Query 005043
Match_columns 717
No_of_seqs 430 out of 3284
Neff 7.4
Searched_HMMs 29240
Date Mon Mar 25 13:39:15 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/005043.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/005043hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2xn4_A Kelch-like protein 2; s 100.0 1.8E-43 6.1E-48 373.8 37.3 292 33-360 7-299 (302)
2 1zgk_A Kelch-like ECH-associat 100.0 2.9E-43 9.8E-48 374.1 34.9 293 29-359 12-308 (308)
3 1zgk_A Kelch-like ECH-associat 100.0 2E-43 6.7E-48 375.4 33.2 281 83-394 9-293 (308)
4 3ii7_A Kelch-like protein 7; p 100.0 1E-42 3.6E-47 368.6 35.5 282 41-361 11-295 (306)
5 2vpj_A Kelch-like protein 12; 100.0 3.1E-42 1.1E-46 363.8 34.9 286 39-360 12-300 (301)
6 3ii7_A Kelch-like protein 7; p 100.0 2.5E-41 8.7E-46 357.9 37.2 263 98-394 11-278 (306)
7 2xn4_A Kelch-like protein 2; s 100.0 3.8E-41 1.3E-45 355.9 36.8 269 93-393 10-281 (302)
8 2woz_A Kelch repeat and BTB do 100.0 7.4E-42 2.5E-46 364.6 29.6 293 33-372 7-315 (318)
9 4asc_A Kelch repeat and BTB do 100.0 6.3E-42 2.1E-46 364.7 26.6 284 42-372 5-305 (315)
10 2vpj_A Kelch-like protein 12; 100.0 9E-41 3.1E-45 352.5 34.1 267 96-393 12-283 (301)
11 4asc_A Kelch repeat and BTB do 100.0 2.4E-40 8.1E-45 352.5 29.4 262 98-394 4-283 (315)
12 2uvk_A YJHT; unknown function, 100.0 3.3E-40 1.1E-44 357.0 29.2 280 84-393 5-347 (357)
13 2woz_A Kelch repeat and BTB do 100.0 9E-39 3.1E-43 340.7 30.2 270 87-394 7-293 (318)
14 2uvk_A YJHT; unknown function, 100.0 6.1E-38 2.1E-42 339.2 29.0 277 36-342 14-350 (357)
15 2zwa_A Leucine carboxyl methyl 100.0 9.5E-37 3.2E-41 359.8 27.7 283 84-388 384-694 (695)
16 2zwa_A Leucine carboxyl methyl 100.0 1E-33 3.5E-38 333.9 25.5 268 40-334 396-694 (695)
17 1k3i_A Galactose oxidase precu 100.0 1.8E-33 6E-38 329.9 20.1 337 16-387 167-548 (656)
18 1k3i_A Galactose oxidase precu 100.0 2.2E-32 7.6E-37 320.5 22.5 313 71-413 173-531 (656)
19 3dsm_A Uncharacterized protein 98.4 0.00021 7.1E-09 75.4 29.1 253 86-390 41-303 (328)
20 3dsm_A Uncharacterized protein 98.0 0.0062 2.1E-07 64.0 29.5 232 113-391 16-256 (328)
21 2ovr_B FBW7, F-BOX/WD repeat p 97.8 0.012 4E-07 64.0 28.8 199 153-389 245-443 (445)
22 3mbr_X Glutamine cyclotransfer 97.8 0.007 2.4E-07 61.4 24.8 164 147-340 21-185 (243)
23 3mbr_X Glutamine cyclotransfer 97.7 0.0068 2.3E-07 61.5 24.0 192 88-317 20-223 (243)
24 3q7m_A Lipoprotein YFGL, BAMB; 97.7 0.043 1.5E-06 58.1 31.6 233 93-390 48-298 (376)
25 1l0q_A Surface layer protein; 97.7 0.0037 1.3E-07 66.3 23.0 227 99-390 2-235 (391)
26 1l0q_A Surface layer protein; 97.7 0.0068 2.3E-07 64.2 24.3 228 98-390 43-277 (391)
27 3bws_A Protein LP49; two-domai 97.6 0.0034 1.2E-07 67.5 20.3 227 115-390 102-336 (433)
28 3nol_A Glutamine cyclotransfer 97.6 0.0073 2.5E-07 61.9 21.0 189 90-317 44-244 (262)
29 3q7m_A Lipoprotein YFGL, BAMB; 97.5 0.09 3.1E-06 55.6 30.4 227 90-390 95-339 (376)
30 3bws_A Protein LP49; two-domai 97.5 0.03 1E-06 60.0 26.2 241 98-390 133-392 (433)
31 3nol_A Glutamine cyclotransfer 97.4 0.027 9.4E-07 57.6 23.7 164 148-341 44-208 (262)
32 1k8k_C P40, ARP2/3 complex 41 97.4 0.036 1.2E-06 57.6 25.0 198 98-341 63-283 (372)
33 4ery_A WD repeat-containing pr 97.4 0.095 3.2E-06 53.5 27.7 233 98-390 34-270 (312)
34 3nok_A Glutaminyl cyclase; bet 97.4 0.0073 2.5E-07 62.0 18.5 160 90-290 56-216 (268)
35 3vgz_A Uncharacterized protein 97.4 0.17 5.8E-06 52.0 30.9 241 98-390 52-305 (353)
36 2ovr_B FBW7, F-BOX/WD repeat p 97.3 0.082 2.8E-06 57.1 27.7 227 98-391 168-394 (445)
37 3jrp_A Fusion protein of prote 97.3 0.014 4.7E-07 60.8 20.6 237 98-389 22-288 (379)
38 4ery_A WD repeat-containing pr 97.3 0.15 5.2E-06 51.9 27.9 194 98-338 76-272 (312)
39 2hqs_A Protein TOLB; TOLB, PAL 97.3 0.023 8E-07 61.7 22.7 242 98-390 143-389 (415)
40 1p22_A F-BOX/WD-repeat protein 97.3 0.043 1.5E-06 59.4 24.4 230 94-390 138-367 (435)
41 2ojh_A Uncharacterized protein 97.3 0.051 1.7E-06 53.9 23.2 228 113-391 21-261 (297)
42 2iwa_A Glutamine cyclotransfer 97.2 0.075 2.6E-06 54.6 24.4 201 91-334 23-237 (266)
43 2iwa_A Glutamine cyclotransfer 97.2 0.12 4.1E-06 53.0 25.8 204 150-389 24-238 (266)
44 1ri6_A Putative isomerase YBHE 97.2 0.035 1.2E-06 56.8 21.6 261 99-412 50-333 (343)
45 3vgz_A Uncharacterized protein 97.2 0.28 9.7E-06 50.3 31.1 202 98-340 100-309 (353)
46 4aez_A CDC20, WD repeat-contai 97.1 0.073 2.5E-06 56.9 24.0 222 115-390 114-338 (401)
47 3ow8_A WD repeat-containing pr 97.1 0.1 3.6E-06 54.1 24.5 189 156-390 91-281 (321)
48 1k8k_C P40, ARP2/3 complex 41 97.1 0.055 1.9E-06 56.2 22.4 240 98-393 19-281 (372)
49 3e5z_A Putative gluconolactona 97.1 0.27 9.1E-06 49.8 27.1 254 72-390 16-288 (296)
50 1gxr_A ESG1, transducin-like e 97.0 0.13 4.4E-06 52.3 23.8 234 98-390 62-298 (337)
51 2z2n_A Virginiamycin B lyase; 97.0 0.33 1.1E-05 48.5 26.5 226 98-389 67-296 (299)
52 4aez_A CDC20, WD repeat-contai 97.0 0.07 2.4E-06 57.0 22.5 234 98-390 145-382 (401)
53 1gxr_A ESG1, transducin-like e 97.0 0.12 4.1E-06 52.5 23.3 225 98-386 108-335 (337)
54 1got_B GT-beta; complex (GTP-b 97.0 0.089 3E-06 54.9 22.5 233 98-390 66-303 (340)
55 3v7d_B Cell division control p 96.9 0.42 1.5E-05 51.5 28.2 234 95-390 128-383 (464)
56 1r5m_A SIR4-interacting protei 96.9 0.063 2.2E-06 56.6 21.0 232 98-390 119-363 (425)
57 3ow8_A WD repeat-containing pr 96.9 0.26 8.9E-06 51.1 25.2 226 99-386 92-319 (321)
58 2z2n_A Virginiamycin B lyase; 96.8 0.46 1.6E-05 47.4 26.9 225 98-386 25-253 (299)
59 3v7d_B Cell division control p 96.8 0.51 1.7E-05 50.9 28.0 146 206-390 278-423 (464)
60 3hfq_A Uncharacterized protein 96.8 0.13 4.5E-06 53.3 22.3 248 98-390 50-321 (347)
61 3scy_A Hypothetical bacterial 96.8 0.54 1.8E-05 48.9 26.9 76 258-342 221-301 (361)
62 3nok_A Glutaminyl cyclase; bet 96.8 0.043 1.5E-06 56.2 17.2 159 148-339 56-215 (268)
63 2xbg_A YCF48-like protein; pho 96.7 0.71 2.4E-05 48.2 27.7 251 73-386 65-320 (327)
64 1sq9_A Antiviral protein SKI8; 96.7 0.25 8.5E-06 51.8 23.8 247 97-390 24-324 (397)
65 3jrp_A Fusion protein of prote 96.7 0.073 2.5E-06 55.2 19.3 200 99-342 69-296 (379)
66 3jro_A Fusion protein of prote 96.7 0.034 1.2E-06 65.4 18.5 239 98-389 20-286 (753)
67 1r5m_A SIR4-interacting protei 96.7 0.082 2.8E-06 55.7 19.6 146 156-336 216-363 (425)
68 4gga_A P55CDC, cell division c 96.7 0.39 1.3E-05 51.5 25.3 224 115-390 126-355 (420)
69 1got_B GT-beta; complex (GTP-b 96.7 0.32 1.1E-05 50.6 23.8 190 98-336 108-303 (340)
70 1pjx_A Dfpase, DIISOPROPYLFLUO 96.7 0.32 1.1E-05 49.2 23.3 249 98-390 28-301 (314)
71 3u4y_A Uncharacterized protein 96.7 0.15 5E-06 52.3 20.8 234 98-391 9-255 (331)
72 4gqb_B Methylosome protein 50; 96.7 0.14 4.8E-06 54.0 21.0 188 156-389 138-332 (344)
73 3azo_A Aminopeptidase; POP fam 96.6 0.62 2.1E-05 53.0 27.8 199 113-342 160-377 (662)
74 3hfq_A Uncharacterized protein 96.6 0.16 5.3E-06 52.7 20.8 236 115-388 19-271 (347)
75 1rwi_B Serine/threonine-protei 96.6 0.2 6.9E-06 49.6 20.7 229 98-390 34-266 (270)
76 3v9f_A Two-component system se 96.6 0.083 2.9E-06 62.2 20.6 225 115-390 428-658 (781)
77 1kb0_A Quinohemoprotein alcoho 96.6 0.26 8.8E-06 57.3 24.4 131 92-239 71-207 (677)
78 3zwl_B Eukaryotic translation 96.6 0.82 2.8E-05 46.7 26.7 200 98-340 43-255 (369)
79 2xbg_A YCF48-like protein; pho 96.6 0.66 2.2E-05 48.4 25.4 242 72-373 23-269 (327)
80 3mkq_A Coatomer beta'-subunit; 96.6 0.16 5.4E-06 59.2 22.7 231 98-390 24-261 (814)
81 1jmx_B Amine dehydrogenase; ox 96.5 0.29 9.9E-06 50.1 22.3 160 98-290 10-181 (349)
82 2z3z_A Dipeptidyl aminopeptida 96.5 0.25 8.6E-06 56.8 23.8 196 172-390 234-437 (706)
83 2hqs_A Protein TOLB; TOLB, PAL 96.5 0.11 3.8E-06 56.2 19.6 201 98-341 189-394 (415)
84 3vl1_A 26S proteasome regulato 96.5 1.1 3.7E-05 47.3 28.6 189 98-334 150-365 (420)
85 3mkq_A Coatomer beta'-subunit; 96.5 0.56 1.9E-05 54.6 26.7 191 98-339 66-264 (814)
86 3vl1_A 26S proteasome regulato 96.5 0.42 1.4E-05 50.5 23.5 193 156-390 108-324 (420)
87 4g56_B MGC81050 protein; prote 96.4 0.16 5.5E-06 53.5 19.9 188 156-389 150-344 (357)
88 3u4y_A Uncharacterized protein 96.4 0.55 1.9E-05 47.9 23.2 237 99-390 52-306 (331)
89 1p22_A F-BOX/WD-repeat protein 96.4 0.19 6.5E-06 54.2 20.4 189 152-390 138-327 (435)
90 1sq9_A Antiviral protein SKI8; 96.4 0.12 4.1E-06 54.3 18.2 203 100-339 82-327 (397)
91 2ojh_A Uncharacterized protein 96.3 0.11 3.9E-06 51.3 17.1 202 98-341 52-265 (297)
92 2ecf_A Dipeptidyl peptidase IV 96.3 0.29 9.8E-06 56.6 22.9 149 225-388 264-415 (741)
93 3g4e_A Regucalcin; six bladed 96.3 0.25 8.7E-06 50.5 20.1 236 89-373 13-262 (297)
94 2dg1_A DRP35, lactonase; beta 96.3 0.21 7.3E-06 51.3 19.6 251 98-387 55-315 (333)
95 2qc5_A Streptogramin B lactona 96.3 0.94 3.2E-05 45.1 24.0 188 98-340 72-265 (300)
96 2z3z_A Dipeptidyl aminopeptida 96.3 1.3 4.5E-05 50.7 28.0 153 223-390 234-393 (706)
97 3odt_A Protein DOA1; ubiquitin 96.3 0.55 1.9E-05 47.0 22.1 189 155-393 112-301 (313)
98 2ynn_A Coatomer subunit beta'; 96.3 0.75 2.6E-05 46.8 23.3 232 98-390 24-261 (304)
99 3scy_A Hypothetical bacterial 96.3 1 3.6E-05 46.7 24.8 251 101-387 15-290 (361)
100 4e54_B DNA damage-binding prot 96.3 0.067 2.3E-06 58.0 15.9 193 98-336 131-329 (435)
101 3pe7_A Oligogalacturonate lyas 96.2 0.36 1.2E-05 50.5 21.1 208 172-391 167-387 (388)
102 4aow_A Guanine nucleotide-bind 96.2 0.33 1.1E-05 49.4 20.1 237 98-390 97-339 (340)
103 3dwl_C Actin-related protein 2 96.2 0.095 3.3E-06 54.8 16.3 241 98-393 22-286 (377)
104 2pbi_B Guanine nucleotide-bind 96.2 0.91 3.1E-05 47.5 23.8 229 98-390 75-317 (354)
105 2vdu_B TRNA (guanine-N(7)-)-me 96.1 0.84 2.9E-05 49.3 24.1 112 156-289 160-276 (450)
106 2qc5_A Streptogramin B lactona 96.1 1.2 4.2E-05 44.2 26.6 225 98-386 30-258 (300)
107 3mmy_A MRNA export factor; mRN 96.1 1.5 5.1E-05 44.7 24.9 184 99-335 54-248 (368)
108 2hes_X YDR267CP; beta-propelle 96.1 0.68 2.3E-05 47.9 22.1 199 156-387 118-327 (330)
109 2xdw_A Prolyl endopeptidase; a 96.1 0.61 2.1E-05 54.0 23.9 263 96-390 81-370 (710)
110 4a2l_A BT_4663, two-component 96.1 0.3 1E-05 57.5 21.5 225 115-390 428-661 (795)
111 1yiq_A Quinohemoprotein alcoho 96.1 1.7 5.7E-05 50.5 27.5 128 93-239 65-200 (689)
112 1kb0_A Quinohemoprotein alcoho 96.1 0.8 2.7E-05 53.1 24.7 124 152-291 73-208 (677)
113 1vyh_C Platelet-activating fac 96.0 0.51 1.8E-05 50.6 21.6 229 98-390 119-371 (410)
114 2xdw_A Prolyl endopeptidase; a 96.0 0.92 3.2E-05 52.5 25.1 253 98-390 135-416 (710)
115 3jro_A Fusion protein of prote 96.0 0.15 5.2E-06 59.8 18.4 196 156-389 20-239 (753)
116 3k26_A Polycomb protein EED; W 96.0 0.14 4.7E-06 52.8 16.2 106 99-235 85-194 (366)
117 3iz6_a 40S ribosomal protein R 96.0 1.2 4.1E-05 47.0 23.9 197 157-389 170-376 (380)
118 4a2l_A BT_4663, two-component 96.0 0.56 1.9E-05 55.2 23.3 229 115-391 378-617 (795)
119 2ghs_A AGR_C_1268P; regucalcin 96.0 1 3.4E-05 46.7 22.9 192 99-340 61-266 (326)
120 2ecf_A Dipeptidyl peptidase IV 96.0 0.13 4.4E-06 59.6 17.5 262 98-389 47-370 (741)
121 3fvz_A Peptidyl-glycine alpha- 95.9 1.8 6.3E-05 44.6 29.4 238 114-389 69-323 (329)
122 4a11_B DNA excision repair pro 95.9 0.32 1.1E-05 50.8 18.9 237 98-390 111-367 (408)
123 1yfq_A Cell cycle arrest prote 95.9 1 3.5E-05 45.8 22.4 234 98-390 22-284 (342)
124 3fm0_A Protein CIAO1; WDR39,SG 95.9 0.58 2E-05 48.7 20.8 193 98-332 27-223 (345)
125 1nir_A Nitrite reductase; hemo 95.9 0.31 1E-05 55.0 19.8 194 174-390 249-460 (543)
126 1q7f_A NHL, brain tumor CG1071 95.9 1.6 5.5E-05 43.5 30.2 237 98-388 40-280 (286)
127 2pbi_B Guanine nucleotide-bind 95.9 2.1 7.1E-05 44.7 26.8 148 156-336 165-317 (354)
128 3v9f_A Two-component system se 95.9 0.41 1.4E-05 56.2 21.4 224 115-390 384-613 (781)
129 4a11_B DNA excision repair pro 95.9 0.48 1.7E-05 49.4 20.0 206 98-337 55-279 (408)
130 1ri6_A Putative isomerase YBHE 95.9 0.33 1.1E-05 49.4 18.2 185 174-387 61-261 (343)
131 1q7f_A NHL, brain tumor CG1071 95.8 1.7 5.9E-05 43.3 23.4 195 156-388 40-238 (286)
132 2aq5_A Coronin-1A; WD40 repeat 95.8 0.91 3.1E-05 48.0 22.0 200 156-390 93-301 (402)
133 3dr2_A Exported gluconolactona 95.8 0.88 3E-05 46.5 21.0 203 98-341 56-274 (305)
134 3azo_A Aminopeptidase; POP fam 95.7 0.47 1.6E-05 54.0 20.6 204 114-341 102-332 (662)
135 2pm7_B Protein transport prote 95.7 1.5 5.1E-05 44.3 22.6 240 98-392 20-290 (297)
136 4gqb_B Methylosome protein 50; 95.7 0.39 1.3E-05 50.5 18.3 199 152-390 88-291 (344)
137 3pe7_A Oligogalacturonate lyas 95.7 1.2 4.1E-05 46.4 22.1 199 114-342 60-281 (388)
138 2ad6_A Methanol dehydrogenase 95.6 0.81 2.8E-05 52.0 21.9 128 92-239 56-193 (571)
139 3sfz_A APAF-1, apoptotic pepti 95.6 0.1 3.5E-06 64.4 15.2 233 98-391 972-1210(1249)
140 1qks_A Cytochrome CD1 nitrite 95.5 0.9 3.1E-05 51.6 21.7 206 156-389 255-478 (567)
141 1pby_B Quinohemoprotein amine 95.5 1.2 4.1E-05 45.0 20.7 155 101-290 3-169 (337)
142 1qhu_A Protein (hemopexin); be 95.5 1.1 3.6E-05 49.6 21.2 188 156-388 158-385 (460)
143 3odt_A Protein DOA1; ubiquitin 95.5 1.5 5.2E-05 43.7 21.1 226 97-390 27-257 (313)
144 2pm9_A Protein WEB1, protein t 95.4 0.83 2.9E-05 47.9 19.9 200 156-390 78-296 (416)
145 1pby_B Quinohemoprotein amine 95.4 1.3 4.3E-05 44.8 20.7 235 99-390 46-312 (337)
146 4gga_A P55CDC, cell division c 95.4 3.5 0.00012 43.8 27.5 234 98-390 158-397 (420)
147 1erj_A Transcriptional repress 95.4 2.9 9.9E-05 44.2 24.0 196 98-337 134-344 (393)
148 1yiq_A Quinohemoprotein alcoho 95.3 4 0.00014 47.3 26.9 123 153-290 67-200 (689)
149 2pm9_A Protein WEB1, protein t 95.3 0.31 1.1E-05 51.3 16.1 240 98-390 78-339 (416)
150 3f3f_A Nucleoporin SEH1; struc 95.3 2.7 9.1E-05 42.1 25.1 194 98-334 22-249 (351)
151 3dwl_C Actin-related protein 2 95.3 0.33 1.1E-05 50.6 16.0 203 98-341 66-288 (377)
152 1yr2_A Prolyl oligopeptidase; 95.2 1.9 6.5E-05 50.2 23.9 260 96-389 116-396 (741)
153 4g56_B MGC81050 protein; prote 95.1 0.25 8.5E-06 52.1 14.3 206 156-390 53-260 (357)
154 1nir_A Nitrite reductase; hemo 95.1 2.1 7.2E-05 48.1 22.7 235 98-388 148-402 (543)
155 3fm0_A Protein CIAO1; WDR39,SG 95.1 0.31 1.1E-05 50.8 14.9 193 156-386 27-223 (345)
156 1pgu_A Actin interacting prote 95.0 1.3 4.5E-05 49.1 20.7 243 98-390 77-330 (615)
157 1kv9_A Type II quinohemoprotei 95.0 2.5 8.6E-05 48.8 23.6 130 92-239 60-195 (668)
158 3zwl_B Eukaryotic translation 95.0 1.4 4.9E-05 44.9 19.6 197 156-390 43-251 (369)
159 1vyh_C Platelet-activating fac 94.9 1.2 4E-05 47.7 19.4 149 156-339 119-270 (410)
160 2ad6_A Methanol dehydrogenase 94.9 3.1 0.00011 47.0 23.7 123 152-290 58-193 (571)
161 3c5m_A Oligogalacturonate lyas 94.9 0.93 3.2E-05 47.2 18.1 203 172-393 167-389 (396)
162 3e5z_A Putative gluconolactona 94.9 2.4 8.2E-05 42.6 20.6 192 156-389 39-247 (296)
163 3c5m_A Oligogalacturonate lyas 94.8 0.46 1.6E-05 49.6 15.5 201 114-341 168-391 (396)
164 1w6s_A Methanol dehydrogenase 94.8 2.9 9.8E-05 47.8 23.2 129 92-239 56-199 (599)
165 2bkl_A Prolyl endopeptidase; m 94.8 0.81 2.8E-05 52.8 18.8 213 98-340 131-357 (695)
166 3ei3_B DNA damage-binding prot 94.8 1.7 5.7E-05 45.3 19.7 188 100-336 87-284 (383)
167 1pgu_A Actin interacting prote 94.7 4.3 0.00015 44.8 24.1 198 156-390 77-285 (615)
168 2aq5_A Coronin-1A; WD40 repeat 94.7 0.92 3.2E-05 48.0 17.6 208 98-341 93-308 (402)
169 4ggc_A P55CDC, cell division c 94.7 3.9 0.00013 40.7 23.5 224 115-390 46-275 (318)
170 1rwi_B Serine/threonine-protei 94.7 1.3 4.6E-05 43.4 17.8 185 98-334 77-264 (270)
171 3no2_A Uncharacterized protein 94.6 4.3 0.00015 41.0 22.8 187 99-340 5-203 (276)
172 2ynn_A Coatomer subunit beta'; 94.6 1.8 6E-05 44.0 18.9 193 156-390 24-219 (304)
173 3ei3_B DNA damage-binding prot 94.5 2.8 9.7E-05 43.5 20.8 190 158-390 87-284 (383)
174 3gre_A Serine/threonine-protei 94.5 1.4 4.8E-05 46.9 18.6 155 207-390 181-361 (437)
175 4e54_B DNA damage-binding prot 94.4 0.27 9.3E-06 53.1 12.9 194 156-390 131-329 (435)
176 3g4e_A Regucalcin; six bladed 94.4 1.2 4.1E-05 45.3 17.1 213 156-412 24-251 (297)
177 2vdu_B TRNA (guanine-N(7)-)-me 94.3 2.9 0.0001 44.9 20.9 160 157-339 210-398 (450)
178 1yr2_A Prolyl oligopeptidase; 94.3 2.1 7.1E-05 49.8 20.9 213 98-340 173-401 (741)
179 1i84_S Smooth muscle myosin he 94.3 0.072 2.5E-06 66.0 8.6 89 585-673 883-971 (1184)
180 3ol1_A Vimentin; structural ge 94.2 0.4 1.4E-05 42.8 11.2 98 564-675 11-115 (119)
181 2mad_H Methylamine dehydrogena 94.2 6.7 0.00023 41.6 29.6 86 309-409 278-369 (373)
182 1flg_A Protein (quinoprotein e 94.2 7.3 0.00025 44.1 24.6 123 93-239 63-201 (582)
183 3iuj_A Prolyl endopeptidase; h 94.2 3.8 0.00013 47.3 22.7 210 98-341 139-366 (693)
184 2bkl_A Prolyl endopeptidase; m 94.2 1.3 4.4E-05 51.2 18.6 257 97-388 78-351 (695)
185 3dm0_A Maltose-binding peripla 94.1 3.5 0.00012 47.3 22.2 192 98-338 441-636 (694)
186 3frx_A Guanine nucleotide-bind 94.1 5.8 0.0002 40.4 23.3 230 98-388 76-317 (319)
187 3lrv_A PRE-mRNA-splicing facto 94.1 6.1 0.00021 40.5 23.0 191 98-336 47-246 (343)
188 1jmx_B Amine dehydrogenase; ox 94.1 0.84 2.9E-05 46.5 15.1 159 156-339 10-180 (349)
189 3sfz_A APAF-1, apoptotic pepti 94.0 5.1 0.00018 49.1 24.7 107 98-237 626-736 (1249)
190 2hes_X YDR267CP; beta-propelle 94.0 6.1 0.00021 40.4 25.6 242 97-391 23-283 (330)
191 3bg1_A Protein SEC13 homolog; 94.0 1.1 3.6E-05 46.0 15.8 112 98-238 24-142 (316)
192 3lrv_A PRE-mRNA-splicing facto 94.0 3.2 0.00011 42.7 19.6 191 156-390 47-246 (343)
193 1i84_S Smooth muscle myosin he 94.0 0.062 2.1E-06 66.6 7.2 65 573-637 885-949 (1184)
194 1pjx_A Dfpase, DIISOPROPYLFLUO 94.0 2.2 7.4E-05 42.9 17.9 196 99-335 83-300 (314)
195 2xyi_A Probable histone-bindin 93.9 0.61 2.1E-05 50.2 14.3 146 159-334 196-353 (430)
196 1qks_A Cytochrome CD1 nitrite 93.9 2.9 9.9E-05 47.4 20.4 201 173-390 320-540 (567)
197 3dm0_A Maltose-binding peripla 93.8 5.8 0.0002 45.4 23.2 188 156-390 441-634 (694)
198 2pm7_B Protein transport prote 93.6 2.8 9.4E-05 42.3 18.0 199 99-341 67-293 (297)
199 1npe_A Nidogen, entactin; glyc 93.6 6.2 0.00021 39.0 25.0 198 92-339 39-243 (267)
200 3no2_A Uncharacterized protein 93.4 2.8 9.4E-05 42.5 17.4 186 156-390 4-197 (276)
201 3oja_B Anopheles plasmodium-re 93.2 0.021 7.3E-07 65.3 1.1 57 651-707 524-580 (597)
202 1yfq_A Cell cycle arrest prote 93.0 5.5 0.00019 40.2 19.2 144 156-334 22-179 (342)
203 2oiz_A Aromatic amine dehydrog 93.0 10 0.00035 39.7 23.0 66 309-389 265-335 (361)
204 3iz6_a 40S ribosomal protein R 93.0 9.1 0.00031 40.0 21.4 152 156-334 217-375 (380)
205 1kv9_A Type II quinohemoprotei 92.9 16 0.00056 41.9 25.6 123 152-290 62-195 (668)
206 2fxo_A Myosin heavy chain, car 92.8 0.96 3.3E-05 41.0 11.4 88 569-670 37-124 (129)
207 3i2n_A WD repeat-containing pr 92.8 1.6 5.4E-05 44.5 14.6 148 98-284 128-291 (357)
208 3f3f_A Nucleoporin SEH1; struc 92.7 8.5 0.00029 38.2 20.6 28 309-341 317-345 (351)
209 1w6s_A Methanol dehydrogenase 92.7 8.3 0.00028 43.9 21.7 124 152-291 58-200 (599)
210 3fvz_A Peptidyl-glycine alpha- 92.6 10 0.00035 38.8 24.3 208 98-334 101-322 (329)
211 3hrp_A Uncharacterized protein 92.4 13 0.00046 39.7 25.9 201 98-341 141-361 (409)
212 2ymu_A WD-40 repeat protein; u 92.4 9.4 0.00032 41.9 21.4 147 156-339 396-544 (577)
213 4aow_A Guanine nucleotide-bind 92.3 10 0.00034 38.0 24.6 189 156-390 97-288 (340)
214 2dfs_A Myosin-5A; myosin-V, in 92.3 0.043 1.5E-06 67.1 2.0 56 620-679 958-1013(1080)
215 1erj_A Transcriptional repress 92.2 11 0.00038 39.6 20.9 153 207-390 134-289 (393)
216 1pex_A Collagenase-3, MMP-13; 92.2 9.1 0.00031 37.3 18.4 153 151-339 28-197 (207)
217 2dg1_A DRP35, lactonase; beta 92.0 2.2 7.7E-05 43.4 14.7 155 156-334 55-213 (333)
218 1ic2_A Tropomyosin alpha chain 92.0 0.95 3.3E-05 37.5 9.4 70 571-640 4-73 (81)
219 1flg_A Protein (quinoprotein e 91.9 19 0.00065 40.7 23.4 121 152-289 64-200 (582)
220 2ymu_A WD-40 repeat protein; u 91.8 17 0.00059 39.7 24.8 182 156-387 355-538 (577)
221 4h5i_A Guanine nucleotide-exch 91.8 14 0.00047 38.6 20.8 182 115-334 158-343 (365)
222 3ott_A Two-component system se 91.8 23 0.00078 41.0 24.8 190 98-341 73-267 (758)
223 1qhu_A Protein (hemopexin); be 91.6 12 0.0004 41.2 20.4 101 156-285 107-216 (460)
224 3i2n_A WD repeat-containing pr 91.6 6.8 0.00023 39.6 17.8 194 157-390 31-245 (357)
225 2xyi_A Probable histone-bindin 91.6 2.4 8.3E-05 45.4 14.9 146 210-389 196-354 (430)
226 3b7f_A Glycosyl hydrolase, BNR 91.6 16 0.00053 38.6 26.0 234 74-341 43-329 (394)
227 2xzm_R RACK1; ribosome, transl 91.5 14 0.00047 37.8 23.3 145 156-334 87-244 (343)
228 2p4o_A Hypothetical protein; p 91.3 14 0.00047 37.5 24.3 216 73-340 19-247 (306)
229 2fp8_A Strictosidine synthase; 91.2 13 0.00046 37.7 19.6 207 92-335 83-314 (322)
230 3u59_A Tropomyosin beta chain; 91.1 1.1 3.6E-05 38.8 9.1 71 570-640 13-83 (101)
231 3u1c_A Tropomyosin alpha-1 cha 90.9 1.1 3.8E-05 38.7 9.0 67 572-638 15-81 (101)
232 2cn3_A Xyloglucanase, beta-1,4 90.6 30 0.001 40.2 30.6 268 72-373 9-322 (737)
233 3bg1_A Protein SEC13 homolog; 90.6 3.3 0.00011 42.3 14.2 199 99-342 71-302 (316)
234 3b7f_A Glycosyl hydrolase, BNR 90.6 19 0.00066 37.9 23.2 192 116-341 33-269 (394)
235 3o4h_A Acylamino-acid-releasin 90.4 10 0.00035 42.1 19.3 154 157-338 75-231 (582)
236 1k32_A Tricorn protease; prote 90.3 10 0.00035 45.8 20.4 237 96-390 211-463 (1045)
237 3c75_H MADH, methylamine dehyd 90.1 17 0.00057 39.5 19.8 120 99-236 85-212 (426)
238 3gre_A Serine/threonine-protei 89.9 21 0.00073 37.4 20.6 153 156-336 181-361 (437)
239 3iuj_A Prolyl endopeptidase; h 89.9 32 0.0011 39.4 31.1 147 173-343 259-414 (693)
240 1itv_A MMP9; adaptive molecula 89.8 7.7 0.00026 37.4 15.2 151 151-337 11-177 (195)
241 3k26_A Polycomb protein EED; W 89.8 9.5 0.00033 38.5 17.0 141 174-335 45-193 (366)
242 2ocy_A RAB guanine nucleotide 89.8 0.6 2.1E-05 43.4 6.7 120 571-707 4-151 (154)
243 3dr2_A Exported gluconolactona 89.8 5.1 0.00017 40.6 14.8 155 156-336 56-226 (305)
244 3mmy_A MRNA export factor; mRN 89.8 18 0.00061 36.4 20.5 144 157-336 54-201 (368)
245 4ggc_A P55CDC, cell division c 89.7 17 0.00057 35.9 26.5 234 98-388 78-315 (318)
246 2gop_A Trilobed protease; beta 89.5 19 0.00065 36.4 21.7 141 172-340 151-297 (347)
247 1k32_A Tricorn protease; prote 89.5 43 0.0015 40.3 30.9 197 115-341 34-242 (1045)
248 2ghs_A AGR_C_1268P; regucalcin 89.1 13 0.00043 38.2 17.3 145 156-333 60-209 (326)
249 4h5i_A Guanine nucleotide-exch 88.8 24 0.00083 36.6 24.7 144 224-390 157-302 (365)
250 1c1g_A Tropomyosin; contractIl 88.7 0.68 2.3E-05 46.0 6.9 42 662-703 242-283 (284)
251 2fp8_A Strictosidine synthase; 88.4 23 0.00079 35.9 21.9 208 150-390 83-315 (322)
252 2mad_H Methylamine dehydrogena 88.2 28 0.00097 36.6 25.6 119 156-288 32-160 (373)
253 3ott_A Two-component system se 88.2 5.1 0.00017 46.6 15.0 166 98-314 482-649 (758)
254 3o4h_A Acylamino-acid-releasin 87.6 21 0.00072 39.5 19.1 201 152-391 28-230 (582)
255 2p4o_A Hypothetical protein; p 87.2 27 0.00091 35.2 19.2 183 98-318 82-278 (306)
256 1nr0_A Actin interacting prote 87.1 42 0.0014 37.5 22.1 193 158-390 161-357 (611)
257 3u1c_A Tropomyosin alpha-1 cha 86.7 2 6.8E-05 37.1 7.6 58 571-628 42-99 (101)
258 1pex_A Collagenase-3, MMP-13; 86.2 13 0.00045 36.2 14.3 154 202-390 28-194 (207)
259 1c1g_A Tropomyosin; contractIl 86.2 0.68 2.3E-05 46.0 5.1 32 572-603 5-36 (284)
260 3vkg_A Dynein heavy chain, cyt 85.4 1 3.5E-05 60.5 7.4 25 583-607 1983-2007(3245)
261 2dfs_A Myosin-5A; myosin-V, in 85.3 3.7 0.00013 50.1 11.8 47 589-635 972-1018(1080)
262 1xfd_A DIP, dipeptidyl aminope 85.3 32 0.0011 39.0 19.4 66 225-291 229-296 (723)
263 3c75_H MADH, methylamine dehyd 85.2 36 0.0012 36.8 18.7 121 156-288 84-213 (426)
264 2gop_A Trilobed protease; beta 85.1 34 0.0012 34.4 23.4 187 112-341 41-258 (347)
265 1ic2_A Tropomyosin alpha chain 84.7 5.5 0.00019 32.8 9.1 70 569-638 9-78 (81)
266 1itv_A MMP9; adaptive molecula 84.5 29 0.001 33.2 16.6 153 93-286 11-176 (195)
267 2efr_A General control protein 84.4 2.2 7.7E-05 39.7 7.2 73 584-663 81-153 (155)
268 1sqj_A OXG-RCBH, oligoxylogluc 83.9 73 0.0025 37.3 30.9 268 73-372 3-315 (789)
269 2no2_A HIP-I, huntingtin-inter 83.6 10 0.00035 33.0 10.7 30 576-605 4-33 (107)
270 1xfd_A DIP, dipeptidyl aminope 83.5 11 0.00037 43.0 14.3 110 174-292 38-151 (723)
271 3a0f_A Xyloglucanase; beta-pro 83.2 76 0.0026 36.9 26.6 242 72-342 8-292 (763)
272 3na7_A HP0958; flagellar bioge 83.1 2.9 9.9E-05 42.3 8.2 33 574-606 54-86 (256)
273 3vkg_A Dynein heavy chain, cyt 83.0 1.6 5.6E-05 58.6 7.7 84 596-681 1954-2038(3245)
274 1ci6_A Transcription factor AT 82.6 2.7 9.3E-05 33.0 6.0 55 600-668 8-62 (63)
275 3hnw_A Uncharacterized protein 82.4 9 0.00031 34.9 10.3 75 568-643 34-110 (138)
276 3u59_A Tropomyosin beta chain; 82.4 3.3 0.00011 35.7 7.1 56 572-627 43-98 (101)
277 3na7_A HP0958; flagellar bioge 82.4 7.5 0.00026 39.2 11.0 70 569-638 14-83 (256)
278 3frx_A Guanine nucleotide-bind 82.4 44 0.0015 33.6 20.2 146 207-390 76-229 (319)
279 3c7x_A Matrix metalloproteinas 82.3 17 0.00059 34.9 13.1 153 151-336 10-177 (196)
280 2oiz_A Aromatic amine dehydrog 81.0 41 0.0014 34.9 16.8 121 157-288 16-144 (361)
281 3uux_B Mitochondrial division 80.6 3.9 0.00013 40.4 7.6 75 548-623 132-206 (242)
282 1gen_A Gelatinase A; hydrolase 80.6 45 0.0015 32.6 17.1 154 150-336 34-204 (218)
283 3ni0_A Bone marrow stromal ant 80.2 7 0.00024 32.8 7.8 18 584-601 22-39 (99)
284 2xe4_A Oligopeptidase B; hydro 80.1 76 0.0026 36.7 20.1 142 173-332 247-398 (751)
285 3o0z_A RHO-associated protein 79.9 8.1 0.00028 36.2 9.2 102 574-675 56-158 (168)
286 1su3_A Interstitial collagenas 79.9 49 0.0017 36.1 17.2 156 151-340 267-438 (450)
287 3ju4_A Endo-N-acetylneuraminid 79.5 71 0.0024 34.3 21.4 196 72-282 268-512 (670)
288 2e7s_A RAB guanine nucleotide 79.5 3 0.0001 37.8 5.9 92 592-703 44-135 (135)
289 1npe_A Nidogen, entactin; glyc 79.0 50 0.0017 32.2 26.4 196 150-391 39-241 (267)
290 3hnw_A Uncharacterized protein 78.9 8.3 0.00028 35.2 8.8 61 579-639 74-134 (138)
291 3o0z_A RHO-associated protein 78.3 3.3 0.00011 38.9 5.9 100 582-705 8-117 (168)
292 1nr0_A Actin interacting prote 78.0 92 0.0031 34.7 26.8 64 309-388 459-522 (611)
293 3sjl_D Methylamine dehydrogena 77.9 77 0.0026 33.8 19.1 121 156-288 44-173 (386)
294 3ba0_A Macrophage metalloelast 77.8 70 0.0024 33.8 17.2 155 151-340 185-356 (365)
295 2akf_A Coronin-1A; coiled coil 77.6 1.6 5.4E-05 28.3 2.4 22 654-675 3-24 (32)
296 1n7d_A LDL receptor, low-densi 77.4 33 0.0011 39.6 15.7 154 155-339 463-619 (699)
297 3a7p_A Autophagy protein 16; c 77.3 1.3 4.5E-05 40.8 2.9 84 589-672 30-125 (152)
298 2oaj_A Protein SNI1; WD40 repe 77.0 1.3E+02 0.0043 35.7 26.8 243 98-386 28-310 (902)
299 1su3_A Interstitial collagenas 77.0 31 0.001 37.7 14.4 151 202-390 267-434 (450)
300 3c7x_A Matrix metalloproteinas 75.9 32 0.0011 33.0 12.7 153 202-390 10-177 (196)
301 2hz6_A Endoplasmic reticulum t 75.2 1.8 6E-05 45.9 3.8 143 153-339 6-156 (369)
302 2p9w_A MAL S 1 allergenic prot 75.0 49 0.0017 34.7 14.6 142 156-319 147-305 (334)
303 3hxj_A Pyrrolo-quinoline quino 74.5 70 0.0024 31.6 17.6 139 155-339 106-250 (330)
304 3hrp_A Uncharacterized protein 74.0 95 0.0032 32.9 25.9 151 156-335 141-299 (409)
305 3oja_B Anopheles plasmodium-re 73.4 9.5 0.00032 43.0 9.6 12 380-391 346-357 (597)
306 3iv1_A Tumor susceptibility ge 73.1 26 0.00089 28.5 9.2 71 567-637 4-75 (78)
307 1go4_E MAD1 (mitotic arrest de 73.1 8.5 0.00029 33.0 6.7 72 565-636 11-96 (100)
308 2v71_A Nuclear distribution pr 72.8 42 0.0014 32.1 12.2 72 563-634 7-82 (189)
309 3oyo_A Hemopexin fold protein 72.0 77 0.0026 31.0 14.8 105 155-283 69-197 (225)
310 1cxz_B Protein (PKN); protein- 71.9 10 0.00035 31.6 6.7 58 578-635 23-83 (86)
311 3v64_C Agrin; beta propeller, 71.4 98 0.0034 31.9 25.6 186 98-334 84-275 (349)
312 1n7d_A LDL receptor, low-densi 71.3 34 0.0012 39.5 13.8 219 115-390 387-616 (699)
313 2ece_A 462AA long hypothetical 71.3 1.2E+02 0.0042 33.0 25.9 171 156-341 95-296 (462)
314 4a5s_A Dipeptidyl peptidase 4 71.1 51 0.0018 37.8 15.3 107 174-292 37-149 (740)
315 3he5_B Synzip2; heterodimeric 71.0 11 0.00037 26.7 5.6 45 569-634 6-50 (52)
316 2ece_A 462AA long hypothetical 70.9 1.3E+02 0.0043 33.0 20.0 177 98-292 95-297 (462)
317 2pms_C Pneumococcal surface pr 70.7 20 0.00069 31.8 8.7 57 617-674 63-120 (125)
318 3swk_A Vimentin; cytoskeleton, 70.7 15 0.00052 30.5 7.7 56 571-626 5-60 (86)
319 2dq0_A Seryl-tRNA synthetase; 70.0 12 0.00039 41.2 8.8 41 611-651 72-113 (455)
320 3hxj_A Pyrrolo-quinoline quino 69.6 91 0.0031 30.8 17.5 177 97-339 106-290 (330)
321 3oja_A Leucine-rich immune mol 69.5 3.7 0.00013 45.3 4.8 100 569-680 357-472 (487)
322 3m0c_C LDL receptor, low-densi 69.4 1.8E+02 0.0061 34.1 29.5 219 115-390 405-634 (791)
323 1z68_A Fibroblast activation p 68.3 1.6E+02 0.0054 33.1 19.8 152 173-335 224-394 (719)
324 3ju4_A Endo-N-acetylneuraminid 68.1 1.3E+02 0.0046 32.2 20.7 209 175-392 260-518 (670)
325 1wle_A Seryl-tRNA synthetase; 68.0 16 0.00056 40.5 9.5 39 613-651 121-160 (501)
326 3ter_A Mammalian stromal inter 67.8 19 0.00064 32.5 8.0 59 567-625 39-107 (136)
327 2zqm_A Prefoldin beta subunit 67.4 25 0.00084 30.5 8.9 34 568-601 15-48 (117)
328 3v65_B Low-density lipoprotein 67.3 1.3E+02 0.0043 31.6 25.7 189 98-334 127-318 (386)
329 1z68_A Fibroblast activation p 67.2 68 0.0023 36.3 15.2 151 224-389 224-394 (719)
330 1gen_A Gelatinase A; hydrolase 67.2 95 0.0033 30.1 17.5 156 202-390 35-204 (218)
331 3cvf_A Homer-3, homer protein 66.4 30 0.001 28.3 8.3 59 569-634 16-74 (79)
332 2xe4_A Oligopeptidase B; hydro 66.3 94 0.0032 35.9 16.3 151 113-293 294-467 (751)
333 3cve_A Homer protein homolog 1 66.3 34 0.0012 27.4 8.4 56 572-634 6-68 (72)
334 2efr_A General control protein 66.1 9.3 0.00032 35.5 5.9 90 585-674 26-129 (155)
335 2v71_A Nuclear distribution pr 66.1 13 0.00044 35.7 7.1 77 565-641 41-121 (189)
336 2oaj_A Protein SNI1; WD40 repe 65.9 2.1E+02 0.0073 33.7 23.9 196 156-390 28-244 (902)
337 3bas_A Myosin heavy chain, str 65.4 30 0.001 28.8 8.5 43 574-616 15-57 (89)
338 2xu6_A MDV1 coiled coil; prote 65.0 10 0.00035 30.3 5.1 51 607-671 20-70 (72)
339 1ses_A Seryl-tRNA synthetase; 64.8 15 0.00051 39.9 8.3 67 585-651 40-108 (421)
340 3p5b_L Low density lipoprotein 64.7 1.4E+02 0.0049 31.3 27.9 220 114-390 92-322 (400)
341 1wt6_A Myotonin-protein kinase 64.6 24 0.00082 28.8 7.3 52 575-633 19-70 (81)
342 1ijq_A LDL receptor, low-densi 64.6 1.2E+02 0.0042 30.5 29.5 220 114-390 10-240 (316)
343 3vu4_A KMHSV2; beta-propeller 64.5 1.3E+02 0.0044 30.7 22.8 185 156-390 70-273 (355)
344 1ijq_A LDL receptor, low-densi 64.2 1.3E+02 0.0043 30.5 26.4 197 91-335 32-239 (316)
345 1hxn_A Hemopexin, HPX; heme, b 64.2 43 0.0015 32.8 10.8 142 155-334 27-197 (219)
346 2p22_A Suppressor protein STP2 64.0 63 0.0022 30.4 11.3 68 567-634 21-89 (174)
347 2fxo_A Myosin heavy chain, car 63.7 22 0.00076 31.8 8.0 60 568-627 64-123 (129)
348 1fxk_A Prefoldin; archaeal pro 63.6 34 0.0012 29.1 8.9 34 568-601 10-43 (107)
349 1d7m_A Cortexillin I; coiled-c 62.3 66 0.0023 26.6 10.4 76 576-672 21-96 (101)
350 3ba0_A Macrophage metalloelast 62.3 1.6E+02 0.0054 31.0 16.3 157 93-290 185-356 (365)
351 3bas_A Myosin heavy chain, str 61.9 11 0.00037 31.6 5.1 53 583-635 10-62 (89)
352 3s4r_A Vimentin; alpha-helix, 61.6 33 0.0011 28.9 8.1 21 570-590 20-40 (93)
353 2j04_A TAU60, YPL007P, hypothe 60.7 2.2E+02 0.0075 32.1 20.0 180 156-376 96-290 (588)
354 3vu4_A KMHSV2; beta-propeller 60.2 1.5E+02 0.0052 30.1 24.8 68 256-335 203-272 (355)
355 2b9c_A Striated-muscle alpha t 60.0 26 0.0009 32.2 7.8 58 578-635 50-107 (147)
356 3oyo_A Hemopexin fold protein 59.7 1.3E+02 0.0045 29.3 17.8 146 155-333 12-197 (225)
357 2jee_A YIIU; FTSZ, septum, coi 59.7 30 0.001 28.4 7.1 44 574-617 28-71 (81)
358 3m0c_C LDL receptor, low-densi 59.5 2.6E+02 0.009 32.6 26.5 188 98-335 435-633 (791)
359 3qne_A Seryl-tRNA synthetase, 59.3 26 0.00089 38.6 9.0 39 613-651 76-115 (485)
360 2zvf_A Alanyl-tRNA synthetase; 59.1 12 0.00043 34.8 5.7 68 611-684 35-107 (171)
361 3k6s_A Integrin alpha-X; cell 59.0 1.2E+02 0.004 37.0 15.6 184 149-337 336-545 (1095)
362 3v65_B Low-density lipoprotein 58.9 1.8E+02 0.006 30.4 27.0 218 114-390 96-320 (386)
363 3s4r_A Vimentin; alpha-helix, 58.9 45 0.0015 28.1 8.5 82 568-673 11-93 (93)
364 2v4h_A NF-kappa-B essential mo 58.6 24 0.00082 30.6 6.6 18 619-636 42-59 (110)
365 2xzm_R RACK1; ribosome, transl 58.5 1.5E+02 0.0053 29.6 22.8 145 207-388 87-244 (343)
366 1cii_A Colicin IA; bacteriocin 57.7 33 0.0011 36.9 8.9 49 587-635 356-411 (602)
367 3k6s_A Integrin alpha-X; cell 57.5 1.9E+02 0.0065 35.2 17.1 187 199-389 335-542 (1095)
368 3mq7_A Bone marrow stromal ant 57.4 38 0.0013 29.6 7.7 52 584-635 29-91 (121)
369 3tc9_A Hypothetical hydrolase; 57.3 1.5E+02 0.0051 31.6 14.8 144 156-333 149-300 (430)
370 3dw8_B Serine/threonine-protei 57.0 1.8E+02 0.0061 29.9 18.6 73 254-337 183-261 (447)
371 3teq_A Stromal interaction mol 56.9 38 0.0013 28.9 7.6 42 567-608 8-49 (101)
372 2dq3_A Seryl-tRNA synthetase; 55.7 12 0.00039 40.8 5.4 69 583-651 40-112 (425)
373 3k29_A Putative uncharacterize 55.0 51 0.0018 30.7 8.7 85 564-649 69-159 (169)
374 4d9s_A UVB-resistance protein 54.9 2.1E+02 0.0072 30.1 24.7 18 148-165 130-148 (406)
375 4emc_A Monopolin complex subun 54.8 33 0.0011 32.7 7.5 62 574-635 21-85 (190)
376 2v66_B Nuclear distribution pr 54.5 43 0.0015 29.2 7.7 59 569-631 52-110 (111)
377 3sjl_D Methylamine dehydrogena 54.1 2.2E+02 0.0076 30.1 23.2 73 309-392 291-367 (386)
378 3ol1_A Vimentin; structural ge 53.6 52 0.0018 28.9 8.4 59 597-669 23-81 (119)
379 3dw8_B Serine/threonine-protei 53.2 1.7E+02 0.0059 30.1 14.3 71 309-390 188-260 (447)
380 3ghg_A Fibrinogen alpha chain; 53.1 24 0.00081 38.8 7.1 114 576-703 60-188 (562)
381 3uux_B Mitochondrial division 52.9 52 0.0018 32.5 8.9 86 563-671 141-226 (242)
382 1mda_H Methylamine dehydrogena 52.6 2E+02 0.0067 30.2 14.4 277 99-413 32-368 (368)
383 3ljm_A Coil Ser L9C; de novo d 52.4 18 0.00063 22.9 3.6 8 597-604 4-11 (31)
384 2oit_A Nucleoporin 214KDA; NH2 52.1 2.4E+02 0.0081 29.9 20.7 61 208-284 162-223 (434)
385 2b9c_A Striated-muscle alpha t 52.0 21 0.00074 32.8 5.8 68 575-642 5-72 (147)
386 3vp9_A General transcriptional 50.9 13 0.00043 31.4 3.6 46 612-667 40-85 (92)
387 1dip_A Delta-sleep-inducing pe 50.3 4.7 0.00016 32.2 0.8 32 620-665 13-44 (78)
388 1sqj_A OXG-RCBH, oligoxylogluc 50.2 3.5E+02 0.012 31.3 26.4 246 72-341 45-340 (789)
389 2xzr_A Immunoglobulin-binding 50.1 99 0.0034 25.9 8.7 73 587-666 30-106 (114)
390 2eqb_B RAB guanine nucleotide 49.9 49 0.0017 28.1 7.1 84 578-670 10-96 (97)
391 4hvt_A Ritya.17583.B, post-pro 49.9 3.5E+02 0.012 31.1 18.6 104 222-339 267-386 (711)
392 3lss_A Seryl-tRNA synthetase; 49.6 44 0.0015 36.9 8.8 13 639-651 136-148 (484)
393 2i1j_A Moesin; FERM, coiled-co 49.6 8.2 0.00028 43.7 3.1 45 584-628 367-411 (575)
394 3sre_A PON1, serum paraoxonase 49.5 2.5E+02 0.0085 29.3 14.8 148 172-334 82-252 (355)
395 3iv1_A Tumor susceptibility ge 49.3 71 0.0024 26.0 7.7 59 584-642 15-73 (78)
396 2b5u_A Colicin E3; high resolu 49.3 1.4E+02 0.005 32.5 12.3 40 569-608 300-342 (551)
397 2no2_A HIP-I, huntingtin-inter 49.2 41 0.0014 29.1 6.8 13 662-674 87-99 (107)
398 3bbp_D GRIP and coiled-coil do 49.1 11 0.00036 29.8 2.6 29 612-640 40-68 (71)
399 2ke4_A CDC42-interacting prote 48.6 35 0.0012 29.1 6.2 64 572-635 14-82 (98)
400 2wt7_B Transcription factor MA 48.4 87 0.003 26.2 8.3 61 574-634 22-88 (90)
401 3ibp_A Chromosome partition pr 47.6 29 0.00098 35.4 6.3 87 596-686 5-94 (302)
402 3ljm_A Coil Ser L9C; de novo d 47.4 28 0.00096 22.1 3.8 24 612-635 5-28 (31)
403 4dk0_A Putative MACA; alpha-ha 47.4 44 0.0015 34.9 8.3 35 571-605 68-102 (369)
404 1jof_A Carboxy-CIS,CIS-muconat 46.5 2.5E+02 0.0084 28.4 17.9 67 160-237 5-74 (365)
405 2w83_C C-JUN-amino-terminal ki 46.5 38 0.0013 27.3 5.5 54 569-623 20-73 (77)
406 3lp9_A LS-24; SEED albumin, pl 46.2 1.5E+02 0.005 29.0 11.3 61 259-335 129-202 (227)
407 2ic6_A Nucleocapsid protein; h 46.0 74 0.0025 25.8 7.2 27 575-601 7-33 (78)
408 3q8t_A Beclin-1; autophagy, AT 46.0 71 0.0024 27.0 7.7 32 606-637 23-54 (96)
409 4hvt_A Ritya.17583.B, post-pro 45.4 2.7E+02 0.0091 32.1 15.1 203 168-392 151-385 (711)
410 3mq9_A Bone marrow stromal ant 45.3 57 0.002 35.4 9.1 52 584-635 401-456 (471)
411 3q8t_A Beclin-1; autophagy, AT 45.3 64 0.0022 27.3 7.3 10 666-675 69-78 (96)
412 3mq9_A Bone marrow stromal ant 45.3 74 0.0025 34.5 10.0 21 655-675 448-468 (471)
413 1ck7_A Protein (gelatinase A); 45.2 91 0.0031 35.5 10.8 157 202-390 448-617 (631)
414 3p5b_L Low density lipoprotein 45.1 2.9E+02 0.01 28.9 26.6 196 92-335 115-321 (400)
415 2k48_A Nucleoprotein; viral pr 45.1 96 0.0033 26.5 8.1 49 570-619 32-89 (107)
416 4gq1_A NUP37; propeller, trans 44.2 2.8E+02 0.0096 28.4 14.2 205 156-390 100-350 (393)
417 1zbt_A RF-1, peptide chain rel 44.2 31 0.0011 36.5 6.2 55 574-628 18-80 (371)
418 1ck7_A Protein (gelatinase A); 44.2 1.2E+02 0.0039 34.7 11.4 153 150-335 447-616 (631)
419 2eqb_B RAB guanine nucleotide 44.1 51 0.0017 28.0 6.3 52 584-635 30-89 (97)
420 1go4_E MAD1 (mitotic arrest de 43.4 71 0.0024 27.3 7.1 76 609-706 13-96 (100)
421 3a0f_A Xyloglucanase; beta-pro 43.2 4.4E+02 0.015 30.4 22.6 216 99-340 88-351 (763)
422 4f61_I Stathmin-like domain R4 43.0 95 0.0032 30.6 9.0 34 569-602 45-78 (240)
423 2jee_A YIIU; FTSZ, septum, coi 42.6 1.4E+02 0.0048 24.4 9.3 67 566-632 6-72 (81)
424 1m1j_C Fibrinogen gamma chain; 42.6 1.5E+02 0.0052 31.8 11.4 25 578-602 36-60 (409)
425 3tnu_B Keratin, type II cytosk 42.1 89 0.003 27.7 8.2 29 569-597 46-74 (129)
426 2b5u_A Colicin E3; high resolu 42.1 44 0.0015 36.4 7.0 54 566-619 388-441 (551)
427 3ghg_A Fibrinogen alpha chain; 42.0 39 0.0013 37.1 6.6 43 612-661 114-156 (562)
428 3v64_C Agrin; beta propeller, 42.0 3E+02 0.01 28.1 29.1 217 115-390 54-277 (349)
429 3iox_A AGI/II, PA; alpha helix 41.8 95 0.0033 33.9 9.6 33 566-598 27-59 (497)
430 1cii_A Colicin IA; bacteriocin 41.7 1E+02 0.0035 33.3 9.5 57 574-630 364-420 (602)
431 4d9s_A UVB-resistance protein 41.6 3.3E+02 0.011 28.5 15.9 19 250-268 338-356 (406)
432 3mov_A Lamin-B1; LMNB1, B-type 41.0 45 0.0015 28.2 5.6 26 571-596 10-35 (95)
433 2ic9_A Nucleocapsid protein; h 40.8 86 0.0029 26.4 7.1 38 575-613 7-53 (96)
434 1t2k_D Cyclic-AMP-dependent tr 39.9 48 0.0016 25.4 5.2 29 600-628 7-35 (61)
435 3ter_A Mammalian stromal inter 39.6 1.3E+02 0.0045 27.0 8.6 60 606-675 50-115 (136)
436 3iyk_A VP5; icosahedral virus; 39.5 49 0.0017 36.0 6.9 42 585-626 91-132 (526)
437 1m1j_B Fibrinogen beta chain; 38.9 53 0.0018 35.9 7.2 102 588-706 86-189 (464)
438 3qh9_A Liprin-beta-2; coiled-c 38.8 1.4E+02 0.0049 24.2 7.9 56 576-631 22-77 (81)
439 1t3j_A Mitofusin 1; coiled coi 38.7 26 0.0009 29.7 3.7 52 609-671 41-92 (96)
440 3fpp_A Macrolide-specific effl 38.5 89 0.0031 32.1 8.9 35 570-604 66-100 (341)
441 3tnu_A Keratin, type I cytoske 38.4 1.1E+02 0.0037 27.2 8.2 34 568-601 47-80 (131)
442 3gpv_A Transcriptional regulat 38.2 83 0.0029 28.5 7.5 71 580-650 70-144 (148)
443 4fi5_A Nucleoprotein; structur 38.1 1.1E+02 0.0038 26.4 7.5 60 575-638 24-92 (113)
444 2wt7_A Proto-oncogene protein 38.1 1.1E+02 0.0039 23.5 7.2 37 599-635 7-43 (63)
445 1l8d_A DNA double-strand break 37.7 1.5E+02 0.0052 25.1 8.9 71 569-639 13-95 (112)
446 1hjb_A Ccaat/enhancer binding 37.3 96 0.0033 25.7 6.9 14 655-668 62-75 (87)
447 2i1j_A Moesin; FERM, coiled-co 37.2 19 0.00065 40.7 3.5 42 597-638 352-393 (575)
448 3ryc_E Stathmin-4; alpha-tubul 36.7 1.7E+02 0.0059 26.5 9.0 33 569-601 46-78 (143)
449 1w8o_A Bacterial sialidase; 3D 36.5 4.7E+02 0.016 28.8 16.8 128 233-371 199-339 (601)
450 1hxn_A Hemopexin, HPX; heme, b 36.1 1E+02 0.0035 30.0 8.2 107 257-388 27-144 (219)
451 2p9w_A MAL S 1 allergenic prot 35.8 3.9E+02 0.013 27.7 18.6 151 174-335 36-216 (334)
452 1jof_A Carboxy-CIS,CIS-muconat 35.6 3.6E+02 0.012 27.2 17.8 16 173-188 167-183 (365)
453 2lw1_A ABC transporter ATP-bin 35.5 1.1E+02 0.0037 25.3 7.1 23 582-604 24-46 (89)
454 3teq_A Stromal interaction mol 34.9 1.6E+02 0.0054 25.1 7.9 60 605-675 18-82 (101)
455 3v4v_A Integrin alpha-4; cell 34.6 64 0.0022 36.5 7.4 135 249-386 166-311 (597)
456 1fxk_A Prefoldin; archaeal pro 34.5 97 0.0033 26.1 7.0 25 654-678 69-93 (107)
457 3kci_A Probable E3 ubiquitin-p 34.4 4.1E+02 0.014 27.5 16.9 18 251-268 223-240 (389)
458 2ocy_A RAB guanine nucleotide 34.4 2.8E+02 0.0095 25.5 10.5 26 655-680 120-145 (154)
459 3hx6_A Type 4 fimbrial biogene 34.0 5.4E+02 0.018 28.8 18.1 76 209-287 152-235 (570)
460 1gk4_A Vimentin; intermediate 33.9 1.3E+02 0.0044 24.6 7.2 28 574-601 2-29 (84)
461 1p9i_A Cortexillin I/GCN4 hybr 33.7 61 0.0021 20.6 3.8 16 587-602 2-17 (31)
462 3tc9_A Hypothetical hydrolase; 33.4 4.5E+02 0.016 27.7 19.9 144 98-283 149-300 (430)
463 1lwu_C Fibrinogen gamma chain; 33.3 66 0.0023 33.5 6.6 46 590-635 8-53 (323)
464 1kd8_B GABH BLL, GCN4 acid bas 33.2 52 0.0018 22.4 3.7 20 612-631 5-24 (36)
465 3fpp_A Macrolide-specific effl 33.1 42 0.0015 34.6 5.3 20 585-604 74-93 (341)
466 1gqe_A Release factor 2, RF2; 32.8 1E+02 0.0035 32.6 8.0 14 577-590 29-42 (365)
467 2l5g_B Putative uncharacterize 32.3 38 0.0013 24.1 3.0 27 612-638 6-32 (42)
468 1l8d_A DNA double-strand break 32.2 55 0.0019 28.1 5.0 23 612-634 21-43 (112)
469 1f5n_A Interferon-induced guan 31.9 2.5E+02 0.0086 31.6 11.6 19 588-606 488-506 (592)
470 3c3g_A Alpha/beta peptide with 31.8 58 0.002 21.8 3.7 16 612-627 4-19 (33)
471 3tnu_B Keratin, type II cytosk 31.8 2.7E+02 0.0091 24.5 10.2 63 570-632 33-99 (129)
472 2oto_A M protein; helical coil 31.7 2E+02 0.007 26.1 9.1 8 627-634 98-105 (155)
473 1fxk_C Protein (prefoldin); ar 31.7 1.9E+02 0.0064 25.5 8.7 86 574-673 2-125 (133)
474 4dk0_A Putative MACA; alpha-ha 31.6 31 0.001 36.1 3.9 14 585-598 89-102 (369)
475 4hw6_A Hypothetical protein, I 31.5 4.2E+02 0.014 28.1 13.1 148 156-333 152-303 (433)
476 1ci6_A Transcription factor AT 30.6 1.3E+02 0.0043 23.3 6.3 35 597-631 26-60 (63)
477 3c3f_A Alpha/beta peptide with 30.2 64 0.0022 21.7 3.7 17 612-628 5-21 (34)
478 3u0c_A Invasin IPAB, 62 kDa an 30.2 1.5E+02 0.0053 27.4 7.6 75 571-645 80-154 (201)
479 1t2k_D Cyclic-AMP-dependent tr 30.1 84 0.0029 24.0 5.1 33 599-631 27-59 (61)
480 2ve7_A Kinetochore protein HEC 29.8 1.8E+02 0.0061 30.0 9.3 87 567-666 147-233 (315)
481 2oxj_A Hybrid alpha/beta pepti 29.5 67 0.0023 21.6 3.7 20 612-631 5-24 (34)
482 3lp9_A LS-24; SEED albumin, pl 29.4 69 0.0024 31.4 5.8 63 156-234 129-202 (227)
483 1fwx_A Nitrous oxide reductase 29.3 6.5E+02 0.022 28.2 16.6 271 83-390 80-433 (595)
484 1t3u_A Conserved hypothetical 29.2 2.2E+02 0.0074 24.0 8.3 63 568-634 32-94 (104)
485 1jnm_A Proto-oncogene C-JUN; B 28.9 1.3E+02 0.0044 23.0 6.1 25 601-625 8-32 (62)
486 1d7m_A Cortexillin I; coiled-c 28.6 2.5E+02 0.0085 23.2 9.5 44 585-635 51-94 (101)
487 4fla_A Regulation of nuclear P 28.5 2.4E+02 0.0082 25.8 8.8 68 607-681 64-131 (152)
488 2xnx_M M protein, M1-BC1; cell 28.3 2.3E+02 0.0078 25.7 8.3 11 653-663 118-128 (146)
489 2o6n_A RH4B designed peptide; 28.2 1.1E+02 0.0036 20.0 4.3 32 594-631 2-33 (35)
490 2cn3_A Xyloglucanase, beta-1,4 28.1 7.1E+02 0.024 28.3 25.3 111 226-340 224-343 (737)
491 3m48_A General control protein 27.7 75 0.0026 21.3 3.7 18 612-629 4-21 (33)
492 2wt7_A Proto-oncogene protein 27.6 86 0.0029 24.2 4.8 38 596-633 11-48 (63)
493 2j04_A TAU60, YPL007P, hypothe 27.6 6.9E+02 0.024 28.0 17.7 148 207-390 96-256 (588)
494 3cl3_D NF-kappa-B essential mo 27.5 20 0.00069 31.8 1.3 22 680-705 108-129 (130)
495 3sre_A PON1, serum paraoxonase 27.3 5.4E+02 0.019 26.7 18.1 151 223-388 82-252 (355)
496 3qhy_B Beta-lactamase inhibito 26.9 4.7E+02 0.016 25.8 19.2 135 148-319 72-207 (282)
497 2zqm_A Prefoldin beta subunit 26.8 1.3E+02 0.0045 25.6 6.6 25 654-678 74-98 (117)
498 1a93_B MAX protein, coiled coi 26.7 55 0.0019 22.2 2.9 23 568-590 9-31 (34)
499 1gu4_A CAAT/enhancer binding p 26.7 1.3E+02 0.0045 24.4 5.9 53 600-666 21-73 (78)
500 3htk_A Structural maintenance 26.6 1.8E+02 0.0063 21.7 6.6 55 578-632 3-57 (60)
No 1
>2xn4_A Kelch-like protein 2; structural protein, cytoskeleton; 1.99A {Homo sapiens}
Probab=100.00 E-value=1.8e-43 Score=373.76 Aligned_cols=292 Identities=16% Similarity=0.210 Sum_probs=248.7
Q ss_pred CCCccCCCCCEEEEEcCCCCCCCCccccccccccCCCCCCCCCeEEeeecCCCCCCcceeEEEEECCEEEEEcccCCCCC
Q 005043 33 PKRNSNPNSECVAPSSNHADDRDCECTIAGPEVSNGTSGNSENWMVLSIAGDKPIPRFNHAAAVIGNKMIVVGGESGNGL 112 (717)
Q Consensus 33 ~~r~s~~~~~~i~l~GG~~~~~~~~~~~~~~~~~~~~~~~s~~W~~l~~~g~~P~~R~~haav~~~~~lyV~GG~~~~~~ 112 (717)
.+|..+..++.||++||..... ......|++ .++.|..++ ++|.+|.+|+++.++++|||+||.++...
T Consensus 7 ~~r~~~~~~~~i~v~GG~~~~~--~~~~~~~d~------~~~~W~~~~---~~p~~r~~~~~~~~~~~lyv~GG~~~~~~ 75 (302)
T 2xn4_A 7 RLRTPMNLPKLMVVVGGQAPKA--IRSVECYDF------KEERWHQVA---ELPSRRCRAGMVYMAGLVFAVGGFNGSLR 75 (302)
T ss_dssp --------CEEEEEECCBSSSB--CCCEEEEET------TTTEEEEEC---CCSSCCBSCEEEEETTEEEEESCBCSSSB
T ss_pred cCCcccCCCCEEEEECCCCCCC--CCcEEEEcC------cCCcEeEcc---cCCcccccceEEEECCEEEEEeCcCCCcc
Confidence 4566677778899999954421 122233554 788999997 89999999999999999999999988778
Q ss_pred cccEEEEEcCCCceEEccccccCCCCCCCCCCCcccceEEEEECCEEEEEeccCCCCCCceEEEEEECCCCcEEEeeecC
Q 005043 113 LDDVQVLNFDRFSWTAASSKLYLSPSSLPLKIPACRGHSLISWGKKVLLVGGKTDSGSDRVSVWTFDTETECWSVVEAKG 192 (717)
Q Consensus 113 ~~~v~~yd~~t~~W~~l~~~~~~~~~~~~~~~p~r~~hs~v~~~~~Iyv~GG~~~~~~~~~~v~~yD~~t~~W~~l~~~g 192 (717)
++++++||+.+++|..++++ +.+|..|++++++++||++||... ....+++|+||+.+++|+.++
T Consensus 76 ~~~~~~~d~~~~~W~~~~~~-----------p~~r~~~~~~~~~~~iyv~GG~~~-~~~~~~~~~~d~~~~~W~~~~--- 140 (302)
T 2xn4_A 76 VRTVDSYDPVKDQWTSVANM-----------RDRRSTLGAAVLNGLLYAVGGFDG-STGLSSVEAYNIKSNEWFHVA--- 140 (302)
T ss_dssp CCCEEEEETTTTEEEEECCC-----------SSCCBSCEEEEETTEEEEEEEECS-SCEEEEEEEEETTTTEEEEEC---
T ss_pred ccceEEECCCCCceeeCCCC-----------CccccceEEEEECCEEEEEcCCCC-CccCceEEEEeCCCCeEeecC---
Confidence 89999999999999999873 346778999999999999999864 345789999999999999997
Q ss_pred CCCCCceeeEEEEECCEEEEEccccCCC-CCcCcEEEEEcCCCceEeccCCCCCCCCCcccEEEEECCcEEEEEcCCCCC
Q 005043 193 DIPVARSGHTVVRASSVLILFGGEDGKR-RKLNDLHMFDLKSLTWLPLHCTGTGPSPRSNHVAALYDDKNLLIFGGSSKS 271 (717)
Q Consensus 193 ~~P~~R~~hs~~~~~~~Lyv~GG~~~~~-~~~~~v~~yD~~t~~W~~l~~~g~~P~~R~~~aa~~~~~~~lyV~GG~~~~ 271 (717)
.+|.+|.+|++++++++||++||.+... ..++++++||+.+++|+.+. ++|.+|..|++++++++ |||+||.+..
T Consensus 141 ~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~yd~~~~~W~~~~---~~p~~r~~~~~~~~~~~-iyv~GG~~~~ 216 (302)
T 2xn4_A 141 PMNTRRSSVGVGVVGGLLYAVGGYDVASRQCLSTVECYNATTNEWTYIA---EMSTRRSGAGVGVLNNL-LYAVGGHDGP 216 (302)
T ss_dssp CCSSCCBSCEEEEETTEEEEECCEETTTTEECCCEEEEETTTTEEEEEC---CCSSCCBSCEEEEETTE-EEEECCBSSS
T ss_pred CCCCcccCceEEEECCEEEEEeCCCCCCCccccEEEEEeCCCCcEEECC---CCccccccccEEEECCE-EEEECCCCCC
Confidence 4899999999999999999999997653 35789999999999999997 88999999999999888 9999999887
Q ss_pred CCCCeEEEEECCCCcEEEeecCCCCCCCCcceEEEEECCEEEEEecCCCCCccCeEEEEECCCCcEEEeecCCCCCCCCC
Q 005043 272 KTLNDLYSLDFETMIWTRIKIRGFHPSPRAGCCGVLCGTKWYIAGGGSRKKRHAETLIFDILKGEWSVAITSPSSSVTSN 351 (717)
Q Consensus 272 ~~~ndv~~yd~~t~~W~~v~~~g~~P~~R~~~sav~~~~~IyV~GG~~~~~~~~dv~~yD~~t~~W~~l~~~p~~~~~~r 351 (717)
...+++++||+.+++|+.+..+ |.+|.+|+++.++++|||+||.+.....+++++||+.+++|+.++ ..++.+|
T Consensus 217 ~~~~~~~~yd~~~~~W~~~~~~---~~~r~~~~~~~~~~~i~v~GG~~~~~~~~~v~~yd~~~~~W~~~~---~~~~~~r 290 (302)
T 2xn4_A 217 LVRKSVEVYDPTTNAWRQVADM---NMCRRNAGVCAVNGLLYVVGGDDGSCNLASVEYYNPTTDKWTVVS---SCMSTGR 290 (302)
T ss_dssp SBCCCEEEEETTTTEEEEECCC---SSCCBSCEEEEETTEEEEECCBCSSSBCCCEEEEETTTTEEEECS---SCCSSCC
T ss_pred cccceEEEEeCCCCCEeeCCCC---CCccccCeEEEECCEEEEECCcCCCcccccEEEEcCCCCeEEECC---cccCccc
Confidence 7789999999999999999754 889999999999999999999987777899999999999999985 2456789
Q ss_pred cceEEEEEE
Q 005043 352 KGFTLVLVQ 360 (717)
Q Consensus 352 ~g~s~v~v~ 360 (717)
.+|+++++.
T Consensus 291 ~~~~~~~~~ 299 (302)
T 2xn4_A 291 SYAGVTVID 299 (302)
T ss_dssp BSCEEEEEE
T ss_pred ccceEEEec
Confidence 999999883
No 2
>1zgk_A Kelch-like ECH-associated protein 1; beta-propeller, kelch repeat motif, protein binding; HET: MSE; 1.35A {Homo sapiens} SCOP: b.68.11.1 PDB: 2flu_X 1u6d_X 1x2j_A 1x2r_A 2dyh_A 2z32_A 3ade_A
Probab=100.00 E-value=2.9e-43 Score=374.10 Aligned_cols=293 Identities=18% Similarity=0.268 Sum_probs=248.1
Q ss_pred CCCCCCCccCCCCCEEEEEcCCCCCCCCccccccccccCCCCCCCCCeEEeeecCCCCCCcceeEEEEECCEEEEEccc-
Q 005043 29 PIRPPKRNSNPNSECVAPSSNHADDRDCECTIAGPEVSNGTSGNSENWMVLSIAGDKPIPRFNHAAAVIGNKMIVVGGE- 107 (717)
Q Consensus 29 p~~~~~r~s~~~~~~i~l~GG~~~~~~~~~~~~~~~~~~~~~~~s~~W~~l~~~g~~P~~R~~haav~~~~~lyV~GG~- 107 (717)
|..+..+..+..++.||++||. .+ ........|++ .+++|..++ ++|.+|.+|++++++++|||+||.
T Consensus 12 ~~~~~~~~~~~~~~~i~v~GG~-~~-~~~~~~~~~d~------~~~~W~~~~---~~p~~r~~~~~~~~~~~lyv~GG~~ 80 (308)
T 1zgk_A 12 GLVPRGSHAPKVGRLIYTAGGY-FR-QSLSYLEAYNP------SNGTWLRLA---DLQVPRSGLAGCVVGGLLYAVGGRN 80 (308)
T ss_dssp ---------CCCCCCEEEECCB-SS-SBCCCEEEEET------TTTEEEECC---CCSSCCBSCEEEEETTEEEEECCEE
T ss_pred CeeeCCccccCCCCEEEEEeCc-CC-CCcceEEEEcC------CCCeEeECC---CCCcccccceEEEECCEEEEECCCc
Confidence 4444556777888999999996 22 12222334554 789999997 899999999999999999999998
Q ss_pred ---CCCCCcccEEEEEcCCCceEEccccccCCCCCCCCCCCcccceEEEEECCEEEEEeccCCCCCCceEEEEEECCCCc
Q 005043 108 ---SGNGLLDDVQVLNFDRFSWTAASSKLYLSPSSLPLKIPACRGHSLISWGKKVLLVGGKTDSGSDRVSVWTFDTETEC 184 (717)
Q Consensus 108 ---~~~~~~~~v~~yd~~t~~W~~l~~~~~~~~~~~~~~~p~r~~hs~v~~~~~Iyv~GG~~~~~~~~~~v~~yD~~t~~ 184 (717)
.+...++++++||+.+++|..++++ +.+|..|++++++++||++||... ....+++++||+.+++
T Consensus 81 ~~~~~~~~~~~~~~~d~~~~~W~~~~~~-----------p~~r~~~~~~~~~~~iyv~GG~~~-~~~~~~~~~yd~~~~~ 148 (308)
T 1zgk_A 81 NSPDGNTDSSALDCYNPMTNQWSPCAPM-----------SVPRNRIGVGVIDGHIYAVGGSHG-CIHHNSVERYEPERDE 148 (308)
T ss_dssp EETTEEEECCCEEEEETTTTEEEECCCC-----------SSCCBTCEEEEETTEEEEECCEET-TEECCCEEEEETTTTE
T ss_pred CCCCCCeecceEEEECCCCCeEeECCCC-----------CcCccccEEEEECCEEEEEcCCCC-CcccccEEEECCCCCe
Confidence 5556789999999999999999873 346778999999999999999864 3346789999999999
Q ss_pred EEEeeecCCCCCCceeeEEEEECCEEEEEccccCCCCCcCcEEEEEcCCCceEeccCCCCCCCCCcccEEEEECCcEEEE
Q 005043 185 WSVVEAKGDIPVARSGHTVVRASSVLILFGGEDGKRRKLNDLHMFDLKSLTWLPLHCTGTGPSPRSNHVAALYDDKNLLI 264 (717)
Q Consensus 185 W~~l~~~g~~P~~R~~hs~~~~~~~Lyv~GG~~~~~~~~~~v~~yD~~t~~W~~l~~~g~~P~~R~~~aa~~~~~~~lyV 264 (717)
|+.++ .+|.+|.+|++++++++||++||.+... .++++++||+.+++|+.++ ++|.+|..|++++++++ |||
T Consensus 149 W~~~~---~~p~~r~~~~~~~~~~~iyv~GG~~~~~-~~~~~~~yd~~~~~W~~~~---~~p~~r~~~~~~~~~~~-iyv 220 (308)
T 1zgk_A 149 WHLVA---PMLTRRIGVGVAVLNRLLYAVGGFDGTN-RLNSAECYYPERNEWRMIT---AMNTIRSGAGVCVLHNC-IYA 220 (308)
T ss_dssp EEECC---CCSSCCBSCEEEEETTEEEEECCBCSSC-BCCCEEEEETTTTEEEECC---CCSSCCBSCEEEEETTE-EEE
T ss_pred EeECC---CCCccccceEEEEECCEEEEEeCCCCCC-cCceEEEEeCCCCeEeeCC---CCCCccccceEEEECCE-EEE
Confidence 99998 4899999999999999999999998764 4899999999999999997 89999999999999888 999
Q ss_pred EcCCCCCCCCCeEEEEECCCCcEEEeecCCCCCCCCcceEEEEECCEEEEEecCCCCCccCeEEEEECCCCcEEEeecCC
Q 005043 265 FGGSSKSKTLNDLYSLDFETMIWTRIKIRGFHPSPRAGCCGVLCGTKWYIAGGGSRKKRHAETLIFDILKGEWSVAITSP 344 (717)
Q Consensus 265 ~GG~~~~~~~ndv~~yd~~t~~W~~v~~~g~~P~~R~~~sav~~~~~IyV~GG~~~~~~~~dv~~yD~~t~~W~~l~~~p 344 (717)
+||.+.....+++++||+.+++|+.+..+ |.+|.+|+++.++++|||+||.+.....+++++||+.+++|+.++.
T Consensus 221 ~GG~~~~~~~~~v~~yd~~~~~W~~~~~~---p~~r~~~~~~~~~~~i~v~GG~~~~~~~~~v~~yd~~~~~W~~~~~-- 295 (308)
T 1zgk_A 221 AGGYDGQDQLNSVERYDVETETWTFVAPM---KHRRSALGITVHQGRIYVLGGYDGHTFLDSVECYDPDTDTWSEVTR-- 295 (308)
T ss_dssp ECCBCSSSBCCCEEEEETTTTEEEECCCC---SSCCBSCEEEEETTEEEEECCBCSSCBCCEEEEEETTTTEEEEEEE--
T ss_pred EeCCCCCCccceEEEEeCCCCcEEECCCC---CCCccceEEEEECCEEEEEcCcCCCcccceEEEEcCCCCEEeecCC--
Confidence 99998877889999999999999999754 8899999999999999999999887788999999999999999973
Q ss_pred CCCCCCCcceEEEEE
Q 005043 345 SSSVTSNKGFTLVLV 359 (717)
Q Consensus 345 ~~~~~~r~g~s~v~v 359 (717)
+|.+|.+|+++++
T Consensus 296 --~p~~r~~~~~~~l 308 (308)
T 1zgk_A 296 --MTSGRSGVGVAVT 308 (308)
T ss_dssp --CSSCCBSCEEEEC
T ss_pred --CCCCcccceeEeC
Confidence 4568899988763
No 3
>1zgk_A Kelch-like ECH-associated protein 1; beta-propeller, kelch repeat motif, protein binding; HET: MSE; 1.35A {Homo sapiens} SCOP: b.68.11.1 PDB: 2flu_X 1u6d_X 1x2j_A 1x2r_A 2dyh_A 2z32_A 3ade_A
Probab=100.00 E-value=2e-43 Score=375.38 Aligned_cols=281 Identities=17% Similarity=0.217 Sum_probs=240.2
Q ss_pred CCCCCCcceeEEEEECCEEEEEcccCCCCCcccEEEEEcCCCceEEccccccCCCCCCCCCCCcccceEEEEECCEEEEE
Q 005043 83 GDKPIPRFNHAAAVIGNKMIVVGGESGNGLLDDVQVLNFDRFSWTAASSKLYLSPSSLPLKIPACRGHSLISWGKKVLLV 162 (717)
Q Consensus 83 g~~P~~R~~haav~~~~~lyV~GG~~~~~~~~~v~~yd~~t~~W~~l~~~~~~~~~~~~~~~p~r~~hs~v~~~~~Iyv~ 162 (717)
++.|.+|..|+++.++++||+|||. ....++++++||+.+++|..++++ +.+|.+|++++++++||++
T Consensus 9 ~~~~~~~~~~~~~~~~~~i~v~GG~-~~~~~~~~~~~d~~~~~W~~~~~~-----------p~~r~~~~~~~~~~~lyv~ 76 (308)
T 1zgk_A 9 HSSGLVPRGSHAPKVGRLIYTAGGY-FRQSLSYLEAYNPSNGTWLRLADL-----------QVPRSGLAGCVVGGLLYAV 76 (308)
T ss_dssp ------------CCCCCCEEEECCB-SSSBCCCEEEEETTTTEEEECCCC-----------SSCCBSCEEEEETTEEEEE
T ss_pred ccCCeeeCCccccCCCCEEEEEeCc-CCCCcceEEEEcCCCCeEeECCCC-----------CcccccceEEEECCEEEEE
Confidence 4667899999999999999999998 456789999999999999999763 3467789999999999999
Q ss_pred eccC---CCCCCceEEEEEECCCCcEEEeeecCCCCCCceeeEEEEECCEEEEEccccCCCCCcCcEEEEEcCCCceEec
Q 005043 163 GGKT---DSGSDRVSVWTFDTETECWSVVEAKGDIPVARSGHTVVRASSVLILFGGEDGKRRKLNDLHMFDLKSLTWLPL 239 (717)
Q Consensus 163 GG~~---~~~~~~~~v~~yD~~t~~W~~l~~~g~~P~~R~~hs~~~~~~~Lyv~GG~~~~~~~~~~v~~yD~~t~~W~~l 239 (717)
||.. ......+++|+||+.+++|+.++ .+|.+|..|+++.++++|||+||.+.. ..++++++||+.+++|+.+
T Consensus 77 GG~~~~~~~~~~~~~~~~~d~~~~~W~~~~---~~p~~r~~~~~~~~~~~iyv~GG~~~~-~~~~~~~~yd~~~~~W~~~ 152 (308)
T 1zgk_A 77 GGRNNSPDGNTDSSALDCYNPMTNQWSPCA---PMSVPRNRIGVGVIDGHIYAVGGSHGC-IHHNSVERYEPERDEWHLV 152 (308)
T ss_dssp CCEEEETTEEEECCCEEEEETTTTEEEECC---CCSSCCBTCEEEEETTEEEEECCEETT-EECCCEEEEETTTTEEEEC
T ss_pred CCCcCCCCCCeecceEEEECCCCCeEeECC---CCCcCccccEEEEECCEEEEEcCCCCC-cccccEEEECCCCCeEeEC
Confidence 9984 33345678999999999999998 489999999999999999999998765 4689999999999999999
Q ss_pred cCCCCCCCCCcccEEEEECCcEEEEEcCCCCCCCCCeEEEEECCCCcEEEeecCCCCCCCCcceEEEEECCEEEEEecCC
Q 005043 240 HCTGTGPSPRSNHVAALYDDKNLLIFGGSSKSKTLNDLYSLDFETMIWTRIKIRGFHPSPRAGCCGVLCGTKWYIAGGGS 319 (717)
Q Consensus 240 ~~~g~~P~~R~~~aa~~~~~~~lyV~GG~~~~~~~ndv~~yd~~t~~W~~v~~~g~~P~~R~~~sav~~~~~IyV~GG~~ 319 (717)
+ ++|.+|..|++++++++ |||+||.+....++++++||+.+++|+.++.+ |.+|.+|+++.++++|||+||.+
T Consensus 153 ~---~~p~~r~~~~~~~~~~~-iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~---p~~r~~~~~~~~~~~iyv~GG~~ 225 (308)
T 1zgk_A 153 A---PMLTRRIGVGVAVLNRL-LYAVGGFDGTNRLNSAECYYPERNEWRMITAM---NTIRSGAGVCVLHNCIYAAGGYD 225 (308)
T ss_dssp C---CCSSCCBSCEEEEETTE-EEEECCBCSSCBCCCEEEEETTTTEEEECCCC---SSCCBSCEEEEETTEEEEECCBC
T ss_pred C---CCCccccceEEEEECCE-EEEEeCCCCCCcCceEEEEeCCCCeEeeCCCC---CCccccceEEEECCEEEEEeCCC
Confidence 7 89999999999999887 99999998777789999999999999999754 88999999999999999999998
Q ss_pred CCCccCeEEEEECCCCcEEEeecCCCCCCCCCcceEEEEEEeCCCcEEEEEcCCCCCC-CCeEEEEEccCCcccCc
Q 005043 320 RKKRHAETLIFDILKGEWSVAITSPSSSVTSNKGFTLVLVQHKEKDFLVAFGGIKKEP-SNQVEVLSIEKNESSMG 394 (717)
Q Consensus 320 ~~~~~~dv~~yD~~t~~W~~l~~~p~~~~~~r~g~s~v~v~~~~~~~I~v~GG~~~~~-~n~v~vyd~~~~eW~~~ 394 (717)
.....+++++||+.+++|+.+. ..|.+|.+++++++ +++||++||.++.. .+++++||+.+++|...
T Consensus 226 ~~~~~~~v~~yd~~~~~W~~~~----~~p~~r~~~~~~~~----~~~i~v~GG~~~~~~~~~v~~yd~~~~~W~~~ 293 (308)
T 1zgk_A 226 GQDQLNSVERYDVETETWTFVA----PMKHRRSALGITVH----QGRIYVLGGYDGHTFLDSVECYDPDTDTWSEV 293 (308)
T ss_dssp SSSBCCCEEEEETTTTEEEECC----CCSSCCBSCEEEEE----TTEEEEECCBCSSCBCCEEEEEETTTTEEEEE
T ss_pred CCCccceEEEEeCCCCcEEECC----CCCCCccceEEEEE----CCEEEEEcCcCCCcccceEEEEcCCCCEEeec
Confidence 7777899999999999999987 34568899999988 78999999987654 88999999999998653
No 4
>3ii7_A Kelch-like protein 7; protein-binding, kelch-repeat, structural genomics, structur genomics consortium, SGC, kelch repeat, nucleus, protein BI; 1.63A {Homo sapiens}
Probab=100.00 E-value=1e-42 Score=368.58 Aligned_cols=282 Identities=18% Similarity=0.219 Sum_probs=248.6
Q ss_pred CCEEEEEcCCCCCCCCccccccccccCCCCCCCCCeEEeeecCCCCCCcceeEEEEECCEEEEEcccCCCCCcccEEEEE
Q 005043 41 SECVAPSSNHADDRDCECTIAGPEVSNGTSGNSENWMVLSIAGDKPIPRFNHAAAVIGNKMIVVGGESGNGLLDDVQVLN 120 (717)
Q Consensus 41 ~~~i~l~GG~~~~~~~~~~~~~~~~~~~~~~~s~~W~~l~~~g~~P~~R~~haav~~~~~lyV~GG~~~~~~~~~v~~yd 120 (717)
.+.||++||... ......|++ .+++|..++ ++|.+|.+|++++++++|||+||.. ...++++++||
T Consensus 11 ~~~l~~~GG~~~----~~~~~~~d~------~~~~W~~~~---~~p~~r~~~~~~~~~~~lyv~GG~~-~~~~~~~~~~d 76 (306)
T 3ii7_A 11 HDYRIALFGGSQ----PQSCRYFNP------KDYSWTDIR---CPFEKRRDAACVFWDNVVYILGGSQ-LFPIKRMDCYN 76 (306)
T ss_dssp CCEEEEEECCSS----TTSEEEEET------TTTEEEECC---CCSCCCBSCEEEEETTEEEEECCBS-SSBCCEEEEEE
T ss_pred cceEEEEeCCCC----CceEEEecC------CCCCEecCC---CCCcccceeEEEEECCEEEEEeCCC-CCCcceEEEEe
Confidence 477999999544 122233555 889999997 8899999999999999999999988 66789999999
Q ss_pred cCCCceEEccccccCCCCCCCCCCCcccceEEEEECCEEEEEeccCCCCCCceEEEEEECCCCcEEEeeecCCCCCCcee
Q 005043 121 FDRFSWTAASSKLYLSPSSLPLKIPACRGHSLISWGKKVLLVGGKTDSGSDRVSVWTFDTETECWSVVEAKGDIPVARSG 200 (717)
Q Consensus 121 ~~t~~W~~l~~~~~~~~~~~~~~~p~r~~hs~v~~~~~Iyv~GG~~~~~~~~~~v~~yD~~t~~W~~l~~~g~~P~~R~~ 200 (717)
+.+++|..++++ +.+|.+|++++++++|||+||.+......+++|+||+.+++|+.++ .+|.+|..
T Consensus 77 ~~~~~W~~~~~~-----------p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~d~~~~~W~~~~---~~p~~r~~ 142 (306)
T 3ii7_A 77 VVKDSWYSKLGP-----------PTPRDSLAACAAEGKIYTSGGSEVGNSALYLFECYDTRTESWHTKP---SMLTQRCS 142 (306)
T ss_dssp TTTTEEEEEECC-----------SSCCBSCEEEEETTEEEEECCBBTTBSCCCCEEEEETTTTEEEEEC---CCSSCCBS
T ss_pred CCCCeEEECCCC-----------CccccceeEEEECCEEEEECCCCCCCcEeeeEEEEeCCCCceEeCC---CCcCCcce
Confidence 999999999873 3567889999999999999999756667889999999999999997 59999999
Q ss_pred eEEEEECCEEEEEccccCCCC---CcCcEEEEEcCCCceEeccCCCCCCCCCcccEEEEECCcEEEEEcCCCCCCCCCeE
Q 005043 201 HTVVRASSVLILFGGEDGKRR---KLNDLHMFDLKSLTWLPLHCTGTGPSPRSNHVAALYDDKNLLIFGGSSKSKTLNDL 277 (717)
Q Consensus 201 hs~~~~~~~Lyv~GG~~~~~~---~~~~v~~yD~~t~~W~~l~~~g~~P~~R~~~aa~~~~~~~lyV~GG~~~~~~~ndv 277 (717)
|+++.++++||++||...... .++++++||+.+++|+.++ ++|.+|..|++++++++ |||+||.+....++++
T Consensus 143 ~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~yd~~~~~W~~~~---~~p~~r~~~~~~~~~~~-i~v~GG~~~~~~~~~~ 218 (306)
T 3ii7_A 143 HGMVEANGLIYVCGGSLGNNVSGRVLNSCEVYDPATETWTELC---PMIEARKNHGLVFVKDK-IFAVGGQNGLGGLDNV 218 (306)
T ss_dssp CEEEEETTEEEEECCEESCTTTCEECCCEEEEETTTTEEEEEC---CCSSCCBSCEEEEETTE-EEEECCEETTEEBCCE
T ss_pred eEEEEECCEEEEECCCCCCCCcccccceEEEeCCCCCeEEECC---CccchhhcceEEEECCE-EEEEeCCCCCCCCceE
Confidence 999999999999999976543 2899999999999999997 89999999999999888 9999999877778999
Q ss_pred EEEECCCCcEEEeecCCCCCCCCcceEEEEECCEEEEEecCCCCCccCeEEEEECCCCcEEEeecCCCCCCCCCcceEEE
Q 005043 278 YSLDFETMIWTRIKIRGFHPSPRAGCCGVLCGTKWYIAGGGSRKKRHAETLIFDILKGEWSVAITSPSSSVTSNKGFTLV 357 (717)
Q Consensus 278 ~~yd~~t~~W~~v~~~g~~P~~R~~~sav~~~~~IyV~GG~~~~~~~~dv~~yD~~t~~W~~l~~~p~~~~~~r~g~s~v 357 (717)
++||+.+++|+.++.+ |.+|.+|+++.++++|||+||.+.....+++++||+.+++|+.++. .+.+|.+|+++
T Consensus 219 ~~yd~~~~~W~~~~~~---p~~r~~~~~~~~~~~i~v~GG~~~~~~~~~~~~yd~~~~~W~~~~~----~~~~r~~~~~~ 291 (306)
T 3ii7_A 219 EYYDIKLNEWKMVSPM---PWKGVTVKCAAVGSIVYVLAGFQGVGRLGHILEYNTETDKWVANSK----VRAFPVTSCLI 291 (306)
T ss_dssp EEEETTTTEEEECCCC---SCCBSCCEEEEETTEEEEEECBCSSSBCCEEEEEETTTTEEEEEEE----EECCSCTTCEE
T ss_pred EEeeCCCCcEEECCCC---CCCccceeEEEECCEEEEEeCcCCCeeeeeEEEEcCCCCeEEeCCC----cccccceeEEE
Confidence 9999999999999654 8899999999999999999999887788999999999999999974 34688889988
Q ss_pred EEEe
Q 005043 358 LVQH 361 (717)
Q Consensus 358 ~v~~ 361 (717)
++..
T Consensus 292 ~~~~ 295 (306)
T 3ii7_A 292 CVVD 295 (306)
T ss_dssp EEEE
T ss_pred EECC
Confidence 8853
No 5
>2vpj_A Kelch-like protein 12; adaptor protein, WNT signaling pathway, protein-binding, UBI degradation, UBL conjugation pathway, CUL3, kelch repeat; 1.85A {Homo sapiens}
Probab=100.00 E-value=3.1e-42 Score=363.76 Aligned_cols=286 Identities=19% Similarity=0.323 Sum_probs=247.8
Q ss_pred CCCCEEEEEcCCCCCCCCccccccccccCCCCCCCCCeEEeeecCCCCCCcceeEEEEECCEEEEEcccCCCCCcccEEE
Q 005043 39 PNSECVAPSSNHADDRDCECTIAGPEVSNGTSGNSENWMVLSIAGDKPIPRFNHAAAVIGNKMIVVGGESGNGLLDDVQV 118 (717)
Q Consensus 39 ~~~~~i~l~GG~~~~~~~~~~~~~~~~~~~~~~~s~~W~~l~~~g~~P~~R~~haav~~~~~lyV~GG~~~~~~~~~v~~ 118 (717)
..++.||++||..+..........|++ .+++|..++ ++|.+|.+|+++.++++|||+||..+...++++++
T Consensus 12 ~~~~~i~~~GG~~~~~~~~~~~~~~d~------~~~~W~~~~---~~p~~r~~~~~~~~~~~l~v~GG~~~~~~~~~~~~ 82 (301)
T 2vpj_A 12 GANEVLLVVGGFGSQQSPIDVVEKYDP------KTQEWSFLP---SITRKRRYVASVSLHDRIYVIGGYDGRSRLSSVEC 82 (301)
T ss_dssp -CCEEEEEECCEETTTEECCCEEEEET------TTTEEEECC---CCSSCCBSCEEEEETTEEEEECCBCSSCBCCCEEE
T ss_pred cCCCEEEEEeCccCCCcceeEEEEEcC------CCCeEEeCC---CCChhhccccEEEECCEEEEEcCCCCCccCceEEE
Confidence 346779999993322222222233444 789999998 78999999999999999999999987778899999
Q ss_pred EEcCCCc---eEEccccccCCCCCCCCCCCcccceEEEEECCEEEEEeccCCCCCCceEEEEEECCCCcEEEeeecCCCC
Q 005043 119 LNFDRFS---WTAASSKLYLSPSSLPLKIPACRGHSLISWGKKVLLVGGKTDSGSDRVSVWTFDTETECWSVVEAKGDIP 195 (717)
Q Consensus 119 yd~~t~~---W~~l~~~~~~~~~~~~~~~p~r~~hs~v~~~~~Iyv~GG~~~~~~~~~~v~~yD~~t~~W~~l~~~g~~P 195 (717)
||+.+++ |..++++ +.+|..|++++++++||++||... ....+++++||+.+++|+.+++ +|
T Consensus 83 ~d~~~~~~~~W~~~~~~-----------p~~r~~~~~~~~~~~lyv~GG~~~-~~~~~~~~~~d~~~~~W~~~~~---~p 147 (301)
T 2vpj_A 83 LDYTADEDGVWYSVAPM-----------NVRRGLAGATTLGDMIYVSGGFDG-SRRHTSMERYDPNIDQWSMLGD---MQ 147 (301)
T ss_dssp EETTCCTTCCCEEECCC-----------SSCCBSCEEEEETTEEEEECCBCS-SCBCCEEEEEETTTTEEEEEEE---CS
T ss_pred EECCCCCCCeeEECCCC-----------CCCccceeEEEECCEEEEEcccCC-CcccceEEEEcCCCCeEEECCC---CC
Confidence 9999999 9999873 346788999999999999999864 3447799999999999999984 89
Q ss_pred CCceeeEEEEECCEEEEEccccCCCCCcCcEEEEEcCCCceEeccCCCCCCCCCcccEEEEECCcEEEEEcCCCCCCCCC
Q 005043 196 VARSGHTVVRASSVLILFGGEDGKRRKLNDLHMFDLKSLTWLPLHCTGTGPSPRSNHVAALYDDKNLLIFGGSSKSKTLN 275 (717)
Q Consensus 196 ~~R~~hs~~~~~~~Lyv~GG~~~~~~~~~~v~~yD~~t~~W~~l~~~g~~P~~R~~~aa~~~~~~~lyV~GG~~~~~~~n 275 (717)
.+|.+|++++++++||++||.+.. ..++++++||+.+++|+.++ ++|.+|..|+++.++++ |||+||.+.....+
T Consensus 148 ~~r~~~~~~~~~~~iyv~GG~~~~-~~~~~~~~~d~~~~~W~~~~---~~p~~r~~~~~~~~~~~-i~v~GG~~~~~~~~ 222 (301)
T 2vpj_A 148 TAREGAGLVVASGVIYCLGGYDGL-NILNSVEKYDPHTGHWTNVT---PMATKRSGAGVALLNDH-IYVVGGFDGTAHLS 222 (301)
T ss_dssp SCCBSCEEEEETTEEEEECCBCSS-CBCCCEEEEETTTTEEEEEC---CCSSCCBSCEEEEETTE-EEEECCBCSSSBCC
T ss_pred CCcccceEEEECCEEEEECCCCCC-cccceEEEEeCCCCcEEeCC---CCCcccccceEEEECCE-EEEEeCCCCCcccc
Confidence 999999999999999999998765 47899999999999999996 88999999999999888 99999998877789
Q ss_pred eEEEEECCCCcEEEeecCCCCCCCCcceEEEEECCEEEEEecCCCCCccCeEEEEECCCCcEEEeecCCCCCCCCCcceE
Q 005043 276 DLYSLDFETMIWTRIKIRGFHPSPRAGCCGVLCGTKWYIAGGGSRKKRHAETLIFDILKGEWSVAITSPSSSVTSNKGFT 355 (717)
Q Consensus 276 dv~~yd~~t~~W~~v~~~g~~P~~R~~~sav~~~~~IyV~GG~~~~~~~~dv~~yD~~t~~W~~l~~~p~~~~~~r~g~s 355 (717)
++++||+.+++|+.+..+ |.+|..|+++.++++|||+||.+.....+++++||+.+++|+.++. .|.+|.+|+
T Consensus 223 ~v~~yd~~~~~W~~~~~~---p~~r~~~~~~~~~~~i~v~GG~~~~~~~~~v~~yd~~~~~W~~~~~----~~~~r~~~~ 295 (301)
T 2vpj_A 223 SVEAYNIRTDSWTTVTSM---TTPRCYVGATVLRGRLYAIAGYDGNSLLSSIECYDPIIDSWEVVTS----MGTQRCDAG 295 (301)
T ss_dssp CEEEEETTTTEEEEECCC---SSCCBSCEEEEETTEEEEECCBCSSSBEEEEEEEETTTTEEEEEEE----EEEEEESCE
T ss_pred eEEEEeCCCCcEEECCCC---CCcccceeEEEECCEEEEEcCcCCCcccccEEEEcCCCCeEEEcCC----CCcccccce
Confidence 999999999999999654 8899999999999999999998877777899999999999999873 456899999
Q ss_pred EEEEE
Q 005043 356 LVLVQ 360 (717)
Q Consensus 356 ~v~v~ 360 (717)
++++.
T Consensus 296 ~~~~~ 300 (301)
T 2vpj_A 296 VCVLR 300 (301)
T ss_dssp EEEEE
T ss_pred EEEeC
Confidence 98873
No 6
>3ii7_A Kelch-like protein 7; protein-binding, kelch-repeat, structural genomics, structur genomics consortium, SGC, kelch repeat, nucleus, protein BI; 1.63A {Homo sapiens}
Probab=100.00 E-value=2.5e-41 Score=357.90 Aligned_cols=263 Identities=17% Similarity=0.228 Sum_probs=235.7
Q ss_pred CCEEEEEcccCCCCCcccEEEEEcCCCceEEccccccCCCCCCCCCCCcccceEEEEECCEEEEEeccCCCCCCceEEEE
Q 005043 98 GNKMIVVGGESGNGLLDDVQVLNFDRFSWTAASSKLYLSPSSLPLKIPACRGHSLISWGKKVLLVGGKTDSGSDRVSVWT 177 (717)
Q Consensus 98 ~~~lyV~GG~~~~~~~~~v~~yd~~t~~W~~l~~~~~~~~~~~~~~~p~r~~hs~v~~~~~Iyv~GG~~~~~~~~~~v~~ 177 (717)
.+.||+|||.+. ++++++||+.+++|..++++ +.+|.+|++++++++|||+||.. ....+++++
T Consensus 11 ~~~l~~~GG~~~---~~~~~~~d~~~~~W~~~~~~-----------p~~r~~~~~~~~~~~lyv~GG~~--~~~~~~~~~ 74 (306)
T 3ii7_A 11 HDYRIALFGGSQ---PQSCRYFNPKDYSWTDIRCP-----------FEKRRDAACVFWDNVVYILGGSQ--LFPIKRMDC 74 (306)
T ss_dssp CCEEEEEECCSS---TTSEEEEETTTTEEEECCCC-----------SCCCBSCEEEEETTEEEEECCBS--SSBCCEEEE
T ss_pred cceEEEEeCCCC---CceEEEecCCCCCEecCCCC-----------CcccceeEEEEECCEEEEEeCCC--CCCcceEEE
Confidence 378999999765 78999999999999999873 34677899999999999999986 556789999
Q ss_pred EECCCCcEEEeeecCCCCCCceeeEEEEECCEEEEEccccCCCCCcCcEEEEEcCCCceEeccCCCCCCCCCcccEEEEE
Q 005043 178 FDTETECWSVVEAKGDIPVARSGHTVVRASSVLILFGGEDGKRRKLNDLHMFDLKSLTWLPLHCTGTGPSPRSNHVAALY 257 (717)
Q Consensus 178 yD~~t~~W~~l~~~g~~P~~R~~hs~~~~~~~Lyv~GG~~~~~~~~~~v~~yD~~t~~W~~l~~~g~~P~~R~~~aa~~~ 257 (717)
||+.+++|+.++ .+|.+|.+|+++.++++|||+||.+.....++++++||+.+++|+.++ ++|.+|..|+++.+
T Consensus 75 ~d~~~~~W~~~~---~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~d~~~~~W~~~~---~~p~~r~~~~~~~~ 148 (306)
T 3ii7_A 75 YNVVKDSWYSKL---GPPTPRDSLAACAAEGKIYTSGGSEVGNSALYLFECYDTRTESWHTKP---SMLTQRCSHGMVEA 148 (306)
T ss_dssp EETTTTEEEEEE---CCSSCCBSCEEEEETTEEEEECCBBTTBSCCCCEEEEETTTTEEEEEC---CCSSCCBSCEEEEE
T ss_pred EeCCCCeEEECC---CCCccccceeEEEECCEEEEECCCCCCCcEeeeEEEEeCCCCceEeCC---CCcCCcceeEEEEE
Confidence 999999999997 489999999999999999999999855567899999999999999996 89999999999999
Q ss_pred CCcEEEEEcCCCCCCC----CCeEEEEECCCCcEEEeecCCCCCCCCcceEEEEECCEEEEEecCCCCCccCeEEEEECC
Q 005043 258 DDKNLLIFGGSSKSKT----LNDLYSLDFETMIWTRIKIRGFHPSPRAGCCGVLCGTKWYIAGGGSRKKRHAETLIFDIL 333 (717)
Q Consensus 258 ~~~~lyV~GG~~~~~~----~ndv~~yd~~t~~W~~v~~~g~~P~~R~~~sav~~~~~IyV~GG~~~~~~~~dv~~yD~~ 333 (717)
+++ |||+||...... ++++++||+.+++|+.++.+ |.+|.+|+++.++++|||+||.+.....+++++||+.
T Consensus 149 ~~~-iyv~GG~~~~~~~~~~~~~~~~yd~~~~~W~~~~~~---p~~r~~~~~~~~~~~i~v~GG~~~~~~~~~~~~yd~~ 224 (306)
T 3ii7_A 149 NGL-IYVCGGSLGNNVSGRVLNSCEVYDPATETWTELCPM---IEARKNHGLVFVKDKIFAVGGQNGLGGLDNVEYYDIK 224 (306)
T ss_dssp TTE-EEEECCEESCTTTCEECCCEEEEETTTTEEEEECCC---SSCCBSCEEEEETTEEEEECCEETTEEBCCEEEEETT
T ss_pred CCE-EEEECCCCCCCCcccccceEEEeCCCCCeEEECCCc---cchhhcceEEEECCEEEEEeCCCCCCCCceEEEeeCC
Confidence 888 999999876554 89999999999999999754 8899999999999999999999877778899999999
Q ss_pred CCcEEEeecCCCCCCCCCcceEEEEEEeCCCcEEEEEcCCCCC-CCCeEEEEEccCCcccCc
Q 005043 334 KGEWSVAITSPSSSVTSNKGFTLVLVQHKEKDFLVAFGGIKKE-PSNQVEVLSIEKNESSMG 394 (717)
Q Consensus 334 t~~W~~l~~~p~~~~~~r~g~s~v~v~~~~~~~I~v~GG~~~~-~~n~v~vyd~~~~eW~~~ 394 (717)
+++|+.++ ..|.+|.+++++++ ++.||++||.++. ..+++++||+.+++|...
T Consensus 225 ~~~W~~~~----~~p~~r~~~~~~~~----~~~i~v~GG~~~~~~~~~~~~yd~~~~~W~~~ 278 (306)
T 3ii7_A 225 LNEWKMVS----PMPWKGVTVKCAAV----GSIVYVLAGFQGVGRLGHILEYNTETDKWVAN 278 (306)
T ss_dssp TTEEEECC----CCSCCBSCCEEEEE----TTEEEEEECBCSSSBCCEEEEEETTTTEEEEE
T ss_pred CCcEEECC----CCCCCccceeEEEE----CCEEEEEeCcCCCeeeeeEEEEcCCCCeEEeC
Confidence 99999986 34568899999988 7899999998765 488999999999998763
No 7
>2xn4_A Kelch-like protein 2; structural protein, cytoskeleton; 1.99A {Homo sapiens}
Probab=100.00 E-value=3.8e-41 Score=355.90 Aligned_cols=269 Identities=19% Similarity=0.282 Sum_probs=233.9
Q ss_pred EEEEECCEEEEEcccCCCCCcccEEEEEcCCCceEEccccccCCCCCCCCCCCcccceEEEEECCEEEEEeccCCCCCCc
Q 005043 93 AAAVIGNKMIVVGGESGNGLLDDVQVLNFDRFSWTAASSKLYLSPSSLPLKIPACRGHSLISWGKKVLLVGGKTDSGSDR 172 (717)
Q Consensus 93 aav~~~~~lyV~GG~~~~~~~~~v~~yd~~t~~W~~l~~~~~~~~~~~~~~~p~r~~hs~v~~~~~Iyv~GG~~~~~~~~ 172 (717)
..+.+++.||++||.+. ..++++++||+.+++|..++++ +.+|.+|++++++++||++||... ....
T Consensus 10 ~~~~~~~~i~v~GG~~~-~~~~~~~~~d~~~~~W~~~~~~-----------p~~r~~~~~~~~~~~lyv~GG~~~-~~~~ 76 (302)
T 2xn4_A 10 TPMNLPKLMVVVGGQAP-KAIRSVECYDFKEERWHQVAEL-----------PSRRCRAGMVYMAGLVFAVGGFNG-SLRV 76 (302)
T ss_dssp -----CEEEEEECCBSS-SBCCCEEEEETTTTEEEEECCC-----------SSCCBSCEEEEETTEEEEESCBCS-SSBC
T ss_pred cccCCCCEEEEECCCCC-CCCCcEEEEcCcCCcEeEcccC-----------CcccccceEEEECCEEEEEeCcCC-Cccc
Confidence 34557889999999865 4678999999999999999763 346778999999999999999864 3456
Q ss_pred eEEEEEECCCCcEEEeeecCCCCCCceeeEEEEECCEEEEEccccCCCCCcCcEEEEEcCCCceEeccCCCCCCCCCccc
Q 005043 173 VSVWTFDTETECWSVVEAKGDIPVARSGHTVVRASSVLILFGGEDGKRRKLNDLHMFDLKSLTWLPLHCTGTGPSPRSNH 252 (717)
Q Consensus 173 ~~v~~yD~~t~~W~~l~~~g~~P~~R~~hs~~~~~~~Lyv~GG~~~~~~~~~~v~~yD~~t~~W~~l~~~g~~P~~R~~~ 252 (717)
+++|+||+.+++|+.++ .+|.+|.+|++++++++||++||.+.. ..++++++||+.+++|+.++ ++|.+|..|
T Consensus 77 ~~~~~~d~~~~~W~~~~---~~p~~r~~~~~~~~~~~iyv~GG~~~~-~~~~~~~~~d~~~~~W~~~~---~~p~~r~~~ 149 (302)
T 2xn4_A 77 RTVDSYDPVKDQWTSVA---NMRDRRSTLGAAVLNGLLYAVGGFDGS-TGLSSVEAYNIKSNEWFHVA---PMNTRRSSV 149 (302)
T ss_dssp CCEEEEETTTTEEEEEC---CCSSCCBSCEEEEETTEEEEEEEECSS-CEEEEEEEEETTTTEEEEEC---CCSSCCBSC
T ss_pred cceEEECCCCCceeeCC---CCCccccceEEEEECCEEEEEcCCCCC-ccCceEEEEeCCCCeEeecC---CCCCcccCc
Confidence 78999999999999998 499999999999999999999999765 46789999999999999997 889999999
Q ss_pred EEEEECCcEEEEEcCCCCC--CCCCeEEEEECCCCcEEEeecCCCCCCCCcceEEEEECCEEEEEecCCCCCccCeEEEE
Q 005043 253 VAALYDDKNLLIFGGSSKS--KTLNDLYSLDFETMIWTRIKIRGFHPSPRAGCCGVLCGTKWYIAGGGSRKKRHAETLIF 330 (717)
Q Consensus 253 aa~~~~~~~lyV~GG~~~~--~~~ndv~~yd~~t~~W~~v~~~g~~P~~R~~~sav~~~~~IyV~GG~~~~~~~~dv~~y 330 (717)
++++++++ |||+||.+.. ..++++++||+.+++|+.++.+ |.+|.+|+++.++++|||+||.+.....+++++|
T Consensus 150 ~~~~~~~~-iyv~GG~~~~~~~~~~~~~~yd~~~~~W~~~~~~---p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~y 225 (302)
T 2xn4_A 150 GVGVVGGL-LYAVGGYDVASRQCLSTVECYNATTNEWTYIAEM---STRRSGAGVGVLNNLLYAVGGHDGPLVRKSVEVY 225 (302)
T ss_dssp EEEEETTE-EEEECCEETTTTEECCCEEEEETTTTEEEEECCC---SSCCBSCEEEEETTEEEEECCBSSSSBCCCEEEE
T ss_pred eEEEECCE-EEEEeCCCCCCCccccEEEEEeCCCCcEEECCCC---ccccccccEEEECCEEEEECCCCCCcccceEEEE
Confidence 99999888 9999998654 3578999999999999999654 8899999999999999999999877778899999
Q ss_pred ECCCCcEEEeecCCCCCCCCCcceEEEEEEeCCCcEEEEEcCCCCCC-CCeEEEEEccCCcccC
Q 005043 331 DILKGEWSVAITSPSSSVTSNKGFTLVLVQHKEKDFLVAFGGIKKEP-SNQVEVLSIEKNESSM 393 (717)
Q Consensus 331 D~~t~~W~~l~~~p~~~~~~r~g~s~v~v~~~~~~~I~v~GG~~~~~-~n~v~vyd~~~~eW~~ 393 (717)
|+.+++|+.++ ..+.+|.+|+++.+ ++.||++||.++.. .+++++||+.+++|..
T Consensus 226 d~~~~~W~~~~----~~~~~r~~~~~~~~----~~~i~v~GG~~~~~~~~~v~~yd~~~~~W~~ 281 (302)
T 2xn4_A 226 DPTTNAWRQVA----DMNMCRRNAGVCAV----NGLLYVVGGDDGSCNLASVEYYNPTTDKWTV 281 (302)
T ss_dssp ETTTTEEEEEC----CCSSCCBSCEEEEE----TTEEEEECCBCSSSBCCCEEEEETTTTEEEE
T ss_pred eCCCCCEeeCC----CCCCccccCeEEEE----CCEEEEECCcCCCcccccEEEEcCCCCeEEE
Confidence 99999999987 34567889998888 78999999987554 8899999999999865
No 8
>2woz_A Kelch repeat and BTB domain-containing protein 10; protein binding, invasion and metastasis, UBL conjugation pathway, UBL protein folding; 2.00A {Rattus norvegicus}
Probab=100.00 E-value=7.4e-42 Score=364.59 Aligned_cols=293 Identities=19% Similarity=0.243 Sum_probs=247.9
Q ss_pred CCCccCCCCCEEEEEcCCCCCCCCccccccccccCCCCCCCCCeEEeeecCCCCCCcceeEEEEECCEEEEEcccCC--C
Q 005043 33 PKRNSNPNSECVAPSSNHADDRDCECTIAGPEVSNGTSGNSENWMVLSIAGDKPIPRFNHAAAVIGNKMIVVGGESG--N 110 (717)
Q Consensus 33 ~~r~s~~~~~~i~l~GG~~~~~~~~~~~~~~~~~~~~~~~s~~W~~l~~~g~~P~~R~~haav~~~~~lyV~GG~~~--~ 110 (717)
.+|......+.||++||.. ...|++ .+++|...+ .+.|.+|.+|+++.++++|||+||... .
T Consensus 7 ~~r~~~~~~~~i~~~GG~~--------~~~yd~------~~~~W~~~~--~~~~~~r~~~~~~~~~~~lyv~GG~~~~~~ 70 (318)
T 2woz_A 7 IPRHGMFVKDLILLVNDTA--------AVAYDP------MENECYLTA--LAEQIPRNHSSIVTQQNQVYVVGGLYVDEE 70 (318)
T ss_dssp SCCCCCSEEEEEEEECSSE--------EEEEET------TTTEEEEEE--ECTTSCSSEEEEECSSSCEEEEESSCC---
T ss_pred cccccceecchhhhccccc--------eEEECC------CCCceeccc--CCccCCccceEEEEECCEEEEECCcccCcc
Confidence 4566665667899999931 234665 889999854 234578999999999999999999531 1
Q ss_pred ----CCcccEEEEEcCCCceEEccccccCCCCCCCCCCCcccceEEEEECCEEEEEeccCC-CCCCceEEEEEECCCCcE
Q 005043 111 ----GLLDDVQVLNFDRFSWTAASSKLYLSPSSLPLKIPACRGHSLISWGKKVLLVGGKTD-SGSDRVSVWTFDTETECW 185 (717)
Q Consensus 111 ----~~~~~v~~yd~~t~~W~~l~~~~~~~~~~~~~~~p~r~~hs~v~~~~~Iyv~GG~~~-~~~~~~~v~~yD~~t~~W 185 (717)
...+++++||+.+++|..++++ +.+|..|++++++++|||+||... .....+++|+||+.+++|
T Consensus 71 ~~~~~~~~~~~~~d~~~~~W~~~~~~-----------p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~yd~~~~~W 139 (318)
T 2woz_A 71 NKDQPLQSYFFQLDNVSSEWVGLPPL-----------PSARCLFGLGEVDDKIYVVAGKDLQTEASLDSVLCYDPVAAKW 139 (318)
T ss_dssp ----CCCBEEEEEETTTTEEEECSCB-----------SSCBCSCEEEEETTEEEEEEEEBTTTCCEEEEEEEEETTTTEE
T ss_pred ccCCCccccEEEEeCCCCcEEECCCC-----------CccccccceEEECCEEEEEcCccCCCCcccceEEEEeCCCCCE
Confidence 1234699999999999999874 345778999999999999999864 345678999999999999
Q ss_pred EEeeecCCCCCCceeeEEEEECCEEEEEccccCCCCCcCcEEEEEcCCCceEeccCCCCCCCCCcccEEEEECCcEEEEE
Q 005043 186 SVVEAKGDIPVARSGHTVVRASSVLILFGGEDGKRRKLNDLHMFDLKSLTWLPLHCTGTGPSPRSNHVAALYDDKNLLIF 265 (717)
Q Consensus 186 ~~l~~~g~~P~~R~~hs~~~~~~~Lyv~GG~~~~~~~~~~v~~yD~~t~~W~~l~~~g~~P~~R~~~aa~~~~~~~lyV~ 265 (717)
+.++ .+|.+|.+|++++++++||++||.......++++++||+.+++|+.++ ++|.+|..|++++++++ |||+
T Consensus 140 ~~~~---~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~yd~~~~~W~~~~---~~p~~r~~~~~~~~~~~-iyv~ 212 (318)
T 2woz_A 140 SEVK---NLPIKVYGHNVISHNGMIYCLGGKTDDKKCTNRVFIYNPKKGDWKDLA---PMKTPRSMFGVAIHKGK-IVIA 212 (318)
T ss_dssp EEEC---CCSSCEESCEEEEETTEEEEECCEESSSCBCCCEEEEETTTTEEEEEC---CCSSCCBSCEEEEETTE-EEEE
T ss_pred eECC---CCCCcccccEEEEECCEEEEEcCCCCCCCccceEEEEcCCCCEEEECC---CCCCCcccceEEEECCE-EEEE
Confidence 9997 489999999999999999999999766667899999999999999997 89999999999999988 9999
Q ss_pred cCCCCCCCCCeEEEEECCCCcEEEeecCCCCCCCCcceEEEEECCEEEEEecCCCC---------CccCeEEEEECCCCc
Q 005043 266 GGSSKSKTLNDLYSLDFETMIWTRIKIRGFHPSPRAGCCGVLCGTKWYIAGGGSRK---------KRHAETLIFDILKGE 336 (717)
Q Consensus 266 GG~~~~~~~ndv~~yd~~t~~W~~v~~~g~~P~~R~~~sav~~~~~IyV~GG~~~~---------~~~~dv~~yD~~t~~ 336 (717)
||.+.....+++++||+.+++|+.+..+ |.+|..|+++.++++|||+||.+.. ...+++|+||+.+++
T Consensus 213 GG~~~~~~~~~~~~yd~~~~~W~~~~~~---p~~r~~~~~~~~~~~i~v~GG~~~~~~~~~~~~~~~~~~v~~yd~~~~~ 289 (318)
T 2woz_A 213 GGVTEDGLSASVEAFDLKTNKWEVMTEF---PQERSSISLVSLAGSLYAIGGFAMIQLESKEFAPTEVNDIWKYEDDKKE 289 (318)
T ss_dssp EEEETTEEEEEEEEEETTTCCEEECCCC---SSCCBSCEEEEETTEEEEECCBCCBC----CCBCCBCCCEEEEETTTTE
T ss_pred cCcCCCCccceEEEEECCCCeEEECCCC---CCcccceEEEEECCEEEEECCeeccCCCCceeccceeeeEEEEeCCCCE
Confidence 9998777788999999999999999664 8899999999999999999998642 346899999999999
Q ss_pred EEEeecCCCCCCCCCcceEEEEEEeCCCcEEEEEcC
Q 005043 337 WSVAITSPSSSVTSNKGFTLVLVQHKEKDFLVAFGG 372 (717)
Q Consensus 337 W~~l~~~p~~~~~~r~g~s~v~v~~~~~~~I~v~GG 372 (717)
|+.+. +.+|.+|+++++ +++||++..
T Consensus 290 W~~~~------~~~r~~~~~~~~----~~~iyi~~~ 315 (318)
T 2woz_A 290 WAGML------KEIRYASGASCL----ATRLNLFKL 315 (318)
T ss_dssp EEEEE------SCCGGGTTCEEE----EEEEEGGGC
T ss_pred ehhhc------ccccccccceee----CCEEEEEEe
Confidence 99982 457889999988 678887743
No 9
>4asc_A Kelch repeat and BTB domain-containing protein 5; protein binding, cytoskeleton; 1.78A {Homo sapiens}
Probab=100.00 E-value=6.3e-42 Score=364.66 Aligned_cols=284 Identities=15% Similarity=0.203 Sum_probs=241.7
Q ss_pred CEEEEEcCCCCCCCCccccccccccCCCCCCCCCeEEeeecCCCCCCcceeEEEEECCEEEEEcccC----C--CCCccc
Q 005043 42 ECVAPSSNHADDRDCECTIAGPEVSNGTSGNSENWMVLSIAGDKPIPRFNHAAAVIGNKMIVVGGES----G--NGLLDD 115 (717)
Q Consensus 42 ~~i~l~GG~~~~~~~~~~~~~~~~~~~~~~~s~~W~~l~~~g~~P~~R~~haav~~~~~lyV~GG~~----~--~~~~~~ 115 (717)
+.|+++|| + ....|++ .+++|...+ .+.|.+|.+|++++++++|||+||.. . ....++
T Consensus 5 ~~l~~~GG--~------~~~~yd~------~~~~W~~~~--~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~ 68 (315)
T 4asc_A 5 DLIFMISE--E------GAVAYDP------AANECYCAS--LSSQVPKNHVSLVTKENQVFVAGGLFYNEDNKEDPMSAY 68 (315)
T ss_dssp EEEEEEET--T------EEEEEET------TTTEEEEEE--CCCCSCSSEEEEECTTCCEEEEEEEEECSSCSSSCEEEE
T ss_pred eEEEEEcC--C------ceEEECC------CCCeEecCC--CCCCCCccceEEEEECCEEEEEcCcccCCCCCccccccc
Confidence 46999999 1 1233665 888998732 23467999999999999999999962 1 223467
Q ss_pred EEEEEcCCCceEEccccccCCCCCCCCCCCcccceEEEEECCEEEEEeccCC--CCCCceEEEEEECCCCcEEEeeecCC
Q 005043 116 VQVLNFDRFSWTAASSKLYLSPSSLPLKIPACRGHSLISWGKKVLLVGGKTD--SGSDRVSVWTFDTETECWSVVEAKGD 193 (717)
Q Consensus 116 v~~yd~~t~~W~~l~~~~~~~~~~~~~~~p~r~~hs~v~~~~~Iyv~GG~~~--~~~~~~~v~~yD~~t~~W~~l~~~g~ 193 (717)
+++||+.+++|..++++ +.+|.+|++++++++|||+||... .....+++|+||+.+++|+.++ +
T Consensus 69 ~~~~d~~~~~W~~~~~~-----------p~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~~~~d~~~~~W~~~~---~ 134 (315)
T 4asc_A 69 FLQFDHLDSEWLGMPPL-----------PSPRCLFGLGEALNSIYVVGGREIKDGERCLDSVMCYDRLSFKWGESD---P 134 (315)
T ss_dssp EEEEETTTTEEEECCCB-----------SSCEESCEEEEETTEEEEECCEESSTTCCBCCCEEEEETTTTEEEECC---C
T ss_pred eEEecCCCCeEEECCCC-----------CcchhceeEEEECCEEEEEeCCcCCCCCcccceEEEECCCCCcEeECC---C
Confidence 99999999999999874 356788999999999999999863 3556789999999999999998 4
Q ss_pred CCCCceeeEEEEECCEEEEEccccCCCCCcCcEEEEEcCCCceEeccCCCCCCCCCcccEEEEECCcEEEEEcCCCCCCC
Q 005043 194 IPVARSGHTVVRASSVLILFGGEDGKRRKLNDLHMFDLKSLTWLPLHCTGTGPSPRSNHVAALYDDKNLLIFGGSSKSKT 273 (717)
Q Consensus 194 ~P~~R~~hs~~~~~~~Lyv~GG~~~~~~~~~~v~~yD~~t~~W~~l~~~g~~P~~R~~~aa~~~~~~~lyV~GG~~~~~~ 273 (717)
+|.+|.+|+++.++++|||+||.+.....++++++||+.+++|+.++ ++|.+|..|++++++++ |||+||.+....
T Consensus 135 ~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~yd~~~~~W~~~~---~~p~~r~~~~~~~~~~~-iyv~GG~~~~~~ 210 (315)
T 4asc_A 135 LPYVVYGHTVLSHMDLVYVIGGKGSDRKCLNKMCVYDPKKFEWKELA---PMQTARSLFGATVHDGR-IIVAAGVTDTGL 210 (315)
T ss_dssp CSSCCBSCEEEEETTEEEEECCBCTTSCBCCCEEEEETTTTEEEECC---CCSSCCBSCEEEEETTE-EEEEEEECSSSE
T ss_pred CCCcccceeEEEECCEEEEEeCCCCCCcccceEEEEeCCCCeEEECC---CCCCchhceEEEEECCE-EEEEeccCCCCc
Confidence 89999999999999999999999666678999999999999999997 89999999999999888 999999988778
Q ss_pred CCeEEEEECCCCcEEEeecCCCCCCCCcceEEEEECCEEEEEecCCCC---------CccCeEEEEECCCCcEEEeecCC
Q 005043 274 LNDLYSLDFETMIWTRIKIRGFHPSPRAGCCGVLCGTKWYIAGGGSRK---------KRHAETLIFDILKGEWSVAITSP 344 (717)
Q Consensus 274 ~ndv~~yd~~t~~W~~v~~~g~~P~~R~~~sav~~~~~IyV~GG~~~~---------~~~~dv~~yD~~t~~W~~l~~~p 344 (717)
++++++||+.+++|+.++.+ |.+|.+|+++.++++|||+||.+.. ...+++++||+.+++|+.+.
T Consensus 211 ~~~~~~yd~~~~~W~~~~~~---p~~r~~~~~~~~~~~l~v~GG~~~~~~~~~~~~~~~~~~v~~yd~~~~~W~~~~--- 284 (315)
T 4asc_A 211 TSSAEVYSITDNKWAPFEAF---PQERSSLSLVSLVGTLYAIGGFATLETESGELVPTELNDIWRYNEEEKKWEGVL--- 284 (315)
T ss_dssp EEEEEEEETTTTEEEEECCC---SSCCBSCEEEEETTEEEEEEEEEEEECTTSCEEEEEEEEEEEEETTTTEEEEEE---
T ss_pred cceEEEEECCCCeEEECCCC---CCcccceeEEEECCEEEEECCccccCcCCccccccccCcEEEecCCCChhhhhc---
Confidence 89999999999999999754 8999999999999999999998531 34678999999999999983
Q ss_pred CCCCCCCcceEEEEEEeCCCcEEEEEcC
Q 005043 345 SSSVTSNKGFTLVLVQHKEKDFLVAFGG 372 (717)
Q Consensus 345 ~~~~~~r~g~s~v~v~~~~~~~I~v~GG 372 (717)
+.+|.+++++++ ++.||++..
T Consensus 285 ---~~~r~~~~~~~~----~~~l~v~~~ 305 (315)
T 4asc_A 285 ---REIAYAAGATFL----PVRLNVLRL 305 (315)
T ss_dssp ---SCSSCCSSCEEE----EEEECGGGS
T ss_pred ---cCCcCccceEEe----CCEEEEEEe
Confidence 346888888888 678888765
No 10
>2vpj_A Kelch-like protein 12; adaptor protein, WNT signaling pathway, protein-binding, UBI degradation, UBL conjugation pathway, CUL3, kelch repeat; 1.85A {Homo sapiens}
Probab=100.00 E-value=9e-41 Score=352.55 Aligned_cols=267 Identities=19% Similarity=0.270 Sum_probs=237.5
Q ss_pred EECCEEEEEcc-cCCCCCcccEEEEEcCCCceEEccccccCCCCCCCCCCCcccceEEEEECCEEEEEeccCCCCCCceE
Q 005043 96 VIGNKMIVVGG-ESGNGLLDDVQVLNFDRFSWTAASSKLYLSPSSLPLKIPACRGHSLISWGKKVLLVGGKTDSGSDRVS 174 (717)
Q Consensus 96 ~~~~~lyV~GG-~~~~~~~~~v~~yd~~t~~W~~l~~~~~~~~~~~~~~~p~r~~hs~v~~~~~Iyv~GG~~~~~~~~~~ 174 (717)
.++++|||||| ......++++++||+.+++|..++++ +.+|.+|+++.++++||++||.. .....++
T Consensus 12 ~~~~~i~~~GG~~~~~~~~~~~~~~d~~~~~W~~~~~~-----------p~~r~~~~~~~~~~~l~v~GG~~-~~~~~~~ 79 (301)
T 2vpj_A 12 GANEVLLVVGGFGSQQSPIDVVEKYDPKTQEWSFLPSI-----------TRKRRYVASVSLHDRIYVIGGYD-GRSRLSS 79 (301)
T ss_dssp -CCEEEEEECCEETTTEECCCEEEEETTTTEEEECCCC-----------SSCCBSCEEEEETTEEEEECCBC-SSCBCCC
T ss_pred cCCCEEEEEeCccCCCcceeEEEEEcCCCCeEEeCCCC-----------ChhhccccEEEECCEEEEEcCCC-CCccCce
Confidence 36889999999 56566789999999999999999863 33677899999999999999986 3445778
Q ss_pred EEEEECCCCc---EEEeeecCCCCCCceeeEEEEECCEEEEEccccCCCCCcCcEEEEEcCCCceEeccCCCCCCCCCcc
Q 005043 175 VWTFDTETEC---WSVVEAKGDIPVARSGHTVVRASSVLILFGGEDGKRRKLNDLHMFDLKSLTWLPLHCTGTGPSPRSN 251 (717)
Q Consensus 175 v~~yD~~t~~---W~~l~~~g~~P~~R~~hs~~~~~~~Lyv~GG~~~~~~~~~~v~~yD~~t~~W~~l~~~g~~P~~R~~ 251 (717)
+|+||+.+++ |+.++ .+|.+|..|+++.++++||++||.+.. ..++++++||+.+++|+.++ ++|.+|..
T Consensus 80 ~~~~d~~~~~~~~W~~~~---~~p~~r~~~~~~~~~~~lyv~GG~~~~-~~~~~~~~~d~~~~~W~~~~---~~p~~r~~ 152 (301)
T 2vpj_A 80 VECLDYTADEDGVWYSVA---PMNVRRGLAGATTLGDMIYVSGGFDGS-RRHTSMERYDPNIDQWSMLG---DMQTAREG 152 (301)
T ss_dssp EEEEETTCCTTCCCEEEC---CCSSCCBSCEEEEETTEEEEECCBCSS-CBCCEEEEEETTTTEEEEEE---ECSSCCBS
T ss_pred EEEEECCCCCCCeeEECC---CCCCCccceeEEEECCEEEEEcccCCC-cccceEEEEcCCCCeEEECC---CCCCCccc
Confidence 9999999999 99997 589999999999999999999999865 45899999999999999997 78999999
Q ss_pred cEEEEECCcEEEEEcCCCCCCCCCeEEEEECCCCcEEEeecCCCCCCCCcceEEEEECCEEEEEecCCCCCccCeEEEEE
Q 005043 252 HVAALYDDKNLLIFGGSSKSKTLNDLYSLDFETMIWTRIKIRGFHPSPRAGCCGVLCGTKWYIAGGGSRKKRHAETLIFD 331 (717)
Q Consensus 252 ~aa~~~~~~~lyV~GG~~~~~~~ndv~~yd~~t~~W~~v~~~g~~P~~R~~~sav~~~~~IyV~GG~~~~~~~~dv~~yD 331 (717)
|++++++++ ||++||.+....++++++||+.+++|+.++.+ |.+|.+|+++.++++|||+||.+.....+++++||
T Consensus 153 ~~~~~~~~~-iyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~---p~~r~~~~~~~~~~~i~v~GG~~~~~~~~~v~~yd 228 (301)
T 2vpj_A 153 AGLVVASGV-IYCLGGYDGLNILNSVEKYDPHTGHWTNVTPM---ATKRSGAGVALLNDHIYVVGGFDGTAHLSSVEAYN 228 (301)
T ss_dssp CEEEEETTE-EEEECCBCSSCBCCCEEEEETTTTEEEEECCC---SSCCBSCEEEEETTEEEEECCBCSSSBCCCEEEEE
T ss_pred ceEEEECCE-EEEECCCCCCcccceEEEEeCCCCcEEeCCCC---CcccccceEEEECCEEEEEeCCCCCcccceEEEEe
Confidence 999999888 99999998877899999999999999999654 88999999999999999999998777789999999
Q ss_pred CCCCcEEEeecCCCCCCCCCcceEEEEEEeCCCcEEEEEcCCCCCC-CCeEEEEEccCCcccC
Q 005043 332 ILKGEWSVAITSPSSSVTSNKGFTLVLVQHKEKDFLVAFGGIKKEP-SNQVEVLSIEKNESSM 393 (717)
Q Consensus 332 ~~t~~W~~l~~~p~~~~~~r~g~s~v~v~~~~~~~I~v~GG~~~~~-~n~v~vyd~~~~eW~~ 393 (717)
+.+++|+.++ ..|.+|.+|+++++ +++||++||.++.. .+++++||+.+++|..
T Consensus 229 ~~~~~W~~~~----~~p~~r~~~~~~~~----~~~i~v~GG~~~~~~~~~v~~yd~~~~~W~~ 283 (301)
T 2vpj_A 229 IRTDSWTTVT----SMTTPRCYVGATVL----RGRLYAIAGYDGNSLLSSIECYDPIIDSWEV 283 (301)
T ss_dssp TTTTEEEEEC----CCSSCCBSCEEEEE----TTEEEEECCBCSSSBEEEEEEEETTTTEEEE
T ss_pred CCCCcEEECC----CCCCcccceeEEEE----CCEEEEEcCcCCCcccccEEEEcCCCCeEEE
Confidence 9999999986 34568899999888 78999999987654 6899999999999865
No 11
>4asc_A Kelch repeat and BTB domain-containing protein 5; protein binding, cytoskeleton; 1.78A {Homo sapiens}
Probab=100.00 E-value=2.4e-40 Score=352.47 Aligned_cols=262 Identities=16% Similarity=0.215 Sum_probs=227.2
Q ss_pred CCEEEEEcccCCCCCcccEEEEEcCCCceEEccccccCCCCCCCCCCCcccceEEEEECCEEEEEeccC----C-CCCCc
Q 005043 98 GNKMIVVGGESGNGLLDDVQVLNFDRFSWTAASSKLYLSPSSLPLKIPACRGHSLISWGKKVLLVGGKT----D-SGSDR 172 (717)
Q Consensus 98 ~~~lyV~GG~~~~~~~~~v~~yd~~t~~W~~l~~~~~~~~~~~~~~~p~r~~hs~v~~~~~Iyv~GG~~----~-~~~~~ 172 (717)
.+.||++|| +++++||+.+++|.. +++ ..+.+|.+|++++++++|||+||.. . .....
T Consensus 4 ~~~l~~~GG-------~~~~~yd~~~~~W~~-~~~---------~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~ 66 (315)
T 4asc_A 4 QDLIFMISE-------EGAVAYDPAANECYC-ASL---------SSQVPKNHVSLVTKENQVFVAGGLFYNEDNKEDPMS 66 (315)
T ss_dssp EEEEEEEET-------TEEEEEETTTTEEEE-EEC---------CCCSCSSEEEEECTTCCEEEEEEEEECSSCSSSCEE
T ss_pred ceEEEEEcC-------CceEEECCCCCeEec-CCC---------CCCCCccceEEEEECCEEEEEcCcccCCCCCccccc
Confidence 467999999 579999999999987 442 1234788999999999999999973 1 22234
Q ss_pred eEEEEEECCCCcEEEeeecCCCCCCceeeEEEEECCEEEEEccccC--CCCCcCcEEEEEcCCCceEeccCCCCCCCCCc
Q 005043 173 VSVWTFDTETECWSVVEAKGDIPVARSGHTVVRASSVLILFGGEDG--KRRKLNDLHMFDLKSLTWLPLHCTGTGPSPRS 250 (717)
Q Consensus 173 ~~v~~yD~~t~~W~~l~~~g~~P~~R~~hs~~~~~~~Lyv~GG~~~--~~~~~~~v~~yD~~t~~W~~l~~~g~~P~~R~ 250 (717)
+++|+||+.+++|+.++ .+|.+|.+|+++.++++|||+||.+. ....++++++||+.+++|+.++ ++|.+|.
T Consensus 67 ~~~~~~d~~~~~W~~~~---~~p~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~~~~d~~~~~W~~~~---~~p~~r~ 140 (315)
T 4asc_A 67 AYFLQFDHLDSEWLGMP---PLPSPRCLFGLGEALNSIYVVGGREIKDGERCLDSVMCYDRLSFKWGESD---PLPYVVY 140 (315)
T ss_dssp EEEEEEETTTTEEEECC---CBSSCEESCEEEEETTEEEEECCEESSTTCCBCCCEEEEETTTTEEEECC---CCSSCCB
T ss_pred cceEEecCCCCeEEECC---CCCcchhceeEEEECCEEEEEeCCcCCCCCcccceEEEECCCCCcEeECC---CCCCccc
Confidence 56999999999999987 48999999999999999999999863 3467899999999999999997 8999999
Q ss_pred ccEEEEECCcEEEEEcCC-CCCCCCCeEEEEECCCCcEEEeecCCCCCCCCcceEEEEECCEEEEEecCCCCCccCeEEE
Q 005043 251 NHVAALYDDKNLLIFGGS-SKSKTLNDLYSLDFETMIWTRIKIRGFHPSPRAGCCGVLCGTKWYIAGGGSRKKRHAETLI 329 (717)
Q Consensus 251 ~~aa~~~~~~~lyV~GG~-~~~~~~ndv~~yd~~t~~W~~v~~~g~~P~~R~~~sav~~~~~IyV~GG~~~~~~~~dv~~ 329 (717)
.|+++.++++ |||+||. .....++++++||+.+++|+.++.+ |.+|..|+++.++++|||+||.+.....+++++
T Consensus 141 ~~~~~~~~~~-iyv~GG~~~~~~~~~~~~~yd~~~~~W~~~~~~---p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~ 216 (315)
T 4asc_A 141 GHTVLSHMDL-VYVIGGKGSDRKCLNKMCVYDPKKFEWKELAPM---QTARSLFGATVHDGRIIVAAGVTDTGLTSSAEV 216 (315)
T ss_dssp SCEEEEETTE-EEEECCBCTTSCBCCCEEEEETTTTEEEECCCC---SSCCBSCEEEEETTEEEEEEEECSSSEEEEEEE
T ss_pred ceeEEEECCE-EEEEeCCCCCCcccceEEEEeCCCCeEEECCCC---CCchhceEEEEECCEEEEEeccCCCCccceEEE
Confidence 9999999998 9999999 5567789999999999999999764 889999999999999999999987777889999
Q ss_pred EECCCCcEEEeecCCCCCCCCCcceEEEEEEeCCCcEEEEEcCCCC----------CCCCeEEEEEccCCcccCc
Q 005043 330 FDILKGEWSVAITSPSSSVTSNKGFTLVLVQHKEKDFLVAFGGIKK----------EPSNQVEVLSIEKNESSMG 394 (717)
Q Consensus 330 yD~~t~~W~~l~~~p~~~~~~r~g~s~v~v~~~~~~~I~v~GG~~~----------~~~n~v~vyd~~~~eW~~~ 394 (717)
||+.+++|+.++ +.|.+|.+|+++++ +++||++||.++ ...+++++||+.+++|...
T Consensus 217 yd~~~~~W~~~~----~~p~~r~~~~~~~~----~~~l~v~GG~~~~~~~~~~~~~~~~~~v~~yd~~~~~W~~~ 283 (315)
T 4asc_A 217 YSITDNKWAPFE----AFPQERSSLSLVSL----VGTLYAIGGFATLETESGELVPTELNDIWRYNEEEKKWEGV 283 (315)
T ss_dssp EETTTTEEEEEC----CCSSCCBSCEEEEE----TTEEEEEEEEEEEECTTSCEEEEEEEEEEEEETTTTEEEEE
T ss_pred EECCCCeEEECC----CCCCcccceeEEEE----CCEEEEECCccccCcCCccccccccCcEEEecCCCChhhhh
Confidence 999999999986 35678999999988 789999999853 2367899999999998764
No 12
>2uvk_A YJHT; unknown function, hypothetical protein, sialic acid metabolism, kelch repeat, beta-propeller; HET: MSE; 1.50A {Escherichia coli}
Probab=100.00 E-value=3.3e-40 Score=357.04 Aligned_cols=280 Identities=17% Similarity=0.230 Sum_probs=228.3
Q ss_pred CCCCCcceeEEEEECCEEEEEcccCCCCCcccEEEEEcC--CCceEEccccccCCCCCCCCCCCcccceEEEEECCEEEE
Q 005043 84 DKPIPRFNHAAAVIGNKMIVVGGESGNGLLDDVQVLNFD--RFSWTAASSKLYLSPSSLPLKIPACRGHSLISWGKKVLL 161 (717)
Q Consensus 84 ~~P~~R~~haav~~~~~lyV~GG~~~~~~~~~v~~yd~~--t~~W~~l~~~~~~~~~~~~~~~p~r~~hs~v~~~~~Iyv 161 (717)
++|.+|.+|++++++++|||+||... +++++||+. +++|..+++ ++..+|.+|++++++++|||
T Consensus 5 ~lP~~r~~~~~~~~~~~iyv~GG~~~----~~~~~~d~~~~~~~W~~~~~----------~p~~~R~~~~~~~~~~~lyv 70 (357)
T 2uvk_A 5 ETPVPFKSGTGAIDNDTVYIGLGSAG----TAWYKLDTQAKDKKWTALAA----------FPGGPRDQATSAFIDGNLYV 70 (357)
T ss_dssp CCSSCCCSCEEEEETTEEEEECGGGT----TCEEEEETTSSSCCEEECCC----------CTTCCCBSCEEEEETTEEEE
T ss_pred CCCccccceEEEEECCEEEEEeCcCC----CeEEEEccccCCCCeeECCC----------CCCCcCccceEEEECCEEEE
Confidence 78999999999999999999999864 489999998 489999987 34357889999999999999
Q ss_pred EeccCC----CCCCceEEEEEECCCCcEEEeeecCCCC-CCceeeEEEEECCEEEEEccccCCC----------------
Q 005043 162 VGGKTD----SGSDRVSVWTFDTETECWSVVEAKGDIP-VARSGHTVVRASSVLILFGGEDGKR---------------- 220 (717)
Q Consensus 162 ~GG~~~----~~~~~~~v~~yD~~t~~W~~l~~~g~~P-~~R~~hs~~~~~~~Lyv~GG~~~~~---------------- 220 (717)
+||... .....+++|+||+.+++|+.+++ ++ .+|.+|++++++++|||+||.+...
T Consensus 71 ~GG~~~~~~~~~~~~~~v~~yd~~~~~W~~~~~---~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~~~ 147 (357)
T 2uvk_A 71 FGGIGKNSEGLTQVFNDVHKYNPKTNSWVKLMS---HAPMGMAGHVTFVHNGKAYVTGGVNQNIFNGYFEDLNEAGKDST 147 (357)
T ss_dssp ECCEEECTTSCEEECCCEEEEETTTTEEEECSC---CCSSCCSSEEEEEETTEEEEEECCCHHHHHHHHHHHHHHTTCHH
T ss_pred EcCCCCCCCccceeeccEEEEeCCCCcEEECCC---CCCcccccceEEEECCEEEEEeCcCCCcCcccccchhhcCCccc
Confidence 999822 23346789999999999999985 44 9999999999999999999986431
Q ss_pred -----------------CCcCcEEEEEcCCCceEeccCCCCCCCCCcc-cEEEEECCcEEEEEcCCCCC-CCCCeEEEEE
Q 005043 221 -----------------RKLNDLHMFDLKSLTWLPLHCTGTGPSPRSN-HVAALYDDKNLLIFGGSSKS-KTLNDLYSLD 281 (717)
Q Consensus 221 -----------------~~~~~v~~yD~~t~~W~~l~~~g~~P~~R~~-~aa~~~~~~~lyV~GG~~~~-~~~ndv~~yd 281 (717)
..++++++||+.+++|+.+. ++|.+|.. |++++++++ |||+||.... ...+++++||
T Consensus 148 ~~~~~~~~~~~~~~~~~~~~~~v~~yd~~~~~W~~~~---~~p~~~~~~~~~~~~~~~-iyv~GG~~~~~~~~~~v~~~d 223 (357)
T 2uvk_A 148 AIDKINAHYFDKKAEDYFFNKFLLSFDPSTQQWSYAG---ESPWYGTAGAAVVNKGDK-TWLINGEAKPGLRTDAVFELD 223 (357)
T ss_dssp HHHHHHHHHHSSCGGGGCCCCEEEEEETTTTEEEEEE---ECSSCCCBSCEEEEETTE-EEEECCEEETTEECCCEEEEE
T ss_pred chhhhhhhhccccccccCCcccEEEEeCCCCcEEECC---CCCCCCcccccEEEECCE-EEEEeeecCCCcccCceEEEE
Confidence 24689999999999999996 78876555 999999888 9999998543 3578899998
Q ss_pred C--CCCcEEEeecCCCCCCCCcceEEEEECCEEEEEecCCCC-----------------CccCeEEEEECCCCcEEEeec
Q 005043 282 F--ETMIWTRIKIRGFHPSPRAGCCGVLCGTKWYIAGGGSRK-----------------KRHAETLIFDILKGEWSVAIT 342 (717)
Q Consensus 282 ~--~t~~W~~v~~~g~~P~~R~~~sav~~~~~IyV~GG~~~~-----------------~~~~dv~~yD~~t~~W~~l~~ 342 (717)
+ .+++|+.+..+ ..|.+|.+|+++.++++|||+||.+.. ....++++||+.+++|+.+..
T Consensus 224 ~d~~~~~W~~~~~~-~~~~~~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~g~~~~~~~~~~~~~~~~yd~~~~~W~~~~~ 302 (357)
T 2uvk_A 224 FTGNNLKWNKLAPV-SSPDGVAGGFAGISNDSLIFAGGAGFKGSRENYQNGKNYAHEGLKKSYSTDIHLWHNGKWDKSGE 302 (357)
T ss_dssp CC---CEEEECCCS-STTTCCBSCEEEEETTEEEEECCEECTTHHHHHHTTCSSTTTTCCCEECCEEEECC---CEEEEE
T ss_pred ecCCCCcEEecCCC-CCCcccccceEEEECCEEEEEcCccccCCcccccccceeccccccceeeEEEEecCCCceeeCCC
Confidence 7 99999999876 234557788899999999999996432 223678999999999999873
Q ss_pred CCCCCCCCCcceEEEEEEeCCCcEEEEEcCCCCCC--CCeEEEEEccCCcccC
Q 005043 343 SPSSSVTSNKGFTLVLVQHKEKDFLVAFGGIKKEP--SNQVEVLSIEKNESSM 393 (717)
Q Consensus 343 ~p~~~~~~r~g~s~v~v~~~~~~~I~v~GG~~~~~--~n~v~vyd~~~~eW~~ 393 (717)
.|.+|.+|+++.+ +++||||||++... .+++++|+.++++|..
T Consensus 303 ----~p~~r~~~~~~~~----~~~i~v~GG~~~~~~~~~~v~~l~~~~~~~~~ 347 (357)
T 2uvk_A 303 ----LSQGRAYGVSLPW----NNSLLIIGGETAGGKAVTDSVLITVKDNKVTV 347 (357)
T ss_dssp ----CSSCCBSSEEEEE----TTEEEEEEEECGGGCEEEEEEEEEC-CCSCEE
T ss_pred ----CCCCcccceeEEe----CCEEEEEeeeCCCCCEeeeEEEEEEcCcEeEe
Confidence 4568888999887 78999999987543 7899999999999754
No 13
>2woz_A Kelch repeat and BTB domain-containing protein 10; protein binding, invasion and metastasis, UBL conjugation pathway, UBL protein folding; 2.00A {Rattus norvegicus}
Probab=100.00 E-value=9e-39 Score=340.72 Aligned_cols=270 Identities=17% Similarity=0.230 Sum_probs=228.7
Q ss_pred CCcceeEEEEECCEEEEEcccCCCCCcccEEEEEcCCCceEEccccccCCCCCCCCCCCcccceEEEEECCEEEEEeccC
Q 005043 87 IPRFNHAAAVIGNKMIVVGGESGNGLLDDVQVLNFDRFSWTAASSKLYLSPSSLPLKIPACRGHSLISWGKKVLLVGGKT 166 (717)
Q Consensus 87 ~~R~~haav~~~~~lyV~GG~~~~~~~~~v~~yd~~t~~W~~l~~~~~~~~~~~~~~~p~r~~hs~v~~~~~Iyv~GG~~ 166 (717)
.+|.++.. .+.||+|||. ++++||+.+++|... ++ ..+.+|.+|+++..+++||++||..
T Consensus 7 ~~r~~~~~---~~~i~~~GG~-------~~~~yd~~~~~W~~~-~~---------~~~~~r~~~~~~~~~~~lyv~GG~~ 66 (318)
T 2woz_A 7 IPRHGMFV---KDLILLVNDT-------AAVAYDPMENECYLT-AL---------AEQIPRNHSSIVTQQNQVYVVGGLY 66 (318)
T ss_dssp SCCCCCSE---EEEEEEECSS-------EEEEEETTTTEEEEE-EE---------CTTSCSSEEEEECSSSCEEEEESSC
T ss_pred ccccccee---cchhhhcccc-------ceEEECCCCCceecc-cC---------CccCCccceEEEEECCEEEEECCcc
Confidence 45655433 4689999994 489999999999984 32 2235677899999999999999963
Q ss_pred CC-----CCCceEEEEEECCCCcEEEeeecCCCCCCceeeEEEEECCEEEEEccccC-CCCCcCcEEEEEcCCCceEecc
Q 005043 167 DS-----GSDRVSVWTFDTETECWSVVEAKGDIPVARSGHTVVRASSVLILFGGEDG-KRRKLNDLHMFDLKSLTWLPLH 240 (717)
Q Consensus 167 ~~-----~~~~~~v~~yD~~t~~W~~l~~~g~~P~~R~~hs~~~~~~~Lyv~GG~~~-~~~~~~~v~~yD~~t~~W~~l~ 240 (717)
.. ....+++++||+.+++|+.++ .+|.+|.+|+++.++++|||+||... ....++++++||+.+++|+.++
T Consensus 67 ~~~~~~~~~~~~~~~~~d~~~~~W~~~~---~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~yd~~~~~W~~~~ 143 (318)
T 2woz_A 67 VDEENKDQPLQSYFFQLDNVSSEWVGLP---PLPSARCLFGLGEVDDKIYVVAGKDLQTEASLDSVLCYDPVAAKWSEVK 143 (318)
T ss_dssp C-------CCCBEEEEEETTTTEEEECS---CBSSCBCSCEEEEETTEEEEEEEEBTTTCCEEEEEEEEETTTTEEEEEC
T ss_pred cCccccCCCccccEEEEeCCCCcEEECC---CCCccccccceEEECCEEEEEcCccCCCCcccceEEEEeCCCCCEeECC
Confidence 21 122446999999999999987 58999999999999999999999873 3457899999999999999997
Q ss_pred CCCCCCCCCcccEEEEECCcEEEEEcCCC-CCCCCCeEEEEECCCCcEEEeecCCCCCCCCcceEEEEECCEEEEEecCC
Q 005043 241 CTGTGPSPRSNHVAALYDDKNLLIFGGSS-KSKTLNDLYSLDFETMIWTRIKIRGFHPSPRAGCCGVLCGTKWYIAGGGS 319 (717)
Q Consensus 241 ~~g~~P~~R~~~aa~~~~~~~lyV~GG~~-~~~~~ndv~~yd~~t~~W~~v~~~g~~P~~R~~~sav~~~~~IyV~GG~~ 319 (717)
++|.+|.+|++++++++ |||+||.. ....++++++||+.+++|+.++.+ |.+|..|+++.++++|||+||.+
T Consensus 144 ---~~p~~r~~~~~~~~~~~-iyv~GG~~~~~~~~~~~~~yd~~~~~W~~~~~~---p~~r~~~~~~~~~~~iyv~GG~~ 216 (318)
T 2woz_A 144 ---NLPIKVYGHNVISHNGM-IYCLGGKTDDKKCTNRVFIYNPKKGDWKDLAPM---KTPRSMFGVAIHKGKIVIAGGVT 216 (318)
T ss_dssp ---CCSSCEESCEEEEETTE-EEEECCEESSSCBCCCEEEEETTTTEEEEECCC---SSCCBSCEEEEETTEEEEEEEEE
T ss_pred ---CCCCcccccEEEEECCE-EEEEcCCCCCCCccceEEEEcCCCCEEEECCCC---CCCcccceEEEECCEEEEEcCcC
Confidence 89999999999999888 99999984 455789999999999999999754 88999999999999999999998
Q ss_pred CCCccCeEEEEECCCCcEEEeecCCCCCCCCCcceEEEEEEeCCCcEEEEEcCCCC----------CCCCeEEEEEccCC
Q 005043 320 RKKRHAETLIFDILKGEWSVAITSPSSSVTSNKGFTLVLVQHKEKDFLVAFGGIKK----------EPSNQVEVLSIEKN 389 (717)
Q Consensus 320 ~~~~~~dv~~yD~~t~~W~~l~~~p~~~~~~r~g~s~v~v~~~~~~~I~v~GG~~~----------~~~n~v~vyd~~~~ 389 (717)
.....+++++||+.+++|+.++ ..|.+|.+|+++.+ ++.||++||... ...+++|+||+.++
T Consensus 217 ~~~~~~~~~~yd~~~~~W~~~~----~~p~~r~~~~~~~~----~~~i~v~GG~~~~~~~~~~~~~~~~~~v~~yd~~~~ 288 (318)
T 2woz_A 217 EDGLSASVEAFDLKTNKWEVMT----EFPQERSSISLVSL----AGSLYAIGGFAMIQLESKEFAPTEVNDIWKYEDDKK 288 (318)
T ss_dssp TTEEEEEEEEEETTTCCEEECC----CCSSCCBSCEEEEE----TTEEEEECCBCCBC----CCBCCBCCCEEEEETTTT
T ss_pred CCCccceEEEEECCCCeEEECC----CCCCcccceEEEEE----CCEEEEECCeeccCCCCceeccceeeeEEEEeCCCC
Confidence 7777789999999999999986 34568899999888 789999999864 23789999999999
Q ss_pred cccCc
Q 005043 390 ESSMG 394 (717)
Q Consensus 390 eW~~~ 394 (717)
+|...
T Consensus 289 ~W~~~ 293 (318)
T 2woz_A 289 EWAGM 293 (318)
T ss_dssp EEEEE
T ss_pred Eehhh
Confidence 98753
No 14
>2uvk_A YJHT; unknown function, hypothetical protein, sialic acid metabolism, kelch repeat, beta-propeller; HET: MSE; 1.50A {Escherichia coli}
Probab=100.00 E-value=6.1e-38 Score=339.23 Aligned_cols=277 Identities=19% Similarity=0.259 Sum_probs=218.6
Q ss_pred ccCCCCCEEEEEcCCCCCCCCccccccccccCCCCCCCCCeEEeeecCCCC-CCcceeEEEEECCEEEEEccc-C----C
Q 005043 36 NSNPNSECVAPSSNHADDRDCECTIAGPEVSNGTSGNSENWMVLSIAGDKP-IPRFNHAAAVIGNKMIVVGGE-S----G 109 (717)
Q Consensus 36 ~s~~~~~~i~l~GG~~~~~~~~~~~~~~~~~~~~~~~s~~W~~l~~~g~~P-~~R~~haav~~~~~lyV~GG~-~----~ 109 (717)
+.+..++.||++||.... ....|++. ..+++|..++ ++| .+|.+|++++++++||||||. . .
T Consensus 14 ~~~~~~~~iyv~GG~~~~-----~~~~~d~~----~~~~~W~~~~---~~p~~~R~~~~~~~~~~~lyv~GG~~~~~~~~ 81 (357)
T 2uvk_A 14 TGAIDNDTVYIGLGSAGT-----AWYKLDTQ----AKDKKWTALA---AFPGGPRDQATSAFIDGNLYVFGGIGKNSEGL 81 (357)
T ss_dssp EEEEETTEEEEECGGGTT-----CEEEEETT----SSSCCEEECC---CCTTCCCBSCEEEEETTEEEEECCEEECTTSC
T ss_pred EEEEECCEEEEEeCcCCC-----eEEEEccc----cCCCCeeECC---CCCCCcCccceEEEECCEEEEEcCCCCCCCcc
Confidence 444448899999995432 11234441 1358999998 788 899999999999999999998 3 2
Q ss_pred CCCcccEEEEEcCCCceEEccccccCCCCCCCCCCCcccceEEEEECCEEEEEeccCCCC--------------------
Q 005043 110 NGLLDDVQVLNFDRFSWTAASSKLYLSPSSLPLKIPACRGHSLISWGKKVLLVGGKTDSG-------------------- 169 (717)
Q Consensus 110 ~~~~~~v~~yd~~t~~W~~l~~~~~~~~~~~~~~~p~r~~hs~v~~~~~Iyv~GG~~~~~-------------------- 169 (717)
...++++++||+.+++|+.++++ ++.+|.+|++++++++|||+||.....
T Consensus 82 ~~~~~~v~~yd~~~~~W~~~~~~----------~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~ 151 (357)
T 2uvk_A 82 TQVFNDVHKYNPKTNSWVKLMSH----------APMGMAGHVTFVHNGKAYVTGGVNQNIFNGYFEDLNEAGKDSTAIDK 151 (357)
T ss_dssp EEECCCEEEEETTTTEEEECSCC----------CSSCCSSEEEEEETTEEEEEECCCHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred ceeeccEEEEeCCCCcEEECCCC----------CCcccccceEEEECCEEEEEeCcCCCcCcccccchhhcCCcccchhh
Confidence 34688999999999999999984 346788999999999999999975321
Q ss_pred -------------CCceEEEEEECCCCcEEEeeecCCCCCCce-eeEEEEECCEEEEEccccCCCCCcCcEEEEEc--CC
Q 005043 170 -------------SDRVSVWTFDTETECWSVVEAKGDIPVARS-GHTVVRASSVLILFGGEDGKRRKLNDLHMFDL--KS 233 (717)
Q Consensus 170 -------------~~~~~v~~yD~~t~~W~~l~~~g~~P~~R~-~hs~~~~~~~Lyv~GG~~~~~~~~~~v~~yD~--~t 233 (717)
...+++++||+.+++|+.+++ +|.+|. +|++++++++||||||.+..+...+++++||+ .+
T Consensus 152 ~~~~~~~~~~~~~~~~~~v~~yd~~~~~W~~~~~---~p~~~~~~~~~~~~~~~iyv~GG~~~~~~~~~~v~~~d~d~~~ 228 (357)
T 2uvk_A 152 INAHYFDKKAEDYFFNKFLLSFDPSTQQWSYAGE---SPWYGTAGAAVVNKGDKTWLINGEAKPGLRTDAVFELDFTGNN 228 (357)
T ss_dssp HHHHHHSSCGGGGCCCCEEEEEETTTTEEEEEEE---CSSCCCBSCEEEEETTEEEEECCEEETTEECCCEEEEECC---
T ss_pred hhhhhccccccccCCcccEEEEeCCCCcEEECCC---CCCCCcccccEEEECCEEEEEeeecCCCcccCceEEEEecCCC
Confidence 235799999999999999974 787654 49999999999999999776566889999987 89
Q ss_pred CceEeccCCCCCCCCCcccEEEEECCcEEEEEcCCCC-----------------CCCCCeEEEEECCCCcEEEeecCCCC
Q 005043 234 LTWLPLHCTGTGPSPRSNHVAALYDDKNLLIFGGSSK-----------------SKTLNDLYSLDFETMIWTRIKIRGFH 296 (717)
Q Consensus 234 ~~W~~l~~~g~~P~~R~~~aa~~~~~~~lyV~GG~~~-----------------~~~~ndv~~yd~~t~~W~~v~~~g~~ 296 (717)
++|+.+... +.|.+|..|++++++++ |||+||.+. ...++++++||+.+++|+.+..+
T Consensus 229 ~~W~~~~~~-~~~~~~~~~~~~~~~~~-iyv~GG~~~~~~~~~~~~g~~~~~~~~~~~~~~~~yd~~~~~W~~~~~~--- 303 (357)
T 2uvk_A 229 LKWNKLAPV-SSPDGVAGGFAGISNDS-LIFAGGAGFKGSRENYQNGKNYAHEGLKKSYSTDIHLWHNGKWDKSGEL--- 303 (357)
T ss_dssp CEEEECCCS-STTTCCBSCEEEEETTE-EEEECCEECTTHHHHHHTTCSSTTTTCCCEECCEEEECC---CEEEEEC---
T ss_pred CcEEecCCC-CCCcccccceEEEECCE-EEEEcCccccCCcccccccceeccccccceeeEEEEecCCCceeeCCCC---
Confidence 999999732 23445668889999998 999999642 22346899999999999999765
Q ss_pred CCCCcceEEEEECCEEEEEecCCCCC-ccCeEEEEECCCCcEEEeec
Q 005043 297 PSPRAGCCGVLCGTKWYIAGGGSRKK-RHAETLIFDILKGEWSVAIT 342 (717)
Q Consensus 297 P~~R~~~sav~~~~~IyV~GG~~~~~-~~~dv~~yD~~t~~W~~l~~ 342 (717)
|.+|.+|+++.++++|||+||.+... ..+++++|++++++|....+
T Consensus 304 p~~r~~~~~~~~~~~i~v~GG~~~~~~~~~~v~~l~~~~~~~~~~~~ 350 (357)
T 2uvk_A 304 SQGRAYGVSLPWNNSLLIIGGETAGGKAVTDSVLITVKDNKVTVQNL 350 (357)
T ss_dssp SSCCBSSEEEEETTEEEEEEEECGGGCEEEEEEEEEC-CCSCEEEC-
T ss_pred CCCcccceeEEeCCEEEEEeeeCCCCCEeeeEEEEEEcCcEeEeeec
Confidence 88999999999999999999987653 46899999999999999863
No 15
>2zwa_A Leucine carboxyl methyltransferase 2; HET: SAH CIT; 1.70A {Saccharomyces cerevisiae} PDB: 2zw9_A* 2zzk_A*
Probab=100.00 E-value=9.5e-37 Score=359.77 Aligned_cols=283 Identities=16% Similarity=0.194 Sum_probs=231.5
Q ss_pred CCCCCcceeEEEEECCEEEEEcccCCCCCcccEEEEEcCCCceEEcc-ccccCCCCCCCCCCCcccceEEEEE--CCEEE
Q 005043 84 DKPIPRFNHAAAVIGNKMIVVGGESGNGLLDDVQVLNFDRFSWTAAS-SKLYLSPSSLPLKIPACRGHSLISW--GKKVL 160 (717)
Q Consensus 84 ~~P~~R~~haav~~~~~lyV~GG~~~~~~~~~v~~yd~~t~~W~~l~-~~~~~~~~~~~~~~p~r~~hs~v~~--~~~Iy 160 (717)
..|..|+++++ +++++|||+||... ..++++++||+.+++|..++ ++.. ...+.+|.+|+++++ +++||
T Consensus 384 ~~p~rr~g~~~-~~~~~iyv~GG~~~-~~~~~v~~yd~~~~~W~~~~~~~p~------~~~p~~R~~hs~~~~~~~~~ly 455 (695)
T 2zwa_A 384 CPINRKFGDVD-VAGNDVFYMGGSNP-YRVNEILQLSIHYDKIDMKNIEVSS------SEVPVARMCHTFTTISRNNQLL 455 (695)
T ss_dssp CTTCCBSCEEE-ECSSCEEEECCBSS-SBCCCEEEEEECSSCEEEEECCCCC------SCCCCCCBSCEEEEETTTTEEE
T ss_pred CCCCCceeEEE-EECCEEEEECCCCC-CCcCcEEEEECCCCeEEEeccCCCC------CCCCccccceEEEEEccCCEEE
Confidence 55666666554 48999999999887 78899999999999999998 5210 012557889999999 99999
Q ss_pred EEeccCCCCCCceEEEEEECCCCcEEEeeecCCCCCCceeeEEEEE-CCEEEEEccccCCCCCcCcEEEEEcCCCceEec
Q 005043 161 LVGGKTDSGSDRVSVWTFDTETECWSVVEAKGDIPVARSGHTVVRA-SSVLILFGGEDGKRRKLNDLHMFDLKSLTWLPL 239 (717)
Q Consensus 161 v~GG~~~~~~~~~~v~~yD~~t~~W~~l~~~g~~P~~R~~hs~~~~-~~~Lyv~GG~~~~~~~~~~v~~yD~~t~~W~~l 239 (717)
|+||........+++|+||+.+++|+.++ .+|.+|++|+++++ +++|||+||.+... ++++||+.+++|+.+
T Consensus 456 v~GG~~~~~~~~~dv~~yd~~t~~W~~~~---~~p~~R~~h~~~~~~~~~iyv~GG~~~~~----~v~~yd~~t~~W~~~ 528 (695)
T 2zwa_A 456 LIGGRKAPHQGLSDNWIFDMKTREWSMIK---SLSHTRFRHSACSLPDGNVLILGGVTEGP----AMLLYNVTEEIFKDV 528 (695)
T ss_dssp EECCBSSTTCBCCCCEEEETTTTEEEECC---CCSBCCBSCEEEECTTSCEEEECCBCSSC----SEEEEETTTTEEEEC
T ss_pred EEcCCCCCCCccccEEEEeCCCCcEEECC---CCCCCcccceEEEEcCCEEEEECCCCCCC----CEEEEECCCCceEEc
Confidence 99999776656889999999999999997 59999999999996 99999999997764 899999999999999
Q ss_pred cCCCCCCCCCcccEEEEEC---CcEEEEEcCCCC--CCCCCeEEEEECCCCc------EEEeecCCCCCCCCcceEEEEE
Q 005043 240 HCTGTGPSPRSNHVAALYD---DKNLLIFGGSSK--SKTLNDLYSLDFETMI------WTRIKIRGFHPSPRAGCCGVLC 308 (717)
Q Consensus 240 ~~~g~~P~~R~~~aa~~~~---~~~lyV~GG~~~--~~~~ndv~~yd~~t~~------W~~v~~~g~~P~~R~~~sav~~ 308 (717)
.+.+.+|.+|++|++++++ ++ |||+||... ...++++++||+.+++ |+.+..+ ++.+|.+|+++.+
T Consensus 529 ~~~g~~p~~r~~~~a~v~~~~~~~-iyv~GG~~~~~~~~~~~v~~yd~~~~~w~~~~~W~~~~~~--p~~~R~~~~~~~~ 605 (695)
T 2zwa_A 529 TPKDEFFQNSLVSAGLEFDPVSKQ-GIILGGGFMDQTTVSDKAIIFKYDAENATEPITVIKKLQH--PLFQRYGSQIKYI 605 (695)
T ss_dssp CCSSGGGGSCCBSCEEEEETTTTE-EEEECCBCTTSSCBCCEEEEEEECTTCSSCCEEEEEEEEC--GGGCCBSCEEEEE
T ss_pred cCCCCCCCcccceeEEEEeCCCCE-EEEECCcCCCCCeeeCcEEEEEccCCccccceEEEEcCCC--CCCCcccceEEEe
Confidence 8777799999999988876 55 999999854 3678999999999999 9998774 3588999999999
Q ss_pred C-CEEEEEecCCCCC---ccCeEEEEECCCCcEEEeecCCCC----CCCCCcceEEEEEEeCCCcEEEEEcCCC-----C
Q 005043 309 G-TKWYIAGGGSRKK---RHAETLIFDILKGEWSVAITSPSS----SVTSNKGFTLVLVQHKEKDFLVAFGGIK-----K 375 (717)
Q Consensus 309 ~-~~IyV~GG~~~~~---~~~dv~~yD~~t~~W~~l~~~p~~----~~~~r~g~s~v~v~~~~~~~I~v~GG~~-----~ 375 (717)
+ ++|||+||.+... ..+++++||+.+++|+.+.. |.. .++.+.+|+++++. +++|||+||.. +
T Consensus 606 ~~~~iyv~GG~~~~~~~~~~~~v~~yd~~t~~W~~~~~-p~~~~~~~~p~~~gh~~~~~~---~g~i~v~GGg~~cfsfG 681 (695)
T 2zwa_A 606 TPRKLLIVGGTSPSGLFDRTNSIISLDPLSETLTSIPI-SRRIWEDHSLMLAGFSLVSTS---MGTIHIIGGGATCYGFG 681 (695)
T ss_dssp ETTEEEEECCBCSSCCCCTTTSEEEEETTTTEEEECCC-CHHHHHHSCCCCSSCEEECC------CEEEECCEEECTTSC
T ss_pred CCCEEEEECCccCCCCCCCCCeEEEEECCCCeEEEeec-cccccCCCCccceeeeEEEeC---CCEEEEEeCCccCcCcc
Confidence 8 9999999986543 57899999999999996532 211 12367789988873 44899999953 2
Q ss_pred CCCCeEEEEEccC
Q 005043 376 EPSNQVEVLSIEK 388 (717)
Q Consensus 376 ~~~n~v~vyd~~~ 388 (717)
...|++|.+|+..
T Consensus 682 t~~n~i~~ldl~~ 694 (695)
T 2zwa_A 682 SVTNVGLKLIAIA 694 (695)
T ss_dssp EEECCCEEEEECC
T ss_pred ccccceEEEEEEc
Confidence 2356888888754
No 16
>2zwa_A Leucine carboxyl methyltransferase 2; HET: SAH CIT; 1.70A {Saccharomyces cerevisiae} PDB: 2zw9_A* 2zzk_A*
Probab=100.00 E-value=1e-33 Score=333.87 Aligned_cols=268 Identities=20% Similarity=0.203 Sum_probs=216.1
Q ss_pred CCCEEEEEcCCCCCCCCccccccccccCCCCCCCCCeEEee-e--cCCCCCCcceeEEEEE--CCEEEEEcccCCCC-Cc
Q 005043 40 NSECVAPSSNHADDRDCECTIAGPEVSNGTSGNSENWMVLS-I--AGDKPIPRFNHAAAVI--GNKMIVVGGESGNG-LL 113 (717)
Q Consensus 40 ~~~~i~l~GG~~~~~~~~~~~~~~~~~~~~~~~s~~W~~l~-~--~g~~P~~R~~haav~~--~~~lyV~GG~~~~~-~~ 113 (717)
.++.||++||... ........|++ .++.|..++ . .+.+|.+|.+|+++++ +++|||+||.+... .+
T Consensus 396 ~~~~iyv~GG~~~--~~~~~v~~yd~------~~~~W~~~~~~~p~~~~p~~R~~hs~~~~~~~~~lyv~GG~~~~~~~~ 467 (695)
T 2zwa_A 396 AGNDVFYMGGSNP--YRVNEILQLSI------HYDKIDMKNIEVSSSEVPVARMCHTFTTISRNNQLLLIGGRKAPHQGL 467 (695)
T ss_dssp CSSCEEEECCBSS--SBCCCEEEEEE------CSSCEEEEECCCCCSCCCCCCBSCEEEEETTTTEEEEECCBSSTTCBC
T ss_pred ECCEEEEECCCCC--CCcCcEEEEEC------CCCeEEEeccCCCCCCCCccccceEEEEEccCCEEEEEcCCCCCCCcc
Confidence 5778999999654 22222233444 788999998 3 3568999999999999 99999999987655 78
Q ss_pred ccEEEEEcCCCceEEccccccCCCCCCCCCCCcccceEEEEE-CCEEEEEeccCCCCCCceEEEEEECCCCcEEEeeecC
Q 005043 114 DDVQVLNFDRFSWTAASSKLYLSPSSLPLKIPACRGHSLISW-GKKVLLVGGKTDSGSDRVSVWTFDTETECWSVVEAKG 192 (717)
Q Consensus 114 ~~v~~yd~~t~~W~~l~~~~~~~~~~~~~~~p~r~~hs~v~~-~~~Iyv~GG~~~~~~~~~~v~~yD~~t~~W~~l~~~g 192 (717)
+++|+||+.+++|+.++++ +.+|.+|+++++ +++|||+||..... ++|+||+.+++|+.+++.+
T Consensus 468 ~dv~~yd~~t~~W~~~~~~-----------p~~R~~h~~~~~~~~~iyv~GG~~~~~----~v~~yd~~t~~W~~~~~~g 532 (695)
T 2zwa_A 468 SDNWIFDMKTREWSMIKSL-----------SHTRFRHSACSLPDGNVLILGGVTEGP----AMLLYNVTEEIFKDVTPKD 532 (695)
T ss_dssp CCCEEEETTTTEEEECCCC-----------SBCCBSCEEEECTTSCEEEECCBCSSC----SEEEEETTTTEEEECCCSS
T ss_pred ccEEEEeCCCCcEEECCCC-----------CCCcccceEEEEcCCEEEEECCCCCCC----CEEEEECCCCceEEccCCC
Confidence 9999999999999999873 346788999997 99999999986544 8999999999999999877
Q ss_pred CCCCCceeeEEEEEC---CEEEEEccccCCC-CCcCcEEEEEcCCCc------eEeccCCCCC-CCCCcccEEEEEC-Cc
Q 005043 193 DIPVARSGHTVVRAS---SVLILFGGEDGKR-RKLNDLHMFDLKSLT------WLPLHCTGTG-PSPRSNHVAALYD-DK 260 (717)
Q Consensus 193 ~~P~~R~~hs~~~~~---~~Lyv~GG~~~~~-~~~~~v~~yD~~t~~------W~~l~~~g~~-P~~R~~~aa~~~~-~~ 260 (717)
.+|.+|.+|++++++ ++|||+||....+ ..++++|+||+.+++ |+.+. .+ +.+|++|++++++ ++
T Consensus 533 ~~p~~r~~~~a~v~~~~~~~iyv~GG~~~~~~~~~~~v~~yd~~~~~w~~~~~W~~~~---~~p~~~R~~~~~~~~~~~~ 609 (695)
T 2zwa_A 533 EFFQNSLVSAGLEFDPVSKQGIILGGGFMDQTTVSDKAIIFKYDAENATEPITVIKKL---QHPLFQRYGSQIKYITPRK 609 (695)
T ss_dssp GGGGSCCBSCEEEEETTTTEEEEECCBCTTSSCBCCEEEEEEECTTCSSCCEEEEEEE---ECGGGCCBSCEEEEEETTE
T ss_pred CCCCcccceeEEEEeCCCCEEEEECCcCCCCCeeeCcEEEEEccCCccccceEEEEcC---CCCCCCcccceEEEeCCCE
Confidence 799999999988876 8999999996553 578999999999999 88886 34 5899999999999 66
Q ss_pred EEEEEcCCCCC---CCCCeEEEEECCCCcEEEeecCCC----CCCCCcceEEEEECC-EEEEEecCCC----CCccCeEE
Q 005043 261 NLLIFGGSSKS---KTLNDLYSLDFETMIWTRIKIRGF----HPSPRAGCCGVLCGT-KWYIAGGGSR----KKRHAETL 328 (717)
Q Consensus 261 ~lyV~GG~~~~---~~~ndv~~yd~~t~~W~~v~~~g~----~P~~R~~~sav~~~~-~IyV~GG~~~----~~~~~dv~ 328 (717)
|||+||.+.. ...+++++||+.+++|+.+..... ++..+.+|+++.+++ +|||+||... ....+++|
T Consensus 610 -iyv~GG~~~~~~~~~~~~v~~yd~~t~~W~~~~~p~~~~~~~~p~~~gh~~~~~~~g~i~v~GGg~~cfsfGt~~n~i~ 688 (695)
T 2zwa_A 610 -LLIVGGTSPSGLFDRTNSIISLDPLSETLTSIPISRRIWEDHSLMLAGFSLVSTSMGTIHIIGGGATCYGFGSVTNVGL 688 (695)
T ss_dssp -EEEECCBCSSCCCCTTTSEEEEETTTTEEEECCCCHHHHHHSCCCCSSCEEECC---CEEEECCEEECTTSCEEECCCE
T ss_pred -EEEECCccCCCCCCCCCeEEEEECCCCeEEEeeccccccCCCCccceeeeEEEeCCCEEEEEeCCccCcCccccccceE
Confidence 9999998654 368899999999999996543211 123677898888766 9999999642 23456888
Q ss_pred EEECCC
Q 005043 329 IFDILK 334 (717)
Q Consensus 329 ~yD~~t 334 (717)
.+|+..
T Consensus 689 ~ldl~~ 694 (695)
T 2zwa_A 689 KLIAIA 694 (695)
T ss_dssp EEEECC
T ss_pred EEEEEc
Confidence 888754
No 17
>1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A
Probab=100.00 E-value=1.8e-33 Score=329.88 Aligned_cols=337 Identities=13% Similarity=0.070 Sum_probs=247.0
Q ss_pred eeEeccccccCCCCCCCCCC----ccCCC-CCEEEEEcCCCCCCC-----CccccccccccCCCCCCCCCeEEeeecCCC
Q 005043 16 KVQLSDSAQAIRSPIRPPKR----NSNPN-SECVAPSSNHADDRD-----CECTIAGPEVSNGTSGNSENWMVLSIAGDK 85 (717)
Q Consensus 16 ~~~~~D~~~~~~~p~~~~~r----~s~~~-~~~i~l~GG~~~~~~-----~~~~~~~~~~~~~~~~~s~~W~~l~~~g~~ 85 (717)
.++.||+..+.|.++.+.|+ ..+.. +..||++||...+.. .......|++ .+++|..++ .+
T Consensus 167 ~~~~~dp~~~~W~~~~~~P~~~~~~av~~~~g~l~v~GG~~~~~~~~~~~~~~~~~~yd~------~t~~w~~~~---~~ 237 (656)
T 1k3i_A 167 SYTAPQPGLGRWGPTIDLPIVPAAAAIEPTSGRVLMWSSYRNDAFGGSPGGITLTSSWDP------STGIVSDRT---VT 237 (656)
T ss_dssp CCCCCCTTSCEEEEEEECSSCCSEEEEETTTTEEEEEEECCCTTTCSCCCSEEEEEEECT------TTCCBCCCE---EE
T ss_pred ccccCCCCCCeeeeeccCCCCceeEEEEecCCEEEEEecccccccccCCCCeEEEEEEeC------CCCcEEeCc---cc
Confidence 37789999999987655444 22222 788999999554321 0112233554 889999987 56
Q ss_pred CCCcceeE--EEE-ECCEEEEEcccCCCCCcccEEEEEcCCCceEEccccccCCCCCCCCCCCcccceEEEEE-CCEEEE
Q 005043 86 PIPRFNHA--AAV-IGNKMIVVGGESGNGLLDDVQVLNFDRFSWTAASSKLYLSPSSLPLKIPACRGHSLISW-GKKVLL 161 (717)
Q Consensus 86 P~~R~~ha--av~-~~~~lyV~GG~~~~~~~~~v~~yd~~t~~W~~l~~~~~~~~~~~~~~~p~r~~hs~v~~-~~~Iyv 161 (717)
|.+|..++ +++ .+++||++||.... ++++||+.+++|..++++ +.+|..|+++++ +++|||
T Consensus 238 ~~~~~~~~~~~~~~~~g~lyv~GG~~~~----~v~~yd~~t~~W~~~~~~-----------~~~R~~~s~~~~~dg~iyv 302 (656)
T 1k3i_A 238 VTKHDMFCPGISMDGNGQIVVTGGNDAK----KTSLYDSSSDSWIPGPDM-----------QVARGYQSSATMSDGRVFT 302 (656)
T ss_dssp ECSCCCSSCEEEECTTSCEEEECSSSTT----CEEEEEGGGTEEEECCCC-----------SSCCSSCEEEECTTSCEEE
T ss_pred CCCCCCccccccCCCCCCEEEeCCCCCC----ceEEecCcCCceeECCCC-----------CccccccceEEecCCeEEE
Confidence 76776554 333 58999999997653 799999999999999874 336778999998 999999
Q ss_pred EeccCCCCCCceEEEEEECCCCcEEEeeecC--CCCCCceeeEEEEECCEEEEEccccCC---CCCcCcEEEEEcCCCce
Q 005043 162 VGGKTDSGSDRVSVWTFDTETECWSVVEAKG--DIPVARSGHTVVRASSVLILFGGEDGK---RRKLNDLHMFDLKSLTW 236 (717)
Q Consensus 162 ~GG~~~~~~~~~~v~~yD~~t~~W~~l~~~g--~~P~~R~~hs~~~~~~~Lyv~GG~~~~---~~~~~~v~~yD~~t~~W 236 (717)
+||........+++++||+.+++|+.++..+ +++..|.. +++..++++|++||.++. ....++++.||+.++.|
T Consensus 303 ~GG~~~~~~~~~~~e~yd~~t~~W~~~~~~~~~p~~~~~~~-~~~~~~~~iyv~Gg~~g~~~~~~~~~~v~~yd~~~~~w 381 (656)
T 1k3i_A 303 IGGSWSGGVFEKNGEVYSPSSKTWTSLPNAKVNPMLTADKQ-GLYRSDNHAWLFGWKKGSVFQAGPSTAMNWYYTSGSGD 381 (656)
T ss_dssp ECCCCCSSSCCCCEEEEETTTTEEEEETTSCSGGGCCCCTT-GGGTTTCSCCEEECGGGCEEECCSSSEEEEEECSTTCE
T ss_pred EeCcccCCcccccceEeCCCCCcceeCCCcccccccccccc-ceeecCCceEEEECCCCcEEEecCccceeeeecCCcce
Confidence 9996555556789999999999999984321 25555543 555578999999998753 12467899999999998
Q ss_pred EeccCCCCCC------CCCcccEEEE---ECCcEEEEEcCCCC---CCCCC---eEEEEECCCCcEEEeecCCCCCCCCc
Q 005043 237 LPLHCTGTGP------SPRSNHVAAL---YDDKNLLIFGGSSK---SKTLN---DLYSLDFETMIWTRIKIRGFHPSPRA 301 (717)
Q Consensus 237 ~~l~~~g~~P------~~R~~~aa~~---~~~~~lyV~GG~~~---~~~~n---dv~~yd~~t~~W~~v~~~g~~P~~R~ 301 (717)
.... +..+ .++..+++++ ++++ |||+||... ...++ .+++||+.+++|..+. .+.+|.+|.
T Consensus 382 ~~~~--~~~~~~~~~~~~~~~~~av~~~~~~~~-i~v~GG~~~~~~~~~~~~~~~v~~yd~~~~~W~~~~-~~~mp~~R~ 457 (656)
T 1k3i_A 382 VKSA--GKRQSNRGVAPDAMCGNAVMYDAVKGK-ILTFGGSPDYQDSDATTNAHIITLGEPGTSPNTVFA-SNGLYFART 457 (656)
T ss_dssp EEEE--EECEETTEECCCCBTCEEEEEETTTTE-EEEECCBSSSSSSBCCCCEEEEECCSTTSCCEEEEC-TTCCSSCCB
T ss_pred eecC--CccccccccCCCCCCCceEeccCCCCe-EEEEeCCCCCCCCCcCCcceEEEcCCCCCCCeeEEc-cCCCCCCcc
Confidence 7543 1222 2344555654 3566 999999642 33445 7999999999999986 234689999
Q ss_pred ceEEEEE-CCEEEEEecCCC------CCccCeEEEEECCCCcEEEeecCCCCCCCCCcceEEEEEEeCCCcEEEEEcCCC
Q 005043 302 GCCGVLC-GTKWYIAGGGSR------KKRHAETLIFDILKGEWSVAITSPSSSVTSNKGFTLVLVQHKEKDFLVAFGGIK 374 (717)
Q Consensus 302 ~~sav~~-~~~IyV~GG~~~------~~~~~dv~~yD~~t~~W~~l~~~p~~~~~~r~g~s~v~v~~~~~~~I~v~GG~~ 374 (717)
.|+++.+ +++|||+||.+. .....++++||+.+++|+.++ ..+.+|.+|+++++.. +++||++||..
T Consensus 458 ~~~~~~l~~g~i~v~GG~~~~~~~~~~~~~~~v~~ydp~t~~W~~~~----~~~~~R~~hs~a~ll~--dg~v~v~GG~~ 531 (656)
T 1k3i_A 458 FHTSVVLPDGSTFITGGQRRGIPFEDSTPVFTPEIYVPEQDTFYKQN----PNSIVRVYHSISLLLP--DGRVFNGGGGL 531 (656)
T ss_dssp SCEEEECTTSCEEEECCBSBCCTTCCCSBCCCCEEEEGGGTEEEECC----CCSSCCCTTEEEEECT--TSCEEEEECCC
T ss_pred cCCeEECCCCCEEEECCcccCcCcCCCCcccceEEEcCCCCceeecC----CCCCccccccHhhcCC--CcEEEecCCCC
Confidence 9999888 999999999753 245688999999999999976 3456899998777632 56799999963
Q ss_pred C-C---CCCeEEEEEcc
Q 005043 375 K-E---PSNQVEVLSIE 387 (717)
Q Consensus 375 ~-~---~~n~v~vyd~~ 387 (717)
. . ..-++++|.|.
T Consensus 532 ~~~~~~~~~~~e~~~Pp 548 (656)
T 1k3i_A 532 CGDCTTNHFDAQIFTPN 548 (656)
T ss_dssp CTTCSCCCCEEEEEECG
T ss_pred CCCCCCCeeEEEEEeCh
Confidence 2 1 13467888875
No 18
>1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A
Probab=100.00 E-value=2.2e-32 Score=320.53 Aligned_cols=313 Identities=12% Similarity=0.034 Sum_probs=232.7
Q ss_pred CCCCCeEEeeecCCCCCCcceeEEEEE--CCEEEEEcccCCCC------CcccEEEEEcCCCceEEccccccCCCCCCCC
Q 005043 71 GNSENWMVLSIAGDKPIPRFNHAAAVI--GNKMIVVGGESGNG------LLDDVQVLNFDRFSWTAASSKLYLSPSSLPL 142 (717)
Q Consensus 71 ~~s~~W~~l~~~g~~P~~R~~haav~~--~~~lyV~GG~~~~~------~~~~v~~yd~~t~~W~~l~~~~~~~~~~~~~ 142 (717)
+.+++|..++ ++ ||..++++++ +++|||+||..... ..+++++||+.+++|+.++.+
T Consensus 173 p~~~~W~~~~---~~--P~~~~~~av~~~~g~l~v~GG~~~~~~~~~~~~~~~~~~yd~~t~~w~~~~~~---------- 237 (656)
T 1k3i_A 173 PGLGRWGPTI---DL--PIVPAAAAIEPTSGRVLMWSSYRNDAFGGSPGGITLTSSWDPSTGIVSDRTVT---------- 237 (656)
T ss_dssp TTSCEEEEEE---EC--SSCCSEEEEETTTTEEEEEEECCCTTTCSCCCSEEEEEEECTTTCCBCCCEEE----------
T ss_pred CCCCeeeeec---cC--CCCceeEEEEecCCEEEEEecccccccccCCCCeEEEEEEeCCCCcEEeCccc----------
Confidence 4789999987 44 4466677777 99999999976532 345799999999999998874
Q ss_pred CCCcc-cceEEEE-ECCEEEEEeccCCCCCCceEEEEEECCCCcEEEeeecCCCCCCceeeEEEEE-CCEEEEEccccCC
Q 005043 143 KIPAC-RGHSLIS-WGKKVLLVGGKTDSGSDRVSVWTFDTETECWSVVEAKGDIPVARSGHTVVRA-SSVLILFGGEDGK 219 (717)
Q Consensus 143 ~~p~r-~~hs~v~-~~~~Iyv~GG~~~~~~~~~~v~~yD~~t~~W~~l~~~g~~P~~R~~hs~~~~-~~~Lyv~GG~~~~ 219 (717)
+.++. ..+++++ .+++||++||.... ++++||+.+++|+.++ .||.+|.+|+++++ +++|||+||....
T Consensus 238 ~~~~~~~~~~~~~~~~g~lyv~GG~~~~-----~v~~yd~~t~~W~~~~---~~~~~R~~~s~~~~~dg~iyv~GG~~~~ 309 (656)
T 1k3i_A 238 VTKHDMFCPGISMDGNGQIVVTGGNDAK-----KTSLYDSSSDSWIPGP---DMQVARGYQSSATMSDGRVFTIGGSWSG 309 (656)
T ss_dssp ECSCCCSSCEEEECTTSCEEEECSSSTT-----CEEEEEGGGTEEEECC---CCSSCCSSCEEEECTTSCEEEECCCCCS
T ss_pred CCCCCCccccccCCCCCCEEEeCCCCCC-----ceEEecCcCCceeECC---CCCccccccceEEecCCeEEEEeCcccC
Confidence 23222 2333443 58999999997542 6999999999999987 59999999999999 9999999996444
Q ss_pred CCCcCcEEEEEcCCCceEeccCCC--CCCCCCcccEEEEECCcEEEEEcCCCCC----CCCCeEEEEECCCCcEEEeecC
Q 005043 220 RRKLNDLHMFDLKSLTWLPLHCTG--TGPSPRSNHVAALYDDKNLLIFGGSSKS----KTLNDLYSLDFETMIWTRIKIR 293 (717)
Q Consensus 220 ~~~~~~v~~yD~~t~~W~~l~~~g--~~P~~R~~~aa~~~~~~~lyV~GG~~~~----~~~ndv~~yd~~t~~W~~v~~~ 293 (717)
...++++++||+.+++|+.++..+ +++.+|.. +++..+++ +|++||.++. ...++++.||+.++.|......
T Consensus 310 ~~~~~~~e~yd~~t~~W~~~~~~~~~p~~~~~~~-~~~~~~~~-iyv~Gg~~g~~~~~~~~~~v~~yd~~~~~w~~~~~~ 387 (656)
T 1k3i_A 310 GVFEKNGEVYSPSSKTWTSLPNAKVNPMLTADKQ-GLYRSDNH-AWLFGWKKGSVFQAGPSTAMNWYYTSGSGDVKSAGK 387 (656)
T ss_dssp SSCCCCEEEEETTTTEEEEETTSCSGGGCCCCTT-GGGTTTCS-CCEEECGGGCEEECCSSSEEEEEECSTTCEEEEEEE
T ss_pred CcccccceEeCCCCCcceeCCCcccccccccccc-ceeecCCc-eEEEECCCCcEEEecCccceeeeecCCcceeecCCc
Confidence 457899999999999999984322 45555543 44445666 9999998653 3467999999999998865432
Q ss_pred CCC----CCCCcceEEEE---ECCEEEEEecCCC---CCccC---eEEEEECCCCcEEEeecCCCCCCCCCcceEEEEEE
Q 005043 294 GFH----PSPRAGCCGVL---CGTKWYIAGGGSR---KKRHA---ETLIFDILKGEWSVAITSPSSSVTSNKGFTLVLVQ 360 (717)
Q Consensus 294 g~~----P~~R~~~sav~---~~~~IyV~GG~~~---~~~~~---dv~~yD~~t~~W~~l~~~p~~~~~~r~g~s~v~v~ 360 (717)
... +.++..++++. .+++|||+||... ...++ .+++||+.+++|..+. ...+|.+|.+|+++++.
T Consensus 388 ~~~~~~~~~~~~~~~av~~~~~~~~i~v~GG~~~~~~~~~~~~~~~v~~yd~~~~~W~~~~--~~~mp~~R~~~~~~~l~ 465 (656)
T 1k3i_A 388 RQSNRGVAPDAMCGNAVMYDAVKGKILTFGGSPDYQDSDATTNAHIITLGEPGTSPNTVFA--SNGLYFARTFHTSVVLP 465 (656)
T ss_dssp CEETTEECCCCBTCEEEEEETTTTEEEEECCBSSSSSSBCCCCEEEEECCSTTSCCEEEEC--TTCCSSCCBSCEEEECT
T ss_pred cccccccCCCCCCCceEeccCCCCeEEEEeCCCCCCCCCcCCcceEEEcCCCCCCCeeEEc--cCCCCCCcccCCeEECC
Confidence 111 12344455553 4899999999643 23344 7899999999999975 23456789999988874
Q ss_pred eCCCcEEEEEcCCCC-------CCCCeEEEEEccCCcccC--------ccccc-cCCCCCcEEEEeeCC
Q 005043 361 HKEKDFLVAFGGIKK-------EPSNQVEVLSIEKNESSM--------GRRST-PNAKGPGQLLFEKRS 413 (717)
Q Consensus 361 ~~~~~~I~v~GG~~~-------~~~n~v~vyd~~~~eW~~--------~w~~~-~~~~~p~~~~fgG~~ 413 (717)
+++|||+||.+. ...+++++||+.+++|.. ..|.+ ....++.++++||..
