Query 005043
Match_columns 717
No_of_seqs 430 out of 3284
Neff 7.4
Searched_HMMs 46136
Date Thu Mar 28 17:07:44 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/005043.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/005043hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN02193 nitrile-specifier pro 100.0 1.7E-42 3.8E-47 391.4 41.2 336 40-388 119-469 (470)
2 PLN02153 epithiospecifier prot 100.0 8.4E-41 1.8E-45 363.5 37.7 305 72-387 5-339 (341)
3 KOG4441 Proteins containing BT 100.0 1.2E-40 2.5E-45 381.9 32.8 290 22-342 263-555 (571)
4 KOG4693 Uncharacterized conser 100.0 8.7E-40 1.9E-44 323.2 24.9 337 75-475 3-358 (392)
5 KOG4441 Proteins containing BT 100.0 2.4E-39 5.3E-44 371.1 29.7 279 85-394 272-553 (571)
6 PLN02193 nitrile-specifier pro 100.0 6.1E-37 1.3E-41 346.3 38.7 283 94-393 116-416 (470)
7 PLN02153 epithiospecifier prot 100.0 9.8E-37 2.1E-41 331.6 32.6 289 33-333 24-339 (341)
8 PHA02713 hypothetical protein; 100.0 7.8E-37 1.7E-41 351.4 31.2 262 100-394 259-540 (557)
9 PHA02713 hypothetical protein; 100.0 7.4E-37 1.6E-41 351.6 29.1 242 72-341 280-541 (557)
10 KOG4693 Uncharacterized conser 100.0 3.6E-36 7.8E-41 297.6 20.7 274 33-319 15-312 (392)
11 TIGR03547 muta_rot_YjhT mutatr 100.0 7E-35 1.5E-39 317.6 32.0 274 84-385 3-344 (346)
12 KOG0379 Kelch repeat-containin 100.0 3.4E-35 7.4E-40 331.8 30.5 309 81-398 53-368 (482)
13 PRK14131 N-acetylneuraminic ac 100.0 5E-34 1.1E-38 314.2 31.0 286 73-392 16-373 (376)
14 PHA03098 kelch-like protein; P 100.0 3.8E-34 8.3E-39 329.4 30.6 245 72-342 272-520 (534)
15 TIGR03548 mutarot_permut cycli 100.0 7.6E-34 1.6E-38 306.6 30.5 264 87-375 2-314 (323)
16 PHA03098 kelch-like protein; P 100.0 4.1E-33 8.8E-38 320.9 29.8 263 99-394 251-518 (534)
17 TIGR03547 muta_rot_YjhT mutatr 100.0 6.6E-33 1.4E-37 302.1 29.2 264 36-331 12-344 (346)
18 TIGR03548 mutarot_permut cycli 100.0 1.6E-32 3.4E-37 296.4 28.5 260 38-321 10-315 (323)
19 PRK14131 N-acetylneuraminic ac 100.0 2.5E-32 5.4E-37 300.8 28.5 272 36-339 33-374 (376)
20 KOG4152 Host cell transcriptio 100.0 2.7E-32 5.8E-37 289.1 20.8 304 72-389 15-365 (830)
21 PHA02790 Kelch-like protein; P 100.0 2.8E-31 6E-36 301.0 28.4 211 94-340 267-477 (480)
22 KOG0379 Kelch repeat-containin 100.0 3.5E-31 7.6E-36 299.1 26.4 246 142-393 56-307 (482)
23 PHA02790 Kelch-like protein; P 100.0 3.7E-30 8.1E-35 291.8 28.8 209 152-393 267-476 (480)
24 KOG1230 Protein containing rep 100.0 5.9E-31 1.3E-35 274.3 20.1 247 84-341 62-348 (521)
25 KOG1230 Protein containing rep 100.0 3.4E-29 7.3E-34 261.2 22.0 237 42-292 79-349 (521)
26 KOG4152 Host cell transcriptio 100.0 1.8E-28 3.9E-33 260.2 20.8 291 28-333 27-363 (830)
27 COG3055 Uncharacterized protei 99.7 3.4E-16 7.4E-21 162.8 23.5 275 84-388 32-375 (381)
28 COG3055 Uncharacterized protei 99.7 1.9E-15 4.2E-20 157.3 22.7 263 36-331 41-372 (381)
29 KOG2437 Muskelin [Signal trans 99.6 9E-16 1.9E-20 164.1 6.7 269 123-393 238-540 (723)
30 KOG2437 Muskelin [Signal trans 99.5 7.2E-15 1.6E-19 157.3 5.9 263 71-342 236-543 (723)
31 PF13964 Kelch_6: Kelch motif 99.0 1.6E-09 3.6E-14 83.8 6.5 50 197-249 1-50 (50)
32 PF03089 RAG2: Recombination a 98.9 7.4E-08 1.6E-12 98.1 16.7 178 194-377 19-232 (337)
33 PF13964 Kelch_6: Kelch motif 98.8 6.5E-09 1.4E-13 80.4 6.4 45 88-132 1-46 (50)
34 PLN02772 guanylate kinase 98.8 2.2E-08 4.8E-13 108.8 11.7 90 194-285 21-110 (398)
35 PF13415 Kelch_3: Galactose ox 98.7 3.7E-08 8.1E-13 75.8 6.0 48 207-257 1-49 (49)
36 PF01344 Kelch_1: Kelch motif; 98.6 3.9E-08 8.4E-13 74.8 5.0 45 88-132 1-46 (47)
37 PF01344 Kelch_1: Kelch motif; 98.6 3.3E-08 7.3E-13 75.2 4.4 44 197-240 1-44 (47)
38 PF13415 Kelch_3: Galactose ox 98.6 5.6E-08 1.2E-12 74.8 5.7 48 156-206 1-49 (49)
39 PLN02772 guanylate kinase 98.6 2.1E-07 4.5E-12 101.3 11.7 90 243-335 19-110 (398)
40 PF13418 Kelch_4: Galactose ox 98.6 4.2E-08 9.2E-13 75.4 4.2 47 197-246 1-48 (49)
41 PF07646 Kelch_2: Kelch motif; 98.6 1.4E-07 3.1E-12 72.6 6.2 45 197-241 1-47 (49)
42 PF07646 Kelch_2: Kelch motif; 98.5 1.8E-07 4E-12 72.0 6.0 45 88-132 1-48 (49)
43 PF07250 Glyoxal_oxid_N: Glyox 98.5 7.1E-06 1.5E-10 84.5 19.1 151 175-346 48-211 (243)
44 PF03089 RAG2: Recombination a 98.5 1E-05 2.3E-10 82.7 18.9 159 158-321 40-231 (337)
45 PF13418 Kelch_4: Galactose ox 98.5 1.5E-07 3.1E-12 72.4 4.2 44 88-131 1-46 (49)
46 PF13854 Kelch_5: Kelch motif 98.4 5.8E-07 1.3E-11 66.9 5.4 40 85-124 1-42 (42)
47 PF13854 Kelch_5: Kelch motif 98.3 1.1E-06 2.4E-11 65.4 5.4 41 194-234 1-42 (42)
48 smart00612 Kelch Kelch domain. 98.2 1.5E-06 3.2E-11 65.4 4.9 47 209-259 1-47 (47)
49 smart00612 Kelch Kelch domain. 98.1 5.1E-06 1.1E-10 62.5 5.0 46 262-310 2-47 (47)
50 TIGR01640 F_box_assoc_1 F-box 98.1 0.0014 3E-08 67.3 24.6 202 174-389 15-230 (230)
51 TIGR01640 F_box_assoc_1 F-box 98.0 0.0016 3.4E-08 66.9 23.6 202 114-335 14-230 (230)
52 PF07250 Glyoxal_oxid_N: Glyox 97.9 0.00021 4.6E-09 73.7 14.2 143 225-391 47-201 (243)
53 PRK11138 outer membrane biogen 97.8 0.041 9E-07 61.2 31.7 255 72-390 44-315 (394)
54 PRK11138 outer membrane biogen 97.6 0.049 1.1E-06 60.7 27.8 227 91-390 113-356 (394)
55 PF13360 PQQ_2: PQQ-like domai 97.4 0.12 2.6E-06 52.5 26.0 185 95-336 33-233 (238)
56 TIGR03300 assembly_YfgL outer 97.3 0.18 3.9E-06 55.6 27.8 227 92-390 59-300 (377)
57 TIGR03300 assembly_YfgL outer 97.1 0.28 6E-06 54.1 26.8 187 94-339 101-305 (377)
58 PF13360 PQQ_2: PQQ-like domai 97.1 0.43 9.3E-06 48.4 27.3 211 115-390 4-233 (238)
59 PF08450 SGL: SMP-30/Gluconola 97.0 0.5 1.1E-05 48.7 26.8 222 98-370 11-243 (246)
60 TIGR03866 PQQ_ABC_repeats PQQ- 96.9 0.64 1.4E-05 48.2 27.7 186 100-337 2-191 (300)
61 PRK13684 Ycf48-like protein; P 96.9 0.52 1.1E-05 51.4 26.3 244 72-374 74-323 (334)
62 PF14870 PSII_BNR: Photosynthe 96.6 1.4 2.9E-05 47.4 26.9 244 72-374 4-253 (302)
63 PRK04792 tolB translocation pr 96.6 1.5 3.3E-05 49.7 27.7 148 173-341 242-390 (448)
64 PF07893 DUF1668: Protein of u 96.1 0.66 1.4E-05 50.8 20.7 120 155-292 75-216 (342)
65 TIGR02800 propeller_TolB tol-p 96.1 3.2 6.9E-05 46.2 27.1 148 173-341 214-362 (417)
66 PF12768 Rax2: Cortical protei 96.0 0.2 4.3E-06 53.2 15.4 123 212-342 2-130 (281)
67 KOG0310 Conserved WD40 repeat- 96.0 0.7 1.5E-05 51.2 19.7 216 97-376 78-302 (487)
68 KOG0161 Myosin class II heavy 96.0 0.014 2.9E-07 75.1 7.7 21 615-635 1667-1687(1930)
69 PF12768 Rax2: Cortical protei 95.9 0.11 2.5E-06 55.0 13.2 114 171-292 14-130 (281)
70 PF07893 DUF1668: Protein of u 95.9 0.24 5.2E-06 54.2 15.9 118 206-342 75-216 (342)
71 PRK13684 Ycf48-like protein; P 95.9 3.5 7.6E-05 44.9 25.4 242 71-373 32-279 (334)
72 cd00216 PQQ_DH Dehydrogenases 95.9 2.3 4.9E-05 48.9 24.6 144 72-239 39-192 (488)
73 PRK05137 tolB translocation pr 95.8 4.6 0.0001 45.6 27.9 188 173-390 226-415 (435)
74 PTZ00421 coronin; Provisional 95.7 5.5 0.00012 45.9 33.0 154 157-340 138-297 (493)
75 PF10282 Lactonase: Lactonase, 95.7 4.2 9.2E-05 44.4 25.3 276 72-393 23-330 (345)
76 PF14870 PSII_BNR: Photosynthe 95.6 4 8.7E-05 43.8 25.5 242 72-373 45-295 (302)
77 PRK04922 tolB translocation pr 95.6 5.4 0.00012 45.0 26.4 145 173-341 228-376 (433)
78 cd00200 WD40 WD40 domain, foun 95.5 3 6.5E-05 41.7 26.0 188 156-390 62-252 (289)
79 KOG2055 WD40 repeat protein [G 95.5 1 2.2E-05 49.7 18.4 153 156-336 224-377 (514)
80 KOG2055 WD40 repeat protein [G 95.4 0.7 1.5E-05 51.0 16.7 153 99-286 225-377 (514)
81 PRK00178 tolB translocation pr 95.3 6.3 0.00014 44.2 27.2 145 173-341 223-371 (430)
82 PF08450 SGL: SMP-30/Gluconola 95.2 4.4 9.6E-05 41.6 22.0 213 156-414 11-237 (246)
83 PRK05137 tolB translocation pr 95.0 4.1 8.8E-05 46.0 22.6 193 114-341 226-420 (435)
84 PRK03629 tolB translocation pr 95.0 8.2 0.00018 43.6 27.3 147 173-341 223-371 (429)
85 PRK11028 6-phosphogluconolacto 95.0 6.4 0.00014 42.3 27.1 240 100-389 3-260 (330)
86 PRK00178 tolB translocation pr 94.9 7.9 0.00017 43.5 24.5 143 224-391 223-367 (430)
87 cd00216 PQQ_DH Dehydrogenases 94.8 9.7 0.00021 43.8 26.0 123 152-290 57-192 (488)
88 TIGR03075 PQQ_enz_alc_DH PQQ-d 94.8 8.9 0.00019 44.6 25.2 217 152-390 65-336 (527)
89 TIGR03866 PQQ_ABC_repeats PQQ- 94.8 5.7 0.00012 41.1 28.0 232 99-390 43-282 (300)
90 PRK02889 tolB translocation pr 94.8 8.9 0.00019 43.2 24.8 145 173-341 220-368 (427)
91 PLN00033 photosystem II stabil 94.8 8.7 0.00019 43.0 26.2 220 72-341 118-364 (398)
92 TIGR03075 PQQ_enz_alc_DH PQQ-d 94.6 8.4 0.00018 44.8 24.2 129 92-239 63-198 (527)
93 cd00094 HX Hemopexin-like repe 94.4 3.4 7.4E-05 41.3 18.0 152 151-336 11-178 (194)
94 PRK04792 tolB translocation pr 94.4 11 0.00023 43.0 24.0 187 114-339 242-430 (448)
95 PF02897 Peptidase_S9_N: Proly 94.3 8.2 0.00018 43.0 22.9 255 98-392 134-409 (414)
96 TIGR02800 propeller_TolB tol-p 94.3 8.9 0.00019 42.5 23.1 147 114-292 214-363 (417)
97 PF07888 CALCOCO1: Calcium bin 94.1 0.19 4.2E-06 57.2 8.9 136 569-708 160-299 (546)
98 PRK04043 tolB translocation pr 94.0 13 0.00029 41.8 23.8 186 174-390 214-403 (419)
99 PF02191 OLF: Olfactomedin-lik 93.9 6.3 0.00014 41.2 19.3 194 156-371 30-237 (250)
100 PRK04922 tolB translocation pr 93.9 9.9 0.00021 42.9 22.6 144 224-391 228-372 (433)
101 PLN00181 protein SPA1-RELATED; 93.4 25 0.00053 43.1 26.5 144 156-334 587-739 (793)
102 PLN00181 protein SPA1-RELATED; 93.3 16 0.00035 44.6 24.5 140 157-334 545-691 (793)
103 PF05096 Glu_cyclase_2: Glutam 93.1 3.1 6.8E-05 43.5 15.1 113 200-336 47-160 (264)
104 cd00094 HX Hemopexin-like repe 93.0 7.1 0.00015 38.9 17.5 155 202-390 11-178 (194)
105 cd00200 WD40 WD40 domain, foun 93.0 11 0.00023 37.6 24.9 187 98-336 62-252 (289)
106 PRK04043 tolB translocation pr 92.9 19 0.00042 40.5 24.8 190 115-341 214-408 (419)
107 PRK01742 tolB translocation pr 92.5 22 0.00047 40.1 22.7 139 173-341 228-369 (429)
108 PTZ00421 coronin; Provisional 92.4 15 0.00033 42.4 21.1 154 208-390 138-293 (493)
109 KOG0310 Conserved WD40 repeat- 92.3 2.4 5.2E-05 47.2 13.6 149 205-388 77-226 (487)
110 PF10186 Atg14: UV radiation r 92.1 0.63 1.4E-05 49.5 8.9 131 569-700 23-162 (302)
111 COG1520 FOG: WD40-like repeat 91.8 24 0.00051 38.9 25.9 201 95-340 65-277 (370)
112 PF15188 CCDC-167: Coiled-coil 91.5 0.38 8.3E-06 41.3 5.1 74 605-693 2-75 (85)
113 PRK03629 tolB translocation pr 91.5 28 0.00061 39.2 24.1 189 114-340 223-413 (429)
114 PF10282 Lactonase: Lactonase, 91.5 24 0.00053 38.4 25.9 250 103-388 3-276 (345)
115 PRK10884 SH3 domain-containing 91.3 1.4 3E-05 44.6 9.8 81 577-674 90-170 (206)
116 PF02191 OLF: Olfactomedin-lik 91.3 18 0.0004 37.7 18.5 184 98-317 30-238 (250)
117 KOG2048 WD40 repeat protein [G 91.1 37 0.00079 39.7 21.6 119 253-390 387-508 (691)
118 PRK02889 tolB translocation pr 91.0 31 0.00067 38.8 23.1 187 173-390 176-363 (427)
119 COG4946 Uncharacterized protei 90.8 18 0.00039 40.6 18.1 195 112-339 57-262 (668)
120 KOG3478 Prefoldin subunit 6, K 90.8 1.1 2.4E-05 39.9 7.4 78 598-681 16-107 (120)
121 KOG0646 WD40 repeat protein [G 90.6 33 0.00071 38.4 20.4 39 588-626 433-471 (476)
122 PF13094 CENP-Q: CENP-Q, a CEN 90.6 1.5 3.2E-05 42.5 9.0 107 572-681 19-143 (160)
123 PF13851 GAS: Growth-arrest sp 90.5 2.2 4.7E-05 43.1 10.3 74 565-638 12-85 (201)
124 PF08581 Tup_N: Tup N-terminal 90.1 1.9 4E-05 36.7 8.0 69 589-667 6-74 (79)
125 PF02897 Peptidase_S9_N: Proly 90.1 35 0.00077 37.9 21.3 205 156-387 134-357 (414)
126 PF08268 FBA_3: F-box associat 90.0 9.3 0.0002 35.3 13.6 85 256-342 3-89 (129)
127 KOG2321 WD40 repeat protein [G 90.0 8 0.00017 44.1 14.9 127 246-390 131-261 (703)
128 PF13088 BNR_2: BNR repeat-lik 89.6 21 0.00046 37.1 17.7 232 72-314 28-275 (275)
129 PF05096 Glu_cyclase_2: Glutam 89.3 12 0.00025 39.4 14.8 160 150-340 48-210 (264)
130 PRK11028 6-phosphogluconolacto 89.0 36 0.00078 36.5 30.0 240 98-387 46-304 (330)
131 COG4946 Uncharacterized protei 89.0 45 0.00097 37.6 22.6 235 95-390 232-480 (668)
132 KOG0977 Nuclear envelope prote 88.9 1 2.2E-05 51.5 7.3 135 564-705 83-217 (546)
133 PTZ00420 coronin; Provisional 88.9 55 0.0012 38.5 22.8 153 157-341 138-301 (568)
134 KOG0933 Structural maintenance 88.7 1.6 3.4E-05 52.6 8.7 79 626-704 361-467 (1174)
135 smart00284 OLF Olfactomedin-li 88.6 34 0.00074 35.8 19.9 192 156-370 34-241 (255)
136 PRK01742 tolB translocation pr 88.1 50 0.0011 37.1 22.3 163 115-319 229-392 (429)
137 PF13851 GAS: Growth-arrest sp 87.8 3.7 7.9E-05 41.5 9.7 110 569-678 44-171 (201)
138 PLN02919 haloacid dehalogenase 87.6 93 0.002 39.5 26.8 212 98-336 635-891 (1057)
139 TIGR03074 PQQ_membr_DH membran 87.5 78 0.0017 38.6 28.0 213 41-287 135-389 (764)
140 PRK11281 hypothetical protein; 87.4 1.3 2.7E-05 55.5 7.4 108 571-678 71-220 (1113)
141 PLN00033 photosystem II stabil 87.1 57 0.0012 36.6 30.1 249 72-374 73-348 (398)
142 KOG4673 Transcription factor T 87.0 1.2 2.7E-05 51.2 6.3 17 692-708 612-628 (961)
143 PF03178 CPSF_A: CPSF A subuni 86.7 47 0.001 35.7 18.4 139 157-317 42-191 (321)
144 PF02239 Cytochrom_D1: Cytochr 86.5 51 0.0011 36.5 18.8 252 92-390 39-305 (369)
145 PF07888 CALCOCO1: Calcium bin 86.5 4 8.6E-05 46.9 10.1 48 658-706 333-385 (546)
146 PLN02919 haloacid dehalogenase 86.5 1E+02 0.0023 39.1 32.8 260 98-390 579-891 (1057)
147 PF12217 End_beta_propel: Cata 85.8 49 0.0011 34.6 25.4 269 94-374 21-334 (367)
148 PF08268 FBA_3: F-box associat 85.7 8.4 0.00018 35.6 10.4 85 154-240 3-88 (129)
149 PF04880 NUDE_C: NUDE protein, 85.7 0.82 1.8E-05 44.4 3.6 58 569-638 3-60 (166)
150 PRK11637 AmiB activator; Provi 85.6 3.4 7.4E-05 46.7 9.2 91 573-663 68-162 (428)
151 PF04111 APG6: Autophagy prote 85.3 2.3 5.1E-05 45.9 7.3 93 586-678 42-134 (314)
152 PF08826 DMPK_coil: DMPK coile 84.8 5.4 0.00012 32.2 7.3 54 575-628 6-59 (61)
153 smart00787 Spc7 Spc7 kinetocho 84.7 3.7 8E-05 44.3 8.4 18 692-709 271-288 (312)
154 KOG0649 WD40 repeat protein [G 84.1 56 0.0012 33.9 16.0 159 124-316 99-263 (325)
155 PF05266 DUF724: Protein of un 84.0 6.6 0.00014 39.3 9.2 85 585-676 101-185 (190)
156 PF10186 Atg14: UV radiation r 84.0 1.4 3.1E-05 46.8 4.9 98 594-691 63-160 (302)
157 PF12329 TMF_DNA_bd: TATA elem 84.0 6 0.00013 33.2 7.6 64 572-635 11-74 (74)
158 TIGR02169 SMC_prok_A chromosom 83.8 2 4.3E-05 54.7 6.9 13 662-674 446-458 (1164)
159 COG1196 Smc Chromosome segrega 83.7 3.1 6.7E-05 53.1 8.5 49 585-633 388-436 (1163)
160 KOG0306 WD40-repeat-containing 83.7 94 0.002 37.0 19.2 67 151-235 378-445 (888)
161 TIGR02658 TTQ_MADH_Hv methylam 83.6 76 0.0016 35.0 28.7 260 99-390 13-333 (352)
162 KOG0316 Conserved WD40 repeat- 83.4 34 0.00074 35.2 13.8 173 206-416 69-250 (307)
163 PF08317 Spc7: Spc7 kinetochor 83.3 2.6 5.6E-05 45.8 6.6 135 571-709 140-293 (325)
164 PF12718 Tropomyosin_1: Tropom 83.2 13 0.00028 35.4 10.5 89 570-672 32-130 (143)
165 KOG0993 Rab5 GTPase effector R 83.2 6.8 0.00015 42.8 9.4 70 567-636 101-176 (542)
166 KOG1899 LAR transmembrane tyro 82.7 5.6 0.00012 45.6 8.9 54 585-638 144-197 (861)
167 KOG3215 Uncharacterized conser 82.7 12 0.00027 37.2 10.2 125 569-694 36-186 (222)
168 PF00261 Tropomyosin: Tropomyo 82.5 7 0.00015 40.5 9.2 105 572-676 112-230 (237)
169 PRK09039 hypothetical protein; 82.4 4.1 8.9E-05 44.6 7.8 41 565-605 66-106 (343)
170 PF12777 MT: Microtubule-bindi 81.4 1.8 3.9E-05 47.4 4.6 95 573-667 214-308 (344)
171 COG4257 Vgb Streptogramin lyas 81.2 55 0.0012 34.6 14.7 112 156-292 199-314 (353)
172 PF03178 CPSF_A: CPSF A subuni 81.2 82 0.0018 33.7 17.8 130 208-359 42-181 (321)
173 PRK11281 hypothetical protein; 80.8 4.3 9.4E-05 51.0 8.0 136 573-710 43-181 (1113)
174 PF14197 Cep57_CLD_2: Centroso 80.4 11 0.00023 31.3 7.7 59 569-627 8-66 (69)
175 PF05529 Bap31: B-cell recepto 80.2 9 0.0002 38.2 8.8 26 609-634 162-187 (192)
176 PF15619 Lebercilin: Ciliary p 79.9 6.3 0.00014 39.5 7.4 75 607-705 117-191 (194)
177 PF11932 DUF3450: Protein of u 79.2 10 0.00022 39.6 9.1 86 584-669 46-143 (251)
178 PF09910 DUF2139: Uncharacteri 78.9 97 0.0021 33.1 22.4 141 173-333 78-230 (339)
179 COG1196 Smc Chromosome segrega 78.8 6 0.00013 50.5 8.7 58 578-635 714-771 (1163)
180 COG1520 FOG: WD40-like repeat 78.8 1.1E+02 0.0023 33.6 22.4 196 98-332 111-319 (370)
181 PF04012 PspA_IM30: PspA/IM30 78.7 17 0.00037 37.0 10.5 68 567-634 6-77 (221)
182 COG4942 Membrane-bound metallo 78.3 8 0.00017 43.0 8.2 81 587-681 38-118 (420)
183 KOG2321 WD40 repeat protein [G 78.2 52 0.0011 37.9 14.4 126 194-339 130-264 (703)
184 cd00632 Prefoldin_beta Prefold 78.2 15 0.00032 32.9 8.7 34 568-601 8-41 (105)
185 PF00261 Tropomyosin: Tropomyo 77.9 1.4 3.1E-05 45.6 2.3 138 569-708 32-192 (237)
186 PHA02562 46 endonuclease subun 77.1 8.5 0.00018 44.9 8.7 95 584-681 224-323 (562)
187 KOG0980 Actin-binding protein 76.9 9.2 0.0002 45.8 8.5 57 576-632 441-518 (980)
188 PF12718 Tropomyosin_1: Tropom 76.8 29 0.00062 33.1 10.6 99 572-674 6-104 (143)
189 PF05529 Bap31: B-cell recepto 76.7 10 0.00023 37.8 8.0 56 578-633 116-172 (192)
190 PF04156 IncA: IncA protein; 76.5 10 0.00022 37.6 7.9 79 570-648 99-181 (191)
191 COG4942 Membrane-bound metallo 76.4 8.5 0.00018 42.8 7.8 81 568-652 61-141 (420)
192 TIGR02168 SMC_prok_B chromosom 76.1 5.6 0.00012 50.5 7.3 6 44-49 25-30 (1179)
193 PF08614 ATG16: Autophagy prot 75.8 3 6.5E-05 41.8 3.8 66 570-635 78-143 (194)
194 PF05546 She9_MDM33: She9 / Md 75.7 25 0.00055 35.4 10.1 71 573-643 32-127 (207)
195 PRK10115 protease 2; Provision 75.2 2E+02 0.0043 34.8 26.2 254 98-392 137-399 (686)
196 PF06428 Sec2p: GDP/GTP exchan 74.7 8.3 0.00018 34.4 5.9 31 668-705 55-85 (100)
197 COG4257 Vgb Streptogramin lyas 74.3 1.2E+02 0.0027 32.1 19.7 243 115-416 84-331 (353)
198 KOG0281 Beta-TrCP (transducin 74.3 18 0.0004 38.9 9.2 182 155-390 245-431 (499)
199 PF09726 Macoilin: Transmembra 74.2 13 0.00027 44.7 9.0 13 693-705 644-656 (697)
200 KOG0977 Nuclear envelope prote 73.8 14 0.0003 42.7 8.7 112 570-684 110-235 (546)
201 TIGR03185 DNA_S_dndD DNA sulfu 73.7 14 0.0003 44.1 9.4 66 569-634 212-288 (650)
202 PRK13169 DNA replication intia 73.5 6.8 0.00015 35.5 5.1 52 604-669 4-55 (110)
203 PF09726 Macoilin: Transmembra 73.4 19 0.00041 43.2 10.3 29 570-598 492-520 (697)
204 KOG0250 DNA repair protein RAD 73.3 14 0.0003 45.4 9.1 109 565-677 660-768 (1074)
205 KOG0266 WD40 repeat-containing 73.3 1.7E+02 0.0037 33.3 20.1 105 156-287 214-322 (456)
206 COG4447 Uncharacterized protei 73.3 89 0.0019 33.1 13.6 142 149-318 47-190 (339)
207 KOG0996 Structural maintenance 73.2 11 0.00023 46.7 8.0 106 568-675 902-1009(1293)
208 PF14583 Pectate_lyase22: Olig 72.7 1.6E+02 0.0035 32.7 16.4 213 98-341 46-280 (386)
209 TIGR03007 pepcterm_ChnLen poly 72.6 18 0.00038 41.7 9.7 108 570-677 258-382 (498)
210 COG1566 EmrA Multidrug resista 72.6 16 0.00034 40.2 8.7 109 569-677 94-210 (352)
211 PF10211 Ax_dynein_light: Axon 72.6 18 0.00038 36.2 8.4 67 597-669 116-182 (189)
212 PF09304 Cortex-I_coil: Cortex 72.6 24 0.00053 31.6 8.2 58 569-635 26-83 (107)
213 KOG1029 Endocytic adaptor prot 72.6 14 0.00031 43.5 8.5 124 569-708 320-460 (1118)
214 PF00769 ERM: Ezrin/radixin/mo 72.0 11 0.00024 39.3 7.0 49 584-632 37-85 (246)
215 COG3823 Glutamine cyclotransfe 71.9 1.2E+02 0.0026 30.9 13.9 187 92-317 49-248 (262)
216 PRK05431 seryl-tRNA synthetase 71.6 17 0.00036 41.2 8.9 65 586-650 41-109 (425)
217 KOG4593 Mitotic checkpoint pro 71.5 23 0.00049 41.6 9.8 100 571-687 120-220 (716)
218 PF00038 Filament: Intermediat 71.4 9.5 0.00021 41.0 6.7 98 570-667 15-134 (312)
219 KOG0646 WD40 repeat protein [G 71.0 87 0.0019 35.2 13.7 24 308-336 287-310 (476)
220 KOG4378 Nuclear protein COP1 [ 71.0 63 0.0014 36.6 12.6 93 277-392 189-285 (673)
221 KOG1332 Vesicle coat complex C 70.8 79 0.0017 32.8 12.4 24 262-290 177-200 (299)
222 PF12217 End_beta_propel: Cata 70.7 1.4E+02 0.0031 31.3 15.9 183 72-269 113-334 (367)
223 PRK10929 putative mechanosensi 70.6 8.8 0.00019 48.2 6.9 107 571-677 56-200 (1109)
224 PRK09039 hypothetical protein; 70.6 23 0.0005 38.8 9.5 67 571-637 86-159 (343)
225 TIGR01843 type_I_hlyD type I s 70.4 21 0.00046 39.7 9.5 21 656-676 252-272 (423)
226 TIGR00414 serS seryl-tRNA synt 70.2 18 0.00039 40.8 8.8 67 585-651 42-113 (418)
227 PF10473 CENP-F_leu_zip: Leuci 70.1 28 0.0006 33.1 8.5 61 584-644 42-109 (140)
228 KOG2048 WD40 repeat protein [G 69.9 2.3E+02 0.0051 33.4 20.4 162 150-341 387-559 (691)
229 PHA02562 46 endonuclease subun 69.9 28 0.0006 40.6 10.6 21 655-675 384-404 (562)
230 KOG0266 WD40 repeat-containing 69.9 2E+02 0.0044 32.7 22.1 149 156-334 257-410 (456)
231 PF11365 DUF3166: Protein of u 69.5 5.5 0.00012 35.1 3.4 42 611-666 4-45 (96)
232 KOG1036 Mitotic spindle checkp 69.2 1.7E+02 0.0036 31.4 16.2 130 174-335 36-165 (323)
233 TIGR01554 major_cap_HK97 phage 69.2 20 0.00043 39.7 8.8 42 602-643 28-69 (378)
234 PF05701 WEMBL: Weak chloropla 69.1 15 0.00032 42.8 7.9 107 569-680 123-234 (522)
235 PF10212 TTKRSYEDQ: Predicted 69.0 17 0.00036 41.5 8.0 73 565-637 412-484 (518)
236 KOG0249 LAR-interacting protei 68.6 20 0.00044 42.0 8.6 103 571-673 110-239 (916)
237 PF05010 TACC: Transforming ac 68.5 37 0.0008 34.4 9.6 111 565-680 43-184 (207)
238 PLN02939 transferase, transfer 68.4 17 0.00037 44.9 8.4 25 646-670 229-253 (977)
239 cd00089 HR1 Protein kinase C-r 68.3 17 0.00036 30.1 6.1 55 581-635 10-69 (72)
240 PF01576 Myosin_tail_1: Myosin 68.3 1.7 3.6E-05 53.5 0.0 126 578-708 572-737 (859)
241 PLN03215 ascorbic acid mannose 68.2 1.1E+02 0.0025 33.8 14.1 138 182-340 189-353 (373)
242 PF08317 Spc7: Spc7 kinetochor 68.1 30 0.00064 37.6 9.7 18 656-673 275-292 (325)
243 PF06637 PV-1: PV-1 protein (P 68.1 19 0.00041 39.2 7.7 32 570-601 289-327 (442)
244 PRK13729 conjugal transfer pil 68.1 12 0.00026 42.3 6.6 22 610-631 99-120 (475)
245 COG1579 Zn-ribbon protein, pos 68.0 30 0.00064 35.9 8.9 120 569-688 13-148 (239)
246 TIGR02338 gimC_beta prefoldin, 67.7 37 0.00081 30.6 8.7 34 568-601 12-45 (110)
247 KOG2391 Vacuolar sorting prote 67.3 33 0.00072 36.9 9.2 89 565-657 209-298 (365)
248 PF12795 MscS_porin: Mechanose 67.3 15 0.00031 38.1 6.8 125 583-709 10-137 (240)
249 TIGR03752 conj_TIGR03752 integ 67.2 29 0.00062 39.3 9.3 67 569-635 69-136 (472)
250 smart00787 Spc7 Spc7 kinetocho 67.1 46 0.001 36.0 10.7 17 656-672 270-286 (312)
251 PF13088 BNR_2: BNR repeat-lik 67.0 1.6E+02 0.0035 30.4 20.8 205 156-369 58-275 (275)
252 PF10212 TTKRSYEDQ: Predicted 66.6 37 0.00081 38.8 10.1 67 569-635 430-500 (518)
253 KOG0296 Angio-associated migra 66.4 2.1E+02 0.0045 31.4 23.0 146 98-286 75-223 (399)
254 KOG0249 LAR-interacting protei 66.4 24 0.00053 41.4 8.6 84 574-664 175-258 (916)
255 PF00038 Filament: Intermediat 66.2 64 0.0014 34.5 11.8 17 670-686 296-312 (312)
256 PLN02320 seryl-tRNA synthetase 65.0 26 0.00056 40.3 8.6 68 585-652 105-175 (502)
257 PF06156 DUF972: Protein of un 64.9 15 0.00033 33.1 5.5 53 605-671 5-57 (107)
258 PTZ00420 coronin; Provisional 64.6 2.9E+02 0.0063 32.5 23.9 109 260-388 138-249 (568)
259 smart00284 OLF Olfactomedin-li 64.3 1.9E+02 0.0041 30.3 18.0 160 207-390 34-211 (255)
260 PF03962 Mnd1: Mnd1 family; I 64.2 32 0.00068 34.4 8.2 25 608-632 103-127 (188)
261 COG0172 SerS Seryl-tRNA synthe 64.1 17 0.00037 40.8 6.8 35 617-651 70-112 (429)
262 KOG3088 Secretory carrier memb 64.1 9.6 0.00021 40.0 4.5 40 614-653 63-102 (313)
263 PF01166 TSC22: TSC-22/dip/bun 63.9 2.9 6.4E-05 33.0 0.6 33 620-666 12-44 (59)
264 PLN02678 seryl-tRNA synthetase 63.4 30 0.00064 39.4 8.7 67 585-651 45-115 (448)
265 PF05816 TelA: Toxic anion res 63.3 53 0.0011 35.8 10.5 100 572-675 83-187 (333)
266 PF05615 THOC7: Tho complex su 63.3 31 0.00067 32.4 7.6 75 578-652 51-128 (139)
267 TIGR00606 rad50 rad50. This fa 63.0 21 0.00044 46.4 8.3 60 584-643 755-820 (1311)
268 TIGR03185 DNA_S_dndD DNA sulfu 62.9 37 0.00081 40.6 10.0 48 589-636 204-251 (650)
269 PRK08476 F0F1 ATP synthase sub 62.8 58 0.0012 30.8 9.3 83 578-686 36-118 (141)
270 PRK02224 chromosome segregatio 62.5 34 0.00074 42.4 9.9 14 664-677 412-425 (880)
271 KOG4643 Uncharacterized coiled 62.3 91 0.002 38.4 12.5 52 613-676 269-320 (1195)
272 PF02403 Seryl_tRNA_N: Seryl-t 62.2 43 0.00092 29.9 8.0 66 583-648 39-108 (108)
273 KOG0772 Uncharacterized conser 62.1 2.9E+02 0.0064 31.7 20.2 199 155-390 225-448 (641)
274 KOG0649 WD40 repeat protein [G 62.0 2.1E+02 0.0045 29.9 16.2 136 184-341 100-243 (325)
275 COG1382 GimC Prefoldin, chaper 61.7 64 0.0014 29.7 8.9 72 569-641 16-96 (119)
276 PRK04863 mukB cell division pr 61.7 53 0.0012 43.0 11.5 22 655-676 461-482 (1486)
277 PRK13729 conjugal transfer pil 61.7 21 0.00045 40.5 6.9 50 590-639 72-121 (475)
278 PF12325 TMF_TATA_bd: TATA ele 61.6 72 0.0016 29.5 9.3 95 566-668 16-114 (120)
279 PF08826 DMPK_coil: DMPK coile 61.6 61 0.0013 26.2 7.7 54 587-640 4-57 (61)
280 PRK09343 prefoldin subunit bet 61.5 42 0.00092 30.9 7.9 34 568-601 16-49 (121)
281 KOG1664 Vacuolar H+-ATPase V1 60.8 39 0.00084 33.8 7.8 97 565-679 49-159 (220)
282 PRK11519 tyrosine kinase; Prov 60.7 60 0.0013 39.4 11.3 37 569-605 256-292 (719)
283 PF08614 ATG16: Autophagy prot 60.7 5.4 0.00012 39.9 2.0 82 580-675 74-155 (194)
284 PF00769 ERM: Ezrin/radixin/mo 60.6 60 0.0013 33.9 9.8 64 570-633 9-72 (246)
285 PF03962 Mnd1: Mnd1 family; I 60.1 35 0.00077 34.0 7.7 51 574-625 77-127 (188)
286 COG3883 Uncharacterized protei 60.0 37 0.00081 35.6 8.0 75 586-689 37-111 (265)
287 PF04111 APG6: Autophagy prote 59.6 19 0.00041 39.0 6.1 30 572-601 49-78 (314)
288 PRK06568 F0F1 ATP synthase sub 59.5 50 0.0011 31.9 8.3 27 580-606 35-61 (154)
289 TIGR02658 TTQ_MADH_Hv methylam 59.4 2.8E+02 0.006 30.6 25.9 121 157-289 13-142 (352)
290 COG2433 Uncharacterized conser 59.2 40 0.00087 39.1 8.7 66 570-635 426-508 (652)
291 PF07464 ApoLp-III: Apolipopho 59.2 70 0.0015 30.9 9.2 86 569-671 44-139 (155)
292 PF04582 Reo_sigmaC: Reovirus 59.2 1.6 3.5E-05 46.8 -2.1 21 692-712 140-160 (326)
293 TIGR01010 BexC_CtrB_KpsE polys 59.2 39 0.00085 37.1 8.7 52 584-635 174-227 (362)
294 PF04912 Dynamitin: Dynamitin 59.1 9.3 0.0002 42.6 3.8 30 611-640 90-119 (388)
295 PF06433 Me-amine-dh_H: Methyl 59.0 2.8E+02 0.006 30.4 21.3 115 99-237 3-131 (342)
296 KOG0289 mRNA splicing factor [ 58.9 2.7E+02 0.0059 31.3 14.5 69 156-240 399-470 (506)
297 TIGR03007 pepcterm_ChnLen poly 58.5 43 0.00093 38.5 9.2 108 573-680 204-347 (498)
298 KOG0281 Beta-TrCP (transducin 58.5 68 0.0015 34.8 9.6 89 225-334 341-429 (499)
299 KOG0996 Structural maintenance 58.5 24 0.00052 43.8 7.1 54 570-623 402-455 (1293)
300 PRK03918 chromosome segregatio 58.2 46 0.00099 41.2 10.0 47 661-707 388-434 (880)
301 PF06705 SF-assemblin: SF-asse 58.1 59 0.0013 33.8 9.3 104 584-687 89-220 (247)
302 KOG0995 Centromere-associated 58.0 48 0.001 38.2 9.0 135 568-702 230-388 (581)
303 PRK09174 F0F1 ATP synthase sub 58.0 47 0.001 33.6 8.2 40 581-627 85-124 (204)
304 COG3386 Gluconolactonase [Carb 57.9 2.7E+02 0.0059 30.0 24.0 175 175-373 87-276 (307)
305 KOG3313 Molecular chaperone Pr 57.8 13 0.00027 36.3 3.8 72 584-669 55-161 (187)
306 COG1579 Zn-ribbon protein, pos 57.6 69 0.0015 33.2 9.4 52 568-619 91-142 (239)
307 KOG1853 LIS1-interacting prote 57.6 1.3E+02 0.0027 31.2 11.0 138 566-714 45-193 (333)
308 PLN03215 ascorbic acid mannose 57.6 3.1E+02 0.0067 30.5 15.8 103 73-192 189-305 (373)
309 PRK01029 tolB translocation pr 57.5 3.2E+02 0.007 30.7 21.2 209 115-353 212-423 (428)
310 PRK05759 F0F1 ATP synthase sub 57.2 60 0.0013 30.9 8.6 44 575-618 30-73 (156)
311 KOG3881 Uncharacterized conser 57.0 2.3E+02 0.0049 31.4 13.4 156 99-284 161-321 (412)
312 PF10267 Tmemb_cc2: Predicted 56.9 8.3 0.00018 42.8 2.8 14 657-670 276-289 (395)
313 PF02050 FliJ: Flagellar FliJ 56.9 20 0.00043 31.9 4.9 81 597-681 1-83 (123)
314 PRK14474 F0F1 ATP synthase sub 56.8 54 0.0012 34.3 8.7 30 578-607 34-63 (250)
315 PF04899 MbeD_MobD: MbeD/MobD 56.7 58 0.0012 27.1 7.0 52 584-635 3-55 (70)
316 PRK14472 F0F1 ATP synthase sub 56.6 1E+02 0.0022 30.2 10.2 32 575-606 44-75 (175)
317 PF06098 Radial_spoke_3: Radia 56.6 95 0.0021 33.2 10.5 107 570-676 150-265 (291)
318 KOG0243 Kinesin-like protein [ 56.5 50 0.0011 40.9 9.3 92 583-675 451-550 (1041)
319 TIGR03321 alt_F1F0_F0_B altern 56.4 45 0.00098 34.7 8.1 30 576-605 32-61 (246)
320 KOG4571 Activating transcripti 56.2 39 0.00085 35.7 7.4 54 605-672 238-291 (294)
321 PF10146 zf-C4H2: Zinc finger- 56.1 65 0.0014 33.2 9.0 70 566-635 32-101 (230)
322 PF07798 DUF1640: Protein of u 55.6 58 0.0013 32.0 8.4 103 579-687 11-118 (177)
323 COG0216 PrfA Protein chain rel 55.6 26 0.00057 37.8 6.1 22 571-592 5-26 (363)
324 PF02185 HR1: Hr1 repeat; Int 55.4 47 0.001 27.3 6.5 54 583-636 4-61 (70)
325 PF03148 Tektin: Tektin family 55.4 83 0.0018 35.1 10.5 86 597-682 247-349 (384)
326 PRK10884 SH3 domain-containing 55.1 48 0.001 33.6 7.8 19 613-631 137-155 (206)
327 PRK03947 prefoldin subunit alp 55.1 1.1E+02 0.0025 28.6 10.0 10 604-613 23-32 (140)
328 KOG0296 Angio-associated migra 55.1 3.2E+02 0.007 30.0 19.7 145 156-336 75-223 (399)
329 COG0823 TolB Periplasmic compo 55.0 2.1E+02 0.0045 32.4 13.6 149 174-342 219-368 (425)
330 TIGR01843 type_I_hlyD type I s 54.9 61 0.0013 36.0 9.5 10 694-703 255-264 (423)
331 PRK03918 chromosome segregatio 54.8 63 0.0014 40.0 10.4 59 591-649 663-721 (880)
332 PF05278 PEARLI-4: Arabidopsis 54.8 72 0.0016 33.6 9.0 72 588-666 187-258 (269)
333 PRK07353 F0F1 ATP synthase sub 54.7 40 0.00088 31.5 6.8 28 578-605 34-61 (140)
334 PF00901 Orbi_VP5: Orbivirus o 54.4 34 0.00074 38.7 7.0 103 570-672 58-173 (508)
335 COG4447 Uncharacterized protei 54.3 3E+02 0.0065 29.4 13.6 246 72-372 30-279 (339)
336 PRK13454 F0F1 ATP synthase sub 53.8 45 0.00098 33.0 7.2 40 580-626 62-101 (181)
337 PRK02224 chromosome segregatio 53.8 28 0.0006 43.1 7.1 35 567-601 469-503 (880)
338 KOG3433 Protein involved in me 53.6 91 0.002 30.7 8.8 37 600-636 107-144 (203)
339 KOG0018 Structural maintenance 53.6 58 0.0013 40.3 9.1 100 570-673 649-748 (1141)
340 TIGR03017 EpsF chain length de 53.1 1.3E+02 0.0028 33.9 11.8 58 610-678 313-370 (444)
341 PRK13460 F0F1 ATP synthase sub 52.8 1.3E+02 0.0028 29.4 10.2 32 578-609 45-76 (173)
342 PRK14472 F0F1 ATP synthase sub 52.6 57 0.0012 31.9 7.7 45 584-628 46-90 (175)
343 COG1842 PspA Phage shock prote 52.1 88 0.0019 32.2 9.2 68 567-634 7-78 (225)
344 KOG0293 WD40 repeat-containing 51.9 3.6E+02 0.0078 30.2 13.9 147 156-341 280-431 (519)
345 PF15188 CCDC-167: Coiled-coil 51.9 38 0.00082 29.3 5.4 46 583-635 8-56 (85)
346 PF07889 DUF1664: Protein of u 51.7 1.1E+02 0.0023 28.6 8.7 54 582-635 70-123 (126)
347 PRK13455 F0F1 ATP synthase sub 51.5 61 0.0013 32.0 7.8 29 578-606 56-84 (184)
348 KOG1003 Actin filament-coating 51.5 1.5E+02 0.0032 29.7 10.0 93 569-675 77-183 (205)
349 PF14362 DUF4407: Domain of un 51.3 1.1E+02 0.0024 32.6 10.4 63 610-681 184-246 (301)
350 PF05701 WEMBL: Weak chloropla 51.1 40 0.00086 39.2 7.3 28 607-634 234-261 (522)
351 COG4880 Secreted protein conta 51.1 3.8E+02 0.0083 30.2 14.0 182 110-341 402-598 (603)
352 PF14193 DUF4315: Domain of un 51.0 31 0.00066 29.7 4.7 58 603-667 3-62 (83)
353 KOG2148 Exocyst protein Sec3 [ 50.9 42 0.00091 39.2 7.1 84 582-667 191-287 (867)
354 KOG0315 G-protein beta subunit 50.9 3.2E+02 0.0069 28.7 21.1 192 156-389 51-247 (311)
355 COG0823 TolB Periplasmic compo 50.9 4.2E+02 0.009 30.0 15.5 106 173-293 262-369 (425)
356 PF02050 FliJ: Flagellar FliJ 50.9 86 0.0019 27.7 8.2 27 608-634 59-85 (123)
357 PRK14475 F0F1 ATP synthase sub 50.8 95 0.0021 30.2 8.9 39 581-626 42-80 (167)
358 COG4026 Uncharacterized protei 50.7 79 0.0017 32.1 8.1 64 572-635 141-204 (290)
359 KOG4403 Cell surface glycoprot 50.7 99 0.0021 34.4 9.5 94 585-679 257-369 (575)
360 KOG3856 Uncharacterized conser 50.5 26 0.00057 32.1 4.4 29 595-623 11-39 (135)
361 COG0497 RecN ATPase involved i 50.4 53 0.0012 38.2 8.0 100 582-682 264-374 (557)
362 PF15525 DUF4652: Domain of un 50.3 2.5E+02 0.0054 28.1 11.4 71 112-190 86-157 (200)
363 KOG1853 LIS1-interacting prote 50.2 1.2E+02 0.0025 31.5 9.4 117 569-701 16-142 (333)
364 PF15030 DUF4527: Protein of u 49.9 80 0.0017 32.5 8.1 40 605-644 48-94 (277)
365 KOG4593 Mitotic checkpoint pro 49.8 87 0.0019 37.0 9.5 117 567-684 504-627 (716)
366 PF12325 TMF_TATA_bd: TATA ele 49.8 73 0.0016 29.4 7.3 38 569-606 33-70 (120)
367 PRK09174 F0F1 ATP synthase sub 49.5 1.3E+02 0.0028 30.4 9.9 32 599-630 89-120 (204)
368 TIGR02680 conserved hypothetic 49.4 61 0.0013 42.3 9.3 24 657-680 368-391 (1353)
369 PRK13461 F0F1 ATP synthase sub 49.4 1.1E+02 0.0023 29.4 9.0 64 577-642 33-100 (159)
370 KOG1842 FYVE finger-containing 49.4 62 0.0013 36.1 7.9 71 568-638 328-414 (505)
371 PF10234 Cluap1: Clusterin-ass 49.3 97 0.0021 32.7 9.0 13 659-671 248-260 (267)
372 PF05911 DUF869: Plant protein 49.2 68 0.0015 39.0 8.9 66 572-637 623-688 (769)
373 PF05262 Borrelia_P83: Borreli 49.2 53 0.0011 37.7 7.6 17 662-678 330-346 (489)
374 KOG1962 B-cell receptor-associ 49.1 46 0.001 33.8 6.4 54 590-643 130-183 (216)
375 KOG4001 Axonemal dynein light 49.1 37 0.00081 33.8 5.6 17 569-585 167-183 (259)
376 PF02239 Cytochrom_D1: Cytochr 49.1 4.1E+02 0.0088 29.4 17.2 255 98-391 88-351 (369)
377 KOG0994 Extracellular matrix g 48.8 75 0.0016 39.6 9.0 24 682-705 1686-1716(1758)
378 KOG0161 Myosin class II heavy 48.7 65 0.0014 42.9 9.2 62 575-636 868-929 (1930)
379 PRK09173 F0F1 ATP synthase sub 48.6 75 0.0016 30.5 7.8 25 580-604 33-57 (159)
380 KOG0971 Microtubule-associated 48.6 92 0.002 37.9 9.5 34 602-635 312-345 (1243)
381 PRK11448 hsdR type I restricti 48.5 58 0.0013 41.5 8.6 67 571-637 147-213 (1123)
382 KOG1036 Mitotic spindle checkp 48.1 3.8E+02 0.0083 28.8 14.0 106 94-235 60-166 (323)
383 PRK07352 F0F1 ATP synthase sub 48.1 96 0.0021 30.3 8.5 31 576-606 46-76 (174)
384 CHL00019 atpF ATP synthase CF0 47.8 1.1E+02 0.0023 30.3 8.9 29 578-606 53-81 (184)
385 TIGR02680 conserved hypothetic 47.8 55 0.0012 42.7 8.5 68 568-635 256-324 (1353)
386 TIGR01010 BexC_CtrB_KpsE polys 47.6 49 0.0011 36.4 7.1 26 652-677 280-305 (362)
387 PF14197 Cep57_CLD_2: Centroso 47.6 1.3E+02 0.0028 25.0 7.7 53 584-636 9-61 (69)
388 cd00890 Prefoldin Prefoldin is 47.5 1.3E+02 0.0028 27.4 9.0 35 567-601 7-41 (129)
389 PF10211 Ax_dynein_light: Axon 47.3 94 0.002 31.0 8.4 28 574-601 128-155 (189)
390 PF04156 IncA: IncA protein; 47.3 1.2E+02 0.0027 29.8 9.3 59 577-635 92-150 (191)
391 TIGR01005 eps_transp_fam exopo 47.1 40 0.00088 41.0 6.9 19 583-601 197-215 (754)
392 PRK13453 F0F1 ATP synthase sub 47.0 1.8E+02 0.0039 28.4 10.2 30 577-606 46-75 (173)
393 TIGR02231 conserved hypothetic 46.8 1.4E+02 0.0029 34.8 10.9 26 613-638 129-154 (525)
394 KOG0289 mRNA splicing factor [ 46.2 4.8E+02 0.01 29.4 15.8 121 198-344 348-473 (506)
395 PRK06231 F0F1 ATP synthase sub 46.1 2.1E+02 0.0045 28.9 10.8 64 578-643 77-144 (205)
396 PF09744 Jnk-SapK_ap_N: JNK_SA 46.0 1E+02 0.0022 29.9 8.1 63 569-631 46-112 (158)
397 KOG4797 Transcriptional regula 45.9 22 0.00048 31.7 3.1 32 619-664 64-95 (123)
398 PF07106 TBPIP: Tat binding pr 45.9 67 0.0014 31.2 7.0 86 570-673 76-161 (169)
399 TIGR01005 eps_transp_fam exopo 45.8 1.3E+02 0.0027 36.7 10.9 26 654-679 380-405 (754)
400 PRK03598 putative efflux pump 45.5 78 0.0017 34.2 8.2 23 654-676 182-204 (331)
401 PRK07353 F0F1 ATP synthase sub 45.3 1.3E+02 0.0028 28.1 8.7 45 584-628 33-77 (140)
402 PF05557 MAD: Mitotic checkpoi 45.3 1.5E+02 0.0032 36.1 11.2 108 571-680 501-629 (722)
403 KOG0612 Rho-associated, coiled 45.1 1.2E+02 0.0026 38.2 10.1 92 587-678 487-581 (1317)
404 PF04012 PspA_IM30: PspA/IM30 45.0 1.1E+02 0.0024 31.0 8.7 65 578-643 89-153 (221)
405 KOG3856 Uncharacterized conser 44.8 27 0.00058 32.0 3.6 32 606-637 8-39 (135)
406 PF02994 Transposase_22: L1 tr 44.7 65 0.0014 35.7 7.4 67 594-670 144-221 (370)
407 PRK14474 F0F1 ATP synthase sub 44.7 61 0.0013 33.9 6.8 68 568-643 34-101 (250)
408 smart00742 Hr1 Rho effector or 44.6 91 0.002 24.5 6.3 49 584-632 5-56 (57)
409 PF09340 NuA4: Histone acetylt 44.6 48 0.001 28.3 5.0 42 602-649 3-44 (80)
410 PRK00409 recombination and DNA 44.6 78 0.0017 38.8 8.7 38 586-623 526-563 (782)
411 KOG0980 Actin-binding protein 44.4 62 0.0013 39.2 7.4 60 574-633 390-449 (980)
412 PRK10636 putative ABC transpor 44.2 41 0.00089 40.1 6.2 34 602-635 599-632 (638)
413 KOG4673 Transcription factor T 44.1 1E+02 0.0022 36.4 8.7 125 570-706 474-601 (961)
414 KOG0933 Structural maintenance 44.0 1.7E+02 0.0036 36.3 10.8 90 570-673 784-887 (1174)
415 PRK06231 F0F1 ATP synthase sub 43.9 81 0.0018 31.9 7.4 46 584-629 76-121 (205)
416 PF10960 DUF2762: Protein of u 43.9 59 0.0013 27.1 5.2 46 578-630 26-71 (71)
417 PRK14471 F0F1 ATP synthase sub 43.7 1.2E+02 0.0027 29.1 8.5 30 577-606 36-65 (164)
418 CHL00118 atpG ATP synthase CF0 43.7 1.5E+02 0.0032 28.4 9.0 28 577-604 50-77 (156)
419 PRK04406 hypothetical protein; 43.7 84 0.0018 26.5 6.2 53 619-706 8-60 (75)
420 PRK11032 hypothetical protein; 43.5 2.2E+02 0.0049 27.6 9.9 101 567-676 4-104 (160)
421 PF08606 Prp19: Prp19/Pso4-lik 43.4 1E+02 0.0022 25.6 6.4 50 570-619 19-68 (70)
422 KOG3850 Predicted membrane pro 43.0 64 0.0014 35.3 6.6 26 589-614 262-287 (455)
423 PRK10476 multidrug resistance 43.0 88 0.0019 34.0 8.2 66 573-638 138-203 (346)
424 PF15619 Lebercilin: Ciliary p 43.0 1.1E+02 0.0025 30.6 8.2 138 569-706 22-185 (194)
425 PRK15136 multidrug efflux syst 43.0 86 0.0019 34.9 8.2 22 655-676 195-216 (390)
426 PF12329 TMF_DNA_bd: TATA elem 42.9 41 0.00088 28.2 4.2 64 613-679 3-69 (74)
427 PRK15422 septal ring assembly 42.6 2.1E+02 0.0046 24.3 8.8 63 570-632 8-70 (79)
428 PF10146 zf-C4H2: Zinc finger- 42.5 1.3E+02 0.0028 31.1 8.7 20 653-672 84-103 (230)
429 PF14131 DUF4298: Domain of un 42.5 28 0.0006 30.4 3.3 49 610-658 2-50 (90)
430 PRK04778 septation ring format 42.4 1.1E+02 0.0024 35.9 9.4 40 602-641 377-416 (569)
431 COG2706 3-carboxymuconate cycl 42.4 4.9E+02 0.011 28.5 27.8 254 99-390 52-324 (346)
432 PF14583 Pectate_lyase22: Olig 42.4 3E+02 0.0065 30.7 11.9 135 113-269 167-303 (386)
433 PF07716 bZIP_2: Basic region 42.3 97 0.0021 24.0 6.0 26 610-635 27-52 (54)
434 KOG0999 Microtubule-associated 42.1 1.9E+02 0.0041 33.4 10.3 24 653-676 110-133 (772)
435 PRK05759 F0F1 ATP synthase sub 42.1 97 0.0021 29.5 7.4 34 591-624 39-72 (156)
436 TIGR02977 phageshock_pspA phag 41.9 1.5E+02 0.0032 30.3 9.1 46 592-637 90-135 (219)
437 PRK10920 putative uroporphyrin 41.9 1.3E+02 0.0028 33.6 9.2 133 574-708 61-213 (390)
438 KOG3478 Prefoldin subunit 6, K 41.5 2.2E+02 0.0049 25.7 8.6 39 598-636 73-111 (120)
439 PF15070 GOLGA2L5: Putative go 41.4 2E+02 0.0044 34.1 11.2 37 563-599 77-113 (617)
440 PRK04778 septation ring format 41.4 72 0.0016 37.5 7.5 58 573-630 282-339 (569)
441 PRK08476 F0F1 ATP synthase sub 41.1 1.5E+02 0.0033 28.0 8.4 25 568-592 36-60 (141)
442 PRK15422 septal ring assembly 40.9 1.4E+02 0.0031 25.3 7.0 58 568-625 20-77 (79)
443 PRK08475 F0F1 ATP synthase sub 40.6 1.6E+02 0.0035 28.6 8.7 65 577-643 50-118 (167)
444 PF05911 DUF869: Plant protein 40.5 2E+02 0.0044 35.0 11.1 71 583-674 88-165 (769)
445 PRK13460 F0F1 ATP synthase sub 40.2 1E+02 0.0022 30.2 7.3 43 584-626 44-86 (173)
446 PF05483 SCP-1: Synaptonemal c 40.2 2.7E+02 0.0059 33.0 11.4 73 595-678 353-426 (786)
447 PF06005 DUF904: Protein of un 40.1 2.2E+02 0.0048 23.8 8.5 28 596-623 6-33 (72)
448 PF07433 DUF1513: Protein of u 39.9 4.7E+02 0.01 28.2 12.6 117 246-374 2-121 (305)
449 KOG0976 Rho/Rac1-interacting s 39.9 1.2E+02 0.0027 36.3 8.7 37 646-682 486-522 (1265)
450 PRK09343 prefoldin subunit bet 39.9 1.9E+02 0.0042 26.5 8.6 43 573-615 7-49 (121)
451 PF06160 EzrA: Septation ring 39.8 91 0.002 36.6 8.0 59 598-656 369-431 (560)
452 PF05622 HOOK: HOOK protein; 39.6 9.7 0.00021 46.0 0.0 66 583-649 294-366 (713)
453 PF05557 MAD: Mitotic checkpoi 39.6 9.7 0.00021 46.1 0.0 54 654-707 189-245 (722)
454 PRK10929 putative mechanosensi 39.6 54 0.0012 41.5 6.3 110 591-709 45-161 (1109)
455 TIGR00998 8a0101 efflux pump m 39.4 1.2E+02 0.0026 32.6 8.5 21 655-675 184-204 (334)
456 cd07665 BAR_SNX1 The Bin/Amphi 39.2 52 0.0011 34.1 5.2 55 615-673 159-222 (234)
457 PF03148 Tektin: Tektin family 39.1 1.1E+02 0.0023 34.2 8.1 97 570-666 248-368 (384)
458 TIGR00570 cdk7 CDK-activating 39.0 1.4E+02 0.003 32.2 8.5 37 568-604 122-158 (309)
459 cd07643 I-BAR_IMD_MIM Inverse 38.9 96 0.0021 31.8 6.9 114 584-713 93-229 (231)
460 PF08581 Tup_N: Tup N-terminal 38.9 1.4E+02 0.0029 25.5 6.8 55 577-631 8-62 (79)
461 PF05278 PEARLI-4: Arabidopsis 38.8 98 0.0021 32.6 7.1 51 585-636 171-221 (269)
462 PRK10869 recombination and rep 38.8 1.6E+02 0.0035 34.5 9.9 89 568-686 301-392 (553)
463 PF09304 Cortex-I_coil: Cortex 38.8 46 0.001 29.9 4.1 68 594-675 9-76 (107)
464 PRK10865 protein disaggregatio 38.7 1.1E+02 0.0023 38.0 8.8 19 612-630 443-461 (857)
465 PF03961 DUF342: Protein of un 38.5 1.1E+02 0.0024 34.8 8.3 33 602-634 376-408 (451)
466 PRK13461 F0F1 ATP synthase sub 38.5 1.8E+02 0.004 27.8 8.7 36 590-625 39-74 (159)
467 COG4026 Uncharacterized protei 38.3 74 0.0016 32.3 5.8 58 574-631 150-207 (290)
468 PF12128 DUF3584: Protein of u 38.2 70 0.0015 41.2 7.3 10 505-514 546-555 (1201)
469 COG0013 AlaS Alanyl-tRNA synth 38.1 82 0.0018 38.7 7.3 124 572-695 688-823 (879)
470 PRK01156 chromosome segregatio 38.0 1.4E+02 0.0029 37.2 9.7 28 614-641 642-669 (895)
471 PF04380 BMFP: Membrane fusoge 37.9 2.4E+02 0.0052 23.9 8.2 29 608-636 47-78 (79)
472 PF13815 Dzip-like_N: Iguana/D 37.9 1.4E+02 0.003 27.3 7.3 62 565-631 55-117 (118)
473 PRK03947 prefoldin subunit alp 37.9 2.3E+02 0.005 26.5 9.1 34 568-601 15-48 (140)
474 PF05700 BCAS2: Breast carcino 37.7 1.7E+02 0.0036 29.9 8.7 81 577-671 133-217 (221)
475 PRK15178 Vi polysaccharide exp 37.7 1.6E+02 0.0034 33.4 9.0 59 575-633 281-339 (434)
476 PF04799 Fzo_mitofusin: fzo-li 37.5 1.1E+02 0.0023 30.1 6.7 49 612-671 117-165 (171)
477 KOG0263 Transcription initiati 37.5 2.5E+02 0.0054 33.5 10.8 105 207-334 545-650 (707)
478 KOG0971 Microtubule-associated 37.4 1.2E+02 0.0026 37.0 8.2 55 572-626 961-1015(1243)
479 PRK12704 phosphodiesterase; Pr 37.4 2.5E+02 0.0054 32.7 10.9 94 573-677 37-137 (520)
480 PF13870 DUF4201: Domain of un 37.2 2.3E+02 0.0051 27.6 9.4 49 569-617 80-128 (177)
481 COG5019 CDC3 Septin family pro 37.2 87 0.0019 34.5 6.7 52 567-635 318-369 (373)
482 COG0216 PrfA Protein chain rel 37.2 91 0.002 33.8 6.6 88 587-674 7-100 (363)
483 KOG0291 WD40-repeat-containing 37.1 8.4E+02 0.018 29.6 22.8 147 208-390 319-469 (893)
484 KOG3859 Septins (P-loop GTPase 37.0 2.4E+02 0.0051 30.1 9.4 73 563-635 316-404 (406)
485 TIGR01144 ATP_synt_b ATP synth 36.8 3.4E+02 0.0074 25.4 10.2 29 578-606 24-52 (147)
486 PF15525 DUF4652: Domain of un 36.8 4.5E+02 0.0097 26.4 11.5 68 170-240 85-156 (200)
487 KOG0316 Conserved WD40 repeat- 36.7 3.2E+02 0.007 28.4 10.1 108 153-286 67-176 (307)
488 PRK13453 F0F1 ATP synthase sub 36.7 1.2E+02 0.0027 29.6 7.3 35 590-624 52-86 (173)
489 PF10168 Nup88: Nuclear pore c 36.6 1.7E+02 0.0037 35.5 9.7 50 584-633 569-618 (717)
490 PF05164 ZapA: Cell division p 36.6 1.6E+02 0.0034 24.9 7.2 62 568-631 27-88 (89)
491 PF11559 ADIP: Afadin- and alp 36.5 2.3E+02 0.0051 26.8 9.0 23 612-634 77-99 (151)
492 KOG0963 Transcription factor/C 36.5 1.5E+02 0.0031 34.8 8.6 28 572-599 248-275 (629)
493 PRK10698 phage shock protein P 36.4 1.3E+02 0.0029 30.8 7.7 76 576-652 88-163 (222)
494 PRK14127 cell division protein 36.4 93 0.002 28.2 5.7 42 595-636 24-65 (109)
495 COG3391 Uncharacterized conser 36.3 6.3E+02 0.014 27.9 22.4 201 98-336 85-286 (381)
496 TIGR02449 conserved hypothetic 36.1 2.4E+02 0.0051 23.2 7.4 60 569-635 3-62 (65)
497 KOG0978 E3 ubiquitin ligase in 35.9 1.5E+02 0.0033 35.4 8.9 106 571-683 529-636 (698)
498 KOG0018 Structural maintenance 35.9 1.7E+02 0.0037 36.4 9.4 113 568-680 340-474 (1141)
499 KOG2856 Adaptor protein PACSIN 35.9 2E+02 0.0043 31.6 8.9 68 590-677 177-251 (472)
500 PRK10476 multidrug resistance 35.8 1.4E+02 0.003 32.5 8.3 130 569-709 82-214 (346)
No 1
>PLN02193 nitrile-specifier protein
Probab=100.00 E-value=1.7e-42 Score=391.39 Aligned_cols=336 Identities=19% Similarity=0.300 Sum_probs=267.1
Q ss_pred CCCEEEEEcCCCCCCCCccccccccccCCCCCCCCCeEEeeecCCCCCCcceeEEEEECCEEEEEcccCC-CC-CcccEE
Q 005043 40 NSECVAPSSNHADDRDCECTIAGPEVSNGTSGNSENWMVLSIAGDKPIPRFNHAAAVIGNKMIVVGGESG-NG-LLDDVQ 117 (717)
Q Consensus 40 ~~~~i~l~GG~~~~~~~~~~~~~~~~~~~~~~~s~~W~~l~~~g~~P~~R~~haav~~~~~lyV~GG~~~-~~-~~~~v~ 117 (717)
.+..|+.|+|+..+.. ....+|..........++|..++..+.+|.||.+|++++++++||||||... .. ..+++|
T Consensus 119 ~~~~ivgf~G~~~~~~--~~ig~y~~~~~~~~~~~~W~~~~~~~~~P~pR~~h~~~~~~~~iyv~GG~~~~~~~~~~~v~ 196 (470)
T PLN02193 119 QGGKIVGFHGRSTDVL--HSLGAYISLPSTPKLLGKWIKVEQKGEGPGLRCSHGIAQVGNKIYSFGGEFTPNQPIDKHLY 196 (470)
T ss_pred cCCeEEEEeccCCCcE--EeeEEEEecCCChhhhceEEEcccCCCCCCCccccEEEEECCEEEEECCcCCCCCCeeCcEE
Confidence 3677899999766541 2222232211111124899999876678999999999999999999999753 22 347899
Q ss_pred EEEcCCCceEEccccccCCCCCCCCCCCcccceEEEEECCEEEEEeccCCCCCCceEEEEEECCCCcEEEeeecCCCCCC
Q 005043 118 VLNFDRFSWTAASSKLYLSPSSLPLKIPACRGHSLISWGKKVLLVGGKTDSGSDRVSVWTFDTETECWSVVEAKGDIPVA 197 (717)
Q Consensus 118 ~yd~~t~~W~~l~~~~~~~~~~~~~~~p~r~~hs~v~~~~~Iyv~GG~~~~~~~~~~v~~yD~~t~~W~~l~~~g~~P~~ 197 (717)
+||+.+++|..++++.. .|.++|.+|++++++++||||||... ....+++|+||+.+++|+.+++.+..|.+
T Consensus 197 ~yD~~~~~W~~~~~~g~-------~P~~~~~~~~~v~~~~~lYvfGG~~~-~~~~ndv~~yD~~t~~W~~l~~~~~~P~~ 268 (470)
T PLN02193 197 VFDLETRTWSISPATGD-------VPHLSCLGVRMVSIGSTLYVFGGRDA-SRQYNGFYSFDTTTNEWKLLTPVEEGPTP 268 (470)
T ss_pred EEECCCCEEEeCCCCCC-------CCCCcccceEEEEECCEEEEECCCCC-CCCCccEEEEECCCCEEEEcCcCCCCCCC
Confidence 99999999998765311 22234668999999999999999864 34578999999999999999875555899
Q ss_pred ceeeEEEEECCEEEEEccccCCCCCcCcEEEEEcCCCceEeccCCCCCCCCCcccEEEEECCcEEEEEcCCCCCCCCCeE
Q 005043 198 RSGHTVVRASSVLILFGGEDGKRRKLNDLHMFDLKSLTWLPLHCTGTGPSPRSNHVAALYDDKNLLIFGGSSKSKTLNDL 277 (717)
Q Consensus 198 R~~hs~~~~~~~Lyv~GG~~~~~~~~~~v~~yD~~t~~W~~l~~~g~~P~~R~~~aa~~~~~~~lyV~GG~~~~~~~ndv 277 (717)
|+.|+++.++++||||||.+.. ..++++++||+.+++|+.++..+.+|.+|..|++++++++ |||+||.++. ..+++
T Consensus 269 R~~h~~~~~~~~iYv~GG~~~~-~~~~~~~~yd~~t~~W~~~~~~~~~~~~R~~~~~~~~~gk-iyviGG~~g~-~~~dv 345 (470)
T PLN02193 269 RSFHSMAADEENVYVFGGVSAT-ARLKTLDSYNIVDKKWFHCSTPGDSFSIRGGAGLEVVQGK-VWVVYGFNGC-EVDDV 345 (470)
T ss_pred ccceEEEEECCEEEEECCCCCC-CCcceEEEEECCCCEEEeCCCCCCCCCCCCCcEEEEECCc-EEEEECCCCC-ccCce
Confidence 9999999999999999999765 4678999999999999999876778899999999999988 9999998654 46899
Q ss_pred EEEECCCCcEEEeecCCCCCCCCcceEEEEECCEEEEEecCCC---------CCccCeEEEEECCCCcEEEeecCCC--C
Q 005043 278 YSLDFETMIWTRIKIRGFHPSPRAGCCGVLCGTKWYIAGGGSR---------KKRHAETLIFDILKGEWSVAITSPS--S 346 (717)
Q Consensus 278 ~~yd~~t~~W~~v~~~g~~P~~R~~~sav~~~~~IyV~GG~~~---------~~~~~dv~~yD~~t~~W~~l~~~p~--~ 346 (717)
++||+.+++|+.+...+..|.+|..|+++.++++|||+||... ....+++|+||+.+++|+.+...+. .
T Consensus 346 ~~yD~~t~~W~~~~~~g~~P~~R~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~ndv~~~D~~t~~W~~~~~~~~~~~ 425 (470)
T PLN02193 346 HYYDPVQDKWTQVETFGVRPSERSVFASAAVGKHIVIFGGEIAMDPLAHVGPGQLTDGTFALDTETLQWERLDKFGEEEE 425 (470)
T ss_pred EEEECCCCEEEEeccCCCCCCCcceeEEEEECCEEEEECCccCCccccccCccceeccEEEEEcCcCEEEEcccCCCCCC
Confidence 9999999999999887778999999999999999999999753 1245789999999999999875432 3
Q ss_pred CCCCCcceEEEEEEeCCCcEEEEEcCCCC--CCCCeEEEEEccC
Q 005043 347 SVTSNKGFTLVLVQHKEKDFLVAFGGIKK--EPSNQVEVLSIEK 388 (717)
Q Consensus 347 ~~~~r~g~s~v~v~~~~~~~I~v~GG~~~--~~~n~v~vyd~~~ 388 (717)
.|.+|..++++.....+++.|++|||+.. ...+|+|.|++++
T Consensus 426 ~P~~R~~~~~~~~~~~~~~~~~~fGG~~~~~~~~~D~~~~~~~~ 469 (470)
T PLN02193 426 TPSSRGWTASTTGTIDGKKGLVMHGGKAPTNDRFDDLFFYGIDS 469 (470)
T ss_pred CCCCCccccceeeEEcCCceEEEEcCCCCccccccceEEEecCC
Confidence 45677666554433334567999999964 4489999998765
No 2
>PLN02153 epithiospecifier protein
Probab=100.00 E-value=8.4e-41 Score=363.45 Aligned_cols=305 Identities=20% Similarity=0.363 Sum_probs=244.3
Q ss_pred CCCCeEEeeec-CCCCCCcceeEEEEECCEEEEEcccCC--CCCcccEEEEEcCCCceEEccccccCCCCCCCCCCCccc
Q 005043 72 NSENWMVLSIA-GDKPIPRFNHAAAVIGNKMIVVGGESG--NGLLDDVQVLNFDRFSWTAASSKLYLSPSSLPLKIPACR 148 (717)
Q Consensus 72 ~s~~W~~l~~~-g~~P~~R~~haav~~~~~lyV~GG~~~--~~~~~~v~~yd~~t~~W~~l~~~~~~~~~~~~~~~p~r~ 148 (717)
....|..+... +.+|.||.+|++++++++|||+||... ....+++|+||+.+++|..++++.. .+.+.+.
T Consensus 5 ~~~~W~~~~~~~~~~P~pR~~h~~~~~~~~iyv~GG~~~~~~~~~~~~~~yd~~~~~W~~~~~~~~-------~p~~~~~ 77 (341)
T PLN02153 5 LQGGWIKVEQKGGKGPGPRCSHGIAVVGDKLYSFGGELKPNEHIDKDLYVFDFNTHTWSIAPANGD-------VPRISCL 77 (341)
T ss_pred cCCeEEEecCCCCCCCCCCCcceEEEECCEEEEECCccCCCCceeCcEEEEECCCCEEEEcCccCC-------CCCCccC
Confidence 56779999763 357899999999999999999999853 2346899999999999999887410 1122345
Q ss_pred ceEEEEECCEEEEEeccCCCCCCceEEEEEECCCCcEEEeeec--CCCCCCceeeEEEEECCEEEEEccccCCC-----C
Q 005043 149 GHSLISWGKKVLLVGGKTDSGSDRVSVWTFDTETECWSVVEAK--GDIPVARSGHTVVRASSVLILFGGEDGKR-----R 221 (717)
Q Consensus 149 ~hs~v~~~~~Iyv~GG~~~~~~~~~~v~~yD~~t~~W~~l~~~--g~~P~~R~~hs~~~~~~~Lyv~GG~~~~~-----~ 221 (717)
+|++++++++||||||.... ...+++++||+.+++|+.+++. ...|.+|..|++++++++|||+||.+..+ .
T Consensus 78 ~~~~~~~~~~iyv~GG~~~~-~~~~~v~~yd~~t~~W~~~~~~~~~~~p~~R~~~~~~~~~~~iyv~GG~~~~~~~~~~~ 156 (341)
T PLN02153 78 GVRMVAVGTKLYIFGGRDEK-REFSDFYSYDTVKNEWTFLTKLDEEGGPEARTFHSMASDENHVYVFGGVSKGGLMKTPE 156 (341)
T ss_pred ceEEEEECCEEEEECCCCCC-CccCcEEEEECCCCEEEEeccCCCCCCCCCceeeEEEEECCEEEEECCccCCCccCCCc
Confidence 78999999999999998643 3467899999999999998742 12388999999999999999999986432 2
Q ss_pred CcCcEEEEEcCCCceEeccCCCCCCCCCcccEEEEECCcEEEEEcCCCC--------CCCCCeEEEEECCCCcEEEeecC
Q 005043 222 KLNDLHMFDLKSLTWLPLHCTGTGPSPRSNHVAALYDDKNLLIFGGSSK--------SKTLNDLYSLDFETMIWTRIKIR 293 (717)
Q Consensus 222 ~~~~v~~yD~~t~~W~~l~~~g~~P~~R~~~aa~~~~~~~lyV~GG~~~--------~~~~ndv~~yd~~t~~W~~v~~~ 293 (717)
.++++++||+.+++|+.++..+..|.+|.+|++++++++ |||+||... ....+++++||+.+++|+.+...
T Consensus 157 ~~~~v~~yd~~~~~W~~l~~~~~~~~~r~~~~~~~~~~~-iyv~GG~~~~~~~gG~~~~~~~~v~~yd~~~~~W~~~~~~ 235 (341)
T PLN02153 157 RFRTIEAYNIADGKWVQLPDPGENFEKRGGAGFAVVQGK-IWVVYGFATSILPGGKSDYESNAVQFFDPASGKWTEVETT 235 (341)
T ss_pred ccceEEEEECCCCeEeeCCCCCCCCCCCCcceEEEECCe-EEEEeccccccccCCccceecCceEEEEcCCCcEEecccc
Confidence 457899999999999999866666789999999999998 999998642 12367899999999999999887
Q ss_pred CCCCCCCcceEEEEECCEEEEEecCCC---------CCccCeEEEEECCCCcEEEeecCC-CCCCCCCcceEEEEEEeCC
Q 005043 294 GFHPSPRAGCCGVLCGTKWYIAGGGSR---------KKRHAETLIFDILKGEWSVAITSP-SSSVTSNKGFTLVLVQHKE 363 (717)
Q Consensus 294 g~~P~~R~~~sav~~~~~IyV~GG~~~---------~~~~~dv~~yD~~t~~W~~l~~~p-~~~~~~r~g~s~v~v~~~~ 363 (717)
+.+|.+|..|++++++++||||||... ....+++|+||+.+++|+.+.... ++.|..+.+++++.+. +
T Consensus 236 g~~P~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~n~v~~~d~~~~~W~~~~~~~~~~~pr~~~~~~~~~v~--~ 313 (341)
T PLN02153 236 GAKPSARSVFAHAVVGKYIIIFGGEVWPDLKGHLGPGTLSNEGYALDTETLVWEKLGECGEPAMPRGWTAYTTATVY--G 313 (341)
T ss_pred CCCCCCcceeeeEEECCEEEEECcccCCccccccccccccccEEEEEcCccEEEeccCCCCCCCCCccccccccccC--C
Confidence 778999999999999999999999742 234579999999999999986421 1334455555666554 3
Q ss_pred CcEEEEEcCCCCC--CCCeEEEEEcc
Q 005043 364 KDFLVAFGGIKKE--PSNQVEVLSIE 387 (717)
Q Consensus 364 ~~~I~v~GG~~~~--~~n~v~vyd~~ 387 (717)
++.||||||..+. ..+++|+|++.
T Consensus 314 ~~~~~~~gG~~~~~~~~~~~~~~~~~ 339 (341)
T PLN02153 314 KNGLLMHGGKLPTNERTDDLYFYAVN 339 (341)
T ss_pred cceEEEEcCcCCCCccccceEEEecc
Confidence 5689999999653 48999999864
No 3
>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]
Probab=100.00 E-value=1.2e-40 Score=381.91 Aligned_cols=290 Identities=24% Similarity=0.357 Sum_probs=257.6
Q ss_pred ccccCCCCCCCCCCccCCC--CCEEEEEcCCCCCCCCccccccccccCCCCCCCCCeEEeeecCCCCCCcceeEEEEECC
Q 005043 22 SAQAIRSPIRPPKRNSNPN--SECVAPSSNHADDRDCECTIAGPEVSNGTSGNSENWMVLSIAGDKPIPRFNHAAAVIGN 99 (717)
Q Consensus 22 ~~~~~~~p~~~~~r~s~~~--~~~i~l~GG~~~~~~~~~~~~~~~~~~~~~~~s~~W~~l~~~g~~P~~R~~haav~~~~ 99 (717)
+..+..+|.++.+|+..+. .+.|+++||.............|++ .++.|..++ ++|.+|..+++++++|
T Consensus 263 ~~~~~~~~~~~~~~t~~r~~~~~~l~~vGG~~~~~~~~~~ve~yd~------~~~~w~~~a---~m~~~r~~~~~~~~~~ 333 (571)
T KOG4441|consen 263 HLLPQRRPVMQSPRTRPRRSVSGKLVAVGGYNRQGQSLRSVECYDP------KTNEWSSLA---PMPSPRCRVGVAVLNG 333 (571)
T ss_pred hhCcccCccccCCCcccCcCCCCeEEEECCCCCCCcccceeEEecC------CcCcEeecC---CCCcccccccEEEECC
Confidence 3444555556667766663 5669999997764444444555666 888999998 9999999999999999
Q ss_pred EEEEEcccC-CCCCcccEEEEEcCCCceEEccccccCCCCCCCCCCCcccceEEEEECCEEEEEeccCCCCCCceEEEEE
Q 005043 100 KMIVVGGES-GNGLLDDVQVLNFDRFSWTAASSKLYLSPSSLPLKIPACRGHSLISWGKKVLLVGGKTDSGSDRVSVWTF 178 (717)
Q Consensus 100 ~lyV~GG~~-~~~~~~~v~~yd~~t~~W~~l~~~~~~~~~~~~~~~p~r~~hs~v~~~~~Iyv~GG~~~~~~~~~~v~~y 178 (717)
+||++||++ +...++++|+||+.+++|..+++| ..+|.+++++++++.||++||.+ +....+++++|
T Consensus 334 ~lYv~GG~~~~~~~l~~ve~YD~~~~~W~~~a~M-----------~~~R~~~~v~~l~g~iYavGG~d-g~~~l~svE~Y 401 (571)
T KOG4441|consen 334 KLYVVGGYDSGSDRLSSVERYDPRTNQWTPVAPM-----------NTKRSDFGVAVLDGKLYAVGGFD-GEKSLNSVECY 401 (571)
T ss_pred EEEEEccccCCCcccceEEEecCCCCceeccCCc-----------cCccccceeEEECCEEEEEeccc-cccccccEEEe
Confidence 999999999 678899999999999999999986 45778999999999999999997 55668899999
Q ss_pred ECCCCcEEEeeecCCCCCCceeeEEEEECCEEEEEccccCCCCCcCcEEEEEcCCCceEeccCCCCCCCCCcccEEEEEC
Q 005043 179 DTETECWSVVEAKGDIPVARSGHTVVRASSVLILFGGEDGKRRKLNDLHMFDLKSLTWLPLHCTGTGPSPRSNHVAALYD 258 (717)
Q Consensus 179 D~~t~~W~~l~~~g~~P~~R~~hs~~~~~~~Lyv~GG~~~~~~~~~~v~~yD~~t~~W~~l~~~g~~P~~R~~~aa~~~~ 258 (717)
|+.+++|+.+++ |+.+|++|++++++++||++||.++....++.+++|||.+++|+.++ +|+.+|.++++++++
T Consensus 402 Dp~~~~W~~va~---m~~~r~~~gv~~~~g~iYi~GG~~~~~~~l~sve~YDP~t~~W~~~~---~M~~~R~~~g~a~~~ 475 (571)
T KOG4441|consen 402 DPVTNKWTPVAP---MLTRRSGHGVAVLGGKLYIIGGGDGSSNCLNSVECYDPETNTWTLIA---PMNTRRSGFGVAVLN 475 (571)
T ss_pred cCCCCcccccCC---CCcceeeeEEEEECCEEEEEcCcCCCccccceEEEEcCCCCceeecC---CcccccccceEEEEC
Confidence 999999999984 89999999999999999999999988668999999999999999998 999999999999999
Q ss_pred CcEEEEEcCCCCCCCCCeEEEEECCCCcEEEeecCCCCCCCCcceEEEEECCEEEEEecCCCCCccCeEEEEECCCCcEE
Q 005043 259 DKNLLIFGGSSKSKTLNDLYSLDFETMIWTRIKIRGFHPSPRAGCCGVLCGTKWYIAGGGSRKKRHAETLIFDILKGEWS 338 (717)
Q Consensus 259 ~~~lyV~GG~~~~~~~ndv~~yd~~t~~W~~v~~~g~~P~~R~~~sav~~~~~IyV~GG~~~~~~~~dv~~yD~~t~~W~ 338 (717)
++ ||++||+++...+..+++|||.+++|+.+..+ +.+|..++++.+++++|++||+++...++.+.+|||.+++|+
T Consensus 476 ~~-iYvvGG~~~~~~~~~VE~ydp~~~~W~~v~~m---~~~rs~~g~~~~~~~ly~vGG~~~~~~l~~ve~ydp~~d~W~ 551 (571)
T KOG4441|consen 476 GK-IYVVGGFDGTSALSSVERYDPETNQWTMVAPM---TSPRSAVGVVVLGGKLYAVGGFDGNNNLNTVECYDPETDTWT 551 (571)
T ss_pred CE-EEEECCccCCCccceEEEEcCCCCceeEcccC---ccccccccEEEECCEEEEEecccCccccceeEEcCCCCCcee
Confidence 99 99999998877788899999999999999665 889999999999999999999999999999999999999999
Q ss_pred Eeec
Q 005043 339 VAIT 342 (717)
Q Consensus 339 ~l~~ 342 (717)
....
T Consensus 552 ~~~~ 555 (571)
T KOG4441|consen 552 EVTE 555 (571)
T ss_pred eCCC
Confidence 9863
No 4
>KOG4693 consensus Uncharacterized conserved protein, contains kelch repeat [General function prediction only]
Probab=100.00 E-value=8.7e-40 Score=323.23 Aligned_cols=337 Identities=26% Similarity=0.429 Sum_probs=279.2
Q ss_pred CeEEeeecCCCCCCcceeEEEEECCEEEEEcccCCCC-----CcccEEEEEcCCCceEEccccc--cCCCCCCCCCCCcc
Q 005043 75 NWMVLSIAGDKPIPRFNHAAAVIGNKMIVVGGESGNG-----LLDDVQVLNFDRFSWTAASSKL--YLSPSSLPLKIPAC 147 (717)
Q Consensus 75 ~W~~l~~~g~~P~~R~~haav~~~~~lyV~GG~~~~~-----~~~~v~~yd~~t~~W~~l~~~~--~~~~~~~~~~~p~r 147 (717)
.|+.-- .--+.|.+|+++.++.+||-|||+.... ..-||.++|..+..|+.+++.. ...+...|.-+-.|
T Consensus 3 ~WTVHL---eGGPrRVNHAavaVG~riYSFGGYCsGedy~~~~piDVH~lNa~~~RWtk~pp~~~ka~i~~~yp~VPyqR 79 (392)
T KOG4693|consen 3 TWTVHL---EGGPRRVNHAAVAVGSRIYSFGGYCSGEDYDAKDPIDVHVLNAENYRWTKMPPGITKATIESPYPAVPYQR 79 (392)
T ss_pred eEEEEe---cCCcccccceeeeecceEEecCCcccccccccCCcceeEEeeccceeEEecCcccccccccCCCCccchhh
Confidence 366543 2345799999999999999999974332 2348999999999999999832 23344445556688
Q ss_pred cceEEEEECCEEEEEeccCCCCCCceEEEEEECCCCcEEEeeecCCCCCCceeeEEEEECCEEEEEccccCC-CCCcCcE
Q 005043 148 RGHSLISWGKKVLLVGGKTDSGSDRVSVWTFDTETECWSVVEAKGDIPVARSGHTVVRASSVLILFGGEDGK-RRKLNDL 226 (717)
Q Consensus 148 ~~hs~v~~~~~Iyv~GG~~~~~~~~~~v~~yD~~t~~W~~l~~~g~~P~~R~~hs~~~~~~~Lyv~GG~~~~-~~~~~~v 226 (717)
++|+.+.+++++||.||.++.....|.++.||++++.|.+....|-+|.+|.+|++|++++.+|||||+... ..+++++
T Consensus 80 YGHtvV~y~d~~yvWGGRND~egaCN~Ly~fDp~t~~W~~p~v~G~vPgaRDGHsAcV~gn~MyiFGGye~~a~~FS~d~ 159 (392)
T KOG4693|consen 80 YGHTVVEYQDKAYVWGGRNDDEGACNLLYEFDPETNVWKKPEVEGFVPGARDGHSACVWGNQMYIFGGYEEDAQRFSQDT 159 (392)
T ss_pred cCceEEEEcceEEEEcCccCcccccceeeeeccccccccccceeeecCCccCCceeeEECcEEEEecChHHHHHhhhccc
Confidence 999999999999999999987777889999999999999999889999999999999999999999999653 4578999
Q ss_pred EEEEcCCCceEeccCCCCCCCCCcccEEEEECCcEEEEEcCCCC---------CCCCCeEEEEECCCCcEEEeecCCCCC
Q 005043 227 HMFDLKSLTWLPLHCTGTGPSPRSNHVAALYDDKNLLIFGGSSK---------SKTLNDLYSLDFETMIWTRIKIRGFHP 297 (717)
Q Consensus 227 ~~yD~~t~~W~~l~~~g~~P~~R~~~aa~~~~~~~lyV~GG~~~---------~~~~ndv~~yd~~t~~W~~v~~~g~~P 297 (717)
+.+|+.|.+|+.+.++|..|.-|..|+++++++. +|||||.+. ..+.+.|..+|+.|+.|.+.+..+..|
T Consensus 160 h~ld~~TmtWr~~~Tkg~PprwRDFH~a~~~~~~-MYiFGGR~D~~gpfHs~~e~Yc~~i~~ld~~T~aW~r~p~~~~~P 238 (392)
T KOG4693|consen 160 HVLDFATMTWREMHTKGDPPRWRDFHTASVIDGM-MYIFGGRSDESGPFHSIHEQYCDTIMALDLATGAWTRTPENTMKP 238 (392)
T ss_pred eeEeccceeeeehhccCCCchhhhhhhhhhccce-EEEeccccccCCCccchhhhhcceeEEEeccccccccCCCCCcCC
Confidence 9999999999999999999999999999999977 999999853 246788999999999999999888899
Q ss_pred CCCcceEEEEECCEEEEEecCCCC--CccCeEEEEECCCCcEEEeecCCCCCCCCCcceEEEEEEeCCCcEEEEEcCCCC
Q 005043 298 SPRAGCCGVLCGTKWYIAGGGSRK--KRHAETLIFDILKGEWSVAITSPSSSVTSNKGFTLVLVQHKEKDFLVAFGGIKK 375 (717)
Q Consensus 298 ~~R~~~sav~~~~~IyV~GG~~~~--~~~~dv~~yD~~t~~W~~l~~~p~~~~~~r~g~s~v~v~~~~~~~I~v~GG~~~ 375 (717)
.+|..|++.+.++++|||||+.+. .-.+++|+|||.+..|+.+.. ....|.+|..+++++. ++++|+|||...
T Consensus 239 ~GRRSHS~fvYng~~Y~FGGYng~ln~HfndLy~FdP~t~~W~~I~~-~Gk~P~aRRRqC~~v~----g~kv~LFGGTsP 313 (392)
T KOG4693|consen 239 GGRRSHSTFVYNGKMYMFGGYNGTLNVHFNDLYCFDPKTSMWSVISV-RGKYPSARRRQCSVVS----GGKVYLFGGTSP 313 (392)
T ss_pred CcccccceEEEcceEEEecccchhhhhhhcceeecccccchheeeec-cCCCCCcccceeEEEE----CCEEEEecCCCC
Confidence 999999999999999999999864 457899999999999999864 4566788888888888 789999999643
Q ss_pred CCCCeEEEEEccCCcccCccccccCCCCCcEEEEeeCCCCCCcccccCCCCCCCCCchhhhhhhHHHHhhcCCCCccccc
Q 005043 376 EPSNQVEVLSIEKNESSMGRRSTPNAKGPGQLLFEKRSSSTGLACQLGNGAPQRSVDSVARQNLASAIEQHGSGRKSLSE 455 (717)
Q Consensus 376 ~~~n~v~vyd~~~~eW~~~w~~~~~~~~p~~~~fgG~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~~~~~~~~~l~~ 455 (717)
.+ .+..+. . . +. . + - +..++.++||
T Consensus 314 ~~-----------------~~~~Sp--t-----------------~-------~~-G------~----~-~~~~LiD~SD 338 (392)
T KOG4693|consen 314 LP-----------------CHPLSP--T-----------------N-------YN-G------M----I-SPSGLIDLSD 338 (392)
T ss_pred CC-----------------CCCCCc--c-----------------c-------cC-C------C----C-Cccccccccc
Confidence 22 111101 0 0 00 0 0 0 3466899999
Q ss_pred cccCCCCCCCCCcchhhhch
Q 005043 456 FALVDPNPISGNVSLGKQFQ 475 (717)
Q Consensus 456 ~~~~~~~~~~~~~~~r~~~~ 475 (717)
.++||+.|+|+++++.-.++
T Consensus 339 LHvLDF~PsLKTLa~~~Vl~ 358 (392)
T KOG4693|consen 339 LHVLDFAPSLKTLAMQSVLM 358 (392)
T ss_pred ceeeecChhHHHHHHHHHHH
Confidence 99999999999999887664
No 5
>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]
Probab=100.00 E-value=2.4e-39 Score=371.06 Aligned_cols=279 Identities=24% Similarity=0.359 Sum_probs=246.9
Q ss_pred CCCCcceeEEEEECCEEEEEcccCC-CCCcccEEEEEcCCCceEEccccccCCCCCCCCCCCcccceEEEEECCEEEEEe
Q 005043 85 KPIPRFNHAAAVIGNKMIVVGGESG-NGLLDDVQVLNFDRFSWTAASSKLYLSPSSLPLKIPACRGHSLISWGKKVLLVG 163 (717)
Q Consensus 85 ~P~~R~~haav~~~~~lyV~GG~~~-~~~~~~v~~yd~~t~~W~~l~~~~~~~~~~~~~~~p~r~~hs~v~~~~~Iyv~G 163 (717)
++.+|..... ...+.||++||..+ ....+.+..||+.++.|..++++ + .+|..++++++++.||++|
T Consensus 272 ~~~~~t~~r~-~~~~~l~~vGG~~~~~~~~~~ve~yd~~~~~w~~~a~m----------~-~~r~~~~~~~~~~~lYv~G 339 (571)
T KOG4441|consen 272 MQSPRTRPRR-SVSGKLVAVGGYNRQGQSLRSVECYDPKTNEWSSLAPM----------P-SPRCRVGVAVLNGKLYVVG 339 (571)
T ss_pred ccCCCcccCc-CCCCeEEEECCCCCCCcccceeEEecCCcCcEeecCCC----------C-cccccccEEEECCEEEEEc
Confidence 3444443332 45688999999986 56789999999999999999984 3 4556899999999999999
Q ss_pred ccCCCCCCceEEEEEECCCCcEEEeeecCCCCCCceeeEEEEECCEEEEEccccCCCCCcCcEEEEEcCCCceEeccCCC
Q 005043 164 GKTDSGSDRVSVWTFDTETECWSVVEAKGDIPVARSGHTVVRASSVLILFGGEDGKRRKLNDLHMFDLKSLTWLPLHCTG 243 (717)
Q Consensus 164 G~~~~~~~~~~v~~yD~~t~~W~~l~~~g~~P~~R~~hs~~~~~~~Lyv~GG~~~~~~~~~~v~~yD~~t~~W~~l~~~g 243 (717)
|++.+....+++|+||+.+++|+.++ +|+.+|.++++++++|.||++||.++. ..++++++|||.+++|+.+.
T Consensus 340 G~~~~~~~l~~ve~YD~~~~~W~~~a---~M~~~R~~~~v~~l~g~iYavGG~dg~-~~l~svE~YDp~~~~W~~va--- 412 (571)
T KOG4441|consen 340 GYDSGSDRLSSVERYDPRTNQWTPVA---PMNTKRSDFGVAVLDGKLYAVGGFDGE-KSLNSVECYDPVTNKWTPVA--- 412 (571)
T ss_pred cccCCCcccceEEEecCCCCceeccC---CccCccccceeEEECCEEEEEeccccc-cccccEEEecCCCCcccccC---
Confidence 99755567889999999999999988 499999999999999999999999976 57899999999999999997
Q ss_pred CCCCCCcccEEEEECCcEEEEEcCCCCCC-CCCeEEEEECCCCcEEEeecCCCCCCCCcceEEEEECCEEEEEecCCCCC
Q 005043 244 TGPSPRSNHVAALYDDKNLLIFGGSSKSK-TLNDLYSLDFETMIWTRIKIRGFHPSPRAGCCGVLCGTKWYIAGGGSRKK 322 (717)
Q Consensus 244 ~~P~~R~~~aa~~~~~~~lyV~GG~~~~~-~~ndv~~yd~~t~~W~~v~~~g~~P~~R~~~sav~~~~~IyV~GG~~~~~ 322 (717)
+|+.+|++|++++++++ ||++||.++.. .++.+++|||.+++|+.++++ +.+|.++++++++++||++||+++..
T Consensus 413 ~m~~~r~~~gv~~~~g~-iYi~GG~~~~~~~l~sve~YDP~t~~W~~~~~M---~~~R~~~g~a~~~~~iYvvGG~~~~~ 488 (571)
T KOG4441|consen 413 PMLTRRSGHGVAVLGGK-LYIIGGGDGSSNCLNSVECYDPETNTWTLIAPM---NTRRSGFGVAVLNGKIYVVGGFDGTS 488 (571)
T ss_pred CCCcceeeeEEEEECCE-EEEEcCcCCCccccceEEEEcCCCCceeecCCc---ccccccceEEEECCEEEEECCccCCC
Confidence 89999999999999999 99999998776 999999999999999999876 89999999999999999999999866
Q ss_pred ccCeEEEEECCCCcEEEeecCCCCCCCCCcceEEEEEEeCCCcEEEEEcCCCCCC-CCeEEEEEccCCcccCc
Q 005043 323 RHAETLIFDILKGEWSVAITSPSSSVTSNKGFTLVLVQHKEKDFLVAFGGIKKEP-SNQVEVLSIEKNESSMG 394 (717)
Q Consensus 323 ~~~dv~~yD~~t~~W~~l~~~p~~~~~~r~g~s~v~v~~~~~~~I~v~GG~~~~~-~n~v~vyd~~~~eW~~~ 394 (717)
....+.+|||.+++|+.++ + +..+|.+++++++ ++.||++||+++.. ++.|++|||.+++|...
T Consensus 489 ~~~~VE~ydp~~~~W~~v~--~--m~~~rs~~g~~~~----~~~ly~vGG~~~~~~l~~ve~ydp~~d~W~~~ 553 (571)
T KOG4441|consen 489 ALSSVERYDPETNQWTMVA--P--MTSPRSAVGVVVL----GGKLYAVGGFDGNNNLNTVECYDPETDTWTEV 553 (571)
T ss_pred ccceEEEEcCCCCceeEcc--c--CccccccccEEEE----CCEEEEEecccCccccceeEEcCCCCCceeeC
Confidence 6778999999999999986 3 3457888888888 89999999998765 99999999999998763
No 6
>PLN02193 nitrile-specifier protein
Probab=100.00 E-value=6.1e-37 Score=346.28 Aligned_cols=283 Identities=24% Similarity=0.343 Sum_probs=234.0
Q ss_pred EEEECCEEEEEcccCCCCCcccEEEE--EcCC----CceEEccccccCCCCCCCCCCCcccceEEEEECCEEEEEeccCC
Q 005043 94 AAVIGNKMIVVGGESGNGLLDDVQVL--NFDR----FSWTAASSKLYLSPSSLPLKIPACRGHSLISWGKKVLLVGGKTD 167 (717)
Q Consensus 94 av~~~~~lyV~GG~~~~~~~~~v~~y--d~~t----~~W~~l~~~~~~~~~~~~~~~p~r~~hs~v~~~~~Iyv~GG~~~ 167 (717)
.+..+++|+.|+|..... ++.+-.| ++.+ ++|..++++. ..+.+|.+|++++++++|||+||...
T Consensus 116 f~~~~~~ivgf~G~~~~~-~~~ig~y~~~~~~~~~~~~W~~~~~~~--------~~P~pR~~h~~~~~~~~iyv~GG~~~ 186 (470)
T PLN02193 116 FVLQGGKIVGFHGRSTDV-LHSLGAYISLPSTPKLLGKWIKVEQKG--------EGPGLRCSHGIAQVGNKIYSFGGEFT 186 (470)
T ss_pred EEEcCCeEEEEeccCCCc-EEeeEEEEecCCChhhhceEEEcccCC--------CCCCCccccEEEEECCEEEEECCcCC
Confidence 344589999999987553 5555444 7655 7999988631 12447889999999999999999854
Q ss_pred CCC-CceEEEEEECCCCcEEEeeecCCCCC-CceeeEEEEECCEEEEEccccCCCCCcCcEEEEEcCCCceEeccCCCCC
Q 005043 168 SGS-DRVSVWTFDTETECWSVVEAKGDIPV-ARSGHTVVRASSVLILFGGEDGKRRKLNDLHMFDLKSLTWLPLHCTGTG 245 (717)
Q Consensus 168 ~~~-~~~~v~~yD~~t~~W~~l~~~g~~P~-~R~~hs~~~~~~~Lyv~GG~~~~~~~~~~v~~yD~~t~~W~~l~~~g~~ 245 (717)
... ..+++|+||+.+++|+.+++.+.+|. +|.+|++++++++||||||.+.. ..++++|+||+.+++|+.+.+.+..
T Consensus 187 ~~~~~~~~v~~yD~~~~~W~~~~~~g~~P~~~~~~~~~v~~~~~lYvfGG~~~~-~~~ndv~~yD~~t~~W~~l~~~~~~ 265 (470)
T PLN02193 187 PNQPIDKHLYVFDLETRTWSISPATGDVPHLSCLGVRMVSIGSTLYVFGGRDAS-RQYNGFYSFDTTTNEWKLLTPVEEG 265 (470)
T ss_pred CCCCeeCcEEEEECCCCEEEeCCCCCCCCCCcccceEEEEECCEEEEECCCCCC-CCCccEEEEECCCCEEEEcCcCCCC
Confidence 333 34679999999999999877666665 46789999999999999998765 4689999999999999999865566
Q ss_pred CCCCcccEEEEECCcEEEEEcCCCCCCCCCeEEEEECCCCcEEEeecCCCCCCCCcceEEEEECCEEEEEecCCCCCccC
Q 005043 246 PSPRSNHVAALYDDKNLLIFGGSSKSKTLNDLYSLDFETMIWTRIKIRGFHPSPRAGCCGVLCGTKWYIAGGGSRKKRHA 325 (717)
Q Consensus 246 P~~R~~~aa~~~~~~~lyV~GG~~~~~~~ndv~~yd~~t~~W~~v~~~g~~P~~R~~~sav~~~~~IyV~GG~~~~~~~~ 325 (717)
|.+|+.|++++++++ ||||||.+....++++++||+.+++|+.++..+.+|.+|.+|+++.++++|||+||.++. ..+
T Consensus 266 P~~R~~h~~~~~~~~-iYv~GG~~~~~~~~~~~~yd~~t~~W~~~~~~~~~~~~R~~~~~~~~~gkiyviGG~~g~-~~~ 343 (470)
T PLN02193 266 PTPRSFHSMAADEEN-VYVFGGVSATARLKTLDSYNIVDKKWFHCSTPGDSFSIRGGAGLEVVQGKVWVVYGFNGC-EVD 343 (470)
T ss_pred CCCccceEEEEECCE-EEEECCCCCCCCcceEEEEECCCCEEEeCCCCCCCCCCCCCcEEEEECCcEEEEECCCCC-ccC
Confidence 999999999999888 999999987778899999999999999998766678899999999999999999998654 368
Q ss_pred eEEEEECCCCcEEEeecCCCCCCCCCcceEEEEEEeCCCcEEEEEcCCCC----------CCCCeEEEEEccCCcccC
Q 005043 326 ETLIFDILKGEWSVAITSPSSSVTSNKGFTLVLVQHKEKDFLVAFGGIKK----------EPSNQVEVLSIEKNESSM 393 (717)
Q Consensus 326 dv~~yD~~t~~W~~l~~~p~~~~~~r~g~s~v~v~~~~~~~I~v~GG~~~----------~~~n~v~vyd~~~~eW~~ 393 (717)
++++||+.+++|+.+... ...|.+|.+|+++++ +++||||||... ...+++|+||+.+++|..
T Consensus 344 dv~~yD~~t~~W~~~~~~-g~~P~~R~~~~~~~~----~~~iyv~GG~~~~~~~~~~~~~~~~ndv~~~D~~t~~W~~ 416 (470)
T PLN02193 344 DVHYYDPVQDKWTQVETF-GVRPSERSVFASAAV----GKHIVIFGGEIAMDPLAHVGPGQLTDGTFALDTETLQWER 416 (470)
T ss_pred ceEEEECCCCEEEEeccC-CCCCCCcceeEEEEE----CCEEEEECCccCCccccccCccceeccEEEEEcCcCEEEE
Confidence 999999999999998743 234678999999888 789999999753 236799999999999964
No 7
>PLN02153 epithiospecifier protein
Probab=100.00 E-value=9.8e-37 Score=331.58 Aligned_cols=289 Identities=19% Similarity=0.260 Sum_probs=222.2
Q ss_pred CCCccCCCCCEEEEEcCCCCCCCCccccccccccCCCCCCCCCeEEeeecCCCCCC-cceeEEEEECCEEEEEcccCCCC
Q 005043 33 PKRNSNPNSECVAPSSNHADDRDCECTIAGPEVSNGTSGNSENWMVLSIAGDKPIP-RFNHAAAVIGNKMIVVGGESGNG 111 (717)
Q Consensus 33 ~~r~s~~~~~~i~l~GG~~~~~~~~~~~~~~~~~~~~~~~s~~W~~l~~~g~~P~~-R~~haav~~~~~lyV~GG~~~~~ 111 (717)
..+..+..++.||++||..... ....++++.++. .++.|..+++.+..|.. +.+|++++++++||||||.....
T Consensus 24 ~~h~~~~~~~~iyv~GG~~~~~-~~~~~~~~~yd~----~~~~W~~~~~~~~~p~~~~~~~~~~~~~~~iyv~GG~~~~~ 98 (341)
T PLN02153 24 CSHGIAVVGDKLYSFGGELKPN-EHIDKDLYVFDF----NTHTWSIAPANGDVPRISCLGVRMVAVGTKLYIFGGRDEKR 98 (341)
T ss_pred CcceEEEECCEEEEECCccCCC-CceeCcEEEEEC----CCCEEEEcCccCCCCCCccCceEEEEECCEEEEECCCCCCC
Confidence 3335555588899999964321 112233344333 77899998754434432 45789999999999999998777
Q ss_pred CcccEEEEEcCCCceEEccccccCCCCCCCCCCCcccceEEEEECCEEEEEeccCCCC-----CCceEEEEEECCCCcEE
Q 005043 112 LLDDVQVLNFDRFSWTAASSKLYLSPSSLPLKIPACRGHSLISWGKKVLLVGGKTDSG-----SDRVSVWTFDTETECWS 186 (717)
Q Consensus 112 ~~~~v~~yd~~t~~W~~l~~~~~~~~~~~~~~~p~r~~hs~v~~~~~Iyv~GG~~~~~-----~~~~~v~~yD~~t~~W~ 186 (717)
.++++++||+.+++|..++++... ..+.+|.+|++++++++|||+||....+ ..++++++||+.+++|+
T Consensus 99 ~~~~v~~yd~~t~~W~~~~~~~~~------~~p~~R~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~v~~yd~~~~~W~ 172 (341)
T PLN02153 99 EFSDFYSYDTVKNEWTFLTKLDEE------GGPEARTFHSMASDENHVYVFGGVSKGGLMKTPERFRTIEAYNIADGKWV 172 (341)
T ss_pred ccCcEEEEECCCCEEEEeccCCCC------CCCCCceeeEEEEECCEEEEECCccCCCccCCCcccceEEEEECCCCeEe
Confidence 789999999999999998764210 1245677999999999999999986432 13568999999999999
Q ss_pred EeeecCCCCCCceeeEEEEECCEEEEEccccCC-------CCCcCcEEEEEcCCCceEeccCCCCCCCCCcccEEEEECC
Q 005043 187 VVEAKGDIPVARSGHTVVRASSVLILFGGEDGK-------RRKLNDLHMFDLKSLTWLPLHCTGTGPSPRSNHVAALYDD 259 (717)
Q Consensus 187 ~l~~~g~~P~~R~~hs~~~~~~~Lyv~GG~~~~-------~~~~~~v~~yD~~t~~W~~l~~~g~~P~~R~~~aa~~~~~ 259 (717)
.++..+..|.+|.+|++++++++|||+||.... ....+++++||+.+++|+.+...+.+|.+|..|+++++++
T Consensus 173 ~l~~~~~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~gG~~~~~~~~v~~yd~~~~~W~~~~~~g~~P~~r~~~~~~~~~~ 252 (341)
T PLN02153 173 QLPDPGENFEKRGGAGFAVVQGKIWVVYGFATSILPGGKSDYESNAVQFFDPASGKWTEVETTGAKPSARSVFAHAVVGK 252 (341)
T ss_pred eCCCCCCCCCCCCcceEEEECCeEEEEeccccccccCCccceecCceEEEEcCCCcEEeccccCCCCCCcceeeeEEECC
Confidence 998755567899999999999999999997521 1236889999999999999987778999999999999998
Q ss_pred cEEEEEcCCC---------CCCCCCeEEEEECCCCcEEEeecCCCCCCCC--cceEEEEE--CCEEEEEecCCCC-CccC
Q 005043 260 KNLLIFGGSS---------KSKTLNDLYSLDFETMIWTRIKIRGFHPSPR--AGCCGVLC--GTKWYIAGGGSRK-KRHA 325 (717)
Q Consensus 260 ~~lyV~GG~~---------~~~~~ndv~~yd~~t~~W~~v~~~g~~P~~R--~~~sav~~--~~~IyV~GG~~~~-~~~~ 325 (717)
+ ||||||.. .....+++|+||+++++|+.+...+.+|.|| ..++++.+ +++|||+||.+.. ..++
T Consensus 253 ~-iyv~GG~~~~~~~~~~~~~~~~n~v~~~d~~~~~W~~~~~~~~~~~pr~~~~~~~~~v~~~~~~~~~gG~~~~~~~~~ 331 (341)
T PLN02153 253 Y-IIIFGGEVWPDLKGHLGPGTLSNEGYALDTETLVWEKLGECGEPAMPRGWTAYTTATVYGKNGLLMHGGKLPTNERTD 331 (341)
T ss_pred E-EEEECcccCCccccccccccccccEEEEEcCccEEEeccCCCCCCCCCccccccccccCCcceEEEEcCcCCCCcccc
Confidence 8 99999973 2335679999999999999997644444444 43444443 4589999999754 6789
Q ss_pred eEEEEECC
Q 005043 326 ETLIFDIL 333 (717)
Q Consensus 326 dv~~yD~~ 333 (717)
++|+|+..
T Consensus 332 ~~~~~~~~ 339 (341)
T PLN02153 332 DLYFYAVN 339 (341)
T ss_pred ceEEEecc
Confidence 99999864
No 8
>PHA02713 hypothetical protein; Provisional
Probab=100.00 E-value=7.8e-37 Score=351.35 Aligned_cols=262 Identities=11% Similarity=0.145 Sum_probs=221.5
Q ss_pred EEEEEcccCCCCCcccEEEEEcCCCceEEccccccCCCCCCCCCCCcccceEEEEECCEEEEEeccCCCCCCceEEEEEE
Q 005043 100 KMIVVGGESGNGLLDDVQVLNFDRFSWTAASSKLYLSPSSLPLKIPACRGHSLISWGKKVLLVGGKTDSGSDRVSVWTFD 179 (717)
Q Consensus 100 ~lyV~GG~~~~~~~~~v~~yd~~t~~W~~l~~~~~~~~~~~~~~~p~r~~hs~v~~~~~Iyv~GG~~~~~~~~~~v~~yD 179 (717)
.|++.||... .....+++||+.+++|..++++ |. ++.+|++++++++||++||........+++|+||
T Consensus 259 ~l~~~~g~~~-~~~~~v~~yd~~~~~W~~l~~m----------p~-~r~~~~~a~l~~~IYviGG~~~~~~~~~~v~~Yd 326 (557)
T PHA02713 259 CLVCHDTKYN-VCNPCILVYNINTMEYSVISTI----------PN-HIINYASAIVDNEIIIAGGYNFNNPSLNKVYKIN 326 (557)
T ss_pred EEEEecCccc-cCCCCEEEEeCCCCeEEECCCC----------Cc-cccceEEEEECCEEEEEcCCCCCCCccceEEEEE
Confidence 3555666321 1335789999999999999884 33 4557899999999999999854444567899999
Q ss_pred CCCCcEEEeeecCCCCCCceeeEEEEECCEEEEEccccCCCCCcCcEEEEEcCCCceEeccCCCCCCCCCcccEEEEECC
Q 005043 180 TETECWSVVEAKGDIPVARSGHTVVRASSVLILFGGEDGKRRKLNDLHMFDLKSLTWLPLHCTGTGPSPRSNHVAALYDD 259 (717)
Q Consensus 180 ~~t~~W~~l~~~g~~P~~R~~hs~~~~~~~Lyv~GG~~~~~~~~~~v~~yD~~t~~W~~l~~~g~~P~~R~~~aa~~~~~ 259 (717)
+.+++|..++ +||.+|..+++++++++||++||.++. ..++++++|||.+++|+.++ ++|.+|..++++++++
T Consensus 327 ~~~n~W~~~~---~m~~~R~~~~~~~~~g~IYviGG~~~~-~~~~sve~Ydp~~~~W~~~~---~mp~~r~~~~~~~~~g 399 (557)
T PHA02713 327 IENKIHVELP---PMIKNRCRFSLAVIDDTIYAIGGQNGT-NVERTIECYTMGDDKWKMLP---DMPIALSSYGMCVLDQ 399 (557)
T ss_pred CCCCeEeeCC---CCcchhhceeEEEECCEEEEECCcCCC-CCCceEEEEECCCCeEEECC---CCCcccccccEEEECC
Confidence 9999999988 499999999999999999999998754 35788999999999999997 8999999999999998
Q ss_pred cEEEEEcCCCCC------------------CCCCeEEEEECCCCcEEEeecCCCCCCCCcceEEEEECCEEEEEecCCCC
Q 005043 260 KNLLIFGGSSKS------------------KTLNDLYSLDFETMIWTRIKIRGFHPSPRAGCCGVLCGTKWYIAGGGSRK 321 (717)
Q Consensus 260 ~~lyV~GG~~~~------------------~~~ndv~~yd~~t~~W~~v~~~g~~P~~R~~~sav~~~~~IyV~GG~~~~ 321 (717)
+ ||++||.+.. ..++.+++|||.+++|+.++++ |.+|..+++++++++|||+||.++.
T Consensus 400 ~-IYviGG~~~~~~~~~~~~~~~~~~~~~~~~~~~ve~YDP~td~W~~v~~m---~~~r~~~~~~~~~~~IYv~GG~~~~ 475 (557)
T PHA02713 400 Y-IYIIGGRTEHIDYTSVHHMNSIDMEEDTHSSNKVIRYDTVNNIWETLPNF---WTGTIRPGVVSHKDDIYVVCDIKDE 475 (557)
T ss_pred E-EEEEeCCCcccccccccccccccccccccccceEEEECCCCCeEeecCCC---CcccccCcEEEECCEEEEEeCCCCC
Confidence 8 9999998642 1367899999999999999765 8899999999999999999998754
Q ss_pred Ccc-CeEEEEECCC-CcEEEeecCCCCCCCCCcceEEEEEEeCCCcEEEEEcCCCCCCCCeEEEEEccCCcccCc
Q 005043 322 KRH-AETLIFDILK-GEWSVAITSPSSSVTSNKGFTLVLVQHKEKDFLVAFGGIKKEPSNQVEVLSIEKNESSMG 394 (717)
Q Consensus 322 ~~~-~dv~~yD~~t-~~W~~l~~~p~~~~~~r~g~s~v~v~~~~~~~I~v~GG~~~~~~n~v~vyd~~~~eW~~~ 394 (717)
... ..+++|||.+ ++|+.++ ++|.+|.+++++++ +++||++||+++. ..+++||+.+++|+..
T Consensus 476 ~~~~~~ve~Ydp~~~~~W~~~~----~m~~~r~~~~~~~~----~~~iyv~Gg~~~~--~~~e~yd~~~~~W~~~ 540 (557)
T PHA02713 476 KNVKTCIFRYNTNTYNGWELIT----TTESRLSALHTILH----DNTIMMLHCYESY--MLQDTFNVYTYEWNHI 540 (557)
T ss_pred CccceeEEEecCCCCCCeeEcc----ccCcccccceeEEE----CCEEEEEeeecce--eehhhcCcccccccch
Confidence 333 4579999999 8999987 34568889999999 8999999999764 4799999999998764
No 9
>PHA02713 hypothetical protein; Provisional
Probab=100.00 E-value=7.4e-37 Score=351.55 Aligned_cols=242 Identities=17% Similarity=0.234 Sum_probs=213.0
Q ss_pred CCCCeEEeeecCCCCCCcceeEEEEECCEEEEEcccC-CCCCcccEEEEEcCCCceEEccccccCCCCCCCCCCCcccce
Q 005043 72 NSENWMVLSIAGDKPIPRFNHAAAVIGNKMIVVGGES-GNGLLDDVQVLNFDRFSWTAASSKLYLSPSSLPLKIPACRGH 150 (717)
Q Consensus 72 ~s~~W~~l~~~g~~P~~R~~haav~~~~~lyV~GG~~-~~~~~~~v~~yd~~t~~W~~l~~~~~~~~~~~~~~~p~r~~h 150 (717)
.++.|..++ ++|.+|.++++++++++|||+||.+ +...++++++||+.++.|..+++| +.+|..+
T Consensus 280 ~~~~W~~l~---~mp~~r~~~~~a~l~~~IYviGG~~~~~~~~~~v~~Yd~~~n~W~~~~~m-----------~~~R~~~ 345 (557)
T PHA02713 280 NTMEYSVIS---TIPNHIINYASAIVDNEIIIAGGYNFNNPSLNKVYKINIENKIHVELPPM-----------IKNRCRF 345 (557)
T ss_pred CCCeEEECC---CCCccccceEEEEECCEEEEEcCCCCCCCccceEEEEECCCCeEeeCCCC-----------cchhhce
Confidence 889999998 8999999999999999999999975 344678999999999999999884 3467789
Q ss_pred EEEEECCEEEEEeccCCCCCCceEEEEEECCCCcEEEeeecCCCCCCceeeEEEEECCEEEEEccccCCC----------
Q 005043 151 SLISWGKKVLLVGGKTDSGSDRVSVWTFDTETECWSVVEAKGDIPVARSGHTVVRASSVLILFGGEDGKR---------- 220 (717)
Q Consensus 151 s~v~~~~~Iyv~GG~~~~~~~~~~v~~yD~~t~~W~~l~~~g~~P~~R~~hs~~~~~~~Lyv~GG~~~~~---------- 220 (717)
++++++++||++||.+. ....+++++||+.+++|+.++ +||.+|.++++++++++||++||.+...
T Consensus 346 ~~~~~~g~IYviGG~~~-~~~~~sve~Ydp~~~~W~~~~---~mp~~r~~~~~~~~~g~IYviGG~~~~~~~~~~~~~~~ 421 (557)
T PHA02713 346 SLAVIDDTIYAIGGQNG-TNVERTIECYTMGDDKWKMLP---DMPIALSSYGMCVLDQYIYIIGGRTEHIDYTSVHHMNS 421 (557)
T ss_pred eEEEECCEEEEECCcCC-CCCCceEEEEECCCCeEEECC---CCCcccccccEEEECCEEEEEeCCCccccccccccccc
Confidence 99999999999999853 334678999999999999988 4999999999999999999999986431
Q ss_pred -------CCcCcEEEEEcCCCceEeccCCCCCCCCCcccEEEEECCcEEEEEcCCCCCC-CCCeEEEEECCC-CcEEEee
Q 005043 221 -------RKLNDLHMFDLKSLTWLPLHCTGTGPSPRSNHVAALYDDKNLLIFGGSSKSK-TLNDLYSLDFET-MIWTRIK 291 (717)
Q Consensus 221 -------~~~~~v~~yD~~t~~W~~l~~~g~~P~~R~~~aa~~~~~~~lyV~GG~~~~~-~~ndv~~yd~~t-~~W~~v~ 291 (717)
..++.+++|||.+++|+.++ +||.+|..+++++++++ |||+||.++.. ..+.+++|||++ ++|+.++
T Consensus 422 ~~~~~~~~~~~~ve~YDP~td~W~~v~---~m~~~r~~~~~~~~~~~-IYv~GG~~~~~~~~~~ve~Ydp~~~~~W~~~~ 497 (557)
T PHA02713 422 IDMEEDTHSSNKVIRYDTVNNIWETLP---NFWTGTIRPGVVSHKDD-IYVVCDIKDEKNVKTCIFRYNTNTYNGWELIT 497 (557)
T ss_pred ccccccccccceEEEECCCCCeEeecC---CCCcccccCcEEEECCE-EEEEeCCCCCCccceeEEEecCCCCCCeeEcc
Confidence 13678999999999999997 89999999999999999 99999986533 335689999999 8999997
Q ss_pred cCCCCCCCCcceEEEEECCEEEEEecCCCCCccCeEEEEECCCCcEEEee
Q 005043 292 IRGFHPSPRAGCCGVLCGTKWYIAGGGSRKKRHAETLIFDILKGEWSVAI 341 (717)
Q Consensus 292 ~~g~~P~~R~~~sav~~~~~IyV~GG~~~~~~~~dv~~yD~~t~~W~~l~ 341 (717)
++ |.+|..+++++++|+||++||+++. ..+.+||+.+++|+.+.
T Consensus 498 ~m---~~~r~~~~~~~~~~~iyv~Gg~~~~---~~~e~yd~~~~~W~~~~ 541 (557)
T PHA02713 498 TT---ESRLSALHTILHDNTIMMLHCYESY---MLQDTFNVYTYEWNHIC 541 (557)
T ss_pred cc---CcccccceeEEECCEEEEEeeecce---eehhhcCcccccccchh
Confidence 65 8999999999999999999998763 36889999999999987
No 10
>KOG4693 consensus Uncharacterized conserved protein, contains kelch repeat [General function prediction only]
Probab=100.00 E-value=3.6e-36 Score=297.59 Aligned_cols=274 Identities=24% Similarity=0.421 Sum_probs=234.2
Q ss_pred CCCccCCCCCEEEEEcCCCCCCCC--ccccccccccCCCCCCCCCeEEeeec----------CCCCCCcceeEEEEECCE
Q 005043 33 PKRNSNPNSECVAPSSNHADDRDC--ECTIAGPEVSNGTSGNSENWMVLSIA----------GDKPIPRFNHAAAVIGNK 100 (717)
Q Consensus 33 ~~r~s~~~~~~i~l~GG~~~~~~~--~~~~~~~~~~~~~~~~s~~W~~l~~~----------g~~P~~R~~haav~~~~~ 100 (717)
..|+++.+|..||.|||...+-.+ ....++-.++ ..+-+|..+++. .-.|..|++|+.+.++++
T Consensus 15 VNHAavaVG~riYSFGGYCsGedy~~~~piDVH~lN----a~~~RWtk~pp~~~ka~i~~~yp~VPyqRYGHtvV~y~d~ 90 (392)
T KOG4693|consen 15 VNHAAVAVGSRIYSFGGYCSGEDYDAKDPIDVHVLN----AENYRWTKMPPGITKATIESPYPAVPYQRYGHTVVEYQDK 90 (392)
T ss_pred ccceeeeecceEEecCCcccccccccCCcceeEEee----ccceeEEecCcccccccccCCCCccchhhcCceEEEEcce
Confidence 557999999999999995543323 2333333332 278899998751 124567999999999999
Q ss_pred EEEEcccCC-CCCcccEEEEEcCCCceEEccccccCCCCCCCCCCCcccceEEEEECCEEEEEeccCCCCC-CceEEEEE
Q 005043 101 MIVVGGESG-NGLLDDVQVLNFDRFSWTAASSKLYLSPSSLPLKIPACRGHSLISWGKKVLLVGGKTDSGS-DRVSVWTF 178 (717)
Q Consensus 101 lyV~GG~~~-~~~~~~v~~yd~~t~~W~~l~~~~~~~~~~~~~~~p~r~~hs~v~~~~~Iyv~GG~~~~~~-~~~~v~~y 178 (717)
+||+||.++ .+..|.++.||++++.|....... .-+++|.+|++|++++.+|||||+..... ..++++.+
T Consensus 91 ~yvWGGRND~egaCN~Ly~fDp~t~~W~~p~v~G--------~vPgaRDGHsAcV~gn~MyiFGGye~~a~~FS~d~h~l 162 (392)
T KOG4693|consen 91 AYVWGGRNDDEGACNLLYEFDPETNVWKKPEVEG--------FVPGARDGHSACVWGNQMYIFGGYEEDAQRFSQDTHVL 162 (392)
T ss_pred EEEEcCccCcccccceeeeeccccccccccceee--------ecCCccCCceeeEECcEEEEecChHHHHHhhhccceeE
Confidence 999999977 567899999999999998876542 34668899999999999999999976443 36689999
Q ss_pred ECCCCcEEEeeecCCCCCCceeeEEEEECCEEEEEccccCC--------CCCcCcEEEEEcCCCceEeccCCCCCCCCCc
Q 005043 179 DTETECWSVVEAKGDIPVARSGHTVVRASSVLILFGGEDGK--------RRKLNDLHMFDLKSLTWLPLHCTGTGPSPRS 250 (717)
Q Consensus 179 D~~t~~W~~l~~~g~~P~~R~~hs~~~~~~~Lyv~GG~~~~--------~~~~~~v~~yD~~t~~W~~l~~~g~~P~~R~ 250 (717)
|+.|.+|+.+...+..|.-|..|+++++++.+|||||+.+. ..+.+.+..+|+.|..|...+..+-.|.+|.
T Consensus 163 d~~TmtWr~~~Tkg~PprwRDFH~a~~~~~~MYiFGGR~D~~gpfHs~~e~Yc~~i~~ld~~T~aW~r~p~~~~~P~GRR 242 (392)
T KOG4693|consen 163 DFATMTWREMHTKGDPPRWRDFHTASVIDGMMYIFGGRSDESGPFHSIHEQYCDTIMALDLATGAWTRTPENTMKPGGRR 242 (392)
T ss_pred eccceeeeehhccCCCchhhhhhhhhhccceEEEeccccccCCCccchhhhhcceeEEEeccccccccCCCCCcCCCccc
Confidence 99999999999999889999999999999999999998643 2467789999999999999988888999999
Q ss_pred ccEEEEECCcEEEEEcCCCC--CCCCCeEEEEECCCCcEEEeecCCCCCCCCcceEEEEECCEEEEEecCC
Q 005043 251 NHVAALYDDKNLLIFGGSSK--SKTLNDLYSLDFETMIWTRIKIRGFHPSPRAGCCGVLCGTKWYIAGGGS 319 (717)
Q Consensus 251 ~~aa~~~~~~~lyV~GG~~~--~~~~ndv~~yd~~t~~W~~v~~~g~~P~~R~~~sav~~~~~IyV~GG~~ 319 (717)
.|++.+++++ +|+|||+++ ..-.+++|.|||.+..|..+...|..|.+|..+++++.++++|+|||..
T Consensus 243 SHS~fvYng~-~Y~FGGYng~ln~HfndLy~FdP~t~~W~~I~~~Gk~P~aRRRqC~~v~g~kv~LFGGTs 312 (392)
T KOG4693|consen 243 SHSTFVYNGK-MYMFGGYNGTLNVHFNDLYCFDPKTSMWSVISVRGKYPSARRRQCSVVSGGKVYLFGGTS 312 (392)
T ss_pred ccceEEEcce-EEEecccchhhhhhhcceeecccccchheeeeccCCCCCcccceeEEEECCEEEEecCCC
Confidence 9999999999 999999986 4568999999999999999999999999999999999999999999964
No 11
>TIGR03547 muta_rot_YjhT mutatrotase, YjhT family. Members of this protein family contain multiple copies of the beta-propeller-forming Kelch repeat. All are full-length homologs to YjhT of Escherichia coli, which has been identified as a mutarotase for sialic acid. This protein improves bacterial ability to obtain host sialic acid, and thus serves as a virulence factor. Some bacteria carry what appears to be a cyclically permuted homolog of this protein.
Probab=100.00 E-value=7e-35 Score=317.58 Aligned_cols=274 Identities=17% Similarity=0.224 Sum_probs=213.3
Q ss_pred CCCCCcceeEEEEECCEEEEEcccCCCCCcccEEEEEc--CCCceEEccccccCCCCCCCCCCCcccceEEEEECCEEEE
Q 005043 84 DKPIPRFNHAAAVIGNKMIVVGGESGNGLLDDVQVLNF--DRFSWTAASSKLYLSPSSLPLKIPACRGHSLISWGKKVLL 161 (717)
Q Consensus 84 ~~P~~R~~haav~~~~~lyV~GG~~~~~~~~~v~~yd~--~t~~W~~l~~~~~~~~~~~~~~~p~r~~hs~v~~~~~Iyv 161 (717)
++|.+|..+++++++++|||+||... +++++||+ .+++|..+++ ++..+|..|++++++++|||
T Consensus 3 ~lp~~~~~~~~~~~~~~vyv~GG~~~----~~~~~~d~~~~~~~W~~l~~----------~p~~~R~~~~~~~~~~~iYv 68 (346)
T TIGR03547 3 DLPVGFKNGTGAIIGDKVYVGLGSAG----TSWYKLDLKKPSKGWQKIAD----------FPGGPRNQAVAAAIDGKLYV 68 (346)
T ss_pred CCCccccCceEEEECCEEEEEccccC----CeeEEEECCCCCCCceECCC----------CCCCCcccceEEEECCEEEE
Confidence 68899999999999999999999743 57899997 5689999988 34346778999999999999
Q ss_pred EeccCCCC-----CCceEEEEEECCCCcEEEeeecCCCCCCceeeEEE-EECCEEEEEccccCCC---------------
Q 005043 162 VGGKTDSG-----SDRVSVWTFDTETECWSVVEAKGDIPVARSGHTVV-RASSVLILFGGEDGKR--------------- 220 (717)
Q Consensus 162 ~GG~~~~~-----~~~~~v~~yD~~t~~W~~l~~~g~~P~~R~~hs~~-~~~~~Lyv~GG~~~~~--------------- 220 (717)
+||..... ..++++|+||+.+++|+.++. .+|.+|.+|+++ +++++||++||.+...
T Consensus 69 ~GG~~~~~~~~~~~~~~~v~~Yd~~~~~W~~~~~--~~p~~~~~~~~~~~~~g~IYviGG~~~~~~~~~~~~~~~~~~~~ 146 (346)
T TIGR03547 69 FGGIGKANSEGSPQVFDDVYRYDPKKNSWQKLDT--RSPVGLLGASGFSLHNGQAYFTGGVNKNIFDGYFADLSAADKDS 146 (346)
T ss_pred EeCCCCCCCCCcceecccEEEEECCCCEEecCCC--CCCCcccceeEEEEeCCEEEEEcCcChHHHHHHHhhHhhcCccc
Confidence 99985422 136789999999999999873 467888888877 7899999999986320
Q ss_pred ------------------CCcCcEEEEEcCCCceEeccCCCCCCC-CCcccEEEEECCcEEEEEcCCCCCC-CCCeEEEE
Q 005043 221 ------------------RKLNDLHMFDLKSLTWLPLHCTGTGPS-PRSNHVAALYDDKNLLIFGGSSKSK-TLNDLYSL 280 (717)
Q Consensus 221 ------------------~~~~~v~~yD~~t~~W~~l~~~g~~P~-~R~~~aa~~~~~~~lyV~GG~~~~~-~~ndv~~y 280 (717)
...+++++||+.+++|+.++ ++|. +|..++++.++++ |||+||..... ...+++.|
T Consensus 147 ~~~~~~~~~~~~~~~~~~~~~~~v~~YDp~t~~W~~~~---~~p~~~r~~~~~~~~~~~-iyv~GG~~~~~~~~~~~~~y 222 (346)
T TIGR03547 147 EPKDKLIAAYFSQPPEDYFWNKNVLSYDPSTNQWRNLG---ENPFLGTAGSAIVHKGNK-LLLINGEIKPGLRTAEVKQY 222 (346)
T ss_pred hhhhhhHHHHhCCChhHcCccceEEEEECCCCceeECc---cCCCCcCCCceEEEECCE-EEEEeeeeCCCccchheEEE
Confidence 12478999999999999997 7885 6889999999988 99999985432 23456666
Q ss_pred E--CCCCcEEEeecCCCC----CCCCcceEEEEECCEEEEEecCCCCC-----------------ccCeEEEEECCCCcE
Q 005043 281 D--FETMIWTRIKIRGFH----PSPRAGCCGVLCGTKWYIAGGGSRKK-----------------RHAETLIFDILKGEW 337 (717)
Q Consensus 281 d--~~t~~W~~v~~~g~~----P~~R~~~sav~~~~~IyV~GG~~~~~-----------------~~~dv~~yD~~t~~W 337 (717)
+ +++++|+.++.++.+ +..+.+|+++.++++|||+||.+... ....+.+||+++++|
T Consensus 223 ~~~~~~~~W~~~~~m~~~r~~~~~~~~~~~a~~~~~~Iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~~e~yd~~~~~W 302 (346)
T TIGR03547 223 LFTGGKLEWNKLPPLPPPKSSSQEGLAGAFAGISNGVLLVAGGANFPGAQENYKNGKLYAHEGLIKAWSSEVYALDNGKW 302 (346)
T ss_pred EecCCCceeeecCCCCCCCCCccccccEEeeeEECCEEEEeecCCCCCchhhhhcCCccccCCCCceeEeeEEEecCCcc
Confidence 5 477799999876321 11234666788999999999975211 123578999999999
Q ss_pred EEeecCCCCCCCCCcceEEEEEEeCCCcEEEEEcCCCCC--CCCeEEEEE
Q 005043 338 SVAITSPSSSVTSNKGFTLVLVQHKEKDFLVAFGGIKKE--PSNQVEVLS 385 (717)
Q Consensus 338 ~~l~~~p~~~~~~r~g~s~v~v~~~~~~~I~v~GG~~~~--~~n~v~vyd 385 (717)
+.+.. +|.+|.+++++++ ++.|||+||.... ..++|+.|.
T Consensus 303 ~~~~~----lp~~~~~~~~~~~----~~~iyv~GG~~~~~~~~~~v~~~~ 344 (346)
T TIGR03547 303 SKVGK----LPQGLAYGVSVSW----NNGVLLIGGENSGGKAVTDVYLLS 344 (346)
T ss_pred cccCC----CCCCceeeEEEEc----CCEEEEEeccCCCCCEeeeEEEEE
Confidence 99873 3456777777667 8999999998643 377887665
No 12
>KOG0379 consensus Kelch repeat-containing proteins [General function prediction only]
Probab=100.00 E-value=3.4e-35 Score=331.75 Aligned_cols=309 Identities=31% Similarity=0.509 Sum_probs=266.0
Q ss_pred ecCCCCCCcceeEEEEECCEEEEEcccCCCCCccc--EEEEEcCCCceEEccccccCCCCCCCCCCCcccceEEEEECCE
Q 005043 81 IAGDKPIPRFNHAAAVIGNKMIVVGGESGNGLLDD--VQVLNFDRFSWTAASSKLYLSPSSLPLKIPACRGHSLISWGKK 158 (717)
Q Consensus 81 ~~g~~P~~R~~haav~~~~~lyV~GG~~~~~~~~~--v~~yd~~t~~W~~l~~~~~~~~~~~~~~~p~r~~hs~v~~~~~ 158 (717)
+.+..|.+|++|+++.+++++|||||........+ +|++|..+..|....... ..+++|++|+++.++++
T Consensus 53 ~~~~~p~~R~~hs~~~~~~~~~vfGG~~~~~~~~~~dl~~~d~~~~~w~~~~~~g--------~~p~~r~g~~~~~~~~~ 124 (482)
T KOG0379|consen 53 VLGVGPIPRAGHSAVLIGNKLYVFGGYGSGDRLTDLDLYVLDLESQLWTKPAATG--------DEPSPRYGHSLSAVGDK 124 (482)
T ss_pred cCCCCcchhhccceeEECCEEEEECCCCCCCccccceeEEeecCCcccccccccC--------CCCCcccceeEEEECCe
Confidence 45678999999999999999999999877665555 999999999999887642 23468899999999999
Q ss_pred EEEEeccCCCCCCceEEEEEECCCCcEEEeeecCCCCCCceeeEEEEECCEEEEEccccCCCCCcCcEEEEEcCCCceEe
Q 005043 159 VLLVGGKTDSGSDRVSVWTFDTETECWSVVEAKGDIPVARSGHTVVRASSVLILFGGEDGKRRKLNDLHMFDLKSLTWLP 238 (717)
Q Consensus 159 Iyv~GG~~~~~~~~~~v~~yD~~t~~W~~l~~~g~~P~~R~~hs~~~~~~~Lyv~GG~~~~~~~~~~v~~yD~~t~~W~~ 238 (717)
||+|||........++++.||+.|.+|+.+.+.+..|.+|.+|+++++++++|||||.+..+..++++|+||+.+.+|.+
T Consensus 125 l~lfGG~~~~~~~~~~l~~~d~~t~~W~~l~~~~~~P~~r~~Hs~~~~g~~l~vfGG~~~~~~~~ndl~i~d~~~~~W~~ 204 (482)
T KOG0379|consen 125 LYLFGGTDKKYRNLNELHSLDLSTRTWSLLSPTGDPPPPRAGHSATVVGTKLVVFGGIGGTGDSLNDLHIYDLETSTWSE 204 (482)
T ss_pred EEEEccccCCCCChhheEeccCCCCcEEEecCcCCCCCCcccceEEEECCEEEEECCccCcccceeeeeeecccccccee
Confidence 99999998656668899999999999999999999999999999999999999999999887689999999999999999
Q ss_pred ccCCCCCCCCCcccEEEEECCcEEEEEcCCC-CCCCCCeEEEEECCCCcEEEeecCCCCCCCCcceEEEEECCEEEEEec
Q 005043 239 LHCTGTGPSPRSNHVAALYDDKNLLIFGGSS-KSKTLNDLYSLDFETMIWTRIKIRGFHPSPRAGCCGVLCGTKWYIAGG 317 (717)
Q Consensus 239 l~~~g~~P~~R~~~aa~~~~~~~lyV~GG~~-~~~~~ndv~~yd~~t~~W~~v~~~g~~P~~R~~~sav~~~~~IyV~GG 317 (717)
+.+.|..|.||++|++++++++ ++||||.+ ...+++|+|.||+.+..|..+...+..|.+|++|+++..+.+++|+||
T Consensus 205 ~~~~g~~P~pR~gH~~~~~~~~-~~v~gG~~~~~~~l~D~~~ldl~~~~W~~~~~~g~~p~~R~~h~~~~~~~~~~l~gG 283 (482)
T KOG0379|consen 205 LDTQGEAPSPRYGHAMVVVGNK-LLVFGGGDDGDVYLNDVHILDLSTWEWKLLPTGGDLPSPRSGHSLTVSGDHLLLFGG 283 (482)
T ss_pred cccCCCCCCCCCCceEEEECCe-EEEEeccccCCceecceEeeecccceeeeccccCCCCCCcceeeeEEECCEEEEEcC
Confidence 9999999999999999999999 77777776 788999999999999999999999999999999999999999999999
Q ss_pred CCCC-C-ccCeEEEEECCCCcEEEeecCCCCCCCCCcceEEEEEEeCCCcEEEEEcCCC--CCCCCeEEEEEccCCcccC
Q 005043 318 GSRK-K-RHAETLIFDILKGEWSVAITSPSSSVTSNKGFTLVLVQHKEKDFLVAFGGIK--KEPSNQVEVLSIEKNESSM 393 (717)
Q Consensus 318 ~~~~-~-~~~dv~~yD~~t~~W~~l~~~p~~~~~~r~g~s~v~v~~~~~~~I~v~GG~~--~~~~n~v~vyd~~~~eW~~ 393 (717)
.... . .+.++|.||..+..|..+.......+.++.+++...+...+...+.++||.. ....++++...+....-..
T Consensus 284 ~~~~~~~~l~~~~~l~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 363 (482)
T KOG0379|consen 284 GTDPKQEPLGDLYGLDLETLVWSKVESVGVVRPSPRLGHAAELIDELGKDGLGILGGNQILGERLADVFSLQIKLLSRKN 363 (482)
T ss_pred CcccccccccccccccccccceeeeeccccccccccccccceeeccCCccceeeecCccccccchhhcccccccccccCC
Confidence 8764 3 6899999999999999997654345778899998888877777788888853 3335666655555444333
Q ss_pred ccccc
Q 005043 394 GRRST 398 (717)
Q Consensus 394 ~w~~~ 398 (717)
.|...
T Consensus 364 ~~~~~ 368 (482)
T KOG0379|consen 364 EVQEP 368 (482)
T ss_pred ccccc
Confidence 34443
No 13
>PRK14131 N-acetylneuraminic acid mutarotase; Provisional
Probab=100.00 E-value=5e-34 Score=314.25 Aligned_cols=286 Identities=17% Similarity=0.255 Sum_probs=221.8
Q ss_pred CCCeEEeeecCCCCCCcceeEEEEECCEEEEEcccCCCCCcccEEEEEcC--CCceEEccccccCCCCCCCCCCCcccce
Q 005043 73 SENWMVLSIAGDKPIPRFNHAAAVIGNKMIVVGGESGNGLLDDVQVLNFD--RFSWTAASSKLYLSPSSLPLKIPACRGH 150 (717)
Q Consensus 73 s~~W~~l~~~g~~P~~R~~haav~~~~~lyV~GG~~~~~~~~~v~~yd~~--t~~W~~l~~~~~~~~~~~~~~~p~r~~h 150 (717)
.-.|..++ ++|.+|..+++++++++|||+||... +.+++||+. ++.|..+++ ++.++|.+|
T Consensus 16 ~~~~~~l~---~lP~~~~~~~~~~~~~~iyv~gG~~~----~~~~~~d~~~~~~~W~~l~~----------~p~~~r~~~ 78 (376)
T PRK14131 16 AANAEQLP---DLPVPFKNGTGAIDNNTVYVGLGSAG----TSWYKLDLNAPSKGWTKIAA----------FPGGPREQA 78 (376)
T ss_pred ceecccCC---CCCcCccCCeEEEECCEEEEEeCCCC----CeEEEEECCCCCCCeEECCc----------CCCCCcccc
Confidence 44577777 89999998899999999999999743 358999987 478999987 344567789
Q ss_pred EEEEECCEEEEEeccCCC-----CCCceEEEEEECCCCcEEEeeecCCCCCCceeeEEEE-ECCEEEEEccccCCC----
Q 005043 151 SLISWGKKVLLVGGKTDS-----GSDRVSVWTFDTETECWSVVEAKGDIPVARSGHTVVR-ASSVLILFGGEDGKR---- 220 (717)
Q Consensus 151 s~v~~~~~Iyv~GG~~~~-----~~~~~~v~~yD~~t~~W~~l~~~g~~P~~R~~hs~~~-~~~~Lyv~GG~~~~~---- 220 (717)
++++++++|||+||.... ....+++|+||+.+++|+.++. .+|.++.+|++++ .+++||++||.+...
T Consensus 79 ~~v~~~~~IYV~GG~~~~~~~~~~~~~~~v~~YD~~~n~W~~~~~--~~p~~~~~~~~~~~~~~~IYv~GG~~~~~~~~~ 156 (376)
T PRK14131 79 VAAFIDGKLYVFGGIGKTNSEGSPQVFDDVYKYDPKTNSWQKLDT--RSPVGLAGHVAVSLHNGKAYITGGVNKNIFDGY 156 (376)
T ss_pred eEEEECCEEEEEcCCCCCCCCCceeEcccEEEEeCCCCEEEeCCC--CCCCcccceEEEEeeCCEEEEECCCCHHHHHHH
Confidence 999999999999998641 1235789999999999999874 3577888888877 899999999975310
Q ss_pred -----------------------------CCcCcEEEEEcCCCceEeccCCCCCCC-CCcccEEEEECCcEEEEEcCCCC
Q 005043 221 -----------------------------RKLNDLHMFDLKSLTWLPLHCTGTGPS-PRSNHVAALYDDKNLLIFGGSSK 270 (717)
Q Consensus 221 -----------------------------~~~~~v~~yD~~t~~W~~l~~~g~~P~-~R~~~aa~~~~~~~lyV~GG~~~ 270 (717)
...+++++||+.+++|+.+. ++|. +|..|+++.++++ |||+||...
T Consensus 157 ~~d~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~v~~YD~~t~~W~~~~---~~p~~~~~~~a~v~~~~~-iYv~GG~~~ 232 (376)
T PRK14131 157 FEDLAAAGKDKTPKDKINDAYFDKKPEDYFFNKEVLSYDPSTNQWKNAG---ESPFLGTAGSAVVIKGNK-LWLINGEIK 232 (376)
T ss_pred HhhhhhcccchhhhhhhHHHHhcCChhhcCcCceEEEEECCCCeeeECC---cCCCCCCCcceEEEECCE-EEEEeeeEC
Confidence 12478999999999999986 7775 7888888888888 999999743
Q ss_pred C-CCCCeEE--EEECCCCcEEEeecCCCCCCCCc--------ceEEEEECCEEEEEecCCCCC--------------c--
Q 005043 271 S-KTLNDLY--SLDFETMIWTRIKIRGFHPSPRA--------GCCGVLCGTKWYIAGGGSRKK--------------R-- 323 (717)
Q Consensus 271 ~-~~~ndv~--~yd~~t~~W~~v~~~g~~P~~R~--------~~sav~~~~~IyV~GG~~~~~--------------~-- 323 (717)
. ....+++ .||+++++|+.++.+ |.+|. ++.+++++++|||+||.+... .
T Consensus 233 ~~~~~~~~~~~~~~~~~~~W~~~~~~---p~~~~~~~~~~~~~~~a~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~~~~ 309 (376)
T PRK14131 233 PGLRTDAVKQGKFTGNNLKWQKLPDL---PPAPGGSSQEGVAGAFAGYSNGVLLVAGGANFPGARENYQNGKLYAHEGLK 309 (376)
T ss_pred CCcCChhheEEEecCCCcceeecCCC---CCCCcCCcCCccceEeceeECCEEEEeeccCCCCChhhhhcCCcccccCCc
Confidence 2 2334444 557789999999876 44442 333567899999999975321 0
Q ss_pred -cCeEEEEECCCCcEEEeecCCCCCCCCCcceEEEEEEeCCCcEEEEEcCCCCC--CCCeEEEEEccCCccc
Q 005043 324 -HAETLIFDILKGEWSVAITSPSSSVTSNKGFTLVLVQHKEKDFLVAFGGIKKE--PSNQVEVLSIEKNESS 392 (717)
Q Consensus 324 -~~dv~~yD~~t~~W~~l~~~p~~~~~~r~g~s~v~v~~~~~~~I~v~GG~~~~--~~n~v~vyd~~~~eW~ 392 (717)
...+.+||+.+++|+.+. ..|.+|.+++++++ ++.|||+||.... ..++|++|.++.+.+.
T Consensus 310 ~~~~~e~yd~~~~~W~~~~----~lp~~r~~~~av~~----~~~iyv~GG~~~~~~~~~~v~~~~~~~~~~~ 373 (376)
T PRK14131 310 KSWSDEIYALVNGKWQKVG----ELPQGLAYGVSVSW----NNGVLLIGGETAGGKAVSDVTLLSWDGKKLT 373 (376)
T ss_pred ceeehheEEecCCcccccC----cCCCCccceEEEEe----CCEEEEEcCCCCCCcEeeeEEEEEEcCCEEE
Confidence 124678999999999876 34557788887777 7899999998543 4889999999877643
No 14
>PHA03098 kelch-like protein; Provisional
Probab=100.00 E-value=3.8e-34 Score=329.44 Aligned_cols=245 Identities=18% Similarity=0.289 Sum_probs=211.0
Q ss_pred CCCCeEEeeecCCCCCCcceeEEEEECCEEEEEcccCCCC-CcccEEEEEcCCCceEEccccccCCCCCCCCCCCcccce
Q 005043 72 NSENWMVLSIAGDKPIPRFNHAAAVIGNKMIVVGGESGNG-LLDDVQVLNFDRFSWTAASSKLYLSPSSLPLKIPACRGH 150 (717)
Q Consensus 72 ~s~~W~~l~~~g~~P~~R~~haav~~~~~lyV~GG~~~~~-~~~~v~~yd~~t~~W~~l~~~~~~~~~~~~~~~p~r~~h 150 (717)
...+|..++ +.|. +..|++++++++|||+||..... ..+++++||+.+++|..++++ +.+|.+|
T Consensus 272 ~~~~~~~~~---~~~~-~~~~~~~~~~~~lyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~~-----------~~~R~~~ 336 (534)
T PHA03098 272 PLSEINTII---DIHY-VYCFGSVVLNNVIYFIGGMNKNNLSVNSVVSYDTKTKSWNKVPEL-----------IYPRKNP 336 (534)
T ss_pred hhhhccccc---Cccc-cccceEEEECCEEEEECCCcCCCCeeccEEEEeCCCCeeeECCCC-----------Ccccccc
Confidence 567788875 4443 45578999999999999987544 567999999999999998873 2357789
Q ss_pred EEEEECCEEEEEeccCCCCCCceEEEEEECCCCcEEEeeecCCCCCCceeeEEEEECCEEEEEccccCCCCCcCcEEEEE
Q 005043 151 SLISWGKKVLLVGGKTDSGSDRVSVWTFDTETECWSVVEAKGDIPVARSGHTVVRASSVLILFGGEDGKRRKLNDLHMFD 230 (717)
Q Consensus 151 s~v~~~~~Iyv~GG~~~~~~~~~~v~~yD~~t~~W~~l~~~g~~P~~R~~hs~~~~~~~Lyv~GG~~~~~~~~~~v~~yD 230 (717)
++++++++||++||.. .....+++++||+.+++|+.++ ++|.+|.+|+++.++++||++||....+..++++++||
T Consensus 337 ~~~~~~~~lyv~GG~~-~~~~~~~v~~yd~~~~~W~~~~---~lp~~r~~~~~~~~~~~iYv~GG~~~~~~~~~~v~~yd 412 (534)
T PHA03098 337 GVTVFNNRIYVIGGIY-NSISLNTVESWKPGESKWREEP---PLIFPRYNPCVVNVNNLIYVIGGISKNDELLKTVECFS 412 (534)
T ss_pred eEEEECCEEEEEeCCC-CCEecceEEEEcCCCCceeeCC---CcCcCCccceEEEECCEEEEECCcCCCCcccceEEEEe
Confidence 9999999999999986 3445678999999999999987 48999999999999999999999866555689999999
Q ss_pred cCCCceEeccCCCCCCCCCcccEEEEECCcEEEEEcCCCCCC---CCCeEEEEECCCCcEEEeecCCCCCCCCcceEEEE
Q 005043 231 LKSLTWLPLHCTGTGPSPRSNHVAALYDDKNLLIFGGSSKSK---TLNDLYSLDFETMIWTRIKIRGFHPSPRAGCCGVL 307 (717)
Q Consensus 231 ~~t~~W~~l~~~g~~P~~R~~~aa~~~~~~~lyV~GG~~~~~---~~ndv~~yd~~t~~W~~v~~~g~~P~~R~~~sav~ 307 (717)
+.+++|+.+. ++|.+|.+|+++.++++ |||+||.+... ..+.+++||+.+++|+.++.+ |.+|.+++++.
T Consensus 413 ~~t~~W~~~~---~~p~~r~~~~~~~~~~~-iyv~GG~~~~~~~~~~~~v~~yd~~~~~W~~~~~~---~~~r~~~~~~~ 485 (534)
T PHA03098 413 LNTNKWSKGS---PLPISHYGGCAIYHDGK-IYVIGGISYIDNIKVYNIVESYNPVTNKWTELSSL---NFPRINASLCI 485 (534)
T ss_pred CCCCeeeecC---CCCccccCceEEEECCE-EEEECCccCCCCCcccceEEEecCCCCceeeCCCC---CcccccceEEE
Confidence 9999999987 78999999999999888 99999986432 357799999999999999764 78899999999
Q ss_pred ECCEEEEEecCCCCCccCeEEEEECCCCcEEEeec
Q 005043 308 CGTKWYIAGGGSRKKRHAETLIFDILKGEWSVAIT 342 (717)
Q Consensus 308 ~~~~IyV~GG~~~~~~~~dv~~yD~~t~~W~~l~~ 342 (717)
++++|||+||.+.....+++++||+.+++|+.++.
T Consensus 486 ~~~~iyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~ 520 (534)
T PHA03098 486 FNNKIYVVGGDKYEYYINEIEVYDDKTNTWTLFCK 520 (534)
T ss_pred ECCEEEEEcCCcCCcccceeEEEeCCCCEEEecCC
Confidence 99999999999876667899999999999999874
No 15
>TIGR03548 mutarot_permut cyclically-permuted mutatrotase family protein. Members of this protein family show essentially full-length homology, cyclically permuted, to YjhT from Escherichia coli. YjhT was shown to act as a mutarotase for sialic acid, and by this ability to be able to act as a virulence factor. Members of the YjhT family (TIGR03547) and this cyclically-permuted family have multiple repeats of the beta-propeller-forming Kelch repeat.
Probab=100.00 E-value=7.6e-34 Score=306.61 Aligned_cols=264 Identities=19% Similarity=0.349 Sum_probs=206.1
Q ss_pred CCcceeEEEEECCEEEEEcccCCCC----------CcccEEEEE-cCC-CceEEccccccCCCCCCCCCCCcccceEEEE
Q 005043 87 IPRFNHAAAVIGNKMIVVGGESGNG----------LLDDVQVLN-FDR-FSWTAASSKLYLSPSSLPLKIPACRGHSLIS 154 (717)
Q Consensus 87 ~~R~~haav~~~~~lyV~GG~~~~~----------~~~~v~~yd-~~t-~~W~~l~~~~~~~~~~~~~~~p~r~~hs~v~ 154 (717)
..+.++.++++++.|||+||.+... .++++++|+ +.. .+|..+++ ++. +|..+++++
T Consensus 2 ~~~~g~~~~~~~~~l~v~GG~~~~~~~~~~~g~~~~~~~v~~~~~~~~~~~W~~~~~----------lp~-~r~~~~~~~ 70 (323)
T TIGR03548 2 LGVAGCYAGIIGDYILVAGGCNFPEDPLAEGGKKKNYKGIYIAKDENSNLKWVKDGQ----------LPY-EAAYGASVS 70 (323)
T ss_pred CceeeEeeeEECCEEEEeeccCCCCCchhhCCcEEeeeeeEEEecCCCceeEEEccc----------CCc-cccceEEEE
Confidence 4678899999999999999976432 356889886 332 37999887 333 455667788
Q ss_pred ECCEEEEEeccCCCCCCceEEEEEECCCCcEE-EeeecCCCCCCceeeEEEEECCEEEEEccccCCCCCcCcEEEEEcCC
Q 005043 155 WGKKVLLVGGKTDSGSDRVSVWTFDTETECWS-VVEAKGDIPVARSGHTVVRASSVLILFGGEDGKRRKLNDLHMFDLKS 233 (717)
Q Consensus 155 ~~~~Iyv~GG~~~~~~~~~~v~~yD~~t~~W~-~l~~~g~~P~~R~~hs~~~~~~~Lyv~GG~~~~~~~~~~v~~yD~~t 233 (717)
++++||++||... ....+++|+||+.+++|. .....+++|.+|..|++++++++|||+||.... ..++++++||+.+
T Consensus 71 ~~~~lyviGG~~~-~~~~~~v~~~d~~~~~w~~~~~~~~~lp~~~~~~~~~~~~~~iYv~GG~~~~-~~~~~v~~yd~~~ 148 (323)
T TIGR03548 71 VENGIYYIGGSNS-SERFSSVYRITLDESKEELICETIGNLPFTFENGSACYKDGTLYVGGGNRNG-KPSNKSYLFNLET 148 (323)
T ss_pred ECCEEEEEcCCCC-CCCceeEEEEEEcCCceeeeeeEcCCCCcCccCceEEEECCEEEEEeCcCCC-ccCceEEEEcCCC
Confidence 8999999999864 345679999999999983 112223699999999999999999999998543 4579999999999
Q ss_pred CceEeccCCCCCC-CCCcccEEEEECCcEEEEEcCCCCCCCCCeEEEEECCCCcEEEeecCCC--CCCCCcceEEE-EEC
Q 005043 234 LTWLPLHCTGTGP-SPRSNHVAALYDDKNLLIFGGSSKSKTLNDLYSLDFETMIWTRIKIRGF--HPSPRAGCCGV-LCG 309 (717)
Q Consensus 234 ~~W~~l~~~g~~P-~~R~~~aa~~~~~~~lyV~GG~~~~~~~ndv~~yd~~t~~W~~v~~~g~--~P~~R~~~sav-~~~ 309 (717)
++|+.++ ++| .+|..|++++++++ |||+||.+.. ...++++||+.+++|+.++.+.. .|.++..++++ ..+
T Consensus 149 ~~W~~~~---~~p~~~r~~~~~~~~~~~-iYv~GG~~~~-~~~~~~~yd~~~~~W~~~~~~~~~~~p~~~~~~~~~~~~~ 223 (323)
T TIGR03548 149 QEWFELP---DFPGEPRVQPVCVKLQNE-LYVFGGGSNI-AYTDGYKYSPKKNQWQKVADPTTDSEPISLLGAASIKINE 223 (323)
T ss_pred CCeeECC---CCCCCCCCcceEEEECCE-EEEEcCCCCc-cccceEEEecCCCeeEECCCCCCCCCceeccceeEEEECC
Confidence 9999997 666 47999988889888 9999998653 34678999999999999987532 34444444444 447
Q ss_pred CEEEEEecCCCCC--------------------------------ccCeEEEEECCCCcEEEeecCCCCCCCCCcceEEE
Q 005043 310 TKWYIAGGGSRKK--------------------------------RHAETLIFDILKGEWSVAITSPSSSVTSNKGFTLV 357 (717)
Q Consensus 310 ~~IyV~GG~~~~~--------------------------------~~~dv~~yD~~t~~W~~l~~~p~~~~~~r~g~s~v 357 (717)
++|||+||.+... ..+++++||+.+++|+.++..| ..+|.+++++
T Consensus 224 ~~iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~yd~~~~~W~~~~~~p---~~~r~~~~~~ 300 (323)
T TIGR03548 224 SLLLCIGGFNKDVYNDAVIDLATMKDESLKGYKKEYFLKPPEWYNWNRKILIYNVRTGKWKSIGNSP---FFARCGAALL 300 (323)
T ss_pred CEEEEECCcCHHHHHHHHhhhhhccchhhhhhHHHHhCCCccccCcCceEEEEECCCCeeeEccccc---ccccCchheE
Confidence 9999999986421 1367999999999999987322 2478899998
Q ss_pred EEEeCCCcEEEEEcCCCC
Q 005043 358 LVQHKEKDFLVAFGGIKK 375 (717)
Q Consensus 358 ~v~~~~~~~I~v~GG~~~ 375 (717)
.+ ++.||++||...
T Consensus 301 ~~----~~~iyv~GG~~~ 314 (323)
T TIGR03548 301 LT----GNNIFSINGELK 314 (323)
T ss_pred EE----CCEEEEEecccc
Confidence 88 789999999743
No 16
>PHA03098 kelch-like protein; Provisional
Probab=100.00 E-value=4.1e-33 Score=320.91 Aligned_cols=263 Identities=17% Similarity=0.216 Sum_probs=218.8
Q ss_pred CEEEEEcccCCCCCcccEEEEEcCCCceEEccccccCCCCCCCCCCCcccceEEEEECCEEEEEeccCCCCCCceEEEEE
Q 005043 99 NKMIVVGGESGNGLLDDVQVLNFDRFSWTAASSKLYLSPSSLPLKIPACRGHSLISWGKKVLLVGGKTDSGSDRVSVWTF 178 (717)
Q Consensus 99 ~~lyV~GG~~~~~~~~~v~~yd~~t~~W~~l~~~~~~~~~~~~~~~p~r~~hs~v~~~~~Iyv~GG~~~~~~~~~~v~~y 178 (717)
..+++.||.. .....+..|+...++|..+++ .+.+..|+++++++.||++||........+++++|
T Consensus 251 ~~~~~~~g~~--~~~~~~~~~~~~~~~~~~~~~------------~~~~~~~~~~~~~~~lyv~GG~~~~~~~~~~v~~y 316 (534)
T PHA03098 251 SIIYIHITMS--IFTYNYITNYSPLSEINTIID------------IHYVYCFGSVVLNNVIYFIGGMNKNNLSVNSVVSY 316 (534)
T ss_pred cceEeecccc--hhhceeeecchhhhhcccccC------------ccccccceEEEECCEEEEECCCcCCCCeeccEEEE
Confidence 3455556644 233456678888889988765 22344578999999999999997655566789999
Q ss_pred ECCCCcEEEeeecCCCCCCceeeEEEEECCEEEEEccccCCCCCcCcEEEEEcCCCceEeccCCCCCCCCCcccEEEEEC
Q 005043 179 DTETECWSVVEAKGDIPVARSGHTVVRASSVLILFGGEDGKRRKLNDLHMFDLKSLTWLPLHCTGTGPSPRSNHVAALYD 258 (717)
Q Consensus 179 D~~t~~W~~l~~~g~~P~~R~~hs~~~~~~~Lyv~GG~~~~~~~~~~v~~yD~~t~~W~~l~~~g~~P~~R~~~aa~~~~ 258 (717)
|+.+++|..++ .+|.+|.+|+++.++++||++||.+.. ..++++++||+.+++|+.++ ++|.+|+.|+++.++
T Consensus 317 d~~~~~W~~~~---~~~~~R~~~~~~~~~~~lyv~GG~~~~-~~~~~v~~yd~~~~~W~~~~---~lp~~r~~~~~~~~~ 389 (534)
T PHA03098 317 DTKTKSWNKVP---ELIYPRKNPGVTVFNNRIYVIGGIYNS-ISLNTVESWKPGESKWREEP---PLIFPRYNPCVVNVN 389 (534)
T ss_pred eCCCCeeeECC---CCCcccccceEEEECCEEEEEeCCCCC-EecceEEEEcCCCCceeeCC---CcCcCCccceEEEEC
Confidence 99999999887 589999999999999999999998754 46789999999999999987 899999999999999
Q ss_pred CcEEEEEcCCCC-CCCCCeEEEEECCCCcEEEeecCCCCCCCCcceEEEEECCEEEEEecCCCCC---ccCeEEEEECCC
Q 005043 259 DKNLLIFGGSSK-SKTLNDLYSLDFETMIWTRIKIRGFHPSPRAGCCGVLCGTKWYIAGGGSRKK---RHAETLIFDILK 334 (717)
Q Consensus 259 ~~~lyV~GG~~~-~~~~ndv~~yd~~t~~W~~v~~~g~~P~~R~~~sav~~~~~IyV~GG~~~~~---~~~dv~~yD~~t 334 (717)
++ |||+||... ...++++++||+.+++|+.++++ |.+|.+|+++.++++|||+||.+... ..+.+++||+.+
T Consensus 390 ~~-iYv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~---p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~v~~yd~~~ 465 (534)
T PHA03098 390 NL-IYVIGGISKNDELLKTVECFSLNTNKWSKGSPL---PISHYGGCAIYHDGKIYVIGGISYIDNIKVYNIVESYNPVT 465 (534)
T ss_pred CE-EEEECCcCCCCcccceEEEEeCCCCeeeecCCC---CccccCceEEEECCEEEEECCccCCCCCcccceEEEecCCC
Confidence 88 999999743 34578999999999999998764 88999999999999999999986432 256799999999
Q ss_pred CcEEEeecCCCCCCCCCcceEEEEEEeCCCcEEEEEcCCCCCC-CCeEEEEEccCCcccCc
Q 005043 335 GEWSVAITSPSSSVTSNKGFTLVLVQHKEKDFLVAFGGIKKEP-SNQVEVLSIEKNESSMG 394 (717)
Q Consensus 335 ~~W~~l~~~p~~~~~~r~g~s~v~v~~~~~~~I~v~GG~~~~~-~n~v~vyd~~~~eW~~~ 394 (717)
++|+.++. .+.+|.+++++.+ +++||++||.++.. .+++++||+.+++|...
