~~el~~L~~~df~~ll~~~P~l~~k~l~~~~r~~s~~~~~~~~~~~q~~~~ 627 (717)
||. ++ +++.| +..+++|+++|+++.|++++|.+++.++|++....++ .+.....
T Consensus 83 ge~~~~---~~~~~------~~~~~~a~~~~~v~~i~~~~~~~l~~~~p~~~~~~~~----------------~~~~~l~ 137 (194)
T 3dn7_A 83 SDYMAF---QKQQP------ADFYIQSVENCELLSITYTEQENLFERIPALERYFRL----------------VYQKSFA 137 (194)
T ss_dssp CCHHHH---HHTCB------CSSEEEESSCEEEEEEEHHHHHHHHHHCTTHHHHHHH----------------HHHHHHH
T ss_pred eehHHH---hcCCC------CceEEEEECCEEEEEEeHHHHHHHHHhCHHHHHHHHH----------------HHHHHHH
Confidence 987 66 45555 7899999999999999999999999999966443333 3344445
Q ss_pred HHHHhhHHHHHHHhhhcccc
Q 005042 628 RKSQRKKATEQRLKEEGERI 647 (717)
Q Consensus 628 ~~~~r~~~~~~~~~~~er~~ 647 (717)
+..++... ....++++||.
T Consensus 138 ~~~~~~~~-l~~~~~~~Rl~ 156 (194)
T 3dn7_A 138 AAQLRSKF-QHMYSKEEQYH 156 (194)
T ss_dssp HHHHHHHH-HHHC-------
T ss_pred HHHHHHHH-HhcCCHHHHHH
Confidence 55666666 78888888874
No 11
>3mdp_A Cyclic nucleotide-binding domain (CNMP-BD) protei; structural genomics, joint center for structural genomics; HET: MSE; 1.90A {Geobacter metallireducens}
Probab=99.71 E-value=5.5e-17 Score=150.67 Aligned_cols=133 Identities=16% Similarity=0.235 Sum_probs=112.9
Q ss_pred HHHhccCcCCCCCcHHHHHHHHhhceeEEecCCcEEEccCCCcceEEEEEeeEEEEEEec-CCeeee-eeeeecCCCCee
Q 005042 471 LNLVRRVPLFANMDERLLDAICERLKPSLCTEGTCVVREGDPVVEMLLIIRGSLESVTTD-GGRTGF-YNRGMLKEGDFC 548 (717)
Q Consensus 471 ~~lL~~iplF~~ls~~~l~~l~~~l~~~~~~~ge~Ii~eGd~~~~myfI~~G~v~v~~~~-~g~e~~-~~~~~l~~Gd~f 548 (717)
.++++++|+|.+++++.++.++..++.+.|++|++|+++|++++.+|||.+|.|+++..+ +|++.+ ..+..+++|++|
T Consensus 5 ~~~l~~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~i~~~g~~~~~~y~i~~G~v~~~~~~~~g~~~~~~~~~~~~~G~~f 84 (142)
T 3mdp_A 5 PERLRVYRFFASLTDEQLKDIALISEEKSFPTGSVIFKENSKADNLMLLLEGGVELFYSNGGAGSAANSTVCSVVPGAIF 84 (142)
T ss_dssp TTGGGGSHHHHTSCHHHHHHHHHTEEEEEECTTCEEECTTSBCCEEEEEEESCEEEECC---------CEEEEECTTCEE
T ss_pred HHHHhhCchhccCCHHHHHHHHHhhcEEecCCCCEEEeCCCCCCcEEEEEeCEEEEEEECCCCCceEeeeEEEecCCCEe
Confidence 357889999999999999999999999999999999999999999999999999998643 343321 015789999999
Q ss_pred cHHhHhhhcCCCCCCCCCCcccEEEEcceeEEEEEcHHHHHHHHHhcHHHHHHHHHHHHHhhhh
Q 005042 549 GEELLTWALDPKSVTNLPLSTRTVRALDEVEAFSLRAEELKFVASQFRRLHSRQVQHTFRFYSH 612 (717)
Q Consensus 549 Ge~~l~~~l~~~~~~n~p~s~~tv~A~t~~el~~L~~~df~~ll~~~P~l~~k~l~~~~r~~s~ 612 (717)
|+.++ +.+.+ +..+++|.++|+++.|++++|.+++.++|++....++...+..++
T Consensus 85 G~~~~---~~~~~------~~~~~~a~~~~~~~~i~~~~~~~l~~~~p~~~~~l~~~l~~~l~~ 139 (142)
T 3mdp_A 85 GVSSL---IKPYH------YTSSARATKPVRVVDINGARLREMSENNQALGQVLMNNVAAAVLA 139 (142)
T ss_dssp CGGGS---STTCB------CSSEEEESSCEEEEEEEHHHHHHHHHHCHHHHHHHHHHHHHHHHH
T ss_pred chHHH---cCCCC------ceEEEEECCcEEEEEEeHHHHHHHHHHChHHHHHHHHHHHHHHHH
Confidence 99988 55555 889999999999999999999999999999988888777766554
No 12
>3idb_B CAMP-dependent protein kinase type II-beta regulatory subunit, CAMP-dependent protein kinase catalytic subunit alpha; PKA, SPR, affinity; HET: TPO SEP ANP; 1.62A {Rattus norvegicus} PDB: 3idc_B*
Probab=99.70 E-value=4e-17 Score=155.81 Aligned_cols=128 Identities=18% Similarity=0.243 Sum_probs=115.8
Q ss_pred HHHHHHHHHHHHhccCcCCCCCcHHHHHHHHhhceeEEecCCcEEEccCCCcceEEEEEeeEEEEEEecCCeeeeeeeee
Q 005042 462 RRDIKRHLCLNLVRRVPLFANMDERLLDAICERLKPSLCTEGTCVVREGDPVVEMLLIIRGSLESVTTDGGRTGFYNRGM 541 (717)
Q Consensus 462 r~~I~~~l~~~lL~~iplF~~ls~~~l~~l~~~l~~~~~~~ge~Ii~eGd~~~~myfI~~G~v~v~~~~~g~e~~~~~~~ 541 (717)
+.+.......++++++|+|.+++++.++.++..++.+.|++|++|+++||+++.+|||.+|.|+++...+|++.+ +..
T Consensus 28 ~~~~~~~~~~~~l~~~~~f~~l~~~~l~~l~~~~~~~~~~~g~~i~~~G~~~~~~y~i~~G~v~~~~~~~g~~~~--~~~ 105 (161)
T 3idb_B 28 KTDDQRNRLQEACKDILLFKNLDPEQMSQVLDAMFEKLVKEGEHVIDQGDDGDNFYVIDRGTFDIYVKCDGVGRC--VGN 105 (161)
T ss_dssp CCHHHHHHHHHHHTTCHHHHTSCHHHHHHHHHHCEEEEECTTCEEECTTSCCCEEEEEEESEEEEEEEETTEEEE--EEE
T ss_pred CCHHHHHHHHHHHhCCHhhhcCCHHHHHHHHHhcceeEeCCCCEEEeCCCCCcEEEEEEeCEEEEEEcCCCCeEE--EEE
Confidence 344455667889999999999999999999999999999999999999999999999999999999877788776 899
Q ss_pred cCCCCeecHHhHhhhcCCCCCCCCCCcccEEEEcceeEEEEEcHHHHHHHHHhcHHHHH
Q 005042 542 LKEGDFCGEELLTWALDPKSVTNLPLSTRTVRALDEVEAFSLRAEELKFVASQFRRLHS 600 (717)
Q Consensus 542 l~~Gd~fGe~~l~~~l~~~~~~n~p~s~~tv~A~t~~el~~L~~~df~~ll~~~P~l~~ 600 (717)
+++|++||+.++ +.+.+ +..+++|+++|+++.|++++|.++++++|.++.
T Consensus 106 ~~~G~~fGe~~~---~~~~~------~~~~v~A~~~~~~~~i~~~~~~~l~~~~p~~~~ 155 (161)
T 3idb_B 106 YDNRGSFGELAL---MYNTP------RAATITATSPGALWGLDRVTFRRIIVKNNAKKR 155 (161)
T ss_dssp EESCCEECGGGG---TCCCC------CSSEEEESSSEEEEEEEHHHHHHHHHHHHHTSC
T ss_pred cCCCCEechHHH---HcCCC------cccEEEECCCeEEEEEeHHHHHHHHHHCHHHHH
Confidence 999999999988 55665 889999999999999999999999999997643
No 13
>4ev0_A Transcription regulator, CRP family; CAMP binding, winged helix-turn-helix motif, DNA binding, transcription activator; HET: CMP; 2.40A {Thermus thermophilus}
Probab=99.69 E-value=3.6e-16 Score=156.09 Aligned_cols=127 Identities=20% Similarity=0.293 Sum_probs=111.2
Q ss_pred hccCcCCCCCcHHHHHHHHhhceeEEecCCcEEEccCCCcceEEEEEeeEEEEEEe-cCCeeeeeeeeecCCCCeecHHh
Q 005042 474 VRRVPLFANMDERLLDAICERLKPSLCTEGTCVVREGDPVVEMLLIIRGSLESVTT-DGGRTGFYNRGMLKEGDFCGEEL 552 (717)
Q Consensus 474 L~~iplF~~ls~~~l~~l~~~l~~~~~~~ge~Ii~eGd~~~~myfI~~G~v~v~~~-~~g~e~~~~~~~l~~Gd~fGe~~ 552 (717)
|+++|+|.+++++.++.++..++.+.|++|++|+++||+++.+|||.+|.|+++.. .+|++.+ +..+++|++||+.+
T Consensus 1 L~~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~i~~~g~~~~~~y~i~~G~v~~~~~~~~g~~~~--~~~~~~g~~~G~~~ 78 (216)
T 4ev0_A 1 MKGSPLFHGLAPEEVDLALSYFQRRLYPQGKPIFYQGDLGQALYLVASGKVRLFRTHLGGQERT--LALLGPGELFGEMS 78 (216)
T ss_dssp ---CGGGTTCCHHHHHHHHTTCEEEEECTTCEEECTTCBCCEEEEEEESCEEEEEECSSSCEEE--EEEECTTCEECHHH
T ss_pred CCCChhhcCCCHHHHHHHHHhheEEEeCCCCEEEeCCCCCCEEEEEEeCEEEEEEECCCCCEEE--EEEecCCCEEeehh
Confidence 46789999999999999999999999999999999999999999999999999875 5677766 89999999999998
Q ss_pred HhhhcCCCCCCCCCCcccEEEEcceeEEEEEcHHHHHHHHHhcHHHHHHHHHHHHHhhh
Q 005042 553 LTWALDPKSVTNLPLSTRTVRALDEVEAFSLRAEELKFVASQFRRLHSRQVQHTFRFYS 611 (717)
Q Consensus 553 l~~~l~~~~~~n~p~s~~tv~A~t~~el~~L~~~df~~ll~~~P~l~~k~l~~~~r~~s 611 (717)
+ +.+.+ +..+++|.++|+++.|++++|.+++.++|++....++...+.+.
T Consensus 79 ~---~~~~~------~~~~~~a~~~~~v~~i~~~~~~~l~~~~p~~~~~~~~~l~~~~~ 128 (216)
T 4ev0_A 79 L---LDEGE------RSASAVAVEDTELLALFREDYLALIRRLPLVAHNLAALLARRLR 128 (216)
T ss_dssp H---HHCCB------CSSEEEESSSEEEEEEEHHHHHHHHHHCHHHHHHHHHHHHHHHH
T ss_pred h---cCCCC------cceEEEEcCCEEEEEEcHHHHHHHHHHCcHHHHHHHHHHHHHHH
Confidence 7 55555 78999999999999999999999999999987777666655443
No 14
>2pqq_A Putative transcriptional regulator; APC7345, streptomyces coelicolor structural genomics, PSI-2, protein structure initiative; 2.00A {Streptomyces coelicolor A3}
Probab=99.69 E-value=2e-16 Score=147.87 Aligned_cols=123 Identities=24% Similarity=0.371 Sum_probs=110.1
Q ss_pred HHHhccCcCCCCCcHHHHHHHHhhceeEEecCCcEEEccCCCcceEEEEEeeEEEEEEec-CCeeeeeeeeecCCCCeec
Q 005042 471 LNLVRRVPLFANMDERLLDAICERLKPSLCTEGTCVVREGDPVVEMLLIIRGSLESVTTD-GGRTGFYNRGMLKEGDFCG 549 (717)
Q Consensus 471 ~~lL~~iplF~~ls~~~l~~l~~~l~~~~~~~ge~Ii~eGd~~~~myfI~~G~v~v~~~~-~g~e~~~~~~~l~~Gd~fG 549 (717)
.++++++|+|.+++++.++.++..++.+.|++|++|+++|++++.+|||.+|.|+++..+ +|++.+ +..+++|++||
T Consensus 4 ~~~l~~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~i~~~g~~~~~~y~i~~G~v~~~~~~~~g~~~~--~~~~~~g~~~G 81 (149)
T 2pqq_A 4 DDVLRRNPLFAALDDEQSAELRASMSEVTLARGDTLFHEGDPGDRLYVVTEGKVKLHRTSPDGRENM--LAVVGPSELIG 81 (149)
T ss_dssp GGGGTSSTTTTTCCHHHHHHHHHHCEEEEECTTCEEECTTSEECEEEEEEESCEEEEEECTTSSEEE--EEEECTTCEES
T ss_pred HHHhhhChhhhcCCHHHHHHHHHhceEEEeCCCCEEECCCCCCCeEEEEEecEEEEEEECCCCcEEE--EEEcCCcCEec
Confidence 567899999999999999999999999999999999999999999999999999998654 567666 89999999999
Q ss_pred HHhHhhhcCCCCCCCCCCcccEEEEcceeEEEEEcHHHHHHHHHhcHHHHHHHHH
Q 005042 550 EELLTWALDPKSVTNLPLSTRTVRALDEVEAFSLRAEELKFVASQFRRLHSRQVQ 604 (717)
Q Consensus 550 e~~l~~~l~~~~~~n~p~s~~tv~A~t~~el~~L~~~df~~ll~~~P~l~~k~l~ 604 (717)
+.++ +.+.+ +..+++|.++|+++.|++++|.+++.++|++....++
T Consensus 82 ~~~~---~~~~~------~~~~~~a~~~~~~~~i~~~~~~~l~~~~p~~~~~~~~ 127 (149)
T 2pqq_A 82 ELSL---FDPGP------RTATGTALTEVKLLALGHGDLQPWLNVRPEVATALLR 127 (149)
T ss_dssp GGGG---TSCEE------CSSEEEESSCEEEEEEEGGGHHHHHHHCTHHHHHHHH
T ss_pred hHHh---cCCCC------cceEEEEccceEEEEEeHHHHHHHHHhCcHHHHHHHH
Confidence 9987 55555 8899999999999999999999999999977554443
No 15
>1wgp_A Probable cyclic nucleotide-gated ION channel 6; cyclic nucleotide monophosphate, CNMP, CNMP-binding, structural genomics; NMR {Arabidopsis thaliana} SCOP: b.82.3.2
Probab=99.69 E-value=1.9e-17 Score=153.22 Aligned_cols=129 Identities=79% Similarity=1.200 Sum_probs=109.1
Q ss_pred HHhccCcCCCCCcHHHHHHHHhhceeEEecCCcEEEccCCCcceEEEEEeeEEEEEEecCCeeeeeeeeecCCCCeecHH
Q 005042 472 NLVRRVPLFANMDERLLDAICERLKPSLCTEGTCVVREGDPVVEMLLIIRGSLESVTTDGGRTGFYNRGMLKEGDFCGEE 551 (717)
Q Consensus 472 ~lL~~iplF~~ls~~~l~~l~~~l~~~~~~~ge~Ii~eGd~~~~myfI~~G~v~v~~~~~g~e~~~~~~~l~~Gd~fGe~ 551 (717)
++++++|+|..++++.++.++..++.+.|++|++|+++||+++.+|||.+|.|++....+|++.++.+..+.+|++||+.
T Consensus 6 ~~l~~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~i~~~G~~~~~~y~i~~G~v~~~~~~~g~~~~~~~~~l~~G~~fGe~ 85 (137)
T 1wgp_A 6 SGVRRVPLFENMDERLLDAICERLKPCLFTEKSYLVREGDPVNEMLFIIRGRLESVTTDGGRSGFYNRSLLKEGDFCGDE 85 (137)
T ss_dssp CSCSSCSGGGSCCHHHHHHHHHHCBCCCBCTTEEEECTTSBCSEEEEEEECCCEEECCSSCSSSSSCEEECCTTCBSSTH
T ss_pred HHHHcCcchhhCCHHHHHHHHHHheEEEeCCCCEEEeCCCCCCeEEEEEeeEEEEEEcCCCcceeeeeeeecCCCEecHH
Confidence 46889999999999999999999999999999999999999999999999999976566777766222399999999999
Q ss_pred hHhhhcCCCCCCCCCCcccEEEEcceeEEEEEcHHHHHHHHHhcHHHHH
Q 005042 552 LLTWALDPKSVTNLPLSTRTVRALDEVEAFSLRAEELKFVASQFRRLHS 600 (717)
Q Consensus 552 ~l~~~l~~~~~~n~p~s~~tv~A~t~~el~~L~~~df~~ll~~~P~l~~ 600 (717)
++++.+.+.+..+.|.++++++|+++|+++.|++++|.++++++|++++
T Consensus 86 ~l~~~~~~~~~~~~~~~~~~~~A~~~~~~~~i~~~~~~~l~~~~p~l~~ 134 (137)
T 1wgp_A 86 LLTWALDPKSGSNLPSSTRTVKALTEVEAFALIADELKFVASQFRRSGP 134 (137)
T ss_dssp HHHHHHCSSCCSSSCBCSSEEEESSCBEEEEEEHHHHHHHHHHHCCCTT
T ss_pred HHHHHhccccccccccceeEEEEeEEEEEEEECHHHHHHHHHHCHhhHh
Confidence 8533355554333334789999999999999999999999999997643
No 16
>3d0s_A Transcriptional regulatory protein; CAMP receptor protein (CRP), dimer, inactive(APO, unliganded allostery, DNA binding, cyclic AMP; 2.00A {Mycobacterium tuberculosis} PDB: 3i54_A* 3i59_A* 3mzh_A* 3h3u_A* 3r6s_A*
Probab=99.66 E-value=6e-16 Score=155.99 Aligned_cols=130 Identities=21% Similarity=0.362 Sum_probs=116.2
Q ss_pred HHHhccCcCCCCCcHHHHHHHHhhceeEEecCCcEEEccCCCcceEEEEEeeEEEEEEec-CCeeeeeeeeecCCCCeec
Q 005042 471 LNLVRRVPLFANMDERLLDAICERLKPSLCTEGTCVVREGDPVVEMLLIIRGSLESVTTD-GGRTGFYNRGMLKEGDFCG 549 (717)
Q Consensus 471 ~~lL~~iplF~~ls~~~l~~l~~~l~~~~~~~ge~Ii~eGd~~~~myfI~~G~v~v~~~~-~g~e~~~~~~~l~~Gd~fG 549 (717)
.++++++|+|.+++++.++.++..++.+.|++|++|+++||+++.+|||.+|.|+++..+ +|++.+ +..+++|++||
T Consensus 5 ~~~l~~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~i~~~G~~~~~~y~i~~G~v~~~~~~~~g~~~~--~~~~~~G~~~G 82 (227)
T 3d0s_A 5 DEILARAGIFQGVEPSAIAALTKQLQPVDFPRGHTVFAEGEPGDRLYIIISGKVKIGRRAPDGRENL--LTIMGPSDMFG 82 (227)
T ss_dssp HHHHTTSSTTSSCCSSTTHHHHTTSCEEEECTTCEEECTTCCCCEEEEEEESCEEEEEECTTSCEEE--EEEECTTCEES
T ss_pred HHHHhcChhhcCCCHHHHHHHHhhCeEEEeCCCCEEEcCCCcCCEEEEEEeeEEEEEEECCCCcEEE--EEEecCCCEEe
Confidence 467899999999999999999999999999999999999999999999999999998754 577766 89999999999
Q ss_pred HHhHhhhcCCCCCCCCCCcccEEEEcceeEEEEEcHHHHHHHHHhcHHHHHHHHHHHHHhhh
Q 005042 550 EELLTWALDPKSVTNLPLSTRTVRALDEVEAFSLRAEELKFVASQFRRLHSRQVQHTFRFYS 611 (717)
Q Consensus 550 e~~l~~~l~~~~~~n~p~s~~tv~A~t~~el~~L~~~df~~ll~~~P~l~~k~l~~~~r~~s 611 (717)
+.++ +.+.+ +.++++|+++|+++.|++++|.+++.++|++....++...+.+.
T Consensus 83 ~~~~---~~~~~------~~~~~~A~~~~~v~~i~~~~~~~l~~~~p~~~~~~~~~l~~~l~ 135 (227)
T 3d0s_A 83 ELSI---FDPGP------RTSSATTITEVRAVSMDRDALRSWIADRPEISEQLLRVLARRLR 135 (227)
T ss_dssp CHHH---HSCSC------CSSEEEESSCEEEEEEEHHHHHHTTSSCHHHHHHHHHHHHHHHH
T ss_pred eHHH---cCCCC------ceeEEEEcccEEEEEEeHHHHHHHHHHChHHHHHHHHHHHHHHH
Confidence 9988 55555 88999999999999999999999999999988777776655443
No 17
>3dv8_A Transcriptional regulator, CRP/FNR family; cyclic nucleotide-binding domain, structural genomics, joint for structural genomics; 2.55A {Eubacterium rectale atcc 33656}
Probab=99.66 E-value=1.3e-15 Score=152.53 Aligned_cols=128 Identities=16% Similarity=0.172 Sum_probs=113.1
Q ss_pred HHhccCcCCCCCcHHHHHHHHhhceeEEecCCcEEEccCCCcceEEEEEeeEEEEEEe-cCCeeeeeeeeecCCCCe--e
Q 005042 472 NLVRRVPLFANMDERLLDAICERLKPSLCTEGTCVVREGDPVVEMLLIIRGSLESVTT-DGGRTGFYNRGMLKEGDF--C 548 (717)
Q Consensus 472 ~lL~~iplF~~ls~~~l~~l~~~l~~~~~~~ge~Ii~eGd~~~~myfI~~G~v~v~~~-~~g~e~~~~~~~l~~Gd~--f 548 (717)
++++++|+|.+++++.++.++..++.+.|++|++|+++||+++.+|||.+|.|+++.. .+|++.+ +..+++|++ |
T Consensus 3 ~~l~~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~i~~~G~~~~~~y~i~~G~v~~~~~~~~G~~~~--~~~~~~G~~~~~ 80 (220)
T 3dv8_A 3 SFENYFPLWNDLNTAQKKLISDNLITQHVKKGTIIHNGNMDCTGLLLVKSGQLRTYILSDEGREIT--LYRLFDMDMCLL 80 (220)
T ss_dssp --CCSCGGGGTSCHHHHHHHHTTCEEEEECTTCEEEEGGGCCCEEEEEEESCEEEEEECTTSCEEE--EEEECTTCEESG
T ss_pred chHHhChhhhcCCHHHHHHHHhhCceEEeCCCCEEECCCCCcceEEEEEeceEEEEEECCCCCEEE--EEecCCCCeeeh
Confidence 5788999999999999999999999999999999999999999999999999999864 5577766 799999999 7
Q ss_pred cHHhHhhhcCCCCCCCCCCcccEEEEcceeEEEEEcHHHHHHHHHhcHHHHHHHHHHHHHhh
Q 005042 549 GEELLTWALDPKSVTNLPLSTRTVRALDEVEAFSLRAEELKFVASQFRRLHSRQVQHTFRFY 610 (717)
Q Consensus 549 Ge~~l~~~l~~~~~~n~p~s~~tv~A~t~~el~~L~~~df~~ll~~~P~l~~k~l~~~~r~~ 610 (717)
|+.++ +.+.| +..+++|+++|+++.|++++|.+++.++|++....++...+.+
T Consensus 81 g~~~~---~~~~~------~~~~~~a~~~~~~~~i~~~~~~~l~~~~p~~~~~~~~~l~~~l 133 (220)
T 3dv8_A 81 SASCI---MRSIQ------FEVTIEAEKDTDLWIIPAEIYKGIMKDSAPVANYTNELMATRF 133 (220)
T ss_dssp GGGGG---CTTCC------CCCEEEESSCEEEEEEEHHHHHHHHHHCHHHHHHHHHHHHHHH
T ss_pred hHHHH---hCCCC------CceEEEEeeeeEEEEEEHHHHHHHHHHCHHHHHHHHHHHHHHH
Confidence 88887 66666 8899999999999999999999999999998777666655543
No 18
>2z69_A DNR protein; beta barrel, dimerization helix, transcription regulator; 2.10A {Pseudomonas aeruginosa}
Probab=99.66 E-value=1.4e-15 Score=143.10 Aligned_cols=128 Identities=15% Similarity=0.190 Sum_probs=108.9
Q ss_pred HHHhccCcCCCCCcHHHHHHHHhhceeEEecCCcEEEccCCCcceEEEEEeeEEEEEEec-CCeeeeeeeeecCCCCeec
Q 005042 471 LNLVRRVPLFANMDERLLDAICERLKPSLCTEGTCVVREGDPVVEMLLIIRGSLESVTTD-GGRTGFYNRGMLKEGDFCG 549 (717)
Q Consensus 471 ~~lL~~iplF~~ls~~~l~~l~~~l~~~~~~~ge~Ii~eGd~~~~myfI~~G~v~v~~~~-~g~e~~~~~~~l~~Gd~fG 549 (717)
.++++++|+|..++++.++.++..++.+.|++|++|+++|++++.+|||.+|.|+++..+ +|++.+ +..+++|++||
T Consensus 11 ~~~l~~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~i~~~g~~~~~~y~i~~G~v~~~~~~~~g~~~~--~~~~~~G~~~G 88 (154)
T 2z69_A 11 QQLLQSHHLFEPLSPVQLQELLASSDLVNLDKGAYVFRQGEPAHAFYYLISGCVKIYRLTPEGQEKI--LEVTNERNTFA 88 (154)
T ss_dssp HHHHTTSTTTTTSCHHHHHHHHHTCEEEEECTTCEEECTTSBCCEEEEEEESCEEEECCCC-----C--CEEECTTEEES
T ss_pred HHHhhcChhhcCCCHHHHHHHHhhCcEEEecCCCEEecCCCccceEEEEEeCEEEEEEECCCCCEEE--EEEccCCCeec
Confidence 567999999999999999999999999999999999999999999999999999998643 466665 79999999999
Q ss_pred HHhHhhhcCCCCCCCCCCcccEEEEcceeEEEEEcHHHHHHHHHhcHHHHHHHHHHHHH
Q 005042 550 EELLTWALDPKSVTNLPLSTRTVRALDEVEAFSLRAEELKFVASQFRRLHSRQVQHTFR 608 (717)
Q Consensus 550 e~~l~~~l~~~~~~n~p~s~~tv~A~t~~el~~L~~~df~~ll~~~P~l~~k~l~~~~r 608 (717)
+.++ +.+. |++..+++|.++|+++.|++++|.++++++|++....++...+
T Consensus 89 ~~~~---~~~~-----~~~~~~~~a~~~~~~~~i~~~~~~~l~~~~p~~~~~l~~~~~~ 139 (154)
T 2z69_A 89 EAMM---FMDT-----PNYVATAQAVVPSQLFRFSNKAYLRQLQDNTPLALALLAKLST 139 (154)
T ss_dssp GGGG---GSSC-----SBCSSEEEESSSEEEEEEEHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred cHhh---ccCC-----CCCceEEEEccceEEEEECHHHHHHHHHHChHHHHHHHHHHHH
Confidence 9987 4332 2267899999999999999999999999999876666655443
No 19
>3fx3_A Cyclic nucleotide-binding protein; helix_TURN_helix, CAMP regulatory protein, structural genomi 2, protein structure initiative; 2.20A {Ruegeria pomeroyi} PDB: 3h3z_A*
Probab=99.64 E-value=7.6e-16 Score=156.30 Aligned_cols=129 Identities=13% Similarity=0.181 Sum_probs=115.5
Q ss_pred HHHHhccCcCCCCCcHHHHHHHHhhceeEEecCCcEEEccCCCcceEEEEEeeEEEEEEe-cCCeeeeeeeeecCCCCee
Q 005042 470 CLNLVRRVPLFANMDERLLDAICERLKPSLCTEGTCVVREGDPVVEMLLIIRGSLESVTT-DGGRTGFYNRGMLKEGDFC 548 (717)
Q Consensus 470 ~~~lL~~iplF~~ls~~~l~~l~~~l~~~~~~~ge~Ii~eGd~~~~myfI~~G~v~v~~~-~~g~e~~~~~~~l~~Gd~f 548 (717)
..++++++|+|.+++++.++.++..++.+.|++|++|+++|++++.+|||.+|.|+++.. .+|++.+ +..+++|++|
T Consensus 9 ~~~~l~~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~i~~~G~~~~~~y~i~~G~v~~~~~~~~G~~~~--~~~~~~G~~~ 86 (237)
T 3fx3_A 9 QKAIARNSLLIRSLPEQHVDALLSQAVWRSYDRGETLFLQEEKAQAIHVVIDGWVKLFRMTPTGSEAV--VSVFTRGESF 86 (237)
T ss_dssp HHHHHTTSHHHHTSCHHHHHHHHTTCEEEEECTTCEEECTTSCCCEEEEEEESEEEEEEECTTSCEEE--EEEEETTEEE
T ss_pred HHHHHhCCHhhccCCHHHHHHHHhhCEEEEECCCCEEEcCCCccceEEEEEeeEEEEEEECCCCCEEE--EEEeCCCCEe
Confidence 467899999999999999999999999999999999999999999999999999999874 5677766 8999999999
Q ss_pred cHHhHhhhcCCCCCCCCCCcccEEEEcceeEEEEEcHHHHHHHHHhcHHHHHHHHHHHHHh
Q 005042 549 GEELLTWALDPKSVTNLPLSTRTVRALDEVEAFSLRAEELKFVASQFRRLHSRQVQHTFRF 609 (717)
Q Consensus 549 Ge~~l~~~l~~~~~~n~p~s~~tv~A~t~~el~~L~~~df~~ll~~~P~l~~k~l~~~~r~ 609 (717)
|+.++ +.+.+ +..+++|+++|+++.|++++|.+++.++|++....++...+.
T Consensus 87 G~~~~---~~~~~------~~~~~~a~~~~~v~~i~~~~~~~l~~~~p~~~~~~~~~l~~~ 138 (237)
T 3fx3_A 87 GEAVA---LRNTP------YPVSAEAVTPCEVMHIPSPVFVSLMRRDPEICISILATTFGH 138 (237)
T ss_dssp CHHHH---HHTCC------CSSEEEESSSEEEEEEEHHHHHHHHHHCHHHHHHHHHHHHHH
T ss_pred chHHH---hcCCC------CCceEEECCceEEEEEcHHHHHHHHHHCHHHHHHHHHHHHHH
Confidence 99987 44555 889999999999999999999999999999877666665543
No 20
>1vp6_A CNBD, cyclic-nucleotide binding domain of mesorhizobium LOTI CNG potassium channel; dimer helical bundle beta barrel core with cyclic AMP bound; HET: CMP; 1.70A {Mesorhizobium loti} SCOP: b.82.3.2 PDB: 3cl1_A* 2k0g_A* 2kxl_A 3clp_A* 1u12_A 3co2_A
Probab=99.64 E-value=1.5e-15 Score=140.43 Aligned_cols=124 Identities=24% Similarity=0.382 Sum_probs=109.8
Q ss_pred HHHHhccCcCCCCCcHHHHHHHHhhceeEEecCCcEEEccCCCcceEEEEEeeEEEEEEecCCeeeeeeeeecCCCCeec
Q 005042 470 CLNLVRRVPLFANMDERLLDAICERLKPSLCTEGTCVVREGDPVVEMLLIIRGSLESVTTDGGRTGFYNRGMLKEGDFCG 549 (717)
Q Consensus 470 ~~~lL~~iplF~~ls~~~l~~l~~~l~~~~~~~ge~Ii~eGd~~~~myfI~~G~v~v~~~~~g~e~~~~~~~l~~Gd~fG 549 (717)
..++++++|+|.+++++.++.++..++.+.|++|++|+++|++++.+|||.+|.|+++..+ + ..+++|++||
T Consensus 9 ~~~~l~~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~i~~~g~~~~~~y~i~~G~v~~~~~~---~-----~~~~~G~~~G 80 (138)
T 1vp6_A 9 NWQLVAAVPLFQKLGPAVLVEIVRALRARTVPAGAVICRIGEPGDRMFFVVEGSVSVATPN---P-----VELGPGAFFG 80 (138)
T ss_dssp HHHHHTTCGGGGGCCHHHHHHHHHHCEEEEECTTCEEECTTSCCCEEEEEEESCEEECSSS---C-----EEECTTCEEC
T ss_pred HHHHHHhChhhhcCCHHHHHHHHHhhcEEEeCCCCEEEeCCCCcceEEEEEeeEEEEEeCC---c-----ceECCCCEee
Confidence 3578999999999999999999999999999999999999999999999999999988654 1 3689999999
Q ss_pred HHhHhhhcCCCCCCCCCCcccEEEEcceeEEEEEcHHHHHHHHHhcHHHHHHHHHHHHHhh
Q 005042 550 EELLTWALDPKSVTNLPLSTRTVRALDEVEAFSLRAEELKFVASQFRRLHSRQVQHTFRFY 610 (717)
Q Consensus 550 e~~l~~~l~~~~~~n~p~s~~tv~A~t~~el~~L~~~df~~ll~~~P~l~~k~l~~~~r~~ 610 (717)
+.++ +.+.+ +..+++|.++|+++.|++++|.+++.++|++....++...+.+
T Consensus 81 ~~~~---~~~~~------~~~~~~a~~~~~~~~i~~~~~~~l~~~~p~~~~~~~~~~~~r~ 132 (138)
T 1vp6_A 81 EMAL---ISGEP------RSATVSAATTVSLLSLHSADFQMLCSSSPEIAEIFRKTALERR 132 (138)
T ss_dssp HHHH---HHCCC------CSSCEEESSSEEEEEEEHHHHHHHHHHCHHHHHHHHHHHHHHC
T ss_pred ehHh---ccCCC------ceeEEEECCCEEEEEECHHHHHHHHHHCHHHHHHHHHHHHHhh
Confidence 9987 45555 7899999999999999999999999999998777666655543
No 21
>3e97_A Transcriptional regulator, CRP/FNR family; YP_604437.1, structural genomics, joint center for structural genomics, JCSG; HET: MSE; 1.86A {Deinococcus geothermalis dsm 11300}
Probab=99.64 E-value=2.4e-15 Score=151.98 Aligned_cols=130 Identities=21% Similarity=0.284 Sum_probs=115.9
Q ss_pred HHHhccCcCCCCCcHHHHHHHHhhceeEEecCCcEEEccCCCcceEEEEEeeEEEEEEe-cCCeeeeeeeeecCCCCeec
Q 005042 471 LNLVRRVPLFANMDERLLDAICERLKPSLCTEGTCVVREGDPVVEMLLIIRGSLESVTT-DGGRTGFYNRGMLKEGDFCG 549 (717)
Q Consensus 471 ~~lL~~iplF~~ls~~~l~~l~~~l~~~~~~~ge~Ii~eGd~~~~myfI~~G~v~v~~~-~~g~e~~~~~~~l~~Gd~fG 549 (717)
.++++++|+|.+++++.++.++..++.+.|++|++|+++|++++.+|||.+|.|+++.. .+|++.+ +..+++|++||
T Consensus 5 ~~~L~~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~i~~~G~~~~~~y~i~~G~v~~~~~~~~g~~~~--~~~~~~g~~~G 82 (231)
T 3e97_A 5 LDDLKRSPLFQNVPEDAMREALKVVTERNFQPDELVVEQDAEGEALHLVTTGVVRVSRVSLGGRERV--LGDIYAPGVVG 82 (231)
T ss_dssp HHHHHTSGGGTTCCHHHHHHHHHTEEEEEECTTCBCCCTTCTTTCEEEECSSEEEEEEECC--CEEE--EEEEESSEEES
T ss_pred HHHHhcChhhccCCHHHHHHHHHhcEEEEECCCCEEEeCCCCCCeEEEEEecEEEEEEECCCCceEE--EEecCCCCEEe
Confidence 46789999999999999999999999999999999999999999999999999999875 4677766 89999999999
Q ss_pred HHhHhhhcCCCCCCCCCCcccEEEEcceeEEEEEcHHHHHHHHHhcHHHHHHHHHHHHHhhh
Q 005042 550 EELLTWALDPKSVTNLPLSTRTVRALDEVEAFSLRAEELKFVASQFRRLHSRQVQHTFRFYS 611 (717)
Q Consensus 550 e~~l~~~l~~~~~~n~p~s~~tv~A~t~~el~~L~~~df~~ll~~~P~l~~k~l~~~~r~~s 611 (717)
+.++ +.+.+ +..+++|+++|+++.|++++|.+++.++|++....++...+.+.