T Consensus 466 ---~g~i~v~GG~~~~~~~~~~~~~~~v~~ydp~t~~W~~~~~~~~~R~~hs~a~ll~dg~v~v~GG~~ 531 (656)
T 1k3i_A 466 ---DGSTFITGGQRRGIPFEDSTPVFTPEIYVPEQDTFYKQNPNSIVRVYHSISLLLPDGRVFNGGGGL 531 (656)
T ss_dssp ---TSCEEEECCBSBCCTTCCCSBCCCCEEEEGGGTEEEECCCCSSCCCTTEEEEECTTSCEEEEECCC
T ss_pred ---CCCEEEECCcccCcCcCCCCcccceEEEcCCCCceeecCCCCCccccccHhhcCCCcEEEecCCCC
Confidence 678999999752 237899999999999943 23332 234588899999953
No 19
>3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis}
Probab=98.39 E-value=0.00021 Score=75.44 Aligned_cols=253 Identities=9% Similarity=-0.001 Sum_probs=143.3
Q ss_pred CCCcceeEEEEECCEEEEEcccCCCCCcccEEEEEcCCCce-EEccccccCCCCCCCCCCCcccceEEEE-ECCEEEEEe
Q 005043 86 PIPRFNHAAAVIGNKMIVVGGESGNGLLDDVQVLNFDRFSW-TAASSKLYLSPSSLPLKIPACRGHSLIS-WGKKVLLVG 163 (717)
Q Consensus 86 P~~R~~haav~~~~~lyV~GG~~~~~~~~~v~~yd~~t~~W-~~l~~~~~~~~~~~~~~~p~r~~hs~v~-~~~~Iyv~G 163 (717)
+.....+..+..++++|+.... .+.+.++|+.+.+- ..++. . ...+.++. .++++|+..
T Consensus 41 ~lg~~~~~i~~~~~~lyv~~~~-----~~~v~viD~~t~~~~~~i~~----------~----~~p~~i~~~~~g~lyv~~ 101 (328)
T 3dsm_A 41 KLGDVAQSMVIRDGIGWIVVNN-----SHVIFAIDINTFKEVGRITG----------F----TSPRYIHFLSDEKAYVTQ 101 (328)
T ss_dssp CCBSCEEEEEEETTEEEEEEGG-----GTEEEEEETTTCCEEEEEEC----------C----SSEEEEEEEETTEEEEEE
T ss_pred ccCccceEEEEECCEEEEEEcC-----CCEEEEEECcccEEEEEcCC----------C----CCCcEEEEeCCCeEEEEE
Confidence 3344456667789999999763 24699999998765 33322 1 11233444 678999987
Q ss_pred ccCCCCCCceEEEEEECCCCcEEEeeecCCCC-CCceeeEEEEECCEEEEEccccCCCCCcCcEEEEEcCCCceEeccCC
Q 005043 164 GKTDSGSDRVSVWTFDTETECWSVVEAKGDIP-VARSGHTVVRASSVLILFGGEDGKRRKLNDLHMFDLKSLTWLPLHCT 242 (717)
Q Consensus 164 G~~~~~~~~~~v~~yD~~t~~W~~l~~~g~~P-~~R~~hs~~~~~~~Lyv~GG~~~~~~~~~~v~~yD~~t~~W~~l~~~ 242 (717)
.. .+.+.++|+.+.+-...-..+... .....+.++..+++||+..- ...+.+.+||+.+++....-..
T Consensus 102 ~~------~~~v~~iD~~t~~~~~~i~~g~~~~~~~~p~~i~~~~~~lyv~~~-----~~~~~v~viD~~t~~~~~~i~~ 170 (328)
T 3dsm_A 102 IW------DYRIFIINPKTYEITGYIECPDMDMESGSTEQMVQYGKYVYVNCW-----SYQNRILKIDTETDKVVDELTI 170 (328)
T ss_dssp BS------CSEEEEEETTTTEEEEEEECTTCCTTTCBCCCEEEETTEEEEEEC-----TTCCEEEEEETTTTEEEEEEEC
T ss_pred CC------CCeEEEEECCCCeEEEEEEcCCccccCCCcceEEEECCEEEEEcC-----CCCCEEEEEECCCCeEEEEEEc
Confidence 43 247999999998755322212200 00022344447889999842 0235799999999876543222
Q ss_pred CCCCCCCcccEEEEECCcEEEEEcCCCCCCC-----CCeEEEEECCCCcEEEeecCCCCCCCCcceEEEEE--CCEEEEE
Q 005043 243 GTGPSPRSNHVAALYDDKNLLIFGGSSKSKT-----LNDLYSLDFETMIWTRIKIRGFHPSPRAGCCGVLC--GTKWYIA 315 (717)
Q Consensus 243 g~~P~~R~~~aa~~~~~~~lyV~GG~~~~~~-----~ndv~~yd~~t~~W~~v~~~g~~P~~R~~~sav~~--~~~IyV~ 315 (717)
+..| +.++...+..+|+......... .+.++++|+.+.+....-.. |....-..++.. ++.+|+.
T Consensus 171 g~~p-----~~i~~~~dG~l~v~~~~~~~~~~~~~~~~~v~~id~~t~~v~~~~~~---~~g~~p~~la~~~d~~~lyv~ 242 (328)
T 3dsm_A 171 GIQP-----TSLVMDKYNKMWTITDGGYEGSPYGYEAPSLYRIDAETFTVEKQFKF---KLGDWPSEVQLNGTRDTLYWI 242 (328)
T ss_dssp SSCB-----CCCEECTTSEEEEEBCCBCTTCSSCBCCCEEEEEETTTTEEEEEEEC---CTTCCCEEEEECTTSCEEEEE
T ss_pred CCCc-----cceEEcCCCCEEEEECCCccCCccccCCceEEEEECCCCeEEEEEec---CCCCCceeEEEecCCCEEEEE
Confidence 2222 2233334344776543221111 36799999999886643322 222223344444 5778887
Q ss_pred ecCCCCCccCeEEEEECCCCcEEEeecCCCCCCCCCcceEEEEEEeCCCcEEEEEcCCCCCCCCeEEEEEccCCc
Q 005043 316 GGGSRKKRHAETLIFDILKGEWSVAITSPSSSVTSNKGFTLVLVQHKEKDFLVAFGGIKKEPSNQVEVLSIEKNE 390 (717)
Q Consensus 316 GG~~~~~~~~dv~~yD~~t~~W~~l~~~p~~~~~~r~g~s~v~v~~~~~~~I~v~GG~~~~~~n~v~vyd~~~~e 390 (717)
.+ .+++||+.+.+.......+ ........+.+ ++.++.||+....+....+.|.+||+. .+
T Consensus 243 ~~--------~v~~~d~~t~~~~~~~~~~----~~~~~p~gi~v-dp~~g~lyva~~~~y~~~~~V~v~d~~-g~ 303 (328)
T 3dsm_A 243 NN--------DIWRMPVEADRVPVRPFLE----FRDTKYYGLTV-NPNNGEVYVADAIDYQQQGIVYRYSPQ-GK 303 (328)
T ss_dssp SS--------SEEEEETTCSSCCSSCSBC----CCSSCEEEEEE-CTTTCCEEEEECTTSSSEEEEEEECTT-CC
T ss_pred cc--------EEEEEECCCCceeeeeeec----CCCCceEEEEE-cCCCCeEEEEcccccccCCEEEEECCC-CC
Confidence 64 5999999887653211111 11112222333 223567888863322235589999998 44
No 20
>3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis}
Probab=97.97 E-value=0.0062 Score=63.99 Aligned_cols=232 Identities=10% Similarity=-0.068 Sum_probs=132.6
Q ss_pred cccEEEEEcCCCceEEccccccCCCCCCCCCCCcccceEEEEECCEEEEEeccCCCCCCceEEEEEECCCCcEE-Eeeec
Q 005043 113 LDDVQVLNFDRFSWTAASSKLYLSPSSLPLKIPACRGHSLISWGKKVLLVGGKTDSGSDRVSVWTFDTETECWS-VVEAK 191 (717)
Q Consensus 113 ~~~v~~yd~~t~~W~~l~~~~~~~~~~~~~~~p~r~~hs~v~~~~~Iyv~GG~~~~~~~~~~v~~yD~~t~~W~-~l~~~ 191 (717)
.+.+..||+.++++...-..... ........+.++..++++|+.... .+.+.++|+.+.+-. .++
T Consensus 16 ~~~l~~~d~~t~~~~~~i~~~~n------~~~lg~~~~~i~~~~~~lyv~~~~------~~~v~viD~~t~~~~~~i~-- 81 (328)
T 3dsm_A 16 NATLSYYDPATCEVENEVFYRAN------GFKLGDVAQSMVIRDGIGWIVVNN------SHVIFAIDINTFKEVGRIT-- 81 (328)
T ss_dssp CBEEEEEETTTTEEECSHHHHHH------SSCCBSCEEEEEEETTEEEEEEGG------GTEEEEEETTTCCEEEEEE--
T ss_pred CceEEEEECCCCEEhhhhHhhhc------CcccCccceEEEEECCEEEEEEcC------CCEEEEEECcccEEEEEcC--
Confidence 45799999999887653210000 001122345667789999999763 247999999988763 332
Q ss_pred CCCCCCceeeEEEE-ECCEEEEEccccCCCCCcCcEEEEEcCCCceEeccCCCCCCCC-CcccEEEEECCcEEEEEcCCC
Q 005043 192 GDIPVARSGHTVVR-ASSVLILFGGEDGKRRKLNDLHMFDLKSLTWLPLHCTGTGPSP-RSNHVAALYDDKNLLIFGGSS 269 (717)
Q Consensus 192 g~~P~~R~~hs~~~-~~~~Lyv~GG~~~~~~~~~~v~~yD~~t~~W~~l~~~g~~P~~-R~~~aa~~~~~~~lyV~GG~~ 269 (717)
... ..+.++. .++++|+.... .+.+.+||+.+.+-...-..+..... ..-..++. .++.+||..-.
T Consensus 82 -~~~---~p~~i~~~~~g~lyv~~~~------~~~v~~iD~~t~~~~~~i~~g~~~~~~~~p~~i~~-~~~~lyv~~~~- 149 (328)
T 3dsm_A 82 -GFT---SPRYIHFLSDEKAYVTQIW------DYRIFIINPKTYEITGYIECPDMDMESGSTEQMVQ-YGKYVYVNCWS- 149 (328)
T ss_dssp -CCS---SEEEEEEEETTEEEEEEBS------CSEEEEEETTTTEEEEEEECTTCCTTTCBCCCEEE-ETTEEEEEECT-
T ss_pred -CCC---CCcEEEEeCCCeEEEEECC------CCeEEEEECCCCeEEEEEEcCCccccCCCcceEEE-ECCEEEEEcCC-
Confidence 122 2234444 67899998642 36799999998875432111220000 01122333 44558887420
Q ss_pred CCCCCCeEEEEECCCCcEEEeecCCCCCCCCcceEEEE-ECCEEEEEecCCCCCc-----cCeEEEEECCCCcEEEeecC
Q 005043 270 KSKTLNDLYSLDFETMIWTRIKIRGFHPSPRAGCCGVL-CGTKWYIAGGGSRKKR-----HAETLIFDILKGEWSVAITS 343 (717)
Q Consensus 270 ~~~~~ndv~~yd~~t~~W~~v~~~g~~P~~R~~~sav~-~~~~IyV~GG~~~~~~-----~~dv~~yD~~t~~W~~l~~~ 343 (717)
.-+.|.++|+.+++....-..+..| +.++. -++++|+......... ...++++|+.+.+.......
T Consensus 150 ---~~~~v~viD~~t~~~~~~i~~g~~p-----~~i~~~~dG~l~v~~~~~~~~~~~~~~~~~v~~id~~t~~v~~~~~~ 221 (328)
T 3dsm_A 150 ---YQNRILKIDTETDKVVDELTIGIQP-----TSLVMDKYNKMWTITDGGYEGSPYGYEAPSLYRIDAETFTVEKQFKF 221 (328)
T ss_dssp ---TCCEEEEEETTTTEEEEEEECSSCB-----CCCEECTTSEEEEEBCCBCTTCSSCBCCCEEEEEETTTTEEEEEEEC
T ss_pred ---CCCEEEEEECCCCeEEEEEEcCCCc-----cceEEcCCCCEEEEECCCccCCccccCCceEEEEECCCCeEEEEEec
Confidence 1357999999998866543332222 22233 3688888764321111 36799999999876643222
Q ss_pred CCCCCCCCcceEEEEEEeCCCcEEEEEcCCCCCCCCeEEEEEccCCcc
Q 005043 344 PSSSVTSNKGFTLVLVQHKEKDFLVAFGGIKKEPSNQVEVLSIEKNES 391 (717)
Q Consensus 344 p~~~~~~r~g~s~v~v~~~~~~~I~v~GG~~~~~~n~v~vyd~~~~eW 391 (717)
+. .. ....+.+ .+++..||+..+ .+++||+.+.+.
T Consensus 222 ~~----g~-~p~~la~-~~d~~~lyv~~~-------~v~~~d~~t~~~ 256 (328)
T 3dsm_A 222 KL----GD-WPSEVQL-NGTRDTLYWINN-------DIWRMPVEADRV 256 (328)
T ss_dssp CT----TC-CCEEEEE-CTTSCEEEEESS-------SEEEEETTCSSC
T ss_pred CC----CC-CceeEEE-ecCCCEEEEEcc-------EEEEEECCCCce
Confidence 21 11 1122233 234677888765 789999988763
No 21
>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B*
Probab=97.79 E-value=0.012 Score=63.95 Aligned_cols=199 Identities=13% Similarity=0.176 Sum_probs=110.4
Q ss_pred EEECCEEEEEeccCCCCCCceEEEEEECCCCcEEEeeecCCCCCCceeeEEEEECCEEEEEccccCCCCCcCcEEEEEcC
Q 005043 153 ISWGKKVLLVGGKTDSGSDRVSVWTFDTETECWSVVEAKGDIPVARSGHTVVRASSVLILFGGEDGKRRKLNDLHMFDLK 232 (717)
Q Consensus 153 v~~~~~Iyv~GG~~~~~~~~~~v~~yD~~t~~W~~l~~~g~~P~~R~~hs~~~~~~~Lyv~GG~~~~~~~~~~v~~yD~~ 232 (717)
+.+++..++.|+.+. .+.+||+.+..-...- ......-..+..++..++.|+.++ .+.+||+.
T Consensus 245 ~~~~~~~l~~~~~dg------~i~iwd~~~~~~~~~~-----~~~~~~v~~~~~~~~~l~~~~~d~------~i~i~d~~ 307 (445)
T 2ovr_B 245 VQYDGRRVVSGAYDF------MVKVWDPETETCLHTL-----QGHTNRVYSLQFDGIHVVSGSLDT------SIRVWDVE 307 (445)
T ss_dssp EEECSSCEEEEETTS------CEEEEEGGGTEEEEEE-----CCCSSCEEEEEECSSEEEEEETTS------CEEEEETT
T ss_pred EEECCCEEEEEcCCC------EEEEEECCCCcEeEEe-----cCCCCceEEEEECCCEEEEEeCCC------eEEEEECC
Confidence 344777777777532 5888898776533221 111111222333777777777543 48899998
Q ss_pred CCceEeccCCCCCCCCCcccEEEEECCcEEEEEcCCCCCCCCCeEEEEECCCCcEEEeecCCCCCCCCcceEEEEECCEE
Q 005043 233 SLTWLPLHCTGTGPSPRSNHVAALYDDKNLLIFGGSSKSKTLNDLYSLDFETMIWTRIKIRGFHPSPRAGCCGVLCGTKW 312 (717)
Q Consensus 233 t~~W~~l~~~g~~P~~R~~~aa~~~~~~~lyV~GG~~~~~~~ndv~~yd~~t~~W~~v~~~g~~P~~R~~~sav~~~~~I 312 (717)
+.+-...- ........+...++. +++.|+.++ .+..||+.+..-...-.. .........++..++.+
T Consensus 308 ~~~~~~~~-----~~~~~~v~~~~~~~~-~l~~~~~dg-----~i~vwd~~~~~~~~~~~~--~~~~~~~v~~~~~~~~~ 374 (445)
T 2ovr_B 308 TGNCIHTL-----TGHQSLTSGMELKDN-ILVSGNADS-----TVKIWDIKTGQCLQTLQG--PNKHQSAVTCLQFNKNF 374 (445)
T ss_dssp TCCEEEEE-----CCCCSCEEEEEEETT-EEEEEETTS-----CEEEEETTTCCEEEEECS--TTSCSSCEEEEEECSSE
T ss_pred CCCEEEEE-----cCCcccEEEEEEeCC-EEEEEeCCC-----eEEEEECCCCcEEEEEcc--CCCCCCCEEEEEECCCE
Confidence 76533221 111112233444566 677777654 489999977654332211 01122233445557778
Q ss_pred EEEecCCCCCccCeEEEEECCCCcEEEeecCCCCCCCCCcceEEEEEEeCCCcEEEEEcCCCCCCCCeEEEEEccCC
Q 005043 313 YIAGGGSRKKRHAETLIFDILKGEWSVAITSPSSSVTSNKGFTLVLVQHKEKDFLVAFGGIKKEPSNQVEVLSIEKN 389 (717)
Q Consensus 313 yV~GG~~~~~~~~dv~~yD~~t~~W~~l~~~p~~~~~~r~g~s~v~v~~~~~~~I~v~GG~~~~~~n~v~vyd~~~~ 389 (717)
++.|+.++ .+.+||+.+.+.......... ......+..+....++.+++.|+.++.....+.+||...+
T Consensus 375 l~s~~~dg-----~v~iwd~~~~~~~~~~~~~~~---~~~~~~v~~~~~s~~~~~la~~~~dg~~~~~l~v~df~~~ 443 (445)
T 2ovr_B 375 VITSSDDG-----TVKLWDLKTGEFIRNLVTLES---GGSGGVVWRIRASNTKLVCAVGSRNGTEETKLLVLDFDVD 443 (445)
T ss_dssp EEEEETTS-----EEEEEETTTCCEEEEEEECTT---GGGTCEEEEEEECSSEEEEEEECSSSSSCCEEEEEECCCC
T ss_pred EEEEeCCC-----eEEEEECCCCceeeeeecccc---CCCCceEEEEEecCCEEEEEEcccCCCCccEEEEEECCCC
Confidence 88887653 489999988765442210101 1111222223333467788899988776668999997654
No 22
>3mbr_X Glutamine cyclotransferase; beta-propeller; 1.44A {Xanthomonas campestris}
Probab=97.79 E-value=0.007 Score=61.35 Aligned_cols=164 Identities=18% Similarity=0.058 Sum_probs=108.4
Q ss_pred ccceEEEEECCEEEEEeccCCCCCCceEEEEEECCCCcEEEeeecCCCCCCceeeEEEEECCEEEEEccccCCCCCcCcE
Q 005043 147 CRGHSLISWGKKVLLVGGKTDSGSDRVSVWTFDTETECWSVVEAKGDIPVARSGHTVVRASSVLILFGGEDGKRRKLNDL 226 (717)
Q Consensus 147 r~~hs~v~~~~~Iyv~GG~~~~~~~~~~v~~yD~~t~~W~~l~~~g~~P~~R~~hs~~~~~~~Lyv~GG~~~~~~~~~~v 226 (717)
.+-+++...++.+|+-.|..+ .+.+.++|+.+++-..-- .+|...++.+++..+++||+.... .+.+
T Consensus 21 ~ftqGL~~~~~~LyestG~~g----~S~v~~vD~~tgkv~~~~---~l~~~~fgeGi~~~~~~ly~ltw~------~~~v 87 (243)
T 3mbr_X 21 AFTEGLFYLRGHLYESTGETG----RSSVRKVDLETGRILQRA---EVPPPYFGAGIVAWRDRLIQLTWR------NHEG 87 (243)
T ss_dssp CCEEEEEEETTEEEEEECCTT----SCEEEEEETTTCCEEEEE---ECCTTCCEEEEEEETTEEEEEESS------SSEE
T ss_pred cccccEEEECCEEEEECCCCC----CceEEEEECCCCCEEEEE---eCCCCcceeEEEEeCCEEEEEEee------CCEE
Confidence 345677888999999988743 347999999998865543 267777888889999999998532 3679
Q ss_pred EEEEcCCCceEeccCCCCCCCCCcccEEEEECCcEEEEEcCCCCCCCCCeEEEEECCCCcEEEeecCCCCCCCCcc-eEE
Q 005043 227 HMFDLKSLTWLPLHCTGTGPSPRSNHVAALYDDKNLLIFGGSSKSKTLNDLYSLDFETMIWTRIKIRGFHPSPRAG-CCG 305 (717)
Q Consensus 227 ~~yD~~t~~W~~l~~~g~~P~~R~~~aa~~~~~~~lyV~GG~~~~~~~ndv~~yd~~t~~W~~v~~~g~~P~~R~~-~sa 305 (717)
++||+.+.+-.. ..|.+..+.+++. +++.||+.-| .+.++.+|+++.+-..--..+..+.+... -.+
T Consensus 88 ~v~D~~tl~~~~-----ti~~~~~Gwglt~-dg~~L~vSdg------s~~l~~iDp~t~~~~~~I~V~~~g~~~~~lNeL 155 (243)
T 3mbr_X 88 FVYDLATLTPRA-----RFRYPGEGWALTS-DDSHLYMSDG------TAVIRKLDPDTLQQVGSIKVTAGGRPLDNLNEL 155 (243)
T ss_dssp EEEETTTTEEEE-----EEECSSCCCEEEE-CSSCEEEECS------SSEEEEECTTTCCEEEEEECEETTEECCCEEEE
T ss_pred EEEECCcCcEEE-----EEeCCCCceEEee-CCCEEEEECC------CCeEEEEeCCCCeEEEEEEEccCCcccccceee
Confidence 999998876432 2222334555554 4555888765 24799999998765433222222223222 234
Q ss_pred EEECCEEEEEecCCCCCccCeEEEEECCCCcEEEe
Q 005043 306 VLCGTKWYIAGGGSRKKRHAETLIFDILKGEWSVA 340 (717)
Q Consensus 306 v~~~~~IyV~GG~~~~~~~~dv~~yD~~t~~W~~l 340 (717)
...+++||+---. .++|.+.|+.+.+-...
T Consensus 156 e~~~G~lyanvw~-----s~~I~vIDp~tG~V~~~ 185 (243)
T 3mbr_X 156 EWVNGELLANVWL-----TSRIARIDPASGKVVAW 185 (243)
T ss_dssp EEETTEEEEEETT-----TTEEEEECTTTCBEEEE
T ss_pred EEeCCEEEEEECC-----CCeEEEEECCCCCEEEE
Confidence 4568998854422 35799999999765443
No 23
>3mbr_X Glutamine cyclotransferase; beta-propeller; 1.44A {Xanthomonas campestris}
Probab=97.75 E-value=0.0068 Score=61.45 Aligned_cols=192 Identities=13% Similarity=0.129 Sum_probs=120.1
Q ss_pred CcceeEEEEECCEEEEEcccCCCCCcccEEEEEcCCCceEEccccccCCCCCCCCCCCcccceEEEEECCEEEEEeccCC
Q 005043 88 PRFNHAAAVIGNKMIVVGGESGNGLLDDVQVLNFDRFSWTAASSKLYLSPSSLPLKIPACRGHSLISWGKKVLLVGGKTD 167 (717)
Q Consensus 88 ~R~~haav~~~~~lyV~GG~~~~~~~~~v~~yd~~t~~W~~l~~~~~~~~~~~~~~~p~r~~hs~v~~~~~Iyv~GG~~~ 167 (717)
.-+-++..+.++.||+-.|..+. +.+.++|+.+++=....+. +...++.+++..+++||+....
T Consensus 20 ~~ftqGL~~~~~~LyestG~~g~---S~v~~vD~~tgkv~~~~~l-----------~~~~fgeGi~~~~~~ly~ltw~-- 83 (243)
T 3mbr_X 20 TAFTEGLFYLRGHLYESTGETGR---SSVRKVDLETGRILQRAEV-----------PPPYFGAGIVAWRDRLIQLTWR-- 83 (243)
T ss_dssp TCCEEEEEEETTEEEEEECCTTS---CEEEEEETTTCCEEEEEEC-----------CTTCCEEEEEEETTEEEEEESS--
T ss_pred ccccccEEEECCEEEEECCCCCC---ceEEEEECCCCCEEEEEeC-----------CCCcceeEEEEeCCEEEEEEee--
Confidence 34555777889999999997653 4689999999866554331 2234567888899999999654
Q ss_pred CCCCceEEEEEECCCCcEEEeeecCCCCCCceeeEEEEECCEEEEEccccCCCCCcCcEEEEEcCCCceEeccCCCCCCC
Q 005043 168 SGSDRVSVWTFDTETECWSVVEAKGDIPVARSGHTVVRASSVLILFGGEDGKRRKLNDLHMFDLKSLTWLPLHCTGTGPS 247 (717)
Q Consensus 168 ~~~~~~~v~~yD~~t~~W~~l~~~g~~P~~R~~hs~~~~~~~Lyv~GG~~~~~~~~~~v~~yD~~t~~W~~l~~~g~~P~ 247 (717)
.+.+++||+.|.+-..- ++.+..+.+++..++.||+.-| .+.++.+|+.+.+-..--..+..+.
T Consensus 84 ----~~~v~v~D~~tl~~~~t-----i~~~~~Gwglt~dg~~L~vSdg-------s~~l~~iDp~t~~~~~~I~V~~~g~ 147 (243)
T 3mbr_X 84 ----NHEGFVYDLATLTPRAR-----FRYPGEGWALTSDDSHLYMSDG-------TAVIRKLDPDTLQQVGSIKVTAGGR 147 (243)
T ss_dssp ----SSEEEEEETTTTEEEEE-----EECSSCCCEEEECSSCEEEECS-------SSEEEEECTTTCCEEEEEECEETTE
T ss_pred ----CCEEEEEECCcCcEEEE-----EeCCCCceEEeeCCCEEEEECC-------CCeEEEEeCCCCeEEEEEEEccCCc
Confidence 24799999998764432 2223467788877888999743 3579999999876543211112222
Q ss_pred CCcc-cEEEEECCcEEEEEcCCCCCCCCCeEEEEECCCCcEEEeecCCC-CC--------CCCcceEEEEE--CCEEEEE
Q 005043 248 PRSN-HVAALYDDKNLLIFGGSSKSKTLNDLYSLDFETMIWTRIKIRGF-HP--------SPRAGCCGVLC--GTKWYIA 315 (717)
Q Consensus 248 ~R~~-~aa~~~~~~~lyV~GG~~~~~~~ndv~~yd~~t~~W~~v~~~g~-~P--------~~R~~~sav~~--~~~IyV~ 315 (717)
+... --+...+++ ||+--- ..++|.+.|+.++.-...-..+. .| ..-.--+.+.. ++++||.
T Consensus 148 ~~~~lNeLe~~~G~-lyanvw-----~s~~I~vIDp~tG~V~~~idl~~l~~~~~~~~~~~~~vlNGIA~d~~~~~lfVT 221 (243)
T 3mbr_X 148 PLDNLNELEWVNGE-LLANVW-----LTSRIARIDPASGKVVAWIDLQALVPDADALTDSTNDVLNGIAFDAEHDRLFVT 221 (243)
T ss_dssp ECCCEEEEEEETTE-EEEEET-----TTTEEEEECTTTCBEEEEEECGGGSTTTTSCCCTTSSCEEEEEEETTTTEEEEE
T ss_pred ccccceeeEEeCCE-EEEEEC-----CCCeEEEEECCCCCEEEEEECCcCccccccccCCcCCceEEEEEcCCCCEEEEE
Confidence 2111 123344565 775332 24689999999987544333221 11 11122344444 5789998
Q ss_pred ec
Q 005043 316 GG 317 (717)
Q Consensus 316 GG 317 (717)
|-
T Consensus 222 GK 223 (243)
T 3mbr_X 222 GK 223 (243)
T ss_dssp ET
T ss_pred CC
Confidence 85
No 24
>3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A 3q54_A
Probab=97.73 E-value=0.043 Score=58.08 Aligned_cols=233 Identities=15% Similarity=0.171 Sum_probs=128.6
Q ss_pred EEEEECCEEEEEcccCCCCCcccEEEEEcCCC--ceEEccccccCCCCCCCCCCCcccceEEEEECCEEEEEeccCCCCC
Q 005043 93 AAAVIGNKMIVVGGESGNGLLDDVQVLNFDRF--SWTAASSKLYLSPSSLPLKIPACRGHSLISWGKKVLLVGGKTDSGS 170 (717)
Q Consensus 93 aav~~~~~lyV~GG~~~~~~~~~v~~yd~~t~--~W~~l~~~~~~~~~~~~~~~p~r~~hs~v~~~~~Iyv~GG~~~~~~ 170 (717)
+.++.++.||+.... ..++.||+.+. .|+.-....... ..........+.+..++.||+....
T Consensus 48 ~p~v~~~~v~~~~~~------g~v~a~d~~tG~~~W~~~~~~~~~~----~~~~~~~~~~~~~~~~~~v~v~~~~----- 112 (376)
T 3q7m_A 48 HPALADNVVYAADRA------GLVKALNADDGKEIWSVSLAEKDGW----FSKEPALLSGGVTVSGGHVYIGSEK----- 112 (376)
T ss_dssp CCEEETTEEEEECTT------SEEEEEETTTCCEEEEEECCC---C----CSCCCCCEEEEEEEETTEEEEEETT-----
T ss_pred ccEEECCEEEEEcCC------CeEEEEEccCCceeeeecCcccccc----ccccCcccccCceEeCCEEEEEcCC-----
Confidence 456678999988642 26899999775 687654311000 0000122234456678889886432
Q ss_pred CceEEEEEECCCCc--EEEeeecCCCCCCceeeEEEEECCEEEEEccccCCCCCcCcEEEEEcCCCc--eEeccCCCCCC
Q 005043 171 DRVSVWTFDTETEC--WSVVEAKGDIPVARSGHTVVRASSVLILFGGEDGKRRKLNDLHMFDLKSLT--WLPLHCTGTGP 246 (717)
Q Consensus 171 ~~~~v~~yD~~t~~--W~~l~~~g~~P~~R~~hs~~~~~~~Lyv~GG~~~~~~~~~~v~~yD~~t~~--W~~l~~~g~~P 246 (717)
..++.||..+++ |+.-.. .. .....+..++.+|+..+ -..++.||+.+++ |+.-... ...
T Consensus 113 --g~l~a~d~~tG~~~W~~~~~-----~~-~~~~p~~~~~~v~v~~~-------~g~l~~~d~~tG~~~W~~~~~~-~~~ 176 (376)
T 3q7m_A 113 --AQVYALNTSDGTVAWQTKVA-----GE-ALSRPVVSDGLVLIHTS-------NGQLQALNEADGAVKWTVNLDM-PSL 176 (376)
T ss_dssp --SEEEEEETTTCCEEEEEECS-----SC-CCSCCEEETTEEEEECT-------TSEEEEEETTTCCEEEEEECCC----
T ss_pred --CEEEEEECCCCCEEEEEeCC-----Cc-eEcCCEEECCEEEEEcC-------CCeEEEEECCCCcEEEEEeCCC-Cce
Confidence 369999998765 865431 11 12223455788887532 2469999998775 8764311 111
Q ss_pred CCCcccEEEEECCcEEEEEcCCCCCCCCCeEEEEECCCCc--EEEeecCCCCCCCC--------cceEEEEECCEEEEEe
Q 005043 247 SPRSNHVAALYDDKNLLIFGGSSKSKTLNDLYSLDFETMI--WTRIKIRGFHPSPR--------AGCCGVLCGTKWYIAG 316 (717)
Q Consensus 247 ~~R~~~aa~~~~~~~lyV~GG~~~~~~~ndv~~yd~~t~~--W~~v~~~g~~P~~R--------~~~sav~~~~~IyV~G 316 (717)
..+...+.+..++. +|+ |..+ ..++.||+.++. |+.-... |... .....+..++.+|+.+
T Consensus 177 ~~~~~~~~~~~~~~-v~~-g~~~-----g~l~~~d~~tG~~~w~~~~~~---~~~~~~~~~~~~~~~~p~~~~~~v~~~~ 246 (376)
T 3q7m_A 177 SLRGESAPTTAFGA-AVV-GGDN-----GRVSAVLMEQGQMIWQQRISQ---ATGSTEIDRLSDVDTTPVVVNGVVFALA 246 (376)
T ss_dssp --CCCCCCEEETTE-EEE-CCTT-----TEEEEEETTTCCEEEEEECCC--------------CCCCCCEEETTEEEEEC
T ss_pred eecCCCCcEEECCE-EEE-EcCC-----CEEEEEECCCCcEEEEEeccc---CCCCcccccccccCCCcEEECCEEEEEe
Confidence 11112233344443 554 4332 359999997654 6654321 1111 2233355688888765
Q ss_pred cCCCCCccCeEEEEECCCC--cEEEeecCCCCCCCCCcceEEEEEEeCCCcEEEEEcCCCCCCCCeEEEEEccCCc
Q 005043 317 GGSRKKRHAETLIFDILKG--EWSVAITSPSSSVTSNKGFTLVLVQHKEKDFLVAFGGIKKEPSNQVEVLSIEKNE 390 (717)
Q Consensus 317 G~~~~~~~~dv~~yD~~t~--~W~~l~~~p~~~~~~r~g~s~v~v~~~~~~~I~v~GG~~~~~~n~v~vyd~~~~e 390 (717)
. . ..+++||+.+. .|+.-. . ......+. ++.||+.... ..+.+||+.+.+
T Consensus 247 ~-~-----g~l~~~d~~tG~~~w~~~~----~------~~~~~~~~---~~~l~~~~~~-----g~l~~~d~~tG~ 298 (376)
T 3q7m_A 247 Y-N-----GNLTALDLRSGQIMWKREL----G------SVNDFIVD---GNRIYLVDQN-----DRVMALTIDGGV 298 (376)
T ss_dssp T-T-----SCEEEEETTTCCEEEEECC----C------CEEEEEEE---TTEEEEEETT-----CCEEEEETTTCC
T ss_pred c-C-----cEEEEEECCCCcEEeeccC----C------CCCCceEE---CCEEEEEcCC-----CeEEEEECCCCc
Confidence 2 2 35899999876 466521 1 11222332 6777776532 268999988776
No 25
>1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3
Probab=97.73 E-value=0.0037 Score=66.27 Aligned_cols=227 Identities=17% Similarity=0.092 Sum_probs=124.3
Q ss_pred CEEEEEcccCCCCCcccEEEEEcCCCceEEccccccCCCCCCCCCCCcccceEEEEE--CCEEEEEeccCCCCCCceEEE
Q 005043 99 NKMIVVGGESGNGLLDDVQVLNFDRFSWTAASSKLYLSPSSLPLKIPACRGHSLISW--GKKVLLVGGKTDSGSDRVSVW 176 (717)
Q Consensus 99 ~~lyV~GG~~~~~~~~~v~~yd~~t~~W~~l~~~~~~~~~~~~~~~p~r~~hs~v~~--~~~Iyv~GG~~~~~~~~~~v~ 176 (717)
+.+|+.|+.++ .+.+||+.+++-...-.. ... -.+++.. +..||+.|+.+ ..+.
T Consensus 2 ~~l~vs~~~d~-----~v~v~d~~~~~~~~~~~~------------~~~-~~~~~~s~dg~~l~~~~~~d------~~i~ 57 (391)
T 1l0q_A 2 TFAYIANSESD-----NISVIDVTSNKVTATIPV------------GSN-PMGAVISPDGTKVYVANAHS------NDVS 57 (391)
T ss_dssp EEEEEEETTTT-----EEEEEETTTTEEEEEEEC------------SSS-EEEEEECTTSSEEEEEEGGG------TEEE
T ss_pred CEEEEEcCCCC-----EEEEEECCCCeEEEEeec------------CCC-cceEEECCCCCEEEEECCCC------CeEE
Confidence 35777776543 589999988754433221 111 1233332 34677777653 2699
Q ss_pred EEECCCCcEEEeeecCCCCCCceeeEEEEE--CCEEEEEccccCCCCCcCcEEEEEcCCCceEeccCCCCCCCCCcccEE
Q 005043 177 TFDTETECWSVVEAKGDIPVARSGHTVVRA--SSVLILFGGEDGKRRKLNDLHMFDLKSLTWLPLHCTGTGPSPRSNHVA 254 (717)
Q Consensus 177 ~yD~~t~~W~~l~~~g~~P~~R~~hs~~~~--~~~Lyv~GG~~~~~~~~~~v~~yD~~t~~W~~l~~~g~~P~~R~~~aa 254 (717)
+||+.+++....-. .+. .-.+++.. +..||+.|..+ +.+++||+.+++....-. .......+
T Consensus 58 v~d~~~~~~~~~~~---~~~--~v~~~~~spdg~~l~~~~~~~------~~v~v~d~~~~~~~~~~~-----~~~~~~~~ 121 (391)
T 1l0q_A 58 IIDTATNNVIATVP---AGS--SPQGVAVSPDGKQVYVTNMAS------STLSVIDTTSNTVAGTVK-----TGKSPLGL 121 (391)
T ss_dssp EEETTTTEEEEEEE---CSS--SEEEEEECTTSSEEEEEETTT------TEEEEEETTTTEEEEEEE-----CSSSEEEE
T ss_pred EEECCCCeEEEEEE---CCC--CccceEECCCCCEEEEEECCC------CEEEEEECCCCeEEEEEe-----CCCCcceE
Confidence 99998887654432 122 22333333 34566664322 459999999886544321 11122333
Q ss_pred EEE-CCcEEEEEcCCCCCCCCCeEEEEECCCCcEEEeecCCCCCCCCcceEEEEE--CCEEEEEecCCCCCccCeEEEEE
Q 005043 255 ALY-DDKNLLIFGGSSKSKTLNDLYSLDFETMIWTRIKIRGFHPSPRAGCCGVLC--GTKWYIAGGGSRKKRHAETLIFD 331 (717)
Q Consensus 255 ~~~-~~~~lyV~GG~~~~~~~ndv~~yd~~t~~W~~v~~~g~~P~~R~~~sav~~--~~~IyV~GG~~~~~~~~dv~~yD 331 (717)
+.. +++.+|+.++.+ +.+++||+.+.+.......+ .....++.. ++.+|+.++.+ ..+++||
T Consensus 122 ~~s~dg~~l~~~~~~~-----~~v~~~d~~~~~~~~~~~~~-----~~~~~~~~~~dg~~l~~~~~~~-----~~v~~~d 186 (391)
T 1l0q_A 122 ALSPDGKKLYVTNNGD-----KTVSVINTVTKAVINTVSVG-----RSPKGIAVTPDGTKVYVANFDS-----MSISVID 186 (391)
T ss_dssp EECTTSSEEEEEETTT-----TEEEEEETTTTEEEEEEECC-----SSEEEEEECTTSSEEEEEETTT-----TEEEEEE
T ss_pred EECCCCCEEEEEeCCC-----CEEEEEECCCCcEEEEEecC-----CCcceEEECCCCCEEEEEeCCC-----CEEEEEE
Confidence 443 345576776543 36999999888766554321 111233332 44677776644 3599999
Q ss_pred CCCCcEEEeecCCCCCCCCCcceEEEEEEeCCCcEEEEEcCCCCCCCCeEEEEEccCCc
Q 005043 332 ILKGEWSVAITSPSSSVTSNKGFTLVLVQHKEKDFLVAFGGIKKEPSNQVEVLSIEKNE 390 (717)
Q Consensus 332 ~~t~~W~~l~~~p~~~~~~r~g~s~v~v~~~~~~~I~v~GG~~~~~~n~v~vyd~~~~e 390 (717)
+.+......... ......+.+. +++..|++.+.. .....+.+||+.+.+
T Consensus 187 ~~~~~~~~~~~~-------~~~~~~~~~~-~~g~~l~~~~~~--~~~~~v~~~d~~~~~ 235 (391)
T 1l0q_A 187 TVTNSVIDTVKV-------EAAPSGIAVN-PEGTKAYVTNVD--KYFNTVSMIDTGTNK 235 (391)
T ss_dssp TTTTEEEEEEEC-------SSEEEEEEEC-TTSSEEEEEEEC--SSCCEEEEEETTTTE
T ss_pred CCCCeEEEEEec-------CCCccceEEC-CCCCEEEEEecC--cCCCcEEEEECCCCe
Confidence 988765544321 1112223332 334455555421 123478999987764
No 26
>1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3
Probab=97.68 E-value=0.0068 Score=64.15 Aligned_cols=228 Identities=14% Similarity=0.105 Sum_probs=123.0
Q ss_pred CCEEEEEcccCCCCCcccEEEEEcCCCceEEccccccCCCCCCCCCCCcccceEEEEE--CCEEEEEeccCCCCCCceEE
Q 005043 98 GNKMIVVGGESGNGLLDDVQVLNFDRFSWTAASSKLYLSPSSLPLKIPACRGHSLISW--GKKVLLVGGKTDSGSDRVSV 175 (717)
Q Consensus 98 ~~~lyV~GG~~~~~~~~~v~~yd~~t~~W~~l~~~~~~~~~~~~~~~p~r~~hs~v~~--~~~Iyv~GG~~~~~~~~~~v 175 (717)
+..||+.|+.+ ..+.+||+.+++....-.. .. .-.+++.. ++.||+.|... ..+
T Consensus 43 g~~l~~~~~~d-----~~i~v~d~~~~~~~~~~~~------------~~-~v~~~~~spdg~~l~~~~~~~------~~v 98 (391)
T 1l0q_A 43 GTKVYVANAHS-----NDVSIIDTATNNVIATVPA------------GS-SPQGVAVSPDGKQVYVTNMAS------STL 98 (391)
T ss_dssp SSEEEEEEGGG-----TEEEEEETTTTEEEEEEEC------------SS-SEEEEEECTTSSEEEEEETTT------TEE
T ss_pred CCEEEEECCCC-----CeEEEEECCCCeEEEEEEC------------CC-CccceEECCCCCEEEEEECCC------CEE
Confidence 34577777644 3689999988765443321 11 12233333 34566665432 369
Q ss_pred EEEECCCCcEEEeeecCCCCCCceeeEEEEE--CCEEEEEccccCCCCCcCcEEEEEcCCCceEeccCCCCCCCCCcccE
Q 005043 176 WTFDTETECWSVVEAKGDIPVARSGHTVVRA--SSVLILFGGEDGKRRKLNDLHMFDLKSLTWLPLHCTGTGPSPRSNHV 253 (717)
Q Consensus 176 ~~yD~~t~~W~~l~~~g~~P~~R~~hs~~~~--~~~Lyv~GG~~~~~~~~~~v~~yD~~t~~W~~l~~~g~~P~~R~~~a 253 (717)
.+||+.+++....... . ....+++.. +..||+.++.+ +.+++||+.+.+....-..+. .-..
T Consensus 99 ~v~d~~~~~~~~~~~~---~--~~~~~~~~s~dg~~l~~~~~~~------~~v~~~d~~~~~~~~~~~~~~-----~~~~ 162 (391)
T 1l0q_A 99 SVIDTTSNTVAGTVKT---G--KSPLGLALSPDGKKLYVTNNGD------KTVSVINTVTKAVINTVSVGR-----SPKG 162 (391)
T ss_dssp EEEETTTTEEEEEEEC---S--SSEEEEEECTTSSEEEEEETTT------TEEEEEETTTTEEEEEEECCS-----SEEE
T ss_pred EEEECCCCeEEEEEeC---C--CCcceEEECCCCCEEEEEeCCC------CEEEEEECCCCcEEEEEecCC-----Ccce
Confidence 9999998876544321 1 122344443 33677776432 469999998877654421111 1123
Q ss_pred EEEE-CCcEEEEEcCCCCCCCCCeEEEEECCCCcEEEeecCCCCCCCCcceEEEEE-CC-EEEEEecCCCCCccCeEEEE
Q 005043 254 AALY-DDKNLLIFGGSSKSKTLNDLYSLDFETMIWTRIKIRGFHPSPRAGCCGVLC-GT-KWYIAGGGSRKKRHAETLIF 330 (717)
Q Consensus 254 a~~~-~~~~lyV~GG~~~~~~~ndv~~yd~~t~~W~~v~~~g~~P~~R~~~sav~~-~~-~IyV~GG~~~~~~~~dv~~y 330 (717)
++.. +++.+|+.++.+ +.+.+||+.++........ .....+++.. ++ .+|+.+... ....+.+|
T Consensus 163 ~~~~~dg~~l~~~~~~~-----~~v~~~d~~~~~~~~~~~~-----~~~~~~~~~~~~g~~l~~~~~~~---~~~~v~~~ 229 (391)
T 1l0q_A 163 IAVTPDGTKVYVANFDS-----MSISVIDTVTNSVIDTVKV-----EAAPSGIAVNPEGTKAYVTNVDK---YFNTVSMI 229 (391)
T ss_dssp EEECTTSSEEEEEETTT-----TEEEEEETTTTEEEEEEEC-----SSEEEEEEECTTSSEEEEEEECS---SCCEEEEE
T ss_pred EEECCCCCEEEEEeCCC-----CEEEEEECCCCeEEEEEec-----CCCccceEECCCCCEEEEEecCc---CCCcEEEE
Confidence 3333 344566766543 4599999988765544322 1111222222 34 455554311 12469999
Q ss_pred ECCCCcEEEeecCCCCCCCCCcceEEEEEEeCCCcEEEEEcCCCCCCCCeEEEEEccCCc
Q 005043 331 DILKGEWSVAITSPSSSVTSNKGFTLVLVQHKEKDFLVAFGGIKKEPSNQVEVLSIEKNE 390 (717)
Q Consensus 331 D~~t~~W~~l~~~p~~~~~~r~g~s~v~v~~~~~~~I~v~GG~~~~~~n~v~vyd~~~~e 390 (717)
|+.+..-.... +.. .....+.+. +++..||+.++.+ +.+.+||+.+.+
T Consensus 230 d~~~~~~~~~~--~~~-----~~~~~~~~s-~dg~~l~~s~~~d----~~v~v~d~~~~~ 277 (391)
T 1l0q_A 230 DTGTNKITARI--PVG-----PDPAGIAVT-PDGKKVYVALSFX----NTVSVIDTATNT 277 (391)
T ss_dssp ETTTTEEEEEE--ECC-----SSEEEEEEC-TTSSEEEEEETTT----TEEEEEETTTTE
T ss_pred ECCCCeEEEEE--ecC-----CCccEEEEc-cCCCEEEEEcCCC----CEEEEEECCCCc
Confidence 99887544332 111 112223332 3455677776543 378999998765
No 27
>3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans}
Probab=97.58 E-value=0.0034 Score=67.52 Aligned_cols=227 Identities=12% Similarity=0.008 Sum_probs=117.9
Q ss_pred cEEEEEcCCCceEEccccccCCCCCCCCCCCcccceEEEEE-CCEEEEEeccCCCCCCceEEEEEECCCCcEEEeeecCC
Q 005043 115 DVQVLNFDRFSWTAASSKLYLSPSSLPLKIPACRGHSLISW-GKKVLLVGGKTDSGSDRVSVWTFDTETECWSVVEAKGD 193 (717)
Q Consensus 115 ~v~~yd~~t~~W~~l~~~~~~~~~~~~~~~p~r~~hs~v~~-~~~Iyv~GG~~~~~~~~~~v~~yD~~t~~W~~l~~~g~ 193 (717)
.+|.+|+.+..+..+.... .+.. ..+++.. ++.+|+.|+.. ..+.+||+.+++.......+.
T Consensus 102 ~l~~~d~~~~~~~~~~~~~----------~~~~-~~~~~~s~~~~~~~~~~~~------~~i~~~d~~~g~~~~~~~~~~ 164 (433)
T 3bws_A 102 KLIALDKEGITHRFISRFK----------TGFQ-PKSVRFIDNTRLAIPLLED------EGMDVLDINSGQTVRLSPPEK 164 (433)
T ss_dssp CEEECCBTTCSEEEEEEEE----------CSSC-BCCCEESSSSEEEEEBTTS------SSEEEEETTTCCEEEECCCHH
T ss_pred EEEEECCCCCcceEEEEEc----------CCCC-ceEEEEeCCCeEEEEeCCC------CeEEEEECCCCeEeeecCccc
Confidence 6888888777666554321 1111 1122222 67788877643 248999999887665331100
Q ss_pred CCCCc-eeeEEEE-ECCEEEEEccccCCCCCcCcEEEEEcCCCceEeccCCCCCCCCCcccEEEEE-CCcEEEEEcCCCC
Q 005043 194 IPVAR-SGHTVVR-ASSVLILFGGEDGKRRKLNDLHMFDLKSLTWLPLHCTGTGPSPRSNHVAALY-DDKNLLIFGGSSK 270 (717)
Q Consensus 194 ~P~~R-~~hs~~~-~~~~Lyv~GG~~~~~~~~~~v~~yD~~t~~W~~l~~~g~~P~~R~~~aa~~~-~~~~lyV~GG~~~ 270 (717)
..... .-.+++. -++.+|+.|+.+ ..+.+||+.+.+....- . .....-.+++.. +++.+|+.++.+
T Consensus 165 ~~~~~~~v~~~~~~~~~~~~~s~~~d------~~v~~~d~~~~~~~~~~---~-~~~~~~~~~~~~~~~~~l~~~~~~~- 233 (433)
T 3bws_A 165 YKKKLGFVETISIPEHNELWVSQMQA------NAVHVFDLKTLAYKATV---D-LTGKWSKILLYDPIRDLVYCSNWIS- 233 (433)
T ss_dssp HHTTCCEEEEEEEGGGTEEEEEEGGG------TEEEEEETTTCCEEEEE---E-CSSSSEEEEEEETTTTEEEEEETTT-
T ss_pred ccccCCceeEEEEcCCCEEEEEECCC------CEEEEEECCCceEEEEE---c-CCCCCeeEEEEcCCCCEEEEEecCC-
Confidence 11111 1122222 257888887643 45889999876543321 1 111112233333 345566666543
Q ss_pred CCCCCeEEEEECCCCcEEEeecCCCCCCCCcceEEEEE-CCEEEEEecCCCCC---ccCeEEEEECCCCcEEEeecCCCC
Q 005043 271 SKTLNDLYSLDFETMIWTRIKIRGFHPSPRAGCCGVLC-GTKWYIAGGGSRKK---RHAETLIFDILKGEWSVAITSPSS 346 (717)
Q Consensus 271 ~~~~ndv~~yd~~t~~W~~v~~~g~~P~~R~~~sav~~-~~~IyV~GG~~~~~---~~~dv~~yD~~t~~W~~l~~~p~~ 346 (717)
..+.+||+.+........ ......+++.. +++.+++++..... ....+++||+.+.+.......+
T Consensus 234 ----~~i~~~d~~~~~~~~~~~-----~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~dg~i~~~d~~~~~~~~~~~~~-- 302 (433)
T 3bws_A 234 ----EDISVIDRKTKLEIRKTD-----KIGLPRGLLLSKDGKELYIAQFSASNQESGGGRLGIYSMDKEKLIDTIGPP-- 302 (433)
T ss_dssp ----TEEEEEETTTTEEEEECC-----CCSEEEEEEECTTSSEEEEEEEESCTTCSCCEEEEEEETTTTEEEEEEEEE--
T ss_pred ----CcEEEEECCCCcEEEEec-----CCCCceEEEEcCCCCEEEEEECCCCccccCCCeEEEEECCCCcEEeeccCC--
Confidence 369999998876644322 11122233332 45444444432211 1246899999887544432111
Q ss_pred CCCCCcceEEEEEEeCCCcEEEEEcCCCCCCCCeEEEEEccCCc
Q 005043 347 SVTSNKGFTLVLVQHKEKDFLVAFGGIKKEPSNQVEVLSIEKNE 390 (717)
Q Consensus 347 ~~~~r~g~s~v~v~~~~~~~I~v~GG~~~~~~n~v~vyd~~~~e 390 (717)
.....+.+ .+++..+|+.++.+ +.+.+||+.+.+
T Consensus 303 -----~~~~~~~~-~~~g~~l~~~~~~~----~~v~v~d~~~~~ 336 (433)
T 3bws_A 303 -----GNKRHIVS-GNTENKIYVSDMCC----SKIEVYDLKEKK 336 (433)
T ss_dssp -----ECEEEEEE-CSSTTEEEEEETTT----TEEEEEETTTTE
T ss_pred -----CCcceEEE-CCCCCEEEEEecCC----CEEEEEECCCCc
Confidence 11222333 23445677776543 378999988654
No 28
>3nol_A Glutamine cyclotransferase; beta-propeller, glutaminyl cyclase, pyrogl transferase; 1.70A {Zymomonas mobilis} PDB: 3nom_A
Probab=97.55 E-value=0.0073 Score=61.88 Aligned_cols=189 Identities=13% Similarity=0.052 Sum_probs=116.0
Q ss_pred ceeEEEEECCEEEEEcccCCCCCcccEEEEEcCCCceEEccccccCCCCCCCCCCCcccceEEEEECCEEEEEeccCCCC
Q 005043 90 FNHAAAVIGNKMIVVGGESGNGLLDDVQVLNFDRFSWTAASSKLYLSPSSLPLKIPACRGHSLISWGKKVLLVGGKTDSG 169 (717)
Q Consensus 90 ~~haav~~~~~lyV~GG~~~~~~~~~v~~yd~~t~~W~~l~~~~~~~~~~~~~~~p~r~~hs~v~~~~~Iyv~GG~~~~~ 169 (717)
+..+..+.++.||+-.|..+. +.+.++|+.+++=....+. .+..++.+++..+++||+.....
T Consensus 44 ftqGL~~~~~~LyestG~~g~---S~v~~vD~~Tgkv~~~~~l-----------~~~~FgeGit~~g~~ly~ltw~~--- 106 (262)
T 3nol_A 44 FTEGFFYRNGYFYESTGLNGR---SSIRKVDIESGKTLQQIEL-----------GKRYFGEGISDWKDKIVGLTWKN--- 106 (262)
T ss_dssp EEEEEEEETTEEEEEEEETTE---EEEEEECTTTCCEEEEEEC-----------CTTCCEEEEEEETTEEEEEESSS---
T ss_pred ccceEEEECCEEEEECCCCCC---ceEEEEECCCCcEEEEEec-----------CCccceeEEEEeCCEEEEEEeeC---
Confidence 335556668999999997653 3688999999865444331 22345677888899999996542
Q ss_pred CCceEEEEEECCCCcEEEeeecCCCCCCceeeEEEEECCEEEEEccccCCCCCcCcEEEEEcCCCceEe-ccCCCCCCCC
Q 005043 170 SDRVSVWTFDTETECWSVVEAKGDIPVARSGHTVVRASSVLILFGGEDGKRRKLNDLHMFDLKSLTWLP-LHCTGTGPSP 248 (717)
Q Consensus 170 ~~~~~v~~yD~~t~~W~~l~~~g~~P~~R~~hs~~~~~~~Lyv~GG~~~~~~~~~~v~~yD~~t~~W~~-l~~~g~~P~~ 248 (717)
+.+++||+.+.+-..- ++.+-.+.+++..++.||+.-| .+.++.+|+.+.+-.. +.. +..+.+
T Consensus 107 ---~~v~v~D~~t~~~~~t-----i~~~~eG~glt~dg~~L~~SdG-------s~~i~~iDp~T~~v~~~I~V-~~~g~~ 170 (262)
T 3nol_A 107 ---GLGFVWNIRNLRQVRS-----FNYDGEGWGLTHNDQYLIMSDG-------TPVLRFLDPESLTPVRTITV-TAHGEE 170 (262)
T ss_dssp ---SEEEEEETTTCCEEEE-----EECSSCCCCEEECSSCEEECCS-------SSEEEEECTTTCSEEEEEEC-EETTEE
T ss_pred ---CEEEEEECccCcEEEE-----EECCCCceEEecCCCEEEEECC-------CCeEEEEcCCCCeEEEEEEe-ccCCcc
Confidence 4799999998764432 1222366677777778888743 3579999999876443 221 111111
Q ss_pred Ccc-cEEEEECCcEEEEEcCCCCCCCCCeEEEEECCCCcEEEeecCCCC--------CCCCcceEEEEE--CCEEEEEec
Q 005043 249 RSN-HVAALYDDKNLLIFGGSSKSKTLNDLYSLDFETMIWTRIKIRGFH--------PSPRAGCCGVLC--GTKWYIAGG 317 (717)
Q Consensus 249 R~~-~aa~~~~~~~lyV~GG~~~~~~~ndv~~yd~~t~~W~~v~~~g~~--------P~~R~~~sav~~--~~~IyV~GG 317 (717)
... --+...+++ ||+--- ..+.|.+.|+.+++-...-..+.+ +..-.-.+.+.. ++++||.|-
T Consensus 171 ~~~lNELe~~~G~-lyan~w-----~~~~I~vIDp~tG~V~~~Id~~~L~~~~~~~~~~~~vlNGIA~dp~~~~lfVTGK 244 (262)
T 3nol_A 171 LPELNELEWVDGE-IFANVW-----QTNKIVRIDPETGKVTGIIDLNGILAEAGPLPSPIDVLNGIAWDKEHHRLFVTGK 244 (262)
T ss_dssp CCCEEEEEEETTE-EEEEET-----TSSEEEEECTTTCBEEEEEECTTGGGGSCSCCSSCCCEEEEEEETTTTEEEEEET
T ss_pred ccccceeEEECCE-EEEEEc-----cCCeEEEEECCCCcEEEEEECCcCccccccccCcCCceEEEEEcCCCCEEEEECC
Confidence 111 023344665 776321 246899999999885544332211 111122344554 578998885
No 29
>3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A 3q54_A
Probab=97.53 E-value=0.09 Score=55.56 Aligned_cols=227 Identities=13% Similarity=0.160 Sum_probs=124.7
Q ss_pred ceeEEEEECCEEEEEcccCCCCCcccEEEEEcCCC--ceEEccccccCCCCCCCCCCCcccceEEEEECCEEEEEeccCC
Q 005043 90 FNHAAAVIGNKMIVVGGESGNGLLDDVQVLNFDRF--SWTAASSKLYLSPSSLPLKIPACRGHSLISWGKKVLLVGGKTD 167 (717)
Q Consensus 90 ~~haav~~~~~lyV~GG~~~~~~~~~v~~yd~~t~--~W~~l~~~~~~~~~~~~~~~p~r~~hs~v~~~~~Iyv~GG~~~ 167 (717)
...+.+..++.||+.... ..++.||+.+. .|+.-... . ...+.+..++.+|+..+.
T Consensus 95 ~~~~~~~~~~~v~v~~~~------g~l~a~d~~tG~~~W~~~~~~------------~--~~~~p~~~~~~v~v~~~~-- 152 (376)
T 3q7m_A 95 LSGGVTVSGGHVYIGSEK------AQVYALNTSDGTVAWQTKVAG------------E--ALSRPVVSDGLVLIHTSN-- 152 (376)
T ss_dssp EEEEEEEETTEEEEEETT------SEEEEEETTTCCEEEEEECSS------------C--CCSCCEEETTEEEEECTT--
T ss_pred cccCceEeCCEEEEEcCC------CEEEEEECCCCCEEEEEeCCC------------c--eEcCCEEECCEEEEEcCC--
Confidence 334455678888886432 36899999876 58664331 0 112234557888875431
Q ss_pred CCCCceEEEEEECCCCc--EEEeeecCCCCCCceeeEEEEECCEEEEEccccCCCCCcCcEEEEEcCCCc--eEeccCCC
Q 005043 168 SGSDRVSVWTFDTETEC--WSVVEAKGDIPVARSGHTVVRASSVLILFGGEDGKRRKLNDLHMFDLKSLT--WLPLHCTG 243 (717)
Q Consensus 168 ~~~~~~~v~~yD~~t~~--W~~l~~~g~~P~~R~~hs~~~~~~~Lyv~GG~~~~~~~~~~v~~yD~~t~~--W~~l~~~g 243 (717)
..++.||+.+++ |+.-.... ....+...+.+..++.+|+- .. -..++.||+.+.+ |+.-.
T Consensus 153 -----g~l~~~d~~tG~~~W~~~~~~~-~~~~~~~~~~~~~~~~v~~g-~~------~g~l~~~d~~tG~~~w~~~~--- 216 (376)
T 3q7m_A 153 -----GQLQALNEADGAVKWTVNLDMP-SLSLRGESAPTTAFGAAVVG-GD------NGRVSAVLMEQGQMIWQQRI--- 216 (376)
T ss_dssp -----SEEEEEETTTCCEEEEEECCC------CCCCCCEEETTEEEEC-CT------TTEEEEEETTTCCEEEEEEC---
T ss_pred -----CeEEEEECCCCcEEEEEeCCCC-ceeecCCCCcEEECCEEEEE-cC------CCEEEEEECCCCcEEEEEec---
Confidence 269999998875 87654211 11112223344557777763 21 2458999997664 77542
Q ss_pred CCCCCC--------cccEEEEECCcEEEEEcCCCCCCCCCeEEEEECCCCc--EEEeecCCCCCCCCcceEEEEECCEEE
Q 005043 244 TGPSPR--------SNHVAALYDDKNLLIFGGSSKSKTLNDLYSLDFETMI--WTRIKIRGFHPSPRAGCCGVLCGTKWY 313 (717)
Q Consensus 244 ~~P~~R--------~~~aa~~~~~~~lyV~GG~~~~~~~ndv~~yd~~t~~--W~~v~~~g~~P~~R~~~sav~~~~~Iy 313 (717)
..|... .....+..++. +|+.+ .+ ..++.||+.++. |+.-. + ...+.+..++.||
T Consensus 217 ~~~~~~~~~~~~~~~~~~p~~~~~~-v~~~~-~~-----g~l~~~d~~tG~~~w~~~~-----~---~~~~~~~~~~~l~ 281 (376)
T 3q7m_A 217 SQATGSTEIDRLSDVDTTPVVVNGV-VFALA-YN-----GNLTALDLRSGQIMWKREL-----G---SVNDFIVDGNRIY 281 (376)
T ss_dssp CC-----------CCCCCCEEETTE-EEEEC-TT-----SCEEEEETTTCCEEEEECC-----C---CEEEEEEETTEEE
T ss_pred ccCCCCcccccccccCCCcEEECCE-EEEEe-cC-----cEEEEEECCCCcEEeeccC-----C---CCCCceEECCEEE
Confidence 111111 11222334444 66643 22 258999997764 66431 1 1234556688999
Q ss_pred EEecCCCCCccCeEEEEECCCCc--EEEeecCCCCCCCCCcceEEEEEEeCCCcEEEEEcCCCCCCCCeEEEEEccCCc
Q 005043 314 IAGGGSRKKRHAETLIFDILKGE--WSVAITSPSSSVTSNKGFTLVLVQHKEKDFLVAFGGIKKEPSNQVEVLSIEKNE 390 (717)
Q Consensus 314 V~GG~~~~~~~~dv~~yD~~t~~--W~~l~~~p~~~~~~r~g~s~v~v~~~~~~~I~v~GG~~~~~~n~v~vyd~~~~e 390 (717)
+.... ..+++||+.+.+ |+.-. .. .....+.++. ++.||+... ...+++||+.+.+
T Consensus 282 ~~~~~------g~l~~~d~~tG~~~w~~~~-~~-----~~~~~~~~~~----~~~l~v~~~-----~g~l~~~d~~tG~ 339 (376)
T 3q7m_A 282 LVDQN------DRVMALTIDGGVTLWTQSD-LL-----HRLLTSPVLY----NGNLVVGDS-----EGYLHWINVEDGR 339 (376)
T ss_dssp EEETT------CCEEEEETTTCCEEEEECT-TT-----TSCCCCCEEE----TTEEEEECT-----TSEEEEEETTTCC
T ss_pred EEcCC------CeEEEEECCCCcEEEeecc-cC-----CCcccCCEEE----CCEEEEEeC-----CCeEEEEECCCCc
Confidence 87641 359999998765 66521 01 1111222223 566665432 1268888888765
No 30
>3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans}
Probab=97.48 E-value=0.03 Score=60.02 Aligned_cols=241 Identities=12% Similarity=0.034 Sum_probs=124.1
Q ss_pred CCEEEEEcccCCCCCcccEEEEEcCCCceEEccccccCCCCCCCCCCCcccceEEEE-ECCEEEEEeccCCCCCCceEEE
Q 005043 98 GNKMIVVGGESGNGLLDDVQVLNFDRFSWTAASSKLYLSPSSLPLKIPACRGHSLIS-WGKKVLLVGGKTDSGSDRVSVW 176 (717)
Q Consensus 98 ~~~lyV~GG~~~~~~~~~v~~yd~~t~~W~~l~~~~~~~~~~~~~~~p~r~~hs~v~-~~~~Iyv~GG~~~~~~~~~~v~ 176 (717)
++.+|+.++.++ .+.+||+.+.......+... ...+...-.+++. .++.+|+.|+.+ ..+.
T Consensus 133 ~~~~~~~~~~~~-----~i~~~d~~~g~~~~~~~~~~-------~~~~~~~v~~~~~~~~~~~~~s~~~d------~~v~ 194 (433)
T 3bws_A 133 NTRLAIPLLEDE-----GMDVLDINSGQTVRLSPPEK-------YKKKLGFVETISIPEHNELWVSQMQA------NAVH 194 (433)
T ss_dssp SSEEEEEBTTSS-----SEEEEETTTCCEEEECCCHH-------HHTTCCEEEEEEEGGGTEEEEEEGGG------TEEE
T ss_pred CCeEEEEeCCCC-----eEEEEECCCCeEeeecCccc-------ccccCCceeEEEEcCCCEEEEEECCC------CEEE
Confidence 677888876542 58999999887655332100 0001111122222 267888888753 2699
Q ss_pred EEECCCCcEEEeeecCCCCCCceeeEEEEE--CCEEEEEccccCCCCCcCcEEEEEcCCCceEeccCCCCCCCCCcccEE
Q 005043 177 TFDTETECWSVVEAKGDIPVARSGHTVVRA--SSVLILFGGEDGKRRKLNDLHMFDLKSLTWLPLHCTGTGPSPRSNHVA 254 (717)
Q Consensus 177 ~yD~~t~~W~~l~~~g~~P~~R~~hs~~~~--~~~Lyv~GG~~~~~~~~~~v~~yD~~t~~W~~l~~~g~~P~~R~~~aa 254 (717)
+||+.+.+....-. .....-.+++.. +..+|+.|+.+ ..+.+||+.+.+....- +....-..+
T Consensus 195 ~~d~~~~~~~~~~~----~~~~~~~~~~~~~~~~~l~~~~~~~------~~i~~~d~~~~~~~~~~-----~~~~~~~~~ 259 (433)
T 3bws_A 195 VFDLKTLAYKATVD----LTGKWSKILLYDPIRDLVYCSNWIS------EDISVIDRKTKLEIRKT-----DKIGLPRGL 259 (433)
T ss_dssp EEETTTCCEEEEEE----CSSSSEEEEEEETTTTEEEEEETTT------TEEEEEETTTTEEEEEC-----CCCSEEEEE
T ss_pred EEECCCceEEEEEc----CCCCCeeEEEEcCCCCEEEEEecCC------CcEEEEECCCCcEEEEe-----cCCCCceEE
Confidence 99998866433221 111122333333 34677765433 36899999887654332 111122333
Q ss_pred EEE-CCcEEEEEcCCCCCC---CCCeEEEEECCCCcEEEeecCCCCCCCCcceEEEEE--CCEEEEEecCCCCCccCeEE
Q 005043 255 ALY-DDKNLLIFGGSSKSK---TLNDLYSLDFETMIWTRIKIRGFHPSPRAGCCGVLC--GTKWYIAGGGSRKKRHAETL 328 (717)
Q Consensus 255 ~~~-~~~~lyV~GG~~~~~---~~ndv~~yd~~t~~W~~v~~~g~~P~~R~~~sav~~--~~~IyV~GG~~~~~~~~dv~ 328 (717)
+.. +++ .+++++..... .-..+++||+.+......... +. ...+++.. ++.+|+.++.+ ..+.
T Consensus 260 ~~~~~g~-~l~~~~~~~~~~~~~dg~i~~~d~~~~~~~~~~~~---~~--~~~~~~~~~~g~~l~~~~~~~-----~~v~ 328 (433)
T 3bws_A 260 LLSKDGK-ELYIAQFSASNQESGGGRLGIYSMDKEKLIDTIGP---PG--NKRHIVSGNTENKIYVSDMCC-----SKIE 328 (433)
T ss_dssp EECTTSS-EEEEEEEESCTTCSCCEEEEEEETTTTEEEEEEEE---EE--CEEEEEECSSTTEEEEEETTT-----TEEE
T ss_pred EEcCCCC-EEEEEECCCCccccCCCeEEEEECCCCcEEeeccC---CC--CcceEEECCCCCEEEEEecCC-----CEEE
Confidence 333 344 44444432211 124699999988765443321 11 11122222 34788887654 3599
Q ss_pred EEECCCCcEEEeecCCCCCCCCCcceEEEEEEeCCCcEEEEEcCCCCC----------CCCeEEEEEccCCc
Q 005043 329 IFDILKGEWSVAITSPSSSVTSNKGFTLVLVQHKEKDFLVAFGGIKKE----------PSNQVEVLSIEKNE 390 (717)
Q Consensus 329 ~yD~~t~~W~~l~~~p~~~~~~r~g~s~v~v~~~~~~~I~v~GG~~~~----------~~n~v~vyd~~~~e 390 (717)
+||+.+.+-.... +. ......+.+. +++..|++.+...+. ....+++||+.+.+
T Consensus 329 v~d~~~~~~~~~~--~~-----~~~~~~~~~s-~dg~~l~~~~~~~~~~~~~~~~~g~~dg~v~~~d~~~~~ 392 (433)
T 3bws_A 329 VYDLKEKKVQKSI--PV-----FDKPNTIALS-PDGKYLYVSCRGPNHPTEGYLKKGLVLGKVYVIDTTTDT 392 (433)
T ss_dssp EEETTTTEEEEEE--EC-----SSSEEEEEEC-TTSSEEEEEECCCCCTTTCTTSCCSSCCEEEEEETTTTE
T ss_pred EEECCCCcEEEEe--cC-----CCCCCeEEEc-CCCCEEEEEecCCCccccccccccccceEEEEEECCCCc
Confidence 9999876544332 11 1112233332 233445544432211 13489999987765
No 31
>3nol_A Glutamine cyclotransferase; beta-propeller, glutaminyl cyclase, pyrogl transferase; 1.70A {Zymomonas mobilis} PDB: 3nom_A
Probab=97.45 E-value=0.027 Score=57.59 Aligned_cols=164 Identities=12% Similarity=-0.024 Sum_probs=104.6
Q ss_pred cceEEEEECCEEEEEeccCCCCCCceEEEEEECCCCcEEEeeecCCCCCCceeeEEEEECCEEEEEccccCCCCCcCcEE
Q 005043 148 RGHSLISWGKKVLLVGGKTDSGSDRVSVWTFDTETECWSVVEAKGDIPVARSGHTVVRASSVLILFGGEDGKRRKLNDLH 227 (717)
Q Consensus 148 ~~hs~v~~~~~Iyv~GG~~~~~~~~~~v~~yD~~t~~W~~l~~~g~~P~~R~~hs~~~~~~~Lyv~GG~~~~~~~~~~v~ 227 (717)
+-.++...++.+|+..|..+ .+.+.++|+.|++-..--. ++...++.+++..+++||+.... -+.++
T Consensus 44 ftqGL~~~~~~LyestG~~g----~S~v~~vD~~Tgkv~~~~~---l~~~~FgeGit~~g~~ly~ltw~------~~~v~ 110 (262)
T 3nol_A 44 FTEGFFYRNGYFYESTGLNG----RSSIRKVDIESGKTLQQIE---LGKRYFGEGISDWKDKIVGLTWK------NGLGF 110 (262)
T ss_dssp EEEEEEEETTEEEEEEEETT----EEEEEEECTTTCCEEEEEE---CCTTCCEEEEEEETTEEEEEESS------SSEEE
T ss_pred ccceEEEECCEEEEECCCCC----CceEEEEECCCCcEEEEEe---cCCccceeEEEEeCCEEEEEEee------CCEEE
Confidence 34566666899999999743 3479999999988654432 56666777888899999999542 36799
Q ss_pred EEEcCCCceEeccCCCCCCCCCcccEEEEECCcEEEEEcCCCCCCCCCeEEEEECCCCcEEEeecCCCCCCCCcce-EEE
Q 005043 228 MFDLKSLTWLPLHCTGTGPSPRSNHVAALYDDKNLLIFGGSSKSKTLNDLYSLDFETMIWTRIKIRGFHPSPRAGC-CGV 306 (717)
Q Consensus 228 ~yD~~t~~W~~l~~~g~~P~~R~~~aa~~~~~~~lyV~GG~~~~~~~ndv~~yd~~t~~W~~v~~~g~~P~~R~~~-sav 306 (717)
+||+++.+-..- ++.+-.+.+++ .+++.+|+.-| .+.++.+|+.+.+-..--..+..+.+.... .+.
T Consensus 111 v~D~~t~~~~~t-----i~~~~eG~glt-~dg~~L~~SdG------s~~i~~iDp~T~~v~~~I~V~~~g~~~~~lNELe 178 (262)
T 3nol_A 111 VWNIRNLRQVRS-----FNYDGEGWGLT-HNDQYLIMSDG------TPVLRFLDPESLTPVRTITVTAHGEELPELNELE 178 (262)
T ss_dssp EEETTTCCEEEE-----EECSSCCCCEE-ECSSCEEECCS------SSEEEEECTTTCSEEEEEECEETTEECCCEEEEE
T ss_pred EEECccCcEEEE-----EECCCCceEEe-cCCCEEEEECC------CCeEEEEcCCCCeEEEEEEeccCCccccccceeE
Confidence 999988764322 22222444455 45555888654 257999999986644332211111111111 234
Q ss_pred EECCEEEEEecCCCCCccCeEEEEECCCCcEEEee
Q 005043 307 LCGTKWYIAGGGSRKKRHAETLIFDILKGEWSVAI 341 (717)
Q Consensus 307 ~~~~~IyV~GG~~~~~~~~dv~~yD~~t~~W~~l~ 341 (717)
..+++||+---. .++|.+.|+.+.+-....
T Consensus 179 ~~~G~lyan~w~-----~~~I~vIDp~tG~V~~~I 208 (262)
T 3nol_A 179 WVDGEIFANVWQ-----TNKIVRIDPETGKVTGII 208 (262)
T ss_dssp EETTEEEEEETT-----SSEEEEECTTTCBEEEEE
T ss_pred EECCEEEEEEcc-----CCeEEEEECCCCcEEEEE
Confidence 458998854321 357999999998755543
No 32
>1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C
Probab=97.41 E-value=0.036 Score=57.58 Aligned_cols=198 Identities=14% Similarity=0.106 Sum_probs=96.1
Q ss_pred CCEEEEEcccCCCCCcccEEEEEcCCCceEEccccccCCCCCCCCCCCcccceEEEEE-CCEEEEEeccCCCCCCceEEE
Q 005043 98 GNKMIVVGGESGNGLLDDVQVLNFDRFSWTAASSKLYLSPSSLPLKIPACRGHSLISW-GKKVLLVGGKTDSGSDRVSVW 176 (717)
Q Consensus 98 ~~~lyV~GG~~~~~~~~~v~~yd~~t~~W~~l~~~~~~~~~~~~~~~p~r~~hs~v~~-~~~Iyv~GG~~~~~~~~~~v~ 176 (717)
++.+++.|+.++ .+.+||+.+..+...... ......-.++... ++.+++.|+.+. .+.
T Consensus 63 ~~~~l~~~~~dg-----~i~vwd~~~~~~~~~~~~----------~~~~~~v~~~~~~~~~~~l~~~~~d~------~v~ 121 (372)
T 1k8k_C 63 DSNRIVTCGTDR-----NAYVWTLKGRTWKPTLVI----------LRINRAARCVRWAPNEKKFAVGSGSR------VIS 121 (372)
T ss_dssp TTTEEEEEETTS-----CEEEEEEETTEEEEEEEC----------CCCSSCEEEEEECTTSSEEEEEETTS------SEE
T ss_pred CCCEEEEEcCCC-----eEEEEECCCCeeeeeEEe----------ecCCCceeEEEECCCCCEEEEEeCCC------EEE
Confidence 466777777543 588999988877654431 0111111222222 566777776532 355
Q ss_pred EEECCCCc-EEEeeecCCCCCCceeeEEEEE-CCEEEEEccccCCCCCcCcEEEEEcCCCc---------eE-------e
Q 005043 177 TFDTETEC-WSVVEAKGDIPVARSGHTVVRA-SSVLILFGGEDGKRRKLNDLHMFDLKSLT---------WL-------P 238 (717)
Q Consensus 177 ~yD~~t~~-W~~l~~~g~~P~~R~~hs~~~~-~~~Lyv~GG~~~~~~~~~~v~~yD~~t~~---------W~-------~ 238 (717)
+||+.+.. |...... ..+....-.+++.. ++.+++.|+.++ .+.+||+.... |. .
T Consensus 122 i~d~~~~~~~~~~~~~-~~~~~~~i~~~~~~~~~~~l~~~~~dg------~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~ 194 (372)
T 1k8k_C 122 ICYFEQENDWWVCKHI-KKPIRSTVLSLDWHPNSVLLAAGSCDF------KCRIFSAYIKEVEERPAPTPWGSKMPFGEL 194 (372)
T ss_dssp EEEEETTTTEEEEEEE-CTTCCSCEEEEEECTTSSEEEEEETTS------CEEEEECCCTTTSCCCCCBTTBSCCCTTCE
T ss_pred EEEecCCCcceeeeee-ecccCCCeeEEEEcCCCCEEEEEcCCC------CEEEEEcccccccccccccccccccchhhh
Confidence 55554433 3332211 11212222233333 466777776543 47888854211 11 1
Q ss_pred ccCCCCCC-CCCcccEEEEECCcEEEEEcCCCCCCCCCeEEEEECCCCcEEEeecCCCCCCCCcceEEEE-ECCEEEEEe
Q 005043 239 LHCTGTGP-SPRSNHVAALYDDKNLLIFGGSSKSKTLNDLYSLDFETMIWTRIKIRGFHPSPRAGCCGVL-CGTKWYIAG 316 (717)
Q Consensus 239 l~~~g~~P-~~R~~~aa~~~~~~~lyV~GG~~~~~~~ndv~~yd~~t~~W~~v~~~g~~P~~R~~~sav~-~~~~IyV~G 316 (717)
+. .+. ....-.+++...+..+++.|+.+ ..+.+||+.+..-...-.. ... ...+++. -++.+++.|
T Consensus 195 ~~---~~~~~~~~v~~~~~~~~~~~l~~~~~d-----~~i~i~d~~~~~~~~~~~~---~~~-~v~~~~~~~~~~~l~~~ 262 (372)
T 1k8k_C 195 MF---ESSSSCGWVHGVCFSANGSRVAWVSHD-----STVCLADADKKMAVATLAS---ETL-PLLAVTFITESSLVAAG 262 (372)
T ss_dssp EE---ECCCCSSCEEEEEECSSSSEEEEEETT-----TEEEEEEGGGTTEEEEEEC---SSC-CEEEEEEEETTEEEEEE
T ss_pred eE---ecCCCCCeEEEEEECCCCCEEEEEeCC-----CEEEEEECCCCceeEEEcc---CCC-CeEEEEEecCCCEEEEE
Confidence 11 111 11112233333333366666654 3599999977664333221 111 1122222 367766655
Q ss_pred cCCCCCccCeEEEEECCC--CcEEEee
Q 005043 317 GGSRKKRHAETLIFDILK--GEWSVAI 341 (717)
Q Consensus 317 G~~~~~~~~dv~~yD~~t--~~W~~l~ 341 (717)
.++ .+.+||+.+ ..|..+.
T Consensus 263 -~d~-----~i~i~~~~~~~~~~~~~~ 283 (372)
T 1k8k_C 263 -HDC-----FPVLFTYDSAAGKLSFGG 283 (372)
T ss_dssp -TTS-----SCEEEEEETTTTEEEECC
T ss_pred -eCC-----eEEEEEccCcCceEEEee
Confidence 433 367777777 8887764
No 33
>4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ...
Probab=97.40 E-value=0.095 Score=53.48 Aligned_cols=233 Identities=11% Similarity=0.017 Sum_probs=118.6
Q ss_pred CCEEEEEcccCCCCCcccEEEEEcCCCceEEccccccCCCCCCCCCCCcccceEEEEE-CCEEEEEeccCCCCCCceEEE
Q 005043 98 GNKMIVVGGESGNGLLDDVQVLNFDRFSWTAASSKLYLSPSSLPLKIPACRGHSLISW-GKKVLLVGGKTDSGSDRVSVW 176 (717)
Q Consensus 98 ~~~lyV~GG~~~~~~~~~v~~yd~~t~~W~~l~~~~~~~~~~~~~~~p~r~~hs~v~~-~~~Iyv~GG~~~~~~~~~~v~ 176 (717)
++.+++.|+.++ .+.+||..+......-. .....-.+++.. ++.+++.|+.+ ..+.
T Consensus 34 ~~~~l~s~~~dg-----~i~iw~~~~~~~~~~~~------------~h~~~v~~~~~~~~~~~l~s~~~d------~~i~ 90 (312)
T 4ery_A 34 NGEWLASSSADK-----LIKIWGAYDGKFEKTIS------------GHKLGISDVAWSSDSNLLVSASDD------KTLK 90 (312)
T ss_dssp TSSEEEEEETTS-----CEEEEETTTCCEEEEEC------------CCSSCEEEEEECTTSSEEEEEETT------SEEE
T ss_pred CCCEEEEeeCCC-----eEEEEeCCCcccchhhc------------cCCCceEEEEEcCCCCEEEEECCC------CEEE
Confidence 455666776553 47888887776544322 011111223222 56677777764 2688
Q ss_pred EEECCCCcEEEeeecCCCCCCceeeEEEEE-CCEEEEEccccCCCCCcCcEEEEEcCCCceEeccCCCCCCCCCcccEEE
Q 005043 177 TFDTETECWSVVEAKGDIPVARSGHTVVRA-SSVLILFGGEDGKRRKLNDLHMFDLKSLTWLPLHCTGTGPSPRSNHVAA 255 (717)
Q Consensus 177 ~yD~~t~~W~~l~~~g~~P~~R~~hs~~~~-~~~Lyv~GG~~~~~~~~~~v~~yD~~t~~W~~l~~~g~~P~~R~~~aa~ 255 (717)
+||+.+..-...-. .... .-.++... ++.+++.|+.++ .+.+||+.+.+-...-. .. ...-.++.
T Consensus 91 vwd~~~~~~~~~~~---~~~~-~v~~~~~~~~~~~l~s~~~d~------~i~iwd~~~~~~~~~~~--~~--~~~v~~~~ 156 (312)
T 4ery_A 91 IWDVSSGKCLKTLK---GHSN-YVFCCNFNPQSNLIVSGSFDE------SVRIWDVKTGKCLKTLP--AH--SDPVSAVH 156 (312)
T ss_dssp EEETTTCCEEEEEE---CCSS-CEEEEEECSSSSEEEEEETTS------CEEEEETTTCCEEEEEC--CC--SSCEEEEE
T ss_pred EEECCCCcEEEEEc---CCCC-CEEEEEEcCCCCEEEEEeCCC------cEEEEECCCCEEEEEec--CC--CCcEEEEE
Confidence 99998776432211 0111 11122222 456777777553 48899998765332210 11 11112233
Q ss_pred EECCcEEEEEcCCCCCCCCCeEEEEECCCCcEEEeecCCCCCCCCcceEEEEE--CCEEEEEecCCCCCccCeEEEEECC
Q 005043 256 LYDDKNLLIFGGSSKSKTLNDLYSLDFETMIWTRIKIRGFHPSPRAGCCGVLC--GTKWYIAGGGSRKKRHAETLIFDIL 333 (717)
Q Consensus 256 ~~~~~~lyV~GG~~~~~~~ndv~~yd~~t~~W~~v~~~g~~P~~R~~~sav~~--~~~IyV~GG~~~~~~~~dv~~yD~~ 333 (717)
...+..+++.|+.++ .+..||+.+......... .. ......+.+ +++.++.|+.++ .+.+||+.
T Consensus 157 ~~~~~~~l~~~~~d~-----~i~~wd~~~~~~~~~~~~---~~-~~~~~~~~~~~~~~~l~~~~~d~-----~i~iwd~~ 222 (312)
T 4ery_A 157 FNRDGSLIVSSSYDG-----LCRIWDTASGQCLKTLID---DD-NPPVSFVKFSPNGKYILAATLDN-----TLKLWDYS 222 (312)
T ss_dssp ECTTSSEEEEEETTS-----CEEEEETTTCCEEEEECC---SS-CCCEEEEEECTTSSEEEEEETTT-----EEEEEETT
T ss_pred EcCCCCEEEEEeCCC-----cEEEEECCCCceeeEEec---cC-CCceEEEEECCCCCEEEEEcCCC-----eEEEEECC
Confidence 333333677777654 489999987765433211 11 111122222 566777777553 58999998
Q ss_pred CCcEEEeecCCCCCCCCCcceEEEEEEeCCCcEEEEEcCCCCCCCCeEEEEEccCCc
Q 005043 334 KGEWSVAITSPSSSVTSNKGFTLVLVQHKEKDFLVAFGGIKKEPSNQVEVLSIEKNE 390 (717)
Q Consensus 334 t~~W~~l~~~p~~~~~~r~g~s~v~v~~~~~~~I~v~GG~~~~~~n~v~vyd~~~~e 390 (717)
+..-......... ...... .... ..++.+++.||.++ .|.+||+.+.+
T Consensus 223 ~~~~~~~~~~~~~---~~~~~~-~~~~-~~~~~~l~sg~~dg----~i~vwd~~~~~ 270 (312)
T 4ery_A 223 KGKCLKTYTGHKN---EKYCIF-ANFS-VTGGKWIVSGSEDN----LVYIWNLQTKE 270 (312)
T ss_dssp TTEEEEEECSSCC---SSSCCC-EEEE-CSSSCEEEECCTTS----CEEEEETTTCC
T ss_pred CCcEEEEEEecCC---ceEEEE-EEEE-eCCCcEEEEECCCC----EEEEEECCCch
Confidence 8754332211111 111111 1111 12455667777643 57888887765
No 34
>3nok_A Glutaminyl cyclase; beta-propeller, cyclotransferase, pyrogl transferase; HET: MES DDQ; 1.65A {Myxococcus xanthus}
Probab=97.39 E-value=0.0073 Score=61.97 Aligned_cols=160 Identities=10% Similarity=0.043 Sum_probs=101.6
Q ss_pred ceeEEEEECCEEEEEcccCCCCCcccEEEEEcCCCceEEccccccCCCCCCCCCCCcccceEEEEECCEEEEEeccCCCC
Q 005043 90 FNHAAAVIGNKMIVVGGESGNGLLDDVQVLNFDRFSWTAASSKLYLSPSSLPLKIPACRGHSLISWGKKVLLVGGKTDSG 169 (717)
Q Consensus 90 ~~haav~~~~~lyV~GG~~~~~~~~~v~~yd~~t~~W~~l~~~~~~~~~~~~~~~p~r~~hs~v~~~~~Iyv~GG~~~~~ 169 (717)
+..+....++.||+..|..+. +.++|+.+++=..-. . .+..++.+++..+++||+....
T Consensus 56 ftqGL~~~~~~Ly~stG~~g~-----v~~iD~~Tgkv~~~~-l-----------~~~~FgeGit~~g~~Ly~ltw~---- 114 (268)
T 3nok_A 56 FTQGLVFHQGHFFESTGHQGT-----LRQLSLESAQPVWME-R-----------LGNIFAEGLASDGERLYQLTWT---- 114 (268)
T ss_dssp CEEEEEEETTEEEEEETTTTE-----EEECCSSCSSCSEEE-E-----------CTTCCEEEEEECSSCEEEEESS----
T ss_pred ccceEEEECCEEEEEcCCCCE-----EEEEECCCCcEEeEE-C-----------CCCcceeEEEEeCCEEEEEEcc----
Confidence 345666778999999997643 889999987432221 1 1233456788889999998554
Q ss_pred CCceEEEEEECCCCcEEEeeecCCCCCCceeeEEEEECCEEEEEccccCCCCCcCcEEEEEcCCCceEeccCCCCCCCCC
Q 005043 170 SDRVSVWTFDTETECWSVVEAKGDIPVARSGHTVVRASSVLILFGGEDGKRRKLNDLHMFDLKSLTWLPLHCTGTGPSPR 249 (717)
Q Consensus 170 ~~~~~v~~yD~~t~~W~~l~~~g~~P~~R~~hs~~~~~~~Lyv~GG~~~~~~~~~~v~~yD~~t~~W~~l~~~g~~P~~R 249 (717)
.+.+++||+.+.+-..-- +.+-.+.+++..++.||+.-| .+.++.+|+.+.+-..--..+..+.+.
T Consensus 115 --~~~v~V~D~~Tl~~~~ti-----~~~~eGwGLt~Dg~~L~vSdG-------s~~l~~iDp~T~~v~~~I~V~~~g~~v 180 (268)
T 3nok_A 115 --EGLLFTWSGMPPQRERTT-----RYSGEGWGLCYWNGKLVRSDG-------GTMLTFHEPDGFALVGAVQVKLRGQPV 180 (268)
T ss_dssp --SCEEEEEETTTTEEEEEE-----ECSSCCCCEEEETTEEEEECS-------SSEEEEECTTTCCEEEEEECEETTEEC
T ss_pred --CCEEEEEECCcCcEEEEE-----eCCCceeEEecCCCEEEEECC-------CCEEEEEcCCCCeEEEEEEeCCCCccc
Confidence 247999999987654322 223356777788889999843 357999999987654321111222221
Q ss_pred cc-cEEEEECCcEEEEEcCCCCCCCCCeEEEEECCCCcEEEe
Q 005043 250 SN-HVAALYDDKNLLIFGGSSKSKTLNDLYSLDFETMIWTRI 290 (717)
Q Consensus 250 ~~-~aa~~~~~~~lyV~GG~~~~~~~ndv~~yd~~t~~W~~v 290 (717)
.. --+...+++ ||+-- + ..+.|.+.|+.+++-...
T Consensus 181 ~~lNeLe~~dG~-lyanv-w----~s~~I~vIDp~TG~V~~~ 216 (268)
T 3nok_A 181 ELINELECANGV-IYANI-W----HSSDVLEIDPATGTVVGV 216 (268)
T ss_dssp CCEEEEEEETTE-EEEEE-T----TCSEEEEECTTTCBEEEE
T ss_pred ccccccEEeCCE-EEEEE-C----CCCeEEEEeCCCCcEEEE
Confidence 11 123344665 77532 1 246899999999875433
No 35
>3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A*
Probab=97.37 E-value=0.17 Score=52.04 Aligned_cols=241 Identities=15% Similarity=0.039 Sum_probs=123.9
Q ss_pred CCEEEEEcccCCC-CCcccEEEEEcCCCceEEccccccCCCCCCCCCCCcccceEEEEE-CCEEEEEeccCCCCCCceEE
Q 005043 98 GNKMIVVGGESGN-GLLDDVQVLNFDRFSWTAASSKLYLSPSSLPLKIPACRGHSLISW-GKKVLLVGGKTDSGSDRVSV 175 (717)
Q Consensus 98 ~~~lyV~GG~~~~-~~~~~v~~yd~~t~~W~~l~~~~~~~~~~~~~~~p~r~~hs~v~~-~~~Iyv~GG~~~~~~~~~~v 175 (717)
++.+|+....... .....++++|+.+.+....-+. .......+..- ++.+|+.++.. ..+
T Consensus 52 g~~l~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~~------------~~~~~~~~~s~dg~~l~v~~~~~------~~v 113 (353)
T 3vgz_A 52 ENALWLATSQSRKLDKGGVVYRLDPVTLEVTQAIHN------------DLKPFGATINNTTQTLWFGNTVN------SAV 113 (353)
T ss_dssp TTEEEEEECCCTTTEESEEEEEECTTTCCEEEEEEE------------SSCCCSEEEETTTTEEEEEETTT------TEE
T ss_pred CCEEEEEcCCCcCCCCCccEEEEcCCCCeEEEEEec------------CCCcceEEECCCCCEEEEEecCC------CEE
Confidence 3578776532111 1245799999988754433221 01111122222 45688776642 279
Q ss_pred EEEECCCCcEEEeeecCCCCC-----CceeeEEEEE--CCEEEEEccccCCCCCcCcEEEEEcCCCceEeccC-CCCCCC
Q 005043 176 WTFDTETECWSVVEAKGDIPV-----ARSGHTVVRA--SSVLILFGGEDGKRRKLNDLHMFDLKSLTWLPLHC-TGTGPS 247 (717)
Q Consensus 176 ~~yD~~t~~W~~l~~~g~~P~-----~R~~hs~~~~--~~~Lyv~GG~~~~~~~~~~v~~yD~~t~~W~~l~~-~g~~P~ 247 (717)
++||+.+.+-...-..+.... +...+.++.. ++.+|+.+... -..+++||+.+.+-...-. .+..|
T Consensus 114 ~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~-----~~~i~~~d~~~~~~~~~~~~~~~~~- 187 (353)
T 3vgz_A 114 TAIDAKTGEVKGRLVLDDRKRTEEVRPLQPRELVADDATNTVYISGIGK-----ESVIWVVDGGNIKLKTAIQNTGKMS- 187 (353)
T ss_dssp EEEETTTCCEEEEEESCCCCCCSSCCCCEEEEEEEETTTTEEEEEEESS-----SCEEEEEETTTTEEEEEECCCCTTC-
T ss_pred EEEeCCCCeeEEEEecCCCccccccCCCCCceEEECCCCCEEEEEecCC-----CceEEEEcCCCCceEEEecCCCCcc-
Confidence 999999877432221111110 1122344443 35677765321 2459999998776433221 11111
Q ss_pred CCcccEEEEE-CCcEEEEEcCCCCCCCCCeEEEEECCCCcEEEeecCCCCCCCCcceEEEEE--CCEEEEEecCCCCCcc
Q 005043 248 PRSNHVAALY-DDKNLLIFGGSSKSKTLNDLYSLDFETMIWTRIKIRGFHPSPRAGCCGVLC--GTKWYIAGGGSRKKRH 324 (717)
Q Consensus 248 ~R~~~aa~~~-~~~~lyV~GG~~~~~~~ndv~~yd~~t~~W~~v~~~g~~P~~R~~~sav~~--~~~IyV~GG~~~~~~~ 324 (717)
+.++.. +++.+|+... -+.+++||+.+..-......+.........+++.. ++.+|+.+...
T Consensus 188 ----~~~~~s~dg~~l~~~~~------~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~----- 252 (353)
T 3vgz_A 188 ----TGLALDSEGKRLYTTNA------DGELITIDTADNKILSRKKLLDDGKEHFFINISLDTARQRAFITDSKA----- 252 (353)
T ss_dssp ----CCCEEETTTTEEEEECT------TSEEEEEETTTTEEEEEEECCCSSSCCCEEEEEEETTTTEEEEEESSS-----
T ss_pred ----ceEEECCCCCEEEEEcC------CCeEEEEECCCCeEEEEEEcCCCCCCcccceEEECCCCCEEEEEeCCC-----
Confidence 223333 5565666543 24689999988765433322111111222233333 45677766432
Q ss_pred CeEEEEECCCCcEEEeecCCCCCCCCCcceEEEEEEeCCCcEEEEEcCCCCCCCCeEEEEEccCCc
Q 005043 325 AETLIFDILKGEWSVAITSPSSSVTSNKGFTLVLVQHKEKDFLVAFGGIKKEPSNQVEVLSIEKNE 390 (717)
Q Consensus 325 ~dv~~yD~~t~~W~~l~~~p~~~~~~r~g~s~v~v~~~~~~~I~v~GG~~~~~~n~v~vyd~~~~e 390 (717)
+.+++||+.+.+.......+ .+ .. +.+ .+++..+|+.+..+ +.+.+||+.+.+
T Consensus 253 ~~v~~~d~~~~~~~~~~~~~----~~---~~-~~~-s~dg~~l~v~~~~~----~~v~~~d~~~~~ 305 (353)
T 3vgz_A 253 AEVLVVDTRNGNILAKVAAP----ES---LA-VLF-NPARNEAYVTHRQA----GKVSVIDAKSYK 305 (353)
T ss_dssp SEEEEEETTTCCEEEEEECS----SC---CC-EEE-ETTTTEEEEEETTT----TEEEEEETTTTE
T ss_pred CEEEEEECCCCcEEEEEEcC----CC---ce-EEE-CCCCCEEEEEECCC----CeEEEEECCCCe
Confidence 46999999887765433221 11 12 223 23455677765432 378999988766
No 36
>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B*
Probab=97.34 E-value=0.082 Score=57.15 Aligned_cols=227 Identities=15% Similarity=0.153 Sum_probs=119.3
Q ss_pred CCEEEEEcccCCCCCcccEEEEEcCCCceEEccccccCCCCCCCCCCCcccceEEEEECCEEEEEeccCCCCCCceEEEE
Q 005043 98 GNKMIVVGGESGNGLLDDVQVLNFDRFSWTAASSKLYLSPSSLPLKIPACRGHSLISWGKKVLLVGGKTDSGSDRVSVWT 177 (717)
Q Consensus 98 ~~~lyV~GG~~~~~~~~~v~~yd~~t~~W~~l~~~~~~~~~~~~~~~p~r~~hs~v~~~~~Iyv~GG~~~~~~~~~~v~~ 177 (717)
.+.+++.|+.++ .+.+||+.+..-...-. .... ....+.+++..++.|+.+ ..+.+
T Consensus 168 ~~~~l~s~~~dg-----~i~vwd~~~~~~~~~~~------------~h~~-~v~~~~~~~~~l~s~s~d------g~i~~ 223 (445)
T 2ovr_B 168 RDNIIISGSTDR-----TLKVWNAETGECIHTLY------------GHTS-TVRCMHLHEKRVVSGSRD------ATLRV 223 (445)
T ss_dssp ETTEEEEEETTS-----CEEEEETTTTEEEEEEC------------CCSS-CEEEEEEETTEEEEEETT------SEEEE
T ss_pred cCCEEEEEeCCC-----eEEEEECCcCcEEEEEC------------CCCC-cEEEEEecCCEEEEEeCC------CEEEE
Confidence 355677777553 58899998874322211 1111 122233345556676653 26889
Q ss_pred EECCCCcEEEeeecCCCCCCceeeEEEEECCEEEEEccccCCCCCcCcEEEEEcCCCceEeccCCCCCCCCCcccEEEEE
Q 005043 178 FDTETECWSVVEAKGDIPVARSGHTVVRASSVLILFGGEDGKRRKLNDLHMFDLKSLTWLPLHCTGTGPSPRSNHVAALY 257 (717)
Q Consensus 178 yD~~t~~W~~l~~~g~~P~~R~~hs~~~~~~~Lyv~GG~~~~~~~~~~v~~yD~~t~~W~~l~~~g~~P~~R~~~aa~~~ 257 (717)
||+.+.+-...-. + .. ....++..++..++.|+.++ .+.+||+.+..-...- ........++.+
T Consensus 224 wd~~~~~~~~~~~-~-~~---~~v~~~~~~~~~l~~~~~dg------~i~iwd~~~~~~~~~~-----~~~~~~v~~~~~ 287 (445)
T 2ovr_B 224 WDIETGQCLHVLM-G-HV---AAVRCVQYDGRRVVSGAYDF------MVKVWDPETETCLHTL-----QGHTNRVYSLQF 287 (445)
T ss_dssp EESSSCCEEEEEE-C-CS---SCEEEEEECSSCEEEEETTS------CEEEEEGGGTEEEEEE-----CCCSSCEEEEEE
T ss_pred EECCCCcEEEEEc-C-Cc---ccEEEEEECCCEEEEEcCCC------EEEEEECCCCcEeEEe-----cCCCCceEEEEE
Confidence 9988766433221 0 11 11222334777777777543 4788998776533221 111112233444
Q ss_pred CCcEEEEEcCCCCCCCCCeEEEEECCCCcEEEeecCCCCCCCCcceEEEEECCEEEEEecCCCCCccCeEEEEECCCCcE
Q 005043 258 DDKNLLIFGGSSKSKTLNDLYSLDFETMIWTRIKIRGFHPSPRAGCCGVLCGTKWYIAGGGSRKKRHAETLIFDILKGEW 337 (717)
Q Consensus 258 ~~~~lyV~GG~~~~~~~ndv~~yd~~t~~W~~v~~~g~~P~~R~~~sav~~~~~IyV~GG~~~~~~~~dv~~yD~~t~~W 337 (717)
++. .++.|+.++ .+..||+.+..-...-. .......+...++.+++.|+.++ .+.+||+.+..-
T Consensus 288 ~~~-~l~~~~~d~-----~i~i~d~~~~~~~~~~~-----~~~~~v~~~~~~~~~l~~~~~dg-----~i~vwd~~~~~~ 351 (445)
T 2ovr_B 288 DGI-HVVSGSLDT-----SIRVWDVETGNCIHTLT-----GHQSLTSGMELKDNILVSGNADS-----TVKIWDIKTGQC 351 (445)
T ss_dssp CSS-EEEEEETTS-----CEEEEETTTCCEEEEEC-----CCCSCEEEEEEETTEEEEEETTS-----CEEEEETTTCCE
T ss_pred CCC-EEEEEeCCC-----eEEEEECCCCCEEEEEc-----CCcccEEEEEEeCCEEEEEeCCC-----eEEEEECCCCcE
Confidence 666 567776654 48999998766433221 11222233444566777777654 489999977654
Q ss_pred EEeecCCCCCCCCCcceEEEEEEeCCCcEEEEEcCCCCCCCCeEEEEEccCCcc
Q 005043 338 SVAITSPSSSVTSNKGFTLVLVQHKEKDFLVAFGGIKKEPSNQVEVLSIEKNES 391 (717)
Q Consensus 338 ~~l~~~p~~~~~~r~g~s~v~v~~~~~~~I~v~GG~~~~~~n~v~vyd~~~~eW 391 (717)
......+.. ......++.+ ++.+++.||.++ .|.+||+.+.+.
T Consensus 352 ~~~~~~~~~---~~~~v~~~~~----~~~~l~s~~~dg----~v~iwd~~~~~~ 394 (445)
T 2ovr_B 352 LQTLQGPNK---HQSAVTCLQF----NKNFVITSSDDG----TVKLWDLKTGEF 394 (445)
T ss_dssp EEEECSTTS---CSSCEEEEEE----CSSEEEEEETTS----EEEEEETTTCCE
T ss_pred EEEEccCCC---CCCCEEEEEE----CCCEEEEEeCCC----eEEEEECCCCce
Confidence 332211110 1112223333 234566666542 688888887663
No 37
>3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae}
Probab=97.33 E-value=0.014 Score=60.81 Aligned_cols=237 Identities=10% Similarity=0.074 Sum_probs=120.4
Q ss_pred CCEEEEEcccCCCCCcccEEEEEcCCCceEEccccccCCCCCCCCCCCcccceEEEEE-C--CEEEEEeccCCCCCCceE
Q 005043 98 GNKMIVVGGESGNGLLDDVQVLNFDRFSWTAASSKLYLSPSSLPLKIPACRGHSLISW-G--KKVLLVGGKTDSGSDRVS 174 (717)
Q Consensus 98 ~~~lyV~GG~~~~~~~~~v~~yd~~t~~W~~l~~~~~~~~~~~~~~~p~r~~hs~v~~-~--~~Iyv~GG~~~~~~~~~~ 174 (717)
++.+++.|+.++ .+.+||+....+..+... ......-.+++.. + +.+++.|+.+. .
T Consensus 22 ~~~~l~~~~~dg-----~i~iw~~~~~~~~~~~~~----------~~h~~~v~~~~~~~~~~~~~l~s~~~dg------~ 80 (379)
T 3jrp_A 22 YGKRLATCSSDK-----TIKIFEVEGETHKLIDTL----------TGHEGPVWRVDWAHPKFGTILASCSYDG------K 80 (379)
T ss_dssp SSSEEEEEETTS-----CEEEEEEETTEEEEEEEE----------CCCSSCEEEEEECCGGGCSEEEEEETTS------C
T ss_pred CCCEEEEEECCC-----cEEEEecCCCcceeeeEe----------cCCCCcEEEEEeCCCCCCCEEEEeccCC------E
Confidence 455667776543 488888887777665442 1111111233332 2 56777777642 5
Q ss_pred EEEEECCCCcEEEeeecCCCCCCceeeEEEEE-C--CEEEEEccccCCCCCcCcEEEEEcCCCceE-eccCCCCCCCCCc
Q 005043 175 VWTFDTETECWSVVEAKGDIPVARSGHTVVRA-S--SVLILFGGEDGKRRKLNDLHMFDLKSLTWL-PLHCTGTGPSPRS 250 (717)
Q Consensus 175 v~~yD~~t~~W~~l~~~g~~P~~R~~hs~~~~-~--~~Lyv~GG~~~~~~~~~~v~~yD~~t~~W~-~l~~~g~~P~~R~ 250 (717)
+.+||+.++.|..+..... ....-.+++.. + +.+++.|+.+ ..+.+||+.+.... ..... . ....
T Consensus 81 v~iwd~~~~~~~~~~~~~~--~~~~v~~~~~~~~~~~~~l~~~~~d------~~i~v~d~~~~~~~~~~~~~-~--~~~~ 149 (379)
T 3jrp_A 81 VLIWKEENGRWSQIAVHAV--HSASVNSVQWAPHEYGPLLLVASSD------GKVSVVEFKENGTTSPIIID-A--HAIG 149 (379)
T ss_dssp EEEEEEETTEEEEEEEECC--CSSCEEEEEECCGGGCSEEEEEETT------SEEEEEECCTTSCCCEEEEE-C--CTTC
T ss_pred EEEEEcCCCceeEeeeecC--CCcceEEEEeCCCCCCCEEEEecCC------CcEEEEecCCCCceeeEEec-C--CCCc
Confidence 8888999988876653211 11222233332 2 5677777654 34788888765321 11100 0 1111
Q ss_pred ccEEEEEC--------------CcEEEEEcCCCCCCCCCeEEEEECCCC--cEEEeecCCCCCCCCcce-EEEEE-C---
Q 005043 251 NHVAALYD--------------DKNLLIFGGSSKSKTLNDLYSLDFETM--IWTRIKIRGFHPSPRAGC-CGVLC-G--- 309 (717)
Q Consensus 251 ~~aa~~~~--------------~~~lyV~GG~~~~~~~ndv~~yd~~t~--~W~~v~~~g~~P~~R~~~-sav~~-~--- 309 (717)
-.+++... +. +++.|+.++ .|.+||+.+. .|..+... ....... +++.. +
T Consensus 150 v~~~~~~~~~~~~~~~~~~~~~~~-~l~~~~~dg-----~i~i~d~~~~~~~~~~~~~~---~~h~~~v~~~~~sp~~~~ 220 (379)
T 3jrp_A 150 VNSASWAPATIEEDGEHNGTKESR-KFVTGGADN-----LVKIWKYNSDAQTYVLESTL---EGHSDWVRDVAWSPTVLL 220 (379)
T ss_dssp EEEEEECCCC----------CTTC-EEEEEETTS-----CEEEEEEETTTTEEEEEEEE---CCCSSCEEEEEECCCCSS
T ss_pred eEEEEEcCccccccccccCCCCCC-EEEEEeCCC-----eEEEEEecCCCcceeeEEEE---ecccCcEeEEEECCCCCC
Confidence 12233332 44 677777654 4888887543 35544332 1111222 22322 4
Q ss_pred CEEEEEecCCCCCccCeEEEEECCCCc--EEEeecCCCCCCCCCcceEEEEEEeCCCcEEEEEcCCCCCCCCeEEEEEcc
Q 005043 310 TKWYIAGGGSRKKRHAETLIFDILKGE--WSVAITSPSSSVTSNKGFTLVLVQHKEKDFLVAFGGIKKEPSNQVEVLSIE 387 (717)
Q Consensus 310 ~~IyV~GG~~~~~~~~dv~~yD~~t~~--W~~l~~~p~~~~~~r~g~s~v~v~~~~~~~I~v~GG~~~~~~n~v~vyd~~ 387 (717)
+.+++.|+.++. +.+||+.+.. +..... .. .........+.+.. ++.++++|+.++ .+.+|++.
T Consensus 221 ~~~l~s~~~dg~-----i~iwd~~~~~~~~~~~~~-~~--~~~~~~v~~~~~s~--~g~~l~~~~~dg----~i~iw~~~ 286 (379)
T 3jrp_A 221 RSYLASVSQDRT-----CIIWTQDNEQGPWKKTLL-KE--EKFPDVLWRASWSL--SGNVLALSGGDN----KVTLWKEN 286 (379)
T ss_dssp SEEEEEEETTSC-----EEEEEESSTTSCCEEEES-SS--SCCSSCEEEEEECS--SSCCEEEEESSS----SEEEEEEE
T ss_pred CCeEEEEeCCCE-----EEEEeCCCCCccceeeee-cc--ccCCCcEEEEEEcC--CCCEEEEecCCC----cEEEEeCC
Confidence 688888887654 8888887753 222111 10 01112223333332 344566666543 57888877
Q ss_pred CC
Q 005043 388 KN 389 (717)
Q Consensus 388 ~~ 389 (717)
..
T Consensus 287 ~~ 288 (379)
T 3jrp_A 287 LE 288 (379)
T ss_dssp ET
T ss_pred CC
Confidence 43
No 38
>4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ...
Probab=97.31 E-value=0.15 Score=51.93 Aligned_cols=194 Identities=12% Similarity=0.105 Sum_probs=99.1
Q ss_pred CCEEEEEcccCCCCCcccEEEEEcCCCceEEccccccCCCCCCCCCCCcccceEEEEE-CCEEEEEeccCCCCCCceEEE
Q 005043 98 GNKMIVVGGESGNGLLDDVQVLNFDRFSWTAASSKLYLSPSSLPLKIPACRGHSLISW-GKKVLLVGGKTDSGSDRVSVW 176 (717)
Q Consensus 98 ~~~lyV~GG~~~~~~~~~v~~yd~~t~~W~~l~~~~~~~~~~~~~~~p~r~~hs~v~~-~~~Iyv~GG~~~~~~~~~~v~ 176 (717)
++++++.|+.++ .+.+||+.+..-...-. .....-.++... ++.+++.|+.+. .+.
T Consensus 76 ~~~~l~s~~~d~-----~i~vwd~~~~~~~~~~~------------~~~~~v~~~~~~~~~~~l~s~~~d~------~i~ 132 (312)
T 4ery_A 76 DSNLLVSASDDK-----TLKIWDVSSGKCLKTLK------------GHSNYVFCCNFNPQSNLIVSGSFDE------SVR 132 (312)
T ss_dssp TSSEEEEEETTS-----EEEEEETTTCCEEEEEE------------CCSSCEEEEEECSSSSEEEEEETTS------CEE
T ss_pred CCCEEEEECCCC-----EEEEEECCCCcEEEEEc------------CCCCCEEEEEEcCCCCEEEEEeCCC------cEE
Confidence 456777777553 58889988764322111 001111222222 456777777642 488
Q ss_pred EEECCCCcEEEeeecCCCCCCceeeEEEEE-CCEEEEEccccCCCCCcCcEEEEEcCCCceEeccCCCCCCCCCcccEEE
Q 005043 177 TFDTETECWSVVEAKGDIPVARSGHTVVRA-SSVLILFGGEDGKRRKLNDLHMFDLKSLTWLPLHCTGTGPSPRSNHVAA 255 (717)
Q Consensus 177 ~yD~~t~~W~~l~~~g~~P~~R~~hs~~~~-~~~Lyv~GG~~~~~~~~~~v~~yD~~t~~W~~l~~~g~~P~~R~~~aa~ 255 (717)
+||+.+.+-...-. .. ...-.+++.. ++.+++.|+.++ .+.+||+.+.+....-. ....+. ...++
T Consensus 133 iwd~~~~~~~~~~~---~~-~~~v~~~~~~~~~~~l~~~~~d~------~i~~wd~~~~~~~~~~~--~~~~~~-~~~~~ 199 (312)
T 4ery_A 133 IWDVKTGKCLKTLP---AH-SDPVSAVHFNRDGSLIVSSSYDG------LCRIWDTASGQCLKTLI--DDDNPP-VSFVK 199 (312)
T ss_dssp EEETTTCCEEEEEC---CC-SSCEEEEEECTTSSEEEEEETTS------CEEEEETTTCCEEEEEC--CSSCCC-EEEEE
T ss_pred EEECCCCEEEEEec---CC-CCcEEEEEEcCCCCEEEEEeCCC------cEEEEECCCCceeeEEe--ccCCCc-eEEEE
Confidence 99998776432211 01 1111122222 466777777543 48889998766433211 111111 12233
Q ss_pred EECCcEEEEEcCCCCCCCCCeEEEEECCCCcEEEeecCCCCCCCCcceEEEE-ECCEEEEEecCCCCCccCeEEEEECCC
Q 005043 256 LYDDKNLLIFGGSSKSKTLNDLYSLDFETMIWTRIKIRGFHPSPRAGCCGVL-CGTKWYIAGGGSRKKRHAETLIFDILK 334 (717)
Q Consensus 256 ~~~~~~lyV~GG~~~~~~~ndv~~yd~~t~~W~~v~~~g~~P~~R~~~sav~-~~~~IyV~GG~~~~~~~~dv~~yD~~t 334 (717)
...+..+++.|+.+ +.+..||+.+..-...-.. ............. .++.+++.|+.++. +.+||+.+
T Consensus 200 ~~~~~~~l~~~~~d-----~~i~iwd~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~l~sg~~dg~-----i~vwd~~~ 268 (312)
T 4ery_A 200 FSPNGKYILAATLD-----NTLKLWDYSKGKCLKTYTG-HKNEKYCIFANFSVTGGKWIVSGSEDNL-----VYIWNLQT 268 (312)
T ss_dssp ECTTSSEEEEEETT-----TEEEEEETTTTEEEEEECS-SCCSSSCCCEEEECSSSCEEEECCTTSC-----EEEEETTT
T ss_pred ECCCCCEEEEEcCC-----CeEEEEECCCCcEEEEEEe-cCCceEEEEEEEEeCCCcEEEEECCCCE-----EEEEECCC
Confidence 33333356666654 3599999987754332221 1111111112222 36777888876644 89999987
Q ss_pred CcEE
Q 005043 335 GEWS 338 (717)
Q Consensus 335 ~~W~ 338 (717)
..-.
T Consensus 269 ~~~~ 272 (312)
T 4ery_A 269 KEIV 272 (312)
T ss_dssp CCEE
T ss_pred chhh
Confidence 6533
No 39
>2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: b.68.4.1 c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A
Probab=97.30 E-value=0.023 Score=61.67 Aligned_cols=242 Identities=12% Similarity=0.081 Sum_probs=125.2
Q ss_pred CCEEEEEcccCCCCCcccEEEEEcCCCceEEccccccCCCCCCCCCCCcccceEEEE-ECCEEEEEeccCCCCCCceEEE
Q 005043 98 GNKMIVVGGESGNGLLDDVQVLNFDRFSWTAASSKLYLSPSSLPLKIPACRGHSLIS-WGKKVLLVGGKTDSGSDRVSVW 176 (717)
Q Consensus 98 ~~~lyV~GG~~~~~~~~~v~~yd~~t~~W~~l~~~~~~~~~~~~~~~p~r~~hs~v~-~~~~Iyv~GG~~~~~~~~~~v~ 176 (717)
+.++..++...+......++++|+....-..+... ... -.+.+. -+++.+++++.... ...++
T Consensus 143 ~~~l~~~s~~~~~~~~~~i~i~d~~g~~~~~l~~~------------~~~-v~~~~~Spdg~~la~~s~~~~---~~~i~ 206 (415)
T 2hqs_A 143 RTRIAYVVQTNGGQFPYELRVSDYDGYNQFVVHRS------------PQP-LMSPAWSPDGSKLAYVTFESG---RSALV 206 (415)
T ss_dssp TCEEEEEEECSSSSCCEEEEEEETTSCSCEEEEEE------------SSC-EEEEEECTTSSEEEEEECTTS---SCEEE
T ss_pred CCEEEEEEecCCCCccceEEEEcCCCCCCEEEeCC------------CCc-ceeeEEcCCCCEEEEEEecCC---CcEEE
Confidence 44544444332222235799999887655444331 011 112222 25555666664321 24799
Q ss_pred EEECCCCcEEEeeecCCCCCCceeeEEEEE-CCE-EEEEccccCCCCCcCcEEEEEcCCCceEeccCCCCCCCCCcccEE
Q 005043 177 TFDTETECWSVVEAKGDIPVARSGHTVVRA-SSV-LILFGGEDGKRRKLNDLHMFDLKSLTWLPLHCTGTGPSPRSNHVA 254 (717)
Q Consensus 177 ~yD~~t~~W~~l~~~g~~P~~R~~hs~~~~-~~~-Lyv~GG~~~~~~~~~~v~~yD~~t~~W~~l~~~g~~P~~R~~~aa 254 (717)
++|+.+++...+.. .+. ...+.+.. +++ |++.+..++ ...+++||+.+.+...+. ..+ ......
T Consensus 207 ~~d~~tg~~~~l~~---~~~--~~~~~~~spdg~~la~~~~~~g----~~~i~~~d~~~~~~~~l~---~~~--~~~~~~ 272 (415)
T 2hqs_A 207 IQTLANGAVRQVAS---FPR--HNGAPAFSPDGSKLAFALSKTG----SLNLYVMDLASGQIRQVT---DGR--SNNTEP 272 (415)
T ss_dssp EEETTTCCEEEEEC---CSS--CEEEEEECTTSSEEEEEECTTS----SCEEEEEETTTCCEEECC---CCS--SCEEEE
T ss_pred EEECCCCcEEEeec---CCC--cccCEEEcCCCCEEEEEEecCC----CceEEEEECCCCCEEeCc---CCC--Ccccce
Confidence 99999988776652 221 22233333 344 554544332 256999999988877664 111 112223
Q ss_pred EEE-CCcEEEEEcCCCCCCCCCeEEEEECCCCcEEEeecCCCCCCCCcceEEEE-ECCEEEEEecCCCCCccCeEEEEEC
Q 005043 255 ALY-DDKNLLIFGGSSKSKTLNDLYSLDFETMIWTRIKIRGFHPSPRAGCCGVL-CGTKWYIAGGGSRKKRHAETLIFDI 332 (717)
Q Consensus 255 ~~~-~~~~lyV~GG~~~~~~~ndv~~yd~~t~~W~~v~~~g~~P~~R~~~sav~-~~~~IyV~GG~~~~~~~~dv~~yD~ 332 (717)
+.. +++ .+++++... ....++.+|+.+..-..+... .....+.+. -+++.+++++.... ...++++|+
T Consensus 273 ~~spdg~-~l~~~s~~~--g~~~i~~~d~~~~~~~~l~~~-----~~~~~~~~~spdG~~l~~~~~~~g--~~~i~~~d~ 342 (415)
T 2hqs_A 273 TWFPDSQ-NLAFTSDQA--GRPQVYKVNINGGAPQRITWE-----GSQNQDADVSSDGKFMVMVSSNGG--QQHIAKQDL 342 (415)
T ss_dssp EECTTSS-EEEEEECTT--SSCEEEEEETTSSCCEECCCS-----SSEEEEEEECTTSSEEEEEEECSS--CEEEEEEET
T ss_pred EECCCCC-EEEEEECCC--CCcEEEEEECCCCCEEEEecC-----CCcccCeEECCCCCEEEEEECcCC--ceEEEEEEC
Confidence 333 445 344443221 124799999988775554321 122222222 25555555543321 247999999
Q ss_pred CCCcEEEeecCCCCCCCCCcceEEEEEEeCCCcEEEEEcCCCCCCCCeEEEEEccCCc
Q 005043 333 LKGEWSVAITSPSSSVTSNKGFTLVLVQHKEKDFLVAFGGIKKEPSNQVEVLSIEKNE 390 (717)
Q Consensus 333 ~t~~W~~l~~~p~~~~~~r~g~s~v~v~~~~~~~I~v~GG~~~~~~n~v~vyd~~~~e 390 (717)
.+.....+... . ....+.+.. ++..+++++.++. ...++++|+....
T Consensus 343 ~~~~~~~l~~~------~--~~~~~~~sp--dg~~l~~~s~~~~-~~~l~~~d~~g~~ 389 (415)
T 2hqs_A 343 ATGGVQVLSST------F--LDETPSLAP--NGTMVIYSSSQGM-GSVLNLVSTDGRF 389 (415)
T ss_dssp TTCCEEECCCS------S--SCEEEEECT--TSSEEEEEEEETT-EEEEEEEETTSCC
T ss_pred CCCCEEEecCC------C--CcCCeEEcC--CCCEEEEEEcCCC-ccEEEEEECCCCc
Confidence 99888665311 1 223334432 3334555554322 3378999987655
No 40
>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1
Probab=97.27 E-value=0.043 Score=59.41 Aligned_cols=230 Identities=12% Similarity=0.151 Sum_probs=123.6
Q ss_pred EEEECCEEEEEcccCCCCCcccEEEEEcCCCceEEccccccCCCCCCCCCCCcccceEEEEECCEEEEEeccCCCCCCce
Q 005043 94 AAVIGNKMIVVGGESGNGLLDDVQVLNFDRFSWTAASSKLYLSPSSLPLKIPACRGHSLISWGKKVLLVGGKTDSGSDRV 173 (717)
Q Consensus 94 av~~~~~lyV~GG~~~~~~~~~v~~yd~~t~~W~~l~~~~~~~~~~~~~~~p~r~~hs~v~~~~~Iyv~GG~~~~~~~~~ 173 (717)
+...++..++.|+.++ .+.+||..+..-...-. ... ..-.++.+++.+++.|+.++
T Consensus 138 ~~~~d~~~l~~g~~dg-----~i~iwd~~~~~~~~~~~------------~h~-~~v~~l~~~~~~l~sg~~dg------ 193 (435)
T 1p22_A 138 CLQYDDQKIVSGLRDN-----TIKIWDKNTLECKRILT------------GHT-GSVLCLQYDERVIITGSSDS------ 193 (435)
T ss_dssp EEECCSSEEEEEESSS-----CEEEEESSSCCEEEEEC------------CCS-SCEEEEECCSSEEEEEETTS------
T ss_pred EEEECCCEEEEEeCCC-----eEEEEeCCCCeEEEEEc------------CCC-CcEEEEEECCCEEEEEcCCC------
Confidence 3444777888887654 58899988765332211 001 11233344777888887642
Q ss_pred EEEEEECCCCcEEEeeecCCCCCCceeeEEEEECCEEEEEccccCCCCCcCcEEEEEcCCCceEeccCCCCCCCCCcccE
Q 005043 174 SVWTFDTETECWSVVEAKGDIPVARSGHTVVRASSVLILFGGEDGKRRKLNDLHMFDLKSLTWLPLHCTGTGPSPRSNHV 253 (717)
Q Consensus 174 ~v~~yD~~t~~W~~l~~~g~~P~~R~~hs~~~~~~~Lyv~GG~~~~~~~~~~v~~yD~~t~~W~~l~~~g~~P~~R~~~a 253 (717)
.+.+||+.++.....- ......-..+...+..++.||.++ .+.+||+.+..-..... ..........
T Consensus 194 ~i~vwd~~~~~~~~~~-----~~h~~~v~~l~~~~~~l~s~s~dg------~i~vwd~~~~~~~~~~~--~~~~~~~~v~ 260 (435)
T 1p22_A 194 TVRVWDVNTGEMLNTL-----IHHCEAVLHLRFNNGMMVTCSKDR------SIAVWDMASPTDITLRR--VLVGHRAAVN 260 (435)
T ss_dssp CEEEEESSSCCEEEEE-----CCCCSCEEEEECCTTEEEEEETTS------CEEEEECSSSSCCEEEE--EECCCSSCEE
T ss_pred eEEEEECCCCcEEEEE-----cCCCCcEEEEEEcCCEEEEeeCCC------cEEEEeCCCCCCceeee--EecCCCCcEE
Confidence 5889999887643322 111112223334555777776543 48888987654221100 0111111223
Q ss_pred EEEECCcEEEEEcCCCCCCCCCeEEEEECCCCcEEEeecCCCCCCCCcceEEEEECCEEEEEecCCCCCccCeEEEEECC
Q 005043 254 AALYDDKNLLIFGGSSKSKTLNDLYSLDFETMIWTRIKIRGFHPSPRAGCCGVLCGTKWYIAGGGSRKKRHAETLIFDIL 333 (717)
Q Consensus 254 a~~~~~~~lyV~GG~~~~~~~ndv~~yd~~t~~W~~v~~~g~~P~~R~~~sav~~~~~IyV~GG~~~~~~~~dv~~yD~~ 333 (717)
++.+++. .++.|+.++ .+.+||+.+..-...-.. ......++..++.+++.|+.++. +.+||+.
T Consensus 261 ~~~~~~~-~l~s~~~dg-----~i~vwd~~~~~~~~~~~~-----~~~~v~~~~~~~~~l~~g~~dg~-----i~iwd~~ 324 (435)
T 1p22_A 261 VVDFDDK-YIVSASGDR-----TIKVWNTSTCEFVRTLNG-----HKRGIACLQYRDRLVVSGSSDNT-----IRLWDIE 324 (435)
T ss_dssp EEEEETT-EEEEEETTS-----EEEEEETTTCCEEEEEEC-----CSSCEEEEEEETTEEEEEETTSC-----EEEEETT
T ss_pred EEEeCCC-EEEEEeCCC-----eEEEEECCcCcEEEEEcC-----CCCcEEEEEeCCCEEEEEeCCCe-----EEEEECC
Confidence 3444666 566666543 589999987654332211 11223334446777888876544 8999998
Q ss_pred CCcEEEeecCCCCCCCCCcceEEEEEEeCCCcEEEEEcCCCCCCCCeEEEEEccCCc
Q 005043 334 KGEWSVAITSPSSSVTSNKGFTLVLVQHKEKDFLVAFGGIKKEPSNQVEVLSIEKNE 390 (717)
Q Consensus 334 t~~W~~l~~~p~~~~~~r~g~s~v~v~~~~~~~I~v~GG~~~~~~n~v~vyd~~~~e 390 (717)
+..-.... ... .....++.+ ++..++.|+.++ .|.+||+.+..
T Consensus 325 ~~~~~~~~--~~h----~~~v~~~~~----~~~~l~sg~~dg----~i~vwd~~~~~ 367 (435)
T 1p22_A 325 CGACLRVL--EGH----EELVRCIRF----DNKRIVSGAYDG----KIKVWDLVAAL 367 (435)
T ss_dssp TCCEEEEE--CCC----SSCEEEEEC----CSSEEEEEETTS----CEEEEEHHHHT
T ss_pred CCCEEEEE--eCC----cCcEEEEEe----cCCEEEEEeCCC----cEEEEECCCCC
Confidence 76543322 111 111223333 344667777643 57888876544
No 41
>2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str}
Probab=97.27 E-value=0.051 Score=53.92 Aligned_cols=228 Identities=11% Similarity=0.031 Sum_probs=118.3
Q ss_pred cccEEEEEcCCCceEEccccccCCCCCCCCCCCcccceEEEE-ECCEEEEEeccCCCCCCceEEEEEECCC-CcEEEeee
Q 005043 113 LDDVQVLNFDRFSWTAASSKLYLSPSSLPLKIPACRGHSLIS-WGKKVLLVGGKTDSGSDRVSVWTFDTET-ECWSVVEA 190 (717)
Q Consensus 113 ~~~v~~yd~~t~~W~~l~~~~~~~~~~~~~~~p~r~~hs~v~-~~~~Iyv~GG~~~~~~~~~~v~~yD~~t-~~W~~l~~ 190 (717)
-..+++||+.+.....+... ... -.+++. -+++.+++++. ..+++||+.+ .....+..
T Consensus 21 ~~~i~~~d~~~~~~~~~~~~------------~~~-v~~~~~spdg~~l~~~~~-------~~i~~~d~~~~~~~~~~~~ 80 (297)
T 2ojh_A 21 RSSIEIFNIRTRKMRVVWQT------------PEL-FEAPNWSPDGKYLLLNSE-------GLLYRLSLAGDPSPEKVDT 80 (297)
T ss_dssp CEEEEEEETTTTEEEEEEEE------------SSC-CEEEEECTTSSEEEEEET-------TEEEEEESSSCCSCEECCC
T ss_pred ceeEEEEeCCCCceeeeccC------------Ccc-eEeeEECCCCCEEEEEcC-------CeEEEEeCCCCCCceEecc
Confidence 45799999999877655431 111 122222 25566666542 2699999998 77665542
Q ss_pred cCCCCCCceeeEEEE-ECCEEEEEccccCCCCCcCcEEEEEcCCCceEeccCCCCCCCCCcccEEEEE-CCcEEEEEcCC
Q 005043 191 KGDIPVARSGHTVVR-ASSVLILFGGEDGKRRKLNDLHMFDLKSLTWLPLHCTGTGPSPRSNHVAALY-DDKNLLIFGGS 268 (717)
Q Consensus 191 ~g~~P~~R~~hs~~~-~~~~Lyv~GG~~~~~~~~~~v~~yD~~t~~W~~l~~~g~~P~~R~~~aa~~~-~~~~lyV~GG~ 268 (717)
.+....-..++. -+++.+++++.... ....+|.+|..+.....+.. .. . ...+... +++.|++.++.
T Consensus 81 ---~~~~~~~~~~~~spdg~~l~~~~~~~~--~~~~l~~~~~~~~~~~~~~~---~~-~--~~~~~~spdg~~l~~~~~~ 149 (297)
T 2ojh_A 81 ---GFATICNNDHGISPDGALYAISDKVEF--GKSAIYLLPSTGGTPRLMTK---NL-P--SYWHGWSPDGKSFTYCGIR 149 (297)
T ss_dssp ---TTCCCBCSCCEECTTSSEEEEEECTTT--SSCEEEEEETTCCCCEECCS---SS-S--EEEEEECTTSSEEEEEEEE
T ss_pred ---ccccccccceEECCCCCEEEEEEeCCC--CcceEEEEECCCCceEEeec---CC-C--ccceEECCCCCEEEEEECC
Confidence 111111122223 35566666654332 24679999988777665541 11 1 2223333 44545544443
Q ss_pred CCCCCCCeEEEEECCCCcEEEeecCCCCCCCCcceEEEE-ECCE-EEEEecCCCCCccCeEEEEECCCCcEEEeecCCCC
Q 005043 269 SKSKTLNDLYSLDFETMIWTRIKIRGFHPSPRAGCCGVL-CGTK-WYIAGGGSRKKRHAETLIFDILKGEWSVAITSPSS 346 (717)
Q Consensus 269 ~~~~~~ndv~~yd~~t~~W~~v~~~g~~P~~R~~~sav~-~~~~-IyV~GG~~~~~~~~dv~~yD~~t~~W~~l~~~p~~ 346 (717)
++. -.+|.++..+.....+... ......++. -+++ |++.+..++ ...+|.+++.+.....+..
T Consensus 150 ~~~---~~l~~~~~~~~~~~~~~~~-----~~~~~~~~~s~dg~~l~~~~~~~~---~~~i~~~~~~~~~~~~~~~---- 214 (297)
T 2ojh_A 150 DQV---FDIYSMDIDSGVETRLTHG-----EGRNDGPDYSPDGRWIYFNSSRTG---QMQIWRVRVDGSSVERITD---- 214 (297)
T ss_dssp TTE---EEEEEEETTTCCEEECCCS-----SSCEEEEEECTTSSEEEEEECTTS---SCEEEEEETTSSCEEECCC----
T ss_pred CCc---eEEEEEECCCCcceEcccC-----CCccccceECCCCCEEEEEecCCC---CccEEEECCCCCCcEEEec----
Confidence 321 3578888888777665432 111122222 2454 444443332 3578888887777666531
Q ss_pred CCCCCcceEEEEEEeCCCcEEEEEcCCCCC-------CCCeEEEEEccCCcc
Q 005043 347 SVTSNKGFTLVLVQHKEKDFLVAFGGIKKE-------PSNQVEVLSIEKNES 391 (717)
Q Consensus 347 ~~~~r~g~s~v~v~~~~~~~I~v~GG~~~~-------~~n~v~vyd~~~~eW 391 (717)
.......+.+. +++..| ++++..+. ....+++||+.+.+.
T Consensus 215 ---~~~~~~~~~~s-~dg~~l-~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~ 261 (297)
T 2ojh_A 215 ---SAYGDWFPHPS-PSGDKV-VFVSYDADVFDHPRDLDVRVQLMDMDGGNV 261 (297)
T ss_dssp ---CSEEEEEEEEC-TTSSEE-EEEEEETTCCSCCSSEEEEEEEEETTSCSC
T ss_pred ---CCcccCCeEEC-CCCCEE-EEEEcCCCCCcccccCceEEEEEecCCCCc
Confidence 11122223332 233344 44443221 124689999887653
No 42
>2iwa_A Glutamine cyclotransferase; pyroglutamate, acyltransferase, glutaminyl CYCL N-terminal cyclisation; HET: NAG; 1.6A {Carica papaya} PDB: 2faw_A*
Probab=97.25 E-value=0.075 Score=54.55 Aligned_cols=201 Identities=8% Similarity=-0.028 Sum_probs=118.5
Q ss_pred eeEEEEEC-CEEEEEcccCCCCCcccEEEEEcCCCceEEccccccCCCCCCCCCCCcccceEEEEECCEEEEEeccCCCC
Q 005043 91 NHAAAVIG-NKMIVVGGESGNGLLDDVQVLNFDRFSWTAASSKLYLSPSSLPLKIPACRGHSLISWGKKVLLVGGKTDSG 169 (717)
Q Consensus 91 ~haav~~~-~~lyV~GG~~~~~~~~~v~~yd~~t~~W~~l~~~~~~~~~~~~~~~p~r~~hs~v~~~~~Iyv~GG~~~~~ 169 (717)
-++.++.+ +.||+..|..+ .+.+.++|+.+++=...-+. .+..++.+++..+++||+..-.
T Consensus 23 ~~Gl~~~~dg~Lyvstg~~~---~s~v~~iD~~tg~v~~~i~l-----------~~~~fgeGi~~~g~~lyv~t~~---- 84 (266)
T 2iwa_A 23 TQGLVYAENDTLFESTGLYG---RSSVRQVALQTGKVENIHKM-----------DDSYFGEGLTLLNEKLYQVVWL---- 84 (266)
T ss_dssp EEEEEECSTTEEEEEECSTT---TCEEEEEETTTCCEEEEEEC-----------CTTCCEEEEEEETTEEEEEETT----
T ss_pred cccEEEeCCCeEEEECCCCC---CCEEEEEECCCCCEEEEEec-----------CCCcceEEEEEeCCEEEEEEec----
Confidence 35666665 88999887432 24799999999875443321 1233456778889999999543
Q ss_pred CCceEEEEEECCCCcEE-EeeecCCCCCCceeeEEEEECCEEEEEccccCCCCCcCcEEEEEcCCCceEeccCCCCCCCC
Q 005043 170 SDRVSVWTFDTETECWS-VVEAKGDIPVARSGHTVVRASSVLILFGGEDGKRRKLNDLHMFDLKSLTWLPLHCTGTGPSP 248 (717)
Q Consensus 170 ~~~~~v~~yD~~t~~W~-~l~~~g~~P~~R~~hs~~~~~~~Lyv~GG~~~~~~~~~~v~~yD~~t~~W~~l~~~g~~P~~ 248 (717)
.+.+++||+.+.+-. .++. + +| .+.+++..++++|+.-| .+.++.+|+.+.+-...-..+..+.+
T Consensus 85 --~~~v~viD~~t~~v~~~i~~-g-~~---~g~glt~Dg~~l~vs~g-------s~~l~viD~~t~~v~~~I~Vg~~~~p 150 (266)
T 2iwa_A 85 --KNIGFIYDRRTLSNIKNFTH-Q-MK---DGWGLATDGKILYGSDG-------TSILYEIDPHTFKLIKKHNVKYNGHR 150 (266)
T ss_dssp --CSEEEEEETTTTEEEEEEEC-C-SS---SCCEEEECSSSEEEECS-------SSEEEEECTTTCCEEEEEECEETTEE
T ss_pred --CCEEEEEECCCCcEEEEEEC-C-CC---CeEEEEECCCEEEEECC-------CCeEEEEECCCCcEEEEEEECCCCcc
Confidence 247999999987533 3331 2 22 34556666778998743 36799999998764332111222222
Q ss_pred Cc-ccEEEEECCcEEEEEcCCCCCCCCCeEEEEECCCCcEEEeecCC-C--------CCCCCcceEEEEE--CCEEEEEe
Q 005043 249 RS-NHVAALYDDKNLLIFGGSSKSKTLNDLYSLDFETMIWTRIKIRG-F--------HPSPRAGCCGVLC--GTKWYIAG 316 (717)
Q Consensus 249 R~-~~aa~~~~~~~lyV~GG~~~~~~~ndv~~yd~~t~~W~~v~~~g-~--------~P~~R~~~sav~~--~~~IyV~G 316 (717)
.. -..+...++. +|+--.. .+.|.+.|+.+++-...-..+ . .|..-.-.+.+.. ++++||.|
T Consensus 151 ~~~~nele~~dg~-lyvn~~~-----~~~V~vID~~tg~V~~~I~~~g~~~~~~~~~~~~~~v~nGIa~~~~~~~lfVTg 224 (266)
T 2iwa_A 151 VIRLNELEYINGE-VWANIWQ-----TDCIARISAKDGTLLGWILLPNLRKKLIDEGFRDIDVLNGIAWDQENKRIFVTG 224 (266)
T ss_dssp CCCEEEEEEETTE-EEEEETT-----SSEEEEEETTTCCEEEEEECHHHHHHHHHTTCTTCCCEEEEEEETTTTEEEEEE
T ss_pred cccceeEEEECCE-EEEecCC-----CCeEEEEECCCCcEEEEEECCCcccccccccccccCceEEEEEcCCCCEEEEEC
Confidence 11 1123344554 7865322 368999999988643332211 0 0111122344444 56899999
Q ss_pred cCCCCCccCeEEEEECCC
Q 005043 317 GGSRKKRHAETLIFDILK 334 (717)
Q Consensus 317 G~~~~~~~~dv~~yD~~t 334 (717)
+.. +.+++.++..
T Consensus 225 k~~-----~~v~~i~l~~ 237 (266)
T 2iwa_A 225 KLW-----PKLFEIKLHL 237 (266)
T ss_dssp TTC-----SEEEEEEEEE
T ss_pred CCC-----CeEEEEEEec
Confidence 865 4477776644
No 43
>2iwa_A Glutamine cyclotransferase; pyroglutamate, acyltransferase, glutaminyl CYCL N-terminal cyclisation; HET: NAG; 1.6A {Carica papaya} PDB: 2faw_A*
Probab=97.24 E-value=0.12 Score=52.99 Aligned_cols=204 Identities=12% Similarity=-0.016 Sum_probs=119.3
Q ss_pred eEEEEEC-CEEEEEeccCCCCCCceEEEEEECCCCcEEEeeecCCCCCCceeeEEEEECCEEEEEccccCCCCCcCcEEE
Q 005043 150 HSLISWG-KKVLLVGGKTDSGSDRVSVWTFDTETECWSVVEAKGDIPVARSGHTVVRASSVLILFGGEDGKRRKLNDLHM 228 (717)
Q Consensus 150 hs~v~~~-~~Iyv~GG~~~~~~~~~~v~~yD~~t~~W~~l~~~g~~P~~R~~hs~~~~~~~Lyv~GG~~~~~~~~~~v~~ 228 (717)
++++..+ +.+|+..|... .+.+.++|+.+++-...-+ ++...++..++..++.||+..- ..+.+++
T Consensus 24 ~Gl~~~~dg~Lyvstg~~~----~s~v~~iD~~tg~v~~~i~---l~~~~fgeGi~~~g~~lyv~t~------~~~~v~v 90 (266)
T 2iwa_A 24 QGLVYAENDTLFESTGLYG----RSSVRQVALQTGKVENIHK---MDDSYFGEGLTLLNEKLYQVVW------LKNIGFI 90 (266)
T ss_dssp EEEEECSTTEEEEEECSTT----TCEEEEEETTTCCEEEEEE---CCTTCCEEEEEEETTEEEEEET------TCSEEEE
T ss_pred ccEEEeCCCeEEEECCCCC----CCEEEEEECCCCCEEEEEe---cCCCcceEEEEEeCCEEEEEEe------cCCEEEE
Confidence 6666665 89999877422 3479999999988554332 4444566778888999999943 2467999
Q ss_pred EEcCCCceEe-ccCCCCCCCCCcccEEEEECCcEEEEEcCCCCCCCCCeEEEEECCCCcEEEeecCCCCCCCCc-ceEEE
Q 005043 229 FDLKSLTWLP-LHCTGTGPSPRSNHVAALYDDKNLLIFGGSSKSKTLNDLYSLDFETMIWTRIKIRGFHPSPRA-GCCGV 306 (717)
Q Consensus 229 yD~~t~~W~~-l~~~g~~P~~R~~~aa~~~~~~~lyV~GG~~~~~~~ndv~~yd~~t~~W~~v~~~g~~P~~R~-~~sav 306 (717)
||+.+.+=.. ++ .+ .| .+...+ .+++.+|+.-| .+.++.+|+.+.+-..--..+..+.+.. -..+.
T Consensus 91 iD~~t~~v~~~i~-~g-~~---~g~glt-~Dg~~l~vs~g------s~~l~viD~~t~~v~~~I~Vg~~~~p~~~~nele 158 (266)
T 2iwa_A 91 YDRRTLSNIKNFT-HQ-MK---DGWGLA-TDGKILYGSDG------TSILYEIDPHTFKLIKKHNVKYNGHRVIRLNELE 158 (266)
T ss_dssp EETTTTEEEEEEE-CC-SS---SCCEEE-ECSSSEEEECS------SSEEEEECTTTCCEEEEEECEETTEECCCEEEEE
T ss_pred EECCCCcEEEEEE-CC-CC---CeEEEE-ECCCEEEEECC------CCeEEEEECCCCcEEEEEEECCCCcccccceeEE
Confidence 9998765322 22 12 22 233333 45666888754 3579999998866443322221122211 12333
Q ss_pred EECCEEEEEecCCCCCccCeEEEEECCCCcEEEeecCCC--------CCCCCCcceEEEEEEeCCCcEEEEEcCCCCCCC
Q 005043 307 LCGTKWYIAGGGSRKKRHAETLIFDILKGEWSVAITSPS--------SSVTSNKGFTLVLVQHKEKDFLVAFGGIKKEPS 378 (717)
Q Consensus 307 ~~~~~IyV~GG~~~~~~~~dv~~yD~~t~~W~~l~~~p~--------~~~~~r~g~s~v~v~~~~~~~I~v~GG~~~~~~ 378 (717)
..++++|+--.. .++|.+.|+.+.+-......+. ..+..-.-.+.+ + ..+++.+||.|+..
T Consensus 159 ~~dg~lyvn~~~-----~~~V~vID~~tg~V~~~I~~~g~~~~~~~~~~~~~~v~nGIa-~-~~~~~~lfVTgk~~---- 227 (266)
T 2iwa_A 159 YINGEVWANIWQ-----TDCIARISAKDGTLLGWILLPNLRKKLIDEGFRDIDVLNGIA-W-DQENKRIFVTGKLW---- 227 (266)
T ss_dssp EETTEEEEEETT-----SSEEEEEETTTCCEEEEEECHHHHHHHHHTTCTTCCCEEEEE-E-ETTTTEEEEEETTC----
T ss_pred EECCEEEEecCC-----CCeEEEEECCCCcEEEEEECCCcccccccccccccCceEEEE-E-cCCCCEEEEECCCC----
Confidence 448898876532 2579999999876433221110 000001112322 2 34567899998863
Q ss_pred CeEEEEEccCC
Q 005043 379 NQVEVLSIEKN 389 (717)
Q Consensus 379 n~v~vyd~~~~ 389 (717)
+.+++.++...
T Consensus 228 ~~v~~i~l~~~ 238 (266)
T 2iwa_A 228 PKLFEIKLHLV 238 (266)
T ss_dssp SEEEEEEEEEC
T ss_pred CeEEEEEEecc
Confidence 46677776554
No 44
>1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1
Probab=97.19 E-value=0.035 Score=56.84 Aligned_cols=261 Identities=11% Similarity=0.051 Sum_probs=120.7
Q ss_pred CEEEEEcccCCCCCcccEEEEEcC--CCceEEccccccCCCCCCCCCCCcccceEEEEE-C-CEEEEEeccCCCCCCceE
Q 005043 99 NKMIVVGGESGNGLLDDVQVLNFD--RFSWTAASSKLYLSPSSLPLKIPACRGHSLISW-G-KKVLLVGGKTDSGSDRVS 174 (717)
Q Consensus 99 ~~lyV~GG~~~~~~~~~v~~yd~~--t~~W~~l~~~~~~~~~~~~~~~p~r~~hs~v~~-~-~~Iyv~GG~~~~~~~~~~ 174 (717)
..||+.+..+ ..+.+|++. +..+..+.... .+. .-..++.. + +.||+.+... ..
T Consensus 50 ~~l~~~~~~~-----~~v~~~~~~~~~~~~~~~~~~~----------~~~-~~~~~~~s~dg~~l~~~~~~~------~~ 107 (343)
T 1ri6_A 50 RYLYVGVRPE-----FRVLAYRIAPDDGALTFAAESA----------LPG-SLTHISTDHQGQFVFVGSYNA------GN 107 (343)
T ss_dssp SEEEEEETTT-----TEEEEEEECTTTCCEEEEEEEE----------CSS-CCSEEEECTTSSEEEEEETTT------TE
T ss_pred CEEEEeecCC-----CeEEEEEecCCCCceeeccccc----------cCC-CCcEEEEcCCCCEEEEEecCC------Ce
Confidence 4466554422 357777776 77777654421 111 11223322 3 4466654321 25
Q ss_pred EEEEECCCC-cEEEeeecCCCCCCceeeEEEEE--CCEEEEEccccCCCCCcCcEEEEEcCC-CceEecc--CCCCCCCC
Q 005043 175 VWTFDTETE-CWSVVEAKGDIPVARSGHTVVRA--SSVLILFGGEDGKRRKLNDLHMFDLKS-LTWLPLH--CTGTGPSP 248 (717)
Q Consensus 175 v~~yD~~t~-~W~~l~~~g~~P~~R~~hs~~~~--~~~Lyv~GG~~~~~~~~~~v~~yD~~t-~~W~~l~--~~g~~P~~ 248 (717)
+.+||+... ....+.. .+.....+.++.. +..||+.+..+ +.+.+||+.+ .++..+. .. ..+..
T Consensus 108 i~~~d~~~~~~~~~~~~---~~~~~~~~~~~~s~dg~~l~~~~~~~------~~v~~~d~~~~~~~~~~~~~~~-~~~~~ 177 (343)
T 1ri6_A 108 VSVTRLEDGLPVGVVDV---VEGLDGCHSANISPDNRTLWVPALKQ------DRICLFTVSDDGHLVAQDPAEV-TTVEG 177 (343)
T ss_dssp EEEEEEETTEEEEEEEE---ECCCTTBCCCEECTTSSEEEEEEGGG------TEEEEEEECTTSCEEEEEEEEE-ECSTT
T ss_pred EEEEECCCCcccccccc---ccCCCCceEEEECCCCCEEEEecCCC------CEEEEEEecCCCceeeeccccc-ccCCC
Confidence 777777322 2222221 1111122333333 33677664222 4588999987 6554321 00 11111
Q ss_pred CcccEEEEE-CCcEEEEEcCCCCCCCCCeEEEEECC--CCcEEEeecCCCCCCC---CcceEEEEE---CCEEEEEecCC
Q 005043 249 RSNHVAALY-DDKNLLIFGGSSKSKTLNDLYSLDFE--TMIWTRIKIRGFHPSP---RAGCCGVLC---GTKWYIAGGGS 319 (717)
Q Consensus 249 R~~~aa~~~-~~~~lyV~GG~~~~~~~ndv~~yd~~--t~~W~~v~~~g~~P~~---R~~~sav~~---~~~IyV~GG~~ 319 (717)
..-..++.. +++.+|+.+..+ +.+.+||+. +..+..+......|.. ......+.+ +..+|+.+..+
T Consensus 178 ~~~~~~~~~pdg~~l~~~~~~~-----~~i~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~~s~dg~~l~v~~~~~ 252 (343)
T 1ri6_A 178 AGPRHMVFHPNEQYAYCVNELN-----SSVDVWELKDPHGNIECVQTLDMMPENFSDTRWAADIHITPDGRHLYACDRTA 252 (343)
T ss_dssp CCEEEEEECTTSSEEEEEETTT-----TEEEEEESSCTTSCCEEEEEEECSCTTCCSCCCEEEEEECTTSSEEEEEETTT
T ss_pred CCcceEEECCCCCEEEEEeCCC-----CEEEEEEecCCCCcEEEEeeccccCccccccCCccceEECCCCCEEEEEecCC
Confidence 111123333 344567665432 468899984 4555433221111221 112222333 34677666433
Q ss_pred CCCccCeEEEEECC--CCcEEEeecCCCCCCCCCcceEEEEEEeCCCcEEEEEcCCCCCCCCeEEEE--EccCCcccCcc
Q 005043 320 RKKRHAETLIFDIL--KGEWSVAITSPSSSVTSNKGFTLVLVQHKEKDFLVAFGGIKKEPSNQVEVL--SIEKNESSMGR 395 (717)
Q Consensus 320 ~~~~~~dv~~yD~~--t~~W~~l~~~p~~~~~~r~g~s~v~v~~~~~~~I~v~GG~~~~~~n~v~vy--d~~~~eW~~~w 395 (717)
..+.+||+. +.+++.+...+.... ...+.+. +++..||+.++.+ +.+.+| |+.+.++...
T Consensus 253 -----~~i~v~d~~~~~~~~~~~~~~~~~~~-----~~~~~~s-~dg~~l~~~~~~~----~~v~v~~~d~~~g~~~~~- 316 (343)
T 1ri6_A 253 -----SLITVFSVSEDGSVLSKEGFQPTETQ-----PRGFNVD-HSGKYLIAAGQKS----HHISVYEIVGEQGLLHEK- 316 (343)
T ss_dssp -----TEEEEEEECTTSCCEEEEEEEECSSS-----CCCEEEC-TTSSEEEEECTTT----CEEEEEEEETTTTEEEEE-
T ss_pred -----CEEEEEEEcCCCCceEEeeeecCCCc-----cceEEEC-CCCCEEEEecCCC----CeEEEEEEcCCCceeeEc-
Confidence 358888887 556666643322111 1122332 3345566655432 245555 6666665442
Q ss_pred ccccCCCCCcEEEEeeC
Q 005043 396 RSTPNAKGPGQLLFEKR 412 (717)
Q Consensus 396 ~~~~~~~~p~~~~fgG~ 412 (717)
...+.+..|..+.|...
T Consensus 317 ~~~~~g~~p~~i~~~~~ 333 (343)
T 1ri6_A 317 GRYAVGQGPMWVVVNAH 333 (343)
T ss_dssp EEEECSSSCCEEEEEEE
T ss_pred cccccCCCCeeEEEEcc
Confidence 23334466777777654
No 45
>3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A*
Probab=97.16 E-value=0.28 Score=50.31 Aligned_cols=202 Identities=8% Similarity=-0.013 Sum_probs=103.7
Q ss_pred CCEEEEEcccCCCCCcccEEEEEcCCCceEE-ccccccCCCCCCCCCCCcccceEEEEE--CCEEEEEeccCCCCCCceE
Q 005043 98 GNKMIVVGGESGNGLLDDVQVLNFDRFSWTA-ASSKLYLSPSSLPLKIPACRGHSLISW--GKKVLLVGGKTDSGSDRVS 174 (717)
Q Consensus 98 ~~~lyV~GG~~~~~~~~~v~~yd~~t~~W~~-l~~~~~~~~~~~~~~~p~r~~hs~v~~--~~~Iyv~GG~~~~~~~~~~ 174 (717)
++.+|+.++.+ +.+++||+.+.+-.. +.......+ ....+..-++++.. ++.+|+.+... ...
T Consensus 100 g~~l~v~~~~~-----~~v~~~d~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~s~dg~~l~~~~~~~-----~~~ 165 (353)
T 3vgz_A 100 TQTLWFGNTVN-----SAVTAIDAKTGEVKGRLVLDDRKRT----EEVRPLQPRELVADDATNTVYISGIGK-----ESV 165 (353)
T ss_dssp TTEEEEEETTT-----TEEEEEETTTCCEEEEEESCCCCCC----SSCCCCEEEEEEEETTTTEEEEEEESS-----SCE
T ss_pred CCEEEEEecCC-----CEEEEEeCCCCeeEEEEecCCCccc----cccCCCCCceEEECCCCCEEEEEecCC-----Cce
Confidence 35588876643 368999998875422 221100000 00001112333333 46677776321 236
Q ss_pred EEEEECCCCcEEEeeecCCCCCCceeeEEEEE--CCEEEEEccccCCCCCcCcEEEEEcCCCceEeccCCCCCCCCCccc
Q 005043 175 VWTFDTETECWSVVEAKGDIPVARSGHTVVRA--SSVLILFGGEDGKRRKLNDLHMFDLKSLTWLPLHCTGTGPSPRSNH 252 (717)
Q Consensus 175 v~~yD~~t~~W~~l~~~g~~P~~R~~hs~~~~--~~~Lyv~GG~~~~~~~~~~v~~yD~~t~~W~~l~~~g~~P~~R~~~ 252 (717)
+++||+.+.+-...-. . .....+.++.. ++.+|+... -+.+++||+.+.+-......+.........
T Consensus 166 i~~~d~~~~~~~~~~~---~-~~~~~~~~~~s~dg~~l~~~~~-------~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~ 234 (353)
T 3vgz_A 166 IWVVDGGNIKLKTAIQ---N-TGKMSTGLALDSEGKRLYTTNA-------DGELITIDTADNKILSRKKLLDDGKEHFFI 234 (353)
T ss_dssp EEEEETTTTEEEEEEC---C-CCTTCCCCEEETTTTEEEEECT-------TSEEEEEETTTTEEEEEEECCCSSSCCCEE
T ss_pred EEEEcCCCCceEEEec---C-CCCccceEEECCCCCEEEEEcC-------CCeEEEEECCCCeEEEEEEcCCCCCCcccc
Confidence 9999998876443321 0 11111223332 356777642 246889999887643322111111111122
Q ss_pred EEEEE-CCcEEEEEcCCCCCCCCCeEEEEECCCCcEEEeecCCCCCCCCcceEEEEE--CCEEEEEecCCCCCccCeEEE
Q 005043 253 VAALY-DDKNLLIFGGSSKSKTLNDLYSLDFETMIWTRIKIRGFHPSPRAGCCGVLC--GTKWYIAGGGSRKKRHAETLI 329 (717)
Q Consensus 253 aa~~~-~~~~lyV~GG~~~~~~~ndv~~yd~~t~~W~~v~~~g~~P~~R~~~sav~~--~~~IyV~GG~~~~~~~~dv~~ 329 (717)
.++.. +++.+|+.+.. .+.+++||+.+.+....... +.+ .+++.. ++.+|+.+..+ +.+.+
T Consensus 235 ~~~~s~dg~~l~~~~~~-----~~~v~~~d~~~~~~~~~~~~---~~~---~~~~~s~dg~~l~v~~~~~-----~~v~~ 298 (353)
T 3vgz_A 235 NISLDTARQRAFITDSK-----AAEVLVVDTRNGNILAKVAA---PES---LAVLFNPARNEAYVTHRQA-----GKVSV 298 (353)
T ss_dssp EEEEETTTTEEEEEESS-----SSEEEEEETTTCCEEEEEEC---SSC---CCEEEETTTTEEEEEETTT-----TEEEE
T ss_pred eEEECCCCCEEEEEeCC-----CCEEEEEECCCCcEEEEEEc---CCC---ceEEECCCCCEEEEEECCC-----CeEEE
Confidence 23333 45556665532 25799999988876554433 222 122222 45688876543 46999
Q ss_pred EECCCCcEEEe
Q 005043 330 FDILKGEWSVA 340 (717)
Q Consensus 330 yD~~t~~W~~l 340 (717)
||+.+.+....
T Consensus 299 ~d~~~~~~~~~ 309 (353)
T 3vgz_A 299 IDAKSYKVVKT 309 (353)
T ss_dssp EETTTTEEEEE
T ss_pred EECCCCeEEEE
Confidence 99988776543
No 46
>4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=97.13 E-value=0.073 Score=56.85 Aligned_cols=222 Identities=15% Similarity=0.096 Sum_probs=113.7
Q ss_pred cEEEEEcCCCceEEccccccCCCCCCCCCCCcccceEEEEE-CCEEEEEeccCCCCCCceEEEEEECCCCcEEEeeecCC
Q 005043 115 DVQVLNFDRFSWTAASSKLYLSPSSLPLKIPACRGHSLISW-GKKVLLVGGKTDSGSDRVSVWTFDTETECWSVVEAKGD 193 (717)
Q Consensus 115 ~v~~yd~~t~~W~~l~~~~~~~~~~~~~~~p~r~~hs~v~~-~~~Iyv~GG~~~~~~~~~~v~~yD~~t~~W~~l~~~g~ 193 (717)
.+.+||..+......... . ....-.+++.. ++.+++.|+.++ .+.+||+.+......-.
T Consensus 114 ~v~lw~~~~~~~~~~~~~----------~-~~~~v~~v~~s~~~~~l~~~~~dg------~i~iwd~~~~~~~~~~~--- 173 (401)
T 4aez_A 114 NVYVWNADSGSVSALAET----------D-ESTYVASVKWSHDGSFLSVGLGNG------LVDIYDVESQTKLRTMA--- 173 (401)
T ss_dssp EEEEEETTTCCEEEEEEC----------C-TTCCEEEEEECTTSSEEEEEETTS------CEEEEETTTCCEEEEEC---
T ss_pred eEEEeeCCCCcEeEeeec----------C-CCCCEEEEEECCCCCEEEEECCCC------eEEEEECcCCeEEEEec---
Confidence 589999998876655431 1 11111222222 566777777532 58899998876443321
Q ss_pred CCCCceeeEEEEECCEEEEEccccCCCCCcCcEEEEEcCCCceEeccCCCCCCCCCcccEEEEECCcEEEEEcCCCCCCC
Q 005043 194 IPVARSGHTVVRASSVLILFGGEDGKRRKLNDLHMFDLKSLTWLPLHCTGTGPSPRSNHVAALYDDKNLLIFGGSSKSKT 273 (717)
Q Consensus 194 ~P~~R~~hs~~~~~~~Lyv~GG~~~~~~~~~~v~~yD~~t~~W~~l~~~g~~P~~R~~~aa~~~~~~~lyV~GG~~~~~~ 273 (717)
... .....+..++.+++.|+.+ ..+.+||+.+..-...... . ....-.++....+..+++.|+.++
T Consensus 174 -~~~-~~v~~~~~~~~~l~~~~~d------g~i~i~d~~~~~~~~~~~~-~--~~~~v~~~~~~~~~~~l~s~~~d~--- 239 (401)
T 4aez_A 174 -GHQ-ARVGCLSWNRHVLSSGSRS------GAIHHHDVRIANHQIGTLQ-G--HSSEVCGLAWRSDGLQLASGGNDN--- 239 (401)
T ss_dssp -CCS-SCEEEEEEETTEEEEEETT------SEEEEEETTSSSCEEEEEE-C--CSSCEEEEEECTTSSEEEEEETTS---
T ss_pred -CCC-CceEEEEECCCEEEEEcCC------CCEEEEecccCcceeeEEc-C--CCCCeeEEEEcCCCCEEEEEeCCC---
Confidence 111 1122223356677777654 3588899874321111100 1 111122333343433677777654
Q ss_pred CCeEEEEECCCCcEEEeecCCCCCCCCcceEEEEE--CCEEEEEecCCCCCccCeEEEEECCCCcEEEeecCCCCCCCCC
Q 005043 274 LNDLYSLDFETMIWTRIKIRGFHPSPRAGCCGVLC--GTKWYIAGGGSRKKRHAETLIFDILKGEWSVAITSPSSSVTSN 351 (717)
Q Consensus 274 ~ndv~~yd~~t~~W~~v~~~g~~P~~R~~~sav~~--~~~IyV~GG~~~~~~~~dv~~yD~~t~~W~~l~~~p~~~~~~r 351 (717)
.|.+||+.+..-...-. .....-.+++.. +..+++.||.+.+ ..+.+||+.+......... .
T Consensus 240 --~v~iwd~~~~~~~~~~~----~~~~~v~~~~~~p~~~~ll~~~~gs~d---~~i~i~d~~~~~~~~~~~~-------~ 303 (401)
T 4aez_A 240 --VVQIWDARSSIPKFTKT----NHNAAVKAVAWCPWQSNLLATGGGTMD---KQIHFWNAATGARVNTVDA-------G 303 (401)
T ss_dssp --CEEEEETTCSSEEEEEC----CCSSCCCEEEECTTSTTEEEEECCTTT---CEEEEEETTTCCEEEEEEC-------S
T ss_pred --eEEEccCCCCCccEEec----CCcceEEEEEECCCCCCEEEEecCCCC---CEEEEEECCCCCEEEEEeC-------C
Confidence 49999998755432221 111122233333 4567777752221 3589999987764443211 1
Q ss_pred cceEEEEEEeCCCcEEEEEcCCCCCCCCeEEEEEccCCc
Q 005043 352 KGFTLVLVQHKEKDFLVAFGGIKKEPSNQVEVLSIEKNE 390 (717)
Q Consensus 352 ~g~s~v~v~~~~~~~I~v~GG~~~~~~n~v~vyd~~~~e 390 (717)
.....+.+. +++..+++.+|.... .+.+||+.+.+
T Consensus 304 ~~v~~~~~s-~~~~~l~~~~g~~dg---~i~v~~~~~~~ 338 (401)
T 4aez_A 304 SQVTSLIWS-PHSKEIMSTHGFPDN---NLSIWSYSSSG 338 (401)
T ss_dssp SCEEEEEEC-SSSSEEEEEECTTTC---EEEEEEEETTE
T ss_pred CcEEEEEEC-CCCCeEEEEeecCCC---cEEEEecCCcc
Confidence 123333332 344556555554332 68888887754
No 47
>3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens}
Probab=97.12 E-value=0.1 Score=54.13 Aligned_cols=189 Identities=12% Similarity=0.014 Sum_probs=99.1
Q ss_pred CCEEEEEeccCCCCCCceEEEEEECCCCcEEEeeecCCCCCCceeeEEEE-ECCEEEEEccccCCCCCcCcEEEEEcCCC
Q 005043 156 GKKVLLVGGKTDSGSDRVSVWTFDTETECWSVVEAKGDIPVARSGHTVVR-ASSVLILFGGEDGKRRKLNDLHMFDLKSL 234 (717)
Q Consensus 156 ~~~Iyv~GG~~~~~~~~~~v~~yD~~t~~W~~l~~~g~~P~~R~~hs~~~-~~~~Lyv~GG~~~~~~~~~~v~~yD~~t~ 234 (717)
++.+++.|+.+ ..+.+||+.+.+-...-.. .+.. ..+++. -++..++.|+.+ ..+.+||..+.
T Consensus 91 ~~~~l~s~s~D------~~i~lWd~~~~~~~~~~~~--~~~~--~~~~~~spdg~~l~~g~~d------g~v~i~~~~~~ 154 (321)
T 3ow8_A 91 TLPIAASSSLD------AHIRLWDLENGKQIKSIDA--GPVD--AWTLAFSPDSQYLATGTHV------GKVNIFGVESG 154 (321)
T ss_dssp SSSEEEEEETT------SEEEEEETTTTEEEEEEEC--CTTC--CCCEEECTTSSEEEEECTT------SEEEEEETTTC
T ss_pred CCCEEEEEeCC------CcEEEEECCCCCEEEEEeC--CCcc--EEEEEECCCCCEEEEEcCC------CcEEEEEcCCC
Confidence 45567777754 2688999988764332211 1111 112333 245677777643 34788888766
Q ss_pred ceEeccCCCCCCCCCcccEEEEECCcEEEEEcCCCCCCCCCeEEEEECCCCcEEEeecCCCCCCCCcceEEEE-ECCEEE
Q 005043 235 TWLPLHCTGTGPSPRSNHVAALYDDKNLLIFGGSSKSKTLNDLYSLDFETMIWTRIKIRGFHPSPRAGCCGVL-CGTKWY 313 (717)
Q Consensus 235 ~W~~l~~~g~~P~~R~~~aa~~~~~~~lyV~GG~~~~~~~ndv~~yd~~t~~W~~v~~~g~~P~~R~~~sav~-~~~~Iy 313 (717)
.-...- . .....-.+++...+..+++.|+.++ .+.+||+.++.-...-.. ....-.+++. -+++++
T Consensus 155 ~~~~~~---~-~~~~~v~~~~~spdg~~lasg~~dg-----~i~iwd~~~~~~~~~~~~----h~~~v~~l~~spd~~~l 221 (321)
T 3ow8_A 155 KKEYSL---D-TRGKFILSIAYSPDGKYLASGAIDG-----IINIFDIATGKLLHTLEG----HAMPIRSLTFSPDSQLL 221 (321)
T ss_dssp SEEEEE---E-CSSSCEEEEEECTTSSEEEEEETTS-----CEEEEETTTTEEEEEECC----CSSCCCEEEECTTSCEE
T ss_pred ceeEEe---c-CCCceEEEEEECCCCCEEEEEcCCC-----eEEEEECCCCcEEEEEcc----cCCceeEEEEcCCCCEE
Confidence 533211 0 0111222333434433677777654 489999988754332111 1111112222 267788
Q ss_pred EEecCCCCCccCeEEEEECCCCcEEEeecCCCCCCCCCcceEEEEEEeCCCcEEEEEcCCCCCCCCeEEEEEccCCc
Q 005043 314 IAGGGSRKKRHAETLIFDILKGEWSVAITSPSSSVTSNKGFTLVLVQHKEKDFLVAFGGIKKEPSNQVEVLSIEKNE 390 (717)
Q Consensus 314 V~GG~~~~~~~~dv~~yD~~t~~W~~l~~~p~~~~~~r~g~s~v~v~~~~~~~I~v~GG~~~~~~n~v~vyd~~~~e 390 (717)
+.|+.++. +.+||+.+....... ... ......+.+.. ++.+++.|+.++ .|.+||+.+.+
T Consensus 222 ~s~s~dg~-----i~iwd~~~~~~~~~~--~~h----~~~v~~~~~sp--~~~~l~s~s~D~----~v~iwd~~~~~ 281 (321)
T 3ow8_A 222 VTASDDGY-----IKIYDVQHANLAGTL--SGH----ASWVLNVAFCP--DDTHFVSSSSDK----SVKVWDVGTRT 281 (321)
T ss_dssp EEECTTSC-----EEEEETTTCCEEEEE--CCC----SSCEEEEEECT--TSSEEEEEETTS----CEEEEETTTTE
T ss_pred EEEcCCCe-----EEEEECCCcceeEEE--cCC----CCceEEEEECC--CCCEEEEEeCCC----cEEEEeCCCCE
Confidence 88886644 889999876654322 111 11122333322 344666777643 57888887654
No 48
>1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C
Probab=97.12 E-value=0.055 Score=56.21 Aligned_cols=240 Identities=11% Similarity=0.064 Sum_probs=120.3
Q ss_pred CCEEEEEcccCCCCCcccEEEEEcCCCceEEccccccCCCCCCCCCCCcccceEEEEE-CCEEEEEeccCCCCCCceEEE
Q 005043 98 GNKMIVVGGESGNGLLDDVQVLNFDRFSWTAASSKLYLSPSSLPLKIPACRGHSLISW-GKKVLLVGGKTDSGSDRVSVW 176 (717)
Q Consensus 98 ~~~lyV~GG~~~~~~~~~v~~yd~~t~~W~~l~~~~~~~~~~~~~~~p~r~~hs~v~~-~~~Iyv~GG~~~~~~~~~~v~ 176 (717)
+++++++|+.+ ..+.+||+.+..|..+... ......-.+++.. ++.+++.|+.+. .+.
T Consensus 19 ~~~~l~~~~~d-----~~v~i~~~~~~~~~~~~~~----------~~h~~~v~~~~~~~~~~~l~~~~~dg------~i~ 77 (372)
T 1k8k_C 19 DRTQIAICPNN-----HEVHIYEKSGNKWVQVHEL----------KEHNGQVTGVDWAPDSNRIVTCGTDR------NAY 77 (372)
T ss_dssp TSSEEEEECSS-----SEEEEEEEETTEEEEEEEE----------ECCSSCEEEEEEETTTTEEEEEETTS------CEE
T ss_pred CCCEEEEEeCC-----CEEEEEeCCCCcEEeeeee----------cCCCCcccEEEEeCCCCEEEEEcCCC------eEE
Confidence 45567777654 3689999999877665542 1111112233333 566777777532 488
Q ss_pred EEECCCCcEEEeeecCCCCCCceeeEEEEE-CCEEEEEccccCCCCCcCcEEEEEcCCCc-eEeccCCCCCCCCCcccEE
Q 005043 177 TFDTETECWSVVEAKGDIPVARSGHTVVRA-SSVLILFGGEDGKRRKLNDLHMFDLKSLT-WLPLHCTGTGPSPRSNHVA 254 (717)
Q Consensus 177 ~yD~~t~~W~~l~~~g~~P~~R~~hs~~~~-~~~Lyv~GG~~~~~~~~~~v~~yD~~t~~-W~~l~~~g~~P~~R~~~aa 254 (717)
+||+.+..+...... ......-.++... ++.+++.|+.++ .+.+||+.+.. |...... ..+....-.++
T Consensus 78 vwd~~~~~~~~~~~~--~~~~~~v~~~~~~~~~~~l~~~~~d~------~v~i~d~~~~~~~~~~~~~-~~~~~~~i~~~ 148 (372)
T 1k8k_C 78 VWTLKGRTWKPTLVI--LRINRAARCVRWAPNEKKFAVGSGSR------VISICYFEQENDWWVCKHI-KKPIRSTVLSL 148 (372)
T ss_dssp EEEEETTEEEEEEEC--CCCSSCEEEEEECTTSSEEEEEETTS------SEEEEEEETTTTEEEEEEE-CTTCCSCEEEE
T ss_pred EEECCCCeeeeeEEe--ecCCCceeEEEECCCCCEEEEEeCCC------EEEEEEecCCCcceeeeee-ecccCCCeeEE
Confidence 888888887655421 1112222233332 466777776543 36677766544 3322110 11112222333
Q ss_pred EEECCcEEEEEcCCCCCCCCCeEEEEECCCC----------------cEEEeecCCCCCCCCcceEEEEE--CCEEEEEe
Q 005043 255 ALYDDKNLLIFGGSSKSKTLNDLYSLDFETM----------------IWTRIKIRGFHPSPRAGCCGVLC--GTKWYIAG 316 (717)
Q Consensus 255 ~~~~~~~lyV~GG~~~~~~~ndv~~yd~~t~----------------~W~~v~~~g~~P~~R~~~sav~~--~~~IyV~G 316 (717)
+...+..+++.|+.++ .+..||+... .-..+... .........+.+ ++..++.|
T Consensus 149 ~~~~~~~~l~~~~~dg-----~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~v~~~~~~~~~~~l~~~ 220 (372)
T 1k8k_C 149 DWHPNSVLLAAGSCDF-----KCRIFSAYIKEVEERPAPTPWGSKMPFGELMFES---SSSCGWVHGVCFSANGSRVAWV 220 (372)
T ss_dssp EECTTSSEEEEEETTS-----CEEEEECCCTTTSCCCCCBTTBSCCCTTCEEEEC---CCCSSCEEEEEECSSSSEEEEE
T ss_pred EEcCCCCEEEEEcCCC-----CEEEEEcccccccccccccccccccchhhheEec---CCCCCeEEEEEECCCCCEEEEE
Confidence 4443433677777653 4888985421 11111111 111111222223 56677777
Q ss_pred cCCCCCccCeEEEEECCCCcEEEeecCCCCCCCCCcceEEEEEEeCCCcEEEEEcCCCCCCCCeEEEEEccC--CcccC
Q 005043 317 GGSRKKRHAETLIFDILKGEWSVAITSPSSSVTSNKGFTLVLVQHKEKDFLVAFGGIKKEPSNQVEVLSIEK--NESSM 393 (717)
Q Consensus 317 G~~~~~~~~dv~~yD~~t~~W~~l~~~p~~~~~~r~g~s~v~v~~~~~~~I~v~GG~~~~~~n~v~vyd~~~--~eW~~ 393 (717)
+.++ .+.+||+.+.+-...... .......+.+.. ++.+++.| .++ .+.+|++.. .+|..
T Consensus 221 ~~d~-----~i~i~d~~~~~~~~~~~~------~~~~v~~~~~~~--~~~~l~~~-~d~----~i~i~~~~~~~~~~~~ 281 (372)
T 1k8k_C 221 SHDS-----TVCLADADKKMAVATLAS------ETLPLLAVTFIT--ESSLVAAG-HDC----FPVLFTYDSAAGKLSF 281 (372)
T ss_dssp ETTT-----EEEEEEGGGTTEEEEEEC------SSCCEEEEEEEE--TTEEEEEE-TTS----SCEEEEEETTTTEEEE
T ss_pred eCCC-----EEEEEECCCCceeEEEcc------CCCCeEEEEEec--CCCEEEEE-eCC----eEEEEEccCcCceEEE
Confidence 7543 489999987654332211 111223334433 44555555 332 567888877 77644
No 49
>3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans}
Probab=97.10 E-value=0.27 Score=49.85 Aligned_cols=254 Identities=7% Similarity=-0.045 Sum_probs=132.0
Q ss_pred CCCCeEEeeecCCCCCCcceeEEEEE--CCEEEEEcccCCCCCcccEEEEEcCCCceEEccccccCCCCCCCCCCCcccc
Q 005043 72 NSENWMVLSIAGDKPIPRFNHAAAVI--GNKMIVVGGESGNGLLDDVQVLNFDRFSWTAASSKLYLSPSSLPLKIPACRG 149 (717)
Q Consensus 72 ~s~~W~~l~~~g~~P~~R~~haav~~--~~~lyV~GG~~~~~~~~~v~~yd~~t~~W~~l~~~~~~~~~~~~~~~p~r~~ 149 (717)
....+..+... .....+.+.. ++.||+++... ..+++||+.+. ...+... ...-
T Consensus 16 ~~~~~~~l~~~-----~~~~eg~~~d~~g~~l~~~~~~~-----~~i~~~~~~~~-~~~~~~~-------------~~~~ 71 (296)
T 3e5z_A 16 AGAEARRLADG-----FTWTEGPVYVPARSAVIFSDVRQ-----NRTWAWSDDGQ-LSPEMHP-------------SHHQ 71 (296)
T ss_dssp TTCCCEEEECC-----CSSEEEEEEEGGGTEEEEEEGGG-----TEEEEEETTSC-EEEEESS-------------CSSE
T ss_pred CCCcEEEEecC-----CccccCCeEeCCCCEEEEEeCCC-----CEEEEEECCCC-eEEEECC-------------CCCc
Confidence 45566666521 2333444444 34588887643 36899999987 5554321 1112
Q ss_pred eEEEEE-CCEEEEEeccCCCCCCceEEEEEECCCCcEEEeeec-CCCCCCceeeEEEEECCEEEEE----ccccC-----
Q 005043 150 HSLISW-GKKVLLVGGKTDSGSDRVSVWTFDTETECWSVVEAK-GDIPVARSGHTVVRASSVLILF----GGEDG----- 218 (717)
Q Consensus 150 hs~v~~-~~~Iyv~GG~~~~~~~~~~v~~yD~~t~~W~~l~~~-g~~P~~R~~hs~~~~~~~Lyv~----GG~~~----- 218 (717)
.+++.. ++++|+.... ...+++||+.+++...+... ...+..+....++.-++.||+. |....
T Consensus 72 ~~l~~~~dg~l~v~~~~------~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~i~~d~~G~l~vtd~~~g~~~~~~~~~ 145 (296)
T 3e5z_A 72 NGHCLNKQGHLIACSHG------LRRLERQREPGGEWESIADSFEGKKLNSPNDVCLAPDGSLWFSDPTYGIDKPEEGYG 145 (296)
T ss_dssp EEEEECTTCCEEEEETT------TTEEEEECSTTCCEEEEECEETTEECCCCCCEEECTTSCEEEEECSHHHHCGGGSSC
T ss_pred ceeeECCCCcEEEEecC------CCeEEEEcCCCCcEEEEeeccCCCCCCCCCCEEECCCCCEEEECCcccccccccccc
Confidence 344443 5678776432 13699999988887766421 0111111122222235788886 43210
Q ss_pred --CCCCcCcEEEEEcCCCceEeccCCCCCCCCCcccEEEEE-CCcEEEEEcCCCCCCCCCeEEEEECC-CCcE-EEeecC
Q 005043 219 --KRRKLNDLHMFDLKSLTWLPLHCTGTGPSPRSNHVAALY-DDKNLLIFGGSSKSKTLNDLYSLDFE-TMIW-TRIKIR 293 (717)
Q Consensus 219 --~~~~~~~v~~yD~~t~~W~~l~~~g~~P~~R~~~aa~~~-~~~~lyV~GG~~~~~~~ndv~~yd~~-t~~W-~~v~~~ 293 (717)
.......+++||+. .+...+.. ....+ ...+.. +++ +++.+... +.+++||+. ++.. ......
T Consensus 146 ~~~~~~~~~l~~~~~~-g~~~~~~~--~~~~~---~gi~~s~dg~-~lv~~~~~-----~~i~~~~~~~~g~~~~~~~~~ 213 (296)
T 3e5z_A 146 GEMELPGRWVFRLAPD-GTLSAPIR--DRVKP---NGLAFLPSGN-LLVSDTGD-----NATHRYCLNARGETEYQGVHF 213 (296)
T ss_dssp CCCCSSSCEEEEECTT-SCEEEEEC--CCSSE---EEEEECTTSC-EEEEETTT-----TEEEEEEECSSSCEEEEEEEE
T ss_pred ccccCCCcEEEEECCC-CCEEEeec--CCCCC---ccEEECCCCC-EEEEeCCC-----CeEEEEEECCCCcCcCCCeEe
Confidence 01113579999987 55554431 11111 233333 344 44544322 469999986 5555 211111
Q ss_pred CCCCCCCcceEEEE-ECCEEEEEecCCCCCccCeEEEEECCCCcEEEeecCCCCCCCCCcceEEEEEEeCCCcEEEEEcC
Q 005043 294 GFHPSPRAGCCGVL-CGTKWYIAGGGSRKKRHAETLIFDILKGEWSVAITSPSSSVTSNKGFTLVLVQHKEKDFLVAFGG 372 (717)
Q Consensus 294 g~~P~~R~~~sav~-~~~~IyV~GG~~~~~~~~dv~~yD~~t~~W~~l~~~p~~~~~~r~g~s~v~v~~~~~~~I~v~GG 372 (717)
....... .+++. -+++|||..+ ..|.+||+.......+.. +. . ...+++..+++..||+...
T Consensus 214 -~~~~~~p-~~i~~d~~G~l~v~~~-------~~v~~~~~~g~~~~~~~~-~~----~---~~~~~f~~~d~~~L~v~t~ 276 (296)
T 3e5z_A 214 -TVEPGKT-DGLRVDAGGLIWASAG-------DGVHVLTPDGDELGRVLT-PQ----T---TSNLCFGGPEGRTLYMTVS 276 (296)
T ss_dssp -CCSSSCC-CSEEEBTTSCEEEEET-------TEEEEECTTSCEEEEEEC-SS----C---CCEEEEESTTSCEEEEEET
T ss_pred -eCCCCCC-CeEEECCCCCEEEEcC-------CeEEEECCCCCEEEEEEC-CC----C---ceeEEEECCCCCEEEEEcC
Confidence 0111111 12333 3678888772 359999998665555541 11 1 2233343334456776553
Q ss_pred CCCCCCCeEEEEEccCCc
Q 005043 373 IKKEPSNQVEVLSIEKNE 390 (717)
Q Consensus 373 ~~~~~~n~v~vyd~~~~e 390 (717)
+.++.|++.+.+
T Consensus 277 ------~~l~~~~~~~~~ 288 (296)
T 3e5z_A 277 ------TEFWSIETNVRG 288 (296)
T ss_dssp ------TEEEEEECSCCB
T ss_pred ------CeEEEEEccccc
Confidence 278999988775
No 50
>1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A
Probab=97.02 E-value=0.13 Score=52.31 Aligned_cols=234 Identities=14% Similarity=0.067 Sum_probs=117.5
Q ss_pred CCEEEEEcccCCCCCcccEEEEEcCCCceEEccccccCCCCCCCCCCCcccceEEEEE-CCEEEEEeccCCCCCCceEEE
Q 005043 98 GNKMIVVGGESGNGLLDDVQVLNFDRFSWTAASSKLYLSPSSLPLKIPACRGHSLISW-GKKVLLVGGKTDSGSDRVSVW 176 (717)
Q Consensus 98 ~~~lyV~GG~~~~~~~~~v~~yd~~t~~W~~l~~~~~~~~~~~~~~~p~r~~hs~v~~-~~~Iyv~GG~~~~~~~~~~v~ 176 (717)
++++++.|+ + ..+.+||+.+........... .......-.+++.. ++..++.|+.+ ..+.
T Consensus 62 ~~~~l~~~~-d-----g~i~iw~~~~~~~~~~~~~~~-------~~~~~~~v~~~~~~~~~~~l~~~~~d------~~i~ 122 (337)
T 1gxr_A 62 PTRHVYTGG-K-----GCVKVWDISHPGNKSPVSQLD-------CLNRDNYIRSCKLLPDGCTLIVGGEA------STLS 122 (337)
T ss_dssp SSSEEEEEC-B-----SEEEEEETTSTTCCSCSEEEE-------CSCTTSBEEEEEECTTSSEEEEEESS------SEEE
T ss_pred CCcEEEEcC-C-----CeEEEEECCCCCceeeeeccc-------ccCCCCcEEEEEEcCCCCEEEEEcCC------CcEE
Confidence 455666666 3 268889987753211110000 00011111222222 45666777653 2689
Q ss_pred EEECCCCcEEEeeecCCCCCCceeeEEEEE-CCEEEEEccccCCCCCcCcEEEEEcCCCceEeccCCCCCCCCCcccEEE
Q 005043 177 TFDTETECWSVVEAKGDIPVARSGHTVVRA-SSVLILFGGEDGKRRKLNDLHMFDLKSLTWLPLHCTGTGPSPRSNHVAA 255 (717)
Q Consensus 177 ~yD~~t~~W~~l~~~g~~P~~R~~hs~~~~-~~~Lyv~GG~~~~~~~~~~v~~yD~~t~~W~~l~~~g~~P~~R~~~aa~ 255 (717)
+||+.+..+....... .....-.+++.. ++.+++.|+.+ ..+.+||+.+.+....- ... ...-.+++
T Consensus 123 ~~d~~~~~~~~~~~~~--~~~~~i~~~~~~~~~~~l~~~~~d------g~v~~~d~~~~~~~~~~---~~~-~~~i~~~~ 190 (337)
T 1gxr_A 123 IWDLAAPTPRIKAELT--SSAPACYALAISPDSKVCFSCCSD------GNIAVWDLHNQTLVRQF---QGH-TDGASCID 190 (337)
T ss_dssp EEECCCC--EEEEEEE--CSSSCEEEEEECTTSSEEEEEETT------SCEEEEETTTTEEEEEE---CCC-SSCEEEEE
T ss_pred EEECCCCCcceeeecc--cCCCceEEEEECCCCCEEEEEeCC------CcEEEEeCCCCceeeee---ecc-cCceEEEE
Confidence 9999888754333210 111112233333 45677777654 34889999877644321 111 11122333
Q ss_pred EECCcEEEEEcCCCCCCCCCeEEEEECCCCcEEEeecCCCCCCCCcceEEEE-ECCEEEEEecCCCCCccCeEEEEECCC
Q 005043 256 LYDDKNLLIFGGSSKSKTLNDLYSLDFETMIWTRIKIRGFHPSPRAGCCGVL-CGTKWYIAGGGSRKKRHAETLIFDILK 334 (717)
Q Consensus 256 ~~~~~~lyV~GG~~~~~~~ndv~~yd~~t~~W~~v~~~g~~P~~R~~~sav~-~~~~IyV~GG~~~~~~~~dv~~yD~~t 334 (717)
...+..+++.|+.+ ..+..||+.+..-...... .....+++. -+++++++|+.++ .+.+||+.+
T Consensus 191 ~~~~~~~l~~~~~d-----g~i~~~d~~~~~~~~~~~~-----~~~v~~~~~s~~~~~l~~~~~~~-----~i~~~~~~~ 255 (337)
T 1gxr_A 191 ISNDGTKLWTGGLD-----NTVRSWDLREGRQLQQHDF-----TSQIFSLGYCPTGEWLAVGMESS-----NVEVLHVNK 255 (337)
T ss_dssp ECTTSSEEEEEETT-----SEEEEEETTTTEEEEEEEC-----SSCEEEEEECTTSSEEEEEETTS-----CEEEEETTS
T ss_pred ECCCCCEEEEEecC-----CcEEEEECCCCceEeeecC-----CCceEEEEECCCCCEEEEEcCCC-----cEEEEECCC
Confidence 33333366666654 3599999987764433221 111223333 2567777777554 489999988
Q ss_pred CcEEEeecCCCCCCCCCcceEEEEEEeCCCcEEEEEcCCCCCCCCeEEEEEccCCc
Q 005043 335 GEWSVAITSPSSSVTSNKGFTLVLVQHKEKDFLVAFGGIKKEPSNQVEVLSIEKNE 390 (717)
Q Consensus 335 ~~W~~l~~~p~~~~~~r~g~s~v~v~~~~~~~I~v~GG~~~~~~n~v~vyd~~~~e 390 (717)
..-..+.. .......+.+.. ++.+++.|+.+ ..+.+||+.+.+
T Consensus 256 ~~~~~~~~-------~~~~v~~~~~~~--~~~~l~~~~~d----g~i~~~~~~~~~ 298 (337)
T 1gxr_A 256 PDKYQLHL-------HESCVLSLKFAY--CGKWFVSTGKD----NLLNAWRTPYGA 298 (337)
T ss_dssp SCEEEECC-------CSSCEEEEEECT--TSSEEEEEETT----SEEEEEETTTCC
T ss_pred CCeEEEcC-------CccceeEEEECC--CCCEEEEecCC----CcEEEEECCCCe
Confidence 76433321 111223333322 34456666653 268888887765
No 51
>2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A*
Probab=97.02 E-value=0.33 Score=48.49 Aligned_cols=226 Identities=8% Similarity=-0.015 Sum_probs=117.9
Q ss_pred CCEEEEEcccCCCCCcccEEEEEcCCCceEEccccccCCCCCCCCCCCcccceEEEEE-CCEEEEEeccCCCCCCceEEE
Q 005043 98 GNKMIVVGGESGNGLLDDVQVLNFDRFSWTAASSKLYLSPSSLPLKIPACRGHSLISW-GKKVLLVGGKTDSGSDRVSVW 176 (717)
Q Consensus 98 ~~~lyV~GG~~~~~~~~~v~~yd~~t~~W~~l~~~~~~~~~~~~~~~p~r~~hs~v~~-~~~Iyv~GG~~~~~~~~~~v~ 176 (717)
++.+|+..... ..+++||+. ..+..... +.....-++++.. ++.+|+.... ...++
T Consensus 67 ~g~l~v~~~~~-----~~i~~~~~~-g~~~~~~~-----------~~~~~~~~~i~~~~~g~l~v~~~~------~~~i~ 123 (299)
T 2z2n_A 67 DGEVWFTENAA-----NKIGRITKK-GIIKEYTL-----------PNPDSAPYGITEGPNGDIWFTEMN------GNRIG 123 (299)
T ss_dssp TSCEEEEETTT-----TEEEEECTT-SCEEEEEC-----------SSTTCCEEEEEECTTSCEEEEETT------TTEEE
T ss_pred CCCEEEeCCCC-----CeEEEECCC-CcEEEEeC-----------CCcCCCceeeEECCCCCEEEEecC------CceEE
Confidence 46788875422 258899986 44544431 0111122444444 5778886533 13689
Q ss_pred EEECCCCcEEEeeecCCCCCCceeeEEEEE-CCEEEEEccccCCCCCcCcEEEEEcCCCceEeccCCCCCCCCCcccEEE
Q 005043 177 TFDTETECWSVVEAKGDIPVARSGHTVVRA-SSVLILFGGEDGKRRKLNDLHMFDLKSLTWLPLHCTGTGPSPRSNHVAA 255 (717)
Q Consensus 177 ~yD~~t~~W~~l~~~g~~P~~R~~hs~~~~-~~~Lyv~GG~~~~~~~~~~v~~yD~~t~~W~~l~~~g~~P~~R~~~aa~ 255 (717)
+||+ ++........ ......+.++.. ++.+|+... ..+.+++||+ +.+.......... ..-..++
T Consensus 124 ~~d~-~g~~~~~~~~---~~~~~~~~i~~~~~g~l~v~~~------~~~~i~~~~~-~g~~~~~~~~~~~---~~~~~i~ 189 (299)
T 2z2n_A 124 RITD-DGKIREYELP---NKGSYPSFITLGSDNALWFTEN------QNNAIGRITE-SGDITEFKIPTPA---SGPVGIT 189 (299)
T ss_dssp EECT-TCCEEEEECS---STTCCEEEEEECTTSCEEEEET------TTTEEEEECT-TCCEEEEECSSTT---CCEEEEE
T ss_pred EECC-CCCEEEecCC---CCCCCCceEEEcCCCCEEEEeC------CCCEEEEEcC-CCcEEEeeCCCCC---CcceeEE
Confidence 9999 6666655421 111223344444 468888642 1256899999 7777654211111 1112333
Q ss_pred EECCcEEEEEcCCCCCCCCCeEEEEECCCCcEEEeecCCCCCCCCcc-eEEEEE-CCEEEEEecCCCCCccCeEEEEECC
Q 005043 256 LYDDKNLLIFGGSSKSKTLNDLYSLDFETMIWTRIKIRGFHPSPRAG-CCGVLC-GTKWYIAGGGSRKKRHAETLIFDIL 333 (717)
Q Consensus 256 ~~~~~~lyV~GG~~~~~~~ndv~~yd~~t~~W~~v~~~g~~P~~R~~-~sav~~-~~~IyV~GG~~~~~~~~dv~~yD~~ 333 (717)
...+..+|+.... .+.+.+||+ ++.+..+.. +..... .+++.. ++.+|+..... +.+++||+
T Consensus 190 ~~~~g~l~v~~~~-----~~~i~~~~~-~g~~~~~~~----~~~~~~~~~i~~~~~g~l~v~~~~~-----~~i~~~d~- 253 (299)
T 2z2n_A 190 KGNDDALWFVEII-----GNKIGRITT-SGEITEFKI----PTPNARPHAITAGAGIDLWFTEWGA-----NKIGRLTS- 253 (299)
T ss_dssp ECTTSSEEEEETT-----TTEEEEECT-TCCEEEEEC----SSTTCCEEEEEECSTTCEEEEETTT-----TEEEEEET-
T ss_pred ECCCCCEEEEccC-----CceEEEECC-CCcEEEEEC----CCCCCCceeEEECCCCCEEEeccCC-----ceEEEECC-
Confidence 4333347776532 246999999 777776532 111122 233332 56788875322 35899999
Q ss_pred CCcEEEeecCCCCCCCCCcceEEEEEEeCCCcEEEEEcCCCCCCCCeEEEEEccCC
Q 005043 334 KGEWSVAITSPSSSVTSNKGFTLVLVQHKEKDFLVAFGGIKKEPSNQVEVLSIEKN 389 (717)
Q Consensus 334 t~~W~~l~~~p~~~~~~r~g~s~v~v~~~~~~~I~v~GG~~~~~~n~v~vyd~~~~ 389 (717)
+.....+.. +.. ...-.+++ + .++.||+... .+.+..|++.+.
T Consensus 254 ~g~~~~~~~-~~~---~~~~~~i~-~---~~g~l~v~~~-----~~~l~~~~~~~~ 296 (299)
T 2z2n_A 254 NNIIEEYPI-QIK---SAEPHGIC-F---DGETIWFAME-----CDKIGKLTLIKD 296 (299)
T ss_dssp TTEEEEEEC-SSS---SCCEEEEE-E---CSSCEEEEET-----TTEEEEEEEC--
T ss_pred CCceEEEeC-CCC---CCccceEE-e---cCCCEEEEec-----CCcEEEEEcCcc
Confidence 455554431 111 11112232 2 2556776543 137888888765
No 52
>4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=97.01 E-value=0.07 Score=57.00 Aligned_cols=234 Identities=11% Similarity=0.106 Sum_probs=117.0
Q ss_pred CCEEEEEcccCCCCCcccEEEEEcCCCceEEccccccCCCCCCCCCCCcccceEEEEECCEEEEEeccCCCCCCceEEEE
Q 005043 98 GNKMIVVGGESGNGLLDDVQVLNFDRFSWTAASSKLYLSPSSLPLKIPACRGHSLISWGKKVLLVGGKTDSGSDRVSVWT 177 (717)
Q Consensus 98 ~~~lyV~GG~~~~~~~~~v~~yd~~t~~W~~l~~~~~~~~~~~~~~~p~r~~hs~v~~~~~Iyv~GG~~~~~~~~~~v~~ 177 (717)
++.++++|+.++ .+.+||+.+......-. .... ....+.+++.+++.|+.+ ..+.+
T Consensus 145 ~~~~l~~~~~dg-----~i~iwd~~~~~~~~~~~------------~~~~-~v~~~~~~~~~l~~~~~d------g~i~i 200 (401)
T 4aez_A 145 DGSFLSVGLGNG-----LVDIYDVESQTKLRTMA------------GHQA-RVGCLSWNRHVLSSGSRS------GAIHH 200 (401)
T ss_dssp TSSEEEEEETTS-----CEEEEETTTCCEEEEEC------------CCSS-CEEEEEEETTEEEEEETT------SEEEE
T ss_pred CCCEEEEECCCC-----eEEEEECcCCeEEEEec------------CCCC-ceEEEEECCCEEEEEcCC------CCEEE
Confidence 455667776543 58899988765433211 0111 123334466677777754 26889
Q ss_pred EECCCCcEEEeeecCCCCCCceeeEEEEE-CCEEEEEccccCCCCCcCcEEEEEcCCCceEeccCCCCCCCCCcccEEEE
Q 005043 178 FDTETECWSVVEAKGDIPVARSGHTVVRA-SSVLILFGGEDGKRRKLNDLHMFDLKSLTWLPLHCTGTGPSPRSNHVAAL 256 (717)
Q Consensus 178 yD~~t~~W~~l~~~g~~P~~R~~hs~~~~-~~~Lyv~GG~~~~~~~~~~v~~yD~~t~~W~~l~~~g~~P~~R~~~aa~~ 256 (717)
||+.+..-...... .....-.+++.. ++.+++.|+.++ .+.+||+.+..-...- ......-.+++.