T Consensus 466 ~~W~~~~~----~~~~r~~~~~~~~----~~~iyv~GG~~~~~~~~~v~~yd~~~~~W~~~ 518 (534)
T PHA03098 466 NKWTELSS----LNFPRINASLCIF----NNKIYVVGGDKYEYYINEIEVYDDKTNTWTLF 518 (534)
T ss_pred CceeeCCC----CCcccccceEEEE----CCEEEEEcCCcCCcccceeEEEeCCCCEEEec
Confidence 99999873 3456788888777 78999999997655 78999999999998653
No 17
>TIGR03547 muta_rot_YjhT mutatrotase, YjhT family. Members of this protein family contain multiple copies of the beta-propeller-forming Kelch repeat. All are full-length homologs to YjhT of Escherichia coli, which has been identified as a mutarotase for sialic acid. This protein improves bacterial ability to obtain host sialic acid, and thus serves as a virulence factor. Some bacteria carry what appears to be a cyclically permuted homolog of this protein.
Probab=100.00 E-value=6.6e-33 Score=302.05 Aligned_cols=264 Identities=20% Similarity=0.279 Sum_probs=201.0
Q ss_pred ccCCCCCEEEEEcCCCCCCCCccccccccccCCCCCCCCCeEEeeecCCCC-CCcceeEEEEECCEEEEEcccCCCC---
Q 005043 36 NSNPNSECVAPSSNHADDRDCECTIAGPEVSNGTSGNSENWMVLSIAGDKP-IPRFNHAAAVIGNKMIVVGGESGNG--- 111 (717)
Q Consensus 36 ~s~~~~~~i~l~GG~~~~~~~~~~~~~~~~~~~~~~~s~~W~~l~~~g~~P-~~R~~haav~~~~~lyV~GG~~~~~--- 111 (717)
..+..++.||++||... ...+.++.. ...+.|..++ ++| .+|.++++++++++|||+||.....
T Consensus 12 ~~~~~~~~vyv~GG~~~-------~~~~~~d~~--~~~~~W~~l~---~~p~~~R~~~~~~~~~~~iYv~GG~~~~~~~~ 79 (346)
T TIGR03547 12 TGAIIGDKVYVGLGSAG-------TSWYKLDLK--KPSKGWQKIA---DFPGGPRNQAVAAAIDGKLYVFGGIGKANSEG 79 (346)
T ss_pred eEEEECCEEEEEccccC-------CeeEEEECC--CCCCCceECC---CCCCCCcccceEEEECCEEEEEeCCCCCCCCC
Confidence 33355888999999532 122333221 2568899998 788 5899999999999999999985422
Q ss_pred ---CcccEEEEEcCCCceEEccccccCCCCCCCCCCCcccceEEE-EECCEEEEEeccCCCC------------------
Q 005043 112 ---LLDDVQVLNFDRFSWTAASSKLYLSPSSLPLKIPACRGHSLI-SWGKKVLLVGGKTDSG------------------ 169 (717)
Q Consensus 112 ---~~~~v~~yd~~t~~W~~l~~~~~~~~~~~~~~~p~r~~hs~v-~~~~~Iyv~GG~~~~~------------------ 169 (717)
.++++|+||+.+++|+.++. ..+..+.+|+++ +++++||++||.....
T Consensus 80 ~~~~~~~v~~Yd~~~~~W~~~~~----------~~p~~~~~~~~~~~~~g~IYviGG~~~~~~~~~~~~~~~~~~~~~~~ 149 (346)
T TIGR03547 80 SPQVFDDVYRYDPKKNSWQKLDT----------RSPVGLLGASGFSLHNGQAYFTGGVNKNIFDGYFADLSAADKDSEPK 149 (346)
T ss_pred cceecccEEEEECCCCEEecCCC----------CCCCcccceeEEEEeCCEEEEEcCcChHHHHHHHhhHhhcCccchhh
Confidence 47899999999999999874 113345567666 6899999999985310
Q ss_pred ---------------CCceEEEEEECCCCcEEEeeecCCCCC-CceeeEEEEECCEEEEEccccCCCCCcCcEEEEE--c
Q 005043 170 ---------------SDRVSVWTFDTETECWSVVEAKGDIPV-ARSGHTVVRASSVLILFGGEDGKRRKLNDLHMFD--L 231 (717)
Q Consensus 170 ---------------~~~~~v~~yD~~t~~W~~l~~~g~~P~-~R~~hs~~~~~~~Lyv~GG~~~~~~~~~~v~~yD--~ 231 (717)
...+++++||+.+++|+.++ .||. +|.+++++.++++|||+||....+....+++.|| +
T Consensus 150 ~~~~~~~~~~~~~~~~~~~~v~~YDp~t~~W~~~~---~~p~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~y~~~~ 226 (346)
T TIGR03547 150 DKLIAAYFSQPPEDYFWNKNVLSYDPSTNQWRNLG---ENPFLGTAGSAIVHKGNKLLLINGEIKPGLRTAEVKQYLFTG 226 (346)
T ss_pred hhhHHHHhCCChhHcCccceEEEEECCCCceeECc---cCCCCcCCCceEEEECCEEEEEeeeeCCCccchheEEEEecC
Confidence 01368999999999999987 4775 6899999999999999999865433345666665 4
Q ss_pred CCCceEeccCCCCCCCCC-------cccEEEEECCcEEEEEcCCCCCC-----------------CCCeEEEEECCCCcE
Q 005043 232 KSLTWLPLHCTGTGPSPR-------SNHVAALYDDKNLLIFGGSSKSK-----------------TLNDLYSLDFETMIW 287 (717)
Q Consensus 232 ~t~~W~~l~~~g~~P~~R-------~~~aa~~~~~~~lyV~GG~~~~~-----------------~~ndv~~yd~~t~~W 287 (717)
.+++|+.++ +||.+| ..|++++++++ |||+||.+... ....+++||+++++|
T Consensus 227 ~~~~W~~~~---~m~~~r~~~~~~~~~~~a~~~~~~-Iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~~e~yd~~~~~W 302 (346)
T TIGR03547 227 GKLEWNKLP---PLPPPKSSSQEGLAGAFAGISNGV-LLVAGGANFPGAQENYKNGKLYAHEGLIKAWSSEVYALDNGKW 302 (346)
T ss_pred CCceeeecC---CCCCCCCCccccccEEeeeEECCE-EEEeecCCCCCchhhhhcCCccccCCCCceeEeeEEEecCCcc
Confidence 677999997 666654 35557788888 99999985211 124689999999999
Q ss_pred EEeecCCCCCCCCcceEEEEECCEEEEEecCCCC-CccCeEEEEE
Q 005043 288 TRIKIRGFHPSPRAGCCGVLCGTKWYIAGGGSRK-KRHAETLIFD 331 (717)
Q Consensus 288 ~~v~~~g~~P~~R~~~sav~~~~~IyV~GG~~~~-~~~~dv~~yD 331 (717)
+.+..+ |.+|..++++.++++|||+||.+.. ..+++|+.|.
T Consensus 303 ~~~~~l---p~~~~~~~~~~~~~~iyv~GG~~~~~~~~~~v~~~~ 344 (346)
T TIGR03547 303 SKVGKL---PQGLAYGVSVSWNNGVLLIGGENSGGKAVTDVYLLS 344 (346)
T ss_pred cccCCC---CCCceeeEEEEcCCEEEEEeccCCCCCEeeeEEEEE
Confidence 999765 8889999888899999999998753 5567777664
No 18
>TIGR03548 mutarot_permut cyclically-permuted mutatrotase family protein. Members of this protein family show essentially full-length homology, cyclically permuted, to YjhT from Escherichia coli. YjhT was shown to act as a mutarotase for sialic acid, and by this ability to be able to act as a virulence factor. Members of the YjhT family (TIGR03547) and this cyclically-permuted family have multiple repeats of the beta-propeller-forming Kelch repeat.
Probab=100.00 E-value=1.6e-32 Score=296.40 Aligned_cols=260 Identities=16% Similarity=0.200 Sum_probs=200.8
Q ss_pred CCCCCEEEEEcCCCCC-------CCCccccccccccCCCCCCCCCeEEeeecCCCCCCcceeEEEEECCEEEEEcccCCC
Q 005043 38 NPNSECVAPSSNHADD-------RDCECTIAGPEVSNGTSGNSENWMVLSIAGDKPIPRFNHAAAVIGNKMIVVGGESGN 110 (717)
Q Consensus 38 ~~~~~~i~l~GG~~~~-------~~~~~~~~~~~~~~~~~~~s~~W~~l~~~g~~P~~R~~haav~~~~~lyV~GG~~~~ 110 (717)
...++.||++||.+.. +...+..++|.++. ...+..|..++ ++|.+|..+++++++++||++||.++.
T Consensus 10 ~~~~~~l~v~GG~~~~~~~~~~~g~~~~~~~v~~~~~--~~~~~~W~~~~---~lp~~r~~~~~~~~~~~lyviGG~~~~ 84 (323)
T TIGR03548 10 GIIGDYILVAGGCNFPEDPLAEGGKKKNYKGIYIAKD--ENSNLKWVKDG---QLPYEAAYGASVSVENGIYYIGGSNSS 84 (323)
T ss_pred eEECCEEEEeeccCCCCCchhhCCcEEeeeeeEEEec--CCCceeEEEcc---cCCccccceEEEEECCEEEEEcCCCCC
Confidence 3457789999995432 11234455664431 01234799987 899999989999999999999999877
Q ss_pred CCcccEEEEEcCCCce----EEccccccCCCCCCCCCCCcccceEEEEECCEEEEEeccCCCCCCceEEEEEECCCCcEE
Q 005043 111 GLLDDVQVLNFDRFSW----TAASSKLYLSPSSLPLKIPACRGHSLISWGKKVLLVGGKTDSGSDRVSVWTFDTETECWS 186 (717)
Q Consensus 111 ~~~~~v~~yd~~t~~W----~~l~~~~~~~~~~~~~~~p~r~~hs~v~~~~~Iyv~GG~~~~~~~~~~v~~yD~~t~~W~ 186 (717)
..++++++||+.+++| ..+++ +| .++..|++++++++|||+||... ....+++++||+.+++|+
T Consensus 85 ~~~~~v~~~d~~~~~w~~~~~~~~~----------lp-~~~~~~~~~~~~~~iYv~GG~~~-~~~~~~v~~yd~~~~~W~ 152 (323)
T TIGR03548 85 ERFSSVYRITLDESKEELICETIGN----------LP-FTFENGSACYKDGTLYVGGGNRN-GKPSNKSYLFNLETQEWF 152 (323)
T ss_pred CCceeEEEEEEcCCceeeeeeEcCC----------CC-cCccCceEEEECCEEEEEeCcCC-CccCceEEEEcCCCCCee
Confidence 7789999999999998 55555 33 34567899999999999999743 344789999999999999
Q ss_pred EeeecCCCC-CCceeeEEEEECCEEEEEccccCCCCCcCcEEEEEcCCCceEeccCCC--CCCCCCcccEEEEECCcEEE
Q 005043 187 VVEAKGDIP-VARSGHTVVRASSVLILFGGEDGKRRKLNDLHMFDLKSLTWLPLHCTG--TGPSPRSNHVAALYDDKNLL 263 (717)
Q Consensus 187 ~l~~~g~~P-~~R~~hs~~~~~~~Lyv~GG~~~~~~~~~~v~~yD~~t~~W~~l~~~g--~~P~~R~~~aa~~~~~~~ly 263 (717)
.+++ +| .+|..|++++++++|||+||.+.. ...++++||+.+++|+.++... ..|.++..++++++.+..||
T Consensus 153 ~~~~---~p~~~r~~~~~~~~~~~iYv~GG~~~~--~~~~~~~yd~~~~~W~~~~~~~~~~~p~~~~~~~~~~~~~~~iy 227 (323)
T TIGR03548 153 ELPD---FPGEPRVQPVCVKLQNELYVFGGGSNI--AYTDGYKYSPKKNQWQKVADPTTDSEPISLLGAASIKINESLLL 227 (323)
T ss_pred ECCC---CCCCCCCcceEEEECCEEEEEcCCCCc--cccceEEEecCCCeeEECCCCCCCCCceeccceeEEEECCCEEE
Confidence 9874 66 479999999999999999998654 3567899999999999997432 24445555665555544499
Q ss_pred EEcCCCCCC--------------------------------CCCeEEEEECCCCcEEEeecCCCCCCCCcceEEEEECCE
Q 005043 264 IFGGSSKSK--------------------------------TLNDLYSLDFETMIWTRIKIRGFHPSPRAGCCGVLCGTK 311 (717)
Q Consensus 264 V~GG~~~~~--------------------------------~~ndv~~yd~~t~~W~~v~~~g~~P~~R~~~sav~~~~~ 311 (717)
|+||.+... +.+++++||+.+++|+.++.+ +..+|.+++++.++++
T Consensus 228 v~GG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~yd~~~~~W~~~~~~--p~~~r~~~~~~~~~~~ 305 (323)
T TIGR03548 228 CIGGFNKDVYNDAVIDLATMKDESLKGYKKEYFLKPPEWYNWNRKILIYNVRTGKWKSIGNS--PFFARCGAALLLTGNN 305 (323)
T ss_pred EECCcCHHHHHHHHhhhhhccchhhhhhHHHHhCCCccccCcCceEEEEECCCCeeeEcccc--cccccCchheEEECCE
Confidence 999986421 247899999999999999754 2258999999999999
Q ss_pred EEEEecCCCC
Q 005043 312 WYIAGGGSRK 321 (717)
Q Consensus 312 IyV~GG~~~~ 321 (717)
||++||....
T Consensus 306 iyv~GG~~~p 315 (323)
T TIGR03548 306 IFSINGELKP 315 (323)
T ss_pred EEEEeccccC
Confidence 9999997543
No 19
>PRK14131 N-acetylneuraminic acid mutarotase; Provisional
Probab=100.00 E-value=2.5e-32 Score=300.81 Aligned_cols=272 Identities=20% Similarity=0.266 Sum_probs=206.8
Q ss_pred ccCCCCCEEEEEcCCCCCCCCccccccccccCCCCCCCCCeEEeeecCCCC-CCcceeEEEEECCEEEEEcccCC-----
Q 005043 36 NSNPNSECVAPSSNHADDRDCECTIAGPEVSNGTSGNSENWMVLSIAGDKP-IPRFNHAAAVIGNKMIVVGGESG----- 109 (717)
Q Consensus 36 ~s~~~~~~i~l~GG~~~~~~~~~~~~~~~~~~~~~~~s~~W~~l~~~g~~P-~~R~~haav~~~~~lyV~GG~~~----- 109 (717)
+.+..++.||++||..... ..+++++ ..++.|..++ ++| .+|.++++++++++|||+||...
T Consensus 33 ~~~~~~~~iyv~gG~~~~~-----~~~~d~~----~~~~~W~~l~---~~p~~~r~~~~~v~~~~~IYV~GG~~~~~~~~ 100 (376)
T PRK14131 33 TGAIDNNTVYVGLGSAGTS-----WYKLDLN----APSKGWTKIA---AFPGGPREQAVAAFIDGKLYVFGGIGKTNSEG 100 (376)
T ss_pred eEEEECCEEEEEeCCCCCe-----EEEEECC----CCCCCeEECC---cCCCCCcccceEEEECCEEEEEcCCCCCCCCC
Confidence 3444578899999953221 1234431 1467899997 666 58999999999999999999864
Q ss_pred -CCCcccEEEEEcCCCceEEccccccCCCCCCCCCCCcccceEEEE-ECCEEEEEeccCCCC------------------
Q 005043 110 -NGLLDDVQVLNFDRFSWTAASSKLYLSPSSLPLKIPACRGHSLIS-WGKKVLLVGGKTDSG------------------ 169 (717)
Q Consensus 110 -~~~~~~v~~yd~~t~~W~~l~~~~~~~~~~~~~~~p~r~~hs~v~-~~~~Iyv~GG~~~~~------------------ 169 (717)
...++++|+||+.+++|..+++. .+..+.+|++++ .+++||++||.....
T Consensus 101 ~~~~~~~v~~YD~~~n~W~~~~~~----------~p~~~~~~~~~~~~~~~IYv~GG~~~~~~~~~~~d~~~~~~~~~~~ 170 (376)
T PRK14131 101 SPQVFDDVYKYDPKTNSWQKLDTR----------SPVGLAGHVAVSLHNGKAYITGGVNKNIFDGYFEDLAAAGKDKTPK 170 (376)
T ss_pred ceeEcccEEEEeCCCCEEEeCCCC----------CCCcccceEEEEeeCCEEEEECCCCHHHHHHHHhhhhhcccchhhh
Confidence 13468999999999999999752 133455677776 799999999975310
Q ss_pred ---------------CCceEEEEEECCCCcEEEeeecCCCCC-CceeeEEEEECCEEEEEccccCCCCCcCcEE--EEEc
Q 005043 170 ---------------SDRVSVWTFDTETECWSVVEAKGDIPV-ARSGHTVVRASSVLILFGGEDGKRRKLNDLH--MFDL 231 (717)
Q Consensus 170 ---------------~~~~~v~~yD~~t~~W~~l~~~g~~P~-~R~~hs~~~~~~~Lyv~GG~~~~~~~~~~v~--~yD~ 231 (717)
...+++++||+.+++|+.+++ +|. +|.+|+++.++++|||+||....+....+++ .||+
T Consensus 171 ~~i~~~~~~~~~~~~~~~~~v~~YD~~t~~W~~~~~---~p~~~~~~~a~v~~~~~iYv~GG~~~~~~~~~~~~~~~~~~ 247 (376)
T PRK14131 171 DKINDAYFDKKPEDYFFNKEVLSYDPSTNQWKNAGE---SPFLGTAGSAVVIKGNKLWLINGEIKPGLRTDAVKQGKFTG 247 (376)
T ss_pred hhhHHHHhcCChhhcCcCceEEEEECCCCeeeECCc---CCCCCCCcceEEEECCEEEEEeeeECCCcCChhheEEEecC
Confidence 014689999999999999874 775 7889999999999999999865443445555 4577
Q ss_pred CCCceEeccCCCCCCCCCcc--------cEEEEECCcEEEEEcCCCCCC-----------------CCCeEEEEECCCCc
Q 005043 232 KSLTWLPLHCTGTGPSPRSN--------HVAALYDDKNLLIFGGSSKSK-----------------TLNDLYSLDFETMI 286 (717)
Q Consensus 232 ~t~~W~~l~~~g~~P~~R~~--------~aa~~~~~~~lyV~GG~~~~~-----------------~~ndv~~yd~~t~~ 286 (717)
++++|..+. ++|.+|.. +.+++++++ |||+||.+... ....+++||+++++
T Consensus 248 ~~~~W~~~~---~~p~~~~~~~~~~~~~~~a~~~~~~-iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~~e~yd~~~~~ 323 (376)
T PRK14131 248 NNLKWQKLP---DLPPAPGGSSQEGVAGAFAGYSNGV-LLVAGGANFPGARENYQNGKLYAHEGLKKSWSDEIYALVNGK 323 (376)
T ss_pred CCcceeecC---CCCCCCcCCcCCccceEeceeECCE-EEEeeccCCCCChhhhhcCCcccccCCcceeehheEEecCCc
Confidence 899999997 67776642 235667887 99999975311 11347899999999
Q ss_pred EEEeecCCCCCCCCcceEEEEECCEEEEEecCCC-CCccCeEEEEECCCCcEEE
Q 005043 287 WTRIKIRGFHPSPRAGCCGVLCGTKWYIAGGGSR-KKRHAETLIFDILKGEWSV 339 (717)
Q Consensus 287 W~~v~~~g~~P~~R~~~sav~~~~~IyV~GG~~~-~~~~~dv~~yD~~t~~W~~ 339 (717)
|+.+..+ |.+|..++++.++++|||+||... ....+++++|++..+.|+.
T Consensus 324 W~~~~~l---p~~r~~~~av~~~~~iyv~GG~~~~~~~~~~v~~~~~~~~~~~~ 374 (376)
T PRK14131 324 WQKVGEL---PQGLAYGVSVSWNNGVLLIGGETAGGKAVSDVTLLSWDGKKLTV 374 (376)
T ss_pred ccccCcC---CCCccceEEEEeCCEEEEEcCCCCCCcEeeeEEEEEEcCCEEEE
Confidence 9988654 889999999999999999999864 3567899999999888765
No 20
>KOG4152 consensus Host cell transcription factor HCFC1 [Cell cycle control, cell division, chromosome partitioning; Transcription]
Probab=100.00 E-value=2.7e-32 Score=289.13 Aligned_cols=304 Identities=25% Similarity=0.487 Sum_probs=251.2
Q ss_pred CCCCeEEeee-cCCCCCCcceeEEEEECCEEEEEcccCCCCCcccEEEEEcCCCceEEccccccCCCCCCCCCCCcccce
Q 005043 72 NSENWMVLSI-AGDKPIPRFNHAAAVIGNKMIVVGGESGNGLLDDVQVLNFDRFSWTAASSKLYLSPSSLPLKIPACRGH 150 (717)
Q Consensus 72 ~s~~W~~l~~-~g~~P~~R~~haav~~~~~lyV~GG~~~~~~~~~v~~yd~~t~~W~~l~~~~~~~~~~~~~~~p~r~~h 150 (717)
.--+|+.+.. .|+.|.||.+|-++++..-|+||||- +.+..+++.+||..++.|..-+.-. .-+|++..|
T Consensus 15 ~~~rWrrV~~~tGPvPrpRHGHRAVaikELiviFGGG-NEGiiDELHvYNTatnqWf~PavrG--------DiPpgcAA~ 85 (830)
T KOG4152|consen 15 NVVRWRRVQQSTGPVPRPRHGHRAVAIKELIVIFGGG-NEGIIDELHVYNTATNQWFAPAVRG--------DIPPGCAAF 85 (830)
T ss_pred cccceEEEecccCCCCCccccchheeeeeeEEEecCC-cccchhhhhhhccccceeecchhcC--------CCCCchhhc
Confidence 3467998865 67889999999999999999999994 4567899999999999998765431 345678889
Q ss_pred EEEEECCEEEEEeccCCCCCCceEEEEEECCCCcEEEeee----cCCCCCCceeeEEEEECCEEEEEccccCC-------
Q 005043 151 SLISWGKKVLLVGGKTDSGSDRVSVWTFDTETECWSVVEA----KGDIPVARSGHTVVRASSVLILFGGEDGK------- 219 (717)
Q Consensus 151 s~v~~~~~Iyv~GG~~~~~~~~~~v~~yD~~t~~W~~l~~----~g~~P~~R~~hs~~~~~~~Lyv~GG~~~~------- 219 (717)
+++..+.+||+|||+..-+.+.|++|.+-...-.|.++.+ .|..|.+|.+|+...++++.|+|||..++
T Consensus 86 GfvcdGtrilvFGGMvEYGkYsNdLYELQasRWeWkrlkp~~p~nG~pPCPRlGHSFsl~gnKcYlFGGLaNdseDpknN 165 (830)
T KOG4152|consen 86 GFVCDGTRILVFGGMVEYGKYSNDLYELQASRWEWKRLKPKTPKNGPPPCPRLGHSFSLVGNKCYLFGGLANDSEDPKNN 165 (830)
T ss_pred ceEecCceEEEEccEeeeccccchHHHhhhhhhhHhhcCCCCCCCCCCCCCccCceeEEeccEeEEeccccccccCcccc
Confidence 9999999999999999988888888877666666777754 36689999999999999999999997432
Q ss_pred -CCCcCcEEEEEcCCC----ceEeccCCCCCCCCCcccEEEEECC-----cEEEEEcCCCCCCCCCeEEEEECCCCcEEE
Q 005043 220 -RRKLNDLHMFDLKSL----TWLPLHCTGTGPSPRSNHVAALYDD-----KNLLIFGGSSKSKTLNDLYSLDFETMIWTR 289 (717)
Q Consensus 220 -~~~~~~v~~yD~~t~----~W~~l~~~g~~P~~R~~~aa~~~~~-----~~lyV~GG~~~~~~~ndv~~yd~~t~~W~~ 289 (717)
..+++|+|++++.-+ .|....+.|.+|.+|..|+++++-. ..+|||||.++. .+.|+|.+|+++.+|.+
T Consensus 166 vPrYLnDlY~leL~~Gsgvv~W~ip~t~Gv~P~pRESHTAViY~eKDs~~skmvvyGGM~G~-RLgDLW~Ldl~Tl~W~k 244 (830)
T KOG4152|consen 166 VPRYLNDLYILELRPGSGVVAWDIPITYGVLPPPRESHTAVIYTEKDSKKSKMVVYGGMSGC-RLGDLWTLDLDTLTWNK 244 (830)
T ss_pred cchhhcceEEEEeccCCceEEEecccccCCCCCCcccceeEEEEeccCCcceEEEEcccccc-cccceeEEecceeeccc
Confidence 248999999998744 4999988999999999999999821 159999999764 57899999999999999
Q ss_pred eecCCCCCCCCcceEEEEECCEEEEEecCCC------C--------CccCeEEEEECCCCcEEEeecCC---CCCCCCCc
Q 005043 290 IKIRGFHPSPRAGCCGVLCGTKWYIAGGGSR------K--------KRHAETLIFDILKGEWSVAITSP---SSSVTSNK 352 (717)
Q Consensus 290 v~~~g~~P~~R~~~sav~~~~~IyV~GG~~~------~--------~~~~dv~~yD~~t~~W~~l~~~p---~~~~~~r~ 352 (717)
....|..|.||.-|+++.+++++|||||.-- . ...+.+-++|+++..|..+.... ...|.+|.
T Consensus 245 p~~~G~~PlPRSLHsa~~IGnKMyvfGGWVPl~~~~~~~~~hekEWkCTssl~clNldt~~W~tl~~d~~ed~tiPR~RA 324 (830)
T KOG4152|consen 245 PSLSGVAPLPRSLHSATTIGNKMYVFGGWVPLVMDDVKVATHEKEWKCTSSLACLNLDTMAWETLLMDTLEDNTIPRARA 324 (830)
T ss_pred ccccCCCCCCcccccceeecceeEEecceeeeeccccccccccceeeeccceeeeeecchheeeeeeccccccccccccc
Confidence 9999999999999999999999999999621 0 23466779999999999875422 12688999
Q ss_pred ceEEEEEEeCCCcEEEEEcCCCCCC--------CCeEEEEEccCC
Q 005043 353 GFTLVLVQHKEKDFLVAFGGIKKEP--------SNQVEVLSIEKN 389 (717)
Q Consensus 353 g~s~v~v~~~~~~~I~v~GG~~~~~--------~n~v~vyd~~~~ 389 (717)
||+++++ +.++|+..|+++.. ..|+|.+|.+.-
T Consensus 325 GHCAvAi----gtRlYiWSGRDGYrKAwnnQVCCkDlWyLdTekP 365 (830)
T KOG4152|consen 325 GHCAVAI----GTRLYIWSGRDGYRKAWNNQVCCKDLWYLDTEKP 365 (830)
T ss_pred cceeEEe----ccEEEEEeccchhhHhhccccchhhhhhhcccCC
Confidence 9999999 78999999998653 345666665443
No 21
>PHA02790 Kelch-like protein; Provisional
Probab=100.00 E-value=2.8e-31 Score=301.02 Aligned_cols=211 Identities=16% Similarity=0.234 Sum_probs=186.6
Q ss_pred EEEECCEEEEEcccCCCCCcccEEEEEcCCCceEEccccccCCCCCCCCCCCcccceEEEEECCEEEEEeccCCCCCCce
Q 005043 94 AAVIGNKMIVVGGESGNGLLDDVQVLNFDRFSWTAASSKLYLSPSSLPLKIPACRGHSLISWGKKVLLVGGKTDSGSDRV 173 (717)
Q Consensus 94 av~~~~~lyV~GG~~~~~~~~~v~~yd~~t~~W~~l~~~~~~~~~~~~~~~p~r~~hs~v~~~~~Iyv~GG~~~~~~~~~ 173 (717)
++.+++.||++||.++....+++++||+.+++|..++++ + .+|..+++++++++||++||... .+
T Consensus 267 ~~~~~~~lyviGG~~~~~~~~~v~~Ydp~~~~W~~~~~m----------~-~~r~~~~~v~~~~~iYviGG~~~----~~ 331 (480)
T PHA02790 267 STHVGEVVYLIGGWMNNEIHNNAIAVNYISNNWIPIPPM----------N-SPRLYASGVPANNKLYVVGGLPN----PT 331 (480)
T ss_pred eEEECCEEEEEcCCCCCCcCCeEEEEECCCCEEEECCCC----------C-chhhcceEEEECCEEEEECCcCC----CC
Confidence 355899999999987777788999999999999999984 3 35667888999999999999753 24
Q ss_pred EEEEEECCCCcEEEeeecCCCCCCceeeEEEEECCEEEEEccccCCCCCcCcEEEEEcCCCceEeccCCCCCCCCCcccE
Q 005043 174 SVWTFDTETECWSVVEAKGDIPVARSGHTVVRASSVLILFGGEDGKRRKLNDLHMFDLKSLTWLPLHCTGTGPSPRSNHV 253 (717)
Q Consensus 174 ~v~~yD~~t~~W~~l~~~g~~P~~R~~hs~~~~~~~Lyv~GG~~~~~~~~~~v~~yD~~t~~W~~l~~~g~~P~~R~~~a 253 (717)
++++||+.+++|+.++ +||.+|.+|++++++++||++||.+.. .+.+++|||.+++|+.++ ++|.+|..++
T Consensus 332 sve~ydp~~n~W~~~~---~l~~~r~~~~~~~~~g~IYviGG~~~~---~~~ve~ydp~~~~W~~~~---~m~~~r~~~~ 402 (480)
T PHA02790 332 SVERWFHGDAAWVNMP---SLLKPRCNPAVASINNVIYVIGGHSET---DTTTEYLLPNHDQWQFGP---STYYPHYKSC 402 (480)
T ss_pred ceEEEECCCCeEEECC---CCCCCCcccEEEEECCEEEEecCcCCC---CccEEEEeCCCCEEEeCC---CCCCccccce
Confidence 6999999999999988 499999999999999999999998643 367999999999999987 8999999999
Q ss_pred EEEECCcEEEEEcCCCCCCCCCeEEEEECCCCcEEEeecCCCCCCCCcceEEEEECCEEEEEecCCCCCccCeEEEEECC
Q 005043 254 AALYDDKNLLIFGGSSKSKTLNDLYSLDFETMIWTRIKIRGFHPSPRAGCCGVLCGTKWYIAGGGSRKKRHAETLIFDIL 333 (717)
Q Consensus 254 a~~~~~~~lyV~GG~~~~~~~ndv~~yd~~t~~W~~v~~~g~~P~~R~~~sav~~~~~IyV~GG~~~~~~~~dv~~yD~~ 333 (717)
+++++++ |||+||. +++||+++++|+.++++ |.+|.++++++++|+|||+||.+.....+.+++||+.
T Consensus 403 ~~~~~~~-IYv~GG~--------~e~ydp~~~~W~~~~~m---~~~r~~~~~~v~~~~IYviGG~~~~~~~~~ve~Yd~~ 470 (480)
T PHA02790 403 ALVFGRR-LFLVGRN--------AEFYCESSNTWTLIDDP---IYPRDNPELIIVDNKLLLIGGFYRGSYIDTIEVYNNR 470 (480)
T ss_pred EEEECCE-EEEECCc--------eEEecCCCCcEeEcCCC---CCCccccEEEEECCEEEEECCcCCCcccceEEEEECC
Confidence 9999998 9999984 68899999999999765 8899999999999999999998765556789999999
Q ss_pred CCcEEEe
Q 005043 334 KGEWSVA 340 (717)
Q Consensus 334 t~~W~~l 340 (717)
+++|+..
T Consensus 471 ~~~W~~~ 477 (480)
T PHA02790 471 TYSWNIW 477 (480)
T ss_pred CCeEEec
Confidence 9999874
No 22
>KOG0379 consensus Kelch repeat-containing proteins [General function prediction only]
Probab=99.98 E-value=3.5e-31 Score=299.14 Aligned_cols=246 Identities=33% Similarity=0.544 Sum_probs=222.4
Q ss_pred CCCCcccceEEEEECCEEEEEeccCCCCCCce-EEEEEECCCCcEEEeeecCCCCCCceeeEEEEECCEEEEEccccCCC
Q 005043 142 LKIPACRGHSLISWGKKVLLVGGKTDSGSDRV-SVWTFDTETECWSVVEAKGDIPVARSGHTVVRASSVLILFGGEDGKR 220 (717)
Q Consensus 142 ~~~p~r~~hs~v~~~~~Iyv~GG~~~~~~~~~-~v~~yD~~t~~W~~l~~~g~~P~~R~~hs~~~~~~~Lyv~GG~~~~~ 220 (717)
..+.+|.+|+++.+++++|||||........+ ++|++|..+..|....+.+..|.+|++|+++.++++||+|||.+...
T Consensus 56 ~~p~~R~~hs~~~~~~~~~vfGG~~~~~~~~~~dl~~~d~~~~~w~~~~~~g~~p~~r~g~~~~~~~~~l~lfGG~~~~~ 135 (482)
T KOG0379|consen 56 VGPIPRAGHSAVLIGNKLYVFGGYGSGDRLTDLDLYVLDLESQLWTKPAATGDEPSPRYGHSLSAVGDKLYLFGGTDKKY 135 (482)
T ss_pred CCcchhhccceeEECCEEEEECCCCCCCccccceeEEeecCCcccccccccCCCCCcccceeEEEECCeEEEEccccCCC
Confidence 34667899999999999999999876544333 69999999999999999999999999999999999999999998655
Q ss_pred CCcCcEEEEEcCCCceEeccCCCCCCCCCcccEEEEECCcEEEEEcCCCCCC-CCCeEEEEECCCCcEEEeecCCCCCCC
Q 005043 221 RKLNDLHMFDLKSLTWLPLHCTGTGPSPRSNHVAALYDDKNLLIFGGSSKSK-TLNDLYSLDFETMIWTRIKIRGFHPSP 299 (717)
Q Consensus 221 ~~~~~v~~yD~~t~~W~~l~~~g~~P~~R~~~aa~~~~~~~lyV~GG~~~~~-~~ndv~~yd~~t~~W~~v~~~g~~P~~ 299 (717)
..+++++.||+.|.+|..+.+.+..|.+|.+|++++++++ +|||||.+... ..|++|+||+++.+|.++...|..|.|
T Consensus 136 ~~~~~l~~~d~~t~~W~~l~~~~~~P~~r~~Hs~~~~g~~-l~vfGG~~~~~~~~ndl~i~d~~~~~W~~~~~~g~~P~p 214 (482)
T KOG0379|consen 136 RNLNELHSLDLSTRTWSLLSPTGDPPPPRAGHSATVVGTK-LVVFGGIGGTGDSLNDLHIYDLETSTWSELDTQGEAPSP 214 (482)
T ss_pred CChhheEeccCCCCcEEEecCcCCCCCCcccceEEEECCE-EEEECCccCcccceeeeeeeccccccceecccCCCCCCC
Confidence 6689999999999999999999999999999999999977 99999998765 899999999999999999999999999
Q ss_pred CcceEEEEECCEEEEEecCC-CCCccCeEEEEECCCCcEEEeecCCCCCCCCCcceEEEEEEeCCCcEEEEEcCCCCC--
Q 005043 300 RAGCCGVLCGTKWYIAGGGS-RKKRHAETLIFDILKGEWSVAITSPSSSVTSNKGFTLVLVQHKEKDFLVAFGGIKKE-- 376 (717)
Q Consensus 300 R~~~sav~~~~~IyV~GG~~-~~~~~~dv~~yD~~t~~W~~l~~~p~~~~~~r~g~s~v~v~~~~~~~I~v~GG~~~~-- 376 (717)
|.+|++++++++++||||.+ +...++|+|.||+.+..|..+. .....|.+|.+|++++. +++++++||....
T Consensus 215 R~gH~~~~~~~~~~v~gG~~~~~~~l~D~~~ldl~~~~W~~~~-~~g~~p~~R~~h~~~~~----~~~~~l~gG~~~~~~ 289 (482)
T KOG0379|consen 215 RYGHAMVVVGNKLLVFGGGDDGDVYLNDVHILDLSTWEWKLLP-TGGDLPSPRSGHSLTVS----GDHLLLFGGGTDPKQ 289 (482)
T ss_pred CCCceEEEECCeEEEEeccccCCceecceEeeecccceeeecc-ccCCCCCCcceeeeEEE----CCEEEEEcCCccccc
Confidence 99999999999999999998 7788999999999999999654 34567899999999966 8899999999763
Q ss_pred -CCCeEEEEEccCCcccC
Q 005043 377 -PSNQVEVLSIEKNESSM 393 (717)
Q Consensus 377 -~~n~v~vyd~~~~eW~~ 393 (717)
++.++|.|++.+..|..
T Consensus 290 ~~l~~~~~l~~~~~~w~~ 307 (482)
T KOG0379|consen 290 EPLGDLYGLDLETLVWSK 307 (482)
T ss_pred ccccccccccccccceee
Confidence 68999999999998865
No 23
>PHA02790 Kelch-like protein; Provisional
Probab=99.97 E-value=3.7e-30 Score=291.79 Aligned_cols=209 Identities=16% Similarity=0.272 Sum_probs=182.7
Q ss_pred EEEECCEEEEEeccCCCCCCceEEEEEECCCCcEEEeeecCCCCCCceeeEEEEECCEEEEEccccCCCCCcCcEEEEEc
Q 005043 152 LISWGKKVLLVGGKTDSGSDRVSVWTFDTETECWSVVEAKGDIPVARSGHTVVRASSVLILFGGEDGKRRKLNDLHMFDL 231 (717)
Q Consensus 152 ~v~~~~~Iyv~GG~~~~~~~~~~v~~yD~~t~~W~~l~~~g~~P~~R~~hs~~~~~~~Lyv~GG~~~~~~~~~~v~~yD~ 231 (717)
.+..++.||++||... ....+++++||+.+++|..+++ ||.+|..++++.++++||++||.+.. +.+++||+
T Consensus 267 ~~~~~~~lyviGG~~~-~~~~~~v~~Ydp~~~~W~~~~~---m~~~r~~~~~v~~~~~iYviGG~~~~----~sve~ydp 338 (480)
T PHA02790 267 STHVGEVVYLIGGWMN-NEIHNNAIAVNYISNNWIPIPP---MNSPRLYASGVPANNKLYVVGGLPNP----TSVERWFH 338 (480)
T ss_pred eEEECCEEEEEcCCCC-CCcCCeEEEEECCCCEEEECCC---CCchhhcceEEEECCEEEEECCcCCC----CceEEEEC
Confidence 4558999999999854 3456789999999999999984 89999999999999999999997532 56899999
Q ss_pred CCCceEeccCCCCCCCCCcccEEEEECCcEEEEEcCCCCCCCCCeEEEEECCCCcEEEeecCCCCCCCCcceEEEEECCE
Q 005043 232 KSLTWLPLHCTGTGPSPRSNHVAALYDDKNLLIFGGSSKSKTLNDLYSLDFETMIWTRIKIRGFHPSPRAGCCGVLCGTK 311 (717)
Q Consensus 232 ~t~~W~~l~~~g~~P~~R~~~aa~~~~~~~lyV~GG~~~~~~~ndv~~yd~~t~~W~~v~~~g~~P~~R~~~sav~~~~~ 311 (717)
.+++|+.++ ++|.+|..|++++++++ ||++||.... .+.+++|||.+++|+.++++ |.+|.+++++.++++
T Consensus 339 ~~n~W~~~~---~l~~~r~~~~~~~~~g~-IYviGG~~~~--~~~ve~ydp~~~~W~~~~~m---~~~r~~~~~~~~~~~ 409 (480)
T PHA02790 339 GDAAWVNMP---SLLKPRCNPAVASINNV-IYVIGGHSET--DTTTEYLLPNHDQWQFGPST---YYPHYKSCALVFGRR 409 (480)
T ss_pred CCCeEEECC---CCCCCCcccEEEEECCE-EEEecCcCCC--CccEEEEeCCCCEEEeCCCC---CCccccceEEEECCE
Confidence 999999997 89999999999999998 9999998643 36799999999999998765 889999999999999
Q ss_pred EEEEecCCCCCccCeEEEEECCCCcEEEeecCCCCCCCCCcceEEEEEEeCCCcEEEEEcCCCCCC-CCeEEEEEccCCc
Q 005043 312 WYIAGGGSRKKRHAETLIFDILKGEWSVAITSPSSSVTSNKGFTLVLVQHKEKDFLVAFGGIKKEP-SNQVEVLSIEKNE 390 (717)
Q Consensus 312 IyV~GG~~~~~~~~dv~~yD~~t~~W~~l~~~p~~~~~~r~g~s~v~v~~~~~~~I~v~GG~~~~~-~n~v~vyd~~~~e 390 (717)
|||+||. +.+||+.+++|+.++ + ++.+|.+++++++ +++||++||+++.. .+.+++||+.+++
T Consensus 410 IYv~GG~--------~e~ydp~~~~W~~~~--~--m~~~r~~~~~~v~----~~~IYviGG~~~~~~~~~ve~Yd~~~~~ 473 (480)
T PHA02790 410 LFLVGRN--------AEFYCESSNTWTLID--D--PIYPRDNPELIIV----DNKLLLIGGFYRGSYIDTIEVYNNRTYS 473 (480)
T ss_pred EEEECCc--------eEEecCCCCcEeEcC--C--CCCCccccEEEEE----CCEEEEECCcCCCcccceEEEEECCCCe
Confidence 9999983 578999999999987 2 3568889999988 78999999986443 6789999999999
Q ss_pred ccC
Q 005043 391 SSM 393 (717)
Q Consensus 391 W~~ 393 (717)
|..
T Consensus 474 W~~ 476 (480)
T PHA02790 474 WNI 476 (480)
T ss_pred EEe
Confidence 976
No 24
>KOG1230 consensus Protein containing repeated kelch motifs [General function prediction only]
Probab=99.97 E-value=5.9e-31 Score=274.26 Aligned_cols=247 Identities=30% Similarity=0.528 Sum_probs=210.8
Q ss_pred CCCCCcceeEEEEEC--CEEEEEcccCCCC----CcccEEEEEcCCCceEEccccccCCCCCCCCCCCcccceEEEEEC-
Q 005043 84 DKPIPRFNHAAAVIG--NKMIVVGGESGNG----LLDDVQVLNFDRFSWTAASSKLYLSPSSLPLKIPACRGHSLISWG- 156 (717)
Q Consensus 84 ~~P~~R~~haav~~~--~~lyV~GG~~~~~----~~~~v~~yd~~t~~W~~l~~~~~~~~~~~~~~~p~r~~hs~v~~~- 156 (717)
++|.||.+..++... +.|++|||.--++ .+|++|.||..+++|..+... .++|+|.+|.++++.
T Consensus 62 ~~PspRsn~sl~~nPekeELilfGGEf~ngqkT~vYndLy~Yn~k~~eWkk~~sp---------n~P~pRsshq~va~~s 132 (521)
T KOG1230|consen 62 PPPSPRSNPSLFANPEKEELILFGGEFYNGQKTHVYNDLYSYNTKKNEWKKVVSP---------NAPPPRSSHQAVAVPS 132 (521)
T ss_pred CCCCCCCCcceeeccCcceeEEecceeecceeEEEeeeeeEEeccccceeEeccC---------CCcCCCccceeEEecc
Confidence 678899999988763 5699999953222 479999999999999998762 456778888888885
Q ss_pred CEEEEEeccCCCCC-----CceEEEEEECCCCcEEEeeecCCCCCCceeeEEEEECCEEEEEccccCC---CCCcCcEEE
Q 005043 157 KKVLLVGGKTDSGS-----DRVSVWTFDTETECWSVVEAKGDIPVARSGHTVVRASSVLILFGGEDGK---RRKLNDLHM 228 (717)
Q Consensus 157 ~~Iyv~GG~~~~~~-----~~~~v~~yD~~t~~W~~l~~~g~~P~~R~~hs~~~~~~~Lyv~GG~~~~---~~~~~~v~~ 228 (717)
+.+|+|||.-...+ ...++|+||+.+++|+++...| .|.+|++|.|++...+|+||||+... ..++||+|+
T Consensus 133 ~~l~~fGGEfaSPnq~qF~HYkD~W~fd~~trkweql~~~g-~PS~RSGHRMvawK~~lilFGGFhd~nr~y~YyNDvy~ 211 (521)
T KOG1230|consen 133 NILWLFGGEFASPNQEQFHHYKDLWLFDLKTRKWEQLEFGG-GPSPRSGHRMVAWKRQLILFGGFHDSNRDYIYYNDVYA 211 (521)
T ss_pred CeEEEeccccCCcchhhhhhhhheeeeeeccchheeeccCC-CCCCCccceeEEeeeeEEEEcceecCCCceEEeeeeEE
Confidence 89999999754221 2458999999999999999766 79999999999999999999998544 358999999
Q ss_pred EEcCCCceEeccCCCCCCCCCcccEEEEE-CCcEEEEEcCCCC---------CCCCCeEEEEECCC-----CcEEEeecC
Q 005043 229 FDLKSLTWLPLHCTGTGPSPRSNHVAALY-DDKNLLIFGGSSK---------SKTLNDLYSLDFET-----MIWTRIKIR 293 (717)
Q Consensus 229 yD~~t~~W~~l~~~g~~P~~R~~~aa~~~-~~~~lyV~GG~~~---------~~~~ndv~~yd~~t-----~~W~~v~~~ 293 (717)
||+.+.+|+++.+.|..|.||.+|++.+. .+. |||+|||+. +...+|+|.+++++ ..|+.+.+.
T Consensus 212 FdLdtykW~Klepsga~PtpRSGcq~~vtpqg~-i~vyGGYsK~~~kK~~dKG~~hsDmf~L~p~~~~~dKw~W~kvkp~ 290 (521)
T KOG1230|consen 212 FDLDTYKWSKLEPSGAGPTPRSGCQFSVTPQGG-IVVYGGYSKQRVKKDVDKGTRHSDMFLLKPEDGREDKWVWTKVKPS 290 (521)
T ss_pred EeccceeeeeccCCCCCCCCCCcceEEecCCCc-EEEEcchhHhhhhhhhhcCceeeeeeeecCCcCCCcceeEeeccCC
Confidence 99999999999998899999999999999 666 999999953 45688999999988 889999999
Q ss_pred CCCCCCCcceEEEEE-CCEEEEEecCCC---------CCccCeEEEEECCCCcEEEee
Q 005043 294 GFHPSPRAGCCGVLC-GTKWYIAGGGSR---------KKRHAETLIFDILKGEWSVAI 341 (717)
Q Consensus 294 g~~P~~R~~~sav~~-~~~IyV~GG~~~---------~~~~~dv~~yD~~t~~W~~l~ 341 (717)
|..|.||.++++++. +++-|.|||... ....+++|.||+..++|....
T Consensus 291 g~kPspRsgfsv~va~n~kal~FGGV~D~eeeeEsl~g~F~NDLy~fdlt~nrW~~~q 348 (521)
T KOG1230|consen 291 GVKPSPRSGFSVAVAKNHKALFFGGVCDLEEEEESLSGEFFNDLYFFDLTRNRWSEGQ 348 (521)
T ss_pred CCCCCCCCceeEEEecCCceEEecceecccccchhhhhhhhhhhhheecccchhhHhh
Confidence 999999999999887 569999999754 235789999999999998864
No 25
>KOG1230 consensus Protein containing repeated kelch motifs [General function prediction only]
Probab=99.97 E-value=3.4e-29 Score=261.21 Aligned_cols=237 Identities=24% Similarity=0.438 Sum_probs=198.5
Q ss_pred CEEEEEcC-CCCCCCCccccccccccCCCCCCCCCeEEeeecCCCCCCcceeEEEEEC-CEEEEEcccC--CCC----Cc
Q 005043 42 ECVAPSSN-HADDRDCECTIAGPEVSNGTSGNSENWMVLSIAGDKPIPRFNHAAAVIG-NKMIVVGGES--GNG----LL 113 (717)
Q Consensus 42 ~~i~l~GG-~~~~~~~~~~~~~~~~~~~~~~~s~~W~~l~~~g~~P~~R~~haav~~~-~~lyV~GG~~--~~~----~~ 113 (717)
+.+++||| ..++......++.|..++ ..+.|..+.. .+.|+||+.|++|++. |.+|||||.- .++ .+
T Consensus 79 eELilfGGEf~ngqkT~vYndLy~Yn~----k~~eWkk~~s-pn~P~pRsshq~va~~s~~l~~fGGEfaSPnq~qF~HY 153 (521)
T KOG1230|consen 79 EELILFGGEFYNGQKTHVYNDLYSYNT----KKNEWKKVVS-PNAPPPRSSHQAVAVPSNILWLFGGEFASPNQEQFHHY 153 (521)
T ss_pred ceeEEecceeecceeEEEeeeeeEEec----cccceeEecc-CCCcCCCccceeEEeccCeEEEeccccCCcchhhhhhh
Confidence 45999999 333444444555565554 8999999864 3678899999999986 8999999963 222 36
Q ss_pred ccEEEEEcCCCceEEccccccCCCCCCCCCCCcccceEEEEECCEEEEEeccCCCC---CCceEEEEEECCCCcEEEeee
Q 005043 114 DDVQVLNFDRFSWTAASSKLYLSPSSLPLKIPACRGHSLISWGKKVLLVGGKTDSG---SDRVSVWTFDTETECWSVVEA 190 (717)
Q Consensus 114 ~~v~~yd~~t~~W~~l~~~~~~~~~~~~~~~p~r~~hs~v~~~~~Iyv~GG~~~~~---~~~~~v~~yD~~t~~W~~l~~ 190 (717)
.|+|+||+.+++|.++... ..+.+|.+|.++++..+|++|||..+.. .+.|+||+||+.|-+|+.+.+
T Consensus 154 kD~W~fd~~trkweql~~~---------g~PS~RSGHRMvawK~~lilFGGFhd~nr~y~YyNDvy~FdLdtykW~Klep 224 (521)
T KOG1230|consen 154 KDLWLFDLKTRKWEQLEFG---------GGPSPRSGHRMVAWKRQLILFGGFHDSNRDYIYYNDVYAFDLDTYKWSKLEP 224 (521)
T ss_pred hheeeeeeccchheeeccC---------CCCCCCccceeEEeeeeEEEEcceecCCCceEEeeeeEEEeccceeeeeccC
Confidence 8999999999999999874 4466899999999999999999987643 358899999999999999999
Q ss_pred cCCCCCCceeeEEEEE-CCEEEEEccccC--------CCCCcCcEEEEEcCC-----CceEeccCCCCCCCCCcccEEEE
Q 005043 191 KGDIPVARSGHTVVRA-SSVLILFGGEDG--------KRRKLNDLHMFDLKS-----LTWLPLHCTGTGPSPRSNHVAAL 256 (717)
Q Consensus 191 ~g~~P~~R~~hs~~~~-~~~Lyv~GG~~~--------~~~~~~~v~~yD~~t-----~~W~~l~~~g~~P~~R~~~aa~~ 256 (717)
.|..|.+|++|++.+. .|.|||+||+.. .+...+|+|.+++.. ..|+++.+.|.-|.||.++++++
T Consensus 225 sga~PtpRSGcq~~vtpqg~i~vyGGYsK~~~kK~~dKG~~hsDmf~L~p~~~~~dKw~W~kvkp~g~kPspRsgfsv~v 304 (521)
T KOG1230|consen 225 SGAGPTPRSGCQFSVTPQGGIVVYGGYSKQRVKKDVDKGTRHSDMFLLKPEDGREDKWVWTKVKPSGVKPSPRSGFSVAV 304 (521)
T ss_pred CCCCCCCCCcceEEecCCCcEEEEcchhHhhhhhhhhcCceeeeeeeecCCcCCCcceeEeeccCCCCCCCCCCceeEEE
Confidence 8888999999999998 899999999842 356789999999988 67999999999999999999999
Q ss_pred ECCcEEEEEcCCCC---------CCCCCeEEEEECCCCcEEEeec
Q 005043 257 YDDKNLLIFGGSSK---------SKTLNDLYSLDFETMIWTRIKI 292 (717)
Q Consensus 257 ~~~~~lyV~GG~~~---------~~~~ndv~~yd~~t~~W~~v~~ 292 (717)
..+..-|.|||... +.++|++|.||+..++|.....
T Consensus 305 a~n~kal~FGGV~D~eeeeEsl~g~F~NDLy~fdlt~nrW~~~ql 349 (521)
T KOG1230|consen 305 AKNHKALFFGGVCDLEEEEESLSGEFFNDLYFFDLTRNRWSEGQL 349 (521)
T ss_pred ecCCceEEecceecccccchhhhhhhhhhhhheecccchhhHhhh
Confidence 98866899999843 4589999999999999987654
No 26
>KOG4152 consensus Host cell transcription factor HCFC1 [Cell cycle control, cell division, chromosome partitioning; Transcription]
Probab=99.96 E-value=1.8e-28 Score=260.22 Aligned_cols=291 Identities=25% Similarity=0.411 Sum_probs=233.6
Q ss_pred CCCCCC--CCccCCCCCEEEEEcCCCCCCCCccccccccccCCCCCCCCCeEEeeecCCCCCCcceeEEEEECCEEEEEc
Q 005043 28 SPIRPP--KRNSNPNSECVAPSSNHADDRDCECTIAGPEVSNGTSGNSENWMVLSIAGDKPIPRFNHAAAVIGNKMIVVG 105 (717)
Q Consensus 28 ~p~~~~--~r~s~~~~~~i~l~GG~~~~~~~~~~~~~~~~~~~~~~~s~~W~~l~~~g~~P~~R~~haav~~~~~lyV~G 105 (717)
.|++++ -|..+..-+-|++|||.++++. ..-.+|+. .++.|...++-|+.|++-..|+.+-.+.+||+||
T Consensus 27 GPvPrpRHGHRAVaikELiviFGGGNEGii--DELHvYNT------atnqWf~PavrGDiPpgcAA~GfvcdGtrilvFG 98 (830)
T KOG4152|consen 27 GPVPRPRHGHRAVAIKELIVIFGGGNEGII--DELHVYNT------ATNQWFAPAVRGDIPPGCAAFGFVCDGTRILVFG 98 (830)
T ss_pred CCCCCccccchheeeeeeEEEecCCcccch--hhhhhhcc------ccceeecchhcCCCCCchhhcceEecCceEEEEc
Confidence 355543 3366666788999999887762 22233444 8999999999999999999999999999999999
Q ss_pred ccCCCC-CcccEEEEEcCCCceEEccccccCCCCCCCCCCCcccceEEEEECCEEEEEeccCCCC--------CCceEEE
Q 005043 106 GESGNG-LLDDVQVLNFDRFSWTAASSKLYLSPSSLPLKIPACRGHSLISWGKKVLLVGGKTDSG--------SDRVSVW 176 (717)
Q Consensus 106 G~~~~~-~~~~v~~yd~~t~~W~~l~~~~~~~~~~~~~~~p~r~~hs~v~~~~~Iyv~GG~~~~~--------~~~~~v~ 176 (717)
|...-+ +.|++|-+....-.|+.+.+... . -..++-+|.+|+...++++.|+|||..... .+++|+|
T Consensus 99 GMvEYGkYsNdLYELQasRWeWkrlkp~~p---~-nG~pPCPRlGHSFsl~gnKcYlFGGLaNdseDpknNvPrYLnDlY 174 (830)
T KOG4152|consen 99 GMVEYGKYSNDLYELQASRWEWKRLKPKTP---K-NGPPPCPRLGHSFSLVGNKCYLFGGLANDSEDPKNNVPRYLNDLY 174 (830)
T ss_pred cEeeeccccchHHHhhhhhhhHhhcCCCCC---C-CCCCCCCccCceeEEeccEeEEeccccccccCcccccchhhcceE
Confidence 986544 67888777777778899887421 1 124455778999999999999999985422 2477899
Q ss_pred EEECCCC----cEEEeeecCCCCCCceeeEEEEE------CCEEEEEccccCCCCCcCcEEEEEcCCCceEeccCCCCCC
Q 005043 177 TFDTETE----CWSVVEAKGDIPVARSGHTVVRA------SSVLILFGGEDGKRRKLNDLHMFDLKSLTWLPLHCTGTGP 246 (717)
Q Consensus 177 ~yD~~t~----~W~~l~~~g~~P~~R~~hs~~~~------~~~Lyv~GG~~~~~~~~~~v~~yD~~t~~W~~l~~~g~~P 246 (717)
++++.-+ .|...-..|..|.+|..|+++.+ ..++|||||..+- .+.|+|.+|+++..|.+....|..|
T Consensus 175 ~leL~~Gsgvv~W~ip~t~Gv~P~pRESHTAViY~eKDs~~skmvvyGGM~G~--RLgDLW~Ldl~Tl~W~kp~~~G~~P 252 (830)
T KOG4152|consen 175 ILELRPGSGVVAWDIPITYGVLPPPRESHTAVIYTEKDSKKSKMVVYGGMSGC--RLGDLWTLDLDTLTWNKPSLSGVAP 252 (830)
T ss_pred EEEeccCCceEEEecccccCCCCCCcccceeEEEEeccCCcceEEEEcccccc--cccceeEEecceeecccccccCCCC
Confidence 9988744 39988888899999999999998 2489999999875 6999999999999999999999999
Q ss_pred CCCcccEEEEECCcEEEEEcCCCC--------------CCCCCeEEEEECCCCcEEEeec----CCCCCCCCcceEEEEE
Q 005043 247 SPRSNHVAALYDDKNLLIFGGSSK--------------SKTLNDLYSLDFETMIWTRIKI----RGFHPSPRAGCCGVLC 308 (717)
Q Consensus 247 ~~R~~~aa~~~~~~~lyV~GG~~~--------------~~~~ndv~~yd~~t~~W~~v~~----~g~~P~~R~~~sav~~ 308 (717)
.||.-|+++.++++ +|||||+-. -.+.+.+-++++++..|+.+-. ....|.+|.+|+++.+
T Consensus 253 lPRSLHsa~~IGnK-MyvfGGWVPl~~~~~~~~~hekEWkCTssl~clNldt~~W~tl~~d~~ed~tiPR~RAGHCAvAi 331 (830)
T KOG4152|consen 253 LPRSLHSATTIGNK-MYVFGGWVPLVMDDVKVATHEKEWKCTSSLACLNLDTMAWETLLMDTLEDNTIPRARAGHCAVAI 331 (830)
T ss_pred CCcccccceeecce-eEEecceeeeeccccccccccceeeeccceeeeeecchheeeeeeccccccccccccccceeEEe
Confidence 99999999999999 999999831 1356778899999999998853 1126899999999999
Q ss_pred CCEEEEEecCCCC-------CccCeEEEEECC
Q 005043 309 GTKWYIAGGGSRK-------KRHAETLIFDIL 333 (717)
Q Consensus 309 ~~~IyV~GG~~~~-------~~~~dv~~yD~~ 333 (717)
+.++||..|+++. -...|+|.+|..
T Consensus 332 gtRlYiWSGRDGYrKAwnnQVCCkDlWyLdTe 363 (830)
T KOG4152|consen 332 GTRLYIWSGRDGYRKAWNNQVCCKDLWYLDTE 363 (830)
T ss_pred ccEEEEEeccchhhHhhccccchhhhhhhccc
Confidence 9999999998754 245677777754
No 27
>COG3055 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=99.74 E-value=3.4e-16 Score=162.81 Aligned_cols=275 Identities=21% Similarity=0.358 Sum_probs=195.7
Q ss_pred CCCCCcceeEEEEECCEEEEEcccCCCCCcccEEEEEcCC--CceEEccccccCCCCCCCCCCCcccceEEEEECCEEEE
Q 005043 84 DKPIPRFNHAAAVIGNKMIVVGGESGNGLLDDVQVLNFDR--FSWTAASSKLYLSPSSLPLKIPACRGHSLISWGKKVLL 161 (717)
Q Consensus 84 ~~P~~R~~haav~~~~~lyV~GG~~~~~~~~~v~~yd~~t--~~W~~l~~~~~~~~~~~~~~~p~r~~hs~v~~~~~Iyv 161 (717)
+.|.+--+.+.+.+++.+||-=|..+. ..+.+|+.. ..|+.++. +|..+|.+..+++++++||+
T Consensus 32 dlPvg~KnG~Ga~ig~~~YVGLGs~G~----afy~ldL~~~~k~W~~~a~----------FpG~~rnqa~~a~~~~kLyv 97 (381)
T COG3055 32 DLPVGFKNGAGALIGDTVYVGLGSAGT----AFYVLDLKKPGKGWTKIAD----------FPGGARNQAVAAVIGGKLYV 97 (381)
T ss_pred CCCccccccccceecceEEEEeccCCc----cceehhhhcCCCCceEccc----------CCCcccccchheeeCCeEEE
Confidence 778888888889999999998774433 578888876 48999998 77889999999999999999
Q ss_pred EeccCCCCC----CceEEEEEECCCCcEEEeeecCCCCCCceeeEEEEECC-EEEEEccccCC-----------------
Q 005043 162 VGGKTDSGS----DRVSVWTFDTETECWSVVEAKGDIPVARSGHTVVRASS-VLILFGGEDGK----------------- 219 (717)
Q Consensus 162 ~GG~~~~~~----~~~~v~~yD~~t~~W~~l~~~g~~P~~R~~hs~~~~~~-~Lyv~GG~~~~----------------- 219 (717)
|||...... ..+++|+||+.+++|.++.. ..|....+++++.+++ +||++||.+..
T Consensus 98 FgG~Gk~~~~~~~~~nd~Y~y~p~~nsW~kl~t--~sP~gl~G~~~~~~~~~~i~f~GGvn~~if~~yf~dv~~a~~d~~ 175 (381)
T COG3055 98 FGGYGKSVSSSPQVFNDAYRYDPSTNSWHKLDT--RSPTGLVGASTFSLNGTKIYFFGGVNQNIFNGYFEDVGAAGKDKE 175 (381)
T ss_pred eeccccCCCCCceEeeeeEEecCCCChhheecc--ccccccccceeEecCCceEEEEccccHHhhhhhHHhhhhhcccHH
Confidence 999865333 36799999999999999986 4577788888888887 99999998521
Q ss_pred ----------------CCCcCcEEEEEcCCCceEeccCCCCCC-CCCcccEEEEECCcEEEEEcCC-CCCCCCCeEEEEE
Q 005043 220 ----------------RRKLNDLHMFDLKSLTWLPLHCTGTGP-SPRSNHVAALYDDKNLLIFGGS-SKSKTLNDLYSLD 281 (717)
Q Consensus 220 ----------------~~~~~~v~~yD~~t~~W~~l~~~g~~P-~~R~~~aa~~~~~~~lyV~GG~-~~~~~~ndv~~yd 281 (717)
......++.|||.++.|+.+. ..| .++++ +++++.+..+.++-|. ........+++++
T Consensus 176 ~~~~i~~~yf~~~~~dy~~n~ev~sy~p~~n~W~~~G---~~pf~~~aG-sa~~~~~n~~~lInGEiKpGLRt~~~k~~~ 251 (381)
T COG3055 176 AVDKIIAHYFDKKAEDYFFNKEVLSYDPSTNQWRNLG---ENPFYGNAG-SAVVIKGNKLTLINGEIKPGLRTAEVKQAD 251 (381)
T ss_pred HHHHHHHHHhCCCHHHhcccccccccccccchhhhcC---cCcccCccC-cceeecCCeEEEEcceecCCccccceeEEE
Confidence 123567999999999999885 444 35555 4445544436666665 3344455677777
Q ss_pred C--CCCcEEEeecCCCCCCCC-cceEEE---EECCEEEEEecCCC-------------------CCccCeEEEEECCCCc
Q 005043 282 F--ETMIWTRIKIRGFHPSPR-AGCCGV---LCGTKWYIAGGGSR-------------------KKRHAETLIFDILKGE 336 (717)
Q Consensus 282 ~--~t~~W~~v~~~g~~P~~R-~~~sav---~~~~~IyV~GG~~~-------------------~~~~~dv~~yD~~t~~ 336 (717)
+ ..-+|..++..+.++..- .+.+.+ ..++.++|.||..- .....+||.|| .+.
T Consensus 252 ~~~~~~~w~~l~~lp~~~~~~~eGvAGaf~G~s~~~~lv~GGAnF~Ga~~~y~~Gk~~AH~Gl~K~w~~~Vy~~d--~g~ 329 (381)
T COG3055 252 FGGDNLKWLKLSDLPAPIGSNKEGVAGAFSGKSNGEVLVAGGANFPGALKAYKNGKFYAHEGLSKSWNSEVYIFD--NGS 329 (381)
T ss_pred eccCceeeeeccCCCCCCCCCccccceeccceeCCeEEEecCCCChhHHHHHHhcccccccchhhhhhceEEEEc--CCc
Confidence 6 466799997753322111 222222 34788999998531 12457899998 899
Q ss_pred EEEeecCCCCCCCCCcceEEEEEEeCCCcEEEEEcCCCCCC--CCeEEEEEccC
Q 005043 337 WSVAITSPSSSVTSNKGFTLVLVQHKEKDFLVAFGGIKKEP--SNQVEVLSIEK 388 (717)
Q Consensus 337 W~~l~~~p~~~~~~r~g~s~v~v~~~~~~~I~v~GG~~~~~--~n~v~vyd~~~ 388 (717)
|+.+...|. + .++++.+.. .+.+|++||..... ...|..+.++.
T Consensus 330 Wk~~GeLp~----~-l~YG~s~~~---nn~vl~IGGE~~~Gka~~~v~~l~~~g 375 (381)
T COG3055 330 WKIVGELPQ----G-LAYGVSLSY---NNKVLLIGGETSGGKATTRVYSLSWDG 375 (381)
T ss_pred eeeecccCC----C-ccceEEEec---CCcEEEEccccCCCeeeeeEEEEEEcC
Confidence 999875443 2 334444443 67899999986443 55666555443
No 28
>COG3055 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=99.70 E-value=1.9e-15 Score=157.27 Aligned_cols=263 Identities=21% Similarity=0.289 Sum_probs=184.7
Q ss_pred ccCCCCCEEEEEcCCCCCCCCccccccccccCCCCCCCCCeEEeeecCCCC-CCcceeEEEEECCEEEEEcccCCC----
Q 005043 36 NSNPNSECVAPSSNHADDRDCECTIAGPEVSNGTSGNSENWMVLSIAGDKP-IPRFNHAAAVIGNKMIVVGGESGN---- 110 (717)
Q Consensus 36 ~s~~~~~~i~l~GG~~~~~~~~~~~~~~~~~~~~~~~s~~W~~l~~~g~~P-~~R~~haav~~~~~lyV~GG~~~~---- 110 (717)
+....++.+|+.=|..-.. . |.+++. .....|+.++ ..| .+|.+..+++++++||+|||....
T Consensus 41 ~Ga~ig~~~YVGLGs~G~a--f-----y~ldL~--~~~k~W~~~a---~FpG~~rnqa~~a~~~~kLyvFgG~Gk~~~~~ 108 (381)
T COG3055 41 AGALIGDTVYVGLGSAGTA--F-----YVLDLK--KPGKGWTKIA---DFPGGARNQAVAAVIGGKLYVFGGYGKSVSSS 108 (381)
T ss_pred ccceecceEEEEeccCCcc--c-----eehhhh--cCCCCceEcc---cCCCcccccchheeeCCeEEEeeccccCCCCC
Confidence 5555567888877722221 1 333221 1468899998 666 689999999999999999997433
Q ss_pred -CCcccEEEEEcCCCceEEccccccCCCCCCCCCCCcccceEEEEECC-EEEEEeccCCCC-------------------
Q 005043 111 -GLLDDVQVLNFDRFSWTAASSKLYLSPSSLPLKIPACRGHSLISWGK-KVLLVGGKTDSG------------------- 169 (717)
Q Consensus 111 -~~~~~v~~yd~~t~~W~~l~~~~~~~~~~~~~~~p~r~~hs~v~~~~-~Iyv~GG~~~~~------------------- 169 (717)
..++++|+|||.+++|..+... .+....+++++.+++ .||++||.+..-
T Consensus 109 ~~~~nd~Y~y~p~~nsW~kl~t~----------sP~gl~G~~~~~~~~~~i~f~GGvn~~if~~yf~dv~~a~~d~~~~~ 178 (381)
T COG3055 109 PQVFNDAYRYDPSTNSWHKLDTR----------SPTGLVGASTFSLNGTKIYFFGGVNQNIFNGYFEDVGAAGKDKEAVD 178 (381)
T ss_pred ceEeeeeEEecCCCChhheeccc----------cccccccceeEecCCceEEEEccccHHhhhhhHHhhhhhcccHHHHH
Confidence 3478999999999999999873 233456888888877 999999975210
Q ss_pred --------------CCceEEEEEECCCCcEEEeeecCCCCCCceeeEEEEECCEEEEEccccCCCCCcCcEEEEEcC--C
Q 005043 170 --------------SDRVSVWTFDTETECWSVVEAKGDIPVARSGHTVVRASSVLILFGGEDGKRRKLNDLHMFDLK--S 233 (717)
Q Consensus 170 --------------~~~~~v~~yD~~t~~W~~l~~~g~~P~~R~~hs~~~~~~~Lyv~GG~~~~~~~~~~v~~yD~~--t 233 (717)
.....|+.|+|.++.|+.+-. ..-.++++++.+.-++++.++-|.-..+-....+++++.. .
T Consensus 179 ~i~~~yf~~~~~dy~~n~ev~sy~p~~n~W~~~G~--~pf~~~aGsa~~~~~n~~~lInGEiKpGLRt~~~k~~~~~~~~ 256 (381)
T COG3055 179 KIIAHYFDKKAEDYFFNKEVLSYDPSTNQWRNLGE--NPFYGNAGSAVVIKGNKLTLINGEIKPGLRTAEVKQADFGGDN 256 (381)
T ss_pred HHHHHHhCCCHHHhcccccccccccccchhhhcCc--CcccCccCcceeecCCeEEEEcceecCCccccceeEEEeccCc
Confidence 012259999999999998763 1233566655555567899999987776667778888776 4
Q ss_pred CceEeccCCCCCCCCCc-------ccEEEEECCcEEEEEcCCCC-------------------CCCCCeEEEEECCCCcE
Q 005043 234 LTWLPLHCTGTGPSPRS-------NHVAALYDDKNLLIFGGSSK-------------------SKTLNDLYSLDFETMIW 287 (717)
Q Consensus 234 ~~W~~l~~~g~~P~~R~-------~~aa~~~~~~~lyV~GG~~~-------------------~~~~ndv~~yd~~t~~W 287 (717)
.+|..+. ++|.+.. ++-.-..++. ++|.||.+- ..+.++||.|| ++.|
T Consensus 257 ~~w~~l~---~lp~~~~~~~eGvAGaf~G~s~~~-~lv~GGAnF~Ga~~~y~~Gk~~AH~Gl~K~w~~~Vy~~d--~g~W 330 (381)
T COG3055 257 LKWLKLS---DLPAPIGSNKEGVAGAFSGKSNGE-VLVAGGANFPGALKAYKNGKFYAHEGLSKSWNSEVYIFD--NGSW 330 (381)
T ss_pred eeeeecc---CCCCCCCCCccccceeccceeCCe-EEEecCCCChhHHHHHHhcccccccchhhhhhceEEEEc--CCce
Confidence 5799986 4443322 2222233445 788888631 13467899999 9999
Q ss_pred EEeecCCCCCCCCcceEEEEECCEEEEEecCCCC-CccCeEEEEE
Q 005043 288 TRIKIRGFHPSPRAGCCGVLCGTKWYIAGGGSRK-KRHAETLIFD 331 (717)
Q Consensus 288 ~~v~~~g~~P~~R~~~sav~~~~~IyV~GG~~~~-~~~~dv~~yD 331 (717)
+.+.. +|.++++..++..++.+|++||-+.. .....++.+-
T Consensus 331 k~~Ge---Lp~~l~YG~s~~~nn~vl~IGGE~~~Gka~~~v~~l~ 372 (381)
T COG3055 331 KIVGE---LPQGLAYGVSLSYNNKVLLIGGETSGGKATTRVYSLS 372 (381)
T ss_pred eeecc---cCCCccceEEEecCCcEEEEccccCCCeeeeeEEEEE
Confidence 99954 58888888888899999999997644 4445555443
No 29
>KOG2437 consensus Muskelin [Signal transduction mechanisms]
Probab=99.60 E-value=9e-16 Score=164.11 Aligned_cols=269 Identities=22% Similarity=0.332 Sum_probs=190.5
Q ss_pred CCceEEccccccCCCCCCCCCCCcccceEEEEECC--EEEEEeccCCCCCCceEEEEEECCCCcEEEeeecCCCCCCcee
Q 005043 123 RFSWTAASSKLYLSPSSLPLKIPACRGHSLISWGK--KVLLVGGKTDSGSDRVSVWTFDTETECWSVVEAKGDIPVARSG 200 (717)
Q Consensus 123 t~~W~~l~~~~~~~~~~~~~~~p~r~~hs~v~~~~--~Iyv~GG~~~~~~~~~~v~~yD~~t~~W~~l~~~g~~P~~R~~ 200 (717)
+-.|.++++....... .-.-+..|.+|.++...+ .||++||++ +...+.++|.|+...+.|+.+...+..|..|++
T Consensus 238 ~~~W~~i~~~~~~~~~-~~~~p~~RgGHQMV~~~~~~CiYLYGGWd-G~~~l~DFW~Y~v~e~~W~~iN~~t~~PG~RsC 315 (723)
T KOG2437|consen 238 KPRWSQIIPKSTKGDG-EDNRPGMRGGHQMVIDVQTECVYLYGGWD-GTQDLADFWAYSVKENQWTCINRDTEGPGARSC 315 (723)
T ss_pred cccccccCchhhcccc-cccCccccCcceEEEeCCCcEEEEecCcc-cchhHHHHHhhcCCcceeEEeecCCCCCcchhh
Confidence 4579998875321111 112244678999999865 999999995 456688999999999999999877778999999
Q ss_pred eEEEEECC--EEEEEccccCCC-----CCcCcEEEEEcCCCceEeccCC---CCCCCCCcccEEEEECCc-EEEEEcCCC
Q 005043 201 HTVVRASS--VLILFGGEDGKR-----RKLNDLHMFDLKSLTWLPLHCT---GTGPSPRSNHVAALYDDK-NLLIFGGSS 269 (717)
Q Consensus 201 hs~~~~~~--~Lyv~GG~~~~~-----~~~~~v~~yD~~t~~W~~l~~~---g~~P~~R~~~aa~~~~~~-~lyV~GG~~ 269 (717)
|.|+..-. +||+.|-+-+.. ..-.|+|+||..++.|..+... ...|...+.|.+++.+++ ++|||||..
T Consensus 316 HRMVid~S~~KLYLlG~Y~~sS~r~~~s~RsDfW~FDi~~~~W~~ls~dt~~dGGP~~vfDHqM~Vd~~k~~iyVfGGr~ 395 (723)
T KOG2437|consen 316 HRMVIDISRRKLYLLGRYLDSSVRNSKSLRSDFWRFDIDTNTWMLLSEDTAADGGPKLVFDHQMCVDSEKHMIYVFGGRI 395 (723)
T ss_pred hhhhhhhhHhHHhhhhhccccccccccccccceEEEecCCceeEEecccccccCCcceeecceeeEecCcceEEEecCee
Confidence 99998754 999999885431 2357899999999999988532 246888999999998776 799999985
Q ss_pred C---CCCCCeEEEEECCCCcEEEeecCCC-------CCCCCcceEEEEE--CCEEEEEecCCCCCccCeEEEEECCCCcE
Q 005043 270 K---SKTLNDLYSLDFETMIWTRIKIRGF-------HPSPRAGCCGVLC--GTKWYIAGGGSRKKRHAETLIFDILKGEW 337 (717)
Q Consensus 270 ~---~~~~ndv~~yd~~t~~W~~v~~~g~-------~P~~R~~~sav~~--~~~IyV~GG~~~~~~~~dv~~yD~~t~~W 337 (717)
. ......+|.||.....|..+...-. ....|.+|++-.+ ++++|++||......++=.+.||+....=
T Consensus 396 ~~~~e~~f~GLYaf~~~~~~w~~l~e~~~~~~~vvE~~~sR~ghcmE~~~~n~~ly~fggq~s~~El~L~f~y~I~~E~~ 475 (723)
T KOG2437|consen 396 LTCNEPQFSGLYAFNCQCQTWKLLREDSCNAGPVVEDIQSRIGHCMEFHSKNRCLYVFGGQRSKTELNLFFSYDIDSEHV 475 (723)
T ss_pred ccCCCccccceEEEecCCccHHHHHHHHhhcCcchhHHHHHHHHHHHhcCCCCeEEeccCcccceEEeehhcceeccccc
Confidence 3 3456789999999999997754110 1235778877554 68999999987765555556776654322
Q ss_pred EEeecC--CCCCCCCCcceEEEEEEeCCCcEEEEEcCCCC-------CCCCeEEEEEccCCcccC
Q 005043 338 SVAITS--PSSSVTSNKGFTLVLVQHKEKDFLVAFGGIKK-------EPSNQVEVLSIEKNESSM 393 (717)
Q Consensus 338 ~~l~~~--p~~~~~~r~g~s~v~v~~~~~~~I~v~GG~~~-------~~~n~v~vyd~~~~eW~~ 393 (717)
..+... ...+..+..++..-.+.++....|.+.-|... ...|.+|+|++.+++|.-
T Consensus 476 ~~~s~~~k~dsS~~pS~~f~qRs~~dp~~~~i~~~~G~~~~~~~~e~~~rns~wi~~i~~~~w~c 540 (723)
T KOG2437|consen 476 DIISDGTKKDSSMVPSTGFTQRATIDPELNEIHVLSGLSKDKEKREENVRNSFWIYDIVRNSWSC 540 (723)
T ss_pred hhhhccCcCccccCCCcchhhhcccCCCCcchhhhcccchhccCccccccCcEEEEEecccchhh
Confidence 222110 11112233444444555555667777777531 237889999999999953
No 30
>KOG2437 consensus Muskelin [Signal transduction mechanisms]
Probab=99.53 E-value=7.2e-15 Score=157.26 Aligned_cols=263 Identities=21% Similarity=0.308 Sum_probs=186.9
Q ss_pred CCCCCeEEeeecC-------CCCCCcceeEEEEECC--EEEEEcccCCCCCcccEEEEEcCCCceEEccccccCCCCCCC
Q 005043 71 GNSENWMVLSIAG-------DKPIPRFNHAAAVIGN--KMIVVGGESGNGLLDDVQVLNFDRFSWTAASSKLYLSPSSLP 141 (717)
Q Consensus 71 ~~s~~W~~l~~~g-------~~P~~R~~haav~~~~--~lyV~GG~~~~~~~~~v~~yd~~t~~W~~l~~~~~~~~~~~~ 141 (717)
+-..+|.+++... .-|..|.+|.++...+ .||++||+++...+.|+|.|+...+.|..+....
T Consensus 236 ey~~~W~~i~~~~~~~~~~~~~p~~RgGHQMV~~~~~~CiYLYGGWdG~~~l~DFW~Y~v~e~~W~~iN~~t-------- 307 (723)
T KOG2437|consen 236 EYKPRWSQIIPKSTKGDGEDNRPGMRGGHQMVIDVQTECVYLYGGWDGTQDLADFWAYSVKENQWTCINRDT-------- 307 (723)
T ss_pred cccccccccCchhhcccccccCccccCcceEEEeCCCcEEEEecCcccchhHHHHHhhcCCcceeEEeecCC--------
Confidence 4567898887544 5678899999998864 8999999999999999999999999999987631
Q ss_pred CCCCcccceEEEEECC--EEEEEeccCCCCC-----CceEEEEEECCCCcEEEeeec---CCCCCCceeeEEEEECCE--
Q 005043 142 LKIPACRGHSLISWGK--KVLLVGGKTDSGS-----DRVSVWTFDTETECWSVVEAK---GDIPVARSGHTVVRASSV-- 209 (717)
Q Consensus 142 ~~~p~r~~hs~v~~~~--~Iyv~GG~~~~~~-----~~~~v~~yD~~t~~W~~l~~~---g~~P~~R~~hs~~~~~~~-- 209 (717)
-.+..|..|.++.... ++|++|-+.+... ...++|+||..++.|..+... ..-|...+.|.|++.+.+
T Consensus 308 ~~PG~RsCHRMVid~S~~KLYLlG~Y~~sS~r~~~s~RsDfW~FDi~~~~W~~ls~dt~~dGGP~~vfDHqM~Vd~~k~~ 387 (723)
T KOG2437|consen 308 EGPGARSCHRMVIDISRRKLYLLGRYLDSSVRNSKSLRSDFWRFDIDTNTWMLLSEDTAADGGPKLVFDHQMCVDSEKHM 387 (723)
T ss_pred CCCcchhhhhhhhhhhHhHHhhhhhccccccccccccccceEEEecCCceeEEecccccccCCcceeecceeeEecCcce
Confidence 1245778899998865 9999998865332 255899999999999988642 235888999999999876
Q ss_pred EEEEccccCC--CCCcCcEEEEEcCCCceEeccCC----C---CCCCCCcccEEEEECC-cEEEEEcCCCCCCCCCeEEE
Q 005043 210 LILFGGEDGK--RRKLNDLHMFDLKSLTWLPLHCT----G---TGPSPRSNHVAALYDD-KNLLIFGGSSKSKTLNDLYS 279 (717)
Q Consensus 210 Lyv~GG~~~~--~~~~~~v~~yD~~t~~W~~l~~~----g---~~P~~R~~~aa~~~~~-~~lyV~GG~~~~~~~ndv~~ 279 (717)
||||||+... ......+|.||.....|..+... + ..-..|.+|++-.+.+ ..+|+|||.....-++-.+.
T Consensus 388 iyVfGGr~~~~~e~~f~GLYaf~~~~~~w~~l~e~~~~~~~vvE~~~sR~ghcmE~~~~n~~ly~fggq~s~~El~L~f~ 467 (723)
T KOG2437|consen 388 IYVFGGRILTCNEPQFSGLYAFNCQCQTWKLLREDSCNAGPVVEDIQSRIGHCMEFHSKNRCLYVFGGQRSKTELNLFFS 467 (723)
T ss_pred EEEecCeeccCCCccccceEEEecCCccHHHHHHHHhhcCcchhHHHHHHHHHHHhcCCCCeEEeccCcccceEEeehhc
Confidence 9999998543 23567899999999999866421 1 1123577777766543 36999999887666666777
Q ss_pred EECCCCcEEEeec-----CCCCCCCCcceEEEEE---CCEEEEEecCCCC------CccCeEEEEECCCCcEEEeec
Q 005043 280 LDFETMIWTRIKI-----RGFHPSPRAGCCGVLC---GTKWYIAGGGSRK------KRHAETLIFDILKGEWSVAIT 342 (717)
Q Consensus 280 yd~~t~~W~~v~~-----~g~~P~~R~~~sav~~---~~~IyV~GG~~~~------~~~~dv~~yD~~t~~W~~l~~ 342 (717)
||+....=..+.. ....|++ ..+.-+.. ...|.+.-|.+.. ...+..|+|++.++.|..+..
T Consensus 468 y~I~~E~~~~~s~~~k~dsS~~pS~-~f~qRs~~dp~~~~i~~~~G~~~~~~~~e~~~rns~wi~~i~~~~w~cI~~ 543 (723)
T KOG2437|consen 468 YDIDSEHVDIISDGTKKDSSMVPST-GFTQRATIDPELNEIHVLSGLSKDKEKREENVRNSFWIYDIVRNSWSCIYK 543 (723)
T ss_pred ceeccccchhhhccCcCccccCCCc-chhhhcccCCCCcchhhhcccchhccCccccccCcEEEEEecccchhhHhh
Confidence 7664433222211 0011221 11111222 4667777776522 245778999999999988753
No 31
>PF13964 Kelch_6: Kelch motif
Probab=98.95 E-value=1.6e-09 Score=83.75 Aligned_cols=50 Identities=34% Similarity=0.619 Sum_probs=46.1
Q ss_pred CceeeEEEEECCEEEEEccccCCCCCcCcEEEEEcCCCceEeccCCCCCCCCC
Q 005043 197 ARSGHTVVRASSVLILFGGEDGKRRKLNDLHMFDLKSLTWLPLHCTGTGPSPR 249 (717)
Q Consensus 197 ~R~~hs~~~~~~~Lyv~GG~~~~~~~~~~v~~yD~~t~~W~~l~~~g~~P~~R 249 (717)
+|.+|++++++++|||+||.......++++++||+.+++|+.++ +||.||
T Consensus 1 pR~~~s~v~~~~~iyv~GG~~~~~~~~~~v~~yd~~t~~W~~~~---~mp~pR 50 (50)
T PF13964_consen 1 PRYGHSAVVVGGKIYVFGGYDNSGKYSNDVERYDPETNTWEQLP---PMPTPR 50 (50)
T ss_pred CCccCEEEEECCEEEEECCCCCCCCccccEEEEcCCCCcEEECC---CCCCCC
Confidence 58999999999999999999885578999999999999999997 899887
No 32
>PF03089 RAG2: Recombination activating protein 2; InterPro: IPR004321 The variable portion of the genes encoding immunoglobulins and T cell receptors are assembled from component V, D, and J DNA segments by a site-specific recombination reaction termed V(D)J recombination. V(D)J recombination is targeted to specific sites on the chromosome by recombination signal sequences (RSSs) that flank antigen receptor gene segments. The RSS consists of a conserved heptamer (consensus, 5'-CACAGTG-3') and nonamer (consensus, 5'-ACAAAAACC-3') separated by a spacer of either 12 or 23 bp. Efficient recombination occurs between a 12-RSS and a 23-RSS, a restriction known as the 12/23 rule. V(D)J recombination can be divided into two phases, DNA cleavage and DNA joining. DNA cleavage requires two lymphocyte-specific factors, the products of the recombination activating genes, RAG1 and RAG2, which together recognise the RSSs and create double strand breaks at the RSS-coding segment junctions []. RAG-mediated DNA cleavage occurs in a synaptic complex termed the paired complex, which is constituted from two distinct RSS-RAG complexes, a 12-SC and a 23-SC (where SC stands for signal complex). The DNA cleavage reaction involves two distinct enzymatic steps, initial nicking that creates a 3'-OH between a coding segment and its RSS, followed by hairpin formation in which the newly created 3'-OH attacks a phosphodiester bond on the opposite DNA strand. This generates a blunt, 5' phosphorylated signal end containing all of the RSS elements, and a covalently sealed hairpin coding end. The second phase of V(D)J recombination, in which broken DNA fragments are processed and joined, is less well characterised. Signal ends are typically joined precisely to form a signal joint, whereas joining of the coding ends requires the hairpin structure to be opened and typically involves nucleotide addition and deletion before formation of the coding joint. The factors involved in these processes include ubiquitously expressed proteins involved in the repair of DNA double strand breaks by nonhomologous end joining, terminal deoxynucleotidyl transferase, and Artemis protein. In addition to their critical roles in RSS recognition and DNA cleavage, the RAG proteins may perform two distinct types of functions in the postcleavage phase of V(D)J. A structural function has been inferred from the finding that, after DNA cleavage in vitro, the DNA ends remain associated with the RAG proteins in a "four end" complex known as the cleaved signal complex. After release of the coding ends in vitro, and after coding joint formation in vivo, the RAG proteins remain in a stable signal end complex (SEC) containing the two signal ends. These postcleavage complexes may serve as essential scaffolds for the second phase of the reaction, with the RAG proteins acting to organise the DNA processing and joining events. The second type of RAG protein-mediated postcleavage activity is the catalysis of phosphodiester bond hydrolysis and strand transfer reactions. The RAG proteins are capable of opening hairpin coding ends in vitro. The RAG proteins also show 3' flap endonuclease activity that may contribute to coding end processing/joining and can utilise the 3' OH group on the signal ends to attack hairpin coding ends (forming hybrid or open/shut joints) or virtually any DNA duplex (forming a transposition product).; GO: 0003677 DNA binding, 0006310 DNA recombination, 0005634 nucleus
Probab=98.87 E-value=7.4e-08 Score=98.09 Aligned_cols=178 Identities=15% Similarity=0.195 Sum_probs=115.9
Q ss_pred CCCCceeeEEEEEC------CEEEEEccccCCCCCcCcEEEEEcCCCc--------eEeccCCCCCCCCCcccEEEEEC-
Q 005043 194 IPVARSGHTVVRAS------SVLILFGGEDGKRRKLNDLHMFDLKSLT--------WLPLHCTGTGPSPRSNHVAALYD- 258 (717)
Q Consensus 194 ~P~~R~~hs~~~~~------~~Lyv~GG~~~~~~~~~~v~~yD~~t~~--------W~~l~~~g~~P~~R~~~aa~~~~- 258 (717)
+|+-|+-..+...+ ...+|.||++.++.....+|+....+.. ..+-...|+.|.+||+|++.++.
T Consensus 19 LPPLR~PAv~~~~~~~~~~~~~YlIHGGrTPNNElS~~LY~ls~~s~~cNkK~tl~C~EKeLvGdvP~aRYGHt~~vV~S 98 (337)
T PF03089_consen 19 LPPLRCPAVCHLSDPSDGEPEQYLIHGGRTPNNELSSSLYILSVDSRGCNKKVTLCCQEKELVGDVPEARYGHTINVVHS 98 (337)
T ss_pred CCCCCCccEeeecCCCCCCeeeEEecCCcCCCcccccceEEEEeecCCCCceeEEEEecceecCCCCcccccceEEEEEE
Confidence 66666654443312 1567779999988888999998776543 33334468999999999987763
Q ss_pred -Cc-EEEEEcCCCCC--------------CCCCeEEEEECCCCcEEEeecCCCCCCCCcceEEEEECCEEEEEecCCCC-
Q 005043 259 -DK-NLLIFGGSSKS--------------KTLNDLYSLDFETMIWTRIKIRGFHPSPRAGCCGVLCGTKWYIAGGGSRK- 321 (717)
Q Consensus 259 -~~-~lyV~GG~~~~--------------~~~ndv~~yd~~t~~W~~v~~~g~~P~~R~~~sav~~~~~IyV~GG~~~~- 321 (717)
++ ..++|||.+.- .....|+.+|++-+..+.-.. +.+-.+..+|.+..-++.+||+||..-.
T Consensus 99 rGKta~VlFGGRSY~P~~qRTTenWNsVvDC~P~VfLiDleFGC~tah~l-pEl~dG~SFHvslar~D~VYilGGHsl~s 177 (337)
T PF03089_consen 99 RGKTACVLFGGRSYMPPGQRTTENWNSVVDCPPQVFLIDLEFGCCTAHTL-PELQDGQSFHVSLARNDCVYILGGHSLES 177 (337)
T ss_pred CCcEEEEEECCcccCCccccchhhcceeccCCCeEEEEeccccccccccc-hhhcCCeEEEEEEecCceEEEEccEEccC
Confidence 44 67899998521 134568999998888776543 3456678888888889999999998643
Q ss_pred -CccCeEEEEECCC---CcEEEeecCCCCCCCCCcceEEEEEEeCCCcEEEEEcCCCCCC
Q 005043 322 -KRHAETLIFDILK---GEWSVAITSPSSSVTSNKGFTLVLVQHKEKDFLVAFGGIKKEP 377 (717)
Q Consensus 322 -~~~~dv~~yD~~t---~~W~~l~~~p~~~~~~r~g~s~v~v~~~~~~~I~v~GG~~~~~ 377 (717)
.+-..++.+..+- .-+-... ........+.+++...+.+..+|+|||..+.
T Consensus 178 d~Rpp~l~rlkVdLllGSP~vsC~-----vl~~glSisSAIvt~~~~~e~iIlGGY~sds 232 (337)
T PF03089_consen 178 DSRPPRLYRLKVDLLLGSPAVSCT-----VLQGGLSISSAIVTQTGPHEYIILGGYQSDS 232 (337)
T ss_pred CCCCCcEEEEEEeecCCCceeEEE-----ECCCCceEeeeeEeecCCCceEEEecccccc
Confidence 3334455443221 0011111 0123334555555555668889999997654
No 33
>PF13964 Kelch_6: Kelch motif
Probab=98.85 E-value=6.5e-09 Score=80.40 Aligned_cols=45 Identities=29% Similarity=0.589 Sum_probs=42.1
Q ss_pred CcceeEEEEECCEEEEEcccCC-CCCcccEEEEEcCCCceEEcccc
Q 005043 88 PRFNHAAAVIGNKMIVVGGESG-NGLLDDVQVLNFDRFSWTAASSK 132 (717)
Q Consensus 88 ~R~~haav~~~~~lyV~GG~~~-~~~~~~v~~yd~~t~~W~~l~~~ 132 (717)
||.+|++++++++|||+||..+ ...++++++||+.+++|+.+++|
T Consensus 1 pR~~~s~v~~~~~iyv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~m 46 (50)
T PF13964_consen 1 PRYGHSAVVVGGKIYVFGGYDNSGKYSNDVERYDPETNTWEQLPPM 46 (50)
T ss_pred CCccCEEEEECCEEEEECCCCCCCCccccEEEEcCCCCcEEECCCC
Confidence 6999999999999999999988 67899999999999999999984
No 34
>PLN02772 guanylate kinase
Probab=98.82 E-value=2.2e-08 Score=108.80 Aligned_cols=90 Identities=18% Similarity=0.299 Sum_probs=79.1
Q ss_pred CCCCceeeEEEEECCEEEEEccccCCCCCcCcEEEEEcCCCceEeccCCCCCCCCCcccEEEEECCcEEEEEcCCCCCCC
Q 005043 194 IPVARSGHTVVRASSVLILFGGEDGKRRKLNDLHMFDLKSLTWLPLHCTGTGPSPRSNHVAALYDDKNLLIFGGSSKSKT 273 (717)
Q Consensus 194 ~P~~R~~hs~~~~~~~Lyv~GG~~~~~~~~~~v~~yD~~t~~W~~l~~~g~~P~~R~~~aa~~~~~~~lyV~GG~~~~~~ 273 (717)
-+.++.+|+++.+++++||+||.++.+..++.+++||..+.+|......|..|.||.+|+++++++..|+|+++.+..
T Consensus 21 ~~~~~~~~tav~igdk~yv~GG~~d~~~~~~~v~i~D~~t~~W~~P~V~G~~P~~r~GhSa~v~~~~rilv~~~~~~~-- 98 (398)
T PLN02772 21 GVKPKNRETSVTIGDKTYVIGGNHEGNTLSIGVQILDKITNNWVSPIVLGTGPKPCKGYSAVVLNKDRILVIKKGSAP-- 98 (398)
T ss_pred cCCCCCcceeEEECCEEEEEcccCCCccccceEEEEECCCCcEecccccCCCCCCCCcceEEEECCceEEEEeCCCCC--
Confidence 356889999999999999999988865578999999999999999999999999999999999987779999987554
Q ss_pred CCeEEEEECCCC
Q 005043 274 LNDLYSLDFETM 285 (717)
Q Consensus 274 ~ndv~~yd~~t~ 285 (717)
-+++|.+..+|.
T Consensus 99 ~~~~w~l~~~t~ 110 (398)
T PLN02772 99 DDSIWFLEVDTP 110 (398)
T ss_pred ccceEEEEcCCH
Confidence 367898887763
No 35
>PF13415 Kelch_3: Galactose oxidase, central domain
Probab=98.68 E-value=3.7e-08 Score=75.84 Aligned_cols=48 Identities=40% Similarity=0.706 Sum_probs=42.7
Q ss_pred CCEEEEEcccc-CCCCCcCcEEEEEcCCCceEeccCCCCCCCCCcccEEEEE
Q 005043 207 SSVLILFGGED-GKRRKLNDLHMFDLKSLTWLPLHCTGTGPSPRSNHVAALY 257 (717)
Q Consensus 207 ~~~Lyv~GG~~-~~~~~~~~v~~yD~~t~~W~~l~~~g~~P~~R~~~aa~~~ 257 (717)
+++||||||.+ .....++++|+||+.+++|+++. ++|.+|.+|+++++
T Consensus 1 g~~~~vfGG~~~~~~~~~nd~~~~~~~~~~W~~~~---~~P~~R~~h~~~~i 49 (49)
T PF13415_consen 1 GNKLYVFGGYDDDGGTRLNDVWVFDLDTNTWTRIG---DLPPPRSGHTATVI 49 (49)
T ss_pred CCEEEEECCcCCCCCCEecCEEEEECCCCEEEECC---CCCCCccceEEEEC
Confidence 57899999998 45578999999999999999994 89999999999864
No 36
>PF01344 Kelch_1: Kelch motif; InterPro: IPR006652 Kelch is a 50-residue motif, named after the Drosophila mutant in which it was first identified []. This sequence motif represents one beta-sheet blade, and several of these repeats can associate to form a beta-propeller. For instance, the motif appears 6 times in Drosophila egg-chamber regulatory protein, creating a 6-bladed beta-propeller. The motif is also found in mouse protein MIPP [] and in a number of poxviruses. In addition, kelch repeats have been recognised in alpha- and beta-scruin [, ], and in galactose oxidase from the fungus Dactylium dendroides [, ]. The structure of galactose oxidase reveals that the repeated sequence corresponds to a 4-stranded anti-parallel beta-sheet motif that forms the repeat unit in a super-barrel structural fold []. The known functions of kelch-containing proteins are diverse: scruin is an actin cross-linking protein; galactose oxidase catalyses the oxidation of the hydroxyl group at the C6 position in D-galactose; neuraminidase hydrolyses sialic acid residues from glycoproteins; and kelch may have a cytoskeletal function, as it is localised to the actin-rich ring canals that connect the 15 nurse cells to the developing oocyte in Drosophila []. Nevertheless, based on the location of the kelch pattern in the catalytic unit in galactose oxidase, functionally important residues have been predicted in glyoxal oxidase []. This entry represents a type of kelch sequence motif that comprises one beta-sheet blade.; GO: 0005515 protein binding; PDB: 2XN4_A 2WOZ_A 3II7_A 4ASC_A 1U6D_X 1ZGK_A 2FLU_X 2VPJ_A 2DYH_A 1X2R_A ....
Probab=98.64 E-value=3.9e-08 Score=74.81 Aligned_cols=45 Identities=38% Similarity=0.658 Sum_probs=41.5
Q ss_pred CcceeEEEEECCEEEEEcccCC-CCCcccEEEEEcCCCceEEcccc
Q 005043 88 PRFNHAAAVIGNKMIVVGGESG-NGLLDDVQVLNFDRFSWTAASSK 132 (717)
Q Consensus 88 ~R~~haav~~~~~lyV~GG~~~-~~~~~~v~~yd~~t~~W~~l~~~ 132 (717)
||.+|++++++++|||+||.+. ...++++++||+.+++|..+++|
T Consensus 1 pR~~~~~~~~~~~iyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~m 46 (47)
T PF01344_consen 1 PRSGHAAVVVGNKIYVIGGYDGNNQPTNSVEVYDPETNTWEELPPM 46 (47)
T ss_dssp -BBSEEEEEETTEEEEEEEBESTSSBEEEEEEEETTTTEEEEEEEE
T ss_pred CCccCEEEEECCEEEEEeeecccCceeeeEEEEeCCCCEEEEcCCC
Confidence 6999999999999999999988 67899999999999999999885
No 37
>PF01344 Kelch_1: Kelch motif; InterPro: IPR006652 Kelch is a 50-residue motif, named after the Drosophila mutant in which it was first identified []. This sequence motif represents one beta-sheet blade, and several of these repeats can associate to form a beta-propeller. For instance, the motif appears 6 times in Drosophila egg-chamber regulatory protein, creating a 6-bladed beta-propeller. The motif is also found in mouse protein MIPP [] and in a number of poxviruses. In addition, kelch repeats have been recognised in alpha- and beta-scruin [, ], and in galactose oxidase from the fungus Dactylium dendroides [, ]. The structure of galactose oxidase reveals that the repeated sequence corresponds to a 4-stranded anti-parallel beta-sheet motif that forms the repeat unit in a super-barrel structural fold []. The known functions of kelch-containing proteins are diverse: scruin is an actin cross-linking protein; galactose oxidase catalyses the oxidation of the hydroxyl group at the C6 position in D-galactose; neuraminidase hydrolyses sialic acid residues from glycoproteins; and kelch may have a cytoskeletal function, as it is localised to the actin-rich ring canals that connect the 15 nurse cells to the developing oocyte in Drosophila []. Nevertheless, based on the location of the kelch pattern in the catalytic unit in galactose oxidase, functionally important residues have been predicted in glyoxal oxidase []. This entry represents a type of kelch sequence motif that comprises one beta-sheet blade.; GO: 0005515 protein binding; PDB: 2XN4_A 2WOZ_A 3II7_A 4ASC_A 1U6D_X 1ZGK_A 2FLU_X 2VPJ_A 2DYH_A 1X2R_A ....
Probab=98.64 E-value=3.3e-08 Score=75.17 Aligned_cols=44 Identities=32% Similarity=0.611 Sum_probs=40.8
Q ss_pred CceeeEEEEECCEEEEEccccCCCCCcCcEEEEEcCCCceEecc
Q 005043 197 ARSGHTVVRASSVLILFGGEDGKRRKLNDLHMFDLKSLTWLPLH 240 (717)
Q Consensus 197 ~R~~hs~~~~~~~Lyv~GG~~~~~~~~~~v~~yD~~t~~W~~l~ 240 (717)
||.+|++++++++|||+||.+.....++++++||+.+++|+.++
T Consensus 1 pR~~~~~~~~~~~iyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~ 44 (47)
T PF01344_consen 1 PRSGHAAVVVGNKIYVIGGYDGNNQPTNSVEVYDPETNTWEELP 44 (47)
T ss_dssp -BBSEEEEEETTEEEEEEEBESTSSBEEEEEEEETTTTEEEEEE
T ss_pred CCccCEEEEECCEEEEEeeecccCceeeeEEEEeCCCCEEEEcC
Confidence 68999999999999999999986678999999999999999987
No 38
>PF13415 Kelch_3: Galactose oxidase, central domain
Probab=98.63 E-value=5.6e-08 Score=74.85 Aligned_cols=48 Identities=40% Similarity=0.812 Sum_probs=42.3
Q ss_pred CCEEEEEeccC-CCCCCceEEEEEECCCCcEEEeeecCCCCCCceeeEEEEE
Q 005043 156 GKKVLLVGGKT-DSGSDRVSVWTFDTETECWSVVEAKGDIPVARSGHTVVRA 206 (717)
Q Consensus 156 ~~~Iyv~GG~~-~~~~~~~~v~~yD~~t~~W~~l~~~g~~P~~R~~hs~~~~ 206 (717)
+++||||||.. ......+++|+||+.+++|+.+. ++|.+|++|+++++
T Consensus 1 g~~~~vfGG~~~~~~~~~nd~~~~~~~~~~W~~~~---~~P~~R~~h~~~~i 49 (49)
T PF13415_consen 1 GNKLYVFGGYDDDGGTRLNDVWVFDLDTNTWTRIG---DLPPPRSGHTATVI 49 (49)
T ss_pred CCEEEEECCcCCCCCCEecCEEEEECCCCEEEECC---CCCCCccceEEEEC
Confidence 57899999998 45667889999999999999984 69999999999864
No 39
>PLN02772 guanylate kinase
Probab=98.62 E-value=2.1e-07 Score=101.28 Aligned_cols=90 Identities=20% Similarity=0.320 Sum_probs=78.0
Q ss_pred CCCCCCCcccEEEEECCcEEEEEcCCCCCC-CCCeEEEEECCCCcEEEeecCCCCCCCCcceEEEEE-CCEEEEEecCCC
Q 005043 243 GTGPSPRSNHVAALYDDKNLLIFGGSSKSK-TLNDLYSLDFETMIWTRIKIRGFHPSPRAGCCGVLC-GTKWYIAGGGSR 320 (717)
Q Consensus 243 g~~P~~R~~~aa~~~~~~~lyV~GG~~~~~-~~ndv~~yd~~t~~W~~v~~~g~~P~~R~~~sav~~-~~~IyV~GG~~~ 320 (717)
|..+.++..++++.++++ +||+||.+... ..+.+++||..+.+|......|..|.+|.+|+++++ +++|+|+++...
T Consensus 19 ~~~~~~~~~~tav~igdk-~yv~GG~~d~~~~~~~v~i~D~~t~~W~~P~V~G~~P~~r~GhSa~v~~~~rilv~~~~~~ 97 (398)
T PLN02772 19 GFGVKPKNRETSVTIGDK-TYVIGGNHEGNTLSIGVQILDKITNNWVSPIVLGTGPKPCKGYSAVVLNKDRILVIKKGSA 97 (398)
T ss_pred CccCCCCCcceeEEECCE-EEEEcccCCCccccceEEEEECCCCcEecccccCCCCCCCCcceEEEECCceEEEEeCCCC
Confidence 344568889999999999 99999987754 789999999999999999999999999999999998 689999998654
Q ss_pred CCccCeEEEEECCCC
Q 005043 321 KKRHAETLIFDILKG 335 (717)
Q Consensus 321 ~~~~~dv~~yD~~t~ 335 (717)
. -.++|.+.+.|.
T Consensus 98 ~--~~~~w~l~~~t~ 110 (398)
T PLN02772 98 P--DDSIWFLEVDTP 110 (398)
T ss_pred C--ccceEEEEcCCH
Confidence 4 278999988774
No 40
>PF13418 Kelch_4: Galactose oxidase, central domain; PDB: 2UVK_B.
Probab=98.60 E-value=4.2e-08 Score=75.41 Aligned_cols=47 Identities=38% Similarity=0.733 Sum_probs=32.2
Q ss_pred CceeeEEEEE-CCEEEEEccccCCCCCcCcEEEEEcCCCceEeccCCCCCC
Q 005043 197 ARSGHTVVRA-SSVLILFGGEDGKRRKLNDLHMFDLKSLTWLPLHCTGTGP 246 (717)
Q Consensus 197 ~R~~hs~~~~-~~~Lyv~GG~~~~~~~~~~v~~yD~~t~~W~~l~~~g~~P 246 (717)
||++|+++.+ +++||||||.+..+..++++|+||+.+++|++++ ++|
T Consensus 1 pR~~h~~~~~~~~~i~v~GG~~~~~~~~~d~~~~d~~~~~W~~~~---~~P 48 (49)
T PF13418_consen 1 PRYGHSAVSIGDNSIYVFGGRDSSGSPLNDLWIFDIETNTWTRLP---SMP 48 (49)
T ss_dssp --BS-EEEEE-TTEEEEE--EEE-TEE---EEEEETTTTEEEE-----SS-
T ss_pred CcceEEEEEEeCCeEEEECCCCCCCcccCCEEEEECCCCEEEECC---CCC
Confidence 6899999998 5899999999988778999999999999999995 555
No 41
>PF07646 Kelch_2: Kelch motif; InterPro: IPR011498 Kelch is a 50-residue motif, named after the Drosophila mutant in which it was first identified []. This sequence motif represents one beta-sheet blade, and several of these repeats can associate to form a beta-propeller. For instance, the motif appears 6 times in Drosophila egg-chamber regulatory protein, creating a 6-bladed beta-propeller. The motif is also found in mouse protein MIPP [] and in a number of poxviruses. In addition, kelch repeats have been recognised in alpha- and beta-scruin [, ], and in galactose oxidase from the fungus Dactylium dendroides [, ]. The structure of galactose oxidase reveals that the repeated sequence corresponds to a 4-stranded anti-parallel beta-sheet motif that forms the repeat unit in a super-barrel structural fold []. The known functions of kelch-containing proteins are diverse: scruin is an actin cross-linking protein; galactose oxidase catalyses the oxidation of the hydroxyl group at the C6 position in D-galactose; neuraminidase hydrolyses sialic acid residues from glycoproteins; and kelch may have a cytoskeletal function, as it is localised to the actin-rich ring canals that connect the 15 nurse cells to the developing oocyte in Drosophila []. Nevertheless, based on the location of the kelch pattern in the catalytic unit in galactose oxidase, functionally important residues have been predicted in glyoxal oxidase []. This entry represents a type of kelch sequence motif that comprises one beta-sheet blade.; GO: 0005515 protein binding
Probab=98.57 E-value=1.4e-07 Score=72.60 Aligned_cols=45 Identities=31% Similarity=0.543 Sum_probs=40.2
Q ss_pred CceeeEEEEECCEEEEEccc--cCCCCCcCcEEEEEcCCCceEeccC
Q 005043 197 ARSGHTVVRASSVLILFGGE--DGKRRKLNDLHMFDLKSLTWLPLHC 241 (717)
Q Consensus 197 ~R~~hs~~~~~~~Lyv~GG~--~~~~~~~~~v~~yD~~t~~W~~l~~ 241 (717)
+|++|++++++++||||||+ .......+++++||+.+++|+.+++
T Consensus 1 ~r~~hs~~~~~~kiyv~GG~~~~~~~~~~~~v~~~d~~t~~W~~~~~ 47 (49)
T PF07646_consen 1 PRYGHSAVVLDGKIYVFGGYGTDNGGSSSNDVWVFDTETNQWTELSP 47 (49)
T ss_pred CccceEEEEECCEEEEECCcccCCCCcccceeEEEECCCCEEeecCC
Confidence 68999999999999999999 4445688999999999999999973
No 42
>PF07646 Kelch_2: Kelch motif; InterPro: IPR011498 Kelch is a 50-residue motif, named after the Drosophila mutant in which it was first identified []. This sequence motif represents one beta-sheet blade, and several of these repeats can associate to form a beta-propeller. For instance, the motif appears 6 times in Drosophila egg-chamber regulatory protein, creating a 6-bladed beta-propeller. The motif is also found in mouse protein MIPP [] and in a number of poxviruses. In addition, kelch repeats have been recognised in alpha- and beta-scruin [, ], and in galactose oxidase from the fungus Dactylium dendroides [, ]. The structure of galactose oxidase reveals that the repeated sequence corresponds to a 4-stranded anti-parallel beta-sheet motif that forms the repeat unit in a super-barrel structural fold []. The known functions of kelch-containing proteins are diverse: scruin is an actin cross-linking protein; galactose oxidase catalyses the oxidation of the hydroxyl group at the C6 position in D-galactose; neuraminidase hydrolyses sialic acid residues from glycoproteins; and kelch may have a cytoskeletal function, as it is localised to the actin-rich ring canals that connect the 15 nurse cells to the developing oocyte in Drosophila []. Nevertheless, based on the location of the kelch pattern in the catalytic unit in galactose oxidase, functionally important residues have been predicted in glyoxal oxidase []. This entry represents a type of kelch sequence motif that comprises one beta-sheet blade.; GO: 0005515 protein binding
Probab=98.53 E-value=1.8e-07 Score=71.96 Aligned_cols=45 Identities=36% Similarity=0.641 Sum_probs=40.7
Q ss_pred CcceeEEEEECCEEEEEccc---CCCCCcccEEEEEcCCCceEEcccc
Q 005043 88 PRFNHAAAVIGNKMIVVGGE---SGNGLLDDVQVLNFDRFSWTAASSK 132 (717)
Q Consensus 88 ~R~~haav~~~~~lyV~GG~---~~~~~~~~v~~yd~~t~~W~~l~~~ 132 (717)
||++|++++++++||||||. ......+++++||+.+++|+.++++
T Consensus 1 ~r~~hs~~~~~~kiyv~GG~~~~~~~~~~~~v~~~d~~t~~W~~~~~~ 48 (49)
T PF07646_consen 1 PRYGHSAVVLDGKIYVFGGYGTDNGGSSSNDVWVFDTETNQWTELSPM 48 (49)
T ss_pred CccceEEEEECCEEEEECCcccCCCCcccceeEEEECCCCEEeecCCC
Confidence 69999999999999999999 4555789999999999999999874
No 43
>PF07250 Glyoxal_oxid_N: Glyoxal oxidase N-terminus; InterPro: IPR009880 This entry represents the N terminus (approximately 300 residues) of a number of plant and fungal glyoxal oxidase enzymes. Glyoxal oxidase catalyses the oxidation of aldehydes to carboxylic acids, coupled with reduction of dioxygen to hydrogen peroxide. It is an essential component of the extracellular lignin degradation pathways of the wood-rot fungus Phanerochaete chrysosporium [].
Probab=98.52 E-value=7.1e-06 Score=84.51 Aligned_cols=151 Identities=15% Similarity=0.173 Sum_probs=99.3
Q ss_pred EEEEECCCCcEEEeeecCCCCCCceeeEEEE-ECCEEEEEccccCCCCCcCcEEEEEcCC----CceEeccCCCCCCCCC
Q 005043 175 VWTFDTETECWSVVEAKGDIPVARSGHTVVR-ASSVLILFGGEDGKRRKLNDLHMFDLKS----LTWLPLHCTGTGPSPR 249 (717)
Q Consensus 175 v~~yD~~t~~W~~l~~~g~~P~~R~~hs~~~-~~~~Lyv~GG~~~~~~~~~~v~~yD~~t----~~W~~l~~~g~~P~~R 249 (717)
--.||+.+++++.+.. +.--++.+.+. -+|++++.||.... ...+-.|++.+ ..|.+.. ..|-.+|
T Consensus 48 s~~yD~~tn~~rpl~v----~td~FCSgg~~L~dG~ll~tGG~~~G---~~~ir~~~p~~~~~~~~w~e~~--~~m~~~R 118 (243)
T PF07250_consen 48 SVEYDPNTNTFRPLTV----QTDTFCSGGAFLPDGRLLQTGGDNDG---NKAIRIFTPCTSDGTCDWTESP--NDMQSGR 118 (243)
T ss_pred EEEEecCCCcEEeccC----CCCCcccCcCCCCCCCEEEeCCCCcc---ccceEEEecCCCCCCCCceECc--ccccCCC
Confidence 5579999999998874 33333333333 46899999998653 35677788865 6798875 2588999
Q ss_pred cccEEEEECCcEEEEEcCCCCCCCCCeEEEEECC-C-----CcEEEeecCC-CCCCCCcceEEEEECCEEEEEecCCCCC
Q 005043 250 SNHVAALYDDKNLLIFGGSSKSKTLNDLYSLDFE-T-----MIWTRIKIRG-FHPSPRAGCCGVLCGTKWYIAGGGSRKK 322 (717)
Q Consensus 250 ~~~aa~~~~~~~lyV~GG~~~~~~~ndv~~yd~~-t-----~~W~~v~~~g-~~P~~R~~~sav~~~~~IyV~GG~~~~~ 322 (717)
.+.+++.+.+..++|+||.... .+.|-|. . ..|.-+.... ..+..-+-+..+.-+|+|||++..
T Consensus 119 WYpT~~~L~DG~vlIvGG~~~~-----t~E~~P~~~~~~~~~~~~~l~~~~~~~~~nlYP~~~llPdG~lFi~an~---- 189 (243)
T PF07250_consen 119 WYPTATTLPDGRVLIVGGSNNP-----TYEFWPPKGPGPGPVTLPFLSQTSDTLPNNLYPFVHLLPDGNLFIFANR---- 189 (243)
T ss_pred ccccceECCCCCEEEEeCcCCC-----cccccCCccCCCCceeeecchhhhccCccccCceEEEcCCCCEEEEEcC----
Confidence 9999999988779999998732 2333332 1 1122222110 123333334444559999999984
Q ss_pred ccCeEEEEECCCCcE-EEeecCCCC
Q 005043 323 RHAETLIFDILKGEW-SVAITSPSS 346 (717)
Q Consensus 323 ~~~dv~~yD~~t~~W-~~l~~~p~~ 346 (717)
..++||+.++++ +.++..|..
T Consensus 190 ---~s~i~d~~~n~v~~~lP~lPg~ 211 (243)
T PF07250_consen 190 ---GSIIYDYKTNTVVRTLPDLPGG 211 (243)
T ss_pred ---CcEEEeCCCCeEEeeCCCCCCC
Confidence 467899999987 677655543
No 44
>PF03089 RAG2: Recombination activating protein 2; InterPro: IPR004321 The variable portion of the genes encoding immunoglobulins and T cell receptors are assembled from component V, D, and J DNA segments by a site-specific recombination reaction termed V(D)J recombination. V(D)J recombination is targeted to specific sites on the chromosome by recombination signal sequences (RSSs) that flank antigen receptor gene segments. The RSS consists of a conserved heptamer (consensus, 5'-CACAGTG-3') and nonamer (consensus, 5'-ACAAAAACC-3') separated by a spacer of either 12 or 23 bp. Efficient recombination occurs between a 12-RSS and a 23-RSS, a restriction known as the 12/23 rule. V(D)J recombination can be divided into two phases, DNA cleavage and DNA joining. DNA cleavage requires two lymphocyte-specific factors, the products of the recombination activating genes, RAG1 and RAG2, which together recognise the RSSs and create double strand breaks at the RSS-coding segment junctions []. RAG-mediated DNA cleavage occurs in a synaptic complex termed the paired complex, which is constituted from two distinct RSS-RAG complexes, a 12-SC and a 23-SC (where SC stands for signal complex). The DNA cleavage reaction involves two distinct enzymatic steps, initial nicking that creates a 3'-OH between a coding segment and its RSS, followed by hairpin formation in which the newly created 3'-OH attacks a phosphodiester bond on the opposite DNA strand. This generates a blunt, 5' phosphorylated signal end containing all of the RSS elements, and a covalently sealed hairpin coding end. The second phase of V(D)J recombination, in which broken DNA fragments are processed and joined, is less well characterised. Signal ends are typically joined precisely to form a signal joint, whereas joining of the coding ends requires the hairpin structure to be opened and typically involves nucleotide addition and deletion before formation of the coding joint. The factors involved in these processes include ubiquitously expressed proteins involved in the repair of DNA double strand breaks by nonhomologous end joining, terminal deoxynucleotidyl transferase, and Artemis protein. In addition to their critical roles in RSS recognition and DNA cleavage, the RAG proteins may perform two distinct types of functions in the postcleavage phase of V(D)J. A structural function has been inferred from the finding that, after DNA cleavage in vitro, the DNA ends remain associated with the RAG proteins in a "four end" complex known as the cleaved signal complex. After release of the coding ends in vitro, and after coding joint formation in vivo, the RAG proteins remain in a stable signal end complex (SEC) containing the two signal ends. These postcleavage complexes may serve as essential scaffolds for the second phase of the reaction, with the RAG proteins acting to organise the DNA processing and joining events. The second type of RAG protein-mediated postcleavage activity is the catalysis of phosphodiester bond hydrolysis and strand transfer reactions. The RAG proteins are capable of opening hairpin coding ends in vitro. The RAG proteins also show 3' flap endonuclease activity that may contribute to coding end processing/joining and can utilise the 3' OH group on the signal ends to attack hairpin coding ends (forming hybrid or open/shut joints) or virtually any DNA duplex (forming a transposition product).; GO: 0003677 DNA binding, 0006310 DNA recombination, 0005634 nucleus
Probab=98.49 E-value=1e-05 Score=82.74 Aligned_cols=159 Identities=21% Similarity=0.276 Sum_probs=103.0
Q ss_pred EEEEEeccCCCCCCceEEEEEECCCCc--------EEEeeecCCCCCCceeeEEEEE----CCEEEEEccccCC--C---
Q 005043 158 KVLLVGGKTDSGSDRVSVWTFDTETEC--------WSVVEAKGDIPVARSGHTVVRA----SSVLILFGGEDGK--R--- 220 (717)
Q Consensus 158 ~Iyv~GG~~~~~~~~~~v~~yD~~t~~--------W~~l~~~g~~P~~R~~hs~~~~----~~~Lyv~GG~~~~--~--- 220 (717)
..+|.||.+.++...+.+|+....+.. ..+....|++|.+|++|++.++ +...++|||+..- +
T Consensus 40 ~YlIHGGrTPNNElS~~LY~ls~~s~~cNkK~tl~C~EKeLvGdvP~aRYGHt~~vV~SrGKta~VlFGGRSY~P~~qRT 119 (337)
T PF03089_consen 40 QYLIHGGRTPNNELSSSLYILSVDSRGCNKKVTLCCQEKELVGDVPEARYGHTINVVHSRGKTACVLFGGRSYMPPGQRT 119 (337)
T ss_pred eEEecCCcCCCcccccceEEEEeecCCCCceeEEEEecceecCCCCcccccceEEEEEECCcEEEEEECCcccCCccccc
Confidence 366789998877777788888765432 3444556889999999998876 2468999998421 0
Q ss_pred --------CCcCcEEEEEcCCCceEeccCCCCCCCCCcccEEEEECCcEEEEEcCCCC--CCCCCeEEEEECCC---CcE
Q 005043 221 --------RKLNDLHMFDLKSLTWLPLHCTGTGPSPRSNHVAALYDDKNLLIFGGSSK--SKTLNDLYSLDFET---MIW 287 (717)
Q Consensus 221 --------~~~~~v~~yD~~t~~W~~l~~~g~~P~~R~~~aa~~~~~~~lyV~GG~~~--~~~~ndv~~yd~~t---~~W 287 (717)
.....++.+|+.-+.++... .+.+..+..+|.+..-++. +|++||..- +.....++++..+- .-+
T Consensus 120 TenWNsVvDC~P~VfLiDleFGC~tah~-lpEl~dG~SFHvslar~D~-VYilGGHsl~sd~Rpp~l~rlkVdLllGSP~ 197 (337)
T PF03089_consen 120 TENWNSVVDCPPQVFLIDLEFGCCTAHT-LPELQDGQSFHVSLARNDC-VYILGGHSLESDSRPPRLYRLKVDLLLGSPA 197 (337)
T ss_pred hhhcceeccCCCeEEEEecccccccccc-chhhcCCeEEEEEEecCce-EEEEccEEccCCCCCCcEEEEEEeecCCCce
Confidence 13456889999887776542 2356667888888887777 999999853 22334466665431 112
Q ss_pred EEeecCCCCCCCCcceEEEEE---CCEEEEEecCCCC
Q 005043 288 TRIKIRGFHPSPRAGCCGVLC---GTKWYIAGGGSRK 321 (717)
Q Consensus 288 ~~v~~~g~~P~~R~~~sav~~---~~~IyV~GG~~~~ 321 (717)
..... ++......++++. .+..+|+||+..+
T Consensus 198 vsC~v---l~~glSisSAIvt~~~~~e~iIlGGY~sd 231 (337)
T PF03089_consen 198 VSCTV---LQGGLSISSAIVTQTGPHEYIILGGYQSD 231 (337)
T ss_pred eEEEE---CCCCceEeeeeEeecCCCceEEEeccccc
Confidence 22222 1334444444432 4678899998543
No 45
>PF13418 Kelch_4: Galactose oxidase, central domain; PDB: 2UVK_B.
Probab=98.48 E-value=1.5e-07 Score=72.41 Aligned_cols=44 Identities=32% Similarity=0.681 Sum_probs=30.5
Q ss_pred CcceeEEEEE-CCEEEEEcccCCC-CCcccEEEEEcCCCceEEccc
Q 005043 88 PRFNHAAAVI-GNKMIVVGGESGN-GLLDDVQVLNFDRFSWTAASS 131 (717)
Q Consensus 88 ~R~~haav~~-~~~lyV~GG~~~~-~~~~~v~~yd~~t~~W~~l~~ 131 (717)
||++|+++.+ +++||||||.+.. ..++++|+||+.+++|+++++
T Consensus 1 pR~~h~~~~~~~~~i~v~GG~~~~~~~~~d~~~~d~~~~~W~~~~~ 46 (49)
T PF13418_consen 1 PRYGHSAVSIGDNSIYVFGGRDSSGSPLNDLWIFDIETNTWTRLPS 46 (49)
T ss_dssp --BS-EEEEE-TTEEEEE--EEE-TEE---EEEEETTTTEEEE--S
T ss_pred CcceEEEEEEeCCeEEEECCCCCCCcccCCEEEEECCCCEEEECCC
Confidence 6999999999 5899999999876 589999999999999999966
No 46
>PF13854 Kelch_5: Kelch motif
Probab=98.39 E-value=5.8e-07 Score=66.86 Aligned_cols=40 Identities=40% Similarity=0.781 Sum_probs=35.8
Q ss_pred CCCCcceeEEEEECCEEEEEcccC--CCCCcccEEEEEcCCC
Q 005043 85 KPIPRFNHAAAVIGNKMIVVGGES--GNGLLDDVQVLNFDRF 124 (717)
Q Consensus 85 ~P~~R~~haav~~~~~lyV~GG~~--~~~~~~~v~~yd~~t~ 124 (717)
+|.+|++|++++++++|||+||.+ ....++++|+||+.++
T Consensus 1 ~P~~R~~hs~~~~~~~iyi~GG~~~~~~~~~~d~~~l~l~sf 42 (42)
T PF13854_consen 1 IPSPRYGHSAVVVGNNIYIFGGYSGNNNSYSNDLYVLDLPSF 42 (42)
T ss_pred CCCCccceEEEEECCEEEEEcCccCCCCCEECcEEEEECCCC
Confidence 488999999999999999999998 4667999999998763
No 47
>PF13854 Kelch_5: Kelch motif
Probab=98.32 E-value=1.1e-06 Score=65.41 Aligned_cols=41 Identities=39% Similarity=0.658 Sum_probs=36.7
Q ss_pred CCCCceeeEEEEECCEEEEEccccC-CCCCcCcEEEEEcCCC
Q 005043 194 IPVARSGHTVVRASSVLILFGGEDG-KRRKLNDLHMFDLKSL 234 (717)
Q Consensus 194 ~P~~R~~hs~~~~~~~Lyv~GG~~~-~~~~~~~v~~yD~~t~ 234 (717)
+|.+|.+|++++++++||||||.+. ....++++|+||+.+.
T Consensus 1 ~P~~R~~hs~~~~~~~iyi~GG~~~~~~~~~~d~~~l~l~sf 42 (42)
T PF13854_consen 1 IPSPRYGHSAVVVGNNIYIFGGYSGNNNSYSNDLYVLDLPSF 42 (42)
T ss_pred CCCCccceEEEEECCEEEEEcCccCCCCCEECcEEEEECCCC
Confidence 4889999999999999999999994 6678999999998763
No 48
>smart00612 Kelch Kelch domain.
Probab=98.25 E-value=1.5e-06 Score=65.44 Aligned_cols=47 Identities=32% Similarity=0.684 Sum_probs=41.1
Q ss_pred EEEEEccccCCCCCcCcEEEEEcCCCceEeccCCCCCCCCCcccEEEEECC
Q 005043 209 VLILFGGEDGKRRKLNDLHMFDLKSLTWLPLHCTGTGPSPRSNHVAALYDD 259 (717)
Q Consensus 209 ~Lyv~GG~~~~~~~~~~v~~yD~~t~~W~~l~~~g~~P~~R~~~aa~~~~~ 259 (717)
+||++||.... ..++++++||+.+++|+.++ ++|.+|..|+++++++
T Consensus 1 ~iyv~GG~~~~-~~~~~v~~yd~~~~~W~~~~---~~~~~r~~~~~~~~~g 47 (47)
T smart00612 1 KIYVVGGFDGG-QRLKSVEVYDPETNKWTPLP---SMPTPRSGHGVAVING 47 (47)
T ss_pred CEEEEeCCCCC-ceeeeEEEECCCCCeEccCC---CCCCccccceEEEeCC
Confidence 48999998763 56899999999999999987 8999999999988764
No 49
>smart00612 Kelch Kelch domain.
Probab=98.09 E-value=5.1e-06 Score=62.48 Aligned_cols=46 Identities=26% Similarity=0.441 Sum_probs=40.5
Q ss_pred EEEEcCCCCCCCCCeEEEEECCCCcEEEeecCCCCCCCCcceEEEEECC
Q 005043 262 LLIFGGSSKSKTLNDLYSLDFETMIWTRIKIRGFHPSPRAGCCGVLCGT 310 (717)
Q Consensus 262 lyV~GG~~~~~~~ndv~~yd~~t~~W~~v~~~g~~P~~R~~~sav~~~~ 310 (717)
|||+||.......+++++||+.+++|+.++.+ |.+|..++++.+++
T Consensus 2 iyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~~---~~~r~~~~~~~~~g 47 (47)
T smart00612 2 IYVVGGFDGGQRLKSVEVYDPETNKWTPLPSM---PTPRSGHGVAVING 47 (47)
T ss_pred EEEEeCCCCCceeeeEEEECCCCCeEccCCCC---CCccccceEEEeCC
Confidence 89999997767789999999999999998765 88999999888764
No 50
>TIGR01640 F_box_assoc_1 F-box protein interaction domain. This model describes a large family of plant domains, with several hundred members in Arabidopsis thaliana. Most examples are found C-terminal to an F-box (pfam00646), a 60 amino acid motif involved in ubiquitination of target proteins to mark them for degradation. Two-hybid experiments support the idea that most members are interchangeable F-box subunits of SCF E3 complexes. Some members have two copies of this domain.
Probab=98.09 E-value=0.0014 Score=67.25 Aligned_cols=202 Identities=13% Similarity=0.136 Sum_probs=112.2
Q ss_pred EEEEEECCCCcEEEeeecCCCCCC-ceee-EEEEEC----C-EEEEEccccCCCCCcCcEEEEEcCCCceEeccCCCCCC
Q 005043 174 SVWTFDTETECWSVVEAKGDIPVA-RSGH-TVVRAS----S-VLILFGGEDGKRRKLNDLHMFDLKSLTWLPLHCTGTGP 246 (717)
Q Consensus 174 ~v~~yD~~t~~W~~l~~~g~~P~~-R~~h-s~~~~~----~-~Lyv~GG~~~~~~~~~~v~~yD~~t~~W~~l~~~g~~P 246 (717)
.+.++||.|++|..++... .+.. ...+ ....++ . +++.+...... .....+++|+..++.|+.+... .+
T Consensus 15 ~~~V~NP~T~~~~~LP~~~-~~~~~~~~~~~~~G~d~~~~~YKVv~~~~~~~~-~~~~~~~Vys~~~~~Wr~~~~~--~~ 90 (230)
T TIGR01640 15 RLVVWNPSTGQSRWLPTPK-SRRSNKESDTYFLGYDPIEKQYKVLCFSDRSGN-RNQSEHQVYTLGSNSWRTIECS--PP 90 (230)
T ss_pred cEEEECCCCCCEEecCCCC-CcccccccceEEEeecccCCcEEEEEEEeecCC-CCCccEEEEEeCCCCccccccC--CC
Confidence 5899999999999997421 1100 1111 111122 1 55555443211 1345789999999999998621 12
Q ss_pred CCCcccEEEEECCcEEEEEcCCCCCCCCCeEEEEECCCCcEEE-eecCCCCCCCC----cceEEEEECCEEEEEecCCCC
Q 005043 247 SPRSNHVAALYDDKNLLIFGGSSKSKTLNDLYSLDFETMIWTR-IKIRGFHPSPR----AGCCGVLCGTKWYIAGGGSRK 321 (717)
Q Consensus 247 ~~R~~~aa~~~~~~~lyV~GG~~~~~~~ndv~~yd~~t~~W~~-v~~~g~~P~~R----~~~sav~~~~~IyV~GG~~~~ 321 (717)
........+.++|. +|-+...........|..||+.+.+|.. ++. |..+ .....+.++|++.++......
T Consensus 91 ~~~~~~~~v~~~G~-lyw~~~~~~~~~~~~IvsFDl~~E~f~~~i~~----P~~~~~~~~~~~L~~~~G~L~~v~~~~~~ 165 (230)
T TIGR01640 91 HHPLKSRGVCINGV-LYYLAYTLKTNPDYFIVSFDVSSERFKEFIPL----PCGNSDSVDYLSLINYKGKLAVLKQKKDT 165 (230)
T ss_pred CccccCCeEEECCE-EEEEEEECCCCCcEEEEEEEcccceEeeeeec----CccccccccceEEEEECCEEEEEEecCCC
Confidence 11112225667777 6655533221111269999999999995 543 2222 234566678999888764321
Q ss_pred CccCeEEEEE-CCCCcEEEeecCCCC-CCCCCcceEEEEEEeCCCcEEEEEcCCCCCCCCeEEEEEccCC
Q 005043 322 KRHAETLIFD-ILKGEWSVAITSPSS-SVTSNKGFTLVLVQHKEKDFLVAFGGIKKEPSNQVEVLSIEKN 389 (717)
Q Consensus 322 ~~~~dv~~yD-~~t~~W~~l~~~p~~-~~~~r~g~s~v~v~~~~~~~I~v~GG~~~~~~n~v~vyd~~~~ 389 (717)
..-+||+.+ -....|++.-..+.. .+.....+....+.+ ++.|++..+.. ....+..||+.++
T Consensus 166 -~~~~IWvl~d~~~~~W~k~~~i~~~~~~~~~~~~~~~~~~~--~g~I~~~~~~~--~~~~~~~y~~~~~ 230 (230)
T TIGR01640 166 -NNFDLWVLNDAGKQEWSKLFTVPIPPLPDLVDDNFLSGFTD--KGEIVLCCEDE--NPFYIFYYNVGEN 230 (230)
T ss_pred -CcEEEEEECCCCCCceeEEEEEcCcchhhhhhheeEeEEee--CCEEEEEeCCC--CceEEEEEeccCC
Confidence 225789886 445679987655532 111211122222332 45566555421 1114899998875
No 51
>TIGR01640 F_box_assoc_1 F-box protein interaction domain. This model describes a large family of plant domains, with several hundred members in Arabidopsis thaliana. Most examples are found C-terminal to an F-box (pfam00646), a 60 amino acid motif involved in ubiquitination of target proteins to mark them for degradation. Two-hybid experiments support the idea that most members are interchangeable F-box subunits of SCF E3 complexes. Some members have two copies of this domain.
Probab=98.03 E-value=0.0016 Score=66.92 Aligned_cols=202 Identities=13% Similarity=0.117 Sum_probs=114.0
Q ss_pred ccEEEEEcCCCceEEccccccCCCCCCCCCCCcccceEEEEEC----C-EEEEEeccCCCCCCceEEEEEECCCCcEEEe
Q 005043 114 DDVQVLNFDRFSWTAASSKLYLSPSSLPLKIPACRGHSLISWG----K-KVLLVGGKTDSGSDRVSVWTFDTETECWSVV 188 (717)
Q Consensus 114 ~~v~~yd~~t~~W~~l~~~~~~~~~~~~~~~p~r~~hs~v~~~----~-~Iyv~GG~~~~~~~~~~v~~yD~~t~~W~~l 188 (717)
..+.++||.|..|..+++.... ...+.+. .....++ . +|+.+..... ......+++|+..++.|+.+
T Consensus 14 ~~~~V~NP~T~~~~~LP~~~~~------~~~~~~~-~~~~G~d~~~~~YKVv~~~~~~~-~~~~~~~~Vys~~~~~Wr~~ 85 (230)
T TIGR01640 14 KRLVVWNPSTGQSRWLPTPKSR------RSNKESD-TYFLGYDPIEKQYKVLCFSDRSG-NRNQSEHQVYTLGSNSWRTI 85 (230)
T ss_pred CcEEEECCCCCCEEecCCCCCc------ccccccc-eEEEeecccCCcEEEEEEEeecC-CCCCccEEEEEeCCCCcccc
Confidence 4689999999999999862100 0001111 1111222 2 4555544321 11234789999999999998
Q ss_pred eecCCCCCCceeeEEEEECCEEEEEccccCCCCCcCcEEEEEcCCCceEe-ccCCCCCCCCCc----ccEEEEECCcEEE
Q 005043 189 EAKGDIPVARSGHTVVRASSVLILFGGEDGKRRKLNDLHMFDLKSLTWLP-LHCTGTGPSPRS----NHVAALYDDKNLL 263 (717)
Q Consensus 189 ~~~g~~P~~R~~hs~~~~~~~Lyv~GG~~~~~~~~~~v~~yD~~t~~W~~-l~~~g~~P~~R~----~~aa~~~~~~~ly 263 (717)
... .+........+.++|.||-+.-.... .....+..||+.+.+|.. ++ +|..+. ....+.++|+ |.
T Consensus 86 ~~~--~~~~~~~~~~v~~~G~lyw~~~~~~~-~~~~~IvsFDl~~E~f~~~i~----~P~~~~~~~~~~~L~~~~G~-L~ 157 (230)
T TIGR01640 86 ECS--PPHHPLKSRGVCINGVLYYLAYTLKT-NPDYFIVSFDVSSERFKEFIP----LPCGNSDSVDYLSLINYKGK-LA 157 (230)
T ss_pred ccC--CCCccccCCeEEECCEEEEEEEECCC-CCcEEEEEEEcccceEeeeee----cCccccccccceEEEEECCE-EE
Confidence 731 12111122266789998888754321 111269999999999995 53 343322 3345666776 66
Q ss_pred EEcCCCCCCCCCeEEEEE-CCCCcEEEeecCCCCCCCCc----ceEEEEECCEEEEEecCCCCCccCeEEEEECCCC
Q 005043 264 IFGGSSKSKTLNDLYSLD-FETMIWTRIKIRGFHPSPRA----GCCGVLCGTKWYIAGGGSRKKRHAETLIFDILKG 335 (717)
Q Consensus 264 V~GG~~~~~~~ndv~~yd-~~t~~W~~v~~~g~~P~~R~----~~sav~~~~~IyV~GG~~~~~~~~dv~~yD~~t~ 335 (717)
++....... .-+||+++ .....|+++-..+.++.+.. ....+..+++|++..+.. . ..-+..||+.++
T Consensus 158 ~v~~~~~~~-~~~IWvl~d~~~~~W~k~~~i~~~~~~~~~~~~~~~~~~~~g~I~~~~~~~-~--~~~~~~y~~~~~ 230 (230)
T TIGR01640 158 VLKQKKDTN-NFDLWVLNDAGKQEWSKLFTVPIPPLPDLVDDNFLSGFTDKGEIVLCCEDE-N--PFYIFYYNVGEN 230 (230)
T ss_pred EEEecCCCC-cEEEEEECCCCCCceeEEEEEcCcchhhhhhheeEeEEeeCCEEEEEeCCC-C--ceEEEEEeccCC
Confidence 655432211 13677775 44667998655432122222 123455688988877631 1 123889998764
No 52
>PF07250 Glyoxal_oxid_N: Glyoxal oxidase N-terminus; InterPro: IPR009880 This entry represents the N terminus (approximately 300 residues) of a number of plant and fungal glyoxal oxidase enzymes. Glyoxal oxidase catalyses the oxidation of aldehydes to carboxylic acids, coupled with reduction of dioxygen to hydrogen peroxide. It is an essential component of the extracellular lignin degradation pathways of the wood-rot fungus Phanerochaete chrysosporium [].
Probab=97.90 E-value=0.00021 Score=73.72 Aligned_cols=143 Identities=17% Similarity=0.122 Sum_probs=91.1
Q ss_pred cEEEEEcCCCceEeccCCCCCCCCCcccEEEEECCcEEEEEcCCCCCCCCCeEEEEECCC----CcEEEeecCCCCCCCC
Q 005043 225 DLHMFDLKSLTWLPLHCTGTGPSPRSNHVAALYDDKNLLIFGGSSKSKTLNDLYSLDFET----MIWTRIKIRGFHPSPR 300 (717)
Q Consensus 225 ~v~~yD~~t~~W~~l~~~g~~P~~R~~~aa~~~~~~~lyV~GG~~~~~~~ndv~~yd~~t----~~W~~v~~~g~~P~~R 300 (717)
.-..||+.+++++.+. .+.--++.+.+.+.+..+++.||...+ ...+..|++.+ ..|...... +-.+|
T Consensus 47 ~s~~yD~~tn~~rpl~----v~td~FCSgg~~L~dG~ll~tGG~~~G--~~~ir~~~p~~~~~~~~w~e~~~~--m~~~R 118 (243)
T PF07250_consen 47 HSVEYDPNTNTFRPLT----VQTDTFCSGGAFLPDGRLLQTGGDNDG--NKAIRIFTPCTSDGTCDWTESPND--MQSGR 118 (243)
T ss_pred EEEEEecCCCcEEecc----CCCCCcccCcCCCCCCCEEEeCCCCcc--ccceEEEecCCCCCCCCceECccc--ccCCC
Confidence 3567999999999885 333333444445555559999998653 34577888754 679887653 57899
Q ss_pred cceEEEEE-CCEEEEEecCCCCCccCeEEEEECC-C-----CcEEEeecCCCCCCCCCcceE-EEEEEeCCCcEEEEEcC
Q 005043 301 AGCCGVLC-GTKWYIAGGGSRKKRHAETLIFDIL-K-----GEWSVAITSPSSSVTSNKGFT-LVLVQHKEKDFLVAFGG 372 (717)
Q Consensus 301 ~~~sav~~-~~~IyV~GG~~~~~~~~dv~~yD~~-t-----~~W~~l~~~p~~~~~~r~g~s-~v~v~~~~~~~I~v~GG 372 (717)
...+++.+ +|+++|+||.... .+.|-+. . ..|..+..... ..+...|- +.++. +++||+|+.
T Consensus 119 WYpT~~~L~DG~vlIvGG~~~~-----t~E~~P~~~~~~~~~~~~~l~~~~~--~~~~nlYP~~~llP---dG~lFi~an 188 (243)
T PF07250_consen 119 WYPTATTLPDGRVLIVGGSNNP-----TYEFWPPKGPGPGPVTLPFLSQTSD--TLPNNLYPFVHLLP---DGNLFIFAN 188 (243)
T ss_pred ccccceECCCCCEEEEeCcCCC-----cccccCCccCCCCceeeecchhhhc--cCccccCceEEEcC---CCCEEEEEc
Confidence 99998887 8999999998732 2333333 1 12222221111 11222232 33333 677999998
Q ss_pred CCCCCCCeEEEEEccCCcc
Q 005043 373 IKKEPSNQVEVLSIEKNES 391 (717)
Q Consensus 373 ~~~~~~n~v~vyd~~~~eW 391 (717)
. .-.+||+.++++
T Consensus 189 ~------~s~i~d~~~n~v 201 (243)
T PF07250_consen 189 R------GSIIYDYKTNTV 201 (243)
T ss_pred C------CcEEEeCCCCeE
Confidence 6 568889999875
No 53
>PRK11138 outer membrane biogenesis protein BamB; Provisional
Probab=97.80 E-value=0.041 Score=61.22 Aligned_cols=255 Identities=15% Similarity=0.111 Sum_probs=137.3
Q ss_pred CCCCeEEeeecCCCCCCcceeEEEEECCEEEEEcccCCCCCcccEEEEEcCCC--ceEEccccccCCCCCCCCCCCcccc
Q 005043 72 NSENWMVLSIAGDKPIPRFNHAAAVIGNKMIVVGGESGNGLLDDVQVLNFDRF--SWTAASSKLYLSPSSLPLKIPACRG 149 (717)
Q Consensus 72 ~s~~W~~l~~~g~~P~~R~~haav~~~~~lyV~GG~~~~~~~~~v~~yd~~t~--~W~~l~~~~~~~~~~~~~~~p~r~~ 149 (717)
....|+.-... ..+......+.++.+++||+.+.. ..++.||..++ .|+.-..... ...+...+....
T Consensus 44 ~~~~W~~~~g~-g~~~~~~~~sPvv~~~~vy~~~~~------g~l~ald~~tG~~~W~~~~~~~~---~~~~~~~~~~~~ 113 (394)
T PRK11138 44 PTTVWSTSVGD-GVGDYYSRLHPAVAYNKVYAADRA------GLVKALDADTGKEIWSVDLSEKD---GWFSKNKSALLS 113 (394)
T ss_pred cceeeEEEcCC-CCccceeeeccEEECCEEEEECCC------CeEEEEECCCCcEeeEEcCCCcc---cccccccccccc
Confidence 34568754311 111111223446678999998653 26899998865 6976433100 000000112223
Q ss_pred eEEEEECCEEEEEeccCCCCCCceEEEEEECCCCc--EEEeeecCCCCCCceeeEEEEECCEEEEEccccCCCCCcCcEE
Q 005043 150 HSLISWGKKVLLVGGKTDSGSDRVSVWTFDTETEC--WSVVEAKGDIPVARSGHTVVRASSVLILFGGEDGKRRKLNDLH 227 (717)
Q Consensus 150 hs~v~~~~~Iyv~GG~~~~~~~~~~v~~yD~~t~~--W~~l~~~g~~P~~R~~hs~~~~~~~Lyv~GG~~~~~~~~~~v~ 227 (717)
.+.++.+++||+.+.. ..++.+|..|++ |+.-. +.. ...+.++.++.+|+..+ .+.++
T Consensus 114 ~~~~v~~~~v~v~~~~-------g~l~ald~~tG~~~W~~~~-----~~~-~~ssP~v~~~~v~v~~~-------~g~l~ 173 (394)
T PRK11138 114 GGVTVAGGKVYIGSEK-------GQVYALNAEDGEVAWQTKV-----AGE-ALSRPVVSDGLVLVHTS-------NGMLQ 173 (394)
T ss_pred cccEEECCEEEEEcCC-------CEEEEEECCCCCCcccccC-----CCc-eecCCEEECCEEEEECC-------CCEEE
Confidence 3456678888875321 269999998764 97643 111 12233456788887532 24589
Q ss_pred EEEcCCCc--eEeccCCCCCCC--CCcccEEEEECCcEEEEEcCCCCCCCCCeEEEEECCCCc--EEEeecCC--CCCC-
Q 005043 228 MFDLKSLT--WLPLHCTGTGPS--PRSNHVAALYDDKNLLIFGGSSKSKTLNDLYSLDFETMI--WTRIKIRG--FHPS- 298 (717)
Q Consensus 228 ~yD~~t~~--W~~l~~~g~~P~--~R~~~aa~~~~~~~lyV~GG~~~~~~~ndv~~yd~~t~~--W~~v~~~g--~~P~- 298 (717)
.||+.+++ |+.-. ..|. .+...+-++.++. +|+..+ + ..++.+|+.++. |+.-...+ ....
T Consensus 174 ald~~tG~~~W~~~~---~~~~~~~~~~~sP~v~~~~-v~~~~~-~-----g~v~a~d~~~G~~~W~~~~~~~~~~~~~~ 243 (394)
T PRK11138 174 ALNESDGAVKWTVNL---DVPSLTLRGESAPATAFGG-AIVGGD-N-----GRVSAVLMEQGQLIWQQRISQPTGATEID 243 (394)
T ss_pred EEEccCCCEeeeecC---CCCcccccCCCCCEEECCE-EEEEcC-C-----CEEEEEEccCChhhheeccccCCCccchh
Confidence 99998776 87643 1221 1212233344444 555333 2 358888987764 76432110 0000
Q ss_pred --CCcceEEEEECCEEEEEecCCCCCccCeEEEEECCCC--cEEEeecCCCCCCCCCcceEEEEEEeCCCcEEEEEcCCC
Q 005043 299 --PRAGCCGVLCGTKWYIAGGGSRKKRHAETLIFDILKG--EWSVAITSPSSSVTSNKGFTLVLVQHKEKDFLVAFGGIK 374 (717)
Q Consensus 299 --~R~~~sav~~~~~IyV~GG~~~~~~~~dv~~yD~~t~--~W~~l~~~p~~~~~~r~g~s~v~v~~~~~~~I~v~GG~~ 374 (717)
.....+-++.++.+|+.+. + ..++++|+.+. .|+.-. .. . ...+.. ++.||+....
T Consensus 244 ~~~~~~~sP~v~~~~vy~~~~-~-----g~l~ald~~tG~~~W~~~~----~~--~---~~~~~~----~~~vy~~~~~- 303 (394)
T PRK11138 244 RLVDVDTTPVVVGGVVYALAY-N-----GNLVALDLRSGQIVWKREY----GS--V---NDFAVD----GGRIYLVDQN- 303 (394)
T ss_pred cccccCCCcEEECCEEEEEEc-C-----CeEEEEECCCCCEEEeecC----CC--c---cCcEEE----CCEEEEEcCC-
Confidence 0112344566899998663 2 35899999876 487621 11 1 112222 6778876542
Q ss_pred CCCCCeEEEEEccCCc
Q 005043 375 KEPSNQVEVLSIEKNE 390 (717)
Q Consensus 375 ~~~~n~v~vyd~~~~e 390 (717)
..+.++|+.+.+
T Consensus 304 ----g~l~ald~~tG~ 315 (394)
T PRK11138 304 ----DRVYALDTRGGV 315 (394)
T ss_pred ----CeEEEEECCCCc
Confidence 368889987764
No 54
>PRK11138 outer membrane biogenesis protein BamB; Provisional
Probab=97.57 E-value=0.049 Score=60.65 Aligned_cols=227 Identities=16% Similarity=0.183 Sum_probs=124.7
Q ss_pred eeEEEEECCEEEEEcccCCCCCcccEEEEEcCCC--ceEEccccccCCCCCCCCCCCcccceEEEEECCEEEEEeccCCC
Q 005043 91 NHAAAVIGNKMIVVGGESGNGLLDDVQVLNFDRF--SWTAASSKLYLSPSSLPLKIPACRGHSLISWGKKVLLVGGKTDS 168 (717)
Q Consensus 91 ~haav~~~~~lyV~GG~~~~~~~~~v~~yd~~t~--~W~~l~~~~~~~~~~~~~~~p~r~~hs~v~~~~~Iyv~GG~~~~ 168 (717)
..+.++.+++||+.+. + ..++.+|..+. .|+.-.+. + ...+.++.++.+|+..+.
T Consensus 113 ~~~~~v~~~~v~v~~~-~-----g~l~ald~~tG~~~W~~~~~~------------~--~~ssP~v~~~~v~v~~~~--- 169 (394)
T PRK11138 113 SGGVTVAGGKVYIGSE-K-----GQVYALNAEDGEVAWQTKVAG------------E--ALSRPVVSDGLVLVHTSN--- 169 (394)
T ss_pred ccccEEECCEEEEEcC-C-----CEEEEEECCCCCCcccccCCC------------c--eecCCEEECCEEEEECCC---
Confidence 3345667888887542 2 25899999875 79765431 1 112335568888875432
Q ss_pred CCCceEEEEEECCCCc--EEEeeecCCCCC--CceeeEEEEECCEEEEEccccCCCCCcCcEEEEEcCCCc--eEeccC-
Q 005043 169 GSDRVSVWTFDTETEC--WSVVEAKGDIPV--ARSGHTVVRASSVLILFGGEDGKRRKLNDLHMFDLKSLT--WLPLHC- 241 (717)
Q Consensus 169 ~~~~~~v~~yD~~t~~--W~~l~~~g~~P~--~R~~hs~~~~~~~Lyv~GG~~~~~~~~~~v~~yD~~t~~--W~~l~~- 241 (717)
..++.||+.+++ |+.-.. .|. .+...+-++.++.+|+..+ -..++.+|+.+++ |+.-..
T Consensus 170 ----g~l~ald~~tG~~~W~~~~~---~~~~~~~~~~sP~v~~~~v~~~~~-------~g~v~a~d~~~G~~~W~~~~~~ 235 (394)
T PRK11138 170 ----GMLQALNESDGAVKWTVNLD---VPSLTLRGESAPATAFGGAIVGGD-------NGRVSAVLMEQGQLIWQQRISQ 235 (394)
T ss_pred ----CEEEEEEccCCCEeeeecCC---CCcccccCCCCCEEECCEEEEEcC-------CCEEEEEEccCChhhheecccc
Confidence 269999998876 876431 121 1112233445667666432 1357888888764 864311
Q ss_pred -CCCCCCCC---cccEEEEECCcEEEEEcCCCCCCCCCeEEEEECCCCc--EEEeecCCCCCCCCcceEEEEECCEEEEE
Q 005043 242 -TGTGPSPR---SNHVAALYDDKNLLIFGGSSKSKTLNDLYSLDFETMI--WTRIKIRGFHPSPRAGCCGVLCGTKWYIA 315 (717)
Q Consensus 242 -~g~~P~~R---~~~aa~~~~~~~lyV~GG~~~~~~~ndv~~yd~~t~~--W~~v~~~g~~P~~R~~~sav~~~~~IyV~ 315 (717)
.+.....| ...+-++.++. +|+.+. + ..++.+|+.+++ |+.-.. .. ...+..+++||+.
T Consensus 236 ~~~~~~~~~~~~~~~sP~v~~~~-vy~~~~-~-----g~l~ald~~tG~~~W~~~~~-----~~---~~~~~~~~~vy~~ 300 (394)
T PRK11138 236 PTGATEIDRLVDVDTTPVVVGGV-VYALAY-N-----GNLVALDLRSGQIVWKREYG-----SV---NDFAVDGGRIYLV 300 (394)
T ss_pred CCCccchhcccccCCCcEEECCE-EEEEEc-C-----CeEEEEECCCCCEEEeecCC-----Cc---cCcEEECCEEEEE
Confidence 00000001 11233344554 777543 2 358999998765 875311 11 1245678999987
Q ss_pred ecCCCCCccCeEEEEECCCC--cEEEeecCCCCCCCCCcceEEEEEEeCCCcEEEEEcCCCCCCCCeEEEEEccCCc
Q 005043 316 GGGSRKKRHAETLIFDILKG--EWSVAITSPSSSVTSNKGFTLVLVQHKEKDFLVAFGGIKKEPSNQVEVLSIEKNE 390 (717)
Q Consensus 316 GG~~~~~~~~dv~~yD~~t~--~W~~l~~~p~~~~~~r~g~s~v~v~~~~~~~I~v~GG~~~~~~n~v~vyd~~~~e 390 (717)
... ..++.+|+.+. .|+.-. ...+...+.++. ++.||+.... ..++++|+.+.+
T Consensus 301 ~~~------g~l~ald~~tG~~~W~~~~------~~~~~~~sp~v~----~g~l~v~~~~-----G~l~~ld~~tG~ 356 (394)
T PRK11138 301 DQN------DRVYALDTRGGVELWSQSD------LLHRLLTAPVLY----NGYLVVGDSE-----GYLHWINREDGR 356 (394)
T ss_pred cCC------CeEEEEECCCCcEEEcccc------cCCCcccCCEEE----CCEEEEEeCC-----CEEEEEECCCCC
Confidence 632 35999999876 476421 011111222333 5667654332 257788877765
No 55
>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A ....
Probab=97.39 E-value=0.12 Score=52.47 Aligned_cols=185 Identities=17% Similarity=0.233 Sum_probs=108.2
Q ss_pred EEECCEEEEEcccCCCCCcccEEEEEcCCC--ceEEccccccCCCCCCCCCCCcccceEEEEECCEEEEEeccCCCCCCc
Q 005043 95 AVIGNKMIVVGGESGNGLLDDVQVLNFDRF--SWTAASSKLYLSPSSLPLKIPACRGHSLISWGKKVLLVGGKTDSGSDR 172 (717)
Q Consensus 95 v~~~~~lyV~GG~~~~~~~~~v~~yd~~t~--~W~~l~~~~~~~~~~~~~~~p~r~~hs~v~~~~~Iyv~GG~~~~~~~~ 172 (717)
+..++.+|+..+ ...+++||+.+. .|+.-.+. ......+..++.||+..+.
T Consensus 33 ~~~~~~v~~~~~------~~~l~~~d~~tG~~~W~~~~~~--------------~~~~~~~~~~~~v~v~~~~------- 85 (238)
T PF13360_consen 33 VPDGGRVYVASG------DGNLYALDAKTGKVLWRFDLPG--------------PISGAPVVDGGRVYVGTSD------- 85 (238)
T ss_dssp EEETTEEEEEET------TSEEEEEETTTSEEEEEEECSS--------------CGGSGEEEETTEEEEEETT-------
T ss_pred EEeCCEEEEEcC------CCEEEEEECCCCCEEEEeeccc--------------cccceeeecccccccccce-------
Confidence 347888988843 237999999776 57765431 1111247778999888632
Q ss_pred eEEEEEECCCCc--EEE-eeecCCCCCCceeeEEEEECCEEEEEccccCCCCCcCcEEEEEcCCCc--eEeccCCCCCCC
Q 005043 173 VSVWTFDTETEC--WSV-VEAKGDIPVARSGHTVVRASSVLILFGGEDGKRRKLNDLHMFDLKSLT--WLPLHCTGTGPS 247 (717)
Q Consensus 173 ~~v~~yD~~t~~--W~~-l~~~g~~P~~R~~hs~~~~~~~Lyv~GG~~~~~~~~~~v~~yD~~t~~--W~~l~~~g~~P~ 247 (717)
+.++.+|..+++ |+. .......+ .+......+.++.+|+... ...++.+|+++++ |.... ..|.
T Consensus 86 ~~l~~~d~~tG~~~W~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~-------~g~l~~~d~~tG~~~w~~~~---~~~~ 154 (238)
T PF13360_consen 86 GSLYALDAKTGKVLWSIYLTSSPPAG-VRSSSSPAVDGDRLYVGTS-------SGKLVALDPKTGKLLWKYPV---GEPR 154 (238)
T ss_dssp SEEEEEETTTSCEEEEEEE-SSCTCS-TB--SEEEEETTEEEEEET-------CSEEEEEETTTTEEEEEEES---STT-
T ss_pred eeeEecccCCcceeeeeccccccccc-cccccCceEecCEEEEEec-------cCcEEEEecCCCcEEEEeec---CCCC
Confidence 169999988765 984 43211111 2334445555777777643 3568999998775 77643 1211
Q ss_pred CCc-------ccEEEEECCcEEEEEcCCCCCCCCCeEEEEECCCCc--EEEeecCCCCCCCCcceEEEEECCEEEEEecC
Q 005043 248 PRS-------NHVAALYDDKNLLIFGGSSKSKTLNDLYSLDFETMI--WTRIKIRGFHPSPRAGCCGVLCGTKWYIAGGG 318 (717)
Q Consensus 248 ~R~-------~~aa~~~~~~~lyV~GG~~~~~~~ndv~~yd~~t~~--W~~v~~~g~~P~~R~~~sav~~~~~IyV~GG~ 318 (717)
.-. ..+..++.+..+|+..+... +..+|..++. |+.. .. . ........++.+|+.. .
T Consensus 155 ~~~~~~~~~~~~~~~~~~~~~v~~~~~~g~------~~~~d~~tg~~~w~~~-~~-----~-~~~~~~~~~~~l~~~~-~ 220 (238)
T PF13360_consen 155 GSSPISSFSDINGSPVISDGRVYVSSGDGR------VVAVDLATGEKLWSKP-IS-----G-IYSLPSVDGGTLYVTS-S 220 (238)
T ss_dssp SS--EEEETTEEEEEECCTTEEEEECCTSS------EEEEETTTTEEEEEEC-SS-------ECECEECCCTEEEEEE-T
T ss_pred CCcceeeecccccceEEECCEEEEEcCCCe------EEEEECCCCCEEEEec-CC-----C-ccCCceeeCCEEEEEe-C
Confidence 111 11233333335888776542 6677999887 7433 21 1 1112344577787777 3
Q ss_pred CCCCccCeEEEEECCCCc
Q 005043 319 SRKKRHAETLIFDILKGE 336 (717)
Q Consensus 319 ~~~~~~~dv~~yD~~t~~ 336 (717)
+ ..++++|+.+.+
T Consensus 221 ~-----~~l~~~d~~tG~ 233 (238)
T PF13360_consen 221 D-----GRLYALDLKTGK 233 (238)
T ss_dssp T-----TEEEEEETTTTE
T ss_pred C-----CEEEEEECCCCC
Confidence 2 469999999875
No 56
>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL. Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.
Probab=97.29 E-value=0.18 Score=55.59 Aligned_cols=227 Identities=16% Similarity=0.169 Sum_probs=122.4
Q ss_pred eEEEEECCEEEEEcccCCCCCcccEEEEEcCCC--ceEEccccccCCCCCCCCCCCcccceEEEEECCEEEEEeccCCCC
Q 005043 92 HAAAVIGNKMIVVGGESGNGLLDDVQVLNFDRF--SWTAASSKLYLSPSSLPLKIPACRGHSLISWGKKVLLVGGKTDSG 169 (717)
Q Consensus 92 haav~~~~~lyV~GG~~~~~~~~~v~~yd~~t~--~W~~l~~~~~~~~~~~~~~~p~r~~hs~v~~~~~Iyv~GG~~~~~ 169 (717)
.+.++.++++|+.+.. ..++.||+.++ .|+.-... ....+.++.++.+|+.+. +
T Consensus 59 ~~p~v~~~~v~v~~~~------g~v~a~d~~tG~~~W~~~~~~--------------~~~~~p~v~~~~v~v~~~-~--- 114 (377)
T TIGR03300 59 LQPAVAGGKVYAADAD------GTVVALDAETGKRLWRVDLDE--------------RLSGGVGADGGLVFVGTE-K--- 114 (377)
T ss_pred cceEEECCEEEEECCC------CeEEEEEccCCcEeeeecCCC--------------CcccceEEcCCEEEEEcC-C---
Confidence 3445668888877642 25899998776 58764431 111233445777776432 1
Q ss_pred CCceEEEEEECCCCc--EEEeeecCCCCCCceeeEEEEECCEEEEEccccCCCCCcCcEEEEEcCCCc--eEeccCCCCC
Q 005043 170 SDRVSVWTFDTETEC--WSVVEAKGDIPVARSGHTVVRASSVLILFGGEDGKRRKLNDLHMFDLKSLT--WLPLHCTGTG 245 (717)
Q Consensus 170 ~~~~~v~~yD~~t~~--W~~l~~~g~~P~~R~~hs~~~~~~~Lyv~GG~~~~~~~~~~v~~yD~~t~~--W~~l~~~g~~ 245 (717)
..++.+|+.+++ |+... +.. .....+..++.+|+..+ -..++.+|+.+++ |+.-... +.
T Consensus 115 ---g~l~ald~~tG~~~W~~~~-----~~~-~~~~p~v~~~~v~v~~~-------~g~l~a~d~~tG~~~W~~~~~~-~~ 177 (377)
T TIGR03300 115 ---GEVIALDAEDGKELWRAKL-----SSE-VLSPPLVANGLVVVRTN-------DGRLTALDAATGERLWTYSRVT-PA 177 (377)
T ss_pred ---CEEEEEECCCCcEeeeecc-----Cce-eecCCEEECCEEEEECC-------CCeEEEEEcCCCceeeEEccCC-Cc
Confidence 269999987765 87542 111 12233445777777532 2458999998764 8754311 10
Q ss_pred CCCCcccEEEEECCcEEEEEcCCCCCCCCCeEEEEECCCC--cEEEeecCC--CCCCCC---cceEEEEECCEEEEEecC
Q 005043 246 PSPRSNHVAALYDDKNLLIFGGSSKSKTLNDLYSLDFETM--IWTRIKIRG--FHPSPR---AGCCGVLCGTKWYIAGGG 318 (717)
Q Consensus 246 P~~R~~~aa~~~~~~~lyV~GG~~~~~~~ndv~~yd~~t~--~W~~v~~~g--~~P~~R---~~~sav~~~~~IyV~GG~ 318 (717)
...+...+.+..++. + ++|..+ ..++.+|+.++ .|+.-...+ .....+ ...+.+..++.+|+.+.
T Consensus 178 ~~~~~~~sp~~~~~~-v-~~~~~~-----g~v~ald~~tG~~~W~~~~~~~~g~~~~~~~~~~~~~p~~~~~~vy~~~~- 249 (377)
T TIGR03300 178 LTLRGSASPVIADGG-V-LVGFAG-----GKLVALDLQTGQPLWEQRVALPKGRTELERLVDVDGDPVVDGGQVYAVSY- 249 (377)
T ss_pred eeecCCCCCEEECCE-E-EEECCC-----CEEEEEEccCCCEeeeeccccCCCCCchhhhhccCCccEEECCEEEEEEc-
Confidence 011222333444543 4 444432 25899998775 476432110 000001 12233456788888653
Q ss_pred CCCCccCeEEEEECCCC--cEEEeecCCCCCCCCCcceEEEEEEeCCCcEEEEEcCCCCCCCCeEEEEEccCCc
Q 005043 319 SRKKRHAETLIFDILKG--EWSVAITSPSSSVTSNKGFTLVLVQHKEKDFLVAFGGIKKEPSNQVEVLSIEKNE 390 (717)
Q Consensus 319 ~~~~~~~dv~~yD~~t~--~W~~l~~~p~~~~~~r~g~s~v~v~~~~~~~I~v~GG~~~~~~n~v~vyd~~~~e 390 (717)
+ ..+++||+.+. .|+.-. + . ..+.++. ++.||+... ...+.++|..+.+
T Consensus 250 ~-----g~l~a~d~~tG~~~W~~~~--~-----~--~~~p~~~----~~~vyv~~~-----~G~l~~~d~~tG~ 300 (377)
T TIGR03300 250 Q-----GRVAALDLRSGRVLWKRDA--S-----S--YQGPAVD----DNRLYVTDA-----DGVVVALDRRSGS 300 (377)
T ss_pred C-----CEEEEEECCCCcEEEeecc--C-----C--ccCceEe----CCEEEEECC-----CCeEEEEECCCCc
Confidence 1 35899999775 366521 1 0 1112222 567776643 2368888887664
No 57
>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL. Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.
Probab=97.10 E-value=0.28 Score=54.10 Aligned_cols=187 Identities=16% Similarity=0.165 Sum_probs=101.3
Q ss_pred EEEECCEEEEEcccCCCCCcccEEEEEcCCC--ceEEccccccCCCCCCCCCCCcccceEEEEECCEEEEEeccCCCCCC
Q 005043 94 AAVIGNKMIVVGGESGNGLLDDVQVLNFDRF--SWTAASSKLYLSPSSLPLKIPACRGHSLISWGKKVLLVGGKTDSGSD 171 (717)
Q Consensus 94 av~~~~~lyV~GG~~~~~~~~~v~~yd~~t~--~W~~l~~~~~~~~~~~~~~~p~r~~hs~v~~~~~Iyv~GG~~~~~~~ 171 (717)
.++.++.+|+.+. + ..++.+|+.+. .|+..... ....+.+..++.+|+..+.