T Consensus 83 ~~~~---~~~~~------~~~~~~a~~~~~v~~i~~~~~~~l~~~~p~~~~~~~~~l~~~l~ 135 (231)
T 3e97_A 83 ETAV---LAHQE------RSASVRALTPVRTLMLHREHFELILRRHPRVLWNLAEMLARRVT 135 (231)
T ss_dssp TTTT---TCCCC------CCEEEEESSCEEEEEECHHHHHHHHHHCHHHHHHHHHHHHHHHH
T ss_pred eHHH---hCCCC------ceEEEEECCcEEEEEEeHHHHHHHHHHCHHHHHHHHHHHHHHHH
Confidence 9987 55555 88999999999999999999999999999998887777666543
No 22
>3pna_A CAMP-dependent protein kinase type I-alpha regula subunit; beta-barrel, CAMP-binding, catalytic subunit, transferase; HET: CMP; 1.50A {Bos taurus} PDB: 3fhi_B* 3iia_A 3plq_A* 1u7e_B* 3pvb_B*
Probab=99.63 E-value=2.2e-15 Score=142.71 Aligned_cols=118 Identities=17% Similarity=0.243 Sum_probs=105.6
Q ss_pred HHHHHHhccCcCCCCCcHHHHHHHHhhceeEEecCCcEEEccCCCcceEEEEEeeEEEEEEecCCeeeeeeeeecCCCCe
Q 005042 468 HLCLNLVRRVPLFANMDERLLDAICERLKPSLCTEGTCVVREGDPVVEMLLIIRGSLESVTTDGGRTGFYNRGMLKEGDF 547 (717)
Q Consensus 468 ~l~~~lL~~iplF~~ls~~~l~~l~~~l~~~~~~~ge~Ii~eGd~~~~myfI~~G~v~v~~~~~g~e~~~~~~~l~~Gd~ 547 (717)
.....+++++|+|.+++++.++.++..++.+.|++|++|+++|++++.+|||.+|.|+++. +|+. +..+++|++
T Consensus 34 ~~~~~~l~~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~i~~~G~~~~~~y~i~~G~v~~~~--~~~~----~~~~~~G~~ 107 (154)
T 3pna_A 34 AALAKAIEKNVLFSHLDDNERSDIFDAMFPVSFIAGETVIQQGDEGDNFYVIDQGEMDVYV--NNEW----ATSVGEGGS 107 (154)
T ss_dssp HHHHHHHHHCGGGTTCCHHHHHHHHHHCEEEEECTTCEEECTTSCCCEEEEEEESCEEEEE--TTEE----EEEECTTCE
T ss_pred HHHHHHHHhChhhhhCCHHHHHHHHHhceEEEECCCCEEEeCCCCCCeEEEEEecEEEEEE--CCEE----EEEecCCCE
Confidence 4457789999999999999999999999999999999999999999999999999999987 3432 678999999
Q ss_pred ecHHhHhhhcCCCCCCCCCCcccEEEEcceeEEEEEcHHHHHHHHHhcHHHHH
Q 005042 548 CGEELLTWALDPKSVTNLPLSTRTVRALDEVEAFSLRAEELKFVASQFRRLHS 600 (717)
Q Consensus 548 fGe~~l~~~l~~~~~~n~p~s~~tv~A~t~~el~~L~~~df~~ll~~~P~l~~ 600 (717)
||+.++ +.+.+ +.++++|+++|+++.|++++|.+++.++|.++.
T Consensus 108 fGe~~~---~~~~~------~~~~v~A~~~~~~~~i~~~~~~~ll~~~~~~~~ 151 (154)
T 3pna_A 108 FGELAL---IYGTP------RAATVKAKTNVKLWGIDRDSYRRILMGSTLRKR 151 (154)
T ss_dssp ECCHHH---HHCCC------CSSEEEESSCEEEEEEEHHHHHHHTHHHHHHC-
T ss_pred eeehHh---hcCCC------cceEEEECcceEEEEEeHHHHHHHHHhChHHHh
Confidence 999988 44555 789999999999999999999999999996643
No 23
>3iwz_A CAP-like, catabolite activation-like protein; XCC, pathogenicity, CRP, CLP, C-DI-GMP receptor, quorum SENS binding, transcription; 2.30A {Xanthomonas campestris PV}
Probab=99.62 E-value=1.1e-14 Score=146.84 Aligned_cols=128 Identities=20% Similarity=0.220 Sum_probs=102.6
Q ss_pred HHHhccCcCCCCCcHHHHHHHHhhceeEEecCCcEEEccCCCcceEEEEEeeEEEEEE-ecCCeeeeeeeeecCCCCeec
Q 005042 471 LNLVRRVPLFANMDERLLDAICERLKPSLCTEGTCVVREGDPVVEMLLIIRGSLESVT-TDGGRTGFYNRGMLKEGDFCG 549 (717)
Q Consensus 471 ~~lL~~iplF~~ls~~~l~~l~~~l~~~~~~~ge~Ii~eGd~~~~myfI~~G~v~v~~-~~~g~e~~~~~~~l~~Gd~fG 549 (717)
...+++.++|.+++++.++.++..++.+.|++|+.|+++||+++.+|||.+|.|+++. ..+|++.+ +..+++|++||
T Consensus 10 ~~~lr~~~lf~~l~~~~~~~l~~~~~~~~~~~g~~i~~~g~~~~~~y~i~~G~v~~~~~~~~G~~~~--~~~~~~g~~~G 87 (230)
T 3iwz_A 10 TTTVRNATPSLTLDAGTIERFLAHSHRRRYPTRTDVFRPGDPAGTLYYVISGSVSIIAEEDDDRELV--LGYFGSGEFVG 87 (230)
T ss_dssp ------------CCHHHHHHHHTTSEEEEECTTCEEECTTSBCCEEEEEEESCEEEEEECTTSCEEE--EEEECTTCEES
T ss_pred hhhhhhcchhccCCHHHHHHHHHhCeEEEeCCCCEEECCCCCCCeEEEEEeeEEEEEEECCCCCEEE--EEEecCCCEEE
Confidence 4578899999999999999999999999999999999999999999999999999986 44677766 89999999999
Q ss_pred HHhHhhhcCCC-CCCCCCCcccEEEEcceeEEEEEcHHHHHHHHHhc-----HHHHHHHHHHHHHh
Q 005042 550 EELLTWALDPK-SVTNLPLSTRTVRALDEVEAFSLRAEELKFVASQF-----RRLHSRQVQHTFRF 609 (717)
Q Consensus 550 e~~l~~~l~~~-~~~n~p~s~~tv~A~t~~el~~L~~~df~~ll~~~-----P~l~~k~l~~~~r~ 609 (717)
+.++ +.+. + +..+++|.++|+++.|++++|.+++.++ |++....++...+.
T Consensus 88 ~~~~---~~~~~~------~~~~~~a~~~~~v~~i~~~~~~~l~~~~~~~~~p~~~~~~~~~l~~~ 144 (230)
T 3iwz_A 88 EMGL---FIESDT------REVILRTRTQCELAEISYERLQQLFQTSLSPDAPRILYAIGVQLSKR 144 (230)
T ss_dssp CGGG---TSCCSB------CCSEEEESSCEEEEEEEHHHHHHHHHTTTGGGHHHHHHHHHHHHHHH
T ss_pred ehhh---hcCCCC------ceeEEEEcCcEEEEEEeHHHHHHHHHHhcccCCcHHHHHHHHHHHHH
Confidence 9987 4432 3 7889999999999999999999999999 98876666655543
No 24
>2gau_A Transcriptional regulator, CRP/FNR family; structural genomics, porphyromona gingivalis, PSI, protein structure initiative; 1.90A {Porphyromonas gingivalis} SCOP: a.4.5.4 b.82.3.2
Probab=99.62 E-value=3.4e-15 Score=151.00 Aligned_cols=126 Identities=13% Similarity=0.247 Sum_probs=109.3
Q ss_pred ccCcCCCCCcHHHHHHHHhhceeEEecCCcEEEccCCCcceEEEEEeeEEEEEEe-cCCeeeeeeeeecCCCCeecHHhH
Q 005042 475 RRVPLFANMDERLLDAICERLKPSLCTEGTCVVREGDPVVEMLLIIRGSLESVTT-DGGRTGFYNRGMLKEGDFCGEELL 553 (717)
Q Consensus 475 ~~iplF~~ls~~~l~~l~~~l~~~~~~~ge~Ii~eGd~~~~myfI~~G~v~v~~~-~~g~e~~~~~~~l~~Gd~fGe~~l 553 (717)
..+|+|.+++++.++.++..++.+.|++|++|+++||+++.+|||.+|.|+++.. .+|++.+ +..+++|++||+.++
T Consensus 13 ~~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~i~~~g~~~~~~y~v~~G~v~~~~~~~~g~~~~--~~~~~~G~~~G~~~~ 90 (232)
T 2gau_A 13 LLRDVWSLLNEEERELLDKEIQPFPCKKASTVFSEGDIPNNLFYLYEGKIKILREGVYGRFHI--SRIVKPGQFFGMRPY 90 (232)
T ss_dssp GSHHHHTTCCHHHHHHHHHHCEEEEECTTCEEECTTCCCCEEEEEEESCEEEEC-----CCCE--EEEECTTCEESHHHH
T ss_pred cccHhhhcCCHHHHHHHHhhCeEEEECCCCEEEeCCCCCCeEEEEEeCEEEEEEECCCCCEEE--EEEeCCCCEeeeehh
Confidence 3578999999999999999999999999999999999999999999999999864 3566666 899999999999987
Q ss_pred hhhcCCCCCCCCCCcccEEEEcceeEEEEEcHHHHHHHHHhcHHHHHHHHHHHHHhhh
Q 005042 554 TWALDPKSVTNLPLSTRTVRALDEVEAFSLRAEELKFVASQFRRLHSRQVQHTFRFYS 611 (717)
Q Consensus 554 ~~~l~~~~~~n~p~s~~tv~A~t~~el~~L~~~df~~ll~~~P~l~~k~l~~~~r~~s 611 (717)
+.+.+ +..+++|+++|+++.|++++|.+++.++|++....++...+.+.
T Consensus 91 ---~~~~~------~~~~~~A~~~~~v~~i~~~~~~~l~~~~p~~~~~~~~~l~~~l~ 139 (232)
T 2gau_A 91 ---FAEET------CSSTAIAVENSKVLAIPVEAIEALLKGNTSFCRYFLKALAKELG 139 (232)
T ss_dssp ---HHTSC------CSSEEEESSCEEEEEEEHHHHHHHHHHCHHHHHHHHHHHHHHHH
T ss_pred ---hCCCC------cceEEEEecceEEEEEEHHHHHHHHHHCHHHHHHHHHHHHHHHH
Confidence 44555 78999999999999999999999999999988777776655443
No 25
>3shr_A CGMP-dependent protein kinase 1; cyclic nucleotide binding domains, cyclic nucleotide protein transferase, PKG; HET: CMP; 2.50A {Bos taurus}
Probab=99.61 E-value=4.3e-15 Score=156.37 Aligned_cols=142 Identities=15% Similarity=0.242 Sum_probs=124.4
Q ss_pred HHHHhCChhHHHHHHHHHHHHHhccCcCCCCCcHHHHHHHHhhceeEEecCCcEEEccCCCcceEEEEEeeEEEEEEecC
Q 005042 452 HLVQNLPKDLRRDIKRHLCLNLVRRVPLFANMDERLLDAICERLKPSLCTEGTCVVREGDPVVEMLLIIRGSLESVTTDG 531 (717)
Q Consensus 452 ~ll~~Lp~~Lr~~I~~~l~~~lL~~iplF~~ls~~~l~~l~~~l~~~~~~~ge~Ii~eGd~~~~myfI~~G~v~v~~~~~ 531 (717)
.-..++|+..|.+...++..++++++++|.+++++.++.++..++.+.|++|++|+++||+++.+|||.+|.|++.. +
T Consensus 19 ~~~~~~p~~~rs~~~~~~i~~~l~~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~i~~~G~~~~~~yiI~~G~v~v~~--~ 96 (299)
T 3shr_A 19 GSMQAFRKFTKSERSKDLIKEAILDNDFMKNLELSQIQEIVDCMYPVEYGKDSCIIKEGDVGSLVYVMEDGKVEVTK--E 96 (299)
T ss_dssp ---CCCCCCCCCHHHHHHHHHHHHTCTTTTTSCHHHHHHHHHHCEEEEECTTCEEECTTCBCCCEEEEEESCEEEEE--T
T ss_pred cccCCCCCcCCCHHHHHHHHHHHhhCHHHHcCCHHHHHHHHHhcCeEEECCCCEEEcCCCcCceEEEEEEEEEEEEE--C
Confidence 34457999999999999999999999999999999999999999999999999999999999999999999999854 3
Q ss_pred CeeeeeeeeecCCCCeecHHhHhhhcCCCCCCCCCCcccEEEEcceeEEEEEcHHHHHHHHHhcHHHHHHHHHHHHH
Q 005042 532 GRTGFYNRGMLKEGDFCGEELLTWALDPKSVTNLPLSTRTVRALDEVEAFSLRAEELKFVASQFRRLHSRQVQHTFR 608 (717)
Q Consensus 532 g~e~~~~~~~l~~Gd~fGe~~l~~~l~~~~~~n~p~s~~tv~A~t~~el~~L~~~df~~ll~~~P~l~~k~l~~~~r 608 (717)
|. . +..+.+|++|||.++ +.+.| ++++++|.++|+++.|++++|..++.++|......+....+
T Consensus 97 g~--~--~~~~~~G~~fGe~~l---l~~~~------~~~tv~a~~~~~l~~i~~~~~~~i~~~~~~~~~~~~~~~l~ 160 (299)
T 3shr_A 97 GV--K--LCTMGPGKVFGELAI---LYNCT------RTATVKTLVNVKLWAIDRQCFQTIMMRTGLIKHTEYMEFLK 160 (299)
T ss_dssp TE--E--EEEECTTCEESCSGG---GTTTB------CCSEEEESSCEEEEEECHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred CE--E--EEEeCCCCeeeHhHH---hcCCC------CCcEEEEcCCeEEEEEcHHHHHHHhhHhHHHHHHHHHHHHh
Confidence 33 2 789999999999988 55555 88999999999999999999999999999766555544443
No 26
>3dkw_A DNR protein; CRP-FNR, HTH, beta barrel, dimerization helix, homodimer, transcription regulator; 3.60A {Pseudomonas aeruginosa}
Probab=99.60 E-value=6.8e-15 Score=147.99 Aligned_cols=130 Identities=14% Similarity=0.158 Sum_probs=114.1
Q ss_pred HHHhccCcCCCCCcHHHHHHHHhhceeEEecCCcEEEccCCCcceEEEEEeeEEEEEEe-cCCeeeeeeeeecCCCCeec
Q 005042 471 LNLVRRVPLFANMDERLLDAICERLKPSLCTEGTCVVREGDPVVEMLLIIRGSLESVTT-DGGRTGFYNRGMLKEGDFCG 549 (717)
Q Consensus 471 ~~lL~~iplF~~ls~~~l~~l~~~l~~~~~~~ge~Ii~eGd~~~~myfI~~G~v~v~~~-~~g~e~~~~~~~l~~Gd~fG 549 (717)
.++++++|+|.+++++.++.++..++.+.|++|++|+++||+++.+|||.+|.|+++.. .+|++.+ +..+++|++||
T Consensus 8 ~~~l~~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~i~~~g~~~~~~y~i~~G~v~~~~~~~~G~~~~--~~~~~~g~~~G 85 (227)
T 3dkw_A 8 QQLLQSHHLFEPLSPVQLQELLASSDLVNLDKGAYVFRQGEPAHAFYYLISGCVKIYRLTPEGQEKI--LEVTNERNTFA 85 (227)
T ss_dssp HHHHTTSTTTSSSCHHHHHHHHTSCEEEECCTTEEEECTTSBCCEEEEEEESCEECCBCCGGGCCBC--CCEECTTEEES
T ss_pred HHHHhcChhhcCCCHHHHHHHHhhCEEEEECCCCEEEcCCCccceEEEEEeCEEEEEEECCCCCEEE--EEEcCCCCEee
Confidence 56889999999999999999999999999999999999999999999999999998864 4566666 79999999999
Q ss_pred HHhHhhhcCCCCCCCCCCcccEEEEcceeEEEEEcHHHHHHHHHhcHHHHHHHHHHHHHhh
Q 005042 550 EELLTWALDPKSVTNLPLSTRTVRALDEVEAFSLRAEELKFVASQFRRLHSRQVQHTFRFY 610 (717)
Q Consensus 550 e~~l~~~l~~~~~~n~p~s~~tv~A~t~~el~~L~~~df~~ll~~~P~l~~k~l~~~~r~~ 610 (717)
+.++ +.+.| .+..+++|.++|+++.|++++|.+++.++|++....++...+.+
T Consensus 86 ~~~~---~~~~~-----~~~~~~~a~~~~~v~~i~~~~~~~l~~~~p~~~~~~~~~l~~~l 138 (227)
T 3dkw_A 86 EAMM---FMDTP-----NYVATAQAVVPSQLFRFSNKAYLRQLQDNTPLALALLAKLSTRL 138 (227)
T ss_dssp CTTT---TTTCS-----BCSSCEEESSCCEEEEEESHHHHHHHSSCTHHHHHHHHHHHHHH
T ss_pred eHHh---cCCCC-----CCceEEEEcCcEEEEEEeHHHHHHHHHHCHHHHHHHHHHHHHHH
Confidence 9977 43332 26789999999999999999999999999998877766665544
No 27
>1zyb_A Transcription regulator, CRP family; NP_813211.1, structural genomics, joint center for structura genomics, JCSG; 2.15A {Bacteroides thetaiotaomicron} SCOP: a.4.5.4 b.82.3.2
Probab=99.60 E-value=3.9e-15 Score=150.94 Aligned_cols=129 Identities=12% Similarity=0.190 Sum_probs=112.7
Q ss_pred HHHHhccCcCCCCCcHHHHHHHHhh--ceeEEecCCcEEEccCCCcceEEEEEeeEEEEEE-ecCCeeeeeeeeecCCCC
Q 005042 470 CLNLVRRVPLFANMDERLLDAICER--LKPSLCTEGTCVVREGDPVVEMLLIIRGSLESVT-TDGGRTGFYNRGMLKEGD 546 (717)
Q Consensus 470 ~~~lL~~iplF~~ls~~~l~~l~~~--l~~~~~~~ge~Ii~eGd~~~~myfI~~G~v~v~~-~~~g~e~~~~~~~l~~Gd 546 (717)
....++++|+|.+++++.++.++.. ++.+.|++|++|+++||+++.+|||.+|.|+++. ..+|++.+ +..+++|+
T Consensus 16 ~~~~l~~~~lf~~l~~~~~~~l~~~~~~~~~~~~~ge~i~~~G~~~~~~y~i~~G~v~~~~~~~~G~~~~--l~~~~~G~ 93 (232)
T 1zyb_A 16 MFDTLLQLPLFQGLCHEDFTSILDKVKLHFIKHKAGETIIKSGNPCTQLCFLLKGEISIVTNAKENIYTV--IEQIEAPY 93 (232)
T ss_dssp HHTTGGGSGGGTTCCHHHHHHHHHTSCCEEEEECTTCEEECTTSBCCEEEEEEESEEEEEEECGGGSCEE--EEEEESSE
T ss_pred HHHHHhcCccccCCCHHHHHHHHhhCCcEEEEECCCCEEECCCCcccEEEEEEeeEEEEEEECCCCCEEE--EEEccCCC
Confidence 3567899999999999999999998 9999999999999999999999999999999986 44567766 89999999
Q ss_pred eecHHhHhhhcCCCCCCCCCCcccEEEEcceeEEEEEcHHHHHHHHHhcHHHHHHHHHHHHH
Q 005042 547 FCGEELLTWALDPKSVTNLPLSTRTVRALDEVEAFSLRAEELKFVASQFRRLHSRQVQHTFR 608 (717)
Q Consensus 547 ~fGe~~l~~~l~~~~~~n~p~s~~tv~A~t~~el~~L~~~df~~ll~~~P~l~~k~l~~~~r 608 (717)
+||+.++ +.+.+ .+.++++|+++|+++.|++++|.+++.++|++....++...+
T Consensus 94 ~fG~~~~---~~~~~-----~~~~~~~A~~~~~v~~i~~~~~~~l~~~~p~~~~~l~~~l~~ 147 (232)
T 1zyb_A 94 LIEPQSL---FGMNT-----NYASSYVAHTEVHTVCISKAFVLSDLFRYDIFRLNYMNIVSN 147 (232)
T ss_dssp EECGGGG---SSSCC-----BCSSEEEESSCEEEEEEEHHHHHHTGGGSHHHHHHHHHHHHH
T ss_pred eeeehHH---hCCCC-----CCceEEEEccceEEEEEEHHHHHHHhccCHHHHHHHHHHHHH
Confidence 9999987 44332 267899999999999999999999999999887666555444
No 28
>3ryp_A Catabolite gene activator; CAMP receptor protein (CRP), allostery, DNA binding cyclic A transcription regulator; HET: CMP; 1.60A {Escherichia coli} PDB: 2cgp_A* 3hif_A 1g6n_A* 3ryr_A* 1i5z_A* 1j59_A* 1lb2_A* 1run_A* 1zrc_A* 1zrd_A* 1zre_A* 1zrf_A* 2gzw_A* 2wc2_A 3iyd_G* 3n4m_A* 3qop_A* 3rdi_A* 3rou_A* 3rpq_A* ...
Probab=99.58 E-value=3.5e-14 Score=140.93 Aligned_cols=122 Identities=16% Similarity=0.218 Sum_probs=103.8
Q ss_pred cCCCCCcHHHHHHHHhhceeEEecCCcEEEccCCCcceEEEEEeeEEEEEEe-cCCeeeeeeeeecCCCCeecHHhHhhh
Q 005042 478 PLFANMDERLLDAICERLKPSLCTEGTCVVREGDPVVEMLLIIRGSLESVTT-DGGRTGFYNRGMLKEGDFCGEELLTWA 556 (717)
Q Consensus 478 plF~~ls~~~l~~l~~~l~~~~~~~ge~Ii~eGd~~~~myfI~~G~v~v~~~-~~g~e~~~~~~~l~~Gd~fGe~~l~~~ 556 (717)
++++.++++.++.++..++.+.|++|++|+++|++++.+|||.+|.|+++.. .+|++.+ +..+++|++||+.++
T Consensus 2 ~l~~~l~~~~l~~l~~~~~~~~~~~g~~i~~~g~~~~~~y~i~~G~v~~~~~~~~g~~~~--~~~~~~g~~~G~~~~--- 76 (210)
T 3ryp_A 2 VLGKPQTDPTLEWFLSHCHIHKYPSKSTLIHQGEKAETLYYIVKGSVAVLIKDEEGKEMI--LSYLNQGDFIGELGL--- 76 (210)
T ss_dssp -----CCCHHHHHHHTTSEEEEECTTCEEECTTSBCCEEEEEEESEEEEEEECTTCCEEE--EEEEETTCEESCTTT---
T ss_pred cCCCcCCHHHHHHHHHhcEEEEeCCCCEEECCCCCCCeEEEEEeCEEEEEEECCCCCEEE--EEEcCCCCEeeeHHH---
Confidence 4567799999999999999999999999999999999999999999999865 5677766 899999999999987
Q ss_pred cCCC-CCCCCCCcccEEEEcceeEEEEEcHHHHHHHHHhcHHHHHHHHHHHHHhh
Q 005042 557 LDPK-SVTNLPLSTRTVRALDEVEAFSLRAEELKFVASQFRRLHSRQVQHTFRFY 610 (717)
Q Consensus 557 l~~~-~~~n~p~s~~tv~A~t~~el~~L~~~df~~ll~~~P~l~~k~l~~~~r~~ 610 (717)
+.+. + +..+++|+++|+++.|++++|.+++.++|++....++...+.+
T Consensus 77 ~~~~~~------~~~~~~a~~~~~v~~i~~~~~~~l~~~~p~~~~~~~~~l~~~l 125 (210)
T 3ryp_A 77 FEEGQE------RSAWVRAKTACEVAEISYKKFRQLIQVNPDILMRLSAQMARRL 125 (210)
T ss_dssp TSTTCB------CSSEEEESSCEEEEEEEHHHHHHHHHHCTHHHHHHHHHHHHHH
T ss_pred hcCCCC------ceEEEEECCcEEEEEEcHHHHHHHHHHChHHHHHHHHHHHHHH
Confidence 4443 4 7899999999999999999999999999998777666655433
No 29
>4ava_A Lysine acetyltransferase; allosteric regulation, domain coupling; HET: ACO; 1.70A {Mycobacterium tuberculosis} PDB: 4avb_A* 4avc_A*
Probab=99.58 E-value=1.6e-14 Score=154.56 Aligned_cols=128 Identities=18% Similarity=0.285 Sum_probs=114.3
Q ss_pred HHHhccCcCCCCCcHHHHHHHHhhceeEEecCCcEEEccCCCcceEEEEEeeEEEEEEec-CCeeeeeeeeecCCCCeec
Q 005042 471 LNLVRRVPLFANMDERLLDAICERLKPSLCTEGTCVVREGDPVVEMLLIIRGSLESVTTD-GGRTGFYNRGMLKEGDFCG 549 (717)
Q Consensus 471 ~~lL~~iplF~~ls~~~l~~l~~~l~~~~~~~ge~Ii~eGd~~~~myfI~~G~v~v~~~~-~g~e~~~~~~~l~~Gd~fG 549 (717)
.++|+++|+|.++++++++.++..++.+.|++|++|+++||+++.+|||.+|.|+++..+ +|++ + +..+.+|++||
T Consensus 12 ~~~l~~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~i~~~G~~~~~~y~i~~G~v~~~~~~~~g~~-~--~~~~~~G~~fG 88 (333)
T 4ava_A 12 VEDLAGMDVFQGCPAEGLVSLAASVQPLRAAAGQVLLRQGEPAVSFLLISSGSAEVSHVGDDGVA-I--IARALPGMIVG 88 (333)
T ss_dssp HHHHTTSGGGTTCCHHHHHHHHHHCEEEEECTTCEEECTTSBCCCEEEEEECCEEEEEECTTCCE-E--EEEECTTCEES
T ss_pred HHHHhCCHhHhcCCHHHHHHHHhhCeEEEECCCCEEEeCCCcCCEEEEEEeeEEEEEEECCCCcE-E--EEEecCCCEee
Confidence 578899999999999999999999999999999999999999999999999999998754 4554 4 78999999999
Q ss_pred HHhHhhhcCCCCCCCCCCcccEEEEcceeEEEEEcHHHHHHHHHhcHHHHHHHHHHHHHhhh
Q 005042 550 EELLTWALDPKSVTNLPLSTRTVRALDEVEAFSLRAEELKFVASQFRRLHSRQVQHTFRFYS 611 (717)
Q Consensus 550 e~~l~~~l~~~~~~n~p~s~~tv~A~t~~el~~L~~~df~~ll~~~P~l~~k~l~~~~r~~s 611 (717)
|.++ +.+.+ ++.+++|+++|+++.|++++|.+++ ++|.+..+.++...+...
T Consensus 89 e~~l---~~~~~------~~~~v~A~~~~~~~~i~~~~~~~l~-~~p~~~~~~~~~~~~~~~ 140 (333)
T 4ava_A 89 EIAL---LRDSP------RSATVTTIEPLTGWTGGRGAFATMV-HIPGVGERLLRTARQRLA 140 (333)
T ss_dssp HHHH---HHTCB------CSSEEEESSCEEEEEECHHHHHHHH-HSTTHHHHHHHHHHHHHH
T ss_pred HHHh---cCCCC------ceEEEEEecCEEEEEEcHHHHHHHH-hChHHHHHHHHHHHHHHH
Confidence 9988 44555 8899999999999999999999999 999998887776665544
No 30
>2fmy_A COOA, carbon monoxide oxidation system transcription RE COOA-1; DNA transcription regulator, DNA binding protein; HET: HEM; 2.20A {Carboxydothermus hydrogenoformans} PDB: 2hkx_A*
Probab=99.57 E-value=6.4e-15 Score=147.79 Aligned_cols=122 Identities=7% Similarity=0.118 Sum_probs=110.1
Q ss_pred HHhccCcCCCCCcHHHHHHHHhhceeEEecCCcEEEccCCCcceEEEEEeeEEEEEEecCCeeeeeeeeecCCCCeecHH
Q 005042 472 NLVRRVPLFANMDERLLDAICERLKPSLCTEGTCVVREGDPVVEMLLIIRGSLESVTTDGGRTGFYNRGMLKEGDFCGEE 551 (717)
Q Consensus 472 ~lL~~iplF~~ls~~~l~~l~~~l~~~~~~~ge~Ii~eGd~~~~myfI~~G~v~v~~~~~g~e~~~~~~~l~~Gd~fGe~ 551 (717)
.+++++|+|.+++++.++.++..++.+.|++|++|+++||+++.+|||.+|.|+++...+|++.+ +..+++|++||+
T Consensus 4 ~~l~~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~i~~~g~~~~~~y~i~~G~v~~~~~~~G~~~~--~~~~~~G~~~G~- 80 (220)
T 2fmy_A 4 MRLTDTNLLEVLNSEEYSGVLKEFREQRYSKKAILYTPNTERNLVFLVKSGRVRVYLAYEDKEFT--LAILEAGDIFCT- 80 (220)
T ss_dssp TCSCSSCHHHHTTSGGGTTTGGGSEEEEECTTCEEECTTCSSCEEEEEEESEEEEEEECSSCEEE--EEEEETTCEEES-
T ss_pred hhhhcChhhhcCCHHHHHHHHHhhheeEeCCCCEEECCCCCCCeEEEEEecEEEEEECCCCCEEE--EEEcCCCCEeCC-
Confidence 46788999999999999999999999999999999999999999999999999997667788776 899999999998
Q ss_pred hHhhhcCCCCCCCCCCcccEEEEcceeEEEEEcHHHHHHHHHhcHHHHHHHHHHHHHhhh
Q 005042 552 LLTWALDPKSVTNLPLSTRTVRALDEVEAFSLRAEELKFVASQFRRLHSRQVQHTFRFYS 611 (717)
Q Consensus 552 ~l~~~l~~~~~~n~p~s~~tv~A~t~~el~~L~~~df~~ll~~~P~l~~k~l~~~~r~~s 611 (717)
+ +.++++|+++|+++.|++++|.+++.++|++....++...+.+.
T Consensus 81 ---------~------~~~~~~A~~~~~v~~i~~~~~~~l~~~~p~~~~~~~~~~~~~~~ 125 (220)
T 2fmy_A 81 ---------H------TRAFIQAMEDTTILYTDIRNFQNIVVEFPAFSLNMVKVLGDLLK 125 (220)
T ss_dssp ---------C------SSSEEEESSSEEEEEEEHHHHHHHHHHCTHHHHHHHHHHHHHHH
T ss_pred ---------c------cceEEEEcCcEEEEEEeHHHHHHHHHHCHHHHHHHHHHHHHHHH
Confidence 2 67899999999999999999999999999988777776655443
No 31
>2d93_A RAP guanine nucleotide exchange factor 6; CNMP_binding domain, PDZ domain containing guanine nucleotide exchange factor 2, PDZ-GEF2, RA-GEF-2; NMR {Homo sapiens}
Probab=99.56 E-value=1.7e-15 Score=139.87 Aligned_cols=124 Identities=17% Similarity=0.289 Sum_probs=106.1
Q ss_pred ChhHHHHHHHHHHHHHhccCcCCCCCcHHHHHHHHhhceeEEec-CCcEEEccCCCcceEEEEEeeEEEEEEecCCeeee
Q 005042 458 PKDLRRDIKRHLCLNLVRRVPLFANMDERLLDAICERLKPSLCT-EGTCVVREGDPVVEMLLIIRGSLESVTTDGGRTGF 536 (717)
Q Consensus 458 p~~Lr~~I~~~l~~~lL~~iplF~~ls~~~l~~l~~~l~~~~~~-~ge~Ii~eGd~~~~myfI~~G~v~v~~~~~g~e~~ 536 (717)
||+.|.+.......++++++++|..++++.++.++..++.+.|+ +|++|+++||+++.+|||.+|.|+++. .+|++
T Consensus 2 ~p~~r~~~~~~~~~~~l~~~~~f~~l~~~~~~~l~~~~~~~~~~~~g~~i~~~g~~~~~~y~i~~G~v~~~~-~~g~~-- 78 (134)
T 2d93_A 2 SSGSSGDDDIEQLLEFMHQLPAFANMTMSVRRELCSVMIFEVVEQAGAIILEDGQELDSWYVILNGTVEISH-PDGKV-- 78 (134)
T ss_dssp CCSCCSTTHHHHHHHHHHHSSTTTSSCHHHHHHHTTTEEEEEECSSSCEEECTTCEECEEEECCBSCEEEEC-SSSCE--
T ss_pred ChhhcCHHHHHHHHHHHhCCcchhhCCHHHHHHHHHhheEEEecCCCCEEEeCCCCCCeEEEEEeCEEEEEc-CCCcE--
Confidence 44555555555567789999999999999999999999999999 999999999999999999999999986 44443
Q ss_pred eeeeecCCCCeecHHhHhhhcCCCCCCCCCCcccEE-EEcceeEEEEEcHHHHHHHHHhcH
Q 005042 537 YNRGMLKEGDFCGEELLTWALDPKSVTNLPLSTRTV-RALDEVEAFSLRAEELKFVASQFR 596 (717)
Q Consensus 537 ~~~~~l~~Gd~fGe~~l~~~l~~~~~~n~p~s~~tv-~A~t~~el~~L~~~df~~ll~~~P 596 (717)
..+.+|++||+.++ +.+.+ +..++ +|.++|+++.|++++|.+++++++
T Consensus 79 ---~~l~~G~~fG~~~~---~~~~~------~~~~~~~a~~~~~~~~i~~~~~~~l~~~~~ 127 (134)
T 2d93_A 79 ---ENLFMGNSFGITPT---LDKQY------MHGIVRTKVDDCQFVCIAQQDYWRILNHVE 127 (134)
T ss_dssp ---EEECTTCEESCCSS---SCCEE------CCSEEEESSSSEEEEEEEHHHHHHHSSCCS
T ss_pred ---EEecCCCccChhHh---cCCCc------ceeEEEEEecceEEEEEeHHHHHHHHHHHH
Confidence 45789999999987 55554 67788 999999999999999999988765
No 32
>2oz6_A Virulence factor regulator; winged helix, helix-turn-helix, transcription factor, CAMP-B proteins, CAMP receptor protein; HET: CMP; 2.80A {Pseudomonas aeruginosa} SCOP: a.4.5.4 b.82.3.2
Probab=99.56 E-value=8.1e-14 Score=137.99 Aligned_cols=117 Identities=23% Similarity=0.298 Sum_probs=102.3
Q ss_pred CcHHHHHHHHhhceeEEecCCcEEEccCCCcceEEEEEeeEEEEEEe-cCCeeeeeeeeecCCCCeecHHhHhhhcCCC-
Q 005042 483 MDERLLDAICERLKPSLCTEGTCVVREGDPVVEMLLIIRGSLESVTT-DGGRTGFYNRGMLKEGDFCGEELLTWALDPK- 560 (717)
Q Consensus 483 ls~~~l~~l~~~l~~~~~~~ge~Ii~eGd~~~~myfI~~G~v~v~~~-~~g~e~~~~~~~l~~Gd~fGe~~l~~~l~~~- 560 (717)
|+++.++.++..++.+.|++|++|+++||+++.+|||.+|.|+++.. .+|++.+ +..+++|++||+.++ +.+.