T Consensus 201 ~d~~~~~~~~~~~~---~~~~~v~~~~~~~~~~~l~s~~~d~------~v~iwd~~~~~~~~~~----~~~~~~v~~~~~ 267 (401)
T 4aez_A 201 HDVRIANHQIGTLQ---GHSSEVCGLAWRSDGLQLASGGNDN------VVQIWDARSSIPKFTK----TNHNAAVKAVAW 267 (401)
T ss_dssp EETTSSSCEEEEEE---CCSSCEEEEEECTTSSEEEEEETTS------CEEEEETTCSSEEEEE----CCCSSCCCEEEE
T ss_pred EecccCcceeeEEc---CCCCCeeEEEEcCCCCEEEEEeCCC------eEEEccCCCCCccEEe----cCCcceEEEEEE
Confidence 99874332211111 111112223332 567777777543 4889999875432211 011111223444
Q ss_pred EC-CcEEEEEcCCCCCCCCCeEEEEECCCCcEEEeecCCCCCCCCcceEEEEE-C-CEEEEEecCCCCCccCeEEEEECC
Q 005043 257 YD-DKNLLIFGGSSKSKTLNDLYSLDFETMIWTRIKIRGFHPSPRAGCCGVLC-G-TKWYIAGGGSRKKRHAETLIFDIL 333 (717)
Q Consensus 257 ~~-~~~lyV~GG~~~~~~~ndv~~yd~~t~~W~~v~~~g~~P~~R~~~sav~~-~-~~IyV~GG~~~~~~~~dv~~yD~~ 333 (717)
.. +..+++.||... -..+..||..+..-...-.. ...-.+++.. + ..+++.+|... ..+.+||..
T Consensus 268 ~p~~~~ll~~~~gs~---d~~i~i~d~~~~~~~~~~~~-----~~~v~~~~~s~~~~~l~~~~g~~d----g~i~v~~~~ 335 (401)
T 4aez_A 268 CPWQSNLLATGGGTM---DKQIHFWNAATGARVNTVDA-----GSQVTSLIWSPHSKEIMSTHGFPD----NNLSIWSYS 335 (401)
T ss_dssp CTTSTTEEEEECCTT---TCEEEEEETTTCCEEEEEEC-----SSCEEEEEECSSSSEEEEEECTTT----CEEEEEEEE
T ss_pred CCCCCCEEEEecCCC---CCEEEEEECCCCCEEEEEeC-----CCcEEEEEECCCCCeEEEEeecCC----CcEEEEecC
Confidence 43 334777765211 13599999987765443321 1112222222 3 44555545332 358899988
Q ss_pred CCcEEEeecCCCCCCCCCcceEEEEEEeCCCcEEEEEcCCCCCCCCeEEEEEccCCc
Q 005043 334 KGEWSVAITSPSSSVTSNKGFTLVLVQHKEKDFLVAFGGIKKEPSNQVEVLSIEKNE 390 (717)
Q Consensus 334 t~~W~~l~~~p~~~~~~r~g~s~v~v~~~~~~~I~v~GG~~~~~~n~v~vyd~~~~e 390 (717)
+.....+...+.. ......+.+.. ++.+++.||.++ .+.+|++.+.+
T Consensus 336 ~~~~~~~~~~~~h----~~~v~~~~~s~--dg~~l~s~~~dg----~i~iw~~~~~~ 382 (401)
T 4aez_A 336 SSGLTKQVDIPAH----DTRVLYSALSP--DGRILSTAASDE----NLKFWRVYDGD 382 (401)
T ss_dssp TTEEEEEEEEECC----SSCCCEEEECT--TSSEEEEECTTS----EEEEEECCC--
T ss_pred CccceeEEEecCC----CCCEEEEEECC--CCCEEEEEeCCC----cEEEEECCCCc
Confidence 8776665422211 11122233322 344566666542 68899988766
No 53
>1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A
Probab=97.00 E-value=0.12 Score=52.55 Aligned_cols=225 Identities=13% Similarity=0.103 Sum_probs=115.7
Q ss_pred CCEEEEEcccCCCCCcccEEEEEcCCCceEEccccccCCCCCCCCCCCcccceEEEEE-CCEEEEEeccCCCCCCceEEE
Q 005043 98 GNKMIVVGGESGNGLLDDVQVLNFDRFSWTAASSKLYLSPSSLPLKIPACRGHSLISW-GKKVLLVGGKTDSGSDRVSVW 176 (717)
Q Consensus 98 ~~~lyV~GG~~~~~~~~~v~~yd~~t~~W~~l~~~~~~~~~~~~~~~p~r~~hs~v~~-~~~Iyv~GG~~~~~~~~~~v~ 176 (717)
+++.++.|+.++ .+.+||+.+..+...... ......-.+++.. ++..++.|+.+. .+.
T Consensus 108 ~~~~l~~~~~d~-----~i~~~d~~~~~~~~~~~~----------~~~~~~i~~~~~~~~~~~l~~~~~dg------~v~ 166 (337)
T 1gxr_A 108 DGCTLIVGGEAS-----TLSIWDLAAPTPRIKAEL----------TSSAPACYALAISPDSKVCFSCCSDG------NIA 166 (337)
T ss_dssp TSSEEEEEESSS-----EEEEEECCCC--EEEEEE----------ECSSSCEEEEEECTTSSEEEEEETTS------CEE
T ss_pred CCCEEEEEcCCC-----cEEEEECCCCCcceeeec----------ccCCCceEEEEECCCCCEEEEEeCCC------cEE
Confidence 455666776542 689999988775443321 0111111223332 556677776532 588
Q ss_pred EEECCCCcEEEeeecCCCCCCceeeEEEEE-CCEEEEEccccCCCCCcCcEEEEEcCCCceEeccCCCCCCCCCcccEEE
Q 005043 177 TFDTETECWSVVEAKGDIPVARSGHTVVRA-SSVLILFGGEDGKRRKLNDLHMFDLKSLTWLPLHCTGTGPSPRSNHVAA 255 (717)
Q Consensus 177 ~yD~~t~~W~~l~~~g~~P~~R~~hs~~~~-~~~Lyv~GG~~~~~~~~~~v~~yD~~t~~W~~l~~~g~~P~~R~~~aa~ 255 (717)
+||+.+.+....-. .... .-.+++.. ++..++.|+.+ ..+.+||+.+.+-.... .. ...-.+++
T Consensus 167 ~~d~~~~~~~~~~~---~~~~-~i~~~~~~~~~~~l~~~~~d------g~i~~~d~~~~~~~~~~---~~--~~~v~~~~ 231 (337)
T 1gxr_A 167 VWDLHNQTLVRQFQ---GHTD-GASCIDISNDGTKLWTGGLD------NTVRSWDLREGRQLQQH---DF--TSQIFSLG 231 (337)
T ss_dssp EEETTTTEEEEEEC---CCSS-CEEEEEECTTSSEEEEEETT------SEEEEEETTTTEEEEEE---EC--SSCEEEEE
T ss_pred EEeCCCCceeeeee---cccC-ceEEEEECCCCCEEEEEecC------CcEEEEECCCCceEeee---cC--CCceEEEE
Confidence 99998876543321 1111 22233332 45667776643 35889999876543321 11 11122334
Q ss_pred EECCcEEEEEcCCCCCCCCCeEEEEECCCCcEEEeecCCCCCCCCcceEEEEE-CCEEEEEecCCCCCccCeEEEEECCC
Q 005043 256 LYDDKNLLIFGGSSKSKTLNDLYSLDFETMIWTRIKIRGFHPSPRAGCCGVLC-GTKWYIAGGGSRKKRHAETLIFDILK 334 (717)
Q Consensus 256 ~~~~~~lyV~GG~~~~~~~ndv~~yd~~t~~W~~v~~~g~~P~~R~~~sav~~-~~~IyV~GG~~~~~~~~dv~~yD~~t 334 (717)
...+..++++|+.++ .+..||+.+..-..+.. ....-.+++.. ++++++.|+.++ .+.+||+.+
T Consensus 232 ~s~~~~~l~~~~~~~-----~i~~~~~~~~~~~~~~~-----~~~~v~~~~~~~~~~~l~~~~~dg-----~i~~~~~~~ 296 (337)
T 1gxr_A 232 YCPTGEWLAVGMESS-----NVEVLHVNKPDKYQLHL-----HESCVLSLKFAYCGKWFVSTGKDN-----LLNAWRTPY 296 (337)
T ss_dssp ECTTSSEEEEEETTS-----CEEEEETTSSCEEEECC-----CSSCEEEEEECTTSSEEEEEETTS-----EEEEEETTT
T ss_pred ECCCCCEEEEEcCCC-----cEEEEECCCCCeEEEcC-----CccceeEEEECCCCCEEEEecCCC-----cEEEEECCC
Confidence 434433667776543 48999998776443322 11112222222 567777777543 589999988
Q ss_pred CcEEEeecCCCCCCCCCcceEEEEEEeCCCcEEEEEcCCCCCCCCeEEEEEc
Q 005043 335 GEWSVAITSPSSSVTSNKGFTLVLVQHKEKDFLVAFGGIKKEPSNQVEVLSI 386 (717)
Q Consensus 335 ~~W~~l~~~p~~~~~~r~g~s~v~v~~~~~~~I~v~GG~~~~~~n~v~vyd~ 386 (717)
..-...... ......+.+. .++..++.|+.++ .+.+|++
T Consensus 297 ~~~~~~~~~-------~~~v~~~~~s--~~~~~l~~~~~dg----~i~iw~~ 335 (337)
T 1gxr_A 297 GASIFQSKE-------SSSVLSCDIS--VDDKYIVTGSGDK----KATVYEV 335 (337)
T ss_dssp CCEEEEEEC-------SSCEEEEEEC--TTSCEEEEEETTS----CEEEEEE
T ss_pred CeEEEEecC-------CCcEEEEEEC--CCCCEEEEecCCC----eEEEEEE
Confidence 765433211 1112233332 2344566666543 4566664
No 54
>1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B*
Probab=96.98 E-value=0.089 Score=54.91 Aligned_cols=233 Identities=11% Similarity=0.054 Sum_probs=116.0
Q ss_pred CCEEEEEcccCCCCCcccEEEEEcCCCceEEccccccCCCCCCCCCCCcccceEEEE-ECCEEEEEeccCCCCCCceEEE
Q 005043 98 GNKMIVVGGESGNGLLDDVQVLNFDRFSWTAASSKLYLSPSSLPLKIPACRGHSLIS-WGKKVLLVGGKTDSGSDRVSVW 176 (717)
Q Consensus 98 ~~~lyV~GG~~~~~~~~~v~~yd~~t~~W~~l~~~~~~~~~~~~~~~p~r~~hs~v~-~~~~Iyv~GG~~~~~~~~~~v~ 176 (717)
++.+++.||.++ .+.+||..+..-...-+ .....-.+++. -++.+++.||.+ ..+.
T Consensus 66 d~~~l~s~s~Dg-----~v~iWd~~~~~~~~~~~------------~~~~~v~~~~~s~~~~~l~s~~~d------~~v~ 122 (340)
T 1got_B 66 DSRLLLSASQDG-----KLIIWDSYTTNKVHAIP------------LRSSWVMTCAYAPSGNYVACGGLD------NICS 122 (340)
T ss_dssp TSSEEEEEETTT-----EEEEEETTTCCEEEEEE------------CSSSCEEEEEECTTSSEEEEEETT------CEEE
T ss_pred CCCEEEEEeCCC-----cEEEEECCCCCcceEee------------cCCccEEEEEECCCCCEEEEEeCC------CeEE
Confidence 455666676553 57888887654322211 11111122222 256677777764 2578
Q ss_pred EEECCCCc--EEEeeecCCCCCCceeeEEEE-ECCEEEEEccccCCCCCcCcEEEEEcCCCceEeccCCCCCCCCCcccE
Q 005043 177 TFDTETEC--WSVVEAKGDIPVARSGHTVVR-ASSVLILFGGEDGKRRKLNDLHMFDLKSLTWLPLHCTGTGPSPRSNHV 253 (717)
Q Consensus 177 ~yD~~t~~--W~~l~~~g~~P~~R~~hs~~~-~~~~Lyv~GG~~~~~~~~~~v~~yD~~t~~W~~l~~~g~~P~~R~~~a 253 (717)
+||+.+.. ........ ...... .++.. -++. ++.|+.+ ..+.+||+.+..-...- .+ ....-.+
T Consensus 123 iw~~~~~~~~~~~~~~~~-~h~~~v-~~~~~~~~~~-l~s~s~d------~~i~~wd~~~~~~~~~~-~~---h~~~v~~ 189 (340)
T 1got_B 123 IYNLKTREGNVRVSRELA-GHTGYL-SCCRFLDDNQ-IVTSSGD------TTCALWDIETGQQTTTF-TG---HTGDVMS 189 (340)
T ss_dssp EEETTTCSBSCEEEEEEE-CCSSCE-EEEEEEETTE-EEEEETT------SCEEEEETTTTEEEEEE-CC---CSSCEEE
T ss_pred EEECccCCCcceeEEEec-CCCccE-EEEEECCCCc-EEEEECC------CcEEEEECCCCcEEEEE-cC---CCCceEE
Confidence 88887642 11111000 011111 12222 3455 4555543 34888999877543321 01 1111223
Q ss_pred EEEECCcEEEEEcCCCCCCCCCeEEEEECCCCcEEEeecCCCCCCCCcceEEEEE-CCEEEEEecCCCCCccCeEEEEEC
Q 005043 254 AALYDDKNLLIFGGSSKSKTLNDLYSLDFETMIWTRIKIRGFHPSPRAGCCGVLC-GTKWYIAGGGSRKKRHAETLIFDI 332 (717)
Q Consensus 254 a~~~~~~~lyV~GG~~~~~~~ndv~~yd~~t~~W~~v~~~g~~P~~R~~~sav~~-~~~IyV~GG~~~~~~~~dv~~yD~ 332 (717)
++...+..+++.|+.++ .+..||+.+..-...-. .....-.+++.. ++.+++.|+.++. +.+||+
T Consensus 190 ~~~~~~~~~l~sg~~d~-----~v~~wd~~~~~~~~~~~----~h~~~v~~v~~~p~~~~l~s~s~d~~-----v~iwd~ 255 (340)
T 1got_B 190 LSLAPDTRLFVSGACDA-----SAKLWDVREGMCRQTFT----GHESDINAICFFPNGNAFATGSDDAT-----CRLFDL 255 (340)
T ss_dssp EEECTTSSEEEEEETTS-----CEEEEETTTCSEEEEEC----CCSSCEEEEEECTTSSEEEEEETTSC-----EEEEET
T ss_pred EEECCCCCEEEEEeCCC-----cEEEEECCCCeeEEEEc----CCcCCEEEEEEcCCCCEEEEEcCCCc-----EEEEEC
Confidence 34444444777887654 48999987765432211 111111222222 6778888886644 889999
Q ss_pred CCCcEEEeecCCCCCCCCCcceEEEEEEeCCCcEEEEEcCCCCCCCCeEEEEEccCCc
Q 005043 333 LKGEWSVAITSPSSSVTSNKGFTLVLVQHKEKDFLVAFGGIKKEPSNQVEVLSIEKNE 390 (717)
Q Consensus 333 ~t~~W~~l~~~p~~~~~~r~g~s~v~v~~~~~~~I~v~GG~~~~~~n~v~vyd~~~~e 390 (717)
.+..-.... .. .....+...+.+.. ++.+++.|+.++ .|.+||+.+.+
T Consensus 256 ~~~~~~~~~--~~--~~~~~~v~~~~~s~--~g~~l~~g~~d~----~i~vwd~~~~~ 303 (340)
T 1got_B 256 RADQELMTY--SH--DNIICGITSVSFSK--SGRLLLAGYDDF----NCNVWDALKAD 303 (340)
T ss_dssp TTTEEEEEE--CC--TTCCSCEEEEEECT--TSSEEEEEETTS----EEEEEETTTCC
T ss_pred CCCcEEEEE--cc--CCcccceEEEEECC--CCCEEEEECCCC----eEEEEEcccCc
Confidence 876533221 11 11122334444432 445667776542 68888876654
No 55
>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B*
Probab=96.92 E-value=0.42 Score=51.51 Aligned_cols=234 Identities=13% Similarity=0.110 Sum_probs=116.8
Q ss_pred EEECCEEEEEcccCCCCCcccEEEEEcCCCceEEccccccCCCCCCCCCCCcccceEEEEECCEEEEEeccCCCCCCceE
Q 005043 95 AVIGNKMIVVGGESGNGLLDDVQVLNFDRFSWTAASSKLYLSPSSLPLKIPACRGHSLISWGKKVLLVGGKTDSGSDRVS 174 (717)
Q Consensus 95 v~~~~~lyV~GG~~~~~~~~~v~~yd~~t~~W~~l~~~~~~~~~~~~~~~p~r~~hs~v~~~~~Iyv~GG~~~~~~~~~~ 174 (717)
+..++.+++.|+.++ .+.+||..+..-...-. .....-.+++...+.+++.|+.+. .
T Consensus 128 ~~~~~~~l~sgs~dg-----~i~vwd~~~~~~~~~~~------------~h~~~V~~l~~~~~~~l~s~s~dg------~ 184 (464)
T 3v7d_B 128 LQFEDNYVITGADDK-----MIRVYDSINKKFLLQLS------------GHDGGVWALKYAHGGILVSGSTDR------T 184 (464)
T ss_dssp EEEETTEEEEEETTS-----CEEEEETTTTEEEEEEC------------CCSSCEEEEEECSTTEEEEEETTS------C
T ss_pred EEECCCEEEEEcCCC-----cEEEEECCCCcEEEEEe------------CCCcCEEEEEEcCCCEEEEEeCCC------C
Confidence 344555667776553 58899987764222111 111112233333344677777542 5
Q ss_pred EEEEECCCCcEEEeeecCCCCCCceeeEEEEE---CCEEEEEccccCCCCCcCcEEEEEcCCCceEeccCC-C-------
Q 005043 175 VWTFDTETECWSVVEAKGDIPVARSGHTVVRA---SSVLILFGGEDGKRRKLNDLHMFDLKSLTWLPLHCT-G------- 243 (717)
Q Consensus 175 v~~yD~~t~~W~~l~~~g~~P~~R~~hs~~~~---~~~Lyv~GG~~~~~~~~~~v~~yD~~t~~W~~l~~~-g------- 243 (717)
+.+||+.+..-...-. ....+ -.++... ++.+++.|+.++ .+.+||+.+..-...... .
T Consensus 185 i~vwd~~~~~~~~~~~--~h~~~--v~~l~~~~~~~~~~l~s~s~d~------~i~vwd~~~~~~~~~~~~~~~~~~~~~ 254 (464)
T 3v7d_B 185 VRVWDIKKGCCTHVFE--GHNST--VRCLDIVEYKNIKYIVTGSRDN------TLHVWKLPKESSVPDHGEEHDYPLVFH 254 (464)
T ss_dssp EEEEETTTTEEEEEEC--CCSSC--EEEEEEEESSSCEEEEEEETTS------CEEEEECCCCCCC------CCSSEEES
T ss_pred EEEEECCCCcEEEEEC--CCCCc--cEEEEEecCCCCCEEEEEcCCC------cEEEeeCCCCcccccccccCCcceEee
Confidence 8889998876433221 11111 1222222 457777777553 377788766542211000 0
Q ss_pred ----------CCCCCCcccEEEEECCcEEEEEcCCCCCCCCCeEEEEECCCCcEEEeecCCCCCCCCcceEEEEE-CCEE
Q 005043 244 ----------TGPSPRSNHVAALYDDKNLLIFGGSSKSKTLNDLYSLDFETMIWTRIKIRGFHPSPRAGCCGVLC-GTKW 312 (717)
Q Consensus 244 ----------~~P~~R~~~aa~~~~~~~lyV~GG~~~~~~~ndv~~yd~~t~~W~~v~~~g~~P~~R~~~sav~~-~~~I 312 (717)
..........++..++. +++.|+.++ .+..||+.+..-...-. .....-.+++.. ++..
T Consensus 255 ~~~~~~~~~~~~~~~~~~v~~~~~~~~-~l~~~~~d~-----~i~vwd~~~~~~~~~~~----~~~~~v~~~~~~~~~~~ 324 (464)
T 3v7d_B 255 TPEENPYFVGVLRGHMASVRTVSGHGN-IVVSGSYDN-----TLIVWDVAQMKCLYILS----GHTDRIYSTIYDHERKR 324 (464)
T ss_dssp CGGGCTTEEEEECCCSSCEEEEEEETT-EEEEEETTS-----CEEEEETTTTEEEEEEC----CCSSCEEEEEEETTTTE
T ss_pred ccCCCeEEEEEccCccceEEEEcCCCC-EEEEEeCCC-----eEEEEECCCCcEEEEec----CCCCCEEEEEEcCCCCE
Confidence 00001111122233455 666776654 49999998765433321 111122233332 5667
Q ss_pred EEEecCCCCCccCeEEEEECCCCcEEEeecCCCCCCCCCcceEEEEEEeCCCcEEEEEcCCCCCCCCeEEEEEccCCc
Q 005043 313 YIAGGGSRKKRHAETLIFDILKGEWSVAITSPSSSVTSNKGFTLVLVQHKEKDFLVAFGGIKKEPSNQVEVLSIEKNE 390 (717)
Q Consensus 313 yV~GG~~~~~~~~dv~~yD~~t~~W~~l~~~p~~~~~~r~g~s~v~v~~~~~~~I~v~GG~~~~~~n~v~vyd~~~~e 390 (717)
++.|+.++. +.+||+.+.+-.... .. .......+.+ .+..++.|+.++ .+.+||+.+..
T Consensus 325 l~sg~~dg~-----i~vwd~~~~~~~~~~--~~----h~~~v~~~~~----~~~~l~s~s~dg----~v~vwd~~~~~ 383 (464)
T 3v7d_B 325 CISASMDTT-----IRIWDLENGELMYTL--QG----HTALVGLLRL----SDKFLVSAAADG----SIRGWDANDYS 383 (464)
T ss_dssp EEEEETTSC-----EEEEETTTTEEEEEE--CC----CSSCEEEEEE----CSSEEEEEETTS----EEEEEETTTCC
T ss_pred EEEEeCCCc-----EEEEECCCCcEEEEE--eC----CCCcEEEEEE----cCCEEEEEeCCC----cEEEEECCCCc
Confidence 777876544 899999876543322 11 1112233333 233556666543 58888887754
No 56
>1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae}
Probab=96.92 E-value=0.063 Score=56.58 Aligned_cols=232 Identities=9% Similarity=-0.027 Sum_probs=114.9
Q ss_pred CCEEEEEcccCCCCCcccEEEEEcCCCceEEccccccCCCCCCCCCCCcccceEEEEE-CCEEEEEeccCCCCCCceEEE
Q 005043 98 GNKMIVVGGESGNGLLDDVQVLNFDRFSWTAASSKLYLSPSSLPLKIPACRGHSLISW-GKKVLLVGGKTDSGSDRVSVW 176 (717)
Q Consensus 98 ~~~lyV~GG~~~~~~~~~v~~yd~~t~~W~~l~~~~~~~~~~~~~~~p~r~~hs~v~~-~~~Iyv~GG~~~~~~~~~~v~ 176 (717)
++.+++.|+.++ .+.+||........+.. ....-.+++.. ++..++.|+.+ ..+.
T Consensus 119 ~~~~l~~~~~dg-----~i~i~~~~~~~~~~~~~-------------~~~~v~~~~~~~~~~~l~~~~~d------~~i~ 174 (425)
T 1r5m_A 119 DGNSIVTGVENG-----ELRLWNKTGALLNVLNF-------------HRAPIVSVKWNKDGTHIISMDVE------NVTI 174 (425)
T ss_dssp TSSEEEEEETTS-----CEEEEETTSCEEEEECC-------------CCSCEEEEEECTTSSEEEEEETT------CCEE
T ss_pred CCCEEEEEeCCC-----eEEEEeCCCCeeeeccC-------------CCccEEEEEECCCCCEEEEEecC------CeEE
Confidence 466777777553 47888854444433332 11111233332 45566666653 2588
Q ss_pred EEECCCCcEEEeeecCCCC-----------CCceeeEEEEECCEEEEEccccCCCCCcCcEEEEEcCCCceEeccCCCCC
Q 005043 177 TFDTETECWSVVEAKGDIP-----------VARSGHTVVRASSVLILFGGEDGKRRKLNDLHMFDLKSLTWLPLHCTGTG 245 (717)
Q Consensus 177 ~yD~~t~~W~~l~~~g~~P-----------~~R~~hs~~~~~~~Lyv~GG~~~~~~~~~~v~~yD~~t~~W~~l~~~g~~ 245 (717)
+||+.+......-.....+ ......+++...+..++.|+.+ ..+.+||+.+..-...- .
T Consensus 175 iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------g~i~~~d~~~~~~~~~~---~- 244 (425)
T 1r5m_A 175 LWNVISGTVMQHFELKETGGSSINAENHSGDGSLGVDVEWVDDDKFVIPGPK------GAIFVYQITEKTPTGKL---I- 244 (425)
T ss_dssp EEETTTTEEEEEECCC---------------CCCBSCCEEEETTEEEEECGG------GCEEEEETTCSSCSEEE---C-
T ss_pred EEECCCCcEEEEeeccccCccceeeccccCCcceeeEEEEcCCCEEEEEcCC------CeEEEEEcCCCceeeee---c-
Confidence 8999877654332111001 0000223333344456666644 35889998876432211 0
Q ss_pred CCCCcccEEEEECCcEEEEEcCCCCCCCCCeEEEEECCCCcEEEeecCCCCCCCCcceEEEEE-CCEEEEEecCCCCCcc
Q 005043 246 PSPRSNHVAALYDDKNLLIFGGSSKSKTLNDLYSLDFETMIWTRIKIRGFHPSPRAGCCGVLC-GTKWYIAGGGSRKKRH 324 (717)
Q Consensus 246 P~~R~~~aa~~~~~~~lyV~GG~~~~~~~ndv~~yd~~t~~W~~v~~~g~~P~~R~~~sav~~-~~~IyV~GG~~~~~~~ 324 (717)
.....-.+++...+..+++.|+.++ .+.+||+.+......-. .......+++.. ++ +++.|+.++
T Consensus 245 ~~~~~i~~~~~~~~~~~l~~~~~d~-----~i~i~d~~~~~~~~~~~----~~~~~i~~~~~~~~~-~l~~~~~d~---- 310 (425)
T 1r5m_A 245 GHHGPISVLEFNDTNKLLLSASDDG-----TLRIWHGGNGNSQNCFY----GHSQSIVSASWVGDD-KVISCSMDG---- 310 (425)
T ss_dssp CCSSCEEEEEEETTTTEEEEEETTS-----CEEEECSSSBSCSEEEC----CCSSCEEEEEEETTT-EEEEEETTS----
T ss_pred cCCCceEEEEECCCCCEEEEEcCCC-----EEEEEECCCCccceEec----CCCccEEEEEECCCC-EEEEEeCCC----
Confidence 1111122334443333667776543 48899987654322211 111222333333 45 667776543
Q ss_pred CeEEEEECCCCcEEEeecCCCCCCCCCcceEEEEEEeCCCcEEEEEcCCCCCCCCeEEEEEccCCc
Q 005043 325 AETLIFDILKGEWSVAITSPSSSVTSNKGFTLVLVQHKEKDFLVAFGGIKKEPSNQVEVLSIEKNE 390 (717)
Q Consensus 325 ~dv~~yD~~t~~W~~l~~~p~~~~~~r~g~s~v~v~~~~~~~I~v~GG~~~~~~n~v~vyd~~~~e 390 (717)
.+.+||+.+..-...... .......+.+.. ++.+++.|+.++ .|.+||+.+.+
T Consensus 311 -~i~i~d~~~~~~~~~~~~------~~~~i~~~~~s~--~~~~l~~~~~dg----~i~i~~~~~~~ 363 (425)
T 1r5m_A 311 -SVRLWSLKQNTLLALSIV------DGVPIFAGRISQ--DGQKYAVAFMDG----QVNVYDLKKLN 363 (425)
T ss_dssp -EEEEEETTTTEEEEEEEC------TTCCEEEEEECT--TSSEEEEEETTS----CEEEEECHHHH
T ss_pred -cEEEEECCCCcEeEeccc------CCccEEEEEEcC--CCCEEEEEECCC----eEEEEECCCCc
Confidence 589999987664433211 111223333322 344666676543 58888887654
No 57
>3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens}
Probab=96.90 E-value=0.26 Score=51.07 Aligned_cols=226 Identities=10% Similarity=0.058 Sum_probs=114.6
Q ss_pred CEEEEEcccCCCCCcccEEEEEcCCCceEEccccccCCCCCCCCCCCcccceEEEEECCEEEEEeccCCCCCCceEEEEE
Q 005043 99 NKMIVVGGESGNGLLDDVQVLNFDRFSWTAASSKLYLSPSSLPLKIPACRGHSLISWGKKVLLVGGKTDSGSDRVSVWTF 178 (717)
Q Consensus 99 ~~lyV~GG~~~~~~~~~v~~yd~~t~~W~~l~~~~~~~~~~~~~~~p~r~~hs~v~~~~~Iyv~GG~~~~~~~~~~v~~y 178 (717)
+.+++.|+.++ .+.+||+.+..-...-.. .+.........-++..++.|+.. ..+.+|
T Consensus 92 ~~~l~s~s~D~-----~i~lWd~~~~~~~~~~~~-----------~~~~~~~~~~spdg~~l~~g~~d------g~v~i~ 149 (321)
T 3ow8_A 92 LPIAASSSLDA-----HIRLWDLENGKQIKSIDA-----------GPVDAWTLAFSPDSQYLATGTHV------GKVNIF 149 (321)
T ss_dssp SSEEEEEETTS-----EEEEEETTTTEEEEEEEC-----------CTTCCCCEEECTTSSEEEEECTT------SEEEEE
T ss_pred CCEEEEEeCCC-----cEEEEECCCCCEEEEEeC-----------CCccEEEEEECCCCCEEEEEcCC------CcEEEE
Confidence 44666666543 588899887643322110 00111111222256677777653 268888
Q ss_pred ECCCCcEEEeeecCCCCCCceeeEEEEE-CCEEEEEccccCCCCCcCcEEEEEcCCCceEeccCCCCCCCCCcccEEEEE
Q 005043 179 DTETECWSVVEAKGDIPVARSGHTVVRA-SSVLILFGGEDGKRRKLNDLHMFDLKSLTWLPLHCTGTGPSPRSNHVAALY 257 (717)
Q Consensus 179 D~~t~~W~~l~~~g~~P~~R~~hs~~~~-~~~Lyv~GG~~~~~~~~~~v~~yD~~t~~W~~l~~~g~~P~~R~~~aa~~~ 257 (717)
|..+..-...-. .....-.+++.. ++++++.|+.++ .+.+||+.+.+-...- .+ . ...-.+++..
T Consensus 150 ~~~~~~~~~~~~----~~~~~v~~~~~spdg~~lasg~~dg------~i~iwd~~~~~~~~~~-~~-h--~~~v~~l~~s 215 (321)
T 3ow8_A 150 GVESGKKEYSLD----TRGKFILSIAYSPDGKYLASGAIDG------IINIFDIATGKLLHTL-EG-H--AMPIRSLTFS 215 (321)
T ss_dssp ETTTCSEEEEEE----CSSSCEEEEEECTTSSEEEEEETTS------CEEEEETTTTEEEEEE-CC-C--SSCCCEEEEC
T ss_pred EcCCCceeEEec----CCCceEEEEEECCCCCEEEEEcCCC------eEEEEECCCCcEEEEE-cc-c--CCceeEEEEc
Confidence 988765432211 111122233332 467777777553 4889999877543221 01 1 1111234444
Q ss_pred CCcEEEEEcCCCCCCCCCeEEEEECCCCcEEEeecCCCCCCCCcceEEEEE-CCEEEEEecCCCCCccCeEEEEECCCCc
Q 005043 258 DDKNLLIFGGSSKSKTLNDLYSLDFETMIWTRIKIRGFHPSPRAGCCGVLC-GTKWYIAGGGSRKKRHAETLIFDILKGE 336 (717)
Q Consensus 258 ~~~~lyV~GG~~~~~~~ndv~~yd~~t~~W~~v~~~g~~P~~R~~~sav~~-~~~IyV~GG~~~~~~~~dv~~yD~~t~~ 336 (717)
.+..+++.|+.++ .|.+||+.+......-. .....-.+++.. ++..++.|+.++. +.+||+.+.+
T Consensus 216 pd~~~l~s~s~dg-----~i~iwd~~~~~~~~~~~----~h~~~v~~~~~sp~~~~l~s~s~D~~-----v~iwd~~~~~ 281 (321)
T 3ow8_A 216 PDSQLLVTASDDG-----YIKIYDVQHANLAGTLS----GHASWVLNVAFCPDDTHFVSSSSDKS-----VKVWDVGTRT 281 (321)
T ss_dssp TTSCEEEEECTTS-----CEEEEETTTCCEEEEEC----CCSSCEEEEEECTTSSEEEEEETTSC-----EEEEETTTTE
T ss_pred CCCCEEEEEcCCC-----eEEEEECCCcceeEEEc----CCCCceEEEEECCCCCEEEEEeCCCc-----EEEEeCCCCE
Confidence 4444777787654 48999998766543221 111111222222 5777888886644 8899998765
Q ss_pred EEEeecCCCCCCCCCcceEEEEEEeCCCcEEEEEcCCCCCCCCeEEEEEc
Q 005043 337 WSVAITSPSSSVTSNKGFTLVLVQHKEKDFLVAFGGIKKEPSNQVEVLSI 386 (717)
Q Consensus 337 W~~l~~~p~~~~~~r~g~s~v~v~~~~~~~I~v~GG~~~~~~n~v~vyd~ 386 (717)
-.... .. .......+.+. .++..++.||.++ .|.+||.
T Consensus 282 ~~~~~--~~----h~~~v~~v~~s--~~g~~l~s~~~d~----~i~vwd~ 319 (321)
T 3ow8_A 282 CVHTF--FD----HQDQVWGVKYN--GNGSKIVSVGDDQ----EIHIYDC 319 (321)
T ss_dssp EEEEE--CC----CSSCEEEEEEC--TTSSEEEEEETTC----CEEEEEC
T ss_pred EEEEE--cC----CCCcEEEEEEC--CCCCEEEEEeCCC----eEEEEeC
Confidence 43322 11 11122333332 2344566777543 3666663
No 58
>2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A*
Probab=96.84 E-value=0.46 Score=47.42 Aligned_cols=225 Identities=10% Similarity=-0.027 Sum_probs=119.2
Q ss_pred CCEEEEEcccCCCCCcccEEEEEcCCCceEEccccccCCCCCCCCCCCcccceEEEEE-CCEEEEEeccCCCCCCceEEE
Q 005043 98 GNKMIVVGGESGNGLLDDVQVLNFDRFSWTAASSKLYLSPSSLPLKIPACRGHSLISW-GKKVLLVGGKTDSGSDRVSVW 176 (717)
Q Consensus 98 ~~~lyV~GG~~~~~~~~~v~~yd~~t~~W~~l~~~~~~~~~~~~~~~p~r~~hs~v~~-~~~Iyv~GG~~~~~~~~~~v~ 176 (717)
++.+|+..... ..+.+||+. ..+...... .....-++++.. ++.+|+..... ..++
T Consensus 25 ~g~l~v~~~~~-----~~v~~~d~~-~~~~~~~~~-----------~~~~~~~~i~~~~~g~l~v~~~~~------~~i~ 81 (299)
T 2z2n_A 25 KGKVWITQHKA-----NMISCINLD-GKITEYPLP-----------TPDAKVMCLTISSDGEVWFTENAA------NKIG 81 (299)
T ss_dssp TSCEEEEETTT-----TEEEEECTT-CCEEEEECS-----------STTCCEEEEEECTTSCEEEEETTT------TEEE
T ss_pred CCCEEEEecCC-----CcEEEEcCC-CCeEEecCC-----------cccCceeeEEECCCCCEEEeCCCC------CeEE
Confidence 46788764321 368999998 777655421 111122344443 56788875421 2589
Q ss_pred EEECCCCcEEEeeecCCCC-CCceeeEEEEE-CCEEEEEccccCCCCCcCcEEEEEcCCCceEeccCCCCCCCCCcccEE
Q 005043 177 TFDTETECWSVVEAKGDIP-VARSGHTVVRA-SSVLILFGGEDGKRRKLNDLHMFDLKSLTWLPLHCTGTGPSPRSNHVA 254 (717)
Q Consensus 177 ~yD~~t~~W~~l~~~g~~P-~~R~~hs~~~~-~~~Lyv~GG~~~~~~~~~~v~~yD~~t~~W~~l~~~g~~P~~R~~~aa 254 (717)
+||+. +.+..... | ....-+.++.. ++.||+.... ...+++||+ +.+........ ....-..+
T Consensus 82 ~~~~~-g~~~~~~~----~~~~~~~~~i~~~~~g~l~v~~~~------~~~i~~~d~-~g~~~~~~~~~---~~~~~~~i 146 (299)
T 2z2n_A 82 RITKK-GIIKEYTL----PNPDSAPYGITEGPNGDIWFTEMN------GNRIGRITD-DGKIREYELPN---KGSYPSFI 146 (299)
T ss_dssp EECTT-SCEEEEEC----SSTTCCEEEEEECTTSCEEEEETT------TTEEEEECT-TCCEEEEECSS---TTCCEEEE
T ss_pred EECCC-CcEEEEeC----CCcCCCceeeEECCCCCEEEEecC------CceEEEECC-CCCEEEecCCC---CCCCCceE
Confidence 99986 55655542 2 12233444444 4788886432 246889999 66665543111 11122333
Q ss_pred EEECCcEEEEEcCCCCCCCCCeEEEEECCCCcEEEeecCCCCCCCCcceEEEEE-CCEEEEEecCCCCCccCeEEEEECC
Q 005043 255 ALYDDKNLLIFGGSSKSKTLNDLYSLDFETMIWTRIKIRGFHPSPRAGCCGVLC-GTKWYIAGGGSRKKRHAETLIFDIL 333 (717)
Q Consensus 255 ~~~~~~~lyV~GG~~~~~~~ndv~~yd~~t~~W~~v~~~g~~P~~R~~~sav~~-~~~IyV~GG~~~~~~~~dv~~yD~~ 333 (717)
+...+..+|+.... .+.+++||+ ++....+... .....-.+++.. ++.+|+..... ..+++||+
T Consensus 147 ~~~~~g~l~v~~~~-----~~~i~~~~~-~g~~~~~~~~---~~~~~~~~i~~~~~g~l~v~~~~~-----~~i~~~~~- 211 (299)
T 2z2n_A 147 TLGSDNALWFTENQ-----NNAIGRITE-SGDITEFKIP---TPASGPVGITKGNDDALWFVEIIG-----NKIGRITT- 211 (299)
T ss_dssp EECTTSCEEEEETT-----TTEEEEECT-TCCEEEEECS---STTCCEEEEEECTTSSEEEEETTT-----TEEEEECT-
T ss_pred EEcCCCCEEEEeCC-----CCEEEEEcC-CCcEEEeeCC---CCCCcceeEEECCCCCEEEEccCC-----ceEEEECC-
Confidence 44434447775432 246999999 7777765321 111112233333 57788876432 35899999
Q ss_pred CCcEEEeecCCCCCCCCCcceEEEEEEeCCCcEEEEEcCCCCCCCCeEEEEEc
Q 005043 334 KGEWSVAITSPSSSVTSNKGFTLVLVQHKEKDFLVAFGGIKKEPSNQVEVLSI 386 (717)
Q Consensus 334 t~~W~~l~~~p~~~~~~r~g~s~v~v~~~~~~~I~v~GG~~~~~~n~v~vyd~ 386 (717)
+..+..+.. +. .......+.+. .++.||+.... .+.+.+||+
T Consensus 212 ~g~~~~~~~-~~----~~~~~~~i~~~--~~g~l~v~~~~----~~~i~~~d~ 253 (299)
T 2z2n_A 212 SGEITEFKI-PT----PNARPHAITAG--AGIDLWFTEWG----ANKIGRLTS 253 (299)
T ss_dssp TCCEEEEEC-SS----TTCCEEEEEEC--STTCEEEEETT----TTEEEEEET
T ss_pred CCcEEEEEC-CC----CCCCceeEEEC--CCCCEEEeccC----CceEEEECC
Confidence 777766431 11 11112223332 23457765421 236888887
No 59
>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B*
Probab=96.84 E-value=0.51 Score=50.86 Aligned_cols=146 Identities=11% Similarity=0.100 Sum_probs=79.8
Q ss_pred ECCEEEEEccccCCCCCcCcEEEEEcCCCceEeccCCCCCCCCCcccEEEEECCcEEEEEcCCCCCCCCCeEEEEECCCC
Q 005043 206 ASSVLILFGGEDGKRRKLNDLHMFDLKSLTWLPLHCTGTGPSPRSNHVAALYDDKNLLIFGGSSKSKTLNDLYSLDFETM 285 (717)
Q Consensus 206 ~~~~Lyv~GG~~~~~~~~~~v~~yD~~t~~W~~l~~~g~~P~~R~~~aa~~~~~~~lyV~GG~~~~~~~ndv~~yd~~t~ 285 (717)
.++.+++.|+.++ .+.+||+.+.+-...- ... ...-.+++...+...++.|+.++ .+..||+.++
T Consensus 278 ~~~~~l~~~~~d~------~i~vwd~~~~~~~~~~---~~~-~~~v~~~~~~~~~~~l~sg~~dg-----~i~vwd~~~~ 342 (464)
T 3v7d_B 278 GHGNIVVSGSYDN------TLIVWDVAQMKCLYIL---SGH-TDRIYSTIYDHERKRCISASMDT-----TIRIWDLENG 342 (464)
T ss_dssp EETTEEEEEETTS------CEEEEETTTTEEEEEE---CCC-SSCEEEEEEETTTTEEEEEETTS-----CEEEEETTTT
T ss_pred CCCCEEEEEeCCC------eEEEEECCCCcEEEEe---cCC-CCCEEEEEEcCCCCEEEEEeCCC-----cEEEEECCCC
Confidence 3455666666543 4889998876543221 111 11122333444333667777654 4999999876
Q ss_pred cEEEeecCCCCCCCCcceEEEEECCEEEEEecCCCCCccCeEEEEECCCCcEEEeecCCCCCCCCCcceEEEEEEeCCCc
Q 005043 286 IWTRIKIRGFHPSPRAGCCGVLCGTKWYIAGGGSRKKRHAETLIFDILKGEWSVAITSPSSSVTSNKGFTLVLVQHKEKD 365 (717)
Q Consensus 286 ~W~~v~~~g~~P~~R~~~sav~~~~~IyV~GG~~~~~~~~dv~~yD~~t~~W~~l~~~p~~~~~~r~g~s~v~v~~~~~~ 365 (717)
.-...-. .......++.+++..++.|+.++ .+.+||+.+..-...... . . ....+.+.. ++
T Consensus 343 ~~~~~~~-----~h~~~v~~~~~~~~~l~s~s~dg-----~v~vwd~~~~~~~~~~~~--~---~--~~~~~~~~~--~~ 403 (464)
T 3v7d_B 343 ELMYTLQ-----GHTALVGLLRLSDKFLVSAAADG-----SIRGWDANDYSRKFSYHH--T---N--LSAITTFYV--SD 403 (464)
T ss_dssp EEEEEEC-----CCSSCEEEEEECSSEEEEEETTS-----EEEEEETTTCCEEEEEEC--T---T--CCCEEEEEE--CS
T ss_pred cEEEEEe-----CCCCcEEEEEEcCCEEEEEeCCC-----cEEEEECCCCceeeeecC--C---C--CccEEEEEe--CC
Confidence 5332211 12223344555677788887654 488999987653332210 1 1 112223333 33
Q ss_pred EEEEEcCCCCCCCCeEEEEEccCCc
Q 005043 366 FLVAFGGIKKEPSNQVEVLSIEKNE 390 (717)
Q Consensus 366 ~I~v~GG~~~~~~n~v~vyd~~~~e 390 (717)
.+++.|+ + +.+.+||+.+.+
T Consensus 404 ~~l~~~~-d----g~i~iwd~~~g~ 423 (464)
T 3v7d_B 404 NILVSGS-E----NQFNIYNLRSGK 423 (464)
T ss_dssp SEEEEEE-T----TEEEEEETTTCC
T ss_pred CEEEEec-C----CeEEEEECCCCc
Confidence 4666666 2 379999998876
No 60
>3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum}
Probab=96.83 E-value=0.13 Score=53.27 Aligned_cols=248 Identities=10% Similarity=0.113 Sum_probs=114.4
Q ss_pred CCEEEEEcccCCCCCcccEEEEEcCCCceEEccccccCCCCCCCCCCCcccceEEEEE-C-CEEEEEeccCCCCCCceEE
Q 005043 98 GNKMIVVGGESGNGLLDDVQVLNFDRFSWTAASSKLYLSPSSLPLKIPACRGHSLISW-G-KKVLLVGGKTDSGSDRVSV 175 (717)
Q Consensus 98 ~~~lyV~GG~~~~~~~~~v~~yd~~t~~W~~l~~~~~~~~~~~~~~~p~r~~hs~v~~-~-~~Iyv~GG~~~~~~~~~~v 175 (717)
+++||+.+...+ ...+++||+.+..+..+.... .....-..++.. + ..||+.+... ..+
T Consensus 50 dg~l~~~~~~~~---~~~v~~~~~~~g~~~~~~~~~----------~~~~~p~~~a~spdg~~l~~~~~~~------~~v 110 (347)
T 3hfq_A 50 KDCLYSVDKEDD---EGGIAAWQIDGQTAHKLNTVV----------APGTPPAYVAVDEARQLVYSANYHK------GTA 110 (347)
T ss_dssp TCEEEEEEEETT---EEEEEEEEEETTEEEEEEEEE----------EESCCCSEEEEETTTTEEEEEETTT------TEE
T ss_pred CCeEEEEEecCC---CceEEEEEecCCcEEEeeeee----------cCCCCCEEEEECCCCCEEEEEeCCC------CEE
Confidence 577777764321 246899999888776665410 001111223332 3 4566664321 257
Q ss_pred EEEECC-CCcEEEeee---cCCCCCCc----eeeEEEEE-CCEEEEEccccCCCCCcCcEEEEEcC-CCceEeccCCCCC
Q 005043 176 WTFDTE-TECWSVVEA---KGDIPVAR----SGHTVVRA-SSVLILFGGEDGKRRKLNDLHMFDLK-SLTWLPLHCTGTG 245 (717)
Q Consensus 176 ~~yD~~-t~~W~~l~~---~g~~P~~R----~~hs~~~~-~~~Lyv~GG~~~~~~~~~~v~~yD~~-t~~W~~l~~~g~~ 245 (717)
.+||+. +.....+.. .+..|.+| ..+.++.. ++++|+.+.. .+.+++||+. +.+...+... ..
T Consensus 111 ~v~~~~~~g~~~~~~~~~~~~~~p~~~~~~~~~~~~~~spdg~l~v~~~~------~~~v~~~~~~~~g~~~~~~~~-~~ 183 (347)
T 3hfq_A 111 EVMKIAADGALTLTDTVQHSGHGPRPEQDGSHIHYTDLTPDNRLAVIDLG------SDKVYVYNVSDAGQLSEQSVL-TM 183 (347)
T ss_dssp EEEEECTTSCEEEEEEEECCCCCSSTTCSSCCEEEEEECTTSCEEEEETT------TTEEEEEEECTTSCEEEEEEE-EC
T ss_pred EEEEeCCCCCeeecceeecCCCCCCccccCCCceEEEECCCCcEEEEeCC------CCEEEEEEECCCCcEEEeeeE-Ec
Confidence 777764 334443321 12122111 22334443 4567765432 2468889987 5555533210 11
Q ss_pred CCCCcccEEEEE-CCcEEEEEcCCCCCCCCCeEEEEECC--CCcEEEeecCCCCCCC---CcceEEEEE--CC-EEEEEe
Q 005043 246 PSPRSNHVAALY-DDKNLLIFGGSSKSKTLNDLYSLDFE--TMIWTRIKIRGFHPSP---RAGCCGVLC--GT-KWYIAG 316 (717)
Q Consensus 246 P~~R~~~aa~~~-~~~~lyV~GG~~~~~~~ndv~~yd~~--t~~W~~v~~~g~~P~~---R~~~sav~~--~~-~IyV~G 316 (717)
+....-..++.. +++.+|+.+..+ +.+.+|+.. ++.+..+......|.. ......+.+ ++ .||+.+
T Consensus 184 ~~g~~p~~~~~spdg~~l~v~~~~~-----~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~~spdG~~l~v~~ 258 (347)
T 3hfq_A 184 EAGFGPRHLVFSPDGQYAFLAGELS-----SQIASLKYDTQTGAFTQLGIVKTIPADYTAHNGAAAIRLSHDGHFLYVSN 258 (347)
T ss_dssp CTTCCEEEEEECTTSSEEEEEETTT-----TEEEEEEEETTTTEEEEEEEEESSCTTCCSCCEEEEEEECTTSCEEEEEE
T ss_pred CCCCCCceEEECCCCCEEEEEeCCC-----CEEEEEEecCCCCceEEeeeeeecCCCCCCCCcceeEEECCCCCEEEEEe
Confidence 111111123333 455577765433 345555544 5777655432222221 122223333 44 577776
Q ss_pred cCCCCCccCeEEEEECCC-CcEEEeecCCCCCCCCCcceEEEEEEeCCCcEEEEEcCCCCCCCCeEEEE--EccCCc
Q 005043 317 GGSRKKRHAETLIFDILK-GEWSVAITSPSSSVTSNKGFTLVLVQHKEKDFLVAFGGIKKEPSNQVEVL--SIEKNE 390 (717)
Q Consensus 317 G~~~~~~~~dv~~yD~~t-~~W~~l~~~p~~~~~~r~g~s~v~v~~~~~~~I~v~GG~~~~~~n~v~vy--d~~~~e 390 (717)
..+ +.+.+||+.. .+++.+...+... . ....+.+. +++..||+.+... +.+.+| |+.+.+
T Consensus 259 ~~~-----~~v~v~~~~~~g~~~~~~~~~~~~---~-~~~~~~~s-pdg~~l~v~~~~~----~~v~v~~~d~~tg~ 321 (347)
T 3hfq_A 259 RGY-----NTLAVFAVTADGHLTLIQQISTEG---D-FPRDFDLD-PTEAFVVVVNQNT----DNATLYARDLTSGK 321 (347)
T ss_dssp ETT-----TEEEEEEECGGGCEEEEEEEECSS---S-CCCEEEEC-TTSSEEEEEETTT----TEEEEEEECTTTCC
T ss_pred CCC-----CEEEEEEECCCCcEEEeEEEecCC---C-CcCeEEEC-CCCCEEEEEEcCC----CcEEEEEEeCCCCe
Confidence 532 4588888763 3555554322211 0 11123332 3344566554422 256777 444444
No 61
>3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A
Probab=96.80 E-value=0.54 Score=48.90 Aligned_cols=76 Identities=11% Similarity=0.121 Sum_probs=40.7
Q ss_pred CCcEEEEEcCCCCCCCCCeEEEEECCCCcEEEeecCCCCCCCCcceEEEEE--CC-EEEEEecCCCCCccCeEEEEEC--
Q 005043 258 DDKNLLIFGGSSKSKTLNDLYSLDFETMIWTRIKIRGFHPSPRAGCCGVLC--GT-KWYIAGGGSRKKRHAETLIFDI-- 332 (717)
Q Consensus 258 ~~~~lyV~GG~~~~~~~ndv~~yd~~t~~W~~v~~~g~~P~~R~~~sav~~--~~-~IyV~GG~~~~~~~~dv~~yD~-- 332 (717)
+++.+|+.+..+ +.+.+||+.++.+..+......+........+.+ ++ .||+.+.... +.+.+|++
T Consensus 221 dg~~l~v~~~~~-----~~v~v~~~~~g~~~~~~~~~~~~~~~~~~~~i~~spdg~~l~v~~~~~~----~~i~v~~~~~ 291 (361)
T 3scy_A 221 DGKFAYLINEIG-----GTVIAFRYADGMLDEIQTVAADTVNAQGSGDIHLSPDGKYLYASNRLKA----DGVAIFKVDE 291 (361)
T ss_dssp TSSEEEEEETTT-----CEEEEEEEETTEEEEEEEEESCSSCCCCEEEEEECTTSSEEEEEECSSS----CEEEEEEECT
T ss_pred CCCEEEEEcCCC-----CeEEEEEecCCceEEeEEEecCCCCCCCcccEEECCCCCEEEEECCCCC----CEEEEEEEcC
Confidence 445577765322 4688999888877665543222332222333333 44 5666553201 34666665
Q ss_pred CCCcEEEeec
Q 005043 333 LKGEWSVAIT 342 (717)
Q Consensus 333 ~t~~W~~l~~ 342 (717)
.+.+++.+..
T Consensus 292 ~~g~~~~~~~ 301 (361)
T 3scy_A 292 TNGTLTKVGY 301 (361)
T ss_dssp TTCCEEEEEE
T ss_pred CCCcEEEeeE
Confidence 4677776654
No 62
>3nok_A Glutaminyl cyclase; beta-propeller, cyclotransferase, pyrogl transferase; HET: MES DDQ; 1.65A {Myxococcus xanthus}
Probab=96.78 E-value=0.043 Score=56.25 Aligned_cols=159 Identities=9% Similarity=-0.110 Sum_probs=100.3
Q ss_pred cceEEEEECCEEEEEeccCCCCCCceEEEEEECCCCcEEEeeecCCCCCCceeeEEEEECCEEEEEccccCCCCCcCcEE
Q 005043 148 RGHSLISWGKKVLLVGGKTDSGSDRVSVWTFDTETECWSVVEAKGDIPVARSGHTVVRASSVLILFGGEDGKRRKLNDLH 227 (717)
Q Consensus 148 ~~hs~v~~~~~Iyv~GG~~~~~~~~~~v~~yD~~t~~W~~l~~~g~~P~~R~~hs~~~~~~~Lyv~GG~~~~~~~~~~v~ 227 (717)
+..++...++.+|+..|..+ .+.++|+.|++-..-- ++...++.+++..+++||+.... -+.++
T Consensus 56 ftqGL~~~~~~Ly~stG~~g------~v~~iD~~Tgkv~~~~----l~~~~FgeGit~~g~~Ly~ltw~------~~~v~ 119 (268)
T 3nok_A 56 FTQGLVFHQGHFFESTGHQG------TLRQLSLESAQPVWME----RLGNIFAEGLASDGERLYQLTWT------EGLLF 119 (268)
T ss_dssp CEEEEEEETTEEEEEETTTT------EEEECCSSCSSCSEEE----ECTTCCEEEEEECSSCEEEEESS------SCEEE
T ss_pred ccceEEEECCEEEEEcCCCC------EEEEEECCCCcEEeEE----CCCCcceeEEEEeCCEEEEEEcc------CCEEE
Confidence 34667777999999999743 3889999988643221 34445667788889999998542 36799
Q ss_pred EEEcCCCceEeccCCCCCCCCCcccEEEEECCcEEEEEcCCCCCCCCCeEEEEECCCCcEEEeecCCCCCCCCcc-eEEE
Q 005043 228 MFDLKSLTWLPLHCTGTGPSPRSNHVAALYDDKNLLIFGGSSKSKTLNDLYSLDFETMIWTRIKIRGFHPSPRAG-CCGV 306 (717)
Q Consensus 228 ~yD~~t~~W~~l~~~g~~P~~R~~~aa~~~~~~~lyV~GG~~~~~~~ndv~~yd~~t~~W~~v~~~g~~P~~R~~-~sav 306 (717)
+||+++.+-..- ++.+-.+.+++. +++.||+.-| .+.++.+|+++.+-..--..+..+.+... -.+.
T Consensus 120 V~D~~Tl~~~~t-----i~~~~eGwGLt~-Dg~~L~vSdG------s~~l~~iDp~T~~v~~~I~V~~~g~~v~~lNeLe 187 (268)
T 3nok_A 120 TWSGMPPQRERT-----TRYSGEGWGLCY-WNGKLVRSDG------GTMLTFHEPDGFALVGAVQVKLRGQPVELINELE 187 (268)
T ss_dssp EEETTTTEEEEE-----EECSSCCCCEEE-ETTEEEEECS------SSEEEEECTTTCCEEEEEECEETTEECCCEEEEE
T ss_pred EEECCcCcEEEE-----EeCCCceeEEec-CCCEEEEECC------CCEEEEEcCCCCeEEEEEEeCCCCcccccccccE
Confidence 999988764422 122223444554 4555888765 24799999998765433221111222211 1234
Q ss_pred EECCEEEEEecCCCCCccCeEEEEECCCCcEEE
Q 005043 307 LCGTKWYIAGGGSRKKRHAETLIFDILKGEWSV 339 (717)
Q Consensus 307 ~~~~~IyV~GG~~~~~~~~dv~~yD~~t~~W~~ 339 (717)
..+++||+-- .. .++|.+.|+.+.+-..
T Consensus 188 ~~dG~lyanv-w~----s~~I~vIDp~TG~V~~ 215 (268)
T 3nok_A 188 CANGVIYANI-WH----SSDVLEIDPATGTVVG 215 (268)
T ss_dssp EETTEEEEEE-TT----CSEEEEECTTTCBEEE
T ss_pred EeCCEEEEEE-CC----CCeEEEEeCCCCcEEE
Confidence 4588988533 11 3579999999986444
No 63
>2xbg_A YCF48-like protein; photosynthesis, photosystem II, beta-propeller, assembly FAC; 1.50A {Thermosynechococcus elongatus}
Probab=96.74 E-value=0.71 Score=48.17 Aligned_cols=251 Identities=11% Similarity=0.126 Sum_probs=128.8
Q ss_pred CCCeEEeeecCCCCCCcceeEEEEECCEEEEEcccCCCCCcccEEEEEcCCCceEEccccccCCCCCCCCCCCcccceEE
Q 005043 73 SENWMVLSIAGDKPIPRFNHAAAVIGNKMIVVGGESGNGLLDDVQVLNFDRFSWTAASSKLYLSPSSLPLKIPACRGHSL 152 (717)
Q Consensus 73 s~~W~~l~~~g~~P~~R~~haav~~~~~lyV~GG~~~~~~~~~v~~yd~~t~~W~~l~~~~~~~~~~~~~~~p~r~~hs~ 152 (717)
...|+.+......+ .....+.+..++.+|++|-. ..+++-.=...+|+.+... ...+.. .+.+
T Consensus 65 G~tW~~~~~~~~~~-~~~~~~i~~~~~~~~~~g~~------g~i~~S~DgG~tW~~~~~~---------~~~~~~-~~~i 127 (327)
T 2xbg_A 65 GQTWEPRTLVLDHS-DYRFNSVSFQGNEGWIVGEP------PIMLHTTDGGQSWSQIPLD---------PKLPGS-PRLI 127 (327)
T ss_dssp TSSCEECCCCCSCC-CCEEEEEEEETTEEEEEEET------TEEEEESSTTSSCEECCCC---------TTCSSC-EEEE
T ss_pred CCCCeECCCCCCCC-CccEEEEEecCCeEEEEECC------CeEEEECCCCCCceECccc---------cCCCCC-eEEE
Confidence 46899885211111 22334444557788887531 1344422234699998642 111222 2333
Q ss_pred E-EECCEEEEEeccCCCCCCceEEEEEECCCCcEEEeeecCCCCCCceeeEEEEE-CCEEEEEccccCCCCCcCcEEEEE
Q 005043 153 I-SWGKKVLLVGGKTDSGSDRVSVWTFDTETECWSVVEAKGDIPVARSGHTVVRA-SSVLILFGGEDGKRRKLNDLHMFD 230 (717)
Q Consensus 153 v-~~~~~Iyv~GG~~~~~~~~~~v~~yD~~t~~W~~l~~~g~~P~~R~~hs~~~~-~~~Lyv~GG~~~~~~~~~~v~~yD 230 (717)
+ .-++.+|+.|... .+++-+-...+|+.+.. +.+...+.++.. ++.+|++|- . ..+++-+
T Consensus 128 ~~~~~~~~~~~~~~g-------~v~~S~DgG~tW~~~~~----~~~~~~~~~~~~~~~~~~~~g~-~------G~~~~S~ 189 (327)
T 2xbg_A 128 KALGNGSAEMITNVG-------AIYRTKDSGKNWQALVQ----EAIGVMRNLNRSPSGEYVAVSS-R------GSFYSTW 189 (327)
T ss_dssp EEEETTEEEEEETTC-------CEEEESSTTSSEEEEEC----SCCCCEEEEEECTTSCEEEEET-T------SSEEEEE
T ss_pred EEECCCCEEEEeCCc-------cEEEEcCCCCCCEEeec----CCCcceEEEEEcCCCcEEEEEC-C------CcEEEEe
Confidence 3 3468888877421 36665545678999873 223334444444 456666652 1 2355543
Q ss_pred c-CCCceEeccCCCCCCCCCcccEEEEECCcEEEEEcCCCCCCCCCeEEEEECC-CCcEEEeecCCCCCCCCcceEEEEE
Q 005043 231 L-KSLTWLPLHCTGTGPSPRSNHVAALYDDKNLLIFGGSSKSKTLNDLYSLDFE-TMIWTRIKIRGFHPSPRAGCCGVLC 308 (717)
Q Consensus 231 ~-~t~~W~~l~~~g~~P~~R~~~aa~~~~~~~lyV~GG~~~~~~~ndv~~yd~~-t~~W~~v~~~g~~P~~R~~~sav~~ 308 (717)
- ...+|+.+. .+.+...+.++...+..+|+.+... .+++.+.+ ..+|+.+... ..+.....++++..
T Consensus 190 d~gG~tW~~~~----~~~~~~~~~~~~~~~g~~~~~~~~G------~~~~s~~D~G~tW~~~~~~-~~~~~~~~~~v~~~ 258 (327)
T 2xbg_A 190 EPGQTAWEPHN----RTTSRRLHNMGFTPDGRLWMIVNGG------KIAFSDPDNSENWGELLSP-LRRNSVGFLDLAYR 258 (327)
T ss_dssp CTTCSSCEEEE----CCSSSCEEEEEECTTSCEEEEETTT------EEEEEETTEEEEECCCBCT-TSSCCSCEEEEEES
T ss_pred CCCCCceeECC----CCCCCccceeEECCCCCEEEEeCCc------eEEEecCCCCCeeEeccCC-cccCCcceEEEEec
Confidence 2 257899884 2334445555554444477776421 35555433 6789887531 11222223343333
Q ss_pred -CCEEEEEecCCCCCccCeEEEEECCCCcEEEeecCCCCCCCCCcceEEEEEEeCCCcEEEEEcCCCCCCCCeEEEEEc
Q 005043 309 -GTKWYIAGGGSRKKRHAETLIFDILKGEWSVAITSPSSSVTSNKGFTLVLVQHKEKDFLVAFGGIKKEPSNQVEVLSI 386 (717)
Q Consensus 309 -~~~IyV~GG~~~~~~~~dv~~yD~~t~~W~~l~~~p~~~~~~r~g~s~v~v~~~~~~~I~v~GG~~~~~~n~v~vyd~ 386 (717)
++.+|++|+. ..+++-.-...+|+.+.... . .+...+.++... ++.+++.|..+ .++.++.
T Consensus 259 ~~~~~~~~g~~------g~i~~S~DgG~tW~~~~~~~-~--~~~~~~~v~~~~---~~~~~~~G~~G-----~i~~~~~ 320 (327)
T 2xbg_A 259 TPNEVWLAGGA------GALLCSQDGGQTWQQDVDVK-K--VPSNFYKILFFS---PDQGFILGQKG-----ILLRYVT 320 (327)
T ss_dssp SSSCEEEEEST------TCEEEESSTTSSCEECGGGT-T--SSSCCCEEEEEE---TTEEEEECSTT-----EEEEECC
T ss_pred CCCEEEEEeCC------CeEEEeCCCCcccEEcCccC-C--CCCCeEEEEEEC---CCceEEEcCCc-----eEEEEcC
Confidence 5788888762 13544433467999875321 1 111223443332 55666666532 5666654
No 64
>1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X
Probab=96.73 E-value=0.25 Score=51.81 Aligned_cols=247 Identities=8% Similarity=0.020 Sum_probs=119.1
Q ss_pred ECCEEEEEcccCCCCCcccEEEEEcCCCc-------eEEccccccCCCCCCCCCCCcccceEEEEE-C----C---EEEE
Q 005043 97 IGNKMIVVGGESGNGLLDDVQVLNFDRFS-------WTAASSKLYLSPSSLPLKIPACRGHSLISW-G----K---KVLL 161 (717)
Q Consensus 97 ~~~~lyV~GG~~~~~~~~~v~~yd~~t~~-------W~~l~~~~~~~~~~~~~~~p~r~~hs~v~~-~----~---~Iyv 161 (717)
+...+++.||.++ .+.+||+.+.. -..+.. ....-.+++.. + + .+++
T Consensus 24 ~~~~~l~s~~~dg-----~i~iw~~~~~~~~~~~~~~~~~~~-------------h~~~v~~~~~~~~~~~~g~~~~~l~ 85 (397)
T 1sq9_A 24 ACNSFTVSCSGDG-----YLKVWDNKLLDNENPKDKSYSHFV-------------HKSGLHHVDVLQAIERDAFELCLVA 85 (397)
T ss_dssp ECSSEEEEEETTS-----EEEEEESBCCTTCCGGGGEEEEEC-------------CTTCEEEEEEEEEEETTTEEEEEEE
T ss_pred ecCCeEEEEcCCC-----EEEEEECCCcccccCCCcceEEec-------------CCCcEEEEEEecccccCCccccEEE
Confidence 3446677776543 58889888765 222221 01111223322 4 5 7778
Q ss_pred EeccCCCCCCceEEEEEECCCCc------EEEeeecCCCCC---CceeeEEEEE-----CCEE-EEEccccCCCCCcCcE
Q 005043 162 VGGKTDSGSDRVSVWTFDTETEC------WSVVEAKGDIPV---ARSGHTVVRA-----SSVL-ILFGGEDGKRRKLNDL 226 (717)
Q Consensus 162 ~GG~~~~~~~~~~v~~yD~~t~~------W~~l~~~g~~P~---~R~~hs~~~~-----~~~L-yv~GG~~~~~~~~~~v 226 (717)
.|+.+. .+.+||+.+.. +..+.. .+. ...-.+++.. ++.. ++.|+.+ ..+
T Consensus 86 s~~~dg------~i~iw~~~~~~~~~~~~~~~~~~---~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~~~d------g~i 150 (397)
T 1sq9_A 86 TTSFSG------DLLFYRITREDETKKVIFEKLDL---LDSDMKKHSFWALKWGASNDRLLSHRLVATDVK------GTT 150 (397)
T ss_dssp EEETTS------CEEEEEEEECTTTCCEEEEEECC---SCTTGGGSCEEEEEEECCC----CEEEEEEETT------SCE
T ss_pred EEcCCC------CEEEEEccCCcccccccceeecc---cccccCCCcEEEEEEeeccCCCCceEEEEEeCC------CcE
Confidence 877632 47778877665 666652 110 1222233333 4555 7777654 347
Q ss_pred EEEEcCC------Cc---eE---eccC--CCCCCCCCcccEEEEECCcEEEEEcCCCCCCCCCeEEEEECCCCcEEEeec
Q 005043 227 HMFDLKS------LT---WL---PLHC--TGTGPSPRSNHVAALYDDKNLLIFGGSSKSKTLNDLYSLDFETMIWTRIKI 292 (717)
Q Consensus 227 ~~yD~~t------~~---W~---~l~~--~g~~P~~R~~~aa~~~~~~~lyV~GG~~~~~~~ndv~~yd~~t~~W~~v~~ 292 (717)
.+||+.+ .. |. .+.. .........-.++....+. +++.|+.++ .+..||+.+......-.
T Consensus 151 ~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~-~l~~~~~dg-----~i~i~d~~~~~~~~~~~ 224 (397)
T 1sq9_A 151 YIWKFHPFADESNSLTLNWSPTLELQGTVESPMTPSQFATSVDISERG-LIATGFNNG-----TVQISELSTLRPLYNFE 224 (397)
T ss_dssp EEEEEESSSSHHHHTTTCCCCEEEEEEEECCSSSSCCCCCEEEECTTS-EEEEECTTS-----EEEEEETTTTEEEEEEE
T ss_pred EEEeCCccccccccceeeccCcceeeeeeccccCCCCCceEEEECCCc-eEEEEeCCC-----cEEEEECCCCceeEEEe
Confidence 7888766 22 11 1100 0001112223345555566 777777643 59999998765443322
Q ss_pred CCC-C-CCCCcceEEEEE-CCEEEEEecCCCCCccCeEEEEECCCCcEEEeecCCCCCC---C----CCcceEEEEEEeC
Q 005043 293 RGF-H-PSPRAGCCGVLC-GTKWYIAGGGSRKKRHAETLIFDILKGEWSVAITSPSSSV---T----SNKGFTLVLVQHK 362 (717)
Q Consensus 293 ~g~-~-P~~R~~~sav~~-~~~IyV~GG~~~~~~~~dv~~yD~~t~~W~~l~~~p~~~~---~----~r~g~s~v~v~~~ 362 (717)
... . +....-.+++.. ++.+++.|+.++. ...+.+||+.+..-......+.... . .......+.+..
T Consensus 225 ~~~~h~~~~~~i~~i~~~~~~~~l~~~~~d~~--~g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~- 301 (397)
T 1sq9_A 225 SQHSMINNSNSIRSVKFSPQGSLLAIAHDSNS--FGCITLYETEFGERIGSLSVPTHSSQASLGEFAHSSWVMSLSFND- 301 (397)
T ss_dssp CCC---CCCCCEEEEEECSSTTEEEEEEEETT--EEEEEEEETTTCCEEEEECBC--------CCBSBSSCEEEEEECS-
T ss_pred ccccccccCCccceEEECCCCCEEEEEecCCC--CceEEEEECCCCcccceeccCcccccccccccccCCcEEEEEECC-
Confidence 100 0 001122222222 5677777765410 1358899998765333221110000 0 112223333322
Q ss_pred CCcEEEEEcCCCCCCCCeEEEEEccCCc
Q 005043 363 EKDFLVAFGGIKKEPSNQVEVLSIEKNE 390 (717)
Q Consensus 363 ~~~~I~v~GG~~~~~~n~v~vyd~~~~e 390 (717)
++.+++.|+.++ .|.+||+.+.+
T Consensus 302 -~~~~l~~~~~dg----~i~iwd~~~~~ 324 (397)
T 1sq9_A 302 -SGETLCSAGWDG----KLRFWDVKTKE 324 (397)
T ss_dssp -SSSEEEEEETTS----EEEEEETTTTE
T ss_pred -CCCEEEEEeCCC----eEEEEEcCCCc
Confidence 334566666432 68888887665
No 65
>3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae}
Probab=96.73 E-value=0.073 Score=55.17 Aligned_cols=200 Identities=14% Similarity=0.124 Sum_probs=104.2
Q ss_pred CEEEEEcccCCCCCcccEEEEEcCCCceEEccccccCCCCCCCCCCCcccceEEEEE-C--CEEEEEeccCCCCCCceEE
Q 005043 99 NKMIVVGGESGNGLLDDVQVLNFDRFSWTAASSKLYLSPSSLPLKIPACRGHSLISW-G--KKVLLVGGKTDSGSDRVSV 175 (717)
Q Consensus 99 ~~lyV~GG~~~~~~~~~v~~yd~~t~~W~~l~~~~~~~~~~~~~~~p~r~~hs~v~~-~--~~Iyv~GG~~~~~~~~~~v 175 (717)
+.+++.|+.++ .+.+||+.+..|..+... ......-.+++.. + +.+++.|+.+ ..+
T Consensus 69 ~~~l~s~~~dg-----~v~iwd~~~~~~~~~~~~----------~~~~~~v~~~~~~~~~~~~~l~~~~~d------~~i 127 (379)
T 3jrp_A 69 GTILASCSYDG-----KVLIWKEENGRWSQIAVH----------AVHSASVNSVQWAPHEYGPLLLVASSD------GKV 127 (379)
T ss_dssp CSEEEEEETTS-----CEEEEEEETTEEEEEEEE----------CCCSSCEEEEEECCGGGCSEEEEEETT------SEE
T ss_pred CCEEEEeccCC-----EEEEEEcCCCceeEeeee----------cCCCcceEEEEeCCCCCCCEEEEecCC------CcE
Confidence 56777777653 588999999988776552 1111112233333 3 5677777753 268
Q ss_pred EEEECCCCcE-EEeeecCCCCCCceeeEEEEE--------------CCEEEEEccccCCCCCcCcEEEEEcCCCc--eEe
Q 005043 176 WTFDTETECW-SVVEAKGDIPVARSGHTVVRA--------------SSVLILFGGEDGKRRKLNDLHMFDLKSLT--WLP 238 (717)
Q Consensus 176 ~~yD~~t~~W-~~l~~~g~~P~~R~~hs~~~~--------------~~~Lyv~GG~~~~~~~~~~v~~yD~~t~~--W~~ 238 (717)
.+||+.+... ...... .....-.+++.. ++.+++.|+.++ .+.+||+.+.. |..
T Consensus 128 ~v~d~~~~~~~~~~~~~---~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg------~i~i~d~~~~~~~~~~ 198 (379)
T 3jrp_A 128 SVVEFKENGTTSPIIID---AHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADN------LVKIWKYNSDAQTYVL 198 (379)
T ss_dssp EEEECCTTSCCCEEEEE---CCTTCEEEEEECCCC----------CTTCEEEEEETTS------CEEEEEEETTTTEEEE
T ss_pred EEEecCCCCceeeEEec---CCCCceEEEEEcCccccccccccCCCCCCEEEEEeCCC------eEEEEEecCCCcceee
Confidence 8888877631 111110 111111222222 367778877654 47788876543 443
Q ss_pred ccCCCCCCC-CCcccEEEEECC---cEEEEEcCCCCCCCCCeEEEEECCCCc--EEEeecCCCCCCCCcceEEEE-ECCE
Q 005043 239 LHCTGTGPS-PRSNHVAALYDD---KNLLIFGGSSKSKTLNDLYSLDFETMI--WTRIKIRGFHPSPRAGCCGVL-CGTK 311 (717)
Q Consensus 239 l~~~g~~P~-~R~~~aa~~~~~---~~lyV~GG~~~~~~~ndv~~yd~~t~~--W~~v~~~g~~P~~R~~~sav~-~~~~ 311 (717)
+. .+.. ...-.+++...+ ..+++.|+.++ .+.+||+.+.. +...... .......-.+++. -+++
T Consensus 199 ~~---~~~~h~~~v~~~~~sp~~~~~~~l~s~~~dg-----~i~iwd~~~~~~~~~~~~~~-~~~~~~~v~~~~~s~~g~ 269 (379)
T 3jrp_A 199 ES---TLEGHSDWVRDVAWSPTVLLRSYLASVSQDR-----TCIIWTQDNEQGPWKKTLLK-EEKFPDVLWRASWSLSGN 269 (379)
T ss_dssp EE---EECCCSSCEEEEEECCCCSSSEEEEEEETTS-----CEEEEEESSTTSCCEEEESS-SSCCSSCEEEEEECSSSC
T ss_pred EE---EEecccCcEeEEEECCCCCCCCeEEEEeCCC-----EEEEEeCCCCCccceeeeec-cccCCCcEEEEEEcCCCC
Confidence 32 1111 111223444444 44777777654 38888887653 2211111 0011222222222 2677
Q ss_pred EEEEecCCCCCccCeEEEEECC-CCcEEEeec
Q 005043 312 WYIAGGGSRKKRHAETLIFDIL-KGEWSVAIT 342 (717)
Q Consensus 312 IyV~GG~~~~~~~~dv~~yD~~-t~~W~~l~~ 342 (717)
++++|+.++. +.+||+. ...|..+..
T Consensus 270 ~l~~~~~dg~-----i~iw~~~~~~~~~~~~~ 296 (379)
T 3jrp_A 270 VLALSGGDNK-----VTLWKENLEGKWEPAGE 296 (379)
T ss_dssp CEEEEESSSS-----EEEEEEEETTEEEEEEE
T ss_pred EEEEecCCCc-----EEEEeCCCCCccccccc
Confidence 7777776543 7788876 567887763
No 66
>3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae}
Probab=96.72 E-value=0.034 Score=65.40 Aligned_cols=239 Identities=10% Similarity=0.056 Sum_probs=119.9
Q ss_pred CCEEEEEcccCCCCCcccEEEEEcCCCceEEccccccCCCCCCCCCCCcccceEEEEE-C--CEEEEEeccCCCCCCceE
Q 005043 98 GNKMIVVGGESGNGLLDDVQVLNFDRFSWTAASSKLYLSPSSLPLKIPACRGHSLISW-G--KKVLLVGGKTDSGSDRVS 174 (717)
Q Consensus 98 ~~~lyV~GG~~~~~~~~~v~~yd~~t~~W~~l~~~~~~~~~~~~~~~p~r~~hs~v~~-~--~~Iyv~GG~~~~~~~~~~ 174 (717)
++.+++.||.++ .+.+||+.+..+..+... ......-.+++.. + +.+++.||.++ .
T Consensus 20 dg~~latg~~dg-----~I~vwd~~~~~~~~~~~l----------~~h~~~V~~l~~s~~~~~~~l~s~s~Dg------~ 78 (753)
T 3jro_A 20 YGKRLATCSSDK-----TIKIFEVEGETHKLIDTL----------TGHEGPVWRVDWAHPKFGTILASCSYDG------K 78 (753)
T ss_dssp SSCCEEEEETTT-----EEEEEEEETTEEEEEEEE----------CCCSSCEEEEEECCTTSCSEEEEEETTS------C
T ss_pred CCCeEEEEECCC-----cEEEEecCCCCCccceec----------cCCcCceEEEEecCCCCCCEEEEEeCCC------e
Confidence 355666666543 588888887777666542 1111111233332 3 66777777642 5
Q ss_pred EEEEECCCCcEEEeeecCCCCCCceeeEEEEE-C--CEEEEEccccCCCCCcCcEEEEEcCCCceEeccCCCCCCCCCcc
Q 005043 175 VWTFDTETECWSVVEAKGDIPVARSGHTVVRA-S--SVLILFGGEDGKRRKLNDLHMFDLKSLTWLPLHCTGTGPSPRSN 251 (717)
Q Consensus 175 v~~yD~~t~~W~~l~~~g~~P~~R~~hs~~~~-~--~~Lyv~GG~~~~~~~~~~v~~yD~~t~~W~~l~~~g~~P~~R~~ 251 (717)
+.+||+.++.|..+.... .....-.+++.. + +.+++.||.++ .+.+||+.+..-.........+ ..-
T Consensus 79 I~vwd~~~~~~~~~~~~~--~h~~~V~~v~~sp~~~~~~l~sgs~dg------~I~vwdl~~~~~~~~~~~~~~~--~~v 148 (753)
T 3jro_A 79 VLIWKEENGRWSQIAVHA--VHSASVNSVQWAPHEYGPLLLVASSDG------KVSVVEFKENGTTSPIIIDAHA--IGV 148 (753)
T ss_dssp EEEEEEETTEEEEEEEEC--CCSSCEEEEEECCGGGCSEEEEEETTS------EEEEEECCSSSCCCCEEEECCS--SCE
T ss_pred EEEEECCCCccccccccc--CCCCCeEEEEECCCCCCCEEEEEeCCC------cEEEEEeecCCCcceeEeecCC--Cce
Confidence 888898888887665321 111222233332 2 66778877543 4788888765221111000111 111
Q ss_pred cEEEEEC--------------CcEEEEEcCCCCCCCCCeEEEEECCCC--cEEEeecCCCCCCCCcceEEEEE-C---CE
Q 005043 252 HVAALYD--------------DKNLLIFGGSSKSKTLNDLYSLDFETM--IWTRIKIRGFHPSPRAGCCGVLC-G---TK 311 (717)
Q Consensus 252 ~aa~~~~--------------~~~lyV~GG~~~~~~~ndv~~yd~~t~--~W~~v~~~g~~P~~R~~~sav~~-~---~~ 311 (717)
.++.... +. +++.|+.++ .|..||+.+. .+..+.... .....-.+++.. + +.
T Consensus 149 ~~l~~~p~~~~~~~~~~~~~d~~-~l~sgs~dg-----~I~iwd~~~~~~~~~~~~~~~--~h~~~V~~l~~sp~~~~~~ 220 (753)
T 3jro_A 149 NSASWAPATIEEDGEHNGTKESR-KFVTGGADN-----LVKIWKYNSDAQTYVLESTLE--GHSDWVRDVAWSPTVLLRS 220 (753)
T ss_dssp EEEEECCCC---------CGGGC-CEEEEETTS-----CEEEEEEETTTTEEEEEEEEC--CCSSCEEEEEECCCCSSSE
T ss_pred EEEEecCcccccccccccCCCCC-EEEEEECCC-----eEEEEeccCCcccceeeeeec--CCCCcEEEEEeccCCCCCC
Confidence 1222222 34 667777654 3788887543 444443321 111112222222 4 78
Q ss_pred EEEEecCCCCCccCeEEEEECCCCc--EEEeecCCCCCCCCCcceEEEEEEeCCCcEEEEEcCCCCCCCCeEEEEEccCC
Q 005043 312 WYIAGGGSRKKRHAETLIFDILKGE--WSVAITSPSSSVTSNKGFTLVLVQHKEKDFLVAFGGIKKEPSNQVEVLSIEKN 389 (717)
Q Consensus 312 IyV~GG~~~~~~~~dv~~yD~~t~~--W~~l~~~p~~~~~~r~g~s~v~v~~~~~~~I~v~GG~~~~~~n~v~vyd~~~~ 389 (717)
+++.||.++. +.+||+.+.. +..... . ..........+.+.. ++.+++.||.++ .|.+|++...
T Consensus 221 ~l~s~s~Dg~-----I~iwd~~~~~~~~~~~~~-~--~~~~~~~v~~l~~sp--dg~~l~s~s~Dg----~I~vwd~~~~ 286 (753)
T 3jro_A 221 YLASVSQDRT-----CIIWTQDNEQGPWKKTLL-K--EEKFPDVLWRASWSL--SGNVLALSGGDN----KVTLWKENLE 286 (753)
T ss_dssp EEEEEESSSC-----EEEEEESSSSSCCBCCBS-S--SSCCSSCCCCEEECT--TTCCEEEECSSS----CEECCBCCSS
T ss_pred EEEEEecCCE-----EEEecCCCCCCcceeEEe-c--cCCCCCceEEEEEcC--CCCEEEEEcCCC----EEEEEecCCC
Confidence 8889887654 8888887642 111110 0 000111122233322 444667777543 4788888743
No 67
>1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae}
Probab=96.69 E-value=0.082 Score=55.66 Aligned_cols=146 Identities=10% Similarity=0.052 Sum_probs=77.0
Q ss_pred CCEEEEEeccCCCCCCceEEEEEECCCCcEEEeeecCCCCCCceeeEEEEE-CCEEEEEccccCCCCCcCcEEEEEcCCC
Q 005043 156 GKKVLLVGGKTDSGSDRVSVWTFDTETECWSVVEAKGDIPVARSGHTVVRA-SSVLILFGGEDGKRRKLNDLHMFDLKSL 234 (717)
Q Consensus 156 ~~~Iyv~GG~~~~~~~~~~v~~yD~~t~~W~~l~~~g~~P~~R~~hs~~~~-~~~Lyv~GG~~~~~~~~~~v~~yD~~t~ 234 (717)
.+..++.|+.. ..+.+||+.+..-...-. .....-.+++.. ++.+++.|+.++ .+.+||+.+.
T Consensus 216 ~~~~~~~~~~~------g~i~~~d~~~~~~~~~~~----~~~~~i~~~~~~~~~~~l~~~~~d~------~i~i~d~~~~ 279 (425)
T 1r5m_A 216 DDDKFVIPGPK------GAIFVYQITEKTPTGKLI----GHHGPISVLEFNDTNKLLLSASDDG------TLRIWHGGNG 279 (425)
T ss_dssp ETTEEEEECGG------GCEEEEETTCSSCSEEEC----CCSSCEEEEEEETTTTEEEEEETTS------CEEEECSSSB
T ss_pred CCCEEEEEcCC------CeEEEEEcCCCceeeeec----cCCCceEEEEECCCCCEEEEEcCCC------EEEEEECCCC
Confidence 34446666653 258999988764322111 111112233333 456677776443 4888888765
Q ss_pred ceEeccCCCCCCCCCcccEEEEECCcEEEEEcCCCCCCCCCeEEEEECCCCcEEEeecCCCCCCCCcceEEEEE-CCEEE
Q 005043 235 TWLPLHCTGTGPSPRSNHVAALYDDKNLLIFGGSSKSKTLNDLYSLDFETMIWTRIKIRGFHPSPRAGCCGVLC-GTKWY 313 (717)
Q Consensus 235 ~W~~l~~~g~~P~~R~~~aa~~~~~~~lyV~GG~~~~~~~ndv~~yd~~t~~W~~v~~~g~~P~~R~~~sav~~-~~~Iy 313 (717)
.....- . .....-.+++...+. +++.|+.++ .+.+||+.+..-...... ....-.+++.. ++.++
T Consensus 280 ~~~~~~---~-~~~~~i~~~~~~~~~-~l~~~~~d~-----~i~i~d~~~~~~~~~~~~----~~~~i~~~~~s~~~~~l 345 (425)
T 1r5m_A 280 NSQNCF---Y-GHSQSIVSASWVGDD-KVISCSMDG-----SVRLWSLKQNTLLALSIV----DGVPIFAGRISQDGQKY 345 (425)
T ss_dssp SCSEEE---C-CCSSCEEEEEEETTT-EEEEEETTS-----EEEEEETTTTEEEEEEEC----TTCCEEEEEECTTSSEE
T ss_pred ccceEe---c-CCCccEEEEEECCCC-EEEEEeCCC-----cEEEEECCCCcEeEeccc----CCccEEEEEEcCCCCEE
Confidence 432221 0 112223345555566 666676543 599999987664433221 11112222222 56777
Q ss_pred EEecCCCCCccCeEEEEECCCCc
Q 005043 314 IAGGGSRKKRHAETLIFDILKGE 336 (717)
Q Consensus 314 V~GG~~~~~~~~dv~~yD~~t~~ 336 (717)
+.|+.++ .+.+||+.+..
T Consensus 346 ~~~~~dg-----~i~i~~~~~~~ 363 (425)
T 1r5m_A 346 AVAFMDG-----QVNVYDLKKLN 363 (425)
T ss_dssp EEEETTS-----CEEEEECHHHH
T ss_pred EEEECCC-----eEEEEECCCCc
Confidence 7777554 48889887654
No 68
>4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A
Probab=96.68 E-value=0.39 Score=51.49 Aligned_cols=224 Identities=14% Similarity=0.130 Sum_probs=108.5
Q ss_pred cEEEEEcCCCceEEccccccCCCCCCCCCCCcccceEEEEE-CCEEEEEeccCCCCCCceEEEEEECCCCcEEEeeecCC
Q 005043 115 DVQVLNFDRFSWTAASSKLYLSPSSLPLKIPACRGHSLISW-GKKVLLVGGKTDSGSDRVSVWTFDTETECWSVVEAKGD 193 (717)
Q Consensus 115 ~v~~yd~~t~~W~~l~~~~~~~~~~~~~~~p~r~~hs~v~~-~~~Iyv~GG~~~~~~~~~~v~~yD~~t~~W~~l~~~g~ 193 (717)
.|+++|..++....+-.. ......-.+++.. ++.+++.|+.+. .+.+||+.+++-.....
T Consensus 126 tV~lWd~~tg~~~~~~~~----------~~~~~~V~sv~fspdg~~lasgs~Dg------~v~iWd~~~~~~~~~~~--- 186 (420)
T 4gga_A 126 SVYLWSASSGDILQLLQM----------EQPGEYISSVAWIKEGNYLAVGTSSA------EVQLWDVQQQKRLRNMT--- 186 (420)
T ss_dssp EEEEEETTTCCEEEEEEC----------CSTTCCEEEEEECTTSSEEEEEETTS------CEEEEETTTTEEEEEEC---
T ss_pred EEEEEECCCCCEEEEEEe----------cCCCCcEEEEEECCCCCEEEEEECCC------eEEEEEcCCCcEEEEEe---
Confidence 689999998876554331 1111111222222 567777887642 58889998876433221
Q ss_pred CCCCceeeEEEEECCEEEEEccccCCCCCcCcEEEEEcCCCceEeccCCCCCCCCCcccEEEEECCcEEEEEcCCCCCCC
Q 005043 194 IPVARSGHTVVRASSVLILFGGEDGKRRKLNDLHMFDLKSLTWLPLHCTGTGPSPRSNHVAALYDDKNLLIFGGSSKSKT 273 (717)
Q Consensus 194 ~P~~R~~hs~~~~~~~Lyv~GG~~~~~~~~~~v~~yD~~t~~W~~l~~~g~~P~~R~~~aa~~~~~~~lyV~GG~~~~~~ 273 (717)
....+ ..+...++.+++.|+.+. .+..+|............+ ............+...++.|+.++
T Consensus 187 ~h~~~--v~~~s~~~~~l~sgs~d~------~i~~~d~~~~~~~~~~~~~---h~~~~~~~~~~~~g~~l~s~~~D~--- 252 (420)
T 4gga_A 187 SHSAR--VGSLSWNSYILSSGSRSG------HIHHHDVRVAEHHVATLSG---HSQEVCGLRWAPDGRHLASGGNDN--- 252 (420)
T ss_dssp CCSSC--EEEEEEETTEEEEEETTS------EEEEEETTSSSCEEEEEEC---CSSCEEEEEECTTSSEEEEEETTS---
T ss_pred CCCCc--eEEEeeCCCEEEEEeCCC------ceeEeeecccceeeEEecc---cccceeeeeecCCCCeeeeeeccc---
Confidence 11122 223345667777776543 4677776654332211101 111111222222322566666543
Q ss_pred CCeEEEEECCCCc--EEEeecCCCCCCCCcc-eEEEEE--CCEEEEEecCCCCCccCeEEEEECCCCcEEEeecCCCCCC
Q 005043 274 LNDLYSLDFETMI--WTRIKIRGFHPSPRAG-CCGVLC--GTKWYIAGGGSRKKRHAETLIFDILKGEWSVAITSPSSSV 348 (717)
Q Consensus 274 ~ndv~~yd~~t~~--W~~v~~~g~~P~~R~~-~sav~~--~~~IyV~GG~~~~~~~~dv~~yD~~t~~W~~l~~~p~~~~ 348 (717)
.+.+||..+.. +..+... ...... .+.+.. +..+++.||.+.+ ..|.+||+.+..-......
T Consensus 253 --~v~i~~~~~~~~~~~~~~~~---~~~~~~V~~~~~~p~~~~~la~~~gs~D---~~I~iwd~~t~~~~~~~~~----- 319 (420)
T 4gga_A 253 --LVNVWPSAPGEGGWVPLQTF---TQHQGAVKAVAWCPWQSNVLATGGGTSD---RHIRIWNVCSGACLSAVDA----- 319 (420)
T ss_dssp --CEEEEESSCCSSCSCCSEEE---CCCSSCEEEEEECTTCTTEEEEEECTTT---CEEEEEETTTTEEEEEEEC-----
T ss_pred --cceEEeeccccccceeeeee---cccCCceeeeeeCCCcccEEEEEeecCC---CEEEEEeCCccccceeecc-----
Confidence 47778876543 1111111 111111 122222 4445555443222 3588999988765443311
Q ss_pred CCCcceEEEEEEeCCCcEEEEEcCCCCCCCCeEEEEEccCCc
Q 005043 349 TSNKGFTLVLVQHKEKDFLVAFGGIKKEPSNQVEVLSIEKNE 390 (717)
Q Consensus 349 ~~r~g~s~v~v~~~~~~~I~v~GG~~~~~~n~v~vyd~~~~e 390 (717)
........+ ...+..+++.+|.... .|.+||..+.+
T Consensus 320 --~~~v~~~~~-~~~~~~lv~~sg~~d~---~I~iwd~~~~~ 355 (420)
T 4gga_A 320 --HSQVCSILW-SPHYKELISGHGFAQN---QLVIWKYPTMA 355 (420)
T ss_dssp --SSCEEEEEE-ETTTTEEEEEECTTTC---CEEEEETTTCC
T ss_pred --ccceeeeee-cCCCCeEEEEEecCCC---EEEEEECCCCc
Confidence 111222223 3445666666665332 68889887665
No 69
>1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B*
Probab=96.67 E-value=0.32 Score=50.59 Aligned_cols=190 Identities=12% Similarity=0.077 Sum_probs=96.7
Q ss_pred CCEEEEEcccCCCCCcccEEEEEcCCCc--eEEccccccCCCCCCCCCCCcccceEEEE-ECCEEEEEeccCCCCCCceE
Q 005043 98 GNKMIVVGGESGNGLLDDVQVLNFDRFS--WTAASSKLYLSPSSLPLKIPACRGHSLIS-WGKKVLLVGGKTDSGSDRVS 174 (717)
Q Consensus 98 ~~~lyV~GG~~~~~~~~~v~~yd~~t~~--W~~l~~~~~~~~~~~~~~~p~r~~hs~v~-~~~~Iyv~GG~~~~~~~~~~ 174 (717)
++.+++.||.++ .+.+||+.+.. ....... ......-.++.. .++. ++.|+.+ ..
T Consensus 108 ~~~~l~s~~~d~-----~v~iw~~~~~~~~~~~~~~~----------~~h~~~v~~~~~~~~~~-l~s~s~d------~~ 165 (340)
T 1got_B 108 SGNYVACGGLDN-----ICSIYNLKTREGNVRVSREL----------AGHTGYLSCCRFLDDNQ-IVTSSGD------TT 165 (340)
T ss_dssp TSSEEEEEETTC-----EEEEEETTTCSBSCEEEEEE----------ECCSSCEEEEEEEETTE-EEEEETT------SC
T ss_pred CCCEEEEEeCCC-----eEEEEECccCCCcceeEEEe----------cCCCccEEEEEECCCCc-EEEEECC------Cc
Confidence 456777777653 57888887642 1111110 000111122222 3455 4555543 25
Q ss_pred EEEEECCCCcEEEeeecCCCCCCceeeEEEEE-CCEEEEEccccCCCCCcCcEEEEEcCCCceEeccCCCCCCCCCcccE
Q 005043 175 VWTFDTETECWSVVEAKGDIPVARSGHTVVRA-SSVLILFGGEDGKRRKLNDLHMFDLKSLTWLPLHCTGTGPSPRSNHV 253 (717)
Q Consensus 175 v~~yD~~t~~W~~l~~~g~~P~~R~~hs~~~~-~~~Lyv~GG~~~~~~~~~~v~~yD~~t~~W~~l~~~g~~P~~R~~~a 253 (717)
+.+||+.+..-...-. .....-.+++.. ++.+++.|+.++ .+.+||+.+..-...- . .....-.+
T Consensus 166 i~~wd~~~~~~~~~~~----~h~~~v~~~~~~~~~~~l~sg~~d~------~v~~wd~~~~~~~~~~---~-~h~~~v~~ 231 (340)
T 1got_B 166 CALWDIETGQQTTTFT----GHTGDVMSLSLAPDTRLFVSGACDA------SAKLWDVREGMCRQTF---T-GHESDINA 231 (340)
T ss_dssp EEEEETTTTEEEEEEC----CCSSCEEEEEECTTSSEEEEEETTS------CEEEEETTTCSEEEEE---C-CCSSCEEE
T ss_pred EEEEECCCCcEEEEEc----CCCCceEEEEECCCCCEEEEEeCCC------cEEEEECCCCeeEEEE---c-CCcCCEEE
Confidence 8889998876443221 111112233332 467788887654 4788898776533221 0 01111223
Q ss_pred EEEECCcEEEEEcCCCCCCCCCeEEEEECCCCcEEEeecCCCCCCCCcceEEEEE--CCEEEEEecCCCCCccCeEEEEE
Q 005043 254 AALYDDKNLLIFGGSSKSKTLNDLYSLDFETMIWTRIKIRGFHPSPRAGCCGVLC--GTKWYIAGGGSRKKRHAETLIFD 331 (717)
Q Consensus 254 a~~~~~~~lyV~GG~~~~~~~ndv~~yd~~t~~W~~v~~~g~~P~~R~~~sav~~--~~~IyV~GG~~~~~~~~dv~~yD 331 (717)
++...+..+++.|+.++ .+..||+.+..-...-.. +........+.+ ++++++.|+.++ .+.+||
T Consensus 232 v~~~p~~~~l~s~s~d~-----~v~iwd~~~~~~~~~~~~---~~~~~~v~~~~~s~~g~~l~~g~~d~-----~i~vwd 298 (340)
T 1got_B 232 ICFFPNGNAFATGSDDA-----TCRLFDLRADQELMTYSH---DNIICGITSVSFSKSGRLLLAGYDDF-----NCNVWD 298 (340)
T ss_dssp EEECTTSSEEEEEETTS-----CEEEEETTTTEEEEEECC---TTCCSCEEEEEECTTSSEEEEEETTS-----EEEEEE
T ss_pred EEEcCCCCEEEEEcCCC-----cEEEEECCCCcEEEEEcc---CCcccceEEEEECCCCCEEEEECCCC-----eEEEEE
Confidence 33444443777777654 489999987653322211 112222333333 677888887653 488999
Q ss_pred CCCCc
Q 005043 332 ILKGE 336 (717)
Q Consensus 332 ~~t~~ 336 (717)
..+..
T Consensus 299 ~~~~~ 303 (340)
T 1got_B 299 ALKAD 303 (340)
T ss_dssp TTTCC
T ss_pred cccCc
Confidence 87654
No 70
>1pjx_A Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotriesterase (PTE), nitrogen-calcium coordination, BET propeller; HET: ME2 MES PGE; 0.85A {Loligo vulgaris} SCOP: b.68.6.1 PDB: 1e1a_A* 2gvv_A* 2gvw_A 3byc_A 3kgg_A 3o4p_A* 3li3_A 2gvx_A 2gvu_A 3li4_A 2iaq_A 3li5_A* 2iao_A 2iap_A 2iau_A 2iax_A 2iaw_A 2ias_A 2iat_A 2iar_A ...
Probab=96.66 E-value=0.32 Score=49.19 Aligned_cols=249 Identities=10% Similarity=0.057 Sum_probs=121.7
Q ss_pred CCEEEEEccc--CCCCCcccEEEEEcCCCceEEccccccCCCCCCCCCCCcccceEEEEE-C-CEEEEEeccCCCCCCce
Q 005043 98 GNKMIVVGGE--SGNGLLDDVQVLNFDRFSWTAASSKLYLSPSSLPLKIPACRGHSLISW-G-KKVLLVGGKTDSGSDRV 173 (717)
Q Consensus 98 ~~~lyV~GG~--~~~~~~~~v~~yd~~t~~W~~l~~~~~~~~~~~~~~~p~r~~hs~v~~-~-~~Iyv~GG~~~~~~~~~ 173 (717)
++.+|+..+. ........+++||+.+.++..+.... .......-++++.. + +++|+.+.. +
T Consensus 28 ~g~l~~~~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~--------~~~~~~~~~~i~~~~~~g~l~v~~~~-------~ 92 (314)
T 1pjx_A 28 NGDFYIVAPEVEVNGKPAGEILRIDLKTGKKTVICKPE--------VNGYGGIPAGCQCDRDANQLFVADMR-------L 92 (314)
T ss_dssp TSCEEEEETTCEETTEECCEEEEECTTTCCEEEEECCE--------ETTEECCEEEEEECSSSSEEEEEETT-------T
T ss_pred CCCEEEEEeccccCCCCCCEEEEEeCCCCcEEEEEecc--------cCCCCCCCceEEEecCCCcEEEEECC-------C
Confidence 5678888110 00011236899999888887653200 00001112344443 4 688887542 1
Q ss_pred EEEEEECCCCcEEEe-eecCCCCCCceeeEEEEE-CCEEEEEccccC---------CCCCcCcEEEEEcCCCceEeccCC
Q 005043 174 SVWTFDTETECWSVV-EAKGDIPVARSGHTVVRA-SSVLILFGGEDG---------KRRKLNDLHMFDLKSLTWLPLHCT 242 (717)
Q Consensus 174 ~v~~yD~~t~~W~~l-~~~g~~P~~R~~hs~~~~-~~~Lyv~GG~~~---------~~~~~~~v~~yD~~t~~W~~l~~~ 242 (717)
.+++||+. ++...+ ...........-+.++.. ++.||+...... .......+++||+. .+...+..
T Consensus 93 ~l~~~d~~-g~~~~~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-g~~~~~~~- 169 (314)
T 1pjx_A 93 GLLVVQTD-GTFEEIAKKDSEGRRMQGCNDCAFDYEGNLWITAPAGEVAPADYTRSMQEKFGSIYCFTTD-GQMIQVDT- 169 (314)
T ss_dssp EEEEEETT-SCEEECCSBCTTSCBCBCCCEEEECTTSCEEEEECBCBCTTSCCCBTTSSSCEEEEEECTT-SCEEEEEE-
T ss_pred CEEEEeCC-CCEEEEEeccCCCccccCCcCEEECCCCCEEEEecCcccccccccccccCCCCeEEEECCC-CCEEEecc-
Confidence 59999998 777655 321110111122334443 568888654321 11123579999987 55554321
Q ss_pred CCCCCCCcccEEEEE----CCc-EEEEEcCCCCCCCCCeEEEEECC-CCcEEEeecCCCCCCC--CcceEEEEE-CCEEE
Q 005043 243 GTGPSPRSNHVAALY----DDK-NLLIFGGSSKSKTLNDLYSLDFE-TMIWTRIKIRGFHPSP--RAGCCGVLC-GTKWY 313 (717)
Q Consensus 243 g~~P~~R~~~aa~~~----~~~-~lyV~GG~~~~~~~ndv~~yd~~-t~~W~~v~~~g~~P~~--R~~~sav~~-~~~Iy 313 (717)
.... -...+.. .+. .+|+..... +.+++||+. ++.+.........+.. ..-..++.. ++.+|
T Consensus 170 -~~~~---~~~i~~~~~~d~dg~~l~v~~~~~-----~~i~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~i~~d~~G~l~ 240 (314)
T 1pjx_A 170 -AFQF---PNGIAVRHMNDGRPYQLIVAETPT-----KKLWSYDIKGPAKIENKKVWGHIPGTHEGGADGMDFDEDNNLL 240 (314)
T ss_dssp -EESS---EEEEEEEECTTSCEEEEEEEETTT-----TEEEEEEEEETTEEEEEEEEEECCCCSSCEEEEEEEBTTCCEE
T ss_pred -CCCC---cceEEEecccCCCCCEEEEEECCC-----CeEEEEECCCCCccccceEEEECCCCCCCCCCceEECCCCCEE
Confidence 1111 1233344 333 577765332 469999976 4544322111001111 111223332 57888
Q ss_pred EEecCCCCCccCeEEEEECCCCcE-EEeecCCCCCCCCCcceEEEEEEeCCCcEEEEEcCCCCCCCCeEEEEEccCCc
Q 005043 314 IAGGGSRKKRHAETLIFDILKGEW-SVAITSPSSSVTSNKGFTLVLVQHKEKDFLVAFGGIKKEPSNQVEVLSIEKNE 390 (717)
Q Consensus 314 V~GG~~~~~~~~dv~~yD~~t~~W-~~l~~~p~~~~~~r~g~s~v~v~~~~~~~I~v~GG~~~~~~n~v~vyd~~~~e 390 (717)
|..... ..+.+||+.+.+. ..+. .+. .....+.+ ..++..||+..... +.+++|++...-
T Consensus 241 v~~~~~-----~~i~~~d~~~g~~~~~~~-~~~------~~~~~i~~-~~dg~~l~v~~~~~----~~l~~~~~~~~g 301 (314)
T 1pjx_A 241 VANWGS-----SHIEVFGPDGGQPKMRIR-CPF------EKPSNLHF-KPQTKTIFVTEHEN----NAVWKFEWQRNG 301 (314)
T ss_dssp EEEETT-----TEEEEECTTCBSCSEEEE-CSS------SCEEEEEE-CTTSSEEEEEETTT----TEEEEEECSSCB
T ss_pred EEEcCC-----CEEEEEcCCCCcEeEEEe-CCC------CCceeEEE-CCCCCEEEEEeCCC----CeEEEEeCCCCC
Confidence 875322 3589999985432 2222 111 12233333 33344577655432 478999987654
No 71
>3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans}
Probab=96.66 E-value=0.15 Score=52.27 Aligned_cols=234 Identities=10% Similarity=-0.007 Sum_probs=116.7
Q ss_pred CCEEEEEcccCCCCCcccEEEEEcCCCceEEccccccCCCCCCCCCCCcccceEEEEE-C-CEEEEEeccCCCCCCceEE
Q 005043 98 GNKMIVVGGESGNGLLDDVQVLNFDRFSWTAASSKLYLSPSSLPLKIPACRGHSLISW-G-KKVLLVGGKTDSGSDRVSV 175 (717)
Q Consensus 98 ~~~lyV~GG~~~~~~~~~v~~yd~~t~~W~~l~~~~~~~~~~~~~~~p~r~~hs~v~~-~-~~Iyv~GG~~~~~~~~~~v 175 (717)
.+.+|+.++.+ +.+.+||+.+++....... + .. ...++.. + +.+|+.+... ..+
T Consensus 9 ~~~~~v~~~~~-----~~v~~~d~~~~~~~~~~~~----------~--~~-~~~~~~s~dg~~l~~~~~~~------~~i 64 (331)
T 3u4y_A 9 SNFGIVVEQHL-----RRISFFSTDTLEILNQITL----------G--YD-FVDTAITSDCSNVVVTSDFC------QTL 64 (331)
T ss_dssp CCEEEEEEGGG-----TEEEEEETTTCCEEEEEEC----------C--CC-EEEEEECSSSCEEEEEESTT------CEE
T ss_pred CCEEEEEecCC-----CeEEEEeCcccceeeeEEc----------c--CC-cceEEEcCCCCEEEEEeCCC------CeE
Confidence 46788887644 3689999999877654431 1 11 1122222 3 4577766532 279
Q ss_pred EEEECCCCcE-EEeeecCCCCCCceeeEEEEE--CCEEEEEccccCCCCCcCcEEEEEcCCCceEeccCCCCCCCCCccc
Q 005043 176 WTFDTETECW-SVVEAKGDIPVARSGHTVVRA--SSVLILFGGEDGKRRKLNDLHMFDLKSLTWLPLHCTGTGPSPRSNH 252 (717)
Q Consensus 176 ~~yD~~t~~W-~~l~~~g~~P~~R~~hs~~~~--~~~Lyv~GG~~~~~~~~~~v~~yD~~t~~W~~l~~~g~~P~~R~~~ 252 (717)
++||+.+++. ......+ ..+ .++++.. +..|| .+...+ -...+++||+.+.+....-.. ....+
T Consensus 65 ~~~d~~~~~~~~~~~~~~--~~~--~~~~~~s~dg~~l~-~~~~~~---~~~~i~v~d~~~~~~~~~~~~-----~~~~~ 131 (331)
T 3u4y_A 65 VQIETQLEPPKVVAIQEG--QSS--MADVDITPDDQFAV-TVTGLN---HPFNMQSYSFLKNKFISTIPI-----PYDAV 131 (331)
T ss_dssp EEEECSSSSCEEEEEEEC--SSC--CCCEEECTTSSEEE-ECCCSS---SSCEEEEEETTTTEEEEEEEC-----CTTEE
T ss_pred EEEECCCCceeEEecccC--CCC--ccceEECCCCCEEE-EecCCC---CcccEEEEECCCCCeEEEEEC-----CCCcc
Confidence 9999998874 2222211 111 1213332 34566 332111 113799999988876543211 11223
Q ss_pred EEEEEC-CcEEEEEcCCCCCCCCCe-EEEEECCCCc-EEEeecCCCCCCCCcceEEEEE-CC-EEEEEecCCCCCccCeE
Q 005043 253 VAALYD-DKNLLIFGGSSKSKTLND-LYSLDFETMI-WTRIKIRGFHPSPRAGCCGVLC-GT-KWYIAGGGSRKKRHAET 327 (717)
Q Consensus 253 aa~~~~-~~~lyV~GG~~~~~~~nd-v~~yd~~t~~-W~~v~~~g~~P~~R~~~sav~~-~~-~IyV~GG~~~~~~~~dv 327 (717)
.++... ++.+|+.+... +. +.+|++.... ....... ..+.......++.. ++ .+|+.+..+ ..+
T Consensus 132 ~~~~spdg~~l~~~~~~~-----~~~i~~~~~~~~g~~~~~~~~-~~~~~~~~~~~~~spdg~~l~v~~~~~-----~~v 200 (331)
T 3u4y_A 132 GIAISPNGNGLILIDRSS-----ANTVRRFKIDADGVLFDTGQE-FISGGTRPFNITFTPDGNFAFVANLIG-----NSI 200 (331)
T ss_dssp EEEECTTSSCEEEEEETT-----TTEEEEEEECTTCCEEEEEEE-EECSSSSEEEEEECTTSSEEEEEETTT-----TEE
T ss_pred ceEECCCCCEEEEEecCC-----CceEEEEEECCCCcEeecCCc-cccCCCCccceEECCCCCEEEEEeCCC-----CeE
Confidence 444444 34577765432 24 6777765321 1111000 00111112233332 44 577776433 459
Q ss_pred EEEECCCCcE---EEeecCCCCCCCCCcceEEEEEEeCCCcEEEEEcCCCCCCCCeEEEEEccCCcc
Q 005043 328 LIFDILKGEW---SVAITSPSSSVTSNKGFTLVLVQHKEKDFLVAFGGIKKEPSNQVEVLSIEKNES 391 (717)
Q Consensus 328 ~~yD~~t~~W---~~l~~~p~~~~~~r~g~s~v~v~~~~~~~I~v~GG~~~~~~n~v~vyd~~~~eW 391 (717)
.+||+.+.+. .... +.. . ....+.+. +++..||+..+. .+.+.+||+.+.+.
T Consensus 201 ~v~d~~~~~~~~~~~~~--~~~----~-~~~~~~~s-pdg~~l~v~~~~----~~~i~~~d~~~~~~ 255 (331)
T 3u4y_A 201 GILETQNPENITLLNAV--GTN----N-LPGTIVVS-RDGSTVYVLTES----TVDVFNFNQLSGTL 255 (331)
T ss_dssp EEEECSSTTSCEEEEEE--ECS----S-CCCCEEEC-TTSSEEEEECSS----EEEEEEEETTTTEE
T ss_pred EEEECCCCcccceeeec--cCC----C-CCceEEEC-CCCCEEEEEEcC----CCEEEEEECCCCce
Confidence 9999988765 2211 111 1 11122232 344557665542 23588999887663
No 72
>4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens}
Probab=96.65 E-value=0.14 Score=54.01 Aligned_cols=188 Identities=11% Similarity=0.042 Sum_probs=93.6
Q ss_pred CCEEEEEeccCCCCCCceEEEEEECCCCcEEEeeecCCCCCCceeeEEEEE--CCEEEEEccccCCCCCcCcEEEEEcCC
Q 005043 156 GKKVLLVGGKTDSGSDRVSVWTFDTETECWSVVEAKGDIPVARSGHTVVRA--SSVLILFGGEDGKRRKLNDLHMFDLKS 233 (717)
Q Consensus 156 ~~~Iyv~GG~~~~~~~~~~v~~yD~~t~~W~~l~~~g~~P~~R~~hs~~~~--~~~Lyv~GG~~~~~~~~~~v~~yD~~t 233 (717)
+++.++.|+.+. .+.+||+.+++-...-. .... .-.+++.. +..+++.|+.++ .+.+||+.+
T Consensus 138 dg~~l~sgs~d~------~i~iwd~~~~~~~~~~~---~h~~-~V~~~~~~~~~~~~l~s~s~D~------~v~iwd~~~ 201 (344)
T 4gqb_B 138 SGTQAVSGSKDI------CIKVWDLAQQVVLSSYR---AHAA-QVTCVAASPHKDSVFLSCSEDN------RILLWDTRC 201 (344)
T ss_dssp TSSEEEEEETTS------CEEEEETTTTEEEEEEC---CCSS-CEEEEEECSSCTTEEEEEETTS------CEEEEETTS
T ss_pred CCCEEEEEeCCC------eEEEEECCCCcEEEEEc---CcCC-ceEEEEecCCCCCceeeecccc------ccccccccc
Confidence 567777777642 58889998876433211 1111 11222222 335777777654 378899887
Q ss_pred CceEeccCCCCCCCCCccc-EEEEE-CCcEEEEEcCCCCCCCCCeEEEEECCCCcEE-EeecCCCCCCCCcceEEEEE-C
Q 005043 234 LTWLPLHCTGTGPSPRSNH-VAALY-DDKNLLIFGGSSKSKTLNDLYSLDFETMIWT-RIKIRGFHPSPRAGCCGVLC-G 309 (717)
Q Consensus 234 ~~W~~l~~~g~~P~~R~~~-aa~~~-~~~~lyV~GG~~~~~~~ndv~~yd~~t~~W~-~v~~~g~~P~~R~~~sav~~-~ 309 (717)
.+-...- ......... +++.. .+..+++.|+.++ .|.+||+.+..-. .+.. ....-.+++.. +
T Consensus 202 ~~~~~~~---~~~~~~~~~~~~~~~p~~~~~l~sg~~dg-----~v~~wd~~~~~~~~~~~~-----h~~~v~~v~fsp~ 268 (344)
T 4gqb_B 202 PKPASQI---GCSAPGYLPTSLAWHPQQSEVFVFGDENG-----TVSLVDTKSTSCVLSSAV-----HSQCVTGLVFSPH 268 (344)
T ss_dssp SSCEEEC---C----CCCEEEEEECSSCTTEEEEEETTS-----EEEEEESCC--CCEEEEC-----CSSCEEEEEECSS
T ss_pred cceeeee---ecceeeccceeeeecCCCCcceEEeccCC-----cEEEEECCCCcEEEEEcC-----CCCCEEEEEEccC
Confidence 6543221 111111111 22232 2334777887653 5889998765321 1111 11112222222 3
Q ss_pred -CEEEEEecCCCCCccCeEEEEECCCCcEEEeecCCCCCCCCCcceEEEEEEeCCCcEEEEEcCCCCCCCCeEEEEEccC
Q 005043 310 -TKWYIAGGGSRKKRHAETLIFDILKGEWSVAITSPSSSVTSNKGFTLVLVQHKEKDFLVAFGGIKKEPSNQVEVLSIEK 388 (717)
Q Consensus 310 -~~IyV~GG~~~~~~~~dv~~yD~~t~~W~~l~~~p~~~~~~r~g~s~v~v~~~~~~~I~v~GG~~~~~~n~v~vyd~~~ 388 (717)
.++++.|+.++. |.+||..+.+-..+. .. ......+.+. +.+..+++.||.++ .|.++++.+
T Consensus 269 g~~~lasgs~D~~-----i~vwd~~~~~~~~~~---~H----~~~V~~v~~s-p~~~~llas~s~D~----~v~~w~v~~ 331 (344)
T 4gqb_B 269 SVPFLASLSEDCS-----LAVLDSSLSELFRSQ---AH----RDFVRDATWS-PLNHSLLTTVGWDH----QVVHHVVPT 331 (344)
T ss_dssp SSCCEEEEETTSC-----EEEECTTCCEEEEEC---CC----SSCEEEEEEC-SSSTTEEEEEETTS----CEEEEECCC
T ss_pred CCeEEEEEeCCCe-----EEEEECCCCcEEEEc---CC----CCCEEEEEEe-CCCCeEEEEEcCCC----eEEEEECCC
Confidence 356777776544 889998887533321 11 1112333332 33455777788754 366676654
Q ss_pred C
Q 005043 389 N 389 (717)
Q Consensus 389 ~ 389 (717)
.
T Consensus 332 ~ 332 (344)
T 4gqb_B 332 E 332 (344)
T ss_dssp -
T ss_pred C
Confidence 3
No 73
>3azo_A Aminopeptidase; POP family, hydrolase; 2.00A {Streptomyces morookaensis} PDB: 3azp_A 3azq_A
Probab=96.62 E-value=0.62 Score=53.05 Aligned_cols=199 Identities=13% Similarity=-0.026 Sum_probs=107.2
Q ss_pred cccEEEEEcCC------CceEEcc-ccccCCCCCCCCCCCcccceEEEEECCEEEEEeccCCCCC--CceEEEEEECC-C
Q 005043 113 LDDVQVLNFDR------FSWTAAS-SKLYLSPSSLPLKIPACRGHSLISWGKKVLLVGGKTDSGS--DRVSVWTFDTE-T 182 (717)
Q Consensus 113 ~~~v~~yd~~t------~~W~~l~-~~~~~~~~~~~~~~p~r~~hs~v~~~~~Iyv~GG~~~~~~--~~~~v~~yD~~-t 182 (717)
..+++++|+.+ .....+. .. ..........-+++.+++........ ...++|++|+. +
T Consensus 160 ~~~i~~~~~~~~~~~~~~~~~~l~~~~------------~~~~~~~~~SpDG~~la~~~~~~~~~~~~~~~i~~~d~~~~ 227 (662)
T 3azo_A 160 RRFLAAVPLDGSAAADRSAVRELSDDA------------HRFVTGPRLSPDGRQAVWLAWDHPRMPWEGTELKTARVTED 227 (662)
T ss_dssp EEEEEEEETTSTTTTCGGGSEESSCSC------------SSEECCCEECTTSSEEEEEEECTTCCTTTCEEEEEEEECTT
T ss_pred eeEEEEEECCCCccccCCceeEEEecC------------CCcccCceECCCCCEEEEEECCCCCCCCCCcEEEEEEECCC
Confidence 35899999988 6666554 31 11111112222454444444332211 23589999998 5
Q ss_pred C---cEEEeeecCCCCCCceeeEEEEE-CCEEEEEccccCCCCCcCcEEEEEcCCCceEeccCCC-CCCCCCc---ccEE
Q 005043 183 E---CWSVVEAKGDIPVARSGHTVVRA-SSVLILFGGEDGKRRKLNDLHMFDLKSLTWLPLHCTG-TGPSPRS---NHVA 254 (717)
Q Consensus 183 ~---~W~~l~~~g~~P~~R~~hs~~~~-~~~Lyv~GG~~~~~~~~~~v~~yD~~t~~W~~l~~~g-~~P~~R~---~~aa 254 (717)
+ ....+... . .......+.. ++++|+.+..++ ...+|++|+.+.+|..+.... ..-.+.. ....
T Consensus 228 g~~~~~~~l~~~---~-~~~~~~~~~spdg~l~~~~~~~~----~~~l~~~~~~~~~~~~l~~~~~~~~~p~w~~~~~~~ 299 (662)
T 3azo_A 228 GRFADTRTLLGG---P-EEAIAQAEWAPDGSLIVATDRTG----WWNLHRVDPATGAATQLCRREEEFAGPLWTPGMRWF 299 (662)
T ss_dssp SCEEEEEEEEEE---T-TBCEEEEEECTTSCEEEEECTTS----SCEEEEECTTTCCEEESSCCSSBSSCCCCSTTCCSE
T ss_pred CcccccEEeCCC---C-CceEcceEECCCCeEEEEECCCC----CeEEEEEECCCCceeecccccccccCccccccCceE
Confidence 6 44444321 0 1122233333 567777665432 247999999888998875211 0000100 1123
Q ss_pred EEECCcEEEEEcCCCCCCCCCeEEEEECCCCcEEEeecCCCCCCCCcceEE-EEECCEEEEEecCCCCCccCeEEEEECC
Q 005043 255 ALYDDKNLLIFGGSSKSKTLNDLYSLDFETMIWTRIKIRGFHPSPRAGCCG-VLCGTKWYIAGGGSRKKRHAETLIFDIL 333 (717)
Q Consensus 255 ~~~~~~~lyV~GG~~~~~~~ndv~~yd~~t~~W~~v~~~g~~P~~R~~~sa-v~~~~~IyV~GG~~~~~~~~dv~~yD~~ 333 (717)
+...++.+++.+.. ....+|.+|+.++..+.+... . ...... ...++.+++..+... ....+|.+|+.
T Consensus 300 ~~~~~~~~~~~~~~----~~~~l~~~d~~~~~~~~l~~~----~-~~~~~~~s~~~~~~~~~~~~~~--~~~~i~~~d~~ 368 (662)
T 3azo_A 300 APLANGLIAVVHGK----GAAVLGILDPESGELVDAAGP----W-TEWAATLTVSGTRAVGVAASPR--TAYEVVELDTV 368 (662)
T ss_dssp EECTTSCEEEEEBS----SSCEEEEEETTTTEEEECCSS----C-CEEEEEEEEETTEEEEEEEETT--EEEEEEEEETT
T ss_pred eEeCCCEEEEEEEc----CccEEEEEECCCCcEEEecCC----C-CeEEEEEecCCCEEEEEEcCCC--CCCEEEEEECC
Confidence 44434436665543 235799999988887776431 1 112222 344677766655322 23578999999
Q ss_pred CCcEEEeec
Q 005043 334 KGEWSVAIT 342 (717)
Q Consensus 334 t~~W~~l~~ 342 (717)
+.+.+.+..
T Consensus 369 ~g~~~~l~~ 377 (662)
T 3azo_A 369 TGRARTIGA 377 (662)
T ss_dssp TCCEEEEES
T ss_pred CCceEEeec
Confidence 998888753
No 74
>3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum}
Probab=96.60 E-value=0.16 Score=52.71 Aligned_cols=236 Identities=12% Similarity=0.089 Sum_probs=110.3
Q ss_pred cEEEEEcCCCceEEccccccCCCCCCCCCCCcccceEEEEECCEEEEEeccCCCCCCceEEEEEECCCCcEEEeeecCCC
Q 005043 115 DVQVLNFDRFSWTAASSKLYLSPSSLPLKIPACRGHSLISWGKKVLLVGGKTDSGSDRVSVWTFDTETECWSVVEAKGDI 194 (717)
Q Consensus 115 ~v~~yd~~t~~W~~l~~~~~~~~~~~~~~~p~r~~hs~v~~~~~Iyv~GG~~~~~~~~~~v~~yD~~t~~W~~l~~~g~~ 194 (717)
.+|.+|..+.++..+..... ...| ...+..-+++||+.+... ....+++||+.++.++.+....
T Consensus 19 ~v~~~d~~tg~~~~~~~~~~-------~~~p---~~~a~spdg~l~~~~~~~----~~~~v~~~~~~~g~~~~~~~~~-- 82 (347)
T 3hfq_A 19 YQGTLDTTAKTLTNDGLLAA-------TQNP---TYLALSAKDCLYSVDKED----DEGGIAAWQIDGQTAHKLNTVV-- 82 (347)
T ss_dssp EEEEEETTTTEEEEEEEEEE-------CSCC---CCEEECTTCEEEEEEEET----TEEEEEEEEEETTEEEEEEEEE--
T ss_pred EEEEEcCCCCeEEEeeeeec-------cCCc---ceEEEccCCeEEEEEecC----CCceEEEEEecCCcEEEeeeee--
Confidence 46777888888776543110 0011 112222366777775431 1246999999888877655310
Q ss_pred CCCceeeEEEEE-CC-EEEEEccccCCCCCcCcEEEEEcC-CCceEecc---CCCCCCCCCc----ccEEEEECCcEEEE
Q 005043 195 PVARSGHTVVRA-SS-VLILFGGEDGKRRKLNDLHMFDLK-SLTWLPLH---CTGTGPSPRS----NHVAALYDDKNLLI 264 (717)
Q Consensus 195 P~~R~~hs~~~~-~~-~Lyv~GG~~~~~~~~~~v~~yD~~-t~~W~~l~---~~g~~P~~R~----~~aa~~~~~~~lyV 264 (717)
.....-..++.. ++ .||+.+.. -+.+.+||+. +.....+. ..+..|.+|. -+.++...+..+|+
T Consensus 83 ~~~~~p~~~a~spdg~~l~~~~~~------~~~v~v~~~~~~g~~~~~~~~~~~~~~p~~~~~~~~~~~~~~spdg~l~v 156 (347)
T 3hfq_A 83 APGTPPAYVAVDEARQLVYSANYH------KGTAEVMKIAADGALTLTDTVQHSGHGPRPEQDGSHIHYTDLTPDNRLAV 156 (347)
T ss_dssp EESCCCSEEEEETTTTEEEEEETT------TTEEEEEEECTTSCEEEEEEEECCCCCSSTTCSSCCEEEEEECTTSCEEE
T ss_pred cCCCCCEEEEECCCCCEEEEEeCC------CCEEEEEEeCCCCCeeecceeecCCCCCCccccCCCceEEEECCCCcEEE
Confidence 011111233333 34 56665421 2457778874 33333322 1222222221 22334443333777
Q ss_pred EcCCCCCCCCCeEEEEECC-CCcEEEeecCCCCCCCCcceEEEEE-CC-EEEEEecCCCCCccCeEEEEECC--CCcEEE
Q 005043 265 FGGSSKSKTLNDLYSLDFE-TMIWTRIKIRGFHPSPRAGCCGVLC-GT-KWYIAGGGSRKKRHAETLIFDIL--KGEWSV 339 (717)
Q Consensus 265 ~GG~~~~~~~ndv~~yd~~-t~~W~~v~~~g~~P~~R~~~sav~~-~~-~IyV~GG~~~~~~~~dv~~yD~~--t~~W~~ 339 (717)
.+... +.+++|++. ++....+..... +....-..++.. ++ .+|+.+... ..+.+|++. +.++..
T Consensus 157 ~~~~~-----~~v~~~~~~~~g~~~~~~~~~~-~~g~~p~~~~~spdg~~l~v~~~~~-----~~v~v~~~~~~~g~~~~ 225 (347)
T 3hfq_A 157 IDLGS-----DKVYVYNVSDAGQLSEQSVLTM-EAGFGPRHLVFSPDGQYAFLAGELS-----SQIASLKYDTQTGAFTQ 225 (347)
T ss_dssp EETTT-----TEEEEEEECTTSCEEEEEEEEC-CTTCCEEEEEECTTSSEEEEEETTT-----TEEEEEEEETTTTEEEE
T ss_pred EeCCC-----CEEEEEEECCCCcEEEeeeEEc-CCCCCCceEEECCCCCEEEEEeCCC-----CEEEEEEecCCCCceEE
Confidence 65432 468999987 566655432111 111111122222 44 477766433 235555544 567655
Q ss_pred eecCCCCCC--CCCcceEEEEEEeCCCcEEEEEcCCCCCCCCeEEEEEccC
Q 005043 340 AITSPSSSV--TSNKGFTLVLVQHKEKDFLVAFGGIKKEPSNQVEVLSIEK 388 (717)
Q Consensus 340 l~~~p~~~~--~~r~g~s~v~v~~~~~~~I~v~GG~~~~~~n~v~vyd~~~ 388 (717)
+........ ....+...+.+. +++.+||+.+.. .+.+.+|++..
T Consensus 226 ~~~~~~~~~~~~~~~~~~~i~~s-pdG~~l~v~~~~----~~~v~v~~~~~ 271 (347)
T 3hfq_A 226 LGIVKTIPADYTAHNGAAAIRLS-HDGHFLYVSNRG----YNTLAVFAVTA 271 (347)
T ss_dssp EEEEESSCTTCCSCCEEEEEEEC-TTSCEEEEEEET----TTEEEEEEECG
T ss_pred eeeeeecCCCCCCCCcceeEEEC-CCCCEEEEEeCC----CCEEEEEEECC
Confidence 432111110 111223333343 344567665542 23788888763
No 75
>1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A
Probab=96.59 E-value=0.2 Score=49.60 Aligned_cols=229 Identities=12% Similarity=-0.011 Sum_probs=115.9
Q ss_pred CCEEEE-EcccCCCCCcccEEEEEcCCCceEEccccccCCCCCCCCCCCcccceEEEEE-CCEEEEEeccCCCCCCceEE
Q 005043 98 GNKMIV-VGGESGNGLLDDVQVLNFDRFSWTAASSKLYLSPSSLPLKIPACRGHSLISW-GKKVLLVGGKTDSGSDRVSV 175 (717)
Q Consensus 98 ~~~lyV-~GG~~~~~~~~~v~~yd~~t~~W~~l~~~~~~~~~~~~~~~p~r~~hs~v~~-~~~Iyv~GG~~~~~~~~~~v 175 (717)
++++|+ ..... +.+.+||+.+......... . ...-++++.. ++.+|+... . ..+
T Consensus 34 ~g~l~v~~~~~~-----~~i~~~~~~~~~~~~~~~~----------~--~~~p~~i~~~~~g~l~v~~~-~------~~i 89 (270)
T 1rwi_B 34 AGNVYVTSEGMY-----GRVVKLATGSTGTTVLPFN----------G--LYQPQGLAVDGAGTVYVTDF-N------NRV 89 (270)
T ss_dssp TCCEEEEECSSS-----CEEEEECC-----EECCCC----------S--CCSCCCEEECTTCCEEEEET-T------TEE
T ss_pred CCCEEEEccCCC-----CcEEEecCCCcccceEeeC----------C--cCCcceeEECCCCCEEEEcC-C------CEE
Confidence 467888 43322 3688898877655443321 0 0111334443 567888754 1 269
Q ss_pred EEEECCCCcEEEeeecCCCCCCceeeEEEEE-CCEEEEEccccCCCCCcCcEEEEEcCCCceEeccCCCCCCCCCcccEE
Q 005043 176 WTFDTETECWSVVEAKGDIPVARSGHTVVRA-SSVLILFGGEDGKRRKLNDLHMFDLKSLTWLPLHCTGTGPSPRSNHVA 254 (717)
Q Consensus 176 ~~yD~~t~~W~~l~~~g~~P~~R~~hs~~~~-~~~Lyv~GG~~~~~~~~~~v~~yD~~t~~W~~l~~~g~~P~~R~~~aa 254 (717)
++||+.+.....+.. ......+.++.. ++.||+.... .+.+++||..+......... ....+ ..+
T Consensus 90 ~~~d~~~~~~~~~~~----~~~~~p~~i~~~~~g~l~v~~~~------~~~i~~~~~~~~~~~~~~~~-~~~~p---~~i 155 (270)
T 1rwi_B 90 VTLAAGSNNQTVLPF----DGLNYPEGLAVDTQGAVYVADRG------NNRVVKLAAGSKTQTVLPFT-GLNDP---DGV 155 (270)
T ss_dssp EEECTTCSCCEECCC----CSCSSEEEEEECTTCCEEEEEGG------GTEEEEECTTCCSCEECCCC-SCCSC---CCE
T ss_pred EEEeCCCceEeeeec----CCcCCCcceEECCCCCEEEEECC------CCEEEEEECCCceeEeeccc-cCCCc---eeE
Confidence 999998876544431 111223344443 5688887532 24588888776654433211 11111 234
Q ss_pred EEECCcEEEEEcCCCCCCCCCeEEEEECCCCcEEEeecCCCCCCCCcceEEEEE-CCEEEEEecCCCCCccCeEEEEECC
Q 005043 255 ALYDDKNLLIFGGSSKSKTLNDLYSLDFETMIWTRIKIRGFHPSPRAGCCGVLC-GTKWYIAGGGSRKKRHAETLIFDIL 333 (717)
Q Consensus 255 ~~~~~~~lyV~GG~~~~~~~ndv~~yd~~t~~W~~v~~~g~~P~~R~~~sav~~-~~~IyV~GG~~~~~~~~dv~~yD~~ 333 (717)
+...+..+|+....+ +.|.+||+.+..-...... . ...-.+++.. ++.+|+..... ..+++||+.
T Consensus 156 ~~~~~g~l~v~~~~~-----~~i~~~~~~~~~~~~~~~~---~-~~~p~~i~~d~~g~l~v~~~~~-----~~v~~~~~~ 221 (270)
T 1rwi_B 156 AVDNSGNVYVTDTDN-----NRVVKLEAESNNQVVLPFT---D-ITAPWGIAVDEAGTVYVTEHNT-----NQVVKLLAG 221 (270)
T ss_dssp EECTTCCEEEEEGGG-----TEEEEECTTTCCEEECCCS---S-CCSEEEEEECTTCCEEEEETTT-----SCEEEECTT
T ss_pred EEeCCCCEEEEECCC-----CEEEEEecCCCceEeeccc---C-CCCceEEEECCCCCEEEEECCC-----CcEEEEcCC
Confidence 444333488765432 4699999987664443221 1 1122233333 46888877533 348999987
Q ss_pred CCcEEEeecCCCCCCCCCcceEEEEEEeCCCcEEEEEcCCCCCCCCeEEEEEccCCc
Q 005043 334 KGEWSVAITSPSSSVTSNKGFTLVLVQHKEKDFLVAFGGIKKEPSNQVEVLSIEKNE 390 (717)
Q Consensus 334 t~~W~~l~~~p~~~~~~r~g~s~v~v~~~~~~~I~v~GG~~~~~~n~v~vyd~~~~e 390 (717)
+..-.... .. .......+.+.. ++.||+.... .+.|.+|++...+
T Consensus 222 ~~~~~~~~---~~---~~~~p~~i~~~~--~g~l~v~~~~----~~~v~~~~~~~~~ 266 (270)
T 1rwi_B 222 STTSTVLP---FT---GLNTPLAVAVDS--DRTVYVADRG----NDRVVKLTSLEHH 266 (270)
T ss_dssp CSCCEECC---CC---SCSCEEEEEECT--TCCEEEEEGG----GTEEEEECCCGGG
T ss_pred CCcceeec---cC---CCCCceeEEECC--CCCEEEEECC----CCEEEEEcCCCcc
Confidence 75433321 11 111223333322 3457766543 2378888876654
No 76
>3v9f_A Two-component system sensor histidine kinase/RESP regulator, hybrid (ONE-component...; beta-propeller, beta-sandwich; 3.30A {Bacteroides thetaiotaomicron}
Probab=96.58 E-value=0.083 Score=62.20 Aligned_cols=225 Identities=7% Similarity=-0.060 Sum_probs=122.3
Q ss_pred cEEEEEcCCCceEEccccccCCCCCCCCCCCcccceEEEEE-CCEEEEEeccCCCCCCceEEEEEECCCCcEEEeeecC-
Q 005043 115 DVQVLNFDRFSWTAASSKLYLSPSSLPLKIPACRGHSLISW-GKKVLLVGGKTDSGSDRVSVWTFDTETECWSVVEAKG- 192 (717)
Q Consensus 115 ~v~~yd~~t~~W~~l~~~~~~~~~~~~~~~p~r~~hs~v~~-~~~Iyv~GG~~~~~~~~~~v~~yD~~t~~W~~l~~~g- 192 (717)
.+++||+.++.+...... ..+...-.+++.. ++.|++-.. .-+++||+.+++|.......
T Consensus 428 Gl~~~~~~~~~~~~~~~~----------~~~~~~v~~i~~d~~g~lwigt~--------~Gl~~~~~~~~~~~~~~~~~~ 489 (781)
T 3v9f_A 428 NISYYNTRLKKFQIIELE----------KNELLDVRVFYEDKNKKIWIGTH--------AGVFVIDLASKKVIHHYDTSN 489 (781)
T ss_dssp EEEEECSSSCEEEECCST----------TTCCCCEEEEEECTTSEEEEEET--------TEEEEEESSSSSCCEEECTTT
T ss_pred CEEEEcCCCCcEEEeccC----------CCCCCeEEEEEECCCCCEEEEEC--------CceEEEeCCCCeEEecccCcc
Confidence 466777777777665431 1111222344444 466766432 14899999999887765311
Q ss_pred -CCCCCceeeEEEEE-CCEEEEEccccCCCCCcCcEEEEEcCCCceEeccCCCCCCCCCcccEEEEECCcEEEEEcCCCC
Q 005043 193 -DIPVARSGHTVVRA-SSVLILFGGEDGKRRKLNDLHMFDLKSLTWLPLHCTGTGPSPRSNHVAALYDDKNLLIFGGSSK 270 (717)
Q Consensus 193 -~~P~~R~~hs~~~~-~~~Lyv~GG~~~~~~~~~~v~~yD~~t~~W~~l~~~g~~P~~R~~~aa~~~~~~~lyV~GG~~~ 270 (717)
..+.. .-.+++.. ++.||+-. . -..+++||+.+.+|........+|.... .+.+.-.+..|++...
T Consensus 490 ~~~~~~-~i~~i~~d~~g~lWigt-~------~~Gl~~~~~~~~~~~~~~~~~~l~~~~i-~~i~~d~~g~lWi~T~--- 557 (781)
T 3v9f_A 490 SQLLEN-FVRSIAQDSEGRFWIGT-F------GGGVGIYTPDMQLVRKFNQYEGFCSNTI-NQIYRSSKGQMWLATG--- 557 (781)
T ss_dssp SSCSCS-CEEEEEECTTCCEEEEE-S------SSCEEEECTTCCEEEEECTTTTCSCSCE-EEEEECTTSCEEEEET---
T ss_pred cccccc-eeEEEEEcCCCCEEEEE-c------CCCEEEEeCCCCeEEEccCCCCCCCCee-EEEEECCCCCEEEEEC---
Confidence 11111 12233332 46787742 1 1348999999999887753223332221 1222222333666432
Q ss_pred CCCCCeE-EEEECCCCcEEEeecCCCCCCCCcceEEEEE-CCEEEEEecCCCCCccCeEEEEECCCCcEEEeecCCCCCC
Q 005043 271 SKTLNDL-YSLDFETMIWTRIKIRGFHPSPRAGCCGVLC-GTKWYIAGGGSRKKRHAETLIFDILKGEWSVAITSPSSSV 348 (717)
Q Consensus 271 ~~~~ndv-~~yd~~t~~W~~v~~~g~~P~~R~~~sav~~-~~~IyV~GG~~~~~~~~dv~~yD~~t~~W~~l~~~p~~~~ 348 (717)
+-+ ++||+.+++++.......+|.... .+++.. ++.|++.+. ..+.+||+.+.++........ .+
T Consensus 558 ----~Glv~~~d~~~~~~~~~~~~~gl~~~~i-~~i~~d~~g~lW~~t~-------~Gl~~~~~~~~~~~~~~~~dG-l~ 624 (781)
T 3v9f_A 558 ----EGLVCFPSARNFDYQVFQRKEGLPNTHI-RAISEDKNGNIWASTN-------TGISCYITSKKCFYTYDHSNN-IP 624 (781)
T ss_dssp ----TEEEEESCTTTCCCEEECGGGTCSCCCC-CEEEECSSSCEEEECS-------SCEEEEETTTTEEEEECGGGT-CC
T ss_pred ----CCceEEECCCCCcEEEccccCCCCCceE-EEEEECCCCCEEEEcC-------CceEEEECCCCceEEecccCC-cc
Confidence 236 999999998887765322343332 344443 577887653 248999999999888753221 12
Q ss_pred CCCcceEEEEEEeCCCcEEEEEcCCCCCCCCeEEEEEccCCc
Q 005043 349 TSNKGFTLVLVQHKEKDFLVAFGGIKKEPSNQVEVLSIEKNE 390 (717)
Q Consensus 349 ~~r~g~s~v~v~~~~~~~I~v~GG~~~~~~n~v~vyd~~~~e 390 (717)
.......+++.. .++. +.|||.+ -+..|+|....
T Consensus 625 ~~~f~~~~~~~~--~~G~-l~~g~~~-----Gl~~f~p~~~~ 658 (781)
T 3v9f_A 625 QGSFISGCVTKD--HNGL-IYFGSIN-----GLCFFNPDIAI 658 (781)
T ss_dssp SSCEEEEEEEEC--TTSC-EEEEETT-----EEEEECSCCGG
T ss_pred ccccccCceEEC--CCCE-EEEECCC-----ceEEEChhhcc
Confidence 222222233332 2344 4567754 57888886543
No 77
>1kb0_A Quinohemoprotein alcohol dehydrogenase; beta-propeller fold, cytochrome C, oxidoreductase; HET: TRO HEC PQQ; 1.44A {Comamonas testosteroni} SCOP: a.3.1.6 b.70.1.1
Probab=96.57 E-value=0.26 Score=57.33 Aligned_cols=131 Identities=13% Similarity=0.075 Sum_probs=74.0
Q ss_pred eEEEEECCEEEEEcccCCCCCcccEEEEEcCCC--ceEEccccccCCCCCCCCCCCcccceEEEEECCEEEEEeccCCCC
Q 005043 92 HAAAVIGNKMIVVGGESGNGLLDDVQVLNFDRF--SWTAASSKLYLSPSSLPLKIPACRGHSLISWGKKVLLVGGKTDSG 169 (717)
Q Consensus 92 haav~~~~~lyV~GG~~~~~~~~~v~~yd~~t~--~W~~l~~~~~~~~~~~~~~~p~r~~hs~v~~~~~Iyv~GG~~~~~ 169 (717)
.+-++.++.||+.... +.++.+|..+. .|+.-........ +.........+.++.+++||+....
T Consensus 71 ~~P~v~~g~vyv~~~~------~~v~AlD~~tG~~~W~~~~~~~~~~~---~~~~~~~~~~~~a~~~~~v~v~~~d---- 137 (677)
T 1kb0_A 71 ATPVVVDGIMYVSASW------SVVHAIDTRTGNRIWTYDPQIDRSTG---FKGCCDVVNRGVALWKGKVYVGAWD---- 137 (677)
T ss_dssp CCCEEETTEEEEECGG------GCEEEEETTTTEEEEEECCCCCGGGG---GGSSSCSCCCCCEEETTEEEEECTT----
T ss_pred eCCEEECCEEEEECCC------CeEEEEECCCCcEEEEEcCCCCcccc---ccccccCCCCCceEECCEEEEEcCC----
Confidence 3345679999998752 36899999886 6987554210000 0000000112445678888886431
Q ss_pred CCceEEEEEECCCCc--EEEeeecCCCCCCceeeEEEEECCEEEEEccccCCCCCcCcEEEEEcCCCc--eEec
Q 005043 170 SDRVSVWTFDTETEC--WSVVEAKGDIPVARSGHTVVRASSVLILFGGEDGKRRKLNDLHMFDLKSLT--WLPL 239 (717)
Q Consensus 170 ~~~~~v~~yD~~t~~--W~~l~~~g~~P~~R~~hs~~~~~~~Lyv~GG~~~~~~~~~~v~~yD~~t~~--W~~l 239 (717)
..++.+|..|++ |+.-.............+.++.++.+|+..+.... ..-..++.||..+++ |+.-
T Consensus 138 ---g~l~alD~~tG~~~W~~~~~~~~~~~~~~~~~p~v~~~~v~v~~~~~~~-~~~g~v~a~D~~tG~~~W~~~ 207 (677)
T 1kb0_A 138 ---GRLIALDAATGKEVWHQNTFEGQKGSLTITGAPRVFKGKVIIGNGGAEY-GVRGYITAYDAETGERKWRWF 207 (677)
T ss_dssp ---SEEEEEETTTCCEEEEEETTTTCCSSCBCCSCCEEETTEEEECCBCTTT-CCBCEEEEEETTTCCEEEEEE
T ss_pred ---CEEEEEECCCCCEEeeecCCcCcCcCcccccCcEEECCEEEEEeccccc-CCCCEEEEEECCCCcEEEEec
Confidence 369999998875 87643100000011222344568888775443221 234679999998875 8764
No 78
>3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae}
Probab=96.57 E-value=0.82 Score=46.74 Aligned_cols=200 Identities=9% Similarity=0.017 Sum_probs=97.7
Q ss_pred CCEEEEEcccCCCCCcccEEEEEcCCCceEEccccccCCCCCCCCCCCcccceEEEEE-CCEEEEEeccCCCCCCceEEE
Q 005043 98 GNKMIVVGGESGNGLLDDVQVLNFDRFSWTAASSKLYLSPSSLPLKIPACRGHSLISW-GKKVLLVGGKTDSGSDRVSVW 176 (717)
Q Consensus 98 ~~~lyV~GG~~~~~~~~~v~~yd~~t~~W~~l~~~~~~~~~~~~~~~p~r~~hs~v~~-~~~Iyv~GG~~~~~~~~~~v~ 176 (717)
++++++.|+.++ .+.+||+.+..-...-. .....-.+++.. ++..++.|+.+ ..+.
T Consensus 43 ~~~~l~~~~~dg-----~i~vwd~~~~~~~~~~~------------~h~~~v~~~~~~~~~~~l~s~~~d------g~i~ 99 (369)
T 3zwl_B 43 EGDLLFSCSKDS-----SASVWYSLNGERLGTLD------------GHTGTIWSIDVDCFTKYCVTGSAD------YSIK 99 (369)
T ss_dssp TSCEEEEEESSS-----CEEEEETTTCCEEEEEC------------CCSSCEEEEEECTTSSEEEEEETT------TEEE
T ss_pred CCCEEEEEeCCC-----EEEEEeCCCchhhhhhh------------hcCCcEEEEEEcCCCCEEEEEeCC------CeEE
Confidence 455666676543 58889987764332211 111111223332 46667777753 2689
Q ss_pred EEECCCCcEEEeeecCCCCCCceeeEEEEE-CCEEEEEccccCCCCCcCcEEEEEcCCCc----eEeccCC--C---CCC
Q 005043 177 TFDTETECWSVVEAKGDIPVARSGHTVVRA-SSVLILFGGEDGKRRKLNDLHMFDLKSLT----WLPLHCT--G---TGP 246 (717)
Q Consensus 177 ~yD~~t~~W~~l~~~g~~P~~R~~hs~~~~-~~~Lyv~GG~~~~~~~~~~v~~yD~~t~~----W~~l~~~--g---~~P 246 (717)
+||+.+......-. .+. .-.+++.. ++..++.++.+.. .....+.+||+.+.. +...... . ...
T Consensus 100 iwd~~~~~~~~~~~---~~~--~v~~~~~~~~~~~l~~~~~~~~-~~~g~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~ 173 (369)
T 3zwl_B 100 LWDVSNGQCVATWK---SPV--PVKRVEFSPCGNYFLAILDNVM-KNPGSINIYEIERDSATHELTKVSEEPIHKIITHE 173 (369)
T ss_dssp EEETTTCCEEEEEE---CSS--CEEEEEECTTSSEEEEEECCBT-TBCCEEEEEEEEECTTTCCEEEECSSCSEEEECCT
T ss_pred EEECCCCcEEEEee---cCC--CeEEEEEccCCCEEEEecCCcc-CCCCEEEEEEecCCccceeecccccceeeeccCCc
Confidence 99998876544332 111 12223332 4555555554311 123567788876442 1111100 0 000
Q ss_pred CCCcccEEEEECCcEEEEEcCCCCCCCCCeEEEEECCC-CcEEEeecCCCCCCCCcceEEEEE-CCEEEEEecCCCCCcc
Q 005043 247 SPRSNHVAALYDDKNLLIFGGSSKSKTLNDLYSLDFET-MIWTRIKIRGFHPSPRAGCCGVLC-GTKWYIAGGGSRKKRH 324 (717)
Q Consensus 247 ~~R~~~aa~~~~~~~lyV~GG~~~~~~~ndv~~yd~~t-~~W~~v~~~g~~P~~R~~~sav~~-~~~IyV~GG~~~~~~~ 324 (717)
......+++...+..+++.|+.+ ..+.+||+.+ ..-...-.. ....-.+++.. ++.+++.|+.++
T Consensus 174 ~~~~~~~~~~~~~~~~l~~~~~d-----g~i~i~d~~~~~~~~~~~~~----~~~~v~~~~~~~~~~~l~~~~~d~---- 240 (369)
T 3zwl_B 174 GLDAATVAGWSTKGKYIIAGHKD-----GKISKYDVSNNYEYVDSIDL----HEKSISDMQFSPDLTYFITSSRDT---- 240 (369)
T ss_dssp TCCCEEEEEECGGGCEEEEEETT-----SEEEEEETTTTTEEEEEEEC----CSSCEEEEEECTTSSEEEEEETTS----
T ss_pred CccceeEEEEcCCCCEEEEEcCC-----CEEEEEECCCCcEeEEEEec----CCCceeEEEECCCCCEEEEecCCc----
Confidence 00012223333333366666654 3599999987 332222111 11112222222 566777776543
Q ss_pred CeEEEEECCCCcEEEe
Q 005043 325 AETLIFDILKGEWSVA 340 (717)
Q Consensus 325 ~dv~~yD~~t~~W~~l 340 (717)
.+.+||+.+......
T Consensus 241 -~i~v~d~~~~~~~~~ 255 (369)
T 3zwl_B 241 -NSFLVDVSTLQVLKK 255 (369)
T ss_dssp -EEEEEETTTCCEEEE
T ss_pred -eEEEEECCCCceeee
Confidence 589999988765543
No 79
>2xbg_A YCF48-like protein; photosynthesis, photosystem II, beta-propeller, assembly FAC; 1.50A {Thermosynechococcus elongatus}
Probab=96.56 E-value=0.66 Score=48.44 Aligned_cols=242 Identities=12% Similarity=0.119 Sum_probs=126.5
Q ss_pred CCCCeEEeeecCCCCCCcceeEEEEE-CCEEEEEcccCCCCCcccEEEEEcCCCceEEccccccCCCCCCCCCCCcccce
Q 005043 72 NSENWMVLSIAGDKPIPRFNHAAAVI-GNKMIVVGGESGNGLLDDVQVLNFDRFSWTAASSKLYLSPSSLPLKIPACRGH 150 (717)
Q Consensus 72 ~s~~W~~l~~~g~~P~~R~~haav~~-~~~lyV~GG~~~~~~~~~v~~yd~~t~~W~~l~~~~~~~~~~~~~~~p~r~~h 150 (717)
....|+.+. .|....-.+.... .+.+|++|- . ..+++-.-...+|+.+... .+.+.....
T Consensus 23 ~g~~W~~~~----~~~~~~~~~v~~~~~~~~~~~G~-~-----g~i~~s~DgG~tW~~~~~~---------~~~~~~~~~ 83 (327)
T 2xbg_A 23 DYNPWEAIQ----LPTTATILDMSFIDRHHGWLVGV-N-----ATLMETRDGGQTWEPRTLV---------LDHSDYRFN 83 (327)
T ss_dssp SSCCEEEEE----CSCSSCEEEEEESSSSCEEEEET-T-----TEEEEESSTTSSCEECCCC---------CSCCCCEEE
T ss_pred CCCCceEee----cCCCCcEEEEEECCCCcEEEEcC-C-----CeEEEeCCCCCCCeECCCC---------CCCCCccEE
Confidence 567899986 2333333333333 466888653 1 1244443334589998642 111222234
Q ss_pred EEEEECCEEEEEeccCCCCCCceEEEEEECCCCcEEEeeecCCCCCCceeeEEEE-ECCEEEEEccccCCCCCcCcEEEE
Q 005043 151 SLISWGKKVLLVGGKTDSGSDRVSVWTFDTETECWSVVEAKGDIPVARSGHTVVR-ASSVLILFGGEDGKRRKLNDLHMF 229 (717)
Q Consensus 151 s~v~~~~~Iyv~GG~~~~~~~~~~v~~yD~~t~~W~~l~~~g~~P~~R~~hs~~~-~~~~Lyv~GG~~~~~~~~~~v~~y 229 (717)
++...++.+|+.|-. ..+++-+-...+|+.+.....+|.. ...++. -++.+|+.|.. ..+++-
T Consensus 84 ~i~~~~~~~~~~g~~-------g~i~~S~DgG~tW~~~~~~~~~~~~--~~~i~~~~~~~~~~~~~~-------g~v~~S 147 (327)
T 2xbg_A 84 SVSFQGNEGWIVGEP-------PIMLHTTDGGQSWSQIPLDPKLPGS--PRLIKALGNGSAEMITNV-------GAIYRT 147 (327)
T ss_dssp EEEEETTEEEEEEET-------TEEEEESSTTSSCEECCCCTTCSSC--EEEEEEEETTEEEEEETT-------CCEEEE
T ss_pred EEEecCCeEEEEECC-------CeEEEECCCCCCceECccccCCCCC--eEEEEEECCCCEEEEeCC-------ccEEEE
Confidence 455557888887532 1456544446789998642122222 233333 46788887641 235554
Q ss_pred EcCCCceEeccCCCCCCCCCcccEEEEECCcEEEEEcCCCCCCCCCeEEEEECC-CCcEEEeecCCCCCCCCcceEEEEE
Q 005043 230 DLKSLTWLPLHCTGTGPSPRSNHVAALYDDKNLLIFGGSSKSKTLNDLYSLDFE-TMIWTRIKIRGFHPSPRAGCCGVLC 308 (717)
Q Consensus 230 D~~t~~W~~l~~~g~~P~~R~~~aa~~~~~~~lyV~GG~~~~~~~ndv~~yd~~-t~~W~~v~~~g~~P~~R~~~sav~~ 308 (717)
+-...+|+.+.. +.+...+.++...+..+|++|.. ..+++-+-. ..+|+.+.. +.+...+.++..
T Consensus 148 ~DgG~tW~~~~~----~~~~~~~~~~~~~~~~~~~~g~~------G~~~~S~d~gG~tW~~~~~----~~~~~~~~~~~~ 213 (327)
T 2xbg_A 148 KDSGKNWQALVQ----EAIGVMRNLNRSPSGEYVAVSSR------GSFYSTWEPGQTAWEPHNR----TTSRRLHNMGFT 213 (327)
T ss_dssp SSTTSSEEEEEC----SCCCCEEEEEECTTSCEEEEETT------SSEEEEECTTCSSCEEEEC----CSSSCEEEEEEC
T ss_pred cCCCCCCEEeec----CCCcceEEEEEcCCCcEEEEECC------CcEEEEeCCCCCceeECCC----CCCCccceeEEC
Confidence 444568998852 22333445555545546666532 136665443 678999854 234444454443
Q ss_pred -CCEEEEEecCCCCCccCeEEEEECC-CCcEEEeecCCCCCCCCCcceEEEEEEeCCCcEEEEEcCC
Q 005043 309 -GTKWYIAGGGSRKKRHAETLIFDIL-KGEWSVAITSPSSSVTSNKGFTLVLVQHKEKDFLVAFGGI 373 (717)
Q Consensus 309 -~~~IyV~GG~~~~~~~~dv~~yD~~-t~~W~~l~~~p~~~~~~r~g~s~v~v~~~~~~~I~v~GG~ 373 (717)
++.+|+.+.. ..++..+.+ ..+|+.+...+ .+ ...++..+... .++.+|+.|+.
T Consensus 214 ~~g~~~~~~~~------G~~~~s~~D~G~tW~~~~~~~--~~-~~~~~~~v~~~--~~~~~~~~g~~ 269 (327)
T 2xbg_A 214 PDGRLWMIVNG------GKIAFSDPDNSENWGELLSPL--RR-NSVGFLDLAYR--TPNEVWLAGGA 269 (327)
T ss_dssp TTSCEEEEETT------TEEEEEETTEEEEECCCBCTT--SS-CCSCEEEEEES--SSSCEEEEEST
T ss_pred CCCCEEEEeCC------ceEEEecCCCCCeeEeccCCc--cc-CCcceEEEEec--CCCEEEEEeCC
Confidence 5788877642 135555433 56898865210 11 11223333332 24568888763
No 80
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=96.56 E-value=0.16 Score=59.25 Aligned_cols=231 Identities=9% Similarity=0.045 Sum_probs=116.6
Q ss_pred CCEEEEEcccCCCCCcccEEEEEcCCCceEEccccccCCCCCCCCCCCcccceEEEEE-CCEEEEEeccCCCCCCceEEE
Q 005043 98 GNKMIVVGGESGNGLLDDVQVLNFDRFSWTAASSKLYLSPSSLPLKIPACRGHSLISW-GKKVLLVGGKTDSGSDRVSVW 176 (717)
Q Consensus 98 ~~~lyV~GG~~~~~~~~~v~~yd~~t~~W~~l~~~~~~~~~~~~~~~p~r~~hs~v~~-~~~Iyv~GG~~~~~~~~~~v~ 176 (717)
++..+++|+.+ ..+.+||..+......-. .....-.+++.. ++..+++||.+ ..+.
T Consensus 24 ~~~~la~~~~~-----g~v~iwd~~~~~~~~~~~------------~~~~~v~~~~~s~~~~~l~~~~~d------g~i~ 80 (814)
T 3mkq_A 24 TEPWVLTTLYS-----GRVEIWNYETQVEVRSIQ------------VTETPVRAGKFIARKNWIIVGSDD------FRIR 80 (814)
T ss_dssp SSSEEEEEETT-----SEEEEEETTTTEEEEEEE------------CCSSCEEEEEEEGGGTEEEEEETT------SEEE
T ss_pred CCCEEEEEeCC-----CEEEEEECCCCceEEEEe------------cCCCcEEEEEEeCCCCEEEEEeCC------CeEE
Confidence 45566666643 358899988865433221 001111223322 56667777753 2689
Q ss_pred EEECCCCcEEEeeecCCCCCCceeeEEEEE-CCEEEEEccccCCCCCcCcEEEEEcCCC-ceEeccCCCCCCCCCcccEE
Q 005043 177 TFDTETECWSVVEAKGDIPVARSGHTVVRA-SSVLILFGGEDGKRRKLNDLHMFDLKSL-TWLPLHCTGTGPSPRSNHVA 254 (717)
Q Consensus 177 ~yD~~t~~W~~l~~~g~~P~~R~~hs~~~~-~~~Lyv~GG~~~~~~~~~~v~~yD~~t~-~W~~l~~~g~~P~~R~~~aa 254 (717)
+||..++.....-. .....-.+++.. ++..++.|+.+ ..+.+||+.++ .....- ......-.++
T Consensus 81 vw~~~~~~~~~~~~----~~~~~v~~~~~s~~~~~l~~~~~d------g~i~vw~~~~~~~~~~~~----~~~~~~v~~~ 146 (814)
T 3mkq_A 81 VFNYNTGEKVVDFE----AHPDYIRSIAVHPTKPYVLSGSDD------LTVKLWNWENNWALEQTF----EGHEHFVMCV 146 (814)
T ss_dssp EEETTTCCEEEEEE----CCSSCEEEEEECSSSSEEEEEETT------SEEEEEEGGGTSEEEEEE----ECCSSCEEEE
T ss_pred EEECCCCcEEEEEe----cCCCCEEEEEEeCCCCEEEEEcCC------CEEEEEECCCCceEEEEE----cCCCCcEEEE
Confidence 99998887644321 111112223332 45566666643 34888898765 222221 0111112233
Q ss_pred EEEC-CcEEEEEcCCCCCCCCCeEEEEECCCCcEEEeecCCCCCCCCcceEEEEE---CCEEEEEecCCCCCccCeEEEE
Q 005043 255 ALYD-DKNLLIFGGSSKSKTLNDLYSLDFETMIWTRIKIRGFHPSPRAGCCGVLC---GTKWYIAGGGSRKKRHAETLIF 330 (717)
Q Consensus 255 ~~~~-~~~lyV~GG~~~~~~~ndv~~yd~~t~~W~~v~~~g~~P~~R~~~sav~~---~~~IyV~GG~~~~~~~~dv~~y 330 (717)
+... +..+++.|+.++ .+.+||+.+..-...... ........++.. ++.++++|+.++ .+.+|
T Consensus 147 ~~~p~~~~~l~~~~~dg-----~v~vwd~~~~~~~~~~~~---~~~~~v~~~~~~~~~~~~~l~~~~~dg-----~i~~~ 213 (814)
T 3mkq_A 147 AFNPKDPSTFASGCLDR-----TVKVWSLGQSTPNFTLTT---GQERGVNYVDYYPLPDKPYMITASDDL-----TIKIW 213 (814)
T ss_dssp EEETTEEEEEEEEETTS-----EEEEEETTCSSCSEEEEC---CCTTCCCEEEECCSTTCCEEEEECTTS-----EEEEE
T ss_pred EEEcCCCCEEEEEeCCC-----eEEEEECCCCcceeEEec---CCCCCEEEEEEEECCCCCEEEEEeCCC-----EEEEE
Confidence 4443 344677777653 589999865443222211 111222222222 677788887553 58999
Q ss_pred ECCCCcEEEeecCCCCCCCCCcceEEEEEEeCCCcEEEEEcCCCCCCCCeEEEEEccCCc
Q 005043 331 DILKGEWSVAITSPSSSVTSNKGFTLVLVQHKEKDFLVAFGGIKKEPSNQVEVLSIEKNE 390 (717)
Q Consensus 331 D~~t~~W~~l~~~p~~~~~~r~g~s~v~v~~~~~~~I~v~GG~~~~~~n~v~vyd~~~~e 390 (717)
|+.+..-...... .......+.+.. ++.+++.||.++ .+.+||+.+.+
T Consensus 214 d~~~~~~~~~~~~------~~~~v~~~~~~~--~~~~l~~~~~dg----~v~vwd~~~~~ 261 (814)
T 3mkq_A 214 DYQTKSCVATLEG------HMSNVSFAVFHP--TLPIIISGSEDG----TLKIWNSSTYK 261 (814)
T ss_dssp ETTTTEEEEEEEC------CSSCEEEEEECS--SSSEEEEEETTS----CEEEEETTTCS
T ss_pred ECCCCcEEEEEcC------CCCCEEEEEEcC--CCCEEEEEeCCC----eEEEEECCCCc
Confidence 9887654332211 111233333432 333666776543 46777776543
No 81
>1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B*
Probab=96.55 E-value=0.29 Score=50.05 Aligned_cols=160 Identities=14% Similarity=0.122 Sum_probs=79.2
Q ss_pred CCEEEEEcccCCCCCcccEEEEEcCCCceEEccccccCCCCCCCCCCCcccceEEEEE--CCEEEEEeccCCCCCCceEE
Q 005043 98 GNKMIVVGGESGNGLLDDVQVLNFDRFSWTAASSKLYLSPSSLPLKIPACRGHSLISW--GKKVLLVGGKTDSGSDRVSV 175 (717)
Q Consensus 98 ~~~lyV~GG~~~~~~~~~v~~yd~~t~~W~~l~~~~~~~~~~~~~~~p~r~~hs~v~~--~~~Iyv~GG~~~~~~~~~~v 175 (717)
++++|+.++.+ +.++++|+.+.+....-.. +. ....+.++.. ++.+|+.++.. ..+
T Consensus 10 ~~~~~v~~~~~-----~~v~~~d~~~~~~~~~~~~----------~~-~~~~~~~~~s~dg~~~~v~~~~~------~~i 67 (349)
T 1jmx_B 10 GHEYMIVTNYP-----NNLHVVDVASDTVYKSCVM----------PD-KFGPGTAMMAPDNRTAYVLNNHY------GDI 67 (349)
T ss_dssp TCEEEEEEETT-----TEEEEEETTTTEEEEEEEC----------SS-CCSSCEEEECTTSSEEEEEETTT------TEE
T ss_pred CCEEEEEeCCC-----CeEEEEECCCCcEEEEEec----------CC-CCCCceeEECCCCCEEEEEeCCC------CcE
Confidence 56788887654 3689999988765433221 11 0011233333 34677776432 369
Q ss_pred EEEECCCCcEEEeeecCCCCC--CceeeEEEEE-CC-EEEEEccc--cCCCC---CcCcEEEEEcCCCceEeccCCCCCC
Q 005043 176 WTFDTETECWSVVEAKGDIPV--ARSGHTVVRA-SS-VLILFGGE--DGKRR---KLNDLHMFDLKSLTWLPLHCTGTGP 246 (717)
Q Consensus 176 ~~yD~~t~~W~~l~~~g~~P~--~R~~hs~~~~-~~-~Lyv~GG~--~~~~~---~~~~v~~yD~~t~~W~~l~~~g~~P 246 (717)
++||+.+.+....-..+..+. ...-+.++.. ++ .||+.+.. ..... ..+.+++||+.+++-..... ..+
T Consensus 68 ~~~d~~t~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~--~~~ 145 (349)
T 1jmx_B 68 YGIDLDTCKNTFHANLSSVPGEVGRSMYSFAISPDGKEVYATVNPTQRLNDHYVVKPPRLEVFSTADGLEAKPVR--TFP 145 (349)
T ss_dssp EEEETTTTEEEEEEESCCSTTEEEECSSCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEEGGGGGGBCCSE--EEE
T ss_pred EEEeCCCCcEEEEEEcccccccccccccceEECCCCCEEEEEcccccccccccccCCCeEEEEECCCccccceee--ecc
Confidence 999999887543322111111 1112233333 34 55554421 00000 12579999998743221110 111
Q ss_pred CCCcccEEEEE-CCcEEEEEcCCCCCCCCCeEEEEECCCCcEEEe
Q 005043 247 SPRSNHVAALY-DDKNLLIFGGSSKSKTLNDLYSLDFETMIWTRI 290 (717)
Q Consensus 247 ~~R~~~aa~~~-~~~~lyV~GG~~~~~~~ndv~~yd~~t~~W~~v 290 (717)
.++.-.+++.. +++ +|+.++ ++++||+.+..-...
T Consensus 146 ~~~~~~~~~~s~dg~-l~~~~~--------~i~~~d~~~~~~~~~ 181 (349)
T 1jmx_B 146 MPRQVYLMRAADDGS-LYVAGP--------DIYKMDVKTGKYTVA 181 (349)
T ss_dssp CCSSCCCEEECTTSC-EEEESS--------SEEEECTTTCCEEEE
T ss_pred CCCcccceeECCCCc-EEEccC--------cEEEEeCCCCceecc
Confidence 22222333343 445 777432 389999887765443
No 82
>2z3z_A Dipeptidyl aminopeptidase IV; peptidase family S9, prolyl oligopeptidase family, serine PR proline-specific peptidase, hydrolase; HET: AIO; 1.95A {Porphyromonas gingivalis} PDB: 2z3w_A* 2d5l_A 2eep_A* 2dcm_A*
Probab=96.52 E-value=0.25 Score=56.83 Aligned_cols=196 Identities=11% Similarity=0.039 Sum_probs=99.3
Q ss_pred ceEEEEEECCCCcEEEeeecCCCCCCceeeEEEEE-CCEEEEEccccCCCCCcCcEEEEEcCCC-ceEeccCCCCCCCCC
Q 005043 172 RVSVWTFDTETECWSVVEAKGDIPVARSGHTVVRA-SSVLILFGGEDGKRRKLNDLHMFDLKSL-TWLPLHCTGTGPSPR 249 (717)
Q Consensus 172 ~~~v~~yD~~t~~W~~l~~~g~~P~~R~~hs~~~~-~~~Lyv~GG~~~~~~~~~~v~~yD~~t~-~W~~l~~~g~~P~~R 249 (717)
...+++||+.+..-..+.. .......-..++.. +++.++++..+.. .....++.+|+.+. .+..+..... +...
T Consensus 234 ~~~l~~~d~~~~~~~~~~~--~~~~~~~~~~~~~spdg~~l~~~~~~~~-~~~~~v~~~d~~~g~~~~~~~~~~~-~~~~ 309 (706)
T 2z3z_A 234 HVTVGIYHLATGKTVYLQT--GEPKEKFLTNLSWSPDENILYVAEVNRA-QNECKVNAYDAETGRFVRTLFVETD-KHYV 309 (706)
T ss_dssp EEEEEEEETTTTEEEECCC--CSCTTCEEEEEEECTTSSEEEEEEECTT-SCEEEEEEEETTTCCEEEEEEEEEC-SSCC
T ss_pred eeEEEEEECCCCceEeecc--CCCCceeEeeEEEECCCCEEEEEEeCCC-CCeeEEEEEECCCCceeeEEEEccC-CCeE
Confidence 4579999999987665542 11112222233332 4554445444332 23457999999988 6665531100 0000
Q ss_pred -cccEEEEEC--CcEEEEEcCCCCCCCCCeEEEEECCCCcEEEeecCCCCCCCCcceEEEEE--C-CEEEEEecCCCCCc
Q 005043 250 -SNHVAALYD--DKNLLIFGGSSKSKTLNDLYSLDFETMIWTRIKIRGFHPSPRAGCCGVLC--G-TKWYIAGGGSRKKR 323 (717)
Q Consensus 250 -~~~aa~~~~--~~~lyV~GG~~~~~~~ndv~~yd~~t~~W~~v~~~g~~P~~R~~~sav~~--~-~~IyV~GG~~~~~~ 323 (717)
....++... +..+++.+..++ ...+|.+|........+... .......+.+ + +.||+.+..+ ...
T Consensus 310 ~~~~~~~~sp~~dg~~l~~~~~~g---~~~l~~~~~~~~~~~~l~~~-----~~~v~~~~~~spdg~~l~~~~~~~-~~~ 380 (706)
T 2z3z_A 310 EPLHPLTFLPGSNNQFIWQSRRDG---WNHLYLYDTTGRLIRQVTKG-----EWEVTNFAGFDPKGTRLYFESTEA-SPL 380 (706)
T ss_dssp CCCSCCEECTTCSSEEEEEECTTS---SCEEEEEETTSCEEEECCCS-----SSCEEEEEEECTTSSEEEEEESSS-CTT
T ss_pred CccCCceeecCCCCEEEEEEccCC---ccEEEEEECCCCEEEecCCC-----CeEEEeeeEEcCCCCEEEEEecCC-CCc
Confidence 011223333 333555554432 35799999877777776431 1111121223 3 4566655432 222
Q ss_pred cCeEEEEECCCCcEEEeecCCCCCCCCCcceEEEEEEeCCCcEEEEEcCCCCCCCCeEEEEEccCCc
Q 005043 324 HAETLIFDILKGEWSVAITSPSSSVTSNKGFTLVLVQHKEKDFLVAFGGIKKEPSNQVEVLSIEKNE 390 (717)
Q Consensus 324 ~~dv~~yD~~t~~W~~l~~~p~~~~~~r~g~s~v~v~~~~~~~I~v~GG~~~~~~n~v~vyd~~~~e 390 (717)
...+|.+|+.+...+.+.. ..+...+.+.. ++..+++...+......++++|+.+.+
T Consensus 381 ~~~l~~~d~~~~~~~~l~~--------~~~~~~~~~sp--dg~~l~~~~~~~~~p~~i~l~d~~~~~ 437 (706)
T 2z3z_A 381 ERHFYCIDIKGGKTKDLTP--------ESGMHRTQLSP--DGSAIIDIFQSPTVPRKVTVTNIGKGS 437 (706)
T ss_dssp CBEEEEEETTCCCCEESCC--------SSSEEEEEECT--TSSEEEEEEECSSCSCEEEEEESSSCE
T ss_pred eEEEEEEEcCCCCceeccC--------CCceEEEEECC--CCCEEEEEecCCCCCcEEEEEECCCCe
Confidence 3578999998877665531 11223344432 233344444333334578888877654
No 83
>2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: b.68.4.1 c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A
Probab=96.51 E-value=0.11 Score=56.20 Aligned_cols=201 Identities=9% Similarity=-0.033 Sum_probs=108.2
Q ss_pred CCEEEEEcccCCCCCcccEEEEEcCCCceEEccccccCCCCCCCCCCCcccceEEEEE-CC-EEEEEeccCCCCCCceEE
Q 005043 98 GNKMIVVGGESGNGLLDDVQVLNFDRFSWTAASSKLYLSPSSLPLKIPACRGHSLISW-GK-KVLLVGGKTDSGSDRVSV 175 (717)
Q Consensus 98 ~~~lyV~GG~~~~~~~~~v~~yd~~t~~W~~l~~~~~~~~~~~~~~~p~r~~hs~v~~-~~-~Iyv~GG~~~~~~~~~~v 175 (717)
+++.+++++.++. ...++++|+.+.+...+... +. ...+.+.. ++ .|++.+.... ...+
T Consensus 189 dg~~la~~s~~~~--~~~i~~~d~~tg~~~~l~~~------------~~-~~~~~~~spdg~~la~~~~~~g----~~~i 249 (415)
T 2hqs_A 189 DGSKLAYVTFESG--RSALVIQTLANGAVRQVASF------------PR-HNGAPAFSPDGSKLAFALSKTG----SLNL 249 (415)
T ss_dssp TSSEEEEEECTTS--SCEEEEEETTTCCEEEEECC------------SS-CEEEEEECTTSSEEEEEECTTS----SCEE
T ss_pred CCCEEEEEEecCC--CcEEEEEECCCCcEEEeecC------------CC-cccCEEEcCCCCEEEEEEecCC----CceE
Confidence 4555555554321 24789999998877665431 11 11222222 44 4554544321 2369
Q ss_pred EEEECCCCcEEEeeecCCCCCCceeeEEEEE-CCEEEEEccccCCCCCcCcEEEEEcCCCceEeccCCCCCCCCCcccEE
Q 005043 176 WTFDTETECWSVVEAKGDIPVARSGHTVVRA-SSVLILFGGEDGKRRKLNDLHMFDLKSLTWLPLHCTGTGPSPRSNHVA 254 (717)
Q Consensus 176 ~~yD~~t~~W~~l~~~g~~P~~R~~hs~~~~-~~~Lyv~GG~~~~~~~~~~v~~yD~~t~~W~~l~~~g~~P~~R~~~aa 254 (717)
|+||+.+.....+.. .+ ......+.. +++.+++++.... ...+|.+|+.+..-..+.. ........
T Consensus 250 ~~~d~~~~~~~~l~~---~~--~~~~~~~~spdg~~l~~~s~~~g---~~~i~~~d~~~~~~~~l~~-----~~~~~~~~ 316 (415)
T 2hqs_A 250 YVMDLASGQIRQVTD---GR--SNNTEPTWFPDSQNLAFTSDQAG---RPQVYKVNINGGAPQRITW-----EGSQNQDA 316 (415)
T ss_dssp EEEETTTCCEEECCC---CS--SCEEEEEECTTSSEEEEEECTTS---SCEEEEEETTSSCCEECCC-----SSSEEEEE
T ss_pred EEEECCCCCEEeCcC---CC--CcccceEECCCCCEEEEEECCCC---CcEEEEEECCCCCEEEEec-----CCCcccCe
Confidence 999999988766542 11 112222332 4554555443221 2579999998877555531 11222233
Q ss_pred EEE-CCcEEEEEcCCCCCCCCCeEEEEECCCCcEEEeecCCCCCCCCcceEEEE-ECCEEEEEecCCCCCccCeEEEEEC
Q 005043 255 ALY-DDKNLLIFGGSSKSKTLNDLYSLDFETMIWTRIKIRGFHPSPRAGCCGVL-CGTKWYIAGGGSRKKRHAETLIFDI 332 (717)
Q Consensus 255 ~~~-~~~~lyV~GG~~~~~~~ndv~~yd~~t~~W~~v~~~g~~P~~R~~~sav~-~~~~IyV~GG~~~~~~~~dv~~yD~ 332 (717)
+.. +++ .+++++.... ...++.+|+.+.....+... . ...+.+. -+++.+++++.... ...++.+|+
T Consensus 317 ~~spdG~-~l~~~~~~~g--~~~i~~~d~~~~~~~~l~~~-----~-~~~~~~~spdg~~l~~~s~~~~--~~~l~~~d~ 385 (415)
T 2hqs_A 317 DVSSDGK-FMVMVSSNGG--QQHIAKQDLATGGVQVLSST-----F-LDETPSLAPNGTMVIYSSSQGM--GSVLNLVST 385 (415)
T ss_dssp EECTTSS-EEEEEEECSS--CEEEEEEETTTCCEEECCCS-----S-SCEEEEECTTSSEEEEEEEETT--EEEEEEEET
T ss_pred EECCCCC-EEEEEECcCC--ceEEEEEECCCCCEEEecCC-----C-CcCCeEEcCCCCEEEEEEcCCC--ccEEEEEEC
Confidence 333 455 4444443221 34799999999988766432 1 2222222 25666666664432 246999999
Q ss_pred CCCcEEEee
Q 005043 333 LKGEWSVAI 341 (717)
Q Consensus 333 ~t~~W~~l~ 341 (717)
.......+.
T Consensus 386 ~g~~~~~l~ 394 (415)
T 2hqs_A 386 DGRFKARLP 394 (415)
T ss_dssp TSCCEEECC
T ss_pred CCCcEEEee
Confidence 887776654
No 84
>3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A
Probab=96.50 E-value=1.1 Score=47.29 Aligned_cols=189 Identities=7% Similarity=0.005 Sum_probs=95.4
Q ss_pred CCEEEEEcccCCCCCcccEEEEEcCCCce-EEccccccCCCCCCCCCCCcccceEEEEE-CCEEEEEeccCCCCCCceEE
Q 005043 98 GNKMIVVGGESGNGLLDDVQVLNFDRFSW-TAASSKLYLSPSSLPLKIPACRGHSLISW-GKKVLLVGGKTDSGSDRVSV 175 (717)
Q Consensus 98 ~~~lyV~GG~~~~~~~~~v~~yd~~t~~W-~~l~~~~~~~~~~~~~~~p~r~~hs~v~~-~~~Iyv~GG~~~~~~~~~~v 175 (717)
++.+++.|+.++ .+.+||+.+..- ..+.. ....-.+++.. ++..++.|+.+. .+
T Consensus 150 ~~~~l~s~s~d~-----~i~iwd~~~~~~~~~~~~-------------h~~~v~~~~~~~~~~~l~s~~~d~------~v 205 (420)
T 3vl1_A 150 SGEALISSSQDM-----QLKIWSVKDGSNPRTLIG-------------HRATVTDIAIIDRGRNVLSASLDG------TI 205 (420)
T ss_dssp TSSEEEEEETTS-----EEEEEETTTCCCCEEEEC-------------CSSCEEEEEEETTTTEEEEEETTS------CE
T ss_pred CCCEEEEEeCCC-----eEEEEeCCCCcCceEEcC-------------CCCcEEEEEEcCCCCEEEEEcCCC------cE
Confidence 455666776543 588999876532 11111 01111233333 556666777532 48
Q ss_pred EEEECCCCcEEEeeecCCCCCCceeeEEEE----------------------ECCEEEEEccccCCCCCcCcEEEEEcCC
Q 005043 176 WTFDTETECWSVVEAKGDIPVARSGHTVVR----------------------ASSVLILFGGEDGKRRKLNDLHMFDLKS 233 (717)
Q Consensus 176 ~~yD~~t~~W~~l~~~g~~P~~R~~hs~~~----------------------~~~~Lyv~GG~~~~~~~~~~v~~yD~~t 233 (717)
.+||+.+.+-...-.....+.. .-.+++. -++.+++.|+.++ .+.+||+.+
T Consensus 206 ~iwd~~~~~~~~~~~~~~~~~~-~v~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg------~i~i~d~~~ 278 (420)
T 3vl1_A 206 RLWECGTGTTIHTFNRKENPHD-GVNSIALFVGTDRQLHEISTSKKNNLEFGTYGKYVIAGHVSG------VITVHNVFS 278 (420)
T ss_dssp EEEETTTTEEEEEECBTTBTTC-CEEEEEEEECCCSSCGGGCCCCCCTTCSSCTTEEEEEEETTS------CEEEEETTT
T ss_pred EEeECCCCceeEEeecCCCCCC-CccEEEEecCCcceeeecccCcccceEEcCCCCEEEEEcCCC------eEEEEECCC
Confidence 8889887753322211000111 1111111 1456777776543 488999987
Q ss_pred CceEeccCCCCCCCCCcccEEEEECCcE-EEEEcCCCCCCCCCeEEEEECCCCc--EEEeecCCCCCCCCcceEEEEECC
Q 005043 234 LTWLPLHCTGTGPSPRSNHVAALYDDKN-LLIFGGSSKSKTLNDLYSLDFETMI--WTRIKIRGFHPSPRAGCCGVLCGT 310 (717)
Q Consensus 234 ~~W~~l~~~g~~P~~R~~~aa~~~~~~~-lyV~GG~~~~~~~ndv~~yd~~t~~--W~~v~~~g~~P~~R~~~sav~~~~ 310 (717)
..-.... .......-.+++...+.. +++.|+.++ .+.+||+.+.. -..+... ....-.+++..++
T Consensus 279 ~~~~~~~---~~~~~~~v~~~~~~~~~~~~l~~g~~dg-----~i~vwd~~~~~~~~~~~~~~----~~~~v~~~~~~~~ 346 (420)
T 3vl1_A 279 KEQTIQL---PSKFTCSCNSLTVDGNNANYIYAGYENG-----MLAQWDLRSPECPVGEFLIN----EGTPINNVYFAAG 346 (420)
T ss_dssp CCEEEEE---CCTTSSCEEEEEECSSCTTEEEEEETTS-----EEEEEETTCTTSCSEEEEES----TTSCEEEEEEETT
T ss_pred CceeEEc---ccccCCCceeEEEeCCCCCEEEEEeCCC-----eEEEEEcCCCcCchhhhhcc----CCCCceEEEeCCC
Confidence 6533221 111111222333333332 666776543 59999998753 2223221 1122233344578
Q ss_pred EEEEEecCCCCCccCeEEEEECCC
Q 005043 311 KWYIAGGGSRKKRHAETLIFDILK 334 (717)
Q Consensus 311 ~IyV~GG~~~~~~~~dv~~yD~~t 334 (717)
++++.|+.++ .+.+||+..
T Consensus 347 ~~l~s~~~d~-----~v~iw~~~~ 365 (420)
T 3vl1_A 347 ALFVSSGFDT-----SIKLDIISD 365 (420)
T ss_dssp EEEEEETTTE-----EEEEEEECC
T ss_pred CEEEEecCCc-----cEEEEeccC
Confidence 8888888653 377787655
No 85
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=96.48 E-value=0.56 Score=54.56 Aligned_cols=191 Identities=14% Similarity=0.069 Sum_probs=98.7
Q ss_pred CCEEEEEcccCCCCCcccEEEEEcCCCceEEccccccCCCCCCCCCCCcccceEEEEE-CCEEEEEeccCCCCCCceEEE
Q 005043 98 GNKMIVVGGESGNGLLDDVQVLNFDRFSWTAASSKLYLSPSSLPLKIPACRGHSLISW-GKKVLLVGGKTDSGSDRVSVW 176 (717)
Q Consensus 98 ~~~lyV~GG~~~~~~~~~v~~yd~~t~~W~~l~~~~~~~~~~~~~~~p~r~~hs~v~~-~~~Iyv~GG~~~~~~~~~~v~ 176 (717)
++..+++||.++ .+.+||..+......-.. . ...-.+++.. ++..++.|+.+ ..+.
T Consensus 66 ~~~~l~~~~~dg-----~i~vw~~~~~~~~~~~~~-----------~-~~~v~~~~~s~~~~~l~~~~~d------g~i~ 122 (814)
T 3mkq_A 66 RKNWIIVGSDDF-----RIRVFNYNTGEKVVDFEA-----------H-PDYIRSIAVHPTKPYVLSGSDD------LTVK 122 (814)
T ss_dssp GGTEEEEEETTS-----EEEEEETTTCCEEEEEEC-----------C-SSCEEEEEECSSSSEEEEEETT------SEEE
T ss_pred CCCEEEEEeCCC-----eEEEEECCCCcEEEEEec-----------C-CCCEEEEEEeCCCCEEEEEcCC------CEEE
Confidence 455677776542 589999988765433220 0 1111222222 45556666643 2588
Q ss_pred EEECCCC-cEEEeeecCCCCCCceeeEEEEE--CCEEEEEccccCCCCCcCcEEEEEcCCCceEeccCCCCCCCCCcccE
Q 005043 177 TFDTETE-CWSVVEAKGDIPVARSGHTVVRA--SSVLILFGGEDGKRRKLNDLHMFDLKSLTWLPLHCTGTGPSPRSNHV 253 (717)
Q Consensus 177 ~yD~~t~-~W~~l~~~g~~P~~R~~hs~~~~--~~~Lyv~GG~~~~~~~~~~v~~yD~~t~~W~~l~~~g~~P~~R~~~a 253 (717)
+||..++ .....-. .....-.+++.. ++.+++.|+.+ ..+.+||+.+..-.... ..........
T Consensus 123 vw~~~~~~~~~~~~~----~~~~~v~~~~~~p~~~~~l~~~~~d------g~v~vwd~~~~~~~~~~---~~~~~~~v~~ 189 (814)
T 3mkq_A 123 LWNWENNWALEQTFE----GHEHFVMCVAFNPKDPSTFASGCLD------RTVKVWSLGQSTPNFTL---TTGQERGVNY 189 (814)
T ss_dssp EEEGGGTSEEEEEEE----CCSSCEEEEEEETTEEEEEEEEETT------SEEEEEETTCSSCSEEE---ECCCTTCCCE
T ss_pred EEECCCCceEEEEEc----CCCCcEEEEEEEcCCCCEEEEEeCC------CeEEEEECCCCcceeEE---ecCCCCCEEE
Confidence 8898776 3322221 111122233343 35677777654 34888998655422211 1111122223
Q ss_pred EEEE---CCcEEEEEcCCCCCCCCCeEEEEECCCCcEEEeecCCCCCCCCcceEEEEE-CCEEEEEecCCCCCccCeEEE
Q 005043 254 AALY---DDKNLLIFGGSSKSKTLNDLYSLDFETMIWTRIKIRGFHPSPRAGCCGVLC-GTKWYIAGGGSRKKRHAETLI 329 (717)
Q Consensus 254 a~~~---~~~~lyV~GG~~~~~~~ndv~~yd~~t~~W~~v~~~g~~P~~R~~~sav~~-~~~IyV~GG~~~~~~~~dv~~ 329 (717)
++.. ++. +++.|+.++ .+..||..+..-...-.. . .....+++.. ++.+++.|+.++. +.+
T Consensus 190 ~~~~~~~~~~-~l~~~~~dg-----~i~~~d~~~~~~~~~~~~---~-~~~v~~~~~~~~~~~l~~~~~dg~-----v~v 254 (814)
T 3mkq_A 190 VDYYPLPDKP-YMITASDDL-----TIKIWDYQTKSCVATLEG---H-MSNVSFAVFHPTLPIIISGSEDGT-----LKI 254 (814)
T ss_dssp EEECCSTTCC-EEEEECTTS-----EEEEEETTTTEEEEEEEC---C-SSCEEEEEECSSSSEEEEEETTSC-----EEE
T ss_pred EEEEECCCCC-EEEEEeCCC-----EEEEEECCCCcEEEEEcC---C-CCCEEEEEEcCCCCEEEEEeCCCe-----EEE
Confidence 3333 344 677777643 599999887654332211 1 1111222222 5667788876543 889
Q ss_pred EECCCCcEEE
Q 005043 330 FDILKGEWSV 339 (717)
Q Consensus 330 yD~~t~~W~~ 339 (717)
||+.+..-..
T Consensus 255 wd~~~~~~~~ 264 (814)
T 3mkq_A 255 WNSSTYKVEK 264 (814)
T ss_dssp EETTTCSEEE
T ss_pred EECCCCcEEE
Confidence 9998765444
No 86
>3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A
Probab=96.46 E-value=0.42 Score=50.53 Aligned_cols=193 Identities=12% Similarity=0.075 Sum_probs=99.9
Q ss_pred CCEEEEEeccCCCCCCceEEEEEECCCCcEEEeeecCCCCCCceeeEEEEE-CCEEEEEccccCCCCCcCcEEEEEcCCC
Q 005043 156 GKKVLLVGGKTDSGSDRVSVWTFDTETECWSVVEAKGDIPVARSGHTVVRA-SSVLILFGGEDGKRRKLNDLHMFDLKSL 234 (717)
Q Consensus 156 ~~~Iyv~GG~~~~~~~~~~v~~yD~~t~~W~~l~~~g~~P~~R~~hs~~~~-~~~Lyv~GG~~~~~~~~~~v~~yD~~t~ 234 (717)
++.+++.|+.+. .+.+||+.+..-...- ......-.+++.. ++.+++.|+.+ ..+.+||+.+.
T Consensus 108 ~~~~l~~~~~dg------~i~iwd~~~~~~~~~~----~~h~~~v~~~~~~~~~~~l~s~s~d------~~i~iwd~~~~ 171 (420)
T 3vl1_A 108 QMRRFILGTTEG------DIKVLDSNFNLQREID----QAHVSEITKLKFFPSGEALISSSQD------MQLKIWSVKDG 171 (420)
T ss_dssp SSCEEEEEETTS------CEEEECTTSCEEEEET----TSSSSCEEEEEECTTSSEEEEEETT------SEEEEEETTTC
T ss_pred CCCEEEEEECCC------CEEEEeCCCcceeeec----ccccCccEEEEECCCCCEEEEEeCC------CeEEEEeCCCC
Confidence 677788887642 5888998876544331 1122222333333 45677777654 34888998765
Q ss_pred ceE-eccCCCCCCCCCcccEEEEECCcEEEEEcCCCCCCCCCeEEEEECCCCcEEEeecCCCCCCCCcceEEEE------
Q 005043 235 TWL-PLHCTGTGPSPRSNHVAALYDDKNLLIFGGSSKSKTLNDLYSLDFETMIWTRIKIRGFHPSPRAGCCGVL------ 307 (717)
Q Consensus 235 ~W~-~l~~~g~~P~~R~~~aa~~~~~~~lyV~GG~~~~~~~ndv~~yd~~t~~W~~v~~~g~~P~~R~~~sav~------ 307 (717)
+-. .+. . ....-.+++...+..+++.|+.++ .+..||+.+..-...-.....+. ....+++.
T Consensus 172 ~~~~~~~---~--h~~~v~~~~~~~~~~~l~s~~~d~-----~v~iwd~~~~~~~~~~~~~~~~~-~~v~~~~~~~~~~~ 240 (420)
T 3vl1_A 172 SNPRTLI---G--HRATVTDIAIIDRGRNVLSASLDG-----TIRLWECGTGTTIHTFNRKENPH-DGVNSIALFVGTDR 240 (420)
T ss_dssp CCCEEEE---C--CSSCEEEEEEETTTTEEEEEETTS-----CEEEEETTTTEEEEEECBTTBTT-CCEEEEEEEECCCS
T ss_pred cCceEEc---C--CCCcEEEEEEcCCCCEEEEEcCCC-----cEEEeECCCCceeEEeecCCCCC-CCccEEEEecCCcc
Confidence 421 111 0 111122334443333666777654 48999998765433322110011 11111111
Q ss_pred ----------------ECCEEEEEecCCCCCccCeEEEEECCCCcEEEeecCCCCCCCCCcceEEEEEEeCCCcEEEEEc
Q 005043 308 ----------------CGTKWYIAGGGSRKKRHAETLIFDILKGEWSVAITSPSSSVTSNKGFTLVLVQHKEKDFLVAFG 371 (717)
Q Consensus 308 ----------------~~~~IyV~GG~~~~~~~~dv~~yD~~t~~W~~l~~~p~~~~~~r~g~s~v~v~~~~~~~I~v~G 371 (717)
-++++++.|+.++. +.+||+.+..-.... ... .......+.+.. ++..+++.|
T Consensus 241 ~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~-----i~i~d~~~~~~~~~~--~~~---~~~~v~~~~~~~-~~~~~l~~g 309 (420)
T 3vl1_A 241 QLHEISTSKKNNLEFGTYGKYVIAGHVSGV-----ITVHNVFSKEQTIQL--PSK---FTCSCNSLTVDG-NNANYIYAG 309 (420)
T ss_dssp SCGGGCCCCCCTTCSSCTTEEEEEEETTSC-----EEEEETTTCCEEEEE--CCT---TSSCEEEEEECS-SCTTEEEEE
T ss_pred eeeecccCcccceEEcCCCCEEEEEcCCCe-----EEEEECCCCceeEEc--ccc---cCCCceeEEEeC-CCCCEEEEE
Confidence 25778888876544 899999876533322 111 111233334432 233266667
Q ss_pred CCCCCCCCeEEEEEccCCc
Q 005043 372 GIKKEPSNQVEVLSIEKNE 390 (717)
Q Consensus 372 G~~~~~~n~v~vyd~~~~e 390 (717)
+.++ .+.+||+.+.+
T Consensus 310 ~~dg----~i~vwd~~~~~ 324 (420)
T 3vl1_A 310 YENG----MLAQWDLRSPE 324 (420)
T ss_dssp ETTS----EEEEEETTCTT
T ss_pred eCCC----eEEEEEcCCCc
Confidence 6542 68999988764
No 87
>4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis}
Probab=96.45 E-value=0.16 Score=53.52 Aligned_cols=188 Identities=11% Similarity=0.041 Sum_probs=94.6
Q ss_pred CCEEEEEeccCCCCCCceEEEEEECCCCcEEEeeecCCCCCCceeeEEEEE--CCEEEEEccccCCCCCcCcEEEEEcCC
Q 005043 156 GKKVLLVGGKTDSGSDRVSVWTFDTETECWSVVEAKGDIPVARSGHTVVRA--SSVLILFGGEDGKRRKLNDLHMFDLKS 233 (717)
Q Consensus 156 ~~~Iyv~GG~~~~~~~~~~v~~yD~~t~~W~~l~~~g~~P~~R~~hs~~~~--~~~Lyv~GG~~~~~~~~~~v~~yD~~t 233 (717)
+++.++.|+.+. .+.+||+.+.+-...-. .... .-.+++.. ++.+++.||.++ .+.+||+.+
T Consensus 150 dg~~l~sgs~dg------~v~iwd~~~~~~~~~~~---~h~~-~v~~v~~s~~~~~~~~s~~~dg------~v~~wd~~~ 213 (357)
T 4g56_B 150 DGTQAVSGGKDF------SVKVWDLSQKAVLKSYN---AHSS-EVNCVAACPGKDTIFLSCGEDG------RILLWDTRK 213 (357)
T ss_dssp SSSEEEEEETTS------CEEEEETTTTEEEEEEC---CCSS-CEEEEEECTTCSSCEEEEETTS------CEEECCTTS
T ss_pred CCCEEEEEeCCC------eEEEEECCCCcEEEEEc---CCCC-CEEEEEEccCCCceeeeeccCC------ceEEEECCC
Confidence 566777777642 48889998876443221 1111 11223332 235777777553 377888876
Q ss_pred CceEeccCCCCCCCCCccc-EEEEE-CCcEEEEEcCCCCCCCCCeEEEEECCCCcEEEeecCCCCCCCCcceEEEEE--C
Q 005043 234 LTWLPLHCTGTGPSPRSNH-VAALY-DDKNLLIFGGSSKSKTLNDLYSLDFETMIWTRIKIRGFHPSPRAGCCGVLC--G 309 (717)
Q Consensus 234 ~~W~~l~~~g~~P~~R~~~-aa~~~-~~~~lyV~GG~~~~~~~ndv~~yd~~t~~W~~v~~~g~~P~~R~~~sav~~--~ 309 (717)
.+-.... ......... +++.. ++..+++.|+.++ .|..||+.+..-...- ........++.+ +
T Consensus 214 ~~~~~~~---~~~~~~~~v~~v~~sp~~~~~la~g~~d~-----~i~~wd~~~~~~~~~~-----~~~~~~v~~l~~sp~ 280 (357)
T 4g56_B 214 PKPATRI---DFCASDTIPTSVTWHPEKDDTFACGDETG-----NVSLVNIKNPDSAQTS-----AVHSQNITGLAYSYH 280 (357)
T ss_dssp SSCBCBC---CCTTCCSCEEEEEECTTSTTEEEEEESSS-----CEEEEESSCGGGCEEE-----CCCSSCEEEEEECSS
T ss_pred Cceeeee---eeccccccccchhhhhcccceEEEeeccc-----ceeEEECCCCcEeEEE-----eccceeEEEEEEcCC
Confidence 6533221 111111112 22332 2233777777653 4889998765421111 111112222222 3
Q ss_pred -CEEEEEecCCCCCccCeEEEEECCCCcEEEeecCCCCCCCCCcceEEEEEEeCCCcEEEEEcCCCCCCCCeEEEEEccC
Q 005043 310 -TKWYIAGGGSRKKRHAETLIFDILKGEWSVAITSPSSSVTSNKGFTLVLVQHKEKDFLVAFGGIKKEPSNQVEVLSIEK 388 (717)
Q Consensus 310 -~~IyV~GG~~~~~~~~dv~~yD~~t~~W~~l~~~p~~~~~~r~g~s~v~v~~~~~~~I~v~GG~~~~~~n~v~vyd~~~ 388 (717)
+++++.|+.++. |.+||..+.+..... . -......+.+. +.++.+++.||.++ .|.+|++..