T Consensus 101 p~v~~~~v~v~~~-~-----g~l~ald~~tG~~~W~~~~~~--------------~~~~~p~v~~~~v~v~~~~------ 154 (377)
T TIGR03300 101 VGADGGLVFVGTE-K-----GEVIALDAEDGKELWRAKLSS--------------EVLSPPLVANGLVVVRTND------ 154 (377)
T ss_pred eEEcCCEEEEEcC-C-----CEEEEEECCCCcEeeeeccCc--------------eeecCCEEECCEEEEECCC------
Confidence 3445677776443 2 26899998775 68764321 0112334457777775431
Q ss_pred ceEEEEEECCCCc--EEEeeecCCCCCCceeeEEEEECCEEEEEccccCCCCCcCcEEEEEcCCC--ceEeccCCCCCCC
Q 005043 172 RVSVWTFDTETEC--WSVVEAKGDIPVARSGHTVVRASSVLILFGGEDGKRRKLNDLHMFDLKSL--TWLPLHCTGTGPS 247 (717)
Q Consensus 172 ~~~v~~yD~~t~~--W~~l~~~g~~P~~R~~hs~~~~~~~Lyv~GG~~~~~~~~~~v~~yD~~t~--~W~~l~~~g~~P~ 247 (717)
..++.+|+.+++ |+....... ...+...+.+..++.+| +|.. -..++.+|+.++ .|+.-. ..|.
T Consensus 155 -g~l~a~d~~tG~~~W~~~~~~~~-~~~~~~~sp~~~~~~v~-~~~~------~g~v~ald~~tG~~~W~~~~---~~~~ 222 (377)
T TIGR03300 155 -GRLTALDAATGERLWTYSRVTPA-LTLRGSASPVIADGGVL-VGFA------GGKLVALDLQTGQPLWEQRV---ALPK 222 (377)
T ss_pred -CeEEEEEcCCCceeeEEccCCCc-eeecCCCCCEEECCEEE-EECC------CCEEEEEEccCCCEeeeecc---ccCC
Confidence 258999998765 875432100 00122233445566554 4322 135889998776 486432 1111
Q ss_pred C-----C---cccEEEEECCcEEEEEcCCCCCCCCCeEEEEECCCCc--EEEeecCCCCCCCCcceEEEEECCEEEEEec
Q 005043 248 P-----R---SNHVAALYDDKNLLIFGGSSKSKTLNDLYSLDFETMI--WTRIKIRGFHPSPRAGCCGVLCGTKWYIAGG 317 (717)
Q Consensus 248 ~-----R---~~~aa~~~~~~~lyV~GG~~~~~~~ndv~~yd~~t~~--W~~v~~~g~~P~~R~~~sav~~~~~IyV~GG 317 (717)
. + ...+.++.+ ..+|+.+.. ..++.||+.++. |+.-. + ...+.+..+++||+...
T Consensus 223 g~~~~~~~~~~~~~p~~~~-~~vy~~~~~------g~l~a~d~~tG~~~W~~~~-----~---~~~~p~~~~~~vyv~~~ 287 (377)
T TIGR03300 223 GRTELERLVDVDGDPVVDG-GQVYAVSYQ------GRVAALDLRSGRVLWKRDA-----S---SYQGPAVDDNRLYVTDA 287 (377)
T ss_pred CCCchhhhhccCCccEEEC-CEEEEEEcC------CEEEEEECCCCcEEEeecc-----C---CccCceEeCCEEEEECC
Confidence 1 1 112223334 437765432 359999997754 65431 1 11233456889998753
Q ss_pred CCCCCccCeEEEEECCCC--cEEE
Q 005043 318 GSRKKRHAETLIFDILKG--EWSV 339 (717)
Q Consensus 318 ~~~~~~~~dv~~yD~~t~--~W~~ 339 (717)
...++++|..+. .|+.
T Consensus 288 ------~G~l~~~d~~tG~~~W~~ 305 (377)
T TIGR03300 288 ------DGVVVALDRRSGSELWKN 305 (377)
T ss_pred ------CCeEEEEECCCCcEEEcc
Confidence 135899999775 4765
No 58
>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A ....
Probab=97.07 E-value=0.43 Score=48.43 Aligned_cols=211 Identities=19% Similarity=0.241 Sum_probs=116.8
Q ss_pred cEEEEEcCCC--ceEEccccccCCCCCCCCCCCcccceE-EEEECCEEEEEeccCCCCCCceEEEEEECCCCc--EEEee
Q 005043 115 DVQVLNFDRF--SWTAASSKLYLSPSSLPLKIPACRGHS-LISWGKKVLLVGGKTDSGSDRVSVWTFDTETEC--WSVVE 189 (717)
Q Consensus 115 ~v~~yd~~t~--~W~~l~~~~~~~~~~~~~~~p~r~~hs-~v~~~~~Iyv~GG~~~~~~~~~~v~~yD~~t~~--W~~l~ 189 (717)
.+..+|+.++ .|+.-.. .......+ .+..++.+|+..+. ..+++||+.+++ |+.-.
T Consensus 4 ~l~~~d~~tG~~~W~~~~~------------~~~~~~~~~~~~~~~~v~~~~~~-------~~l~~~d~~tG~~~W~~~~ 64 (238)
T PF13360_consen 4 TLSALDPRTGKELWSYDLG------------PGIGGPVATAVPDGGRVYVASGD-------GNLYALDAKTGKVLWRFDL 64 (238)
T ss_dssp EEEEEETTTTEEEEEEECS------------SSCSSEEETEEEETTEEEEEETT-------SEEEEEETTTSEEEEEEEC
T ss_pred EEEEEECCCCCEEEEEECC------------CCCCCccceEEEeCCEEEEEcCC-------CEEEEEECCCCCEEEEeec
Confidence 5678888765 6877321 11111222 34478999988432 369999998876 76643
Q ss_pred ecCCCCCCceeeEEEEECCEEEEEccccCCCCCcCcEEEEEcCCCc--eE-eccCCCCCCCCCcccEEEEECCcEEEEEc
Q 005043 190 AKGDIPVARSGHTVVRASSVLILFGGEDGKRRKLNDLHMFDLKSLT--WL-PLHCTGTGPSPRSNHVAALYDDKNLLIFG 266 (717)
Q Consensus 190 ~~g~~P~~R~~hs~~~~~~~Lyv~GG~~~~~~~~~~v~~yD~~t~~--W~-~l~~~g~~P~~R~~~aa~~~~~~~lyV~G 266 (717)
+.+-.. ..+..++.+|+..+ -+.++.||..+++ |+ .....+..+ .+......+. +..+|+..
T Consensus 65 -----~~~~~~-~~~~~~~~v~v~~~-------~~~l~~~d~~tG~~~W~~~~~~~~~~~-~~~~~~~~~~-~~~~~~~~ 129 (238)
T PF13360_consen 65 -----PGPISG-APVVDGGRVYVGTS-------DGSLYALDAKTGKVLWSIYLTSSPPAG-VRSSSSPAVD-GDRLYVGT 129 (238)
T ss_dssp -----SSCGGS-GEEEETTEEEEEET-------TSEEEEEETTTSCEEEEEEE-SSCTCS-TB--SEEEEE-TTEEEEEE
T ss_pred -----cccccc-eeeecccccccccc-------eeeeEecccCCcceeeeeccccccccc-cccccCceEe-cCEEEEEe
Confidence 222111 14677889988751 1379999987764 88 343111111 1223333334 44355544
Q ss_pred CCCCCCCCCeEEEEECCCCc--EEEeecCCCCCCC-------CcceEEEEECCEEEEEecCCCCCccCeEEEEECCCCc-
Q 005043 267 GSSKSKTLNDLYSLDFETMI--WTRIKIRGFHPSP-------RAGCCGVLCGTKWYIAGGGSRKKRHAETLIFDILKGE- 336 (717)
Q Consensus 267 G~~~~~~~ndv~~yd~~t~~--W~~v~~~g~~P~~-------R~~~sav~~~~~IyV~GG~~~~~~~~dv~~yD~~t~~- 336 (717)
. ...++.+|+.++. |+.-... .+.. ......+..++.+|+..+... +..+|..+..
T Consensus 130 ~------~g~l~~~d~~tG~~~w~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~g~------~~~~d~~tg~~ 195 (238)
T PF13360_consen 130 S------SGKLVALDPKTGKLLWKYPVGE--PRGSSPISSFSDINGSPVISDGRVYVSSGDGR------VVAVDLATGEK 195 (238)
T ss_dssp T------CSEEEEEETTTTEEEEEEESST--T-SS--EEEETTEEEEEECCTTEEEEECCTSS------EEEEETTTTEE
T ss_pred c------cCcEEEEecCCCcEEEEeecCC--CCCCcceeeecccccceEEECCEEEEEcCCCe------EEEEECCCCCE
Confidence 2 2469999998765 6654322 1111 112333344678888876432 6667999987
Q ss_pred -EEEeecCCCCCCCCCcceEEEEEEeCCCcEEEEEcCCCCCCCCeEEEEEccCCc
Q 005043 337 -WSVAITSPSSSVTSNKGFTLVLVQHKEKDFLVAFGGIKKEPSNQVEVLSIEKNE 390 (717)
Q Consensus 337 -W~~l~~~p~~~~~~r~g~s~v~v~~~~~~~I~v~GG~~~~~~n~v~vyd~~~~e 390 (717)
|+... . . -.+... ..++.||+.. . ...+.++|+.+.+
T Consensus 196 ~w~~~~----~---~--~~~~~~---~~~~~l~~~~-~----~~~l~~~d~~tG~ 233 (238)
T PF13360_consen 196 LWSKPI----S---G--IYSLPS---VDGGTLYVTS-S----DGRLYALDLKTGK 233 (238)
T ss_dssp EEEECS----S------ECECEE---CCCTEEEEEE-T----TTEEEEEETTTTE
T ss_pred EEEecC----C---C--ccCCce---eeCCEEEEEe-C----CCEEEEEECCCCC
Confidence 74421 1 1 111111 2367777666 2 1389999999886
No 59
>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species. These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....
Probab=97.04 E-value=0.5 Score=48.71 Aligned_cols=222 Identities=12% Similarity=0.057 Sum_probs=119.4
Q ss_pred CCEEEEEcccCCCCCcccEEEEEcCCCceEEccccccCCCCCCCCCCCcccceEEEEE--CCEEEEEeccCCCCCCceEE
Q 005043 98 GNKMIVVGGESGNGLLDDVQVLNFDRFSWTAASSKLYLSPSSLPLKIPACRGHSLISW--GKKVLLVGGKTDSGSDRVSV 175 (717)
Q Consensus 98 ~~~lyV~GG~~~~~~~~~v~~yd~~t~~W~~l~~~~~~~~~~~~~~~p~r~~hs~v~~--~~~Iyv~GG~~~~~~~~~~v 175 (717)
++.||+..-. ...++++|+.+..-..+.. +. ..+++.. ++.+|+.... .+
T Consensus 11 ~g~l~~~D~~-----~~~i~~~~~~~~~~~~~~~-------------~~--~~G~~~~~~~g~l~v~~~~--------~~ 62 (246)
T PF08450_consen 11 DGRLYWVDIP-----GGRIYRVDPDTGEVEVIDL-------------PG--PNGMAFDRPDGRLYVADSG--------GI 62 (246)
T ss_dssp TTEEEEEETT-----TTEEEEEETTTTEEEEEES-------------SS--EEEEEEECTTSEEEEEETT--------CE
T ss_pred CCEEEEEEcC-----CCEEEEEECCCCeEEEEec-------------CC--CceEEEEccCCEEEEEEcC--------ce
Confidence 4778877432 2479999999987665443 11 2344444 6888887653 25
Q ss_pred EEEECCCCcEEEeeec--CCCCCCceeeEEEEECCEEEEEccccCCCCCc--CcEEEEEcCCCceEeccCCCCCCCCCcc
Q 005043 176 WTFDTETECWSVVEAK--GDIPVARSGHTVVRASSVLILFGGEDGKRRKL--NDLHMFDLKSLTWLPLHCTGTGPSPRSN 251 (717)
Q Consensus 176 ~~yD~~t~~W~~l~~~--g~~P~~R~~hs~~~~~~~Lyv~GG~~~~~~~~--~~v~~yD~~t~~W~~l~~~g~~P~~R~~ 251 (717)
.++|+.+++++.+... +..+..+..-.++--++.||+---........ ..++++++. .+...+.. .+.. ..
T Consensus 63 ~~~d~~~g~~~~~~~~~~~~~~~~~~ND~~vd~~G~ly~t~~~~~~~~~~~~g~v~~~~~~-~~~~~~~~--~~~~--pN 137 (246)
T PF08450_consen 63 AVVDPDTGKVTVLADLPDGGVPFNRPNDVAVDPDGNLYVTDSGGGGASGIDPGSVYRIDPD-GKVTVVAD--GLGF--PN 137 (246)
T ss_dssp EEEETTTTEEEEEEEEETTCSCTEEEEEEEE-TTS-EEEEEECCBCTTCGGSEEEEEEETT-SEEEEEEE--EESS--EE
T ss_pred EEEecCCCcEEEEeeccCCCcccCCCceEEEcCCCCEEEEecCCCccccccccceEEECCC-CeEEEEec--Cccc--cc
Confidence 6779999999887753 11134444444444467888753222111112 679999998 66555531 1111 12
Q ss_pred cEEEEE-CCcEEEEEcCCCCCCCCCeEEEEECCC--CcEEEeecCCCCCCCC-cceEEEEE-CCEEEEEecCCCCCccCe
Q 005043 252 HVAALY-DDKNLLIFGGSSKSKTLNDLYSLDFET--MIWTRIKIRGFHPSPR-AGCCGVLC-GTKWYIAGGGSRKKRHAE 326 (717)
Q Consensus 252 ~aa~~~-~~~~lyV~GG~~~~~~~ndv~~yd~~t--~~W~~v~~~g~~P~~R-~~~sav~~-~~~IyV~GG~~~~~~~~d 326 (717)
..+.. +++.||+.-- ..+.|++|++.. ..+.........+... .--++++. ++.|||..-.. ..
T Consensus 138 -Gi~~s~dg~~lyv~ds-----~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~pDG~~vD~~G~l~va~~~~-----~~ 206 (246)
T PF08450_consen 138 -GIAFSPDGKTLYVADS-----FNGRIWRFDLDADGGELSNRRVFIDFPGGPGYPDGLAVDSDGNLWVADWGG-----GR 206 (246)
T ss_dssp -EEEEETTSSEEEEEET-----TTTEEEEEEEETTTCCEEEEEEEEE-SSSSCEEEEEEEBTTS-EEEEEETT-----TE
T ss_pred -ceEECCcchheeeccc-----ccceeEEEeccccccceeeeeeEEEcCCCCcCCCcceEcCCCCEEEEEcCC-----CE
Confidence 33333 4556777432 235699999863 3344222111112221 12234443 68999984311 46
Q ss_pred EEEEECCCCcEEEeecCCCCCCCCCcceEEEEEEeCCCcEEEEE
Q 005043 327 TLIFDILKGEWSVAITSPSSSVTSNKGFTLVLVQHKEKDFLVAF 370 (717)
Q Consensus 327 v~~yD~~t~~W~~l~~~p~~~~~~r~g~s~v~v~~~~~~~I~v~ 370 (717)
|++||+....-..+.. | .. ..+.+++...+.+.|||.
T Consensus 207 I~~~~p~G~~~~~i~~-p----~~--~~t~~~fgg~~~~~L~vT 243 (246)
T PF08450_consen 207 IVVFDPDGKLLREIEL-P----VP--RPTNCAFGGPDGKTLYVT 243 (246)
T ss_dssp EEEEETTSCEEEEEE--S----SS--SEEEEEEESTTSSEEEEE
T ss_pred EEEECCCccEEEEEcC-C----CC--CEEEEEEECCCCCEEEEE
Confidence 9999999766666642 2 11 234445543445566653
No 60
>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein. Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.
Probab=96.94 E-value=0.64 Score=48.24 Aligned_cols=186 Identities=12% Similarity=0.076 Sum_probs=89.5
Q ss_pred EEEEEcccCCCCCcccEEEEEcCCCceEEccccccCCCCCCCCCCCcccceEEEEE--CCEEEEEeccCCCCCCceEEEE
Q 005043 100 KMIVVGGESGNGLLDDVQVLNFDRFSWTAASSKLYLSPSSLPLKIPACRGHSLISW--GKKVLLVGGKTDSGSDRVSVWT 177 (717)
Q Consensus 100 ~lyV~GG~~~~~~~~~v~~yd~~t~~W~~l~~~~~~~~~~~~~~~p~r~~hs~v~~--~~~Iyv~GG~~~~~~~~~~v~~ 177 (717)
++|+.++.++ .+.+||+.++.-...-.. .... .+++.. +..+|+.++.. +.+.+
T Consensus 2 ~~~~s~~~d~-----~v~~~d~~t~~~~~~~~~----------~~~~---~~l~~~~dg~~l~~~~~~~------~~v~~ 57 (300)
T TIGR03866 2 KAYVSNEKDN-----TISVIDTATLEVTRTFPV----------GQRP---RGITLSKDGKLLYVCASDS------DTIQV 57 (300)
T ss_pred cEEEEecCCC-----EEEEEECCCCceEEEEEC----------CCCC---CceEECCCCCEEEEEECCC------CeEEE
Confidence 5677776543 688999887653222110 0111 122222 34577776532 36889
Q ss_pred EECCCCcEEEeeecCCCCCCceeeEEEEE--CCEEEEEccccCCCCCcCcEEEEEcCCCceEeccCCCCCCCCCcccEEE
Q 005043 178 FDTETECWSVVEAKGDIPVARSGHTVVRA--SSVLILFGGEDGKRRKLNDLHMFDLKSLTWLPLHCTGTGPSPRSNHVAA 255 (717)
Q Consensus 178 yD~~t~~W~~l~~~g~~P~~R~~hs~~~~--~~~Lyv~GG~~~~~~~~~~v~~yD~~t~~W~~l~~~g~~P~~R~~~aa~ 255 (717)
||+.+.+....-.. .+.+ ..++.. ++.+|+.++.+ +.+..||+.+..-.. ..+.......++
T Consensus 58 ~d~~~~~~~~~~~~--~~~~---~~~~~~~~g~~l~~~~~~~------~~l~~~d~~~~~~~~-----~~~~~~~~~~~~ 121 (300)
T TIGR03866 58 IDLATGEVIGTLPS--GPDP---ELFALHPNGKILYIANEDD------NLVTVIDIETRKVLA-----EIPVGVEPEGMA 121 (300)
T ss_pred EECCCCcEEEeccC--CCCc---cEEEECCCCCEEEEEcCCC------CeEEEEECCCCeEEe-----EeeCCCCcceEE
Confidence 99988776442211 1111 222332 34566665422 358899998754221 111111122344
Q ss_pred EECCcEEEEEcCCCCCCCCCeEEEEECCCCcEEEeecCCCCCCCCcceEEEEECCEEEEEecCCCCCccCeEEEEECCCC
Q 005043 256 LYDDKNLLIFGGSSKSKTLNDLYSLDFETMIWTRIKIRGFHPSPRAGCCGVLCGTKWYIAGGGSRKKRHAETLIFDILKG 335 (717)
Q Consensus 256 ~~~~~~lyV~GG~~~~~~~ndv~~yd~~t~~W~~v~~~g~~P~~R~~~sav~~~~~IyV~GG~~~~~~~~dv~~yD~~t~ 335 (717)
...+..+++++.... +.++.||..+..-......+ .+..+.+...+++.+++++... ..+.+||+.+.
T Consensus 122 ~~~dg~~l~~~~~~~----~~~~~~d~~~~~~~~~~~~~----~~~~~~~~s~dg~~l~~~~~~~----~~v~i~d~~~~ 189 (300)
T TIGR03866 122 VSPDGKIVVNTSETT----NMAHFIDTKTYEIVDNVLVD----QRPRFAEFTADGKELWVSSEIG----GTVSVIDVATR 189 (300)
T ss_pred ECCCCCEEEEEecCC----CeEEEEeCCCCeEEEEEEcC----CCccEEEECCCCCEEEEEcCCC----CEEEEEEcCcc
Confidence 443333555554322 24667787765432211111 1112222233555444444322 35889999876
Q ss_pred cE
Q 005043 336 EW 337 (717)
Q Consensus 336 ~W 337 (717)
+.
T Consensus 190 ~~ 191 (300)
T TIGR03866 190 KV 191 (300)
T ss_pred ee
Confidence 54
No 61
>PRK13684 Ycf48-like protein; Provisional
Probab=96.92 E-value=0.52 Score=51.41 Aligned_cols=244 Identities=13% Similarity=0.157 Sum_probs=121.3
Q ss_pred CCCCeEEeeecCCCCCCcc-eeEEEEECCEEEEEcccCCCCCcccEEEEEcCCCceEEccccccCCCCCCCCCCCcccce
Q 005043 72 NSENWMVLSIAGDKPIPRF-NHAAAVIGNKMIVVGGESGNGLLDDVQVLNFDRFSWTAASSKLYLSPSSLPLKIPACRGH 150 (717)
Q Consensus 72 ~s~~W~~l~~~g~~P~~R~-~haav~~~~~lyV~GG~~~~~~~~~v~~yd~~t~~W~~l~~~~~~~~~~~~~~~p~r~~h 150 (717)
....|+.+... .|.... ..+....++..|+.|.. ..+++=.=...+|+.+... ...+.. .+
T Consensus 74 gG~tW~~~~~~--~~~~~~~l~~v~~~~~~~~~~G~~------g~i~~S~DgG~tW~~~~~~---------~~~~~~-~~ 135 (334)
T PRK13684 74 GGETWEERSLD--LPEENFRLISISFKGDEGWIVGQP------SLLLHTTDGGKNWTRIPLS---------EKLPGS-PY 135 (334)
T ss_pred CCCCceECccC--CcccccceeeeEEcCCcEEEeCCC------ceEEEECCCCCCCeEccCC---------cCCCCC-ce
Confidence 35689987532 222222 22333345556766532 1233322223599988631 011111 12
Q ss_pred EEEEE-CCEEEEEeccCCCCCCceEEEEEECCCCcEEEeeecCCCCCCceeeEEEEECCEEEEEccccCCCCCcCcEEE-
Q 005043 151 SLISW-GKKVLLVGGKTDSGSDRVSVWTFDTETECWSVVEAKGDIPVARSGHTVVRASSVLILFGGEDGKRRKLNDLHM- 228 (717)
Q Consensus 151 s~v~~-~~~Iyv~GG~~~~~~~~~~v~~yD~~t~~W~~l~~~g~~P~~R~~hs~~~~~~~Lyv~GG~~~~~~~~~~v~~- 228 (717)
.+..+ ++.+|+.|... .+++-+-.-.+|+.+.. +..-..+.+....+..|+..|..+ .++.
T Consensus 136 ~i~~~~~~~~~~~g~~G-------~i~~S~DgG~tW~~~~~----~~~g~~~~i~~~~~g~~v~~g~~G------~i~~s 198 (334)
T PRK13684 136 LITALGPGTAEMATNVG-------AIYRTTDGGKNWEALVE----DAAGVVRNLRRSPDGKYVAVSSRG------NFYST 198 (334)
T ss_pred EEEEECCCcceeeeccc-------eEEEECCCCCCceeCcC----CCcceEEEEEECCCCeEEEEeCCc------eEEEE
Confidence 23333 45566665432 46766666789998763 323344455555444444444332 2333
Q ss_pred EEcCCCceEeccCCCCCCCCCcccEEEEECCcEEEEEcCCCCCCCCCeEEEE--ECCCCcEEEeecCCCCCCCCcceEEE
Q 005043 229 FDLKSLTWLPLHCTGTGPSPRSNHVAALYDDKNLLIFGGSSKSKTLNDLYSL--DFETMIWTRIKIRGFHPSPRAGCCGV 306 (717)
Q Consensus 229 yD~~t~~W~~l~~~g~~P~~R~~~aa~~~~~~~lyV~GG~~~~~~~ndv~~y--d~~t~~W~~v~~~g~~P~~R~~~sav 306 (717)
.|....+|+.+. .+..+...+++...+..++++|... ..++ +-...+|+.+... ........++++
T Consensus 199 ~~~gg~tW~~~~----~~~~~~l~~i~~~~~g~~~~vg~~G-------~~~~~s~d~G~sW~~~~~~-~~~~~~~l~~v~ 266 (334)
T PRK13684 199 WEPGQTAWTPHQ----RNSSRRLQSMGFQPDGNLWMLARGG-------QIRFNDPDDLESWSKPIIP-EITNGYGYLDLA 266 (334)
T ss_pred cCCCCCeEEEee----CCCcccceeeeEcCCCCEEEEecCC-------EEEEccCCCCCccccccCC-ccccccceeeEE
Confidence 244456799874 3444555555555555478877543 2334 2334689976431 000111223333
Q ss_pred EE-CCEEEEEecCCCCCccCeEEEEECCCCcEEEeecCCCCCCCCCcceEEEEEEeCCCcEEEEEcCCC
Q 005043 307 LC-GTKWYIAGGGSRKKRHAETLIFDILKGEWSVAITSPSSSVTSNKGFTLVLVQHKEKDFLVAFGGIK 374 (717)
Q Consensus 307 ~~-~~~IyV~GG~~~~~~~~dv~~yD~~t~~W~~l~~~p~~~~~~r~g~s~v~v~~~~~~~I~v~GG~~ 374 (717)
.. ++.+|++|... .++.-.....+|+.+.... . .+...+.++... ++..|+.|..+
T Consensus 267 ~~~~~~~~~~G~~G------~v~~S~d~G~tW~~~~~~~-~--~~~~~~~~~~~~---~~~~~~~G~~G 323 (334)
T PRK13684 267 YRTPGEIWAGGGNG------TLLVSKDGGKTWEKDPVGE-E--VPSNFYKIVFLD---PEKGFVLGQRG 323 (334)
T ss_pred EcCCCCEEEEcCCC------eEEEeCCCCCCCeECCcCC-C--CCcceEEEEEeC---CCceEEECCCc
Confidence 33 56788887632 2444444567999864211 1 122334444443 56678877753
No 62
>PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A.
Probab=96.61 E-value=1.4 Score=47.40 Aligned_cols=244 Identities=16% Similarity=0.165 Sum_probs=112.8
Q ss_pred CCCCeEEeeecCCCCCCcceeEEEEEC-CEEEEEcccCCCCCcccEEEEEcCCCceEEccccccCCCCCCCCCCC-cccc
Q 005043 72 NSENWMVLSIAGDKPIPRFNHAAAVIG-NKMIVVGGESGNGLLDDVQVLNFDRFSWTAASSKLYLSPSSLPLKIP-ACRG 149 (717)
Q Consensus 72 ~s~~W~~l~~~g~~P~~R~~haav~~~-~~lyV~GG~~~~~~~~~v~~yd~~t~~W~~l~~~~~~~~~~~~~~~p-~r~~ 149 (717)
....|+.+. .|....-....+++ ++-|++|-.. .++.=+=...+|...... ...+ ....
T Consensus 4 ~~~~W~~v~----l~t~~~l~dV~F~d~~~G~~VG~~g------~il~T~DGG~tW~~~~~~---------~~~~~~~~l 64 (302)
T PF14870_consen 4 SGNSWQQVS----LPTDKPLLDVAFVDPNHGWAVGAYG------TILKTTDGGKTWQPVSLD---------LDNPFDYHL 64 (302)
T ss_dssp SS--EEEEE-----S-SS-EEEEEESSSS-EEEEETTT------EEEEESSTTSS-EE--------------S-----EE
T ss_pred cCCCcEEee----cCCCCceEEEEEecCCEEEEEecCC------EEEEECCCCccccccccC---------CCccceeeE
Confidence 567899996 45545555555554 7788887432 222222223589988642 1111 2223
Q ss_pred eEEEEECCEEEEEeccCCCCCCceEEEEEECCCCcEEEeeecCCCCCCceeeEEEE-ECCEEEEEccccCCCCCcCcEEE
Q 005043 150 HSLISWGKKVLLVGGKTDSGSDRVSVWTFDTETECWSVVEAKGDIPVARSGHTVVR-ASSVLILFGGEDGKRRKLNDLHM 228 (717)
Q Consensus 150 hs~v~~~~~Iyv~GG~~~~~~~~~~v~~yD~~t~~W~~l~~~g~~P~~R~~hs~~~-~~~~Lyv~GG~~~~~~~~~~v~~ 228 (717)
.++...++..|+.|-.. -++.-.-...+|+.++....+| -..+.+.. -++.++++|.. ..+|+
T Consensus 65 ~~I~f~~~~g~ivG~~g-------~ll~T~DgG~tW~~v~l~~~lp--gs~~~i~~l~~~~~~l~~~~-------G~iy~ 128 (302)
T PF14870_consen 65 NSISFDGNEGWIVGEPG-------LLLHTTDGGKTWERVPLSSKLP--GSPFGITALGDGSAELAGDR-------GAIYR 128 (302)
T ss_dssp EEEEEETTEEEEEEETT-------EEEEESSTTSS-EE----TT-S--S-EEEEEEEETTEEEEEETT---------EEE
T ss_pred EEEEecCCceEEEcCCc-------eEEEecCCCCCcEEeecCCCCC--CCeeEEEEcCCCcEEEEcCC-------CcEEE
Confidence 44555688899887531 2455445567899987422233 33344444 35677777532 34666
Q ss_pred EEcCCCceEeccCCCCCCCCCcccEEEEECCcEEEEEcCCCCCCCCCeEEEEECCCCcEEEeecCCCCCCCCcceEEEEE
Q 005043 229 FDLKSLTWLPLHCTGTGPSPRSNHVAALYDDKNLLIFGGSSKSKTLNDLYSLDFETMIWTRIKIRGFHPSPRAGCCGVLC 308 (717)
Q Consensus 229 yD~~t~~W~~l~~~g~~P~~R~~~aa~~~~~~~lyV~GG~~~~~~~ndv~~yd~~t~~W~~v~~~g~~P~~R~~~sav~~ 308 (717)
-.-.-.+|+.+.. +.......+....+..+++++..+. -...+|+....|..... +..|.-.++...
T Consensus 129 T~DgG~tW~~~~~----~~~gs~~~~~r~~dG~~vavs~~G~-----~~~s~~~G~~~w~~~~r----~~~~riq~~gf~ 195 (302)
T PF14870_consen 129 TTDGGKTWQAVVS----ETSGSINDITRSSDGRYVAVSSRGN-----FYSSWDPGQTTWQPHNR----NSSRRIQSMGFS 195 (302)
T ss_dssp ESSTTSSEEEEE-----S----EEEEEE-TTS-EEEEETTSS-----EEEEE-TT-SS-EEEE------SSS-EEEEEE-
T ss_pred eCCCCCCeeEccc----CCcceeEeEEECCCCcEEEEECccc-----EEEEecCCCccceEEcc----Cccceehhceec
Confidence 5556678998752 1122222334445554555554332 13466888888998865 345555555444
Q ss_pred -CCEEEEEecCCCCCccCeEEEEE--CCCCcEEEeecCCCCCCCCCcceEEEEEEeCCCcEEEEEcCCC
Q 005043 309 -GTKWYIAGGGSRKKRHAETLIFD--ILKGEWSVAITSPSSSVTSNKGFTLVLVQHKEKDFLVAFGGIK 374 (717)
Q Consensus 309 -~~~IyV~GG~~~~~~~~dv~~yD--~~t~~W~~l~~~p~~~~~~r~g~s~v~v~~~~~~~I~v~GG~~ 374 (717)
++.++++. ..+ .+++-+ ....+|.... .|....++...-+....++.+++.||.+
T Consensus 196 ~~~~lw~~~-~Gg-----~~~~s~~~~~~~~w~~~~-----~~~~~~~~~~ld~a~~~~~~~wa~gg~G 253 (302)
T PF14870_consen 196 PDGNLWMLA-RGG-----QIQFSDDPDDGETWSEPI-----IPIKTNGYGILDLAYRPPNEIWAVGGSG 253 (302)
T ss_dssp TTS-EEEEE-TTT-----EEEEEE-TTEEEEE---B------TTSS--S-EEEEEESSSS-EEEEESTT
T ss_pred CCCCEEEEe-CCc-----EEEEccCCCCcccccccc-----CCcccCceeeEEEEecCCCCEEEEeCCc
Confidence 67777766 222 355555 3456788732 2223445554444445578899999964
No 63
>PRK04792 tolB translocation protein TolB; Provisional
Probab=96.56 E-value=1.5 Score=49.75 Aligned_cols=148 Identities=12% Similarity=0.127 Sum_probs=81.6
Q ss_pred eEEEEEECCCCcEEEeeecCCCCCCceeeEEEEECCEEEEEccccCCCCCcCcEEEEEcCCCceEeccCCCCCCCCCccc
Q 005043 173 VSVWTFDTETECWSVVEAKGDIPVARSGHTVVRASSVLILFGGEDGKRRKLNDLHMFDLKSLTWLPLHCTGTGPSPRSNH 252 (717)
Q Consensus 173 ~~v~~yD~~t~~W~~l~~~g~~P~~R~~hs~~~~~~~Lyv~GG~~~~~~~~~~v~~yD~~t~~W~~l~~~g~~P~~R~~~ 252 (717)
..+|++|+.+++-+.+.. .+.........-.+..|++....++ ..++|.+|+.+++.+.+... . .....
T Consensus 242 ~~L~~~dl~tg~~~~lt~---~~g~~~~~~wSPDG~~La~~~~~~g----~~~Iy~~dl~tg~~~~lt~~---~-~~~~~ 310 (448)
T PRK04792 242 AEIFVQDIYTQVREKVTS---FPGINGAPRFSPDGKKLALVLSKDG----QPEIYVVDIATKALTRITRH---R-AIDTE 310 (448)
T ss_pred cEEEEEECCCCCeEEecC---CCCCcCCeeECCCCCEEEEEEeCCC----CeEEEEEECCCCCeEECccC---C-CCccc
Confidence 479999999887766652 2211111111112345655543222 25799999999988877521 1 11111
Q ss_pred EEEEECCcEEEEEcCCCCCCCCCeEEEEECCCCcEEEeecCCCCCCCCcceEEEEEC-CEEEEEecCCCCCccCeEEEEE
Q 005043 253 VAALYDDKNLLIFGGSSKSKTLNDLYSLDFETMIWTRIKIRGFHPSPRAGCCGVLCG-TKWYIAGGGSRKKRHAETLIFD 331 (717)
Q Consensus 253 aa~~~~~~~lyV~GG~~~~~~~ndv~~yd~~t~~W~~v~~~g~~P~~R~~~sav~~~-~~IyV~GG~~~~~~~~dv~~yD 331 (717)
....-+++.|++.....+ ..++|.+|+.++.++.+...+.. .......-+ +.|++.+. ... ...++.+|
T Consensus 311 p~wSpDG~~I~f~s~~~g---~~~Iy~~dl~~g~~~~Lt~~g~~----~~~~~~SpDG~~l~~~~~-~~g--~~~I~~~d 380 (448)
T PRK04792 311 PSWHPDGKSLIFTSERGG---KPQIYRVNLASGKVSRLTFEGEQ----NLGGSITPDGRSMIMVNR-TNG--KFNIARQD 380 (448)
T ss_pred eEECCCCCEEEEEECCCC---CceEEEEECCCCCEEEEecCCCC----CcCeeECCCCCEEEEEEe-cCC--ceEEEEEE
Confidence 222235554554433222 25799999999999888643211 111122224 45555443 222 24789999
Q ss_pred CCCCcEEEee
Q 005043 332 ILKGEWSVAI 341 (717)
Q Consensus 332 ~~t~~W~~l~ 341 (717)
+.+...+.+.
T Consensus 381 l~~g~~~~lt 390 (448)
T PRK04792 381 LETGAMQVLT 390 (448)
T ss_pred CCCCCeEEcc
Confidence 9998887764
No 64
>PF07893 DUF1668: Protein of unknown function (DUF1668); InterPro: IPR012871 The hypothetical proteins found in this family are expressed by Oryza sativa (Rice) and are of unknown function.
Probab=96.11 E-value=0.66 Score=50.77 Aligned_cols=120 Identities=18% Similarity=0.227 Sum_probs=77.2
Q ss_pred ECCEEEEEeccCCCCCCceEEEEEECCCCcEEEeeecCCCCCCceeeEEEEECCEEEEEccccCCCCCc----CcEEEE-
Q 005043 155 WGKKVLLVGGKTDSGSDRVSVWTFDTETECWSVVEAKGDIPVARSGHTVVRASSVLILFGGEDGKRRKL----NDLHMF- 229 (717)
Q Consensus 155 ~~~~Iyv~GG~~~~~~~~~~v~~yD~~t~~W~~l~~~g~~P~~R~~hs~~~~~~~Lyv~GG~~~~~~~~----~~v~~y- 229 (717)
.+++|+.++... .+.+||+.|..-...+ .++.+.....++.++++||++.......... ..++.+
T Consensus 75 ~gskIv~~d~~~-------~t~vyDt~t~av~~~P---~l~~pk~~pisv~VG~~LY~m~~~~~~~~~~~~~~~~FE~l~ 144 (342)
T PF07893_consen 75 HGSKIVAVDQSG-------RTLVYDTDTRAVATGP---RLHSPKRCPISVSVGDKLYAMDRSPFPEPAGRPDFPCFEALV 144 (342)
T ss_pred cCCeEEEEcCCC-------CeEEEECCCCeEeccC---CCCCCCcceEEEEeCCeEEEeeccCccccccCccceeEEEec
Confidence 589999996651 3889999999877665 3555556667777899999998875432110 144444
Q ss_pred -E--------cCCCceEeccCCCCCCCCCc-------ccEEEEECCcEEEE-EcCCCCCCCCCeEEEEECCCCcEEEeec
Q 005043 230 -D--------LKSLTWLPLHCTGTGPSPRS-------NHVAALYDDKNLLI-FGGSSKSKTLNDLYSLDFETMIWTRIKI 292 (717)
Q Consensus 230 -D--------~~t~~W~~l~~~g~~P~~R~-------~~aa~~~~~~~lyV-~GG~~~~~~~ndv~~yd~~t~~W~~v~~ 292 (717)
+ .....|..++ +.|..+. -.+-+++++..|+| .-|.. .-.|.||..+.+|+.+..
T Consensus 145 ~~~~~~~~~~~~~w~W~~LP---~PPf~~~~~~~~~~i~sYavv~g~~I~vS~~~~~-----~GTysfDt~~~~W~~~Gd 216 (342)
T PF07893_consen 145 YRPPPDDPSPEESWSWRSLP---PPPFVRDRRYSDYRITSYAVVDGRTIFVSVNGRR-----WGTYSFDTESHEWRKHGD 216 (342)
T ss_pred cccccccccCCCcceEEcCC---CCCccccCCcccceEEEEEEecCCeEEEEecCCc-----eEEEEEEcCCcceeeccc
Confidence 3 2233577775 3333332 22334456666777 43321 238999999999999965
No 65
>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB. The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.
Probab=96.08 E-value=3.2 Score=46.16 Aligned_cols=148 Identities=16% Similarity=0.104 Sum_probs=81.1
Q ss_pred eEEEEEECCCCcEEEeeecCCCCCCceeeEEEEECCEEEEEccccCCCCCcCcEEEEEcCCCceEeccCCCCCCCCCccc
Q 005043 173 VSVWTFDTETECWSVVEAKGDIPVARSGHTVVRASSVLILFGGEDGKRRKLNDLHMFDLKSLTWLPLHCTGTGPSPRSNH 252 (717)
Q Consensus 173 ~~v~~yD~~t~~W~~l~~~g~~P~~R~~hs~~~~~~~Lyv~GG~~~~~~~~~~v~~yD~~t~~W~~l~~~g~~P~~R~~~ 252 (717)
..+++||+.++....+.. .+......+....+..|++....++ ..++|.+|+.+.....+... +... ..
T Consensus 214 ~~i~v~d~~~g~~~~~~~---~~~~~~~~~~spDg~~l~~~~~~~~----~~~i~~~d~~~~~~~~l~~~---~~~~-~~ 282 (417)
T TIGR02800 214 PEIYVQDLATGQREKVAS---FPGMNGAPAFSPDGSKLAVSLSKDG----NPDIYVMDLDGKQLTRLTNG---PGID-TE 282 (417)
T ss_pred cEEEEEECCCCCEEEeec---CCCCccceEECCCCCEEEEEECCCC----CccEEEEECCCCCEEECCCC---CCCC-CC
Confidence 479999999887666552 2222222111112335655433222 25799999998887777521 1111 11
Q ss_pred EEEEECCcEEEEEcCCCCCCCCCeEEEEECCCCcEEEeecCCCCCCCCcceEEE-EECCEEEEEecCCCCCccCeEEEEE
Q 005043 253 VAALYDDKNLLIFGGSSKSKTLNDLYSLDFETMIWTRIKIRGFHPSPRAGCCGV-LCGTKWYIAGGGSRKKRHAETLIFD 331 (717)
Q Consensus 253 aa~~~~~~~lyV~GG~~~~~~~ndv~~yd~~t~~W~~v~~~g~~P~~R~~~sav-~~~~~IyV~GG~~~~~~~~dv~~yD 331 (717)
....-+++.|++.....+ ...+|.+|+.+..+..+...+ ....... .-+++.+++..... ....++.+|
T Consensus 283 ~~~s~dg~~l~~~s~~~g---~~~iy~~d~~~~~~~~l~~~~-----~~~~~~~~spdg~~i~~~~~~~--~~~~i~~~d 352 (417)
T TIGR02800 283 PSWSPDGKSIAFTSDRGG---SPQIYMMDADGGEVRRLTFRG-----GYNASPSWSPDGDLIAFVHREG--GGFNIAVMD 352 (417)
T ss_pred EEECCCCCEEEEEECCCC---CceEEEEECCCCCEEEeecCC-----CCccCeEECCCCCEEEEEEccC--CceEEEEEe
Confidence 122224554544433222 247999999998888776431 1122222 22555555554432 234799999
Q ss_pred CCCCcEEEee
Q 005043 332 ILKGEWSVAI 341 (717)
Q Consensus 332 ~~t~~W~~l~ 341 (717)
+.+..++.+.
T Consensus 353 ~~~~~~~~l~ 362 (417)
T TIGR02800 353 LDGGGERVLT 362 (417)
T ss_pred CCCCCeEEcc
Confidence 9987777664
No 66
>PF12768 Rax2: Cortical protein marker for cell polarity
Probab=96.01 E-value=0.2 Score=53.15 Aligned_cols=123 Identities=16% Similarity=0.291 Sum_probs=73.9
Q ss_pred EEccc-cCCCC-CcCcEEEEEcCCCceEeccCCCCCCCCCcccEEEEECCcEEEEEcCCCCCC-CCCeEEEEECCCCcEE
Q 005043 212 LFGGE-DGKRR-KLNDLHMFDLKSLTWLPLHCTGTGPSPRSNHVAALYDDKNLLIFGGSSKSK-TLNDLYSLDFETMIWT 288 (717)
Q Consensus 212 v~GG~-~~~~~-~~~~v~~yD~~t~~W~~l~~~g~~P~~R~~~aa~~~~~~~lyV~GG~~~~~-~~ndv~~yd~~t~~W~ 288 (717)
++||. ...+. .+..+-.||+.+.+|..+.. - ..-.-..+...++..||+.|-..... ....+-.||.++.+|+
T Consensus 2 ~VGG~F~~aGsL~C~~lC~yd~~~~qW~~~g~---~-i~G~V~~l~~~~~~~Llv~G~ft~~~~~~~~la~yd~~~~~w~ 77 (281)
T PF12768_consen 2 YVGGSFTSAGSLPCPGLCLYDTDNSQWSSPGN---G-ISGTVTDLQWASNNQLLVGGNFTLNGTNSSNLATYDFKNQTWS 77 (281)
T ss_pred EEeeecCCCCCcCCCEEEEEECCCCEeecCCC---C-ceEEEEEEEEecCCEEEEEEeeEECCCCceeEEEEecCCCeee
Confidence 45554 33332 47789999999999998852 1 11122333444555577777554333 4566999999999999
Q ss_pred EeecC--CCCCCCCcceEEEEE-CCEEEEEecCCCCCccCeEEEEECCCCcEEEeec
Q 005043 289 RIKIR--GFHPSPRAGCCGVLC-GTKWYIAGGGSRKKRHAETLIFDILKGEWSVAIT 342 (717)
Q Consensus 289 ~v~~~--g~~P~~R~~~sav~~-~~~IyV~GG~~~~~~~~dv~~yD~~t~~W~~l~~ 342 (717)
.+... ...|.+-........ ...+++.|... ....-+..| +..+|..+..
T Consensus 78 ~~~~~~s~~ipgpv~a~~~~~~d~~~~~~aG~~~--~g~~~l~~~--dGs~W~~i~~ 130 (281)
T PF12768_consen 78 SLGGGSSNSIPGPVTALTFISNDGSNFWVAGRSA--NGSTFLMKY--DGSSWSSIGS 130 (281)
T ss_pred ecCCcccccCCCcEEEEEeeccCCceEEEeceec--CCCceEEEE--cCCceEeccc
Confidence 98762 134444322222222 35677777752 222345556 5678999874
No 67
>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=96.00 E-value=0.7 Score=51.19 Aligned_cols=216 Identities=19% Similarity=0.246 Sum_probs=113.2
Q ss_pred ECCEEEEEcccCCCCCcccEEEEEcCCCc-eEEccccccCCCCCCCCCCCcccceEEEEECCEEEEEeccCCCCCCceEE
Q 005043 97 IGNKMIVVGGESGNGLLDDVQVLNFDRFS-WTAASSKLYLSPSSLPLKIPACRGHSLISWGKKVLLVGGKTDSGSDRVSV 175 (717)
Q Consensus 97 ~~~~lyV~GG~~~~~~~~~v~~yd~~t~~-W~~l~~~~~~~~~~~~~~~p~r~~hs~v~~~~~Iyv~GG~~~~~~~~~~v 175 (717)
-+|+++..|+.++. |.+||..+.. -+.+.. ...| -..--....++.++++|+-+. .+
T Consensus 78 ~DG~LlaaGD~sG~-----V~vfD~k~r~iLR~~~a----------h~ap-v~~~~f~~~d~t~l~s~sDd~------v~ 135 (487)
T KOG0310|consen 78 SDGRLLAAGDESGH-----VKVFDMKSRVILRQLYA----------HQAP-VHVTKFSPQDNTMLVSGSDDK------VV 135 (487)
T ss_pred cCCeEEEccCCcCc-----EEEeccccHHHHHHHhh----------ccCc-eeEEEecccCCeEEEecCCCc------eE
Confidence 37999999997764 8899955521 111111 0011 111223445889999987431 24
Q ss_pred EEEECCCCcEEEeeecCCCCCCceeeEEEEECCEEEEEccccCCCCCcCcEEEEEcCCC-ceEeccCCCCCCCCCcccEE
Q 005043 176 WTFDTETECWSVVEAKGDIPVARSGHTVVRASSVLILFGGEDGKRRKLNDLHMFDLKSL-TWLPLHCTGTGPSPRSNHVA 254 (717)
Q Consensus 176 ~~yD~~t~~W~~l~~~g~~P~~R~~hs~~~~~~~Lyv~GG~~~~~~~~~~v~~yD~~t~-~W~~l~~~g~~P~~R~~~aa 254 (717)
-.+|..+..- .....+.--.-|++ ++...++.|++-||+++. +-.||..+. .|..- ..-..|.. .+
T Consensus 136 k~~d~s~a~v-~~~l~~htDYVR~g-~~~~~~~hivvtGsYDg~------vrl~DtR~~~~~v~e-lnhg~pVe----~v 202 (487)
T KOG0310|consen 136 KYWDLSTAYV-QAELSGHTDYVRCG-DISPANDHIVVTGSYDGK------VRLWDTRSLTSRVVE-LNHGCPVE----SV 202 (487)
T ss_pred EEEEcCCcEE-EEEecCCcceeEee-ccccCCCeEEEecCCCce------EEEEEeccCCceeEE-ecCCCcee----eE
Confidence 4556655543 33332222222332 333456789999999865 667888776 44321 11122222 24
Q ss_pred EEECC-cEEEEEcCCCCCCCCCeEEEEECCCCcEEEeecCCCCCCCCcce-----EEEEE-CCEEEEEecCCCCCccCeE
Q 005043 255 ALYDD-KNLLIFGGSSKSKTLNDLYSLDFETMIWTRIKIRGFHPSPRAGC-----CGVLC-GTKWYIAGGGSRKKRHAET 327 (717)
Q Consensus 255 ~~~~~-~~lyV~GG~~~~~~~ndv~~yd~~t~~W~~v~~~g~~P~~R~~~-----sav~~-~~~IyV~GG~~~~~~~~dv 327 (717)
+.+.+ ..|...|| |.+-+||+.++.= .+..+..| ++... ++.-++.||.++. +
T Consensus 203 l~lpsgs~iasAgG-------n~vkVWDl~~G~q--------ll~~~~~H~KtVTcL~l~s~~~rLlS~sLD~~-----V 262 (487)
T KOG0310|consen 203 LALPSGSLIASAGG-------NSVKVWDLTTGGQ--------LLTSMFNHNKTVTCLRLASDSTRLLSGSLDRH-----V 262 (487)
T ss_pred EEcCCCCEEEEcCC-------CeEEEEEecCCce--------ehhhhhcccceEEEEEeecCCceEeecccccc-----e
Confidence 44544 44555555 4588888765421 12222212 22222 4577778887755 7
Q ss_pred EEEECCCCcEEEeecCCCCCCCCCcceEEEEEEeCCCcEEEEEcCCCCC
Q 005043 328 LIFDILKGEWSVAITSPSSSVTSNKGFTLVLVQHKEKDFLVAFGGIKKE 376 (717)
Q Consensus 328 ~~yD~~t~~W~~l~~~p~~~~~~r~g~s~v~v~~~~~~~I~v~GG~~~~ 376 (717)
-+||. ..|+.+-.. ..|.+. .++.+.. ++.-+++|+.++-
T Consensus 263 KVfd~--t~~Kvv~s~--~~~~pv--Lsiavs~---dd~t~viGmsnGl 302 (487)
T KOG0310|consen 263 KVFDT--TNYKVVHSW--KYPGPV--LSIAVSP---DDQTVVIGMSNGL 302 (487)
T ss_pred EEEEc--cceEEEEee--ecccce--eeEEecC---CCceEEEecccce
Confidence 88984 446665422 111222 2333332 5566778887654
No 68
>KOG0161 consensus Myosin class II heavy chain [Cytoskeleton]
Probab=96.00 E-value=0.014 Score=75.11 Aligned_cols=21 Identities=48% Similarity=0.638 Sum_probs=8.0
Q ss_pred HHHHHHHHHHHHHHHHHhhhh
Q 005043 615 KKLADSLKEMELLKEKLAGLE 635 (717)
Q Consensus 615 ~~~~~~~~~~~~l~~~~~~~~ 635 (717)
+|++.+..|+|.|++++++++
T Consensus 1667 rr~~~l~~E~eeL~~~l~~~~ 1687 (1930)
T KOG0161|consen 1667 RRLAALQAELEELREKLEALE 1687 (1930)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 333333333333333333333
No 69
>PF12768 Rax2: Cortical protein marker for cell polarity
Probab=95.92 E-value=0.11 Score=54.95 Aligned_cols=114 Identities=20% Similarity=0.284 Sum_probs=72.0
Q ss_pred CceEEEEEECCCCcEEEeeecCCCCCCceeeEEEEE-CCEEEEEccccCCCCCcCcEEEEEcCCCceEeccCC--CCCCC
Q 005043 171 DRVSVWTFDTETECWSVVEAKGDIPVARSGHTVVRA-SSVLILFGGEDGKRRKLNDLHMFDLKSLTWLPLHCT--GTGPS 247 (717)
Q Consensus 171 ~~~~v~~yD~~t~~W~~l~~~g~~P~~R~~hs~~~~-~~~Lyv~GG~~~~~~~~~~v~~yD~~t~~W~~l~~~--g~~P~ 247 (717)
....+..||+.+.+|..+.. . ..-.-..+... ++.||+.|-....+.....+-.||.++.+|+.+... ..+|.
T Consensus 14 ~C~~lC~yd~~~~qW~~~g~--~--i~G~V~~l~~~~~~~Llv~G~ft~~~~~~~~la~yd~~~~~w~~~~~~~s~~ipg 89 (281)
T PF12768_consen 14 PCPGLCLYDTDNSQWSSPGN--G--ISGTVTDLQWASNNQLLVGGNFTLNGTNSSNLATYDFKNQTWSSLGGGSSNSIPG 89 (281)
T ss_pred CCCEEEEEECCCCEeecCCC--C--ceEEEEEEEEecCCEEEEEEeeEECCCCceeEEEEecCCCeeeecCCcccccCCC
Confidence 45679999999999998753 1 11122333334 567888776555443456789999999999988641 24565
Q ss_pred CCcccEEEEECCcEEEEEcCCCCCCCCCeEEEEECCCCcEEEeec
Q 005043 248 PRSNHVAALYDDKNLLIFGGSSKSKTLNDLYSLDFETMIWTRIKI 292 (717)
Q Consensus 248 ~R~~~aa~~~~~~~lyV~GG~~~~~~~ndv~~yd~~t~~W~~v~~ 292 (717)
+.........+...+++.|.... -..-+..|| ..+|+.+..
T Consensus 90 pv~a~~~~~~d~~~~~~aG~~~~--g~~~l~~~d--Gs~W~~i~~ 130 (281)
T PF12768_consen 90 PVTALTFISNDGSNFWVAGRSAN--GSTFLMKYD--GSSWSSIGS 130 (281)
T ss_pred cEEEEEeeccCCceEEEeceecC--CCceEEEEc--CCceEeccc
Confidence 54333333334445777776522 233466665 789999865
No 70
>PF07893 DUF1668: Protein of unknown function (DUF1668); InterPro: IPR012871 The hypothetical proteins found in this family are expressed by Oryza sativa (Rice) and are of unknown function.
Probab=95.88 E-value=0.24 Score=54.24 Aligned_cols=118 Identities=17% Similarity=0.183 Sum_probs=77.2
Q ss_pred ECCEEEEEccccCCCCCcCcEEEEEcCCCceEeccCCCCCCCCCcccEEEEECCcEEEEEcCCCCCCCCC-----eEEEE
Q 005043 206 ASSVLILFGGEDGKRRKLNDLHMFDLKSLTWLPLHCTGTGPSPRSNHVAALYDDKNLLIFGGSSKSKTLN-----DLYSL 280 (717)
Q Consensus 206 ~~~~Lyv~GG~~~~~~~~~~v~~yD~~t~~W~~l~~~g~~P~~R~~~aa~~~~~~~lyV~GG~~~~~~~n-----dv~~y 280 (717)
.+++|+.++.. ..+.+||..+..-...+ .++.+.....++.++++ ||++.......... .++.+
T Consensus 75 ~gskIv~~d~~-------~~t~vyDt~t~av~~~P---~l~~pk~~pisv~VG~~-LY~m~~~~~~~~~~~~~~~~FE~l 143 (342)
T PF07893_consen 75 HGSKIVAVDQS-------GRTLVYDTDTRAVATGP---RLHSPKRCPISVSVGDK-LYAMDRSPFPEPAGRPDFPCFEAL 143 (342)
T ss_pred cCCeEEEEcCC-------CCeEEEECCCCeEeccC---CCCCCCcceEEEEeCCe-EEEeeccCccccccCccceeEEEe
Confidence 58899998653 34789999998777655 56667777778888888 99998874322211 34444
Q ss_pred --E--------CCCCcEEEeecCCCCCCCCc-------ceEEEEE-CCEEEE-EecCCCCCccCeEEEEECCCCcEEEee
Q 005043 281 --D--------FETMIWTRIKIRGFHPSPRA-------GCCGVLC-GTKWYI-AGGGSRKKRHAETLIFDILKGEWSVAI 341 (717)
Q Consensus 281 --d--------~~t~~W~~v~~~g~~P~~R~-------~~sav~~-~~~IyV-~GG~~~~~~~~dv~~yD~~t~~W~~l~ 341 (717)
+ .....|..++. +|..+. -.+-+++ +..|+| +-|.. .-+|.||..+.+|+.+.
T Consensus 144 ~~~~~~~~~~~~~~w~W~~LP~---PPf~~~~~~~~~~i~sYavv~g~~I~vS~~~~~-----~GTysfDt~~~~W~~~G 215 (342)
T PF07893_consen 144 VYRPPPDDPSPEESWSWRSLPP---PPFVRDRRYSDYRITSYAVVDGRTIFVSVNGRR-----WGTYSFDTESHEWRKHG 215 (342)
T ss_pred ccccccccccCCCcceEEcCCC---CCccccCCcccceEEEEEEecCCeEEEEecCCc-----eEEEEEEcCCcceeecc
Confidence 3 23446777654 243322 2233444 778888 44432 23899999999999986
Q ss_pred c
Q 005043 342 T 342 (717)
Q Consensus 342 ~ 342 (717)
.
T Consensus 216 d 216 (342)
T PF07893_consen 216 D 216 (342)
T ss_pred c
Confidence 3
No 71
>PRK13684 Ycf48-like protein; Provisional
Probab=95.87 E-value=3.5 Score=44.95 Aligned_cols=242 Identities=16% Similarity=0.158 Sum_probs=120.1
Q ss_pred CCCCCeEEeeecCCCCCCcceeEEEEEC-CEEEEEcccCCCCCcccEEEEEcCCCceEEccccccCCCCCCCCCCCcccc
Q 005043 71 GNSENWMVLSIAGDKPIPRFNHAAAVIG-NKMIVVGGESGNGLLDDVQVLNFDRFSWTAASSKLYLSPSSLPLKIPACRG 149 (717)
Q Consensus 71 ~~s~~W~~l~~~g~~P~~R~~haav~~~-~~lyV~GG~~~~~~~~~v~~yd~~t~~W~~l~~~~~~~~~~~~~~~p~r~~ 149 (717)
.....|+.+. .|......+.++.+ +..|++|-. ..+++=.=...+|+..... .+......
T Consensus 32 ~~~~~W~~~~----~~~~~~l~~v~F~d~~~g~avG~~------G~il~T~DgG~tW~~~~~~---------~~~~~~~l 92 (334)
T PRK13684 32 LSSSPWQVID----LPTEANLLDIAFTDPNHGWLVGSN------RTLLETNDGGETWEERSLD---------LPEENFRL 92 (334)
T ss_pred ccCCCcEEEe----cCCCCceEEEEEeCCCcEEEEECC------CEEEEEcCCCCCceECccC---------Ccccccce
Confidence 3567898885 34344444555554 567777732 1233322234589987642 11111112
Q ss_pred eEEEEECCEEEEEeccCCCCCCceEEEEEECCCCcEEEeeecCCCCCCceeeEEEEE-CCEEEEEccccCCCCCcCcEEE
Q 005043 150 HSLISWGKKVLLVGGKTDSGSDRVSVWTFDTETECWSVVEAKGDIPVARSGHTVVRA-SSVLILFGGEDGKRRKLNDLHM 228 (717)
Q Consensus 150 hs~v~~~~~Iyv~GG~~~~~~~~~~v~~yD~~t~~W~~l~~~g~~P~~R~~hs~~~~-~~~Lyv~GG~~~~~~~~~~v~~ 228 (717)
.++...++..|+.|.. ..+++-+-.-.+|+.+......|.. ...+..+ ++.+|+.|. ...+++
T Consensus 93 ~~v~~~~~~~~~~G~~-------g~i~~S~DgG~tW~~~~~~~~~~~~--~~~i~~~~~~~~~~~g~-------~G~i~~ 156 (334)
T PRK13684 93 ISISFKGDEGWIVGQP-------SLLLHTTDGGKNWTRIPLSEKLPGS--PYLITALGPGTAEMATN-------VGAIYR 156 (334)
T ss_pred eeeEEcCCcEEEeCCC-------ceEEEECCCCCCCeEccCCcCCCCC--ceEEEEECCCcceeeec-------cceEEE
Confidence 2333345566766532 1355544445689988631112322 2223333 345666643 233555
Q ss_pred EEcCCCceEeccCCCCCCCCCcccEEEEECCcEEEEEcCCCCCCCCCeEEEE-ECCCCcEEEeecCCCCCCCCcceEEEE
Q 005043 229 FDLKSLTWLPLHCTGTGPSPRSNHVAALYDDKNLLIFGGSSKSKTLNDLYSL-DFETMIWTRIKIRGFHPSPRAGCCGVL 307 (717)
Q Consensus 229 yD~~t~~W~~l~~~g~~P~~R~~~aa~~~~~~~lyV~GG~~~~~~~ndv~~y-d~~t~~W~~v~~~g~~P~~R~~~sav~ 307 (717)
-+-.-.+|+.+.. +..-..+.+....+..++++|... .++.. |....+|+.+.. +..+...+++.
T Consensus 157 S~DgG~tW~~~~~----~~~g~~~~i~~~~~g~~v~~g~~G------~i~~s~~~gg~tW~~~~~----~~~~~l~~i~~ 222 (334)
T PRK13684 157 TTDGGKNWEALVE----DAAGVVRNLRRSPDGKYVAVSSRG------NFYSTWEPGQTAWTPHQR----NSSRRLQSMGF 222 (334)
T ss_pred ECCCCCCceeCcC----CCcceEEEEEECCCCeEEEEeCCc------eEEEEcCCCCCeEEEeeC----CCcccceeeeE
Confidence 5555678998852 223334455555666444444332 24433 444567998854 33444455444
Q ss_pred E-CCEEEEEecCCCCCccCeEEEE--ECCCCcEEEeecCCCCCCCCCcceEEEEEEeCCCcEEEEEcCC
Q 005043 308 C-GTKWYIAGGGSRKKRHAETLIF--DILKGEWSVAITSPSSSVTSNKGFTLVLVQHKEKDFLVAFGGI 373 (717)
Q Consensus 308 ~-~~~IyV~GG~~~~~~~~dv~~y--D~~t~~W~~l~~~p~~~~~~r~g~s~v~v~~~~~~~I~v~GG~ 373 (717)
. ++.++++|... ..++ +-...+|+.+.. |. .....+...+.+. ..+.+|++|..
T Consensus 223 ~~~g~~~~vg~~G-------~~~~~s~d~G~sW~~~~~-~~--~~~~~~l~~v~~~--~~~~~~~~G~~ 279 (334)
T PRK13684 223 QPDGNLWMLARGG-------QIRFNDPDDLESWSKPII-PE--ITNGYGYLDLAYR--TPGEIWAGGGN 279 (334)
T ss_pred cCCCCEEEEecCC-------EEEEccCCCCCccccccC-Cc--cccccceeeEEEc--CCCCEEEEcCC
Confidence 3 67888887532 2334 233458997542 11 1112222223332 24567887764
No 72
>cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases. The alignment model contains an 8-bladed beta-propeller.
Probab=95.85 E-value=2.3 Score=48.94 Aligned_cols=144 Identities=14% Similarity=0.159 Sum_probs=74.3
Q ss_pred CCCCeEEeeecCCCCCCcceeEEEEECCEEEEEcccCCCCCcccEEEEEcCCC--ceEEccccccCCCCCCCCCCCcccc
Q 005043 72 NSENWMVLSIAGDKPIPRFNHAAAVIGNKMIVVGGESGNGLLDDVQVLNFDRF--SWTAASSKLYLSPSSLPLKIPACRG 149 (717)
Q Consensus 72 ~s~~W~~l~~~g~~P~~R~~haav~~~~~lyV~GG~~~~~~~~~v~~yd~~t~--~W~~l~~~~~~~~~~~~~~~p~r~~ 149 (717)
....|..-. +. ......+-++.+++||+.... ..++.+|+.+. .|+.-...... ...+....
T Consensus 39 ~~~~W~~~~--~~--~~~~~~sPvv~~g~vy~~~~~------g~l~AlD~~tG~~~W~~~~~~~~~------~~~~~~~~ 102 (488)
T cd00216 39 LKVAWTFST--GD--ERGQEGTPLVVDGDMYFTTSH------SALFALDAATGKVLWRYDPKLPAD------RGCCDVVN 102 (488)
T ss_pred ceeeEEEEC--CC--CCCcccCCEEECCEEEEeCCC------CcEEEEECCCChhhceeCCCCCcc------cccccccc
Confidence 456787432 10 122333446779999987543 36899999875 68875431100 00001111
Q ss_pred eEEEEEC-CEEEEEeccCCCCCCceEEEEEECCCCc--EEEeeecCCCCCCceeeEEEEECCEEEEEccccCCC---CCc
Q 005043 150 HSLISWG-KKVLLVGGKTDSGSDRVSVWTFDTETEC--WSVVEAKGDIPVARSGHTVVRASSVLILFGGEDGKR---RKL 223 (717)
Q Consensus 150 hs~v~~~-~~Iyv~GG~~~~~~~~~~v~~yD~~t~~--W~~l~~~g~~P~~R~~hs~~~~~~~Lyv~GG~~~~~---~~~ 223 (717)
...++.+ ++||+... ...++.+|..|++ |+.-......+......+.++.++.+|+ |..+... ...
T Consensus 103 ~g~~~~~~~~V~v~~~-------~g~v~AlD~~TG~~~W~~~~~~~~~~~~~i~ssP~v~~~~v~v-g~~~~~~~~~~~~ 174 (488)
T cd00216 103 RGVAYWDPRKVFFGTF-------DGRLVALDAETGKQVWKFGNNDQVPPGYTMTGAPTIVKKLVII-GSSGAEFFACGVR 174 (488)
T ss_pred CCcEEccCCeEEEecC-------CCeEEEEECCCCCEeeeecCCCCcCcceEecCCCEEECCEEEE-eccccccccCCCC
Confidence 2234446 78886432 1368999998765 8764321000000122233455666554 4322211 124
Q ss_pred CcEEEEEcCCCc--eEec
Q 005043 224 NDLHMFDLKSLT--WLPL 239 (717)
Q Consensus 224 ~~v~~yD~~t~~--W~~l 239 (717)
..++.||..+.+ |+.-
T Consensus 175 g~v~alD~~TG~~~W~~~ 192 (488)
T cd00216 175 GALRAYDVETGKLLWRFY 192 (488)
T ss_pred cEEEEEECCCCceeeEee
Confidence 678999998764 8753
No 73
>PRK05137 tolB translocation protein TolB; Provisional
Probab=95.77 E-value=4.6 Score=45.56 Aligned_cols=188 Identities=12% Similarity=0.021 Sum_probs=94.3
Q ss_pred eEEEEEECCCCcEEEeeecCCCCCCceeeEEEEECCEEEEEccccCCCCCcCcEEEEEcCCCceEeccCCCCCCCCCccc
Q 005043 173 VSVWTFDTETECWSVVEAKGDIPVARSGHTVVRASSVLILFGGEDGKRRKLNDLHMFDLKSLTWLPLHCTGTGPSPRSNH 252 (717)
Q Consensus 173 ~~v~~yD~~t~~W~~l~~~g~~P~~R~~hs~~~~~~~Lyv~GG~~~~~~~~~~v~~yD~~t~~W~~l~~~g~~P~~R~~~ 252 (717)
..+|++|+.++....+.. .+.........-.+..|++....++ ..++|.+|+.+.....+.. .+. ....
T Consensus 226 ~~i~~~dl~~g~~~~l~~---~~g~~~~~~~SPDG~~la~~~~~~g----~~~Iy~~d~~~~~~~~Lt~---~~~-~~~~ 294 (435)
T PRK05137 226 PRVYLLDLETGQRELVGN---FPGMTFAPRFSPDGRKVVMSLSQGG----NTDIYTMDLRSGTTTRLTD---SPA-IDTS 294 (435)
T ss_pred CEEEEEECCCCcEEEeec---CCCcccCcEECCCCCEEEEEEecCC----CceEEEEECCCCceEEccC---CCC-ccCc
Confidence 479999999998877653 2222111111112335544433222 2679999999888777752 221 1111
Q ss_pred EEEEECCcEEEEEcCCCCCCCCCeEEEEECCCCcEEEeecCCCCCCCCcceEEEEEC-CEEEEEecCCCCCccCeEEEEE
Q 005043 253 VAALYDDKNLLIFGGSSKSKTLNDLYSLDFETMIWTRIKIRGFHPSPRAGCCGVLCG-TKWYIAGGGSRKKRHAETLIFD 331 (717)
Q Consensus 253 aa~~~~~~~lyV~GG~~~~~~~ndv~~yd~~t~~W~~v~~~g~~P~~R~~~sav~~~-~~IyV~GG~~~~~~~~dv~~yD 331 (717)
....-+++.|++.....+ ..++|++|..+...+.+... ..........-+ +.|++.. .... ...++.+|
T Consensus 295 ~~~spDG~~i~f~s~~~g---~~~Iy~~d~~g~~~~~lt~~----~~~~~~~~~SpdG~~ia~~~-~~~~--~~~i~~~d 364 (435)
T PRK05137 295 PSYSPDGSQIVFESDRSG---SPQLYVMNADGSNPRRISFG----GGRYSTPVWSPRGDLIAFTK-QGGG--QFSIGVMK 364 (435)
T ss_pred eeEcCCCCEEEEEECCCC---CCeEEEEECCCCCeEEeecC----CCcccCeEECCCCCEEEEEE-cCCC--ceEEEEEE
Confidence 222234553443322211 24799999988888877542 111111112224 4454443 2211 24689999
Q ss_pred CCCCcEEEeecCCCCCCCCCcceEEEEEEeCCCcEEEEEcCCCCCC-CCeEEEEEccCCc
Q 005043 332 ILKGEWSVAITSPSSSVTSNKGFTLVLVQHKEKDFLVAFGGIKKEP-SNQVEVLSIEKNE 390 (717)
Q Consensus 332 ~~t~~W~~l~~~p~~~~~~r~g~s~v~v~~~~~~~I~v~GG~~~~~-~n~v~vyd~~~~e 390 (717)
+.+.....+... . ......+.. ++..|+......+.. ...++++|+....
T Consensus 365 ~~~~~~~~lt~~--~------~~~~p~~sp-DG~~i~~~~~~~~~~~~~~L~~~dl~g~~ 415 (435)
T PRK05137 365 PDGSGERILTSG--F------LVEGPTWAP-NGRVIMFFRQTPGSGGAPKLYTVDLTGRN 415 (435)
T ss_pred CCCCceEeccCC--C------CCCCCeECC-CCCEEEEEEccCCCCCcceEEEEECCCCc
Confidence 877766655311 1 111122322 233444333322221 2578899886654
No 74
>PTZ00421 coronin; Provisional
Probab=95.69 E-value=5.5 Score=45.87 Aligned_cols=154 Identities=16% Similarity=0.138 Sum_probs=73.4
Q ss_pred CEEEEEeccCCCCCCceEEEEEECCCCcEEEeeecCCCCCCceeeEEEE-ECCEEEEEccccCCCCCcCcEEEEEcCCCc
Q 005043 157 KKVLLVGGKTDSGSDRVSVWTFDTETECWSVVEAKGDIPVARSGHTVVR-ASSVLILFGGEDGKRRKLNDLHMFDLKSLT 235 (717)
Q Consensus 157 ~~Iyv~GG~~~~~~~~~~v~~yD~~t~~W~~l~~~g~~P~~R~~hs~~~-~~~~Lyv~GG~~~~~~~~~~v~~yD~~t~~ 235 (717)
+.+++.||.+. .+.+||+.+..-...-. .... .-.++.. .++.+++.|+.++ .+.+||+.+..
T Consensus 138 ~~iLaSgs~Dg------tVrIWDl~tg~~~~~l~--~h~~--~V~sla~spdG~lLatgs~Dg------~IrIwD~rsg~ 201 (493)
T PTZ00421 138 MNVLASAGADM------VVNVWDVERGKAVEVIK--CHSD--QITSLEWNLDGSLLCTTSKDK------KLNIIDPRDGT 201 (493)
T ss_pred CCEEEEEeCCC------EEEEEECCCCeEEEEEc--CCCC--ceEEEEEECCCCEEEEecCCC------EEEEEECCCCc
Confidence 45777777642 58889988765322110 0111 1122222 3567777777543 47889998765
Q ss_pred eE-eccCCCCCCCCCcccEEEEECCcEEEEEcCCCCCCCCCeEEEEECCCCcE--EEeecCCCCCCCCcceEEEEE--CC
Q 005043 236 WL-PLHCTGTGPSPRSNHVAALYDDKNLLIFGGSSKSKTLNDLYSLDFETMIW--TRIKIRGFHPSPRAGCCGVLC--GT 310 (717)
Q Consensus 236 W~-~l~~~g~~P~~R~~~aa~~~~~~~lyV~GG~~~~~~~ndv~~yd~~t~~W--~~v~~~g~~P~~R~~~sav~~--~~ 310 (717)
-. .+. .....+........++. .++..|.+.. .-..+..||+.+... ..... . ......+..+ ++
T Consensus 202 ~v~tl~---~H~~~~~~~~~w~~~~~-~ivt~G~s~s-~Dr~VklWDlr~~~~p~~~~~~----d-~~~~~~~~~~d~d~ 271 (493)
T PTZ00421 202 IVSSVE---AHASAKSQRCLWAKRKD-LIITLGCSKS-QQRQIMLWDTRKMASPYSTVDL----D-QSSALFIPFFDEDT 271 (493)
T ss_pred EEEEEe---cCCCCcceEEEEcCCCC-eEEEEecCCC-CCCeEEEEeCCCCCCceeEecc----C-CCCceEEEEEcCCC
Confidence 22 121 11111111112222334 4444444321 124688999865331 11110 0 1111222222 45
Q ss_pred EEEEEecCCCCCccCeEEEEECCCCcEEEe
Q 005043 311 KWYIAGGGSRKKRHAETLIFDILKGEWSVA 340 (717)
Q Consensus 311 ~IyV~GG~~~~~~~~dv~~yD~~t~~W~~l 340 (717)
.++++||... ..|.+||+.+......
T Consensus 272 ~~L~lggkgD----g~Iriwdl~~~~~~~~ 297 (493)
T PTZ00421 272 NLLYIGSKGE----GNIRCFELMNERLTFC 297 (493)
T ss_pred CEEEEEEeCC----CeEEEEEeeCCceEEE
Confidence 5666666322 2488899887765544
No 75
>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3.1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.
Probab=95.67 E-value=4.2 Score=44.38 Aligned_cols=276 Identities=18% Similarity=0.212 Sum_probs=129.7
Q ss_pred CCCCeEEeeecCCCCCCcceeEEEEECCEEEEEcccCCCCCcccEEEEE--cCCCceEEccccccCCCCCCCCCCCcccc
Q 005043 72 NSENWMVLSIAGDKPIPRFNHAAAVIGNKMIVVGGESGNGLLDDVQVLN--FDRFSWTAASSKLYLSPSSLPLKIPACRG 149 (717)
Q Consensus 72 ~s~~W~~l~~~g~~P~~R~~haav~~~~~lyV~GG~~~~~~~~~v~~yd--~~t~~W~~l~~~~~~~~~~~~~~~p~r~~ 149 (717)
.+..+..+......+.|-+ -+..--++.||+..... .....+..|. ..+.+.+.+... +.... .
T Consensus 23 ~~g~l~~~~~~~~~~~Ps~-l~~~~~~~~LY~~~e~~--~~~g~v~~~~i~~~~g~L~~~~~~----------~~~g~-~ 88 (345)
T PF10282_consen 23 ETGTLTLVQTVAEGENPSW-LAVSPDGRRLYVVNEGS--GDSGGVSSYRIDPDTGTLTLLNSV----------PSGGS-S 88 (345)
T ss_dssp TTTEEEEEEEEEESSSECC-EEE-TTSSEEEEEETTS--STTTEEEEEEEETTTTEEEEEEEE----------EESSS-C
T ss_pred CCCCceEeeeecCCCCCce-EEEEeCCCEEEEEEccc--cCCCCEEEEEECCCcceeEEeeee----------ccCCC-C
Confidence 6777877753111111211 11111257788886643 1223455554 444677776652 11111 2
Q ss_pred eEEEEE---CCEEEEEeccCCCCCCceEEEEEECCCC-cEEEee------ecCC---CCCCceeeEEEEEC--CEEEEEc
Q 005043 150 HSLISW---GKKVLLVGGKTDSGSDRVSVWTFDTETE-CWSVVE------AKGD---IPVARSGHTVVRAS--SVLILFG 214 (717)
Q Consensus 150 hs~v~~---~~~Iyv~GG~~~~~~~~~~v~~yD~~t~-~W~~l~------~~g~---~P~~R~~hs~~~~~--~~Lyv~G 214 (717)
.+.+.+ +..||+.- +. ...+.+|++..+ .-.... ..+. ....-..|.+.... +.+|+..
T Consensus 89 p~~i~~~~~g~~l~van-y~-----~g~v~v~~l~~~g~l~~~~~~~~~~g~g~~~~rq~~~h~H~v~~~pdg~~v~v~d 162 (345)
T PF10282_consen 89 PCHIAVDPDGRFLYVAN-YG-----GGSVSVFPLDDDGSLGEVVQTVRHEGSGPNPDRQEGPHPHQVVFSPDGRFVYVPD 162 (345)
T ss_dssp EEEEEECTTSSEEEEEE-TT-----TTEEEEEEECTTSEEEEEEEEEESEEEESSTTTTSSTCEEEEEE-TTSSEEEEEE
T ss_pred cEEEEEecCCCEEEEEE-cc-----CCeEEEEEccCCcccceeeeecccCCCCCcccccccccceeEEECCCCCEEEEEe
Confidence 223333 45566642 21 125777777653 222211 0011 12233456666653 4677762
Q ss_pred cccCCCCCcCcEEEEEcCCCc--eEeccCCCCCCCC-CcccEEEEECCcEEEEEcCCCCCCCCCeEEEEECC--CCcEEE
Q 005043 215 GEDGKRRKLNDLHMFDLKSLT--WLPLHCTGTGPSP-RSNHVAALYDDKNLLIFGGSSKSKTLNDLYSLDFE--TMIWTR 289 (717)
Q Consensus 215 G~~~~~~~~~~v~~yD~~t~~--W~~l~~~g~~P~~-R~~~aa~~~~~~~lyV~GG~~~~~~~ndv~~yd~~--t~~W~~ 289 (717)
.-.+.+++|+..... ....... ..|.. --.|.+..-+++++||....+ +.|..|+.. +..|+.
T Consensus 163 ------lG~D~v~~~~~~~~~~~l~~~~~~-~~~~G~GPRh~~f~pdg~~~Yv~~e~s-----~~v~v~~~~~~~g~~~~ 230 (345)
T PF10282_consen 163 ------LGADRVYVYDIDDDTGKLTPVDSI-KVPPGSGPRHLAFSPDGKYAYVVNELS-----NTVSVFDYDPSDGSLTE 230 (345)
T ss_dssp ------TTTTEEEEEEE-TTS-TEEEEEEE-ECSTTSSEEEEEE-TTSSEEEEEETTT-----TEEEEEEEETTTTEEEE
T ss_pred ------cCCCEEEEEEEeCCCceEEEeecc-ccccCCCCcEEEEcCCcCEEEEecCCC-----CcEEEEeecccCCceeE
Confidence 124678999887665 5442211 11111 112333333556899987654 456666554 777776
Q ss_pred eecCCCCCC---CCcceEEEEE---CCEEEEEecCCCCCccCeEEEEEC--CCCcEEEeecCCCCCCCCCcceEEEEEEe
Q 005043 290 IKIRGFHPS---PRAGCCGVLC---GTKWYIAGGGSRKKRHAETLIFDI--LKGEWSVAITSPSSSVTSNKGFTLVLVQH 361 (717)
Q Consensus 290 v~~~g~~P~---~R~~~sav~~---~~~IyV~GG~~~~~~~~dv~~yD~--~t~~W~~l~~~p~~~~~~r~g~s~v~v~~ 361 (717)
+......|. .....+.+.+ +..+|+.-.. .+.|.+|++ .+.+.+.+...+.....+| .+ .+ .
T Consensus 231 ~~~~~~~~~~~~~~~~~~~i~ispdg~~lyvsnr~-----~~sI~vf~~d~~~g~l~~~~~~~~~G~~Pr---~~-~~-s 300 (345)
T PF10282_consen 231 IQTISTLPEGFTGENAPAEIAISPDGRFLYVSNRG-----SNSISVFDLDPATGTLTLVQTVPTGGKFPR---HF-AF-S 300 (345)
T ss_dssp EEEEESCETTSCSSSSEEEEEE-TTSSEEEEEECT-----TTEEEEEEECTTTTTEEEEEEEEESSSSEE---EE-EE--
T ss_pred EEEeeeccccccccCCceeEEEecCCCEEEEEecc-----CCEEEEEEEecCCCceEEEEEEeCCCCCcc---EE-EE-e
Confidence 654322222 2212333333 4567776543 345777776 4556666554332211122 22 22 2
Q ss_pred CCCcEEEEEcCCCCCCCCeEEEEEcc--CCcccC
Q 005043 362 KEKDFLVAFGGIKKEPSNQVEVLSIE--KNESSM 393 (717)
Q Consensus 362 ~~~~~I~v~GG~~~~~~n~v~vyd~~--~~eW~~ 393 (717)
+++.+||+.+.. .+.|.+|+++ +..+..
T Consensus 301 ~~g~~l~Va~~~----s~~v~vf~~d~~tG~l~~ 330 (345)
T PF10282_consen 301 PDGRYLYVANQD----SNTVSVFDIDPDTGKLTP 330 (345)
T ss_dssp TTSSEEEEEETT----TTEEEEEEEETTTTEEEE
T ss_pred CCCCEEEEEecC----CCeEEEEEEeCCCCcEEE
Confidence 345666664433 3468888765 444433
No 76
>PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A.
Probab=95.63 E-value=4 Score=43.84 Aligned_cols=242 Identities=16% Similarity=0.242 Sum_probs=108.1
Q ss_pred CCCCeEEeeecCCCCCCcceeEEEEECCEEEEEcccCCCCCcccEEEEEcCCCceEEccccccCCCCCCCCCCCcccceE
Q 005043 72 NSENWMVLSIAGDKPIPRFNHAAAVIGNKMIVVGGESGNGLLDDVQVLNFDRFSWTAASSKLYLSPSSLPLKIPACRGHS 151 (717)
Q Consensus 72 ~s~~W~~l~~~g~~P~~R~~haav~~~~~lyV~GG~~~~~~~~~v~~yd~~t~~W~~l~~~~~~~~~~~~~~~p~r~~hs 151 (717)
-...|..+....+.+......+....++..||+|-.. -++.-.=...+|..++.. .+.|.. .+.
T Consensus 45 GG~tW~~~~~~~~~~~~~~l~~I~f~~~~g~ivG~~g------~ll~T~DgG~tW~~v~l~---------~~lpgs-~~~ 108 (302)
T PF14870_consen 45 GGKTWQPVSLDLDNPFDYHLNSISFDGNEGWIVGEPG------LLLHTTDGGKTWERVPLS---------SKLPGS-PFG 108 (302)
T ss_dssp TTSS-EE-----S-----EEEEEEEETTEEEEEEETT------EEEEESSTTSS-EE-------------TT-SS--EEE
T ss_pred CCccccccccCCCccceeeEEEEEecCCceEEEcCCc------eEEEecCCCCCcEEeecC---------CCCCCC-eeE
Confidence 4577998863222221223334455688899887421 123322234699998631 122222 233
Q ss_pred EEE-ECCEEEEEeccCCCCCCceEEEEEECCCCcEEEeeecCCCCCCceeeEEEEE-CCEEEEEccccCCCCCcCcEE-E
Q 005043 152 LIS-WGKKVLLVGGKTDSGSDRVSVWTFDTETECWSVVEAKGDIPVARSGHTVVRA-SSVLILFGGEDGKRRKLNDLH-M 228 (717)
Q Consensus 152 ~v~-~~~~Iyv~GG~~~~~~~~~~v~~yD~~t~~W~~l~~~g~~P~~R~~hs~~~~-~~~Lyv~GG~~~~~~~~~~v~-~ 228 (717)
+.. -++.++++|.. ..+++-.-.-.+|+.+.. +..-.-..+... ++.+++++- . ..++ .
T Consensus 109 i~~l~~~~~~l~~~~-------G~iy~T~DgG~tW~~~~~----~~~gs~~~~~r~~dG~~vavs~-~------G~~~~s 170 (302)
T PF14870_consen 109 ITALGDGSAELAGDR-------GAIYRTTDGGKTWQAVVS----ETSGSINDITRSSDGRYVAVSS-R------GNFYSS 170 (302)
T ss_dssp EEEEETTEEEEEETT---------EEEESSTTSSEEEEE-----S----EEEEEE-TTS-EEEEET-T------SSEEEE
T ss_pred EEEcCCCcEEEEcCC-------CcEEEeCCCCCCeeEccc----CCcceeEeEEECCCCcEEEEEC-c------ccEEEE
Confidence 443 46677777643 247776666788998763 222222223333 456555542 2 2233 5
Q ss_pred EEcCCCceEeccCCCCCCCCCcccEEEEECCcEEEEEcCCCCCCCCCeEEEEE--CCCCcEEEeecCCCCCCCCcce---
Q 005043 229 FDLKSLTWLPLHCTGTGPSPRSNHVAALYDDKNLLIFGGSSKSKTLNDLYSLD--FETMIWTRIKIRGFHPSPRAGC--- 303 (717)
Q Consensus 229 yD~~t~~W~~l~~~g~~P~~R~~~aa~~~~~~~lyV~GG~~~~~~~ndv~~yd--~~t~~W~~v~~~g~~P~~R~~~--- 303 (717)
.|+....|.... .+..|.-.++....+..|++.. .++ .++.-+ ....+|.+... |....++
T Consensus 171 ~~~G~~~w~~~~----r~~~~riq~~gf~~~~~lw~~~-~Gg-----~~~~s~~~~~~~~w~~~~~----~~~~~~~~~l 236 (302)
T PF14870_consen 171 WDPGQTTWQPHN----RNSSRRIQSMGFSPDGNLWMLA-RGG-----QIQFSDDPDDGETWSEPII----PIKTNGYGIL 236 (302)
T ss_dssp E-TT-SS-EEEE------SSS-EEEEEE-TTS-EEEEE-TTT-----EEEEEE-TTEEEEE---B-----TTSS--S-EE
T ss_pred ecCCCccceEEc----cCccceehhceecCCCCEEEEe-CCc-----EEEEccCCCCccccccccC----CcccCceeeE
Confidence 688878899884 5566777777777776577654 322 244444 34566776322 3323333
Q ss_pred EEEEE-CCEEEEEecCCCCCccCeEEEEECCCCcEEEeecCCCCCCCCCcceEEEEEEeCCCcEEEEEcCC
Q 005043 304 CGVLC-GTKWYIAGGGSRKKRHAETLIFDILKGEWSVAITSPSSSVTSNKGFTLVLVQHKEKDFLVAFGGI 373 (717)
Q Consensus 304 sav~~-~~~IyV~GG~~~~~~~~dv~~yD~~t~~W~~l~~~p~~~~~~r~g~s~v~v~~~~~~~I~v~GG~ 373 (717)
.++.. ++.+++.||.. .+++-.-..++|++..... ..+---+.++.+. .++-+++|-.
T Consensus 237 d~a~~~~~~~wa~gg~G------~l~~S~DgGktW~~~~~~~---~~~~n~~~i~f~~---~~~gf~lG~~ 295 (302)
T PF14870_consen 237 DLAYRPPNEIWAVGGSG------TLLVSTDGGKTWQKDRVGE---NVPSNLYRIVFVN---PDKGFVLGQD 295 (302)
T ss_dssp EEEESSSS-EEEEESTT-------EEEESSTTSS-EE-GGGT---TSSS---EEEEEE---TTEEEEE-ST
T ss_pred EEEecCCCCEEEEeCCc------cEEEeCCCCccceECcccc---CCCCceEEEEEcC---CCceEEECCC
Confidence 33333 58899998843 2555555678999975321 1122234444443 5677888865
No 77
>PRK04922 tolB translocation protein TolB; Provisional
Probab=95.59 E-value=5.4 Score=45.02 Aligned_cols=145 Identities=14% Similarity=0.144 Sum_probs=79.3
Q ss_pred eEEEEEECCCCcEEEeeecCCCCCCceeeEEEEECC-EEEEEccccCCCCCcCcEEEEEcCCCceEeccCCCCCCCCCcc
Q 005043 173 VSVWTFDTETECWSVVEAKGDIPVARSGHTVVRASS-VLILFGGEDGKRRKLNDLHMFDLKSLTWLPLHCTGTGPSPRSN 251 (717)
Q Consensus 173 ~~v~~yD~~t~~W~~l~~~g~~P~~R~~hs~~~~~~-~Lyv~GG~~~~~~~~~~v~~yD~~t~~W~~l~~~g~~P~~R~~ 251 (717)
..+|++|+.+++...+.. .+.... .....-++ +|++....++ ..++|++|+.++....+.. .+. . .
T Consensus 228 ~~l~~~dl~~g~~~~l~~---~~g~~~-~~~~SpDG~~l~~~~s~~g----~~~Iy~~d~~~g~~~~lt~---~~~-~-~ 294 (433)
T PRK04922 228 SAIYVQDLATGQRELVAS---FRGING-APSFSPDGRRLALTLSRDG----NPEIYVMDLGSRQLTRLTN---HFG-I-D 294 (433)
T ss_pred cEEEEEECCCCCEEEecc---CCCCcc-CceECCCCCEEEEEEeCCC----CceEEEEECCCCCeEECcc---CCC-C-c
Confidence 479999999888776652 221111 11112234 5554432222 2579999999888776642 111 1 1
Q ss_pred cEEEEE-CCcEEEEEcCCCCCCCCCeEEEEECCCCcEEEeecCCCCCCCCcceEEEE--ECCEEEEEecCCCCCccCeEE
Q 005043 252 HVAALY-DDKNLLIFGGSSKSKTLNDLYSLDFETMIWTRIKIRGFHPSPRAGCCGVL--CGTKWYIAGGGSRKKRHAETL 328 (717)
Q Consensus 252 ~aa~~~-~~~~lyV~GG~~~~~~~ndv~~yd~~t~~W~~v~~~g~~P~~R~~~sav~--~~~~IyV~GG~~~~~~~~dv~ 328 (717)
...... +++.|++.....+ ..++|.+|..++.++.+...+ ........ .++.|++..+..+ ...++
T Consensus 295 ~~~~~spDG~~l~f~sd~~g---~~~iy~~dl~~g~~~~lt~~g-----~~~~~~~~SpDG~~Ia~~~~~~~---~~~I~ 363 (433)
T PRK04922 295 TEPTWAPDGKSIYFTSDRGG---RPQIYRVAASGGSAERLTFQG-----NYNARASVSPDGKKIAMVHGSGG---QYRIA 363 (433)
T ss_pred cceEECCCCCEEEEEECCCC---CceEEEEECCCCCeEEeecCC-----CCccCEEECCCCCEEEEEECCCC---ceeEE
Confidence 122233 4453444332222 247999999998888876432 11212222 2455655544221 13789
Q ss_pred EEECCCCcEEEee
Q 005043 329 IFDILKGEWSVAI 341 (717)
Q Consensus 329 ~yD~~t~~W~~l~ 341 (717)
++|+.+..++.+.
T Consensus 364 v~d~~~g~~~~Lt 376 (433)
T PRK04922 364 VMDLSTGSVRTLT 376 (433)
T ss_pred EEECCCCCeEECC
Confidence 9999998888664
No 78
>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto
Probab=95.51 E-value=3 Score=41.65 Aligned_cols=188 Identities=12% Similarity=0.130 Sum_probs=85.6
Q ss_pred CCEEEEEeccCCCCCCceEEEEEECCCCcEEEeeecCCCCCCceeeEEEEEC-CEEEEEccccCCCCCcCcEEEEEcCCC
Q 005043 156 GKKVLLVGGKTDSGSDRVSVWTFDTETECWSVVEAKGDIPVARSGHTVVRAS-SVLILFGGEDGKRRKLNDLHMFDLKSL 234 (717)
Q Consensus 156 ~~~Iyv~GG~~~~~~~~~~v~~yD~~t~~W~~l~~~g~~P~~R~~hs~~~~~-~~Lyv~GG~~~~~~~~~~v~~yD~~t~ 234 (717)
++..+++|+.+ ..+.+||..+......-. .....-.++.... +.+++.|+.+ ..+..||+.+.
T Consensus 62 ~~~~l~~~~~~------~~i~i~~~~~~~~~~~~~----~~~~~i~~~~~~~~~~~~~~~~~~------~~i~~~~~~~~ 125 (289)
T cd00200 62 DGTYLASGSSD------KTIRLWDLETGECVRTLT----GHTSYVSSVAFSPDGRILSSSSRD------KTIKVWDVETG 125 (289)
T ss_pred CCCEEEEEcCC------CeEEEEEcCcccceEEEe----ccCCcEEEEEEcCCCCEEEEecCC------CeEEEEECCCc
Confidence 34466666652 368888888753222111 1111122333333 4566665522 45888998754
Q ss_pred ceEeccCCCCCCCCCcccEEEEECCcEEEEEcCCCCCCCCCeEEEEECCCCcE-EEeecCCCCCCCCcceEEEEE-CCEE
Q 005043 235 TWLPLHCTGTGPSPRSNHVAALYDDKNLLIFGGSSKSKTLNDLYSLDFETMIW-TRIKIRGFHPSPRAGCCGVLC-GTKW 312 (717)
Q Consensus 235 ~W~~l~~~g~~P~~R~~~aa~~~~~~~lyV~GG~~~~~~~ndv~~yd~~t~~W-~~v~~~g~~P~~R~~~sav~~-~~~I 312 (717)
.-...- . .....-.++....+..+++.|+.+ ..+..||+.+..- ..+.. ....-.++... ++..
T Consensus 126 ~~~~~~---~-~~~~~i~~~~~~~~~~~l~~~~~~-----~~i~i~d~~~~~~~~~~~~-----~~~~i~~~~~~~~~~~ 191 (289)
T cd00200 126 KCLTTL---R-GHTDWVNSVAFSPDGTFVASSSQD-----GTIKLWDLRTGKCVATLTG-----HTGEVNSVAFSPDGEK 191 (289)
T ss_pred EEEEEe---c-cCCCcEEEEEEcCcCCEEEEEcCC-----CcEEEEEccccccceeEec-----CccccceEEECCCcCE
Confidence 432221 1 111112233344434244444423 3588999864332 12211 11112222332 4445
Q ss_pred EEEecCCCCCccCeEEEEECCCCcEEEeecCCCCCCCCCcceEEEEEEeCCCcEEEEEcCCCCCCCCeEEEEEccCCc
Q 005043 313 YIAGGGSRKKRHAETLIFDILKGEWSVAITSPSSSVTSNKGFTLVLVQHKEKDFLVAFGGIKKEPSNQVEVLSIEKNE 390 (717)
Q Consensus 313 yV~GG~~~~~~~~dv~~yD~~t~~W~~l~~~p~~~~~~r~g~s~v~v~~~~~~~I~v~GG~~~~~~n~v~vyd~~~~e 390 (717)
+++++.+ ..+.+||+.+....... .. .......+.+. .++.+++.|+.+ ..+.+||+.+.+
T Consensus 192 l~~~~~~-----~~i~i~d~~~~~~~~~~--~~----~~~~i~~~~~~--~~~~~~~~~~~~----~~i~i~~~~~~~ 252 (289)
T cd00200 192 LLSSSSD-----GTIKLWDLSTGKCLGTL--RG----HENGVNSVAFS--PDGYLLASGSED----GTIRVWDLRTGE 252 (289)
T ss_pred EEEecCC-----CcEEEEECCCCceecch--hh----cCCceEEEEEc--CCCcEEEEEcCC----CcEEEEEcCCce
Confidence 5666543 35889998774433221 00 11112222332 234555555522 257888877543
No 79
>KOG2055 consensus WD40 repeat protein [General function prediction only]
Probab=95.49 E-value=1 Score=49.69 Aligned_cols=153 Identities=12% Similarity=0.102 Sum_probs=89.0
Q ss_pred CCEEEEEeccCCCCCCceEEEEEECCCCcEEEeeecCCCCCCceeeEEEEECCE-EEEEccccCCCCCcCcEEEEEcCCC
Q 005043 156 GKKVLLVGGKTDSGSDRVSVWTFDTETECWSVVEAKGDIPVARSGHTVVRASSV-LILFGGEDGKRRKLNDLHMFDLKSL 234 (717)
Q Consensus 156 ~~~Iyv~GG~~~~~~~~~~v~~yD~~t~~W~~l~~~g~~P~~R~~hs~~~~~~~-Lyv~GG~~~~~~~~~~v~~yD~~t~ 234 (717)
..-+.+.+|.+. .-.+|..|-+++. .+....--..|... +...-+|. .++++|+. .-+|.||+.+.
T Consensus 224 ~~plllvaG~d~----~lrifqvDGk~N~--~lqS~~l~~fPi~~-a~f~p~G~~~i~~s~rr------ky~ysyDle~a 290 (514)
T KOG2055|consen 224 TAPLLLVAGLDG----TLRIFQVDGKVNP--KLQSIHLEKFPIQK-AEFAPNGHSVIFTSGRR------KYLYSYDLETA 290 (514)
T ss_pred CCceEEEecCCC----cEEEEEecCccCh--hheeeeeccCccce-eeecCCCceEEEecccc------eEEEEeecccc
Confidence 356888999853 2356666766665 22210001111111 11122444 67776643 45899999999
Q ss_pred ceEeccCCCCCCCCCcccEEEEECCcEEEEEcCCCCCCCCCeEEEEECCCCcEEEeecCCCCCCCCcceEEEEECCEEEE
Q 005043 235 TWLPLHCTGTGPSPRSNHVAALYDDKNLLIFGGSSKSKTLNDLYSLDFETMIWTRIKIRGFHPSPRAGCCGVLCGTKWYI 314 (717)
Q Consensus 235 ~W~~l~~~g~~P~~R~~~aa~~~~~~~lyV~GG~~~~~~~ndv~~yd~~t~~W~~v~~~g~~P~~R~~~sav~~~~~IyV 314 (717)
+-+++.....++..-...-.+...+. ++++-|..+ .|+.+...|+.|..--.. +..-...+....+..||+
T Consensus 291 k~~k~~~~~g~e~~~~e~FeVShd~~-fia~~G~~G-----~I~lLhakT~eli~s~Ki---eG~v~~~~fsSdsk~l~~ 361 (514)
T KOG2055|consen 291 KVTKLKPPYGVEEKSMERFEVSHDSN-FIAIAGNNG-----HIHLLHAKTKELITSFKI---EGVVSDFTFSSDSKELLA 361 (514)
T ss_pred ccccccCCCCcccchhheeEecCCCC-eEEEcccCc-----eEEeehhhhhhhhheeee---ccEEeeEEEecCCcEEEE
Confidence 99998755555533333344556666 666666654 388888888888643221 212222222334567788
Q ss_pred EecCCCCCccCeEEEEECCCCc
Q 005043 315 AGGGSRKKRHAETLIFDILKGE 336 (717)
Q Consensus 315 ~GG~~~~~~~~dv~~yD~~t~~ 336 (717)
+||.. +||++|+..+.
T Consensus 362 ~~~~G------eV~v~nl~~~~ 377 (514)
T KOG2055|consen 362 SGGTG------EVYVWNLRQNS 377 (514)
T ss_pred EcCCc------eEEEEecCCcc
Confidence 88753 69999998873
No 80
>KOG2055 consensus WD40 repeat protein [General function prediction only]
Probab=95.39 E-value=0.7 Score=50.98 Aligned_cols=153 Identities=16% Similarity=0.219 Sum_probs=86.4
Q ss_pred CEEEEEcccCCCCCcccEEEEEcCCCceEEccccccCCCCCCCCCCCcccceEEEEECCEEEEEeccCCCCCCceEEEEE
Q 005043 99 NKMIVVGGESGNGLLDDVQVLNFDRFSWTAASSKLYLSPSSLPLKIPACRGHSLISWGKKVLLVGGKTDSGSDRVSVWTF 178 (717)
Q Consensus 99 ~~lyV~GG~~~~~~~~~v~~yd~~t~~W~~l~~~~~~~~~~~~~~~p~r~~hs~v~~~~~Iyv~GG~~~~~~~~~~v~~y 178 (717)
--+.+++|.++.- .+|..|-.+|. .+..+- +...+....+....|....+++|.. .-+|.|
T Consensus 225 ~plllvaG~d~~l---rifqvDGk~N~--~lqS~~--------l~~fPi~~a~f~p~G~~~i~~s~rr------ky~ysy 285 (514)
T KOG2055|consen 225 APLLLVAGLDGTL---RIFQVDGKVNP--KLQSIH--------LEKFPIQKAEFAPNGHSVIFTSGRR------KYLYSY 285 (514)
T ss_pred CceEEEecCCCcE---EEEEecCccCh--hheeee--------eccCccceeeecCCCceEEEecccc------eEEEEe
Confidence 4499999987542 34444444443 443321 1111111122222234377777753 258999
Q ss_pred ECCCCcEEEeeecCCCCCCceeeEEEEECCEEEEEccccCCCCCcCcEEEEEcCCCceEeccCCCCCCCCCcccEEEEEC
Q 005043 179 DTETECWSVVEAKGDIPVARSGHTVVRASSVLILFGGEDGKRRKLNDLHMFDLKSLTWLPLHCTGTGPSPRSNHVAALYD 258 (717)
Q Consensus 179 D~~t~~W~~l~~~g~~P~~R~~hs~~~~~~~Lyv~GG~~~~~~~~~~v~~yD~~t~~W~~l~~~g~~P~~R~~~aa~~~~ 258 (717)
|+.+.+-+++.+...++.+-...-.+..++.++++-|.. ..|+.+...|+.|..-- .++......+ ..-+
T Consensus 286 Dle~ak~~k~~~~~g~e~~~~e~FeVShd~~fia~~G~~------G~I~lLhakT~eli~s~---KieG~v~~~~-fsSd 355 (514)
T KOG2055|consen 286 DLETAKVTKLKPPYGVEEKSMERFEVSHDSNFIAIAGNN------GHIHLLHAKTKELITSF---KIEGVVSDFT-FSSD 355 (514)
T ss_pred eccccccccccCCCCcccchhheeEecCCCCeEEEcccC------ceEEeehhhhhhhhhee---eeccEEeeEE-EecC
Confidence 999999998886555553322222334455566666543 34778888888885321 2222222222 2345
Q ss_pred CcEEEEEcCCCCCCCCCeEEEEECCCCc
Q 005043 259 DKNLLIFGGSSKSKTLNDLYSLDFETMI 286 (717)
Q Consensus 259 ~~~lyV~GG~~~~~~~ndv~~yd~~t~~ 286 (717)
++.||+.||++ .||+||+..+.
T Consensus 356 sk~l~~~~~~G------eV~v~nl~~~~ 377 (514)
T KOG2055|consen 356 SKELLASGGTG------EVYVWNLRQNS 377 (514)
T ss_pred CcEEEEEcCCc------eEEEEecCCcc
Confidence 67799999875 59999998763
No 81
>PRK00178 tolB translocation protein TolB; Provisional
Probab=95.34 E-value=6.3 Score=44.24 Aligned_cols=145 Identities=11% Similarity=0.095 Sum_probs=80.1
Q ss_pred eEEEEEECCCCcEEEeeecCCCCCCceeeEEEEE-CC-EEEEEccccCCCCCcCcEEEEEcCCCceEeccCCCCCCCCCc
Q 005043 173 VSVWTFDTETECWSVVEAKGDIPVARSGHTVVRA-SS-VLILFGGEDGKRRKLNDLHMFDLKSLTWLPLHCTGTGPSPRS 250 (717)
Q Consensus 173 ~~v~~yD~~t~~W~~l~~~g~~P~~R~~hs~~~~-~~-~Lyv~GG~~~~~~~~~~v~~yD~~t~~W~~l~~~g~~P~~R~ 250 (717)
..+|++|+.++.-+.+.. .+. ........ ++ +|++..-.++ ..++|++|+.+..++.+.. .+. ..
T Consensus 223 ~~l~~~~l~~g~~~~l~~---~~g--~~~~~~~SpDG~~la~~~~~~g----~~~Iy~~d~~~~~~~~lt~---~~~-~~ 289 (430)
T PRK00178 223 PRIFVQNLDTGRREQITN---FEG--LNGAPAWSPDGSKLAFVLSKDG----NPEIYVMDLASRQLSRVTN---HPA-ID 289 (430)
T ss_pred CEEEEEECCCCCEEEccC---CCC--CcCCeEECCCCCEEEEEEccCC----CceEEEEECCCCCeEEccc---CCC-Cc
Confidence 379999999988776652 121 11112222 33 4544322221 2579999999999887752 111 11
Q ss_pred ccEEEEECCcEEEEEcCCCCCCCCCeEEEEECCCCcEEEeecCCCCCCCCcceEEE-EE-CCEEEEEecCCCCCccCeEE
Q 005043 251 NHVAALYDDKNLLIFGGSSKSKTLNDLYSLDFETMIWTRIKIRGFHPSPRAGCCGV-LC-GTKWYIAGGGSRKKRHAETL 328 (717)
Q Consensus 251 ~~aa~~~~~~~lyV~GG~~~~~~~ndv~~yd~~t~~W~~v~~~g~~P~~R~~~sav-~~-~~~IyV~GG~~~~~~~~dv~ 328 (717)
......-+++.|++.....+ ...+|.+|+.++.++.+...+ ....... .- ++.|++.....+ ...++
T Consensus 290 ~~~~~spDg~~i~f~s~~~g---~~~iy~~d~~~g~~~~lt~~~-----~~~~~~~~Spdg~~i~~~~~~~~---~~~l~ 358 (430)
T PRK00178 290 TEPFWGKDGRTLYFTSDRGG---KPQIYKVNVNGGRAERVTFVG-----NYNARPRLSADGKTLVMVHRQDG---NFHVA 358 (430)
T ss_pred CCeEECCCCCEEEEEECCCC---CceEEEEECCCCCEEEeecCC-----CCccceEECCCCCEEEEEEccCC---ceEEE
Confidence 11122234554554432221 247999999999988876431 1111112 22 445555543222 24699
Q ss_pred EEECCCCcEEEee
Q 005043 329 IFDILKGEWSVAI 341 (717)
Q Consensus 329 ~yD~~t~~W~~l~ 341 (717)
.+|+.+..++.+.
T Consensus 359 ~~dl~tg~~~~lt 371 (430)
T PRK00178 359 AQDLQRGSVRILT 371 (430)
T ss_pred EEECCCCCEEEcc
Confidence 9999998888775
No 82
>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species. These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....
Probab=95.19 E-value=4.4 Score=41.64 Aligned_cols=213 Identities=16% Similarity=0.121 Sum_probs=111.2
Q ss_pred CCEEEEEeccCCCCCCceEEEEEECCCCcEEEeeecCCCCCCceeeEEEEE--CCEEEEEccccCCCCCcCcEEEEEcCC
Q 005043 156 GKKVLLVGGKTDSGSDRVSVWTFDTETECWSVVEAKGDIPVARSGHTVVRA--SSVLILFGGEDGKRRKLNDLHMFDLKS 233 (717)
Q Consensus 156 ~~~Iyv~GG~~~~~~~~~~v~~yD~~t~~W~~l~~~g~~P~~R~~hs~~~~--~~~Lyv~GG~~~~~~~~~~v~~yD~~t 233 (717)
++.+|+..-. ...++++|+.+..-..+.. +. ..+++.. ++.+|+... ..+.++|+.+
T Consensus 11 ~g~l~~~D~~------~~~i~~~~~~~~~~~~~~~----~~---~~G~~~~~~~g~l~v~~~--------~~~~~~d~~~ 69 (246)
T PF08450_consen 11 DGRLYWVDIP------GGRIYRVDPDTGEVEVIDL----PG---PNGMAFDRPDGRLYVADS--------GGIAVVDPDT 69 (246)
T ss_dssp TTEEEEEETT------TTEEEEEETTTTEEEEEES----SS---EEEEEEECTTSEEEEEET--------TCEEEEETTT
T ss_pred CCEEEEEEcC------CCEEEEEECCCCeEEEEec----CC---CceEEEEccCCEEEEEEc--------CceEEEecCC
Confidence 5778887332 2379999999998776652 33 3334443 678888743 3356779999
Q ss_pred CceEeccCC--CCCCCCCcccEEEEECCcEEEEEcCCCC-CCCC--CeEEEEECCCCcEEEeecCCCCCCCCcceEEEEE
Q 005043 234 LTWLPLHCT--GTGPSPRSNHVAALYDDKNLLIFGGSSK-SKTL--NDLYSLDFETMIWTRIKIRGFHPSPRAGCCGVLC 308 (717)
Q Consensus 234 ~~W~~l~~~--g~~P~~R~~~aa~~~~~~~lyV~GG~~~-~~~~--ndv~~yd~~t~~W~~v~~~g~~P~~R~~~sav~~ 308 (717)
.+++.+... +..+..+..-. ++-.+..||+..-... .... ..++++++. .+.+.+... ... --+++..
T Consensus 70 g~~~~~~~~~~~~~~~~~~ND~-~vd~~G~ly~t~~~~~~~~~~~~g~v~~~~~~-~~~~~~~~~----~~~-pNGi~~s 142 (246)
T PF08450_consen 70 GKVTVLADLPDGGVPFNRPNDV-AVDPDGNLYVTDSGGGGASGIDPGSVYRIDPD-GKVTVVADG----LGF-PNGIAFS 142 (246)
T ss_dssp TEEEEEEEEETTCSCTEEEEEE-EE-TTS-EEEEEECCBCTTCGGSEEEEEEETT-SEEEEEEEE----ESS-EEEEEEE
T ss_pred CcEEEEeeccCCCcccCCCceE-EEcCCCCEEEEecCCCccccccccceEEECCC-CeEEEEecC----ccc-ccceEEC
Confidence 999887532 11122232222 3333344776432211 1111 579999998 666666442 111 1233333
Q ss_pred --CCEEEEEecCCCCCccCeEEEEECCCCc--EEE---eecCCCCCCCCCcceEEEEEEeCCCcEEEEEcCCCCCCCCeE
Q 005043 309 --GTKWYIAGGGSRKKRHAETLIFDILKGE--WSV---AITSPSSSVTSNKGFTLVLVQHKEKDFLVAFGGIKKEPSNQV 381 (717)
Q Consensus 309 --~~~IyV~GG~~~~~~~~dv~~yD~~t~~--W~~---l~~~p~~~~~~r~g~s~v~v~~~~~~~I~v~GG~~~~~~n~v 381 (717)
++.+|+.--.. ..||.|++.... +.. +...+.. ...--++ ++. .++.||+..- ..+.|
T Consensus 143 ~dg~~lyv~ds~~-----~~i~~~~~~~~~~~~~~~~~~~~~~~~---~g~pDG~-~vD--~~G~l~va~~----~~~~I 207 (246)
T PF08450_consen 143 PDGKTLYVADSFN-----GRIWRFDLDADGGELSNRRVFIDFPGG---PGYPDGL-AVD--SDGNLWVADW----GGGRI 207 (246)
T ss_dssp TTSSEEEEEETTT-----TEEEEEEEETTTCCEEEEEEEEE-SSS---SCEEEEE-EEB--TTS-EEEEEE----TTTEE
T ss_pred Ccchheeeccccc-----ceeEEEeccccccceeeeeeEEEcCCC---CcCCCcc-eEc--CCCCEEEEEc----CCCEE
Confidence 34677754332 459999986433 332 2111111 1111122 232 3567877621 11289
Q ss_pred EEEEccCCcccCccccccCCCCCcEEEEeeCCC
Q 005043 382 EVLSIEKNESSMGRRSTPNAKGPGQLLFEKRSS 414 (717)
Q Consensus 382 ~vyd~~~~eW~~~w~~~~~~~~p~~~~fgG~~~ 414 (717)
++|+++... .... ..+ ...|.-+.|||...
T Consensus 208 ~~~~p~G~~-~~~i-~~p-~~~~t~~~fgg~~~ 237 (246)
T PF08450_consen 208 VVFDPDGKL-LREI-ELP-VPRPTNCAFGGPDG 237 (246)
T ss_dssp EEEETTSCE-EEEE-E-S-SSSEEEEEEESTTS
T ss_pred EEECCCccE-EEEE-cCC-CCCEEEEEEECCCC
Confidence 999998432 1111 122 25677788987643
No 83
>PRK05137 tolB translocation protein TolB; Provisional
Probab=94.98 E-value=4.1 Score=45.99 Aligned_cols=193 Identities=8% Similarity=-0.027 Sum_probs=96.7
Q ss_pred ccEEEEEcCCCceEEccccccCCCCCCCCCCCcccceEEEEE-CCEEEEEeccCCCCCCceEEEEEECCCCcEEEeeecC
Q 005043 114 DDVQVLNFDRFSWTAASSKLYLSPSSLPLKIPACRGHSLISW-GKKVLLVGGKTDSGSDRVSVWTFDTETECWSVVEAKG 192 (717)
Q Consensus 114 ~~v~~yd~~t~~W~~l~~~~~~~~~~~~~~~p~r~~hs~v~~-~~~Iyv~GG~~~~~~~~~~v~~yD~~t~~W~~l~~~g 192 (717)
..+|++|+.+.....+... +.........- +++|++...... ..++|.+|+.+.....+..
T Consensus 226 ~~i~~~dl~~g~~~~l~~~------------~g~~~~~~~SPDG~~la~~~~~~g----~~~Iy~~d~~~~~~~~Lt~-- 287 (435)
T PRK05137 226 PRVYLLDLETGQRELVGNF------------PGMTFAPRFSPDGRKVVMSLSQGG----NTDIYTMDLRSGTTTRLTD-- 287 (435)
T ss_pred CEEEEEECCCCcEEEeecC------------CCcccCcEECCCCCEEEEEEecCC----CceEEEEECCCCceEEccC--
Confidence 4789999998887776541 11111111222 345554433221 2479999999988777653
Q ss_pred CCCCCceeeEEEEECCEEEEEccccCCCCCcCcEEEEEcCCCceEeccCCCCCCCCCcccEEEEECCcEEEEEcCCCCCC
Q 005043 193 DIPVARSGHTVVRASSVLILFGGEDGKRRKLNDLHMFDLKSLTWLPLHCTGTGPSPRSNHVAALYDDKNLLIFGGSSKSK 272 (717)
Q Consensus 193 ~~P~~R~~hs~~~~~~~Lyv~GG~~~~~~~~~~v~~yD~~t~~W~~l~~~g~~P~~R~~~aa~~~~~~~lyV~GG~~~~~ 272 (717)
.+.. .......-+++-++|.... .+ ...+|++|..+...+.+.. . ..........-+++.|++... ...
T Consensus 288 -~~~~-~~~~~~spDG~~i~f~s~~-~g--~~~Iy~~d~~g~~~~~lt~---~-~~~~~~~~~SpdG~~ia~~~~-~~~- 356 (435)
T PRK05137 288 -SPAI-DTSPSYSPDGSQIVFESDR-SG--SPQLYVMNADGSNPRRISF---G-GGRYSTPVWSPRGDLIAFTKQ-GGG- 356 (435)
T ss_pred -CCCc-cCceeEcCCCCEEEEEECC-CC--CCeEEEEECCCCCeEEeec---C-CCcccCeEECCCCCEEEEEEc-CCC-
Confidence 1111 1111122234333333211 11 2579999998887777642 1 122222223335554444332 111
Q ss_pred CCCeEEEEECCCCcEEEeecCCCCCCCCcceEEEEECCEEEEEecCCCCC-ccCeEEEEECCCCcEEEee
Q 005043 273 TLNDLYSLDFETMIWTRIKIRGFHPSPRAGCCGVLCGTKWYIAGGGSRKK-RHAETLIFDILKGEWSVAI 341 (717)
Q Consensus 273 ~~ndv~~yd~~t~~W~~v~~~g~~P~~R~~~sav~~~~~IyV~GG~~~~~-~~~dv~~yD~~t~~W~~l~ 341 (717)
...++.+|+.+.....+... .....-...-+++.+++-...... ....++.+|+....-+.+.
T Consensus 357 -~~~i~~~d~~~~~~~~lt~~-----~~~~~p~~spDG~~i~~~~~~~~~~~~~~L~~~dl~g~~~~~l~ 420 (435)
T PRK05137 357 -QFSIGVMKPDGSGERILTSG-----FLVEGPTWAPNGRVIMFFRQTPGSGGAPKLYTVDLTGRNEREVP 420 (435)
T ss_pred -ceEEEEEECCCCceEeccCC-----CCCCCCeECCCCCEEEEEEccCCCCCcceEEEEECCCCceEEcc
Confidence 24789999977776655432 111111122245544443322221 1247899999877665553
No 84
>PRK03629 tolB translocation protein TolB; Provisional
Probab=94.97 E-value=8.2 Score=43.56 Aligned_cols=147 Identities=16% Similarity=0.147 Sum_probs=77.7
Q ss_pred eEEEEEECCCCcEEEeeecCCCCCCceeeEEEEECC-EEEEEccccCCCCCcCcEEEEEcCCCceEeccCCCCCCCCCcc
Q 005043 173 VSVWTFDTETECWSVVEAKGDIPVARSGHTVVRASS-VLILFGGEDGKRRKLNDLHMFDLKSLTWLPLHCTGTGPSPRSN 251 (717)
Q Consensus 173 ~~v~~yD~~t~~W~~l~~~g~~P~~R~~hs~~~~~~-~Lyv~GG~~~~~~~~~~v~~yD~~t~~W~~l~~~g~~P~~R~~ 251 (717)
..++++|+.+++-+.+.. .+..-.. ....-++ +|++.....+ ..++|.+|+.+.....+.. .+. . .
T Consensus 223 ~~i~i~dl~~G~~~~l~~---~~~~~~~-~~~SPDG~~La~~~~~~g----~~~I~~~d~~tg~~~~lt~---~~~-~-~ 289 (429)
T PRK03629 223 SALVIQTLANGAVRQVAS---FPRHNGA-PAFSPDGSKLAFALSKTG----SLNLYVMDLASGQIRQVTD---GRS-N-N 289 (429)
T ss_pred cEEEEEECCCCCeEEccC---CCCCcCC-eEECCCCCEEEEEEcCCC----CcEEEEEECCCCCEEEccC---CCC-C-c
Confidence 469999998887666542 2221111 1112233 5555433222 2459999999988877752 111 1 1
Q ss_pred cEEEEE-CCcEEEEEcCCCCCCCCCeEEEEECCCCcEEEeecCCCCCCCCcceEEEEECCEEEEEecCCCCCccCeEEEE
Q 005043 252 HVAALY-DDKNLLIFGGSSKSKTLNDLYSLDFETMIWTRIKIRGFHPSPRAGCCGVLCGTKWYIAGGGSRKKRHAETLIF 330 (717)
Q Consensus 252 ~aa~~~-~~~~lyV~GG~~~~~~~ndv~~yd~~t~~W~~v~~~g~~P~~R~~~sav~~~~~IyV~GG~~~~~~~~dv~~y 330 (717)
...... +++.|+......+ ..++|.+|+.+.....+...+ .........-+++.+++.+.... ...++++
T Consensus 290 ~~~~wSPDG~~I~f~s~~~g---~~~Iy~~d~~~g~~~~lt~~~----~~~~~~~~SpDG~~Ia~~~~~~g--~~~I~~~ 360 (429)
T PRK03629 290 TEPTWFPDSQNLAYTSDQAG---RPQVYKVNINGGAPQRITWEG----SQNQDADVSSDGKFMVMVSSNGG--QQHIAKQ 360 (429)
T ss_pred CceEECCCCCEEEEEeCCCC---CceEEEEECCCCCeEEeecCC----CCccCEEECCCCCEEEEEEccCC--CceEEEE
Confidence 122222 4453433322211 247999999888777775421 11111222224444444333222 2468999
Q ss_pred ECCCCcEEEee
Q 005043 331 DILKGEWSVAI 341 (717)
Q Consensus 331 D~~t~~W~~l~ 341 (717)
|+.+..++.+.
T Consensus 361 dl~~g~~~~Lt 371 (429)
T PRK03629 361 DLATGGVQVLT 371 (429)
T ss_pred ECCCCCeEEeC
Confidence 99999988775
No 85
>PRK11028 6-phosphogluconolactonase; Provisional
Probab=94.97 E-value=6.4 Score=42.33 Aligned_cols=240 Identities=11% Similarity=0.099 Sum_probs=108.9
Q ss_pred EEEEEcccCCCCCcccEEEEEcCC-CceEEccccccCCCCCCCCCCCcccceEEEEE--CCEEEEEeccCCCCCCceEEE
Q 005043 100 KMIVVGGESGNGLLDDVQVLNFDR-FSWTAASSKLYLSPSSLPLKIPACRGHSLISW--GKKVLLVGGKTDSGSDRVSVW 176 (717)
Q Consensus 100 ~lyV~GG~~~~~~~~~v~~yd~~t-~~W~~l~~~~~~~~~~~~~~~p~r~~hs~v~~--~~~Iyv~GG~~~~~~~~~~v~ 176 (717)
++|+..+.+ +.+..||+.+ .++..+... +.. ...+.++.. ++.+|+.+. . ...+.
T Consensus 3 ~~y~~~~~~-----~~I~~~~~~~~g~l~~~~~~----------~~~-~~~~~l~~spd~~~lyv~~~-~-----~~~i~ 60 (330)
T PRK11028 3 IVYIASPES-----QQIHVWNLNHEGALTLLQVV----------DVP-GQVQPMVISPDKRHLYVGVR-P-----EFRVL 60 (330)
T ss_pred EEEEEcCCC-----CCEEEEEECCCCceeeeeEE----------ecC-CCCccEEECCCCCEEEEEEC-C-----CCcEE
Confidence 577776543 3578888864 466655441 111 111222222 445666433 2 13466
Q ss_pred EEECC-CCcEEEeeecCCCCCCceeeEEEEE-CC-EEEEEccccCCCCCcCcEEEEEcCCCc-e-EeccCCCCCCCCCcc
Q 005043 177 TFDTE-TECWSVVEAKGDIPVARSGHTVVRA-SS-VLILFGGEDGKRRKLNDLHMFDLKSLT-W-LPLHCTGTGPSPRSN 251 (717)
Q Consensus 177 ~yD~~-t~~W~~l~~~g~~P~~R~~hs~~~~-~~-~Lyv~GG~~~~~~~~~~v~~yD~~t~~-W-~~l~~~g~~P~~R~~ 251 (717)
.|++. ++.++.+.. .+.+-..+.++.. ++ .||+.. +. .+.+.+||+.++. . ..+. ..+....-
T Consensus 61 ~~~~~~~g~l~~~~~---~~~~~~p~~i~~~~~g~~l~v~~-~~-----~~~v~v~~~~~~g~~~~~~~---~~~~~~~~ 128 (330)
T PRK11028 61 SYRIADDGALTFAAE---SPLPGSPTHISTDHQGRFLFSAS-YN-----ANCVSVSPLDKDGIPVAPIQ---IIEGLEGC 128 (330)
T ss_pred EEEECCCCceEEeee---ecCCCCceEEEECCCCCEEEEEE-cC-----CCeEEEEEECCCCCCCCcee---eccCCCcc
Confidence 66664 556765542 1221111223333 34 566653 21 2567788875431 1 1121 12222223
Q ss_pred cEEEEE-CCcEEEEEcCCCCCCCCCeEEEEECCCC-cEEEeecC-CCCCCCCcceEEEEE--CCEEEEEecCCCCCccCe
Q 005043 252 HVAALY-DDKNLLIFGGSSKSKTLNDLYSLDFETM-IWTRIKIR-GFHPSPRAGCCGVLC--GTKWYIAGGGSRKKRHAE 326 (717)
Q Consensus 252 ~aa~~~-~~~~lyV~GG~~~~~~~ndv~~yd~~t~-~W~~v~~~-g~~P~~R~~~sav~~--~~~IyV~GG~~~~~~~~d 326 (717)
|.+++. +++.+|+..-. .+.|.+||+.+. ........ -..+.+..-+.++.. +..+|+....+ +.
T Consensus 129 ~~~~~~p~g~~l~v~~~~-----~~~v~v~d~~~~g~l~~~~~~~~~~~~g~~p~~~~~~pdg~~lyv~~~~~-----~~ 198 (330)
T PRK11028 129 HSANIDPDNRTLWVPCLK-----EDRIRLFTLSDDGHLVAQEPAEVTTVEGAGPRHMVFHPNQQYAYCVNELN-----SS 198 (330)
T ss_pred cEeEeCCCCCEEEEeeCC-----CCEEEEEEECCCCcccccCCCceecCCCCCCceEEECCCCCEEEEEecCC-----CE
Confidence 444444 34556664432 246999998763 22110000 000111111223333 34677765432 45
Q ss_pred EEEEECC--CCcEEEeec---CCCCCCCCCcceEEEEEEeCCCcEEEEEcCCCCCCCCeEEEEEccCC
Q 005043 327 TLIFDIL--KGEWSVAIT---SPSSSVTSNKGFTLVLVQHKEKDFLVAFGGIKKEPSNQVEVLSIEKN 389 (717)
Q Consensus 327 v~~yD~~--t~~W~~l~~---~p~~~~~~r~g~s~v~v~~~~~~~I~v~GG~~~~~~n~v~vyd~~~~ 389 (717)
+.+||+. +.+++.+.. .|...+.++ +...+.-++++.++|+... ..+.+.+|++..+
T Consensus 199 v~v~~~~~~~~~~~~~~~~~~~p~~~~~~~--~~~~i~~~pdg~~lyv~~~----~~~~I~v~~i~~~ 260 (330)
T PRK11028 199 VDVWQLKDPHGEIECVQTLDMMPADFSDTR--WAADIHITPDGRHLYACDR----TASLISVFSVSED 260 (330)
T ss_pred EEEEEEeCCCCCEEEEEEEecCCCcCCCCc--cceeEEECCCCCEEEEecC----CCCeEEEEEEeCC
Confidence 7777775 445544332 222222233 2222222345667777522 2347778877544
No 86
>PRK00178 tolB translocation protein TolB; Provisional
Probab=94.87 E-value=7.9 Score=43.45 Aligned_cols=143 Identities=10% Similarity=0.046 Sum_probs=76.5
Q ss_pred CcEEEEEcCCCceEeccCCCCCCCCCcccEEEEE-CCcEEEEEcCCCCCCCCCeEEEEECCCCcEEEeecCCCCCCCCcc
Q 005043 224 NDLHMFDLKSLTWLPLHCTGTGPSPRSNHVAALY-DDKNLLIFGGSSKSKTLNDLYSLDFETMIWTRIKIRGFHPSPRAG 302 (717)
Q Consensus 224 ~~v~~yD~~t~~W~~l~~~g~~P~~R~~~aa~~~-~~~~lyV~GG~~~~~~~ndv~~yd~~t~~W~~v~~~g~~P~~R~~ 302 (717)
..+|++|+.+++-..+. ..+. ........ +++.|++....++ ..++|++|+.++.++.+... +. ...
T Consensus 223 ~~l~~~~l~~g~~~~l~---~~~g--~~~~~~~SpDG~~la~~~~~~g---~~~Iy~~d~~~~~~~~lt~~---~~-~~~ 290 (430)
T PRK00178 223 PRIFVQNLDTGRREQIT---NFEG--LNGAPAWSPDGSKLAFVLSKDG---NPEIYVMDLASRQLSRVTNH---PA-IDT 290 (430)
T ss_pred CEEEEEECCCCCEEEcc---CCCC--CcCCeEECCCCCEEEEEEccCC---CceEEEEECCCCCeEEcccC---CC-CcC
Confidence 57999999998877765 2221 11112222 4454443322221 25799999999998877542 11 111
Q ss_pred eEEEEEC-CEEEEEecCCCCCccCeEEEEECCCCcEEEeecCCCCCCCCCcceEEEEEEeCCCcEEEEEcCCCCCCCCeE
Q 005043 303 CCGVLCG-TKWYIAGGGSRKKRHAETLIFDILKGEWSVAITSPSSSVTSNKGFTLVLVQHKEKDFLVAFGGIKKEPSNQV 381 (717)
Q Consensus 303 ~sav~~~-~~IyV~GG~~~~~~~~dv~~yD~~t~~W~~l~~~p~~~~~~r~g~s~v~v~~~~~~~I~v~GG~~~~~~n~v 381 (717)
.....-+ .+|++.....+ ...+|.+|+.+..++.+... .. ......+. +++..|+.....++ ...+
T Consensus 291 ~~~~spDg~~i~f~s~~~g---~~~iy~~d~~~g~~~~lt~~------~~-~~~~~~~S-pdg~~i~~~~~~~~--~~~l 357 (430)
T PRK00178 291 EPFWGKDGRTLYFTSDRGG---KPQIYKVNVNGGRAERVTFV------GN-YNARPRLS-ADGKTLVMVHRQDG--NFHV 357 (430)
T ss_pred CeEECCCCCEEEEEECCCC---CceEEEEECCCCCEEEeecC------CC-CccceEEC-CCCCEEEEEEccCC--ceEE
Confidence 1111223 45655543222 25799999999888876421 11 11122232 23445554443322 2368
Q ss_pred EEEEccCCcc
Q 005043 382 EVLSIEKNES 391 (717)
Q Consensus 382 ~vyd~~~~eW 391 (717)
+++|+.+.+.
T Consensus 358 ~~~dl~tg~~ 367 (430)
T PRK00178 358 AAQDLQRGSV 367 (430)
T ss_pred EEEECCCCCE
Confidence 9999887664
No 87
>cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases. The alignment model contains an 8-bladed beta-propeller.
Probab=94.85 E-value=9.7 Score=43.78 Aligned_cols=123 Identities=15% Similarity=0.126 Sum_probs=63.6
Q ss_pred EEEECCEEEEEeccCCCCCCceEEEEEECCCCc--EEEeeecCCC-CCC-ceeeEEEEEC-CEEEEEccccCCCCCcCcE
Q 005043 152 LISWGKKVLLVGGKTDSGSDRVSVWTFDTETEC--WSVVEAKGDI-PVA-RSGHTVVRAS-SVLILFGGEDGKRRKLNDL 226 (717)
Q Consensus 152 ~v~~~~~Iyv~GG~~~~~~~~~~v~~yD~~t~~--W~~l~~~g~~-P~~-R~~hs~~~~~-~~Lyv~GG~~~~~~~~~~v 226 (717)
-++.++++|+.... ..++.+|..+++ |+.-...... ..+ .....+++.+ +++|+... -..+
T Consensus 57 Pvv~~g~vy~~~~~-------g~l~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~g~~~~~~~~V~v~~~-------~g~v 122 (488)
T cd00216 57 PLVVDGDMYFTTSH-------SALFALDAATGKVLWRYDPKLPADRGCCDVVNRGVAYWDPRKVFFGTF-------DGRL 122 (488)
T ss_pred CEEECCEEEEeCCC-------CcEEEEECCCChhhceeCCCCCccccccccccCCcEEccCCeEEEecC-------CCeE
Confidence 35668999986542 258999988765 8764321100 000 0111234445 77776421 2468
Q ss_pred EEEEcCCCc--eEeccCCCCCCCCCcccEEEEECCcEEEEEcCCCCC----CCCCeEEEEECCCCc--EEEe
Q 005043 227 HMFDLKSLT--WLPLHCTGTGPSPRSNHVAALYDDKNLLIFGGSSKS----KTLNDLYSLDFETMI--WTRI 290 (717)
Q Consensus 227 ~~yD~~t~~--W~~l~~~g~~P~~R~~~aa~~~~~~~lyV~GG~~~~----~~~ndv~~yd~~t~~--W~~v 290 (717)
+.+|..+.+ |+.-......+......+.++.+ . ++++|..+.. .....++.||..+++ |+.-
T Consensus 123 ~AlD~~TG~~~W~~~~~~~~~~~~~i~ssP~v~~-~-~v~vg~~~~~~~~~~~~g~v~alD~~TG~~~W~~~ 192 (488)
T cd00216 123 VALDAETGKQVWKFGNNDQVPPGYTMTGAPTIVK-K-LVIIGSSGAEFFACGVRGALRAYDVETGKLLWRFY 192 (488)
T ss_pred EEEECCCCCEeeeecCCCCcCcceEecCCCEEEC-C-EEEEeccccccccCCCCcEEEEEECCCCceeeEee
Confidence 999988764 87543100000000122234444 4 3444533221 234579999997654 8754
No 88
>TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens.
Probab=94.84 E-value=8.9 Score=44.58 Aligned_cols=217 Identities=15% Similarity=0.160 Sum_probs=109.6
Q ss_pred EEEECCEEEEEeccCCCCCCceEEEEEECCCCc--EEEeeecC-CC-C---CCceeeEEEEECCEEEEEccccCCCCCcC
Q 005043 152 LISWGKKVLLVGGKTDSGSDRVSVWTFDTETEC--WSVVEAKG-DI-P---VARSGHTVVRASSVLILFGGEDGKRRKLN 224 (717)
Q Consensus 152 ~v~~~~~Iyv~GG~~~~~~~~~~v~~yD~~t~~--W~~l~~~g-~~-P---~~R~~hs~~~~~~~Lyv~GG~~~~~~~~~ 224 (717)
-++.++.||+.... ..++.+|..|++ |+.-.... .. + .......+++.+++||+.. .-.
T Consensus 65 Pvv~~g~vyv~s~~-------g~v~AlDa~TGk~lW~~~~~~~~~~~~~~~~~~~~rg~av~~~~v~v~t-------~dg 130 (527)
T TIGR03075 65 PLVVDGVMYVTTSY-------SRVYALDAKTGKELWKYDPKLPDDVIPVMCCDVVNRGVALYDGKVFFGT-------LDA 130 (527)
T ss_pred CEEECCEEEEECCC-------CcEEEEECCCCceeeEecCCCCcccccccccccccccceEECCEEEEEc-------CCC
Confidence 35668999986442 258999988765 87643110 01 0 0011223456678888642 124
Q ss_pred cEEEEEcCCCc--eEeccCCCCCCCC-CcccEEEEECCcEEEEEcCCCCCCCCCeEEEEECCCCc--EEEeecCCCC---
Q 005043 225 DLHMFDLKSLT--WLPLHCTGTGPSP-RSNHVAALYDDKNLLIFGGSSKSKTLNDLYSLDFETMI--WTRIKIRGFH--- 296 (717)
Q Consensus 225 ~v~~yD~~t~~--W~~l~~~g~~P~~-R~~~aa~~~~~~~lyV~GG~~~~~~~ndv~~yd~~t~~--W~~v~~~g~~--- 296 (717)
.++.+|..+.+ |+.-. +..... ....+-++.++. +|+-...........++.||.++++ |+.-...+..
T Consensus 131 ~l~ALDa~TGk~~W~~~~--~~~~~~~~~tssP~v~~g~-Vivg~~~~~~~~~G~v~AlD~~TG~~lW~~~~~p~~~~~~ 207 (527)
T TIGR03075 131 RLVALDAKTGKVVWSKKN--GDYKAGYTITAAPLVVKGK-VITGISGGEFGVRGYVTAYDAKTGKLVWRRYTVPGDMGYL 207 (527)
T ss_pred EEEEEECCCCCEEeeccc--ccccccccccCCcEEECCE-EEEeecccccCCCcEEEEEECCCCceeEeccCcCCCcccc
Confidence 58999998775 76532 111111 112233455665 5553222222234578999998765 6643321110
Q ss_pred ----------C---------CCCcc----eEEEEE--CCEEEEEecC----CC------CCccCeEEEEECCCCc--EEE
Q 005043 297 ----------P---------SPRAG----CCGVLC--GTKWYIAGGG----SR------KKRHAETLIFDILKGE--WSV 339 (717)
Q Consensus 297 ----------P---------~~R~~----~sav~~--~~~IyV~GG~----~~------~~~~~dv~~yD~~t~~--W~~ 339 (717)
| ..+.+ ..+++. .+.||+--|. .. +.+.+.+..+|++|.+ |..
T Consensus 208 ~~~~~~~~~~~~~~tw~~~~~~~gg~~~W~~~s~D~~~~lvy~~tGnp~p~~~~~r~gdnl~~~s~vAld~~TG~~~W~~ 287 (527)
T TIGR03075 208 DKADKPVGGEPGAKTWPGDAWKTGGGATWGTGSYDPETNLIYFGTGNPSPWNSHLRPGDNLYTSSIVARDPDTGKIKWHY 287 (527)
T ss_pred cccccccccccccCCCCCCccccCCCCccCceeEcCCCCeEEEeCCCCCCCCCCCCCCCCccceeEEEEccccCCEEEee
Confidence 0 00111 112222 2567765543 11 2345689999999874 655
Q ss_pred eecCCCCCCCCCcceEEEEEEeC-CCc--EEEEEcCCCCCCCCeEEEEEccCCc
Q 005043 340 AITSPSSSVTSNKGFTLVLVQHK-EKD--FLVAFGGIKKEPSNQVEVLSIEKNE 390 (717)
Q Consensus 340 l~~~p~~~~~~r~g~s~v~v~~~-~~~--~I~v~GG~~~~~~n~v~vyd~~~~e 390 (717)
-. .+...-..-.....+++..+ ++. .+++.+..++ .++++|..+.+
T Consensus 288 Q~-~~~D~wD~d~~~~p~l~d~~~~G~~~~~v~~~~K~G----~~~vlDr~tG~ 336 (527)
T TIGR03075 288 QT-TPHDEWDYDGVNEMILFDLKKDGKPRKLLAHADRNG----FFYVLDRTNGK 336 (527)
T ss_pred eC-CCCCCccccCCCCcEEEEeccCCcEEEEEEEeCCCc----eEEEEECCCCc
Confidence 32 22222112122333444321 122 4666666544 57999988876
No 89
>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein. Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.
Probab=94.84 E-value=5.7 Score=41.06 Aligned_cols=232 Identities=18% Similarity=0.202 Sum_probs=106.0
Q ss_pred CEEEEEcccCCCCCcccEEEEEcCCCceEEccccccCCCCCCCCCCCcccceEEEEE--CCEEEEEeccCCCCCCceEEE
Q 005043 99 NKMIVVGGESGNGLLDDVQVLNFDRFSWTAASSKLYLSPSSLPLKIPACRGHSLISW--GKKVLLVGGKTDSGSDRVSVW 176 (717)
Q Consensus 99 ~~lyV~GG~~~~~~~~~v~~yd~~t~~W~~l~~~~~~~~~~~~~~~p~r~~hs~v~~--~~~Iyv~GG~~~~~~~~~~v~ 176 (717)
..+|+.++.+ +.+.+||+.+......-+. . ... ..++.. ++.+|+.++.. ..+.
T Consensus 43 ~~l~~~~~~~-----~~v~~~d~~~~~~~~~~~~---------~-~~~---~~~~~~~~g~~l~~~~~~~------~~l~ 98 (300)
T TIGR03866 43 KLLYVCASDS-----DTIQVIDLATGEVIGTLPS---------G-PDP---ELFALHPNGKILYIANEDD------NLVT 98 (300)
T ss_pred CEEEEEECCC-----CeEEEEECCCCcEEEeccC---------C-CCc---cEEEECCCCCEEEEEcCCC------CeEE
Confidence 4577776533 3588999988765432110 0 111 122222 34566665421 2589
Q ss_pred EEECCCCcEEEeeecCCCCCCceeeEEEE-ECCEEEEEccccCCCCCcCcEEEEEcCCCceEeccCCCCCCCCCcccEEE
Q 005043 177 TFDTETECWSVVEAKGDIPVARSGHTVVR-ASSVLILFGGEDGKRRKLNDLHMFDLKSLTWLPLHCTGTGPSPRSNHVAA 255 (717)
Q Consensus 177 ~yD~~t~~W~~l~~~g~~P~~R~~hs~~~-~~~~Lyv~GG~~~~~~~~~~v~~yD~~t~~W~~l~~~g~~P~~R~~~aa~ 255 (717)
+||+.+..-... .+.....++++. -++.+++++..+. +.++.||..+..-......+..| .+.+.
T Consensus 99 ~~d~~~~~~~~~-----~~~~~~~~~~~~~~dg~~l~~~~~~~-----~~~~~~d~~~~~~~~~~~~~~~~----~~~~~ 164 (300)
T TIGR03866 99 VIDIETRKVLAE-----IPVGVEPEGMAVSPDGKIVVNTSETT-----NMAHFIDTKTYEIVDNVLVDQRP----RFAEF 164 (300)
T ss_pred EEECCCCeEEeE-----eeCCCCcceEEECCCCCEEEEEecCC-----CeEEEEeCCCCeEEEEEEcCCCc----cEEEE
Confidence 999987542211 111111123333 3466666654322 23566787765432211111111 22222
Q ss_pred EECCcEEEEEcCCCCCCCCCeEEEEECCCCcEEE-eecC--CCCCCCCcceEEEEE--CCEEEEEecCCCCCccCeEEEE
Q 005043 256 LYDDKNLLIFGGSSKSKTLNDLYSLDFETMIWTR-IKIR--GFHPSPRAGCCGVLC--GTKWYIAGGGSRKKRHAETLIF 330 (717)
Q Consensus 256 ~~~~~~lyV~GG~~~~~~~ndv~~yd~~t~~W~~-v~~~--g~~P~~R~~~sav~~--~~~IyV~GG~~~~~~~~dv~~y 330 (717)
.-+++.+++ ++... +.+..||+.+..... +... +..+.......++.. +..+|+..+.. +.+.+|
T Consensus 165 s~dg~~l~~-~~~~~----~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~i~~s~dg~~~~~~~~~~-----~~i~v~ 234 (300)
T TIGR03866 165 TADGKELWV-SSEIG----GTVSVIDVATRKVIKKITFEIPGVHPEAVQPVGIKLTKDGKTAFVALGPA-----NRVAVV 234 (300)
T ss_pred CCCCCEEEE-EcCCC----CEEEEEEcCcceeeeeeeecccccccccCCccceEECCCCCEEEEEcCCC-----CeEEEE
Confidence 334553444 43211 358999998765422 2211 111111111222222 34556644422 358899
Q ss_pred ECCCCcEEEeecCCCCCCCCCcceEEEEEEeCCCcEEEEEcCCCCCCCCeEEEEEccCCc
Q 005043 331 DILKGEWSVAITSPSSSVTSNKGFTLVLVQHKEKDFLVAFGGIKKEPSNQVEVLSIEKNE 390 (717)
Q Consensus 331 D~~t~~W~~l~~~p~~~~~~r~g~s~v~v~~~~~~~I~v~GG~~~~~~n~v~vyd~~~~e 390 (717)
|..+.+ .+..... ...-. .+.+. +++..||+..+. .+.|.+||+.+.+
T Consensus 235 d~~~~~--~~~~~~~----~~~~~-~~~~~-~~g~~l~~~~~~----~~~i~v~d~~~~~ 282 (300)
T TIGR03866 235 DAKTYE--VLDYLLV----GQRVW-QLAFT-PDEKYLLTTNGV----SNDVSVIDVAALK 282 (300)
T ss_pred ECCCCc--EEEEEEe----CCCcc-eEEEC-CCCCEEEEEcCC----CCeEEEEECCCCc
Confidence 987643 3321110 11111 22232 234455544343 2369999988866
No 90
>PRK02889 tolB translocation protein TolB; Provisional
Probab=94.81 E-value=8.9 Score=43.19 Aligned_cols=145 Identities=11% Similarity=0.044 Sum_probs=76.6
Q ss_pred eEEEEEECCCCcEEEeeecCCCCCCceeeEEEE-EC-CEEEEEccccCCCCCcCcEEEEEcCCCceEeccCCCCCCCCCc
Q 005043 173 VSVWTFDTETECWSVVEAKGDIPVARSGHTVVR-AS-SVLILFGGEDGKRRKLNDLHMFDLKSLTWLPLHCTGTGPSPRS 250 (717)
Q Consensus 173 ~~v~~yD~~t~~W~~l~~~g~~P~~R~~hs~~~-~~-~~Lyv~GG~~~~~~~~~~v~~yD~~t~~W~~l~~~g~~P~~R~ 250 (717)
..+|++|+.+++=..+.. .+. ...+... -+ .+|++....++ ..++|.+|..+.....+.. .. ...
T Consensus 220 ~~I~~~dl~~g~~~~l~~---~~g--~~~~~~~SPDG~~la~~~~~~g----~~~Iy~~d~~~~~~~~lt~---~~-~~~ 286 (427)
T PRK02889 220 PVVYVHDLATGRRRVVAN---FKG--SNSAPAWSPDGRTLAVALSRDG----NSQIYTVNADGSGLRRLTQ---SS-GID 286 (427)
T ss_pred cEEEEEECCCCCEEEeec---CCC--CccceEECCCCCEEEEEEccCC----CceEEEEECCCCCcEECCC---CC-CCC
Confidence 369999998886555542 221 1112222 23 35554433222 2679999998877776642 11 111
Q ss_pred ccEEEEECCcEEEEEcCCCCCCCCCeEEEEECCCCcEEEeecCCCCCCCCcceEE-EEECC-EEEEEecCCCCCccCeEE
Q 005043 251 NHVAALYDDKNLLIFGGSSKSKTLNDLYSLDFETMIWTRIKIRGFHPSPRAGCCG-VLCGT-KWYIAGGGSRKKRHAETL 328 (717)
Q Consensus 251 ~~aa~~~~~~~lyV~GG~~~~~~~ndv~~yd~~t~~W~~v~~~g~~P~~R~~~sa-v~~~~-~IyV~GG~~~~~~~~dv~ 328 (717)
......-+++.|++.+...+ ...+|.++..+...+.+...+ ...... ..-++ .|+......+ ...++
T Consensus 287 ~~~~wSpDG~~l~f~s~~~g---~~~Iy~~~~~~g~~~~lt~~g-----~~~~~~~~SpDG~~Ia~~s~~~g---~~~I~ 355 (427)
T PRK02889 287 TEPFFSPDGRSIYFTSDRGG---APQIYRMPASGGAAQRVTFTG-----SYNTSPRISPDGKLLAYISRVGG---AFKLY 355 (427)
T ss_pred cCeEEcCCCCEEEEEecCCC---CcEEEEEECCCCceEEEecCC-----CCcCceEECCCCCEEEEEEccCC---cEEEE
Confidence 12222334554444332221 247999998888887776431 111111 22244 4444433222 13699
Q ss_pred EEECCCCcEEEee
Q 005043 329 IFDILKGEWSVAI 341 (717)
Q Consensus 329 ~yD~~t~~W~~l~ 341 (717)
++|+.+...+.+.
T Consensus 356 v~d~~~g~~~~lt 368 (427)
T PRK02889 356 VQDLATGQVTALT 368 (427)
T ss_pred EEECCCCCeEEcc
Confidence 9999988877764
No 91
>PLN00033 photosystem II stability/assembly factor; Provisional
Probab=94.79 E-value=8.7 Score=42.97 Aligned_cols=220 Identities=14% Similarity=0.135 Sum_probs=106.8
Q ss_pred CCCCeEEeeecCCCCCCc--ceeEEEEECCEEEEEcccCCCCCcccEEEEEcCCCceEEccccccCCCCCCCCCCCcccc
Q 005043 72 NSENWMVLSIAGDKPIPR--FNHAAAVIGNKMIVVGGESGNGLLDDVQVLNFDRFSWTAASSKLYLSPSSLPLKIPACRG 149 (717)
Q Consensus 72 ~s~~W~~l~~~g~~P~~R--~~haav~~~~~lyV~GG~~~~~~~~~v~~yd~~t~~W~~l~~~~~~~~~~~~~~~p~r~~ 149 (717)
-...|............+ ...+....++..|++|-.. -++.=.-...+|+.++.. ...|.. .
T Consensus 118 GG~tW~~~~~~~~~~~~~~~~l~~v~f~~~~g~~vG~~G------~il~T~DgG~tW~~~~~~---------~~~p~~-~ 181 (398)
T PLN00033 118 GGKTWVPRSIPSAEDEDFNYRFNSISFKGKEGWIIGKPA------ILLHTSDGGETWERIPLS---------PKLPGE-P 181 (398)
T ss_pred CCCCceECccCcccccccccceeeeEEECCEEEEEcCce------EEEEEcCCCCCceECccc---------cCCCCC-c
Confidence 456898864211111111 2344455677888886321 122222234699988642 011111 2
Q ss_pred eEEEEE-CCEEEEEeccCCCCCCceEEEEEECCCCcEEEeeecC-CCCCC--------------ceeeEEEE-ECCEEEE
Q 005043 150 HSLISW-GKKVLLVGGKTDSGSDRVSVWTFDTETECWSVVEAKG-DIPVA--------------RSGHTVVR-ASSVLIL 212 (717)
Q Consensus 150 hs~v~~-~~~Iyv~GG~~~~~~~~~~v~~yD~~t~~W~~l~~~g-~~P~~--------------R~~hs~~~-~~~~Lyv 212 (717)
+..... ++.++++|... .+++-+-...+|+.+.... ..+.. -....+.. -++.+++
T Consensus 182 ~~i~~~~~~~~~ivg~~G-------~v~~S~D~G~tW~~~~~~t~~~~l~~~~~s~~~g~~~y~Gsf~~v~~~~dG~~~~ 254 (398)
T PLN00033 182 VLIKATGPKSAEMVTDEG-------AIYVTSNAGRNWKAAVEETVSATLNRTVSSGISGASYYTGTFSTVNRSPDGDYVA 254 (398)
T ss_pred eEEEEECCCceEEEeccc-------eEEEECCCCCCceEcccccccccccccccccccccceeccceeeEEEcCCCCEEE
Confidence 333344 45677877432 3676666677899762110 00111 11112222 2345555
Q ss_pred EccccCCCCCcCcEEEE-EcCCCceEeccCCCCCCCCCcccEEEEECCcEEEEEcCCCCCCCCCeEEEEECCCCcE----
Q 005043 213 FGGEDGKRRKLNDLHMF-DLKSLTWLPLHCTGTGPSPRSNHVAALYDDKNLLIFGGSSKSKTLNDLYSLDFETMIW---- 287 (717)
Q Consensus 213 ~GG~~~~~~~~~~v~~y-D~~t~~W~~l~~~g~~P~~R~~~aa~~~~~~~lyV~GG~~~~~~~ndv~~yd~~t~~W---- 287 (717)
+|-. ..+++- |.....|+.+. .|.++...++....+..+++.|..+ .++.-+.....|
T Consensus 255 vg~~-------G~~~~s~d~G~~~W~~~~----~~~~~~l~~v~~~~dg~l~l~g~~G------~l~~S~d~G~~~~~~~ 317 (398)
T PLN00033 255 VSSR-------GNFYLTWEPGQPYWQPHN----RASARRIQNMGWRADGGLWLLTRGG------GLYVSKGTGLTEEDFD 317 (398)
T ss_pred EECC-------ccEEEecCCCCcceEEec----CCCccceeeeeEcCCCCEEEEeCCc------eEEEecCCCCcccccc
Confidence 5421 224433 33333489884 4555555555555454478777543 244444444444
Q ss_pred -EEeecCCCCCCCCcceE-EEEE-CCEEEEEecCCCCCccCeEEEEECCCCcEEEee
Q 005043 288 -TRIKIRGFHPSPRAGCC-GVLC-GTKWYIAGGGSRKKRHAETLIFDILKGEWSVAI 341 (717)
Q Consensus 288 -~~v~~~g~~P~~R~~~s-av~~-~~~IyV~GG~~~~~~~~dv~~yD~~t~~W~~l~ 341 (717)
..+.. +..+.... +... ++.+++.|... -++.-.....+|+...
T Consensus 318 f~~~~~----~~~~~~l~~v~~~~d~~~~a~G~~G------~v~~s~D~G~tW~~~~ 364 (398)
T PLN00033 318 FEEADI----KSRGFGILDVGYRSKKEAWAAGGSG------ILLRSTDGGKSWKRDK 364 (398)
T ss_pred eeeccc----CCCCcceEEEEEcCCCcEEEEECCC------cEEEeCCCCcceeEcc
Confidence 44322 22333333 3333 67888888642 2555556778999975
No 92
>TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens.
Probab=94.61 E-value=8.4 Score=44.80 Aligned_cols=129 Identities=14% Similarity=0.082 Sum_probs=70.1
Q ss_pred eEEEEECCEEEEEcccCCCCCcccEEEEEcCCC--ceEEccccccCCCCCCCCCCCcccceEEEEECCEEEEEeccCCCC
Q 005043 92 HAAAVIGNKMIVVGGESGNGLLDDVQVLNFDRF--SWTAASSKLYLSPSSLPLKIPACRGHSLISWGKKVLLVGGKTDSG 169 (717)
Q Consensus 92 haav~~~~~lyV~GG~~~~~~~~~v~~yd~~t~--~W~~l~~~~~~~~~~~~~~~p~r~~hs~v~~~~~Iyv~GG~~~~~ 169 (717)
.+-++.++.||+.... +.++.+|..+. .|+.-........ +.........+.++.+++||+...
T Consensus 63 stPvv~~g~vyv~s~~------g~v~AlDa~TGk~lW~~~~~~~~~~~---~~~~~~~~~rg~av~~~~v~v~t~----- 128 (527)
T TIGR03075 63 SQPLVVDGVMYVTTSY------SRVYALDAKTGKELWKYDPKLPDDVI---PVMCCDVVNRGVALYDGKVFFGTL----- 128 (527)
T ss_pred cCCEEECCEEEEECCC------CcEEEEECCCCceeeEecCCCCcccc---cccccccccccceEECCEEEEEcC-----
Confidence 3445678999986542 25899998875 6876543100000 000000012234566888886432
Q ss_pred CCceEEEEEECCCCc--EEEeeecCCCCC-CceeeEEEEECCEEEEEccccCCCCCcCcEEEEEcCCCc--eEec
Q 005043 170 SDRVSVWTFDTETEC--WSVVEAKGDIPV-ARSGHTVVRASSVLILFGGEDGKRRKLNDLHMFDLKSLT--WLPL 239 (717)
Q Consensus 170 ~~~~~v~~yD~~t~~--W~~l~~~g~~P~-~R~~hs~~~~~~~Lyv~GG~~~~~~~~~~v~~yD~~t~~--W~~l 239 (717)
...++.+|..|++ |+.-.. .... .....+-++.++.||+-...... .....++.||..+++ |+.-
T Consensus 129 --dg~l~ALDa~TGk~~W~~~~~--~~~~~~~~tssP~v~~g~Vivg~~~~~~-~~~G~v~AlD~~TG~~lW~~~ 198 (527)
T TIGR03075 129 --DARLVALDAKTGKVVWSKKNG--DYKAGYTITAAPLVVKGKVITGISGGEF-GVRGYVTAYDAKTGKLVWRRY 198 (527)
T ss_pred --CCEEEEEECCCCCEEeecccc--cccccccccCCcEEECCEEEEeeccccc-CCCcEEEEEECCCCceeEecc
Confidence 1269999998876 875421 1111 11223345567877764322111 134578999998875 7644
No 93
>cd00094 HX Hemopexin-like repeats.; Hemopexin is a heme-binding protein that transports heme to the liver. Hemopexin-like repeats occur in vitronectin and some matrix metalloproteinases family (matrixins). The HX repeats of some matrixins bind tissue inhibitor of metalloproteinases (TIMPs). This CD contains 4 instances of the repeat.
Probab=94.43 E-value=3.4 Score=41.26 Aligned_cols=152 Identities=14% Similarity=0.155 Sum_probs=78.8
Q ss_pred EEEEECCEEEEEeccCCCCCCceEEEEEECCCCcE--EEeeec-CCCCCCceeeEEEEEC-CEEEEEccccCCCCCcCcE
Q 005043 151 SLISWGKKVLLVGGKTDSGSDRVSVWTFDTETECW--SVVEAK-GDIPVARSGHTVVRAS-SVLILFGGEDGKRRKLNDL 226 (717)
Q Consensus 151 s~v~~~~~Iyv~GG~~~~~~~~~~v~~yD~~t~~W--~~l~~~-g~~P~~R~~hs~~~~~-~~Lyv~GG~~~~~~~~~~v 226 (717)
+++...+.+|+|-|. .+|+++...... ..+... +.+|. ....+..... +++|+|-| +..
T Consensus 11 A~~~~~g~~y~FkG~--------~~w~~~~~~~~~~p~~I~~~w~~~p~-~IDAa~~~~~~~~~yfFkg--------~~y 73 (194)
T cd00094 11 AVTTLRGELYFFKGR--------YFWRLSPGKPPGSPFLISSFWPSLPS-PVDAAFERPDTGKIYFFKG--------DKY 73 (194)
T ss_pred eEEEeCCEEEEEeCC--------EEEEEeCCCCCCCCeEhhhhCCCCCC-CccEEEEECCCCEEEEECC--------CEE
Confidence 444556999999774 488888652211 111110 11232 1222222223 79999955 357
Q ss_pred EEEEcCCCceEeccCC-C-CCCC--CCcccEEEEEC-CcEEEEEcCCCCCCCCCeEEEEECCCCcEEE-----eec-CCC
Q 005043 227 HMFDLKSLTWLPLHCT-G-TGPS--PRSNHVAALYD-DKNLLIFGGSSKSKTLNDLYSLDFETMIWTR-----IKI-RGF 295 (717)
Q Consensus 227 ~~yD~~t~~W~~l~~~-g-~~P~--~R~~~aa~~~~-~~~lyV~GG~~~~~~~ndv~~yd~~t~~W~~-----v~~-~g~ 295 (717)
|+||..+..+...... . ..|. .... ++.... ++.+|+|.|. ..|+||...++... +.. -..
T Consensus 74 w~~~~~~~~~~~Pk~i~~~~~~~~~~~iD-AA~~~~~~~~~yfFkg~-------~y~ry~~~~~~v~~~yP~~i~~~w~g 145 (194)
T cd00094 74 WVYTGKNLEPGYPKPISDLGFPPTVKQID-AALRWPDNGKTYFFKGD-------KYWRYDEKTQKMDPGYPKLIETDFPG 145 (194)
T ss_pred EEEcCcccccCCCcchhhcCCCCCCCCcc-EEEEEcCCCEEEEEeCC-------EEEEEeCCCccccCCCCcchhhcCCC
Confidence 8887654222211100 0 1121 2223 333333 4459999883 58899876554321 110 001
Q ss_pred CCCCCcceEEEEEC-CEEEEEecCCCCCccCeEEEEECCCCc
Q 005043 296 HPSPRAGCCGVLCG-TKWYIAGGGSRKKRHAETLIFDILKGE 336 (717)
Q Consensus 296 ~P~~R~~~sav~~~-~~IyV~GG~~~~~~~~dv~~yD~~t~~ 336 (717)
.| ..-.++.... +++|+|-| +..|.||..+.+
T Consensus 146 ~p--~~idaa~~~~~~~~yfF~g-------~~y~~~d~~~~~ 178 (194)
T cd00094 146 VP--DKVDAAFRWLDGYYYFFKG-------DQYWRFDPRSKE 178 (194)
T ss_pred cC--CCcceeEEeCCCcEEEEEC-------CEEEEEeCccce
Confidence 12 2223344444 89999998 569999998776
No 94
>PRK04792 tolB translocation protein TolB; Provisional
Probab=94.36 E-value=11 Score=42.97 Aligned_cols=187 Identities=15% Similarity=0.118 Sum_probs=95.1
Q ss_pred ccEEEEEcCCCceEEccccccCCCCCCCCCCCcccc-eEEEEECCEEEEEeccCCCCCCceEEEEEECCCCcEEEeeecC
Q 005043 114 DDVQVLNFDRFSWTAASSKLYLSPSSLPLKIPACRG-HSLISWGKKVLLVGGKTDSGSDRVSVWTFDTETECWSVVEAKG 192 (717)
Q Consensus 114 ~~v~~yd~~t~~W~~l~~~~~~~~~~~~~~~p~r~~-hs~v~~~~~Iyv~GG~~~~~~~~~~v~~yD~~t~~W~~l~~~g 192 (717)
..+|++|+.+..-..+... +.... .+....++.|++....+ ...++|.+|+.++..+.+....
T Consensus 242 ~~L~~~dl~tg~~~~lt~~------------~g~~~~~~wSPDG~~La~~~~~~----g~~~Iy~~dl~tg~~~~lt~~~ 305 (448)
T PRK04792 242 AEIFVQDIYTQVREKVTSF------------PGINGAPRFSPDGKKLALVLSKD----GQPEIYVVDIATKALTRITRHR 305 (448)
T ss_pred cEEEEEECCCCCeEEecCC------------CCCcCCeeECCCCCEEEEEEeCC----CCeEEEEEECCCCCeEECccCC
Confidence 4688899888776655431 11111 11112244565553322 1247999999999888775311
Q ss_pred CCCCCceeeEEEEECC-EEEEEccccCCCCCcCcEEEEEcCCCceEeccCCCCCCCCCcccEEEEECCcEEEEEcCCCCC
Q 005043 193 DIPVARSGHTVVRASS-VLILFGGEDGKRRKLNDLHMFDLKSLTWLPLHCTGTGPSPRSNHVAALYDDKNLLIFGGSSKS 271 (717)
Q Consensus 193 ~~P~~R~~hs~~~~~~-~Lyv~GG~~~~~~~~~~v~~yD~~t~~W~~l~~~g~~P~~R~~~aa~~~~~~~lyV~GG~~~~ 271 (717)
.........-++ .|++.....+ ...+|.+|+.++++..+...+.. .......-+++.|++.+.. ..
T Consensus 306 ----~~~~~p~wSpDG~~I~f~s~~~g----~~~Iy~~dl~~g~~~~Lt~~g~~----~~~~~~SpDG~~l~~~~~~-~g 372 (448)
T PRK04792 306 ----AIDTEPSWHPDGKSLIFTSERGG----KPQIYRVNLASGKVSRLTFEGEQ----NLGGSITPDGRSMIMVNRT-NG 372 (448)
T ss_pred ----CCccceEECCCCCEEEEEECCCC----CceEEEEECCCCCEEEEecCCCC----CcCeeECCCCCEEEEEEec-CC
Confidence 111111112233 4554432222 25799999999999887522211 1112233355545554332 21
Q ss_pred CCCCeEEEEECCCCcEEEeecCCCCCCCCcceEEEEECCEEEEEecCCCCCccCeEEEEECCCCcEEE
Q 005043 272 KTLNDLYSLDFETMIWTRIKIRGFHPSPRAGCCGVLCGTKWYIAGGGSRKKRHAETLIFDILKGEWSV 339 (717)
Q Consensus 272 ~~~ndv~~yd~~t~~W~~v~~~g~~P~~R~~~sav~~~~~IyV~GG~~~~~~~~dv~~yD~~t~~W~~ 339 (717)
...++.+|+.++..+.+.... ... ..+ ..-+++.+++....+. ...+++++.+ ..+..
T Consensus 373 --~~~I~~~dl~~g~~~~lt~~~---~d~-~ps-~spdG~~I~~~~~~~g--~~~l~~~~~~-G~~~~ 430 (448)
T PRK04792 373 --KFNIARQDLETGAMQVLTSTR---LDE-SPS-VAPNGTMVIYSTTYQG--KQVLAAVSID-GRFKA 430 (448)
T ss_pred --ceEEEEEECCCCCeEEccCCC---CCC-Cce-ECCCCCEEEEEEecCC--ceEEEEEECC-CCceE
Confidence 246999999999887775421 111 111 2224444444332221 2357788874 44444
No 95
>PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A ....
Probab=94.35 E-value=8.2 Score=43.04 Aligned_cols=255 Identities=11% Similarity=0.048 Sum_probs=128.9
Q ss_pred CCEEEEEcccCCCCCcccEEEEEcCCCceEEccccccCCCCCCCCCCCcccceEEEEEC-CEEEEEeccCCCCC-----C
Q 005043 98 GNKMIVVGGESGNGLLDDVQVLNFDRFSWTAASSKLYLSPSSLPLKIPACRGHSLISWG-KKVLLVGGKTDSGS-----D 171 (717)
Q Consensus 98 ~~~lyV~GG~~~~~~~~~v~~yd~~t~~W~~l~~~~~~~~~~~~~~~p~r~~hs~v~~~-~~Iyv~GG~~~~~~-----~ 171 (717)
+++.++++=..+..-...++++|+.++....-. .+...+..++..+ ++.+++........ .
T Consensus 134 dg~~la~~~s~~G~e~~~l~v~Dl~tg~~l~d~-------------i~~~~~~~~~W~~d~~~~~y~~~~~~~~~~~~~~ 200 (414)
T PF02897_consen 134 DGKRLAYSLSDGGSEWYTLRVFDLETGKFLPDG-------------IENPKFSSVSWSDDGKGFFYTRFDEDQRTSDSGY 200 (414)
T ss_dssp TSSEEEEEEEETTSSEEEEEEEETTTTEEEEEE-------------EEEEESEEEEECTTSSEEEEEECSTTTSS-CCGC
T ss_pred CCCEEEEEecCCCCceEEEEEEECCCCcCcCCc-------------ccccccceEEEeCCCCEEEEEEeCcccccccCCC
Confidence 466666654333333457899999998543322 1122222234433 35555555443222 2
Q ss_pred ceEEEEEECCCCcEE--EeeecCCCCCCc--eeeEEEEECCEEEEEccccCCCCCcCcEEEEEcCCC-----ceEeccCC
Q 005043 172 RVSVWTFDTETECWS--VVEAKGDIPVAR--SGHTVVRASSVLILFGGEDGKRRKLNDLHMFDLKSL-----TWLPLHCT 242 (717)
Q Consensus 172 ~~~v~~yD~~t~~W~--~l~~~g~~P~~R--~~hs~~~~~~~Lyv~GG~~~~~~~~~~v~~yD~~t~-----~W~~l~~~ 242 (717)
...|+++...+..-. .+-. .+... +......-+++.+++.-.... . .+++|.+|.... .|..+..