T Consensus 1 l~~~~l~~l~~~~~~~~~~~g~~i~~~g~~~~~~y~i~~G~v~~~~~~~~G~~~~--~~~~~~g~~~G~~~~---~~~~~ 75 (207)
T 2oz6_A 1 MKLKHLDKLLAHCHRRRYTAKSTIIYAGDRCETLFFIIKGSVTILIEDDDGREMI--IGYLNSGDFFGELGL---FEKEG 75 (207)
T ss_dssp CCHHHHHHHHHSSEEEEECTTCEEECTTSBCCEEEEEEESEEEEEEECTTSCEEE--EEEEETTCEESCTTT---CC---
T ss_pred CCHHHHHHHHhhcceEEECCCCEEEcCCCCCCeEEEEEeCEEEEEEECCCCCEEE--EEEcCCCCCcccHHH---hcCCC
Confidence 68899999999999999999999999999999999999999999864 4577766 899999999999987 4444
Q ss_pred ---CCCCCCCcccEEEEcceeEEEEEcHHHHHHHHHhcHHHHHHHHHHHHHhh
Q 005042 561 ---SVTNLPLSTRTVRALDEVEAFSLRAEELKFVASQFRRLHSRQVQHTFRFY 610 (717)
Q Consensus 561 ---~~~n~p~s~~tv~A~t~~el~~L~~~df~~ll~~~P~l~~k~l~~~~r~~ 610 (717)
+ +..+++|+++|+++.|++++|.+++.++|++....++...+.+
T Consensus 76 ~~~~------~~~~~~A~~~~~v~~i~~~~~~~l~~~~p~~~~~~~~~l~~~~ 122 (207)
T 2oz6_A 76 SEQE------RSAWVRAKVECEVAEISYAKFRELSQQDSEILYTLGSQMADRL 122 (207)
T ss_dssp --CB------CCSEEEESSCEEEEEEEHHHHHHHHHHCHHHHHHHHHHHHHHH
T ss_pred CCCC------cceEEEECCcEEEEEECHHHHHHHHHHCHHHHHHHHHHHHHHH
Confidence 4 7899999999999999999999999999998777666655443
No 33
>3shr_A CGMP-dependent protein kinase 1; cyclic nucleotide binding domains, cyclic nucleotide protein transferase, PKG; HET: CMP; 2.50A {Bos taurus}
Probab=99.54 E-value=1.2e-14 Score=153.02 Aligned_cols=130 Identities=18% Similarity=0.366 Sum_probs=115.1
Q ss_pred HHHHHHhccCcCCCCCcHHHHHHHHhhceeEEecCCcEEEccCCCcceEEEEEeeEEEEEEec--CCeeeeeeeeecCCC
Q 005042 468 HLCLNLVRRVPLFANMDERLLDAICERLKPSLCTEGTCVVREGDPVVEMLLIIRGSLESVTTD--GGRTGFYNRGMLKEG 545 (717)
Q Consensus 468 ~l~~~lL~~iplF~~ls~~~l~~l~~~l~~~~~~~ge~Ii~eGd~~~~myfI~~G~v~v~~~~--~g~e~~~~~~~l~~G 545 (717)
.....+++++|+|..++++.+..++..++.+.|++|++|+++||+++.+|||.+|.|+++..+ +|++.+ +..+++|
T Consensus 153 ~~~~~~l~~~~~f~~l~~~~l~~l~~~~~~~~~~~g~~I~~~G~~~~~~yiI~~G~v~~~~~~~~~g~~~~--~~~l~~G 230 (299)
T 3shr_A 153 TEYMEFLKSVPTFQSLPEEILSKLADVLEETHYENGEYIIRQGARGDTFFIISKGKVNVTREDSPNEDPVF--LRTLGKG 230 (299)
T ss_dssp HHHHHHHTTSHHHHHSCHHHHHHHTTTCEEEEECTTCEEECTTCEECEEEEEEESEEEEEECCSSSCCCEE--EEEEETT
T ss_pred HHHHHHHhhCHHhhhCCHHHHHHHHHhccEEEECCCCEEEeCCCCCCEEEEEEeeEEEEEEecCCCCcceE--EEEcCCC
Confidence 345678889999999999999999999999999999999999999999999999999999765 566665 8999999
Q ss_pred CeecHHhHhhhcCCCCCCCCCCcccEEEEcceeEEEEEcHHHHHHHHHhcHHHHHHHHHHHHH
Q 005042 546 DFCGEELLTWALDPKSVTNLPLSTRTVRALDEVEAFSLRAEELKFVASQFRRLHSRQVQHTFR 608 (717)
Q Consensus 546 d~fGe~~l~~~l~~~~~~n~p~s~~tv~A~t~~el~~L~~~df~~ll~~~P~l~~k~l~~~~r 608 (717)
++|||.++ +.+.+ ++++++|.++|+++.|++++|.+++.++|++..+.++...+
T Consensus 231 ~~fGe~~l---l~~~~------~~~tv~a~~~~~l~~i~~~~f~~ll~~~p~~~~~~~~~l~~ 284 (299)
T 3shr_A 231 DWFGEKAL---QGEDV------RTANVIAAEAVTCLVIDRDSFKHLIGGLDDVSNKAYEDAEA 284 (299)
T ss_dssp CEECGGGG---SSSEE------CSSEEEESSSEEEEEEEHHHHHHHHTTCCCCCHHHHHHHHH
T ss_pred CEeChHHH---hCCCC------cceEEEECCCEEEEEEeHHHHHHHHccHHHHHHHHHHHHhh
Confidence 99999988 66655 88999999999999999999999999999876665555443
No 34
>1ft9_A Carbon monoxide oxidation system transcription regulator; heme sensor, catabolite gene activator protein; HET: HEM; 2.60A {Rhodospirillum rubrum} SCOP: a.4.5.4 b.82.3.1
Probab=99.53 E-value=1.8e-14 Score=144.86 Aligned_cols=120 Identities=12% Similarity=0.045 Sum_probs=107.0
Q ss_pred HhccCcCCCCCcHHHHHHHHhhceeEEecCCcEEEccCCCcceEEEEEeeEEEEEEecCCeeeeeeeeecCCCCeecHHh
Q 005042 473 LVRRVPLFANMDERLLDAICERLKPSLCTEGTCVVREGDPVVEMLLIIRGSLESVTTDGGRTGFYNRGMLKEGDFCGEEL 552 (717)
Q Consensus 473 lL~~iplF~~ls~~~l~~l~~~l~~~~~~~ge~Ii~eGd~~~~myfI~~G~v~v~~~~~g~e~~~~~~~l~~Gd~fGe~~ 552 (717)
+++++|+|.+++++.++.++..++.+.|++|++|+++|++++.+|||.+|.|+++...+|++.+ +..+++|++||
T Consensus 1 ~l~~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~i~~~g~~~~~~y~i~~G~v~~~~~~~G~~~~--~~~~~~G~~fG--- 75 (222)
T 1ft9_A 1 MPPRFNIANVLLSPDGETFFRGFRSKIHAKGSLVCTGEGDENGVFVVVDGRLRVYLVGEEREIS--LFYLTSGDMFC--- 75 (222)
T ss_dssp -CCCCCTHHHHTSTTTTTTTTTCEEEEECTTCEEECTTCCCCCEEEEEESEEEEEEEETTEEEE--EEEEETTCEEE---
T ss_pred CcccchhhhcCCHHHHHHHHhhCcEEEECCCCEEECCCCCCCeEEEEEecEEEEEECCCCCEEE--EEEcCCCCEec---
Confidence 3678999999999999999999999999999999999999999999999999998666788776 89999999999
Q ss_pred HhhhcCCCCCCCCCCcccEEEEcceeEEEEEcHHHHHHHHHhcHHHHHHHHHHHHHhh
Q 005042 553 LTWALDPKSVTNLPLSTRTVRALDEVEAFSLRAEELKFVASQFRRLHSRQVQHTFRFY 610 (717)
Q Consensus 553 l~~~l~~~~~~n~p~s~~tv~A~t~~el~~L~~~df~~ll~~~P~l~~k~l~~~~r~~ 610 (717)
.+ +.++++|+++|+++.|++++|.+++.++|++....++...+.+
T Consensus 76 -------~~------~~~~~~A~~~~~v~~i~~~~~~~l~~~~p~~~~~~~~~l~~~l 120 (222)
T 1ft9_A 76 -------MH------SGCLVEATERTEVRFADIRTFEQKLQTCPSMAWGLIAILGRAL 120 (222)
T ss_dssp -------SC------SSCEEEESSCEEEEEECHHHHHHHHHHCGGGHHHHHHHHHHHH
T ss_pred -------CC------CCEEEEEccceEEEEEeHHHHHHHHHHChHHHHHHHHHHHHHH
Confidence 22 7789999999999999999999999999988777666655543
No 35
>3kcc_A Catabolite gene activator; helix-turn-helix, CAMP, CAMP-binding, DNA-binding nucleotide-binding, transcription, transcription regulation; HET: CMP; 1.66A {Escherichia coli}
Probab=99.53 E-value=1.2e-13 Score=142.66 Aligned_cols=119 Identities=16% Similarity=0.232 Sum_probs=101.8
Q ss_pred CCCcHHHHHHHHhhceeEEecCCcEEEccCCCcceEEEEEeeEEEEEEe-cCCeeeeeeeeecCCCCeecHHhHhhhcCC
Q 005042 481 ANMDERLLDAICERLKPSLCTEGTCVVREGDPVVEMLLIIRGSLESVTT-DGGRTGFYNRGMLKEGDFCGEELLTWALDP 559 (717)
Q Consensus 481 ~~ls~~~l~~l~~~l~~~~~~~ge~Ii~eGd~~~~myfI~~G~v~v~~~-~~g~e~~~~~~~l~~Gd~fGe~~l~~~l~~ 559 (717)
..++++.++.++..++.+.|++|++|+++|++++.+|||.+|.|+++.. .+|++.+ +..+++|++||+.++ +.+
T Consensus 55 ~~l~~~~l~~l~~~~~~~~~~~ge~i~~~G~~~~~~y~I~~G~v~~~~~~~~G~e~~--~~~~~~G~~~Ge~~~---~~~ 129 (260)
T 3kcc_A 55 KPQTDPTLEWFLSHCHIHKYPSKSTLIHQGEKAETLYYIVKGSVAVLIKDEEGKEMI--LSYLNQGDFIGELGL---FEE 129 (260)
T ss_dssp ----CHHHHHHHTTSEEEEECTTCEEECTTCBCCEEEEEEECEEEEEEECTTCCEEE--EEEEETTCEESCTTT---TST
T ss_pred CCCCHHHHHHHHhhCEEEEECCCCEEECCCCcCCeEEEEEeCEEEEEEECCCCCEEE--EEEcCCCCEEeehHH---hCC
Confidence 4589999999999999999999999999999999999999999999875 5677766 899999999999987 444
Q ss_pred C-CCCCCCCcccEEEEcceeEEEEEcHHHHHHHHHhcHHHHHHHHHHHHHhh
Q 005042 560 K-SVTNLPLSTRTVRALDEVEAFSLRAEELKFVASQFRRLHSRQVQHTFRFY 610 (717)
Q Consensus 560 ~-~~~n~p~s~~tv~A~t~~el~~L~~~df~~ll~~~P~l~~k~l~~~~r~~ 610 (717)
. + +.++++|+++|+++.|++++|.+++.++|++....++...+.+
T Consensus 130 ~~~------~~~~~~A~~~~~l~~i~~~~~~~l~~~~p~l~~~l~~~l~~~l 175 (260)
T 3kcc_A 130 GQE------RSAWVRAKTACEVAEISYKKFRQLIQVNPDILMRLSAQMARRL 175 (260)
T ss_dssp TCB------CCSEEEESSCEEEEEEEHHHHHHHHHHCTHHHHHHHHHHHHHH
T ss_pred CCC------CceEEEECCCeEEEEEcHHHHHHHHHHCHHHHHHHHHHHHHHH
Confidence 4 4 7899999999999999999999999999998776666555433
No 36
>2qcs_B CAMP-dependent protein kinase type I-alpha regula subunit, CAMP-dependent protein kinase, alpha-catalytic SU; cyclic adenosine monophosphate; HET: SEP TPO ANP TAM; 2.20A {Bos taurus} PDB: 1rl3_A* 1rgs_A* 1ne6_A* 1ne4_A*
Probab=99.53 E-value=9.4e-14 Score=145.29 Aligned_cols=128 Identities=20% Similarity=0.307 Sum_probs=111.8
Q ss_pred HHHHHhccCcCCCCCcHHHHHHHHhhceeEEecCCcEEEccCCCcceEEEEEeeEEEEEEec--CCeeeeeeeeecCCCC
Q 005042 469 LCLNLVRRVPLFANMDERLLDAICERLKPSLCTEGTCVVREGDPVVEMLLIIRGSLESVTTD--GGRTGFYNRGMLKEGD 546 (717)
Q Consensus 469 l~~~lL~~iplF~~ls~~~l~~l~~~l~~~~~~~ge~Ii~eGd~~~~myfI~~G~v~v~~~~--~g~e~~~~~~~l~~Gd 546 (717)
+...++.++++|..++++.+..++..++.+.|++|+.|+++||+++.+|||.+|.|+++... ++++.. +..+++|+
T Consensus 154 ~~~~~l~~~~lf~~l~~~~~~~l~~~~~~~~~~~g~~i~~~g~~~~~~y~i~~G~v~~~~~~~~~~~~~~--~~~l~~G~ 231 (291)
T 2qcs_B 154 MYEEFLSKVSILESLDKWERLTVADALEPVQFEDGQKIVVQGEPGDEFFIILEGSAAVLQRRSENEEFVE--VGRLGPSD 231 (291)
T ss_dssp HHHHHHHTCGGGTTCCHHHHHHHHHHCEEEEECTTCEEECTTSCCCEEEEEEEEEEEEEEECSTTSCEEE--EEEECTTC
T ss_pred HHHHHHhhchHhhhCCHHHHHHHHhhcEEEEECCCCEEEeCCccCCEEEEEEeCEEEEEEecCCCCccEE--EEEeCCCC
Confidence 34567788999999999999999999999999999999999999999999999999998643 334444 79999999
Q ss_pred eecHHhHhhhcCCCCCCCCCCcccEEEEcceeEEEEEcHHHHHHHHHhcHHHHHHHHHHHH
Q 005042 547 FCGEELLTWALDPKSVTNLPLSTRTVRALDEVEAFSLRAEELKFVASQFRRLHSRQVQHTF 607 (717)
Q Consensus 547 ~fGe~~l~~~l~~~~~~n~p~s~~tv~A~t~~el~~L~~~df~~ll~~~P~l~~k~l~~~~ 607 (717)
+|||.++ +.+.+ ++++++|.++|+++.|++++|.+++.++|++..+.++...
T Consensus 232 ~fGe~~l---l~~~~------~~~tv~a~~~~~~~~i~~~~f~~~l~~~p~~~~~~~~~~~ 283 (291)
T 2qcs_B 232 YFGEIAL---LMNRP------KAATVVARGPLKCVKLDRPRFERVLGPCSDILKRNIQQYN 283 (291)
T ss_dssp EECSGGG---TCCCC------CSSEEEEEEEEEEEEEEHHHHHHHHCCHHHHHTTSHHHHH
T ss_pred EecHHHH---cCCCC------cceEEEECCcEEEEEEcHHHHHHHhccHHHHHHHHHHHHH
Confidence 9999988 66665 8999999999999999999999999999987666555543
No 37
>3of1_A CAMP-dependent protein kinase regulatory subunit; cyclic nucleotide binding domain, evolution, PKA signaling, transfer; HET: CMP; 2.21A {Saccharomyces cerevisiae}
Probab=99.52 E-value=5.3e-14 Score=142.92 Aligned_cols=124 Identities=14% Similarity=0.158 Sum_probs=108.8
Q ss_pred HHHHhccCcCCCCCcHHHHHHHHhhceeEEecCCcEEEccCCCcceEEEEEeeEEEEEEecCCeeeeeeeeecCCCCeec
Q 005042 470 CLNLVRRVPLFANMDERLLDAICERLKPSLCTEGTCVVREGDPVVEMLLIIRGSLESVTTDGGRTGFYNRGMLKEGDFCG 549 (717)
Q Consensus 470 ~~~lL~~iplF~~ls~~~l~~l~~~l~~~~~~~ge~Ii~eGd~~~~myfI~~G~v~v~~~~~g~e~~~~~~~l~~Gd~fG 549 (717)
..++++++|+|.+++++.++.++..++.+.|++|++|+++||+++.+|||.+|.|+++. +++. +..+++|++||
T Consensus 5 i~~~l~~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~i~~~G~~~~~~y~i~~G~v~v~~--~~~~----~~~~~~g~~fG 78 (246)
T 3of1_A 5 LEKSIRNNFLFNKLDSDSKRLVINCLEEKSVPKGATIIKQGDQGDYFYVVEKGTVDFYV--NDNK----VNSSGPGSSFG 78 (246)
T ss_dssp HHHHHHTCTTTTTSCHHHHHHHHTTCEEEEECTTCEEECTTCCCCEEEEEEECCEEEES--TTSC----CEEECTTCEEC
T ss_pred HHHHHhcCHhhHhCCHHHHHHHHHhhceEEECCCCEEEecCCCCCEEEEEEeeEEEEEE--CCEE----EEecCCCCeee
Confidence 36788999999999999999999999999999999999999999999999999999885 2332 68899999999
Q ss_pred HHhHhhhcCCCCCCCCCCcccEEEEcceeEEEEEcHHHHHHHHHhcHHHHHHHHHHHHH
Q 005042 550 EELLTWALDPKSVTNLPLSTRTVRALDEVEAFSLRAEELKFVASQFRRLHSRQVQHTFR 608 (717)
Q Consensus 550 e~~l~~~l~~~~~~n~p~s~~tv~A~t~~el~~L~~~df~~ll~~~P~l~~k~l~~~~r 608 (717)
|.++ +.+.| ++++++|.++|+++.|++++|..++.++|..+........+
T Consensus 79 e~~l---~~~~~------~~~tv~a~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~l~ 128 (246)
T 3of1_A 79 ELAL---MYNSP------RAATVVATSDCLLWALDRLTFRKILLGSSFKKRLMYDDLLK 128 (246)
T ss_dssp HHHH---HHTCC------CSSEEEESSCEEEEEEEHHHHHHTTTTTTSHHHHHSHHHHH
T ss_pred hhHH---hcCCC------CCcEEEECCCeEEEEEEhHHHHHHHHHhHHHHHHHHHHHHh
Confidence 9988 44555 88999999999999999999999999999766555444443
No 38
>3of1_A CAMP-dependent protein kinase regulatory subunit; cyclic nucleotide binding domain, evolution, PKA signaling, transfer; HET: CMP; 2.21A {Saccharomyces cerevisiae}
Probab=99.52 E-value=6e-14 Score=142.55 Aligned_cols=117 Identities=20% Similarity=0.319 Sum_probs=106.1
Q ss_pred HHHHHhccCcCCCCCcHHHHHHHHhhceeEEecCCcEEEccCCCcceEEEEEeeEEEEEEecCCeeeeeeeeecCCCCee
Q 005042 469 LCLNLVRRVPLFANMDERLLDAICERLKPSLCTEGTCVVREGDPVVEMLLIIRGSLESVTTDGGRTGFYNRGMLKEGDFC 548 (717)
Q Consensus 469 l~~~lL~~iplF~~ls~~~l~~l~~~l~~~~~~~ge~Ii~eGd~~~~myfI~~G~v~v~~~~~g~e~~~~~~~l~~Gd~f 548 (717)
+...+++++|+|..++++.+..++..++.+.|++|+.|+++||+++.+|||.+|.|+++..+++ . +..+++|++|
T Consensus 122 ~~~~~l~~~~~f~~l~~~~l~~l~~~~~~~~~~~g~~i~~~g~~~~~~y~I~~G~v~v~~~~~~---~--~~~l~~g~~f 196 (246)
T 3of1_A 122 MYDDLLKSMPVLKSLTTYDRAKLADALDTKIYQPGETIIREGDQGENFYLIEYGAVDVSKKGQG---V--INKLKDHDYF 196 (246)
T ss_dssp HSHHHHHHCGGGTTCCHHHHHHHHHTCEEEEECTTCEEECTTSBCCEEEEEEECEEEEEETTTE---E--EEEEETTCEE
T ss_pred HHHHHHhhChhhhcCCHHHHHHHHHhhheEEeCCCCEEEeCCCcCCEEEEEEecEEEEEEcCCc---e--EEEcCCCCcc
Confidence 4456788899999999999999999999999999999999999999999999999999876554 2 7899999999
Q ss_pred cHHhHhhhcCCCCCCCCCCcccEEEEcceeEEEEEcHHHHHHHHHhcHHHH
Q 005042 549 GEELLTWALDPKSVTNLPLSTRTVRALDEVEAFSLRAEELKFVASQFRRLH 599 (717)
Q Consensus 549 Ge~~l~~~l~~~~~~n~p~s~~tv~A~t~~el~~L~~~df~~ll~~~P~l~ 599 (717)
||.++ +.+.| ++++++|.++|+++.|++++|.+++..+|++.
T Consensus 197 Ge~~~---~~~~~------~~~~v~a~~~~~~~~i~~~~f~~ll~~~~~~~ 238 (246)
T 3of1_A 197 GEVAL---LNDLP------RQATVTATKRTKVATLGKSGFQRLLGPAVDVL 238 (246)
T ss_dssp CHHHH---HHTCB------CSSEEEESSCEEEEEEEHHHHHHHCTTHHHHH
T ss_pred cHHHH---hCCCC------cccEEEECCCEEEEEEeHHHHHHHhccHHHHH
Confidence 99988 44555 88999999999999999999999999999763
No 39
>2qcs_B CAMP-dependent protein kinase type I-alpha regula subunit, CAMP-dependent protein kinase, alpha-catalytic SU; cyclic adenosine monophosphate; HET: SEP TPO ANP TAM; 2.20A {Bos taurus} PDB: 1rl3_A* 1rgs_A* 1ne6_A* 1ne4_A*
Probab=99.51 E-value=1.3e-13 Score=144.11 Aligned_cols=129 Identities=16% Similarity=0.234 Sum_probs=114.8
Q ss_pred HHHHHHHHhccCcCCCCCcHHHHHHHHhhceeEEecCCcEEEccCCCcceEEEEEeeEEEEEEecCCeeeeeeeeecCCC
Q 005042 466 KRHLCLNLVRRVPLFANMDERLLDAICERLKPSLCTEGTCVVREGDPVVEMLLIIRGSLESVTTDGGRTGFYNRGMLKEG 545 (717)
Q Consensus 466 ~~~l~~~lL~~iplF~~ls~~~l~~l~~~l~~~~~~~ge~Ii~eGd~~~~myfI~~G~v~v~~~~~g~e~~~~~~~l~~G 545 (717)
..+...++++++|+|.+++++.++.++..++.+.|++|++|+++||+++.+|+|.+|.|+++. +|. . +..+.+|
T Consensus 33 ~~~~i~~~l~~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~i~~~G~~~~~~y~i~~G~v~~~~--~g~--~--~~~l~~G 106 (291)
T 2qcs_B 33 TMAALAKAIEKNVLFSHLDDNERSDIFDAMFPVSFIAGETVIQQGDEGDNFYVIDQGEMDVYV--NNE--W--ATSVGEG 106 (291)
T ss_dssp HHHHHHHHTTTCHHHHTSCHHHHHHHHHHCEEEEECTTCEEECTTSBCCEEEEEEECCEEEEE--TTE--E--EEEECTT
T ss_pred HHHHHHHHHhcChhhhhCCHHHHHHHHHhccEEEECCCCEEEeCCCCCceEEEEeeeEEEEEE--CCe--E--EEEcCCC
Confidence 345567899999999999999999999999999999999999999999999999999999987 333 2 7899999
Q ss_pred CeecHHhHhhhcCCCCCCCCCCcccEEEEcceeEEEEEcHHHHHHHHHhcHHHHHHHHHHHHHh
Q 005042 546 DFCGEELLTWALDPKSVTNLPLSTRTVRALDEVEAFSLRAEELKFVASQFRRLHSRQVQHTFRF 609 (717)
Q Consensus 546 d~fGe~~l~~~l~~~~~~n~p~s~~tv~A~t~~el~~L~~~df~~ll~~~P~l~~k~l~~~~r~ 609 (717)
++|||.++ +.+.+ +.++++|.++|+++.|++++|..++.++|.+..+.+....+.
T Consensus 107 ~~fGe~~l---~~~~~------~~~tv~a~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~l~~ 161 (291)
T 2qcs_B 107 GSFGELAL---IYGTP------RAATVKAKTNVKLWGIDRDSYRRILMGSTLRKRKMYEEFLSK 161 (291)
T ss_dssp CEECGGGG---TCCCB------CSSEEEESSCEEEEEEEHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred CccchHHH---hcCCC------CceEEEECCCEEEEEEEhHHHHHHHhhhHHHHHHHHHHHHhh
Confidence 99999988 55555 889999999999999999999999999999877777665553
No 40
>1o5l_A Transcriptional regulator, CRP family; TM1171, structural GE JCSG, PSI, protein structure initiative, joint center for S genomics; 2.30A {Thermotoga maritima} SCOP: b.82.3.2
Probab=99.50 E-value=8.9e-14 Score=139.01 Aligned_cols=121 Identities=15% Similarity=0.161 Sum_probs=98.8
Q ss_pred CcCCCCCcHHHHHHHHhhceeEEecCCcEEEccCCCcceEEEEEeeEEEEEEe-cCCeeeeeeeeecCCCCeecHHhHhh
Q 005042 477 VPLFANMDERLLDAICERLKPSLCTEGTCVVREGDPVVEMLLIIRGSLESVTT-DGGRTGFYNRGMLKEGDFCGEELLTW 555 (717)
Q Consensus 477 iplF~~ls~~~l~~l~~~l~~~~~~~ge~Ii~eGd~~~~myfI~~G~v~v~~~-~~g~e~~~~~~~l~~Gd~fGe~~l~~ 555 (717)
-|.|...+++..+.+...++.+.|++|++|+++|++++.+|||.+|.|+++.. .+|++.+ +..+++|++||+.++
T Consensus 4 ~~~~~~~~~~~~~~l~~~~~~~~~~~g~~i~~~G~~~~~~y~v~~G~v~~~~~~~~G~~~~--~~~~~~G~~~G~~~~-- 79 (213)
T 1o5l_A 4 DKIHHHHHHMDLKKLLPCGKVIVFRKGEIVKHQDDPIEDVLILLEGTLKTEHVSENGKTLE--IDEIKPVQIIASGFI-- 79 (213)
T ss_dssp ---------CCGGGGGGGSEEEEECTTCEEECTTCBCCEEEEEEESCEEEEEECTTSCEEE--EEEECSSEESSGGGT--
T ss_pred cccchhhccCCHHHHhcccEEEEECCCCEEEcCCCccceEEEEEeeEEEEEEECCCCCEEE--EEEecCCCEeeeHHH--
Confidence 36788888999999999999999999999999999999999999999999864 4677766 899999999999987
Q ss_pred hcCCC-CCCCCCCcccEEEEcceeEEEEEcHHHHHHHHHhcHHHHHHHHHHHHH
Q 005042 556 ALDPK-SVTNLPLSTRTVRALDEVEAFSLRAEELKFVASQFRRLHSRQVQHTFR 608 (717)
Q Consensus 556 ~l~~~-~~~n~p~s~~tv~A~t~~el~~L~~~df~~ll~~~P~l~~k~l~~~~r 608 (717)
+.+. + +..+++|+++|+++.|++++|.+++.++|++....++...+
T Consensus 80 -~~~~~~------~~~~~~A~~~~~v~~i~~~~~~~l~~~~p~~~~~l~~~l~~ 126 (213)
T 1o5l_A 80 -FSSEPR------FPVNVVAGENSKILSIPKEVFLDLLMKDRELLLFFLKDVSE 126 (213)
T ss_dssp -TSSSCB------CSSEEEESSSEEEEEEEHHHHHHHHHHCHHHHHHHHHHHHH
T ss_pred -hcCCCC------ceEEEEEccceEEEEEeHHHHHHHHHHCHHHHHHHHHHHHH
Confidence 4433 4 78999999999999999999999999999886666555443
No 41
>3tnp_B CAMP-dependent protein kinase type II-beta regula subunit; PKA RIIB tetrameric holoenzyme, transferase; HET: SEP TPO; 2.30A {Mus musculus} PDB: 3tnq_A* 1cx4_A* 2qvs_B*
Probab=99.50 E-value=9.6e-14 Score=153.57 Aligned_cols=130 Identities=18% Similarity=0.245 Sum_probs=116.5
Q ss_pred HHHHHHHHHHHHhccCcCCCCCcHHHHHHHHhhceeEEecCCcEEEccCCCcceEEEEEeeEEEEEEecCCeeeeeeeee
Q 005042 462 RRDIKRHLCLNLVRRVPLFANMDERLLDAICERLKPSLCTEGTCVVREGDPVVEMLLIIRGSLESVTTDGGRTGFYNRGM 541 (717)
Q Consensus 462 r~~I~~~l~~~lL~~iplF~~ls~~~l~~l~~~l~~~~~~~ge~Ii~eGd~~~~myfI~~G~v~v~~~~~g~e~~~~~~~ 541 (717)
|.+-..+...+.++++++|.+++++.+..|+..++.+.|++|++|+++||.++.+|||.+|.|+++...+|++.+ +..
T Consensus 135 ks~~~~~~i~~~L~~~~lF~~L~~~~l~~l~~~~~~~~~~~Ge~I~~qGd~~d~~YiI~sG~v~v~~~~~G~~~~--v~~ 212 (416)
T 3tnp_B 135 KTDDQRNRLQEACKDILLFKNLDPEQMSQVLDAMFEKLVKEGEHVIDQGDDGDNFYVIDRGTFDIYVKCDGVGRC--VGN 212 (416)
T ss_dssp CCHHHHHHHHHHHTTSHHHHTCCHHHHHHHHHHCEEEEECTTCEEECTTSCCCEEEEEEECEEEEEEECSSCEEE--EEE
T ss_pred CCHHHHHHHHHHHhCCHhHhcCCHHHHHHHHHhcEEEEeCCCCEEEeCCCCCceEEEEEeeEEEEEEecCCCEEE--EEE
Confidence 334455667889999999999999999999999999999999999999999999999999999999877777776 789
Q ss_pred cCCCCeecHHhHhhhcCCCCCCCCCCcccEEEEcceeEEEEEcHHHHHHHHHhcHHHHHHH
Q 005042 542 LKEGDFCGEELLTWALDPKSVTNLPLSTRTVRALDEVEAFSLRAEELKFVASQFRRLHSRQ 602 (717)
Q Consensus 542 l~~Gd~fGe~~l~~~l~~~~~~n~p~s~~tv~A~t~~el~~L~~~df~~ll~~~P~l~~k~ 602 (717)
+.+|++|||.++ +.+.| +.++++|.++|+++.|++++|..++.++|....+.
T Consensus 213 l~~G~~fGe~al---l~~~p------r~atv~A~~d~~l~~i~r~~f~~ll~~~~~~~~~~ 264 (416)
T 3tnp_B 213 YDNRGSFGELAL---MYNTP------KAATITATSPGALWGLDRVTFRRIIVKNNAKKRKM 264 (416)
T ss_dssp EESCCEECGGGG---TSCCC------CSSEEEESSSEEEEEEEHHHHHHHHHHHHHHHSSS
T ss_pred ecCCCEEeeHHH---hcCCC------cccEEEEccCeEEEEEeehhhhhhhhcchhHHHHH
Confidence 999999999988 55666 89999999999999999999999999999765443
No 42
>2a9h_A Voltage-gated potassium channel; potassium channel, KCSA, structure, membrane protein, metal transport; HET: PCA; NMR {Streptomyces lividans} SCOP: f.14.1.1
Probab=99.50 E-value=7e-14 Score=132.71 Aligned_cols=64 Identities=14% Similarity=0.268 Sum_probs=56.7
Q ss_pred HHHHHHHHHHHHhhccccCCCCccCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHH
Q 005042 346 SKLFYCLWFGLQNLSTLGQGLKTSTYIQEIIFSILIGIAGLVLLALLIGNMQTYLTSLTVRLEE 409 (717)
Q Consensus 346 ~~Y~~slywal~tlttvGygd~~~~~~~E~~f~i~i~i~G~~lfa~lIg~~~~~l~~~~~~~~e 409 (717)
..|..|+||++.|+|||||||++|.+..+++++++.+++|++++|+++|.+.+.+.+...+.++
T Consensus 83 ~s~~~a~y~s~vTltTVGYGDi~P~t~~gr~~~~~~~l~Gv~~~a~~~~~i~~~~~~~~~~~~~ 146 (155)
T 2a9h_A 83 ISYPDALWWSVETATTVGYGDLYPVTLWGRCVAVVVMVAGITSYGLVFAAVATWFVGREQERRG 146 (155)
T ss_dssp TSHHHHHHHHHHHHTTCCCSSSCCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCCC----
T ss_pred CcccceeheeeeeeecccCCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4578899999999999999999999999999999999999999999999999999877654433
No 43
>3vou_A ION transport 2 domain protein, voltage-gated SOD channel; 4-helical bundle, ION channel, membrane, transport protein; 3.20A {Bacillus weihenstephanensis}
Probab=99.49 E-value=3.2e-13 Score=127.62 Aligned_cols=86 Identities=21% Similarity=0.204 Sum_probs=70.3
Q ss_pred HHHHHHHHHHhhccccCCCCccCchhHHHHHHHHHHHHHHHHHHHHHHHHH------HHHH----hhHHHHHHHHHHHHH
Q 005042 348 LFYCLWFGLQNLSTLGQGLKTSTYIQEIIFSILIGIAGLVLLALLIGNMQT------YLTS----LTVRLEEMRIKRRDS 417 (717)
Q Consensus 348 Y~~slywal~tlttvGygd~~~~~~~E~~f~i~i~i~G~~lfa~lIg~~~~------~l~~----~~~~~~e~~~k~~~~ 417 (717)
|..|+||++.|+||+||||++|.+..+++++++.+++|+++++++++++.. +.+. .+....+.+.+++++
T Consensus 53 ~~~a~y~~~~t~tTvGyGd~~p~t~~~r~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~rl~~i 132 (148)
T 3vou_A 53 PLDALYFSVVTLTTVGDGNFSPQTDFGKVFTILYIFIGIGLVFGFIHKLAVNVQLPSILSNRKKETDAYRLEVMEKLEAI 132 (148)
T ss_dssp HHHHHHHHHHHHTTCCCSSCCCCSHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHccCCCCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 567899999999999999999999999999999999999999999999987 3333 244555667788999
Q ss_pred HHHHHhCCCCHHHHHH
Q 005042 418 EQWMHHRWLPQDLRER 433 (717)
Q Consensus 418 ~~~m~~~~lp~~L~~r 433 (717)
+++|+.++.|++|+.|
T Consensus 133 ~~~~~~~~~~~~L~~R 148 (148)
T 3vou_A 133 EKKLAEHSRQGSLVPR 148 (148)
T ss_dssp HHHHHHHTTC------
T ss_pred HHHHHhcCCCcCCCCC
Confidence 9999999999999876
No 44
>4din_B CAMP-dependent protein kinase type I-beta regulat subunit, CAMP-dependent protein kinase catalytic subunit A; isoform diversity; HET: TPO SEP ATP; 3.70A {Homo sapiens}
Probab=99.48 E-value=7.7e-14 Score=152.54 Aligned_cols=132 Identities=18% Similarity=0.290 Sum_probs=114.6
Q ss_pred HHHHHHhccCcCCCCCcHHHHHHHHhhceeEEecCCcEEEccCCCcceEEEEEeeEEEEEEec--CCeeeeeeeeecCCC
Q 005042 468 HLCLNLVRRVPLFANMDERLLDAICERLKPSLCTEGTCVVREGDPVVEMLLIIRGSLESVTTD--GGRTGFYNRGMLKEG 545 (717)
Q Consensus 468 ~l~~~lL~~iplF~~ls~~~l~~l~~~l~~~~~~~ge~Ii~eGd~~~~myfI~~G~v~v~~~~--~g~e~~~~~~~l~~G 545 (717)
.++..+++++++|..+++..+..++..++.+.|.+|++|+++|+.++.+|||.+|.|+++..+ ++++.. +..+++|
T Consensus 244 ~~~~~~L~~v~~f~~Ls~~el~~l~~~~~~~~~~~ge~I~~eGd~~~~~yiI~~G~v~v~~~~~~~~~~~~--v~~l~~G 321 (381)
T 4din_B 244 KMYEEFLSKVSILESLEKWERLTVADALEPVQFEDGEKIVVQGEPGDDFYIITEGTASVLQRRSPNEEYVE--VGRLGPS 321 (381)
T ss_dssp HHHHHHHHHCSTTTTCCTTHHHHHHTTCBCCCBCSSCBSSCTTSBCCEEEEEEESCEEEECCSSSSSCCCE--EEEECTT
T ss_pred HHHHHHhhhhHHHHhccHHHHHHHHHhhhhccCCCCCEEEeCCCcCCEEEEEEeCEEEEEEecCCCCceEE--EEEeCCC
Confidence 445678889999999999999999999999999999999999999999999999999999753 333333 7899999
Q ss_pred CeecHHhHhhhcCCCCCCCCCCcccEEEEcceeEEEEEcHHHHHHHHHhcHHHHHHHHHHHHHhh
Q 005042 546 DFCGEELLTWALDPKSVTNLPLSTRTVRALDEVEAFSLRAEELKFVASQFRRLHSRQVQHTFRFY 610 (717)
Q Consensus 546 d~fGe~~l~~~l~~~~~~n~p~s~~tv~A~t~~el~~L~~~df~~ll~~~P~l~~k~l~~~~r~~ 610 (717)
++|||.++ +.+.| ++++++|.++|+++.|++++|.+++..+|++..+.+++..++.