T Consensus 281 ~~~~lasgs~D~~-----i~iwd~~~~~~~~~~--~-----H~~~V~~vafs-P~d~~~l~s~s~Dg----~v~iW~~~~ 343 (357)
T 4g56_B 281 SSPFLASISEDCT-----VAVLDADFSEVFRDL--S-----HRDFVTGVAWS-PLDHSKFTTVGWDH----KVLHHHLPS 343 (357)
T ss_dssp SSCCEEEEETTSC-----EEEECTTSCEEEEEC--C-----CSSCEEEEEEC-SSSTTEEEEEETTS----CEEEEECC-
T ss_pred CCCEEEEEeCCCE-----EEEEECCCCcEeEEC--C-----CCCCEEEEEEe-CCCCCEEEEEcCCC----eEEEEECCC
Confidence 466677776543 889999887544321 1 11122334442 22345677787654 477888754
Q ss_pred C
Q 005043 389 N 389 (717)
Q Consensus 389 ~ 389 (717)
.
T Consensus 344 ~ 344 (357)
T 4g56_B 344 E 344 (357)
T ss_dssp -
T ss_pred C
Confidence 3
No 88
>3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans}
Probab=96.40 E-value=0.55 Score=47.87 Aligned_cols=237 Identities=9% Similarity=0.027 Sum_probs=115.6
Q ss_pred CEEEEEcccCCCCCcccEEEEEcCCCce--EEccccccCCCCCCCCCCCcccceEEEEE--CCEEEEEeccCCCCCCceE
Q 005043 99 NKMIVVGGESGNGLLDDVQVLNFDRFSW--TAASSKLYLSPSSLPLKIPACRGHSLISW--GKKVLLVGGKTDSGSDRVS 174 (717)
Q Consensus 99 ~~lyV~GG~~~~~~~~~v~~yd~~t~~W--~~l~~~~~~~~~~~~~~~p~r~~hs~v~~--~~~Iyv~GG~~~~~~~~~~ 174 (717)
..+|+.+..+ +.+++||+.+... ..+... ..+ .++++.. ++.+| .+... .....
T Consensus 52 ~~l~~~~~~~-----~~i~~~d~~~~~~~~~~~~~~-----------~~~--~~~~~~s~dg~~l~-~~~~~---~~~~~ 109 (331)
T 3u4y_A 52 SNVVVTSDFC-----QTLVQIETQLEPPKVVAIQEG-----------QSS--MADVDITPDDQFAV-TVTGL---NHPFN 109 (331)
T ss_dssp CEEEEEESTT-----CEEEEEECSSSSCEEEEEEEC-----------SSC--CCCEEECTTSSEEE-ECCCS---SSSCE
T ss_pred CEEEEEeCCC-----CeEEEEECCCCceeEEecccC-----------CCC--ccceEECCCCCEEE-EecCC---CCccc
Confidence 4577776533 2789999988764 222220 111 1212222 44566 33221 11227
Q ss_pred EEEEECCCCcEEEeeecCCCCCCceeeEEEEE-CC-EEEEEccccCCCCCcCc-EEEEEcCCCc-eEeccCCCCCCCCCc
Q 005043 175 VWTFDTETECWSVVEAKGDIPVARSGHTVVRA-SS-VLILFGGEDGKRRKLND-LHMFDLKSLT-WLPLHCTGTGPSPRS 250 (717)
Q Consensus 175 v~~yD~~t~~W~~l~~~g~~P~~R~~hs~~~~-~~-~Lyv~GG~~~~~~~~~~-v~~yD~~t~~-W~~l~~~g~~P~~R~ 250 (717)
+++||+.+.+....-..+ ...+.++.. ++ .||+.+... +. +++|++.... ..... ....+....
T Consensus 110 i~v~d~~~~~~~~~~~~~-----~~~~~~~~spdg~~l~~~~~~~------~~~i~~~~~~~~g~~~~~~-~~~~~~~~~ 177 (331)
T 3u4y_A 110 MQSYSFLKNKFISTIPIP-----YDAVGIAISPNGNGLILIDRSS------ANTVRRFKIDADGVLFDTG-QEFISGGTR 177 (331)
T ss_dssp EEEEETTTTEEEEEEECC-----TTEEEEEECTTSSCEEEEEETT------TTEEEEEEECTTCCEEEEE-EEEECSSSS
T ss_pred EEEEECCCCCeEEEEECC-----CCccceEECCCCCEEEEEecCC------CceEEEEEECCCCcEeecC-CccccCCCC
Confidence 999999988765443211 122444443 33 577765421 34 6677765322 11110 001111111
Q ss_pred ccEEEEE-CCcEEEEEcCCCCCCCCCeEEEEECCCCcE----EEeecCCCCCCCCcceEEEEE-CC-EEEEEecCCCCCc
Q 005043 251 NHVAALY-DDKNLLIFGGSSKSKTLNDLYSLDFETMIW----TRIKIRGFHPSPRAGCCGVLC-GT-KWYIAGGGSRKKR 323 (717)
Q Consensus 251 ~~aa~~~-~~~~lyV~GG~~~~~~~ndv~~yd~~t~~W----~~v~~~g~~P~~R~~~sav~~-~~-~IyV~GG~~~~~~ 323 (717)
-..++.. +++.+|+.+..+ +.+.+||+.+... ..++. + .....++.. ++ .+|+.....
T Consensus 178 ~~~~~~spdg~~l~v~~~~~-----~~v~v~d~~~~~~~~~~~~~~~-~-----~~~~~~~~spdg~~l~v~~~~~---- 242 (331)
T 3u4y_A 178 PFNITFTPDGNFAFVANLIG-----NSIGILETQNPENITLLNAVGT-N-----NLPGTIVVSRDGSTVYVLTEST---- 242 (331)
T ss_dssp EEEEEECTTSSEEEEEETTT-----TEEEEEECSSTTSCEEEEEEEC-S-----SCCCCEEECTTSSEEEEECSSE----
T ss_pred ccceEECCCCCEEEEEeCCC-----CeEEEEECCCCcccceeeeccC-C-----CCCceEEECCCCCEEEEEEcCC----
Confidence 2334444 344577765432 4699999987774 22221 1 111223332 44 477665422
Q ss_pred cCeEEEEECCCCcEEEeecCCCCC---CCCCcceEEEEEEeCCCcEEEEEcCCCCCCCCeEEEEEccCCc
Q 005043 324 HAETLIFDILKGEWSVAITSPSSS---VTSNKGFTLVLVQHKEKDFLVAFGGIKKEPSNQVEVLSIEKNE 390 (717)
Q Consensus 324 ~~dv~~yD~~t~~W~~l~~~p~~~---~~~r~g~s~v~v~~~~~~~I~v~GG~~~~~~n~v~vyd~~~~e 390 (717)
+.+++||+.+.+.+.+...+... +.+......+.+. +++..||+.++. .+.+.+||+....
T Consensus 243 -~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s-pdg~~l~v~~~~----~~~v~v~d~~~~~ 306 (331)
T 3u4y_A 243 -VDVFNFNQLSGTLSFVKSFGHGLLIDPRPLFGANQMALN-KTETKLFISANI----SRELKVFTISGKV 306 (331)
T ss_dssp -EEEEEEETTTTEEEEEEEEECCCCCCCGGGTTCCCEEEC-TTSSEEEEEETT----TTEEEEEETTSCE
T ss_pred -CEEEEEECCCCceeeecccccccccCCCCcccccceEEC-CCCCEEEEecCC----CCcEEEEEecCCc
Confidence 35899999998875554322211 1111111122332 334566665543 2378999987654
No 89
>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1
Probab=96.38 E-value=0.19 Score=54.20 Aligned_cols=189 Identities=12% Similarity=0.216 Sum_probs=103.9
Q ss_pred EEEECCEEEEEeccCCCCCCceEEEEEECCCCcEEEeeecCCCCCCceeeEEEEECCEEEEEccccCCCCCcCcEEEEEc
Q 005043 152 LISWGKKVLLVGGKTDSGSDRVSVWTFDTETECWSVVEAKGDIPVARSGHTVVRASSVLILFGGEDGKRRKLNDLHMFDL 231 (717)
Q Consensus 152 ~v~~~~~Iyv~GG~~~~~~~~~~v~~yD~~t~~W~~l~~~g~~P~~R~~hs~~~~~~~Lyv~GG~~~~~~~~~~v~~yD~ 231 (717)
++..++..++.|+.+. .+.+||..+.+-...-. .....-.++..++.+++.|+.++ .+.+||+
T Consensus 138 ~~~~d~~~l~~g~~dg------~i~iwd~~~~~~~~~~~-----~h~~~v~~l~~~~~~l~sg~~dg------~i~vwd~ 200 (435)
T 1p22_A 138 CLQYDDQKIVSGLRDN------TIKIWDKNTLECKRILT-----GHTGSVLCLQYDERVIITGSSDS------TVRVWDV 200 (435)
T ss_dssp EEECCSSEEEEEESSS------CEEEEESSSCCEEEEEC-----CCSSCEEEEECCSSEEEEEETTS------CEEEEES
T ss_pred EEEECCCEEEEEeCCC------eEEEEeCCCCeEEEEEc-----CCCCcEEEEEECCCEEEEEcCCC------eEEEEEC
Confidence 4445777888887642 58889988776443321 11112233334777888887654 4888999
Q ss_pred CCCceEeccCCCCCCCCCcccEEEEECCcEEEEEcCCCCCCCCCeEEEEECCCCcEEEe-ecCCCCCCCCcceEEEEECC
Q 005043 232 KSLTWLPLHCTGTGPSPRSNHVAALYDDKNLLIFGGSSKSKTLNDLYSLDFETMIWTRI-KIRGFHPSPRAGCCGVLCGT 310 (717)
Q Consensus 232 ~t~~W~~l~~~g~~P~~R~~~aa~~~~~~~lyV~GG~~~~~~~ndv~~yd~~t~~W~~v-~~~g~~P~~R~~~sav~~~~ 310 (717)
.+.+....- ........++.+.+. +++.|+.++ .+..||+.+..-... ... ........++..++
T Consensus 201 ~~~~~~~~~-----~~h~~~v~~l~~~~~-~l~s~s~dg-----~i~vwd~~~~~~~~~~~~~---~~~~~~v~~~~~~~ 266 (435)
T 1p22_A 201 NTGEMLNTL-----IHHCEAVLHLRFNNG-MMVTCSKDR-----SIAVWDMASPTDITLRRVL---VGHRAAVNVVDFDD 266 (435)
T ss_dssp SSCCEEEEE-----CCCCSCEEEEECCTT-EEEEEETTS-----CEEEEECSSSSCCEEEEEE---CCCSSCEEEEEEET
T ss_pred CCCcEEEEE-----cCCCCcEEEEEEcCC-EEEEeeCCC-----cEEEEeCCCCCCceeeeEe---cCCCCcEEEEEeCC
Confidence 877643321 111122234445666 677777654 489999876542211 111 11122233344466
Q ss_pred EEEEEecCCCCCccCeEEEEECCCCcEEEeecCCCCCCCCCcceEEEEEEeCCCcEEEEEcCCCCCCCCeEEEEEccCCc
Q 005043 311 KWYIAGGGSRKKRHAETLIFDILKGEWSVAITSPSSSVTSNKGFTLVLVQHKEKDFLVAFGGIKKEPSNQVEVLSIEKNE 390 (717)
Q Consensus 311 ~IyV~GG~~~~~~~~dv~~yD~~t~~W~~l~~~p~~~~~~r~g~s~v~v~~~~~~~I~v~GG~~~~~~n~v~vyd~~~~e 390 (717)
..++.|+.++ .+.+||+.+..-..... . ......++.+ ++.+++.|+.++ .|.+||+.+.+
T Consensus 267 ~~l~s~~~dg-----~i~vwd~~~~~~~~~~~--~----~~~~v~~~~~----~~~~l~~g~~dg----~i~iwd~~~~~ 327 (435)
T 1p22_A 267 KYIVSASGDR-----TIKVWNTSTCEFVRTLN--G----HKRGIACLQY----RDRLVVSGSSDN----TIRLWDIECGA 327 (435)
T ss_dssp TEEEEEETTS-----EEEEEETTTCCEEEEEE--C----CSSCEEEEEE----ETTEEEEEETTS----CEEEEETTTCC
T ss_pred CEEEEEeCCC-----eEEEEECCcCcEEEEEc--C----CCCcEEEEEe----CCCEEEEEeCCC----eEEEEECCCCC
Confidence 6777777553 48899998865433221 1 1112233333 233566776543 58889987765
No 90
>1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X
Probab=96.36 E-value=0.12 Score=54.32 Aligned_cols=203 Identities=12% Similarity=0.058 Sum_probs=95.9
Q ss_pred EEEEEcccCCCCCcccEEEEEcCCCc------eEEccccccCCCCCCCCCCC--cccceEEEEE-----CCEE-EEEecc
Q 005043 100 KMIVVGGESGNGLLDDVQVLNFDRFS------WTAASSKLYLSPSSLPLKIP--ACRGHSLISW-----GKKV-LLVGGK 165 (717)
Q Consensus 100 ~lyV~GG~~~~~~~~~v~~yd~~t~~------W~~l~~~~~~~~~~~~~~~p--~r~~hs~v~~-----~~~I-yv~GG~ 165 (717)
.+++.|+.++ .+.+||+.+.. +..+... ... ...-.+++.. ++.. ++.|+.
T Consensus 82 ~~l~s~~~dg-----~i~iw~~~~~~~~~~~~~~~~~~~----------~~~~~~~~v~~~~~~~~~~~~~~~~l~~~~~ 146 (397)
T 1sq9_A 82 CLVATTSFSG-----DLLFYRITREDETKKVIFEKLDLL----------DSDMKKHSFWALKWGASNDRLLSHRLVATDV 146 (397)
T ss_dssp EEEEEEETTS-----CEEEEEEEECTTTCCEEEEEECCS----------CTTGGGSCEEEEEEECCC----CEEEEEEET
T ss_pred cEEEEEcCCC-----CEEEEEccCCcccccccceeeccc----------ccccCCCcEEEEEEeeccCCCCceEEEEEeC
Confidence 7777777653 48888887765 6665531 100 1112333333 4555 777775
Q ss_pred CCCCCCceEEEEEECCC------Cc---EE---Eeee--cCCCCCCceeeEEEEE-CCEEEEEccccCCCCCcCcEEEEE
Q 005043 166 TDSGSDRVSVWTFDTET------EC---WS---VVEA--KGDIPVARSGHTVVRA-SSVLILFGGEDGKRRKLNDLHMFD 230 (717)
Q Consensus 166 ~~~~~~~~~v~~yD~~t------~~---W~---~l~~--~g~~P~~R~~hs~~~~-~~~Lyv~GG~~~~~~~~~~v~~yD 230 (717)
+. .+.+||+.+ .. |. .+.. .........-.+++.. ++ +++.|+.+ ..+.+||
T Consensus 147 dg------~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~-~l~~~~~d------g~i~i~d 213 (397)
T 1sq9_A 147 KG------TTYIWKFHPFADESNSLTLNWSPTLELQGTVESPMTPSQFATSVDISERG-LIATGFNN------GTVQISE 213 (397)
T ss_dssp TS------CEEEEEEESSSSHHHHTTTCCCCEEEEEEEECCSSSSCCCCCEEEECTTS-EEEEECTT------SEEEEEE
T ss_pred CC------cEEEEeCCccccccccceeeccCcceeeeeeccccCCCCCceEEEECCCc-eEEEEeCC------CcEEEEE
Confidence 32 466777655 21 21 1110 0000111122233333 35 66666543 3588999
Q ss_pred cCCCceEeccCCCC--C-CCCCcccEEEEE-CCcEEEEEcCCCCCCCCCeEEEEECCCCcEEEeecCCCCCC--------
Q 005043 231 LKSLTWLPLHCTGT--G-PSPRSNHVAALY-DDKNLLIFGGSSKSKTLNDLYSLDFETMIWTRIKIRGFHPS-------- 298 (717)
Q Consensus 231 ~~t~~W~~l~~~g~--~-P~~R~~~aa~~~-~~~~lyV~GG~~~~~~~ndv~~yd~~t~~W~~v~~~g~~P~-------- 298 (717)
+.+.+....-. +. . +....-.+++.. ++. +++.|+.++ ....+.+||+.+..-...-..+..+.
T Consensus 214 ~~~~~~~~~~~-~~~~h~~~~~~i~~i~~~~~~~-~l~~~~~d~--~~g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~ 289 (397)
T 1sq9_A 214 LSTLRPLYNFE-SQHSMINNSNSIRSVKFSPQGS-LLAIAHDSN--SFGCITLYETEFGERIGSLSVPTHSSQASLGEFA 289 (397)
T ss_dssp TTTTEEEEEEE-CCC---CCCCCEEEEEECSSTT-EEEEEEEET--TEEEEEEEETTTCCEEEEECBC--------CCBS
T ss_pred CCCCceeEEEe-ccccccccCCccceEEECCCCC-EEEEEecCC--CCceEEEEECCCCcccceeccCcccccccccccc
Confidence 98765432210 00 0 001122233333 344 666666531 01359999987765332221100000
Q ss_pred CCcceEEEEE--CCEEEEEecCCCCCccCeEEEEECCCCcEEE
Q 005043 299 PRAGCCGVLC--GTKWYIAGGGSRKKRHAETLIFDILKGEWSV 339 (717)
Q Consensus 299 ~R~~~sav~~--~~~IyV~GG~~~~~~~~dv~~yD~~t~~W~~ 339 (717)
.......+.+ ++++++.|+.++ .+.+||+.+.+-..
T Consensus 290 ~~~~v~~~~~~~~~~~l~~~~~dg-----~i~iwd~~~~~~~~ 327 (397)
T 1sq9_A 290 HSSWVMSLSFNDSGETLCSAGWDG-----KLRFWDVKTKERIT 327 (397)
T ss_dssp BSSCEEEEEECSSSSEEEEEETTS-----EEEEEETTTTEEEE
T ss_pred cCCcEEEEEECCCCCEEEEEeCCC-----eEEEEEcCCCceeE
Confidence 1112222333 567777777553 58999998765433
No 91
>2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str}
Probab=96.35 E-value=0.11 Score=51.27 Aligned_cols=202 Identities=11% Similarity=0.052 Sum_probs=104.2
Q ss_pred CCEEEEEcccCCCCCcccEEEEEcCC-CceEEccccccCCCCCCCCCCCcccceEEEEECCEEEEEeccCCCCCCceEEE
Q 005043 98 GNKMIVVGGESGNGLLDDVQVLNFDR-FSWTAASSKLYLSPSSLPLKIPACRGHSLISWGKKVLLVGGKTDSGSDRVSVW 176 (717)
Q Consensus 98 ~~~lyV~GG~~~~~~~~~v~~yd~~t-~~W~~l~~~~~~~~~~~~~~~p~r~~hs~v~~~~~Iyv~GG~~~~~~~~~~v~ 176 (717)
+++.+++++. ..+++||+.+ .....+... ............-+++.+++++.... ....+|
T Consensus 52 dg~~l~~~~~------~~i~~~d~~~~~~~~~~~~~----------~~~~~~~~~~~spdg~~l~~~~~~~~--~~~~l~ 113 (297)
T 2ojh_A 52 DGKYLLLNSE------GLLYRLSLAGDPSPEKVDTG----------FATICNNDHGISPDGALYAISDKVEF--GKSAIY 113 (297)
T ss_dssp TSSEEEEEET------TEEEEEESSSCCSCEECCCT----------TCCCBCSCCEECTTSSEEEEEECTTT--SSCEEE
T ss_pred CCCEEEEEcC------CeEEEEeCCCCCCceEeccc----------cccccccceEECCCCCEEEEEEeCCC--CcceEE
Confidence 4555556542 2699999998 776665431 11111111222225555555553221 245799
Q ss_pred EEECCCCcEEEeeecCCCCCCceeeEEEEE-CC-EEEEEccccCCCCCcCcEEEEEcCCCceEeccCCCCCCCCCcccEE
Q 005043 177 TFDTETECWSVVEAKGDIPVARSGHTVVRA-SS-VLILFGGEDGKRRKLNDLHMFDLKSLTWLPLHCTGTGPSPRSNHVA 254 (717)
Q Consensus 177 ~yD~~t~~W~~l~~~g~~P~~R~~hs~~~~-~~-~Lyv~GG~~~~~~~~~~v~~yD~~t~~W~~l~~~g~~P~~R~~~aa 254 (717)
.+|..+.....+.. ... ...++.. ++ .|++.++.+.. ..+|.+|+.+.....+. ..+ .. ...+
T Consensus 114 ~~~~~~~~~~~~~~----~~~--~~~~~~spdg~~l~~~~~~~~~----~~l~~~~~~~~~~~~~~---~~~-~~-~~~~ 178 (297)
T 2ojh_A 114 LLPSTGGTPRLMTK----NLP--SYWHGWSPDGKSFTYCGIRDQV----FDIYSMDIDSGVETRLT---HGE-GR-NDGP 178 (297)
T ss_dssp EEETTCCCCEECCS----SSS--EEEEEECTTSSEEEEEEEETTE----EEEEEEETTTCCEEECC---CSS-SC-EEEE
T ss_pred EEECCCCceEEeec----CCC--ccceEECCCCCEEEEEECCCCc----eEEEEEECCCCcceEcc---cCC-Cc-cccc
Confidence 99998877655542 111 2233333 34 45545544322 36888888877776654 111 11 1223
Q ss_pred EEE-CCcEEEEEcCCCCCCCCCeEEEEECCCCcEEEeecCCCCCCCCcceEEEEE--CCEEEEEecCCCCC------ccC
Q 005043 255 ALY-DDKNLLIFGGSSKSKTLNDLYSLDFETMIWTRIKIRGFHPSPRAGCCGVLC--GTKWYIAGGGSRKK------RHA 325 (717)
Q Consensus 255 ~~~-~~~~lyV~GG~~~~~~~ndv~~yd~~t~~W~~v~~~g~~P~~R~~~sav~~--~~~IyV~GG~~~~~------~~~ 325 (717)
+.. +++.|++.+..++ ...+|.+++.+.....+... . .....+.+ +++.+++++..... ...
T Consensus 179 ~~s~dg~~l~~~~~~~~---~~~i~~~~~~~~~~~~~~~~-----~-~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~ 249 (297)
T 2ojh_A 179 DYSPDGRWIYFNSSRTG---QMQIWRVRVDGSSVERITDS-----A-YGDWFPHPSPSGDKVVFVSYDADVFDHPRDLDV 249 (297)
T ss_dssp EECTTSSEEEEEECTTS---SCEEEEEETTSSCEEECCCC-----S-EEEEEEEECTTSSEEEEEEEETTCCSCCSSEEE
T ss_pred eECCCCCEEEEEecCCC---CccEEEECCCCCCcEEEecC-----C-cccCCeEECCCCCEEEEEEcCCCCCcccccCce
Confidence 333 4454444443332 35688888877777666432 1 12222222 55555555443221 224
Q ss_pred eEEEEECCCCcEEEee
Q 005043 326 ETLIFDILKGEWSVAI 341 (717)
Q Consensus 326 dv~~yD~~t~~W~~l~ 341 (717)
.+++||+.+.+...+.
T Consensus 250 ~l~~~d~~~~~~~~~~ 265 (297)
T 2ojh_A 250 RVQLMDMDGGNVETLF 265 (297)
T ss_dssp EEEEEETTSCSCEEEE
T ss_pred EEEEEecCCCCceeee
Confidence 6899999887766554
No 92
>2ecf_A Dipeptidyl peptidase IV; prolyl oligopeptidase family, peptidase family S9, hydrolase; 2.80A {Stenotrophomonas maltophilia}
Probab=96.34 E-value=0.29 Score=56.64 Aligned_cols=149 Identities=9% Similarity=-0.001 Sum_probs=73.9
Q ss_pred cEEEEEcCC-CceEeccCCCCCCCCCcccEEEEECCcEEEEEcCCCCCCCCCeEEEEECCCCcEEEeecCCCCC-CCCcc
Q 005043 225 DLHMFDLKS-LTWLPLHCTGTGPSPRSNHVAALYDDKNLLIFGGSSKSKTLNDLYSLDFETMIWTRIKIRGFHP-SPRAG 302 (717)
Q Consensus 225 ~v~~yD~~t-~~W~~l~~~g~~P~~R~~~aa~~~~~~~lyV~GG~~~~~~~ndv~~yd~~t~~W~~v~~~g~~P-~~R~~ 302 (717)
.++++|+.+ .+-..+... .+.......++.-+++.|++ +..+......+++.+|+.++....+....... .....
T Consensus 264 ~l~~~d~~~~~~~~~~~~~--~~~~~~~~~~~~pDg~~l~~-~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~ 340 (741)
T 2ecf_A 264 KLGVISPAEQAQTQWIDLG--KEQDIYLARVNWRDPQHLSF-QRQSRDQKKLDLVEVTLASNQQRVLAHETSPTWVPLHN 340 (741)
T ss_dssp EEEEECSSTTCCCEEECCC--SCSSEEEEEEEEEETTEEEE-EEEETTSSEEEEEEEETTTCCEEEEEEEECSSCCCCCS
T ss_pred EEEEEECCCCCceEEecCC--CCcceEEEEEEeCCCCEEEE-EEecccCCeEEEEEEECCCCceEEEEEcCCCCcCCcCC
Confidence 788899988 765554311 01111112222244554443 33322223457999999998887765421100 00111
Q ss_pred eEEEEECCEEEEEecCCCCCccCeEEEEECCCCcEEEeecCCCCCCCCCcceEEE-EEEeCCCcEEEEEcCCCCCCCCeE
Q 005043 303 CCGVLCGTKWYIAGGGSRKKRHAETLIFDILKGEWSVAITSPSSSVTSNKGFTLV-LVQHKEKDFLVAFGGIKKEPSNQV 381 (717)
Q Consensus 303 ~sav~~~~~IyV~GG~~~~~~~~dv~~yD~~t~~W~~l~~~p~~~~~~r~g~s~v-~v~~~~~~~I~v~GG~~~~~~n~v 381 (717)
.-+..-++++++.++.++ ...+|.+|.... +..+.. .......+ .+. +++..|++.+..++.....+
T Consensus 341 ~~~~spdg~~~~~~~~~g---~~~l~~~~~~~~-~~~l~~-------~~~~v~~~~~~s-~dg~~l~~~~~~~~~~~~~l 408 (741)
T 2ecf_A 341 SLRFLDDGSILWSSERTG---FQHLYRIDSKGK-AAALTH-------GNWSVDELLAVD-EKAGLAYFRAGIESARESQI 408 (741)
T ss_dssp CCEECTTSCEEEEECTTS---SCEEEEECSSSC-EEESCC-------SSSCEEEEEEEE-TTTTEEEEEECSSCTTCBEE
T ss_pred ceEECCCCeEEEEecCCC---ccEEEEEcCCCC-eeeeee-------cceEEEeEeEEe-CCCCEEEEEEeCCCCceEEE
Confidence 122223667766665443 357899988766 555431 11122222 233 34456666665443334456
Q ss_pred EEEEccC
Q 005043 382 EVLSIEK 388 (717)
Q Consensus 382 ~vyd~~~ 388 (717)
|..+...
T Consensus 409 ~~~~~~g 415 (741)
T 2ecf_A 409 YAVPLQG 415 (741)
T ss_dssp EEEETTC
T ss_pred EEEEcCC
Confidence 6666533
No 93
>3g4e_A Regucalcin; six bladed beta-propeller, gluconolcatonase, organophosphate hydrolase, calcium bound, alternative splicing, cytoplasm, phosphoprotein; 1.42A {Homo sapiens} PDB: 3g4h_B
Probab=96.33 E-value=0.25 Score=50.46 Aligned_cols=236 Identities=10% Similarity=-0.042 Sum_probs=117.3
Q ss_pred cceeEEEEE--CCEEEEEcccCCCCCcccEEEEEcCCCceEEccccccCCCCCCCCCCCcccceEEEEE-CCEEEEEecc
Q 005043 89 RFNHAAAVI--GNKMIVVGGESGNGLLDDVQVLNFDRFSWTAASSKLYLSPSSLPLKIPACRGHSLISW-GKKVLLVGGK 165 (717)
Q Consensus 89 R~~haav~~--~~~lyV~GG~~~~~~~~~v~~yd~~t~~W~~l~~~~~~~~~~~~~~~p~r~~hs~v~~-~~~Iyv~GG~ 165 (717)
...-+.+.. ++.||++.... ..+++||+.+........ +.. -.+++.. ++++|+..+
T Consensus 13 ~~~Egp~w~~~~~~l~~~d~~~-----~~i~~~d~~~~~~~~~~~-------------~~~-~~~i~~~~dG~l~v~~~- 72 (297)
T 3g4e_A 13 RCGESPVWEEVSNSLLFVDIPA-----KKVCRWDSFTKQVQRVTM-------------DAP-VSSVALRQSGGYVATIG- 72 (297)
T ss_dssp SBEEEEEEETTTTEEEEEETTT-----TEEEEEETTTCCEEEEEC-------------SSC-EEEEEEBTTSSEEEEET-
T ss_pred ccccCCeEECCCCEEEEEECCC-----CEEEEEECCCCcEEEEeC-------------CCc-eEEEEECCCCCEEEEEC-
Confidence 344444544 47788886532 368999999876544332 111 1233333 556665431
Q ss_pred CCCCCCceEEEEEECCCCcEEEeeecCC-CCCCceeeEEEEECCEEEEEccccCC-----CCCcCcEEEEEcCCCceEec
Q 005043 166 TDSGSDRVSVWTFDTETECWSVVEAKGD-IPVARSGHTVVRASSVLILFGGEDGK-----RRKLNDLHMFDLKSLTWLPL 239 (717)
Q Consensus 166 ~~~~~~~~~v~~yD~~t~~W~~l~~~g~-~P~~R~~hs~~~~~~~Lyv~GG~~~~-----~~~~~~v~~yD~~t~~W~~l 239 (717)
..+++||+.+++++.+..... .+..+....++.-++.||+-.-.... ......+|+||+.. +...+
T Consensus 73 -------~~l~~~d~~~g~~~~~~~~~~~~~~~~~~di~~d~dG~l~~~~~~~~~~~~~~~~~~~~l~~~d~~g-~~~~~ 144 (297)
T 3g4e_A 73 -------TKFCALNWKEQSAVVLATVDNDKKNNRFNDGKVDPAGRYFAGTMAEETAPAVLERHQGALYSLFPDH-HVKKY 144 (297)
T ss_dssp -------TEEEEEETTTTEEEEEEECCTTCSSEEEEEEEECTTSCEEEEEEECCSBTTBCCTTCEEEEEECTTS-CEEEE
T ss_pred -------CeEEEEECCCCcEEEEEecCCCCCCCCCCCEEECCCCCEEEecCCcccccccccCCCcEEEEEECCC-CEEEE
Confidence 269999999999887754211 12222222222225677764211110 01235689998853 33332
Q ss_pred cCCCCCCCCCcccEEEEE-CCcEEEEEcCCCCCCCCCeEEEEEC--CCCcEEEeecCCCCCC-CCcceEEEEE-CCEEEE
Q 005043 240 HCTGTGPSPRSNHVAALY-DDKNLLIFGGSSKSKTLNDLYSLDF--ETMIWTRIKIRGFHPS-PRAGCCGVLC-GTKWYI 314 (717)
Q Consensus 240 ~~~g~~P~~R~~~aa~~~-~~~~lyV~GG~~~~~~~ndv~~yd~--~t~~W~~v~~~g~~P~-~R~~~sav~~-~~~IyV 314 (717)
.. .+.. -...+.. +++.+|+.... .+.|++||. .++...........+. ...-.+++.. ++.|||
T Consensus 145 ~~--~~~~---pngi~~spdg~~lyv~~~~-----~~~i~~~~~d~~~G~~~~~~~~~~~~~~~~~p~g~~~d~~G~lwv 214 (297)
T 3g4e_A 145 FD--QVDI---SNGLDWSLDHKIFYYIDSL-----SYSVDAFDYDLQTGQISNRRSVYKLEKEEQIPDGMCIDAEGKLWV 214 (297)
T ss_dssp EE--EESB---EEEEEECTTSCEEEEEEGG-----GTEEEEEEECTTTCCEEEEEEEEECCGGGCEEEEEEEBTTSCEEE
T ss_pred ee--cccc---ccceEEcCCCCEEEEecCC-----CCcEEEEeccCCCCcccCcEEEEECCCCCCCCCeeEECCCCCEEE
Confidence 21 1111 1233333 34557776543 246889986 4555432111000011 1111233332 578888
Q ss_pred EecCCCCCccCeEEEEECCCCcEEEeecCCCCCCCCCcceEEEEEEeCCCcEEEEEcCC
Q 005043 315 AGGGSRKKRHAETLIFDILKGEWSVAITSPSSSVTSNKGFTLVLVQHKEKDFLVAFGGI 373 (717)
Q Consensus 315 ~GG~~~~~~~~dv~~yD~~t~~W~~l~~~p~~~~~~r~g~s~v~v~~~~~~~I~v~GG~ 373 (717)
..... ..|++||+.+.+.......| .....++++..++.+.|||....
T Consensus 215 a~~~~-----~~v~~~d~~tG~~~~~i~~p------~~~~t~~~f~g~d~~~L~vt~~~ 262 (297)
T 3g4e_A 215 ACYNG-----GRVIRLDPVTGKRLQTVKLP------VDKTTSCCFGGKNYSEMYVTCAR 262 (297)
T ss_dssp EEETT-----TEEEEECTTTCCEEEEEECS------SSBEEEEEEESGGGCEEEEEEBC
T ss_pred EEcCC-----CEEEEEcCCCceEEEEEECC------CCCceEEEEeCCCCCEEEEEcCC
Confidence 75322 35999999876654433222 12234445542334567766554
No 94
>2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A {Staphylococcus aureus} SCOP: b.68.6.1 PDB: 2dg0_A 2dso_A
Probab=96.32 E-value=0.21 Score=51.31 Aligned_cols=251 Identities=9% Similarity=-0.002 Sum_probs=122.4
Q ss_pred CCEEEEEcccCCCCCcccEEEEEcCCCceEEccccccCCCCCCCCCCCcccceEEEEE-CCEEEEEeccCCCCCCceEEE
Q 005043 98 GNKMIVVGGESGNGLLDDVQVLNFDRFSWTAASSKLYLSPSSLPLKIPACRGHSLISW-GKKVLLVGGKTDSGSDRVSVW 176 (717)
Q Consensus 98 ~~~lyV~GG~~~~~~~~~v~~yd~~t~~W~~l~~~~~~~~~~~~~~~p~r~~hs~v~~-~~~Iyv~GG~~~~~~~~~~v~ 176 (717)
+++||+.+... ..+++||+.+..+..+... . ...-++++.. ++++|+.+.... .....++
T Consensus 55 ~g~l~~~~~~~-----~~i~~~d~~~~~~~~~~~~-----------~-~~~~~~i~~~~dg~l~v~~~~~~--~~~~~i~ 115 (333)
T 2dg1_A 55 QGQLFLLDVFE-----GNIFKINPETKEIKRPFVS-----------H-KANPAAIKIHKDGRLFVCYLGDF--KSTGGIF 115 (333)
T ss_dssp TSCEEEEETTT-----CEEEEECTTTCCEEEEEEC-----------S-SSSEEEEEECTTSCEEEEECTTS--SSCCEEE
T ss_pred CCCEEEEECCC-----CEEEEEeCCCCcEEEEeeC-----------C-CCCcceEEECCCCcEEEEeCCCC--CCCceEE
Confidence 56788877543 3689999998887765421 0 1112344443 567887654321 1124699
Q ss_pred EEECCCCcEEEeeecCCCCCCceeeEEEEE-CCEEEEEccccCCCCCcCcEEEEEcCCCceEeccCCCCCCCCCcccEEE
Q 005043 177 TFDTETECWSVVEAKGDIPVARSGHTVVRA-SSVLILFGGEDGKRRKLNDLHMFDLKSLTWLPLHCTGTGPSPRSNHVAA 255 (717)
Q Consensus 177 ~yD~~t~~W~~l~~~g~~P~~R~~hs~~~~-~~~Lyv~GG~~~~~~~~~~v~~yD~~t~~W~~l~~~g~~P~~R~~~aa~ 255 (717)
+||+.+.....+.. .......-..++.. ++.+|+.............+++||+.+.+...+.. ... .....+
T Consensus 116 ~~d~~~~~~~~~~~--~~~~~~~~~~i~~d~~g~l~v~~~~~~~~~~~~~l~~~~~~~~~~~~~~~--~~~---~~~~i~ 188 (333)
T 2dg1_A 116 AATENGDNLQDIIE--DLSTAYCIDDMVFDSKGGFYFTDFRGYSTNPLGGVYYVSPDFRTVTPIIQ--NIS---VANGIA 188 (333)
T ss_dssp EECTTSCSCEEEEC--SSSSCCCEEEEEECTTSCEEEEECCCBTTBCCEEEEEECTTSCCEEEEEE--EES---SEEEEE
T ss_pred EEeCCCCEEEEEEc--cCccCCcccceEECCCCCEEEEeccccccCCCceEEEEeCCCCEEEEeec--CCC---cccceE
Confidence 99999887653321 11111222233333 56788764321111123579999998777665431 111 112233
Q ss_pred EEC-CcEEEEEcCCCCCCCCCeEEEEECCC--CcEEEeecC--CCCCCCCcceEEEEE-CCEEEEEecCCCCCccCeEEE
Q 005043 256 LYD-DKNLLIFGGSSKSKTLNDLYSLDFET--MIWTRIKIR--GFHPSPRAGCCGVLC-GTKWYIAGGGSRKKRHAETLI 329 (717)
Q Consensus 256 ~~~-~~~lyV~GG~~~~~~~ndv~~yd~~t--~~W~~v~~~--g~~P~~R~~~sav~~-~~~IyV~GG~~~~~~~~dv~~ 329 (717)
... ++.+|+.... .+.+++||+.+ .....+... ...+....-.+++.. ++.+||..... ..+++
T Consensus 189 ~~~dg~~l~v~~~~-----~~~i~~~d~~~~g~~~~~~~~~~~~~~~~~~~~~~i~~d~~G~l~v~~~~~-----~~v~~ 258 (333)
T 2dg1_A 189 LSTDEKVLWVTETT-----ANRLHRIALEDDGVTIQPFGATIPYYFTGHEGPDSCCIDSDDNLYVAMYGQ-----GRVLV 258 (333)
T ss_dssp ECTTSSEEEEEEGG-----GTEEEEEEECTTSSSEEEEEEEEEEECCSSSEEEEEEEBTTCCEEEEEETT-----TEEEE
T ss_pred ECCCCCEEEEEeCC-----CCeEEEEEecCCCcCcccccceEEEecCCCCCCCceEECCCCCEEEEEcCC-----CEEEE
Confidence 333 3457776432 24699999853 234322100 000111111223332 57788876322 35899
Q ss_pred EECCCCcEEEeecCCCCCCCCC-cceEEEEEEeCCCcEEEEEcCCCCCC-CCeEEEEEcc
Q 005043 330 FDILKGEWSVAITSPSSSVTSN-KGFTLVLVQHKEKDFLVAFGGIKKEP-SNQVEVLSIE 387 (717)
Q Consensus 330 yD~~t~~W~~l~~~p~~~~~~r-~g~s~v~v~~~~~~~I~v~GG~~~~~-~n~v~vyd~~ 387 (717)
||+....-..+.. +.. .... .....+.+. .++..||+.+..+..+ ...++.+++.
T Consensus 259 ~d~~g~~~~~~~~-~~~-~~g~~~~~~~~~~~-~dg~~L~v~~~~g~~~~~~~l~~~~~~ 315 (333)
T 2dg1_A 259 FNKRGYPIGQILI-PGR-DEGHMLRSTHPQFI-PGTNQLIICSNDIEMGGGSMLYTVNGF 315 (333)
T ss_dssp ECTTSCEEEEEEC-TTG-GGTCSCBCCEEEEC-TTSCEEEEEEECGGGTCCEEEEEEECS
T ss_pred ECCCCCEEEEEEc-CCC-ccccccCcceEEEC-CCCCEEEEEeCccCCCCCceEEEEecc
Confidence 9996554444431 110 0000 012233332 3345677654433211 3356666654
No 95
>2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii}
Probab=96.31 E-value=0.94 Score=45.08 Aligned_cols=188 Identities=8% Similarity=-0.022 Sum_probs=102.0
Q ss_pred CCEEEEEcccCCCCCcccEEEEEcCCCceEEccccccCCCCCCCCCCCcccceEEEEE-CCEEEEEeccCCCCCCceEEE
Q 005043 98 GNKMIVVGGESGNGLLDDVQVLNFDRFSWTAASSKLYLSPSSLPLKIPACRGHSLISW-GKKVLLVGGKTDSGSDRVSVW 176 (717)
Q Consensus 98 ~~~lyV~GG~~~~~~~~~v~~yd~~t~~W~~l~~~~~~~~~~~~~~~p~r~~hs~v~~-~~~Iyv~GG~~~~~~~~~~v~ 176 (717)
++.+|+..... ..+++||+. ..+..... +.....-++++.. ++.+|+.... ...++
T Consensus 72 ~g~l~v~~~~~-----~~v~~~d~~-g~~~~~~~-----------~~~~~~~~~i~~~~~g~l~v~~~~------~~~i~ 128 (300)
T 2qc5_A 72 LGDIWFTENGA-----NKIGKLSKK-GGFTEYPL-----------PQPDSGPYGITEGLNGDIWFTQLN------GDRIG 128 (300)
T ss_dssp TSCEEEEETTT-----TEEEEECTT-SCEEEEEC-----------SSTTCCEEEEEECSTTCEEEEETT------TTEEE
T ss_pred CCCEEEEecCC-----CeEEEECCC-CCeEEecC-----------CCCCCCCccceECCCCCEEEEccC------CCeEE
Confidence 46788865322 358999988 66654432 1111223444444 5778877532 12689
Q ss_pred EEECCCCcEEEeeecCCCC-CCceeeEEEEE-CCEEEEEccccCCCCCcCcEEEEEcCCCceEeccCCCCCCCCCccc-E
Q 005043 177 TFDTETECWSVVEAKGDIP-VARSGHTVVRA-SSVLILFGGEDGKRRKLNDLHMFDLKSLTWLPLHCTGTGPSPRSNH-V 253 (717)
Q Consensus 177 ~yD~~t~~W~~l~~~g~~P-~~R~~hs~~~~-~~~Lyv~GG~~~~~~~~~~v~~yD~~t~~W~~l~~~g~~P~~R~~~-a 253 (717)
+||+. ++...... + .....+.++.. ++.||+... ....+++||+ +.++..... |...... .
T Consensus 129 ~~~~~-g~~~~~~~----~~~~~~~~~i~~d~~g~l~v~~~------~~~~i~~~~~-~g~~~~~~~----~~~~~~~~~ 192 (300)
T 2qc5_A 129 KLTAD-GTIYEYDL----PNKGSYPAFITLGSDNALWFTEN------QNNSIGRITN-TGKLEEYPL----PTNAAAPVG 192 (300)
T ss_dssp EECTT-SCEEEEEC----SSTTCCEEEEEECTTSSEEEEET------TTTEEEEECT-TCCEEEEEC----SSTTCCEEE
T ss_pred EECCC-CCEEEccC----CCCCCCceeEEECCCCCEEEEec------CCCeEEEECC-CCcEEEeeC----CCCCCCcce
Confidence 99988 66655432 2 11223344443 467888642 1246899999 666665531 2111122 3
Q ss_pred EEEECCcEEEEEcCCCCCCCCCeEEEEECCCCcEEEeecCCCCCCCCcc-eEEEEE-CCEEEEEecCCCCCccCeEEEEE
Q 005043 254 AALYDDKNLLIFGGSSKSKTLNDLYSLDFETMIWTRIKIRGFHPSPRAG-CCGVLC-GTKWYIAGGGSRKKRHAETLIFD 331 (717)
Q Consensus 254 a~~~~~~~lyV~GG~~~~~~~ndv~~yd~~t~~W~~v~~~g~~P~~R~~-~sav~~-~~~IyV~GG~~~~~~~~dv~~yD 331 (717)
++...+..+|+.... .+.+++||+ ++.+...... ..... .+++.. ++.|||..... +.+.+||
T Consensus 193 i~~d~~g~l~v~~~~-----~~~i~~~~~-~g~~~~~~~~----~~~~~~~~i~~d~~g~l~v~~~~~-----~~i~~~~ 257 (300)
T 2qc5_A 193 ITSGNDGALWFVEIM-----GNKIGRITT-TGEISEYDIP----TPNARPHAITAGKNSEIWFTEWGA-----NQIGRIT 257 (300)
T ss_dssp EEECTTSSEEEEETT-----TTEEEEECT-TCCEEEEECS----STTCCEEEEEECSTTCEEEEETTT-----TEEEEEC
T ss_pred EEECCCCCEEEEccC-----CCEEEEEcC-CCcEEEEECC----CCCCCceEEEECCCCCEEEeccCC-----CeEEEEC
Confidence 333333347776432 235999998 6666665321 11122 233332 56788876322 4588999
Q ss_pred CCCCcEEEe
Q 005043 332 ILKGEWSVA 340 (717)
Q Consensus 332 ~~t~~W~~l 340 (717)
+ +......
T Consensus 258 ~-~g~~~~~ 265 (300)
T 2qc5_A 258 N-DNTIQEY 265 (300)
T ss_dssp T-TSCEEEE
T ss_pred C-CCcEEEE
Confidence 8 4566554
No 96
>2z3z_A Dipeptidyl aminopeptidase IV; peptidase family S9, prolyl oligopeptidase family, serine PR proline-specific peptidase, hydrolase; HET: AIO; 1.95A {Porphyromonas gingivalis} PDB: 2z3w_A* 2d5l_A 2eep_A* 2dcm_A*
Probab=96.29 E-value=1.3 Score=50.74 Aligned_cols=153 Identities=8% Similarity=-0.007 Sum_probs=81.2
Q ss_pred cCcEEEEEcCCCceEeccCCCCCCCCCcccEEEEE-CCcEEEEEcCCCCCCCCCeEEEEECCCC-cEEEeecCCCCCCCC
Q 005043 223 LNDLHMFDLKSLTWLPLHCTGTGPSPRSNHVAALY-DDKNLLIFGGSSKSKTLNDLYSLDFETM-IWTRIKIRGFHPSPR 300 (717)
Q Consensus 223 ~~~v~~yD~~t~~W~~l~~~g~~P~~R~~~aa~~~-~~~~lyV~GG~~~~~~~ndv~~yd~~t~-~W~~v~~~g~~P~~R 300 (717)
...+++||+.+.+...+.. ..+.......++.. +++ .++++..+.......++.+|+.++ .+..+..... +...
T Consensus 234 ~~~l~~~d~~~~~~~~~~~--~~~~~~~~~~~~~spdg~-~l~~~~~~~~~~~~~v~~~d~~~g~~~~~~~~~~~-~~~~ 309 (706)
T 2z3z_A 234 HVTVGIYHLATGKTVYLQT--GEPKEKFLTNLSWSPDEN-ILYVAEVNRAQNECKVNAYDAETGRFVRTLFVETD-KHYV 309 (706)
T ss_dssp EEEEEEEETTTTEEEECCC--CSCTTCEEEEEEECTTSS-EEEEEEECTTSCEEEEEEEETTTCCEEEEEEEEEC-SSCC
T ss_pred eeEEEEEECCCCceEeecc--CCCCceeEeeEEEECCCC-EEEEEEeCCCCCeeEEEEEECCCCceeeEEEEccC-CCeE
Confidence 3569999998887665531 11111222223333 445 444444433333457999999998 7776643211 1100
Q ss_pred --cceEEEEE--CCEEEEEecCCCCCccCeEEEEECCCCcEEEeecCCCCCCCCCcceEE-EEEEeCCCcEEEEEcCCCC
Q 005043 301 --AGCCGVLC--GTKWYIAGGGSRKKRHAETLIFDILKGEWSVAITSPSSSVTSNKGFTL-VLVQHKEKDFLVAFGGIKK 375 (717)
Q Consensus 301 --~~~sav~~--~~~IyV~GG~~~~~~~~dv~~yD~~t~~W~~l~~~p~~~~~~r~g~s~-v~v~~~~~~~I~v~GG~~~ 375 (717)
.......- ++++++.+..++ ...+|.+|........+.. ....... +.+. +++..|++.+..++
T Consensus 310 ~~~~~~~~sp~~dg~~l~~~~~~g---~~~l~~~~~~~~~~~~l~~-------~~~~v~~~~~~s-pdg~~l~~~~~~~~ 378 (706)
T 2z3z_A 310 EPLHPLTFLPGSNNQFIWQSRRDG---WNHLYLYDTTGRLIRQVTK-------GEWEVTNFAGFD-PKGTRLYFESTEAS 378 (706)
T ss_dssp CCCSCCEECTTCSSEEEEEECTTS---SCEEEEEETTSCEEEECCC-------SSSCEEEEEEEC-TTSSEEEEEESSSC
T ss_pred CccCCceeecCCCCEEEEEEccCC---ccEEEEEECCCCEEEecCC-------CCeEEEeeeEEc-CCCCEEEEEecCCC
Confidence 11112223 677666665442 3678999987777776641 1111222 3332 34456666655443
Q ss_pred CCCCeEEEEEccCCc
Q 005043 376 EPSNQVEVLSIEKNE 390 (717)
Q Consensus 376 ~~~n~v~vyd~~~~e 390 (717)
.....+|.+|..+.+
T Consensus 379 ~~~~~l~~~d~~~~~ 393 (706)
T 2z3z_A 379 PLERHFYCIDIKGGK 393 (706)
T ss_dssp TTCBEEEEEETTCCC
T ss_pred CceEEEEEEEcCCCC
Confidence 334588999887765
No 97
>3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae}
Probab=96.28 E-value=0.55 Score=46.96 Aligned_cols=189 Identities=15% Similarity=0.110 Sum_probs=93.0
Q ss_pred ECCEEEEEeccCCCCCCceEEEEEECCCCcEEEeeecCCCCCCceeeEEEEECCEEEEEccccCCCCCcCcEEEEEcCCC
Q 005043 155 WGKKVLLVGGKTDSGSDRVSVWTFDTETECWSVVEAKGDIPVARSGHTVVRASSVLILFGGEDGKRRKLNDLHMFDLKSL 234 (717)
Q Consensus 155 ~~~~Iyv~GG~~~~~~~~~~v~~yD~~t~~W~~l~~~g~~P~~R~~hs~~~~~~~Lyv~GG~~~~~~~~~~v~~yD~~t~ 234 (717)
+++..++.|+.+ ..+.+||.....+.... ...+.........++..++.|+.++ .+..||....
T Consensus 112 ~~~~~l~~~~~d------~~i~~~d~~~~~~~~~~----~~~~v~~~~~~~~~~~~l~~~~~d~------~i~i~d~~~~ 175 (313)
T 3odt_A 112 FQDGVVISGSWD------KTAKVWKEGSLVYNLQA----HNASVWDAKVVSFSENKFLTASADK------TIKLWQNDKV 175 (313)
T ss_dssp EETTEEEEEETT------SEEEEEETTEEEEEEEC----CSSCEEEEEEEETTTTEEEEEETTS------CEEEEETTEE
T ss_pred ecCCEEEEEeCC------CCEEEEcCCcEEEeccc----CCCceeEEEEccCCCCEEEEEECCC------CEEEEecCce
Confidence 355566777653 25788883322222211 1111111111222566777776543 4778884322
Q ss_pred ceEeccCCCCCCCCCcccEEEEECCcEEEEEcCCCCCCCCCeEEEEECCCCcEEEeecCCCCCCCCcceEEEEE-CCEEE
Q 005043 235 TWLPLHCTGTGPSPRSNHVAALYDDKNLLIFGGSSKSKTLNDLYSLDFETMIWTRIKIRGFHPSPRAGCCGVLC-GTKWY 313 (717)
Q Consensus 235 ~W~~l~~~g~~P~~R~~~aa~~~~~~~lyV~GG~~~~~~~ndv~~yd~~t~~W~~v~~~g~~P~~R~~~sav~~-~~~Iy 313 (717)
. ..+. .+....-.+++...+.. ++.|+.++ .+..||+.+..-...-.. ....-.+++.. ++ .+
T Consensus 176 ~-~~~~----~~~~~~i~~~~~~~~~~-~~~~~~dg-----~i~i~d~~~~~~~~~~~~----~~~~i~~~~~~~~~-~l 239 (313)
T 3odt_A 176 I-KTFS----GIHNDVVRHLAVVDDGH-FISCSNDG-----LIKLVDMHTGDVLRTYEG----HESFVYCIKLLPNG-DI 239 (313)
T ss_dssp E-EEEC----SSCSSCEEEEEEEETTE-EEEEETTS-----EEEEEETTTCCEEEEEEC----CSSCEEEEEECTTS-CE
T ss_pred E-EEEe----ccCcccEEEEEEcCCCe-EEEccCCC-----eEEEEECCchhhhhhhhc----CCceEEEEEEecCC-CE
Confidence 1 1121 11222233444455554 66666543 599999987653322211 11112233333 44 45
Q ss_pred EEecCCCCCccCeEEEEECCCCcEEEeecCCCCCCCCCcceEEEEEEeCCCcEEEEEcCCCCCCCCeEEEEEccCCcccC
Q 005043 314 IAGGGSRKKRHAETLIFDILKGEWSVAITSPSSSVTSNKGFTLVLVQHKEKDFLVAFGGIKKEPSNQVEVLSIEKNESSM 393 (717)
Q Consensus 314 V~GG~~~~~~~~dv~~yD~~t~~W~~l~~~p~~~~~~r~g~s~v~v~~~~~~~I~v~GG~~~~~~n~v~vyd~~~~eW~~ 393 (717)
+.|+.+ ..+.+||+.+.+.......+ ......+.+.. ++. ++.|+.++ .+.+||+.+.++..
T Consensus 240 ~~~~~d-----g~v~iwd~~~~~~~~~~~~~------~~~i~~~~~~~--~~~-~~~~~~dg----~i~iw~~~~~~~~~ 301 (313)
T 3odt_A 240 VSCGED-----RTVRIWSKENGSLKQVITLP------AISIWSVDCMS--NGD-IIVGSSDN----LVRIFSQEKSRWAS 301 (313)
T ss_dssp EEEETT-----SEEEEECTTTCCEEEEEECS------SSCEEEEEECT--TSC-EEEEETTS----CEEEEESCGGGCCC
T ss_pred EEEecC-----CEEEEEECCCCceeEEEecc------CceEEEEEEcc--CCC-EEEEeCCC----cEEEEeCCCCceee
Confidence 666654 35899999887655443211 11223333332 333 44566543 68999998887543
No 98
>2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A
Probab=96.26 E-value=0.75 Score=46.83 Aligned_cols=232 Identities=9% Similarity=0.038 Sum_probs=113.2
Q ss_pred CCEEEEEcccCCCCCcccEEEEEcCCCceEEccccccCCCCCCCCCCCcccceEEE-EECCEEEEEeccCCCCCCceEEE
Q 005043 98 GNKMIVVGGESGNGLLDDVQVLNFDRFSWTAASSKLYLSPSSLPLKIPACRGHSLI-SWGKKVLLVGGKTDSGSDRVSVW 176 (717)
Q Consensus 98 ~~~lyV~GG~~~~~~~~~v~~yd~~t~~W~~l~~~~~~~~~~~~~~~p~r~~hs~v-~~~~~Iyv~GG~~~~~~~~~~v~ 176 (717)
++.+++.|+.++ .+.+||+.+..-...-. .....-.++. ..++.+++.|+.+ ..+.
T Consensus 24 ~~~~l~s~~~dg-----~v~lWd~~~~~~~~~~~------------~~~~~v~~~~~~~~~~~l~s~s~d------~~i~ 80 (304)
T 2ynn_A 24 TEPWVLTTLYSG-----RVELWNYETQVEVRSIQ------------VTETPVRAGKFIARKNWIIVGSDD------FRIR 80 (304)
T ss_dssp SSSEEEEEETTS-----EEEEEETTTTEEEEEEE------------CCSSCEEEEEEEGGGTEEEEEETT------SEEE
T ss_pred CCCEEEEEcCCC-----cEEEEECCCCceeEEee------------ccCCcEEEEEEeCCCCEEEEECCC------CEEE
Confidence 455667777553 58888988764322211 0011111222 2256667777753 2688
Q ss_pred EEECCCCcEEEeeecCCCCCCceeeEEEEE-CCEEEEEccccCCCCCcCcEEEEEcCCCceEeccCCCCCCCCCcccEEE
Q 005043 177 TFDTETECWSVVEAKGDIPVARSGHTVVRA-SSVLILFGGEDGKRRKLNDLHMFDLKSLTWLPLHCTGTGPSPRSNHVAA 255 (717)
Q Consensus 177 ~yD~~t~~W~~l~~~g~~P~~R~~hs~~~~-~~~Lyv~GG~~~~~~~~~~v~~yD~~t~~W~~l~~~g~~P~~R~~~aa~ 255 (717)
+||+.++.-...-. .....-.+++.. ++.+++.|+.++ .+.+||+.+.. ..... .......-.+++
T Consensus 81 vwd~~~~~~~~~~~----~h~~~v~~~~~~~~~~~l~sgs~D~------~v~lWd~~~~~-~~~~~--~~~h~~~v~~v~ 147 (304)
T 2ynn_A 81 VFNYNTGEKVVDFE----AHPDYIRSIAVHPTKPYVLSGSDDL------TVKLWNWENNW-ALEQT--FEGHEHFVMCVA 147 (304)
T ss_dssp EEETTTCCEEEEEE----CCSSCEEEEEECSSSSEEEEEETTS------CEEEEEGGGTT-EEEEE--ECCCCSCEEEEE
T ss_pred EEECCCCcEEEEEe----CCCCcEEEEEEcCCCCEEEEECCCC------eEEEEECCCCc-chhhh--hcccCCcEEEEE
Confidence 89988775322111 111112233333 456677777553 37788886542 11110 001111122333
Q ss_pred EEC-CcEEEEEcCCCCCCCCCeEEEEECCCCcEEEeecCCCCCCCCcceEEEEE---CCEEEEEecCCCCCccCeEEEEE
Q 005043 256 LYD-DKNLLIFGGSSKSKTLNDLYSLDFETMIWTRIKIRGFHPSPRAGCCGVLC---GTKWYIAGGGSRKKRHAETLIFD 331 (717)
Q Consensus 256 ~~~-~~~lyV~GG~~~~~~~ndv~~yd~~t~~W~~v~~~g~~P~~R~~~sav~~---~~~IyV~GG~~~~~~~~dv~~yD 331 (717)
... +..+++.|+.++ .|..||+.+..-...... ...+........ ++.+++.|+.++ .+.+||
T Consensus 148 ~~p~~~~~l~sgs~D~-----~v~iwd~~~~~~~~~~~~---~~~~~v~~~~~~~~~~~~~l~s~s~D~-----~i~iWd 214 (304)
T 2ynn_A 148 FNPKDPSTFASGCLDR-----TVKVWSLGQSTPNFTLTT---GQERGVNYVDYYPLPDKPYMITASDDL-----TIKIWD 214 (304)
T ss_dssp ECTTCTTEEEEEETTS-----EEEEEETTCSSCSEEEEC---CCTTCEEEEEECCSTTCCEEEEEETTS-----EEEEEE
T ss_pred ECCCCCCEEEEEeCCC-----eEEEEECCCCCccceecc---CCcCcEEEEEEEEcCCCCEEEEEcCCC-----eEEEEe
Confidence 332 333777787754 588999865431111111 111111122221 456777777553 488999
Q ss_pred CCCCcEEEeecCCCCCCCCCcceEEEEEEeCCCcEEEEEcCCCCCCCCeEEEEEccCCc
Q 005043 332 ILKGEWSVAITSPSSSVTSNKGFTLVLVQHKEKDFLVAFGGIKKEPSNQVEVLSIEKNE 390 (717)
Q Consensus 332 ~~t~~W~~l~~~p~~~~~~r~g~s~v~v~~~~~~~I~v~GG~~~~~~n~v~vyd~~~~e 390 (717)
+.+..-.... ... ......+.+.. +..+++.|+.++ .|.+||+.+.+
T Consensus 215 ~~~~~~~~~~--~~h----~~~v~~~~~~p--~~~~l~s~s~Dg----~i~iWd~~~~~ 261 (304)
T 2ynn_A 215 YQTKSCVATL--EGH----MSNVSFAVFHP--TLPIIISGSEDG----TLKIWNSSTYK 261 (304)
T ss_dssp TTTTEEEEEE--ECC----SSCEEEEEECS--SSSEEEEEETTS----CEEEEETTTCC
T ss_pred CCCCccceee--CCC----CCCEEEEEECC--CCCEEEEEcCCC----eEEEEECCCCc
Confidence 9876533322 111 11223333332 334667777654 47888887655
No 99
>3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A
Probab=96.26 E-value=1 Score=46.66 Aligned_cols=251 Identities=14% Similarity=0.128 Sum_probs=111.1
Q ss_pred EEEEcccCCCC-CcccEEEEEcCCCceEEccccccCCCCCCCCCCCcccceEEEEE-CCEEEEEeccCCCCCCceEEEEE
Q 005043 101 MIVVGGESGNG-LLDDVQVLNFDRFSWTAASSKLYLSPSSLPLKIPACRGHSLISW-GKKVLLVGGKTDSGSDRVSVWTF 178 (717)
Q Consensus 101 lyV~GG~~~~~-~~~~v~~yd~~t~~W~~l~~~~~~~~~~~~~~~p~r~~hs~v~~-~~~Iyv~GG~~~~~~~~~~v~~y 178 (717)
.+++|.+.... ..-.+|.+|+.+.++..+... . ...| .+.+..- +..||+.+... .....-.+|.+
T Consensus 15 ~~~vg~y~~~~~~~i~~~~~d~~~g~~~~~~~~-~-------~~~p---~~l~~spdg~~l~~~~~~~-~~~~~v~~~~~ 82 (361)
T 3scy_A 15 TMLVGTYTSGNSKGIYTFRFNEETGESLPLSDA-E-------VANP---SYLIPSADGKFVYSVNEFS-KDQAAVSAFAF 82 (361)
T ss_dssp EEEEEECCSSSCCEEEEEEEETTTCCEEEEEEE-E-------CSCC---CSEEECTTSSEEEEEECCS-STTCEEEEEEE
T ss_pred EEEEEeccCCCCCCEEEEEEeCCCCCEEEeecc-c-------CCCC---ceEEECCCCCEEEEEEccC-CCCCcEEEEEE
Confidence 44566654322 112355567778887776542 0 0011 1112222 34566665431 11223345777
Q ss_pred ECCCCcEEEeeecCCCCCCceeeEEEEECCEEEEEccccCCCCCcCcEEEEEcCCCc-eEec----cCCCCCCCC-----
Q 005043 179 DTETECWSVVEAKGDIPVARSGHTVVRASSVLILFGGEDGKRRKLNDLHMFDLKSLT-WLPL----HCTGTGPSP----- 248 (717)
Q Consensus 179 D~~t~~W~~l~~~g~~P~~R~~hs~~~~~~~Lyv~GG~~~~~~~~~~v~~yD~~t~~-W~~l----~~~g~~P~~----- 248 (717)
|..++..+.+.... ......+.++..++.||+.+. . -..+.+|++.+.. ...+ ...+..|.+
T Consensus 83 ~~~~g~~~~~~~~~--~~~~~p~~~~~dg~~l~~~~~-~-----~~~v~~~~~~~~g~~~~~~~~~~~~g~~~~~~~~~~ 154 (361)
T 3scy_A 83 DKEKGTLHLLNTQK--TMGADPCYLTTNGKNIVTANY-S-----GGSITVFPIGQDGALLPASDVIEFKGSGPDKERQTM 154 (361)
T ss_dssp ETTTTEEEEEEEEE--CSSSCEEEEEECSSEEEEEET-T-----TTEEEEEEBCTTSCBCSCSEEEECCCCCSCTTTCSS
T ss_pred eCCCCcEEEeeEec--cCCCCcEEEEECCCEEEEEEC-C-----CCEEEEEEeCCCCcCcccceeEEccCCCCCccccCC
Confidence 77777777665311 011122233333345666542 1 2457888886432 1111 111111211
Q ss_pred CcccEEEEEC-CcEEEEEcCCCCCCCCCeEEEEECCCCc-------EEEe---ecCCCCCCCCcceEEEEE-CC-EEEEE
Q 005043 249 RSNHVAALYD-DKNLLIFGGSSKSKTLNDLYSLDFETMI-------WTRI---KIRGFHPSPRAGCCGVLC-GT-KWYIA 315 (717)
Q Consensus 249 R~~~aa~~~~-~~~lyV~GG~~~~~~~ndv~~yd~~t~~-------W~~v---~~~g~~P~~R~~~sav~~-~~-~IyV~ 315 (717)
...|.++... ++.+|+.+.. .+.+++|++.... .... ... ..+....-..++.. ++ .+|+.
T Consensus 155 ~~~~~~~~spdg~~l~~~~~~-----~~~v~v~~~~~~~~~~~~~~l~~~~~~~~~-~~~~~~~~~~~~~spdg~~l~v~ 228 (361)
T 3scy_A 155 PHLHCVRITPDGKYLLADDLG-----TDQIHKFNINPNANADNKEKFLTKGTPEAF-KVAPGSGPRHLIFNSDGKFAYLI 228 (361)
T ss_dssp CCEEEEEECTTSSEEEEEETT-----TTEEEEEEECTTCCTTTCCCCEEEEEEEEE-ECCTTCCEEEEEECTTSSEEEEE
T ss_pred CcceEEEECCCCCEEEEEeCC-----CCEEEEEEEcCCCCcccccceeecccccce-ecCCCCCCeEEEEcCCCCEEEEE
Confidence 1123444443 4456665432 2457888766443 2111 000 00111111223332 44 57776
Q ss_pred ecCCCCCccCeEEEEECCCCcEEEeecCCCCCCCCCcceEEEEEEeCCCcEEEEEcCCCCCCCCeEEEEEcc
Q 005043 316 GGGSRKKRHAETLIFDILKGEWSVAITSPSSSVTSNKGFTLVLVQHKEKDFLVAFGGIKKEPSNQVEVLSIE 387 (717)
Q Consensus 316 GG~~~~~~~~dv~~yD~~t~~W~~l~~~p~~~~~~r~g~s~v~v~~~~~~~I~v~GG~~~~~~n~v~vyd~~ 387 (717)
+..+ +.+.+||+.+..+..+...+.. +....+...+.+. +++.+||+.+... .+.+.+|++.
T Consensus 229 ~~~~-----~~v~v~~~~~g~~~~~~~~~~~-~~~~~~~~~i~~s-pdg~~l~v~~~~~---~~~i~v~~~~ 290 (361)
T 3scy_A 229 NEIG-----GTVIAFRYADGMLDEIQTVAAD-TVNAQGSGDIHLS-PDGKYLYASNRLK---ADGVAIFKVD 290 (361)
T ss_dssp ETTT-----CEEEEEEEETTEEEEEEEEESC-SSCCCCEEEEEEC-TTSSEEEEEECSS---SCEEEEEEEC
T ss_pred cCCC-----CeEEEEEecCCceEEeEEEecC-CCCCCCcccEEEC-CCCCEEEEECCCC---CCEEEEEEEc
Confidence 6332 3588999888877655432211 1112223344443 3345566544320 2367777775
No 100
>4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B*
Probab=96.25 E-value=0.067 Score=57.96 Aligned_cols=193 Identities=11% Similarity=0.046 Sum_probs=97.1
Q ss_pred CCEEEEEcccCCCCCcccEEEEEcCCCceEEccccccCCCCCCCCCCCcccceEEEEE--CCEEEEEeccCCCCCCceEE
Q 005043 98 GNKMIVVGGESGNGLLDDVQVLNFDRFSWTAASSKLYLSPSSLPLKIPACRGHSLISW--GKKVLLVGGKTDSGSDRVSV 175 (717)
Q Consensus 98 ~~~lyV~GG~~~~~~~~~v~~yd~~t~~W~~l~~~~~~~~~~~~~~~p~r~~hs~v~~--~~~Iyv~GG~~~~~~~~~~v 175 (717)
++.+++.|+.++ .+.+||+.+......... ......-.+++.. ++.+++.||.+. .|
T Consensus 131 ~~~~lasGs~dg-----~i~lWd~~~~~~~~~~~~----------~gH~~~V~~l~f~p~~~~~l~s~s~D~------~v 189 (435)
T 4e54_B 131 HPSTVAVGSKGG-----DIMLWNFGIKDKPTFIKG----------IGAGGSITGLKFNPLNTNQFYASSMEG------TT 189 (435)
T ss_dssp CTTCEEEEETTS-----CEEEECSSCCSCCEEECC----------CSSSCCCCEEEECSSCTTEEEEECSSS------CE
T ss_pred CCCEEEEEeCCC-----EEEEEECCCCCceeEEEc----------cCCCCCEEEEEEeCCCCCEEEEEeCCC------EE
Confidence 456888888664 488899877654332221 0111111233332 456777777642 47
Q ss_pred EEEECCCCcEEEeeecCCCCCCceeeEEEE-ECCEEEEEccccCCCCCcCcEEEEEcCCCceEeccCCCCCCCCCcccEE
Q 005043 176 WTFDTETECWSVVEAKGDIPVARSGHTVVR-ASSVLILFGGEDGKRRKLNDLHMFDLKSLTWLPLHCTGTGPSPRSNHVA 254 (717)
Q Consensus 176 ~~yD~~t~~W~~l~~~g~~P~~R~~hs~~~-~~~~Lyv~GG~~~~~~~~~~v~~yD~~t~~W~~l~~~g~~P~~R~~~aa 254 (717)
.+||+.++....+...... .....++.. -++.+++.|+.++ .+.+||+....-..+. . . ...-.++
T Consensus 190 ~iwd~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~l~~g~~dg------~i~~wd~~~~~~~~~~---~-h-~~~v~~v 256 (435)
T 4e54_B 190 RLQDFKGNILRVFASSDTI--NIWFCSLDVSASSRMVVTGDNVG------NVILLNMDGKELWNLR---M-H-KKKVTHV 256 (435)
T ss_dssp EEEETTSCEEEEEECCSSC--SCCCCCEEEETTTTEEEEECSSS------BEEEEESSSCBCCCSB---C-C-SSCEEEE
T ss_pred EEeeccCCceeEEeccCCC--CccEEEEEECCCCCEEEEEeCCC------cEeeeccCcceeEEEe---c-c-cceEEee
Confidence 8889988876655431111 111222333 3567777776543 4888898654322221 0 0 1111122
Q ss_pred EEE-CCcEEEEEcCCCCCCCCCeEEEEECCCCcEEEeecCCCCCCCCcceEEEEE--CCEEEEEecCCCCCccCeEEEEE
Q 005043 255 ALY-DDKNLLIFGGSSKSKTLNDLYSLDFETMIWTRIKIRGFHPSPRAGCCGVLC--GTKWYIAGGGSRKKRHAETLIFD 331 (717)
Q Consensus 255 ~~~-~~~~lyV~GG~~~~~~~ndv~~yd~~t~~W~~v~~~g~~P~~R~~~sav~~--~~~IyV~GG~~~~~~~~dv~~yD 331 (717)
+.. .+..+++.|+.++ .|.+||+.+..-...... .........++.+ ++..++.|+.++. |.+||
T Consensus 257 ~~~p~~~~~~~s~s~d~-----~v~iwd~~~~~~~~~~~~--~~~h~~~v~~~~~spdg~~l~s~~~D~~-----i~iwd 324 (435)
T 4e54_B 257 ALNPCCDWFLATASVDQ-----TVKIWDLRQVRGKASFLY--SLPHRHPVNAACFSPDGARLLTTDQKSE-----IRVYS 324 (435)
T ss_dssp EECTTCSSEEEEEETTS-----BCCEEETTTCCSSSCCSB--CCBCSSCEEECCBCTTSSEEEEEESSSC-----EEEEE
T ss_pred eecCCCceEEEEecCcc-----eeeEEecccccccceEEE--eeeccccccceeECCCCCeeEEEcCCCE-----EEEEE
Confidence 222 2334677777653 367888765431110000 0000111122222 5677778876644 88999
Q ss_pred CCCCc
Q 005043 332 ILKGE 336 (717)
Q Consensus 332 ~~t~~ 336 (717)
+.+..
T Consensus 325 ~~~~~ 329 (435)
T 4e54_B 325 ASQWD 329 (435)
T ss_dssp SSSSS
T ss_pred CCCCc
Confidence 87654
No 101
>3pe7_A Oligogalacturonate lyase; seven-bladed beta-propeller; 1.65A {Yersinia enterocolitica subsp}
Probab=96.23 E-value=0.36 Score=50.51 Aligned_cols=208 Identities=12% Similarity=0.033 Sum_probs=99.0
Q ss_pred ceEEEEEECCCCcEEEeeecCCCCCCceeeEEEEE-CCEEEEEccccCCCCCcCcEEEEEcCCCceEeccCCCCCCCCCc
Q 005043 172 RVSVWTFDTETECWSVVEAKGDIPVARSGHTVVRA-SSVLILFGGEDGKRRKLNDLHMFDLKSLTWLPLHCTGTGPSPRS 250 (717)
Q Consensus 172 ~~~v~~yD~~t~~W~~l~~~g~~P~~R~~hs~~~~-~~~Lyv~GG~~~~~~~~~~v~~yD~~t~~W~~l~~~g~~P~~R~ 250 (717)
...++++|+.+++-..+... .....+....- +++.+++............+|.+|+.+.....+. ..+....
T Consensus 167 ~~~l~~~d~~~g~~~~l~~~----~~~~~~~~~sp~dg~~l~~~~~~~~~~~~~~l~~~d~~~~~~~~l~---~~~~~~~ 239 (388)
T 3pe7_A 167 CCRLMRVDLKTGESTVILQE----NQWLGHPIYRPYDDSTVAFCHEGPHDLVDARMWLINEDGTNMRKVK---THAEGES 239 (388)
T ss_dssp CEEEEEEETTTCCEEEEEEE----SSCEEEEEEETTEEEEEEEEECSCTTTSSCSEEEEETTSCCCEESC---CCCTTEE
T ss_pred cceEEEEECCCCceEEeecC----CccccccEECCCCCCEEEEEEecCCCCCcceEEEEeCCCCceEEee---eCCCCcc
Confidence 35799999999887666531 12223333333 4554444333222223468999999887776664 2111111
Q ss_pred ccEEEEE-CCcEEEEEcCCCCCCCCCeEEEEECCCCcEEEeecCCCCC---CCCcceEEEEECCEEEEEec----CCCCC
Q 005043 251 NHVAALY-DDKNLLIFGGSSKSKTLNDLYSLDFETMIWTRIKIRGFHP---SPRAGCCGVLCGTKWYIAGG----GSRKK 322 (717)
Q Consensus 251 ~~aa~~~-~~~~lyV~GG~~~~~~~ndv~~yd~~t~~W~~v~~~g~~P---~~R~~~sav~~~~~IyV~GG----~~~~~ 322 (717)
....+.. +++.|+..+... ......+++||+.++.-+.+...+... ....+......+..|++... +. ..
T Consensus 240 ~~~~~~spdg~~l~~~~~~~-~~~~~~l~~~d~~~g~~~~l~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~-~~ 317 (388)
T 3pe7_A 240 CTHEFWVPDGSALVYVSYLK-GSPDRFIYSADPETLENRQLTSMPACSHLMSNYDGSLMVGDGSDAPVDVQDDSGYK-IE 317 (388)
T ss_dssp EEEEEECTTSSCEEEEEEET-TCCCEEEEEECTTTCCEEEEEEECCEEEEEECTTSSEEEEEECCC-------------C
T ss_pred cccceECCCCCEEEEEecCC-CCCcceEEEEecCCCceEEEEcCCCceeeeecCCCCeEccCCCcceeEeeeccccc-cC
Confidence 1122232 445343333221 111225999999998877765431100 00001111222333443211 01 11
Q ss_pred ccCeEEEEECCCCcEEEeecCCCCCCC---C-CcceEEEEEEeCCCcEEEEEcCCCCCCCCeEEEEEccCCcc
Q 005043 323 RHAETLIFDILKGEWSVAITSPSSSVT---S-NKGFTLVLVQHKEKDFLVAFGGIKKEPSNQVEVLSIEKNES 391 (717)
Q Consensus 323 ~~~dv~~yD~~t~~W~~l~~~p~~~~~---~-r~g~s~v~v~~~~~~~I~v~GG~~~~~~n~v~vyd~~~~eW 391 (717)
....++++|+.+.....+...+..... . ......+.+. +++..|+......+. ..+|.+++....|
T Consensus 318 ~~~~i~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~s-pDg~~l~~~s~~~g~--~~l~~~~l~~~~~ 387 (388)
T 3pe7_A 318 NDPFLYVFNMKNGTQHRVARHDTSWKVFEGDRQVTHPHPSFT-PDDKQILFTSDVHGK--PALYLATLPESVW 387 (388)
T ss_dssp CCCEEEEEETTTTEEEEEEECCCCCCCBTTBSSTTCCCCEEC-TTSSEEEEEECTTSS--CEEEEEECCGGGG
T ss_pred CCCEEEEEeccCCceEEeccccCcccccccccccCCCCccCC-CCCCEEEEEecCCCc--eeEEEEECChhcc
Confidence 235799999999887776543221000 0 0001122332 234455554444333 4799999887765
No 102
>4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a
Probab=96.20 E-value=0.33 Score=49.44 Aligned_cols=237 Identities=11% Similarity=0.049 Sum_probs=111.9
Q ss_pred CCEEEEEcccCCCCCcccEEEEEcCCCceEEccccccCCCCCCCCCCCcccceEEEEECCEEEEEeccCCCCCCceEEEE
Q 005043 98 GNKMIVVGGESGNGLLDDVQVLNFDRFSWTAASSKLYLSPSSLPLKIPACRGHSLISWGKKVLLVGGKTDSGSDRVSVWT 177 (717)
Q Consensus 98 ~~~lyV~GG~~~~~~~~~v~~yd~~t~~W~~l~~~~~~~~~~~~~~~p~r~~hs~v~~~~~Iyv~GG~~~~~~~~~~v~~ 177 (717)
++.+++.|+.++ .+..++............ .............+..++.|+.+. .+..
T Consensus 97 dg~~l~s~~~d~-----~i~~~~~~~~~~~~~~~~-----------~~~~~~~~~~~~~~~~l~s~s~d~------~~~~ 154 (340)
T 4aow_A 97 DGQFALSGSWDG-----TLRLWDLTTGTTTRRFVG-----------HTKDVLSVAFSSDNRQIVSGSRDK------TIKL 154 (340)
T ss_dssp TSSEEEEEETTS-----EEEEEETTTTEEEEEEEC-----------CSSCEEEEEECTTSSCEEEEETTS------CEEE
T ss_pred CCCEEEEEcccc-----cceEEeecccceeeeecC-----------CCCceeEEEEeecCccceeecCCC------eEEE
Confidence 456667777553 467788777654443321 111111112222455666666532 4677
Q ss_pred EECCCCcEEEeeecCCCCCCceeeEEEEE---CCEEEEEccccCCCCCcCcEEEEEcCCCceEeccCCCCCCCCCcccEE
Q 005043 178 FDTETECWSVVEAKGDIPVARSGHTVVRA---SSVLILFGGEDGKRRKLNDLHMFDLKSLTWLPLHCTGTGPSPRSNHVA 254 (717)
Q Consensus 178 yD~~t~~W~~l~~~g~~P~~R~~hs~~~~---~~~Lyv~GG~~~~~~~~~~v~~yD~~t~~W~~l~~~g~~P~~R~~~aa 254 (717)
||.....-..... .........+... .+.+++.||.+. .+.+||+.+......- . .....-.++
T Consensus 155 ~d~~~~~~~~~~~---~~~~~~v~~~~~~~~~~~~~~~s~~~d~------~i~i~d~~~~~~~~~~---~-~h~~~v~~~ 221 (340)
T 4aow_A 155 WNTLGVCKYTVQD---ESHSEWVSCVRFSPNSSNPIIVSCGWDK------LVKVWNLANCKLKTNH---I-GHTGYLNTV 221 (340)
T ss_dssp ECTTSCEEEEECS---SSCSSCEEEEEECSCSSSCEEEEEETTS------CEEEEETTTTEEEEEE---C-CCSSCEEEE
T ss_pred EEeCCCceEEEEe---ccccCcccceEEccCCCCcEEEEEcCCC------EEEEEECCCCceeeEe---c-CCCCcEEEE
Confidence 7776554333221 1111111112221 235666666443 3788898876644321 1 111112233
Q ss_pred EEECCcEEEEEcCCCCCCCCCeEEEEECCCCcEEEeecCCCCCCCCcceEEEEECCEEEEEecCCCCCccCeEEEEECCC
Q 005043 255 ALYDDKNLLIFGGSSKSKTLNDLYSLDFETMIWTRIKIRGFHPSPRAGCCGVLCGTKWYIAGGGSRKKRHAETLIFDILK 334 (717)
Q Consensus 255 ~~~~~~~lyV~GG~~~~~~~ndv~~yd~~t~~W~~v~~~g~~P~~R~~~sav~~~~~IyV~GG~~~~~~~~dv~~yD~~t 334 (717)
+...+..+++.|+.++ .+.+||+.+..-...... .....+++...+..++.|+.+ ..+.+||+.+
T Consensus 222 ~~s~~~~~l~s~s~Dg-----~i~iwd~~~~~~~~~~~~-----~~~v~~~~~~~~~~~~~~~~d-----~~i~iwd~~~ 286 (340)
T 4aow_A 222 TVSPDGSLCASGGKDG-----QAMLWDLNEGKHLYTLDG-----GDIINALCFSPNRYWLCAATG-----PSIKIWDLEG 286 (340)
T ss_dssp EECTTSSEEEEEETTC-----EEEEEETTTTEEEEEEEC-----SSCEEEEEECSSSSEEEEEET-----TEEEEEETTT
T ss_pred EECCCCCEEEEEeCCC-----eEEEEEeccCceeeeecC-----CceEEeeecCCCCceeeccCC-----CEEEEEECCC
Confidence 3344433777777653 588999877654332221 112223333344455666644 3488899887
Q ss_pred CcEEEeecCCCCC---CCCCcceEEEEEEeCCCcEEEEEcCCCCCCCCeEEEEEccCCc
Q 005043 335 GEWSVAITSPSSS---VTSNKGFTLVLVQHKEKDFLVAFGGIKKEPSNQVEVLSIEKNE 390 (717)
Q Consensus 335 ~~W~~l~~~p~~~---~~~r~g~s~v~v~~~~~~~I~v~GG~~~~~~n~v~vyd~~~~e 390 (717)
..-......+... .........+.+. .++.+++.||.++ .|.+||+.+.+
T Consensus 287 ~~~~~~~~~~~~~~~~~~h~~~v~~l~~s--~dg~~l~sgs~Dg----~v~iW~~~tGt 339 (340)
T 4aow_A 287 KIIVDELKQEVISTSSKAEPPQCTSLAWS--ADGQTLFAGYTDN----LVRVWQVTIGT 339 (340)
T ss_dssp TEEEEEECCC-------CCCCCEEEEEEC--TTSSEEEEEETTS----CEEEEEEEC--
T ss_pred CeEEEeccccceeeeccCCCCCEEEEEEC--CCCCEEEEEeCCC----EEEEEeCCCcC
Confidence 6543321111000 0011122233332 2344666777654 57888887653
No 103
>3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe}
Probab=96.20 E-value=0.095 Score=54.82 Aligned_cols=241 Identities=13% Similarity=0.056 Sum_probs=109.4
Q ss_pred CCEEEEEcccCCCCCcccEEEEEcCCCceEEccccccCCCCCCCCCCCcccceEEEEE-CCEEEEEeccCCCCCCceEEE
Q 005043 98 GNKMIVVGGESGNGLLDDVQVLNFDRFSWTAASSKLYLSPSSLPLKIPACRGHSLISW-GKKVLLVGGKTDSGSDRVSVW 176 (717)
Q Consensus 98 ~~~lyV~GG~~~~~~~~~v~~yd~~t~~W~~l~~~~~~~~~~~~~~~p~r~~hs~v~~-~~~Iyv~GG~~~~~~~~~~v~ 176 (717)
++++++.|+.++ .+.+||+.+..|..+... ......-.+++.. ++.+++.|+.+. .+.
T Consensus 22 ~g~~l~~~~~d~-----~i~iw~~~~~~~~~~~~~----------~~h~~~v~~~~~s~~~~~l~s~s~d~------~v~ 80 (377)
T 3dwl_C 22 QRTEFVTTTATN-----QVELYEQDGNGWKHARTF----------SDHDKIVTCVDWAPKSNRIVTCSQDR------NAY 80 (377)
T ss_dssp SSSEEECCCSSS-----CBCEEEEETTEEEECCCB----------CCCSSCEEEEEECTTTCCEEEEETTS------SEE
T ss_pred CCCEEEEecCCC-----EEEEEEccCCceEEEEEE----------ecCCceEEEEEEeCCCCEEEEEeCCC------eEE
Confidence 455667776543 478889888888776652 1111112233332 466777777532 488
Q ss_pred EEECCCCc-EEEeeecCCCCCCceeeEEEEE-CCEEEEEccccCCCCCcCcEEEEEcCCCc-eEeccCCCCCCCCCcccE
Q 005043 177 TFDTETEC-WSVVEAKGDIPVARSGHTVVRA-SSVLILFGGEDGKRRKLNDLHMFDLKSLT-WLPLHCTGTGPSPRSNHV 253 (717)
Q Consensus 177 ~yD~~t~~-W~~l~~~g~~P~~R~~hs~~~~-~~~Lyv~GG~~~~~~~~~~v~~yD~~t~~-W~~l~~~g~~P~~R~~~a 253 (717)
+||+.+.. |...... ......-.+++.. ++.+++.|+.++ .+.+||+.+.. |..+... ..+....-.+
T Consensus 81 vwd~~~~~~~~~~~~~--~~~~~~v~~~~~~~~~~~l~~~~~d~------~i~iwd~~~~~~~~~~~~~-~~~h~~~v~~ 151 (377)
T 3dwl_C 81 VYEKRPDGTWKQTLVL--LRLNRAATFVRWSPNEDKFAVGSGAR------VISVCYFEQENDWWVSKHL-KRPLRSTILS 151 (377)
T ss_dssp EC------CCCCEEEC--CCCSSCEEEEECCTTSSCCEEEESSS------CEEECCC-----CCCCEEE-CSSCCSCEEE
T ss_pred EEEcCCCCceeeeeEe--cccCCceEEEEECCCCCEEEEEecCC------eEEEEEECCcccceeeeEe-ecccCCCeEE
Confidence 88888766 4433321 1111122223222 456777776543 37788887664 3322211 1112222233
Q ss_pred EEEECCcEEEEEcCCCCCCCCCeEEEEECCCCcE----------------EEeecCCCCCCCCcceEEEEE--CCEEEEE
Q 005043 254 AALYDDKNLLIFGGSSKSKTLNDLYSLDFETMIW----------------TRIKIRGFHPSPRAGCCGVLC--GTKWYIA 315 (717)
Q Consensus 254 a~~~~~~~lyV~GG~~~~~~~ndv~~yd~~t~~W----------------~~v~~~g~~P~~R~~~sav~~--~~~IyV~ 315 (717)
++...+..+++.|+.++ .+..||+.+... ..+... .. .....++.+ ++++++.
T Consensus 152 ~~~~~~~~~l~~~~~d~-----~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~-~~~v~~~~~sp~~~~l~~ 222 (377)
T 3dwl_C 152 LDWHPNNVLLAAGCADR-----KAYVLSAYVRDVDAKPEASVWGSRLPFNTVCAEY---PS-GGWVHAVGFSPSGNALAY 222 (377)
T ss_dssp EEECTTSSEEEEEESSS-----CEEEEEECCSSCC-CCCSCSSCSCCCEEEEEECC---CC-SSSEEEEEECTTSSCEEE
T ss_pred EEEcCCCCEEEEEeCCC-----EEEEEEEEecccCCCccccccccccchhhhhhcc---cC-CceEEEEEECCCCCEEEE
Confidence 44444443677777653 488888754331 111111 11 111222222 5677777
Q ss_pred ecCCCCCccCeEEEEECCCCcE--EEeecCCCCCCCCCcceEEEEEEeCCCcEEEEEcCCCCCCCCeEEEEEccCCcccC
Q 005043 316 GGGSRKKRHAETLIFDILKGEW--SVAITSPSSSVTSNKGFTLVLVQHKEKDFLVAFGGIKKEPSNQVEVLSIEKNESSM 393 (717)
Q Consensus 316 GG~~~~~~~~dv~~yD~~t~~W--~~l~~~p~~~~~~r~g~s~v~v~~~~~~~I~v~GG~~~~~~n~v~vyd~~~~eW~~ 393 (717)
|+.++ .+.+||+.+..- ..+.... ........+.+.. ++.+++.|+.+ .+.+|+.....|..
T Consensus 223 ~~~d~-----~i~iwd~~~~~~~~~~~~~~~----~~~~~v~~~~~s~--~~~~l~~~~~~-----~~~~~~~~~~~~~~ 286 (377)
T 3dwl_C 223 AGHDS-----SVTIAYPSAPEQPPRALITVK----LSQLPLRSLLWAN--ESAIVAAGYNY-----SPILLQGNESGWAH 286 (377)
T ss_dssp EETTT-----EEC-CEECSTTSCEEECCCEE----CSSSCEEEEEEEE--TTEEEEEESSS-----SEEEECCCC---CC
T ss_pred EeCCC-----cEEEEECCCCCCcceeeEeec----CCCCceEEEEEcC--CCCEEEEEcCC-----cEEEEEeCCCceEE
Confidence 77553 477888776543 1111101 1111223344433 45566666532 35577776655543
No 104
>2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus}
Probab=96.16 E-value=0.91 Score=47.50 Aligned_cols=229 Identities=14% Similarity=0.090 Sum_probs=113.2
Q ss_pred CCEEEEEcccCCCCCcccEEEEEcCCCceEEccccccCCCCCCCCCCCcccceEEE-EECCEEEEEeccCCCCCCceEEE
Q 005043 98 GNKMIVVGGESGNGLLDDVQVLNFDRFSWTAASSKLYLSPSSLPLKIPACRGHSLI-SWGKKVLLVGGKTDSGSDRVSVW 176 (717)
Q Consensus 98 ~~~lyV~GG~~~~~~~~~v~~yd~~t~~W~~l~~~~~~~~~~~~~~~p~r~~hs~v-~~~~~Iyv~GG~~~~~~~~~~v~ 176 (717)
++..++.||.++ .+.+||..+......-.. +...-.+++ .-++..++.||.+. .+.
T Consensus 75 d~~~l~s~s~Dg-----~v~vWd~~~~~~~~~~~~------------~~~~v~~~~~sp~g~~lasg~~d~------~i~ 131 (354)
T 2pbi_B 75 DKRRIVSSSQDG-----KVIVWDSFTTNKEHAVTM------------PCTWVMACAYAPSGCAIACGGLDN------KCS 131 (354)
T ss_dssp TSSEEEEEETTS-----EEEEEETTTCCEEEEEEC------------SSSCCCEEEECTTSSEEEEESTTS------EEE
T ss_pred CCCEEEEEeCCC-----eEEEEECCCCCcceEEec------------CCCCEEEEEECCCCCEEEEeeCCC------CEE
Confidence 455666676553 577888776544332221 111112222 22567778888642 466
Q ss_pred EEECCCCcE-------EEeeecCCCCCCceeeEEEEE-CCEEEEEccccCCCCCcCcEEEEEcCCCceEeccCCCCCCCC
Q 005043 177 TFDTETECW-------SVVEAKGDIPVARSGHTVVRA-SSVLILFGGEDGKRRKLNDLHMFDLKSLTWLPLHCTGTGPSP 248 (717)
Q Consensus 177 ~yD~~t~~W-------~~l~~~g~~P~~R~~hs~~~~-~~~Lyv~GG~~~~~~~~~~v~~yD~~t~~W~~l~~~g~~P~~ 248 (717)
+|+.....- ..+.. . ...-.++... ++..++.|+.+ ..+.+||+.+.+....- .+ ...
T Consensus 132 v~~~~~~~~~~~~~~~~~~~~----h-~~~v~~~~~~~~~~~l~t~s~D------~~v~lwd~~~~~~~~~~-~~--h~~ 197 (354)
T 2pbi_B 132 VYPLTFDKNENMAAKKKSVAM----H-TNYLSACSFTNSDMQILTASGD------GTCALWDVESGQLLQSF-HG--HGA 197 (354)
T ss_dssp EEECCCCTTCCSGGGCEEEEE----C-SSCEEEEEECSSSSEEEEEETT------SEEEEEETTTCCEEEEE-EC--CSS
T ss_pred EEEEeccccccccccceeeec----c-CCcEEEEEEeCCCCEEEEEeCC------CcEEEEeCCCCeEEEEE-cC--CCC
Confidence 776643210 01110 0 0011122222 34455555543 34788898877643221 01 011
Q ss_pred CcccEEEEE---CCcEEEEEcCCCCCCCCCeEEEEECCCCcEEEeecCCCCCCCCcceEEEEE--CCEEEEEecCCCCCc
Q 005043 249 RSNHVAALY---DDKNLLIFGGSSKSKTLNDLYSLDFETMIWTRIKIRGFHPSPRAGCCGVLC--GTKWYIAGGGSRKKR 323 (717)
Q Consensus 249 R~~~aa~~~---~~~~lyV~GG~~~~~~~ndv~~yd~~t~~W~~v~~~g~~P~~R~~~sav~~--~~~IyV~GG~~~~~~ 323 (717)
. -.+.... ++. +++.|+.++ .+..||+.+......-.. ......++.+ ++.+++.|+.++.
T Consensus 198 ~-v~~~~~~~~~~g~-~l~sgs~Dg-----~v~~wd~~~~~~~~~~~~-----h~~~v~~v~~~p~~~~l~s~s~D~~-- 263 (354)
T 2pbi_B 198 D-VLCLDLAPSETGN-TFVSGGCDK-----KAMVWDMRSGQCVQAFET-----HESDVNSVRYYPSGDAFASGSDDAT-- 263 (354)
T ss_dssp C-EEEEEECCCSSCC-EEEEEETTS-----CEEEEETTTCCEEEEECC-----CSSCEEEEEECTTSSEEEEEETTSC--
T ss_pred C-eEEEEEEeCCCCC-EEEEEeCCC-----eEEEEECCCCcEEEEecC-----CCCCeEEEEEeCCCCEEEEEeCCCe--
Confidence 1 1112222 234 777787764 489999988775443211 1111222333 5677888886644
Q ss_pred cCeEEEEECCCCcEEEeecCCCCCCCCCcceEEEEEEeCCCcEEEEEcCCCCCCCCeEEEEEccCCc
Q 005043 324 HAETLIFDILKGEWSVAITSPSSSVTSNKGFTLVLVQHKEKDFLVAFGGIKKEPSNQVEVLSIEKNE 390 (717)
Q Consensus 324 ~~dv~~yD~~t~~W~~l~~~p~~~~~~r~g~s~v~v~~~~~~~I~v~GG~~~~~~n~v~vyd~~~~e 390 (717)
+.+||+.+..-..... . .....+...+.+.. ++.+++.|+.++ .+.+||+.+.+
T Consensus 264 ---v~lwd~~~~~~~~~~~--~--~~~~~~~~~~~~s~--~g~~l~~g~~d~----~i~vwd~~~~~ 317 (354)
T 2pbi_B 264 ---CRLYDLRADREVAIYS--K--ESIIFGASSVDFSL--SGRLLFAGYNDY----TINVWDVLKGS 317 (354)
T ss_dssp ---EEEEETTTTEEEEEEC--C--TTCCSCEEEEEECT--TSSEEEEEETTS----CEEEEETTTCS
T ss_pred ---EEEEECCCCcEEEEEc--C--CCcccceeEEEEeC--CCCEEEEEECCC----cEEEEECCCCc
Confidence 8899998765333221 1 11222334444432 444666666543 58888886654
No 105
>2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae}
Probab=96.14 E-value=0.84 Score=49.32 Aligned_cols=112 Identities=13% Similarity=0.100 Sum_probs=57.5
Q ss_pred CCEEEEEeccCCCCCCceEEEEEECCCCcEEEeeecCCCC-CCceeeEEEE-EC---CEEEEEccccCCCCCcCcEEEEE
Q 005043 156 GKKVLLVGGKTDSGSDRVSVWTFDTETECWSVVEAKGDIP-VARSGHTVVR-AS---SVLILFGGEDGKRRKLNDLHMFD 230 (717)
Q Consensus 156 ~~~Iyv~GG~~~~~~~~~~v~~yD~~t~~W~~l~~~g~~P-~~R~~hs~~~-~~---~~Lyv~GG~~~~~~~~~~v~~yD 230 (717)
++..+++|+.. ..++.|++.+........ ..+. ....-.+++. -+ +.+++.|+.+ ..+.+||
T Consensus 160 ~~~~l~~~~~~------g~v~~~~~~~~~~~~~~~-~~~~~h~~~v~~~~~sp~~~~~~~l~s~~~d------~~i~vwd 226 (450)
T 2vdu_B 160 DDTTVIIADKF------GDVYSIDINSIPEEKFTQ-EPILGHVSMLTDVHLIKDSDGHQFIITSDRD------EHIKISH 226 (450)
T ss_dssp TSSEEEEEETT------SEEEEEETTSCCCSSCCC-CCSEECSSCEEEEEEEECTTSCEEEEEEETT------SCEEEEE
T ss_pred CCCEEEEEeCC------CcEEEEecCCcccccccc-eeeecccCceEEEEEcCCCCCCcEEEEEcCC------CcEEEEE
Confidence 55666777642 268899887654321000 0000 0111122222 35 6778887754 3588899
Q ss_pred cCCCceEeccCCCCCCCCCcccEEEEECCcEEEEEcCCCCCCCCCeEEEEECCCCcEEE
Q 005043 231 LKSLTWLPLHCTGTGPSPRSNHVAALYDDKNLLIFGGSSKSKTLNDLYSLDFETMIWTR 289 (717)
Q Consensus 231 ~~t~~W~~l~~~g~~P~~R~~~aa~~~~~~~lyV~GG~~~~~~~ndv~~yd~~t~~W~~ 289 (717)
+.+......-..+ ...... +++..+++ +++.|+.+ ..|.+||+.++....
T Consensus 227 ~~~~~~~~~~~~~--h~~~v~-~~~~sd~~-~l~s~~~d-----~~v~vwd~~~~~~~~ 276 (450)
T 2vdu_B 227 YPQCFIVDKWLFG--HKHFVS-SICCGKDY-LLLSAGGD-----DKIFAWDWKTGKNLS 276 (450)
T ss_dssp ESCTTCEEEECCC--CSSCEE-EEEECSTT-EEEEEESS-----SEEEEEETTTCCEEE
T ss_pred CCCCceeeeeecC--CCCceE-EEEECCCC-EEEEEeCC-----CeEEEEECCCCcEee
Confidence 8776543221111 111112 22223566 66677654 369999998876443
No 106
>2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii}
Probab=96.13 E-value=1.2 Score=44.19 Aligned_cols=225 Identities=9% Similarity=-0.020 Sum_probs=117.8
Q ss_pred CCEEEEEcccCCCCCcccEEEEEcCCCceEEccccccCCCCCCCCCCCcccceEEEEE-CCEEEEEeccCCCCCCceEEE
Q 005043 98 GNKMIVVGGESGNGLLDDVQVLNFDRFSWTAASSKLYLSPSSLPLKIPACRGHSLISW-GKKVLLVGGKTDSGSDRVSVW 176 (717)
Q Consensus 98 ~~~lyV~GG~~~~~~~~~v~~yd~~t~~W~~l~~~~~~~~~~~~~~~p~r~~hs~v~~-~~~Iyv~GG~~~~~~~~~~v~ 176 (717)
++.||+.... ...+.+||+. ..+...... .....-++++.. ++.+|+.... ...++
T Consensus 30 ~g~l~v~~~~-----~~~v~~~~~~-~~~~~~~~~-----------~~~~~~~~i~~~~~g~l~v~~~~------~~~v~ 86 (300)
T 2qc5_A 30 DGKVWFTQHK-----ANKISSLDQS-GRIKEFEVP-----------TPDAKVMCLIVSSLGDIWFTENG------ANKIG 86 (300)
T ss_dssp TSCEEEEETT-----TTEEEEECTT-SCEEEEECS-----------STTCCEEEEEECTTSCEEEEETT------TTEEE
T ss_pred CCCEEEEcCC-----CCeEEEECCC-CceEEEECC-----------CCCCcceeEEECCCCCEEEEecC------CCeEE
Confidence 4778887532 2368999988 666654320 111122344443 4678886432 13699
Q ss_pred EEECCCCcEEEeeecCCCCCCceeeEEEEE-CCEEEEEccccCCCCCcCcEEEEEcCCCceEeccCCCCCCCCCcccEEE
Q 005043 177 TFDTETECWSVVEAKGDIPVARSGHTVVRA-SSVLILFGGEDGKRRKLNDLHMFDLKSLTWLPLHCTGTGPSPRSNHVAA 255 (717)
Q Consensus 177 ~yD~~t~~W~~l~~~g~~P~~R~~hs~~~~-~~~Lyv~GG~~~~~~~~~~v~~yD~~t~~W~~l~~~g~~P~~R~~~aa~ 255 (717)
+||+. +++....... ....-+.++.. ++.+|+.... .+.+++||+. .+........ ....-+.++
T Consensus 87 ~~d~~-g~~~~~~~~~---~~~~~~~i~~~~~g~l~v~~~~------~~~i~~~~~~-g~~~~~~~~~---~~~~~~~i~ 152 (300)
T 2qc5_A 87 KLSKK-GGFTEYPLPQ---PDSGPYGITEGLNGDIWFTQLN------GDRIGKLTAD-GTIYEYDLPN---KGSYPAFIT 152 (300)
T ss_dssp EECTT-SCEEEEECSS---TTCCEEEEEECSTTCEEEEETT------TTEEEEECTT-SCEEEEECSS---TTCCEEEEE
T ss_pred EECCC-CCeEEecCCC---CCCCCccceECCCCCEEEEccC------CCeEEEECCC-CCEEEccCCC---CCCCceeEE
Confidence 99998 7776554211 11233444443 5788887421 2468899987 6655442111 111122333
Q ss_pred EECCcEEEEEcCCCCCCCCCeEEEEECCCCcEEEeecCCCCCCCCcc-eEEEEE-CCEEEEEecCCCCCccCeEEEEECC
Q 005043 256 LYDDKNLLIFGGSSKSKTLNDLYSLDFETMIWTRIKIRGFHPSPRAG-CCGVLC-GTKWYIAGGGSRKKRHAETLIFDIL 333 (717)
Q Consensus 256 ~~~~~~lyV~GG~~~~~~~ndv~~yd~~t~~W~~v~~~g~~P~~R~~-~sav~~-~~~IyV~GG~~~~~~~~dv~~yD~~ 333 (717)
...+..+|+....+ +.+++||+ ++.+..+.. |..... .+++.. ++.+|+..... ..+++||+
T Consensus 153 ~d~~g~l~v~~~~~-----~~i~~~~~-~g~~~~~~~----~~~~~~~~~i~~d~~g~l~v~~~~~-----~~i~~~~~- 216 (300)
T 2qc5_A 153 LGSDNALWFTENQN-----NSIGRITN-TGKLEEYPL----PTNAAAPVGITSGNDGALWFVEIMG-----NKIGRITT- 216 (300)
T ss_dssp ECTTSSEEEEETTT-----TEEEEECT-TCCEEEEEC----SSTTCCEEEEEECTTSSEEEEETTT-----TEEEEECT-
T ss_pred ECCCCCEEEEecCC-----CeEEEECC-CCcEEEeeC----CCCCCCcceEEECCCCCEEEEccCC-----CEEEEEcC-
Confidence 33333377765322 46999999 677766543 111122 233333 57888876422 35899998
Q ss_pred CCcEEEeecCCCCCCCCCcceEEEEEEeCCCcEEEEEcCCCCCCCCeEEEEEc
Q 005043 334 KGEWSVAITSPSSSVTSNKGFTLVLVQHKEKDFLVAFGGIKKEPSNQVEVLSI 386 (717)
Q Consensus 334 t~~W~~l~~~p~~~~~~r~g~s~v~v~~~~~~~I~v~GG~~~~~~n~v~vyd~ 386 (717)
+..+..... +. .......+.+. .++.||+.... .+.+.+||+
T Consensus 217 ~g~~~~~~~-~~----~~~~~~~i~~d--~~g~l~v~~~~----~~~i~~~~~ 258 (300)
T 2qc5_A 217 TGEISEYDI-PT----PNARPHAITAG--KNSEIWFTEWG----ANQIGRITN 258 (300)
T ss_dssp TCCEEEEEC-SS----TTCCEEEEEEC--STTCEEEEETT----TTEEEEECT
T ss_pred CCcEEEEEC-CC----CCCCceEEEEC--CCCCEEEeccC----CCeEEEECC
Confidence 566665431 11 11112223332 23457765422 236777776
No 107
>3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens}
Probab=96.09 E-value=1.5 Score=44.72 Aligned_cols=184 Identities=12% Similarity=0.121 Sum_probs=90.9
Q ss_pred CEEEEEcccCCCCCcccEEEEEcCCCceEEccccccCCCCCCCCCCCcccceEEEEE-CCEEEEEeccCCCCCCceEEEE
Q 005043 99 NKMIVVGGESGNGLLDDVQVLNFDRFSWTAASSKLYLSPSSLPLKIPACRGHSLISW-GKKVLLVGGKTDSGSDRVSVWT 177 (717)
Q Consensus 99 ~~lyV~GG~~~~~~~~~v~~yd~~t~~W~~l~~~~~~~~~~~~~~~p~r~~hs~v~~-~~~Iyv~GG~~~~~~~~~~v~~ 177 (717)
+.+++.|+.++ .+.+||+.+......... ......-.+++.. ++..++.|+.+ ..+.+
T Consensus 54 g~~l~~~~~dg-----~i~iw~~~~~~~~~~~~~----------~~h~~~v~~~~~~~~~~~l~s~~~d------g~v~i 112 (368)
T 3mmy_A 54 GNFLIAGSWAN-----DVRCWEVQDSGQTIPKAQ----------QMHTGPVLDVCWSDDGSKVFTASCD------KTAKM 112 (368)
T ss_dssp SEEEEEEETTS-----EEEEEEECTTSCEEEEEE----------EECSSCEEEEEECTTSSEEEEEETT------SEEEE
T ss_pred ceEEEEECCCC-----cEEEEEcCCCCceeEEEe----------ccccCCEEEEEECcCCCEEEEEcCC------CcEEE
Confidence 37888887653 488888876333221110 0001111222322 56666677653 26899
Q ss_pred EECCCCcEEEeeecCCCCCCceeeEEEE---ECCEEEEEccccCCCCCcCcEEEEEcCCCceEeccCCCCCCCCCcccEE
Q 005043 178 FDTETECWSVVEAKGDIPVARSGHTVVR---ASSVLILFGGEDGKRRKLNDLHMFDLKSLTWLPLHCTGTGPSPRSNHVA 254 (717)
Q Consensus 178 yD~~t~~W~~l~~~g~~P~~R~~hs~~~---~~~~Lyv~GG~~~~~~~~~~v~~yD~~t~~W~~l~~~g~~P~~R~~~aa 254 (717)
||+.+........ ... .-.++.. -++.+++.|+.+ ..+.+||+.+.+-...- .......+.
T Consensus 113 wd~~~~~~~~~~~---~~~--~v~~~~~~~~~~~~~l~~~~~d------g~i~vwd~~~~~~~~~~-----~~~~~~~~~ 176 (368)
T 3mmy_A 113 WDLSSNQAIQIAQ---HDA--PVKTIHWIKAPNYSCVMTGSWD------KTLKFWDTRSSNPMMVL-----QLPERCYCA 176 (368)
T ss_dssp EETTTTEEEEEEE---CSS--CEEEEEEEECSSCEEEEEEETT------SEEEEECSSCSSCSEEE-----ECSSCEEEE
T ss_pred EEcCCCCceeecc---ccC--ceEEEEEEeCCCCCEEEEccCC------CcEEEEECCCCcEEEEE-----ecCCCceEE
Confidence 9999887665442 111 1223332 246777777754 34888998766422211 111122223
Q ss_pred EEECCcEEEEEcCCCCCCCCCeEEEEECCCCc--EEEeecCCCCCCCCcceEE-EEEC----CEEEEEecCCCCCccCeE
Q 005043 255 ALYDDKNLLIFGGSSKSKTLNDLYSLDFETMI--WTRIKIRGFHPSPRAGCCG-VLCG----TKWYIAGGGSRKKRHAET 327 (717)
Q Consensus 255 ~~~~~~~lyV~GG~~~~~~~ndv~~yd~~t~~--W~~v~~~g~~P~~R~~~sa-v~~~----~~IyV~GG~~~~~~~~dv 327 (717)
... .. .+++++.+ ..+..|+..... +..+.. +........ +..+ ...++.|+.++ .+
T Consensus 177 ~~~-~~-~~~~~~~~-----~~i~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~dg-----~i 240 (368)
T 3mmy_A 177 DVI-YP-MAVVATAE-----RGLIVYQLENQPSEFRRIES----PLKHQHRCVAIFKDKQNKPTGFALGSIEG-----RV 240 (368)
T ss_dssp EEE-TT-EEEEEEGG-----GCEEEEECSSSCEEEEECCC----SCSSCEEEEEEEECTTSCEEEEEEEETTS-----EE
T ss_pred Eec-CC-eeEEEeCC-----CcEEEEEeccccchhhhccc----cccCCCceEEEcccCCCCCCeEEEecCCC-----cE
Confidence 333 34 33333332 247888886654 332221 122222222 2222 23366776553 47
Q ss_pred EEEECCCC
Q 005043 328 LIFDILKG 335 (717)
Q Consensus 328 ~~yD~~t~ 335 (717)
.+||+...
T Consensus 241 ~i~~~~~~ 248 (368)
T 3mmy_A 241 AIHYINPP 248 (368)
T ss_dssp EEEESSCS
T ss_pred EEEecCCC
Confidence 88888765
No 108
>2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae}
Probab=96.09 E-value=0.68 Score=47.87 Aligned_cols=199 Identities=14% Similarity=0.140 Sum_probs=95.3
Q ss_pred CCEEEEEeccCCCCCCceEEEEEECCC--CcEEEeeecCCCCCCceeeEEEEE-CCEEEEEccccCCCCCcCcEEEEEcC
Q 005043 156 GKKVLLVGGKTDSGSDRVSVWTFDTET--ECWSVVEAKGDIPVARSGHTVVRA-SSVLILFGGEDGKRRKLNDLHMFDLK 232 (717)
Q Consensus 156 ~~~Iyv~GG~~~~~~~~~~v~~yD~~t--~~W~~l~~~g~~P~~R~~hs~~~~-~~~Lyv~GG~~~~~~~~~~v~~yD~~ 232 (717)
++..++.|+.+. .+.+||+.. ..+..+.... .....-.+++.. ++.+++.||.++ .+.+||..
T Consensus 118 ~g~~las~s~D~------~v~iwd~~~~~~~~~~~~~~~--~h~~~v~~v~~~p~~~~l~s~s~D~------~i~iW~~~ 183 (330)
T 2hes_X 118 DGYYLATCSRDK------SVWIWETDESGEEYECISVLQ--EHSQDVKHVIWHPSEALLASSSYDD------TVRIWKDY 183 (330)
T ss_dssp TSCEEEEEETTS------CEEEEECCTTCCCCEEEEEEC--CCSSCEEEEEECSSSSEEEEEETTS------CEEEEEEE
T ss_pred CCCEEEEEeCCC------EEEEEeccCCCCCeEEEEEec--cCCCceEEEEECCCCCEEEEEcCCC------eEEEEECC
Confidence 566777777642 478888742 3344333210 111111222222 466777777654 37778887
Q ss_pred CCceEeccCCCCCCCCCcccEEEEECC--cEEEEEcCCCCCCCCCeEEEEECCC------CcEEEeecCCCCCCCCcceE
Q 005043 233 SLTWLPLHCTGTGPSPRSNHVAALYDD--KNLLIFGGSSKSKTLNDLYSLDFET------MIWTRIKIRGFHPSPRAGCC 304 (717)
Q Consensus 233 t~~W~~l~~~g~~P~~R~~~aa~~~~~--~~lyV~GG~~~~~~~ndv~~yd~~t------~~W~~v~~~g~~P~~R~~~s 304 (717)
+..|..+...... ...-.++....+ ..+++.|+.++ .|.+||+.+ ..|..+..... .....-.+
T Consensus 184 ~~~~~~~~~~~~h--~~~v~~~~~~~~~~~~~l~s~s~D~-----~v~iw~~~~~~~~~~~~~~~~~~~~~-~h~~~v~~ 255 (330)
T 2hes_X 184 DDDWECVAVLNGH--EGTVWSSDFDKTEGVFRLCSGSDDS-----TVRVWKYMGDDEDDQQEWVCEAILPD-VHKRQVYN 255 (330)
T ss_dssp TTEEEEEEEECCC--SSCEEEEEECCSSSSCEEEEEETTS-----CEEEEEEEEECTTSCEEEEEEEECCS-CCSSCEEE
T ss_pred CCCeeEEEEccCC--CCcEEEEEecCCCCeeEEEEEeCCC-----eEEEEEecCCCccccceeEEeeeccc-ccccceEE
Confidence 7777655321111 111112223332 33566676553 366676543 24555443211 01222233
Q ss_pred EEEECCEEEEEecCCCCCccCeEEEEECCCCcEEEeecCCCCCCCCCcceEEEEEEeCCCcEEEEEcCCCCCCCCeEEEE
Q 005043 305 GVLCGTKWYIAGGGSRKKRHAETLIFDILKGEWSVAITSPSSSVTSNKGFTLVLVQHKEKDFLVAFGGIKKEPSNQVEVL 384 (717)
Q Consensus 305 av~~~~~IyV~GG~~~~~~~~dv~~yD~~t~~W~~l~~~p~~~~~~r~g~s~v~v~~~~~~~I~v~GG~~~~~~n~v~vy 384 (717)
++...+.+++.||.++. +.+||..+..|..+...... ........+.+....++.+++.||.++ .|.+|
T Consensus 256 v~~s~~~~l~s~~~dg~-----v~iw~~~~~~~~~~~~~~~~--h~~~~v~~v~~~~~~~~~~las~s~Dg----~v~~W 324 (330)
T 2hes_X 256 VAWGFNGLIASVGADGV-----LAVYEEVDGEWKVFAKRALC--HGVYEINVVKWLELNGKTILATGGDDG----IVNFW 324 (330)
T ss_dssp EEECTTSCEEEEETTSC-----EEEEEEETTEEEEEEEESCT--TTTSCEEEEEEC-----CCEEEEETTS----EEEEE
T ss_pred EEEcCCCEEEEEeCCCE-----EEEEEcCCCceEEEeccccc--cccceEEEEEEecCCCceEEEEecCCC----cEEEE
Confidence 33334556777776543 88899888888765421110 111122333332221345677787653 46777
Q ss_pred Ecc
Q 005043 385 SIE 387 (717)
Q Consensus 385 d~~ 387 (717)
|+.
T Consensus 325 ~~~ 327 (330)
T 2hes_X 325 SLE 327 (330)
T ss_dssp EC-
T ss_pred Eec
Confidence 764
No 109
>2xdw_A Prolyl endopeptidase; alpha/beta-hydrolase, amnesia, beta-propeller, hydrolase, in; HET: PHQ TAM; 1.35A {Sus scrofa} PDB: 1qfm_A 1qfs_A* 1h2w_A* 3eq7_A* 3eq8_A* 3eq9_A* 1e8m_A* 1e8n_A 1h2z_A 1uoo_A 1uop_A 1uoq_A 1o6f_A 1h2x_A 1h2y_A* 1o6g_A 1vz3_A 1e5t_A 1vz2_A 3ddu_A*
Probab=96.07 E-value=0.61 Score=54.03 Aligned_cols=263 Identities=12% Similarity=0.025 Sum_probs=133.1
Q ss_pred EECCEEEEEcccCCCCCcccEEEEEcCCCceEEccccccCCCCCCCCCCCcccceEEEEE--CCEEEEEeccCCCCCCce
Q 005043 96 VIGNKMIVVGGESGNGLLDDVQVLNFDRFSWTAASSKLYLSPSSLPLKIPACRGHSLISW--GKKVLLVGGKTDSGSDRV 173 (717)
Q Consensus 96 ~~~~~lyV~GG~~~~~~~~~v~~yd~~t~~W~~l~~~~~~~~~~~~~~~p~r~~hs~v~~--~~~Iyv~GG~~~~~~~~~ 173 (717)
-.|+++|.+--. .......+|+.+..+..|..+-..... ............+ +++.++++... .+....
T Consensus 81 ~dG~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~lld~~~l-------~~~~~~~~~~~~~SPDg~~la~~~~~-~G~~~~ 151 (710)
T 2xdw_A 81 KKGKRYFYFYNT-GLQNQRVLYVQDSLEGEARVFLDPNIL-------SDDGTVALRGYAFSEDGEYFAYGLSA-SGSDWV 151 (710)
T ss_dssp EETTEEEEEEEC-SSCSSCEEEEESSTTSCCEEEECGGGG-------CTTSCEEEEEEEECTTSSEEEEEEEE-TTCSCE
T ss_pred EECCEEEEEEEc-CCceEEEEEEEcCCCCCcEEEECHHHh-------ccCCCEEEEEEEECCCCCEEEEEEcC-CCCceE
Confidence 345665554321 222345678888777778765331110 0001011122222 55655555432 233345
Q ss_pred EEEEEECCCCcEEEeeecCCCCCCceeeEEEEE-CCEEEEEccccCCC----------CCcCcEEEEEcCCCceE--ecc
Q 005043 174 SVWTFDTETECWSVVEAKGDIPVARSGHTVVRA-SSVLILFGGEDGKR----------RKLNDLHMFDLKSLTWL--PLH 240 (717)
Q Consensus 174 ~v~~yD~~t~~W~~l~~~g~~P~~R~~hs~~~~-~~~Lyv~GG~~~~~----------~~~~~v~~yD~~t~~W~--~l~ 240 (717)
.++++|+.++....... +... ....+.. +++.++++..+... .....++++++.+.... .+.
T Consensus 152 ~i~v~d~~tg~~~~~~~----~~~~-~~~~~wspDg~~l~~~~~~~~~~~~~~~~~~~~~~~~v~~~~l~t~~~~~~~v~ 226 (710)
T 2xdw_A 152 TIKFMKVDGAKELPDVL----ERVK-FSCMAWTHDGKGMFYNAYPQQDGKSDGTETSTNLHQKLYYHVLGTDQSEDILCA 226 (710)
T ss_dssp EEEEEETTTTEEEEEEE----EEEC-SCCEEECTTSSEEEEEECCCCSSCCSSSCCCCCCCCEEEEEETTSCGGGCEEEE
T ss_pred EEEEEECCCCCCCcccc----cCcc-cceEEEEeCCCEEEEEEECCccccccccccccCCCCEEEEEECCCCcccceEEe
Confidence 79999999998876432 1111 1223333 45544444433220 23456999999887643 221
Q ss_pred CCCCCCCCCcccEEEEE-CCcEEEEEcCCCCCCCCCeEEEEECCC------C--cEEEeecCCCCCCCCcceEEEEECCE
Q 005043 241 CTGTGPSPRSNHVAALY-DDKNLLIFGGSSKSKTLNDLYSLDFET------M--IWTRIKIRGFHPSPRAGCCGVLCGTK 311 (717)
Q Consensus 241 ~~g~~P~~R~~~aa~~~-~~~~lyV~GG~~~~~~~ndv~~yd~~t------~--~W~~v~~~g~~P~~R~~~sav~~~~~ 311 (717)
. ....+......... +++.|++... ......++++.+|+.+ . .|..+... ...........+++
T Consensus 227 -~-~~~~~~~~~~~~~SpDg~~l~~~~~-~~~~~~~~l~~~d~~~~~~~~~~~~~~~~l~~~----~~~~~~~~s~dg~~ 299 (710)
T 2xdw_A 227 -E-FPDEPKWMGGAELSDDGRYVLLSIR-EGCDPVNRLWYCDLQQESNGITGILKWVKLIDN----FEGEYDYVTNEGTV 299 (710)
T ss_dssp -C-CTTCTTCEEEEEECTTSCEEEEEEE-CSSSSCCEEEEEEGGGSSSSSCSSCCCEEEECS----SSSCEEEEEEETTE
T ss_pred -c-cCCCCeEEEEEEEcCCCCEEEEEEE-ccCCCccEEEEEECcccccccCCccceEEeeCC----CCcEEEEEeccCCE
Confidence 0 11112222333333 4454444332 2222257899999976 4 58877642 11112222334788
Q ss_pred EEEEecCCCCCccCeEEEEECCCC---cEEEeecCCCCCCCCCcceEEEEEEeCCCcEEEEEcCCCCCCCCeEEEEEccC
Q 005043 312 WYIAGGGSRKKRHAETLIFDILKG---EWSVAITSPSSSVTSNKGFTLVLVQHKEKDFLVAFGGIKKEPSNQVEVLSIEK 388 (717)
Q Consensus 312 IyV~GG~~~~~~~~dv~~yD~~t~---~W~~l~~~p~~~~~~r~g~s~v~v~~~~~~~I~v~GG~~~~~~n~v~vyd~~~ 388 (717)
||+.+..+. ....++.+|+.+. .|+.+... . .......+.+. .++.+++....++ ...++++++.+
T Consensus 300 l~~~s~~~~--~~~~l~~~d~~~~~~~~~~~l~~~--~---~~~~~~~~~~~--~~~~lv~~~~~~g--~~~l~~~~~~~ 368 (710)
T 2xdw_A 300 FTFKTNRHS--PNYRLINIDFTDPEESKWKVLVPE--H---EKDVLEWVACV--RSNFLVLCYLHDV--KNTLQLHDLAT 368 (710)
T ss_dssp EEEEECTTC--TTCEEEEEETTSCCGGGCEEEECC--C---SSCEEEEEEEE--TTTEEEEEEEETT--EEEEEEEETTT
T ss_pred EEEEECCCC--CCCEEEEEeCCCCCcccceeccCC--C---CCCeEEEEEEE--cCCEEEEEEEECC--EEEEEEEECCC
Confidence 888876432 2467999999875 58887621 1 11112222232 2566766655433 34788999855
Q ss_pred Cc
Q 005043 389 NE 390 (717)
Q Consensus 389 ~e 390 (717)
.+
T Consensus 369 g~ 370 (710)
T 2xdw_A 369 GA 370 (710)
T ss_dssp CC
T ss_pred CC
Confidence 43
No 110
>4a2l_A BT_4663, two-component system sensor histidine kinase/RESP; transcription, beta-propeller; HET: PGE PG4 MES 2PE; 2.60A {Bacteroides thetaiotaomicron} PDB: 4a2m_A*
Probab=96.07 E-value=0.3 Score=57.52 Aligned_cols=225 Identities=10% Similarity=0.043 Sum_probs=120.2
Q ss_pred cEEEEEcCCCceEEccccccCCCCCCCCCCCcccceEEEEE-CCEEEEEeccCCCCCCceEEEEEECCCCcEEEeeecC-
Q 005043 115 DVQVLNFDRFSWTAASSKLYLSPSSLPLKIPACRGHSLISW-GKKVLLVGGKTDSGSDRVSVWTFDTETECWSVVEAKG- 192 (717)
Q Consensus 115 ~v~~yd~~t~~W~~l~~~~~~~~~~~~~~~p~r~~hs~v~~-~~~Iyv~GG~~~~~~~~~~v~~yD~~t~~W~~l~~~g- 192 (717)
.+++||+.++.+....... ...+...-.+++.. ++.|++-.. . -+++||+.+++|+......
T Consensus 428 Gl~~~d~~~~~~~~~~~~~--------~~l~~~~v~~i~~d~~g~lwigt~-~-------Gl~~~~~~~~~~~~~~~~~~ 491 (795)
T 4a2l_A 428 GLSILHRNSGQVENFNQRN--------SQLVNENVYAILPDGEGNLWLGTL-S-------ALVRFNPEQRSFTTIEKEKD 491 (795)
T ss_dssp EEEEEETTTCCEEEECTTT--------SCCSCSCEEEEEECSSSCEEEEES-S-------CEEEEETTTTEEEECCBCTT
T ss_pred ceeEEeCCCCcEEEeecCC--------CCcCCCeeEEEEECCCCCEEEEec-C-------ceeEEeCCCCeEEEcccccc
Confidence 4778888877776664310 01111222333333 456666432 2 3899999999998775320
Q ss_pred --CCCCCceeeEEEEE-CCEEEEEccccCCCCCcCcEEEEEcCCCceEeccC---CCCCCCCCcccEEEEECCcEEEEEc
Q 005043 193 --DIPVARSGHTVVRA-SSVLILFGGEDGKRRKLNDLHMFDLKSLTWLPLHC---TGTGPSPRSNHVAALYDDKNLLIFG 266 (717)
Q Consensus 193 --~~P~~R~~hs~~~~-~~~Lyv~GG~~~~~~~~~~v~~yD~~t~~W~~l~~---~g~~P~~R~~~aa~~~~~~~lyV~G 266 (717)
.++.... .+++.. ++.||+... ..+++||+.+..+ .... ...++.. .-.+.+.-.+..|++..
T Consensus 492 ~~~~~~~~i-~~i~~d~~g~lWigt~--------~Gl~~~~~~~~~~-~~~~~~~~~~l~~~-~i~~i~~d~~g~lWigT 560 (795)
T 4a2l_A 492 GTPVVSKQI-TTLFRDSHKRLWIGGE--------EGLSVFKQEGLDI-QKASILPVSNVTKL-FTNCIYEASNGIIWVGT 560 (795)
T ss_dssp CCBCCCCCE-EEEEECTTCCEEEEES--------SCEEEEEEETTEE-EECCCSCSCGGGGS-CEEEEEECTTSCEEEEE
T ss_pred ccccCCceE-EEEEECCCCCEEEEeC--------CceEEEeCCCCeE-EEecCCCCCCCCCC-eeEEEEECCCCCEEEEe
Confidence 1111111 222222 467888532 3489999998888 4321 0111111 11122222333366633
Q ss_pred CCCCCCCCCeEEEEECCCCcEEEeecCCCCCCCCcceEEEEE-CCEEEEEecCCCCCccCeEEEEECCCCcEEEeecCCC
Q 005043 267 GSSKSKTLNDLYSLDFETMIWTRIKIRGFHPSPRAGCCGVLC-GTKWYIAGGGSRKKRHAETLIFDILKGEWSVAITSPS 345 (717)
Q Consensus 267 G~~~~~~~ndv~~yd~~t~~W~~v~~~g~~P~~R~~~sav~~-~~~IyV~GG~~~~~~~~dv~~yD~~t~~W~~l~~~p~ 345 (717)
.. .+++||+.++.++.......+|... ..+++.. ++.|++.+. ..+.+||+.+.++........
T Consensus 561 -~~------Gl~~~d~~~~~~~~~~~~~gl~~~~-i~~i~~d~~g~lWi~t~-------~Gl~~~~~~~~~~~~~~~~dG 625 (795)
T 4a2l_A 561 -RE------GFYCFNEKDKQIKRYNTTNGLPNNV-VYGILEDSFGRLWLSTN-------RGISCFNPETEKFRNFTESDG 625 (795)
T ss_dssp -SS------CEEEEETTTTEEEEECGGGTCSCSC-EEEEEECTTSCEEEEET-------TEEEEEETTTTEEEEECGGGT
T ss_pred -CC------CceeECCCCCcEEEeCCCCCCchhh-eEEEEECCCCCEEEEcC-------CceEEEcCCCCcEEEcCCcCC
Confidence 21 3899999999998875432233322 2333333 577887763 348899999999887653221
Q ss_pred CCCCCCcceEEEEEEeCCCcEEEEEcCCCCCCCCeEEEEEccCCc
Q 005043 346 SSVTSNKGFTLVLVQHKEKDFLVAFGGIKKEPSNQVEVLSIEKNE 390 (717)
Q Consensus 346 ~~~~~r~g~s~v~v~~~~~~~I~v~GG~~~~~~n~v~vyd~~~~e 390 (717)
.+.......+++.. .++.| .|||.+ -+..|+|....
T Consensus 626 -l~~~~f~~~~~~~~--~~G~l-~~g~~~-----Gl~~~~p~~~~ 661 (795)
T 4a2l_A 626 -LQSNQFNTASYCRT--SVGQM-YFGGIN-----GITTFRPELLL 661 (795)
T ss_dssp -CSCSCEEEEEEEEC--TTSCE-EEEETT-----EEEEECGGGCC
T ss_pred -CccccCccCceeEC--CCCeE-EEecCC-----ceEEEcHHHcc
Confidence 12122222233332 23444 567754 57889887554
No 111
>1yiq_A Quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM; 2.20A {Pseudomonas putida}
Probab=96.06 E-value=1.7 Score=50.52 Aligned_cols=128 Identities=13% Similarity=0.080 Sum_probs=72.8
Q ss_pred EEEEECCEEEEEcccCCCCCcccEEEEEcCCC--ceEEccccccCCCCCCCCCCCc--ccceEEEEECCEEEEEeccCCC
Q 005043 93 AAAVIGNKMIVVGGESGNGLLDDVQVLNFDRF--SWTAASSKLYLSPSSLPLKIPA--CRGHSLISWGKKVLLVGGKTDS 168 (717)
Q Consensus 93 aav~~~~~lyV~GG~~~~~~~~~v~~yd~~t~--~W~~l~~~~~~~~~~~~~~~p~--r~~hs~v~~~~~Iyv~GG~~~~ 168 (717)
+-++.++.||+.+.. +.++.+|..+. .|+.-....... ..... ....+.++.+++||+...
T Consensus 65 ~P~v~~g~vyv~~~~------~~v~AlD~~tG~~~W~~~~~~~~~~-----~~~~~~~~~~~~~~~~~g~v~v~~~---- 129 (689)
T 1yiq_A 65 TPIVVDGVMYTTGPF------SVVYALDARDGRLIWKYDPQSDRHR-----AGEACCDAVNRGVAVWKGKVYVGVL---- 129 (689)
T ss_dssp CCEEETTEEEEECGG------GCEEEEETTTCCEEEEECCCCCGGG-----GGGCTTCSCCCCCEEETTEEEEECT----
T ss_pred cCEEECCEEEEEcCC------CeEEEEECCCCceeEEEcCCCCccc-----cccccccCCCCccEEECCEEEEEcc----
Confidence 345679999998652 36899999876 698754311000 00000 011234567888888642
Q ss_pred CCCceEEEEEECCCCc--EEEeeecCCCCCCceeeEEEEECCEEEEEccccCCCCCcCcEEEEEcCCCc--eEec
Q 005043 169 GSDRVSVWTFDTETEC--WSVVEAKGDIPVARSGHTVVRASSVLILFGGEDGKRRKLNDLHMFDLKSLT--WLPL 239 (717)
Q Consensus 169 ~~~~~~v~~yD~~t~~--W~~l~~~g~~P~~R~~hs~~~~~~~Lyv~GG~~~~~~~~~~v~~yD~~t~~--W~~l 239 (717)
...++.+|..|++ |+.-.............+.++.++.+|+-.+.... ..-..++.||..+.+ |+.-
T Consensus 130 ---dg~l~AlDa~TG~~~W~~~~~~~~~~~~~~~~sP~v~~g~v~vg~~~~~~-~~~g~v~a~D~~tG~~~W~~~ 200 (689)
T 1yiq_A 130 ---DGRLEAIDAKTGQRAWSVDTRADHKRSYTITGAPRVVNGKVVIGNGGAEF-GVRGYVTAYDAETGKEAWRFY 200 (689)
T ss_dssp ---TSEEEEEETTTCCEEEEEECCSCTTSCCBCCSCCEEETTEEEECCBCTTT-CCBCEEEEEETTTCCEEEEEE
T ss_pred ---CCEEEEEECCCCCEeeeecCcCCCCCCccccCCcEEECCEEEEEeCCCcc-CCCCEEEEEECCCCcEEEEec
Confidence 1369999998875 88654201001112222335568888774332111 134679999998876 8754
No 112
>1kb0_A Quinohemoprotein alcohol dehydrogenase; beta-propeller fold, cytochrome C, oxidoreductase; HET: TRO HEC PQQ; 1.44A {Comamonas testosteroni} SCOP: a.3.1.6 b.70.1.1
Probab=96.06 E-value=0.8 Score=53.12 Aligned_cols=124 Identities=13% Similarity=0.077 Sum_probs=69.9
Q ss_pred EEEECCEEEEEeccCCCCCCceEEEEEECCCCc--EEEeeecCCC--C---CCceeeEEEEECCEEEEEccccCCCCCcC
Q 005043 152 LISWGKKVLLVGGKTDSGSDRVSVWTFDTETEC--WSVVEAKGDI--P---VARSGHTVVRASSVLILFGGEDGKRRKLN 224 (717)
Q Consensus 152 ~v~~~~~Iyv~GG~~~~~~~~~~v~~yD~~t~~--W~~l~~~g~~--P---~~R~~hs~~~~~~~Lyv~GG~~~~~~~~~ 224 (717)
-++.++.||+.... ..++.+|..|++ |+.-...... + ......+.++.+++||+... -.
T Consensus 73 P~v~~g~vyv~~~~-------~~v~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~a~~~~~v~v~~~-------dg 138 (677)
T 1kb0_A 73 PVVVDGIMYVSASW-------SVVHAIDTRTGNRIWTYDPQIDRSTGFKGCCDVVNRGVALWKGKVYVGAW-------DG 138 (677)
T ss_dssp CEEETTEEEEECGG-------GCEEEEETTTTEEEEEECCCCCGGGGGGSSSCSCCCCCEEETTEEEEECT-------TS
T ss_pred CEEECCEEEEECCC-------CeEEEEECCCCcEEEEEcCCCCccccccccccCCCCCceEECCEEEEEcC-------CC
Confidence 35579999998653 359999998876 8865421100 0 00122345567888888632 25
Q ss_pred cEEEEEcCCCc--eEeccCCCCCCC-CCcccEEEEECCcEEEEEcCCCCCCCCCeEEEEECCCCc--EEEee
Q 005043 225 DLHMFDLKSLT--WLPLHCTGTGPS-PRSNHVAALYDDKNLLIFGGSSKSKTLNDLYSLDFETMI--WTRIK 291 (717)
Q Consensus 225 ~v~~yD~~t~~--W~~l~~~g~~P~-~R~~~aa~~~~~~~lyV~GG~~~~~~~ndv~~yd~~t~~--W~~v~ 291 (717)
.++.+|..+++ |+.-... ..+. .....+.++.++. +|+..+.........++.||..+++ |+.-.
T Consensus 139 ~l~alD~~tG~~~W~~~~~~-~~~~~~~~~~~p~v~~~~-v~v~~~~~~~~~~g~v~a~D~~tG~~~W~~~~ 208 (677)
T 1kb0_A 139 RLIALDAATGKEVWHQNTFE-GQKGSLTITGAPRVFKGK-VIIGNGGAEYGVRGYITAYDAETGERKWRWFS 208 (677)
T ss_dssp EEEEEETTTCCEEEEEETTT-TCCSSCBCCSCCEEETTE-EEECCBCTTTCCBCEEEEEETTTCCEEEEEES
T ss_pred EEEEEECCCCCEEeeecCCc-CcCcCcccccCcEEECCE-EEEEecccccCCCCEEEEEECCCCcEEEEecc
Confidence 69999998775 8764310 1111 1112223344554 5553332222234679999998765 77643
No 113
>1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1
Probab=96.05 E-value=0.51 Score=50.57 Aligned_cols=229 Identities=10% Similarity=0.047 Sum_probs=112.2
Q ss_pred CCEEEEEcccCCCCCcccEEEEEcCCCceEEccccccCCCCCCCCCCCcccceEEEEE-CCEEEEEeccCCCCCCceEEE
Q 005043 98 GNKMIVVGGESGNGLLDDVQVLNFDRFSWTAASSKLYLSPSSLPLKIPACRGHSLISW-GKKVLLVGGKTDSGSDRVSVW 176 (717)
Q Consensus 98 ~~~lyV~GG~~~~~~~~~v~~yd~~t~~W~~l~~~~~~~~~~~~~~~p~r~~hs~v~~-~~~Iyv~GG~~~~~~~~~~v~ 176 (717)
++.+++.||.++ .+.+||..+......-. .....-.+++.. ++.+++.||.+. .+.
T Consensus 119 ~~~~l~s~s~Dg-----~i~vwd~~~~~~~~~l~------------~h~~~V~~v~~~~~~~~l~sgs~D~------~i~ 175 (410)
T 1vyh_C 119 VFSVMVSASEDA-----TIKVWDYETGDFERTLK------------GHTDSVQDISFDHSGKLLASCSADM------TIK 175 (410)
T ss_dssp SSSEEEEEESSS-----CEEEEETTTCCCCEEEC------------CCSSCEEEEEECTTSSEEEEEETTS------CCC
T ss_pred CCCEEEEEeCCC-----eEEEEECCCCcEEEEEe------------ccCCcEEEEEEcCCCCEEEEEeCCC------eEE
Confidence 356777777654 58899988764322111 011111222222 566777887642 366
Q ss_pred EEECCCCcEEEeeecCCCCCCceeeEEEEE-CCEEEEEccccCCCCCcCcEEEEEcCCCceEeccCCCCCCCCCcccEEE
Q 005043 177 TFDTETECWSVVEAKGDIPVARSGHTVVRA-SSVLILFGGEDGKRRKLNDLHMFDLKSLTWLPLHCTGTGPSPRSNHVAA 255 (717)
Q Consensus 177 ~yD~~t~~W~~l~~~g~~P~~R~~hs~~~~-~~~Lyv~GG~~~~~~~~~~v~~yD~~t~~W~~l~~~g~~P~~R~~~aa~ 255 (717)
+||+.+..-...- ......-.+++.. ++..++.||.+ ..+.+||+.+..-...- .+ ....-..+.
T Consensus 176 iwd~~~~~~~~~~----~~h~~~V~~v~~~p~~~~l~s~s~D------~~i~~wd~~~~~~~~~~-~~---h~~~v~~~~ 241 (410)
T 1vyh_C 176 LWDFQGFECIRTM----HGHDHNVSSVSIMPNGDHIVSASRD------KTIKMWEVQTGYCVKTF-TG---HREWVRMVR 241 (410)
T ss_dssp EEETTSSCEEECC----CCCSSCEEEEEECSSSSEEEEEETT------SEEEEEETTTCCEEEEE-EC---CSSCEEEEE
T ss_pred EEeCCCCceeEEE----cCCCCCEEEEEEeCCCCEEEEEeCC------CeEEEEECCCCcEEEEE-eC---CCccEEEEE
Confidence 7788765432211 0111112223332 45667777654 34888998876533211 01 111111222
Q ss_pred EECCcEEEEEcCCCCCCCCCeEEEEECCCCcEEEeecCCCCCCCCcceEEEEE----------------------CCEEE
Q 005043 256 LYDDKNLLIFGGSSKSKTLNDLYSLDFETMIWTRIKIRGFHPSPRAGCCGVLC----------------------GTKWY 313 (717)
Q Consensus 256 ~~~~~~lyV~GG~~~~~~~ndv~~yd~~t~~W~~v~~~g~~P~~R~~~sav~~----------------------~~~Iy 313 (717)
...+..+++.|+.++ .+.+||+.+......-.. ......++.+ .+.++
T Consensus 242 ~~~~g~~l~s~s~D~-----~v~vwd~~~~~~~~~~~~-----h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l 311 (410)
T 1vyh_C 242 PNQDGTLIASCSNDQ-----TVRVWVVATKECKAELRE-----HRHVVECISWAPESSYSSISEATGSETKKSGKPGPFL 311 (410)
T ss_dssp ECTTSSEEEEEETTS-----CEEEEETTTCCEEEEECC-----CSSCEEEEEECCSCGGGGGGGCCSCC-------CCEE
T ss_pred ECCCCCEEEEEcCCC-----eEEEEECCCCceeeEecC-----CCceEEEEEEcCcccccchhhhccccccccCCCCCEE
Confidence 333333677777654 488899877655432110 0001111111 25577
Q ss_pred EEecCCCCCccCeEEEEECCCCcEEEeecCCCCCCCCCcceEEEEEEeCCCcEEEEEcCCCCCCCCeEEEEEccCCc
Q 005043 314 IAGGGSRKKRHAETLIFDILKGEWSVAITSPSSSVTSNKGFTLVLVQHKEKDFLVAFGGIKKEPSNQVEVLSIEKNE 390 (717)
Q Consensus 314 V~GG~~~~~~~~dv~~yD~~t~~W~~l~~~p~~~~~~r~g~s~v~v~~~~~~~I~v~GG~~~~~~n~v~vyd~~~~e 390 (717)
+.|+.++ .+.+||+.+..-.... ... ......+.+.. ++..++.||.++ .|.+||..+.+
T Consensus 312 ~sgs~D~-----~i~iwd~~~~~~~~~~--~~h----~~~v~~v~~~~--~g~~l~s~s~D~----~i~vwd~~~~~ 371 (410)
T 1vyh_C 312 LSGSRDK-----TIKMWDVSTGMCLMTL--VGH----DNWVRGVLFHS--GGKFILSCADDK----TLRVWDYKNKR 371 (410)
T ss_dssp EEEETTS-----EEEEEETTTTEEEEEE--ECC----SSCEEEEEECS--SSSCEEEEETTT----EEEEECCTTSC
T ss_pred EEEeCCC-----eEEEEECCCCceEEEE--ECC----CCcEEEEEEcC--CCCEEEEEeCCC----eEEEEECCCCc
Confidence 7777553 4889999876432221 111 11122333322 334556666532 57888876554
No 114
>2xdw_A Prolyl endopeptidase; alpha/beta-hydrolase, amnesia, beta-propeller, hydrolase, in; HET: PHQ TAM; 1.35A {Sus scrofa} PDB: 1qfm_A 1qfs_A* 1h2w_A* 3eq7_A* 3eq8_A* 3eq9_A* 1e8m_A* 1e8n_A 1h2z_A 1uoo_A 1uop_A 1uoq_A 1o6f_A 1h2x_A 1h2y_A* 1o6g_A 1vz3_A 1e5t_A 1vz2_A 3ddu_A*
Probab=96.03 E-value=0.92 Score=52.49 Aligned_cols=253 Identities=9% Similarity=0.020 Sum_probs=127.0
Q ss_pred CCEEEEEcccCCCCCcccEEEEEcCCCceEEccccccCCCCCCCCCCCcccceEEEEE-CCEEEEEeccCCCC-------
Q 005043 98 GNKMIVVGGESGNGLLDDVQVLNFDRFSWTAASSKLYLSPSSLPLKIPACRGHSLISW-GKKVLLVGGKTDSG------- 169 (717)
Q Consensus 98 ~~~lyV~GG~~~~~~~~~v~~yd~~t~~W~~l~~~~~~~~~~~~~~~p~r~~hs~v~~-~~~Iyv~GG~~~~~------- 169 (717)
+++.++++...+......++++|+.++........ ......++.. +++.++++......
T Consensus 135 Dg~~la~~~~~~G~~~~~i~v~d~~tg~~~~~~~~-------------~~~~~~~~wspDg~~l~~~~~~~~~~~~~~~~ 201 (710)
T 2xdw_A 135 DGEYFAYGLSASGSDWVTIKFMKVDGAKELPDVLE-------------RVKFSCMAWTHDGKGMFYNAYPQQDGKSDGTE 201 (710)
T ss_dssp TSSEEEEEEEETTCSCEEEEEEETTTTEEEEEEEE-------------EECSCCEEECTTSSEEEEEECCCCSSCCSSSC
T ss_pred CCCEEEEEEcCCCCceEEEEEEECCCCCCCccccc-------------CcccceEEEEeCCCEEEEEEECCccccccccc
Confidence 45555554432222234799999999887664321 0001122222 44444444432220
Q ss_pred ---CCceEEEEEECCCCcEE--EeeecCCCCCCceeeEEEE-ECCEEEEEccccCCCCCcCcEEEEEcCC------C--c
Q 005043 170 ---SDRVSVWTFDTETECWS--VVEAKGDIPVARSGHTVVR-ASSVLILFGGEDGKRRKLNDLHMFDLKS------L--T 235 (717)
Q Consensus 170 ---~~~~~v~~yD~~t~~W~--~l~~~g~~P~~R~~hs~~~-~~~~Lyv~GG~~~~~~~~~~v~~yD~~t------~--~ 235 (717)
.....++++++.+.... .+.. ....+........ -+++.++++..... ...++++.+|+.+ . .
T Consensus 202 ~~~~~~~~v~~~~l~t~~~~~~~v~~--~~~~~~~~~~~~~SpDg~~l~~~~~~~~-~~~~~l~~~d~~~~~~~~~~~~~ 278 (710)
T 2xdw_A 202 TSTNLHQKLYYHVLGTDQSEDILCAE--FPDEPKWMGGAELSDDGRYVLLSIREGC-DPVNRLWYCDLQQESNGITGILK 278 (710)
T ss_dssp CCCCCCCEEEEEETTSCGGGCEEEEC--CTTCTTCEEEEEECTTSCEEEEEEECSS-SSCCEEEEEEGGGSSSSSCSSCC
T ss_pred cccCCCCEEEEEECCCCcccceEEec--cCCCCeEEEEEEEcCCCCEEEEEEEccC-CCccEEEEEECcccccccCCccc
Confidence 22346999999887632 2211 1111222223333 24444444332221 1247899999976 4 5
Q ss_pred eEeccCCCCCCCCCcccEEEEECCcEEEEEcCCCCCCCCCeEEEEECCCC---cEEEeecCCCCCCC-CcceEEEEE-CC
Q 005043 236 WLPLHCTGTGPSPRSNHVAALYDDKNLLIFGGSSKSKTLNDLYSLDFETM---IWTRIKIRGFHPSP-RAGCCGVLC-GT 310 (717)
Q Consensus 236 W~~l~~~g~~P~~R~~~aa~~~~~~~lyV~GG~~~~~~~ndv~~yd~~t~---~W~~v~~~g~~P~~-R~~~sav~~-~~ 310 (717)
|..+.. .... .......+++.||+.+..+. ....++.+|+.+. .|+.+... .. ..-...... ++
T Consensus 279 ~~~l~~---~~~~--~~~~~s~dg~~l~~~s~~~~--~~~~l~~~d~~~~~~~~~~~l~~~----~~~~~~~~~~~~~~~ 347 (710)
T 2xdw_A 279 WVKLID---NFEG--EYDYVTNEGTVFTFKTNRHS--PNYRLINIDFTDPEESKWKVLVPE----HEKDVLEWVACVRSN 347 (710)
T ss_dssp CEEEEC---SSSS--CEEEEEEETTEEEEEECTTC--TTCEEEEEETTSCCGGGCEEEECC----CSSCEEEEEEEETTT
T ss_pred eEEeeC---CCCc--EEEEEeccCCEEEEEECCCC--CCCEEEEEeCCCCCcccceeccCC----CCCCeEEEEEEEcCC
Confidence 777752 1111 12233445665777765432 2457999999876 58888642 22 122233445 67
Q ss_pred EEEEEecCCCCCccCeEEEEECCCCc-EEEeecCCCCCCCCCcceEEEEEEeCCCcEEE-EEcCCCCCCCCeEEEEEccC
Q 005043 311 KWYIAGGGSRKKRHAETLIFDILKGE-WSVAITSPSSSVTSNKGFTLVLVQHKEKDFLV-AFGGIKKEPSNQVEVLSIEK 388 (717)
Q Consensus 311 ~IyV~GG~~~~~~~~dv~~yD~~t~~-W~~l~~~p~~~~~~r~g~s~v~v~~~~~~~I~-v~GG~~~~~~n~v~vyd~~~ 388 (717)
++++....++. ..++++|+.+.. ...+.. + .+....+....++..|+ .+.+. ..-..++.||+.+
T Consensus 348 ~lv~~~~~~g~---~~l~~~~~~~g~~~~~l~~-----~---~~~v~~~~~s~d~~~l~~~~ss~--~~P~~i~~~d~~t 414 (710)
T 2xdw_A 348 FLVLCYLHDVK---NTLQLHDLATGALLKIFPL-----E---VGSVVGYSGQKKDTEIFYQFTSF--LSPGIIYHCDLTK 414 (710)
T ss_dssp EEEEEEEETTE---EEEEEEETTTCCEEEEECC-----C---SSEEEEEECCTTCSEEEEEEECS--SCCCEEEEEETTS
T ss_pred EEEEEEEECCE---EEEEEEECCCCCEEEecCC-----C---CceEEEEecCCCCCEEEEEEeCC--CCCCEEEEEECCC
Confidence 88877754432 468999985554 444431 1 12221111112233443 33332 2334788999877
Q ss_pred Cc
Q 005043 389 NE 390 (717)
Q Consensus 389 ~e 390 (717)
.+
T Consensus 415 g~ 416 (710)
T 2xdw_A 415 EE 416 (710)
T ss_dssp SS
T ss_pred Cc
Confidence 65
No 115
>3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae}
Probab=96.01 E-value=0.15 Score=59.81 Aligned_cols=196 Identities=11% Similarity=0.092 Sum_probs=102.3
Q ss_pred CCEEEEEeccCCCCCCceEEEEEECCCCcEEEeeecCCCCCCceeeEEEE-EC--CEEEEEccccCCCCCcCcEEEEEcC
Q 005043 156 GKKVLLVGGKTDSGSDRVSVWTFDTETECWSVVEAKGDIPVARSGHTVVR-AS--SVLILFGGEDGKRRKLNDLHMFDLK 232 (717)
Q Consensus 156 ~~~Iyv~GG~~~~~~~~~~v~~yD~~t~~W~~l~~~g~~P~~R~~hs~~~-~~--~~Lyv~GG~~~~~~~~~~v~~yD~~ 232 (717)
++..++.||.++ .+.+||..+..+..+.... .....-.+++. .+ +.+++.||.++ .+.+||+.
T Consensus 20 dg~~latg~~dg------~I~vwd~~~~~~~~~~~l~--~h~~~V~~l~~s~~~~~~~l~s~s~Dg------~I~vwd~~ 85 (753)
T 3jro_A 20 YGKRLATCSSDK------TIKIFEVEGETHKLIDTLT--GHEGPVWRVDWAHPKFGTILASCSYDG------KVLIWKEE 85 (753)
T ss_dssp SSCCEEEEETTT------EEEEEEEETTEEEEEEEEC--CCSSCEEEEEECCTTSCSEEEEEETTS------CEEEEEEE
T ss_pred CCCeEEEEECCC------cEEEEecCCCCCccceecc--CCcCceEEEEecCCCCCCEEEEEeCCC------eEEEEECC
Confidence 456677777532 5788888777776654311 11111223333 23 67777777653 48889999
Q ss_pred CCceEeccCCCCCCCCCcccEEEEEC---CcEEEEEcCCCCCCCCCeEEEEECCCCcEEEeecCCCCCCCCcceEEEEE-
Q 005043 233 SLTWLPLHCTGTGPSPRSNHVAALYD---DKNLLIFGGSSKSKTLNDLYSLDFETMIWTRIKIRGFHPSPRAGCCGVLC- 308 (717)
Q Consensus 233 t~~W~~l~~~g~~P~~R~~~aa~~~~---~~~lyV~GG~~~~~~~ndv~~yd~~t~~W~~v~~~g~~P~~R~~~sav~~- 308 (717)
++.|..+..... ....-.+++... +. +++.|+.++ .|.+||+.+..-....... ..+....+++..
T Consensus 86 ~~~~~~~~~~~~--h~~~V~~v~~sp~~~~~-~l~sgs~dg-----~I~vwdl~~~~~~~~~~~~--~~~~~v~~l~~~p 155 (753)
T 3jro_A 86 NGRWSQIAVHAV--HSASVNSVQWAPHEYGP-LLLVASSDG-----KVSVVEFKENGTTSPIIID--AHAIGVNSASWAP 155 (753)
T ss_dssp TTEEEEEEEECC--CSSCEEEEEECCGGGCS-EEEEEETTS-----EEEEEECCSSSCCCCEEEE--CCSSCEEEEEECC
T ss_pred CCcccccccccC--CCCCeEEEEECCCCCCC-EEEEEeCCC-----cEEEEEeecCCCcceeEee--cCCCceEEEEecC
Confidence 988766642111 111222333333 44 677777653 5889998765211111000 011111122221
Q ss_pred -------------CCEEEEEecCCCCCccCeEEEEECCCC--cEEEeecCCCCCCCCCcceEEEEEEeCCC--cEEEEEc
Q 005043 309 -------------GTKWYIAGGGSRKKRHAETLIFDILKG--EWSVAITSPSSSVTSNKGFTLVLVQHKEK--DFLVAFG 371 (717)
Q Consensus 309 -------------~~~IyV~GG~~~~~~~~dv~~yD~~t~--~W~~l~~~p~~~~~~r~g~s~v~v~~~~~--~~I~v~G 371 (717)
++.+++.|+.++. +.+||+.+. .+..+...... ......+.+.. ++ +.+++.|
T Consensus 156 ~~~~~~~~~~~~~d~~~l~sgs~dg~-----I~iwd~~~~~~~~~~~~~~~~h----~~~V~~l~~sp-~~~~~~~l~s~ 225 (753)
T 3jro_A 156 ATIEEDGEHNGTKESRKFVTGGADNL-----VKIWKYNSDAQTYVLESTLEGH----SDWVRDVAWSP-TVLLRSYLASV 225 (753)
T ss_dssp CC---------CGGGCCEEEEETTSC-----EEEEEEETTTTEEEEEEEECCC----SSCEEEEEECC-CCSSSEEEEEE
T ss_pred cccccccccccCCCCCEEEEEECCCe-----EEEEeccCCcccceeeeeecCC----CCcEEEEEecc-CCCCCCEEEEE
Confidence 3677788876644 778877654 44444322211 11223333332 21 5677888
Q ss_pred CCCCCCCCeEEEEEccCC
Q 005043 372 GIKKEPSNQVEVLSIEKN 389 (717)
Q Consensus 372 G~~~~~~n~v~vyd~~~~ 389 (717)
|.++ .|.+||+.+.
T Consensus 226 s~Dg----~I~iwd~~~~ 239 (753)
T 3jro_A 226 SQDR----TCIIWTQDNE 239 (753)
T ss_dssp ESSS----CEEEEEESSS
T ss_pred ecCC----EEEEecCCCC
Confidence 8654 4788888775
No 116
>3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A
Probab=96.00 E-value=0.14 Score=52.77 Aligned_cols=106 Identities=13% Similarity=0.124 Sum_probs=56.8
Q ss_pred CEEEEEcccCCCCCcccEEEEEcCCCceEEccccccCCCCCCCCCCCcccceEEEEE--CCEEEEEeccCCCCCCceEEE
Q 005043 99 NKMIVVGGESGNGLLDDVQVLNFDRFSWTAASSKLYLSPSSLPLKIPACRGHSLISW--GKKVLLVGGKTDSGSDRVSVW 176 (717)
Q Consensus 99 ~~lyV~GG~~~~~~~~~v~~yd~~t~~W~~l~~~~~~~~~~~~~~~p~r~~hs~v~~--~~~Iyv~GG~~~~~~~~~~v~ 176 (717)
+.+++.|+.++ .+.+||+.+..-...-. .....-.++... ++.+++.|+.+. .+.
T Consensus 85 ~~~l~~~~~dg-----~i~v~d~~~~~~~~~~~------------~~~~~i~~~~~~~~~~~~l~s~~~dg------~i~ 141 (366)
T 3k26_A 85 HPLLAVAGSRG-----IIRIINPITMQCIKHYV------------GHGNAINELKFHPRDPNLLLSVSKDH------ALR 141 (366)
T ss_dssp CEEEEEEETTC-----EEEEECTTTCCEEEEEE------------SCCSCEEEEEECSSCTTEEEEEETTS------CEE
T ss_pred CCEEEEecCCC-----EEEEEEchhceEeeeec------------CCCCcEEEEEECCCCCCEEEEEeCCC------eEE
Confidence 56777887653 58899988754322111 001111223332 566777877632 588
Q ss_pred EEECCCCcEEEeeecCCC-CCCceeeEEEEE-CCEEEEEccccCCCCCcCcEEEEEcCCCc
Q 005043 177 TFDTETECWSVVEAKGDI-PVARSGHTVVRA-SSVLILFGGEDGKRRKLNDLHMFDLKSLT 235 (717)
Q Consensus 177 ~yD~~t~~W~~l~~~g~~-P~~R~~hs~~~~-~~~Lyv~GG~~~~~~~~~~v~~yD~~t~~ 235 (717)
+||+.+.+-...-. .. .....-.+++.. ++..++.||.++ .+.+||+.+.+
T Consensus 142 iwd~~~~~~~~~~~--~~~~~~~~v~~~~~~~~~~~l~~~~~dg------~i~i~d~~~~~ 194 (366)
T 3k26_A 142 LWNIQTDTLVAIFG--GVEGHRDEVLSADYDLLGEKIMSCGMDH------SLKLWRINSKR 194 (366)
T ss_dssp EEETTTTEEEEEEC--STTSCSSCEEEEEECTTSSEEEEEETTS------CEEEEESCSHH
T ss_pred EEEeecCeEEEEec--ccccccCceeEEEECCCCCEEEEecCCC------CEEEEECCCCc
Confidence 99998876443321 01 111122233332 456677776543 48888887653
No 117
>3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}
Probab=96.00 E-value=1.2 Score=46.99 Aligned_cols=197 Identities=12% Similarity=0.157 Sum_probs=97.0
Q ss_pred CEEEEEeccCCCCCCceEEEEEECCCCcEEEeeecCCCCCCcee--eEEEE--ECCEEEEEccccCCCCCcCcEEEEEcC
Q 005043 157 KKVLLVGGKTDSGSDRVSVWTFDTETECWSVVEAKGDIPVARSG--HTVVR--ASSVLILFGGEDGKRRKLNDLHMFDLK 232 (717)
Q Consensus 157 ~~Iyv~GG~~~~~~~~~~v~~yD~~t~~W~~l~~~g~~P~~R~~--hs~~~--~~~~Lyv~GG~~~~~~~~~~v~~yD~~ 232 (717)
+..++.|+.+ ..+.+||+.++.-...-. ...+..... .++.. .++.+++.||.++ .+.+||+.
T Consensus 170 ~~~l~s~s~D------~~i~~wd~~~~~~~~~~~-~~~~~~h~~~v~~~~~~~~~~~~l~sgs~D~------~v~~wd~~ 236 (380)
T 3iz6_a 170 ETRLITGSGD------QTCVLWDVTTGQRISIFG-SEFPSGHTADVLSLSINSLNANMFISGSCDT------TVRLWDLR 236 (380)
T ss_dssp SSCEEEECTT------SCEEEECTTTCCEEEEEC-CCSSSSCCSCEEEEEECSSSCCEEEEEETTS------CEEEEETT
T ss_pred CCEEEEECCC------CcEEEEEcCCCcEEEEee-cccCCCCccCeEEEEeecCCCCEEEEEECCC------eEEEEECC
Confidence 3445566543 258889998876543321 011221111 12222 2567888888654 37788875
Q ss_pred CC--ceEeccCCCCCCCCCcccEEEEECCcEEEEEcCCCCCCCCCeEEEEECCCCcEEEeecCCCC--CCCCc-ceEEE-
Q 005043 233 SL--TWLPLHCTGTGPSPRSNHVAALYDDKNLLIFGGSSKSKTLNDLYSLDFETMIWTRIKIRGFH--PSPRA-GCCGV- 306 (717)
Q Consensus 233 t~--~W~~l~~~g~~P~~R~~~aa~~~~~~~lyV~GG~~~~~~~ndv~~yd~~t~~W~~v~~~g~~--P~~R~-~~sav- 306 (717)
.. ....+. + ....-.+++...+...++.|+.++ .+..||+.++.-...-..... ..... ..+++
T Consensus 237 ~~~~~~~~~~--~---h~~~v~~v~~~p~~~~l~s~s~D~-----~i~lwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~ 306 (380)
T 3iz6_a 237 ITSRAVRTYH--G---HEGDINSVKFFPDGQRFGTGSDDG-----TCRLFDMRTGHQLQVYNREPDRNDNELPIVTSVAF 306 (380)
T ss_dssp TTCCCCEEEC--C---CSSCCCEEEECTTSSEEEEECSSS-----CEEEEETTTTEEEEEECCCCSSSCCSSCSCSEEEE
T ss_pred CCCcceEEEC--C---cCCCeEEEEEecCCCeEEEEcCCC-----eEEEEECCCCcEEEEecccccccccccCceEEEEE
Confidence 32 111121 1 111122344444443778887764 489999988764433221100 00011 12222
Q ss_pred EECCEEEEEecCCCCCccCeEEEEECCCCcEEEeecCCCCCCCCCcceEEEEEEeCCCcEEEEEcCCCCCCCCeEEEEEc
Q 005043 307 LCGTKWYIAGGGSRKKRHAETLIFDILKGEWSVAITSPSSSVTSNKGFTLVLVQHKEKDFLVAFGGIKKEPSNQVEVLSI 386 (717)
Q Consensus 307 ~~~~~IyV~GG~~~~~~~~dv~~yD~~t~~W~~l~~~p~~~~~~r~g~s~v~v~~~~~~~I~v~GG~~~~~~n~v~vyd~ 386 (717)
..++++++.|+.++ .+.+||..+............ .-.....++.+.. ++..++.||.++ .+.+|++
T Consensus 307 s~~g~~l~~g~~dg-----~i~vwd~~~~~~~~~~~~~~~--~h~~~v~~l~~s~--dg~~l~sgs~D~----~i~iW~~ 373 (380)
T 3iz6_a 307 SISGRLLFAGYSNG-----DCYVWDTLLAEMVLNLGTLQN--SHEGRISCLGLSS--DGSALCTGSWDK----NLKIWAF 373 (380)
T ss_dssp CSSSSEEEEECTTS-----CEEEEETTTCCEEEEECCSCS--SCCCCCCEEEECS--SSSEEEEECTTS----CEEEEEC
T ss_pred CCCCCEEEEEECCC-----CEEEEECCCCceEEEEecccC--CCCCceEEEEECC--CCCEEEEeeCCC----CEEEEec
Confidence 23677888887654 489999877654332110000 0111122333432 445677888754 4667776
Q ss_pred cCC
Q 005043 387 EKN 389 (717)
Q Consensus 387 ~~~ 389 (717)
...
T Consensus 374 ~~~ 376 (380)
T 3iz6_a 374 SGH 376 (380)
T ss_dssp CSS
T ss_pred CCC
Confidence 543
No 118
>4a2l_A BT_4663, two-component system sensor histidine kinase/RESP; transcription, beta-propeller; HET: PGE PG4 MES 2PE; 2.60A {Bacteroides thetaiotaomicron} PDB: 4a2m_A*
Probab=95.99 E-value=0.56 Score=55.19 Aligned_cols=229 Identities=10% Similarity=-0.039 Sum_probs=118.3
Q ss_pred cEEEEEcCCCceEEccccccCCCCCCCC-CCCcccceEEEEE-CCE-EEEEeccCCCCCCceEEEEEECCCCcEEEeeec
Q 005043 115 DVQVLNFDRFSWTAASSKLYLSPSSLPL-KIPACRGHSLISW-GKK-VLLVGGKTDSGSDRVSVWTFDTETECWSVVEAK 191 (717)
Q Consensus 115 ~v~~yd~~t~~W~~l~~~~~~~~~~~~~-~~p~r~~hs~v~~-~~~-Iyv~GG~~~~~~~~~~v~~yD~~t~~W~~l~~~ 191 (717)
.+.+||+.+..+......... +. ..+...-.+++.. ++. |++ |... .-+++||+.++++......
T Consensus 378 Gl~~~~~~~~~~~~~~~~~~~-----~~~~l~~~~v~~i~~d~~g~~lWi-gt~~------~Gl~~~d~~~~~~~~~~~~ 445 (795)
T 4a2l_A 378 GLNLYNPITQRFTSYTLQEDE-----SARGIGSNNIKAVYVDEKKSLVYI-GTHA------GGLSILHRNSGQVENFNQR 445 (795)
T ss_dssp CEEEECTTTCCEEEECCC-----------CCSCSCEEEEEEETTTTEEEE-EETT------TEEEEEETTTCCEEEECTT
T ss_pred CeEEEcCCCCcEEEEecCCCC-----cccCCCCccEEEEEEcCCCCEEEE-EeCc------CceeEEeCCCCcEEEeecC
Confidence 478899988888776531000 00 0112223455554 456 555 4331 1489999999988877531
Q ss_pred C-CCCCCceeeEEEEE-CCEEEEEccccCCCCCcCcEEEEEcCCCceEeccCCC---CCCCCCcccEEEEECCcEEEEEc
Q 005043 192 G-DIPVARSGHTVVRA-SSVLILFGGEDGKRRKLNDLHMFDLKSLTWLPLHCTG---TGPSPRSNHVAALYDDKNLLIFG 266 (717)
Q Consensus 192 g-~~P~~R~~hs~~~~-~~~Lyv~GG~~~~~~~~~~v~~yD~~t~~W~~l~~~g---~~P~~R~~~aa~~~~~~~lyV~G 266 (717)
. .++.. .-.+++.. ++.||+-.. +.+++||+.+.+|+...... .++... -.+...-.+..|+|..
T Consensus 446 ~~~l~~~-~v~~i~~d~~g~lwigt~--------~Gl~~~~~~~~~~~~~~~~~~~~~~~~~~-i~~i~~d~~g~lWigt 515 (795)
T 4a2l_A 446 NSQLVNE-NVYAILPDGEGNLWLGTL--------SALVRFNPEQRSFTTIEKEKDGTPVVSKQ-ITTLFRDSHKRLWIGG 515 (795)
T ss_dssp TSCCSCS-CEEEEEECSSSCEEEEES--------SCEEEEETTTTEEEECCBCTTCCBCCCCC-EEEEEECTTCCEEEEE
T ss_pred CCCcCCC-eeEEEEECCCCCEEEEec--------CceeEEeCCCCeEEEccccccccccCCce-EEEEEECCCCCEEEEe
Confidence 1 11211 22233332 467777531 34899999999998775220 111111 1222222333467643
Q ss_pred CCCCCCCCCeEEEEECCCCcEEEeecCCCCC-CC-CcceEEEEE-CCEEEEEecCCCCCccCeEEEEECCCCcEEEeecC
Q 005043 267 GSSKSKTLNDLYSLDFETMIWTRIKIRGFHP-SP-RAGCCGVLC-GTKWYIAGGGSRKKRHAETLIFDILKGEWSVAITS 343 (717)
Q Consensus 267 G~~~~~~~ndv~~yd~~t~~W~~v~~~g~~P-~~-R~~~sav~~-~~~IyV~GG~~~~~~~~dv~~yD~~t~~W~~l~~~ 343 (717)
. +.+++||+.++.+ .+......+ .+ ....+++.. ++.|+|... . .+++||+.+.++......
T Consensus 516 ~-------~Gl~~~~~~~~~~-~~~~~~~~~~l~~~~i~~i~~d~~g~lWigT~-~------Gl~~~d~~~~~~~~~~~~ 580 (795)
T 4a2l_A 516 E-------EGLSVFKQEGLDI-QKASILPVSNVTKLFTNCIYEASNGIIWVGTR-E------GFYCFNEKDKQIKRYNTT 580 (795)
T ss_dssp S-------SCEEEEEEETTEE-EECCCSCSCGGGGSCEEEEEECTTSCEEEEES-S------CEEEEETTTTEEEEECGG
T ss_pred C-------CceEEEeCCCCeE-EEecCCCCCCCCCCeeEEEEECCCCCEEEEeC-C------CceeECCCCCcEEEeCCC
Confidence 2 2389999999888 443210001 11 111222222 577777543 1 389999999998876432
Q ss_pred CCCCCCCCcceEEEEEEeCCCcEEEEEcCCCCCCCCeEEEEEccCCcc
Q 005043 344 PSSSVTSNKGFTLVLVQHKEKDFLVAFGGIKKEPSNQVEVLSIEKNES 391 (717)
Q Consensus 344 p~~~~~~r~g~s~v~v~~~~~~~I~v~GG~~~~~~n~v~vyd~~~~eW 391 (717)
.. .+.. . ...++. ..++.|++.+. +-+..|++.+.+.
T Consensus 581 ~g-l~~~-~-i~~i~~--d~~g~lWi~t~------~Gl~~~~~~~~~~ 617 (795)
T 4a2l_A 581 NG-LPNN-V-VYGILE--DSFGRLWLSTN------RGISCFNPETEKF 617 (795)
T ss_dssp GT-CSCS-C-EEEEEE--CTTSCEEEEET------TEEEEEETTTTEE
T ss_pred CC-Cchh-h-eEEEEE--CCCCCEEEEcC------CceEEEcCCCCcE
Confidence 11 1111 1 122222 23456766553 2577788776653
No 119
>2ghs_A AGR_C_1268P; regucalcin, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; 1.55A {Agrobacterium tumefaciens str} SCOP: b.68.6.1
Probab=95.99 E-value=1 Score=46.74 Aligned_cols=192 Identities=13% Similarity=-0.002 Sum_probs=98.6
Q ss_pred CEEEEEcccCCCCCcccEEEEEcCCCceEEccccccCCCCCCCCCCCcccceEEE-EECCEEEEEeccCCCCCCceEEEE
Q 005043 99 NKMIVVGGESGNGLLDDVQVLNFDRFSWTAASSKLYLSPSSLPLKIPACRGHSLI-SWGKKVLLVGGKTDSGSDRVSVWT 177 (717)
Q Consensus 99 ~~lyV~GG~~~~~~~~~v~~yd~~t~~W~~l~~~~~~~~~~~~~~~p~r~~hs~v-~~~~~Iyv~GG~~~~~~~~~~v~~ 177 (717)
+.+|+++... ..+++||+.++....... +.. -++++ .-++++|+... ..+++
T Consensus 61 ~~l~~~d~~~-----~~i~~~d~~~~~~~~~~~-------------~~~-v~~i~~~~dg~l~v~~~--------~gl~~ 113 (326)
T 2ghs_A 61 GTAWWFNILE-----RELHELHLASGRKTVHAL-------------PFM-GSALAKISDSKQLIASD--------DGLFL 113 (326)
T ss_dssp TEEEEEEGGG-----TEEEEEETTTTEEEEEEC-------------SSC-EEEEEEEETTEEEEEET--------TEEEE
T ss_pred CEEEEEECCC-----CEEEEEECCCCcEEEEEC-------------CCc-ceEEEEeCCCeEEEEEC--------CCEEE
Confidence 6788886542 368999999876654432 111 12333 34678877542 24999
Q ss_pred EECCCCcEEEeeecCC-CCCCceeeEEEE-ECCEEEEEccccCCCCCcCcEEEEEcCCCceEeccCCCCCCCCCcccEEE
Q 005043 178 FDTETECWSVVEAKGD-IPVARSGHTVVR-ASSVLILFGGEDGKRRKLNDLHMFDLKSLTWLPLHCTGTGPSPRSNHVAA 255 (717)
Q Consensus 178 yD~~t~~W~~l~~~g~-~P~~R~~hs~~~-~~~~Lyv~GG~~~~~~~~~~v~~yD~~t~~W~~l~~~g~~P~~R~~~aa~ 255 (717)
||+.++++..+..... .+..+.. .++. -++.+|+.............+|+|| +.+...+.. ... .....+
T Consensus 114 ~d~~~g~~~~~~~~~~~~~~~~~~-~i~~d~~G~l~v~~~~~~~~~~~~~l~~~~--~g~~~~~~~--~~~---~~~~i~ 185 (326)
T 2ghs_A 114 RDTATGVLTLHAELESDLPGNRSN-DGRMHPSGALWIGTMGRKAETGAGSIYHVA--KGKVTKLFA--DIS---IPNSIC 185 (326)
T ss_dssp EETTTCCEEEEECSSTTCTTEEEE-EEEECTTSCEEEEEEETTCCTTCEEEEEEE--TTEEEEEEE--EES---SEEEEE
T ss_pred EECCCCcEEEEeeCCCCCCCCCCC-CEEECCCCCEEEEeCCCcCCCCceEEEEEe--CCcEEEeeC--CCc---ccCCeE
Confidence 9999998877653111 1112222 2222 2567776432111111245789998 466554421 111 111233
Q ss_pred EE-CCcEEEEEcCCCCCCCCCeEEEEECC--CC-c------EEEeecCCCCCCCCcceEEEEE-CCEEEEEecCCCCCcc
Q 005043 256 LY-DDKNLLIFGGSSKSKTLNDLYSLDFE--TM-I------WTRIKIRGFHPSPRAGCCGVLC-GTKWYIAGGGSRKKRH 324 (717)
Q Consensus 256 ~~-~~~~lyV~GG~~~~~~~ndv~~yd~~--t~-~------W~~v~~~g~~P~~R~~~sav~~-~~~IyV~GG~~~~~~~ 324 (717)
.. +++.+|+.... .+.|++||+. ++ . +..+... ...-.+++.. ++.+||.....
T Consensus 186 ~s~dg~~lyv~~~~-----~~~I~~~d~~~~~Gl~~~~~~~~~~~~~~-----~~~p~gi~~d~~G~lwva~~~~----- 250 (326)
T 2ghs_A 186 FSPDGTTGYFVDTK-----VNRLMRVPLDARTGLPTGKAEVFIDSTGI-----KGGMDGSVCDAEGHIWNARWGE----- 250 (326)
T ss_dssp ECTTSCEEEEEETT-----TCEEEEEEBCTTTCCBSSCCEEEEECTTS-----SSEEEEEEECTTSCEEEEEETT-----
T ss_pred EcCCCCEEEEEECC-----CCEEEEEEcccccCCcccCceEEEECCCC-----CCCCCeeEECCCCCEEEEEeCC-----
Confidence 33 44457776432 2479999975 44 2 2222110 1111223332 57788765211
Q ss_pred CeEEEEECCCCcEEEe
Q 005043 325 AETLIFDILKGEWSVA 340 (717)
Q Consensus 325 ~dv~~yD~~t~~W~~l 340 (717)
..+++||+....-..+
T Consensus 251 ~~v~~~d~~g~~~~~i 266 (326)
T 2ghs_A 251 GAVDRYDTDGNHIARY 266 (326)
T ss_dssp TEEEEECTTCCEEEEE
T ss_pred CEEEEECCCCCEEEEE
Confidence 3589999965544443
No 120
>2ecf_A Dipeptidyl peptidase IV; prolyl oligopeptidase family, peptidase family S9, hydrolase; 2.80A {Stenotrophomonas maltophilia}
Probab=95.98 E-value=0.13 Score=59.62 Aligned_cols=262 Identities=10% Similarity=-0.011 Sum_probs=121.4
Q ss_pred CCEEEEEccc-CCCCCcccEEEEEcCCCceEEccccccCCCCCCCC----CCC---------cccceEEEEECCEEEEEe
Q 005043 98 GNKMIVVGGE-SGNGLLDDVQVLNFDRFSWTAASSKLYLSPSSLPL----KIP---------ACRGHSLISWGKKVLLVG 163 (717)
Q Consensus 98 ~~~lyV~GG~-~~~~~~~~v~~yd~~t~~W~~l~~~~~~~~~~~~~----~~p---------~r~~hs~v~~~~~Iyv~G 163 (717)
+++.+++++. ++......++++|+.+.....+.......+....+ ... .........-+++.++++
T Consensus 47 dG~~la~~~~~d~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~SpDg~~l~~~ 126 (741)
T 2ecf_A 47 DGSRVTFLRGKDSDRNQLDLWSYDIGSGQTRLLVDSKVVLPGTETLSDEEKARRERQRIAAMTGIVDYQWSPDAQRLLFP 126 (741)
T ss_dssp TSSEEEEEECCSSCTTEEEEEEEETTTCCEEEEECGGGTC--------------------CCEESCCCEECTTSSEEEEE
T ss_pred CCCEEEEEeccCCCCcccEEEEEECCCCceeEccchhhcccccccccchhhhhhhhhhhccccCcceeEECCCCCEEEEE
Confidence 4555555554 44333457999999998876665421100000000 000 000111122255555554
Q ss_pred ccCCCCCCceEEEEEECCCC---cEEEeeecCCCCCCceeeEEEE-ECCEEEEEccccCCCCCcCcEEEEEcCCCceEec
Q 005043 164 GKTDSGSDRVSVWTFDTETE---CWSVVEAKGDIPVARSGHTVVR-ASSVLILFGGEDGKRRKLNDLHMFDLKSLTWLPL 239 (717)
Q Consensus 164 G~~~~~~~~~~v~~yD~~t~---~W~~l~~~g~~P~~R~~hs~~~-~~~~Lyv~GG~~~~~~~~~~v~~yD~~t~~W~~l 239 (717)
+. ..++++|+.++ .-..+.. .......++. -+++.++++.. +.++++|+.++....+
T Consensus 127 ~~-------~~i~~~d~~~~~~~~~~~l~~-----~~~~~~~~~~SPDG~~la~~~~-------~~i~~~d~~~g~~~~~ 187 (741)
T 2ecf_A 127 LG-------GELYLYDLKQEGKAAVRQLTH-----GEGFATDAKLSPKGGFVSFIRG-------RNLWVIDLASGRQMQL 187 (741)
T ss_dssp ET-------TEEEEEESSSCSTTSCCBCCC-----SSSCEEEEEECTTSSEEEEEET-------TEEEEEETTTTEEEEC
T ss_pred eC-------CcEEEEECCCCCcceEEEccc-----CCcccccccCCCCCCEEEEEeC-------CcEEEEecCCCCEEEe
Confidence 43 47999999887 5443331 1111222222 24555555431 3699999998887766
Q ss_pred cCCCCCCC-------------CCcccEEEEE-CCcEEEEEcCCCCC----------------------------CCCCeE
Q 005043 240 HCTGTGPS-------------PRSNHVAALY-DDKNLLIFGGSSKS----------------------------KTLNDL 277 (717)
Q Consensus 240 ~~~g~~P~-------------~R~~~aa~~~-~~~~lyV~GG~~~~----------------------------~~~ndv 277 (717)
...+..+. .+. ...+.. +++.| +++..+.. .....+
T Consensus 188 ~~~~~~~~~~g~~~~v~~~~~~~~-~~~~~SpDg~~l-~~~~~d~~~~~~~~~~~~~p~~~~~~~~~~~~~g~~~~~~~l 265 (741)
T 2ecf_A 188 TADGSTTIGNGIAEFVADEEMDRH-TGYWWAPDDSAI-AYARIDESPVPVQKRYEVYADRTDVIEQRYPAAGDANVQVKL 265 (741)
T ss_dssp CCCCCSSEEESCCCHHHHHHSCCC-CSEEECTTSSCE-EEEEEECTTSCEEEEEEECSSCEEEEEEECCBTTSCCCEEEE
T ss_pred ccCCccceeccccceeeeeccccc-cceEECCCCCEE-EEEEEcCCCCceEecCCCCCCcccceEeecCCCCCCCCeeEE
Confidence 42211100 001 122222 44433 33322111 012278
Q ss_pred EEEECCC-CcEEEeecCCCCCCCCc-ceEEEEECCEEEEEecCCCCCccCeEEEEECCCCcEEEeecCCCCCCCCCcceE
Q 005043 278 YSLDFET-MIWTRIKIRGFHPSPRA-GCCGVLCGTKWYIAGGGSRKKRHAETLIFDILKGEWSVAITSPSSSVTSNKGFT 355 (717)
Q Consensus 278 ~~yd~~t-~~W~~v~~~g~~P~~R~-~~sav~~~~~IyV~GG~~~~~~~~dv~~yD~~t~~W~~l~~~p~~~~~~r~g~s 355 (717)
+.+|+.+ ..-..+... .+.... ...+. -+++.++++..+.......++++|+.+.....+.......... ...
T Consensus 266 ~~~d~~~~~~~~~~~~~--~~~~~~~~~~~~-pDg~~l~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~--~~~ 340 (741)
T 2ecf_A 266 GVISPAEQAQTQWIDLG--KEQDIYLARVNW-RDPQHLSFQRQSRDQKKLDLVEVTLASNQQRVLAHETSPTWVP--LHN 340 (741)
T ss_dssp EEECSSTTCCCEEECCC--SCSSEEEEEEEE-EETTEEEEEEEETTSSEEEEEEEETTTCCEEEEEEEECSSCCC--CCS
T ss_pred EEEECCCCCceEEecCC--CCcceEEEEEEe-CCCCEEEEEEecccCCeEEEEEEECCCCceEEEEEcCCCCcCC--cCC
Confidence 8899888 765554321 011111 11222 4444444443333334467999999998877764321110000 011
Q ss_pred EEEEEeCCCcEEEEEcCCCCCCCCeEEEEEccCC
Q 005043 356 LVLVQHKEKDFLVAFGGIKKEPSNQVEVLSIEKN 389 (717)
Q Consensus 356 ~v~v~~~~~~~I~v~GG~~~~~~n~v~vyd~~~~ 389 (717)
.+.+.. ++.+++.++.++ ...+|.++....
T Consensus 341 ~~~~sp--dg~~~~~~~~~g--~~~l~~~~~~~~ 370 (741)
T 2ecf_A 341 SLRFLD--DGSILWSSERTG--FQHLYRIDSKGK 370 (741)
T ss_dssp CCEECT--TSCEEEEECTTS--SCEEEEECSSSC
T ss_pred ceEECC--CCeEEEEecCCC--ccEEEEEcCCCC
Confidence 223332 233555655443 347888886543
No 121
>3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A*
Probab=95.94 E-value=1.8 Score=44.58 Aligned_cols=238 Identities=12% Similarity=0.054 Sum_probs=122.5
Q ss_pred ccEEEEEcCCCceEEccccccCCCCCCCCCCCcccceEEEEE-CCEEEEEeccCCCCCCceEEEEEECCCC--cEEEeee
Q 005043 114 DDVQVLNFDRFSWTAASSKLYLSPSSLPLKIPACRGHSLISW-GKKVLLVGGKTDSGSDRVSVWTFDTETE--CWSVVEA 190 (717)
Q Consensus 114 ~~v~~yd~~t~~W~~l~~~~~~~~~~~~~~~p~r~~hs~v~~-~~~Iyv~GG~~~~~~~~~~v~~yD~~t~--~W~~l~~ 190 (717)
+.++++|+.+.+....... .....-+.+++. ++.||+..... ..+.+||+... .-..+..
T Consensus 69 ~~i~~~d~~~g~~~~~~~~-----------~~~~~p~gia~d~~g~l~v~d~~~------~~v~~~~~~g~~~~~~~~~~ 131 (329)
T 3fvz_A 69 DTILVIDPNNAEILQSSGK-----------NLFYLPHGLSIDTDGNYWVTDVAL------HQVFKLDPHSKEGPLLILGR 131 (329)
T ss_dssp CCEEEECTTTCCEEEEECT-----------TTCSSEEEEEECTTSCEEEEETTT------TEEEEECTTCSSCCSEEESB
T ss_pred CcEEEEECCCCeEEeccCC-----------CccCCceEEEECCCCCEEEEECCC------CEEEEEeCCCCeEEEEEecc
Confidence 4699999987765432210 001112344443 56788876532 36999998765 2222221
Q ss_pred cC---CCCCC-ceeeEEEEE--CCEEEEEccccCCCCCcCcEEEEEcCCCceEeccCCCCC----CCCCc-ccEEEEECC
Q 005043 191 KG---DIPVA-RSGHTVVRA--SSVLILFGGEDGKRRKLNDLHMFDLKSLTWLPLHCTGTG----PSPRS-NHVAALYDD 259 (717)
Q Consensus 191 ~g---~~P~~-R~~hs~~~~--~~~Lyv~GG~~~~~~~~~~v~~yD~~t~~W~~l~~~g~~----P~~R~-~~aa~~~~~ 259 (717)
.+ ..... ..-..+++. ++.||+..++. .+.+.+||+....-..+...+.. +.... -+.+++..+
T Consensus 132 ~~~~g~~~~~~~~P~~ia~~~~~g~lyv~d~~~-----~~~I~~~~~~g~~~~~~~~~g~~~~~~~~~~~~p~gia~d~~ 206 (329)
T 3fvz_A 132 SMQPGSDQNHFCQPTDVAVEPSTGAVFVSDGYC-----NSRIVQFSPSGKFVTQWGEESSGSSPRPGQFSVPHSLALVPH 206 (329)
T ss_dssp TTBCCCSTTCCSSEEEEEECTTTCCEEEEECSS-----CCEEEEECTTSCEEEEECEECCSSSCCTTEESCEEEEEEETT
T ss_pred cCCCCCCccccCCCcEEEEeCCCCeEEEEeCCC-----CCeEEEEcCCCCEEEEeccCCCCCCCCCcccCCCcEEEEECC
Confidence 00 00111 122344444 57999997521 24688999654433333211111 11111 123444433
Q ss_pred -cEEEEEcCCCCCCCCCeEEEEECCCCcEEEeecCCCCCCCCcceEEEEECCEEEEEecCCC--CCccCeEEEEECCCCc
Q 005043 260 -KNLLIFGGSSKSKTLNDLYSLDFETMIWTRIKIRGFHPSPRAGCCGVLCGTKWYIAGGGSR--KKRHAETLIFDILKGE 336 (717)
Q Consensus 260 -~~lyV~GG~~~~~~~ndv~~yd~~t~~W~~v~~~g~~P~~R~~~sav~~~~~IyV~GG~~~--~~~~~dv~~yD~~t~~ 336 (717)
+.|||....+ +.|.+||+++++....-..+ .....-.+.+...+.+|+..|... ......++++|+.+.+
T Consensus 207 ~g~l~v~d~~~-----~~I~~~~~~~G~~~~~~~~~--~~~~~~~~~~~~pg~~~~~~g~~~v~~~~~~~v~~~~~~~g~ 279 (329)
T 3fvz_A 207 LDQLCVADREN-----GRIQCFKTDTKEFVREIKHA--SFGRNVFAISYIPGFLFAVNGKPYFGDQEPVQGFVMNFSSGE 279 (329)
T ss_dssp TTEEEEEETTT-----TEEEEEETTTCCEEEEECCT--TTTTCEEEEEEETTEEEEEECCCCTTCSCCCCEEEEETTTCC
T ss_pred CCEEEEEECCC-----CEEEEEECCCCcEEEEEecc--ccCCCcceeeecCCEEEEeCCCEEeccCCCcEEEEEEcCCCe
Confidence 5688876543 46999999877665443221 122222344444577777777532 2233578999988877
Q ss_pred EEEeecCCCCCCCCCcceEEEEEEeCCCcEEEEEcCCCCCCCCeEEEEEccCC
Q 005043 337 WSVAITSPSSSVTSNKGFTLVLVQHKEKDFLVAFGGIKKEPSNQVEVLSIEKN 389 (717)
Q Consensus 337 W~~l~~~p~~~~~~r~g~s~v~v~~~~~~~I~v~GG~~~~~~n~v~vyd~~~~ 389 (717)
...... + ...... ....+++. .++.|||....+ +.|++|++...
T Consensus 280 ~~~~~~-~-~~~~~~-~p~~ia~~--~dG~lyvad~~~----~~I~~~~~~~~ 323 (329)
T 3fvz_A 280 IIDVFK-P-VRKHFD-MPHDIVAS--EDGTVYIGDAHT----NTVWKFTLTEK 323 (329)
T ss_dssp EEEEEC-C-SSSCCS-SEEEEEEC--TTSEEEEEESSS----CCEEEEEEEEC
T ss_pred EEEEEc-C-CCCccC-CeeEEEEC--CCCCEEEEECCC----CEEEEEeCCcc
Confidence 655421 1 111111 12223332 245788876543 37889988654
No 122
>4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens}
Probab=95.94 E-value=0.32 Score=50.85 Aligned_cols=237 Identities=9% Similarity=0.008 Sum_probs=110.0
Q ss_pred CCEEEEEcccCCCCCcccEEEEEcCCCceEEccccccCCCCCCCCCCCcccceEEEEE----CCEEEEEeccCCCCCCce
Q 005043 98 GNKMIVVGGESGNGLLDDVQVLNFDRFSWTAASSKLYLSPSSLPLKIPACRGHSLISW----GKKVLLVGGKTDSGSDRV 173 (717)
Q Consensus 98 ~~~lyV~GG~~~~~~~~~v~~yd~~t~~W~~l~~~~~~~~~~~~~~~p~r~~hs~v~~----~~~Iyv~GG~~~~~~~~~ 173 (717)
++.+++.|+.++ .+.+||+.+..-...... +.. ..++... ++.+++.|+.+.
T Consensus 111 ~~~~l~s~~~d~-----~i~iwd~~~~~~~~~~~~------------~~~-~~~~~~~~~~~~~~~~~~~~~~~------ 166 (408)
T 4a11_B 111 DTGMFTSSSFDK-----TLKVWDTNTLQTADVFNF------------EET-VYSHHMSPVSTKHCLVAVGTRGP------ 166 (408)
T ss_dssp CTTCEEEEETTS-----EEEEEETTTTEEEEEEEC------------SSC-EEEEEECSSCSSCCEEEEEESSS------
T ss_pred CCcEEEEEeCCC-----eEEEeeCCCCccceeccC------------CCc-eeeeEeecCCCCCcEEEEEcCCC------
Confidence 445677776543 588899888754433221 011 1122221 334677776532
Q ss_pred EEEEEECCCCcEEEeeecCCCCCCceeeEEEEE-C-CEEEEEccccCCCCCcCcEEEEEcCCCc--eEeccCC-----C-
Q 005043 174 SVWTFDTETECWSVVEAKGDIPVARSGHTVVRA-S-SVLILFGGEDGKRRKLNDLHMFDLKSLT--WLPLHCT-----G- 243 (717)
Q Consensus 174 ~v~~yD~~t~~W~~l~~~g~~P~~R~~hs~~~~-~-~~Lyv~GG~~~~~~~~~~v~~yD~~t~~--W~~l~~~-----g- 243 (717)
.+.+||+.+......-. .....-.+++.. + ..+++.|+.++ .+.+||+.+.. ...+... .
T Consensus 167 ~v~~~d~~~~~~~~~~~----~~~~~v~~~~~~~~~~~ll~~~~~dg------~i~i~d~~~~~~~~~~~~~~~~~~~~~ 236 (408)
T 4a11_B 167 KVQLCDLKSGSCSHILQ----GHRQEILAVSWSPRYDYILATASADS------RVKLWDVRRASGCLITLDQHNGKKSQA 236 (408)
T ss_dssp SEEEEESSSSCCCEEEC----CCCSCEEEEEECSSCTTEEEEEETTS------CEEEEETTCSSCCSEECCTTTTCSCCC
T ss_pred eEEEEeCCCcceeeeec----CCCCcEEEEEECCCCCcEEEEEcCCC------cEEEEECCCCCccccccccccccccee
Confidence 58889987664322110 111111223333 2 34777777554 37888886543 1111100 0
Q ss_pred ---C-CCCCCcccEEEEECCcEEEEEcCCCCCCCCCeEEEEECCCCcEEEeecCCCCCCC--CcceEEEEECCEEEEEec
Q 005043 244 ---T-GPSPRSNHVAALYDDKNLLIFGGSSKSKTLNDLYSLDFETMIWTRIKIRGFHPSP--RAGCCGVLCGTKWYIAGG 317 (717)
Q Consensus 244 ---~-~P~~R~~~aa~~~~~~~lyV~GG~~~~~~~ndv~~yd~~t~~W~~v~~~g~~P~~--R~~~sav~~~~~IyV~GG 317 (717)
. ......-.+++...+...++.|+.++ .+.+||+.+..-............ ..........+..+++++
T Consensus 237 ~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg-----~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 311 (408)
T 4a11_B 237 VESANTAHNGKVNGLCFTSDGLHLLTVGTDN-----RMRLWNSSNGENTLVNYGKVCNNSKKGLKFTVSCGCSSEFVFVP 311 (408)
T ss_dssp TTTSSCSCSSCEEEEEECTTSSEEEEEETTS-----CEEEEETTTCCBCCCCCCCCCCCCSSCCCCEECCSSSSCEEEEE
T ss_pred eccccccccCceeEEEEcCCCCEEEEecCCC-----eEEEEECCCCccceeccccccccccccceeEEecCCCceEEEEe
Confidence 0 01111112233333333666676553 489999887653222111001111 111111112233444444
Q ss_pred CCCCCccCeEEEEECCCCcEEEeecCCCCCCCCCcceEEEEEEeCCCcEEEEEcCCCCCCCCeEEEEEccCCc
Q 005043 318 GSRKKRHAETLIFDILKGEWSVAITSPSSSVTSNKGFTLVLVQHKEKDFLVAFGGIKKEPSNQVEVLSIEKNE 390 (717)
Q Consensus 318 ~~~~~~~~dv~~yD~~t~~W~~l~~~p~~~~~~r~g~s~v~v~~~~~~~I~v~GG~~~~~~n~v~vyd~~~~e 390 (717)
.+ ..+.+||+.+..-.... .. .......+.+.. ++.+++.||.++ .+.+||+.+.+
T Consensus 312 ~~-----~~i~v~d~~~~~~~~~~--~~----~~~~v~~~~~s~--~~~~l~s~~~dg----~i~iw~~~~~~ 367 (408)
T 4a11_B 312 YG-----STIAVYTVYSGEQITML--KG----HYKTVDCCVFQS--NFQELYSGSRDC----NILAWVPSLYE 367 (408)
T ss_dssp ET-----TEEEEEETTTCCEEEEE--CC----CSSCEEEEEEET--TTTEEEEEETTS----CEEEEEECC--
T ss_pred cC-----CEEEEEECcCCcceeee--cc----CCCeEEEEEEcC--CCCEEEEECCCC----eEEEEeCCCCC
Confidence 33 35889998876544332 11 111223334432 344666777654 57888887765
No 123
>1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A
Probab=95.93 E-value=1 Score=45.76 Aligned_cols=234 Identities=7% Similarity=-0.017 Sum_probs=111.8
Q ss_pred CCEEEEEcccCCCCCcccEEEEEcCCCc----eEEccccccCCCCCCCCCCCcccceEEEE-ECCE-EEEEeccCCCCCC
Q 005043 98 GNKMIVVGGESGNGLLDDVQVLNFDRFS----WTAASSKLYLSPSSLPLKIPACRGHSLIS-WGKK-VLLVGGKTDSGSD 171 (717)
Q Consensus 98 ~~~lyV~GG~~~~~~~~~v~~yd~~t~~----W~~l~~~~~~~~~~~~~~~p~r~~hs~v~-~~~~-Iyv~GG~~~~~~~ 171 (717)
++.+++.|+.+ ..+.+||+.+.. ...... ... .-.+++. -++. .++.|+.+.