T Consensus 201 ~~~v~~~~~gt~~~~d~lvfe---~~~~~~~~~~~~~s~d~~~l~i~~~~~~-~-~s~v~~~d~~~~~~~~~~~~~l~~- 274 (414)
T PF02897_consen 201 PRQVYRHKLGTPQSEDELVFE---EPDEPFWFVSVSRSKDGRYLFISSSSGT-S-ESEVYLLDLDDGGSPDAKPKLLSP- 274 (414)
T ss_dssp CEEEEEEETTS-GGG-EEEEC----TTCTTSEEEEEE-TTSSEEEEEEESSS-S-EEEEEEEECCCTTTSS-SEEEEEE-
T ss_pred CcEEEEEECCCChHhCeeEEe---ecCCCcEEEEEEecCcccEEEEEEEccc-c-CCeEEEEeccccCCCcCCcEEEeC-
Confidence 568999998877543 2221 22222 222222233433333222211 1 378999999875 7887741
Q ss_pred CCCCCCCcccEEEEECCcEEEEEcCCCCCCCCCeEEEEECCCCc---EEEeecCCCCCCC-CcceEEEEECCEEEEEecC
Q 005043 243 GTGPSPRSNHVAALYDDKNLLIFGGSSKSKTLNDLYSLDFETMI---WTRIKIRGFHPSP-RAGCCGVLCGTKWYIAGGG 318 (717)
Q Consensus 243 g~~P~~R~~~aa~~~~~~~lyV~GG~~~~~~~ndv~~yd~~t~~---W~~v~~~g~~P~~-R~~~sav~~~~~IyV~GG~ 318 (717)
+..-..+.+...++. +|+.-.. ......+..+++.+.. |..+-.. +.. ..-..+...+++|++.-=.
T Consensus 275 ---~~~~~~~~v~~~~~~-~yi~Tn~--~a~~~~l~~~~l~~~~~~~~~~~l~~---~~~~~~l~~~~~~~~~Lvl~~~~ 345 (414)
T PF02897_consen 275 ---REDGVEYYVDHHGDR-LYILTND--DAPNGRLVAVDLADPSPAEWWTVLIP---EDEDVSLEDVSLFKDYLVLSYRE 345 (414)
T ss_dssp ---SSSS-EEEEEEETTE-EEEEE-T--T-TT-EEEEEETTSTSGGGEEEEEE-----SSSEEEEEEEEETTEEEEEEEE
T ss_pred ---CCCceEEEEEccCCE-EEEeeCC--CCCCcEEEEecccccccccceeEEcC---CCCceeEEEEEEECCEEEEEEEE
Confidence 122222233334555 7776653 2334578999998765 7743221 222 2334445568888877643
Q ss_pred CCCCccCeEEEEECC-CCcEEEeecCCCCCCCCCcceEEEEE-EeCCCcEEEEEcCCCCCCCCeEEEEEccCCccc
Q 005043 319 SRKKRHAETLIFDIL-KGEWSVAITSPSSSVTSNKGFTLVLV-QHKEKDFLVAFGGIKKEPSNQVEVLSIEKNESS 392 (717)
Q Consensus 319 ~~~~~~~dv~~yD~~-t~~W~~l~~~p~~~~~~r~g~s~v~v-~~~~~~~I~v~GG~~~~~~n~v~vyd~~~~eW~ 392 (717)
+. ...+.+||+. +..-..++. +-.|...... ...++...|.+.|+..- ..++.||+.+++..
T Consensus 346 ~~---~~~l~v~~~~~~~~~~~~~~-------p~~g~v~~~~~~~~~~~~~~~~ss~~~P--~~~y~~d~~t~~~~ 409 (414)
T PF02897_consen 346 NG---SSRLRVYDLDDGKESREIPL-------PEAGSVSGVSGDFDSDELRFSYSSFTTP--PTVYRYDLATGELT 409 (414)
T ss_dssp TT---EEEEEEEETT-TEEEEEEES-------SSSSEEEEEES-TT-SEEEEEEEETTEE--EEEEEEETTTTCEE
T ss_pred CC---ccEEEEEECCCCcEEeeecC-------CcceEEeccCCCCCCCEEEEEEeCCCCC--CEEEEEECCCCCEE
Confidence 33 3578999998 443333331 1122111111 12334555566666433 38999999998843
No 96
>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB. The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.
Probab=94.32 E-value=8.9 Score=42.54 Aligned_cols=147 Identities=13% Similarity=0.105 Sum_probs=76.8
Q ss_pred ccEEEEEcCCCceEEccccccCCCCCCCCCCCcccceEEEEE-CCEEEEEeccCCCCCCceEEEEEECCCCcEEEeeecC
Q 005043 114 DDVQVLNFDRFSWTAASSKLYLSPSSLPLKIPACRGHSLISW-GKKVLLVGGKTDSGSDRVSVWTFDTETECWSVVEAKG 192 (717)
Q Consensus 114 ~~v~~yd~~t~~W~~l~~~~~~~~~~~~~~~p~r~~hs~v~~-~~~Iyv~GG~~~~~~~~~~v~~yD~~t~~W~~l~~~g 192 (717)
..++++|+.+.....+... ..........- ++.|++..... ...++|.+|+.+.....+....
T Consensus 214 ~~i~v~d~~~g~~~~~~~~------------~~~~~~~~~spDg~~l~~~~~~~----~~~~i~~~d~~~~~~~~l~~~~ 277 (417)
T TIGR02800 214 PEIYVQDLATGQREKVASF------------PGMNGAPAFSPDGSKLAVSLSKD----GNPDIYVMDLDGKQLTRLTNGP 277 (417)
T ss_pred cEEEEEECCCCCEEEeecC------------CCCccceEECCCCCEEEEEECCC----CCccEEEEECCCCCEEECCCCC
Confidence 4688888887765554431 11111111122 34566553322 1246999999988877765311
Q ss_pred CCCCCceeeEEEEECC-EEEEEccccCCCCCcCcEEEEEcCCCceEeccCCCCCCCCCcccEEEEE-CCcEEEEEcCCCC
Q 005043 193 DIPVARSGHTVVRASS-VLILFGGEDGKRRKLNDLHMFDLKSLTWLPLHCTGTGPSPRSNHVAALY-DDKNLLIFGGSSK 270 (717)
Q Consensus 193 ~~P~~R~~hs~~~~~~-~Lyv~GG~~~~~~~~~~v~~yD~~t~~W~~l~~~g~~P~~R~~~aa~~~-~~~~lyV~GG~~~ 270 (717)
. .... ....-++ .|++.....+ ...+|.+|+.+..+..+...+ .+....... +++ .+++.....
T Consensus 278 ~---~~~~-~~~s~dg~~l~~~s~~~g----~~~iy~~d~~~~~~~~l~~~~-----~~~~~~~~spdg~-~i~~~~~~~ 343 (417)
T TIGR02800 278 G---IDTE-PSWSPDGKSIAFTSDRGG----SPQIYMMDADGGEVRRLTFRG-----GYNASPSWSPDGD-LIAFVHREG 343 (417)
T ss_pred C---CCCC-EEECCCCCEEEEEECCCC----CceEEEEECCCCCEEEeecCC-----CCccCeEECCCCC-EEEEEEccC
Confidence 1 1111 1111234 4544432222 247999999988888775221 122222333 455 444444332
Q ss_pred CCCCCeEEEEECCCCcEEEeec
Q 005043 271 SKTLNDLYSLDFETMIWTRIKI 292 (717)
Q Consensus 271 ~~~~ndv~~yd~~t~~W~~v~~ 292 (717)
....++.+|+.+..++.+..
T Consensus 344 --~~~~i~~~d~~~~~~~~l~~ 363 (417)
T TIGR02800 344 --GGFNIAVMDLDGGGERVLTD 363 (417)
T ss_pred --CceEEEEEeCCCCCeEEccC
Confidence 23479999999877776653
No 97
>PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT). This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1 (Q61026 from SWISSPROT), and thus enhances transcriptional activation by a number of nuclear receptors. CoCoA has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region [].
Probab=94.09 E-value=0.19 Score=57.22 Aligned_cols=136 Identities=21% Similarity=0.219 Sum_probs=74.4
Q ss_pred HHHHHHHHHHHHHhcchhHHHHHHHhhHHHHHhhhhhHHhhHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhccccccc
Q 005043 569 QFYESKMAALIRKNGILEGQLAAALVNREAAEKNFSSVLKSRQEMEKKLADSLKEMELLKEKLAGLELAQEEANSLSNIV 648 (717)
Q Consensus 569 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 648 (717)
..-+.+...+-.+...|+.+|..+-..-++.+.....++++.+.+.++...+..+.+.++++|..+|.--+. |..-.
T Consensus 160 ~~Le~e~~~l~~~v~~l~~eL~~~~ee~e~L~~~~kel~~~~e~l~~E~~~L~~q~~e~~~ri~~LEedi~~---l~qk~ 236 (546)
T PF07888_consen 160 EQLEEEVEQLREEVERLEAELEQEEEEMEQLKQQQKELTESSEELKEERESLKEQLAEARQRIRELEEDIKT---LTQKE 236 (546)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHH
Confidence 445555566666666667777666666666666666666666666666665555555555555554421111 10000
Q ss_pred ccCCccchhhHHHHHHHHHHHH----HHhhhhccchhhccccceeeEEEeehhhhhhhhhcccC
Q 005043 649 HSDNVRLEHDVAFLKAVLDDTQ----KELHSTRGVLAGERARAFQLQVEVFHLKQRLQSLENRA 708 (717)
Q Consensus 649 ~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 708 (717)
.++=++.-.+.-+++=++.++ ++|..+---+.-+..+++++|+|...||..|+.++.|.
T Consensus 237 -~E~e~~~~~lk~~~~elEq~~~eLk~rLk~~~~~~~~~~~~~~~~~~e~e~LkeqLr~~qe~l 299 (546)
T PF07888_consen 237 -KEQEKELDKLKELKAELEQLEAELKQRLKETVVQLKQEETQAQQLQQENEALKEQLRSAQEQL 299 (546)
T ss_pred -HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHH
Confidence 000011111122222233222 34444433344456778999999999999999988763
No 98
>PRK04043 tolB translocation protein TolB; Provisional
Probab=93.98 E-value=13 Score=41.82 Aligned_cols=186 Identities=8% Similarity=0.063 Sum_probs=100.7
Q ss_pred EEEEEECCCCcEEEeeecCCCCCCceeeEEEEEC-CEEEEEccccCCCCCcCcEEEEEcCCCceEeccCCCCCCCCCccc
Q 005043 174 SVWTFDTETECWSVVEAKGDIPVARSGHTVVRAS-SVLILFGGEDGKRRKLNDLHMFDLKSLTWLPLHCTGTGPSPRSNH 252 (717)
Q Consensus 174 ~v~~yD~~t~~W~~l~~~g~~P~~R~~hs~~~~~-~~Lyv~GG~~~~~~~~~~v~~yD~~t~~W~~l~~~g~~P~~R~~~ 252 (717)
++|++|+.+++=+.+.. .+. ........-+ .+|++.-...+ -.++|.+|+.+..++.+. ..+. ....
T Consensus 214 ~Iyv~dl~tg~~~~lt~---~~g-~~~~~~~SPDG~~la~~~~~~g----~~~Iy~~dl~~g~~~~LT---~~~~-~d~~ 281 (419)
T PRK04043 214 TLYKYNLYTGKKEKIAS---SQG-MLVVSDVSKDGSKLLLTMAPKG----QPDIYLYDTNTKTLTQIT---NYPG-IDVN 281 (419)
T ss_pred EEEEEECCCCcEEEEec---CCC-cEEeeEECCCCCEEEEEEccCC----CcEEEEEECCCCcEEEcc---cCCC-ccCc
Confidence 89999999887666652 111 1111112223 35555433222 368999999999999886 2222 1111
Q ss_pred EEEEECCcEEEEEcCCCCCCCCCeEEEEECCCCcEEEeecCCCCCCCCcceEEEEECCEEEEEecCCCCC---ccCeEEE
Q 005043 253 VAALYDDKNLLIFGGSSKSKTLNDLYSLDFETMIWTRIKIRGFHPSPRAGCCGVLCGTKWYIAGGGSRKK---RHAETLI 329 (717)
Q Consensus 253 aa~~~~~~~lyV~GG~~~~~~~ndv~~yd~~t~~W~~v~~~g~~P~~R~~~sav~~~~~IyV~GG~~~~~---~~~dv~~ 329 (717)
....-+++.|++.....+ ..+||++|+.++..+++...+. ........++.|.+........ ...++++
T Consensus 282 p~~SPDG~~I~F~Sdr~g---~~~Iy~~dl~~g~~~rlt~~g~-----~~~~~SPDG~~Ia~~~~~~~~~~~~~~~~I~v 353 (419)
T PRK04043 282 GNFVEDDKRIVFVSDRLG---YPNIFMKKLNSGSVEQVVFHGK-----NNSSVSTYKNYIVYSSRETNNEFGKNTFNLYL 353 (419)
T ss_pred cEECCCCCEEEEEECCCC---CceEEEEECCCCCeEeCccCCC-----cCceECCCCCEEEEEEcCCCcccCCCCcEEEE
Confidence 122234555666544322 2579999999999988765322 1222112244454444322211 2358999
Q ss_pred EECCCCcEEEeecCCCCCCCCCcceEEEEEEeCCCcEEEEEcCCCCCCCCeEEEEEccCCc
Q 005043 330 FDILKGEWSVAITSPSSSVTSNKGFTLVLVQHKEKDFLVAFGGIKKEPSNQVEVLSIEKNE 390 (717)
Q Consensus 330 yD~~t~~W~~l~~~p~~~~~~r~g~s~v~v~~~~~~~I~v~GG~~~~~~n~v~vyd~~~~e 390 (717)
+|+.+..++.+.... . .. ...+.. ++..|+..... .....++.+++..+.
T Consensus 354 ~d~~~g~~~~LT~~~------~-~~-~p~~SP-DG~~I~f~~~~--~~~~~L~~~~l~g~~ 403 (419)
T PRK04043 354 ISTNSDYIRRLTANG------V-NQ-FPRFSS-DGGSIMFIKYL--GNQSALGIIRLNYNK 403 (419)
T ss_pred EECCCCCeEECCCCC------C-cC-CeEECC-CCCEEEEEEcc--CCcEEEEEEecCCCe
Confidence 999999998875321 1 11 122332 23344444332 223468888887654
No 99
>PF02191 OLF: Olfactomedin-like domain; InterPro: IPR003112 The olfactomedin-domain was first identified in olfactomedin, an extracellular matrix protein of the olfactory neuroepithelium []. Members of this extracellular domain-family have since been shown to be present in several metazoan proteins, such as latrophilins, myocilins, optimedins and noelins, the latter being involved in the generation of neural crest cells. Myocilin is of considerable interest, as mutations in its olfactomedin-domain can lead to glaucoma []. The olfactomedin-domains in myocilin and optimedin are essential for the interaction between these two proteins [].; GO: 0005515 protein binding
Probab=93.93 E-value=6.3 Score=41.16 Aligned_cols=194 Identities=16% Similarity=0.143 Sum_probs=102.4
Q ss_pred CCEEEEEeccCCCCCCceEEEEEECC-----CCcEEEeeecCCCCCCceeeEEEEECCEEEEEccccCCCCCcCcEEEEE
Q 005043 156 GKKVLLVGGKTDSGSDRVSVWTFDTE-----TECWSVVEAKGDIPVARSGHTVVRASSVLILFGGEDGKRRKLNDLHMFD 230 (717)
Q Consensus 156 ~~~Iyv~GG~~~~~~~~~~v~~yD~~-----t~~W~~l~~~g~~P~~R~~hs~~~~~~~Lyv~GG~~~~~~~~~~v~~yD 230 (717)
++++|++.|.... .++.|... .+.+...- .+|.+-.|.+.++++|.+|.--. -.+.|.+||
T Consensus 30 ~~~iy~~~~~~~~-----~v~ey~~~~~f~~~~~~~~~~---~Lp~~~~GtG~vVYngslYY~~~------~s~~Ivkyd 95 (250)
T PF02191_consen 30 SEKIYVTSGFSGN-----TVYEYRNYEDFLRNGRSSRTY---KLPYPWQGTGHVVYNGSLYYNKY------NSRNIVKYD 95 (250)
T ss_pred CCCEEEECccCCC-----EEEEEcCHhHHhhcCCCceEE---EEeceeccCCeEEECCcEEEEec------CCceEEEEE
Confidence 5678999886432 56666432 22222222 36777777788889998888632 357899999
Q ss_pred cCCCceE---eccCCCC---CCCCCcc---cEEEEECCcEEEEEcCCCCCCCCCeEEEEECCCCcEEEeecCCCCCCCCc
Q 005043 231 LKSLTWL---PLHCTGT---GPSPRSN---HVAALYDDKNLLIFGGSSKSKTLNDLYSLDFETMIWTRIKIRGFHPSPRA 301 (717)
Q Consensus 231 ~~t~~W~---~l~~~g~---~P~~R~~---~aa~~~~~~~lyV~GG~~~~~~~ndv~~yd~~t~~W~~v~~~g~~P~~R~ 301 (717)
+.+..-. .++..+. .|..... .-.++-.++ |+|+-......-.--|-++|+.+..-...-... .+.+..
T Consensus 96 L~t~~v~~~~~L~~A~~~n~~~y~~~~~t~iD~AvDE~G-LWvIYat~~~~g~ivvskld~~tL~v~~tw~T~-~~k~~~ 173 (250)
T PF02191_consen 96 LTTRSVVARRELPGAGYNNRFPYYWSGYTDIDFAVDENG-LWVIYATEDNNGNIVVSKLDPETLSVEQTWNTS-YPKRSA 173 (250)
T ss_pred CcCCcEEEEEECCccccccccceecCCCceEEEEEcCCC-EEEEEecCCCCCcEEEEeeCcccCceEEEEEec-cCchhh
Confidence 9988644 3331111 1111111 122333445 666644432221123556677654322221111 233333
Q ss_pred ceEEEEECCEEEEEecCCCCCccCeEEEEECCCCcEEEeecCCCCCCCCCcceEEEEEEeCCCcEEEEEc
Q 005043 302 GCCGVLCGTKWYIAGGGSRKKRHAETLIFDILKGEWSVAITSPSSSVTSNKGFTLVLVQHKEKDFLVAFG 371 (717)
Q Consensus 302 ~~sav~~~~~IyV~GG~~~~~~~~dv~~yD~~t~~W~~l~~~p~~~~~~r~g~s~v~v~~~~~~~I~v~G 371 (717)
+. +..+=|.||++...+... ..-.+.||+.+++=..+.. + ...+.+....+-.++.+..||+.-
T Consensus 174 ~n-aFmvCGvLY~~~s~~~~~-~~I~yafDt~t~~~~~~~i-~---f~~~~~~~~~l~YNP~dk~LY~wd 237 (250)
T PF02191_consen 174 GN-AFMVCGVLYATDSYDTRD-TEIFYAFDTYTGKEEDVSI-P---FPNPYGNISMLSYNPRDKKLYAWD 237 (250)
T ss_pred cc-eeeEeeEEEEEEECCCCC-cEEEEEEECCCCceeceee-e---eccccCceEeeeECCCCCeEEEEE
Confidence 33 445567889888765443 2234799999887655431 1 123333333344445667777654
No 100
>PRK04922 tolB translocation protein TolB; Provisional
Probab=93.92 E-value=9.9 Score=42.88 Aligned_cols=144 Identities=10% Similarity=0.022 Sum_probs=75.8
Q ss_pred CcEEEEEcCCCceEeccCCCCCCCCCcccEEEEECCcEEEEEcCCCCCCCCCeEEEEECCCCcEEEeecCCCCCCCCcce
Q 005043 224 NDLHMFDLKSLTWLPLHCTGTGPSPRSNHVAALYDDKNLLIFGGSSKSKTLNDLYSLDFETMIWTRIKIRGFHPSPRAGC 303 (717)
Q Consensus 224 ~~v~~yD~~t~~W~~l~~~g~~P~~R~~~aa~~~~~~~lyV~GG~~~~~~~ndv~~yd~~t~~W~~v~~~g~~P~~R~~~ 303 (717)
..++++|+.+++...+. ..+.. .......-+++.|++....++ ..+++++|+.++..+.+... +. ....
T Consensus 228 ~~l~~~dl~~g~~~~l~---~~~g~-~~~~~~SpDG~~l~~~~s~~g---~~~Iy~~d~~~g~~~~lt~~---~~-~~~~ 296 (433)
T PRK04922 228 SAIYVQDLATGQRELVA---SFRGI-NGAPSFSPDGRRLALTLSRDG---NPEIYVMDLGSRQLTRLTNH---FG-IDTE 296 (433)
T ss_pred cEEEEEECCCCCEEEec---cCCCC-ccCceECCCCCEEEEEEeCCC---CceEEEEECCCCCeEECccC---CC-Cccc
Confidence 57999999988877665 22221 111222234554544332222 24799999999887766542 11 1111
Q ss_pred EEEEECCE-EEEEecCCCCCccCeEEEEECCCCcEEEeecCCCCCCCCCcceEEEEEEeCCCcEEEEEcCCCCCCCCeEE
Q 005043 304 CGVLCGTK-WYIAGGGSRKKRHAETLIFDILKGEWSVAITSPSSSVTSNKGFTLVLVQHKEKDFLVAFGGIKKEPSNQVE 382 (717)
Q Consensus 304 sav~~~~~-IyV~GG~~~~~~~~dv~~yD~~t~~W~~l~~~p~~~~~~r~g~s~v~v~~~~~~~I~v~GG~~~~~~n~v~ 382 (717)
....-+++ |++.....+ ...+|.+|..+..++.+... ..... ...+. +++..|+...+.++ ...++
T Consensus 297 ~~~spDG~~l~f~sd~~g---~~~iy~~dl~~g~~~~lt~~------g~~~~-~~~~S-pDG~~Ia~~~~~~~--~~~I~ 363 (433)
T PRK04922 297 PTWAPDGKSIYFTSDRGG---RPQIYRVAASGGSAERLTFQ------GNYNA-RASVS-PDGKKIAMVHGSGG--QYRIA 363 (433)
T ss_pred eEECCCCCEEEEEECCCC---CceEEEEECCCCCeEEeecC------CCCcc-CEEEC-CCCCEEEEEECCCC--ceeEE
Confidence 11222444 444433222 24799999988888776421 11111 22332 23455555444322 23789
Q ss_pred EEEccCCcc
Q 005043 383 VLSIEKNES 391 (717)
Q Consensus 383 vyd~~~~eW 391 (717)
++|+.+.+.
T Consensus 364 v~d~~~g~~ 372 (433)
T PRK04922 364 VMDLSTGSV 372 (433)
T ss_pred EEECCCCCe
Confidence 999877664
No 101
>PLN00181 protein SPA1-RELATED; Provisional
Probab=93.41 E-value=25 Score=43.06 Aligned_cols=144 Identities=14% Similarity=0.165 Sum_probs=70.2
Q ss_pred CCEEEEEeccCCCCCCceEEEEEECCCCcE-EEeeecCCCCCCceeeEEEE--ECCEEEEEccccCCCCCcCcEEEEEcC
Q 005043 156 GKKVLLVGGKTDSGSDRVSVWTFDTETECW-SVVEAKGDIPVARSGHTVVR--ASSVLILFGGEDGKRRKLNDLHMFDLK 232 (717)
Q Consensus 156 ~~~Iyv~GG~~~~~~~~~~v~~yD~~t~~W-~~l~~~g~~P~~R~~hs~~~--~~~~Lyv~GG~~~~~~~~~~v~~yD~~ 232 (717)
++.+++.||.+. .+.+||+.+..- ..+.. ... ..++.. .++.+++.|+.+ +.+.+||+.
T Consensus 587 ~~~~L~Sgs~Dg------~v~iWd~~~~~~~~~~~~----~~~--v~~v~~~~~~g~~latgs~d------g~I~iwD~~ 648 (793)
T PLN00181 587 DPTLLASGSDDG------SVKLWSINQGVSIGTIKT----KAN--ICCVQFPSESGRSLAFGSAD------HKVYYYDLR 648 (793)
T ss_pred CCCEEEEEcCCC------EEEEEECCCCcEEEEEec----CCC--eEEEEEeCCCCCEEEEEeCC------CeEEEEECC
Confidence 456778887642 588888876542 22221 111 112222 246777777654 358899986
Q ss_pred CCc--eEeccCCCCCCCCCcccEEEEECCcEEEEEcCCCCCCCCCeEEEEECCCC----cEEEeecCCCCCCCCcceEEE
Q 005043 233 SLT--WLPLHCTGTGPSPRSNHVAALYDDKNLLIFGGSSKSKTLNDLYSLDFETM----IWTRIKIRGFHPSPRAGCCGV 306 (717)
Q Consensus 233 t~~--W~~l~~~g~~P~~R~~~aa~~~~~~~lyV~GG~~~~~~~ndv~~yd~~t~----~W~~v~~~g~~P~~R~~~sav 306 (717)
+.. ...+. + . ...-..+...++. .++.|+.++ .+.+||+... .|..+..... ........+.
T Consensus 649 ~~~~~~~~~~--~-h--~~~V~~v~f~~~~-~lvs~s~D~-----~ikiWd~~~~~~~~~~~~l~~~~g-h~~~i~~v~~ 716 (793)
T PLN00181 649 NPKLPLCTMI--G-H--SKTVSYVRFVDSS-TLVSSSTDN-----TLKLWDLSMSISGINETPLHSFMG-HTNVKNFVGL 716 (793)
T ss_pred CCCccceEec--C-C--CCCEEEEEEeCCC-EEEEEECCC-----EEEEEeCCCCccccCCcceEEEcC-CCCCeeEEEE
Confidence 542 11111 1 0 0111122233555 566676543 4788887543 2333322100 0111111222
Q ss_pred EECCEEEEEecCCCCCccCeEEEEECCC
Q 005043 307 LCGTKWYIAGGGSRKKRHAETLIFDILK 334 (717)
Q Consensus 307 ~~~~~IyV~GG~~~~~~~~dv~~yD~~t 334 (717)
..++.+++.|+.++ .+.+|+...
T Consensus 717 s~~~~~lasgs~D~-----~v~iw~~~~ 739 (793)
T PLN00181 717 SVSDGYIATGSETN-----EVFVYHKAF 739 (793)
T ss_pred cCCCCEEEEEeCCC-----EEEEEECCC
Confidence 23567777887654 377777654
No 102
>PLN00181 protein SPA1-RELATED; Provisional
Probab=93.27 E-value=16 Score=44.62 Aligned_cols=140 Identities=11% Similarity=0.163 Sum_probs=70.1
Q ss_pred CEEEEEeccCCCCCCceEEEEEECCCCcEEEeeecCCCCCCceeeEEEEE--CCEEEEEccccCCCCCcCcEEEEEcCCC
Q 005043 157 KKVLLVGGKTDSGSDRVSVWTFDTETECWSVVEAKGDIPVARSGHTVVRA--SSVLILFGGEDGKRRKLNDLHMFDLKSL 234 (717)
Q Consensus 157 ~~Iyv~GG~~~~~~~~~~v~~yD~~t~~W~~l~~~g~~P~~R~~hs~~~~--~~~Lyv~GG~~~~~~~~~~v~~yD~~t~ 234 (717)
+.+++.|+.+ ..+.+||..+......- -.....-.+++.. ++.+++.||.++ .+.+||+.+.
T Consensus 545 ~~~las~~~D------g~v~lWd~~~~~~~~~~----~~H~~~V~~l~~~p~~~~~L~Sgs~Dg------~v~iWd~~~~ 608 (793)
T PLN00181 545 KSQVASSNFE------GVVQVWDVARSQLVTEM----KEHEKRVWSIDYSSADPTLLASGSDDG------SVKLWSINQG 608 (793)
T ss_pred CCEEEEEeCC------CeEEEEECCCCeEEEEe----cCCCCCEEEEEEcCCCCCEEEEEcCCC------EEEEEECCCC
Confidence 4556666653 25888898876532211 0111122233333 457778877553 3778888654
Q ss_pred ceE-eccCCCCCCCCCcccEEEEE--CCcEEEEEcCCCCCCCCCeEEEEECCCCc--EEEeecCCCCCCCCcceEEEEEC
Q 005043 235 TWL-PLHCTGTGPSPRSNHVAALY--DDKNLLIFGGSSKSKTLNDLYSLDFETMI--WTRIKIRGFHPSPRAGCCGVLCG 309 (717)
Q Consensus 235 ~W~-~l~~~g~~P~~R~~~aa~~~--~~~~lyV~GG~~~~~~~ndv~~yd~~t~~--W~~v~~~g~~P~~R~~~sav~~~ 309 (717)
.-. .+. . . ....++.+ .+..++++|+.++ .|.+||+.+.. ...+.. ....-..+...+
T Consensus 609 ~~~~~~~---~-~---~~v~~v~~~~~~g~~latgs~dg-----~I~iwD~~~~~~~~~~~~~-----h~~~V~~v~f~~ 671 (793)
T PLN00181 609 VSIGTIK---T-K---ANICCVQFPSESGRSLAFGSADH-----KVYYYDLRNPKLPLCTMIG-----HSKTVSYVRFVD 671 (793)
T ss_pred cEEEEEe---c-C---CCeEEEEEeCCCCCEEEEEeCCC-----eEEEEECCCCCccceEecC-----CCCCEEEEEEeC
Confidence 321 221 0 0 11122222 2233677777653 58999986542 222211 111112223346
Q ss_pred CEEEEEecCCCCCccCeEEEEECCC
Q 005043 310 TKWYIAGGGSRKKRHAETLIFDILK 334 (717)
Q Consensus 310 ~~IyV~GG~~~~~~~~dv~~yD~~t 334 (717)
+..++.|+.++ .+.+||+..
T Consensus 672 ~~~lvs~s~D~-----~ikiWd~~~ 691 (793)
T PLN00181 672 SSTLVSSSTDN-----TLKLWDLSM 691 (793)
T ss_pred CCEEEEEECCC-----EEEEEeCCC
Confidence 66777777553 377888764
No 103
>PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2.3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X.
Probab=93.07 E-value=3.1 Score=43.53 Aligned_cols=113 Identities=18% Similarity=0.147 Sum_probs=75.9
Q ss_pred eeEEEE-ECCEEEEEccccCCCCCcCcEEEEEcCCCceEeccCCCCCCCCCcccEEEEECCcEEEEEcCCCCCCCCCeEE
Q 005043 200 GHTVVR-ASSVLILFGGEDGKRRKLNDLHMFDLKSLTWLPLHCTGTGPSPRSNHVAALYDDKNLLIFGGSSKSKTLNDLY 278 (717)
Q Consensus 200 ~hs~~~-~~~~Lyv~GG~~~~~~~~~~v~~yD~~t~~W~~l~~~g~~P~~R~~~aa~~~~~~~lyV~GG~~~~~~~ndv~ 278 (717)
-.+... .++.||.--|..+. +.+.+||+.+++-.... ++|..-++=.++.++++ ||..==.+ +..+
T Consensus 47 TQGL~~~~~g~LyESTG~yG~----S~l~~~d~~tg~~~~~~---~l~~~~FgEGit~~~d~-l~qLTWk~-----~~~f 113 (264)
T PF05096_consen 47 TQGLEFLDDGTLYESTGLYGQ----SSLRKVDLETGKVLQSV---PLPPRYFGEGITILGDK-LYQLTWKE-----GTGF 113 (264)
T ss_dssp EEEEEEEETTEEEEEECSTTE----EEEEEEETTTSSEEEEE---E-TTT--EEEEEEETTE-EEEEESSS-----SEEE
T ss_pred CccEEecCCCEEEEeCCCCCc----EEEEEEECCCCcEEEEE---ECCccccceeEEEECCE-EEEEEecC-----CeEE
Confidence 334555 57899998887654 67899999998866554 67777777788889888 77764332 4589
Q ss_pred EEECCCCcEEEeecCCCCCCCCcceEEEEECCEEEEEecCCCCCccCeEEEEECCCCc
Q 005043 279 SLDFETMIWTRIKIRGFHPSPRAGCCGVLCGTKWYIAGGGSRKKRHAETLIFDILKGE 336 (717)
Q Consensus 279 ~yd~~t~~W~~v~~~g~~P~~R~~~sav~~~~~IyV~GG~~~~~~~~dv~~yD~~t~~ 336 (717)
+||+.+. +.+... +.+..+.+.+..+..+|+.-|. +.++.+||.+.+
T Consensus 114 ~yd~~tl--~~~~~~---~y~~EGWGLt~dg~~Li~SDGS------~~L~~~dP~~f~ 160 (264)
T PF05096_consen 114 VYDPNTL--KKIGTF---PYPGEGWGLTSDGKRLIMSDGS------SRLYFLDPETFK 160 (264)
T ss_dssp EEETTTT--EEEEEE---E-SSS--EEEECSSCEEEE-SS------SEEEEE-TTT-S
T ss_pred EEccccc--eEEEEE---ecCCcceEEEcCCCEEEEECCc------cceEEECCcccc
Confidence 9998764 444432 4456889999888899998883 469999998754
No 104
>cd00094 HX Hemopexin-like repeats.; Hemopexin is a heme-binding protein that transports heme to the liver. Hemopexin-like repeats occur in vitronectin and some matrix metalloproteinases family (matrixins). The HX repeats of some matrixins bind tissue inhibitor of metalloproteinases (TIMPs). This CD contains 4 instances of the repeat.
Probab=93.05 E-value=7.1 Score=38.95 Aligned_cols=155 Identities=15% Similarity=0.109 Sum_probs=76.7
Q ss_pred EEEEECCEEEEEccccCCCCCcCcEEEEEcCCCce--EeccCC-CCCCCCCcccEEEEECC-cEEEEEcCCCCCCCCCeE
Q 005043 202 TVVRASSVLILFGGEDGKRRKLNDLHMFDLKSLTW--LPLHCT-GTGPSPRSNHVAALYDD-KNLLIFGGSSKSKTLNDL 277 (717)
Q Consensus 202 s~~~~~~~Lyv~GG~~~~~~~~~~v~~yD~~t~~W--~~l~~~-g~~P~~R~~~aa~~~~~-~~lyV~GG~~~~~~~ndv 277 (717)
+++...+.+|+|-| +.+|+|+...... ..+... +.+|. ... ++..... +.+|+|-|. ..
T Consensus 11 A~~~~~g~~y~FkG--------~~~w~~~~~~~~~~p~~I~~~w~~~p~-~ID-Aa~~~~~~~~~yfFkg~-------~y 73 (194)
T cd00094 11 AVTTLRGELYFFKG--------RYFWRLSPGKPPGSPFLISSFWPSLPS-PVD-AAFERPDTGKIYFFKGD-------KY 73 (194)
T ss_pred eEEEeCCEEEEEeC--------CEEEEEeCCCCCCCCeEhhhhCCCCCC-Ccc-EEEEECCCCEEEEECCC-------EE
Confidence 34445689999965 3467777542111 111100 11232 222 3333332 448888763 58
Q ss_pred EEEECCCCcEE---EeecCCCCCCCCcceEEEEE--CCEEEEEecCCCCCccCeEEEEECCCCcEEEeecCCCCC----C
Q 005043 278 YSLDFETMIWT---RIKIRGFHPSPRAGCCGVLC--GTKWYIAGGGSRKKRHAETLIFDILKGEWSVAITSPSSS----V 348 (717)
Q Consensus 278 ~~yd~~t~~W~---~v~~~g~~P~~R~~~sav~~--~~~IyV~GG~~~~~~~~dv~~yD~~t~~W~~l~~~p~~~----~ 348 (717)
|+|+..+..+. .+...+.++.+..--++... ++++|+|.| +..|+||...++...- .|... +
T Consensus 74 w~~~~~~~~~~~Pk~i~~~~~~~~~~~iDAA~~~~~~~~~yfFkg-------~~y~ry~~~~~~v~~~--yP~~i~~~w~ 144 (194)
T cd00094 74 WVYTGKNLEPGYPKPISDLGFPPTVKQIDAALRWPDNGKTYFFKG-------DKYWRYDEKTQKMDPG--YPKLIETDFP 144 (194)
T ss_pred EEEcCcccccCCCcchhhcCCCCCCCCccEEEEEcCCCEEEEEeC-------CEEEEEeCCCccccCC--CCcchhhcCC
Confidence 88887642221 11111111111222233334 589999998 5689999866543211 01000 0
Q ss_pred CCCcceEEEEEEeCCCcEEEEEcCCCCCCCCeEEEEEccCCc
Q 005043 349 TSNKGFTLVLVQHKEKDFLVAFGGIKKEPSNQVEVLSIEKNE 390 (717)
Q Consensus 349 ~~r~g~s~v~v~~~~~~~I~v~GG~~~~~~n~v~vyd~~~~e 390 (717)
.......++.. . .++.+|+|-|. ..|.||..+.+
T Consensus 145 g~p~~idaa~~-~-~~~~~yfF~g~------~y~~~d~~~~~ 178 (194)
T cd00094 145 GVPDKVDAAFR-W-LDGYYYFFKGD------QYWRFDPRSKE 178 (194)
T ss_pred CcCCCcceeEE-e-CCCcEEEEECC------EEEEEeCccce
Confidence 00011222222 2 13678888885 89999988764
No 105
>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto
Probab=93.00 E-value=11 Score=37.64 Aligned_cols=187 Identities=12% Similarity=0.117 Sum_probs=86.1
Q ss_pred CCEEEEEcccCCCCCcccEEEEEcCCCceEEccccccCCCCCCCCCCCcccceEEEEE-CCEEEEEeccCCCCCCceEEE
Q 005043 98 GNKMIVVGGESGNGLLDDVQVLNFDRFSWTAASSKLYLSPSSLPLKIPACRGHSLISW-GKKVLLVGGKTDSGSDRVSVW 176 (717)
Q Consensus 98 ~~~lyV~GG~~~~~~~~~v~~yd~~t~~W~~l~~~~~~~~~~~~~~~p~r~~hs~v~~-~~~Iyv~GG~~~~~~~~~~v~ 176 (717)
++..+++|+.+ ..+.+||+.+......-. .....-.++... ++.+++.|+.. ..+.
T Consensus 62 ~~~~l~~~~~~-----~~i~i~~~~~~~~~~~~~------------~~~~~i~~~~~~~~~~~~~~~~~~------~~i~ 118 (289)
T cd00200 62 DGTYLASGSSD-----KTIRLWDLETGECVRTLT------------GHTSYVSSVAFSPDGRILSSSSRD------KTIK 118 (289)
T ss_pred CCCEEEEEcCC-----CeEEEEEcCcccceEEEe------------ccCCcEEEEEEcCCCCEEEEecCC------CeEE
Confidence 34466666653 358889888752211111 111111233333 34566666522 2688
Q ss_pred EEECCCCcEEEeeecCCCCCCceeeEEEEEC-CEEEEEccccCCCCCcCcEEEEEcCCCceE-eccCCCCCCCCCcccEE
Q 005043 177 TFDTETECWSVVEAKGDIPVARSGHTVVRAS-SVLILFGGEDGKRRKLNDLHMFDLKSLTWL-PLHCTGTGPSPRSNHVA 254 (717)
Q Consensus 177 ~yD~~t~~W~~l~~~g~~P~~R~~hs~~~~~-~~Lyv~GG~~~~~~~~~~v~~yD~~t~~W~-~l~~~g~~P~~R~~~aa 254 (717)
.||+.+..-...-. .....-.++.... +.+++.|+.+ ..+.+||+.+.+-. .+. . ....-.++
T Consensus 119 ~~~~~~~~~~~~~~----~~~~~i~~~~~~~~~~~l~~~~~~------~~i~i~d~~~~~~~~~~~----~-~~~~i~~~ 183 (289)
T cd00200 119 VWDVETGKCLTTLR----GHTDWVNSVAFSPDGTFVASSSQD------GTIKLWDLRTGKCVATLT----G-HTGEVNSV 183 (289)
T ss_pred EEECCCcEEEEEec----cCCCcEEEEEEcCcCCEEEEEcCC------CcEEEEEccccccceeEe----c-CccccceE
Confidence 99988554322211 1111222333333 3444444312 35888998644321 111 1 11112233
Q ss_pred EEECCcEEEEEcCCCCCCCCCeEEEEECCCCcEEEeecCCCCCCCCcceEEEEEC-CEEEEEecCCCCCccCeEEEEECC
Q 005043 255 ALYDDKNLLIFGGSSKSKTLNDLYSLDFETMIWTRIKIRGFHPSPRAGCCGVLCG-TKWYIAGGGSRKKRHAETLIFDIL 333 (717)
Q Consensus 255 ~~~~~~~lyV~GG~~~~~~~ndv~~yd~~t~~W~~v~~~g~~P~~R~~~sav~~~-~~IyV~GG~~~~~~~~dv~~yD~~ 333 (717)
....+...+++++.+ ..+..||+.+......-. .....-.++.... +.+++.++.++ .+.+||..
T Consensus 184 ~~~~~~~~l~~~~~~-----~~i~i~d~~~~~~~~~~~----~~~~~i~~~~~~~~~~~~~~~~~~~-----~i~i~~~~ 249 (289)
T cd00200 184 AFSPDGEKLLSSSSD-----GTIKLWDLSTGKCLGTLR----GHENGVNSVAFSPDGYLLASGSEDG-----TIRVWDLR 249 (289)
T ss_pred EECCCcCEEEEecCC-----CcEEEEECCCCceecchh----hcCCceEEEEEcCCCcEEEEEcCCC-----cEEEEEcC
Confidence 334443245555543 358999987644332211 1111222333333 55666555333 48899987
Q ss_pred CCc
Q 005043 334 KGE 336 (717)
Q Consensus 334 t~~ 336 (717)
+..
T Consensus 250 ~~~ 252 (289)
T cd00200 250 TGE 252 (289)
T ss_pred Cce
Confidence 643
No 106
>PRK04043 tolB translocation protein TolB; Provisional
Probab=92.93 E-value=19 Score=40.52 Aligned_cols=190 Identities=13% Similarity=0.075 Sum_probs=102.4
Q ss_pred cEEEEEcCCCceEEccccccCCCCCCCCCCCcccceEEEEE-CCEEEEEeccCCCCCCceEEEEEECCCCcEEEeeecCC
Q 005043 115 DVQVLNFDRFSWTAASSKLYLSPSSLPLKIPACRGHSLISW-GKKVLLVGGKTDSGSDRVSVWTFDTETECWSVVEAKGD 193 (717)
Q Consensus 115 ~v~~yd~~t~~W~~l~~~~~~~~~~~~~~~p~r~~hs~v~~-~~~Iyv~GG~~~~~~~~~~v~~yD~~t~~W~~l~~~g~ 193 (717)
++|++|+.++.=+.+... +.........- +.+|++.-... ...++|.+|..++.++.+..
T Consensus 214 ~Iyv~dl~tg~~~~lt~~------------~g~~~~~~~SPDG~~la~~~~~~----g~~~Iy~~dl~~g~~~~LT~--- 274 (419)
T PRK04043 214 TLYKYNLYTGKKEKIASS------------QGMLVVSDVSKDGSKLLLTMAPK----GQPDIYLYDTNTKTLTQITN--- 274 (419)
T ss_pred EEEEEECCCCcEEEEecC------------CCcEEeeEECCCCCEEEEEEccC----CCcEEEEEECCCCcEEEccc---
Confidence 799999988766665531 11111111222 34555543321 13489999999999988863
Q ss_pred CCCCceeeEEEEECCEEEEEccccCCCCCcCcEEEEEcCCCceEeccCCCCCCCCCcccEEEEECCcEEEEEcCCCCCC-
Q 005043 194 IPVARSGHTVVRASSVLILFGGEDGKRRKLNDLHMFDLKSLTWLPLHCTGTGPSPRSNHVAALYDDKNLLIFGGSSKSK- 272 (717)
Q Consensus 194 ~P~~R~~hs~~~~~~~Lyv~GG~~~~~~~~~~v~~yD~~t~~W~~l~~~g~~P~~R~~~aa~~~~~~~lyV~GG~~~~~- 272 (717)
.+..-....-.-.+.+||+.-...+ ..++|++|+.++..+++...+. +. ....-+++.|.+........
T Consensus 275 ~~~~d~~p~~SPDG~~I~F~Sdr~g----~~~Iy~~dl~~g~~~rlt~~g~-----~~-~~~SPDG~~Ia~~~~~~~~~~ 344 (419)
T PRK04043 275 YPGIDVNGNFVEDDKRIVFVSDRLG----YPNIFMKKLNSGSVEQVVFHGK-----NN-SSVSTYKNYIVYSSRETNNEF 344 (419)
T ss_pred CCCccCccEECCCCCEEEEEECCCC----CceEEEEECCCCCeEeCccCCC-----cC-ceECCCCCEEEEEEcCCCccc
Confidence 2211011111112446666643322 3689999999999887753222 22 23333555444443322111
Q ss_pred --CCCeEEEEECCCCcEEEeecCCCCCCCCcceEEEEECCE-EEEEecCCCCCccCeEEEEECCCCcEEEee
Q 005043 273 --TLNDLYSLDFETMIWTRIKIRGFHPSPRAGCCGVLCGTK-WYIAGGGSRKKRHAETLIFDILKGEWSVAI 341 (717)
Q Consensus 273 --~~ndv~~yd~~t~~W~~v~~~g~~P~~R~~~sav~~~~~-IyV~GG~~~~~~~~dv~~yD~~t~~W~~l~ 341 (717)
...+++.+|++++.++.+...+ ....-...-+++ |++.... + ....++.++++...=..++
T Consensus 345 ~~~~~~I~v~d~~~g~~~~LT~~~-----~~~~p~~SPDG~~I~f~~~~-~--~~~~L~~~~l~g~~~~~l~ 408 (419)
T PRK04043 345 GKNTFNLYLISTNSDYIRRLTANG-----VNQFPRFSSDGGSIMFIKYL-G--NQSALGIIRLNYNKSFLFP 408 (419)
T ss_pred CCCCcEEEEEECCCCCeEECCCCC-----CcCCeEECCCCCEEEEEEcc-C--CcEEEEEEecCCCeeEEee
Confidence 2358999999999999887632 111112223454 4444332 2 2246888888776544443
No 107
>PRK01742 tolB translocation protein TolB; Provisional
Probab=92.53 E-value=22 Score=40.09 Aligned_cols=139 Identities=12% Similarity=0.089 Sum_probs=70.9
Q ss_pred eEEEEEECCCCcEEEeeecCCCCCCceeeEEEE-ECCEEEEEcc-ccCCCCCcCcEEEEEcCCCceEeccCCCCCCCCCc
Q 005043 173 VSVWTFDTETECWSVVEAKGDIPVARSGHTVVR-ASSVLILFGG-EDGKRRKLNDLHMFDLKSLTWLPLHCTGTGPSPRS 250 (717)
Q Consensus 173 ~~v~~yD~~t~~W~~l~~~g~~P~~R~~hs~~~-~~~~Lyv~GG-~~~~~~~~~~v~~yD~~t~~W~~l~~~g~~P~~R~ 250 (717)
..++++|+.++.-+.+.. .+.. . ..... -+++.++++. .++. .++|.+|+.+.....+.. .+. ..
T Consensus 228 ~~i~i~dl~tg~~~~l~~---~~g~-~-~~~~wSPDG~~La~~~~~~g~----~~Iy~~d~~~~~~~~lt~---~~~-~~ 294 (429)
T PRK01742 228 SQLVVHDLRSGARKVVAS---FRGH-N-GAPAFSPDGSRLAFASSKDGV----LNIYVMGANGGTPSQLTS---GAG-NN 294 (429)
T ss_pred cEEEEEeCCCCceEEEec---CCCc-c-CceeECCCCCEEEEEEecCCc----EEEEEEECCCCCeEeecc---CCC-Cc
Confidence 369999998877665542 2211 1 12222 2444444433 2221 358999998888777642 111 11
Q ss_pred ccEEEEECCcEEEEEcCCCCCCCCCeEEEEECCCCcEEEeecCCCCCCCCcceEEEEEC-CEEEEEecCCCCCccCeEEE
Q 005043 251 NHVAALYDDKNLLIFGGSSKSKTLNDLYSLDFETMIWTRIKIRGFHPSPRAGCCGVLCG-TKWYIAGGGSRKKRHAETLI 329 (717)
Q Consensus 251 ~~aa~~~~~~~lyV~GG~~~~~~~ndv~~yd~~t~~W~~v~~~g~~P~~R~~~sav~~~-~~IyV~GG~~~~~~~~dv~~ 329 (717)
......-+++.|++.....+ ...+|.++..+..-+.+.. .. .. ....-+ ..|++.++ ..++.
T Consensus 295 ~~~~wSpDG~~i~f~s~~~g---~~~I~~~~~~~~~~~~l~~-----~~-~~-~~~SpDG~~ia~~~~-------~~i~~ 357 (429)
T PRK01742 295 TEPSWSPDGQSILFTSDRSG---SPQVYRMSASGGGASLVGG-----RG-YS-AQISADGKTLVMING-------DNVVK 357 (429)
T ss_pred CCEEECCCCCEEEEEECCCC---CceEEEEECCCCCeEEecC-----CC-CC-ccCCCCCCEEEEEcC-------CCEEE
Confidence 12222234554444433222 2368888876654444321 11 11 112224 44555443 35788
Q ss_pred EECCCCcEEEee
Q 005043 330 FDILKGEWSVAI 341 (717)
Q Consensus 330 yD~~t~~W~~l~ 341 (717)
+|+.+..+..+.
T Consensus 358 ~Dl~~g~~~~lt 369 (429)
T PRK01742 358 QDLTSGSTEVLS 369 (429)
T ss_pred EECCCCCeEEec
Confidence 999999888764
No 108
>PTZ00421 coronin; Provisional
Probab=92.38 E-value=15 Score=42.35 Aligned_cols=154 Identities=12% Similarity=0.128 Sum_probs=69.4
Q ss_pred CEEEEEccccCCCCCcCcEEEEEcCCCceEe-ccCCCCCCCCCcccEEEEECCcEEEEEcCCCCCCCCCeEEEEECCCCc
Q 005043 208 SVLILFGGEDGKRRKLNDLHMFDLKSLTWLP-LHCTGTGPSPRSNHVAALYDDKNLLIFGGSSKSKTLNDLYSLDFETMI 286 (717)
Q Consensus 208 ~~Lyv~GG~~~~~~~~~~v~~yD~~t~~W~~-l~~~g~~P~~R~~~aa~~~~~~~lyV~GG~~~~~~~ndv~~yd~~t~~ 286 (717)
+.+++.||.++ .+.+||+.+..-.. +. ... ..-.++....+..+++.|+.++ .+.+||+.++.
T Consensus 138 ~~iLaSgs~Dg------tVrIWDl~tg~~~~~l~---~h~--~~V~sla~spdG~lLatgs~Dg-----~IrIwD~rsg~ 201 (493)
T PTZ00421 138 MNVLASAGADM------VVNVWDVERGKAVEVIK---CHS--DQITSLEWNLDGSLLCTTSKDK-----KLNIIDPRDGT 201 (493)
T ss_pred CCEEEEEeCCC------EEEEEECCCCeEEEEEc---CCC--CceEEEEEECCCCEEEEecCCC-----EEEEEECCCCc
Confidence 35777776543 37788987764321 11 111 1112233333333777777654 48899998765
Q ss_pred EE-EeecCCCCCCCCcceEEEEECCEEEEEecCCCCCccCeEEEEECCCCcEEEeecCCCCCCCCCcceEEEEEEeCCCc
Q 005043 287 WT-RIKIRGFHPSPRAGCCGVLCGTKWYIAGGGSRKKRHAETLIFDILKGEWSVAITSPSSSVTSNKGFTLVLVQHKEKD 365 (717)
Q Consensus 287 W~-~v~~~g~~P~~R~~~sav~~~~~IyV~GG~~~~~~~~dv~~yD~~t~~W~~l~~~p~~~~~~r~g~s~v~v~~~~~~ 365 (717)
-. .+... ...+........++..++..|.+.. ....+.+||+.+..... ..... ....+..+..+ +. +.
T Consensus 202 ~v~tl~~H---~~~~~~~~~w~~~~~~ivt~G~s~s-~Dr~VklWDlr~~~~p~-~~~~~---d~~~~~~~~~~-d~-d~ 271 (493)
T PTZ00421 202 IVSSVEAH---ASAKSQRCLWAKRKDLIITLGCSKS-QQRQIMLWDTRKMASPY-STVDL---DQSSALFIPFF-DE-DT 271 (493)
T ss_pred EEEEEecC---CCCcceEEEEcCCCCeEEEEecCCC-CCCeEEEEeCCCCCCce-eEecc---CCCCceEEEEE-cC-CC
Confidence 22 22111 1111111111123344444444321 12468889986543111 00000 01111222222 22 33
Q ss_pred EEEEEcCCCCCCCCeEEEEEccCCc
Q 005043 366 FLVAFGGIKKEPSNQVEVLSIEKNE 390 (717)
Q Consensus 366 ~I~v~GG~~~~~~n~v~vyd~~~~e 390 (717)
.+++.||.+.. .|.+||+...+
T Consensus 272 ~~L~lggkgDg---~Iriwdl~~~~ 293 (493)
T PTZ00421 272 NLLYIGSKGEG---NIRCFELMNER 293 (493)
T ss_pred CEEEEEEeCCC---eEEEEEeeCCc
Confidence 35555654222 67888887665
No 109
>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=92.35 E-value=2.4 Score=47.17 Aligned_cols=149 Identities=18% Similarity=0.243 Sum_probs=78.5
Q ss_pred EECCEEEEEccccCCCCCcCcEEEEEcCCCceEeccCCCCCCCCCcccEEEEECCcEEEEEcCCCCCCCCCeEEEEECCC
Q 005043 205 RASSVLILFGGEDGKRRKLNDLHMFDLKSLTWLPLHCTGTGPSPRSNHVAALYDDKNLLIFGGSSKSKTLNDLYSLDFET 284 (717)
Q Consensus 205 ~~~~~Lyv~GG~~~~~~~~~~v~~yD~~t~~W~~l~~~g~~P~~R~~~aa~~~~~~~lyV~GG~~~~~~~ndv~~yd~~t 284 (717)
..+|+|+..|+.. ..+-+||.++..--..-..-..|.-+.. .+..++. ++++|+-+. -+-.||..+
T Consensus 77 R~DG~LlaaGD~s------G~V~vfD~k~r~iLR~~~ah~apv~~~~--f~~~d~t-~l~s~sDd~-----v~k~~d~s~ 142 (487)
T KOG0310|consen 77 RSDGRLLAAGDES------GHVKVFDMKSRVILRQLYAHQAPVHVTK--FSPQDNT-MLVSGSDDK-----VVKYWDLST 142 (487)
T ss_pred ecCCeEEEccCCc------CcEEEeccccHHHHHHHhhccCceeEEE--ecccCCe-EEEecCCCc-----eEEEEEcCC
Confidence 3479999999754 4488999665322111000012221111 1223444 888887653 255667666
Q ss_pred CcEEEeecCCCCCCCCcceEEEEECCEEEEEecCCCCCccCeEEEEECCCC-cEEEeecCCCCCCCCCcceEEEEEEeCC
Q 005043 285 MIWTRIKIRGFHPSPRAGCCGVLCGTKWYIAGGGSRKKRHAETLIFDILKG-EWSVAITSPSSSVTSNKGFTLVLVQHKE 363 (717)
Q Consensus 285 ~~W~~v~~~g~~P~~R~~~sav~~~~~IyV~GG~~~~~~~~dv~~yD~~t~-~W~~l~~~p~~~~~~r~g~s~v~v~~~~ 363 (717)
..- .....+..-.-|++ ++...+++|++.||+++. |-.||..+. .|..-- .-..|. -++..+ ++
T Consensus 143 a~v-~~~l~~htDYVR~g-~~~~~~~hivvtGsYDg~-----vrl~DtR~~~~~v~el--nhg~pV----e~vl~l--ps 207 (487)
T KOG0310|consen 143 AYV-QAELSGHTDYVRCG-DISPANDHIVVTGSYDGK-----VRLWDTRSLTSRVVEL--NHGCPV----ESVLAL--PS 207 (487)
T ss_pred cEE-EEEecCCcceeEee-ccccCCCeEEEecCCCce-----EEEEEeccCCceeEEe--cCCCce----eeEEEc--CC
Confidence 653 33333222222332 223347899999999876 888888777 454421 111111 122223 33
Q ss_pred CcEEEEEcCCCCCCCCeEEEEEccC
Q 005043 364 KDFLVAFGGIKKEPSNQVEVLSIEK 388 (717)
Q Consensus 364 ~~~I~v~GG~~~~~~n~v~vyd~~~ 388 (717)
+..|...||. .|-++|..+
T Consensus 208 gs~iasAgGn------~vkVWDl~~ 226 (487)
T KOG0310|consen 208 GSLIASAGGN------SVKVWDLTT 226 (487)
T ss_pred CCEEEEcCCC------eEEEEEecC
Confidence 4556666664 677777663
No 110
>PF10186 Atg14: UV radiation resistance protein and autophagy-related subunit 14; InterPro: IPR018791 Class III phosphatidylinositol 3-kinase (PI3-kinase) regulates multiple membrane trafficking. In yeast, two distinct PI3-kinase complexes are known: complex I (Vps34, Vps15, Vps30/Atg6, and Atg14) is involved in autophagy, and complex II (Vps34, Vps15, Vps30/Atg6, and Vps38) functions in the vacuolar protein sorting pathway. In mammals, the counterparts of Vps34, Vps15, and Vps30/Atg6 are Vps34, p150, and Beclin 1, respectively. Mammalian UV irradiation resistance-associated gene (UVRAG) has been identified as identical to yeast Vps38 []. The Atg14 (autophagy-related protein 14) proteins are hydrophilic proteins and have a coiled-coil motif at the N terminus region. Yeast cells with mutant Atg14 are defective not only in autophagy but also in sorting of carboxypeptidase Y (CPY), a vacuolar-soluble hydrolase, to the vacuole []. This entry represents Atg14 and UVRAG, which bind Beclin 1 to forms two distinct PI3-kinase complexes. This entry also includes Bakor (beclin-1-associated autophagy-related key regulator), also known as autophagy-related protein 14-like protein, which share sequence similarity to the yeast Atg14 protein []. Barkor positively regulates autophagy through its interaction with Beclin-1, with decreased levels of autophagosome formation observed when Barkor expression is eliminated []. Autophagy mediates the cellular response to nutrient deprivation, protein aggregation, and pathogen invasion in humans, and malfunction of autophagy has been implicated in multiple human diseases including cancer. ; GO: 0010508 positive regulation of autophagy
Probab=92.06 E-value=0.63 Score=49.53 Aligned_cols=131 Identities=18% Similarity=0.224 Sum_probs=62.0
Q ss_pred HHHHHHHHHHHHHhcchhHHHHHHHh-----hHHHHHh---hhhhHHhhHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhh
Q 005043 569 QFYESKMAALIRKNGILEGQLAAALV-----NREAAEK---NFSSVLKSRQEMEKKLADSLKEMELLKEKLAGLELAQEE 640 (717)
Q Consensus 569 ~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~e~---~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 640 (717)
.....+++.+...++.|..++.++++ .+..++. .+...-.-...++.+++...++++.+|++++.+..+-+.
T Consensus 23 ~~~~~~l~~~~~~~~~l~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~r~~~l~~~i~~~~~~i~~~r~~l~~~~~~l~~ 102 (302)
T PF10186_consen 23 LELRSELQQLKEENEELRRRIEEILESDSNGQLLEIQQLKREIEELRERLERLRERIERLRKRIEQKRERLEELRESLEQ 102 (302)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45567788899999999999999888 3333322 222222233334444444444444444444443333222
Q ss_pred hcc-cccccccCCccchhhHHHHHHHHHHHHHHhhhhccchhhccccceeeEEEeehhhhh
Q 005043 641 ANS-LSNIVHSDNVRLEHDVAFLKAVLDDTQKELHSTRGVLAGERARAFQLQVEVFHLKQR 700 (717)
Q Consensus 641 ~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 700 (717)
..+ |. .-..---.....+.-++.-+++++..|+.....++.-|.+-++.-.+||-+++.
T Consensus 103 ~~~~l~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~l~~~r~~l~~~l~~ifpI~~~ 162 (302)
T PF10186_consen 103 RRSRLS-ASQDLVESRQEQLEELQNELEERKQRLSQLQSQLARRRRQLIQELSEIFPIEQV 162 (302)
T ss_pred HHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCceee
Confidence 111 22 000000112223333444444444444444444555555544444555555444
No 111
>COG1520 FOG: WD40-like repeat [Function unknown]
Probab=91.78 E-value=24 Score=38.85 Aligned_cols=201 Identities=16% Similarity=0.162 Sum_probs=101.0
Q ss_pred EEECCEEEEEcccCCCCCcccEEEEEcCCCc--eEEccccccCCCCCCCCCCCcccceEEEEECCEEEEEeccCCCCCCc
Q 005043 95 AVIGNKMIVVGGESGNGLLDDVQVLNFDRFS--WTAASSKLYLSPSSLPLKIPACRGHSLISWGKKVLLVGGKTDSGSDR 172 (717)
Q Consensus 95 v~~~~~lyV~GG~~~~~~~~~v~~yd~~t~~--W~~l~~~~~~~~~~~~~~~p~r~~hs~v~~~~~Iyv~GG~~~~~~~~ 172 (717)
+..++++|+.. ..+ .++.+|+.+.. |+..... ............+++||+-... .
T Consensus 65 ~~~dg~v~~~~---~~G---~i~A~d~~~g~~~W~~~~~~-----------~~~~~~~~~~~~~G~i~~g~~~-g----- 121 (370)
T COG1520 65 ADGDGTVYVGT---RDG---NIFALNPDTGLVKWSYPLLG-----------AVAQLSGPILGSDGKIYVGSWD-G----- 121 (370)
T ss_pred EeeCCeEEEec---CCC---cEEEEeCCCCcEEecccCcC-----------cceeccCceEEeCCeEEEeccc-c-----
Confidence 66788899871 111 78999999875 9765441 0001111122226776654332 2
Q ss_pred eEEEEEECCC--CcEEEeeecCCCCCCceeeEEEEECCEEEEEccccCCCCCcCcEEEEEcCCC--ceEeccCCCCCCCC
Q 005043 173 VSVWTFDTET--ECWSVVEAKGDIPVARSGHTVVRASSVLILFGGEDGKRRKLNDLHMFDLKSL--TWLPLHCTGTGPSP 248 (717)
Q Consensus 173 ~~v~~yD~~t--~~W~~l~~~g~~P~~R~~hs~~~~~~~Lyv~GG~~~~~~~~~~v~~yD~~t~--~W~~l~~~g~~P~~ 248 (717)
.+++||..+ ..|+.-... . .+.....+..++.+|+.- ..+.++.+|..+. .|..-...+ .+ .
T Consensus 122 -~~y~ld~~~G~~~W~~~~~~---~-~~~~~~~v~~~~~v~~~s-------~~g~~~al~~~tG~~~W~~~~~~~-~~-~ 187 (370)
T COG1520 122 -KLYALDASTGTLVWSRNVGG---S-PYYASPPVVGDGTVYVGT-------DDGHLYALNADTGTLKWTYETPAP-LS-L 187 (370)
T ss_pred -eEEEEECCCCcEEEEEecCC---C-eEEecCcEEcCcEEEEec-------CCCeEEEEEccCCcEEEEEecCCc-cc-c
Confidence 699999964 458876531 1 444444445556666652 1356888888755 487443211 22 2
Q ss_pred CcccEEEEECCcEEEEEcCCCCCCCCCeEEEEECCCCc--EEEeecCCCCCCCCcce--EEEEECCEEEEEecCCCCCcc
Q 005043 249 RSNHVAALYDDKNLLIFGGSSKSKTLNDLYSLDFETMI--WTRIKIRGFHPSPRAGC--CGVLCGTKWYIAGGGSRKKRH 324 (717)
Q Consensus 249 R~~~aa~~~~~~~lyV~GG~~~~~~~ndv~~yd~~t~~--W~~v~~~g~~P~~R~~~--sav~~~~~IyV~GG~~~~~~~ 324 (717)
+.....+ ..+..+|+ |..+ . ...++.+|+.+++ |..-... +..+..- .....++.||+-||.......
T Consensus 188 ~~~~~~~-~~~~~vy~-~~~~--~-~~~~~a~~~~~G~~~w~~~~~~---~~~~~~~~~~~~~~~~~v~v~~~~~~~~~~ 259 (370)
T COG1520 188 SIYGSPA-IASGTVYV-GSDG--Y-DGILYALNAEDGTLKWSQKVSQ---TIGRTAISTTPAVDGGPVYVDGGVYAGSYG 259 (370)
T ss_pred ccccCce-eecceEEE-ecCC--C-cceEEEEEccCCcEeeeeeeec---ccCcccccccccccCceEEECCcEEEEecC
Confidence 2222222 44442444 4332 1 2369999996654 7743221 1111111 112223444444442111112
Q ss_pred CeEEEEECCCC--cEEEe
Q 005043 325 AETLIFDILKG--EWSVA 340 (717)
Q Consensus 325 ~dv~~yD~~t~--~W~~l 340 (717)
..++++|..+. .|+.-
T Consensus 260 g~~~~l~~~~G~~~W~~~ 277 (370)
T COG1520 260 GKLLCLDADTGELIWSFP 277 (370)
T ss_pred CeEEEEEcCCCceEEEEe
Confidence 34778887654 57763
No 112
>PF15188 CCDC-167: Coiled-coil domain-containing protein 167
Probab=91.55 E-value=0.38 Score=41.25 Aligned_cols=74 Identities=32% Similarity=0.447 Sum_probs=60.3
Q ss_pred hHHhhHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhcccccccccCCccchhhHHHHHHHHHHHHHHhhhhccchhhcc
Q 005043 605 SVLKSRQEMEKKLADSLKEMELLKEKLAGLELAQEEANSLSNIVHSDNVRLEHDVAFLKAVLDDTQKELHSTRGVLAGER 684 (717)
Q Consensus 605 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 684 (717)
+|.+..+.+|+|++.-.+.+|.+.-||.+.|+--|+.- .||.|..-||.+|+.-+|||+.-|+ |=
T Consensus 2 ~V~~eId~lEekl~~cr~~le~ve~rL~~~eLs~e~R~-----------~lE~E~~~l~~~l~~~E~eL~~Lrk----EN 66 (85)
T PF15188_consen 2 SVAKEIDGLEEKLAQCRRRLEAVESRLRRRELSPEARR-----------SLEKELNELKEKLENNEKELKLLRK----EN 66 (85)
T ss_pred cHHHHHhhHHHHHHHHHHHHHHHHHHHcccCCChHHHH-----------HHHHHHHHHHHHhhccHHHHHHHHH----hh
Confidence 46677889999999999999999999999887666554 4789999999999999999999887 65
Q ss_pred ccceeeEEE
Q 005043 685 ARAFQLQVE 693 (717)
Q Consensus 685 ~~~~~~~~~ 693 (717)
.+.|=|.|=
T Consensus 67 rK~~~ls~~ 75 (85)
T PF15188_consen 67 RKSMLLSVA 75 (85)
T ss_pred hhhHHHHHH
Confidence 555554443
No 113
>PRK03629 tolB translocation protein TolB; Provisional
Probab=91.52 E-value=28 Score=39.24 Aligned_cols=189 Identities=9% Similarity=0.012 Sum_probs=94.7
Q ss_pred ccEEEEEcCCCceEEccccccCCCCCCCCCCCcccceEEEEE-CCEEEEEeccCCCCCCceEEEEEECCCCcEEEeeecC
Q 005043 114 DDVQVLNFDRFSWTAASSKLYLSPSSLPLKIPACRGHSLISW-GKKVLLVGGKTDSGSDRVSVWTFDTETECWSVVEAKG 192 (717)
Q Consensus 114 ~~v~~yd~~t~~W~~l~~~~~~~~~~~~~~~p~r~~hs~v~~-~~~Iyv~GG~~~~~~~~~~v~~yD~~t~~W~~l~~~g 192 (717)
..++++|+.+++-..+... +.........- +.+|++..... ...++|.+|+.+...+.+...
T Consensus 223 ~~i~i~dl~~G~~~~l~~~------------~~~~~~~~~SPDG~~La~~~~~~----g~~~I~~~d~~tg~~~~lt~~- 285 (429)
T PRK03629 223 SALVIQTLANGAVRQVASF------------PRHNGAPAFSPDGSKLAFALSKT----GSLNLYVMDLASGQIRQVTDG- 285 (429)
T ss_pred cEEEEEECCCCCeEEccCC------------CCCcCCeEECCCCCEEEEEEcCC----CCcEEEEEECCCCCEEEccCC-
Confidence 3678888877765555431 11111111222 34555543321 123699999999888776531
Q ss_pred CCCCCceeeEEEE-ECCEEEEEccccCCCCCcCcEEEEEcCCCceEeccCCCCCCCCCcccEEEEECCcEEEEEcCCCCC
Q 005043 193 DIPVARSGHTVVR-ASSVLILFGGEDGKRRKLNDLHMFDLKSLTWLPLHCTGTGPSPRSNHVAALYDDKNLLIFGGSSKS 271 (717)
Q Consensus 193 ~~P~~R~~hs~~~-~~~~Lyv~GG~~~~~~~~~~v~~yD~~t~~W~~l~~~g~~P~~R~~~aa~~~~~~~lyV~GG~~~~ 271 (717)
+.. . ..... -+++.++|..... + ...+|.+|+.+.....+...+ .........-+++.|++.+..++
T Consensus 286 --~~~-~-~~~~wSPDG~~I~f~s~~~-g--~~~Iy~~d~~~g~~~~lt~~~----~~~~~~~~SpDG~~Ia~~~~~~g- 353 (429)
T PRK03629 286 --RSN-N-TEPTWFPDSQNLAYTSDQA-G--RPQVYKVNINGGAPQRITWEG----SQNQDADVSSDGKFMVMVSSNGG- 353 (429)
T ss_pred --CCC-c-CceEECCCCCEEEEEeCCC-C--CceEEEEECCCCCeEEeecCC----CCccCEEECCCCCEEEEEEccCC-
Confidence 111 1 11222 2344333332211 1 247999999888777664211 11112222334554444443222
Q ss_pred CCCCeEEEEECCCCcEEEeecCCCCCCCCcceEEEEECCEEEEEecCCCCCccCeEEEEECCCCcEEEe
Q 005043 272 KTLNDLYSLDFETMIWTRIKIRGFHPSPRAGCCGVLCGTKWYIAGGGSRKKRHAETLIFDILKGEWSVA 340 (717)
Q Consensus 272 ~~~ndv~~yd~~t~~W~~v~~~g~~P~~R~~~sav~~~~~IyV~GG~~~~~~~~dv~~yD~~t~~W~~l 340 (717)
...++.+|+.++.++.+.... ........-+++.+++.+..+. ...++..+.+...=..+
T Consensus 354 --~~~I~~~dl~~g~~~~Lt~~~-----~~~~p~~SpDG~~i~~~s~~~~--~~~l~~~~~~G~~~~~l 413 (429)
T PRK03629 354 --QQHIAKQDLATGGVQVLTDTF-----LDETPSIAPNGTMVIYSSSQGM--GSVLNLVSTDGRFKARL 413 (429)
T ss_pred --CceEEEEECCCCCeEEeCCCC-----CCCCceECCCCCEEEEEEcCCC--ceEEEEEECCCCCeEEC
Confidence 246999999999988876421 1111112246666666665433 23466667655443333
No 114
>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3.1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.
Probab=91.45 E-value=24 Score=38.40 Aligned_cols=250 Identities=15% Similarity=0.149 Sum_probs=117.3
Q ss_pred EEcccCCCCCccc--EEEEEcCCCceEEccccccCCCCCCCCCCCcccceEEEEECCEEEEEeccCCCCCCceEEEEEEC
Q 005043 103 VVGGESGNGLLDD--VQVLNFDRFSWTAASSKLYLSPSSLPLKIPACRGHSLISWGKKVLLVGGKTDSGSDRVSVWTFDT 180 (717)
Q Consensus 103 V~GG~~~~~~~~~--v~~yd~~t~~W~~l~~~~~~~~~~~~~~~p~r~~hs~v~~~~~Iyv~GG~~~~~~~~~~v~~yD~ 180 (717)
++|+++. +.... ++.||..+.++..+..... ...-..-+.-.-++.||+..... .....-..+.++.
T Consensus 3 ~vgsy~~-~~~~gI~~~~~d~~~g~l~~~~~~~~---------~~~Ps~l~~~~~~~~LY~~~e~~-~~~g~v~~~~i~~ 71 (345)
T PF10282_consen 3 YVGSYTN-GKGGGIYVFRFDEETGTLTLVQTVAE---------GENPSWLAVSPDGRRLYVVNEGS-GDSGGVSSYRIDP 71 (345)
T ss_dssp EEEECCS-SSSTEEEEEEEETTTTEEEEEEEEEE---------SSSECCEEE-TTSSEEEEEETTS-STTTEEEEEEEET
T ss_pred EEEcCCC-CCCCcEEEEEEcCCCCCceEeeeecC---------CCCCceEEEEeCCCEEEEEEccc-cCCCCEEEEEECC
Confidence 4566553 12233 4555668889987765210 11111111112357788885542 1122224555556
Q ss_pred CCCcEEEeeecCCCC-CCceeeEEEE--ECCEEEEEccccCCCCCcCcEEEEEcCCC-ceEec------cCCCCCC---C
Q 005043 181 ETECWSVVEAKGDIP-VARSGHTVVR--ASSVLILFGGEDGKRRKLNDLHMFDLKSL-TWLPL------HCTGTGP---S 247 (717)
Q Consensus 181 ~t~~W~~l~~~g~~P-~~R~~hs~~~--~~~~Lyv~GG~~~~~~~~~~v~~yD~~t~-~W~~l------~~~g~~P---~ 247 (717)
.+.+.+.+.. .+ .....+.++. .+..||+.- +. .+.+.+|++..+ .-... ...++-| .
T Consensus 72 ~~g~L~~~~~---~~~~g~~p~~i~~~~~g~~l~van-y~-----~g~v~v~~l~~~g~l~~~~~~~~~~g~g~~~~rq~ 142 (345)
T PF10282_consen 72 DTGTLTLLNS---VPSGGSSPCHIAVDPDGRFLYVAN-YG-----GGSVSVFPLDDDGSLGEVVQTVRHEGSGPNPDRQE 142 (345)
T ss_dssp TTTEEEEEEE---EEESSSCEEEEEECTTSSEEEEEE-TT-----TTEEEEEEECTTSEEEEEEEEEESEEEESSTTTTS
T ss_pred CcceeEEeee---eccCCCCcEEEEEecCCCEEEEEE-cc-----CCeEEEEEccCCcccceeeeecccCCCCCcccccc
Confidence 5578887764 23 2222222222 234566652 11 345777777653 22111 0011111 1
Q ss_pred CCcccEEEEEC-CcEEEEEcCCCCCCCCCeEEEEECCCCc--EEEeecCCCCCCCCc-ceEEEEE-CCEEEEEecCCCCC
Q 005043 248 PRSNHVAALYD-DKNLLIFGGSSKSKTLNDLYSLDFETMI--WTRIKIRGFHPSPRA-GCCGVLC-GTKWYIAGGGSRKK 322 (717)
Q Consensus 248 ~R~~~aa~~~~-~~~lyV~GG~~~~~~~ndv~~yd~~t~~--W~~v~~~g~~P~~R~-~~sav~~-~~~IyV~GG~~~~~ 322 (717)
.-.-|.+.... ++.+|+..= -.+.|++|+.+... ....... ..|..-. .|.+..- +..+||+...+
T Consensus 143 ~~h~H~v~~~pdg~~v~v~dl-----G~D~v~~~~~~~~~~~l~~~~~~-~~~~G~GPRh~~f~pdg~~~Yv~~e~s--- 213 (345)
T PF10282_consen 143 GPHPHQVVFSPDGRFVYVPDL-----GADRVYVYDIDDDTGKLTPVDSI-KVPPGSGPRHLAFSPDGKYAYVVNELS--- 213 (345)
T ss_dssp STCEEEEEE-TTSSEEEEEET-----TTTEEEEEEE-TTS-TEEEEEEE-ECSTTSSEEEEEE-TTSSEEEEEETTT---
T ss_pred cccceeEEECCCCCEEEEEec-----CCCEEEEEEEeCCCceEEEeecc-ccccCCCCcEEEEcCCcCEEEEecCCC---
Confidence 22334455543 456776531 14679999887665 6553322 1122211 2322222 46899998654
Q ss_pred ccCeEEEEECC--CCcEEEeecCCCCC--CCCCcceEEEEEEeCCCcEEEEEcCCCCCCCCeEEEEEccC
Q 005043 323 RHAETLIFDIL--KGEWSVAITSPSSS--VTSNKGFTLVLVQHKEKDFLVAFGGIKKEPSNQVEVLSIEK 388 (717)
Q Consensus 323 ~~~dv~~yD~~--t~~W~~l~~~p~~~--~~~r~g~s~v~v~~~~~~~I~v~GG~~~~~~n~v~vyd~~~ 388 (717)
+.|.+|+.. +..|+.+...+... .......+.+.+ .+++.+||+.-.. .+.|.+|+++.
T Consensus 214 --~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~i-spdg~~lyvsnr~----~~sI~vf~~d~ 276 (345)
T PF10282_consen 214 --NTVSVFDYDPSDGSLTEIQTISTLPEGFTGENAPAEIAI-SPDGRFLYVSNRG----SNSISVFDLDP 276 (345)
T ss_dssp --TEEEEEEEETTTTEEEEEEEEESCETTSCSSSSEEEEEE--TTSSEEEEEECT----TTEEEEEEECT
T ss_pred --CcEEEEeecccCCceeEEEEeeeccccccccCCceeEEE-ecCCCEEEEEecc----CCEEEEEEEec
Confidence 345555554 66776654322211 112223333344 3456677764322 45888999843
No 115
>PRK10884 SH3 domain-containing protein; Provisional
Probab=91.31 E-value=1.4 Score=44.62 Aligned_cols=81 Identities=22% Similarity=0.206 Sum_probs=53.2
Q ss_pred HHHHHhcchhHHHHHHHhhHHHHHhhhhhHHhhHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhcccccccccCCccch
Q 005043 577 ALIRKNGILEGQLAAALVNREAAEKNFSSVLKSRQEMEKKLADSLKEMELLKEKLAGLELAQEEANSLSNIVHSDNVRLE 656 (717)
Q Consensus 577 ~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 656 (717)
.+..+...||.||+++.+...++..... ....+|+.++++.....+.|+++.+.+...-++ +.
T Consensus 90 ~~~~rlp~le~el~~l~~~l~~~~~~~~---~~~~~l~~~~~~~~~~~~~L~~~n~~L~~~l~~--------------~~ 152 (206)
T PRK10884 90 SLRTRVPDLENQVKTLTDKLNNIDNTWN---QRTAEMQQKVAQSDSVINGLKEENQKLKNQLIV--------------AQ 152 (206)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHhHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------------HH
Confidence 3445556777777777777766666544 556677777777777777777776666433222 45
Q ss_pred hhHHHHHHHHHHHHHHhh
Q 005043 657 HDVAFLKAVLDDTQKELH 674 (717)
Q Consensus 657 ~~~~~~~~~~~~~~~~~~ 674 (717)
.++..|+|-+|+.|++..
T Consensus 153 ~~~~~l~~~~~~~~~~~~ 170 (206)
T PRK10884 153 KKVDAANLQLDDKQRTII 170 (206)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 577777777877777653
No 116
>PF02191 OLF: Olfactomedin-like domain; InterPro: IPR003112 The olfactomedin-domain was first identified in olfactomedin, an extracellular matrix protein of the olfactory neuroepithelium []. Members of this extracellular domain-family have since been shown to be present in several metazoan proteins, such as latrophilins, myocilins, optimedins and noelins, the latter being involved in the generation of neural crest cells. Myocilin is of considerable interest, as mutations in its olfactomedin-domain can lead to glaucoma []. The olfactomedin-domains in myocilin and optimedin are essential for the interaction between these two proteins [].; GO: 0005515 protein binding
Probab=91.30 E-value=18 Score=37.72 Aligned_cols=184 Identities=16% Similarity=0.127 Sum_probs=101.0
Q ss_pred CCEEEEEcccCCCCCcccEEEEEcCC-----CceEEccccccCCCCCCCCCCCcccceEEEEECCEEEEEeccCCCCCCc
Q 005043 98 GNKMIVVGGESGNGLLDDVQVLNFDR-----FSWTAASSKLYLSPSSLPLKIPACRGHSLISWGKKVLLVGGKTDSGSDR 172 (717)
Q Consensus 98 ~~~lyV~GG~~~~~~~~~v~~yd~~t-----~~W~~l~~~~~~~~~~~~~~~p~r~~hs~v~~~~~Iyv~GG~~~~~~~~ 172 (717)
.+++|++.|..+. .++.|.-.. +.+...-. +| -+..|.+.+++++.+|.--. ..
T Consensus 30 ~~~iy~~~~~~~~----~v~ey~~~~~f~~~~~~~~~~~----------Lp-~~~~GtG~vVYngslYY~~~------~s 88 (250)
T PF02191_consen 30 SEKIYVTSGFSGN----TVYEYRNYEDFLRNGRSSRTYK----------LP-YPWQGTGHVVYNGSLYYNKY------NS 88 (250)
T ss_pred CCCEEEECccCCC----EEEEEcCHhHHhhcCCCceEEE----------Ee-ceeccCCeEEECCcEEEEec------CC
Confidence 4679999887654 455553222 22222211 11 13346677888998887643 24
Q ss_pred eEEEEEECCCCcEE-EeeecCCCCCCcee------------eEEEEECCEEEEEccccCCCCCcCcEEEEEcCCC----c
Q 005043 173 VSVWTFDTETECWS-VVEAKGDIPVARSG------------HTVVRASSVLILFGGEDGKRRKLNDLHMFDLKSL----T 235 (717)
Q Consensus 173 ~~v~~yD~~t~~W~-~l~~~g~~P~~R~~------------hs~~~~~~~Lyv~GG~~~~~~~~~~v~~yD~~t~----~ 235 (717)
+.+.+||+.+..-. ... +|.+... .-.++..+-|||+=....+.. .-.+-..|+.+. +
T Consensus 89 ~~IvkydL~t~~v~~~~~----L~~A~~~n~~~y~~~~~t~iD~AvDE~GLWvIYat~~~~g-~ivvskld~~tL~v~~t 163 (250)
T PF02191_consen 89 RNIVKYDLTTRSVVARRE----LPGAGYNNRFPYYWSGYTDIDFAVDENGLWVIYATEDNNG-NIVVSKLDPETLSVEQT 163 (250)
T ss_pred ceEEEEECcCCcEEEEEE----CCccccccccceecCCCceEEEEEcCCCEEEEEecCCCCC-cEEEEeeCcccCceEEE
Confidence 57999999998755 332 2222221 223444567777755443311 123455677654 4
Q ss_pred eEeccCCCCCCCCCcccEEEEECCcEEEEEcCCCCCCCCCeEEEEECCCCcEEEeecCCCCCCCCcceEEEEE---CCEE
Q 005043 236 WLPLHCTGTGPSPRSNHVAALYDDKNLLIFGGSSKSKTLNDLYSLDFETMIWTRIKIRGFHPSPRAGCCGVLC---GTKW 312 (717)
Q Consensus 236 W~~l~~~g~~P~~R~~~aa~~~~~~~lyV~GG~~~~~~~ndv~~yd~~t~~W~~v~~~g~~P~~R~~~sav~~---~~~I 312 (717)
|.. ..+.+..+.+.. +-|- ||++...+... ..-.+.||+.+++=..+... .+.+-..++++.. +.+|
T Consensus 164 w~T-----~~~k~~~~naFm-vCGv-LY~~~s~~~~~-~~I~yafDt~t~~~~~~~i~--f~~~~~~~~~l~YNP~dk~L 233 (250)
T PF02191_consen 164 WNT-----SYPKRSAGNAFM-VCGV-LYATDSYDTRD-TEIFYAFDTYTGKEEDVSIP--FPNPYGNISMLSYNPRDKKL 233 (250)
T ss_pred EEe-----ccCchhhcceee-EeeE-EEEEEECCCCC-cEEEEEEECCCCceeceeee--eccccCceEeeeECCCCCeE
Confidence 653 344444444333 3344 88887665432 33468999988776654432 2333334555554 5789
Q ss_pred EEEec
Q 005043 313 YIAGG 317 (717)
Q Consensus 313 yV~GG 317 (717)
|+.--
T Consensus 234 Y~wd~ 238 (250)
T PF02191_consen 234 YAWDN 238 (250)
T ss_pred EEEEC
Confidence 98874
No 117
>KOG2048 consensus WD40 repeat protein [General function prediction only]
Probab=91.05 E-value=37 Score=39.69 Aligned_cols=119 Identities=17% Similarity=0.182 Sum_probs=65.5
Q ss_pred EEEEECCcEEEEEcCCCCCCCCCeEEEEECCCCcEEEeecCCCCCCCCcceEEEE---ECCEEEEEecCCCCCccCeEEE
Q 005043 253 VAALYDDKNLLIFGGSSKSKTLNDLYSLDFETMIWTRIKIRGFHPSPRAGCCGVL---CGTKWYIAGGGSRKKRHAETLI 329 (717)
Q Consensus 253 aa~~~~~~~lyV~GG~~~~~~~ndv~~yd~~t~~W~~v~~~g~~P~~R~~~sav~---~~~~IyV~GG~~~~~~~~dv~~ 329 (717)
+++...+..++.+|-... -.+|++.++.+. .+......|..+...+... .+++++++- ....+++.
T Consensus 387 ~~aiSPdg~~Ia~st~~~----~~iy~L~~~~~v--k~~~v~~~~~~~~~a~~i~ftid~~k~~~~s-----~~~~~le~ 455 (691)
T KOG2048|consen 387 CAAISPDGNLIAISTVSR----TKIYRLQPDPNV--KVINVDDVPLALLDASAISFTIDKNKLFLVS-----KNIFSLEE 455 (691)
T ss_pred eeccCCCCCEEEEeeccc----eEEEEeccCcce--eEEEeccchhhhccceeeEEEecCceEEEEe-----cccceeEE
Confidence 334444433666664322 135555554422 1111123465555554443 267777776 22346788
Q ss_pred EECCCCcEEEeecCCCCCCCCCcceEEEEEEeCCCcEEEEEcCCCCCCCCeEEEEEccCCc
Q 005043 330 FDILKGEWSVAITSPSSSVTSNKGFTLVLVQHKEKDFLVAFGGIKKEPSNQVEVLSIEKNE 390 (717)
Q Consensus 330 yD~~t~~W~~l~~~p~~~~~~r~g~s~v~v~~~~~~~I~v~GG~~~~~~n~v~vyd~~~~e 390 (717)
++.++.+.+.+...... +....-+.++....+++|.++++.. .|++|+.++.+
T Consensus 456 ~el~~ps~kel~~~~~~---~~~~~I~~l~~SsdG~yiaa~~t~g-----~I~v~nl~~~~ 508 (691)
T KOG2048|consen 456 FELETPSFKELKSIQSQ---AKCPSISRLVVSSDGNYIAAISTRG-----QIFVYNLETLE 508 (691)
T ss_pred EEecCcchhhhhccccc---cCCCcceeEEEcCCCCEEEEEeccc-----eEEEEEcccce
Confidence 88888777776532221 2222222233335688898888764 89999999887
No 118
>PRK02889 tolB translocation protein TolB; Provisional
Probab=91.03 E-value=31 Score=38.83 Aligned_cols=187 Identities=7% Similarity=-0.008 Sum_probs=90.6
Q ss_pred eEEEEEECCCCcEEEeeecCCCCCCceeeEEEEECCEEEEEccccCCCCCcCcEEEEEcCCCceEeccCCCCCCCCCccc
Q 005043 173 VSVWTFDTETECWSVVEAKGDIPVARSGHTVVRASSVLILFGGEDGKRRKLNDLHMFDLKSLTWLPLHCTGTGPSPRSNH 252 (717)
Q Consensus 173 ~~v~~yD~~t~~W~~l~~~g~~P~~R~~hs~~~~~~~Lyv~GG~~~~~~~~~~v~~yD~~t~~W~~l~~~g~~P~~R~~~ 252 (717)
..+|.+|........+... +...... ...-+++.+++...... ...+|++|+.+..=..+. ..+. ....
T Consensus 176 ~~L~~~D~dG~~~~~l~~~---~~~v~~p-~wSPDG~~la~~s~~~~---~~~I~~~dl~~g~~~~l~---~~~g-~~~~ 244 (427)
T PRK02889 176 YQLQISDADGQNAQSALSS---PEPIISP-AWSPDGTKLAYVSFESK---KPVVYVHDLATGRRRVVA---NFKG-SNSA 244 (427)
T ss_pred cEEEEECCCCCCceEeccC---CCCcccc-eEcCCCCEEEEEEccCC---CcEEEEEECCCCCEEEee---cCCC-Cccc
Confidence 4799999876555554321 1111111 11124443444333221 256999999887655553 2221 1112
Q ss_pred EEEEECCcEEEEEcCCCCCCCCCeEEEEECCCCcEEEeecCCCCCCCCcceEEEEECCE-EEEEecCCCCCccCeEEEEE
Q 005043 253 VAALYDDKNLLIFGGSSKSKTLNDLYSLDFETMIWTRIKIRGFHPSPRAGCCGVLCGTK-WYIAGGGSRKKRHAETLIFD 331 (717)
Q Consensus 253 aa~~~~~~~lyV~GG~~~~~~~ndv~~yd~~t~~W~~v~~~g~~P~~R~~~sav~~~~~-IyV~GG~~~~~~~~dv~~yD 331 (717)
....-+++.|++....++ ..++|.+|..+...+.+... . .........-+++ |++.....+ ...+|.+|
T Consensus 245 ~~~SPDG~~la~~~~~~g---~~~Iy~~d~~~~~~~~lt~~---~-~~~~~~~wSpDG~~l~f~s~~~g---~~~Iy~~~ 314 (427)
T PRK02889 245 PAWSPDGRTLAVALSRDG---NSQIYTVNADGSGLRRLTQS---S-GIDTEPFFSPDGRSIYFTSDRGG---APQIYRMP 314 (427)
T ss_pred eEECCCCCEEEEEEccCC---CceEEEEECCCCCcEECCCC---C-CCCcCeEEcCCCCEEEEEecCCC---CcEEEEEE
Confidence 222234554544333222 25799999988877766432 1 1111111222444 544332222 25789999
Q ss_pred CCCCcEEEeecCCCCCCCCCcceEEEEEEeCCCcEEEEEcCCCCCCCCeEEEEEccCCc
Q 005043 332 ILKGEWSVAITSPSSSVTSNKGFTLVLVQHKEKDFLVAFGGIKKEPSNQVEVLSIEKNE 390 (717)
Q Consensus 332 ~~t~~W~~l~~~p~~~~~~r~g~s~v~v~~~~~~~I~v~GG~~~~~~n~v~vyd~~~~e 390 (717)
..+...+.+... ...... ..+. +++..|+.....++. ..++++|+.+.+
T Consensus 315 ~~~g~~~~lt~~------g~~~~~-~~~S-pDG~~Ia~~s~~~g~--~~I~v~d~~~g~ 363 (427)
T PRK02889 315 ASGGAAQRVTFT------GSYNTS-PRIS-PDGKLLAYISRVGGA--FKLYVQDLATGQ 363 (427)
T ss_pred CCCCceEEEecC------CCCcCc-eEEC-CCCCEEEEEEccCCc--EEEEEEECCCCC
Confidence 888777766421 111111 2232 234455544333222 378888987665
No 119
>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]
Probab=90.82 E-value=18 Score=40.58 Aligned_cols=195 Identities=10% Similarity=0.039 Sum_probs=100.2
Q ss_pred CcccEEEEEcCCCceEEccccccCCCCCCCCCCCcccceEEEEECCEEEEEe-ccCCCCCCceEEEEEECCCCcEEEeee
Q 005043 112 LLDDVQVLNFDRFSWTAASSKLYLSPSSLPLKIPACRGHSLISWGKKVLLVG-GKTDSGSDRVSVWTFDTETECWSVVEA 190 (717)
Q Consensus 112 ~~~~v~~yd~~t~~W~~l~~~~~~~~~~~~~~~p~r~~hs~v~~~~~Iyv~G-G~~~~~~~~~~v~~yD~~t~~W~~l~~ 190 (717)
+.+++|.|++.+++=..++....... .++.. -+++-++|. =+........+++.++.+.++-..+..
T Consensus 57 ~~DdlWe~slk~g~~~ritS~lGVvn-------n~kf~-----pdGrkvaf~rv~~~ss~~taDly~v~~e~Ge~kRiTy 124 (668)
T COG4946 57 CCDDLWEYSLKDGKPLRITSGLGVVN-------NPKFS-----PDGRKVAFSRVMLGSSLQTADLYVVPSEDGEAKRITY 124 (668)
T ss_pred echHHHHhhhccCCeeEEecccceec-------cccCC-----CCCcEEEEEEEEecCCCccccEEEEeCCCCcEEEEEE
Confidence 45688999988887666655211110 01110 012211110 011112234589999999998888875
Q ss_pred cCCCCCCceeeEEEE-ECCEEEEEccccCCCCCcCcEEEEEcCCCceEeccCCCCCCCCCcccEEEEECCcEEEEEcCCC
Q 005043 191 KGDIPVARSGHTVVR-ASSVLILFGGEDGKRRKLNDLHMFDLKSLTWLPLHCTGTGPSPRSNHVAALYDDKNLLIFGGSS 269 (717)
Q Consensus 191 ~g~~P~~R~~hs~~~-~~~~Lyv~GG~~~~~~~~~~v~~yD~~t~~W~~l~~~g~~P~~R~~~aa~~~~~~~lyV~GG~~ 269 (717)
-| .+..-.+-. -++.|+|.--....-.....+|..+....+..+++ .+ -.+..++.+. +.++|-..
T Consensus 125 fG----r~fT~VaG~~~dg~iiV~TD~~tPF~q~~~lYkv~~dg~~~e~Ln------lG--pathiv~~dg-~ivigRnt 191 (668)
T COG4946 125 FG----RRFTRVAGWIPDGEIIVSTDFHTPFSQWTELYKVNVDGIKTEPLN------LG--PATHIVIKDG-IIVIGRNT 191 (668)
T ss_pred ec----cccceeeccCCCCCEEEEeccCCCcccceeeeEEccCCceeeecc------CC--ceeeEEEeCC-EEEEccCc
Confidence 32 222222222 25677777443322111223444443333334332 11 1234556677 56666431
Q ss_pred ---------CCCCCCeEEEEECCCCcEEEeecCCCCCCCCcceEEEEECCEEEEEecCCCCCccCeEEEEECCCCcEEE
Q 005043 270 ---------KSKTLNDLYSLDFETMIWTRIKIRGFHPSPRAGCCGVLCGTKWYIAGGGSRKKRHAETLIFDILKGEWSV 339 (717)
Q Consensus 270 ---------~~~~~ndv~~yd~~t~~W~~v~~~g~~P~~R~~~sav~~~~~IyV~GG~~~~~~~~dv~~yD~~t~~W~~ 339 (717)
.++....+|+=.....++.++-.+ + -.-.+-+.++++||.+.-..+- ..+|.-|++.+--+.
T Consensus 192 ydLP~WK~YkGGtrGklWis~d~g~tFeK~vdl---~--~~vS~PmIV~~RvYFlsD~eG~---GnlYSvdldGkDlrr 262 (668)
T COG4946 192 YDLPHWKGYKGGTRGKLWISSDGGKTFEKFVDL---D--GNVSSPMIVGERVYFLSDHEGV---GNLYSVDLDGKDLRR 262 (668)
T ss_pred ccCcccccccCCccceEEEEecCCcceeeeeec---C--CCcCCceEEcceEEEEecccCc---cceEEeccCCchhhh
Confidence 123455677766666677777554 2 1122335679999999876554 457777777655444
No 120
>KOG3478 consensus Prefoldin subunit 6, KE2 family [Posttranslational modification, protein turnover, chaperones]
Probab=90.81 E-value=1.1 Score=39.85 Aligned_cols=78 Identities=35% Similarity=0.571 Sum_probs=56.5
Q ss_pred HHHhhhhhHHhhHHHHHHHHHH---HHHHHHHHHH-----HHhhhhhhh---hhhcccccccccCCccch---hhHHHHH
Q 005043 598 AAEKNFSSVLKSRQEMEKKLAD---SLKEMELLKE-----KLAGLELAQ---EEANSLSNIVHSDNVRLE---HDVAFLK 663 (717)
Q Consensus 598 ~~e~~~~~~~~~~~~~~~~~~~---~~~~~~~l~~-----~~~~~~~~~---~~~~~~~~~~~~~~~~~~---~~~~~~~ 663 (717)
+.+|.++.-+.+||+||-.|.+ .++|.++|.+ ||-|.=|.. |||+. |+ -.||| .|++=+.
T Consensus 16 ~LQk~l~k~~~~rqkle~qL~Enk~V~~Eldlle~d~~VYKliGpvLvkqel~EAr~--nV----~kRlefI~~Eikr~e 89 (120)
T KOG3478|consen 16 NLQKELEKYVESRQKLETQLQENKIVLEELDLLEEDSNVYKLIGPVLVKQELEEART--NV----GKRLEFISKEIKRLE 89 (120)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhcccchHHHHhcchhhHHHHHHHHh--hH----HHHHHHHHHHHHHHH
Confidence 3466777889999999999965 5677777665 555544332 55554 11 24677 7888888
Q ss_pred HHHHHHHHHhhhhccchh
Q 005043 664 AVLDDTQKELHSTRGVLA 681 (717)
Q Consensus 664 ~~~~~~~~~~~~~~~~~~ 681 (717)
+-+.|.|+|+---|+-++
T Consensus 90 ~~i~d~q~e~~k~R~~v~ 107 (120)
T KOG3478|consen 90 NQIRDSQEEFEKQREAVI 107 (120)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 999999999999998776
No 121
>KOG0646 consensus WD40 repeat protein [General function prediction only]
Probab=90.61 E-value=33 Score=38.37 Aligned_cols=39 Identities=10% Similarity=0.132 Sum_probs=26.3
Q ss_pred HHHHHHhhHHHHHhhhhhHHhhHHHHHHHHHHHHHHHHH
Q 005043 588 QLAAALVNREAAEKNFSSVLKSRQEMEKKLADSLKEMEL 626 (717)
Q Consensus 588 ~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~ 626 (717)
+.+++-..|++...+++-.++-..+.+++++++.||+-.
T Consensus 433 ~e~e~~rl~~e~k~~~q~~~~~~k~~~~~~~~i~ee~~~ 471 (476)
T KOG0646|consen 433 LEAEVDRLKTELKRSLQALTHAYKELRNMLEEIYEEHQQ 471 (476)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence 344555566666667777777777777788877776644
No 122
>PF13094 CENP-Q: CENP-Q, a CENPA-CAD centromere complex subunit
Probab=90.60 E-value=1.5 Score=42.53 Aligned_cols=107 Identities=23% Similarity=0.233 Sum_probs=64.3
Q ss_pred HHHHHHHHHHhcchhHHHHHHHhhHHHHHh-------hhhhHHhhHHHHHHHHHHHHHHHHHHHHHHh-hhhhhhhhhcc
Q 005043 572 ESKMAALIRKNGILEGQLAAALVNREAAEK-------NFSSVLKSRQEMEKKLADSLKEMELLKEKLA-GLELAQEEANS 643 (717)
Q Consensus 572 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~-------~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-~~~~~~~~~~~ 643 (717)
......+++++..||.||++++.+.+..++ .+....+..++||++.....++++.+.+|+. -+.........
T Consensus 19 ~~~~e~ll~~~~~LE~qL~~~~~~l~lLq~e~~~~e~~le~d~~~L~~Le~~~~~~~~e~~~~~~~~~~vL~~~~~~~~~ 98 (160)
T PF13094_consen 19 SFDYEQLLDRKRALERQLAANLHQLELLQEEIEKEEAALERDYEYLQELEKNAKALEREREEEEKKAHPVLQLDDSGVLE 98 (160)
T ss_pred cccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhhccccccccc
Confidence 345567889999999999988777666555 5556677777888888888888888777742 22222222222
Q ss_pred ccccccc---------CCccc-hhhHHHHHHHHHHHHHHhhhhccchh
Q 005043 644 LSNIVHS---------DNVRL-EHDVAFLKAVLDDTQKELHSTRGVLA 681 (717)
Q Consensus 644 ~~~~~~~---------~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~ 681 (717)
+...++. ++..+ ..|+ +.++...++-|+|-++=++
T Consensus 99 ~~~~~~~~~~~~~~~~~~~~l~d~el---~~l~~ql~~hl~s~~~n~~ 143 (160)
T PF13094_consen 99 LPELPQKSLLEASESRFAPTLCDEEL---LPLLKQLNKHLESMQNNLQ 143 (160)
T ss_pred cccccccccccccccccCcccchHHH---HHHHHHHHHHHHHHHccHH
Confidence 2111111 23444 3444 4444455577777776554
No 123
>PF13851 GAS: Growth-arrest specific micro-tubule binding
Probab=90.47 E-value=2.2 Score=43.09 Aligned_cols=74 Identities=18% Similarity=0.259 Sum_probs=51.0
Q ss_pred chHHHHHHHHHHHHHHHhcchhHHHHHHHhhHHHHHhhhhhHHhhHHHHHHHHHHHHHHHHHHHHHHhhhhhhh
Q 005043 565 SSIYQFYESKMAALIRKNGILEGQLAAALVNREAAEKNFSSVLKSRQEMEKKLADSLKEMELLKEKLAGLELAQ 638 (717)
Q Consensus 565 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 638 (717)
.+|-.+|.+=...-+..-..|..|+++.-.--+..+|.++.+......|-+-|+.+.+|++.|+.+++.-+.-+
T Consensus 12 ~~iK~YYndIT~~NL~lIksLKeei~emkk~e~~~~k~m~ei~~eN~~L~epL~~a~~e~~eL~k~L~~y~kdK 85 (201)
T PF13851_consen 12 QEIKNYYNDITLNNLELIKSLKEEIAEMKKKEERNEKLMAEISQENKRLSEPLKKAEEEVEELRKQLKNYEKDK 85 (201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555666555555555556777777777777777777777777777777777777777777777777666443
No 124
>PF08581 Tup_N: Tup N-terminal; InterPro: IPR013890 The N-terminal region of the Tup protein has been shown to interact with the Ssn6 transcriptional co-repressor []. ; PDB: 3VP9_B 3VP8_B.
Probab=90.12 E-value=1.9 Score=36.73 Aligned_cols=69 Identities=25% Similarity=0.361 Sum_probs=54.1
Q ss_pred HHHHHhhHHHHHhhhhhHHhhHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhcccccccccCCccchhhHHHHHHHHH
Q 005043 589 LAAALVNREAAEKNFSSVLKSRQEMEKKLADSLKEMELLKEKLAGLELAQEEANSLSNIVHSDNVRLEHDVAFLKAVLD 667 (717)
Q Consensus 589 ~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 667 (717)
|++.-++-+.+-+.+++.-..+.++|.|++.-..||+.+|.||-.+|.++...-. .-|-|++=||+=|+
T Consensus 6 Ld~ir~Ef~~~~~e~~~~k~~~~e~e~ki~~Qi~Em~~ir~~v~eLE~~h~kmK~----------~YEeEI~rLr~eLe 74 (79)
T PF08581_consen 6 LDAIRQEFENLSQEANSYKHQKDEYEHKINSQIQEMQQIRQKVYELEQAHRKMKQ----------QYEEEIARLRRELE 74 (79)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHH
Confidence 5566677777777777777799999999999999999999999999999854433 33666776766554
No 125
>PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A ....
Probab=90.07 E-value=35 Score=37.93 Aligned_cols=205 Identities=19% Similarity=0.178 Sum_probs=109.0
Q ss_pred CCEEEEEeccCCCCCCceEEEEEECCCCcEEEeeecCCCCCCceeeEEEEEC-CEEEEEccccCCC-----CCcCcEEEE
Q 005043 156 GKKVLLVGGKTDSGSDRVSVWTFDTETECWSVVEAKGDIPVARSGHTVVRAS-SVLILFGGEDGKR-----RKLNDLHMF 229 (717)
Q Consensus 156 ~~~Iyv~GG~~~~~~~~~~v~~yD~~t~~W~~l~~~g~~P~~R~~hs~~~~~-~~Lyv~GG~~~~~-----~~~~~v~~y 229 (717)
+++.++++=. ..+.....++++|+.+++...-. ++.+.... ++..+ +..+++...+... .....++++
T Consensus 134 dg~~la~~~s-~~G~e~~~l~v~Dl~tg~~l~d~----i~~~~~~~-~~W~~d~~~~~y~~~~~~~~~~~~~~~~~v~~~ 207 (414)
T PF02897_consen 134 DGKRLAYSLS-DGGSEWYTLRVFDLETGKFLPDG----IENPKFSS-VSWSDDGKGFFYTRFDEDQRTSDSGYPRQVYRH 207 (414)
T ss_dssp TSSEEEEEEE-ETTSSEEEEEEEETTTTEEEEEE----EEEEESEE-EEECTTSSEEEEEECSTTTSS-CCGCCEEEEEE
T ss_pred CCCEEEEEec-CCCCceEEEEEEECCCCcCcCCc----ccccccce-EEEeCCCCEEEEEEeCcccccccCCCCcEEEEE
Confidence 5666666433 33445668999999999654322 23232222 55554 3555555544432 236779999
Q ss_pred EcCCCceE--eccCCCCCCCCCc--ccEEEEECCcEEEEEcCCCCCCCCCeEEEEECCCC-----cEEEeecCCCCCCCC
Q 005043 230 DLKSLTWL--PLHCTGTGPSPRS--NHVAALYDDKNLLIFGGSSKSKTLNDLYSLDFETM-----IWTRIKIRGFHPSPR 300 (717)
Q Consensus 230 D~~t~~W~--~l~~~g~~P~~R~--~~aa~~~~~~~lyV~GG~~~~~~~ndv~~yd~~t~-----~W~~v~~~g~~P~~R 300 (717)
.+.+..-. .+- ..+.... ......-++++|+|.-+.. .. .++++.+|.... .|..+... ..-
T Consensus 208 ~~gt~~~~d~lvf---e~~~~~~~~~~~~~s~d~~~l~i~~~~~-~~-~s~v~~~d~~~~~~~~~~~~~l~~~----~~~ 278 (414)
T PF02897_consen 208 KLGTPQSEDELVF---EEPDEPFWFVSVSRSKDGRYLFISSSSG-TS-ESEVYLLDLDDGGSPDAKPKLLSPR----EDG 278 (414)
T ss_dssp ETTS-GGG-EEEE---C-TTCTTSEEEEEE-TTSSEEEEEEESS-SS-EEEEEEEECCCTTTSS-SEEEEEES----SSS
T ss_pred ECCCChHhCeeEE---eecCCCcEEEEEEecCcccEEEEEEEcc-cc-CCeEEEEeccccCCCcCCcEEEeCC----CCc
Confidence 98877654 221 1222222 2233333455444433322 22 478999999875 88888652 222
Q ss_pred cceEEEEECCEEEEEecCCCCCccCeEEEEECCCCc---EE-EeecCCCCCCCCCcceEEEEEEeCCCcEEEEEcCCCCC
Q 005043 301 AGCCGVLCGTKWYIAGGGSRKKRHAETLIFDILKGE---WS-VAITSPSSSVTSNKGFTLVLVQHKEKDFLVAFGGIKKE 376 (717)
Q Consensus 301 ~~~sav~~~~~IyV~GG~~~~~~~~dv~~yD~~t~~---W~-~l~~~p~~~~~~r~g~s~v~v~~~~~~~I~v~GG~~~~ 376 (717)
..+.+...++.+||.-..+ .....+..+++.... |. .+. +.. ....--.+.+. +++|++.-=.++
T Consensus 279 ~~~~v~~~~~~~yi~Tn~~--a~~~~l~~~~l~~~~~~~~~~~l~--~~~--~~~~l~~~~~~----~~~Lvl~~~~~~- 347 (414)
T PF02897_consen 279 VEYYVDHHGDRLYILTNDD--APNGRLVAVDLADPSPAEWWTVLI--PED--EDVSLEDVSLF----KDYLVLSYRENG- 347 (414)
T ss_dssp -EEEEEEETTEEEEEE-TT---TT-EEEEEETTSTSGGGEEEEEE----S--SSEEEEEEEEE----TTEEEEEEEETT-
T ss_pred eEEEEEccCCEEEEeeCCC--CCCcEEEEecccccccccceeEEc--CCC--CceeEEEEEEE----CCEEEEEEEECC-
Confidence 3333444589999988633 334678899988765 66 443 111 01111222222 566665544333
Q ss_pred CCCeEEEEEcc
Q 005043 377 PSNQVEVLSIE 387 (717)
Q Consensus 377 ~~n~v~vyd~~ 387 (717)
...+.+|+..
T Consensus 348 -~~~l~v~~~~ 357 (414)
T PF02897_consen 348 -SSRLRVYDLD 357 (414)
T ss_dssp -EEEEEEEETT
T ss_pred -ccEEEEEECC
Confidence 4488999988
No 126
>PF08268 FBA_3: F-box associated domain; InterPro: IPR013187 This domain occurs in a diverse superfamily of genes in plants. Most examples are found C-terminal to an F-box (IPR001810 from INTERPRO), a 60 amino acid motif involved in ubiquitination of target proteins to mark them for degradation. Two-hybid experiments support the idea that most members are interchangeable F-box subunits of SCF E3 complexes []. Some members have two copies of this domain.
Probab=89.99 E-value=9.3 Score=35.28 Aligned_cols=85 Identities=15% Similarity=0.109 Sum_probs=56.1
Q ss_pred EECCcEEEEEcCCCCCCCCCeEEEEECCCCcEEEeecCCCCCCCCcceEEEEECCEEEEEecCCCC-CccCeEEEEE-CC
Q 005043 256 LYDDKNLLIFGGSSKSKTLNDLYSLDFETMIWTRIKIRGFHPSPRAGCCGVLCGTKWYIAGGGSRK-KRHAETLIFD-IL 333 (717)
Q Consensus 256 ~~~~~~lyV~GG~~~~~~~ndv~~yd~~t~~W~~v~~~g~~P~~R~~~sav~~~~~IyV~GG~~~~-~~~~dv~~yD-~~ 333 (717)
.++|- +|-..-. .....+.|..||..+.+|+.+...............+.++|+|-++.-.... ...-++|+++ ..
T Consensus 3 cinGv-ly~~a~~-~~~~~~~IvsFDv~~E~f~~i~~P~~~~~~~~~~~L~~~~G~L~~v~~~~~~~~~~~~iWvLeD~~ 80 (129)
T PF08268_consen 3 CINGV-LYWLAWS-EDSDNNVIVSFDVRSEKFRFIKLPEDPYSSDCSSTLIEYKGKLALVSYNDQGEPDSIDIWVLEDYE 80 (129)
T ss_pred EECcE-EEeEEEE-CCCCCcEEEEEEcCCceEEEEEeeeeeccccCccEEEEeCCeEEEEEecCCCCcceEEEEEeeccc
Confidence 34554 4443332 3334567999999999999887621223456666778889999887765433 2446899984 66
Q ss_pred CCcEEEeec
Q 005043 334 KGEWSVAIT 342 (717)
Q Consensus 334 t~~W~~l~~ 342 (717)
+.+|.+...
T Consensus 81 k~~Wsk~~~ 89 (129)
T PF08268_consen 81 KQEWSKKHI 89 (129)
T ss_pred cceEEEEEE
Confidence 778998643
No 127
>KOG2321 consensus WD40 repeat protein [General function prediction only]
Probab=89.97 E-value=8 Score=44.13 Aligned_cols=127 Identities=13% Similarity=0.143 Sum_probs=65.8
Q ss_pred CCCCcccEEEEECC-cEEEEEcCCCCCCCCCeEEEEECCCCcEEEeecCCCCCCCCcceEEEEECCEEEEEecCCCCCcc
Q 005043 246 PSPRSNHVAALYDD-KNLLIFGGSSKSKTLNDLYSLDFETMIWTRIKIRGFHPSPRAGCCGVLCGTKWYIAGGGSRKKRH 324 (717)
Q Consensus 246 P~~R~~~aa~~~~~-~~lyV~GG~~~~~~~ndv~~yd~~t~~W~~v~~~g~~P~~R~~~sav~~~~~IyV~GG~~~~~~~ 324 (717)
-.|+++.-+++..- +-||+.| .+ ++||+|+++.+.|-..-.. -.+-..+..+.--+.++.+||.++.
T Consensus 131 RIP~~GRDm~y~~~scDly~~g-sg-----~evYRlNLEqGrfL~P~~~---~~~~lN~v~in~~hgLla~Gt~~g~--- 198 (703)
T KOG2321|consen 131 RIPKFGRDMKYHKPSCDLYLVG-SG-----SEVYRLNLEQGRFLNPFET---DSGELNVVSINEEHGLLACGTEDGV--- 198 (703)
T ss_pred ecCcCCccccccCCCccEEEee-cC-----cceEEEEcccccccccccc---ccccceeeeecCccceEEecccCce---
Confidence 34555666665432 2356544 32 4799999999998543211 1111122211123568888886654
Q ss_pred CeEEEEECCCCcEEEeecCCCC---CCCCCcceEEEEEEeCCCcEEEEEcCCCCCCCCeEEEEEccCCc
Q 005043 325 AETLIFDILKGEWSVAITSPSS---SVTSNKGFTLVLVQHKEKDFLVAFGGIKKEPSNQVEVLSIEKNE 390 (717)
Q Consensus 325 ~dv~~yD~~t~~W~~l~~~p~~---~~~~r~g~s~v~v~~~~~~~I~v~GG~~~~~~n~v~vyd~~~~e 390 (717)
|.++|+.+..--.....+.+ .|......+++.+...+++--+.+|-..| .+++||+.+.+
T Consensus 199 --VEfwDpR~ksrv~~l~~~~~v~s~pg~~~~~svTal~F~d~gL~~aVGts~G----~v~iyDLRa~~ 261 (703)
T KOG2321|consen 199 --VEFWDPRDKSRVGTLDAASSVNSHPGGDAAPSVTALKFRDDGLHVAVGTSTG----SVLIYDLRASK 261 (703)
T ss_pred --EEEecchhhhhheeeecccccCCCccccccCcceEEEecCCceeEEeeccCC----cEEEEEcccCC
Confidence 88999977543222222222 12222223344444444343344444332 57888887765
No 128
>PF13088 BNR_2: BNR repeat-like domain; PDB: 2F11_A 2F0Z_A 1VCU_B 2F25_B 1SO7_A 2F29_A 1SNT_A 2F13_A 2F28_A 2F27_A ....
Probab=89.64 E-value=21 Score=37.07 Aligned_cols=232 Identities=17% Similarity=0.182 Sum_probs=108.4
Q ss_pred CCCCeEEeeecCCCC--CCcceeEEEEE--CCEEEEEc--ccCCCCC--cccEEEEEcC-CCceEEccccccCCCCCCCC
Q 005043 72 NSENWMVLSIAGDKP--IPRFNHAAAVI--GNKMIVVG--GESGNGL--LDDVQVLNFD-RFSWTAASSKLYLSPSSLPL 142 (717)
Q Consensus 72 ~s~~W~~l~~~g~~P--~~R~~haav~~--~~~lyV~G--G~~~~~~--~~~v~~yd~~-t~~W~~l~~~~~~~~~~~~~ 142 (717)
....|.....-...+ ..+....+.+. +++|++|. +...... ..-.+....+ ..+|+.......... .
T Consensus 28 ~G~tWs~~~~v~~~~~~~~~~~~p~~~~~~~g~l~l~~~~~~~~~~~~~~~~~~~~S~D~G~TWs~~~~l~~~~~----~ 103 (275)
T PF13088_consen 28 GGKTWSEPRIVADGPKPGRRYGNPSLVVDPDGRLWLFYSAGSSGGGWSGSRIYYSRSTDGGKTWSEPTDLPPGWF----G 103 (275)
T ss_dssp CTTEEEEEEEEETSTBTTCEEEEEEEEEETTSEEEEEEEEEETTESCCTCEEEEEEESSTTSS-EEEEEEHHHCC----C
T ss_pred CCCeeCCCEEEeeccccCCcccCcEEEEeCCCCEEEEEEEccCCCCCCceeEEEEEECCCCCCCCCccccccccc----c
Confidence 456798865422333 33444444443 78888886 3222211 1112355555 358988764211100 0
Q ss_pred CCC-cccceEEEEECCEEEEEeccCCCCCCceEEEEEECC-CCcEEEeeecCCCCCCceeeEEEE-E-CCEEEEEccccC
Q 005043 143 KIP-ACRGHSLISWGKKVLLVGGKTDSGSDRVSVWTFDTE-TECWSVVEAKGDIPVARSGHTVVR-A-SSVLILFGGEDG 218 (717)
Q Consensus 143 ~~p-~r~~hs~v~~~~~Iyv~GG~~~~~~~~~~v~~yD~~-t~~W~~l~~~g~~P~~R~~hs~~~-~-~~~Lyv~GG~~~ 218 (717)
... ...+..+..-++.+++. .+.........+..|... ..+|+...... +.......+.+ . ++.|+++--..
T Consensus 104 ~~~~~~~~~~i~~~~G~l~~~-~~~~~~~~~~~~~~~S~D~G~tW~~~~~~~--~~~~~~e~~~~~~~dG~l~~~~R~~- 179 (275)
T PF13088_consen 104 NFSGPGRGPPIQLPDGRLIAP-YYHESGGSFSAFVYYSDDGGKTWSSGSPIP--DGQGECEPSIVELPDGRLLAVFRTE- 179 (275)
T ss_dssp SCEECSEEEEEEECTTEEEEE-EEEESSCEEEEEEEEESSTTSSEEEEEECE--CSEEEEEEEEEEETTSEEEEEEEEC-
T ss_pred ceeccceeeeeEecCCCEEEE-EeeccccCcceEEEEeCCCCceeecccccc--ccCCcceeEEEECCCCcEEEEEEcc-
Confidence 000 11122234447788776 221111223344555555 45699887511 22234333333 3 56888885443
Q ss_pred CCCCcCcEEEEEcC-CCceEeccCCCCCCCCCcccEEEEECCcEEEEEcCCCCCCCCCeEEEEECCCCcEEEeecCCCCC
Q 005043 219 KRRKLNDLHMFDLK-SLTWLPLHCTGTGPSPRSNHVAALYDDKNLLIFGGSSKSKTLNDLYSLDFETMIWTRIKIRGFHP 297 (717)
Q Consensus 219 ~~~~~~~v~~yD~~-t~~W~~l~~~g~~P~~R~~~aa~~~~~~~lyV~GG~~~~~~~ndv~~yd~~t~~W~~v~~~g~~P 297 (717)
... ...+.+... -.+|+..... .+|.+.....++.+.+..++++.........-.++.-.....+|.........|
T Consensus 180 ~~~--~~~~~~S~D~G~TWs~~~~~-~~~~~~~~~~~~~~~~g~~~~~~~~~~~r~~l~l~~S~D~g~tW~~~~~i~~~~ 256 (275)
T PF13088_consen 180 GND--DIYISRSTDGGRTWSPPQPT-NLPNPNSSISLVRLSDGRLLLVYNNPDGRSNLSLYVSEDGGKTWSRPKTIDDGP 256 (275)
T ss_dssp SST--EEEEEEESSTTSS-EEEEEE-ECSSCCEEEEEEECTTSEEEEEEECSSTSEEEEEEEECTTCEEEEEEEEEEEEE
T ss_pred CCC--cEEEEEECCCCCcCCCceec-ccCcccCCceEEEcCCCCEEEEEECCCCCCceEEEEEeCCCCcCCccEEEeCCC
Confidence 211 223333333 3479976422 456666565656655555666665322211112333333478898765532223
Q ss_pred CCCcceE-EEEE-CCEEEE
Q 005043 298 SPRAGCC-GVLC-GTKWYI 314 (717)
Q Consensus 298 ~~R~~~s-av~~-~~~IyV 314 (717)
...+++. ++.. +++|||
T Consensus 257 ~~~~~Y~~~~~~~dg~l~i 275 (275)
T PF13088_consen 257 NGDSGYPSLTQLPDGKLYI 275 (275)
T ss_dssp -CCEEEEEEEEEETTEEEE
T ss_pred CCcEECCeeEEeCCCcCCC
Confidence 2334443 3444 679986
No 129
>PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2.3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X.
Probab=89.32 E-value=12 Score=39.40 Aligned_cols=160 Identities=20% Similarity=0.102 Sum_probs=93.1
Q ss_pred eEEEE-ECCEEEEEeccCCCCCCceEEEEEECCCCcEEEeeecCCCCCCceeeEEEEECCEEEEEccccCCCCCcCcEEE
Q 005043 150 HSLIS-WGKKVLLVGGKTDSGSDRVSVWTFDTETECWSVVEAKGDIPVARSGHTVVRASSVLILFGGEDGKRRKLNDLHM 228 (717)
Q Consensus 150 hs~v~-~~~~Iyv~GG~~~~~~~~~~v~~yD~~t~~W~~l~~~g~~P~~R~~hs~~~~~~~Lyv~GG~~~~~~~~~~v~~ 228 (717)
-++.. .++.+|.--|..+ .+.+.+||+.|++-.... .+|..-++=+++.++++||..-= ..+.+++
T Consensus 48 QGL~~~~~g~LyESTG~yG----~S~l~~~d~~tg~~~~~~---~l~~~~FgEGit~~~d~l~qLTW------k~~~~f~ 114 (264)
T PF05096_consen 48 QGLEFLDDGTLYESTGLYG----QSSLRKVDLETGKVLQSV---PLPPRYFGEGITILGDKLYQLTW------KEGTGFV 114 (264)
T ss_dssp EEEEEEETTEEEEEECSTT----EEEEEEEETTTSSEEEEE---E-TTT--EEEEEEETTEEEEEES------SSSEEEE
T ss_pred ccEEecCCCEEEEeCCCCC----cEEEEEEECCCCcEEEEE---ECCccccceeEEEECCEEEEEEe------cCCeEEE
Confidence 45555 5789999888753 357999999999865544 37888899999999999999832 2356899
Q ss_pred EEcCCCceEeccCCCCCCCCCcccEEEEECCcEEEEEcCCCCCCCCCeEEEEECCCCcEEE-eecC-CCCCCCCcceEEE
Q 005043 229 FDLKSLTWLPLHCTGTGPSPRSNHVAALYDDKNLLIFGGSSKSKTLNDLYSLDFETMIWTR-IKIR-GFHPSPRAGCCGV 306 (717)
Q Consensus 229 yD~~t~~W~~l~~~g~~P~~R~~~aa~~~~~~~lyV~GG~~~~~~~ndv~~yd~~t~~W~~-v~~~-g~~P~~R~~~sav 306 (717)
||+.+. ..+. ..+.+..+-.++..+ +.+++.-|. +.++.+||++..=.. +... ...|..+- --.-
T Consensus 115 yd~~tl--~~~~---~~~y~~EGWGLt~dg-~~Li~SDGS------~~L~~~dP~~f~~~~~i~V~~~g~pv~~L-NELE 181 (264)
T PF05096_consen 115 YDPNTL--KKIG---TFPYPGEGWGLTSDG-KRLIMSDGS------SRLYFLDPETFKEVRTIQVTDNGRPVSNL-NELE 181 (264)
T ss_dssp EETTTT--EEEE---EEE-SSS--EEEECS-SCEEEE-SS------SEEEEE-TTT-SEEEEEE-EETTEE---E-EEEE
T ss_pred Eccccc--eEEE---EEecCCcceEEEcCC-CEEEEECCc------cceEEECCcccceEEEEEEEECCEECCCc-EeEE
Confidence 999764 4443 344455677777544 448888774 469999998754332 1110 00111111 1122
Q ss_pred EECCEEEEEecCCCCCccCeEEEEECCCCcEEEe
Q 005043 307 LCGTKWYIAGGGSRKKRHAETLIFDILKGEWSVA 340 (717)
Q Consensus 307 ~~~~~IyV~GG~~~~~~~~dv~~yD~~t~~W~~l 340 (717)
.++|.||.= -=..+.|.+.||.+..-...
T Consensus 182 ~i~G~IyAN-----VW~td~I~~Idp~tG~V~~~ 210 (264)
T PF05096_consen 182 YINGKIYAN-----VWQTDRIVRIDPETGKVVGW 210 (264)
T ss_dssp EETTEEEEE-----ETTSSEEEEEETTT-BEEEE
T ss_pred EEcCEEEEE-----eCCCCeEEEEeCCCCeEEEE
Confidence 235554421 11236788999999865543
No 130
>PRK11028 6-phosphogluconolactonase; Provisional
Probab=89.00 E-value=36 Score=36.50 Aligned_cols=240 Identities=11% Similarity=0.059 Sum_probs=105.1
Q ss_pred CCEEEEEcccCCCCCcccEEEEEcC-CCceEEccccccCCCCCCCCCCCcccceEEEEEC-CEEEEEeccCCCCCCceEE
Q 005043 98 GNKMIVVGGESGNGLLDDVQVLNFD-RFSWTAASSKLYLSPSSLPLKIPACRGHSLISWG-KKVLLVGGKTDSGSDRVSV 175 (717)
Q Consensus 98 ~~~lyV~GG~~~~~~~~~v~~yd~~-t~~W~~l~~~~~~~~~~~~~~~p~r~~hs~v~~~-~~Iyv~GG~~~~~~~~~~v 175 (717)
+..||+.++ . .+.+..|++. +..+..+... +.+....|.+..-+ +.+|+.. +. .+.+
T Consensus 46 ~~~lyv~~~-~----~~~i~~~~~~~~g~l~~~~~~----------~~~~~p~~i~~~~~g~~l~v~~-~~-----~~~v 104 (330)
T PRK11028 46 KRHLYVGVR-P----EFRVLSYRIADDGALTFAAES----------PLPGSPTHISTDHQGRFLFSAS-YN-----ANCV 104 (330)
T ss_pred CCEEEEEEC-C----CCcEEEEEECCCCceEEeeee----------cCCCCceEEEECCCCCEEEEEE-cC-----CCeE
Confidence 345777543 2 2457777775 4566554431 11111122222223 4566653 21 2356
Q ss_pred EEEECCCCc--EEEeeecCCCCCCceeeEEEEE--CCEEEEEccccCCCCCcCcEEEEEcCCCc-eEecc-CCCCCCCCC
Q 005043 176 WTFDTETEC--WSVVEAKGDIPVARSGHTVVRA--SSVLILFGGEDGKRRKLNDLHMFDLKSLT-WLPLH-CTGTGPSPR 249 (717)
Q Consensus 176 ~~yD~~t~~--W~~l~~~g~~P~~R~~hs~~~~--~~~Lyv~GG~~~~~~~~~~v~~yD~~t~~-W~~l~-~~g~~P~~R 249 (717)
.+||+.++. ...+.. .+.....|.++.. +..+|+..- ..+.+.+||+.+.. ..... ..-..+.+.
T Consensus 105 ~v~~~~~~g~~~~~~~~---~~~~~~~~~~~~~p~g~~l~v~~~------~~~~v~v~d~~~~g~l~~~~~~~~~~~~g~ 175 (330)
T PRK11028 105 SVSPLDKDGIPVAPIQI---IEGLEGCHSANIDPDNRTLWVPCL------KEDRIRLFTLSDDGHLVAQEPAEVTTVEGA 175 (330)
T ss_pred EEEEECCCCCCCCceee---ccCCCcccEeEeCCCCCEEEEeeC------CCCEEEEEEECCCCcccccCCCceecCCCC
Confidence 777765321 122221 2222234555444 236666531 23568999987632 21100 000111111
Q ss_pred cccEEEEE-CCcEEEEEcCCCCCCCCCeEEEEECC--CCcEEEeecCCCC----CCCCcceEEEEE--CCEEEEEecCCC
Q 005043 250 SNHVAALY-DDKNLLIFGGSSKSKTLNDLYSLDFE--TMIWTRIKIRGFH----PSPRAGCCGVLC--GTKWYIAGGGSR 320 (717)
Q Consensus 250 ~~~aa~~~-~~~~lyV~GG~~~~~~~ndv~~yd~~--t~~W~~v~~~g~~----P~~R~~~sav~~--~~~IyV~GG~~~ 320 (717)
.-+.++.. +++++|+.-.. .+.+.+|+++ +++++.+...... +.++....++.. +..+|+....
T Consensus 176 ~p~~~~~~pdg~~lyv~~~~-----~~~v~v~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~i~~~pdg~~lyv~~~~-- 248 (330)
T PRK11028 176 GPRHMVFHPNQQYAYCVNEL-----NSSVDVWQLKDPHGEIECVQTLDMMPADFSDTRWAADIHITPDGRHLYACDRT-- 248 (330)
T ss_pred CCceEEECCCCCEEEEEecC-----CCEEEEEEEeCCCCCEEEEEEEecCCCcCCCCccceeEEECCCCCEEEEecCC--
Confidence 11123333 44567776432 3567777775 4455443322111 223433233322 3457775321
Q ss_pred CCccCeEEEEEC--CCCcEEEeecCCCCCCCCCcceEEEEEEeCCCcEEEEEcCCCCCCCCeEEEEEcc
Q 005043 321 KKRHAETLIFDI--LKGEWSVAITSPSSSVTSNKGFTLVLVQHKEKDFLVAFGGIKKEPSNQVEVLSIE 387 (717)
Q Consensus 321 ~~~~~dv~~yD~--~t~~W~~l~~~p~~~~~~r~g~s~v~v~~~~~~~I~v~GG~~~~~~n~v~vyd~~ 387 (717)
.+.+.+|++ ....++.+...+.. ..++ .+ .+ .+++.+||+.... .+.|.+|+++
T Consensus 249 ---~~~I~v~~i~~~~~~~~~~~~~~~~-~~p~---~~-~~-~~dg~~l~va~~~----~~~v~v~~~~ 304 (330)
T PRK11028 249 ---ASLISVFSVSEDGSVLSFEGHQPTE-TQPR---GF-NI-DHSGKYLIAAGQK----SHHISVYEID 304 (330)
T ss_pred ---CCeEEEEEEeCCCCeEEEeEEEecc-ccCC---ce-EE-CCCCCEEEEEEcc----CCcEEEEEEc
Confidence 134556655 44456555432221 1122 11 22 2346677775532 2367777664
No 131
>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]
Probab=89.00 E-value=45 Score=37.58 Aligned_cols=235 Identities=12% Similarity=0.125 Sum_probs=120.4
Q ss_pred EEECCEEEEEcccCCCCCcccEEEEEcCCCceEEccccccCCCCCCCCCCCcccceEEEEECCEEEEE--eccCCCCCCc
Q 005043 95 AVIGNKMIVVGGESGNGLLDDVQVLNFDRFSWTAASSKLYLSPSSLPLKIPACRGHSLISWGKKVLLV--GGKTDSGSDR 172 (717)
Q Consensus 95 v~~~~~lyV~GG~~~~~~~~~v~~yd~~t~~W~~l~~~~~~~~~~~~~~~p~r~~hs~v~~~~~Iyv~--GG~~~~~~~~ 172 (717)
+.++++||.+--..+- ..++.-|+..+.-+.-+.- .- +...-+..+++-+|| ||
T Consensus 232 mIV~~RvYFlsD~eG~---GnlYSvdldGkDlrrHTnF------------td-YY~R~~nsDGkrIvFq~~G-------- 287 (668)
T COG4946 232 MIVGERVYFLSDHEGV---GNLYSVDLDGKDLRRHTNF------------TD-YYPRNANSDGKRIVFQNAG-------- 287 (668)
T ss_pred eEEcceEEEEecccCc---cceEEeccCCchhhhcCCc------------hh-ccccccCCCCcEEEEecCC--------
Confidence 4567788877654433 3566667766544443331 00 011111224443333 33
Q ss_pred eEEEEEECCCCcEEEeeecCCCCCCceeeEE------------EEECCEEEEEccccCCCCCcCcEEEEEcCCCceEecc
Q 005043 173 VSVWTFDTETECWSVVEAKGDIPVARSGHTV------------VRASSVLILFGGEDGKRRKLNDLHMFDLKSLTWLPLH 240 (717)
Q Consensus 173 ~~v~~yD~~t~~W~~l~~~g~~P~~R~~hs~------------~~~~~~Lyv~GG~~~~~~~~~~v~~yD~~t~~W~~l~ 240 (717)
++|.|||.++.-+++.. .+|..|..-.. +..++..|++= .-...+++++..+--.++.
T Consensus 288 -dIylydP~td~lekldI--~lpl~rk~k~~k~~~pskyledfa~~~Gd~ia~V-------SRGkaFi~~~~~~~~iqv~ 357 (668)
T COG4946 288 -DIYLYDPETDSLEKLDI--GLPLDRKKKQPKFVNPSKYLEDFAVVNGDYIALV-------SRGKAFIMRPWDGYSIQVG 357 (668)
T ss_pred -cEEEeCCCcCcceeeec--CCccccccccccccCHHHhhhhhccCCCcEEEEE-------ecCcEEEECCCCCeeEEcC
Confidence 69999999999998875 34544322111 11222222221 1233555555333222232
Q ss_pred CCCCCCCCCcccEEEEECCcEEEEEcCCCCCCCCCeEEEEECCCCcEEEeecCCCCCCCCcceEEEEECCEEEEEecCCC
Q 005043 241 CTGTGPSPRSNHVAALYDDKNLLIFGGSSKSKTLNDLYSLDFETMIWTRIKIRGFHPSPRAGCCGVLCGTKWYIAGGGSR 320 (717)
Q Consensus 241 ~~g~~P~~R~~~aa~~~~~~~lyV~GG~~~~~~~ndv~~yd~~t~~W~~v~~~g~~P~~R~~~sav~~~~~IyV~GG~~~ 320 (717)
..-.-|+.+- ..+++ -.|+|-.++ +.+.+||..+..-..+.. +.++.....+.-+|+..+++...
T Consensus 358 ---~~~~VrY~r~--~~~~e-~~vigt~dg----D~l~iyd~~~~e~kr~e~----~lg~I~av~vs~dGK~~vvaNdr- 422 (668)
T COG4946 358 ---KKGGVRYRRI--QVDPE-GDVIGTNDG----DKLGIYDKDGGEVKRIEK----DLGNIEAVKVSPDGKKVVVANDR- 422 (668)
T ss_pred ---CCCceEEEEE--ccCCc-ceEEeccCC----ceEEEEecCCceEEEeeC----CccceEEEEEcCCCcEEEEEcCc-
Confidence 1112233332 22334 466665544 358899999888777653 44555554455577777776432
Q ss_pred CCccCeEEEEECCCCcEEEeecCCCCCCCCCcceEEEEEEeCCCcEEEEEcCCCCCCCCeEEEEEccCCc
Q 005043 321 KKRHAETLIFDILKGEWSVAITSPSSSVTSNKGFTLVLVQHKEKDFLVAFGGIKKEPSNQVEVLSIEKNE 390 (717)
Q Consensus 321 ~~~~~dv~~yD~~t~~W~~l~~~p~~~~~~r~g~s~v~v~~~~~~~I~v~GG~~~~~~n~v~vyd~~~~e 390 (717)
-++|++|+++..-+.+.. .+.+.-.-..-++ +...++++=-.+.....+.+||+...+
T Consensus 423 ----~el~vididngnv~~idk-------S~~~lItdf~~~~-nsr~iAYafP~gy~tq~Iklydm~~~K 480 (668)
T COG4946 423 ----FELWVIDIDNGNVRLIDK-------SEYGLITDFDWHP-NSRWIAYAFPEGYYTQSIKLYDMDGGK 480 (668)
T ss_pred ----eEEEEEEecCCCeeEecc-------cccceeEEEEEcC-CceeEEEecCcceeeeeEEEEecCCCe
Confidence 469999999998877642 2222111111111 222333332234446678888887765
No 132
>KOG0977 consensus Nuclear envelope protein lamin, intermediate filament superfamily [Cell cycle control, cell division, chromosome partitioning; Nuclear structure]
Probab=88.91 E-value=1 Score=51.52 Aligned_cols=135 Identities=26% Similarity=0.235 Sum_probs=68.0
Q ss_pred CchHHHHHHHHHHHHHHHhcchhHHHHHHHhhHHHHHhhhhhHHhhHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhcc
Q 005043 564 PSSIYQFYESKMAALIRKNGILEGQLAAALVNREAAEKNFSSVLKSRQEMEKKLADSLKEMELLKEKLAGLELAQEEANS 643 (717)
Q Consensus 564 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 643 (717)
++.|--.||.+++.+-+- |+.+.+++..+|.++.-+=..-.++++|+..+.++...-+||+-..+-+=-+.+.
T Consensus 83 ts~ik~~ye~El~~ar~~-------l~e~~~~ra~~e~ei~kl~~e~~elr~~~~~~~k~~~~~re~~~~~~~~l~~leA 155 (546)
T KOG0977|consen 83 TSGIKAKYEAELATARKL-------LDETARERAKLEIEITKLREELKELRKKLEKAEKERRGAREKLDDYLSRLSELEA 155 (546)
T ss_pred CcchhHHhhhhHHHHHHH-------HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhhhHHHHHHHhhhhhhhhh
Confidence 366777888877764331 2333333444444333333333334444444433333333333322221112222
Q ss_pred cccccccCCccchhhHHHHHHHHHHHHHHhhhhccchhhccccceeeEEEeehhhhhhhhhc
Q 005043 644 LSNIVHSDNVRLEHDVAFLKAVLDDTQKELHSTRGVLAGERARAFQLQVEVFHLKQRLQSLE 705 (717)
Q Consensus 644 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 705 (717)
--|++-.+.--||-|+.=||+=.+-...+|+..|..|.-|...---+|-.|-.|+++|.-|.
T Consensus 156 e~~~~krr~~~le~e~~~Lk~en~rl~~~l~~~r~~ld~Etllr~d~~n~~q~Lleel~f~~ 217 (546)
T KOG0977|consen 156 EINTLKRRIKALEDELKRLKAENSRLREELARARKQLDDETLLRVDLQNRVQTLLEELAFLK 217 (546)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 22333344444556666666666666777777777776676655555666666666665543
No 133
>PTZ00420 coronin; Provisional
Probab=88.91 E-value=55 Score=38.48 Aligned_cols=153 Identities=13% Similarity=0.090 Sum_probs=72.5
Q ss_pred CEEEEEeccCCCCCCceEEEEEECCCCcEE-EeeecCCCCCCceeeEEEE-ECCEEEEEccccCCCCCcCcEEEEEcCCC
Q 005043 157 KKVLLVGGKTDSGSDRVSVWTFDTETECWS-VVEAKGDIPVARSGHTVVR-ASSVLILFGGEDGKRRKLNDLHMFDLKSL 234 (717)
Q Consensus 157 ~~Iyv~GG~~~~~~~~~~v~~yD~~t~~W~-~l~~~g~~P~~R~~hs~~~-~~~~Lyv~GG~~~~~~~~~~v~~yD~~t~ 234 (717)
..+++.||.+ ..+.+||+.+..=. .+. .+. .-.++.. .++.+++.|+.+ ..+.+||+.+.
T Consensus 138 ~~iLaSgS~D------gtIrIWDl~tg~~~~~i~----~~~--~V~SlswspdG~lLat~s~D------~~IrIwD~Rsg 199 (568)
T PTZ00420 138 YYIMCSSGFD------SFVNIWDIENEKRAFQIN----MPK--KLSSLKWNIKGNLLSGTCVG------KHMHIIDPRKQ 199 (568)
T ss_pred CeEEEEEeCC------CeEEEEECCCCcEEEEEe----cCC--cEEEEEECCCCCEEEEEecC------CEEEEEECCCC
Confidence 3456667653 25788898876511 111 111 1223333 356777776543 34889999875
Q ss_pred ceEe-ccCCCCCCCCCcccEEEE----ECCcEEEEEcCCCCCCCCCeEEEEECCC-CcEEEeecCCCCCCCCcceEEEEE
Q 005043 235 TWLP-LHCTGTGPSPRSNHVAAL----YDDKNLLIFGGSSKSKTLNDLYSLDFET-MIWTRIKIRGFHPSPRAGCCGVLC 308 (717)
Q Consensus 235 ~W~~-l~~~g~~P~~R~~~aa~~----~~~~~lyV~GG~~~~~~~ndv~~yd~~t-~~W~~v~~~g~~P~~R~~~sav~~ 308 (717)
.-.. +. + ....+....... -+++ .++.+|.+.. ....+..||+.+ ..-...... .. ..+.-+..+
T Consensus 200 ~~i~tl~--g-H~g~~~s~~v~~~~fs~d~~-~IlTtG~d~~-~~R~VkLWDlr~~~~pl~~~~l---d~-~~~~L~p~~ 270 (568)
T PTZ00420 200 EIASSFH--I-HDGGKNTKNIWIDGLGGDDN-YILSTGFSKN-NMREMKLWDLKNTTSALVTMSI---DN-ASAPLIPHY 270 (568)
T ss_pred cEEEEEe--c-ccCCceeEEEEeeeEcCCCC-EEEEEEcCCC-CccEEEEEECCCCCCceEEEEe---cC-CccceEEee
Confidence 4221 11 1 001111111111 1334 5566665432 234689999864 221111110 00 011111111
Q ss_pred ---CCEEEEEecCCCCCccCeEEEEECCCCcEEEee
Q 005043 309 ---GTKWYIAGGGSRKKRHAETLIFDILKGEWSVAI 341 (717)
Q Consensus 309 ---~~~IyV~GG~~~~~~~~dv~~yD~~t~~W~~l~ 341 (717)
.+.+|+.|..++ .+.+|++....-..+.
T Consensus 271 D~~tg~l~lsGkGD~-----tIr~~e~~~~~~~~l~ 301 (568)
T PTZ00420 271 DESTGLIYLIGKGDG-----NCRYYQHSLGSIRKVN 301 (568)
T ss_pred eCCCCCEEEEEECCC-----eEEEEEccCCcEEeec
Confidence 478888886554 4888888776544443
No 134
>KOG0933 consensus Structural maintenance of chromosome protein 2 (chromosome condensation complex Condensin, subunit E) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=88.74 E-value=1.6 Score=52.60 Aligned_cols=79 Identities=41% Similarity=0.380 Sum_probs=53.1
Q ss_pred HHHHHH----hhhhhhhhhhcccccccccCCc---cch--------------hhHHHHHHHHHHHHHHhhhhccchhhcc
Q 005043 626 LLKEKL----AGLELAQEEANSLSNIVHSDNV---RLE--------------HDVAFLKAVLDDTQKELHSTRGVLAGER 684 (717)
Q Consensus 626 ~l~~~~----~~~~~~~~~~~~~~~~~~~~~~---~~~--------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 684 (717)
.|||.. +.+|.+|++-++|++...+.+- .|| .+..-.+-=++-++|||--+-+-++.--
T Consensus 361 ~~ke~~~~~s~~~e~~e~~~eslt~G~Ss~~~~e~~l~~ql~~aK~~~~~~~t~~k~a~~k~e~~~~elk~~e~e~~t~~ 440 (1174)
T KOG0933|consen 361 KLKEAFQEDSKLLEKAEELVESLTAGLSSNEDEEKTLEDQLRDAKITLSEASTEIKQAKLKLEHLRKELKLREGELATAS 440 (1174)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcccccCccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHhhhhh
Confidence 355543 3467778888999999988776 222 2333444456667777776666666544
Q ss_pred ccc-------eeeEEEeehhhhhhhhh
Q 005043 685 ARA-------FQLQVEVFHLKQRLQSL 704 (717)
Q Consensus 685 ~~~-------~~~~~~~~~~~~~~~~~ 704 (717)
+|+ =++|.||-+|+.+||++
T Consensus 441 ~~~~~~~~~ld~~q~eve~l~~~l~~l 467 (1174)
T KOG0933|consen 441 AEYVKDIEELDALQNEVEKLKKRLQSL 467 (1174)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 443 35778999999999987
No 135
>smart00284 OLF Olfactomedin-like domains.
Probab=88.62 E-value=34 Score=35.80 Aligned_cols=192 Identities=15% Similarity=0.046 Sum_probs=98.4
Q ss_pred CCEEEEEeccCCCCCCceEEEEEEC----CCCcEEEeeecCCCCCCceeeEEEEECCEEEEEccccCCCCCcCcEEEEEc
Q 005043 156 GKKVLLVGGKTDSGSDRVSVWTFDT----ETECWSVVEAKGDIPVARSGHTVVRASSVLILFGGEDGKRRKLNDLHMFDL 231 (717)
Q Consensus 156 ~~~Iyv~GG~~~~~~~~~~v~~yD~----~t~~W~~l~~~g~~P~~R~~hs~~~~~~~Lyv~GG~~~~~~~~~~v~~yD~ 231 (717)
++++|++.|.. ...+.++.|.. ....+...- .+|.+-.+.+.++++|.+|.--. ....|.+||+
T Consensus 34 ~~~~wv~~~~~---~~~~~v~ey~~~~~f~~~~~~~~~---~Lp~~~~GtG~VVYngslYY~~~------~s~~iiKydL 101 (255)
T smart00284 34 KSLYWYMPLNT---RVLRSVREYSSMSDFQMGKNPTDH---PLPHAGQGTGVVVYNGSLYFNKF------NSHDICRFDL 101 (255)
T ss_pred CceEEEEcccc---CCCcEEEEecCHHHHhccCCceEE---ECCCccccccEEEECceEEEEec------CCccEEEEEC
Confidence 46788886653 12335777743 234443322 36777888889999999998632 2467999999
Q ss_pred CCCceEeccCCCCCCCCCc---------c---cEEEEECCcEEEEEcCCCCCCCCCeEEEEECCCCcEEEeecCCCCCCC
Q 005043 232 KSLTWLPLHCTGTGPSPRS---------N---HVAALYDDKNLLIFGGSSKSKTLNDLYSLDFETMIWTRIKIRGFHPSP 299 (717)
Q Consensus 232 ~t~~W~~l~~~g~~P~~R~---------~---~aa~~~~~~~lyV~GG~~~~~~~ndv~~yd~~t~~W~~v~~~g~~P~~ 299 (717)
.+.+-.... .+|.+.+ + .-.++-.++ |+|+=......-.=-|-++|+.+..-...-.. ..|.+
T Consensus 102 ~t~~v~~~~---~Lp~a~y~~~~~Y~~~~~sdiDlAvDE~G-LWvIYat~~~~g~ivvSkLnp~tL~ve~tW~T-~~~k~ 176 (255)
T smart00284 102 TTETYQKEP---LLNGAGYNNRFPYAWGGFSDIDLAVDENG-LWVIYATEQNAGKIVISKLNPATLTIENTWIT-TYNKR 176 (255)
T ss_pred CCCcEEEEE---ecCccccccccccccCCCccEEEEEcCCc-eEEEEeccCCCCCEEEEeeCcccceEEEEEEc-CCCcc
Confidence 998754332 2332211 1 122333344 55442221111111244667766443332222 12333
Q ss_pred CcceEEEEECCEEEEEecCCCCCccCeEEEEECCCCcEEEeecCCCCCCCCCcceEEEEEEeCCCcEEEEE
Q 005043 300 RAGCCGVLCGTKWYIAGGGSRKKRHAETLIFDILKGEWSVAITSPSSSVTSNKGFTLVLVQHKEKDFLVAF 370 (717)
Q Consensus 300 R~~~sav~~~~~IyV~GG~~~~~~~~dv~~yD~~t~~W~~l~~~p~~~~~~r~g~s~v~v~~~~~~~I~v~ 370 (717)
..+ .++.+=|.||++-.... ....-.+.||..+.+=..+. .|. ..+.++...+-.++.+.+||+.
T Consensus 177 sa~-naFmvCGvLY~~~s~~~-~~~~I~yayDt~t~~~~~~~-i~f---~n~y~~~s~l~YNP~d~~LY~w 241 (255)
T smart00284 177 SAS-NAFMICGILYVTRSLGS-KGEKVFYAYDTNTGKEGHLD-IPF---ENMYEYISMLDYNPNDRKLYAW 241 (255)
T ss_pred ccc-ccEEEeeEEEEEccCCC-CCcEEEEEEECCCCccceee-eee---ccccccceeceeCCCCCeEEEE
Confidence 333 33444568888863211 11122479999886533321 121 2344444444445556677754
No 136
>PRK01742 tolB translocation protein TolB; Provisional
Probab=88.13 E-value=50 Score=37.14 Aligned_cols=163 Identities=9% Similarity=0.016 Sum_probs=78.5
Q ss_pred cEEEEEcCCCceEEccccccCCCCCCCCCCCcccceEEEEECCEEEEEeccCCCCCCceEEEEEECCCCcEEEeeecCCC
Q 005043 115 DVQVLNFDRFSWTAASSKLYLSPSSLPLKIPACRGHSLISWGKKVLLVGGKTDSGSDRVSVWTFDTETECWSVVEAKGDI 194 (717)
Q Consensus 115 ~v~~yd~~t~~W~~l~~~~~~~~~~~~~~~p~r~~hs~v~~~~~Iyv~GG~~~~~~~~~~v~~yD~~t~~W~~l~~~g~~ 194 (717)
.++++|+.+..-..+... +.........-+++.++++....+ ..++|.+|+.+.....+...
T Consensus 229 ~i~i~dl~tg~~~~l~~~------------~g~~~~~~wSPDG~~La~~~~~~g---~~~Iy~~d~~~~~~~~lt~~--- 290 (429)
T PRK01742 229 QLVVHDLRSGARKVVASF------------RGHNGAPAFSPDGSRLAFASSKDG---VLNIYVMGANGGTPSQLTSG--- 290 (429)
T ss_pred EEEEEeCCCCceEEEecC------------CCccCceeECCCCCEEEEEEecCC---cEEEEEEECCCCCeEeeccC---
Confidence 578888877665554431 111111112224443344332111 23699999988887766521
Q ss_pred CCCceeeEEEEECCE-EEEEccccCCCCCcCcEEEEEcCCCceEeccCCCCCCCCCcccEEEEECCcEEEEEcCCCCCCC
Q 005043 195 PVARSGHTVVRASSV-LILFGGEDGKRRKLNDLHMFDLKSLTWLPLHCTGTGPSPRSNHVAALYDDKNLLIFGGSSKSKT 273 (717)
Q Consensus 195 P~~R~~hs~~~~~~~-Lyv~GG~~~~~~~~~~v~~yD~~t~~W~~l~~~g~~P~~R~~~aa~~~~~~~lyV~GG~~~~~~ 273 (717)
.. ........-+++ |+......+ ...+|.+|..+..-..+.. ..+ .....-+++.|++.++
T Consensus 291 ~~-~~~~~~wSpDG~~i~f~s~~~g----~~~I~~~~~~~~~~~~l~~------~~~-~~~~SpDG~~ia~~~~------ 352 (429)
T PRK01742 291 AG-NNTEPSWSPDGQSILFTSDRSG----SPQVYRMSASGGGASLVGG------RGY-SAQISADGKTLVMING------ 352 (429)
T ss_pred CC-CcCCEEECCCCCEEEEEECCCC----CceEEEEECCCCCeEEecC------CCC-CccCCCCCCEEEEEcC------
Confidence 11 111111222444 444432222 2467888876554333321 011 1222235554555443
Q ss_pred CCeEEEEECCCCcEEEeecCCCCCCCCcceEEEEECCEEEEEecCC
Q 005043 274 LNDLYSLDFETMIWTRIKIRGFHPSPRAGCCGVLCGTKWYIAGGGS 319 (717)
Q Consensus 274 ~ndv~~yd~~t~~W~~v~~~g~~P~~R~~~sav~~~~~IyV~GG~~ 319 (717)
+.++.+|+.++.+..+... . ........-+++.+++++..
T Consensus 353 -~~i~~~Dl~~g~~~~lt~~---~--~~~~~~~sPdG~~i~~~s~~ 392 (429)
T PRK01742 353 -DNVVKQDLTSGSTEVLSST---F--LDESPSISPNGIMIIYSSTQ 392 (429)
T ss_pred -CCEEEEECCCCCeEEecCC---C--CCCCceECCCCCEEEEEEcC
Confidence 3588899999998876432 1 11111223367777776643
No 137
>PF13851 GAS: Growth-arrest specific micro-tubule binding
Probab=87.77 E-value=3.7 Score=41.47 Aligned_cols=110 Identities=25% Similarity=0.318 Sum_probs=81.0
Q ss_pred HHHHHHHHHHHHHhcchhHHHHHHHhhHHHHHhhhhhHHhhHH----------HHHHHHHHHHHHHHHHHHHHhhhhhhh
Q 005043 569 QFYESKMAALIRKNGILEGQLAAALVNREAAEKNFSSVLKSRQ----------EMEKKLADSLKEMELLKEKLAGLELAQ 638 (717)
Q Consensus 569 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~----------~~~~~~~~~~~~~~~l~~~~~~~~~~~ 638 (717)
...+..++++..+|-.|..=|..|....+++++.|...-+.++ .++++|.+...|.|.|+.++..++...
T Consensus 44 ~~~~k~m~ei~~eN~~L~epL~~a~~e~~eL~k~L~~y~kdK~~L~~~k~rl~~~ek~l~~Lk~e~evL~qr~~kle~Er 123 (201)
T PF13851_consen 44 ERNEKLMAEISQENKRLSEPLKKAEEEVEELRKQLKNYEKDKQSLQNLKARLKELEKELKDLKWEHEVLEQRFEKLEQER 123 (201)
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3556667778888888888888888888888887665544444 456677777777888888888888766
Q ss_pred hhhcc-cccccc-------cCCccchhhHHHHHHHHHHHHHHhhhhcc
Q 005043 639 EEANS-LSNIVH-------SDNVRLEHDVAFLKAVLDDTQKELHSTRG 678 (717)
Q Consensus 639 ~~~~~-~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 678 (717)
++.-. .-..|| --|+-||.-|+-|.+.|+..+.+|++.-.
T Consensus 124 deL~~kf~~~i~evqQk~~~kn~lLEkKl~~l~~~lE~keaqL~evl~ 171 (201)
T PF13851_consen 124 DELYRKFESAIQEVQQKTGLKNLLLEKKLQALSEQLEKKEAQLNEVLA 171 (201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 54432 222222 24788999999999999999999997643
No 138
>PLN02919 haloacid dehalogenase-like hydrolase family protein
Probab=87.56 E-value=93 Score=39.55 Aligned_cols=212 Identities=13% Similarity=0.073 Sum_probs=107.6
Q ss_pred CCEEEEEcccCCCCCcccEEEEEcCCCceEEccccccCCC---CCCCCC-CCcccceEEEEE--CCEEEEEeccCCCCCC
Q 005043 98 GNKMIVVGGESGNGLLDDVQVLNFDRFSWTAASSKLYLSP---SSLPLK-IPACRGHSLISW--GKKVLLVGGKTDSGSD 171 (717)
Q Consensus 98 ~~~lyV~GG~~~~~~~~~v~~yd~~t~~W~~l~~~~~~~~---~~~~~~-~p~r~~hs~v~~--~~~Iyv~GG~~~~~~~ 171 (717)
++.|||.-..+ +.+.++|+.++.=+.+........ +..... ..-..-+.+++. ++.+||....
T Consensus 635 gn~LYVaDt~n-----~~Ir~id~~~~~V~tlag~G~~g~~~~gg~~~~~~~ln~P~gVa~dp~~g~LyVad~~------ 703 (1057)
T PLN02919 635 KNLLYVADTEN-----HALREIDFVNETVRTLAGNGTKGSDYQGGKKGTSQVLNSPWDVCFEPVNEKVYIAMAG------ 703 (1057)
T ss_pred CCEEEEEeCCC-----ceEEEEecCCCEEEEEeccCcccCCCCCChhhhHhhcCCCeEEEEecCCCeEEEEECC------
Confidence 45688865432 357888888776555543211000 000000 000111334443 5788987542
Q ss_pred ceEEEEEECCCCcEEEeeecCCC-------C---CCceeeEEEEE--CCEEEEEccccCCCCCcCcEEEEEcCCCceEec
Q 005043 172 RVSVWTFDTETECWSVVEAKGDI-------P---VARSGHTVVRA--SSVLILFGGEDGKRRKLNDLHMFDLKSLTWLPL 239 (717)
Q Consensus 172 ~~~v~~yD~~t~~W~~l~~~g~~-------P---~~R~~hs~~~~--~~~Lyv~GG~~~~~~~~~~v~~yD~~t~~W~~l 239 (717)
.+.+++||+.++....+...+.. + ....-+.+++. ++.|||.... .+.+.+||+.++....+
T Consensus 704 ~~~I~v~d~~~g~v~~~~G~G~~~~~~g~~~~~~~~~~P~GIavspdG~~LYVADs~------n~~Irv~D~~tg~~~~~ 777 (1057)
T PLN02919 704 QHQIWEYNISDGVTRVFSGDGYERNLNGSSGTSTSFAQPSGISLSPDLKELYIADSE------SSSIRALDLKTGGSRLL 777 (1057)
T ss_pred CCeEEEEECCCCeEEEEecCCccccCCCCccccccccCccEEEEeCCCCEEEEEECC------CCeEEEEECCCCcEEEE
Confidence 23699999988766554322210 0 01112233333 3468987532 36799999987654322
Q ss_pred cCC-----------CCC----CCCCc-c-cEEEEECCcEEEEEcCCCCCCCCCeEEEEECCCCcEEEeecCCCCC-----
Q 005043 240 HCT-----------GTG----PSPRS-N-HVAALYDDKNLLIFGGSSKSKTLNDLYSLDFETMIWTRIKIRGFHP----- 297 (717)
Q Consensus 240 ~~~-----------g~~----P~~R~-~-~aa~~~~~~~lyV~GG~~~~~~~ndv~~yd~~t~~W~~v~~~g~~P----- 297 (717)
... |.. ..... . .++++..+..+||....+ +.|.+||+.++....+...|..-
T Consensus 778 ~gg~~~~~~~l~~fG~~dG~g~~~~l~~P~Gvavd~dG~LYVADs~N-----~rIrviD~~tg~v~tiaG~G~~G~~dG~ 852 (1057)
T PLN02919 778 AGGDPTFSDNLFKFGDHDGVGSEVLLQHPLGVLCAKDGQIYVADSYN-----HKIKKLDPATKRVTTLAGTGKAGFKDGK 852 (1057)
T ss_pred EecccccCcccccccCCCCchhhhhccCCceeeEeCCCcEEEEECCC-----CEEEEEECCCCeEEEEeccCCcCCCCCc
Confidence 100 000 00000 0 123333333488876543 46999999998887776443210
Q ss_pred --CC--CcceEEEE-ECCEEEEEecCCCCCccCeEEEEECCCCc
Q 005043 298 --SP--RAGCCGVL-CGTKWYIAGGGSRKKRHAETLIFDILKGE 336 (717)
Q Consensus 298 --~~--R~~~sav~-~~~~IyV~GG~~~~~~~~dv~~yD~~t~~ 336 (717)
.. ..-+++++ -++++||....+ +.|.++|+.+.+
T Consensus 853 ~~~a~l~~P~GIavd~dG~lyVaDt~N-----n~Irvid~~~~~ 891 (1057)
T PLN02919 853 ALKAQLSEPAGLALGENGRLFVADTNN-----SLIRYLDLNKGE 891 (1057)
T ss_pred ccccccCCceEEEEeCCCCEEEEECCC-----CEEEEEECCCCc
Confidence 00 11123333 267899987644 358899988765
No 139
>TIGR03074 PQQ_membr_DH membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Members of this family have several predicted transmembrane helices in the N-terminal region, and include the quinoprotein glucose dehydrogenase (EC 1.1.5.2) of Escherichia coli and the quinate/shikimate dehydrogenase of Acinetobacter sp. ADP1 (EC 1.1.99.25). Sequences closely related except for the absense of the N-terminal hydrophobic region, scoring in the gray zone between the trusted and noise cutoffs, include PQQ-dependent glycerol (EC 1.1.99.22) and and other polyol (sugar alcohol) dehydrogenases.
Probab=87.46 E-value=78 Score=38.60 Aligned_cols=213 Identities=15% Similarity=0.179 Sum_probs=102.0
Q ss_pred CCEEEEEcCCCCCCCCccccccccccCCCCCCCCCeEEeeecCCCCCCc------ceeEEEEECCEEEEEcccCCCCCcc
Q 005043 41 SECVAPSSNHADDRDCECTIAGPEVSNGTSGNSENWMVLSIAGDKPIPR------FNHAAAVIGNKMIVVGGESGNGLLD 114 (717)
Q Consensus 41 ~~~i~l~GG~~~~~~~~~~~~~~~~~~~~~~~s~~W~~l~~~g~~P~~R------~~haav~~~~~lyV~GG~~~~~~~~ 114 (717)
......+||...+..+..+..+-.-++. .....|.--. ++.+.++ ...+-+++++.||+.... +
T Consensus 135 ~~~W~~yg~~~~~~RySpL~qIn~~NV~--~L~~aWt~~t--Gd~~~~~~~~~~~~e~TPlvvgg~lYv~t~~------~ 204 (764)
T TIGR03074 135 AGDWAAYGRTQAGQRYSPLDQINPDNVG--NLKVAWTYHT--GDLKTPDDPGEATFQATPLKVGDTLYLCTPH------N 204 (764)
T ss_pred CCCccccCCCCcccccCcccccCccccc--CceEEEEEEC--CCccccccccccccccCCEEECCEEEEECCC------C
Confidence 3457788886655544433331111111 2346787533 3333322 233446789999998542 3
Q ss_pred cEEEEEcCCC--ceEEccccccCCCCCCCCCCCcccceEE----------------EEECCEEEEEeccCCCCCCceEEE
Q 005043 115 DVQVLNFDRF--SWTAASSKLYLSPSSLPLKIPACRGHSL----------------ISWGKKVLLVGGKTDSGSDRVSVW 176 (717)
Q Consensus 115 ~v~~yd~~t~--~W~~l~~~~~~~~~~~~~~~p~r~~hs~----------------v~~~~~Iyv~GG~~~~~~~~~~v~ 176 (717)
.++.+|..+. .|+.-+....... .....+.+.+. +..+++||+ |..+ ..++
T Consensus 205 ~V~ALDa~TGk~lW~~d~~~~~~~~----~~~~~cRGvay~~~p~~~~~~~~~~~p~~~~~rV~~-~T~D------g~Li 273 (764)
T TIGR03074 205 KVIALDAATGKEKWKFDPKLKTEAG----RQHQTCRGVSYYDAPAAAAGPAAPAAPADCARRIIL-PTSD------ARLI 273 (764)
T ss_pred eEEEEECCCCcEEEEEcCCCCcccc----cccccccceEEecCCcccccccccccccccCCEEEE-ecCC------CeEE
Confidence 6888888875 6876554211000 00001111111 122345554 2221 2477
Q ss_pred EEECCCCc--EEEee-----e---cCCCCCC--ceeeEEEEECCEEEEEccccCCC----CCcCcEEEEEcCCCc--eEe
Q 005043 177 TFDTETEC--WSVVE-----A---KGDIPVA--RSGHTVVRASSVLILFGGEDGKR----RKLNDLHMFDLKSLT--WLP 238 (717)
Q Consensus 177 ~yD~~t~~--W~~l~-----~---~g~~P~~--R~~hs~~~~~~~Lyv~GG~~~~~----~~~~~v~~yD~~t~~--W~~ 238 (717)
.+|..|++ |..-. - .+..+.. ....+-++.++.||+ |+...++ .....+..||..|++ |..