T Consensus 322 d~fGe~al---l~~~~------r~~tv~A~~~~~ll~i~~~~f~~ll~~~~~i~~~~~~~~~~~l 377 (381)
T 4din_B 322 DYFGEIAL---LLNRP------RAATVVARGPLKCVKLDRPRFERVLGPCSEILKRNIQRYNSFI 377 (381)
T ss_dssp CEECTTGG---GSCCB------CSSEEEESSCBEEEEEEHHHHHHHHCCHHHHHHTTHHHHHHHH
T ss_pred CEechHHH---hCCCC------ceeEEEEcCCEEEEEEeHHHHHHHHhhhHHHHHHHHHHHHHHH
Confidence 99999988 66666 8899999999999999999999999999988666665554443
No 45
>4din_B CAMP-dependent protein kinase type I-beta regulat subunit, CAMP-dependent protein kinase catalytic subunit A; isoform diversity; HET: TPO SEP ATP; 3.70A {Homo sapiens}
Probab=99.46 E-value=2.6e-13 Score=148.39 Aligned_cols=129 Identities=15% Similarity=0.228 Sum_probs=113.5
Q ss_pred HHHHHHHHHhccCcCCCCCcHHHHHHHHhhceeEEecCCcEEEccCCCcceEEEEEeeEEEEEEecCCeeeeeeeeecCC
Q 005042 465 IKRHLCLNLVRRVPLFANMDERLLDAICERLKPSLCTEGTCVVREGDPVVEMLLIIRGSLESVTTDGGRTGFYNRGMLKE 544 (717)
Q Consensus 465 I~~~l~~~lL~~iplF~~ls~~~l~~l~~~l~~~~~~~ge~Ii~eGd~~~~myfI~~G~v~v~~~~~g~e~~~~~~~l~~ 544 (717)
-..+...+.++++++|.+++++.+..++..++.+.|++|++|+++||+++.+|||.+|.|+++. +|+. +..+++
T Consensus 123 ~~~~~i~~~l~~~~lF~~L~~~~l~~l~~~~~~~~~~~ge~I~~~Gd~~~~~yiI~~G~v~v~~--~~~~----v~~l~~ 196 (381)
T 4din_B 123 KTMTALAKAISKNVLFAHLDDNERSDIFDAMFPVTHIAGETVIQQGNEGDNFYVVDQGEVDVYV--NGEW----VTNISE 196 (381)
T ss_dssp HHHHHHHHHHTTCTTSSSCCHHHHHHHHHHCEEEECCTTCBSSCTTSBCCEEEECSSSEEEEEE--TTEE----EEEEES
T ss_pred HHHHHHHHHHhCChhhhcCCHHHHHHHHHhceEEEECCCCEEEeCCCCCCeEEEEEeeEEEEEE--CCeE----eeeCCC
Confidence 3345567899999999999999999999999999999999999999999999999999999986 3332 678999
Q ss_pred CCeecHHhHhhhcCCCCCCCCCCcccEEEEcceeEEEEEcHHHHHHHHHhcHHHHHHHHHHHHH
Q 005042 545 GDFCGEELLTWALDPKSVTNLPLSTRTVRALDEVEAFSLRAEELKFVASQFRRLHSRQVQHTFR 608 (717)
Q Consensus 545 Gd~fGe~~l~~~l~~~~~~n~p~s~~tv~A~t~~el~~L~~~df~~ll~~~P~l~~k~l~~~~r 608 (717)
|++|||.++ +.+.| +.++++|.++|+++.|++++|..++.++|....+.+....+
T Consensus 197 G~~fGe~al---l~~~~------r~atv~A~~~~~l~~i~~~~f~~ll~~~~~~~~~~~~~~L~ 251 (381)
T 4din_B 197 GGSFGELAL---IYGTP------RAATVKAKTDLKLWGIDRDSYRRILMGSTLRKRKMYEEFLS 251 (381)
T ss_dssp SCCBCGGGG---TSCCB------CSSEEEESSSCEEEEEEHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCEEEchHH---hcCCC------cceEEEECCCEEEEEEchHHHHHhhhhhhHHHHHHHHHHhh
Confidence 999999988 55555 88999999999999999999999999999877666555444
No 46
>4h33_A LMO2059 protein; bilayers, KVLM, lipidic cubic phase (LCP), pore module, ION membrane protein; HET: OLC; 3.10A {Listeria monocytogenes} PDB: 4h37_A
Probab=99.45 E-value=1.2e-13 Score=128.75 Aligned_cols=92 Identities=10% Similarity=0.174 Sum_probs=55.2
Q ss_pred HHHHHHHHHHhhccccCCCCccCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhCCCC
Q 005042 348 LFYCLWFGLQNLSTLGQGLKTSTYIQEIIFSILIGIAGLVLLALLIGNMQTYLTSLTVRLEEMRIKRRDSEQWMHHRWLP 427 (717)
Q Consensus 348 Y~~slywal~tlttvGygd~~~~~~~E~~f~i~i~i~G~~lfa~lIg~~~~~l~~~~~~~~e~~~k~~~~~~~m~~~~lp 427 (717)
|..|+||++.|+|||||||++|.|..|++++++++++|++++|+++|.+++.++....+..+.+...+..+...+..+++
T Consensus 44 ~~~a~y~~~~T~tTvGyGDi~P~t~~gr~~~~~~~~~g~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 123 (137)
T 4h33_A 44 YPDALWWAIVTATTVGYGDIVPVTPIGRILASIMMLFGIAFIGMITSTITNFFRCKKPTNSSTQRANKITQLISETPDLT 123 (137)
T ss_dssp HHHHHHHHHHHHTTCCCSSSCCCSHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTTTTTC---------------------
T ss_pred HHHHHHHHHHHHHcccCCCCCCCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcc
Confidence 67799999999999999999999999999999999999999999999999998766554443333333333344455666
Q ss_pred HHHHHHHHHHHH
Q 005042 428 QDLRERVRRYDH 439 (717)
Q Consensus 428 ~~L~~rV~~y~~ 439 (717)
++....+++|.+
T Consensus 124 ~~~i~~l~~~l~ 135 (137)
T 4h33_A 124 KEEIAVVEQFLT 135 (137)
T ss_dssp ------------
T ss_pred HHHHHHHHHHHh
Confidence 666666776654
No 47
>3tnp_B CAMP-dependent protein kinase type II-beta regula subunit; PKA RIIB tetrameric holoenzyme, transferase; HET: SEP TPO; 2.30A {Mus musculus} PDB: 3tnq_A* 1cx4_A* 2qvs_B*
Probab=99.45 E-value=1.4e-13 Score=152.17 Aligned_cols=124 Identities=10% Similarity=0.255 Sum_probs=107.2
Q ss_pred HHHHHhccCcCCCCCcHHHHHHHHhhceeEEecCCcEEEccCCCcceEEEEEeeEEEEEEecC-------Ceeeeeeeee
Q 005042 469 LCLNLVRRVPLFANMDERLLDAICERLKPSLCTEGTCVVREGDPVVEMLLIIRGSLESVTTDG-------GRTGFYNRGM 541 (717)
Q Consensus 469 l~~~lL~~iplF~~ls~~~l~~l~~~l~~~~~~~ge~Ii~eGd~~~~myfI~~G~v~v~~~~~-------g~e~~~~~~~ 541 (717)
++..+++++++|..++++.+..++..++.+.|.+|++|+++|++++.+|||.+|.|+++..+. |++.+ +..
T Consensus 264 ~~~~~L~~v~lf~~Ls~~el~~L~~~l~~~~~~~Ge~I~~eGd~~~~~yiI~sG~v~v~~~~~~~~~~~~g~~~~--l~~ 341 (416)
T 3tnp_B 264 MYESFIESLPFLKSLEVSERLKVVDVIGTKVYNDGEQIIAQGDLADSFFIVESGEVKITMKRKGKSEVEENGAVE--IAR 341 (416)
T ss_dssp SSSSSGGGCGGGTTCCHHHHHHHHHHCEEEEECTTCEEECTTSCCCEEEEEEEEEEEEECC------------CE--EEE
T ss_pred HHHHHHhhchHhhcCCHHHHHHHHhhceEEEECCCCEEEeCCCcCCEEEEEEeCEEEEEEecCCcccccCCceeE--EEE
Confidence 445678889999999999999999999999999999999999999999999999999986543 55555 899
Q ss_pred cCCCCeecHHhHhhhcCCCCCCCCCCcccEEEEcceeEEEEEcHHHHHHHHHhcHHHHHHHH
Q 005042 542 LKEGDFCGEELLTWALDPKSVTNLPLSTRTVRALDEVEAFSLRAEELKFVASQFRRLHSRQV 603 (717)
Q Consensus 542 l~~Gd~fGe~~l~~~l~~~~~~n~p~s~~tv~A~t~~el~~L~~~df~~ll~~~P~l~~k~l 603 (717)
+++|++|||.++ +.+.+ ++++|+|+++|+++.|++++|.+++..+|++..+.+
T Consensus 342 l~~G~~fGE~al---l~~~~------r~~tv~A~~~~~ll~I~~~~f~~ll~~~p~i~~~~~ 394 (416)
T 3tnp_B 342 CFRGQYFGELAL---VTNKP------RAASAHAIGTVKCLAMDVQAFERLLGPCMEIMKRNI 394 (416)
T ss_dssp ECTTCEESGGGG---TCCSC------CSSEEEEEEEEEEEEEEHHHHHHHHCCHHHHHTCC-
T ss_pred eCCCCEecHHHH---hCCCC------ceeEEEEcCCeEEEEEEHHHHHHHhcchHHHHHHHH
Confidence 999999999988 66666 899999999999999999999999999997644333
No 48
>3e6c_C CPRK, cyclic nucleotide-binding protein; CPRK, halorespiration; HET: DNA 3C4; 1.80A {Desulfitobacterium hafniense} SCOP: a.4.5.4 b.82.3.2 PDB: 3e6b_A* 3e5u_C* 3e6d_A 3e5x_A* 3e5q_A 2h6b_A* 2h6c_A
Probab=99.43 E-value=4.5e-13 Score=137.21 Aligned_cols=124 Identities=10% Similarity=0.091 Sum_probs=106.1
Q ss_pred hccCcCCCCCcHHHHHHHHhhceeEEecCCcEEEccCCCcceEEEEEeeEEEEEEe-cCCeeeeeeeeecCCCCeecHHh
Q 005042 474 VRRVPLFANMDERLLDAICERLKPSLCTEGTCVVREGDPVVEMLLIIRGSLESVTT-DGGRTGFYNRGMLKEGDFCGEEL 552 (717)
Q Consensus 474 L~~iplF~~ls~~~l~~l~~~l~~~~~~~ge~Ii~eGd~~~~myfI~~G~v~v~~~-~~g~e~~~~~~~l~~Gd~fGe~~ 552 (717)
+..+..+..+++++++.++..++.+.|++|++|+++|++++.+|||.+|.|+++.. .+|++.+ +..+++|++||+
T Consensus 11 ~~~~~p~~~l~~~~l~~l~~~~~~~~~~~g~~i~~~G~~~~~~y~i~~G~v~~~~~~~~G~~~~--~~~~~~G~~~G~-- 86 (250)
T 3e6c_C 11 CGAIIPDNFFPIEKLRNYTQMGLIRDFAKGSAVIMPGEEITSMIFLVEGKIKLDIIFEDGSEKL--LYYAGGNSLIGK-- 86 (250)
T ss_dssp CCCSSSBSCSCCGGGGGGGGGSEEEEECTTCEEECTTCCCCSEEEEEESCEEEEEECTTSCEEE--EEEECTTCEECC--
T ss_pred hhhccchhhCCHHHHHHHHhhCeEEEECCCCEEECCCCCCCeEEEEEeeEEEEEEECCCCCEEE--EEEecCCCEEee--
Confidence 34444448899999999999999999999999999999999999999999999864 5677776 899999999999
Q ss_pred HhhhcCCCCCCCCCCcccEEEEcceeEEEEEcHHHHHHHHHhcHHHHHHHHHHHHHhhh
Q 005042 553 LTWALDPKSVTNLPLSTRTVRALDEVEAFSLRAEELKFVASQFRRLHSRQVQHTFRFYS 611 (717)
Q Consensus 553 l~~~l~~~~~~n~p~s~~tv~A~t~~el~~L~~~df~~ll~~~P~l~~k~l~~~~r~~s 611 (717)
+ +.+ . +..+++|+++|+++.|++++|.+++.++|++....++...+.+.
T Consensus 87 ~---l~~------~-~~~~~~A~~~~~v~~i~~~~~~~l~~~~p~~~~~l~~~l~~~l~ 135 (250)
T 3e6c_C 87 L---YPT------G-NNIYATAMEPTRTCWFSEKSLRTVFRTDEDMIFEIFKNYLTKVA 135 (250)
T ss_dssp C---SCC------S-CCEEEEESSSEEEEEECHHHHHHHHHHCTHHHHHHHHHHHHHHH
T ss_pred e---cCC------C-CceEEEEcccEEEEEEcHHHHHHHHHHCHHHHHHHHHHHHHHHH
Confidence 4 322 1 56899999999999999999999999999987777766665443
No 49
>3la7_A Global nitrogen regulator; activator, DNA-binding, transcription, transcription regulation; HET: BOG; 1.90A {Anabaena} PDB: 3la2_A* 3la3_A* 2xko_A* 2xgx_A* 2xhk_A* 2xkp_A*
Probab=99.41 E-value=1.9e-12 Score=132.10 Aligned_cols=117 Identities=14% Similarity=0.147 Sum_probs=99.2
Q ss_pred HHHHHHHHhhce---eEEecCCcEEEccCCCcceEEEEEeeEEEEEE-ecCCeeeeeeeeecCCCCeecHHhHhhhcCCC
Q 005042 485 ERLLDAICERLK---PSLCTEGTCVVREGDPVVEMLLIIRGSLESVT-TDGGRTGFYNRGMLKEGDFCGEELLTWALDPK 560 (717)
Q Consensus 485 ~~~l~~l~~~l~---~~~~~~ge~Ii~eGd~~~~myfI~~G~v~v~~-~~~g~e~~~~~~~l~~Gd~fGe~~l~~~l~~~ 560 (717)
+++++.+..... .+.|++|++|+++|++++.+|||.+|.|+++. ..+|++.+ +..+++|++||+.++ +.+.
T Consensus 30 ~~~l~~L~~~~~~~~~~~~~~ge~i~~~G~~~~~ly~v~~G~v~~~~~~~~G~~~~--l~~~~~g~~~G~~~~---~~~~ 104 (243)
T 3la7_A 30 ANVFRQMATGAFPPVVETFERNKTIFFPGDPAERVYFLLKGAVKLSRVYEAGEEIT--VALLRENSVFGVLSL---LTGN 104 (243)
T ss_dssp HHHHHHHCCSSCCCEEEEECTTCEEECTTSBCCEEEEEEESCEEEEEECTTCCEEE--EEEECTTCEESCHHH---HSSC
T ss_pred HHHHHHHhhccchheeEEECCCCEEEcCCCCCceEEEEEeCEEEEEEECCCCCEEE--EEEecCCCEEcchHH---hCCC
Confidence 677888888888 99999999999999999999999999999986 45677766 899999999999987 4444
Q ss_pred CCCCCCCcccEEEEcceeEEEEEcHHHHHHHHHhcHHHHHHHHHHHHHhh
Q 005042 561 SVTNLPLSTRTVRALDEVEAFSLRAEELKFVASQFRRLHSRQVQHTFRFY 610 (717)
Q Consensus 561 ~~~n~p~s~~tv~A~t~~el~~L~~~df~~ll~~~P~l~~k~l~~~~r~~ 610 (717)
+ ..+..+++|+++|+++.|++++|.+++.++|++....++...+.+
T Consensus 105 ~----~~~~~~~~A~~~~~v~~i~~~~~~~l~~~~p~~~~~l~~~l~~~l 150 (243)
T 3la7_A 105 K----SDRFYHAVAFTPVELLSAPIEQVEQALKENPELSMLMLRGLSSRI 150 (243)
T ss_dssp C----SBCCEEEEESSSEEEEEEEHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred C----CcceEEEEEccceEEEEEcHHHHHHHHHHCHHHHHHHHHHHHHHH
Confidence 3 014489999999999999999999999999998877766655433
No 50
>2ih3_C Voltage-gated potassium channel; ION channel D-amino acid semi-synthetic, membrane protein; HET: 1EM; 1.72A {Streptomyces lividans} PDB: 2ih1_C* 1r3j_C* 1k4d_C* 1r3i_C* 1k4c_C* 1r3k_C* 1r3l_C* 2bob_C* 2boc_C* 2hvj_C* 2hvk_C* 2itc_C 2itd_C 3gb7_C* 3iga_C* 1jvm_A 1s5h_C* 3ifx_A* 1j95_A 2jk5_C* ...
Probab=99.40 E-value=1.7e-12 Score=118.35 Aligned_cols=60 Identities=13% Similarity=0.283 Sum_probs=55.8
Q ss_pred HHHHHHHHHHHHhhccccCCCCccCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhH
Q 005042 346 SKLFYCLWFGLQNLSTLGQGLKTSTYIQEIIFSILIGIAGLVLLALLIGNMQTYLTSLTV 405 (717)
Q Consensus 346 ~~Y~~slywal~tlttvGygd~~~~~~~E~~f~i~i~i~G~~lfa~lIg~~~~~l~~~~~ 405 (717)
..|..|+||++.|+||+||||++|.+..+++++++.+++|++++++.+|++.+.+++...
T Consensus 60 ~~~~~a~y~~~~T~tTvGyGDi~P~t~~gr~~~~~~~~~Gi~~~~~~~~~i~~~~~~~~~ 119 (122)
T 2ih3_C 60 ITYPRALWWACETATTVAYGDLYPVTLWGRLVAVVVMVAGITSFGLVTAALATWFVGREQ 119 (122)
T ss_dssp CSHHHHHHHHHHHHTTCCCSSSCCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CccccchhheeeeeeeeecCCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 347889999999999999999999999999999999999999999999999999976544
No 51
>1o7f_A CAMP-dependent RAP1 guanine-nucleotide exchange factor; EPAC2, CAMP-GEF2, campb binding doamin, regulation; 2.5A {Mus musculus} SCOP: a.4.5.31 b.82.3.2 b.82.3.2
Probab=99.39 E-value=1.7e-12 Score=145.29 Aligned_cols=150 Identities=17% Similarity=0.215 Sum_probs=121.0
Q ss_pred HhhhcCCCHHHHH-HhCChhHHHHHHHHHHHHHhccCcCCCCCcHHHHHHHHhhceeEEecCCcEEEccCCCcceEEEEE
Q 005042 442 WLETRGVDEEHLV-QNLPKDLRRDIKRHLCLNLVRRVPLFANMDERLLDAICERLKPSLCTEGTCVVREGDPVVEMLLII 520 (717)
Q Consensus 442 w~~~~~~de~~ll-~~Lp~~Lr~~I~~~l~~~lL~~iplF~~ls~~~l~~l~~~l~~~~~~~ge~Ii~eGd~~~~myfI~ 520 (717)
+....++..+.+- =..|+..|.+...+...+.++++++|.+++++.++.++..++.+.|++|++|+++||+++.+|||.
T Consensus 11 ~~~~~~~~~e~~~~l~~~~~~rt~~~~~~i~~~l~~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~i~~~Gd~~~~~y~i~ 90 (469)
T 1o7f_A 11 HAAHSQSSAEWIACLDKRPLERSSEDVDIIFTRLKGVKAFEKFHPNLLRQICLCGYYENLEKGITLFRQGDIGTNWYAVL 90 (469)
T ss_dssp --------CHHHHHHTSCSTTCCHHHHHHHHHHHTTCTTTTTCCHHHHHHHHHHCEEEEECTTCEEECTTSBCCEEEEEE
T ss_pred ccccccCcHHHHHHhcCChhhCCHHHHHHHHHHHhCCHhhhcCCHHHHHHHHHhceEEEECCCCEEEeCCCCCCcEEEEE
Confidence 3333444444331 145788888888888899999999999999999999999999999999999999999999999999
Q ss_pred eeEEEEEEec-CCe--eeeeeeeecCCCCeecHHhHhhhcCCCCCCCCCCcccEEEEcceeEEEEEcHHHHHHHHHhcHH
Q 005042 521 RGSLESVTTD-GGR--TGFYNRGMLKEGDFCGEELLTWALDPKSVTNLPLSTRTVRALDEVEAFSLRAEELKFVASQFRR 597 (717)
Q Consensus 521 ~G~v~v~~~~-~g~--e~~~~~~~l~~Gd~fGe~~l~~~l~~~~~~n~p~s~~tv~A~t~~el~~L~~~df~~ll~~~P~ 597 (717)
+|.|+++..+ +|+ +.+ +..+++|++||+.+ + .+.+ ++++++|.++|+++.|++++|..++.++|+
T Consensus 91 ~G~v~v~~~~~~g~~~~~~--~~~~~~G~~fGe~~-l---~~~~------~~~tv~A~~~~~l~~i~~~~~~~l~~~~p~ 158 (469)
T 1o7f_A 91 AGSLDVKVSETSSHQDAVT--ICTLGIGTAFGESI-L---DNTP------RHATIVTRESSELLRIEQEDFKALWEKYRQ 158 (469)
T ss_dssp ESCEEEEECSSSCGGGCEE--EEEECTTCEECGGG-G---GTCB------CSSEEEESSSEEEEEEEHHHHHHHHHHHGG
T ss_pred eeEEEEEEecCCCCCcceE--EEEccCCCCcchhh-h---CCCC------ccceEEEccceeEEEEcHHHHHHHHHhCHH
Confidence 9999998743 443 344 89999999999987 3 2333 889999999999999999999999999998
Q ss_pred HHHHHH
Q 005042 598 LHSRQV 603 (717)
Q Consensus 598 l~~k~l 603 (717)
+....+
T Consensus 159 ~~~~l~ 164 (469)
T 1o7f_A 159 YMAGLL 164 (469)
T ss_dssp GTTTTS
T ss_pred HHHHHH
Confidence 654443
No 52
>2bgc_A PRFA; bacterial infection, human pathogen, transcriptional regulat transcription; HET: PR3; 2.3A {Listeria monocytogenes} SCOP: a.4.5.4 b.82.3.3 PDB: 2beo_A* 1omi_A
Probab=99.39 E-value=6.6e-12 Score=127.54 Aligned_cols=121 Identities=15% Similarity=0.186 Sum_probs=99.1
Q ss_pred CCCcHHHHHHHHh--hceeEEecCCcEEEccCCCcceEEEEEeeEEEEEE-ecCCeeeeeeeeecCCCCeecHHhHhhhc
Q 005042 481 ANMDERLLDAICE--RLKPSLCTEGTCVVREGDPVVEMLLIIRGSLESVT-TDGGRTGFYNRGMLKEGDFCGEELLTWAL 557 (717)
Q Consensus 481 ~~ls~~~l~~l~~--~l~~~~~~~ge~Ii~eGd~~~~myfI~~G~v~v~~-~~~g~e~~~~~~~l~~Gd~fGe~~l~~~l 557 (717)
++++++.++.++. .++.+.|++|++|+++||+++.+|||.+|.|+++. ..+|++.+ +..+ +|++||+.++ +
T Consensus 2 ~~l~~~~l~~ll~~~~~~~~~~~~ge~i~~~G~~~~~~y~I~~G~v~~~~~~~~G~e~~--~~~~-~G~~~Ge~~~---~ 75 (238)
T 2bgc_A 2 SNAQAEEFKKYLETNGIKPKQFHKKELIFNQWDPQEYCIFLYDGITKLTSISENGTIMN--LQYY-KGAFVIMSGF---I 75 (238)
T ss_dssp --CHHHHHHHHHHHTTCCCEEEETTCEEECTTCCCCEEEEEEESEEEEEEECTTSCEEE--EEEE-ESSEEEESBC---T
T ss_pred CCCCHHHHHHHHHhCCceEEEECCCCEEEeCCCCCceEEEEEecEEEEEEECCCCCEEE--EEEc-CCCEecchhh---h
Confidence 3688999999885 59999999999999999999999999999999986 45677776 6778 9999999987 4
Q ss_pred CCCCCCCCCCcccEEEEc-ceeEEEEEcHHHHHHHHHhcHHHHHHHHHHHHHhhh
Q 005042 558 DPKSVTNLPLSTRTVRAL-DEVEAFSLRAEELKFVASQFRRLHSRQVQHTFRFYS 611 (717)
Q Consensus 558 ~~~~~~n~p~s~~tv~A~-t~~el~~L~~~df~~ll~~~P~l~~k~l~~~~r~~s 611 (717)
.+.+ +++..++.|+ ++|+++.|++++|.+++.++|++....++...+.+.
T Consensus 76 ~~~~----~~~~~~~~a~~~~~~v~~i~~~~~~~l~~~~p~~~~~~~~~l~~~l~ 126 (238)
T 2bgc_A 76 DTET----SVGYYNLEVISEQATAYVIKINELKELLSKNLTHFFYVFQTLQKQVS 126 (238)
T ss_dssp TTCC----BSCCCEEEECSSEEEEEEEEHHHHHHHHHHCHHHHHHHHHHHHHHHH
T ss_pred cCCC----cCcceeEEEEEcceEEEEEeHHHHHHHHHHCHHHHHHHHHHHHHHHH
Confidence 4443 0025778888 599999999999999999999998877776655443
No 53
>1o7f_A CAMP-dependent RAP1 guanine-nucleotide exchange factor; EPAC2, CAMP-GEF2, campb binding doamin, regulation; 2.5A {Mus musculus} SCOP: a.4.5.31 b.82.3.2 b.82.3.2
Probab=99.39 E-value=1.1e-12 Score=146.99 Aligned_cols=121 Identities=15% Similarity=0.241 Sum_probs=104.9
Q ss_pred HHHHHHhccCcCCCCCcHHHHHHHHhhcee-EEecCCcEEEccCCCcceEEEEEeeEEEEEEecCCeeeeeeeeecCCCC
Q 005042 468 HLCLNLVRRVPLFANMDERLLDAICERLKP-SLCTEGTCVVREGDPVVEMLLIIRGSLESVTTDGGRTGFYNRGMLKEGD 546 (717)
Q Consensus 468 ~l~~~lL~~iplF~~ls~~~l~~l~~~l~~-~~~~~ge~Ii~eGd~~~~myfI~~G~v~v~~~~~g~e~~~~~~~l~~Gd 546 (717)
....+.++++|+|.+++++.+..++..+.. +.|++|++|+++||.++.+|||.+|.|+++..+.+ + +..+++||
T Consensus 333 ~~~~~~l~~~~~f~~l~~~~~~~l~~~~~~~~~~~~g~~i~~~G~~~~~~yiI~~G~v~v~~~~~~---~--~~~l~~G~ 407 (469)
T 1o7f_A 333 EIIYDELLHIKALSHLSTTVKRELAGVLIFESHAKGGTVLFNQGEEGTSWYIILKGSVNVVIYGKG---V--VCTLHEGD 407 (469)
T ss_dssp HHHHHHHTTCGGGTTSCHHHHHHHHHHCEEEEECSTTCEEECTTSCCCEEEEEEESEEEEEETTTE---E--EEEEETTC
T ss_pred HHHHHHHhcCHhhhhCCHHHHHHHHHHhheeeEecCCCEEEeCCCcCCeEEEEEEeEEEEEEcCCe---e--EEEecCCC
Confidence 345678999999999999999999999985 48999999999999999999999999999874331 3 78999999
Q ss_pred eecHHhHhhhcCCCCCCCCCCcccEEEEcc-eeEEEEEcHHHHHHHHHhcHHHHHHH
Q 005042 547 FCGEELLTWALDPKSVTNLPLSTRTVRALD-EVEAFSLRAEELKFVASQFRRLHSRQ 602 (717)
Q Consensus 547 ~fGe~~l~~~l~~~~~~n~p~s~~tv~A~t-~~el~~L~~~df~~ll~~~P~l~~k~ 602 (717)
+|||.++ +.+.| +.++++|++ +|+++.|++++|.+++.++|++..++
T Consensus 408 ~fGe~~l---l~~~~------~~~tv~a~~~~~~~~~i~~~~f~~ll~~~p~~~~~l 455 (469)
T 1o7f_A 408 DFGKLAL---VNDAP------RAASIVLREDNCHFLRVDKEDFNRILRDVEANTVRL 455 (469)
T ss_dssp EECGGGG---TCCSC------CSSEEEESSSSEEEEEEEHHHHHHHHHHTTCC----
T ss_pred EEEEehh---hcCCC------ceEEEEEecCCEEEEEEcHHHHHHHHHHChHHHHHH
Confidence 9999988 66666 899999999 79999999999999999999765443
No 54
>4f7z_A RAP guanine nucleotide exchange factor 4; cyclic nucleotide, regulation, auto-IN CDC25 homology domain, exocytosis; 2.60A {Mus musculus} PDB: 2byv_E
Probab=99.29 E-value=1.5e-11 Score=150.51 Aligned_cols=135 Identities=19% Similarity=0.255 Sum_probs=111.7
Q ss_pred HHHHhCChhHHHHHHHHHHHHHhccCcCCCCCcHHHHHHHHhhceeEEecCCcEEEccCCCcceEEEEEeeEEEEEEec-
Q 005042 452 HLVQNLPKDLRRDIKRHLCLNLVRRVPLFANMDERLLDAICERLKPSLCTEGTCVVREGDPVVEMLLIIRGSLESVTTD- 530 (717)
Q Consensus 452 ~ll~~Lp~~Lr~~I~~~l~~~lL~~iplF~~ls~~~l~~l~~~l~~~~~~~ge~Ii~eGd~~~~myfI~~G~v~v~~~~- 530 (717)
..|++-| .-|.+=-.++....|+++++|+++++..+.+||..+..+.+++|++|+++||+++.+|+|++|.|.++..+
T Consensus 23 ~~L~K~p-~~Rt~edl~~I~~~Lk~~~~f~~l~~~~l~~l~~~m~ye~~~~Ge~IfrqGd~gd~fYIIlsGsV~V~i~~~ 101 (999)
T 4f7z_A 23 ACLDKRP-LERSSEDVDIIFTRLKGVKAFEKFHPNLLRQICLCGYYENLEKGITLFRQGDIGTNWYAVLAGSLDVKVSET 101 (999)
T ss_dssp HHHHSCS-SSCCHHHHHHHHHHHTTCTTTTTCCHHHHHHHHHHCEEEEECTTCEEECTTSCCCEEEEEEESEEEEEECSS
T ss_pred HHhcCCc-ccCCHHHHHHHHHHHhCCHhhhcCCHHHHHHHHhheEEEEECCCCEEEcCCCcCCEEEEEEeeEEEEEEecC
Confidence 3444433 34433333455678999999999999999999999999999999999999999999999999999998642
Q ss_pred --CCeeeeeeeeecCCCCeecHHhHhhhcCCCCCCCCCCcccEEEEcceeEEEEEcHHHHHHHHHhcHHHH
Q 005042 531 --GGRTGFYNRGMLKEGDFCGEELLTWALDPKSVTNLPLSTRTVRALDEVEAFSLRAEELKFVASQFRRLH 599 (717)
Q Consensus 531 --~g~e~~~~~~~l~~Gd~fGe~~l~~~l~~~~~~n~p~s~~tv~A~t~~el~~L~~~df~~ll~~~P~l~ 599 (717)
++.+.. +..+.+|+.||| ++ +.+.| |++||+|.++|++++|++++|+.++.++|+..
T Consensus 102 ~~~~~~~~--v~~l~~G~sFGE-al---l~n~p------RtaTv~a~~~s~l~~l~r~~F~~i~~~~~e~~ 160 (999)
T 4f7z_A 102 SSHQDAVT--ICTLGIGTAFGE-SI---LDNTP------RHATIVTRESSELLRIEQEDFKALWEKYRQYM 160 (999)
T ss_dssp SCTTSCEE--EEEEETTCEECG-GG---GGTCC------CSSEEEESSSEEEEEEEHHHHHHHHHHHHHHH
T ss_pred CCCCCcee--EEEecCCcchhh-hh---ccCCC------cceEEEeccceEEEEEEHHHHHHHHHhChHHH
Confidence 222333 789999999999 66 44555 89999999999999999999999999999754
No 55
>3eff_K Voltage-gated potassium channel; FULL length KCSA, bulge helix, cell membrane, ION transport, ionic channel, membrane, transmembrane; 3.80A {Streptomyces lividans}
Probab=99.28 E-value=1.7e-11 Score=114.46 Aligned_cols=90 Identities=16% Similarity=0.268 Sum_probs=67.3
Q ss_pred HHHHHHHHHHHhhccccCCCCccCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHH-HHHHHHHHHHHHHHHhCC
Q 005042 347 KLFYCLWFGLQNLSTLGQGLKTSTYIQEIIFSILIGIAGLVLLALLIGNMQTYLTSLTVRL-EEMRIKRRDSEQWMHHRW 425 (717)
Q Consensus 347 ~Y~~slywal~tlttvGygd~~~~~~~E~~f~i~i~i~G~~lfa~lIg~~~~~l~~~~~~~-~e~~~k~~~~~~~m~~~~ 425 (717)
.|..|+||++.|+|||||||++|.+..+++++++.+++|+++++++++.+.+.+.+...+. +++..+.+.....+-.++
T Consensus 40 ~~~~a~yf~~~T~tTvGyGd~~P~t~~~r~~~~~~~~~G~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 119 (139)
T 3eff_K 40 TYPRALWWSVETATTVGYGDLYPVTLWGRLVAVVVMVAGITSFGLVTAALATWFVGREQERRGHFVRHSEKAAEEAYTRT 119 (139)
T ss_dssp CHHHHHHHHHHHHTTCCCSSSCCCSSHHHHHHHHHHHHHHHHHHHHHHHHTTTTTHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHheeeecccCCCCcCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 4778999999999999999999999999999999999999999999999999876554333 344344433333333333
Q ss_pred CCHHHHHHHHHH
Q 005042 426 LPQDLRERVRRY 437 (717)
Q Consensus 426 lp~~L~~rV~~y 437 (717)
+ +++++|+.+.
T Consensus 120 ~-~~l~~~l~~l 130 (139)
T 3eff_K 120 T-RALHERFDRL 130 (139)
T ss_dssp H-HHHHHHHHHH
T ss_pred H-HHHHHHHHHH
Confidence 3 5555555543
No 56
>3cf6_E RAP guanine nucleotide exchange factor (GEF) 4; EPAC, rapgef4, CAMP, SP-camps, GEF, gunanine nucleotide exchange factor, G-protein, GTP-binding, nucleotide-binding; HET: SP1; 2.20A {Mus musculus}
Probab=99.27 E-value=1.1e-11 Score=145.14 Aligned_cols=133 Identities=14% Similarity=0.252 Sum_probs=112.8
Q ss_pred HHHHHhCChhHHHHHHHHHHHHHhccCcCCCCCcHHHHHHHHhhce-eEEecCCcEEEccCCCcceEEEEEeeEEEEEEe
Q 005042 451 EHLVQNLPKDLRRDIKRHLCLNLVRRVPLFANMDERLLDAICERLK-PSLCTEGTCVVREGDPVVEMLLIIRGSLESVTT 529 (717)
Q Consensus 451 ~~ll~~Lp~~Lr~~I~~~l~~~lL~~iplF~~ls~~~l~~l~~~l~-~~~~~~ge~Ii~eGd~~~~myfI~~G~v~v~~~ 529 (717)
..+|.. |+..|.+.......+.++++++|.+++++.++.++..+. .+.|++|++|+++||+++.+|||.+|.|+++..