T Consensus 22 ~~~~l~~~~~d-----~~v~iw~~~~~~~~~~~~~~~~------------~~~-~v~~~~~~~~~~~~l~~~~~dg---- 79 (342)
T 1yfq_A 22 SKSLLLITSWD-----GSLTVYKFDIQAKNVDLLQSLR------------YKH-PLLCCNFIDNTDLQIYVGTVQG---- 79 (342)
T ss_dssp GGTEEEEEETT-----SEEEEEEEETTTTEEEEEEEEE------------CSS-CEEEEEEEESSSEEEEEEETTS----
T ss_pred CCCEEEEEcCC-----CeEEEEEeCCCCccccceeeee------------cCC-ceEEEEECCCCCcEEEEEcCCC----
Confidence 44566666644 257888887765 222221 111 1123333 2566 777777532
Q ss_pred ceEEEEEEC-CCCcEEEeeecCCCCCCceeeEEEEECCEEEEEccccCCCCCcCcEEEEEcCCCc-------eEeccCCC
Q 005043 172 RVSVWTFDT-ETECWSVVEAKGDIPVARSGHTVVRASSVLILFGGEDGKRRKLNDLHMFDLKSLT-------WLPLHCTG 243 (717)
Q Consensus 172 ~~~v~~yD~-~t~~W~~l~~~g~~P~~R~~hs~~~~~~~Lyv~GG~~~~~~~~~~v~~yD~~t~~-------W~~l~~~g 243 (717)
.+.+||+ .+.....+.. .+....-.+++...+.+++.|+.+ ..+.+||+.+.. ...+.
T Consensus 80 --~i~~wd~~~~~~~~~~~~---~~~~~~v~~l~~~~~~~l~s~~~d------~~i~iwd~~~~~~~~~~~~~~~~~--- 145 (342)
T 1yfq_A 80 --EILKVDLIGSPSFQALTN---NEANLGICRICKYGDDKLIAASWD------GLIEVIDPRNYGDGVIAVKNLNSN--- 145 (342)
T ss_dssp --CEEEECSSSSSSEEECBS---CCCCSCEEEEEEETTTEEEEEETT------SEEEEECHHHHTTBCEEEEESCSS---
T ss_pred --eEEEEEeccCCceEeccc---cCCCCceEEEEeCCCCEEEEEcCC------CeEEEEcccccccccccccCCeee---
Confidence 5889999 8887655542 012222223333335666666644 347888876400 22222
Q ss_pred CCCCCCcccEEEEECCcEEEEEcCCCCCCCCCeEEEEECCC-Cc--EEEeecCCCCCCCCcceEEEEE--CCEEEEEecC
Q 005043 244 TGPSPRSNHVAALYDDKNLLIFGGSSKSKTLNDLYSLDFET-MI--WTRIKIRGFHPSPRAGCCGVLC--GTKWYIAGGG 318 (717)
Q Consensus 244 ~~P~~R~~~aa~~~~~~~lyV~GG~~~~~~~ndv~~yd~~t-~~--W~~v~~~g~~P~~R~~~sav~~--~~~IyV~GG~ 318 (717)
.+.....-.++....+. ++.|+.+ ..+..||+.+ .. ...... +....-.+++.. ++.+++.|+.
T Consensus 146 ~~~~~~~v~~~~~~~~~--l~~~~~d-----~~i~i~d~~~~~~~~~~~~~~----~~~~~i~~i~~~~~~~~~l~~~~~ 214 (342)
T 1yfq_A 146 NTKVKNKIFTMDTNSSR--LIVGMNN-----SQVQWFRLPLCEDDNGTIEES----GLKYQIRDVALLPKEQEGYACSSI 214 (342)
T ss_dssp SSSSCCCEEEEEECSSE--EEEEEST-----TEEEEEESSCCTTCCCEEEEC----SCSSCEEEEEECSGGGCEEEEEET
T ss_pred EEeeCCceEEEEecCCc--EEEEeCC-----CeEEEEECCccccccceeeec----CCCCceeEEEECCCCCCEEEEEec
Confidence 22222222333333343 5555543 3599999987 33 222221 112222233333 4677888876
Q ss_pred CCCCccCeEEEEECCCC--------cEEEeecCCCCCC--CCCcceEEEEEEeCCCcEEEEEcCCCCCCCCeEEEEEccC
Q 005043 319 SRKKRHAETLIFDILKG--------EWSVAITSPSSSV--TSNKGFTLVLVQHKEKDFLVAFGGIKKEPSNQVEVLSIEK 388 (717)
Q Consensus 319 ~~~~~~~dv~~yD~~t~--------~W~~l~~~p~~~~--~~r~g~s~v~v~~~~~~~I~v~GG~~~~~~n~v~vyd~~~ 388 (717)
++ .+.+||.... .... ........ ........+.+. .++.+++.|+.++ .|.+||+.+
T Consensus 215 dg-----~i~i~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~i~~~~~s--~~~~~l~~~~~dg----~i~vwd~~~ 282 (342)
T 1yfq_A 215 DG-----RVAVEFFDDQGDDYNSSKRFAF-RCHRLNLKDTNLAYPVNSIEFS--PRHKFLYTAGSDG----IISCWNLQT 282 (342)
T ss_dssp TS-----EEEEEECCTTCCSTTCTTCEEE-ECCCCCTTCCSSCCCEEEEEEC--TTTCCEEEEETTS----CEEEEETTT
T ss_pred CC-----cEEEEEEcCCCcccccccceee-ecccccccccccceeEEEEEEc--CCCCEEEEecCCc----eEEEEcCcc
Confidence 43 3556555433 2221 11000000 001122333332 2344566776543 588999877
Q ss_pred Cc
Q 005043 389 NE 390 (717)
Q Consensus 389 ~e 390 (717)
.+
T Consensus 283 ~~ 284 (342)
T 1yfq_A 283 RK 284 (342)
T ss_dssp TE
T ss_pred Hh
Confidence 65
No 124
>3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens}
Probab=95.92 E-value=0.58 Score=48.70 Aligned_cols=193 Identities=9% Similarity=0.043 Sum_probs=97.8
Q ss_pred CCEEEEEcccCCCCCcccEEEEEcCCCceEEccccccCCCCCCCCCCCcccceEEEEE-CCEEEEEeccCCCCCCceEEE
Q 005043 98 GNKMIVVGGESGNGLLDDVQVLNFDRFSWTAASSKLYLSPSSLPLKIPACRGHSLISW-GKKVLLVGGKTDSGSDRVSVW 176 (717)
Q Consensus 98 ~~~lyV~GG~~~~~~~~~v~~yd~~t~~W~~l~~~~~~~~~~~~~~~p~r~~hs~v~~-~~~Iyv~GG~~~~~~~~~~v~ 176 (717)
++++++.||.++ .+.+||..++.|...... .......-.+++.. ++..++.|+.+. .+.
T Consensus 27 ~g~~las~~~D~-----~i~iw~~~~~~~~~~~~~---------~~~h~~~v~~~~~sp~g~~l~s~s~D~------~v~ 86 (345)
T 3fm0_A 27 AGTLLASCGGDR-----RIRIWGTEGDSWICKSVL---------SEGHQRTVRKVAWSPCGNYLASASFDA------TTC 86 (345)
T ss_dssp TSSCEEEEETTS-----CEEEEEEETTEEEEEEEE---------CSSCSSCEEEEEECTTSSEEEEEETTS------CEE
T ss_pred CCCEEEEEcCCC-----eEEEEEcCCCcceeeeee---------ccccCCcEEEEEECCCCCEEEEEECCC------cEE
Confidence 566777777654 478889888877543321 00011111222222 566777777642 466
Q ss_pred EEECCCCcEEEeeecCCCCCCceeeEEEEE-CCEEEEEccccCCCCCcCcEEEEEcCCCc-eEeccCCCCCCCCCcccEE
Q 005043 177 TFDTETECWSVVEAKGDIPVARSGHTVVRA-SSVLILFGGEDGKRRKLNDLHMFDLKSLT-WLPLHCTGTGPSPRSNHVA 254 (717)
Q Consensus 177 ~yD~~t~~W~~l~~~g~~P~~R~~hs~~~~-~~~Lyv~GG~~~~~~~~~~v~~yD~~t~~-W~~l~~~g~~P~~R~~~aa 254 (717)
+||..+..+..+.... .....-.+++.. ++.+++.|+.++ .+.+||+.+.. +..+..... ....-.++
T Consensus 87 iw~~~~~~~~~~~~~~--~h~~~v~~v~~sp~~~~l~s~s~D~------~v~iwd~~~~~~~~~~~~~~~--h~~~v~~~ 156 (345)
T 3fm0_A 87 IWKKNQDDFECVTTLE--GHENEVKSVAWAPSGNLLATCSRDK------SVWVWEVDEEDEYECVSVLNS--HTQDVKHV 156 (345)
T ss_dssp EEEECCC-EEEEEEEC--CCSSCEEEEEECTTSSEEEEEETTS------CEEEEEECTTSCEEEEEEECC--CCSCEEEE
T ss_pred EEEccCCCeEEEEEcc--CCCCCceEEEEeCCCCEEEEEECCC------eEEEEECCCCCCeEEEEEecC--cCCCeEEE
Confidence 7777777665443211 111111223332 467777777653 37788876542 332221001 11111223
Q ss_pred EEECCcEEEEEcCCCCCCCCCeEEEEECCCCcEEEeecCCCCCCCCcceEEEEE-CCEEEEEecCCCCCccCeEEEEEC
Q 005043 255 ALYDDKNLLIFGGSSKSKTLNDLYSLDFETMIWTRIKIRGFHPSPRAGCCGVLC-GTKWYIAGGGSRKKRHAETLIFDI 332 (717)
Q Consensus 255 ~~~~~~~lyV~GG~~~~~~~ndv~~yd~~t~~W~~v~~~g~~P~~R~~~sav~~-~~~IyV~GG~~~~~~~~dv~~yD~ 332 (717)
+...+..+++.|+.++ .+..||..+..|..+.... .....-.+++.. +++.++.|+.++. +.+||.
T Consensus 157 ~~~p~~~~l~s~s~d~-----~i~~w~~~~~~~~~~~~~~--~h~~~v~~l~~sp~g~~l~s~s~D~~-----v~iW~~ 223 (345)
T 3fm0_A 157 VWHPSQELLASASYDD-----TVKLYREEEDDWVCCATLE--GHESTVWSLAFDPSGQRLASCSDDRT-----VRIWRQ 223 (345)
T ss_dssp EECSSSSCEEEEETTS-----CEEEEEEETTEEEEEEEEC--CCSSCEEEEEECTTSSEEEEEETTSC-----EEEEEE
T ss_pred EECCCCCEEEEEeCCC-----cEEEEEecCCCEEEEEEec--CCCCceEEEEECCCCCEEEEEeCCCe-----EEEecc
Confidence 3333333677777654 4888998888887554321 111111222222 5777788876644 555553
No 125
>1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A*
Probab=95.92 E-value=0.31 Score=55.03 Aligned_cols=194 Identities=13% Similarity=0.116 Sum_probs=98.7
Q ss_pred EEEEEECCCCcEEE-eeecCC-------CCCCceeeEEEEE-CCEEEEEccccCCCCCcCcEEEEEcCCCceEeccCCCC
Q 005043 174 SVWTFDTETECWSV-VEAKGD-------IPVARSGHTVVRA-SSVLILFGGEDGKRRKLNDLHMFDLKSLTWLPLHCTGT 244 (717)
Q Consensus 174 ~v~~yD~~t~~W~~-l~~~g~-------~P~~R~~hs~~~~-~~~Lyv~GG~~~~~~~~~~v~~yD~~t~~W~~l~~~g~ 244 (717)
.+.+||..+.+-.. ++..+. .|.+|..+.+... ++.+|+.+. ..+.++++|..+.+-..+. .
T Consensus 249 ~v~v~D~~t~~~~~~i~~~g~~~~~~~~~~~~~v~~i~~s~~~~~~~vs~~------~~g~i~vvd~~~~~~l~~~---~ 319 (543)
T 1nir_A 249 QFAIMDGETLEPKQIVSTRGMTVDTQTYHPEPRVAAIIASHEHPEFIVNVK------ETGKVLLVNYKDIDNLTVT---S 319 (543)
T ss_dssp EEEEEETTTCCEEEEEECCEECSSSCCEESCCCEEEEEECSSSSEEEEEET------TTTEEEEEECTTSSSCEEE---E
T ss_pred eEEEEeccccccceeecccCcccCccccccCCceEEEEECCCCCEEEEEEC------CCCeEEEEEecCCCcceeE---E
Confidence 58888988765332 221110 0222333333333 345555432 2357899998765422211 1
Q ss_pred CCCCCcccEEEEE-CCcEEEEEcCCCCCCCCCeEEEEECCCCcEEEeecCCCCCCCCcceEEEEE-CCEEEEEecCCCCC
Q 005043 245 GPSPRSNHVAALY-DDKNLLIFGGSSKSKTLNDLYSLDFETMIWTRIKIRGFHPSPRAGCCGVLC-GTKWYIAGGGSRKK 322 (717)
Q Consensus 245 ~P~~R~~~aa~~~-~~~~lyV~GG~~~~~~~ndv~~yd~~t~~W~~v~~~g~~P~~R~~~sav~~-~~~IyV~GG~~~~~ 322 (717)
++..+.-+..+.. +++++|+.+.. .+.|.++|+.+++-...-..+..|.+-.+...+.- ++.+|+.+....
T Consensus 320 i~~~~~~~~~~~spdg~~l~va~~~-----~~~v~v~D~~tg~l~~~i~~g~~ph~g~g~~~~~p~~g~~~~s~~~~d-- 392 (543)
T 1nir_A 320 IGAAPFLHDGGWDSSHRYFMTAANN-----SNKVAVIDSKDRRLSALVDVGKTPHPGRGANFVHPKYGPVWSTSHLGD-- 392 (543)
T ss_dssp EECCSSCCCEEECTTSCEEEEEEGG-----GTEEEEEETTTTEEEEEEECSSSBCCTTCEEEEETTTEEEEEEEBSSS--
T ss_pred eccCcCccCceECCCCCEEEEEecC-----CCeEEEEECCCCeEEEeeccCCCCCCCCCcccCCCCCccEEEeccCCC--
Confidence 1222333334444 44545555432 24689999999876554443444444333332222 377888775332
Q ss_pred ccCeEEEEECCCC-----cEEEeecCCCCCCCCCcceEEEEEEeCCCcEEEEEcCCCCC--CCCeEEEEEccCCc
Q 005043 323 RHAETLIFDILKG-----EWSVAITSPSSSVTSNKGFTLVLVQHKEKDFLVAFGGIKKE--PSNQVEVLSIEKNE 390 (717)
Q Consensus 323 ~~~dv~~yD~~t~-----~W~~l~~~p~~~~~~r~g~s~v~v~~~~~~~I~v~GG~~~~--~~n~v~vyd~~~~e 390 (717)
..|-++|..+. .|+.+...+... .+ +..+..++++..||+-.-.+.+ ..+.|.+||+.+.+
T Consensus 393 --~~V~v~d~~~~~~~~~~~~~v~~l~~~g----~~-~~~v~~~pdg~~l~v~~~~~~~~~~~~~v~v~d~~~~~ 460 (543)
T 1nir_A 393 --GSISLIGTDPKNHPQYAWKKVAELQGQG----GG-SLFIKTHPKSSHLYVDTTFNPDARISQSVAVFDLKNLD 460 (543)
T ss_dssp --SEEEEEECCTTTCTTTBTSEEEEEECSC----SC-CCCEECCTTCCEEEECCTTCSSHHHHTCEEEEETTCTT
T ss_pred --ceEEEEEeCCCCCchhcCeEEEEEEcCC----CC-ceEEEcCCCCCcEEEecCCCCCcccCceEEEEECCCCC
Confidence 35788888772 377665433221 11 1112223455666653311221 25689999998876
No 126
>1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1
Probab=95.89 E-value=1.6 Score=43.49 Aligned_cols=237 Identities=9% Similarity=0.037 Sum_probs=121.1
Q ss_pred CCEEEEEcccCCCCCcccEEEEEcCCCceEEccccccCCCCCCCCCCCcccceEEEEE--CCEEEEEeccCCCCCCceEE
Q 005043 98 GNKMIVVGGESGNGLLDDVQVLNFDRFSWTAASSKLYLSPSSLPLKIPACRGHSLISW--GKKVLLVGGKTDSGSDRVSV 175 (717)
Q Consensus 98 ~~~lyV~GG~~~~~~~~~v~~yd~~t~~W~~l~~~~~~~~~~~~~~~p~r~~hs~v~~--~~~Iyv~GG~~~~~~~~~~v 175 (717)
++.+|+.+..+ ..+.+||+.......+..... .......-++++.. ++.+|+.+... ...+
T Consensus 40 ~g~l~v~~~~~-----~~i~~~d~~g~~~~~~~~~~~-------~~~~~~~p~~i~~~~~~g~l~v~~~~~-----~~~i 102 (286)
T 1q7f_A 40 QNDIIVADTNN-----HRIQIFDKEGRFKFQFGECGK-------RDSQLLYPNRVAVVRNSGDIIVTERSP-----THQI 102 (286)
T ss_dssp TCCEEEEEGGG-----TEEEEECTTSCEEEEECCBSS-------STTCBSSEEEEEEETTTTEEEEEECGG-----GCEE
T ss_pred CCCEEEEECCC-----CEEEEECCCCcEEEEecccCC-------CcccccCceEEEEEcCCCeEEEEcCCC-----CCEE
Confidence 46688876432 358899987654433332100 00011122444542 68899886421 1368
Q ss_pred EEEECCCCcEEEeeecCCCCCCceeeEEEEE-CCEEEEEccccCCCCCcCcEEEEEcCCCceEeccCCCCCCCCCcccEE
Q 005043 176 WTFDTETECWSVVEAKGDIPVARSGHTVVRA-SSVLILFGGEDGKRRKLNDLHMFDLKSLTWLPLHCTGTGPSPRSNHVA 254 (717)
Q Consensus 176 ~~yD~~t~~W~~l~~~g~~P~~R~~hs~~~~-~~~Lyv~GG~~~~~~~~~~v~~yD~~t~~W~~l~~~g~~P~~R~~~aa 254 (717)
.+||........+.. +.....+.+++. ++.+|+.... .+.+++||+.......+...+.+.. -..+
T Consensus 103 ~~~d~~g~~~~~~~~----~~~~~~~~i~~~~~g~l~v~~~~------~~~i~~~~~~g~~~~~~~~~~~~~~---p~~i 169 (286)
T 1q7f_A 103 QIYNQYGQFVRKFGA----TILQHPRGVTVDNKGRIIVVECK------VMRVIIFDQNGNVLHKFGCSKHLEF---PNGV 169 (286)
T ss_dssp EEECTTSCEEEEECT----TTCSCEEEEEECTTSCEEEEETT------TTEEEEECTTSCEEEEEECTTTCSS---EEEE
T ss_pred EEECCCCcEEEEecC----ccCCCceEEEEeCCCCEEEEECC------CCEEEEEcCCCCEEEEeCCCCccCC---cEEE
Confidence 999965544433321 111222344443 5688887532 2468999987654444421111111 1234
Q ss_pred EEECCcEEEEEcCCCCCCCCCeEEEEECCCCcEEEeecCCCCCCCCcceEEEEE-CCEEEEEecCCCCCccCeEEEEECC
Q 005043 255 ALYDDKNLLIFGGSSKSKTLNDLYSLDFETMIWTRIKIRGFHPSPRAGCCGVLC-GTKWYIAGGGSRKKRHAETLIFDIL 333 (717)
Q Consensus 255 ~~~~~~~lyV~GG~~~~~~~ndv~~yd~~t~~W~~v~~~g~~P~~R~~~sav~~-~~~IyV~GG~~~~~~~~dv~~yD~~ 333 (717)
++..+..+|+.+.. .+.|.+||+.......+...+.. ..-.+++.. ++.+||....+. ..+.+||+.
T Consensus 170 ~~~~~g~l~v~~~~-----~~~i~~~~~~g~~~~~~~~~g~~---~~p~~i~~d~~G~l~v~~~~~~----~~i~~~~~~ 237 (286)
T 1q7f_A 170 VVNDKQEIFISDNR-----AHCVKVFNYEGQYLRQIGGEGIT---NYPIGVGINSNGEILIADNHNN----FNLTIFTQD 237 (286)
T ss_dssp EECSSSEEEEEEGG-----GTEEEEEETTCCEEEEESCTTTS---CSEEEEEECTTCCEEEEECSSS----CEEEEECTT
T ss_pred EECCCCCEEEEECC-----CCEEEEEcCCCCEEEEEccCCcc---CCCcEEEECCCCCEEEEeCCCC----EEEEEECCC
Confidence 44444458886543 24699999976655554332111 112233332 578888875432 158999987
Q ss_pred CCcEEEeecCCCCCCCCCcceEEEEEEeCCCcEEEEEcCCCCCCCCeEEEEEccC
Q 005043 334 KGEWSVAITSPSSSVTSNKGFTLVLVQHKEKDFLVAFGGIKKEPSNQVEVLSIEK 388 (717)
Q Consensus 334 t~~W~~l~~~p~~~~~~r~g~s~v~v~~~~~~~I~v~GG~~~~~~n~v~vyd~~~ 388 (717)
...-..+... .. ......+.+. .++.+|+... + +.|.+|+...
T Consensus 238 g~~~~~~~~~-~~----~~~~~~i~~~--~~g~l~vs~~-~----~~v~v~~~~~ 280 (286)
T 1q7f_A 238 GQLISALESK-VK----HAQCFDVALM--DDGSVVLASK-D----YRLYIYRYVQ 280 (286)
T ss_dssp SCEEEEEEES-SC----CSCEEEEEEE--TTTEEEEEET-T----TEEEEEECSC
T ss_pred CCEEEEEccc-CC----CCcceeEEEC--CCCcEEEECC-C----CeEEEEEccc
Confidence 6544444321 11 1111223332 2557887742 1 4788887644
No 127
>2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus}
Probab=95.88 E-value=2.1 Score=44.69 Aligned_cols=148 Identities=16% Similarity=0.125 Sum_probs=78.9
Q ss_pred CCEEEEEeccCCCCCCceEEEEEECCCCcEEEeeecCCCCCCceeeEEEEE---CCEEEEEccccCCCCCcCcEEEEEcC
Q 005043 156 GKKVLLVGGKTDSGSDRVSVWTFDTETECWSVVEAKGDIPVARSGHTVVRA---SSVLILFGGEDGKRRKLNDLHMFDLK 232 (717)
Q Consensus 156 ~~~Iyv~GG~~~~~~~~~~v~~yD~~t~~W~~l~~~g~~P~~R~~hs~~~~---~~~Lyv~GG~~~~~~~~~~v~~yD~~ 232 (717)
++..++.|+.+ ..+.+||+.+.+....-. + .... -.++... ++.+++.||.++ .+.+||+.
T Consensus 165 ~~~~l~t~s~D------~~v~lwd~~~~~~~~~~~-~--h~~~-v~~~~~~~~~~g~~l~sgs~Dg------~v~~wd~~ 228 (354)
T 2pbi_B 165 SDMQILTASGD------GTCALWDVESGQLLQSFH-G--HGAD-VLCLDLAPSETGNTFVSGGCDK------KAMVWDMR 228 (354)
T ss_dssp SSSEEEEEETT------SEEEEEETTTCCEEEEEE-C--CSSC-EEEEEECCCSSCCEEEEEETTS------CEEEEETT
T ss_pred CCCEEEEEeCC------CcEEEEeCCCCeEEEEEc-C--CCCC-eEEEEEEeCCCCCEEEEEeCCC------eEEEEECC
Confidence 34455566543 268889998876433221 1 1111 1122221 346778887654 48889998
Q ss_pred CCceEeccCCCCCCCCCcccEEEEECCcEEEEEcCCCCCCCCCeEEEEECCCCcEEEeecCCCCCCCCcceEEEEE--CC
Q 005043 233 SLTWLPLHCTGTGPSPRSNHVAALYDDKNLLIFGGSSKSKTLNDLYSLDFETMIWTRIKIRGFHPSPRAGCCGVLC--GT 310 (717)
Q Consensus 233 t~~W~~l~~~g~~P~~R~~~aa~~~~~~~lyV~GG~~~~~~~ndv~~yd~~t~~W~~v~~~g~~P~~R~~~sav~~--~~ 310 (717)
+.+....- .. ....-.+++...+..+++.|+.++ .+..||+.+..-..+-.. .........+.+ ++
T Consensus 229 ~~~~~~~~---~~-h~~~v~~v~~~p~~~~l~s~s~D~-----~v~lwd~~~~~~~~~~~~---~~~~~~~~~~~~s~~g 296 (354)
T 2pbi_B 229 SGQCVQAF---ET-HESDVNSVRYYPSGDAFASGSDDA-----TCRLYDLRADREVAIYSK---ESIIFGASSVDFSLSG 296 (354)
T ss_dssp TCCEEEEE---CC-CSSCEEEEEECTTSSEEEEEETTS-----CEEEEETTTTEEEEEECC---TTCCSCEEEEEECTTS
T ss_pred CCcEEEEe---cC-CCCCeEEEEEeCCCCEEEEEeCCC-----eEEEEECCCCcEEEEEcC---CCcccceeEEEEeCCC
Confidence 87654321 11 111122333333333677777654 488999887653332221 112223333333 57
Q ss_pred EEEEEecCCCCCccCeEEEEECCCCc
Q 005043 311 KWYIAGGGSRKKRHAETLIFDILKGE 336 (717)
Q Consensus 311 ~IyV~GG~~~~~~~~dv~~yD~~t~~ 336 (717)
.+++.|+.++ .+.+||+.+..
T Consensus 297 ~~l~~g~~d~-----~i~vwd~~~~~ 317 (354)
T 2pbi_B 297 RLLFAGYNDY-----TINVWDVLKGS 317 (354)
T ss_dssp SEEEEEETTS-----CEEEEETTTCS
T ss_pred CEEEEEECCC-----cEEEEECCCCc
Confidence 7777887654 48899987654
No 128
>3v9f_A Two-component system sensor histidine kinase/RESP regulator, hybrid (ONE-component...; beta-propeller, beta-sandwich; 3.30A {Bacteroides thetaiotaomicron}
Probab=95.88 E-value=0.41 Score=56.22 Aligned_cols=224 Identities=7% Similarity=-0.059 Sum_probs=118.7
Q ss_pred cEEEEEcCCCceEEccccccCCCCCCCCCCCcccceEEEEE-CCEEEEEeccCCCCCCceEEEEEECCCCcEEEeeecCC
Q 005043 115 DVQVLNFDRFSWTAASSKLYLSPSSLPLKIPACRGHSLISW-GKKVLLVGGKTDSGSDRVSVWTFDTETECWSVVEAKGD 193 (717)
Q Consensus 115 ~v~~yd~~t~~W~~l~~~~~~~~~~~~~~~p~r~~hs~v~~-~~~Iyv~GG~~~~~~~~~~v~~yD~~t~~W~~l~~~g~ 193 (717)
.+++||+.+..+...... ...+...-++++.. ++.|++ |... .-+++||+.+++++..... .
T Consensus 384 Gl~~~~~~~~~~~~~~~~---------~~~~~~~v~~i~~d~~g~lWi-gt~~------~Gl~~~~~~~~~~~~~~~~-~ 446 (781)
T 3v9f_A 384 GINVFENGKRVAIYNKEN---------RELLSNSVLCSLKDSEGNLWF-GTYL------GNISYYNTRLKKFQIIELE-K 446 (781)
T ss_dssp CEEEEETTEEEEECC--------------CCCSBEEEEEECTTSCEEE-EETT------EEEEEECSSSCEEEECCST-T
T ss_pred cEEEEECCCCeEEEccCC---------CCCCCcceEEEEECCCCCEEE-Eecc------CCEEEEcCCCCcEEEeccC-C
Confidence 388999988777654320 01122223444444 567776 4321 2589999999999877531 1
Q ss_pred CCCCceeeEEEEE-CCEEEEEccccCCCCCcCcEEEEEcCCCceEeccCCC--CCCCCCcccEEEEECCcEEEEEcCCCC
Q 005043 194 IPVARSGHTVVRA-SSVLILFGGEDGKRRKLNDLHMFDLKSLTWLPLHCTG--TGPSPRSNHVAALYDDKNLLIFGGSSK 270 (717)
Q Consensus 194 ~P~~R~~hs~~~~-~~~Lyv~GG~~~~~~~~~~v~~yD~~t~~W~~l~~~g--~~P~~R~~~aa~~~~~~~lyV~GG~~~ 270 (717)
++. ..-.+++.. ++.||+-. . ..+++||+.+.+|....... .++.. .-.+++.-.+..|+|. ...
T Consensus 447 ~~~-~~v~~i~~d~~g~lwigt-------~-~Gl~~~~~~~~~~~~~~~~~~~~~~~~-~i~~i~~d~~g~lWig-t~~- 514 (781)
T 3v9f_A 447 NEL-LDVRVFYEDKNKKIWIGT-------H-AGVFVIDLASKKVIHHYDTSNSQLLEN-FVRSIAQDSEGRFWIG-TFG- 514 (781)
T ss_dssp TCC-CCEEEEEECTTSEEEEEE-------T-TEEEEEESSSSSCCEEECTTTSSCSCS-CEEEEEECTTCCEEEE-ESS-
T ss_pred CCC-CeEEEEEECCCCCEEEEE-------C-CceEEEeCCCCeEEecccCcccccccc-eeEEEEEcCCCCEEEE-EcC-
Confidence 111 222233333 46888742 1 45899999999887764211 11111 1122222233336653 321
Q ss_pred CCCCCeEEEEECCCCcEEEeecCCCCCCCCcceEEEEE-CCEEEEEecCCCCCccCeE-EEEECCCCcEEEeecCCCCCC
Q 005043 271 SKTLNDLYSLDFETMIWTRIKIRGFHPSPRAGCCGVLC-GTKWYIAGGGSRKKRHAET-LIFDILKGEWSVAITSPSSSV 348 (717)
Q Consensus 271 ~~~~ndv~~yd~~t~~W~~v~~~g~~P~~R~~~sav~~-~~~IyV~GG~~~~~~~~dv-~~yD~~t~~W~~l~~~p~~~~ 348 (717)
..+++||+.++.|+.......+|... ..+++.. ++.|+|... ..+ ++||+.+.++........ .+
T Consensus 515 ----~Gl~~~~~~~~~~~~~~~~~~l~~~~-i~~i~~d~~g~lWi~T~-------~Glv~~~d~~~~~~~~~~~~~g-l~ 581 (781)
T 3v9f_A 515 ----GGVGIYTPDMQLVRKFNQYEGFCSNT-INQIYRSSKGQMWLATG-------EGLVCFPSARNFDYQVFQRKEG-LP 581 (781)
T ss_dssp ----SCEEEECTTCCEEEEECTTTTCSCSC-EEEEEECTTSCEEEEET-------TEEEEESCTTTCCCEEECGGGT-CS
T ss_pred ----CCEEEEeCCCCeEEEccCCCCCCCCe-eEEEEECCCCCEEEEEC-------CCceEEECCCCCcEEEccccCC-CC
Confidence 23899999999998876432222211 1222222 567777543 136 899999988887653211 11
Q ss_pred CCCcceEEEEEEeCCCcEEEEEcCCCCCCCCeEEEEEccCCc
Q 005043 349 TSNKGFTLVLVQHKEKDFLVAFGGIKKEPSNQVEVLSIEKNE 390 (717)
Q Consensus 349 ~~r~g~s~v~v~~~~~~~I~v~GG~~~~~~n~v~vyd~~~~e 390 (717)
... -+++ +.. .++.|++.+. . -+.+|++.+.+
T Consensus 582 ~~~-i~~i-~~d--~~g~lW~~t~-~-----Gl~~~~~~~~~ 613 (781)
T 3v9f_A 582 NTH-IRAI-SED--KNGNIWASTN-T-----GISCYITSKKC 613 (781)
T ss_dssp CCC-CCEE-EEC--SSSCEEEECS-S-----CEEEEETTTTE
T ss_pred Cce-EEEE-EEC--CCCCEEEEcC-C-----ceEEEECCCCc
Confidence 111 1222 221 2456765543 2 46777777655
No 129
>4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens}
Probab=95.87 E-value=0.48 Score=49.38 Aligned_cols=206 Identities=11% Similarity=0.105 Sum_probs=97.7
Q ss_pred CCEEEEEcccCCCCCcccEEEEEcCCCceEEccccccCCC-CCCCCCCCcccceEEEEE--CCEEEEEeccCCCCCCceE
Q 005043 98 GNKMIVVGGESGNGLLDDVQVLNFDRFSWTAASSKLYLSP-SSLPLKIPACRGHSLISW--GKKVLLVGGKTDSGSDRVS 174 (717)
Q Consensus 98 ~~~lyV~GG~~~~~~~~~v~~yd~~t~~W~~l~~~~~~~~-~~~~~~~p~r~~hs~v~~--~~~Iyv~GG~~~~~~~~~~ 174 (717)
++.+++.||.++ .+.+||+.+.............. ...........-.+++.. ++.+++.|+.+ ..
T Consensus 55 ~~~~l~~~~~dg-----~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d------~~ 123 (408)
T 4a11_B 55 EGRYMLSGGSDG-----VIVLYDLENSSRQSYYTCKAVCSIGRDHPDVHRYSVETVQWYPHDTGMFTSSSFD------KT 123 (408)
T ss_dssp TCCEEEEEETTS-----CEEEEECCCCSSSSCEEECEEEEECTTCTTCCSSCEEEEEECTTCTTCEEEEETT------SE
T ss_pred CCCEEEEEcCCC-----eEEEEECCCCcccceEeccccccccccccccCCCcEEEEEEccCCCcEEEEEeCC------Ce
Confidence 466777777653 48888888754322111000000 000000011111223322 45577777753 26
Q ss_pred EEEEECCCCcEEEeeecCCCCCCceeeEEEEE--CCEEEEEccccCCCCCcCcEEEEEcCCCceEeccCCCCCCCCCccc
Q 005043 175 VWTFDTETECWSVVEAKGDIPVARSGHTVVRA--SSVLILFGGEDGKRRKLNDLHMFDLKSLTWLPLHCTGTGPSPRSNH 252 (717)
Q Consensus 175 v~~yD~~t~~W~~l~~~g~~P~~R~~hs~~~~--~~~Lyv~GG~~~~~~~~~~v~~yD~~t~~W~~l~~~g~~P~~R~~~ 252 (717)
+.+||+.+........ .+........... ++.+++.|+.+ ..+.+||+.+..-...- .. ....-.
T Consensus 124 i~iwd~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~------~~v~~~d~~~~~~~~~~---~~-~~~~v~ 190 (408)
T 4a11_B 124 LKVWDTNTLQTADVFN---FEETVYSHHMSPVSTKHCLVAVGTRG------PKVQLCDLKSGSCSHIL---QG-HRQEIL 190 (408)
T ss_dssp EEEEETTTTEEEEEEE---CSSCEEEEEECSSCSSCCEEEEEESS------SSEEEEESSSSCCCEEE---CC-CCSCEE
T ss_pred EEEeeCCCCccceecc---CCCceeeeEeecCCCCCcEEEEEcCC------CeEEEEeCCCcceeeee---cC-CCCcEE
Confidence 8899998876554432 2222222221111 34477777654 34889998765432211 00 111122
Q ss_pred EEEEECC-cEEEEEcCCCCCCCCCeEEEEECCCCc--EEEeecCC-----C----CCCCCcceEEEEE--CCEEEEEecC
Q 005043 253 VAALYDD-KNLLIFGGSSKSKTLNDLYSLDFETMI--WTRIKIRG-----F----HPSPRAGCCGVLC--GTKWYIAGGG 318 (717)
Q Consensus 253 aa~~~~~-~~lyV~GG~~~~~~~ndv~~yd~~t~~--W~~v~~~g-----~----~P~~R~~~sav~~--~~~IyV~GG~ 318 (717)
+++...+ ..+++.|+.++ .+..||+.+.. ...+.... . ..........+.+ ++..++.|+.
T Consensus 191 ~~~~~~~~~~ll~~~~~dg-----~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~ 265 (408)
T 4a11_B 191 AVSWSPRYDYILATASADS-----RVKLWDVRRASGCLITLDQHNGKKSQAVESANTAHNGKVNGLCFTSDGLHLLTVGT 265 (408)
T ss_dssp EEEECSSCTTEEEEEETTS-----CEEEEETTCSSCCSEECCTTTTCSCCCTTTSSCSCSSCEEEEEECTTSSEEEEEET
T ss_pred EEEECCCCCcEEEEEcCCC-----cEEEEECCCCCcccccccccccccceeeccccccccCceeEEEEcCCCCEEEEecC
Confidence 2333333 33677777654 48899986543 22221100 0 0111112222233 5667777776
Q ss_pred CCCCccCeEEEEECCCCcE
Q 005043 319 SRKKRHAETLIFDILKGEW 337 (717)
Q Consensus 319 ~~~~~~~dv~~yD~~t~~W 337 (717)
++ .+.+||+.+..-
T Consensus 266 dg-----~i~vwd~~~~~~ 279 (408)
T 4a11_B 266 DN-----RMRLWNSSNGEN 279 (408)
T ss_dssp TS-----CEEEEETTTCCB
T ss_pred CC-----eEEEEECCCCcc
Confidence 54 389999987653
No 130
>1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1
Probab=95.86 E-value=0.33 Score=49.36 Aligned_cols=185 Identities=9% Similarity=0.048 Sum_probs=84.6
Q ss_pred EEEEEECC--CCcEEEeeecCCCCCCceeeEEEEE-CC-EEEEEccccCCCCCcCcEEEEEcCCCc-eEeccCCCCCCCC
Q 005043 174 SVWTFDTE--TECWSVVEAKGDIPVARSGHTVVRA-SS-VLILFGGEDGKRRKLNDLHMFDLKSLT-WLPLHCTGTGPSP 248 (717)
Q Consensus 174 ~v~~yD~~--t~~W~~l~~~g~~P~~R~~hs~~~~-~~-~Lyv~GG~~~~~~~~~~v~~yD~~t~~-W~~l~~~g~~P~~ 248 (717)
.+.+|++. ++++..+.. .+.......++.. ++ .||+.+.. -+.+.+||+.... ...+.. .+..
T Consensus 61 ~v~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~s~dg~~l~~~~~~------~~~i~~~d~~~~~~~~~~~~---~~~~ 128 (343)
T 1ri6_A 61 RVLAYRIAPDDGALTFAAE---SALPGSLTHISTDHQGQFVFVGSYN------AGNVSVTRLEDGLPVGVVDV---VEGL 128 (343)
T ss_dssp EEEEEEECTTTCCEEEEEE---EECSSCCSEEEECTTSSEEEEEETT------TTEEEEEEEETTEEEEEEEE---ECCC
T ss_pred eEEEEEecCCCCceeeccc---cccCCCCcEEEEcCCCCEEEEEecC------CCeEEEEECCCCcccccccc---ccCC
Confidence 46666655 778776543 1111122333333 34 46655431 2458888884221 222221 1111
Q ss_pred CcccEEEEE-CCcEEEEEcCCCCCCCCCeEEEEECCC-CcEEEee--cCCCCCCCCcceEEEEE-C-CEEEEEecCCCCC
Q 005043 249 RSNHVAALY-DDKNLLIFGGSSKSKTLNDLYSLDFET-MIWTRIK--IRGFHPSPRAGCCGVLC-G-TKWYIAGGGSRKK 322 (717)
Q Consensus 249 R~~~aa~~~-~~~~lyV~GG~~~~~~~ndv~~yd~~t-~~W~~v~--~~g~~P~~R~~~sav~~-~-~~IyV~GG~~~~~ 322 (717)
..-+.++.. +++.+|+.+..+ +.+.+||+.+ ..+..+. ... .+....-..++.. + ..+|+.+..+
T Consensus 129 ~~~~~~~~s~dg~~l~~~~~~~-----~~v~~~d~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~pdg~~l~~~~~~~--- 199 (343)
T 1ri6_A 129 DGCHSANISPDNRTLWVPALKQ-----DRICLFTVSDDGHLVAQDPAEVT-TVEGAGPRHMVFHPNEQYAYCVNELN--- 199 (343)
T ss_dssp TTBCCCEECTTSSEEEEEEGGG-----TEEEEEEECTTSCEEEEEEEEEE-CSTTCCEEEEEECTTSSEEEEEETTT---
T ss_pred CCceEEEECCCCCEEEEecCCC-----CEEEEEEecCCCceeeecccccc-cCCCCCcceEEECCCCCEEEEEeCCC---
Confidence 112233333 345566655222 3599999987 7666433 110 1111111122232 3 4577776433
Q ss_pred ccCeEEEEECC--CCcEEEeec---CCCCCCCCCcceEEEEEEeCCCcEEEEEcCCCCCCCCeEEEEEcc
Q 005043 323 RHAETLIFDIL--KGEWSVAIT---SPSSSVTSNKGFTLVLVQHKEKDFLVAFGGIKKEPSNQVEVLSIE 387 (717)
Q Consensus 323 ~~~dv~~yD~~--t~~W~~l~~---~p~~~~~~r~g~s~v~v~~~~~~~I~v~GG~~~~~~n~v~vyd~~ 387 (717)
..+.+||+. +..+..+.. .+... ........+.+. +++..||+.+.. .+.+.+||+.
T Consensus 200 --~~i~~~~~~~~~g~~~~~~~~~~~~~~~-~~~~~~~~i~~s-~dg~~l~v~~~~----~~~i~v~d~~ 261 (343)
T 1ri6_A 200 --SSVDVWELKDPHGNIECVQTLDMMPENF-SDTRWAADIHIT-PDGRHLYACDRT----ASLITVFSVS 261 (343)
T ss_dssp --TEEEEEESSCTTSCCEEEEEEECSCTTC-CSCCCEEEEEEC-TTSSEEEEEETT----TTEEEEEEEC
T ss_pred --CEEEEEEecCCCCcEEEEeeccccCccc-cccCCccceEEC-CCCCEEEEEecC----CCEEEEEEEc
Confidence 358888884 344433221 11110 111122233342 344567665532 2378888887
No 131
>1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1
Probab=95.82 E-value=1.7 Score=43.29 Aligned_cols=195 Identities=6% Similarity=-0.001 Sum_probs=99.6
Q ss_pred CCEEEEEeccCCCCCCceEEEEEECCCCcEEEeeecCCCCC-CceeeEEEEE--CCEEEEEccccCCCCCcCcEEEEEcC
Q 005043 156 GKKVLLVGGKTDSGSDRVSVWTFDTETECWSVVEAKGDIPV-ARSGHTVVRA--SSVLILFGGEDGKRRKLNDLHMFDLK 232 (717)
Q Consensus 156 ~~~Iyv~GG~~~~~~~~~~v~~yD~~t~~W~~l~~~g~~P~-~R~~hs~~~~--~~~Lyv~GG~~~~~~~~~~v~~yD~~ 232 (717)
++.+|+.+... ..+.+||+.......+...+..+. ...-+.+++. ++.||+.+... ...+.+||+.
T Consensus 40 ~g~l~v~~~~~------~~i~~~d~~g~~~~~~~~~~~~~~~~~~p~~i~~~~~~g~l~v~~~~~-----~~~i~~~d~~ 108 (286)
T 1q7f_A 40 QNDIIVADTNN------HRIQIFDKEGRFKFQFGECGKRDSQLLYPNRVAVVRNSGDIIVTERSP-----THQIQIYNQY 108 (286)
T ss_dssp TCCEEEEEGGG------TEEEEECTTSCEEEEECCBSSSTTCBSSEEEEEEETTTTEEEEEECGG-----GCEEEEECTT
T ss_pred CCCEEEEECCC------CEEEEECCCCcEEEEecccCCCcccccCceEEEEEcCCCeEEEEcCCC-----CCEEEEECCC
Confidence 46788876542 268999988655444432111111 1123344443 57899886321 2458899965
Q ss_pred CCceEeccCCCCCCCCCcccEEEEECCcEEEEEcCCCCCCCCCeEEEEECCCCcEEEeecCCCCCCCCcceEEEEE-CCE
Q 005043 233 SLTWLPLHCTGTGPSPRSNHVAALYDDKNLLIFGGSSKSKTLNDLYSLDFETMIWTRIKIRGFHPSPRAGCCGVLC-GTK 311 (717)
Q Consensus 233 t~~W~~l~~~g~~P~~R~~~aa~~~~~~~lyV~GG~~~~~~~ndv~~yd~~t~~W~~v~~~g~~P~~R~~~sav~~-~~~ 311 (717)
......+.. +....-..+++..+..+|+....+ +.+++||+.......+...+ ....-.+++.. +++
T Consensus 109 g~~~~~~~~----~~~~~~~~i~~~~~g~l~v~~~~~-----~~i~~~~~~g~~~~~~~~~~---~~~~p~~i~~~~~g~ 176 (286)
T 1q7f_A 109 GQFVRKFGA----TILQHPRGVTVDNKGRIIVVECKV-----MRVIIFDQNGNVLHKFGCSK---HLEFPNGVVVNDKQE 176 (286)
T ss_dssp SCEEEEECT----TTCSCEEEEEECTTSCEEEEETTT-----TEEEEECTTSCEEEEEECTT---TCSSEEEEEECSSSE
T ss_pred CcEEEEecC----ccCCCceEEEEeCCCCEEEEECCC-----CEEEEEcCCCCEEEEeCCCC---ccCCcEEEEECCCCC
Confidence 443333321 111112234443333488875432 46999998766555553211 11112233332 578
Q ss_pred EEEEecCCCCCccCeEEEEECCCCcEEEeecCCCCCCCCCcceEEEEEEeCCCcEEEEEcCCCCCCCCeEEEEEccC
Q 005043 312 WYIAGGGSRKKRHAETLIFDILKGEWSVAITSPSSSVTSNKGFTLVLVQHKEKDFLVAFGGIKKEPSNQVEVLSIEK 388 (717)
Q Consensus 312 IyV~GG~~~~~~~~dv~~yD~~t~~W~~l~~~p~~~~~~r~g~s~v~v~~~~~~~I~v~GG~~~~~~n~v~vyd~~~ 388 (717)
+|+.+..+ ..|++||+.......+.. ... ......+++. .++.||+....++ ..|.+||+..
T Consensus 177 l~v~~~~~-----~~i~~~~~~g~~~~~~~~-~g~----~~~p~~i~~d--~~G~l~v~~~~~~---~~i~~~~~~g 238 (286)
T 1q7f_A 177 IFISDNRA-----HCVKVFNYEGQYLRQIGG-EGI----TNYPIGVGIN--SNGEILIADNHNN---FNLTIFTQDG 238 (286)
T ss_dssp EEEEEGGG-----TEEEEEETTCCEEEEESC-TTT----SCSEEEEEEC--TTCCEEEEECSSS---CEEEEECTTS
T ss_pred EEEEECCC-----CEEEEEcCCCCEEEEEcc-CCc----cCCCcEEEEC--CCCCEEEEeCCCC---EEEEEECCCC
Confidence 99877533 459999987665444431 100 0111223332 2446777664322 1688888654
No 132
>2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A
Probab=95.79 E-value=0.91 Score=47.99 Aligned_cols=200 Identities=13% Similarity=0.099 Sum_probs=99.8
Q ss_pred CCEEEEEeccCCCCCCceEEEEEECCCCcEEE-----eeecCCCCCCceeeEEEEE-CC-EEEEEccccCCCCCcCcEEE
Q 005043 156 GKKVLLVGGKTDSGSDRVSVWTFDTETECWSV-----VEAKGDIPVARSGHTVVRA-SS-VLILFGGEDGKRRKLNDLHM 228 (717)
Q Consensus 156 ~~~Iyv~GG~~~~~~~~~~v~~yD~~t~~W~~-----l~~~g~~P~~R~~hs~~~~-~~-~Lyv~GG~~~~~~~~~~v~~ 228 (717)
++.+++.|+.+ ..+.+||+.++.+.. +... ......-.+++.. ++ .+++.|+.++ .+.+
T Consensus 93 ~~~~l~s~s~d------g~v~vw~~~~~~~~~~~~~~~~~~--~~h~~~v~~~~~~p~~~~~l~s~~~dg------~i~i 158 (402)
T 2aq5_A 93 NDNVIASGSED------CTVMVWEIPDGGLVLPLREPVITL--EGHTKRVGIVAWHPTAQNVLLSAGCDN------VILV 158 (402)
T ss_dssp CTTEEEEEETT------SEEEEEECCTTCCSSCBCSCSEEE--ECCSSCEEEEEECSSBTTEEEEEETTS------CEEE
T ss_pred CCCEEEEEeCC------CeEEEEEccCCCCccccCCceEEe--cCCCCeEEEEEECcCCCCEEEEEcCCC------EEEE
Confidence 56788888754 258888888764311 0000 0011112233333 23 5777777543 4889
Q ss_pred EEcCCCceEeccCCCCCCCCCcccEEEEECCcEEEEEcCCCCCCCCCeEEEEECCCCcEEEeecCCCCCCCCcceEEEEE
Q 005043 229 FDLKSLTWLPLHCTGTGPSPRSNHVAALYDDKNLLIFGGSSKSKTLNDLYSLDFETMIWTRIKIRGFHPSPRAGCCGVLC 308 (717)
Q Consensus 229 yD~~t~~W~~l~~~g~~P~~R~~~aa~~~~~~~lyV~GG~~~~~~~ndv~~yd~~t~~W~~v~~~g~~P~~R~~~sav~~ 308 (717)
||+.+.+....-. .......-.+++...+..+++.|+.+ ..+.+||+.+..-...-..+ ....+....+..-
T Consensus 159 wd~~~~~~~~~~~--~~~~~~~v~~~~~~~~~~~l~~~~~d-----~~i~iwd~~~~~~~~~~~~~-~~~~~~~~~~~~~ 230 (402)
T 2aq5_A 159 WDVGTGAAVLTLG--PDVHPDTIYSVDWSRDGALICTSCRD-----KRVRVIEPRKGTVVAEKDRP-HEGTRPVHAVFVS 230 (402)
T ss_dssp EETTTTEEEEEEC--TTTCCSCEEEEEECTTSSCEEEEETT-----SEEEEEETTTTEEEEEEECS-SCSSSCCEEEECS
T ss_pred EECCCCCccEEEe--cCCCCCceEEEEECCCCCEEEEEecC-----CcEEEEeCCCCceeeeeccC-CCCCcceEEEEcC
Confidence 9998876543210 01112222233333333366667654 35999999887654332111 1111122222223
Q ss_pred CCEEEEEecCCCCCccCeEEEEECCCCcE--EEeecCCCCCCCCCcceEEEEEEeCCCcEEEEEcCCCCCCCCeEEEEEc
Q 005043 309 GTKWYIAGGGSRKKRHAETLIFDILKGEW--SVAITSPSSSVTSNKGFTLVLVQHKEKDFLVAFGGIKKEPSNQVEVLSI 386 (717)
Q Consensus 309 ~~~IyV~GG~~~~~~~~dv~~yD~~t~~W--~~l~~~p~~~~~~r~g~s~v~v~~~~~~~I~v~GG~~~~~~n~v~vyd~ 386 (717)
++++++.|.... ....+.+||+.+..- .... .. ...+...+.+. +++..|++.|+.++ .|.+||+
T Consensus 231 ~~~~l~~g~~~~--~d~~i~iwd~~~~~~~~~~~~-~~-----~~~~v~~~~~s-~~~~~l~~~g~~dg----~i~i~d~ 297 (402)
T 2aq5_A 231 EGKILTTGFSRM--SERQVALWDTKHLEEPLSLQE-LD-----TSSGVLLPFFD-PDTNIVYLCGKGDS----SIRYFEI 297 (402)
T ss_dssp TTEEEEEEECTT--CCEEEEEEETTBCSSCSEEEE-CC-----CCSSCEEEEEE-TTTTEEEEEETTCS----CEEEEEE
T ss_pred CCcEEEEeccCC--CCceEEEEcCccccCCceEEe-cc-----CCCceeEEEEc-CCCCEEEEEEcCCC----eEEEEEe
Confidence 678777773111 124688999876432 1111 01 11122333333 34556666775433 6888888
Q ss_pred cCCc
Q 005043 387 EKNE 390 (717)
Q Consensus 387 ~~~e 390 (717)
.+.+
T Consensus 298 ~~~~ 301 (402)
T 2aq5_A 298 TSEA 301 (402)
T ss_dssp CSST
T ss_pred cCCC
Confidence 7665
No 133
>3dr2_A Exported gluconolactonase; gluconolactonase SMP-30, six-bladed-propeller dimer, vitamin C, hydrolase; 1.67A {Xanthomonas campestris PV}
Probab=95.76 E-value=0.88 Score=46.46 Aligned_cols=203 Identities=6% Similarity=-0.046 Sum_probs=100.7
Q ss_pred CCEEEEEcccCCCCCcccEEEEEcCCCceEEccccccCCCCCCCCCCCcccceEEEEE-CCEEEEEeccCCCCCCceEEE
Q 005043 98 GNKMIVVGGESGNGLLDDVQVLNFDRFSWTAASSKLYLSPSSLPLKIPACRGHSLISW-GKKVLLVGGKTDSGSDRVSVW 176 (717)
Q Consensus 98 ~~~lyV~GG~~~~~~~~~v~~yd~~t~~W~~l~~~~~~~~~~~~~~~p~r~~hs~v~~-~~~Iyv~GG~~~~~~~~~~v~ 176 (717)
++.||+.+-.. +.+++|++. ......... .....+++.. ++++|+.... ...+.
T Consensus 56 g~~l~~~d~~~-----~~i~~~~~~-g~~~~~~~~-------------~~~~~gl~~d~dG~l~v~~~~------~~~v~ 110 (305)
T 3dr2_A 56 QRTLVWSDLVG-----RRVLGWRED-GTVDVLLDA-------------TAFTNGNAVDAQQRLVHCEHG------RRAIT 110 (305)
T ss_dssp GTEEEEEETTT-----TEEEEEETT-SCEEEEEES-------------CSCEEEEEECTTSCEEEEETT------TTEEE
T ss_pred CCEEEEEECCC-----CEEEEEeCC-CCEEEEeCC-------------CCccceeeECCCCCEEEEECC------CCEEE
Confidence 35577776432 358899984 444433320 1112333333 5677776321 12588
Q ss_pred EEECCCCcEEEeeecC-CCCCCceeeEEEE-ECCEEEEE----ccccC-------CCCCcCcEEEEEcCCCceEeccCCC
Q 005043 177 TFDTETECWSVVEAKG-DIPVARSGHTVVR-ASSVLILF----GGEDG-------KRRKLNDLHMFDLKSLTWLPLHCTG 243 (717)
Q Consensus 177 ~yD~~t~~W~~l~~~g-~~P~~R~~hs~~~-~~~~Lyv~----GG~~~-------~~~~~~~v~~yD~~t~~W~~l~~~g 243 (717)
+||+. ++.+.+.... ..+..+ -..+++ -++.||+. |-... .......+++||+.+.+++.+.
T Consensus 111 ~~~~~-g~~~~~~~~~~~~~~~~-~~~i~~d~dG~l~~td~~~g~~~~~~~~~~~~~~~~~~v~~~d~~~g~~~~~~--- 185 (305)
T 3dr2_A 111 RSDAD-GQAHLLVGRYAGKRLNS-PNDLIVARDGAIWFTDPPFGLRKPSQGCPADPELAHHSVYRLPPDGSPLQRMA--- 185 (305)
T ss_dssp EECTT-SCEEEEECEETTEECSC-CCCEEECTTSCEEEECCSGGGSCGGGSCCCCCSSSCEEEEEECSSSCCCEEEE---
T ss_pred EECCC-CCEEEEEeccCCCccCC-CCCEEECCCCCEEEeCcCCCccccccccccccccCCCeEEEEcCCCCcEEEEe---
Confidence 99986 6666554211 111111 122333 35788885 43210 0011357999999888877653
Q ss_pred CCCCCCcccEEEEE-CCcEEEEEcCCCCCCCCCeEEEEECCCCcEEEeecCCCCCCCCcceEEEE-ECCEEEEEecCCCC
Q 005043 244 TGPSPRSNHVAALY-DDKNLLIFGGSSKSKTLNDLYSLDFETMIWTRIKIRGFHPSPRAGCCGVL-CGTKWYIAGGGSRK 321 (717)
Q Consensus 244 ~~P~~R~~~aa~~~-~~~~lyV~GG~~~~~~~ndv~~yd~~t~~W~~v~~~g~~P~~R~~~sav~-~~~~IyV~GG~~~~ 321 (717)
.+.. -...+.. +++.||+..........+.|++|++..............+... -.+++. -++.||+..+
T Consensus 186 ~~~~---p~gl~~spdg~~lyv~~~~~~~~~~~~i~~~~~~~~~l~~~~~~~~~~~~~-pdgi~~d~~G~lwv~~~---- 257 (305)
T 3dr2_A 186 DLDH---PNGLAFSPDEQTLYVSQTPEQGHGSVEITAFAWRDGALHDRRHFASVPDGL-PDGFCVDRGGWLWSSSG---- 257 (305)
T ss_dssp EESS---EEEEEECTTSSEEEEEECCC---CCCEEEEEEEETTEEEEEEEEECCSSSC-CCSEEECTTSCEEECCS----
T ss_pred cCCC---CcceEEcCCCCEEEEEecCCcCCCCCEEEEEEecCCCccCCeEEEECCCCC-CCeEEECCCCCEEEecC----
Confidence 1111 1233343 3445777654321112357999998765432211110011111 112333 2567887652
Q ss_pred CccCeEEEEECCCCcEEEee
Q 005043 322 KRHAETLIFDILKGEWSVAI 341 (717)
Q Consensus 322 ~~~~dv~~yD~~t~~W~~l~ 341 (717)
..|++||+.......+.
T Consensus 258 ---~gv~~~~~~g~~~~~~~ 274 (305)
T 3dr2_A 258 ---TGVCVFDSDGQLLGHIP 274 (305)
T ss_dssp ---SEEEEECTTSCEEEEEE
T ss_pred ---CcEEEECCCCCEEEEEE
Confidence 24999999777666554
No 134
>3azo_A Aminopeptidase; POP family, hydrolase; 2.00A {Streptomyces morookaensis} PDB: 3azp_A 3azq_A
Probab=95.74 E-value=0.47 Score=54.04 Aligned_cols=204 Identities=12% Similarity=-0.062 Sum_probs=103.5
Q ss_pred ccEEEEEcC--C-CceEEccccccCCCCCCCCCCCcccceEEEEECCEEEEEeccCC----CCCCceEEEEEECCC----
Q 005043 114 DDVQVLNFD--R-FSWTAASSKLYLSPSSLPLKIPACRGHSLISWGKKVLLVGGKTD----SGSDRVSVWTFDTET---- 182 (717)
Q Consensus 114 ~~v~~yd~~--t-~~W~~l~~~~~~~~~~~~~~~p~r~~hs~v~~~~~Iyv~GG~~~----~~~~~~~v~~yD~~t---- 182 (717)
..+|.+++. + .....+..... .....+....+..-+++.++++.... ......+++++|+.+
T Consensus 102 ~~l~~~~~~~~g~~~~~~l~~~~~-------~~~~~~~~~~~~spDg~~l~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~ 174 (662)
T 3azo_A 102 QRLYAFEPDAPGGAVPRPLTPVSA-------VGGGLRWADPVLLPERGEVWCMAEEFTGEGPSDVRRFLAAVPLDGSAAA 174 (662)
T ss_dssp CCEEEECTTSTTCCCCEECSCCCC-------STTCEEEEEEEEETTTTEEEEEEEEECSSSTTCEEEEEEEEETTSTTTT
T ss_pred CeEEEEcCCCCCCCCCEeccCCcc-------CCCCccccCcEECCCCCEEEEEEecccCCCCCCceeEEEEEECCCCccc
Confidence 468999887 4 55555554100 00111111122222454444444321 112235799999988
Q ss_pred --CcEEEee-ecCCCCCCceeeEEEE-ECCEEEEEccccCCCC--CcCcEEEEEcC-CC---ceEeccCCCCCCCCCccc
Q 005043 183 --ECWSVVE-AKGDIPVARSGHTVVR-ASSVLILFGGEDGKRR--KLNDLHMFDLK-SL---TWLPLHCTGTGPSPRSNH 252 (717)
Q Consensus 183 --~~W~~l~-~~g~~P~~R~~hs~~~-~~~~Lyv~GG~~~~~~--~~~~v~~yD~~-t~---~W~~l~~~g~~P~~R~~~ 252 (717)
.....+. . ........+. -+++.+++...+.... ....++++|+. +. ....+.. .. .....
T Consensus 175 ~~~~~~~l~~~-----~~~~~~~~~~SpDG~~la~~~~~~~~~~~~~~~i~~~d~~~~g~~~~~~~l~~---~~-~~~~~ 245 (662)
T 3azo_A 175 DRSAVRELSDD-----AHRFVTGPRLSPDGRQAVWLAWDHPRMPWEGTELKTARVTEDGRFADTRTLLG---GP-EEAIA 245 (662)
T ss_dssp CGGGSEESSCS-----CSSEECCCEECTTSSEEEEEEECTTCCTTTCEEEEEEEECTTSCEEEEEEEEE---ET-TBCEE
T ss_pred cCCceeEEEec-----CCCcccCceECCCCCEEEEEECCCCCCCCCCcEEEEEEECCCCcccccEEeCC---CC-CceEc
Confidence 6665553 2 1111122222 2455455544333211 12579999998 56 4444421 00 11122
Q ss_pred EEEEE-CCcEEEEEcCCCCCCCCCeEEEEECCCCcEEEeecCCC---CCCCCc-ceEEEEE-CCEEEEEecCCCCCccCe
Q 005043 253 VAALY-DDKNLLIFGGSSKSKTLNDLYSLDFETMIWTRIKIRGF---HPSPRA-GCCGVLC-GTKWYIAGGGSRKKRHAE 326 (717)
Q Consensus 253 aa~~~-~~~~lyV~GG~~~~~~~ndv~~yd~~t~~W~~v~~~g~---~P~~R~-~~sav~~-~~~IyV~GG~~~~~~~~d 326 (717)
..+.. +++ +|+.+..++ ...+|++|+.++.|..+..... .|.... ....+.. ++++++.+.. + ...
T Consensus 246 ~~~~spdg~-l~~~~~~~~---~~~l~~~~~~~~~~~~l~~~~~~~~~p~w~~~~~~~~~~~~~~~~~~~~~-~---~~~ 317 (662)
T 3azo_A 246 QAEWAPDGS-LIVATDRTG---WWNLHRVDPATGAATQLCRREEEFAGPLWTPGMRWFAPLANGLIAVVHGK-G---AAV 317 (662)
T ss_dssp EEEECTTSC-EEEEECTTS---SCEEEEECTTTCCEEESSCCSSBSSCCCCSTTCCSEEECTTSCEEEEEBS-S---SCE
T ss_pred ceEECCCCe-EEEEECCCC---CeEEEEEECCCCceeecccccccccCccccccCceEeEeCCCEEEEEEEc-C---ccE
Confidence 33333 455 777665442 2479999998999988754211 011111 1123333 6777777754 2 367
Q ss_pred EEEEECCCCcEEEee
Q 005043 327 TLIFDILKGEWSVAI 341 (717)
Q Consensus 327 v~~yD~~t~~W~~l~ 341 (717)
+|.+|+.+...+.+.
T Consensus 318 l~~~d~~~~~~~~l~ 332 (662)
T 3azo_A 318 LGILDPESGELVDAA 332 (662)
T ss_dssp EEEEETTTTEEEECC
T ss_pred EEEEECCCCcEEEec
Confidence 899999888877654
No 135
>2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A
Probab=95.74 E-value=1.5 Score=44.35 Aligned_cols=240 Identities=10% Similarity=0.089 Sum_probs=110.8
Q ss_pred CCEEEEEcccCCCCCcccEEEEEcCCCceEEccccccCCCCCCCCCCCcccceEEEEE---CCEEEEEeccCCCCCCceE
Q 005043 98 GNKMIVVGGESGNGLLDDVQVLNFDRFSWTAASSKLYLSPSSLPLKIPACRGHSLISW---GKKVLLVGGKTDSGSDRVS 174 (717)
Q Consensus 98 ~~~lyV~GG~~~~~~~~~v~~yd~~t~~W~~l~~~~~~~~~~~~~~~p~r~~hs~v~~---~~~Iyv~GG~~~~~~~~~~ 174 (717)
+++.++.||.++ .+.+||+.+.....+... ......-.+++.. ++.+++.|+.+. .
T Consensus 20 ~g~~las~s~D~-----~v~iw~~~~~~~~~~~~l----------~gH~~~V~~v~~s~~~~g~~l~s~s~D~------~ 78 (297)
T 2pm7_B 20 YGKRMATCSSDK-----TIKIFEVEGETHKLIDTL----------TGHEGPVWRVDWAHPKFGTILASCSYDG------K 78 (297)
T ss_dssp TSSEEEEEETTS-----CEEEEEBCSSCBCCCEEE----------CCCSSCEEEEEECCGGGCSEEEEEETTT------E
T ss_pred CCCEEEEEeCCC-----EEEEEecCCCCcEEEEEE----------ccccCCeEEEEecCCCcCCEEEEEcCCC------E
Confidence 456677777553 478888865433222221 0111111222222 256777777642 6
Q ss_pred EEEEECCCCcEEEeeecCCCCCCceeeEEEEEC---CEEEEEccccCCCCCcCcEEEEEcCCCc-eEeccCCCCCCCCCc
Q 005043 175 VWTFDTETECWSVVEAKGDIPVARSGHTVVRAS---SVLILFGGEDGKRRKLNDLHMFDLKSLT-WLPLHCTGTGPSPRS 250 (717)
Q Consensus 175 v~~yD~~t~~W~~l~~~g~~P~~R~~hs~~~~~---~~Lyv~GG~~~~~~~~~~v~~yD~~t~~-W~~l~~~g~~P~~R~ 250 (717)
+.+||+.+..|..+..... ....-.+++... +.+++.|+.++ .+.+||+.+.. +......+ ....
T Consensus 79 v~iWd~~~~~~~~~~~~~~--h~~~v~~v~~~p~~~g~~l~s~s~d~------~v~~wd~~~~~~~~~~~~~~---h~~~ 147 (297)
T 2pm7_B 79 VMIWKEENGRWSQIAVHAV--HSASVNSVQWAPHEYGPMLLVASSDG------KVSVVEFKENGTTSPIIIDA---HAIG 147 (297)
T ss_dssp EEEEEBSSSCBCCCEEECC--CSSCEEEEEECCGGGCSEEEEEETTS------EEEEEEBCSSSCBCCEEEEC---CSSC
T ss_pred EEEEEcCCCceEEEEEeec--CCCceeEEEeCcCCCCcEEEEEECCC------cEEEEEecCCCceeeeeeec---ccCc
Confidence 8888988877754432110 111112233322 45667776543 46777776542 21110000 0000
Q ss_pred ccEEEEEC--------------CcEEEEEcCCCCCCCCCeEEEEECCCC--cEEEeecCCCCCCCCcceEEEEE--C---
Q 005043 251 NHVAALYD--------------DKNLLIFGGSSKSKTLNDLYSLDFETM--IWTRIKIRGFHPSPRAGCCGVLC--G--- 309 (717)
Q Consensus 251 ~~aa~~~~--------------~~~lyV~GG~~~~~~~ndv~~yd~~t~--~W~~v~~~g~~P~~R~~~sav~~--~--- 309 (717)
-.++.... ++ +++.|+.++ .|..||+.+. .|..+... .........+.+ +
T Consensus 148 v~~~~~~p~~~~~~~~~~~~~~~~-~l~sgs~D~-----~v~lwd~~~~~~~~~~~~~l---~~H~~~V~~v~~sp~~~~ 218 (297)
T 2pm7_B 148 VNSASWAPATIEEDGEHNGTKESR-KFVTGGADN-----LVKIWKYNSDAQTYVLESTL---EGHSDWVRDVAWSPTVLL 218 (297)
T ss_dssp EEEEEECCCC------------CC-EEEEEETTS-----CEEEEEEETTTTEEEEEEEE---CCCSSCEEEEEECCCCSS
T ss_pred cceEeecCCcccccccCCCCCCcc-eEEEEcCCC-----cEEEEEEcCCCceEEEEEEe---cCCCCceEEEEECCCCCC
Confidence 11111111 23 677777654 3777776543 35544332 111112222332 2
Q ss_pred CEEEEEecCCCCCccCeEEEEECCC--CcEEEeecCCCCCCCCCcceEEEEEEeCCCcEEEEEcCCCCCCCCeEEEEEcc
Q 005043 310 TKWYIAGGGSRKKRHAETLIFDILK--GEWSVAITSPSSSVTSNKGFTLVLVQHKEKDFLVAFGGIKKEPSNQVEVLSIE 387 (717)
Q Consensus 310 ~~IyV~GG~~~~~~~~dv~~yD~~t--~~W~~l~~~p~~~~~~r~g~s~v~v~~~~~~~I~v~GG~~~~~~n~v~vyd~~ 387 (717)
+.+++.|+.++. +.+||+.+ ..|......... .......+.+.. ++.+++.||.++ .|.+|+..
T Consensus 219 ~~~las~s~D~~-----v~iWd~~~~~~~~~~~~~~~~~---~~~~v~~~~~s~--~g~~las~~~D~----~v~lw~~~ 284 (297)
T 2pm7_B 219 RSYMASVSQDRT-----CIIWTQDNEQGPWKKTLLKEEK---FPDVLWRASWSL--SGNVLALSGGDN----KVTLWKEN 284 (297)
T ss_dssp SEEEEEEETTSC-----EEEEEESSTTSCCEEEESSSSC---CSSCEEEEEECS--SSCCEEEEETTS----CEEEEEEC
T ss_pred ceEEEEEECCCc-----EEEEEeCCCCCccceeeeeccc---CCCcEEEEEECC--CCCEEEEEcCCC----cEEEEEEC
Confidence 477888876644 77788765 346542210000 111122233322 445667777644 46666655
Q ss_pred C-Cccc
Q 005043 388 K-NESS 392 (717)
Q Consensus 388 ~-~eW~ 392 (717)
. ..|.
T Consensus 285 ~~g~w~ 290 (297)
T 2pm7_B 285 LEGKWE 290 (297)
T ss_dssp TTSCEE
T ss_pred CCCcEE
Confidence 3 3443
No 136
>4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens}
Probab=95.69 E-value=0.39 Score=50.53 Aligned_cols=199 Identities=12% Similarity=0.039 Sum_probs=95.1
Q ss_pred EEEECCEEEEEeccCCCCCCceEEEEEECCCCcEEEeeecCCCCCCceeeEEEEE-CCEEEEEccccCCCCCcCcEEEEE
Q 005043 152 LISWGKKVLLVGGKTDSGSDRVSVWTFDTETECWSVVEAKGDIPVARSGHTVVRA-SSVLILFGGEDGKRRKLNDLHMFD 230 (717)
Q Consensus 152 ~v~~~~~Iyv~GG~~~~~~~~~~v~~yD~~t~~W~~l~~~g~~P~~R~~hs~~~~-~~~Lyv~GG~~~~~~~~~~v~~yD 230 (717)
++...+..++.|+.+ ..|.+||+.++.-..............-.+++.. ++..++.|+.++ .+.+||
T Consensus 88 ~~~s~d~~l~~~s~d------g~v~lWd~~~~~~~~~~~~~~~~H~~~V~~v~~spdg~~l~sgs~d~------~i~iwd 155 (344)
T 4gqb_B 88 LTWVGERGILVASDS------GAVELWELDENETLIVSKFCKYEHDDIVSTVSVLSSGTQAVSGSKDI------CIKVWD 155 (344)
T ss_dssp EEEETTTEEEEEETT------SEEEEEEECTTSSCEEEEEEEECCSSCEEEEEECTTSSEEEEEETTS------CEEEEE
T ss_pred EEEeCCCeEEEEECC------CEEEEEeccCCCceeEeeccccCCCCCEEEEEECCCCCEEEEEeCCC------eEEEEE
Confidence 333444455666643 2578888877642211100000011111223332 567777777554 488899
Q ss_pred cCCCceEeccCCCCCCCCCcccEEEEE-CCcEEEEEcCCCCCCCCCeEEEEECCCCcEEEeecCCCCCCCCcceEEEEE-
Q 005043 231 LKSLTWLPLHCTGTGPSPRSNHVAALY-DDKNLLIFGGSSKSKTLNDLYSLDFETMIWTRIKIRGFHPSPRAGCCGVLC- 308 (717)
Q Consensus 231 ~~t~~W~~l~~~g~~P~~R~~~aa~~~-~~~~lyV~GG~~~~~~~ndv~~yd~~t~~W~~v~~~g~~P~~R~~~sav~~- 308 (717)
+.+++-...- ...... -.+++.. ++..+++.|+.++ .|.+||+.+..-...-.. ........++.+
T Consensus 156 ~~~~~~~~~~---~~h~~~-V~~~~~~~~~~~~l~s~s~D~-----~v~iwd~~~~~~~~~~~~---~~~~~~~~~~~~~ 223 (344)
T 4gqb_B 156 LAQQVVLSSY---RAHAAQ-VTCVAASPHKDSVFLSCSEDN-----RILLWDTRCPKPASQIGC---SAPGYLPTSLAWH 223 (344)
T ss_dssp TTTTEEEEEE---CCCSSC-EEEEEECSSCTTEEEEEETTS-----CEEEEETTSSSCEEECC-------CCCEEEEEEC
T ss_pred CCCCcEEEEE---cCcCCc-eEEEEecCCCCCceeeecccc-----ccccccccccceeeeeec---ceeeccceeeeec
Confidence 9876533221 111111 1122222 3334777777654 488999987654332111 111111222222
Q ss_pred --CCEEEEEecCCCCCccCeEEEEECCCCcEEEeecCCCCCCCCCcceEEEEEEeCCCcEEEEEcCCCCCCCCeEEEEEc
Q 005043 309 --GTKWYIAGGGSRKKRHAETLIFDILKGEWSVAITSPSSSVTSNKGFTLVLVQHKEKDFLVAFGGIKKEPSNQVEVLSI 386 (717)
Q Consensus 309 --~~~IyV~GG~~~~~~~~dv~~yD~~t~~W~~l~~~p~~~~~~r~g~s~v~v~~~~~~~I~v~GG~~~~~~n~v~vyd~ 386 (717)
++++++.|+.++ .|.+||+.+.+-.... .. .......+.+. +++..+++.|+.++ .|.+||.
T Consensus 224 p~~~~~l~sg~~dg-----~v~~wd~~~~~~~~~~--~~----h~~~v~~v~fs-p~g~~~lasgs~D~----~i~vwd~ 287 (344)
T 4gqb_B 224 PQQSEVFVFGDENG-----TVSLVDTKSTSCVLSS--AV----HSQCVTGLVFS-PHSVPFLASLSEDC----SLAVLDS 287 (344)
T ss_dssp SSCTTEEEEEETTS-----EEEEEESCC--CCEEE--EC----CSSCEEEEEEC-SSSSCCEEEEETTS----CEEEECT
T ss_pred CCCCcceEEeccCC-----cEEEEECCCCcEEEEE--cC----CCCCEEEEEEc-cCCCeEEEEEeCCC----eEEEEEC
Confidence 567888887654 4889998765421111 11 11122333442 23345666777653 4677777
Q ss_pred cCCc
Q 005043 387 EKNE 390 (717)
Q Consensus 387 ~~~e 390 (717)
.+.+
T Consensus 288 ~~~~ 291 (344)
T 4gqb_B 288 SLSE 291 (344)
T ss_dssp TCCE
T ss_pred CCCc
Confidence 6654
No 137
>3pe7_A Oligogalacturonate lyase; seven-bladed beta-propeller; 1.65A {Yersinia enterocolitica subsp}
Probab=95.66 E-value=1.2 Score=46.41 Aligned_cols=199 Identities=10% Similarity=-0.031 Sum_probs=97.9
Q ss_pred ccEEEEEcCCCceEEccccccCCCCCCCCCCCcccceEEEEECCEEEEEeccCCCCCCceEEEEEECCCCcEEEeeecCC
Q 005043 114 DDVQVLNFDRFSWTAASSKLYLSPSSLPLKIPACRGHSLISWGKKVLLVGGKTDSGSDRVSVWTFDTETECWSVVEAKGD 193 (717)
Q Consensus 114 ~~v~~yd~~t~~W~~l~~~~~~~~~~~~~~~p~r~~hs~v~~~~~Iyv~GG~~~~~~~~~~v~~yD~~t~~W~~l~~~g~ 193 (717)
..+|++|+.+..-..+... +...... ....-+++.++++... ..++++|+.+..-..+..
T Consensus 60 ~~l~~~d~~~g~~~~lt~~----------~~~~~~~-~~~spdg~~l~~~~~~------~~l~~~d~~~g~~~~~~~--- 119 (388)
T 3pe7_A 60 WNYYLLDLNTQVATQLTEG----------RGDNTFG-GFLSPDDDALFYVKDG------RNLMRVDLATLEENVVYQ--- 119 (388)
T ss_dssp CEEEEEETTTCEEEECCCS----------SCBCSSS-CEECTTSSEEEEEETT------TEEEEEETTTCCEEEEEE---
T ss_pred ceEEEEeCCCCceEEeeeC----------CCCCccc-eEEcCCCCEEEEEeCC------CeEEEEECCCCcceeeee---
Confidence 3689999999887777642 1111111 1222244433343321 279999999987665543
Q ss_pred CCCCceeeEEEE--ECCEEEEEcccc-C---------------CCCCcCcEEEEEcCCCceEeccCCCCCCCCCcccEEE
Q 005043 194 IPVARSGHTVVR--ASSVLILFGGED-G---------------KRRKLNDLHMFDLKSLTWLPLHCTGTGPSPRSNHVAA 255 (717)
Q Consensus 194 ~P~~R~~hs~~~--~~~~Lyv~GG~~-~---------------~~~~~~~v~~yD~~t~~W~~l~~~g~~P~~R~~~aa~ 255 (717)
.|.......... -++.+++.--.. . .......++++|+.+.+-..+.. . ..... ...
T Consensus 120 ~~~~~~~~~~~~~~~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~g~~~~l~~---~-~~~~~-~~~ 194 (388)
T 3pe7_A 120 VPAEWVGYGTWVANSDCTKLVGIEIRREDWVPLTDWKKFHEFYFTKPCCRLMRVDLKTGESTVILQ---E-NQWLG-HPI 194 (388)
T ss_dssp CCTTEEEEEEEEECTTSSEEEEEEEEGGGCCCCCSHHHHHHHGGGCCCEEEEEEETTTCCEEEEEE---E-SSCEE-EEE
T ss_pred chhhcccccceeECCCCCeeccccccCcccccccccchhhhhhccCCcceEEEEECCCCceEEeec---C-Ccccc-ccE
Confidence 333322222222 233333311000 0 01123679999999887666531 1 11222 233
Q ss_pred EEC--CcEEEEEcCCCCCCCCCeEEEEECCCCcEEEeecCCCCCCCCcceEEEEE--CCE-EEEEecCCCCCccCeEEEE
Q 005043 256 LYD--DKNLLIFGGSSKSKTLNDLYSLDFETMIWTRIKIRGFHPSPRAGCCGVLC--GTK-WYIAGGGSRKKRHAETLIF 330 (717)
Q Consensus 256 ~~~--~~~lyV~GG~~~~~~~ndv~~yd~~t~~W~~v~~~g~~P~~R~~~sav~~--~~~-IyV~GG~~~~~~~~dv~~y 330 (717)
... ++.|+.............+|.+|+.+.....+... +.. .......+ +++ |+...... ......++++
T Consensus 195 ~sp~dg~~l~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~---~~~-~~~~~~~~spdg~~l~~~~~~~-~~~~~~l~~~ 269 (388)
T 3pe7_A 195 YRPYDDSTVAFCHEGPHDLVDARMWLINEDGTNMRKVKTH---AEG-ESCTHEFWVPDGSALVYVSYLK-GSPDRFIYSA 269 (388)
T ss_dssp EETTEEEEEEEEECSCTTTSSCSEEEEETTSCCCEESCCC---CTT-EEEEEEEECTTSSCEEEEEEET-TCCCEEEEEE
T ss_pred ECCCCCCEEEEEEecCCCCCcceEEEEeCCCCceEEeeeC---CCC-cccccceECCCCCEEEEEecCC-CCCcceEEEE
Confidence 333 44333322211122345799999988776666432 111 11122223 455 44433222 2112359999
Q ss_pred ECCCCcEEEeec
Q 005043 331 DILKGEWSVAIT 342 (717)
Q Consensus 331 D~~t~~W~~l~~ 342 (717)
|+.+.+-+.+..
T Consensus 270 d~~~g~~~~l~~ 281 (388)
T 3pe7_A 270 DPETLENRQLTS 281 (388)
T ss_dssp CTTTCCEEEEEE
T ss_pred ecCCCceEEEEc
Confidence 999988776653
No 138
>2ad6_A Methanol dehydrogenase subunit 1; PQQ configuration, native, oxidoredu; HET: PQQ; 1.50A {Methylophilus methylotrophus} SCOP: b.70.1.1 PDB: 2ad7_A* 2ad8_A* 4aah_A* 1g72_A*
Probab=95.64 E-value=0.81 Score=51.97 Aligned_cols=128 Identities=18% Similarity=0.205 Sum_probs=72.4
Q ss_pred eEEEEECCEEEEEcccCCCCCcccEEEEEc-CCC--ceEEccccccCCCCCCCCCCCc--ccceEEEEECCEEEEEeccC
Q 005043 92 HAAAVIGNKMIVVGGESGNGLLDDVQVLNF-DRF--SWTAASSKLYLSPSSLPLKIPA--CRGHSLISWGKKVLLVGGKT 166 (717)
Q Consensus 92 haav~~~~~lyV~GG~~~~~~~~~v~~yd~-~t~--~W~~l~~~~~~~~~~~~~~~p~--r~~hs~v~~~~~Iyv~GG~~ 166 (717)
.+-++.++.||+.... ...++.+|+ .+. .|+.-....... .+... ....+.++.+++||+....
T Consensus 56 ~~P~v~~g~vyv~~~~-----~~~v~AlD~~~tG~~~W~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~v~v~~~d- 124 (571)
T 2ad6_A 56 GAPLVIGDMMYVHSAF-----PNNTYALNLNDPGKIVWQHKPKQDAST-----KAVMCCDVVDRGLAYGAGQIVKKQAN- 124 (571)
T ss_dssp SCCEEETTEEEEECST-----TTCEEEEETTCTTSEEEEECCCCCGGG-----GGGCTTCSCCCCCEEETTEEEEECTT-
T ss_pred cccEEECCEEEEEeCC-----CCEEEEEeCCCCccEEEEEcCCCCccc-----cccccccccccccEEECCEEEEEeCC-
Confidence 3445679999998753 236899999 665 698754311000 00000 0112345678999887431
Q ss_pred CCCCCceEEEEEECCCCc--EEEeeecCCCCCC-ceeeEEEEECCEEEEEccccCCCCCcCcEEEEEcCCCc--eEec
Q 005043 167 DSGSDRVSVWTFDTETEC--WSVVEAKGDIPVA-RSGHTVVRASSVLILFGGEDGKRRKLNDLHMFDLKSLT--WLPL 239 (717)
Q Consensus 167 ~~~~~~~~v~~yD~~t~~--W~~l~~~g~~P~~-R~~hs~~~~~~~Lyv~GG~~~~~~~~~~v~~yD~~t~~--W~~l 239 (717)
..++.+|..|++ |+.-.. ..+.. ....+.++.++.+|+-.+.... ..-..++.||+.+.+ |+.-
T Consensus 125 ------g~l~alD~~tG~~~W~~~~~--~~~~~~~~~~~P~v~~g~v~vg~~~~~~-~~~g~v~a~D~~tG~~~W~~~ 193 (571)
T 2ad6_A 125 ------GHLLALDAKTGKINWEVEVC--DPKVGSTLTQAPFVAKDTVLMGCSGAEL-GVRGAVNAFDLKTGELKWRAF 193 (571)
T ss_dssp ------SEEEEEETTTCCEEEEEECC--CGGGTCBCCSCCEEETTEEEEECBCGGG-TCCCEEEEEETTTCCEEEEEE
T ss_pred ------CEEEEEECCCCCEEEEecCC--CCCccceeccCCEEECCEEEEEecCCcc-CCCCEEEEEECCCCcEEEEEc
Confidence 369999998874 875431 11100 1122334568888875432111 123579999998765 8654
No 139
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*
Probab=95.57 E-value=0.1 Score=64.39 Aligned_cols=233 Identities=10% Similarity=0.066 Sum_probs=113.3
Q ss_pred CCEEEEEcccCCCCCcccEEEEEcCCCceEEccccccCCCCCCCCCCCcccceEEEEECCEEEEEeccCCCCCCceEEEE
Q 005043 98 GNKMIVVGGESGNGLLDDVQVLNFDRFSWTAASSKLYLSPSSLPLKIPACRGHSLISWGKKVLLVGGKTDSGSDRVSVWT 177 (717)
Q Consensus 98 ~~~lyV~GG~~~~~~~~~v~~yd~~t~~W~~l~~~~~~~~~~~~~~~p~r~~hs~v~~~~~Iyv~GG~~~~~~~~~~v~~ 177 (717)
++..+++|+.++ .+.+||..+......... ...........-+++.++.||.+ ..+.+
T Consensus 972 ~g~~l~~g~~~g-----~i~i~d~~~~~~~~~~~~-----------h~~~v~~l~~s~dg~~l~s~~~d------g~i~v 1029 (1249)
T 3sfz_A 972 HLEYVAFGDEDG-----AIKIIELPNNRVFSSGVG-----------HKKAVRHIQFTADGKTLISSSED------SVIQV 1029 (1249)
T ss_dssp TSSEEEEEETTS-----CCEEEETTTTSCEEECCC-----------CSSCCCCEEECSSSSCEEEECSS------SBEEE
T ss_pred CCCEEEEEcCCC-----CEEEEEcCCCceeeeccc-----------CCCceEEEEECCCCCEEEEEcCC------CEEEE
Confidence 455666666543 478888877643332110 01111112222256667777753 25889
Q ss_pred EECCCCcEEEeeecCCCCCCceeeEEEEECCEEEEEccccCCCCCcCcEEEEEcCCCceEeccCCCCCCCCCcccEEEEE
Q 005043 178 FDTETECWSVVEAKGDIPVARSGHTVVRASSVLILFGGEDGKRRKLNDLHMFDLKSLTWLPLHCTGTGPSPRSNHVAALY 257 (717)
Q Consensus 178 yD~~t~~W~~l~~~g~~P~~R~~hs~~~~~~~Lyv~GG~~~~~~~~~~v~~yD~~t~~W~~l~~~g~~P~~R~~~aa~~~ 257 (717)
||..++...... .....-.+++...+..++.|+.+ ..+.+||+.+.+-...- ........ +++..
T Consensus 1030 wd~~~~~~~~~~-----~~~~~v~~~~~~~~~~l~~~~~d------g~v~vwd~~~~~~~~~~---~~~~~~v~-~~~~s 1094 (1249)
T 3sfz_A 1030 WNWQTGDYVFLQ-----AHQETVKDFRLLQDSRLLSWSFD------GTVKVWNVITGRIERDF---TCHQGTVL-SCAIS 1094 (1249)
T ss_dssp EETTTTEEECCB-----CCSSCEEEEEECSSSEEEEEESS------SEEEEEETTTTCCCEEE---ECCSSCCC-CEEEC
T ss_pred EECCCCceEEEe-----cCCCcEEEEEEcCCCcEEEEECC------CcEEEEECCCCceeEEE---cccCCcEE-EEEEC
Confidence 999988765433 11122223334444445566543 35888998776533221 11111112 23333
Q ss_pred CCcEEEEEcCCCCCCCCCeEEEEECCCCcEEEeecCCCCCCCCcceEEEEE--CCEEEEEecCCCCCccCeEEEEECCCC
Q 005043 258 DDKNLLIFGGSSKSKTLNDLYSLDFETMIWTRIKIRGFHPSPRAGCCGVLC--GTKWYIAGGGSRKKRHAETLIFDILKG 335 (717)
Q Consensus 258 ~~~~lyV~GG~~~~~~~ndv~~yd~~t~~W~~v~~~g~~P~~R~~~sav~~--~~~IyV~GG~~~~~~~~dv~~yD~~t~ 335 (717)
.+..+++.|+.++ .+..||..+..- +... ........++.+ ++++++.|+.++. +.+||+.+.
T Consensus 1095 ~d~~~l~s~s~d~-----~v~iwd~~~~~~--~~~l---~~h~~~v~~~~~s~dg~~lat~~~dg~-----i~vwd~~~~ 1159 (1249)
T 3sfz_A 1095 SDATKFSSTSADK-----TAKIWSFDLLSP--LHEL---KGHNGCVRCSAFSLDGILLATGDDNGE-----IRIWNVSDG 1159 (1249)
T ss_dssp SSSSSCEEECCSS-----CCCEECSSSSSC--SBCC---CCCSSCEEEEEECSSSSEEEEEETTSC-----CCEEESSSS
T ss_pred CCCCEEEEEcCCC-----cEEEEECCCcce--eeee---ccCCCcEEEEEECCCCCEEEEEeCCCE-----EEEEECCCC
Confidence 3333667777654 377788765431 1111 111111222222 6778888886644 778888775
Q ss_pred cEEEeecCCCCC----CCCCcceEEEEEEeCCCcEEEEEcCCCCCCCCeEEEEEccCCcc
Q 005043 336 EWSVAITSPSSS----VTSNKGFTLVLVQHKEKDFLVAFGGIKKEPSNQVEVLSIEKNES 391 (717)
Q Consensus 336 ~W~~l~~~p~~~----~~~r~g~s~v~v~~~~~~~I~v~GG~~~~~~n~v~vyd~~~~eW 391 (717)
....... +... .........+.+.. ++.+++.+| ..+.+||+.+.+.
T Consensus 1160 ~~~~~~~-~~~~~~~~~~~~~~v~~l~fs~--dg~~l~s~~------g~v~vwd~~~g~~ 1210 (1249)
T 3sfz_A 1160 QLLHSCA-PISVEEGTATHGGWVTDVCFSP--DSKTLVSAG------GYLKWWNVATGDS 1210 (1249)
T ss_dssp CCCCCCC-CCC-------CCSCCCEEEECT--TSSCEEEES------SSEEEBCSSSCBC
T ss_pred ceEEEec-cccccccccccCceEEEEEECC--CCCEEEECC------CeEEEEECCCCce
Confidence 4322110 0000 00111122333432 333444444 2789999887763
No 140
>1qks_A Cytochrome CD1 nitrite reductase; enzyme, oxidoreductase, denitrification, electron transport, periplasmic; HET: HEC DHE; 1.28A {Paracoccus pantotrophus} SCOP: a.3.1.2 b.70.2.1 PDB: 1aof_A* 1aoq_A* 1aom_A* 1e2r_A* 1hj5_A* 1h9x_A* 1h9y_A* 1hcm_A* 1hj3_A* 1hj4_A* 1dy7_A* 1gq1_A*
Probab=95.54 E-value=0.9 Score=51.60 Aligned_cols=206 Identities=16% Similarity=0.124 Sum_probs=111.5
Q ss_pred CCEEEEEeccCCCCCCceEEEEEECCCCcEEEeeecCC--------CCCCceeeEEEEECCEEEEEccccCCCCCcCcEE
Q 005043 156 GKKVLLVGGKTDSGSDRVSVWTFDTETECWSVVEAKGD--------IPVARSGHTVVRASSVLILFGGEDGKRRKLNDLH 227 (717)
Q Consensus 156 ~~~Iyv~GG~~~~~~~~~~v~~yD~~t~~W~~l~~~g~--------~P~~R~~hs~~~~~~~Lyv~GG~~~~~~~~~~v~ 227 (717)
+..+|+..-. .+.+.++|..|.+=...-+.+. .|.+|.....+..++..+++-= ...+.++
T Consensus 255 Gk~l~v~n~~------~~~v~ViD~~t~~~~~~i~~~~~~~~~~~~~p~~rva~i~~s~~~~~~vv~~-----~~~g~v~ 323 (567)
T 1qks_A 255 DKYAIAGAYW------PPQYVIMDGETLEPKKIQSTRGMTYDEQEYHPEPRVAAILASHYRPEFIVNV-----KETGKIL 323 (567)
T ss_dssp TTEEEEEEEE------TTEEEEEETTTCCEEEEEECCEECTTTCCEESCCCEEEEEECSSSSEEEEEE-----TTTTEEE
T ss_pred CCEEEEEEcc------CCeEEEEECCCCcEEEEEeccccccccccccCCCceEEEEEcCCCCEEEEEe-----cCCCeEE
Confidence 4467766443 2367888987765332211111 1233444433333333333311 2346788
Q ss_pred EEEcCCCceEeccCCCCCCCCCcccEEEEEC-CcEEEEEcCCCCCCCCCeEEEEECCCCcEEEeecC-CCCCCCCcceEE
Q 005043 228 MFDLKSLTWLPLHCTGTGPSPRSNHVAALYD-DKNLLIFGGSSKSKTLNDLYSLDFETMIWTRIKIR-GFHPSPRAGCCG 305 (717)
Q Consensus 228 ~yD~~t~~W~~l~~~g~~P~~R~~~aa~~~~-~~~lyV~GG~~~~~~~ndv~~yd~~t~~W~~v~~~-g~~P~~R~~~sa 305 (717)
+.|..+.....+. .++.++.-|....-. ++++|+.... .+.|.++|..+++-...-.. +..|.+..+...
T Consensus 324 ~vd~~~~~~~~v~---~i~~~~~~~d~~~~pdgr~~~va~~~-----sn~V~ViD~~t~kl~~~i~vgg~~Phpg~g~~~ 395 (567)
T 1qks_A 324 LVDYTDLNNLKTT---EISAERFLHDGGLDGSHRYFITAANA-----RNKLVVIDTKEGKLVAIEDTGGQTPHPGRGANF 395 (567)
T ss_dssp EEETTCSSEEEEE---EEECCSSEEEEEECTTSCEEEEEEGG-----GTEEEEEETTTTEEEEEEECSSSSBCCTTCEEE
T ss_pred EEecCCCccceee---eeeccccccCceECCCCCEEEEEeCC-----CCeEEEEECCCCcEEEEEeccCcCCCCccceee
Confidence 9998776655544 344556666555543 4555554332 36799999998875544444 445655444332
Q ss_pred EEE-CCEEEEEecCCCCCccCeEEEEECCCC-----cEEEeecCCCCCCCCCcceEEEEEEeCCCcEEEEEcCCCCC--C
Q 005043 306 VLC-GTKWYIAGGGSRKKRHAETLIFDILKG-----EWSVAITSPSSSVTSNKGFTLVLVQHKEKDFLVAFGGIKKE--P 377 (717)
Q Consensus 306 v~~-~~~IyV~GG~~~~~~~~dv~~yD~~t~-----~W~~l~~~p~~~~~~r~g~s~v~v~~~~~~~I~v~GG~~~~--~ 377 (717)
..- ++.+|+.+-... ..|-++|..+. .|+.+...+... +.++.+..++++.++|+---.+.+ .
T Consensus 396 ~~p~~g~v~~t~~~g~----~~Vsvid~~~~~~~~~~~kvv~~i~~~g-----~g~~~i~~~p~~~~l~v~~~~~~~~~~ 466 (567)
T 1qks_A 396 VHPTFGPVWATSHMGD----DSVALIGTDPEGHPDNAWKILDSFPALG-----GGSLFIKTHPNSQYLYVDATLNPEAEI 466 (567)
T ss_dssp EETTTEEEEEEEBSSS----SEEEEEECCTTTCTTTBTSEEEEEECSC-----SCCCCEECCTTCSEEEEECTTCSSHHH
T ss_pred ECCCCCcEEEeCCCCC----CeEEEecCCCCCCccccCEEEEEEecCC-----CCCEEEEeCCCCCeEEEecCCCCCccc
Confidence 222 367777663322 35888888763 387776433221 112222234566788875432222 2
Q ss_pred CCeEEEEEccCC
Q 005043 378 SNQVEVLSIEKN 389 (717)
Q Consensus 378 ~n~v~vyd~~~~ 389 (717)
.+.|.+||+.+.
T Consensus 467 ~~~v~v~d~~~~ 478 (567)
T 1qks_A 467 SGSVAVFDIKAM 478 (567)
T ss_dssp HTCEEEEEGGGC
T ss_pred CceEEEEECCcc
Confidence 568999999876
No 141
>1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: b.69.2.2 PDB: 1jju_B*
Probab=95.49 E-value=1.2 Score=44.96 Aligned_cols=155 Identities=14% Similarity=0.070 Sum_probs=76.3
Q ss_pred EEEEcccCCCCCcccEEEEEcCCCceEEccccccCCCCCCCCCCCcccceEEEE-EC-CEEEEEeccCCCCCCceEEEEE
Q 005043 101 MIVVGGESGNGLLDDVQVLNFDRFSWTAASSKLYLSPSSLPLKIPACRGHSLIS-WG-KKVLLVGGKTDSGSDRVSVWTF 178 (717)
Q Consensus 101 lyV~GG~~~~~~~~~v~~yd~~t~~W~~l~~~~~~~~~~~~~~~p~r~~hs~v~-~~-~~Iyv~GG~~~~~~~~~~v~~y 178 (717)
+++.++.+ +.+++||+.+.+....-.. +......+.++. -+ +.+|+.++.. ..+++|
T Consensus 3 ~~v~~~~~-----~~v~~~d~~~~~~~~~~~~----------~~~~~~~~~~~~s~dg~~l~v~~~~~------~~v~~~ 61 (337)
T 1pby_B 3 YILAPARP-----DKLVVIDTEKMAVDKVITI----------ADAGPTPMVPMVAPGGRIAYATVNKS------ESLVKI 61 (337)
T ss_dssp EEEEEETT-----TEEEEEETTTTEEEEEEEC----------TTCTTCCCCEEECTTSSEEEEEETTT------TEEEEE
T ss_pred EEEEcCCC-----CeEEEEECCCCcEEEEEEc----------CCCCCCccceEEcCCCCEEEEEeCCC------CeEEEE
Confidence 45555533 3689999988754332221 010000122222 23 4677776532 369999
Q ss_pred ECCCCcEEEeeecCCCCC--CceeeEEEEE-C-CEEEEEcccc--CCCC---CcCcEEEEEcCCCceEeccCCCCCCCCC
Q 005043 179 DTETECWSVVEAKGDIPV--ARSGHTVVRA-S-SVLILFGGED--GKRR---KLNDLHMFDLKSLTWLPLHCTGTGPSPR 249 (717)
Q Consensus 179 D~~t~~W~~l~~~g~~P~--~R~~hs~~~~-~-~~Lyv~GG~~--~~~~---~~~~v~~yD~~t~~W~~l~~~g~~P~~R 249 (717)
|+.+.+-...-..+. +. ....+.++.. + ..||+..+.. .... .-+.+++||+.+.+....-..+..
T Consensus 62 d~~~~~~~~~~~~~~-~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~---- 136 (337)
T 1pby_B 62 DLVTGETLGRIDLST-PEERVKSLFGAALSPDGKTLAIYESPVRLELTHFEVQPTRVALYDAETLSRRKAFEAPRQ---- 136 (337)
T ss_dssp ETTTCCEEEEEECCB-TTEEEECTTCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEETTTTEEEEEEECCSS----
T ss_pred ECCCCCeEeeEEcCC-cccccccccceEECCCCCEEEEEecccccccccccccCceEEEEECCCCcEEEEEeCCCC----
Confidence 998877543221111 00 0011223332 3 3677664211 0001 136799999988765433211111
Q ss_pred cccEEEEE-CCcEEEEEcCCCCCCCCCeEEEEECCCCcEEEe
Q 005043 250 SNHVAALY-DDKNLLIFGGSSKSKTLNDLYSLDFETMIWTRI 290 (717)
Q Consensus 250 ~~~aa~~~-~~~~lyV~GG~~~~~~~ndv~~yd~~t~~W~~v 290 (717)
-+.++.. +++.+|+.+ +.+++||+.++.-...
T Consensus 137 -~~~~~~s~dg~~l~~~~--------~~i~~~d~~~~~~~~~ 169 (337)
T 1pby_B 137 -ITMLAWARDGSKLYGLG--------RDLHVMDPEAGTLVED 169 (337)
T ss_dssp -CCCEEECTTSSCEEEES--------SSEEEEETTTTEEEEE
T ss_pred -cceeEECCCCCEEEEeC--------CeEEEEECCCCcEeee
Confidence 2223333 445466652 3599999988775543
No 142
>1qhu_A Protein (hemopexin); beta propeller, HAEM binding and transport, iron metabolism, binding protein; HET: HEM; 2.30A {Oryctolagus cuniculus} SCOP: b.66.1.1 b.66.1.1 PDB: 1qjs_A*
Probab=95.47 E-value=1.1 Score=49.59 Aligned_cols=188 Identities=17% Similarity=0.198 Sum_probs=101.2
Q ss_pred CCEEEEEeccCCCCCCceEEEEEECCCCcEEEeeecCCCCCCceeeEEEEECCEEEEEccccCCCCCcCcEEEEEcCCCc
Q 005043 156 GKKVLLVGGKTDSGSDRVSVWTFDTETECWSVVEAKGDIPVARSGHTVVRASSVLILFGGEDGKRRKLNDLHMFDLKSLT 235 (717)
Q Consensus 156 ~~~Iyv~GG~~~~~~~~~~v~~yD~~t~~W~~l~~~g~~P~~R~~hs~~~~~~~Lyv~GG~~~~~~~~~~v~~yD~~t~~ 235 (717)
++++|+|-|. ..|+||..+.+.....- ..+|. --++....+++|+|-| +..|+||+.+.+
T Consensus 158 ~~~~yfFkG~--------~yw~yd~~~~~~~~~~w-~gi~~---iDAA~~~~g~~YfFkG--------~~y~rfd~~~~~ 217 (460)
T 1qhu_A 158 DEGILFFQGN--------RKWFWDLTTGTKKERSW-PAVGN---CTSALRWLGRYYCFQG--------NQFLRFNPVSGE 217 (460)
T ss_dssp SSEEEEEETT--------EEEEEETTTTEEEEECC-TTSCC---CSEEEEETTEEEEEET--------TEEEEECTTTCC
T ss_pred CCeEEEEecc--------cEEEEecccceeecccC-CCCCc---cchheeeCCceEEEEC--------CEEEEEcCccCc
Confidence 6788999874 58999999886654221 12332 2355556789999966 446777765443
Q ss_pred ------------eEeccCCCC---------------CCCCC-cccEEEE-ECCcEEEEEcCCCCCCCCCeEEEEECCCCc
Q 005043 236 ------------WLPLHCTGT---------------GPSPR-SNHVAAL-YDDKNLLIFGGSSKSKTLNDLYSLDFETMI 286 (717)
Q Consensus 236 ------------W~~l~~~g~---------------~P~~R-~~~aa~~-~~~~~lyV~GG~~~~~~~ndv~~yd~~t~~ 286 (717)
|..++..|. ...+. ..-+++. .++. +|+|-|. ..|+++.....
T Consensus 218 v~~gyPk~is~~w~~c~~~g~~~~~~~st~~~~~p~~C~p~~~~DAi~~~~~G~-tYFFKg~-------~yWR~~~~~~~ 289 (460)
T 1qhu_A 218 VPPGYPLDVRDYFLSCPGRGHRSSHRNSTQHGHESTRCDPDLVLSAMVSDNHGA-TYVFSGS-------HYWRLDTNRDG 289 (460)
T ss_dssp CCTTCCEEHHHHTSCCTTCCSCC-------CCCTTTTTCTTCCCCEEEECTTCC-EEEEETT-------EEEECTTGGGC
T ss_pred ccCCCCcchhhcccCCCCCCCccccccCCccccccccccCCCCcCEEEecCCCe-EEEEeCC-------EEEEEecCCCC
Confidence 322221110 00111 1223333 3455 8888773 47777765433
Q ss_pred EEEeec---CCCCCCCCcceEEEEECCEEEEEecCCCCCccCeEEEEECCCCcEEEeecCCCC------CCCC--CcceE
Q 005043 287 WTRIKI---RGFHPSPRAGCCGVLCGTKWYIAGGGSRKKRHAETLIFDILKGEWSVAITSPSS------SVTS--NKGFT 355 (717)
Q Consensus 287 W~~v~~---~g~~P~~R~~~sav~~~~~IyV~GG~~~~~~~~dv~~yD~~t~~W~~l~~~p~~------~~~~--r~g~s 355 (717)
+..... -+.+| ..--++...++++|+|=| +.+|+|+.... .+.+.-.|.+ .|.. ...--
T Consensus 290 ~~p~~Is~~WpglP--~~IDAAf~~~~~~yfFkG-------~~yw~f~~~~g-~~~~~GyPK~I~~~lGlp~~~~~~~ID 359 (460)
T 1qhu_A 290 WHSWPIAHQWPQGP--STVDAAFSWEDKLYLIQD-------TKVYVFLTKGG-YTLVNGYPKRLEKELGSPPVISLEAVD 359 (460)
T ss_dssp CCCEEGGGTCTTSC--SSCSEEEEETTEEEEEET-------TEEEEEECSBS-CEECTTCCEEHHHHHCCCSSCCCSCCC
T ss_pred cCccchhhhccCCC--CCCcEEEEECCeEEEEeC-------CEEEEEeCCCC-ceecCCCCeEHHHhccCCCccccCccc
Confidence 322111 11123 223455566899999987 46899986531 2222211111 1111 11223
Q ss_pred EEEEEeCCCcEEEEEcCCCCCCCCeEEEEEccC
Q 005043 356 LVLVQHKEKDFLVAFGGIKKEPSNQVEVLSIEK 388 (717)
Q Consensus 356 ~v~v~~~~~~~I~v~GG~~~~~~n~v~vyd~~~ 388 (717)
++.. ....+++|+|-|. ..|.||...
T Consensus 360 AA~~-~~~~~ktyfFkG~------~ywryd~~~ 385 (460)
T 1qhu_A 360 AAFV-CPGSSRLHIMAGR------RLWWLDLKS 385 (460)
T ss_dssp EEEC-CTTCCEEEEEETT------EEEEEEGGG
T ss_pred EEEE-eCCCCEEEEEECC------EEEEEECCC
Confidence 3332 2346788988884 789999774
No 143
>3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae}
Probab=95.46 E-value=1.5 Score=43.66 Aligned_cols=226 Identities=11% Similarity=0.033 Sum_probs=104.7
Q ss_pred ECCEEEEEcccCCCCCcccEEEEEcCCCceEEccccccCCCCCCCCCCCcccceEEEEE-CCEEEEEeccCCCCCCceEE
Q 005043 97 IGNKMIVVGGESGNGLLDDVQVLNFDRFSWTAASSKLYLSPSSLPLKIPACRGHSLISW-GKKVLLVGGKTDSGSDRVSV 175 (717)
Q Consensus 97 ~~~~lyV~GG~~~~~~~~~v~~yd~~t~~W~~l~~~~~~~~~~~~~~~p~r~~hs~v~~-~~~Iyv~GG~~~~~~~~~~v 175 (717)
.++..++.|+.++ .+.+||+.+..-...... . ...-.+++.. ++.+++.|+.+. .+
T Consensus 27 ~~~~~l~s~~~dg-----~v~vw~~~~~~~~~~~~~-----------~-~~~v~~~~~~~~~~~l~~~~~dg------~i 83 (313)
T 3odt_A 27 VDDSKVASVSRDG-----TVRLWSKDDQWLGTVVYT-----------G-QGFLNSVCYDSEKELLLFGGKDT------MI 83 (313)
T ss_dssp EETTEEEEEETTS-----EEEEEEESSSEEEEEEEE-----------C-SSCEEEEEEETTTTEEEEEETTS------CE
T ss_pred cCCCEEEEEEcCC-----cEEEEECCCCEEEEEeec-----------C-CccEEEEEECCCCCEEEEecCCC------eE
Confidence 4455666776543 588899877644333221 1 1111233333 566777777542 36
Q ss_pred EEEECCCCc-EEEeeecCCCCCCceeeEEEEECCEEEEEccccCCCCCcCcEEEEEcCCCceEeccCCCCCCCCCcccEE
Q 005043 176 WTFDTETEC-WSVVEAKGDIPVARSGHTVVRASSVLILFGGEDGKRRKLNDLHMFDLKSLTWLPLHCTGTGPSPRSNHVA 254 (717)
Q Consensus 176 ~~yD~~t~~-W~~l~~~g~~P~~R~~hs~~~~~~~Lyv~GG~~~~~~~~~~v~~yD~~t~~W~~l~~~g~~P~~R~~~aa 254 (717)
..|++.... ...+.. +......-..+..++.+++.|+.+ ..+.+||.....+.... . .. .-..+
T Consensus 84 ~~~~~~~~~~~~~~~~---~~~~~~~i~~~~~~~~~l~~~~~d------~~i~~~d~~~~~~~~~~----~-~~-~v~~~ 148 (313)
T 3odt_A 84 NGVPLFATSGEDPLYT---LIGHQGNVCSLSFQDGVVISGSWD------KTAKVWKEGSLVYNLQA----H-NA-SVWDA 148 (313)
T ss_dssp EEEETTCCTTSCC-CE---ECCCSSCEEEEEEETTEEEEEETT------SEEEEEETTEEEEEEEC----C-SS-CEEEE
T ss_pred EEEEeeecCCCCcccc---hhhcccCEEEEEecCCEEEEEeCC------CCEEEEcCCcEEEeccc----C-CC-ceeEE
Confidence 666665421 111110 111111112222355566666644 34777883222222111 1 11 11222
Q ss_pred EEE--CCcEEEEEcCCCCCCCCCeEEEEECCCCcEEEeecCCCCCCCCcceEEEE-ECCEEEEEecCCCCCccCeEEEEE
Q 005043 255 ALY--DDKNLLIFGGSSKSKTLNDLYSLDFETMIWTRIKIRGFHPSPRAGCCGVL-CGTKWYIAGGGSRKKRHAETLIFD 331 (717)
Q Consensus 255 ~~~--~~~~lyV~GG~~~~~~~ndv~~yd~~t~~W~~v~~~g~~P~~R~~~sav~-~~~~IyV~GG~~~~~~~~dv~~yD 331 (717)
... ++. +++.|+.++ .+..||.... -..+.. +......+++. -++. ++.|+.++ .+.+||
T Consensus 149 ~~~~~~~~-~l~~~~~d~-----~i~i~d~~~~-~~~~~~----~~~~~i~~~~~~~~~~-~~~~~~dg-----~i~i~d 211 (313)
T 3odt_A 149 KVVSFSEN-KFLTASADK-----TIKLWQNDKV-IKTFSG----IHNDVVRHLAVVDDGH-FISCSNDG-----LIKLVD 211 (313)
T ss_dssp EEEETTTT-EEEEEETTS-----CEEEEETTEE-EEEECS----SCSSCEEEEEEEETTE-EEEEETTS-----EEEEEE
T ss_pred EEccCCCC-EEEEEECCC-----CEEEEecCce-EEEEec----cCcccEEEEEEcCCCe-EEEccCCC-----eEEEEE
Confidence 222 455 666676553 4888884322 112211 11222223333 3667 66776553 589999
Q ss_pred CCCCcEEEeecCCCCCCCCCcceEEEEEEeCCCcEEEEEcCCCCCCCCeEEEEEccCCc
Q 005043 332 ILKGEWSVAITSPSSSVTSNKGFTLVLVQHKEKDFLVAFGGIKKEPSNQVEVLSIEKNE 390 (717)
Q Consensus 332 ~~t~~W~~l~~~p~~~~~~r~g~s~v~v~~~~~~~I~v~GG~~~~~~n~v~vyd~~~~e 390 (717)
+.+.+-...... .......+.+.. ++. ++.||.+ ..+.+||+.+.+
T Consensus 212 ~~~~~~~~~~~~------~~~~i~~~~~~~--~~~-l~~~~~d----g~v~iwd~~~~~ 257 (313)
T 3odt_A 212 MHTGDVLRTYEG------HESFVYCIKLLP--NGD-IVSCGED----RTVRIWSKENGS 257 (313)
T ss_dssp TTTCCEEEEEEC------CSSCEEEEEECT--TSC-EEEEETT----SEEEEECTTTCC
T ss_pred CCchhhhhhhhc------CCceEEEEEEec--CCC-EEEEecC----CEEEEEECCCCc
Confidence 987653332211 111223333432 333 5566643 268888887765
No 144
>2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae}
Probab=95.44 E-value=0.83 Score=47.94 Aligned_cols=200 Identities=16% Similarity=0.087 Sum_probs=95.7
Q ss_pred CCEEEEEeccCCCCCCceEEEEEECCC----C-cEEEeeecCCCCCCceeeEEEEE--CCEEEEEccccCCCCCcCcEEE
Q 005043 156 GKKVLLVGGKTDSGSDRVSVWTFDTET----E-CWSVVEAKGDIPVARSGHTVVRA--SSVLILFGGEDGKRRKLNDLHM 228 (717)
Q Consensus 156 ~~~Iyv~GG~~~~~~~~~~v~~yD~~t----~-~W~~l~~~g~~P~~R~~hs~~~~--~~~Lyv~GG~~~~~~~~~~v~~ 228 (717)
++.+++.|+.+. .+.+||+.+ . .-..+. .....-.+++.. ++.+++.|+.++ .+.+
T Consensus 78 ~~~~l~~~~~dg------~v~vw~~~~~~~~~~~~~~~~-----~h~~~v~~~~~~~~~~~~l~s~~~dg------~v~i 140 (416)
T 2pm9_A 78 NNKIIAGALDNG------SLELYSTNEANNAINSMARFS-----NHSSSVKTVKFNAKQDNVLASGGNNG------EIFI 140 (416)
T ss_dssp SSSCEEEEESSS------CEEEECCSSTTSCCCEEEECC-----CSSSCCCEEEECSSSTTBEEEECSSS------CEEB
T ss_pred CCCeEEEEccCC------eEEEeecccccccccchhhcc-----CCccceEEEEEcCCCCCEEEEEcCCC------eEEE
Confidence 566667776532 478888876 1 222221 111122233333 256777776543 4888
Q ss_pred EEcCCCc------eE-eccCCCCCCCCCcccEEEEECC-cEEEEEcCCCCCCCCCeEEEEECCCCcEEEeecCCCCCCC-
Q 005043 229 FDLKSLT------WL-PLHCTGTGPSPRSNHVAALYDD-KNLLIFGGSSKSKTLNDLYSLDFETMIWTRIKIRGFHPSP- 299 (717)
Q Consensus 229 yD~~t~~------W~-~l~~~g~~P~~R~~~aa~~~~~-~~lyV~GG~~~~~~~ndv~~yd~~t~~W~~v~~~g~~P~~- 299 (717)
||+.+.. -. .+.. .......-.+++...+ ..+++.|+.++ .+.+||+.+......-........
T Consensus 141 wd~~~~~~~~~~~~~~~~~~--~~~~~~~v~~~~~~~~~~~~l~~~~~dg-----~v~iwd~~~~~~~~~~~~~~~~~~~ 213 (416)
T 2pm9_A 141 WDMNKCTESPSNYTPLTPGQ--SMSSVDEVISLAWNQSLAHVFASAGSSN-----FASIWDLKAKKEVIHLSYTSPNSGI 213 (416)
T ss_dssp CBTTTTSSCTTTCCCBCCCC--SCCSSCCCCEEEECSSCTTEEEEESSSS-----CEEEEETTTTEEEEEECCCCCSSCC
T ss_pred EECCCCcccccccccccccc--ccCCCCCeeEEEeCCCCCcEEEEEcCCC-----CEEEEECCCCCcceEEecccccccc
Confidence 8887664 11 1100 0111112223444433 33777777654 499999988765443322100000
Q ss_pred CcceEEEEE--C-CEEEEEecCCCCCccCeEEEEECCCCcEEEeecCCCCCCCCCcceEEEEEEeCCCcEEEEEcCCCCC
Q 005043 300 RAGCCGVLC--G-TKWYIAGGGSRKKRHAETLIFDILKGEWSVAITSPSSSVTSNKGFTLVLVQHKEKDFLVAFGGIKKE 376 (717)
Q Consensus 300 R~~~sav~~--~-~~IyV~GG~~~~~~~~dv~~yD~~t~~W~~l~~~p~~~~~~r~g~s~v~v~~~~~~~I~v~GG~~~~ 376 (717)
......+.+ + ..+++.|+.++. ...+.+||+.+..-. +.... .........+.+. +.++.+++.|+.++
T Consensus 214 ~~~v~~~~~~~~~~~~l~~~~~d~~--~~~i~~~d~~~~~~~-~~~~~---~~~~~~v~~~~~s-~~~~~~l~s~~~dg- 285 (416)
T 2pm9_A 214 KQQLSVVEWHPKNSTRVATATGSDN--DPSILIWDLRNANTP-LQTLN---QGHQKGILSLDWC-HQDEHLLLSSGRDN- 285 (416)
T ss_dssp CCCEEEEEECSSCTTEEEEEECCSS--SCCCCEEETTSTTSC-SBCCC---SCCSSCEEEEEEC-SSCSSCEEEEESSS-
T ss_pred CCceEEEEECCCCCCEEEEEECCCC--CceEEEEeCCCCCCC-cEEee---cCccCceeEEEeC-CCCCCeEEEEeCCC-
Confidence 222233333 2 357777775541 124778898774311 11000 0011222333332 21344666676542
Q ss_pred CCCeEEEEEccCCc
Q 005043 377 PSNQVEVLSIEKNE 390 (717)
Q Consensus 377 ~~n~v~vyd~~~~e 390 (717)
.+.+||+.+.+
T Consensus 286 ---~v~~wd~~~~~ 296 (416)
T 2pm9_A 286 ---TVLLWNPESAE 296 (416)
T ss_dssp ---EEEEECSSSCC
T ss_pred ---CEEEeeCCCCc
Confidence 57888877654
No 145
>1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: b.69.2.2 PDB: 1jju_B*
Probab=95.44 E-value=1.3 Score=44.81 Aligned_cols=235 Identities=15% Similarity=0.025 Sum_probs=111.6
Q ss_pred CEEEEEcccCCCCCcccEEEEEcCCCceEEccccccCCCCCCCCCCCc---ccceEEEEE--CCEEEEEeccC---CCCC
Q 005043 99 NKMIVVGGESGNGLLDDVQVLNFDRFSWTAASSKLYLSPSSLPLKIPA---CRGHSLISW--GKKVLLVGGKT---DSGS 170 (717)
Q Consensus 99 ~~lyV~GG~~~~~~~~~v~~yd~~t~~W~~l~~~~~~~~~~~~~~~p~---r~~hs~v~~--~~~Iyv~GG~~---~~~~ 170 (717)
+.+|+.++.+ ..+++||+.+.+-...-.. ..+. ...+.++.. ++.+|+..... ....
T Consensus 46 ~~l~v~~~~~-----~~v~~~d~~~~~~~~~~~~----------~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~ 110 (337)
T 1pby_B 46 RIAYATVNKS-----ESLVKIDLVTGETLGRIDL----------STPEERVKSLFGAALSPDGKTLAIYESPVRLELTHF 110 (337)
T ss_dssp SEEEEEETTT-----TEEEEEETTTCCEEEEEEC----------CBTTEEEECTTCEEECTTSSEEEEEEEEEEECSSCE
T ss_pred CEEEEEeCCC-----CeEEEEECCCCCeEeeEEc----------CCcccccccccceEECCCCCEEEEEecccccccccc
Confidence 4677776532 3689999988754332111 0000 011122222 34677764211 0000
Q ss_pred --CceEEEEEECCCCcEEEeeecCCCCCCceeeEEEEE-CC-EEEEEccccCCCCCcCcEEEEEcCCCceEeccCCCCCC
Q 005043 171 --DRVSVWTFDTETECWSVVEAKGDIPVARSGHTVVRA-SS-VLILFGGEDGKRRKLNDLHMFDLKSLTWLPLHCTGTGP 246 (717)
Q Consensus 171 --~~~~v~~yD~~t~~W~~l~~~g~~P~~R~~hs~~~~-~~-~Lyv~GG~~~~~~~~~~v~~yD~~t~~W~~l~~~g~~P 246 (717)
....+++||+.+.+....-..+. ..+.++.. ++ .||+.+ +.+++||+.+.+-...-..+..+
T Consensus 111 ~~~~~~i~v~d~~~~~~~~~~~~~~-----~~~~~~~s~dg~~l~~~~---------~~i~~~d~~~~~~~~~~~~~~~~ 176 (337)
T 1pby_B 111 EVQPTRVALYDAETLSRRKAFEAPR-----QITMLAWARDGSKLYGLG---------RDLHVMDPEAGTLVEDKPIQSWE 176 (337)
T ss_dssp EECCCEEEEEETTTTEEEEEEECCS-----SCCCEEECTTSSCEEEES---------SSEEEEETTTTEEEEEECSTTTT
T ss_pred cccCceEEEEECCCCcEEEEEeCCC-----CcceeEECCCCCEEEEeC---------CeEEEEECCCCcEeeeeeccccC
Confidence 12579999999877554332111 12223332 33 466652 45999999887654322111211
Q ss_pred CCCcccEEEEECCcEEEEEcCCCCC------------------CCCCeEEEEECCCCcEEEeecCCCCCCCCcceEEEEE
Q 005043 247 SPRSNHVAALYDDKNLLIFGGSSKS------------------KTLNDLYSLDFETMIWTRIKIRGFHPSPRAGCCGVLC 308 (717)
Q Consensus 247 ~~R~~~aa~~~~~~~lyV~GG~~~~------------------~~~ndv~~yd~~t~~W~~v~~~g~~P~~R~~~sav~~ 308 (717)
.+. ...-+++.+|+.+..... .....++.||+.+.+-..+... +......+++..
T Consensus 177 ~~~----~~s~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~~---~~~~~~~~~~~s 249 (337)
T 1pby_B 177 AET----YAQPDVLAVWNQHESSGVMATPFYTARKDIDPADPTAYRTGLLTMDLETGEMAMREVR---IMDVFYFSTAVN 249 (337)
T ss_dssp TTT----BCCCBCCCCCCCCTTTTEEEEEEEEEBTTSCTTSGGGEEEEEEEEETTTCCEEEEEEE---ECSSCEEEEEEC
T ss_pred CCc----eeCCCccEEeeeccCCCceeeeeeccccccccccccccccceEEEeCCCCCceEeecC---CCCCceeeEEEC
Confidence 111 111122323332211100 0111589999988876533321 222222233332
Q ss_pred -C-CEEEEEecCCCCCccCeEEEEECCCCcEEEeecCCCCCCCCCcceEEEEEEeCCCcEEEEEcCCCCCCCCeEEEEEc
Q 005043 309 -G-TKWYIAGGGSRKKRHAETLIFDILKGEWSVAITSPSSSVTSNKGFTLVLVQHKEKDFLVAFGGIKKEPSNQVEVLSI 386 (717)
Q Consensus 309 -~-~~IyV~GG~~~~~~~~dv~~yD~~t~~W~~l~~~p~~~~~~r~g~s~v~v~~~~~~~I~v~GG~~~~~~n~v~vyd~ 386 (717)
+ ..+|+.. ..+++||+.+.+-......+ ..-.++ .+. +++..||+. +. .+.+.+||+
T Consensus 250 ~dg~~l~~~~--------~~v~~~d~~~~~~~~~~~~~------~~~~~~-~~s-~dg~~l~~~-~~----~~~i~v~d~ 308 (337)
T 1pby_B 250 PAKTRAFGAY--------NVLESFDLEKNASIKRVPLP------HSYYSV-NVS-TDGSTVWLG-GA----LGDLAAYDA 308 (337)
T ss_dssp TTSSEEEEEE--------SEEEEEETTTTEEEEEEECS------SCCCEE-EEC-TTSCEEEEE-SB----SSEEEEEET
T ss_pred CCCCEEEEeC--------CeEEEEECCCCcCcceecCC------CceeeE-EEC-CCCCEEEEE-cC----CCcEEEEEC
Confidence 3 4555551 57999999887654332111 111222 332 234456664 32 247999999
Q ss_pred cCCc
Q 005043 387 EKNE 390 (717)
Q Consensus 387 ~~~e 390 (717)
.+.+
T Consensus 309 ~~~~ 312 (337)
T 1pby_B 309 ETLE 312 (337)
T ss_dssp TTCC
T ss_pred cCCc
Confidence 8776
No 146
>4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A
Probab=95.38 E-value=3.5 Score=43.84 Aligned_cols=234 Identities=12% Similarity=0.117 Sum_probs=111.9
Q ss_pred CCEEEEEcccCCCCCcccEEEEEcCCCceEEccccccCCCCCCCCCCCcccceEEEEECCEEEEEeccCCCCCCceEEEE
Q 005043 98 GNKMIVVGGESGNGLLDDVQVLNFDRFSWTAASSKLYLSPSSLPLKIPACRGHSLISWGKKVLLVGGKTDSGSDRVSVWT 177 (717)
Q Consensus 98 ~~~lyV~GG~~~~~~~~~v~~yd~~t~~W~~l~~~~~~~~~~~~~~~p~r~~hs~v~~~~~Iyv~GG~~~~~~~~~~v~~ 177 (717)
++.+++.|+.++ .+.+||+.+.+-..... . ... ...+...++.+++.|+.+ ..++.
T Consensus 158 dg~~lasgs~Dg-----~v~iWd~~~~~~~~~~~----------~-h~~--~v~~~s~~~~~l~sgs~d------~~i~~ 213 (420)
T 4gga_A 158 EGNYLAVGTSSA-----EVQLWDVQQQKRLRNMT----------S-HSA--RVGSLSWNSYILSSGSRS------GHIHH 213 (420)
T ss_dssp TSSEEEEEETTS-----CEEEEETTTTEEEEEEC----------C-CSS--CEEEEEEETTEEEEEETT------SEEEE
T ss_pred CCCEEEEEECCC-----eEEEEEcCCCcEEEEEe----------C-CCC--ceEEEeeCCCEEEEEeCC------CceeE
Confidence 466777777654 48899988764322211 0 111 223445567777777764 25788
Q ss_pred EECCCCcEEEeeecCCCCCCceeeEEEEECCEEEEEccccCCCCCcCcEEEEEcCCCc--eEeccCCCCCCCCCcccEEE
Q 005043 178 FDTETECWSVVEAKGDIPVARSGHTVVRASSVLILFGGEDGKRRKLNDLHMFDLKSLT--WLPLHCTGTGPSPRSNHVAA 255 (717)
Q Consensus 178 yD~~t~~W~~l~~~g~~P~~R~~hs~~~~~~~Lyv~GG~~~~~~~~~~v~~yD~~t~~--W~~l~~~g~~P~~R~~~aa~ 255 (717)
+|..+.........+ ...........-++..++.||.++ .+.++|..+.. +..+.. .......-.+.+
T Consensus 214 ~d~~~~~~~~~~~~~--h~~~~~~~~~~~~g~~l~s~~~D~------~v~i~~~~~~~~~~~~~~~--~~~~~~~V~~~~ 283 (420)
T 4gga_A 214 HDVRVAEHHVATLSG--HSQEVCGLRWAPDGRHLASGGNDN------LVNVWPSAPGEGGWVPLQT--FTQHQGAVKAVA 283 (420)
T ss_dssp EETTSSSCEEEEEEC--CSSCEEEEEECTTSSEEEEEETTS------CEEEEESSCCSSCSCCSEE--ECCCSSCEEEEE
T ss_pred eeecccceeeEEecc--cccceeeeeecCCCCeeeeeeccc------cceEEeeccccccceeeee--ecccCCceeeee
Confidence 887765433222111 111111112222456666666543 36677776543 111110 000111111222
Q ss_pred EE--CCcEEEEEcCCCCCCCCCeEEEEECCCCcEEEeecCCCCCCCCcceEEEEE--CCEEEEEecCCCCCccCeEEEEE
Q 005043 256 LY--DDKNLLIFGGSSKSKTLNDLYSLDFETMIWTRIKIRGFHPSPRAGCCGVLC--GTKWYIAGGGSRKKRHAETLIFD 331 (717)
Q Consensus 256 ~~--~~~~lyV~GG~~~~~~~ndv~~yd~~t~~W~~v~~~g~~P~~R~~~sav~~--~~~IyV~GG~~~~~~~~dv~~yD 331 (717)
.. +...+.+.||... ..|..||+.++.-...... .....+++.. ++.+++.+|... ..|.+||
T Consensus 284 ~~p~~~~~la~~~gs~D----~~I~iwd~~t~~~~~~~~~-----~~~v~~~~~~~~~~~lv~~sg~~d----~~I~iwd 350 (420)
T 4gga_A 284 WCPWQSNVLATGGGTSD----RHIRIWNVCSGACLSAVDA-----HSQVCSILWSPHYKELISGHGFAQ----NQLVIWK 350 (420)
T ss_dssp ECTTCTTEEEEEECTTT----CEEEEEETTTTEEEEEEEC-----SSCEEEEEEETTTTEEEEEECTTT----CCEEEEE
T ss_pred eCCCcccEEEEEeecCC----CEEEEEeCCccccceeecc-----ccceeeeeecCCCCeEEEEEecCC----CEEEEEE
Confidence 22 3343334444322 3588999988765544332 1122222322 455665555433 3488999
Q ss_pred CCCCcEEEeecCCCCCCCCCcceEEEEEEeCCCcEEEEEcCCCCCCCCeEEEEEccCCc
Q 005043 332 ILKGEWSVAITSPSSSVTSNKGFTLVLVQHKEKDFLVAFGGIKKEPSNQVEVLSIEKNE 390 (717)
Q Consensus 332 ~~t~~W~~l~~~p~~~~~~r~g~s~v~v~~~~~~~I~v~GG~~~~~~n~v~vyd~~~~e 390 (717)
..+.+ .+...... ......+.+.. ++.+++.||.++ .|-++|+....
T Consensus 351 ~~~~~--~v~~l~gH----~~~V~~l~~sp--dg~~l~S~s~D~----tvriWdv~~~~ 397 (420)
T 4gga_A 351 YPTMA--KVAELKGH----TSRVLSLTMSP--DGATVASAAADE----TLRLWRCFELD 397 (420)
T ss_dssp TTTCC--EEEEECCC----SSCEEEEEECT--TSSCEEEEETTT----EEEEECCSCSS
T ss_pred CCCCc--EEEEEcCC----CCCEEEEEEcC--CCCEEEEEecCC----eEEEEECCCCC
Confidence 87754 33222211 11122333332 444667777643 57777775543
No 147
>1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1
Probab=95.36 E-value=2.9 Score=44.16 Aligned_cols=196 Identities=14% Similarity=0.093 Sum_probs=93.8
Q ss_pred CCEEEEEcccCCCCCcccEEEEEcCCCceEEccccccCCCCCCCCCCCcccceEEEEE-CCEEEEEeccCCCCCCceEEE
Q 005043 98 GNKMIVVGGESGNGLLDDVQVLNFDRFSWTAASSKLYLSPSSLPLKIPACRGHSLISW-GKKVLLVGGKTDSGSDRVSVW 176 (717)
Q Consensus 98 ~~~lyV~GG~~~~~~~~~v~~yd~~t~~W~~l~~~~~~~~~~~~~~~p~r~~hs~v~~-~~~Iyv~GG~~~~~~~~~~v~ 176 (717)
+++.++.|+.++ .+.+||+.+..-...-. .....-.+++.. ++..++.|+.+ ..+.
T Consensus 134 dg~~l~s~~~d~-----~i~iwd~~~~~~~~~~~------------~h~~~v~~~~~~p~~~~l~s~s~d------~~v~ 190 (393)
T 1erj_A 134 DGKFLATGAEDR-----LIRIWDIENRKIVMILQ------------GHEQDIYSLDYFPSGDKLVSGSGD------RTVR 190 (393)
T ss_dssp TSSEEEEEETTS-----CEEEEETTTTEEEEEEC------------CCSSCEEEEEECTTSSEEEEEETT------SEEE
T ss_pred CCCEEEEEcCCC-----eEEEEECCCCcEEEEEc------------cCCCCEEEEEEcCCCCEEEEecCC------CcEE
Confidence 566777777653 58899998765433211 111111233332 45566666653 2688
Q ss_pred EEECCCCcEEEeeecCCCCCCceeeEEEEE--CCEEEEEccccCCCCCcCcEEEEEcCCCceEec-cCCCC--CCCCCcc
Q 005043 177 TFDTETECWSVVEAKGDIPVARSGHTVVRA--SSVLILFGGEDGKRRKLNDLHMFDLKSLTWLPL-HCTGT--GPSPRSN 251 (717)
Q Consensus 177 ~yD~~t~~W~~l~~~g~~P~~R~~hs~~~~--~~~Lyv~GG~~~~~~~~~~v~~yD~~t~~W~~l-~~~g~--~P~~R~~ 251 (717)
+||+.+......-. ... ...+++.. ++.+++.|+.++ .+.+||+.+..-... ..... ......-
T Consensus 191 iwd~~~~~~~~~~~---~~~--~v~~~~~~~~~~~~l~~~s~d~------~v~iwd~~~~~~~~~~~~~~~~~~~h~~~v 259 (393)
T 1erj_A 191 IWDLRTGQCSLTLS---IED--GVTTVAVSPGDGKYIAAGSLDR------AVRVWDSETGFLVERLDSENESGTGHKDSV 259 (393)
T ss_dssp EEETTTTEEEEEEE---CSS--CEEEEEECSTTCCEEEEEETTS------CEEEEETTTCCEEEEEC------CCCSSCE
T ss_pred EEECCCCeeEEEEE---cCC--CcEEEEEECCCCCEEEEEcCCC------cEEEEECCCCcEEEeecccccCCCCCCCCE
Confidence 89998877543321 111 11223332 567888887654 378889877653321 10000 0011111
Q ss_pred cEEEEECCcEEEEEcCCCCCCCCCeEEEEECCCCcEEEeecC---CC-----CCCCCcceEEEE-ECCEEEEEecCCCCC
Q 005043 252 HVAALYDDKNLLIFGGSSKSKTLNDLYSLDFETMIWTRIKIR---GF-----HPSPRAGCCGVL-CGTKWYIAGGGSRKK 322 (717)
Q Consensus 252 ~aa~~~~~~~lyV~GG~~~~~~~ndv~~yd~~t~~W~~v~~~---g~-----~P~~R~~~sav~-~~~~IyV~GG~~~~~ 322 (717)
.+++...+..+++.|+.++ .|..||+.+..-...... +. ......-.+++. -++.+++.|+.++
T Consensus 260 ~~v~~~~~g~~l~s~s~d~-----~v~~wd~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~sgs~D~-- 332 (393)
T 1erj_A 260 YSVVFTRDGQSVVSGSLDR-----SVKLWNLQNANNKSDSKTPNSGTCEVTYIGHKDFVLSVATTQNDEYILSGSKDR-- 332 (393)
T ss_dssp EEEEECTTSSEEEEEETTS-----EEEEEEC---------------CEEEEEECCSSCEEEEEECGGGCEEEEEETTS--
T ss_pred EEEEECCCCCEEEEEeCCC-----EEEEEECCCCCCcccccCCCCCcceEEEecccCcEEEEEECCCCCEEEEEeCCC--
Confidence 2233333333667777653 488888765322111000 00 000001111222 1466677777553
Q ss_pred ccCeEEEEECCCCcE
Q 005043 323 RHAETLIFDILKGEW 337 (717)
Q Consensus 323 ~~~dv~~yD~~t~~W 337 (717)
.+.+||+.+..-
T Consensus 333 ---~v~iwd~~~~~~ 344 (393)
T 1erj_A 333 ---GVLFWDKKSGNP 344 (393)
T ss_dssp ---EEEEEETTTCCE
T ss_pred ---eEEEEECCCCeE
Confidence 488999887653
No 148
>1yiq_A Quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM; 2.20A {Pseudomonas putida}
Probab=95.35 E-value=4 Score=47.28 Aligned_cols=123 Identities=15% Similarity=0.077 Sum_probs=68.6
Q ss_pred EEECCEEEEEeccCCCCCCceEEEEEECCCCc--EEEeeecCCC--C---CCceeeEEEEECCEEEEEccccCCCCCcCc
Q 005043 153 ISWGKKVLLVGGKTDSGSDRVSVWTFDTETEC--WSVVEAKGDI--P---VARSGHTVVRASSVLILFGGEDGKRRKLND 225 (717)
Q Consensus 153 v~~~~~Iyv~GG~~~~~~~~~~v~~yD~~t~~--W~~l~~~g~~--P---~~R~~hs~~~~~~~Lyv~GG~~~~~~~~~~ 225 (717)
++.++.||+.+.. ..++.+|..|++ |+.-...... + ......+.++.+++||+... -..
T Consensus 67 ~v~~g~vyv~~~~-------~~v~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~g~v~v~~~-------dg~ 132 (689)
T 1yiq_A 67 IVVDGVMYTTGPF-------SVVYALDARDGRLIWKYDPQSDRHRAGEACCDAVNRGVAVWKGKVYVGVL-------DGR 132 (689)
T ss_dssp EEETTEEEEECGG-------GCEEEEETTTCCEEEEECCCCCGGGGGGCTTCSCCCCCEEETTEEEEECT-------TSE
T ss_pred EEECCEEEEEcCC-------CeEEEEECCCCceeEEEcCCCCccccccccccCCCCccEEECCEEEEEcc-------CCE
Confidence 4679999998653 259999998765 9864321100 0 00112234567888888642 246
Q ss_pred EEEEEcCCCc--eEeccCCCCCCCCCcccEEEEECCcEEEEEcCCCCCCCCCeEEEEECCCCc--EEEe
Q 005043 226 LHMFDLKSLT--WLPLHCTGTGPSPRSNHVAALYDDKNLLIFGGSSKSKTLNDLYSLDFETMI--WTRI 290 (717)
Q Consensus 226 v~~yD~~t~~--W~~l~~~g~~P~~R~~~aa~~~~~~~lyV~GG~~~~~~~ndv~~yd~~t~~--W~~v 290 (717)
++.+|..+++ |+.-.............+.++.++. +|+-.+......-..++.||..+++ |+.-
T Consensus 133 l~AlDa~TG~~~W~~~~~~~~~~~~~~~~sP~v~~g~-v~vg~~~~~~~~~g~v~a~D~~tG~~~W~~~ 200 (689)
T 1yiq_A 133 LEAIDAKTGQRAWSVDTRADHKRSYTITGAPRVVNGK-VVIGNGGAEFGVRGYVTAYDAETGKEAWRFY 200 (689)
T ss_dssp EEEEETTTCCEEEEEECCSCTTSCCBCCSCCEEETTE-EEECCBCTTTCCBCEEEEEETTTCCEEEEEE
T ss_pred EEEEECCCCCEeeeecCcCCCCCCccccCCcEEECCE-EEEEeCCCccCCCCEEEEEECCCCcEEEEec
Confidence 8999998775 8765310010111112233445655 5553222112234579999998876 8764
No 149
>2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae}
Probab=95.33 E-value=0.31 Score=51.32 Aligned_cols=240 Identities=12% Similarity=0.105 Sum_probs=116.4
Q ss_pred CCEEEEEcccCCCCCcccEEEEEcCCC--ceEEccccccCCCCCCCCCCCcccceEEEEE--CCEEEEEeccCCCCCCce
Q 005043 98 GNKMIVVGGESGNGLLDDVQVLNFDRF--SWTAASSKLYLSPSSLPLKIPACRGHSLISW--GKKVLLVGGKTDSGSDRV 173 (717)
Q Consensus 98 ~~~lyV~GG~~~~~~~~~v~~yd~~t~--~W~~l~~~~~~~~~~~~~~~p~r~~hs~v~~--~~~Iyv~GG~~~~~~~~~ 173 (717)
++.+++.|+.++ .+.+||+.+. ....+... ......-.+++.. ++.+++.|+.+.
T Consensus 78 ~~~~l~~~~~dg-----~v~vw~~~~~~~~~~~~~~~----------~~h~~~v~~~~~~~~~~~~l~s~~~dg------ 136 (416)
T 2pm9_A 78 NNKIIAGALDNG-----SLELYSTNEANNAINSMARF----------SNHSSSVKTVKFNAKQDNVLASGGNNG------ 136 (416)
T ss_dssp SSSCEEEEESSS-----CEEEECCSSTTSCCCEEEEC----------CCSSSCCCEEEECSSSTTBEEEECSSS------
T ss_pred CCCeEEEEccCC-----eEEEeecccccccccchhhc----------cCCccceEEEEEcCCCCCEEEEEcCCC------
Confidence 455666776543 5788888761 11111110 0111111233333 266777777532
Q ss_pred EEEEEECCCCc------EEEeeecCCCCCCceeeEEEEE-C-CEEEEEccccCCCCCcCcEEEEEcCCCceEeccCCCCC
Q 005043 174 SVWTFDTETEC------WSVVEAKGDIPVARSGHTVVRA-S-SVLILFGGEDGKRRKLNDLHMFDLKSLTWLPLHCTGTG 245 (717)
Q Consensus 174 ~v~~yD~~t~~------W~~l~~~g~~P~~R~~hs~~~~-~-~~Lyv~GG~~~~~~~~~~v~~yD~~t~~W~~l~~~g~~ 245 (717)
.+.+||+.+.. -..... ........-.+++.. + +.+++.|+.+ ..+.+||+.+.+....- ..
T Consensus 137 ~v~iwd~~~~~~~~~~~~~~~~~-~~~~~~~~v~~~~~~~~~~~~l~~~~~d------g~v~iwd~~~~~~~~~~---~~ 206 (416)
T 2pm9_A 137 EIFIWDMNKCTESPSNYTPLTPG-QSMSSVDEVISLAWNQSLAHVFASAGSS------NFASIWDLKAKKEVIHL---SY 206 (416)
T ss_dssp CEEBCBTTTTSSCTTTCCCBCCC-CSCCSSCCCCEEEECSSCTTEEEEESSS------SCEEEEETTTTEEEEEE---CC
T ss_pred eEEEEECCCCccccccccccccc-cccCCCCCeeEEEeCCCCCcEEEEEcCC------CCEEEEECCCCCcceEE---ec
Confidence 58888887764 111100 001111122233333 2 5677777654 34889999887644332 11
Q ss_pred CC-----CCcccEEEEECC-cEEEEEcCCCCCCCCCeEEEEECCCCcEEEeecCCCCC-CCCcceEEEEE---CCEEEEE
Q 005043 246 PS-----PRSNHVAALYDD-KNLLIFGGSSKSKTLNDLYSLDFETMIWTRIKIRGFHP-SPRAGCCGVLC---GTKWYIA 315 (717)
Q Consensus 246 P~-----~R~~~aa~~~~~-~~lyV~GG~~~~~~~ndv~~yd~~t~~W~~v~~~g~~P-~~R~~~sav~~---~~~IyV~ 315 (717)
+. ...-.+++...+ ..+++.|+.++. ...+.+||+.+..- .+... . ........+.+ ++.+++.
T Consensus 207 ~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~--~~~i~~~d~~~~~~-~~~~~---~~~~~~~v~~~~~s~~~~~~l~s 280 (416)
T 2pm9_A 207 TSPNSGIKQQLSVVEWHPKNSTRVATATGSDN--DPSILIWDLRNANT-PLQTL---NQGHQKGILSLDWCHQDEHLLLS 280 (416)
T ss_dssp CCCSSCCCCCEEEEEECSSCTTEEEEEECCSS--SCCCCEEETTSTTS-CSBCC---CSCCSSCEEEEEECSSCSSCEEE
T ss_pred cccccccCCceEEEEECCCCCCEEEEEECCCC--CceEEEEeCCCCCC-CcEEe---ecCccCceeEEEeCCCCCCeEEE
Confidence 11 122223333333 236777765431 12478899876431 11111 1 11112222332 5778888
Q ss_pred ecCCCCCccCeEEEEECCCCcEEEeecCCCCCCCCCcceEEEEEEeCCCcEEEEEcCCCCCCCCeEEEEEccCCc
Q 005043 316 GGGSRKKRHAETLIFDILKGEWSVAITSPSSSVTSNKGFTLVLVQHKEKDFLVAFGGIKKEPSNQVEVLSIEKNE 390 (717)
Q Consensus 316 GG~~~~~~~~dv~~yD~~t~~W~~l~~~p~~~~~~r~g~s~v~v~~~~~~~I~v~GG~~~~~~n~v~vyd~~~~e 390 (717)
|+.++ .+.+||+.+.+-........ .....+.+.. ++..+++.|+.++ .|.+||+....
T Consensus 281 ~~~dg-----~v~~wd~~~~~~~~~~~~~~------~~v~~~~~s~-~~~~~l~s~~~d~----~i~iw~~~~~~ 339 (416)
T 2pm9_A 281 SGRDN-----TVLLWNPESAEQLSQFPARG------NWCFKTKFAP-EAPDLFACASFDN----KIEVQTLQNLT 339 (416)
T ss_dssp EESSS-----EEEEECSSSCCEEEEEECSS------SCCCCEEECT-TCTTEEEECCSSS----EEEEEESCCCC
T ss_pred EeCCC-----CEEEeeCCCCccceeecCCC------CceEEEEECC-CCCCEEEEEecCC----cEEEEEccCCC
Confidence 87653 48899988765433221111 1112233322 2225777777643 58899987765
No 150
>3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A
Probab=95.31 E-value=2.7 Score=42.08 Aligned_cols=194 Identities=11% Similarity=0.117 Sum_probs=91.5
Q ss_pred CCEEEEEcccCCCCCcccEEEEEcCCC--ceEEccccccCCCCCCCCCCCcccceEEEEE---CCEEEEEeccCCCCCCc
Q 005043 98 GNKMIVVGGESGNGLLDDVQVLNFDRF--SWTAASSKLYLSPSSLPLKIPACRGHSLISW---GKKVLLVGGKTDSGSDR 172 (717)
Q Consensus 98 ~~~lyV~GG~~~~~~~~~v~~yd~~t~--~W~~l~~~~~~~~~~~~~~~p~r~~hs~v~~---~~~Iyv~GG~~~~~~~~ 172 (717)
++.+++.|+.++ .+.+||+.+. .|...... ......-.+++.. ++.+++.|+.+.
T Consensus 22 ~~~~l~~~~~dg-----~i~iw~~~~~~~~~~~~~~~----------~~~~~~v~~~~~~~~~d~~~l~s~~~dg----- 81 (351)
T 3f3f_A 22 YGRHVATCSSDQ-----HIKVFKLDKDTSNWELSDSW----------RAHDSSIVAIDWASPEYGRIIASASYDK----- 81 (351)
T ss_dssp SSSEEEEEETTS-----EEEEEEECSSSCCEEEEEEE----------ECCSSCEEEEEECCGGGCSEEEEEETTS-----
T ss_pred CCCEEEEeeCCC-----eEEEEECCCCCCcceeccee----------ccCCCcEEEEEEcCCCCCCEEEEEcCCC-----
Confidence 455666676543 5777777643 44443321 0111111233333 267777877642
Q ss_pred eEEEEEECCCC-------cEEEeeecCCCCCCceeeEEEEE-C--CEEEEEccccCCCCCcCcEEEEEcCCCc----eEe
Q 005043 173 VSVWTFDTETE-------CWSVVEAKGDIPVARSGHTVVRA-S--SVLILFGGEDGKRRKLNDLHMFDLKSLT----WLP 238 (717)
Q Consensus 173 ~~v~~yD~~t~-------~W~~l~~~g~~P~~R~~hs~~~~-~--~~Lyv~GG~~~~~~~~~~v~~yD~~t~~----W~~ 238 (717)
.+.+||+.+. .|..+.... .....-.+++.. + +.+++.|+.+ ..+.+||+.+.. |..
T Consensus 82 -~v~vwd~~~~~~~~~~~~~~~~~~~~--~~~~~v~~~~~~~~~~~~~l~~~~~d------g~v~iwd~~~~~~~~~~~~ 152 (351)
T 3f3f_A 82 -TVKLWEEDPDQEECSGRRWNKLCTLN--DSKGSLYSVKFAPAHLGLKLACLGND------GILRLYDALEPSDLRSWTL 152 (351)
T ss_dssp -CEEEEEECTTSCTTSSCSEEEEEEEC--CCSSCEEEEEECCGGGCSEEEEEETT------CEEEEEECSSTTCTTCCEE
T ss_pred -eEEEEecCCCcccccccCcceeeeec--ccCCceeEEEEcCCCCCcEEEEecCC------CcEEEecCCChHHhccccc
Confidence 4777777653 344443211 111112233333 2 5667777644 347888886553 221
Q ss_pred c---cCCCCCC--CCCcccEEEEEC----CcEEEEEcCCCCCCCCCeEEEEECCCCcEEEeecCCCCCCCCcc-eEEEEE
Q 005043 239 L---HCTGTGP--SPRSNHVAALYD----DKNLLIFGGSSKSKTLNDLYSLDFETMIWTRIKIRGFHPSPRAG-CCGVLC 308 (717)
Q Consensus 239 l---~~~g~~P--~~R~~~aa~~~~----~~~lyV~GG~~~~~~~ndv~~yd~~t~~W~~v~~~g~~P~~R~~-~sav~~ 308 (717)
. ......+ ......++.... +. +++.|+.++ .+..++.....+..+... +..... .+++..
T Consensus 153 ~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~-~l~~~~~~~-----~~~~~~~~~~~~~~~~~~---~~h~~~i~~~~~~ 223 (351)
T 3f3f_A 153 TSEMKVLSIPPANHLQSDFCLSWCPSRFSPE-KLAVSALEQ-----AIIYQRGKDGKLHVAAKL---PGHKSLIRSISWA 223 (351)
T ss_dssp EEEEESCSCCCSSCSCCCEEEEECCCSSSCC-EEEEEETTE-----EEEEEECTTSCEEEEEEC---CCCCSCEEEEEEC
T ss_pred cccccccccccCCcccceeEEEeccCCCCCc-EEEEecCCC-----cEEEEccCCCceeeeeec---CCCCcceeEEEEC
Confidence 0 0000111 111112222222 44 666666543 355566666666555443 111222 233333
Q ss_pred -CC----EEEEEecCCCCCccCeEEEEECCC
Q 005043 309 -GT----KWYIAGGGSRKKRHAETLIFDILK 334 (717)
Q Consensus 309 -~~----~IyV~GG~~~~~~~~dv~~yD~~t 334 (717)
++ .+++.|+.++. +.+||+.+
T Consensus 224 p~~~~~~~~l~s~~~dg~-----i~iwd~~~ 249 (351)
T 3f3f_A 224 PSIGRWYQLIATGCKDGR-----IRIFKITE 249 (351)
T ss_dssp CCSSCSSEEEEEEETTSC-----EEEEEEEE
T ss_pred CCCCCcceEEEEEcCCCe-----EEEEeCCC
Confidence 33 78888886654 67777654
No 151
>3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe}
Probab=95.30 E-value=0.33 Score=50.60 Aligned_cols=203 Identities=12% Similarity=0.013 Sum_probs=85.0
Q ss_pred CCEEEEEcccCCCCCcccEEEEEcCCCc-eEEccccccCCCCCCCCCCCcccceEEEEE-CCEEEEEeccCCCCCCceEE
Q 005043 98 GNKMIVVGGESGNGLLDDVQVLNFDRFS-WTAASSKLYLSPSSLPLKIPACRGHSLISW-GKKVLLVGGKTDSGSDRVSV 175 (717)
Q Consensus 98 ~~~lyV~GG~~~~~~~~~v~~yd~~t~~-W~~l~~~~~~~~~~~~~~~p~r~~hs~v~~-~~~Iyv~GG~~~~~~~~~~v 175 (717)
++.+++.|+.++ .+.+||+.+.. |...... ......-.+++.. ++.+++.|+.+. .+
T Consensus 66 ~~~~l~s~s~d~-----~v~vwd~~~~~~~~~~~~~----------~~~~~~v~~~~~~~~~~~l~~~~~d~------~i 124 (377)
T 3dwl_C 66 KSNRIVTCSQDR-----NAYVYEKRPDGTWKQTLVL----------LRLNRAATFVRWSPNEDKFAVGSGAR------VI 124 (377)
T ss_dssp TTCCEEEEETTS-----SEEEC------CCCCEEEC----------CCCSSCEEEEECCTTSSCCEEEESSS------CE
T ss_pred CCCEEEEEeCCC-----eEEEEEcCCCCceeeeeEe----------cccCCceEEEEECCCCCEEEEEecCC------eE
Confidence 456777777543 58889988876 5443321 1111111222222 466777777532 47
Q ss_pred EEEECCCCc-EEEeeecCCCCCCceeeEEEEE-CCEEEEEccccCCCCCcCcEEEEEcCCCceEeccC------------
Q 005043 176 WTFDTETEC-WSVVEAKGDIPVARSGHTVVRA-SSVLILFGGEDGKRRKLNDLHMFDLKSLTWLPLHC------------ 241 (717)
Q Consensus 176 ~~yD~~t~~-W~~l~~~g~~P~~R~~hs~~~~-~~~Lyv~GG~~~~~~~~~~v~~yD~~t~~W~~l~~------------ 241 (717)
.+||+.+.. |....... .+....-.+++.. ++.+++.|+.++ .+.+||+.+........
T Consensus 125 ~iwd~~~~~~~~~~~~~~-~~h~~~v~~~~~~~~~~~l~~~~~d~------~i~iwd~~~~~~~~~~~~~~~~~~~~~~~ 197 (377)
T 3dwl_C 125 SVCYFEQENDWWVSKHLK-RPLRSTILSLDWHPNNVLLAAGCADR------KAYVLSAYVRDVDAKPEASVWGSRLPFNT 197 (377)
T ss_dssp EECCC-----CCCCEEEC-SSCCSCEEEEEECTTSSEEEEEESSS------CEEEEEECCSSCC-CCCSCSSCSCCCEEE
T ss_pred EEEEECCcccceeeeEee-cccCCCeEEEEEcCCCCEEEEEeCCC------EEEEEEEEecccCCCccccccccccchhh
Confidence 778877654 32222100 1122222233333 456777777553 47788875433211100
Q ss_pred -CCCCCCCCcccEEEEECCcEEEEEcCCCCCCCCCeEEEEECCCCcE--EEeecCCCCCCCCcceEE-EEECCEEEEEec
Q 005043 242 -TGTGPSPRSNHVAALYDDKNLLIFGGSSKSKTLNDLYSLDFETMIW--TRIKIRGFHPSPRAGCCG-VLCGTKWYIAGG 317 (717)
Q Consensus 242 -~g~~P~~R~~~aa~~~~~~~lyV~GG~~~~~~~ndv~~yd~~t~~W--~~v~~~g~~P~~R~~~sa-v~~~~~IyV~GG 317 (717)
...+.....-.+++...+..+++.|+.++ .|.+||+.+..- ..+.... .....-.++ ..-++++++.|+
T Consensus 198 ~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~-----~i~iwd~~~~~~~~~~~~~~~--~~~~~v~~~~~s~~~~~l~~~~ 270 (377)
T 3dwl_C 198 VCAEYPSGGWVHAVGFSPSGNALAYAGHDS-----SVTIAYPSAPEQPPRALITVK--LSQLPLRSLLWANESAIVAAGY 270 (377)
T ss_dssp EEECCCCSSSEEEEEECTTSSCEEEEETTT-----EEC-CEECSTTSCEEECCCEE--CSSSCEEEEEEEETTEEEEEES
T ss_pred hhhcccCCceEEEEEECCCCCEEEEEeCCC-----cEEEEECCCCCCcceeeEeec--CCCCceEEEEEcCCCCEEEEEc
Confidence 00111111122333333333666676543 478888776542 1111110 011111222 223778777664
Q ss_pred CCCCCccCeEEEEECCCCcEEEee
Q 005043 318 GSRKKRHAETLIFDILKGEWSVAI 341 (717)
Q Consensus 318 ~~~~~~~~dv~~yD~~t~~W~~l~ 341 (717)
.+ .+.+|+.....|....
T Consensus 271 ~~------~~~~~~~~~~~~~~~~ 288 (377)
T 3dwl_C 271 NY------SPILLQGNESGWAHTR 288 (377)
T ss_dssp SS------SEEEECCCC---CCSB
T ss_pred CC------cEEEEEeCCCceEEEe
Confidence 22 3557777666666544
No 152
>1yr2_A Prolyl oligopeptidase; prolyl endopeptidase, mechanistic study, celiac sprue, hydro; 1.80A {Novosphingobium capsulatum}
Probab=95.24 E-value=1.9 Score=50.17 Aligned_cols=260 Identities=12% Similarity=0.021 Sum_probs=129.5
Q ss_pred EECCEEEEEcccCCCCCcccEEEEEcC---CCceEEccccccCCCCCCCCCCCcccceEEEEE--CCEEEEEeccCCCCC
Q 005043 96 VIGNKMIVVGGESGNGLLDDVQVLNFD---RFSWTAASSKLYLSPSSLPLKIPACRGHSLISW--GKKVLLVGGKTDSGS 170 (717)
Q Consensus 96 ~~~~~lyV~GG~~~~~~~~~v~~yd~~---t~~W~~l~~~~~~~~~~~~~~~p~r~~hs~v~~--~~~Iyv~GG~~~~~~ 170 (717)
-.|+++|.+--. +......+|+.+.. ...|..+-...... ...........+ +++.++++... .+.
T Consensus 116 pdG~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~~~~lld~~~l~-------~~~~~~~~~~~~SPDG~~la~~~~~-~G~ 186 (741)
T 1yr2_A 116 RRGASVFYSWNS-GLMNQSQLLVRPADAPVGTKGRVLLDPNTWA-------KDGATALDAWAASDDGRLLAYSVQD-GGS 186 (741)
T ss_dssp EETTEEEEEEEC-SSCSSCEEEEEETTSCTTCCCEEEECGGGCC-----------EEEEEEEECTTSSEEEEEEEE-TTC
T ss_pred EECCEEEEEEEc-CCCeEEEEEEEcCCccCCCCCEEEECHHHhc-------cCCCEEEEeEEECCCCCEEEEEEcC-CCC
Confidence 345666555322 22224578888876 67787753311100 000011122222 56655665442 233
Q ss_pred CceEEEEEECCCCcEEEeeecCCCCCCceeeEEEEECCEEEEEccccCC--------CCCcCcEEEEEcCCCceE--ecc
Q 005043 171 DRVSVWTFDTETECWSVVEAKGDIPVARSGHTVVRASSVLILFGGEDGK--------RRKLNDLHMFDLKSLTWL--PLH 240 (717)
Q Consensus 171 ~~~~v~~yD~~t~~W~~l~~~g~~P~~R~~hs~~~~~~~Lyv~GG~~~~--------~~~~~~v~~yD~~t~~W~--~l~ 240 (717)
....++++|+.++.+..... +.... ...+...++.++++..+.. ......++++++.+..-. .+.
T Consensus 187 e~~~i~v~dl~tg~~~~~~~----~~~~~-~~~~wspD~~l~~~~~~~~~~~~~~~~~~~~~~v~~~~lgt~~~~~~lv~ 261 (741)
T 1yr2_A 187 DWRTVKFVGVADGKPLADEL----KWVKF-SGLAWLGNDALLYSRFAEPKEGQAFQALNYNQTVWLHRLGTPQSADQPVF 261 (741)
T ss_dssp SEEEEEEEETTTCCEEEEEE----EEEES-CCCEESTTSEEEEEECCCC--------CCCCCEEEEEETTSCGGGCEEEE
T ss_pred ceEEEEEEECCCCCCCCccC----CCcee-ccEEEECCCEEEEEEecCcccccccccCCCCCEEEEEECCCCchhCEEEe
Confidence 34579999999998765431 11111 1222222243444333221 112456899998776521 121
Q ss_pred CCCCCCCCCcccEEEEE-CCcEEEEEcCCCCCCCCCeEEEEECCCC--c-EEEeecCCCCCCCCcceEEEEECCEEEEEe
Q 005043 241 CTGTGPSPRSNHVAALY-DDKNLLIFGGSSKSKTLNDLYSLDFETM--I-WTRIKIRGFHPSPRAGCCGVLCGTKWYIAG 316 (717)
Q Consensus 241 ~~g~~P~~R~~~aa~~~-~~~~lyV~GG~~~~~~~ndv~~yd~~t~--~-W~~v~~~g~~P~~R~~~sav~~~~~IyV~G 316 (717)
.....+......... +++.|++... ......++++.+|+.+. . |..+... .... .......++.||+..
T Consensus 262 --~~~~~~~~~~~~~~SpDG~~l~~~~~-~~~~~~~~l~~~d~~~~~~~~~~~l~~~---~~~~-~~~~~~dg~~l~~~s 334 (741)
T 1yr2_A 262 --ATPELPKRGHGASVSSDGRWVVITSS-EGTDPVNTVHVARVTNGKIGPVTALIPD---LKAQ-WDFVDGVGDQLWFVS 334 (741)
T ss_dssp --CCTTCTTCEEEEEECTTSCEEEEEEE-CTTCSCCEEEEEEEETTEECCCEEEECS---SSSC-EEEEEEETTEEEEEE
T ss_pred --ccCCCCeEEEEEEECCCCCEEEEEEE-ccCCCcceEEEEECCCCCCcccEEecCC---CCce-EEEEeccCCEEEEEE
Confidence 011112223333333 4454444433 22223578999999877 6 8888642 1111 122234577888876
Q ss_pred cCCCCCccCeEEEEECCC--CcEEEeecCCCCCCCCCcceEEEEEEeCCCcEEEEEcCCCCCCCCeEEEEEccCC
Q 005043 317 GGSRKKRHAETLIFDILK--GEWSVAITSPSSSVTSNKGFTLVLVQHKEKDFLVAFGGIKKEPSNQVEVLSIEKN 389 (717)
Q Consensus 317 G~~~~~~~~dv~~yD~~t--~~W~~l~~~p~~~~~~r~g~s~v~v~~~~~~~I~v~GG~~~~~~n~v~vyd~~~~ 389 (717)
..+ .....++.+|+.+ ..|+.+.. ... . ....+.+. ++.|++....++ ...++++++...
T Consensus 335 ~~~--~~~~~l~~~d~~~~~~~~~~l~~--~~~--~--~l~~~~~~---~~~lv~~~~~dg--~~~l~~~~~~g~ 396 (741)
T 1yr2_A 335 GDG--APLKKIVRVDLSGSTPRFDTVVP--ESK--D--NLESVGIA---GNRLFASYIHDA--KSQVLAFDLDGK 396 (741)
T ss_dssp CTT--CTTCEEEEEECSSSSCEEEEEEC--CCS--S--EEEEEEEE---BTEEEEEEEETT--EEEEEEEETTSC
T ss_pred CCC--CCCCEEEEEeCCCCccccEEEec--CCC--C--eEEEEEEE---CCEEEEEEEECC--EEEEEEEeCCCC
Confidence 542 2246799999988 57998762 211 1 11122222 556766655433 347888887543
No 153
>4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis}
Probab=95.08 E-value=0.25 Score=52.07 Aligned_cols=206 Identities=16% Similarity=0.166 Sum_probs=90.5
Q ss_pred CCEEEEEeccCCCCCCceEEEEEECCCCcEEEeeecCCCCCCceeeEEEEECCEEEEEccccCCCCCcCcEEEEEcCCCc
Q 005043 156 GKKVLLVGGKTDSGSDRVSVWTFDTETECWSVVEAKGDIPVARSGHTVVRASSVLILFGGEDGKRRKLNDLHMFDLKSLT 235 (717)
Q Consensus 156 ~~~Iyv~GG~~~~~~~~~~v~~yD~~t~~W~~l~~~g~~P~~R~~hs~~~~~~~Lyv~GG~~~~~~~~~~v~~yD~~t~~ 235 (717)
++++++.|+..........++.|+..+..-............-.-.+++...+.-++.|+.+ ..+.+||+.+.+
T Consensus 53 DG~~las~s~d~~~~wd~~v~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~s~d~~~l~~s~d------g~v~lWd~~~~~ 126 (357)
T 4g56_B 53 DGALLLAASSLSSRTWGGSIWVFKDPEGAPNESLCTAGVQTEAGVTDVAWVSEKGILVASDS------GAVELWEILEKE 126 (357)
T ss_dssp SSCEEEEEECSSSSSCCEEEEEESSCC---CGGGCSEEEECSSCEEEEEEETTTEEEEEETT------SCEEEC------
T ss_pred CCCEEEEEcCCCCccccCeEEEEECCCCCcceeEecccCCCCCCEEEEEEcCCCCEEEEECC------CEEEEeeccccc
Confidence 67888887754322223468888766543110000000000001123333443334455533 247788887654
Q ss_pred eEeccCCCCCCCCCcccEEEEECCcEEEEEcCCCCCCCCCeEEEEECCCCcEEEeecCCCCCCCCcceEEEEE--CCEEE
Q 005043 236 WLPLHCTGTGPSPRSNHVAALYDDKNLLIFGGSSKSKTLNDLYSLDFETMIWTRIKIRGFHPSPRAGCCGVLC--GTKWY 313 (717)
Q Consensus 236 W~~l~~~g~~P~~R~~~aa~~~~~~~lyV~GG~~~~~~~ndv~~yd~~t~~W~~v~~~g~~P~~R~~~sav~~--~~~Iy 313 (717)
-..............-.+++...+..+++.|+.++ .|.+||+.+..-...-.. ......+++.. ++.++
T Consensus 127 ~~~~~~~~~~~h~~~V~~v~~spdg~~l~sgs~dg-----~v~iwd~~~~~~~~~~~~----h~~~v~~v~~s~~~~~~~ 197 (357)
T 4g56_B 127 SLLVNKFAKYEHDDIVKTLSVFSDGTQAVSGGKDF-----SVKVWDLSQKAVLKSYNA----HSSEVNCVAACPGKDTIF 197 (357)
T ss_dssp --CCCCEEECCCSSCEEEEEECSSSSEEEEEETTS-----CEEEEETTTTEEEEEECC----CSSCEEEEEECTTCSSCE
T ss_pred eeEEEeeccCCCCCCEEEEEECCCCCEEEEEeCCC-----eEEEEECCCCcEEEEEcC----CCCCEEEEEEccCCCcee
Confidence 32211000001111122333344433677777654 489999988764433211 11111222222 34577
Q ss_pred EEecCCCCCccCeEEEEECCCCcEEEeecCCCCCCCCCcceEEEEEEeCCCcEEEEEcCCCCCCCCeEEEEEccCCc
Q 005043 314 IAGGGSRKKRHAETLIFDILKGEWSVAITSPSSSVTSNKGFTLVLVQHKEKDFLVAFGGIKKEPSNQVEVLSIEKNE 390 (717)
Q Consensus 314 V~GG~~~~~~~~dv~~yD~~t~~W~~l~~~p~~~~~~r~g~s~v~v~~~~~~~I~v~GG~~~~~~n~v~vyd~~~~e 390 (717)
+.||.++. +.+||+.+..-.... . .........++.+. +.++.+++.|+.++ .|.+||+.+.+
T Consensus 198 ~s~~~dg~-----v~~wd~~~~~~~~~~--~--~~~~~~~v~~v~~s-p~~~~~la~g~~d~----~i~~wd~~~~~ 260 (357)
T 4g56_B 198 LSCGEDGR-----ILLWDTRKPKPATRI--D--FCASDTIPTSVTWH-PEKDDTFACGDETG----NVSLVNIKNPD 260 (357)
T ss_dssp EEEETTSC-----EEECCTTSSSCBCBC--C--CTTCCSCEEEEEEC-TTSTTEEEEEESSS----CEEEEESSCGG
T ss_pred eeeccCCc-----eEEEECCCCceeeee--e--eccccccccchhhh-hcccceEEEeeccc----ceeEEECCCCc
Confidence 77876544 888888775432211 1 11111122333332 33455777777543 57889987654
No 154
>1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A*
Probab=95.06 E-value=2.1 Score=48.08 Aligned_cols=235 Identities=11% Similarity=0.095 Sum_probs=117.2
Q ss_pred CCEEEEEcccCCCCCcccEEEEEcCCCceEEccccccCCCCCCCCCCCcccceEEEEE--CCEEEEEeccCCCCCCceEE
Q 005043 98 GNKMIVVGGESGNGLLDDVQVLNFDRFSWTAASSKLYLSPSSLPLKIPACRGHSLISW--GKKVLLVGGKTDSGSDRVSV 175 (717)
Q Consensus 98 ~~~lyV~GG~~~~~~~~~v~~yd~~t~~W~~l~~~~~~~~~~~~~~~p~r~~hs~v~~--~~~Iyv~GG~~~~~~~~~~v 175 (717)
++++|+.+..+ +.+.++|..+.+-...-+. .. .-|+++.. +..+|+.+. . +.|
T Consensus 148 ~~~~~vs~~~d-----~~V~v~D~~t~~~~~~i~~----------g~---~~~~v~~spdg~~l~v~~~-d------~~V 202 (543)
T 1nir_A 148 PNLFSVTLRDA-----GQIALVDGDSKKIVKVIDT----------GY---AVHISRMSASGRYLLVIGR-D------ARI 202 (543)
T ss_dssp GGEEEEEEGGG-----TEEEEEETTTCCEEEEEEC----------ST---TEEEEEECTTSCEEEEEET-T------SEE
T ss_pred CCEEEEEEcCC-----CeEEEEECCCceEEEEEec----------Cc---ccceEEECCCCCEEEEECC-C------CeE
Confidence 57788887644 3688899988754322110 01 13444343 345666543 1 479
Q ss_pred EEEEC--CCCcEEEeeecCCCCCCceeeEEEEE-----CC-EEEEEccccCCCCCcCcEEEEEcCCCceEe-ccCCCC--
Q 005043 176 WTFDT--ETECWSVVEAKGDIPVARSGHTVVRA-----SS-VLILFGGEDGKRRKLNDLHMFDLKSLTWLP-LHCTGT-- 244 (717)
Q Consensus 176 ~~yD~--~t~~W~~l~~~g~~P~~R~~hs~~~~-----~~-~Lyv~GG~~~~~~~~~~v~~yD~~t~~W~~-l~~~g~-- 244 (717)
.+||+ .+.+-... ++....-+.+++. ++ .+|+. .+. .+.+.+||..+.+-.. +...+.
T Consensus 203 ~v~D~~~~t~~~~~~-----i~~g~~p~~va~sp~~~~dg~~l~v~-~~~-----~~~v~v~D~~t~~~~~~i~~~g~~~ 271 (543)
T 1nir_A 203 DMIDLWAKEPTKVAE-----IKIGIEARSVESSKFKGYEDRYTIAG-AYW-----PPQFAIMDGETLEPKQIVSTRGMTV 271 (543)
T ss_dssp EEEETTSSSCEEEEE-----EECCSEEEEEEECCSTTCTTTEEEEE-EEE-----SSEEEEEETTTCCEEEEEECCEECS
T ss_pred EEEECcCCCCcEEEE-----EecCCCcceEEeCCCcCCCCCEEEEE-Ecc-----CCeEEEEeccccccceeecccCccc
Confidence 99999 66553221 1222223344443 44 45544 332 2457888987765332 221110
Q ss_pred -----CCCCCcccEEEEECCcEEEEEcCCCCCCCCCeEEEEECCCCcEEEeecCCCCCCCCcceEEEEE-CCE-EEEEec
Q 005043 245 -----GPSPRSNHVAALYDDKNLLIFGGSSKSKTLNDLYSLDFETMIWTRIKIRGFHPSPRAGCCGVLC-GTK-WYIAGG 317 (717)
Q Consensus 245 -----~P~~R~~~aa~~~~~~~lyV~GG~~~~~~~ndv~~yd~~t~~W~~v~~~g~~P~~R~~~sav~~-~~~-IyV~GG 317 (717)
.|.+|....+...++..+|+.... .+.|+.+|..+..-..+... +..+.-+.++.. +++ +|+.+.
T Consensus 272 ~~~~~~~~~~v~~i~~s~~~~~~~vs~~~-----~g~i~vvd~~~~~~l~~~~i---~~~~~~~~~~~spdg~~l~va~~ 343 (543)
T 1nir_A 272 DTQTYHPEPRVAAIIASHEHPEFIVNVKE-----TGKVLLVNYKDIDNLTVTSI---GAAPFLHDGGWDSSHRYFMTAAN 343 (543)
T ss_dssp SSCCEESCCCEEEEEECSSSSEEEEEETT-----TTEEEEEECTTSSSCEEEEE---ECCSSCCCEEECTTSCEEEEEEG
T ss_pred CccccccCCceEEEEECCCCCEEEEEECC-----CCeEEEEEecCCCcceeEEe---ccCcCccCceECCCCCEEEEEec
Confidence 123333333333345545554432 25799999876432111111 122233333332 444 555543
Q ss_pred CCCCCccCeEEEEECCCCcEEEeecCCCCCCCCCcceEEEEEEeCCCcEEEEEcCCCCCCCCeEEEEEccC
Q 005043 318 GSRKKRHAETLIFDILKGEWSVAITSPSSSVTSNKGFTLVLVQHKEKDFLVAFGGIKKEPSNQVEVLSIEK 388 (717)
Q Consensus 318 ~~~~~~~~dv~~yD~~t~~W~~l~~~p~~~~~~r~g~s~v~v~~~~~~~I~v~GG~~~~~~n~v~vyd~~~ 388 (717)
.+ +.|.++|+.+.+-...... ...|.+..+. .. .+++++.+|+.+..+. +.|-++|..+
T Consensus 344 ~~-----~~v~v~D~~tg~l~~~i~~-g~~ph~g~g~--~~-~~p~~g~~~~s~~~~d---~~V~v~d~~~ 402 (543)
T 1nir_A 344 NS-----NKVAVIDSKDRRLSALVDV-GKTPHPGRGA--NF-VHPKYGPVWSTSHLGD---GSISLIGTDP 402 (543)
T ss_dssp GG-----TEEEEEETTTTEEEEEEEC-SSSBCCTTCE--EE-EETTTEEEEEEEBSSS---SEEEEEECCT
T ss_pred CC-----CeEEEEECCCCeEEEeecc-CCCCCCCCCc--cc-CCCCCccEEEeccCCC---ceEEEEEeCC
Confidence 22 4588999998865543321 1222222222 22 2444567887765432 2788899877
No 155
>3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens}
Probab=95.06 E-value=0.31 Score=50.84 Aligned_cols=193 Identities=10% Similarity=0.086 Sum_probs=100.0
Q ss_pred CCEEEEEeccCCCCCCceEEEEEECCCCcEEEeeecCCCCCCceeeEEEEE-CCEEEEEccccCCCCCcCcEEEEEcCCC
Q 005043 156 GKKVLLVGGKTDSGSDRVSVWTFDTETECWSVVEAKGDIPVARSGHTVVRA-SSVLILFGGEDGKRRKLNDLHMFDLKSL 234 (717)
Q Consensus 156 ~~~Iyv~GG~~~~~~~~~~v~~yD~~t~~W~~l~~~g~~P~~R~~hs~~~~-~~~Lyv~GG~~~~~~~~~~v~~yD~~t~ 234 (717)
++.+++.||.+. .+.+||..++.|....... ......-.+++.. ++.+++.|+.++ .+.+||..+.
T Consensus 27 ~g~~las~~~D~------~i~iw~~~~~~~~~~~~~~-~~h~~~v~~~~~sp~g~~l~s~s~D~------~v~iw~~~~~ 93 (345)
T 3fm0_A 27 AGTLLASCGGDR------RIRIWGTEGDSWICKSVLS-EGHQRTVRKVAWSPCGNYLASASFDA------TTCIWKKNQD 93 (345)
T ss_dssp TSSCEEEEETTS------CEEEEEEETTEEEEEEEEC-SSCSSCEEEEEECTTSSEEEEEETTS------CEEEEEECCC
T ss_pred CCCEEEEEcCCC------eEEEEEcCCCcceeeeeec-cccCCcEEEEEECCCCCEEEEEECCC------cEEEEEccCC
Confidence 567777887642 4778888888775433210 0111122223332 467777777654 3667787777
Q ss_pred ceEeccCCCCCCCCCcccEEEEECCcEEEEEcCCCCCCCCCeEEEEECCCC-cEEEeecCCCCCCCCcceEEEEE--CCE
Q 005043 235 TWLPLHCTGTGPSPRSNHVAALYDDKNLLIFGGSSKSKTLNDLYSLDFETM-IWTRIKIRGFHPSPRAGCCGVLC--GTK 311 (717)
Q Consensus 235 ~W~~l~~~g~~P~~R~~~aa~~~~~~~lyV~GG~~~~~~~ndv~~yd~~t~-~W~~v~~~g~~P~~R~~~sav~~--~~~ 311 (717)
.+..+..... ....-.+++...+..+++.|+.++ .+.+||+.+. .+..+... .........+.+ ++.
T Consensus 94 ~~~~~~~~~~--h~~~v~~v~~sp~~~~l~s~s~D~-----~v~iwd~~~~~~~~~~~~~---~~h~~~v~~~~~~p~~~ 163 (345)
T 3fm0_A 94 DFECVTTLEG--HENEVKSVAWAPSGNLLATCSRDK-----SVWVWEVDEEDEYECVSVL---NSHTQDVKHVVWHPSQE 163 (345)
T ss_dssp -EEEEEEECC--CSSCEEEEEECTTSSEEEEEETTS-----CEEEEEECTTSCEEEEEEE---CCCCSCEEEEEECSSSS
T ss_pred CeEEEEEccC--CCCCceEEEEeCCCCEEEEEECCC-----eEEEEECCCCCCeEEEEEe---cCcCCCeEEEEECCCCC
Confidence 6654431101 111122333333333777777654 4888888654 33333322 111112222332 567
Q ss_pred EEEEecCCCCCccCeEEEEECCCCcEEEeecCCCCCCCCCcceEEEEEEeCCCcEEEEEcCCCCCCCCeEEEEEc
Q 005043 312 WYIAGGGSRKKRHAETLIFDILKGEWSVAITSPSSSVTSNKGFTLVLVQHKEKDFLVAFGGIKKEPSNQVEVLSI 386 (717)
Q Consensus 312 IyV~GG~~~~~~~~dv~~yD~~t~~W~~l~~~p~~~~~~r~g~s~v~v~~~~~~~I~v~GG~~~~~~n~v~vyd~ 386 (717)
+++.|+.++. +.+||..+..|..+...... ......+.+. .++.+++.|+.++ .|.+|+.
T Consensus 164 ~l~s~s~d~~-----i~~w~~~~~~~~~~~~~~~h----~~~v~~l~~s--p~g~~l~s~s~D~----~v~iW~~ 223 (345)
T 3fm0_A 164 LLASASYDDT-----VKLYREEEDDWVCCATLEGH----ESTVWSLAFD--PSGQRLASCSDDR----TVRIWRQ 223 (345)
T ss_dssp CEEEEETTSC-----EEEEEEETTEEEEEEEECCC----SSCEEEEEEC--TTSSEEEEEETTS----CEEEEEE
T ss_pred EEEEEeCCCc-----EEEEEecCCCEEEEEEecCC----CCceEEEEEC--CCCCEEEEEeCCC----eEEEecc
Confidence 7888876644 88899988888765432221 1122233332 2445667777654 3566664
No 156
>1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A
Probab=94.98 E-value=1.3 Score=49.07 Aligned_cols=243 Identities=12% Similarity=0.084 Sum_probs=113.5
Q ss_pred CCEEEEEcccCCCCCcccEEEEEcCCC------ceEEccccccCCCCCCCCCCCcccceEEEEE-CCEEEEEeccCCCCC
Q 005043 98 GNKMIVVGGESGNGLLDDVQVLNFDRF------SWTAASSKLYLSPSSLPLKIPACRGHSLISW-GKKVLLVGGKTDSGS 170 (717)
Q Consensus 98 ~~~lyV~GG~~~~~~~~~v~~yd~~t~------~W~~l~~~~~~~~~~~~~~~p~r~~hs~v~~-~~~Iyv~GG~~~~~~ 170 (717)
++++++.|+.++ .+.+||+.+. ....+... ......-.+++.. +++.++.||....
T Consensus 77 ~~~~l~s~~~dg-----~v~vw~~~~~~~~~~~~~~~~~~~----------~~~~~~v~~~~~s~~~~~l~~~~~~~~-- 139 (615)
T 1pgu_A 77 GSQYLCSGDESG-----KVIVWGWTFDKESNSVEVNVKSEF----------QVLAGPISDISWDFEGRRLCVVGEGRD-- 139 (615)
T ss_dssp TCCEEEEEETTS-----EEEEEEEEEEGGGTEEEEEEEEEE----------ECCSSCEEEEEECTTSSEEEEEECCSS--
T ss_pred CCCEEEEecCCC-----EEEEEeCCCCcccccccccccchh----------hcccccEEEEEEeCCCCEEEEeccCCC--
Confidence 456777777543 5788887644 23332221 0111111222222 4556666664321
Q ss_pred CceEEEEEECCCCcEEEeeecCCCCCCceeeEEEEE-CC-EEEEEccccCCCCCcCcEEEEEcCCCceEeccCCCCCCC-
Q 005043 171 DRVSVWTFDTETECWSVVEAKGDIPVARSGHTVVRA-SS-VLILFGGEDGKRRKLNDLHMFDLKSLTWLPLHCTGTGPS- 247 (717)
Q Consensus 171 ~~~~v~~yD~~t~~W~~l~~~g~~P~~R~~hs~~~~-~~-~Lyv~GG~~~~~~~~~~v~~yD~~t~~W~~l~~~g~~P~- 247 (717)
....++.||... .-..+. .....-.+++.. ++ .+++.|+.+ ..+.+||..+.+-...- . ....
T Consensus 140 ~~~~v~~~d~~~-~~~~~~-----~~~~~v~~~~~~~~~~~~l~~~~~d------~~v~vwd~~~~~~~~~~-~-~~~~~ 205 (615)
T 1pgu_A 140 NFGVFISWDSGN-SLGEVS-----GHSQRINACHLKQSRPMRSMTVGDD------GSVVFYQGPPFKFSASD-R-THHKQ 205 (615)
T ss_dssp CSEEEEETTTCC-EEEECC-----SCSSCEEEEEECSSSSCEEEEEETT------TEEEEEETTTBEEEEEE-C-SSSCT
T ss_pred CccEEEEEECCC-cceeee-----cCCccEEEEEECCCCCcEEEEEeCC------CcEEEEeCCCcceeeee-c-ccCCC
Confidence 234688887322 112221 111112223332 23 367777644 35888887765433221 0 1111
Q ss_pred CCcccEEEEECC-cEEEEEcCCCCCCCCCeEEEEECCCCcEEEeecCCCCCCCCcceEEEEECCEEEEEecCCCCCccCe
Q 005043 248 PRSNHVAALYDD-KNLLIFGGSSKSKTLNDLYSLDFETMIWTRIKIRGFHPSPRAGCCGVLCGTKWYIAGGGSRKKRHAE 326 (717)
Q Consensus 248 ~R~~~aa~~~~~-~~lyV~GG~~~~~~~ndv~~yd~~t~~W~~v~~~g~~P~~R~~~sav~~~~~IyV~GG~~~~~~~~d 326 (717)
...-.+++...+ ..+++.|+.++ .+.+||+.+......-..........-.+++..++..++.|+.+ ..
T Consensus 206 ~~~v~~~~~~~~~~~~l~~~~~dg-----~i~vwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~l~~~~~d-----~~ 275 (615)
T 1pgu_A 206 GSFVRDVEFSPDSGEFVITVGSDR-----KISCFDGKSGEFLKYIEDDQEPVQGGIFALSWLDSQKFATVGAD-----AT 275 (615)
T ss_dssp TCCEEEEEECSTTCCEEEEEETTC-----CEEEEETTTCCEEEECCBTTBCCCSCEEEEEESSSSEEEEEETT-----SE
T ss_pred CceEEEEEECCCCCCEEEEEeCCC-----eEEEEECCCCCEeEEecccccccCCceEEEEEcCCCEEEEEcCC-----Cc
Confidence 002233444444 33677776653 49999998776544321100011111122222277778888755 34
Q ss_pred EEEEECCCCcEEEeecCCCCCCCCCcceEEEEEEeCCCcEEEEEcCCCCCCCCeEEEEEccCCc
Q 005043 327 TLIFDILKGEWSVAITSPSSSVTSNKGFTLVLVQHKEKDFLVAFGGIKKEPSNQVEVLSIEKNE 390 (717)
Q Consensus 327 v~~yD~~t~~W~~l~~~p~~~~~~r~g~s~v~v~~~~~~~I~v~GG~~~~~~n~v~vyd~~~~e 390 (717)
+.+||+.+.........+.. ........+.+. ++. .++.|+.++ .+.+||+.+.+
T Consensus 276 i~~wd~~~~~~~~~~~~~~~--~~~~~~~~~~~~--~~~-~l~~~~~~g----~i~~~d~~~~~ 330 (615)
T 1pgu_A 276 IRVWDVTTSKCVQKWTLDKQ--QLGNQQVGVVAT--GNG-RIISLSLDG----TLNFYELGHDE 330 (615)
T ss_dssp EEEEETTTTEEEEEEECCTT--CGGGCEEEEEEE--ETT-EEEEEETTS----CEEEEETTEEE
T ss_pred EEEEECCCCcEEEEEcCCCC--cccCceeEEEeC--CCC-eEEEEECCC----CEEEEECCCCc
Confidence 88999987765443322211 111222223332 233 455666543 57788876543
No 157
>1kv9_A Type II quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM EPE; 1.90A {Pseudomonas putida} SCOP: a.3.1.6 b.70.1.1
Probab=94.98 E-value=2.5 Score=48.81 Aligned_cols=130 Identities=11% Similarity=0.057 Sum_probs=73.0
Q ss_pred eEEEEECCEEEEEcccCCCCCcccEEEEEcCCC--ceEEccccccCCCCCCCCCCCcccceEEEEECCEEEEEeccCCCC
Q 005043 92 HAAAVIGNKMIVVGGESGNGLLDDVQVLNFDRF--SWTAASSKLYLSPSSLPLKIPACRGHSLISWGKKVLLVGGKTDSG 169 (717)
Q Consensus 92 haav~~~~~lyV~GG~~~~~~~~~v~~yd~~t~--~W~~l~~~~~~~~~~~~~~~p~r~~hs~v~~~~~Iyv~GG~~~~~ 169 (717)
.+-++.++.||+.... ..++.+|..+. .|+.-......... .........+.++.+++||+...
T Consensus 60 ~~P~v~~g~vyv~~~~------~~v~AlD~~tG~~~W~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~v~v~~~----- 125 (668)
T 1kv9_A 60 ATPLFHDGVIYTSMSW------SRVIAVDAASGKELWRYDPEVAKVKAR---TSCCDAVNRGVALWGDKVYVGTL----- 125 (668)
T ss_dssp CCCEEETTEEEEEEGG------GEEEEEETTTCCEEEEECCCCCGGGGG---GCTTCSCCCCCEEEBTEEEEECT-----
T ss_pred cCCEEECCEEEEECCC------CeEEEEECCCChhceEECCCCCccccc---cccccCCccceEEECCEEEEEcC-----
Confidence 3445689999998652 36899998876 68875431100000 00000001234557888887642
Q ss_pred CCceEEEEEECCCCc--EEEeeecCCCCCCceeeEEEEECCEEEEEccccCCCCCcCcEEEEEcCCCc--eEec
Q 005043 170 SDRVSVWTFDTETEC--WSVVEAKGDIPVARSGHTVVRASSVLILFGGEDGKRRKLNDLHMFDLKSLT--WLPL 239 (717)
Q Consensus 170 ~~~~~v~~yD~~t~~--W~~l~~~g~~P~~R~~hs~~~~~~~Lyv~GG~~~~~~~~~~v~~yD~~t~~--W~~l 239 (717)
...++.+|..|++ |+.-.... ........+.++.++.+|+..+.... .....++.||+.+.+ |+.-
T Consensus 126 --dg~l~alD~~tG~~~W~~~~~~~-~~~~~~~~~P~v~~~~v~vg~~~~~~-~~~g~v~a~D~~tG~~~W~~~ 195 (668)
T 1kv9_A 126 --DGRLIALDAKTGKAIWSQQTTDP-AKPYSITGAPRVVKGKVIIGNGGAEY-GVRGFVSAYDADTGKLAWRFY 195 (668)
T ss_dssp --TSEEEEEETTTCCEEEEEECSCT-TSSCBCCSCCEEETTEEEECCBCTTT-CCBCEEEEEETTTCCEEEEEE
T ss_pred --CCEEEEEECCCCCEeeeeccCCC-CCcceecCCCEEECCEEEEeCCCCCc-CCCCEEEEEECCCCcEEEEec
Confidence 1369999998875 88654210 01112222345568888775332111 134679999998775 8764
No 158
>3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae}
Probab=94.97 E-value=1.4 Score=44.86 Aligned_cols=197 Identities=10% Similarity=0.025 Sum_probs=96.0
Q ss_pred CCEEEEEeccCCCCCCceEEEEEECCCCcEEEeeecCCCCCCceeeEEEEE-CCEEEEEccccCCCCCcCcEEEEEcCCC
Q 005043 156 GKKVLLVGGKTDSGSDRVSVWTFDTETECWSVVEAKGDIPVARSGHTVVRA-SSVLILFGGEDGKRRKLNDLHMFDLKSL 234 (717)
Q Consensus 156 ~~~Iyv~GG~~~~~~~~~~v~~yD~~t~~W~~l~~~g~~P~~R~~hs~~~~-~~~Lyv~GG~~~~~~~~~~v~~yD~~t~ 234 (717)
++.+++.|+.+. .+.+||+.+..-...-. .....-.+++.. ++..++.|+.+ ..+.+||+.+.
T Consensus 43 ~~~~l~~~~~dg------~i~vwd~~~~~~~~~~~----~h~~~v~~~~~~~~~~~l~s~~~d------g~i~iwd~~~~ 106 (369)
T 3zwl_B 43 EGDLLFSCSKDS------SASVWYSLNGERLGTLD----GHTGTIWSIDVDCFTKYCVTGSAD------YSIKLWDVSNG 106 (369)
T ss_dssp TSCEEEEEESSS------CEEEEETTTCCEEEEEC----CCSSCEEEEEECTTSSEEEEEETT------TEEEEEETTTC
T ss_pred CCCEEEEEeCCC------EEEEEeCCCchhhhhhh----hcCCcEEEEEEcCCCCEEEEEeCC------CeEEEEECCCC
Confidence 456666776532 58888988766433221 111112233333 45667777654 35889999877
Q ss_pred ceEeccCCCCCCCCCcccEEEEECCcEEEEEcCCCCCCCCCeEEEEECCCCc----EEEeecCCC----CCCCCcceEEE
Q 005043 235 TWLPLHCTGTGPSPRSNHVAALYDDKNLLIFGGSSKSKTLNDLYSLDFETMI----WTRIKIRGF----HPSPRAGCCGV 306 (717)
Q Consensus 235 ~W~~l~~~g~~P~~R~~~aa~~~~~~~lyV~GG~~~~~~~ndv~~yd~~t~~----W~~v~~~g~----~P~~R~~~sav 306 (717)
+....- . ....-.++....+...++.++.+.......+..||+.+.. +........ .........++
T Consensus 107 ~~~~~~---~--~~~~v~~~~~~~~~~~l~~~~~~~~~~~g~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 181 (369)
T 3zwl_B 107 QCVATW---K--SPVPVKRVEFSPCGNYFLAILDNVMKNPGSINIYEIERDSATHELTKVSEEPIHKIITHEGLDAATVA 181 (369)
T ss_dssp CEEEEE---E--CSSCEEEEEECTTSSEEEEEECCBTTBCCEEEEEEEEECTTTCCEEEECSSCSEEEECCTTCCCEEEE
T ss_pred cEEEEe---e--cCCCeEEEEEccCCCEEEEecCCccCCCCEEEEEEecCCccceeecccccceeeeccCCcCccceeEE
Confidence 654332 1 1112223334444335566554422233468888875432 222111000 00011122222
Q ss_pred EE--CCEEEEEecCCCCCccCeEEEEECCC-CcEEEeecCCCCCCCCCcceEEEEEEeCCCcEEEEEcCCCCCCCCeEEE
Q 005043 307 LC--GTKWYIAGGGSRKKRHAETLIFDILK-GEWSVAITSPSSSVTSNKGFTLVLVQHKEKDFLVAFGGIKKEPSNQVEV 383 (717)
Q Consensus 307 ~~--~~~IyV~GG~~~~~~~~dv~~yD~~t-~~W~~l~~~p~~~~~~r~g~s~v~v~~~~~~~I~v~GG~~~~~~n~v~v 383 (717)
.+ +++++++|+.++ .+.+||+.+ ..-...... .......+.+.. ++.+++.|+.++ .+.+
T Consensus 182 ~~~~~~~~l~~~~~dg-----~i~i~d~~~~~~~~~~~~~------~~~~v~~~~~~~--~~~~l~~~~~d~----~i~v 244 (369)
T 3zwl_B 182 GWSTKGKYIIAGHKDG-----KISKYDVSNNYEYVDSIDL------HEKSISDMQFSP--DLTYFITSSRDT----NSFL 244 (369)
T ss_dssp EECGGGCEEEEEETTS-----EEEEEETTTTTEEEEEEEC------CSSCEEEEEECT--TSSEEEEEETTS----EEEE
T ss_pred EEcCCCCEEEEEcCCC-----EEEEEECCCCcEeEEEEec------CCCceeEEEECC--CCCEEEEecCCc----eEEE
Confidence 22 566777776553 589999987 333222211 111223333322 344556665432 6888
Q ss_pred EEccCCc
Q 005043 384 LSIEKNE 390 (717)
Q Consensus 384 yd~~~~e 390 (717)
||+.+.+
T Consensus 245 ~d~~~~~ 251 (369)
T 3zwl_B 245 VDVSTLQ 251 (369)
T ss_dssp EETTTCC
T ss_pred EECCCCc
Confidence 9987765
No 159
>1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1
Probab=94.93 E-value=1.2 Score=47.73 Aligned_cols=149 Identities=9% Similarity=0.063 Sum_probs=79.7
Q ss_pred CCEEEEEeccCCCCCCceEEEEEECCCCcEEEeeecCCCCCCceeeEEEEE-CCEEEEEccccCCCCCcCcEEEEEcCCC
Q 005043 156 GKKVLLVGGKTDSGSDRVSVWTFDTETECWSVVEAKGDIPVARSGHTVVRA-SSVLILFGGEDGKRRKLNDLHMFDLKSL 234 (717)
Q Consensus 156 ~~~Iyv~GG~~~~~~~~~~v~~yD~~t~~W~~l~~~g~~P~~R~~hs~~~~-~~~Lyv~GG~~~~~~~~~~v~~yD~~t~ 234 (717)
++.+++.||.+. .+.+||..+......-. .. ...-.+++.. ++.+++.||.++. +.+||+.+.