T Consensus 274 ALDA~TGk~~W~fg~~G~vdl~~~~g~~~~g~~~~ts~P~V~~g~VIv-G~~v~d~~~~~~~~G~I~A~Da~TGkl~W~~ 352 (764)
T TIGR03074 274 ALDADTGKLCEDFGNNGTVDLTAGMGTTPPGYYYPTSPPLVAGTTVVI-GGRVADNYSTDEPSGVIRAFDVNTGALVWAW 352 (764)
T ss_pred EEECCCCCEEEEecCCCceeeecccCcCCCcccccccCCEEECCEEEE-EecccccccccCCCcEEEEEECCCCcEeeEE
Confidence 77777654 54211 0 0111211 122334556777666 5542221 234679999999885 765
Q ss_pred ccCCCCCCCCCcccEEEEECCcEEEEEcCCCCCCCCCeEEEEECCCCcE
Q 005043 239 LHCTGTGPSPRSNHVAALYDDKNLLIFGGSSKSKTLNDLYSLDFETMIW 287 (717)
Q Consensus 239 l~~~g~~P~~R~~~aa~~~~~~~lyV~GG~~~~~~~ndv~~yd~~t~~W 287 (717)
-.. -|... .....+. .|..||-+.- ....||++++.-
T Consensus 353 ~~g---~p~~~----~~~~~g~-~~~~gg~n~W----~~~s~D~~~glv 389 (764)
T TIGR03074 353 DPG---NPDPT----APPAPGE-TYTRNTPNSW----SVASYDEKLGLV 389 (764)
T ss_pred ecC---CCCcc----cCCCCCC-EeccCCCCcc----CceEEcCCCCeE
Confidence 421 11110 1112445 6665554321 256788877664
No 140
>PRK11281 hypothetical protein; Provisional
Probab=87.42 E-value=1.3 Score=55.54 Aligned_cols=108 Identities=25% Similarity=0.259 Sum_probs=75.2
Q ss_pred HHHHHHHHHHHhcchhHHHHHHHhhHHHHHhhhhhHHh-------------hHHHHHHHHHHHHHHHHHHHHHHhhh---
Q 005043 571 YESKMAALIRKNGILEGQLAAALVNREAAEKNFSSVLK-------------SRQEMEKKLADSLKEMELLKEKLAGL--- 634 (717)
Q Consensus 571 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~-------------~~~~~~~~~~~~~~~~~~l~~~~~~~--- 634 (717)
+-.++.....+...|+.++++|-+..++|.++|...-+ |-.++|.+|++...+.+...+.++++
T Consensus 71 ~L~qi~~~~~~~~~L~k~l~~Ap~~l~~a~~~Le~Lk~~~~~~~~~~~~~~Sl~qLEq~L~q~~~~Lq~~Q~~La~~Nsq 150 (1113)
T PRK11281 71 LLDKIDRQKEETEQLKQQLAQAPAKLRQAQAELEALKDDNDEETRETLSTLSLRQLESRLAQTLDQLQNAQNDLAEYNSQ 150 (1113)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhhccccccccccccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33456667777778888888877777777776653222 22459999999999999999988888
Q ss_pred --------hhhhhh----------h-cccccccccC-------CccchhhHHHHHHHHHHHHHHhhhhcc
Q 005043 635 --------ELAQEE----------A-NSLSNIVHSD-------NVRLEHDVAFLKAVLDDTQKELHSTRG 678 (717)
Q Consensus 635 --------~~~~~~----------~-~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~ 678 (717)
|+||.. . +-|.|..-++ ...|+.|++.|+|-.+-.|+||.+.--
T Consensus 151 Li~~qT~PERAQ~~lsea~~RlqeI~~~L~~~~~~~~~l~~~~~~~l~ae~~~l~~~~~~~~~~l~~~~~ 220 (1113)
T PRK11281 151 LVSLQTQPERAQAALYANSQRLQQIRNLLKGGKVGGKALRPSQRVLLQAEQALLNAQNDLQRKSLEGNTQ 220 (1113)
T ss_pred HHhhhcchHHHHHHHHHHHHHHHHHHHHHhCCCCCCCcCCHHHHHHHHHHHHHHHHHHHHHHHHHhcchH
Confidence 555522 2 2244433222 455689999999999999999976443
No 141
>PLN00033 photosystem II stability/assembly factor; Provisional
Probab=87.08 E-value=57 Score=36.57 Aligned_cols=249 Identities=12% Similarity=0.044 Sum_probs=121.2
Q ss_pred CCCCeEEeeecCCCCCCcceeEEEEE---CCEEEEEcccCCCCCcccEEEEEcCCCceEEccccccCCCCCCCCCCCc-c
Q 005043 72 NSENWMVLSIAGDKPIPRFNHAAAVI---GNKMIVVGGESGNGLLDDVQVLNFDRFSWTAASSKLYLSPSSLPLKIPA-C 147 (717)
Q Consensus 72 ~s~~W~~l~~~g~~P~~R~~haav~~---~~~lyV~GG~~~~~~~~~v~~yd~~t~~W~~l~~~~~~~~~~~~~~~p~-r 147 (717)
....|+++.. +.........+.+. .+.-|++|-.. .+..=+=...+|........ ..... .
T Consensus 73 ~G~~W~q~~~--p~~~~~~L~~V~F~~~d~~~GwAVG~~G------~IL~T~DGG~tW~~~~~~~~-------~~~~~~~ 137 (398)
T PLN00033 73 QSSEWEQVDL--PIDPGVVLLDIAFVPDDPTHGFLLGTRQ------TLLETKDGGKTWVPRSIPSA-------EDEDFNY 137 (398)
T ss_pred CCCccEEeec--CCCCCCceEEEEeccCCCCEEEEEcCCC------EEEEEcCCCCCceECccCcc-------ccccccc
Confidence 4568999862 11222344555552 35788888632 22222223458998642100 01111 1
Q ss_pred cceEEEEECCEEEEEeccCCCCCCceEEEEEECCCCcEEEeeecCCCCCCceeeEEEEE-CCEEEEEccccCCCCCcCcE
Q 005043 148 RGHSLISWGKKVLLVGGKTDSGSDRVSVWTFDTETECWSVVEAKGDIPVARSGHTVVRA-SSVLILFGGEDGKRRKLNDL 226 (717)
Q Consensus 148 ~~hs~v~~~~~Iyv~GG~~~~~~~~~~v~~yD~~t~~W~~l~~~g~~P~~R~~hs~~~~-~~~Lyv~GG~~~~~~~~~~v 226 (717)
...++...++..|++|-.. -++.-+-...+|+.++....+|... +....+ ++.++++|.. ..+
T Consensus 138 ~l~~v~f~~~~g~~vG~~G-------~il~T~DgG~tW~~~~~~~~~p~~~--~~i~~~~~~~~~ivg~~-------G~v 201 (398)
T PLN00033 138 RFNSISFKGKEGWIIGKPA-------ILLHTSDGGETWERIPLSPKLPGEP--VLIKATGPKSAEMVTDE-------GAI 201 (398)
T ss_pred ceeeeEEECCEEEEEcCce-------EEEEEcCCCCCceECccccCCCCCc--eEEEEECCCceEEEecc-------ceE
Confidence 2344555577888885431 3444444567899886432334332 233334 3567777632 235
Q ss_pred EEEEcCCCceEeccCCC-CCCC--------------CCcccEEEEECCcEEEEEcCCCCCCCCCeEEEEECCCC-cEEEe
Q 005043 227 HMFDLKSLTWLPLHCTG-TGPS--------------PRSNHVAALYDDKNLLIFGGSSKSKTLNDLYSLDFETM-IWTRI 290 (717)
Q Consensus 227 ~~yD~~t~~W~~l~~~g-~~P~--------------~R~~~aa~~~~~~~lyV~GG~~~~~~~ndv~~yd~~t~-~W~~v 290 (717)
++-+-...+|+.+.... ..|. .-....+....+..++++|-.+ .+++-+.... .|+.+
T Consensus 202 ~~S~D~G~tW~~~~~~t~~~~l~~~~~s~~~g~~~y~Gsf~~v~~~~dG~~~~vg~~G------~~~~s~d~G~~~W~~~ 275 (398)
T PLN00033 202 YVTSNAGRNWKAAVEETVSATLNRTVSSGISGASYYTGTFSTVNRSPDGDYVAVSSRG------NFYLTWEPGQPYWQPH 275 (398)
T ss_pred EEECCCCCCceEcccccccccccccccccccccceeccceeeEEEcCCCCEEEEECCc------cEEEecCCCCcceEEe
Confidence 55555567899762100 0011 1111222333333356665433 2444333333 49988
Q ss_pred ecCCCCCCCCcceEEEE-ECCEEEEEecCCCCCccCeEEEEECCCCcE-----EEeecCCCCCCCCCcceEEEEEEeCCC
Q 005043 291 KIRGFHPSPRAGCCGVL-CGTKWYIAGGGSRKKRHAETLIFDILKGEW-----SVAITSPSSSVTSNKGFTLVLVQHKEK 364 (717)
Q Consensus 291 ~~~g~~P~~R~~~sav~-~~~~IyV~GG~~~~~~~~dv~~yD~~t~~W-----~~l~~~p~~~~~~r~g~s~v~v~~~~~ 364 (717)
.. |.++...++.. .++.++++|... .++.-+.....| ..+. .+..+.+...+.. .++
T Consensus 276 ~~----~~~~~l~~v~~~~dg~l~l~g~~G------~l~~S~d~G~~~~~~~f~~~~-----~~~~~~~l~~v~~--~~d 338 (398)
T PLN00033 276 NR----ASARRIQNMGWRADGGLWLLTRGG------GLYVSKGTGLTEEDFDFEEAD-----IKSRGFGILDVGY--RSK 338 (398)
T ss_pred cC----CCccceeeeeEcCCCCEEEEeCCc------eEEEecCCCCcccccceeecc-----cCCCCcceEEEEE--cCC
Confidence 65 33444444433 478888887532 344444444444 4432 1112223333333 246
Q ss_pred cEEEEEcCCC
Q 005043 365 DFLVAFGGIK 374 (717)
Q Consensus 365 ~~I~v~GG~~ 374 (717)
+.+++.|..+
T Consensus 339 ~~~~a~G~~G 348 (398)
T PLN00033 339 KEAWAAGGSG 348 (398)
T ss_pred CcEEEEECCC
Confidence 7788888763
No 142
>KOG4673 consensus Transcription factor TMF, TATA element modulatory factor [Transcription]
Probab=87.03 E-value=1.2 Score=51.15 Aligned_cols=17 Identities=41% Similarity=0.536 Sum_probs=14.8
Q ss_pred EEeehhhhhhhhhcccC
Q 005043 692 VEVFHLKQRLQSLENRA 708 (717)
Q Consensus 692 ~~~~~~~~~~~~~~~~~ 708 (717)
=|+-.|-+|||.-|+|+
T Consensus 612 ~Ei~~LqrRlqaaE~R~ 628 (961)
T KOG4673|consen 612 GEIEDLQRRLQAAERRC 628 (961)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 37889999999999986
No 143
>PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit. CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A ....
Probab=86.67 E-value=47 Score=35.65 Aligned_cols=139 Identities=18% Similarity=0.210 Sum_probs=78.5
Q ss_pred CEEEEEeccCCCCC---Cc-eEEEEEECCCC-----cEEEeeecCCCCCCceeeEEEEECCEEEEEccccCCCCCcCcEE
Q 005043 157 KKVLLVGGKTDSGS---DR-VSVWTFDTETE-----CWSVVEAKGDIPVARSGHTVVRASSVLILFGGEDGKRRKLNDLH 227 (717)
Q Consensus 157 ~~Iyv~GG~~~~~~---~~-~~v~~yD~~t~-----~W~~l~~~g~~P~~R~~hs~~~~~~~Lyv~GG~~~~~~~~~~v~ 227 (717)
...+++|.....+. .. ..+..|+.... ++..+.. ....-.-.+++.++++|++.-| +.++
T Consensus 42 ~~~ivVGT~~~~~~~~~~~~Gri~v~~i~~~~~~~~~l~~i~~---~~~~g~V~ai~~~~~~lv~~~g--------~~l~ 110 (321)
T PF03178_consen 42 KEYIVVGTAFNYGEDPEPSSGRILVFEISESPENNFKLKLIHS---TEVKGPVTAICSFNGRLVVAVG--------NKLY 110 (321)
T ss_dssp SEEEEEEEEE--TTSSS-S-EEEEEEEECSS-----EEEEEEE---EEESS-EEEEEEETTEEEEEET--------TEEE
T ss_pred cCEEEEEecccccccccccCcEEEEEEEEcccccceEEEEEEE---EeecCcceEhhhhCCEEEEeec--------CEEE
Confidence 46677775432221 22 67999998885 5665542 2222335567777888666644 5688
Q ss_pred EEEcCCCc-eEeccCCCCCCCCCcccEEEEECCcEEEEEcCCCCCCCCCeEEEEECCCCcEEEeecCCCCCCCCcceEEE
Q 005043 228 MFDLKSLT-WLPLHCTGTGPSPRSNHVAALYDDKNLLIFGGSSKSKTLNDLYSLDFETMIWTRIKIRGFHPSPRAGCCGV 306 (717)
Q Consensus 228 ~yD~~t~~-W~~l~~~g~~P~~R~~~aa~~~~~~~lyV~GG~~~~~~~ndv~~yd~~t~~W~~v~~~g~~P~~R~~~sav 306 (717)
+|++.... |.... ....+-...++.++++. +++|-.-.+ -.++.|+.+..+-..+... +.++...++.
T Consensus 111 v~~l~~~~~l~~~~---~~~~~~~i~sl~~~~~~--I~vgD~~~s---v~~~~~~~~~~~l~~va~d---~~~~~v~~~~ 179 (321)
T PF03178_consen 111 VYDLDNSKTLLKKA---FYDSPFYITSLSVFKNY--ILVGDAMKS---VSLLRYDEENNKLILVARD---YQPRWVTAAE 179 (321)
T ss_dssp EEEEETTSSEEEEE---EE-BSSSEEEEEEETTE--EEEEESSSS---EEEEEEETTTE-EEEEEEE---SS-BEEEEEE
T ss_pred EEEccCcccchhhh---eecceEEEEEEeccccE--EEEEEcccC---EEEEEEEccCCEEEEEEec---CCCccEEEEE
Confidence 88888887 77775 44444445555556553 445543221 1255667766667777654 4567766666
Q ss_pred EE-CCEEEEEec
Q 005043 307 LC-GTKWYIAGG 317 (717)
Q Consensus 307 ~~-~~~IyV~GG 317 (717)
.+ ++..++++-
T Consensus 180 ~l~d~~~~i~~D 191 (321)
T PF03178_consen 180 FLVDEDTIIVGD 191 (321)
T ss_dssp EE-SSSEEEEEE
T ss_pred EecCCcEEEEEc
Confidence 66 655444443
No 144
>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A ....
Probab=86.54 E-value=51 Score=36.49 Aligned_cols=252 Identities=17% Similarity=0.163 Sum_probs=118.3
Q ss_pred eEEEEE---CCEEEEEcccCCCCCcccEEEEEcCCCceE-EccccccCCCCCCCCCCCcccceEEE-EECCEEEEEeccC
Q 005043 92 HAAAVI---GNKMIVVGGESGNGLLDDVQVLNFDRFSWT-AASSKLYLSPSSLPLKIPACRGHSLI-SWGKKVLLVGGKT 166 (717)
Q Consensus 92 haav~~---~~~lyV~GG~~~~~~~~~v~~yd~~t~~W~-~l~~~~~~~~~~~~~~~p~r~~hs~v-~~~~~Iyv~GG~~ 166 (717)
|+...+ +.++|+.+. + ..+.++|+.+.+=. .+.. .....+++ ..+++.++.+.+.
T Consensus 39 h~~~~~s~Dgr~~yv~~r-d-----g~vsviD~~~~~~v~~i~~--------------G~~~~~i~~s~DG~~~~v~n~~ 98 (369)
T PF02239_consen 39 HAGLKFSPDGRYLYVANR-D-----GTVSVIDLATGKVVATIKV--------------GGNPRGIAVSPDGKYVYVANYE 98 (369)
T ss_dssp EEEEE-TT-SSEEEEEET-T-----SEEEEEETTSSSEEEEEE---------------SSEEEEEEE--TTTEEEEEEEE
T ss_pred eeEEEecCCCCEEEEEcC-C-----CeEEEEECCcccEEEEEec--------------CCCcceEEEcCCCCEEEEEecC
Confidence 554433 467999863 2 26899999987632 2222 11122222 3344444444432
Q ss_pred CCCCCceEEEEEECCCCcEE-EeeecCCC----CCCceeeEEEEECCEEEEEccccCCCCCcCcEEEEEcCCCceEeccC
Q 005043 167 DSGSDRVSVWTFDTETECWS-VVEAKGDI----PVARSGHTVVRASSVLILFGGEDGKRRKLNDLHMFDLKSLTWLPLHC 241 (717)
Q Consensus 167 ~~~~~~~~v~~yD~~t~~W~-~l~~~g~~----P~~R~~hs~~~~~~~Lyv~GG~~~~~~~~~~v~~yD~~t~~W~~l~~ 241 (717)
.+.+.++|..|.+=. .++. +.+ +.+|...-........|++-- .-...+|..|.....=....
T Consensus 99 -----~~~v~v~D~~tle~v~~I~~-~~~~~~~~~~Rv~aIv~s~~~~~fVv~l-----kd~~~I~vVdy~d~~~~~~~- 166 (369)
T PF02239_consen 99 -----PGTVSVIDAETLEPVKTIPT-GGMPVDGPESRVAAIVASPGRPEFVVNL-----KDTGEIWVVDYSDPKNLKVT- 166 (369)
T ss_dssp -----TTEEEEEETTT--EEEEEE---EE-TTTS---EEEEEE-SSSSEEEEEE-----TTTTEEEEEETTTSSCEEEE-
T ss_pred -----CCceeEeccccccceeeccc-ccccccccCCCceeEEecCCCCEEEEEE-----ccCCeEEEEEecccccccee-
Confidence 236889998886533 3332 212 334554333344555566532 12467888887654211111
Q ss_pred CCCCCCCCcccEEEEECCcEEEEEcCCCCCCCCCeEEEEECCCCcEEEeecCCCCCCCCcceEEEEEC-CEEEEEecCCC
Q 005043 242 TGTGPSPRSNHVAALYDDKNLLIFGGSSKSKTLNDLYSLDFETMIWTRIKIRGFHPSPRAGCCGVLCG-TKWYIAGGGSR 320 (717)
Q Consensus 242 ~g~~P~~R~~~aa~~~~~~~lyV~GG~~~~~~~ndv~~yd~~t~~W~~v~~~g~~P~~R~~~sav~~~-~~IyV~GG~~~ 320 (717)
.+..+++-|-+..-.+++.|+.+ ... .+.+-.+|.+++.-..+-..+..|.+..+..+.-.+ +.++-.+|...
T Consensus 167 --~i~~g~~~~D~~~dpdgry~~va-~~~---sn~i~viD~~~~k~v~~i~~g~~p~~~~~~~~php~~g~vw~~~~~~~ 240 (369)
T PF02239_consen 167 --TIKVGRFPHDGGFDPDGRYFLVA-ANG---SNKIAVIDTKTGKLVALIDTGKKPHPGPGANFPHPGFGPVWATSGLGY 240 (369)
T ss_dssp --EEE--TTEEEEEE-TTSSEEEEE-EGG---GTEEEEEETTTTEEEEEEE-SSSBEETTEEEEEETTTEEEEEEEBSSS
T ss_pred --eecccccccccccCcccceeeec-ccc---cceeEEEeeccceEEEEeeccccccccccccccCCCcceEEeeccccc
Confidence 23455666666665554233333 221 357999999888766554445445544444443332 34555555322
Q ss_pred CCccCeEEEEEC----CCCcEEEeecCCCCCCCCCcceEEEEEEeCCCcEEEEEcCCCCCCCCeEEEEEccCCc
Q 005043 321 KKRHAETLIFDI----LKGEWSVAITSPSSSVTSNKGFTLVLVQHKEKDFLVAFGGIKKEPSNQVEVLSIEKNE 390 (717)
Q Consensus 321 ~~~~~dv~~yD~----~t~~W~~l~~~p~~~~~~r~g~s~v~v~~~~~~~I~v~GG~~~~~~n~v~vyd~~~~e 390 (717)
.. -...--|+ ....|+.+...+. ...+ ..+-.+++..++|+-=-.+ ...+.|.++|..+.+
T Consensus 241 ~~--~~~ig~~~v~v~d~~~wkvv~~I~~----~G~g--lFi~thP~s~~vwvd~~~~-~~~~~v~viD~~tl~ 305 (369)
T PF02239_consen 241 FA--IPLIGTDPVSVHDDYAWKVVKTIPT----QGGG--LFIKTHPDSRYVWVDTFLN-PDADTVQVIDKKTLK 305 (369)
T ss_dssp SE--EEEEE--TTT-STTTBTSEEEEEE-----SSSS----EE--TT-SEEEEE-TT--SSHT-EEEEECCGTE
T ss_pred ee--cccccCCccccchhhcCeEEEEEEC----CCCc--ceeecCCCCccEEeeccCC-CCCceEEEEECcCcc
Confidence 10 01122232 3367888775433 2222 3333456677777641111 115689999998875
No 145
>PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT). This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1 (Q61026 from SWISSPROT), and thus enhances transcriptional activation by a number of nuclear receptors. CoCoA has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region [].
Probab=86.53 E-value=4 Score=46.89 Aligned_cols=48 Identities=38% Similarity=0.422 Sum_probs=32.4
Q ss_pred hHHHHHHHHHHHHHHhhhhccchhhccccceeeEE-----Eeehhhhhhhhhcc
Q 005043 658 DVAFLKAVLDDTQKELHSTRGVLAGERARAFQLQV-----EVFHLKQRLQSLEN 706 (717)
Q Consensus 658 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~ 706 (717)
++|=||.=|.|...+|--.|+-.+-||. ++|..+ +|-.|+.+|+.+|.
T Consensus 333 e~aql~~qLad~~l~lke~~~q~~qEk~-~l~~~~e~~k~~ie~L~~el~~~e~ 385 (546)
T PF07888_consen 333 EAAQLKLQLADASLELKEGRSQWAQEKQ-ALQHSAEADKDEIEKLSRELQMLEE 385 (546)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHhHHHHHHHHHHHHHHHH
Confidence 3666676777777777777777777777 555444 34567777777764
No 146
>PLN02919 haloacid dehalogenase-like hydrolase family protein
Probab=86.53 E-value=1e+02 Score=39.09 Aligned_cols=260 Identities=11% Similarity=0.028 Sum_probs=128.7
Q ss_pred CCEEEEEcccCCCCCcccEEEEEcCCCceEEccccccCCCCCCCCCCC-cccceEEEEE--CCEEEEEeccCCCCCCceE
Q 005043 98 GNKMIVVGGESGNGLLDDVQVLNFDRFSWTAASSKLYLSPSSLPLKIP-ACRGHSLISW--GKKVLLVGGKTDSGSDRVS 174 (717)
Q Consensus 98 ~~~lyV~GG~~~~~~~~~v~~yd~~t~~W~~l~~~~~~~~~~~~~~~p-~r~~hs~v~~--~~~Iyv~GG~~~~~~~~~~ 174 (717)
++.|||.-= ..+.+.++|+....=..+...........++... -..-+++++. ++.|||.-..+ +.
T Consensus 579 ~g~lyVaDs-----~n~rI~v~d~~G~~i~~ig~~g~~G~~dG~~~~a~f~~P~GIavd~~gn~LYVaDt~n------~~ 647 (1057)
T PLN02919 579 NNRLFISDS-----NHNRIVVTDLDGNFIVQIGSTGEEGLRDGSFEDATFNRPQGLAYNAKKNLLYVADTEN------HA 647 (1057)
T ss_pred CCeEEEEEC-----CCCeEEEEeCCCCEEEEEccCCCcCCCCCchhccccCCCcEEEEeCCCCEEEEEeCCC------ce
Confidence 577998742 1346889998765333332211100000000000 1112455554 46789874432 35
Q ss_pred EEEEECCCCcEEEeeecCCCC------------CCceeeEEEEE--CCEEEEEccccCCCCCcCcEEEEEcCCCceEecc
Q 005043 175 VWTFDTETECWSVVEAKGDIP------------VARSGHTVVRA--SSVLILFGGEDGKRRKLNDLHMFDLKSLTWLPLH 240 (717)
Q Consensus 175 v~~yD~~t~~W~~l~~~g~~P------------~~R~~hs~~~~--~~~Lyv~GG~~~~~~~~~~v~~yD~~t~~W~~l~ 240 (717)
+.++|+.++.-+.+...|... .-..-+.+++. ++.|||... ..+.+++||+.+.....+.
T Consensus 648 Ir~id~~~~~V~tlag~G~~g~~~~gg~~~~~~~ln~P~gVa~dp~~g~LyVad~------~~~~I~v~d~~~g~v~~~~ 721 (1057)
T PLN02919 648 LREIDFVNETVRTLAGNGTKGSDYQGGKKGTSQVLNSPWDVCFEPVNEKVYIAMA------GQHQIWEYNISDGVTRVFS 721 (1057)
T ss_pred EEEEecCCCEEEEEeccCcccCCCCCChhhhHhhcCCCeEEEEecCCCeEEEEEC------CCCeEEEEECCCCeEEEEe
Confidence 888998887766554322100 00112334443 578888742 2356899998777654432
Q ss_pred CCCC-------CCC---CCcccEEEEE-CCcEEEEEcCCCCCCCCCeEEEEECCCCcEEEeecCC-CCCC----------
Q 005043 241 CTGT-------GPS---PRSNHVAALY-DDKNLLIFGGSSKSKTLNDLYSLDFETMIWTRIKIRG-FHPS---------- 298 (717)
Q Consensus 241 ~~g~-------~P~---~R~~~aa~~~-~~~~lyV~GG~~~~~~~ndv~~yd~~t~~W~~v~~~g-~~P~---------- 298 (717)
..|. .+. ...-..+++. +++.|||....+ +.|.+||+.++..+.+.... ..+.
T Consensus 722 G~G~~~~~~g~~~~~~~~~~P~GIavspdG~~LYVADs~n-----~~Irv~D~~tg~~~~~~gg~~~~~~~l~~fG~~dG 796 (1057)
T PLN02919 722 GDGYERNLNGSSGTSTSFAQPSGISLSPDLKELYIADSES-----SSIRALDLKTGGSRLLAGGDPTFSDNLFKFGDHDG 796 (1057)
T ss_pred cCCccccCCCCccccccccCccEEEEeCCCCEEEEEECCC-----CeEEEEECCCCcEEEEEecccccCcccccccCCCC
Confidence 1110 000 0111123333 344588876543 56999999876644322100 0000
Q ss_pred ------CCcceEEEE-ECCEEEEEecCCCCCccCeEEEEECCCCcEEEeecCCCC------CCCCCc-ceEEEEEEeCCC
Q 005043 299 ------PRAGCCGVL-CGTKWYIAGGGSRKKRHAETLIFDILKGEWSVAITSPSS------SVTSNK-GFTLVLVQHKEK 364 (717)
Q Consensus 299 ------~R~~~sav~-~~~~IyV~GG~~~~~~~~dv~~yD~~t~~W~~l~~~p~~------~~~~r~-g~s~v~v~~~~~ 364 (717)
...-.+++. -++.+||....+ ..|.+||+.+.....+...... ...... .-..+++.. +
T Consensus 797 ~g~~~~l~~P~Gvavd~dG~LYVADs~N-----~rIrviD~~tg~v~tiaG~G~~G~~dG~~~~a~l~~P~GIavd~--d 869 (1057)
T PLN02919 797 VGSEVLLQHPLGVLCAKDGQIYVADSYN-----HKIKKLDPATKRVTTLAGTGKAGFKDGKALKAQLSEPAGLALGE--N 869 (1057)
T ss_pred chhhhhccCCceeeEeCCCcEEEEECCC-----CEEEEEECCCCeEEEEeccCCcCCCCCcccccccCCceEEEEeC--C
Confidence 001113333 257899988654 3599999999887766531110 000111 111223322 4
Q ss_pred cEEEEEcCCCCCCCCeEEEEEccCCc
Q 005043 365 DFLVAFGGIKKEPSNQVEVLSIEKNE 390 (717)
Q Consensus 365 ~~I~v~GG~~~~~~n~v~vyd~~~~e 390 (717)
+.+||.-.. .+.|.++|+.+.+
T Consensus 870 G~lyVaDt~----Nn~Irvid~~~~~ 891 (1057)
T PLN02919 870 GRLFVADTN----NSLIRYLDLNKGE 891 (1057)
T ss_pred CCEEEEECC----CCEEEEEECCCCc
Confidence 457776543 3368899988765
No 147
>PF12217 End_beta_propel: Catalytic beta propeller domain of bacteriophage endosialidase; InterPro: IPR024428 This entry represents the beta propeller domain of endosialidases, which consists of catalytically active part of the enzymes. This core domain forms stable SDS-resistant trimers. There is a nested beta barrel domain in this domain. This domain is typically between 443 and 460 amino acids in length [].; PDB: 1V0E_B 1V0F_E 3JU4_A 3GVL_A 3GVK_B 3GVJ_A.
Probab=85.78 E-value=49 Score=34.56 Aligned_cols=269 Identities=18% Similarity=0.210 Sum_probs=116.5
Q ss_pred EEEECCEEEE--Eccc-CCCCCcccEEEEEcCC-CceEEccccccCCCCCCCCCCCcccceEEEEECCEEEEEecc-CCC
Q 005043 94 AAVIGNKMIV--VGGE-SGNGLLDDVQVLNFDR-FSWTAASSKLYLSPSSLPLKIPACRGHSLISWGKKVLLVGGK-TDS 168 (717)
Q Consensus 94 av~~~~~lyV--~GG~-~~~~~~~~v~~yd~~t-~~W~~l~~~~~~~~~~~~~~~p~r~~hs~v~~~~~Iyv~GG~-~~~ 168 (717)
+.++++.||. .+|. .+-..+.-.|+=.-.. ++|+...-+...-|. .|.......++.++++++|.+=-. .-.
T Consensus 21 aFVy~~VIYAPfM~~~RHGv~~LhvaWVkSgDdG~TWttPEwLtd~H~~---yptvnyHCmSMGv~~NRLfa~iEtR~~a 97 (367)
T PF12217_consen 21 AFVYDNVIYAPFMAGDRHGVDNLHVAWVKSGDDGQTWTTPEWLTDLHPD---YPTVNYHCMSMGVVGNRLFAVIETRTVA 97 (367)
T ss_dssp -EEETTEEEEEEEEESSSSSTT-EEEEEEESSTTSS----EESS---TT---TTTEEEE-B-EEEETTEEEEEEEEEETT
T ss_pred ceeecCeeecccccccccCccceEEEEEEecCCCCcccCchhhhhcCCC---CCccceeeeeeeeecceeeEEEeehhhh
Confidence 4566777763 3442 2323344445555544 588764432111111 111122344577889999886332 222
Q ss_pred CCCceEEEEEE---CCCCcEEEeeecCCCCC-------CceeeEEEEECCEEEEEccccCCCCCcCcEEEEEcCCCceEe
Q 005043 169 GSDRVSVWTFD---TETECWSVVEAKGDIPV-------ARSGHTVVRASSVLILFGGEDGKRRKLNDLHMFDLKSLTWLP 238 (717)
Q Consensus 169 ~~~~~~v~~yD---~~t~~W~~l~~~g~~P~-------~R~~hs~~~~~~~Lyv~GG~~~~~~~~~~v~~yD~~t~~W~~ 238 (717)
+......+.|| .....|+..... .+|. .-.-|+.+.+++.-|.+|=.+++- ....+-.+-. ++.|..
T Consensus 98 ~~km~~~~Lw~RpMF~~spW~~teL~-~~~~~~~a~~~vTe~HSFa~i~~~~fA~GyHnGD~-sPRe~G~~yf-s~~~~s 174 (367)
T PF12217_consen 98 SNKMVRAELWSRPMFHDSPWRITELG-TIASFTSAGVAVTELHSFATIDDNQFAVGYHNGDV-SPRELGFLYF-SDAFAS 174 (367)
T ss_dssp T--EEEEEEEEEE-STTS--EEEEEE-S-TT--------SEEEEEEE-SSS-EEEEEEE-SS-SS-EEEEEEE-TTTTT-
T ss_pred hhhhhhhhhhcccccccCCceeeecc-cccccccccceeeeeeeeeEecCCceeEEeccCCC-CcceeeEEEe-cccccC
Confidence 23333455555 467789876532 2333 445678888888888887666542 2233322221 122321
Q ss_pred cc------CCCCCCCCCcccEEEEECCcEEEEE-cCCCCCCCCCeEEEEECCCCcEEEeecCCCCCCCCcceEEEEECCE
Q 005043 239 LH------CTGTGPSPRSNHVAALYDDKNLLIF-GGSSKSKTLNDLYSLDFETMIWTRIKIRGFHPSPRAGCCGVLCGTK 311 (717)
Q Consensus 239 l~------~~g~~P~~R~~~aa~~~~~~~lyV~-GG~~~~~~~ndv~~yd~~t~~W~~v~~~g~~P~~R~~~sav~~~~~ 311 (717)
.. ........-...+.-.+++. ||+. -|......-+.+.+-+.....|..+.... ..-....-.+.+++.
T Consensus 175 p~~~vrr~i~sey~~~AsEPCvkyY~g~-LyLtTRgt~~~~~GS~L~rs~d~G~~w~slrfp~--nvHhtnlPFakvgD~ 251 (367)
T PF12217_consen 175 PGVFVRRIIPSEYERNASEPCVKYYDGV-LYLTTRGTLPTNPGSSLHRSDDNGQNWSSLRFPN--NVHHTNLPFAKVGDV 251 (367)
T ss_dssp TT--EEEE--GGG-TTEEEEEEEEETTE-EEEEEEES-TTS---EEEEESSTTSS-EEEE-TT-----SS---EEEETTE
T ss_pred CcceeeeechhhhccccccchhhhhCCE-EEEEEcCcCCCCCcceeeeecccCCchhhccccc--cccccCCCceeeCCE
Confidence 10 00112222233344567777 6654 44444455567888888888999986521 112222334667999
Q ss_pred EEEEecCCCC---------C----ccCeEEEE-------ECCCCcEEEeec--CCCCCCCCCcceEEEEEEeCCCcEE-E
Q 005043 312 WYIAGGGSRK---------K----RHAETLIF-------DILKGEWSVAIT--SPSSSVTSNKGFTLVLVQHKEKDFL-V 368 (717)
Q Consensus 312 IyV~GG~~~~---------~----~~~dv~~y-------D~~t~~W~~l~~--~p~~~~~~r~g~s~v~v~~~~~~~I-~ 368 (717)
|||||..... . ....++.. .++.-+|..+.. ..+.....-.|.+.+++. ++.| |
T Consensus 252 l~mFgsERA~~EWE~G~~D~RY~~~yPRtF~~k~nv~~W~~d~~ew~nitdqIYqG~ivNSavGVGSv~~K---D~~lyy 328 (367)
T PF12217_consen 252 LYMFGSERAENEWEGGEPDNRYRANYPRTFMLKVNVSDWSLDDVEWVNITDQIYQGGIVNSAVGVGSVVVK---DGWLYY 328 (367)
T ss_dssp EEEEEE-SSTT-SSTT-----SS-B--EEEEEEEETTT---TT---EEEEE-BB--SSS---SEEEEEEEE---TTEEEE
T ss_pred EEEEeccccccccccCCCcccccccCCceEEEEeecccCCccceEEEEeecceeccccccccccceeEEEE---CCEEEE
Confidence 9999953210 0 11222222 444556766653 122233445567777775 5555 4
Q ss_pred EEcCCC
Q 005043 369 AFGGIK 374 (717)
Q Consensus 369 v~GG~~ 374 (717)
+|||.+
T Consensus 329 ~FGgED 334 (367)
T PF12217_consen 329 IFGGED 334 (367)
T ss_dssp EEEEB-
T ss_pred EecCcc
Confidence 899974
No 148
>PF08268 FBA_3: F-box associated domain; InterPro: IPR013187 This domain occurs in a diverse superfamily of genes in plants. Most examples are found C-terminal to an F-box (IPR001810 from INTERPRO), a 60 amino acid motif involved in ubiquitination of target proteins to mark them for degradation. Two-hybid experiments support the idea that most members are interchangeable F-box subunits of SCF E3 complexes []. Some members have two copies of this domain.
Probab=85.70 E-value=8.4 Score=35.59 Aligned_cols=85 Identities=16% Similarity=0.226 Sum_probs=56.2
Q ss_pred EECCEEEEEeccCCCCCCceEEEEEECCCCcEEEeeecCCCCCCceeeEEEEECCEEEEEccccCCCCCcCcEEEE-EcC
Q 005043 154 SWGKKVLLVGGKTDSGSDRVSVWTFDTETECWSVVEAKGDIPVARSGHTVVRASSVLILFGGEDGKRRKLNDLHMF-DLK 232 (717)
Q Consensus 154 ~~~~~Iyv~GG~~~~~~~~~~v~~yD~~t~~W~~l~~~g~~P~~R~~hs~~~~~~~Lyv~GG~~~~~~~~~~v~~y-D~~ 232 (717)
.++|-+|...-. .......+..||..+++|+.+..............++.++|+|-++.-........-++|+. |..
T Consensus 3 cinGvly~~a~~--~~~~~~~IvsFDv~~E~f~~i~~P~~~~~~~~~~~L~~~~G~L~~v~~~~~~~~~~~~iWvLeD~~ 80 (129)
T PF08268_consen 3 CINGVLYWLAWS--EDSDNNVIVSFDVRSEKFRFIKLPEDPYSSDCSSTLIEYKGKLALVSYNDQGEPDSIDIWVLEDYE 80 (129)
T ss_pred EECcEEEeEEEE--CCCCCcEEEEEEcCCceEEEEEeeeeeccccCccEEEEeCCeEEEEEecCCCCcceEEEEEeeccc
Confidence 457778877665 22335579999999999999874211234456667778899888875443321123467877 466
Q ss_pred CCceEecc
Q 005043 233 SLTWLPLH 240 (717)
Q Consensus 233 t~~W~~l~ 240 (717)
...|++..
T Consensus 81 k~~Wsk~~ 88 (129)
T PF08268_consen 81 KQEWSKKH 88 (129)
T ss_pred cceEEEEE
Confidence 77899774
No 149
>PF04880 NUDE_C: NUDE protein, C-terminal conserved region; InterPro: IPR006964 This domain represents the C-terminal conserved region of NUDE proteins. Emericella nidulans (Aspergillus nidulans) NUDE, acts in the cytoplasmic dynein/dynactin pathway and is required for distribution of nuclei []. It is a homologue of the nuclear distribution protein RO11 of Neurospora crassa. NUDE interacts with the NUDF via an N-terminal coiled coil domain; this is the only domain which is absolutely required for NUDE function.; PDB: 2V66_B 2V71_B.
Probab=85.69 E-value=0.82 Score=44.41 Aligned_cols=58 Identities=28% Similarity=0.423 Sum_probs=23.9
Q ss_pred HHHHHHHHHHHHHhcchhHHHHHHHhhHHHHHhhhhhHHhhHHHHHHHHHHHHHHHHHHHHHHhhhhhhh
Q 005043 569 QFYESKMAALIRKNGILEGQLAAALVNREAAEKNFSSVLKSRQEMEKKLADSLKEMELLKEKLAGLELAQ 638 (717)
Q Consensus 569 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 638 (717)
.++|.|+-++|.||..||..| .+||.+ ..+-|-|+..+.|+..|. .++||+...+...
T Consensus 3 eD~EsklN~AIERnalLE~EL----dEKE~L-------~~~~QRLkDE~RDLKqEl-~V~ek~~~~~~~~ 60 (166)
T PF04880_consen 3 EDFESKLNQAIERNALLESEL----DEKENL-------REEVQRLKDELRDLKQEL-IVQEKLRKANRKS 60 (166)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH----HHHHHH-------HHCH----------------------------
T ss_pred HHHHHHHHHHHHHhHHHHHHH----HHHHHH-------HHHHHHHHHHHHHHHHHH-HHHHHhhhhhccc
Confidence 578999999999999999998 344444 334466777777777777 7777776655433
No 150
>PRK11637 AmiB activator; Provisional
Probab=85.65 E-value=3.4 Score=46.67 Aligned_cols=91 Identities=16% Similarity=0.146 Sum_probs=41.7
Q ss_pred HHHHHHHHHhcchhHHHHHHHhhHHHHHhhhhhHHhhHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhcc---cccccc
Q 005043 573 SKMAALIRKNGILEGQLAAALVNREAAEKNFSSVLKSRQEMEKKLADSLKEMELLKEKLAGLELAQEEANS---LSNIVH 649 (717)
Q Consensus 573 ~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~---~~~~~~ 649 (717)
.++..+..+-..|+.||..+.....++++.++.+-+...+++++++...++++.+++.++..-++.-+..+ |.-+..
T Consensus 68 ~~~~~~~~~l~~l~~qi~~~~~~i~~~~~~i~~~~~ei~~l~~eI~~~q~~l~~~~~~l~~rlra~Y~~g~~~~l~vLl~ 147 (428)
T PRK11637 68 QQRASLLAQLKKQEEAISQASRKLRETQNTLNQLNKQIDELNASIAKLEQQQAAQERLLAAQLDAAFRQGEHTGLQLILS 147 (428)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcHHHHHhc
Confidence 33333334444444444444444444444444444444444445555444444444444444444433222 334666
Q ss_pred cCCc-cchhhHHHHH
Q 005043 650 SDNV-RLEHDVAFLK 663 (717)
Q Consensus 650 ~~~~-~~~~~~~~~~ 663 (717)
+++. ++..-+.||.
T Consensus 148 a~~~~~~~r~~~~l~ 162 (428)
T PRK11637 148 GEESQRGERILAYFG 162 (428)
T ss_pred CCChhHHHHHHHHHH
Confidence 6655 3333344444
No 151
>PF04111 APG6: Autophagy protein Apg6; InterPro: IPR007243 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. Apg6/Vps30p has two distinct functions in the autophagic process, either associated with the membrane or in a retrieval step of the carboxypeptidase Y sorting pathway [].; GO: 0006914 autophagy; PDB: 3Q8T_A 3VP7_A 4DDP_A.
Probab=85.29 E-value=2.3 Score=45.90 Aligned_cols=93 Identities=22% Similarity=0.237 Sum_probs=65.0
Q ss_pred hHHHHHHHhhHHHHHhhhhhHHhhHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhcccccccccCCccchhhHHHHHHH
Q 005043 586 EGQLAAALVNREAAEKNFSSVLKSRQEMEKKLADSLKEMELLKEKLAGLELAQEEANSLSNIVHSDNVRLEHDVAFLKAV 665 (717)
Q Consensus 586 ~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 665 (717)
+...++...+.+++|+.....++.-+++|+..+++.+|++.|+++++.++.-+++.-..-|.-+.+-.+++.+..=|++-
T Consensus 42 ~~~~~~~~~el~~le~Ee~~l~~eL~~LE~e~~~l~~el~~le~e~~~l~~eE~~~~~~~n~~~~~l~~~~~e~~sl~~q 121 (314)
T PF04111_consen 42 EEDIEELEEELEKLEQEEEELLQELEELEKEREELDQELEELEEELEELDEEEEEYWREYNELQLELIEFQEERDSLKNQ 121 (314)
T ss_dssp HH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44455555666666666666677777777777777788888887777777666666666666666666777777888888
Q ss_pred HHHHHHHhhhhcc
Q 005043 666 LDDTQKELHSTRG 678 (717)
Q Consensus 666 ~~~~~~~~~~~~~ 678 (717)
++-++.+|..-|.
T Consensus 122 ~~~~~~~L~~L~k 134 (314)
T PF04111_consen 122 YEYASNQLDRLRK 134 (314)
T ss_dssp HHHHHHHHHCHHT
T ss_pred HHHHHHHHHHHHh
Confidence 8888888876654
No 152
>PF08826 DMPK_coil: DMPK coiled coil domain like; InterPro: IPR014930 This domain is found in the myotonic dystrophy protein kinase (DMPK) and adopts a coiled coil structure. It plays a role in dimerisation []. ; GO: 0004674 protein serine/threonine kinase activity, 0005524 ATP binding, 0006468 protein phosphorylation; PDB: 1WT6_D.
Probab=84.83 E-value=5.4 Score=32.17 Aligned_cols=54 Identities=26% Similarity=0.324 Sum_probs=34.7
Q ss_pred HHHHHHHhcchhHHHHHHHhhHHHHHhhhhhHHhhHHHHHHHHHHHHHHHHHHH
Q 005043 575 MAALIRKNGILEGQLAAALVNREAAEKNFSSVLKSRQEMEKKLADSLKEMELLK 628 (717)
Q Consensus 575 ~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 628 (717)
+.+.||-.-.+..+|..+-+.--++|++|..+-+-.++++.++....++||.|+
T Consensus 6 L~~EirakQ~~~eEL~kvk~~n~~~e~kLqeaE~rn~eL~~ei~~L~~e~ee~r 59 (61)
T PF08826_consen 6 LEAEIRAKQAIQEELTKVKSANLAFESKLQEAEKRNRELEQEIERLKKEMEELR 59 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 345566666677777776666667777776666666666666666666666554
No 153
>smart00787 Spc7 Spc7 kinetochore protein. This domain is found in cell division proteins which are required for kinetochore-spindle association.
Probab=84.70 E-value=3.7 Score=44.31 Aligned_cols=18 Identities=28% Similarity=0.351 Sum_probs=14.5
Q ss_pred EEeehhhhhhhhhcccCC
Q 005043 692 VEVFHLKQRLQSLENRAP 709 (717)
Q Consensus 692 ~~~~~~~~~~~~~~~~~~ 709 (717)
-||..||.+++.||..++
T Consensus 271 ~Ei~~Lk~~~~~Le~l~g 288 (312)
T smart00787 271 KEIEKLKEQLKLLQSLTG 288 (312)
T ss_pred HHHHHHHHHHHHHHHHhC
Confidence 488889999988887655
No 154
>KOG0649 consensus WD40 repeat protein [General function prediction only]
Probab=84.13 E-value=56 Score=33.86 Aligned_cols=159 Identities=19% Similarity=0.201 Sum_probs=85.7
Q ss_pred CceEEccccccCCCCCCCCCCCcccceEEEEECCEEEEEeccCCCCCCceEEEEEECCCCcEEEeeecCCCCCCceeeEE
Q 005043 124 FSWTAASSKLYLSPSSLPLKIPACRGHSLISWGKKVLLVGGKTDSGSDRVSVWTFDTETECWSVVEAKGDIPVARSGHTV 203 (717)
Q Consensus 124 ~~W~~l~~~~~~~~~~~~~~~p~r~~hs~v~~~~~Iyv~GG~~~~~~~~~~v~~yD~~t~~W~~l~~~g~~P~~R~~hs~ 203 (717)
..|+...|+.... .+.|......+..-.|.|+..||-. .++..|+++++.+..- ....-+-|++
T Consensus 99 ~lwe~~~P~~~~~-----~evPeINam~ldP~enSi~~AgGD~-------~~y~~dlE~G~i~r~~----rGHtDYvH~v 162 (325)
T KOG0649|consen 99 RLWEVKIPMQVDA-----VEVPEINAMWLDPSENSILFAGGDG-------VIYQVDLEDGRIQREY----RGHTDYVHSV 162 (325)
T ss_pred hhhhhcCccccCc-----ccCCccceeEeccCCCcEEEecCCe-------EEEEEEecCCEEEEEE----cCCcceeeee
Confidence 4688777753311 2233333233333468899998742 5899999999987654 2344566777
Q ss_pred EEEC-CEEEEEccccCCCCCcCcEEEEEcCCCceEec-cCC--CCCCCCCccc--EEEEECCcEEEEEcCCCCCCCCCeE
Q 005043 204 VRAS-SVLILFGGEDGKRRKLNDLHMFDLKSLTWLPL-HCT--GTGPSPRSNH--VAALYDDKNLLIFGGSSKSKTLNDL 277 (717)
Q Consensus 204 ~~~~-~~Lyv~GG~~~~~~~~~~v~~yD~~t~~W~~l-~~~--g~~P~~R~~~--aa~~~~~~~lyV~GG~~~~~~~ndv 277 (717)
+.-+ +.=++-||.++. +-++|.++.+-..+ .+. .....|-.+- .+...+.. .+|+||-.. +
T Consensus 163 v~R~~~~qilsG~EDGt------vRvWd~kt~k~v~~ie~yk~~~~lRp~~g~wigala~~ed-WlvCGgGp~------l 229 (325)
T KOG0649|consen 163 VGRNANGQILSGAEDGT------VRVWDTKTQKHVSMIEPYKNPNLLRPDWGKWIGALAVNED-WLVCGGGPK------L 229 (325)
T ss_pred eecccCcceeecCCCcc------EEEEeccccceeEEeccccChhhcCcccCceeEEEeccCc-eEEecCCCc------e
Confidence 6633 344556665543 56778887765443 111 1122222222 44445555 678887532 4
Q ss_pred EEEECCCCcEEEeecCCCCCCCCcceEEEEECCEEEEEe
Q 005043 278 YSLDFETMIWTRIKIRGFHPSPRAGCCGVLCGTKWYIAG 316 (717)
Q Consensus 278 ~~yd~~t~~W~~v~~~g~~P~~R~~~sav~~~~~IyV~G 316 (717)
-.|++...+=+.+- |.|-..+-+..+++.+++.|
T Consensus 230 slwhLrsse~t~vf-----pipa~v~~v~F~~d~vl~~G 263 (325)
T KOG0649|consen 230 SLWHLRSSESTCVF-----PIPARVHLVDFVDDCVLIGG 263 (325)
T ss_pred eEEeccCCCceEEE-----ecccceeEeeeecceEEEec
Confidence 45566555544443 33333333334455555555
No 155
>PF05266 DUF724: Protein of unknown function (DUF724); InterPro: IPR007930 This family contains several uncharacterised proteins found exclusively in Arabidopsis thaliana.
Probab=83.99 E-value=6.6 Score=39.26 Aligned_cols=85 Identities=20% Similarity=0.276 Sum_probs=64.8
Q ss_pred hhHHHHHHHhhHHHHHhhhhhHHhhHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhcccccccccCCccchhhHHHHHH
Q 005043 585 LEGQLAAALVNREAAEKNFSSVLKSRQEMEKKLADSLKEMELLKEKLAGLELAQEEANSLSNIVHSDNVRLEHDVAFLKA 664 (717)
Q Consensus 585 ~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 664 (717)
+.......+..++.+|+.+...--..+++|.+++++.+.+..|+++.+.+....|+.. ++..||+-++.=|+.
T Consensus 101 lk~~~~~~~e~~k~le~~~~~~~~~~~~~e~~i~~Le~ki~el~~~~~~~~~~ke~~~-------~ei~~lks~~~~l~~ 173 (190)
T PF05266_consen 101 LKDDQEKLLEERKKLEKKIEEKEAELKELESEIKELEMKILELQRQAAKLKEKKEAKD-------KEISRLKSEAEALKE 173 (190)
T ss_pred HHHhHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHH
Confidence 4455566677777778777777667788888888888888888888777776555554 677788888888888
Q ss_pred HHHHHHHHhhhh
Q 005043 665 VLDDTQKELHST 676 (717)
Q Consensus 665 ~~~~~~~~~~~~ 676 (717)
=+++..-+-++|
T Consensus 174 ~~~~~e~~F~~~ 185 (190)
T PF05266_consen 174 EIENAELEFQSV 185 (190)
T ss_pred HHHHHHHHHHHH
Confidence 888887777765
No 156
>PF10186 Atg14: UV radiation resistance protein and autophagy-related subunit 14; InterPro: IPR018791 Class III phosphatidylinositol 3-kinase (PI3-kinase) regulates multiple membrane trafficking. In yeast, two distinct PI3-kinase complexes are known: complex I (Vps34, Vps15, Vps30/Atg6, and Atg14) is involved in autophagy, and complex II (Vps34, Vps15, Vps30/Atg6, and Vps38) functions in the vacuolar protein sorting pathway. In mammals, the counterparts of Vps34, Vps15, and Vps30/Atg6 are Vps34, p150, and Beclin 1, respectively. Mammalian UV irradiation resistance-associated gene (UVRAG) has been identified as identical to yeast Vps38 []. The Atg14 (autophagy-related protein 14) proteins are hydrophilic proteins and have a coiled-coil motif at the N terminus region. Yeast cells with mutant Atg14 are defective not only in autophagy but also in sorting of carboxypeptidase Y (CPY), a vacuolar-soluble hydrolase, to the vacuole []. This entry represents Atg14 and UVRAG, which bind Beclin 1 to forms two distinct PI3-kinase complexes. This entry also includes Bakor (beclin-1-associated autophagy-related key regulator), also known as autophagy-related protein 14-like protein, which share sequence similarity to the yeast Atg14 protein []. Barkor positively regulates autophagy through its interaction with Beclin-1, with decreased levels of autophagosome formation observed when Barkor expression is eliminated []. Autophagy mediates the cellular response to nutrient deprivation, protein aggregation, and pathogen invasion in humans, and malfunction of autophagy has been implicated in multiple human diseases including cancer. ; GO: 0010508 positive regulation of autophagy
Probab=83.96 E-value=1.4 Score=46.80 Aligned_cols=98 Identities=16% Similarity=0.213 Sum_probs=70.2
Q ss_pred hhHHHHHhhhhhHHhhHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhcccccccccCCccchhhHHHHHHHHHHHHHHh
Q 005043 594 VNREAAEKNFSSVLKSRQEMEKKLADSLKEMELLKEKLAGLELAQEEANSLSNIVHSDNVRLEHDVAFLKAVLDDTQKEL 673 (717)
Q Consensus 594 ~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 673 (717)
...++.+.++..+-+..+++.+.+.+..++++.+|++++.....=+....+....+.....+.+++.-++..+..++++|
T Consensus 63 ~~~~~~~~r~~~l~~~i~~~~~~i~~~r~~l~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~l 142 (302)
T PF10186_consen 63 REIEELRERLERLRERIERLRKRIEQKRERLEELRESLEQRRSRLSASQDLVESRQEQLEELQNELEERKQRLSQLQSQL 142 (302)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555556667676777777777777777777777777765543332223333334444556788999999999999999
Q ss_pred hhhccchhhccccceeeE
Q 005043 674 HSTRGVLAGERARAFQLQ 691 (717)
Q Consensus 674 ~~~~~~~~~~~~~~~~~~ 691 (717)
...|..|.-|=+.-|-++
T Consensus 143 ~~~r~~l~~~l~~ifpI~ 160 (302)
T PF10186_consen 143 ARRRRQLIQELSEIFPIE 160 (302)
T ss_pred HHHHHHHHHHHHHHhCce
Confidence 999999999999999885
No 157
>PF12329 TMF_DNA_bd: TATA element modulatory factor 1 DNA binding; InterPro: IPR022092 This is the middle region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes that contains at its N-terminal section a number of leucine zippers that could potentially form coiled coil structures. The whole proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant [] cells.
Probab=83.95 E-value=6 Score=33.21 Aligned_cols=64 Identities=23% Similarity=0.279 Sum_probs=44.5
Q ss_pred HHHHHHHHHHhcchhHHHHHHHhhHHHHHhhhhhHHhhHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 005043 572 ESKMAALIRKNGILEGQLAAALVNREAAEKNFSSVLKSRQEMEKKLADSLKEMELLKEKLAGLE 635 (717)
Q Consensus 572 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 635 (717)
...|++|+...+.|+.+-..-...--.+-+.....-+....+.++++....+++.|++++.++|
T Consensus 11 De~Ia~L~eEGekLSk~el~~~~~IKKLr~~~~e~e~~~~~l~~~~~~~e~~~~~l~~~l~~~E 74 (74)
T PF12329_consen 11 DEQIAQLMEEGEKLSKKELKLNNTIKKLRAKIKELEKQIKELKKKLEELEKELESLEERLKRAE 74 (74)
T ss_pred HHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccC
Confidence 3568888888888866554444444444444555557777788888888888888888887654
No 158
>TIGR02169 SMC_prok_A chromosome segregation protein SMC, primarily archaeal type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent.
Probab=83.77 E-value=2 Score=54.66 Aligned_cols=13 Identities=8% Similarity=0.054 Sum_probs=5.0
Q ss_pred HHHHHHHHHHHhh
Q 005043 662 LKAVLDDTQKELH 674 (717)
Q Consensus 662 ~~~~~~~~~~~~~ 674 (717)
++.-++.+++++.
T Consensus 446 ~~~~l~~l~~~~~ 458 (1164)
T TIGR02169 446 KALEIKKQEWKLE 458 (1164)
T ss_pred HHHHHHHHHHHHH
Confidence 3333333343333
No 159
>COG1196 Smc Chromosome segregation ATPases [Cell division and chromosome partitioning]
Probab=83.68 E-value=3.1 Score=53.09 Aligned_cols=49 Identities=22% Similarity=0.323 Sum_probs=21.0
Q ss_pred hhHHHHHHHhhHHHHHhhhhhHHhhHHHHHHHHHHHHHHHHHHHHHHhh
Q 005043 585 LEGQLAAALVNREAAEKNFSSVLKSRQEMEKKLADSLKEMELLKEKLAG 633 (717)
Q Consensus 585 ~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 633 (717)
++.+++.+...+..+++.+.+.-..++.+..++++..++...+++++.+
T Consensus 388 ~~~~~~~~~~~l~~l~~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 436 (1163)
T COG1196 388 LEAELAEIRNELEELKREIESLEERLERLSERLEDLKEELKELEAELEE 436 (1163)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3333333333444444444444444444444444444444444444443
No 160
>KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=83.67 E-value=94 Score=37.04 Aligned_cols=67 Identities=22% Similarity=0.286 Sum_probs=39.4
Q ss_pred EEEEECCEEEEEeccCCCCCCceEEEEEECCCCcEEEeeecCCCCCCceeeEEEEECC-EEEEEccccCCCCCcCcEEEE
Q 005043 151 SLISWGKKVLLVGGKTDSGSDRVSVWTFDTETECWSVVEAKGDIPVARSGHTVVRASS-VLILFGGEDGKRRKLNDLHMF 229 (717)
Q Consensus 151 s~v~~~~~Iyv~GG~~~~~~~~~~v~~yD~~t~~W~~l~~~g~~P~~R~~hs~~~~~~-~Lyv~GG~~~~~~~~~~v~~y 229 (717)
++++-++++.++-|.++ ++-++|..|.+-... ++.. +-+++..+.+ +.+|.|+.+ ..+.+|
T Consensus 378 sl~vS~d~~~~~Sga~~------SikiWn~~t~kciRT-----i~~~-y~l~~~Fvpgd~~Iv~G~k~------Gel~vf 439 (888)
T KOG0306|consen 378 SLCVSSDSILLASGAGE------SIKIWNRDTLKCIRT-----ITCG-YILASKFVPGDRYIVLGTKN------GELQVF 439 (888)
T ss_pred EEEeecCceeeeecCCC------cEEEEEccCcceeEE-----eccc-cEEEEEecCCCceEEEeccC------CceEEE
Confidence 45555677766655432 577777776554332 2333 6667777655 555555433 348889
Q ss_pred EcCCCc
Q 005043 230 DLKSLT 235 (717)
Q Consensus 230 D~~t~~ 235 (717)
|+.+..
T Consensus 440 dlaS~~ 445 (888)
T KOG0306|consen 440 DLASAS 445 (888)
T ss_pred Eeehhh
Confidence 986543
No 161
>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain. This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.
Probab=83.57 E-value=76 Score=34.96 Aligned_cols=260 Identities=10% Similarity=0.057 Sum_probs=125.5
Q ss_pred CEEEEEcccCCCCCcccEEEEEcCCCceEEccccccCCCCCCCCCCCcccceEEEEECCEEEEEeccCC---CCCCceEE
Q 005043 99 NKMIVVGGESGNGLLDDVQVLNFDRFSWTAASSKLYLSPSSLPLKIPACRGHSLISWGKKVLLVGGKTD---SGSDRVSV 175 (717)
Q Consensus 99 ~~lyV~GG~~~~~~~~~v~~yd~~t~~W~~l~~~~~~~~~~~~~~~p~r~~hs~v~~~~~Iyv~GG~~~---~~~~~~~v 175 (717)
..+||.-....... +.+.++|..+.+-...-+ ...+-.+.+...+..||+.-.+.. .+...+.|
T Consensus 13 ~~v~V~d~~~~~~~-~~v~ViD~~~~~v~g~i~------------~G~~P~~~~spDg~~lyva~~~~~R~~~G~~~d~V 79 (352)
T TIGR02658 13 RRVYVLDPGHFAAT-TQVYTIDGEAGRVLGMTD------------GGFLPNPVVASDGSFFAHASTVYSRIARGKRTDYV 79 (352)
T ss_pred CEEEEECCcccccC-ceEEEEECCCCEEEEEEE------------ccCCCceeECCCCCEEEEEeccccccccCCCCCEE
Confidence 34777755332222 789999988865433222 111111223333677999876432 33456789
Q ss_pred EEEECCCCcEEE-eeecCCCCCCce-------eeEEEEECCEEEEEccccCCCCCcCcEEEEEcCCCceEe-ccCCC---
Q 005043 176 WTFDTETECWSV-VEAKGDIPVARS-------GHTVVRASSVLILFGGEDGKRRKLNDLHMFDLKSLTWLP-LHCTG--- 243 (717)
Q Consensus 176 ~~yD~~t~~W~~-l~~~g~~P~~R~-------~hs~~~~~~~Lyv~GG~~~~~~~~~~v~~yD~~t~~W~~-l~~~g--- 243 (717)
.+||+.|.+-.. ++. .+.||+ ..++...+..|||.- -..-+.+-++|+.+++-.. ++..+
T Consensus 80 ~v~D~~t~~~~~~i~~---p~~p~~~~~~~~~~~~ls~dgk~l~V~n-----~~p~~~V~VvD~~~~kvv~ei~vp~~~~ 151 (352)
T TIGR02658 80 EVIDPQTHLPIADIEL---PEGPRFLVGTYPWMTSLTPDNKTLLFYQ-----FSPSPAVGVVDLEGKAFVRMMDVPDCYH 151 (352)
T ss_pred EEEECccCcEEeEEcc---CCCchhhccCccceEEECCCCCEEEEec-----CCCCCEEEEEECCCCcEEEEEeCCCCcE
Confidence 999999987543 331 122231 122222344677761 1224678888888776543 22100
Q ss_pred CCCCCCcccEEEEECCcEEE---------------EEcC------CCC------C-----CCCCeEEEEECCC------C
Q 005043 244 TGPSPRSNHVAALYDDKNLL---------------IFGG------SSK------S-----KTLNDLYSLDFET------M 285 (717)
Q Consensus 244 ~~P~~R~~~aa~~~~~~~ly---------------V~GG------~~~------~-----~~~ndv~~yd~~t------~ 285 (717)
-.|.+...+.+.+.++..+. +|-+ ... + .+-+.|+..|+.. .
T Consensus 152 vy~t~e~~~~~~~~Dg~~~~v~~d~~g~~~~~~~~vf~~~~~~v~~rP~~~~~dg~~~~vs~eG~V~~id~~~~~~~~~~ 231 (352)
T TIGR02658 152 IFPTANDTFFMHCRDGSLAKVGYGTKGNPKIKPTEVFHPEDEYLINHPAYSNKSGRLVWPTYTGKIFQIDLSSGDAKFLP 231 (352)
T ss_pred EEEecCCccEEEeecCceEEEEecCCCceEEeeeeeecCCccccccCCceEcCCCcEEEEecCCeEEEEecCCCcceecc
Confidence 01222222222233333233 2222 000 0 1125566777422 2
Q ss_pred cEEEeecCCC----CCCCCcceEEEEECCEEEEEe-cCC---CCCccCeEEEEECCCCcEEEeecCCCCCCCCCcceEEE
Q 005043 286 IWTRIKIRGF----HPSPRAGCCGVLCGTKWYIAG-GGS---RKKRHAETLIFDILKGEWSVAITSPSSSVTSNKGFTLV 357 (717)
Q Consensus 286 ~W~~v~~~g~----~P~~R~~~sav~~~~~IyV~G-G~~---~~~~~~dv~~yD~~t~~W~~l~~~p~~~~~~r~g~s~v 357 (717)
.|..+..... .|......+....++++||.. |.. .....+.++++|..+.+ .+...+ ..+.-++++
T Consensus 232 ~~~~~~~~~~~~~wrP~g~q~ia~~~dg~~lyV~~~~~~~~thk~~~~~V~ViD~~t~k--vi~~i~----vG~~~~~ia 305 (352)
T TIGR02658 232 AIEAFTEAEKADGWRPGGWQQVAYHRARDRIYLLADQRAKWTHKTASRFLFVVDAKTGK--RLRKIE----LGHEIDSIN 305 (352)
T ss_pred eeeeccccccccccCCCcceeEEEcCCCCEEEEEecCCccccccCCCCEEEEEECCCCe--EEEEEe----CCCceeeEE
Confidence 3555433211 111111112222368999843 221 22344789999987754 333212 233334444
Q ss_pred EEEeCCCcEEEEEcCCCCCCCCeEEEEEccCCc
Q 005043 358 LVQHKEKDFLVAFGGIKKEPSNQVEVLSIEKNE 390 (717)
Q Consensus 358 ~v~~~~~~~I~v~GG~~~~~~n~v~vyd~~~~e 390 (717)
+. ..++..+|+.-+. .++|.++|..+.+
T Consensus 306 vS-~Dgkp~lyvtn~~----s~~VsViD~~t~k 333 (352)
T TIGR02658 306 VS-QDAKPLLYALSTG----DKTLYIFDAETGK 333 (352)
T ss_pred EC-CCCCeEEEEeCCC----CCcEEEEECcCCe
Confidence 33 2233367766553 3479999998886
No 162
>KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=83.42 E-value=34 Score=35.23 Aligned_cols=173 Identities=13% Similarity=0.161 Sum_probs=95.0
Q ss_pred ECCEEEEEccccCCCCCcCcEEEEEcCCCceEeccCCCCCCCCCcccEEEEECCc-EEEEEcCCCCCCCCCeEEEEECCC
Q 005043 206 ASSVLILFGGEDGKRRKLNDLHMFDLKSLTWLPLHCTGTGPSPRSNHVAALYDDK-NLLIFGGSSKSKTLNDLYSLDFET 284 (717)
Q Consensus 206 ~~~~Lyv~GG~~~~~~~~~~v~~yD~~t~~W~~l~~~g~~P~~R~~~aa~~~~~~-~lyV~GG~~~~~~~ndv~~yd~~t 284 (717)
.++.-+..||-+ ..++.||..|++-.+-- .|.. + .--++.+++. .+++-|+++ ..+..||-..
T Consensus 69 ~Dnskf~s~GgD------k~v~vwDV~TGkv~Rr~-rgH~--a--qVNtV~fNeesSVv~SgsfD-----~s~r~wDCRS 132 (307)
T KOG0316|consen 69 SDNSKFASCGGD------KAVQVWDVNTGKVDRRF-RGHL--A--QVNTVRFNEESSVVASGSFD-----SSVRLWDCRS 132 (307)
T ss_pred ccccccccCCCC------ceEEEEEcccCeeeeec-cccc--c--eeeEEEecCcceEEEecccc-----ceeEEEEccc
Confidence 344444554432 34888999887632210 0000 0 1123445544 566666665 3588999888
Q ss_pred CcEEEeecCCCCCCCCcceEEEEECCEEEEEecCCCCCccCeEEEEECCCCcEEEeecCCCCCCCCCcceEEEEEEeCCC
Q 005043 285 MIWTRIKIRGFHPSPRAGCCGVLCGTKWYIAGGGSRKKRHAETLIFDILKGEWSVAITSPSSSVTSNKGFTLVLVQHKEK 364 (717)
Q Consensus 285 ~~W~~v~~~g~~P~~R~~~sav~~~~~IyV~GG~~~~~~~~dv~~yD~~t~~W~~l~~~p~~~~~~r~g~s~v~v~~~~~ 364 (717)
+..+.+... ...+-+...+.+.++.+|.|..++. +..||+...+-.. ...|+....+....+
T Consensus 133 ~s~ePiQil---dea~D~V~Si~v~~heIvaGS~DGt-----vRtydiR~G~l~s----------Dy~g~pit~vs~s~d 194 (307)
T KOG0316|consen 133 RSFEPIQIL---DEAKDGVSSIDVAEHEIVAGSVDGT-----VRTYDIRKGTLSS----------DYFGHPITSVSFSKD 194 (307)
T ss_pred CCCCccchh---hhhcCceeEEEecccEEEeeccCCc-----EEEEEeecceeeh----------hhcCCcceeEEecCC
Confidence 887777654 5677788888889999988876655 7889987665332 223333333433334
Q ss_pred cEEEEEcCCCCCCCCeEEEEEccCCcc--------cCccccccCCCCCcEEEEeeCCCCC
Q 005043 365 DFLVAFGGIKKEPSNQVEVLSIEKNES--------SMGRRSTPNAKGPGQLLFEKRSSST 416 (717)
Q Consensus 365 ~~I~v~GG~~~~~~n~v~vyd~~~~eW--------~~~w~~~~~~~~p~~~~fgG~~~~~ 416 (717)
+...++|-.++ .+-.+|-++.+- +..+..-|.......-+|+|+-+-+
T Consensus 195 ~nc~La~~l~s----tlrLlDk~tGklL~sYkGhkn~eykldc~l~qsdthV~sgSEDG~ 250 (307)
T KOG0316|consen 195 GNCSLASSLDS----TLRLLDKETGKLLKSYKGHKNMEYKLDCCLNQSDTHVFSGSEDGK 250 (307)
T ss_pred CCEEEEeeccc----eeeecccchhHHHHHhcccccceeeeeeeecccceeEEeccCCce
Confidence 55555555432 344455444431 1112222333444455666664433
No 163
>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association [].
Probab=83.30 E-value=2.6 Score=45.84 Aligned_cols=135 Identities=22% Similarity=0.241 Sum_probs=66.8
Q ss_pred HHHHHHHHHHHhcchhHHHHHHHhhHHHHHhhhhhHHhhHHHHHHHHHHHHHHHHHHHHHHhhhhh-hhhhhcccccccc
Q 005043 571 YESKMAALIRKNGILEGQLAAALVNREAAEKNFSSVLKSRQEMEKKLADSLKEMELLKEKLAGLEL-AQEEANSLSNIVH 649 (717)
Q Consensus 571 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-~~~~~~~~~~~~~ 649 (717)
|+=+++.+---...|+..++.-...++.+.+.++.+-+-..++.++.+.+.+|.+.||+..+..+. =|++.+.+.+-+
T Consensus 140 YeWR~~ll~gl~~~L~~~~~~L~~D~~~L~~~~~~l~~~~~~l~~~~~~L~~e~~~Lk~~~~e~~~~D~~eL~~lr~eL- 218 (325)
T PF08317_consen 140 YEWRMQLLEGLKEGLEENLELLQEDYAKLDKQLEQLDELLPKLRERKAELEEELENLKQLVEEIESCDQEELEALRQEL- 218 (325)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcCHHHHHHHHHHH-
Confidence 444444444444455555555555555666666666666666666666666666666665554331 122222222111
Q ss_pred cCCccchhhHHHHHHHHHHHHHHhhhhccchhhccccceeeE------------------EEeehhhhhhhhhcccCC
Q 005043 650 SDNVRLEHDVAFLKAVLDDTQKELHSTRGVLAGERARAFQLQ------------------VEVFHLKQRLQSLENRAP 709 (717)
Q Consensus 650 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------------~~~~~~~~~~~~~~~~~~ 709 (717)
..++.+++=+|+-|++.|+||..-+.-++.=.++--+++ -||..||.++..||+..+
T Consensus 219 ---~~~~~~i~~~k~~l~el~~el~~l~~~i~~~~~~k~~l~~eI~e~~~~~~~~r~~t~~Ev~~Lk~~~~~Le~~~g 293 (325)
T PF08317_consen 219 ---AEQKEEIEAKKKELAELQEELEELEEKIEELEEQKQELLAEIAEAEKIREECRGWTRSEVKRLKAKVDALEKLTG 293 (325)
T ss_pred ---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHC
Confidence 112234444455555555555544444332222111111 267778888887776543
No 164
>PF12718 Tropomyosin_1: Tropomyosin like; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].
Probab=83.23 E-value=13 Score=35.41 Aligned_cols=89 Identities=22% Similarity=0.271 Sum_probs=44.5
Q ss_pred HHHHHHHHHHHHhcchhHHHHHHHhhHHHHHhhhhhH----------HhhHHHHHHHHHHHHHHHHHHHHHHhhhhhhhh
Q 005043 570 FYESKMAALIRKNGILEGQLAAALVNREAAEKNFSSV----------LKSRQEMEKKLADSLKEMELLKEKLAGLELAQE 639 (717)
Q Consensus 570 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~----------~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 639 (717)
-.+..|++|-.|+..||.+|+.+......+..++... .+-.|.||..|..+.+-+....+||..++.+=+
T Consensus 32 ~~E~EI~sL~~K~~~lE~eld~~~~~l~~~k~~lee~~~~~~~~E~l~rriq~LEeele~ae~~L~e~~ekl~e~d~~ae 111 (143)
T PF12718_consen 32 QKEQEITSLQKKNQQLEEELDKLEEQLKEAKEKLEESEKRKSNAEQLNRRIQLLEEELEEAEKKLKETTEKLREADVKAE 111 (143)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Confidence 3455677777777777777666655554444433333 333344444444444444444444443332222
Q ss_pred hhcccccccccCCccchhhHHHHHHHHHHHHHH
Q 005043 640 EANSLSNIVHSDNVRLEHDVAFLKAVLDDTQKE 672 (717)
Q Consensus 640 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 672 (717)
+ +|+-|+.|..=.++..+.
T Consensus 112 ~--------------~eRkv~~le~~~~~~E~k 130 (143)
T PF12718_consen 112 H--------------FERKVKALEQERDQWEEK 130 (143)
T ss_pred H--------------HHHHHHHHHhhHHHHHHH
Confidence 2 355566666555554443
No 165
>KOG0993 consensus Rab5 GTPase effector Rabaptin-5 [Intracellular trafficking, secretion, and vesicular transport]
Probab=83.21 E-value=6.8 Score=42.76 Aligned_cols=70 Identities=26% Similarity=0.258 Sum_probs=57.8
Q ss_pred HHHHHHHHHHHHHHHhcchhHHHHHHHhhHHH--HHhhhhhHHhhHHHHHHHHHHH----HHHHHHHHHHHhhhhh
Q 005043 567 IYQFYESKMAALIRKNGILEGQLAAALVNREA--AEKNFSSVLKSRQEMEKKLADS----LKEMELLKEKLAGLEL 636 (717)
Q Consensus 567 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~e~~~~~~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~~~ 636 (717)
|-+-||-..+++-+.-+.+|..+.++....+. -+-+|.--.+-+++.++||-++ +||++.||.|++.+|.
T Consensus 101 ~~~~leqertq~qq~~e~~erEv~~l~~llsr~~~~~~Lenem~ka~Ed~eKlrelv~pmekeI~elk~kl~~aE~ 176 (542)
T KOG0993|consen 101 MCQNLEQERTQLQQNEEKLEREVKALMELLSRGQYQLDLENEMDKAKEDEEKLRELVTPMEKEINELKKKLAKAEQ 176 (542)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhhhhHHHHHHHHhhHHHHHHHHhhHHHHHHHHHHHHHhHHH
Confidence 44568888888888889999999998876666 6668888889999999999765 6888889999998873
No 166
>KOG1899 consensus LAR transmembrane tyrosine phosphatase-interacting protein liprin [General function prediction only]
Probab=82.67 E-value=5.6 Score=45.61 Aligned_cols=54 Identities=31% Similarity=0.310 Sum_probs=44.5
Q ss_pred hhHHHHHHHhhHHHHHhhhhhHHhhHHHHHHHHHHHHHHHHHHHHHHhhhhhhh
Q 005043 585 LEGQLAAALVNREAAEKNFSSVLKSRQEMEKKLADSLKEMELLKEKLAGLELAQ 638 (717)
Q Consensus 585 ~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 638 (717)
||.=|+.-....-++|.-|+--+-||+.+|-+.-|++.|+..||-|++++|+.|
T Consensus 144 LE~cie~kr~kLnatEEmLQqellsrtsLETqKlDLmaevSeLKLkltalEkeq 197 (861)
T KOG1899|consen 144 LETCIEEKRNKLNATEEMLQQELLSRTSLETQKLDLMAEVSELKLKLTALEKEQ 197 (861)
T ss_pred HHHHHHHHHhhhchHHHHHHHHHHhhhhHHHHHhHHHHHHHHhHHHHHHHHHHh
Confidence 333344444445677888999999999999999999999999999999999887
No 167
>KOG3215 consensus Uncharacterized conserved protein [Function unknown]
Probab=82.67 E-value=12 Score=37.18 Aligned_cols=125 Identities=22% Similarity=0.302 Sum_probs=83.2
Q ss_pred HHHHHHHHHHHHHhcchh------HHHHHH-HhhHHHHHh-----------hhhhH---HhhHHHHHHHHHHHHHHHHHH
Q 005043 569 QFYESKMAALIRKNGILE------GQLAAA-LVNREAAEK-----------NFSSV---LKSRQEMEKKLADSLKEMELL 627 (717)
Q Consensus 569 ~~~~~~~~~~~~~~~~~~------~~~~~~-~~~~~~~e~-----------~~~~~---~~~~~~~~~~~~~~~~~~~~l 627 (717)
+..++++..+...-+.-| ++++-| |+++.+-|= ||-.+ -+-+.++|.+++..-+++|+|
T Consensus 36 ~~l~ksf~~~~~E~~kee~~y~ea~ri~Ka~L~~Lsq~E~~mlKtqrv~e~nlre~e~~~q~k~Eiersi~~a~~kie~l 115 (222)
T KOG3215|consen 36 EHLEKSFVLAKAEIEKEEKEYSEAKRIRKALLASLSQDEPSMLKTQRVIEMNLREIENLVQKKLEIERSIQKARNKIELL 115 (222)
T ss_pred HHHHHHHHHHHHHhhhhhhchhHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444433333 566666 566666553 22222 234567888889999999999
Q ss_pred HHHHhhhhhhh---hhhcccccccccCCccchh--hHHHHHHHHHHHHHHhhhhccchhhccccceeeEEEe
Q 005043 628 KEKLAGLELAQ---EEANSLSNIVHSDNVRLEH--DVAFLKAVLDDTQKELHSTRGVLAGERARAFQLQVEV 694 (717)
Q Consensus 628 ~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 694 (717)
|-.|+.++..+ +|+-.|+|++..---|-|. |+-=||-+|++..-+=-||-..|-+-| .-|++=+-+
T Consensus 116 kkql~eaKi~r~nrqe~~~l~kvis~~p~RsEt~k~l~el~keleel~~~~~s~~~klelrR-kqf~~lm~~ 186 (222)
T KOG3215|consen 116 KKQLHEAKIVRLNRQEYSALSKVISDCPARSETDKDLNELKKELEELDDLNNSTETKLELRR-KQFKYLMVS 186 (222)
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHHHHHHhhhhHHHHHHHh-hcchHHHhh
Confidence 99999988744 8999999999888888884 566788888877776667766665533 445544433
No 168
>PF00261 Tropomyosin: Tropomyosin; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].; PDB: 2EFR_A 2Z5H_C 2Z5I_D 2D3E_B 2EFS_D 3U59_B 1C1G_C 1IHQ_A 3AZD_B 1MV4_B ....
Probab=82.51 E-value=7 Score=40.47 Aligned_cols=105 Identities=32% Similarity=0.312 Sum_probs=54.5
Q ss_pred HHHHHHHHHHhcchhHHHHHHHhhHHHHHh-------hhhhH---HhhHHHHHHHHHHH----HHHHHHHHHHHhhhhhh
Q 005043 572 ESKMAALIRKNGILEGQLAAALVNREAAEK-------NFSSV---LKSRQEMEKKLADS----LKEMELLKEKLAGLELA 637 (717)
Q Consensus 572 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~-------~~~~~---~~~~~~~~~~~~~~----~~~~~~l~~~~~~~~~~ 637 (717)
+.|....-||...+|+.|+.|-.--+.+|. .|..+ +++-+..+.+.... ...+..|+++|..+|.-
T Consensus 112 e~k~~E~~rkl~~~E~~Le~aEeR~e~~E~ki~eLE~el~~~~~~lk~lE~~~~~~~~re~~~e~~i~~L~~~lkeaE~R 191 (237)
T PF00261_consen 112 ERKYEEVERKLKVLEQELERAEERAEAAESKIKELEEELKSVGNNLKSLEASEEKASEREDEYEEKIRDLEEKLKEAENR 191 (237)
T ss_dssp HHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhchhHHHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444556666667776666665555555 33333 33333333333222 22334466666666655
Q ss_pred hhhhcccccccccCCccchhhHHHHHHHHHHHHHHhhhh
Q 005043 638 QEEANSLSNIVHSDNVRLEHDVAFLKAVLDDTQKELHST 676 (717)
Q Consensus 638 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 676 (717)
-|.+-.-++..-..+=+||-++.--|.=...+++||++|
T Consensus 192 ae~aE~~v~~Le~~id~le~eL~~~k~~~~~~~~eld~~ 230 (237)
T PF00261_consen 192 AEFAERRVKKLEKEIDRLEDELEKEKEKYKKVQEELDQT 230 (237)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 555544344444444566666666565555666666654
No 169
>PRK09039 hypothetical protein; Validated
Probab=82.44 E-value=4.1 Score=44.60 Aligned_cols=41 Identities=15% Similarity=0.132 Sum_probs=28.1
Q ss_pred chHHHHHHHHHHHHHHHhcchhHHHHHHHhhHHHHHhhhhh
Q 005043 565 SSIYQFYESKMAALIRKNGILEGQLAAALVNREAAEKNFSS 605 (717)
Q Consensus 565 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~ 605 (717)
+++..+...+.+++=.+-+.|+.|+++|.+.|+.+|..++.
T Consensus 66 ~e~L~le~~~~~~l~~~l~~l~~~l~~a~~~r~~Le~~~~~ 106 (343)
T PRK09039 66 ADLLSLERQGNQDLQDSVANLRASLSAAEAERSRLQALLAE 106 (343)
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 34455666666666667777777777888888777775553
No 170
>PF12777 MT: Microtubule-binding stalk of dynein motor; InterPro: IPR024743 The 380 kDa motor unit of dynein belongs to the AAA class of chaperone-like ATPases. The core of the 380 kDa motor unit contains a concatenated chain of six AAA modules (D1-6), of which four correspond to the ATP binding sites with P-loop signatures, and two are modules in which the P loop has been lost in evolution. This domain occurs between D4 and D5 and includes the two predicted alpha-helical coiled coil segments that form the stalk supporting the ATP-sensitive microtubule binding component [].; PDB: 3VKH_A 3VKG_A 3ERR_A 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 2RR7_A.
Probab=81.42 E-value=1.8 Score=47.40 Aligned_cols=95 Identities=17% Similarity=0.187 Sum_probs=82.1
Q ss_pred HHHHHHHHHhcchhHHHHHHHhhHHHHHhhhhhHHhhHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhcccccccccCC
Q 005043 573 SKMAALIRKNGILEGQLAAALVNREAAEKNFSSVLKSRQEMEKKLADSLKEMELLKEKLAGLELAQEEANSLSNIVHSDN 652 (717)
Q Consensus 573 ~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 652 (717)
.++.-+..+-+.++.+|+.+.+..++.++.|..+-+.-+.+++++.+..+|...|++++...+.--+-|+.|-+-..+++
T Consensus 214 ~~V~P~~~~l~~a~~~l~~~~~~L~~~~~~l~~l~~~l~~l~~~~~~~~~e~~~l~~~~~~~~~kl~rA~~Li~~L~~E~ 293 (344)
T PF12777_consen 214 KEVEPKRQKLEEAEAELEEAEEQLAEKQAELAELEEKLAALQKEYEEAQKEKQELEEEIEETERKLERAEKLISGLSGEK 293 (344)
T ss_dssp CCCCHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHH
T ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccHHHHHhhhcchh
Confidence 44555677777888999999999999999999999999999999999999999999999998888888889999999999
Q ss_pred ccchhhHHHHHHHHH
Q 005043 653 VRLEHDVAFLKAVLD 667 (717)
Q Consensus 653 ~~~~~~~~~~~~~~~ 667 (717)
+|-++.++-|+.-+.
T Consensus 294 ~RW~~~~~~l~~~~~ 308 (344)
T PF12777_consen 294 ERWSEQIEELEEQLK 308 (344)
T ss_dssp HCCHCHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHhc
Confidence 999999887765443
No 171
>COG4257 Vgb Streptogramin lyase [Defense mechanisms]
Probab=81.19 E-value=55 Score=34.62 Aligned_cols=112 Identities=18% Similarity=0.173 Sum_probs=62.4
Q ss_pred CCEEEEEeccCCCCCCceEEEEEECCCCcEEEeeecCCCCCCc-eeeEEEEE--CCEEEEEccccCCCCCcCcEEEEEcC
Q 005043 156 GKKVLLVGGKTDSGSDRVSVWTFDTETECWSVVEAKGDIPVAR-SGHTVVRA--SSVLILFGGEDGKRRKLNDLHMFDLK 232 (717)
Q Consensus 156 ~~~Iyv~GG~~~~~~~~~~v~~yD~~t~~W~~l~~~g~~P~~R-~~hs~~~~--~~~Lyv~GG~~~~~~~~~~v~~yD~~ 232 (717)
++.+|+.-=. -+-+-+.|+.+..=+.++ .|.+. .+.--+.. -+.+++. . .-...+++|||.
T Consensus 199 dGsvwyasla------gnaiaridp~~~~aev~p----~P~~~~~gsRriwsdpig~~wit----t--wg~g~l~rfdPs 262 (353)
T COG4257 199 DGSVWYASLA------GNAIARIDPFAGHAEVVP----QPNALKAGSRRIWSDPIGRAWIT----T--WGTGSLHRFDPS 262 (353)
T ss_pred CCcEEEEecc------ccceEEcccccCCcceec----CCCcccccccccccCccCcEEEe----c--cCCceeeEeCcc
Confidence 6677765111 123666777776545544 23331 11111222 2577776 1 124679999999
Q ss_pred CCceEeccCCCCCCCCCcccEEEEECCc-EEEEEcCCCCCCCCCeEEEEECCCCcEEEeec
Q 005043 233 SLTWLPLHCTGTGPSPRSNHVAALYDDK-NLLIFGGSSKSKTLNDLYSLDFETMIWTRIKI 292 (717)
Q Consensus 233 t~~W~~l~~~g~~P~~R~~~aa~~~~~~-~lyV~GG~~~~~~~ndv~~yd~~t~~W~~v~~ 292 (717)
+..|.+.+..+.- +|-. ...+++. ++++. - --.+.|.+||+++.+.+.++.
T Consensus 263 ~~sW~eypLPgs~--arpy--s~rVD~~grVW~s-e----a~agai~rfdpeta~ftv~p~ 314 (353)
T COG4257 263 VTSWIEYPLPGSK--ARPY--SMRVDRHGRVWLS-E----ADAGAIGRFDPETARFTVLPI 314 (353)
T ss_pred cccceeeeCCCCC--CCcc--eeeeccCCcEEee-c----cccCceeecCcccceEEEecC
Confidence 9999988533322 2222 3333332 35542 1 123569999999999998843
No 172
>PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit. CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A ....
Probab=81.19 E-value=82 Score=33.73 Aligned_cols=130 Identities=12% Similarity=0.120 Sum_probs=72.0
Q ss_pred CEEEEEccccCC---CCCc-CcEEEEEcCCC-----ceEeccCCCCCCCCCcccEEEEECCcEEEEEcCCCCCCCCCeEE
Q 005043 208 SVLILFGGEDGK---RRKL-NDLHMFDLKSL-----TWLPLHCTGTGPSPRSNHVAALYDDKNLLIFGGSSKSKTLNDLY 278 (717)
Q Consensus 208 ~~Lyv~GG~~~~---~~~~-~~v~~yD~~t~-----~W~~l~~~g~~P~~R~~~aa~~~~~~~lyV~GG~~~~~~~ndv~ 278 (717)
...+++|..-.. .... ..++.|+.... ++..+. ..+..-.-.+.+.+++. +++.-| +.+.
T Consensus 42 ~~~ivVGT~~~~~~~~~~~~Gri~v~~i~~~~~~~~~l~~i~---~~~~~g~V~ai~~~~~~-lv~~~g-------~~l~ 110 (321)
T PF03178_consen 42 KEYIVVGTAFNYGEDPEPSSGRILVFEISESPENNFKLKLIH---STEVKGPVTAICSFNGR-LVVAVG-------NKLY 110 (321)
T ss_dssp SEEEEEEEEE--TTSSS-S-EEEEEEEECSS-----EEEEEE---EEEESS-EEEEEEETTE-EEEEET-------TEEE
T ss_pred cCEEEEEecccccccccccCcEEEEEEEEcccccceEEEEEE---EEeecCcceEhhhhCCE-EEEeec-------CEEE
Confidence 356666654221 1122 66999999884 555443 22222335566777777 555544 3588
Q ss_pred EEECCCCc-EEEeecCCCCCCCCcceEEEEECCEEEEEecCCCCCccCeEEEEECCCCcEEEeecCCCCCCCCCcceEEE
Q 005043 279 SLDFETMI-WTRIKIRGFHPSPRAGCCGVLCGTKWYIAGGGSRKKRHAETLIFDILKGEWSVAITSPSSSVTSNKGFTLV 357 (717)
Q Consensus 279 ~yd~~t~~-W~~v~~~g~~P~~R~~~sav~~~~~IyV~GG~~~~~~~~dv~~yD~~t~~W~~l~~~p~~~~~~r~g~s~v 357 (717)
.|++.... |...... ..+-...++...++.|+ +|-.... -.++.|+....+-..++.. ..++.-.++.
T Consensus 111 v~~l~~~~~l~~~~~~---~~~~~i~sl~~~~~~I~-vgD~~~s---v~~~~~~~~~~~l~~va~d----~~~~~v~~~~ 179 (321)
T PF03178_consen 111 VYDLDNSKTLLKKAFY---DSPFYITSLSVFKNYIL-VGDAMKS---VSLLRYDEENNKLILVARD----YQPRWVTAAE 179 (321)
T ss_dssp EEEEETTSSEEEEEEE----BSSSEEEEEEETTEEE-EEESSSS---EEEEEEETTTE-EEEEEEE----SS-BEEEEEE
T ss_pred EEEccCcccchhhhee---cceEEEEEEeccccEEE-EEEcccC---EEEEEEEccCCEEEEEEec----CCCccEEEEE
Confidence 88888887 8888764 33335556666778655 4433222 2355678766667777632 2244444444
Q ss_pred EE
Q 005043 358 LV 359 (717)
Q Consensus 358 ~v 359 (717)
.+
T Consensus 180 ~l 181 (321)
T PF03178_consen 180 FL 181 (321)
T ss_dssp EE
T ss_pred Ee
Confidence 44
No 173
>PRK11281 hypothetical protein; Provisional
Probab=80.81 E-value=4.3 Score=50.96 Aligned_cols=136 Identities=18% Similarity=0.238 Sum_probs=86.6
Q ss_pred HHHHHHHHHhcchhHHHHHHHhhHHHHHhhhhhHHhhHH---HHHHHHHHHHHHHHHHHHHHhhhhhhhhhhcccccccc
Q 005043 573 SKMAALIRKNGILEGQLAAALVNREAAEKNFSSVLKSRQ---EMEKKLADSLKEMELLKEKLAGLELAQEEANSLSNIVH 649 (717)
Q Consensus 573 ~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~---~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 649 (717)
.++.++ .+....|++-.++.+..+++-..+..+-+.++ +++++++++-++++..+++++.+....+.... .+.-.
T Consensus 43 ~~l~~~-~~~~~~~~~~k~~~~~l~~tL~~L~qi~~~~~~~~~L~k~l~~Ap~~l~~a~~~Le~Lk~~~~~~~~-~~~~~ 120 (1113)
T PRK11281 43 AQLDAL-NKQKLLEAEDKLVQQDLEQTLALLDKIDRQKEETEQLKQQLAQAPAKLRQAQAELEALKDDNDEETR-ETLST 120 (1113)
T ss_pred HHHHHh-hcCCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhhcccccccc-ccccc
Confidence 445554 33455665555555555555555555544443 46777777777777777777654432111110 11111
Q ss_pred cCCccchhhHHHHHHHHHHHHHHhhhhccchhhccccceeeEEEeehhhhhhhhhcccCCC
Q 005043 650 SDNVRLEHDVAFLKAVLDDTQKELHSTRGVLAGERARAFQLQVEVFHLKQRLQSLENRAPT 710 (717)
Q Consensus 650 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 710 (717)
..--.||..++=+.+-|.+.|++|-..-..|++-++|-=.-|-...+-.+|+|.++++-..
T Consensus 121 ~Sl~qLEq~L~q~~~~Lq~~Q~~La~~NsqLi~~qT~PERAQ~~lsea~~RlqeI~~~L~~ 181 (1113)
T PRK11281 121 LSLRQLESRLAQTLDQLQNAQNDLAEYNSQLVSLQTQPERAQAALYANSQRLQQIRNLLKG 181 (1113)
T ss_pred cCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHHHHHHhC
Confidence 1112378888888888888888888888888888888878888889999999999877543
No 174
>PF14197 Cep57_CLD_2: Centrosome localisation domain of PPC89
Probab=80.41 E-value=11 Score=31.26 Aligned_cols=59 Identities=20% Similarity=0.295 Sum_probs=44.6
Q ss_pred HHHHHHHHHHHHHhcchhHHHHHHHhhHHHHHhhhhhHHhhHHHHHHHHHHHHHHHHHH
Q 005043 569 QFYESKMAALIRKNGILEGQLAAALVNREAAEKNFSSVLKSRQEMEKKLADSLKEMELL 627 (717)
Q Consensus 569 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~l 627 (717)
.....++..+.|+++..+.-+..-..+++.++..|..+....+++..++...-+|.+.+
T Consensus 8 ~~Lr~rLd~~~rk~~~~~~~~k~L~~ERd~~~~~l~~a~~e~~~Lk~E~e~L~~el~~~ 66 (69)
T PF14197_consen 8 ATLRNRLDSLTRKNSVHEIENKRLRRERDSAERQLGDAYEENNKLKEENEALRKELEEL 66 (69)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 35566777788888888888888888888888888888888877777777777664443
No 175
>PF05529 Bap31: B-cell receptor-associated protein 31-like ; InterPro: IPR008417 Bap31 is a polytopic integral protein of the endoplasmic reticulum membrane and a substrate of caspase-8. Bap31 is cleaved within its cytosolic domain, generating pro-apoptotic p20 Bap31 [].; GO: 0006886 intracellular protein transport, 0005783 endoplasmic reticulum, 0016021 integral to membrane
Probab=80.15 E-value=9 Score=38.19 Aligned_cols=26 Identities=35% Similarity=0.526 Sum_probs=11.2
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHhhh
Q 005043 609 SRQEMEKKLADSLKEMELLKEKLAGL 634 (717)
Q Consensus 609 ~~~~~~~~~~~~~~~~~~l~~~~~~~ 634 (717)
..++++++|+...+|+|.||++..++
T Consensus 162 ei~~lk~el~~~~~~~~~LkkQ~~~l 187 (192)
T PF05529_consen 162 EIEKLKKELEKKEKEIEALKKQSEGL 187 (192)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444444444444444444443
No 176
>PF15619 Lebercilin: Ciliary protein causing Leber congenital amaurosis disease
Probab=79.86 E-value=6.3 Score=39.53 Aligned_cols=75 Identities=29% Similarity=0.391 Sum_probs=51.6
Q ss_pred HhhHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhcccccccccCCccchhhHHHHHHHHHHHHHHhhhhccchhhcccc
Q 005043 607 LKSRQEMEKKLADSLKEMELLKEKLAGLELAQEEANSLSNIVHSDNVRLEHDVAFLKAVLDDTQKELHSTRGVLAGERAR 686 (717)
Q Consensus 607 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 686 (717)
|..|+++..+|..+..+++.-.+|+..+|.-=|-+|+ -.-|++++.+-=..++|.|+.+
T Consensus 117 L~eReeL~~kL~~~~~~l~~~~~ki~~Lek~leL~~k----------~~~rql~~e~kK~~~~~~~~~~----------- 175 (194)
T PF15619_consen 117 LAEREELQRKLSQLEQKLQEKEKKIQELEKQLELENK----------SFRRQLASEKKKHKEAQEEVKS----------- 175 (194)
T ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh----------HHHHHHHHHHHHHHHHHHHHHH-----------
Confidence 4557888888888888888888888887764343333 2346666666666666666654
Q ss_pred ceeeEEEeehhhhhhhhhc
Q 005043 687 AFQLQVEVFHLKQRLQSLE 705 (717)
Q Consensus 687 ~~~~~~~~~~~~~~~~~~~ 705 (717)
||.||.+|.|+|..-|
T Consensus 176 ---l~~ei~~L~~klkEKe 191 (194)
T PF15619_consen 176 ---LQEEIQRLNQKLKEKE 191 (194)
T ss_pred ---HHHHHHHHHHHHHHHh
Confidence 5688888988887644
No 177
>PF11932 DUF3450: Protein of unknown function (DUF3450); InterPro: IPR016866 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function. However, they are found in an operon along with components of a TonB transport system (typified by Vibrio cholerae TonB2 [], and are predicted to be localized to the periplasmic space. Caution: the low-complexity nature of these sequences produces spurious BLAST hits to chromosome segregation ATPases (which are much longer in length and contain canonical Walker motifs). Accordingly, some members are misidentified as such.
Probab=79.18 E-value=10 Score=39.60 Aligned_cols=86 Identities=21% Similarity=0.318 Sum_probs=54.7
Q ss_pred chhHHHHHHHhhHHHHHhhhhhHHhhHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhh--------hcccccccccCCccc
Q 005043 584 ILEGQLAAALVNREAAEKNFSSVLKSRQEMEKKLADSLKEMELLKEKLAGLELAQEE--------ANSLSNIVHSDNVRL 655 (717)
Q Consensus 584 ~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~ 655 (717)
.+..|-...++..+++++.+...-...+++++.++...++++.|+++++.++..+.+ ...|...|+.|-.=+
T Consensus 46 ~~~~e~~~L~~e~~~l~~e~e~L~~~~~~l~~~v~~q~~el~~L~~qi~~~~~~~~~l~p~m~~m~~~L~~~v~~d~Pf~ 125 (251)
T PF11932_consen 46 QWDDEKQELLAEYRQLEREIENLEVYNEQLERQVASQEQELASLEQQIEQIEETRQELVPLMEQMIDELEQFVELDLPFL 125 (251)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCC
Confidence 344444444555555566666666667777777777777777777777777766643 344667777766444
Q ss_pred hh----hHHHHHHHHHHH
Q 005043 656 EH----DVAFLKAVLDDT 669 (717)
Q Consensus 656 ~~----~~~~~~~~~~~~ 669 (717)
.. =|++|++.|++.
T Consensus 126 ~~eR~~Rl~~L~~~l~~~ 143 (251)
T PF11932_consen 126 LEERQERLARLRAMLDDA 143 (251)
T ss_pred hHHHHHHHHHHHHhhhcc
Confidence 43 278888777665
No 178
>PF09910 DUF2139: Uncharacterized protein conserved in archaea (DUF2139); InterPro: IPR016675 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=78.87 E-value=97 Score=33.15 Aligned_cols=141 Identities=13% Similarity=0.044 Sum_probs=74.0
Q ss_pred eEEEEEECCCCcEEEeeecCCCCCCceeeEEE---E---ECCEEEEEccccCCCCCcCcEEEEEcCCCceEeccCCCCCC
Q 005043 173 VSVWTFDTETECWSVVEAKGDIPVARSGHTVV---R---ASSVLILFGGEDGKRRKLNDLHMFDLKSLTWLPLHCTGTGP 246 (717)
Q Consensus 173 ~~v~~yD~~t~~W~~l~~~g~~P~~R~~hs~~---~---~~~~Lyv~GG~~~~~~~~~~v~~yD~~t~~W~~l~~~g~~P 246 (717)
+.|..||+.+++-+.+=.. .+-.++.-.+=+ . +++.||+.-+- +..--.+|..|.+++.-+.+. .-|
T Consensus 78 SHVH~yd~e~~~VrLLWke-sih~~~~WaGEVSdIlYdP~~D~LLlAR~D---Gh~nLGvy~ldr~~g~~~~L~---~~p 150 (339)
T PF09910_consen 78 SHVHEYDTENDSVRLLWKE-SIHDKTKWAGEVSDILYDPYEDRLLLARAD---GHANLGVYSLDRRTGKAEKLS---SNP 150 (339)
T ss_pred ceEEEEEcCCCeEEEEEec-ccCCccccccchhheeeCCCcCEEEEEecC---CcceeeeEEEcccCCceeecc---CCC
Confidence 3699999998873333211 122222211111 1 25788887432 222345899999999888886 344
Q ss_pred CCCcccEEEEECCcEEEEEcCCCCCCCCCeEEEEECCCCcE--EEeecCC----CCCCCCcceEEEEECCEEEEEecCCC
Q 005043 247 SPRSNHVAALYDDKNLLIFGGSSKSKTLNDLYSLDFETMIW--TRIKIRG----FHPSPRAGCCGVLCGTKWYIAGGGSR 320 (717)
Q Consensus 247 ~~R~~~aa~~~~~~~lyV~GG~~~~~~~ndv~~yd~~t~~W--~~v~~~g----~~P~~R~~~sav~~~~~IyV~GG~~~ 320 (717)
.+. .+.+++.. +|-+ .+...-.+.+.+||+.+++| +..+... .....|..-.++...+++|.|=+.
T Consensus 151 s~K---G~~~~D~a-~F~i--~~~~~g~~~i~~~Dli~~~~~~e~f~~~~s~Dg~~~~~~~~G~~~s~ynR~faF~rG-- 222 (339)
T PF09910_consen 151 SLK---GTLVHDYA-CFGI--NNFHKGVSGIHCLDLISGKWVIESFDVSLSVDGGPVIRPELGAMASAYNRLFAFVRG-- 222 (339)
T ss_pred CcC---ceEeeeeE-EEec--cccccCCceEEEEEccCCeEEEEecccccCCCCCceEeeccccEEEEeeeEEEEEec--
Confidence 432 22222222 3322 22234467899999999999 4333211 111123333455566776655331
Q ss_pred CCccCeEEEEECC
Q 005043 321 KKRHAETLIFDIL 333 (717)
Q Consensus 321 ~~~~~dv~~yD~~ 333 (717)
-+.+.||-
T Consensus 223 -----Gi~vgnP~ 230 (339)
T PF09910_consen 223 -----GIFVGNPY 230 (339)
T ss_pred -----cEEEeCCC
Confidence 26666665
No 179
>COG1196 Smc Chromosome segregation ATPases [Cell division and chromosome partitioning]
Probab=78.84 E-value=6 Score=50.54 Aligned_cols=58 Identities=28% Similarity=0.333 Sum_probs=25.0
Q ss_pred HHHHhcchhHHHHHHHhhHHHHHhhhhhHHhhHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 005043 578 LIRKNGILEGQLAAALVNREAAEKNFSSVLKSRQEMEKKLADSLKEMELLKEKLAGLE 635 (717)
Q Consensus 578 ~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 635 (717)
+-++.+.+..+++++....++.+..+..+-+.++++..++..+.++++.+++++..++
T Consensus 714 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 771 (1163)
T COG1196 714 LERQLEELKRELAALEEELEQLQSRLEELEEELEELEEELEELQERLEELEEELESLE 771 (1163)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333344444444444444444444444444444444444444444444444444433
No 180
>COG1520 FOG: WD40-like repeat [Function unknown]
Probab=78.83 E-value=1.1e+02 Score=33.63 Aligned_cols=196 Identities=13% Similarity=0.092 Sum_probs=93.0
Q ss_pred CCEEEEEcccCCCCCcccEEEEEcCC--CceEEccccccCCCCCCCCCCCcccceEEEEECCEEEEEeccCCCCCCceEE
Q 005043 98 GNKMIVVGGESGNGLLDDVQVLNFDR--FSWTAASSKLYLSPSSLPLKIPACRGHSLISWGKKVLLVGGKTDSGSDRVSV 175 (717)
Q Consensus 98 ~~~lyV~GG~~~~~~~~~v~~yd~~t--~~W~~l~~~~~~~~~~~~~~~p~r~~hs~v~~~~~Iyv~GG~~~~~~~~~~v 175 (717)
+++||+-.. ++ .+++||..+ ..|..-... . .+..-..++.++.+|+.- ....+
T Consensus 111 ~G~i~~g~~-~g-----~~y~ld~~~G~~~W~~~~~~-----------~-~~~~~~~v~~~~~v~~~s-------~~g~~ 165 (370)
T COG1520 111 DGKIYVGSW-DG-----KLYALDASTGTLVWSRNVGG-----------S-PYYASPPVVGDGTVYVGT-------DDGHL 165 (370)
T ss_pred CCeEEEecc-cc-----eEEEEECCCCcEEEEEecCC-----------C-eEEecCcEEcCcEEEEec-------CCCeE
Confidence 677665443 32 689999954 378877651 1 122223344455666553 12368
Q ss_pred EEEECCCC--cEEEeeecCCCCCCceeeEEEEECCEEEEEccccCCCCCcCcEEEEEcCCC--ceEecc--CCCCCC---
Q 005043 176 WTFDTETE--CWSVVEAKGDIPVARSGHTVVRASSVLILFGGEDGKRRKLNDLHMFDLKSL--TWLPLH--CTGTGP--- 246 (717)
Q Consensus 176 ~~yD~~t~--~W~~l~~~g~~P~~R~~hs~~~~~~~Lyv~GG~~~~~~~~~~v~~yD~~t~--~W~~l~--~~g~~P--- 246 (717)
+.+|..+. .|..-...+ . ..+.....+..++.+|+-. .. ....++.+|+.++ .|..-. ..+...
T Consensus 166 ~al~~~tG~~~W~~~~~~~-~-~~~~~~~~~~~~~~vy~~~-~~----~~~~~~a~~~~~G~~~w~~~~~~~~~~~~~~~ 238 (370)
T COG1520 166 YALNADTGTLKWTYETPAP-L-SLSIYGSPAIASGTVYVGS-DG----YDGILYALNAEDGTLKWSQKVSQTIGRTAIST 238 (370)
T ss_pred EEEEccCCcEEEEEecCCc-c-ccccccCceeecceEEEec-CC----CcceEEEEEccCCcEeeeeeeecccCcccccc
Confidence 88888765 487544211 1 2222222224455566542 21 1226899999765 487421 111110
Q ss_pred CCCcccEEEEECCcEEEEEcCCCCCCCCCeEEEEECCCC--cEEEeecCCCCCCCCcceEEEEECCEEEEEecCCCCCcc
Q 005043 247 SPRSNHVAALYDDKNLLIFGGSSKSKTLNDLYSLDFETM--IWTRIKIRGFHPSPRAGCCGVLCGTKWYIAGGGSRKKRH 324 (717)
Q Consensus 247 ~~R~~~aa~~~~~~~lyV~GG~~~~~~~ndv~~yd~~t~--~W~~v~~~g~~P~~R~~~sav~~~~~IyV~GG~~~~~~~ 324 (717)
.+......+.+++. +|..+ ....++++|..+. .|+.-........+........-++++|+..........
T Consensus 239 ~~~~~~~~v~v~~~-~~~~~------~~g~~~~l~~~~G~~~W~~~~~~~~~~~~~~~~~~~~~dG~v~~~~~~~~~~~~ 311 (370)
T COG1520 239 TPAVDGGPVYVDGG-VYAGS------YGGKLLCLDADTGELIWSFPAGGSVQGSGLYTTPVAGADGKVYIGFTDNDGRGS 311 (370)
T ss_pred cccccCceEEECCc-EEEEe------cCCeEEEEEcCCCceEEEEecccEeccCCeeEEeecCCCccEEEEEeccccccc
Confidence 12222223333333 22222 1233777877654 477654310011122222222237788887654332234
Q ss_pred CeEEEEEC
Q 005043 325 AETLIFDI 332 (717)
Q Consensus 325 ~dv~~yD~ 332 (717)
..+++++.
T Consensus 312 ~~~~~~~~ 319 (370)
T COG1520 312 GSLYALAD 319 (370)
T ss_pred cceEEEec
Confidence 55677775
No 181
>PF04012 PspA_IM30: PspA/IM30 family; InterPro: IPR007157 This family includes PspA a protein that suppresses sigma54-dependent transcription. The PspA protein, a negative regulator of the Escherichia coli phage shock psp operon, is produced when virulence factors are exported through secretins in many Gram-negative pathogenic bacteria and its homologue in plants, VIPP1, plays a critical role in thylakoid biogenesis, essential for photosynthesis. Activation of transcription by the enhancer-dependent bacterial sigma54-containing RNA polymerase occurs through ATP hydrolysis-driven protein conformational changes enabled by activator proteins that belong to the large AAA(+) mechanochemical protein family. It has been shown that PspA directly and specifically acts upon and binds to the AAA(+) domain of the PspF transcription activator [].
Probab=78.72 E-value=17 Score=37.00 Aligned_cols=68 Identities=16% Similarity=0.273 Sum_probs=53.3
Q ss_pred HHHHHHHHHHHHHHHhc----chhHHHHHHHhhHHHHHhhhhhHHhhHHHHHHHHHHHHHHHHHHHHHHhhh
Q 005043 567 IYQFYESKMAALIRKNG----ILEGQLAAALVNREAAEKNFSSVLKSRQEMEKKLADSLKEMELLKEKLAGL 634 (717)
Q Consensus 567 ~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 634 (717)
|-......+..++-+.+ +|+..+..+-....++++.++.+.-.+..+++++....++++.+.++...+
T Consensus 6 l~~~~~a~~~~~ld~~EDP~~~l~q~ird~e~~l~~a~~~~a~~~a~~~~le~~~~~~~~~~~~~~~~A~~A 77 (221)
T PF04012_consen 6 LKTLVKANINELLDKAEDPEKMLEQAIRDMEEQLRKARQALARVMANQKRLERKLDEAEEEAEKWEKQAELA 77 (221)
T ss_pred HHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455666666666654 788888888888888999999999999999999999999998888776544
No 182
>COG4942 Membrane-bound metallopeptidase [Cell division and chromosome partitioning]
Probab=78.35 E-value=8 Score=43.01 Aligned_cols=81 Identities=26% Similarity=0.259 Sum_probs=50.2
Q ss_pred HHHHHHHhhHHHHHhhhhhHHhhHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhcccccccccCCccchhhHHHHHHHH
Q 005043 587 GQLAAALVNREAAEKNFSSVLKSRQEMEKKLADSLKEMELLKEKLAGLELAQEEANSLSNIVHSDNVRLEHDVAFLKAVL 666 (717)
Q Consensus 587 ~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 666 (717)
.||.......++.|+++...=+.++++++.|++..+|+..+++.|...+ .|+-.++.+++-+-+-|
T Consensus 38 ~~l~q~q~ei~~~~~~i~~~~~~~~kL~~~lk~~e~~i~~~~~ql~~s~--------------~~l~~~~~~I~~~~~~l 103 (420)
T COG4942 38 KQLKQIQKEIAALEKKIREQQDQRAKLEKQLKSLETEIASLEAQLIETA--------------DDLKKLRKQIADLNARL 103 (420)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------------hHHHHHHhhHHHHHHHH
Confidence 4566666666677777777777777777777777777777666665554 22334455666666666
Q ss_pred HHHHHHhhhhccchh
Q 005043 667 DDTQKELHSTRGVLA 681 (717)
Q Consensus 667 ~~~~~~~~~~~~~~~ 681 (717)
...+.+.---|++||
T Consensus 104 ~~l~~q~r~qr~~La 118 (420)
T COG4942 104 NALEVQEREQRRRLA 118 (420)
T ss_pred HHHHHHHHHHHHHHH
Confidence 666655544555554
No 183
>KOG2321 consensus WD40 repeat protein [General function prediction only]
Probab=78.20 E-value=52 Score=37.89 Aligned_cols=126 Identities=17% Similarity=0.148 Sum_probs=64.1
Q ss_pred CCCCceeeEEEEEC--CEEEEEccccCCCCCcCcEEEEEcCCCceEeccCCCCCCCCCcccEEEEECCcEEEEEcCCCCC
Q 005043 194 IPVARSGHTVVRAS--SVLILFGGEDGKRRKLNDLHMFDLKSLTWLPLHCTGTGPSPRSNHVAALYDDKNLLIFGGSSKS 271 (717)
Q Consensus 194 ~P~~R~~hs~~~~~--~~Lyv~GG~~~~~~~~~~v~~yD~~t~~W~~l~~~g~~P~~R~~~aa~~~~~~~lyV~GG~~~~ 271 (717)
+..|+++.-+++.. -.||+.| .-.++|+||+..+.|-..- ..-.+-..+..+.--++ |+.+||..+
T Consensus 130 ~RIP~~GRDm~y~~~scDly~~g-------sg~evYRlNLEqGrfL~P~---~~~~~~lN~v~in~~hg-Lla~Gt~~g- 197 (703)
T KOG2321|consen 130 TRIPKFGRDMKYHKPSCDLYLVG-------SGSEVYRLNLEQGRFLNPF---ETDSGELNVVSINEEHG-LLACGTEDG- 197 (703)
T ss_pred eecCcCCccccccCCCccEEEee-------cCcceEEEEcccccccccc---ccccccceeeeecCccc-eEEecccCc-
Confidence 34455666665543 3466664 2367999999999986431 11111112211111234 889998754
Q ss_pred CCCCeEEEEECCCCcEEE-eec---CCCCCCCCc--ceEEEEE-CCEEEEEecCCCCCccCeEEEEECCCCcEEE
Q 005043 272 KTLNDLYSLDFETMIWTR-IKI---RGFHPSPRA--GCCGVLC-GTKWYIAGGGSRKKRHAETLIFDILKGEWSV 339 (717)
Q Consensus 272 ~~~ndv~~yd~~t~~W~~-v~~---~g~~P~~R~--~~sav~~-~~~IyV~GG~~~~~~~~dv~~yD~~t~~W~~ 339 (717)
.|+.||+.+..-.. +.. ....|..-. ..+++.+ ++-|-|.=|... ..+++||+.+.+=..
T Consensus 198 ----~VEfwDpR~ksrv~~l~~~~~v~s~pg~~~~~svTal~F~d~gL~~aVGts~----G~v~iyDLRa~~pl~ 264 (703)
T KOG2321|consen 198 ----VVEFWDPRDKSRVGTLDAASSVNSHPGGDAAPSVTALKFRDDGLHVAVGTST----GSVLIYDLRASKPLL 264 (703)
T ss_pred ----eEEEecchhhhhheeeecccccCCCccccccCcceEEEecCCceeEEeeccC----CcEEEEEcccCCcee
Confidence 48899986644221 111 011122211 1233333 435544444332 348999997755333
No 184
>cd00632 Prefoldin_beta Prefoldin beta; Prefoldin is a hexameric molecular chaperone complex, composed of two evolutionarily related subunits (alpha and beta), which are found in both eukaryotes and archaea. Prefoldin binds and stabilizes newly synthesized polypeptides allowing them to fold correctly. The hexameric structure consists of a double beta barrel assembly with six protruding coiled-coils. The alpha prefoldin subunits have two beta hairpin structures while the beta prefoldin subunits (this CD) have only one hairpin that is most similar to the second hairpin of the alpha subunit. The prefoldin hexamer consists of two alpha and four beta subunits and is assembled from the beta hairpins of all six subunits. The alpha subunits initially dimerize providing a structural nucleus for the assembly of the beta subunits. In archaea, there is usually only one gene for each subunit while in eukaryotes there two or more paralogous genes encoding each subunit adding heterogeneity to the st
Probab=78.16 E-value=15 Score=32.88 Aligned_cols=34 Identities=26% Similarity=0.238 Sum_probs=26.5
Q ss_pred HHHHHHHHHHHHHHhcchhHHHHHHHhhHHHHHh
Q 005043 568 YQFYESKMAALIRKNGILEGQLAAALVNREAAEK 601 (717)
Q Consensus 568 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~ 601 (717)
||.|..++..+...-..|+.|+...-...++.+.
T Consensus 8 ~q~l~~~~~~l~~~~~~l~~~~~E~~~v~~EL~~ 41 (105)
T cd00632 8 LQQLQQQLQAYIVQRQKVEAQLNENKKALEELEK 41 (105)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 5788888999999999999999766665555553
No 185
>PF00261 Tropomyosin: Tropomyosin; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].; PDB: 2EFR_A 2Z5H_C 2Z5I_D 2D3E_B 2EFS_D 3U59_B 1C1G_C 1IHQ_A 3AZD_B 1MV4_B ....
Probab=77.91 E-value=1.4 Score=45.57 Aligned_cols=138 Identities=26% Similarity=0.327 Sum_probs=92.9
Q ss_pred HHHHHHHHHHHHHhcchhHHHH-------HHHhhHHHHHhhhhhHHhhHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhh
Q 005043 569 QFYESKMAALIRKNGILEGQLA-------AALVNREAAEKNFSSVLKSRQEMEKKLADSLKEMELLKEKLAGLELAQEEA 641 (717)
Q Consensus 569 ~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 641 (717)
...+..++.|-||...||.+|. .+.+-.++++|.+..+-+.+..+|.+.......++.|..+|..++..-+++
T Consensus 32 ~~aE~e~~~l~rri~~lE~~le~~eerL~~~~~kL~~~e~~~de~er~~k~lE~r~~~~eeri~~lE~~l~ea~~~~ee~ 111 (237)
T PF00261_consen 32 EKAEAEVASLQRRIQLLEEELERAEERLEEATEKLEEAEKRADESERARKVLENREQSDEERIEELEQQLKEAKRRAEEA 111 (237)
T ss_dssp HHHHHHHHHHHHHHHHHHCCCHHHHCCCCHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3556667777777776665554 556677888888888888888999999999999999888888888877776
Q ss_pred cccccccccCCccchhh-------HHHHHHHHHHHHHHhhhhccch---------hhccccceeeEEEeehhhhhhhhhc
Q 005043 642 NSLSNIVHSDNVRLEHD-------VAFLKAVLDDTQKELHSTRGVL---------AGERARAFQLQVEVFHLKQRLQSLE 705 (717)
Q Consensus 642 ~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~ 705 (717)
..-.-=|..--..+|+| +.=+-.=+.+.+.+|+.+..-| +.+|--.|.= .+-+|.++|...|
T Consensus 112 e~k~~E~~rkl~~~E~~Le~aEeR~e~~E~ki~eLE~el~~~~~~lk~lE~~~~~~~~re~~~e~--~i~~L~~~lkeaE 189 (237)
T PF00261_consen 112 ERKYEEVERKLKVLEQELERAEERAEAAESKIKELEEELKSVGNNLKSLEASEEKASEREDEYEE--KIRDLEEKLKEAE 189 (237)
T ss_dssp HHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhchhHHHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHH--HHHHHHHHHHHHH
Confidence 65222222222234444 3444555667778888877766 3333333332 3567888888888
Q ss_pred ccC
Q 005043 706 NRA 708 (717)
Q Consensus 706 ~~~ 708 (717)
+|+
T Consensus 190 ~Ra 192 (237)
T PF00261_consen 190 NRA 192 (237)
T ss_dssp HHH
T ss_pred HHH
Confidence 875
No 186
>PHA02562 46 endonuclease subunit; Provisional
Probab=77.14 E-value=8.5 Score=44.88 Aligned_cols=95 Identities=11% Similarity=0.085 Sum_probs=52.5
Q ss_pred chhHHHHHHHhhHHHHHhhhhhHHhhHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhc-----ccccccccCCccchhh
Q 005043 584 ILEGQLAAALVNREAAEKNFSSVLKSRQEMEKKLADSLKEMELLKEKLAGLELAQEEAN-----SLSNIVHSDNVRLEHD 658 (717)
Q Consensus 584 ~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~ 658 (717)
.+..+........+.++.++..+-......+..|..+..+++.++.+++.++-.-+-.. .+|...|++. +..
T Consensus 224 ~l~~~~~~l~~~l~~l~~~i~~l~~~i~~~~~~L~~l~~~~~~~~~~l~~~~~~~~~~~~~~~Cp~C~~~~~~~---~~~ 300 (562)
T PHA02562 224 ELVEEAKTIKAEIEELTDELLNLVMDIEDPSAALNKLNTAAAKIKSKIEQFQKVIKMYEKGGVCPTCTQQISEG---PDR 300 (562)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCCcCCCc---HHH
Confidence 33333333333444444455444455555555666666666666666665554433221 2666667665 666
Q ss_pred HHHHHHHHHHHHHHhhhhccchh
Q 005043 659 VAFLKAVLDDTQKELHSTRGVLA 681 (717)
Q Consensus 659 ~~~~~~~~~~~~~~~~~~~~~~~ 681 (717)
++-|+.-+++.+++++.-...++
T Consensus 301 ~~~l~d~i~~l~~~l~~l~~~i~ 323 (562)
T PHA02562 301 ITKIKDKLKELQHSLEKLDTAID 323 (562)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 66666666666666666555555
No 187
>KOG0980 consensus Actin-binding protein SLA2/Huntingtin-interacting protein Hip1 [Cytoskeleton]
Probab=76.94 E-value=9.2 Score=45.76 Aligned_cols=57 Identities=30% Similarity=0.326 Sum_probs=30.4
Q ss_pred HHHHHHhcchhHHHHHHHhhHHHHHh---------------------hhhhHHhhHHHHHHHHHHHHHHHHHHHHHHh
Q 005043 576 AALIRKNGILEGQLAAALVNREAAEK---------------------NFSSVLKSRQEMEKKLADSLKEMELLKEKLA 632 (717)
Q Consensus 576 ~~~~~~~~~~~~~~~~~~~~~~~~e~---------------------~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 632 (717)
++|++||...-.||+.+..+.+.+|+ +..+..+-..+|+..|+.++.|.+.|++++.
T Consensus 441 ~~lL~K~~di~kQle~~~~s~~~~~~~~~~L~d~le~~~~~~~~~~~K~e~~~~~le~l~~El~~l~~e~~~lq~~~~ 518 (980)
T KOG0980|consen 441 ADLLRKYDDIQKQLESAEQSIDDVEEENTNLNDQLEELQRAAGRAETKTESQAKALESLRQELALLLIELEELQRTLS 518 (980)
T ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 34566666555555555555554444 4444444445555555555555555555543
No 188
>PF12718 Tropomyosin_1: Tropomyosin like; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].
Probab=76.80 E-value=29 Score=33.06 Aligned_cols=99 Identities=21% Similarity=0.249 Sum_probs=63.6
Q ss_pred HHHHHHHHHHhcchhHHHHHHHhhHHHHHhhhhhHHhhHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhcccccccccC
Q 005043 572 ESKMAALIRKNGILEGQLAAALVNREAAEKNFSSVLKSRQEMEKKLADSLKEMELLKEKLAGLELAQEEANSLSNIVHSD 651 (717)
Q Consensus 572 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 651 (717)
...--.++.+.+.+|+++..+-....+.|.-+.+..+-.+.+|..|..+...+..+|+++...+...-.+-+| .--
T Consensus 6 k~E~d~a~~r~e~~e~~~K~le~~~~~~E~EI~sL~~K~~~lE~eld~~~~~l~~~k~~lee~~~~~~~~E~l----~rr 81 (143)
T PF12718_consen 6 KLEADNAQDRAEELEAKVKQLEQENEQKEQEITSLQKKNQQLEEELDKLEEQLKEAKEKLEESEKRKSNAEQL----NRR 81 (143)
T ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhHHHH----Hhh
Confidence 3444567778888888888888888888888888777777777777777777777777666655332111111 111
Q ss_pred CccchhhHHHHHHHHHHHHHHhh
Q 005043 652 NVRLEHDVAFLKAVLDDTQKELH 674 (717)
Q Consensus 652 ~~~~~~~~~~~~~~~~~~~~~~~ 674 (717)
.--||+++.=...-|.+|..-|.
T Consensus 82 iq~LEeele~ae~~L~e~~ekl~ 104 (143)
T PF12718_consen 82 IQLLEEELEEAEKKLKETTEKLR 104 (143)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 22366666666666666665553
No 189
>PF05529 Bap31: B-cell receptor-associated protein 31-like ; InterPro: IPR008417 Bap31 is a polytopic integral protein of the endoplasmic reticulum membrane and a substrate of caspase-8. Bap31 is cleaved within its cytosolic domain, generating pro-apoptotic p20 Bap31 [].; GO: 0006886 intracellular protein transport, 0005783 endoplasmic reticulum, 0016021 integral to membrane
Probab=76.72 E-value=10 Score=37.76 Aligned_cols=56 Identities=23% Similarity=0.230 Sum_probs=38.2
Q ss_pred HHHHhcchhHHHHHHHhhHHHHHhhhhhHHhhHHH-HHHHHHHHHHHHHHHHHHHhh
Q 005043 578 LIRKNGILEGQLAAALVNREAAEKNFSSVLKSRQE-MEKKLADSLKEMELLKEKLAG 633 (717)
Q Consensus 578 ~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~-~~~~~~~~~~~~~~l~~~~~~ 633 (717)
.|.+--.+-.+|...-+..+++.|...+..+..++ .+++.+...+|++.||++|+.
T Consensus 116 ~I~r~~~li~~l~~~~~~~~~~~kq~~~~~~~~~~~~~~~~~~~~~ei~~lk~el~~ 172 (192)
T PF05529_consen 116 VIRRVHSLIKELIKLEEKLEALKKQAESASEAAEKLLKEENKKLSEEIEKLKKELEK 172 (192)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhhhHHHHHHHHHHHHH
Confidence 45555555556666666666666666666555555 566777888888888888877
No 190
>PF04156 IncA: IncA protein; InterPro: IPR007285 Chlamydia trachomatis is an obligate intracellular bacterium that develops within a parasitophorous vacuole termed an inclusion. The inclusion is nonfusogenic with lysosomes but intercepts lipids from a host cell exocytic pathway. Initiation of chlamydial development is concurrent with modification of the inclusion membrane by a set of C. trachomatis-encoded proteins collectively designated Incs. One of these Incs, IncA (Inclusion membrane protein A), is functionally associated with the homotypic fusion of inclusions [].
Probab=76.48 E-value=10 Score=37.60 Aligned_cols=79 Identities=22% Similarity=0.221 Sum_probs=47.4
Q ss_pred HHHHHHHHHHHHhcchhHHHHHHHhhHHHHHhhhhhHHhhHHHHHHHHHHHHHHHHHHH----HHHhhhhhhhhhhcccc
Q 005043 570 FYESKMAALIRKNGILEGQLAAALVNREAAEKNFSSVLKSRQEMEKKLADSLKEMELLK----EKLAGLELAQEEANSLS 645 (717)
Q Consensus 570 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~l~----~~~~~~~~~~~~~~~~~ 645 (717)
.++.++..+......++.+.......++..+.++.+.-++...+.+.+.+..++...++ ++...++..|++...|.
T Consensus 99 ~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~e~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 178 (191)
T PF04156_consen 99 QLQERIQELESELEKLKEDLQELRELLKSVEERLDSLDESIKELEKEIRELQKELQDSREEVQELRSQLERLQENLQQLE 178 (191)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45555666666666666666666677777777777777777777777777773333332 33333333445555544
Q ss_pred ccc
Q 005043 646 NIV 648 (717)
Q Consensus 646 ~~~ 648 (717)
+++
T Consensus 179 ~~~ 181 (191)
T PF04156_consen 179 EKI 181 (191)
T ss_pred HHH
Confidence 443
No 191
>COG4942 Membrane-bound metallopeptidase [Cell division and chromosome partitioning]
Probab=76.44 E-value=8.5 Score=42.81 Aligned_cols=81 Identities=17% Similarity=0.175 Sum_probs=42.9
Q ss_pred HHHHHHHHHHHHHHhcchhHHHHHHHhhHHHHHhhhhhHHhhHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhcccccc
Q 005043 568 YQFYESKMAALIRKNGILEGQLAAALVNREAAEKNFSSVLKSRQEMEKKLADSLKEMELLKEKLAGLELAQEEANSLSNI 647 (717)
Q Consensus 568 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 647 (717)
.+-.++.|+++-.+...++.||.+.-....+.+|+++......+.++.+. -+....|-+-|+++.+- =.-..+-..
T Consensus 61 ~~kL~~~lk~~e~~i~~~~~ql~~s~~~l~~~~~~I~~~~~~l~~l~~q~---r~qr~~La~~L~A~~r~-g~~p~~~ll 136 (420)
T COG4942 61 RAKLEKQLKSLETEIASLEAQLIETADDLKKLRKQIADLNARLNALEVQE---REQRRRLAEQLAALQRS-GRNPPPALL 136 (420)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHhc-cCCCCchhh
Confidence 34555666666666666666666666666666666666655555555544 22222344444444331 011234555
Q ss_pred cccCC
Q 005043 648 VHSDN 652 (717)
Q Consensus 648 ~~~~~ 652 (717)
||.+.
T Consensus 137 ~~~ed 141 (420)
T COG4942 137 VSPED 141 (420)
T ss_pred cChhh
Confidence 66555
No 192
>TIGR02168 SMC_prok_B chromosome segregation protein SMC, common bacterial type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle.
Probab=76.08 E-value=5.6 Score=50.52 Aligned_cols=6 Identities=0% Similarity=-0.014 Sum_probs=2.6
Q ss_pred EEEEcC
Q 005043 44 VAPSSN 49 (717)
Q Consensus 44 i~l~GG 49 (717)
+.++.|
T Consensus 25 ~~~i~G 30 (1179)
T TIGR02168 25 ITGIVG 30 (1179)
T ss_pred cEEEEC
Confidence 444444
No 193
>PF08614 ATG16: Autophagy protein 16 (ATG16); InterPro: IPR013923 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. This entry represents auotphagy protein 16 (Apg16), which is required for the function of the Apg12p-Apg5p conjugate.; PDB: 3A7O_D 3A7P_B.
Probab=75.83 E-value=3 Score=41.80 Aligned_cols=66 Identities=26% Similarity=0.276 Sum_probs=17.2
Q ss_pred HHHHHHHHHHHHhcchhHHHHHHHhhHHHHHhhhhhHHhhHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 005043 570 FYESKMAALIRKNGILEGQLAAALVNREAAEKNFSSVLKSRQEMEKKLADSLKEMELLKEKLAGLE 635 (717)
Q Consensus 570 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 635 (717)
....+++.+.+.++.+..||..+....++.++.++.-......++..++...++...|++.|...+
T Consensus 78 ~l~~ELael~r~~~el~~~L~~~~~~l~~l~~~~~~~~~~l~~l~~~~~~L~~~~~~l~~~l~ek~ 143 (194)
T PF08614_consen 78 KLQEELAELYRSKGELAQQLVELNDELQELEKELSEKERRLAELEAELAQLEEKIKDLEEELKEKN 143 (194)
T ss_dssp ------------------------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cccccccccccccccccccccccccccchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345678888999999999999999999999988877666666666666666555555554444443
No 194
>PF05546 She9_MDM33: She9 / Mdm33 family; InterPro: IPR008839 Members of this family are mitochondrial inner membrane proteins with a role in inner mitochondrial membrane organisation and biogenesis []. The yeast Mdm33 protein assembles into an oligomeric complex in the inner membrane where it performs homotypic protein-protein interactions. It has been suggested that Mdm33 plays a distinct role, possibly involved in fission of the mitochondrial inner membrane [].
Probab=75.68 E-value=25 Score=35.37 Aligned_cols=71 Identities=25% Similarity=0.284 Sum_probs=54.1
Q ss_pred HHHHHHHHHhcchhHHHHHHHhhHHHHHhhhhhHHhhHHHHHHHHHHHH-------------------------HHHHHH
Q 005043 573 SKMAALIRKNGILEGQLAAALVNREAAEKNFSSVLKSRQEMEKKLADSL-------------------------KEMELL 627 (717)
Q Consensus 573 ~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~-------------------------~~~~~l 627 (717)
..|..|......+|.+|+++-+..-+|-+....+...|-...+.+.+.| ++.+.+
T Consensus 32 s~Ie~LK~~i~~~E~~l~~~r~~~~~aK~~Y~~ai~~Rs~sQrEvn~LLqRK~sWs~~DleRFT~Lyr~dH~~e~~e~~a 111 (207)
T PF05546_consen 32 SEIEKLKKSIEELEDELEAARQEVREAKAAYDDAIQQRSSSQREVNELLQRKHSWSPADLERFTELYRNDHENEQAEEEA 111 (207)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCChHHHHHHHHHHHhhhhhHHHHHHH
Confidence 3577788888899999999998888888888888877776555554333 445568
Q ss_pred HHHHhhhhhhhhhhcc
Q 005043 628 KEKLAGLELAQEEANS 643 (717)
Q Consensus 628 ~~~~~~~~~~~~~~~~ 643 (717)
|+++..+|.++|+..+
T Consensus 112 k~~l~~aE~~~e~~~~ 127 (207)
T PF05546_consen 112 KEALEEAEEKVEEAFD 127 (207)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 8888888888877665
No 195
>PRK10115 protease 2; Provisional
Probab=75.19 E-value=2e+02 Score=34.79 Aligned_cols=254 Identities=7% Similarity=-0.001 Sum_probs=119.3
Q ss_pred CCEEEEEcccCCCCCcccEEEEEcCCCceEEccccccCCCCCCCCCCCcccceEEEEE-CCEEEEEeccCCCCCCceEEE
Q 005043 98 GNKMIVVGGESGNGLLDDVQVLNFDRFSWTAASSKLYLSPSSLPLKIPACRGHSLISW-GKKVLLVGGKTDSGSDRVSVW 176 (717)
Q Consensus 98 ~~~lyV~GG~~~~~~~~~v~~yd~~t~~W~~l~~~~~~~~~~~~~~~p~r~~hs~v~~-~~~Iyv~GG~~~~~~~~~~v~ 176 (717)
+++.++++-..+..-..++++.|+.++.. ++. ..+... ..++.. ++.-+++...........++|
T Consensus 137 dg~~la~~~d~~G~E~~~l~v~d~~tg~~--l~~-----------~i~~~~-~~~~w~~D~~~~~y~~~~~~~~~~~~v~ 202 (686)
T PRK10115 137 DNTIMALAEDFLSRRQYGIRFRNLETGNW--YPE-----------LLDNVE-PSFVWANDSWTFYYVRKHPVTLLPYQVW 202 (686)
T ss_pred CCCEEEEEecCCCcEEEEEEEEECCCCCC--CCc-----------cccCcc-eEEEEeeCCCEEEEEEecCCCCCCCEEE
Confidence 56666666443333445778888876632 111 112222 233333 444344443322212346899
Q ss_pred EEECCCCcE--EEeeecCCCCCCceeeEEEEE-CCEEEEEccccCCCCCcCcEEEEEc--CCCceEeccCCCCCCCCCcc
Q 005043 177 TFDTETECW--SVVEAKGDIPVARSGHTVVRA-SSVLILFGGEDGKRRKLNDLHMFDL--KSLTWLPLHCTGTGPSPRSN 251 (717)
Q Consensus 177 ~yD~~t~~W--~~l~~~g~~P~~R~~hs~~~~-~~~Lyv~GG~~~~~~~~~~v~~yD~--~t~~W~~l~~~g~~P~~R~~ 251 (717)
++++.|..- ..+-. -+........... +++..++..... ..+.++.|+. .+..|..+. ..+.. ..
T Consensus 203 ~h~lgt~~~~d~lv~~---e~~~~~~~~~~~s~d~~~l~i~~~~~---~~~~~~l~~~~~~~~~~~~~~---~~~~~-~~ 272 (686)
T PRK10115 203 RHTIGTPASQDELVYE---EKDDTFYVSLHKTTSKHYVVIHLASA---TTSEVLLLDAELADAEPFVFL---PRRKD-HE 272 (686)
T ss_pred EEECCCChhHCeEEEe---eCCCCEEEEEEEcCCCCEEEEEEECC---ccccEEEEECcCCCCCceEEE---ECCCC-CE
Confidence 999998832 22321 1112222222233 343333443332 2367888883 234443332 11111 11
Q ss_pred cEEEEECCcEEEEEcCCCCCCCCCeEEEEECC-CCcEEEeecCCCCCCCCcceEEEEECCEEEEEecCCCCCccCeEEEE
Q 005043 252 HVAALYDDKNLLIFGGSSKSKTLNDLYSLDFE-TMIWTRIKIRGFHPSPRAGCCGVLCGTKWYIAGGGSRKKRHAETLIF 330 (717)
Q Consensus 252 ~aa~~~~~~~lyV~GG~~~~~~~ndv~~yd~~-t~~W~~v~~~g~~P~~R~~~sav~~~~~IyV~GG~~~~~~~~dv~~y 330 (717)
.... ..+..+|+.--.+ .....+...++. ...|+.+-.. ...+.--.....++.+++..-..+. ..++++
T Consensus 273 ~~~~-~~~~~ly~~tn~~--~~~~~l~~~~~~~~~~~~~l~~~---~~~~~i~~~~~~~~~l~~~~~~~g~---~~l~~~ 343 (686)
T PRK10115 273 YSLD-HYQHRFYLRSNRH--GKNFGLYRTRVRDEQQWEELIPP---RENIMLEGFTLFTDWLVVEERQRGL---TSLRQI 343 (686)
T ss_pred EEEE-eCCCEEEEEEcCC--CCCceEEEecCCCcccCeEEECC---CCCCEEEEEEEECCEEEEEEEeCCE---EEEEEE
Confidence 2222 3334477765432 223347777776 5789888642 1122223344457777777643332 458888
Q ss_pred ECCCCcEEEeecCCCCCCCCCcceEEEEEEe--CCCcEEEEEcCCCCCCCCeEEEEEccCCccc
Q 005043 331 DILKGEWSVAITSPSSSVTSNKGFTLVLVQH--KEKDFLVAFGGIKKEPSNQVEVLSIEKNESS 392 (717)
Q Consensus 331 D~~t~~W~~l~~~p~~~~~~r~g~s~v~v~~--~~~~~I~v~GG~~~~~~n~v~vyd~~~~eW~ 392 (717)
|+.+.....+.. + .+... +.+.... .++..++.+.+. .....++.||+.+.+|.
T Consensus 344 ~~~~~~~~~l~~-~----~~~~~-~~~~~~~~~~~~~~~~~~ss~--~~P~~~y~~d~~~~~~~ 399 (686)
T PRK10115 344 NRKTREVIGIAF-D----DPAYV-TWIAYNPEPETSRLRYGYSSM--TTPDTLFELDMDTGERR 399 (686)
T ss_pred cCCCCceEEecC-C----CCceE-eeecccCCCCCceEEEEEecC--CCCCEEEEEECCCCcEE
Confidence 876665555431 0 11111 1111111 112233334443 23458888998877653
No 196
>PF06428 Sec2p: GDP/GTP exchange factor Sec2p; InterPro: IPR009449 In Saccharomyces cerevisiae, Sec2p is a GDP/GTP exchange factor for Sec4p, which is required for vesicular transport at the post-Golgi stage of yeast secretion []. It catalyzes the dissociation of GDP from SEC4 and also potently promoting binding of GTP. Activation of SEC4 by SEC2 is needed for the directed transport of vesicles to sites of exocytosis. Binds the Rab GTPase YPT32, but does not have exhange activity on YPT32 [, , ].; PDB: 2EQB_C 2E7S_K 2OCY_A.
Probab=74.71 E-value=8.3 Score=34.37 Aligned_cols=31 Identities=29% Similarity=0.473 Sum_probs=17.0
Q ss_pred HHHHHhhhhccchhhccccceeeEEEeehhhhhhhhhc
Q 005043 668 DTQKELHSTRGVLAGERARAFQLQVEVFHLKQRLQSLE 705 (717)
Q Consensus 668 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 705 (717)
.++++|+-+++.|.. ||-+|-+||..+++|+
T Consensus 55 ~le~~l~e~~~~l~~-------lq~qL~~LK~v~~~~~ 85 (100)
T PF06428_consen 55 QLEKQLKEKEALLES-------LQAQLKELKTVMESME 85 (100)
T ss_dssp HHHHCTTHHCHCCCH-------CTSSSSHHHHCTTT--
T ss_pred HHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHcc
Confidence 344555555555543 4456677777777766
No 197
>COG4257 Vgb Streptogramin lyase [Defense mechanisms]
Probab=74.29 E-value=1.2e+02 Score=32.08 Aligned_cols=243 Identities=11% Similarity=0.026 Sum_probs=123.3
Q ss_pred cEEEEEcCCCceEEccccccCCCCCCCCCCCcccceEEEEE-CCEEEEEeccCCCCCCceEEEEEECCCCcEEEeeecCC
Q 005043 115 DVQVLNFDRFSWTAASSKLYLSPSSLPLKIPACRGHSLISW-GKKVLLVGGKTDSGSDRVSVWTFDTETECWSVVEAKGD 193 (717)
Q Consensus 115 ~v~~yd~~t~~W~~l~~~~~~~~~~~~~~~p~r~~hs~v~~-~~~Iyv~GG~~~~~~~~~~v~~yD~~t~~W~~l~~~g~ 193 (717)
.+=.+||.+.+-...+-. . ...-|.+++- ++..++.-+. .-+-++|+++..-+..+...+
T Consensus 84 aiGhLdP~tGev~~ypLg-----------~-Ga~Phgiv~gpdg~~Witd~~-------~aI~R~dpkt~evt~f~lp~~ 144 (353)
T COG4257 84 AIGHLDPATGEVETYPLG-----------S-GASPHGIVVGPDGSAWITDTG-------LAIGRLDPKTLEVTRFPLPLE 144 (353)
T ss_pred cceecCCCCCceEEEecC-----------C-CCCCceEEECCCCCeeEecCc-------ceeEEecCcccceEEeecccc
Confidence 345678888877666531 1 1223444443 4556665322 158899999988887764333
Q ss_pred CCCCceeeEEEEE-CCEEEEEccccCCCCCcCcEEEEEcCCCceEeccCCCCCCCCCcccEEEEECCcEEEEEcCCCCCC
Q 005043 194 IPVARSGHTVVRA-SSVLILFGGEDGKRRKLNDLHMFDLKSLTWLPLHCTGTGPSPRSNHVAALYDDKNLLIFGGSSKSK 272 (717)
Q Consensus 194 ~P~~R~~hs~~~~-~~~Lyv~GG~~~~~~~~~~v~~yD~~t~~W~~l~~~g~~P~~R~~~aa~~~~~~~lyV~GG~~~~~ 272 (717)
++..-.. +++.. .+.||..|-....+ ++||.++.-+..+ .|..-.-+.+|+-.+..+|+..=..
T Consensus 145 ~a~~nle-t~vfD~~G~lWFt~q~G~yG-------rLdPa~~~i~vfp----aPqG~gpyGi~atpdGsvwyaslag--- 209 (353)
T COG4257 145 HADANLE-TAVFDPWGNLWFTGQIGAYG-------RLDPARNVISVFP----APQGGGPYGICATPDGSVWYASLAG--- 209 (353)
T ss_pred cCCCccc-ceeeCCCccEEEeeccccce-------ecCcccCceeeec----cCCCCCCcceEECCCCcEEEEeccc---
Confidence 3333222 22222 36788776432221 5677666544332 2222222334444444366642222
Q ss_pred CCCeEEEEECCCCcEEEeecCCCCCCC-CcceEEEEE--CCEEEEEecCCCCCccCeEEEEECCCCcEEEeecCCCCCCC
Q 005043 273 TLNDLYSLDFETMIWTRIKIRGFHPSP-RAGCCGVLC--GTKWYIAGGGSRKKRHAETLIFDILKGEWSVAITSPSSSVT 349 (717)
Q Consensus 273 ~~ndv~~yd~~t~~W~~v~~~g~~P~~-R~~~sav~~--~~~IyV~GG~~~~~~~~dv~~yD~~t~~W~~l~~~p~~~~~ 349 (717)
|-|-+.|+.+..=..++. |.+ ..+.--+.. -+++.+.-- ....+++||+.+..|...+. |..
T Consensus 210 --naiaridp~~~~aev~p~----P~~~~~gsRriwsdpig~~wittw-----g~g~l~rfdPs~~sW~eypL-Pgs--- 274 (353)
T COG4257 210 --NAIARIDPFAGHAEVVPQ----PNALKAGSRRIWSDPIGRAWITTW-----GTGSLHRFDPSVTSWIEYPL-PGS--- 274 (353)
T ss_pred --cceEEcccccCCcceecC----CCcccccccccccCccCcEEEecc-----CCceeeEeCcccccceeeeC-CCC---
Confidence 347788887775555543 222 111111111 356666521 12458999999999998752 322
Q ss_pred CCcceEEEEEEeCCCcEEEEEcCCCCCCCCeEEEEEccCCcccCccccccCCCCCcEEEEeeCCCCC
Q 005043 350 SNKGFTLVLVQHKEKDFLVAFGGIKKEPSNQVEVLSIEKNESSMGRRSTPNAKGPGQLLFEKRSSST 416 (717)
Q Consensus 350 ~r~g~s~v~v~~~~~~~I~v~GG~~~~~~n~v~vyd~~~~eW~~~w~~~~~~~~p~~~~fgG~~~~~ 416 (717)
.-..+++-+-. .+.+++- .-..+-+..||+++..-... - .....+..+.++|.....
T Consensus 275 ~arpys~rVD~---~grVW~s----ea~agai~rfdpeta~ftv~--p-~pr~n~gn~ql~gr~ge~ 331 (353)
T COG4257 275 KARPYSMRVDR---HGRVWLS----EADAGAIGRFDPETARFTVL--P-IPRPNSGNIQLDGRPGEL 331 (353)
T ss_pred CCCcceeeecc---CCcEEee----ccccCceeecCcccceEEEe--c-CCCCCCCceeccCCCCce
Confidence 22234444332 3444431 11245678888888774331 0 111333445566665543
No 198
>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]
Probab=74.27 E-value=18 Score=38.93 Aligned_cols=182 Identities=13% Similarity=0.173 Sum_probs=96.3
Q ss_pred ECCEEEEEeccCCCCCCceEEEEEECCCCcEEEeeecCCCCCCceeeEEEEE-----CCEEEEEccccCCCCCcCcEEEE
Q 005043 155 WGKKVLLVGGKTDSGSDRVSVWTFDTETECWSVVEAKGDIPVARSGHTVVRA-----SSVLILFGGEDGKRRKLNDLHMF 229 (717)
Q Consensus 155 ~~~~Iyv~GG~~~~~~~~~~v~~yD~~t~~W~~l~~~g~~P~~R~~hs~~~~-----~~~Lyv~GG~~~~~~~~~~v~~y 229 (717)
++++++|.|..+ .+|-++|..|+. +-....+|+-+++ +|.++-. .. -..+-++
T Consensus 245 yd~rviisGSSD------sTvrvWDv~tge---------~l~tlihHceaVLhlrf~ng~mvtc-Sk------DrsiaVW 302 (499)
T KOG0281|consen 245 YDERVIVSGSSD------STVRVWDVNTGE---------PLNTLIHHCEAVLHLRFSNGYMVTC-SK------DRSIAVW 302 (499)
T ss_pred ccceEEEecCCC------ceEEEEeccCCc---------hhhHHhhhcceeEEEEEeCCEEEEe-cC------CceeEEE
Confidence 478877776543 357788877653 2333455655443 2332222 11 1234444
Q ss_pred EcCCCceEeccCCCCCCCCCcccEEEEECCcEEEEEcCCCCCCCCCeEEEEECCCCcEEEeecCCCCCCCCcceEEEEEC
Q 005043 230 DLKSLTWLPLHCTGTGPSPRSNHVAALYDDKNLLIFGGSSKSKTLNDLYSLDFETMIWTRIKIRGFHPSPRAGCCGVLCG 309 (717)
Q Consensus 230 D~~t~~W~~l~~~g~~P~~R~~~aa~~~~~~~lyV~GG~~~~~~~ndv~~yd~~t~~W~~v~~~g~~P~~R~~~sav~~~ 309 (717)
|+.+-+ .++..--+-.-|..--.+-+++++|+-..|- ..+-.|+..|....+.- ..-+.+-++....
T Consensus 303 dm~sps--~it~rrVLvGHrAaVNvVdfd~kyIVsASgD------RTikvW~~st~efvRtl-----~gHkRGIAClQYr 369 (499)
T KOG0281|consen 303 DMASPT--DITLRRVLVGHRAAVNVVDFDDKYIVSASGD------RTIKVWSTSTCEFVRTL-----NGHKRGIACLQYR 369 (499)
T ss_pred eccCch--HHHHHHHHhhhhhheeeeccccceEEEecCC------ceEEEEeccceeeehhh-----hcccccceehhcc
Confidence 543322 1110001111222223344677743333332 24778888777665542 2345566778889
Q ss_pred CEEEEEecCCCCCccCeEEEEECCCCcEEEeecCCCCCCCCCcceEEEEEEeCCCcEEEEEcCCCCCCCCeEEEEEccCC
Q 005043 310 TKWYIAGGGSRKKRHAETLIFDILKGEWSVAITSPSSSVTSNKGFTLVLVQHKEKDFLVAFGGIKKEPSNQVEVLSIEKN 389 (717)
Q Consensus 310 ~~IyV~GG~~~~~~~~dv~~yD~~t~~W~~l~~~p~~~~~~r~g~s~v~v~~~~~~~I~v~GG~~~~~~n~v~vyd~~~~ 389 (717)
++++|.|..+ +.+..+|+....--.+....... ..++.+ +++=+|-|||+|. +-++|..+.
T Consensus 370 ~rlvVSGSSD-----ntIRlwdi~~G~cLRvLeGHEeL------vRciRF----d~krIVSGaYDGk----ikvWdl~aa 430 (499)
T KOG0281|consen 370 DRLVVSGSSD-----NTIRLWDIECGACLRVLEGHEEL------VRCIRF----DNKRIVSGAYDGK----IKVWDLQAA 430 (499)
T ss_pred CeEEEecCCC-----ceEEEEeccccHHHHHHhchHHh------hhheee----cCceeeeccccce----EEEEecccc
Confidence 9999998765 34888898877654433211111 124445 4556789999775 556665554
Q ss_pred c
Q 005043 390 E 390 (717)
Q Consensus 390 e 390 (717)
.
T Consensus 431 l 431 (499)
T KOG0281|consen 431 L 431 (499)
T ss_pred c
Confidence 4
No 199
>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes. ; GO: 0016021 integral to membrane
Probab=74.16 E-value=13 Score=44.71 Aligned_cols=13 Identities=31% Similarity=0.434 Sum_probs=9.2
Q ss_pred Eeehhhhhhhhhc
Q 005043 693 EVFHLKQRLQSLE 705 (717)
Q Consensus 693 ~~~~~~~~~~~~~ 705 (717)
||.+||+||-.+.
T Consensus 644 ei~~lk~ki~~~~ 656 (697)
T PF09726_consen 644 EIEELKAKIAQLL 656 (697)
T ss_pred HHHHHHHHHHHHH
Confidence 6777888776554
No 200
>KOG0977 consensus Nuclear envelope protein lamin, intermediate filament superfamily [Cell cycle control, cell division, chromosome partitioning; Nuclear structure]
Probab=73.76 E-value=14 Score=42.67 Aligned_cols=112 Identities=20% Similarity=0.226 Sum_probs=54.5
Q ss_pred HHHHHHHHHHHHhcchhHHHHHHHhhHHHHHhhhh--------------hHHhhHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 005043 570 FYESKMAALIRKNGILEGQLAAALVNREAAEKNFS--------------SVLKSRQEMEKKLADSLKEMELLKEKLAGLE 635 (717)
Q Consensus 570 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~--------------~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 635 (717)
-++.+|..|--....|..+++.++..+..+++++- .+..-+..||..+.++.+|..-|.+-|+.+.
T Consensus 110 ~~e~ei~kl~~e~~elr~~~~~~~k~~~~~re~~~~~~~~l~~leAe~~~~krr~~~le~e~~~Lk~en~rl~~~l~~~r 189 (546)
T KOG0977|consen 110 KLEIEITKLREELKELRKKLEKAEKERRGAREKLDDYLSRLSELEAEINTLKRRIKALEDELKRLKAENSRLREELARAR 189 (546)
T ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHhhhHHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHH
Confidence 34555555555555555555555555555555333 3334444455555555555555555555544
Q ss_pred hhhhhhcccccccccCCccchhhHHHHHHHHHHHHHHhhhhccchhhcc
Q 005043 636 LAQEEANSLSNIVHSDNVRLEHDVAFLKAVLDDTQKELHSTRGVLAGER 684 (717)
Q Consensus 636 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 684 (717)
..-++.-.|-+=-+.-.--|.+|++|++-+=+ .||..+|...+.+.
T Consensus 190 ~~ld~Etllr~d~~n~~q~Lleel~f~~~~h~---~eI~e~~~~~~rd~ 235 (546)
T KOG0977|consen 190 KQLDDETLLRVDLQNRVQTLLEELAFLKRIHK---QEIEEERRKARRDT 235 (546)
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHhccH---HHHHHHHHHHhhcc
Confidence 32222222222222333446677777764433 34444444444443
No 201
>TIGR03185 DNA_S_dndD DNA sulfur modification protein DndD. This model describes the DndB protein encoded by an operon associated with a sulfur-containing modification to DNA. The operon is sporadically distributed in bacteria, much like some restriction enzyme operons. DndD is described as a putative ATPase. The small number of examples known so far include species from among the Firmicutes, Actinomycetes, Proteobacteria, and Cyanobacteria.
Probab=73.68 E-value=14 Score=44.14 Aligned_cols=66 Identities=18% Similarity=0.260 Sum_probs=45.1
Q ss_pred HHHHHHHHHHHHHhcchhHHHHHHHhhHHHHHhhhhh-----------HHhhHHHHHHHHHHHHHHHHHHHHHHhhh
Q 005043 569 QFYESKMAALIRKNGILEGQLAAALVNREAAEKNFSS-----------VLKSRQEMEKKLADSLKEMELLKEKLAGL 634 (717)
Q Consensus 569 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~-----------~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 634 (717)
...+.++..+..+-+.++.++++..+.++++++++.. ..+.|+++|+++....++.+..+.++..+
T Consensus 212 ~~le~el~~l~~~~e~l~~~i~~l~~ele~a~~~l~~l~~~~~~~GG~~~~~r~~Le~ei~~le~e~~e~~~~l~~l 288 (650)
T TIGR03185 212 EALEAELKEQSEKYEDLAQEIAHLRNELEEAQRSLESLEKKFRSEGGDLFEEREQLERQLKEIEAARKANRAQLREL 288 (650)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566677777777777777777777777777766653 34567788888877777777766666533
No 202
>PRK13169 DNA replication intiation control protein YabA; Reviewed
Probab=73.53 E-value=6.8 Score=35.52 Aligned_cols=52 Identities=27% Similarity=0.406 Sum_probs=40.2
Q ss_pred hhHHhhHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhcccccccccCCccchhhHHHHHHHHHHH
Q 005043 604 SSVLKSRQEMEKKLADSLKEMELLKEKLAGLELAQEEANSLSNIVHSDNVRLEHDVAFLKAVLDDT 669 (717)
Q Consensus 604 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 669 (717)
..++..-.+||.++..++++++.||..++.+. -+|.+|.-|..=|+..|++.
T Consensus 4 ~elfd~l~~le~~l~~l~~el~~LK~~~~el~--------------EEN~~L~iEN~~Lr~~l~~~ 55 (110)
T PRK13169 4 KEIFDALDDLEQNLGVLLKELGALKKQLAELL--------------EENTALRLENDKLRERLEEL 55 (110)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHHHh
Confidence 35667777888888888888888888887765 24677888888888888765
No 203
>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes. ; GO: 0016021 integral to membrane
Probab=73.39 E-value=19 Score=43.20 Aligned_cols=29 Identities=28% Similarity=0.274 Sum_probs=15.3
Q ss_pred HHHHHHHHHHHHhcchhHHHHHHHhhHHH
Q 005043 570 FYESKMAALIRKNGILEGQLAAALVNREA 598 (717)
Q Consensus 570 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 598 (717)
.-|+|++++.+....||.||.+--..|-+
T Consensus 492 ~LEkrL~eE~~~R~~lEkQL~eErk~r~~ 520 (697)
T PF09726_consen 492 QLEKRLAEERRQRASLEKQLQEERKARKE 520 (697)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Confidence 44555555555555555555555544333
No 204
>KOG0250 consensus DNA repair protein RAD18 (SMC family protein) [Replication, recombination and repair]
Probab=73.32 E-value=14 Score=45.45 Aligned_cols=109 Identities=21% Similarity=0.210 Sum_probs=80.8
Q ss_pred chHHHHHHHHHHHHHHHhcchhHHHHHHHhhHHHHHhhhhhHHhhHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhccc
Q 005043 565 SSIYQFYESKMAALIRKNGILEGQLAAALVNREAAEKNFSSVLKSRQEMEKKLADSLKEMELLKEKLAGLELAQEEANSL 644 (717)
Q Consensus 565 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 644 (717)
.+-+++.+..+..+-..--.|+.|+.++-...+..++.++.+-+.+.+.++++.....||..||-- | |..|.+.-.|
T Consensus 660 d~~ie~le~e~~~l~~~~~~l~~~~~~~e~~l~e~~~~~~~l~~~~~q~~~~~~~~~~em~el~n~-~--e~~~~~~~~~ 736 (1074)
T KOG0250|consen 660 DDEIEDLEREASRLQKEILELENQRREAEKNLEELEKKLRELSEHIEQIKRRIRKKRAEMTELKNT-A--EEKQVDISKL 736 (1074)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh-h--hhhhcchhhh
Confidence 344455666666666666678888888888888888888888888999999999999999888875 1 4444333221
Q ss_pred ccccccCCccchhhHHHHHHHHHHHHHHhhhhc
Q 005043 645 SNIVHSDNVRLEHDVAFLKAVLDDTQKELHSTR 677 (717)
Q Consensus 645 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 677 (717)
|--+.+..-.+++++=.-|-++++|.|++.++
T Consensus 737 -~~l~~ei~~~~~eIe~~~~~~e~l~~e~e~~~ 768 (1074)
T KOG0250|consen 737 -EDLAREIKKKEKEIEEKEAPLEKLKEELEHIE 768 (1074)
T ss_pred -HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 23455666778999999999999999998753
No 205
>KOG0266 consensus WD40 repeat-containing protein [General function prediction only]
Probab=73.32 E-value=1.7e+02 Score=33.25 Aligned_cols=105 Identities=16% Similarity=0.233 Sum_probs=55.7
Q ss_pred CCEEEEEeccCCCCCCceEEEEEECCCC-c-EEEeeecCCCCCCceeeEEEE-ECCEEEEEccccCCCCCcCcEEEEEcC
Q 005043 156 GKKVLLVGGKTDSGSDRVSVWTFDTETE-C-WSVVEAKGDIPVARSGHTVVR-ASSVLILFGGEDGKRRKLNDLHMFDLK 232 (717)
Q Consensus 156 ~~~Iyv~GG~~~~~~~~~~v~~yD~~t~-~-W~~l~~~g~~P~~R~~hs~~~-~~~~Lyv~GG~~~~~~~~~~v~~yD~~ 232 (717)
+++ |+..|..+ ..+.+||...+ . -..+. ..+... +++++ ..+.+++.|+.+.. |.++|+.
T Consensus 214 d~~-~l~s~s~D-----~tiriwd~~~~~~~~~~l~---gH~~~v--~~~~f~p~g~~i~Sgs~D~t------vriWd~~ 276 (456)
T KOG0266|consen 214 DGS-YLLSGSDD-----KTLRIWDLKDDGRNLKTLK---GHSTYV--TSVAFSPDGNLLVSGSDDGT------VRIWDVR 276 (456)
T ss_pred CCc-EEEEecCC-----ceEEEeeccCCCeEEEEec---CCCCce--EEEEecCCCCEEEEecCCCc------EEEEecc
Confidence 344 55555432 25888888444 2 22222 133333 33433 34589999886643 8888998
Q ss_pred CCceEeccCCCCCCCCCcccEEEEE-CCcEEEEEcCCCCCCCCCeEEEEECCCCcE
Q 005043 233 SLTWLPLHCTGTGPSPRSNHVAALY-DDKNLLIFGGSSKSKTLNDLYSLDFETMIW 287 (717)
Q Consensus 233 t~~W~~l~~~g~~P~~R~~~aa~~~-~~~~lyV~GG~~~~~~~ndv~~yd~~t~~W 287 (717)
+.+-... ++.-...-+++.+ .+..+++.+.+++ .+.+||..++.-
T Consensus 277 ~~~~~~~-----l~~hs~~is~~~f~~d~~~l~s~s~d~-----~i~vwd~~~~~~ 322 (456)
T KOG0266|consen 277 TGECVRK-----LKGHSDGISGLAFSPDGNLLVSASYDG-----TIRVWDLETGSK 322 (456)
T ss_pred CCeEEEe-----eeccCCceEEEEECCCCCEEEEcCCCc-----cEEEEECCCCce
Confidence 8543332 1111112222222 2333667665543 489999887764
No 206
>COG4447 Uncharacterized protein related to plant photosystem II stability/assembly factor [General function prediction only]
Probab=73.28 E-value=89 Score=33.11 Aligned_cols=142 Identities=13% Similarity=0.154 Sum_probs=86.8
Q ss_pred ceEEEEECCEEEEEeccCCCCCCceEEEEEECCCCcEEEeeecCCCCCCceeeEEE-EECCEEEEEccccCCCCCcCcEE
Q 005043 149 GHSLISWGKKVLLVGGKTDSGSDRVSVWTFDTETECWSVVEAKGDIPVARSGHTVV-RASSVLILFGGEDGKRRKLNDLH 227 (717)
Q Consensus 149 ~hs~v~~~~~Iyv~GG~~~~~~~~~~v~~yD~~t~~W~~l~~~g~~P~~R~~hs~~-~~~~~Lyv~GG~~~~~~~~~~v~ 227 (717)
.-+.+..+++.+++||.. .+..-|-...+|.+.. .+..|..+..+ +.+.+=++.| ....++
T Consensus 47 ~ia~~~~g~~gwlVg~rg-------tiletdd~g~tw~qal----~~~gr~~f~sv~f~~~egw~vG-------e~sqll 108 (339)
T COG4447 47 DIAFTESGSHGWLVGGRG-------TILETDDGGITWAQAL----DFLGRHAFHSVSFLGMEGWIVG-------EPSQLL 108 (339)
T ss_pred ceeEeecCcceEEEcCcc-------eEEEecCCcccchhhh----chhhhhheeeeeeecccccccC-------CcceEE
Confidence 445566689999999974 4666677788998875 45545554444 4454566664 124456
Q ss_pred EEEcCCCceEeccCCCCCCCCCcccEEEEECCcEEEEEcCCCCCCCCCeEEEEECCCCcEEEeecCCCC-CCCCcceEEE
Q 005043 228 MFDLKSLTWLPLHCTGTGPSPRSNHVAALYDDKNLLIFGGSSKSKTLNDLYSLDFETMIWTRIKIRGFH-PSPRAGCCGV 306 (717)
Q Consensus 228 ~yD~~t~~W~~l~~~g~~P~~R~~~aa~~~~~~~lyV~GG~~~~~~~ndv~~yd~~t~~W~~v~~~g~~-P~~R~~~sav 306 (717)
.-+-...+|.+++....+|. .-.+...+++++-+++|-+. .|+.-+-....|+.+...... ..+|. -+.
T Consensus 109 ~T~DgGqsWARi~~~e~~eg--~~~sI~f~d~q~g~m~gd~G------ail~T~DgGk~Wk~l~e~~v~~~~~n~--ia~ 178 (339)
T COG4447 109 HTTDGGQSWARIPLSEKLEG--FPDSITFLDDQRGEMLGDQG------AILKTTDGGKNWKALVEKAVGLAVPNE--IAR 178 (339)
T ss_pred EecCCCcchhhchhhcCCCC--CcceeEEecchhhhhhcccc------eEEEecCCcccHhHhcccccchhhhhh--hhh
Confidence 66666788999865433333 23456667777677777543 466666677889998764221 02222 223
Q ss_pred EECCEEEEEecC
Q 005043 307 LCGTKWYIAGGG 318 (717)
Q Consensus 307 ~~~~~IyV~GG~ 318 (717)
..+|..+++|-.
T Consensus 179 s~dng~vaVg~r 190 (339)
T COG4447 179 SADNGYVAVGAR 190 (339)
T ss_pred hccCCeEEEecC
Confidence 346666666643
No 207
>KOG0996 consensus Structural maintenance of chromosome protein 4 (chromosome condensation complex Condensin, subunit C) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=73.23 E-value=11 Score=46.71 Aligned_cols=106 Identities=24% Similarity=0.292 Sum_probs=77.3
Q ss_pred HHHHHHHHHHHHHHhcchhHHHHHHHhhHHHHHhhhhhHHhhHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhcccccc
Q 005043 568 YQFYESKMAALIRKNGILEGQLAAALVNREAAEKNFSSVLKSRQEMEKKLADSLKEMELLKEKLAGLELAQEEANSLSNI 647 (717)
Q Consensus 568 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 647 (717)
.|..+.|+..+..+-+.|++.++-..+..+-+..+++.+.+.-+++|++..++.+|.+.|.|.+.+++.+-.| .-+++
T Consensus 902 ~q~qk~kv~~~~~~~~~l~~~i~k~~~~i~~s~~~i~k~q~~l~~le~~~~~~e~e~~~L~e~~~~~~~k~~E--~~~~~ 979 (1293)
T KOG0996|consen 902 VQAQKDKVEKINEQLDKLEADIAKLTVAIKTSDRNIAKAQKKLSELEREIEDTEKELDDLTEELKGLEEKAAE--LEKEY 979 (1293)
T ss_pred hHHhHHHHHHHHHHHHHHHHHHHHhHHHHhcCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHH--HHHHH
Confidence 4678888999999999999999988888888888888888888888888888888888888888888776654 23344
Q ss_pred cccCCccchhh--HHHHHHHHHHHHHHhhh
Q 005043 648 VHSDNVRLEHD--VAFLKAVLDDTQKELHS 675 (717)
Q Consensus 648 ~~~~~~~~~~~--~~~~~~~~~~~~~~~~~ 675 (717)
=-+.|..-|++ ..=||--+++.+|.++.
T Consensus 980 ~e~~~~~~E~k~~~~~~k~~~e~i~k~~~~ 1009 (1293)
T KOG0996|consen 980 KEAEESLKEIKKELRDLKSELENIKKSENE 1009 (1293)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44445555543 23334444555554443
No 208
>PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A.
Probab=72.67 E-value=1.6e+02 Score=32.74 Aligned_cols=213 Identities=16% Similarity=0.082 Sum_probs=89.3
Q ss_pred CCEEEEEcccCCCCCcccEEEEEcCCCceEEccccccCCCCCCCCCCCcccceEEEEECCEEEEE-eccCCCCCCceEEE
Q 005043 98 GNKMIVVGGESGNGLLDDVQVLNFDRFSWTAASSKLYLSPSSLPLKIPACRGHSLISWGKKVLLV-GGKTDSGSDRVSVW 176 (717)
Q Consensus 98 ~~~lyV~GG~~~~~~~~~v~~yd~~t~~W~~l~~~~~~~~~~~~~~~p~r~~hs~v~~~~~Iyv~-GG~~~~~~~~~~v~ 176 (717)
+++-+||+|..+ ....+|.+|+.+.+-.+++.. +.....+...+.-++.+|.+ .|. .++
T Consensus 46 dG~kllF~s~~d--g~~nly~lDL~t~~i~QLTdg----------~g~~~~g~~~s~~~~~~~Yv~~~~--------~l~ 105 (386)
T PF14583_consen 46 DGRKLLFASDFD--GNRNLYLLDLATGEITQLTDG----------PGDNTFGGFLSPDDRALYYVKNGR--------SLR 105 (386)
T ss_dssp TS-EEEEEE-TT--SS-EEEEEETTT-EEEE---S----------S-B-TTT-EE-TTSSEEEEEETTT--------EEE
T ss_pred CCCEEEEEeccC--CCcceEEEEcccCEEEECccC----------CCCCccceEEecCCCeEEEEECCC--------eEE
Confidence 455556665422 235789999999999999872 22222233333335666544 332 689
Q ss_pred EEECCCCcEEEeeecCCCCCCceeeEEEEEC-CEEEEEccc----cCC-------------CCCcCcEEEEEcCCCceEe
Q 005043 177 TFDTETECWSVVEAKGDIPVARSGHTVVRAS-SVLILFGGE----DGK-------------RRKLNDLHMFDLKSLTWLP 238 (717)
Q Consensus 177 ~yD~~t~~W~~l~~~g~~P~~R~~hs~~~~~-~~Lyv~GG~----~~~-------------~~~~~~v~~yD~~t~~W~~ 238 (717)
..|+.|.+=+.+-. .|..-.+....+.+ +.-.++|=. +.. ......+...|+.++..+.