T Consensus 12 r~iL~k-~p~~r~~~d~~~l~~~L~~~~lF~~Ls~~~l~~L~~~~~~~~~~~kGe~I~~eGd~~~~lyiIlsG~V~v~~~ 90 (694)
T 3cf6_E 12 RMILRK-PPGQRTVDDLEIIYDELLHIKALSHLSTTVKRELAGVLIFESHAKGGTVLFNQGEEGTSWYIILKGSVNVVIY 90 (694)
T ss_dssp HHHHHS-CGGGCCHHHHHHHHHHHTTCGGGTTSCHHHHHHHHTTCEEEEECSTTCEEECTTSBCCEEEEEEESEEEEEET
T ss_pred HHHHcC-ChhhCCHHHHHHHHHHHHcChhhccCCHHHHHHHHHhcceEEEECCCCEEECCCCcCCeEEEEEEEEEEEEEe
Confidence 455644 444455445555678899999999999999999999998 789999999999999999999999999999875
Q ss_pred cCCeeeeeeeeecCCCCeecHHhHhhhcCCCCCCCCCCcccEEEEcc-eeEEEEEcHHHHHHHHHhcHHH
Q 005042 530 DGGRTGFYNRGMLKEGDFCGEELLTWALDPKSVTNLPLSTRTVRALD-EVEAFSLRAEELKFVASQFRRL 598 (717)
Q Consensus 530 ~~g~e~~~~~~~l~~Gd~fGe~~l~~~l~~~~~~n~p~s~~tv~A~t-~~el~~L~~~df~~ll~~~P~l 598 (717)
+ + .+ +..+++||+||+.++ +.+.+ +.++++|++ +|+++.|++++|.++++++|.+
T Consensus 91 g--~-~i--l~~l~~Gd~fGe~al---~~~~~------~~~tv~A~edd~~ll~I~~~~f~~ll~~~p~l 146 (694)
T 3cf6_E 91 G--K-GV--VCTLHEGDDFGKLAL---VNDAP------RAASIVLREDNCHFLRVDKEDFNRILRDVEAN 146 (694)
T ss_dssp T--T-EE--EEEEETTCEECHHHH---HHTCB------CSSEEEECSSSEEEEEEEHHHHHHHTTTTCCC
T ss_pred C--C-EE--EEEeCCCCEeehHHH---hCCCC------ceEEEEEeeCceEEEEEeHHHHHHHHHHCHHH
Confidence 3 2 33 799999999999987 44444 889999999 5999999999999999998875
No 57
>3rvy_A ION transport protein; tetrameric ION channel, voltage-gated sodium-selective ION C membrane, metal transport; HET: PX4; 2.70A {Arcobacter butzleri} PDB: 3rvz_A* 4ekw_A* 3rw0_A*
Probab=99.25 E-value=4.5e-11 Score=125.26 Aligned_cols=62 Identities=11% Similarity=0.078 Sum_probs=48.3
Q ss_pred HHHHHHHHHHHHHhhccccCC-CCc-cCchhH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHH
Q 005042 345 LSKLFYCLWFGLQNLSTLGQG-LKT-STYIQE----IIFSILIGIAGLVLLALLIGNMQTYLTSLTVR 406 (717)
Q Consensus 345 ~~~Y~~slywal~tlttvGyg-d~~-~~~~~E----~~f~i~i~i~G~~lfa~lIg~~~~~l~~~~~~ 406 (717)
+..+..|+||+++++||+||| |+. |.+... ..|++++++.|.++.+..+|.+.+.++....+
T Consensus 178 F~s~~~a~~~~~~~~T~~g~~~di~~p~~~~~~~~~~~f~~~~~i~~~~~lnl~~aii~~~f~~~~~~ 245 (285)
T 3rvy_A 178 FGTLGESFYTLFQVMTLESWSMGIVRPLMEVYPYAWVFFIPFIFVVTFVMINLVVAICVDAMAILNQK 245 (285)
T ss_dssp HSSHHHHHHHHHHHHTTTTCCCCCHHHHHTTCTTTHHHHHHHHHHHHHHHHHHHHHHHHHHC------
T ss_pred cCCHHHHHHHHHHHHHhCCCcHHHHHHHHHcCChHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445667999999999999999 985 666543 88999999999999999999999888655443
No 58
>3b02_A Transcriptional regulator, CRP family; structural genomics, riken structural genomics/proteomics in RSGI; 1.92A {Thermus thermophilus} PDB: 2zdb_A
Probab=99.20 E-value=7.6e-11 Score=115.77 Aligned_cols=94 Identities=18% Similarity=0.198 Sum_probs=80.4
Q ss_pred EEecCCcEEEccCCCcceEEEEEeeEEEEEEe-cCCeeeeeeeeecCCCCeecHHhHhhhcCCCCCCCCCCcccEEEEcc
Q 005042 498 SLCTEGTCVVREGDPVVEMLLIIRGSLESVTT-DGGRTGFYNRGMLKEGDFCGEELLTWALDPKSVTNLPLSTRTVRALD 576 (717)
Q Consensus 498 ~~~~~ge~Ii~eGd~~~~myfI~~G~v~v~~~-~~g~e~~~~~~~l~~Gd~fGe~~l~~~l~~~~~~n~p~s~~tv~A~t 576 (717)
+.|++|++|+++||+++.+|||.+|.|+++.. .+|++.+ +..+++|++||+ ++ +.+.+ +.++++|++
T Consensus 2 ~~~~~g~~i~~~g~~~~~~y~i~~G~v~~~~~~~~g~~~~--~~~~~~G~~~Ge-~~---~~~~~------~~~~~~A~~ 69 (195)
T 3b02_A 2 KRFARKETIYLRGEEARTLYRLEEGLVRVVELLPDGRLIT--LRHVLPGDYFGE-EA---LEGKA------YRYTAEAMT 69 (195)
T ss_dssp EEECTTCEEECTTSBCCCEEEEEESCEEEEEECTTSCEEE--EEEECTTCEECG-GG---GTCSB------CSSEEEESS
T ss_pred eEcCCCCEEECCCCCCCeEEEEEeCEEEEEEECCCCCEEE--EEEecCCCEech-hh---hCCCC------ceeEEEECC
Confidence 57999999999999999999999999999864 4677766 899999999999 88 66655 889999999
Q ss_pred eeEEEEEcHHHHHHHHHhcHHHHHHHHHHHHHh
Q 005042 577 EVEAFSLRAEELKFVASQFRRLHSRQVQHTFRF 609 (717)
Q Consensus 577 ~~el~~L~~~df~~ll~~~P~l~~k~l~~~~r~ 609 (717)
+|+++.|++++|. |++....++...+.
T Consensus 70 ~~~v~~i~~~~~~------p~~~~~~~~~l~~~ 96 (195)
T 3b02_A 70 EAVVQGLEPRAMD------HEALHRVARNLARQ 96 (195)
T ss_dssp SEEEEEECGGGCC------HHHHHHHHHHHHHH
T ss_pred cEEEEEEcHHHcC------HHHHHHHHHHHHHH
Confidence 9999999999998 77766665554443
No 59
>4f7z_A RAP guanine nucleotide exchange factor 4; cyclic nucleotide, regulation, auto-IN CDC25 homology domain, exocytosis; 2.60A {Mus musculus} PDB: 2byv_E
Probab=99.16 E-value=1.1e-10 Score=142.89 Aligned_cols=115 Identities=14% Similarity=0.233 Sum_probs=101.2
Q ss_pred HHHHHHhccCcCCCCCcHHHHHHHHhhceeEE-ecCCcEEEccCCCcceEEEEEeeEEEEEEecCCeeeeeeeeecCCCC
Q 005042 468 HLCLNLVRRVPLFANMDERLLDAICERLKPSL-CTEGTCVVREGDPVVEMLLIIRGSLESVTTDGGRTGFYNRGMLKEGD 546 (717)
Q Consensus 468 ~l~~~lL~~iplF~~ls~~~l~~l~~~l~~~~-~~~ge~Ii~eGd~~~~myfI~~G~v~v~~~~~g~e~~~~~~~l~~Gd 546 (717)
+...+.+.++|.|.+++...++.++..+.... ++.|++|++|||.++.+|||.+|.|+++...++. +..+++||
T Consensus 333 e~l~e~L~~i~~f~~Ls~~v~r~L~~~l~~~~~~kaGtvI~rQGE~gds~YIIlsG~V~V~~~~~~~-----v~~L~~Gd 407 (999)
T 4f7z_A 333 EIIYDELLHIKALSHLSTTVKRELAGVLIFESHAKGGTVLFNQGEEGTSWYIILKGSVNVVIYGKGV-----VCTLHEGD 407 (999)
T ss_dssp HHHHHHHTTCGGGTTSCHHHHHHHTTTCEEEEESSTTCEEECTTSBCCEEEEEEESEEEEEETTTEE-----EEEEETTC
T ss_pred HHHHHHHHhhHHHhcCCHHHHHHHHHhhhhheeccCCCEEEeCCCcCCeEEEEEeeEEEEEEcCCcc-----eEEecCCC
Confidence 34467789999999999999999999999765 5779999999999999999999999998654332 78899999
Q ss_pred eecHHhHhhhcCCCCCCCCCCcccEEEEcce-eEEEEEcHHHHHHHHHhcH
Q 005042 547 FCGEELLTWALDPKSVTNLPLSTRTVRALDE-VEAFSLRAEELKFVASQFR 596 (717)
Q Consensus 547 ~fGe~~l~~~l~~~~~~n~p~s~~tv~A~t~-~el~~L~~~df~~ll~~~P 596 (717)
+|||.++ +.+.| +.+||+|.++ |++++|++++|.+++.+-.
T Consensus 408 ~FGElAL---L~~~P------R~aTV~a~~d~c~fl~i~k~df~~il~~~e 449 (999)
T 4f7z_A 408 DFGKLAL---VNDAP------RAASIVLREDNCHFLRVDKEDGNRILRDVE 449 (999)
T ss_dssp EECGGGG---TCSCB------CSSEEEESSSSEEEEEEEHHHHHHHHHHHH
T ss_pred cccchhh---ccCCC------eeEEEEEecCceEEEEeeHHHHHHHHhHHH
Confidence 9999998 77777 9999999985 9999999999999997743
No 60
>2zcw_A TTHA1359, transcriptional regulator, FNR/CRP family; stationary phase, DNA-binding, transcription regulation; 1.50A {Thermus thermophilus}
Probab=99.11 E-value=2.3e-10 Score=112.87 Aligned_cols=99 Identities=17% Similarity=0.188 Sum_probs=79.4
Q ss_pred HHhhceeEEecCCcEEEccCCCc--ceEEEEEeeEEEEEEe-cCCeeeeeeeeecCCCCeecHHhHhhhcCCCCCCCCCC
Q 005042 491 ICERLKPSLCTEGTCVVREGDPV--VEMLLIIRGSLESVTT-DGGRTGFYNRGMLKEGDFCGEELLTWALDPKSVTNLPL 567 (717)
Q Consensus 491 l~~~l~~~~~~~ge~Ii~eGd~~--~~myfI~~G~v~v~~~-~~g~e~~~~~~~l~~Gd~fGe~~l~~~l~~~~~~n~p~ 567 (717)
+...++.+.|++|++|+++||++ +.+|||.+|.|+++.. .+|++.+ +..+++|++||+ ++ +.+.+
T Consensus 1 l~~~~~~~~~~~g~~i~~~g~~~~~~~~y~v~~G~v~~~~~~~~G~~~~--~~~~~~g~~~G~-~~---l~~~~------ 68 (202)
T 2zcw_A 1 MTQVRETVSFKAGDVILYPGVPGPRDRAYRVLEGLVRLEAVDEEGNALT--LRLVRPGGFFGE-EA---LFGQE------ 68 (202)
T ss_dssp -----CCEEECTTCEEECSBSCCTTCCCEEEEESCEEEEEECTTSCEEE--EEEECTTCEECT-HH---HHTCC------
T ss_pred CCccceEEEECCCCEEECCCCCCCCCeEEEEEeCEEEEEEECCCCcEEE--EEEecCCCEeee-hh---cCCCC------
Confidence 34667889999999999999999 9999999999999864 4677766 899999999999 66 44455
Q ss_pred cccEEEEcceeEEEEEcHHHHHHHHHhcHHHHHHHHHHHHH
Q 005042 568 STRTVRALDEVEAFSLRAEELKFVASQFRRLHSRQVQHTFR 608 (717)
Q Consensus 568 s~~tv~A~t~~el~~L~~~df~~ll~~~P~l~~k~l~~~~r 608 (717)
+..+++|+++|+++.| +++|. |++....++...+
T Consensus 69 ~~~~~~A~~~~~v~~i-~~~~~------p~~~~~~~~~l~~ 102 (202)
T 2zcw_A 69 RIYFAEAATDVRLEPL-PENPD------PELLKDLAQHLSQ 102 (202)
T ss_dssp BCSEEEESSCEEEEEC-CSSCC------HHHHHHHHHHHHH
T ss_pred cceEEEEcccEEEEEE-hHhcC------HHHHHHHHHHHHH
Confidence 7899999999999999 98886 7766655555444
No 61
>2q67_A Potassium channel protein; inverted teepee, helix bundle, tetramer, central cavity, ION metal transport, membrane protein; 2.30A {Bacillus cereus} PDB: 2q68_A 2q6a_A 2q69_A 2ahy_A 2ahz_A
Probab=99.07 E-value=8.2e-10 Score=99.26 Aligned_cols=61 Identities=21% Similarity=0.252 Sum_probs=52.3
Q ss_pred HHHHHHHHHHhhccccCCCCccCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHH
Q 005042 348 LFYCLWFGLQNLSTLGQGLKTSTYIQEIIFSILIGIAGLVLLALLIGNMQTYLTSLTVRLE 408 (717)
Q Consensus 348 Y~~slywal~tlttvGygd~~~~~~~E~~f~i~i~i~G~~lfa~lIg~~~~~l~~~~~~~~ 408 (717)
|..|+||++.|+||+||||++|.+..+++++++.+++|+.++++.++++.+.++......+
T Consensus 50 ~~~a~y~~~~T~tTvGyGdi~P~t~~gr~~~~~~~~~G~~~~~~~~~~l~~~~~~~~~~~~ 110 (114)
T 2q67_A 50 PIDALYFSVVTLTTVGAGNFSPQTDFGKIFTILYIFIGIGLVFGFIHKLAVNVQLPSILSN 110 (114)
T ss_dssp HHHHHHHHHHHHTSCCCSSCCCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC------
T ss_pred HHHHHHHHHHHhcceeCCCCccCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5679999999999999999999999999999999999999999999999998855544333
No 62
>3ouf_A Potassium channel protein; ION channel, membrane, membrane protein; 1.55A {Bacillus cereus} PDB: 3t4z_A 3tcu_A 3t1c_A 3tet_A 3t4d_A 3t2m_A 3e86_A 3e83_A 3e89_A 3e8b_A 3e8f_A 3e8g_A 3e8h_A 3k0d_A 3k0g_A 3k06_A 3k08_A 3k04_A 3k03_A
Probab=99.02 E-value=1.8e-09 Score=94.17 Aligned_cols=56 Identities=23% Similarity=0.252 Sum_probs=52.5
Q ss_pred HHHHHHHHHHhhccccCCCCccCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 005042 348 LFYCLWFGLQNLSTLGQGLKTSTYIQEIIFSILIGIAGLVLLALLIGNMQTYLTSL 403 (717)
Q Consensus 348 Y~~slywal~tlttvGygd~~~~~~~E~~f~i~i~i~G~~lfa~lIg~~~~~l~~~ 403 (717)
|..|+||++.|+||+||||++|.+..+++++++.+++|+.+++++++.++..++..
T Consensus 33 ~~~a~yf~~~T~tTvGyGdi~P~t~~gr~~~~~~~~~G~~~~~~~i~~i~~~~~~~ 88 (97)
T 3ouf_A 33 PIDALYFSVVTLTTVGYGDFSPQTDFGKIFTILYIFIGIGLVFGFIHKLAVNVQLP 88 (97)
T ss_dssp HHHHHHHHHHHHTTCCCCSSCCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHH
T ss_pred HHHHHHHHHHHHHccCCCCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH
Confidence 56799999999999999999999999999999999999999999999999988643
No 63
>2k1e_A Water soluble analogue of potassium channel, KCSA; homotetramer, ION transport, ionic channel, membrane, transmembrane, transport; NMR {Escherichia coli} PDB: 2kb1_A
Probab=98.99 E-value=1.3e-10 Score=102.65 Aligned_cols=59 Identities=15% Similarity=0.227 Sum_probs=54.1
Q ss_pred HHHHHHHHHHHhhccccCCCCccCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhH
Q 005042 347 KLFYCLWFGLQNLSTLGQGLKTSTYIQEIIFSILIGIAGLVLLALLIGNMQTYLTSLTV 405 (717)
Q Consensus 347 ~Y~~slywal~tlttvGygd~~~~~~~E~~f~i~i~i~G~~lfa~lIg~~~~~l~~~~~ 405 (717)
.|..|+||++.|+||+||||++|.+..+++++++.+++|+.++++++|.+.+.+.+...
T Consensus 40 ~~~~a~y~~~~T~tTvGyGDi~P~t~~gr~~~~~~~l~G~~~~~~~~~~i~~~~~~~~~ 98 (103)
T 2k1e_A 40 SYPDAIWWSVETATTVGYGDRYPVTEEGRKVAEQVMKAGIEVFALVTAALATDFVRREE 98 (103)
T ss_dssp CGGGTTTTTTGGGGCCSCCSSCCCSSSCTHHHHHHHHHHHHHHHHTHHHHHTTGGGHHH
T ss_pred cHHHHHHHHHHHHhcccCCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35668999999999999999999999999999999999999999999999998876544
No 64
>3ldc_A Calcium-gated potassium channel MTHK; transmembrane, ION channel, open conformation, IO transport; 1.45A {Methanothermobacter thermautotrophicusorganism_taxid} PDB: 3lde_A 4hyo_A 4hz3_D 3r65_A 3ous_A 3ldd_A
Probab=98.90 E-value=3.1e-09 Score=89.65 Aligned_cols=54 Identities=15% Similarity=0.290 Sum_probs=51.2
Q ss_pred HHHHHHHHHHHhhccccCCCCccCchhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005042 347 KLFYCLWFGLQNLSTLGQGLKTSTYIQEIIFSILIGIAGLVLLALLIGNMQTYL 400 (717)
Q Consensus 347 ~Y~~slywal~tlttvGygd~~~~~~~E~~f~i~i~i~G~~lfa~lIg~~~~~l 400 (717)
.|..|+||++.|+||+||||+.|.+..+++++++.+++|+.++++.++++.+.+
T Consensus 28 ~~~~a~yf~~~T~tTvGyGdi~P~t~~~r~~~~~~~~~G~~~~~~~~~~i~~~l 81 (82)
T 3ldc_A 28 SWTVSLYWTFVTIATVGYGDYSPHTPLGMYFTCTLIVLGIGTFAVAVERLLEFL 81 (82)
T ss_dssp CHHHHHHHHHHHHTTCCCCSSCCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHhcccCCCCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 367799999999999999999999999999999999999999999999998875
No 65
>3pjs_K KCSA, voltage-gated potassium channel; ION channel, conducts K+ IONS, cell membrane, transport PROT; 3.80A {Streptomyces lividans} PDB: 1f6g_A
Probab=98.87 E-value=1.2e-10 Score=112.16 Aligned_cols=65 Identities=15% Similarity=0.349 Sum_probs=58.4
Q ss_pred HHHHHHHHHHHHHhhccccCCCCccCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHH
Q 005042 345 LSKLFYCLWFGLQNLSTLGQGLKTSTYIQEIIFSILIGIAGLVLLALLIGNMQTYLTSLTVRLEE 409 (717)
Q Consensus 345 ~~~Y~~slywal~tlttvGygd~~~~~~~E~~f~i~i~i~G~~lfa~lIg~~~~~l~~~~~~~~e 409 (717)
...|..|+||++.|+|||||||++|.+..+++++++.+++|++++++++|.+.+.+.+...+.++
T Consensus 65 ~~~~~~a~yf~~~T~tTvGyGDi~P~t~~~r~~~~~~~l~G~~~~~~~~~~i~~~~~~~~~~~~~ 129 (166)
T 3pjs_K 65 LITYPRALWWSVETATTVGYGDLYPVTLWGRLVAVVVMVAGITSFGLVTAALATWFVGQEQQQQQ 129 (166)
T ss_dssp CCSTTTTTTTTHHHHSCCCCSSSCCCSSTTTTTTHHHHHHHHHHHHHHHTTSSSSSSSSHHHHHH
T ss_pred cCCHHHHHHHHHHHhccccCCCCCCCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34577899999999999999999999999999999999999999999999999998876655543
No 66
>3um7_A Potassium channel subfamily K member 4; potassium ION channel, metal transport; 3.31A {Homo sapiens}
Probab=98.73 E-value=4.8e-08 Score=102.26 Aligned_cols=57 Identities=21% Similarity=0.319 Sum_probs=54.5
Q ss_pred HHHHHHHHHHHhhccccCCCCccCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 005042 347 KLFYCLWFGLQNLSTLGQGLKTSTYIQEIIFSILIGIAGLVLLALLIGNMQTYLTSL 403 (717)
Q Consensus 347 ~Y~~slywal~tlttvGygd~~~~~~~E~~f~i~i~i~G~~lfa~lIg~~~~~l~~~ 403 (717)
.|..|+||+++|+|||||||++|.|...++|+++.+++|+.+++++++.++..+...
T Consensus 115 ~~~~a~yf~~~t~tTvGYGdi~P~T~~gk~~~i~~~l~Gi~~~~~~~~~i~~~l~~~ 171 (309)
T 3um7_A 115 DLGSAFFFSGTIITTIGYGNVALRTDAGRLFCIFYALVGIPLFGILLAGVGDRLGSS 171 (309)
T ss_dssp SHHHHHHHHHHHHTSCCCCSSCCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ChhhhhHhhheeeeecccCCCCCCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 699999999999999999999999999999999999999999999999999988653
No 67
>1xl4_A Inward rectifier potassium channel; integral membrane protein, ION channel, inwardly rectifying channel, metal transport; 2.60A {Magnetospirillum magnetotacticum} SCOP: b.1.18.16 f.14.1.1 PDB: 1xl6_A* 2wlh_A 2wli_B 2wlj_A* 2wlk_A* 2wlm_A 2wlo_A 2wln_A 3zrs_A 2wli_A 2x6c_A* 2x6b_A* 2x6a_A*
Probab=98.67 E-value=6e-08 Score=101.77 Aligned_cols=55 Identities=18% Similarity=0.242 Sum_probs=51.4
Q ss_pred HHHHHHHHHHHhhccccCCCCccCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005042 347 KLFYCLWFGLQNLSTLGQGLKTSTYIQEIIFSILIGIAGLVLLALLIGNMQTYLT 401 (717)
Q Consensus 347 ~Y~~slywal~tlttvGygd~~~~~~~E~~f~i~i~i~G~~lfa~lIg~~~~~l~ 401 (717)
.|..|+||++.|+||+||||++|.+..+++++++.+++|++++|+++|.+.+.+.
T Consensus 82 s~~~a~yfs~vT~tTvGYGDi~P~t~~gr~~~~~~~l~G~~~~a~~~g~v~~~~~ 136 (301)
T 1xl4_A 82 SFTDAFFFSVQTMATIGYGKLIPIGPLANTLVTLEALCGMLGLAVAASLIYARFT 136 (301)
T ss_dssp CHHHHHHHHHHHHTTCCCSSSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred CHHHHHHHhhhheeccCCCCCcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4678999999999999999999999999999999999999999999998887764
No 68
>2qks_A KIR3.1-prokaryotic KIR channel chimera; G-protein gated inward rectifier, potassium channel selectivity filter, metal transport; HET: BNG; 2.20A {Burkholderia xenovorans}
Probab=98.59 E-value=1.4e-07 Score=99.74 Aligned_cols=58 Identities=17% Similarity=0.200 Sum_probs=53.6
Q ss_pred HHHHHHHHHHHhhccccCCCCccCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 005042 347 KLFYCLWFGLQNLSTLGQGLKTSTYIQEIIFSILIGIAGLVLLALLIGNMQTYLTSLT 404 (717)
Q Consensus 347 ~Y~~slywal~tlttvGygd~~~~~~~E~~f~i~i~i~G~~lfa~lIg~~~~~l~~~~ 404 (717)
.|..|+||++.|+|||||||++|.+...++++++.+++|++++|+++|.+.+.+....
T Consensus 78 s~~~a~y~s~vT~tTVGYGDi~P~t~~gr~~~~~~~l~G~~~~a~~~g~i~~~~~~~~ 135 (321)
T 2qks_A 78 GFGGAFFFSVETLATVGYGDMHPQTVYAHWIATLEIFVGMSSIALATGCAFIKMSQPK 135 (321)
T ss_dssp THHHHHHHHHHHHTTCCCCSSCBCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCC
T ss_pred chhheeeeeeEEeccccCCCcCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4667999999999999999999999999999999999999999999999998886543
No 69
>1p7b_A Integral membrane channel and cytosolic domains; transmembrane helices, ION conduction, immunoglobulin fold, assembly; 3.65A {Burkholderia pseudomallei} SCOP: b.1.18.16 f.14.1.1 PDB: 2wll_B* 2wll_A*
Probab=98.55 E-value=1e-07 Score=101.09 Aligned_cols=58 Identities=17% Similarity=0.219 Sum_probs=53.3
Q ss_pred HHHHHHHHHHHhhccccCCCCccCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 005042 347 KLFYCLWFGLQNLSTLGQGLKTSTYIQEIIFSILIGIAGLVLLALLIGNMQTYLTSLT 404 (717)
Q Consensus 347 ~Y~~slywal~tlttvGygd~~~~~~~E~~f~i~i~i~G~~lfa~lIg~~~~~l~~~~ 404 (717)
.|..|+||++.|+||+||||++|.+..+++++++.+++|++++|+++|.+.+.+....
T Consensus 96 s~~~a~yfs~vT~tTVGYGDi~P~t~~gr~~~~~~~l~G~~~~a~~ig~i~~~~~~~~ 153 (333)
T 1p7b_A 96 GFVGAFFFSVETLATVGYGDMHPQTVYAHAIATLEIFVGMSGIALSTGLVFARFARPR 153 (333)
T ss_dssp STHHHHHHHTTTTTTCCCSCCCCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCC
T ss_pred cHHHhHhhhheeeeecCCCCCcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3568999999999999999999999999999999999999999999999998876443
No 70
>3sya_A G protein-activated inward rectifier potassium CH; ION channel, potassium channel, inward rectification, sodium PIP2 binding, G protein binding; HET: PIO; 2.98A {Mus musculus} PDB: 3syo_A 3syc_A 3syp_A 3syq_A*
Probab=98.49 E-value=5.9e-07 Score=95.13 Aligned_cols=59 Identities=20% Similarity=0.405 Sum_probs=51.8
Q ss_pred HHHHHHHHHHhhccccCCCCccC--chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHH
Q 005042 348 LFYCLWFGLQNLSTLGQGLKTST--YIQEIIFSILIGIAGLVLLALLIGNMQTYLTSLTVR 406 (717)
Q Consensus 348 Y~~slywal~tlttvGygd~~~~--~~~E~~f~i~i~i~G~~lfa~lIg~~~~~l~~~~~~ 406 (717)
+..++||++.|+|||||||+.|+ +...++++++.+++|+++.|+++|.+.+-+..-..+
T Consensus 92 f~~af~fSv~T~TTvGYGd~~p~~~~~~g~~l~~~~~l~G~~l~a~~~giv~ak~srp~~r 152 (340)
T 3sya_A 92 FVSAFLFSIETETTIGYGYRVITDKCPEGIILLLIQSVLGSIVNAFMVGCMFVKISQPKKR 152 (340)
T ss_dssp TTHHHHHHHHHHSCCCCSSSCBCTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCGGGG
T ss_pred HHHHHhhhheeeeeecCCCccCcCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhhc
Confidence 45689999999999999999997 688999999999999999999999888877655443
No 71
>4gx0_A TRKA domain protein; membrane protein, ION channel, ADP binding, NAD binding, MEM transport protein; HET: MAL GLC; 2.60A {Geobacter sulfurreducens} PDB: 4gx1_A* 4gx2_A* 4gx5_A 4gvl_A*
Probab=98.39 E-value=1.1e-06 Score=100.68 Aligned_cols=53 Identities=15% Similarity=0.374 Sum_probs=48.7
Q ss_pred HHHHHHHHHHhhccccCCCCccCchhHHHHHHHHHHHHHHHHHHHHHH-HHHHH
Q 005042 348 LFYCLWFGLQNLSTLGQGLKTSTYIQEIIFSILIGIAGLVLLALLIGN-MQTYL 400 (717)
Q Consensus 348 Y~~slywal~tlttvGygd~~~~~~~E~~f~i~i~i~G~~lfa~lIg~-~~~~l 400 (717)
|+.|+||++.|+||+||||++|.+..+++++++++++|++++++.++. +.+++
T Consensus 52 ~~~~~y~~~~t~tTvGygd~~p~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~ 105 (565)
T 4gx0_A 52 FMAGIYWTITVMTTLGFGDITFESDAGYLFASIVTVSGVIFLDIILPFGFVSMF 105 (565)
T ss_dssp HHHHHHHHHHHHTTCCCCSSCCCSHHHHHHHHHHHHHHHHHHHTHHHHHHHHHH
T ss_pred hhhhhheeeeeeeeecCCCcCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 567999999999999999999999999999999999999999999998 55544
No 72
>3ukm_A Potassium channel subfamily K member 1; membrane protein, eukaryotic, two-pore DO potassium channel, K2P channel, membrane; HET: UND; 3.40A {Homo sapiens}
Probab=98.28 E-value=1.2e-06 Score=90.29 Aligned_cols=55 Identities=22% Similarity=0.301 Sum_probs=52.2
Q ss_pred HHHHHHHHHHHhhccccCCCCccCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005042 347 KLFYCLWFGLQNLSTLGQGLKTSTYIQEIIFSILIGIAGLVLLALLIGNMQTYLT 401 (717)
Q Consensus 347 ~Y~~slywal~tlttvGygd~~~~~~~E~~f~i~i~i~G~~lfa~lIg~~~~~l~ 401 (717)
.|..|+||+++|+||+||||++|.|...++|+++.+++|+.+++++++++...+.
T Consensus 93 ~~~~a~yf~~~t~tTvGyGd~~P~T~~Gk~f~~~~~l~Gi~~~~~~~~~~~~~l~ 147 (280)
T 3ukm_A 93 DFTSALFFASTVLSTTGYGHTVPLSDGGKAFCIIYSVIGIPFTLLFLTAVVQRIT 147 (280)
T ss_dssp SHHHHHHHHHHHHTTCCCCSSCCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ChhcchhheeeeeeccccCCcCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 7889999999999999999999999999999999999999999999999987654
No 73
>4dxw_A Navrh, ION transport protein; tetrameric, voltage-gated sodium channel, sodium selective, gated ION channel; HET: BNG PX4; 3.05A {Alpha proteobacterium HIMB114}
Probab=98.28 E-value=1.9e-05 Score=79.53 Aligned_cols=75 Identities=12% Similarity=0.134 Sum_probs=49.8
Q ss_pred HHHHHHHHHHHHHHhhhccccccccccCCccccccccchhHHHHHHHHHHHHHHHHhHhhhceeeEEcCCCcccCCCeEe
Q 005042 79 FWNRLFVFTCFISVSIDPLFFYLPFFDKENYCLGMDVQLAAAITTFRSILDCIYSCRIPFQFRTAYIAPSSRVFGRGELV 158 (717)
Q Consensus 79 ~W~~~~li~~i~~~~v~Pl~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~Di~f~~Di~l~F~tay~~~~s~~~~~G~lV 158 (717)
.++.++.++++.+++..-+.-+ +.+.........++.++-++|.+|+++++... |
T Consensus 13 ~f~~~i~~~I~ln~i~l~~~~~-----------~~~~~~~~~l~~~e~~~~~iF~~E~~lri~~~-----------~--- 67 (229)
T 4dxw_A 13 IFQFTVVSIIILNAVLIGATTY-----------ELDPLFLETIHLLDYGITIFFVIEILIRFIGE-----------K--- 67 (229)
T ss_dssp HHHHHHHHHHHHHHHSTTTCCS-----------SSCHHHHHHHHHHHHHHHHHHHHHHHHHHHC----------------
T ss_pred hHHHHHHHHHHHHHHHHHHccC-----------CCChHHHHHHHHHHHHHHHHHHHHHHHHHHHc-----------C---
Confidence 5788888888888877655421 12334455778899999999999999998753 1
Q ss_pred eCHHHHHHHHHhh-hhHHHhhhccch
Q 005042 159 VDPALISRRYFRR-LFLVDFLSVLPI 183 (717)
Q Consensus 159 ~d~~~Ia~rYl~~-~F~iDlls~lPl 183 (717)
-.++|+++ |=++|++.++|.
T Consensus 68 -----~~~~y~~~~wni~D~~~v~~~ 88 (229)
T 4dxw_A 68 -----QKADFFKSGWNIFDTVIVAIS 88 (229)
T ss_dssp ------------CHHHHHHHHHHHHT
T ss_pred -----chhHHhcCCcHHHHHHHHHHH
Confidence 13579988 889998877764
No 74
>3spc_A Inward-rectifier K+ channel KIR2.2; PIP, membrane protein, lipid, receptor, metal transport; HET: P8P; 2.45A {Gallus gallus} PDB: 3jyc_A* 3spi_A* 3sph_A* 3spj_A 3spg_A*
Probab=98.25 E-value=3.5e-06 Score=89.35 Aligned_cols=59 Identities=15% Similarity=0.385 Sum_probs=51.7
Q ss_pred HHHHHHHHHHHHhhccccCCCCccC--chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 005042 346 SKLFYCLWFGLQNLSTLGQGLKTST--YIQEIIFSILIGIAGLVLLALLIGNMQTYLTSLT 404 (717)
Q Consensus 346 ~~Y~~slywal~tlttvGygd~~~~--~~~E~~f~i~i~i~G~~lfa~lIg~~~~~l~~~~ 404 (717)
..+..+|||++.|+||+||||+.|+ +....+++.+.+++|+++.|+++|-+.+-+..-.
T Consensus 93 ~sf~~af~fSv~T~TTvGYGd~~p~~~~~~~~~l~~~~~l~G~~l~a~~~giv~ak~srp~ 153 (343)
T 3spc_A 93 NGFVAAFLFSIETQTTIGYGFRCVTEECPLAVFMVVVQSIVGCIIDSFMIGAIMAKMARPK 153 (343)
T ss_dssp CSHHHHHHHHHHHHSCCCCSSSEECSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCS
T ss_pred CCHHHHhheeeeeeEeecCCCccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHH
Confidence 4467799999999999999999864 7899999999999999999999998887765543
No 75
>3um7_A Potassium channel subfamily K member 4; potassium ION channel, metal transport; 3.31A {Homo sapiens}
Probab=98.25 E-value=3.8e-07 Score=95.46 Aligned_cols=60 Identities=17% Similarity=0.231 Sum_probs=53.7
Q ss_pred HHHHHHHHHHhhccccCCCCccCchhHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHH
Q 005042 348 LFYCLWFGLQNLSTLGQGLKTSTYIQEI------IFSILIGIAGLVLLALLIGNMQTYLTSLTVRL 407 (717)
Q Consensus 348 Y~~slywal~tlttvGygd~~~~~~~E~------~f~i~i~i~G~~lfa~lIg~~~~~l~~~~~~~ 407 (717)
|+.|+||++.|+|||||||+.|.+..++ +++++++++|+.+++++++.+++.+.....+.
T Consensus 225 ~~da~y~~~vTltTvGyGd~~p~t~~g~~~~~y~~~~~~~il~Gl~~~a~~~~~i~~~~~~~~~r~ 290 (309)
T 3um7_A 225 KLEAIYFVIVTLTTVGFGDYVAGADPRQDSPAYQPLVWFWILLGLAYFASVLTTIGNWLRVVSRRT 290 (309)
T ss_dssp HHHHHHHHHHHHTTCCCSSCCTTCCTTCCCSTHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTTTTC
T ss_pred HHHHHHHHHhheeccccCCCCCCCccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6789999999999999999999998876 59999999999999999999999887665433
No 76
>3ukm_A Potassium channel subfamily K member 1; membrane protein, eukaryotic, two-pore DO potassium channel, K2P channel, membrane; HET: UND; 3.40A {Homo sapiens}
Probab=98.13 E-value=1.7e-06 Score=89.23 Aligned_cols=57 Identities=16% Similarity=0.123 Sum_probs=51.5
Q ss_pred HHHHHHHHHHhhccccCCCCccCchh-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 005042 348 LFYCLWFGLQNLSTLGQGLKTSTYIQ-------EIIFSILIGIAGLVLLALLIGNMQTYLTSLT 404 (717)
Q Consensus 348 Y~~slywal~tlttvGygd~~~~~~~-------E~~f~i~i~i~G~~lfa~lIg~~~~~l~~~~ 404 (717)
|+.|+||++.|+|||||||+.|.+.. -++++++.+++|+.+++++++.+.++++...
T Consensus 202 ~~da~y~~~iTltTvGyGD~~p~t~~~~~~~~l~r~~~~~~il~Gl~~~~~~~~~i~~~~~~~~ 265 (280)
T 3ukm_A 202 FLESFYFCFISLSTIGLGDYVPGEGYNQKFRELYKIGITCYLLLGLIAMLVVLETFCELHELKK 265 (280)
T ss_dssp HHHHHHHHHHHHTTCCCCSCCSSCSSSCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHTSHHHHH
T ss_pred hhhhhhheeeeeecccCCCCCCCCCcccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 67899999999999999999999874 4999999999999999999999998876543
No 77
>1lnq_A MTHK channels, potassium channel related protein; rossman fold, helix bundle, membrane protein; 3.30A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: c.2.1.9 d.286.1.1 f.14.1.1 PDB: 3rbz_A
Probab=97.97 E-value=5.2e-07 Score=96.46 Aligned_cols=56 Identities=14% Similarity=0.304 Sum_probs=50.0
Q ss_pred HHHHHHHHHHhhccccCCCCccCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 005042 348 LFYCLWFGLQNLSTLGQGLKTSTYIQEIIFSILIGIAGLVLLALLIGNMQTYLTSL 403 (717)
Q Consensus 348 Y~~slywal~tlttvGygd~~~~~~~E~~f~i~i~i~G~~lfa~lIg~~~~~l~~~ 403 (717)
|..|+||++.|+||+||||++|.+..+++++++++++|+++++++++.+.+.+...