T Consensus 119 ~~~~l~s~s~Dg------~i~vwd~~~~~~~~~l~---~h-~~~V~~v~~~~~~~~l~sgs~D~~------i~iwd~~~~ 182 (410)
T 1vyh_C 119 VFSVMVSASEDA------TIKVWDYETGDFERTLK---GH-TDSVQDISFDHSGKLLASCSADMT------IKLWDFQGF 182 (410)
T ss_dssp SSSEEEEEESSS------CEEEEETTTCCCCEEEC---CC-SSCEEEEEECTTSSEEEEEETTSC------CCEEETTSS
T ss_pred CCCEEEEEeCCC------eEEEEECCCCcEEEEEe---cc-CCcEEEEEEcCCCCEEEEEeCCCe------EEEEeCCCC
Confidence 456777777642 58888988765432211 11 1111223332 4677888876543 567787665
Q ss_pred ceEeccCCCCCCCCCcccEEEEECCcEEEEEcCCCCCCCCCeEEEEECCCCcEEEeecCCCCCCCCcceEEEEE--CCEE
Q 005043 235 TWLPLHCTGTGPSPRSNHVAALYDDKNLLIFGGSSKSKTLNDLYSLDFETMIWTRIKIRGFHPSPRAGCCGVLC--GTKW 312 (717)
Q Consensus 235 ~W~~l~~~g~~P~~R~~~aa~~~~~~~lyV~GG~~~~~~~ndv~~yd~~t~~W~~v~~~g~~P~~R~~~sav~~--~~~I 312 (717)
.-...- . .....-.+++...+...++.|+.++ .+..||+.++.-...-.. ......++.. ++.+
T Consensus 183 ~~~~~~---~-~h~~~V~~v~~~p~~~~l~s~s~D~-----~i~~wd~~~~~~~~~~~~-----h~~~v~~~~~~~~g~~ 248 (410)
T 1vyh_C 183 ECIRTM---H-GHDHNVSSVSIMPNGDHIVSASRDK-----TIKMWEVQTGYCVKTFTG-----HREWVRMVRPNQDGTL 248 (410)
T ss_dssp CEEECC---C-CCSSCEEEEEECSSSSEEEEEETTS-----EEEEEETTTCCEEEEEEC-----CSSCEEEEEECTTSSE
T ss_pred ceeEEE---c-CCCCCEEEEEEeCCCCEEEEEeCCC-----eEEEEECCCCcEEEEEeC-----CCccEEEEEECCCCCE
Confidence 432211 0 1111122333333333677777653 589999987764322111 1111222222 5778
Q ss_pred EEEecCCCCCccCeEEEEECCCCcEEE
Q 005043 313 YIAGGGSRKKRHAETLIFDILKGEWSV 339 (717)
Q Consensus 313 yV~GG~~~~~~~~dv~~yD~~t~~W~~ 339 (717)
++.|+.++. +.+||+.+.....
T Consensus 249 l~s~s~D~~-----v~vwd~~~~~~~~ 270 (410)
T 1vyh_C 249 IASCSNDQT-----VRVWVVATKECKA 270 (410)
T ss_dssp EEEEETTSC-----EEEEETTTCCEEE
T ss_pred EEEEcCCCe-----EEEEECCCCceee
Confidence 888886644 8889988776544
No 160
>2ad6_A Methanol dehydrogenase subunit 1; PQQ configuration, native, oxidoredu; HET: PQQ; 1.50A {Methylophilus methylotrophus} SCOP: b.70.1.1 PDB: 2ad7_A* 2ad8_A* 4aah_A* 1g72_A*
Probab=94.89 E-value=3.1 Score=47.05 Aligned_cols=123 Identities=11% Similarity=0.154 Sum_probs=68.1
Q ss_pred EEEECCEEEEEeccCCCCCCceEEEEEEC-CCCc--EEEeeecCC--CCCC---ceeeEEEEECCEEEEEccccCCCCCc
Q 005043 152 LISWGKKVLLVGGKTDSGSDRVSVWTFDT-ETEC--WSVVEAKGD--IPVA---RSGHTVVRASSVLILFGGEDGKRRKL 223 (717)
Q Consensus 152 ~v~~~~~Iyv~GG~~~~~~~~~~v~~yD~-~t~~--W~~l~~~g~--~P~~---R~~hs~~~~~~~Lyv~GG~~~~~~~~ 223 (717)
-++.++.||+.... ...++.+|. .+++ |+.-..... .+.. ....+.++.+++||+... -
T Consensus 58 P~v~~g~vyv~~~~------~~~v~AlD~~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~~~-------d 124 (571)
T 2ad6_A 58 PLVIGDMMYVHSAF------PNNTYALNLNDPGKIVWQHKPKQDASTKAVMCCDVVDRGLAYGAGQIVKKQA-------N 124 (571)
T ss_dssp CEEETTEEEEECST------TTCEEEEETTCTTSEEEEECCCCCGGGGGGCTTCSCCCCCEEETTEEEEECT-------T
T ss_pred cEEECCEEEEEeCC------CCEEEEEeCCCCccEEEEEcCCCCccccccccccccccccEEECCEEEEEeC-------C
Confidence 34569999998652 125999999 7765 986432110 0000 112234567889888742 2
Q ss_pred CcEEEEEcCCCc--eEeccCCCCCCCC-CcccEEEEECCcEEEEEcCCCCCCCCCeEEEEECCCCc--EEEe
Q 005043 224 NDLHMFDLKSLT--WLPLHCTGTGPSP-RSNHVAALYDDKNLLIFGGSSKSKTLNDLYSLDFETMI--WTRI 290 (717)
Q Consensus 224 ~~v~~yD~~t~~--W~~l~~~g~~P~~-R~~~aa~~~~~~~lyV~GG~~~~~~~ndv~~yd~~t~~--W~~v 290 (717)
..++.+|..+.+ |+.-.. ..+.. ....+.++.++. +|+-.+......-..++.||+.+++ |+.-
T Consensus 125 g~l~alD~~tG~~~W~~~~~--~~~~~~~~~~~P~v~~g~-v~vg~~~~~~~~~g~v~a~D~~tG~~~W~~~ 193 (571)
T 2ad6_A 125 GHLLALDAKTGKINWEVEVC--DPKVGSTLTQAPFVAKDT-VLMGCSGAELGVRGAVNAFDLKTGELKWRAF 193 (571)
T ss_dssp SEEEEEETTTCCEEEEEECC--CGGGTCBCCSCCEEETTE-EEEECBCGGGTCCCEEEEEETTTCCEEEEEE
T ss_pred CEEEEEECCCCCEEEEecCC--CCCccceeccCCEEECCE-EEEEecCCccCCCCEEEEEECCCCcEEEEEc
Confidence 469999998774 875321 11111 111222345555 6654332111123579999998755 7654
No 161
>3c5m_A Oligogalacturonate lyase; blade-shaped beta-propeller, structural genomics, PSI-2, protein structure initiative; 2.60A {Vibrio parahaemolyticus rimd 2210633}
Probab=94.88 E-value=0.93 Score=47.19 Aligned_cols=203 Identities=10% Similarity=0.039 Sum_probs=101.2
Q ss_pred ceEEEEEECCCCcEEEeeecCCCCCCceeeEEEEE-CCE-EEEEccccCCCCCcCcEEEEEcCCCceEeccCCCCCCCCC
Q 005043 172 RVSVWTFDTETECWSVVEAKGDIPVARSGHTVVRA-SSV-LILFGGEDGKRRKLNDLHMFDLKSLTWLPLHCTGTGPSPR 249 (717)
Q Consensus 172 ~~~v~~yD~~t~~W~~l~~~g~~P~~R~~hs~~~~-~~~-Lyv~GG~~~~~~~~~~v~~yD~~t~~W~~l~~~g~~P~~R 249 (717)
...++++|+.++....+... .....+....- ++. |++.. ..........++.+|+.+..+..+.. ..+.
T Consensus 167 ~~~l~~~d~~~g~~~~~~~~----~~~~~~~~~sp~dg~~l~~~~-~~~~~~~~~~l~~~d~~~~~~~~l~~----~~~~ 237 (396)
T 3c5m_A 167 TCRLIKVDIETGELEVIHQD----TAWLGHPIYRPFDDSTVGFCH-EGPHDLVDARMWLVNEDGSNVRKIKE----HAEG 237 (396)
T ss_dssp CEEEEEEETTTCCEEEEEEE----SSCEEEEEEETTEEEEEEEEE-CSCSSSCSCCCEEEETTSCCCEESSC----CCTT
T ss_pred cceEEEEECCCCcEEeeccC----CcccccceECCCCCCEEEEEe-cCCCCCCCceEEEEECCCCceeEeec----cCCC
Confidence 45799999999887766531 11122222222 244 44443 22211223579999998888777642 1111
Q ss_pred -cccEEEEE-CCcEEEEEcCCCCCCCCCeEEEEECCCCcEEEeecCCCCCCCCcceEEEEE-CCEEEEEecCCC------
Q 005043 250 -SNHVAALY-DDKNLLIFGGSSKSKTLNDLYSLDFETMIWTRIKIRGFHPSPRAGCCGVLC-GTKWYIAGGGSR------ 320 (717)
Q Consensus 250 -~~~aa~~~-~~~~lyV~GG~~~~~~~ndv~~yd~~t~~W~~v~~~g~~P~~R~~~sav~~-~~~IyV~GG~~~------ 320 (717)
.....+.. +++.|++. +.........+++||+.++....+... + ... ....- +++++++++...
T Consensus 238 ~~~~~~~~spdg~~l~~~-~~~~~~~~~~l~~~d~~~g~~~~l~~~---~--~~~-~~~s~~dg~~l~~~~~~~p~~~~~ 310 (396)
T 3c5m_A 238 ESCTHEFWIPDGSAMAYV-SYFKGQTDRVIYKANPETLENEEVMVM---P--PCS-HLMSNFDGSLMVGDGCDAPVDVAD 310 (396)
T ss_dssp EEEEEEEECTTSSCEEEE-EEETTTCCEEEEEECTTTCCEEEEEEC---C--SEE-EEEECSSSSEEEEEECCC------
T ss_pred ccccceEECCCCCEEEEE-ecCCCCccceEEEEECCCCCeEEeeeC---C--CCC-CCccCCCCceEEEecCCcceeecc
Confidence 11122333 34434433 222221223499999999888777543 2 111 22223 677776654321
Q ss_pred -----CCccCeEEEEECCCCcEEEeecCCCCC----CCCCcceEEEEEEeCCCcEEEEEcCCCCCCCCeEEEEEccCCcc
Q 005043 321 -----KKRHAETLIFDILKGEWSVAITSPSSS----VTSNKGFTLVLVQHKEKDFLVAFGGIKKEPSNQVEVLSIEKNES 391 (717)
Q Consensus 321 -----~~~~~dv~~yD~~t~~W~~l~~~p~~~----~~~r~g~s~v~v~~~~~~~I~v~GG~~~~~~n~v~vyd~~~~eW 391 (717)
......++.+|+.+.....+...+... ...........+. +++..|+......+ ...+|.+++.+..+
T Consensus 311 ~~~~~~~~~~~i~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~s-~dg~~l~~~s~~~~--~~~l~~~~~~~~~~ 387 (396)
T 3c5m_A 311 ADSYNIENDPFLYVLNTKAKSAQKLCKHSTSWDVLDGDRQITHPHPSFT-PNDDGVLFTSDFEG--VPAIYIADVPESYK 387 (396)
T ss_dssp ----CCCCCCEEEEEETTTTBCCEEEECCCCCCCBTTBSSTTCCCCEEC-TTSSEEEEEECTTS--SCEEEEEECCTTCC
T ss_pred ccccccCCCCcEEEEecccCceEEccCCCCccccccccccCCCCCceEc-cCCCeEEEEecCCC--CceEEEEEEccccc
Confidence 112357999999988776665322110 0000001111222 23445554443332 34789999887775
Q ss_pred cC
Q 005043 392 SM 393 (717)
Q Consensus 392 ~~ 393 (717)
..
T Consensus 388 ~~ 389 (396)
T 3c5m_A 388 HL 389 (396)
T ss_dssp --
T ss_pred cc
Confidence 44
No 162
>3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans}
Probab=94.85 E-value=2.4 Score=42.58 Aligned_cols=192 Identities=13% Similarity=0.080 Sum_probs=98.3
Q ss_pred CCEEEEEeccCCCCCCceEEEEEECCCCcEEEeeecCCCCCCceeeEEEEE-CCEEEEEccccCCCCCcCcEEEEEcCCC
Q 005043 156 GKKVLLVGGKTDSGSDRVSVWTFDTETECWSVVEAKGDIPVARSGHTVVRA-SSVLILFGGEDGKRRKLNDLHMFDLKSL 234 (717)
Q Consensus 156 ~~~Iyv~GG~~~~~~~~~~v~~yD~~t~~W~~l~~~g~~P~~R~~hs~~~~-~~~Lyv~GG~~~~~~~~~~v~~yD~~t~ 234 (717)
++.+|+++... ..+++||+.+. ...+.. +.. ...+++.. ++.+|+.... ...+++||+.++
T Consensus 39 g~~l~~~~~~~------~~i~~~~~~~~-~~~~~~----~~~-~~~~l~~~~dg~l~v~~~~------~~~i~~~d~~~g 100 (296)
T 3e5z_A 39 RSAVIFSDVRQ------NRTWAWSDDGQ-LSPEMH----PSH-HQNGHCLNKQGHLIACSHG------LRRLERQREPGG 100 (296)
T ss_dssp GTEEEEEEGGG------TEEEEEETTSC-EEEEES----SCS-SEEEEEECTTCCEEEEETT------TTEEEEECSTTC
T ss_pred CCEEEEEeCCC------CEEEEEECCCC-eEEEEC----CCC-CcceeeECCCCcEEEEecC------CCeEEEEcCCCC
Confidence 34588887653 26999999988 666542 222 22344443 5678876421 246899999888
Q ss_pred ceEeccCC-CCCCCCCcccEEEEECCcEEEEE----cCCC--------CCCCCCeEEEEECCCCcEEEeecCCCCCCCCc
Q 005043 235 TWLPLHCT-GTGPSPRSNHVAALYDDKNLLIF----GGSS--------KSKTLNDLYSLDFETMIWTRIKIRGFHPSPRA 301 (717)
Q Consensus 235 ~W~~l~~~-g~~P~~R~~~aa~~~~~~~lyV~----GG~~--------~~~~~ndv~~yd~~t~~W~~v~~~g~~P~~R~ 301 (717)
+...+... ...+..+.. .++...+..+|+. |... .......+++|++. +....+... ...
T Consensus 101 ~~~~~~~~~~~~~~~~~~-~i~~d~~G~l~vtd~~~g~~~~~~~~~~~~~~~~~~l~~~~~~-g~~~~~~~~-----~~~ 173 (296)
T 3e5z_A 101 EWESIADSFEGKKLNSPN-DVCLAPDGSLWFSDPTYGIDKPEEGYGGEMELPGRWVFRLAPD-GTLSAPIRD-----RVK 173 (296)
T ss_dssp CEEEEECEETTEECCCCC-CEEECTTSCEEEEECSHHHHCGGGSSCCCCCSSSCEEEEECTT-SCEEEEECC-----CSS
T ss_pred cEEEEeeccCCCCCCCCC-CEEECCCCCEEEECCccccccccccccccccCCCcEEEEECCC-CCEEEeecC-----CCC
Confidence 87765311 011111112 2333334447876 4311 01113479999987 565555322 111
Q ss_pred ceEEEEE-CCEEEEEecCCCCCccCeEEEEECC-CCcE-EEeecCCCCCCCCCcceEEEEEEeCCCcEEEEEcCCCCCCC
Q 005043 302 GCCGVLC-GTKWYIAGGGSRKKRHAETLIFDIL-KGEW-SVAITSPSSSVTSNKGFTLVLVQHKEKDFLVAFGGIKKEPS 378 (717)
Q Consensus 302 ~~sav~~-~~~IyV~GG~~~~~~~~dv~~yD~~-t~~W-~~l~~~p~~~~~~r~g~s~v~v~~~~~~~I~v~GG~~~~~~ 378 (717)
..+.+.. ++++++.+... ..+++||+. +.+. ............+ .+ +++. .++.||+..+
T Consensus 174 ~~gi~~s~dg~~lv~~~~~-----~~i~~~~~~~~g~~~~~~~~~~~~~~~p---~~-i~~d--~~G~l~v~~~------ 236 (296)
T 3e5z_A 174 PNGLAFLPSGNLLVSDTGD-----NATHRYCLNARGETEYQGVHFTVEPGKT---DG-LRVD--AGGLIWASAG------ 236 (296)
T ss_dssp EEEEEECTTSCEEEEETTT-----TEEEEEEECSSSCEEEEEEEECCSSSCC---CS-EEEB--TTSCEEEEET------
T ss_pred CccEEECCCCCEEEEeCCC-----CeEEEEEECCCCcCcCCCeEeeCCCCCC---Ce-EEEC--CCCCEEEEcC------
Confidence 1233332 56666554432 368999986 4555 2111111010001 11 2232 2456777662
Q ss_pred CeEEEEEccCC
Q 005043 379 NQVEVLSIEKN 389 (717)
Q Consensus 379 n~v~vyd~~~~ 389 (717)
+.|.+||+...
T Consensus 237 ~~v~~~~~~g~ 247 (296)
T 3e5z_A 237 DGVHVLTPDGD 247 (296)
T ss_dssp TEEEEECTTSC
T ss_pred CeEEEECCCCC
Confidence 37899998743
No 163
>3c5m_A Oligogalacturonate lyase; blade-shaped beta-propeller, structural genomics, PSI-2, protein structure initiative; 2.60A {Vibrio parahaemolyticus rimd 2210633}
Probab=94.84 E-value=0.46 Score=49.62 Aligned_cols=201 Identities=8% Similarity=-0.022 Sum_probs=98.4
Q ss_pred ccEEEEEcCCCceEEccccccCCCCCCCCCCCcccceEEEEE-CCE-EEEEeccCCCCCCceEEEEEECCCCcEEEeeec
Q 005043 114 DDVQVLNFDRFSWTAASSKLYLSPSSLPLKIPACRGHSLISW-GKK-VLLVGGKTDSGSDRVSVWTFDTETECWSVVEAK 191 (717)
Q Consensus 114 ~~v~~yd~~t~~W~~l~~~~~~~~~~~~~~~p~r~~hs~v~~-~~~-Iyv~GG~~~~~~~~~~v~~yD~~t~~W~~l~~~ 191 (717)
..++++|+.+.....+... .....+....- ++. |++... .........+|.+|+.+..+..+..
T Consensus 168 ~~l~~~d~~~g~~~~~~~~------------~~~~~~~~~sp~dg~~l~~~~~-~~~~~~~~~l~~~d~~~~~~~~l~~- 233 (396)
T 3c5m_A 168 CRLIKVDIETGELEVIHQD------------TAWLGHPIYRPFDDSTVGFCHE-GPHDLVDARMWLVNEDGSNVRKIKE- 233 (396)
T ss_dssp EEEEEEETTTCCEEEEEEE------------SSCEEEEEEETTEEEEEEEEEC-SCSSSCSCCCEEEETTSCCCEESSC-
T ss_pred ceEEEEECCCCcEEeeccC------------CcccccceECCCCCCEEEEEec-CCCCCCCceEEEEECCCCceeEeec-
Confidence 4789999988877666531 11112222222 344 444432 1111122479999998888776642
Q ss_pred CCCCCCceeeEEEEE-CCEEEEEccccCCCCCcCcEEEEEcCCCceEeccCCCCCCCCCcccEEEEE-CCcEEEEEcCCC
Q 005043 192 GDIPVARSGHTVVRA-SSVLILFGGEDGKRRKLNDLHMFDLKSLTWLPLHCTGTGPSPRSNHVAALY-DDKNLLIFGGSS 269 (717)
Q Consensus 192 g~~P~~R~~hs~~~~-~~~Lyv~GG~~~~~~~~~~v~~yD~~t~~W~~l~~~g~~P~~R~~~aa~~~-~~~~lyV~GG~~ 269 (717)
..+ .......+.. +++.+++.+.... .....+++||+.+.+...+. ..+. .. .+..- +++ ++++++..
T Consensus 234 -~~~-~~~~~~~~~spdg~~l~~~~~~~~-~~~~~l~~~d~~~g~~~~l~---~~~~--~~-~~~s~~dg~-~l~~~~~~ 303 (396)
T 3c5m_A 234 -HAE-GESCTHEFWIPDGSAMAYVSYFKG-QTDRVIYKANPETLENEEVM---VMPP--CS-HLMSNFDGS-LMVGDGCD 303 (396)
T ss_dssp -CCT-TEEEEEEEECTTSSCEEEEEEETT-TCCEEEEEECTTTCCEEEEE---ECCS--EE-EEEECSSSS-EEEEEECC
T ss_pred -cCC-CccccceEECCCCCEEEEEecCCC-CccceEEEEECCCCCeEEee---eCCC--CC-CCccCCCCc-eEEEecCC
Confidence 111 1112222332 4443334333222 11234999999988877664 2221 11 22222 556 55554421
Q ss_pred C-----------CCCCCeEEEEECCCCcEEEeecCCCCC-----C-C-CcceEEEEECC-EEEEEecCCCCCccCeEEEE
Q 005043 270 K-----------SKTLNDLYSLDFETMIWTRIKIRGFHP-----S-P-RAGCCGVLCGT-KWYIAGGGSRKKRHAETLIF 330 (717)
Q Consensus 270 ~-----------~~~~ndv~~yd~~t~~W~~v~~~g~~P-----~-~-R~~~sav~~~~-~IyV~GG~~~~~~~~dv~~y 330 (717)
. ......++.+|+.++....+....... . . ........-++ .|++.....+ ...+|.+
T Consensus 304 ~p~~~~~~~~~~~~~~~~i~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~s~~~~---~~~l~~~ 380 (396)
T 3c5m_A 304 APVDVADADSYNIENDPFLYVLNTKAKSAQKLCKHSTSWDVLDGDRQITHPHPSFTPNDDGVLFTSDFEG---VPAIYIA 380 (396)
T ss_dssp C----------CCCCCCEEEEEETTTTBCCEEEECCCCCCCBTTBSSTTCCCCEECTTSSEEEEEECTTS---SCEEEEE
T ss_pred cceeeccccccccCCCCcEEEEecccCceEEccCCCCccccccccccCCCCCceEccCCCeEEEEecCCC---CceEEEE
Confidence 0 112357999999988877665431100 0 0 01111122244 5555443322 2569999
Q ss_pred ECCCCcEEEee
Q 005043 331 DILKGEWSVAI 341 (717)
Q Consensus 331 D~~t~~W~~l~ 341 (717)
|+.+..++.+.
T Consensus 381 ~~~~~~~~~~~ 391 (396)
T 3c5m_A 381 DVPESYKHLEH 391 (396)
T ss_dssp ECCTTCC----
T ss_pred EEccccccccc
Confidence 99888877654
No 164
>1w6s_A Methanol dehydrogenase subunit 1; anisotropic, electron transfer, oxidoreductase, calcium- binding, methanol utilization, PQQ; HET: PQQ; 1.2A {Methylobacterium extorquens} SCOP: b.70.1.1 PDB: 1h4i_A* 1h4j_A* 2d0v_A* 1lrw_A*
Probab=94.83 E-value=2.9 Score=47.80 Aligned_cols=129 Identities=16% Similarity=0.151 Sum_probs=70.5
Q ss_pred eEEEEECCEEEEEcccCCCCCcccEEEEEc-CCC--ceEEccccccCCCCCCCCCCCcc--cceEEEE--ECCE----EE
Q 005043 92 HAAAVIGNKMIVVGGESGNGLLDDVQVLNF-DRF--SWTAASSKLYLSPSSLPLKIPAC--RGHSLIS--WGKK----VL 160 (717)
Q Consensus 92 haav~~~~~lyV~GG~~~~~~~~~v~~yd~-~t~--~W~~l~~~~~~~~~~~~~~~p~r--~~hs~v~--~~~~----Iy 160 (717)
.+-++.++.||+.+.. .+.++.+|. .+. .|+.-....... .+...+ ...+.++ .+++ ||
T Consensus 56 ~tP~v~~g~vyv~~~~-----~~~v~AlD~~~tG~~lW~~~~~~~~~~-----~~~~~~~~~~~g~av~p~~g~~~~rV~ 125 (599)
T 1w6s_A 56 GAPLVVDGKMYIHTSF-----PNNTFALGLDDPGTILWQDKPKQNPAA-----RAVACCDLVNRGLAYWPGDGKTPALIL 125 (599)
T ss_dssp SCCEEETTEEEEECST-----TTCEEEEETTCTTSEEEEECCCCCGGG-----GGGCSSCSCCCCCEEECCCSSSCCEEE
T ss_pred eccEEECCEEEEEeCC-----CCEEEEEeCCCCCcEEEEECCCCCccc-----cccccccccccceEEEecCCcceeEEE
Confidence 3446679999998753 236899999 665 698755421000 000000 0122344 5666 77
Q ss_pred EEeccCCCCCCceEEEEEECCCCc--EEEeeecCCCCCCceeeEEEEECCEEEEEccccCCCCCcCcEEEEEcCCCc--e
Q 005043 161 LVGGKTDSGSDRVSVWTFDTETEC--WSVVEAKGDIPVARSGHTVVRASSVLILFGGEDGKRRKLNDLHMFDLKSLT--W 236 (717)
Q Consensus 161 v~GG~~~~~~~~~~v~~yD~~t~~--W~~l~~~g~~P~~R~~hs~~~~~~~Lyv~GG~~~~~~~~~~v~~yD~~t~~--W 236 (717)
+... ...++.+|..|++ |+.-..... +......+-++.++.+|+-.+.... .....++.||..+.+ |
T Consensus 126 v~t~-------dg~l~AlDa~TG~~~W~~~~~~~~-~~~~~~ssP~v~~g~V~vg~~g~e~-g~~g~v~A~D~~TG~~~W 196 (599)
T 1w6s_A 126 KTQL-------DGNVAALNAETGETVWKVENSDIK-VGSTLTIAPYVVKDKVIIGSSGAEL-GVRGYLTAYDVKTGEQVW 196 (599)
T ss_dssp EECT-------TSEEEEEETTTCCEEEEEECCCGG-GTCBCCSCCEEETTEEEECCBCGGG-TCCCEEEEEETTTCCEEE
T ss_pred EEcC-------CCEEEEEECCCCCEEEeecCCCCC-ccceeecCCEEECCEEEEEeccccc-CCCCeEEEEECCCCcEEE
Confidence 7532 1369999998875 876431100 0001122334568888765432111 124579999998775 8
Q ss_pred Eec
Q 005043 237 LPL 239 (717)
Q Consensus 237 ~~l 239 (717)
+.-
T Consensus 197 ~~~ 199 (599)
T 1w6s_A 197 RAY 199 (599)
T ss_dssp EEE
T ss_pred EEc
Confidence 754
No 165
>2bkl_A Prolyl endopeptidase; mechanistic study, celiac sprue, hydrolase, protease; HET: ZAH MES; 1.5A {Myxococcus xanthus}
Probab=94.78 E-value=0.81 Score=52.85 Aligned_cols=213 Identities=9% Similarity=0.004 Sum_probs=110.2
Q ss_pred CCEEEEEcccCCCCCcccEEEEEcCCCceEEccccccCCCCCCCCCCCcccceEEEE-ECCEEEEEeccCCCC-------
Q 005043 98 GNKMIVVGGESGNGLLDDVQVLNFDRFSWTAASSKLYLSPSSLPLKIPACRGHSLIS-WGKKVLLVGGKTDSG------- 169 (717)
Q Consensus 98 ~~~lyV~GG~~~~~~~~~v~~yd~~t~~W~~l~~~~~~~~~~~~~~~p~r~~hs~v~-~~~~Iyv~GG~~~~~------- 169 (717)
+++.++|.-.........++++|+.++....... .+......++. -+++.++++......
T Consensus 131 DG~~la~~~~~~G~~~~~i~v~dl~tg~~~~~~~------------~~~~~~~~~~wspDg~~l~~~~~d~~~~~~~~~~ 198 (695)
T 2bkl_A 131 DGKKVAFAQKPNAADEAVLHVIDVDSGEWSKVDV------------IEGGKYATPKWTPDSKGFYYEWLPTDPSIKVDER 198 (695)
T ss_dssp TSSEEEEEEEETTCSCCEEEEEETTTCCBCSSCC------------BSCCTTCCCEECTTSSEEEEEECCCCTTSCGGGG
T ss_pred CCCEEEEEECCCCCceEEEEEEECCCCCCcCCcc------------cCcccccceEEecCCCEEEEEEecCCCCCccccC
Confidence 5555555433222223479999999987641111 11111112222 255666665543221
Q ss_pred CCceEEEEEECCCCcE--EEeeecCCCCCCceeeEEEE-ECCEEEEEccccCCCCCcCcEEEEEcCCCceEeccCCCCCC
Q 005043 170 SDRVSVWTFDTETECW--SVVEAKGDIPVARSGHTVVR-ASSVLILFGGEDGKRRKLNDLHMFDLKSLTWLPLHCTGTGP 246 (717)
Q Consensus 170 ~~~~~v~~yD~~t~~W--~~l~~~g~~P~~R~~hs~~~-~~~~Lyv~GG~~~~~~~~~~v~~yD~~t~~W~~l~~~g~~P 246 (717)
.....+|++++.+..- ..+.. ....+........ -+++.++++..... ..+.+|.+|..+..|..+...
T Consensus 199 ~~~~~v~~~~l~t~~~~~~lv~~--~~~~~~~~~~~~~SpDG~~l~~~~~~~~--~~~~l~~~~~~~~~~~~l~~~---- 270 (695)
T 2bkl_A 199 PGYTTIRYHTLGTEPSKDTVVHE--RTGDPTTFLQSDLSRDGKYLFVYILRGW--SENDVYWKRPGEKDFRLLVKG---- 270 (695)
T ss_dssp GGGCEEEEEETTSCGGGCEEEEC--CCCCTTCEEEEEECTTSCCEEEEEEETT--TEEEEEEECTTCSSCEEEEEC----
T ss_pred CCCCEEEEEECCCCchhceEEEe--cCCCCEEEEEEEECCCCCEEEEEEeCCC--CceEEEEEcCCCCceEEeecC----
Confidence 1234699999988752 23321 1111122223333 24554444443321 246788888877788877521
Q ss_pred CCCcccEEEEECCcEEEEEcCCCCCCCCCeEEEEECCCCc---EEEeecCCCCCCCCcceEEEEECCEEEEEecCCCCCc
Q 005043 247 SPRSNHVAALYDDKNLLIFGGSSKSKTLNDLYSLDFETMI---WTRIKIRGFHPSPRAGCCGVLCGTKWYIAGGGSRKKR 323 (717)
Q Consensus 247 ~~R~~~aa~~~~~~~lyV~GG~~~~~~~ndv~~yd~~t~~---W~~v~~~g~~P~~R~~~sav~~~~~IyV~GG~~~~~~ 323 (717)
... ....+..+++ +|+....+ .....++++|+.+.. |+.+.... + ..........++++++....++.
T Consensus 271 ~~~-~~~~~~~~g~-l~~~s~~~--~~~~~l~~~d~~~~~~~~~~~l~~~~--~-~~~l~~~~~~~~~lv~~~~~dg~-- 341 (695)
T 2bkl_A 271 VGA-KYEVHAWKDR-FYVLTDEG--APRQRVFEVDPAKPARASWKEIVPED--S-SASLLSVSIVGGHLSLEYLKDAT-- 341 (695)
T ss_dssp SSC-CEEEEEETTE-EEEEECTT--CTTCEEEEEBTTBCSGGGCEEEECCC--S-SCEEEEEEEETTEEEEEEEETTE--
T ss_pred CCc-eEEEEecCCc-EEEEECCC--CCCCEEEEEeCCCCCccCCeEEecCC--C-CCeEEEEEEECCEEEEEEEECCE--
Confidence 111 1222335677 77765432 224579999997765 88876421 1 12222334448888888765433
Q ss_pred cCeEEEEECCCCcEEEe
Q 005043 324 HAETLIFDILKGEWSVA 340 (717)
Q Consensus 324 ~~dv~~yD~~t~~W~~l 340 (717)
..+|.+++....-..+
T Consensus 342 -~~l~~~~~~g~~~~~l 357 (695)
T 2bkl_A 342 -SEVRVATLKGKPVRTV 357 (695)
T ss_dssp -EEEEEEETTCCEEEEC
T ss_pred -EEEEEEeCCCCeeEEe
Confidence 4688899865544443
No 166
>3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B*
Probab=94.76 E-value=1.7 Score=45.34 Aligned_cols=188 Identities=11% Similarity=0.037 Sum_probs=100.9
Q ss_pred EEEEEcccCCCCCcccEEEEEcCCCceEEccccccCCCCCCCCCCCcccceEEEEE--CCEEEEEeccCCCCCCceEEEE
Q 005043 100 KMIVVGGESGNGLLDDVQVLNFDRFSWTAASSKLYLSPSSLPLKIPACRGHSLISW--GKKVLLVGGKTDSGSDRVSVWT 177 (717)
Q Consensus 100 ~lyV~GG~~~~~~~~~v~~yd~~t~~W~~l~~~~~~~~~~~~~~~p~r~~hs~v~~--~~~Iyv~GG~~~~~~~~~~v~~ 177 (717)
.+++.|+.++ .+.+||+.+......... ......-.+++.. ++.+++.|+.+ ..+.+
T Consensus 87 ~~l~s~~~dg-----~i~iwd~~~~~~~~~~~~----------~~h~~~v~~~~~~~~~~~~l~s~~~d------~~i~i 145 (383)
T 3ei3_B 87 TTVAVGSKGG-----DIILWDYDVQNKTSFIQG----------MGPGDAITGMKFNQFNTNQLFVSSIR------GATTL 145 (383)
T ss_dssp TEEEEEEBTS-----CEEEEETTSTTCEEEECC----------CSTTCBEEEEEEETTEEEEEEEEETT------TEEEE
T ss_pred CEEEEEcCCC-----eEEEEeCCCcccceeeec----------CCcCCceeEEEeCCCCCCEEEEEeCC------CEEEE
Confidence 5777777653 589999998766554321 0111112333343 34677777653 26889
Q ss_pred EECCCCcEEEeeecCCCCCCceeeEEEEE-CCEEEEEccccCCCCCcCcEEEEEcCCCceEeccCCCCCCCCCcccEEEE
Q 005043 178 FDTETECWSVVEAKGDIPVARSGHTVVRA-SSVLILFGGEDGKRRKLNDLHMFDLKSLTWLPLHCTGTGPSPRSNHVAAL 256 (717)
Q Consensus 178 yD~~t~~W~~l~~~g~~P~~R~~hs~~~~-~~~Lyv~GG~~~~~~~~~~v~~yD~~t~~W~~l~~~g~~P~~R~~~aa~~ 256 (717)
||+.+.....+.... .....-.+++.. ++.+++.|+.+ ..+.+||+.......+. . ....-.+++.
T Consensus 146 wd~~~~~~~~~~~~~--~~~~~v~~~~~~~~~~~l~~~~~d------~~i~i~d~~~~~~~~~~---~--h~~~v~~~~~ 212 (383)
T 3ei3_B 146 RDFSGSVIQVFAKTD--SWDYWYCCVDVSVSRQMLATGDST------GRLLLLGLDGHEIFKEK---L--HKAKVTHAEF 212 (383)
T ss_dssp EETTSCEEEEEECCC--CSSCCEEEEEEETTTTEEEEEETT------SEEEEEETTSCEEEEEE---C--SSSCEEEEEE
T ss_pred EECCCCceEEEeccC--CCCCCeEEEEECCCCCEEEEECCC------CCEEEEECCCCEEEEec---c--CCCcEEEEEE
Confidence 999987776665311 111112233333 45677777644 45888998544433332 1 1111223333
Q ss_pred ECCcE-EEEEcCCCCCCCCCeEEEEECCC----CcEEEeecCCCCCCCCcceEEEEE--CCEEEEEecCCCCCccCeEEE
Q 005043 257 YDDKN-LLIFGGSSKSKTLNDLYSLDFET----MIWTRIKIRGFHPSPRAGCCGVLC--GTKWYIAGGGSRKKRHAETLI 329 (717)
Q Consensus 257 ~~~~~-lyV~GG~~~~~~~ndv~~yd~~t----~~W~~v~~~g~~P~~R~~~sav~~--~~~IyV~GG~~~~~~~~dv~~ 329 (717)
..+.. +++.|+.++ .+.+||+.+ ........ ....-.+++.. ++.+++.|+.+ ..+.+
T Consensus 213 ~~~~~~~l~s~~~d~-----~i~iwd~~~~~~~~~~~~~~~-----~~~~v~~~~~s~~~~~~l~~~~~d-----~~i~i 277 (383)
T 3ei3_B 213 NPRCDWLMATSSVDA-----TVKLWDLRNIKDKNSYIAEMP-----HEKPVNAAYFNPTDSTKLLTTDQR-----NEIRV 277 (383)
T ss_dssp CSSCTTEEEEEETTS-----EEEEEEGGGCCSTTCEEEEEE-----CSSCEEEEEECTTTSCEEEEEESS-----SEEEE
T ss_pred CCCCCCEEEEEeCCC-----EEEEEeCCCCCcccceEEEec-----CCCceEEEEEcCCCCCEEEEEcCC-----CcEEE
Confidence 34332 677776653 589999876 33332221 11112222222 56777777765 35889
Q ss_pred EECCCCc
Q 005043 330 FDILKGE 336 (717)
Q Consensus 330 yD~~t~~ 336 (717)
||+.+..
T Consensus 278 wd~~~~~ 284 (383)
T 3ei3_B 278 YSSYDWS 284 (383)
T ss_dssp EETTBTT
T ss_pred EECCCCc
Confidence 9987643
No 167
>1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A
Probab=94.75 E-value=4.3 Score=44.85 Aligned_cols=198 Identities=12% Similarity=0.055 Sum_probs=94.4
Q ss_pred CCEEEEEeccCCCCCCceEEEEEECCCC------cEEEeeecCCCCCCceeeEEEE-ECCEEEEEccccCCCCCcCcEEE
Q 005043 156 GKKVLLVGGKTDSGSDRVSVWTFDTETE------CWSVVEAKGDIPVARSGHTVVR-ASSVLILFGGEDGKRRKLNDLHM 228 (717)
Q Consensus 156 ~~~Iyv~GG~~~~~~~~~~v~~yD~~t~------~W~~l~~~g~~P~~R~~hs~~~-~~~~Lyv~GG~~~~~~~~~~v~~ 228 (717)
++++++.|+.+ ..+.+||+.+. ....+..... . ...-.+++. -++..++.+|.+.. ....++.
T Consensus 77 ~~~~l~s~~~d------g~v~vw~~~~~~~~~~~~~~~~~~~~~-~-~~~v~~~~~s~~~~~l~~~~~~~~--~~~~v~~ 146 (615)
T 1pgu_A 77 GSQYLCSGDES------GKVIVWGWTFDKESNSVEVNVKSEFQV-L-AGPISDISWDFEGRRLCVVGEGRD--NFGVFIS 146 (615)
T ss_dssp TCCEEEEEETT------SEEEEEEEEEEGGGTEEEEEEEEEEEC-C-SSCEEEEEECTTSSEEEEEECCSS--CSEEEEE
T ss_pred CCCEEEEecCC------CEEEEEeCCCCcccccccccccchhhc-c-cccEEEEEEeCCCCEEEEeccCCC--CccEEEE
Confidence 55677777753 25777777544 3332221001 1 111223333 24566666665433 2356777
Q ss_pred EEcCCCceEeccCCCCCCCCCcccEEEEECCc-EEEEEcCCCCCCCCCeEEEEECCCCcEEEeecCCCCCCCC-cceEEE
Q 005043 229 FDLKSLTWLPLHCTGTGPSPRSNHVAALYDDK-NLLIFGGSSKSKTLNDLYSLDFETMIWTRIKIRGFHPSPR-AGCCGV 306 (717)
Q Consensus 229 yD~~t~~W~~l~~~g~~P~~R~~~aa~~~~~~-~lyV~GG~~~~~~~ndv~~yd~~t~~W~~v~~~g~~P~~R-~~~sav 306 (717)
||... .-..+. . ....-.++....+. .+++.|+.+ ..+..||..+..-...-.. ..... .-.+++
T Consensus 147 ~d~~~-~~~~~~---~--~~~~v~~~~~~~~~~~~l~~~~~d-----~~v~vwd~~~~~~~~~~~~--~~~~~~~v~~~~ 213 (615)
T 1pgu_A 147 WDSGN-SLGEVS---G--HSQRINACHLKQSRPMRSMTVGDD-----GSVVFYQGPPFKFSASDRT--HHKQGSFVRDVE 213 (615)
T ss_dssp TTTCC-EEEECC---S--CSSCEEEEEECSSSSCEEEEEETT-----TEEEEEETTTBEEEEEECS--SSCTTCCEEEEE
T ss_pred EECCC-cceeee---c--CCccEEEEEECCCCCcEEEEEeCC-----CcEEEEeCCCcceeeeecc--cCCCCceEEEEE
Confidence 77322 112221 1 11112233333333 366667654 3589999876554332211 11100 222333
Q ss_pred EE-C-CEEEEEecCCCCCccCeEEEEECCCCcEEEeecCCCCCCCCCcceEEEEEEeCCCcEEEEEcCCCCCCCCeEEEE
Q 005043 307 LC-G-TKWYIAGGGSRKKRHAETLIFDILKGEWSVAITSPSSSVTSNKGFTLVLVQHKEKDFLVAFGGIKKEPSNQVEVL 384 (717)
Q Consensus 307 ~~-~-~~IyV~GG~~~~~~~~dv~~yD~~t~~W~~l~~~p~~~~~~r~g~s~v~v~~~~~~~I~v~GG~~~~~~n~v~vy 384 (717)
.. + +.+++.|+.++ .+.+||+.+.+.......+ ..........+.+. ++.+++.|+.+ ..+.+|
T Consensus 214 ~~~~~~~~l~~~~~dg-----~i~vwd~~~~~~~~~~~~~--~~~~~~~v~~~~~~---~~~~l~~~~~d----~~i~~w 279 (615)
T 1pgu_A 214 FSPDSGEFVITVGSDR-----KISCFDGKSGEFLKYIEDD--QEPVQGGIFALSWL---DSQKFATVGAD----ATIRVW 279 (615)
T ss_dssp ECSTTCCEEEEEETTC-----CEEEEETTTCCEEEECCBT--TBCCCSCEEEEEES---SSSEEEEEETT----SEEEEE
T ss_pred ECCCCCCEEEEEeCCC-----eEEEEECCCCCEeEEeccc--ccccCCceEEEEEc---CCCEEEEEcCC----CcEEEE
Confidence 32 5 67888887654 4899999887654432000 00111222333333 34455666653 257888
Q ss_pred EccCCc
Q 005043 385 SIEKNE 390 (717)
Q Consensus 385 d~~~~e 390 (717)
|+.+.+
T Consensus 280 d~~~~~ 285 (615)
T 1pgu_A 280 DVTTSK 285 (615)
T ss_dssp ETTTTE
T ss_pred ECCCCc
Confidence 887655
No 168
>2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A
Probab=94.69 E-value=0.92 Score=47.95 Aligned_cols=208 Identities=13% Similarity=0.066 Sum_probs=100.2
Q ss_pred CCEEEEEcccCCCCCcccEEEEEcCCCceEEccccccCCCCCCCCCCCcccceEEEEE-CC-EEEEEeccCCCCCCceEE
Q 005043 98 GNKMIVVGGESGNGLLDDVQVLNFDRFSWTAASSKLYLSPSSLPLKIPACRGHSLISW-GK-KVLLVGGKTDSGSDRVSV 175 (717)
Q Consensus 98 ~~~lyV~GG~~~~~~~~~v~~yd~~t~~W~~l~~~~~~~~~~~~~~~p~r~~hs~v~~-~~-~Iyv~GG~~~~~~~~~~v 175 (717)
++.+++.|+.++ .+.+||+.++.+......... .+......-.+++.. ++ .+++.|+.+. .+
T Consensus 93 ~~~~l~s~s~dg-----~v~vw~~~~~~~~~~~~~~~~-----~~~~h~~~v~~~~~~p~~~~~l~s~~~dg------~i 156 (402)
T 2aq5_A 93 NDNVIASGSEDC-----TVMVWEIPDGGLVLPLREPVI-----TLEGHTKRVGIVAWHPTAQNVLLSAGCDN------VI 156 (402)
T ss_dssp CTTEEEEEETTS-----EEEEEECCTTCCSSCBCSCSE-----EEECCSSCEEEEEECSSBTTEEEEEETTS------CE
T ss_pred CCCEEEEEeCCC-----eEEEEEccCCCCccccCCceE-----EecCCCCeEEEEEECcCCCCEEEEEcCCC------EE
Confidence 456777777553 588899887643211000000 000011111223333 22 5777777642 58
Q ss_pred EEEECCCCcEEEeeecCCCCCCceeeEEEEE-CCEEEEEccccCCCCCcCcEEEEEcCCCceEeccCCCCCCCCCcccEE
Q 005043 176 WTFDTETECWSVVEAKGDIPVARSGHTVVRA-SSVLILFGGEDGKRRKLNDLHMFDLKSLTWLPLHCTGTGPSPRSNHVA 254 (717)
Q Consensus 176 ~~yD~~t~~W~~l~~~g~~P~~R~~hs~~~~-~~~Lyv~GG~~~~~~~~~~v~~yD~~t~~W~~l~~~g~~P~~R~~~aa 254 (717)
.+||+.+......-. .......-.+++.. ++.+++.|+.+ ..+.+||+.+.+-...-.. . ........+
T Consensus 157 ~iwd~~~~~~~~~~~--~~~~~~~v~~~~~~~~~~~l~~~~~d------~~i~iwd~~~~~~~~~~~~-~-~~~~~~~~~ 226 (402)
T 2aq5_A 157 LVWDVGTGAAVLTLG--PDVHPDTIYSVDWSRDGALICTSCRD------KRVRVIEPRKGTVVAEKDR-P-HEGTRPVHA 226 (402)
T ss_dssp EEEETTTTEEEEEEC--TTTCCSCEEEEEECTTSSCEEEEETT------SEEEEEETTTTEEEEEEEC-S-SCSSSCCEE
T ss_pred EEEECCCCCccEEEe--cCCCCCceEEEEECCCCCEEEEEecC------CcEEEEeCCCCceeeeecc-C-CCCCcceEE
Confidence 899998886543320 00111122233333 56677777644 3589999987654322100 1 111112334
Q ss_pred EEECCcEEEEEcCCCCCCCCCeEEEEECCCCcE-EEeecCCCCCCCCcceEEEEE--CCEEEEEecCCCCCccCeEEEEE
Q 005043 255 ALYDDKNLLIFGGSSKSKTLNDLYSLDFETMIW-TRIKIRGFHPSPRAGCCGVLC--GTKWYIAGGGSRKKRHAETLIFD 331 (717)
Q Consensus 255 ~~~~~~~lyV~GG~~~~~~~ndv~~yd~~t~~W-~~v~~~g~~P~~R~~~sav~~--~~~IyV~GG~~~~~~~~dv~~yD 331 (717)
+...+..+++.|.... .-..+.+||+.+..- ...... +......+++.. +..+++.|+.++ .+.+||
T Consensus 227 ~~~~~~~~l~~g~~~~--~d~~i~iwd~~~~~~~~~~~~~---~~~~~v~~~~~s~~~~~l~~~g~~dg-----~i~i~d 296 (402)
T 2aq5_A 227 VFVSEGKILTTGFSRM--SERQVALWDTKHLEEPLSLQEL---DTSSGVLLPFFDPDTNIVYLCGKGDS-----SIRYFE 296 (402)
T ss_dssp EECSTTEEEEEEECTT--CCEEEEEEETTBCSSCSEEEEC---CCCSSCEEEEEETTTTEEEEEETTCS-----CEEEEE
T ss_pred EEcCCCcEEEEeccCC--CCceEEEEcCccccCCceEEec---cCCCceeEEEEcCCCCEEEEEEcCCC-----eEEEEE
Confidence 4445554666662100 124689999876432 111111 111222233333 455666776554 488899
Q ss_pred CCCCc--EEEee
Q 005043 332 ILKGE--WSVAI 341 (717)
Q Consensus 332 ~~t~~--W~~l~ 341 (717)
+.+.. ...+.
T Consensus 297 ~~~~~~~~~~l~ 308 (402)
T 2aq5_A 297 ITSEAPFLHYLS 308 (402)
T ss_dssp ECSSTTCEEEEE
T ss_pred ecCCCcceEeec
Confidence 88766 44443
No 169
>4ggc_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; HET: MRD; 1.35A {Homo sapiens}
Probab=94.67 E-value=3.9 Score=40.72 Aligned_cols=224 Identities=14% Similarity=0.086 Sum_probs=103.1
Q ss_pred cEEEEEcCCCceEEccccccCCCCCCCCCCCcccceEEEEE-CCEEEEEeccCCCCCCceEEEEEECCCCcEEEeeecCC
Q 005043 115 DVQVLNFDRFSWTAASSKLYLSPSSLPLKIPACRGHSLISW-GKKVLLVGGKTDSGSDRVSVWTFDTETECWSVVEAKGD 193 (717)
Q Consensus 115 ~v~~yd~~t~~W~~l~~~~~~~~~~~~~~~p~r~~hs~v~~-~~~Iyv~GG~~~~~~~~~~v~~yD~~t~~W~~l~~~g~ 193 (717)
.+.++|+.+++-...-. .......-.+++.. +++.++.|+.+. .+.+||..+++-.....
T Consensus 46 tV~iWd~~tg~~~~~~~----------~~~~~~~V~~v~~~~~~~~l~sgs~Dg------~v~iw~~~~~~~~~~~~--- 106 (318)
T 4ggc_A 46 SVYLWSASSGDILQLLQ----------MEQPGEYISSVAWIKEGNYLAVGTSSA------EVQLWDVQQQKRLRNMT--- 106 (318)
T ss_dssp EEEEEETTTCCEEEEEE----------CCSTTCCEEEEEECTTSSEEEEEETTS------EEEEEETTTTEEEEEEE---
T ss_pred EEEEEECCCCCEEEEEE----------ecCCCCeEEEEEECCCCCEEEEEECCC------cEEEeecCCceeEEEec---
Confidence 58888988876554322 11111111222222 567778887642 68889998876433321
Q ss_pred CCCCceeeEEEEECCEEEEEccccCCCCCcCcEEEEEcCCCceEeccCCCCCCCCCcccEEEEECCcEEEEEcCCCCCCC
Q 005043 194 IPVARSGHTVVRASSVLILFGGEDGKRRKLNDLHMFDLKSLTWLPLHCTGTGPSPRSNHVAALYDDKNLLIFGGSSKSKT 273 (717)
Q Consensus 194 ~P~~R~~hs~~~~~~~Lyv~GG~~~~~~~~~~v~~yD~~t~~W~~l~~~g~~P~~R~~~aa~~~~~~~lyV~GG~~~~~~ 273 (717)
....+ .......+.+++.|+.+. .+..++..+.........+ ...............+++.|+.++
T Consensus 107 ~h~~~--~~~~~~~~~~l~s~~~~~------~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~l~s~~~d~--- 172 (318)
T 4ggc_A 107 SHSAR--VGSLSWNSYILSSGSRSG------HIHHHDVRVAEHHVATLSG---HSQEVCGLRWAPDGRHLASGGNDN--- 172 (318)
T ss_dssp CCSSC--EEEEEEETTEEEEEETTS------EEEEEETTSSSCEEEEEEC---CSSCEEEEEECTTSSEEEEEETTS---
T ss_pred Cccce--EEEeecCCCEEEEEecCC------ceEeeecCCCceeEEEEcC---ccCceEEEEEcCCCCEEEEEecCc---
Confidence 11111 222334455666665432 3445555443322211001 111112222223333566666553
Q ss_pred CCeEEEEECCCCcEE--EeecCCCCCCCCcceEEEEE--CCEE-EEEecCCCCCccCeEEEEECCCCcEEEeecCCCCCC
Q 005043 274 LNDLYSLDFETMIWT--RIKIRGFHPSPRAGCCGVLC--GTKW-YIAGGGSRKKRHAETLIFDILKGEWSVAITSPSSSV 348 (717)
Q Consensus 274 ~ndv~~yd~~t~~W~--~v~~~g~~P~~R~~~sav~~--~~~I-yV~GG~~~~~~~~dv~~yD~~t~~W~~l~~~p~~~~ 348 (717)
.+.+||..+..-. .+... ......-.+.+.. +..+ ++.+|... ..+.++|.....-......
T Consensus 173 --~i~iwd~~~~~~~~~~~~~~--~~~~~~v~~~~~~~~~~~~~~~~~~~~~----~~i~lwd~~~~~~~~~~~~----- 239 (318)
T 4ggc_A 173 --LVNVWPSAPGEGGWVPLQTF--TQHQGAVKAVAWCPWQSNVLATGGGTSD----RHIRIWNVCSGACLSAVDA----- 239 (318)
T ss_dssp --CEEEEESSCBTTBSCCSEEE--CCCCSCEEEEEECTTSTTEEEEEECTTT----CEEEEEETTTCCEEEEEEC-----
T ss_pred --ceeEEECCCCcccccceeee--cccCCceEEEEecCCCCcEEEEEecCCC----CEEEEEecccccccccccc-----
Confidence 4888898754311 11110 0011111122222 3333 44444322 3577888877665543321
Q ss_pred CCCcceEEEEEEeCCCcEEEEEcCCCCCCCCeEEEEEccCCc
Q 005043 349 TSNKGFTLVLVQHKEKDFLVAFGGIKKEPSNQVEVLSIEKNE 390 (717)
Q Consensus 349 ~~r~g~s~v~v~~~~~~~I~v~GG~~~~~~n~v~vyd~~~~e 390 (717)
........+ ...+..+++.+|.... .|.+||+.+.+
T Consensus 240 --~~~v~~~~~-~~~~~~~~~~sg~~d~---~i~iwd~~~~~ 275 (318)
T 4ggc_A 240 --HSQVCSILW-SPHYKELISGHGFAQN---QLVIWKYPTMA 275 (318)
T ss_dssp --SSCEEEEEE-ETTTTEEEEEECTTTC---CEEEEETTTCC
T ss_pred --eeeeeeeee-cccccceEEEEEcCCC---EEEEEECCCCc
Confidence 111222233 2345566666554332 68899987665
No 170
>1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A
Probab=94.67 E-value=1.3 Score=43.45 Aligned_cols=185 Identities=11% Similarity=0.032 Sum_probs=97.5
Q ss_pred CCEEEEEcccCCCCCcccEEEEEcCCCceEEccccccCCCCCCCCCCCcccceEEEEE-CCEEEEEeccCCCCCCceEEE
Q 005043 98 GNKMIVVGGESGNGLLDDVQVLNFDRFSWTAASSKLYLSPSSLPLKIPACRGHSLISW-GKKVLLVGGKTDSGSDRVSVW 176 (717)
Q Consensus 98 ~~~lyV~GG~~~~~~~~~v~~yd~~t~~W~~l~~~~~~~~~~~~~~~p~r~~hs~v~~-~~~Iyv~GG~~~~~~~~~~v~ 176 (717)
++.||+... . ..+++||+.+.....+... ....-++++.. ++++|+..... ..++
T Consensus 77 ~g~l~v~~~-~-----~~i~~~d~~~~~~~~~~~~------------~~~~p~~i~~~~~g~l~v~~~~~------~~i~ 132 (270)
T 1rwi_B 77 AGTVYVTDF-N-----NRVVTLAAGSNNQTVLPFD------------GLNYPEGLAVDTQGAVYVADRGN------NRVV 132 (270)
T ss_dssp TCCEEEEET-T-----TEEEEECTTCSCCEECCCC------------SCSSEEEEEECTTCCEEEEEGGG------TEEE
T ss_pred CCCEEEEcC-C-----CEEEEEeCCCceEeeeecC------------CcCCCcceEECCCCCEEEEECCC------CEEE
Confidence 466888765 2 3689999987655443320 00112344444 56788875432 2588
Q ss_pred EEECCCCcEEEeeecCCCCCCceeeEEEEE-CCEEEEEccccCCCCCcCcEEEEEcCCCceEeccCCCCCCCCCcccEEE
Q 005043 177 TFDTETECWSVVEAKGDIPVARSGHTVVRA-SSVLILFGGEDGKRRKLNDLHMFDLKSLTWLPLHCTGTGPSPRSNHVAA 255 (717)
Q Consensus 177 ~yD~~t~~W~~l~~~g~~P~~R~~hs~~~~-~~~Lyv~GG~~~~~~~~~~v~~yD~~t~~W~~l~~~g~~P~~R~~~aa~ 255 (717)
+||..+......... .. ..-..++.. ++.||+.... .+.+.+||+.+..-..... ..+ ..-..++
T Consensus 133 ~~~~~~~~~~~~~~~-~~---~~p~~i~~~~~g~l~v~~~~------~~~i~~~~~~~~~~~~~~~-~~~---~~p~~i~ 198 (270)
T 1rwi_B 133 KLAAGSKTQTVLPFT-GL---NDPDGVAVDNSGNVYVTDTD------NNRVVKLEAESNNQVVLPF-TDI---TAPWGIA 198 (270)
T ss_dssp EECTTCCSCEECCCC-SC---CSCCCEEECTTCCEEEEEGG------GTEEEEECTTTCCEEECCC-SSC---CSEEEEE
T ss_pred EEECCCceeEeeccc-cC---CCceeEEEeCCCCEEEEECC------CCEEEEEecCCCceEeecc-cCC---CCceEEE
Confidence 888776654433211 11 112334443 4678887532 2468999998765443321 111 1112333
Q ss_pred EECCcEEEEEcCCCCCCCCCeEEEEECCCCcEEEeecCCCCCCCCcceEEEEE-CCEEEEEecCCCCCccCeEEEEECCC
Q 005043 256 LYDDKNLLIFGGSSKSKTLNDLYSLDFETMIWTRIKIRGFHPSPRAGCCGVLC-GTKWYIAGGGSRKKRHAETLIFDILK 334 (717)
Q Consensus 256 ~~~~~~lyV~GG~~~~~~~ndv~~yd~~t~~W~~v~~~g~~P~~R~~~sav~~-~~~IyV~GG~~~~~~~~dv~~yD~~t 334 (717)
...+..+|+....+ +.+.+||+.+..-...... ....-.+++.. ++.|||....+ +.|.+|++..
T Consensus 199 ~d~~g~l~v~~~~~-----~~v~~~~~~~~~~~~~~~~----~~~~p~~i~~~~~g~l~v~~~~~-----~~v~~~~~~~ 264 (270)
T 1rwi_B 199 VDEAGTVYVTEHNT-----NQVVKLLAGSTTSTVLPFT----GLNTPLAVAVDSDRTVYVADRGN-----DRVVKLTSLE 264 (270)
T ss_dssp ECTTCCEEEEETTT-----SCEEEECTTCSCCEECCCC----SCSCEEEEEECTTCCEEEEEGGG-----TEEEEECCCG
T ss_pred ECCCCCEEEEECCC-----CcEEEEcCCCCcceeeccC----CCCCceeEEECCCCCEEEEECCC-----CEEEEEcCCC
Confidence 33343588865432 3599999876543332211 11112233332 56788887644 3477777643
No 171
>3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae}
Probab=94.62 E-value=4.3 Score=41.01 Aligned_cols=187 Identities=9% Similarity=0.044 Sum_probs=96.3
Q ss_pred CEEEEEcccCCCCCcccEEEEEcCCC--ceEEccccccCCCCCCCCCCCcccceEEEEECCEEEEEeccCCCCCCceEEE
Q 005043 99 NKMIVVGGESGNGLLDDVQVLNFDRF--SWTAASSKLYLSPSSLPLKIPACRGHSLISWGKKVLLVGGKTDSGSDRVSVW 176 (717)
Q Consensus 99 ~~lyV~GG~~~~~~~~~v~~yd~~t~--~W~~l~~~~~~~~~~~~~~~p~r~~hs~v~~~~~Iyv~GG~~~~~~~~~~v~ 176 (717)
+++++.|..+ +.+.++|+.+. .|+.-... .....+..+.-+++||+.+. +.+.
T Consensus 5 ~~~lv~~~~~-----~~v~~~d~~tG~~~w~~~~~~------------~~~~~~~~~~pdG~ilvs~~--------~~V~ 59 (276)
T 3no2_A 5 QHLLVGGSGW-----NKIAIINKDTKEIVWEYPLEK------------GWECNSVAATKAGEILFSYS--------KGAK 59 (276)
T ss_dssp CEEEEECTTC-----SEEEEEETTTTEEEEEEECCT------------TCCCCEEEECTTSCEEEECB--------SEEE
T ss_pred CcEEEeeCCC-----CEEEEEECCCCeEEEEeCCCc------------cCCCcCeEECCCCCEEEeCC--------CCEE
Confidence 5677776543 36889999776 57765431 01112233334777887321 2599
Q ss_pred EEECCCCc--EEEeeecCCCCCCceeeEEEEE-CCEEEEEccccCCCCCcCcEEEEEcCCCc-eEeccCCCCC--CCCCc
Q 005043 177 TFDTETEC--WSVVEAKGDIPVARSGHTVVRA-SSVLILFGGEDGKRRKLNDLHMFDLKSLT-WLPLHCTGTG--PSPRS 250 (717)
Q Consensus 177 ~yD~~t~~--W~~l~~~g~~P~~R~~hs~~~~-~~~Lyv~GG~~~~~~~~~~v~~yD~~t~~-W~~l~~~g~~--P~~R~ 250 (717)
.||+ +++ |+.-. +.....+++... ++.+++..+.. ...++.+|+.... |+.... +.. +....
T Consensus 60 ~~d~-~G~~~W~~~~-----~~~~~~~~~~~~~dG~~lv~~~~~-----~~~v~~vd~~Gk~l~~~~~~-~~~~~~~~~~ 127 (276)
T 3no2_A 60 MITR-DGRELWNIAA-----PAGCEMQTARILPDGNALVAWCGH-----PSTILEVNMKGEVLSKTEFE-TGIERPHAQF 127 (276)
T ss_dssp EECT-TSCEEEEEEC-----CTTCEEEEEEECTTSCEEEEEEST-----TEEEEEECTTSCEEEEEEEC-CSCSSGGGSC
T ss_pred EECC-CCCEEEEEcC-----CCCccccccEECCCCCEEEEecCC-----CCEEEEEeCCCCEEEEEecc-CCCCcccccc
Confidence 9999 443 76543 221223344443 55666654321 2357888875432 443211 111 11111
Q ss_pred ccEEEEECCcEEEEEcCCCCCCCCCeEEEEECCCCc-EEEeecCCCCCCCCcceEEEEE-CCEEEEEecCCCCCccCeEE
Q 005043 251 NHVAALYDDKNLLIFGGSSKSKTLNDLYSLDFETMI-WTRIKIRGFHPSPRAGCCGVLC-GTKWYIAGGGSRKKRHAETL 328 (717)
Q Consensus 251 ~~aa~~~~~~~lyV~GG~~~~~~~ndv~~yd~~t~~-W~~v~~~g~~P~~R~~~sav~~-~~~IyV~GG~~~~~~~~dv~ 328 (717)
.......++. +++....+ ..|..||++... |+.-.. ..| +++... ++.++|.+... ..++
T Consensus 128 ~~v~~~~~G~-~lv~~~~~-----~~v~~~d~~G~~~w~~~~~--~~~-----~~~~~~~~g~~~v~~~~~-----~~v~ 189 (276)
T 3no2_A 128 RQINKNKKGN-YLVPLFAT-----SEVREIAPNGQLLNSVKLS--GTP-----FSSAFLDNGDCLVACGDA-----HCFV 189 (276)
T ss_dssp SCCEECTTSC-EEEEETTT-----TEEEEECTTSCEEEEEECS--SCC-----CEEEECTTSCEEEECBTT-----SEEE
T ss_pred cCceECCCCC-EEEEecCC-----CEEEEECCCCCEEEEEECC--CCc-----cceeEcCCCCEEEEeCCC-----CeEE
Confidence 2223333455 55544322 459999997322 553321 111 233333 67888877643 3589
Q ss_pred EEECCCC--cEEEe
Q 005043 329 IFDILKG--EWSVA 340 (717)
Q Consensus 329 ~yD~~t~--~W~~l 340 (717)
.||+.+. .|+.-
T Consensus 190 ~~d~~tG~~~w~~~ 203 (276)
T 3no2_A 190 QLNLESNRIVRRVN 203 (276)
T ss_dssp EECTTTCCEEEEEE
T ss_pred EEeCcCCcEEEEec
Confidence 9999855 46653
No 172
>2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A
Probab=94.61 E-value=1.8 Score=44.01 Aligned_cols=193 Identities=10% Similarity=0.071 Sum_probs=95.9
Q ss_pred CCEEEEEeccCCCCCCceEEEEEECCCCcEEEeeecCCCCCCceeeEEEEECCEEEEEccccCCCCCcCcEEEEEcCCCc
Q 005043 156 GKKVLLVGGKTDSGSDRVSVWTFDTETECWSVVEAKGDIPVARSGHTVVRASSVLILFGGEDGKRRKLNDLHMFDLKSLT 235 (717)
Q Consensus 156 ~~~Iyv~GG~~~~~~~~~~v~~yD~~t~~W~~l~~~g~~P~~R~~hs~~~~~~~Lyv~GG~~~~~~~~~~v~~yD~~t~~ 235 (717)
++.+++.|+.+ ..+.+||..+..-...-. ............-++.+++.|+.+ ..+.+||+.+..
T Consensus 24 ~~~~l~s~~~d------g~v~lWd~~~~~~~~~~~---~~~~~v~~~~~~~~~~~l~s~s~d------~~i~vwd~~~~~ 88 (304)
T 2ynn_A 24 TEPWVLTTLYS------GRVELWNYETQVEVRSIQ---VTETPVRAGKFIARKNWIIVGSDD------FRIRVFNYNTGE 88 (304)
T ss_dssp SSSEEEEEETT------SEEEEEETTTTEEEEEEE---CCSSCEEEEEEEGGGTEEEEEETT------SEEEEEETTTCC
T ss_pred CCCEEEEEcCC------CcEEEEECCCCceeEEee---ccCCcEEEEEEeCCCCEEEEECCC------CEEEEEECCCCc
Confidence 45667777753 268888998876433221 111111222222345677777654 347888987765
Q ss_pred eEe-ccCCCCCCCCCcccEEEEECCcEEEEEcCCCCCCCCCeEEEEECCCCcEEEeecCCCCCCCCcceEEEEE--CCEE
Q 005043 236 WLP-LHCTGTGPSPRSNHVAALYDDKNLLIFGGSSKSKTLNDLYSLDFETMIWTRIKIRGFHPSPRAGCCGVLC--GTKW 312 (717)
Q Consensus 236 W~~-l~~~g~~P~~R~~~aa~~~~~~~lyV~GG~~~~~~~ndv~~yd~~t~~W~~v~~~g~~P~~R~~~sav~~--~~~I 312 (717)
-.. +. . ....-.+++...+..+++.|+.++ .|..||+.+.. ....... .....-.+++.. ++.+
T Consensus 89 ~~~~~~---~--h~~~v~~~~~~~~~~~l~sgs~D~-----~v~lWd~~~~~-~~~~~~~--~h~~~v~~v~~~p~~~~~ 155 (304)
T 2ynn_A 89 KVVDFE---A--HPDYIRSIAVHPTKPYVLSGSDDL-----TVKLWNWENNW-ALEQTFE--GHEHFVMCVAFNPKDPST 155 (304)
T ss_dssp EEEEEE---C--CSSCEEEEEECSSSSEEEEEETTS-----CEEEEEGGGTT-EEEEEEC--CCCSCEEEEEECTTCTTE
T ss_pred EEEEEe---C--CCCcEEEEEEcCCCCEEEEECCCC-----eEEEEECCCCc-chhhhhc--ccCCcEEEEEECCCCCCE
Confidence 322 11 1 111222344444443677777654 48889987652 1111110 111112233332 4567
Q ss_pred EEEecCCCCCccCeEEEEECCCCcEEEeecCCCCCCCCCcceEEEEEEeCCCcEEEEEcCCCCCCCCeEEEEEccCCc
Q 005043 313 YIAGGGSRKKRHAETLIFDILKGEWSVAITSPSSSVTSNKGFTLVLVQHKEKDFLVAFGGIKKEPSNQVEVLSIEKNE 390 (717)
Q Consensus 313 yV~GG~~~~~~~~dv~~yD~~t~~W~~l~~~p~~~~~~r~g~s~v~v~~~~~~~I~v~GG~~~~~~n~v~vyd~~~~e 390 (717)
++.|+.++ .+.+||+.+..-..... . ....+...+.+....++.+++.|+.++ .|.+||+.+.+
T Consensus 156 l~sgs~D~-----~v~iwd~~~~~~~~~~~-~----~~~~~v~~~~~~~~~~~~~l~s~s~D~----~i~iWd~~~~~ 219 (304)
T 2ynn_A 156 FASGCLDR-----TVKVWSLGQSTPNFTLT-T----GQERGVNYVDYYPLPDKPYMITASDDL----TIKIWDYQTKS 219 (304)
T ss_dssp EEEEETTS-----EEEEEETTCSSCSEEEE-C----CCTTCEEEEEECCSTTCCEEEEEETTS----EEEEEETTTTE
T ss_pred EEEEeCCC-----eEEEEECCCCCccceec-c----CCcCcEEEEEEEEcCCCCEEEEEcCCC----eEEEEeCCCCc
Confidence 88888664 48889986543111110 0 011222333332223444666666543 67888887654
No 173
>3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B*
Probab=94.52 E-value=2.8 Score=43.55 Aligned_cols=190 Identities=9% Similarity=0.047 Sum_probs=101.6
Q ss_pred EEEEEeccCCCCCCceEEEEEECCCCcEEEeeecCCCCCCceeeEEEEEC--CEEEEEccccCCCCCcCcEEEEEcCCCc
Q 005043 158 KVLLVGGKTDSGSDRVSVWTFDTETECWSVVEAKGDIPVARSGHTVVRAS--SVLILFGGEDGKRRKLNDLHMFDLKSLT 235 (717)
Q Consensus 158 ~Iyv~GG~~~~~~~~~~v~~yD~~t~~W~~l~~~g~~P~~R~~hs~~~~~--~~Lyv~GG~~~~~~~~~~v~~yD~~t~~ 235 (717)
.+++.|+.+. .+.+||+.+......... ......-.+++... +.+++.|+.+ ..+.+||+.+..
T Consensus 87 ~~l~s~~~dg------~i~iwd~~~~~~~~~~~~--~~h~~~v~~~~~~~~~~~~l~s~~~d------~~i~iwd~~~~~ 152 (383)
T 3ei3_B 87 TTVAVGSKGG------DIILWDYDVQNKTSFIQG--MGPGDAITGMKFNQFNTNQLFVSSIR------GATTLRDFSGSV 152 (383)
T ss_dssp TEEEEEEBTS------CEEEEETTSTTCEEEECC--CSTTCBEEEEEEETTEEEEEEEEETT------TEEEEEETTSCE
T ss_pred CEEEEEcCCC------eEEEEeCCCcccceeeec--CCcCCceeEEEeCCCCCCEEEEEeCC------CEEEEEECCCCc
Confidence 5777777642 588999988776654320 11222223444443 4677777654 348889998776
Q ss_pred eEeccCCCCCCCCCcccEEEEECCcEEEEEcCCCCCCCCCeEEEEECCCCcEEEeecCCCCCCCCcceEEEEE-CCE-EE
Q 005043 236 WLPLHCTGTGPSPRSNHVAALYDDKNLLIFGGSSKSKTLNDLYSLDFETMIWTRIKIRGFHPSPRAGCCGVLC-GTK-WY 313 (717)
Q Consensus 236 W~~l~~~g~~P~~R~~~aa~~~~~~~lyV~GG~~~~~~~ndv~~yd~~t~~W~~v~~~g~~P~~R~~~sav~~-~~~-Iy 313 (717)
...+.. .......-.+++...+..+++.|+.+ ..+..||+....-..+... ...-.+++.. ++. ++
T Consensus 153 ~~~~~~--~~~~~~~v~~~~~~~~~~~l~~~~~d-----~~i~i~d~~~~~~~~~~~h-----~~~v~~~~~~~~~~~~l 220 (383)
T 3ei3_B 153 IQVFAK--TDSWDYWYCCVDVSVSRQMLATGDST-----GRLLLLGLDGHEIFKEKLH-----KAKVTHAEFNPRCDWLM 220 (383)
T ss_dssp EEEEEC--CCCSSCCEEEEEEETTTTEEEEEETT-----SEEEEEETTSCEEEEEECS-----SSCEEEEEECSSCTTEE
T ss_pred eEEEec--cCCCCCCeEEEEECCCCCEEEEECCC-----CCEEEEECCCCEEEEeccC-----CCcEEEEEECCCCCCEE
Confidence 665541 11111122233444443367777765 3699999865544444321 1112222222 344 77
Q ss_pred EEecCCCCCccCeEEEEECCC----CcEEEeecCCCCCCCCCcceEEEEEEeCCCcEEEEEcCCCCCCCCeEEEEEccCC
Q 005043 314 IAGGGSRKKRHAETLIFDILK----GEWSVAITSPSSSVTSNKGFTLVLVQHKEKDFLVAFGGIKKEPSNQVEVLSIEKN 389 (717)
Q Consensus 314 V~GG~~~~~~~~dv~~yD~~t----~~W~~l~~~p~~~~~~r~g~s~v~v~~~~~~~I~v~GG~~~~~~n~v~vyd~~~~ 389 (717)
+.|+.++ .+.+||+.+ ........ .......+.+. +.++.+++.|+.+ ..+.+||+.+.
T Consensus 221 ~s~~~d~-----~i~iwd~~~~~~~~~~~~~~~-------~~~~v~~~~~s-~~~~~~l~~~~~d----~~i~iwd~~~~ 283 (383)
T 3ei3_B 221 ATSSVDA-----TVKLWDLRNIKDKNSYIAEMP-------HEKPVNAAYFN-PTDSTKLLTTDQR----NEIRVYSSYDW 283 (383)
T ss_dssp EEEETTS-----EEEEEEGGGCCSTTCEEEEEE-------CSSCEEEEEEC-TTTSCEEEEEESS----SEEEEEETTBT
T ss_pred EEEeCCC-----EEEEEeCCCCCcccceEEEec-------CCCceEEEEEc-CCCCCEEEEEcCC----CcEEEEECCCC
Confidence 7887653 488999876 33332221 11122333332 2134455666653 36899998776
Q ss_pred c
Q 005043 390 E 390 (717)
Q Consensus 390 e 390 (717)
+
T Consensus 284 ~ 284 (383)
T 3ei3_B 284 S 284 (383)
T ss_dssp T
T ss_pred c
Confidence 5
No 174
>3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae}
Probab=94.48 E-value=1.4 Score=46.88 Aligned_cols=155 Identities=15% Similarity=0.207 Sum_probs=79.1
Q ss_pred CCEEEEEccccCCCCCcCcEEEEEcCCCceEeccCCCCCCCCCcccEEEEECCcEEEEEcCCCCCCCCCeEEEEECCCCc
Q 005043 207 SSVLILFGGEDGKRRKLNDLHMFDLKSLTWLPLHCTGTGPSPRSNHVAALYDDKNLLIFGGSSKSKTLNDLYSLDFETMI 286 (717)
Q Consensus 207 ~~~Lyv~GG~~~~~~~~~~v~~yD~~t~~W~~l~~~g~~P~~R~~~aa~~~~~~~lyV~GG~~~~~~~ndv~~yd~~t~~ 286 (717)
++.+++.|+.+ ..+.+||+.+.+-...-. ..+....-.+++...+..+++.|+.++ .+.+||+.+..
T Consensus 181 ~~~~l~~~~~d------~~i~iwd~~~~~~~~~~~--~~~h~~~v~~~~~s~~~~~l~s~~~dg-----~i~iwd~~~~~ 247 (437)
T 3gre_A 181 EKSLLVALTNL------SRVIIFDIRTLERLQIIE--NSPRHGAVSSICIDEECCVLILGTTRG-----IIDIWDIRFNV 247 (437)
T ss_dssp SCEEEEEEETT------SEEEEEETTTCCEEEEEE--CCGGGCCEEEEEECTTSCEEEEEETTS-----CEEEEETTTTE
T ss_pred CCCEEEEEeCC------CeEEEEeCCCCeeeEEEc--cCCCCCceEEEEECCCCCEEEEEcCCC-----eEEEEEcCCcc
Confidence 36777777654 358899998765332210 111111222333333443677777654 49999998866
Q ss_pred EEEeecCCCCCCCCcceEEE-EE-----CCEEEEEecCCCCCccCeEEEEECCCCcEEEeecCCCCCCC-----------
Q 005043 287 WTRIKIRGFHPSPRAGCCGV-LC-----GTKWYIAGGGSRKKRHAETLIFDILKGEWSVAITSPSSSVT----------- 349 (717)
Q Consensus 287 W~~v~~~g~~P~~R~~~sav-~~-----~~~IyV~GG~~~~~~~~dv~~yD~~t~~W~~l~~~p~~~~~----------- 349 (717)
....-.. +. ......+ .. ++.+++.|+.++ .+.+||+.+..-..........+.
T Consensus 248 ~~~~~~~---~~-~~~v~~~~~~~~~s~~~~~l~s~~~dg-----~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 318 (437)
T 3gre_A 248 LIRSWSF---GD-HAPITHVEVCQFYGKNSVIVVGGSSKT-----FLTIWNFVKGHCQYAFINSDEQPSMEHFLPIEKGL 318 (437)
T ss_dssp EEEEEBC---TT-CEEEEEEEECTTTCTTEEEEEEESTTE-----EEEEEETTTTEEEEEEESSSSCCCGGGGSCBCSSG
T ss_pred EEEEEec---CC-CCceEEEEeccccCCCccEEEEEcCCC-----cEEEEEcCCCcEEEEEEcCCCCCccceeccccccc
Confidence 5433211 11 1111222 11 345666666543 488999987653332211100000
Q ss_pred ---------CCcceEEEEEEeCCCcEEEEEcCCCCCCCCeEEEEEccCCc
Q 005043 350 ---------SNKGFTLVLVQHKEKDFLVAFGGIKKEPSNQVEVLSIEKNE 390 (717)
Q Consensus 350 ---------~r~g~s~v~v~~~~~~~I~v~GG~~~~~~n~v~vyd~~~~e 390 (717)
.......+.+. ++.+++.||.++ .|.+||+.+.+
T Consensus 319 ~~~~~~~~~~~~~v~~l~~~---~~~~l~s~~~d~----~i~~wd~~~~~ 361 (437)
T 3gre_A 319 EELNFCGIRSLNALSTISVS---NDKILLTDEATS----SIVMFSLNELS 361 (437)
T ss_dssp GGCCCCCCCSGGGGCCEEEE---TTEEEEEEGGGT----EEEEEETTCGG
T ss_pred ccceecccccCCceEEEEEC---CceEEEecCCCC----eEEEEECCCcc
Confidence 11112333443 446777777643 68999988765
No 175
>4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B*
Probab=94.44 E-value=0.27 Score=53.07 Aligned_cols=194 Identities=9% Similarity=0.039 Sum_probs=96.0
Q ss_pred CCEEEEEeccCCCCCCceEEEEEECCCCcEEEeeecCCCCCCceeeEEEEE--CCEEEEEccccCCCCCcCcEEEEEcCC
Q 005043 156 GKKVLLVGGKTDSGSDRVSVWTFDTETECWSVVEAKGDIPVARSGHTVVRA--SSVLILFGGEDGKRRKLNDLHMFDLKS 233 (717)
Q Consensus 156 ~~~Iyv~GG~~~~~~~~~~v~~yD~~t~~W~~l~~~g~~P~~R~~hs~~~~--~~~Lyv~GG~~~~~~~~~~v~~yD~~t 233 (717)
++.+++.|+.++ .|.+||+.+.....+.. .......-.+++.. ++.+++.||.++ .+.+||+.+
T Consensus 131 ~~~~lasGs~dg------~i~lWd~~~~~~~~~~~--~~gH~~~V~~l~f~p~~~~~l~s~s~D~------~v~iwd~~~ 196 (435)
T 4e54_B 131 HPSTVAVGSKGG------DIMLWNFGIKDKPTFIK--GIGAGGSITGLKFNPLNTNQFYASSMEG------TTRLQDFKG 196 (435)
T ss_dssp CTTCEEEEETTS------CEEEECSSCCSCCEEEC--CCSSSCCCCEEEECSSCTTEEEEECSSS------CEEEEETTS
T ss_pred CCCEEEEEeCCC------EEEEEECCCCCceeEEE--ccCCCCCEEEEEEeCCCCCEEEEEeCCC------EEEEeeccC
Confidence 456888888643 48888887765333221 01111222334443 456777777553 377889887
Q ss_pred CceEeccCCCCCCCCCcccEEEEECCcEEEEEcCCCCCCCCCeEEEEECCCCcEEEeecCCCCCCCCcceEEEEE---CC
Q 005043 234 LTWLPLHCTGTGPSPRSNHVAALYDDKNLLIFGGSSKSKTLNDLYSLDFETMIWTRIKIRGFHPSPRAGCCGVLC---GT 310 (717)
Q Consensus 234 ~~W~~l~~~g~~P~~R~~~aa~~~~~~~lyV~GG~~~~~~~ndv~~yd~~t~~W~~v~~~g~~P~~R~~~sav~~---~~ 310 (717)
.....+.... .......++....+..+++.|+.++ .|..||+....-..+. .......++.+ ++
T Consensus 197 ~~~~~~~~~~--~~~~~~~~~~~~~~~~~l~~g~~dg-----~i~~wd~~~~~~~~~~------~h~~~v~~v~~~p~~~ 263 (435)
T 4e54_B 197 NILRVFASSD--TINIWFCSLDVSASSRMVVTGDNVG-----NVILLNMDGKELWNLR------MHKKKVTHVALNPCCD 263 (435)
T ss_dssp CEEEEEECCS--SCSCCCCCEEEETTTTEEEEECSSS-----BEEEEESSSCBCCCSB------CCSSCEEEEEECTTCS
T ss_pred CceeEEeccC--CCCccEEEEEECCCCCEEEEEeCCC-----cEeeeccCcceeEEEe------cccceEEeeeecCCCc
Confidence 7655443111 1111222334444433777887654 4889998654321111 11112223333 34
Q ss_pred EEEEEecCCCCCccCeEEEEECCCCcEEEeecCCCCCCCCCcceEEEEEEeCCCcEEEEEcCCCCCCCCeEEEEEccCCc
Q 005043 311 KWYIAGGGSRKKRHAETLIFDILKGEWSVAITSPSSSVTSNKGFTLVLVQHKEKDFLVAFGGIKKEPSNQVEVLSIEKNE 390 (717)
Q Consensus 311 ~IyV~GG~~~~~~~~dv~~yD~~t~~W~~l~~~p~~~~~~r~g~s~v~v~~~~~~~I~v~GG~~~~~~n~v~vyd~~~~e 390 (717)
.+++.|+.++. |.+||+.+..-.... . ....-......+.+. .++..++.|+.++ .|.+||+.+.+
T Consensus 264 ~~~~s~s~d~~-----v~iwd~~~~~~~~~~--~-~~~~h~~~v~~~~~s--pdg~~l~s~~~D~----~i~iwd~~~~~ 329 (435)
T 4e54_B 264 WFLATASVDQT-----VKIWDLRQVRGKASF--L-YSLPHRHPVNAACFS--PDGARLLTTDQKS----EIRVYSASQWD 329 (435)
T ss_dssp SEEEEEETTSB-----CCEEETTTCCSSSCC--S-BCCBCSSCEEECCBC--TTSSEEEEEESSS----CEEEEESSSSS
T ss_pred eEEEEecCcce-----eeEEecccccccceE--E-EeeeccccccceeEC--CCCCeeEEEcCCC----EEEEEECCCCc
Confidence 57777776543 678888664321100 0 000011112222232 2344566777543 57888877644
No 176
>3g4e_A Regucalcin; six bladed beta-propeller, gluconolcatonase, organophosphate hydrolase, calcium bound, alternative splicing, cytoplasm, phosphoprotein; 1.42A {Homo sapiens} PDB: 3g4h_B
Probab=94.40 E-value=1.2 Score=45.27 Aligned_cols=213 Identities=13% Similarity=-0.009 Sum_probs=104.4
Q ss_pred CCEEEEEeccCCCCCCceEEEEEECCCCcEEEeeecCCCCCCceeeEEEEE-CCEEEEEccccCCCCCcCcEEEEEcCCC
Q 005043 156 GKKVLLVGGKTDSGSDRVSVWTFDTETECWSVVEAKGDIPVARSGHTVVRA-SSVLILFGGEDGKRRKLNDLHMFDLKSL 234 (717)
Q Consensus 156 ~~~Iyv~GG~~~~~~~~~~v~~yD~~t~~W~~l~~~g~~P~~R~~hs~~~~-~~~Lyv~GG~~~~~~~~~~v~~yD~~t~ 234 (717)
++.||+..-.. ..+++||+.+........ +. +. .+++.. ++.+|+.. .+.+++||+.+.
T Consensus 24 ~~~l~~~d~~~------~~i~~~d~~~~~~~~~~~----~~-~~-~~i~~~~dG~l~v~~--------~~~l~~~d~~~g 83 (297)
T 3g4e_A 24 SNSLLFVDIPA------KKVCRWDSFTKQVQRVTM----DA-PV-SSVALRQSGGYVATI--------GTKFCALNWKEQ 83 (297)
T ss_dssp TTEEEEEETTT------TEEEEEETTTCCEEEEEC----SS-CE-EEEEEBTTSSEEEEE--------TTEEEEEETTTT
T ss_pred CCEEEEEECCC------CEEEEEECCCCcEEEEeC----CC-ce-EEEEECCCCCEEEEE--------CCeEEEEECCCC
Confidence 47888886532 369999999887655442 21 12 233333 46666652 146999999999
Q ss_pred ceEeccCCCC-CCCCCcccEEEEECCcEEEEEcCCCC------CCCCCeEEEEECCCCcEEEeecCCCCCCCCcceEEEE
Q 005043 235 TWLPLHCTGT-GPSPRSNHVAALYDDKNLLIFGGSSK------SKTLNDLYSLDFETMIWTRIKIRGFHPSPRAGCCGVL 307 (717)
Q Consensus 235 ~W~~l~~~g~-~P~~R~~~aa~~~~~~~lyV~GG~~~------~~~~ndv~~yd~~t~~W~~v~~~g~~P~~R~~~sav~ 307 (717)
+++.+..... .+..+.. .+++..+..+|+..-... ......++++++.. ....+.... ....+.+.
T Consensus 84 ~~~~~~~~~~~~~~~~~~-di~~d~dG~l~~~~~~~~~~~~~~~~~~~~l~~~d~~g-~~~~~~~~~-----~~pngi~~ 156 (297)
T 3g4e_A 84 SAVVLATVDNDKKNNRFN-DGKVDPAGRYFAGTMAEETAPAVLERHQGALYSLFPDH-HVKKYFDQV-----DISNGLDW 156 (297)
T ss_dssp EEEEEEECCTTCSSEEEE-EEEECTTSCEEEEEEECCSBTTBCCTTCEEEEEECTTS-CEEEEEEEE-----SBEEEEEE
T ss_pred cEEEEEecCCCCCCCCCC-CEEECCCCCEEEecCCcccccccccCCCcEEEEEECCC-CEEEEeecc-----ccccceEE
Confidence 8877642211 1211222 223333333666321111 11234689998853 344332210 11123333
Q ss_pred E--CCEEEEEecCCCCCccCeEEEEEC--CCCcEEE---eecCCCCCCCCCcceEEEEEEeCCCcEEEEEcCCCCCCCCe
Q 005043 308 C--GTKWYIAGGGSRKKRHAETLIFDI--LKGEWSV---AITSPSSSVTSNKGFTLVLVQHKEKDFLVAFGGIKKEPSNQ 380 (717)
Q Consensus 308 ~--~~~IyV~GG~~~~~~~~dv~~yD~--~t~~W~~---l~~~p~~~~~~r~g~s~v~v~~~~~~~I~v~GG~~~~~~n~ 380 (717)
. +..+|+..... ..|++||. .+..... +...+.. ...-.+ +++. .++.||+..... +.
T Consensus 157 spdg~~lyv~~~~~-----~~i~~~~~d~~~G~~~~~~~~~~~~~~---~~~p~g-~~~d--~~G~lwva~~~~----~~ 221 (297)
T 3g4e_A 157 SLDHKIFYYIDSLS-----YSVDAFDYDLQTGQISNRRSVYKLEKE---EQIPDG-MCID--AEGKLWVACYNG----GR 221 (297)
T ss_dssp CTTSCEEEEEEGGG-----TEEEEEEECTTTCCEEEEEEEEECCGG---GCEEEE-EEEB--TTSCEEEEEETT----TE
T ss_pred cCCCCEEEEecCCC-----CcEEEEeccCCCCcccCcEEEEECCCC---CCCCCe-eEEC--CCCCEEEEEcCC----CE
Confidence 2 34688887543 45888886 4544421 1111100 011112 2232 245677653211 26
Q ss_pred EEEEEccCCcccCccccccCCCCCcEEEEeeC
Q 005043 381 VEVLSIEKNESSMGRRSTPNAKGPGQLLFEKR 412 (717)
Q Consensus 381 v~vyd~~~~eW~~~w~~~~~~~~p~~~~fgG~ 412 (717)
|.+||+.+.+-.... ..+ ...+..+.|+|-
T Consensus 222 v~~~d~~tG~~~~~i-~~p-~~~~t~~~f~g~ 251 (297)
T 3g4e_A 222 VIRLDPVTGKRLQTV-KLP-VDKTTSCCFGGK 251 (297)
T ss_dssp EEEECTTTCCEEEEE-ECS-SSBEEEEEEESG
T ss_pred EEEEcCCCceEEEEE-ECC-CCCceEEEEeCC
Confidence 999999876632211 111 134455677753
No 177
>2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae}
Probab=94.33 E-value=2.9 Score=44.93 Aligned_cols=160 Identities=9% Similarity=0.002 Sum_probs=81.5
Q ss_pred CEEEEEeccCCCCCCceEEEEEECCCCcEEEeeecCCCCCCceeeEEEEECCEEEEEccccCCCCCcCcEEEEEcCCCce
Q 005043 157 KKVLLVGGKTDSGSDRVSVWTFDTETECWSVVEAKGDIPVARSGHTVVRASSVLILFGGEDGKRRKLNDLHMFDLKSLTW 236 (717)
Q Consensus 157 ~~Iyv~GG~~~~~~~~~~v~~yD~~t~~W~~l~~~g~~P~~R~~hs~~~~~~~Lyv~GG~~~~~~~~~~v~~yD~~t~~W 236 (717)
+.+++.|+.+ ..+.+||+.+......-..+ ......+.+.. ++.+++.||.+ ..+.+||+.+.+.
T Consensus 210 ~~~l~s~~~d------~~i~vwd~~~~~~~~~~~~~--h~~~v~~~~~s-d~~~l~s~~~d------~~v~vwd~~~~~~ 274 (450)
T 2vdu_B 210 HQFIITSDRD------EHIKISHYPQCFIVDKWLFG--HKHFVSSICCG-KDYLLLSAGGD------DKIFAWDWKTGKN 274 (450)
T ss_dssp CEEEEEEETT------SCEEEEEESCTTCEEEECCC--CSSCEEEEEEC-STTEEEEEESS------SEEEEEETTTCCE
T ss_pred CcEEEEEcCC------CcEEEEECCCCceeeeeecC--CCCceEEEEEC-CCCEEEEEeCC------CeEEEEECCCCcE
Confidence 7788888764 25888888776543321101 11112222222 67777777743 3588899887764
Q ss_pred EeccCCCC----------C-----------CCCCcccEEEEEC-CcEEEEEcCCCCCCCCCeEEEEEC--CC-CcEEEee
Q 005043 237 LPLHCTGT----------G-----------PSPRSNHVAALYD-DKNLLIFGGSSKSKTLNDLYSLDF--ET-MIWTRIK 291 (717)
Q Consensus 237 ~~l~~~g~----------~-----------P~~R~~~aa~~~~-~~~lyV~GG~~~~~~~ndv~~yd~--~t-~~W~~v~ 291 (717)
...-..+. . +.......++... ++.+++.++.+ +.|.+|++ .+ ..+..+.
T Consensus 275 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~~d-----~~i~iw~~~~~~~~~l~~~~ 349 (450)
T 2vdu_B 275 LSTFDYNSLIKPYLNDQHLAPPRFQNENNDIIEFAVSKIIKSKNLPFVAFFVEAT-----KCIIILEMSEKQKGDLALKQ 349 (450)
T ss_dssp EEEEECHHHHGGGCCTTSBC----------CBCCCEEEEEECSSSSEEEEEETTC-----SEEEEEEECSSSTTCEEEEE
T ss_pred eeeecchhhhhhhhhhcccccccccccccccceEEEEEEEEeCCCCEEEEEECCC-----CeEEEEEeccCCCCceeecc
Confidence 32210000 0 1111122233333 44344433232 35888888 33 4555554
Q ss_pred cCCCCCCCCcceEEEEECCEEEEEecCCCC----CccCeEEEEECCCCcEEE
Q 005043 292 IRGFHPSPRAGCCGVLCGTKWYIAGGGSRK----KRHAETLIFDILKGEWSV 339 (717)
Q Consensus 292 ~~g~~P~~R~~~sav~~~~~IyV~GG~~~~----~~~~dv~~yD~~t~~W~~ 339 (717)
.. +......+++...+.+++..+.... ...-.+|.++..++.|..
T Consensus 350 ~~---~~~~~v~~~~~~~~~~~v~~~~~~~~~~~~~~i~v~~~~~~~~~~~~ 398 (450)
T 2vdu_B 350 II---TFPYNVISLSAHNDEFQVTLDNKESSGVQKNFAKFIEYNLNENSFVV 398 (450)
T ss_dssp EE---ECSSCEEEEEEETTEEEEEECCTTCCSSCCCSEEEEEEETTTTEEEE
T ss_pred Ee---ccCCceEEEEecCCcEEEEEecccCCCCCCcceEEEEEEcCCCeEEE
Confidence 32 1222233445556777777664321 223477888888888863
No 178
>1yr2_A Prolyl oligopeptidase; prolyl endopeptidase, mechanistic study, celiac sprue, hydro; 1.80A {Novosphingobium capsulatum}
Probab=94.31 E-value=2.1 Score=49.84 Aligned_cols=213 Identities=13% Similarity=0.103 Sum_probs=107.8
Q ss_pred CCEEEEEcccCCCCCcccEEEEEcCCCceEEccccccCCCCCCCCCCCcccceEEEEECCEEEEEeccCCC--------C
Q 005043 98 GNKMIVVGGESGNGLLDDVQVLNFDRFSWTAASSKLYLSPSSLPLKIPACRGHSLISWGKKVLLVGGKTDS--------G 169 (717)
Q Consensus 98 ~~~lyV~GG~~~~~~~~~v~~yd~~t~~W~~l~~~~~~~~~~~~~~~p~r~~hs~v~~~~~Iyv~GG~~~~--------~ 169 (717)
+++.++++...+..-...++++|+.++.+...... ......++...++-++++..... .
T Consensus 173 DG~~la~~~~~~G~e~~~i~v~dl~tg~~~~~~~~-------------~~~~~~~~wspD~~l~~~~~~~~~~~~~~~~~ 239 (741)
T 1yr2_A 173 DGRLLAYSVQDGGSDWRTVKFVGVADGKPLADELK-------------WVKFSGLAWLGNDALLYSRFAEPKEGQAFQAL 239 (741)
T ss_dssp TSSEEEEEEEETTCSEEEEEEEETTTCCEEEEEEE-------------EEESCCCEESTTSEEEEEECCCC--------C
T ss_pred CCCEEEEEEcCCCCceEEEEEEECCCCCCCCccCC-------------CceeccEEEECCCEEEEEEecCcccccccccC
Confidence 55555555433222234799999999887654221 00001111111133333333221 1
Q ss_pred CCceEEEEEECCCCcE--EEeeecCCCCCCceeeEEEE-ECCEEEEEccccCCCCCcCcEEEEEcCCC--c-eEeccCCC
Q 005043 170 SDRVSVWTFDTETECW--SVVEAKGDIPVARSGHTVVR-ASSVLILFGGEDGKRRKLNDLHMFDLKSL--T-WLPLHCTG 243 (717)
Q Consensus 170 ~~~~~v~~yD~~t~~W--~~l~~~g~~P~~R~~hs~~~-~~~~Lyv~GG~~~~~~~~~~v~~yD~~t~--~-W~~l~~~g 243 (717)
.....+|++++.+..- ..+.. ....+........ -+++.+++...... ...+++|++|+.+. . |..+..
T Consensus 240 ~~~~~v~~~~lgt~~~~~~lv~~--~~~~~~~~~~~~~SpDG~~l~~~~~~~~-~~~~~l~~~d~~~~~~~~~~~l~~-- 314 (741)
T 1yr2_A 240 NYNQTVWLHRLGTPQSADQPVFA--TPELPKRGHGASVSSDGRWVVITSSEGT-DPVNTVHVARVTNGKIGPVTALIP-- 314 (741)
T ss_dssp CCCCEEEEEETTSCGGGCEEEEC--CTTCTTCEEEEEECTTSCEEEEEEECTT-CSCCEEEEEEEETTEECCCEEEEC--
T ss_pred CCCCEEEEEECCCCchhCEEEec--cCCCCeEEEEEEECCCCCEEEEEEEccC-CCcceEEEEECCCCCCcccEEecC--
Confidence 1234699999877652 22221 1111222223323 24544444333221 12578999999887 6 887752
Q ss_pred CCCCCCcccEEEEECCcEEEEEcCCCCCCCCCeEEEEECCC--CcEEEeecCCCCCCCCcceEEEEECCEEEEEecCCCC
Q 005043 244 TGPSPRSNHVAALYDDKNLLIFGGSSKSKTLNDLYSLDFET--MIWTRIKIRGFHPSPRAGCCGVLCGTKWYIAGGGSRK 321 (717)
Q Consensus 244 ~~P~~R~~~aa~~~~~~~lyV~GG~~~~~~~ndv~~yd~~t--~~W~~v~~~g~~P~~R~~~sav~~~~~IyV~GG~~~~ 321 (717)
..... ...+..+++.||+....+ .....++.+|+.+ ..|+.+.... . .........++++++....++.
T Consensus 315 -~~~~~--~~~~~~dg~~l~~~s~~~--~~~~~l~~~d~~~~~~~~~~l~~~~--~--~~l~~~~~~~~~lv~~~~~dg~ 385 (741)
T 1yr2_A 315 -DLKAQ--WDFVDGVGDQLWFVSGDG--APLKKIVRVDLSGSTPRFDTVVPES--K--DNLESVGIAGNRLFASYIHDAK 385 (741)
T ss_dssp -SSSSC--EEEEEEETTEEEEEECTT--CTTCEEEEEECSSSSCEEEEEECCC--S--SEEEEEEEEBTEEEEEEEETTE
T ss_pred -CCCce--EEEEeccCCEEEEEECCC--CCCCEEEEEeCCCCccccEEEecCC--C--CeEEEEEEECCEEEEEEEECCE
Confidence 11111 222234566577665432 2245799999988 5799886431 1 1122233447888887764432
Q ss_pred CccCeEEEEECCCCcEEEe
Q 005043 322 KRHAETLIFDILKGEWSVA 340 (717)
Q Consensus 322 ~~~~dv~~yD~~t~~W~~l 340 (717)
..+|.+|+....-..+
T Consensus 386 ---~~l~~~~~~g~~~~~l 401 (741)
T 1yr2_A 386 ---SQVLAFDLDGKPAGAV 401 (741)
T ss_dssp ---EEEEEEETTSCEEEEC
T ss_pred ---EEEEEEeCCCCceeec
Confidence 4688999866544443
No 179
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A
Probab=94.27 E-value=0.072 Score=66.04 Aligned_cols=89 Identities=15% Similarity=0.174 Sum_probs=27.5
Q ss_pred hhHHHHHHHhhHHHHHhhhhhHHhhHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhcccccccccCCccchhhHHHHHH
Q 005043 585 LEGQLAAALVNREAAEKNFSSVLKSRQEMEKKLADSLKEMELLKEKLAGLELAQEEANSLSNIVHSDNVRLEHDVAFLKA 664 (717)
Q Consensus 585 ~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 664 (717)
++.++......++++++.+....+..++++.++....++++.|+++++.++...++...--.-....--.+|.+++-|+.
T Consensus 883 le~~l~~Le~e~~~l~~~L~~e~~~l~~~e~~l~~l~~~~~~Le~~l~ele~elee~ee~l~el~~e~~~le~el~~L~~ 962 (1184)
T 1i84_S 883 LEQKHTQLCEEKNLLQEKLQAETELYAEAEEMRVRLAAKKQELEEILHEMEARIEEEEERSQQLQAEKKKMQQQMLDLEE 962 (1184)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC--------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444444444444444445555555555555555554443332222222222233334444444444
Q ss_pred HHHHHHHHh
Q 005043 665 VLDDTQKEL 673 (717)
Q Consensus 665 ~~~~~~~~~ 673 (717)
-+++.++++
T Consensus 963 eleele~~l 971 (1184)
T 1i84_S 963 QLEEEEAAR 971 (1184)
T ss_dssp ---------
T ss_pred HHHHHHHHH
Confidence 444443333
No 180
>3ol1_A Vimentin; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, structural protein; 2.81A {Homo sapiens} PDB: 3uf1_A
Probab=94.23 E-value=0.4 Score=42.84 Aligned_cols=98 Identities=19% Similarity=0.259 Sum_probs=64.7
Q ss_pred CchHHHHHHHHHHH-------HHHHhcchhHHHHHHHhhHHHHHhhhhhHHhhHHHHHHHHHHHHHHHHHHHHHHhhhhh
Q 005043 564 PSSIYQFYESKMAA-------LIRKNGILEGQLAAALVNREAAEKNFSSVLKSRQEMEKKLADSLKEMELLKEKLAGLEL 636 (717)
Q Consensus 564 ~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 636 (717)
+|.++..|+..|.+ +...++.|+.|+.-+....|...++...-+..|+.+|..+..+-|++...--.-..+|.
T Consensus 11 ~~~~~~~ye~~I~~LR~qid~~~~e~a~l~leldn~~~~~edfk~KyE~E~~~r~~~E~di~~lrK~lD~~~l~r~dLE~ 90 (119)
T 3ol1_A 11 MSRLGDLYEEEMRELRRQVDQLTNDKARVEVERDNLAEDIMRLREKLQEEMLQREEAENTLQSFRQDVDNASLARLDLER 90 (119)
T ss_dssp --CCTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhhhcccHHHHHHHHHHH
Confidence 35566666665554 55677888888888888888888888888888888888777766665542222222220
Q ss_pred hhhhhcccccccccCCccchhhHHHHHHHHHHHHHHhhh
Q 005043 637 AQEEANSLSNIVHSDNVRLEHDVAFLKAVLDDTQKELHS 675 (717)
Q Consensus 637 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 675 (717)
+. -.|.-|++|||.+-++-=+||++
T Consensus 91 ---~i-----------esL~eEl~FLKk~heeEl~eLq~ 115 (119)
T 3ol1_A 91 ---KV-----------ESLQEEIAFLKKLHEEEIQELQA 115 (119)
T ss_dssp ---HH-----------HHHHHHHHHHHHHHHHHHHHHHS
T ss_pred ---HH-----------HHHHHHHHHHHHHHHHHHHHHHH
Confidence 00 12457899999998876666654
No 181
>2mad_H Methylamine dehydrogenase (heavy subunit); oxidoreductase(CHNH2(D)-deaminating); HET: TRQ; 2.25A {Paracoccus versutus} SCOP: b.69.2.1 PDB: 1mae_H* 1maf_H*
Probab=94.22 E-value=6.7 Score=41.57 Aligned_cols=86 Identities=12% Similarity=0.095 Sum_probs=46.3
Q ss_pred CCEEEEEecCCC----CCccCeEEEEECCCCcE-EEeecCCCCCCCCCcceEEEEEEeCCCc-EEEEEcCCCCCCCCeEE
Q 005043 309 GTKWYIAGGGSR----KKRHAETLIFDILKGEW-SVAITSPSSSVTSNKGFTLVLVQHKEKD-FLVAFGGIKKEPSNQVE 382 (717)
Q Consensus 309 ~~~IyV~GG~~~----~~~~~dv~~yD~~t~~W-~~l~~~p~~~~~~r~g~s~v~v~~~~~~-~I~v~GG~~~~~~n~v~ 382 (717)
++++||...... ....++|+++|+.+.+- ..++ . +...+++... . ++. .+|+..+. .+.|.
T Consensus 278 ~~~lyV~~~~~~~~~~~~~~~~V~VID~~t~~vv~~i~---~----g~~p~~i~~s-~-Dg~~~l~v~~~~----~~~V~ 344 (373)
T 2mad_H 278 SDGIYLLTSEQSAWKLHAAAKEVTSVTGLVGQTSSQIS---L----GHDVDAISVA-Q-DGGPDLYALSAG----TEVLH 344 (373)
T ss_pred CCEEEEEeccCCcccccCCCCeEEEEECCCCEEEEEEE---C----CCCcCeEEEC-C-CCCeEEEEEcCC----CCeEE
Confidence 578999764321 12346899999988665 2332 1 1122333333 2 233 45554321 25899
Q ss_pred EEEccCCcccCccccccCCCCCcEEEE
Q 005043 383 VLSIEKNESSMGRRSTPNAKGPGQLLF 409 (717)
Q Consensus 383 vyd~~~~eW~~~w~~~~~~~~p~~~~f 409 (717)
+||..+.+-... ....+..|..+++
T Consensus 345 ViD~~t~~vv~~--i~~vG~~P~~~~~ 369 (373)
T 2mad_H 345 IYDAGAGDQDQS--TVELGSGPQVLSV 369 (373)
T ss_pred EEECCCCCEEee--ecCCCCCCcEEEE
Confidence 999998773221 1234555655443
No 182
>1flg_A Protein (quinoprotein ethanol dehydrogenase); superbarrel, oxidoreductase; HET: PQQ; 2.60A {Pseudomonas aeruginosa} SCOP: b.70.1.1
Probab=94.20 E-value=7.3 Score=44.12 Aligned_cols=123 Identities=20% Similarity=0.164 Sum_probs=68.6
Q ss_pred EEEEECCEEEEEcccCCCCCcccEEEEEcCCC--ceEEccccccCCCCCCCCCCCcc--cceEEEEECCEEEEEeccCCC
Q 005043 93 AAAVIGNKMIVVGGESGNGLLDDVQVLNFDRF--SWTAASSKLYLSPSSLPLKIPAC--RGHSLISWGKKVLLVGGKTDS 168 (717)
Q Consensus 93 aav~~~~~lyV~GG~~~~~~~~~v~~yd~~t~--~W~~l~~~~~~~~~~~~~~~p~r--~~hs~v~~~~~Iyv~GG~~~~ 168 (717)
+-++.++.||+.+... .++.+|..+. .|+.-..... ...+.+ ...+.++.+++||+...
T Consensus 63 ~P~v~~g~vyv~~~~~------~v~AlD~~tG~~~W~~~~~~~~-------~~~~~~~~~~~g~a~~~~~v~~~t~---- 125 (582)
T 1flg_A 63 QAIVSDGVIYVTASYS------RLFALDAKTGKRLWTYNHRLPD-------DIRPCCDVVNRGAAIYGDKVFFGTL---- 125 (582)
T ss_dssp CCEEETTEEEEEETTT------EEEEEESSSCCEEEEEECCCCT-------TCCCSSCSCCCCCEEETTEEEEEET----
T ss_pred ccEEECCEEEEEcCCC------CEEEEECCCCcEEEEEcCCCCc-------ccccccccCCCccEEECCEEEEEeC----
Confidence 4466899999987632 3899999876 6987544210 000111 01234567899888532
Q ss_pred CCCceEEEEEECCCCc--EEEeeecCCCCCC--ceeeEEEEECC------EEEEEccccCCCCCcCcEEEEEcCCCc--e
Q 005043 169 GSDRVSVWTFDTETEC--WSVVEAKGDIPVA--RSGHTVVRASS------VLILFGGEDGKRRKLNDLHMFDLKSLT--W 236 (717)
Q Consensus 169 ~~~~~~v~~yD~~t~~--W~~l~~~g~~P~~--R~~hs~~~~~~------~Lyv~GG~~~~~~~~~~v~~yD~~t~~--W 236 (717)
...++.+|..|++ |+.-.. .+.. ....+-++.++ .+|+ |........-..++.||+.+.+ |
T Consensus 126 ---dg~l~AlD~~TG~~~W~~~~~---~~~~~~~~~~sP~v~~~~~~G~~~v~v-g~~~~e~~~~g~v~alD~~tG~~~W 198 (582)
T 1flg_A 126 ---DASVVALNKNTGKVVWKKKFA---DHGAGYTMTGAPTIVKDGKTGKVLLIH-GSSGDEFGVVGRLFARDPDTGEEIW 198 (582)
T ss_dssp ---TTEEEEEESSSCCEEEEEECS---CGGGTCBCCSCCEEEECTTTCCEEEEE-CCBCGGGCCBCEEEEECTTTCCEEE
T ss_pred ---CCEEEEEECCCCCEEeeecCC---CCCcCcccccCCEEeCCCcCCcEEEEE-eccccccCCCCEEEEEECCCCCEEe
Confidence 1369999998875 876431 1110 01112233455 5554 3321111124679999998765 8
Q ss_pred Eec
Q 005043 237 LPL 239 (717)
Q Consensus 237 ~~l 239 (717)
+.-
T Consensus 199 ~~~ 201 (582)
T 1flg_A 199 MRP 201 (582)
T ss_dssp EEE
T ss_pred ecC
Confidence 653
No 183
>3iuj_A Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas punctata} PDB: 3iul_A 3ium_A 3ivm_A* 3iur_A* 3iun_A* 3iuq_A* 3muo_A* 3mun_A*
Probab=94.20 E-value=3.8 Score=47.28 Aligned_cols=210 Identities=9% Similarity=-0.023 Sum_probs=106.7
Q ss_pred CCEEEEEcccCCCCCcccEEEEEcCCCceEEccccccCCCCCCCCCCCcccceEEEEECCEEEEEeccCCC-------CC
Q 005043 98 GNKMIVVGGESGNGLLDDVQVLNFDRFSWTAASSKLYLSPSSLPLKIPACRGHSLISWGKKVLLVGGKTDS-------GS 170 (717)
Q Consensus 98 ~~~lyV~GG~~~~~~~~~v~~yd~~t~~W~~l~~~~~~~~~~~~~~~p~r~~hs~v~~~~~Iyv~GG~~~~-------~~ 170 (717)
+++.++++-........+++++|+.++........ .......+-..++.||+. ..... ..
T Consensus 139 Dg~~lAy~~~~~G~~~~~i~v~dl~tg~~~~~~~~------------~~k~~~~~WsDg~~l~y~-~~~~~~~~~~~~~~ 205 (693)
T 3iuj_A 139 DGRILAYSLSLAGSDWREIHLMDVESKQPLETPLK------------DVKFSGISWLGNEGFFYS-SYDKPDGSELSART 205 (693)
T ss_dssp TSSEEEEEEECSSCCEEEEEEEETTTCSEEEEEEE------------EEESCCCEEETTTEEEEE-ESSCCC-------C
T ss_pred CCCEEEEEEecCCCceEEEEEEECCCCCCCccccC------------CceeccEEEeCCCEEEEE-EecCcccccccccC
Confidence 45555553322222235799999999887654321 011111222323445444 33221 12
Q ss_pred CceEEEEEECCCCcE--EEeeecCCCCC--CceeeEEEE-ECCE-EEEEccccCCCCCcCcEEEEEcCCC--ceEeccCC
Q 005043 171 DRVSVWTFDTETECW--SVVEAKGDIPV--ARSGHTVVR-ASSV-LILFGGEDGKRRKLNDLHMFDLKSL--TWLPLHCT 242 (717)
Q Consensus 171 ~~~~v~~yD~~t~~W--~~l~~~g~~P~--~R~~hs~~~-~~~~-Lyv~GG~~~~~~~~~~v~~yD~~t~--~W~~l~~~ 242 (717)
....||++++.+..= ..+.. .+. +.....+.. -+++ |++...... ..+.+|.+|+.+. .|..+..
T Consensus 206 ~~~~v~~~~lgt~~~~~~~v~~---~~~~~~~~~~~~~~SpDg~~l~~~~~~~~---~~~~i~~~d~~~~~~~~~~l~~- 278 (693)
T 3iuj_A 206 DQHKVYFHRLGTAQEDDRLVFG---AIPAQHHRYVGATVTEDDRFLLISAANST---SGNRLYVKDLSQENAPLLTVQG- 278 (693)
T ss_dssp CCCEEEEEETTSCGGGCEEEES---CSGGGCCSEEEEEECTTSCEEEEEEESSS---SCCEEEEEETTSTTCCCEEEEC-
T ss_pred CCcEEEEEECCCCcccceEEEe---cCCCCCeEEEEEEEcCCCCEEEEEEccCC---CCcEEEEEECCCCCCceEEEeC-
Confidence 344799999877642 12221 121 222222222 2444 444332222 2368999998765 6877741
Q ss_pred CCCCCCCcccEEEEECCcEEEEEcCCCCCCCCCeEEEEECCCC---cEEEeecCCCCCCCCcceEEEEECCEEEEEecCC
Q 005043 243 GTGPSPRSNHVAALYDDKNLLIFGGSSKSKTLNDLYSLDFETM---IWTRIKIRGFHPSPRAGCCGVLCGTKWYIAGGGS 319 (717)
Q Consensus 243 g~~P~~R~~~aa~~~~~~~lyV~GG~~~~~~~ndv~~yd~~t~---~W~~v~~~g~~P~~R~~~sav~~~~~IyV~GG~~ 319 (717)
+.. .....+..+++.||+....+. ....|+.+|+.+. .|+.+.... + ... +....++.|++..-.+
T Consensus 279 ---~~~-~~~~~~~~~g~~l~~~t~~~~--~~~~l~~~d~~~~~~~~~~~l~~~~--~--~~~-~~s~~g~~lv~~~~~~ 347 (693)
T 3iuj_A 279 ---DLD-ADVSLVDNKGSTLYLLTNRDA--PNRRLVTVDAANPGPAHWRDLIPER--Q--QVL-TVHSGSGYLFAEYMVD 347 (693)
T ss_dssp ---SSS-SCEEEEEEETTEEEEEECTTC--TTCEEEEEETTSCCGGGCEEEECCC--S--SCE-EEEEETTEEEEEEEET
T ss_pred ---CCC-ceEEEEeccCCEEEEEECCCC--CCCEEEEEeCCCCCccccEEEecCC--C--CEE-EEEEECCEEEEEEEEC
Confidence 111 112223344555888765432 3457999998763 488876431 1 112 4444567776655433
Q ss_pred CCCccCeEEEEECCCCcEEEee
Q 005043 320 RKKRHAETLIFDILKGEWSVAI 341 (717)
Q Consensus 320 ~~~~~~dv~~yD~~t~~W~~l~ 341 (717)
+ ...++++|+.+.....+.
T Consensus 348 g---~~~l~~~d~~g~~~~~l~ 366 (693)
T 3iuj_A 348 A---TARVEQFDYEGKRVREVA 366 (693)
T ss_dssp T---EEEEEEECTTSCEEEEEC
T ss_pred C---eeEEEEEECCCCeeEEee
Confidence 2 246889999876655553
No 184
>2bkl_A Prolyl endopeptidase; mechanistic study, celiac sprue, hydrolase, protease; HET: ZAH MES; 1.5A {Myxococcus xanthus}
Probab=94.17 E-value=1.3 Score=51.16 Aligned_cols=257 Identities=12% Similarity=0.059 Sum_probs=129.7
Q ss_pred ECCEEEEEcccCCCCCcccEEEEEcCCCceEEccccccCCCCCCCCCCCcccceEEEE--ECCEEEEEeccCCCCCCceE
Q 005043 97 IGNKMIVVGGESGNGLLDDVQVLNFDRFSWTAASSKLYLSPSSLPLKIPACRGHSLIS--WGKKVLLVGGKTDSGSDRVS 174 (717)
Q Consensus 97 ~~~~lyV~GG~~~~~~~~~v~~yd~~t~~W~~l~~~~~~~~~~~~~~~p~r~~hs~v~--~~~~Iyv~GG~~~~~~~~~~ 174 (717)
.++++|.+--.. ......+|+.+.....|..+........ .......... -+++.++|.-.. .+.....
T Consensus 78 dG~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~l~d~~~~a~-------~~~~~~~~~~~SPDG~~la~~~~~-~G~~~~~ 148 (695)
T 2bkl_A 78 RNGRFFYVRTHK-DKEKAILYWRQGESGQEKVLLDPNGWSK-------DGTVSLGTWAVSWDGKKVAFAQKP-NAADEAV 148 (695)
T ss_dssp ETTEEEEEEECT-TCSSCEEEEEESTTSCCEEEECGGGSSS-------SSCEEEEEEEECTTSSEEEEEEEE-TTCSCCE
T ss_pred ECCEEEEEEEcC-CCeEEEEEEEcCCCCCcEEEEchHHhcc-------CCCEEEEEEEECCCCCEEEEEECC-CCCceEE
Confidence 466666553222 2234578999888888887754211000 0001112222 256655554432 2233457
Q ss_pred EEEEECCCCcEEEeeecCCCCCCceeeEEEEE-CCEEEEEccccCCC-------CCcCcEEEEEcCCCceE--eccCCCC
Q 005043 175 VWTFDTETECWSVVEAKGDIPVARSGHTVVRA-SSVLILFGGEDGKR-------RKLNDLHMFDLKSLTWL--PLHCTGT 244 (717)
Q Consensus 175 v~~yD~~t~~W~~l~~~g~~P~~R~~hs~~~~-~~~Lyv~GG~~~~~-------~~~~~v~~yD~~t~~W~--~l~~~g~ 244 (717)
++++|+.++...... ..+.... ...+.. +++.++++..+..+ .....++++++.+..-. .+. .
T Consensus 149 i~v~dl~tg~~~~~~---~~~~~~~-~~~~wspDg~~l~~~~~d~~~~~~~~~~~~~~~v~~~~l~t~~~~~~lv~---~ 221 (695)
T 2bkl_A 149 LHVIDVDSGEWSKVD---VIEGGKY-ATPKWTPDSKGFYYEWLPTDPSIKVDERPGYTTIRYHTLGTEPSKDTVVH---E 221 (695)
T ss_dssp EEEEETTTCCBCSSC---CBSCCTT-CCCEECTTSSEEEEEECCCCTTSCGGGGGGGCEEEEEETTSCGGGCEEEE---C
T ss_pred EEEEECCCCCCcCCc---ccCcccc-cceEEecCCCEEEEEEecCCCCCccccCCCCCEEEEEECCCCchhceEEE---e
Confidence 999999998764111 1222221 223333 56666666554321 13456999999877632 221 1
Q ss_pred CC-CCCcccEEEEE-CCcEEEEEcCCCCCCCCCeEEEEECCCCcEEEeecCCCCCCCCcceEEEEECCEEEEEecCCCCC
Q 005043 245 GP-SPRSNHVAALY-DDKNLLIFGGSSKSKTLNDLYSLDFETMIWTRIKIRGFHPSPRAGCCGVLCGTKWYIAGGGSRKK 322 (717)
Q Consensus 245 ~P-~~R~~~aa~~~-~~~~lyV~GG~~~~~~~ndv~~yd~~t~~W~~v~~~g~~P~~R~~~sav~~~~~IyV~GG~~~~~ 322 (717)
.+ .+......... +++.|++...... ..+++|.+|..+..|..+... ... ....+..++.+|+....+ .
T Consensus 222 ~~~~~~~~~~~~~SpDG~~l~~~~~~~~--~~~~l~~~~~~~~~~~~l~~~----~~~-~~~~~~~~g~l~~~s~~~--~ 292 (695)
T 2bkl_A 222 RTGDPTTFLQSDLSRDGKYLFVYILRGW--SENDVYWKRPGEKDFRLLVKG----VGA-KYEVHAWKDRFYVLTDEG--A 292 (695)
T ss_dssp CCCCTTCEEEEEECTTSCCEEEEEEETT--TEEEEEEECTTCSSCEEEEEC----SSC-CEEEEEETTEEEEEECTT--C
T ss_pred cCCCCEEEEEEEECCCCCEEEEEEeCCC--CceEEEEEcCCCCceEEeecC----CCc-eEEEEecCCcEEEEECCC--C
Confidence 11 12223333333 3443443332221 345788888877888888653 111 122233466666654432 2
Q ss_pred ccCeEEEEECCCCc---EEEeecCCCCCCCCCcceEEEEEEeCCCcEEEEEcCCCCCCCCeEEEEEccC
Q 005043 323 RHAETLIFDILKGE---WSVAITSPSSSVTSNKGFTLVLVQHKEKDFLVAFGGIKKEPSNQVEVLSIEK 388 (717)
Q Consensus 323 ~~~dv~~yD~~t~~---W~~l~~~p~~~~~~r~g~s~v~v~~~~~~~I~v~GG~~~~~~n~v~vyd~~~ 388 (717)
....++.+|+.+.. |+.+... . .......+.+. ++.|++.+..++. ..++++++..
T Consensus 293 ~~~~l~~~d~~~~~~~~~~~l~~~--~---~~~~l~~~~~~---~~~lv~~~~~dg~--~~l~~~~~~g 351 (695)
T 2bkl_A 293 PRQRVFEVDPAKPARASWKEIVPE--D---SSASLLSVSIV---GGHLSLEYLKDAT--SEVRVATLKG 351 (695)
T ss_dssp TTCEEEEEBTTBCSGGGCEEEECC--C---SSCEEEEEEEE---TTEEEEEEEETTE--EEEEEEETTC
T ss_pred CCCEEEEEeCCCCCccCCeEEecC--C---CCCeEEEEEEE---CCEEEEEEEECCE--EEEEEEeCCC
Confidence 23679999987754 8887521 1 11111222232 5667766654433 4788888653
No 185
>3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli}
Probab=94.14 E-value=3.5 Score=47.28 Aligned_cols=192 Identities=11% Similarity=0.066 Sum_probs=93.8
Q ss_pred CCEEEEEcccCCCCCcccEEEEEcCCCceEEccccccCCCCCCCCCCCcccceEEEEE-CCEEEEEeccCCCCCCceEEE
Q 005043 98 GNKMIVVGGESGNGLLDDVQVLNFDRFSWTAASSKLYLSPSSLPLKIPACRGHSLISW-GKKVLLVGGKTDSGSDRVSVW 176 (717)
Q Consensus 98 ~~~lyV~GG~~~~~~~~~v~~yd~~t~~W~~l~~~~~~~~~~~~~~~p~r~~hs~v~~-~~~Iyv~GG~~~~~~~~~~v~ 176 (717)
++.+++.|+.++ .+.+||+.+..-...-. .....-.+++.. ++..++.|+.+. .+.
T Consensus 441 ~g~~l~sgs~Dg-----~v~vwd~~~~~~~~~~~------------~h~~~v~~~~~s~~~~~l~s~s~D~------~i~ 497 (694)
T 3dm0_A 441 DGQFALSGSWDG-----ELRLWDLAAGVSTRRFV------------GHTKDVLSVAFSLDNRQIVSASRDR------TIK 497 (694)
T ss_dssp TSSEEEEEETTS-----EEEEEETTTTEEEEEEE------------CCSSCEEEEEECTTSSCEEEEETTS------CEE
T ss_pred CCCEEEEEeCCC-----cEEEEECCCCcceeEEe------------CCCCCEEEEEEeCCCCEEEEEeCCC------EEE
Confidence 566777777653 58899988764322111 001111222222 566677777542 477
Q ss_pred EEECCCCcEEEeeecCCCCCCceeeEEEEECC---EEEEEccccCCCCCcCcEEEEEcCCCceEeccCCCCCCCCCcccE
Q 005043 177 TFDTETECWSVVEAKGDIPVARSGHTVVRASS---VLILFGGEDGKRRKLNDLHMFDLKSLTWLPLHCTGTGPSPRSNHV 253 (717)
Q Consensus 177 ~yD~~t~~W~~l~~~g~~P~~R~~hs~~~~~~---~Lyv~GG~~~~~~~~~~v~~yD~~t~~W~~l~~~g~~P~~R~~~a 253 (717)
+||.....-..+.... ......-.+++...+ .+++.|+.++ .+.+||+.+..-...- .. ....-.+
T Consensus 498 iwd~~~~~~~~~~~~~-~~h~~~v~~~~~~~~~~~~~l~s~s~d~------~v~vwd~~~~~~~~~~---~~-h~~~v~~ 566 (694)
T 3dm0_A 498 LWNTLGECKYTISEGG-EGHRDWVSCVRFSPNTLQPTIVSASWDK------TVKVWNLSNCKLRSTL---AG-HTGYVST 566 (694)
T ss_dssp EECTTSCEEEEECSST-TSCSSCEEEEEECSCSSSCEEEEEETTS------CEEEEETTTCCEEEEE---CC-CSSCEEE
T ss_pred EEECCCCcceeeccCC-CCCCCcEEEEEEeCCCCcceEEEEeCCC------eEEEEECCCCcEEEEE---cC-CCCCEEE
Confidence 7887654322222110 111111222333222 4566666543 4888998776543221 11 1111223
Q ss_pred EEEECCcEEEEEcCCCCCCCCCeEEEEECCCCcEEEeecCCCCCCCCcceEEEEECCEEEEEecCCCCCccCeEEEEECC
Q 005043 254 AALYDDKNLLIFGGSSKSKTLNDLYSLDFETMIWTRIKIRGFHPSPRAGCCGVLCGTKWYIAGGGSRKKRHAETLIFDIL 333 (717)
Q Consensus 254 a~~~~~~~lyV~GG~~~~~~~ndv~~yd~~t~~W~~v~~~g~~P~~R~~~sav~~~~~IyV~GG~~~~~~~~dv~~yD~~ 333 (717)
++...+..+++.||.++ .|.+||+.+..-.. .. .......+++...+..+++++.+ ..+.+||+.
T Consensus 567 v~~spdg~~l~sg~~Dg-----~i~iwd~~~~~~~~--~~---~~~~~v~~~~~sp~~~~l~~~~~-----~~i~iwd~~ 631 (694)
T 3dm0_A 567 VAVSPDGSLCASGGKDG-----VVLLWDLAEGKKLY--SL---EANSVIHALCFSPNRYWLCAATE-----HGIKIWDLE 631 (694)
T ss_dssp EEECTTSSEEEEEETTS-----BCEEEETTTTEEEE--CC---BCSSCEEEEEECSSSSEEEEEET-----TEEEEEETT
T ss_pred EEEeCCCCEEEEEeCCC-----eEEEEECCCCceEE--Ee---cCCCcEEEEEEcCCCcEEEEEcC-----CCEEEEECC
Confidence 33444443777777654 48899988765322 21 11122333333333344444433 248899998
Q ss_pred CCcEE
Q 005043 334 KGEWS 338 (717)
Q Consensus 334 t~~W~ 338 (717)
+..-.
T Consensus 632 ~~~~~ 636 (694)
T 3dm0_A 632 SKSIV 636 (694)
T ss_dssp TTEEE
T ss_pred CCCCh
Confidence 76543
No 186
>3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R*
Probab=94.09 E-value=5.8 Score=40.37 Aligned_cols=230 Identities=9% Similarity=0.031 Sum_probs=106.7
Q ss_pred CCEEEEEcccCCCCCcccEEEEEcCCCceE-EccccccCCCCCCCCCCCcccceEEEEE-CCEEEEEeccCCCCCCceEE
Q 005043 98 GNKMIVVGGESGNGLLDDVQVLNFDRFSWT-AASSKLYLSPSSLPLKIPACRGHSLISW-GKKVLLVGGKTDSGSDRVSV 175 (717)
Q Consensus 98 ~~~lyV~GG~~~~~~~~~v~~yd~~t~~W~-~l~~~~~~~~~~~~~~~p~r~~hs~v~~-~~~Iyv~GG~~~~~~~~~~v 175 (717)
++..++.|+.++ .+.+||+.++.-. .+.. . ...-.++... ++.+++.|+.+. .+
T Consensus 76 dg~~l~s~s~D~-----~v~~wd~~~~~~~~~~~~------------h-~~~v~~~~~~~~~~~l~s~s~D~------~i 131 (319)
T 3frx_A 76 DGAYALSASWDK-----TLRLWDVATGETYQRFVG------------H-KSDVMSVDIDKKASMIISGSRDK------TI 131 (319)
T ss_dssp TSSEEEEEETTS-----EEEEEETTTTEEEEEEEC------------C-SSCEEEEEECTTSCEEEEEETTS------CE
T ss_pred CCCEEEEEeCCC-----EEEEEECCCCCeeEEEcc------------C-CCcEEEEEEcCCCCEEEEEeCCC------eE
Confidence 455666776553 5889999886432 2211 0 0111222222 466777777642 47
Q ss_pred EEEECCCCcEEEeeecCCCCCCceeeEEEEE-------CCEEEEEccccCCCCCcCcEEEEEcCCCceEeccCCCCCCCC
Q 005043 176 WTFDTETECWSVVEAKGDIPVARSGHTVVRA-------SSVLILFGGEDGKRRKLNDLHMFDLKSLTWLPLHCTGTGPSP 248 (717)
Q Consensus 176 ~~yD~~t~~W~~l~~~g~~P~~R~~hs~~~~-------~~~Lyv~GG~~~~~~~~~~v~~yD~~t~~W~~l~~~g~~P~~ 248 (717)
.+||+....-..+.. ....-.++... ++.+++.||.++ .+..||+.+.+-...- .+ ..
T Consensus 132 ~vwd~~~~~~~~~~~-----h~~~v~~~~~~~~~~~~~~~~~l~s~~~d~------~i~~wd~~~~~~~~~~-~~---h~ 196 (319)
T 3frx_A 132 KVWTIKGQCLATLLG-----HNDWVSQVRVVPNEKADDDSVTIISAGNDK------MVKAWNLNQFQIEADF-IG---HN 196 (319)
T ss_dssp EEEETTSCEEEEECC-----CSSCEEEEEECCC------CCEEEEEETTS------CEEEEETTTTEEEEEE-CC---CC
T ss_pred EEEECCCCeEEEEec-----cCCcEEEEEEccCCCCCCCccEEEEEeCCC------EEEEEECCcchhheee-cC---CC
Confidence 778887654433321 11111122221 233566666543 4788888765433211 01 11
Q ss_pred CcccEEEEECCcEEEEEcCCCCCCCCCeEEEEECCCCcEEEeecCCCCCCCCcceEEEEE-CCEEEEEecCCCCCccCeE
Q 005043 249 RSNHVAALYDDKNLLIFGGSSKSKTLNDLYSLDFETMIWTRIKIRGFHPSPRAGCCGVLC-GTKWYIAGGGSRKKRHAET 327 (717)
Q Consensus 249 R~~~aa~~~~~~~lyV~GG~~~~~~~ndv~~yd~~t~~W~~v~~~g~~P~~R~~~sav~~-~~~IyV~GG~~~~~~~~dv 327 (717)
..-.+++...+..+++.||.++ .|.+||+.+..-...-.. + ..-.+++.. ++.+++.+.. ..+
T Consensus 197 ~~v~~~~~sp~g~~l~s~~~dg-----~i~iwd~~~~~~~~~~~~---~--~~v~~~~~sp~~~~la~~~~------~~i 260 (319)
T 3frx_A 197 SNINTLTASPDGTLIASAGKDG-----EIMLWNLAAKKAMYTLSA---Q--DEVFSLAFSPNRYWLAAATA------TGI 260 (319)
T ss_dssp SCEEEEEECTTSSEEEEEETTC-----EEEEEETTTTEEEEEEEC---C--SCEEEEEECSSSSEEEEEET------TEE
T ss_pred CcEEEEEEcCCCCEEEEEeCCC-----eEEEEECCCCcEEEEecC---C--CcEEEEEEcCCCCEEEEEcC------CCc
Confidence 1122333444443777777653 589999887653222111 1 112233332 4555544432 236
Q ss_pred EEEECCCCc-EEEeecCC-CCCCCCCcceEEEEEEeCCCcEEEEEcCCCCCCCCeEEEEEccC
Q 005043 328 LIFDILKGE-WSVAITSP-SSSVTSNKGFTLVLVQHKEKDFLVAFGGIKKEPSNQVEVLSIEK 388 (717)
Q Consensus 328 ~~yD~~t~~-W~~l~~~p-~~~~~~r~g~s~v~v~~~~~~~I~v~GG~~~~~~n~v~vyd~~~ 388 (717)
.+|++.... +..+.... ............+.+. .++..++.|+.++ .|.+||+.+
T Consensus 261 ~v~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s--pdg~~l~sg~~Dg----~i~vWd~~t 317 (319)
T 3frx_A 261 KVFSLDPQYLVDDLRPEFAGYSKAAEPHAVSLAWS--ADGQTLFAGYTDN----VIRVWQVMT 317 (319)
T ss_dssp EEEEETTEEEEEEECCCCTTCCGGGCCCEEEEEEC--TTSSEEEEEETTS----CEEEEEEEE
T ss_pred EEEEeCcCeeeeccCccccccccCcCcceeEEEEC--CCCCEEEEeecCc----eEEEEEEee
Confidence 677765543 22221100 0000011112233333 2445667777654 477777654
No 187
>3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae}
Probab=94.08 E-value=6.1 Score=40.54 Aligned_cols=191 Identities=13% Similarity=0.103 Sum_probs=95.2
Q ss_pred CCEEEEEcccCCCCCcccEEEEEcCCCceEE-ccccccCCCCCCCCCCCcccceEEEEECCEEEEEeccCCCCCCceEEE
Q 005043 98 GNKMIVVGGESGNGLLDDVQVLNFDRFSWTA-ASSKLYLSPSSLPLKIPACRGHSLISWGKKVLLVGGKTDSGSDRVSVW 176 (717)
Q Consensus 98 ~~~lyV~GG~~~~~~~~~v~~yd~~t~~W~~-l~~~~~~~~~~~~~~~p~r~~hs~v~~~~~Iyv~GG~~~~~~~~~~v~ 176 (717)
++.+++.||.++ .+.+||+.++.-.. +... .... ....+. ...+..++.|.++-.. ..+.
T Consensus 47 d~~~l~sg~~Dg-----~v~iwd~~~~~~~~~~~~~---~v~~--~~~~~~--~~s~s~D~~i~~w~~~-------~~~~ 107 (343)
T 3lrv_A 47 DKWVCMCRCEDG-----ALHFTQLKDSKTITTITTP---NPRT--GGEHPA--IISRGPCNRLLLLYPG-------NQIT 107 (343)
T ss_dssp EEEEEEEEEETT-----EEEEEEESSSSCEEEEEEE---CCCT--TCCCCS--EEEECSTTEEEEEETT-------TEEE
T ss_pred CCCEEEEECCCC-----cEEEEECCCCcEEEEEecC---Ccee--eeeCCc--eEEecCCCeEEEEEcc-------CceE
Confidence 466778888664 47888887653211 1110 0000 000011 2222234555555322 2466
Q ss_pred EEECCCCc-EEEeeecCCCCCCceeeEEEEE---CCEEEEEccccCCCCCcCcEEEEEcCCCceEeccCCCCCCCCCccc
Q 005043 177 TFDTETEC-WSVVEAKGDIPVARSGHTVVRA---SSVLILFGGEDGKRRKLNDLHMFDLKSLTWLPLHCTGTGPSPRSNH 252 (717)
Q Consensus 177 ~yD~~t~~-W~~l~~~g~~P~~R~~hs~~~~---~~~Lyv~GG~~~~~~~~~~v~~yD~~t~~W~~l~~~g~~P~~R~~~ 252 (717)
.||..+.. ...... +....-.+++.. ++.+++.|+.++ .+.+||+.+..-.... .........
T Consensus 108 ~~~~~~~~~~~~~~~----~~~~~v~~~~~~~~~~~~~l~s~s~dg------~i~~wd~~~~~~~~~~---~~~~~~~i~ 174 (343)
T 3lrv_A 108 ILDSKTNKVLREIEV----DSANEIIYMYGHNEVNTEYFIWADNRG------TIGFQSYEDDSQYIVH---SAKSDVEYS 174 (343)
T ss_dssp EEETTTCCEEEEEEC----CCSSCEEEEECCC---CCEEEEEETTC------CEEEEESSSSCEEEEE---CCCSSCCCC
T ss_pred EeecCCcceeEEeec----CCCCCEEEEEcCCCCCCCEEEEEeCCC------cEEEEECCCCcEEEEE---ecCCCCceE
Confidence 77877766 333321 111111222222 456777777553 4889999877654332 111121233
Q ss_pred EEEEECCcEEEEEcCCCCCCCCCeEEEEECCCCcEE--EeecCCCCCCCCcceEEEEE--CCEEEEEecCCCCCccCeEE
Q 005043 253 VAALYDDKNLLIFGGSSKSKTLNDLYSLDFETMIWT--RIKIRGFHPSPRAGCCGVLC--GTKWYIAGGGSRKKRHAETL 328 (717)
Q Consensus 253 aa~~~~~~~lyV~GG~~~~~~~ndv~~yd~~t~~W~--~v~~~g~~P~~R~~~sav~~--~~~IyV~GG~~~~~~~~dv~ 328 (717)
+++...+..+++.|+.++ .|.+||+.+..-. .+.. .. ......+.+ ++..++.|+ ++ .+.
T Consensus 175 ~~~~~pdg~~lasg~~dg-----~i~iwd~~~~~~~~~~~~~----~h-~~~v~~l~fs~~g~~l~s~~-~~-----~v~ 238 (343)
T 3lrv_A 175 SGVLHKDSLLLALYSPDG-----ILDVYNLSSPDQASSRFPV----DE-EAKIKEVKFADNGYWMVVEC-DQ-----TVV 238 (343)
T ss_dssp EEEECTTSCEEEEECTTS-----CEEEEESSCTTSCCEECCC----CT-TSCEEEEEECTTSSEEEEEE-SS-----BEE
T ss_pred EEEECCCCCEEEEEcCCC-----EEEEEECCCCCCCccEEec----cC-CCCEEEEEEeCCCCEEEEEe-CC-----eEE
Confidence 445555554777787654 4999999876532 2211 01 112222333 566666776 32 588
Q ss_pred EEECCCCc
Q 005043 329 IFDILKGE 336 (717)
Q Consensus 329 ~yD~~t~~ 336 (717)
+||+.+..
T Consensus 239 iwd~~~~~ 246 (343)
T 3lrv_A 239 CFDLRKDV 246 (343)
T ss_dssp EEETTSST
T ss_pred EEEcCCCC
Confidence 99987753
No 188
>1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B*
Probab=94.05 E-value=0.84 Score=46.50 Aligned_cols=159 Identities=16% Similarity=0.123 Sum_probs=79.2
Q ss_pred CCEEEEEeccCCCCCCceEEEEEECCCCcEEEeeecCCCCCCceeeEEEEE-CC-EEEEEccccCCCCCcCcEEEEEcCC
Q 005043 156 GKKVLLVGGKTDSGSDRVSVWTFDTETECWSVVEAKGDIPVARSGHTVVRA-SS-VLILFGGEDGKRRKLNDLHMFDLKS 233 (717)
Q Consensus 156 ~~~Iyv~GG~~~~~~~~~~v~~yD~~t~~W~~l~~~g~~P~~R~~hs~~~~-~~-~Lyv~GG~~~~~~~~~~v~~yD~~t 233 (717)
++.+|+.++.. ..++++|+.+++....-. .+.....+.++.. ++ .+|+.++. ...+++||+.+
T Consensus 10 ~~~~~v~~~~~------~~v~~~d~~~~~~~~~~~---~~~~~~~~~~~~s~dg~~~~v~~~~------~~~i~~~d~~t 74 (349)
T 1jmx_B 10 GHEYMIVTNYP------NNLHVVDVASDTVYKSCV---MPDKFGPGTAMMAPDNRTAYVLNNH------YGDIYGIDLDT 74 (349)
T ss_dssp TCEEEEEEETT------TEEEEEETTTTEEEEEEE---CSSCCSSCEEEECTTSSEEEEEETT------TTEEEEEETTT
T ss_pred CCEEEEEeCCC------CeEEEEECCCCcEEEEEe---cCCCCCCceeEECCCCCEEEEEeCC------CCcEEEEeCCC
Confidence 67788887653 379999999887654322 2221012334433 33 57777532 25699999988
Q ss_pred CceEeccCCCCCCC--CCcccEEEEE-CCcEEEEEcCC---CCC---CCCCeEEEEECCCCcEEEeecCCCCCCCCcceE
Q 005043 234 LTWLPLHCTGTGPS--PRSNHVAALY-DDKNLLIFGGS---SKS---KTLNDLYSLDFETMIWTRIKIRGFHPSPRAGCC 304 (717)
Q Consensus 234 ~~W~~l~~~g~~P~--~R~~~aa~~~-~~~~lyV~GG~---~~~---~~~ndv~~yd~~t~~W~~v~~~g~~P~~R~~~s 304 (717)
.+....-..+..|. ...-+.++.. +++.+|+.+.. ... ...+.+++||+.++.-....... +.++...+
T Consensus 75 ~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~--~~~~~~~~ 152 (349)
T 1jmx_B 75 CKNTFHANLSSVPGEVGRSMYSFAISPDGKEVYATVNPTQRLNDHYVVKPPRLEVFSTADGLEAKPVRTF--PMPRQVYL 152 (349)
T ss_dssp TEEEEEEESCCSTTEEEECSSCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEEGGGGGGBCCSEEE--ECCSSCCC
T ss_pred CcEEEEEEcccccccccccccceEECCCCCEEEEEcccccccccccccCCCeEEEEECCCccccceeeec--cCCCcccc
Confidence 76543221111110 1111233333 45555554421 000 01257999998763321110000 11222223
Q ss_pred EEE-ECCEEEEEecCCCCCccCeEEEEECCCCcEEE
Q 005043 305 GVL-CGTKWYIAGGGSRKKRHAETLIFDILKGEWSV 339 (717)
Q Consensus 305 av~-~~~~IyV~GG~~~~~~~~dv~~yD~~t~~W~~ 339 (717)
++. -++++|+.++ ++++||+.+.+...
T Consensus 153 ~~~s~dg~l~~~~~--------~i~~~d~~~~~~~~ 180 (349)
T 1jmx_B 153 MRAADDGSLYVAGP--------DIYKMDVKTGKYTV 180 (349)
T ss_dssp EEECTTSCEEEESS--------SEEEECTTTCCEEE
T ss_pred eeECCCCcEEEccC--------cEEEEeCCCCceec
Confidence 333 2566777432 38899988776544
No 189
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*
Probab=94.05 E-value=5.1 Score=49.08 Aligned_cols=107 Identities=12% Similarity=0.016 Sum_probs=56.9
Q ss_pred CCEEEEEcccCCCCCcccEEEEEcCCCceEEccccccCCCCCCCCCCCcccceEEEEE-CCEEEEEeccCCCCCCceEEE
Q 005043 98 GNKMIVVGGESGNGLLDDVQVLNFDRFSWTAASSKLYLSPSSLPLKIPACRGHSLISW-GKKVLLVGGKTDSGSDRVSVW 176 (717)
Q Consensus 98 ~~~lyV~GG~~~~~~~~~v~~yd~~t~~W~~l~~~~~~~~~~~~~~~p~r~~hs~v~~-~~~Iyv~GG~~~~~~~~~~v~ 176 (717)
++++++.||.++ .+.+||..+..-...-. .....-.+++.. ++.+++.||.+ ..+.
T Consensus 626 ~~~~l~s~~~d~-----~i~vw~~~~~~~~~~~~------------~h~~~v~~~~~s~~~~~l~s~~~d------~~v~ 682 (1249)
T 3sfz_A 626 DGQRIASCGADK-----TLQVFKAETGEKLLDIK------------AHEDEVLCCAFSSDDSYIATCSAD------KKVK 682 (1249)
T ss_dssp TSSEEEEEETTS-----CEEEEETTTCCEEEEEC------------CCSSCEEEEEECTTSSEEEEEETT------SEEE
T ss_pred CCCEEEEEeCCC-----eEEEEECCCCCEEEEec------------cCCCCEEEEEEecCCCEEEEEeCC------CeEE
Confidence 566777777553 58999998865322211 001111222222 56677777753 2689
Q ss_pred EEECCCCcEEEeeecCCCCCCceeeEEEEE---CCEEEEEccccCCCCCcCcEEEEEcCCCceE
Q 005043 177 TFDTETECWSVVEAKGDIPVARSGHTVVRA---SSVLILFGGEDGKRRKLNDLHMFDLKSLTWL 237 (717)
Q Consensus 177 ~yD~~t~~W~~l~~~g~~P~~R~~hs~~~~---~~~Lyv~GG~~~~~~~~~~v~~yD~~t~~W~ 237 (717)
+||+.+++....-. .....-.+++.. ++.+++.|+.+ ..+.+||+.+....
T Consensus 683 vwd~~~~~~~~~~~----~~~~~v~~~~~~~~~~~~~l~sg~~d------~~v~vwd~~~~~~~ 736 (1249)
T 3sfz_A 683 IWDSATGKLVHTYD----EHSEQVNCCHFTNKSNHLLLATGSND------FFLKLWDLNQKECR 736 (1249)
T ss_dssp EEETTTCCEEEEEE----CCSSCEEEEEECSSSSCCEEEEEETT------SCEEEEETTSSSEE
T ss_pred EEECCCCceEEEEc----CCCCcEEEEEEecCCCceEEEEEeCC------CeEEEEECCCcchh
Confidence 99998876543321 111111223332 23455566543 34888998877643
No 190
>2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae}
Probab=94.04 E-value=6.1 Score=40.44 Aligned_cols=242 Identities=10% Similarity=0.051 Sum_probs=112.0
Q ss_pred ECCEEEEEcccCCCCCcccEEEEEcCCCceEEccccccCCCCCCCCCCCcccceEEEEE-CCEEEEEeccCCCCCCceEE
Q 005043 97 IGNKMIVVGGESGNGLLDDVQVLNFDRFSWTAASSKLYLSPSSLPLKIPACRGHSLISW-GKKVLLVGGKTDSGSDRVSV 175 (717)
Q Consensus 97 ~~~~lyV~GG~~~~~~~~~v~~yd~~t~~W~~l~~~~~~~~~~~~~~~p~r~~hs~v~~-~~~Iyv~GG~~~~~~~~~~v 175 (717)
..+ +++.||.++ .+.+||+.++.+..+.... .......-.+++.. ++.+++.|+.+. .+
T Consensus 23 s~~-~las~~~D~-----~i~lw~~~~~~~~~~~~~~--------~~~h~~~v~~v~~sp~~~~las~s~D~------~v 82 (330)
T 2hes_X 23 SQG-ILATGSTDR-----KIKLVSVKYDDFTLIDVLD--------ETAHKKAIRSVAWRPHTSLLAAGSFDS------TV 82 (330)
T ss_dssp ETT-EEEEEESSS-----CEEEEECSSSCCEEEEEEC--------TTCCCSCEEEEEECTTSSEEEEEETTS------CE
T ss_pred CCC-EEEEEcCCC-----EEEEEEecCCCeEEEEEEe--------cCCccCCEEEEEECCCCCEEEEEeCCC------cE
Confidence 344 666666553 4788888876554433210 00011111222222 566777777642 46
Q ss_pred EEEECCCC-----cEEEeeecCCCC-CCceeeEEEEE-CCEEEEEccccCCCCCcCcEEEEEcCC--CceEeccCCCCCC
Q 005043 176 WTFDTETE-----CWSVVEAKGDIP-VARSGHTVVRA-SSVLILFGGEDGKRRKLNDLHMFDLKS--LTWLPLHCTGTGP 246 (717)
Q Consensus 176 ~~yD~~t~-----~W~~l~~~g~~P-~~R~~hs~~~~-~~~Lyv~GG~~~~~~~~~~v~~yD~~t--~~W~~l~~~g~~P 246 (717)
.+||.... .+..+.. +. ....-.+++.. ++.+++.|+.++ .+.+||+.. ..+..+.....
T Consensus 83 ~iw~~~~~~~~~~~~~~~~~---~~~h~~~V~~v~~sp~g~~las~s~D~------~v~iwd~~~~~~~~~~~~~~~~-- 151 (330)
T 2hes_X 83 SIWAKEESADRTFEMDLLAI---IEGHENEVKGVAWSNDGYYLATCSRDK------SVWIWETDESGEEYECISVLQE-- 151 (330)
T ss_dssp EEEEC-------CCCEEEEE---EC----CEEEEEECTTSCEEEEEETTS------CEEEEECCTTCCCCEEEEEECC--
T ss_pred EEEEcccCcCccccceeEEE---EcCCCCcEEEEEECCCCCEEEEEeCCC------EEEEEeccCCCCCeEEEEEecc--
Confidence 77776432 2222221 11 01111122222 467777777553 377888742 23443321101
Q ss_pred CCCcccEEEEECCcEEEEEcCCCCCCCCCeEEEEECCCCcEEEeecCCCCCCCCcceEEEEE-C--CEEEEEecCCCCCc
Q 005043 247 SPRSNHVAALYDDKNLLIFGGSSKSKTLNDLYSLDFETMIWTRIKIRGFHPSPRAGCCGVLC-G--TKWYIAGGGSRKKR 323 (717)
Q Consensus 247 ~~R~~~aa~~~~~~~lyV~GG~~~~~~~ndv~~yd~~t~~W~~v~~~g~~P~~R~~~sav~~-~--~~IyV~GG~~~~~~ 323 (717)
....-.++....+..+++.|+.++ .|..||..+..|..+..... ....-.++... + +..++.|+.++.
T Consensus 152 h~~~v~~v~~~p~~~~l~s~s~D~-----~i~iW~~~~~~~~~~~~~~~--h~~~v~~~~~~~~~~~~~l~s~s~D~~-- 222 (330)
T 2hes_X 152 HSQDVKHVIWHPSEALLASSSYDD-----TVRIWKDYDDDWECVAVLNG--HEGTVWSSDFDKTEGVFRLCSGSDDST-- 222 (330)
T ss_dssp CSSCEEEEEECSSSSEEEEEETTS-----CEEEEEEETTEEEEEEEECC--CSSCEEEEEECCSSSSCEEEEEETTSC--
T ss_pred CCCceEEEEECCCCCEEEEEcCCC-----eEEEEECCCCCeeEEEEccC--CCCcEEEEEecCCCCeeEEEEEeCCCe--
Confidence 111112233333333777787654 48888887777776654311 11111222222 2 456667776543
Q ss_pred cCeEEEEECCC------CcEEEeecCCCCCCCCCcceEEEEEEeCCCcEEEEEcCCCCCCCCeEEEEEccCCcc
Q 005043 324 HAETLIFDILK------GEWSVAITSPSSSVTSNKGFTLVLVQHKEKDFLVAFGGIKKEPSNQVEVLSIEKNES 391 (717)
Q Consensus 324 ~~dv~~yD~~t------~~W~~l~~~p~~~~~~r~g~s~v~v~~~~~~~I~v~GG~~~~~~n~v~vyd~~~~eW 391 (717)
+.+||+.+ ..|..+...+.. .......+.+. .++ +++.||.++ .|.+||..+.+|
T Consensus 223 ---v~iw~~~~~~~~~~~~~~~~~~~~~~---h~~~v~~v~~s--~~~-~l~s~~~dg----~v~iw~~~~~~~ 283 (330)
T 2hes_X 223 ---VRVWKYMGDDEDDQQEWVCEAILPDV---HKRQVYNVAWG--FNG-LIASVGADG----VLAVYEEVDGEW 283 (330)
T ss_dssp ---EEEEEEEEECTTSCEEEEEEEECCSC---CSSCEEEEEEC--TTS-CEEEEETTS----CEEEEEEETTEE
T ss_pred ---EEEEEecCCCccccceeEEeeecccc---cccceEEEEEc--CCC-EEEEEeCCC----EEEEEEcCCCce
Confidence 66666543 245554432211 11122233333 233 566677543 577888776655
No 191
>3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A
Probab=94.03 E-value=1.1 Score=46.02 Aligned_cols=112 Identities=11% Similarity=0.125 Sum_probs=57.7
Q ss_pred CCEEEEEcccCCCCCcccEEEEEcCCCceEEccccccCCCCCCCCCCCcccceEEEEE---CCEEEEEeccCCCCCCceE
Q 005043 98 GNKMIVVGGESGNGLLDDVQVLNFDRFSWTAASSKLYLSPSSLPLKIPACRGHSLISW---GKKVLLVGGKTDSGSDRVS 174 (717)
Q Consensus 98 ~~~lyV~GG~~~~~~~~~v~~yd~~t~~W~~l~~~~~~~~~~~~~~~p~r~~hs~v~~---~~~Iyv~GG~~~~~~~~~~ 174 (717)
++++++.|+.++ .+.+||+.+.....+... ......-.+++.. ++.+++.|+.+. .
T Consensus 24 ~g~~lasgs~D~-----~v~lwd~~~~~~~~~~~l----------~gH~~~V~~v~~~~~~~~~~l~s~s~D~------~ 82 (316)
T 3bg1_A 24 YGTRLATCSSDR-----SVKIFDVRNGGQILIADL----------RGHEGPVWQVAWAHPMYGNILASCSYDR------K 82 (316)
T ss_dssp GGCEEEEEETTT-----EEEEEEEETTEEEEEEEE----------ECCSSCEEEEEECCGGGSSCEEEEETTS------C
T ss_pred CCCEEEEEeCCC-----eEEEEEecCCCcEEEEEE----------cCCCccEEEEEeCCCCCCCEEEEEECCC------E
Confidence 456667776543 578888877654333221 0001111223322 256777777642 4
Q ss_pred EEEEECCCCcEEEeeecCCCCCCceeeEEEEE-C--CEEEEEccccCCCCCcCcEEEEEcCCC-ceEe
Q 005043 175 VWTFDTETECWSVVEAKGDIPVARSGHTVVRA-S--SVLILFGGEDGKRRKLNDLHMFDLKSL-TWLP 238 (717)
Q Consensus 175 v~~yD~~t~~W~~l~~~g~~P~~R~~hs~~~~-~--~~Lyv~GG~~~~~~~~~~v~~yD~~t~-~W~~ 238 (717)
+.+||+.+..|..+..... ....-.+++.. + +.+++.|+.++ .+.+||..+. .|..
T Consensus 83 v~iWd~~~~~~~~~~~~~~--h~~~V~~v~~~p~~~g~~lasgs~D~------~i~lwd~~~~~~~~~ 142 (316)
T 3bg1_A 83 VIIWREENGTWEKSHEHAG--HDSSVNSVCWAPHDYGLILACGSSDG------AISLLTYTGEGQWEV 142 (316)
T ss_dssp EEEECCSSSCCCEEEEECC--CSSCCCEEEECCTTTCSCEEEECSSS------CEEEEEECSSSCEEE
T ss_pred EEEEECCCCcceEEEEccC--CCCceEEEEECCCCCCcEEEEEcCCC------CEEEEecCCCCCcce
Confidence 8888998877754432111 11111233332 2 56777776543 3677777654 4653
No 192
>3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae}
Probab=94.00 E-value=3.2 Score=42.74 Aligned_cols=191 Identities=9% Similarity=0.010 Sum_probs=95.6
Q ss_pred CCEEEEEeccCCCCCCceEEEEEECCCCcEE-EeeecCCCCCCcee--eEEEEECCEEEEEccccCCCCCcCcEEEEEcC
Q 005043 156 GKKVLLVGGKTDSGSDRVSVWTFDTETECWS-VVEAKGDIPVARSG--HTVVRASSVLILFGGEDGKRRKLNDLHMFDLK 232 (717)
Q Consensus 156 ~~~Iyv~GG~~~~~~~~~~v~~yD~~t~~W~-~l~~~g~~P~~R~~--hs~~~~~~~Lyv~GG~~~~~~~~~~v~~yD~~ 232 (717)
++.+++.||.+. .+.+||+.+++-. .+.. +....-... ...+..++.+.++- ....+..||..
T Consensus 47 d~~~l~sg~~Dg------~v~iwd~~~~~~~~~~~~-~~v~~~~~~~~~~s~s~D~~i~~w~-------~~~~~~~~~~~ 112 (343)
T 3lrv_A 47 DKWVCMCRCEDG------ALHFTQLKDSKTITTITT-PNPRTGGEHPAIISRGPCNRLLLLY-------PGNQITILDSK 112 (343)
T ss_dssp EEEEEEEEEETT------EEEEEEESSSSCEEEEEE-ECCCTTCCCCSEEEECSTTEEEEEE-------TTTEEEEEETT
T ss_pred CCCEEEEECCCC------cEEEEECCCCcEEEEEec-CCceeeeeCCceEEecCCCeEEEEE-------ccCceEEeecC
Confidence 566778888643 5788887765422 1111 011000000 11122244555542 12356677877
Q ss_pred CCc-eEeccCCCCCCCCCcccEEEEEC--CcEEEEEcCCCCCCCCCeEEEEECCCCcEEEeecCCCCCCCCcceEEEE-E
Q 005043 233 SLT-WLPLHCTGTGPSPRSNHVAALYD--DKNLLIFGGSSKSKTLNDLYSLDFETMIWTRIKIRGFHPSPRAGCCGVL-C 308 (717)
Q Consensus 233 t~~-W~~l~~~g~~P~~R~~~aa~~~~--~~~lyV~GG~~~~~~~ndv~~yd~~t~~W~~v~~~g~~P~~R~~~sav~-~ 308 (717)
+.. ..... .+....-.+++... +..+++.|+.++ .+..||+.+..-..+... .......+++. -
T Consensus 113 ~~~~~~~~~----~~~~~~v~~~~~~~~~~~~~l~s~s~dg-----~i~~wd~~~~~~~~~~~~---~~~~~i~~~~~~p 180 (343)
T 3lrv_A 113 TNKVLREIE----VDSANEIIYMYGHNEVNTEYFIWADNRG-----TIGFQSYEDDSQYIVHSA---KSDVEYSSGVLHK 180 (343)
T ss_dssp TCCEEEEEE----CCCSSCEEEEECCC---CCEEEEEETTC-----CEEEEESSSSCEEEEECC---CSSCCCCEEEECT
T ss_pred CcceeEEee----cCCCCCEEEEEcCCCCCCCEEEEEeCCC-----cEEEEECCCCcEEEEEec---CCCCceEEEEECC
Confidence 765 22222 11111112223333 333677777654 489999988776544322 11111223333 2
Q ss_pred CCEEEEEecCCCCCccCeEEEEECCCCcEE--EeecCCCCCCCCCcceEEEEEEeCCCcEEEEEcCCCCCCCCeEEEEEc
Q 005043 309 GTKWYIAGGGSRKKRHAETLIFDILKGEWS--VAITSPSSSVTSNKGFTLVLVQHKEKDFLVAFGGIKKEPSNQVEVLSI 386 (717)
Q Consensus 309 ~~~IyV~GG~~~~~~~~dv~~yD~~t~~W~--~l~~~p~~~~~~r~g~s~v~v~~~~~~~I~v~GG~~~~~~n~v~vyd~ 386 (717)
++.+++.|+.++. +.+||+.+..-. .+. .. -......+.+. .++..++.|+. + .|.+||+
T Consensus 181 dg~~lasg~~dg~-----i~iwd~~~~~~~~~~~~---~~---h~~~v~~l~fs--~~g~~l~s~~~-~----~v~iwd~ 242 (343)
T 3lrv_A 181 DSLLLALYSPDGI-----LDVYNLSSPDQASSRFP---VD---EEAKIKEVKFA--DNGYWMVVECD-Q----TVVCFDL 242 (343)
T ss_dssp TSCEEEEECTTSC-----EEEEESSCTTSCCEECC---CC---TTSCEEEEEEC--TTSSEEEEEES-S----BEEEEET
T ss_pred CCCEEEEEcCCCE-----EEEEECCCCCCCccEEe---cc---CCCCEEEEEEe--CCCCEEEEEeC-C----eEEEEEc
Confidence 6788888886644 899999886533 221 10 11223333343 24445666662 2 7999999
Q ss_pred cCCc
Q 005043 387 EKNE 390 (717)
Q Consensus 387 ~~~e 390 (717)
.+.+
T Consensus 243 ~~~~ 246 (343)
T 3lrv_A 243 RKDV 246 (343)
T ss_dssp TSST
T ss_pred CCCC
Confidence 8765
No 193
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A
Probab=94.00 E-value=0.062 Score=66.64 Aligned_cols=65 Identities=22% Similarity=0.217 Sum_probs=38.5
Q ss_pred HHHHHHHHHhcchhHHHHHHHhhHHHHHhhhhhHHhhHHHHHHHHHHHHHHHHHHHHHHhhhhhh
Q 005043 573 SKMAALIRKNGILEGQLAAALVNREAAEKNFSSVLKSRQEMEKKLADSLKEMELLKEKLAGLELA 637 (717)
Q Consensus 573 ~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 637 (717)
.++..+-++...++.+|.+......++|+.+..+.+.++++++++++..++++.++++++.++.+
T Consensus 885 ~~l~~Le~e~~~l~~~L~~e~~~l~~~e~~l~~l~~~~~~Le~~l~ele~elee~ee~l~el~~e 949 (1184)
T 1i84_S 885 QKHTQLCEEKNLLQEKLQAETELYAEAEEMRVRLAAKKQELEEILHEMEARIEEEEERSQQLQAE 949 (1184)
T ss_dssp HHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444445555555566666666666677777777777788888877777777777766655433
No 194
>1pjx_A Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotriesterase (PTE), nitrogen-calcium coordination, BET propeller; HET: ME2 MES PGE; 0.85A {Loligo vulgaris} SCOP: b.68.6.1 PDB: 1e1a_A* 2gvv_A* 2gvw_A 3byc_A 3kgg_A 3o4p_A* 3li3_A 2gvx_A 2gvu_A 3li4_A 2iaq_A 3li5_A* 2iao_A 2iap_A 2iau_A 2iax_A 2iaw_A 2ias_A 2iat_A 2iar_A ...
Probab=93.97 E-value=2.2 Score=42.88 Aligned_cols=196 Identities=12% Similarity=0.048 Sum_probs=95.9
Q ss_pred CEEEEEcccCCCCCcccEEEEEcCCCceEEc-cccccCCCCCCCCCCCcccceEEEEE-CCEEEEEeccC---------C
Q 005043 99 NKMIVVGGESGNGLLDDVQVLNFDRFSWTAA-SSKLYLSPSSLPLKIPACRGHSLISW-GKKVLLVGGKT---------D 167 (717)
Q Consensus 99 ~~lyV~GG~~~~~~~~~v~~yd~~t~~W~~l-~~~~~~~~~~~~~~~p~r~~hs~v~~-~~~Iyv~GG~~---------~ 167 (717)
+++||.+.. +.+++||+. ++...+ .... ...+...-+.++.. ++.+|+..... .
T Consensus 83 g~l~v~~~~------~~l~~~d~~-g~~~~~~~~~~--------~~~~~~~~~~i~~d~~g~l~v~~~~~~~~~~~~~~~ 147 (314)
T 1pjx_A 83 NQLFVADMR------LGLLVVQTD-GTFEEIAKKDS--------EGRRMQGCNDCAFDYEGNLWITAPAGEVAPADYTRS 147 (314)
T ss_dssp SEEEEEETT------TEEEEEETT-SCEEECCSBCT--------TSCBCBCCCEEEECTTSCEEEEECBCBCTTSCCCBT
T ss_pred CcEEEEECC------CCEEEEeCC-CCEEEEEeccC--------CCccccCCcCEEECCCCCEEEEecCccccccccccc
Confidence 688887642 258999998 776655 3210 00111112334443 57788765432 1
Q ss_pred CCCCceEEEEEECCCCcEEEeeecCCCCCCceeeEEEEE----C-C-EEEEEccccCCCCCcCcEEEEEcC-CCceEecc
Q 005043 168 SGSDRVSVWTFDTETECWSVVEAKGDIPVARSGHTVVRA----S-S-VLILFGGEDGKRRKLNDLHMFDLK-SLTWLPLH 240 (717)
Q Consensus 168 ~~~~~~~v~~yD~~t~~W~~l~~~g~~P~~R~~hs~~~~----~-~-~Lyv~GG~~~~~~~~~~v~~yD~~-t~~W~~l~ 240 (717)
.......+++||+. .+...+... ... ...++.. . + .||+.... .+.+++||+. +.++....
T Consensus 148 ~~~~~~~l~~~~~~-g~~~~~~~~--~~~---~~~i~~~~~~d~dg~~l~v~~~~------~~~i~~~~~~~~g~~~~~~ 215 (314)
T 1pjx_A 148 MQEKFGSIYCFTTD-GQMIQVDTA--FQF---PNGIAVRHMNDGRPYQLIVAETP------TKKLWSYDIKGPAKIENKK 215 (314)
T ss_dssp TSSSCEEEEEECTT-SCEEEEEEE--ESS---EEEEEEEECTTSCEEEEEEEETT------TTEEEEEEEEETTEEEEEE
T ss_pred ccCCCCeEEEECCC-CCEEEeccC--CCC---cceEEEecccCCCCCEEEEEECC------CCeEEEEECCCCCccccce
Confidence 11123579999987 665544321 111 1233443 2 3 57776421 2568899976 44432211
Q ss_pred CCCCCCCC--CcccEEEEECCcEEEEEcCCCCCCCCCeEEEEECCCCcEEEeecCCCCCCCCcceEEEEE-CCE-EEEEe
Q 005043 241 CTGTGPSP--RSNHVAALYDDKNLLIFGGSSKSKTLNDLYSLDFETMIWTRIKIRGFHPSPRAGCCGVLC-GTK-WYIAG 316 (717)
Q Consensus 241 ~~g~~P~~--R~~~aa~~~~~~~lyV~GG~~~~~~~ndv~~yd~~t~~W~~v~~~g~~P~~R~~~sav~~-~~~-IyV~G 316 (717)
....++.. ..-..++...+..+|+....+ +.|.+||+.++.....-.. |. ..-.+++.. +++ ||+.+
T Consensus 216 ~~~~~~~~~~~~p~~i~~d~~G~l~v~~~~~-----~~i~~~d~~~g~~~~~~~~---~~-~~~~~i~~~~dg~~l~v~~ 286 (314)
T 1pjx_A 216 VWGHIPGTHEGGADGMDFDEDNNLLVANWGS-----SHIEVFGPDGGQPKMRIRC---PF-EKPSNLHFKPQTKTIFVTE 286 (314)
T ss_dssp EEEECCCCSSCEEEEEEEBTTCCEEEEEETT-----TEEEEECTTCBSCSEEEEC---SS-SCEEEEEECTTSSEEEEEE
T ss_pred EEEECCCCCCCCCCceEECCCCCEEEEEcCC-----CEEEEEcCCCCcEeEEEeC---CC-CCceeEEECCCCCEEEEEe
Confidence 00011211 111223333334477764221 3699999985443221111 21 222233332 444 77776
Q ss_pred cCCCCCccCeEEEEECCCC
Q 005043 317 GGSRKKRHAETLIFDILKG 335 (717)
Q Consensus 317 G~~~~~~~~dv~~yD~~t~ 335 (717)
... ..+++|++...
T Consensus 287 ~~~-----~~l~~~~~~~~ 300 (314)
T 1pjx_A 287 HEN-----NAVWKFEWQRN 300 (314)
T ss_dssp TTT-----TEEEEEECSSC
T ss_pred CCC-----CeEEEEeCCCC
Confidence 533 36899998764
No 195
>2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B
Probab=93.92 E-value=0.61 Score=50.20 Aligned_cols=146 Identities=13% Similarity=0.143 Sum_probs=70.8
Q ss_pred EEEEeccCCCCCCceEEEEEECCCC---cEEEeeecCCCCCCceeeEEEEE--CCEEEEEccccCCCCCcCcEEEEEcCC
Q 005043 159 VLLVGGKTDSGSDRVSVWTFDTETE---CWSVVEAKGDIPVARSGHTVVRA--SSVLILFGGEDGKRRKLNDLHMFDLKS 233 (717)
Q Consensus 159 Iyv~GG~~~~~~~~~~v~~yD~~t~---~W~~l~~~g~~P~~R~~hs~~~~--~~~Lyv~GG~~~~~~~~~~v~~yD~~t 233 (717)
+++.|+.++ .+.+||+.+. .+...+..........-++++.. ++.+++.|+.+ ..+.+||+.+
T Consensus 196 ~l~s~~~dg------~i~vwd~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~l~s~~~d------g~i~i~d~~~ 263 (430)
T 2xyi_A 196 YLLSASDDH------TICLWDINATPKEHRVIDAKNIFTGHTAVVEDVAWHLLHESLFGSVADD------QKLMIWDTRN 263 (430)
T ss_dssp EEEEECTTS------CEEEEETTSCCBGGGEEECSEEECCCSSCEEEEEECSSCTTEEEEEETT------SEEEEEETTC
T ss_pred eEEEEeCCC------eEEEEeCCCCCCCCceeccceeecCCCCCEeeeEEeCCCCCEEEEEeCC------CeEEEEECCC
Confidence 777776532 4888888762 22211100001112222334433 45677777644 4588999876
Q ss_pred Cc-eEeccCCCCCCCCCcccEEEEEC-CcEEEEEcCCCCCCCCCeEEEEECCCCc--EEEeecCCCCCCCCcceEEEEE-
Q 005043 234 LT-WLPLHCTGTGPSPRSNHVAALYD-DKNLLIFGGSSKSKTLNDLYSLDFETMI--WTRIKIRGFHPSPRAGCCGVLC- 308 (717)
Q Consensus 234 ~~-W~~l~~~g~~P~~R~~~aa~~~~-~~~lyV~GG~~~~~~~ndv~~yd~~t~~--W~~v~~~g~~P~~R~~~sav~~- 308 (717)
.. ...+... . .....-.+++... +..+++.|+.++ .|.+||+.+.. -..+.. .......+.+
T Consensus 264 ~~~~~~~~~~-~-~~~~~v~~i~~~p~~~~~l~tg~~dg-----~v~vwd~~~~~~~~~~~~~------h~~~v~~i~~s 330 (430)
T 2xyi_A 264 NNTSKPSHTV-D-AHTAEVNCLSFNPYSEFILATGSADK-----TVALWDLRNLKLKLHSFES------HKDEIFQVQWS 330 (430)
T ss_dssp SCSSSCSEEE-E-CCSSCEEEEEECSSCTTEEEEEETTS-----EEEEEETTCTTSCSEEEEC------CSSCEEEEEEC
T ss_pred CCCCcceeEe-e-cCCCCeEEEEeCCCCCCEEEEEeCCC-----eEEEEeCCCCCCCeEEeec------CCCCEEEEEEC
Confidence 52 1111100 0 1111112233332 334788887654 58999987632 111111 1112222333
Q ss_pred --CCEEEEEecCCCCCccCeEEEEECCC
Q 005043 309 --GTKWYIAGGGSRKKRHAETLIFDILK 334 (717)
Q Consensus 309 --~~~IyV~GG~~~~~~~~dv~~yD~~t 334 (717)
+..+++.||.++. +.+||+..
T Consensus 331 p~~~~~l~s~~~d~~-----i~iwd~~~ 353 (430)
T 2xyi_A 331 PHNETILASSGTDRR-----LHVWDLSK 353 (430)
T ss_dssp SSCTTEEEEEETTSC-----CEEEEGGG
T ss_pred CCCCCEEEEEeCCCc-----EEEEeCCC
Confidence 3467888876643 78888866
No 196
>1qks_A Cytochrome CD1 nitrite reductase; enzyme, oxidoreductase, denitrification, electron transport, periplasmic; HET: HEC DHE; 1.28A {Paracoccus pantotrophus} SCOP: a.3.1.2 b.70.2.1 PDB: 1aof_A* 1aoq_A* 1aom_A* 1e2r_A* 1hj5_A* 1h9x_A* 1h9y_A* 1hcm_A* 1hj3_A* 1hj4_A* 1dy7_A* 1gq1_A*
Probab=93.91 E-value=2.9 Score=47.38 Aligned_cols=201 Identities=11% Similarity=-0.011 Sum_probs=107.2
Q ss_pred eEEEEEECCCCcEEEeeecCCCCCCceeeEEEEEC-C-EEEEEccccCCCCCcCcEEEEEcCCCceEeccCC-CCCCCCC
Q 005043 173 VSVWTFDTETECWSVVEAKGDIPVARSGHTVVRAS-S-VLILFGGEDGKRRKLNDLHMFDLKSLTWLPLHCT-GTGPSPR 249 (717)
Q Consensus 173 ~~v~~yD~~t~~W~~l~~~g~~P~~R~~hs~~~~~-~-~Lyv~GG~~~~~~~~~~v~~yD~~t~~W~~l~~~-g~~P~~R 249 (717)
..+++.|..+...-.+.. ++..+.-|...... + ++|+... ..+.+.++|..+++-...-.. +..|.+.
T Consensus 320 g~v~~vd~~~~~~~~v~~---i~~~~~~~d~~~~pdgr~~~va~~------~sn~V~ViD~~t~kl~~~i~vgg~~Phpg 390 (567)
T 1qks_A 320 GKILLVDYTDLNNLKTTE---ISAERFLHDGGLDGSHRYFITAAN------ARNKLVVIDTKEGKLVAIEDTGGQTPHPG 390 (567)
T ss_dssp TEEEEEETTCSSEEEEEE---EECCSSEEEEEECTTSCEEEEEEG------GGTEEEEEETTTTEEEEEEECSSSSBCCT
T ss_pred CeEEEEecCCCccceeee---eeccccccCceECCCCCEEEEEeC------CCCeEEEEECCCCcEEEEEeccCcCCCCc
Confidence 468999988766544442 44556666665542 3 4455421 246799999998875443334 5666664
Q ss_pred cccEEEEEC-CcEEEEEcCCCCCCCCCeEEEEECCCCc-----EEEeecCCCCCCCCcceEEEEE--CCEEEEEecCCCC
Q 005043 250 SNHVAALYD-DKNLLIFGGSSKSKTLNDLYSLDFETMI-----WTRIKIRGFHPSPRAGCCGVLC--GTKWYIAGGGSRK 321 (717)
Q Consensus 250 ~~~aa~~~~-~~~lyV~GG~~~~~~~ndv~~yd~~t~~-----W~~v~~~g~~P~~R~~~sav~~--~~~IyV~GG~~~~ 321 (717)
.+... ... ++.+|+.+-.+ -+.|.++|..+.. |+.+....... .....+... +..+||---.+.+
T Consensus 391 ~g~~~-~~p~~g~v~~t~~~g----~~~Vsvid~~~~~~~~~~~kvv~~i~~~g--~g~~~i~~~p~~~~l~v~~~~~~~ 463 (567)
T 1qks_A 391 RGANF-VHPTFGPVWATSHMG----DDSVALIGTDPEGHPDNAWKILDSFPALG--GGSLFIKTHPNSQYLYVDATLNPE 463 (567)
T ss_dssp TCEEE-EETTTEEEEEEEBSS----SSEEEEEECCTTTCTTTBTSEEEEEECSC--SCCCCEECCTTCSEEEEECTTCSS
T ss_pred cceee-ECCCCCcEEEeCCCC----CCeEEEecCCCCCCccccCEEEEEEecCC--CCCEEEEeCCCCCeEEEecCCCCC
Confidence 44332 343 35577765322 1358888877632 87665531111 111112222 4578875422211
Q ss_pred -CccCeEEEEECCCC-------cEEEeecCC-CCCCCCCcceEEEEEEeCCCcEEEEEcCCCCCCCCeEEEEEccCCc
Q 005043 322 -KRHAETLIFDILKG-------EWSVAITSP-SSSVTSNKGFTLVLVQHKEKDFLVAFGGIKKEPSNQVEVLSIEKNE 390 (717)
Q Consensus 322 -~~~~dv~~yD~~t~-------~W~~l~~~p-~~~~~~r~g~s~v~v~~~~~~~I~v~GG~~~~~~n~v~vyd~~~~e 390 (717)
...+.|.+||..+. .+..++... ...+... ......-..+++.++|+.-+......+.|.+||..+.+
T Consensus 464 ~~~~~~v~v~d~~~~~~~g~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~G~~~~~s~~~~~~~~~~i~v~D~~t~~ 540 (567)
T 1qks_A 464 AEISGSVAVFDIKAMTGDGSDPEFKTLPIAEWAGITEGQ-PRVVQGEFNKDGTEVWFSVWNGKDQESALVVVDDKTLE 540 (567)
T ss_dssp HHHHTCEEEEEGGGCCCSSSCCCEEEECHHHHHTCCSSC-CEEEEEEECTTSSEEEEEEECCTTSCCEEEEEETTTTE
T ss_pred cccCceEEEEECCcccccccCCCcEEeccccccccCCCC-cceEeeeECCCCCEEEEEeecCCCCCCcEEEEECCCce
Confidence 12457999998765 334543100 0011111 11222223355678887644333446799999998876
No 197
>3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli}
Probab=93.82 E-value=5.8 Score=45.38 Aligned_cols=188 Identities=9% Similarity=0.094 Sum_probs=94.0
Q ss_pred CCEEEEEeccCCCCCCceEEEEEECCCCcEEEeeecCCCCCCceeeEEEEE-CCEEEEEccccCCCCCcCcEEEEEcCCC
Q 005043 156 GKKVLLVGGKTDSGSDRVSVWTFDTETECWSVVEAKGDIPVARSGHTVVRA-SSVLILFGGEDGKRRKLNDLHMFDLKSL 234 (717)
Q Consensus 156 ~~~Iyv~GG~~~~~~~~~~v~~yD~~t~~W~~l~~~g~~P~~R~~hs~~~~-~~~Lyv~GG~~~~~~~~~~v~~yD~~t~ 234 (717)
++.+++.|+.+ ..+.+||+.+..-...-. .....-.+++.. ++..++.|+.+. .+.+||....
T Consensus 441 ~g~~l~sgs~D------g~v~vwd~~~~~~~~~~~----~h~~~v~~~~~s~~~~~l~s~s~D~------~i~iwd~~~~ 504 (694)
T 3dm0_A 441 DGQFALSGSWD------GELRLWDLAAGVSTRRFV----GHTKDVLSVAFSLDNRQIVSASRDR------TIKLWNTLGE 504 (694)
T ss_dssp TSSEEEEEETT------SEEEEEETTTTEEEEEEE----CCSSCEEEEEECTTSSCEEEEETTS------CEEEECTTSC
T ss_pred CCCEEEEEeCC------CcEEEEECCCCcceeEEe----CCCCCEEEEEEeCCCCEEEEEeCCC------EEEEEECCCC
Confidence 56777777764 268899998875432211 111111223332 456677776553 3677776544
Q ss_pred ceEeccCCCCCCCCCcccEEE-EECCc--EEEEEcCCCCCCCCCeEEEEECCCCcEEEeecCCCCCCCCcceEEEEE--C
Q 005043 235 TWLPLHCTGTGPSPRSNHVAA-LYDDK--NLLIFGGSSKSKTLNDLYSLDFETMIWTRIKIRGFHPSPRAGCCGVLC--G 309 (717)
Q Consensus 235 ~W~~l~~~g~~P~~R~~~aa~-~~~~~--~lyV~GG~~~~~~~ndv~~yd~~t~~W~~v~~~g~~P~~R~~~sav~~--~ 309 (717)
.-..+.. .....+....++ ...+. .+++.|+.++ .|.+||+.+..-...-. .......++.+ +
T Consensus 505 ~~~~~~~--~~~~h~~~v~~~~~~~~~~~~~l~s~s~d~-----~v~vwd~~~~~~~~~~~-----~h~~~v~~v~~spd 572 (694)
T 3dm0_A 505 CKYTISE--GGEGHRDWVSCVRFSPNTLQPTIVSASWDK-----TVKVWNLSNCKLRSTLA-----GHTGYVSTVAVSPD 572 (694)
T ss_dssp EEEEECS--STTSCSSCEEEEEECSCSSSCEEEEEETTS-----CEEEEETTTCCEEEEEC-----CCSSCEEEEEECTT
T ss_pred cceeecc--CCCCCCCcEEEEEEeCCCCcceEEEEeCCC-----eEEEEECCCCcEEEEEc-----CCCCCEEEEEEeCC
Confidence 3222211 111111112222 22221 2567776654 48999998765443221 11111222222 6
Q ss_pred CEEEEEecCCCCCccCeEEEEECCCCcEEEeecCCCCCCCCCcceEEEEEEeCCCcEEEEEcCCCCCCCCeEEEEEccCC
Q 005043 310 TKWYIAGGGSRKKRHAETLIFDILKGEWSVAITSPSSSVTSNKGFTLVLVQHKEKDFLVAFGGIKKEPSNQVEVLSIEKN 389 (717)
Q Consensus 310 ~~IyV~GG~~~~~~~~dv~~yD~~t~~W~~l~~~p~~~~~~r~g~s~v~v~~~~~~~I~v~GG~~~~~~n~v~vyd~~~~ 389 (717)
+++++.||.++. |.+||+.+.+-.... . .......+.+.. ++.+++.|.. +.|.+||+.+.
T Consensus 573 g~~l~sg~~Dg~-----i~iwd~~~~~~~~~~--~-----~~~~v~~~~~sp--~~~~l~~~~~-----~~i~iwd~~~~ 633 (694)
T 3dm0_A 573 GSLCASGGKDGV-----VLLWDLAEGKKLYSL--E-----ANSVIHALCFSP--NRYWLCAATE-----HGIKIWDLESK 633 (694)
T ss_dssp SSEEEEEETTSB-----CEEEETTTTEEEECC--B-----CSSCEEEEEECS--SSSEEEEEET-----TEEEEEETTTT
T ss_pred CCEEEEEeCCCe-----EEEEECCCCceEEEe--c-----CCCcEEEEEEcC--CCcEEEEEcC-----CCEEEEECCCC
Confidence 778888886643 888999877533211 1 111233333432 3334444432 25888998776
Q ss_pred c
Q 005043 390 E 390 (717)
Q Consensus 390 e 390 (717)
+
T Consensus 634 ~ 634 (694)
T 3dm0_A 634 S 634 (694)
T ss_dssp E
T ss_pred C
Confidence 5
No 198
>2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A
Probab=93.65 E-value=2.8 Score=42.34 Aligned_cols=199 Identities=13% Similarity=0.121 Sum_probs=93.9
Q ss_pred CEEEEEcccCCCCCcccEEEEEcCCCceEEccccccCCCCCCCCCCCcccceEEEEE-C--CEEEEEeccCCCCCCceEE
Q 005043 99 NKMIVVGGESGNGLLDDVQVLNFDRFSWTAASSKLYLSPSSLPLKIPACRGHSLISW-G--KKVLLVGGKTDSGSDRVSV 175 (717)
Q Consensus 99 ~~lyV~GG~~~~~~~~~v~~yd~~t~~W~~l~~~~~~~~~~~~~~~p~r~~hs~v~~-~--~~Iyv~GG~~~~~~~~~~v 175 (717)
+.+++.|+.++ .+.+||+.+..|..+... ......-.+++.. + +.+++.|+.+ ..+
T Consensus 67 g~~l~s~s~D~-----~v~iWd~~~~~~~~~~~~----------~~h~~~v~~v~~~p~~~g~~l~s~s~d------~~v 125 (297)
T 2pm7_B 67 GTILASCSYDG-----KVMIWKEENGRWSQIAVH----------AVHSASVNSVQWAPHEYGPMLLVASSD------GKV 125 (297)
T ss_dssp CSEEEEEETTT-----EEEEEEBSSSCBCCCEEE----------CCCSSCEEEEEECCGGGCSEEEEEETT------SEE
T ss_pred CCEEEEEcCCC-----EEEEEEcCCCceEEEEEe----------ecCCCceeEEEeCcCCCCcEEEEEECC------CcE
Confidence 45777777553 588899988777554331 0111111222222 1 4566777653 257
Q ss_pred EEEECCCCc-EEEeeecCCCCCCceeeEEEEE--------------CCEEEEEccccCCCCCcCcEEEEEcCCCc--eEe
Q 005043 176 WTFDTETEC-WSVVEAKGDIPVARSGHTVVRA--------------SSVLILFGGEDGKRRKLNDLHMFDLKSLT--WLP 238 (717)
Q Consensus 176 ~~yD~~t~~-W~~l~~~g~~P~~R~~hs~~~~--------------~~~Lyv~GG~~~~~~~~~~v~~yD~~t~~--W~~ 238 (717)
.+||+.+.. +......+ .. ..-.++... ++.+++.||.++ .+.+||..+.. |..
T Consensus 126 ~~wd~~~~~~~~~~~~~~-h~--~~v~~~~~~p~~~~~~~~~~~~~~~~~l~sgs~D~------~v~lwd~~~~~~~~~~ 196 (297)
T 2pm7_B 126 SVVEFKENGTTSPIIIDA-HA--IGVNSASWAPATIEEDGEHNGTKESRKFVTGGADN------LVKIWKYNSDAQTYVL 196 (297)
T ss_dssp EEEEBCSSSCBCCEEEEC-CS--SCEEEEEECCCC------------CCEEEEEETTS------CEEEEEEETTTTEEEE
T ss_pred EEEEecCCCceeeeeeec-cc--CccceEeecCCcccccccCCCCCCcceEEEEcCCC------cEEEEEEcCCCceEEE
Confidence 777876542 21111000 00 001111111 135677777554 36667765533 543
Q ss_pred ccCCCCCCC-CCcccEEEEECC---cEEEEEcCCCCCCCCCeEEEEECCC--CcEEEeecCCCCCCCCcceEEEE-ECCE
Q 005043 239 LHCTGTGPS-PRSNHVAALYDD---KNLLIFGGSSKSKTLNDLYSLDFET--MIWTRIKIRGFHPSPRAGCCGVL-CGTK 311 (717)
Q Consensus 239 l~~~g~~P~-~R~~~aa~~~~~---~~lyV~GG~~~~~~~ndv~~yd~~t--~~W~~v~~~g~~P~~R~~~sav~-~~~~ 311 (717)
.. .+.. ...-.+++...+ ..+++.|+.++ .+.+||+.+ ..|....... ........+++. .+++
T Consensus 197 ~~---~l~~H~~~V~~v~~sp~~~~~~~las~s~D~-----~v~iWd~~~~~~~~~~~~~~~-~~~~~~v~~~~~s~~g~ 267 (297)
T 2pm7_B 197 ES---TLEGHSDWVRDVAWSPTVLLRSYMASVSQDR-----TCIIWTQDNEQGPWKKTLLKE-EKFPDVLWRASWSLSGN 267 (297)
T ss_dssp EE---EECCCSSCEEEEEECCCCSSSEEEEEEETTS-----CEEEEEESSTTSCCEEEESSS-SCCSSCEEEEEECSSSC
T ss_pred EE---EecCCCCceEEEEECCCCCCceEEEEEECCC-----cEEEEEeCCCCCccceeeeec-ccCCCcEEEEEECCCCC
Confidence 32 1111 111122333332 24677777654 378888765 3465432210 011122222222 2677
Q ss_pred EEEEecCCCCCccCeEEEEECC-CCcEEEee
Q 005043 312 WYIAGGGSRKKRHAETLIFDIL-KGEWSVAI 341 (717)
Q Consensus 312 IyV~GG~~~~~~~~dv~~yD~~-t~~W~~l~ 341 (717)
+++.||.++. +.+|+.. ...|..+.
T Consensus 268 ~las~~~D~~-----v~lw~~~~~g~w~~~~ 293 (297)
T 2pm7_B 268 VLALSGGDNK-----VTLWKENLEGKWEPAG 293 (297)
T ss_dssp CEEEEETTSC-----EEEEEECTTSCEEEC-
T ss_pred EEEEEcCCCc-----EEEEEECCCCcEEecc
Confidence 7888876644 6666654 45788764
No 199
>1npe_A Nidogen, entactin; glycoprotein, basement membrane, beta-propeller, EGF-like, structural protein; 2.30A {Mus musculus} SCOP: b.68.5.1
Probab=93.57 E-value=6.2 Score=38.97 Aligned_cols=198 Identities=7% Similarity=-0.081 Sum_probs=109.1
Q ss_pred eEEEEE--CCEEEEEcccCCCCCcccEEEEEcCCCceEEccccccCCCCCCCCCCCcccceEEEEE--CCEEEEEeccCC
Q 005043 92 HAAAVI--GNKMIVVGGESGNGLLDDVQVLNFDRFSWTAASSKLYLSPSSLPLKIPACRGHSLISW--GKKVLLVGGKTD 167 (717)
Q Consensus 92 haav~~--~~~lyV~GG~~~~~~~~~v~~yd~~t~~W~~l~~~~~~~~~~~~~~~p~r~~hs~v~~--~~~Iyv~GG~~~ 167 (717)
++.++. ++.||+.-.. .+.+++||+.+..-..+... ....-+++++. ++.||+.-..
T Consensus 39 ~gi~~d~~~~~ly~~d~~-----~~~I~~~~~~g~~~~~~~~~------------~~~~p~~ia~d~~~~~lyv~d~~-- 99 (267)
T 1npe_A 39 IGLAFDCVDKVVYWTDIS-----EPSIGRASLHGGEPTTIIRQ------------DLGSPEGIALDHLGRTIFWTDSQ-- 99 (267)
T ss_dssp EEEEEETTTTEEEEEETT-----TTEEEEEESSSCCCEEEECT------------TCCCEEEEEEETTTTEEEEEETT--
T ss_pred EEEEEecCCCEEEEEECC-----CCEEEEEecCCCCcEEEEEC------------CCCCccEEEEEecCCeEEEEECC--
Confidence 444444 5789988642 24689999987643332210 01122455554 5799998543
Q ss_pred CCCCceEEEEEECCCCcEEEeeecCCCCCCceeeEEEEE--CCEEEEEccccCCCCCcCcEEEEEcCCCceEeccCCCCC
Q 005043 168 SGSDRVSVWTFDTETECWSVVEAKGDIPVARSGHTVVRA--SSVLILFGGEDGKRRKLNDLHMFDLKSLTWLPLHCTGTG 245 (717)
Q Consensus 168 ~~~~~~~v~~yD~~t~~W~~l~~~g~~P~~R~~hs~~~~--~~~Lyv~GG~~~~~~~~~~v~~yD~~t~~W~~l~~~g~~ 245 (717)
.+.++++|+....-..+... .+. ....+++. ++.||+..... ..+.++++++....-..+.. ..+
T Consensus 100 ----~~~I~~~~~~g~~~~~~~~~-~~~---~P~~i~vd~~~g~lyv~~~~~----~~~~I~~~~~dg~~~~~~~~-~~~ 166 (267)
T 1npe_A 100 ----LDRIEVAKMDGTQRRVLFDT-GLV---NPRGIVTDPVRGNLYWTDWNR----DNPKIETSHMDGTNRRILAQ-DNL 166 (267)
T ss_dssp ----TTEEEEEETTSCSCEEEECS-SCS---SEEEEEEETTTTEEEEEECCS----SSCEEEEEETTSCCCEEEEC-TTC
T ss_pred ----CCEEEEEEcCCCCEEEEEEC-CCC---CccEEEEeeCCCEEEEEECCC----CCcEEEEEecCCCCcEEEEE-CCC
Confidence 23689999876543333221 111 22344444 57999975321 13578899886544333321 111
Q ss_pred CCCCcccEEEEE-CCcEEEEEcCCCCCCCCCeEEEEECCCCcEEEeecCCCCCCCCcceEEEEECCEEEEEecCCCCCcc
Q 005043 246 PSPRSNHVAALY-DDKNLLIFGGSSKSKTLNDLYSLDFETMIWTRIKIRGFHPSPRAGCCGVLCGTKWYIAGGGSRKKRH 324 (717)
Q Consensus 246 P~~R~~~aa~~~-~~~~lyV~GG~~~~~~~ndv~~yd~~t~~W~~v~~~g~~P~~R~~~sav~~~~~IyV~GG~~~~~~~ 324 (717)
. .-..+++- +++.||+.-.. .+.|++||+.+..-..+......| .+++..++.+|+.....
T Consensus 167 ~---~P~gia~d~~~~~lyv~d~~-----~~~I~~~~~~g~~~~~~~~~~~~P-----~gi~~d~~~lyva~~~~----- 228 (267)
T 1npe_A 167 G---LPNGLTFDAFSSQLCWVDAG-----THRAECLNPAQPGRRKVLEGLQYP-----FAVTSYGKNLYYTDWKT----- 228 (267)
T ss_dssp S---CEEEEEEETTTTEEEEEETT-----TTEEEEEETTEEEEEEEEECCCSE-----EEEEEETTEEEEEETTT-----
T ss_pred C---CCcEEEEcCCCCEEEEEECC-----CCEEEEEecCCCceEEEecCCCCc-----eEEEEeCCEEEEEECCC-----
Confidence 1 11233333 34568886543 357999999765433332211112 35556689999976433
Q ss_pred CeEEEEECCCCcEEE
Q 005043 325 AETLIFDILKGEWSV 339 (717)
Q Consensus 325 ~dv~~yD~~t~~W~~ 339 (717)
+.|+++|+.+.+...
T Consensus 229 ~~v~~~d~~~g~~~~ 243 (267)
T 1npe_A 229 NSVIAMDLAISKEMD 243 (267)
T ss_dssp TEEEEEETTTTEEEE
T ss_pred CeEEEEeCCCCCceE
Confidence 469999998876544
No 200
>3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae}
Probab=93.38 E-value=2.8 Score=42.50 Aligned_cols=186 Identities=12% Similarity=0.083 Sum_probs=93.2
Q ss_pred CCEEEEEeccCCCCCCceEEEEEECCCCc--EEEeeecCCCCCCceeeEEEE-ECCEEEEEccccCCCCCcCcEEEEEcC
Q 005043 156 GKKVLLVGGKTDSGSDRVSVWTFDTETEC--WSVVEAKGDIPVARSGHTVVR-ASSVLILFGGEDGKRRKLNDLHMFDLK 232 (717)
Q Consensus 156 ~~~Iyv~GG~~~~~~~~~~v~~yD~~t~~--W~~l~~~g~~P~~R~~hs~~~-~~~~Lyv~GG~~~~~~~~~~v~~yD~~ 232 (717)
.+++++.|..+ ..+.++|.++++ |+.-.. .....|.+.. -++.||+.+ -+.++.||+
T Consensus 4 ~~~~lv~~~~~------~~v~~~d~~tG~~~w~~~~~-----~~~~~~~~~~~pdG~ilvs~--------~~~V~~~d~- 63 (276)
T 3no2_A 4 PQHLLVGGSGW------NKIAIINKDTKEIVWEYPLE-----KGWECNSVAATKAGEILFSY--------SKGAKMITR- 63 (276)
T ss_dssp CCEEEEECTTC------SEEEEEETTTTEEEEEEECC-----TTCCCCEEEECTTSCEEEEC--------BSEEEEECT-
T ss_pred CCcEEEeeCCC------CEEEEEECCCCeEEEEeCCC-----ccCCCcCeEECCCCCEEEeC--------CCCEEEECC-
Confidence 35677776543 368899987776 765431 1112233333 467788732 145899999
Q ss_pred CC--ceEeccCCCCCCCCCcccEEEEECCcEEEEEcCCCCCCCCCeEEEEECCCCc-EEEeecCCC-CCCCCcceEEEEE
Q 005043 233 SL--TWLPLHCTGTGPSPRSNHVAALYDDKNLLIFGGSSKSKTLNDLYSLDFETMI-WTRIKIRGF-HPSPRAGCCGVLC 308 (717)
Q Consensus 233 t~--~W~~l~~~g~~P~~R~~~aa~~~~~~~lyV~GG~~~~~~~ndv~~yd~~t~~-W~~v~~~g~-~P~~R~~~sav~~ 308 (717)
+. .|+.-. +.....+++....+..+++..... ...++.+|++... |+.-...+. .+...........