T Consensus 106 ~vdL~T~e~~~vy~---~p~~~~g~gt~v~n~d~t~~~g~e~~~~d~~~l~~~~~f~e~~~a~p~~~i~~idl~tG~~~~ 182 (386)
T PF14583_consen 106 RVDLDTLEERVVYE---VPDDWKGYGTWVANSDCTKLVGIEISREDWKPLTKWKGFREFYEARPHCRIFTIDLKTGERKV 182 (386)
T ss_dssp EEETTT--EEEEEE-----TTEEEEEEEEE-TTSSEEEEEEEEGGG-----SHHHHHHHHHC---EEEEEEETTT--EEE
T ss_pred EEECCcCcEEEEEE---CCcccccccceeeCCCccEEEEEEEeehhccCccccHHHHHHHhhCCCceEEEEECCCCceeE
Confidence 99999887655552 45544443333322 222222211 100 1234568888888888776
Q ss_pred ccCCCCCCCCCcccEEEEECCcEEEEE---cCCCCCCCCCeEEEEECCCCcEEEeecCCCCCCCCcceEEEEECCEEEEE
Q 005043 239 LHCTGTGPSPRSNHVAALYDDKNLLIF---GGSSKSKTLNDLYSLDFETMIWTRIKIRGFHPSPRAGCCGVLCGTKWYIA 315 (717)
Q Consensus 239 l~~~g~~P~~R~~~aa~~~~~~~lyV~---GG~~~~~~~ndv~~yd~~t~~W~~v~~~g~~P~~R~~~sav~~~~~IyV~ 315 (717)
+-.. ..-.+|.-..-.+..+++| |... ..-..||..+.+......+... .+.-..+|---..+|..+.+
T Consensus 183 v~~~----~~wlgH~~fsP~dp~li~fCHEGpw~--~Vd~RiW~i~~dg~~~~~v~~~--~~~e~~gHEfw~~DG~~i~y 254 (386)
T PF14583_consen 183 VFED----TDWLGHVQFSPTDPTLIMFCHEGPWD--LVDQRIWTINTDGSNVKKVHRR--MEGESVGHEFWVPDGSTIWY 254 (386)
T ss_dssp EEEE----SS-EEEEEEETTEEEEEEEEE-S-TT--TSS-SEEEEETTS---EESS-----TTEEEEEEEE-TTSS-EEE
T ss_pred EEec----CccccCcccCCCCCCEEEEeccCCcc--eeceEEEEEEcCCCcceeeecC--CCCcccccccccCCCCEEEE
Confidence 6311 0111232222112224444 3322 2223799999988777777543 23333333333335443333
Q ss_pred ecCCCCCccCeEEEEECCCCcEEEee
Q 005043 316 GGGSRKKRHAETLIFDILKGEWSVAI 341 (717)
Q Consensus 316 GG~~~~~~~~dv~~yD~~t~~W~~l~ 341 (717)
-++.....-.-+..||+.+..=+.+.
T Consensus 255 ~~~~~~~~~~~i~~~d~~t~~~~~~~ 280 (386)
T PF14583_consen 255 DSYTPGGQDFWIAGYDPDTGERRRLM 280 (386)
T ss_dssp EEEETTT--EEEEEE-TTT--EEEEE
T ss_pred EeecCCCCceEEEeeCCCCCCceEEE
Confidence 33322222234778899886533343
No 209
>TIGR03007 pepcterm_ChnLen polysaccharide chain length determinant protein, PEP-CTERM locus subfamily. Members of this protein family belong to the family of polysaccharide chain length determinant proteins (pfam02706). All are found in species that encode the PEP-CTERM/exosortase system predicted to act in protein sorting in a number of Gram-negative bacteria, and are found near the epsH homolog that is the putative exosortase gene.
Probab=72.65 E-value=18 Score=41.66 Aligned_cols=108 Identities=19% Similarity=0.142 Sum_probs=63.2
Q ss_pred HHHHHHHHHHHHhcchhHHHHHHHhhHHHHHhhhhhH--------------HhhHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 005043 570 FYESKMAALIRKNGILEGQLAAALVNREAAEKNFSSV--------------LKSRQEMEKKLADSLKEMELLKEKLAGLE 635 (717)
Q Consensus 570 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~--------------~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 635 (717)
.-+.+++.+..+++-=--++-+..+..+++++.+... -..+|++..+++++..+.+.|+.+++.++
T Consensus 258 ~l~~~l~~l~~~y~~~hP~v~~l~~qi~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~l~~~~~~l~ 337 (498)
T TIGR03007 258 ALEKQLDALRLRYTDKHPDVIATKREIAQLEEQKEEEGSAKNGGPERGEIANPVYQQLQIELAEAEAEIASLEARVAELT 337 (498)
T ss_pred HHHHHHHHHHHHhcccChHHHHHHHHHHHHHHHHHhhccccccCcccccccChHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3466666776666633333333333334444433332 23367787888877777777777776665
Q ss_pred hhhhhhccccc---ccccCCccchhhHHHHHHHHHHHHHHhhhhc
Q 005043 636 LAQEEANSLSN---IVHSDNVRLEHDVAFLKAVLDDTQKELHSTR 677 (717)
Q Consensus 636 ~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 677 (717)
...++...-.. -.-.+-.+|++|+...+...+.+.+-+..+|
T Consensus 338 ~~~~~~~~~~~~~~~~~~el~~L~Re~~~~~~~Y~~l~~r~eea~ 382 (498)
T TIGR03007 338 ARIERLESLLRTIPEVEAELTQLNRDYEVNKSNYEQLLTRRESAE 382 (498)
T ss_pred HHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44333222111 1123445789999999999998888776655
No 210
>COG1566 EmrA Multidrug resistance efflux pump [Defense mechanisms]
Probab=72.62 E-value=16 Score=40.16 Aligned_cols=109 Identities=25% Similarity=0.237 Sum_probs=74.8
Q ss_pred HHHHHHHHHHHHHhcchhHHHHHHHhhHHHHHhh-hhhH---HhhHHHHHHHHHHHHHHHHHHHHHHh----hhhhhhhh
Q 005043 569 QFYESKMAALIRKNGILEGQLAAALVNREAAEKN-FSSV---LKSRQEMEKKLADSLKEMELLKEKLA----GLELAQEE 640 (717)
Q Consensus 569 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~-~~~~---~~~~~~~~~~~~~~~~~~~~l~~~~~----~~~~~~~~ 640 (717)
.--|.+++...+....|+.|+..+.+..+++|.. +..+ ++-|++|-++-..+-+|.+..+--+. .+..|++.
T Consensus 94 ~qAea~la~a~~~~~~~~a~~~~~~A~i~~a~a~~l~~a~~~~~R~~~L~~~g~vs~~~~~~a~~a~~~A~A~~~~a~~~ 173 (352)
T COG1566 94 EQAEAALAAAEAQLRNLRAQLASAQALIAQAEAQDLDQAQNELERRAELAQRGVVSREELDRARAALQAAEAALAAAQAA 173 (352)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHHHHHHHhHHH
Confidence 3567788888999999999999999999999885 5554 56667777666666666666444332 23333343
Q ss_pred hcccccccccCCccchhhHHHHHHHHHHHHHHhhhhc
Q 005043 641 ANSLSNIVHSDNVRLEHDVAFLKAVLDDTQKELHSTR 677 (717)
Q Consensus 641 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 677 (717)
+..--...-++-..++-.|+=++|-++...-+|.-|.
T Consensus 174 ~~~~~~~l~~~~~~~~~~v~~a~a~~~~A~l~L~~T~ 210 (352)
T COG1566 174 QKQNLALLESEVSGAQAQVASAEAALDQAKLDLERTV 210 (352)
T ss_pred HHHHHHHHhhhhccchhHHHHHHHHHHHHHHHhhCCE
Confidence 4433334445556667788999999988888887763
No 211
>PF10211 Ax_dynein_light: Axonemal dynein light chain; InterPro: IPR019347 Axonemal dynein light chain proteins play a dynamic role in flagellar and cilial motility. Eukaryotic cilia and flagella are complex organelles consisting of a core structure, the axoneme, which is composed of nine microtubule doublets forming a cylinder that surrounds a pair of central singlet microtubules. This ultra-structural arrangement seems to be one of the most stable micro-tubular assemblies known and is responsible for the flagellar and ciliary movement of a large number of organisms ranging from protozoan to mammals. This light chain interacts directly with the N-terminal half of the heavy chains [].
Probab=72.59 E-value=18 Score=36.17 Aligned_cols=67 Identities=22% Similarity=0.272 Sum_probs=37.1
Q ss_pred HHHHhhhhhHHhhHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhcccccccccCCccchhhHHHHHHHHHHH
Q 005043 597 EAAEKNFSSVLKSRQEMEKKLADSLKEMELLKEKLAGLELAQEEANSLSNIVHSDNVRLEHDVAFLKAVLDDT 669 (717)
Q Consensus 597 ~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 669 (717)
-++|+..+.......++++++.+..+++..|+.+...++..-++.... .+.+.+-+|.|||.--.-.
T Consensus 116 l~~e~~~~~l~~~i~~L~~e~~~L~~~~~~l~~~~e~~ek~~~e~~~~------~~k~~~~ei~~lk~~~~ql 182 (189)
T PF10211_consen 116 LQAEQGKQELEEEIEELEEEKEELEKQVQELKNKCEQLEKREEELRQE------EEKKHQEEIDFLKKQNQQL 182 (189)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHH
Confidence 333444444445555556666666666666666666665544444332 2344566888998864433
No 212
>PF09304 Cortex-I_coil: Cortexillin I, coiled coil; InterPro: IPR015383 This domain is predominantly found in the actin-bundling protein cortexillin I from Dictyostelium discoideum (Slime mold). The domain has a structure consisting of an 18-heptad-repeat alpha-helical coiled-coil, and is a prerequisite for the assembly of Cortexillin I []. ; PDB: 1D7M_A.
Probab=72.59 E-value=24 Score=31.61 Aligned_cols=58 Identities=19% Similarity=0.270 Sum_probs=36.3
Q ss_pred HHHHHHHHHHHHHhcchhHHHHHHHhhHHHHHhhhhhHHhhHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 005043 569 QFYESKMAALIRKNGILEGQLAAALVNREAAEKNFSSVLKSRQEMEKKLADSLKEMELLKEKLAGLE 635 (717)
Q Consensus 569 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 635 (717)
..++.-+-.|+..+..|+..+..-.+.++...+. .-+++.|++++.+.+|. ||+|-++
T Consensus 26 E~~K~S~~eL~kqkd~L~~~l~~L~~q~~s~~qr-------~~eLqaki~ea~~~le~--eK~ak~~ 83 (107)
T PF09304_consen 26 EDEKTSQGELAKQKDQLRNALQSLQAQNASRNQR-------IAELQAKIDEARRNLED--EKQAKLE 83 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHH--HHHHHHH
T ss_pred HHHHhhHHHHHHhHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHH--HHHHHHH
Confidence 3455555666666666655555555555444444 44678888888888886 6777654
No 213
>KOG1029 consensus Endocytic adaptor protein intersectin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=72.57 E-value=14 Score=43.53 Aligned_cols=124 Identities=31% Similarity=0.316 Sum_probs=63.6
Q ss_pred HHHHHHHHHHHHHhcchhHHHHH-----HHhhHHHHHhhhhhHHhhHHHHHHHHHH-------HHHHHHH-----HHHHH
Q 005043 569 QFYESKMAALIRKNGILEGQLAA-----ALVNREAAEKNFSSVLKSRQEMEKKLAD-------SLKEMEL-----LKEKL 631 (717)
Q Consensus 569 ~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~e~~~~~~~~~~~~~~~~~~~-------~~~~~~~-----l~~~~ 631 (717)
.-|++=.+.|=||--+||.|--. +..+||+.||+ -+.|||-|+|-.. ..+|+|. -|..+
T Consensus 320 eNy~kGqaELerRRq~leeqqqreree~eqkEreE~ekk----ererqEqErk~qlElekqLerQReiE~qrEEerkkei 395 (1118)
T KOG1029|consen 320 ENYEKGQAELERRRQALEEQQQREREEVEQKEREEEEKK----ERERQEQERKAQLELEKQLERQREIERQREEERKKEI 395 (1118)
T ss_pred HhHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35666666677777777666443 33445555554 3455555554322 1122222 33345
Q ss_pred hhhhhhhhhhcccccccccCCccchhhHHHHHHHHHHHHHHhhhhccchhhccccceeeEEEeehhhhhhhhhcccC
Q 005043 632 AGLELAQEEANSLSNIVHSDNVRLEHDVAFLKAVLDDTQKELHSTRGVLAGERARAFQLQVEVFHLKQRLQSLENRA 708 (717)
Q Consensus 632 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 708 (717)
...|.|.+|...- -+||-|=|=.+-.|- ||+-.--+ +.-+-+|-=|||+|.--|..++|.|++|-
T Consensus 396 e~rEaar~ElEkq--------RqlewErar~qem~~--Qk~reqe~--iv~~nak~~ql~~eletLn~k~qqls~kl 460 (1118)
T KOG1029|consen 396 ERREAAREELEKQ--------RQLEWERARRQEMLN--QKNREQEW--IVYLNAKKKQLQQELETLNFKLQQLSGKL 460 (1118)
T ss_pred HHHHHHHHHHHHH--------HHHHHHHHHHHHHHh--hhhHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Confidence 5666666554431 123333222222221 22221112 22266677788888888888888888764
No 214
>PF00769 ERM: Ezrin/radixin/moesin family; InterPro: IPR011259 The ERM family consists of three closely-related proteins, ezrin, radixin and moesin []. Ezrin was first identified as a constituent of microvilli [], radixin as a barbed, end-capping actin-modulating protein from isolated junctional fractions [], and moesin as a heparin binding protein []. A tumour suppressor molecule responsible for neurofibromatosis type 2 (NF2) is highly similar to ERM proteins and has been designated merlin (moesin-ezrin-radixin-like protein). ERM molecules contain 3 domains, an N-terminal globular domain; an extended alpha-helical domain; and a charged C-terminal domain []. Ezrin, radixin and merlin also contain a polyproline region between the helical and C-terminal domains. The N-terminal domain is highly conserved, and is also found in merlin, band 4.1 proteins and members of the band 4.1 superfamily. ERM proteins crosslink actin filaments with plasma membranes. They co-localise with CD44 at actin filament-plasma membrane interaction sites, associating with CD44 via their N-terminal domains and with actin filaments via their C-terminal domains [].; GO: 0008092 cytoskeletal protein binding, 0005737 cytoplasm, 0019898 extrinsic to membrane; PDB: 2I1J_A 2I1K_A 1E5W_A 1EF1_C.
Probab=72.04 E-value=11 Score=39.31 Aligned_cols=49 Identities=24% Similarity=0.246 Sum_probs=17.4
Q ss_pred chhHHHHHHHhhHHHHHhhhhhHHhhHHHHHHHHHHHHHHHHHHHHHHh
Q 005043 584 ILEGQLAAALVNREAAEKNFSSVLKSRQEMEKKLADSLKEMELLKEKLA 632 (717)
Q Consensus 584 ~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 632 (717)
.|+.++--|...++.+|++...+-...+.|+.......+|.+.|..++.
T Consensus 37 ~Leek~k~aeeea~~Le~k~~eaee~~~rL~~~~~~~~eEk~~Le~e~~ 85 (246)
T PF00769_consen 37 ELEEKLKQAEEEAEELEQKRQEAEEEKQRLEEEAEMQEEEKEQLEQELR 85 (246)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------------HHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444444444444444444444444444444444444444444444443
No 215
>COG3823 Glutamine cyclotransferase [Posttranslational modification, protein turnover, chaperones]
Probab=71.86 E-value=1.2e+02 Score=30.89 Aligned_cols=187 Identities=13% Similarity=0.136 Sum_probs=101.0
Q ss_pred eEEEEECCEEEEEcccCCCCCcccEEEEEcCCCceEEccccccCCCCCCCCCCCcccceEEEEECCEEEEEeccCCCCCC
Q 005043 92 HAAAVIGNKMIVVGGESGNGLLDDVQVLNFDRFSWTAASSKLYLSPSSLPLKIPACRGHSLISWGKKVLLVGGKTDSGSD 171 (717)
Q Consensus 92 haav~~~~~lyV~GG~~~~~~~~~v~~yd~~t~~W~~l~~~~~~~~~~~~~~~p~r~~hs~v~~~~~Iyv~GG~~~~~~~ 171 (717)
.+....++++|.--|.-+. +.+.++|+.+.+-..-.+ +.++..++-+.+.+++.+|..-=..
T Consensus 49 QGL~~~~g~i~esTG~yg~---S~ir~~~L~~gq~~~s~~----------l~~~~~FgEGit~~gd~~y~LTw~e----- 110 (262)
T COG3823 49 QGLEYLDGHILESTGLYGF---SKIRVSDLTTGQEIFSEK----------LAPDTVFGEGITKLGDYFYQLTWKE----- 110 (262)
T ss_pred cceeeeCCEEEEecccccc---ceeEEEeccCceEEEEee----------cCCccccccceeeccceEEEEEecc-----
Confidence 3455668888888776543 478999998653222222 2334667788999999999984332
Q ss_pred ceEEEEEECCCCcEEEeeecCCCCCCceeeEEEEECCEEEEEccccCCCCCcCcEEEEEcCCCceE---eccCCCCCCCC
Q 005043 172 RVSVWTFDTETECWSVVEAKGDIPVARSGHTVVRASSVLILFGGEDGKRRKLNDLHMFDLKSLTWL---PLHCTGTGPSP 248 (717)
Q Consensus 172 ~~~v~~yD~~t~~W~~l~~~g~~P~~R~~hs~~~~~~~Lyv~GG~~~~~~~~~~v~~yD~~t~~W~---~l~~~g~~P~~ 248 (717)
.-.+.||+.+- ..+ +..+..-.+.+.+..+..|++--|. ..+..-||++..=. .+... ..|..
T Consensus 111 -gvaf~~d~~t~--~~l---g~~~y~GeGWgLt~d~~~LimsdGs-------atL~frdP~tfa~~~~v~VT~~-g~pv~ 176 (262)
T COG3823 111 -GVAFKYDADTL--EEL---GRFSYEGEGWGLTSDDKNLIMSDGS-------ATLQFRDPKTFAELDTVQVTDD-GVPVS 176 (262)
T ss_pred -ceeEEEChHHh--hhh---cccccCCcceeeecCCcceEeeCCc-------eEEEecCHHHhhhcceEEEEEC-Ceecc
Confidence 13678887653 222 2356667788888888787776553 33444466543211 01100 11111
Q ss_pred CcccEEEEECCcEEEEEcCCCCCCCCCeEEEEECCCCc---EEEeecCCCCCCCCcce-----EEEEE--CCEEEEEec
Q 005043 249 RSNHVAALYDDKNLLIFGGSSKSKTLNDLYSLDFETMI---WTRIKIRGFHPSPRAGC-----CGVLC--GTKWYIAGG 317 (717)
Q Consensus 249 R~~~aa~~~~~~~lyV~GG~~~~~~~ndv~~yd~~t~~---W~~v~~~g~~P~~R~~~-----sav~~--~~~IyV~GG 317 (717)
.- .-.-.+++. +|. +-=..+.|.+.||+++. |..++.....-.++..+ +.+.. .+++||.|-
T Consensus 177 ~L-NELE~VdG~-lyA-----NVw~t~~I~rI~p~sGrV~~widlS~L~~~~~~~~~~~nvlNGIA~~~~~~r~~iTGK 248 (262)
T COG3823 177 KL-NELEWVDGE-LYA-----NVWQTTRIARIDPDSGRVVAWIDLSGLLKELNLDKSNDNVLNGIAHDPQQDRFLITGK 248 (262)
T ss_pred cc-cceeeeccE-EEE-----eeeeecceEEEcCCCCcEEEEEEccCCchhcCccccccccccceeecCcCCeEEEecC
Confidence 00 011122333 332 11123568899998876 77776542222223222 22222 467777774
No 216
>PRK05431 seryl-tRNA synthetase; Provisional
Probab=71.58 E-value=17 Score=41.17 Aligned_cols=65 Identities=18% Similarity=0.271 Sum_probs=36.1
Q ss_pred hHHHHHHHhhHHHHHhhhhhHHh---hHHHHHHHHHHHHHHHHHHHHHHhhhhhhh-hhhccccccccc
Q 005043 586 EGQLAAALVNREAAEKNFSSVLK---SRQEMEKKLADSLKEMELLKEKLAGLELAQ-EEANSLSNIVHS 650 (717)
Q Consensus 586 ~~~~~~~~~~~~~~e~~~~~~~~---~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~-~~~~~~~~~~~~ 650 (717)
..|++...+.+-++-|.+....+ ..+++.++...+.+++..|++++..+|..- +....|-|++|.
T Consensus 41 ~~~~~~lr~~rn~~sk~i~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~iPN~~~~ 109 (425)
T PRK05431 41 QTELEELQAERNALSKEIGQAKRKGEDAEALIAEVKELKEEIKALEAELDELEAELEELLLRIPNLPHD 109 (425)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCc
Confidence 33444444444444444433222 233455555556666666666666655433 667889999998
No 217
>KOG4593 consensus Mitotic checkpoint protein MAD1 [Cell cycle control, cell division, chromosome partitioning]
Probab=71.54 E-value=23 Score=41.63 Aligned_cols=100 Identities=18% Similarity=0.160 Sum_probs=73.8
Q ss_pred HHHHHHHHHHHhc-chhHHHHHHHhhHHHHHhhhhhHHhhHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhcccccccc
Q 005043 571 YESKMAALIRKNG-ILEGQLAAALVNREAAEKNFSSVLKSRQEMEKKLADSLKEMELLKEKLAGLELAQEEANSLSNIVH 649 (717)
Q Consensus 571 ~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 649 (717)
.|++++..+.++. ..++-+..++..+.++|++++..-.-|++.+.+++.+..++.+.|+++..+..
T Consensus 120 ~e~~lq~q~e~~~n~~q~~~~k~~el~~e~~~k~ae~~~lr~k~dss~s~~q~e~~~~~~~~~~~~s------------- 186 (716)
T KOG4593|consen 120 QEEKLQEQLERNRNQCQANLKKELELLREKEDKLAELGTLRNKLDSSLSELQWEVMLQEMRAKRLHS------------- 186 (716)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------------
Confidence 3455555555555 77788889999999999999999999999999999999999999988876542
Q ss_pred cCCccchhhHHHHHHHHHHHHHHhhhhccchhhccccc
Q 005043 650 SDNVRLEHDVAFLKAVLDDTQKELHSTRGVLAGERARA 687 (717)
Q Consensus 650 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 687 (717)
.=-++| .-|+-.-.+.|+|.|+++..++-=+.|+
T Consensus 187 -~l~~~e---ke~~~~~~ql~~~~q~~~~~~~~l~e~~ 220 (716)
T KOG4593|consen 187 -ELQNEE---KELDRQHKQLQEENQKIQELQASLEERA 220 (716)
T ss_pred -HHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 111222 2233444577888888888877666554
No 218
>PF00038 Filament: Intermediate filament protein; InterPro: IPR016044 Intermediate filaments (IF) [, , ] are proteins which are primordial components of the cytoskeleton and the nuclear envelope. They generally form filamentous structures 8 to 14 nm wide. IF proteins are members of a very large multigene family of proteins which has been subdivided in five major subgroups: Type I: Acidic cytokeratins. Type II: Basic cytokeratins. Type III: Vimentin, desmin, glial fibrillary acidic protein (GFAP), peripherin, and plasticin. Type IV: Neurofilaments L, H and M, alpha-internexin and nestin. Type V: Nuclear lamins A, B1, B2 and C. All IF proteins are structurally similar in that they consist of: a central rod domain comprising some 300 to 350 residues which is arranged in coiled-coiled alpha-helices, with at least two short characteristic interruptions; a N-terminal non-helical domain (head) of variable length; and a C-terminal domain (tail) which is also non-helical, and which shows extreme length variation between different IF proteins. While IF proteins are evolutionary and structurally related, they have limited sequence homologies except in several regions of the rod domain. This entry represents the central rod domain found in IF proteins.; PDB: 3TNU_B 3KLT_D 1GK4_F 3TRT_A 3G1E_A 3UF1_C 1GK6_B 1GK7_A 3TYY_B 3V4W_A ....
Probab=71.36 E-value=9.5 Score=40.96 Aligned_cols=98 Identities=22% Similarity=0.286 Sum_probs=58.5
Q ss_pred HHHHHHHHHHHHhcchhHHHHHHHhh---------------HHHHHhhhhhHHhhHHHHHHHHHHHHHHHHHHHHHHhhh
Q 005043 570 FYESKMAALIRKNGILEGQLAAALVN---------------REAAEKNFSSVLKSRQEMEKKLADSLKEMELLKEKLAGL 634 (717)
Q Consensus 570 ~~~~~~~~~~~~~~~~~~~~~~~~~~---------------~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 634 (717)
.|=.|+..|=..|..|+.|+...... ..++.+.+..+...+..++..+.....+++.+|.|+...
T Consensus 15 ~YIekVr~LE~~N~~Le~~i~~~~~~~~~~~~~~~~~ye~el~~lr~~id~~~~eka~l~~e~~~l~~e~~~~r~k~e~e 94 (312)
T PF00038_consen 15 SYIEKVRFLEQENKRLESEIEELREKKGEEVSRIKEMYEEELRELRRQIDDLSKEKARLELEIDNLKEELEDLRRKYEEE 94 (312)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH---------HHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhhhHHHHHHHHhcccccCcccccchhhHHHHhHHhhhhHHHHhhHHhhhhhhHHHHHHHHHHHHHHH
Confidence 46667777777777788777766554 123334666677777888888888888888887777665
Q ss_pred hhh----hhhhcccccccccCC---ccchhhHHHHHHHHH
Q 005043 635 ELA----QEEANSLSNIVHSDN---VRLEHDVAFLKAVLD 667 (717)
Q Consensus 635 ~~~----~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~ 667 (717)
..+ +.+.++|...++... +.||..+.-|+.=|+
T Consensus 95 ~~~~~~le~el~~lrk~ld~~~~~r~~le~~i~~L~eEl~ 134 (312)
T PF00038_consen 95 LAERKDLEEELESLRKDLDEETLARVDLENQIQSLKEELE 134 (312)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhhhhhhhhhhhHhHHHHHHHHHHHHHH
Confidence 432 244444444444332 335555666655443
No 219
>KOG0646 consensus WD40 repeat protein [General function prediction only]
Probab=71.02 E-value=87 Score=35.17 Aligned_cols=24 Identities=17% Similarity=0.349 Sum_probs=18.9
Q ss_pred ECCEEEEEecCCCCCccCeEEEEECCCCc
Q 005043 308 CGTKWYIAGGGSRKKRHAETLIFDILKGE 336 (717)
Q Consensus 308 ~~~~IyV~GG~~~~~~~~dv~~yD~~t~~ 336 (717)
.++.+++.|+.++. +-++|+.+..
T Consensus 287 ~DgtlLlSGd~dg~-----VcvWdi~S~Q 310 (476)
T KOG0646|consen 287 TDGTLLLSGDEDGK-----VCVWDIYSKQ 310 (476)
T ss_pred cCccEEEeeCCCCC-----EEEEecchHH
Confidence 48999999998765 7788877654
No 220
>KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms]
Probab=70.99 E-value=63 Score=36.64 Aligned_cols=93 Identities=16% Similarity=0.196 Sum_probs=58.6
Q ss_pred EEEEECCCC----cEEEeecCCCCCCCCcceEEEEECCEEEEEecCCCCCccCeEEEEECCCCcEEEeecCCCCCCCCCc
Q 005043 277 LYSLDFETM----IWTRIKIRGFHPSPRAGCCGVLCGTKWYIAGGGSRKKRHAETLIFDILKGEWSVAITSPSSSVTSNK 352 (717)
Q Consensus 277 v~~yd~~t~----~W~~v~~~g~~P~~R~~~sav~~~~~IyV~GG~~~~~~~~dv~~yD~~t~~W~~l~~~p~~~~~~r~ 352 (717)
|..||.... .|.... ..|-.+.+.+..+..|++.=|++.. ++.||.....-+.... .-.
T Consensus 189 VtlwDv~g~sp~~~~~~~H-----sAP~~gicfspsne~l~vsVG~Dkk-----i~~yD~~s~~s~~~l~-------y~~ 251 (673)
T KOG4378|consen 189 VTLWDVQGMSPIFHASEAH-----SAPCRGICFSPSNEALLVSVGYDKK-----INIYDIRSQASTDRLT-------YSH 251 (673)
T ss_pred EEEEeccCCCcccchhhhc-----cCCcCcceecCCccceEEEecccce-----EEEeecccccccceee-------ecC
Confidence 778887543 354443 2355566667778999999998755 9999998654433221 111
Q ss_pred ceEEEEEEeCCCcEEEEEcCCCCCCCCeEEEEEccCCccc
Q 005043 353 GFTLVLVQHKEKDFLVAFGGIKKEPSNQVEVLSIEKNESS 392 (717)
Q Consensus 353 g~s~v~v~~~~~~~I~v~GG~~~~~~n~v~vyd~~~~eW~ 392 (717)
-++.+.+. ..+.++++|-..| .++.||++...-+
T Consensus 252 Plstvaf~--~~G~~L~aG~s~G----~~i~YD~R~~k~P 285 (673)
T KOG4378|consen 252 PLSTVAFS--ECGTYLCAGNSKG----ELIAYDMRSTKAP 285 (673)
T ss_pred Ccceeeec--CCceEEEeecCCc----eEEEEecccCCCC
Confidence 13444443 4677777776654 5789998877643
No 221
>KOG1332 consensus Vesicle coat complex COPII, subunit SEC13 [Intracellular trafficking, secretion, and vesicular transport]
Probab=70.78 E-value=79 Score=32.83 Aligned_cols=24 Identities=21% Similarity=0.392 Sum_probs=14.7
Q ss_pred EEEEcCCCCCCCCCeEEEEECCCCcEEEe
Q 005043 262 LLIFGGSSKSKTLNDLYSLDFETMIWTRI 290 (717)
Q Consensus 262 lyV~GG~~~~~~~ndv~~yd~~t~~W~~v 290 (717)
-++.||.++. |-+++.+.++|..-
T Consensus 177 rlvSgGcDn~-----VkiW~~~~~~w~~e 200 (299)
T KOG1332|consen 177 RLVSGGCDNL-----VKIWKFDSDSWKLE 200 (299)
T ss_pred eeeccCCccc-----eeeeecCCcchhhh
Confidence 4788888643 44444445577644
No 222
>PF12217 End_beta_propel: Catalytic beta propeller domain of bacteriophage endosialidase; InterPro: IPR024428 This entry represents the beta propeller domain of endosialidases, which consists of catalytically active part of the enzymes. This core domain forms stable SDS-resistant trimers. There is a nested beta barrel domain in this domain. This domain is typically between 443 and 460 amino acids in length [].; PDB: 1V0E_B 1V0F_E 3JU4_A 3GVL_A 3GVK_B 3GVJ_A.
Probab=70.74 E-value=1.4e+02 Score=31.25 Aligned_cols=183 Identities=17% Similarity=0.239 Sum_probs=81.9
Q ss_pred CCCCeEEeeecCCCCC-------CcceeEEEEECCEEEEEcccCCCCCcccEEE-EEcC------CCceEEccccccCCC
Q 005043 72 NSENWMVLSIAGDKPI-------PRFNHAAAVIGNKMIVVGGESGNGLLDDVQV-LNFD------RFSWTAASSKLYLSP 137 (717)
Q Consensus 72 ~s~~W~~l~~~g~~P~-------~R~~haav~~~~~lyV~GG~~~~~~~~~v~~-yd~~------t~~W~~l~~~~~~~~ 137 (717)
....|+.-... ..|. .-.-|+.+.+++.=|.+|=.++.-....+=. |-+. .-.=+.++..
T Consensus 113 ~~spW~~teL~-~~~~~~~a~~~vTe~HSFa~i~~~~fA~GyHnGD~sPRe~G~~yfs~~~~sp~~~vrr~i~se----- 186 (367)
T PF12217_consen 113 HDSPWRITELG-TIASFTSAGVAVTELHSFATIDDNQFAVGYHNGDVSPRELGFLYFSDAFASPGVFVRRIIPSE----- 186 (367)
T ss_dssp TTS--EEEEEE-S-TT--------SEEEEEEE-SSS-EEEEEEE-SSSS-EEEEEEETTTTT-TT--EEEE--GG-----
T ss_pred ccCCceeeecc-cccccccccceeeeeeeeeEecCCceeEEeccCCCCcceeeEEEecccccCCcceeeeechhh-----
Confidence 56778754322 2332 3456777788887778875444433333322 2111 1112223321
Q ss_pred CCCCCCCCcccceEEEEECCEEEEEeccCCCCCCceEEEEEECCCCcEEEeeecCCCCCCceeeE--EEEECCEEEEEcc
Q 005043 138 SSLPLKIPACRGHSLISWGKKVLLVGGKTDSGSDRVSVWTFDTETECWSVVEAKGDIPVARSGHT--VVRASSVLILFGG 215 (717)
Q Consensus 138 ~~~~~~~p~r~~hs~v~~~~~Iyv~GG~~~~~~~~~~v~~yD~~t~~W~~l~~~g~~P~~R~~hs--~~~~~~~Lyv~GG 215 (717)
-.+.....|+-.+++.+|+.--...+...-+.+.+-+.....|+.+.. |....... .+..++.||+||-
T Consensus 187 -----y~~~AsEPCvkyY~g~LyLtTRgt~~~~~GS~L~rs~d~G~~w~slrf----p~nvHhtnlPFakvgD~l~mFgs 257 (367)
T PF12217_consen 187 -----YERNASEPCVKYYDGVLYLTTRGTLPTNPGSSLHRSDDNGQNWSSLRF----PNNVHHTNLPFAKVGDVLYMFGS 257 (367)
T ss_dssp -----G-TTEEEEEEEEETTEEEEEEEES-TTS---EEEEESSTTSS-EEEE-----TT---SS---EEEETTEEEEEEE
T ss_pred -----hccccccchhhhhCCEEEEEEcCcCCCCCcceeeeecccCCchhhccc----cccccccCCCceeeCCEEEEEec
Confidence 112233456777899999986554444445578888888899999874 43222222 3457899999987
Q ss_pred ccCCC---------CC---cCcEEEE-------EcCCCceEeccC---CCCCCCCCcccEEEEECCc-EEEEEcCCC
Q 005043 216 EDGKR---------RK---LNDLHMF-------DLKSLTWLPLHC---TGTGPSPRSNHVAALYDDK-NLLIFGGSS 269 (717)
Q Consensus 216 ~~~~~---------~~---~~~v~~y-------D~~t~~W~~l~~---~g~~P~~R~~~aa~~~~~~-~lyV~GG~~ 269 (717)
....+ .+ ....+.. .++.-.|..+.. .|..-..-.+-..+++.+. ..|+|||.+
T Consensus 258 ERA~~EWE~G~~D~RY~~~yPRtF~~k~nv~~W~~d~~ew~nitdqIYqG~ivNSavGVGSv~~KD~~lyy~FGgED 334 (367)
T PF12217_consen 258 ERAENEWEGGEPDNRYRANYPRTFMLKVNVSDWSLDDVEWVNITDQIYQGGIVNSAVGVGSVVVKDGWLYYIFGGED 334 (367)
T ss_dssp -SSTT-SSTT-----SS-B--EEEEEEEETTT---TT---EEEEE-BB--SSS---SEEEEEEEETTEEEEEEEEB-
T ss_pred cccccccccCCCcccccccCCceEEEEeecccCCccceEEEEeecceeccccccccccceeEEEECCEEEEEecCcc
Confidence 63221 11 1122222 233344554431 2333333344455556555 456899964
No 223
>PRK10929 putative mechanosensitive channel protein; Provisional
Probab=70.60 E-value=8.8 Score=48.21 Aligned_cols=107 Identities=11% Similarity=0.102 Sum_probs=71.5
Q ss_pred HHHHHHHHHHHhcchhHHHHHHHhhHHHHHhhhhh---------HHhhHHHHHHHHHHHHHHHHHHHHHHhhh-------
Q 005043 571 YESKMAALIRKNGILEGQLAAALVNREAAEKNFSS---------VLKSRQEMEKKLADSLKEMELLKEKLAGL------- 634 (717)
Q Consensus 571 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~---------~~~~~~~~~~~~~~~~~~~~~l~~~~~~~------- 634 (717)
+-++++....+...++.+++.|-+.++++.++|.. ..-+..++|.++..+.-+...+++.++..
T Consensus 56 ~l~~~~~~~~~~~~~~~~i~~ap~~~~~~~~~l~~~~~~~~~~~~~~s~~~Leq~l~~~~~~L~~~q~~l~~~~~~~~~~ 135 (1109)
T PRK10929 56 WLEERKGSLERAKQYQQVIDNFPKLSAELRQQLNNERDEPRSVPPNMSTDALEQEILQVSSQLLEKSRQAQQEQDRAREI 135 (1109)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhhhcccccccccCCHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHH
Confidence 34667777778888888888888888888777662 12246788888888887777777777643
Q ss_pred -----------hhhh---hhhcc-ccccc-------ccCCccchhhHHHHHHHHHHHHHHhhhhc
Q 005043 635 -----------ELAQ---EEANS-LSNIV-------HSDNVRLEHDVAFLKAVLDDTQKELHSTR 677 (717)
Q Consensus 635 -----------~~~~---~~~~~-~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 677 (717)
-.|+ .|.++ |.+.. .+-...|+.+.++|++=++..|.||-|.-
T Consensus 136 ~~~l~~~pq~~~~~~~~l~~i~~~L~~~~~~~~~l~~a~~~~lqae~~~l~~~~~~l~~~l~s~~ 200 (1109)
T PRK10929 136 SDSLSQLPQQQTEARRQLNEIERRLQTLGTPNTPLAQAQLTALQAESAALKALVDELELAQLSAN 200 (1109)
T ss_pred HHHHhhchhhHHHHHHHHHHHHHHHhCCCCCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHhccH
Confidence 1222 22222 32211 12245567899999999999999998643
No 224
>PRK09039 hypothetical protein; Validated
Probab=70.57 E-value=23 Score=38.81 Aligned_cols=67 Identities=19% Similarity=0.173 Sum_probs=32.7
Q ss_pred HHHHHHHHHHHhcchhHHHHHHHhhHHHH-------HhhhhhHHhhHHHHHHHHHHHHHHHHHHHHHHhhhhhh
Q 005043 571 YESKMAALIRKNGILEGQLAAALVNREAA-------EKNFSSVLKSRQEMEKKLADSLKEMELLKEKLAGLELA 637 (717)
Q Consensus 571 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------e~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 637 (717)
.+..+..+..+.+.||.++++.-....++ ++.|+..-....+.-.++..+..+++.||+.++.+|.+
T Consensus 86 l~~~l~~a~~~r~~Le~~~~~~~~~~~~~~~~~~~l~~~L~~~k~~~se~~~~V~~L~~qI~aLr~Qla~le~~ 159 (343)
T PRK09039 86 LRASLSAAEAERSRLQALLAELAGAGAAAEGRAGELAQELDSEKQVSARALAQVELLNQQIAALRRQLAALEAA 159 (343)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhhhhcchHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444456666667777665332222222 33444444444444445555555555555555555443
No 225
>TIGR01843 type_I_hlyD type I secretion membrane fusion protein, HlyD family. Type I secretion is an ABC transport process that exports proteins, without cleavage of any signal sequence, from the cytosol to extracellular medium across both inner and outer membranes. The secretion signal is found in the C-terminus of the transported protein. This model represents the adaptor protein between the ATP-binding cassette (ABC) protein of the inner membrane and the outer membrane protein, and is called the membrane fusion protein. This model selects a subfamily closely related to HlyD; it is defined narrowly and excludes, for example, colicin V secretion protein CvaA and multidrug efflux proteins.
Probab=70.36 E-value=21 Score=39.68 Aligned_cols=21 Identities=19% Similarity=0.303 Sum_probs=11.2
Q ss_pred hhhHHHHHHHHHHHHHHhhhh
Q 005043 656 EHDVAFLKAVLDDTQKELHST 676 (717)
Q Consensus 656 ~~~~~~~~~~~~~~~~~~~~~ 676 (717)
+.+++-+++-++..+.+|..|
T Consensus 252 ~~~l~~~~~~l~~~~~~l~~~ 272 (423)
T TIGR01843 252 QARLAELRERLNKARDRLQRL 272 (423)
T ss_pred HHHHHHHHHHHHHHHHHHhhc
Confidence 345555555555555555443
No 226
>TIGR00414 serS seryl-tRNA synthetase. This model represents the seryl-tRNA synthetase found in most organisms. This protein is a class II tRNA synthetase, and is recognized by the pfam model tRNA-synt_2b. The seryl-tRNA synthetases of two archaeal species, Methanococcus jannaschii and Methanobacterium thermoautotrophicum, differ considerably and are included in a different model.
Probab=70.22 E-value=18 Score=40.76 Aligned_cols=67 Identities=22% Similarity=0.298 Sum_probs=34.2
Q ss_pred hhHHHHHHHhhHHHHHhhhhhHHhh----HHHHHHHHHHHHHHHHHHHHHHhhhhhhh-hhhcccccccccC
Q 005043 585 LEGQLAAALVNREAAEKNFSSVLKS----RQEMEKKLADSLKEMELLKEKLAGLELAQ-EEANSLSNIVHSD 651 (717)
Q Consensus 585 ~~~~~~~~~~~~~~~e~~~~~~~~~----~~~~~~~~~~~~~~~~~l~~~~~~~~~~~-~~~~~~~~~~~~~ 651 (717)
+..|+....+.+-++-|.+....+. .+++.++...+.+++..|++++..+|... +....|-|++|.|
T Consensus 42 ~~~~~~~l~~erN~~sk~i~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~lPN~~~~~ 113 (418)
T TIGR00414 42 LLSEIEELQAKRNELSKQIGKAKGQKKDKIEEIKKELKELKEELTELSAALKALEAELQDKLLSIPNIPHES 113 (418)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCcc
Confidence 3344444445555544444332211 33444444444445555555555444433 4567799999964
No 227
>PF10473 CENP-F_leu_zip: Leucine-rich repeats of kinetochore protein Cenp-F/LEK1; InterPro: IPR019513 Cenp-F, a centromeric kinetochore, microtubule-binding protein consisting of two 1,600-amino acid-long coils, is essential for the full functioning of the mitotic checkpoint pathway [, ]. There are several leucine-rich repeats along the sequence of LEK1 that are considered to be zippers, though they do not appear to be binding DNA directly in this instance []. ; GO: 0008134 transcription factor binding, 0042803 protein homodimerization activity, 0045502 dynein binding
Probab=70.07 E-value=28 Score=33.05 Aligned_cols=61 Identities=20% Similarity=0.171 Sum_probs=40.6
Q ss_pred chhHHHHHHHhhHHHHHhhhhhHHhhHHHHHHHHHHHHHHHHH-------HHHHHhhhhhhhhhhccc
Q 005043 584 ILEGQLAAALVNREAAEKNFSSVLKSRQEMEKKLADSLKEMEL-------LKEKLAGLELAQEEANSL 644 (717)
Q Consensus 584 ~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~-------l~~~~~~~~~~~~~~~~~ 644 (717)
.++-+...+.+..+..+-.++.++..++.++..|..+.+|.+. .++||..+|..+.+.-++
T Consensus 42 ~~~~daEn~k~eie~L~~el~~lt~el~~L~~EL~~l~sEk~~L~k~lq~~q~kv~eLE~~~~~~~~~ 109 (140)
T PF10473_consen 42 CLILDAENSKAEIETLEEELEELTSELNQLELELDTLRSEKENLDKELQKKQEKVSELESLNSSLENL 109 (140)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHH
Confidence 3333444444444455557888888899898888877777665 477788888766555443
No 228
>KOG2048 consensus WD40 repeat protein [General function prediction only]
Probab=69.93 E-value=2.3e+02 Score=33.39 Aligned_cols=162 Identities=15% Similarity=0.286 Sum_probs=87.2
Q ss_pred eEEEEECCEEEEEeccCCCCCCceEEEEEECCCCcEEEeeecCCCCCCceeeEEEE---ECCEEEEEccccCCCCCcCcE
Q 005043 150 HSLISWGKKVLLVGGKTDSGSDRVSVWTFDTETECWSVVEAKGDIPVARSGHTVVR---ASSVLILFGGEDGKRRKLNDL 226 (717)
Q Consensus 150 hs~v~~~~~Iyv~GG~~~~~~~~~~v~~yD~~t~~W~~l~~~g~~P~~R~~hs~~~---~~~~Lyv~GG~~~~~~~~~~v 226 (717)
++++.-++.++++|-.. .-.+|+..+.-+ ..+....++|..+...+... .++++++.- ....++
T Consensus 387 ~~aiSPdg~~Ia~st~~-----~~~iy~L~~~~~--vk~~~v~~~~~~~~~a~~i~ftid~~k~~~~s------~~~~~l 453 (691)
T KOG2048|consen 387 CAAISPDGNLIAISTVS-----RTKIYRLQPDPN--VKVINVDDVPLALLDASAISFTIDKNKLFLVS------KNIFSL 453 (691)
T ss_pred eeccCCCCCEEEEeecc-----ceEEEEeccCcc--eeEEEeccchhhhccceeeEEEecCceEEEEe------ccccee
Confidence 44444466677775542 113555444432 12222235777775544433 356777774 224568
Q ss_pred EEEEcCCCceEeccCCCC-CCCCCcccEEEEECCcEEEEEcCCCCCCCCCeEEEEECCCCcEEEeecCCCCCCCCcceEE
Q 005043 227 HMFDLKSLTWLPLHCTGT-GPSPRSNHVAALYDDKNLLIFGGSSKSKTLNDLYSLDFETMIWTRIKIRGFHPSPRAGCCG 305 (717)
Q Consensus 227 ~~yD~~t~~W~~l~~~g~-~P~~R~~~aa~~~~~~~lyV~GG~~~~~~~ndv~~yd~~t~~W~~v~~~g~~P~~R~~~sa 305 (717)
+.++..+-+-.++....+ ...+-..+-++.-+|.+|.++++. ..|++|++++.+-..+... .+...++
T Consensus 454 e~~el~~ps~kel~~~~~~~~~~~I~~l~~SsdG~yiaa~~t~------g~I~v~nl~~~~~~~l~~r-----ln~~vTa 522 (691)
T KOG2048|consen 454 EEFELETPSFKELKSIQSQAKCPSISRLVVSSDGNYIAAISTR------GQIFVYNLETLESHLLKVR-----LNIDVTA 522 (691)
T ss_pred EEEEecCcchhhhhccccccCCCcceeEEEcCCCCEEEEEecc------ceEEEEEcccceeecchhc-----cCcceee
Confidence 888888777766642111 112222333344456667777754 4699999999887766532 1122222
Q ss_pred EE----ECCEEEEEecCCCCCccCeEEEEECCC---CcEEEee
Q 005043 306 VL----CGTKWYIAGGGSRKKRHAETLIFDILK---GEWSVAI 341 (717)
Q Consensus 306 v~----~~~~IyV~GG~~~~~~~~dv~~yD~~t---~~W~~l~ 341 (717)
+. ..+.+.|.-- .+.++.||+.. ..|....
T Consensus 523 ~~~~~~~~~~lvvats------~nQv~efdi~~~~l~~ws~~n 559 (691)
T KOG2048|consen 523 AAFSPFVRNRLVVATS------NNQVFEFDIEARNLTRWSKNN 559 (691)
T ss_pred eeccccccCcEEEEec------CCeEEEEecchhhhhhhhhcc
Confidence 22 2355555432 24688999843 3566544
No 229
>PHA02562 46 endonuclease subunit; Provisional
Probab=69.89 E-value=28 Score=40.63 Aligned_cols=21 Identities=14% Similarity=0.134 Sum_probs=13.5
Q ss_pred chhhHHHHHHHHHHHHHHhhh
Q 005043 655 LEHDVAFLKAVLDDTQKELHS 675 (717)
Q Consensus 655 ~~~~~~~~~~~~~~~~~~~~~ 675 (717)
|+.++..+++=..+..||..+
T Consensus 384 l~~~l~~~~~~~~~~~ke~~~ 404 (562)
T PHA02562 384 LQDELDKIVKTKSELVKEKYH 404 (562)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 445666666666667777655
No 230
>KOG0266 consensus WD40 repeat-containing protein [General function prediction only]
Probab=69.88 E-value=2e+02 Score=32.66 Aligned_cols=149 Identities=14% Similarity=0.118 Sum_probs=74.4
Q ss_pred CCEEEEEeccCCCCCCceEEEEEECCCCcEEEeeecCCCCCCceeeEEEEECCEEEEEccccCCCCCcCcEEEEEcCCCc
Q 005043 156 GKKVLLVGGKTDSGSDRVSVWTFDTETECWSVVEAKGDIPVARSGHTVVRASSVLILFGGEDGKRRKLNDLHMFDLKSLT 235 (717)
Q Consensus 156 ~~~Iyv~GG~~~~~~~~~~v~~yD~~t~~W~~l~~~g~~P~~R~~hs~~~~~~~Lyv~GG~~~~~~~~~~v~~yD~~t~~ 235 (717)
.+.+++.|+.+. .|.++|+.+.+-...-. .-.......+..-++.+++.|.++ ..+.+||..+..
T Consensus 257 ~g~~i~Sgs~D~------tvriWd~~~~~~~~~l~---~hs~~is~~~f~~d~~~l~s~s~d------~~i~vwd~~~~~ 321 (456)
T KOG0266|consen 257 DGNLLVSGSDDG------TVRIWDVRTGECVRKLK---GHSDGISGLAFSPDGNLLVSASYD------GTIRVWDLETGS 321 (456)
T ss_pred CCCEEEEecCCC------cEEEEeccCCeEEEeee---ccCCceEEEEECCCCCEEEEcCCC------ccEEEEECCCCc
Confidence 457888888753 58888998855433221 111122222223356777776543 348889987766
Q ss_pred eEeccCCCCCCCCCcccEEEEECCcEEEEEcCCCCCCCCCeEEEEECCCCc----EEEeecCCCCCCCCcceEEEEE-CC
Q 005043 236 WLPLHCTGTGPSPRSNHVAALYDDKNLLIFGGSSKSKTLNDLYSLDFETMI----WTRIKIRGFHPSPRAGCCGVLC-GT 310 (717)
Q Consensus 236 W~~l~~~g~~P~~R~~~aa~~~~~~~lyV~GG~~~~~~~ndv~~yd~~t~~----W~~v~~~g~~P~~R~~~sav~~-~~ 310 (717)
-..+........+.....+....+. .|++.+... +.+-.||+.... |...... .+..+..+.. ++
T Consensus 322 ~~~~~~~~~~~~~~~~~~~~fsp~~-~~ll~~~~d----~~~~~w~l~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~ 391 (456)
T KOG0266|consen 322 KLCLKLLSGAENSAPVTSVQFSPNG-KYLLSASLD----RTLKLWDLRSGKSVGTYTGHSNL-----VRCIFSPTLSTGG 391 (456)
T ss_pred eeeeecccCCCCCCceeEEEECCCC-cEEEEecCC----CeEEEEEccCCcceeeecccCCc-----ceeEecccccCCC
Confidence 3211100011122112223333444 344444432 246666765432 2222111 1333343433 66
Q ss_pred EEEEEecCCCCCccCeEEEEECCC
Q 005043 311 KWYIAGGGSRKKRHAETLIFDILK 334 (717)
Q Consensus 311 ~IyV~GG~~~~~~~~dv~~yD~~t 334 (717)
++++.|+.+. .|+++|+.+
T Consensus 392 ~~i~sg~~d~-----~v~~~~~~s 410 (456)
T KOG0266|consen 392 KLIYSGSEDG-----SVYVWDSSS 410 (456)
T ss_pred CeEEEEeCCc-----eEEEEeCCc
Confidence 7777776554 488999887
No 231
>PF11365 DUF3166: Protein of unknown function (DUF3166); InterPro: IPR021507 This eukaryotic family of proteins has no known function.
Probab=69.46 E-value=5.5 Score=35.12 Aligned_cols=42 Identities=31% Similarity=0.436 Sum_probs=30.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhcccccccccCCccchhhHHHHHHHH
Q 005043 611 QEMEKKLADSLKEMELLKEKLAGLELAQEEANSLSNIVHSDNVRLEHDVAFLKAVL 666 (717)
Q Consensus 611 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 666 (717)
-++...|.=+.+|.++|+.||+.+| .+|-+|+++++=+|.-.
T Consensus 4 aeLR~qLqFvEEEa~LlRRkl~ele--------------~eN~~l~~EL~kyk~~~ 45 (96)
T PF11365_consen 4 AELRRQLQFVEEEAELLRRKLSELE--------------DENKQLTEELNKYKSKY 45 (96)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHhc
Confidence 3566777788888888888888877 34566677777666544
No 232
>KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning]
Probab=69.24 E-value=1.7e+02 Score=31.41 Aligned_cols=130 Identities=17% Similarity=0.208 Sum_probs=68.7
Q ss_pred EEEEEECCCCcEEEeeecCCCCCCceeeEEEEECCEEEEEccccCCCCCcCcEEEEEcCCCceEeccCCCCCCCCCcccE
Q 005043 174 SVWTFDTETECWSVVEAKGDIPVARSGHTVVRASSVLILFGGEDGKRRKLNDLHMFDLKSLTWLPLHCTGTGPSPRSNHV 253 (717)
Q Consensus 174 ~v~~yD~~t~~W~~l~~~g~~P~~R~~hs~~~~~~~Lyv~GG~~~~~~~~~~v~~yD~~t~~W~~l~~~g~~P~~R~~~a 253 (717)
++-.||..++.-... ....-.--.++..+..=.+.||.++. +-+||+.+..=..+. ..-.+.. +
T Consensus 36 slrlYdv~~~~l~~~-----~~~~~plL~c~F~d~~~~~~G~~dg~------vr~~Dln~~~~~~ig---th~~~i~--c 99 (323)
T KOG1036|consen 36 SLRLYDVPANSLKLK-----FKHGAPLLDCAFADESTIVTGGLDGQ------VRRYDLNTGNEDQIG---THDEGIR--C 99 (323)
T ss_pred cEEEEeccchhhhhh-----eecCCceeeeeccCCceEEEeccCce------EEEEEecCCcceeec---cCCCceE--E
Confidence 577888877632211 11111112344556666677776643 789999888766553 2111111 1
Q ss_pred EEEECCcEEEEEcCCCCCCCCCeEEEEECCCCcEEEeecCCCCCCCCcceEEEEECCEEEEEecCCCCCccCeEEEEECC
Q 005043 254 AALYDDKNLLIFGGSSKSKTLNDLYSLDFETMIWTRIKIRGFHPSPRAGCCGVLCGTKWYIAGGGSRKKRHAETLIFDIL 333 (717)
Q Consensus 254 a~~~~~~~lyV~GG~~~~~~~ndv~~yd~~t~~W~~v~~~g~~P~~R~~~sav~~~~~IyV~GG~~~~~~~~dv~~yD~~ 333 (717)
+........+|.||++.. |..+|+.... . . +..-.+-.-+++-+ .+.++|+|+.+. .+.+||+.
T Consensus 100 i~~~~~~~~vIsgsWD~~-----ik~wD~R~~~---~-~-~~~d~~kkVy~~~v-~g~~LvVg~~~r-----~v~iyDLR 163 (323)
T KOG1036|consen 100 IEYSYEVGCVISGSWDKT-----IKFWDPRNKV---V-V-GTFDQGKKVYCMDV-SGNRLVVGTSDR-----KVLIYDLR 163 (323)
T ss_pred EEeeccCCeEEEcccCcc-----EEEEeccccc---c-c-cccccCceEEEEec-cCCEEEEeecCc-----eEEEEEcc
Confidence 222212226888998754 8888886511 1 1 11112223344444 455556666443 48999987
Q ss_pred CC
Q 005043 334 KG 335 (717)
Q Consensus 334 t~ 335 (717)
+.
T Consensus 164 n~ 165 (323)
T KOG1036|consen 164 NL 165 (323)
T ss_pred cc
Confidence 64
No 233
>TIGR01554 major_cap_HK97 phage major capsid protein, HK97 family. This family represents the major capsid protein component of the heads (capsids) of bacteriophage HK97, phi-105, P27, and related phage. This model represents one of several analogous families lacking detectable sequence similarity. The gene encoding this component is typically located in an operon encoding the small and large terminase subunits, the portal protein and the prohead or maturation protease.
Probab=69.17 E-value=20 Score=39.70 Aligned_cols=42 Identities=24% Similarity=0.437 Sum_probs=26.6
Q ss_pred hhhhHHhhHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhcc
Q 005043 602 NFSSVLKSRQEMEKKLADSLKEMELLKEKLAGLELAQEEANS 643 (717)
Q Consensus 602 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 643 (717)
.+..+.+...+++++++.+.++.+.+++.+..+|...++.+.
T Consensus 28 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 69 (378)
T TIGR01554 28 ELTAAALEKEELETDVEKLKEEIKLLEDAIADLEKVTEETKR 69 (378)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhcc
Confidence 334444445567777777777777777777666665555444
No 234
>PF05701 WEMBL: Weak chloroplast movement under blue light; InterPro: IPR008545 This family consists of several plant proteins of unknown function. Several sequences in this family are described as being myosin heavy chain-like.
Probab=69.13 E-value=15 Score=42.76 Aligned_cols=107 Identities=28% Similarity=0.330 Sum_probs=79.4
Q ss_pred HHHHHHHHH---HHHHhcchhHHHHHHHhhHHHHHhhhhhHHhhHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhcccc
Q 005043 569 QFYESKMAA---LIRKNGILEGQLAAALVNREAAEKNFSSVLKSRQEMEKKLADSLKEMELLKEKLAGLELAQEEANSLS 645 (717)
Q Consensus 569 ~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 645 (717)
.-|..-++. ..+.-..+..++++++..|..|.+....+...=+...+++.++..|+..|||-|..++++-.++..
T Consensus 123 ~q~~~~~~eL~~~k~EL~~lr~e~~~~~~~k~~A~~~aeea~~~a~~~~~kve~L~~Ei~~lke~l~~~~~a~~eAee-- 200 (522)
T PF05701_consen 123 EQYASAVAELDSVKQELEKLRQELASALDAKNAALKQAEEAVSAAEENEEKVEELSKEIIALKESLESAKLAHIEAEE-- 200 (522)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--
Confidence 455555544 455667889999999999999999999999999999999999999999999988887666554442
Q ss_pred cccccCCccch--hhHHHHHHHHHHHHHHhhhhccch
Q 005043 646 NIVHSDNVRLE--HDVAFLKAVLDDTQKELHSTRGVL 680 (717)
Q Consensus 646 ~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~ 680 (717)
|--++.++ -|...++.-|+..+++|..-+.-+
T Consensus 201 ---e~~~~~~~~~~~~~~~~~~leeae~~l~~L~~e~ 234 (522)
T PF05701_consen 201 ---ERIEIAAEREQDAEEWEKELEEAEEELEELKEEL 234 (522)
T ss_pred ---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 22223322 345566666777777777666655
No 235
>PF10212 TTKRSYEDQ: Predicted coiled-coil domain-containing protein; InterPro: IPR019348 This entry represents a C-terminal 500 residue region, which contains a conserved TTKRSYEDQ motif. It is found in a family of coiled-coil domain-containing proteins that are conserved from nematodes to humans. These proteins also contain an N-terminal domain with a KLRAQ motif (IPR019343 from INTERPRO). The function of these proteins is not known.
Probab=68.96 E-value=17 Score=41.52 Aligned_cols=73 Identities=16% Similarity=0.260 Sum_probs=55.1
Q ss_pred chHHHHHHHHHHHHHHHhcchhHHHHHHHhhHHHHHhhhhhHHhhHHHHHHHHHHHHHHHHHHHHHHhhhhhh
Q 005043 565 SSIYQFYESKMAALIRKNGILEGQLAAALVNREAAEKNFSSVLKSRQEMEKKLADSLKEMELLKEKLAGLELA 637 (717)
Q Consensus 565 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 637 (717)
..|.-+|..+|..|..+....+.....--++=++.-++|..+.+.|+.++..|..+...+..|++.|..-++-
T Consensus 412 ~LIk~~Y~~RI~eLt~qlQ~adSKa~~f~~Ec~aL~~rL~~aE~ek~~l~eeL~~a~~~i~~LqDEL~TTr~N 484 (518)
T PF10212_consen 412 QLIKSYYMSRIEELTSQLQHADSKAVHFYAECRALQKRLESAEKEKESLEEELKEANQNISRLQDELETTRRN 484 (518)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 4567899999999988888777777777777777777777777777777777777777777777766665543
No 236
>KOG0249 consensus LAR-interacting protein and related proteins [General function prediction only]
Probab=68.57 E-value=20 Score=42.02 Aligned_cols=103 Identities=25% Similarity=0.265 Sum_probs=59.9
Q ss_pred HHHHHHHHHHHhcchhHHHHHHHh--hHHHHHh----hhhhHHhhHHHHHHHHHHHHHHHHHHHHHHhhhhhhh--hhhc
Q 005043 571 YESKMAALIRKNGILEGQLAAALV--NREAAEK----NFSSVLKSRQEMEKKLADSLKEMELLKEKLAGLELAQ--EEAN 642 (717)
Q Consensus 571 ~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~e~----~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~--~~~~ 642 (717)
-+.|..++-++-+.+|.+|.++++ ..+++|- .+..+++-++.++.....+.|=.+.+.|+-+.+++|- |+-|
T Consensus 110 ~eekn~slqerLelaE~~l~qs~rae~lpeveael~qr~~al~~aee~~~~~eer~~kl~~~~qe~naeL~rarqreemn 189 (916)
T KOG0249|consen 110 NEEKNRSLQERLELAEPKLQQSLRAETLPEVEAELAQRNAALTKAEEHSGNIEERTRKLEEQLEELNAELQRARQREKMN 189 (916)
T ss_pred hHHhhhhhhHHHHHhhHhhHhHHhhhhhhhhHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 456777888888888888888776 2233333 3444555556555555555555555666667776664 3333
Q ss_pred c-----cccccc------c--------CCccchhhHHHHHHHHHHHHHHh
Q 005043 643 S-----LSNIVH------S--------DNVRLEHDVAFLKAVLDDTQKEL 673 (717)
Q Consensus 643 ~-----~~~~~~------~--------~~~~~~~~~~~~~~~~~~~~~~~ 673 (717)
- |+-.|- . |-=||+.+++=+|-.|+.++++=
T Consensus 190 eeh~~rlsdtvdErlqlhlkermaAle~kn~L~~e~~s~kk~l~~~~~~k 239 (916)
T KOG0249|consen 190 EEHNKRLSDTVDERLQLHLKERMAALEDKNRLEQELESVKKQLEEMRHDK 239 (916)
T ss_pred hhhccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 2 333332 1 11256666666777776666543
No 237
>PF05010 TACC: Transforming acidic coiled-coil-containing protein (TACC); InterPro: IPR007707 This family contains the proteins TACC 1, 2 and 3, found concentrated in the centrosomes of eukaryotes which may play a conserved role in organising centrosomal microtubules. The human TACC proteins have been linked to cancer and TACC2 has been identified as a possible tumour suppressor (AZU-1) [].
Probab=68.52 E-value=37 Score=34.41 Aligned_cols=111 Identities=27% Similarity=0.368 Sum_probs=64.3
Q ss_pred chHHHHHHHHHHHHHHHhc----chhHHHHHHHhhHHHH-------HhhhhhHHhhHHHHHHHHHHHHHHHHHHHHHHhh
Q 005043 565 SSIYQFYESKMAALIRKNG----ILEGQLAAALVNREAA-------EKNFSSVLKSRQEMEKKLADSLKEMELLKEKLAG 633 (717)
Q Consensus 565 ~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~-------e~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 633 (717)
..|..-||.-|+++|.... ..+.++..++..|++| |++++.+++..+.++.-+....+--|.||..+..
T Consensus 43 ~~i~~e~Ek~i~~~i~e~~~~~~~~~~~i~~~~~erdq~~~dL~s~E~sfsdl~~ryek~K~vi~~~k~NEE~Lkk~~~e 122 (207)
T PF05010_consen 43 RKIMEEYEKTIAQMIEEKQKQKELSEAEIQKLLKERDQAYADLNSLEKSFSDLHKRYEKQKEVIEGYKKNEETLKKCIEE 122 (207)
T ss_pred HHHHHHHHHHHHHHHHHHHhhHHhHHHHHHHHHhhHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Confidence 4577889999988886553 3445555666666655 5555555555555555444444444444444422
Q ss_pred hh---------------hhh---hhhcccccccccCCcc--chhhHHHHHHHHHHHHHHhhhhccch
Q 005043 634 LE---------------LAQ---EEANSLSNIVHSDNVR--LEHDVAFLKAVLDDTQKELHSTRGVL 680 (717)
Q Consensus 634 ~~---------------~~~---~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~ 680 (717)
.+ -|. +.||. .-+.|| .+.|++=|+|.|.-.|..++|.=.-|
T Consensus 123 y~~~l~~~eqry~aLK~hAeekL~~ANe-----ei~~v~~~~~~e~~aLqa~lkk~e~~~~SLe~~L 184 (207)
T PF05010_consen 123 YEERLKKEEQRYQALKAHAEEKLEKANE-----EIAQVRSKHQAELLALQASLKKEEMKVQSLEESL 184 (207)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 11 011 12222 112333 34679999999999999999865433
No 238
>PLN02939 transferase, transferring glycosyl groups
Probab=68.38 E-value=17 Score=44.87 Aligned_cols=25 Identities=32% Similarity=0.593 Sum_probs=20.4
Q ss_pred cccccCCccchhhHHHHHHHHHHHH
Q 005043 646 NIVHSDNVRLEHDVAFLKAVLDDTQ 670 (717)
Q Consensus 646 ~~~~~~~~~~~~~~~~~~~~~~~~~ 670 (717)
+++-.+|+-|-.|+.|||+-|++..
T Consensus 229 ~~~~~~~~~~~~~~~~~~~~~~~~~ 253 (977)
T PLN02939 229 DVLKEENMLLKDDIQFLKAELIEVA 253 (977)
T ss_pred HHHHHHhHHHHHHHHHHHHHHHHHH
Confidence 4566789999999999999987643
No 239
>cd00089 HR1 Protein kinase C-related kinase homology region 1 domain; also known as the ACC (antiparallel coiled-coil) finger domain or Rho-binding domain. Found in vertebrate PRK1 and yeast PKC1 protein kinases C; those found in rhophilin bind RhoGTP; those in PRK1 bind RhoA and RhoB. Rho family members function as molecular switches, cycling between inactive and active forms, controlling a variety of cellular processes. HR1 repeats often occur in tandem repeat arrangments, seperated by a short linker region.
Probab=68.31 E-value=17 Score=30.15 Aligned_cols=55 Identities=33% Similarity=0.335 Sum_probs=43.6
Q ss_pred HhcchhHHHHHHHhhHHHHHhhhhh-----HHhhHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 005043 581 KNGILEGQLAAALVNREAAEKNFSS-----VLKSRQEMEKKLADSLKEMELLKEKLAGLE 635 (717)
Q Consensus 581 ~~~~~~~~~~~~~~~~~~~e~~~~~-----~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 635 (717)
+-..|+.+|.--++-||.|||=+.. ..+++.+++.+|.++...+++||..|...+
T Consensus 10 ~l~~L~~~l~~E~~~r~Gaenm~~~~~~~~~~~~~~~~~~~l~es~~ki~~Lr~~L~k~~ 69 (72)
T cd00089 10 RLERLEKELSIELKVKEGAENLLRLYSDEKKKKLLAEAEQMLRESKQKLELLKMQLEKLK 69 (72)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456777888888889999984432 236788999999999999999999887654
No 240
>PF01576 Myosin_tail_1: Myosin tail; InterPro: IPR002928 Muscle contraction is caused by sliding between the thick and thin filaments of the myofibril. Myosin is a major component of thick filaments and exists as a hexamer of 2 heavy chains [], 2 alkali light chains, and 2 regulatory light chains. The heavy chain can be subdivided into the N-terminal globular head and the C-terminal coiled-coil rod-like tail, although some forms have a globular region in their C-terminal. There are many cell-specific isoforms of myosin heavy chains, coded for by a multi-gene family []. Myosin interacts with actin to convert chemical energy, in the form of ATP, to mechanical energy []. The 3-D structure of the head portion of myosin has been determined [] and a model for actin-myosin complex has been constructed []. This family consists of the coiled-coil myosin heavy chain tail region. The coiled-coil is composed of the tail from two molecules of myosin. These can then assemble into the macromolecular thick filament []. The coiled-coil region provides the structural backbone of the thick filament [].; GO: 0003774 motor activity, 0016459 myosin complex; PDB: 2LNK_C 3ZWH_Q.
Probab=68.27 E-value=1.7 Score=53.52 Aligned_cols=126 Identities=27% Similarity=0.320 Sum_probs=0.0
Q ss_pred HHHHhcchhHHHHHHHhhHHHHHhhhhhHHhhHHHHHHHHHHHHHHHHHHHHHHhhhhhhh-----------hhhcccc-
Q 005043 578 LIRKNGILEGQLAAALVNREAAEKNFSSVLKSRQEMEKKLADSLKEMELLKEKLAGLELAQ-----------EEANSLS- 645 (717)
Q Consensus 578 ~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~-----------~~~~~~~- 645 (717)
+.+....+..|+.......+.+......+......+++++.....|++.++..+..++++. ++.|.|+
T Consensus 572 ~~k~~kk~q~qlkdlq~~lee~~~~~~~~~~~~~~~e~r~~~l~~elee~~~~~~~a~r~rk~aE~el~e~~~~~~~l~~ 651 (859)
T PF01576_consen 572 AQKQLKKLQAQLKDLQRELEEAQRAREELREQLAVSERRLRALQAELEELREALEQAERARKQAESELDELQERLNELTS 651 (859)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3344445666666666666666666666666667788888888888888888888877776 3333332
Q ss_pred --cccccCCccchhhHHHHHHHHHHHHHHhhhhccchhhccccceeeEE--------------------------Eeehh
Q 005043 646 --NIVHSDNVRLEHDVAFLKAVLDDTQKELHSTRGVLAGERARAFQLQV--------------------------EVFHL 697 (717)
Q Consensus 646 --~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------------------------~~~~~ 697 (717)
+.....--+||.+|+=|.+=||+.+.++.. |.||+|.-+.|+ .|=.|
T Consensus 652 ~~~~l~~~kr~le~~i~~l~~eleE~~~~~~~-----~~ek~kka~~~~~~l~~eL~~Eq~~~~~le~~k~~LE~q~keL 726 (859)
T PF01576_consen 652 QNSSLSEEKRKLEAEIQQLEEELEEEQSEAEA-----AEEKAKKAQAQAAQLAEELRQEQDHNQHLEKEKKALERQVKEL 726 (859)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 233344567999999999999999988763 556666555553 56678
Q ss_pred hhhhhhhcccC
Q 005043 698 KQRLQSLENRA 708 (717)
Q Consensus 698 ~~~~~~~~~~~ 708 (717)
+.||..+|+-+
T Consensus 727 q~rl~e~E~~~ 737 (859)
T PF01576_consen 727 QARLEEAEQSA 737 (859)
T ss_dssp -----------
T ss_pred HHHHHHHHHhh
Confidence 88888887543
No 241
>PLN03215 ascorbic acid mannose pathway regulator 1; Provisional
Probab=68.23 E-value=1.1e+02 Score=33.83 Aligned_cols=138 Identities=9% Similarity=0.030 Sum_probs=71.2
Q ss_pred CCcEEEeeecCCCCCCceeeEEEEECCEEEEEccccCCCCCcCcEEEEEcCCCceEeccC--CCCCCCCC--cccEEEEE
Q 005043 182 TECWSVVEAKGDIPVARSGHTVVRASSVLILFGGEDGKRRKLNDLHMFDLKSLTWLPLHC--TGTGPSPR--SNHVAALY 257 (717)
Q Consensus 182 t~~W~~l~~~g~~P~~R~~hs~~~~~~~Lyv~GG~~~~~~~~~~v~~yD~~t~~W~~l~~--~g~~P~~R--~~~aa~~~ 257 (717)
.+.|+.+. .... ..--++.++|++|++. ....++.+|..- .-+++.+ .+.+..++ ...-.+..
T Consensus 189 ~~~Wt~l~----~~~~-~~~DIi~~kGkfYAvD-------~~G~l~~i~~~l-~i~~v~~~i~~~~~~g~~~~~~yLVEs 255 (373)
T PLN03215 189 GNVLKALK----QMGY-HFSDIIVHKGQTYALD-------SIGIVYWINSDL-EFSRFGTSLDENITDGCWTGDRRFVEC 255 (373)
T ss_pred CCeeeEcc----CCCc-eeeEEEEECCEEEEEc-------CCCeEEEEecCC-ceeeecceecccccCCcccCceeEEEE
Confidence 38999986 2222 3446788999999982 235577777421 1122211 01111111 12234455
Q ss_pred CCcEEEEEcCCCCC--------------CCCCeEEEEECCCCcEEEeecCCCCCC---CCcceEEEE------ECCEEEE
Q 005043 258 DDKNLLIFGGSSKS--------------KTLNDLYSLDFETMIWTRIKIRGFHPS---PRAGCCGVL------CGTKWYI 314 (717)
Q Consensus 258 ~~~~lyV~GG~~~~--------------~~~ndv~~yd~~t~~W~~v~~~g~~P~---~R~~~sav~------~~~~IyV 314 (717)
.|+ |+++..+... ...-.|+++|.+...|.++...|..-. .....++.. -+|.||+
T Consensus 256 ~Gd-LLmV~R~~~~~~~~~~~~~~~~~~t~~f~VfklD~~~~~WveV~sLgd~aLFlG~~~s~sv~a~e~pG~k~NcIYF 334 (373)
T PLN03215 256 CGE-LYIVERLPKESTWKRKADGFEYSRTVGFKVYKFDDELAKWMEVKTLGDNAFVMATDTCFSVLAHEFYGCLPNSIYF 334 (373)
T ss_pred CCE-EEEEEEEccCcccccccccccccceeEEEEEEEcCCCCcEEEecccCCeEEEEECCccEEEecCCCCCccCCEEEE
Confidence 666 7777664211 011246777888999999987643210 011111111 1467777
Q ss_pred EecCCCCCccCeEEEEECCCCcEEEe
Q 005043 315 AGGGSRKKRHAETLIFDILKGEWSVA 340 (717)
Q Consensus 315 ~GG~~~~~~~~dv~~yD~~t~~W~~l 340 (717)
.... ...+||+...+=..+
T Consensus 335 tdd~-------~~~v~~~~dg~~~~~ 353 (373)
T PLN03215 335 TEDT-------MPKVFKLDNGNGSSI 353 (373)
T ss_pred ECCC-------cceEEECCCCCccce
Confidence 7542 345788777664443
No 242
>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association [].
Probab=68.15 E-value=30 Score=37.63 Aligned_cols=18 Identities=33% Similarity=0.303 Sum_probs=14.9
Q ss_pred hhhHHHHHHHHHHHHHHh
Q 005043 656 EHDVAFLKAVLDDTQKEL 673 (717)
Q Consensus 656 ~~~~~~~~~~~~~~~~~~ 673 (717)
..||.=||+-++.+|+-.
T Consensus 275 ~~Ev~~Lk~~~~~Le~~~ 292 (325)
T PF08317_consen 275 RSEVKRLKAKVDALEKLT 292 (325)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 578999999999998843
No 243
>PF06637 PV-1: PV-1 protein (PLVAP); InterPro: IPR009538 This family consists of several PV-1 (PLVAP) proteins, which seem to be specific to mammals. PV-1 is a novel protein component of the endothelial fenestral and stomatal diaphragms []. The function of this family is unknown.
Probab=68.12 E-value=19 Score=39.20 Aligned_cols=32 Identities=28% Similarity=0.279 Sum_probs=17.6
Q ss_pred HHHHHHHHHHHHhcch-------hHHHHHHHhhHHHHHh
Q 005043 570 FYESKMAALIRKNGIL-------EGQLAAALVNREAAEK 601 (717)
Q Consensus 570 ~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~e~ 601 (717)
....+|...-|+|+.| |.-|.|++..||.|+|
T Consensus 289 ~Lr~~I~~VarENs~LqrQKle~e~~l~a~qeakek~~K 327 (442)
T PF06637_consen 289 SLRAGIERVARENSDLQRQKLEAEQGLQASQEAKEKAGK 327 (442)
T ss_pred HHhhhHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344455445555544 4556666666666666
No 244
>PRK13729 conjugal transfer pilus assembly protein TraB; Provisional
Probab=68.09 E-value=12 Score=42.32 Aligned_cols=22 Identities=14% Similarity=0.283 Sum_probs=10.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 005043 610 RQEMEKKLADSLKEMELLKEKL 631 (717)
Q Consensus 610 ~~~~~~~~~~~~~~~~~l~~~~ 631 (717)
++++|.||.+...|.+.||+++
T Consensus 99 ~~dle~KIkeLEaE~~~Lk~Ql 120 (475)
T PRK13729 99 RGDDQRRIEKLGQDNAALAEQV 120 (475)
T ss_pred hhhHHHHHHHHHHHHHHHHHHH
Confidence 3344444444445555555554
No 245
>COG1579 Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only]
Probab=67.97 E-value=30 Score=35.85 Aligned_cols=120 Identities=19% Similarity=0.212 Sum_probs=67.0
Q ss_pred HHHHHHHHHHHHHhcchhHHHHHHHhhHHHHHhhhhhHHhhHHHHHHHHHHHHHHHHHHHHHHhhhhhhh------hhhc
Q 005043 569 QFYESKMAALIRKNGILEGQLAAALVNREAAEKNFSSVLKSRQEMEKKLADSLKEMELLKEKLAGLELAQ------EEAN 642 (717)
Q Consensus 569 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~------~~~~ 642 (717)
|.+-.++..+-.+-.-...-|.+|.+.+|++-|++.-+-.....++.++.....|+-.+++|++.+|.++ .+.+
T Consensus 13 q~lD~e~~rl~~~~~~~~~~l~k~~~e~e~~~~~~~~~~~e~e~le~qv~~~e~ei~~~r~r~~~~e~kl~~v~~~~e~~ 92 (239)
T COG1579 13 QKLDLEKDRLEPRIKEIRKALKKAKAELEALNKALEALEIELEDLENQVSQLESEIQEIRERIKRAEEKLSAVKDERELR 92 (239)
T ss_pred HHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccHHHHH
Confidence 3444444444444444555677777777777777777777777777777777777777777777776655 2222
Q ss_pred ccc---cccccCCccchhhH-------HHHHHHHHHHHHHhhhhccchhhccccce
Q 005043 643 SLS---NIVHSDNVRLEHDV-------AFLKAVLDDTQKELHSTRGVLAGERARAF 688 (717)
Q Consensus 643 ~~~---~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 688 (717)
.|. .+--..-+.||+++ .=|..-+++.+.++-+++.-++.+|.+.+
T Consensus 93 aL~~E~~~ak~r~~~le~el~~l~~~~~~l~~~i~~l~~~~~~~e~~~~e~~~~~e 148 (239)
T COG1579 93 ALNIEIQIAKERINSLEDELAELMEEIEKLEKEIEDLKERLERLEKNLAEAEARLE 148 (239)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 211 11111222344443 33444455555556666666666666543
No 246
>TIGR02338 gimC_beta prefoldin, beta subunit, archaeal. Chaperonins are cytosolic, ATP-dependent molecular chaperones, with a conserved toroidal architecture, that assist in the folding of nascent and/or denatured polypeptide chains. The group I chaperonin system consists of GroEL and GroES, and is found (usually) in bacteria and organelles of bacterial origin. The group II chaperonin system, called the thermosome in Archaea and TRiC or CCT in the Eukaryota, is structurally similar but only distantly related. Prefoldin, also called GimC, is a complex in Archaea and Eukaryota, that works with group II chaperonins. Members of this protein family are the archaeal clade of the beta class of prefoldin subunit. Closely related, but outside the scope of this family are the eukaryotic beta-class prefoldin subunits, Gim-1,3,4 and 6. The alpha class prefoldin subunits are more distantly related.
Probab=67.69 E-value=37 Score=30.61 Aligned_cols=34 Identities=24% Similarity=0.247 Sum_probs=28.1
Q ss_pred HHHHHHHHHHHHHHhcchhHHHHHHHhhHHHHHh
Q 005043 568 YQFYESKMAALIRKNGILEGQLAAALVNREAAEK 601 (717)
Q Consensus 568 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~ 601 (717)
||.+..++..+...-..||.|+..+..-.++.++
T Consensus 12 ~q~~q~~~~~l~~q~~~le~~~~E~~~v~~eL~~ 45 (110)
T TIGR02338 12 LQQLQQQLQAVATQKQQVEAQLKEAEKALEELER 45 (110)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 5778888888888888999988888877777776
No 247
>KOG2391 consensus Vacuolar sorting protein/ubiquitin receptor VPS23 [Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport]
Probab=67.29 E-value=33 Score=36.95 Aligned_cols=89 Identities=17% Similarity=0.210 Sum_probs=56.6
Q ss_pred chHHHHHHHHHHHHHHHh-cchhHHHHHHHhhHHHHHhhhhhHHhhHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhcc
Q 005043 565 SSIYQFYESKMAALIRKN-GILEGQLAAALVNREAAEKNFSSVLKSRQEMEKKLADSLKEMELLKEKLAGLELAQEEANS 643 (717)
Q Consensus 565 ~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 643 (717)
..+.+.++.|+-...++- +.+-...++.-+-.|++-+-.+.+-..+|.+|..+..+.+..+.||.|++. |||++.|
T Consensus 209 asvisa~~eklR~r~eeeme~~~aeq~slkRt~EeL~~G~~kL~~~~etLEqq~~~L~~niDIL~~k~~e---al~~~~n 285 (365)
T KOG2391|consen 209 ASVISAVREKLRRRREEEMERLQAEQESLKRTEEELNIGKQKLVAMKETLEQQLQSLQKNIDILKSKVRE---ALEKAEN 285 (365)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHhhHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHH---HHhhhcc
Confidence 356778888776543321 222222233334445555566666677888888888888888889999876 9999988
Q ss_pred cccccccCCccchh
Q 005043 644 LSNIVHSDNVRLEH 657 (717)
Q Consensus 644 ~~~~~~~~~~~~~~ 657 (717)
|-++ --|+.+.+.
T Consensus 286 ~~~~-~~D~~~~~~ 298 (365)
T KOG2391|consen 286 LEAL-DIDEAIECT 298 (365)
T ss_pred CcCC-Cchhhhhcc
Confidence 5544 445555543
No 248
>PF12795 MscS_porin: Mechanosensitive ion channel porin domain
Probab=67.26 E-value=15 Score=38.13 Aligned_cols=125 Identities=22% Similarity=0.250 Sum_probs=84.4
Q ss_pred cchhHHHHHHHhhHHHHHhhhhhHHh---hHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhcccccccccCCccchhhH
Q 005043 583 GILEGQLAAALVNREAAEKNFSSVLK---SRQEMEKKLADSLKEMELLKEKLAGLELAQEEANSLSNIVHSDNVRLEHDV 659 (717)
Q Consensus 583 ~~~~~~~~~~~~~~~~~e~~~~~~~~---~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 659 (717)
...+..-.+++...++|-..|..+=+ .-.++++.+.+.-+++..|+++|+.+... ........-.-.--.||-.+
T Consensus 10 ~~~~~~~~~~i~~l~~al~~L~~~~~~~~~~~~~~~~i~~aP~~~~~l~~~l~~l~~~--~~~~~~~~~~~s~~eLeq~l 87 (240)
T PF12795_consen 10 KLDEPEQKALIQDLQQALSFLDEIKKQKKRAAEYQKQIDQAPKEIRELQKELEALKSQ--DAPSKEILANLSLEELEQRL 87 (240)
T ss_pred CCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhhhcc--ccccccCcccCCHHHHHHHH
Confidence 33444444444555555554444422 23456677788888888888888777544 22222222222334577888
Q ss_pred HHHHHHHHHHHHHhhhhccchhhccccceeeEEEeehhhhhhhhhcccCC
Q 005043 660 AFLKAVLDDTQKELHSTRGVLAGERARAFQLQVEVFHLKQRLQSLENRAP 709 (717)
Q Consensus 660 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 709 (717)
.=..+-|.+.|..|-.--.-|+.=++|.=.+|-.+...++||+.++++-.
T Consensus 88 ~~~~~~L~~~q~~l~~~~~~l~~~~~~p~~aq~~l~~~~~~l~ei~~~L~ 137 (240)
T PF12795_consen 88 SQEQAQLQELQEQLQQENSQLIEIQTRPERAQQQLSEARQRLQEIRNQLQ 137 (240)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHh
Confidence 88888888999998888888888888888888899999999999987743
No 249
>TIGR03752 conj_TIGR03752 integrating conjugative element protein, PFL_4705 family. Members of this protein family are found occasionally on plasmids such as the Pseudomonas putida toluene catabolic TOL plasmid pWWO_p085. Usually, however, they are found on the bacterial main chromosome in regions flanked by markers of conjugative transfer and/or transposition.
Probab=67.24 E-value=29 Score=39.30 Aligned_cols=67 Identities=18% Similarity=0.277 Sum_probs=47.4
Q ss_pred HHHHHHHHHHHHHhcchhHHHHHHHhhHHHHHhhhhhHHhh-HHHHHHHHHHHHHHHHHHHHHHhhhh
Q 005043 569 QFYESKMAALIRKNGILEGQLAAALVNREAAEKNFSSVLKS-RQEMEKKLADSLKEMELLKEKLAGLE 635 (717)
Q Consensus 569 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~-~~~~~~~~~~~~~~~~~l~~~~~~~~ 635 (717)
...+++++.+++.|..|..+.+.-.+-......+++.++++ |++++++......|+..|+..|..++
T Consensus 69 k~~r~~~~~l~~~N~~l~~eN~~L~~r~~~id~~i~~av~~~~~~~~~~~~ql~~~~~~~~~~l~~l~ 136 (472)
T TIGR03752 69 KELRKRLAKLISENEALKAENERLQKREQSIDQQIQQAVQSETQELTKEIEQLKSERQQLQGLIDQLQ 136 (472)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46788899999999988888776666566666777777755 66666666666666666666665553
No 250
>smart00787 Spc7 Spc7 kinetochore protein. This domain is found in cell division proteins which are required for kinetochore-spindle association.
Probab=67.11 E-value=46 Score=35.97 Aligned_cols=17 Identities=24% Similarity=0.083 Sum_probs=14.6
Q ss_pred hhhHHHHHHHHHHHHHH
Q 005043 656 EHDVAFLKAVLDDTQKE 672 (717)
Q Consensus 656 ~~~~~~~~~~~~~~~~~ 672 (717)
-+||.=|||.++-+|+.
T Consensus 270 ~~Ei~~Lk~~~~~Le~l 286 (312)
T smart00787 270 FKEIEKLKEQLKLLQSL 286 (312)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 37899999999999984
No 251
>PF13088 BNR_2: BNR repeat-like domain; PDB: 2F11_A 2F0Z_A 1VCU_B 2F25_B 1SO7_A 2F29_A 1SNT_A 2F13_A 2F28_A 2F27_A ....
Probab=67.02 E-value=1.6e+02 Score=30.38 Aligned_cols=205 Identities=12% Similarity=0.106 Sum_probs=96.1
Q ss_pred CCEEEEEe--ccCCCC-CCceEEEEEECC-CCcEEEeeecC-----CCCCCceeeEEEEECCEEEEEccccCCCCCcCcE
Q 005043 156 GKKVLLVG--GKTDSG-SDRVSVWTFDTE-TECWSVVEAKG-----DIPVARSGHTVVRASSVLILFGGEDGKRRKLNDL 226 (717)
Q Consensus 156 ~~~Iyv~G--G~~~~~-~~~~~v~~yD~~-t~~W~~l~~~g-----~~P~~R~~hs~~~~~~~Lyv~GG~~~~~~~~~~v 226 (717)
+++|++|. +..... ....-.+.+..+ ..+|+...... ..+.+-.+..+..-++.+++. .+.........+
T Consensus 58 ~g~l~l~~~~~~~~~~~~~~~~~~~~S~D~G~TWs~~~~l~~~~~~~~~~~~~~~~i~~~~G~l~~~-~~~~~~~~~~~~ 136 (275)
T PF13088_consen 58 DGRLWLFYSAGSSGGGWSGSRIYYSRSTDGGKTWSEPTDLPPGWFGNFSGPGRGPPIQLPDGRLIAP-YYHESGGSFSAF 136 (275)
T ss_dssp TSEEEEEEEEEETTESCCTCEEEEEEESSTTSS-EEEEEEHHHCCCSCEECSEEEEEEECTTEEEEE-EEEESSCEEEEE
T ss_pred CCCEEEEEEEccCCCCCCceeEEEEEECCCCCCCCCccccccccccceeccceeeeeEecCCCEEEE-EeeccccCcceE
Confidence 78888886 322211 112222355554 46799875211 111222222344457788877 222211112334
Q ss_pred EEEEcC-CCceEeccCCCCCCCCCccc-EEEEECCcEEEEEcCCCCCCCCCeEEEEECC-CCcEEEeecCCCCCCCCcce
Q 005043 227 HMFDLK-SLTWLPLHCTGTGPSPRSNH-VAALYDDKNLLIFGGSSKSKTLNDLYSLDFE-TMIWTRIKIRGFHPSPRAGC 303 (717)
Q Consensus 227 ~~yD~~-t~~W~~l~~~g~~P~~R~~~-aa~~~~~~~lyV~GG~~~~~~~ndv~~yd~~-t~~W~~v~~~g~~P~~R~~~ 303 (717)
..|... ..+|+...... +...... +.+...+..|+++--..... .-.+.+..+ ..+|+..... ..|.+....
T Consensus 137 ~~~S~D~G~tW~~~~~~~--~~~~~~e~~~~~~~dG~l~~~~R~~~~~--~~~~~~S~D~G~TWs~~~~~-~~~~~~~~~ 211 (275)
T PF13088_consen 137 VYYSDDGGKTWSSGSPIP--DGQGECEPSIVELPDGRLLAVFRTEGND--DIYISRSTDGGRTWSPPQPT-NLPNPNSSI 211 (275)
T ss_dssp EEEESSTTSSEEEEEECE--CSEEEEEEEEEEETTSEEEEEEEECSST--EEEEEEESSTTSS-EEEEEE-ECSSCCEEE
T ss_pred EEEeCCCCceeecccccc--ccCCcceeEEEECCCCcEEEEEEccCCC--cEEEEEECCCCCcCCCceec-ccCcccCCc
Confidence 444444 45698876221 2212222 33334555577665432111 223344443 5679986532 235555555
Q ss_pred EEEEE-CCEEEEEecCCCCCccCeEEEEECCCCcEEEeecCCCCCCCCCcceEEEEEEeCCCcEEEE
Q 005043 304 CGVLC-GTKWYIAGGGSRKKRHAETLIFDILKGEWSVAITSPSSSVTSNKGFTLVLVQHKEKDFLVA 369 (717)
Q Consensus 304 sav~~-~~~IyV~GG~~~~~~~~dv~~yD~~t~~W~~l~~~p~~~~~~r~g~s~v~v~~~~~~~I~v 369 (717)
.++.+ +++++++.........-.+++-.....+|......... +....+|+..+... ++.|+|
T Consensus 212 ~~~~~~~g~~~~~~~~~~~r~~l~l~~S~D~g~tW~~~~~i~~~-~~~~~~Y~~~~~~~--dg~l~i 275 (275)
T PF13088_consen 212 SLVRLSDGRLLLVYNNPDGRSNLSLYVSEDGGKTWSRPKTIDDG-PNGDSGYPSLTQLP--DGKLYI 275 (275)
T ss_dssp EEEECTTSEEEEEEECSSTSEEEEEEEECTTCEEEEEEEEEEEE-E-CCEEEEEEEEEE--TTEEEE
T ss_pred eEEEcCCCCEEEEEECCCCCCceEEEEEeCCCCcCCccEEEeCC-CCCcEECCeeEEeC--CCcCCC
Confidence 54554 57888888732222222333334447899875432211 12446677666653 456764
No 252
>PF10212 TTKRSYEDQ: Predicted coiled-coil domain-containing protein; InterPro: IPR019348 This entry represents a C-terminal 500 residue region, which contains a conserved TTKRSYEDQ motif. It is found in a family of coiled-coil domain-containing proteins that are conserved from nematodes to humans. These proteins also contain an N-terminal domain with a KLRAQ motif (IPR019343 from INTERPRO). The function of these proteins is not known.
Probab=66.62 E-value=37 Score=38.80 Aligned_cols=67 Identities=19% Similarity=0.293 Sum_probs=54.5
Q ss_pred HHHHHHHHHHHHHhcchhHHHHHHHhhHHHHHhhhhhHHhhHHHHHHHHHHHHHHHHH----HHHHHhhhh
Q 005043 569 QFYESKMAALIRKNGILEGQLAAALVNREAAEKNFSSVLKSRQEMEKKLADSLKEMEL----LKEKLAGLE 635 (717)
Q Consensus 569 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~----l~~~~~~~~ 635 (717)
|..+.|...+-.....|--+|+.|...|+..+..|.++....+.+++.|.-+.+-+|. |=|.|+.+-
T Consensus 430 Q~adSKa~~f~~Ec~aL~~rL~~aE~ek~~l~eeL~~a~~~i~~LqDEL~TTr~NYE~QLs~MSEHLasmN 500 (518)
T PF10212_consen 430 QHADSKAVHFYAECRALQKRLESAEKEKESLEEELKEANQNISRLQDELETTRRNYEEQLSMMSEHLASMN 500 (518)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHH
Confidence 6777777788888888888899888888888888888888888888888887777765 667776653
No 253
>KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown]
Probab=66.44 E-value=2.1e+02 Score=31.45 Aligned_cols=146 Identities=15% Similarity=0.207 Sum_probs=76.0
Q ss_pred CCEEEEEcccCCCCCcccEEEEEcCCCceEEccccccCCCCCCCCCCCcccceEEEEECCEEEEEeccCCCCCCceEEEE
Q 005043 98 GNKMIVVGGESGNGLLDDVQVLNFDRFSWTAASSKLYLSPSSLPLKIPACRGHSLISWGKKVLLVGGKTDSGSDRVSVWT 177 (717)
Q Consensus 98 ~~~lyV~GG~~~~~~~~~v~~yd~~t~~W~~l~~~~~~~~~~~~~~~p~r~~hs~v~~~~~Iyv~GG~~~~~~~~~~v~~ 177 (717)
++.+.+-||.++. .++++..+..|--.-+. ..-.--.+...+++.+++.||+.+ .|.+
T Consensus 75 ~~~l~aTGGgDD~-----AflW~~~~ge~~~eltg-----------HKDSVt~~~FshdgtlLATGdmsG------~v~v 132 (399)
T KOG0296|consen 75 NNNLVATGGGDDL-----AFLWDISTGEFAGELTG-----------HKDSVTCCSFSHDGTLLATGDMSG------KVLV 132 (399)
T ss_pred CCceEEecCCCce-----EEEEEccCCcceeEecC-----------CCCceEEEEEccCceEEEecCCCc------cEEE
Confidence 5678888887643 58888888887544321 111112334445788888888854 3444
Q ss_pred EEC--CCCcEEEeeecCCCCCCceeeEEEEE-CCEEEEEccccCCCCCcCcEEEEEcCCCceEeccCCCCCCCCCcccEE
Q 005043 178 FDT--ETECWSVVEAKGDIPVARSGHTVVRA-SSVLILFGGEDGKRRKLNDLHMFDLKSLTWLPLHCTGTGPSPRSNHVA 254 (717)
Q Consensus 178 yD~--~t~~W~~l~~~g~~P~~R~~hs~~~~-~~~Lyv~GG~~~~~~~~~~v~~yD~~t~~W~~l~~~g~~P~~R~~~aa 254 (717)
|.. ....|.......++- -+..+ ...|+++|-.+ ..+|+|.+.+..-.++- ..+..+....-
T Consensus 133 ~~~stg~~~~~~~~e~~die------Wl~WHp~a~illAG~~D------GsvWmw~ip~~~~~kv~---~Gh~~~ct~G~ 197 (399)
T KOG0296|consen 133 FKVSTGGEQWKLDQEVEDIE------WLKWHPRAHILLAGSTD------GSVWMWQIPSQALCKVM---SGHNSPCTCGE 197 (399)
T ss_pred EEcccCceEEEeecccCceE------EEEecccccEEEeecCC------CcEEEEECCCcceeeEe---cCCCCCccccc
Confidence 544 445576642211211 11112 23566666433 34899988775333332 11222323223
Q ss_pred EEECCcEEEEEcCCCCCCCCCeEEEEECCCCc
Q 005043 255 ALYDDKNLLIFGGSSKSKTLNDLYSLDFETMI 286 (717)
Q Consensus 255 ~~~~~~~lyV~GG~~~~~~~ndv~~yd~~t~~ 286 (717)
..-+++ ..+.|-.+ ..|.+||+.+.+
T Consensus 198 f~pdGK-r~~tgy~d-----gti~~Wn~ktg~ 223 (399)
T KOG0296|consen 198 FIPDGK-RILTGYDD-----GTIIVWNPKTGQ 223 (399)
T ss_pred ccCCCc-eEEEEecC-----ceEEEEecCCCc
Confidence 333455 33333222 247888887764
No 254
>KOG0249 consensus LAR-interacting protein and related proteins [General function prediction only]
Probab=66.43 E-value=24 Score=41.40 Aligned_cols=84 Identities=15% Similarity=0.125 Sum_probs=58.6
Q ss_pred HHHHHHHHhcchhHHHHHHHhhHHHHHhhhhhHHhhHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhcccccccccCCc
Q 005043 574 KMAALIRKNGILEGQLAAALVNREAAEKNFSSVLKSRQEMEKKLADSLKEMELLKEKLAGLELAQEEANSLSNIVHSDNV 653 (717)
Q Consensus 574 ~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 653 (717)
+-+.|.|-+-.+|--++-+...-++++..|+.+++.|+++..+..-+.+|.+-+|..|+.++++.|.--+ |+=
T Consensus 175 ~naeL~rarqreemneeh~~rlsdtvdErlqlhlkermaAle~kn~L~~e~~s~kk~l~~~~~~k~rl~~-------d~E 247 (916)
T KOG0249|consen 175 LNAELQRARQREKMNEEHNKRLSDTVDERLQLHLKERMAALEDKNRLEQELESVKKQLEEMRHDKDKLRT-------DIE 247 (916)
T ss_pred HHHHHHHHHHHHHhhhhhccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh-------hHH
Confidence 3444555555555555555555566777889999999999999999999999999999999988876544 333
Q ss_pred cchhhHHHHHH
Q 005043 654 RLEHDVAFLKA 664 (717)
Q Consensus 654 ~~~~~~~~~~~ 664 (717)
+|=-+++-|++
T Consensus 248 ~Lr~e~~qL~~ 258 (916)
T KOG0249|consen 248 DLRGELDQLRR 258 (916)
T ss_pred HHHHHHHHHHH
Confidence 44444555553
No 255
>PF00038 Filament: Intermediate filament protein; InterPro: IPR016044 Intermediate filaments (IF) [, , ] are proteins which are primordial components of the cytoskeleton and the nuclear envelope. They generally form filamentous structures 8 to 14 nm wide. IF proteins are members of a very large multigene family of proteins which has been subdivided in five major subgroups: Type I: Acidic cytokeratins. Type II: Basic cytokeratins. Type III: Vimentin, desmin, glial fibrillary acidic protein (GFAP), peripherin, and plasticin. Type IV: Neurofilaments L, H and M, alpha-internexin and nestin. Type V: Nuclear lamins A, B1, B2 and C. All IF proteins are structurally similar in that they consist of: a central rod domain comprising some 300 to 350 residues which is arranged in coiled-coiled alpha-helices, with at least two short characteristic interruptions; a N-terminal non-helical domain (head) of variable length; and a C-terminal domain (tail) which is also non-helical, and which shows extreme length variation between different IF proteins. While IF proteins are evolutionary and structurally related, they have limited sequence homologies except in several regions of the rod domain. This entry represents the central rod domain found in IF proteins.; PDB: 3TNU_B 3KLT_D 1GK4_F 3TRT_A 3G1E_A 3UF1_C 1GK6_B 1GK7_A 3TYY_B 3V4W_A ....
Probab=66.18 E-value=64 Score=34.51 Aligned_cols=17 Identities=35% Similarity=0.618 Sum_probs=7.6
Q ss_pred HHHhhhhccchhhcccc
Q 005043 670 QKELHSTRGVLAGERAR 686 (717)
Q Consensus 670 ~~~~~~~~~~~~~~~~~ 686 (717)
++|+..-|.+|-||=+|
T Consensus 296 d~EIatYR~LLEgEE~R 312 (312)
T PF00038_consen 296 DAEIATYRKLLEGEESR 312 (312)
T ss_dssp HHHHHHHHHHHTCHC--
T ss_pred HHHHHHHHHHHhCcccC
Confidence 34455555555555443
No 256
>PLN02320 seryl-tRNA synthetase
Probab=64.95 E-value=26 Score=40.30 Aligned_cols=68 Identities=25% Similarity=0.309 Sum_probs=34.6
Q ss_pred hhHHHHHHHhhHHHHHhhhhhHH--hhHHHHHHHHHHHHHHHHHHHHHHhhhhhh-hhhhcccccccccCC
Q 005043 585 LEGQLAAALVNREAAEKNFSSVL--KSRQEMEKKLADSLKEMELLKEKLAGLELA-QEEANSLSNIVHSDN 652 (717)
Q Consensus 585 ~~~~~~~~~~~~~~~e~~~~~~~--~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~-~~~~~~~~~~~~~~~ 652 (717)
+..|++...+.+-++-|.+.... +.++++.++...+.+++..|++++..+|.. ++....|-|++|.+=
T Consensus 105 ~~~~~~~lr~ern~~sk~i~~~~~~~~~~~l~~~~k~lk~~i~~le~~~~~~~~~l~~~~l~iPN~~h~~V 175 (502)
T PLN02320 105 LQKEVERLRAERNAVANKMKGKLEPSERQALVEEGKNLKEGLVTLEEDLVKLTDELQLEAQSIPNMTHPDV 175 (502)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCccC
Confidence 44455555555555555443311 123344444444444444444444444332 356778999999854
No 257
>PF06156 DUF972: Protein of unknown function (DUF972); InterPro: IPR010377 FUNCTION: Involved in initiation control of chromosome replication. SUBUNIT: Interacts with both DnaA and DnaN, acting as a bridge between these two proteins. SIMILARITY: Belongs to the YabA family.
Probab=64.92 E-value=15 Score=33.10 Aligned_cols=53 Identities=26% Similarity=0.448 Sum_probs=31.9
Q ss_pred hHHhhHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhcccccccccCCccchhhHHHHHHHHHHHHH
Q 005043 605 SVLKSRQEMEKKLADSLKEMELLKEKLAGLELAQEEANSLSNIVHSDNVRLEHDVAFLKAVLDDTQK 671 (717)
Q Consensus 605 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 671 (717)
.++..-.+||.+|..+..+++.||..+..+.. +|.+|.-|.+-|+..|++..+
T Consensus 5 ~l~~~l~~le~~l~~l~~~~~~LK~~~~~l~E--------------EN~~L~~EN~~Lr~~l~~~~~ 57 (107)
T PF06156_consen 5 ELFDRLDQLEQQLGQLLEELEELKKQLQELLE--------------ENARLRIENEHLRERLEELEQ 57 (107)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHHHhc
Confidence 34555566777777777777777777766541 345555555555555555433
No 258
>PTZ00420 coronin; Provisional
Probab=64.65 E-value=2.9e+02 Score=32.55 Aligned_cols=109 Identities=13% Similarity=0.067 Sum_probs=55.1
Q ss_pred cEEEEEcCCCCCCCCCeEEEEECCCCcEE-EeecCCCCCCCCcceEEEE-ECCEEEEEecCCCCCccCeEEEEECCCCcE
Q 005043 260 KNLLIFGGSSKSKTLNDLYSLDFETMIWT-RIKIRGFHPSPRAGCCGVL-CGTKWYIAGGGSRKKRHAETLIFDILKGEW 337 (717)
Q Consensus 260 ~~lyV~GG~~~~~~~ndv~~yd~~t~~W~-~v~~~g~~P~~R~~~sav~-~~~~IyV~GG~~~~~~~~dv~~yD~~t~~W 337 (717)
..+++.||.++ .+.+||+.+..=. .+. . + ....++.. .++.+++.++.++ .+.+||+.+..=
T Consensus 138 ~~iLaSgS~Dg-----tIrIWDl~tg~~~~~i~-~---~--~~V~SlswspdG~lLat~s~D~-----~IrIwD~Rsg~~ 201 (568)
T PTZ00420 138 YYIMCSSGFDS-----FVNIWDIENEKRAFQIN-M---P--KKLSSLKWNIKGNLLSGTCVGK-----HMHIIDPRKQEI 201 (568)
T ss_pred CeEEEEEeCCC-----eEEEEECCCCcEEEEEe-c---C--CcEEEEEECCCCCEEEEEecCC-----EEEEEECCCCcE
Confidence 34556677653 4889999776421 111 1 1 11223222 2677777776543 489999987542
Q ss_pred EEeecCCCCCCCCCcceEEEEE-EeCCCcEEEEEcCCCCCCCCeEEEEEccC
Q 005043 338 SVAITSPSSSVTSNKGFTLVLV-QHKEKDFLVAFGGIKKEPSNQVEVLSIEK 388 (717)
Q Consensus 338 ~~l~~~p~~~~~~r~g~s~v~v-~~~~~~~I~v~GG~~~~~~n~v~vyd~~~ 388 (717)
+....... ......++.+ ...+++..++.+|.++.....|.+||+..
T Consensus 202 --i~tl~gH~--g~~~s~~v~~~~fs~d~~~IlTtG~d~~~~R~VkLWDlr~ 249 (568)
T PTZ00420 202 --ASSFHIHD--GGKNTKNIWIDGLGGDDNYILSTGFSKNNMREMKLWDLKN 249 (568)
T ss_pred --EEEEeccc--CCceeEEEEeeeEcCCCCEEEEEEcCCCCccEEEEEECCC
Confidence 22111111 1111111111 11124445667776654445789999885
No 259
>smart00284 OLF Olfactomedin-like domains.
Probab=64.35 E-value=1.9e+02 Score=30.33 Aligned_cols=160 Identities=9% Similarity=0.067 Sum_probs=82.8
Q ss_pred CCEEEEEccccCCCCCcCcEEEEEc----CCCceEeccCCCCCCCCCcccEEEEECCcEEEEEcCCCCCCCCCeEEEEEC
Q 005043 207 SSVLILFGGEDGKRRKLNDLHMFDL----KSLTWLPLHCTGTGPSPRSNHVAALYDDKNLLIFGGSSKSKTLNDLYSLDF 282 (717)
Q Consensus 207 ~~~Lyv~GG~~~~~~~~~~v~~yD~----~t~~W~~l~~~g~~P~~R~~~aa~~~~~~~lyV~GG~~~~~~~ndv~~yd~ 282 (717)
++++|++.|.... .+.++.|.- ....+...- .+|.+-.+...+++++. +|.--.. .+.|.+||+
T Consensus 34 ~~~~wv~~~~~~~---~~~v~ey~~~~~f~~~~~~~~~---~Lp~~~~GtG~VVYngs-lYY~~~~-----s~~iiKydL 101 (255)
T smart00284 34 KSLYWYMPLNTRV---LRSVREYSSMSDFQMGKNPTDH---PLPHAGQGTGVVVYNGS-LYFNKFN-----SHDICRFDL 101 (255)
T ss_pred CceEEEEccccCC---CcEEEEecCHHHHhccCCceEE---ECCCccccccEEEECce-EEEEecC-----CccEEEEEC
Confidence 4678888765421 244556632 333443322 46777777788889888 6653322 356999999
Q ss_pred CCCcEEEeecCCC------CCCCCcce---EEEEEC-CEEEEEecCCCCCccCeEEEEECCCC----cEEEeecCCCCCC
Q 005043 283 ETMIWTRIKIRGF------HPSPRAGC---CGVLCG-TKWYIAGGGSRKKRHAETLIFDILKG----EWSVAITSPSSSV 348 (717)
Q Consensus 283 ~t~~W~~v~~~g~------~P~~R~~~---sav~~~-~~IyV~GG~~~~~~~~dv~~yD~~t~----~W~~l~~~p~~~~ 348 (717)
.+.+-......+. .|-...++ -.++.. |-+.|+...... ..--|-.+|+.+. +|..- .+
T Consensus 102 ~t~~v~~~~~Lp~a~y~~~~~Y~~~~~sdiDlAvDE~GLWvIYat~~~~-g~ivvSkLnp~tL~ve~tW~T~------~~ 174 (255)
T smart00284 102 TTETYQKEPLLNGAGYNNRFPYAWGGFSDIDLAVDENGLWVIYATEQNA-GKIVISKLNPATLTIENTWITT------YN 174 (255)
T ss_pred CCCcEEEEEecCccccccccccccCCCccEEEEEcCCceEEEEeccCCC-CCEEEEeeCcccceEEEEEEcC------CC
Confidence 9988654433211 11111122 223333 444444432221 1112235666653 56551 22
Q ss_pred CCCcceEEEEEEeCCCcEEEEEcCCCCCCCCeEEEEEccCCc
Q 005043 349 TSNKGFTLVLVQHKEKDFLVAFGGIKKEPSNQVEVLSIEKNE 390 (717)
Q Consensus 349 ~~r~g~s~v~v~~~~~~~I~v~GG~~~~~~n~v~vyd~~~~e 390 (717)
....+-+-++ .+.||++-........-.+.||..+++
T Consensus 175 k~sa~naFmv-----CGvLY~~~s~~~~~~~I~yayDt~t~~ 211 (255)
T smart00284 175 KRSASNAFMI-----CGILYVTRSLGSKGEKVFYAYDTNTGK 211 (255)
T ss_pred cccccccEEE-----eeEEEEEccCCCCCcEEEEEEECCCCc
Confidence 2333333333 367888864333334457899988765
No 260
>PF03962 Mnd1: Mnd1 family; InterPro: IPR005647 This family of proteins includes meiotic nuclear division protein 1 (MND1) from Saccharomyces cerevisiae (Baker's yeast). The mnd1 protein forms a complex with hop2 to promote homologous chromosome pairing and meiotic double-strand break repair [].
Probab=64.22 E-value=32 Score=34.36 Aligned_cols=25 Identities=32% Similarity=0.506 Sum_probs=14.4
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHh
Q 005043 608 KSRQEMEKKLADSLKEMELLKEKLA 632 (717)
Q Consensus 608 ~~~~~~~~~~~~~~~~~~~l~~~~~ 632 (717)
..|+.+-++|..+.++.+.|+++|+
T Consensus 103 ~eR~~~l~~l~~l~~~~~~l~~el~ 127 (188)
T PF03962_consen 103 EEREELLEELEELKKELKELKKELE 127 (188)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555555555555555555555555
No 261
>COG0172 SerS Seryl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=64.11 E-value=17 Score=40.80 Aligned_cols=35 Identities=37% Similarity=0.467 Sum_probs=23.4
Q ss_pred HHHHHHHHHHHHHHHhhhhhhhhhh--------cccccccccC
Q 005043 617 LADSLKEMELLKEKLAGLELAQEEA--------NSLSNIVHSD 651 (717)
Q Consensus 617 ~~~~~~~~~~l~~~~~~~~~~~~~~--------~~~~~~~~~~ 651 (717)
...+..|++.|++++.++|.+.++. .++-||+|.+
T Consensus 70 ~~~l~~e~~~l~~~l~~~e~~~~~~~~~l~~~ll~ipNi~~~~ 112 (429)
T COG0172 70 AEELIAEVKELKEKLKELEAALDELEAELDTLLLTIPNIPHES 112 (429)
T ss_pred HHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHhCCCCCccc
Confidence 3456667777777777777665433 3488999954
No 262
>KOG3088 consensus Secretory carrier membrane protein [Intracellular trafficking, secretion, and vesicular transport]
Probab=64.10 E-value=9.6 Score=39.96 Aligned_cols=40 Identities=25% Similarity=0.282 Sum_probs=29.2
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhhhhhhhcccccccccCCc
Q 005043 614 EKKLADSLKEMELLKEKLAGLELAQEEANSLSNIVHSDNV 653 (717)
Q Consensus 614 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 653 (717)
.+|-++++|..|+||.|-+.++|.|++.-++++.+--.|-
T Consensus 63 ~~kq~eL~~rqeEL~Rke~ELdRREr~~a~~g~~~~~nNW 102 (313)
T KOG3088|consen 63 AKKQAELLKKQEELRRKEQELDRRERALARAGIVIRENNW 102 (313)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHhhccCcccccCC
Confidence 3444566777788888888888888888887776666554
No 263
>PF01166 TSC22: TSC-22/dip/bun family; InterPro: IPR000580 Several eukaryotic proteins are evolutionary related and are thought to be involved in transcriptional regulation. These proteins are highly similar in a region of about 50 residues that include a conserved leucine-zipper domain most probably involved in homo- or hetero-dimerisation. Proteins containing this signature include: Vertebrate protein TSC-22 [], a transcriptional regulator which seems to act on C-type natriuretic peptide (CNP) promoter. Mammalian protein DIP (DSIP-immunoreactive peptide) [], a protein whose function is not yet known. Drosophila protein bunched [] (gene bun) (also known as shortsighted), a probable transcription factor required for peripheral nervous system morphogenesis, eye development and oogenesis. Caenorhabditis elegans hypothetical protein T18D3.7. ; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent; PDB: 1DIP_B.
Probab=63.91 E-value=2.9 Score=32.99 Aligned_cols=33 Identities=39% Similarity=0.485 Sum_probs=23.8
Q ss_pred HHHHHHHHHHHHhhhhhhhhhhcccccccccCCccchhhHHHHHHHH
Q 005043 620 SLKEMELLKEKLAGLELAQEEANSLSNIVHSDNVRLEHDVAFLKAVL 666 (717)
Q Consensus 620 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 666 (717)
.-+|+|-||++|+.++. .|-.||.|-++||.-.
T Consensus 12 VrEEVevLK~~I~eL~~--------------~n~~Le~EN~~Lk~~~ 44 (59)
T PF01166_consen 12 VREEVEVLKEQIAELEE--------------RNSQLEEENNLLKQNA 44 (59)
T ss_dssp -TTSHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHhcC
Confidence 34688889999988872 2346888888888643
No 264
>PLN02678 seryl-tRNA synthetase
Probab=63.43 E-value=30 Score=39.36 Aligned_cols=67 Identities=13% Similarity=0.138 Sum_probs=30.2
Q ss_pred hhHHHHHHHhhHHHHHhhhhhHHh---hHHHHHHHHHHHHHHHHHHHHHHhhhhhhh-hhhcccccccccC
Q 005043 585 LEGQLAAALVNREAAEKNFSSVLK---SRQEMEKKLADSLKEMELLKEKLAGLELAQ-EEANSLSNIVHSD 651 (717)
Q Consensus 585 ~~~~~~~~~~~~~~~e~~~~~~~~---~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~-~~~~~~~~~~~~~ 651 (717)
|..++++..+.+-++-|.+...-+ .++++.++...+.+|++.|.+++..+|..- +...+|-|++|.|
T Consensus 45 l~~~~e~lr~erN~~sk~I~~~k~~~~~~~~l~~~~~~Lk~ei~~le~~~~~~~~~l~~~~~~iPNi~~~~ 115 (448)
T PLN02678 45 RQFELDSLRKEFNKLNKEVAKLKIAKEDATELIAETKELKKEITEKEAEVQEAKAALDAKLKTIGNLVHDS 115 (448)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCcc
Confidence 344444444444444444433211 222222233333333333333333333222 4567899999974
No 265
>PF05816 TelA: Toxic anion resistance protein (TelA); InterPro: IPR008863 This family consists of several prokaryotic TelA like proteins. TelA and KlA are associated with tellurite resistance [] and plasmid fertility inhibition [].
Probab=63.31 E-value=53 Score=35.84 Aligned_cols=100 Identities=13% Similarity=0.186 Sum_probs=69.2
Q ss_pred HHHHHHHHHHhcchhHHHHHHHhhHHHHHhhhhhHHhhHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhcc-----ccc
Q 005043 572 ESKMAALIRKNGILEGQLAAALVNREAAEKNFSSVLKSRQEMEKKLADSLKEMELLKEKLAGLELAQEEANS-----LSN 646 (717)
Q Consensus 572 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~-----~~~ 646 (717)
..++..++.|+..+++|++......+..+..|. ++...++.-.....+.+..|...++..|...++.+. +..
T Consensus 83 ~~~~~~~~~ky~sv~~qId~I~~~L~~~~~~L~---~d~~~L~~l~~~n~~~~~~L~~~I~ag~~~~~~l~~~~~~~~~~ 159 (333)
T PF05816_consen 83 KNSLERYFAKYQSVQSQIDKIIAELESGQDELL---RDNAMLDQLYEKNWEYYQELEKYIAAGELKLEELEAELLPALQA 159 (333)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHhh
Confidence 589999999999999999999999888887764 455555555555566666677777776666655543 111
Q ss_pred ccccCCccchhhHHHHHHHHHHHHHHhhh
Q 005043 647 IVHSDNVRLEHDVAFLKAVLDDTQKELHS 675 (717)
Q Consensus 647 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 675 (717)
-.- +|--....++-++.+++-..|-+|-
T Consensus 160 ~~~-~d~~~~q~~~~~~~~l~~leqRi~D 187 (333)
T PF05816_consen 160 DAE-GDQMDAQELADLEQALFRLEQRIQD 187 (333)
T ss_pred ccc-cCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 111 3444457788888888888776664
No 266
>PF05615 THOC7: Tho complex subunit 7; InterPro: IPR008501 The Tho complex (THOC) is involved in transcription elongation and mRNA export from the nucleus []. This entry represents the subunit THOC7, which is found in higher eukaryotes, and the non-homologous subunit Mft1p found in yeast. The funtions of these subunits are unknown, and it is not known if these subunits are functionally equivalent.
Probab=63.26 E-value=31 Score=32.44 Aligned_cols=75 Identities=21% Similarity=0.293 Sum_probs=53.5
Q ss_pred HHHHhcchhHHHHHHHhhHHHHHhhhhhHHhhHHHHHHHHHHHHHHHHHHHHHHhhhhhhh---hhhcccccccccCC
Q 005043 578 LIRKNGILEGQLAAALVNREAAEKNFSSVLKSRQEMEKKLADSLKEMELLKEKLAGLELAQ---EEANSLSNIVHSDN 652 (717)
Q Consensus 578 ~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~---~~~~~~~~~~~~~~ 652 (717)
++...+.+|-.+.-+....+.-++-...--..+++++..+..+-++++.||+.|..+..-. +|++.|...+.+-.
T Consensus 51 ~l~~l~~~e~~~~k~q~~~~~n~~e~e~Y~~~~~~i~~~i~~~k~~ie~lk~~L~~ak~~r~~k~eyd~La~~I~~~p 128 (139)
T PF05615_consen 51 LLKELAQFEFSILKSQLILEMNKRERENYEQLNEEIEQEIEQAKKEIEELKEELEEAKRVRQNKEEYDALAKKINSQP 128 (139)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 4444455555555555555555556666677788888888899999999999988776544 77888877777666
No 267
>TIGR00606 rad50 rad50. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=62.98 E-value=21 Score=46.43 Aligned_cols=60 Identities=10% Similarity=0.103 Sum_probs=30.2
Q ss_pred chhHHHHHHHhhHHHHHhhhhhHHhhHHHHHHHH------HHHHHHHHHHHHHHhhhhhhhhhhcc
Q 005043 584 ILEGQLAAALVNREAAEKNFSSVLKSRQEMEKKL------ADSLKEMELLKEKLAGLELAQEEANS 643 (717)
Q Consensus 584 ~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~------~~~~~~~~~l~~~~~~~~~~~~~~~~ 643 (717)
.++.+|..+....+..+..+..+..+++.++.-+ ....+|++.|+.+|..++..+..+..
T Consensus 755 ~le~~l~~~~~~le~~~~~l~~~~~~~~~~esL~~~v~~i~r~~~ei~~l~~qie~l~~~l~~~~~ 820 (1311)
T TIGR00606 755 KVNRDIQRLKNDIEEQETLLGTIMPEEESAKVCLTDVTIMERFQMELKDVERKIAQQAAKLQGSDL 820 (1311)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccc
Confidence 3444444444444444444444444443333222 22266777777777777666654443
No 268
>TIGR03185 DNA_S_dndD DNA sulfur modification protein DndD. This model describes the DndB protein encoded by an operon associated with a sulfur-containing modification to DNA. The operon is sporadically distributed in bacteria, much like some restriction enzyme operons. DndD is described as a putative ATPase. The small number of examples known so far include species from among the Firmicutes, Actinomycetes, Proteobacteria, and Cyanobacteria.
Probab=62.93 E-value=37 Score=40.57 Aligned_cols=48 Identities=21% Similarity=0.263 Sum_probs=26.3
Q ss_pred HHHHHhhHHHHHhhhhhHHhhHHHHHHHHHHHHHHHHHHHHHHhhhhh
Q 005043 589 LAAALVNREAAEKNFSSVLKSRQEMEKKLADSLKEMELLKEKLAGLEL 636 (717)
Q Consensus 589 ~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 636 (717)
...++...+++|+.+..+....++++.+++....+.+.+..++..++.
T Consensus 204 ~~~~~~~~~~le~el~~l~~~~e~l~~~i~~l~~ele~a~~~l~~l~~ 251 (650)
T TIGR03185 204 PSSILSEIEALEAELKEQSEKYEDLAQEIAHLRNELEEAQRSLESLEK 251 (650)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555555666665555555555555555555555555555554433
No 269
>PRK08476 F0F1 ATP synthase subunit B'; Validated
Probab=62.76 E-value=58 Score=30.82 Aligned_cols=83 Identities=18% Similarity=0.270 Sum_probs=43.8
Q ss_pred HHHHhcchhHHHHHHHhhHHHHHhhhhhHHhhHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhcccccccccCCccchh
Q 005043 578 LIRKNGILEGQLAAALVNREAAEKNFSSVLKSRQEMEKKLADSLKEMELLKEKLAGLELAQEEANSLSNIVHSDNVRLEH 657 (717)
Q Consensus 578 ~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 657 (717)
+=.|....++.|++|-..+++++. .+++.++.|+++..|...++++. .+.|++++..
T Consensus 36 l~~R~~~I~~~l~~A~~~~~ea~~-------~~~e~e~~l~~Ar~eA~~~~~~a--~~~A~~ea~~-------------- 92 (141)
T PRK08476 36 MDNRNASIKNDLEKVKTNSSDVSE-------IEHEIETILKNAREEANKIRQKA--IAKAKEEAEK-------------- 92 (141)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHH--------------
Confidence 344555566666666665555553 35566666666666666655443 3344443333
Q ss_pred hHHHHHHHHHHHHHHhhhhccchhhcccc
Q 005043 658 DVAFLKAVLDDTQKELHSTRGVLAGERAR 686 (717)
Q Consensus 658 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 686 (717)
-++..-++.+.++...+.-|..|+..
T Consensus 93 ---~~~~A~~~~~~~~~~a~~~l~~e~~~ 118 (141)
T PRK08476 93 ---KIEAKKAELESKYEAFAKQLANQKQE 118 (141)
T ss_pred ---HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 12233335555555555555555544
No 270
>PRK02224 chromosome segregation protein; Provisional
Probab=62.53 E-value=34 Score=42.37 Aligned_cols=14 Identities=21% Similarity=0.382 Sum_probs=5.4
Q ss_pred HHHHHHHHHhhhhc
Q 005043 664 AVLDDTQKELHSTR 677 (717)
Q Consensus 664 ~~~~~~~~~~~~~~ 677 (717)
+.|++.|.++..-+
T Consensus 412 ~~l~~l~~~~~~l~ 425 (880)
T PRK02224 412 DFLEELREERDELR 425 (880)
T ss_pred HHHHHHHHHHHHHH
Confidence 33334443333333
No 271
>KOG4643 consensus Uncharacterized coiled-coil protein [Function unknown]
Probab=62.31 E-value=91 Score=38.37 Aligned_cols=52 Identities=33% Similarity=0.445 Sum_probs=36.3
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhhhhhhhcccccccccCCccchhhHHHHHHHHHHHHHHhhhh
Q 005043 613 MEKKLADSLKEMELLKEKLAGLELAQEEANSLSNIVHSDNVRLEHDVAFLKAVLDDTQKELHST 676 (717)
Q Consensus 613 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 676 (717)
+++.=+..++|+|||||.|.+++ | -+|-+.||-++-=||+=|+|.+.|..--
T Consensus 269 lkedN~vLleekeMLeeQLq~lr-a-----------rse~~tleseiiqlkqkl~dm~~erdtd 320 (1195)
T KOG4643|consen 269 LKEDNRVLLEEKEMLEEQLQKLR-A-----------RSEGATLESEIIQLKQKLDDMRSERDTD 320 (1195)
T ss_pred HHhhhHHHHHHHHHHHHHHHHHH-h-----------ccccCChHHHHHHHHHHHHHHHHhhhhH
Confidence 34444556778888888888776 2 2344778888888888888888776533
No 272
>PF02403 Seryl_tRNA_N: Seryl-tRNA synthetase N-terminal domain; InterPro: IPR015866 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This entry represents the N-terminal domain of Seryl-tRNA synthetase, which consists of two helices in a long alpha-hairpin. Seryl-tRNA synthetase (6.1.1.11 from EC) exists as monomer and belongs to class IIa [].; GO: 0000166 nucleotide binding, 0004828 serine-tRNA ligase activity, 0005524 ATP binding, 0006434 seryl-tRNA aminoacylation, 0005737 cytoplasm; PDB: 3QO8_A 3QO5_A 3QO7_A 3QNE_A 3LSQ_A 3LSS_A 2DQ3_B 1SET_A 1SER_A 1SRY_B ....
Probab=62.15 E-value=43 Score=29.91 Aligned_cols=66 Identities=24% Similarity=0.291 Sum_probs=31.3
Q ss_pred cchhHHHHHHHhhHHHHHhhhhhHHh---hHHHHHHHHHHHHHHHHHHHHHHhhhhhhh-hhhccccccc
Q 005043 583 GILEGQLAAALVNREAAEKNFSSVLK---SRQEMEKKLADSLKEMELLKEKLAGLELAQ-EEANSLSNIV 648 (717)
Q Consensus 583 ~~~~~~~~~~~~~~~~~e~~~~~~~~---~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~-~~~~~~~~~~ 648 (717)
-.|..++....+.+-++-|.+....+ .++++..+...+.+++..|.+++..+|..- +....|-|||
T Consensus 39 r~l~~~~e~lr~~rN~~sk~I~~~~~~~~~~~~l~~e~~~lk~~i~~le~~~~~~e~~l~~~l~~iPNip 108 (108)
T PF02403_consen 39 RELQQELEELRAERNELSKEIGKLKKAGEDAEELKAEVKELKEEIKELEEQLKELEEELNELLLSIPNIP 108 (108)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHCHTTCCTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCTS----
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHhhCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCC
Confidence 34445555555555555555555544 345555555555555555555554444221 3334455543
No 273
>KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown]
Probab=62.07 E-value=2.9e+02 Score=31.72 Aligned_cols=199 Identities=15% Similarity=0.135 Sum_probs=95.7
Q ss_pred ECCEEEEEeccCCCCCCceEEEEEECCCCcEEEeeecCCC----CCCceeeEEEEEC-------CEEEEEccccCCCCCc
Q 005043 155 WGKKVLLVGGKTDSGSDRVSVWTFDTETECWSVVEAKGDI----PVARSGHTVVRAS-------SVLILFGGEDGKRRKL 223 (717)
Q Consensus 155 ~~~~Iyv~GG~~~~~~~~~~v~~yD~~t~~W~~l~~~g~~----P~~R~~hs~~~~~-------~~Lyv~GG~~~~~~~~ 223 (717)
.++.|+|+-|.. ..-+||-....|.+.. .|+. -..--+|.+.... ...|+.-++++.
T Consensus 225 Tg~~iLvvsg~a-------qakl~DRdG~~~~e~~-KGDQYI~Dm~nTKGHia~lt~g~whP~~k~~FlT~s~Dgt---- 292 (641)
T KOG0772|consen 225 TGDQILVVSGSA-------QAKLLDRDGFEIVEFS-KGDQYIRDMYNTKGHIAELTCGCWHPDNKEEFLTCSYDGT---- 292 (641)
T ss_pred CCCeEEEEecCc-------ceeEEccCCceeeeee-ccchhhhhhhccCCceeeeeccccccCcccceEEecCCCc----
Confidence 367888887753 3566777777776654 2221 1122345444321 245555554433
Q ss_pred CcEEEEEcCC--CceEeccCCCCCCCCCcccEEEEEC-CcEEEEEcCCCCCCCCCeEEEEECCCCcEEEeecC--CCCCC
Q 005043 224 NDLHMFDLKS--LTWLPLHCTGTGPSPRSNHVAALYD-DKNLLIFGGSSKSKTLNDLYSLDFETMIWTRIKIR--GFHPS 298 (717)
Q Consensus 224 ~~v~~yD~~t--~~W~~l~~~g~~P~~R~~~aa~~~~-~~~lyV~GG~~~~~~~ndv~~yd~~t~~W~~v~~~--g~~P~ 298 (717)
+-++|... .+-..+.+. .....|.-.+.|.++ ++.+ |.+|+..+ +|..|+. +.|..-+.+ ...-.
T Consensus 293 --lRiWdv~~~k~q~qVik~k-~~~g~Rv~~tsC~~nrdg~~-iAagc~DG----SIQ~W~~--~~~~v~p~~~vk~AH~ 362 (641)
T KOG0772|consen 293 --LRIWDVNNTKSQLQVIKTK-PAGGKRVPVTSCAWNRDGKL-IAAGCLDG----SIQIWDK--GSRTVRPVMKVKDAHL 362 (641)
T ss_pred --EEEEecCCchhheeEEeec-cCCCcccCceeeecCCCcch-hhhcccCC----ceeeeec--CCcccccceEeeeccC
Confidence 22333321 111222221 222445555556553 3324 66776443 4777775 445543321 01112
Q ss_pred CCcceEEEE--ECCEEEEEecCCCCCccCeEEEEECCC-----CcEEEeecCCCCCCCCCcceEEEEEEeCCCcEEEEEc
Q 005043 299 PRAGCCGVL--CGTKWYIAGGGSRKKRHAETLIFDILK-----GEWSVAITSPSSSVTSNKGFTLVLVQHKEKDFLVAFG 371 (717)
Q Consensus 299 ~R~~~sav~--~~~~IyV~GG~~~~~~~~dv~~yD~~t-----~~W~~l~~~p~~~~~~r~g~s~v~v~~~~~~~I~v~G 371 (717)
+-..-+++. .++++++.-|.+.. +-++|+.. +.|+-++. .-+... +++. -+++|++.|
T Consensus 363 ~g~~Itsi~FS~dg~~LlSRg~D~t-----LKvWDLrq~kkpL~~~tgL~t---~~~~td-----c~FS--Pd~kli~TG 427 (641)
T KOG0772|consen 363 PGQDITSISFSYDGNYLLSRGFDDT-----LKVWDLRQFKKPLNVRTGLPT---PFPGTD-----CCFS--PDDKLILTG 427 (641)
T ss_pred CCCceeEEEeccccchhhhccCCCc-----eeeeeccccccchhhhcCCCc---cCCCCc-----cccC--CCceEEEec
Confidence 222333333 36777776666543 44555543 45666542 111122 2222 267788777
Q ss_pred CCC--CCCCCeEEEEEccCCc
Q 005043 372 GIK--KEPSNQVEVLSIEKNE 390 (717)
Q Consensus 372 G~~--~~~~n~v~vyd~~~~e 390 (717)
-.. +.....++.||..+-+
T Consensus 428 tS~~~~~~~g~L~f~d~~t~d 448 (641)
T KOG0772|consen 428 TSAPNGMTAGTLFFFDRMTLD 448 (641)
T ss_pred ccccCCCCCceEEEEecccee
Confidence 763 3335567777766554
No 274
>KOG0649 consensus WD40 repeat protein [General function prediction only]
Probab=62.00 E-value=2.1e+02 Score=29.90 Aligned_cols=136 Identities=14% Similarity=0.193 Sum_probs=72.9
Q ss_pred cEEEeeec--CCCCCCceeeEEEE-ECCEEEEEccccCCCCCcCcEEEEEcCCCceEeccCCCCCCCCCcccEEEEECCc
Q 005043 184 CWSVVEAK--GDIPVARSGHTVVR-ASSVLILFGGEDGKRRKLNDLHMFDLKSLTWLPLHCTGTGPSPRSNHVAALYDDK 260 (717)
Q Consensus 184 ~W~~l~~~--g~~P~~R~~hs~~~-~~~~Lyv~GG~~~~~~~~~~v~~yD~~t~~W~~l~~~g~~P~~R~~~aa~~~~~~ 260 (717)
.|+...|. +..+.|-.+.-... -.|.|+..||- .-+|..|+++++.+..- .-..-|-|+.+.-+..
T Consensus 100 lwe~~~P~~~~~~evPeINam~ldP~enSi~~AgGD-------~~~y~~dlE~G~i~r~~----rGHtDYvH~vv~R~~~ 168 (325)
T KOG0649|consen 100 LWEVKIPMQVDAVEVPEINAMWLDPSENSILFAGGD-------GVIYQVDLEDGRIQREY----RGHTDYVHSVVGRNAN 168 (325)
T ss_pred hhhhcCccccCcccCCccceeEeccCCCcEEEecCC-------eEEEEEEecCCEEEEEE----cCCcceeeeeeecccC
Confidence 47765542 12333433322222 35788888862 34789999999987652 1223455555542222
Q ss_pred EEEEEcCCCCCCCCCeEEEEECCCCcEEEeecCCCCC-CCC--cce--EEEEECCEEEEEecCCCCCccCeEEEEECCCC
Q 005043 261 NLLIFGGSSKSKTLNDLYSLDFETMIWTRIKIRGFHP-SPR--AGC--CGVLCGTKWYIAGGGSRKKRHAETLIFDILKG 335 (717)
Q Consensus 261 ~lyV~GG~~~~~~~ndv~~yd~~t~~W~~v~~~g~~P-~~R--~~~--sav~~~~~IyV~GG~~~~~~~~dv~~yD~~t~ 335 (717)
-=++.|+.++ .+.+||..+.+=..+-..-..| .-| .+- .+...+..+.|+||.. .+-.+++...
T Consensus 169 ~qilsG~EDG-----tvRvWd~kt~k~v~~ie~yk~~~~lRp~~g~wigala~~edWlvCGgGp------~lslwhLrss 237 (325)
T KOG0649|consen 169 GQILSGAEDG-----TVRVWDTKTQKHVSMIEPYKNPNLLRPDWGKWIGALAVNEDWLVCGGGP------KLSLWHLRSS 237 (325)
T ss_pred cceeecCCCc-----cEEEEeccccceeEEeccccChhhcCcccCceeEEEeccCceEEecCCC------ceeEEeccCC
Confidence 1345566554 3788898877655443211111 112 222 4555677888898853 2335555555
Q ss_pred cEEEee
Q 005043 336 EWSVAI 341 (717)
Q Consensus 336 ~W~~l~ 341 (717)
+-+.+-
T Consensus 238 e~t~vf 243 (325)
T KOG0649|consen 238 ESTCVF 243 (325)
T ss_pred CceEEE
Confidence 544443
No 275
>COG1382 GimC Prefoldin, chaperonin cofactor [Posttranslational modification, protein turnover, chaperones]
Probab=61.73 E-value=64 Score=29.68 Aligned_cols=72 Identities=22% Similarity=0.255 Sum_probs=41.4
Q ss_pred HHHHHHHHHHHHHhcchhHHHHHHHhhHHHHHh---------hhhhHHhhHHHHHHHHHHHHHHHHHHHHHHhhhhhhhh
Q 005043 569 QFYESKMAALIRKNGILEGQLAAALVNREAAEK---------NFSSVLKSRQEMEKKLADSLKEMELLKEKLAGLELAQE 639 (717)
Q Consensus 569 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~---------~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 639 (717)
|-....++.++...-.+|.||..+-.-+++.|+ ++=.+| =+..-++=+.+..+..|.|.-+|..+|.-+|
T Consensus 16 QqLq~ql~~~~~qk~~le~qL~E~~~al~Ele~l~eD~~vYk~VG~ll-vk~~k~~~~~eL~er~E~Le~ri~tLekQe~ 94 (119)
T COG1382 16 QQLQQQLQKVILQKQQLEAQLKEIEKALEELEKLDEDAPVYKKVGNLL-VKVSKEEAVDELEERKETLELRIKTLEKQEE 94 (119)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccHHHHHhhhHH-hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455566677777777888888887777777776 111111 0112223334444455666666666665554
Q ss_pred hh
Q 005043 640 EA 641 (717)
Q Consensus 640 ~~ 641 (717)
..
T Consensus 95 ~l 96 (119)
T COG1382 95 KL 96 (119)
T ss_pred HH
Confidence 43
No 276
>PRK04863 mukB cell division protein MukB; Provisional
Probab=61.68 E-value=53 Score=42.97 Aligned_cols=22 Identities=14% Similarity=0.225 Sum_probs=13.5
Q ss_pred chhhHHHHHHHHHHHHHHhhhh
Q 005043 655 LEHDVAFLKAVLDDTQKELHST 676 (717)
Q Consensus 655 ~~~~~~~~~~~~~~~~~~~~~~ 676 (717)
+|+++.=+++.++..++++.+.
T Consensus 461 lE~kL~~lea~leql~~~~~~l 482 (1486)
T PRK04863 461 LEQKLSVAQAAHSQFEQAYQLV 482 (1486)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 4555666666666666665553
No 277
>PRK13729 conjugal transfer pilus assembly protein TraB; Provisional
Probab=61.68 E-value=21 Score=40.47 Aligned_cols=50 Identities=16% Similarity=0.238 Sum_probs=35.9
Q ss_pred HHHHhhHHHHHhhhhhHHhhHHHHHHHHHHHHHHHHHHHHHHhhhhhhhh
Q 005043 590 AAALVNREAAEKNFSSVLKSRQEMEKKLADSLKEMELLKEKLAGLELAQE 639 (717)
Q Consensus 590 ~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 639 (717)
++..+..+++||+|+..-.+.|+|.+++++..++++.|++.++.++..+|
T Consensus 72 teqQ~kasELEKqLaaLrqElq~~saq~~dle~KIkeLEaE~~~Lk~Ql~ 121 (475)
T PRK13729 72 TEMQVTAAQMQKQYEEIRRELDVLNKQRGDDQRRIEKLGQDNAALAEQVK 121 (475)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHH
Confidence 33444556778888887555555558888888888888888888876664
No 278
>PF12325 TMF_TATA_bd: TATA element modulatory factor 1 TATA binding; InterPro: IPR022091 This is the C-terminal conserved coiled coil region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes []. The proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMF1_TATA_bd is the most conserved part of the TMFs []. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant cells. The Rab6-binding domain appears to be the same region as this C-terminal family [].
Probab=61.58 E-value=72 Score=29.45 Aligned_cols=95 Identities=21% Similarity=0.319 Sum_probs=54.9
Q ss_pred hHHHHHHHHHHHHHHHhcchhHHHHHHHhhHHHHHhhhhhHHhhHHHH---HHHHHHHHHHHHHHHHHHhhh-hhhhhhh
Q 005043 566 SIYQFYESKMAALIRKNGILEGQLAAALVNREAAEKNFSSVLKSRQEM---EKKLADSLKEMELLKEKLAGL-ELAQEEA 641 (717)
Q Consensus 566 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~---~~~~~~~~~~~~~l~~~~~~~-~~~~~~~ 641 (717)
.+.......|..+=-....|..+++...+.|+++...+...++.-.++ .+++....++++.|..|..++ |+--|++
T Consensus 16 ~~ve~L~s~lr~~E~E~~~l~~el~~l~~~r~~l~~Eiv~l~~~~e~~~~~~~~~~~L~~el~~l~~ry~t~LellGEK~ 95 (120)
T PF12325_consen 16 QLVERLQSQLRRLEGELASLQEELARLEAERDELREEIVKLMEENEELRALKKEVEELEQELEELQQRYQTLLELLGEKS 95 (120)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchH
Confidence 333334444444444445788888888888888888888777777555 344555566666666665432 2222222
Q ss_pred cccccccccCCccchhhHHHHHHHHHH
Q 005043 642 NSLSNIVHSDNVRLEHDVAFLKAVLDD 668 (717)
Q Consensus 642 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ 668 (717)
.- +=-|..||+=||+...+
T Consensus 96 E~--------veEL~~Dv~DlK~myr~ 114 (120)
T PF12325_consen 96 EE--------VEELRADVQDLKEMYRE 114 (120)
T ss_pred HH--------HHHHHHHHHHHHHHHHH
Confidence 11 11256677777776543
No 279
>PF08826 DMPK_coil: DMPK coiled coil domain like; InterPro: IPR014930 This domain is found in the myotonic dystrophy protein kinase (DMPK) and adopts a coiled coil structure. It plays a role in dimerisation []. ; GO: 0004674 protein serine/threonine kinase activity, 0005524 ATP binding, 0006468 protein phosphorylation; PDB: 1WT6_D.
Probab=61.55 E-value=61 Score=26.22 Aligned_cols=54 Identities=22% Similarity=0.330 Sum_probs=41.1
Q ss_pred HHHHHHHhhHHHHHhhhhhHHhhHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhh
Q 005043 587 GQLAAALVNREAAEKNFSSVLKSRQEMEKKLADSLKEMELLKEKLAGLELAQEE 640 (717)
Q Consensus 587 ~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 640 (717)
..|.+=...|..+...|.-+-.+...++.||.++.+....|.++|..++.-=|+
T Consensus 4 saL~~EirakQ~~~eEL~kvk~~n~~~e~kLqeaE~rn~eL~~ei~~L~~e~ee 57 (61)
T PF08826_consen 4 SALEAEIRAKQAIQEELTKVKSANLAFESKLQEAEKRNRELEQEIERLKKEMEE 57 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 346666777888888888888888888888888888888888888777654444
No 280
>PRK09343 prefoldin subunit beta; Provisional
Probab=61.51 E-value=42 Score=30.93 Aligned_cols=34 Identities=18% Similarity=0.219 Sum_probs=20.9
Q ss_pred HHHHHHHHHHHHHHhcchhHHHHHHHhhHHHHHh
Q 005043 568 YQFYESKMAALIRKNGILEGQLAAALVNREAAEK 601 (717)
Q Consensus 568 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~ 601 (717)
+|.+..++..++..-..|+.|+..+..-+++.++
T Consensus 16 ~q~lq~~l~~~~~q~~~le~q~~e~~~~~~EL~~ 49 (121)
T PRK09343 16 LQQLQQQLERLLQQKSQIDLELREINKALEELEK 49 (121)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 3555666666666666666666665555555554
No 281
>KOG1664 consensus Vacuolar H+-ATPase V1 sector, subunit E [Energy production and conversion]
Probab=60.85 E-value=39 Score=33.84 Aligned_cols=97 Identities=23% Similarity=0.220 Sum_probs=72.9
Q ss_pred chHHHHHHHHHHHHHHHh-------------cchhHHHHHHHhhHHHHHhhhhhHHhhHHHHHHHHH-HHHHHHHHHHHH
Q 005043 565 SSIYQFYESKMAALIRKN-------------GILEGQLAAALVNREAAEKNFSSVLKSRQEMEKKLA-DSLKEMELLKEK 630 (717)
Q Consensus 565 ~~~~~~~~~~~~~~~~~~-------------~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~-~~~~~~~~l~~~ 630 (717)
..|-|+|++|.++.-.+. ..|+++-.-.-+-+++|.|+|+-|-+.+..-+.=|. -+..-++.|+|+
T Consensus 49 ~kI~~~yekKeKqve~~kkI~~S~~lN~~RlKvL~ar~d~i~~i~~ea~k~Ls~i~~~~~~Y~~lL~~LivQ~Ll~L~Ep 128 (220)
T KOG1664|consen 49 LKIMQYYEKKEKQVELQKKIAKSNLLNQSRLKVLRARDDIIDDILDEAKKRLSKVSKDTDRYKKLLKDLIVQGLLQLLEP 128 (220)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHhcccCChHHHHHHHHHHHHHHHHHhCCC
Confidence 567899999987743332 256666666777789999999999999888888887 566777778877
Q ss_pred HhhhhhhhhhhcccccccccCCccchhhHHHHHHHHHHHHHHhhhhccc
Q 005043 631 LAGLELAQEEANSLSNIVHSDNVRLEHDVAFLKAVLDDTQKELHSTRGV 679 (717)
Q Consensus 631 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 679 (717)
..=+- -.|.|+...+|+++|.--|+..-=|+
T Consensus 129 ~~Ivr------------------cre~D~~lVe~~~~~a~~~y~~ka~~ 159 (220)
T KOG1664|consen 129 EVIVR------------------CREKDLKLVEAALPKAIEEYKEKAGV 159 (220)
T ss_pred eeEEe------------------ehhhhhHHHHHHHHHHHHHHHHHhcC
Confidence 54332 25789999999999988877665554
No 282
>PRK11519 tyrosine kinase; Provisional
Probab=60.73 E-value=60 Score=39.36 Aligned_cols=37 Identities=22% Similarity=0.198 Sum_probs=21.7
Q ss_pred HHHHHHHHHHHHHhcchhHHHHHHHhhHHHHHhhhhh
Q 005043 569 QFYESKMAALIRKNGILEGQLAAALVNREAAEKNFSS 605 (717)
Q Consensus 569 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~ 605 (717)
+.-+.|....-+--+-|+.||..+.+..+++|++|+.
T Consensus 256 ~~~~~k~~~a~~a~~fL~~ql~~l~~~L~~aE~~l~~ 292 (719)
T PRK11519 256 QNIERKSEEASKSLAFLAQQLPEVRSRLDVAENKLNA 292 (719)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444454444445556677777777777777665543
No 283
>PF08614 ATG16: Autophagy protein 16 (ATG16); InterPro: IPR013923 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. This entry represents auotphagy protein 16 (Apg16), which is required for the function of the Apg12p-Apg5p conjugate.; PDB: 3A7O_D 3A7P_B.
Probab=60.67 E-value=5.4 Score=39.95 Aligned_cols=82 Identities=23% Similarity=0.262 Sum_probs=24.8
Q ss_pred HHhcchhHHHHHHHhhHHHHHhhhhhHHhhHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhcccccccccCCccchhhH
Q 005043 580 RKNGILEGQLAAALVNREAAEKNFSSVLKSRQEMEKKLADSLKEMELLKEKLAGLELAQEEANSLSNIVHSDNVRLEHDV 659 (717)
Q Consensus 580 ~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 659 (717)
.+-..|...|+.+...+.+...+|......-+++++++....+.+..|+..++.++..= ..|+.++
T Consensus 74 ~~~~~l~~ELael~r~~~el~~~L~~~~~~l~~l~~~~~~~~~~l~~l~~~~~~L~~~~--------------~~l~~~l 139 (194)
T PF08614_consen 74 QKLAKLQEELAELYRSKGELAQQLVELNDELQELEKELSEKERRLAELEAELAQLEEKI--------------KDLEEEL 139 (194)
T ss_dssp ----------------------------------------HHHHHHHHHHHHHHHHHHH--------------HHHHHHH
T ss_pred cccccccccccccccccccccccccccccccchhhhhHHHHHHHHHHHHHHHHHHHHHH--------------HHHHHHH
Confidence 33445677788888888888888888888888887777777666666666666655221 1345566
Q ss_pred HHHHHHHHHHHHHhhh
Q 005043 660 AFLKAVLDDTQKELHS 675 (717)
Q Consensus 660 ~~~~~~~~~~~~~~~~ 675 (717)
.=+...++..|-|+-+
T Consensus 140 ~ek~k~~e~l~DE~~~ 155 (194)
T PF08614_consen 140 KEKNKANEILQDELQA 155 (194)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 6666666666666654
No 284
>PF00769 ERM: Ezrin/radixin/moesin family; InterPro: IPR011259 The ERM family consists of three closely-related proteins, ezrin, radixin and moesin []. Ezrin was first identified as a constituent of microvilli [], radixin as a barbed, end-capping actin-modulating protein from isolated junctional fractions [], and moesin as a heparin binding protein []. A tumour suppressor molecule responsible for neurofibromatosis type 2 (NF2) is highly similar to ERM proteins and has been designated merlin (moesin-ezrin-radixin-like protein). ERM molecules contain 3 domains, an N-terminal globular domain; an extended alpha-helical domain; and a charged C-terminal domain []. Ezrin, radixin and merlin also contain a polyproline region between the helical and C-terminal domains. The N-terminal domain is highly conserved, and is also found in merlin, band 4.1 proteins and members of the band 4.1 superfamily. ERM proteins crosslink actin filaments with plasma membranes. They co-localise with CD44 at actin filament-plasma membrane interaction sites, associating with CD44 via their N-terminal domains and with actin filaments via their C-terminal domains [].; GO: 0008092 cytoskeletal protein binding, 0005737 cytoplasm, 0019898 extrinsic to membrane; PDB: 2I1J_A 2I1K_A 1E5W_A 1EF1_C.
Probab=60.61 E-value=60 Score=33.86 Aligned_cols=64 Identities=16% Similarity=0.169 Sum_probs=34.5
Q ss_pred HHHHHHHHHHHHhcchhHHHHHHHhhHHHHHhhhhhHHhhHHHHHHHHHHHHHHHHHHHHHHhh
Q 005043 570 FYESKMAALIRKNGILEGQLAAALVNREAAEKNFSSVLKSRQEMEKKLADSLKEMELLKEKLAG 633 (717)
Q Consensus 570 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 633 (717)
-|+.++.++=..+......|..+..-....+.++..+=..++.|+.|...+..+++.|+.....
T Consensus 9 Ele~rL~q~eee~~~a~~~L~e~e~~a~~Leek~k~aeeea~~Le~k~~eaee~~~rL~~~~~~ 72 (246)
T PF00769_consen 9 ELEERLRQMEEEMRRAQEALEESEETAEELEEKLKQAEEEAEELEQKRQEAEEEKQRLEEEAEM 72 (246)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455555555555555555555555555555566666666666666666666665555554433
No 285
>PF03962 Mnd1: Mnd1 family; InterPro: IPR005647 This family of proteins includes meiotic nuclear division protein 1 (MND1) from Saccharomyces cerevisiae (Baker's yeast). The mnd1 protein forms a complex with hop2 to promote homologous chromosome pairing and meiotic double-strand break repair [].
Probab=60.13 E-value=35 Score=34.02 Aligned_cols=51 Identities=29% Similarity=0.390 Sum_probs=21.8
Q ss_pred HHHHHHHHhcchhHHHHHHHhhHHHHHhhhhhHHhhHHHHHHHHHHHHHHHH
Q 005043 574 KMAALIRKNGILEGQLAAALVNREAAEKNFSSVLKSRQEMEKKLADSLKEME 625 (717)
Q Consensus 574 ~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~ 625 (717)
+++.+-.+-..|+.+|+.+..+|++-+++.. .++..++++++++.+.+|++
T Consensus 77 ~~~~~~~~i~~l~~~i~~~~~~r~~~~eR~~-~l~~l~~l~~~~~~l~~el~ 127 (188)
T PF03962_consen 77 EIEELEKKIEELEEKIEEAKKGREESEEREE-LLEELEELKKELKELKKELE 127 (188)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcccccHHHHH-HHHHHHHHHHHHHHHHHHHH
Confidence 3333333444444444444444444333222 34444444444444444444
No 286
>COG3883 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=60.03 E-value=37 Score=35.58 Aligned_cols=75 Identities=24% Similarity=0.373 Sum_probs=0.0
Q ss_pred hHHHHHHHhhHHHHHhhhhhHHhhHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhcccccccccCCccchhhHHHHHHH
Q 005043 586 EGQLAAALVNREAAEKNFSSVLKSRQEMEKKLADSLKEMELLKEKLAGLELAQEEANSLSNIVHSDNVRLEHDVAFLKAV 665 (717)
Q Consensus 586 ~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 665 (717)
+.+|..+...+-.+++.|.++....+++-.|..+..+|+..+++++..++ .|++-|+.=
T Consensus 37 ds~l~~~~~~~~~~q~ei~~L~~qi~~~~~k~~~~~~~i~~~~~eik~l~---------------------~eI~~~~~~ 95 (265)
T COG3883 37 DSKLSELQKEKKNIQNEIESLDNQIEEIQSKIDELQKEIDQSKAEIKKLQ---------------------KEIAELKEN 95 (265)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------------------HHHHHHHHH
Q ss_pred HHHHHHHhhhhccchhhcccccee
Q 005043 666 LDDTQKELHSTRGVLAGERARAFQ 689 (717)
Q Consensus 666 ~~~~~~~~~~~~~~~~~~~~~~~~ 689 (717)
+.+-|+ +-.+|+||-|
T Consensus 96 I~~r~~--------~l~~raRAmq 111 (265)
T COG3883 96 IVERQE--------LLKKRARAMQ 111 (265)
T ss_pred HHHHHH--------HHHHHHHHHH
No 287
>PF04111 APG6: Autophagy protein Apg6; InterPro: IPR007243 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. Apg6/Vps30p has two distinct functions in the autophagic process, either associated with the membrane or in a retrieval step of the carboxypeptidase Y sorting pathway [].; GO: 0006914 autophagy; PDB: 3Q8T_A 3VP7_A 4DDP_A.
Probab=59.56 E-value=19 Score=38.96 Aligned_cols=30 Identities=20% Similarity=0.237 Sum_probs=11.5
Q ss_pred HHHHHHHHHHhcchhHHHHHHHhhHHHHHh
Q 005043 572 ESKMAALIRKNGILEGQLAAALVNREAAEK 601 (717)
Q Consensus 572 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~ 601 (717)
+.++..+......|..+|.+.-..++++++
T Consensus 49 ~~el~~le~Ee~~l~~eL~~LE~e~~~l~~ 78 (314)
T PF04111_consen 49 EEELEKLEQEEEELLQELEELEKEREELDQ 78 (314)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333443333333333333333333333333
No 288
>PRK06568 F0F1 ATP synthase subunit B; Validated
Probab=59.50 E-value=50 Score=31.89 Aligned_cols=27 Identities=19% Similarity=0.036 Sum_probs=16.0
Q ss_pred HHhcchhHHHHHHHhhHHHHHhhhhhH
Q 005043 580 RKNGILEGQLAAALVNREAAEKNFSSV 606 (717)
Q Consensus 580 ~~~~~~~~~~~~~~~~~~~~e~~~~~~ 606 (717)
.|.....+.|+.|-..|++|++-+...
T Consensus 35 eR~~~I~~~Ld~Ae~~r~eA~~l~~e~ 61 (154)
T PRK06568 35 AKILEVQEKVLKAEKLKEDAALLFEQT 61 (154)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455666666666676666654443
No 289
>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain. This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.
Probab=59.38 E-value=2.8e+02 Score=30.58 Aligned_cols=121 Identities=16% Similarity=0.158 Sum_probs=66.3
Q ss_pred CEEEEEeccCCCCCCceEEEEEECCCCcEEEeeecCCCCCCceeeEEEEECCEEEEEcccc---CCCCCcCcEEEEEcCC
Q 005043 157 KKVLLVGGKTDSGSDRVSVWTFDTETECWSVVEAKGDIPVARSGHTVVRASSVLILFGGED---GKRRKLNDLHMFDLKS 233 (717)
Q Consensus 157 ~~Iyv~GG~~~~~~~~~~v~~yD~~t~~W~~l~~~g~~P~~R~~hs~~~~~~~Lyv~GG~~---~~~~~~~~v~~yD~~t 233 (717)
..+||.-...... .+.+.++|..+.+-...-+.|..| |. .+...+..||+.-.+- ..+...+.+.+||+.+
T Consensus 13 ~~v~V~d~~~~~~--~~~v~ViD~~~~~v~g~i~~G~~P--~~--~~spDg~~lyva~~~~~R~~~G~~~d~V~v~D~~t 86 (352)
T TIGR02658 13 RRVYVLDPGHFAA--TTQVYTIDGEAGRVLGMTDGGFLP--NP--VVASDGSFFAHASTVYSRIARGKRTDYVEVIDPQT 86 (352)
T ss_pred CEEEEECCccccc--CceEEEEECCCCEEEEEEEccCCC--ce--eECCCCCEEEEEeccccccccCCCCCEEEEEECcc
Confidence 4577775432211 267999999886654333223222 21 2333456899987632 2234567899999998
Q ss_pred CceEeccCCCCCCCCC-----cc-cEEEEECCcEEEEEcCCCCCCCCCeEEEEECCCCcEEE
Q 005043 234 LTWLPLHCTGTGPSPR-----SN-HVAALYDDKNLLIFGGSSKSKTLNDLYSLDFETMIWTR 289 (717)
Q Consensus 234 ~~W~~l~~~g~~P~~R-----~~-~aa~~~~~~~lyV~GG~~~~~~~ndv~~yd~~t~~W~~ 289 (717)
.+-..--. ..+.|| +- ..+..-+++.+||.-= ..-+.+-++|+.++.-..
T Consensus 87 ~~~~~~i~--~p~~p~~~~~~~~~~~~ls~dgk~l~V~n~----~p~~~V~VvD~~~~kvv~ 142 (352)
T TIGR02658 87 HLPIADIE--LPEGPRFLVGTYPWMTSLTPDNKTLLFYQF----SPSPAVGVVDLEGKAFVR 142 (352)
T ss_pred CcEEeEEc--cCCCchhhccCccceEEECCCCCEEEEecC----CCCCEEEEEECCCCcEEE
Confidence 87542211 112233 11 2233345666777531 223568888887766544
No 290
>COG2433 Uncharacterized conserved protein [Function unknown]
Probab=59.24 E-value=40 Score=39.12 Aligned_cols=66 Identities=26% Similarity=0.286 Sum_probs=35.5
Q ss_pred HHHHHHHHHHHHhcchhHHHHHHHhhHHHHHhhhhhH-----------------HhhHHHHHHHHHHHHHHHHHHHHHHh
Q 005043 570 FYESKMAALIRKNGILEGQLAAALVNREAAEKNFSSV-----------------LKSRQEMEKKLADSLKEMELLKEKLA 632 (717)
Q Consensus 570 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~-----------------~~~~~~~~~~~~~~~~~~~~l~~~~~ 632 (717)
.++.++..|-+.|..|+..|..--+..|..|.+|+++ -+....|+++|.+..+++|+||.||+
T Consensus 426 ~~~~~ve~l~~e~~~L~~~~ee~k~eie~L~~~l~~~~r~~~~~~~~~rei~~~~~~I~~L~~~L~e~~~~ve~L~~~l~ 505 (652)
T COG2433 426 KLEETVERLEEENSELKRELEELKREIEKLESELERFRREVRDKVRKDREIRARDRRIERLEKELEEKKKRVEELERKLA 505 (652)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444445555555555555555555555555544443 22234566666666666666666666
Q ss_pred hhh
Q 005043 633 GLE 635 (717)
Q Consensus 633 ~~~ 635 (717)
-++
T Consensus 506 ~l~ 508 (652)
T COG2433 506 ELR 508 (652)
T ss_pred HHH
Confidence 655
No 291
>PF07464 ApoLp-III: Apolipophorin-III precursor (apoLp-III); InterPro: IPR010009 This family consists of several insect apolipoprotein-III sequences. Exchangeable apolipoproteins constitute a functionally important family of proteins that play critical roles in lipid transport and lipoprotein metabolism. Apolipophorin III (apoLp-III) is a prototypical exchangeable apolipoprotein found in many insect species that functions in transport of diacylglycerol (DAG) from the fat body lipid storage depot to flight muscles in the adult life stage [].; GO: 0008289 lipid binding, 0006869 lipid transport, 0005576 extracellular region; PDB: 1EQ1_A.
Probab=59.23 E-value=70 Score=30.91 Aligned_cols=86 Identities=19% Similarity=0.207 Sum_probs=63.4
Q ss_pred HHHHHHHHHHHHH-hcchhHHHHHHHhhHHHHHhhhhhH--------HhhHHHHHHHHHHHHHHHHHHHHHHhhh-hhhh
Q 005043 569 QFYESKMAALIRK-NGILEGQLAAALVNREAAEKNFSSV--------LKSRQEMEKKLADSLKEMELLKEKLAGL-ELAQ 638 (717)
Q Consensus 569 ~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~e~~~~~~--------~~~~~~~~~~~~~~~~~~~~l~~~~~~~-~~~~ 638 (717)
+.+..+++..|.+ ++.++.=|....+-.+++-.+|... -+-+..+..-+..+.+|.+.|=+.|..- +.++
T Consensus 44 ~~~~~~l~eeik~~n~~~~e~l~~~~~kl~et~~~L~k~~Pev~~qa~~l~e~lQ~~vq~l~~E~qk~~k~v~~~~~~~~ 123 (155)
T PF07464_consen 44 QNVSSSLQEEIKDANPEAEEALKQLKTKLEETAEKLRKANPEVEKQANELQEKLQSAVQSLVQESQKLAKEVSENSEGAN 123 (155)
T ss_dssp HHHHHHHHHHHTT-SSTHHHHHHHHHHHHHHHHHGGGG-SHHHHHT-SSSHHHHHHHHHHHHHHHHHHHHHHHS---SS-
T ss_pred HHHHHHHHHHHHhcChhHHHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 5788888888888 8999988888888887777777643 3557778888889999999988888765 6666
Q ss_pred hhhcccccccccCCccchhhHHHHHHHHHHHHH
Q 005043 639 EEANSLSNIVHSDNVRLEHDVAFLKAVLDDTQK 671 (717)
Q Consensus 639 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 671 (717)
|+.-+ ++|-++|+++|
T Consensus 124 e~l~~-----------------~~K~~~D~~~k 139 (155)
T PF07464_consen 124 EKLQP-----------------AIKQAYDDAVK 139 (155)
T ss_dssp GGGHH-----------------HHHHHHHHHHH
T ss_pred HHHHH-----------------HHHHHHHHHHH
Confidence 66544 66776666544
No 292
>PF04582 Reo_sigmaC: Reovirus sigma C capsid protein; InterPro: IPR007662 Protein sigmaC in its native state was shown to be a homotrimer. It was demonstrated that the sigmaC subunits are not covalently bound via disulphide linkages and the formation of an intrachain disulphide bond between the two cysteine residues of the sigmaC polypeptide may have a negative effect on oligomer stability. The susceptibility of the trimer to pH, temperature, ionic strength, chemical denaturants and detergents indicates that hydrophobic interactions contribute much more to oligomer stability than do ionic interactions and hydrogen bonding [].; PDB: 2VRS_C 2JJL_A 2BSF_A 2BT7_A 2BT8_A.
Probab=59.21 E-value=1.6 Score=46.79 Aligned_cols=21 Identities=24% Similarity=0.547 Sum_probs=18.0
Q ss_pred EEeehhhhhhhhhcccCCCCC
Q 005043 692 VEVFHLKQRLQSLENRAPTPR 712 (717)
Q Consensus 692 ~~~~~~~~~~~~~~~~~~~~~ 712 (717)
..|-.|.+|+..||.++++|.
T Consensus 140 L~ItdLe~RV~~LEs~~s~~l 160 (326)
T PF04582_consen 140 LNITDLESRVKALESGSSSPL 160 (326)
T ss_dssp HHHHHHHHHHHHHHTTTTTT-
T ss_pred chHhhHHHHHHHHhcCCCCCc
Confidence 567899999999999999873
No 293
>TIGR01010 BexC_CtrB_KpsE polysaccharide export inner-membrane protein, BexC/CtrB/KpsE family. This family contains gamma proteobacterial proteins involved in capsule polysaccharide export.