T Consensus 46 ~~~a~y~~~~t~tTvGyGd~~p~t~~~r~~~~~~~~~g~~~~~~~~~~~~~~~~~~ 101 (336)
T 1lnq_A 46 WTVSLYWTFVTIATVGYGDYSPSTPLGMYFTVTLIVLGIGTFAVAVERLLEFLINR 101 (336)
T ss_dssp SSTTHHHHHHHHTTCCCSSCCCCCSSHHHHHTHHHHTTSTTTTTHHHHHTTTC---
T ss_pred HHHHHHHHHHHhhcccCCCCCCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34589999999999999999999999999999999999999999999999887654
No 78
>2kyh_A KVAP, voltage-gated potassium channel; ION channel, membrane protein; NMR {Aeropyrum pernix}
Probab=97.83 E-value=4.1e-05 Score=71.59 Aligned_cols=78 Identities=13% Similarity=0.193 Sum_probs=57.2
Q ss_pred HHHHHHHHHHHHHHhhhccccccccccCCccccccccchhHHHHHHHHHHHHHHHHhHhhhceeeEEcCCCcccCCCeEe
Q 005042 79 FWNRLFVFTCFISVSIDPLFFYLPFFDKENYCLGMDVQLAAAITTFRSILDCIYSCRIPFQFRTAYIAPSSRVFGRGELV 158 (717)
Q Consensus 79 ~W~~~~li~~i~~~~v~Pl~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~Di~f~~Di~l~F~tay~~~~s~~~~~G~lV 158 (717)
.|+.++.++.+++++++-+..+.+ .+......+..++.++-++|.+|.++++..+ +
T Consensus 22 ~f~~~i~~lil~sv~~v~~et~~~----------i~~~~~~~~~~id~~~~~iF~~Ey~lRl~~a---~----------- 77 (147)
T 2kyh_A 22 LVELGVSYAALLSVIVVVVEYTMQ----------LSGEYLVRLYLVDLILVIILWADYAYRAYKS---G----------- 77 (147)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHCC----------CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---T-----------
T ss_pred hHHHHHHHHHHHHHHHHHHHHhHh----------hchhHHHHHHHHHHHHHHHHHHHHHHHHHHC---C-----------
Confidence 478888887777777766553221 1223345677899999999999999999875 1
Q ss_pred eCHHHHHHHHHhhhhHHHhhhccchhhh
Q 005042 159 VDPALISRRYFRRLFLVDFLSVLPIPQL 186 (717)
Q Consensus 159 ~d~~~Ia~rYl~~~F~iDlls~lPl~~i 186 (717)
| .++|+++ =++|++|++|+...
T Consensus 78 -~----k~~f~~~-~iiDllailP~~~~ 99 (147)
T 2kyh_A 78 -D----PAGYVKK-TLYEIPALVPAGLL 99 (147)
T ss_dssp -C----HHHHHHH-STTTHHHHCCHHHH
T ss_pred -c----HHHHHHH-HHHHHHHHHHHHHH
Confidence 1 3578887 58999999998644
No 79
>1ors_C Potassium channel; voltage-dependent, voltage sensor, KVAP, FAB complex, membrane protein; 1.90A {Aeropyrum pernix} SCOP: f.14.1.1
Probab=97.38 E-value=0.00029 Score=64.62 Aligned_cols=80 Identities=11% Similarity=0.105 Sum_probs=58.0
Q ss_pred HHHHHHHHHHHHHHHhhhccccccccccCCccccccccchhHHHHHHHHHHHHHHHHhHhhhceeeEEcCCCcccCCCeE
Q 005042 78 LFWNRLFVFTCFISVSIDPLFFYLPFFDKENYCLGMDVQLAAAITTFRSILDCIYSCRIPFQFRTAYIAPSSRVFGRGEL 157 (717)
Q Consensus 78 ~~W~~~~li~~i~~~~v~Pl~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~Di~f~~Di~l~F~tay~~~~s~~~~~G~l 157 (717)
..++.+++++++++++..-+.-+ |. .+......+..++.++-++|.+|+++++..+ ++
T Consensus 6 ~~f~~~i~~lIlls~~~~~~et~-~~---------~~~~~~~~l~~~d~~~~~iFt~E~~lRl~~~---~~--------- 63 (132)
T 1ors_C 6 PLVELGVSYAALLSVIVVVVEYT-MQ---------LSGEYLVRLYLVDLILVIILWADYAYRAYKS---GD--------- 63 (132)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH-SC---------CCSHHHHHHHHHHHHHHHHHHHHHHHHHHHT---TS---------
T ss_pred HHHHHHHHHHHHHHHHHHHHHhc-hh---------hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHC---CC---------
Confidence 35778888888877777655522 11 1223455678899999999999999999864 11
Q ss_pred eeCHHHHHHHHHhhhhHHHhhhccchhhhh
Q 005042 158 VVDPALISRRYFRRLFLVDFLSVLPIPQLL 187 (717)
Q Consensus 158 V~d~~~Ia~rYl~~~F~iDlls~lPl~~i~ 187 (717)
.++|++ |=++|+++++|+....
T Consensus 64 -------~~~y~~-~niiDllailp~~~~~ 85 (132)
T 1ors_C 64 -------PAGYVK-KTLYEIPALVPAGLLA 85 (132)
T ss_dssp -------TTTTTT-TCGGGTGGGSCHHHHH
T ss_pred -------HHHHHH-HHHHHHHHHHHHHHHH
Confidence 247899 9999999999986443
No 80
>3rns_A Cupin 2 conserved barrel domain protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, unknown function; HET: MSE; 2.07A {Leptotrichia buccalis}
Probab=73.90 E-value=10 Score=37.10 Aligned_cols=68 Identities=12% Similarity=0.169 Sum_probs=52.8
Q ss_pred ceeEEecCCcEEEccCCCcceEEEEEeeEEEEEEecCCeeeeeeeeecCCCCeecHHhHhhhcCCCCCCCCCCcccEEEE
Q 005042 495 LKPSLCTEGTCVVREGDPVVEMLLIIRGSLESVTTDGGRTGFYNRGMLKEGDFCGEELLTWALDPKSVTNLPLSTRTVRA 574 (717)
Q Consensus 495 l~~~~~~~ge~Ii~eGd~~~~myfI~~G~v~v~~~~~g~e~~~~~~~l~~Gd~fGe~~l~~~l~~~~~~n~p~s~~tv~A 574 (717)
+....+.+|+.+-..-.+.+.+.+|++|.+++... |+ ...+++||++= +++. ....++|
T Consensus 39 ~~~~~~~~G~~~~~h~h~~~~~~~Vl~G~~~~~i~--~~-----~~~l~~Gd~~~-------~p~~-------~~H~~~a 97 (227)
T 3rns_A 39 ISLFSLAKDEEITAEAMLGNRYYYCFNGNGEIFIE--NN-----KKTISNGDFLE-------ITAN-------HNYSIEA 97 (227)
T ss_dssp EEEEEECTTCEEEECSCSSCEEEEEEESEEEEEES--SC-----EEEEETTEEEE-------ECSS-------CCEEEEE
T ss_pred EEEEEECCCCccCccccCCCEEEEEEeCEEEEEEC--CE-----EEEECCCCEEE-------ECCC-------CCEEEEE
Confidence 34557899999988878899999999999998763 33 36789998863 3222 4578899
Q ss_pred cceeEEEEE
Q 005042 575 LDEVEAFSL 583 (717)
Q Consensus 575 ~t~~el~~L 583 (717)
.+++.++.+
T Consensus 98 ~~~~~~l~i 106 (227)
T 3rns_A 98 RDNLKLIEI 106 (227)
T ss_dssp SSSEEEEEE
T ss_pred CCCcEEEEE
Confidence 999999977
No 81
>2ozj_A Cupin 2, conserved barrel; cupin superfamily protein, struct genomics, joint center for structural genomics, JCSG; HET: MSE; 1.60A {Desulfitobacterium hafniense}
Probab=72.25 E-value=12 Score=31.84 Aligned_cols=65 Identities=12% Similarity=0.100 Sum_probs=42.4
Q ss_pred EEecCCcEEEccCCCcceEEEEEeeEEEEEEecCCeeeeeeeeecCCCCeecHHhHhhhcCCCCCCCCCCcccEEEEcce
Q 005042 498 SLCTEGTCVVREGDPVVEMLLIIRGSLESVTTDGGRTGFYNRGMLKEGDFCGEELLTWALDPKSVTNLPLSTRTVRALDE 577 (717)
Q Consensus 498 ~~~~~ge~Ii~eGd~~~~myfI~~G~v~v~~~~~g~e~~~~~~~l~~Gd~fGe~~l~~~l~~~~~~n~p~s~~tv~A~t~ 577 (717)
..+.+|..+-.-..+..++++|++|.+++.. +++ ...+.+||.+= +++. ....+++.++
T Consensus 43 ~~~~~g~~~~~H~h~~~e~~~vl~G~~~~~i--~~~-----~~~l~~Gd~i~-------i~~~-------~~H~~~~~~~ 101 (114)
T 2ozj_A 43 FSFADGESVSEEEYFGDTLYLILQGEAVITF--DDQ-----KIDLVPEDVLM-------VPAH-------KIHAIAGKGR 101 (114)
T ss_dssp EEEETTSSCCCBCCSSCEEEEEEEEEEEEEE--TTE-----EEEECTTCEEE-------ECTT-------CCBEEEEEEE
T ss_pred EEECCCCccccEECCCCeEEEEEeCEEEEEE--CCE-----EEEecCCCEEE-------ECCC-------CcEEEEeCCC
Confidence 3456776654444567889999999998765 333 46789999873 2222 2345666677
Q ss_pred eEEEEE
Q 005042 578 VEAFSL 583 (717)
Q Consensus 578 ~el~~L 583 (717)
+.++.+
T Consensus 102 ~~~~~i 107 (114)
T 2ozj_A 102 FKMLQI 107 (114)
T ss_dssp EEEEEE
T ss_pred cEEEEE
Confidence 777654
No 82
>3fjs_A Uncharacterized protein with RMLC-like cupin fold; structural genomics, joint center for structural genomics, JCSG; HET: MSE; 1.90A {Ralstonia eutropha JMP134}
Probab=70.16 E-value=12 Score=32.20 Aligned_cols=66 Identities=17% Similarity=0.195 Sum_probs=46.4
Q ss_pred eeEEecCCcEEEccCCCcceEEEEEeeEEEEEEecCCeeeeeeeeecCCCCeecHHhHhhhcCCCCCCCCCCcccEEEEc
Q 005042 496 KPSLCTEGTCVVREGDPVVEMLLIIRGSLESVTTDGGRTGFYNRGMLKEGDFCGEELLTWALDPKSVTNLPLSTRTVRAL 575 (717)
Q Consensus 496 ~~~~~~~ge~Ii~eGd~~~~myfI~~G~v~v~~~~~g~e~~~~~~~l~~Gd~fGe~~l~~~l~~~~~~n~p~s~~tv~A~ 575 (717)
....+++|..+-.--.+..++++|++|.+++... ++ ...+++||.+= +++. ....+++.
T Consensus 39 ~~~~l~~G~~~~~H~H~~~e~~~Vl~G~~~~~i~--~~-----~~~l~~Gd~i~-------ip~~-------~~H~~~~~ 97 (114)
T 3fjs_A 39 MRMVLPAGKQVGSHSVAGPSTIQCLEGEVEIGVD--GA-----QRRLHQGDLLY-------LGAG-------AAHDVNAI 97 (114)
T ss_dssp EEEEECTTCEEEEECCSSCEEEEEEESCEEEEET--TE-----EEEECTTEEEE-------ECTT-------CCEEEEES
T ss_pred EEEEECCCCccCceeCCCcEEEEEEECEEEEEEC--CE-----EEEECCCCEEE-------ECCC-------CcEEEEeC
Confidence 3456788888766556677999999999988753 33 36789999873 3222 34567888
Q ss_pred ceeEEEE
Q 005042 576 DEVEAFS 582 (717)
Q Consensus 576 t~~el~~ 582 (717)
++++++.
T Consensus 98 ~~~~~~~ 104 (114)
T 3fjs_A 98 TNTSLLV 104 (114)
T ss_dssp SSEEEEE
T ss_pred CCcEEEE
Confidence 8877654
No 83
>2kxw_B Sodium channel protein type 2 subunit alpha; action potential, amino acid motifs, animals, autism, biomol brain chemistry; NMR {Rattus norvegicus}
Probab=65.98 E-value=5.3 Score=25.59 Aligned_cols=20 Identities=25% Similarity=0.270 Sum_probs=16.7
Q ss_pred hhhHHHHHHHHHHHHHHHhh
Q 005042 614 WRTWAACFIQATWRRKSQRK 633 (717)
Q Consensus 614 ~~~~~~~~~q~~~~~~~~r~ 633 (717)
-+++++.+||.+|+++..+.
T Consensus 4 ~Ee~aA~vIQrA~R~yl~~~ 23 (27)
T 2kxw_B 4 QEEVSAIVIQRAYRRYLLKQ 23 (27)
T ss_dssp HHHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHHHHHHHh
Confidence 36789999999999987653
No 84
>2l53_B CAM, voltage-gated sodium channel type V alpha isoform variant; calmodulin, IQ motif, complex, Ca-binding protein; NMR {Homo sapiens}
Probab=65.29 E-value=5.6 Score=26.31 Aligned_cols=22 Identities=23% Similarity=0.259 Sum_probs=17.8
Q ss_pred hhhhHHHHHHHHHHHHHHHhhH
Q 005042 613 QWRTWAACFIQATWRRKSQRKK 634 (717)
Q Consensus 613 ~~~~~~~~~~q~~~~~~~~r~~ 634 (717)
+-++|++.+||.+|+++.-|..
T Consensus 3 k~Ee~aA~vIQrA~R~yl~rr~ 24 (31)
T 2l53_B 3 GSEEVSAMVIQRAFRRHLLQRS 24 (31)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHh
Confidence 3467999999999999886543
No 85
>1yhf_A Hypothetical protein SPY1581; structural genomics, conserved hypothetical protein, PSI, PR structure initiative; 2.00A {Streptococcus pyogenes} SCOP: b.82.1.9
Probab=63.88 E-value=26 Score=29.55 Aligned_cols=67 Identities=15% Similarity=0.150 Sum_probs=44.3
Q ss_pred eeEEecCCcEEEccCCCcceEEEEEeeEEEEEEecCCeeeeeeeeecCCCCeecHHhHhhhcCCCCCCCCCCcccEEEEc
Q 005042 496 KPSLCTEGTCVVREGDPVVEMLLIIRGSLESVTTDGGRTGFYNRGMLKEGDFCGEELLTWALDPKSVTNLPLSTRTVRAL 575 (717)
Q Consensus 496 ~~~~~~~ge~Ii~eGd~~~~myfI~~G~v~v~~~~~g~e~~~~~~~l~~Gd~fGe~~l~~~l~~~~~~n~p~s~~tv~A~ 575 (717)
....+.+|..+-.--....++++|++|.+.+.. +++ ...+.+||.+= +.+. ....+.+.
T Consensus 43 ~~~~~~~g~~~~~H~H~~~e~~~vl~G~~~~~~--~~~-----~~~l~~Gd~~~-------ip~~-------~~H~~~~~ 101 (115)
T 1yhf_A 43 TVFSLDKGQEIGRHSSPGDAMVTILSGLAEITI--DQE-----TYRVAEGQTIV-------MPAG-------IPHALYAV 101 (115)
T ss_dssp EEEEECTTCEEEEECCSSEEEEEEEESEEEEEE--TTE-----EEEEETTCEEE-------ECTT-------SCEEEEES
T ss_pred EEEEECCCCccCCEECCCcEEEEEEeCEEEEEE--CCE-----EEEECCCCEEE-------ECCC-------CCEEEEEC
Confidence 344667887764444446799999999998765 233 35789999873 2222 33556777
Q ss_pred ceeEEEEE
Q 005042 576 DEVEAFSL 583 (717)
Q Consensus 576 t~~el~~L 583 (717)
++++++.+
T Consensus 102 ~~~~~~~v 109 (115)
T 1yhf_A 102 EAFQMLLV 109 (115)
T ss_dssp SCEEEEEE
T ss_pred CCceEEEE
Confidence 77777655
No 86
>3kg2_A Glutamate receptor 2; ION channel, membrane protein, cell membrane, glycoprotein, transport, membrane, postsynaptic cell membrane, editing; HET: ZK1 NAG BMA; 3.60A {Rattus norvegicus}
Probab=61.43 E-value=8.1 Score=45.24 Aligned_cols=55 Identities=20% Similarity=0.353 Sum_probs=45.1
Q ss_pred HHHHHHHHHHHhhccccCCCCccCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005042 347 KLFYCLWFGLQNLSTLGQGLKTSTYIQEIIFSILIGIAGLVLLALLIGNMQTYLTS 402 (717)
Q Consensus 347 ~Y~~slywal~tlttvGygd~~~~~~~E~~f~i~i~i~G~~lfa~lIg~~~~~l~~ 402 (717)
....++|+++.+++..| ++..|.....+++.++++++++++.+...+++.++|..
T Consensus 563 ~~~~~~~~~~~~l~~~g-~~~~p~~~~~R~~~~~w~~~~lil~~~Yta~L~s~Lt~ 617 (823)
T 3kg2_A 563 GIFNSLWFSLGAFMQQG-ADISPRSLSGRIVGGVWWFFTLIIISSYTANLAAFLTV 617 (823)
T ss_dssp HHHHHHHHTTTTSCC-------CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHhcC-CCcCCcchhhhhHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 45678999999998877 67789999999999999999999999999999999974
No 87
>2pfw_A Cupin 2, conserved barrel domain protein; cupin domain, struc genomics, joint center for structural genomics, JCSG; 1.90A {Shewanella frigidimarina}
Probab=59.96 E-value=36 Score=28.67 Aligned_cols=67 Identities=10% Similarity=0.054 Sum_probs=44.8
Q ss_pred eeEEecCCcEEEccCCCcceEEEEEeeEEEEEEecCCeeeeeeeeecCCCCeecHHhHhhhcCCCCCCCCCCcccEEEEc
Q 005042 496 KPSLCTEGTCVVREGDPVVEMLLIIRGSLESVTTDGGRTGFYNRGMLKEGDFCGEELLTWALDPKSVTNLPLSTRTVRAL 575 (717)
Q Consensus 496 ~~~~~~~ge~Ii~eGd~~~~myfI~~G~v~v~~~~~g~e~~~~~~~l~~Gd~fGe~~l~~~l~~~~~~n~p~s~~tv~A~ 575 (717)
....+.+|..+-.--....++++|++|.+++.. +++ ...+.+||.+= +.+. ....+.+.
T Consensus 37 ~~~~~~pg~~~~~H~H~~~e~~~vl~G~~~~~~--~~~-----~~~l~~Gd~~~-------ip~~-------~~H~~~~~ 95 (116)
T 2pfw_A 37 VKIWFDKGAEGYVHAHRHSQVSYVVEGEFHVNV--DGV-----IKVLTAGDSFF-------VPPH-------VDHGAVCP 95 (116)
T ss_dssp EEEEECTTEEEEEECCSSEEEEEEEEECEEEEE--TTE-----EEEECTTCEEE-------ECTT-------CCEEEEES
T ss_pred EEEEECCCCcCCcEECCcceEEEEEeeEEEEEE--CCE-----EEEeCCCCEEE-------ECcC-------CceeeEeC
Confidence 345677887654333446789999999998775 333 46789999863 2222 33557777
Q ss_pred ceeEEEEE
Q 005042 576 DEVEAFSL 583 (717)
Q Consensus 576 t~~el~~L 583 (717)
++++++.+
T Consensus 96 ~~~~~l~v 103 (116)
T 2pfw_A 96 TGGILIDT 103 (116)
T ss_dssp SCEEEEEE
T ss_pred CCcEEEEE
Confidence 78887766
No 88
>3lwc_A Uncharacterized protein; structural genomics, unknown function, joint center for STRU genomics, JCSG, protein structure initiative; HET: MSE; 1.40A {Rhizobium leguminosarum}
Probab=59.41 E-value=21 Score=31.09 Aligned_cols=45 Identities=16% Similarity=0.262 Sum_probs=33.2
Q ss_pred eEEecCCcEEEccCCCcceEEEEEeeEEEEEEecCCeeeeeeeeecCCCCeec
Q 005042 497 PSLCTEGTCVVREGDPVVEMLLIIRGSLESVTTDGGRTGFYNRGMLKEGDFCG 549 (717)
Q Consensus 497 ~~~~~~ge~Ii~eGd~~~~myfI~~G~v~v~~~~~g~e~~~~~~~l~~Gd~fG 549 (717)
...+.+|..+-.. ...+++++|++|++++.. +|+ ...+++||.+-
T Consensus 44 ~~~~~pG~~~~~H-~~~~E~~~Vl~G~~~~~~--~g~-----~~~l~~GD~v~ 88 (119)
T 3lwc_A 44 YGRYAPGQSLTET-MAVDDVMIVLEGRLSVST--DGE-----TVTAGPGEIVY 88 (119)
T ss_dssp EEEECTTCEEEEE-CSSEEEEEEEEEEEEEEE--TTE-----EEEECTTCEEE
T ss_pred EEEECCCCCcCcc-CCCCEEEEEEeCEEEEEE--CCE-----EEEECCCCEEE
Confidence 3456778765443 378899999999999876 344 35799999874
No 89
>4e2g_A Cupin 2 conserved barrel domain protein; MCSG, PSI-biology, structural genomics, GEBA, midwest center structural genomics; HET: MSE; 1.86A {Sphaerobacter thermophilus}
Probab=54.58 E-value=36 Score=29.17 Aligned_cols=47 Identities=17% Similarity=0.149 Sum_probs=34.2
Q ss_pred ceeEEecCCcEEEccCCCcceEEEEEeeEEEEEEecCCeeeeeeeeecCCCCee
Q 005042 495 LKPSLCTEGTCVVREGDPVVEMLLIIRGSLESVTTDGGRTGFYNRGMLKEGDFC 548 (717)
Q Consensus 495 l~~~~~~~ge~Ii~eGd~~~~myfI~~G~v~v~~~~~g~e~~~~~~~l~~Gd~f 548 (717)
+....+.+|..+-.--....++++|++|.+++... ++ ...+.+||.+
T Consensus 43 ~~~~~~~pg~~~~~H~H~~~e~~~vl~G~~~~~~~--~~-----~~~l~~Gd~~ 89 (126)
T 4e2g_A 43 LNWVRIEPNTEMPAHEHPHEQAGVMLEGTLELTIG--EE-----TRVLRPGMAY 89 (126)
T ss_dssp EEEEEECTTCEEEEECCSSEEEEEEEEECEEEEET--TE-----EEEECTTEEE
T ss_pred EEEEEECCCCcCCCccCCCceEEEEEEeEEEEEEC--CE-----EEEeCCCCEE
Confidence 34456788887655445568999999999988752 33 4678999986
No 90
>1yfu_A 3-hydroxyanthranilate-3,4-dioxygenase; cupin, oxidoreductase; 1.90A {Cupriavidus metallidurans} SCOP: b.82.1.20 PDB: 1yfw_A* 1yfx_A* 1yfy_A*
Probab=50.72 E-value=34 Score=32.11 Aligned_cols=59 Identities=24% Similarity=0.333 Sum_probs=39.4
Q ss_pred CcceEEEEEeeEEEEEEecCCeeeeeeeeecCCCCeecHHhHhhhcCCCCCCCCCCcccEEEEcc-eeEEEEEcHHH
Q 005042 512 PVVEMLLIIRGSLESVTTDGGRTGFYNRGMLKEGDFCGEELLTWALDPKSVTNLPLSTRTVRALD-EVEAFSLRAEE 587 (717)
Q Consensus 512 ~~~~myfI~~G~v~v~~~~~g~e~~~~~~~l~~Gd~fGe~~l~~~l~~~~~~n~p~s~~tv~A~t-~~el~~L~~~d 587 (717)
+.++++++++|.+.+...++|+.. -..+++||+|= +... -..+-++.+ ++..+.+.+..
T Consensus 54 ~~dE~FyvlkG~m~i~v~d~g~~~---~v~l~eGE~f~-------lP~g-------vpH~P~r~~~e~~~lviE~~r 113 (174)
T 1yfu_A 54 PLEEFFYQLRGNAYLNLWVDGRRE---RADLKEGDIFL-------LPPH-------VRHSPQRPEAGSACLVIERQR 113 (174)
T ss_dssp SSCEEEEEEESCEEEEEEETTEEE---EEEECTTCEEE-------ECTT-------CCEEEEBCCTTCEEEEEEECC
T ss_pred CCceEEEEEeeEEEEEEEcCCcee---eEEECCCCEEE-------eCCC-------CCcCccccCCCCEEEEEEeCC
Confidence 467999999999998887766432 46899999983 3222 223344455 77777766543
No 91
>3d0j_A Uncharacterized protein CA_C3497; beta-barrel, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.53A {Clostridium acetobutylicum atcc 824}
Probab=46.66 E-value=33 Score=31.02 Aligned_cols=63 Identities=8% Similarity=0.124 Sum_probs=40.5
Q ss_pred cCCCcceEEEEEeeEEEEEEecCC--eeeeeeeeecCCCCeecHHhHhhhcCCCCCCCCCCcccEEEEcceeEEEEEcHH
Q 005042 509 EGDPVVEMLLIIRGSLESVTTDGG--RTGFYNRGMLKEGDFCGEELLTWALDPKSVTNLPLSTRTVRALDEVEAFSLRAE 586 (717)
Q Consensus 509 eGd~~~~myfI~~G~v~v~~~~~g--~e~~~~~~~l~~Gd~fGe~~l~~~l~~~~~~n~p~s~~tv~A~t~~el~~L~~~ 586 (717)
.-+..|++++|++|.+.+...+++ .... ....+++|+++-- |+. -..+-.|.++|.++.+...
T Consensus 46 ~H~~tDE~Fivl~G~l~i~~rd~~~~~~~d-~~V~l~~Ge~yvV--------PkG------veH~p~a~~e~~vLLiEp~ 110 (140)
T 3d0j_A 46 IHHSTDEQFILSAGKAILITAEKENDKFNI-ELTLMEKGKVYNV--------PAE------CWFYSITQKDTKMMYVQDS 110 (140)
T ss_dssp EESSCCEEEEEEESCEEEEEEEEETTEEEE-EEEECCTTCCEEE--------CTT------CEEEEEECTTCEEEEEEES
T ss_pred cCCCCCeEEEEEecEEEEEEecCcCCCCcc-ceEEecCCCEEEe--------CCC------ccCcccCCCceEEEEEEeC
Confidence 335678999999999998865321 1000 1467899998842 221 2345567788888877654
No 92
>1o5u_A Novel thermotoga maritima enzyme TM1112; cupin, structural genomics center for structural genomics, JCSG, protein structure INI PSI; 1.83A {Thermotoga maritima} SCOP: b.82.1.8 PDB: 1lkn_A 2k9z_A
Probab=46.16 E-value=53 Score=27.62 Aligned_cols=47 Identities=17% Similarity=0.151 Sum_probs=34.1
Q ss_pred ceeEEecCCcEEEccCCCcceEEEEEeeEEEEEEecCCeeeeeeeeecCCCCeec
Q 005042 495 LKPSLCTEGTCVVREGDPVVEMLLIIRGSLESVTTDGGRTGFYNRGMLKEGDFCG 549 (717)
Q Consensus 495 l~~~~~~~ge~Ii~eGd~~~~myfI~~G~v~v~~~~~g~e~~~~~~~l~~Gd~fG 549 (717)
+....+.+|+.-.. ....++++|++|.+.+... +++ ...+++||.+-
T Consensus 33 ~~~~~~~pg~~~~h--H~~~E~~~Vl~G~~~~~i~-~g~-----~~~l~~GD~i~ 79 (101)
T 1o5u_A 33 WPIWEKEVSEFDWY--YDTNETCYILEGKVEVTTE-DGK-----KYVIEKGDLVT 79 (101)
T ss_dssp SCEEEECSEEEEEE--CSSCEEEEEEEEEEEEEET-TCC-----EEEEETTCEEE
T ss_pred EEEEEeCCCccccc--CCceEEEEEEeCEEEEEEC-CCC-----EEEECCCCEEE
Confidence 34566788876544 4578999999999988763 233 46799999874
No 93
>1zvf_A 3-hydroxyanthranilate 3,4-dioxygenase; jellyroll beta-barrel, oxidoreductase; 2.41A {Saccharomyces cerevisiae} SCOP: b.82.1.20
Probab=46.12 E-value=1.2e+02 Score=28.49 Aligned_cols=86 Identities=19% Similarity=0.211 Sum_probs=51.8
Q ss_pred HHHHHHHhhcee----EEecCCcEEEc-cCC----------CcceEEEEEeeEEEEEEecCC---eeeeeeeeecCCCCe
Q 005042 486 RLLDAICERLKP----SLCTEGTCVVR-EGD----------PVVEMLLIIRGSLESVTTDGG---RTGFYNRGMLKEGDF 547 (717)
Q Consensus 486 ~~l~~l~~~l~~----~~~~~ge~Ii~-eGd----------~~~~myfI~~G~v~v~~~~~g---~e~~~~~~~l~~Gd~ 547 (717)
+-+++....+++ +..-.+++++. -|. +.++++++++|.+.+-..++| .+ +.-..+++||+
T Consensus 12 ~wl~e~~~~~~PPV~Nk~v~~~~~~V~~vgGPn~r~D~H~~~~eE~Fy~lkG~m~l~v~d~g~~~~~--~~dv~i~eGdm 89 (176)
T 1zvf_A 12 KWLKENEGLLKPPVNNYCLHKGGFTVMIVGGPNERTDYHINPTPEWFYQKKGSMLLKVVDETDAEPK--FIDIIINEGDS 89 (176)
T ss_dssp HHHHHHGGGGSSSSCEEEEECSSEEEEEECSSBCCSCEEECSSCEEEEEEESCEEEEEEECSSSSCE--EEEEEECTTEE
T ss_pred HHHHHhHhhcCCCcCCEEEecCCEEEEEEcCCCcCCcCcCCCCceEEEEEeCEEEEEEEcCCCcccc--eeeEEECCCCE
Confidence 344555666666 44333565432 222 456999999999998877655 11 11468999999
Q ss_pred ecHHhHhhhcCCCCCCCCCCcccEEEEcceeEEEEEcHHH
Q 005042 548 CGEELLTWALDPKSVTNLPLSTRTVRALDEVEAFSLRAEE 587 (717)
Q Consensus 548 fGe~~l~~~l~~~~~~n~p~s~~tv~A~t~~el~~L~~~d 587 (717)
|= +.+. -..+-++-.++..+.+.+..
T Consensus 90 fl-------lP~g-------vpHsP~r~~e~v~lviErkR 115 (176)
T 1zvf_A 90 YL-------LPGN-------VPHSPVRFADTVGIVVEQDR 115 (176)
T ss_dssp EE-------ECTT-------CCEEEEECTTCEEEEEEECC
T ss_pred EE-------cCCC-------CCcCCcccCCcEEEEEEecC
Confidence 83 3322 22344445778888776543
No 94
>2gu9_A Tetracenomycin polyketide synthesis protein; X-RAY diffraction, cupin, immune system; 1.40A {Xanthomonas campestris} PDB: 2ilb_A 3h50_A
Probab=43.94 E-value=32 Score=28.53 Aligned_cols=47 Identities=15% Similarity=0.249 Sum_probs=33.2
Q ss_pred eeEEecCCcEEEcc--CCC-cceEEEEEeeEEEEEEecCCeeeeeeeeecCCCCeec
Q 005042 496 KPSLCTEGTCVVRE--GDP-VVEMLLIIRGSLESVTTDGGRTGFYNRGMLKEGDFCG 549 (717)
Q Consensus 496 ~~~~~~~ge~Ii~e--Gd~-~~~myfI~~G~v~v~~~~~g~e~~~~~~~l~~Gd~fG 549 (717)
....+.+|..+-.. -.. ..++++|++|.+++... ++ ...+++||.+=
T Consensus 24 ~~~~~~pg~~~~~h~~~H~~~~e~~~vl~G~~~~~~~--~~-----~~~l~~Gd~~~ 73 (113)
T 2gu9_A 24 AEMVIAPGDREGGPDNRHRGADQWLFVVDGAGEAIVD--GH-----TQALQAGSLIA 73 (113)
T ss_dssp EEEEECTTCEEECCCSSSCCCEEEEEEEECCEEEEET--TE-----EEEECTTEEEE
T ss_pred EEEEECCCCccCCcccccCCCcEEEEEEeCEEEEEEC--CE-----EEEeCCCCEEE
Confidence 34467888876543 334 67999999999987753 33 36789999873
No 95
>4axo_A EUTQ, ethanolamine utilization protein; structural protein, bacterial microcompartment, BMC; 1.00A {Clostridium difficile}
Probab=43.35 E-value=52 Score=30.12 Aligned_cols=52 Identities=17% Similarity=0.206 Sum_probs=34.5
Q ss_pred CcceEEEEEeeEEEEEEecCCeeeeeeeeecCCCCeecHHhHhhhcCCCCCCCCCCcccEEEEcceeEEEEEc
Q 005042 512 PVVEMLLIIRGSLESVTTDGGRTGFYNRGMLKEGDFCGEELLTWALDPKSVTNLPLSTRTVRALDEVEAFSLR 584 (717)
Q Consensus 512 ~~~~myfI~~G~v~v~~~~~g~e~~~~~~~l~~Gd~fGe~~l~~~l~~~~~~n~p~s~~tv~A~t~~el~~L~ 584 (717)
..+++++|++|.+++.. +|+ ...+++||.+= +... ...+..+.++|+++.+.