T Consensus 64 ~G~~~W~~~~-----~~~~~~~~~~~~~dG~~lv~~~~~----~~~v~~vd~~Gk~l~~~~~~~~~~~~~~~~~~v~~~~ 134 (276)
T 3no2_A 64 DGRELWNIAA-----PAGCEMQTARILPDGNALVAWCGH----PSTILEVNMKGEVLSKTEFETGIERPHAQFRQINKNK 134 (276)
T ss_dssp TSCEEEEEEC-----CTTCEEEEEEECTTSCEEEEEEST----TEEEEEECTTSCEEEEEEECCSCSSGGGSCSCCEECT
T ss_pred CCCEEEEEcC-----CCCccccccEECCCCCEEEEecCC----CCEEEEEeCCCCEEEEEeccCCCCcccccccCceECC
Confidence 44 376432 111223344444444355443321 1358888885543 442211110 0111111222334
Q ss_pred CCEEEEEecCCCCCccCeEEEEECCCC-cEEEeecCCCCCCCCCcceEEEEEEeCCCcEEEEEcCCCCCCCCeEEEEEcc
Q 005043 309 GTKWYIAGGGSRKKRHAETLIFDILKG-EWSVAITSPSSSVTSNKGFTLVLVQHKEKDFLVAFGGIKKEPSNQVEVLSIE 387 (717)
Q Consensus 309 ~~~IyV~GG~~~~~~~~dv~~yD~~t~-~W~~l~~~p~~~~~~r~g~s~v~v~~~~~~~I~v~GG~~~~~~n~v~vyd~~ 387 (717)
++.+++....+ ..+.+||++.+ .|+.-. + . .-+++.... ++.+++.+..+ ..|..||+.
T Consensus 135 ~G~~lv~~~~~-----~~v~~~d~~G~~~w~~~~--~-~-----~~~~~~~~~---~g~~~v~~~~~----~~v~~~d~~ 194 (276)
T 3no2_A 135 KGNYLVPLFAT-----SEVREIAPNGQLLNSVKL--S-G-----TPFSSAFLD---NGDCLVACGDA----HCFVQLNLE 194 (276)
T ss_dssp TSCEEEEETTT-----TEEEEECTTSCEEEEEEC--S-S-----CCCEEEECT---TSCEEEECBTT----SEEEEECTT
T ss_pred CCCEEEEecCC-----CEEEEECCCCCEEEEEEC--C-C-----CccceeEcC---CCCEEEEeCCC----CeEEEEeCc
Confidence 66666665432 35899998743 365532 1 1 113333332 45566665542 257888887
Q ss_pred CCc
Q 005043 388 KNE 390 (717)
Q Consensus 388 ~~e 390 (717)
+.+
T Consensus 195 tG~ 197 (276)
T 3no2_A 195 SNR 197 (276)
T ss_dssp TCC
T ss_pred CCc
Confidence 655
No 201
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=93.19 E-value=0.021 Score=65.25 Aligned_cols=57 Identities=18% Similarity=0.218 Sum_probs=47.2
Q ss_pred CCccchhhHHHHHHHHHHHHHHhhhhccchhhccccceeeEEEeehhhhhhhhhccc
Q 005043 651 DNVRLEHDVAFLKAVLDDTQKELHSTRGVLAGERARAFQLQVEVFHLKQRLQSLENR 707 (717)
Q Consensus 651 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 707 (717)
++-+++.++.-+++-++..++|.-..+..+-.++.+.|.|+-|.-++++.|+.+|..
T Consensus 524 ~~~~~~~~~~~~~~~~~~~~~~~~~le~~~~~~~~~~~~l~~e~~~~~~~~~~l~~~ 580 (597)
T 3oja_B 524 ETQARRTEADAKQKETEDLEQENIALEKQLDNKRAKQAELRQETSLKRQKVKQLEAK 580 (597)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHhhhhhhcchhhHHhhhHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 344566777778888888888888888889999999999999999999999888843
No 202
>1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A
Probab=93.01 E-value=5.5 Score=40.18 Aligned_cols=144 Identities=13% Similarity=0.026 Sum_probs=75.1
Q ss_pred CCEEEEEeccCCCCCCceEEEEEECCCCc----EEEeeecCCCCCCceeeEEEE-ECCE-EEEEccccCCCCCcCcEEEE
Q 005043 156 GKKVLLVGGKTDSGSDRVSVWTFDTETEC----WSVVEAKGDIPVARSGHTVVR-ASSV-LILFGGEDGKRRKLNDLHMF 229 (717)
Q Consensus 156 ~~~Iyv~GG~~~~~~~~~~v~~yD~~t~~----W~~l~~~g~~P~~R~~hs~~~-~~~~-Lyv~GG~~~~~~~~~~v~~y 229 (717)
++.+++.|+.+ ..+.+||+.+.. ...... ....-.+++. -++. +++.|+.+ ..+.+|
T Consensus 22 ~~~~l~~~~~d------~~v~iw~~~~~~~~~~~~~~~~-----~~~~v~~~~~~~~~~~~l~~~~~d------g~i~~w 84 (342)
T 1yfq_A 22 SKSLLLITSWD------GSLTVYKFDIQAKNVDLLQSLR-----YKHPLLCCNFIDNTDLQIYVGTVQ------GEILKV 84 (342)
T ss_dssp GGTEEEEEETT------SEEEEEEEETTTTEEEEEEEEE-----CSSCEEEEEEEESSSEEEEEEETT------SCEEEE
T ss_pred CCCEEEEEcCC------CeEEEEEeCCCCccccceeeee-----cCCceEEEEECCCCCcEEEEEcCC------CeEEEE
Confidence 45566666643 257777776655 332221 1112223333 3566 77777754 358899
Q ss_pred Ec-CCCceEeccCCCCCCCCCcccEEEEECCcEEEEEcCCCCCCCCCeEEEEECCCCc-------EEEeecCCCCCCCCc
Q 005043 230 DL-KSLTWLPLHCTGTGPSPRSNHVAALYDDKNLLIFGGSSKSKTLNDLYSLDFETMI-------WTRIKIRGFHPSPRA 301 (717)
Q Consensus 230 D~-~t~~W~~l~~~g~~P~~R~~~aa~~~~~~~lyV~GG~~~~~~~ndv~~yd~~t~~-------W~~v~~~g~~P~~R~ 301 (717)
|+ .+.....+. ..+....-.++....+. +++.|+.++ .+..||+.+.. ...+... .....
T Consensus 85 d~~~~~~~~~~~---~~~~~~~v~~l~~~~~~-~l~s~~~d~-----~i~iwd~~~~~~~~~~~~~~~~~~~---~~~~~ 152 (342)
T 1yfq_A 85 DLIGSPSFQALT---NNEANLGICRICKYGDD-KLIAASWDG-----LIEVIDPRNYGDGVIAVKNLNSNNT---KVKNK 152 (342)
T ss_dssp CSSSSSSEEECB---SCCCCSCEEEEEEETTT-EEEEEETTS-----EEEEECHHHHTTBCEEEEESCSSSS---SSCCC
T ss_pred EeccCCceEecc---ccCCCCceEEEEeCCCC-EEEEEcCCC-----eEEEEcccccccccccccCCeeeEE---eeCCc
Confidence 99 888766554 11122222334444455 666776543 58888875300 1112111 22222
Q ss_pred ceEEEEECCEEEEEecCCCCCccCeEEEEECCC
Q 005043 302 GCCGVLCGTKWYIAGGGSRKKRHAETLIFDILK 334 (717)
Q Consensus 302 ~~sav~~~~~IyV~GG~~~~~~~~dv~~yD~~t 334 (717)
-.++....+. +++|+.+ ..+.+||+.+
T Consensus 153 v~~~~~~~~~-l~~~~~d-----~~i~i~d~~~ 179 (342)
T 1yfq_A 153 IFTMDTNSSR-LIVGMNN-----SQVQWFRLPL 179 (342)
T ss_dssp EEEEEECSSE-EEEEEST-----TEEEEEESSC
T ss_pred eEEEEecCCc-EEEEeCC-----CeEEEEECCc
Confidence 2334444555 6666544 3589999987
No 203
>2oiz_A Aromatic amine dehydrogenase, large subunit; oxidoreductase, tryptophan tryptophyl quinone, H-tunneling; HET: TRQ TSR PG4; 1.05A {Alcaligenes faecalis} PDB: 2agw_A* 2agx_A* 2agl_A* 2agz_A* 2ah0_A* 2ah1_A* 2hj4_A* 2hjb_A* 2i0t_A* 2iup_A* 2iuq_A* 2iur_A* 2iuv_A* 2agy_A* 2ok4_A* 2ok6_A* 2iaa_A* 2h47_A* 2h3x_A* 2hkr_A* ...
Probab=93.00 E-value=10 Score=39.72 Aligned_cols=66 Identities=15% Similarity=0.342 Sum_probs=39.9
Q ss_pred CCEEEEEecCCC-----CCccCeEEEEECCCCcEEEeecCCCCCCCCCcceEEEEEEeCCCcEEEEEcCCCCCCCCeEEE
Q 005043 309 GTKWYIAGGGSR-----KKRHAETLIFDILKGEWSVAITSPSSSVTSNKGFTLVLVQHKEKDFLVAFGGIKKEPSNQVEV 383 (717)
Q Consensus 309 ~~~IyV~GG~~~-----~~~~~dv~~yD~~t~~W~~l~~~p~~~~~~r~g~s~v~v~~~~~~~I~v~GG~~~~~~n~v~v 383 (717)
++++|+....++ ....+.++++|+.+.+- +...+.. . -++++ +. +++.+||+.++ +.|.+
T Consensus 265 g~~lyv~~~~~~~~~~~~~~~~~v~viD~~t~~~--v~~i~~~----~-p~~ia-~s-pdg~~l~v~n~------~~v~v 329 (361)
T 2oiz_A 265 SGRMYVFMHPDGKEGTHKFPAAEIWVMDTKTKQR--VARIPGR----D-ALSMT-ID-QQRNLMLTLDG------GNVNV 329 (361)
T ss_dssp TTEEEEEEESSCCTTCTTCCCSEEEEEETTTTEE--EEEEECT----T-CCEEE-EE-TTTTEEEEECS------SCEEE
T ss_pred CCeEEEEEccCCCcccccCCCceEEEEECCCCcE--EEEEecC----C-eeEEE-EC-CCCCEEEEeCC------CeEEE
Confidence 589999864211 12346899999988753 3322221 2 33333 33 23457776653 58999
Q ss_pred EEccCC
Q 005043 384 LSIEKN 389 (717)
Q Consensus 384 yd~~~~ 389 (717)
||..+.
T Consensus 330 ~D~~t~ 335 (361)
T 2oiz_A 330 YDISQP 335 (361)
T ss_dssp EECSSS
T ss_pred EECCCC
Confidence 999887
No 204
>3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}
Probab=92.99 E-value=9.1 Score=39.99 Aligned_cols=152 Identities=15% Similarity=0.109 Sum_probs=75.7
Q ss_pred CCEEEEEeccCCCCCCceEEEEEECCCC--cEEEeeecCCCCCCceeeEEEEE-CCEEEEEccccCCCCCcCcEEEEEcC
Q 005043 156 GKKVLLVGGKTDSGSDRVSVWTFDTETE--CWSVVEAKGDIPVARSGHTVVRA-SSVLILFGGEDGKRRKLNDLHMFDLK 232 (717)
Q Consensus 156 ~~~Iyv~GG~~~~~~~~~~v~~yD~~t~--~W~~l~~~g~~P~~R~~hs~~~~-~~~Lyv~GG~~~~~~~~~~v~~yD~~ 232 (717)
++.+++.|+.+. .+.+||+... ....+.. ... .-.+++.. ++..++.|+.++ .+.+||+.
T Consensus 217 ~~~~l~sgs~D~------~v~~wd~~~~~~~~~~~~~----h~~-~v~~v~~~p~~~~l~s~s~D~------~i~lwd~~ 279 (380)
T 3iz6_a 217 NANMFISGSCDT------TVRLWDLRITSRAVRTYHG----HEG-DINSVKFFPDGQRFGTGSDDG------TCRLFDMR 279 (380)
T ss_dssp SCCEEEEEETTS------CEEEEETTTTCCCCEEECC----CSS-CCCEEEECTTSSEEEEECSSS------CEEEEETT
T ss_pred CCCEEEEEECCC------eEEEEECCCCCcceEEECC----cCC-CeEEEEEecCCCeEEEEcCCC------eEEEEECC
Confidence 567888888643 5788887632 2222211 011 11223333 467777777554 37889988
Q ss_pred CCceEeccCCC-CC-CCC-CcccEEEEECCcEEEEEcCCCCCCCCCeEEEEECCCCcEEEee-cCCCCCCCCcceEEEEE
Q 005043 233 SLTWLPLHCTG-TG-PSP-RSNHVAALYDDKNLLIFGGSSKSKTLNDLYSLDFETMIWTRIK-IRGFHPSPRAGCCGVLC 308 (717)
Q Consensus 233 t~~W~~l~~~g-~~-P~~-R~~~aa~~~~~~~lyV~GG~~~~~~~ndv~~yd~~t~~W~~v~-~~g~~P~~R~~~sav~~ 308 (717)
+..-...-... .. ... ..-.+++...+..+++.|+.++ .+.+||..+..-.... ........+..+-+..-
T Consensus 280 ~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~dg-----~i~vwd~~~~~~~~~~~~~~~~h~~~v~~l~~s~ 354 (380)
T 3iz6_a 280 TGHQLQVYNREPDRNDNELPIVTSVAFSISGRLLFAGYSNG-----DCYVWDTLLAEMVLNLGTLQNSHEGRISCLGLSS 354 (380)
T ss_dssp TTEEEEEECCCCSSSCCSSCSCSEEEECSSSSEEEEECTTS-----CEEEEETTTCCEEEEECCSCSSCCCCCCEEEECS
T ss_pred CCcEEEEecccccccccccCceEEEEECCCCCEEEEEECCC-----CEEEEECCCCceEEEEecccCCCCCceEEEEECC
Confidence 76533221000 00 000 0122333333333666676543 4999998776543321 11000111222222223
Q ss_pred CCEEEEEecCCCCCccCeEEEEECCC
Q 005043 309 GTKWYIAGGGSRKKRHAETLIFDILK 334 (717)
Q Consensus 309 ~~~IyV~GG~~~~~~~~dv~~yD~~t 334 (717)
++..++.||.++. +.+|++..
T Consensus 355 dg~~l~sgs~D~~-----i~iW~~~~ 375 (380)
T 3iz6_a 355 DGSALCTGSWDKN-----LKIWAFSG 375 (380)
T ss_dssp SSSEEEEECTTSC-----EEEEECCS
T ss_pred CCCEEEEeeCCCC-----EEEEecCC
Confidence 6788888887654 77777654
No 205
>1kv9_A Type II quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM EPE; 1.90A {Pseudomonas putida} SCOP: a.3.1.6 b.70.1.1
Probab=92.88 E-value=16 Score=41.86 Aligned_cols=123 Identities=11% Similarity=0.048 Sum_probs=68.8
Q ss_pred EEEECCEEEEEeccCCCCCCceEEEEEECCCCc--EEEeeecCCC-----CCCceeeEEEEECCEEEEEccccCCCCCcC
Q 005043 152 LISWGKKVLLVGGKTDSGSDRVSVWTFDTETEC--WSVVEAKGDI-----PVARSGHTVVRASSVLILFGGEDGKRRKLN 224 (717)
Q Consensus 152 ~v~~~~~Iyv~GG~~~~~~~~~~v~~yD~~t~~--W~~l~~~g~~-----P~~R~~hs~~~~~~~Lyv~GG~~~~~~~~~ 224 (717)
-++.++.||+.... ..++.+|..|++ |+.-...... .......+.++.+++||+... -.
T Consensus 62 P~v~~g~vyv~~~~-------~~v~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~~~-------dg 127 (668)
T 1kv9_A 62 PLFHDGVIYTSMSW-------SRVIAVDAASGKELWRYDPEVAKVKARTSCCDAVNRGVALWGDKVYVGTL-------DG 127 (668)
T ss_dssp CEEETTEEEEEEGG-------GEEEEEETTTCCEEEEECCCCCGGGGGGCTTCSCCCCCEEEBTEEEEECT-------TS
T ss_pred CEEECCEEEEECCC-------CeEEEEECCCChhceEECCCCCccccccccccCCccceEEECCEEEEEcC-------CC
Confidence 35679999998653 369999988765 8864321100 000112234557888887531 24
Q ss_pred cEEEEEcCCCc--eEeccCCCCCCCCCcccEEEEECCcEEEEEcCCCCCCCCCeEEEEECCCCc--EEEe
Q 005043 225 DLHMFDLKSLT--WLPLHCTGTGPSPRSNHVAALYDDKNLLIFGGSSKSKTLNDLYSLDFETMI--WTRI 290 (717)
Q Consensus 225 ~v~~yD~~t~~--W~~l~~~g~~P~~R~~~aa~~~~~~~lyV~GG~~~~~~~ndv~~yd~~t~~--W~~v 290 (717)
.++.+|..+.+ |+.-... .........+.++.++. +|+..+.........++.||+.+++ |+.-
T Consensus 128 ~l~alD~~tG~~~W~~~~~~-~~~~~~~~~~P~v~~~~-v~vg~~~~~~~~~g~v~a~D~~tG~~~W~~~ 195 (668)
T 1kv9_A 128 RLIALDAKTGKAIWSQQTTD-PAKPYSITGAPRVVKGK-VIIGNGGAEYGVRGFVSAYDADTGKLAWRFY 195 (668)
T ss_dssp EEEEEETTTCCEEEEEECSC-TTSSCBCCSCCEEETTE-EEECCBCTTTCCBCEEEEEETTTCCEEEEEE
T ss_pred EEEEEECCCCCEeeeeccCC-CCCcceecCCCEEECCE-EEEeCCCCCcCCCCEEEEEECCCCcEEEEec
Confidence 69999998775 8764311 10111112233445555 5553222112234579999998765 8764
No 206
>2fxo_A Myosin heavy chain, cardiac muscle beta isoform; coiled coil (dimeric, parallel), familial hypertrophic cardiomyopathy, FHC-associated mutant E924K; 2.50A {Homo sapiens} SCOP: h.1.26.1 PDB: 2fxm_A
Probab=92.83 E-value=0.96 Score=40.95 Aligned_cols=88 Identities=27% Similarity=0.320 Sum_probs=73.3
Q ss_pred HHHHHHHHHHHHHhcchhHHHHHHHhhHHHHHhhhhhHHhhHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhccccccc
Q 005043 569 QFYESKMAALIRKNGILEGQLAAALVNREAAEKNFSSVLKSRQEMEKKLADSLKEMELLKEKLAGLELAQEEANSLSNIV 648 (717)
Q Consensus 569 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 648 (717)
.-++.+...++.....|-.||.+-......||..+......+++||.+|.++...++...+..+.+..+...
T Consensus 37 ~ele~~~~~l~~Ek~~L~~qL~~E~~~l~e~EE~~~~L~~~k~eLe~~l~el~~rleeeee~~~~L~~~kkk-------- 108 (129)
T 2fxo_A 37 KELEEKMVSLLQEKNDLQLQVQAEQDNLADAEERCDQLIKNKIQLEAKVKEMNKRLEDEEEMNAELTAKKRK-------- 108 (129)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------
Confidence 456778888999999999999999999999999999999999999999999999999998888888766544
Q ss_pred ccCCccchhhHHHHHHHHHHHH
Q 005043 649 HSDNVRLEHDVAFLKAVLDDTQ 670 (717)
Q Consensus 649 ~~~~~~~~~~~~~~~~~~~~~~ 670 (717)
||.++.=||-=|+|..
T Consensus 109 ------le~e~~~Lk~~led~e 124 (129)
T 2fxo_A 109 ------LEDECSELKRDIDDLE 124 (129)
T ss_dssp ------HHHHHHHHHHHHHHHH
T ss_pred ------HHHHHHHHHHHHHHHH
Confidence 4666666666666643
No 207
>3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens}
Probab=92.77 E-value=1.6 Score=44.48 Aligned_cols=148 Identities=14% Similarity=0.151 Sum_probs=74.0
Q ss_pred CCEEEEEcccCCCCCcccEEEEEcCCCc--eEEccccccCCCCCCCCCCCcccceEEE-----EECCEEEEEeccCCCCC
Q 005043 98 GNKMIVVGGESGNGLLDDVQVLNFDRFS--WTAASSKLYLSPSSLPLKIPACRGHSLI-----SWGKKVLLVGGKTDSGS 170 (717)
Q Consensus 98 ~~~lyV~GG~~~~~~~~~v~~yd~~t~~--W~~l~~~~~~~~~~~~~~~p~r~~hs~v-----~~~~~Iyv~GG~~~~~~ 170 (717)
++.+++.|+.++ .+.+||+.+.. ...+... .......-.+++ ..++.+++.|+.+
T Consensus 128 ~~~~l~~~~~d~-----~i~vwd~~~~~~~~~~~~~~---------~~~~~~~v~~~~~~~~~~~~~~~l~~~~~d---- 189 (357)
T 3i2n_A 128 GAPEIVTGSRDG-----TVKVWDPRQKDDPVANMEPV---------QGENKRDCWTVAFGNAYNQEERVVCAGYDN---- 189 (357)
T ss_dssp CCCEEEEEETTS-----CEEEECTTSCSSCSEEECCC---------TTSCCCCEEEEEEECCCC-CCCEEEEEETT----
T ss_pred CccEEEEEeCCC-----eEEEEeCCCCCCcceecccc---------CCCCCCceEEEEEEeccCCCCCEEEEEccC----
Confidence 455666776543 58889988754 3333221 000011112222 1356677777653
Q ss_pred CceEEEEEECCCCcEEEeeecCCCCCCceeeEEEEE----CCEEEEEccccCCCCCcCcEEEEEcCCCc----eEeccCC
Q 005043 171 DRVSVWTFDTETECWSVVEAKGDIPVARSGHTVVRA----SSVLILFGGEDGKRRKLNDLHMFDLKSLT----WLPLHCT 242 (717)
Q Consensus 171 ~~~~v~~yD~~t~~W~~l~~~g~~P~~R~~hs~~~~----~~~Lyv~GG~~~~~~~~~~v~~yD~~t~~----W~~l~~~ 242 (717)
..+.+||+.+..-..... .. ..-.+++.. ++..++.|+.+ ..+.+||+.+.. +....
T Consensus 190 --~~i~i~d~~~~~~~~~~~---~~--~~v~~~~~~~~~~~~~~l~~~~~d------g~i~i~d~~~~~~~~~~~~~~-- 254 (357)
T 3i2n_A 190 --GDIKLFDLRNMALRWETN---IK--NGVCSLEFDRKDISMNKLVATSLE------GKFHVFDMRTQHPTKGFASVS-- 254 (357)
T ss_dssp --SEEEEEETTTTEEEEEEE---CS--SCEEEEEESCSSSSCCEEEEEEST------TEEEEEEEEEEETTTEEEEEE--
T ss_pred --CeEEEEECccCceeeecC---CC--CceEEEEcCCCCCCCCEEEEECCC------CeEEEEeCcCCCcccceeeec--
Confidence 268999998877533321 11 122333443 45667777644 347778875432 11000
Q ss_pred CCCCCCCcccEEEEECCcE-EEEEcCCCCCCCCCeEEEEECCC
Q 005043 243 GTGPSPRSNHVAALYDDKN-LLIFGGSSKSKTLNDLYSLDFET 284 (717)
Q Consensus 243 g~~P~~R~~~aa~~~~~~~-lyV~GG~~~~~~~ndv~~yd~~t 284 (717)
.......-.++....+.. +++.|+.++ .+.+||+.+
T Consensus 255 -~~~~~~~v~~~~~~~~~~~~l~~~~~dg-----~i~iwd~~~ 291 (357)
T 3i2n_A 255 -EKAHKSTVWQVRHLPQNRELFLTAGGAG-----GLHLWKYEY 291 (357)
T ss_dssp -EECCSSCEEEEEEETTEEEEEEEEETTS-----EEEEEEEEC
T ss_pred -cCCCcCCEEEEEECCCCCcEEEEEeCCC-----cEEEeecCC
Confidence 001122223344455443 677777653 477888754
No 208
>3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A
Probab=92.73 E-value=8.5 Score=38.21 Aligned_cols=28 Identities=11% Similarity=0.133 Sum_probs=19.1
Q ss_pred CCEEEEEecCCCCCccCeEEEEECCCC-cEEEee
Q 005043 309 GTKWYIAGGGSRKKRHAETLIFDILKG-EWSVAI 341 (717)
Q Consensus 309 ~~~IyV~GG~~~~~~~~dv~~yD~~t~-~W~~l~ 341 (717)
++++++.||.++. +.+||+.+. .|..+.
T Consensus 317 ~~~~l~s~~~dg~-----v~iw~~~~~~~~~~~~ 345 (351)
T 3f3f_A 317 TGTILSSAGDDGK-----VRLWKATYSNEFKCMS 345 (351)
T ss_dssp SSCCEEEEETTSC-----EEEEEECTTSCEEEEE
T ss_pred CCCEEEEecCCCc-----EEEEecCcCcchhhee
Confidence 5677777776544 788887663 666655
No 209
>1w6s_A Methanol dehydrogenase subunit 1; anisotropic, electron transfer, oxidoreductase, calcium- binding, methanol utilization, PQQ; HET: PQQ; 1.2A {Methylobacterium extorquens} SCOP: b.70.1.1 PDB: 1h4i_A* 1h4j_A* 2d0v_A* 1lrw_A*
Probab=92.69 E-value=8.3 Score=43.93 Aligned_cols=124 Identities=10% Similarity=0.081 Sum_probs=66.7
Q ss_pred EEEECCEEEEEeccCCCCCCceEEEEEEC-CCCc--EEEeeecCC--CCCC---ceeeEEEE--ECCE----EEEEcccc
Q 005043 152 LISWGKKVLLVGGKTDSGSDRVSVWTFDT-ETEC--WSVVEAKGD--IPVA---RSGHTVVR--ASSV----LILFGGED 217 (717)
Q Consensus 152 ~v~~~~~Iyv~GG~~~~~~~~~~v~~yD~-~t~~--W~~l~~~g~--~P~~---R~~hs~~~--~~~~----Lyv~GG~~ 217 (717)
-++.++.||+.+.. ...++.+|. .+++ |+.-..... .+.. ....+.++ .++. ||+...
T Consensus 58 P~v~~g~vyv~~~~------~~~v~AlD~~~tG~~lW~~~~~~~~~~~~~~~~~~~~~g~av~p~~g~~~~rV~v~t~-- 129 (599)
T 1w6s_A 58 PLVVDGKMYIHTSF------PNNTFALGLDDPGTILWQDKPKQNPAARAVACCDLVNRGLAYWPGDGKTPALILKTQL-- 129 (599)
T ss_dssp CEEETTEEEEECST------TTCEEEEETTCTTSEEEEECCCCCGGGGGGCSSCSCCCCCEEECCCSSSCCEEEEECT--
T ss_pred cEEECCEEEEEeCC------CCEEEEEeCCCCCcEEEEECCCCCccccccccccccccceEEEecCCcceeEEEEEcC--
Confidence 35569999998652 125999999 7765 987542110 0001 11223444 5666 777532
Q ss_pred CCCCCcCcEEEEEcCCCc--eEeccCCCCCCCC-CcccEEEEECCcEEEEEcCCCCCCCCCeEEEEECCCCc--EEEee
Q 005043 218 GKRRKLNDLHMFDLKSLT--WLPLHCTGTGPSP-RSNHVAALYDDKNLLIFGGSSKSKTLNDLYSLDFETMI--WTRIK 291 (717)
Q Consensus 218 ~~~~~~~~v~~yD~~t~~--W~~l~~~g~~P~~-R~~~aa~~~~~~~lyV~GG~~~~~~~ndv~~yd~~t~~--W~~v~ 291 (717)
-..++.+|..+.+ |+.-.. ..... ....+-++.++. +|+-.+.........++.||..+++ |+.-.
T Consensus 130 -----dg~l~AlDa~TG~~~W~~~~~--~~~~~~~~~ssP~v~~g~-V~vg~~g~e~g~~g~v~A~D~~TG~~~W~~~~ 200 (599)
T 1w6s_A 130 -----DGNVAALNAETGETVWKVENS--DIKVGSTLTIAPYVVKDK-VIIGSSGAELGVRGYLTAYDVKTGEQVWRAYA 200 (599)
T ss_dssp -----TSEEEEEETTTCCEEEEEECC--CGGGTCBCCSCCEEETTE-EEECCBCGGGTCCCEEEEEETTTCCEEEEEES
T ss_pred -----CCEEEEEECCCCCEEEeecCC--CCCccceeecCCEEECCE-EEEEecccccCCCCeEEEEECCCCcEEEEEcC
Confidence 2468999988775 875321 10000 111222445555 5553221111124579999998765 87553
No 210
>3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A*
Probab=92.58 E-value=10 Score=38.77 Aligned_cols=208 Identities=10% Similarity=0.039 Sum_probs=106.8
Q ss_pred CCEEEEEcccCCCCCcccEEEEEcCCC--ceEEccccccCCCCCCCCCCCcccceEEEEE--CCEEEEEeccCCCCCCce
Q 005043 98 GNKMIVVGGESGNGLLDDVQVLNFDRF--SWTAASSKLYLSPSSLPLKIPACRGHSLISW--GKKVLLVGGKTDSGSDRV 173 (717)
Q Consensus 98 ~~~lyV~GG~~~~~~~~~v~~yd~~t~--~W~~l~~~~~~~~~~~~~~~p~r~~hs~v~~--~~~Iyv~GG~~~~~~~~~ 173 (717)
++.||+....+ ..+.+||+... .-..+......... ......-..+++. ++.||+..++. ..
T Consensus 101 ~g~l~v~d~~~-----~~v~~~~~~g~~~~~~~~~~~~~~g~~----~~~~~~P~~ia~~~~~g~lyv~d~~~-----~~ 166 (329)
T 3fvz_A 101 DGNYWVTDVAL-----HQVFKLDPHSKEGPLLILGRSMQPGSD----QNHFCQPTDVAVEPSTGAVFVSDGYC-----NS 166 (329)
T ss_dssp TSCEEEEETTT-----TEEEEECTTCSSCCSEEESBTTBCCCS----TTCCSSEEEEEECTTTCCEEEEECSS-----CC
T ss_pred CCCEEEEECCC-----CEEEEEeCCCCeEEEEEecccCCCCCC----ccccCCCcEEEEeCCCCeEEEEeCCC-----CC
Confidence 56788876532 36899998765 22222211000000 0011112344444 58899997531 23
Q ss_pred EEEEEECCCCcEEEeeecCCC----CCC-ceeeEEEEE-C-CEEEEEccccCCCCCcCcEEEEEcCCCceEeccCCCCCC
Q 005043 174 SVWTFDTETECWSVVEAKGDI----PVA-RSGHTVVRA-S-SVLILFGGEDGKRRKLNDLHMFDLKSLTWLPLHCTGTGP 246 (717)
Q Consensus 174 ~v~~yD~~t~~W~~l~~~g~~----P~~-R~~hs~~~~-~-~~Lyv~GG~~~~~~~~~~v~~yD~~t~~W~~l~~~g~~P 246 (717)
.+.+||+....-..+...+.. +.. ..-+.+++. + +.||+.... .+.+.+||+.+.+....-. ...
T Consensus 167 ~I~~~~~~g~~~~~~~~~g~~~~~~~~~~~~p~gia~d~~~g~l~v~d~~------~~~I~~~~~~~G~~~~~~~--~~~ 238 (329)
T 3fvz_A 167 RIVQFSPSGKFVTQWGEESSGSSPRPGQFSVPHSLALVPHLDQLCVADRE------NGRIQCFKTDTKEFVREIK--HAS 238 (329)
T ss_dssp EEEEECTTSCEEEEECEECCSSSCCTTEESCEEEEEEETTTTEEEEEETT------TTEEEEEETTTCCEEEEEC--CTT
T ss_pred eEEEEcCCCCEEEEeccCCCCCCCCCcccCCCcEEEEECCCCEEEEEECC------CCEEEEEECCCCcEEEEEe--ccc
Confidence 699999665544444322211 111 123445554 3 799998532 3569999998666544321 111
Q ss_pred CCCcccEEEEECCcEEEEEcCCCC--CCCCCeEEEEECCCCcEEEeecCCCCCCCCcceEEEEE-CCEEEEEecCCCCCc
Q 005043 247 SPRSNHVAALYDDKNLLIFGGSSK--SKTLNDLYSLDFETMIWTRIKIRGFHPSPRAGCCGVLC-GTKWYIAGGGSRKKR 323 (717)
Q Consensus 247 ~~R~~~aa~~~~~~~lyV~GG~~~--~~~~ndv~~yd~~t~~W~~v~~~g~~P~~R~~~sav~~-~~~IyV~GG~~~~~~ 323 (717)
....-.+.+... ..+|+..|... ......+.+||+.++.....-... ......-.++++. ++.|||....+.
T Consensus 239 ~~~~~~~~~~~p-g~~~~~~g~~~v~~~~~~~v~~~~~~~g~~~~~~~~~-~~~~~~p~~ia~~~dG~lyvad~~~~--- 313 (329)
T 3fvz_A 239 FGRNVFAISYIP-GFLFAVNGKPYFGDQEPVQGFVMNFSSGEIIDVFKPV-RKHFDMPHDIVASEDGTVYIGDAHTN--- 313 (329)
T ss_dssp TTTCEEEEEEET-TEEEEEECCCCTTCSCCCCEEEEETTTCCEEEEECCS-SSCCSSEEEEEECTTSEEEEEESSSC---
T ss_pred cCCCcceeeecC-CEEEEeCCCEEeccCCCcEEEEEEcCCCeEEEEEcCC-CCccCCeeEEEECCCCCEEEEECCCC---
Confidence 111122334444 44676666422 223457999998888766543210 0111222333332 578999886543
Q ss_pred cCeEEEEECCC
Q 005043 324 HAETLIFDILK 334 (717)
Q Consensus 324 ~~dv~~yD~~t 334 (717)
.|++|++..
T Consensus 314 --~I~~~~~~~ 322 (329)
T 3fvz_A 314 --TVWKFTLTE 322 (329)
T ss_dssp --CEEEEEEEE
T ss_pred --EEEEEeCCc
Confidence 488887643
No 211
>3hrp_A Uncharacterized protein; NP_812590.1, structural genomics protein of unknown function structural genomics; HET: MSE; 1.70A {Bacteroides thetaiotaomicron vpi-5482}
Probab=92.41 E-value=13 Score=39.69 Aligned_cols=201 Identities=14% Similarity=0.119 Sum_probs=105.9
Q ss_pred CCEEEEEcccCCCCCcccEEEEEcCCCceEEccccccCCCCCCCCCCCcccceEEEEE--CCEEEEEeccCCCCCCceEE
Q 005043 98 GNKMIVVGGESGNGLLDDVQVLNFDRFSWTAASSKLYLSPSSLPLKIPACRGHSLISW--GKKVLLVGGKTDSGSDRVSV 175 (717)
Q Consensus 98 ~~~lyV~GG~~~~~~~~~v~~yd~~t~~W~~l~~~~~~~~~~~~~~~p~r~~hs~v~~--~~~Iyv~GG~~~~~~~~~~v 175 (717)
++.||+.... ...+.+||+.++.-..+... . ...+ ++.. ++.+|+...... ..+
T Consensus 141 ~g~lyv~d~~-----~~~I~~id~~~g~~~~~~~~---------~----~~~~-ia~~~~g~~l~~~d~~~~-----~~I 196 (409)
T 3hrp_A 141 NNTVLAYQRD-----DPRVRLISVDDNKVTTVHPG---------F----KGGK-PAVTKDKQRVYSIGWEGT-----HTV 196 (409)
T ss_dssp TTEEEEEETT-----TTEEEEEETTTTEEEEEEET---------C----CBCB-CEECTTSSEEEEEBSSTT-----CEE
T ss_pred CCCEEEEecC-----CCcEEEEECCCCEEEEeecc---------C----CCCc-eeEecCCCcEEEEecCCC-----ceE
Confidence 5779988652 23689999998766555431 0 1112 2222 456776643211 169
Q ss_pred EEEECCCCc-EEEeeecCCCCCCceeeEEEEE--CCEEEEEccccCCCCCcCcEEEEEcCCCceEeccCCCCCCCCCcc-
Q 005043 176 WTFDTETEC-WSVVEAKGDIPVARSGHTVVRA--SSVLILFGGEDGKRRKLNDLHMFDLKSLTWLPLHCTGTGPSPRSN- 251 (717)
Q Consensus 176 ~~yD~~t~~-W~~l~~~g~~P~~R~~hs~~~~--~~~Lyv~GG~~~~~~~~~~v~~yD~~t~~W~~l~~~g~~P~~R~~- 251 (717)
++||+.+.. ...+.... .+.....+.+++. ++.||+..+ ...+++||+.+.....+...+........
T Consensus 197 ~~~d~~~~~~~~~~g~~~-~~~~~~p~~iav~p~~g~lyv~d~-------~~~I~~~d~~~~~~~~~~~~~~~g~~~~~P 268 (409)
T 3hrp_A 197 YVYMKASGWAPTRIGQLG-STFSGKIGAVALDETEEWLYFVDS-------NKNFGRFNVKTQEVTLIKQLELSGSLGTNP 268 (409)
T ss_dssp EEEEGGGTTCEEEEEECC-TTSCSCCCBCEECTTSSEEEEECT-------TCEEEEEETTTCCEEEEEECCCCSCCCCSS
T ss_pred EEEEcCCCceeEEeeecc-chhcCCcEEEEEeCCCCeEEEEEC-------CCcEEEEECCCCCEEEEecccccCCCCCCc
Confidence 999987543 23331100 1012222344443 578998421 24699999988775544211111111222
Q ss_pred -cEEEEEC-CcEEEEEcCCCCCCCCCeEEEEECCCCcEEEeecCCCCCC--------C--CcceEEEEE-CCEEEEEec-
Q 005043 252 -HVAALYD-DKNLLIFGGSSKSKTLNDLYSLDFETMIWTRIKIRGFHPS--------P--RAGCCGVLC-GTKWYIAGG- 317 (717)
Q Consensus 252 -~aa~~~~-~~~lyV~GG~~~~~~~ndv~~yd~~t~~W~~v~~~g~~P~--------~--R~~~sav~~-~~~IyV~GG- 317 (717)
..+++.. ++.||+.... .+.|++|+++.. ...+...+..+. . ..-.++++. ++.|||...
T Consensus 269 ~~~ia~~p~~g~lyv~d~~-----~~~I~~~~~~g~-~~~~~g~~~~~g~~dg~~~~~~~~~P~gia~d~dG~lyvad~~ 342 (409)
T 3hrp_A 269 GPYLIYYFVDSNFYMSDQN-----LSSVYKITPDGE-CEWFCGSATQKTVQDGLREEALFAQPNGMTVDEDGNFYIVDGF 342 (409)
T ss_dssp CCEEEEETTTTEEEEEETT-----TTEEEEECTTCC-EEEEEECTTCCSCBCEEGGGCBCSSEEEEEECTTCCEEEEETT
T ss_pred cccEEEeCCCCEEEEEeCC-----CCEEEEEecCCC-EEEEEeCCCCCCcCCCcccccEeCCCeEEEEeCCCCEEEEeCC
Confidence 1455554 4568887543 346999998765 333322110000 0 111233333 567999865
Q ss_pred CCCCCccCeEEEEECCCCcEEEee
Q 005043 318 GSRKKRHAETLIFDILKGEWSVAI 341 (717)
Q Consensus 318 ~~~~~~~~dv~~yD~~t~~W~~l~ 341 (717)
.+ ..|.++|+.+.....+.
T Consensus 343 ~~-----~~I~~~~~~~G~v~~~~ 361 (409)
T 3hrp_A 343 KG-----YCLRKLDILDGYVSTVA 361 (409)
T ss_dssp TT-----CEEEEEETTTTEEEEEE
T ss_pred CC-----CEEEEEECCCCEEEEEe
Confidence 33 35899997777766654
No 212
>2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme}
Probab=92.38 E-value=9.4 Score=41.88 Aligned_cols=147 Identities=7% Similarity=0.022 Sum_probs=73.9
Q ss_pred CCEEEEEeccCCCCCCceEEEEEECCCCcEEEeeecCCCCCCceeeEEEE-ECCEEEEEccccCCCCCcCcEEEEEcCCC
Q 005043 156 GKKVLLVGGKTDSGSDRVSVWTFDTETECWSVVEAKGDIPVARSGHTVVR-ASSVLILFGGEDGKRRKLNDLHMFDLKSL 234 (717)
Q Consensus 156 ~~~Iyv~GG~~~~~~~~~~v~~yD~~t~~W~~l~~~g~~P~~R~~hs~~~-~~~~Lyv~GG~~~~~~~~~~v~~yD~~t~ 234 (717)
+++.++.|+.+ ..+.+||.....-..+.. ..... .+++. -++.+++.|+.+ ..+.+||....
T Consensus 396 dg~~l~~~~~d------~~v~~~~~~~~~~~~~~~----~~~~v-~~~~~s~d~~~l~~~~~d------~~v~~w~~~~~ 458 (577)
T 2ymu_A 396 DGQTIASASDD------KTVKLWNRNGQLLQTLTG----HSSSV-WGVAFSPDDQTIASASDD------KTVKLWNRNGQ 458 (577)
T ss_dssp TSSCEEEEETT------SEEEEECTTCCEEEEEEC----CSSCE-EEEEECTTSSEEEEEETT------SEEEEEETTSC
T ss_pred CCCEEEEEeCC------CEEEEEeCCCCEEEEecC----CCCCe-EEEEECCCCCEEEEEcCC------CEEEEEECCCC
Confidence 55666777653 257788865544333331 11111 12222 246677776644 34778887654
Q ss_pred ceEeccCCCCCCCCCcccEEEEECCcEEEEEcCCCCCCCCCeEEEEECCCCcEEEeecCCCCCCCCcceEEEE-ECCEEE
Q 005043 235 TWLPLHCTGTGPSPRSNHVAALYDDKNLLIFGGSSKSKTLNDLYSLDFETMIWTRIKIRGFHPSPRAGCCGVL-CGTKWY 313 (717)
Q Consensus 235 ~W~~l~~~g~~P~~R~~~aa~~~~~~~lyV~GG~~~~~~~ndv~~yd~~t~~W~~v~~~g~~P~~R~~~sav~-~~~~Iy 313 (717)
.-..+. . ....-.+++...+..+++.|+.++ .|.+||.....-..+... ... -.+++. -+++++
T Consensus 459 ~~~~~~---~--~~~~v~~~~~spd~~~las~~~d~-----~i~iw~~~~~~~~~~~~h----~~~-v~~l~~s~dg~~l 523 (577)
T 2ymu_A 459 LLQTLT---G--HSSSVRGVAFSPDGQTIASASDDK-----TVKLWNRNGQLLQTLTGH----SSS-VRGVAFSPDGQTI 523 (577)
T ss_dssp EEEEEE---C--CSSCEEEEEECTTSCEEEEEETTS-----EEEEEETTSCEEEEEECC----SSC-EEEEEECTTSSCE
T ss_pred EEEEEc---C--CCCCEEEEEEcCCCCEEEEEeCCC-----EEEEEcCCCCEEEEEeCC----CCC-EEEEEEcCCCCEE
Confidence 444332 1 111122334444443677776543 488888755443333221 111 112222 267777
Q ss_pred EEecCCCCCccCeEEEEECCCCcEEE
Q 005043 314 IAGGGSRKKRHAETLIFDILKGEWSV 339 (717)
Q Consensus 314 V~GG~~~~~~~~dv~~yD~~t~~W~~ 339 (717)
+.|+.++ .|.+||........
T Consensus 524 ~s~~~dg-----~v~lwd~~~~~~~~ 544 (577)
T 2ymu_A 524 ASASDDK-----TVKLWNRNGQLLQT 544 (577)
T ss_dssp EEEETTS-----EEEEECTTSCEEEE
T ss_pred EEEECcC-----EEEEEeCCCCEEEE
Confidence 7777653 48888876544443
No 213
>4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a
Probab=92.34 E-value=10 Score=38.05 Aligned_cols=189 Identities=8% Similarity=0.080 Sum_probs=92.5
Q ss_pred CCEEEEEeccCCCCCCceEEEEEECCCCcEEEeeecCCCCCCceeeEEEEECCEEEEEccccCCCCCcCcEEEEEcCCCc
Q 005043 156 GKKVLLVGGKTDSGSDRVSVWTFDTETECWSVVEAKGDIPVARSGHTVVRASSVLILFGGEDGKRRKLNDLHMFDLKSLT 235 (717)
Q Consensus 156 ~~~Iyv~GG~~~~~~~~~~v~~yD~~t~~W~~l~~~g~~P~~R~~hs~~~~~~~Lyv~GG~~~~~~~~~~v~~yD~~t~~ 235 (717)
++.+++.|+.+. .+..++........... ..............+..++.|+.++ .+..||.....
T Consensus 97 dg~~l~s~~~d~------~i~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~l~s~s~d~------~~~~~d~~~~~ 161 (340)
T 4aow_A 97 DGQFALSGSWDG------TLRLWDLTTGTTTRRFV---GHTKDVLSVAFSSDNRQIVSGSRDK------TIKLWNTLGVC 161 (340)
T ss_dssp TSSEEEEEETTS------EEEEEETTTTEEEEEEE---CCSSCEEEEEECTTSSCEEEEETTS------CEEEECTTSCE
T ss_pred CCCEEEEEcccc------cceEEeecccceeeeec---CCCCceeEEEEeecCccceeecCCC------eEEEEEeCCCc
Confidence 566777777642 57888888776555442 1222222222223456666666543 36677775543
Q ss_pred eEeccCCCCCCCCCcccEEEEE--CCcEEEEEcCCCCCCCCCeEEEEECCCCcEEEeecCCCCCCCCcceEEEEE-CCEE
Q 005043 236 WLPLHCTGTGPSPRSNHVAALY--DDKNLLIFGGSSKSKTLNDLYSLDFETMIWTRIKIRGFHPSPRAGCCGVLC-GTKW 312 (717)
Q Consensus 236 W~~l~~~g~~P~~R~~~aa~~~--~~~~lyV~GG~~~~~~~ndv~~yd~~t~~W~~v~~~g~~P~~R~~~sav~~-~~~I 312 (717)
-...... ............ ....+++.|+.+. .+..||+.+......... ....-.+++.. ++++
T Consensus 162 ~~~~~~~---~~~~~v~~~~~~~~~~~~~~~s~~~d~-----~i~i~d~~~~~~~~~~~~----h~~~v~~~~~s~~~~~ 229 (340)
T 4aow_A 162 KYTVQDE---SHSEWVSCVRFSPNSSNPIIVSCGWDK-----LVKVWNLANCKLKTNHIG----HTGYLNTVTVSPDGSL 229 (340)
T ss_dssp EEEECSS---SCSSCEEEEEECSCSSSCEEEEEETTS-----CEEEEETTTTEEEEEECC----CSSCEEEEEECTTSSE
T ss_pred eEEEEec---cccCcccceEEccCCCCcEEEEEcCCC-----EEEEEECCCCceeeEecC----CCCcEEEEEECCCCCE
Confidence 2222211 111111111221 2223566666543 488999987765443221 11111222222 5778
Q ss_pred EEEecCCCCCccCeEEEEECCCCcEEEeecCCCCCCCCCcceEEEEEEeCCCcEEEEEcCCCCCCCCeEEEEEccCCc
Q 005043 313 YIAGGGSRKKRHAETLIFDILKGEWSVAITSPSSSVTSNKGFTLVLVQHKEKDFLVAFGGIKKEPSNQVEVLSIEKNE 390 (717)
Q Consensus 313 yV~GG~~~~~~~~dv~~yD~~t~~W~~l~~~p~~~~~~r~g~s~v~v~~~~~~~I~v~GG~~~~~~n~v~vyd~~~~e 390 (717)
++.|+.++ .+.+||+.+..-..... .. .....+.+.. ++. ++.||.+ ..+.+||+....
T Consensus 230 l~s~s~Dg-----~i~iwd~~~~~~~~~~~--~~-----~~v~~~~~~~--~~~-~~~~~~d----~~i~iwd~~~~~ 288 (340)
T 4aow_A 230 CASGGKDG-----QAMLWDLNEGKHLYTLD--GG-----DIINALCFSP--NRY-WLCAATG----PSIKIWDLEGKI 288 (340)
T ss_dssp EEEEETTC-----EEEEEETTTTEEEEEEE--CS-----SCEEEEEECS--SSS-EEEEEET----TEEEEEETTTTE
T ss_pred EEEEeCCC-----eEEEEEeccCceeeeec--CC-----ceEEeeecCC--CCc-eeeccCC----CEEEEEECCCCe
Confidence 88888654 48899988765433221 11 1223333322 233 3445532 267888876543
No 214
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus}
Probab=92.25 E-value=0.043 Score=67.06 Aligned_cols=56 Identities=29% Similarity=0.375 Sum_probs=38.6
Q ss_pred HHHHHHHHHHHHhhhhhhhhhhcccccccccCCccchhhHHHHHHHHHHHHHHhhhhccc
Q 005043 620 SLKEMELLKEKLAGLELAQEEANSLSNIVHSDNVRLEHDVAFLKAVLDDTQKELHSTRGV 679 (717)
Q Consensus 620 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 679 (717)
..+|++.||+.++.+|.+++|.+++.+-| ..||.|++=|+.-++.++||+......
T Consensus 958 ~~~e~~~L~~~l~~le~~~~e~~~~~~~v----~~L~~e~~~l~~~~~~~~ke~~~lee~ 1013 (1080)
T 2dfs_A 958 YSTETEKLRSDVERLRMSEEEAKNATNRV----LSLQEEIAKLRKELHQTQTEKKTIEEW 1013 (1080)
T ss_dssp HHHHHHHHHHTHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34667778888888887777766655443 357777777777777777777766443
No 215
>1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1
Probab=92.19 E-value=11 Score=39.55 Aligned_cols=153 Identities=14% Similarity=0.180 Sum_probs=77.5
Q ss_pred CCEEEEEccccCCCCCcCcEEEEEcCCCceEeccCCCCCCCCCcccEEEEECCcEEEEEcCCCCCCCCCeEEEEECCCCc
Q 005043 207 SSVLILFGGEDGKRRKLNDLHMFDLKSLTWLPLHCTGTGPSPRSNHVAALYDDKNLLIFGGSSKSKTLNDLYSLDFETMI 286 (717)
Q Consensus 207 ~~~Lyv~GG~~~~~~~~~~v~~yD~~t~~W~~l~~~g~~P~~R~~~aa~~~~~~~lyV~GG~~~~~~~ndv~~yd~~t~~ 286 (717)
++++++.|+.++ .+.+||+.+.+-...- .+ ....-.+++...+...++.|+.+ ..+.+||+.+..
T Consensus 134 dg~~l~s~~~d~------~i~iwd~~~~~~~~~~-~~---h~~~v~~~~~~p~~~~l~s~s~d-----~~v~iwd~~~~~ 198 (393)
T 1erj_A 134 DGKFLATGAEDR------LIRIWDIENRKIVMIL-QG---HEQDIYSLDYFPSGDKLVSGSGD-----RTVRIWDLRTGQ 198 (393)
T ss_dssp TSSEEEEEETTS------CEEEEETTTTEEEEEE-CC---CSSCEEEEEECTTSSEEEEEETT-----SEEEEEETTTTE
T ss_pred CCCEEEEEcCCC------eEEEEECCCCcEEEEE-cc---CCCCEEEEEEcCCCCEEEEecCC-----CcEEEEECCCCe
Confidence 467777777543 4888999877643321 01 11112233344333356667654 358999998876
Q ss_pred EEEeecCCCCCCCCcceEEEEE--CCEEEEEecCCCCCccCeEEEEECCCCcEEEeecCCCCCCCC-CcceEEEEEEeCC
Q 005043 287 WTRIKIRGFHPSPRAGCCGVLC--GTKWYIAGGGSRKKRHAETLIFDILKGEWSVAITSPSSSVTS-NKGFTLVLVQHKE 363 (717)
Q Consensus 287 W~~v~~~g~~P~~R~~~sav~~--~~~IyV~GG~~~~~~~~dv~~yD~~t~~W~~l~~~p~~~~~~-r~g~s~v~v~~~~ 363 (717)
....... .....+++.. ++++++.|+.++. +.+||+.+..-......+...... ......+.+. .
T Consensus 199 ~~~~~~~-----~~~v~~~~~~~~~~~~l~~~s~d~~-----v~iwd~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~--~ 266 (393)
T 1erj_A 199 CSLTLSI-----EDGVTTVAVSPGDGKYIAAGSLDRA-----VRVWDSETGFLVERLDSENESGTGHKDSVYSVVFT--R 266 (393)
T ss_dssp EEEEEEC-----SSCEEEEEECSTTCCEEEEEETTSC-----EEEEETTTCCEEEEEC------CCCSSCEEEEEEC--T
T ss_pred eEEEEEc-----CCCcEEEEEECCCCCEEEEEcCCCc-----EEEEECCCCcEEEeecccccCCCCCCCCEEEEEEC--C
Confidence 5443221 1111222222 5778888886654 889999876543322111010001 1112233332 2
Q ss_pred CcEEEEEcCCCCCCCCeEEEEEccCCc
Q 005043 364 KDFLVAFGGIKKEPSNQVEVLSIEKNE 390 (717)
Q Consensus 364 ~~~I~v~GG~~~~~~n~v~vyd~~~~e 390 (717)
++.+++.|+.++ .|.+||+....
T Consensus 267 ~g~~l~s~s~d~----~v~~wd~~~~~ 289 (393)
T 1erj_A 267 DGQSVVSGSLDR----SVKLWNLQNAN 289 (393)
T ss_dssp TSSEEEEEETTS----EEEEEEC----
T ss_pred CCCEEEEEeCCC----EEEEEECCCCC
Confidence 444566777543 57888876543
No 216
>1pex_A Collagenase-3, MMP-13; C-terminal hemopexin-like domain of matrix- metalloproteinase, metalloprotease; 2.70A {Homo sapiens} SCOP: b.66.1.1
Probab=92.16 E-value=9.1 Score=37.32 Aligned_cols=153 Identities=13% Similarity=0.166 Sum_probs=83.3
Q ss_pred EEEEECCEEEEEeccCCCCCCceEEEEEECCCCcEEEeeec---CCCCCCceeeEEEEE--CCEEEEEccccCCCCCcCc
Q 005043 151 SLISWGKKVLLVGGKTDSGSDRVSVWTFDTETECWSVVEAK---GDIPVARSGHTVVRA--SSVLILFGGEDGKRRKLND 225 (717)
Q Consensus 151 s~v~~~~~Iyv~GG~~~~~~~~~~v~~yD~~t~~W~~l~~~---g~~P~~R~~hs~~~~--~~~Lyv~GG~~~~~~~~~~ 225 (717)
+++..++.+|+|=|. .+|+++.....+...... ..+|.. .. ++... ++++|+|-| +.
T Consensus 28 Ai~~~~g~~y~Fkg~--------~~wr~~~~~~~~~p~~I~~~wp~Lp~~-iD-Aa~~~~~~~~iyfFkG--------~~ 89 (207)
T 1pex_A 28 AITSLRGETMIFKDR--------FFWRLHPQQVDAELFLTKSFWPELPNR-ID-AAYEHPSHDLIFIFRG--------RK 89 (207)
T ss_dssp EEEEETTEEEEEETT--------EEEEECSSSSCCEEEEHHHHCTTSCSS-CC-EEEEETTTTEEEEEET--------TE
T ss_pred EEEeCCCcEEEEECC--------EEEEEeCCCcCCCceehhHhccCCCCC-cc-EEEEeccCCcEEEEcc--------CE
Confidence 455679999999764 489988655444322211 134432 22 23333 589999965 44
Q ss_pred EEEEEcCCCce---EeccCCCCCCCC--CcccEEEEE-CCcEEEEEcCCCCCCCCCeEEEEECCCCcEE-----Eeec-C
Q 005043 226 LHMFDLKSLTW---LPLHCTGTGPSP--RSNHVAALY-DDKNLLIFGGSSKSKTLNDLYSLDFETMIWT-----RIKI-R 293 (717)
Q Consensus 226 v~~yD~~t~~W---~~l~~~g~~P~~--R~~~aa~~~-~~~~lyV~GG~~~~~~~ndv~~yd~~t~~W~-----~v~~-~ 293 (717)
+|+|+-.+..- ..+...| +|.. ... +|... ++..+|+|-| +..|+||..+++-. .+.. -
T Consensus 90 ~w~~~~~~~~~gyPk~I~~~G-lP~~~~~ID-AA~~~~~~gk~yfFkG-------~~ywr~d~~~~~~d~gyPr~i~~~~ 160 (207)
T 1pex_A 90 FWALNGYDILEGYPKKISELG-LPKEVKKIS-AAVHFEDTGKTLLFSG-------NQVWRYDDTNHIMDKDYPRLIEEDF 160 (207)
T ss_dssp EEEESTTCCCTTCSEESTTTT-CCTTCCCCC-EEEECTTTSEEEEEET-------TEEEEEETTTTEECSSCCCBHHHHS
T ss_pred EEEEeCCeeccCCceeccccC-CCCCCcccc-EEEEeCCCCEEEEEeC-------CEEEEEeCcCccccCCCCccHHHcC
Confidence 67776432111 1222112 3321 233 23333 3345888877 36899998765311 0000 0
Q ss_pred CCCCCCCcceEEEEECCEEEEEecCCCCCccCeEEEEECCCCcEEE
Q 005043 294 GFHPSPRAGCCGVLCGTKWYIAGGGSRKKRHAETLIFDILKGEWSV 339 (717)
Q Consensus 294 g~~P~~R~~~sav~~~~~IyV~GG~~~~~~~~dv~~yD~~t~~W~~ 339 (717)
+.. +..-.++...++++|+|-| +..|.||..+.+-..
T Consensus 161 ~Gi--p~~iDaAf~~~g~~YfFkg-------~~y~rf~~~~~~v~~ 197 (207)
T 1pex_A 161 PGI--GDKVDAVYEKNGYIYFFNG-------PIQFEYSIWSNRIVR 197 (207)
T ss_dssp TTS--CSCCSEEEEETTEEEEEET-------TEEEEEETTTTEEEE
T ss_pred CCC--CCCccEEEEcCCcEEEEEC-------CEEEEEeCCccEEec
Confidence 011 2223344556999999988 468999998766443
No 217
>2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A {Staphylococcus aureus} SCOP: b.68.6.1 PDB: 2dg0_A 2dso_A
Probab=92.04 E-value=2.2 Score=43.43 Aligned_cols=155 Identities=7% Similarity=-0.053 Sum_probs=84.0
Q ss_pred CCEEEEEeccCCCCCCceEEEEEECCCCcEEEeeecCCCCCCceeeEEEEE-CCEEEEEccccCCCCCcCcEEEEEcCCC
Q 005043 156 GKKVLLVGGKTDSGSDRVSVWTFDTETECWSVVEAKGDIPVARSGHTVVRA-SSVLILFGGEDGKRRKLNDLHMFDLKSL 234 (717)
Q Consensus 156 ~~~Iyv~GG~~~~~~~~~~v~~yD~~t~~W~~l~~~g~~P~~R~~hs~~~~-~~~Lyv~GG~~~~~~~~~~v~~yD~~t~ 234 (717)
++.||+.+... ..+++||+.++++..+.. +....-++++.. ++.+|+.+..+.. ....+++||+.+.
T Consensus 55 ~g~l~~~~~~~------~~i~~~d~~~~~~~~~~~----~~~~~~~~i~~~~dg~l~v~~~~~~~--~~~~i~~~d~~~~ 122 (333)
T 2dg1_A 55 QGQLFLLDVFE------GNIFKINPETKEIKRPFV----SHKANPAAIKIHKDGRLFVCYLGDFK--STGGIFAATENGD 122 (333)
T ss_dssp TSCEEEEETTT------CEEEEECTTTCCEEEEEE----CSSSSEEEEEECTTSCEEEEECTTSS--SCCEEEEECTTSC
T ss_pred CCCEEEEECCC------CEEEEEeCCCCcEEEEee----CCCCCcceEEECCCCcEEEEeCCCCC--CCceEEEEeCCCC
Confidence 56788876542 369999999988876642 111223344443 5688887533211 2257999999887
Q ss_pred ceEeccCCCCCCCCCcccEEEEECCcEEEEEcCCC-CCCCCCeEEEEECCCCcEEEeecCCCCCCCCcceEEEEE-CC-E
Q 005043 235 TWLPLHCTGTGPSPRSNHVAALYDDKNLLIFGGSS-KSKTLNDLYSLDFETMIWTRIKIRGFHPSPRAGCCGVLC-GT-K 311 (717)
Q Consensus 235 ~W~~l~~~g~~P~~R~~~aa~~~~~~~lyV~GG~~-~~~~~ndv~~yd~~t~~W~~v~~~g~~P~~R~~~sav~~-~~-~ 311 (717)
....+.. .......-..++...+..+|+..... .......+++||+++.....+.... ....+.+.. ++ .
T Consensus 123 ~~~~~~~--~~~~~~~~~~i~~d~~g~l~v~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~-----~~~~~i~~~~dg~~ 195 (333)
T 2dg1_A 123 NLQDIIE--DLSTAYCIDDMVFDSKGGFYFTDFRGYSTNPLGGVYYVSPDFRTVTPIIQNI-----SVANGIALSTDEKV 195 (333)
T ss_dssp SCEEEEC--SSSSCCCEEEEEECTTSCEEEEECCCBTTBCCEEEEEECTTSCCEEEEEEEE-----SSEEEEEECTTSSE
T ss_pred EEEEEEc--cCccCCcccceEECCCCCEEEEeccccccCCCceEEEEeCCCCEEEEeecCC-----CcccceEECCCCCE
Confidence 7653311 11111222233333344477754321 1112346999999887776653210 111233332 33 5
Q ss_pred EEEEecCCCCCccCeEEEEECCC
Q 005043 312 WYIAGGGSRKKRHAETLIFDILK 334 (717)
Q Consensus 312 IyV~GG~~~~~~~~dv~~yD~~t 334 (717)
+|+..... ..+++||+.+
T Consensus 196 l~v~~~~~-----~~i~~~d~~~ 213 (333)
T 2dg1_A 196 LWVTETTA-----NRLHRIALED 213 (333)
T ss_dssp EEEEEGGG-----TEEEEEEECT
T ss_pred EEEEeCCC-----CeEEEEEecC
Confidence 88775432 4689999854
No 218
>1ic2_A Tropomyosin alpha chain, skeletal muscle; alpha-helical coiled coil, alanine, symmetry, axial stagger, BEND, contractIle protein; 2.00A {Gallus gallus} SCOP: h.1.5.1
Probab=92.03 E-value=0.95 Score=37.46 Aligned_cols=70 Identities=20% Similarity=0.168 Sum_probs=51.0
Q ss_pred HHHHHHHHHHHhcchhHHHHHHHhhHHHHHhhhhhHHhhHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhh
Q 005043 571 YESKMAALIRKNGILEGQLAAALVNREAAEKNFSSVLKSRQEMEKKLADSLKEMELLKEKLAGLELAQEE 640 (717)
Q Consensus 571 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 640 (717)
.+.||+++.........++..+-+..+++|+....+-.....+.+|+..+..+++...|+|..+...-|+
T Consensus 4 ikkKm~~lk~e~d~a~~~~~~~e~~l~~~e~~~~~~E~ev~~L~kKiq~lE~eld~~ee~l~~a~~kLee 73 (81)
T 1ic2_A 4 IKKKMQMLKLDKENALDRAEQAEADKKAAEERSKQLEDELVALQKKLKGTEDELDKYSESLKDAQEKLEL 73 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4678888887777777777777777777777777777777777777777777777777776665544443
No 219
>1flg_A Protein (quinoprotein ethanol dehydrogenase); superbarrel, oxidoreductase; HET: PQQ; 2.60A {Pseudomonas aeruginosa} SCOP: b.70.1.1
Probab=91.87 E-value=19 Score=40.66 Aligned_cols=121 Identities=13% Similarity=0.143 Sum_probs=66.1
Q ss_pred EEEECCEEEEEeccCCCCCCceEEEEEECCCCc--EEEeeecCCCCCCc---eeeEEEEECCEEEEEccccCCCCCcCcE
Q 005043 152 LISWGKKVLLVGGKTDSGSDRVSVWTFDTETEC--WSVVEAKGDIPVAR---SGHTVVRASSVLILFGGEDGKRRKLNDL 226 (717)
Q Consensus 152 ~v~~~~~Iyv~GG~~~~~~~~~~v~~yD~~t~~--W~~l~~~g~~P~~R---~~hs~~~~~~~Lyv~GG~~~~~~~~~~v 226 (717)
.++.++.||+.+... .++.+|..|++ |+.-........+. ...+.++.+++||+... -..+
T Consensus 64 P~v~~g~vyv~~~~~-------~v~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~~g~a~~~~~v~~~t~-------dg~l 129 (582)
T 1flg_A 64 AIVSDGVIYVTASYS-------RLFALDAKTGKRLWTYNHRLPDDIRPCCDVVNRGAAIYGDKVFFGTL-------DASV 129 (582)
T ss_dssp CEEETTEEEEEETTT-------EEEEEESSSCCEEEEEECCCCTTCCCSSCSCCCCCEEETTEEEEEET-------TTEE
T ss_pred cEEECCEEEEEcCCC-------CEEEEECCCCcEEEEEcCCCCcccccccccCCCccEEECCEEEEEeC-------CCEE
Confidence 356799999986631 39999998765 98754211100001 11234567888888521 2468
Q ss_pred EEEEcCCCc--eEeccCCCCCCCC-CcccEEEEECC----c-EEEEEcCCCC-CCCCCeEEEEECCCCc--EEE
Q 005043 227 HMFDLKSLT--WLPLHCTGTGPSP-RSNHVAALYDD----K-NLLIFGGSSK-SKTLNDLYSLDFETMI--WTR 289 (717)
Q Consensus 227 ~~yD~~t~~--W~~l~~~g~~P~~-R~~~aa~~~~~----~-~lyV~GG~~~-~~~~ndv~~yd~~t~~--W~~ 289 (717)
+.+|..+.+ |+.-.. ..... ....+-++.++ + .+|+ |.... ......++.||+.+++ |+.
T Consensus 130 ~AlD~~TG~~~W~~~~~--~~~~~~~~~~sP~v~~~~~~G~~~v~v-g~~~~e~~~~g~v~alD~~tG~~~W~~ 200 (582)
T 1flg_A 130 VALNKNTGKVVWKKKFA--DHGAGYTMTGAPTIVKDGKTGKVLLIH-GSSGDEFGVVGRLFARDPDTGEEIWMR 200 (582)
T ss_dssp EEEESSSCCEEEEEECS--CGGGTCBCCSCCEEEECTTTCCEEEEE-CCBCGGGCCBCEEEEECTTTCCEEEEE
T ss_pred EEEECCCCCEEeeecCC--CCCcCcccccCCEEeCCCcCCcEEEEE-eccccccCCCCEEEEEECCCCCEEeec
Confidence 999998775 875421 10000 01112233444 2 2444 43211 1224579999998765 864
No 220
>2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme}
Probab=91.83 E-value=17 Score=39.70 Aligned_cols=182 Identities=7% Similarity=0.018 Sum_probs=89.7
Q ss_pred CCEEEEEeccCCCCCCceEEEEEECCCCcEEEeeecCCCCCCceeeEEEE-ECCEEEEEccccCCCCCcCcEEEEEcCCC
Q 005043 156 GKKVLLVGGKTDSGSDRVSVWTFDTETECWSVVEAKGDIPVARSGHTVVR-ASSVLILFGGEDGKRRKLNDLHMFDLKSL 234 (717)
Q Consensus 156 ~~~Iyv~GG~~~~~~~~~~v~~yD~~t~~W~~l~~~g~~P~~R~~hs~~~-~~~~Lyv~GG~~~~~~~~~~v~~yD~~t~ 234 (717)
++..++.|+.+ ..+.+||........+.. .. ... .++++ -+++.++.|+.+ ..+.+||....
T Consensus 355 ~g~~l~~~~~d------g~v~~~~~~~~~~~~~~~---~~-~~v-~~~~~s~dg~~l~~~~~d------~~v~~~~~~~~ 417 (577)
T 2ymu_A 355 DGQTIASASDD------KTVKLWNRNGQLLQTLTG---HS-SSV-RGVAFSPDGQTIASASDD------KTVKLWNRNGQ 417 (577)
T ss_dssp TSSEEEEEETT------SEEEEEETTCCEEEEEEC---CS-SCE-EEEEECTTSSCEEEEETT------SEEEEECTTCC
T ss_pred CCCEEEEEeCC------CEEEEEcCCCCEEEEecC---CC-CCe-EEEEECCCCCEEEEEeCC------CEEEEEeCCCC
Confidence 56666777653 257788876555444432 11 111 12222 245666776644 34777886543
Q ss_pred ceEeccCCCCCCCCCcccEEEEECCcEEEEEcCCCCCCCCCeEEEEECCCCcEEEeecCCCCCCCCcceEEEE-ECCEEE
Q 005043 235 TWLPLHCTGTGPSPRSNHVAALYDDKNLLIFGGSSKSKTLNDLYSLDFETMIWTRIKIRGFHPSPRAGCCGVL-CGTKWY 313 (717)
Q Consensus 235 ~W~~l~~~g~~P~~R~~~aa~~~~~~~lyV~GG~~~~~~~ndv~~yd~~t~~W~~v~~~g~~P~~R~~~sav~-~~~~Iy 313 (717)
.-..+. .. ... -.+++...+..+++.|+.++ .+..||.....-..+... ...-.+++. -+++++
T Consensus 418 ~~~~~~---~~-~~~-v~~~~~s~d~~~l~~~~~d~-----~v~~w~~~~~~~~~~~~~-----~~~v~~~~~spd~~~l 482 (577)
T 2ymu_A 418 LLQTLT---GH-SSS-VWGVAFSPDDQTIASASDDK-----TVKLWNRNGQLLQTLTGH-----SSSVRGVAFSPDGQTI 482 (577)
T ss_dssp EEEEEE---CC-SSC-EEEEEECTTSSEEEEEETTS-----EEEEEETTSCEEEEEECC-----SSCEEEEEECTTSCEE
T ss_pred EEEEec---CC-CCC-eEEEEECCCCCEEEEEcCCC-----EEEEEECCCCEEEEEcCC-----CCCEEEEEEcCCCCEE
Confidence 333332 11 111 12233333333666666543 488889766555444321 111222222 267888
Q ss_pred EEecCCCCCccCeEEEEECCCCcEEEeecCCCCCCCCCcceEEEEEEeCCCcEEEEEcCCCCCCCCeEEEEEcc
Q 005043 314 IAGGGSRKKRHAETLIFDILKGEWSVAITSPSSSVTSNKGFTLVLVQHKEKDFLVAFGGIKKEPSNQVEVLSIE 387 (717)
Q Consensus 314 V~GG~~~~~~~~dv~~yD~~t~~W~~l~~~p~~~~~~r~g~s~v~v~~~~~~~I~v~GG~~~~~~n~v~vyd~~ 387 (717)
+.|+.++ .+.+||.....-..+.. . ......+.+.. ++.+++.||.++ .|.+||..
T Consensus 483 as~~~d~-----~i~iw~~~~~~~~~~~~---h----~~~v~~l~~s~--dg~~l~s~~~dg----~v~lwd~~ 538 (577)
T 2ymu_A 483 ASASDDK-----TVKLWNRNGQLLQTLTG---H----SSSVRGVAFSP--DGQTIASASDDK----TVKLWNRN 538 (577)
T ss_dssp EEEETTS-----EEEEEETTSCEEEEEEC---C----SSCEEEEEECT--TSSCEEEEETTS----EEEEECTT
T ss_pred EEEeCCC-----EEEEEcCCCCEEEEEeC---C----CCCEEEEEEcC--CCCEEEEEECcC----EEEEEeCC
Confidence 8887553 47888875544333321 1 11123333432 344566676543 57777753
No 221
>4h5i_A Guanine nucleotide-exchange factor SEC12; copii vesicle budding, potassium binding site, beta propelle protein transport; 1.36A {Saccharomyces cerevisiae} PDB: 4h5j_A
Probab=91.77 E-value=14 Score=38.56 Aligned_cols=182 Identities=8% Similarity=-0.033 Sum_probs=91.6
Q ss_pred cEEEEEcCCCceEEccccccCCCCCCCCCCCcccceEEEE-ECCEEEEEeccCCCCCCceEEEEEECCCCcEEEeeecCC
Q 005043 115 DVQVLNFDRFSWTAASSKLYLSPSSLPLKIPACRGHSLIS-WGKKVLLVGGKTDSGSDRVSVWTFDTETECWSVVEAKGD 193 (717)
Q Consensus 115 ~v~~yd~~t~~W~~l~~~~~~~~~~~~~~~p~r~~hs~v~-~~~~Iyv~GG~~~~~~~~~~v~~yD~~t~~W~~l~~~g~ 193 (717)
.+.++|+.+......... ... -.+++. -++++++.|+.+ .+.+++..++........ .
T Consensus 158 ~i~iwd~~~~~~~~~~~~------------~~~-V~~v~fspdg~~l~s~s~~-------~~~~~~~~~~~~~~~~~~-~ 216 (365)
T 4h5i_A 158 IMRIIDPSDLTEKFEIET------------RGE-VKDLHFSTDGKVVAYITGS-------SLEVISTVTGSCIARKTD-F 216 (365)
T ss_dssp EEEEEETTTTEEEEEEEC------------SSC-CCEEEECTTSSEEEEECSS-------CEEEEETTTCCEEEEECC-C
T ss_pred EEEEeECCCCcEEEEeCC------------CCc-eEEEEEccCCceEEeccce-------eEEEEEeccCcceeeeec-C
Confidence 588899988754433211 011 122222 256666666521 467778777765443320 0
Q ss_pred CCCCceeeEEEEECCEEEEEccccCCCCCcCcEEEEEcCCCceEeccCCCCCC-CCCcccEEEEECCcEEEEEcCCCCCC
Q 005043 194 IPVARSGHTVVRASSVLILFGGEDGKRRKLNDLHMFDLKSLTWLPLHCTGTGP-SPRSNHVAALYDDKNLLIFGGSSKSK 272 (717)
Q Consensus 194 ~P~~R~~hs~~~~~~~Lyv~GG~~~~~~~~~~v~~yD~~t~~W~~l~~~g~~P-~~R~~~aa~~~~~~~lyV~GG~~~~~ 272 (717)
............-++..++.++.+... ...++.+|.....+...... .+. ....-.+++...+..+++.|+.++
T Consensus 217 ~~~~~v~~v~fspdg~~l~~~s~d~~~--~~~i~~~~~~~~~~~~~~~~-~~~~~~~~V~~~~~Spdg~~lasgs~D~-- 291 (365)
T 4h5i_A 217 DKNWSLSKINFIADDTVLIAASLKKGK--GIVLTKISIKSGNTSVLRSK-QVTNRFKGITSMDVDMKGELAVLASNDN-- 291 (365)
T ss_dssp CTTEEEEEEEEEETTEEEEEEEESSSC--CEEEEEEEEETTEEEEEEEE-EEESSCSCEEEEEECTTSCEEEEEETTS--
T ss_pred CCCCCEEEEEEcCCCCEEEEEecCCcc--eeEEeecccccceecceeee-eecCCCCCeEeEEECCCCCceEEEcCCC--
Confidence 111111222223467888887766542 23567777766655432110 011 111112333444444778887764
Q ss_pred CCCeEEEEECCCCcEEEeecCCCCCCCCcceEEEEE--CCEEEEEecCCCCCccCeEEEEECCC
Q 005043 273 TLNDLYSLDFETMIWTRIKIRGFHPSPRAGCCGVLC--GTKWYIAGGGSRKKRHAETLIFDILK 334 (717)
Q Consensus 273 ~~ndv~~yd~~t~~W~~v~~~g~~P~~R~~~sav~~--~~~IyV~GG~~~~~~~~dv~~yD~~t 334 (717)
.|.+||..+..-......+ -.....++.+ ++++++.|+.++ .|.++|+..
T Consensus 292 ---~V~iwd~~~~~~~~~~~~g----H~~~V~~v~fSpdg~~laS~S~D~-----tvrvw~ip~ 343 (365)
T 4h5i_A 292 ---SIALVKLKDLSMSKIFKQA----HSFAITEVTISPDSTYVASVSAAN-----TIHIIKLPL 343 (365)
T ss_dssp ---CEEEEETTTTEEEEEETTS----SSSCEEEEEECTTSCEEEEEETTS-----EEEEEECCT
T ss_pred ---EEEEEECCCCcEEEEecCc----ccCCEEEEEECCCCCEEEEEeCCC-----eEEEEEcCC
Confidence 4999999876533211110 1111223333 788888888664 477888643
No 222
>3ott_A Two-component system sensor histidine kinase; beta-propeller, beta-sandwich, transcription; HET: TBR; 2.30A {Bacteroides thetaiotaomicron} PDB: 3va6_A
Probab=91.77 E-value=23 Score=40.97 Aligned_cols=190 Identities=9% Similarity=0.044 Sum_probs=102.8
Q ss_pred CCEEEEEcccCCCCCcccEEEEEcCCCceEEccccccCCCCCCCCCCCcccceEEEEECCEEEEEeccCCCCCCceEEEE
Q 005043 98 GNKMIVVGGESGNGLLDDVQVLNFDRFSWTAASSKLYLSPSSLPLKIPACRGHSLISWGKKVLLVGGKTDSGSDRVSVWT 177 (717)
Q Consensus 98 ~~~lyV~GG~~~~~~~~~v~~yd~~t~~W~~l~~~~~~~~~~~~~~~p~r~~hs~v~~~~~Iyv~GG~~~~~~~~~~v~~ 177 (717)
++.|||... +.+++||+.+..+..... . .+. .-.+++..++.|+|... ..+++
T Consensus 73 ~g~lWigT~-------~Gl~~yd~~~~~f~~~~~----------~-~~~-~i~~i~~~~g~lWigt~--------~Gl~~ 125 (758)
T 3ott_A 73 NTYLYMGTD-------NGILVYNYRADRYEQPET----------D-FPT-DVRTMALQGDTLWLGAL--------NGLYT 125 (758)
T ss_dssp TTEEEEEET-------TEEEEEETTTTEECCCSC----------C-CCS-CEEEEEEETTEEEEEET--------TEEEE
T ss_pred CCcEEEEeC-------CCeEEEeCCCCEEECccc----------C-CCc-eEEEEEecCCcEEEEcC--------Cccee
Confidence 567887541 247999999987754111 0 111 11233445788887422 14899
Q ss_pred EECCCCcEEEeeec-CCCCCCceeeEEEEE-CCEEEEEccccCCCCCcCcEEEEEcCCCceEeccCCCCCC-CCCcccEE
Q 005043 178 FDTETECWSVVEAK-GDIPVARSGHTVVRA-SSVLILFGGEDGKRRKLNDLHMFDLKSLTWLPLHCTGTGP-SPRSNHVA 254 (717)
Q Consensus 178 yD~~t~~W~~l~~~-g~~P~~R~~hs~~~~-~~~Lyv~GG~~~~~~~~~~v~~yD~~t~~W~~l~~~g~~P-~~R~~~aa 254 (717)
||+.++++...... ..++... -.+++.. ++.|||.. .+.+++||+.+.++.......... ....-.++
T Consensus 126 ~~~~~~~~~~~~~~~~~l~~~~-i~~i~~d~~g~lWigt--------~~Gl~~~~~~~~~~~~~~~~~~~~~~~~~i~~i 196 (758)
T 3ott_A 126 YQLQSRKLTSFDTRRNGLPNNT-IYSIIRTKDNQIYVGT--------YNGLCRYIPSNGKFEGIPLPVHSSQSNLFVNSL 196 (758)
T ss_dssp EETTTCCEEEECHHHHCCSCSC-EEEEEECTTCCEEEEE--------TTEEEEEETTTTEEEEECCCCCTTCSSCCEEEE
T ss_pred EeCCCCeEEEeccCCCCcCCCe-EEEEEEcCCCCEEEEe--------CCCHhhCccCCCceEEecCCCccccccceeEEE
Confidence 99999988876311 1233222 2233333 57888841 134889999988887653111100 01111222
Q ss_pred EEEC-CcEEEEEcCCCCCCCCCeEEEEECCCCcEEEeecCCCCCCCCcceEEEEE-CCEEEEEecCCCCCccCeEEEEEC
Q 005043 255 ALYD-DKNLLIFGGSSKSKTLNDLYSLDFETMIWTRIKIRGFHPSPRAGCCGVLC-GTKWYIAGGGSRKKRHAETLIFDI 332 (717)
Q Consensus 255 ~~~~-~~~lyV~GG~~~~~~~ndv~~yd~~t~~W~~v~~~g~~P~~R~~~sav~~-~~~IyV~GG~~~~~~~~dv~~yD~ 332 (717)
.... +..|+| |-. ..+++||+.+..+...... +. ..-.+++.. ++.|+|... .-+++||+
T Consensus 197 ~~d~~~~~lWi-gt~------~Gl~~~~~~~~~~~~~~~l---~~-~~i~~i~~d~~g~lWigT~-------~Gl~~~~~ 258 (758)
T 3ott_A 197 LEDTTRQCVWI-GTE------GYLFQYFPSTGQIKQTEAF---HN-NSIKSLALDGNGDLLAGTD-------NGLYVYHN 258 (758)
T ss_dssp EEETTTTEEEE-EEE------EEEEEEETTTTEEEEEEEE---EE-EEEEEEEECTTCCEEEEET-------TEEEEECC
T ss_pred EEECCCCEEEE-EEC------CCCeEEcCCCCeEEeccCC---CC-CeEEEEEEcCCCCEEEEeC-------CceeEEec
Confidence 2222 344566 321 2489999999988766432 11 111222222 466666431 23889999
Q ss_pred CCCcEEEee
Q 005043 333 LKGEWSVAI 341 (717)
Q Consensus 333 ~t~~W~~l~ 341 (717)
.+..+..+.
T Consensus 259 ~~~~~~~~~ 267 (758)
T 3ott_A 259 DTTPLQHII 267 (758)
T ss_dssp TTSCCEEEC
T ss_pred CCCcEEEEE
Confidence 888877654
No 223
>1qhu_A Protein (hemopexin); beta propeller, HAEM binding and transport, iron metabolism, binding protein; HET: HEM; 2.30A {Oryctolagus cuniculus} SCOP: b.66.1.1 b.66.1.1 PDB: 1qjs_A*
Probab=91.59 E-value=12 Score=41.21 Aligned_cols=101 Identities=18% Similarity=0.284 Sum_probs=55.2
Q ss_pred CCEEEEEeccCCCCCCceEEEEEECCCCc--E-EEeeec-CCCCCCceeeEEEE-----ECCEEEEEccccCCCCCcCcE
Q 005043 156 GKKVLLVGGKTDSGSDRVSVWTFDTETEC--W-SVVEAK-GDIPVARSGHTVVR-----ASSVLILFGGEDGKRRKLNDL 226 (717)
Q Consensus 156 ~~~Iyv~GG~~~~~~~~~~v~~yD~~t~~--W-~~l~~~-g~~P~~R~~hs~~~-----~~~~Lyv~GG~~~~~~~~~~v 226 (717)
++++|+|=|. .+|+|+-..-. + ..+... ..+|. ....+... .++++|+|-| +..
T Consensus 107 ~g~~yfFkG~--------~yW~~~~~~~~~GYPk~I~~~fpGlp~-~IDAA~~~~~~~~~~~~~yfFkG--------~~y 169 (460)
T 1qhu_A 107 HTSVYLIKGD--------KVWVYTSEKNEKVYPKSLQDEFPGIPF-PLDAAVECHRGECQDEGILFFQG--------NRK 169 (460)
T ss_dssp TTEEEEEETT--------EEEEECC-------CEEHHHHSTTCCS-SCCEEEEECBBTBSSSEEEEEET--------TEE
T ss_pred CCcEEEEecc--------EEEEEeCCcccCCCCeEhhhccCCCCC-CeeEEEECCccCCCCCeEEEEec--------ccE
Confidence 5899999774 58998643210 0 011100 12443 22222221 2678898865 457
Q ss_pred EEEEcCCCceEeccCCCCCCCCCcccEEEEECCcEEEEEcCCCCCCCCCeEEEEECCCC
Q 005043 227 HMFDLKSLTWLPLHCTGTGPSPRSNHVAALYDDKNLLIFGGSSKSKTLNDLYSLDFETM 285 (717)
Q Consensus 227 ~~yD~~t~~W~~l~~~g~~P~~R~~~aa~~~~~~~lyV~GG~~~~~~~ndv~~yd~~t~ 285 (717)
|+||..+.+...-.-. .+| .. -++....++ +|+|-|. ..|+||..+.
T Consensus 170 w~yd~~~~~~~~~~w~-gi~--~i-DAA~~~~g~-~YfFkG~-------~y~rfd~~~~ 216 (460)
T 1qhu_A 170 WFWDLTTGTKKERSWP-AVG--NC-TSALRWLGR-YYCFQGN-------QFLRFNPVSG 216 (460)
T ss_dssp EEEETTTTEEEEECCT-TSC--CC-SEEEEETTE-EEEEETT-------EEEEECTTTC
T ss_pred EEEecccceeecccCC-CCC--cc-chheeeCCc-eEEEECC-------EEEEEcCccC
Confidence 9999987765432211 223 22 344455665 8999884 5788887553
No 224
>3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens}
Probab=91.58 E-value=6.8 Score=39.60 Aligned_cols=194 Identities=10% Similarity=0.076 Sum_probs=95.7
Q ss_pred CEEEEEeccCCCCCCceEEEEEECCCCcEEEeeecCCCCCCceeeEEEEEC----CEEEEEccccCCCCCcCcEEEEEcC
Q 005043 157 KKVLLVGGKTDSGSDRVSVWTFDTETECWSVVEAKGDIPVARSGHTVVRAS----SVLILFGGEDGKRRKLNDLHMFDLK 232 (717)
Q Consensus 157 ~~Iyv~GG~~~~~~~~~~v~~yD~~t~~W~~l~~~g~~P~~R~~hs~~~~~----~~Lyv~GG~~~~~~~~~~v~~yD~~ 232 (717)
..+++.|+... ....+.+||..++....... ......-.+++... +.+++.|+.++ .+.+||..
T Consensus 31 ~~l~~~~s~~~---~d~~v~iw~~~~~~~~~~~~---~~~~~~v~~~~~~~~~~~~~~l~~~~~dg------~i~iwd~~ 98 (357)
T 3i2n_A 31 AKFVTMGNFAR---GTGVIQLYEIQHGDLKLLRE---IEKAKPIKCGTFGATSLQQRYLATGDFGG------NLHIWNLE 98 (357)
T ss_dssp SEEEEEEC--C---CCEEEEEEEECSSSEEEEEE---EEESSCEEEEECTTCCTTTCCEEEEETTS------CEEEECTT
T ss_pred ceEEEecCccC---CCcEEEEEeCCCCcccceee---ecccCcEEEEEEcCCCCCCceEEEecCCC------eEEEEeCC
Confidence 35666665411 12368889988887654432 11111222333322 47777776543 48888887
Q ss_pred CCc--eEeccCCCCCCCCCcccEEEE-------ECCcEEEEEcCCCCCCCCCeEEEEECCCCc--EEEeecCCCCCCCCc
Q 005043 233 SLT--WLPLHCTGTGPSPRSNHVAAL-------YDDKNLLIFGGSSKSKTLNDLYSLDFETMI--WTRIKIRGFHPSPRA 301 (717)
Q Consensus 233 t~~--W~~l~~~g~~P~~R~~~aa~~-------~~~~~lyV~GG~~~~~~~ndv~~yd~~t~~--W~~v~~~g~~P~~R~ 301 (717)
+.. ...+. ... ..-.++.. -++. +++.|+.++ .+.+||+.+.. ...+..... ...+.
T Consensus 99 ~~~~~~~~~~---~~~--~~v~~~~~~~~~~~s~~~~-~l~~~~~d~-----~i~vwd~~~~~~~~~~~~~~~~-~~~~~ 166 (357)
T 3i2n_A 99 APEMPVYSVK---GHK--EIINAIDGIGGLGIGEGAP-EIVTGSRDG-----TVKVWDPRQKDDPVANMEPVQG-ENKRD 166 (357)
T ss_dssp SCSSCSEEEC---CCS--SCEEEEEEESGGGCC-CCC-EEEEEETTS-----CEEEECTTSCSSCSEEECCCTT-SCCCC
T ss_pred CCCccEEEEE---ecc--cceEEEeeccccccCCCcc-EEEEEeCCC-----eEEEEeCCCCCCcceeccccCC-CCCCc
Confidence 664 22221 111 11111211 1344 667776653 48999987754 333322100 11122
Q ss_pred ceEEEE-----ECCEEEEEecCCCCCccCeEEEEECCCCcEEEeecCCCCCCCCCcceEEEEEEeCC-CcEEEEEcCCCC
Q 005043 302 GCCGVL-----CGTKWYIAGGGSRKKRHAETLIFDILKGEWSVAITSPSSSVTSNKGFTLVLVQHKE-KDFLVAFGGIKK 375 (717)
Q Consensus 302 ~~sav~-----~~~~IyV~GG~~~~~~~~dv~~yD~~t~~W~~l~~~p~~~~~~r~g~s~v~v~~~~-~~~I~v~GG~~~ 375 (717)
..+++. .++.+++.|+.++ .+.+||+.+..-...... ......+.+...+ ++..++.|+.++
T Consensus 167 v~~~~~~~~~~~~~~~l~~~~~d~-----~i~i~d~~~~~~~~~~~~-------~~~v~~~~~~~~~~~~~~l~~~~~dg 234 (357)
T 3i2n_A 167 CWTVAFGNAYNQEERVVCAGYDNG-----DIKLFDLRNMALRWETNI-------KNGVCSLEFDRKDISMNKLVATSLEG 234 (357)
T ss_dssp EEEEEEECCCC-CCCEEEEEETTS-----EEEEEETTTTEEEEEEEC-------SSCEEEEEESCSSSSCCEEEEEESTT
T ss_pred eEEEEEEeccCCCCCEEEEEccCC-----eEEEEECccCceeeecCC-------CCceEEEEcCCCCCCCCEEEEECCCC
Confidence 223221 3677777777543 589999988765433211 1123333343210 234556665432
Q ss_pred CCCCeEEEEEccCCc
Q 005043 376 EPSNQVEVLSIEKNE 390 (717)
Q Consensus 376 ~~~n~v~vyd~~~~e 390 (717)
.+.+||+.+.+
T Consensus 235 ----~i~i~d~~~~~ 245 (357)
T 3i2n_A 235 ----KFHVFDMRTQH 245 (357)
T ss_dssp ----EEEEEEEEEEE
T ss_pred ----eEEEEeCcCCC
Confidence 67888877654
No 225
>2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B
Probab=91.56 E-value=2.4 Score=45.41 Aligned_cols=146 Identities=10% Similarity=0.053 Sum_probs=71.3
Q ss_pred EEEEccccCCCCCcCcEEEEEcCCC---ceEeccCCCCCCCCCcccEEEEEC-CcEEEEEcCCCCCCCCCeEEEEECCCC
Q 005043 210 LILFGGEDGKRRKLNDLHMFDLKSL---TWLPLHCTGTGPSPRSNHVAALYD-DKNLLIFGGSSKSKTLNDLYSLDFETM 285 (717)
Q Consensus 210 Lyv~GG~~~~~~~~~~v~~yD~~t~---~W~~l~~~g~~P~~R~~~aa~~~~-~~~lyV~GG~~~~~~~ndv~~yd~~t~ 285 (717)
+++.|+.++ .+.+||+.+. .+..............-.+++... +..+++.|+.+ ..|.+||+.+.
T Consensus 196 ~l~s~~~dg------~i~vwd~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~l~s~~~d-----g~i~i~d~~~~ 264 (430)
T 2xyi_A 196 YLLSASDDH------TICLWDINATPKEHRVIDAKNIFTGHTAVVEDVAWHLLHESLFGSVADD-----QKLMIWDTRNN 264 (430)
T ss_dssp EEEEECTTS------CEEEEETTSCCBGGGEEECSEEECCCSSCEEEEEECSSCTTEEEEEETT-----SEEEEEETTCS
T ss_pred eEEEEeCCC------eEEEEeCCCCCCCCceeccceeecCCCCCEeeeEEeCCCCCEEEEEeCC-----CeEEEEECCCC
Confidence 677776543 4888898762 222100000001111222333333 33367777654 35999999765
Q ss_pred c----EEEeecCCCCCCCCcceEEEEE---CCEEEEEecCCCCCccCeEEEEECCCCc--EEEeecCCCCCCCCCcceEE
Q 005043 286 I----WTRIKIRGFHPSPRAGCCGVLC---GTKWYIAGGGSRKKRHAETLIFDILKGE--WSVAITSPSSSVTSNKGFTL 356 (717)
Q Consensus 286 ~----W~~v~~~g~~P~~R~~~sav~~---~~~IyV~GG~~~~~~~~dv~~yD~~t~~--W~~l~~~p~~~~~~r~g~s~ 356 (717)
. -..+.. ......++.+ +..+++.|+.++ .|.+||+.+.. -..+. ........
T Consensus 265 ~~~~~~~~~~~------~~~~v~~i~~~p~~~~~l~tg~~dg-----~v~vwd~~~~~~~~~~~~-------~h~~~v~~ 326 (430)
T 2xyi_A 265 NTSKPSHTVDA------HTAEVNCLSFNPYSEFILATGSADK-----TVALWDLRNLKLKLHSFE-------SHKDEIFQ 326 (430)
T ss_dssp CSSSCSEEEEC------CSSCEEEEEECSSCTTEEEEEETTS-----EEEEEETTCTTSCSEEEE-------CCSSCEEE
T ss_pred CCCcceeEeec------CCCCeEEEEeCCCCCCEEEEEeCCC-----eEEEEeCCCCCCCeEEee-------cCCCCEEE
Confidence 2 111111 1112223333 334888888654 48899987632 11111 01112233
Q ss_pred EEEEeCCCcEEEEEcCCCCCCCCeEEEEEccCC
Q 005043 357 VLVQHKEKDFLVAFGGIKKEPSNQVEVLSIEKN 389 (717)
Q Consensus 357 v~v~~~~~~~I~v~GG~~~~~~n~v~vyd~~~~ 389 (717)
+.+. +.+..+++.||.++ .|.+||+...
T Consensus 327 i~~s-p~~~~~l~s~~~d~----~i~iwd~~~~ 354 (430)
T 2xyi_A 327 VQWS-PHNETILASSGTDR----RLHVWDLSKI 354 (430)
T ss_dssp EEEC-SSCTTEEEEEETTS----CCEEEEGGGT
T ss_pred EEEC-CCCCCEEEEEeCCC----cEEEEeCCCC
Confidence 3332 23445777777643 5788888763
No 226
>3b7f_A Glycosyl hydrolase, BNR repeat; 7-bladed beta-propeller fold, structural genomics, joint CEN structural genomics, JCSG; 2.20A {Ralstonia eutropha}
Probab=91.56 E-value=16 Score=38.63 Aligned_cols=234 Identities=14% Similarity=0.116 Sum_probs=119.0
Q ss_pred CCeEEeeecCCCCCCcceeEEEEE---CCEEEEEcccCCCCCcccEEEEEcCCCceEEccccccCCCCCCCCCCCc----
Q 005043 74 ENWMVLSIAGDKPIPRFNHAAAVI---GNKMIVVGGESGNGLLDDVQVLNFDRFSWTAASSKLYLSPSSLPLKIPA---- 146 (717)
Q Consensus 74 ~~W~~l~~~g~~P~~R~~haav~~---~~~lyV~GG~~~~~~~~~v~~yd~~t~~W~~l~~~~~~~~~~~~~~~p~---- 146 (717)
..|..+.. .+....-++.++. .+.||+.+..... -..+++.+-...+|+.+..... .+ ..+.
T Consensus 43 ~~W~~~~~---~~~~~~v~~i~~dp~~~~~l~~g~~~g~~--g~gl~~s~D~G~tW~~~~~~~~-----~~-~~~~~~~~ 111 (394)
T 3b7f_A 43 RTWELRGP---VFLGHTIHHIVQDPREPERMLMAARTGHL--GPTVFRSDDGGGNWTEATRPPA-----FN-KAPEGETG 111 (394)
T ss_dssp CSEEEEEE---ESTTSEEEEEEECSSSTTCEEEEEEC--C--CEEEEEESSTTSCCEECSBCCC-----CC-CCC----C
T ss_pred CCceECCc---cCCCCceEEEEECCCCCCeEEEEecCCCC--CccEEEeCCCCCCceECCcccc-----CC-Cccccccc
Confidence 57998741 1222233344443 4668876542111 1247777767789998864200 00 0010
Q ss_pred -c--cceEEEEE----CCEEEEEeccCCCCCCceEEEEEECCCCcEEEeeecCCCC--------------CCceeeEEEE
Q 005043 147 -C--RGHSLISW----GKKVLLVGGKTDSGSDRVSVWTFDTETECWSVVEAKGDIP--------------VARSGHTVVR 205 (717)
Q Consensus 147 -r--~~hs~v~~----~~~Iyv~GG~~~~~~~~~~v~~yD~~t~~W~~l~~~g~~P--------------~~R~~hs~~~ 205 (717)
. .-.+++.. .+.||+.+.. .-+++.+-...+|+.+......| .....+++++
T Consensus 112 ~~~~~i~~l~~~~~~~~~~l~~g~~~-------ggl~~S~DgG~tW~~~~~~~~~p~~~~~~~~~~~g~~~~~~i~~i~~ 184 (394)
T 3b7f_A 112 RVVDHVFWLTPGHASEPGTWYAGTSP-------QGLFRSTDHGASWEPVAGFNDHPMRRAWTGGEQDGTPDGPKMHSILV 184 (394)
T ss_dssp CCCCEEEEEEECCTTSTTCEEEEEET-------TEEEEESSTTSBCEECHHHHTCTTHHHHHCCC----CCCCEEEEEEE
T ss_pred ccccceeEEEeCCCCCCCEEEEEecC-------CcEEEEcCCCCCeEECcCccCCccccccccccccCCCCCCceeEEEE
Confidence 0 11233333 4667765421 24888888888999875311112 1122344444
Q ss_pred E---CCEEEEEccccCCCCCcCcEEEEEcCCCceEeccCC---CCCCCC-----CcccEEEEECC--cEEEEEcCCCCCC
Q 005043 206 A---SSVLILFGGEDGKRRKLNDLHMFDLKSLTWLPLHCT---GTGPSP-----RSNHVAALYDD--KNLLIFGGSSKSK 272 (717)
Q Consensus 206 ~---~~~Lyv~GG~~~~~~~~~~v~~yD~~t~~W~~l~~~---g~~P~~-----R~~~aa~~~~~--~~lyV~GG~~~~~ 272 (717)
. .+.||+..+. ..+++.+-...+|+.+... ..+|.+ ...+.++.... ..||+..+
T Consensus 185 d~~~~~~l~vg~~~-------ggl~~s~DgG~tW~~~~~~~~~~~~p~~~~~~g~~~~~i~~~~~~~~~l~vg~~----- 252 (394)
T 3b7f_A 185 DPRDPKHLYIGMSS-------GGVFESTDAGTDWKPLNRGCAANFLPDPNVEFGHDPHCVVQHPAAPDILYQQNH----- 252 (394)
T ss_dssp CTTCTTCEEEEEET-------BEEEEESSTTSSCEECCTTCCCTTSSSSSSSSCBCEEEEEECSSSTTEEEEEET-----
T ss_pred CCCCCCEEEEEECC-------CCEEEECCCCCCceECCCCccccccCCCccccCcceeEEEECCCCCCEEEEEcC-----
Confidence 3 2567775431 2478887778899987521 112221 22344444432 44666321
Q ss_pred CCCeEEEEECCCCcEEEeecCCCCCCC--CcceEEEEE---CCEEEEEecCCCC-------CccCeEEEEECCCCcEEEe
Q 005043 273 TLNDLYSLDFETMIWTRIKIRGFHPSP--RAGCCGVLC---GTKWYIAGGGSRK-------KRHAETLIFDILKGEWSVA 340 (717)
Q Consensus 273 ~~ndv~~yd~~t~~W~~v~~~g~~P~~--R~~~sav~~---~~~IyV~GG~~~~-------~~~~dv~~yD~~t~~W~~l 340 (717)
..+++.+....+|+.+... .|.. ....+++.. .+.||+....... .....+++-.-...+|+.+
T Consensus 253 --~gl~~s~D~G~tW~~~~~~--l~~~~~~~~~~i~~~p~~~~~l~~~t~~~~~~w~~~~~~~~~~~~~S~DgG~tW~~~ 328 (394)
T 3b7f_A 253 --CGIYRMDRREGVWKRIGDA--MPREVGDIGFPIVVHQRDPRTVWVFPMDGSDVWPRVSPGGKPAVYVTRDAGESWQRQ 328 (394)
T ss_dssp --TEEEEEETTTTEEECGGGG--SCTTTCSCEEEEEECSSCTTCEEEEECBCCSSTTCCBCCSSCCEEEESSTTSCCEEE
T ss_pred --CeEEEeCCCCCcceECCCC--CCCCCccceEEEEECCCCCCEEEEEeccCCccceeecCCCceeEEEECCCCCCceEC
Confidence 3489999889999998641 2321 233444442 4678876411110 1112344433334789997
Q ss_pred e
Q 005043 341 I 341 (717)
Q Consensus 341 ~ 341 (717)
.
T Consensus 329 ~ 329 (394)
T 3b7f_A 329 D 329 (394)
T ss_dssp C
T ss_pred C
Confidence 5
No 227
>2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R
Probab=91.47 E-value=14 Score=37.84 Aligned_cols=145 Identities=13% Similarity=0.066 Sum_probs=69.1
Q ss_pred CCEEEEEeccCCCCCCceEEEEEECCCCcEEEeeecCCCCCCceeeEEEEE-CCEEEEEccccCCCCCcCcEEEEEcCCC
Q 005043 156 GKKVLLVGGKTDSGSDRVSVWTFDTETECWSVVEAKGDIPVARSGHTVVRA-SSVLILFGGEDGKRRKLNDLHMFDLKSL 234 (717)
Q Consensus 156 ~~~Iyv~GG~~~~~~~~~~v~~yD~~t~~W~~l~~~g~~P~~R~~hs~~~~-~~~Lyv~GG~~~~~~~~~~v~~yD~~t~ 234 (717)
++.+++.|+.+ ..+.+||+.+.+....-. .....-.+++.. ++..++.||.++ .+.+||+...
T Consensus 87 ~~~~l~s~s~D------~~v~lwd~~~~~~~~~~~----~h~~~v~~v~~sp~~~~l~s~~~d~------~i~~wd~~~~ 150 (343)
T 2xzm_R 87 ENCFAISSSWD------KTLRLWDLRTGTTYKRFV----GHQSEVYSVAFSPDNRQILSAGAER------EIKLWNILGE 150 (343)
T ss_dssp STTEEEEEETT------SEEEEEETTSSCEEEEEE----CCCSCEEEEEECSSTTEEEEEETTS------CEEEEESSSC
T ss_pred CCCEEEEEcCC------CcEEEEECCCCcEEEEEc----CCCCcEEEEEECCCCCEEEEEcCCC------EEEEEeccCC
Confidence 45666777753 268899998876432211 111112223332 456667777543 4778887643
Q ss_pred ceEeccCCCCCCCCCcccEEEEE-CC----------cEEEEEcCCCCCCCCCeEEEEECCCCcEEEeecCCCCCCCCcce
Q 005043 235 TWLPLHCTGTGPSPRSNHVAALY-DD----------KNLLIFGGSSKSKTLNDLYSLDFETMIWTRIKIRGFHPSPRAGC 303 (717)
Q Consensus 235 ~W~~l~~~g~~P~~R~~~aa~~~-~~----------~~lyV~GG~~~~~~~ndv~~yd~~t~~W~~v~~~g~~P~~R~~~ 303 (717)
.-.... ..........++.+ .. ..+++.|+.++ .+..||.....-..+.. ....-.
T Consensus 151 ~~~~~~---~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~l~s~~~d~-----~i~iwd~~~~~~~~~~~-----h~~~v~ 217 (343)
T 2xzm_R 151 CKFSSA---EKENHSDWVSCVRYSPIMKSANKVQPFAPYFASVGWDG-----RLKVWNTNFQIRYTFKA-----HESNVN 217 (343)
T ss_dssp EEEECC---TTTSCSSCEEEEEECCCCCSCSCCCSSCCEEEEEETTS-----EEEEEETTTEEEEEEEC-----CSSCEE
T ss_pred ceeeee---cccCCCceeeeeeeccccccccccCCCCCEEEEEcCCC-----EEEEEcCCCceeEEEcC-----ccccce
Confidence 322221 11111111112222 11 12566676653 58888854322112211 111112
Q ss_pred EEEE-ECCEEEEEecCCCCCccCeEEEEECCC
Q 005043 304 CGVL-CGTKWYIAGGGSRKKRHAETLIFDILK 334 (717)
Q Consensus 304 sav~-~~~~IyV~GG~~~~~~~~dv~~yD~~t 334 (717)
+++. -+++.++.|+.++ .+.+||+..
T Consensus 218 ~~~~s~~g~~l~sgs~dg-----~v~iwd~~~ 244 (343)
T 2xzm_R 218 HLSISPNGKYIATGGKDK-----KLLIWDILN 244 (343)
T ss_dssp EEEECTTSSEEEEEETTC-----EEEEEESSC
T ss_pred EEEECCCCCEEEEEcCCC-----eEEEEECCC
Confidence 2222 2677888887654 488899843
No 228
>2p4o_A Hypothetical protein; putative lactonase, structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.90A {Nostoc punctiforme} SCOP: b.68.6.3
Probab=91.28 E-value=14 Score=37.47 Aligned_cols=216 Identities=9% Similarity=0.013 Sum_probs=110.4
Q ss_pred CCCeEEeeecCCCCCCcceeEEEEE-CCEEEEEcccCCCCCcccEEEEEcCCCceEEccccccCCCCCCCCCCCcccceE
Q 005043 73 SENWMVLSIAGDKPIPRFNHAAAVI-GNKMIVVGGESGNGLLDDVQVLNFDRFSWTAASSKLYLSPSSLPLKIPACRGHS 151 (717)
Q Consensus 73 s~~W~~l~~~g~~P~~R~~haav~~-~~~lyV~GG~~~~~~~~~v~~yd~~t~~W~~l~~~~~~~~~~~~~~~p~r~~hs 151 (717)
....+.+. ..|.+..-.+.++. ++.||+.--. ...+++||+.+. ...... .+. .-++
T Consensus 19 ~~~~~~~~---~~p~~~~pegia~~~~g~lyv~d~~-----~~~I~~~d~~g~-~~~~~~------------~~~-~p~g 76 (306)
T 2p4o_A 19 LAPAKIIT---SFPVNTFLENLASAPDGTIFVTNHE-----VGEIVSITPDGN-QQIHAT------------VEG-KVSG 76 (306)
T ss_dssp CCCEEEEE---EECTTCCEEEEEECTTSCEEEEETT-----TTEEEEECTTCC-EEEEEE------------CSS-EEEE
T ss_pred CCCceEeE---eCCCCCCcceEEECCCCCEEEEeCC-----CCeEEEECCCCc-eEEEEe------------CCC-Ccee
Confidence 34455554 34444444555543 5678888532 236899998874 222221 111 1244
Q ss_pred EEEE-CCEEEEEeccCCCCCCceEEEEEECCCCcEEEeeecCCCCCCceeeEEEEE-CCEEEEEccccCCCCCcCcEEEE
Q 005043 152 LISW-GKKVLLVGGKTDSGSDRVSVWTFDTETECWSVVEAKGDIPVARSGHTVVRA-SSVLILFGGEDGKRRKLNDLHMF 229 (717)
Q Consensus 152 ~v~~-~~~Iyv~GG~~~~~~~~~~v~~yD~~t~~W~~l~~~g~~P~~R~~hs~~~~-~~~Lyv~GG~~~~~~~~~~v~~y 229 (717)
++.. ++++|+...... ...+++||+.+++.+.+.. .+..+.....+.. ++.+|+.-- ....+|++
T Consensus 77 ia~~~dG~l~vad~~~~----~~~v~~~d~~~g~~~~~~~---~~~~~~~~g~~~~~~~~~~v~d~------~~g~i~~~ 143 (306)
T 2p4o_A 77 LAFTSNGDLVATGWNAD----SIPVVSLVKSDGTVETLLT---LPDAIFLNGITPLSDTQYLTADS------YRGAIWLI 143 (306)
T ss_dssp EEECTTSCEEEEEECTT----SCEEEEEECTTSCEEEEEE---CTTCSCEEEEEESSSSEEEEEET------TTTEEEEE
T ss_pred EEEcCCCcEEEEeccCC----cceEEEEcCCCCeEEEEEe---CCCccccCcccccCCCcEEEEEC------CCCeEEEE
Confidence 4443 567888753211 1258899998888876653 3444444444433 456777521 23579999
Q ss_pred EcCCCc---eEeccC-CCCCCCCC-cccEEEEECCcEEEEEcCCCCCCCCCeEEEEECCC-CcE---EEeecCCCCCCCC
Q 005043 230 DLKSLT---WLPLHC-TGTGPSPR-SNHVAALYDDKNLLIFGGSSKSKTLNDLYSLDFET-MIW---TRIKIRGFHPSPR 300 (717)
Q Consensus 230 D~~t~~---W~~l~~-~g~~P~~R-~~~aa~~~~~~~lyV~GG~~~~~~~ndv~~yd~~t-~~W---~~v~~~g~~P~~R 300 (717)
|+.+.. |..-.. ....+... ........+++.||+.--. .+.|++|+++. ... ..+... ..|
T Consensus 144 d~~~~~~~v~~~~~~~~~~~~~~~~~~pngis~dg~~lyv~d~~-----~~~I~~~~~~~~g~~~~~~~~~~~---~~P- 214 (306)
T 2p4o_A 144 DVVQPSGSIWLEHPMLARSNSESVFPAANGLKRFGNFLYVSNTE-----KMLLLRIPVDSTDKPGEPEIFVEQ---TNI- 214 (306)
T ss_dssp ETTTTEEEEEEECGGGSCSSTTCCSCSEEEEEEETTEEEEEETT-----TTEEEEEEBCTTSCBCCCEEEEES---CCC-
T ss_pred eCCCCcEeEEEECCccccccccCCCCcCCCcCcCCCEEEEEeCC-----CCEEEEEEeCCCCCCCccEEEecc---CCC-
Confidence 987642 211110 00011111 1111224455568876432 35799999874 221 111111 111
Q ss_pred cceEEEEE-CCEEEEEecCCCCCccCeEEEEECCCCcEEEe
Q 005043 301 AGCCGVLC-GTKWYIAGGGSRKKRHAETLIFDILKGEWSVA 340 (717)
Q Consensus 301 ~~~sav~~-~~~IyV~GG~~~~~~~~dv~~yD~~t~~W~~l 340 (717)
..+++. +++|||.-... +.|.+||+. .+...+
T Consensus 215 --~gi~vd~dG~l~va~~~~-----~~V~~~~~~-G~~~~~ 247 (306)
T 2p4o_A 215 --DDFAFDVEGNLYGATHIY-----NSVVRIAPD-RSTTII 247 (306)
T ss_dssp --SSEEEBTTCCEEEECBTT-----CCEEEECTT-CCEEEE
T ss_pred --CCeEECCCCCEEEEeCCC-----CeEEEECCC-CCEEEE
Confidence 223333 67888876533 358999986 444433
No 229
>2fp8_A Strictosidine synthase; six bladed beta propeller fold, lyase; 2.30A {Rauvolfia serpentina} PDB: 2fp9_A* 2fpc_A* 2vaq_A* 3v1s_A* 2fpb_A* 2v91_A*
Probab=91.19 E-value=13 Score=37.68 Aligned_cols=207 Identities=11% Similarity=-0.065 Sum_probs=104.0
Q ss_pred eEEEEE--CCEEEEEcccCCCCCcccEEEEEcCCCceEEccccccCCCCCCCCCCCcccceEEEEE--CCEEEEEeccCC
Q 005043 92 HAAAVI--GNKMIVVGGESGNGLLDDVQVLNFDRFSWTAASSKLYLSPSSLPLKIPACRGHSLISW--GKKVLLVGGKTD 167 (717)
Q Consensus 92 haav~~--~~~lyV~GG~~~~~~~~~v~~yd~~t~~W~~l~~~~~~~~~~~~~~~p~r~~hs~v~~--~~~Iyv~GG~~~ 167 (717)
++.++. ++.|||.... ..+++||+.+...+.+.... ...+......+++. ++.||+.-....
T Consensus 83 ~gi~~~~~~g~l~v~d~~------~~i~~~d~~~g~~~~~~~~~--------~~~~~~~p~~i~~d~~~G~l~v~d~~~~ 148 (322)
T 2fp8_A 83 YDISYNLQNNQLYIVDCY------YHLSVVGSEGGHATQLATSV--------DGVPFKWLYAVTVDQRTGIVYFTDVSTL 148 (322)
T ss_dssp EEEEEETTTTEEEEEETT------TEEEEECTTCEECEEEESEE--------TTEECSCEEEEEECTTTCCEEEEESCSS
T ss_pred ceEEEcCCCCcEEEEECC------CCEEEEeCCCCEEEEecccC--------CCCcccccceEEEecCCCEEEEECCccc
Confidence 344555 5789987432 24889998876655553310 00011112334443 467888642210
Q ss_pred C-----------CCCceEEEEEECCCCcEEEeeecCCCCCCceeeEEEEE-C-CEEEEEccccCCCCCcCcEEEEEcCCC
Q 005043 168 S-----------GSDRVSVWTFDTETECWSVVEAKGDIPVARSGHTVVRA-S-SVLILFGGEDGKRRKLNDLHMFDLKSL 234 (717)
Q Consensus 168 ~-----------~~~~~~v~~yD~~t~~W~~l~~~g~~P~~R~~hs~~~~-~-~~Lyv~GG~~~~~~~~~~v~~yD~~t~ 234 (717)
. ......+++||+.+.....+... +. ....++.. + +.||+.-. ..+.+++||+...
T Consensus 149 ~~~~~~~~~~~~~~~~g~v~~~d~~~~~~~~~~~~--~~---~p~gia~~~dg~~lyv~d~------~~~~I~~~~~~~~ 217 (322)
T 2fp8_A 149 YDDRGVQQIMDTSDKTGRLIKYDPSTKETTLLLKE--LH---VPGGAEVSADSSFVLVAEF------LSHQIVKYWLEGP 217 (322)
T ss_dssp CCTTCHHHHHHHTCCCEEEEEEETTTTEEEEEEEE--ES---CCCEEEECTTSSEEEEEEG------GGTEEEEEESSST
T ss_pred ccccccceehcccCCCceEEEEeCCCCEEEEeccC--Cc---cCcceEECCCCCEEEEEeC------CCCeEEEEECCCC
Confidence 0 11235799999988876654321 11 12234443 2 35888732 1356899998753
Q ss_pred ---ceEeccCCCCCCCCCcccEEEEECCcEEEEEcCCCCC-----CCCCeEEEEECCCCcEEEeecCCCCCCCCcceEEE
Q 005043 235 ---TWLPLHCTGTGPSPRSNHVAALYDDKNLLIFGGSSKS-----KTLNDLYSLDFETMIWTRIKIRGFHPSPRAGCCGV 306 (717)
Q Consensus 235 ---~W~~l~~~g~~P~~R~~~aa~~~~~~~lyV~GG~~~~-----~~~ndv~~yd~~t~~W~~v~~~g~~P~~R~~~sav 306 (717)
.+..+. .++.| ..+++-.+..|||....... .....+.+||++...-..+......+ .....+++
T Consensus 218 ~~~~~~~~~---~~~gP---~gi~~d~~G~l~va~~~~~~~~~~~~~~~~v~~~d~~G~~~~~~~~~~g~~-~~~~~~~~ 290 (322)
T 2fp8_A 218 KKGTAEVLV---KIPNP---GNIKRNADGHFWVSSSEELDGNMHGRVDPKGIKFDEFGNILEVIPLPPPFA-GEHFEQIQ 290 (322)
T ss_dssp TTTCEEEEE---ECSSE---EEEEECTTSCEEEEEEEETTSSTTSCEEEEEEEECTTSCEEEEEECCTTTT-TSCCCEEE
T ss_pred cCCccceEE---eCCCC---CCeEECCCCCEEEEecCcccccccCCCccEEEEECCCCCEEEEEECCCCCc-cccceEEE
Confidence 333332 12211 12333333347776432100 01245899999765555554321111 12223344
Q ss_pred EECCEEEEEecCCCCCccCeEEEEECCCC
Q 005043 307 LCGTKWYIAGGGSRKKRHAETLIFDILKG 335 (717)
Q Consensus 307 ~~~~~IyV~GG~~~~~~~~dv~~yD~~t~ 335 (717)
..+++|||.+... +.|.+|++..+
T Consensus 291 ~~~g~L~v~~~~~-----~~i~~~~~~~~ 314 (322)
T 2fp8_A 291 EHDGLLYIGTLFH-----GSVGILVYDKK 314 (322)
T ss_dssp EETTEEEEECSSC-----SEEEEEEC---
T ss_pred EeCCEEEEeecCC-----CceEEEecccc
Confidence 5689999876433 35888887543
No 230
>3u59_A Tropomyosin beta chain; muscle contraction, actin, contractIle protein; 2.50A {Gallus gallus}
Probab=91.12 E-value=1.1 Score=38.83 Aligned_cols=71 Identities=14% Similarity=0.096 Sum_probs=44.1
Q ss_pred HHHHHHHHHHHHhcchhHHHHHHHhhHHHHHhhhhhHHhhHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhh
Q 005043 570 FYESKMAALIRKNGILEGQLAAALVNREAAEKNFSSVLKSRQEMEKKLADSLKEMELLKEKLAGLELAQEE 640 (717)
Q Consensus 570 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 640 (717)
....+.-.++.+...+|+++-.+-...+++|..+.++-+-.|.++..+..+.......++||...+.+-++
T Consensus 13 ~lk~e~e~a~d~ae~~e~~~k~~e~~~~~~E~ei~sL~kKiq~lE~eld~~~e~l~~a~~kLe~~ek~~~~ 83 (101)
T 3u59_A 13 MLKLDKENAIDRAEQAEADKKQAEDRCKQLEEEQQGLQKKLKGTEDEVEKYSESVKEAQEKLEQAEKKATD 83 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33334444566666777777777777777777777766666666666666666666666665555544443
No 231
>3u1c_A Tropomyosin alpha-1 chain; anti-parallel coiled coil, contractIle protein; 1.80A {Gallus gallus} PDB: 3u1a_A
Probab=90.90 E-value=1.1 Score=38.71 Aligned_cols=67 Identities=15% Similarity=0.082 Sum_probs=44.1
Q ss_pred HHHHHHHHHHhcchhHHHHHHHhhHHHHHhhhhhHHhhHHHHHHHHHHHHHHHHHHHHHHhhhhhhh
Q 005043 572 ESKMAALIRKNGILEGQLAAALVNREAAEKNFSSVLKSRQEMEKKLADSLKEMELLKEKLAGLELAQ 638 (717)
Q Consensus 572 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 638 (717)
+.+.-.++.+.+.+|.++..+-...+++|.-+.++.+-.|.+|..|..+...+...++||...+.+-
T Consensus 15 k~e~e~a~drae~~e~~~k~~e~~~~~~E~Ei~sL~kk~~~lE~eld~~ee~L~ea~~kLee~ek~~ 81 (101)
T 3u1c_A 15 KLDKENALDRAEQAEADKKAAEERSKQLEDDIVQLEKQLRVTEDSRDQVLEELHKSEDSLLFAEENA 81 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333445666777777777777777777777777777777777766666665555555555554433
No 232
>2cn3_A Xyloglucanase, beta-1,4-xyloglucan hydrolase; glycosylhydrolase, family GH74; HET: GLC BGC GAL; 1.95A {Clostridium thermocellum} PDB: 2cn2_A*
Probab=90.60 E-value=30 Score=40.19 Aligned_cols=268 Identities=16% Similarity=0.206 Sum_probs=138.0
Q ss_pred CCCCeEEeeecCCCCCCcceeEEEEE---CCEEEEEcccCCCCCcccEEEEEcCCCceEEccccccCCCCCCCCCCC--c
Q 005043 72 NSENWMVLSIAGDKPIPRFNHAAAVI---GNKMIVVGGESGNGLLDDVQVLNFDRFSWTAASSKLYLSPSSLPLKIP--A 146 (717)
Q Consensus 72 ~s~~W~~l~~~g~~P~~R~~haav~~---~~~lyV~GG~~~~~~~~~v~~yd~~t~~W~~l~~~~~~~~~~~~~~~p--~ 146 (717)
....|+.+.. ....-.-++.++. .+.||+.. .. ..+|+.+-...+|+.+.+. .... .
T Consensus 9 ~~~~w~~~~~---~~~~g~i~~i~~~p~~~~~~~~~~-~~-----ggv~rS~D~G~tW~~i~~~---------~~~~~~~ 70 (737)
T 2cn3_A 9 VPYKWDNVVI---GGGGGFMPGIVFNETEKDLIYARA-AI-----GGAYRWDPSTETWIPLLDH---------FQMDEYS 70 (737)
T ss_dssp CCEEEEEECC---CSBCSCCCEEEECSSSTTCEEEEC-SS-----SCEEEEETTTTEEEECCTT---------CCGGGGG
T ss_pred CCCeeEEccc---CCCcceeeEEEECCCCCCEEEEEe-cC-----CcEEEeCCCCCCEEECcCc---------cCccccc
Confidence 4567999952 1112022333332 25577643 22 2589998888999997652 0000 0
Q ss_pred ccc-eEEEEE---CCEEEEEeccCC--CCCCceEEEEEECCCCcEEEeeecCC----CCCCceeeEEEEE---CCEEEEE
Q 005043 147 CRG-HSLISW---GKKVLLVGGKTD--SGSDRVSVWTFDTETECWSVVEAKGD----IPVARSGHTVVRA---SSVLILF 213 (717)
Q Consensus 147 r~~-hs~v~~---~~~Iyv~GG~~~--~~~~~~~v~~yD~~t~~W~~l~~~g~----~P~~R~~hs~~~~---~~~Lyv~ 213 (717)
... +++++. .+.||+..|... .......+++-.-.-.+|+.+..... +|.....+.+++. .+.||+.
T Consensus 71 ~~~i~~i~~dp~~~~~v~v~~~~~~~~~~~~~~~l~~S~DgG~TW~~~~~~~~~~~~~~g~~~~~~l~~~p~~~~~v~~g 150 (737)
T 2cn3_A 71 YYGVESIATDPVDPNRVYIVAGMYTNDWLPNMGAILRSTDRGETWEKTILPFKMGGNMPGRSMGERLAIDPNDNRILYLG 150 (737)
T ss_dssp GGCEEEEEECSSSTTCEEEEECSCSSSSSCCCCEEEEESSSSSSCEEEECSSCCCTTSTTTTSCCCEEECSSCTTCEEEE
T ss_pred CCCcceEEeCCCCCCEEEEEecccccccccCCccEEEeCCCCCCcccCCCCcccCCCcCcccccceEEECCCCCCEEEEe
Confidence 122 333333 367888765311 11112346666556678998864211 2221123455543 2566664
Q ss_pred ccccCCCCCcCcEEEEEcCCCceEeccCCCCCCCCC--------------cccEEEEECC---------cEEEEEcCCCC
Q 005043 214 GGEDGKRRKLNDLHMFDLKSLTWLPLHCTGTGPSPR--------------SNHVAALYDD---------KNLLIFGGSSK 270 (717)
Q Consensus 214 GG~~~~~~~~~~v~~yD~~t~~W~~l~~~g~~P~~R--------------~~~aa~~~~~---------~~lyV~GG~~~ 270 (717)
. ..+ ..+|+=+=...+|+.+. .+|... .+...+.++. ..||+.-+...
T Consensus 151 ~-~~g-----~gl~~S~DgG~tW~~~~---~~~~~~~~~~~p~~~~~~~~~g~~~v~~dp~~~~~~~~~~~v~~~~~~~~ 221 (737)
T 2cn3_A 151 T-RCG-----NGLWRSTDYGVTWSKVE---SFPNPGTYIYDPNFDYTKDIIGVVWVVFDKSSSTPGNPTKTIYVGVADKN 221 (737)
T ss_dssp C-STT-----CCEEEESSTTSSCEECT---TCCCCCCCBSCTTSTTTCSBCCEEEEEECGGGSCTTSCCSCEEEEESCSS
T ss_pred e-ccC-----CcEEEeCCCCcceeccc---CCCCCcccccCcccccccCCCCEEEEEcCCCCcccCCCCCEEEEEecCCC
Confidence 2 111 23554333456899886 233210 1122233321 13666322111
Q ss_pred CCCCCeEEEEECCCCcEEEeecCCCCCCCCcceEEEEE-CCEEEEEecCCCC----CccCeEEEEECCCCcEEEeecCCC
Q 005043 271 SKTLNDLYSLDFETMIWTRIKIRGFHPSPRAGCCGVLC-GTKWYIAGGGSRK----KRHAETLIFDILKGEWSVAITSPS 345 (717)
Q Consensus 271 ~~~~ndv~~yd~~t~~W~~v~~~g~~P~~R~~~sav~~-~~~IyV~GG~~~~----~~~~dv~~yD~~t~~W~~l~~~p~ 345 (717)
..+++=.-...+|+.+... |.....+.++.. ++.+|+..+.... .....+|+++....+|+.+...|.
T Consensus 222 ----~~v~~S~DgG~tW~~~~~~---p~~~~~~~~~~~~~~~l~~~~~d~~g~y~~~~~g~v~~s~d~G~tW~~i~~~~~ 294 (737)
T 2cn3_A 222 ----ESIYRSTDGGVTWKAVPGQ---PKGLLPHHGVLASNGMLYITYGDTCGPYDGNGKGQVWKFNTRTGEWIDITPIPY 294 (737)
T ss_dssp ----CCEEEESSTTSCCEECTTC---CCSSEEEEEEECTTSEEEEEEESSCCSSCCSCCEEEEEEETTTCCEEECCSSCT
T ss_pred ----ccEEEEcCCCCceEECCCC---CCcccceEEEECCCCeEEEEecCCCCccccccCceEEEEeCCCCCEEEccCCCC
Confidence 1255544456789998732 444443444433 6889987653211 133579999999999999875433
Q ss_pred CCCCCCcceEEEEEEeCCCcEEEEEcCC
Q 005043 346 SSVTSNKGFTLVLVQHKEKDFLVAFGGI 373 (717)
Q Consensus 346 ~~~~~r~g~s~v~v~~~~~~~I~v~GG~ 373 (717)
.....+++++.+.+...+.+.||+.+..
T Consensus 295 ~~~~~~~~~~~i~v~p~~~~~ly~~~~~ 322 (737)
T 2cn3_A 295 SSSDNRFCFAGLAVDRQNPDIIMVTSMN 322 (737)
T ss_dssp TSTTCCSEEEEEEECTTCTTCEEEEEEC
T ss_pred CCcccccccccEEEcCCCCCEEEEEecc
Confidence 2113456676666655555678877653
No 233
>3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A
Probab=90.60 E-value=3.3 Score=42.26 Aligned_cols=199 Identities=11% Similarity=0.120 Sum_probs=93.6
Q ss_pred CEEEEEcccCCCCCcccEEEEEcCCCceEEccccccCCCCCCCCCCCcccceEEEEE-C--CEEEEEeccCCCCCCceEE
Q 005043 99 NKMIVVGGESGNGLLDDVQVLNFDRFSWTAASSKLYLSPSSLPLKIPACRGHSLISW-G--KKVLLVGGKTDSGSDRVSV 175 (717)
Q Consensus 99 ~~lyV~GG~~~~~~~~~v~~yd~~t~~W~~l~~~~~~~~~~~~~~~p~r~~hs~v~~-~--~~Iyv~GG~~~~~~~~~~v 175 (717)
+.+++.|+.++ .+.+||+.+..|...... ......-.+++.. + +.+++.|+.+. .+
T Consensus 71 ~~~l~s~s~D~-----~v~iWd~~~~~~~~~~~~----------~~h~~~V~~v~~~p~~~g~~lasgs~D~------~i 129 (316)
T 3bg1_A 71 GNILASCSYDR-----KVIIWREENGTWEKSHEH----------AGHDSSVNSVCWAPHDYGLILACGSSDG------AI 129 (316)
T ss_dssp SSCEEEEETTS-----CEEEECCSSSCCCEEEEE----------CCCSSCCCEEEECCTTTCSCEEEECSSS------CE
T ss_pred CCEEEEEECCC-----EEEEEECCCCcceEEEEc----------cCCCCceEEEEECCCCCCcEEEEEcCCC------CE
Confidence 55677777553 488899988777554321 0011111223332 2 45677776532 46
Q ss_pred EEEECCCC-cEEEeeecCCCCCCceeeEEEEE------------------CCEEEEEccccCCCCCcCcEEEEEcCC-Cc
Q 005043 176 WTFDTETE-CWSVVEAKGDIPVARSGHTVVRA------------------SSVLILFGGEDGKRRKLNDLHMFDLKS-LT 235 (717)
Q Consensus 176 ~~yD~~t~-~W~~l~~~g~~P~~R~~hs~~~~------------------~~~Lyv~GG~~~~~~~~~~v~~yD~~t-~~ 235 (717)
.+||..+. .|............ ..++... .+.+++.||.++ .+.+||..+ ..
T Consensus 130 ~lwd~~~~~~~~~~~~~~~h~~~--v~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sgs~D~------~v~lWd~~~~~~ 201 (316)
T 3bg1_A 130 SLLTYTGEGQWEVKKINNAHTIG--CNAVSWAPAVVPGSLIDHPSGQKPNYIKRFASGGCDN------LIKLWKEEEDGQ 201 (316)
T ss_dssp EEEEECSSSCEEECCBTTSSSSC--BCCCEECCCCCC------CCSCCCCCCCBEECCBTTS------BCCEEEECTTSC
T ss_pred EEEecCCCCCcceeeeeccccCC--cceEEEccccCCccccccccccCccccceEEEecCCC------eEEEEEeCCCCc
Confidence 67777654 57543211000000 0011110 124566666543 355666653 45
Q ss_pred eEeccCCCCCCCCCc-ccEEEEECC----cEEEEEcCCCCCCCCCeEEEEECCC---CcEEEeecCCCCCCCCcceEEEE
Q 005043 236 WLPLHCTGTGPSPRS-NHVAALYDD----KNLLIFGGSSKSKTLNDLYSLDFET---MIWTRIKIRGFHPSPRAGCCGVL 307 (717)
Q Consensus 236 W~~l~~~g~~P~~R~-~~aa~~~~~----~~lyV~GG~~~~~~~ndv~~yd~~t---~~W~~v~~~g~~P~~R~~~sav~ 307 (717)
|..+.. +..-.. -.+++...+ ..+++.|+.++ .|.+||+.+ ..|...... .....-.+++.
T Consensus 202 ~~~~~~---l~~h~~~V~~v~~sp~~~~~~~~las~s~D~-----~v~iw~~~~~~~~~~~~~~~~---~~~~~v~~v~~ 270 (316)
T 3bg1_A 202 WKEEQK---LEAHSDWVRDVAWAPSIGLPTSTIASCSQDG-----RVFIWTCDDASSNTWSPKLLH---KFNDVVWHVSW 270 (316)
T ss_dssp EEEEEC---CBCCSSCEEEEECCCCSSCSCCEEEEEETTC-----EEEEEECSSTTCCCCBCCEEE---ECSSCEEEEEE
T ss_pred cceeee---cccCCCceEEEEecCCCCCCCceEEEEcCCC-----eEEEEEccCccccchhhhhhh---cCCCcEEEEEE
Confidence 665531 211111 112222222 12677777654 488888765 333211100 01111122222
Q ss_pred -ECCEEEEEecCCCCCccCeEEEEECC-CCcEEEeec
Q 005043 308 -CGTKWYIAGGGSRKKRHAETLIFDIL-KGEWSVAIT 342 (717)
Q Consensus 308 -~~~~IyV~GG~~~~~~~~dv~~yD~~-t~~W~~l~~ 342 (717)
-++.+++.||.++. +.+|+.. ...|..+..
T Consensus 271 sp~g~~las~~~D~~-----v~lw~~~~~g~~~~~~~ 302 (316)
T 3bg1_A 271 SITANILAVSGGDNK-----VTLWKESVDGQWVCISD 302 (316)
T ss_dssp CTTTCCEEEEESSSC-----EEEEEECTTSCEEEEEE
T ss_pred cCCCCEEEEEcCCCe-----EEEEEECCCCcEEEeee
Confidence 25777888886644 7777764 457887753
No 234
>3b7f_A Glycosyl hydrolase, BNR repeat; 7-bladed beta-propeller fold, structural genomics, joint CEN structural genomics, JCSG; 2.20A {Ralstonia eutropha}
Probab=90.56 E-value=19 Score=37.90 Aligned_cols=192 Identities=14% Similarity=0.131 Sum_probs=104.5
Q ss_pred EEEEEcCC--CceEEccccccCCCCCCCCCCCcccceEEEEE---CCEEEEEeccCCCCCCceEEEEEECCCCcEEEeee
Q 005043 116 VQVLNFDR--FSWTAASSKLYLSPSSLPLKIPACRGHSLISW---GKKVLLVGGKTDSGSDRVSVWTFDTETECWSVVEA 190 (717)
Q Consensus 116 v~~yd~~t--~~W~~l~~~~~~~~~~~~~~~p~r~~hs~v~~---~~~Iyv~GG~~~~~~~~~~v~~yD~~t~~W~~l~~ 190 (717)
+++|+... .+|....+. .....-++++.. .+.||+.+.... .-.-+++.+-...+|+.+..
T Consensus 33 l~~~~~~~~g~~W~~~~~~-----------~~~~~v~~i~~dp~~~~~l~~g~~~g~---~g~gl~~s~D~G~tW~~~~~ 98 (394)
T 3b7f_A 33 AWFLASDPARRTWELRGPV-----------FLGHTIHHIVQDPREPERMLMAARTGH---LGPTVFRSDDGGGNWTEATR 98 (394)
T ss_dssp EEEEEECTTSCSEEEEEEE-----------STTSEEEEEEECSSSTTCEEEEEEC-----CCEEEEEESSTTSCCEECSB
T ss_pred eEEEECCCCCCCceECCcc-----------CCCCceEEEEECCCCCCeEEEEecCCC---CCccEEEeCCCCCCceECCc
Confidence 77887655 689986431 111223455554 467887654211 11258888777889998863
Q ss_pred cCCCCCC--c-------eeeEEEEE----CCEEEEEccccCCCCCcCcEEEEEcCCCceEeccCCCCCC-----------
Q 005043 191 KGDIPVA--R-------SGHTVVRA----SSVLILFGGEDGKRRKLNDLHMFDLKSLTWLPLHCTGTGP----------- 246 (717)
Q Consensus 191 ~g~~P~~--R-------~~hs~~~~----~~~Lyv~GG~~~~~~~~~~v~~yD~~t~~W~~l~~~g~~P----------- 246 (717)
...++.. + .-.+++.. .+.||+.+- ...+++.+-...+|+.+......|
T Consensus 99 ~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~l~~g~~-------~ggl~~S~DgG~tW~~~~~~~~~p~~~~~~~~~~~ 171 (394)
T 3b7f_A 99 PPAFNKAPEGETGRVVDHVFWLTPGHASEPGTWYAGTS-------PQGLFRSTDHGASWEPVAGFNDHPMRRAWTGGEQD 171 (394)
T ss_dssp CCCCCCCC----CCCCCEEEEEEECCTTSTTCEEEEEE-------TTEEEEESSTTSBCEECHHHHTCTTHHHHHCCC--
T ss_pred cccCCCcccccccccccceeEEEeCCCCCCCEEEEEec-------CCcEEEEcCCCCCeEECcCccCCcccccccccccc
Confidence 2112211 1 11233333 467777542 245888887888999875211112
Q ss_pred ---CCCcccEEEEEC--CcEEEEEcCCCCCCCCCeEEEEECCCCcEEEeecCCC---CCCC-----CcceEEEEEC---C
Q 005043 247 ---SPRSNHVAALYD--DKNLLIFGGSSKSKTLNDLYSLDFETMIWTRIKIRGF---HPSP-----RAGCCGVLCG---T 310 (717)
Q Consensus 247 ---~~R~~~aa~~~~--~~~lyV~GG~~~~~~~ndv~~yd~~t~~W~~v~~~g~---~P~~-----R~~~sav~~~---~ 310 (717)
.....+++++.. ...||+..+. ..+++.+....+|+.+..... .|.+ ...++++... +
T Consensus 172 g~~~~~~i~~i~~d~~~~~~l~vg~~~------ggl~~s~DgG~tW~~~~~~~~~~~~p~~~~~~g~~~~~i~~~~~~~~ 245 (394)
T 3b7f_A 172 GTPDGPKMHSILVDPRDPKHLYIGMSS------GGVFESTDAGTDWKPLNRGCAANFLPDPNVEFGHDPHCVVQHPAAPD 245 (394)
T ss_dssp --CCCCEEEEEEECTTCTTCEEEEEET------BEEEEESSTTSSCEECCTTCCCTTSSSSSSSSCBCEEEEEECSSSTT
T ss_pred CCCCCCceeEEEECCCCCCEEEEEECC------CCEEEECCCCCCceECCCCccccccCCCccccCcceeEEEECCCCCC
Confidence 111223333331 2336765332 248888888899998854210 1211 2234444432 6
Q ss_pred EEEEEecCCCCCccCeEEEEECCCCcEEEee
Q 005043 311 KWYIAGGGSRKKRHAETLIFDILKGEWSVAI 341 (717)
Q Consensus 311 ~IyV~GG~~~~~~~~dv~~yD~~t~~W~~l~ 341 (717)
.||+..+ ..+++++....+|+.+.
T Consensus 246 ~l~vg~~-------~gl~~s~D~G~tW~~~~ 269 (394)
T 3b7f_A 246 ILYQQNH-------CGIYRMDRREGVWKRIG 269 (394)
T ss_dssp EEEEEET-------TEEEEEETTTTEEECGG
T ss_pred EEEEEcC-------CeEEEeCCCCCcceECC
Confidence 6777432 34889998899999875
No 235
>3o4h_A Acylamino-acid-releasing enzyme; alpha/beta hydrolase fold, beta propeller, hydrolase, oligop SIZE selectivity; HET: GOL; 1.82A {Aeropyrum pernix} PDB: 3o4i_A 3o4j_A 2hu5_A* 1ve7_A* 1ve6_A* 2hu7_A* 3o4g_A 2hu8_A* 2qr5_A 2qzp_A
Probab=90.44 E-value=10 Score=42.11 Aligned_cols=154 Identities=15% Similarity=0.123 Sum_probs=78.8
Q ss_pred CEEEEEeccCCCCCCceEEEEEEC--CCCcEEEeeecCCCCCCceeeEEEEECCEEEEEccccCCCCCcCcEEEEEcCCC
Q 005043 157 KKVLLVGGKTDSGSDRVSVWTFDT--ETECWSVVEAKGDIPVARSGHTVVRASSVLILFGGEDGKRRKLNDLHMFDLKSL 234 (717)
Q Consensus 157 ~~Iyv~GG~~~~~~~~~~v~~yD~--~t~~W~~l~~~g~~P~~R~~hs~~~~~~~Lyv~GG~~~~~~~~~~v~~yD~~t~ 234 (717)
+++++.+... .+.....+|.+++ ....- .+.. .+..+ ..+....++.+++..+..+ .+.+||+.+.
T Consensus 75 d~~l~~~~~~-~g~~~~~l~~~~~~~~g~~~-~l~~---~~~~~-~~~~s~dg~~~~~~s~~~~------~~~l~d~~~g 142 (582)
T 3o4h_A 75 GRVILVRDVS-KGAEQHALFKVNTSRPGEEQ-RLEA---VKPMR-ILSGVDTGEAVVFTGATED------RVALYALDGG 142 (582)
T ss_dssp SEEEEEEECS-TTSCCEEEEEEETTSTTCCE-ECTT---SCSBE-EEEEEECSSCEEEEEECSS------CEEEEEEETT
T ss_pred CeEEEEeccC-CCCcceEEEEEeccCCCccc-cccC---CCCce-eeeeCCCCCeEEEEecCCC------CceEEEccCC
Confidence 3555444321 1223446888888 54432 3321 12222 2222233445655544332 2447799888
Q ss_pred ceEeccCCCCCCCCCcccEEEEECCcEEEEEcCCCCCCCCCeEEEEECCCCcEEEeecCCCCCCCCcceEEEE-ECCEEE
Q 005043 235 TWLPLHCTGTGPSPRSNHVAALYDDKNLLIFGGSSKSKTLNDLYSLDFETMIWTRIKIRGFHPSPRAGCCGVL-CGTKWY 313 (717)
Q Consensus 235 ~W~~l~~~g~~P~~R~~~aa~~~~~~~lyV~GG~~~~~~~ndv~~yd~~t~~W~~v~~~g~~P~~R~~~sav~-~~~~Iy 313 (717)
....+. ..+. ...+..-+++ .+++++.... ....++++|+.++.++.+... .......+. -+++.+
T Consensus 143 ~~~~l~---~~~~---~~~~~spDG~-~la~~~~~~~-~~~~i~~~d~~~g~~~~l~~~-----~~~~~~~~~SpDG~~l 209 (582)
T 3o4h_A 143 GLRELA---RLPG---FGFVSDIRGD-LIAGLGFFGG-GRVSLFTSNLSSGGLRVFDSG-----EGSFSSASISPGMKVT 209 (582)
T ss_dssp EEEEEE---EESS---CEEEEEEETT-EEEEEEEEET-TEEEEEEEETTTCCCEEECCS-----SCEEEEEEECTTSCEE
T ss_pred cEEEee---cCCC---ceEEECCCCC-EEEEEEEcCC-CCeEEEEEcCCCCCceEeecC-----CCccccceECCCCCEE
Confidence 777664 2222 2223334566 4454443221 123599999999998877432 111122222 255555
Q ss_pred EEecCCCCCccCeEEEEECCCCcEE
Q 005043 314 IAGGGSRKKRHAETLIFDILKGEWS 338 (717)
Q Consensus 314 V~GG~~~~~~~~dv~~yD~~t~~W~ 338 (717)
+.+..++ ...++++|+.+....
T Consensus 210 ~~~~~~~---~~~i~~~d~~~~~~~ 231 (582)
T 3o4h_A 210 AGLETAR---EARLVTVDPRDGSVE 231 (582)
T ss_dssp EEEECSS---CEEEEEECTTTCCEE
T ss_pred EEccCCC---eeEEEEEcCCCCcEE
Confidence 4443332 247999999998887
No 236
>1k32_A Tricorn protease; protein degradation, substrate gating, serine protease, beta propeller, proteasome, hydrolase; 2.00A {Thermoplasma acidophilum} SCOP: b.36.1.3 b.68.7.1 b.69.9.1 c.14.1.2 PDB: 1n6e_A 1n6d_A 1n6f_A*
Probab=90.28 E-value=10 Score=45.82 Aligned_cols=237 Identities=14% Similarity=0.089 Sum_probs=118.9
Q ss_pred EECCEEEEEcccCCCCCcccEEEEEcCCCceEEccccccCCCCCCCCCCCcccceEEEEECCEEEEEeccCCCCCCceEE
Q 005043 96 VIGNKMIVVGGESGNGLLDDVQVLNFDRFSWTAASSKLYLSPSSLPLKIPACRGHSLISWGKKVLLVGGKTDSGSDRVSV 175 (717)
Q Consensus 96 ~~~~~lyV~GG~~~~~~~~~v~~yd~~t~~W~~l~~~~~~~~~~~~~~~p~r~~hs~v~~~~~Iyv~GG~~~~~~~~~~v 175 (717)
..++.+++.+..++ ...+|.+++.+..-..+... .. .......-+++.++++. ...+
T Consensus 211 ~s~d~l~~~~~~dg---~~~l~~~~~~g~~~~~l~~~------------~~-~~~~~~SpDG~~la~~~-------~~~i 267 (1045)
T 1k32_A 211 IVGHRIYFITDIDG---FGQIYSTDLDGKDLRKHTSF------------TD-YYPRHLNTDGRRILFSK-------GGSI 267 (1045)
T ss_dssp EETTEEEEEECTTS---SCEEEEEETTSCSCEECCCC------------CS-SCEEEEEESSSCEEEEE-------TTEE
T ss_pred EeCCEEEEEEeccC---ceEEEEEeCCCCcceEecCC------------CC-cceeeEcCCCCEEEEEe-------CCEE
Confidence 34667776665432 34688888877655555431 11 11122334555455542 1368
Q ss_pred EEEECCCCcEEEeeecCCCCC------CceeeEEEEE--CCEEEEEccccCCCCCcCcEEEEEcCCCceEeccCCCCCCC
Q 005043 176 WTFDTETECWSVVEAKGDIPV------ARSGHTVVRA--SSVLILFGGEDGKRRKLNDLHMFDLKSLTWLPLHCTGTGPS 247 (717)
Q Consensus 176 ~~yD~~t~~W~~l~~~g~~P~------~R~~hs~~~~--~~~Lyv~GG~~~~~~~~~~v~~yD~~t~~W~~l~~~g~~P~ 247 (717)
+.+|+.+.....+........ ......++.. +++.++++. ...++.+|..+.....+. ..+.
T Consensus 268 ~~~d~~~~~l~~l~~~~~~~~~~~~~~~~~v~~~~~S~pdG~~la~~~-------~~~i~~~~~~~~~~~~~~---~~~~ 337 (1045)
T 1k32_A 268 YIFNPDTEKIEKIEIGDLESPEDRIISIPSKFAEDFSPLDGDLIAFVS-------RGQAFIQDVSGTYVLKVP---EPLR 337 (1045)
T ss_dssp EEECTTTCCEEECCCCCCCBCCSEEEECGGGGEEEEEECGGGCEEEEE-------TTEEEEECTTSSBEEECS---CCSC
T ss_pred EEecCCceEeeeeccCcccccccccccccccceeeecCCCCCEEEEEE-------cCEEEEEcCCCCceEEcc---CCCc
Confidence 999986665554332100000 0012233333 455444443 246888888777665543 1111
Q ss_pred CCcccEEEEECCcEEEEEcCCCCCCCCCeEE-EEECCCCcEEEeecCCCCCCCCcceEEEE-ECCEEEEEecCCCCCccC
Q 005043 248 PRSNHVAALYDDKNLLIFGGSSKSKTLNDLY-SLDFETMIWTRIKIRGFHPSPRAGCCGVL-CGTKWYIAGGGSRKKRHA 325 (717)
Q Consensus 248 ~R~~~aa~~~~~~~lyV~GG~~~~~~~ndv~-~yd~~t~~W~~v~~~g~~P~~R~~~sav~-~~~~IyV~GG~~~~~~~~ 325 (717)
.+....+.. +++.++..+. ...+| .||..+.....+.. .... ....+. -+++.+++++.. .
T Consensus 338 ~~~~~~~~s-dg~~l~~~s~------~~~l~~~~d~~~~~~~~l~~----~~~~-~~~~~~SpDG~~la~~~~~-----~ 400 (1045)
T 1k32_A 338 IRYVRRGGD-TKVAFIHGTR------EGDFLGIYDYRTGKAEKFEE----NLGN-VFAMGVDRNGKFAVVANDR-----F 400 (1045)
T ss_dssp EEEEEECSS-SEEEEEEEET------TEEEEEEEETTTCCEEECCC----CCCS-EEEEEECTTSSEEEEEETT-----S
T ss_pred ceEEeeeEc-CCCeEEEEEC------CCceEEEEECCCCCceEecC----Cccc-eeeeEECCCCCEEEEECCC-----C
Confidence 122222222 4453444332 24689 99998887666541 1111 222222 256666666543 3
Q ss_pred eEEEEECCCCcEEEeecCCCCCCCCCcceEEEEEEeCCCcEEEEEcCCCC------CCCCeEEEEEccCCc
Q 005043 326 ETLIFDILKGEWSVAITSPSSSVTSNKGFTLVLVQHKEKDFLVAFGGIKK------EPSNQVEVLSIEKNE 390 (717)
Q Consensus 326 dv~~yD~~t~~W~~l~~~p~~~~~~r~g~s~v~v~~~~~~~I~v~GG~~~------~~~n~v~vyd~~~~e 390 (717)
.++++|+.+.+-..+...... ....+.+.. ++..+++++..+ .....++++|+.+.+
T Consensus 401 ~v~~~d~~tg~~~~~~~~~~~------~v~~~~~Sp--DG~~la~~~~~~~~~~~~~~~~~i~l~d~~~g~ 463 (1045)
T 1k32_A 401 EIMTVDLETGKPTVIERSREA------MITDFTISD--NSRFIAYGFPLKHGETDGYVMQAIHVYDMEGRK 463 (1045)
T ss_dssp EEEEEETTTCCEEEEEECSSS------CCCCEEECT--TSCEEEEEEEECSSTTCSCCEEEEEEEETTTTE
T ss_pred eEEEEECCCCceEEeccCCCC------CccceEECC--CCCeEEEEecCccccccCCCCCeEEEEECCCCc
Confidence 799999999887766421111 111223332 333445544322 224589999988765
No 237
>3c75_H MADH, methylamine dehydrogenase heavy chain; copper proteins, electron transfer complex, TTQ, electron transport, oxidoreductase, periplasm, transport, metal- binding; HET: TRQ; 2.50A {Paracoccus versutus}
Probab=90.07 E-value=17 Score=39.52 Aligned_cols=120 Identities=12% Similarity=-0.010 Sum_probs=60.5
Q ss_pred CEEEEEcccCCCCCcccEEEEEcCCCceEEccccccCCCCCCCCCCCcccceEEEEECCEEEEEeccC---CCCCCceEE
Q 005043 99 NKMIVVGGESGNGLLDDVQVLNFDRFSWTAASSKLYLSPSSLPLKIPACRGHSLISWGKKVLLVGGKT---DSGSDRVSV 175 (717)
Q Consensus 99 ~~lyV~GG~~~~~~~~~v~~yd~~t~~W~~l~~~~~~~~~~~~~~~p~r~~hs~v~~~~~Iyv~GG~~---~~~~~~~~v 175 (717)
.++||.-....... +.+.++|+.+++=...-+. ...| +.++...+..+||.--.. ..+...+.|
T Consensus 85 ~~vyV~n~~~~~~~-~~VsVID~~t~~vv~~I~v---------G~~P---gia~SpDgk~lyVan~~~~~~~~G~~~~~V 151 (426)
T 3c75_H 85 RRVYIQDPAHFAAI-TQQFVIDGSTGRILGMTDG---------GFLP---HPVAAEDGSFFAQASTVFERIARGKRTDYV 151 (426)
T ss_dssp TEEEEEECTTTCSS-EEEEEEETTTTEEEEEEEE---------CSSC---EEEECTTSSCEEEEEEEEEETTEEEEEEEE
T ss_pred CEEEEECCCcCCCC-CeEEEEECCCCEEEEEEEC---------CCCC---ceEECCCCCEEEEEeccccccccCCCCCEE
Confidence 55777754322212 7899999998754332221 1111 222222256788874210 011123579
Q ss_pred EEEECCCCcEE-EeeecCCCC--CCceeeEEEE--ECCEEEEEccccCCCCCcCcEEEEEcCCCce
Q 005043 176 WTFDTETECWS-VVEAKGDIP--VARSGHTVVR--ASSVLILFGGEDGKRRKLNDLHMFDLKSLTW 236 (717)
Q Consensus 176 ~~yD~~t~~W~-~l~~~g~~P--~~R~~hs~~~--~~~~Lyv~GG~~~~~~~~~~v~~yD~~t~~W 236 (717)
.+||+.+.+-. .++..+... ....-+.+++ .+..+|+..- ...+.+.++|+.+++-
T Consensus 152 sviD~~t~~vv~~I~v~g~~r~~~g~~P~~~~~spDGk~lyV~n~-----~~~~~VsVID~~t~kv 212 (426)
T 3c75_H 152 EVFDPVTFLPIADIELPDAPRFLVGTYQWMNALTPDNKNLLFYQF-----SPAPAVGVVDLEGKTF 212 (426)
T ss_dssp EEECTTTCCEEEEEEETTCCCCCBSCCGGGSEECTTSSEEEEEEC-----SSSCEEEEEETTTTEE
T ss_pred EEEECCCCcEEEEEECCCccccccCCCcceEEEcCCCCEEEEEec-----CCCCeEEEEECCCCeE
Confidence 99999998753 333210000 0011223333 3457888731 1236789999988764
No 238
>3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae}
Probab=89.90 E-value=21 Score=37.43 Aligned_cols=153 Identities=12% Similarity=0.075 Sum_probs=80.7
Q ss_pred CCEEEEEeccCCCCCCceEEEEEECCCCcEEEeeecCCCC-CCceeeEEEEE-CCEEEEEccccCCCCCcCcEEEEEcCC
Q 005043 156 GKKVLLVGGKTDSGSDRVSVWTFDTETECWSVVEAKGDIP-VARSGHTVVRA-SSVLILFGGEDGKRRKLNDLHMFDLKS 233 (717)
Q Consensus 156 ~~~Iyv~GG~~~~~~~~~~v~~yD~~t~~W~~l~~~g~~P-~~R~~hs~~~~-~~~Lyv~GG~~~~~~~~~~v~~yD~~t 233 (717)
++.+++.|+.+ ..+.+||+.+.+-...-. .+ ....-.+++.. ++.+++.|+.++ .+.+||+.+
T Consensus 181 ~~~~l~~~~~d------~~i~iwd~~~~~~~~~~~---~~~h~~~v~~~~~s~~~~~l~s~~~dg------~i~iwd~~~ 245 (437)
T 3gre_A 181 EKSLLVALTNL------SRVIIFDIRTLERLQIIE---NSPRHGAVSSICIDEECCVLILGTTRG------IIDIWDIRF 245 (437)
T ss_dssp SCEEEEEEETT------SEEEEEETTTCCEEEEEE---CCGGGCCEEEEEECTTSCEEEEEETTS------CEEEEETTT
T ss_pred CCCEEEEEeCC------CeEEEEeCCCCeeeEEEc---cCCCCCceEEEEECCCCCEEEEEcCCC------eEEEEEcCC
Confidence 46777777764 268999998876433221 11 11222233332 467777777553 488999987
Q ss_pred CceEeccCCCCCCCCCcccEEEEE----CCcEEEEEcCCCCCCCCCeEEEEECCCCcEEEeecCCC--------CCC---
Q 005043 234 LTWLPLHCTGTGPSPRSNHVAALY----DDKNLLIFGGSSKSKTLNDLYSLDFETMIWTRIKIRGF--------HPS--- 298 (717)
Q Consensus 234 ~~W~~l~~~g~~P~~R~~~aa~~~----~~~~lyV~GG~~~~~~~ndv~~yd~~t~~W~~v~~~g~--------~P~--- 298 (717)
......- ..+....-.+++.. .+..+++.|+.++ .|.+||+.+..-...-.... .|.
T Consensus 246 ~~~~~~~---~~~~~~~v~~~~~~~~~s~~~~~l~s~~~dg-----~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 317 (437)
T 3gre_A 246 NVLIRSW---SFGDHAPITHVEVCQFYGKNSVIVVGGSSKT-----FLTIWNFVKGHCQYAFINSDEQPSMEHFLPIEKG 317 (437)
T ss_dssp TEEEEEE---BCTTCEEEEEEEECTTTCTTEEEEEEESTTE-----EEEEEETTTTEEEEEEESSSSCCCGGGGSCBCSS
T ss_pred ccEEEEE---ecCCCCceEEEEeccccCCCccEEEEEcCCC-----cEEEEEcCCCcEEEEEEcCCCCCccceecccccc
Confidence 6543321 01111111112111 2333566666543 58999998765332211000 010
Q ss_pred -----------CCcceEEEEECCEEEEEecCCCCCccCeEEEEECCCCc
Q 005043 299 -----------PRAGCCGVLCGTKWYIAGGGSRKKRHAETLIFDILKGE 336 (717)
Q Consensus 299 -----------~R~~~sav~~~~~IyV~GG~~~~~~~~dv~~yD~~t~~ 336 (717)
...-.+++..++.+++.||.++ .+.+||+.+.+
T Consensus 318 l~~~~~~~~~~~~~v~~l~~~~~~~l~s~~~d~-----~i~~wd~~~~~ 361 (437)
T 3gre_A 318 LEELNFCGIRSLNALSTISVSNDKILLTDEATS-----SIVMFSLNELS 361 (437)
T ss_dssp GGGCCCCCCCSGGGGCCEEEETTEEEEEEGGGT-----EEEEEETTCGG
T ss_pred cccceecccccCCceEEEEECCceEEEecCCCC-----eEEEEECCCcc
Confidence 0112233444888889998764 48899988765
No 239
>3iuj_A Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas punctata} PDB: 3iul_A 3ium_A 3ivm_A* 3iur_A* 3iun_A* 3iuq_A* 3muo_A* 3mun_A*
Probab=89.88 E-value=32 Score=39.40 Aligned_cols=147 Identities=15% Similarity=0.096 Sum_probs=81.3
Q ss_pred eEEEEEECCCC--cEEEeeecCCCCCCceeeEEEEECCEEEEEccccCCCCCcCcEEEEEcCCC---ceEeccCCCCCCC
Q 005043 173 VSVWTFDTETE--CWSVVEAKGDIPVARSGHTVVRASSVLILFGGEDGKRRKLNDLHMFDLKSL---TWLPLHCTGTGPS 247 (717)
Q Consensus 173 ~~v~~yD~~t~--~W~~l~~~g~~P~~R~~hs~~~~~~~Lyv~GG~~~~~~~~~~v~~yD~~t~---~W~~l~~~g~~P~ 247 (717)
+.+|++|+.+. .|..+.. +...........++.||+....+. ....++.+|+.+. .|+.+.+. ..
T Consensus 259 ~~i~~~d~~~~~~~~~~l~~----~~~~~~~~~~~~g~~l~~~t~~~~---~~~~l~~~d~~~~~~~~~~~l~~~---~~ 328 (693)
T 3iuj_A 259 NRLYVKDLSQENAPLLTVQG----DLDADVSLVDNKGSTLYLLTNRDA---PNRRLVTVDAANPGPAHWRDLIPE---RQ 328 (693)
T ss_dssp CEEEEEETTSTTCCCEEEEC----SSSSCEEEEEEETTEEEEEECTTC---TTCEEEEEETTSCCGGGCEEEECC---CS
T ss_pred cEEEEEECCCCCCceEEEeC----CCCceEEEEeccCCEEEEEECCCC---CCCEEEEEeCCCCCccccEEEecC---CC
Confidence 58999998776 6887763 222122223446789999875433 2467999998764 48876421 11
Q ss_pred CCcccEEEEECCcEEEEEcCCCCCCCCCeEEEEECCCCcEEEeecCCCCCCCCcceEEEEE---CCEEEEEe-cCCCCCc
Q 005043 248 PRSNHVAALYDDKNLLIFGGSSKSKTLNDLYSLDFETMIWTRIKIRGFHPSPRAGCCGVLC---GTKWYIAG-GGSRKKR 323 (717)
Q Consensus 248 ~R~~~aa~~~~~~~lyV~GG~~~~~~~ndv~~yd~~t~~W~~v~~~g~~P~~R~~~sav~~---~~~IyV~G-G~~~~~~ 323 (717)
. .. ... ..++.|++..-.++ ...++++|+++.....+.. |.... ...+.. ++.+++.. +.. .
T Consensus 329 ~-~~-~~s-~~g~~lv~~~~~~g---~~~l~~~d~~g~~~~~l~~----p~~~~-~~~~~~~~d~~~l~~~~ss~~---t 394 (693)
T 3iuj_A 329 Q-VL-TVH-SGSGYLFAEYMVDA---TARVEQFDYEGKRVREVAL----PGLGS-VSGFNGKHDDPALYFGFENYA---Q 394 (693)
T ss_dssp S-CE-EEE-EETTEEEEEEEETT---EEEEEEECTTSCEEEEECC----SSSSE-EEECCCCTTCSCEEEEEECSS---S
T ss_pred C-EE-EEE-EECCEEEEEEEECC---eeEEEEEECCCCeeEEeec----CCCce-EEeeecCCCCCEEEEEecCCC---C
Confidence 1 11 333 33443544332221 2468999998766655532 21111 111111 23444432 222 2
Q ss_pred cCeEEEEECCCCcEEEeecC
Q 005043 324 HAETLIFDILKGEWSVAITS 343 (717)
Q Consensus 324 ~~dv~~yD~~t~~W~~l~~~ 343 (717)
-..++.||+.+.+++.+...
T Consensus 395 P~~l~~~d~~~g~~~~l~~~ 414 (693)
T 3iuj_A 395 PPTLYRFEPKSGAISLYRAS 414 (693)
T ss_dssp CCEEEEECTTTCCEEEEECC
T ss_pred CCEEEEEECCCCeEEEEEeC
Confidence 25799999999988887643
No 240
>1itv_A MMP9; adaptive molecular recognition, beta propeller, dimer, hydrolase; 1.95A {Homo sapiens} SCOP: b.66.1.1
Probab=89.85 E-value=7.7 Score=37.44 Aligned_cols=151 Identities=14% Similarity=0.157 Sum_probs=83.2
Q ss_pred EEEEECCEEEEEeccCCCCCCceEEEEEECCC--CcEEEeeec---CCCCCCceeeEEEEE--CCEEEEEccccCCCCCc
Q 005043 151 SLISWGKKVLLVGGKTDSGSDRVSVWTFDTET--ECWSVVEAK---GDIPVARSGHTVVRA--SSVLILFGGEDGKRRKL 223 (717)
Q Consensus 151 s~v~~~~~Iyv~GG~~~~~~~~~~v~~yD~~t--~~W~~l~~~---g~~P~~R~~hs~~~~--~~~Lyv~GG~~~~~~~~ 223 (717)
+++..++.+|+|=|. .+|+++... ......... ..+|.. .. ++... ++++|+|-|
T Consensus 11 Ai~~~~g~~yfFkg~--------~~Wr~~~~~~~~~~~p~~Is~~w~glP~~-ID-Aa~~~~~~~~~yfFkG-------- 72 (195)
T 1itv_A 11 AIAEIGNQLYLFKDG--------KYWRFSEGRGSRPQGPFLIADKWPALPRK-LD-SVFEEPLSKKLFFFSG-------- 72 (195)
T ss_dssp EEEEETTEEEEEETT--------EEEEECCSSSCCCEEEEEHHHHCTTSCSS-CS-EEEECTTTCCEEEEET--------
T ss_pred EEEEeCCEEEEEECC--------EEEEEECCccccCCCcEEhhhccCCCCCC-cc-EEEEECCCCeEEEEeC--------
Confidence 455679999999774 489998765 233222211 134532 22 23332 578999966
Q ss_pred CcEEEEEcCCCce-EeccCCCCCCC--CCcccEEEEECCcEEEEEcCCCCCCCCCeEEEEECCCCcEE-----Eee-cCC
Q 005043 224 NDLHMFDLKSLTW-LPLHCTGTGPS--PRSNHVAALYDDKNLLIFGGSSKSKTLNDLYSLDFETMIWT-----RIK-IRG 294 (717)
Q Consensus 224 ~~v~~yD~~t~~W-~~l~~~g~~P~--~R~~~aa~~~~~~~lyV~GG~~~~~~~ndv~~yd~~t~~W~-----~v~-~~g 294 (717)
+..|+|+..+..- ..+...| +|. .....+.. ..+..+|+|-| +..|+||..+++-. .+. .-+
T Consensus 73 ~~yw~~~~~~~~~Pk~i~~~G-~p~~~~~iDAA~~-~~~g~~yfFkg-------~~ywr~d~~~~~~~~gyPr~i~~~w~ 143 (195)
T 1itv_A 73 RQVWVYTGASVLGPRRLDKLG-LGADVAQVTGALR-SGRGKMLLFSG-------RRLWRFDVKAQMVDPRSASEVDRMFP 143 (195)
T ss_dssp TEEEEEETTEEEEEEEGGGGT-CCTTCCCCCEEEE-CSTTEEEEEET-------TEEEEEETTTTEECGGGCEEHHHHST
T ss_pred CEEEEEcCCccCCCEEeeecc-cCCCccceeEEEE-cCCCeEEEEeC-------CEEEEEeCCcccccCCCccChhhcCC
Confidence 4467777532111 1122111 332 23333333 33345898876 36899998765321 111 010
Q ss_pred CCCCCCcceEEEEECCEEEEEecCCCCCccCeEEEEECCCCcE
Q 005043 295 FHPSPRAGCCGVLCGTKWYIAGGGSRKKRHAETLIFDILKGEW 337 (717)
Q Consensus 295 ~~P~~R~~~sav~~~~~IyV~GG~~~~~~~~dv~~yD~~t~~W 337 (717)
..|..-.++...++.+|+|-| +..|.||..+..-
T Consensus 144 --Gvp~~idaa~~~~g~~Yffkg-------~~y~~~~~~~~~v 177 (195)
T 1itv_A 144 --GVPLDTHDVFQFREKAYFCQD-------RFYWRVSSRSELN 177 (195)
T ss_dssp --TSCSSCSEEEEETTEEEEEET-------TEEEEEECCTTCC
T ss_pred --CCCCCCCEEEEeCCeEEEEeC-------CEEEEEECCccEE
Confidence 112233455666899999998 4689999877653
No 241
>3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A
Probab=89.84 E-value=9.5 Score=38.53 Aligned_cols=141 Identities=11% Similarity=0.026 Sum_probs=71.0
Q ss_pred EEEEEECCCCcE-EEeeecCCCCCCceeeEEEE-EC----CEEEEEccccCCCCCcCcEEEEEcCCCceEeccCCCCCCC
Q 005043 174 SVWTFDTETECW-SVVEAKGDIPVARSGHTVVR-AS----SVLILFGGEDGKRRKLNDLHMFDLKSLTWLPLHCTGTGPS 247 (717)
Q Consensus 174 ~v~~yD~~t~~W-~~l~~~g~~P~~R~~hs~~~-~~----~~Lyv~GG~~~~~~~~~~v~~yD~~t~~W~~l~~~g~~P~ 247 (717)
.+.+||..+... ..+...........-.+++. .+ +.+++.|+.++ .+.+||+.+.+-...- . ..
T Consensus 45 ~v~vw~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~dg------~i~v~d~~~~~~~~~~---~-~~ 114 (366)
T 3k26_A 45 RVTLYECHSQGEIRLLQSYVDADADENFYTCAWTYDSNTSHPLLAVAGSRG------IIRIINPITMQCIKHY---V-GH 114 (366)
T ss_dssp EEEEEEECGGGCEEEEEEEECSCTTCCEEEEEEEECTTTCCEEEEEEETTC------EEEEECTTTCCEEEEE---E-SC
T ss_pred EEEEEEcCCCcEEEeeeeccccCCCCcEEEEEeccCCCCCCCEEEEecCCC------EEEEEEchhceEeeee---c-CC
Confidence 477888775442 23321111111122222332 23 46778777543 4888998766532211 0 01
Q ss_pred CCcccEEEEEC-CcEEEEEcCCCCCCCCCeEEEEECCCCcEEEeecCCCCCCCCcceEEEEE-CCEEEEEecCCCCCccC
Q 005043 248 PRSNHVAALYD-DKNLLIFGGSSKSKTLNDLYSLDFETMIWTRIKIRGFHPSPRAGCCGVLC-GTKWYIAGGGSRKKRHA 325 (717)
Q Consensus 248 ~R~~~aa~~~~-~~~lyV~GG~~~~~~~ndv~~yd~~t~~W~~v~~~g~~P~~R~~~sav~~-~~~IyV~GG~~~~~~~~ 325 (717)
...-.++.... +..+++.|+.++ .|.+||+.+..-...-.. .......-.+++.. ++..++.|+.++
T Consensus 115 ~~~i~~~~~~~~~~~~l~s~~~dg-----~i~iwd~~~~~~~~~~~~-~~~~~~~v~~~~~~~~~~~l~~~~~dg----- 183 (366)
T 3k26_A 115 GNAINELKFHPRDPNLLLSVSKDH-----ALRLWNIQTDTLVAIFGG-VEGHRDEVLSADYDLLGEKIMSCGMDH----- 183 (366)
T ss_dssp CSCEEEEEECSSCTTEEEEEETTS-----CEEEEETTTTEEEEEECS-TTSCSSCEEEEEECTTSSEEEEEETTS-----
T ss_pred CCcEEEEEECCCCCCEEEEEeCCC-----eEEEEEeecCeEEEEecc-cccccCceeEEEECCCCCEEEEecCCC-----
Confidence 11122333333 333777777654 499999988765444210 00111222222222 566777787654
Q ss_pred eEEEEECCCC
Q 005043 326 ETLIFDILKG 335 (717)
Q Consensus 326 dv~~yD~~t~ 335 (717)
.+.+||+.+.
T Consensus 184 ~i~i~d~~~~ 193 (366)
T 3k26_A 184 SLKLWRINSK 193 (366)
T ss_dssp CEEEEESCSH
T ss_pred CEEEEECCCC
Confidence 4889998764
No 242
>2ocy_A RAB guanine nucleotide exchange factor SEC2; RAB, GEF, guanine exchange factor, coiled-coil, endocytosis/exocytosis complex; 3.30A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=89.83 E-value=0.6 Score=43.37 Aligned_cols=120 Identities=22% Similarity=0.312 Sum_probs=65.6
Q ss_pred HHHHHHHHHHHhcchhHHHHHHHhhHHHHHhhhh---hHHhhHHHHHHHHHHHHHHHHHHHHHHhhhhhhh---------
Q 005043 571 YESKMAALIRKNGILEGQLAAALVNREAAEKNFS---SVLKSRQEMEKKLADSLKEMELLKEKLAGLELAQ--------- 638 (717)
Q Consensus 571 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~---~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~--------- 638 (717)
..+|+-..|-+-..||..|.++-...+.+.-++. ..=+...+++.+++....|++.|+++++......
T Consensus 4 LStKLI~Ain~qs~LeD~L~~~R~el~~~~~ri~~lE~~r~~~~~l~~~~~~~~~e~~~L~~~l~~E~~~R~~aE~~~~~ 83 (154)
T 2ocy_A 4 LSTQLIESVDKQSHLEEQLNKSLKTIASQKAAIENYNQLKEDYNTLKRELSDRDDEVKRLREDIAKENELRTKAEEEADK 83 (154)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHH
T ss_pred hHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3567777777888888888877666654333222 2222233344555566666666655553322111
Q ss_pred -------------hhhcccccccccCC---ccchhhHHHHHHHHHHHHHHhhhhccchhhccccceeeEEEeehhhhhhh
Q 005043 639 -------------EEANSLSNIVHSDN---VRLEHDVAFLKAVLDDTQKELHSTRGVLAGERARAFQLQVEVFHLKQRLQ 702 (717)
Q Consensus 639 -------------~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 702 (717)
||||+ ||...+ ..+|.-+.-|+ +.|+-++++|.. ||-.|-+||+-++
T Consensus 84 ie~ElEeLTasLFeEAN~---MVa~ar~~~~~~e~r~~~L~-------~ql~e~~~~l~~-------lq~ql~~LK~v~~ 146 (154)
T 2ocy_A 84 LNKEVEDLTASLFDEANN---MVADARKEKYAIEILNKRLT-------EQLREKDTLLDT-------LTLQLKNLKKVMH 146 (154)
T ss_dssp HHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHH-------HHHHHHHHHHTTS
T ss_pred HHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHH-------HHHHHHHHHHHHH
Confidence 55664 665431 12233344444 444444555543 5566779999999
Q ss_pred hhccc
Q 005043 703 SLENR 707 (717)
Q Consensus 703 ~~~~~ 707 (717)
.||+-
T Consensus 147 ~m~~e 151 (154)
T 2ocy_A 147 SLDNE 151 (154)
T ss_dssp CCC--
T ss_pred Hhhhc
Confidence 99863
No 243
>3dr2_A Exported gluconolactonase; gluconolactonase SMP-30, six-bladed-propeller dimer, vitamin C, hydrolase; 1.67A {Xanthomonas campestris PV}
Probab=89.81 E-value=5.1 Score=40.61 Aligned_cols=155 Identities=10% Similarity=-0.015 Sum_probs=78.8
Q ss_pred CCEEEEEeccCCCCCCceEEEEEECCCCcEEEeeecCCCCCCceeeEEEEE-CCEEEEEccccCCCCCcCcEEEEEcCCC
Q 005043 156 GKKVLLVGGKTDSGSDRVSVWTFDTETECWSVVEAKGDIPVARSGHTVVRA-SSVLILFGGEDGKRRKLNDLHMFDLKSL 234 (717)
Q Consensus 156 ~~~Iyv~GG~~~~~~~~~~v~~yD~~t~~W~~l~~~g~~P~~R~~hs~~~~-~~~Lyv~GG~~~~~~~~~~v~~yD~~t~ 234 (717)
++.||+.+-.. +.+++|++ ++..+.... +.. ...+++.. +++||+... ....+++||+. .
T Consensus 56 g~~l~~~d~~~------~~i~~~~~-~g~~~~~~~----~~~-~~~gl~~d~dG~l~v~~~------~~~~v~~~~~~-g 116 (305)
T 3dr2_A 56 QRTLVWSDLVG------RRVLGWRE-DGTVDVLLD----ATA-FTNGNAVDAQQRLVHCEH------GRRAITRSDAD-G 116 (305)
T ss_dssp GTEEEEEETTT------TEEEEEET-TSCEEEEEE----SCS-CEEEEEECTTSCEEEEET------TTTEEEEECTT-S
T ss_pred CCEEEEEECCC------CEEEEEeC-CCCEEEEeC----CCC-ccceeeECCCCCEEEEEC------CCCEEEEECCC-C
Confidence 45688776432 36899998 455554442 211 12233333 568887631 12458889886 6
Q ss_pred ceEeccCC-CCCCCCCcccEEEEECCcEEEEE----cCCCC--------CCCCCeEEEEECCCCcEEEeecCCCCCCCCc
Q 005043 235 TWLPLHCT-GTGPSPRSNHVAALYDDKNLLIF----GGSSK--------SKTLNDLYSLDFETMIWTRIKIRGFHPSPRA 301 (717)
Q Consensus 235 ~W~~l~~~-g~~P~~R~~~aa~~~~~~~lyV~----GG~~~--------~~~~ndv~~yd~~t~~W~~v~~~g~~P~~R~ 301 (717)
+.+.+... ...+..+. ..+++..+..+|+. |-... ......|++||+.++.++.+. .. ..
T Consensus 117 ~~~~~~~~~~~~~~~~~-~~i~~d~dG~l~~td~~~g~~~~~~~~~~~~~~~~~~v~~~d~~~g~~~~~~-~~--~~--- 189 (305)
T 3dr2_A 117 QAHLLVGRYAGKRLNSP-NDLIVARDGAIWFTDPPFGLRKPSQGCPADPELAHHSVYRLPPDGSPLQRMA-DL--DH--- 189 (305)
T ss_dssp CEEEEECEETTEECSCC-CCEEECTTSCEEEECCSGGGSCGGGSCCCCCSSSCEEEEEECSSSCCCEEEE-EE--SS---
T ss_pred CEEEEEeccCCCccCCC-CCEEECCCCCEEEeCcCCCccccccccccccccCCCeEEEEcCCCCcEEEEe-cC--CC---
Confidence 66555311 01111111 12344434447774 43211 012357999999888887764 21 11
Q ss_pred ceEEEEE-C-CEEEEEecCCCCCccCeEEEEECCCCc
Q 005043 302 GCCGVLC-G-TKWYIAGGGSRKKRHAETLIFDILKGE 336 (717)
Q Consensus 302 ~~sav~~-~-~~IyV~GG~~~~~~~~dv~~yD~~t~~ 336 (717)
-.+.+.. + ..||+............+++||+....
T Consensus 190 p~gl~~spdg~~lyv~~~~~~~~~~~~i~~~~~~~~~ 226 (305)
T 3dr2_A 190 PNGLAFSPDEQTLYVSQTPEQGHGSVEITAFAWRDGA 226 (305)
T ss_dssp EEEEEECTTSSEEEEEECCC---CCCEEEEEEEETTE
T ss_pred CcceEEcCCCCEEEEEecCCcCCCCCEEEEEEecCCC
Confidence 1223332 3 458877643211112569999987654
No 244
>3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens}
Probab=89.79 E-value=18 Score=36.38 Aligned_cols=144 Identities=11% Similarity=0.101 Sum_probs=73.8
Q ss_pred CEEEEEeccCCCCCCceEEEEEECCCCcEEE-eeecCCCCCCceeeEEEEE-CCEEEEEccccCCCCCcCcEEEEEcCCC
Q 005043 157 KKVLLVGGKTDSGSDRVSVWTFDTETECWSV-VEAKGDIPVARSGHTVVRA-SSVLILFGGEDGKRRKLNDLHMFDLKSL 234 (717)
Q Consensus 157 ~~Iyv~GG~~~~~~~~~~v~~yD~~t~~W~~-l~~~g~~P~~R~~hs~~~~-~~~Lyv~GG~~~~~~~~~~v~~yD~~t~ 234 (717)
+.+++.|+.+. .+.+||..+..... .... .....-.+++.. ++.+++.|+.+ ..+.+||+.+.
T Consensus 54 g~~l~~~~~dg------~i~iw~~~~~~~~~~~~~~---~h~~~v~~~~~~~~~~~l~s~~~d------g~v~iwd~~~~ 118 (368)
T 3mmy_A 54 GNFLIAGSWAN------DVRCWEVQDSGQTIPKAQQ---MHTGPVLDVCWSDDGSKVFTASCD------KTAKMWDLSSN 118 (368)
T ss_dssp SEEEEEEETTS------EEEEEEECTTSCEEEEEEE---ECSSCEEEEEECTTSSEEEEEETT------SEEEEEETTTT
T ss_pred ceEEEEECCCC------cEEEEEcCCCCceeEEEec---cccCCEEEEEECcCCCEEEEEcCC------CcEEEEEcCCC
Confidence 37888887642 57888887633222 1110 011111223332 45666676644 35889999888
Q ss_pred ceEeccCCCCCCCCCcccEEEE--ECCcEEEEEcCCCCCCCCCeEEEEECCCCcEEEeecCCCCCCCCcceEEEEECCEE
Q 005043 235 TWLPLHCTGTGPSPRSNHVAAL--YDDKNLLIFGGSSKSKTLNDLYSLDFETMIWTRIKIRGFHPSPRAGCCGVLCGTKW 312 (717)
Q Consensus 235 ~W~~l~~~g~~P~~R~~~aa~~--~~~~~lyV~GG~~~~~~~ndv~~yd~~t~~W~~v~~~g~~P~~R~~~sav~~~~~I 312 (717)
...... .. ...-.++.. ..+..+++.|+.++ .+..||+.+..-...-. .+....+.....+.+
T Consensus 119 ~~~~~~---~~--~~~v~~~~~~~~~~~~~l~~~~~dg-----~i~vwd~~~~~~~~~~~-----~~~~~~~~~~~~~~~ 183 (368)
T 3mmy_A 119 QAIQIA---QH--DAPVKTIHWIKAPNYSCVMTGSWDK-----TLKFWDTRSSNPMMVLQ-----LPERCYCADVIYPMA 183 (368)
T ss_dssp EEEEEE---EC--SSCEEEEEEEECSSCEEEEEEETTS-----EEEEECSSCSSCSEEEE-----CSSCEEEEEEETTEE
T ss_pred Cceeec---cc--cCceEEEEEEeCCCCCEEEEccCCC-----cEEEEECCCCcEEEEEe-----cCCCceEEEecCCee
Confidence 765543 11 111222333 34444677777653 58999987654222211 112233334445554
Q ss_pred EEEecCCCCCccCeEEEEECCCCc
Q 005043 313 YIAGGGSRKKRHAETLIFDILKGE 336 (717)
Q Consensus 313 yV~GG~~~~~~~~dv~~yD~~t~~ 336 (717)
++.++ + ..+.+||+....
T Consensus 184 ~~~~~-~-----~~i~~~~~~~~~ 201 (368)
T 3mmy_A 184 VVATA-E-----RGLIVYQLENQP 201 (368)
T ss_dssp EEEEG-G-----GCEEEEECSSSC
T ss_pred EEEeC-C-----CcEEEEEecccc
Confidence 44443 3 247888887653
No 245
>4ggc_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; HET: MRD; 1.35A {Homo sapiens}
Probab=89.72 E-value=17 Score=35.93 Aligned_cols=234 Identities=11% Similarity=0.058 Sum_probs=108.4
Q ss_pred CCEEEEEcccCCCCCcccEEEEEcCCCceEEccccccCCCCCCCCCCCcccceEEEEECCEEEEEeccCCCCCCceEEEE
Q 005043 98 GNKMIVVGGESGNGLLDDVQVLNFDRFSWTAASSKLYLSPSSLPLKIPACRGHSLISWGKKVLLVGGKTDSGSDRVSVWT 177 (717)
Q Consensus 98 ~~~lyV~GG~~~~~~~~~v~~yd~~t~~W~~l~~~~~~~~~~~~~~~p~r~~hs~v~~~~~Iyv~GG~~~~~~~~~~v~~ 177 (717)
+++.++.|+.++ .+.+||..+++-...... . . .........+.+++.|+... .+..
T Consensus 78 ~~~~l~sgs~Dg-----~v~iw~~~~~~~~~~~~~-----------h-~-~~~~~~~~~~~~l~s~~~~~------~~~~ 133 (318)
T 4ggc_A 78 EGNYLAVGTSSA-----EVQLWDVQQQKRLRNMTS-----------H-S-ARVGSLSWNSYILSSGSRSG------HIHH 133 (318)
T ss_dssp TSSEEEEEETTS-----EEEEEETTTTEEEEEEEC-----------C-S-SCEEEEEEETTEEEEEETTS------EEEE
T ss_pred CCCEEEEEECCC-----cEEEeecCCceeEEEecC-----------c-c-ceEEEeecCCCEEEEEecCC------ceEe
Confidence 466777787653 588899888753322210 0 1 11223344555666666532 4566
Q ss_pred EECCCCcEEEeeecCCCCCCceeeEEEEECCEEEEEccccCCCCCcCcEEEEEcCCCceEeccCCCCCCCCCcccEEEEE
Q 005043 178 FDTETECWSVVEAKGDIPVARSGHTVVRASSVLILFGGEDGKRRKLNDLHMFDLKSLTWLPLHCTGTGPSPRSNHVAALY 257 (717)
Q Consensus 178 yD~~t~~W~~l~~~g~~P~~R~~hs~~~~~~~Lyv~GG~~~~~~~~~~v~~yD~~t~~W~~l~~~g~~P~~R~~~aa~~~ 257 (717)
++..+.........+ .............+.+++.|+.++ .+.+||..+.+-..............-.+.+..
T Consensus 134 ~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~l~s~~~d~------~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~ 205 (318)
T 4ggc_A 134 HDVRVAEHHVATLSG--HSQEVCGLRWAPDGRHLASGGNDN------LVNVWPSAPGEGGWVPLQTFTQHQGAVKAVAWC 205 (318)
T ss_dssp EETTSSSCEEEEEEC--CSSCEEEEEECTTSSEEEEEETTS------CEEEEESSCBTTBSCCSEEECCCCSCEEEEEEC
T ss_pred eecCCCceeEEEEcC--ccCceEEEEEcCCCCEEEEEecCc------ceeEEECCCCcccccceeeecccCCceEEEEec
Confidence 666555433322111 111122222223456667766543 377888876432111000000011111122222
Q ss_pred --CCcEEEEEcCCCCCCCCCeEEEEECCCCcEEEeecCCCCCCCCcceEEEEE--CCEEEEEecCCCCCccCeEEEEECC
Q 005043 258 --DDKNLLIFGGSSKSKTLNDLYSLDFETMIWTRIKIRGFHPSPRAGCCGVLC--GTKWYIAGGGSRKKRHAETLIFDIL 333 (717)
Q Consensus 258 --~~~~lyV~GG~~~~~~~ndv~~yd~~t~~W~~v~~~g~~P~~R~~~sav~~--~~~IyV~GG~~~~~~~~dv~~yD~~ 333 (717)
+...+++.+|.. ...+..||.....-...... . .....++.. ++.+++.+|... ..+.+||..
T Consensus 206 ~~~~~~~~~~~~~~----~~~i~lwd~~~~~~~~~~~~---~--~~v~~~~~~~~~~~~~~~sg~~d----~~i~iwd~~ 272 (318)
T 4ggc_A 206 PWQSNVLATGGGTS----DRHIRIWNVCSGACLSAVDA---H--SQVCSILWSPHYKELISGHGFAQ----NQLVIWKYP 272 (318)
T ss_dssp TTSTTEEEEEECTT----TCEEEEEETTTCCEEEEEEC---S--SCEEEEEEETTTTEEEEEECTTT----CCEEEEETT
T ss_pred CCCCcEEEEEecCC----CCEEEEEecccccccccccc---e--eeeeeeeecccccceEEEEEcCC----CEEEEEECC
Confidence 233344444432 23578889877765544332 1 111222222 456666555432 248899988
Q ss_pred CCcEEEeecCCCCCCCCCcceEEEEEEeCCCcEEEEEcCCCCCCCCeEEEEEccC
Q 005043 334 KGEWSVAITSPSSSVTSNKGFTLVLVQHKEKDFLVAFGGIKKEPSNQVEVLSIEK 388 (717)
Q Consensus 334 t~~W~~l~~~p~~~~~~r~g~s~v~v~~~~~~~I~v~GG~~~~~~n~v~vyd~~~ 388 (717)
+.+-.... ... ......+.+.. ++.+++.||.++ .|.++|+..
T Consensus 273 ~~~~~~~l--~gH----~~~V~~l~~sp--dg~~l~S~s~D~----~v~iWd~~~ 315 (318)
T 4ggc_A 273 TMAKVAEL--KGH----TSRVLSLTMSP--DGATVASAAADE----TLRLWRCFE 315 (318)
T ss_dssp TCCEEEEE--CCC----SSCEEEEEECT--TSSCEEEEETTT----EEEEECCSC
T ss_pred CCcEEEEE--cCC----CCCEEEEEEcC--CCCEEEEEecCC----eEEEEECCC
Confidence 76533221 111 11223333432 444667777653 466777644
No 246
>2gop_A Trilobed protease; beta propeller, open velcro, hydrolase; 2.00A {Pyrococcus furiosus}
Probab=89.54 E-value=19 Score=36.36 Aligned_cols=141 Identities=17% Similarity=0.122 Sum_probs=72.2
Q ss_pred ceEEEEEECCCCcE-EEeeecCCCCCCceeeEEEEECCEEEEEccccCCCC--C-cCcEEEEEcCCCceEeccCCCCCCC
Q 005043 172 RVSVWTFDTETECW-SVVEAKGDIPVARSGHTVVRASSVLILFGGEDGKRR--K-LNDLHMFDLKSLTWLPLHCTGTGPS 247 (717)
Q Consensus 172 ~~~v~~yD~~t~~W-~~l~~~g~~P~~R~~hs~~~~~~~Lyv~GG~~~~~~--~-~~~v~~yD~~t~~W~~l~~~g~~P~ 247 (717)
...++++|+.++.. ..+.. + .....+...+.+++.+....... . ...+|.+| +..+..+.. .
T Consensus 151 ~~~l~~~d~~~~~~~~~l~~----~---~~~~~~~spdg~~~~~~~~~~~~~~~~~~~l~~~d--~~~~~~l~~---~-- 216 (347)
T 2gop_A 151 KTTFWIFDTESEEVIEEFEK----P---RFSSGIWHRDKIVVNVPHREIIPQYFKFWDIYIWE--DGKEEKMFE---K-- 216 (347)
T ss_dssp EEEEEEEETTTTEEEEEEEE----E---TTCEEEEETTEEEEEEECCCSSCCSSCCEEEEEEE--TTEEEEEEE---E--
T ss_pred cceEEEEECCCCeEEeeecC----C---CcccccCCCCeEEEEEecccccccccccccEEEeC--CCceEEecc---C--
Confidence 35799999999887 66652 2 22233344433555554332211 2 45788888 677776641 1
Q ss_pred CCcccEEEEECCcEEEEEcCCCC--CCCCCeEEEEECCCCcEEEeecCCCCCCCCcceEEEEECCEEEEEecCCCCCccC
Q 005043 248 PRSNHVAALYDDKNLLIFGGSSK--SKTLNDLYSLDFETMIWTRIKIRGFHPSPRAGCCGVLCGTKWYIAGGGSRKKRHA 325 (717)
Q Consensus 248 ~R~~~aa~~~~~~~lyV~GG~~~--~~~~ndv~~yd~~t~~W~~v~~~g~~P~~R~~~sav~~~~~IyV~GG~~~~~~~~ 325 (717)
.......-+++.|++.+.... ......++.+| ++.+..+... ..........+.+.+|+.+...+ ..
T Consensus 217 --~~~~~~spdg~~l~~~~~~~~~~~~~~~~l~~~d--~~~~~~l~~~----~~~~~~~~~~~sdg~~~~~~~~~---~~ 285 (347)
T 2gop_A 217 --VSFYAVDSDGERILLYGKPEKKYMSEHNKLYIYD--GKEVMGILDE----VDRGVGQAKIKDGKVYFTLFEEG---SV 285 (347)
T ss_dssp --ESEEEEEECSSCEEEEECCSSSCCCSSCEEEEEC--SSCEEESSTT----CCSEEEEEEEETTEEEEEEEETT---EE
T ss_pred --cceeeECCCCCEEEEEEccccCCccccceEEEEC--CCceEecccc----CCcccCCccEEcCcEEEEEecCC---cE
Confidence 112222445664544443221 12346799999 6677766432 11222221223244777665443 24
Q ss_pred eEEEEECCCCcEEEe
Q 005043 326 ETLIFDILKGEWSVA 340 (717)
Q Consensus 326 dv~~yD~~t~~W~~l 340 (717)
.+| ++ +.....+
T Consensus 286 ~l~-~~--~g~~~~~ 297 (347)
T 2gop_A 286 NLY-IW--DGEIKPI 297 (347)
T ss_dssp EEE-EE--SSSEEEE
T ss_pred EEE-Ec--CCceEEE
Confidence 577 77 3444444
No 247
>1k32_A Tricorn protease; protein degradation, substrate gating, serine protease, beta propeller, proteasome, hydrolase; 2.00A {Thermoplasma acidophilum} SCOP: b.36.1.3 b.68.7.1 b.69.9.1 c.14.1.2 PDB: 1n6e_A 1n6d_A 1n6f_A*
Probab=89.46 E-value=43 Score=40.30 Aligned_cols=197 Identities=11% Similarity=0.050 Sum_probs=103.3
Q ss_pred cEEEEEcCCCceEEccccccCCCCCCCCCCCcccceEEEEECCEEEEEeccCCCCCCceEEEEEECCCCcEEEeeecCCC
Q 005043 115 DVQVLNFDRFSWTAASSKLYLSPSSLPLKIPACRGHSLISWGKKVLLVGGKTDSGSDRVSVWTFDTETECWSVVEAKGDI 194 (717)
Q Consensus 115 ~v~~yd~~t~~W~~l~~~~~~~~~~~~~~~p~r~~hs~v~~~~~Iyv~GG~~~~~~~~~~v~~yD~~t~~W~~l~~~g~~ 194 (717)
++|++|+.+..-..+... +.........-+++.++++...........+|++|..++.-..+......
T Consensus 34 ~l~~~~~~gg~~~~lt~~------------~~~v~~~~~SPDG~~la~~s~~~~~~~~~~i~~~d~~~g~~~~lt~~~~~ 101 (1045)
T 1k32_A 34 DLWEHDLKSGSTRKIVSN------------LGVINNARFFPDGRKIAIRVMRGSSLNTADLYFYNGENGEIKRITYFSGK 101 (1045)
T ss_dssp EEEEEETTTCCEEEEECS------------SSEEEEEEECTTSSEEEEEEEESTTCCEEEEEEEETTTTEEEECCCCCEE
T ss_pred cEEEEECCCCcEEEeeeC------------CCcccCeEECCCCCEEEEEEeeccCCCCCeEEEEECCCCCeEEcccCCCc
Confidence 799999988877666541 11111122222565555554321112235799999998876555421100
Q ss_pred CCCce-e-eEEEEE-CCEEEEEccccCCCCCcCcEEEEEcCCCceEeccCCCCCCCCCcccEEEEECCcEEEEEcCCCC-
Q 005043 195 PVARS-G-HTVVRA-SSVLILFGGEDGKRRKLNDLHMFDLKSLTWLPLHCTGTGPSPRSNHVAALYDDKNLLIFGGSSK- 270 (717)
Q Consensus 195 P~~R~-~-hs~~~~-~~~Lyv~GG~~~~~~~~~~v~~yD~~t~~W~~l~~~g~~P~~R~~~aa~~~~~~~lyV~GG~~~- 270 (717)
...|. . ..++.. ++++++.++.+........+|.+|+.+.....+. ..+. ....... . +++.|....
T Consensus 102 ~~~~~~~~~~~~~SpDg~ll~~~~~~~~~~~~~~l~~~~~~~g~~~~l~---~~~~----~~~~~sp-G-~l~~~~~~~~ 172 (1045)
T 1k32_A 102 STGRRMFTDVAGFDPDGNLIISTDAMQPFSSMTCLYRVENDGINFVPLN---LGPA----THILFAD-G-RRVIGRNTFE 172 (1045)
T ss_dssp EETTEECSEEEEECTTCCEEEEECTTSSSTTCCEEEEEEGGGTEEEECC---SCSC----SEEEEET-T-EEEEEESCSC
T ss_pred ccccccccccccCCCCCEEEEEECCcCCCcccceEEEEECCCCCeEEec---CCCc----ceeeeCC-C-EEEEeccCCC
Confidence 00010 0 222232 5666666554432223457999999888776664 2121 1223334 3 445543211
Q ss_pred --------CCCCCeEEEEECCCCcEEEeecCCCCCCCCcceEEEEECCEEEEEecCCCCCccCeEEEEECCCCcEEEee
Q 005043 271 --------SKTLNDLYSLDFETMIWTRIKIRGFHPSPRAGCCGVLCGTKWYIAGGGSRKKRHAETLIFDILKGEWSVAI 341 (717)
Q Consensus 271 --------~~~~ndv~~yd~~t~~W~~v~~~g~~P~~R~~~sav~~~~~IyV~GG~~~~~~~~dv~~yD~~t~~W~~l~ 341 (717)
.....++|.++.. .....+.. ......+.+..++++++.++.++ ...+|.+++.+.....+.