Probab=59.19 E-value=39 Score=37.11 Aligned_cols=52 Identities=12% Similarity=0.109 Sum_probs=22.9
Q ss_pred chhHHHHHHHhhHHHHHhhhhhHHhhHHH--HHHHHHHHHHHHHHHHHHHhhhh
Q 005043 584 ILEGQLAAALVNREAAEKNFSSVLKSRQE--MEKKLADSLKEMELLKEKLAGLE 635 (717)
Q Consensus 584 ~~~~~~~~~~~~~~~~e~~~~~~~~~~~~--~~~~~~~~~~~~~~l~~~~~~~~ 635 (717)
-++.||..+....++||++|..--+...- .+..-....+-+..|+.+++.+|
T Consensus 174 fl~~ql~~~~~~l~~ae~~l~~fr~~~~~~d~~~~~~~~~~~i~~L~~~l~~~~ 227 (362)
T TIGR01010 174 FAENEVKEAEQRLNATKAELLKYQIKNKVFDPKAQSSAQLSLISTLEGELIRVQ 227 (362)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhCCCcChHHHHHHHHHHHHHHHHHHHHHH
Confidence 45555555555555555555432221111 12222233344445555555544
No 294
>PF04912 Dynamitin: Dynamitin ; InterPro: IPR006996 Dynamitin is a subunit of the microtubule-dependent motor complex, it is also implicated in cell adhesion by binding to macrophage-enriched myristoylated alanine-rice C kinase substrate (MacMARCKS) []. It is also thought to modulate cytoplasmic dynein binding to an organelle, and plays a role in prometaphase chromosome alignment and spindle organisation during mitosis. Dynamitin is also involved in anchoring microtubules to centrosomes and may play a role in synapse formation during brain development []. ; GO: 0007017 microtubule-based process, 0005869 dynactin complex
Probab=59.11 E-value=9.3 Score=42.60 Aligned_cols=30 Identities=33% Similarity=0.369 Sum_probs=17.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhhhhhh
Q 005043 611 QEMEKKLADSLKEMELLKEKLAGLELAQEE 640 (717)
Q Consensus 611 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 640 (717)
+-++.|++.+.+|+++|+|-++...-++++
T Consensus 90 Es~~~kl~RL~~Ev~EL~eEl~~~~~~~~~ 119 (388)
T PF04912_consen 90 ESPEQKLQRLRREVEELKEELEKRKADSKE 119 (388)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHhhcccc
Confidence 345566666666666666666655443333
No 295
>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1.4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....
Probab=59.03 E-value=2.8e+02 Score=30.43 Aligned_cols=115 Identities=17% Similarity=0.117 Sum_probs=61.5
Q ss_pred CEEEEEcccCCCCCcccEEEEEcCCCceEEccccccCCCCCCCCCCCcccceEEEEE-CCEEEEEeccCC---CCCCceE
Q 005043 99 NKMIVVGGESGNGLLDDVQVLNFDRFSWTAASSKLYLSPSSLPLKIPACRGHSLISW-GKKVLLVGGKTD---SGSDRVS 174 (717)
Q Consensus 99 ~~lyV~GG~~~~~~~~~v~~yd~~t~~W~~l~~~~~~~~~~~~~~~p~r~~hs~v~~-~~~Iyv~GG~~~---~~~~~~~ 174 (717)
.++||.-...... ...+++||..+++-.-.-+. ...++.+..- ++.+|+..-+-. .+...+-
T Consensus 3 ~rvyV~D~~~~~~-~~rv~viD~d~~k~lGmi~~-------------g~~~~~~~spdgk~~y~a~T~~sR~~rG~RtDv 68 (342)
T PF06433_consen 3 HRVYVQDPVFFHM-TSRVYVIDADSGKLLGMIDT-------------GFLGNVALSPDGKTIYVAETFYSRGTRGERTDV 68 (342)
T ss_dssp TEEEEEE-GGGGS-SEEEEEEETTTTEEEEEEEE-------------ESSEEEEE-TTSSEEEEEEEEEEETTEEEEEEE
T ss_pred cEEEEECCccccc-cceEEEEECCCCcEEEEeec-------------ccCCceeECCCCCEEEEEEEEEeccccccceeE
Confidence 4677775432222 35789999888764333221 1222333222 567887765432 2344667
Q ss_pred EEEEECCCCc--EEEeeecCCCCCC-ceee-------EEEEECCEEEEEccccCCCCCcCcEEEEEcCCCceE
Q 005043 175 VWTFDTETEC--WSVVEAKGDIPVA-RSGH-------TVVRASSVLILFGGEDGKRRKLNDLHMFDLKSLTWL 237 (717)
Q Consensus 175 v~~yD~~t~~--W~~l~~~g~~P~~-R~~h-------s~~~~~~~Lyv~GG~~~~~~~~~~v~~yD~~t~~W~ 237 (717)
|..||+.|-. +... +|.. |... ++...+..+||+ +-.....+-+.|+..++.-
T Consensus 69 v~~~D~~TL~~~~EI~-----iP~k~R~~~~~~~~~~~ls~dgk~~~V~-----N~TPa~SVtVVDl~~~kvv 131 (342)
T PF06433_consen 69 VEIWDTQTLSPTGEIE-----IPPKPRAQVVPYKNMFALSADGKFLYVQ-----NFTPATSVTVVDLAAKKVV 131 (342)
T ss_dssp EEEEETTTTEEEEEEE-----ETTS-B--BS--GGGEEE-TTSSEEEEE-----EESSSEEEEEEETTTTEEE
T ss_pred EEEEecCcCcccceEe-----cCCcchheecccccceEEccCCcEEEEE-----ccCCCCeEEEEECCCCcee
Confidence 9999999975 4433 2332 4321 122223467776 1235677888888877653
No 296
>KOG0289 consensus mRNA splicing factor [General function prediction only]
Probab=58.88 E-value=2.7e+02 Score=31.28 Aligned_cols=69 Identities=13% Similarity=0.200 Sum_probs=38.8
Q ss_pred CCEEEEEeccCCCCCCceEEEEEECCCCc-EEEeeecCCCCCCceeeEEEEEC--CEEEEEccccCCCCCcCcEEEEEcC
Q 005043 156 GKKVLLVGGKTDSGSDRVSVWTFDTETEC-WSVVEAKGDIPVARSGHTVVRAS--SVLILFGGEDGKRRKLNDLHMFDLK 232 (717)
Q Consensus 156 ~~~Iyv~GG~~~~~~~~~~v~~yD~~t~~-W~~l~~~g~~P~~R~~hs~~~~~--~~Lyv~GG~~~~~~~~~~v~~yD~~ 232 (717)
+|-.|+.-+.++ .+|.+||+...+ ...++ ++... .-....++ |...++||.+ -.+|.|+-.
T Consensus 399 ENGY~Lat~add-----~~V~lwDLRKl~n~kt~~----l~~~~-~v~s~~fD~SGt~L~~~g~~------l~Vy~~~k~ 462 (506)
T KOG0289|consen 399 ENGYWLATAADD-----GSVKLWDLRKLKNFKTIQ----LDEKK-EVNSLSFDQSGTYLGIAGSD------LQVYICKKK 462 (506)
T ss_pred cCceEEEEEecC-----CeEEEEEehhhcccceee----ccccc-cceeEEEcCCCCeEEeecce------eEEEEEecc
Confidence 455666655543 248888886544 22222 22222 22233333 5666666532 347888888
Q ss_pred CCceEecc
Q 005043 233 SLTWLPLH 240 (717)
Q Consensus 233 t~~W~~l~ 240 (717)
+..|+++.
T Consensus 463 ~k~W~~~~ 470 (506)
T KOG0289|consen 463 TKSWTEIK 470 (506)
T ss_pred cccceeee
Confidence 99999986
No 297
>TIGR03007 pepcterm_ChnLen polysaccharide chain length determinant protein, PEP-CTERM locus subfamily. Members of this protein family belong to the family of polysaccharide chain length determinant proteins (pfam02706). All are found in species that encode the PEP-CTERM/exosortase system predicted to act in protein sorting in a number of Gram-negative bacteria, and are found near the epsH homolog that is the putative exosortase gene.
Probab=58.51 E-value=43 Score=38.49 Aligned_cols=108 Identities=18% Similarity=0.220 Sum_probs=55.4
Q ss_pred HHHHHHHHHhcchhHHHHHHHhhHHHHHhhhhh---------------HHhhHHHHHHHHHHHHH-------HHHHHHHH
Q 005043 573 SKMAALIRKNGILEGQLAAALVNREAAEKNFSS---------------VLKSRQEMEKKLADSLK-------EMELLKEK 630 (717)
Q Consensus 573 ~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~---------------~~~~~~~~~~~~~~~~~-------~~~~l~~~ 630 (717)
.+++.+-.+...++.|++++.+..+++++.++. +..-..+++.++++... .+-.|+.+
T Consensus 204 ~~l~~l~~~l~~~~~~l~~~~a~~~~l~~~l~~~~~~~~~~~~~~~~~l~~~l~~l~~~l~~l~~~y~~~hP~v~~l~~q 283 (498)
T TIGR03007 204 SEISEAQEELEAARLELNEAIAQRDALKRQLGGEEPVLLAGSSVANSELDGRIEALEKQLDALRLRYTDKHPDVIATKRE 283 (498)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCcCcccccCCCchHHHHHHHHHHHHHHHHHhcccChHHHHHHHH
Confidence 455555556666666666666666666654432 11223444444444433 22235556
Q ss_pred Hhhhhhhh-hhhcc-----cccc--------cccCCccchhhHHHHHHHHHHHHHHhhhhccch
Q 005043 631 LAGLELAQ-EEANS-----LSNI--------VHSDNVRLEHDVAFLKAVLDDTQKELHSTRGVL 680 (717)
Q Consensus 631 ~~~~~~~~-~~~~~-----~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 680 (717)
++.++..- ++.++ +.+. ....=..++.+++-|++.++..++++...+.-+
T Consensus 284 i~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~l~~~~~~l~~~~~~~~~~~ 347 (498)
T TIGR03007 284 IAQLEEQKEEEGSAKNGGPERGEIANPVYQQLQIELAEAEAEIASLEARVAELTARIERLESLL 347 (498)
T ss_pred HHHHHHHHHhhccccccCcccccccChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 66555432 11111 0111 112223457888888888888777775554443
No 298
>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]
Probab=58.47 E-value=68 Score=34.75 Aligned_cols=89 Identities=16% Similarity=0.226 Sum_probs=53.6
Q ss_pred cEEEEEcCCCceEeccCCCCCCCCCcccEEEEECCcEEEEEcCCCCCCCCCeEEEEECCCCcEEEeecCCCCCCCCcceE
Q 005043 225 DLHMFDLKSLTWLPLHCTGTGPSPRSNHVAALYDDKNLLIFGGSSKSKTLNDLYSLDFETMIWTRIKIRGFHPSPRAGCC 304 (717)
Q Consensus 225 ~v~~yD~~t~~W~~l~~~g~~P~~R~~~aa~~~~~~~lyV~GG~~~~~~~ndv~~yd~~t~~W~~v~~~g~~P~~R~~~s 304 (717)
.+-+++..|....+. +..-+.+-++..+.++ ++|-|..+ +.|-.||.+.+.--++-. | --.-.-
T Consensus 341 TikvW~~st~efvRt-----l~gHkRGIAClQYr~r-lvVSGSSD-----ntIRlwdi~~G~cLRvLe-G----HEeLvR 404 (499)
T KOG0281|consen 341 TIKVWSTSTCEFVRT-----LNGHKRGIACLQYRDR-LVVSGSSD-----NTIRLWDIECGACLRVLE-G----HEELVR 404 (499)
T ss_pred eEEEEeccceeeehh-----hhcccccceehhccCe-EEEecCCC-----ceEEEEeccccHHHHHHh-c----hHHhhh
Confidence 466667766655432 3344556677788888 77766554 458888887654322211 0 000123
Q ss_pred EEEECCEEEEEecCCCCCccCeEEEEECCC
Q 005043 305 GVLCGTKWYIAGGGSRKKRHAETLIFDILK 334 (717)
Q Consensus 305 av~~~~~IyV~GG~~~~~~~~dv~~yD~~t 334 (717)
++..+++=+|.||+++. +-++|+.+
T Consensus 405 ciRFd~krIVSGaYDGk-----ikvWdl~a 429 (499)
T KOG0281|consen 405 CIRFDNKRIVSGAYDGK-----IKVWDLQA 429 (499)
T ss_pred heeecCceeeeccccce-----EEEEeccc
Confidence 56679999999998876 55555533
No 299
>KOG0996 consensus Structural maintenance of chromosome protein 4 (chromosome condensation complex Condensin, subunit C) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=58.45 E-value=24 Score=43.75 Aligned_cols=54 Identities=19% Similarity=0.096 Sum_probs=39.2
Q ss_pred HHHHHHHHHHHHhcchhHHHHHHHhhHHHHHhhhhhHHhhHHHHHHHHHHHHHH
Q 005043 570 FYESKMAALIRKNGILEGQLAAALVNREAAEKNFSSVLKSRQEMEKKLADSLKE 623 (717)
Q Consensus 570 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~ 623 (717)
-.+.++.-+.++-+.||.|+..+-..++++|+-++..=...|++..++....+.
T Consensus 402 k~~E~lK~~~~k~kKleke~ek~~~~~~e~e~~pe~~~~~i~~~~~ei~~L~~~ 455 (1293)
T KOG0996|consen 402 KREEKLKRLTSKIKKLEKEIEKARRKKSELEKAPEKARIEIQKCQTEIEQLEEL 455 (1293)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHhCchhhHhHHHHHHHHHHHHHHH
Confidence 345566678888889999999999999999997666666666665555444433
No 300
>PRK03918 chromosome segregation protein; Provisional
Probab=58.22 E-value=46 Score=41.20 Aligned_cols=47 Identities=21% Similarity=0.262 Sum_probs=23.4
Q ss_pred HHHHHHHHHHHHhhhhccchhhccccceeeEEEeehhhhhhhhhccc
Q 005043 661 FLKAVLDDTQKELHSTRGVLAGERARAFQLQVEVFHLKQRLQSLENR 707 (717)
Q Consensus 661 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 707 (717)
=|++-+++++++....+.-++.-+++.=++.-++-.|++.+..+++.
T Consensus 388 ~l~~~l~~l~~~~~~l~~~i~~l~~~~~~~~~~i~eL~~~l~~L~~~ 434 (880)
T PRK03918 388 KLEKELEELEKAKEEIEEEISKITARIGELKKEIKELKKAIEELKKA 434 (880)
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 34444555554444444444443444444444455577666666643
No 301
>PF06705 SF-assemblin: SF-assemblin/beta giardin
Probab=58.14 E-value=59 Score=33.78 Aligned_cols=104 Identities=20% Similarity=0.272 Sum_probs=51.9
Q ss_pred chhHHHHHHHhhHHHHHhhhhhHHhhHH-HHHHHHHHHHHHHHHHHHHHhhhhhhh------------hhhccccccccc
Q 005043 584 ILEGQLAAALVNREAAEKNFSSVLKSRQ-EMEKKLADSLKEMELLKEKLAGLELAQ------------EEANSLSNIVHS 650 (717)
Q Consensus 584 ~~~~~~~~~~~~~~~~e~~~~~~~~~~~-~~~~~~~~~~~~~~~l~~~~~~~~~~~------------~~~~~~~~~~~~ 650 (717)
.++..|..-......+++.++.--..|. .+|.+...+.+++..|++.+..-...- |..+.|...|..
T Consensus 89 ~~~~~l~~L~~ri~~L~~~i~ee~~~r~~~ie~~~~~l~~~l~~l~~~~~~Er~~R~erE~~i~krl~e~~~~l~~~i~~ 168 (247)
T PF06705_consen 89 QLQSRLDSLNDRIEALEEEIQEEKEERPQDIEELNQELVRELNELQEAFENERNEREEREENILKRLEEEENRLQEKIEK 168 (247)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333333333444444444333332 244444555556666655554322111 444445555555
Q ss_pred CCccchhhHHHHHHHHHH---------------HHHHhhhhccchhhccccc
Q 005043 651 DNVRLEHDVAFLKAVLDD---------------TQKELHSTRGVLAGERARA 687 (717)
Q Consensus 651 ~~~~~~~~~~~~~~~~~~---------------~~~~~~~~~~~~~~~~~~~ 687 (717)
+...=|..+.-|+..+++ +..||++.++.|+.|+.=-
T Consensus 169 Ek~~Re~~~~~l~~~le~~~~~~~~~~e~f~~~v~~Ei~~lk~~l~~e~~~R 220 (247)
T PF06705_consen 169 EKNTRESKLSELRSELEEVKRRREKGDEQFQNFVLEEIAALKNALALESQER 220 (247)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 555555555555555554 3357777888887776533
No 302
>KOG0995 consensus Centromere-associated protein HEC1 [Cell cycle control, cell division, chromosome partitioning]
Probab=58.05 E-value=48 Score=38.20 Aligned_cols=135 Identities=19% Similarity=0.197 Sum_probs=71.2
Q ss_pred HHHHHHHHHHHHHHhcchhHHHHHHHh--hHHHH-HhhhhhHHh-------hHHHHHHHHHHHHHHHHHHH----HHHhh
Q 005043 568 YQFYESKMAALIRKNGILEGQLAAALV--NREAA-EKNFSSVLK-------SRQEMEKKLADSLKEMELLK----EKLAG 633 (717)
Q Consensus 568 ~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~-e~~~~~~~~-------~~~~~~~~~~~~~~~~~~l~----~~~~~ 633 (717)
++.--.++.++-..|+.|+.|+.++-+ +|++. +|+.+.+.. .=-+|+.|.+.-++.+++|+ +|-..
T Consensus 230 ~~~i~~~ie~l~~~n~~l~e~i~e~ek~~~~~eslre~~~~L~~D~nK~~~y~~~~~~k~~~~~~~l~~l~~Eie~kEeE 309 (581)
T KOG0995|consen 230 FTSIANEIEDLKKTNRELEEMINEREKDPGKEESLREKKARLQDDVNKFQAYVSQMKSKKQHMEKKLEMLKSEIEEKEEE 309 (581)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcCcchHHHHHHHHHHHHhHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHH
Confidence 344446788888899999999985543 22222 222221111 11233344444444444433 34445
Q ss_pred hhhhhhhhcccccccccCCccch------hhHHHHHHHHHHHHHHhhhhccchh-hcc---ccceeeEEEeehhhhhhh
Q 005043 634 LELAQEEANSLSNIVHSDNVRLE------HDVAFLKAVLDDTQKELHSTRGVLA-GER---ARAFQLQVEVFHLKQRLQ 702 (717)
Q Consensus 634 ~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~-~~~---~~~~~~~~~~~~~~~~~~ 702 (717)
.|+-|++--.|.|+|---+..-| ||--=|+-+|++.|.|+.+-+-.+- .++ .+.=+++=.++|+++.++
T Consensus 310 ~e~lq~~~d~Lk~~Ie~Q~iS~~dve~mn~Er~~l~r~l~~i~~~~d~l~k~vw~~~l~~~~~f~~le~~~~~~~~l~~ 388 (581)
T KOG0995|consen 310 IEKLQKENDELKKQIELQGISGEDVERMNLERNKLKRELNKIQSELDRLSKEVWELKLEIEDFFKELEKKFIDLNSLIR 388 (581)
T ss_pred HHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56666777778888766555433 5566666666666666665443321 111 122234455677766544
No 303
>PRK09174 F0F1 ATP synthase subunit B'; Validated
Probab=58.05 E-value=47 Score=33.62 Aligned_cols=40 Identities=15% Similarity=0.195 Sum_probs=19.7
Q ss_pred HhcchhHHHHHHHhhHHHHHhhhhhHHhhHHHHHHHHHHHHHHHHHH
Q 005043 581 KNGILEGQLAAALVNREAAEKNFSSVLKSRQEMEKKLADSLKEMELL 627 (717)
Q Consensus 581 ~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~l 627 (717)
|....++.|+.|-..|++|++. +.+.|++|+++.+|...+
T Consensus 85 R~~~I~~~L~~Ae~~k~eAe~~-------~~~ye~~L~~Ar~eA~~I 124 (204)
T PRK09174 85 RRDRIAQDLDQAARLKQEADAA-------VAAYEQELAQARAKAHSI 124 (204)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHH
Confidence 4444555555555555555544 444445555444444443
No 304
>COG3386 Gluconolactonase [Carbohydrate transport and metabolism]
Probab=57.91 E-value=2.7e+02 Score=30.00 Aligned_cols=175 Identities=14% Similarity=0.052 Sum_probs=88.0
Q ss_pred EEEEECCCCc-EEEeeec-CCCCCCceeeEEEEECCEEEEEccc-----cCCCCCcCcEEEEEcCCCceEeccCCCCCCC
Q 005043 175 VWTFDTETEC-WSVVEAK-GDIPVARSGHTVVRASSVLILFGGE-----DGKRRKLNDLHMFDLKSLTWLPLHCTGTGPS 247 (717)
Q Consensus 175 v~~yD~~t~~-W~~l~~~-g~~P~~R~~hs~~~~~~~Lyv~GG~-----~~~~~~~~~v~~yD~~t~~W~~l~~~g~~P~ 247 (717)
++.+++++.. |+.+... ...+..|.+=..+.-++.+|+---. .........+|+||+ .....++... ..
T Consensus 87 ~~~~~~~~~~~~t~~~~~~~~~~~~r~ND~~v~pdG~~wfgt~~~~~~~~~~~~~~G~lyr~~p-~g~~~~l~~~---~~ 162 (307)
T COG3386 87 VRLLDPDTGGKITLLAEPEDGLPLNRPNDGVVDPDGRIWFGDMGYFDLGKSEERPTGSLYRVDP-DGGVVRLLDD---DL 162 (307)
T ss_pred cEEEeccCCceeEEeccccCCCCcCCCCceeEcCCCCEEEeCCCccccCccccCCcceEEEEcC-CCCEEEeecC---cE
Confidence 5667765433 4555432 2355566666666666777764332 111234567999999 4555655311 11
Q ss_pred CCcccEEEEECCcEEEEEcCCCCCCCCCeEEEEECCC------C--cEEEeecCCCCCCCCcceEEEEECCEEEEEecCC
Q 005043 248 PRSNHVAALYDDKNLLIFGGSSKSKTLNDLYSLDFET------M--IWTRIKIRGFHPSPRAGCCGVLCGTKWYIAGGGS 319 (717)
Q Consensus 248 ~R~~~aa~~~~~~~lyV~GG~~~~~~~ndv~~yd~~t------~--~W~~v~~~g~~P~~R~~~sav~~~~~IyV~GG~~ 319 (717)
...+..+..-+++.+|+.- ...+.+++|+... + .+..... ..++..-.++--++.||+.....
T Consensus 163 ~~~NGla~SpDg~tly~aD-----T~~~~i~r~~~d~~~g~~~~~~~~~~~~~----~~G~PDG~~vDadG~lw~~a~~~ 233 (307)
T COG3386 163 TIPNGLAFSPDGKTLYVAD-----TPANRIHRYDLDPATGPIGGRRGFVDFDE----EPGLPDGMAVDADGNLWVAAVWG 233 (307)
T ss_pred EecCceEECCCCCEEEEEe-----CCCCeEEEEecCcccCccCCcceEEEccC----CCCCCCceEEeCCCCEEEecccC
Confidence 2222233334555677753 3346788888753 1 1111111 12233333333478888755433
Q ss_pred CCCccCeEEEEECCCCcEEEeecCCCCCCCCCcceEEEEEEeCCCcEEEEEcCC
Q 005043 320 RKKRHAETLIFDILKGEWSVAITSPSSSVTSNKGFTLVLVQHKEKDFLVAFGGI 373 (717)
Q Consensus 320 ~~~~~~dv~~yD~~t~~W~~l~~~p~~~~~~r~g~s~v~v~~~~~~~I~v~GG~ 373 (717)
+ ..|.+|+++...-..+. .| ....++.++.....+.|||..-.
T Consensus 234 g----~~v~~~~pdG~l~~~i~-lP------~~~~t~~~FgG~~~~~L~iTs~~ 276 (307)
T COG3386 234 G----GRVVRFNPDGKLLGEIK-LP------VKRPTNPAFGGPDLNTLYITSAR 276 (307)
T ss_pred C----ceEEEECCCCcEEEEEE-CC------CCCCccceEeCCCcCEEEEEecC
Confidence 3 25889999844444433 12 12334444433233555555544
No 305
>KOG3313 consensus Molecular chaperone Prefoldin, subunit 3 [Posttranslational modification, protein turnover, chaperones]
Probab=57.75 E-value=13 Score=36.26 Aligned_cols=72 Identities=22% Similarity=0.210 Sum_probs=47.0
Q ss_pred chhHHHHHHHhhHHHHHhhhhhHHhhHHHHHHH--H---------------------------H------HHHHHHHHHH
Q 005043 584 ILEGQLAAALVNREAAEKNFSSVLKSRQEMEKK--L---------------------------A------DSLKEMELLK 628 (717)
Q Consensus 584 ~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~--~---------------------------~------~~~~~~~~l~ 628 (717)
.|++|+.+-.+-..++|++|.+|=.-+.+=++- + | ++.+..++||
T Consensus 55 ~l~a~~~~l~~kIPd~entLeiv~~l~~~~~~~~s~~t~f~lsd~vy~ka~V~~~~kV~LWLGAnVMlEY~leEAeaLLk 134 (187)
T KOG3313|consen 55 SLLAQKRRLKTKIPDIENTLEIVQTLIAKKDEGESFETTFLLSDGVYTKASVPPTDKVYLWLGANVMLEYDLEEAEALLK 134 (187)
T ss_pred HHHHHHHHHHhhchHHHHHHHHHHHHHhCcccCcceeEEEEecccceeeeecCCcCeEEEEecceeEEEecHHHHHHHHH
Confidence 566777777777889999998883222221111 1 1 2345556799
Q ss_pred HHHhhhhhhhhhhcccccccccCCccchhhHHHHHHHHHHH
Q 005043 629 EKLAGLELAQEEANSLSNIVHSDNVRLEHDVAFLKAVLDDT 669 (717)
Q Consensus 629 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 669 (717)
.+|+.++.-++. +|||+.||+.=.--|
T Consensus 135 knl~sa~k~l~~--------------~~~DldfLrdQvTTt 161 (187)
T KOG3313|consen 135 KNLTSAVKSLDV--------------LEEDLDFLRDQVTTT 161 (187)
T ss_pred hhHHHHHHHHHH--------------HHHHHHHHHhhceee
Confidence 999998865543 689999998754433
No 306
>COG1579 Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only]
Probab=57.65 E-value=69 Score=33.20 Aligned_cols=52 Identities=21% Similarity=0.272 Sum_probs=24.3
Q ss_pred HHHHHHHHHHHHHHhcchhHHHHHHHhhHHHHHhhhhhHHhhHHHHHHHHHH
Q 005043 568 YQFYESKMAALIRKNGILEGQLAAALVNREAAEKNFSSVLKSRQEMEKKLAD 619 (717)
Q Consensus 568 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~ 619 (717)
+..++.++..+.++-..||.+|+.++..++..++.....-+.-..+|+.+++
T Consensus 91 ~~aL~~E~~~ak~r~~~le~el~~l~~~~~~l~~~i~~l~~~~~~~e~~~~e 142 (239)
T COG1579 91 LRALNIEIQIAKERINSLEDELAELMEEIEKLEKEIEDLKERLERLEKNLAE 142 (239)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444454444444444444444444444444444444433
No 307
>KOG1853 consensus LIS1-interacting protein NUDE [Cytoskeleton]
Probab=57.61 E-value=1.3e+02 Score=31.24 Aligned_cols=138 Identities=25% Similarity=0.301 Sum_probs=69.4
Q ss_pred hHHHHHHHHHHHHHHHhcchhHH---HHHHH-hhHHHHHhhhhhHHhhHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhh
Q 005043 566 SIYQFYESKMAALIRKNGILEGQ---LAAAL-VNREAAEKNFSSVLKSRQEMEKKLADSLKEMELLKEKLAGLELAQEEA 641 (717)
Q Consensus 566 ~~~~~~~~~~~~~~~~~~~~~~~---~~~~~-~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 641 (717)
.|.-..|+.+.++-.+|-.|+.. |..-+ +.||-.|-.-+.--+--.++|..|+-+-.-.|.|++-|-.+|.|-.+.
T Consensus 45 E~EaelesqL~q~etrnrdl~t~nqrl~~E~e~~Kek~e~q~~q~y~q~s~Leddlsqt~aikeql~kyiReLEQaNDdL 124 (333)
T KOG1853|consen 45 EIEAELESQLDQLETRNRDLETRNQRLTTEQERNKEKQEDQRVQFYQQESQLEDDLSQTHAIKEQLRKYIRELEQANDDL 124 (333)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHH
Confidence 34445555555555555544422 22111 333333333333334444566677766666777777776666543111
Q ss_pred cc--cccccccC--Cccchhh---HHHHHHHHHHHHHHhhhhccchhhccccceeeEEEeehhhhhhhhhcccCCCCCCC
Q 005043 642 NS--LSNIVHSD--NVRLEHD---VAFLKAVLDDTQKELHSTRGVLAGERARAFQLQVEVFHLKQRLQSLENRAPTPRKP 714 (717)
Q Consensus 642 ~~--~~~~~~~~--~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 714 (717)
.- =.-|+..+ .-||-|- .|||..-||+-|-=|.|.-++- =|.-+|+|-|+--+...--||+|
T Consensus 125 ErakRati~sleDfeqrLnqAIErnAfLESELdEke~llesvqRLk-----------dEardlrqelavr~kq~E~pR~~ 193 (333)
T KOG1853|consen 125 ERAKRATIYSLEDFEQRLNQAIERNAFLESELDEKEVLLESVQRLK-----------DEARDLRQELAVRTKQTERPRIV 193 (333)
T ss_pred HHhhhhhhhhHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHhhccCCCcC
Confidence 00 00111111 1233332 7999999999887666544321 23346777776655444566665
No 308
>PLN03215 ascorbic acid mannose pathway regulator 1; Provisional
Probab=57.59 E-value=3.1e+02 Score=30.51 Aligned_cols=103 Identities=14% Similarity=0.155 Sum_probs=56.5
Q ss_pred CCCeEEeeecCCCCCCcceeEEEEECCEEEEEcccCCCCCcccEEEEEcCCCceEEccccccCCCCCCCCCCCc-ccceE
Q 005043 73 SENWMVLSIAGDKPIPRFNHAAAVIGNKMIVVGGESGNGLLDDVQVLNFDRFSWTAASSKLYLSPSSLPLKIPA-CRGHS 151 (717)
Q Consensus 73 s~~W~~l~~~g~~P~~R~~haav~~~~~lyV~GG~~~~~~~~~v~~yd~~t~~W~~l~~~~~~~~~~~~~~~p~-r~~hs 151 (717)
.+.|+.+. . ..-..--.+.++|++|++.- ...++.++..- .-.++.+.... .+.... ....-
T Consensus 189 ~~~Wt~l~---~--~~~~~~DIi~~kGkfYAvD~------~G~l~~i~~~l-~i~~v~~~i~~-----~~~~g~~~~~~y 251 (373)
T PLN03215 189 GNVLKALK---Q--MGYHFSDIIVHKGQTYALDS------IGIVYWINSDL-EFSRFGTSLDE-----NITDGCWTGDRR 251 (373)
T ss_pred CCeeeEcc---C--CCceeeEEEEECCEEEEEcC------CCeEEEEecCC-ceeeecceecc-----cccCCcccCcee
Confidence 47899885 2 22345566778999999831 12577777421 11122211000 000000 11234
Q ss_pred EEEECCEEEEEeccCCCC-------------CCceEEEEEECCCCcEEEeeecC
Q 005043 152 LISWGKKVLLVGGKTDSG-------------SDRVSVWTFDTETECWSVVEAKG 192 (717)
Q Consensus 152 ~v~~~~~Iyv~GG~~~~~-------------~~~~~v~~yD~~t~~W~~l~~~g 192 (717)
.|...+.+|++....... ...-.|+..|....+|.++..-+
T Consensus 252 LVEs~GdLLmV~R~~~~~~~~~~~~~~~~~~t~~f~VfklD~~~~~WveV~sLg 305 (373)
T PLN03215 252 FVECCGELYIVERLPKESTWKRKADGFEYSRTVGFKVYKFDDELAKWMEVKTLG 305 (373)
T ss_pred EEEECCEEEEEEEEccCcccccccccccccceeEEEEEEEcCCCCcEEEecccC
Confidence 666778899988753211 11235777788899999988543
No 309
>PRK01029 tolB translocation protein TolB; Provisional
Probab=57.49 E-value=3.2e+02 Score=30.75 Aligned_cols=209 Identities=11% Similarity=0.062 Sum_probs=0.0
Q ss_pred cEEEEEcCCCceEEccccccCCCCCCCCCCCcccceEEEEECCEEEEEeccCCCCCCceEEEE--EECCCCcEEEeeecC
Q 005043 115 DVQVLNFDRFSWTAASSKLYLSPSSLPLKIPACRGHSLISWGKKVLLVGGKTDSGSDRVSVWT--FDTETECWSVVEAKG 192 (717)
Q Consensus 115 ~v~~yd~~t~~W~~l~~~~~~~~~~~~~~~p~r~~hs~v~~~~~Iyv~GG~~~~~~~~~~v~~--yD~~t~~W~~l~~~g 192 (717)
.+|++++.+..-..+.. .+.........-+++-++|-....+.. +++. ||+.+..........
T Consensus 212 ~I~~~~l~~g~~~~lt~------------~~g~~~~p~wSPDG~~Laf~s~~~g~~---di~~~~~~~~~g~~g~~~~lt 276 (428)
T PRK01029 212 KIFLGSLENPAGKKILA------------LQGNQLMPTFSPRKKLLAFISDRYGNP---DLFIQSFSLETGAIGKPRRLL 276 (428)
T ss_pred eEEEEECCCCCceEeec------------CCCCccceEECCCCCEEEEEECCCCCc---ceeEEEeecccCCCCcceEee
Q ss_pred CCCCCceeeEEEEECCEEEEEccccCCCCCcCcEEEEEcC-CCceEeccCCCCCCCCCcccEEEEECCcEEEEEcCCCCC
Q 005043 193 DIPVARSGHTVVRASSVLILFGGEDGKRRKLNDLHMFDLK-SLTWLPLHCTGTGPSPRSNHVAALYDDKNLLIFGGSSKS 271 (717)
Q Consensus 193 ~~P~~R~~hs~~~~~~~Lyv~GG~~~~~~~~~~v~~yD~~-t~~W~~l~~~g~~P~~R~~~aa~~~~~~~lyV~GG~~~~ 271 (717)
.........-...-+++.++|...... ...+|+++.. .......- .............-+++.|++.+...+
T Consensus 277 ~~~~~~~~~p~wSPDG~~Laf~s~~~g---~~~ly~~~~~~~g~~~~~l---t~~~~~~~~p~wSPDG~~Laf~~~~~g- 349 (428)
T PRK01029 277 NEAFGTQGNPSFSPDGTRLVFVSNKDG---RPRIYIMQIDPEGQSPRLL---TKKYRNSSCPAWSPDGKKIAFCSVIKG- 349 (428)
T ss_pred cCCCCCcCCeEECCCCCEEEEEECCCC---CceEEEEECcccccceEEe---ccCCCCccceeECCCCCEEEEEEcCCC-
Q ss_pred CCCCeEEEEECCCCcEEEeecCCCCCCCCcceEEEEECCEEEEEecCCCCCccCeEEEEECCCCcEEEeecCCCCCCCCC
Q 005043 272 KTLNDLYSLDFETMIWTRIKIRGFHPSPRAGCCGVLCGTKWYIAGGGSRKKRHAETLIFDILKGEWSVAITSPSSSVTSN 351 (717)
Q Consensus 272 ~~~ndv~~yd~~t~~W~~v~~~g~~P~~R~~~sav~~~~~IyV~GG~~~~~~~~dv~~yD~~t~~W~~l~~~p~~~~~~r 351 (717)
..++++||+.++..+.+... +..-...+....+..|++.....+. ..++.+|+.+...+.+.........+.
T Consensus 350 --~~~I~v~dl~~g~~~~Lt~~---~~~~~~p~wSpDG~~L~f~~~~~g~---~~L~~vdl~~g~~~~Lt~~~g~~~~p~ 421 (428)
T PRK01029 350 --VRQICVYDLATGRDYQLTTS---PENKESPSWAIDSLHLVYSAGNSNE---SELYLISLITKKTRKIVIGSGEKRFPS 421 (428)
T ss_pred --CcEEEEEECCCCCeEEccCC---CCCccceEECCCCCEEEEEECCCCC---ceEEEEECCCCCEEEeecCCCcccCce
Q ss_pred cc
Q 005043 352 KG 353 (717)
Q Consensus 352 ~g 353 (717)
.+
T Consensus 422 Ws 423 (428)
T PRK01029 422 WG 423 (428)
T ss_pred ec
No 310
>PRK05759 F0F1 ATP synthase subunit B; Validated
Probab=57.18 E-value=60 Score=30.95 Aligned_cols=44 Identities=23% Similarity=0.135 Sum_probs=26.5
Q ss_pred HHHHHHHhcchhHHHHHHHhhHHHHHhhhhhHHhhHHHHHHHHH
Q 005043 575 MAALIRKNGILEGQLAAALVNREAAEKNFSSVLKSRQEMEKKLA 618 (717)
Q Consensus 575 ~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~ 618 (717)
...+-.|.....++|+.|-..+++|++.+...-+-..+++.+..
T Consensus 30 ~~~l~~R~~~I~~~l~~a~~~~~~a~~~~~e~~~~l~~a~~ea~ 73 (156)
T PRK05759 30 MKALEERQKKIADGLAAAERAKKELELAQAKYEAQLAEARAEAA 73 (156)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33445566677777777777777777766655444433333333
No 311
>KOG3881 consensus Uncharacterized conserved protein [Function unknown]
Probab=57.01 E-value=2.3e+02 Score=31.41 Aligned_cols=156 Identities=17% Similarity=0.199 Sum_probs=75.2
Q ss_pred CEEEEEcccCCCCCcccEEEEEcCCC--ceEEccccccCCCCCCCCCCCcccceEEEEEC---CEEEEEeccCCCCCCce
Q 005043 99 NKMIVVGGESGNGLLDDVQVLNFDRF--SWTAASSKLYLSPSSLPLKIPACRGHSLISWG---KKVLLVGGKTDSGSDRV 173 (717)
Q Consensus 99 ~~lyV~GG~~~~~~~~~v~~yd~~t~--~W~~l~~~~~~~~~~~~~~~p~r~~hs~v~~~---~~Iyv~GG~~~~~~~~~ 173 (717)
..|+.+||..+ .+.+.+||+.+. .|+.-... +....+-.|-. ...+..+. .+-|+.+- ...
T Consensus 161 p~Iva~GGke~---~n~lkiwdle~~~qiw~aKNvp----nD~L~LrVPvW-~tdi~Fl~g~~~~~fat~T------~~h 226 (412)
T KOG3881|consen 161 PYIVATGGKEN---INELKIWDLEQSKQIWSAKNVP----NDRLGLRVPVW-ITDIRFLEGSPNYKFATIT------RYH 226 (412)
T ss_pred CceEecCchhc---ccceeeeecccceeeeeccCCC----Cccccceeeee-eccceecCCCCCceEEEEe------cce
Confidence 45777888653 456677777654 67654331 01111111111 11222222 22222221 234
Q ss_pred EEEEEECCCCcEEEeeecCCCCCCceeeEEEEECCEEEEEccccCCCCCcCcEEEEEcCCCceEeccCCCCCCCCCcccE
Q 005043 174 SVWTFDTETECWSVVEAKGDIPVARSGHTVVRASSVLILFGGEDGKRRKLNDLHMFDLKSLTWLPLHCTGTGPSPRSNHV 253 (717)
Q Consensus 174 ~v~~yD~~t~~W~~l~~~g~~P~~R~~hs~~~~~~~Lyv~GG~~~~~~~~~~v~~yD~~t~~W~~l~~~g~~P~~R~~~a 253 (717)
.|-.||+..++= .+.....+-.+.++-+.+.-++.||+ | .....+..||..+..--.....|---..|+
T Consensus 227 qvR~YDt~~qRR-PV~~fd~~E~~is~~~l~p~gn~Iy~-g------n~~g~l~~FD~r~~kl~g~~~kg~tGsirs--- 295 (412)
T KOG3881|consen 227 QVRLYDTRHQRR-PVAQFDFLENPISSTGLTPSGNFIYT-G------NTKGQLAKFDLRGGKLLGCGLKGITGSIRS--- 295 (412)
T ss_pred eEEEecCcccCc-ceeEeccccCcceeeeecCCCcEEEE-e------cccchhheecccCceeeccccCCccCCcce---
Confidence 688999986542 22211112233333333333444444 3 356778899998776443322222223332
Q ss_pred EEEECCcEEEEEcCCCCCCCCCeEEEEECCC
Q 005043 254 AALYDDKNLLIFGGSSKSKTLNDLYSLDFET 284 (717)
Q Consensus 254 a~~~~~~~lyV~GG~~~~~~~ndv~~yd~~t 284 (717)
...++...++..+|.+- -+-+||.++
T Consensus 296 ih~hp~~~~las~GLDR-----yvRIhD~kt 321 (412)
T KOG3881|consen 296 IHCHPTHPVLASCGLDR-----YVRIHDIKT 321 (412)
T ss_pred EEEcCCCceEEeeccce-----eEEEeeccc
Confidence 33455544777777653 377888776
No 312
>PF10267 Tmemb_cc2: Predicted transmembrane and coiled-coil 2 protein; InterPro: IPR019394 This family of transmembrane coiled-coil containing proteins is conserved from worms to humans. Its function is unknown.
Probab=56.92 E-value=8.3 Score=42.83 Aligned_cols=14 Identities=21% Similarity=0.290 Sum_probs=6.4
Q ss_pred hhHHHHHHHHHHHH
Q 005043 657 HDVAFLKAVLDDTQ 670 (717)
Q Consensus 657 ~~~~~~~~~~~~~~ 670 (717)
+|+.-||.=|-++.
T Consensus 276 ~Ei~~LKqeLa~~E 289 (395)
T PF10267_consen 276 NEIYNLKQELASME 289 (395)
T ss_pred HHHHHHHHHHHhHH
Confidence 44555554444433
No 313
>PF02050 FliJ: Flagellar FliJ protein; InterPro: IPR012823 Many flagellar proteins are exported by a flagellum-specific export pathway. Attempts have been made to characterise the apparatus responsible for this process, by designing assays to screen for mutants with export defects []. Experiments involving filament removal from temperature-sensitive flagellar mutants of Salmonella typhimurium have shown that, while most mutants were able to regrow filaments, flhA, fliH, fliI and fliN mutants showed no or greatly reduced regrowth. This suggests that the corresponding gene products are involved in the process of flagellum-specific export. The sequences of fliH, fliI and the adjacent gene, fliJ, have been deduced. FliJ was shown to encode a protein of molecular mass 17,302 Da []. It is a membrane-associated protein that affects chemotactic events, mutations in FliJ result in failure to respond to chemotactic stimuli.; GO: 0003774 motor activity, 0001539 ciliary or flagellar motility, 0006935 chemotaxis, 0009288 bacterial-type flagellum, 0016020 membrane, 0044461 bacterial-type flagellum part; PDB: 3AJW_A.
Probab=56.85 E-value=20 Score=31.95 Aligned_cols=81 Identities=19% Similarity=0.289 Sum_probs=35.2
Q ss_pred HHHHhhhhhHHhhHHHHHHHHHHHHHHHHHHHHHHhhhh--hhhhhhcccccccccCCccchhhHHHHHHHHHHHHHHhh
Q 005043 597 EAAEKNFSSVLKSRQEMEKKLADSLKEMELLKEKLAGLE--LAQEEANSLSNIVHSDNVRLEHDVAFLKAVLDDTQKELH 674 (717)
Q Consensus 597 ~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 674 (717)
|+|+..|+.+..-.++.+.+|..+..+...+.+++.+.. -.-.+..+....+ -+|++.+.-+++-++..++++.
T Consensus 1 d~a~~~l~~~~~~~~~~~~~l~~L~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~----~~l~~~i~~~~~~~~~~~~~~~ 76 (123)
T PF02050_consen 1 DQAEQELAEAQQELQEAEEQLEQLQQERQEYQEQLSESQQGVSVAQLRNYQRYI----SALEQAIQQQQQELERLEQEVE 76 (123)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT-----SGGGHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHH
Confidence 344555555555555555555555555555444443322 0000011111111 1355556666666666666666
Q ss_pred hhccchh
Q 005043 675 STRGVLA 681 (717)
Q Consensus 675 ~~~~~~~ 681 (717)
..|..|.
T Consensus 77 ~~r~~l~ 83 (123)
T PF02050_consen 77 QAREELQ 83 (123)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 6655543
No 314
>PRK14474 F0F1 ATP synthase subunit B; Provisional
Probab=56.78 E-value=54 Score=34.27 Aligned_cols=30 Identities=7% Similarity=0.079 Sum_probs=16.2
Q ss_pred HHHHhcchhHHHHHHHhhHHHHHhhhhhHH
Q 005043 578 LIRKNGILEGQLAAALVNREAAEKNFSSVL 607 (717)
Q Consensus 578 ~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~ 607 (717)
+-.|....++.|..|-..+++|++.+...-
T Consensus 34 l~eR~~~I~~~l~~Ae~~~~eA~~~~~e~e 63 (250)
T PRK14474 34 MKKRQQRIANRWQDAEQRQQEAGQEAERYR 63 (250)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455555666666666666555444443
No 315
>PF04899 MbeD_MobD: MbeD/MobD like ; InterPro: IPR006983 The MbeD and MobD proteins are plasmid encoded, and are involved in the plasmid mobilisation and transfer in the presence of conjugative plasmids [].
Probab=56.70 E-value=58 Score=27.11 Aligned_cols=52 Identities=25% Similarity=0.258 Sum_probs=38.9
Q ss_pred chhHHHHHHHhhHHH-HHhhhhhHHhhHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 005043 584 ILEGQLAAALVNREA-AEKNFSSVLKSRQEMEKKLADSLKEMELLKEKLAGLE 635 (717)
Q Consensus 584 ~~~~~~~~~~~~~~~-~e~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 635 (717)
.||.||--|+.+.++ .+|.+..-=.+...+...++.+-++-..|++++..+.
T Consensus 3 eLE~qLl~ale~Lq~~y~~q~~~Wq~sy~~Lq~~~~~t~~~~a~L~~qv~~Ls 55 (70)
T PF04899_consen 3 ELEKQLLSALEELQQSYEKQQQEWQSSYADLQHMFEQTSQENAALSEQVNNLS 55 (70)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Confidence 367788888866654 4667777777788888888888888888888877665
No 316
>PRK14472 F0F1 ATP synthase subunit B; Provisional
Probab=56.59 E-value=1e+02 Score=30.21 Aligned_cols=32 Identities=16% Similarity=0.211 Sum_probs=20.4
Q ss_pred HHHHHHHhcchhHHHHHHHhhHHHHHhhhhhH
Q 005043 575 MAALIRKNGILEGQLAAALVNREAAEKNFSSV 606 (717)
Q Consensus 575 ~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~ 606 (717)
...+=.|....+++|+.|-..+++|++.++..
T Consensus 44 ~~~l~~R~~~I~~~l~~Ae~~~~eA~~~~~e~ 75 (175)
T PRK14472 44 LSALEEREKGIQSSIDRAHSAKDEAEAILRKN 75 (175)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444566677777777777777777655544
No 317
>PF06098 Radial_spoke_3: Radial spoke protein 3; InterPro: IPR009290 This family consists of several radial spoke protein 3 (RSP3) sequences. Eukaryotic cilia and flagella present in diverse types of cells perform motile, sensory, and developmental functions in organisms from protists to humans. They are centred by precisely organised, microtubule-based structures, the axonemes. The axoneme consists of two central singlet microtubules, called the central pair, and nine outer doublet microtubules. These structures are well conserved during evolution. The outer doublet microtubules, each composed of A and B sub-fibres, are connected to each other by nexin links, while the central pair is held at the centre of the axoneme by radial spokes. The radial spokes are T-shaped structures extending from the A-tubule of each outer doublet microtubule to the centre of the axoneme. Radial spoke protein 3 (RSP3), is present at the proximal end of the spoke stalk and helps in anchoring the radial spoke to the outer doublet. It is thought that radial spokes regulate the activity of inner arm dynein through protein phosphorylation and dephosphorylation [].
Probab=56.58 E-value=95 Score=33.20 Aligned_cols=107 Identities=24% Similarity=0.283 Sum_probs=73.2
Q ss_pred HHHHHHHHHHHHhcchhHHHHHHHhhHHHHHhhhhhHHhhHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhccccccc-
Q 005043 570 FYESKMAALIRKNGILEGQLAAALVNREAAEKNFSSVLKSRQEMEKKLADSLKEMELLKEKLAGLELAQEEANSLSNIV- 648 (717)
Q Consensus 570 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~- 648 (717)
..|.+++.+-+.-...|..=.+-|++...+|..-.-..+.++.-.+.-...++...++++|+++..+||.=...|-+-|
T Consensus 150 ~EEeEL~~lr~~q~~fe~~R~aEl~e~qrlE~~e~r~~eEkerR~~q~~~~~~~~~~~~~Ki~Ar~~a~~yl~~l~~~v~ 229 (291)
T PF06098_consen 150 MEEEELAALRRQQRAFEELRNAELAEVQRLEEAEKRRREEKERRIKQQKERLEKEKELREKIAARAFAQQYLSDLVPSVL 229 (291)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6677777777777777776666666555555444444556666666666777788889999999999995443322222
Q ss_pred --------ccCCccchhhHHHHHHHHHHHHHHhhhh
Q 005043 649 --------HSDNVRLEHDVAFLKAVLDDTQKELHST 676 (717)
Q Consensus 649 --------~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 676 (717)
--|.|.-|=+.-||=-++++..++|+..
T Consensus 230 ~~L~~~G~f~dpv~~~i~~~flPwL~~~v~~~~~~~ 265 (291)
T PF06098_consen 230 DSLEDSGYFYDPVEREIETQFLPWLMEEVAEELEKR 265 (291)
T ss_pred HHHHHCCCCCChHHHHHHHHhHHHHHHHHHHHHHHH
Confidence 3455555666788888888888888776
No 318
>KOG0243 consensus Kinesin-like protein [Cytoskeleton]
Probab=56.48 E-value=50 Score=40.91 Aligned_cols=92 Identities=23% Similarity=0.320 Sum_probs=53.3
Q ss_pred cchhHHHHHHHhhHHHHHhhhh-------hHHhhHHHHHHHHHHHHHHHHHHHHHHhhhhhh-hhhhcccccccccCCcc
Q 005043 583 GILEGQLAAALVNREAAEKNFS-------SVLKSRQEMEKKLADSLKEMELLKEKLAGLELA-QEEANSLSNIVHSDNVR 654 (717)
Q Consensus 583 ~~~~~~~~~~~~~~~~~e~~~~-------~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~-~~~~~~~~~~~~~~~~~ 654 (717)
+.+|.+|++.-...+.....+. .+.+..++++++|.+..+|++-++|++..++.. .++---++++=-++...
T Consensus 451 eele~el~~~~~~l~~~~e~~~~~~~~~~~l~~~~~~~k~~L~~~~~el~~~~ee~~~~~~~l~~~e~ii~~~~~se~~l 530 (1041)
T KOG0243|consen 451 EELEEELENLEKQLKDLTELYMNQLEIKELLKEEKEKLKSKLQNKNKELESLKEELQQAKATLKEEEEIISQQEKSEEKL 530 (1041)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455555555544444444444 456667788888999999999999988887765 23323334443333333
Q ss_pred chhhHHHHHHHHHHHHHHhhh
Q 005043 655 LEHDVAFLKAVLDDTQKELHS 675 (717)
Q Consensus 655 ~~~~~~~~~~~~~~~~~~~~~ 675 (717)
-..++. |..-++..|+++++
T Consensus 531 ~~~a~~-l~~~~~~s~~d~s~ 550 (1041)
T KOG0243|consen 531 VDRATK-LRRSLEESQDDLSS 550 (1041)
T ss_pred HHHHHH-HHHHHHHHHHHHHH
Confidence 333222 33345566666554
No 319
>TIGR03321 alt_F1F0_F0_B alternate F1F0 ATPase, F0 subunit B. CC and in principle may run in either direction. This model represents the F0 subunit B of this apparent second ATP synthase.
Probab=56.43 E-value=45 Score=34.65 Aligned_cols=30 Identities=23% Similarity=0.286 Sum_probs=18.2
Q ss_pred HHHHHHhcchhHHHHHHHhhHHHHHhhhhh
Q 005043 576 AALIRKNGILEGQLAAALVNREAAEKNFSS 605 (717)
Q Consensus 576 ~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~ 605 (717)
..+-.|....++.|.+|-..+++|++.+..
T Consensus 32 ~~l~~R~~~I~~~l~~Ae~~~~eA~~~~~e 61 (246)
T TIGR03321 32 DAMDAREKKIAGELADADTKKREAEQERRE 61 (246)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334455566667777766666666665553
No 320
>KOG4571 consensus Activating transcription factor 4 [Transcription]
Probab=56.22 E-value=39 Score=35.68 Aligned_cols=54 Identities=24% Similarity=0.391 Sum_probs=31.1
Q ss_pred hHHhhHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhcccccccccCCccchhhHHHHHHHHHHHHHH
Q 005043 605 SVLKSRQEMEKKLADSLKEMELLKEKLAGLELAQEEANSLSNIVHSDNVRLEHDVAFLKAVLDDTQKE 672 (717)
Q Consensus 605 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 672 (717)
-+++-||.-..+.++++-|.+.|..+=..|. +.+- +||+||++||-.+.+-+|+
T Consensus 238 AAtRYRqKkRae~E~l~ge~~~Le~rN~~LK---~qa~-----------~lerEI~ylKqli~e~~~~ 291 (294)
T KOG4571|consen 238 AATRYRQKKRAEKEALLGELEGLEKRNEELK---DQAS-----------ELEREIRYLKQLILEVYKK 291 (294)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHH-----------HHHHHHHHHHHHHHHHHHh
Confidence 4466666655555555555555433322222 1111 3678999999888877774
No 321
>PF10146 zf-C4H2: Zinc finger-containing protein ; InterPro: IPR018482 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents a family of proteins which appears to have a highly conserved zinc finger domain at the C-terminal end, described as -C-X2-CH-X3-H-X5-C-X2-C-. The structure is predicted to contain a coiled coil. Members of this family are annotated as being tumour-associated antigen HCA127 in humans, but this could not be confirmed.
Probab=56.14 E-value=65 Score=33.23 Aligned_cols=70 Identities=16% Similarity=0.209 Sum_probs=56.7
Q ss_pred hHHHHHHHHHHHHHHHhcchhHHHHHHHhhHHHHHhhhhhHHhhHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 005043 566 SIYQFYESKMAALIRKNGILEGQLAAALVNREAAEKNFSSVLKSRQEMEKKLADSLKEMELLKEKLAGLE 635 (717)
Q Consensus 566 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 635 (717)
.....|+..+..|+........+|-.+-+.+..+|.-+..+-..|.+.+.+.....+|+.-||+.+-.+.
T Consensus 32 ~~L~e~~kE~~~L~~Er~~h~eeLrqI~~DIn~lE~iIkqa~~er~~~~~~i~r~~eey~~Lk~~in~~R 101 (230)
T PF10146_consen 32 KCLEEYRKEMEELLQERMAHVEELRQINQDINTLENIIKQAESERNKRQEKIQRLYEEYKPLKDEINELR 101 (230)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4457888888888888888888888888888888888888888888888888888888888888777664
No 322
>PF07798 DUF1640: Protein of unknown function (DUF1640); InterPro: IPR024461 This family consists of uncharacterised proteins.
Probab=55.61 E-value=58 Score=32.03 Aligned_cols=103 Identities=18% Similarity=0.215 Sum_probs=57.3
Q ss_pred HHHhcchhHHHHHHH-hhHHHHHhhhhh---HHhhHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhcccccccccCCcc
Q 005043 579 IRKNGILEGQLAAAL-VNREAAEKNFSS---VLKSRQEMEKKLADSLKEMELLKEKLAGLELAQEEANSLSNIVHSDNVR 654 (717)
Q Consensus 579 ~~~~~~~~~~~~~~~-~~~~~~e~~~~~---~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 654 (717)
+.+.|--+.|=.+.. +-++..+.++.. -+=++.++|.-......+...||-.+..+++. --+..++++-+
T Consensus 11 Le~~Gft~~QAe~i~~~l~~~l~~~~~~~~~~~vtk~d~e~~~~~~~a~~~eLr~el~~~~k~------~~~~lr~~~e~ 84 (177)
T PF07798_consen 11 LEAAGFTEEQAEAIMKALREVLNDSLEKVAQDLVTKSDLENQEYLFKAAIAELRSELQNSRKS------EFAELRSENEK 84 (177)
T ss_pred HHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHH
Confidence 455555555544444 334444444432 24455666665555555555666655554422 22345666777
Q ss_pred chhhHHHHHHHH-HHHHHHhhhhccchhhccccc
Q 005043 655 LEHDVAFLKAVL-DDTQKELHSTRGVLAGERARA 687 (717)
Q Consensus 655 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~ 687 (717)
|.||+.=|++=| +|.+|=-++.|.=+..||.|.
T Consensus 85 L~~eie~l~~~L~~ei~~l~a~~klD~n~eK~~~ 118 (177)
T PF07798_consen 85 LQREIEKLRQELREEINKLRAEVKLDLNLEKGRI 118 (177)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHH
Confidence 888888777744 345555556666666666653
No 323
>COG0216 PrfA Protein chain release factor A [Translation, ribosomal structure and biogenesis]
Probab=55.57 E-value=26 Score=37.78 Aligned_cols=22 Identities=23% Similarity=0.321 Sum_probs=17.0
Q ss_pred HHHHHHHHHHHhcchhHHHHHH
Q 005043 571 YESKMAALIRKNGILEGQLAAA 592 (717)
Q Consensus 571 ~~~~~~~~~~~~~~~~~~~~~~ 592 (717)
.-.|+..+..+++.|+.+|.+.
T Consensus 5 ~~~kl~~~~~r~~el~~~L~~p 26 (363)
T COG0216 5 LLEKLESLLERYEELEALLSDP 26 (363)
T ss_pred HHHHHHHHHHHHHHHHHHhcCc
Confidence 4567888888888888888765
No 324
>PF02185 HR1: Hr1 repeat; InterPro: IPR000861 The HR1 repeat was first described as a three times repeated homology region of the N-terminal non-catalytic part of protein kinase PRK1(PKN) []. The first two of these repeats were later shown to bind the small G protein rho [, ] known to activate PKN in its GTP-bound form. Similar rho-binding domains also occur in a number of other protein kinases and in the rho-binding proteins rhophilin and rhotekin. Recently, the structure of the N-terminal HR1 repeat complexed with RhoA has been determined by X-ray crystallography []. It forms an antiparallel coiled-coil fold termed an ACC finger. This entry includes domains found within rho-associated protein kinases.; GO: 0007165 signal transduction, 0005622 intracellular; PDB: 1CXZ_B 3O0Z_C 2RMK_B 1URF_A.
Probab=55.37 E-value=47 Score=27.29 Aligned_cols=54 Identities=30% Similarity=0.384 Sum_probs=42.2
Q ss_pred cchhHHHHHHHhhHHHHHhhhhhH---Hhh-HHHHHHHHHHHHHHHHHHHHHHhhhhh
Q 005043 583 GILEGQLAAALVNREAAEKNFSSV---LKS-RQEMEKKLADSLKEMELLKEKLAGLEL 636 (717)
Q Consensus 583 ~~~~~~~~~~~~~~~~~e~~~~~~---~~~-~~~~~~~~~~~~~~~~~l~~~~~~~~~ 636 (717)
+.|..+|+-=+.-++-||+=+... -+. +++++.+|.++.+.++.|+++|..+..
T Consensus 4 ~~L~~~i~~E~ki~~Gae~m~~~~~t~~~~~~~~~~~~l~~s~~kI~~L~~~L~~l~~ 61 (70)
T PF02185_consen 4 EELQKKIDKELKIKEGAENMLQAYSTDKKKVLSEAESQLRESNQKIELLREQLEKLQQ 61 (70)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHCCHHCH-HHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHccCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 346667777778888888866643 234 889999999999999999999987653
No 325
>PF03148 Tektin: Tektin family; InterPro: IPR000435 Tektin heteropolymers form unique protofilaments of flagellar microtubules []. The proteins are predicted to form extended rods composed of 2 alpha- helical segments (~180 residues long) capable of forming coiled coils, interrupted by non-helical linkers []. The 2 segments are similar in sequence, indicating a gene duplication event. Along each tektin rod, cysteine residues occur with a periodicity of ~8nm, coincident with the axial repeat of tubulin dimers in microtubules []. It is proposed that the assembly of tektin heteropolymers produces filaments with repeats of 8, 16, 24, 32, 40, 48 and 96nm, generating the basis for the complex spatial arrangements of axonemal components [].; GO: 0000226 microtubule cytoskeleton organization, 0005874 microtubule
Probab=55.35 E-value=83 Score=35.05 Aligned_cols=86 Identities=21% Similarity=0.310 Sum_probs=55.5
Q ss_pred HHHHhhhhhHHhhHHHHHHHHHHHHHHHHHH-----------HHHHhhhhhhhhhhcccccccccCCcc------chhhH
Q 005043 597 EAAEKNFSSVLKSRQEMEKKLADSLKEMELL-----------KEKLAGLELAQEEANSLSNIVHSDNVR------LEHDV 659 (717)
Q Consensus 597 ~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~l-----------~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~ 659 (717)
.+..+++....+-|++||-.|..+++|+..+ ++|.+.+.+||--..+=.+=++-++.| |=.||
T Consensus 247 ~al~~Ri~et~~ak~~Le~ql~~~~~ei~~~e~~i~~L~~ai~~k~~~lkvaqTRL~~R~~RP~vElcrD~~q~~L~~Ev 326 (384)
T PF03148_consen 247 AALRKRIHETQEAKNELEWQLKKTLQEIAEMEKNIEDLEKAIRDKEGPLKVAQTRLENRTQRPNVELCRDPPQYGLIEEV 326 (384)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHhhHhcCCchHHHHhhHHHHHHHHH
Confidence 3444566666777777777776666666554 445555566664444444444444443 44679
Q ss_pred HHHHHHHHHHHHHhhhhccchhh
Q 005043 660 AFLKAVLDDTQKELHSTRGVLAG 682 (717)
Q Consensus 660 ~~~~~~~~~~~~~~~~~~~~~~~ 682 (717)
.-|+..++.+|..|+.+...|..
T Consensus 327 ~~l~~~i~~L~~~L~~a~~~l~~ 349 (384)
T PF03148_consen 327 KELRESIEALQEKLDEAEASLQK 349 (384)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999888877766643
No 326
>PRK10884 SH3 domain-containing protein; Provisional
Probab=55.11 E-value=48 Score=33.58 Aligned_cols=19 Identities=5% Similarity=0.184 Sum_probs=7.5
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 005043 613 MEKKLADSLKEMELLKEKL 631 (717)
Q Consensus 613 ~~~~~~~~~~~~~~l~~~~ 631 (717)
++++.+.+.+|.+.++.++
T Consensus 137 L~~~n~~L~~~l~~~~~~~ 155 (206)
T PRK10884 137 LKEENQKLKNQLIVAQKKV 155 (206)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3333333333334444443
No 327
>PRK03947 prefoldin subunit alpha; Reviewed
Probab=55.07 E-value=1.1e+02 Score=28.57 Aligned_cols=10 Identities=10% Similarity=0.305 Sum_probs=3.6
Q ss_pred hhHHhhHHHH
Q 005043 604 SSVLKSRQEM 613 (717)
Q Consensus 604 ~~~~~~~~~~ 613 (717)
+.+..+++++
T Consensus 23 ~~l~~~~~~l 32 (140)
T PRK03947 23 EALQQQLEEL 32 (140)
T ss_pred HHHHHHHHHH
Confidence 3333333333
No 328
>KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown]
Probab=55.05 E-value=3.2e+02 Score=30.00 Aligned_cols=145 Identities=12% Similarity=0.205 Sum_probs=78.6
Q ss_pred CCEEEEEeccCCCCCCceEEEEEECCCCcEEEeeecCCCCCCce--eeEEEEECCEEEEEccccCCCCCcCcEEEEEcCC
Q 005043 156 GKKVLLVGGKTDSGSDRVSVWTFDTETECWSVVEAKGDIPVARS--GHTVVRASSVLILFGGEDGKRRKLNDLHMFDLKS 233 (717)
Q Consensus 156 ~~~Iyv~GG~~~~~~~~~~v~~yD~~t~~W~~l~~~g~~P~~R~--~hs~~~~~~~Lyv~GG~~~~~~~~~~v~~yD~~t 233 (717)
++.+.+.||-++ ..+.|+..++.|--.- +.-.. ..++..+++.+++-||.++. +.+|...+
T Consensus 75 ~~~l~aTGGgDD------~AflW~~~~ge~~~el-----tgHKDSVt~~~FshdgtlLATGdmsG~------v~v~~~st 137 (399)
T KOG0296|consen 75 NNNLVATGGGDD------LAFLWDISTGEFAGEL-----TGHKDSVTCCSFSHDGTLLATGDMSGK------VLVFKVST 137 (399)
T ss_pred CCceEEecCCCc------eEEEEEccCCcceeEe-----cCCCCceEEEEEccCceEEEecCCCcc------EEEEEccc
Confidence 678888888753 4677888888864332 21112 22334467888888886654 44444443
Q ss_pred --CceEeccCCCCCCCCCcccEEEEECCcEEEEEcCCCCCCCCCeEEEEECCCCcEEEeecCCCCCCCCcceEEEEECCE
Q 005043 234 --LTWLPLHCTGTGPSPRSNHVAALYDDKNLLIFGGSSKSKTLNDLYSLDFETMIWTRIKIRGFHPSPRAGCCGVLCGTK 311 (717)
Q Consensus 234 --~~W~~l~~~g~~P~~R~~~aa~~~~~~~lyV~GG~~~~~~~ndv~~yd~~t~~W~~v~~~g~~P~~R~~~sav~~~~~ 311 (717)
..|.-......+-- +..+.-..++++|-.++ .+|+|.+....-.++-.- +..+..++-..-+||
T Consensus 138 g~~~~~~~~e~~dieW------l~WHp~a~illAG~~DG-----svWmw~ip~~~~~kv~~G---h~~~ct~G~f~pdGK 203 (399)
T KOG0296|consen 138 GGEQWKLDQEVEDIEW------LKWHPRAHILLAGSTDG-----SVWMWQIPSQALCKVMSG---HNSPCTCGEFIPDGK 203 (399)
T ss_pred CceEEEeecccCceEE------EEecccccEEEeecCCC-----cEEEEECCCcceeeEecC---CCCCcccccccCCCc
Confidence 34554311111110 11122222666665544 499999877633333221 333444444445677
Q ss_pred EEEEecCCCCCccCeEEEEECCCCc
Q 005043 312 WYIAGGGSRKKRHAETLIFDILKGE 336 (717)
Q Consensus 312 IyV~GG~~~~~~~~dv~~yD~~t~~ 336 (717)
-++.|-.+ ..+.++|+.+..
T Consensus 204 r~~tgy~d-----gti~~Wn~ktg~ 223 (399)
T KOG0296|consen 204 RILTGYDD-----GTIIVWNPKTGQ 223 (399)
T ss_pred eEEEEecC-----ceEEEEecCCCc
Confidence 77666433 247888888763
No 329
>COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion]
Probab=55.04 E-value=2.1e+02 Score=32.45 Aligned_cols=149 Identities=14% Similarity=0.091 Sum_probs=75.8
Q ss_pred EEEEEECCCCcEEEeeecCCCCCCceeeEEEEECCEEEEEccccCCCCCcCcEEEEEcCCCceEeccCCCCCCCCCcccE
Q 005043 174 SVWTFDTETECWSVVEAKGDIPVARSGHTVVRASSVLILFGGEDGKRRKLNDLHMFDLKSLTWLPLHCTGTGPSPRSNHV 253 (717)
Q Consensus 174 ~v~~yD~~t~~W~~l~~~g~~P~~R~~hs~~~~~~~Lyv~GG~~~~~~~~~~v~~yD~~t~~W~~l~~~g~~P~~R~~~a 253 (717)
.++++|+.++.=..+.. .+..-..+...-.+.+|.+..=.+ -..++|.+|+.+.+=.++. .. .....+.
T Consensus 219 ~i~~~~l~~g~~~~i~~---~~g~~~~P~fspDG~~l~f~~~rd----g~~~iy~~dl~~~~~~~Lt---~~-~gi~~~P 287 (425)
T COG0823 219 RIYYLDLNTGKRPVILN---FNGNNGAPAFSPDGSKLAFSSSRD----GSPDIYLMDLDGKNLPRLT---NG-FGINTSP 287 (425)
T ss_pred eEEEEeccCCccceeec---cCCccCCccCCCCCCEEEEEECCC----CCccEEEEcCCCCcceecc---cC-CccccCc
Confidence 57777777665444432 111111111112223333332222 2367999999887744443 11 1222233
Q ss_pred EEEECCcEEEEEcCCCCCCCCCeEEEEECCCCcEEEeecCCCCCCCCcceEEEEECCEEEEEecCCCCCccCeEEEEECC
Q 005043 254 AALYDDKNLLIFGGSSKSKTLNDLYSLDFETMIWTRIKIRGFHPSPRAGCCGVLCGTKWYIAGGGSRKKRHAETLIFDIL 333 (717)
Q Consensus 254 a~~~~~~~lyV~GG~~~~~~~ndv~~yd~~t~~W~~v~~~g~~P~~R~~~sav~~~~~IyV~GG~~~~~~~~dv~~yD~~ 333 (717)
...-+|+.|+..-...+ ..+|+++|++...=+++...+ ....+-...-+++.++|-+..... .++..+|+.
T Consensus 288 s~spdG~~ivf~Sdr~G---~p~I~~~~~~g~~~~riT~~~----~~~~~p~~SpdG~~i~~~~~~~g~--~~i~~~~~~ 358 (425)
T COG0823 288 SWSPDGSKIVFTSDRGG---RPQIYLYDLEGSQVTRLTFSG----GGNSNPVWSPDGDKIVFESSSGGQ--WDIDKNDLA 358 (425)
T ss_pred cCCCCCCEEEEEeCCCC---CcceEEECCCCCceeEeeccC----CCCcCccCCCCCCEEEEEeccCCc--eeeEEeccC
Confidence 33345554444433322 238999999998888876542 111122222344444444433222 568899988
Q ss_pred CCc-EEEeec
Q 005043 334 KGE-WSVAIT 342 (717)
Q Consensus 334 t~~-W~~l~~ 342 (717)
+.. |+.+..
T Consensus 359 ~~~~~~~lt~ 368 (425)
T COG0823 359 SGGKIRILTS 368 (425)
T ss_pred CCCcEEEccc
Confidence 776 888764
No 330
>TIGR01843 type_I_hlyD type I secretion membrane fusion protein, HlyD family. Type I secretion is an ABC transport process that exports proteins, without cleavage of any signal sequence, from the cytosol to extracellular medium across both inner and outer membranes. The secretion signal is found in the C-terminus of the transported protein. This model represents the adaptor protein between the ATP-binding cassette (ABC) protein of the inner membrane and the outer membrane protein, and is called the membrane fusion protein. This model selects a subfamily closely related to HlyD; it is defined narrowly and excludes, for example, colicin V secretion protein CvaA and multidrug efflux proteins.
Probab=54.90 E-value=61 Score=35.98 Aligned_cols=10 Identities=30% Similarity=0.594 Sum_probs=3.8
Q ss_pred eehhhhhhhh
Q 005043 694 VFHLKQRLQS 703 (717)
Q Consensus 694 ~~~~~~~~~~ 703 (717)
+-.++.+|..
T Consensus 255 l~~~~~~l~~ 264 (423)
T TIGR01843 255 LAELRERLNK 264 (423)
T ss_pred HHHHHHHHHH
Confidence 3333433333
No 331
>PRK03918 chromosome segregation protein; Provisional
Probab=54.85 E-value=63 Score=40.00 Aligned_cols=59 Identities=22% Similarity=0.258 Sum_probs=35.9
Q ss_pred HHHhhHHHHHhhhhhHHhhHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhcccccccc
Q 005043 591 AALVNREAAEKNFSSVLKSRQEMEKKLADSLKEMELLKEKLAGLELAQEEANSLSNIVH 649 (717)
Q Consensus 591 ~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 649 (717)
......+.+++.+..+...+.++++++....++.+.+++++..++.+.++...+.+.+.
T Consensus 663 ~l~~~~~~l~~~l~~l~~~~~~l~~~i~~l~~~i~~~~~~~~~l~~~~~~~~~l~~~~~ 721 (880)
T PRK03918 663 ELREEYLELSRELAGLRAELEELEKRREEIKKTLEKLKEELEEREKAKKELEKLEKALE 721 (880)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344555555666666666666666666666666666666666666666665544433
No 332
>PF05278 PEARLI-4: Arabidopsis phospholipase-like protein (PEARLI 4); InterPro: IPR007942 This family contains several phospholipase-like proteins from Arabidopsis thaliana and other members of the Streptophyta which are homologous to PEARLI 4.
Probab=54.83 E-value=72 Score=33.57 Aligned_cols=72 Identities=18% Similarity=0.316 Sum_probs=33.1
Q ss_pred HHHHHHhhHHHHHhhhhhHHhhHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhcccccccccCCccchhhHHHHHHHH
Q 005043 588 QLAAALVNREAAEKNFSSVLKSRQEMEKKLADSLKEMELLKEKLAGLELAQEEANSLSNIVHSDNVRLEHDVAFLKAVL 666 (717)
Q Consensus 588 ~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 666 (717)
+-.++...|+..++++...-+.-.+++.+|+...+|+..++++++...- .|++ .|-+-.||+.-|.|+|-=.
T Consensus 187 ~~~~~e~eke~~~r~l~~~~~ELe~~~EeL~~~Eke~~e~~~~i~e~~~------rl~~-l~~~~~~l~k~~~~~~sKV 258 (269)
T PF05278_consen 187 QHETREEEKEEKDRKLELKKEELEELEEELKQKEKEVKEIKERITEMKG------RLGE-LEMESTRLSKTIKSIKSKV 258 (269)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHH-HHHHHHHHHHHHHHHHHHH
Confidence 4445555555555555555444444444444444444444444432210 0000 1223346666677776533
No 333
>PRK07353 F0F1 ATP synthase subunit B'; Validated
Probab=54.69 E-value=40 Score=31.52 Aligned_cols=28 Identities=18% Similarity=0.069 Sum_probs=16.9
Q ss_pred HHHHhcchhHHHHHHHhhHHHHHhhhhh
Q 005043 578 LIRKNGILEGQLAAALVNREAAEKNFSS 605 (717)
Q Consensus 578 ~~~~~~~~~~~~~~~~~~~~~~e~~~~~ 605 (717)
+=.|....+++|+.|-..+++|++.++.
T Consensus 34 l~~R~~~I~~~l~~Ae~~~~ea~~~~~~ 61 (140)
T PRK07353 34 VEEREDYIRTNRAEAKERLAEAEKLEAQ 61 (140)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3345556666666666666666665543
No 334
>PF00901 Orbi_VP5: Orbivirus outer capsid protein VP5; InterPro: IPR000145 The orbivirus VP5 protein is one of the two proteins (with VP2) which make up the virus particle outer capsid. Cryoelectron microscopy indicates that VP5 is a trimer suggesting that there are 360 copies of VP5 per virion [].; GO: 0005198 structural molecule activity, 0019028 viral capsid
Probab=54.41 E-value=34 Score=38.66 Aligned_cols=103 Identities=17% Similarity=0.124 Sum_probs=67.2
Q ss_pred HHHHHHHHHHHHhc--c----------hhHHHHHHHhhHHHHHhhhhhHHhhHHHHHHHHHHHHHHHHH-HHHHHhhhhh
Q 005043 570 FYESKMAALIRKNG--I----------LEGQLAAALVNREAAEKNFSSVLKSRQEMEKKLADSLKEMEL-LKEKLAGLEL 636 (717)
Q Consensus 570 ~~~~~~~~~~~~~~--~----------~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~-l~~~~~~~~~ 636 (717)
.|-.-+++++..|- . -|.++..-+...|..+|+-...++--.++.+|.++-++++.. +|-.....+.
T Consensus 58 syGesvKqAVilNVlG~~d~~pDPLsPgE~~l~~Kl~eLE~e~k~d~v~~khn~~I~~k~g~~L~~v~~~~~~~~~~~~~ 137 (508)
T PF00901_consen 58 SYGESVKQAVILNVLGTGDEPPDPLSPGEQGLQRKLKELEDEQKEDEVREKHNKKIIEKFGNDLEKVYKFMKGQEKVEEE 137 (508)
T ss_pred chHHHHHHHHHHHhccCCCCCCCCCCHhHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhh
Confidence 45455555555553 3 378899999999999999999999999999999988877766 3333333334
Q ss_pred hhhhhcccccccccCCccchhhHHHHHHHHHHHHHH
Q 005043 637 AQEEANSLSNIVHSDNVRLEHDVAFLKAVLDDTQKE 672 (717)
Q Consensus 637 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 672 (717)
.+++..-|+.-+-+=..-+++|-.=|+-+-+-+|||
T Consensus 138 e~~q~~~LekAl~~~~~i~~~E~~~l~~L~~AL~kE 173 (508)
T PF00901_consen 138 EENQIEILEKALKSYGKIVKEENKQLDRLARALQKE 173 (508)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444555555555444444555555555555555555
No 335
>COG4447 Uncharacterized protein related to plant photosystem II stability/assembly factor [General function prediction only]
Probab=54.25 E-value=3e+02 Score=29.36 Aligned_cols=246 Identities=14% Similarity=0.151 Sum_probs=122.8
Q ss_pred CCCCeEEeeecCCCCCCcceeEEEEECCEEEEEcccCCCCCcccEEEEEcCCCceEEccccccCCCCCCCCCCCcccceE
Q 005043 72 NSENWMVLSIAGDKPIPRFNHAAAVIGNKMIVVGGESGNGLLDDVQVLNFDRFSWTAASSKLYLSPSSLPLKIPACRGHS 151 (717)
Q Consensus 72 ~s~~W~~l~~~g~~P~~R~~haav~~~~~lyV~GG~~~~~~~~~v~~yd~~t~~W~~l~~~~~~~~~~~~~~~p~r~~hs 151 (717)
..+.|..+...+. .+--.-+.+.-+++.+++||.. .+..-|-..++|.+.-. ...+...|+
T Consensus 30 ap~p~~~velp~~--s~~l~ia~~~~g~~gwlVg~rg------tiletdd~g~tw~qal~-----------~~gr~~f~s 90 (339)
T COG4447 30 APNPWTDVELPTL--SPTLDIAFTESGSHGWLVGGRG------TILETDDGGITWAQALD-----------FLGRHAFHS 90 (339)
T ss_pred CCCcceeeecccc--CcccceeEeecCcceEEEcCcc------eEEEecCCcccchhhhc-----------hhhhhheee
Confidence 4466888862221 2334445555678899999864 34444556678987654 122333455
Q ss_pred EEEECCEEEEEeccCCCCCCceEEEEEECCCCcEEEeeecCCCCCCceeeEEEEEC-CEEEEEccccCCCCCcCcEEEEE
Q 005043 152 LISWGKKVLLVGGKTDSGSDRVSVWTFDTETECWSVVEAKGDIPVARSGHTVVRAS-SVLILFGGEDGKRRKLNDLHMFD 230 (717)
Q Consensus 152 ~v~~~~~Iyv~GG~~~~~~~~~~v~~yD~~t~~W~~l~~~g~~P~~R~~hs~~~~~-~~Lyv~GG~~~~~~~~~~v~~yD 230 (717)
.-..+.+=++.|= .+.++.-+-...+|.+++..-..|.+- .+...++ ..-|++|- ...++.-+
T Consensus 91 v~f~~~egw~vGe-------~sqll~T~DgGqsWARi~~~e~~eg~~--~sI~f~d~q~g~m~gd-------~Gail~T~ 154 (339)
T COG4447 91 VSFLGMEGWIVGE-------PSQLLHTTDGGQSWARIPLSEKLEGFP--DSITFLDDQRGEMLGD-------QGAILKTT 154 (339)
T ss_pred eeeecccccccCC-------cceEEEecCCCcchhhchhhcCCCCCc--ceeEEecchhhhhhcc-------cceEEEec
Confidence 5445554444432 125777777788999998643333332 3344444 34566653 23455545
Q ss_pred cCCCceEeccCCCCCCCCCcccEEEEECCcEEEEEcCCCCCCCCCeEEEEECCCCcEEEeecCCCCCCCCcceEEEEE-C
Q 005043 231 LKSLTWLPLHCTGTGPSPRSNHVAALYDDKNLLIFGGSSKSKTLNDLYSLDFETMIWTRIKIRGFHPSPRAGCCGVLC-G 309 (717)
Q Consensus 231 ~~t~~W~~l~~~g~~P~~R~~~aa~~~~~~~lyV~GG~~~~~~~ndv~~yd~~t~~W~~v~~~g~~P~~R~~~sav~~-~ 309 (717)
-....|+.+.... .+.......+...+++ ++++|-.... .-.++.-...|..-.. ...|..-++..- .
T Consensus 155 DgGk~Wk~l~e~~-v~~~~~n~ia~s~dng-~vaVg~rGs~-----f~T~~aGqt~~~~~g~----~s~~~letmg~ada 223 (339)
T COG4447 155 DGGKNWKALVEKA-VGLAVPNEIARSADNG-YVAVGARGSF-----FSTWGAGQTVWLPHGR----NSSRRLETMGLADA 223 (339)
T ss_pred CCcccHhHhcccc-cchhhhhhhhhhccCC-eEEEecCcce-----EecCCCCccEEeccCC----CccchhcccccccC
Confidence 5567899885332 2211111223344566 5666654310 1122332333332211 122333333332 3
Q ss_pred C--EEEEEecCCCCCccCeEEEEECCCCcEEEeecCCCCCCCCCcceEEEEEEeCCCcEEEEEcC
Q 005043 310 T--KWYIAGGGSRKKRHAETLIFDILKGEWSVAITSPSSSVTSNKGFTLVLVQHKEKDFLVAFGG 372 (717)
Q Consensus 310 ~--~IyV~GG~~~~~~~~dv~~yD~~t~~W~~l~~~p~~~~~~r~g~s~v~v~~~~~~~I~v~GG 372 (717)
+ -+++.||.. +.+......+.|..+.. |.. ..|..++..-+.......+||.|+
T Consensus 224 g~~g~la~g~qg------~~f~~~~~gD~wsd~~~-~~~--~g~~~~Gl~d~a~~a~~~v~v~G~ 279 (339)
T COG4447 224 GSKGLLARGGQG------DQFSWVCGGDEWSDQGE-PVN--LGRRSWGLLDFAPRAPPEVWVSGI 279 (339)
T ss_pred CccceEEEcccc------ceeecCCCccccccccc-chh--cccCCCccccccccCCCCeEEecc
Confidence 3 577778753 23445566788988753 222 233333333332323455776666
No 336
>PRK13454 F0F1 ATP synthase subunit B'; Provisional
Probab=53.77 E-value=45 Score=32.98 Aligned_cols=40 Identities=28% Similarity=0.300 Sum_probs=20.0
Q ss_pred HHhcchhHHHHHHHhhHHHHHhhhhhHHhhHHHHHHHHHHHHHHHHH
Q 005043 580 RKNGILEGQLAAALVNREAAEKNFSSVLKSRQEMEKKLADSLKEMEL 626 (717)
Q Consensus 580 ~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~ 626 (717)
.|....++.|..|-..+++|++.+ ++.|++|+++.+|...
T Consensus 62 ~R~~~I~~~l~~Ae~~~~eA~~~~-------~eye~~L~~Ar~EA~~ 101 (181)
T PRK13454 62 ERQGTITNDLAAAEELKQKAVEAE-------KAYNKALADARAEAQR 101 (181)
T ss_pred HHHHHHHhHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHH
Confidence 344555556655555555555544 3444444444444433
No 337
>PRK02224 chromosome segregation protein; Provisional
Probab=53.75 E-value=28 Score=43.15 Aligned_cols=35 Identities=17% Similarity=0.061 Sum_probs=20.3
Q ss_pred HHHHHHHHHHHHHHHhcchhHHHHHHHhhHHHHHh
Q 005043 567 IYQFYESKMAALIRKNGILEGQLAAALVNREAAEK 601 (717)
Q Consensus 567 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~ 601 (717)
+...+..++..+-..-..|+.++..+-..++.+++
T Consensus 469 ~~~~~~~~~~~~~~~~~~le~~l~~~~~~~e~l~~ 503 (880)
T PRK02224 469 TIEEDRERVEELEAELEDLEEEVEEVEERLERAED 503 (880)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34556666666665666666666655555554433
No 338
>KOG3433 consensus Protein involved in meiotic recombination/predicted coiled-coil protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=53.59 E-value=91 Score=30.75 Aligned_cols=37 Identities=30% Similarity=0.264 Sum_probs=26.4
Q ss_pred HhhhhhHHhhHH-HHHHHHHHHHHHHHHHHHHHhhhhh
Q 005043 600 EKNFSSVLKSRQ-EMEKKLADSLKEMELLKEKLAGLEL 636 (717)
Q Consensus 600 e~~~~~~~~~~~-~~~~~~~~~~~~~~~l~~~~~~~~~ 636 (717)
+|..-.-++.|+ ++++||-...++.|.||.+|+..+.
T Consensus 107 ~K~~~e~tEer~~el~kklnslkk~~e~lr~el~k~~e 144 (203)
T KOG3433|consen 107 RKAGREETEERTDELTKKLNSLKKILESLRWELAKIQE 144 (203)
T ss_pred HHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 334444477777 8888888887878888888877653
No 339
>KOG0018 consensus Structural maintenance of chromosome protein 1 (sister chromatid cohesion complex Cohesin, subunit SMC1) [Cell cycle control, cell division, chromosome partitioning]
Probab=53.59 E-value=58 Score=40.26 Aligned_cols=100 Identities=19% Similarity=0.194 Sum_probs=76.5
Q ss_pred HHHHHHHHHHHHhcchhHHHHHHHhhHHHHHhhhhhHHhhHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhcccccccc
Q 005043 570 FYESKMAALIRKNGILEGQLAAALVNREAAEKNFSSVLKSRQEMEKKLADSLKEMELLKEKLAGLELAQEEANSLSNIVH 649 (717)
Q Consensus 570 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 649 (717)
-=++++..|..+...|..||....- ..+.+++|--.+.-+|.+++-+..+++.+|..|...++.-...+++-+..-
T Consensus 649 wdek~~~~L~~~k~rl~eel~ei~~----~~~e~~~v~~~i~~le~~~~~~~~~~~~~k~~l~~~~~El~~~~~~i~~~~ 724 (1141)
T KOG0018|consen 649 WDEKEVDQLKEKKERLLEELKEIQK----RRKEVSSVESKIHGLEMRLKYSKLDLEQLKRSLEQNELELQRTESEIDEFG 724 (1141)
T ss_pred cCHHHHHHHHHHHHHHHHHHHHHHH----hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhC
Confidence 4578899999999999999988776 344889999999999999999999999999888888776666666544443
Q ss_pred cCCccchhhHHHHHHHHHHHHHHh
Q 005043 650 SDNVRLEHDVAFLKAVLDDTQKEL 673 (717)
Q Consensus 650 ~~~~~~~~~~~~~~~~~~~~~~~~ 673 (717)
..=.-+++++-=.+--++++|++.
T Consensus 725 p~i~~i~r~l~~~e~~~~~L~~~~ 748 (1141)
T KOG0018|consen 725 PEISEIKRKLQNREGEMKELEERM 748 (1141)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHH
Confidence 333355666666666666666554
No 340
>TIGR03017 EpsF chain length determinant protein EpsF. Sequences in this family of proteins are members of the chain length determinant family (pfam02706) which includes the wzc protein from E.coli. This family of proteins are homologous to the EpsF protein of the methanolan biosynthesis operon of Methylobacillus species strain 12S. The distribution of this protein appears to be restricted to a subset of exopolysaccharide operons containing a syntenic grouping of genes including a variant of the EpsH exosortase protein. Exosortase has been proposed to be involved in the targetting and processing of proteins containing the PEP-CTERM domain to the exopolysaccharide layer.
Probab=53.05 E-value=1.3e+02 Score=33.93 Aligned_cols=58 Identities=21% Similarity=0.233 Sum_probs=40.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhcccccccccCCccchhhHHHHHHHHHHHHHHhhhhcc
Q 005043 610 RQEMEKKLADSLKEMELLKEKLAGLELAQEEANSLSNIVHSDNVRLEHDVAFLKAVLDDTQKELHSTRG 678 (717)
Q Consensus 610 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 678 (717)
.+.+..+++.+...++.+|+++..+...+-+. .+|++|+.+-+.+.+..-+-+..+|=
T Consensus 313 ~~~~~~~~~~l~~~l~~~~~~~~~l~~~~~~~-----------~~L~r~~~~~~~~y~~ll~r~~e~~l 370 (444)
T TIGR03017 313 SRILKQREAELREALENQKAKVLELNRQRDEM-----------SVLQRDVENAQRAYDAAMQRYTQTRI 370 (444)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33455556666666666666666555554443 46999999999999998887777763
No 341
>PRK13460 F0F1 ATP synthase subunit B; Provisional
Probab=52.78 E-value=1.3e+02 Score=29.43 Aligned_cols=32 Identities=16% Similarity=0.042 Sum_probs=20.9
Q ss_pred HHHHhcchhHHHHHHHhhHHHHHhhhhhHHhh
Q 005043 578 LIRKNGILEGQLAAALVNREAAEKNFSSVLKS 609 (717)
Q Consensus 578 ~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~ 609 (717)
+=.|....+++|..|-..+++|++.+...-+-
T Consensus 45 l~~R~~~I~~~l~~Ae~~~~eA~~~~~e~e~~ 76 (173)
T PRK13460 45 LDERASGVQNDINKASELRLEAEALLKDYEAR 76 (173)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44566667777777777777777766654333
No 342
>PRK14472 F0F1 ATP synthase subunit B; Provisional
Probab=52.56 E-value=57 Score=31.95 Aligned_cols=45 Identities=13% Similarity=0.023 Sum_probs=25.9
Q ss_pred chhHHHHHHHhhHHHHHhhhhhHHhhHHHHHHHHHHHHHHHHHHH
Q 005043 584 ILEGQLAAALVNREAAEKNFSSVLKSRQEMEKKLADSLKEMELLK 628 (717)
Q Consensus 584 ~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 628 (717)
.|+..=+....+.++||+....+-+-.++.+++|+++.+|...+.
T Consensus 46 ~l~~R~~~I~~~l~~Ae~~~~eA~~~~~e~e~~L~~a~~ea~~ii 90 (175)
T PRK14472 46 ALEEREKGIQSSIDRAHSAKDEAEAILRKNRELLAKADAEADKII 90 (175)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455555555555566666666666666666666666655555533
No 343
>COG1842 PspA Phage shock protein A (IM30), suppresses sigma54-dependent transcription [Transcription / Signal transduction mechanisms]
Probab=52.07 E-value=88 Score=32.18 Aligned_cols=68 Identities=18% Similarity=0.295 Sum_probs=53.1
Q ss_pred HHHHHHHHHHHHHHHhc----chhHHHHHHHhhHHHHHhhhhhHHhhHHHHHHHHHHHHHHHHHHHHHHhhh
Q 005043 567 IYQFYESKMAALIRKNG----ILEGQLAAALVNREAAEKNFSSVLKSRQEMEKKLADSLKEMELLKEKLAGL 634 (717)
Q Consensus 567 ~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 634 (717)
+-......+..++.+.+ +|++-+.++....-+|.+.++.++-....+|+++......++.+.++--.+
T Consensus 7 ~~~~~~a~~~~~~dk~EDp~~~l~Q~ird~~~~l~~ar~~~A~~~a~~k~~e~~~~~~~~~~~k~e~~A~~A 78 (225)
T COG1842 7 LKDLVKANINELLDKAEDPEKMLEQAIRDMESELAKARQALAQAIARQKQLERKLEEAQARAEKLEEKAELA 78 (225)
T ss_pred HHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44556666666666665 677777778888888899999999999999999999999999888775433
No 344
>KOG0293 consensus WD40 repeat-containing protein [Function unknown]
Probab=51.91 E-value=3.6e+02 Score=30.20 Aligned_cols=147 Identities=17% Similarity=0.220 Sum_probs=83.2
Q ss_pred CCEEEEEeccCCCCCCceEEEEEECCCCcEEEeeecCCCCCCceeeEEEEE-CCEEEEEccccCCCCCcCcEEEEEcCCC
Q 005043 156 GKKVLLVGGKTDSGSDRVSVWTFDTETECWSVVEAKGDIPVARSGHTVVRA-SSVLILFGGEDGKRRKLNDLHMFDLKSL 234 (717)
Q Consensus 156 ~~~Iyv~GG~~~~~~~~~~v~~yD~~t~~W~~l~~~g~~P~~R~~hs~~~~-~~~Lyv~GG~~~~~~~~~~v~~yD~~t~ 234 (717)
+++-++..|... .++.+|..|+.-...-+.+ ..-+..+++.+ ++.-+|.|+.+ ..+..+|...+
T Consensus 280 DdryLlaCg~~e------~~~lwDv~tgd~~~~y~~~---~~~S~~sc~W~pDg~~~V~Gs~d------r~i~~wdlDgn 344 (519)
T KOG0293|consen 280 DDRYLLACGFDE------VLSLWDVDTGDLRHLYPSG---LGFSVSSCAWCPDGFRFVTGSPD------RTIIMWDLDGN 344 (519)
T ss_pred CCCeEEecCchH------heeeccCCcchhhhhcccC---cCCCcceeEEccCCceeEecCCC------CcEEEecCCcc
Confidence 555555555532 4888888887654432211 11222333333 56778888765 45778888654
Q ss_pred ---ceEeccCCCCCCCCCcccEEEEECCcEEEEEcCCCCCCCCCeEEEEECCCCcEEEeecCCCCCCCCcceEEEE-ECC
Q 005043 235 ---TWLPLHCTGTGPSPRSNHVAALYDDKNLLIFGGSSKSKTLNDLYSLDFETMIWTRIKIRGFHPSPRAGCCGVL-CGT 310 (717)
Q Consensus 235 ---~W~~l~~~g~~P~~R~~~aa~~~~~~~lyV~GG~~~~~~~ndv~~yd~~t~~W~~v~~~g~~P~~R~~~sav~-~~~ 310 (717)
.|.-+. .|+....+...+|+++++++-. ..+..|+.++..=..+... -.+ .++... -++
T Consensus 345 ~~~~W~gvr------~~~v~dlait~Dgk~vl~v~~d------~~i~l~~~e~~~dr~lise---~~~--its~~iS~d~ 407 (519)
T KOG0293|consen 345 ILGNWEGVR------DPKVHDLAITYDGKYVLLVTVD------KKIRLYNREARVDRGLISE---EQP--ITSFSISKDG 407 (519)
T ss_pred hhhcccccc------cceeEEEEEcCCCcEEEEEecc------cceeeechhhhhhhccccc---cCc--eeEEEEcCCC
Confidence 587664 2566666677788877777621 3477788776544422221 111 222222 256
Q ss_pred EEEEEecCCCCCccCeEEEEECCCCcEEEee
Q 005043 311 KWYIAGGGSRKKRHAETLIFDILKGEWSVAI 341 (717)
Q Consensus 311 ~IyV~GG~~~~~~~~dv~~yD~~t~~W~~l~ 341 (717)
++.++-=.+ .++..+|++ .|..+.
T Consensus 408 k~~LvnL~~-----qei~LWDl~--e~~lv~ 431 (519)
T KOG0293|consen 408 KLALVNLQD-----QEIHLWDLE--ENKLVR 431 (519)
T ss_pred cEEEEEccc-----CeeEEeecc--hhhHHH
Confidence 776665433 468888887 555543
No 345
>PF15188 CCDC-167: Coiled-coil domain-containing protein 167
Probab=51.87 E-value=38 Score=29.27 Aligned_cols=46 Identities=37% Similarity=0.390 Sum_probs=29.7
Q ss_pred cchhHHHHHHHhhHHHHHhhhhhH---HhhHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 005043 583 GILEGQLAAALVNREAAEKNFSSV---LKSRQEMEKKLADSLKEMELLKEKLAGLE 635 (717)
Q Consensus 583 ~~~~~~~~~~~~~~~~~e~~~~~~---~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 635 (717)
..+|..|+.-....|++|++|-.. -+.|+.+| +|+..||+++...|
T Consensus 8 d~lEekl~~cr~~le~ve~rL~~~eLs~e~R~~lE-------~E~~~l~~~l~~~E 56 (85)
T PF15188_consen 8 DGLEEKLAQCRRRLEAVESRLRRRELSPEARRSLE-------KELNELKEKLENNE 56 (85)
T ss_pred hhHHHHHHHHHHHHHHHHHHHcccCCChHHHHHHH-------HHHHHHHHHhhccH
Confidence 346666777777778888877665 45677777 45555555555544
No 346
>PF07889 DUF1664: Protein of unknown function (DUF1664); InterPro: IPR012458 The members of this family are hypothetical plant proteins of unknown function. The region featured in this family is approximately 100 amino acids long.
Probab=51.71 E-value=1.1e+02 Score=28.64 Aligned_cols=54 Identities=11% Similarity=0.144 Sum_probs=22.6
Q ss_pred hcchhHHHHHHHhhHHHHHhhhhhHHhhHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 005043 582 NGILEGQLAAALVNREAAEKNFSSVLKSRQEMEKKLADSLKEMELLKEKLAGLE 635 (717)
Q Consensus 582 ~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 635 (717)
-..|..+|++..+--++..+.+..+-+.-.++..++..+-.-++.|.-||..+|
T Consensus 70 Id~vd~klDe~~ei~~~i~~eV~~v~~dv~~i~~dv~~v~~~V~~Le~ki~~ie 123 (126)
T PF07889_consen 70 IDRVDDKLDEQKEISKQIKDEVTEVREDVSQIGDDVDSVQQMVEGLEGKIDEIE 123 (126)
T ss_pred HHHHHhhHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 333444444444444444444444444444444444444444444444444333
No 347
>PRK13455 F0F1 ATP synthase subunit B; Provisional
Probab=51.52 E-value=61 Score=32.03 Aligned_cols=29 Identities=24% Similarity=0.235 Sum_probs=17.3
Q ss_pred HHHHhcchhHHHHHHHhhHHHHHhhhhhH
Q 005043 578 LIRKNGILEGQLAAALVNREAAEKNFSSV 606 (717)
Q Consensus 578 ~~~~~~~~~~~~~~~~~~~~~~e~~~~~~ 606 (717)
+=.|.....++|.+|-..+++|++.+...
T Consensus 56 L~~R~~~I~~~l~~Ae~~~~eA~~~l~e~ 84 (184)
T PRK13455 56 LDKRAEGIRSELEEARALREEAQTLLASY 84 (184)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44455566666666666666666655443
No 348
>KOG1003 consensus Actin filament-coating protein tropomyosin [Cytoskeleton]
Probab=51.51 E-value=1.5e+02 Score=29.73 Aligned_cols=93 Identities=31% Similarity=0.332 Sum_probs=57.3
Q ss_pred HHHHHHHHHHHHHhcchhHHHHHHHhhHHHHHh--------------hhhhHHhhHHHHHHHHHHHHHHHHHHHHHHhhh
Q 005043 569 QFYESKMAALIRKNGILEGQLAAALVNREAAEK--------------NFSSVLKSRQEMEKKLADSLKEMELLKEKLAGL 634 (717)
Q Consensus 569 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~--------------~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 634 (717)
+.-..|-.-.+|+-.+.||+|..+-..-|++|. ||-++-.+-+.++.++....+++-.|-+||--+
T Consensus 77 E~adrK~eEVarkL~iiE~dLE~~eeraE~~Es~~~eLeEe~~~~~~nlk~l~~~ee~~~q~~d~~e~~ik~ltdKLkEa 156 (205)
T KOG1003|consen 77 EKADRKYEEVARKLVIIEGELERAEERAEAAESQSEELEEDLRILDSNLKSLSAKEEKLEQKEEKYEEELKELTDKLKEA 156 (205)
T ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhhh
Confidence 333445666788888999999999888888876 445555555666666666666666666666555
Q ss_pred hhhhhhhcccccccccCCccchhhHHHHHHHHHHHHHHhhh
Q 005043 635 ELAQEEANSLSNIVHSDNVRLEHDVAFLKAVLDDTQKELHS 675 (717)
Q Consensus 635 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 675 (717)
|.--|- .|+=||-|--=.||.+..|-.
T Consensus 157 E~rAE~--------------aERsVakLeke~DdlE~kl~~ 183 (205)
T KOG1003|consen 157 ETRAEF--------------AERRVAKLEKERDDLEEKLEE 183 (205)
T ss_pred hhhHHH--------------HHHHHHHHcccHHHHHHhhHH
Confidence 532222 234455555555555554433
No 349
>PF14362 DUF4407: Domain of unknown function (DUF4407)
Probab=51.28 E-value=1.1e+02 Score=32.61 Aligned_cols=63 Identities=17% Similarity=0.176 Sum_probs=28.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhcccccccccCCccchhhHHHHHHHHHHHHHHhhhhccchh
Q 005043 610 RQEMEKKLADSLKEMELLKEKLAGLELAQEEANSLSNIVHSDNVRLEHDVAFLKAVLDDTQKELHSTRGVLA 681 (717)
Q Consensus 610 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 681 (717)
.++.+.++.....+.+.++.++...+.+-+.... -+++..-+.-.+++.+.|..-.+..|.|+
T Consensus 184 ~~~~~~~~~~~~~~l~~l~~~~~~~~~~l~~~~~---------~~~~~l~~~~~~~~a~~~~~~~~~~G~l~ 246 (301)
T PF14362_consen 184 YKEKRAQLDAAQAELDTLQAQIDAAIAALDAQIA---------ARKARLDEARQAKVAEFQAIISANDGFLA 246 (301)
T ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhhHH---------HHHHHHHHHHHHHHHHHhHhhccCCCHHH
Confidence 3444555555555555555554433322221111 23333344444555555555555666554
No 350
>PF05701 WEMBL: Weak chloroplast movement under blue light; InterPro: IPR008545 This family consists of several plant proteins of unknown function. Several sequences in this family are described as being myosin heavy chain-like.
Probab=51.08 E-value=40 Score=39.23 Aligned_cols=28 Identities=32% Similarity=0.539 Sum_probs=15.7
Q ss_pred HhhHHHHHHHHHHHHHHHHHHHHHHhhh
Q 005043 607 LKSRQEMEKKLADSLKEMELLKEKLAGL 634 (717)
Q Consensus 607 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 634 (717)
+...+.++.||+.+..+++.|+..|...
T Consensus 234 ~~~~k~Le~kL~~a~~~l~~Lq~El~~~ 261 (522)
T PF05701_consen 234 LEAAKDLESKLAEASAELESLQAELEAA 261 (522)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455666666666666665555544433
No 351
>COG4880 Secreted protein containing C-terminal beta-propeller domain distantly related to WD-40 repeats [General function prediction only]
Probab=51.07 E-value=3.8e+02 Score=30.20 Aligned_cols=182 Identities=16% Similarity=0.198 Sum_probs=92.3
Q ss_pred CCCcccEEEEEcCCCceEEccccccCCCCCCCCCCCcccceEEEEECCEEEEEeccCCCCCCceEEEEEECCCCcEEEee
Q 005043 110 NGLLDDVQVLNFDRFSWTAASSKLYLSPSSLPLKIPACRGHSLISWGKKVLLVGGKTDSGSDRVSVWTFDTETECWSVVE 189 (717)
Q Consensus 110 ~~~~~~v~~yd~~t~~W~~l~~~~~~~~~~~~~~~p~r~~hs~v~~~~~Iyv~GG~~~~~~~~~~v~~yD~~t~~W~~l~ 189 (717)
....|+++++|-.-+.--.++. +.+..| -+++-.+++.+|++-=.. .+-+++.|+..-.=-++
T Consensus 402 de~~N~vYilDe~lnvvGkltG----------l~~gER-IYAvRf~gdv~yiVTfrq-----tDPlfviDlsNPenPkv- 464 (603)
T COG4880 402 DEPVNAVYILDENLNVVGKLTG----------LAPGER-IYAVRFVGDVLYIVTFRQ-----TDPLFVIDLSNPENPKV- 464 (603)
T ss_pred CCccceeEEEcCCCcEEEEEec----------cCCCce-EEEEEEeCceEEEEEEec-----cCceEEEEcCCCCCCce-
Confidence 4567899999988877666665 223333 466677788888874432 33477777765321111
Q ss_pred ecCCCCCCceeeEEEEEC-CEEEEEccccCCCCCcCcEEEEEcCCC-------------ceEeccCCCCCCCCCcccEEE
Q 005043 190 AKGDIPVARSGHTVVRAS-SVLILFGGEDGKRRKLNDLHMFDLKSL-------------TWLPLHCTGTGPSPRSNHVAA 255 (717)
Q Consensus 190 ~~g~~P~~R~~hs~~~~~-~~Lyv~GG~~~~~~~~~~v~~yD~~t~-------------~W~~l~~~g~~P~~R~~~aa~ 255 (717)
.|.+..|-+..-.-.++ +.+.=+|-..+. -.+-.||...- -|+ |.-+.+|+ .
T Consensus 465 -lGeLKIPGfS~YLHpigen~~lGvG~~~g~----vKiSLFdiSdl~~PkEv~~y~l~~~ws--------pvf~dhHA-F 530 (603)
T COG4880 465 -LGELKIPGFSEYLHPIGENRLLGVGAYQGG----VKISLFDISDLAAPKEVSNYTLSNAWS--------PVFYDHHA-F 530 (603)
T ss_pred -eEEEecCCchhhccccCCCcEEEeecccCC----ceEEEEeccCCCCchhhhheehhhhcc--------hhhhccce-e
Confidence 11222222222222333 455555544432 24555665322 233 23344454 4
Q ss_pred EECCc-EEEEEcCCCCCCCCCeEEEEECCCCcEEEeecCCCCCCCCcceEEEEECCEEEEEecCCCCCccCeEEEEECCC
Q 005043 256 LYDDK-NLLIFGGSSKSKTLNDLYSLDFETMIWTRIKIRGFHPSPRAGCCGVLCGTKWYIAGGGSRKKRHAETLIFDILK 334 (717)
Q Consensus 256 ~~~~~-~lyV~GG~~~~~~~ndv~~yd~~t~~W~~v~~~g~~P~~R~~~sav~~~~~IyV~GG~~~~~~~~dv~~yD~~t 334 (717)
.++.+ .|+.+--+. .-++|-.+.+. ..+... -.....-.+..+++.+|++|| +++|.||-
T Consensus 531 l~d~~~~ifFlPay~------~gyif~iedg~-kl~k~~---e~k~na~RA~fi~dylY~vg~-------~ev~~lde-- 591 (603)
T COG4880 531 LYDPEAEIFFLPAYL------GGYIFFIEDGS-KLRKRA---ERKLNADRAFFIKDYLYLVGG-------NEVWKLDE-- 591 (603)
T ss_pred ecCCcccEEEecccC------ccEEEEEecCc-eeeehh---hhcccceeeEEecceEEEecc-------ceeEEecc--
Confidence 44443 244433221 12344444441 111110 011112235567999999999 57899875
Q ss_pred CcEEEee
Q 005043 335 GEWSVAI 341 (717)
Q Consensus 335 ~~W~~l~ 341 (717)
+.|..+.
T Consensus 592 nswe~Vg 598 (603)
T COG4880 592 NSWEVVG 598 (603)
T ss_pred chHhhhh
Confidence 5687764
No 352
>PF14193 DUF4315: Domain of unknown function (DUF4315)
Probab=50.98 E-value=31 Score=29.72 Aligned_cols=58 Identities=24% Similarity=0.346 Sum_probs=37.3
Q ss_pred hhhHHhhHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhcc--cccccccCCccchhhHHHHHHHHH
Q 005043 603 FSSVLKSRQEMEKKLADSLKEMELLKEKLAGLELAQEEANS--LSNIVHSDNVRLEHDVAFLKAVLD 667 (717)
Q Consensus 603 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~ 667 (717)
+.-|.+.++..++|+++... ||-.+|....|+.| +-.||++=++..|.=-+||++.-+
T Consensus 3 leKi~~eieK~k~Kiae~Q~-------rlK~Le~qk~E~EN~EIv~~VR~~~mtp~eL~~~L~~~~~ 62 (83)
T PF14193_consen 3 LEKIRAEIEKTKEKIAELQA-------RLKELEAQKTEAENLEIVQMVRSMKMTPEELAAFLRAMKS 62 (83)
T ss_pred HHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHh
Confidence 33444555555555555444 44444444444444 678999999999999999988644
No 353
>KOG2148 consensus Exocyst protein Sec3 [Intracellular trafficking, secretion, and vesicular transport]
Probab=50.91 E-value=42 Score=39.23 Aligned_cols=84 Identities=26% Similarity=0.304 Sum_probs=58.9
Q ss_pred hcchhHHHHHHHhhHHHHHhhhhhHHhhHHHHHHH---HHHHHHHHHHHHHHHhhhhhh----------hhhhccccccc
Q 005043 582 NGILEGQLAAALVNREAAEKNFSSVLKSRQEMEKK---LADSLKEMELLKEKLAGLELA----------QEEANSLSNIV 648 (717)
Q Consensus 582 ~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~---~~~~~~~~~~l~~~~~~~~~~----------~~~~~~~~~~~ 648 (717)
+++.-.+|..-|...|.| |.++++.|-+...+- |.++++|++...++|.--|-. =|+.|+|.-|-
T Consensus 191 aeaFaE~L~reLq~LdgA--NiqsilaSE~~Vn~ll~~ldaAl~~vd~~e~~Ld~yediL~hvre~iE~Ieekn~lie~~ 268 (867)
T KOG2148|consen 191 AEAFAERLKRELQALDAA--NIQSILASEPLVNELLNGLDAALNEVDDMEEWLDSYEDILRHVREDIESIEEKNNLIEMQ 268 (867)
T ss_pred HHHHHHHHHHHHHhhhcc--cHHHHHhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccchhhhh
Confidence 345555666666666655 788888887766544 466777777777776654421 17899999999
Q ss_pred ccCCccchhhHHHHHHHHH
Q 005043 649 HSDNVRLEHDVAFLKAVLD 667 (717)
Q Consensus 649 ~~~~~~~~~~~~~~~~~~~ 667 (717)
.-.|++|=.|+-++=--||
T Consensus 269 n~Nn~kL~eEl~kvin~L~ 287 (867)
T KOG2148|consen 269 NVNNKKLIEELDKVINRLD 287 (867)
T ss_pred ccchHHHHHHHHHHHHhcc
Confidence 9999999988887755544
No 354
>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only]
Probab=50.87 E-value=3.2e+02 Score=28.67 Aligned_cols=192 Identities=19% Similarity=0.220 Sum_probs=94.6
Q ss_pred CCEEEEEeccCCCCCCceEEEEEECCCCcEEEeeecCCCCCCceeeEEEE--ECCEEEEEccccCCCCCcCcEEEEEcCC
Q 005043 156 GKKVLLVGGKTDSGSDRVSVWTFDTETECWSVVEAKGDIPVARSGHTVVR--ASSVLILFGGEDGKRRKLNDLHMFDLKS 233 (717)
Q Consensus 156 ~~~Iyv~GG~~~~~~~~~~v~~yD~~t~~W~~l~~~g~~P~~R~~hs~~~--~~~~Lyv~GG~~~~~~~~~~v~~yD~~t 233 (717)
+++.+..+|.. .|-.||+.++.=..+.. .-..+..-+++- .+++-..-||.++. +-++|+.+
T Consensus 51 dk~~LAaa~~q-------hvRlyD~~S~np~Pv~t---~e~h~kNVtaVgF~~dgrWMyTgseDgt------~kIWdlR~ 114 (311)
T KOG0315|consen 51 DKKDLAAAGNQ-------HVRLYDLNSNNPNPVAT---FEGHTKNVTAVGFQCDGRWMYTGSEDGT------VKIWDLRS 114 (311)
T ss_pred CcchhhhccCC-------eeEEEEccCCCCCceeE---EeccCCceEEEEEeecCeEEEecCCCce------EEEEeccC
Confidence 44555566642 58899988764211110 111122222322 46777777776654 55667765
Q ss_pred CceEeccCCCCCCCCCcccEEEEECCcEEEEEcCCCCCCCCCeEEEEECCCCcEEEeecCCCCCCCCcc-eEEEEE-CCE
Q 005043 234 LTWLPLHCTGTGPSPRSNHVAALYDDKNLLIFGGSSKSKTLNDLYSLDFETMIWTRIKIRGFHPSPRAG-CCGVLC-GTK 311 (717)
Q Consensus 234 ~~W~~l~~~g~~P~~R~~~aa~~~~~~~lyV~GG~~~~~~~ndv~~yd~~t~~W~~v~~~g~~P~~R~~-~sav~~-~~~ 311 (717)
-.-.+.- ..+.| --+.+.+.+..=+|.|-.++ .|+++|+.++.-+.... |..-.. .++++. +++
T Consensus 115 ~~~qR~~---~~~sp--Vn~vvlhpnQteLis~dqsg-----~irvWDl~~~~c~~~li----Pe~~~~i~sl~v~~dgs 180 (311)
T KOG0315|consen 115 LSCQRNY---QHNSP--VNTVVLHPNQTELISGDQSG-----NIRVWDLGENSCTHELI----PEDDTSIQSLTVMPDGS 180 (311)
T ss_pred cccchhc---cCCCC--cceEEecCCcceEEeecCCC-----cEEEEEccCCccccccC----CCCCcceeeEEEcCCCc
Confidence 3333221 12222 22345555553344444433 49999999886665432 332222 233333 555
Q ss_pred EEEEecCCCCCccCeEEEEECCCCcE-EEeecCCCCCCCCCcceEEEEEEeCCCcEEEEEcCCCCCCCCeEEEEEccCC
Q 005043 312 WYIAGGGSRKKRHAETLIFDILKGEW-SVAITSPSSSVTSNKGFTLVLVQHKEKDFLVAFGGIKKEPSNQVEVLSIEKN 389 (717)
Q Consensus 312 IyV~GG~~~~~~~~dv~~yD~~t~~W-~~l~~~p~~~~~~r~g~s~v~v~~~~~~~I~v~GG~~~~~~n~v~vyd~~~~ 389 (717)
+++.+-..+ ..|++++-+..- +.+. |.....++.+|..-+...++.. .++.-+.+. .+.+++.+..
T Consensus 181 ml~a~nnkG-----~cyvW~l~~~~~~s~l~--P~~k~~ah~~~il~C~lSPd~k-~lat~ssdk----tv~iwn~~~~ 247 (311)
T KOG0315|consen 181 MLAAANNKG-----NCYVWRLLNHQTASELE--PVHKFQAHNGHILRCLLSPDVK-YLATCSSDK----TVKIWNTDDF 247 (311)
T ss_pred EEEEecCCc-----cEEEEEccCCCccccce--EhhheecccceEEEEEECCCCc-EEEeecCCc----eEEEEecCCc
Confidence 554443322 366666655322 2222 3333456777777666555444 444444332 4555555544
No 355
>COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion]
Probab=50.87 E-value=4.2e+02 Score=30.02 Aligned_cols=106 Identities=10% Similarity=0.088 Sum_probs=57.8
Q ss_pred eEEEEEECCCCcEEEeeecCCCCCCceeeEEEE-ECCEEEEEccccCCCCCcCcEEEEEcCCCceEeccCCCCCCCCCcc
Q 005043 173 VSVWTFDTETECWSVVEAKGDIPVARSGHTVVR-ASSVLILFGGEDGKRRKLNDLHMFDLKSLTWLPLHCTGTGPSPRSN 251 (717)
Q Consensus 173 ~~v~~yD~~t~~W~~l~~~g~~P~~R~~hs~~~-~~~~Lyv~GG~~~~~~~~~~v~~yD~~t~~W~~l~~~g~~P~~R~~ 251 (717)
.++|.+|+.+..-..+.. ......+-... .+.+|+..-.+. + ...+++||+....=+.+...+ ....
T Consensus 262 ~~iy~~dl~~~~~~~Lt~----~~gi~~~Ps~spdG~~ivf~Sdr~--G--~p~I~~~~~~g~~~~riT~~~----~~~~ 329 (425)
T COG0823 262 PDIYLMDLDGKNLPRLTN----GFGINTSPSWSPDGSKIVFTSDRG--G--RPQIYLYDLEGSQVTRLTFSG----GGNS 329 (425)
T ss_pred ccEEEEcCCCCcceeccc----CCccccCccCCCCCCEEEEEeCCC--C--CcceEEECCCCCceeEeeccC----CCCc
Confidence 379999998877333331 12222232223 334444442222 2 348999999988777665321 1111
Q ss_pred cEEEEECCcEEEEEcCCCCCCCCCeEEEEECCCCc-EEEeecC
Q 005043 252 HVAALYDDKNLLIFGGSSKSKTLNDLYSLDFETMI-WTRIKIR 293 (717)
Q Consensus 252 ~aa~~~~~~~lyV~GG~~~~~~~ndv~~yd~~t~~-W~~v~~~ 293 (717)
+....-+++.|.+.+ ..... -++..+|+.++. |+.+...
T Consensus 330 ~p~~SpdG~~i~~~~-~~~g~--~~i~~~~~~~~~~~~~lt~~ 369 (425)
T COG0823 330 NPVWSPDGDKIVFES-SSGGQ--WDIDKNDLASGGKIRILTST 369 (425)
T ss_pred CccCCCCCCEEEEEe-ccCCc--eeeEEeccCCCCcEEEcccc
Confidence 333344555444444 32222 568999997777 8887653
No 356
>PF02050 FliJ: Flagellar FliJ protein; InterPro: IPR012823 Many flagellar proteins are exported by a flagellum-specific export pathway. Attempts have been made to characterise the apparatus responsible for this process, by designing assays to screen for mutants with export defects []. Experiments involving filament removal from temperature-sensitive flagellar mutants of Salmonella typhimurium have shown that, while most mutants were able to regrow filaments, flhA, fliH, fliI and fliN mutants showed no or greatly reduced regrowth. This suggests that the corresponding gene products are involved in the process of flagellum-specific export. The sequences of fliH, fliI and the adjacent gene, fliJ, have been deduced. FliJ was shown to encode a protein of molecular mass 17,302 Da []. It is a membrane-associated protein that affects chemotactic events, mutations in FliJ result in failure to respond to chemotactic stimuli.; GO: 0003774 motor activity, 0001539 ciliary or flagellar motility, 0006935 chemotaxis, 0009288 bacterial-type flagellum, 0016020 membrane, 0044461 bacterial-type flagellum part; PDB: 3AJW_A.
Probab=50.85 E-value=86 Score=27.68 Aligned_cols=27 Identities=22% Similarity=0.293 Sum_probs=11.5
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHhhh
Q 005043 608 KSRQEMEKKLADSLKEMELLKEKLAGL 634 (717)
Q Consensus 608 ~~~~~~~~~~~~~~~~~~~l~~~~~~~ 634 (717)
...++++..++.+.++++.+++.+..+
T Consensus 59 ~~i~~~~~~~~~~~~~~~~~r~~l~~a 85 (123)
T PF02050_consen 59 QAIQQQQQELERLEQEVEQAREELQEA 85 (123)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444444444444444444444333
No 357
>PRK14475 F0F1 ATP synthase subunit B; Provisional
Probab=50.83 E-value=95 Score=30.16 Aligned_cols=39 Identities=13% Similarity=0.150 Sum_probs=18.7
Q ss_pred HhcchhHHHHHHHhhHHHHHhhhhhHHhhHHHHHHHHHHHHHHHHH
Q 005043 581 KNGILEGQLAAALVNREAAEKNFSSVLKSRQEMEKKLADSLKEMEL 626 (717)
Q Consensus 581 ~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~ 626 (717)
|.....+.|..|-..|++|| +.+++.|++|+++.+|...
T Consensus 42 R~~~I~~~l~~Ae~~k~eAe-------~~~~~~e~~L~~A~~ea~~ 80 (167)
T PRK14475 42 YAAKIQAELDEAQRLREEAQ-------ALLADVKAEREEAERQAAA 80 (167)
T ss_pred HHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHH
Confidence 33444444444444444444 4444555555555544444
No 358
>COG4026 Uncharacterized protein containing TOPRIM domain, potential nuclease [General function prediction only]
Probab=50.73 E-value=79 Score=32.09 Aligned_cols=64 Identities=19% Similarity=0.206 Sum_probs=37.2
Q ss_pred HHHHHHHHHHhcchhHHHHHHHhhHHHHHhhhhhHHhhHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 005043 572 ESKMAALIRKNGILEGQLAAALVNREAAEKNFSSVLKSRQEMEKKLADSLKEMELLKEKLAGLE 635 (717)
Q Consensus 572 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 635 (717)
+.|+..++..++.|-..|+.-.+..|+...+|.++-...-++|.++....-|+..||.+...+|
T Consensus 141 kekl~E~~~EkeeL~~eleele~e~ee~~erlk~le~E~s~LeE~~~~l~~ev~~L~~r~~ELe 204 (290)
T COG4026 141 KEKLEELQKEKEELLKELEELEAEYEEVQERLKRLEVENSRLEEMLKKLPGEVYDLKKRWDELE 204 (290)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchhHHHHHHHHHHHhc
Confidence 3455555555555555555555555555555555555555666666666666666666665544
No 359
>KOG4403 consensus Cell surface glycoprotein STIM, contains SAM domain [General function prediction only]
Probab=50.72 E-value=99 Score=34.41 Aligned_cols=94 Identities=24% Similarity=0.257 Sum_probs=52.6
Q ss_pred hhHHHHHHHhhHHHHHhhhhhHHhhHHHHHHHHH---------------HHHHHHHHHHHHHhhhhhhhhhhcccccccc
Q 005043 585 LEGQLAAALVNREAAEKNFSSVLKSRQEMEKKLA---------------DSLKEMELLKEKLAGLELAQEEANSLSNIVH 649 (717)
Q Consensus 585 ~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~---------------~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 649 (717)
.|+-|.+.....|-|...---|--.++.+|+||- -..||+|.|++.|..+|..= |+|+=...+-
T Consensus 257 aEqsl~dlQk~Lekar~e~rnvavek~~lerkl~ea~rl~elreg~e~e~~rkelE~lR~~L~kAEkel-e~nS~wsaP~ 335 (575)
T KOG4403|consen 257 AEQSLEDLQKRLEKAREEQRNVAVEKLDLERKLDEAPRLSELREGVENETSRKELEQLRVALEKAEKEL-EANSSWSAPL 335 (575)
T ss_pred HHHHHHHHHHHHHHHHHhhhchhhhhhhHHHHHhhhhhhhhhhcchhHHHHHHHHHHHHHHHHHHHHHH-HhccCCCCcH
Confidence 3444444444333333222222234566677765 23367888998887777544 3454222222
Q ss_pred cC----CccchhhHHHHHHHHHHHHHHhhhhccc
Q 005043 650 SD----NVRLEHDVAFLKAVLDDTQKELHSTRGV 679 (717)
Q Consensus 650 ~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 679 (717)
+= .+.-|-||+|+.---.+..|+|.+.|+.
T Consensus 336 aLQ~wLq~T~E~E~q~~~kkrqnaekql~~Ake~ 369 (575)
T KOG4403|consen 336 ALQKWLQLTHEVEVQYYNKKRQNAEKQLKEAKEM 369 (575)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHH
Confidence 21 2344677899887777778888777653
No 360
>KOG3856 consensus Uncharacterized conserved protein [Function unknown]
Probab=50.54 E-value=26 Score=32.09 Aligned_cols=29 Identities=28% Similarity=0.492 Sum_probs=13.6
Q ss_pred hHHHHHhhhhhHHhhHHHHHHHHHHHHHH
Q 005043 595 NREAAEKNFSSVLKSRQEMEKKLADSLKE 623 (717)
Q Consensus 595 ~~~~~e~~~~~~~~~~~~~~~~~~~~~~~ 623 (717)
+-|+..+.|+..++.||++|..|+++.++
T Consensus 11 ~ye~~kaEL~elikkrqe~eetl~nLe~q 39 (135)
T KOG3856|consen 11 SYEDTKAELAELIKKRQELEETLANLERQ 39 (135)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444455555555444444443
No 361
>COG0497 RecN ATPase involved in DNA repair [DNA replication, recombination, and repair]
Probab=50.37 E-value=53 Score=38.18 Aligned_cols=100 Identities=26% Similarity=0.209 Sum_probs=53.5
Q ss_pred hcchhHHHHHHHhhHHHHHhhhhhHHhhHHHHHHHHHHHHHHHH---HHHHHHhh--------hhhhhhhhccccccccc
Q 005043 582 NGILEGQLAAALVNREAAEKNFSSVLKSRQEMEKKLADSLKEME---LLKEKLAG--------LELAQEEANSLSNIVHS 650 (717)
Q Consensus 582 ~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~---~l~~~~~~--------~~~~~~~~~~~~~~~~~ 650 (717)
...+...|+.|+...++|-..|.-+++.-+-=...|..+..-+. -|++|-.. .+..++|.++|.|.--+
T Consensus 264 l~~~~~~l~ea~~~l~ea~~el~~~~~~le~Dp~~L~~ve~Rl~~L~~l~RKY~~~~~~l~~~~~~~~~el~~L~~~~~~ 343 (557)
T COG0497 264 LSELAELLEEALYELEEASEELRAYLDELEFDPNRLEEVEERLFALKSLARKYGVTIEDLLEYLDKIKEELAQLDNSEES 343 (557)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhhhhhhH
Confidence 34445566666666666655555544432221111222211111 13333222 33344444444433211
Q ss_pred CCccchhhHHHHHHHHHHHHHHhhhhccchhh
Q 005043 651 DNVRLEHDVAFLKAVLDDTQKELHSTRGVLAG 682 (717)
Q Consensus 651 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 682 (717)
=-.||++++=|++=++..-++|+..|--.|.
T Consensus 344 -~~~Le~~~~~l~~~~~~~A~~Ls~~R~~~A~ 374 (557)
T COG0497 344 -LEALEKEVKKLKAELLEAAEALSAIRKKAAK 374 (557)
T ss_pred -HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 1368999999999999999999999976554
No 362
>PF15525 DUF4652: Domain of unknown function (DUF4652)
Probab=50.29 E-value=2.5e+02 Score=28.10 Aligned_cols=71 Identities=8% Similarity=0.074 Sum_probs=41.2
Q ss_pred CcccEEEEEcCCCceEEccccccCCCCCCCCCCCcccceEEEEECCE-EEEEeccCCCCCCceEEEEEECCCCcEEEeee
Q 005043 112 LLDDVQVLNFDRFSWTAASSKLYLSPSSLPLKIPACRGHSLISWGKK-VLLVGGKTDSGSDRVSVWTFDTETECWSVVEA 190 (717)
Q Consensus 112 ~~~~v~~yd~~t~~W~~l~~~~~~~~~~~~~~~p~r~~hs~v~~~~~-Iyv~GG~~~~~~~~~~v~~yD~~t~~W~~l~~ 190 (717)
....+|++|..++.|..+..... + ....|. ...-..+.. ++++|...+.-+.-..+|+|++.++.-+.+..
T Consensus 86 giGkIYIkn~~~~~~~~L~i~~~--~----~k~sPK--~i~WiDD~~L~vIIG~a~GTvS~GGnLy~~nl~tg~~~~ly~ 157 (200)
T PF15525_consen 86 GIGKIYIKNLNNNNWWSLQIDQN--E----EKYSPK--YIEWIDDNNLAVIIGYAHGTVSKGGNLYKYNLNTGNLTELYE 157 (200)
T ss_pred cceeEEEEecCCCceEEEEecCc--c----cccCCc--eeEEecCCcEEEEEccccceEccCCeEEEEEccCCceeEeee
Confidence 45689999999988876643110 0 011111 222222444 55565433333334479999999999888864
No 363
>KOG1853 consensus LIS1-interacting protein NUDE [Cytoskeleton]
Probab=50.21 E-value=1.2e+02 Score=31.46 Aligned_cols=117 Identities=22% Similarity=0.279 Sum_probs=64.7
Q ss_pred HHHHHHHHHHHHHhcchhHHHHHHHhhHHHHHhhhhhHHhhHH----HHHHHHHHHHHHHHHHHHHHhh--hhhhhhhhc
Q 005043 569 QFYESKMAALIRKNGILEGQLAAALVNREAAEKNFSSVLKSRQ----EMEKKLADSLKEMELLKEKLAG--LELAQEEAN 642 (717)
Q Consensus 569 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~----~~~~~~~~~~~~~~~l~~~~~~--~~~~~~~~~ 642 (717)
|+++.--..+++.+...-..|-.-..+--+.|+-|-+-|..-+ .++........|+|-+|||... ++-+|-++
T Consensus 16 ~ywk~l~~~ykq~f~~~reEl~EFQegSrE~EaelesqL~q~etrnrdl~t~nqrl~~E~e~~Kek~e~q~~q~y~q~s- 94 (333)
T KOG1853|consen 16 QYWKLLHHEYKQHFLQMREELNEFQEGSREIEAELESQLDQLETRNRDLETRNQRLTTEQERNKEKQEDQRVQFYQQES- 94 (333)
T ss_pred HHHhhhHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-
Confidence 4444333444555555555555555555555555444332221 2334445566778888888754 33333332
Q ss_pred ccccccccCCccchhhHHHHHHHHHHHHH---Hhhhhccch-hhccccceeeEEEeehhhhhh
Q 005043 643 SLSNIVHSDNVRLEHDVAFLKAVLDDTQK---ELHSTRGVL-AGERARAFQLQVEVFHLKQRL 701 (717)
Q Consensus 643 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~ 701 (717)
-||.|++-++|+-|..+| ||...--+| ..+|+.-+- .-++.|||
T Consensus 95 -----------~Leddlsqt~aikeql~kyiReLEQaNDdLErakRati~s----leDfeqrL 142 (333)
T KOG1853|consen 95 -----------QLEDDLSQTHAIKEQLRKYIRELEQANDDLERAKRATIYS----LEDFEQRL 142 (333)
T ss_pred -----------HHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHhhhhhhhh----HHHHHHHH
Confidence 489999999999999987 454444444 234444332 23555666
No 364
>PF15030 DUF4527: Protein of unknown function (DUF4527)
Probab=49.93 E-value=80 Score=32.46 Aligned_cols=40 Identities=33% Similarity=0.352 Sum_probs=25.9
Q ss_pred hHHhhHHHHHHHHHHHHHHHHH-------HHHHHhhhhhhhhhhccc
Q 005043 605 SVLKSRQEMEKKLADSLKEMEL-------LKEKLAGLELAQEEANSL 644 (717)
Q Consensus 605 ~~~~~~~~~~~~~~~~~~~~~~-------l~~~~~~~~~~~~~~~~~ 644 (717)
.++.-+.+++.||.+..|+.-+ ||.|||.+=..=-|.|.|
T Consensus 48 Ea~~L~~~L~~kl~eLqkk~~Ea~lAVtPLKak~AslV~kc~eRn~L 94 (277)
T PF15030_consen 48 EATRLQDELQGKLEELQKKQHEANLAVTPLKAKLASLVQKCRERNRL 94 (277)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhHhhccchHHHHHHHHHHHHHHHHHH
Confidence 3455566666666666655443 999998876665666764
No 365
>KOG4593 consensus Mitotic checkpoint protein MAD1 [Cell cycle control, cell division, chromosome partitioning]
Probab=49.84 E-value=87 Score=37.04 Aligned_cols=117 Identities=26% Similarity=0.267 Sum_probs=76.4
Q ss_pred HHHHHHHHHHHHHHHhcchhHHHHHHHhhHHHHHh-------hhhhHHhhHHHHHHHHHHHHHHHHHHHHHHhhhhhhhh
Q 005043 567 IYQFYESKMAALIRKNGILEGQLAAALVNREAAEK-------NFSSVLKSRQEMEKKLADSLKEMELLKEKLAGLELAQE 639 (717)
Q Consensus 567 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~-------~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 639 (717)
++..|..++.-|-+.|-.|+.|+.--+..=+=.|+ +..-.++.||..+.++.....|.+.||+.+.++|.-..
T Consensus 504 ~i~~~~ke~~~Le~En~rLr~~~e~~~l~gd~~~~~~rVl~~~~npt~~~~~~~k~~~e~LqaE~~~lk~~l~~le~~~~ 583 (716)
T KOG4593|consen 504 KIEQYLKELELLEEENDRLRAQLERRLLQGDYEENITRVLHMSTNPTSKARQIKKNRLEELQAELERLKERLTALEGDKM 583 (716)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhccceeeecCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCC
Confidence 34455566666666665555444333322222333 23334689999999999999999999999999997777
Q ss_pred hhcccccccccCCccchhhHHHHHHHHHHHHHHhhhhccchhhcc
Q 005043 640 EANSLSNIVHSDNVRLEHDVAFLKAVLDDTQKELHSTRGVLAGER 684 (717)
Q Consensus 640 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 684 (717)
+.-+.-=+|||==.- =-|||-||+=.....|-..--+.|.|.++
T Consensus 584 ~~~d~~i~~~s~~~~-~~ev~qlk~ev~s~ekr~~rlk~vF~~ki 627 (716)
T KOG4593|consen 584 QFRDGEIAVHSLLAF-SKEVAQLKKEVESAEKRNQRLKEVFASKI 627 (716)
T ss_pred cccchhhHHhhhhcc-hHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 766666666653211 34677777777777666666666666554
No 366
>PF12325 TMF_TATA_bd: TATA element modulatory factor 1 TATA binding; InterPro: IPR022091 This is the C-terminal conserved coiled coil region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes []. The proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMF1_TATA_bd is the most conserved part of the TMFs []. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant cells. The Rab6-binding domain appears to be the same region as this C-terminal family [].
Probab=49.75 E-value=73 Score=29.43 Aligned_cols=38 Identities=13% Similarity=0.114 Sum_probs=21.5
Q ss_pred HHHHHHHHHHHHHhcchhHHHHHHHhhHHHHHhhhhhH
Q 005043 569 QFYESKMAALIRKNGILEGQLAAALVNREAAEKNFSSV 606 (717)
Q Consensus 569 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~ 606 (717)
+.+..+++.+-+....|...+...+...|+++...+.+
T Consensus 33 ~~l~~el~~l~~~r~~l~~Eiv~l~~~~e~~~~~~~~~ 70 (120)
T PF12325_consen 33 ASLQEELARLEAERDELREEIVKLMEENEELRALKKEV 70 (120)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45555555555555566666666666666655444433
No 367
>PRK09174 F0F1 ATP synthase subunit B'; Validated
Probab=49.55 E-value=1.3e+02 Score=30.43 Aligned_cols=32 Identities=16% Similarity=0.267 Sum_probs=15.2
Q ss_pred HHhhhhhHHhhHHHHHHHHHHHHHHHHHHHHH
Q 005043 599 AEKNFSSVLKSRQEMEKKLADSLKEMELLKEK 630 (717)
Q Consensus 599 ~e~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 630 (717)
.++.|..+-+.+++.++.+++..++++.-|.+
T Consensus 89 I~~~L~~Ae~~k~eAe~~~~~ye~~L~~Ar~e 120 (204)
T PRK09174 89 IAQDLDQAARLKQEADAAVAAYEQELAQARAK 120 (204)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444555555555554444444433
No 368
>TIGR02680 conserved hypothetical protein TIGR02680. Members of this protein family belong to a conserved gene four-gene neighborhood found sporadically in a phylogenetically broad range of bacteria: Nocardia farcinica, Symbiobacterium thermophilum, and Streptomyces avermitilis (Actinobacteria), Geobacillus kaustophilus (Firmicutes), Azoarcus sp. EbN1 and Ralstonia solanacearum (Betaproteobacteria). Proteins in this family average over 1400 amino acids in length.
Probab=49.42 E-value=61 Score=42.29 Aligned_cols=24 Identities=29% Similarity=0.389 Sum_probs=10.1
Q ss_pred hhHHHHHHHHHHHHHHhhhhccch
Q 005043 657 HDVAFLKAVLDDTQKELHSTRGVL 680 (717)
Q Consensus 657 ~~~~~~~~~~~~~~~~~~~~~~~~ 680 (717)
+++.=+++-+++..+++..++..|
T Consensus 368 ~~~~~~~~r~~~~~~~l~~~~~el 391 (1353)
T TIGR02680 368 RRLDEEAGRLDDAERELRAAREQL 391 (1353)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333334444444444444444433
No 369
>PRK13461 F0F1 ATP synthase subunit B; Provisional
Probab=49.41 E-value=1.1e+02 Score=29.44 Aligned_cols=64 Identities=16% Similarity=0.183 Sum_probs=32.2
Q ss_pred HHHHHhcchhHHHHHHHhhHHHHHhhhhhHH----hhHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhc
Q 005043 577 ALIRKNGILEGQLAAALVNREAAEKNFSSVL----KSRQEMEKKLADSLKEMELLKEKLAGLELAQEEAN 642 (717)
Q Consensus 577 ~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~----~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 642 (717)
.+=.|.....++|+.|-..+++|++.+...- +.+++...-+.++.++.+..++++ ++.|++++.
T Consensus 33 ~l~~R~~~I~~~l~~A~~~~~eA~~~~~e~~~~l~~a~~ea~~ii~~a~~~a~~~~~~i--~~~A~~ea~ 100 (159)
T PRK13461 33 VIDSRQSEIDNKIEKADEDQKKARELKLKNERELKNAKEEGKKIVEEYKSKAENVYEEI--VKEAHEEAD 100 (159)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHH
Confidence 3445566667777777766666666554332 233333333444444444443332 344444443
No 370
>KOG1842 consensus FYVE finger-containing protein [General function prediction only]
Probab=49.41 E-value=62 Score=36.15 Aligned_cols=71 Identities=28% Similarity=0.272 Sum_probs=48.9
Q ss_pred HHHHHHHHHHHHHH-hcchhHHHHHHH------hhHH---------HHHhhhhhHHhhHHHHHHHHHHHHHHHHHHHHHH
Q 005043 568 YQFYESKMAALIRK-NGILEGQLAAAL------VNRE---------AAEKNFSSVLKSRQEMEKKLADSLKEMELLKEKL 631 (717)
Q Consensus 568 ~~~~~~~~~~~~~~-~~~~~~~~~~~~------~~~~---------~~e~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 631 (717)
++++.+||+.+.-. +.-+|.||--+. +-.| .+|.=-+...+-+.++|++.|.-.++.|.-+|++
T Consensus 328 ~D~~sKkI~~l~~~p~~~~E~qLkk~Irl~a~~~lqEkiL~L~sLPt~e~~~~l~~krk~~te~d~a~e~r~a~~~~~rl 407 (505)
T KOG1842|consen 328 IDGTSKKIANLPSSPPSDAEEQLKKNIRLEAKQYLQEKILRLQSLPTAEECYHLQVKRKEETESDFAREGREAEKKKERL 407 (505)
T ss_pred HHHHHHHHHhccCCCCChHHHHHHHHHHHHHHHHHHHHhccccCCCchHHHHHHHhhHhhhHHHHHHHHHHHHHHHHHhH
Confidence 46888999987766 677888875443 2222 2233334557788889999888888888888887
Q ss_pred hhhhhhh
Q 005043 632 AGLELAQ 638 (717)
Q Consensus 632 ~~~~~~~ 638 (717)
..++..+
T Consensus 408 ~q~q~q~ 414 (505)
T KOG1842|consen 408 SQLQKQQ 414 (505)
T ss_pred HHHHHhc
Confidence 6665444
No 371
>PF10234 Cluap1: Clusterin-associated protein-1; InterPro: IPR019366 This protein of 413 amino acids contains a central coiled-coil domain, possibly the region that binds to clusterin. Cluap1 expression is highest in the nucleus and gradually increases during late S to G2/M phases of the cell cycle and returns to the basal level in the G0/G1 phases. In addition, it is upregulated in colon cancer tissues compared to corresponding non-cancerous mucosa. It thus plays a crucial role in the life of the cell [].
Probab=49.26 E-value=97 Score=32.70 Aligned_cols=13 Identities=15% Similarity=0.524 Sum_probs=9.5
Q ss_pred HHHHHHHHHHHHH
Q 005043 659 VAFLKAVLDDTQK 671 (717)
Q Consensus 659 ~~~~~~~~~~~~~ 671 (717)
+.||+..||+..+
T Consensus 248 l~yLe~qle~~~~ 260 (267)
T PF10234_consen 248 LDYLEHQLEEYNR 260 (267)
T ss_pred HHHHHHHHHHHHH
Confidence 6788888777655
No 372
>PF05911 DUF869: Plant protein of unknown function (DUF869); InterPro: IPR008587 This family consists of a number of sequences found in plants. The function of this family is unknown.
Probab=49.24 E-value=68 Score=38.95 Aligned_cols=66 Identities=24% Similarity=0.294 Sum_probs=54.6
Q ss_pred HHHHHHHHHHhcchhHHHHHHHhhHHHHHhhhhhHHhhHHHHHHHHHHHHHHHHHHHHHHhhhhhh
Q 005043 572 ESKMAALIRKNGILEGQLAAALVNREAAEKNFSSVLKSRQEMEKKLADSLKEMELLKEKLAGLELA 637 (717)
Q Consensus 572 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 637 (717)
..++..+=.+-+-|+.||+.+-.++.++|-.|.-.-.+++.++-++.++..|.+.|..|+..+|..
T Consensus 623 ~~qL~E~E~~L~eLq~eL~~~keS~s~~E~ql~~~~e~~e~le~~~~~~e~E~~~l~~Ki~~Le~E 688 (769)
T PF05911_consen 623 KNQLKESEQKLEELQSELESAKESNSLAETQLKAMKESYESLETRLKDLEAEAEELQSKISSLEEE 688 (769)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHH
Confidence 334444445556788899999999999999999999999999999999999999999999988755
No 373
>PF05262 Borrelia_P83: Borrelia P83/100 protein; InterPro: IPR007926 This family consists of several Borrelia P83/P100 antigen proteins.
Probab=49.24 E-value=53 Score=37.68 Aligned_cols=17 Identities=24% Similarity=0.350 Sum_probs=10.8
Q ss_pred HHHHHHHHHHHhhhhcc
Q 005043 662 LKAVLDDTQKELHSTRG 678 (717)
Q Consensus 662 ~~~~~~~~~~~~~~~~~ 678 (717)
++.+-.|+||.+...++
T Consensus 330 r~~iAkD~qk~~~e~~~ 346 (489)
T PF05262_consen 330 RKEIAKDQQKLIEEQKA 346 (489)
T ss_pred HHHHHHHHHHHHhhhhh
Confidence 34555677777776655
No 374
>KOG1962 consensus B-cell receptor-associated protein and related proteins [Defense mechanisms]
Probab=49.11 E-value=46 Score=33.84 Aligned_cols=54 Identities=30% Similarity=0.256 Sum_probs=26.3
Q ss_pred HHHHhhHHHHHhhhhhHHhhHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhcc
Q 005043 590 AAALVNREAAEKNFSSVLKSRQEMEKKLADSLKEMELLKEKLAGLELAQEEANS 643 (717)
Q Consensus 590 ~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 643 (717)
..|....+++.+.+..--+--.++.+..|+..+-.++|++|-..+|.||++--.
T Consensus 130 ~~~~~~~~~lk~~~~~~~~~~~~~~~~~~~~~kL~~el~~~~~~Le~~~~~~~a 183 (216)
T KOG1962|consen 130 EKAMKENEALKKQLENSSKLEEENDKLKADLEKLETELEKKQKKLEKAQKKVDA 183 (216)
T ss_pred HHHHHHHHHHHHhhhcccchhhhHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333334455544444333323344444555555555556666666666654433
No 375
>KOG4001 consensus Axonemal dynein light chain [Cytoskeleton]
Probab=49.10 E-value=37 Score=33.80 Aligned_cols=17 Identities=35% Similarity=0.307 Sum_probs=11.7
Q ss_pred HHHHHHHHHHHHHhcch
Q 005043 569 QFYESKMAALIRKNGIL 585 (717)
Q Consensus 569 ~~~~~~~~~~~~~~~~~ 585 (717)
..|+.-+|.=+||.-..
T Consensus 167 tlyeSsvAfGmRKALqa 183 (259)
T KOG4001|consen 167 TLYESSVAFGMRKALQA 183 (259)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 47777777777775544
No 376
>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A ....
Probab=49.08 E-value=4.1e+02 Score=29.38 Aligned_cols=255 Identities=14% Similarity=0.068 Sum_probs=110.6
Q ss_pred CCEEEEEcccCCCCCcccEEEEEcCCCceEE-ccccccCCCCCCCCCCCcccceEEE-EECCEEEEEeccCCCCCCceEE
Q 005043 98 GNKMIVVGGESGNGLLDDVQVLNFDRFSWTA-ASSKLYLSPSSLPLKIPACRGHSLI-SWGKKVLLVGGKTDSGSDRVSV 175 (717)
Q Consensus 98 ~~~lyV~GG~~~~~~~~~v~~yd~~t~~W~~-l~~~~~~~~~~~~~~~p~r~~hs~v-~~~~~Iyv~GG~~~~~~~~~~v 175 (717)
+++.++.+.+.. +.+.++|..+.+=.. ++..... . .....| ..+++ ...+..|++--.. ...+
T Consensus 88 DG~~~~v~n~~~----~~v~v~D~~tle~v~~I~~~~~~-~----~~~~~R-v~aIv~s~~~~~fVv~lkd-----~~~I 152 (369)
T PF02239_consen 88 DGKYVYVANYEP----GTVSVIDAETLEPVKTIPTGGMP-V----DGPESR-VAAIVASPGRPEFVVNLKD-----TGEI 152 (369)
T ss_dssp TTTEEEEEEEET----TEEEEEETTT--EEEEEE--EE--T----TTS----EEEEEE-SSSSEEEEEETT-----TTEE
T ss_pred CCCEEEEEecCC----CceeEeccccccceeeccccccc-c----cccCCC-ceeEEecCCCCEEEEEEcc-----CCeE
Confidence 555444444332 368889988764332 2221000 0 001122 12222 2355556664432 3479
Q ss_pred EEEECCCCcEEEeeecCCCCCCceeeEEEEECCEEEEEccccCCCCCcCcEEEEEcCCCceEeccCCCCCCCCCcccEEE
Q 005043 176 WTFDTETECWSVVEAKGDIPVARSGHTVVRASSVLILFGGEDGKRRKLNDLHMFDLKSLTWLPLHCTGTGPSPRSNHVAA 255 (717)
Q Consensus 176 ~~yD~~t~~W~~l~~~g~~P~~R~~hs~~~~~~~Lyv~GG~~~~~~~~~~v~~yD~~t~~W~~l~~~g~~P~~R~~~aa~ 255 (717)
|..|.....=-... .+...++-|-.....+.=|++.+... .+.+-+.|.++++-..+-..|..|.+.....+.
T Consensus 153 ~vVdy~d~~~~~~~---~i~~g~~~~D~~~dpdgry~~va~~~----sn~i~viD~~~~k~v~~i~~g~~p~~~~~~~~p 225 (369)
T PF02239_consen 153 WVVDYSDPKNLKVT---TIKVGRFPHDGGFDPDGRYFLVAANG----SNKIAVIDTKTGKLVALIDTGKKPHPGPGANFP 225 (369)
T ss_dssp EEEETTTSSCEEEE---EEE--TTEEEEEE-TTSSEEEEEEGG----GTEEEEEETTTTEEEEEEE-SSSBEETTEEEEE
T ss_pred EEEEecccccccee---eecccccccccccCcccceeeecccc----cceeEEEeeccceEEEEeecccccccccccccc
Confidence 99987654211111 13445666666665443333334332 357889998887654432234444433333332
Q ss_pred EECCcEEEEEcCCCCCCCCCeEEEEEC----CCCcEEEeecCCCCCCCCcceEEEEE--CCEEEEEecCCCCCccCeEEE
Q 005043 256 LYDDKNLLIFGGSSKSKTLNDLYSLDF----ETMIWTRIKIRGFHPSPRAGCCGVLC--GTKWYIAGGGSRKKRHAETLI 329 (717)
Q Consensus 256 ~~~~~~lyV~GG~~~~~~~ndv~~yd~----~t~~W~~v~~~g~~P~~R~~~sav~~--~~~IyV~GG~~~~~~~~dv~~ 329 (717)
-.....++..+|..... -...--|+ ....|+.+... +..-.++.+..+ +..+|+-- ..+.....+.+
T Consensus 226 hp~~g~vw~~~~~~~~~--~~~ig~~~v~v~d~~~wkvv~~I---~~~G~glFi~thP~s~~vwvd~--~~~~~~~~v~v 298 (369)
T PF02239_consen 226 HPGFGPVWATSGLGYFA--IPLIGTDPVSVHDDYAWKVVKTI---PTQGGGLFIKTHPDSRYVWVDT--FLNPDADTVQV 298 (369)
T ss_dssp ETTTEEEEEEEBSSSSE--EEEEE--TTT-STTTBTSEEEEE---E-SSSS--EE--TT-SEEEEE---TT-SSHT-EEE
T ss_pred CCCcceEEeecccccee--cccccCCccccchhhcCeEEEEE---ECCCCcceeecCCCCccEEeec--cCCCCCceEEE
Confidence 22323344445432110 01122232 24668877654 222223333333 34555541 11112567999
Q ss_pred EECCCCcEEEeecCCCCCCCCCcc-eEEEEEEeCCCcEEEEEcCCCCCCCCeEEEEEccCCcc
Q 005043 330 FDILKGEWSVAITSPSSSVTSNKG-FTLVLVQHKEKDFLVAFGGIKKEPSNQVEVLSIEKNES 391 (717)
Q Consensus 330 yD~~t~~W~~l~~~p~~~~~~r~g-~s~v~v~~~~~~~I~v~GG~~~~~~n~v~vyd~~~~eW 391 (717)
+|..+.+ .+.... ...+ -.+..-..+++..+|+--...+. .+.+||..+.+.
T Consensus 299 iD~~tl~--~~~~i~-----~~~~~~~~h~ef~~dG~~v~vS~~~~~~---~i~v~D~~Tl~~ 351 (369)
T PF02239_consen 299 IDKKTLK--VVKTIT-----PGPGKRVVHMEFNPDGKEVWVSVWDGNG---AIVVYDAKTLKE 351 (369)
T ss_dssp EECCGTE--EEE-HH-----HHHT--EEEEEE-TTSSEEEEEEE--TT---EEEEEETTTTEE
T ss_pred EECcCcc--eeEEEe-----ccCCCcEeccEECCCCCEEEEEEecCCC---EEEEEECCCcEE
Confidence 9998873 322111 1111 02222223556777765554333 799999988874
No 377
>KOG0994 consensus Extracellular matrix glycoprotein Laminin subunit beta [Extracellular structures]
Probab=48.83 E-value=75 Score=39.60 Aligned_cols=24 Identities=46% Similarity=0.530 Sum_probs=13.7
Q ss_pred hccccceeeEEEeehh-------hhhhhhhc
Q 005043 682 GERARAFQLQVEVFHL-------KQRLQSLE 705 (717)
Q Consensus 682 ~~~~~~~~~~~~~~~~-------~~~~~~~~ 705 (717)
.-|.||=||+-|--.| -|||+-||
T Consensus 1686 ~ar~rAe~L~~eA~~Ll~~a~~kl~~l~dLe 1716 (1758)
T KOG0994|consen 1686 AARERAEQLRTEAEKLLGQANEKLDRLKDLE 1716 (1758)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3466777777554443 34555555
No 378
>KOG0161 consensus Myosin class II heavy chain [Cytoskeleton]
Probab=48.67 E-value=65 Score=42.92 Aligned_cols=62 Identities=31% Similarity=0.333 Sum_probs=39.2
Q ss_pred HHHHHHHhcchhHHHHHHHhhHHHHHhhhhhHHhhHHHHHHHHHHHHHHHHHHHHHHhhhhh
Q 005043 575 MAALIRKNGILEGQLAAALVNREAAEKNFSSVLKSRQEMEKKLADSLKEMELLKEKLAGLEL 636 (717)
Q Consensus 575 ~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 636 (717)
...+..+...|..||.+=.....+||..+......++++|++|.+..++++...|+.+.+|+
T Consensus 868 ~~~~~~e~~~l~~~l~~e~~~~~~aee~~~~~~~~k~~le~~l~~~~~~~e~~ee~~~~le~ 929 (1930)
T KOG0161|consen 868 LVKLLEEKNDLQEQLQAEKENLAEAEELLERLRAEKQELEKELKELKERLEEEEEKNAELER 929 (1930)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444455556666666666666677777777788877777777666666665555544
No 379
>PRK09173 F0F1 ATP synthase subunit B; Validated
Probab=48.58 E-value=75 Score=30.51 Aligned_cols=25 Identities=24% Similarity=0.284 Sum_probs=13.5
Q ss_pred HHhcchhHHHHHHHhhHHHHHhhhh
Q 005043 580 RKNGILEGQLAAALVNREAAEKNFS 604 (717)
Q Consensus 580 ~~~~~~~~~~~~~~~~~~~~e~~~~ 604 (717)
.|.....+.|..|-..+++|++.+.
T Consensus 33 ~R~~~I~~~l~~Ae~~~~eA~~~~~ 57 (159)
T PRK09173 33 ARADRIKNELAEARRLREEAQQLLA 57 (159)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444555556665555555555443
No 380
>KOG0971 consensus Microtubule-associated protein dynactin DCTN1/Glued [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=48.55 E-value=92 Score=37.86 Aligned_cols=34 Identities=24% Similarity=0.319 Sum_probs=24.6
Q ss_pred hhhhHHhhHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 005043 602 NFSSVLKSRQEMEKKLADSLKEMELLKEKLAGLE 635 (717)
Q Consensus 602 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 635 (717)
++--++=.++.+|++..-..-|+|.||||+..+|
T Consensus 312 ~iEmaTldKEmAEERaesLQ~eve~lkEr~dele 345 (1243)
T KOG0971|consen 312 AIEMATLDKEMAEERAESLQQEVEALKERVDELE 345 (1243)
T ss_pred HHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444566677777777777788888888887665
No 381
>PRK11448 hsdR type I restriction enzyme EcoKI subunit R; Provisional
Probab=48.51 E-value=58 Score=41.48 Aligned_cols=67 Identities=18% Similarity=0.185 Sum_probs=48.6
Q ss_pred HHHHHHHHHHHhcchhHHHHHHHhhHHHHHhhhhhHHhhHHHHHHHHHHHHHHHHHHHHHHhhhhhh
Q 005043 571 YESKMAALIRKNGILEGQLAAALVNREAAEKNFSSVLKSRQEMEKKLADSLKEMELLKEKLAGLELA 637 (717)
Q Consensus 571 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 637 (717)
...+++.|-++.+.+..+.+++.+..++.+++++..-+.+++++++.+...++++.|++..+....+
T Consensus 147 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 213 (1123)
T PRK11448 147 LQQEVLTLKQQLELQAREKAQSQALAEAQQQELVALEGLAAELEEKQQELEAQLEQLQEKAAETSQE 213 (1123)
T ss_pred hHHHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHH
Confidence 4455555544445555666666677777777777777788899999999999999998887776544
No 382
>KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning]
Probab=48.15 E-value=3.8e+02 Score=28.80 Aligned_cols=106 Identities=15% Similarity=0.243 Sum_probs=59.6
Q ss_pred EEEECCEEEEEcccCCCCCcccEEEEEcCCCceEEccccccCCCCCCCCCCCcccceEEEE-ECCEEEEEeccCCCCCCc
Q 005043 94 AAVIGNKMIVVGGESGNGLLDDVQVLNFDRFSWTAASSKLYLSPSSLPLKIPACRGHSLIS-WGKKVLLVGGKTDSGSDR 172 (717)
Q Consensus 94 av~~~~~lyV~GG~~~~~~~~~v~~yd~~t~~W~~l~~~~~~~~~~~~~~~p~r~~hs~v~-~~~~Iyv~GG~~~~~~~~ 172 (717)
+++.+..=.+.||.++ .+-+||+++..=..+... ..+.+ ++.. .....+|.||++.
T Consensus 60 c~F~d~~~~~~G~~dg-----~vr~~Dln~~~~~~igth----------~~~i~---ci~~~~~~~~vIsgsWD~----- 116 (323)
T KOG1036|consen 60 CAFADESTIVTGGLDG-----QVRRYDLNTGNEDQIGTH----------DEGIR---CIEYSYEVGCVISGSWDK----- 116 (323)
T ss_pred eeccCCceEEEeccCc-----eEEEEEecCCcceeeccC----------CCceE---EEEeeccCCeEEEcccCc-----
Confidence 3445566667777665 489999999877666552 12222 1111 3466778888853
Q ss_pred eEEEEEECCCCcEEEeeecCCCCCCceeeEEEEECCEEEEEccccCCCCCcCcEEEEEcCCCc
Q 005043 173 VSVWTFDTETECWSVVEAKGDIPVARSGHTVVRASSVLILFGGEDGKRRKLNDLHMFDLKSLT 235 (717)
Q Consensus 173 ~~v~~yD~~t~~W~~l~~~g~~P~~R~~hs~~~~~~~Lyv~GG~~~~~~~~~~v~~yD~~t~~ 235 (717)
.+..+|+....-. +..-.+..-+++.+.++.| |+|+.+ ..+.+||+.+..
T Consensus 117 -~ik~wD~R~~~~~-----~~~d~~kkVy~~~v~g~~L-vVg~~~------r~v~iyDLRn~~ 166 (323)
T KOG1036|consen 117 -TIKFWDPRNKVVV-----GTFDQGKKVYCMDVSGNRL-VVGTSD------RKVLIYDLRNLD 166 (323)
T ss_pred -cEEEEeccccccc-----cccccCceEEEEeccCCEE-EEeecC------ceEEEEEccccc
Confidence 5777788752111 1112222344555555554 555433 358889986553
No 383
>PRK07352 F0F1 ATP synthase subunit B; Validated
Probab=48.06 E-value=96 Score=30.30 Aligned_cols=31 Identities=13% Similarity=0.081 Sum_probs=20.6
Q ss_pred HHHHHHhcchhHHHHHHHhhHHHHHhhhhhH
Q 005043 576 AALIRKNGILEGQLAAALVNREAAEKNFSSV 606 (717)
Q Consensus 576 ~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~ 606 (717)
..+=.|....++.|+.|-..+++|++.+...
T Consensus 46 ~~l~~R~~~I~~~l~~A~~~~~ea~~~~~~~ 76 (174)
T PRK07352 46 KILEERREAILQALKEAEERLRQAAQALAEA 76 (174)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344556667777777777777777766655
No 384
>CHL00019 atpF ATP synthase CF0 B subunit
Probab=47.83 E-value=1.1e+02 Score=30.30 Aligned_cols=29 Identities=14% Similarity=0.161 Sum_probs=16.1
Q ss_pred HHHHhcchhHHHHHHHhhHHHHHhhhhhH
Q 005043 578 LIRKNGILEGQLAAALVNREAAEKNFSSV 606 (717)
Q Consensus 578 ~~~~~~~~~~~~~~~~~~~~~~e~~~~~~ 606 (717)
+-.|.....+.|..|-..+++|++.++..
T Consensus 53 l~~R~~~I~~~l~~Ae~~~~eA~~~~~e~ 81 (184)
T CHL00019 53 LDNRKQTILNTIRNSEERREEAIEKLEKA 81 (184)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33445555666666666666666555443
No 385
>TIGR02680 conserved hypothetical protein TIGR02680. Members of this protein family belong to a conserved gene four-gene neighborhood found sporadically in a phylogenetically broad range of bacteria: Nocardia farcinica, Symbiobacterium thermophilum, and Streptomyces avermitilis (Actinobacteria), Geobacillus kaustophilus (Firmicutes), Azoarcus sp. EbN1 and Ralstonia solanacearum (Betaproteobacteria). Proteins in this family average over 1400 amino acids in length.
Probab=47.81 E-value=55 Score=42.68 Aligned_cols=68 Identities=13% Similarity=0.213 Sum_probs=39.9
Q ss_pred HHHHHH-HHHHHHHHhcchhHHHHHHHhhHHHHHhhhhhHHhhHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 005043 568 YQFYES-KMAALIRKNGILEGQLAAALVNREAAEKNFSSVLKSRQEMEKKLADSLKEMELLKEKLAGLE 635 (717)
Q Consensus 568 ~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 635 (717)
|+.|.. .......+.-+...++.++.+..+.++..+..+-+.+.++++++..+.++++.|++++..++
T Consensus 256 y~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~~~~l~~~~~~l~ 324 (1353)
T TIGR02680 256 YRRYARTMLRRRATRLRSAQTQYDQLSRDLGRARDELETAREEERELDARTEALEREADALRTRLEALQ 324 (1353)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 555555 33334444445555666666666666666666666666666666666666666666665554
No 386
>TIGR01010 BexC_CtrB_KpsE polysaccharide export inner-membrane protein, BexC/CtrB/KpsE family. This family contains gamma proteobacterial proteins involved in capsule polysaccharide export.
Probab=47.60 E-value=49 Score=36.38 Aligned_cols=26 Identities=23% Similarity=0.225 Sum_probs=22.8
Q ss_pred CccchhhHHHHHHHHHHHHHHhhhhc
Q 005043 652 NVRLEHDVAFLKAVLDDTQKELHSTR 677 (717)
Q Consensus 652 ~~~~~~~~~~~~~~~~~~~~~~~~~~ 677 (717)
=-+|++|+.|-+++++...+.+..+|
T Consensus 280 ~~~L~re~~~a~~~y~~~l~r~~~a~ 305 (362)
T TIGR01010 280 YQRLVLQNELAQQQLKAALTSLQQTR 305 (362)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34899999999999999998888888
No 387
>PF14197 Cep57_CLD_2: Centrosome localisation domain of PPC89
Probab=47.59 E-value=1.3e+02 Score=24.96 Aligned_cols=53 Identities=23% Similarity=0.283 Sum_probs=38.7
Q ss_pred chhHHHHHHHhhHHHHHhhhhhHHhhHHHHHHHHHHHHHHHHHHHHHHhhhhh
Q 005043 584 ILEGQLAAALVNREAAEKNFSSVLKSRQEMEKKLADSLKEMELLKEKLAGLEL 636 (717)
Q Consensus 584 ~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 636 (717)
.|...|+-+..--+--+--+..+.+.|..+..+|.++-.+...||+++..+..
T Consensus 9 ~Lr~rLd~~~rk~~~~~~~~k~L~~ERd~~~~~l~~a~~e~~~Lk~E~e~L~~ 61 (69)
T PF14197_consen 9 TLRNRLDSLTRKNSVHEIENKRLRRERDSAERQLGDAYEENNKLKEENEALRK 61 (69)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455555555555555556667788999999999999999999998877653
No 388
>cd00890 Prefoldin Prefoldin is a hexameric molecular chaperone complex, found in both eukaryotes and archaea, that binds and stabilizes newly synthesized polypeptides allowing them to fold correctly. The complex contains two alpha and four beta subunits, the two subunits being evolutionarily related. In archaea, there is usually only one gene for each subunit while in eukaryotes there two or more paralogous genes encoding each subunit adding heterogeneity to the structure of the hexamer. The structure of the complex consists of a double beta barrel assembly with six protruding coiled-coils.
Probab=47.50 E-value=1.3e+02 Score=27.37 Aligned_cols=35 Identities=26% Similarity=0.227 Sum_probs=24.4
Q ss_pred HHHHHHHHHHHHHHHhcchhHHHHHHHhhHHHHHh
Q 005043 567 IYQFYESKMAALIRKNGILEGQLAAALVNREAAEK 601 (717)
Q Consensus 567 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~ 601 (717)
.++.|+.++..+-+....|..+++.-...++..+.
T Consensus 7 ~~~~l~~~i~~l~~~~~~l~~~~~e~~~~~~~l~~ 41 (129)
T cd00890 7 QLQQLQQQLEALQQQLQKLEAQLTEYEKAKETLET 41 (129)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45677777877777777777777766666655544
No 389
>PF10211 Ax_dynein_light: Axonemal dynein light chain; InterPro: IPR019347 Axonemal dynein light chain proteins play a dynamic role in flagellar and cilial motility. Eukaryotic cilia and flagella are complex organelles consisting of a core structure, the axoneme, which is composed of nine microtubule doublets forming a cylinder that surrounds a pair of central singlet microtubules. This ultra-structural arrangement seems to be one of the most stable micro-tubular assemblies known and is responsible for the flagellar and ciliary movement of a large number of organisms ranging from protozoan to mammals. This light chain interacts directly with the N-terminal half of the heavy chains [].
Probab=47.31 E-value=94 Score=31.01 Aligned_cols=28 Identities=25% Similarity=0.202 Sum_probs=10.5
Q ss_pred HHHHHHHHhcchhHHHHHHHhhHHHHHh
Q 005043 574 KMAALIRKNGILEGQLAAALVNREAAEK 601 (717)
Q Consensus 574 ~~~~~~~~~~~~~~~~~~~~~~~~~~e~ 601 (717)
+|+.|-.+...|+.+++...+..|++||
T Consensus 128 ~i~~L~~e~~~L~~~~~~l~~~~e~~ek 155 (189)
T PF10211_consen 128 EIEELEEEKEELEKQVQELKNKCEQLEK 155 (189)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333333333333333333333333
No 390
>PF04156 IncA: IncA protein; InterPro: IPR007285 Chlamydia trachomatis is an obligate intracellular bacterium that develops within a parasitophorous vacuole termed an inclusion. The inclusion is nonfusogenic with lysosomes but intercepts lipids from a host cell exocytic pathway. Initiation of chlamydial development is concurrent with modification of the inclusion membrane by a set of C. trachomatis-encoded proteins collectively designated Incs. One of these Incs, IncA (Inclusion membrane protein A), is functionally associated with the homotypic fusion of inclusions [].