T Consensus 83 ~~eE~~yVLeG~~~l~i--~g~-----~~~l~~GD~i~-------iP~G-------~~h~~~n~~~a~~l~V~ 134 (151)
T 4axo_A 83 NYDEIDYVIDGTLDIII--DGR-----KVSASSGELIF-------IPKG-------SKIQFSVPDYARFIYVT 134 (151)
T ss_dssp SSEEEEEEEEEEEEEEE--TTE-----EEEEETTCEEE-------ECTT-------CEEEEEEEEEEEEEEEE
T ss_pred CCcEEEEEEEeEEEEEE--CCE-----EEEEcCCCEEE-------ECCC-------CEEEEEeCCCEEEEEEE
Confidence 46789999999999875 444 46799999873 2221 23344445777766553
No 96
>1v70_A Probable antibiotics synthesis protein; structural genomics, thermus thermophilus HB8, riken structu genomics/proteomics initiative, RSGI; 1.30A {Thermus thermophilus} SCOP: b.82.1.9 PDB: 2dct_A
Probab=42.34 E-value=39 Score=27.41 Aligned_cols=45 Identities=9% Similarity=0.020 Sum_probs=31.3
Q ss_pred eEEecCCcEEEccCCC-cceEEEEEeeEEEEEEecCCeeeeeeeeecCCCCee
Q 005042 497 PSLCTEGTCVVREGDP-VVEMLLIIRGSLESVTTDGGRTGFYNRGMLKEGDFC 548 (717)
Q Consensus 497 ~~~~~~ge~Ii~eGd~-~~~myfI~~G~v~v~~~~~g~e~~~~~~~l~~Gd~f 548 (717)
...+.+|..+-.--.. .+++++|++|.+.+... ++ ...+.+||.+
T Consensus 32 ~~~~~pg~~~~~H~H~~~~e~~~v~~G~~~~~~~--~~-----~~~l~~Gd~~ 77 (105)
T 1v70_A 32 LYALLPGQAQKVHVHEGSDKVYYALEGEVVVRVG--EE-----EALLAPGMAA 77 (105)
T ss_dssp EEEECTTCEEEEECCSSCEEEEEEEESCEEEEET--TE-----EEEECTTCEE
T ss_pred EEEECCCCcCCccCCCCCcEEEEEEeCEEEEEEC--CE-----EEEeCCCCEE
Confidence 4467788776433333 36799999999987653 33 4678999987
No 97
>3rns_A Cupin 2 conserved barrel domain protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, unknown function; HET: MSE; 2.07A {Leptotrichia buccalis}
Probab=42.04 E-value=49 Score=32.13 Aligned_cols=68 Identities=13% Similarity=0.196 Sum_probs=48.0
Q ss_pred ceeEEecCCcEEEccCCCcceEEEEEeeEEEEEEecCCeeeeeeeeecCCCCeecHHhHhhhcCCCCCCCCCCcccEEEE
Q 005042 495 LKPSLCTEGTCVVREGDPVVEMLLIIRGSLESVTTDGGRTGFYNRGMLKEGDFCGEELLTWALDPKSVTNLPLSTRTVRA 574 (717)
Q Consensus 495 l~~~~~~~ge~Ii~eGd~~~~myfI~~G~v~v~~~~~g~e~~~~~~~l~~Gd~fGe~~l~~~l~~~~~~n~p~s~~tv~A 574 (717)
+....+.+|+.+-..-.+.+++++|++|.+++... |+ ...+++||.+= +++. ....+.+
T Consensus 155 ~~~~~~~~G~~~~~H~H~~~e~~~Vl~G~~~~~i~--g~-----~~~l~~Gd~i~-------ip~~-------~~H~~~~ 213 (227)
T 3rns_A 155 MTIMSFWKGESLDPHKAPGDALVTVLDGEGKYYVD--GK-----PFIVKKGESAV-------LPAN-------IPHAVEA 213 (227)
T ss_dssp EEEEEECTTCEEEEECCSSEEEEEEEEEEEEEEET--TE-----EEEEETTEEEE-------ECTT-------SCEEEEC
T ss_pred EEEEEECCCCccCCEECCCcEEEEEEeEEEEEEEC--CE-----EEEECCCCEEE-------ECCC-------CcEEEEe
Confidence 34567899998866556678899999999987753 33 36789999863 2221 3456778
Q ss_pred -cceeEEEEE
Q 005042 575 -LDEVEAFSL 583 (717)
Q Consensus 575 -~t~~el~~L 583 (717)
.++++++.+
T Consensus 214 ~~~~~~~ll~ 223 (227)
T 3rns_A 214 ETENFKMLLI 223 (227)
T ss_dssp CSSCEEEEEE
T ss_pred CCCCEEEEEE
Confidence 888877654
No 98
>3d82_A Cupin 2, conserved barrel domain protein; structural genomics, joint center for structural genomics; 2.05A {Shewanella frigidimarina ncimb 400}
Probab=40.62 E-value=49 Score=26.87 Aligned_cols=51 Identities=14% Similarity=0.255 Sum_probs=34.6
Q ss_pred cceEEEEEeeEEEEEEecCCeeeeeeeeecCCCCeecHHhHhhhcCCCCCCCCCCcccEEEEcceeEEEEEc
Q 005042 513 VVEMLLIIRGSLESVTTDGGRTGFYNRGMLKEGDFCGEELLTWALDPKSVTNLPLSTRTVRALDEVEAFSLR 584 (717)
Q Consensus 513 ~~~myfI~~G~v~v~~~~~g~e~~~~~~~l~~Gd~fGe~~l~~~l~~~~~~n~p~s~~tv~A~t~~el~~L~ 584 (717)
..++++|++|.+.+... ++ ...+.+||.+- +.+. ....+.+.+++.++.++
T Consensus 50 ~~e~~~v~~G~~~~~~~--~~-----~~~l~~Gd~~~-------ip~~-------~~H~~~~~~~~~~l~i~ 100 (102)
T 3d82_A 50 TDEVFIVMEGTLQIAFR--DQ-----NITLQAGEMYV-------IPKG-------VEHKPMAKEECKIMIIE 100 (102)
T ss_dssp CCEEEEEEESEEEEECS--SC-----EEEEETTEEEE-------ECTT-------CCBEEEEEEEEEEEEEE
T ss_pred CcEEEEEEeCEEEEEEC--CE-----EEEEcCCCEEE-------ECCC-------CeEeeEcCCCCEEEEEE
Confidence 37899999999987653 22 35688998763 3322 23455666788888775
No 99
>3h8u_A Uncharacterized conserved protein with double-STR beta-helix domain; YP_001338853.1; HET: 2PE; 1.80A {Klebsiella pneumoniae subsp}
Probab=39.92 E-value=37 Score=29.10 Aligned_cols=48 Identities=21% Similarity=0.218 Sum_probs=32.6
Q ss_pred ceeEEecCCcEEEccCCC-cceEEEEEeeEEEEEEecCCeeeeeeeeecCCCCee
Q 005042 495 LKPSLCTEGTCVVREGDP-VVEMLLIIRGSLESVTTDGGRTGFYNRGMLKEGDFC 548 (717)
Q Consensus 495 l~~~~~~~ge~Ii~eGd~-~~~myfI~~G~v~v~~~~~g~e~~~~~~~l~~Gd~f 548 (717)
+....+.||..+-.--.. ..++++|++|.+++... +++ ...+++||++
T Consensus 41 ~~~~~~~pg~~~~~H~H~~~~e~~~Vl~G~~~~~~~-~~~-----~~~l~~Gd~~ 89 (125)
T 3h8u_A 41 VVVWHAHPGQEIASHVHPHGQDTWTVISGEAEYHQG-NGI-----VTHLKAGDIA 89 (125)
T ss_dssp EEEEEECTTCEECCC-CTTCEEEEEEEECEEEEECS-TTC-----EEEEETTEEE
T ss_pred EEEEEECCCCcCCcccCCCCeEEEEEEEeEEEEEEC-CCe-----EEEeCCCCEE
Confidence 344567888776544444 36899999999987642 333 3678999976
No 100
>2bnm_A Epoxidase; oxidoreductase, cupin, HTH, cation-dependant, zinc, fosfomycin; 1.7A {Streptomyces wedmorensis} SCOP: a.35.1.3 b.82.1.10 PDB: 1zz7_A 1zz8_A 1zz9_A 1zzb_A 1zz6_A 1zzc_A 2bnn_A 2bno_A 3scf_A 3scg_A 3sch_A
Probab=39.14 E-value=63 Score=30.23 Aligned_cols=49 Identities=14% Similarity=0.097 Sum_probs=32.5
Q ss_pred EEecCCcEEE---ccCCCcceEEEEEeeEEEEEEecCCeeeeeeeeecCCCCeec
Q 005042 498 SLCTEGTCVV---REGDPVVEMLLIIRGSLESVTTDGGRTGFYNRGMLKEGDFCG 549 (717)
Q Consensus 498 ~~~~~ge~Ii---~eGd~~~~myfI~~G~v~v~~~~~g~e~~~~~~~l~~Gd~fG 549 (717)
..+.||...- .--.+..++++|++|.+++...+++... ...+++||.+-
T Consensus 122 ~~~~pg~~~~~~~~h~h~~~E~~~Vl~G~~~~~~~~~~~~~---~~~l~~GD~~~ 173 (198)
T 2bnm_A 122 VDVLTDNPDDAKFNSGHAGNEFLFVLEGEIHMKWGDKENPK---EALLPTGASMF 173 (198)
T ss_dssp EEECCCCGGGCCCCCCCSSCEEEEEEESCEEEEESCTTSCE---EEEECTTCEEE
T ss_pred EEEcCCCCCcccccccCCCeEEEEEEeeeEEEEECCcCCcc---cEEECCCCEEE
Confidence 3567776543 1223457999999999998875432221 46899999873
No 101
>3bcw_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; 1.60A {Bordetella bronchiseptica RB50}
Probab=37.54 E-value=25 Score=30.97 Aligned_cols=44 Identities=25% Similarity=0.251 Sum_probs=30.9
Q ss_pred EecCCcEEEccCCCcceEEEEEeeEEEEEEecCCeeeeeeeeecCCCCeec
Q 005042 499 LCTEGTCVVREGDPVVEMLLIIRGSLESVTTDGGRTGFYNRGMLKEGDFCG 549 (717)
Q Consensus 499 ~~~~ge~Ii~eGd~~~~myfI~~G~v~v~~~~~g~e~~~~~~~l~~Gd~fG 549 (717)
...+|..-.+..+ .+++++|++|.+.+... +|+ ...+++||.+-
T Consensus 55 ~~~pG~~~~~~~~-~~E~~~Vl~G~~~l~~~-~g~-----~~~l~~GD~~~ 98 (123)
T 3bcw_A 55 ESTSGSFQSNTTG-YIEYCHIIEGEARLVDP-DGT-----VHAVKAGDAFI 98 (123)
T ss_dssp EEEEEEEECCCTT-EEEEEEEEEEEEEEECT-TCC-----EEEEETTCEEE
T ss_pred EECCCceeeEcCC-CcEEEEEEEEEEEEEEC-CCe-----EEEECCCCEEE
Confidence 4566666554332 38999999999988753 344 35789999984
No 102
>1dgw_A Canavalin; duplicated swiss-roll beta barrels, loops with alpha helices merohedral/ hemihedral twinning, plant protein; 1.70A {Canavalia ensiformis} SCOP: b.82.1.2 PDB: 1dgr_A 1cau_A 1cav_A 1caw_A 1cax_A
Probab=37.32 E-value=37 Score=31.75 Aligned_cols=52 Identities=13% Similarity=0.108 Sum_probs=35.6
Q ss_pred ceeEEecCCcEEEccCCCcceEEEEEeeEEEEEEecCCeeeeeeeeecCCCCeec
Q 005042 495 LKPSLCTEGTCVVREGDPVVEMLLIIRGSLESVTTDGGRTGFYNRGMLKEGDFCG 549 (717)
Q Consensus 495 l~~~~~~~ge~Ii~eGd~~~~myfI~~G~v~v~~~~~g~e~~~~~~~l~~Gd~fG 549 (717)
+....+.||.....--..++++++|++|++++...+.+... ...+++||.+-
T Consensus 43 ~~~~~l~pg~~~~pHh~~a~E~~yVl~G~~~v~v~~~~~~~---~~~l~~GDv~~ 94 (178)
T 1dgw_A 43 VLEYCSKPNTLLLPHHSDSDLLVLVLEGQAILVLVNPDGRD---TYKLDQGDAIK 94 (178)
T ss_dssp EEEEEECTTEEEEEEEESSEEEEEEEESEEEEEEEETTEEE---EEEEETTEEEE
T ss_pred EEEEEecCCcEecCcCCCCCEEEEEEeEEEEEEEEeCCCcE---EEEECCCCEEE
Confidence 44557788877644433468999999999987754332222 46899999874
No 103
>3es4_A Uncharacterized protein DUF861 with A RMLC-like C; 17741406, protein of unknown function (DUF861) with A RMLC-L fold; HET: MSE; 1.64A {Agrobacterium tumefaciens str}
Probab=34.65 E-value=41 Score=29.39 Aligned_cols=44 Identities=9% Similarity=0.159 Sum_probs=31.3
Q ss_pred EecCCcEEEccCCCcceEEEEEeeEEEEEEecCCeeeeeeeeecCCCCeec
Q 005042 499 LCTEGTCVVREGDPVVEMLLIIRGSLESVTTDGGRTGFYNRGMLKEGDFCG 549 (717)
Q Consensus 499 ~~~~ge~Ii~eGd~~~~myfI~~G~v~v~~~~~g~e~~~~~~~l~~Gd~fG 549 (717)
..+||..-... +..++++.|++|.+.+... +|. ...+++||.+-
T Consensus 48 e~tPG~~~~~~-~~~~E~~~iLeG~~~lt~d-dG~-----~~~l~aGD~~~ 91 (116)
T 3es4_A 48 MAEPGIYNYAG-RDLEETFVVVEGEALYSQA-DAD-----PVKIGPGSIVS 91 (116)
T ss_dssp EECSEEEEECC-CSEEEEEEEEECCEEEEET-TCC-----CEEECTTEEEE
T ss_pred ecCCceeECee-CCCcEEEEEEEeEEEEEeC-CCe-----EEEECCCCEEE
Confidence 45666665544 3345999999999988754 444 46789999885
No 104
>2i45_A Hypothetical protein; neisseria meningitidis cupin domain, structural genomics, PS protein structure initiative; 2.50A {Neisseria meningitidis}
Probab=34.13 E-value=45 Score=27.71 Aligned_cols=68 Identities=12% Similarity=0.152 Sum_probs=40.4
Q ss_pred ecCCcEEEccCCCcceEEEEEeeEEEEEEecCCeeeeeeeeecCCCCeecHHhHhhhcCCCCCCCCCCcccEEEEcceeE
Q 005042 500 CTEGTCVVREGDPVVEMLLIIRGSLESVTTDGGRTGFYNRGMLKEGDFCGEELLTWALDPKSVTNLPLSTRTVRALDEVE 579 (717)
Q Consensus 500 ~~~ge~Ii~eGd~~~~myfI~~G~v~v~~~~~g~e~~~~~~~l~~Gd~fGe~~l~~~l~~~~~~n~p~s~~tv~A~t~~e 579 (717)
..+|+...+.-+...++++|++|.+++...+ ++ ...+++||.+= +++. ....+.+.+++.
T Consensus 35 ~~~g~~~~H~H~~~~E~~~Vl~G~~~~~~~~-~~-----~~~l~~Gd~~~-------ip~~-------~~H~~~~~~~~~ 94 (107)
T 2i45_A 35 KLLGDYGWHTHGYSDKVLFAVEGDMAVDFAD-GG-----SMTIREGEMAV-------VPKS-------VSHRPRSENGCS 94 (107)
T ss_dssp EEEEECCCBCC--CCEEEEESSSCEEEEETT-SC-----EEEECTTEEEE-------ECTT-------CCEEEEEEEEEE
T ss_pred ECCCCCcceeCCCCCEEEEEEeCEEEEEECC-Cc-----EEEECCCCEEE-------ECCC-------CcEeeEeCCCeE
Confidence 3455533233332389999999999877643 23 46789999873 3222 223444557788
Q ss_pred EEEEcHHH
Q 005042 580 AFSLRAEE 587 (717)
Q Consensus 580 l~~L~~~d 587 (717)
++.+....
T Consensus 95 ~l~i~~~~ 102 (107)
T 2i45_A 95 LVLIELSD 102 (107)
T ss_dssp EEEEECC-
T ss_pred EEEEECCC
Confidence 88776543
No 105
>2qnk_A 3-hydroxyanthranilate 3,4-dioxygenase; bicupin fold, cupin barrel, extradiol dioxygenase, metalloen trytophan catabolism, NAD+ synthesis; HET: MSE; 1.60A {Homo sapiens} PDB: 3fe5_A
Probab=33.65 E-value=88 Score=31.63 Aligned_cols=60 Identities=8% Similarity=0.220 Sum_probs=41.8
Q ss_pred CCcceEEEEEeeEEEEEEecCCeeeeeeeeecCCCCeecHHhHhhhcCCCCCCCCCCcccEEEEcceeEEEEEcHHH
Q 005042 511 DPVVEMLLIIRGSLESVTTDGGRTGFYNRGMLKEGDFCGEELLTWALDPKSVTNLPLSTRTVRALDEVEAFSLRAEE 587 (717)
Q Consensus 511 d~~~~myfI~~G~v~v~~~~~g~e~~~~~~~l~~Gd~fGe~~l~~~l~~~~~~n~p~s~~tv~A~t~~el~~L~~~d 587 (717)
+..++++++++|.+.+-..++|+-. -..+++|++|= +.+. -..+=++-++|..+.|.+..
T Consensus 49 ~~~dE~FyqlkG~m~l~~~d~g~~~---~V~i~eGemfl-------lP~g-------v~HsP~r~~et~gLviE~~R 108 (286)
T 2qnk_A 49 EEGEEVFYQLEGDMVLRVLEQGKHR---DVVIRQGEIFL-------LPAR-------VPHSPQRFANTVGLVVERRR 108 (286)
T ss_dssp CSSCEEEEEEESCEEEEEEETTEEE---EEEECTTEEEE-------ECTT-------CCEEEEECTTCEEEEEEECC
T ss_pred CCCCeEEEEEeCeEEEEEEeCCcee---eEEECCCeEEE-------eCCC-------CCcCCcccCCeEEEEEeecC
Confidence 4578999999999998877766422 36789999983 3222 23445557788888887543
No 106
>3ibm_A Cupin 2, conserved barrel domain protein; cupin 2 family, metal-binding site, beta barrel, PSI-2, NYSG structural genomics; 2.00A {Halorhodospira halophila SL1}
Probab=32.45 E-value=49 Score=30.49 Aligned_cols=46 Identities=20% Similarity=0.148 Sum_probs=31.9
Q ss_pred eEEecCCcEEEccCCCcceEEEEEeeEEEEEEecCCeeeeeeeeecCCCCeec
Q 005042 497 PSLCTEGTCVVREGDPVVEMLLIIRGSLESVTTDGGRTGFYNRGMLKEGDFCG 549 (717)
Q Consensus 497 ~~~~~~ge~Ii~eGd~~~~myfI~~G~v~v~~~~~g~e~~~~~~~l~~Gd~fG 549 (717)
...+.||..+-.--....++++|++|.+.+... ++ ...+.+||++=
T Consensus 60 ~~~l~pG~~~~~H~H~~~E~~~Vl~G~~~~~i~--~~-----~~~l~~Gd~i~ 105 (167)
T 3ibm_A 60 YFEVEPGGYTTLERHEHTHVVMVVRGHAEVVLD--DR-----VEPLTPLDCVY 105 (167)
T ss_dssp EEEECTTCBCCCBBCSSCEEEEEEESEEEEEET--TE-----EEEECTTCEEE
T ss_pred EEEECCCCCCCCccCCCcEEEEEEeCEEEEEEC--CE-----EEEECCCCEEE
Confidence 445667765543334578999999999987653 33 46789999873
No 107
>2q30_A Uncharacterized protein; double-stranded beta-helix fold, structural genomics, joint for structural genomics, JCSG; HET: MSE; 1.94A {Desulfovibrio desulfuricans subsp}
Probab=31.60 E-value=1.4e+02 Score=24.39 Aligned_cols=67 Identities=13% Similarity=0.128 Sum_probs=40.7
Q ss_pred eEEecCCcEEEccCCCc-ceE-EEEEeeEEEEEEecCCeeeeeeeeecCCCCeecHHhHhhhcCCCCCCCCCCcccEEEE
Q 005042 497 PSLCTEGTCVVREGDPV-VEM-LLIIRGSLESVTTDGGRTGFYNRGMLKEGDFCGEELLTWALDPKSVTNLPLSTRTVRA 574 (717)
Q Consensus 497 ~~~~~~ge~Ii~eGd~~-~~m-yfI~~G~v~v~~~~~g~e~~~~~~~l~~Gd~fGe~~l~~~l~~~~~~n~p~s~~tv~A 574 (717)
...+.+|..+-.--... .++ ++|++|.+++...+ ++ ...+.+||.+- +.+. ....+.+
T Consensus 37 ~~~~~~g~~~~~H~H~~~~e~~~~vl~G~~~~~~~~-~~-----~~~l~~Gd~~~-------ip~~-------~~H~~~~ 96 (110)
T 2q30_A 37 SFTFKAGQELPVHSHNIEGELNIVVLEGEGEFVGDG-DA-----VIPAPRGAVLV-------APIS-------TPHGVRA 96 (110)
T ss_dssp EEEECTTCEEEEECCSSSCEEEEEEEESCEEEECGG-GC-----EEEECTTEEEE-------EETT-------SCEEEEE
T ss_pred EEEECCCCcCCcccCCCCccEEEEEEeCEEEEEeCC-CE-----EEEECCCCEEE-------eCCC-------CcEEEEE
Confidence 34567887764433332 466 89999999876532 23 36789999763 2221 2345667
Q ss_pred cceeEEEEE
Q 005042 575 LDEVEAFSL 583 (717)
Q Consensus 575 ~t~~el~~L 583 (717)
.+++.++.+
T Consensus 97 ~~~~~~l~~ 105 (110)
T 2q30_A 97 VTDMKVLVT 105 (110)
T ss_dssp SSSEEEEEE
T ss_pred cCCcEEEEE
Confidence 777765543
No 108
>2fqp_A Hypothetical protein BP2299; double-stranded beta-helix fold, structural genomics, joint for structural genomics, JCSG; HET: 1PE; 1.80A {Bordetella pertussis tohama I}
Probab=31.30 E-value=27 Score=28.72 Aligned_cols=48 Identities=15% Similarity=0.068 Sum_probs=30.9
Q ss_pred eEEecCCcEEEccCCCc-ceEEEEEeeEEEEEEecCCeeeeeeeeecCCCCeec
Q 005042 497 PSLCTEGTCVVREGDPV-VEMLLIIRGSLESVTTDGGRTGFYNRGMLKEGDFCG 549 (717)
Q Consensus 497 ~~~~~~ge~Ii~eGd~~-~~myfI~~G~v~v~~~~~g~e~~~~~~~l~~Gd~fG 549 (717)
...++||...-.--.+. .++++|++|.+++...++.+ ...+.+||.+-
T Consensus 22 ~~~~~Pg~~~~~H~H~~~~e~~~Vl~G~~~~~~~~g~~-----~~~l~~Gd~~~ 70 (97)
T 2fqp_A 22 EWRFPPGGETGWHRHSMDYVVVPMTTGPLLLETPEGSV-----TSQLTRGVSYT 70 (97)
T ss_dssp EEEECTTCBCCSEECCSCEEEEESSCEEEEEEETTEEE-----EEEECTTCCEE
T ss_pred EEEECCCCCCCCEECCCCcEEEEEeecEEEEEeCCCCE-----EEEEcCCCEEE
Confidence 44667776542222233 35999999999877543212 46799999873
No 109
>4b29_A Dimethylsulfoniopropionate lyase; hydrolase, dimethylsulfide, sulphur cycle; 1.72A {Roseovarius nubinhibens ism}
Probab=30.60 E-value=69 Score=31.15 Aligned_cols=45 Identities=13% Similarity=-0.013 Sum_probs=29.7
Q ss_pred EecCCcEEEccCCCcceEEEEEeeEEEEEEecCCeeeeeeeeecCCCCeec
Q 005042 499 LCTEGTCVVREGDPVVEMLLIIRGSLESVTTDGGRTGFYNRGMLKEGDFCG 549 (717)
Q Consensus 499 ~~~~ge~Ii~eGd~~~~myfI~~G~v~v~~~~~g~e~~~~~~~l~~Gd~fG 549 (717)
.+.||...=.--.+.+++|+|++|.++....++ + ...+++||.+=
T Consensus 138 ~l~PG~~yP~HsHp~EEiy~VLsG~~e~~v~~g-~-----~~~l~pGd~v~ 182 (217)
T 4b29_A 138 YWGPGLDYGWHEHLPEELYSVVSGRALFHLRNA-P-----DLMLEPGQTRF 182 (217)
T ss_dssp EECSSCEEEEEECSSEEEEEEEEECEEEEETTS-C-----CEEECTTCEEE
T ss_pred EECCCCcCCCCCCCCceEEEEEeCCEEEEECCC-C-----EEecCCCCEEE
Confidence 344444432223467899999999998776433 3 46789999873
No 110
>2o1q_A Putative acetyl/propionyl-COA carboxylase, alpha; putative acetylacetone dioxygenase, structural genomics; HET: MSE PG4; 1.50A {Methylibium petroleiphilum} SCOP: b.82.1.21
Probab=29.68 E-value=64 Score=28.99 Aligned_cols=50 Identities=10% Similarity=0.126 Sum_probs=34.2
Q ss_pred ceeEEecCCcEEEccCCCcceEEEEEeeEEEEEEecCCeeeeeeeeecCCCCeec
Q 005042 495 LKPSLCTEGTCVVREGDPVVEMLLIIRGSLESVTTDGGRTGFYNRGMLKEGDFCG 549 (717)
Q Consensus 495 l~~~~~~~ge~Ii~eGd~~~~myfI~~G~v~v~~~~~g~e~~~~~~~l~~Gd~fG 549 (717)
+....++||..+-.-..+..+.++|++|..+. . .|.... -..+++||++=
T Consensus 46 ~~~~~~~pG~~~p~H~H~~~ee~~VL~G~~~~--~-~g~~~~--~~~~~~Gd~~~ 95 (145)
T 2o1q_A 46 TAIFDCPAGSSFAAHVHVGPGEYFLTKGKMDV--R-GGKAAG--GDTAIAPGYGY 95 (145)
T ss_dssp EEEEEECTTEEECCEEESSCEEEEEEEEEEEE--T-TCGGGT--SEEEESSEEEE
T ss_pred EEEEEECCCCCCCccCCCCCEEEEEEEeEEEE--c-CCCEec--ceEeCCCEEEE
Confidence 45677899998877666678889999999973 2 222110 14677888864
No 111
>2q1z_B Anti-sigma factor CHRR, transcriptional activator; ECF sigma factor, cupin fold, zinc bindin transcription factor; 2.40A {Rhodobacter sphaeroides} PDB: 2z2s_B
Probab=28.76 E-value=80 Score=29.95 Aligned_cols=65 Identities=18% Similarity=0.197 Sum_probs=46.5
Q ss_pred hceeEEecCCcEEEccCCCcceEEEEEeeEEEEEEecCCeeeeeeeeecCCCCeecHHhHhhhcCCCCCCCCCCcccEEE
Q 005042 494 RLKPSLCTEGTCVVREGDPVVEMLLIIRGSLESVTTDGGRTGFYNRGMLKEGDFCGEELLTWALDPKSVTNLPLSTRTVR 573 (717)
Q Consensus 494 ~l~~~~~~~ge~Ii~eGd~~~~myfI~~G~v~v~~~~~g~e~~~~~~~l~~Gd~fGe~~l~~~l~~~~~~n~p~s~~tv~ 573 (717)
.+....+.+|..+-.-.....++.+|++|... ++ ...+.+||++= .++. ...+..
T Consensus 126 ~v~l~~~~pG~~~p~H~H~g~E~~~VL~G~f~----de-------~~~~~~Gd~~~-------~p~g-------~~H~p~ 180 (195)
T 2q1z_B 126 IARLLWIPGGQAVPDHGHRGLELTLVLQGAFR----DE-------TDRFGAGDIEI-------ADQE-------LEHTPV 180 (195)
T ss_dssp EEEEEEECTTCBCCCCCCSSCEEEEEEESEEE----CS-------SSEEETTCEEE-------ECSS-------CCCCCE
T ss_pred EEEEEEECCCCCCCCcCCCCeEEEEEEEEEEE----CC-------cEEECCCeEEE-------eCcC-------CccCCE
Confidence 45677899999998888889999999999965 22 24678888863 2222 334455
Q ss_pred E--cceeEEEEE
Q 005042 574 A--LDEVEAFSL 583 (717)
Q Consensus 574 A--~t~~el~~L 583 (717)
+ .++|.++..
T Consensus 181 a~~~~gc~~l~~ 192 (195)
T 2q1z_B 181 AERGLDCICLAA 192 (195)
T ss_dssp ECSSSCEEEEEE
T ss_pred eCCCCCEEEEEE
Confidence 5 778888764
No 112
>1fi2_A Oxalate oxidase, germin; beta-jellyroll, oxidoreductase; 1.60A {Hordeum vulgare} SCOP: b.82.1.2 PDB: 2et1_A 2ete_A* 2et7_A
Probab=28.66 E-value=87 Score=29.65 Aligned_cols=53 Identities=11% Similarity=0.133 Sum_probs=34.6
Q ss_pred ceeEEecCCcEEEccCCC-cceEEEEEeeEEEEEEecCC---eeeeeeeeecCCCCeec
Q 005042 495 LKPSLCTEGTCVVREGDP-VVEMLLIIRGSLESVTTDGG---RTGFYNRGMLKEGDFCG 549 (717)
Q Consensus 495 l~~~~~~~ge~Ii~eGd~-~~~myfI~~G~v~v~~~~~g---~e~~~~~~~l~~Gd~fG 549 (717)
+....+.+|...-.--.+ .+++++|++|.+++...+++ .+.. ...+++||.+-
T Consensus 74 ~~~~~l~pg~~~~~H~H~~~~E~~~Vl~G~~~v~~~~~~~~~~~~~--~~~l~~GD~~~ 130 (201)
T 1fi2_A 74 MNRVDFAPGGTNPPHIHPRATEIGMVMKGELLVGILGSLDSGNKLY--SRVVRAGETFV 130 (201)
T ss_dssp EEEEEECTTCEEEEEECTTCCEEEEEEESEEEEEEECCGGGTTCEE--EEEEETTCEEE
T ss_pred EEEEEECCCCCCCCeECCCCCEEEEEEeCEEEEEEEcCCCCCCeEE--EEEECCCCEEE
Confidence 344567888765332233 57999999999998764432 2211 36799999874
No 113
>2b8m_A Hypothetical protein MJ0764; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; 1.70A {Methanocaldococcus jannaschii} SCOP: b.82.1.18
Probab=28.58 E-value=52 Score=27.77 Aligned_cols=44 Identities=18% Similarity=0.264 Sum_probs=28.7
Q ss_pred EEecCCcEEEccCCCcceEEEEEeeEEEEEEecCCeeeeeeee-ecCCCCee
Q 005042 498 SLCTEGTCVVREGDPVVEMLLIIRGSLESVTTDGGRTGFYNRG-MLKEGDFC 548 (717)
Q Consensus 498 ~~~~~ge~Ii~eGd~~~~myfI~~G~v~v~~~~~g~e~~~~~~-~l~~Gd~f 548 (717)
..+.+|..+-.--....++++|++|.+++... ++ .. .+.+||.+
T Consensus 32 ~~~~pg~~~~~H~H~~~e~~~Vl~G~~~~~i~--~~-----~~~~l~~Gd~i 76 (117)
T 2b8m_A 32 IVLPRGEQMPKHYSNSYVHLIIIKGEMTLTLE--DQ-----EPHNYKEGNIV 76 (117)
T ss_dssp EEEETTCBCCCEECSSCEEEEEEESEEEEEET--TS-----CCEEEETTCEE
T ss_pred EEECCCCcCCCEeCCCcEEEEEEeCEEEEEEC--CE-----EEEEeCCCCEE
Confidence 34566655422223456899999999987753 22 24 78899986
No 114
>3es1_A Cupin 2, conserved barrel domain protein; YP_001165807.1; HET: MSE; 1.91A {Novosphingobium aromaticivorans dsm 12ORGANISM_TAXID}
Probab=28.33 E-value=52 Score=30.80 Aligned_cols=48 Identities=13% Similarity=0.248 Sum_probs=32.3
Q ss_pred ceeEEecCCcEEEccCCCcceEEEEEeeEEEEEEecCCeeeeeeeeecCCCCee
Q 005042 495 LKPSLCTEGTCVVREGDPVVEMLLIIRGSLESVTTDGGRTGFYNRGMLKEGDFC 548 (717)
Q Consensus 495 l~~~~~~~ge~Ii~eGd~~~~myfI~~G~v~v~~~~~g~e~~~~~~~l~~Gd~f 548 (717)
+....+.||...-.--....+..+|++|++++...+ |+ ...+++||.+
T Consensus 81 ~~~v~l~PG~~~~~H~H~~eE~~~VLeGel~l~ld~-ge-----~~~L~~GDsi 128 (172)
T 3es1_A 81 IRVVDMLPGKESPMHRTNSIDYGIVLEGEIELELDD-GA-----KRTVRQGGII 128 (172)
T ss_dssp EEEEEECTTCBCCCBCCSEEEEEEEEESCEEEECGG-GC-----EEEECTTCEE
T ss_pred EEEEEECCCCCCCCeecCceEEEEEEeCEEEEEECC-Ce-----EEEECCCCEE
Confidence 344567777643322334567889999999987543 33 3679999998
No 115
>2opk_A Hypothetical protein; putative mannose-6-phosphate isomerase, structural genomics, center for structural genomics, JCSG; 2.10A {Ralstonia eutropha}
Probab=28.15 E-value=57 Score=27.72 Aligned_cols=34 Identities=18% Similarity=0.341 Sum_probs=24.8
Q ss_pred CCcceEEEEEeeEEEEEEecCCeeeeeeeeecCCCCeec
Q 005042 511 DPVVEMLLIIRGSLESVTTDGGRTGFYNRGMLKEGDFCG 549 (717)
Q Consensus 511 d~~~~myfI~~G~v~v~~~~~g~e~~~~~~~l~~Gd~fG 549 (717)
...+++++|++|.+++...++.. ...+++||.+-
T Consensus 51 ~~~~E~~~Vl~G~~~l~~~~~~~-----~~~l~~Gd~i~ 84 (112)
T 2opk_A 51 SPQDEWVMVVSGSAGIECEGDTA-----PRVMRPGDWLH 84 (112)
T ss_dssp CSSEEEEEEEESCEEEEETTCSS-----CEEECTTEEEE
T ss_pred CCccEEEEEEeCeEEEEECCEEE-----EEEECCCCEEE
Confidence 45679999999999887643310 15789999874
No 116
>3jzv_A Uncharacterized protein RRU_A2000; structural genomics, cupin-2 fold, unknown function, PSI-2, structure initiative; HET: MSE; 2.30A {Rhodospirillum rubrum}
Probab=27.58 E-value=47 Score=30.70 Aligned_cols=45 Identities=13% Similarity=0.121 Sum_probs=31.0
Q ss_pred EEecCCcEEEccCCCcceEEEEEeeEEEEEEecCCeeeeeeeeecCCCCeec
Q 005042 498 SLCTEGTCVVREGDPVVEMLLIIRGSLESVTTDGGRTGFYNRGMLKEGDFCG 549 (717)
Q Consensus 498 ~~~~~ge~Ii~eGd~~~~myfI~~G~v~v~~~~~g~e~~~~~~~l~~Gd~fG 549 (717)
..+.||..+-.--....++++|++|.+++.. +++ ...+.+||++=
T Consensus 58 ~~l~pG~~~~~H~H~~~E~~~Vl~G~~~~~v--~g~-----~~~l~~GD~i~ 102 (166)
T 3jzv_A 58 FEVGPGGHSTLERHQHAHGVMILKGRGHAMV--GRA-----VSAVAPYDLVT 102 (166)
T ss_dssp EEEEEEEECCCBBCSSCEEEEEEEECEEEEE--TTE-----EEEECTTCEEE
T ss_pred EEECCCCccCceeCCCcEEEEEEeCEEEEEE--CCE-----EEEeCCCCEEE
Confidence 3556776654333456789999999998765 333 46789999873
No 117
>3kgz_A Cupin 2 conserved barrel domain protein; metalloprotein, structural genomics, PSI-2, protein structur initiative; 1.85A {Rhodopseudomonas palustris}
Probab=27.50 E-value=48 Score=30.30 Aligned_cols=44 Identities=23% Similarity=0.289 Sum_probs=30.2
Q ss_pred EEecCCcEEEccCCCcceEEEEEeeEEEEEEecCCeeeeeeeeecCCCCee
Q 005042 498 SLCTEGTCVVREGDPVVEMLLIIRGSLESVTTDGGRTGFYNRGMLKEGDFC 548 (717)
Q Consensus 498 ~~~~~ge~Ii~eGd~~~~myfI~~G~v~v~~~~~g~e~~~~~~~l~~Gd~f 548 (717)
..+.||..+-..-....++++|++|.+++.. +++ ...+.+||++
T Consensus 49 ~~l~pG~~~~~H~H~~~E~~~Vl~G~~~v~v--~g~-----~~~l~~Gd~i 92 (156)
T 3kgz_A 49 FEVDEGGYSTLERHAHVHAVMIHRGHGQCLV--GET-----ISDVAQGDLV 92 (156)
T ss_dssp EEEEEEEECCCBBCSSCEEEEEEEEEEEEEE--TTE-----EEEEETTCEE
T ss_pred EEECCCCccCceeCCCcEEEEEEeCEEEEEE--CCE-----EEEeCCCCEE
Confidence 3456666553333456789999999998875 333 4678899987
No 118
>4i4a_A Similar to unknown protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; HET: MSE; 1.35A {Photorhabdus luminescens subsp}
Probab=27.27 E-value=68 Score=27.42 Aligned_cols=79 Identities=13% Similarity=0.107 Sum_probs=46.9
Q ss_pred eEEecCCcEEEccCCCcceEEEEEeeEEEEEEecCCeeeeeeeeecCCCCeecHHhHhhhcCCCCCCCCCCcccEEEEc-
Q 005042 497 PSLCTEGTCVVREGDPVVEMLLIIRGSLESVTTDGGRTGFYNRGMLKEGDFCGEELLTWALDPKSVTNLPLSTRTVRAL- 575 (717)
Q Consensus 497 ~~~~~~ge~Ii~eGd~~~~myfI~~G~v~v~~~~~g~e~~~~~~~l~~Gd~fGe~~l~~~l~~~~~~n~p~s~~tv~A~- 575 (717)
...+.+|...-.--....++++|++|.+++.. +++ ...+++||.+= +.+. ....+.+.
T Consensus 38 ~~~~~pg~~~~~H~H~~~Ei~~v~~G~~~~~i--~~~-----~~~l~~Gd~~~-------i~~~-------~~H~~~~~~ 96 (128)
T 4i4a_A 38 WCIVRPETKSFRHSHNEYELFIVIQGNAIIRI--NDE-----DFPVTKGDLII-------IPLD-------SEHHVINNN 96 (128)
T ss_dssp EEEECTTEECCCBCCSSEEEEEEEESEEEEEE--TTE-----EEEEETTCEEE-------ECTT-------CCEEEEECS
T ss_pred EEEECCCCccCCEecCCeEEEEEEeCEEEEEE--CCE-----EEEECCCcEEE-------ECCC-------CcEEeEeCC
Confidence 34566776443333456789999999998776 333 46789999873 2222 12334443
Q ss_pred -ceeE--EEEEcHHHHHHHHHhcH
Q 005042 576 -DEVE--AFSLRAEELKFVASQFR 596 (717)
Q Consensus 576 -t~~e--l~~L~~~df~~ll~~~P 596 (717)
++++ ++.++.+-+..++.+.+
T Consensus 97 ~~~~~~~~i~f~~~~~~~~~~~~~ 120 (128)
T 4i4a_A 97 QEDFHFYTIWWDKESTLNFLTRLE 120 (128)
T ss_dssp SSCEEEEEEEECHHHHHHHHHHHH
T ss_pred CCCEEEEEEEECHHHHHHHHHhcc
Confidence 4444 45567776666665533
No 119
>2f4p_A Hypothetical protein TM1010; double-stranded beta-helix fold, structural genomics, joint for structural genomics, JCSG; HET: UNL; 1.90A {Thermotoga maritima} SCOP: b.82.1.9
Probab=27.13 E-value=85 Score=28.00 Aligned_cols=47 Identities=19% Similarity=0.271 Sum_probs=31.4
Q ss_pred eEEecCCcEEEccCCCcceEEEEEeeEEEEEEecCCeeeeeeeeecCCCCeec
Q 005042 497 PSLCTEGTCVVREGDPVVEMLLIIRGSLESVTTDGGRTGFYNRGMLKEGDFCG 549 (717)
Q Consensus 497 ~~~~~~ge~Ii~eGd~~~~myfI~~G~v~v~~~~~g~e~~~~~~~l~~Gd~fG 549 (717)
...+.+|..+-.---...++++|++|.+.+...+ ++ ...+.+||.+-
T Consensus 52 ~~~~~pg~~~~~H~H~~~E~~~Vl~G~~~~~~~~--~~----~~~l~~Gd~i~ 98 (147)
T 2f4p_A 52 DVVFEPGARTHWHSHPGGQILIVTRGKGFYQERG--KP----ARILKKGDVVE 98 (147)
T ss_dssp EEEECTTCEECSEECTTCEEEEEEEEEEEEEETT--SC----CEEEETTCEEE
T ss_pred EEEECCCCccCceECCCceEEEEEeCEEEEEECC--EE----EEEECCCCEEE
Confidence 4456777765333334578999999999877532 21 15688999873
No 120
>4e2q_A Ureidoglycine aminohydrolase; BI-cupin, manganese binding, endoplasmic RET hydrolase; 2.50A {Arabidopsis thaliana} PDB: 4e2s_A
Probab=26.47 E-value=1.1e+02 Score=30.81 Aligned_cols=69 Identities=9% Similarity=0.170 Sum_probs=44.9
Q ss_pred eEEecCCcEEEccCCCcceEEEEEeeEEEEEEecCCeeeeeeeeecCCCCeecHHhHhhhcCCCCCCCCCCcccEEEEcc
Q 005042 497 PSLCTEGTCVVREGDPVVEMLLIIRGSLESVTTDGGRTGFYNRGMLKEGDFCGEELLTWALDPKSVTNLPLSTRTVRALD 576 (717)
Q Consensus 497 ~~~~~~ge~Ii~eGd~~~~myfI~~G~v~v~~~~~g~e~~~~~~~l~~Gd~fGe~~l~~~l~~~~~~n~p~s~~tv~A~t 576 (717)
...+.||..--......+++.||++|++++...+ |+ ...+++||++= +.+. ...+++..+
T Consensus 74 lv~l~PGg~s~~~~h~~EEfiyVleG~l~l~l~~-g~-----~~~L~~Gds~y-------~p~~-------~~H~~~N~~ 133 (266)
T 4e2q_A 74 LAKMKEMSSSGLPPQDIERLIFVVEGAVTLTNTS-SS-----SKKLTVDSYAY-------LPPN-------FHHSLDCVE 133 (266)
T ss_dssp EEEECSSEECCCCCTTEEEEEEEEEECEEEEC---CC-----CEEECTTEEEE-------ECTT-------CCCEEEESS
T ss_pred EEEECcCCcCCCCCCCCeEEEEEEEEEEEEEECC-Cc-----EEEEcCCCEEE-------ECCC-------CCEEEEeCC
Confidence 4567887764223345679999999999887532 33 35789999873 2222 234555568
Q ss_pred eeEEEEEcH
Q 005042 577 EVEAFSLRA 585 (717)
Q Consensus 577 ~~el~~L~~ 585 (717)
+++++.+.+
T Consensus 134 ~Ar~l~V~k 142 (266)
T 4e2q_A 134 SATLVVFER 142 (266)
T ss_dssp CEEEEEEEE
T ss_pred CEEEEEEEe
Confidence 888888854
No 121
>1o4t_A Putative oxalate decarboxylase; double-stranded beta-helix fold, structural genomics, joint for structural genomics, JCSG; 1.95A {Thermotoga maritima} SCOP: b.82.1.9
Probab=26.31 E-value=63 Score=28.26 Aligned_cols=45 Identities=22% Similarity=0.270 Sum_probs=31.1
Q ss_pred eEEecCCcEEEccCCC-cceEEEEEeeEEEEEEecCCeeeeeeeeecCCCCee
Q 005042 497 PSLCTEGTCVVREGDP-VVEMLLIIRGSLESVTTDGGRTGFYNRGMLKEGDFC 548 (717)
Q Consensus 497 ~~~~~~ge~Ii~eGd~-~~~myfI~~G~v~v~~~~~g~e~~~~~~~l~~Gd~f 548 (717)
...++||..+-.---. ..++++|++|.+++... ++ ...+.+||.+
T Consensus 61 ~~~~~pg~~~~~H~H~~~~E~~~Vl~G~~~~~i~--~~-----~~~l~~Gd~i 106 (133)
T 1o4t_A 61 RMKLPPGSSVGLHKHEGEFEIYYILLGEGVFHDN--GK-----DVPIKAGDVC 106 (133)
T ss_dssp EEEECTTCEEEEEECCSEEEEEEEEESEEEEEET--TE-----EEEEETTEEE
T ss_pred EEEECCCCccCceECCCccEEEEEEeCEEEEEEC--CE-----EEEeCCCcEE
Confidence 4567888765332233 46899999999987653 33 4678999987
No 122
>1vj2_A Novel manganese-containing cupin TM1459; structural genomics, joint for structural genomics, JCSG; 1.65A {Thermotoga maritima} SCOP: b.82.1.10
Probab=26.28 E-value=60 Score=28.02 Aligned_cols=44 Identities=16% Similarity=0.315 Sum_probs=29.7
Q ss_pred EEecCCcEEEccCCCcceEEEEEeeEEEEEEecCCeeeeeeeeecCCCCee
Q 005042 498 SLCTEGTCVVREGDPVVEMLLIIRGSLESVTTDGGRTGFYNRGMLKEGDFC 548 (717)
Q Consensus 498 ~~~~~ge~Ii~eGd~~~~myfI~~G~v~v~~~~~g~e~~~~~~~l~~Gd~f 548 (717)
..+.||..+-.--....++++|++|.+++... ++ ...+.+||++
T Consensus 53 ~~~~pg~~~~~H~H~~~e~~~Vl~G~~~~~i~--~~-----~~~l~~Gd~i 96 (126)
T 1vj2_A 53 FTVEPGGLIDRHSHPWEHEIFVLKGKLTVLKE--QG-----EETVEEGFYI 96 (126)
T ss_dssp EEEEEEEEEEEECCSSCEEEEEEESEEEEECS--SC-----EEEEETTEEE
T ss_pred EEECCCCcCCceeCCCcEEEEEEEeEEEEEEC--CE-----EEEECCCCEE
Confidence 34566665533334467999999999987653 33 3578889887
No 123
>1sfn_A Conserved hypothetical protein; structural genomics, nysgxrc target T1583, PSI, protein STRU initiative; 2.46A {Deinococcus radiodurans} SCOP: b.82.1.11
Probab=26.11 E-value=1.6e+02 Score=28.73 Aligned_cols=65 Identities=12% Similarity=0.201 Sum_probs=42.1
Q ss_pred eEEecCCcEEEccCCCcceEEEEEeeEEEEEEecCCeeeeeeeeecCCCCeecHHhHhhhcCCCCCCCCCCcccEEEEcc
Q 005042 497 PSLCTEGTCVVREGDPVVEMLLIIRGSLESVTTDGGRTGFYNRGMLKEGDFCGEELLTWALDPKSVTNLPLSTRTVRALD 576 (717)
Q Consensus 497 ~~~~~~ge~Ii~eGd~~~~myfI~~G~v~v~~~~~g~e~~~~~~~l~~Gd~fGe~~l~~~l~~~~~~n~p~s~~tv~A~t 576 (717)
...++||...-..- .+++.+|++|.+++... ++ ...|++||++- ++.. ....+++.+
T Consensus 54 ~~~l~Pg~~~~~~~--~ee~~~Vl~G~~~~~~~--~~-----~~~l~~Gd~~~-------~p~~-------~~H~~~n~~ 110 (246)
T 1sfn_A 54 TAEMPAGAQATESV--YQRFAFVLSGEVDVAVG--GE-----TRTLREYDYVY-------LPAG-------EKHMLTAKT 110 (246)
T ss_dssp EEEECTTCEEECCS--SEEEEEEEEEEEEEECS--SC-----EEEECTTEEEE-------ECTT-------CCCEEEEEE
T ss_pred EEEECCCCcCCCCc--eeEEEEEEECEEEEEEC--CE-----EEEECCCCEEE-------ECCC-------CCEEEEeCC
Confidence 34678887654442 77899999999988753 33 46799999874 2221 223344447
Q ss_pred eeEEEEEc
Q 005042 577 EVEAFSLR 584 (717)
Q Consensus 577 ~~el~~L~ 584 (717)
+++++.+.
T Consensus 111 ~~~~l~v~ 118 (246)
T 1sfn_A 111 DARVSVFE 118 (246)
T ss_dssp EEEEEEEE
T ss_pred CEEEEEEE
Confidence 78777664
No 124
>1y9q_A Transcriptional regulator, HTH_3 family; transcriptional regulaator, strucutral genomics, protein structure initiative, PSI; 1.90A {Vibrio cholerae} SCOP: a.35.1.8 b.82.1.15
Probab=25.57 E-value=93 Score=28.90 Aligned_cols=44 Identities=11% Similarity=0.167 Sum_probs=30.8
Q ss_pred EEecCCcEEEc--cCCCcceEEEEEeeEEEEEEecCCeeeeeeeeecCCCCee
Q 005042 498 SLCTEGTCVVR--EGDPVVEMLLIIRGSLESVTTDGGRTGFYNRGMLKEGDFC 548 (717)
Q Consensus 498 ~~~~~ge~Ii~--eGd~~~~myfI~~G~v~v~~~~~g~e~~~~~~~l~~Gd~f 548 (717)
..+.||...-. -.....++++|++|.+++.. +++ ...+.+||.+
T Consensus 109 ~~~~pg~~~~~~~H~h~~~E~~~Vl~G~~~~~~--~~~-----~~~l~~GD~i 154 (192)
T 1y9q_A 109 ITLLDHHQQMSSPHALGVIEYIHVLEGIMKVFF--DEQ-----WHELQQGEHI 154 (192)
T ss_dssp EEECTTCEEEECCCSTTCEEEEEEEESCEEEEE--TTE-----EEEECTTCEE
T ss_pred EEECCCCCccCCCCCCCCEEEEEEEEeEEEEEE--CCE-----EEEeCCCCEE
Confidence 45677776542 12335799999999998765 333 4679999987
No 125
>1lr5_A Auxin binding protein 1; beta jellyroll, double stranded beta helix, germin-like PROT protein binding; HET: NAG BMA MAN; 1.90A {Zea mays} SCOP: b.82.1.2 PDB: 1lrh_A*
Probab=24.56 E-value=64 Score=29.23 Aligned_cols=50 Identities=6% Similarity=-0.000 Sum_probs=31.9
Q ss_pred eEEecCCcEEEccCCCcceEEEEEeeEEEEEEecCCe-----eeeeeeeecCCCCeec
Q 005042 497 PSLCTEGTCVVREGDPVVEMLLIIRGSLESVTTDGGR-----TGFYNRGMLKEGDFCG 549 (717)
Q Consensus 497 ~~~~~~ge~Ii~eGd~~~~myfI~~G~v~v~~~~~g~-----e~~~~~~~l~~Gd~fG 549 (717)
...+.+|..+-.--....++++|++|.+.+...++++ .. ...+.+||++=
T Consensus 45 ~~~~~pg~~~~~H~H~~~E~~~Vl~G~~~~~~~~~~~~~~~~~~---~~~l~~Gd~i~ 99 (163)
T 1lr5_A 45 LQTISPGQRTPIHRHSCEEVFTVLKGKGTLLMGSSSLKYPGQPQ---EIPFFQNTTFS 99 (163)
T ss_dssp EEEECTTCBCCEEEESSCEEEEEEECCEEEEECCSSSSSCCSCE---EEEECTTEEEE
T ss_pred EEEECCCCcCCCeECCCCeEEEEEeCEEEEEECCccccccCccE---EEEeCCCCEEE
Confidence 3456777654222224567999999999888755221 11 46789999863
No 126
>2pyt_A Ethanolamine utilization protein EUTQ; structural genomics, joint center for structural genomics, J protein structure initiative; 1.90A {Salmonella typhimurium LT2} SCOP: b.82.1.24
Probab=23.72 E-value=71 Score=28.29 Aligned_cols=44 Identities=16% Similarity=0.072 Sum_probs=30.8
Q ss_pred eEEecCCcEEEccCCCcceEEEEEeeEEEEEEecCCeeeeeeeeecCCCCeec
Q 005042 497 PSLCTEGTCVVREGDPVVEMLLIIRGSLESVTTDGGRTGFYNRGMLKEGDFCG 549 (717)
Q Consensus 497 ~~~~~~ge~Ii~eGd~~~~myfI~~G~v~v~~~~~g~e~~~~~~~l~~Gd~fG 549 (717)
...+.||..-.. ...+++++|++|.+++... |+ ...+++||.+-
T Consensus 61 ~~~~~pG~~~~h--~~~~E~~~VLeG~~~l~~~--g~-----~~~l~~GD~i~ 104 (133)
T 2pyt_A 61 FMQWDNAFFPWT--LNYDEIDMVLEGELHVRHE--GE-----TMIAKAGDVMF 104 (133)
T ss_dssp EEEEEEEEEEEE--CSSEEEEEEEEEEEEEEET--TE-----EEEEETTCEEE
T ss_pred EEEECCCCcccc--CCCCEEEEEEECEEEEEEC--CE-----EEEECCCcEEE
Confidence 345677743222 2468999999999987753 44 35799999874
No 127
>3i7d_A Sugar phosphate isomerase; YP_168127.1, structural genomics, JO center for structural genomics, JCSG, protein structure INI PSI-2; 2.30A {Ruegeria pomeroyi dss-3}
Probab=23.70 E-value=59 Score=29.73 Aligned_cols=46 Identities=15% Similarity=0.103 Sum_probs=30.6
Q ss_pred eEEecCCcEEE--ccCCCcceEEEEEeeEEEEEEecCCeeeeeeeeecCCCCeec
Q 005042 497 PSLCTEGTCVV--REGDPVVEMLLIIRGSLESVTTDGGRTGFYNRGMLKEGDFCG 549 (717)
Q Consensus 497 ~~~~~~ge~Ii--~eGd~~~~myfI~~G~v~v~~~~~g~e~~~~~~~l~~Gd~fG 549 (717)
...+.+|.... +.-+..+++++|++|.+++... ++ ...+++||.+-
T Consensus 47 ~~~l~pG~~~~~~H~H~~~eE~~~Vl~G~~~~~~~--~~-----~~~l~~GD~i~ 94 (163)
T 3i7d_A 47 LVRLEPGAKSSLRHYHMEQDEFVMVTEGALVLVDD--QG-----EHPMVPGDCAA 94 (163)
T ss_dssp EEEECTTCBSSSSEEESSCCEEEEEEESCEEEEET--TE-----EEEECTTCEEE
T ss_pred EEEECCCCcCCCCccCCCCcEEEEEEECEEEEEEC--CE-----EEEeCCCCEEE
Confidence 45667777542 2222236999999999988753 33 36789999864
No 128
>1sfn_A Conserved hypothetical protein; structural genomics, nysgxrc target T1583, PSI, protein STRU initiative; 2.46A {Deinococcus radiodurans} SCOP: b.82.1.11
Probab=22.69 E-value=81 Score=30.98 Aligned_cols=49 Identities=14% Similarity=0.028 Sum_probs=36.0
Q ss_pred hceeEEecCCcEEEc-cCCCcceEEEEEeeEEEEEEecCCeeeeeeeeecCCCCeec
Q 005042 494 RLKPSLCTEGTCVVR-EGDPVVEMLLIIRGSLESVTTDGGRTGFYNRGMLKEGDFCG 549 (717)
Q Consensus 494 ~l~~~~~~~ge~Ii~-eGd~~~~myfI~~G~v~v~~~~~g~e~~~~~~~l~~Gd~fG 549 (717)
.+....++||..+=. +-....+.++|++|++.+.. +|+ ...+++||++-
T Consensus 166 ~~~~~tl~PG~~~~~~~~h~~ee~~~vLeG~~~~~~--~~~-----~~~l~~GD~~~ 215 (246)
T 1sfn_A 166 MVSTMSFAPGASLPYAEVHYMEHGLLMLEGEGLYKL--EEN-----YYPVTAGDIIW 215 (246)
T ss_dssp EEEEEEECTTCBCSSCBCCSSCEEEEEEECEEEEEE--TTE-----EEEEETTCEEE
T ss_pred EEEEEEECCCCccCcccCCCceEEEEEEECEEEEEE--CCE-----EEEcCCCCEEE
Confidence 345668899987753 44556789999999997664 344 46899999874
No 129
>3h7j_A Bacilysin biosynthesis protein BACB; YWFC, bacilysin synthesis, anticapsin synthesis, BI-Cu double stranded beta helix, antibiotic biosynthesis; HET: PPY; 1.87A {Bacillus subtilis} PDB: 3h7y_A* 3h9a_A*
Probab=22.36 E-value=93 Score=30.39 Aligned_cols=47 Identities=15% Similarity=0.121 Sum_probs=34.7
Q ss_pred ceeEEecCCcEEEccCCCcceEEEEEeeEEEEEEecCCeeeeeeeeecCCCCee
Q 005042 495 LKPSLCTEGTCVVREGDPVVEMLLIIRGSLESVTTDGGRTGFYNRGMLKEGDFC 548 (717)
Q Consensus 495 l~~~~~~~ge~Ii~eGd~~~~myfI~~G~v~v~~~~~g~e~~~~~~~l~~Gd~f 548 (717)
+....+.+|..+-.---+..++++|++|.+++.. +|+ ...+.+||.+
T Consensus 36 ~~~~~~~pg~~~~~H~H~~~e~~~Vl~G~~~~~~--~~~-----~~~l~~Gd~i 82 (243)
T 3h7j_A 36 VLMSYVPPHTNVEPHQHKEVQIGMVVSGELMMTV--GDV-----TRKMTALESA 82 (243)
T ss_dssp EEEEEECTTEEEEEECCSSEEEEEEEESEEEEEE--TTE-----EEEEETTTCE
T ss_pred EEEEEECCCCccCCEECCCcEEEEEEEeEEEEEE--CCE-----EEEECCCCEE
Confidence 4445688888776555667899999999998876 333 4678999854
No 130
>2vqa_A SLL1358 protein, MNCA; periplasmic binding protein, metal-binding protein, cupin, BI-cupin, oxalate decarboxylase; 2.95A {Synechocystis SP}
Probab=22.28 E-value=1.1e+02 Score=31.62 Aligned_cols=51 Identities=12% Similarity=0.066 Sum_probs=34.6
Q ss_pred eeEEecCCcEEEccCCC-cceEEEEEeeEEEEEEec-CCeeeeeeeeecCCCCeec
Q 005042 496 KPSLCTEGTCVVREGDP-VVEMLLIIRGSLESVTTD-GGRTGFYNRGMLKEGDFCG 549 (717)
Q Consensus 496 ~~~~~~~ge~Ii~eGd~-~~~myfI~~G~v~v~~~~-~g~e~~~~~~~l~~Gd~fG 549 (717)
....+.||...-.--.. .+++++|++|++++...+ +|+.. ...+++||++=
T Consensus 55 ~~~~l~pg~~~~~H~H~~~~E~~yVl~G~~~~~v~~~~g~~~---~~~l~~GD~~~ 107 (361)
T 2vqa_A 55 VYMSLEPGAIRELHWHANAAEWAYVMEGRTRITLTSPEGKVE---IADVDKGGLWY 107 (361)
T ss_dssp EEEEECTTCEEEEEECTTCCEEEEEEESEEEEEEECTTSCEE---EEEEETTEEEE
T ss_pred EEEEEcCCCCCCceeCCCCCEEEEEEEeEEEEEEEeCCCcEE---EEEEcCCCEEE
Confidence 34567788765332234 789999999999988744 33222 46799999873
No 131
>2d40_A Z3393, putative gentisate 1,2-dioxygenase; gentisic acid, bicupin, tetramer, montreal- bacterial structural genomics initiative, BSGI; 2.41A {Escherichia coli} SCOP: b.82.1.23
Probab=21.89 E-value=1.6e+02 Score=30.73 Aligned_cols=72 Identities=11% Similarity=0.108 Sum_probs=47.2
Q ss_pred eEEecCCcEEEccCCCcceEEEEEeeEEEEEEecCCeeeeeeeeecCCCCeecHHhHhhhcCCCCCCCCCCcccEEEEcc
Q 005042 497 PSLCTEGTCVVREGDPVVEMLLIIRGSLESVTTDGGRTGFYNRGMLKEGDFCGEELLTWALDPKSVTNLPLSTRTVRALD 576 (717)
Q Consensus 497 ~~~~~~ge~Ii~eGd~~~~myfI~~G~v~v~~~~~g~e~~~~~~~l~~Gd~fGe~~l~~~l~~~~~~n~p~s~~tv~A~t 576 (717)
...+++|...-.--.+..++|+|++|..++.. +|+ ...+++||.|---.. ....+.+.+
T Consensus 272 ~~~l~pG~~~~~H~h~~~ev~~v~~G~g~~~v--~~~-----~~~~~~GD~~~vP~~--------------~~H~~~n~e 330 (354)
T 2d40_A 272 LQLLPKGFASRVARTTDSTIYHVVEGSGQVII--GNE-----TFSFSAKDIFVVPTW--------------HGVSFQTTQ 330 (354)
T ss_dssp EEEECTTCBCCCBEESSCEEEEEEEEEEEEEE--TTE-----EEEEETTCEEEECTT--------------CCEEEEEEE
T ss_pred EEEECCCCCCCceecCCcEEEEEEeCeEEEEE--CCE-----EEEEcCCCEEEECCC--------------CeEEEEeCC
Confidence 44666666543333355689999999988776 343 467899999753321 234556668
Q ss_pred eeEEEEEcHHHHH
Q 005042 577 EVEAFSLRAEELK 589 (717)
Q Consensus 577 ~~el~~L~~~df~ 589 (717)
++.++.++-.-+.
T Consensus 331 ~~~l~~~~d~p~~ 343 (354)
T 2d40_A 331 DSVLFSFSDRPVQ 343 (354)
T ss_dssp EEEEEEEESHHHH
T ss_pred CEEEEEEcCHHHH
Confidence 8888888655443
No 132
>3nw4_A Gentisate 1,2-dioxygenase; beta-barrel, oxidoreductase; HET: GTQ; 2.00A {Pseudaminobacter salicylatoxidans} PDB: 3nvc_A* 3nst_A* 3njz_A* 2phd_A* 3nkt_A* 3nl1_A* 4fag_A* 4fbf_A 4fah_A
Probab=21.67 E-value=1.1e+02 Score=32.25 Aligned_cols=75 Identities=13% Similarity=0.140 Sum_probs=53.6
Q ss_pred eEEecCCcEEEccCCCcceEEEEEeeEEEEEEecCCeeeeeeeeecCCCCeecHHhHhhhcCCCCCCCCCCcccEEEEcc
Q 005042 497 PSLCTEGTCVVREGDPVVEMLLIIRGSLESVTTDGGRTGFYNRGMLKEGDFCGEELLTWALDPKSVTNLPLSTRTVRALD 576 (717)
Q Consensus 497 ~~~~~~ge~Ii~eGd~~~~myfI~~G~v~v~~~~~g~e~~~~~~~l~~Gd~fGe~~l~~~l~~~~~~n~p~s~~tv~A~t 576 (717)
...+.+|+..-.--..+..+|.|.+|.-.+.. +++ ....++||.|---+. ...+..+.+
T Consensus 283 ~~~L~pG~~t~~hRht~s~Vy~V~eG~G~~~I--~~~-----~~~w~~gD~fvvP~w--------------~~h~~~n~~ 341 (368)
T 3nw4_A 283 FHRLRAGTETATRNEVGSTVFQVFEGAGAVVM--NGE-----TTKLEKGDMFVVPSW--------------VPWSLQAET 341 (368)
T ss_dssp EEEECTTCBCCCEEESSCEEEEEEESCEEEEE--TTE-----EEEECTTCEEEECTT--------------CCEEEEESS
T ss_pred eEEECCCCccCCeeccccEEEEEEeCcEEEEE--CCE-----EEEecCCCEEEECCC--------------CcEEEEeCC
Confidence 44667776654444567789999999987654 333 357899999864433 456778889
Q ss_pred eeEEEEEcHHHHHHHH
Q 005042 577 EVEAFSLRAEELKFVA 592 (717)
Q Consensus 577 ~~el~~L~~~df~~ll 592 (717)
++.++.++-.-+.+-+
T Consensus 342 ~a~Lf~~~D~Pl~~~L 357 (368)
T 3nw4_A 342 QFDLFRFSDAPIMEAL 357 (368)
T ss_dssp SEEEEEEESHHHHHHT
T ss_pred CEEEEEEeCHHHHHHh
Confidence 9999999887666544
No 133
>3h7j_A Bacilysin biosynthesis protein BACB; YWFC, bacilysin synthesis, anticapsin synthesis, BI-Cu double stranded beta helix, antibiotic biosynthesis; HET: PPY; 1.87A {Bacillus subtilis} PDB: 3h7y_A* 3h9a_A*
Probab=21.55 E-value=1.4e+02 Score=29.05 Aligned_cols=46 Identities=13% Similarity=0.010 Sum_probs=33.5
Q ss_pred eEEecC-CcEEEccCCCcceEEEEEeeEEEEEEecCCeeeeeeeeecCCCCeec
Q 005042 497 PSLCTE-GTCVVREGDPVVEMLLIIRGSLESVTTDGGRTGFYNRGMLKEGDFCG 549 (717)
Q Consensus 497 ~~~~~~-ge~Ii~eGd~~~~myfI~~G~v~v~~~~~g~e~~~~~~~l~~Gd~fG 549 (717)
...++| |..+-.---+..++++|++|.+++... ++ ...+.+||.+-
T Consensus 149 ~~~~~p~g~~~~~H~H~~~e~~~Vl~G~~~~~i~--~~-----~~~l~~Gd~i~ 195 (243)
T 3h7j_A 149 LAKIPGNGGEMPFHKHRNEQIGICIGGGYDMTVE--GC-----TVEMKFGTAYF 195 (243)
T ss_dssp EEEECTTTEEEEEECCSSEEEEEECSSCEEEEET--TE-----EEEECTTCEEE
T ss_pred EEEECCCCCcCCCEeCCCcEEEEEEECEEEEEEC--CE-----EEEECCCCEEE
Confidence 445788 877655455567899999999987653 33 35699999874
No 134
>1uij_A Beta subunit of beta conglycinin; double-stranded beta helix, SEED storage protein, sugar binding protein; 2.50A {Glycine max} SCOP: b.82.1.2 b.82.1.2 PDB: 1ipk_A 1ipj_A*
Probab=21.15 E-value=86 Score=33.64 Aligned_cols=53 Identities=13% Similarity=0.102 Sum_probs=37.6
Q ss_pred hceeEEecCCcEEEccCCCcceEEEEEeeEEEEEEecCCeeeeeeeeecCCCCeec
Q 005042 494 RLKPSLCTEGTCVVREGDPVVEMLLIIRGSLESVTTDGGRTGFYNRGMLKEGDFCG 549 (717)
Q Consensus 494 ~l~~~~~~~ge~Ii~eGd~~~~myfI~~G~v~v~~~~~g~e~~~~~~~l~~Gd~fG 549 (717)
.+....+.||..+..--...+++++|++|++++...+.+... ...+++||++-
T Consensus 50 s~~~~~l~PGg~~~pHh~~a~E~~yVl~G~g~v~~v~~~~~~---~~~l~~GDv~~ 102 (416)
T 1uij_A 50 RIVQFQSKPNTILLPHHADADFLLFVLSGRAILTLVNNDDRD---SYNLHPGDAQR 102 (416)
T ss_dssp EEEEEEECTTEEEEEEEESEEEEEEEEESCEEEEEECSSCEE---EEEECTTEEEE
T ss_pred EEEEEEeccCcCcccccCCCceEEEEEeeEEEEEEEECCCCe---EEEecCCCEEE
Confidence 345677889887655555677999999999987653333222 46899999874
No 135
>2vpv_A Protein MIF2, MIF2P; nucleus, mitosis, centromere, cell cycle, DNA-binding, kinetochore, cell division, phosphoprotein, jelly-roll fold; 2.7A {Saccharomyces cerevisiae}
Probab=21.02 E-value=58 Score=30.29 Aligned_cols=45 Identities=9% Similarity=0.003 Sum_probs=29.9
Q ss_pred EEecC-CcE-EEccCCCcceEEEEEeeEEEEEEecCCeeeeeeeeecCCCCeec
Q 005042 498 SLCTE-GTC-VVREGDPVVEMLLIIRGSLESVTTDGGRTGFYNRGMLKEGDFCG 549 (717)
Q Consensus 498 ~~~~~-ge~-Ii~eGd~~~~myfI~~G~v~v~~~~~g~e~~~~~~~l~~Gd~fG 549 (717)
..++| |.. =-..-....+++||++|.+++... ++ ...+.+||.+=
T Consensus 93 v~lpP~G~~~~~~~~h~gEE~~yVLeG~v~vtl~--g~-----~~~L~~Gds~~ 139 (166)
T 2vpv_A 93 LKLPAISGQKKLSNSFRTYITFHVIQGIVEVTVC--KN-----KFLSVKGSTFQ 139 (166)
T ss_dssp EEECSSGGGCEEEECCSEEEEEEEEESEEEEEET--TE-----EEEEETTCEEE
T ss_pred EEECCCCCCCCCccCCCceEEEEEEEeEEEEEEC--CE-----EEEEcCCCEEE
Confidence 35666 431 111234567899999999998763 33 46789999874
No 136
>3ht1_A REMF protein; cupin fold, Zn-binding, antibiotic biosynthesis, resistomycin, metalloprotein, cyclase, lyase; 1.20A {Streptomyces resistomycificus} PDB: 3ht2_A
Probab=21.00 E-value=77 Score=27.62 Aligned_cols=45 Identities=16% Similarity=0.165 Sum_probs=27.4
Q ss_pred EecCCcEEEccCCCcceEEEEEeeEEEEEEecCCeeeeeeeeecCCCCee
Q 005042 499 LCTEGTCVVREGDPVVEMLLIIRGSLESVTTDGGRTGFYNRGMLKEGDFC 548 (717)
Q Consensus 499 ~~~~ge~Ii~eGd~~~~myfI~~G~v~v~~~~~g~e~~~~~~~l~~Gd~f 548 (717)
.+.||..+-.--....++++|++|.+++....+++ ...+++||++
T Consensus 45 ~~~pg~~~~~H~H~~~e~~~vl~G~~~~~~~~~~~-----~~~l~~Gd~~ 89 (145)
T 3ht1_A 45 EVSPNGSTPPHFHEWEHEIYVLEGSMGLVLPDQGR-----TEEVGPGEAI 89 (145)
T ss_dssp EEEEEEECCCEECSSCEEEEEEEECEEEEEGGGTE-----EEEECTTCEE
T ss_pred EECCCCcCCCccCCCceEEEEEEeEEEEEEeECCE-----EEEECCCCEE
Confidence 34455443222223456678999999877323344 4678999976
No 137
>1j58_A YVRK protein; cupin, decarboxyklase, oxalate, manganese, formate, metal BI protein; 1.75A {Bacillus subtilis} SCOP: b.82.1.2 PDB: 1l3j_A 1uw8_A 2uyb_A 2uy9_A 2uy8_A 2v09_A 2uya_A 3s0m_A
Probab=21.00 E-value=1.1e+02 Score=31.89 Aligned_cols=50 Identities=22% Similarity=0.144 Sum_probs=34.8
Q ss_pred eeEEecCCcEEEccCCCcceEEEEEeeEEEEEEec-CCeeeeeeeeecCCCCee
Q 005042 496 KPSLCTEGTCVVREGDPVVEMLLIIRGSLESVTTD-GGRTGFYNRGMLKEGDFC 548 (717)
Q Consensus 496 ~~~~~~~ge~Ii~eGd~~~~myfI~~G~v~v~~~~-~g~e~~~~~~~l~~Gd~f 548 (717)
....+.+|..+-.--.+..++++|++|.+++...+ +|+.. ...+++||++
T Consensus 82 ~~~~l~pg~~~~~H~H~~~E~~~Vl~G~~~~~~~~~~g~~~---~~~l~~GD~~ 132 (385)
T 1j58_A 82 VNMRLKPGAIRELHWHKEAEWAYMIYGSARVTIVDEKGRSF---IDDVGEGDLW 132 (385)
T ss_dssp EEEEECTTCEEEEEEESSCEEEEEEEEEEEEEEECTTSCEE---EEEEETTEEE
T ss_pred EEEEECCCCCCCCccCChheEEEEEeeeEEEEEEeCCCcEE---EEEeCCCCEE
Confidence 44567888865333334789999999999988755 35432 2478999986
No 138
>3bu7_A Gentisate 1,2-dioxygenase; cupin domain, oxidoreductase, plasmid; 2.80A {Silicibacter pomeroyi} SCOP: b.82.1.23
Probab=20.88 E-value=59 Score=34.68 Aligned_cols=48 Identities=17% Similarity=0.147 Sum_probs=34.7
Q ss_pred eeEEecCCcEEEccCCCcceEEEEEeeEEEEEEecCCeeeeeeeeecCCCCeec
Q 005042 496 KPSLCTEGTCVVREGDPVVEMLLIIRGSLESVTTDGGRTGFYNRGMLKEGDFCG 549 (717)
Q Consensus 496 ~~~~~~~ge~Ii~eGd~~~~myfI~~G~v~v~~~~~g~e~~~~~~~l~~Gd~fG 549 (717)
....+.||+.+-.--....++|||++|+-..... +|+ ...+++||++=
T Consensus 126 ~~~~l~PG~~~~~HrH~~~ev~~IleG~G~~t~v-~G~-----~~~~~~GD~i~ 173 (394)
T 3bu7_A 126 GIQTMKAGERAGAHRHAASALRFIMEGSGAYTIV-DGH-----KVELGANDFVL 173 (394)
T ss_dssp EEEEECTTCBCCCEEESSCEEEEEEECSCEEEEE-TTE-----EEEECTTCEEE
T ss_pred EEEEECCCCCcCCccCCcceEEEEEEeeEEEEEE-CCE-----EEEEcCCCEEE
Confidence 5668888888765555566899999998754333 444 35789999984
No 139
>2vqa_A SLL1358 protein, MNCA; periplasmic binding protein, metal-binding protein, cupin, BI-cupin, oxalate decarboxylase; 2.95A {Synechocystis SP}
Probab=20.21 E-value=1.4e+02 Score=30.77 Aligned_cols=52 Identities=15% Similarity=0.131 Sum_probs=35.3
Q ss_pred ceeEEecCCcEEEccCCCc-ceEEEEEeeEEEEEEec-CCeeeeeeeeecCCCCeec
Q 005042 495 LKPSLCTEGTCVVREGDPV-VEMLLIIRGSLESVTTD-GGRTGFYNRGMLKEGDFCG 549 (717)
Q Consensus 495 l~~~~~~~ge~Ii~eGd~~-~~myfI~~G~v~v~~~~-~g~e~~~~~~~l~~Gd~fG 549 (717)
+....+.||..+-..-.+. .++++|++|.+++...+ +|+.. ...+++||++-
T Consensus 236 ~~~~~l~pg~~~~~H~H~~~~E~~~Vl~G~~~~~v~~~~g~~~---~~~l~~GD~~~ 289 (361)
T 2vqa_A 236 GALIHLEPGAMRQLHWHPNADEWQYVLDGEMDLTVFASEGKAS---VSRLQQGDVGY 289 (361)
T ss_dssp EEEEEECTTCEEEEEECSSCCEEEEEEESCEEEEEECSTTCEE---EEEECTTCEEE
T ss_pred EEEEEECCCcccccccCCCCCEEEEEEeCEEEEEEEcCCCcEE---EEEECCCCEEE
Confidence 3455778888764333333 89999999999887532 34311 36789999874
No 140
>2oa2_A BH2720 protein; 10175341, structural genomics, joint center for STRU genomics, JCSG, protein structure initiative, PSI-2, unknow function; HET: MSE; 1.41A {Bacillus halodurans}
Probab=20.05 E-value=1.2e+02 Score=26.79 Aligned_cols=51 Identities=8% Similarity=-0.160 Sum_probs=30.5
Q ss_pred eEEecCCcEEEccCC-CcceEEEEEeeEEEEEEecCCeeeeeeeeecCCCCee
Q 005042 497 PSLCTEGTCVVREGD-PVVEMLLIIRGSLESVTTDGGRTGFYNRGMLKEGDFC 548 (717)
Q Consensus 497 ~~~~~~ge~Ii~eGd-~~~~myfI~~G~v~v~~~~~g~e~~~~~~~l~~Gd~f 548 (717)
...+.||..+-.--. ..+++++|++|.+.+...+...... ....+.+||.+
T Consensus 47 ~~~l~pg~~~~~H~H~~~~E~~~Vl~G~~~~~i~~~~~~~~-~~~~l~~Gd~i 98 (148)
T 2oa2_A 47 LMSIQVGEDIGLEIHPHLDQFLRVEEGRGLVQMGHRQDNLH-FQEEVFDDYAI 98 (148)
T ss_dssp EEEECTTCBCCCBCCTTCEEEEEEEESEEEEEEESBTTBCC-EEEEEETTCEE
T ss_pred EEEECCCCccCceECCCCcEEEEEEeCEEEEEECCccccce-eeEEECCCCEE
Confidence 345677765432222 3458999999999887644321000 01578899976
Done!