Probab=47.31 E-value=1.2e+02 Score=29.84 Aligned_cols=59 Identities=12% Similarity=0.187 Sum_probs=34.0
Q ss_pred HHHHHhcchhHHHHHHHhhHHHHHhhhhhHHhhHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 005043 577 ALIRKNGILEGQLAAALVNREAAEKNFSSVLKSRQEMEKKLADSLKEMELLKEKLAGLE 635 (717)
Q Consensus 577 ~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 635 (717)
.+-++...++..+.+.....+..++......+.++..+.++....++.+.+.+.+..+.
T Consensus 92 ~l~~el~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~e~~~l~ 150 (191)
T PF04156_consen 92 QLQEELDQLQERIQELESELEKLKEDLQELRELLKSVEERLDSLDESIKELEKEIRELQ 150 (191)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444455555555555555555555556666666677666666666666666665
No 391
>TIGR01005 eps_transp_fam exopolysaccharide transport protein family. The model describes the exopolysaccharide transport protein family in bacteria. The transport protein is part of a large genetic locus which is associated with exopolysaccharide (EPS) biosynthesis. Detailed molecular characterization and gene fusion analysis revealed atleast seven gene products are involved in the overall regulation, which among other things, include exopolysaccharide biosynthesis, property of conferring virulence and exopolysaccharide export.
Probab=47.14 E-value=40 Score=40.98 Aligned_cols=19 Identities=21% Similarity=0.200 Sum_probs=8.0
Q ss_pred cchhHHHHHHHhhHHHHHh
Q 005043 583 GILEGQLAAALVNREAAEK 601 (717)
Q Consensus 583 ~~~~~~~~~~~~~~~~~e~ 601 (717)
.-|++||...-...+++|+
T Consensus 197 ~~L~~ql~~l~~~l~~aE~ 215 (754)
T TIGR01005 197 DFLAPEIADLSKQSRDAEA 215 (754)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444443
No 392
>PRK13453 F0F1 ATP synthase subunit B; Provisional
Probab=47.00 E-value=1.8e+02 Score=28.43 Aligned_cols=30 Identities=10% Similarity=0.029 Sum_probs=19.1
Q ss_pred HHHHHhcchhHHHHHHHhhHHHHHhhhhhH
Q 005043 577 ALIRKNGILEGQLAAALVNREAAEKNFSSV 606 (717)
Q Consensus 577 ~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~ 606 (717)
.+=.|......+|..|-..+++|++.++..
T Consensus 46 ~l~~R~~~I~~~l~~Ae~~~~eA~~~~~e~ 75 (173)
T PRK13453 46 VMDKRERDINRDIDDAEQAKLNAQKLEEEN 75 (173)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344566667777777777777776655443
No 393
>TIGR02231 conserved hypothetical protein. This family consists of proteins over 500 amino acids long in Caenorhabditis elegans and several bacteria (Pseudomonas aeruginosa, Nostoc sp. PCC 7120, Leptospira interrogans, etc.). The function is unknown.
Probab=46.83 E-value=1.4e+02 Score=34.80 Aligned_cols=26 Identities=15% Similarity=-0.089 Sum_probs=10.9
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhhhh
Q 005043 613 MEKKLADSLKEMELLKEKLAGLELAQ 638 (717)
Q Consensus 613 ~~~~~~~~~~~~~~l~~~~~~~~~~~ 638 (717)
+.+-++-..++++.|...+..++.++
T Consensus 129 ~~~~~~~~~~~~~~~~~~~~~~~~~~ 154 (525)
T TIGR02231 129 WFQAFDFNGSEIERLLTEDREAERRI 154 (525)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333334444444444444444333
No 394
>KOG0289 consensus mRNA splicing factor [General function prediction only]
Probab=46.25 E-value=4.8e+02 Score=29.42 Aligned_cols=121 Identities=11% Similarity=0.155 Sum_probs=62.7
Q ss_pred ceeeEEEEEC-CEEEEEccccCCCCCcCcEEEEEcCCCceEeccCCCCCCCCCccc-EEEEECCcEEEEEcCCCCCCCCC
Q 005043 198 RSGHTVVRAS-SVLILFGGEDGKRRKLNDLHMFDLKSLTWLPLHCTGTGPSPRSNH-VAALYDDKNLLIFGGSSKSKTLN 275 (717)
Q Consensus 198 R~~hs~~~~~-~~Lyv~GG~~~~~~~~~~v~~yD~~t~~W~~l~~~g~~P~~R~~~-aa~~~~~~~lyV~GG~~~~~~~n 275 (717)
...++++++. +-|+..|-.+ ..+-+||+++.. .+. ..|.--.-- +...-++++ |+.=+.+..
T Consensus 348 v~~ts~~fHpDgLifgtgt~d------~~vkiwdlks~~--~~a---~Fpght~~vk~i~FsENGY-~Lat~add~---- 411 (506)
T KOG0289|consen 348 VEYTSAAFHPDGLIFGTGTPD------GVVKIWDLKSQT--NVA---KFPGHTGPVKAISFSENGY-WLATAADDG---- 411 (506)
T ss_pred ceeEEeeEcCCceEEeccCCC------ceEEEEEcCCcc--ccc---cCCCCCCceeEEEeccCce-EEEEEecCC----
Confidence 3455666664 4455444322 347788998776 333 333311111 223335564 443333321
Q ss_pred eEEEEECCCCc-EEEeecCCCCCCCCcceEEEEE--CCEEEEEecCCCCCccCeEEEEECCCCcEEEeecCC
Q 005043 276 DLYSLDFETMI-WTRIKIRGFHPSPRAGCCGVLC--GTKWYIAGGGSRKKRHAETLIFDILKGEWSVAITSP 344 (717)
Q Consensus 276 dv~~yd~~t~~-W~~v~~~g~~P~~R~~~sav~~--~~~IyV~GG~~~~~~~~dv~~yD~~t~~W~~l~~~p 344 (717)
.|..||+.... ...+.. +... ......+ .|+.++++|.+ -.||.|+-.+..|+.+...+
T Consensus 412 ~V~lwDLRKl~n~kt~~l----~~~~-~v~s~~fD~SGt~L~~~g~~-----l~Vy~~~k~~k~W~~~~~~~ 473 (506)
T KOG0289|consen 412 SVKLWDLRKLKNFKTIQL----DEKK-EVNSLSFDQSGTYLGIAGSD-----LQVYICKKKTKSWTEIKELA 473 (506)
T ss_pred eEEEEEehhhcccceeec----cccc-cceeEEEcCCCCeEEeecce-----eEEEEEecccccceeeehhh
Confidence 38899986543 222221 1111 2222333 47777777743 23777788899999987543
No 395
>PRK06231 F0F1 ATP synthase subunit B; Validated
Probab=46.15 E-value=2.1e+02 Score=28.94 Aligned_cols=64 Identities=17% Similarity=0.201 Sum_probs=32.0
Q ss_pred HHHHhcchhHHHHHHHhhHHHHHhhhhhH----HhhHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhcc
Q 005043 578 LIRKNGILEGQLAAALVNREAAEKNFSSV----LKSRQEMEKKLADSLKEMELLKEKLAGLELAQEEANS 643 (717)
Q Consensus 578 ~~~~~~~~~~~~~~~~~~~~~~e~~~~~~----~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 643 (717)
+=.|....++.|..|-..+++|++.+... -+.|++...-+.++.++.+.+++.+ .+.|++++..
T Consensus 77 L~~R~~~I~~~L~~Ae~~~~eA~~~l~e~e~~L~~A~~eA~~Ii~~A~~eAe~~~e~i--~~~A~~eae~ 144 (205)
T PRK06231 77 LNKRKELIEAEINQANELKQQAQQLLENAKQRHENALAQAKEIIDQANYEALQLKSEL--EKEANRQANL 144 (205)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHH
Confidence 34455566666666666666666655443 2333444444444444444444333 3355555543
No 396
>PF09744 Jnk-SapK_ap_N: JNK_SAPK-associated protein-1; InterPro: IPR019143 This entry represents the N-terminal 200 residues of a set of proteins conserved from yeasts to humans. Most of the proteins in this entry have a RhoGEF domain (IPR000219 from INTERPRO) at their C-terminal end.
Probab=45.96 E-value=1e+02 Score=29.86 Aligned_cols=63 Identities=24% Similarity=0.246 Sum_probs=43.5
Q ss_pred HHHHHHHHHHHHHhcchhHHHHHHHhhHHHHHhhhhhH----HhhHHHHHHHHHHHHHHHHHHHHHH
Q 005043 569 QFYESKMAALIRKNGILEGQLAAALVNREAAEKNFSSV----LKSRQEMEKKLADSLKEMELLKEKL 631 (717)
Q Consensus 569 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~----~~~~~~~~~~~~~~~~~~~~l~~~~ 631 (717)
+.++.++..|...++.|+.|...--+.+.++|+++-.+ -..++.+..+++....+...|..|+
T Consensus 46 ~~~~~e~~~L~~d~e~L~~q~~~ek~~r~~~e~~l~~~Ed~~~~e~k~L~~~v~~Le~e~r~L~~~~ 112 (158)
T PF09744_consen 46 QEHEVELELLREDNEQLETQYEREKELRKQAEEELLELEDQWRQERKDLQSQVEQLEEENRQLELKL 112 (158)
T ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 46777788888889999999888888888888877633 3445555555555555555555443
No 397
>KOG4797 consensus Transcriptional regulator [Transcription]
Probab=45.94 E-value=22 Score=31.72 Aligned_cols=32 Identities=44% Similarity=0.600 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHhhhhhhhhhhcccccccccCCccchhhHHHHHH
Q 005043 619 DSLKEMELLKEKLAGLELAQEEANSLSNIVHSDNVRLEHDVAFLKA 664 (717)
Q Consensus 619 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 664 (717)
...+|+|-|||+|..+| +.|+ +||.|...||.
T Consensus 64 AVREEVe~Lk~qI~eL~----er~~----------~Le~EN~lLk~ 95 (123)
T KOG4797|consen 64 AVREEVEVLKEQIRELE----ERNS----------ALERENSLLKT 95 (123)
T ss_pred HHHHHHHHHHHHHHHHH----HHHH----------HHHHHHHHHHh
No 398
>PF07106 TBPIP: Tat binding protein 1(TBP-1)-interacting protein (TBPIP); InterPro: IPR010776 This family consists of several eukaryotic TBP-1 interacting protein (TBPIP) sequences. TBP-1 has been demonstrated to interact with the human immunodeficiency virus type 1 (HIV-1) viral protein Tat, then modulate the essential replication process of HIV. In addition, TBP-1 has been shown to be a component of the 26S proteasome, a basic multiprotein complex that degrades ubiquitinated proteins in an ATP-dependent fashion. Human TBPIP interacts with human TBP-1 then modulates the inhibitory action of human TBP-1 on HIV-Tat-mediated transactivation [].
Probab=45.87 E-value=67 Score=31.25 Aligned_cols=86 Identities=16% Similarity=0.199 Sum_probs=48.3
Q ss_pred HHHHHHHHHHHHhcchhHHHHHHHhhHHHHHhhhhhHHhhHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhcccccccc
Q 005043 570 FYESKMAALIRKNGILEGQLAAALVNREAAEKNFSSVLKSRQEMEKKLADSLKEMELLKEKLAGLELAQEEANSLSNIVH 649 (717)
Q Consensus 570 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 649 (717)
.+..+|..|-.+...|+.+.....+..-.+.+.+ +-.+|..+++...+|.+.|.+||..+.... ..
T Consensus 76 ~ld~ei~~L~~el~~l~~~~k~l~~eL~~L~~~~-----t~~el~~~i~~l~~e~~~l~~kL~~l~~~~---~~------ 141 (169)
T PF07106_consen 76 ELDAEIKELREELAELKKEVKSLEAELASLSSEP-----TNEELREEIEELEEEIEELEEKLEKLRSGS---KP------ 141 (169)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC-----CHHHHHHHHHHHHHHHHHHHHHHHHHHhCC---CC------
Confidence 3444455554444444444443333333333222 346788899999999999999999887311 11
Q ss_pred cCCccchhhHHHHHHHHHHHHHHh
Q 005043 650 SDNVRLEHDVAFLKAVLDDTQKEL 673 (717)
Q Consensus 650 ~~~~~~~~~~~~~~~~~~~~~~~~ 673 (717)
+. +.|+.-++.-....+|+.
T Consensus 142 ---vs-~ee~~~~~~~~~~~~k~w 161 (169)
T PF07106_consen 142 ---VS-PEEKEKLEKEYKKWRKEW 161 (169)
T ss_pred ---CC-HHHHHHHHHHHHHHHHHH
Confidence 11 355555555555555543
No 399
>TIGR01005 eps_transp_fam exopolysaccharide transport protein family. The model describes the exopolysaccharide transport protein family in bacteria. The transport protein is part of a large genetic locus which is associated with exopolysaccharide (EPS) biosynthesis. Detailed molecular characterization and gene fusion analysis revealed atleast seven gene products are involved in the overall regulation, which among other things, include exopolysaccharide biosynthesis, property of conferring virulence and exopolysaccharide export.
Probab=45.82 E-value=1.3e+02 Score=36.74 Aligned_cols=26 Identities=12% Similarity=0.165 Sum_probs=21.5
Q ss_pred cchhhHHHHHHHHHHHHHHhhhhccc
Q 005043 654 RLEHDVAFLKAVLDDTQKELHSTRGV 679 (717)
Q Consensus 654 ~~~~~~~~~~~~~~~~~~~~~~~~~~ 679 (717)
+|++|+...+.+.+....-+..+|-.
T Consensus 380 ~L~Re~~~~~~~Y~~ll~r~~e~~~~ 405 (754)
T TIGR01005 380 ALQRDAAAKRQLYESYLTNYRQAASR 405 (754)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 68999999999999988877776633
No 400
>PRK03598 putative efflux pump membrane fusion protein; Provisional
Probab=45.48 E-value=78 Score=34.20 Aligned_cols=23 Identities=22% Similarity=0.284 Sum_probs=14.9
Q ss_pred cchhhHHHHHHHHHHHHHHhhhh
Q 005043 654 RLEHDVAFLKAVLDDTQKELHST 676 (717)
Q Consensus 654 ~~~~~~~~~~~~~~~~~~~~~~~ 676 (717)
.++.+++-+++-++..+..|..+
T Consensus 182 ~~~~~l~~~~~~l~~a~~~l~~~ 204 (331)
T PRK03598 182 QAKASLAQAQAALAQAELNLQDT 204 (331)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcC
Confidence 34566777777777777777543
No 401
>PRK07353 F0F1 ATP synthase subunit B'; Validated
Probab=45.35 E-value=1.3e+02 Score=28.09 Aligned_cols=45 Identities=20% Similarity=0.259 Sum_probs=21.7
Q ss_pred chhHHHHHHHhhHHHHHhhhhhHHhhHHHHHHHHHHHHHHHHHHH
Q 005043 584 ILEGQLAAALVNREAAEKNFSSVLKSRQEMEKKLADSLKEMELLK 628 (717)
Q Consensus 584 ~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 628 (717)
.|+..=+......+.||+....+-+...+.+++|+++.+|...++
T Consensus 33 ~l~~R~~~I~~~l~~Ae~~~~ea~~~~~~~e~~L~~a~~ea~~i~ 77 (140)
T PRK07353 33 VVEEREDYIRTNRAEAKERLAEAEKLEAQYEQQLASARKQAQAVI 77 (140)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444445555555555555555555555554444433
No 402
>PF05557 MAD: Mitotic checkpoint protein; InterPro: IPR008672 This family consists of several eukaryotic mitotic checkpoint (Mitotic arrest deficient or MAD) proteins. The mitotic spindle checkpoint monitors proper attachment of the bipolar spindle to the kinetochores of aligned sister chromatids and causes a cell cycle arrest in prometaphase when failures occur. Multiple components of the mitotic spindle checkpoint have been identified in Saccharomyces cerevisiae and higher eukaryotes. In Saccharomyces cerevisiae, the existence of a Mad1-dependent complex containing Mad2, Mad3, Bub3 and Cdc20 has been demonstrated [].; PDB: 1GO4_F 4DZO_A.
Probab=45.26 E-value=1.5e+02 Score=36.09 Aligned_cols=108 Identities=21% Similarity=0.189 Sum_probs=64.4
Q ss_pred HHHHHHHHHHHhcchhHHHHHHHhhHHHHHhhhhh---------------------HHhhHHHHHHHHHHHHHHHHHHHH
Q 005043 571 YESKMAALIRKNGILEGQLAAALVNREAAEKNFSS---------------------VLKSRQEMEKKLADSLKEMELLKE 629 (717)
Q Consensus 571 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~---------------------~~~~~~~~~~~~~~~~~~~~~l~~ 629 (717)
+..++..|-+++..|+..++.....++.+|..|.. +.+-.+.-...|...-+|-+.|++
T Consensus 501 ~~e~~~~L~~~~~~Le~e~~~L~~~~~~Le~~l~~~~L~g~~~~~~trVL~lr~NP~~~~~~~k~~~l~~L~~En~~L~~ 580 (722)
T PF05557_consen 501 LSEELNELQKEIEELERENERLRQELEELESELEKLTLQGEFNPSKTRVLHLRDNPTSKAEQIKKSTLEALQAENEDLLA 580 (722)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCT--BTTTEEEEEESS-HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccCCCCceeeeeCCCcHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455556666666776666666666666654443 122334445677788888889999
Q ss_pred HHhhhhhhhhhhcccccccccCCccchhhHHHHHHHHHHHHHHhhhhccch
Q 005043 630 KLAGLELAQEEANSLSNIVHSDNVRLEHDVAFLKAVLDDTQKELHSTRGVL 680 (717)
Q Consensus 630 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 680 (717)
+|..+|...... ..-++-++=...+.|++=|++-++...|-..--+.|.
T Consensus 581 ~l~~le~~~~~~--~~~~p~~~~~~~~~e~~~l~~~~~~~ekr~~RLkevf 629 (722)
T PF05557_consen 581 RLRSLEEGNSQP--VDAVPTSSLESQEKEIAELKAELASAEKRNQRLKEVF 629 (722)
T ss_dssp HHHHHTTTT------------------HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhcccCCCCC--cccccchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 997776543322 2222334445778999999999999999887777665
No 403
>KOG0612 consensus Rho-associated, coiled-coil containing protein kinase [Signal transduction mechanisms]
Probab=45.10 E-value=1.2e+02 Score=38.15 Aligned_cols=92 Identities=18% Similarity=0.184 Sum_probs=60.8
Q ss_pred HHHHHHHhhHHHHHhhhhhHHhhHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhcccccccc--cCCccch-hhHHHHH
Q 005043 587 GQLAAALVNREAAEKNFSSVLKSRQEMEKKLADSLKEMELLKEKLAGLELAQEEANSLSNIVH--SDNVRLE-HDVAFLK 663 (717)
Q Consensus 587 ~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~-~~~~~~~ 663 (717)
.|.+.++.+--.++.+++..-+-++.++..+.+..+|+|.++++.+.+-..-++++++--.+- -+-.+-| .|+.=|+
T Consensus 487 ~q~~l~q~~~ke~~ek~~~~~~~~~~l~~~~~~~~eele~~q~~~~~~~~~~~kv~~~rk~le~~~~d~~~e~~~~~kl~ 566 (1317)
T KOG0612|consen 487 EQKALLQHEQKEVEEKLSEEEAKKRKLEALVRQLEEELEDAQKKNDNAADSLEKVNSLRKQLEEAELDMRAESEDAGKLR 566 (1317)
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHhhhhhhhhHHHHhhHh
Confidence 345555555556666788888889999999999999999999998888777777777543322 1222222 2244555
Q ss_pred HHHHHHHHHhhhhcc
Q 005043 664 AVLDDTQKELHSTRG 678 (717)
Q Consensus 664 ~~~~~~~~~~~~~~~ 678 (717)
-...|..|.|++-+.
T Consensus 567 ~~~~e~~~~iq~~~e 581 (1317)
T KOG0612|consen 567 KHSKELSKQIQQELE 581 (1317)
T ss_pred hhhhhhhHHHHHHhh
Confidence 555566666666554
No 404
>PF04012 PspA_IM30: PspA/IM30 family; InterPro: IPR007157 This family includes PspA a protein that suppresses sigma54-dependent transcription. The PspA protein, a negative regulator of the Escherichia coli phage shock psp operon, is produced when virulence factors are exported through secretins in many Gram-negative pathogenic bacteria and its homologue in plants, VIPP1, plays a critical role in thylakoid biogenesis, essential for photosynthesis. Activation of transcription by the enhancer-dependent bacterial sigma54-containing RNA polymerase occurs through ATP hydrolysis-driven protein conformational changes enabled by activator proteins that belong to the large AAA(+) mechanochemical protein family. It has been shown that PspA directly and specifically acts upon and binds to the AAA(+) domain of the PspF transcription activator [].
Probab=45.00 E-value=1.1e+02 Score=31.04 Aligned_cols=65 Identities=23% Similarity=0.250 Sum_probs=39.1
Q ss_pred HHHHhcchhHHHHHHHhhHHHHHhhhhhHHhhHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhcc
Q 005043 578 LIRKNGILEGQLAAALVNREAAEKNFSSVLKSRQEMEKKLADSLKEMELLKEKLAGLELAQEEANS 643 (717)
Q Consensus 578 ~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 643 (717)
++.+...++.+++...+..++++..+..+-.+.++|+.|+.+...+.++|+-+...++ ||+..|.
T Consensus 89 al~~k~~~e~~~~~l~~~~~~~~~~~~~l~~~l~~l~~kl~e~k~k~~~l~ar~~~a~-a~~~~~~ 153 (221)
T PF04012_consen 89 ALQRKADLEEQAERLEQQLDQAEAQVEKLKEQLEELEAKLEELKSKREELKARENAAK-AQKKVNE 153 (221)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHH
Confidence 4445555566666666666666666666666666777777777777666666655433 4444333
No 405
>KOG3856 consensus Uncharacterized conserved protein [Function unknown]
Probab=44.79 E-value=27 Score=32.02 Aligned_cols=32 Identities=38% Similarity=0.457 Sum_probs=28.9
Q ss_pred HHhhHHHHHHHHHHHHHHHHHHHHHHhhhhhh
Q 005043 606 VLKSRQEMEKKLADSLKEMELLKEKLAGLELA 637 (717)
Q Consensus 606 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 637 (717)
.+++...+++.|++.++...+|.|.|+.||+.
T Consensus 8 ~~~~ye~~kaEL~elikkrqe~eetl~nLe~q 39 (135)
T KOG3856|consen 8 ELKSYEDTKAELAELIKKRQELEETLANLERQ 39 (135)
T ss_pred cccchHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 36788999999999999999999999999864
No 406
>PF02994 Transposase_22: L1 transposable element; InterPro: IPR004244 Many human L1 elements are capable of retrotransposition. Some of these have been shown to exhibit reverse transcriptase (RT) activity [] although the function of many are, as yet, unknown. More information about these proteins can be found at Protein of the Month: Transposase [].; PDB: 2LDY_A 3SOO_A 2YKQ_A 2YKO_C 2YKP_B 2W7A_B 2JRB_A.
Probab=44.74 E-value=65 Score=35.75 Aligned_cols=67 Identities=24% Similarity=0.411 Sum_probs=44.7
Q ss_pred hhHHHHHhhhhhHHhhHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhcccccccccCCccc----hh-h------HHHH
Q 005043 594 VNREAAEKNFSSVLKSRQEMEKKLADSLKEMELLKEKLAGLELAQEEANSLSNIVHSDNVRL----EH-D------VAFL 662 (717)
Q Consensus 594 ~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~-~------~~~~ 662 (717)
...+++|.+++.+-+.-++++..+.+..+++..|+++|..+| |-..-.|+|+ |- | ++||
T Consensus 144 ~Ri~e~Eeris~lEd~~~~i~~~~~~~~k~i~~l~~kl~DlE----------nrsRRnNiRIiGiPEg~e~~~k~~~~~l 213 (370)
T PF02994_consen 144 SRIDELEERISELEDRIEEIEQAIKELEKRIKKLEDKLDDLE----------NRSRRNNIRIIGIPEGEEEEGKGPENFL 213 (370)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------HHHTTTEEEEES----TT--HHHHHHHH
T ss_pred HHHHHHHhHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHH----------hhccCCceeEEecCCCccccccCHHHHH
Confidence 345666777777766677777777777777777777777766 3356667776 32 1 5888
Q ss_pred HHHHHHHH
Q 005043 663 KAVLDDTQ 670 (717)
Q Consensus 663 ~~~~~~~~ 670 (717)
+-+|.+.-
T Consensus 214 ~~ii~e~~ 221 (370)
T PF02994_consen 214 EEIIPENF 221 (370)
T ss_dssp HHHHHHH-
T ss_pred HHHHHHhC
Confidence 88888753
No 407
>PRK14474 F0F1 ATP synthase subunit B; Provisional
Probab=44.70 E-value=61 Score=33.88 Aligned_cols=68 Identities=15% Similarity=0.144 Sum_probs=31.5
Q ss_pred HHHHHHHHHHHHHHhcchhHHHHHHHhhHHHHHhhhhhHHhhHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhcc
Q 005043 568 YQFYESKMAALIRKNGILEGQLAAALVNREAAEKNFSSVLKSRQEMEKKLADSLKEMELLKEKLAGLELAQEEANS 643 (717)
Q Consensus 568 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 643 (717)
..-++.+|+.-+..-+. ....|...++++|+.++.+ +++...-++++.+|.+..|+++ ++.|++|+..
T Consensus 34 l~eR~~~I~~~l~~Ae~---~~~eA~~~~~e~e~~l~~a---~~ea~~ii~~A~~eA~~~~~~i--l~~A~~ea~~ 101 (250)
T PRK14474 34 MKKRQQRIANRWQDAEQ---RQQEAGQEAERYRQKQQSL---EQQRASFMAQAQEAADEQRQHL--LNEAREDVAT 101 (250)
T ss_pred HHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHH
Confidence 44555666655554433 3344555566666665533 2333333444444444333332 3344444443
No 408
>smart00742 Hr1 Rho effector or protein kinase C-related kinase homology region 1 homologues. Alpha-helical domain found in vertebrate PRK1 and yeast PKC1 protein kinases C. The HR1 in rhophilin bind RhoGTP; those in PRK1 bind RhoA and RhoB. Also called RBD - Rho-binding domain
Probab=44.62 E-value=91 Score=24.54 Aligned_cols=49 Identities=29% Similarity=0.306 Sum_probs=35.7
Q ss_pred chhHHHHHHHhhHHHHHhhhhhHH---hhHHHHHHHHHHHHHHHHHHHHHHh
Q 005043 584 ILEGQLAAALVNREAAEKNFSSVL---KSRQEMEKKLADSLKEMELLKEKLA 632 (717)
Q Consensus 584 ~~~~~~~~~~~~~~~~e~~~~~~~---~~~~~~~~~~~~~~~~~~~l~~~~~ 632 (717)
.|+.+|.--++-++.||+=+.... +++++++.+|.++.+-+++|++.|.
T Consensus 5 ~L~~ki~~E~~i~~Gae~m~~~~~~~~k~~~~a~~~l~es~~ki~~L~~~L~ 56 (57)
T smart00742 5 DLRRKIEKELKVKEGAENMRKLTSNDRKVLSEAQSMLRESNQKLDLLKEELE 56 (57)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 345556666666777777443322 5788999999999999999998875
No 409
>PF09340 NuA4: Histone acetyltransferase subunit NuA4; InterPro: IPR015418 The NuA4 histone acetyltransferase (HAT) multisubunit complex is responsible for acetylation of histone H4 and H2A N-terminal tails in yeast []. NuA4 complexes are highly conserved in eukaryotes and play primary roles in transcription, cellular response to DNA damage, and cell cycle control [].
Probab=44.60 E-value=48 Score=28.28 Aligned_cols=42 Identities=21% Similarity=0.366 Sum_probs=23.2
Q ss_pred hhhhHHhhHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhcccccccc
Q 005043 602 NFSSVLKSRQEMEKKLADSLKEMELLKEKLAGLELAQEEANSLSNIVH 649 (717)
Q Consensus 602 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 649 (717)
.|...++-|+++|++|+.+.+++-.+....= |++....|||.
T Consensus 3 ~L~~l~~~k~~Le~~L~~lE~qIy~~Et~YL------~~~~~~GNiik 44 (80)
T PF09340_consen 3 ELKELLQKKKKLEKDLAALEKQIYDKETSYL------EDTSPYGNIIK 44 (80)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HccCcCCCCee
Confidence 4455556666666666555554433332221 25677888885
No 410
>PRK00409 recombination and DNA strand exchange inhibitor protein; Reviewed
Probab=44.58 E-value=78 Score=38.78 Aligned_cols=38 Identities=24% Similarity=0.157 Sum_probs=16.4
Q ss_pred hHHHHHHHhhHHHHHhhhhhHHhhHHHHHHHHHHHHHH
Q 005043 586 EGQLAAALVNREAAEKNFSSVLKSRQEMEKKLADSLKE 623 (717)
Q Consensus 586 ~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~ 623 (717)
|.|....-..++++|+.+..+-+-++++|+++....++
T Consensus 526 ~~~~~~~e~~~~~~~~~~~e~~~~~~~l~~~~~~l~~~ 563 (782)
T PRK00409 526 EELERELEQKAEEAEALLKEAEKLKEELEEKKEKLQEE 563 (782)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333444444444444444444444444443333
No 411
>KOG0980 consensus Actin-binding protein SLA2/Huntingtin-interacting protein Hip1 [Cytoskeleton]
Probab=44.44 E-value=62 Score=39.17 Aligned_cols=60 Identities=18% Similarity=0.103 Sum_probs=40.3
Q ss_pred HHHHHHHHhcchhHHHHHHHhhHHHHHhhhhhHHhhHHHHHHHHHHHHHHHHHHHHHHhh
Q 005043 574 KMAALIRKNGILEGQLAAALVNREAAEKNFSSVLKSRQEMEKKLADSLKEMELLKEKLAG 633 (717)
Q Consensus 574 ~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 633 (717)
++...+..-..--+|+..|+...|++|++-...-+-.+++++|.+..-.+--+|++|.+.
T Consensus 390 qLr~elaql~a~r~q~eka~~~~ee~e~~~l~~e~ry~klkek~t~l~~~h~~lL~K~~d 449 (980)
T KOG0980|consen 390 QLRNELAQLLASRTQLEKAQVLVEEAENKALAAENRYEKLKEKYTELRQEHADLLRKYDD 449 (980)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444444444455667777777788888777777777777777777777666666666554
No 412
>PRK10636 putative ABC transporter ATP-binding protein; Provisional
Probab=44.20 E-value=41 Score=40.11 Aligned_cols=34 Identities=12% Similarity=0.165 Sum_probs=19.4
Q ss_pred hhhhHHhhHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 005043 602 NFSSVLKSRQEMEKKLADSLKEMELLKEKLAGLE 635 (717)
Q Consensus 602 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 635 (717)
+++.+.+..++++++|..+..+-|+|-|+++.++
T Consensus 599 ~~~~~~~~~~~~~~~l~~~~~~w~~l~~~~~~~~ 632 (638)
T PRK10636 599 ELTACLQQQASAKSGLEECEMAWLEAQEQLEQML 632 (638)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3444455555666666666666666666554444
No 413
>KOG4673 consensus Transcription factor TMF, TATA element modulatory factor [Transcription]
Probab=44.11 E-value=1e+02 Score=36.40 Aligned_cols=125 Identities=23% Similarity=0.262 Sum_probs=70.3
Q ss_pred HHHHHHHHHHHHhcchhHHHHHHHhhHHHHHhhhhhHHhhHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhcccccccc
Q 005043 570 FYESKMAALIRKNGILEGQLAAALVNREAAEKNFSSVLKSRQEMEKKLADSLKEMELLKEKLAGLELAQEEANSLSNIVH 649 (717)
Q Consensus 570 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 649 (717)
.-=+|+-+-++.++.|+..+-.-....+.-+.+|-+++..+++|||.+.+.-+.+. +.-.-|++.|.-+..
T Consensus 474 ~iIkKLRAk~ke~etl~~K~ge~i~~L~sE~~~lk~il~~Kee~Ek~~~E~I~k~~-------ae~~rq~~~~~~sr~-- 544 (961)
T KOG4673|consen 474 AIIKKLRAKIKEAETLEEKKGELITKLQSEENKLKSILRDKEETEKLLQETIEKHQ-------AELTRQKDYYSNSRA-- 544 (961)
T ss_pred HHHHHHHHHhhhhhHHHHHhhhHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHH-------HHHHHHHHhhhhHHH--
Confidence 34456677777778887777777777777778888888888888887766654332 222234444431111
Q ss_pred cCCccchhhHHHHHHHHHHHHHHhhhhccc---hhhccccceeeEEEeehhhhhhhhhcc
Q 005043 650 SDNVRLEHDVAFLKAVLDDTQKELHSTRGV---LAGERARAFQLQVEVFHLKQRLQSLEN 706 (717)
Q Consensus 650 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~ 706 (717)
+=--||.-.+-+.|-+|..-+.||-.-.+ =|++|---+-.| |-+|++.|+--|.
T Consensus 545 -~~~~le~~~~a~qat~d~a~~Dlqk~nrlkQdear~~~~~lvqq--v~dLR~~L~~~Eq 601 (961)
T KOG4673|consen 545 -LAAALEAQALAEQATNDEARSDLQKENRLKQDEARERESMLVQQ--VEDLRQTLSKKEQ 601 (961)
T ss_pred -HHHHHHHHHHHHHHhhhhhhhhHHHHhhhhhhHHHHHHHHHHHH--HHHHHHHHHHHHH
Confidence 11124444555556666555555432211 133333333333 4478888876553
No 414
>KOG0933 consensus Structural maintenance of chromosome protein 2 (chromosome condensation complex Condensin, subunit E) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=43.97 E-value=1.7e+02 Score=36.27 Aligned_cols=90 Identities=18% Similarity=0.204 Sum_probs=44.1
Q ss_pred HHHHHHHHHHHHhcchhHHHHHHHhhHHHHHh--------------hhhhHHhhHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 005043 570 FYESKMAALIRKNGILEGQLAAALVNREAAEK--------------NFSSVLKSRQEMEKKLADSLKEMELLKEKLAGLE 635 (717)
Q Consensus 570 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~--------------~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 635 (717)
..|.+++++......++.++++.-...|..|. .+++.=..-+++++++.....|...|+-|+.++|
T Consensus 784 ~re~rlkdl~keik~~k~~~e~~~~~~ek~~~e~e~l~lE~e~l~~e~~~~k~~l~~~~~~~~~l~~e~~~l~~kv~~~~ 863 (1174)
T KOG0933|consen 784 NRERRLKDLEKEIKTAKQRAEESSKELEKRENEYERLQLEHEELEKEISSLKQQLEQLEKQISSLKSELGNLEAKVDKVE 863 (1174)
T ss_pred hhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH
Confidence 45555666665555565555555444444433 3333333333334444444444444444444444
Q ss_pred hhhhhhcccccccccCCccchhhHHHHHHHHHHHHHHh
Q 005043 636 LAQEEANSLSNIVHSDNVRLEHDVAFLKAVLDDTQKEL 673 (717)
Q Consensus 636 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 673 (717)
.-++ .+..+|+-.||.+-+..+|+
T Consensus 864 ~~~~--------------~~~~el~~~k~k~~~~dt~i 887 (1174)
T KOG0933|consen 864 KDVK--------------KAQAELKDQKAKQRDIDTEI 887 (1174)
T ss_pred hHHH--------------HHHHHHHHHHHHHHhhhHHH
Confidence 3332 23345666777776666655
No 415
>PRK06231 F0F1 ATP synthase subunit B; Validated
Probab=43.92 E-value=81 Score=31.88 Aligned_cols=46 Identities=7% Similarity=0.061 Sum_probs=28.1
Q ss_pred chhHHHHHHHhhHHHHHhhhhhHHhhHHHHHHHHHHHHHHHHHHHH
Q 005043 584 ILEGQLAAALVNREAAEKNFSSVLKSRQEMEKKLADSLKEMELLKE 629 (717)
Q Consensus 584 ~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 629 (717)
.|+..=.....+.++||+....+-+..++.+++|+++.+|...+.+
T Consensus 76 ~L~~R~~~I~~~L~~Ae~~~~eA~~~l~e~e~~L~~A~~eA~~Ii~ 121 (205)
T PRK06231 76 FLNKRKELIEAEINQANELKQQAQQLLENAKQRHENALAQAKEIID 121 (205)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555555556666666666666666666666666666666555433
No 416
>PF10960 DUF2762: Protein of unknown function (DUF2762); InterPro: IPR024405 BhlA is a SP-beta prophage-derived protein found in Bacillus subtilis [, ] and other Bacilli. A related protein, UviB, has also been described in Clostridia, where it is believed to be involved in bacteriocin secretion or immunity [, ].
Probab=43.88 E-value=59 Score=27.12 Aligned_cols=46 Identities=15% Similarity=0.272 Sum_probs=29.8
Q ss_pred HHHHhcchhHHHHHHHhhHHHHHhhhhhHHhhHHHHHHHHHHHHHHHHHHHHH
Q 005043 578 LIRKNGILEGQLAAALVNREAAEKNFSSVLKSRQEMEKKLADSLKEMELLKEK 630 (717)
Q Consensus 578 ~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 630 (717)
.++.|..+|.+.. +=|+++..+++.-.+-=..++++.+.++..|+|
T Consensus 26 vlK~~~~re~~~~-------~RE~kyq~~I~~lte~~~~~~~~~~dv~ei~~k 71 (71)
T PF10960_consen 26 VLKENKKREEKQE-------EREEKYQEQIEKLTEKLNVIEEIKEDVKEIKEK 71 (71)
T ss_pred HHHHhHHhHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 4555666655444 667888888877666666666666666666554
No 417
>PRK14471 F0F1 ATP synthase subunit B; Provisional
Probab=43.70 E-value=1.2e+02 Score=29.14 Aligned_cols=30 Identities=17% Similarity=0.169 Sum_probs=18.9
Q ss_pred HHHHHhcchhHHHHHHHhhHHHHHhhhhhH
Q 005043 577 ALIRKNGILEGQLAAALVNREAAEKNFSSV 606 (717)
Q Consensus 577 ~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~ 606 (717)
.+=.|....+++|+.|-..+++|++.+...
T Consensus 36 ~l~~R~~~I~~~l~~A~~~~~ea~~~~~e~ 65 (164)
T PRK14471 36 AVKEREDSIKNALASAEEARKEMQNLQADN 65 (164)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555666777777777777776655443
No 418
>CHL00118 atpG ATP synthase CF0 B' subunit; Validated
Probab=43.69 E-value=1.5e+02 Score=28.43 Aligned_cols=28 Identities=14% Similarity=0.027 Sum_probs=15.6
Q ss_pred HHHHHhcchhHHHHHHHhhHHHHHhhhh
Q 005043 577 ALIRKNGILEGQLAAALVNREAAEKNFS 604 (717)
Q Consensus 577 ~~~~~~~~~~~~~~~~~~~~~~~e~~~~ 604 (717)
.+-.|.....++|+.|-..+++|++.++
T Consensus 50 ~l~~R~~~I~~~l~~Ae~~~~ea~~~~~ 77 (156)
T CHL00118 50 VLDERKEYIRKNLTKASEILAKANELTK 77 (156)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444555556666666666666555444
No 419
>PRK04406 hypothetical protein; Provisional
Probab=43.65 E-value=84 Score=26.47 Aligned_cols=53 Identities=17% Similarity=0.162 Sum_probs=33.5
Q ss_pred HHHHHHHHHHHHHhhhhhhhhhhcccccccccCCccchhhHHHHHHHHHHHHHHhhhhccchhhccccceeeEEEeehhh
Q 005043 619 DSLKEMELLKEKLAGLELAQEEANSLSNIVHSDNVRLEHDVAFLKAVLDDTQKELHSTRGVLAGERARAFQLQVEVFHLK 698 (717)
Q Consensus 619 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 698 (717)
....-++.|.+|||=.|..-|+-|. |+-.-||++.--+ -.+-+|+
T Consensus 8 ~le~Ri~~LE~~lAfQE~tIe~LN~---------------------~v~~Qq~~I~~L~--------------~ql~~L~ 52 (75)
T PRK04406 8 QLEERINDLECQLAFQEQTIEELND---------------------ALSQQQLLITKMQ--------------DQMKYVV 52 (75)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH---------------------HHHHHHHHHHHHH--------------HHHHHHH
Confidence 3444556677788777776666665 4445566654322 3455788
Q ss_pred hhhhhhcc
Q 005043 699 QRLQSLEN 706 (717)
Q Consensus 699 ~~~~~~~~ 706 (717)
+||.+++.
T Consensus 53 ~rl~~~~~ 60 (75)
T PRK04406 53 GKVKNMDS 60 (75)
T ss_pred HHHHhhcc
Confidence 99988884
No 420
>PRK11032 hypothetical protein; Provisional
Probab=43.50 E-value=2.2e+02 Score=27.64 Aligned_cols=101 Identities=19% Similarity=0.191 Sum_probs=45.8
Q ss_pred HHHHHHHHHHHHHHHhcchhHHHHHHHhhHHHHHhhhhhHHhhHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhccccc
Q 005043 567 IYQFYESKMAALIRKNGILEGQLAAALVNREAAEKNFSSVLKSRQEMEKKLADSLKEMELLKEKLAGLELAQEEANSLSN 646 (717)
Q Consensus 567 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 646 (717)
+-+.|+.=+..+.......+..|..++..-++.+..++.+ +|+|++.=-+-..++++.+-.-+ +|-.+.|+-
T Consensus 4 ~~~~Y~~ll~~v~~~l~~~~~~l~~~ve~a~~~~~~~~el--T~dEl~lv~~ylkRDL~ef~~~~------~~~~~~~~~ 75 (160)
T PRK11032 4 VAQYYRELVASLTERLRNGERDIDALVESARKRVDAAGEL--TRDEVDLITRAVRRDLEEFARSY------EESKEEFSD 75 (160)
T ss_pred HHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHhc--CHHHHHHHHHHHHHHHHHHHHHH------Hhccccccc
Confidence 4456666666555555544444444433332222222222 34444444444444433322211 122222222
Q ss_pred ccccCCccchhhHHHHHHHHHHHHHHhhhh
Q 005043 647 IVHSDNVRLEHDVAFLKAVLDDTQKELHST 676 (717)
Q Consensus 647 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 676 (717)
-+= -.+-.|.=-..|.-|.|.||-|.|.-
T Consensus 76 s~~-~~~i~~slw~~L~~ItDrTqvEw~el 104 (160)
T PRK11032 76 SVF-MRVIKESLWQELADITDKTQLEWREV 104 (160)
T ss_pred cHH-HHHHHHHHHHHHHHHHHHhHHHHHHH
Confidence 221 11222333567889999999988753
No 421
>PF08606 Prp19: Prp19/Pso4-like; InterPro: IPR013915 This region is found specifically in PRP19-like protein. The region represented by this protein covers the sequence implicated in self-interaction and a coiled-coiled motif []. PRP19-like proteins form an oligomer that is necessary for spliceosome assembly [].
Probab=43.36 E-value=1e+02 Score=25.58 Aligned_cols=50 Identities=24% Similarity=0.252 Sum_probs=37.2
Q ss_pred HHHHHHHHHHHHhcchhHHHHHHHhhHHHHHhhhhhHHhhHHHHHHHHHH
Q 005043 570 FYESKMAALIRKNGILEGQLAAALVNREAAEKNFSSVLKSRQEMEKKLAD 619 (717)
Q Consensus 570 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~ 619 (717)
..-.+.-.+.+....+..+|+.||=..|+|-+=.+.++|.|.++.+-|+.
T Consensus 19 a~mLE~f~LRk~l~~~rqELs~aLYq~DAA~RViArl~kErd~ar~~l~~ 68 (70)
T PF08606_consen 19 ALMLENFTLRKQLDQTRQELSHALYQHDAACRVIARLLKERDEAREALAE 68 (70)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhHHHHHHHHHh
Confidence 33344445666677888889999999999988888888888877776654
No 422
>KOG3850 consensus Predicted membrane protein [Function unknown]
Probab=43.01 E-value=64 Score=35.31 Aligned_cols=26 Identities=15% Similarity=0.152 Sum_probs=11.5
Q ss_pred HHHHHhhHHHHHhhhhhHHhhHHHHH
Q 005043 589 LAAALVNREAAEKNFSSVLKSRQEME 614 (717)
Q Consensus 589 ~~~~~~~~~~~e~~~~~~~~~~~~~~ 614 (717)
|++.+++.+++..-.+.+=+|.+-+|
T Consensus 262 l~aileeL~eIk~~q~~Leesye~Lk 287 (455)
T KOG3850|consen 262 LDAILEELREIKETQALLEESYERLK 287 (455)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444444444444444444444433
No 423
>PRK10476 multidrug resistance protein MdtN; Provisional
Probab=43.00 E-value=88 Score=34.05 Aligned_cols=66 Identities=17% Similarity=0.172 Sum_probs=40.5
Q ss_pred HHHHHHHHHhcchhHHHHHHHhhHHHHHhhhhhHHhhHHHHHHHHHHHHHHHHHHHHHHhhhhhhh
Q 005043 573 SKMAALIRKNGILEGQLAAALVNREAAEKNFSSVLKSRQEMEKKLADSLKEMELLKEKLAGLELAQ 638 (717)
Q Consensus 573 ~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 638 (717)
.+.+.|..++.+-+.+++.+.+..++|+.++..+-...+.++..+.++......++..-+.++.|+
T Consensus 138 ~R~~~L~~~g~vS~~~~~~a~~~~~~a~~~l~~a~~~~~~~~~~~~~~~~~~a~~~~~~a~l~~a~ 203 (346)
T PRK10476 138 ERLEPLLAKGYVSAQQVDQARTAQRDAEVSLNQALLQAQAAAAAVGGVDALVAQRAAREAALAIAE 203 (346)
T ss_pred HHHHHHHHCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHH
Confidence 345567777788888888888888888877776655555555555444433344444444444443
No 424
>PF15619 Lebercilin: Ciliary protein causing Leber congenital amaurosis disease
Probab=42.99 E-value=1.1e+02 Score=30.58 Aligned_cols=138 Identities=25% Similarity=0.343 Sum_probs=88.4
Q ss_pred HHHHHHHHHHHHHhcchhHH---HHHHHhhHHHHHhhhhhHHhhHHHHH-------HHHHHHHHHHHH-HHHHHhhhhhh
Q 005043 569 QFYESKMAALIRKNGILEGQ---LAAALVNREAAEKNFSSVLKSRQEME-------KKLADSLKEMEL-LKEKLAGLELA 637 (717)
Q Consensus 569 ~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~e~~~~~~~~~~~~~~-------~~~~~~~~~~~~-l~~~~~~~~~~ 637 (717)
..-..+++.+...|-.|... -+.||..-|-.|..|.-++....+== ++..+..++.+. ||++=+.+...
T Consensus 22 ~elq~~l~~l~~ENk~Lk~lq~Rq~kAL~k~e~~e~~Lpqll~~h~eEvr~Lr~~LR~~q~~~r~~~~klk~~~~el~k~ 101 (194)
T PF15619_consen 22 AELQRKLQELRKENKTLKQLQKRQEKALQKYEDTEAELPQLLQRHNEEVRVLRERLRKSQEQERELERKLKDKDEELLKT 101 (194)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34556677777777766554 34466667777777776654433211 222222233322 55555555566
Q ss_pred hhhhcccccccccCCcc----chhhHHHHHHHHHHHHHHhh-----------hhccchhhccccceeeEEEeehhhhhhh
Q 005043 638 QEEANSLSNIVHSDNVR----LEHDVAFLKAVLDDTQKELH-----------STRGVLAGERARAFQLQVEVFHLKQRLQ 702 (717)
Q Consensus 638 ~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~-----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 702 (717)
+.+...|..+|-.-|+- |...|.-+++.|++..+.+. +-+.-|+.|+.+...+|.+|-+|...++
T Consensus 102 ~~~l~~L~~L~~dknL~eReeL~~kL~~~~~~l~~~~~ki~~Lek~leL~~k~~~rql~~e~kK~~~~~~~~~~l~~ei~ 181 (194)
T PF15619_consen 102 KDELKHLKKLSEDKNLAEREELQRKLSQLEQKLQEKEKKIQELEKQLELENKSFRRQLASEKKKHKEAQEEVKSLQEEIQ 181 (194)
T ss_pred HHHHHHHHHHHHcCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 66666676776666663 45678888888888776543 5577788899999999999988888887
Q ss_pred hhcc
Q 005043 703 SLEN 706 (717)
Q Consensus 703 ~~~~ 706 (717)
.|..
T Consensus 182 ~L~~ 185 (194)
T PF15619_consen 182 RLNQ 185 (194)
T ss_pred HHHH
Confidence 7764
No 425
>PRK15136 multidrug efflux system protein EmrA; Provisional
Probab=42.98 E-value=86 Score=34.93 Aligned_cols=22 Identities=14% Similarity=0.018 Sum_probs=15.5
Q ss_pred chhhHHHHHHHHHHHHHHhhhh
Q 005043 655 LEHDVAFLKAVLDDTQKELHST 676 (717)
Q Consensus 655 ~~~~~~~~~~~~~~~~~~~~~~ 676 (717)
.+..++-.+|-++..+..|..|
T Consensus 195 ~~~~v~~a~a~l~~a~~~L~~t 216 (390)
T PRK15136 195 DQPAVQQAATEVRNAWLALQRT 216 (390)
T ss_pred hHHHHHHHHHHHHHHHHHHhCC
Confidence 3456667778888888777655
No 426
>PF12329 TMF_DNA_bd: TATA element modulatory factor 1 DNA binding; InterPro: IPR022092 This is the middle region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes that contains at its N-terminal section a number of leucine zippers that could potentially form coiled coil structures. The whole proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant [] cells.
Probab=42.88 E-value=41 Score=28.24 Aligned_cols=64 Identities=31% Similarity=0.359 Sum_probs=32.8
Q ss_pred HHHHHHHHHHHHHHHH---HHHhhhhhhhhhhcccccccccCCccchhhHHHHHHHHHHHHHHhhhhccc
Q 005043 613 MEKKLADSLKEMELLK---EKLAGLELAQEEANSLSNIVHSDNVRLEHDVAFLKAVLDDTQKELHSTRGV 679 (717)
Q Consensus 613 ~~~~~~~~~~~~~~l~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 679 (717)
|+++|++....++.|. |||+.-|++...... -.-..|--+|.+++=|+.=+++..+++.+-+..
T Consensus 3 l~~~l~EKDe~Ia~L~eEGekLSk~el~~~~~IK---KLr~~~~e~e~~~~~l~~~~~~~e~~~~~l~~~ 69 (74)
T PF12329_consen 3 LEKKLAEKDEQIAQLMEEGEKLSKKELKLNNTIK---KLRAKIKELEKQIKELKKKLEELEKELESLEER 69 (74)
T ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHhhHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5566666666666666 444444433321111 112334445566666666666666666554443
No 427
>PRK15422 septal ring assembly protein ZapB; Provisional
Probab=42.62 E-value=2.1e+02 Score=24.31 Aligned_cols=63 Identities=14% Similarity=0.194 Sum_probs=25.5
Q ss_pred HHHHHHHHHHHHhcchhHHHHHHHhhHHHHHhhhhhHHhhHHHHHHHHHHHHHHHHHHHHHHh
Q 005043 570 FYESKMAALIRKNGILEGQLAAALVNREAAEKNFSSVLKSRQEMEKKLADSLKEMELLKEKLA 632 (717)
Q Consensus 570 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 632 (717)
-.|.||+++|.--..|.-.++.--....++......+..+|.+++.+-.....|..--.++|.
T Consensus 8 qLE~KIqqAvdtI~LLqmEieELKekn~~L~~e~~~~~~~r~~L~~en~qLk~E~~~WqerLr 70 (79)
T PRK15422 8 KLEAKVQQAIDTITLLQMEIEELKEKNNSLSQEVQNAQHQREELERENNHLKEQQNGWQERLQ 70 (79)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334455544444444433333333333333333333344444444444444444444444443
No 428
>PF10146 zf-C4H2: Zinc finger-containing protein ; InterPro: IPR018482 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents a family of proteins which appears to have a highly conserved zinc finger domain at the C-terminal end, described as -C-X2-CH-X3-H-X5-C-X2-C-. The structure is predicted to contain a coiled coil. Members of this family are annotated as being tumour-associated antigen HCA127 in humans, but this could not be confirmed.
Probab=42.47 E-value=1.3e+02 Score=31.07 Aligned_cols=20 Identities=30% Similarity=0.368 Sum_probs=14.3
Q ss_pred ccchhhHHHHHHHHHHHHHH
Q 005043 653 VRLEHDVAFLKAVLDDTQKE 672 (717)
Q Consensus 653 ~~~~~~~~~~~~~~~~~~~~ 672 (717)
.|+.+|+.=||-=.|+.-+|
T Consensus 84 ~r~~eey~~Lk~~in~~R~e 103 (230)
T PF10146_consen 84 QRLYEEYKPLKDEINELRKE 103 (230)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 45566777777777777777
No 429
>PF14131 DUF4298: Domain of unknown function (DUF4298)
Probab=42.46 E-value=28 Score=30.37 Aligned_cols=49 Identities=27% Similarity=0.221 Sum_probs=43.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhcccccccccCCccchhh
Q 005043 610 RQEMEKKLADSLKEMELLKEKLAGLELAQEEANSLSNIVHSDNVRLEHD 658 (717)
Q Consensus 610 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 658 (717)
.++||+++....+.++.|.+-+...+.+|++...|.+--+|.+=+--||
T Consensus 2 I~eme~~y~~~~~~l~~le~~l~~~~~~~~~~~~L~~YY~s~~w~~d~e 50 (90)
T PF14131_consen 2 IQEMEKIYNEWCELLEELEEALEKWQEAQPDYRKLRDYYGSEEWMEDYE 50 (90)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCcHhHHHHHH
Confidence 4799999999999999999999999999999999999888887665554
No 430
>PRK04778 septation ring formation regulator EzrA; Provisional
Probab=42.44 E-value=1.1e+02 Score=35.93 Aligned_cols=40 Identities=35% Similarity=0.412 Sum_probs=28.8
Q ss_pred hhhhHHhhHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhh
Q 005043 602 NFSSVLKSRQEMEKKLADSLKEMELLKEKLAGLELAQEEA 641 (717)
Q Consensus 602 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 641 (717)
..+.+.+..+++.+++..+.++.+.+++.|.+++..+.++
T Consensus 377 ~ysel~e~leel~e~leeie~eq~ei~e~l~~Lrk~E~eA 416 (569)
T PRK04778 377 AYSELQEELEEILKQLEEIEKEQEKLSEMLQGLRKDELEA 416 (569)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566667777777777788888888888887777666544
No 431
>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]
Probab=42.42 E-value=4.9e+02 Score=28.46 Aligned_cols=254 Identities=17% Similarity=0.204 Sum_probs=122.3
Q ss_pred CEEEEEcccCCCCCcccEEEEEcCCCceEEccccccCCCCCCCCCCCcccceEEEEECCEEEEEeccCCCCCCceEEEEE
Q 005043 99 NKMIVVGGESGNGLLDDVQVLNFDRFSWTAASSKLYLSPSSLPLKIPACRGHSLISWGKKVLLVGGKTDSGSDRVSVWTF 178 (717)
Q Consensus 99 ~~lyV~GG~~~~~~~~~v~~yd~~t~~W~~l~~~~~~~~~~~~~~~p~r~~hs~v~~~~~Iyv~GG~~~~~~~~~~v~~y 178 (717)
..+|++...++.+ --..+.+|+.+++-+.+..... + ..+| .|.++.-++.+++..-+. ...+-+|
T Consensus 52 ~~LY~v~~~~~~g-gvaay~iD~~~G~Lt~ln~~~~--~----g~~p---~yvsvd~~g~~vf~AnY~-----~g~v~v~ 116 (346)
T COG2706 52 RHLYVVNEPGEEG-GVAAYRIDPDDGRLTFLNRQTL--P----GSPP---CYVSVDEDGRFVFVANYH-----SGSVSVY 116 (346)
T ss_pred CEEEEEEecCCcC-cEEEEEEcCCCCeEEEeecccc--C----CCCC---eEEEECCCCCEEEEEEcc-----CceEEEE
Confidence 3588877654332 1234666777677777654211 0 1111 233333334333333332 2345666
Q ss_pred ECCC--CcEEEee---ecCCCCCCc--e--eeEEEEE-CC-EEEEEccccCCCCCcCcEEEEEcCCCceEeccCCCCCCC
Q 005043 179 DTET--ECWSVVE---AKGDIPVAR--S--GHTVVRA-SS-VLILFGGEDGKRRKLNDLHMFDLKSLTWLPLHCTGTGPS 247 (717)
Q Consensus 179 D~~t--~~W~~l~---~~g~~P~~R--~--~hs~~~~-~~-~Lyv~GG~~~~~~~~~~v~~yD~~t~~W~~l~~~g~~P~ 247 (717)
-+.. .-|..+. -.+..|.+| . .|.+..- ++ .|++. + --.+.+..|++..+.-+.....--.|.
T Consensus 117 p~~~dG~l~~~v~~~~h~g~~p~~rQ~~~h~H~a~~tP~~~~l~v~----D--LG~Dri~~y~~~dg~L~~~~~~~v~~G 190 (346)
T COG2706 117 PLQADGSLQPVVQVVKHTGSGPHERQESPHVHSANFTPDGRYLVVP----D--LGTDRIFLYDLDDGKLTPADPAEVKPG 190 (346)
T ss_pred EcccCCccccceeeeecCCCCCCccccCCccceeeeCCCCCEEEEe----e--cCCceEEEEEcccCccccccccccCCC
Confidence 5543 2243322 223335555 2 2333322 33 44444 1 125778999998776655432212222
Q ss_pred CCcccEEEEECCcEEEEEcCCCCCCCCCeEEEEECCCCcEEEeecCCCCCCC---CcceEEEEE---CCEEEEEecCCCC
Q 005043 248 PRSNHVAALYDDKNLLIFGGSSKSKTLNDLYSLDFETMIWTRIKIRGFHPSP---RAGCCGVLC---GTKWYIAGGGSRK 321 (717)
Q Consensus 248 ~R~~~aa~~~~~~~lyV~GG~~~~~~~ndv~~yd~~t~~W~~v~~~g~~P~~---R~~~sav~~---~~~IyV~GG~~~~ 321 (717)
.--.|-+.--+++..|++.--++. =++|.||......+.+.....+|.. -.+.+++.+ +..+|+.--.
T Consensus 191 ~GPRHi~FHpn~k~aY~v~EL~st---V~v~~y~~~~g~~~~lQ~i~tlP~dF~g~~~~aaIhis~dGrFLYasNRg--- 264 (346)
T COG2706 191 AGPRHIVFHPNGKYAYLVNELNST---VDVLEYNPAVGKFEELQTIDTLPEDFTGTNWAAAIHISPDGRFLYASNRG--- 264 (346)
T ss_pred CCcceEEEcCCCcEEEEEeccCCE---EEEEEEcCCCceEEEeeeeccCccccCCCCceeEEEECCCCCEEEEecCC---
Confidence 222343333356688988765432 2578888877888888775555542 223333333 4456655422
Q ss_pred CccCeEEEE--ECCCCcEEEeecCCCCCCCCCcceEEEEEEeCCCcEEEEEcCCCCCCCCeEEEEEccCCc
Q 005043 322 KRHAETLIF--DILKGEWSVAITSPSSSVTSNKGFTLVLVQHKEKDFLVAFGGIKKEPSNQVEVLSIEKNE 390 (717)
Q Consensus 322 ~~~~dv~~y--D~~t~~W~~l~~~p~~~~~~r~g~s~v~v~~~~~~~I~v~GG~~~~~~n~v~vyd~~~~e 390 (717)
.+.+++| |+.+..-..+...+.....+|. |... .+++.|++.+- + ++.+.+|.++..+
T Consensus 265 --~dsI~~f~V~~~~g~L~~~~~~~teg~~PR~-F~i~----~~g~~Liaa~q-~---sd~i~vf~~d~~T 324 (346)
T COG2706 265 --HDSIAVFSVDPDGGKLELVGITPTEGQFPRD-FNIN----PSGRFLIAANQ-K---SDNITVFERDKET 324 (346)
T ss_pred --CCeEEEEEEcCCCCEEEEEEEeccCCcCCcc-ceeC----CCCCEEEEEcc-C---CCcEEEEEEcCCC
Confidence 2345555 5666655555443433333442 2211 22445544433 2 3356777666554
No 432
>PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A.
Probab=42.38 E-value=3e+02 Score=30.71 Aligned_cols=135 Identities=13% Similarity=0.078 Sum_probs=63.6
Q ss_pred cccEEEEEcCCCceEEccccccCCCCCCCCCCCcccceEEEEE-CCEEEEEeccCCCCCCceEEEEEECCCCcEEEeeec
Q 005043 113 LDDVQVLNFDRFSWTAASSKLYLSPSSLPLKIPACRGHSLISW-GKKVLLVGGKTDSGSDRVSVWTFDTETECWSVVEAK 191 (717)
Q Consensus 113 ~~~v~~yd~~t~~W~~l~~~~~~~~~~~~~~~p~r~~hs~v~~-~~~Iyv~GG~~~~~~~~~~v~~yD~~t~~W~~l~~~ 191 (717)
...+...|+.++..+.+-. .....+|....- +..+++|.=..........+|..|........+..
T Consensus 167 ~~~i~~idl~tG~~~~v~~------------~~~wlgH~~fsP~dp~li~fCHEGpw~~Vd~RiW~i~~dg~~~~~v~~- 233 (386)
T PF14583_consen 167 HCRIFTIDLKTGERKVVFE------------DTDWLGHVQFSPTDPTLIMFCHEGPWDLVDQRIWTINTDGSNVKKVHR- 233 (386)
T ss_dssp -EEEEEEETTT--EEEEEE------------ESS-EEEEEEETTEEEEEEEEE-S-TTTSS-SEEEEETTS---EESS--
T ss_pred CceEEEEECCCCceeEEEe------------cCccccCcccCCCCCCEEEEeccCCcceeceEEEEEEcCCCcceeeec-
Confidence 4456777777777766644 123335554443 44566663322222223369999988766666543
Q ss_pred CCCCCCceeeEEEEECC-EEEEEccccCCCCCcCcEEEEEcCCCceEeccCCCCCCCCCcccEEEEECCcEEEEEcCCC
Q 005043 192 GDIPVARSGHTVVRASS-VLILFGGEDGKRRKLNDLHMFDLKSLTWLPLHCTGTGPSPRSNHVAALYDDKNLLIFGGSS 269 (717)
Q Consensus 192 g~~P~~R~~hs~~~~~~-~Lyv~GG~~~~~~~~~~v~~yD~~t~~W~~l~~~g~~P~~R~~~aa~~~~~~~lyV~GG~~ 269 (717)
.++....+|=--..+| .|+..+...+. .-.-+..||+.+..=+.+. .+| .+.|-....+++ ++|--|.+
T Consensus 234 -~~~~e~~gHEfw~~DG~~i~y~~~~~~~--~~~~i~~~d~~t~~~~~~~---~~p--~~~H~~ss~Dg~-L~vGDG~d 303 (386)
T PF14583_consen 234 -RMEGESVGHEFWVPDGSTIWYDSYTPGG--QDFWIAGYDPDTGERRRLM---EMP--WCSHFMSSPDGK-LFVGDGGD 303 (386)
T ss_dssp ---TTEEEEEEEE-TTSS-EEEEEEETTT----EEEEEE-TTT--EEEEE---EE---SEEEEEE-TTSS-EEEEEE--
T ss_pred -CCCCcccccccccCCCCEEEEEeecCCC--CceEEEeeCCCCCCceEEE---eCC--ceeeeEEcCCCC-EEEecCCC
Confidence 2344445555555555 44444332322 2345788999887533332 343 577878878888 77655553
No 433
>PF07716 bZIP_2: Basic region leucine zipper; InterPro: IPR011700 The basic-leucine zipper (bZIP) transcription factors [, ] of eukaryotes are proteins that contain a basic region mediating sequence-specific DNA-binding, followed by a leucine zipper region (see IPR002158 from INTERPRO), which is required for dimerization.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0043565 sequence-specific DNA binding, 0046983 protein dimerization activity, 0006355 regulation of transcription, DNA-dependent; PDB: 1NWQ_A 1H89_B 1H88_A 1GTW_B 2E43_A 1IO4_A 1GU4_B 2E42_A 1H8A_B 1GU5_B ....
Probab=42.31 E-value=97 Score=24.05 Aligned_cols=26 Identities=31% Similarity=0.516 Sum_probs=15.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhh
Q 005043 610 RQEMEKKLADSLKEMELLKEKLAGLE 635 (717)
Q Consensus 610 ~~~~~~~~~~~~~~~~~l~~~~~~~~ 635 (717)
.++|+.++.....+.+.|+.+++.++
T Consensus 27 ~~~le~~~~~L~~en~~L~~~i~~L~ 52 (54)
T PF07716_consen 27 EEELEQEVQELEEENEQLRQEIAQLE 52 (54)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34556666666666666666666554
No 434
>KOG0999 consensus Microtubule-associated protein Bicaudal-D [Intracellular trafficking, secretion, and vesicular transport]
Probab=42.14 E-value=1.9e+02 Score=33.36 Aligned_cols=24 Identities=25% Similarity=0.372 Sum_probs=19.2
Q ss_pred ccchhhHHHHHHHHHHHHHHhhhh
Q 005043 653 VRLEHDVAFLKAVLDDTQKELHST 676 (717)
Q Consensus 653 ~~~~~~~~~~~~~~~~~~~~~~~~ 676 (717)
+-||.|+.-|.+||..+|.|+.+-
T Consensus 110 ~eleneLKq~r~el~~~q~E~erl 133 (772)
T KOG0999|consen 110 LELENELKQLRQELTNVQEENERL 133 (772)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 357888999999999999887653
No 435
>PRK05759 F0F1 ATP synthase subunit B; Validated
Probab=42.13 E-value=97 Score=29.48 Aligned_cols=34 Identities=21% Similarity=0.161 Sum_probs=13.2
Q ss_pred HHHhhHHHHHhhhhhHHhhHHHHHHHHHHHHHHH
Q 005043 591 AALVNREAAEKNFSSVLKSRQEMEKKLADSLKEM 624 (717)
Q Consensus 591 ~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~ 624 (717)
......+.|++....+-+-+++.+++|+++.+|.
T Consensus 39 ~I~~~l~~a~~~~~~a~~~~~e~~~~l~~a~~ea 72 (156)
T PRK05759 39 KIADGLAAAERAKKELELAQAKYEAQLAEARAEA 72 (156)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333333333333333333334443333333
No 436
>TIGR02977 phageshock_pspA phage shock protein A. Members of this family are the phage shock protein PspA, from the phage shock operon. This is a narrower family than the set of PspA and its homologs, sometimes several in a genome, as described by PFAM model pfam04012. PspA appears to maintain the protonmotive force under stress conditions that include overexpression of certain phage secretins, heat shock, ethanol, and protein export defects.
Probab=41.92 E-value=1.5e+02 Score=30.25 Aligned_cols=46 Identities=22% Similarity=0.298 Sum_probs=26.3
Q ss_pred HHhhHHHHHhhhhhHHhhHHHHHHHHHHHHHHHHHHHHHHhhhhhh
Q 005043 592 ALVNREAAEKNFSSVLKSRQEMEKKLADSLKEMELLKEKLAGLELA 637 (717)
Q Consensus 592 ~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 637 (717)
||..|...+..+..+-.+.+.++..++.+...++.|+.|+..++..
T Consensus 90 Al~~k~~~~~~~~~l~~~~~~~~~~v~~l~~~l~~L~~ki~~~k~k 135 (219)
T TIGR02977 90 ALIEKQKAQELAEALERELAAVEETLAKLQEDIAKLQAKLAEARAR 135 (219)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555555555555555555556665666666666666665555443
No 437
>PRK10920 putative uroporphyrinogen III C-methyltransferase; Provisional
Probab=41.85 E-value=1.3e+02 Score=33.58 Aligned_cols=133 Identities=20% Similarity=0.264 Sum_probs=76.4
Q ss_pred HHHHHHHHhcchhHHHHHHH----hhHHHHHhhhhhHHhhHHHHHHHHHHHHHHHHHHHHHHhhhhhhh------hhhcc
Q 005043 574 KMAALIRKNGILEGQLAAAL----VNREAAEKNFSSVLKSRQEMEKKLADSLKEMELLKEKLAGLELAQ------EEANS 643 (717)
Q Consensus 574 ~~~~~~~~~~~~~~~~~~~~----~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~------~~~~~ 643 (717)
+.+..-..+..|..||++.. +.+.+++..+..+.+...++|.+++...+.++.|+++++.+.... .|+.-
T Consensus 61 q~~~~~~~~~~L~~ql~~~~~~~~~~~~~l~~~~~~~~~~l~~~e~~~~~l~~q~~~Lq~~~~~ls~~~~~dWlLaEaey 140 (390)
T PRK10920 61 QAQNQTATNDALANQLTALQKAQESQKQELEGILKQQAKALDQANRQQAALAKQLDELQQKVATISGSDAKTWLLAQADF 140 (390)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCChhhHHHHHHHH
Confidence 33335567778888876653 334455555555566677777788888888888888887664333 12222
Q ss_pred cccccccCCccchhhHHHHHHHHHHHHH--------Hhhhhccchhhcccc--ceeeEEEeehhhhhhhhhcccC
Q 005043 644 LSNIVHSDNVRLEHDVAFLKAVLDDTQK--------ELHSTRGVLAGERAR--AFQLQVEVFHLKQRLQSLENRA 708 (717)
Q Consensus 644 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~ 708 (717)
|=+|- .-.+.|||||.=.-|.|..-.. .|...|..||-+=++ +.. +|.+--|=.||..|.++.
T Consensus 141 LlrlA-~qkL~l~~Dv~tA~alLksAD~rLa~~~dP~l~~lR~Aia~DI~~L~av~-~vD~~Gl~lrL~~L~~qV 213 (390)
T PRK10920 141 LVKLA-GRKLWSDQDVTTAAALLKSADASLADMNDPSLITVRRAITDDIATLSAVS-QVDYDGIILKLNQLSNQV 213 (390)
T ss_pred HHHHH-HHHHHHcCCHHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHcCC-CCCHHHHHHHHHHHHHHH
Confidence 22221 2358899998666666554443 345567777755332 221 244444555555555443
No 438
>KOG3478 consensus Prefoldin subunit 6, KE2 family [Posttranslational modification, protein turnover, chaperones]
Probab=41.48 E-value=2.2e+02 Score=25.73 Aligned_cols=39 Identities=23% Similarity=0.328 Sum_probs=31.4
Q ss_pred HHHhhhhhHHhhHHHHHHHHHHHHHHHHHHHHHHhhhhh
Q 005043 598 AAEKNFSSVLKSRQEMEKKLADSLKEMELLKEKLAGLEL 636 (717)
Q Consensus 598 ~~e~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 636 (717)
-++|+|-=|.+.....|..+.|+.+|++..|++|+.+..
T Consensus 73 nV~kRlefI~~Eikr~e~~i~d~q~e~~k~R~~v~k~Q~ 111 (120)
T KOG3478|consen 73 NVGKRLEFISKEIKRLENQIRDSQEEFEKQREAVIKLQQ 111 (120)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345677777788888888899999999999999987753
No 439
>PF15070 GOLGA2L5: Putative golgin subfamily A member 2-like protein 5
Probab=41.39 E-value=2e+02 Score=34.13 Aligned_cols=37 Identities=32% Similarity=0.373 Sum_probs=27.9
Q ss_pred CCchHHHHHHHHHHHHHHHhcchhHHHHHHHhhHHHH
Q 005043 563 GPSSIYQFYESKMAALIRKNGILEGQLAAALVNREAA 599 (717)
Q Consensus 563 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 599 (717)
.+|...+....++..|-++.+.|++||.+-+...+..
T Consensus 77 ~pse~E~~Lq~E~~~L~kElE~L~~qlqaqv~~ne~L 113 (617)
T PF15070_consen 77 GPSEVEQQLQAEAEHLRKELESLEEQLQAQVENNEQL 113 (617)
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455667777888888888889999998877666654
No 440
>PRK04778 septation ring formation regulator EzrA; Provisional
Probab=41.39 E-value=72 Score=37.54 Aligned_cols=58 Identities=16% Similarity=0.157 Sum_probs=45.0
Q ss_pred HHHHHHHHHhcchhHHHHHHHhhHHHHHhhhhhHHhhHHHHHHHHHHHHHHHHHHHHH
Q 005043 573 SKMAALIRKNGILEGQLAAALVNREAAEKNFSSVLKSRQEMEKKLADSLKEMELLKEK 630 (717)
Q Consensus 573 ~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 630 (717)
.++..+-.+-..|-.+|..-...+..+||+...+.+...++++....+..|++.|++.
T Consensus 282 ~~~~~i~~~Id~Lyd~lekE~~A~~~vek~~~~l~~~l~~~~e~~~~l~~Ei~~l~~s 339 (569)
T PRK04778 282 EKNEEIQERIDQLYDILEREVKARKYVEKNSDTLPDFLEHAKEQNKELKEEIDRVKQS 339 (569)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 3344444444566666777778888899999999999999999999999998888877
No 441
>PRK08476 F0F1 ATP synthase subunit B'; Validated
Probab=41.09 E-value=1.5e+02 Score=27.97 Aligned_cols=25 Identities=4% Similarity=-0.013 Sum_probs=13.7
Q ss_pred HHHHHHHHHHHHHHhcchhHHHHHH
Q 005043 568 YQFYESKMAALIRKNGILEGQLAAA 592 (717)
Q Consensus 568 ~~~~~~~~~~~~~~~~~~~~~~~~~ 592 (717)
.+.++.+|+.-+..-+.++.+++++
T Consensus 36 l~~R~~~I~~~l~~A~~~~~ea~~~ 60 (141)
T PRK08476 36 MDNRNASIKNDLEKVKTNSSDVSEI 60 (141)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455666666665555555554443
No 442
>PRK15422 septal ring assembly protein ZapB; Provisional
Probab=40.86 E-value=1.4e+02 Score=25.31 Aligned_cols=58 Identities=21% Similarity=0.292 Sum_probs=47.7
Q ss_pred HHHHHHHHHHHHHHhcchhHHHHHHHhhHHHHHhhhhhHHhhHHHHHHHHHHHHHHHH
Q 005043 568 YQFYESKMAALIRKNGILEGQLAAALVNREAAEKNFSSVLKSRQEMEKKLADSLKEME 625 (717)
Q Consensus 568 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~ 625 (717)
+.....+|..|..+|..|......|..+|++.+..-.-.-..++.-..+|...+-.|+
T Consensus 20 I~LLqmEieELKekn~~L~~e~~~~~~~r~~L~~en~qLk~E~~~WqerLr~LLGkm~ 77 (79)
T PRK15422 20 ITLLQMEIEELKEKNNSLSQEVQNAQHQREELERENNHLKEQQNGWQERLQALLGRME 77 (79)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 3567788999999999999999999999999998777777777777777777666554
No 443
>PRK08475 F0F1 ATP synthase subunit B; Validated
Probab=40.60 E-value=1.6e+02 Score=28.64 Aligned_cols=65 Identities=9% Similarity=0.136 Sum_probs=40.0
Q ss_pred HHHHHhcchhHHHHHHHhhHHHHHhhhhhH----HhhHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhcc
Q 005043 577 ALIRKNGILEGQLAAALVNREAAEKNFSSV----LKSRQEMEKKLADSLKEMELLKEKLAGLELAQEEANS 643 (717)
Q Consensus 577 ~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~----~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 643 (717)
.+=.|....+++|..|-..+++|++.++.. -+.|++.+.-++++.++.+..++++ .+.|++++++
T Consensus 50 ~l~~R~~~I~~~l~~Ae~~~~ea~~~~~e~e~~L~~Ar~eA~~Ii~~A~~eAe~~~~~i--i~~A~~ea~~ 118 (167)
T PRK08475 50 FYKSRINKISKRLEEIQEKLKESKEKKEDALKKLEEAKEKAELIVETAKKEAYILTQKI--EKQTKDDIEN 118 (167)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHH
Confidence 344566677777777777777777655443 3455556666666666666555543 5566666665
No 444
>PF05911 DUF869: Plant protein of unknown function (DUF869); InterPro: IPR008587 This family consists of a number of sequences found in plants. The function of this family is unknown.
Probab=40.50 E-value=2e+02 Score=35.00 Aligned_cols=71 Identities=28% Similarity=0.272 Sum_probs=39.7
Q ss_pred cchhHHHHHHHhhHHHH--Hh-hhhhHH----hhHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhcccccccccCCccc
Q 005043 583 GILEGQLAAALVNREAA--EK-NFSSVL----KSRQEMEKKLADSLKEMELLKEKLAGLELAQEEANSLSNIVHSDNVRL 655 (717)
Q Consensus 583 ~~~~~~~~~~~~~~~~~--e~-~~~~~~----~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 655 (717)
..||++|+.+-.....+ |. .|+.+| +...++.+..+.+..|++.|+.+|..+|
T Consensus 88 ~~le~~l~e~~~~l~~~~~e~~~l~~~l~~~~~~i~~l~~~~~~~e~~~~~l~~~l~~~e-------------------- 147 (769)
T PF05911_consen 88 SELEAKLAELSKRLAESAAENSALSKALQEKEKLIAELSEEKSQAEAEIEDLMARLESTE-------------------- 147 (769)
T ss_pred HHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH--------------------
Confidence 35666666665444332 22 233333 3334444555566666677777777665
Q ss_pred hhhHHHHHHHHHHHHHHhh
Q 005043 656 EHDVAFLKAVLDDTQKELH 674 (717)
Q Consensus 656 ~~~~~~~~~~~~~~~~~~~ 674 (717)
.|.++||-=+-=.+|||.
T Consensus 148 -ken~~Lkye~~~~~kele 165 (769)
T PF05911_consen 148 -KENSSLKYELHVLSKELE 165 (769)
T ss_pred -HHHHHHHHHHHHHHHHHH
Confidence 456667766666666663
No 445
>PRK13460 F0F1 ATP synthase subunit B; Provisional
Probab=40.19 E-value=1e+02 Score=30.18 Aligned_cols=43 Identities=12% Similarity=0.065 Sum_probs=19.8
Q ss_pred chhHHHHHHHhhHHHHHhhhhhHHhhHHHHHHHHHHHHHHHHH
Q 005043 584 ILEGQLAAALVNREAAEKNFSSVLKSRQEMEKKLADSLKEMEL 626 (717)
Q Consensus 584 ~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~ 626 (717)
.|+.-=+....+.++||+....+-+-..+.+++|+++.+|...
T Consensus 44 ~l~~R~~~I~~~l~~Ae~~~~eA~~~~~e~e~~l~~a~~ea~~ 86 (173)
T PRK13460 44 ALDERASGVQNDINKASELRLEAEALLKDYEARLNSAKDEANA 86 (173)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444444444444444444444444444444
No 446
>PF05483 SCP-1: Synaptonemal complex protein 1 (SCP-1); InterPro: IPR008827 Synaptonemal complex protein 1 (SCP-1) is the major component of the transverse filaments of the synaptonemal complex. Synaptonemal complexes are structures that are formed between homologous chromosomes during meiotic prophase [].; GO: 0007130 synaptonemal complex assembly, 0000795 synaptonemal complex
Probab=40.17 E-value=2.7e+02 Score=33.04 Aligned_cols=73 Identities=27% Similarity=0.338 Sum_probs=49.0
Q ss_pred hHHHHHhhhhhHHhhHHHHHHHHHHHHHHHHH-HHHHHhhhhhhhhhhcccccccccCCccchhhHHHHHHHHHHHHHHh
Q 005043 595 NREAAEKNFSSVLKSRQEMEKKLADSLKEMEL-LKEKLAGLELAQEEANSLSNIVHSDNVRLEHDVAFLKAVLDDTQKEL 673 (717)
Q Consensus 595 ~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~-l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 673 (717)
.....=-+|.+.|..-|+-=+++.+-++-..+ |..|-+.+|..-+..|+ =|-++..|+.+|++.||.|
T Consensus 353 e~qtti~~L~~lL~~Eqqr~~~~ed~lk~l~~eLqkks~eleEmtk~k~~-----------ke~eleeL~~~L~e~qkll 421 (786)
T PF05483_consen 353 ELQTTICNLKELLTTEQQRLKKNEDQLKILTMELQKKSSELEEMTKQKNN-----------KEVELEELKKILAEKQKLL 421 (786)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhhHHHHHHHHHhhh-----------hHHHHHHHHHHHHHHHHHH
Confidence 33333346777766666655666665555444 78888888877766665 2445778999999999877
Q ss_pred hhhcc
Q 005043 674 HSTRG 678 (717)
Q Consensus 674 ~~~~~ 678 (717)
..-.-
T Consensus 422 ~ekk~ 426 (786)
T PF05483_consen 422 DEKKQ 426 (786)
T ss_pred HHHHH
Confidence 66543
No 447
>PF06005 DUF904: Protein of unknown function (DUF904); InterPro: IPR009252 Cell division protein ZapB is a non-essential, abundant cell division factor that is required for proper Z-ring formation. It is recruited early to the divisome by direct interaction with FtsZ, stimulating Z-ring assembly and thereby promoting cell division earlier in the cell cycle. Its recruitment to the Z-ring requires functional FtsA or ZipA.; GO: 0000917 barrier septum formation, 0043093 cytokinesis by binary fission, 0005737 cytoplasm; PDB: 2JEE_A.
Probab=40.06 E-value=2.2e+02 Score=23.77 Aligned_cols=28 Identities=7% Similarity=0.102 Sum_probs=13.5
Q ss_pred HHHHHhhhhhHHhhHHHHHHHHHHHHHH
Q 005043 596 REAAEKNFSSVLKSRQEMEKKLADSLKE 623 (717)
Q Consensus 596 ~~~~e~~~~~~~~~~~~~~~~~~~~~~~ 623 (717)
.++.|.+++.++...+.++.+++...++
T Consensus 6 l~~LE~ki~~aveti~~Lq~e~eeLke~ 33 (72)
T PF06005_consen 6 LEQLEEKIQQAVETIALLQMENEELKEK 33 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444555555555555554444444443
No 448
>PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=39.93 E-value=4.7e+02 Score=28.24 Aligned_cols=117 Identities=16% Similarity=0.113 Sum_probs=66.0
Q ss_pred CCCCcccEEEEEC-CcEEEEEcCCCCCCCCCeEEEEECCCCcEEEeecCCCCCCCCcc--eEEEEECCEEEEEecCCCCC
Q 005043 246 PSPRSNHVAALYD-DKNLLIFGGSSKSKTLNDLYSLDFETMIWTRIKIRGFHPSPRAG--CCGVLCGTKWYIAGGGSRKK 322 (717)
Q Consensus 246 P~~R~~~aa~~~~-~~~lyV~GG~~~~~~~ndv~~yd~~t~~W~~v~~~g~~P~~R~~--~sav~~~~~IyV~GG~~~~~ 322 (717)
|.|-.+|.++... ...+++|+-..+ .-+.+||+.++.=...-. .|..|.+ |++..-+++++..--.+...
T Consensus 2 ~lP~RgH~~a~~p~~~~avafaRRPG----~~~~v~D~~~g~~~~~~~---a~~gRHFyGHg~fs~dG~~LytTEnd~~~ 74 (305)
T PF07433_consen 2 PLPARGHGVAAHPTRPEAVAFARRPG----TFALVFDCRTGQLLQRLW---APPGRHFYGHGVFSPDGRLLYTTENDYET 74 (305)
T ss_pred CCCccccceeeCCCCCeEEEEEeCCC----cEEEEEEcCCCceeeEEc---CCCCCEEecCEEEcCCCCEEEEeccccCC
Confidence 3445577777776 345777775543 358899998887554433 2556654 55555555444333323333
Q ss_pred ccCeEEEEECCCCcEEEeecCCCCCCCCCcceEEEEEEeCCCcEEEEEcCCC
Q 005043 323 RHAETLIFDILKGEWSVAITSPSSSVTSNKGFTLVLVQHKEKDFLVAFGGIK 374 (717)
Q Consensus 323 ~~~dv~~yD~~t~~W~~l~~~p~~~~~~r~g~s~v~v~~~~~~~I~v~GG~~ 374 (717)
...-|-+||.. ....++...+.. ..--|-+.... +++.-++.-||..
T Consensus 75 g~G~IgVyd~~-~~~~ri~E~~s~---GIGPHel~l~p-DG~tLvVANGGI~ 121 (305)
T PF07433_consen 75 GRGVIGVYDAA-RGYRRIGEFPSH---GIGPHELLLMP-DGETLVVANGGIE 121 (305)
T ss_pred CcEEEEEEECc-CCcEEEeEecCC---CcChhhEEEcC-CCCEEEEEcCCCc
Confidence 34567899998 567777654433 22224444443 2224455678874
No 449
>KOG0976 consensus Rho/Rac1-interacting serine/threonine kinase Citron [Signal transduction mechanisms]
Probab=39.92 E-value=1.2e+02 Score=36.34 Aligned_cols=37 Identities=22% Similarity=0.403 Sum_probs=25.1
Q ss_pred cccccCCccchhhHHHHHHHHHHHHHHhhhhccchhh
Q 005043 646 NIVHSDNVRLEHDVAFLKAVLDDTQKELHSTRGVLAG 682 (717)
Q Consensus 646 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 682 (717)
||+-.+|.|--.-++|||--+.+|.-|+.|.|.-||-
T Consensus 486 emlKaen~rqakkiefmkEeiQethldyR~els~lA~ 522 (1265)
T KOG0976|consen 486 EMLKAENERQAKKIEFMKEEIQETHLDYRSELSELAH 522 (1265)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 3455555555555777777777777777777776663
No 450
>PRK09343 prefoldin subunit beta; Provisional
Probab=39.87 E-value=1.9e+02 Score=26.54 Aligned_cols=43 Identities=21% Similarity=0.288 Sum_probs=29.9
Q ss_pred HHHHHHHHHhcchhHHHHHHHhhHHHHHhhhhhHHhhHHHHHH
Q 005043 573 SKMAALIRKNGILEGQLAAALVNREAAEKNFSSVLKSRQEMEK 615 (717)
Q Consensus 573 ~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~ 615 (717)
.++..++.++..+..|+..+...+.+.|..+..+-....++++
T Consensus 7 ~~~q~~~~~~q~lq~~l~~~~~q~~~le~q~~e~~~~~~EL~~ 49 (121)
T PRK09343 7 PEVQAQLAQLQQLQQQLERLLQQKSQIDLELREINKALEELEK 49 (121)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 4566677777777777777777777777777766555555554
No 451
>PF06160 EzrA: Septation ring formation regulator, EzrA ; InterPro: IPR010379 During the bacterial cell cycle, the tubulin-like cell-division protein FtsZ polymerises into a ring structure that establishes the location of the nascent division site. EzrA modulates the frequency and position of FtsZ ring formation [].; GO: 0000921 septin ring assembly, 0005940 septin ring, 0016021 integral to membrane
Probab=39.84 E-value=91 Score=36.63 Aligned_cols=59 Identities=24% Similarity=0.341 Sum_probs=40.9
Q ss_pred HHHhhhhhHHhhHHHHHHHHHHHHHHHHHHHHHHhhhhhhh----hhhcccccccccCCccch
Q 005043 598 AAEKNFSSVLKSRQEMEKKLADSLKEMELLKEKLAGLELAQ----EEANSLSNIVHSDNVRLE 656 (717)
Q Consensus 598 ~~e~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~ 656 (717)
+-..--|.+...-+++.+.|..+.++++.+++.|+++...+ +....+.+.+|.--.++|
T Consensus 369 ~~~~~yS~i~~~l~~~~~~l~~ie~~q~~~~~~l~~L~~dE~~Ar~~l~~~~~~l~~ikR~le 431 (560)
T PF06160_consen 369 EQQVPYSEIQEELEEIEEQLEEIEEEQEEINESLQSLRKDEKEAREKLQKLKQKLREIKRRLE 431 (560)
T ss_pred cCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33345567777788888888888889888898888886544 444455555555555555
No 452
>PF05622 HOOK: HOOK protein; InterPro: IPR008636 This family consists of several HOOK1, 2 and 3 proteins from different eukaryotic organisms. The different members of the Homo sapiens gene family are HOOK1, HOOK2 and HOOK3. Different domains have been identified in the three Homo sapiens HOOK proteins, and it was demonstrated that the highly conserved NH2-domain mediates attachment to microtubules, whereas the central coiled-coil motif mediates homodimerisation and the more divergent C-terminal domains are involved in binding to specific organelles (organelle-binding domains). It has been demonstrated that endogenous HOOK3 binds to Golgi membranes [], whereas both HOOK1 and HOOK2 are localised to discrete but unidentified cellular structures. In mice the Hook1 gene is predominantly expressed in the testis. Hook1 function is necessary for the correct positioning of microtubular structures within the haploid germ cell. Disruption of Hook1 function in mice causes abnormal sperm head shape and fragile attachment of the flagellum to the sperm head [].; GO: 0008017 microtubule binding, 0000226 microtubule cytoskeleton organization, 0005737 cytoplasm; PDB: 1WIX_A.
Probab=39.65 E-value=9.7 Score=46.02 Aligned_cols=66 Identities=24% Similarity=0.257 Sum_probs=0.0
Q ss_pred cchhHHHHHHHhhHHHHHhhhhhHHhhHHHHHHHHHHHHHHHHHHHHHH-------hhhhhhhhhhcccccccc
Q 005043 583 GILEGQLAAALVNREAAEKNFSSVLKSRQEMEKKLADSLKEMELLKEKL-------AGLELAQEEANSLSNIVH 649 (717)
Q Consensus 583 ~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-------~~~~~~~~~~~~~~~~~~ 649 (717)
..|.++|+..-...+.++|--+.|-+.|++++. +++..+.++.|+|+. +.+|.....++.++.-+|
T Consensus 294 ~~LrDElD~lR~~a~r~~klE~~ve~YKkKLed-~~~lk~qvk~Lee~N~~l~e~~~~LEeel~~~~~~~~qle 366 (713)
T PF05622_consen 294 RALRDELDELREKADRADKLENEVEKYKKKLED-LEDLKRQVKELEEDNAVLLETKAMLEEELKKARALKSQLE 366 (713)
T ss_dssp --------------------------------------------------------------------------
T ss_pred HHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Confidence 344444544444444555555555555555443 455555555555533 344444445555444443
No 453
>PF05557 MAD: Mitotic checkpoint protein; InterPro: IPR008672 This family consists of several eukaryotic mitotic checkpoint (Mitotic arrest deficient or MAD) proteins. The mitotic spindle checkpoint monitors proper attachment of the bipolar spindle to the kinetochores of aligned sister chromatids and causes a cell cycle arrest in prometaphase when failures occur. Multiple components of the mitotic spindle checkpoint have been identified in Saccharomyces cerevisiae and higher eukaryotes. In Saccharomyces cerevisiae, the existence of a Mad1-dependent complex containing Mad2, Mad3, Bub3 and Cdc20 has been demonstrated [].; PDB: 1GO4_F 4DZO_A.
Probab=39.61 E-value=9.7 Score=46.08 Aligned_cols=54 Identities=24% Similarity=0.327 Sum_probs=0.0
Q ss_pred cchhhHHHHHHHHHHHHHHhhhhccc---hhhccccceeeEEEeehhhhhhhhhccc
Q 005043 654 RLEHDVAFLKAVLDDTQKELHSTRGV---LAGERARAFQLQVEVFHLKQRLQSLENR 707 (717)
Q Consensus 654 ~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 707 (717)
.|+.++.=|+.-|+..|++++..-.- |-..++...+...+|-+|+..|...|..
T Consensus 189 ~l~~e~~~l~~~le~~~~~~~e~e~~~~~L~~~q~~~~e~e~~i~~Le~el~~~~~~ 245 (722)
T PF05557_consen 189 SLESELEELKEQLEELQSELQEAEQQLQELQASQASLAEAEQKIKELEAELKDQESD 245 (722)
T ss_dssp ---------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhHhhH
Confidence 35566666666666666655432222 2122222333456677777666665543
No 454
>PRK10929 putative mechanosensitive channel protein; Provisional
Probab=39.59 E-value=54 Score=41.49 Aligned_cols=110 Identities=13% Similarity=0.141 Sum_probs=62.5
Q ss_pred HHHhhHHHHHhhhhhHHhh---HHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhcccccccccCCccchhhHHHHHHHHH
Q 005043 591 AALVNREAAEKNFSSVLKS---RQEMEKKLADSLKEMELLKEKLAGLELAQEEANSLSNIVHSDNVRLEHDVAFLKAVLD 667 (717)
Q Consensus 591 ~~~~~~~~~e~~~~~~~~~---~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 667 (717)
++.+..+++-..|..+=+. -+++++.+++.-++.+.++++++.++ ++....+.|+ ..-.||..++--.+-|.
T Consensus 45 ~~~~~l~~tl~~l~~~~~~~~~~~~~~~~i~~ap~~~~~~~~~l~~~~--~~~~~~~~~~---s~~~Leq~l~~~~~~L~ 119 (1109)
T PRK10929 45 EIVEALQSALNWLEERKGSLERAKQYQQVIDNFPKLSAELRQQLNNER--DEPRSVPPNM---STDALEQEILQVSSQLL 119 (1109)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhhh--cccccccccC---CHHHHHHHHHHHHHHHH
Confidence 3334444444444444333 24567788888888888998888633 2222111222 22567777776666666
Q ss_pred HHHHHhhhhccch----hhccccceeeEEEeehhhhhhhhhcccCC
Q 005043 668 DTQKELHSTRGVL----AGERARAFQLQVEVFHLKQRLQSLENRAP 709 (717)
Q Consensus 668 ~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 709 (717)
|.|++|.+-=.-+ ..=++.. |-. ...++|||.++++-.
T Consensus 120 ~~q~~l~~~~~~~~~~~~~l~~~p---q~~-~~~~~~l~~i~~~L~ 161 (1109)
T PRK10929 120 EKSRQAQQEQDRAREISDSLSQLP---QQQ-TEARRQLNEIERRLQ 161 (1109)
T ss_pred HHHHHHHHHhhhhHHHHHHHhhch---hhH-HHHHHHHHHHHHHHh
Confidence 7776665432222 2222333 222 789999999997643
No 455
>TIGR00998 8a0101 efflux pump membrane protein (multidrug resistance protein A).
Probab=39.37 E-value=1.2e+02 Score=32.58 Aligned_cols=21 Identities=19% Similarity=0.037 Sum_probs=11.9
Q ss_pred chhhHHHHHHHHHHHHHHhhh
Q 005043 655 LEHDVAFLKAVLDDTQKELHS 675 (717)
Q Consensus 655 ~~~~~~~~~~~~~~~~~~~~~ 675 (717)
-+.+++-+++=++..|..|..
T Consensus 184 ~~~~i~~~~~~l~~a~~~l~~ 204 (334)
T TIGR00998 184 KQPAVQEAKERLKTAWLALKR 204 (334)
T ss_pred hhHHHHHHHHHHHHHHHHhhC
Confidence 344566666666666555543
No 456
>cd07665 BAR_SNX1 The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexin 1. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. SNX1 is a component of the retromer complex, a membrane coat multimeric complex required for endosomal retrieval of lysosomal hydrolase receptors to the Golgi. The retromer consists of a cargo-recognition subcomplex and a subcomplex formed by a dimer of sorting nexins (SNX1 and/or SNX2), which ensures effcient cargo sorting by facilitating proper membrane localization
Probab=39.20 E-value=52 Score=34.06 Aligned_cols=55 Identities=20% Similarity=0.460 Sum_probs=38.4
Q ss_pred HHHHHHHHHHHHHHHHHhhhhhhhhhhcccccccccCCccchhh---------HHHHHHHHHHHHHHh
Q 005043 615 KKLADSLKEMELLKEKLAGLELAQEEANSLSNIVHSDNVRLEHD---------VAFLKAVLDDTQKEL 673 (717)
Q Consensus 615 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~ 673 (717)
.|+..+..|+..++.|+..+ +.+...+|..|-.+=.|.|.| ..||+.-+ ++|||+
T Consensus 159 dK~~~a~~Ev~e~e~k~~~a---~~~fe~is~~ik~El~rFe~er~~Dfk~~v~~fles~i-e~qke~ 222 (234)
T cd07665 159 DKLQQAKDEIAEWESRVTQY---ERDFERISATVRKEVIRFEKEKSKDFKNHIIKYLETLL-HSQQQL 222 (234)
T ss_pred hHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHH
Confidence 57777777888787776644 457778888888888888876 34554444 477776
No 457
>PF03148 Tektin: Tektin family; InterPro: IPR000435 Tektin heteropolymers form unique protofilaments of flagellar microtubules []. The proteins are predicted to form extended rods composed of 2 alpha- helical segments (~180 residues long) capable of forming coiled coils, interrupted by non-helical linkers []. The 2 segments are similar in sequence, indicating a gene duplication event. Along each tektin rod, cysteine residues occur with a periodicity of ~8nm, coincident with the axial repeat of tubulin dimers in microtubules []. It is proposed that the assembly of tektin heteropolymers produces filaments with repeats of 8, 16, 24, 32, 40, 48 and 96nm, generating the basis for the complex spatial arrangements of axonemal components [].; GO: 0000226 microtubule cytoskeleton organization, 0005874 microtubule
Probab=39.13 E-value=1.1e+02 Score=34.25 Aligned_cols=97 Identities=24% Similarity=0.283 Sum_probs=59.9
Q ss_pred HHHHHHHHHHHHhcchhHHHHHHHhhHHHHHhhhhhHHhhHHHHHHHH------------------------HHHHHHHH
Q 005043 570 FYESKMAALIRKNGILEGQLAAALVNREAAEKNFSSVLKSRQEMEKKL------------------------ADSLKEME 625 (717)
Q Consensus 570 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~------------------------~~~~~~~~ 625 (717)
.+..+|....+-...||-||...+.+...+|+++..+-++....+.-| .....|+.
T Consensus 248 al~~Ri~et~~ak~~Le~ql~~~~~ei~~~e~~i~~L~~ai~~k~~~lkvaqTRL~~R~~RP~vElcrD~~q~~L~~Ev~ 327 (384)
T PF03148_consen 248 ALRKRIHETQEAKNELEWQLKKTLQEIAEMEKNIEDLEKAIRDKEGPLKVAQTRLENRTQRPNVELCRDPPQYGLIEEVK 327 (384)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHhhHhcCCchHHHHhhHHHHHHHHHH
Confidence 566666667777777888888888777777776666555554444332 12235777
Q ss_pred HHHHHHhhhhhhhhhhcccccccccCCccchhhHHHHHHHH
Q 005043 626 LLKEKLAGLELAQEEANSLSNIVHSDNVRLEHDVAFLKAVL 666 (717)
Q Consensus 626 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 666 (717)
.|++-++.|...-.++...=+-.+..-.+||+|++.--..|
T Consensus 328 ~l~~~i~~L~~~L~~a~~~l~~L~~~~~~Le~di~~K~~sL 368 (384)
T PF03148_consen 328 ELRESIEALQEKLDEAEASLQKLERTRLRLEEDIAVKNNSL 368 (384)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 77777776665555554444444555567777776654433
No 458
>TIGR00570 cdk7 CDK-activating kinase assembly factor MAT1. All proteins in this family for which functions are known are cyclin dependent protein kinases that are components of TFIIH, a complex that is involved in nucleotide excision repair and transcription initiation. Also known as MAT1 (menage a trois 1). This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=38.99 E-value=1.4e+02 Score=32.15 Aligned_cols=37 Identities=19% Similarity=0.128 Sum_probs=31.3
Q ss_pred HHHHHHHHHHHHHHhcchhHHHHHHHhhHHHHHhhhh
Q 005043 568 YQFYESKMAALIRKNGILEGQLAAALVNREAAEKNFS 604 (717)
Q Consensus 568 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~ 604 (717)
.+.|+..-++.|.+|-..+.|-.+.++.+.++|+.+.
T Consensus 122 l~~y~~~n~~~I~~n~~~~~~e~~~~~~~~~~E~~~~ 158 (309)
T TIGR00570 122 IETYQKENKDVIQKNKEKSTREQEELEEALEFEKEEE 158 (309)
T ss_pred HHHHHHHhHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Confidence 3688999999999999999999999888888887554
No 459
>cd07643 I-BAR_IMD_MIM Inverse (I)-BAR, also known as the IRSp53/MIM homology Domain (IMD), of Missing In Metastasis. The IMD domain, also called Inverse-Bin/Amphiphysin/Rvs (I-BAR) domain, is a dimerization and lipid-binding module that bends membranes and induces membrane protrusions. Members of this subfamily include missing in metastasis (MIM) or metastasis suppressor 1 (MTSS1), metastasis suppressor 1-like (MTSSL) or ABBA (Actin-Bundling protein with BAIAP2 homology), and similar proteins. They contain an N-terminal IMD and a WASP homology 2 (WH2) actin-binding motif at the C-terminus. MIM was originally identified as a missing transcript from metastatic bladder and prostate cancer cells. It is a scaffold protein that functions in a signaling pathway between the PDGF receptor, Src kinases, and actin assembly. It may also function as a cofactor of the Sonic hedgehog (Shh) transcriptional pathway and may participate in tumor development and progression via this pathway. ABBA regulate
Probab=38.94 E-value=96 Score=31.81 Aligned_cols=114 Identities=27% Similarity=0.301 Sum_probs=67.8
Q ss_pred chhHHHHHHHhhHHHHHhhhh--------h-HHhhHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhcccccccccCCcc
Q 005043 584 ILEGQLAAALVNREAAEKNFS--------S-VLKSRQEMEKKLADSLKEMELLKEKLAGLELAQEEANSLSNIVHSDNVR 654 (717)
Q Consensus 584 ~~~~~~~~~~~~~~~~e~~~~--------~-~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 654 (717)
.|..+|.+-|..|-+..|+-. . .=|-|++++|+..+++|=...-|.-- --.|+..++
T Consensus 93 ~L~~~lI~pLe~k~E~wkk~~~~ldKd~~k~~kk~R~elKk~~~dt~klqkk~rKg~---~~~~~~lds----------- 158 (231)
T cd07643 93 ALMDCLVNPLQEKIEEWKKVANQLDKDHAKEYKKARQEIKKKSSDTIRLQKKARKGK---GDLQPQLDS----------- 158 (231)
T ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhccC---CccchHHHH-----------
Confidence 455555666655544443222 1 23557777777777666443333211 112222222
Q ss_pred chhhHHHHHHHHHHHHHHhhhhccchhhccccc-e---eeE----------EEeehhhhhhhhhcccCCCCCC
Q 005043 655 LEHDVAFLKAVLDDTQKELHSTRGVLAGERARA-F---QLQ----------VEVFHLKQRLQSLENRAPTPRK 713 (717)
Q Consensus 655 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~---~~~----------~~~~~~~~~~~~~~~~~~~~~~ 713 (717)
-.+||---...||+|+| .+-|.+|--||.|= | +|| -||-||.+-++.|-.-+.-|.+
T Consensus 159 a~~dvn~k~~~lEe~ek--~alR~aLiEER~Rfc~Fvs~l~pVl~~e~~ml~E~~hl~~~~~~l~~~t~~p~~ 229 (231)
T cd07643 159 AMQDVNDKYLLLEETEK--KAVRNALIEERGRFCTFVSFLKPVLDEEISMLGEVTHLQTIMEDLASLTADPHK 229 (231)
T ss_pred HHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhhHHHHHHHHHHHHHHhcCccc
Confidence 44788888888898877 57899999999993 1 122 2888998888877655555543
No 460
>PF08581 Tup_N: Tup N-terminal; InterPro: IPR013890 The N-terminal region of the Tup protein has been shown to interact with the Ssn6 transcriptional co-repressor []. ; PDB: 3VP9_B 3VP8_B.
Probab=38.88 E-value=1.4e+02 Score=25.55 Aligned_cols=55 Identities=13% Similarity=0.174 Sum_probs=42.4
Q ss_pred HHHHHhcchhHHHHHHHhhHHHHHhhhhhHHhhHHHHHHHHHHHHHHHHHHHHHH
Q 005043 577 ALIRKNGILEGQLAAALVNREAAEKNFSSVLKSRQEMEKKLADSLKEMELLKEKL 631 (717)
Q Consensus 577 ~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 631 (717)
++-..++.+..++...-..++..|.++++-+..-|.+..++-+.......+|++-
T Consensus 8 ~ir~Ef~~~~~e~~~~k~~~~e~e~ki~~Qi~Em~~ir~~v~eLE~~h~kmK~~Y 62 (79)
T PF08581_consen 8 AIRQEFENLSQEANSYKHQKDEYEHKINSQIQEMQQIRQKVYELEQAHRKMKQQY 62 (79)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445566666667777778888888888888888888888888888777777765
No 461
>PF05278 PEARLI-4: Arabidopsis phospholipase-like protein (PEARLI 4); InterPro: IPR007942 This family contains several phospholipase-like proteins from Arabidopsis thaliana and other members of the Streptophyta which are homologous to PEARLI 4.
Probab=38.76 E-value=98 Score=32.59 Aligned_cols=51 Identities=25% Similarity=0.313 Sum_probs=30.8
Q ss_pred hhHHHHHHHhhHHHHHhhhhhHHhhHHHHHHHHHHHHHHHHHHHHHHhhhhh
Q 005043 585 LEGQLAAALVNREAAEKNFSSVLKSRQEMEKKLADSLKEMELLKEKLAGLEL 636 (717)
Q Consensus 585 ~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 636 (717)
|..+|..++..++-. +.-..+...++..+++|....+|+|.++|+|+..|.
T Consensus 171 LR~~L~Ei~Ea~e~~-~~~~~~e~eke~~~r~l~~~~~ELe~~~EeL~~~Ek 221 (269)
T PF05278_consen 171 LRSKLEEILEAKEIY-DQHETREEEKEEKDRKLELKKEELEELEEELKQKEK 221 (269)
T ss_pred HHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444555544333222 223334556777888888888888888877776653
No 462
>PRK10869 recombination and repair protein; Provisional
Probab=38.75 E-value=1.6e+02 Score=34.47 Aligned_cols=89 Identities=9% Similarity=0.006 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHhcchhHHHHHHHhhHHHHHhhhhhHHhh---HHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhccc
Q 005043 568 YQFYESKMAALIRKNGILEGQLAAALVNREAAEKNFSSVLKS---RQEMEKKLADSLKEMELLKEKLAGLELAQEEANSL 644 (717)
Q Consensus 568 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~---~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 644 (717)
.+.+=..+..|.||+| ..+++.++-++++++.|+.+... .++++++++.+.+++..+-++|...-
T Consensus 301 ie~Rl~~l~~L~rKyg---~~~~~~~~~~~~l~~eL~~L~~~e~~l~~Le~e~~~l~~~l~~~A~~LS~~R--------- 368 (553)
T PRK10869 301 LEQRLSKQISLARKHH---VSPEELPQHHQQLLEEQQQLDDQEDDLETLALAVEKHHQQALETAQKLHQSR--------- 368 (553)
T ss_pred HHHHHHHHHHHHHHhC---CCHHHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------
Q ss_pred ccccccCCccchhhHHHHHHHHHHHHHHhhhhccchhhcccc
Q 005043 645 SNIVHSDNVRLEHDVAFLKAVLDDTQKELHSTRGVLAGERAR 686 (717)
Q Consensus 645 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 686 (717)
|++..+..+++...=.-|..+.+|
T Consensus 369 ------------------~~aA~~l~~~v~~~L~~L~m~~a~ 392 (553)
T PRK10869 369 ------------------QRYAKELAQLITESMHELSMPHGK 392 (553)
T ss_pred ------------------HHHHHHHHHHHHHHHHHcCCCCcE
No 463
>PF09304 Cortex-I_coil: Cortexillin I, coiled coil; InterPro: IPR015383 This domain is predominantly found in the actin-bundling protein cortexillin I from Dictyostelium discoideum (Slime mold). The domain has a structure consisting of an 18-heptad-repeat alpha-helical coiled-coil, and is a prerequisite for the assembly of Cortexillin I []. ; PDB: 1D7M_A.
Probab=38.75 E-value=46 Score=29.88 Aligned_cols=68 Identities=18% Similarity=0.341 Sum_probs=34.1
Q ss_pred hhHHHHHhhhhhHHhhHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhcccccccccCCccchhhHHHHHHHHHHHHHHh
Q 005043 594 VNREAAEKNFSSVLKSRQEMEKKLADSLKEMELLKEKLAGLELAQEEANSLSNIVHSDNVRLEHDVAFLKAVLDDTQKEL 673 (717)
Q Consensus 594 ~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 673 (717)
+++.+.+..|+..-.+.+..+---...-++.+.|+.-+..+ -..|--+.|.++=|.|=++|.-+.|
T Consensus 9 as~~el~n~La~Le~slE~~K~S~~eL~kqkd~L~~~l~~L--------------~~q~~s~~qr~~eLqaki~ea~~~l 74 (107)
T PF09304_consen 9 ASQNELQNRLASLERSLEDEKTSQGELAKQKDQLRNALQSL--------------QAQNASRNQRIAELQAKIDEARRNL 74 (107)
T ss_dssp -----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHhhHHHHHHhHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444444444444444444433333344444444444333 3344446678888888888877777
Q ss_pred hh
Q 005043 674 HS 675 (717)
Q Consensus 674 ~~ 675 (717)
.+
T Consensus 75 e~ 76 (107)
T PF09304_consen 75 ED 76 (107)
T ss_dssp HH
T ss_pred HH
Confidence 66
No 464
>PRK10865 protein disaggregation chaperone; Provisional
Probab=38.70 E-value=1.1e+02 Score=38.01 Aligned_cols=19 Identities=21% Similarity=0.401 Sum_probs=8.0
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 005043 612 EMEKKLADSLKEMELLKEK 630 (717)
Q Consensus 612 ~~~~~~~~~~~~~~~l~~~ 630 (717)
+++++++...+|+..|+++
T Consensus 443 ~l~~~l~~lq~e~~~L~eq 461 (857)
T PRK10865 443 MLNEELSDKERQYSELEEE 461 (857)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444443
No 465
>PF03961 DUF342: Protein of unknown function (DUF342); InterPro: IPR005646 This family of bacterial proteins has no known function. The proteins are in the region of 500-600 amino acid residues in length.
Probab=38.52 E-value=1.1e+02 Score=34.77 Aligned_cols=33 Identities=21% Similarity=0.396 Sum_probs=18.0
Q ss_pred hhhhHHhhHHHHHHHHHHHHHHHHHHHHHHhhh
Q 005043 602 NFSSVLKSRQEMEKKLADSLKEMELLKEKLAGL 634 (717)
Q Consensus 602 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 634 (717)
.+..+.+.+.++.++++...++.+.|++.+...
T Consensus 376 ~~~~l~~~~~~l~~~~~~l~~~~~~l~~~l~~~ 408 (451)
T PF03961_consen 376 QLKKLKEKKKELKEELKELKEELKELKEELERS 408 (451)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 444455555555555555555555555555544
No 466
>PRK13461 F0F1 ATP synthase subunit B; Provisional
Probab=38.47 E-value=1.8e+02 Score=27.80 Aligned_cols=36 Identities=14% Similarity=0.129 Sum_probs=14.7
Q ss_pred HHHHhhHHHHHhhhhhHHhhHHHHHHHHHHHHHHHH
Q 005043 590 AAALVNREAAEKNFSSVLKSRQEMEKKLADSLKEME 625 (717)
Q Consensus 590 ~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~ 625 (717)
.....+.++||+....+.+.+++.+++|+++.+|..
T Consensus 39 ~~I~~~l~~A~~~~~eA~~~~~e~~~~l~~a~~ea~ 74 (159)
T PRK13461 39 SEIDNKIEKADEDQKKARELKLKNERELKNAKEEGK 74 (159)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333444444444444444444444444444333
No 467
>COG4026 Uncharacterized protein containing TOPRIM domain, potential nuclease [General function prediction only]
Probab=38.35 E-value=74 Score=32.29 Aligned_cols=58 Identities=14% Similarity=0.113 Sum_probs=44.2
Q ss_pred HHHHHHHHhcchhHHHHHHHhhHHHHHhhhhhHHhhHHHHHHHHHHHHHHHHHHHHHH
Q 005043 574 KMAALIRKNGILEGQLAAALVNREAAEKNFSSVLKSRQEMEKKLADSLKEMELLKEKL 631 (717)
Q Consensus 574 ~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 631 (717)
+-..|+.+++.||+.+.+.....+..|+.+|..-+.+..+..+..+..+..++|.+++
T Consensus 150 EkeeL~~eleele~e~ee~~erlk~le~E~s~LeE~~~~l~~ev~~L~~r~~ELe~~~ 207 (290)
T COG4026 150 EKEELLKELEELEAEYEEVQERLKRLEVENSRLEEMLKKLPGEVYDLKKRWDELEPGV 207 (290)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchhHHHHHHHHHHHhcccc
Confidence 3356788888888888888888888888888887777777777777777666666654
No 468
>PF12128 DUF3584: Protein of unknown function (DUF3584); InterPro: IPR021979 This family consist of uncharacterised bacterial proteins.
Probab=38.16 E-value=70 Score=41.21 Aligned_cols=10 Identities=10% Similarity=0.238 Sum_probs=6.0
Q ss_pred ccCCCCcccc
Q 005043 505 NQSDLGAQTS 514 (717)
Q Consensus 505 ~~~~~~~~~~ 514 (717)
+.+.++|.-+
T Consensus 546 ~~~~p~We~t 555 (1201)
T PF12128_consen 546 RKNKPGWEQT 555 (1201)
T ss_pred HhCCCcHHHH
Confidence 5556666644
No 469
>COG0013 AlaS Alanyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=38.05 E-value=82 Score=38.67 Aligned_cols=124 Identities=29% Similarity=0.313 Sum_probs=68.9
Q ss_pred HHHHHHHHHHhcchhHHHHH-HHhhHHHHHhhhhhHHhhHHHHHHHHHHHHHHHHHHHHHHhhhhh--hhhhhccccccc
Q 005043 572 ESKMAALIRKNGILEGQLAA-ALVNREAAEKNFSSVLKSRQEMEKKLADSLKEMELLKEKLAGLEL--AQEEANSLSNIV 648 (717)
Q Consensus 572 ~~~~~~~~~~~~~~~~~~~~-~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~--~~~~~~~~~~~~ 648 (717)
|.-+++=+||-+..-|+=|- .+...++.=|+++++||...+.-.|+...+.|...|+++|+.++. |.++..+|...+
T Consensus 688 e~~i~aGVrRIeavtG~~a~~~~~~~~~~l~~~a~~lk~~~~~~~kv~~l~~~~k~lekel~~lk~~~~~~~~~~~~~~~ 767 (879)
T COG0013 688 EEGIAAGVRRIEAVTGEAALEYLQEQEDLLKEIASLLKVPPELLPKVERLLEELKELEKELERLKKKLAAAELADLLSNA 767 (879)
T ss_pred ecccccCeEEEEEEcCHHHHHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcc
Confidence 34455666666655444332 233444444555666655444444555555555555555555433 333333322221
Q ss_pred cc---CCc-----cc-hhhHHHHHHHHHHHHHHhhhhccchhhccccceeeEEEee
Q 005043 649 HS---DNV-----RL-EHDVAFLKAVLDDTQKELHSTRGVLAGERARAFQLQVEVF 695 (717)
Q Consensus 649 ~~---~~~-----~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 695 (717)
.. .++ ++ +.|-.=|+...|+.-+++.+.=-||++.--=-+.+.+-|.
T Consensus 768 ~~~~i~g~~~~~~~~~~~d~~~Lr~~a~~lk~k~~~~vivl~~~~~~Kv~~~~~v~ 823 (879)
T COG0013 768 KAEEIGGVKVLAKEVDGADMKELREIADDLKKKLGSAVIVLASVADGKVSLVVAVS 823 (879)
T ss_pred cceeeCCEEEEEEEecCCCHHHHHHHHHHHHhhcCCcEEEEEEecCCeEEEEEEec
Confidence 11 122 22 3788999999999999999998888875433556666664
No 470
>PRK01156 chromosome segregation protein; Provisional
Probab=38.04 E-value=1.4e+02 Score=37.25 Aligned_cols=28 Identities=7% Similarity=0.125 Sum_probs=14.2
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhhhhhhh
Q 005043 614 EKKLADSLKEMELLKEKLAGLELAQEEA 641 (717)
Q Consensus 614 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 641 (717)
+.++.++.++++.|+++++.++...++.
T Consensus 642 ~~~i~~~~~~i~~l~~~i~~l~~~~~~~ 669 (895)
T PRK01156 642 KILIEKLRGKIDNYKKQIAEIDSIIPDL 669 (895)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhhh
Confidence 4444455555555555555555444443
No 471
>PF04380 BMFP: Membrane fusogenic activity; InterPro: IPR007475 BMFP consists of two structural domains, a coiled-coil C-terminal domain via which the protein self-associates as a trimer, and an N-terminal domain disordered at neutral pH but adopting an amphipathic alpha-helical structure in the presence of phospholipid vesicles, high ionic strength, acidic pH or SDS. BMFP interacts with phospholipid vesicles though the predicted amphipathic alpha-helix induced in the N-terminal half of the protein and promotes aggregation and fusion of vesicles in vitro.
Probab=37.90 E-value=2.4e+02 Score=23.88 Aligned_cols=29 Identities=34% Similarity=0.568 Sum_probs=19.6
Q ss_pred hhHHHHHHH---HHHHHHHHHHHHHHHhhhhh
Q 005043 608 KSRQEMEKK---LADSLKEMELLKEKLAGLEL 636 (717)
Q Consensus 608 ~~~~~~~~~---~~~~~~~~~~l~~~~~~~~~ 636 (717)
=+|++.|.. |+.+-+.++.|..||+.+|.
T Consensus 47 VtREEFd~q~~~L~~~r~kl~~LEarl~~LE~ 78 (79)
T PF04380_consen 47 VTREEFDAQKAVLARTREKLEALEARLAALEA 78 (79)
T ss_pred CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 356666644 45556677778888888873
No 472
>PF13815 Dzip-like_N: Iguana/Dzip1-like DAZ-interacting protein N-terminal
Probab=37.88 E-value=1.4e+02 Score=27.34 Aligned_cols=62 Identities=16% Similarity=0.263 Sum_probs=37.9
Q ss_pred chHHHHHHHHHHHHHHHhcchh-HHHHHHHhhHHHHHhhhhhHHhhHHHHHHHHHHHHHHHHHHHHHH
Q 005043 565 SSIYQFYESKMAALIRKNGILE-GQLAAALVNREAAEKNFSSVLKSRQEMEKKLADSLKEMELLKEKL 631 (717)
Q Consensus 565 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 631 (717)
..+..++ +++++...+-.-- .+|. ...+++++.+..+.+..++++++++...+|+..||+.+
T Consensus 55 p~~~klf--rLaQl~ieYLl~~q~~L~---~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~k~lk~E~ 117 (118)
T PF13815_consen 55 PNFLKLF--RLAQLSIEYLLHCQEYLS---SQLEQLEERLQELQQEIEKLKQKLKKQKEEIKKLKKES 117 (118)
T ss_pred HHHHHHH--HHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 3344443 4555555543221 1122 23566777777778888888888888888888877653
No 473
>PRK03947 prefoldin subunit alpha; Reviewed
Probab=37.86 E-value=2.3e+02 Score=26.49 Aligned_cols=34 Identities=18% Similarity=0.218 Sum_probs=22.9
Q ss_pred HHHHHHHHHHHHHHhcchhHHHHHHHhhHHHHHh
Q 005043 568 YQFYESKMAALIRKNGILEGQLAAALVNREAAEK 601 (717)
Q Consensus 568 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~ 601 (717)
++.|...+..+...-..|+.++......++..+.
T Consensus 15 ~~~l~~~~~~l~~~~~~l~~~~~e~~~~~e~l~~ 48 (140)
T PRK03947 15 LQALQAQIEALQQQLEELQASINELDTAKETLEE 48 (140)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4567777777777777777777766666655543
No 474
>PF05700 BCAS2: Breast carcinoma amplified sequence 2 (BCAS2); InterPro: IPR008409 This family consists of several eukaryotic sequences of unknown function. The mammalian members of this family are annotated as breast carcinoma amplified sequence 2 (BCAS2) proteins []. BCAS2 is a putative spliceosome associated protein [].
Probab=37.72 E-value=1.7e+02 Score=29.93 Aligned_cols=81 Identities=21% Similarity=0.244 Sum_probs=48.7
Q ss_pred HHHHHhcchhHHHHHHHhhHHHHHhhhhhHHhhHHHHHHHHHHHHHHHH----HHHHHHhhhhhhhhhhcccccccccCC
Q 005043 577 ALIRKNGILEGQLAAALVNREAAEKNFSSVLKSRQEMEKKLADSLKEME----LLKEKLAGLELAQEEANSLSNIVHSDN 652 (717)
Q Consensus 577 ~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~----~l~~~~~~~~~~~~~~~~~~~~~~~~~ 652 (717)
+-++.|..||+.+...........+.+..|-+.|...-...+..++.+| .+--|...+|. .+
T Consensus 133 aW~~~n~~Le~~~~~le~~l~~~k~~ie~vN~~RK~~Q~~~~~~L~~Le~~W~~~v~kn~eie~--------------a~ 198 (221)
T PF05700_consen 133 AWLIHNEQLEAMLKRLEKELAKLKKEIEEVNRERKRRQEEAGEELRYLEQRWKELVSKNLEIEV--------------AC 198 (221)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH--------------HH
Confidence 3455566788887777777777777777777766554444444333333 24444444443 34
Q ss_pred ccchhhHHHHHHHHHHHHH
Q 005043 653 VRLEHDVAFLKAVLDDTQK 671 (717)
Q Consensus 653 ~~~~~~~~~~~~~~~~~~~ 671 (717)
+.||.+|.-||+-..+.++
T Consensus 199 ~~Le~ei~~l~~~~~~~~~ 217 (221)
T PF05700_consen 199 EELEQEIEQLKRKAAELKE 217 (221)
T ss_pred HHHHHHHHHHHHHHHHHhc
Confidence 5677777777766554443
No 475
>PRK15178 Vi polysaccharide export inner membrane protein VexD; Provisional
Probab=37.70 E-value=1.6e+02 Score=33.43 Aligned_cols=59 Identities=17% Similarity=0.060 Sum_probs=41.7
Q ss_pred HHHHHHHhcchhHHHHHHHhhHHHHHhhhhhHHhhHHHHHHHHHHHHHHHHHHHHHHhh
Q 005043 575 MAALIRKNGILEGQLAAALVNREAAEKNFSSVLKSRQEMEKKLADSLKEMELLKEKLAG 633 (717)
Q Consensus 575 ~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 633 (717)
.+..+.--..||+||+++.+.+.++...++.=--....++.+++.+.++++.+|.|+++
T Consensus 281 a~~~~~lI~~Le~qLa~~~aeL~~L~~~~~p~sPqV~~l~~rI~aLe~QIa~er~kl~~ 339 (434)
T PRK15178 281 ITAIYQLIAGFETQLAEAKAEYAQLMVNGLDQNPLIPRLSAKIKVLEKQIGEQRNRLSN 339 (434)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCchhHHHHHHHHHHHHHHHHHHHhhc
Confidence 34445555677888888777777776655444455677788888888888888888864
No 476
>PF04799 Fzo_mitofusin: fzo-like conserved region; InterPro: IPR006884 This entry represents the heptad repeat domain which is conserved at the C terminus of Fzo/mitofusion family of GTPases. Fzo is a mediator of mitochondrial fusion during spermatogenesis []. This conserved region is also found in the human mitofusin protein []. This domain forms a dimeric antiparallel coiled coil structure, which has been proposed to act as a mitochodrial tether before vesicle fusion [].; GO: 0003924 GTPase activity, 0006184 GTP catabolic process, 0008053 mitochondrial fusion, 0005741 mitochondrial outer membrane, 0016021 integral to membrane; PDB: 1T3J_A.
Probab=37.53 E-value=1.1e+02 Score=30.12 Aligned_cols=49 Identities=18% Similarity=0.350 Sum_probs=27.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhhhhhhhhcccccccccCCccchhhHHHHHHHHHHHHH
Q 005043 612 EMEKKLADSLKEMELLKEKLAGLELAQEEANSLSNIVHSDNVRLEHDVAFLKAVLDDTQK 671 (717)
Q Consensus 612 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 671 (717)
+.+.-.++...|+..|..+++.+|.+|.++..|. +...+|..=||+-++
T Consensus 117 ~Vd~~~~eL~~eI~~L~~~i~~le~~~~~~k~Lr-----------nKa~~L~~eL~~F~~ 165 (171)
T PF04799_consen 117 QVDQTKNELEDEIKQLEKEIQRLEEIQSKSKTLR-----------NKANWLESELERFQE 165 (171)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHH
Confidence 3344444555566666677777777777766644 344455555555444
No 477
>KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription]
Probab=37.48 E-value=2.5e+02 Score=33.55 Aligned_cols=105 Identities=12% Similarity=0.091 Sum_probs=50.1
Q ss_pred CCEEEEEccccCCCCCcCcEEEEEcCCCceEeccCCCCCCCCCcccEEEEECCcEEEEEcCCCCCCCCCeEEEEECCCCc
Q 005043 207 SSVLILFGGEDGKRRKLNDLHMFDLKSLTWLPLHCTGTGPSPRSNHVAALYDDKNLLIFGGSSKSKTLNDLYSLDFETMI 286 (717)
Q Consensus 207 ~~~Lyv~GG~~~~~~~~~~v~~yD~~t~~W~~l~~~g~~P~~R~~~aa~~~~~~~lyV~GG~~~~~~~ndv~~yd~~t~~ 286 (717)
.|.-|+++|..+ ..+-++|..++.-.++= .| .-+.-.+.++...+..++.|+.++ -|.+||+.+..
T Consensus 545 PNs~Y~aTGSsD-----~tVRlWDv~~G~~VRiF-~G---H~~~V~al~~Sp~Gr~LaSg~ed~-----~I~iWDl~~~~ 610 (707)
T KOG0263|consen 545 PNSNYVATGSSD-----RTVRLWDVSTGNSVRIF-TG---HKGPVTALAFSPCGRYLASGDEDG-----LIKIWDLANGS 610 (707)
T ss_pred CcccccccCCCC-----ceEEEEEcCCCcEEEEe-cC---CCCceEEEEEcCCCceEeecccCC-----cEEEEEcCCCc
Confidence 455566655222 23455555555433331 11 112222344444443455555543 38888887643
Q ss_pred EEEeecCCCCCCCCcceEE-EEECCEEEEEecCCCCCccCeEEEEECCC
Q 005043 287 WTRIKIRGFHPSPRAGCCG-VLCGTKWYIAGGGSRKKRHAETLIFDILK 334 (717)
Q Consensus 287 W~~v~~~g~~P~~R~~~sa-v~~~~~IyV~GG~~~~~~~~dv~~yD~~t 334 (717)
-. ...- -..-...++ ...+|.+++.||.+.. |.++|...
T Consensus 611 ~v--~~l~--~Ht~ti~SlsFS~dg~vLasgg~Dns-----V~lWD~~~ 650 (707)
T KOG0263|consen 611 LV--KQLK--GHTGTIYSLSFSRDGNVLASGGADNS-----VRLWDLTK 650 (707)
T ss_pred ch--hhhh--cccCceeEEEEecCCCEEEecCCCCe-----EEEEEchh
Confidence 21 1110 011111222 2348999999997744 66667643
No 478
>KOG0971 consensus Microtubule-associated protein dynactin DCTN1/Glued [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=37.42 E-value=1.2e+02 Score=36.99 Aligned_cols=55 Identities=25% Similarity=0.348 Sum_probs=35.3
Q ss_pred HHHHHHHHHHhcchhHHHHHHHhhHHHHHhhhhhHHhhHHHHHHHHHHHHHHHHH
Q 005043 572 ESKMAALIRKNGILEGQLAAALVNREAAEKNFSSVLKSRQEMEKKLADSLKEMEL 626 (717)
Q Consensus 572 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~ 626 (717)
|++|..|..---+--..|..+.--++-|||+|+++-|...+.=+|++...+|++.
T Consensus 961 e~eikeLkk~aKmkqeelSe~qvRldmaEkkLss~~k~~~h~v~~~~ek~ee~~a 1015 (1243)
T KOG0971|consen 961 ETEIKELKKSAKMKQEELSEAQVRLDLAEKKLSSAAKDADHRVEKVQEKLEETQA 1015 (1243)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHhhhhhhhHhHHHHHHHHHHHHHHH
Confidence 3344443333223334567777788999999998888777776776666666554
No 479
>PRK12704 phosphodiesterase; Provisional
Probab=37.37 E-value=2.5e+02 Score=32.72 Aligned_cols=94 Identities=26% Similarity=0.222 Sum_probs=0.0
Q ss_pred HHHHHHHHHhcchhH---HHHHHHhhHHHHHhhhhhHHhh----HHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhcccc
Q 005043 573 SKMAALIRKNGILEG---QLAAALVNREAAEKNFSSVLKS----RQEMEKKLADSLKEMELLKEKLAGLELAQEEANSLS 645 (717)
Q Consensus 573 ~~~~~~~~~~~~~~~---~~~~~~~~~~~~e~~~~~~~~~----~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 645 (717)
.+-+..|++...+|+ ...+-+..++++.+.-+.+-+. ++++..+-..+.+..+.|..|...++..+++...
T Consensus 37 e~eAe~I~keA~~eAke~~ke~~leaeeE~~~~R~Ele~e~~~~e~~L~qrE~rL~~Ree~Le~r~e~Lekke~eL~~-- 114 (520)
T PRK12704 37 EEEAKRILEEAKKEAEAIKKEALLEAKEEIHKLRNEFEKELRERRNELQKLEKRLLQKEENLDRKLELLEKREEELEK-- 114 (520)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--
Q ss_pred cccccCCccchhhHHHHHHHHHHHHHHhhhhc
Q 005043 646 NIVHSDNVRLEHDVAFLKAVLDDTQKELHSTR 677 (717)
Q Consensus 646 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 677 (717)
.|.++.=+++-|++.++|+...+
T Consensus 115 ---------re~~Le~re~eLe~~~~~~~~~~ 137 (520)
T PRK12704 115 ---------KEKELEQKQQELEKKEEELEELI 137 (520)
T ss_pred ---------HHHHHHHHHHHHHHHHHHHHHHH
No 480
>PF13870 DUF4201: Domain of unknown function (DUF4201)
Probab=37.21 E-value=2.3e+02 Score=27.64 Aligned_cols=49 Identities=16% Similarity=0.142 Sum_probs=26.2
Q ss_pred HHHHHHHHHHHHHhcchhHHHHHHHhhHHHHHhhhhhHHhhHHHHHHHH
Q 005043 569 QFYESKMAALIRKNGILEGQLAAALVNREAAEKNFSSVLKSRQEMEKKL 617 (717)
Q Consensus 569 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~ 617 (717)
..+..|+..+..++..+..+|+........+++.+..+-..|..+.+..
T Consensus 80 ~h~keKl~~~~~~~~~l~~~l~~~~~~~~~~r~~l~~~k~~r~k~~~~~ 128 (177)
T PF13870_consen 80 THVKEKLHFLSEELERLKQELKDREEELAKLREELYRVKKERDKLRKQN 128 (177)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555555555555555555555555555555555555544444444443
No 481
>COG5019 CDC3 Septin family protein [Cell division and chromosome partitioning / Cytoskeleton]
Probab=37.18 E-value=87 Score=34.45 Aligned_cols=52 Identities=25% Similarity=0.404 Sum_probs=36.9
Q ss_pred HHHHHHHHHHHHHHHhcchhHHHHHHHhhHHHHHhhhhhHHhhHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 005043 567 IYQFYESKMAALIRKNGILEGQLAAALVNREAAEKNFSSVLKSRQEMEKKLADSLKEMELLKEKLAGLE 635 (717)
Q Consensus 567 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 635 (717)
+...++.|+.+.-++...+|.+| .+.|++|+.||.+..++++++|..|..+.
T Consensus 318 ~k~~~~~ki~~~e~~l~~~E~~l-----------------~~e~~~~n~~Le~~~~~l~~~e~~l~~~~ 369 (373)
T COG5019 318 LKKKFTEKIREKEKRLEELEQNL-----------------IEERKELNSKLEEIQKKLEDLEKRLEKLK 369 (373)
T ss_pred HHHHHHHHHHHhHHHHHHHHHHH-----------------HHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 34555566666655555555554 56788899999999999999888876654
No 482
>COG0216 PrfA Protein chain release factor A [Translation, ribosomal structure and biogenesis]
Probab=37.15 E-value=91 Score=33.84 Aligned_cols=88 Identities=24% Similarity=0.334 Sum_probs=40.9
Q ss_pred HHHHHHHhhHHHHHhhhhhH-HhhHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhcccccccccC---Ccc--chhhHH
Q 005043 587 GQLAAALVNREAAEKNFSSV-LKSRQEMEKKLADSLKEMELLKEKLAGLELAQEEANSLSNIVHSD---NVR--LEHDVA 660 (717)
Q Consensus 587 ~~~~~~~~~~~~~e~~~~~~-~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~---~~~--~~~~~~ 660 (717)
.+|+..+..-+++|+.|+.. +-+-+.-=++|..-..+++.+-++....+.++++......|.... .++ .|.|++
T Consensus 7 ~kl~~~~~r~~el~~~L~~p~v~~d~~~~~~lske~a~l~~iv~~~~~~~~~~~~l~~a~~~l~~~~D~em~ema~~Ei~ 86 (363)
T COG0216 7 EKLESLLERYEELEALLSDPEVISDPDEYRKLSKEYAELEPIVEKYREYKKAQEDLEDAKEMLAEEKDPEMREMAEEEIK 86 (363)
T ss_pred HHHHHHHHHHHHHHHHhcCcccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHH
Confidence 44555555555555554433 111111111222222233333344444444444444444444422 222 456777
Q ss_pred HHHHHHHHHHHHhh
Q 005043 661 FLKAVLDDTQKELH 674 (717)
Q Consensus 661 ~~~~~~~~~~~~~~ 674 (717)
.|++-++++++||.
T Consensus 87 ~~~~~~~~le~~L~ 100 (363)
T COG0216 87 ELEAKIEELEEELK 100 (363)
T ss_pred HHHHHHHHHHHHHH
Confidence 88888888888775
No 483
>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=37.08 E-value=8.4e+02 Score=29.59 Aligned_cols=147 Identities=18% Similarity=0.229 Sum_probs=82.2
Q ss_pred CEEEEEccccCCCCCcCcEEEEEcCCCceEeccCCCCCCCCCcccEEEEECCcEEEEEcCCCCCCCCCeEEEEECCCCc-
Q 005043 208 SVLILFGGEDGKRRKLNDLHMFDLKSLTWLPLHCTGTGPSPRSNHVAALYDDKNLLIFGGSSKSKTLNDLYSLDFETMI- 286 (717)
Q Consensus 208 ~~Lyv~GG~~~~~~~~~~v~~yD~~t~~W~~l~~~g~~P~~R~~~aa~~~~~~~lyV~GG~~~~~~~ndv~~yd~~t~~- 286 (717)
|.-+.||+.. +..+-+|+..+.... +.. +...+|.. ++++-.+..+++.|+.++ .|-+||...+.
T Consensus 319 GDWiA~g~~k-----lgQLlVweWqsEsYV-lKQ--QgH~~~i~-~l~YSpDgq~iaTG~eDg-----KVKvWn~~SgfC 384 (893)
T KOG0291|consen 319 GDWIAFGCSK-----LGQLLVWEWQSESYV-LKQ--QGHSDRIT-SLAYSPDGQLIATGAEDG-----KVKVWNTQSGFC 384 (893)
T ss_pred CCEEEEcCCc-----cceEEEEEeecccee-eec--ccccccee-eEEECCCCcEEEeccCCC-----cEEEEeccCceE
Confidence 6666776532 456777775554432 121 22233333 344445544888888764 47888876542
Q ss_pred EEEeecCCCCCCCCcceEEEEE--CCEEEEEecCCCCCccCeEEEEECCCCc-EEEeecCCCCCCCCCcceEEEEEEeCC
Q 005043 287 WTRIKIRGFHPSPRAGCCGVLC--GTKWYIAGGGSRKKRHAETLIFDILKGE-WSVAITSPSSSVTSNKGFTLVLVQHKE 363 (717)
Q Consensus 287 W~~v~~~g~~P~~R~~~sav~~--~~~IyV~GG~~~~~~~~dv~~yD~~t~~-W~~l~~~p~~~~~~r~g~s~v~v~~~~ 363 (717)
.... ..+-.+++++.+ .++.++.--.++. |..+|+...+ ++... . +.+.-++++++...
T Consensus 385 ~vTF------teHts~Vt~v~f~~~g~~llssSLDGt-----VRAwDlkRYrNfRTft-----~-P~p~QfscvavD~s- 446 (893)
T KOG0291|consen 385 FVTF------TEHTSGVTAVQFTARGNVLLSSSLDGT-----VRAWDLKRYRNFRTFT-----S-PEPIQFSCVAVDPS- 446 (893)
T ss_pred EEEe------ccCCCceEEEEEEecCCEEEEeecCCe-----EEeeeecccceeeeec-----C-CCceeeeEEEEcCC-
Confidence 2222 123445555543 5666666655544 6677776543 33322 1 24556777777443
Q ss_pred CcEEEEEcCCCCCCCCeEEEEEccCCc
Q 005043 364 KDFLVAFGGIKKEPSNQVEVLSIEKNE 390 (717)
Q Consensus 364 ~~~I~v~GG~~~~~~n~v~vyd~~~~e 390 (717)
+.|++.|+.+.. ++++++.++.+
T Consensus 447 -GelV~AG~~d~F---~IfvWS~qTGq 469 (893)
T KOG0291|consen 447 -GELVCAGAQDSF---EIFVWSVQTGQ 469 (893)
T ss_pred -CCEEEeeccceE---EEEEEEeecCe
Confidence 558888887655 67777777765
No 484
>KOG3859 consensus Septins (P-loop GTPases) [Cell cycle control, cell division, chromosome partitioning]
Probab=36.98 E-value=2.4e+02 Score=30.09 Aligned_cols=73 Identities=23% Similarity=0.319 Sum_probs=33.9
Q ss_pred CCchHHHHHHHHHHHHH----HHhcchhH----HHHHHHhhHHHHHhhhhhH----HhhHHHHHHHHHH----HHHHHHH
Q 005043 563 GPSSIYQFYESKMAALI----RKNGILEG----QLAAALVNREAAEKNFSSV----LKSRQEMEKKLAD----SLKEMEL 626 (717)
Q Consensus 563 ~~~~~~~~~~~~~~~~~----~~~~~~~~----~~~~~~~~~~~~e~~~~~~----~~~~~~~~~~~~~----~~~~~~~ 626 (717)
-+-++++.||.|-..++ ||-+.+.+ .+..--+..-+|||.|..- -+..|+-++||.+ +.+|...
T Consensus 316 ~p~s~qet~eaKr~e~~~e~qrkEee~rqmFvqrvkekE~elke~Ekel~~kf~~lkr~h~eEk~kle~~rr~Leee~~~ 395 (406)
T KOG3859|consen 316 KPFSLQETYEAKRNEFLGELQRKEEEMRQMFVQRVKEKEAELKEAEKELHEKFDRLKRLHQEEKKKLEEKRKQLEEEVNA 395 (406)
T ss_pred CCccHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33458888888866543 22222222 2222233334455544432 2333444444444 3444444
Q ss_pred HHHHHhhhh
Q 005043 627 LKEKLAGLE 635 (717)
Q Consensus 627 l~~~~~~~~ 635 (717)
+..|.+.++
T Consensus 396 f~~rk~~~~ 404 (406)
T KOG3859|consen 396 FQRRKTAAE 404 (406)
T ss_pred HHHHHHHHh
Confidence 555555554
No 485
>TIGR01144 ATP_synt_b ATP synthase, F0 subunit b. This model describes the F1/F0 ATP synthase b subunit in bacteria only. Scoring just below the trusted cutoff are the N-terminal domains of Mycobacterial b/delta fusion proteins and a subunit from an archaeon, Methanosarcina barkeri, in which the ATP synthase homolog differs in architecture and is not experimentally confirmed. This model helps resolve b from the related b' subunit. Within the family is an example from a sodium-translocating rather than proton-translocating ATP synthase.
Probab=36.83 E-value=3.4e+02 Score=25.41 Aligned_cols=29 Identities=14% Similarity=0.099 Sum_probs=15.9
Q ss_pred HHHHhcchhHHHHHHHhhHHHHHhhhhhH
Q 005043 578 LIRKNGILEGQLAAALVNREAAEKNFSSV 606 (717)
Q Consensus 578 ~~~~~~~~~~~~~~~~~~~~~~e~~~~~~ 606 (717)
+=.|.....+.|..|-..+++|++.+...
T Consensus 24 l~~R~~~I~~~l~~A~~~~~ea~~~~~e~ 52 (147)
T TIGR01144 24 IETRQKKIADGLASAERAKKEAALAQKKA 52 (147)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33445555566666666666665544433
No 486
>PF15525 DUF4652: Domain of unknown function (DUF4652)
Probab=36.78 E-value=4.5e+02 Score=26.35 Aligned_cols=68 Identities=10% Similarity=0.172 Sum_probs=41.1
Q ss_pred CCceEEEEEECCCCcEEEeeecCC--CCCCceeeEEEEEC-C-EEEEEccccCCCCCcCcEEEEEcCCCceEecc
Q 005043 170 SDRVSVWTFDTETECWSVVEAKGD--IPVARSGHTVVRAS-S-VLILFGGEDGKRRKLNDLHMFDLKSLTWLPLH 240 (717)
Q Consensus 170 ~~~~~v~~yD~~t~~W~~l~~~g~--~P~~R~~hs~~~~~-~-~Lyv~GG~~~~~~~~~~v~~yD~~t~~W~~l~ 240 (717)
.....+|++|..++.|..+..... --.|. -+..++ . -++++|...+.-.--..+|+|++.++.-+.+.
T Consensus 85 EgiGkIYIkn~~~~~~~~L~i~~~~~k~sPK---~i~WiDD~~L~vIIG~a~GTvS~GGnLy~~nl~tg~~~~ly 156 (200)
T PF15525_consen 85 EGIGKIYIKNLNNNNWWSLQIDQNEEKYSPK---YIEWIDDNNLAVIIGYAHGTVSKGGNLYKYNLNTGNLTELY 156 (200)
T ss_pred ccceeEEEEecCCCceEEEEecCcccccCCc---eeEEecCCcEEEEEccccceEccCCeEEEEEccCCceeEee
Confidence 345689999999998876643211 11122 233443 3 55666643332122357999999999988775
No 487
>KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=36.67 E-value=3.2e+02 Score=28.40 Aligned_cols=108 Identities=14% Similarity=0.136 Sum_probs=65.7
Q ss_pred EEECCEEEEEeccCCCCCCceEEEEEECCCCcEEEeeecCCCCCCceeeEEEEEC--CEEEEEccccCCCCCcCcEEEEE
Q 005043 153 ISWGKKVLLVGGKTDSGSDRVSVWTFDTETECWSVVEAKGDIPVARSGHTVVRAS--SVLILFGGEDGKRRKLNDLHMFD 230 (717)
Q Consensus 153 v~~~~~Iyv~GG~~~~~~~~~~v~~yD~~t~~W~~l~~~g~~P~~R~~hs~~~~~--~~Lyv~GG~~~~~~~~~~v~~yD 230 (717)
...++.-+..||-+ ..+.+||..|++-..-- ..--..-.++.++ ..+++-|+.+. .+..||
T Consensus 67 ~s~Dnskf~s~GgD------k~v~vwDV~TGkv~Rr~-----rgH~aqVNtV~fNeesSVv~SgsfD~------s~r~wD 129 (307)
T KOG0316|consen 67 LSSDNSKFASCGGD------KAVQVWDVNTGKVDRRF-----RGHLAQVNTVRFNEESSVVASGSFDS------SVRLWD 129 (307)
T ss_pred ccccccccccCCCC------ceEEEEEcccCeeeeec-----ccccceeeEEEecCcceEEEeccccc------eeEEEE
Confidence 33456666666643 25889999987643211 0000111123333 46777776654 477889
Q ss_pred cCCCceEeccCCCCCCCCCcccEEEEECCcEEEEEcCCCCCCCCCeEEEEECCCCc
Q 005043 231 LKSLTWLPLHCTGTGPSPRSNHVAALYDDKNLLIFGGSSKSKTLNDLYSLDFETMI 286 (717)
Q Consensus 231 ~~t~~W~~l~~~g~~P~~R~~~aa~~~~~~~lyV~GG~~~~~~~ndv~~yd~~t~~ 286 (717)
-.+...+++. -+...+.+-..+.+.+. .+|.|..++ .+..||+..++
T Consensus 130 CRS~s~ePiQ---ildea~D~V~Si~v~~h-eIvaGS~DG-----tvRtydiR~G~ 176 (307)
T KOG0316|consen 130 CRSRSFEPIQ---ILDEAKDGVSSIDVAEH-EIVAGSVDG-----TVRTYDIRKGT 176 (307)
T ss_pred cccCCCCccc---hhhhhcCceeEEEeccc-EEEeeccCC-----cEEEEEeecce
Confidence 9888887775 56667777777777777 566665554 37888886654
No 488
>PRK13453 F0F1 ATP synthase subunit B; Provisional
Probab=36.65 E-value=1.2e+02 Score=29.58 Aligned_cols=35 Identities=20% Similarity=0.191 Sum_probs=14.2
Q ss_pred HHHHhhHHHHHhhhhhHHhhHHHHHHHHHHHHHHH
Q 005043 590 AAALVNREAAEKNFSSVLKSRQEMEKKLADSLKEM 624 (717)
Q Consensus 590 ~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~ 624 (717)
+....+.+.||+....+-+.+++.|++|+++.+|.
T Consensus 52 ~~I~~~l~~Ae~~~~eA~~~~~e~e~~l~~a~~ea 86 (173)
T PRK13453 52 RDINRDIDDAEQAKLNAQKLEEENKQKLKETQEEV 86 (173)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333334444444444444444444444444333
No 489
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=36.61 E-value=1.7e+02 Score=35.48 Aligned_cols=50 Identities=14% Similarity=0.232 Sum_probs=26.4
Q ss_pred chhHHHHHHHhhHHHHHhhhhhHHhhHHHHHHHHHHHHHHHHHHHHHHhh
Q 005043 584 ILEGQLAAALVNREAAEKNFSSVLKSRQEMEKKLADSLKEMELLKEKLAG 633 (717)
Q Consensus 584 ~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 633 (717)
.|..|...-+....+++..+..+-++.+.+.+|+.++.+.+|.|.+++..
T Consensus 569 ~Lk~~~e~Ql~~L~~l~e~~~~l~~~ae~LaeR~e~a~d~Qe~L~~R~~~ 618 (717)
T PF10168_consen 569 LLKQQKEQQLKELQELQEERKSLRESAEKLAERYEEAKDKQEKLMKRVDR 618 (717)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444444444555555555555555555555555555555555555543
No 490
>PF05164 ZapA: Cell division protein ZapA; InterPro: IPR007838 This entry a structural domain found in the cell division protein ZapA, as well as in related proteins. This domain has a core structure consisting of two layers alpha/beta, and has a long C-terminal helix that forms dimeric parallel and tetrameric antiparallel coiled coils []. ZapA interacts with FtsZ, where FtsZ is part of a mid-cell cytokinetic structure termed the Z-ring that recruits a hierarchy of fission related proteins early in the bacterial cell cycle. ZapA drives the polymerisation and filament bundling of FtsZ, thereby contributing to the spatio-temporal tuning of the Z-ring.; PDB: 1T3U_B 1W2E_B 3HNW_A.
Probab=36.55 E-value=1.6e+02 Score=24.91 Aligned_cols=62 Identities=19% Similarity=0.169 Sum_probs=41.2
Q ss_pred HHHHHHHHHHHHHHhcchhHHHHHHHhhHHHHHhhhhhHHhhHHHHHHHHHHHHHHHHHHHHHH
Q 005043 568 YQFYESKMAALIRKNGILEGQLAAALVNREAAEKNFSSVLKSRQEMEKKLADSLKEMELLKEKL 631 (717)
Q Consensus 568 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 631 (717)
-...+.++..+-.++..+..+-.++|+...-|.+.+..--+..+..+ ++...++++.|.++|
T Consensus 27 a~~i~~~i~~~~~~~~~~~~~~~~vlaaLnla~e~~~~~~~~~~~~~--~~~l~~~i~~L~~~l 88 (89)
T PF05164_consen 27 AELINEKINEIKKKYPKLSPERLAVLAALNLADELLKLKRELDELEE--LERLEERIEELNERL 88 (89)
T ss_dssp HHHHHHHHHHHCTTCCTSSHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHh--HHHHHHHHHHHHHhh
Confidence 45788889998888889999999999998888776542222211111 335555555555554
No 491
>PF11559 ADIP: Afadin- and alpha -actinin-Binding; InterPro: IPR021622 This family is found in mammals where it is localised at cell-cell adherens junctions [], and in Sch. pombe and other fungi where it anchors spindle-pole bodies to spindle microtubules []. It is a coiled-coil structure, and in pombe, it is required for anchoring the minus end of spindle microtubules to the centrosome equivalent, the spindle-pole body. The name ADIP derives from the family being composed of Afadin- and alpha -Actinin-Binding Proteins Localised at Cell-Cell Adherens Junctions.
Probab=36.53 E-value=2.3e+02 Score=26.81 Aligned_cols=23 Identities=22% Similarity=0.325 Sum_probs=9.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhh
Q 005043 612 EMEKKLADSLKEMELLKEKLAGL 634 (717)
Q Consensus 612 ~~~~~~~~~~~~~~~l~~~~~~~ 634 (717)
.++.+++.+.+|+..++++...+
T Consensus 77 rL~~~~~~~ere~~~~~~~~~~l 99 (151)
T PF11559_consen 77 RLKEQLEELERELASAEEKERQL 99 (151)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444444444433333333
No 492
>KOG0963 consensus Transcription factor/CCAAT displacement protein CDP1 [Transcription]
Probab=36.49 E-value=1.5e+02 Score=34.81 Aligned_cols=28 Identities=29% Similarity=0.286 Sum_probs=21.9
Q ss_pred HHHHHHHHHHhcchhHHHHHHHhhHHHH
Q 005043 572 ESKMAALIRKNGILEGQLAAALVNREAA 599 (717)
Q Consensus 572 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 599 (717)
..+|-+|=++.+.|.+||+.|--+++++
T Consensus 248 q~ri~~lE~e~e~L~~ql~~~N~~~~~~ 275 (629)
T KOG0963|consen 248 QQRIVFLEREVEQLREQLAKANSSKKLA 275 (629)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhhhhhhc
Confidence 3456667788999999999888777766
No 493
>PRK10698 phage shock protein PspA; Provisional
Probab=36.42 E-value=1.3e+02 Score=30.76 Aligned_cols=76 Identities=13% Similarity=0.130 Sum_probs=0.0
Q ss_pred HHHHHHhcchhHHHHHHHhhHHHHHhhhhhHHhhHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhcccccccccCC
Q 005043 576 AALIRKNGILEGQLAAALVNREAAEKNFSSVLKSRQEMEKKLADSLKEMELLKEKLAGLELAQEEANSLSNIVHSDN 652 (717)
Q Consensus 576 ~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 652 (717)
..+|.+....+.+++.--+..++.+..+...-...++|+.|+.+.-.....|+-+...++ ||.+.|..-.-+.+++
T Consensus 88 r~AL~~K~~~~~~~~~l~~~~~~~~~~~~~L~~~l~~L~~ki~eak~k~~~L~aR~~~A~-a~~~~~~~~~~~~~~~ 163 (222)
T PRK10698 88 RAALIEKQKLTDLIATLEHEVTLVDETLARMKKEIGELENKLSETRARQQALMLRHQAAS-SSRDVRRQLDSGKLDE 163 (222)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHhCCCcch
No 494
>PRK14127 cell division protein GpsB; Provisional
Probab=36.42 E-value=93 Score=28.25 Aligned_cols=42 Identities=19% Similarity=0.347 Sum_probs=0.0
Q ss_pred hHHHHHhhhhhHHhhHHHHHHHHHHHHHHHHHHHHHHhhhhh
Q 005043 595 NREAAEKNFSSVLKSRQEMEKKLADSLKEMELLKEKLAGLEL 636 (717)
Q Consensus 595 ~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 636 (717)
..+++..=|..|.+..+.+.+.++.+.+|.+.|+++|+.++.
T Consensus 24 d~~EVD~FLd~V~~dye~l~~e~~~Lk~e~~~l~~~l~e~~~ 65 (109)
T PRK14127 24 DQDEVDKFLDDVIKDYEAFQKEIEELQQENARLKAQVDELTK 65 (109)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 495
>COG3391 Uncharacterized conserved protein [Function unknown]
Probab=36.32 E-value=6.3e+02 Score=27.90 Aligned_cols=201 Identities=16% Similarity=0.124 Sum_probs=0.0
Q ss_pred CCEEEEEcccCCCCCcccEEEEEcCCCceEEccccccCCCCCCCCCCCcccceEEEEECCEEEEEeccCCCCCCceEEEE
Q 005043 98 GNKMIVVGGESGNGLLDDVQVLNFDRFSWTAASSKLYLSPSSLPLKIPACRGHSLISWGKKVLLVGGKTDSGSDRVSVWT 177 (717)
Q Consensus 98 ~~~lyV~GG~~~~~~~~~v~~yd~~t~~W~~l~~~~~~~~~~~~~~~p~r~~hs~v~~~~~Iyv~GG~~~~~~~~~~v~~ 177 (717)
++++|+..+. .+.+.++|..+++-....+. ...-.+.++...++.+||..... ..+.+.+
T Consensus 85 ~~~vyv~~~~-----~~~v~vid~~~~~~~~~~~v-----------G~~P~~~~~~~~~~~vYV~n~~~----~~~~vsv 144 (381)
T COG3391 85 GNKVYVTTGD-----SNTVSVIDTATNTVLGSIPV-----------GLGPVGLAVDPDGKYVYVANAGN----GNNTVSV 144 (381)
T ss_pred CCeEEEecCC-----CCeEEEEcCcccceeeEeee-----------ccCCceEEECCCCCEEEEEeccc----CCceEEE
Q ss_pred EECCCCcEEEeeecCCCCCCceeeEEEEECCEEEEEccccCCCCCcCcEEEEEcCCCceE-eccCCCCCCCCCcccEEEE
Q 005043 178 FDTETECWSVVEAKGDIPVARSGHTVVRASSVLILFGGEDGKRRKLNDLHMFDLKSLTWL-PLHCTGTGPSPRSNHVAAL 256 (717)
Q Consensus 178 yD~~t~~W~~l~~~g~~P~~R~~hs~~~~~~~Lyv~GG~~~~~~~~~~v~~yD~~t~~W~-~l~~~g~~P~~R~~~aa~~ 256 (717)
+|..+++-....+.|..| .+.+....++++|+. ....+.+..+|+.+..-. .-.........+-....+-
T Consensus 145 id~~t~~~~~~~~vG~~P---~~~a~~p~g~~vyv~------~~~~~~v~vi~~~~~~v~~~~~~~~~~~~~~P~~i~v~ 215 (381)
T COG3391 145 IDAATNKVTATIPVGNTP---TGVAVDPDGNKVYVT------NSDDNTVSVIDTSGNSVVRGSVGSLVGVGTGPAGIAVD 215 (381)
T ss_pred EeCCCCeEEEEEecCCCc---ceEEECCCCCeEEEE------ecCCCeEEEEeCCCcceeccccccccccCCCCceEEEC
Q ss_pred ECCcEEEEEcCCCCCCCCCeEEEEECCCCcEEEeecCCCCCCCCcceEEEEECCEEEEEecCCCCCccCeEEEEECCCCc
Q 005043 257 YDDKNLLIFGGSSKSKTLNDLYSLDFETMIWTRIKIRGFHPSPRAGCCGVLCGTKWYIAGGGSRKKRHAETLIFDILKGE 336 (717)
Q Consensus 257 ~~~~~lyV~GG~~~~~~~ndv~~yd~~t~~W~~v~~~g~~P~~R~~~sav~~~~~IyV~GG~~~~~~~~dv~~yD~~t~~ 336 (717)
.++.++|+.-..+. .+.+..+|..++.-.......... ...+-...-.+..+|+.-..... +.+.|..+..
T Consensus 216 ~~g~~~yV~~~~~~---~~~v~~id~~~~~v~~~~~~~~~~-~~~~v~~~p~g~~~yv~~~~~~~-----V~vid~~~~~ 286 (381)
T COG3391 216 PDGNRVYVANDGSG---SNNVLKIDTATGNVTATDLPVGSG-APRGVAVDPAGKAAYVANSQGGT-----VSVIDGATDR 286 (381)
T ss_pred CCCCEEEEEeccCC---CceEEEEeCCCceEEEeccccccC-CCCceeECCCCCEEEEEecCCCe-----EEEEeCCCCc
No 496
>TIGR02449 conserved hypothetical protein TIGR02449. Members of this family are small proteins, typically 73 amino acids in length, with single copies in each of several Proteobacteria, including Xylella fastidiosa, Pseudomonas aeruginosa, and Xanthomonas campestris. The function is unknown.
Probab=36.12 E-value=2.4e+02 Score=23.19 Aligned_cols=60 Identities=15% Similarity=0.151 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHhcchhHHHHHHHhhHHHHHhhhhhHHhhHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 005043 569 QFYESKMAALIRKNGILEGQLAAALVNREAAEKNFSSVLKSRQEMEKKLADSLKEMELLKEKLAGLE 635 (717)
Q Consensus 569 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 635 (717)
+..+.|+..||++...| -+.-...-..+......|.++-.|.+.+-.-+|.|=..|-++|
T Consensus 3 ~~Le~kle~Li~~~~~L-------~~EN~~Lr~q~~~~~~ER~~L~ekne~Ar~rvEamI~RLk~le 62 (65)
T TIGR02449 3 QALAAQVEHLLEYLERL-------KSENRLLRAQEKTWREERAQLLEKNEQARQKVEAMITRLKALE 62 (65)
T ss_pred HHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhc
No 497
>KOG0978 consensus E3 ubiquitin ligase involved in syntaxin degradation [Posttranslational modification, protein turnover, chaperones]
Probab=35.94 E-value=1.5e+02 Score=35.39 Aligned_cols=106 Identities=28% Similarity=0.308 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHhcchhHHHHHHHhhHHHHHhhhhhHHhhHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhccccccccc
Q 005043 571 YESKMAALIRKNGILEGQLAAALVNREAAEKNFSSVLKSRQEMEKKLADSLKEMELLKEKLAGLELAQEEANSLSNIVHS 650 (717)
Q Consensus 571 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 650 (717)
.|.+...+--....++.+|..=..++|.--|+...+-++...+.-++....+.||.+++.++.+++.-| +-|-
T Consensus 529 leeq~~~lt~~~~~l~~el~~~~~~le~~kk~~~e~~~~~~~Lq~~~ek~~~~le~i~~~~~e~~~ele-------~~~~ 601 (698)
T KOG0978|consen 529 LEEQERGLTSNESKLIKELTTLTQSLEMLKKKAQEAKQSLEDLQIELEKSEAKLEQIQEQYAELELELE-------IEKF 601 (698)
T ss_pred HHHHHHHhhHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHH
Q ss_pred CCccchhhHHHHHHHHHHHHHHhh--hhccchhhc
Q 005043 651 DNVRLEHDVAFLKAVLDDTQKELH--STRGVLAGE 683 (717)
Q Consensus 651 ~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~ 683 (717)
-+-|||.|..-||--|++++|+=+ |-=.+|+-|
T Consensus 602 k~~rleEE~e~L~~kle~~k~~~~~~s~d~~L~EE 636 (698)
T KOG0978|consen 602 KRKRLEEELERLKRKLERLKKEESGASADEVLAEE 636 (698)
T ss_pred HHHHHHHHHHHHHHHHHHhccccccccccHHHHHH
No 498
>KOG0018 consensus Structural maintenance of chromosome protein 1 (sister chromatid cohesion complex Cohesin, subunit SMC1) [Cell cycle control, cell division, chromosome partitioning]
Probab=35.90 E-value=1.7e+02 Score=36.43 Aligned_cols=113 Identities=17% Similarity=0.135 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHH----HhcchhHHHHHHHhhHHHHHh------------------hhhhHHhhHHHHHHHHHHHHHHHH
Q 005043 568 YQFYESKMAALIR----KNGILEGQLAAALVNREAAEK------------------NFSSVLKSRQEMEKKLADSLKEME 625 (717)
Q Consensus 568 ~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~e~------------------~~~~~~~~~~~~~~~~~~~~~~~~ 625 (717)
...|+++|+.--+ .+.+++.|+..=-..|++|.+ .|-.-++-++++|+++-.....+|
T Consensus 340 ~~~fekei~~~~q~rg~~lnl~d~~~~ey~rlk~ea~~~~~~el~~ln~~~r~~~~~ld~~~~~~~elE~r~k~l~~sve 419 (1141)
T KOG0018|consen 340 KEEFEKEIEERSQERGSELNLKDDQVEEYERLKEEACKEALEELEVLNRNMRSDQDTLDHELERRAELEARIKQLKESVE 419 (1141)
T ss_pred HHHHHHHHHHHHhhccccCCcchHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHhhhhhhhhhhcccccccccCCccchhhHHHHHHHHHHHHHHhhhhccch
Q 005043 626 LLKEKLAGLELAQEEANSLSNIVHSDNVRLEHDVAFLKAVLDDTQKELHSTRGVL 680 (717)
Q Consensus 626 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 680 (717)
.+.-..+.+.-.+-+.+..--..--|---|+.|+--++---.+.++||..+|+-|
T Consensus 420 r~~~~~~~L~~~i~s~~~~~~e~~~d~~~l~~~~~~~~~~~~e~n~eL~~~~~ql 474 (1141)
T KOG0018|consen 420 RLDKRRNKLAAKITSLSRSYEELKHDLDSLESLVSSAEEEPYELNEELVEVLDQL 474 (1141)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhcHHHHHHHHhhhhhhHHHHHHHHHHHHHHH
No 499
>KOG2856 consensus Adaptor protein PACSIN [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport; Cytoskeleton]
Probab=35.89 E-value=2e+02 Score=31.56 Aligned_cols=68 Identities=28% Similarity=0.386 Sum_probs=0.0
Q ss_pred HHHHhhHHHHHhhhhhHHhhHHHHHHHHHHH-------HHHHHHHHHHHhhhhhhhhhhcccccccccCCccchhhHHHH
Q 005043 590 AAALVNREAAEKNFSSVLKSRQEMEKKLADS-------LKEMELLKEKLAGLELAQEEANSLSNIVHSDNVRLEHDVAFL 662 (717)
Q Consensus 590 ~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~-------~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 662 (717)
+++....|-.||=...|.|.|.+-|+-|+++ ++.||..=|+-...| |.-+-||
T Consensus 177 eq~kKlqdrveK~k~evqktkekYektl~el~~yt~~YmE~MeqvFe~CQ~fE--------------------~~Rl~Ff 236 (472)
T KOG2856|consen 177 EQLKKLQDRVEKCKQEVQKTKEKYEKTLAELNKYTPVYMEDMEQVFEQCQQFE--------------------EKRLQFF 236 (472)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHH--------------------HHHHHHH
Q ss_pred HHHHHHHHHHhhhhc
Q 005043 663 KAVLDDTQKELHSTR 677 (717)
Q Consensus 663 ~~~~~~~~~~~~~~~ 677 (717)
|-||-++|+-|.-+|
T Consensus 237 keil~~v~~hldl~~ 251 (472)
T KOG2856|consen 237 KEILLKVQRHLDLSR 251 (472)
T ss_pred HHHHHHHHHHhhhhh
No 500
>PRK10476 multidrug resistance protein MdtN; Provisional
Probab=35.77 E-value=1.4e+02 Score=32.47 Aligned_cols=130 Identities=14% Similarity=0.113 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHhcchhHHHHHHHhhHHHHHhhhhhHHhhHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhccccccc
Q 005043 569 QFYESKMAALIRKNGILEGQLAAALVNREAAEKNFSSVLKSRQEMEKKLADSLKEMELLKEKLAGLELAQEEANSLSNIV 648 (717)
Q Consensus 569 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 648 (717)
..++.+++++--....++.+|+.+.+..++.+.+++.+-...+.++..++.+.++++..++-...==-.+++..+
T Consensus 82 ~~~~~~l~~a~a~l~~a~a~l~~~~~~~~~~~~~~~~~~~~i~~a~~~l~~a~~~~~R~~~L~~~g~vS~~~~~~----- 156 (346)
T PRK10476 82 RPYELTVAQAQADLALADAQIMTTQRSVDAERSNAASANEQVERARANAKLATRTLERLEPLLAKGYVSAQQVDQ----- 156 (346)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCcCHHHHHH-----
Q ss_pred ccCCccchhhHHHHHHHHHHHHHHhhhhc---cchhhccccceeeEEEeehhhhhhhhhcccCC
Q 005043 649 HSDNVRLEHDVAFLKAVLDDTQKELHSTR---GVLAGERARAFQLQVEVFHLKQRLQSLENRAP 709 (717)
Q Consensus 649 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 709 (717)
.+.++.=.++-++..+.++.+.+ +-+...+++-=++|-++-..+..|..++=|||
T Consensus 157 ------a~~~~~~a~~~l~~a~~~~~~~~~~~~~~~~~~a~~~~~~a~l~~a~~~l~~~~I~AP 214 (346)
T PRK10476 157 ------ARTAQRDAEVSLNQALLQAQAAAAAVGGVDALVAQRAAREAALAIAELHLEDTTVRAP 214 (346)
T ss_pred ------HHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHhhcCEEECC
Done!