T Consensus 173 ~~~~~~~~g~~~~~lw~~~~~-~~~~~l~~-----~~~~v~~~~~s~d~l~~~~~~dg---~~~l~~~~~~g~~~~~l~ 242 (1045)
T 1k32_A 173 LPHWKGYRGGTRGKIWIEVNS-GAFKKIVD-----MSTHVSSPVIVGHRIYFITDIDG---FGQIYSTDLDGKDLRKHT 242 (1045)
T ss_dssp CTTSTTCCSTTCCEEEEEEET-TEEEEEEC-----CSSCCEEEEEETTEEEEEECTTS---SCEEEEEETTSCSCEECC
T ss_pred ccccccccCCCcCCEEEECCC-CCeEECcC-----CCCcccceEEeCCEEEEEEeccC---ceEEEEEeCCCCcceEec
Confidence 1234568876655 67777632 22233344445778887776432 357899998776655553
No 248
>2ghs_A AGR_C_1268P; regucalcin, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; 1.55A {Agrobacterium tumefaciens str} SCOP: b.68.6.1
Probab=89.08 E-value=13 Score=38.17 Aligned_cols=145 Identities=10% Similarity=0.015 Sum_probs=77.8
Q ss_pred CCEEEEEeccCCCCCCceEEEEEECCCCcEEEeeecCCCCCCceeeEEE-EECCEEEEEccccCCCCCcCcEEEEEcCCC
Q 005043 156 GKKVLLVGGKTDSGSDRVSVWTFDTETECWSVVEAKGDIPVARSGHTVV-RASSVLILFGGEDGKRRKLNDLHMFDLKSL 234 (717)
Q Consensus 156 ~~~Iyv~GG~~~~~~~~~~v~~yD~~t~~W~~l~~~g~~P~~R~~hs~~-~~~~~Lyv~GG~~~~~~~~~~v~~yD~~t~ 234 (717)
++.+|+++... ..+++||+.++....+. .+. . -++++ .-++.+|+... ..+++||+.+.
T Consensus 60 ~~~l~~~d~~~------~~i~~~d~~~~~~~~~~----~~~-~-v~~i~~~~dg~l~v~~~--------~gl~~~d~~~g 119 (326)
T 2ghs_A 60 SGTAWWFNILE------RELHELHLASGRKTVHA----LPF-M-GSALAKISDSKQLIASD--------DGLFLRDTATG 119 (326)
T ss_dssp TTEEEEEEGGG------TEEEEEETTTTEEEEEE----CSS-C-EEEEEEEETTEEEEEET--------TEEEEEETTTC
T ss_pred CCEEEEEECCC------CEEEEEECCCCcEEEEE----CCC-c-ceEEEEeCCCeEEEEEC--------CCEEEEECCCC
Confidence 36788886542 26999999988766554 222 1 22233 34678887531 34999999998
Q ss_pred ceEeccCCCC-CCCCCcccEEEEECCcEEEEEcC-CCCCCCCCeEEEEECCCCcEEEeecCCCCCCCCcceEEEEE-CC-
Q 005043 235 TWLPLHCTGT-GPSPRSNHVAALYDDKNLLIFGG-SSKSKTLNDLYSLDFETMIWTRIKIRGFHPSPRAGCCGVLC-GT- 310 (717)
Q Consensus 235 ~W~~l~~~g~-~P~~R~~~aa~~~~~~~lyV~GG-~~~~~~~ndv~~yd~~t~~W~~v~~~g~~P~~R~~~sav~~-~~- 310 (717)
++..+..... .+..+. ..++...+..+|+... .........+++|+ ++....+... .. ...+.+.. ++
T Consensus 120 ~~~~~~~~~~~~~~~~~-~~i~~d~~G~l~v~~~~~~~~~~~~~l~~~~--~g~~~~~~~~----~~-~~~~i~~s~dg~ 191 (326)
T 2ghs_A 120 VLTLHAELESDLPGNRS-NDGRMHPSGALWIGTMGRKAETGAGSIYHVA--KGKVTKLFAD----IS-IPNSICFSPDGT 191 (326)
T ss_dssp CEEEEECSSTTCTTEEE-EEEEECTTSCEEEEEEETTCCTTCEEEEEEE--TTEEEEEEEE----ES-SEEEEEECTTSC
T ss_pred cEEEEeeCCCCCCCCCC-CCEEECCCCCEEEEeCCCcCCCCceEEEEEe--CCcEEEeeCC----Cc-ccCCeEEcCCCC
Confidence 8876642111 111111 1233333333666321 11112235799999 5666655321 01 11233332 34
Q ss_pred EEEEEecCCCCCccCeEEEEECC
Q 005043 311 KWYIAGGGSRKKRHAETLIFDIL 333 (717)
Q Consensus 311 ~IyV~GG~~~~~~~~dv~~yD~~ 333 (717)
.+|+..... ..+++||+.
T Consensus 192 ~lyv~~~~~-----~~I~~~d~~ 209 (326)
T 2ghs_A 192 TGYFVDTKV-----NRLMRVPLD 209 (326)
T ss_dssp EEEEEETTT-----CEEEEEEBC
T ss_pred EEEEEECCC-----CEEEEEEcc
Confidence 678775432 469999975
No 249
>4h5i_A Guanine nucleotide-exchange factor SEC12; copii vesicle budding, potassium binding site, beta propelle protein transport; 1.36A {Saccharomyces cerevisiae} PDB: 4h5j_A
Probab=88.83 E-value=24 Score=36.60 Aligned_cols=144 Identities=14% Similarity=0.037 Sum_probs=74.6
Q ss_pred CcEEEEEcCCCceEeccCCCCCCCCCcccEEEEECCcEEEEEcCCCCCCCCCeEEEEECCCCcEEEeecCCCCCCCCcce
Q 005043 224 NDLHMFDLKSLTWLPLHCTGTGPSPRSNHVAALYDDKNLLIFGGSSKSKTLNDLYSLDFETMIWTRIKIRGFHPSPRAGC 303 (717)
Q Consensus 224 ~~v~~yD~~t~~W~~l~~~g~~P~~R~~~aa~~~~~~~lyV~GG~~~~~~~ndv~~yd~~t~~W~~v~~~g~~P~~R~~~ 303 (717)
..+.++|+.+.+....- .. ...-.+++...+..+++.|+. +.+.+++..++........ .......
T Consensus 157 ~~i~iwd~~~~~~~~~~---~~--~~~V~~v~fspdg~~l~s~s~------~~~~~~~~~~~~~~~~~~~---~~~~~~v 222 (365)
T 4h5i_A 157 AIMRIIDPSDLTEKFEI---ET--RGEVKDLHFSTDGKVVAYITG------SSLEVISTVTGSCIARKTD---FDKNWSL 222 (365)
T ss_dssp CEEEEEETTTTEEEEEE---EC--SSCCCEEEECTTSSEEEEECS------SCEEEEETTTCCEEEEECC---CCTTEEE
T ss_pred CEEEEeECCCCcEEEEe---CC--CCceEEEEEccCCceEEeccc------eeEEEEEeccCcceeeeec---CCCCCCE
Confidence 45888999887654331 11 111223444444435665543 3478888877765543322 1111112
Q ss_pred E--EEEECCEEEEEecCCCCCccCeEEEEECCCCcEEEeecCCCCCCCCCcceEEEEEEeCCCcEEEEEcCCCCCCCCeE
Q 005043 304 C--GVLCGTKWYIAGGGSRKKRHAETLIFDILKGEWSVAITSPSSSVTSNKGFTLVLVQHKEKDFLVAFGGIKKEPSNQV 381 (717)
Q Consensus 304 s--av~~~~~IyV~GG~~~~~~~~dv~~yD~~t~~W~~l~~~p~~~~~~r~g~s~v~v~~~~~~~I~v~GG~~~~~~n~v 381 (717)
. +..-+++.++.++.++.. ...++.+|.....+........ ........++.+. .++.+++.|+.++ .|
T Consensus 223 ~~v~fspdg~~l~~~s~d~~~-~~~i~~~~~~~~~~~~~~~~~~--~~~~~~V~~~~~S--pdg~~lasgs~D~----~V 293 (365)
T 4h5i_A 223 SKINFIADDTVLIAASLKKGK-GIVLTKISIKSGNTSVLRSKQV--TNRFKGITSMDVD--MKGELAVLASNDN----SI 293 (365)
T ss_dssp EEEEEEETTEEEEEEEESSSC-CEEEEEEEEETTEEEEEEEEEE--ESSCSCEEEEEEC--TTSCEEEEEETTS----CE
T ss_pred EEEEEcCCCCEEEEEecCCcc-eeEEeecccccceecceeeeee--cCCCCCeEeEEEC--CCCCceEEEcCCC----EE
Confidence 2 223478888888755431 1246677776666544321100 0111223344443 3556778888753 58
Q ss_pred EEEEccCCc
Q 005043 382 EVLSIEKNE 390 (717)
Q Consensus 382 ~vyd~~~~e 390 (717)
.+||..+.+
T Consensus 294 ~iwd~~~~~ 302 (365)
T 4h5i_A 294 ALVKLKDLS 302 (365)
T ss_dssp EEEETTTTE
T ss_pred EEEECCCCc
Confidence 889987765
No 250
>1c1g_A Tropomyosin; contractIle protein; 7.00A {Sus scrofa} SCOP: h.1.5.1 PDB: 2tma_A 2w49_A 2w4u_A
Probab=88.69 E-value=0.68 Score=46.02 Aligned_cols=42 Identities=12% Similarity=0.146 Sum_probs=16.0
Q ss_pred HHHHHHHHHHHhhhhccchhhccccceeeEEEeehhhhhhhh
Q 005043 662 LKAVLDDTQKELHSTRGVLAGERARAFQLQVEVFHLKQRLQS 703 (717)
Q Consensus 662 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 703 (717)
+..-+.+.+.++...+.-+..-+.+.=.+++++-++..+|.+
T Consensus 242 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~ 283 (284)
T 1c1g_A 242 AERSVTKLEKSIDDLEDELYAQKLKYKAISEELDHALNDMTS 283 (284)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 333333333333333333333333333334444444444443
No 251
>2fp8_A Strictosidine synthase; six bladed beta propeller fold, lyase; 2.30A {Rauvolfia serpentina} PDB: 2fp9_A* 2fpc_A* 2vaq_A* 3v1s_A* 2fpb_A* 2v91_A*
Probab=88.45 E-value=23 Score=35.88 Aligned_cols=208 Identities=11% Similarity=-0.002 Sum_probs=104.1
Q ss_pred eEEEEE--CCEEEEEeccCCCCCCceEEEEEECCCCcEEEeeecCCCCCCceeeEEEEE--CCEEEEEccccCC------
Q 005043 150 HSLISW--GKKVLLVGGKTDSGSDRVSVWTFDTETECWSVVEAKGDIPVARSGHTVVRA--SSVLILFGGEDGK------ 219 (717)
Q Consensus 150 hs~v~~--~~~Iyv~GG~~~~~~~~~~v~~yD~~t~~W~~l~~~g~~P~~R~~hs~~~~--~~~Lyv~GG~~~~------ 219 (717)
++++.. ++.|||.... ..+++||+.++..+.+.....-........+++. ++.||+.-.....
T Consensus 83 ~gi~~~~~~g~l~v~d~~-------~~i~~~d~~~g~~~~~~~~~~~~~~~~p~~i~~d~~~G~l~v~d~~~~~~~~~~~ 155 (322)
T 2fp8_A 83 YDISYNLQNNQLYIVDCY-------YHLSVVGSEGGHATQLATSVDGVPFKWLYAVTVDQRTGIVYFTDVSTLYDDRGVQ 155 (322)
T ss_dssp EEEEEETTTTEEEEEETT-------TEEEEECTTCEECEEEESEETTEECSCEEEEEECTTTCCEEEEESCSSCCTTCHH
T ss_pred ceEEEcCCCCcEEEEECC-------CCEEEEeCCCCEEEEecccCCCCcccccceEEEecCCCEEEEECCcccccccccc
Confidence 455555 5789987432 1488999887765554321000111122334443 5688886322100
Q ss_pred -----CCCcCcEEEEEcCCCceEeccCCCCCCCCCcccEEEEEC-CcEEEEEcCCCCCCCCCeEEEEECCC---CcEEEe
Q 005043 220 -----RRKLNDLHMFDLKSLTWLPLHCTGTGPSPRSNHVAALYD-DKNLLIFGGSSKSKTLNDLYSLDFET---MIWTRI 290 (717)
Q Consensus 220 -----~~~~~~v~~yD~~t~~W~~l~~~g~~P~~R~~~aa~~~~-~~~lyV~GG~~~~~~~ndv~~yd~~t---~~W~~v 290 (717)
......+++||+.+.....+.. .+..| ...+... ++.|||.-.. .+.|++|++.+ ..++.+
T Consensus 156 ~~~~~~~~~g~v~~~d~~~~~~~~~~~--~~~~p---~gia~~~dg~~lyv~d~~-----~~~I~~~~~~~~~~~~~~~~ 225 (322)
T 2fp8_A 156 QIMDTSDKTGRLIKYDPSTKETTLLLK--ELHVP---GGAEVSADSSFVLVAEFL-----SHQIVKYWLEGPKKGTAEVL 225 (322)
T ss_dssp HHHHHTCCCEEEEEEETTTTEEEEEEE--EESCC---CEEEECTTSSEEEEEEGG-----GTEEEEEESSSTTTTCEEEE
T ss_pred eehcccCCCceEEEEeCCCCEEEEecc--CCccC---cceEECCCCCEEEEEeCC-----CCeEEEEECCCCcCCccceE
Confidence 0123569999998877654421 11111 1233333 3457776322 24699999875 345444
Q ss_pred ecCCCCCCCCcceEEEEE-CCEEEEEecCCCC-----CccCeEEEEECCCCcEEEeecCCCCCCCCCcceEEEEEEeCCC
Q 005043 291 KIRGFHPSPRAGCCGVLC-GTKWYIAGGGSRK-----KRHAETLIFDILKGEWSVAITSPSSSVTSNKGFTLVLVQHKEK 364 (717)
Q Consensus 291 ~~~g~~P~~R~~~sav~~-~~~IyV~GG~~~~-----~~~~dv~~yD~~t~~W~~l~~~p~~~~~~r~g~s~v~v~~~~~ 364 (717)
... +. -..++.. ++.|||....... .....+++||+....-..+.. +... .....+.+... +
T Consensus 226 ~~~---~g---P~gi~~d~~G~l~va~~~~~~~~~~~~~~~~v~~~d~~G~~~~~~~~-~~g~--~~~~~~~~~~~---~ 293 (322)
T 2fp8_A 226 VKI---PN---PGNIKRNADGHFWVSSSEELDGNMHGRVDPKGIKFDEFGNILEVIPL-PPPF--AGEHFEQIQEH---D 293 (322)
T ss_dssp EEC---SS---EEEEEECTTSCEEEEEEEETTSSTTSCEEEEEEEECTTSCEEEEEEC-CTTT--TTSCCCEEEEE---T
T ss_pred EeC---CC---CCCeEECCCCCEEEEecCcccccccCCCccEEEEECCCCCEEEEEEC-CCCC--ccccceEEEEe---C
Confidence 322 21 1233332 4678887643111 012458999997655555442 2111 01122223332 6
Q ss_pred cEEEEEcCCCCCCCCeEEEEEccCCc
Q 005043 365 DFLVAFGGIKKEPSNQVEVLSIEKNE 390 (717)
Q Consensus 365 ~~I~v~GG~~~~~~n~v~vyd~~~~e 390 (717)
+.||+.+.. .+.|.+|++..+.
T Consensus 294 g~L~v~~~~----~~~i~~~~~~~~~ 315 (322)
T 2fp8_A 294 GLLYIGTLF----HGSVGILVYDKKG 315 (322)
T ss_dssp TEEEEECSS----CSEEEEEEC----
T ss_pred CEEEEeecC----CCceEEEeccccc
Confidence 778876432 2478899886554
No 252
>2mad_H Methylamine dehydrogenase (heavy subunit); oxidoreductase(CHNH2(D)-deaminating); HET: TRQ; 2.25A {Paracoccus versutus} SCOP: b.69.2.1 PDB: 1mae_H* 1maf_H*
Probab=88.21 E-value=28 Score=36.63 Aligned_cols=119 Identities=13% Similarity=0.111 Sum_probs=59.1
Q ss_pred CCEEEEEeccCCCCCCceEEEEEECCCCcEEEeeecCCCCCCceeeEEEE-ECCEEEEEccccC---CCCCcCcEEEEEc
Q 005043 156 GKKVLLVGGKTDSGSDRVSVWTFDTETECWSVVEAKGDIPVARSGHTVVR-ASSVLILFGGEDG---KRRKLNDLHMFDL 231 (717)
Q Consensus 156 ~~~Iyv~GG~~~~~~~~~~v~~yD~~t~~W~~l~~~g~~P~~R~~hs~~~-~~~~Lyv~GG~~~---~~~~~~~v~~yD~ 231 (717)
+..+|+.-+.... ....+.+||+.+.+-... +|.....+-+.. .+..+|+..-... .+...+.+.+||+
T Consensus 32 ~~~~yv~~~~~~~--~~~~v~v~D~~t~~~~~~-----i~~g~~p~i~~spDg~~lyv~n~~~~~~~rg~~~~~v~viD~ 104 (373)
T 2mad_H 32 GRRSYINLPAHHS--AIIQQWVLDAGSGSILGH-----VNGGFLPNPVAAHSGSEFALASTSFSRIAKGKRTDYVEVFDP 104 (373)
T ss_pred CCEEEEeCCcccC--CccEEEEEECCCCeEEEE-----ecCCCCCCeEECCCCCEEEEEeccccccccCCCCCeEEEEEC
Confidence 3457777541111 111789999988764321 333322222222 3458888742211 1122467889999
Q ss_pred CCCceE-eccCCCC-----CCCCCcccEEEEECCcEEEEEcCCCCCCCCCeEEEEECCCCcEE
Q 005043 232 KSLTWL-PLHCTGT-----GPSPRSNHVAALYDDKNLLIFGGSSKSKTLNDLYSLDFETMIWT 288 (717)
Q Consensus 232 ~t~~W~-~l~~~g~-----~P~~R~~~aa~~~~~~~lyV~GG~~~~~~~ndv~~yd~~t~~W~ 288 (717)
.+.+-. .++..+. ...|+ ..+..-+++.+|+..-. ..+.|.++| .+++-.
T Consensus 105 ~t~~~~~~i~~~~~~~~~~g~~p~--~~~~spDG~~l~v~n~~----~~~~v~viD-~t~~~~ 160 (373)
T 2mad_H 105 VTFLPIADIELPDAPRFDVGPYSW--MNANTPNNADLLFFQFA----AGPAVGLVV-QGGSSD 160 (373)
T ss_pred CCCcEEEEEECCCccccccCCCcc--ceEECCCCCEEEEEecC----CCCeEEEEE-CCCCEE
Confidence 876432 2221100 01122 12223356667776321 135699999 887654
No 253
>3ott_A Two-component system sensor histidine kinase; beta-propeller, beta-sandwich, transcription; HET: TBR; 2.30A {Bacteroides thetaiotaomicron} PDB: 3va6_A
Probab=88.20 E-value=5.1 Score=46.61 Aligned_cols=166 Identities=10% Similarity=0.038 Sum_probs=89.7
Q ss_pred CCEEEEEcccCCCCCcccEEEEEcCCCceEEccccccCCCCCCCCCCCc-ccceEEEEE-CCEEEEEeccCCCCCCceEE
Q 005043 98 GNKMIVVGGESGNGLLDDVQVLNFDRFSWTAASSKLYLSPSSLPLKIPA-CRGHSLISW-GKKVLLVGGKTDSGSDRVSV 175 (717)
Q Consensus 98 ~~~lyV~GG~~~~~~~~~v~~yd~~t~~W~~l~~~~~~~~~~~~~~~p~-r~~hs~v~~-~~~Iyv~GG~~~~~~~~~~v 175 (717)
++.|||+||.. +.+++||+.++++...... .... ....+++.. ++.|++ |... -+
T Consensus 482 ~g~lWi~~~t~-----~Gl~~~d~~~~~~~~~~~~----------~~~~~~~~~~i~~d~~g~lWi-gt~~-------Gl 538 (758)
T 3ott_A 482 EGNVWVLLYNN-----KGIDKINPRTREVTKLFAD----------ELTGEKSPNYLLCDEDGLLWV-GFHG-------GV 538 (758)
T ss_dssp TSCEEEEETTC-----SSEEEEETTTTEEEEECTT----------TSCGGGCEEEEEECTTSCEEE-EETT-------EE
T ss_pred CCCEEEEccCC-----CCcEEEeCCCCceEEecCC----------CcCCCcccceEEECCCCCEEE-EecC-------ce
Confidence 46788876643 2489999999988876431 1111 112233333 467775 3321 38
Q ss_pred EEEECCCCcEEEeeecCCCCCCceeeEEEEECCEEEEEccccCCCCCcCcEEEEEcCCCceEeccCCCCCCCCCcccEEE
Q 005043 176 WTFDTETECWSVVEAKGDIPVARSGHTVVRASSVLILFGGEDGKRRKLNDLHMFDLKSLTWLPLHCTGTGPSPRSNHVAA 255 (717)
Q Consensus 176 ~~yD~~t~~W~~l~~~g~~P~~R~~hs~~~~~~~Lyv~GG~~~~~~~~~~v~~yD~~t~~W~~l~~~g~~P~~R~~~aa~ 255 (717)
.+||+.++.+..... ..+|.. .-.+++..++.||+.. .+.+.+||+.+.+..... +|......++.
T Consensus 539 ~~~~~~~~~~~~~~~-~gl~~~-~i~~i~~~~g~lWi~t--------~~Gl~~~~~~~~~~~~~~----~~~~~~~~~~~ 604 (758)
T 3ott_A 539 MRINPKDESQQSISF-GSFSNN-EILSMTCVKNSIWVST--------TNGLWIIDRKTMDARQQN----MTNKRFTSLLF 604 (758)
T ss_dssp EEECC--CCCCBCCC-CC---C-CEEEEEEETTEEEEEE--------SSCEEEEETTTCCEEEC------CCCCCSEEEE
T ss_pred EEEecCCCceEEecc-cCCCcc-ceEEEEECCCCEEEEC--------CCCeEEEcCCCceeEEec----CCCCceeeeEE
Confidence 999999888765532 224432 2334444578898864 144899999998877542 33333332222
Q ss_pred EECCcEEEEEcCCCCCCCCCeEEEEECCCCcEEEeecCCCCCCCCcceEEEEECCEEEE
Q 005043 256 LYDDKNLLIFGGSSKSKTLNDLYSLDFETMIWTRIKIRGFHPSPRAGCCGVLCGTKWYI 314 (717)
Q Consensus 256 ~~~~~~lyV~GG~~~~~~~ndv~~yd~~t~~W~~v~~~g~~P~~R~~~sav~~~~~IyV 314 (717)
...+. -+.|||.. -+..|+|+.- ... .+.|....+.+.++++-+.
T Consensus 605 ~~~~G-~l~fG~~~------Gl~~f~p~~~-----~~~--~~~~~v~it~~~v~~~~~~ 649 (758)
T 3ott_A 605 DPKED-CVYLGGAD------GFGISHSNLE-----ATY--QPERPILLTALYINNQLVS 649 (758)
T ss_dssp ETTTT-EEEEECBS------EEEEEEC--------CCC--CCCCCCEEEEEEETTEECC
T ss_pred ECCCC-cEEEecCC------ceEEEChhhc-----ccc--cCCCCEEEEEEEECCeEcC
Confidence 22355 45667754 4788998642 111 1334455555666666543
No 254
>3o4h_A Acylamino-acid-releasing enzyme; alpha/beta hydrolase fold, beta propeller, hydrolase, oligop SIZE selectivity; HET: GOL; 1.82A {Aeropyrum pernix} PDB: 3o4i_A 3o4j_A 2hu5_A* 1ve7_A* 1ve6_A* 2hu7_A* 3o4g_A 2hu8_A* 2qr5_A 2qzp_A
Probab=87.56 E-value=21 Score=39.49 Aligned_cols=201 Identities=8% Similarity=-0.027 Sum_probs=96.2
Q ss_pred EEEECCEEEEEeccCCCCCCceEEEEEECCCCcEEEeeecCCCCCCceeeEEEEECCEEEEEccccCCCCCcCcEEEEEc
Q 005043 152 LISWGKKVLLVGGKTDSGSDRVSVWTFDTETECWSVVEAKGDIPVARSGHTVVRASSVLILFGGEDGKRRKLNDLHMFDL 231 (717)
Q Consensus 152 ~v~~~~~Iyv~GG~~~~~~~~~~v~~yD~~t~~W~~l~~~g~~P~~R~~hs~~~~~~~Lyv~GG~~~~~~~~~~v~~yD~ 231 (717)
+...+++.+++++..+. ...+|. +.++.-..+.. .+ .....+.+...+++.+.+..... .....+|.+++
T Consensus 28 ~~~~DG~~la~~s~~~g---~~~lw~--~~~g~~~~lt~---~~-~~~~~~~~~spd~~l~~~~~~~g-~~~~~l~~~~~ 97 (582)
T 3o4h_A 28 QGVVDGDKLLVVGFSEG---SVNAYL--YDGGETVKLNR---EP-INSVLDPHYGVGRVILVRDVSKG-AEQHALFKVNT 97 (582)
T ss_dssp EEEETTTEEEEEEEETT---EEEEEE--EETTEEEECCS---SC-CSEECEECTTCSEEEEEEECSTT-SCCEEEEEEET
T ss_pred ecCCCCCeEEEEEccCC---ceeEEE--EcCCCcEeeec---cc-ccccccccCCCCeEEEEeccCCC-CcceEEEEEec
Confidence 33456666666554221 224554 45555444431 11 01122222223455554433111 12346777877
Q ss_pred --CCCceEeccCCCCCCCCCcccEEEEECCcEEEEEcCCCCCCCCCeEEEEECCCCcEEEeecCCCCCCCCcceEEEEEC
Q 005043 232 --KSLTWLPLHCTGTGPSPRSNHVAALYDDKNLLIFGGSSKSKTLNDLYSLDFETMIWTRIKIRGFHPSPRAGCCGVLCG 309 (717)
Q Consensus 232 --~t~~W~~l~~~g~~P~~R~~~aa~~~~~~~lyV~GG~~~~~~~ndv~~yd~~t~~W~~v~~~g~~P~~R~~~sav~~~ 309 (717)
....- .+. ..+.. ...+...+++.+++..+.. +.+.+||+.++....+... +. ...+..-+
T Consensus 98 ~~~g~~~-~l~---~~~~~--~~~~~s~dg~~~~~~s~~~-----~~~~l~d~~~g~~~~l~~~---~~---~~~~~spD 160 (582)
T 3o4h_A 98 SRPGEEQ-RLE---AVKPM--RILSGVDTGEAVVFTGATE-----DRVALYALDGGGLRELARL---PG---FGFVSDIR 160 (582)
T ss_dssp TSTTCCE-ECT---TSCSB--EEEEEEECSSCEEEEEECS-----SCEEEEEEETTEEEEEEEE---SS---CEEEEEEE
T ss_pred cCCCccc-ccc---CCCCc--eeeeeCCCCCeEEEEecCC-----CCceEEEccCCcEEEeecC---CC---ceEEECCC
Confidence 43322 332 12211 2334444554344444432 2345789988887777653 22 22223345
Q ss_pred CEEEEEecCCCCCccCeEEEEECCCCcEEEeecCCCCCCCCCcceEEEEEEeCCCcEEEEEcCCCCCCCCeEEEEEccCC
Q 005043 310 TKWYIAGGGSRKKRHAETLIFDILKGEWSVAITSPSSSVTSNKGFTLVLVQHKEKDFLVAFGGIKKEPSNQVEVLSIEKN 389 (717)
Q Consensus 310 ~~IyV~GG~~~~~~~~dv~~yD~~t~~W~~l~~~p~~~~~~r~g~s~v~v~~~~~~~I~v~GG~~~~~~n~v~vyd~~~~ 389 (717)
++.+++++.+.. ....++++|+.+..++.+...+ .......+. +++..|+ .+..++ ...++++|+.+.
T Consensus 161 G~~la~~~~~~~-~~~~i~~~d~~~g~~~~l~~~~-------~~~~~~~~S-pDG~~l~-~~~~~~--~~~i~~~d~~~~ 228 (582)
T 3o4h_A 161 GDLIAGLGFFGG-GRVSLFTSNLSSGGLRVFDSGE-------GSFSSASIS-PGMKVTA-GLETAR--EARLVTVDPRDG 228 (582)
T ss_dssp TTEEEEEEEEET-TEEEEEEEETTTCCCEEECCSS-------CEEEEEEEC-TTSCEEE-EEECSS--CEEEEEECTTTC
T ss_pred CCEEEEEEEcCC-CCeEEEEEcCCCCCceEeecCC-------CccccceEC-CCCCEEE-EccCCC--eeEEEEEcCCCC
Confidence 665555554322 1235999999999888764211 112333443 3334444 433322 347999998876
Q ss_pred cc
Q 005043 390 ES 391 (717)
Q Consensus 390 eW 391 (717)
+.
T Consensus 229 ~~ 230 (582)
T 3o4h_A 229 SV 230 (582)
T ss_dssp CE
T ss_pred cE
Confidence 53
No 255
>2p4o_A Hypothetical protein; putative lactonase, structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.90A {Nostoc punctiforme} SCOP: b.68.6.3
Probab=87.24 E-value=27 Score=35.25 Aligned_cols=183 Identities=14% Similarity=0.021 Sum_probs=88.9
Q ss_pred CCEEEEEcccCCCCCcccEEEEEcCCCceEEccccccCCCCCCCCCCCcccceEEEEE-CCEEEEEeccCCCCCCceEEE
Q 005043 98 GNKMIVVGGESGNGLLDDVQVLNFDRFSWTAASSKLYLSPSSLPLKIPACRGHSLISW-GKKVLLVGGKTDSGSDRVSVW 176 (717)
Q Consensus 98 ~~~lyV~GG~~~~~~~~~v~~yd~~t~~W~~l~~~~~~~~~~~~~~~p~r~~hs~v~~-~~~Iyv~GG~~~~~~~~~~v~ 176 (717)
++++||....... ..+++||+.+.+...+... + ..+.....+.. ++.+|+.-- ....+|
T Consensus 82 dG~l~vad~~~~~---~~v~~~d~~~g~~~~~~~~----------~-~~~~~~g~~~~~~~~~~v~d~------~~g~i~ 141 (306)
T 2p4o_A 82 NGDLVATGWNADS---IPVVSLVKSDGTVETLLTL----------P-DAIFLNGITPLSDTQYLTADS------YRGAIW 141 (306)
T ss_dssp TSCEEEEEECTTS---CEEEEEECTTSCEEEEEEC----------T-TCSCEEEEEESSSSEEEEEET------TTTEEE
T ss_pred CCcEEEEeccCCc---ceEEEEcCCCCeEEEEEeC----------C-CccccCcccccCCCcEEEEEC------CCCeEE
Confidence 4678887532211 2488899888887766541 1 12222333333 566777532 123799
Q ss_pred EEECCCCcEEE--eeecCC--CC--CCceeeEEEEECCEEEEEccccCCCCCcCcEEEEEcCC-CceEeccCCCCCCCCC
Q 005043 177 TFDTETECWSV--VEAKGD--IP--VARSGHTVVRASSVLILFGGEDGKRRKLNDLHMFDLKS-LTWLPLHCTGTGPSPR 249 (717)
Q Consensus 177 ~yD~~t~~W~~--l~~~g~--~P--~~R~~hs~~~~~~~Lyv~GG~~~~~~~~~~v~~yD~~t-~~W~~l~~~g~~P~~R 249 (717)
++|+.+..-+. ...... .+ .-.....+...++.||+.- ...+.+++||+.. .+............|
T Consensus 142 ~~d~~~~~~~v~~~~~~~~~~~~~~~~~~pngis~dg~~lyv~d------~~~~~I~~~~~~~~g~~~~~~~~~~~~~P- 214 (306)
T 2p4o_A 142 LIDVVQPSGSIWLEHPMLARSNSESVFPAANGLKRFGNFLYVSN------TEKMLLLRIPVDSTDKPGEPEIFVEQTNI- 214 (306)
T ss_dssp EEETTTTEEEEEEECGGGSCSSTTCCSCSEEEEEEETTEEEEEE------TTTTEEEEEEBCTTSCBCCCEEEEESCCC-
T ss_pred EEeCCCCcEeEEEECCccccccccCCCCcCCCcCcCCCEEEEEe------CCCCEEEEEEeCCCCCCCccEEEeccCCC-
Confidence 99998653221 111000 11 1112223334456888873 2346799999875 222111100011111
Q ss_pred cccEEEEECCcEEEEEcCCCCCCCCCeEEEEECCCCcEEEeecCCCCCCCCcceEEEEEC------CEEEEEecC
Q 005043 250 SNHVAALYDDKNLLIFGGSSKSKTLNDLYSLDFETMIWTRIKIRGFHPSPRAGCCGVLCG------TKWYIAGGG 318 (717)
Q Consensus 250 ~~~aa~~~~~~~lyV~GG~~~~~~~ndv~~yd~~t~~W~~v~~~g~~P~~R~~~sav~~~------~~IyV~GG~ 318 (717)
..+++-.+..+||.-.. .+.|.+||+. +....+... +.+-....++.++ +.|||....
T Consensus 215 --~gi~vd~dG~l~va~~~-----~~~V~~~~~~-G~~~~~~~~---~~~~~~p~~~a~~g~~~d~~~LyVt~~~ 278 (306)
T 2p4o_A 215 --DDFAFDVEGNLYGATHI-----YNSVVRIAPD-RSTTIIAQA---EQGVIGSTAVAFGQTEGDCTAIYVVTNG 278 (306)
T ss_dssp --SSEEEBTTCCEEEECBT-----TCCEEEECTT-CCEEEEECG---GGTCTTEEEEEECCSTTTTTEEEEEECT
T ss_pred --CCeEECCCCCEEEEeCC-----CCeEEEECCC-CCEEEEeec---ccccCCceEEEEecccCCCCEEEEECCC
Confidence 12344333347876432 2469999986 444433221 1222223333332 688887653
No 256
>1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A
Probab=87.14 E-value=42 Score=37.47 Aligned_cols=193 Identities=11% Similarity=0.033 Sum_probs=98.7
Q ss_pred EEEEEeccCCCCCCceEEEEEECCCCcEEEeeecCCCCCCceeeEEEEE-CCEEEEEccccCCCCCcCcEEEEEcCCCce
Q 005043 158 KVLLVGGKTDSGSDRVSVWTFDTETECWSVVEAKGDIPVARSGHTVVRA-SSVLILFGGEDGKRRKLNDLHMFDLKSLTW 236 (717)
Q Consensus 158 ~Iyv~GG~~~~~~~~~~v~~yD~~t~~W~~l~~~g~~P~~R~~hs~~~~-~~~Lyv~GG~~~~~~~~~~v~~yD~~t~~W 236 (717)
..++.||.+. .+..||..+.+....-. .....-.+++.. ++.+++.||.++ .+.+||..+.+.
T Consensus 161 ~~l~s~s~D~------~v~lwd~~~~~~~~~l~----~H~~~V~~v~fspdg~~las~s~D~------~i~lwd~~~g~~ 224 (611)
T 1nr0_A 161 FRIISGSDDN------TVAIFEGPPFKFKSTFG----EHTKFVHSVRYNPDGSLFASTGGDG------TIVLYNGVDGTK 224 (611)
T ss_dssp CEEEEEETTS------CEEEEETTTBEEEEEEC----CCSSCEEEEEECTTSSEEEEEETTS------CEEEEETTTCCE
T ss_pred eEEEEEeCCC------eEEEEECCCCeEeeeec----cccCceEEEEECCCCCEEEEEECCC------cEEEEECCCCcE
Confidence 3566777532 47788877654432210 111122233332 567888887654 378888877654
Q ss_pred EeccCCCCC---CCCCcccEEEEECCcEEEEEcCCCCCCCCCeEEEEECCCCcEEEeecCCCCCCCCcceEEEEECCEEE
Q 005043 237 LPLHCTGTG---PSPRSNHVAALYDDKNLLIFGGSSKSKTLNDLYSLDFETMIWTRIKIRGFHPSPRAGCCGVLCGTKWY 313 (717)
Q Consensus 237 ~~l~~~g~~---P~~R~~~aa~~~~~~~lyV~GG~~~~~~~ndv~~yd~~t~~W~~v~~~g~~P~~R~~~sav~~~~~Iy 313 (717)
...-....+ .....-.+++...+..+++.|+.++ .+..||+.+......-..+. ........+..++..+
T Consensus 225 ~~~~~~~~~~~~~h~~~V~~v~~spdg~~l~s~s~D~-----~v~lWd~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~l 297 (611)
T 1nr0_A 225 TGVFEDDSLKNVAHSGSVFGLTWSPDGTKIASASADK-----TIKIWNVATLKVEKTIPVGT--RIEDQQLGIIWTKQAL 297 (611)
T ss_dssp EEECBCTTSSSCSSSSCEEEEEECTTSSEEEEEETTS-----EEEEEETTTTEEEEEEECCS--SGGGCEEEEEECSSCE
T ss_pred eeeeccccccccccCCCEEEEEECCCCCEEEEEeCCC-----eEEEEeCCCCceeeeecCCC--CccceeEEEEEcCCEE
Confidence 322100000 1111122333343433677777653 58999998877654432211 1111222334466777
Q ss_pred EEecCCCCCccCeEEEEECCCCcEEEeecCCCCCCCCCcceEEEEEEeCCCcEEEEEcCCCCCCCCeEEEEEccCCc
Q 005043 314 IAGGGSRKKRHAETLIFDILKGEWSVAITSPSSSVTSNKGFTLVLVQHKEKDFLVAFGGIKKEPSNQVEVLSIEKNE 390 (717)
Q Consensus 314 V~GG~~~~~~~~dv~~yD~~t~~W~~l~~~p~~~~~~r~g~s~v~v~~~~~~~I~v~GG~~~~~~n~v~vyd~~~~e 390 (717)
+.++.++ .+..||+.+..-.... .. -......+.+. .++..++.|+.++ .|.+||+.+.+
T Consensus 298 ~s~s~d~-----~i~~~~~~~~~~~~~~--~g----h~~~v~~l~~s--pdg~~l~s~s~D~----~v~~Wd~~~~~ 357 (611)
T 1nr0_A 298 VSISANG-----FINFVNPELGSIDQVR--YG----HNKAITALSSS--ADGKTLFSADAEG----HINSWDISTGI 357 (611)
T ss_dssp EEEETTC-----CEEEEETTTTEEEEEE--CC----CSSCEEEEEEC--TTSSEEEEEETTS----CEEEEETTTCC
T ss_pred EEEeCCC-----cEEEEeCCCCCcceEE--cC----CCCCEEEEEEe--CCCCEEEEEeCCC----cEEEEECCCCc
Confidence 7777654 3788888776533322 11 11122333333 2444566776643 57888887654
No 257
>3u1c_A Tropomyosin alpha-1 chain; anti-parallel coiled coil, contractIle protein; 1.80A {Gallus gallus} PDB: 3u1a_A
Probab=86.65 E-value=2 Score=37.13 Aligned_cols=58 Identities=14% Similarity=0.194 Sum_probs=33.5
Q ss_pred HHHHHHHHHHHhcchhHHHHHHHhhHHHHHhhhhhHHhhHHHHHHHHHHHHHHHHHHH
Q 005043 571 YESKMAALIRKNGILEGQLAAALVNREAAEKNFSSVLKSRQEMEKKLADSLKEMELLK 628 (717)
Q Consensus 571 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 628 (717)
.+..+++|-+|+..||.+|+.+......+-.+|...-+.++++|..++...+-+.+|.
T Consensus 42 ~E~Ei~sL~kk~~~lE~eld~~ee~L~ea~~kLee~ek~~~~aE~ev~~L~RriqllE 99 (101)
T 3u1c_A 42 LEDDIVQLEKQLRVTEDSRDQVLEELHKSEDSLLFAEENAAKAESEVASLNRRIQLVE 99 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 4556666666776676666666555555555555555555555555555555554443
No 258
>1pex_A Collagenase-3, MMP-13; C-terminal hemopexin-like domain of matrix- metalloproteinase, metalloprotease; 2.70A {Homo sapiens} SCOP: b.66.1.1
Probab=86.19 E-value=13 Score=36.16 Aligned_cols=154 Identities=14% Similarity=0.097 Sum_probs=77.8
Q ss_pred EEEEECCEEEEEccccCCCCCcCcEEEEEcCCCceEeccC---CCCCCCCCcccEEEEEC-CcEEEEEcCCCCCCCCCeE
Q 005043 202 TVVRASSVLILFGGEDGKRRKLNDLHMFDLKSLTWLPLHC---TGTGPSPRSNHVAALYD-DKNLLIFGGSSKSKTLNDL 277 (717)
Q Consensus 202 s~~~~~~~Lyv~GG~~~~~~~~~~v~~yD~~t~~W~~l~~---~g~~P~~R~~~aa~~~~-~~~lyV~GG~~~~~~~ndv 277 (717)
+++..++.+|+|=| ..+|+++.....+..... -..+|. .... +.... +..+|+|-|. .+
T Consensus 28 Ai~~~~g~~y~Fkg--------~~~wr~~~~~~~~~p~~I~~~wp~Lp~-~iDA-a~~~~~~~~iyfFkG~-------~~ 90 (207)
T 1pex_A 28 AITSLRGETMIFKD--------RFFWRLHPQQVDAELFLTKSFWPELPN-RIDA-AYEHPSHDLIFIFRGR-------KF 90 (207)
T ss_dssp EEEEETTEEEEEET--------TEEEEECSSSSCCEEEEHHHHCTTSCS-SCCE-EEEETTTTEEEEEETT-------EE
T ss_pred EEEeCCCcEEEEEC--------CEEEEEeCCCcCCCceehhHhccCCCC-CccE-EEEeccCCcEEEEccC-------EE
Confidence 45557899999954 346777654433321110 013442 2232 33232 3348888773 57
Q ss_pred EEEECCCCc---EEEeecCCCCCCCCcceEEEEE--CCEEEEEecCCCCCccCeEEEEECCCCcEEEeecCCCCC----C
Q 005043 278 YSLDFETMI---WTRIKIRGFHPSPRAGCCGVLC--GTKWYIAGGGSRKKRHAETLIFDILKGEWSVAITSPSSS----V 348 (717)
Q Consensus 278 ~~yd~~t~~---W~~v~~~g~~P~~R~~~sav~~--~~~IyV~GG~~~~~~~~dv~~yD~~t~~W~~l~~~p~~~----~ 348 (717)
|+|+-.+.. =..+...|.+..+..--+++.. ++++|+|-| +..|+||..+.+-. ...|... +
T Consensus 91 w~~~~~~~~~gyPk~I~~~GlP~~~~~IDAA~~~~~~gk~yfFkG-------~~ywr~d~~~~~~d--~gyPr~i~~~~~ 161 (207)
T 1pex_A 91 WALNGYDILEGYPKKISELGLPKEVKKISAAVHFEDTGKTLLFSG-------NQVWRYDDTNHIMD--KDYPRLIEEDFP 161 (207)
T ss_dssp EEESTTCCCTTCSEESTTTTCCTTCCCCCEEEECTTTSEEEEEET-------TEEEEEETTTTEEC--SSCCCBHHHHST
T ss_pred EEEeCCeeccCCceeccccCCCCCCccccEEEEeCCCCEEEEEeC-------CEEEEEeCcCcccc--CCCCccHHHcCC
Confidence 888643211 1223222221111122233333 489999998 56899998765311 1111110 0
Q ss_pred CCCcceEEEEEEeCCCcEEEEEcCCCCCCCCeEEEEEccCCc
Q 005043 349 TSNKGFTLVLVQHKEKDFLVAFGGIKKEPSNQVEVLSIEKNE 390 (717)
Q Consensus 349 ~~r~g~s~v~v~~~~~~~I~v~GG~~~~~~n~v~vyd~~~~e 390 (717)
......-++.. . ++.+|.|-|. ..|.||..+.+
T Consensus 162 Gip~~iDaAf~-~--~g~~YfFkg~------~y~rf~~~~~~ 194 (207)
T 1pex_A 162 GIGDKVDAVYE-K--NGYIYFFNGP------IQFEYSIWSNR 194 (207)
T ss_dssp TSCSCCSEEEE-E--TTEEEEEETT------EEEEEETTTTE
T ss_pred CCCCCccEEEE-c--CCcEEEEECC------EEEEEeCCccE
Confidence 00111223332 2 6789999885 78999987664
No 259
>1c1g_A Tropomyosin; contractIle protein; 7.00A {Sus scrofa} SCOP: h.1.5.1 PDB: 2tma_A 2w49_A 2w4u_A
Probab=86.17 E-value=0.68 Score=46.04 Aligned_cols=32 Identities=22% Similarity=0.144 Sum_probs=12.9
Q ss_pred HHHHHHHHHHhcchhHHHHHHHhhHHHHHhhh
Q 005043 572 ESKMAALIRKNGILEGQLAAALVNREAAEKNF 603 (717)
Q Consensus 572 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~ 603 (717)
+.||..+-.....+..+++......+++++.+
T Consensus 5 ~~~~~~l~~~~~~~~~~~~~l~~~l~~l~~~~ 36 (284)
T 1c1g_A 5 KKKMQMLKLDKENALDRADEAEADKKAAEDRS 36 (284)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444444333333333333
No 260
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=85.39 E-value=1 Score=60.47 Aligned_cols=25 Identities=12% Similarity=0.001 Sum_probs=11.5
Q ss_pred cchhHHHHHHHhhHHHHHhhhhhHH
Q 005043 583 GILEGQLAAALVNREAAEKNFSSVL 607 (717)
Q Consensus 583 ~~~~~~~~~~~~~~~~~e~~~~~~~ 607 (717)
+.++.|-+.+.+.|++||+.|+.|.
T Consensus 1983 ~~~~~~~~ei~~~k~~~e~dL~~A~ 2007 (3245)
T 3vkg_A 1983 VQLDVRNKEIAVQKVKAYADLEKAE 2007 (3245)
T ss_dssp HHHHHHHHHHHHHHHHHHHCC----
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhcC
Confidence 3444555555555666665555543
No 261
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus}
Probab=85.34 E-value=3.7 Score=50.13 Aligned_cols=47 Identities=15% Similarity=0.148 Sum_probs=33.6
Q ss_pred HHHHHhhHHHHHhhhhhHHhhHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 005043 589 LAAALVNREAAEKNFSSVLKSRQEMEKKLADSLKEMELLKEKLAGLE 635 (717)
Q Consensus 589 ~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 635 (717)
|..+..++++++.++.+..+..++++++++...+|.+.|+|+...++
T Consensus 972 le~~~~e~~~~~~~v~~L~~e~~~l~~~~~~~~ke~~~lee~~~~~~ 1018 (1080)
T 2dfs_A 972 LRMSEEEAKNATNRVLSLQEEIAKLRKELHQTQTEKKTIEEWADKYK 1018 (1080)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33346666677777777777777888888888888888877765553
No 262
>1xfd_A DIP, dipeptidyl aminopeptidase-like protein 6, dipeptidylpeptidase 6; DPPX, DPP6, KV4, KV, KAF, membrane protein; HET: NDG NAG BMA MAN; 3.00A {Homo sapiens} SCOP: b.70.3.1 c.69.1.24
Probab=85.31 E-value=32 Score=38.98 Aligned_cols=66 Identities=14% Similarity=0.058 Sum_probs=32.9
Q ss_pred cEEEEEcCCCce-EeccCCCCCC-CCCcccEEEEECCcEEEEEcCCCCCCCCCeEEEEECCCCcEEEee
Q 005043 225 DLHMFDLKSLTW-LPLHCTGTGP-SPRSNHVAALYDDKNLLIFGGSSKSKTLNDLYSLDFETMIWTRIK 291 (717)
Q Consensus 225 ~v~~yD~~t~~W-~~l~~~g~~P-~~R~~~aa~~~~~~~lyV~GG~~~~~~~ndv~~yd~~t~~W~~v~ 291 (717)
.++++|+.+.+- ..+....... ............+..++++.... ......++.+|+.++....+.
T Consensus 229 ~l~~~d~~~~~~~~~l~~~~~~~~~~~~~~~~~~SpDg~~l~~~~~~-~~~~~~i~~~d~~~g~~~~~~ 296 (723)
T 1xfd_A 229 SLHVIGLNGPTHDLEMMPPDDPRMREYYITMVKWATSTKVAVTWLNR-AQNVSILTLCDATTGVCTKKH 296 (723)
T ss_dssp EEEEEESSSSCCCEECCCCCCGGGSSEEEEEEEESSSSEEEEEEEET-TSCEEEEEEEETTTCCEEEEE
T ss_pred EEEEEECCCCceeEEeeCCccCCCccceeEEEEEeCCCeEEEEEEcC-CCCeEEEEEEeCCCCcceEEE
Confidence 788999987763 4443100000 01111223333444344443221 122356899999988876653
No 263
>3c75_H MADH, methylamine dehydrogenase heavy chain; copper proteins, electron transfer complex, TTQ, electron transport, oxidoreductase, periplasm, transport, metal- binding; HET: TRQ; 2.50A {Paracoccus versutus}
Probab=85.18 E-value=36 Score=36.83 Aligned_cols=121 Identities=14% Similarity=0.102 Sum_probs=63.3
Q ss_pred CCEEEEEeccCCCCCCceEEEEEECCCCcEEEeeecCCCCCCceeeEEEE--ECCEEEEEcccc---CCCCCcCcEEEEE
Q 005043 156 GKKVLLVGGKTDSGSDRVSVWTFDTETECWSVVEAKGDIPVARSGHTVVR--ASSVLILFGGED---GKRRKLNDLHMFD 230 (717)
Q Consensus 156 ~~~Iyv~GG~~~~~~~~~~v~~yD~~t~~W~~l~~~g~~P~~R~~hs~~~--~~~~Lyv~GG~~---~~~~~~~~v~~yD 230 (717)
.+.+||.-...... .+.|.++|+.+.+-...-+.|.. . .+++ .+..+|+.--.. ..+...+.+.+||
T Consensus 84 ~~~vyV~n~~~~~~--~~~VsVID~~t~~vv~~I~vG~~-----P-gia~SpDgk~lyVan~~~~~~~~G~~~~~VsviD 155 (426)
T 3c75_H 84 ARRVYIQDPAHFAA--ITQQFVIDGSTGRILGMTDGGFL-----P-HPVAAEDGSFFAQASTVFERIARGKRTDYVEVFD 155 (426)
T ss_dssp TTEEEEEECTTTCS--SEEEEEEETTTTEEEEEEEECSS-----C-EEEECTTSSCEEEEEEEEEETTEEEEEEEEEEEC
T ss_pred CCEEEEECCCcCCC--CCeEEEEECCCCEEEEEEECCCC-----C-ceEECCCCCEEEEEeccccccccCCCCCEEEEEE
Confidence 45678875432111 16899999999875433222322 2 2333 245788873110 0011236799999
Q ss_pred cCCCceEe-ccCCCCCC---CCCcccEEEEECCcEEEEEcCCCCCCCCCeEEEEECCCCcEE
Q 005043 231 LKSLTWLP-LHCTGTGP---SPRSNHVAALYDDKNLLIFGGSSKSKTLNDLYSLDFETMIWT 288 (717)
Q Consensus 231 ~~t~~W~~-l~~~g~~P---~~R~~~aa~~~~~~~lyV~GG~~~~~~~ndv~~yd~~t~~W~ 288 (717)
+.+.+-.. +...+... ...-...+..-+++++||..-. ..+.|.++|+.+++-.
T Consensus 156 ~~t~~vv~~I~v~g~~r~~~g~~P~~~~~spDGk~lyV~n~~----~~~~VsVID~~t~kvv 213 (426)
T 3c75_H 156 PVTFLPIADIELPDAPRFLVGTYQWMNALTPDNKNLLFYQFS----PAPAVGVVDLEGKTFD 213 (426)
T ss_dssp TTTCCEEEEEEETTCCCCCBSCCGGGSEECTTSSEEEEEECS----SSCEEEEEETTTTEEE
T ss_pred CCCCcEEEEEECCCccccccCCCcceEEEcCCCCEEEEEecC----CCCeEEEEECCCCeEE
Confidence 99886432 22110000 0111222333456678886421 1357999999887643
No 264
>2gop_A Trilobed protease; beta propeller, open velcro, hydrolase; 2.00A {Pyrococcus furiosus}
Probab=85.10 E-value=34 Score=34.44 Aligned_cols=187 Identities=12% Similarity=0.067 Sum_probs=97.3
Q ss_pred CcccEEEEEcCCCceEEccccccCCCCCCCCCCCcccceEEEEE-CCEEEEEeccCCCCCCceEEEEEECCCCcEEEeee
Q 005043 112 LLDDVQVLNFDRFSWTAASSKLYLSPSSLPLKIPACRGHSLISW-GKKVLLVGGKTDSGSDRVSVWTFDTETECWSVVEA 190 (717)
Q Consensus 112 ~~~~v~~yd~~t~~W~~l~~~~~~~~~~~~~~~p~r~~hs~v~~-~~~Iyv~GG~~~~~~~~~~v~~yD~~t~~W~~l~~ 190 (717)
....+|++|+.+..-..+.. ....... +++.+++..... +.....+|++|+.++....+..
T Consensus 41 ~~~~l~~~d~~~~~~~~l~~-----------------~~~~~~SpDg~~la~~~~~~-~~~~~~l~~~~~~~g~~~~l~~ 102 (347)
T 2gop_A 41 YENTIVIENLKNNARRFIEN-----------------ATMPRISPDGKKIAFMRANE-EKKVSEIWVADLETLSSKKILE 102 (347)
T ss_dssp EEEEEEEEETTTCCEEEEES-----------------CEEEEECTTSSEEEEEEEET-TTTEEEEEEEETTTTEEEEEEE
T ss_pred ccceEEEEeCCCCceEEccc-----------------CCCeEECCCCCEEEEEEecc-CCCcceEEEEECCCCceEEEEc
Confidence 35678999998876554411 1112221 343333333221 1124479999999988777653
Q ss_pred cCCCCCCceeeEEEEE-CCEEEEEccccC----------------CC-----CCcCcEEEEEcCCCce-EeccCCCCCCC
Q 005043 191 KGDIPVARSGHTVVRA-SSVLILFGGEDG----------------KR-----RKLNDLHMFDLKSLTW-LPLHCTGTGPS 247 (717)
Q Consensus 191 ~g~~P~~R~~hs~~~~-~~~Lyv~GG~~~----------------~~-----~~~~~v~~yD~~t~~W-~~l~~~g~~P~ 247 (717)
.+. ....+.. +++.++++.... .+ .....++++|+.++.. ..+. . +
T Consensus 103 ---~~~---~~~~~wspdg~~l~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~l~---~-~- 171 (347)
T 2gop_A 103 ---AKN---IRSLEWNEDSRKLLIVGFKRREDEDFIFEDDVPAWFDDLGFFDGEKTTFWIFDTESEEVIEEFE---K-P- 171 (347)
T ss_dssp ---ESE---EEEEEECTTSSEEEEEEECCCC---------CCCC---------CEEEEEEEETTTTEEEEEEE---E-E-
T ss_pred ---CCC---ccceeECCCCCEEEEEEccCCCcCCcEEEcccceeecCcccccCccceEEEEECCCCeEEeeec---C-C-
Confidence 221 2223332 454444443210 00 1135699999998887 6664 2 2
Q ss_pred CCcccEEEEECCcEEEEEcCCCCCC---C-CCeEEEEECCCCcEEEeecCCCCCCCCcceEEEEECCEEEEEecCCC---
Q 005043 248 PRSNHVAALYDDKNLLIFGGSSKSK---T-LNDLYSLDFETMIWTRIKIRGFHPSPRAGCCGVLCGTKWYIAGGGSR--- 320 (717)
Q Consensus 248 ~R~~~aa~~~~~~~lyV~GG~~~~~---~-~ndv~~yd~~t~~W~~v~~~g~~P~~R~~~sav~~~~~IyV~GG~~~--- 320 (717)
.....+...+. +++.+...... . ...+|.+| ++.+..+... .......-+++.+++++...
T Consensus 172 --~~~~~~~spdg-~~~~~~~~~~~~~~~~~~~l~~~d--~~~~~~l~~~-------~~~~~~spdg~~l~~~~~~~~~~ 239 (347)
T 2gop_A 172 --RFSSGIWHRDK-IVVNVPHREIIPQYFKFWDIYIWE--DGKEEKMFEK-------VSFYAVDSDGERILLYGKPEKKY 239 (347)
T ss_dssp --TTCEEEEETTE-EEEEEECCCSSCCSSCCEEEEEEE--TTEEEEEEEE-------ESEEEEEECSSCEEEEECCSSSC
T ss_pred --CcccccCCCCe-EEEEEecccccccccccccEEEeC--CCceEEeccC-------cceeeECCCCCEEEEEEccccCC
Confidence 23344555666 55555443221 2 45789999 7777776531 11222244555444443322
Q ss_pred CCccCeEEEEECCCCcEEEee
Q 005043 321 KKRHAETLIFDILKGEWSVAI 341 (717)
Q Consensus 321 ~~~~~dv~~yD~~t~~W~~l~ 341 (717)
......+|.+| +..+..+.
T Consensus 240 ~~~~~~l~~~d--~~~~~~l~ 258 (347)
T 2gop_A 240 MSEHNKLYIYD--GKEVMGIL 258 (347)
T ss_dssp CCSSCEEEEEC--SSCEEESS
T ss_pred ccccceEEEEC--CCceEecc
Confidence 12346799999 66666654
No 265
>1ic2_A Tropomyosin alpha chain, skeletal muscle; alpha-helical coiled coil, alanine, symmetry, axial stagger, BEND, contractIle protein; 2.00A {Gallus gallus} SCOP: h.1.5.1
Probab=84.70 E-value=5.5 Score=32.79 Aligned_cols=70 Identities=16% Similarity=0.123 Sum_probs=58.6
Q ss_pred HHHHHHHHHHHHHhcchhHHHHHHHhhHHHHHhhhhhHHhhHHHHHHHHHHHHHHHHHHHHHHhhhhhhh
Q 005043 569 QFYESKMAALIRKNGILEGQLAAALVNREAAEKNFSSVLKSRQEMEKKLADSLKEMELLKEKLAGLELAQ 638 (717)
Q Consensus 569 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 638 (717)
|..+.+.-.+..+...++.+|..+-...+++|.-+.++.+-.|.+|..|..+.......-.||..++.+-
T Consensus 9 ~~lk~e~d~a~~~~~~~e~~l~~~e~~~~~~E~ev~~L~kKiq~lE~eld~~ee~l~~a~~kLeeaek~~ 78 (81)
T 1ic2_A 9 QMLKLDKENALDRAEQAEADKKAAEERSKQLEDELVALQKKLKGTEDELDKYSESLKDAQEKLELADKKA 78 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHGGGC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 5566677778888889999999999999999999999999999999999888888888888887777653
No 266
>1itv_A MMP9; adaptive molecular recognition, beta propeller, dimer, hydrolase; 1.95A {Homo sapiens} SCOP: b.66.1.1
Probab=84.52 E-value=29 Score=33.24 Aligned_cols=153 Identities=16% Similarity=0.211 Sum_probs=80.6
Q ss_pred EEEEECCEEEEEcccCCCCCcccEEEEEcCCC--ceEEccccccCCCCCCCCCCCcccceEEEEE--CCEEEEEeccCCC
Q 005043 93 AAAVIGNKMIVVGGESGNGLLDDVQVLNFDRF--SWTAASSKLYLSPSSLPLKIPACRGHSLISW--GKKVLLVGGKTDS 168 (717)
Q Consensus 93 aav~~~~~lyV~GG~~~~~~~~~v~~yd~~t~--~W~~l~~~~~~~~~~~~~~~p~r~~hs~v~~--~~~Iyv~GG~~~~ 168 (717)
|++.+++++|+|=|. -+|+++.... ........ ..-+ .+|..-. ++... ++++|+|-|.
T Consensus 11 Ai~~~~g~~yfFkg~-------~~Wr~~~~~~~~~~~p~~Is-~~w~-----glP~~ID-Aa~~~~~~~~~yfFkG~--- 73 (195)
T 1itv_A 11 AIAEIGNQLYLFKDG-------KYWRFSEGRGSRPQGPFLIA-DKWP-----ALPRKLD-SVFEEPLSKKLFFFSGR--- 73 (195)
T ss_dssp EEEEETTEEEEEETT-------EEEEECCSSSCCCEEEEEHH-HHCT-----TSCSSCS-EEEECTTTCCEEEEETT---
T ss_pred EEEEeCCEEEEEECC-------EEEEEECCccccCCCcEEhh-hccC-----CCCCCcc-EEEEECCCCeEEEEeCC---
Confidence 455679999999773 4788876542 22111110 0000 1222222 33333 6889999774
Q ss_pred CCCceEEEEEECCCCcE-EEeeecCCCCCC--ceeeEEEEECCEEEEEccccCCCCCcCcEEEEEcCCCceEe-----cc
Q 005043 169 GSDRVSVWTFDTETECW-SVVEAKGDIPVA--RSGHTVVRASSVLILFGGEDGKRRKLNDLHMFDLKSLTWLP-----LH 240 (717)
Q Consensus 169 ~~~~~~v~~yD~~t~~W-~~l~~~g~~P~~--R~~hs~~~~~~~Lyv~GG~~~~~~~~~~v~~yD~~t~~W~~-----l~ 240 (717)
.+|+|+..+-.- ..+..- .+|.. ....+....++++|+|-| +..|+||..+++-.. +.
T Consensus 74 -----~yw~~~~~~~~~Pk~i~~~-G~p~~~~~iDAA~~~~~g~~yfFkg--------~~ywr~d~~~~~~~~gyPr~i~ 139 (195)
T 1itv_A 74 -----QVWVYTGASVLGPRRLDKL-GLGADVAQVTGALRSGRGKMLLFSG--------RRLWRFDVKAQMVDPRSASEVD 139 (195)
T ss_dssp -----EEEEEETTEEEEEEEGGGG-TCCTTCCCCCEEEECSTTEEEEEET--------TEEEEEETTTTEECGGGCEEHH
T ss_pred -----EEEEEcCCccCCCEEeeec-ccCCCccceeEEEEcCCCeEEEEeC--------CEEEEEeCCcccccCCCccChh
Confidence 589998653111 011111 23432 233333333579999965 457999987653211 10
Q ss_pred -CCCCCCCCCcccEEEEECCcEEEEEcCCCCCCCCCeEEEEECCCCc
Q 005043 241 -CTGTGPSPRSNHVAALYDDKNLLIFGGSSKSKTLNDLYSLDFETMI 286 (717)
Q Consensus 241 -~~g~~P~~R~~~aa~~~~~~~lyV~GG~~~~~~~ndv~~yd~~t~~ 286 (717)
.-..+|. .-.++...++. +|+|-|. ..|+||..+..
T Consensus 140 ~~w~Gvp~--~idaa~~~~g~-~Yffkg~-------~y~~~~~~~~~ 176 (195)
T 1itv_A 140 RMFPGVPL--DTHDVFQFREK-AYFCQDR-------FYWRVSSRSEL 176 (195)
T ss_dssp HHSTTSCS--SCSEEEEETTE-EEEEETT-------EEEEEECCTTC
T ss_pred hcCCCCCC--CCCEEEEeCCe-EEEEeCC-------EEEEEECCccE
Confidence 0012222 23344555655 8998874 58999987665
No 267
>2efr_A General control protein GCN4 and tropomyosin 1 Al; destabilizing cluster, hydrophobic core, contractIle protein; 1.80A {Saccharomyces cerevisiae} PDB: 2efs_A 2d3e_A
Probab=84.45 E-value=2.2 Score=39.67 Aligned_cols=73 Identities=26% Similarity=0.360 Sum_probs=46.5
Q ss_pred chhHHHHHHHhhHHHHHhhhhhHHhhHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhcccccccccCCccchhhHHHHH
Q 005043 584 ILEGQLAAALVNREAAEKNFSSVLKSRQEMEKKLADSLKEMELLKEKLAGLELAQEEANSLSNIVHSDNVRLEHDVAFLK 663 (717)
Q Consensus 584 ~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 663 (717)
.|..+|..|-+--|.||++++-.=+....+|.+|......+..+.+.|.. +--+.++ +-++|--|+++|+-||
T Consensus 81 ~L~~kLKEAE~RAE~AERsv~kLEk~id~lEd~L~~~Kek~~~i~~eLd~---tl~el~~----~~~~~~~~~~~~~~~~ 153 (155)
T 2efr_A 81 VLSDKLKEAETRAEFAERSVTKLEKSIDDLEDELYAQKLKYKAISEEMKQ---LEDKVEE----LLSKNYHLENEVARLK 153 (155)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHH----HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHh----cccchHHHHHHHHHhh
Confidence 45666777777777777777777666777776666555555555444432 2223333 2678888888888887
No 268
>1sqj_A OXG-RCBH, oligoxyloglucan reducing-END-specific cellobiohydrolase; beta-propeller; 2.20A {Geotrichum SP} SCOP: b.69.13.1 b.69.13.1 PDB: 2ebs_A*
Probab=83.88 E-value=73 Score=37.27 Aligned_cols=268 Identities=10% Similarity=0.118 Sum_probs=130.3
Q ss_pred CCCeEEeeecCCCCCCcceeEEEEE---CCEEEEEcccCCCCCcccEEEEEcCCCceEEccccccCCCCCCCCCCCcccc
Q 005043 73 SENWMVLSIAGDKPIPRFNHAAAVI---GNKMIVVGGESGNGLLDDVQVLNFDRFSWTAASSKLYLSPSSLPLKIPACRG 149 (717)
Q Consensus 73 s~~W~~l~~~g~~P~~R~~haav~~---~~~lyV~GG~~~~~~~~~v~~yd~~t~~W~~l~~~~~~~~~~~~~~~p~r~~ 149 (717)
...|+.+. . .....-.+.++. .+.+|+ |+..+ .+++-+-...+|+.+..... + ........
T Consensus 3 ~~~W~~~~---~-~~~g~i~~i~~~p~~~~~~~a-~~~~g-----gv~rS~DgG~tW~~~~~~~~--~----~~~~~~~i 66 (789)
T 1sqj_A 3 HYEFKNVA---I-GGGGYITGIVAHPKTKDLLYA-RTDIG-----GAYRWDAGTSKWIPLNDFIE--A----QDMNIMGT 66 (789)
T ss_dssp -CEEEECC---C-CBCSCEEEEEECSSSTTCEEE-EESSS-----CEEEEETTTTEEEESCTTCC--G----GGGGGCSE
T ss_pred cccceEcc---C-CCCCcEEEEEECCCCCCEEEE-EecCC-----CEEEecCCCCCeeECccCCC--c----ccccCCce
Confidence 45699885 2 222222333332 244555 43222 47777777789999764100 0 00011223
Q ss_pred eEEEEEC---CEEEEEeccCCCCCCceEEEEEECCCCcEEEeeecCCCC---CCc-eeeEEEEE---CCEEEEEccccCC
Q 005043 150 HSLISWG---KKVLLVGGKTDSGSDRVSVWTFDTETECWSVVEAKGDIP---VAR-SGHTVVRA---SSVLILFGGEDGK 219 (717)
Q Consensus 150 hs~v~~~---~~Iyv~GG~~~~~~~~~~v~~yD~~t~~W~~l~~~g~~P---~~R-~~hs~~~~---~~~Lyv~GG~~~~ 219 (717)
+++++.. +.+|+..|...... ...+++-+-.-.+|+.+......+ ..| ..+.+++. .+.+|+ |...
T Consensus 67 ~~ia~dp~~~~~i~~~~g~~~~~~-~~~v~~S~DgG~TW~~~~~~~~~~~~~~~~~~~~~iav~p~~~~~v~~-g~~~-- 142 (789)
T 1sqj_A 67 ESIALDPNNPDRLYLAQGRYVGDE-WAAFYVSEDRGQSFTIYESPFPMGANDMGRNNGERLAVNPFNSNEVWM-GTRT-- 142 (789)
T ss_dssp EEEEEETTEEEEEEEEECSCTTSS-CCEEEEESSTTSEEEEEECSSCCCTTSTTTTSCCCEEEETTEEEEEEE-ECSS--
T ss_pred eEEEECCCCCCEEEEEeCccCCCc-ccEEEEECCCCCcceeccCCcccCccCCCccceeEEEEcCCCCCEEEE-Eecc--
Confidence 4444432 56888766421111 145666666677899986411111 122 22345444 245666 3311
Q ss_pred CCCcCcEEEEEcCCCceEeccCCCCCCCCCcccEEEEE---CCcEEEEEcCCCCCCCCCeEEEEECCCCcEEEeecCCCC
Q 005043 220 RRKLNDLHMFDLKSLTWLPLHCTGTGPSPRSNHVAALY---DDKNLLIFGGSSKSKTLNDLYSLDFETMIWTRIKIRGFH 296 (717)
Q Consensus 220 ~~~~~~v~~yD~~t~~W~~l~~~g~~P~~R~~~aa~~~---~~~~lyV~GG~~~~~~~ndv~~yd~~t~~W~~v~~~g~~ 296 (717)
..+++=+-.-.+|+.+.....+...-.+...+.+ +...+|+..... ..+++=.-...+|+.+...
T Consensus 143 ----~gl~~S~DgG~TW~~~~~~~~~~~~~~~~~~i~~~p~~~~~~~~~~~~~-----~~v~~S~DgG~TW~~~~~~--- 210 (789)
T 1sqj_A 143 ----EGIWKSSDRAKTWTNVTSIPDAFTNGIGYTSVIFDPERNGTIYASATAP-----QGMYVTHDGGVSWEPVAGQ--- 210 (789)
T ss_dssp ----SCEEEESSTTSSCEEETTSCCCCSTTTCEEEEEECTTSTTCEEEEESST-----TCEEEESSTTSSCEECTTC---
T ss_pred ----CCEEEECCCCcccCCCccCccccCCCCCeEEEEECCCCCCEEEEEEcCC-----CeEEEEcCCCcCcccCCCC---
Confidence 3355544445789988631111111122233333 233466654321 2355544456789998632
Q ss_pred CCC----------------CcceEEEEE--CCEEEEEecCCCC---CccCeEEEEECCCCcEEEeecCCCC-CCCC----
Q 005043 297 PSP----------------RAGCCGVLC--GTKWYIAGGGSRK---KRHAETLIFDILKGEWSVAITSPSS-SVTS---- 350 (717)
Q Consensus 297 P~~----------------R~~~sav~~--~~~IyV~GG~~~~---~~~~dv~~yD~~t~~W~~l~~~p~~-~~~~---- 350 (717)
|.. ...+.+++. ++.||+..+.... .....+++.+-...+|+.+...+.. .|.+
T Consensus 211 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~l~~~~~~~~~p~~g~~g~l~~S~DgG~tW~~~~~~~~~~~p~~~~~~ 290 (789)
T 1sqj_A 211 PSSWLNRTTGAFPDKKPASIAPQPMKVALTPNFLYVTYADYPGPWGVTFGEVWRQNRTSGAWDDITPRVGNSSPAPYNNQ 290 (789)
T ss_dssp CCSCCHHHHHTSTTCCCSSSSCEEEEEEECSSEEEEEEESSCSSSCCCCCCEEEEETTTCCEEECCCCTTTEESCCCSSC
T ss_pred cCccccccccccCcccccccccceeEEcCCCCeEEEEEecCCCCCCCCCceEEEEeCCCCceEECcCCCCcccccccccc
Confidence 221 111444443 7889988532111 1234689999899999998642221 0100
Q ss_pred Cc---ceEEEEEEeCCCcEEEEEcC
Q 005043 351 NK---GFTLVLVQHKEKDFLVAFGG 372 (717)
Q Consensus 351 r~---g~s~v~v~~~~~~~I~v~GG 372 (717)
.. ++..+.+...+.+.||+.++
T Consensus 291 ~~~~~g~~~lav~p~~~~~v~~~~~ 315 (789)
T 1sqj_A 291 TFPAGGFCGLSVDATNPNRLVVITL 315 (789)
T ss_dssp CSCCCEEEEEEEETTEEEEEEEEEE
T ss_pred ccccCceEEEEECCCCCCEEEEEEe
Confidence 22 44455553333456777765
No 269
>2no2_A HIP-I, huntingtin-interacting protein 1; clathrin light chain binding, HIP1 coiled-coil domain, endocytosis, clathrin SELF-assembly, cell adhesion; 2.80A {Homo sapiens}
Probab=83.63 E-value=10 Score=32.95 Aligned_cols=30 Identities=27% Similarity=0.275 Sum_probs=24.5
Q ss_pred HHHHHHhcchhHHHHHHHhhHHHHHhhhhh
Q 005043 576 AALIRKNGILEGQLAAALVNREAAEKNFSS 605 (717)
Q Consensus 576 ~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~ 605 (717)
+.|||+|+-.--||+.+.+..+++|+-...
T Consensus 4 i~LLRK~aE~~KqL~~~~q~~~e~e~~k~e 33 (107)
T 2no2_A 4 ADLLRKNAEVTKQVSMARQAQVDLEREKKE 33 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 579999999999999998888877764433
No 270
>1xfd_A DIP, dipeptidyl aminopeptidase-like protein 6, dipeptidylpeptidase 6; DPPX, DPP6, KV4, KV, KAF, membrane protein; HET: NDG NAG BMA MAN; 3.00A {Homo sapiens} SCOP: b.70.3.1 c.69.1.24
Probab=83.46 E-value=11 Score=42.98 Aligned_cols=110 Identities=14% Similarity=-0.009 Sum_probs=57.2
Q ss_pred EEEEEECCCCcEEEeeecCCCCCCceeeEEEE-ECCEEEEEccccCCC---CCcCcEEEEEcCCCceEeccCCCCCCCCC
Q 005043 174 SVWTFDTETECWSVVEAKGDIPVARSGHTVVR-ASSVLILFGGEDGKR---RKLNDLHMFDLKSLTWLPLHCTGTGPSPR 249 (717)
Q Consensus 174 ~v~~yD~~t~~W~~l~~~g~~P~~R~~hs~~~-~~~~Lyv~GG~~~~~---~~~~~v~~yD~~t~~W~~l~~~g~~P~~R 249 (717)
.++++|+.+++-..+........... ...+. -+++.++++..+... .....++++|+.+.+-..+.... ....+
T Consensus 38 ~i~~~d~~~g~~~~~~~~~~~~~~~v-~~~~~SpDg~~l~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~l~~~~-~~~~~ 115 (723)
T 1xfd_A 38 TVRLWNVETNTSTVLIEGKKIESLRA-IRYEISPDREYALFSYNVEPIYQHSYTGYYVLSKIPHGDPQSLDPPE-VSNAK 115 (723)
T ss_dssp CEEEBCGGGCCCEEEECTTTTTTTTC-SEEEECTTSSEEEEEESCCCCSSSCCCSEEEEEESSSCCCEECCCTT-CCSCC
T ss_pred CEEEEECCCCcEEEEecccccccccc-ceEEECCCCCEEEEEecCccceeecceeeEEEEECCCCceEeccCCc-ccccc
Confidence 58899988876554432111100011 22222 356666665543221 23478999999988766554211 11111
Q ss_pred cccEEEEECCcEEEEEcCCCCCCCCCeEEEEECCCCcEEEeec
Q 005043 250 SNHVAALYDDKNLLIFGGSSKSKTLNDLYSLDFETMIWTRIKI 292 (717)
Q Consensus 250 ~~~aa~~~~~~~lyV~GG~~~~~~~ndv~~yd~~t~~W~~v~~ 292 (717)
....+..-+++ .++++.. +.++++|..++....+..
T Consensus 116 ~~~~~~SPdG~-~la~~~~------~~i~~~~~~~g~~~~~~~ 151 (723)
T 1xfd_A 116 LQYAGWGPKGQ-QLIFIFE------NNIYYCAHVGKQAIRVVS 151 (723)
T ss_dssp CSBCCBCSSTT-CEEEEET------TEEEEESSSSSCCEEEEC
T ss_pred ccccEECCCCC-EEEEEEC------CeEEEEECCCCceEEEec
Confidence 12222222455 3444432 379999998887776654
No 271
>3a0f_A Xyloglucanase; beta-propeller, hydrolase; 2.50A {Geotrichum SP}
Probab=83.18 E-value=76 Score=36.94 Aligned_cols=242 Identities=11% Similarity=0.089 Sum_probs=118.8
Q ss_pred CCCCeEEeeecCCCCCCcceeEE--EEE--C-CEEEEEcccCCCCCcccEEEEEcCCCceEEccccccCCCCCCCCCC-C
Q 005043 72 NSENWMVLSIAGDKPIPRFNHAA--AVI--G-NKMIVVGGESGNGLLDDVQVLNFDRFSWTAASSKLYLSPSSLPLKI-P 145 (717)
Q Consensus 72 ~s~~W~~l~~~g~~P~~R~~haa--v~~--~-~~lyV~GG~~~~~~~~~v~~yd~~t~~W~~l~~~~~~~~~~~~~~~-p 145 (717)
.+.+|..+.. . +.++.. ++. + +.+|+.+ .. ..+|+-+-...+|+.+........ .+... .
T Consensus 8 ~~~~~~~~~~----g--~~g~i~~i~~~p~~~~~~y~~~-~~-----ggv~~S~DgG~tW~~~~~~~~~~~--~~~~~~~ 73 (763)
T 3a0f_A 8 VTAELKPVTI----S--GGGFISGLVAHPTEKDLIYART-DI-----GGTYRWNAAKWEWEPITDFIINNA--LAGNGAN 73 (763)
T ss_dssp --CEEEECSC----C--BCSCEEEEEECSSSTTCEEEEE-SS-----SCEEEEETTTTEEEESCTTCBTTC--SSSCCCC
T ss_pred EEEEEEeeEe----c--CCCceeEEEeCCCCCCEEEEEe-cc-----CcEEEECCCCCCeeECccCccccc--cCCCccc
Confidence 5677887752 2 333333 222 2 3455553 22 147777777789999875210000 00000 1
Q ss_pred cccceEEEEE---CCEEEEEeccCCCCCCceEEEEEECCCCcEEEeeecCCCC---CCc-eeeEEEEE---CCEEEEEcc
Q 005043 146 ACRGHSLISW---GKKVLLVGGKTDSGSDRVSVWTFDTETECWSVVEAKGDIP---VAR-SGHTVVRA---SSVLILFGG 215 (717)
Q Consensus 146 ~r~~hs~v~~---~~~Iyv~GG~~~~~~~~~~v~~yD~~t~~W~~l~~~g~~P---~~R-~~hs~~~~---~~~Lyv~GG 215 (717)
....+++++. .+.+|+..|..........+++-+-.-.+|+.+......+ ..| ....+++. .+.+|+.+
T Consensus 74 ~~~~~~ia~dp~~~~~~~~~~g~~~~~~~~~~i~~S~DgG~TW~~~~~~~~~~~~~~g~~~~~~l~v~p~~~~~v~a~~- 152 (763)
T 3a0f_A 74 LLGTESIALDPHNPDRLYLAQGDYVQWDPWAAFLVSDDRGKTFKQYRSPVPMGANDMGRNGGERLAVNPHWTDELWFGS- 152 (763)
T ss_dssp CCSEEEEECCTTCTTCEEEEECSCTTTCSCCEEEEESSTTSSCEEEECSSCCCTTSTTTTSBCCEEECTTSTTCEEEEC-
T ss_pred ccceeEEEECCCCCCEEEEEecccccCCCCceEEEECCCCCCceeccCCcccCccccCccccceEEECCCCCCEEEEEe-
Confidence 1122333332 3678887653111111235666555567899987311111 122 22334443 35777754
Q ss_pred ccCCCCCcCcEEEEEcCCCceEeccCCCCCCCCC---cccEEEEEC---CcEEEEEcCCCCCCCCCeEEEEECCCCcEEE
Q 005043 216 EDGKRRKLNDLHMFDLKSLTWLPLHCTGTGPSPR---SNHVAALYD---DKNLLIFGGSSKSKTLNDLYSLDFETMIWTR 289 (717)
Q Consensus 216 ~~~~~~~~~~v~~yD~~t~~W~~l~~~g~~P~~R---~~~aa~~~~---~~~lyV~GG~~~~~~~ndv~~yd~~t~~W~~ 289 (717)
. ...+++=+=.-.+|+.+. .+|... .+...+.++ ...+|+.....+ .+++-+-...+|+.
T Consensus 153 ~------~~~l~~S~DgG~TW~~~~---~~~~~~~~~~~~~~i~~~p~~~~~~~~~~~~~g-----~v~~S~DgG~tW~~ 218 (763)
T 3a0f_A 153 R------TQGLWRSTDRAQTWSRMN---QLPDSSTYGIGIISVIFDPKNVGTAYVASHAVG-----GLWVTWDGGANWSQ 218 (763)
T ss_dssp S------SSCEEEESSTTSSCEECT---TSCCCSCTTTCEEEEEECSSSTTCEEEEESSTT-----CEEEESSSSSSCEE
T ss_pred C------CCcEEEECCCCcCccccc---cCcccCCCccceEEEEECCCCCCEEEEEEeCCC-----eEEEECCCCCCccc
Confidence 1 134554444456899986 344322 222233332 233676543221 35555555678999
Q ss_pred eecCCCCC-----------------CCCcceEEEEE-CCEEEEEecCCC---CCccCeEEEEECCCCcEEEeec
Q 005043 290 IKIRGFHP-----------------SPRAGCCGVLC-GTKWYIAGGGSR---KKRHAETLIFDILKGEWSVAIT 342 (717)
Q Consensus 290 v~~~g~~P-----------------~~R~~~sav~~-~~~IyV~GG~~~---~~~~~dv~~yD~~t~~W~~l~~ 342 (717)
+...+... .+...+.++.. ++.+|+...... ......+++++-...+|+.+..
T Consensus 219 ~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~g~l~~~~~~~~~~~~~~~g~v~rS~D~G~tW~~~~~ 292 (763)
T 3a0f_A 219 VGGQPTQWSDWTKSIVAASGTAIQSSGPLPIKIALGKNGRLYITYSDAPGPWGVLYGEVWSYDPTNGNWKHITP 292 (763)
T ss_dssp CTTCCCSCCHHHHHHHHHHCCCCSSSSCEEEEEEECTTSCEEEEEESSCSSSCCCCEEEEEEETTTTEEEECCT
T ss_pred cCCCccccccccccccccccccccCCCCcceeEEECCCCcEEEEeccCCCCCCCcceeEEEEeCCCCceEECCC
Confidence 86431100 23334444433 578888753210 0123468999999999999863
No 272
>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori}
Probab=83.12 E-value=2.9 Score=42.31 Aligned_cols=33 Identities=18% Similarity=0.109 Sum_probs=14.5
Q ss_pred HHHHHHHHhcchhHHHHHHHhhHHHHHhhhhhH
Q 005043 574 KMAALIRKNGILEGQLAAALVNREAAEKNFSSV 606 (717)
Q Consensus 574 ~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~ 606 (717)
++.++-+.-..+|.+++.+-+..+..++++.++
T Consensus 54 ~l~d~~~~~~~~e~~i~~~~~ri~~~~~~l~~v 86 (256)
T 3na7_A 54 EKLALKLQVSKNEQTLQDTNAKIASIQKKMSEI 86 (256)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc
Confidence 333344444444444444444444444444433
No 273
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=82.95 E-value=1.6 Score=58.63 Aligned_cols=84 Identities=14% Similarity=0.177 Sum_probs=47.6
Q ss_pred HHHHHhhhhhHHhhHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhcc-cccccccCCccchhhHHHHHHHHHHHHHHhh
Q 005043 596 REAAEKNFSSVLKSRQEMEKKLADSLKEMELLKEKLAGLELAQEEANS-LSNIVHSDNVRLEHDVAFLKAVLDDTQKELH 674 (717)
Q Consensus 596 ~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 674 (717)
.++||+.|..|.+.++++|++.+.+.++.+.+.++.+.++.-++++.. |...-=+ -=++.+||-+.+-|+.++++|.
T Consensus 1954 ~~ea~~~l~~i~~~~~~ae~~k~~v~~~~~~~~~~~~ei~~~k~~~e~dL~~A~Pa--~Pkr~~l~~ae~~l~~~~~~L~ 2031 (3245)
T 3vkg_A 1954 NEQANQKLKQMVQDQQAAEIKQKDARELQVQLDVRNKEIAVQKVKAYADLEKAEPT--GPLREEVEQLENAANELKLKQD 2031 (3245)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC---------CHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCC--ChHHHHHHHHHHHHHHHHHHHH
Confidence 345666777777788888877777766666665554444333332221 2111111 3445667777777777777777
Q ss_pred hhccchh
Q 005043 675 STRGVLA 681 (717)
Q Consensus 675 ~~~~~~~ 681 (717)
..+.-|+
T Consensus 2032 ~~~~~L~ 2038 (3245)
T 3vkg_A 2032 EIVATIT 2038 (3245)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 6666555
No 274
>1ci6_A Transcription factor ATF-4; BZIP; 2.60A {Homo sapiens} SCOP: h.1.3.1
Probab=82.64 E-value=2.7 Score=32.96 Aligned_cols=55 Identities=22% Similarity=0.318 Sum_probs=38.2
Q ss_pred HhhhhhHHhhHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhcccccccccCCccchhhHHHHHHHHHH
Q 005043 600 EKNFSSVLKSRQEMEKKLADSLKEMELLKEKLAGLELAQEEANSLSNIVHSDNVRLEHDVAFLKAVLDD 668 (717)
Q Consensus 600 e~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 668 (717)
+.|-..+.++||.-..+..++..+.+.|+.+-+.++. +. -.|+.++++||.+|-|
T Consensus 8 ~rNr~AA~R~R~KKk~~~~~le~~~~~L~~~N~~L~~---~i-----------~~L~~E~~~Lk~ll~e 62 (63)
T 1ci6_A 8 EQNKTAATRYRQKKRAEQEALTGECKELEKKNEALKE---RA-----------DSLAKEIQYLKDLIEE 62 (63)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HH-----------HHHHHHHHHHHHHHHH
T ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HH-----------HHHHHHHHHHHHHHhh
Confidence 3466667888887777777777777777776666652 11 1467889999988865
No 275
>3hnw_A Uncharacterized protein; coiled-coil, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.20A {Eubacterium eligens}
Probab=82.43 E-value=9 Score=34.93 Aligned_cols=75 Identities=15% Similarity=0.247 Sum_probs=59.0
Q ss_pred HHHHHHHHHHHHHH--hcchhHHHHHHHhhHHHHHhhhhhHHhhHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhcc
Q 005043 568 YQFYESKMAALIRK--NGILEGQLAAALVNREAAEKNFSSVLKSRQEMEKKLADSLKEMELLKEKLAGLELAQEEANS 643 (717)
Q Consensus 568 ~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 643 (717)
-++...||..+-.+ +..+...-.|+|+..--|..-+. .-+..++++..+++..+|+..||++|..+...-|++..
T Consensus 34 A~~vd~km~ei~~~~~~~~l~~~r~aVLaALNiadEl~k-~~~~~~~L~~~l~~~~kE~~~lK~el~~~~~k~e~~~~ 110 (138)
T 3hnw_A 34 ASYINNKITEFNKEESYRRMSAELRTDMMYLNIADDYFK-AKKMADSLSLDIENKDKEIYDLKHELIAAQIKAESSAK 110 (138)
T ss_dssp HHHHHHHHHHHTTCHHHHTSCHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 36889999999966 99999888888888877665433 34456788889999999999999999888776666544
No 276
>3u59_A Tropomyosin beta chain; muscle contraction, actin, contractIle protein; 2.50A {Gallus gallus}
Probab=82.39 E-value=3.3 Score=35.69 Aligned_cols=56 Identities=16% Similarity=0.185 Sum_probs=30.0
Q ss_pred HHHHHHHHHHhcchhHHHHHHHhhHHHHHhhhhhHHhhHHHHHHHHHHHHHHHHHH
Q 005043 572 ESKMAALIRKNGILEGQLAAALVNREAAEKNFSSVLKSRQEMEKKLADSLKEMELL 627 (717)
Q Consensus 572 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~l 627 (717)
+..+++|-+|+..||.+|+.+......+..+|...-+.+++.|..++.+.+-+-+|
T Consensus 43 E~ei~sL~kKiq~lE~eld~~~e~l~~a~~kLe~~ek~~~~AE~evasLnRriqll 98 (101)
T 3u59_A 43 EEEQQGLQKKLKGTEDEVEKYSESVKEAQEKLEQAEKKATDAEAEVASLNRRIQLV 98 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555566666666666665555555555555555444455555554444444444
No 277
>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori}
Probab=82.38 E-value=7.5 Score=39.19 Aligned_cols=70 Identities=13% Similarity=0.176 Sum_probs=44.7
Q ss_pred HHHHHHHHHHHHHhcchhHHHHHHHhhHHHHHhhhhhHHhhHHHHHHHHHHHHHHHHHHHHHHhhhhhhh
Q 005043 569 QFYESKMAALIRKNGILEGQLAAALVNREAAEKNFSSVLKSRQEMEKKLADSLKEMELLKEKLAGLELAQ 638 (717)
Q Consensus 569 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 638 (717)
|....+|..+-.+-+.|-.+|++..+.+..++..+..+-.....+++.+.....+++.+++++...+..+
T Consensus 14 Q~lD~~i~~l~~~~~~lp~el~~le~~~~~l~~~~~~~~~~l~d~~~~~~~~e~~i~~~~~ri~~~~~~l 83 (256)
T 3na7_A 14 SHLDKEIDSLEPLIREKRKDLDKALNDKEAKNKAILNLEEEKLALKLQVSKNEQTLQDTNAKIASIQKKM 83 (256)
T ss_dssp HHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4445555555555555666666666666666666666666666677777666666666666666665443
No 278
>3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R*
Probab=82.36 E-value=44 Score=33.62 Aligned_cols=146 Identities=10% Similarity=0.105 Sum_probs=74.8
Q ss_pred CCEEEEEccccCCCCCcCcEEEEEcCCCceEe-ccCCCCCCCCCcccEEEEECCcEEEEEcCCCCCCCCCeEEEEECCCC
Q 005043 207 SSVLILFGGEDGKRRKLNDLHMFDLKSLTWLP-LHCTGTGPSPRSNHVAALYDDKNLLIFGGSSKSKTLNDLYSLDFETM 285 (717)
Q Consensus 207 ~~~Lyv~GG~~~~~~~~~~v~~yD~~t~~W~~-l~~~g~~P~~R~~~aa~~~~~~~lyV~GG~~~~~~~ndv~~yd~~t~ 285 (717)
++..++.|+.+ ..+.+||+.+++-.. +. + ....-.++....+..+++.|+.++ .+.+||+...
T Consensus 76 dg~~l~s~s~D------~~v~~wd~~~~~~~~~~~--~---h~~~v~~~~~~~~~~~l~s~s~D~-----~i~vwd~~~~ 139 (319)
T 3frx_A 76 DGAYALSASWD------KTLRLWDVATGETYQRFV--G---HKSDVMSVDIDKKASMIISGSRDK-----TIKVWTIKGQ 139 (319)
T ss_dssp TSSEEEEEETT------SEEEEEETTTTEEEEEEE--C---CSSCEEEEEECTTSCEEEEEETTS-----CEEEEETTSC
T ss_pred CCCEEEEEeCC------CEEEEEECCCCCeeEEEc--c---CCCcEEEEEEcCCCCEEEEEeCCC-----eEEEEECCCC
Confidence 46677777654 348889988775322 21 1 111112233333433677777654 4888898765
Q ss_pred cEEEeecCCCCCCCCcceEEEEE-------CCEEEEEecCCCCCccCeEEEEECCCCcEEEeecCCCCCCCCCcceEEEE
Q 005043 286 IWTRIKIRGFHPSPRAGCCGVLC-------GTKWYIAGGGSRKKRHAETLIFDILKGEWSVAITSPSSSVTSNKGFTLVL 358 (717)
Q Consensus 286 ~W~~v~~~g~~P~~R~~~sav~~-------~~~IyV~GG~~~~~~~~dv~~yD~~t~~W~~l~~~p~~~~~~r~g~s~v~ 358 (717)
.-..+... .....+.... ++.+++.||.++ .+.+||+.+..-.... .. .......+.
T Consensus 140 ~~~~~~~h-----~~~v~~~~~~~~~~~~~~~~~l~s~~~d~-----~i~~wd~~~~~~~~~~--~~----h~~~v~~~~ 203 (319)
T 3frx_A 140 CLATLLGH-----NDWVSQVRVVPNEKADDDSVTIISAGNDK-----MVKAWNLNQFQIEADF--IG----HNSNINTLT 203 (319)
T ss_dssp EEEEECCC-----SSCEEEEEECCC------CCEEEEEETTS-----CEEEEETTTTEEEEEE--CC----CCSCEEEEE
T ss_pred eEEEEecc-----CCcEEEEEEccCCCCCCCccEEEEEeCCC-----EEEEEECCcchhheee--cC----CCCcEEEEE
Confidence 44333211 1111112221 233666777554 3889998876543321 11 111222333
Q ss_pred EEeCCCcEEEEEcCCCCCCCCeEEEEEccCCc
Q 005043 359 VQHKEKDFLVAFGGIKKEPSNQVEVLSIEKNE 390 (717)
Q Consensus 359 v~~~~~~~I~v~GG~~~~~~n~v~vyd~~~~e 390 (717)
+. .++.+++.||.++ .|.+||+.+.+
T Consensus 204 ~s--p~g~~l~s~~~dg----~i~iwd~~~~~ 229 (319)
T 3frx_A 204 AS--PDGTLIASAGKDG----EIMLWNLAAKK 229 (319)
T ss_dssp EC--TTSSEEEEEETTC----EEEEEETTTTE
T ss_pred Ec--CCCCEEEEEeCCC----eEEEEECCCCc
Confidence 32 2445667777643 57888887654
No 279
>3c7x_A Matrix metalloproteinase-14; membrane protein interaction, Pro-MMP-2, TIMP-2, metastasis, calcium, cleavage on PAIR of basic residues, hydrolase; 1.70A {Homo sapiens}
Probab=82.33 E-value=17 Score=34.95 Aligned_cols=153 Identities=14% Similarity=0.194 Sum_probs=80.2
Q ss_pred EEEEECCEEEEEeccCCCCCCceEEEEEECCCC--cE-EEeeec-CCCCCCceeeEEEEECCEEEEEccccCCCCCcCcE
Q 005043 151 SLISWGKKVLLVGGKTDSGSDRVSVWTFDTETE--CW-SVVEAK-GDIPVARSGHTVVRASSVLILFGGEDGKRRKLNDL 226 (717)
Q Consensus 151 s~v~~~~~Iyv~GG~~~~~~~~~~v~~yD~~t~--~W-~~l~~~-g~~P~~R~~hs~~~~~~~Lyv~GG~~~~~~~~~~v 226 (717)
+++..++.+|+|-|. .+|+++...- -. ..+... ..+|. ....+....++++|+|-| +..
T Consensus 10 A~~~~~g~~~fFkg~--------~~w~~~~~~~~~gyP~~I~~~w~glP~-~iDAa~~~~~g~~yfFkg--------~~y 72 (196)
T 3c7x_A 10 TVAMLRGEMFVFKER--------WFWRVRNNQVMDGYPMPIGQFWRGLPA-SINTAYERKDGKFVFFKG--------DKH 72 (196)
T ss_dssp EEEEETTEEEEEETT--------EEEEEETTEECTTCSEEHHHHSTTCCS-SCCEEEECTTSCEEEEET--------TEE
T ss_pred EEEEcCCEEEEEECC--------EEEEEECCccCCCCceEhhHhccCCCC-CccEEEEeCCCcEEEecC--------CEE
Confidence 445679999999775 4888864310 00 111110 13454 222222224678999965 457
Q ss_pred EEEEcCCCce---EeccCCC-CCCCCCcccEEEEECCcEEEEEcCCCCCCCCCeEEEEECCCCcEE-----EeecCCCCC
Q 005043 227 HMFDLKSLTW---LPLHCTG-TGPSPRSNHVAALYDDKNLLIFGGSSKSKTLNDLYSLDFETMIWT-----RIKIRGFHP 297 (717)
Q Consensus 227 ~~yD~~t~~W---~~l~~~g-~~P~~R~~~aa~~~~~~~lyV~GG~~~~~~~ndv~~yd~~t~~W~-----~v~~~g~~P 297 (717)
|+|+..+... ..+...+ .+|......+.....++.+|+|-|. ..|+||..+++-. .+..-+..
T Consensus 73 w~~~~~~~~~gyPk~I~~~~~glP~~~IDAA~~~~~~g~~yfFkG~-------~yw~yd~~~~~v~~gyPk~i~~~~gi- 144 (196)
T 3c7x_A 73 WVFDEASLEPGYPKHIKELGRGLPTDKIDAALFWMPNGKTYFFRGN-------KYYRFNEELRAVDSEYPKNIKVWEGI- 144 (196)
T ss_dssp EEEETTEECTTCSEEGGGTCBSCCSSCCSEEEEETTTTEEEEEETT-------EEEEEETTTTEECTTCSEEGGGSBTC-
T ss_pred EEEeCCcccCCCCeEhhhcCCCCCCCcccEEEEEccCCEEEEEECC-------EEEEEeCCcccccCCCCccHHHCCCc-
Confidence 8887542111 1122111 2443333433332233448888773 5899998765321 11111011
Q ss_pred CCCcceEEEEE-CC-EEEEEecCCCCCccCeEEEEECCCCc
Q 005043 298 SPRAGCCGVLC-GT-KWYIAGGGSRKKRHAETLIFDILKGE 336 (717)
Q Consensus 298 ~~R~~~sav~~-~~-~IyV~GG~~~~~~~~dv~~yD~~t~~ 336 (717)
|..-.++... ++ ++|+|-| +..|.||..+.+
T Consensus 145 -p~~idaAf~~~~~~~~YfFkg-------~~y~r~d~~~~~ 177 (196)
T 3c7x_A 145 -PESPRGSFMGSDEVFTYFYKG-------NKYWKFNNQKLK 177 (196)
T ss_dssp -CSSCSEEEECTTSSEEEEEET-------TEEEEEETTTTE
T ss_pred -CCCcceeEEecCCCEEEEEEC-------CEEEEEECCcce
Confidence 2223344444 44 9999988 468999987764
No 280
>2oiz_A Aromatic amine dehydrogenase, large subunit; oxidoreductase, tryptophan tryptophyl quinone, H-tunneling; HET: TRQ TSR PG4; 1.05A {Alcaligenes faecalis} PDB: 2agw_A* 2agx_A* 2agl_A* 2agz_A* 2ah0_A* 2ah1_A* 2hj4_A* 2hjb_A* 2i0t_A* 2iup_A* 2iuq_A* 2iur_A* 2iuv_A* 2agy_A* 2ok4_A* 2ok6_A* 2iaa_A* 2h47_A* 2h3x_A* 2hkr_A* ...
Probab=81.00 E-value=41 Score=34.88 Aligned_cols=121 Identities=11% Similarity=0.126 Sum_probs=59.4
Q ss_pred CEEEEEeccCCCCCCceEEEEEECCCCcEEEeeecCCCCCCceeeEEEEE--CCEEEEEccccC---CCCCcCcEEEEEc
Q 005043 157 KKVLLVGGKTDSGSDRVSVWTFDTETECWSVVEAKGDIPVARSGHTVVRA--SSVLILFGGEDG---KRRKLNDLHMFDL 231 (717)
Q Consensus 157 ~~Iyv~GG~~~~~~~~~~v~~yD~~t~~W~~l~~~g~~P~~R~~hs~~~~--~~~Lyv~GG~~~---~~~~~~~v~~yD~ 231 (717)
..+|+.-.... ....+.+++||+.+.+-... +|..... .++.. +..+|+..-... .+...+.+.+||+
T Consensus 16 ~~~yv~~~~~~-~~~d~~v~v~D~~t~~~~~~-----i~~g~~p-~i~~spdg~~lyv~~~~~~~~~~g~~~~~v~v~d~ 88 (361)
T 2oiz_A 16 NRIYVMDSVFM-HLTESRVHVYDYTNGKFLGM-----VPTAFNG-HVQVSNDGKKIYTMTTYHERITRGKRSDVVEVWDA 88 (361)
T ss_dssp GEEEEEECCGG-GGGGCEEEEEETTTCCEEEE-----EECCEEE-EEEECTTSSEEEEEEEEETTSSSSCEEEEEEEEET
T ss_pred CEEEEECCCCC-ccccCeEEEEECCCCeEEEE-----ecCCCCC-ceEECCCCCEEEEEEecccccccCCCCCEEEEEEC
Confidence 45676642211 11134799999988775432 2222222 33333 357888753211 1112356899999
Q ss_pred CCCce-EeccCCCCCC-CCCc-ccEEEEECCcEEEEEcCCCCCCCCCeEEEEECCCCcEE
Q 005043 232 KSLTW-LPLHCTGTGP-SPRS-NHVAALYDDKNLLIFGGSSKSKTLNDLYSLDFETMIWT 288 (717)
Q Consensus 232 ~t~~W-~~l~~~g~~P-~~R~-~~aa~~~~~~~lyV~GG~~~~~~~ndv~~yd~~t~~W~ 288 (717)
.+.+- ..+...+... .... .+.+..-+++++|+.... ..+.|.+||+.+++-.
T Consensus 89 ~t~~~~~~i~~~~~~~~~g~~p~~i~~spdg~~l~v~n~~----~~~~v~v~d~~~~~~~ 144 (361)
T 2oiz_A 89 DKLTFEKEISLPPKRVQGLNYDGLFRQTTDGKFIVLQNAS----PATSIGIVDVAKGDYV 144 (361)
T ss_dssp TTCCEEEEEEECTTBCCBCCCGGGEEECTTSSEEEEEEES----SSEEEEEEETTTTEEE
T ss_pred cCCcEEEEEEcCccccccCCCcceEEECCCCCEEEEECCC----CCCeEEEEECCCCcEE
Confidence 87653 2232110000 0111 222233356677775321 1256899999887543
No 281
>3uux_B Mitochondrial division protein 1; tetratricopeptide repeat, mitochondrial fission, mitochondri cytoplasm, apoptosis; 3.90A {Saccharomyces cerevisiae S288C}
Probab=80.62 E-value=3.9 Score=40.44 Aligned_cols=75 Identities=17% Similarity=0.206 Sum_probs=37.5
Q ss_pred CCccccCCCCCCCCCCCchHHHHHHHHHHHHHHHhcchhHHHHHHHhhHHHHHhhhhhHHhhHHHHHHHHHHHHHH
Q 005043 548 DNVIFPDNDKSGALSGPSSIYQFYESKMAALIRKNGILEGQLAAALVNREAAEKNFSSVLKSRQEMEKKLADSLKE 623 (717)
Q Consensus 548 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~ 623 (717)
|.+..|...+.+..+.+-++ +..+...+.+.++.+.|+=|=.-|..+..++.++++-.-..|+.+.+|||-+.++
T Consensus 132 ~~f~lp~gi~~e~I~~SYSl-~~Lkk~~~~i~~~LelL~IRK~ma~sEI~EID~KI~~L~~mR~~vl~RLA~lEqd 206 (242)
T 3uux_B 132 DSFLIPPGVETAAISSSYSP-SALKSFSQTLVNSLEFLNIQKNSTLSEIRDIEVEVENLRQKKEKLLGKIANIEQN 206 (242)
T ss_dssp -------CCCCCGGGGSCCS-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccccCCCCCCHHHhcccccH-HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 34455554455544222222 3445555667777777766655555566666666665555555555555554443
No 282
>1gen_A Gelatinase A; hydrolase, hemopexin domain, metalloprotease, hydrolase (metalloprotease); 2.15A {Homo sapiens} SCOP: b.66.1.1 PDB: 1rtg_A
Probab=80.57 E-value=45 Score=32.56 Aligned_cols=154 Identities=15% Similarity=0.224 Sum_probs=80.0
Q ss_pred eEEEEECCEEEEEeccCCCCCCceEEEEEECCCCc-EEEeeec---CCCCCCceeeEEEE-ECCEEEEEccccCCCCCcC
Q 005043 150 HSLISWGKKVLLVGGKTDSGSDRVSVWTFDTETEC-WSVVEAK---GDIPVARSGHTVVR-ASSVLILFGGEDGKRRKLN 224 (717)
Q Consensus 150 hs~v~~~~~Iyv~GG~~~~~~~~~~v~~yD~~t~~-W~~l~~~---g~~P~~R~~hs~~~-~~~~Lyv~GG~~~~~~~~~ 224 (717)
-+++..++.+|+|=|. .+|+++..... ....... ..+|. ....+... .++++|+|-| +
T Consensus 34 DAi~~~~g~~~fFkg~--------~~Wr~~~~~~~~~~P~~I~~~wp~lp~-~IDAA~~~~~~~k~yfFkG--------~ 96 (218)
T 1gen_A 34 DGIAQIRGEIFFFKDR--------FIWRTVTPRDKPMGPLLVATFWPELPE-KIDAVYEAPQEEKAVFFAG--------N 96 (218)
T ss_dssp SEEEEETTEEEEEETT--------EEEEESSTTSCCEEEEEGGGTCTTSCS-CCSEEEEETTTTEEEEEET--------T
T ss_pred eEEEeCCCcEEEEECC--------EEEEEeCCCCccCCCEEHHHhcCCCCC-CccEEEEECCCCEEEEEeC--------C
Confidence 3556679999999774 48888765422 2221111 12332 22222222 2589999955 4
Q ss_pred cEEEEEcCCCc--e-EeccCCCCCCCC-CcccEEEEE-CCcEEEEEcCCCCCCCCCeEEEEECCCCcEE-----EeecCC
Q 005043 225 DLHMFDLKSLT--W-LPLHCTGTGPSP-RSNHVAALY-DDKNLLIFGGSSKSKTLNDLYSLDFETMIWT-----RIKIRG 294 (717)
Q Consensus 225 ~v~~yD~~t~~--W-~~l~~~g~~P~~-R~~~aa~~~-~~~~lyV~GG~~~~~~~ndv~~yd~~t~~W~-----~v~~~g 294 (717)
..|+||..+.. + ..+...| +|.. ..--++... .+..+|+|-| +..|+||..++.-. .+...
T Consensus 97 ~yW~y~~~~~~~gyPk~I~~~g-~p~~~~~IDAAf~~~~~g~~YfFkG-------~~ywr~d~~~~~v~~gyPr~i~~~- 167 (218)
T 1gen_A 97 EYWIYSASTLERGYPKPLTSLG-LPPDVQRVDAAFNWSKNKKTYIFAG-------DKFWRYNEVKKKMDPGFPKLIADA- 167 (218)
T ss_dssp EEEEEETTEECTTCSEEGGGGT-CCTTCCCCSEEEEETTTTEEEEEET-------TEEEEEETTTTEECSSCCEEHHHH-
T ss_pred EEEEEcCccccCCCCccHhhcC-CCCCcCCccEEEEEcCCCeEEEEEC-------CEEEEEECccccccCCCCcchhhc-
Confidence 57888842110 0 1111111 2221 112233332 3445898877 36899998765321 11100
Q ss_pred CCCCCCcceEEEEEC--CEEEEEecCCCCCccCeEEEEECCCCc
Q 005043 295 FHPSPRAGCCGVLCG--TKWYIAGGGSRKKRHAETLIFDILKGE 336 (717)
Q Consensus 295 ~~P~~R~~~sav~~~--~~IyV~GG~~~~~~~~dv~~yD~~t~~ 336 (717)
-+..+..-.++.... +++|+|-| +..|.||..+..
T Consensus 168 w~g~p~~idaAf~~~~~g~~YfFkg-------~~y~~~~~~~~~ 204 (218)
T 1gen_A 168 WNAIPDNLDAVVDLQGGGHSYFFKG-------AYYLKLENQSLK 204 (218)
T ss_dssp SSSCCSSCSEEEECTTTCEEEEEET-------TEEEEEETTEEE
T ss_pred cCCCCCCCCEEEEEcCCCcEEEEEC-------CEEEEEECCcee
Confidence 011122333555544 89999988 468899886554
No 283
>3ni0_A Bone marrow stromal antigen 2; coiled-coil, antiviral defense, immune system, GPI anchor; 1.60A {Mus musculus}
Probab=80.25 E-value=7 Score=32.78 Aligned_cols=18 Identities=28% Similarity=0.226 Sum_probs=12.2
Q ss_pred chhHHHHHHHhhHHHHHh
Q 005043 584 ILEGQLAAALVNREAAEK 601 (717)
Q Consensus 584 ~~~~~~~~~~~~~~~~e~ 601 (717)
.|+.||+-|..+.-++|-
T Consensus 22 lLq~qLT~Aq~~l~~~ea 39 (99)
T 3ni0_A 22 LLQRQLTRTQDSLLQAET 39 (99)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 467788877766666663
No 284
>2xe4_A Oligopeptidase B; hydrolase-inhibitor complex, hydrolase, protease inhibitor trypanosomes, CLAN SC; HET: FC0 RGL; 1.65A {Leishmania major}
Probab=80.15 E-value=76 Score=36.74 Aligned_cols=142 Identities=9% Similarity=0.009 Sum_probs=72.4
Q ss_pred eEEEEEECCCCcE--EEeeecCCCCCCceeeEEEEE-CC-EEEEEccccCCCCCcCcEEEEEcCCC--ce--EeccCCCC
Q 005043 173 VSVWTFDTETECW--SVVEAKGDIPVARSGHTVVRA-SS-VLILFGGEDGKRRKLNDLHMFDLKSL--TW--LPLHCTGT 244 (717)
Q Consensus 173 ~~v~~yD~~t~~W--~~l~~~g~~P~~R~~hs~~~~-~~-~Lyv~GG~~~~~~~~~~v~~yD~~t~--~W--~~l~~~g~ 244 (717)
..+|++++.+..- ..+-. .+...+....... ++ .|++..... ..+++|.+|+.+. .+ ..+...
T Consensus 247 ~~v~~~~lgt~~~~~~lv~~---~~~~~~~~~~~~SpDg~~l~~~~~~~----~~~~l~~~d~~~~~~~~~~~~l~~~-- 317 (751)
T 2xe4_A 247 NKVWRHVMGKLQSEDVCLYE---EHNPLFSAFMYKAADTNTLCIGSQSP----ETAEVHLLDLRKGNAHNTLEIVRPR-- 317 (751)
T ss_dssp EEEEEEETTSCGGGCEEEEE---CCCTTCEEEEEECTTSSEEEEEEECS----SCEEEEEEESSSCTTCCCEEESSCC--
T ss_pred CEEEEEECCCCchhcEEEEe---cCCCceEEEEEECCCCCEEEEEecCC----CCceEEEEECCCCCCCceeEEeecC--
Confidence 4799999877531 12211 1222222222222 34 455544322 2468999999875 46 655311
Q ss_pred CCCCCcccEEEEECCcEEEEEcCCCCCCCCCeEEEEECCC-CcEEE-eecCCCCCCCCcceEEEEECCEEEEEecCCCCC
Q 005043 245 GPSPRSNHVAALYDDKNLLIFGGSSKSKTLNDLYSLDFET-MIWTR-IKIRGFHPSPRAGCCGVLCGTKWYIAGGGSRKK 322 (717)
Q Consensus 245 ~P~~R~~~aa~~~~~~~lyV~GG~~~~~~~ndv~~yd~~t-~~W~~-v~~~g~~P~~R~~~sav~~~~~IyV~GG~~~~~ 322 (717)
...+ .+......++.||+....+ ......++.+|+.+ ..|+. +-.. ............++.||+....++
T Consensus 318 ~~~~--~~s~~~~~g~~l~~~t~~~-~a~~~~L~~~d~~~~~~~~~~li~~---~~~~~l~~~~~~~~~lv~~~~~~g-- 389 (751)
T 2xe4_A 318 EKGV--RYDVQMHGTSHLVILTNEG-GAVNHKLLIAPRGQPSDWSHVLVDH---SEDVFMESIAVRSNYLVVAGRRAG-- 389 (751)
T ss_dssp CTTC--CEEEEEETTTEEEEEECTT-TCTTCEEEEEETTSTTCCCCEEECC---CSSEEEEEEEECSSEEEEEEEETT--
T ss_pred CCCc--eEEEeeeeCCEEEEEeCCC-CCCCcEEEEEcCCCcccceeeEECC---CCCcEEEEEEEECCEEEEEEEeCC--
Confidence 1111 1222213455577776543 12235799999876 68876 5332 111111223334677777765433
Q ss_pred ccCeEEEEEC
Q 005043 323 RHAETLIFDI 332 (717)
Q Consensus 323 ~~~dv~~yD~ 332 (717)
...++++|+
T Consensus 390 -~~~l~~~dl 398 (751)
T 2xe4_A 390 -LTRIWTMMA 398 (751)
T ss_dssp -EEEEEEEEC
T ss_pred -EEEEEEEec
Confidence 356888986
No 285
>3o0z_A RHO-associated protein kinase 1; coiled-coil, transferase; HET: MSE; 2.33A {Homo sapiens}
Probab=79.95 E-value=8.1 Score=36.24 Aligned_cols=102 Identities=17% Similarity=0.219 Sum_probs=53.5
Q ss_pred HHHHHHHHhcchhHHHHHHHhhHHHHHhhhhhHHhhHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhcccccccccCCc
Q 005043 574 KMAALIRKNGILEGQLAAALVNREAAEKNFSSVLKSRQEMEKKLADSLKEMELLKEKLAGLELAQEEANSLSNIVHSDNV 653 (717)
Q Consensus 574 ~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 653 (717)
+++.|-.....||.+++.-.+..++--...+-..+...+|+.+++....|++-+|++++-++..--...---+..--+.-
T Consensus 56 ~~~~L~~~k~~Leke~~~LQa~L~qEr~~r~q~se~~~elq~ri~~L~~El~~~k~~~~k~~~e~r~L~Ekl~~lEKe~a 135 (168)
T 3o0z_A 56 RNRILENSKSQTDKDYYQLQAILEAERRDRGHDSEMIGDLQARITSLQEEVKHLKHNLEKVEGERKEAQDMLNHSEKEKN 135 (168)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333344444444444444444434444455556777788888888888888777665332111111111111222
Q ss_pred cchhhHHH-HHHHHHHHHHHhhh
Q 005043 654 RLEHDVAF-LKAVLDDTQKELHS 675 (717)
Q Consensus 654 ~~~~~~~~-~~~~~~~~~~~~~~ 675 (717)
.+|-|+-| |||+=.-.+.|.-.
T Consensus 136 ~~eid~~~eLKalQ~~~eqE~~~ 158 (168)
T 3o0z_A 136 NLEIDLNYKLKSLQQRLEQEVNE 158 (168)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhHHHHHHHHHHHHHHHHHHHH
Confidence 35655556 77777777766543
No 286
>1su3_A Interstitial collagenase; prodomain, hemopexin domain, exocite, structural proteomics in europe, spine, structural genomics, hydrolase; HET: EPE; 2.20A {Homo sapiens} SCOP: a.20.1.2 b.66.1.1 d.92.1.11 PDB: 2clt_A 1fbl_A*
Probab=79.92 E-value=49 Score=36.10 Aligned_cols=156 Identities=10% Similarity=0.031 Sum_probs=83.9
Q ss_pred EEEEECCEEEEEeccCCCCCCceEEEEEECCCCcEEEeeecC---CCCCCceeeEEEE--ECCEEEEEccccCCCCCcCc
Q 005043 151 SLISWGKKVLLVGGKTDSGSDRVSVWTFDTETECWSVVEAKG---DIPVARSGHTVVR--ASSVLILFGGEDGKRRKLND 225 (717)
Q Consensus 151 s~v~~~~~Iyv~GG~~~~~~~~~~v~~yD~~t~~W~~l~~~g---~~P~~R~~hs~~~--~~~~Lyv~GG~~~~~~~~~~ 225 (717)
+++..++.+|+|=|. -+|+++.....+....... .+|.. .. ++.. .++++|+|=| +.
T Consensus 267 Ai~~~~ge~y~Fkg~--------~~wr~~~~~~~~~p~~I~~~Wp~LP~~-iD-Aa~~~~~~g~~~fFKg--------~~ 328 (450)
T 1su3_A 267 AITTIRGEVMFFKDR--------FYMRTNPFYPEVELNFISVFWPQLPNG-LE-AAYEFADRDEVRFFKG--------NK 328 (450)
T ss_dssp EEEEETTEEEEEETT--------EEEECCTTSSSCEEEEGGGTCTTSCSS-CC-EEEEEGGGTEEEEEET--------TE
T ss_pred eEEecCCeEEEEeCC--------EEEEEcCCCCcccceehhHhccCCCCC-ee-EEEEEcCCCeEEEEeC--------CE
Confidence 566789999999775 4788876654443322211 23432 22 2222 2689999954 34
Q ss_pred EEEEEcCCCc--e-Eecc-CCCCCCC--CCcccEEEEECCcEEEEEcCCCCCCCCCeEEEEECCCCcEE-----EeecCC
Q 005043 226 LHMFDLKSLT--W-LPLH-CTGTGPS--PRSNHVAALYDDKNLLIFGGSSKSKTLNDLYSLDFETMIWT-----RIKIRG 294 (717)
Q Consensus 226 v~~yD~~t~~--W-~~l~-~~g~~P~--~R~~~aa~~~~~~~lyV~GG~~~~~~~ndv~~yd~~t~~W~-----~v~~~g 294 (717)
+|+|+..+.. + ..+. .. .+|. .....+.....++.+|+|-| +..|+||..+.+-. .+...
T Consensus 329 ~W~~~~~~~~~gyP~~i~~~~-g~P~~~~~IDAA~~~~~~~k~yfFkG-------~~yw~yd~~~~~~~~gYPk~I~~~- 399 (450)
T 1su3_A 329 YWAVQGQNVLHGYPKDIYSSF-GFPRTVKHIDAALSEENTGKTYFFVA-------NKYWRYDEYKRSMDPGYPKMIAHD- 399 (450)
T ss_dssp EEEEETTEECTTCSEEHHHHH-CCCTTCCCCCEEEEETTTTEEEEEET-------TEEEEEETTTTEECSSCSEEHHHH-
T ss_pred EEEecCCcccCCCceeeehhh-cCCCCCCccceEEEEcCCCeEEEEeC-------CEEEEEeCCCccccCCCCcchhhc-
Confidence 7777643210 0 0111 01 1222 22333332223344888877 36999997654321 11110
Q ss_pred CCCCCCcceEEEEECCEEEEEecCCCCCccCeEEEEECCCCcEEEe
Q 005043 295 FHPSPRAGCCGVLCGTKWYIAGGGSRKKRHAETLIFDILKGEWSVA 340 (717)
Q Consensus 295 ~~P~~R~~~sav~~~~~IyV~GG~~~~~~~~dv~~yD~~t~~W~~l 340 (717)
-+..+..--+++..++++|+|-| +..|+||..+.+-...
T Consensus 400 fpgip~~iDAA~~~~g~~YFFkg-------~~ywr~d~~~~~v~~~ 438 (450)
T 1su3_A 400 FPGIGHKVDAVFMKDGFFYFFHG-------TRQYKFDPKTKRILTL 438 (450)
T ss_dssp STTSCSCCSEEEEETTEEEEEET-------TEEEEEETTTTEEEEE
T ss_pred CCCCCCCccEEEEcCCeEEEEeC-------CEEEEEECCcceEecc
Confidence 01112223355557899999998 5689999988765543
No 287
>3ju4_A Endo-N-acetylneuraminidase; endonf, polysia, high-resolution, glycosidase, hydrolase; HET: SLB; 0.98A {Enterobacteria phage K1F} PDB: 3gvl_A* 3gvj_A* 3gvk_A* 1v0e_A 1v0f_A*
Probab=79.52 E-value=71 Score=34.27 Aligned_cols=196 Identities=17% Similarity=0.244 Sum_probs=110.1
Q ss_pred CCCCeEEeeecCCCCCCcceeEEEEECCEEEEEcccCCCCCcccEEE-EEcC------CCceEEccccccCCCCCCCCCC
Q 005043 72 NSENWMVLSIAGDKPIPRFNHAAAVIGNKMIVVGGESGNGLLDDVQV-LNFD------RFSWTAASSKLYLSPSSLPLKI 144 (717)
Q Consensus 72 ~s~~W~~l~~~g~~P~~R~~haav~~~~~lyV~GG~~~~~~~~~v~~-yd~~------t~~W~~l~~~~~~~~~~~~~~~ 144 (717)
....|+.-. .+..|..-.-|+.+.+++.=|.+|=..+.-....+=. |-+. .-.=+.++.. -.
T Consensus 268 ~~spW~~t~-L~~i~~vTe~HSFa~i~~~~fa~GyHnGDv~PRe~G~~yfs~~~~sp~~~vrr~i~se----------y~ 336 (670)
T 3ju4_A 268 HKSPWRKTD-LGLIPSVTEVHSFATIDNNGFAMGYHQGDVAPREVGLFYFPDAFNSPSNYVRRQIPSE----------YE 336 (670)
T ss_dssp TTSCCEEEE-CCSCTTCSEEEEEEECSSSCEEEEEEECSSSSCEEEEEEETTTTTCTTCCEEEECCGG----------GC
T ss_pred ccCCceecc-cccccceeeeeeeeEecCCceEEEeccCCCCcceeeEEEecccccCCcceeeeechhh----------hc
Confidence 445576543 2356666678888899888888875554444444322 2111 1122333331 12
Q ss_pred CcccceEEEEECCEEEEEeccCCCCCCceEEEEEECCCCcEEEeeecCCCCCCceee--EEEEECCEEEEEccccCCC--
Q 005043 145 PACRGHSLISWGKKVLLVGGKTDSGSDRVSVWTFDTETECWSVVEAKGDIPVARSGH--TVVRASSVLILFGGEDGKR-- 220 (717)
Q Consensus 145 p~r~~hs~v~~~~~Iyv~GG~~~~~~~~~~v~~yD~~t~~W~~l~~~g~~P~~R~~h--s~~~~~~~Lyv~GG~~~~~-- 220 (717)
+.....|+-.+++.+|+.--...+...-+.+.+-+.....|+.+.. |...... -.+..++.||+||-....+
T Consensus 337 ~~AsEPCvkyYdgvLyLtTRgt~~~~~GS~L~rs~d~Gq~w~slrf----p~nvHhtnlPFakvgD~l~mFgsERA~nEW 412 (670)
T 3ju4_A 337 PDASEPCIKYYDGVLYLITRGTRGDRLGSSLHRSRDIGQTWESLRF----PHNVHHTTLPFAKVGDDLIMFGSERAENEW 412 (670)
T ss_dssp TTEEEEEEEEETTEEEEEEEESCTTSCCCEEEEESSTTSSCEEEEC----TTCCCSSCCCEEEETTEEEEEEECSSTTCS
T ss_pred cccccchhhhhCCEEEEEecCcCCCCCcceeeeecccCCchhheec----cccccccCCCcceeCCEEEEEecccccccc
Confidence 2334567778899999986554444455578888888899999874 4222221 2345789999999763221
Q ss_pred -------CC---cCcEEEEEc-------CCCceEeccC---CCCCCCCCcccEEEEECCc-EEEEEcCCCC---------
Q 005043 221 -------RK---LNDLHMFDL-------KSLTWLPLHC---TGTGPSPRSNHVAALYDDK-NLLIFGGSSK--------- 270 (717)
Q Consensus 221 -------~~---~~~v~~yD~-------~t~~W~~l~~---~g~~P~~R~~~aa~~~~~~-~lyV~GG~~~--------- 270 (717)
.+ ....+.... +.-.|..+.. .|..-..-.+-..+++.+. ..|||||.+-
T Consensus 413 E~G~pD~RY~a~yPRtF~~r~nv~~W~~d~~ew~nItdqIYqG~ivNsavGVGSv~vKD~~lyyiFGgEd~~np~s~gdN 492 (670)
T 3ju4_A 413 EAGAPDDRYKASYPRTFYARLNVNNWNADDIEWVNITDQIYQGGIVNSGVGVGSVVVKDNYIYYMFGGEDHFNPWTYGDN 492 (670)
T ss_dssp STTCCCCCSSCBCCEEEEEEEETTTCCCTTCCCEEEEECBBCCSSSCCCSEEEEEEEETTEEEEEEEEBCSCCCCTTTTT
T ss_pred ccCCCcccccccCCceEEEEeecccCCccceEEEEeecceeccccccccccceeEEEeCCEEEEEecCcccCCccccccc
Confidence 11 112222222 2234555532 2444444445555666665 5579999641
Q ss_pred --------CCCCCeEEEEEC
Q 005043 271 --------SKTLNDLYSLDF 282 (717)
Q Consensus 271 --------~~~~ndv~~yd~ 282 (717)
.....++|+|.+
T Consensus 493 ~~k~~~~~~Ghp~dlY~~ri 512 (670)
T 3ju4_A 493 SAKDPFKSDGHPSDLYCYKM 512 (670)
T ss_dssp TTCCTTSTTCCCCEEEEEEE
T ss_pred cccCccccCCCCcceEEEEE
Confidence 234567888865
No 288
>2e7s_A RAB guanine nucleotide exchange factor SEC2; coiled coil, endocytosis/exocytosis complex; 3.00A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=79.51 E-value=3 Score=37.76 Aligned_cols=92 Identities=21% Similarity=0.237 Sum_probs=42.5
Q ss_pred HHhhHHHHHhhhhhHHhhHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhcccccccccCCccchhhHHHHHHHHHHHHH
Q 005043 592 ALVNREAAEKNFSSVLKSRQEMEKKLADSLKEMELLKEKLAGLELAQEEANSLSNIVHSDNVRLEHDVAFLKAVLDDTQK 671 (717)
Q Consensus 592 ~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 671 (717)
........-..|..--.-|.++|+.+..+..|+|.|---|= ||||+ ||... |.|+. -++-=.+..+.
T Consensus 44 ~~~e~~~L~~~l~eE~~~R~~aE~~~~~ie~ElE~LTasLF------eEAN~---MVa~a--r~~~~--~~e~r~~~L~~ 110 (135)
T 2e7s_A 44 RDDEVKRLREDIAKENELRTKAEEEADKLNKEVEDLTASLF------DEANN---LVADA--RMEKY--AIEILNKRLTE 110 (135)
T ss_dssp HHHHHHTHHHHHHHTTSHHHHHHHTTHHHHHHHHHHHHHHH------HHHHH---HHHHT--THHHH--HHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHH---HHHHH--HHHHH--HHHHHHHHHHH
Confidence 44444444455555566777788888888888887743221 55665 66554 33332 22222334555
Q ss_pred HhhhhccchhhccccceeeEEEeehhhhhhhh
Q 005043 672 ELHSTRGVLAGERARAFQLQVEVFHLKQRLQS 703 (717)
Q Consensus 672 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 703 (717)
.|+-++++|.. ||-.+-+||+-+|+
T Consensus 111 ql~e~e~ll~~-------lq~QL~~LK~v~~~ 135 (135)
T 2e7s_A 111 QLREKDMLLDT-------LTLQLKNLKKVMHS 135 (135)
T ss_dssp TTTHHHHCC-----------------------
T ss_pred HHHHHHHHHHH-------HHHHHHHHHHHhcC
Confidence 55666666654 56667788876653
No 289
>1npe_A Nidogen, entactin; glycoprotein, basement membrane, beta-propeller, EGF-like, structural protein; 2.30A {Mus musculus} SCOP: b.68.5.1
Probab=79.00 E-value=50 Score=32.17 Aligned_cols=196 Identities=9% Similarity=-0.039 Sum_probs=106.5
Q ss_pred eEEEEE--CCEEEEEeccCCCCCCceEEEEEECCCCcEEEeeecCCCCCCceeeEEEEE--CCEEEEEccccCCCCCcCc
Q 005043 150 HSLISW--GKKVLLVGGKTDSGSDRVSVWTFDTETECWSVVEAKGDIPVARSGHTVVRA--SSVLILFGGEDGKRRKLND 225 (717)
Q Consensus 150 hs~v~~--~~~Iyv~GG~~~~~~~~~~v~~yD~~t~~W~~l~~~g~~P~~R~~hs~~~~--~~~Lyv~GG~~~~~~~~~~ 225 (717)
++++.. ++.||+.-.. ...+++||+.+..-..+... .+ ..-+.+++. ++.||+.-. ..+.
T Consensus 39 ~gi~~d~~~~~ly~~d~~------~~~I~~~~~~g~~~~~~~~~-~~---~~p~~ia~d~~~~~lyv~d~------~~~~ 102 (267)
T 1npe_A 39 IGLAFDCVDKVVYWTDIS------EPSIGRASLHGGEPTTIIRQ-DL---GSPEGIALDHLGRTIFWTDS------QLDR 102 (267)
T ss_dssp EEEEEETTTTEEEEEETT------TTEEEEEESSSCCCEEEECT-TC---CCEEEEEEETTTTEEEEEET------TTTE
T ss_pred EEEEEecCCCEEEEEECC------CCEEEEEecCCCCcEEEEEC-CC---CCccEEEEEecCCeEEEEEC------CCCE
Confidence 455554 5789988542 23699999987653333211 11 123455554 579998843 2357
Q ss_pred EEEEEcCCCceEeccCCCCCCCCCcccEEEEEC-CcEEEEEcCCCCCCCCCeEEEEECCCCcEEEeecCCCCCCCCcceE
Q 005043 226 LHMFDLKSLTWLPLHCTGTGPSPRSNHVAALYD-DKNLLIFGGSSKSKTLNDLYSLDFETMIWTRIKIRGFHPSPRAGCC 304 (717)
Q Consensus 226 v~~yD~~t~~W~~l~~~g~~P~~R~~~aa~~~~-~~~lyV~GG~~~~~~~ndv~~yd~~t~~W~~v~~~g~~P~~R~~~s 304 (717)
+++||+....-..+... .+..| ..+++.. ++.||+..... ..+.|++++++...-+.+... + ...-.+
T Consensus 103 I~~~~~~g~~~~~~~~~-~~~~P---~~i~vd~~~g~lyv~~~~~---~~~~I~~~~~dg~~~~~~~~~---~-~~~P~g 171 (267)
T 1npe_A 103 IEVAKMDGTQRRVLFDT-GLVNP---RGIVTDPVRGNLYWTDWNR---DNPKIETSHMDGTNRRILAQD---N-LGLPNG 171 (267)
T ss_dssp EEEEETTSCSCEEEECS-SCSSE---EEEEEETTTTEEEEEECCS---SSCEEEEEETTSCCCEEEECT---T-CSCEEE
T ss_pred EEEEEcCCCCEEEEEEC-CCCCc---cEEEEeeCCCEEEEEECCC---CCcEEEEEecCCCCcEEEEEC---C-CCCCcE
Confidence 89999875443333211 11111 2334443 45688875321 135789999876543333321 1 112233
Q ss_pred EEEE--CCEEEEEecCCCCCccCeEEEEECCCCcEEEeecCCCCCCCCCcceEEEEEEeCCCcEEEEEcCCCCCCCCeEE
Q 005043 305 GVLC--GTKWYIAGGGSRKKRHAETLIFDILKGEWSVAITSPSSSVTSNKGFTLVLVQHKEKDFLVAFGGIKKEPSNQVE 382 (717)
Q Consensus 305 av~~--~~~IyV~GG~~~~~~~~dv~~yD~~t~~W~~l~~~p~~~~~~r~g~s~v~v~~~~~~~I~v~GG~~~~~~n~v~ 382 (717)
++.. +++||+.-... +.|++||+.+..-..+.. ... .-++++.. ++.||+.-.. .+.|.
T Consensus 172 ia~d~~~~~lyv~d~~~-----~~I~~~~~~g~~~~~~~~-~~~-----~P~gi~~d----~~~lyva~~~----~~~v~ 232 (267)
T 1npe_A 172 LTFDAFSSQLCWVDAGT-----HRAECLNPAQPGRRKVLE-GLQ-----YPFAVTSY----GKNLYYTDWK----TNSVI 232 (267)
T ss_dssp EEEETTTTEEEEEETTT-----TEEEEEETTEEEEEEEEE-CCC-----SEEEEEEE----TTEEEEEETT----TTEEE
T ss_pred EEEcCCCCEEEEEECCC-----CEEEEEecCCCceEEEec-CCC-----CceEEEEe----CCEEEEEECC----CCeEE
Confidence 4443 57899987543 469999997654333321 111 11333322 5778875432 24799
Q ss_pred EEEccCCcc
Q 005043 383 VLSIEKNES 391 (717)
Q Consensus 383 vyd~~~~eW 391 (717)
++|+.+.+-
T Consensus 233 ~~d~~~g~~ 241 (267)
T 1npe_A 233 AMDLAISKE 241 (267)
T ss_dssp EEETTTTEE
T ss_pred EEeCCCCCc
Confidence 999987663
No 290
>3hnw_A Uncharacterized protein; coiled-coil, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.20A {Eubacterium eligens}
Probab=78.88 E-value=8.3 Score=35.16 Aligned_cols=61 Identities=8% Similarity=0.058 Sum_probs=31.1
Q ss_pred HHHhcchhHHHHHHHhhHHHHHhhhhhHHhhHHHHHHHHHHHHHHHHHHHHHHhhhhhhhh
Q 005043 579 IRKNGILEGQLAAALVNREAAEKNFSSVLKSRQEMEKKLADSLKEMELLKEKLAGLELAQE 639 (717)
Q Consensus 579 ~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 639 (717)
-+++..|+.++.+-.......-..|.++-.-..+++++++++.++...|.++++.+|-..+
T Consensus 74 ~~~~~~L~~~l~~~~kE~~~lK~el~~~~~k~e~~~~e~~~l~~~~~~l~~~~~~le~~~~ 134 (138)
T 3hnw_A 74 KKMADSLSLDIENKDKEIYDLKHELIAAQIKAESSAKEIKELKSEINKYQKNIVKLETELN 134 (138)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445566666655444444444444444444455555555555555555555555554333
No 291
>3o0z_A RHO-associated protein kinase 1; coiled-coil, transferase; HET: MSE; 2.33A {Homo sapiens}
Probab=78.26 E-value=3.3 Score=38.93 Aligned_cols=100 Identities=28% Similarity=0.261 Sum_probs=60.2
Q ss_pred hcchhHHHHHHHhhHHHHHhhhhhHHhhHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhcccccccccCCccchhhHHH
Q 005043 582 NGILEGQLAAALVNREAAEKNFSSVLKSRQEMEKKLADSLKEMELLKEKLAGLELAQEEANSLSNIVHSDNVRLEHDVAF 661 (717)
Q Consensus 582 ~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 661 (717)
.-.||-||..+-+..-+--..-+-.=|+-.++-+.++......-+|.+|++.++-+. .-||.|++=
T Consensus 8 i~~LekQL~E~n~kLk~EsE~~~rlkK~~tEl~k~~~~~E~~~rELq~~~~~L~~~k--------------~~Leke~~~ 73 (168)
T 3o0z_A 8 LSQLQKQLEEANDLLRTESDTAVRLRKSHTEMSKSISQLESLNRELQERNRILENSK--------------SQTDKDYYQ 73 (168)
T ss_dssp --CTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------------HHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------------HHHHHHHHH
Confidence 456777887765433222222222334555666666666666677889999888443 346778888
Q ss_pred HHHHHHH----------HHHHhhhhccchhhccccceeeEEEeehhhhhhhhhc
Q 005043 662 LKAVLDD----------TQKELHSTRGVLAGERARAFQLQVEVFHLKQRLQSLE 705 (717)
Q Consensus 662 ~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 705 (717)
|-|-|+. +.+||.. |--.|+-|+-++|.|+..++
T Consensus 74 LQa~L~qEr~~r~q~se~~~elq~----------ri~~L~~El~~~k~~~~k~~ 117 (168)
T 3o0z_A 74 LQAILEAERRDRGHDSEMIGDLQA----------RITSLQEEVKHLKHNLEKVE 117 (168)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHH
Confidence 8777753 3344444 44445667778888777655
No 292
>1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A
Probab=77.96 E-value=92 Score=34.65 Aligned_cols=64 Identities=13% Similarity=0.149 Sum_probs=37.6
Q ss_pred CCEEEEEecCCCCCccCeEEEEECCCCcEEEeecCCCCCCCCCcceEEEEEEeCCCcEEEEEcCCCCCCCCeEEEEEccC
Q 005043 309 GTKWYIAGGGSRKKRHAETLIFDILKGEWSVAITSPSSSVTSNKGFTLVLVQHKEKDFLVAFGGIKKEPSNQVEVLSIEK 388 (717)
Q Consensus 309 ~~~IyV~GG~~~~~~~~dv~~yD~~t~~W~~l~~~p~~~~~~r~g~s~v~v~~~~~~~I~v~GG~~~~~~n~v~vyd~~~ 388 (717)
++++++.|+.++ .+.+||+.+..+..+.. .. .......+.+.. ++.+++.|+.++ .+.+|++.+
T Consensus 459 dg~~lasgs~D~-----~v~lwd~~~~~~~~~~~-~~----h~~~v~~v~fsp--dg~~las~s~d~----~v~~w~~~~ 522 (611)
T 1nr0_A 459 DKQFVAVGGQDS-----KVHVYKLSGASVSEVKT-IV----HPAEITSVAFSN--NGAFLVATDQSR----KVIPYSVAN 522 (611)
T ss_dssp TSCEEEEEETTS-----EEEEEEEETTEEEEEEE-EE----CSSCEEEEEECT--TSSEEEEEETTS----CEEEEEGGG
T ss_pred CCCEEEEeCCCC-----eEEEEEccCCceeeeec-cC----CCCceEEEEECC--CCCEEEEEcCCC----CEEEEEcCC
Confidence 678888887654 48889988776654332 00 111233444433 444666666543 578888775
No 293
>3sjl_D Methylamine dehydrogenase heavy chain; MAUG, C-heme, quinone cofactor, oxidoreductase-electron transport complex; HET: 0AF HEC MES; 1.63A {Paracoccus denitrificans} PDB: 2gc7_A* 2j55_H* 2j56_H* 2j57_G* 3l4m_D* 3l4o_D* 3orv_D* 3pxs_D* 3pxt_D* 3rlm_D* 2gc4_A* 3rn0_D* 3rn1_D* 3rmz_D* 3svw_D* 3sws_D* 3sxt_D* 3pxw_D* 3sle_D* 1mg2_A* ...
Probab=77.91 E-value=77 Score=33.76 Aligned_cols=121 Identities=15% Similarity=0.083 Sum_probs=64.4
Q ss_pred CCEEEEEeccCCCCCCceEEEEEECCCCcEEEeeecCCCCCCceeeEEEEE--CCEEEEEccccC---CCCCcCcEEEEE
Q 005043 156 GKKVLLVGGKTDSGSDRVSVWTFDTETECWSVVEAKGDIPVARSGHTVVRA--SSVLILFGGEDG---KRRKLNDLHMFD 230 (717)
Q Consensus 156 ~~~Iyv~GG~~~~~~~~~~v~~yD~~t~~W~~l~~~g~~P~~R~~hs~~~~--~~~Lyv~GG~~~---~~~~~~~v~~yD 230 (717)
++.+||.-.... ...+.|+++|+.+.+-...-+.|..| | +++. +..+|+...+.. .+...+.+.+||
T Consensus 44 ~~~vyV~~~~~~--~~~~~V~ViD~~t~~v~~~I~vG~~P-----~-va~spDG~~lyVan~~~~r~~~G~~~~~VsviD 115 (386)
T 3sjl_D 44 ARRVYVNDPAHF--AAVTQQFVIDGEAGRVIGMIDGGFLP-----N-PVVADDGSFIAHASTVFSRIARGERTDYVEVFD 115 (386)
T ss_dssp TTEEEEEECGGG--CSSEEEEEEETTTTEEEEEEEECSSC-----E-EEECTTSSCEEEEEEEEEETTEEEEEEEEEEEC
T ss_pred CCEEEEEcCccc--CCCCEEEEEECCCCeEEEEEECCCCC-----c-EEECCCCCEEEEEcccccccccCCCCCEEEEEE
Confidence 567888754311 11358999999998754332233333 4 4333 357888753211 111236699999
Q ss_pred cCCCceEe-ccCCC-C-CCC-CCcccEEEEECCcEEEEEcCCCCCCCCCeEEEEECCCCcEE
Q 005043 231 LKSLTWLP-LHCTG-T-GPS-PRSNHVAALYDDKNLLIFGGSSKSKTLNDLYSLDFETMIWT 288 (717)
Q Consensus 231 ~~t~~W~~-l~~~g-~-~P~-~R~~~aa~~~~~~~lyV~GG~~~~~~~ndv~~yd~~t~~W~ 288 (717)
+.+.+-.. +...+ . ... .+-...+..-+++++||.... ..+.|.++|+.+++-.
T Consensus 116 ~~t~~v~~~I~v~~g~r~~~g~~P~~~a~spDGk~lyVan~~----~~~~VsVID~~t~~vv 173 (386)
T 3sjl_D 116 PVTLLPTADIELPDAPRFLVGTYPWMTSLTPDGKTLLFYQFS----PAPAVGVVDLEGKAFK 173 (386)
T ss_dssp TTTCCEEEEEEETTCCCCCBSCCGGGEEECTTSSEEEEEECS----SSCEEEEEETTTTEEE
T ss_pred CCCCeEEEEEECCCccccccCCCCceEEEcCCCCEEEEEEcC----CCCeEEEEECCCCcEE
Confidence 99887433 22100 0 000 112223333466778886421 1256888888776643
No 294
>3ba0_A Macrophage metalloelastase; FULL-length MMP-12, hemopexin domain, catalytic domain, domain interaction., calcium, extracellular matrix; 3.00A {Homo sapiens} PDB: 2jxy_A
Probab=77.80 E-value=70 Score=33.76 Aligned_cols=155 Identities=13% Similarity=0.198 Sum_probs=82.7
Q ss_pred EEEEECCEEEEEeccCCCCCCceEEEEEECCCCcE--EEeeec-CCCCCCceeeEEEEE--CCEEEEEccccCCCCCcCc
Q 005043 151 SLISWGKKVLLVGGKTDSGSDRVSVWTFDTETECW--SVVEAK-GDIPVARSGHTVVRA--SSVLILFGGEDGKRRKLND 225 (717)
Q Consensus 151 s~v~~~~~Iyv~GG~~~~~~~~~~v~~yD~~t~~W--~~l~~~-g~~P~~R~~hs~~~~--~~~Lyv~GG~~~~~~~~~~ 225 (717)
+++.+++.+|+|=|. .+|+++.....- ..+... ..+|.. .. ++... ++++|+|-| +.
T Consensus 185 Av~~~~g~~~fFkg~--------~~Wr~~~~~~~~~p~~I~~~wpgLP~~-iD-Aa~~~~~~g~~~fFkg--------~~ 246 (365)
T 3ba0_A 185 AVTTVGNKIFFFKDR--------FFWLKVSERPKTSVNLISSLWPTLPSG-IE-AAYEIEARNQVFLFKD--------DK 246 (365)
T ss_dssp CEEEETTEEEEEETT--------EEEECCSSCCCCCEEEHHHHCSSCCSS-CC-EEEEEGGGTEEEEEET--------TE
T ss_pred eEEEcCCeEEEEeCC--------EEEEEcCCCccCCccchhhhccCCCCC-cc-EEEEecCCCEEEEEeC--------CE
Confidence 455679999999664 478886544221 111110 124422 22 23333 689999955 44
Q ss_pred EEEEEcCCCc--e-EeccCCCCCCCC--CcccEEEEEC-CcEEEEEcCCCCCCCCCeEEEEECCCCcEEE-----eecCC
Q 005043 226 LHMFDLKSLT--W-LPLHCTGTGPSP--RSNHVAALYD-DKNLLIFGGSSKSKTLNDLYSLDFETMIWTR-----IKIRG 294 (717)
Q Consensus 226 v~~yD~~t~~--W-~~l~~~g~~P~~--R~~~aa~~~~-~~~lyV~GG~~~~~~~ndv~~yd~~t~~W~~-----v~~~g 294 (717)
+|+|+..... + ..+...| +|.. ... ++.... ++.+|+|-| +..|+||..+.+-.. +.. +
T Consensus 247 yWr~~~~~~~~gyPk~I~~~G-lP~~~~~ID-AA~~~~~~~~~yfFkG-------~~yw~yd~~~~~v~~gyPk~I~~-~ 316 (365)
T 3ba0_A 247 YWLISNLRPEPNYPKSIHSFG-FPNFVKKID-AAVFNPRFYRTYFFVD-------NQYWRYDERRQMMDPGYPKLITK-N 316 (365)
T ss_dssp EEECSTTSCTTTCSEETTTTT-CCTTCCCCC-EEEEETTTTEEEEEET-------TEEEEEETTTTEECSSCCCCHHH-H
T ss_pred EEEEcCCcccCCCCceeeecc-CCCCCCCcC-EEEEeCCCCEEEEEEC-------CEEEEEeCCcceecCCCCcchhh-c
Confidence 6777643211 1 1222111 3331 223 333333 334888877 368999987653211 000 0
Q ss_pred CCCCCCcceEEEEE-CCEEEEEecCCCCCccCeEEEEECCCCcEEEe
Q 005043 295 FHPSPRAGCCGVLC-GTKWYIAGGGSRKKRHAETLIFDILKGEWSVA 340 (717)
Q Consensus 295 ~~P~~R~~~sav~~-~~~IyV~GG~~~~~~~~dv~~yD~~t~~W~~l 340 (717)
-+..+..--+++.. ++++|+|-| +..|+||..+.+-...
T Consensus 317 f~g~p~~iDaA~~~~~g~~YfFkg-------~~ywr~d~~~~~v~~~ 356 (365)
T 3ba0_A 317 FQGIGPKIDAVFYSKNKYYYFFQG-------SNQFEYDFLLQRITKT 356 (365)
T ss_dssp STTCCSSCSEEEEETTTEEEEEET-------TEEEEEETTTTEEEEE
T ss_pred CCCCCCccceeeEecCCcEEEEeC-------CEEEEEECCccEEecc
Confidence 01122233455555 899999988 4689999988776553
No 295
>2akf_A Coronin-1A; coiled coil, protein binding; 1.20A {Synthetic}
Probab=77.57 E-value=1.6 Score=28.31 Aligned_cols=22 Identities=41% Similarity=0.573 Sum_probs=20.1
Q ss_pred cchhhHHHHHHHHHHHHHHhhh
Q 005043 654 RLEHDVAFLKAVLDDTQKELHS 675 (717)
Q Consensus 654 ~~~~~~~~~~~~~~~~~~~~~~ 675 (717)
|||.||.-|.||..+.||-|+.
T Consensus 3 rlee~~r~l~~ivq~lq~r~dr 24 (32)
T 2akf_A 3 RLEEDVRNLNAIVQKLQERLDR 24 (32)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHH
Confidence 8999999999999999998764
No 296
>1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A
Probab=77.39 E-value=33 Score=39.61 Aligned_cols=154 Identities=10% Similarity=-0.046 Sum_probs=82.1
Q ss_pred ECCEEEEEeccCCCCCCceEEEEEECCCCcEEEeeecCCCCCCceeeEEEE--ECCEEEEEccccCCCCCcCcEEEEEcC
Q 005043 155 WGKKVLLVGGKTDSGSDRVSVWTFDTETECWSVVEAKGDIPVARSGHTVVR--ASSVLILFGGEDGKRRKLNDLHMFDLK 232 (717)
Q Consensus 155 ~~~~Iyv~GG~~~~~~~~~~v~~yD~~t~~W~~l~~~g~~P~~R~~hs~~~--~~~~Lyv~GG~~~~~~~~~~v~~yD~~ 232 (717)
.++.||+.-.. ...|+++++....-..+... .+..| ..+++ .++.||+.-- .....|+++++.
T Consensus 463 ~~g~LY~tD~~------~~~I~v~d~dg~~~~~l~~~-~~~~P---~giavDp~~g~ly~td~-----~~~~~I~~~~~d 527 (699)
T 1n7d_A 463 IHSNIYWTDSV------LGTVSVADTKGVKRKTLFRE-QGSKP---RAIVVDPVHGFMYWTDW-----GTPAKIKKGGLN 527 (699)
T ss_dssp SSSBCEECCTT------TSCEEEEBSSSCCEEEECCC-SSCCC---CCEECCSSSSCCEECCC-----SSSCCEEBCCSS
T ss_pred eCCcEEEEecc------CCeEEEEecCCCceEEEEeC-CCCCc---ceEEEccCCCcEEEccc-----CCCCeEEEEeCC
Confidence 46789886322 23589999887654444321 12222 22333 3577887631 112568888876
Q ss_pred CCceEeccCCCCCCCCCcccEEEEE-CCcEEEEEcCCCCCCCCCeEEEEECCCCcEEEeecCCCCCCCCcceEEEEECCE
Q 005043 233 SLTWLPLHCTGTGPSPRSNHVAALY-DDKNLLIFGGSSKSKTLNDLYSLDFETMIWTRIKIRGFHPSPRAGCCGVLCGTK 311 (717)
Q Consensus 233 t~~W~~l~~~g~~P~~R~~~aa~~~-~~~~lyV~GG~~~~~~~ndv~~yd~~t~~W~~v~~~g~~P~~R~~~sav~~~~~ 311 (717)
...-..+.. ..+..|. ++++- .++.||+.-.. .+.|+++++....-+.+.... .......++++.++.
T Consensus 528 G~~~~~l~~-~~l~~Pn---Glavd~~~~~LY~aD~~-----~~~I~~~d~dG~~~~~~~~~~--~~~~~P~glavd~~~ 596 (699)
T 1n7d_A 528 GVDIYSLVT-ENIQWPN---GITLDLLSGRLYWVDSK-----LHSISSIDVNGGNRKTILEDE--KRLAHPFSLAVFEDK 596 (699)
T ss_dssp SCCCCEESC-SSCSSCC---CEEECTTTCCEEEEETT-----TTEEEEECSSSSCCEEECCCS--SSCSSCCCCEEETTE
T ss_pred CCCeeEEEe-CCCCCcc---EEEEeccCCEEEEEecC-----CCeEEEEccCCCceEEEEecC--CcCCCceEeEEECCE
Confidence 543333211 1122221 23332 34458886532 357999999765444443210 111223455667889
Q ss_pred EEEEecCCCCCccCeEEEEECCCCcEEE
Q 005043 312 WYIAGGGSRKKRHAETLIFDILKGEWSV 339 (717)
Q Consensus 312 IyV~GG~~~~~~~~dv~~yD~~t~~W~~ 339 (717)
||+.-... ..|+++|+.+.+-..
T Consensus 597 lywtd~~~-----~~V~~~d~~~G~~~~ 619 (699)
T 1n7d_A 597 VFWTDIIN-----EAIFSANRLTGSDVN 619 (699)
T ss_dssp EEEECSTT-----TCEEEEETTTEEEEE
T ss_pred EEEEeCCC-----CeEEEEEccCCCceE
Confidence 99987433 358999987654433
No 297
>3a7p_A Autophagy protein 16; coiled-coil, coiled coil, cytoplasmic vesicle, protein transport, transport, vacuole; 2.80A {Saccharomyces cerevisiae}
Probab=77.28 E-value=1.3 Score=40.75 Aligned_cols=84 Identities=18% Similarity=0.227 Sum_probs=34.6
Q ss_pred HHHHHhhHHHHHhhhhhHHhhHH-----------H-HHHHHHHHHHHHHHHHHHHhhhhhhhhhhcccccccccCCccch
Q 005043 589 LAAALVNREAAEKNFSSVLKSRQ-----------E-MEKKLADSLKEMELLKEKLAGLELAQEEANSLSNIVHSDNVRLE 656 (717)
Q Consensus 589 ~~~~~~~~~~~e~~~~~~~~~~~-----------~-~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 656 (717)
|++.|+.|...|++++.+++.=. + ....++.+.+|...|++|+..++..=++-+.+--+++.+..-|-
T Consensus 30 l~~rL~~Rd~~E~~~~~l~~e~~~~~~~~~vs~~~~~~~~I~~L~~El~~l~~ki~dLeeel~eK~K~~e~l~DEl~aLq 109 (152)
T 3a7p_A 30 LIRRLTDRNDKEAHLNELFQDNSGAIGGNIVSHDDALLNTLAILQKELKSKEQEIRRLKEVIALKNKNTERLNAALISGT 109 (152)
T ss_dssp ---------------------------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhhhHHHHHHHHHHhhccCCCcccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56666666666666666554322 2 22345556666667777777777665555555555555555555
Q ss_pred hhHHHHHHHHHHHHHH
Q 005043 657 HDVAFLKAVLDDTQKE 672 (717)
Q Consensus 657 ~~~~~~~~~~~~~~~~ 672 (717)
-.+.-|..=+..+|+|
T Consensus 110 lq~n~lE~kl~kLq~E 125 (152)
T 3a7p_A 110 IENNVLQQKLSDLKKE 125 (152)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 4555555555555554
No 298
>2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae}
Probab=77.01 E-value=1.3e+02 Score=35.73 Aligned_cols=243 Identities=9% Similarity=0.032 Sum_probs=114.2
Q ss_pred CCEEEEEcccCCCCCcccEEEEEcCCCceEEccccccCCCCCCCCCCCcccceEEEEECCEEEEEeccCCCCCCceEEEE
Q 005043 98 GNKMIVVGGESGNGLLDDVQVLNFDRFSWTAASSKLYLSPSSLPLKIPACRGHSLISWGKKVLLVGGKTDSGSDRVSVWT 177 (717)
Q Consensus 98 ~~~lyV~GG~~~~~~~~~v~~yd~~t~~W~~l~~~~~~~~~~~~~~~p~r~~hs~v~~~~~Iyv~GG~~~~~~~~~~v~~ 177 (717)
++.+++.|+.++ .+.+||..+..-..... . ...-.+++...+.+++.|+.+ ..+.+
T Consensus 28 dg~~lAsgs~Dg-----~I~lw~~~~~~~~~~~~------------~-~~~V~~l~fspg~~L~S~s~D------~~v~l 83 (902)
T 2oaj_A 28 TQNLLAIATVTG-----EVHIYGQQQVEVVIKLE------------D-RSAIKEMRFVKGIYLVVINAK------DTVYV 83 (902)
T ss_dssp TTTEEEEEETTS-----EEEEECSTTCEEEEECS------------S-CCCEEEEEEETTTEEEEEETT------CEEEE
T ss_pred CCCEEEEEeCCC-----EEEEEeCCCcEEEEEcC------------C-CCCEEEEEEcCCCEEEEEECc------CeEEE
Confidence 456777777553 57778776543222111 0 011123333334455555542 36888
Q ss_pred EECCCCcEEEeeecCCCCCCceeeEEEEE-CCEEEEEccccCCCCCcCcEEEEEcCCCceEeccC-------CCCCCCCC
Q 005043 178 FDTETECWSVVEAKGDIPVARSGHTVVRA-SSVLILFGGEDGKRRKLNDLHMFDLKSLTWLPLHC-------TGTGPSPR 249 (717)
Q Consensus 178 yD~~t~~W~~l~~~g~~P~~R~~hs~~~~-~~~Lyv~GG~~~~~~~~~~v~~yD~~t~~W~~l~~-------~g~~P~~R 249 (717)
||+.+.+-...-. .+ .. -.+++.. ++..++.|+.+ ..+.+||+.+..-..... ........
T Consensus 84 Wd~~~~~~~~~~~---~~-~~-V~~v~~sp~g~~l~sgs~d------g~V~lwd~~~~~~~~~~i~~~~~~~~~~~~h~~ 152 (902)
T 2oaj_A 84 LSLYSQKVLTTVF---VP-GK-ITSIDTDASLDWMLIGLQN------GSMIVYDIDRDQLSSFKLDNLQKSSFFPAARLS 152 (902)
T ss_dssp EETTTCSEEEEEE---CS-SC-EEEEECCTTCSEEEEEETT------SCEEEEETTTTEEEEEEECCHHHHHTCSSSCCC
T ss_pred EECCCCcEEEEEc---CC-CC-EEEEEECCCCCEEEEEcCC------CcEEEEECCCCccccceeccccccccccccCCC
Confidence 9998876432211 11 11 1122222 45666666544 347889988765421110 00000011
Q ss_pred cccEEEEECC-cEEEEEcCCCCCCCCCeEEEEECCCCcEEEeecCCC---CCCC----------CcceEEEEE--CCEEE
Q 005043 250 SNHVAALYDD-KNLLIFGGSSKSKTLNDLYSLDFETMIWTRIKIRGF---HPSP----------RAGCCGVLC--GTKWY 313 (717)
Q Consensus 250 ~~~aa~~~~~-~~lyV~GG~~~~~~~ndv~~yd~~t~~W~~v~~~g~---~P~~----------R~~~sav~~--~~~Iy 313 (717)
.-.+++...+ ..+++.|+.+ ..+ .||+.+..-...-.... .|.. ......+.+ ++..+
T Consensus 153 ~V~sl~~sp~~~~~l~~g~~d-----g~v-lWd~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~h~~~V~~v~fspdg~~l 226 (902)
T 2oaj_A 153 PIVSIQWNPRDIGTVLISYEY-----VTL-TYSLVENEIKQSFIYELPPFAPGGDFSEKTNEKRTPKVIQSLYHPNSLHI 226 (902)
T ss_dssp CCCEEEEETTEEEEEEEECSS-----CEE-EEETTTTEEEEEECCCBCTTCCCSTTCCCTTSCBCCCEEEEEECTTSSEE
T ss_pred CeEEEEEccCCCCEEEEEeCC-----CcE-EEECCCCceEEEEecccCCcCCCcccccccccccCCCeEEEEEcCCCCEE
Confidence 1223444442 2366666654 347 99998876443221100 0100 011222333 67788
Q ss_pred EEecCCCCCccCeEEEEECCCCcEEEeecC---CCCCC-----C----CCcceEEEEEEe---CCCcEEEEEcCCCCCC-
Q 005043 314 IAGGGSRKKRHAETLIFDILKGEWSVAITS---PSSSV-----T----SNKGFTLVLVQH---KEKDFLVAFGGIKKEP- 377 (717)
Q Consensus 314 V~GG~~~~~~~~dv~~yD~~t~~W~~l~~~---p~~~~-----~----~r~g~s~v~v~~---~~~~~I~v~GG~~~~~- 377 (717)
+.|+.++. +.+||+.+.+-...... ....+ . .......+.+.. +++..+++.||.+...
T Consensus 227 asgs~Dg~-----i~lWd~~~g~~~~~r~l~~~~~~~~~~~~~~~~~~~~~~V~~v~w~~~~~pd~~~ll~sg~~~~~~~ 301 (902)
T 2oaj_A 227 ITIHEDNS-----LVFWDANSGHMIMARTVFETEINVPQPDYIRDSSTNAAKISKVYWMCENNPEYTSLLISHKSISRGD 301 (902)
T ss_dssp EEEETTCC-----EEEEETTTCCEEEEECSSCSCTTSCCTTCCCCCSSCCCEEEEEEEEECSSTTEEEEEEEEECSTTSS
T ss_pred EEEECCCe-----EEEEECCCCcEEEEEeecccccCCCCCcCCCCCccccCCeeEEEEEecCCCCCCEEEEeCCCCCCCC
Confidence 88887654 89999988765432111 00100 0 111233444432 1234788888875432
Q ss_pred CCeEEEEEc
Q 005043 378 SNQVEVLSI 386 (717)
Q Consensus 378 ~n~v~vyd~ 386 (717)
...+.+++.
T Consensus 302 ~~~v~~~~~ 310 (902)
T 2oaj_A 302 NQSLTMIDL 310 (902)
T ss_dssp CCCEEEEEE
T ss_pred CceEEEEec
Confidence 346667763
No 299
>1su3_A Interstitial collagenase; prodomain, hemopexin domain, exocite, structural proteomics in europe, spine, structural genomics, hydrolase; HET: EPE; 2.20A {Homo sapiens} SCOP: a.20.1.2 b.66.1.1 d.92.1.11 PDB: 2clt_A 1fbl_A*
Probab=77.00 E-value=31 Score=37.74 Aligned_cols=151 Identities=12% Similarity=0.083 Sum_probs=75.7
Q ss_pred EEEEECCEEEEEccccCCCCCcCcEEEEEcCCCceEeccCC---CCCCCCCcccEEEEE--CCcEEEEEcCCCCCCCCCe
Q 005043 202 TVVRASSVLILFGGEDGKRRKLNDLHMFDLKSLTWLPLHCT---GTGPSPRSNHVAALY--DDKNLLIFGGSSKSKTLND 276 (717)
Q Consensus 202 s~~~~~~~Lyv~GG~~~~~~~~~~v~~yD~~t~~W~~l~~~---g~~P~~R~~~aa~~~--~~~~lyV~GG~~~~~~~nd 276 (717)
+++.+++.+|+|-|. .+|+++.....+...... ..+|.. .. ++... +++ +|+|=|. .
T Consensus 267 Ai~~~~ge~y~Fkg~--------~~wr~~~~~~~~~p~~I~~~Wp~LP~~-iD-Aa~~~~~~g~-~~fFKg~-------~ 328 (450)
T 1su3_A 267 AITTIRGEVMFFKDR--------FYMRTNPFYPEVELNFISVFWPQLPNG-LE-AAYEFADRDE-VRFFKGN-------K 328 (450)
T ss_dssp EEEEETTEEEEEETT--------EEEECCTTSSSCEEEEGGGTCTTSCSS-CC-EEEEEGGGTE-EEEEETT-------E
T ss_pred eEEecCCeEEEEeCC--------EEEEEcCCCCcccceehhHhccCCCCC-ee-EEEEEcCCCe-EEEEeCC-------E
Confidence 456689999999662 345555433322211110 123322 22 22222 455 8888773 5
Q ss_pred EEEEECCC---CcEEEee-cCCCCCCCCcceEEEEE--CCEEEEEecCCCCCccCeEEEEECCCCcEE-----Eeec-CC
Q 005043 277 LYSLDFET---MIWTRIK-IRGFHPSPRAGCCGVLC--GTKWYIAGGGSRKKRHAETLIFDILKGEWS-----VAIT-SP 344 (717)
Q Consensus 277 v~~yd~~t---~~W~~v~-~~g~~P~~R~~~sav~~--~~~IyV~GG~~~~~~~~dv~~yD~~t~~W~-----~l~~-~p 344 (717)
+|+|+..+ +-=..+. ..+-+..+..--+++.. ++++|+|-| +..|+||..+.+-. .+.. .|
T Consensus 329 ~W~~~~~~~~~gyP~~i~~~~g~P~~~~~IDAA~~~~~~~k~yfFkG-------~~yw~yd~~~~~~~~gYPk~I~~~fp 401 (450)
T 1su3_A 329 YWAVQGQNVLHGYPKDIYSSFGFPRTVKHIDAALSEENTGKTYFFVA-------NKYWRYDEYKRSMDPGYPKMIAHDFP 401 (450)
T ss_dssp EEEEETTEECTTCSEEHHHHHCCCTTCCCCCEEEEETTTTEEEEEET-------TEEEEEETTTTEECSSCSEEHHHHST
T ss_pred EEEecCCcccCCCceeeehhhcCCCCCCccceEEEEcCCCeEEEEeC-------CEEEEEeCCCccccCCCCcchhhcCC
Confidence 88887432 1011222 11211112222244444 589999988 56999998754321 1110 11
Q ss_pred CCCCCCCcceEEEEEEeCCCcEEEEEcCCCCCCCCeEEEEEccCCc
Q 005043 345 SSSVTSNKGFTLVLVQHKEKDFLVAFGGIKKEPSNQVEVLSIEKNE 390 (717)
Q Consensus 345 ~~~~~~r~g~s~v~v~~~~~~~I~v~GG~~~~~~n~v~vyd~~~~e 390 (717)
. . +. ..-+++.. ++++|.|-|. ..|.||..+..
T Consensus 402 g-i--p~-~iDAA~~~---~g~~YFFkg~------~ywr~d~~~~~ 434 (450)
T 1su3_A 402 G-I--GH-KVDAVFMK---DGFFYFFHGT------RQYKFDPKTKR 434 (450)
T ss_dssp T-S--CS-CCSEEEEE---TTEEEEEETT------EEEEEETTTTE
T ss_pred C-C--CC-CccEEEEc---CCeEEEEeCC------EEEEEECCcce
Confidence 1 1 11 11222222 5788988885 78899876654
No 300
>3c7x_A Matrix metalloproteinase-14; membrane protein interaction, Pro-MMP-2, TIMP-2, metastasis, calcium, cleavage on PAIR of basic residues, hydrolase; 1.70A {Homo sapiens}
Probab=75.85 E-value=32 Score=33.00 Aligned_cols=153 Identities=14% Similarity=0.099 Sum_probs=76.4
Q ss_pred EEEEECCEEEEEccccCCCCCcCcEEEEEcCCCc---eEeccCC-CCCCCCCcccEEEEECCcEEEEEcCCCCCCCCCeE
Q 005043 202 TVVRASSVLILFGGEDGKRRKLNDLHMFDLKSLT---WLPLHCT-GTGPSPRSNHVAALYDDKNLLIFGGSSKSKTLNDL 277 (717)
Q Consensus 202 s~~~~~~~Lyv~GG~~~~~~~~~~v~~yD~~t~~---W~~l~~~-g~~P~~R~~~aa~~~~~~~lyV~GG~~~~~~~ndv 277 (717)
+++.+++.+|+|-| +.+|+++..... =..+... ..+|. ....+....+++ +|+|-| +..
T Consensus 10 A~~~~~g~~~fFkg--------~~~w~~~~~~~~~gyP~~I~~~w~glP~-~iDAa~~~~~g~-~yfFkg-------~~y 72 (196)
T 3c7x_A 10 TVAMLRGEMFVFKE--------RWFWRVRNNQVMDGYPMPIGQFWRGLPA-SINTAYERKDGK-FVFFKG-------DKH 72 (196)
T ss_dssp EEEEETTEEEEEET--------TEEEEEETTEECTTCSEEHHHHSTTCCS-SCCEEEECTTSC-EEEEET-------TEE
T ss_pred EEEEcCCEEEEEEC--------CEEEEEECCccCCCCceEhhHhccCCCC-CccEEEEeCCCc-EEEecC-------CEE
Confidence 34467899999965 346666532100 0111100 13443 333332223455 888876 358
Q ss_pred EEEECCCCc---EEEeecCC-CCCCCCcceEEEEE--CCEEEEEecCCCCCccCeEEEEECCCCcEEE-----eecCCCC
Q 005043 278 YSLDFETMI---WTRIKIRG-FHPSPRAGCCGVLC--GTKWYIAGGGSRKKRHAETLIFDILKGEWSV-----AITSPSS 346 (717)
Q Consensus 278 ~~yd~~t~~---W~~v~~~g-~~P~~R~~~sav~~--~~~IyV~GG~~~~~~~~dv~~yD~~t~~W~~-----l~~~p~~ 346 (717)
|+|+..+.. =..+...+ ..|..... ++... ++++|+|-| +..|+||..+.+-.. +..-+ .
T Consensus 73 w~~~~~~~~~gyPk~I~~~~~glP~~~ID-AA~~~~~~g~~yfFkG-------~~yw~yd~~~~~v~~gyPk~i~~~~-g 143 (196)
T 3c7x_A 73 WVFDEASLEPGYPKHIKELGRGLPTDKID-AALFWMPNGKTYFFRG-------NKYYRFNEELRAVDSEYPKNIKVWE-G 143 (196)
T ss_dssp EEEETTEECTTCSEEGGGTCBSCCSSCCS-EEEEETTTTEEEEEET-------TEEEEEETTTTEECTTCSEEGGGSB-T
T ss_pred EEEeCCcccCCCCeEhhhcCCCCCCCccc-EEEEEccCCEEEEEEC-------CEEEEEeCCcccccCCCCccHHHCC-C
Confidence 999854211 11222211 12322222 33333 689999988 468999987753211 11000 1
Q ss_pred CCCCCcceEEEEEEeCCCcEEEEEcCCCCCCCCeEEEEEccCCc
Q 005043 347 SVTSNKGFTLVLVQHKEKDFLVAFGGIKKEPSNQVEVLSIEKNE 390 (717)
Q Consensus 347 ~~~~r~g~s~v~v~~~~~~~I~v~GG~~~~~~n~v~vyd~~~~e 390 (717)
.| . ..-++ +...+++.+|+|=|. ..|.||..+.+
T Consensus 144 ip--~-~idaA-f~~~~~~~~YfFkg~------~y~r~d~~~~~ 177 (196)
T 3c7x_A 144 IP--E-SPRGS-FMGSDEVFTYFYKGN------KYWKFNNQKLK 177 (196)
T ss_dssp CC--S-SCSEE-EECTTSSEEEEEETT------EEEEEETTTTE
T ss_pred cC--C-Cccee-EEecCCCEEEEEECC------EEEEEECCcce
Confidence 11 1 11222 222334588988775 78999987654
No 301
>2hz6_A Endoplasmic reticulum to nucleus signalling 1 isoform 1 variant; triangular beta-sheet cluster, signaling protein; 3.10A {Homo sapiens}
Probab=75.17 E-value=1.8 Score=45.94 Aligned_cols=143 Identities=15% Similarity=0.091 Sum_probs=55.7
Q ss_pred EEECCEEEEEeccCCCCCCceEEEEEECCCCc--EEEeeecCCCCCCceeeEEEEECCEEEEEccccCCCCCcCcEEEEE
Q 005043 153 ISWGKKVLLVGGKTDSGSDRVSVWTFDTETEC--WSVVEAKGDIPVARSGHTVVRASSVLILFGGEDGKRRKLNDLHMFD 230 (717)
Q Consensus 153 v~~~~~Iyv~GG~~~~~~~~~~v~~yD~~t~~--W~~l~~~g~~P~~R~~hs~~~~~~~Lyv~GG~~~~~~~~~~v~~yD 230 (717)
++.++.||+.+. + ..++.+|..+++ |+.-. +.+ ..+.+..++.+|+.|+.+ ..++.+|
T Consensus 6 ~v~~~~v~~gs~-d------g~v~a~d~~tG~~~W~~~~--~~~-----~s~p~~~~g~~~v~~s~d------g~l~a~d 65 (369)
T 2hz6_A 6 TLPETLLFVSTL-D------GSLHAVSKRTGSIKWTLKE--DPV-----LQVPTHVEEPAFLPDPND------GSLYTLG 65 (369)
T ss_dssp --CTTEEEEEET-T------SEEEEEETTTCCEEEEEEC--CCS-----CCCC-----CCEEECTTT------CCEEEC-
T ss_pred eeeCCEEEEEcC-C------CEEEEEECCCCCEEEEecC--CCc-----eecceEcCCCEEEEeCCC------CEEEEEE
Confidence 344666766543 1 269999988765 87543 111 112234566788876433 3488999
Q ss_pred cCCC--ceEeccCCCCCCCCCcccEEEEECCcEEEEEcCCCCCCCCCeEEEEECCCCc--EEEeecCCCCCCCCcceEEE
Q 005043 231 LKSL--TWLPLHCTGTGPSPRSNHVAALYDDKNLLIFGGSSKSKTLNDLYSLDFETMI--WTRIKIRGFHPSPRAGCCGV 306 (717)
Q Consensus 231 ~~t~--~W~~l~~~g~~P~~R~~~aa~~~~~~~lyV~GG~~~~~~~ndv~~yd~~t~~--W~~v~~~g~~P~~R~~~sav 306 (717)
..++ .|..-. ..+... ..+.+...+..+| +|+.+ ..++.||+.+++ |+.-... . .+ .+
T Consensus 66 ~~tG~~~w~~~~---~~~~~~-~~sp~~~~~~~v~-~g~~d-----g~v~a~D~~tG~~~w~~~~~~---~-~~----~~ 127 (369)
T 2hz6_A 66 SKNNEGLTKLPF---TIPELV-QASPCRSSDGILY-MGKKQ-----DIWYVIDLLTGEKQQTLSSAF---A-DS----LS 127 (369)
T ss_dssp ----CCSEECSC---CHHHHH-TTCSCC-----CC-CCEEE-----EEEEEECCC-------------------------
T ss_pred CCCCceeeeeec---cCcccc-ccCceEecCCEEE-EEeCC-----CEEEEEECCCCcEEEEecCCC---c-cc----cc
Confidence 8654 465321 111000 0111111233244 34322 348889987654 6532211 0 01 11
Q ss_pred EECCEEEEEecCCCCCccCeEEEEECCCC--cEEE
Q 005043 307 LCGTKWYIAGGGSRKKRHAETLIFDILKG--EWSV 339 (717)
Q Consensus 307 ~~~~~IyV~GG~~~~~~~~dv~~yD~~t~--~W~~ 339 (717)
..++.+|+ |+.+ ..++.||+.+. .|+.
T Consensus 128 p~~~~v~~-~~~d-----g~v~a~d~~tG~~~W~~ 156 (369)
T 2hz6_A 128 PSTSLLYL-GRTE-----YTITMYDTKTRELRWNA 156 (369)
T ss_dssp -----EEE-EEEE-----EEEECCCSSSSSCCCEE
T ss_pred ccCCEEEE-EecC-----CEEEEEECCCCCEEEeE
Confidence 13455554 4322 34788888765 3775
No 302
>2p9w_A MAL S 1 allergenic protein; beta propeller; 1.35A {Malassezia sympodialis}
Probab=74.96 E-value=49 Score=34.65 Aligned_cols=142 Identities=14% Similarity=0.084 Sum_probs=75.3
Q ss_pred CCEEEEEeccCCCCCCceEEEEEECCCCc---EEEeeecCCCCCCceee-EEEEE--CCEEEEEccccCCCCCcCcEEEE
Q 005043 156 GKKVLLVGGKTDSGSDRVSVWTFDTETEC---WSVVEAKGDIPVARSGH-TVVRA--SSVLILFGGEDGKRRKLNDLHMF 229 (717)
Q Consensus 156 ~~~Iyv~GG~~~~~~~~~~v~~yD~~t~~---W~~l~~~g~~P~~R~~h-s~~~~--~~~Lyv~GG~~~~~~~~~~v~~y 229 (717)
++.+||.|.... ..++++++.... |-.-. ..+..+.+. .+++. ++.|++..+ ...+++|
T Consensus 147 ~GnaYVt~s~~~-----~~I~rV~pdG~~~~~~~~~~---~~~~~~~G~nGIv~~pdg~~Liv~~~-------~g~L~~f 211 (334)
T 2p9w_A 147 DGNSYVAFALGM-----PAIARVSADGKTVSTFAWES---GNGGQRPGYSGITFDPHSNKLIAFGG-------PRALTAF 211 (334)
T ss_dssp TSCEEEEEEESS-----CEEEEECTTSCCEEEEEECC---CCSSSCCSCSEEEEETTTTEEEEESS-------SSSEEEE
T ss_pred CCCEEEeCCCCC-----CeEEEEeCCCCEEeeeeecC---CCcccccCcceEEEeCCCCEEEEEcC-------CCeEEEE
Confidence 589999766531 369999998653 53322 122334433 44555 346777654 2459999
Q ss_pred EcCCCceEeccCC--CCC-CCCCccc-EEEEECCcEEEEEcCCCCCCCCCeEEEEECCCCcEEEeecCCCCCC---CCcc
Q 005043 230 DLKSLTWLPLHCT--GTG-PSPRSNH-VAALYDDKNLLIFGGSSKSKTLNDLYSLDFETMIWTRIKIRGFHPS---PRAG 302 (717)
Q Consensus 230 D~~t~~W~~l~~~--g~~-P~~R~~~-aa~~~~~~~lyV~GG~~~~~~~ndv~~yd~~t~~W~~v~~~g~~P~---~R~~ 302 (717)
|+.+-....++.. |.. ...-... ...-++++.++|..+. +.++.+-...+ |......+..|. ++..
T Consensus 212 D~~~pv~~~v~~~~~G~~~~~~~~dgilp~~~~G~vllV~~~~------~~~~~l~S~Dg-W~sa~~~g~~~~~~~~~g~ 284 (334)
T 2p9w_A 212 DVSKPYAWPEPVKINGDFGTLSGTEKIVTVPVGNESVLVGARA------PYAISFRSWDN-WKSANIKKTKRSELQNSGF 284 (334)
T ss_dssp ECSSSSCCCEECEESSCCCCCTTEEEEEEEEETTEEEEEEEET------TEEEEEECSST-TSEEEEEEEECGGGGSSCE
T ss_pred cCCCCcceeecccccCCcccccCcccccccccCCEEEEEEcCC------CCEEEEECCCC-cceeEEeeeecCccccCce
Confidence 9875332122211 211 0011111 2233677744665442 33555555555 987766544443 3433
Q ss_pred eEEEE----ECCEEEEEecCC
Q 005043 303 CCGVL----CGTKWYIAGGGS 319 (717)
Q Consensus 303 ~sav~----~~~~IyV~GG~~ 319 (717)
.+++. .+++||++.++-
T Consensus 285 tt~t~~~~~~~~~iYvv~~~f 305 (334)
T 2p9w_A 285 TAVADYYQGSEQGLYAVSAFF 305 (334)
T ss_dssp EEEEEEEETTEEEEEEEECCG
T ss_pred eEEEEeccccCCeEEEEeeec
Confidence 34444 578999998754
No 303
>3hxj_A Pyrrolo-quinoline quinone; all beta protein. incomplete 8-blade beta-propeller., struct genomics, PSI-2, protein structure initiative; 2.00A {Methanococcus maripaludis}
Probab=74.54 E-value=70 Score=31.63 Aligned_cols=139 Identities=12% Similarity=0.142 Sum_probs=69.9
Q ss_pred ECCEEEEEeccCCCCCCceEEEEEECC-CCcEEEeeecCCCCCCceeeEEEEE-CCEEEEEccccCCCCCcCcEEEEEcC
Q 005043 155 WGKKVLLVGGKTDSGSDRVSVWTFDTE-TECWSVVEAKGDIPVARSGHTVVRA-SSVLILFGGEDGKRRKLNDLHMFDLK 232 (717)
Q Consensus 155 ~~~~Iyv~GG~~~~~~~~~~v~~yD~~-t~~W~~l~~~g~~P~~R~~hs~~~~-~~~Lyv~GG~~~~~~~~~~v~~yD~~ 232 (717)
.++.||+.... ..+++||+. ...|..... .. ...+.+.. ++.||+.. . -..++.||+.
T Consensus 106 ~~~~l~v~t~~-------~~l~~~d~~g~~~~~~~~~-----~~-~~~~~~~~~~g~l~vgt-~------~~~l~~~d~~ 165 (330)
T 3hxj_A 106 FEDILYVTSMD-------GHLYAINTDGTEKWRFKTK-----KA-IYATPIVSEDGTIYVGS-N------DNYLYAINPD 165 (330)
T ss_dssp ETTEEEEECTT-------SEEEEECTTSCEEEEEECS-----SC-CCSCCEECTTSCEEEEC-T------TSEEEEECTT
T ss_pred ECCEEEEEecC-------CEEEEEcCCCCEEEEEcCC-----Cc-eeeeeEEcCCCEEEEEc-C------CCEEEEECCC
Confidence 48888875321 258999988 334765431 11 11222344 56777742 1 2468999987
Q ss_pred CC-ceEeccCCCCCCCCCcccEEEEECCcEEEEEcCCCCCCCCCeEEEEECCC-CcEEEeecCCCCCCCCcceEEEEE-C
Q 005043 233 SL-TWLPLHCTGTGPSPRSNHVAALYDDKNLLIFGGSSKSKTLNDLYSLDFET-MIWTRIKIRGFHPSPRAGCCGVLC-G 309 (717)
Q Consensus 233 t~-~W~~l~~~g~~P~~R~~~aa~~~~~~~lyV~GG~~~~~~~ndv~~yd~~t-~~W~~v~~~g~~P~~R~~~sav~~-~ 309 (717)
.. .|.... +... ..+.+...+..+|+.. ..+++||... ..|+.... .. ...+.+.. +
T Consensus 166 g~~~~~~~~-----~~~~-~~~~~~d~~g~l~v~t--------~~l~~~d~~g~~~~~~~~~-----~~-~~~~~~~~~~ 225 (330)
T 3hxj_A 166 GTEKWRFKT-----NDAI-TSAASIGKDGTIYFGS--------DKVYAINPDGTEKWNFYAG-----YW-TVTRPAISED 225 (330)
T ss_dssp SCEEEEEEC-----SSCC-CSCCEECTTCCEEEES--------SSEEEECTTSCEEEEECCS-----SC-CCSCCEECTT
T ss_pred CCEeEEEec-----CCCc-eeeeEEcCCCEEEEEe--------CEEEEECCCCcEEEEEccC-----Cc-ceeceEECCC
Confidence 22 265432 1111 1223333344366643 3589999542 34654321 11 12233333 4
Q ss_pred CEEEEEecCCCCCccCeEEEEECCCCc-EEE
Q 005043 310 TKWYIAGGGSRKKRHAETLIFDILKGE-WSV 339 (717)
Q Consensus 310 ~~IyV~GG~~~~~~~~dv~~yD~~t~~-W~~ 339 (717)
+.||+... + ..+++||+.... |..
T Consensus 226 g~l~v~t~-~-----~gl~~~~~~g~~~~~~ 250 (330)
T 3hxj_A 226 GTIYVTSL-D-----GHLYAINPDGTEKWRF 250 (330)
T ss_dssp SCEEEEET-T-----TEEEEECTTSCEEEEE
T ss_pred CeEEEEcC-C-----CeEEEECCCCCEeEEe
Confidence 57777532 1 348888875544 544
No 304
>3hrp_A Uncharacterized protein; NP_812590.1, structural genomics protein of unknown function structural genomics; HET: MSE; 1.70A {Bacteroides thetaiotaomicron vpi-5482}
Probab=74.00 E-value=95 Score=32.87 Aligned_cols=151 Identities=12% Similarity=0.033 Sum_probs=83.7
Q ss_pred CCEEEEEeccCCCCCCceEEEEEECCCCcEEEeeecCCCCCCceeeEEEEE--CCEEEEEccccCCCCCcCcEEEEEcCC
Q 005043 156 GKKVLLVGGKTDSGSDRVSVWTFDTETECWSVVEAKGDIPVARSGHTVVRA--SSVLILFGGEDGKRRKLNDLHMFDLKS 233 (717)
Q Consensus 156 ~~~Iyv~GG~~~~~~~~~~v~~yD~~t~~W~~l~~~g~~P~~R~~hs~~~~--~~~Lyv~GG~~~~~~~~~~v~~yD~~t 233 (717)
++.||+.... ...+.+||+.++.-..+...+ . ..+ +++. ++.||+..... . ..+++||+.+
T Consensus 141 ~g~lyv~d~~------~~~I~~id~~~g~~~~~~~~~--~---~~~-ia~~~~g~~l~~~d~~~-~----~~I~~~d~~~ 203 (409)
T 3hrp_A 141 NNTVLAYQRD------DPRVRLISVDDNKVTTVHPGF--K---GGK-PAVTKDKQRVYSIGWEG-T----HTVYVYMKAS 203 (409)
T ss_dssp TTEEEEEETT------TTEEEEEETTTTEEEEEEETC--C---BCB-CEECTTSSEEEEEBSST-T----CEEEEEEGGG
T ss_pred CCCEEEEecC------CCcEEEEECCCCEEEEeeccC--C---CCc-eeEecCCCcEEEEecCC-C----ceEEEEEcCC
Confidence 6789998653 236999999988777665321 1 222 3332 34677664321 1 2799999875
Q ss_pred Cc-eEeccCCCCCCCCCcccEEEEEC-CcEEEEEcCCCCCCCCCeEEEEECCCCcEEEeecCCCCCCCCcc-e-EEEEE-
Q 005043 234 LT-WLPLHCTGTGPSPRSNHVAALYD-DKNLLIFGGSSKSKTLNDLYSLDFETMIWTRIKIRGFHPSPRAG-C-CGVLC- 308 (717)
Q Consensus 234 ~~-W~~l~~~g~~P~~R~~~aa~~~~-~~~lyV~GG~~~~~~~ndv~~yd~~t~~W~~v~~~g~~P~~R~~-~-sav~~- 308 (717)
.. ...+.... .+....-+.+++.. ++.||+... .+.+++||+.+.....+...+........ . .++..
T Consensus 204 ~~~~~~~g~~~-~~~~~~p~~iav~p~~g~lyv~d~------~~~I~~~d~~~~~~~~~~~~~~~g~~~~~P~~~ia~~p 276 (409)
T 3hrp_A 204 GWAPTRIGQLG-STFSGKIGAVALDETEEWLYFVDS------NKNFGRFNVKTQEVTLIKQLELSGSLGTNPGPYLIYYF 276 (409)
T ss_dssp TTCEEEEEECC-TTSCSCCCBCEECTTSSEEEEECT------TCEEEEEETTTCCEEEEEECCCCSCCCCSSCCEEEEET
T ss_pred CceeEEeeecc-chhcCCcEEEEEeCCCCeEEEEEC------CCcEEEEECCCCCEEEEecccccCCCCCCccccEEEeC
Confidence 43 22331000 00112223344444 556888432 24799999998876655322111111222 1 44444
Q ss_pred -CCEEEEEecCCCCCccCeEEEEECCCC
Q 005043 309 -GTKWYIAGGGSRKKRHAETLIFDILKG 335 (717)
Q Consensus 309 -~~~IyV~GG~~~~~~~~dv~~yD~~t~ 335 (717)
++.||+..... ..|++||+...
T Consensus 277 ~~g~lyv~d~~~-----~~I~~~~~~g~ 299 (409)
T 3hrp_A 277 VDSNFYMSDQNL-----SSVYKITPDGE 299 (409)
T ss_dssp TTTEEEEEETTT-----TEEEEECTTCC
T ss_pred CCCEEEEEeCCC-----CEEEEEecCCC
Confidence 58999986533 46999998765
No 305
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=73.44 E-value=9.5 Score=43.05 Aligned_cols=12 Identities=17% Similarity=0.365 Sum_probs=6.0
Q ss_pred eEEEEEccCCcc
Q 005043 380 QVEVLSIEKNES 391 (717)
Q Consensus 380 ~v~vyd~~~~eW 391 (717)
.+..+++..|.|
T Consensus 346 ~L~~L~l~~N~~ 357 (597)
T 3oja_B 346 TLKNLTLSHNDW 357 (597)
T ss_dssp CCSEEECCSSCE
T ss_pred CCCEEEeeCCCC
Confidence 444555555554
No 306
>3iv1_A Tumor susceptibility gene 101 protein; coiled_COIL, tumorigenesis, CELL_cycle regulation, alternative splicing, cell cycle, cell division; HET: MSE; 2.50A {Homo sapiens}
Probab=73.12 E-value=26 Score=28.53 Aligned_cols=71 Identities=20% Similarity=0.204 Sum_probs=42.9
Q ss_pred HHHHHHHHHHHHH-HHhcchhHHHHHHHhhHHHHHhhhhhHHhhHHHHHHHHHHHHHHHHHHHHHHhhhhhh
Q 005043 567 IYQFYESKMAALI-RKNGILEGQLAAALVNREAAEKNFSSVLKSRQEMEKKLADSLKEMELLKEKLAGLELA 637 (717)
Q Consensus 567 ~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 637 (717)
|.-+-++|+..-+ .++++..+.|++--.-.++..+.-+.+-...++|+..-++..+.++.||+|.+.++.|
T Consensus 4 llSAVeDKLRrrl~E~~~q~qaEl~sLrrT~~EL~~G~~KL~~mi~~l~~E~~~l~~ni~~lk~K~~EL~~~ 75 (78)
T 3iv1_A 4 LISAVSDKLRWRMKEEMDRAQAELNALKRTEEDLKKGHQKLEEMVTRLDQEVAEVDKNIELLKKKDEELSSA 75 (78)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444555554433 2344555555555555666666666666666666666677777777777777776644
No 307
>1go4_E MAD1 (mitotic arrest deficient)-like 1; mitotic spindle checkpoint, cell cycle, mitosis, nuclear Pro; 2.05A {Homo sapiens} SCOP: h.1.22.1
Probab=73.05 E-value=8.5 Score=32.99 Aligned_cols=72 Identities=17% Similarity=0.126 Sum_probs=48.2
Q ss_pred chHHHHHHHHHHHHHHHhcchhHHHHHHHhhHHH----HHh----------hhhhHHhhHHHHHHHHHHHHHHHHHHHHH
Q 005043 565 SSIYQFYESKMAALIRKNGILEGQLAAALVNREA----AEK----------NFSSVLKSRQEMEKKLADSLKEMELLKEK 630 (717)
Q Consensus 565 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~e~----------~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 630 (717)
+.=+.....||..|-+.++.|..+.+.--..+|. .+= ..+-+..-+|+.++.++....|.|.||++
T Consensus 11 ~e~~~~lr~ei~~Le~E~~rLr~~~~~LE~~Le~~~l~Gd~~~~~TKVlH~~~NPa~~a~~~~~~~~e~Lq~E~erLr~~ 90 (100)
T 1go4_E 11 REEADTLRLKVEELEGERSRLEEEKRMLEAQLERRALQGDYDQSRTKVLHMSLNPTSVARQRLREDHSQLQAECERLRGL 90 (100)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCCSCCCTTTEEEEEESSCHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccCCccCeeeeecCChHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4445677777777777777666555544444444 110 22334455677889999999999999999
Q ss_pred Hhhhhh
Q 005043 631 LAGLEL 636 (717)
Q Consensus 631 ~~~~~~ 636 (717)
|..+|.
T Consensus 91 v~~lEe 96 (100)
T 1go4_E 91 LRAMER 96 (100)
T ss_dssp HTTCC-
T ss_pred HHHHhc
Confidence 999885
No 308
>2v71_A Nuclear distribution protein NUDE-like 1; developmental protein, nuclear protein, neurogenesis, cytosk LIS1 binding, differentiation; 2.24A {Rattus norvegicus}
Probab=72.75 E-value=42 Score=32.11 Aligned_cols=72 Identities=13% Similarity=0.079 Sum_probs=47.6
Q ss_pred CCchHHHHHHHHHHHHHHHhcchhHHHHHHHhhHH----HHHhhhhhHHhhHHHHHHHHHHHHHHHHHHHHHHhhh
Q 005043 563 GPSSIYQFYESKMAALIRKNGILEGQLAAALVNRE----AAEKNFSSVLKSRQEMEKKLADSLKEMELLKEKLAGL 634 (717)
Q Consensus 563 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~e~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 634 (717)
|..+-..+|+.+......+...|+..|..=..+=- +.|+.|...=+.-.++..+++....|.+.+|.|+...
T Consensus 7 s~~ee~~ywk~~~~~~~q~~~~le~El~EFqesSrELE~ELE~eL~~~Ek~~~~L~~~~~~L~~E~e~~k~K~~~~ 82 (189)
T 2v71_A 7 SLKEETAYWKELSMKYKQSFQEARDELVEFQEGSRELEAELEAQLVQAEQRNRDLQADNQRLKYEVEALKEKLEHQ 82 (189)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44556678888777777777777777665543322 3444555555556677777777777777777777443
No 309
>3oyo_A Hemopexin fold protein CP4; seeds, plant protein; 2.10A {Vigna unguiculata}
Probab=72.01 E-value=77 Score=30.99 Aligned_cols=105 Identities=13% Similarity=0.112 Sum_probs=56.3
Q ss_pred ECCEEEEEeccCCCCCCceEEEEEECCC----CcEEEeee--c---CCCCCC----ceeeEEEE--ECCEEEEEccccCC
Q 005043 155 WGKKVLLVGGKTDSGSDRVSVWTFDTET----ECWSVVEA--K---GDIPVA----RSGHTVVR--ASSVLILFGGEDGK 219 (717)
Q Consensus 155 ~~~~Iyv~GG~~~~~~~~~~v~~yD~~t----~~W~~l~~--~---g~~P~~----R~~hs~~~--~~~~Lyv~GG~~~~ 219 (717)
.++.+|+|=|. .+|+||..+ .....-+. . ..+|.. ... ++.. .++++|+|-|
T Consensus 69 ~~g~~~fFkg~--------~~W~~d~~~~t~~~~~~~gP~~I~~~wp~LP~~~~~~~ID-AA~~~~~~gk~yfFkG---- 135 (225)
T 3oyo_A 69 EASEAYVFSGN--------HSAYIDYAPGTTNDKILVGPTTIAEMFPVLNNTVFEDSID-SAFRSTKGKEVYLFKG---- 135 (225)
T ss_dssp STTEEEEEETT--------EEEEEECCTTSSCCEEEEEEEEHHHHCGGGTTSTTTSCCC-EEEECSSTTEEEEEET----
T ss_pred CCCeEEEEcCC--------EEEEEecccccCCCceecCchhhhhcCCCCCCcccccccc-eEEEECCCCcEEEEeC----
Confidence 58999999774 599998643 22221110 0 123321 222 2222 3689999965
Q ss_pred CCCcCcEEEEEcCCCceEecc--CCCCCC------CCCcccEEEEE-CCcEEEEEcCCCCCCCCCeEEEEECC
Q 005043 220 RRKLNDLHMFDLKSLTWLPLH--CTGTGP------SPRSNHVAALY-DDKNLLIFGGSSKSKTLNDLYSLDFE 283 (717)
Q Consensus 220 ~~~~~~v~~yD~~t~~W~~l~--~~g~~P------~~R~~~aa~~~-~~~~lyV~GG~~~~~~~ndv~~yd~~ 283 (717)
+..|+||..+++...-+ .....| .+..--++... .+..+|+|-|. ..|+||..
T Consensus 136 ----~~yw~~d~~~~~~~~gPk~I~~~fpg~~~~~f~~~iDAAf~~~~~g~~YfFkG~-------~ywr~d~~ 197 (225)
T 3oyo_A 136 ----NKYVRIAYDSKQLVGNIRNIGDGFPVLNGTEFESGIDACFASHKEPEAYLFKGQ-------NYVRIDFT 197 (225)
T ss_dssp ----TEEEEEETTTTEEEEEEEEHHHHCGGGTTSTTTTCCSEEEECSSTTEEEEEETT-------EEEEEECC
T ss_pred ----CeEEEEECCCCeecCCCcchhhcCCCcccccCCCCcCEEEEeCCCCEEEEEECC-------EEEEEeCC
Confidence 45789987665543210 000111 12222334443 34448998773 58999987
No 310
>1cxz_B Protein (PKN); protein-protein complex, antiparallel coiled-coil, signaling protein; HET: GSP; 2.20A {Homo sapiens} SCOP: a.2.6.1
Probab=71.89 E-value=10 Score=31.56 Aligned_cols=58 Identities=24% Similarity=0.238 Sum_probs=44.8
Q ss_pred HHHHhcchhHHHHHHHhhHHHHHhhhhhH---HhhHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 005043 578 LIRKNGILEGQLAAALVNREAAEKNFSSV---LKSRQEMEKKLADSLKEMELLKEKLAGLE 635 (717)
Q Consensus 578 ~~~~~~~~~~~~~~~~~~~~~~e~~~~~~---~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 635 (717)
+-.+.+.|-.|+.-.|.-||-||+=+--. -++|..++..|..+...+++|++.|.+++
T Consensus 23 le~~r~~ir~eI~KElKiKeGaENL~katt~~kk~~~~V~~eL~~sn~kl~~L~~eL~eL~ 83 (86)
T 1cxz_B 23 LELERERLRREIRKELKLKEGAENLRRATTDLGRSLGPVELLLRGSSRRLDLLHQQLQELH 83 (86)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhHHHhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 33444556677778888899998733322 45599999999999999999999999875
No 311
>3v64_C Agrin; beta propeller, laminin-G, signaling, protein binding; HET: NAG; 2.85A {Rattus norvegicus}
Probab=71.44 E-value=98 Score=31.94 Aligned_cols=186 Identities=6% Similarity=-0.042 Sum_probs=103.7
Q ss_pred CCEEEEEcccCCCCCcccEEEEEcCCCceEEccccccCCCCCCCCCCCcccceEEEE--ECCEEEEEeccCCCCCCceEE
Q 005043 98 GNKMIVVGGESGNGLLDDVQVLNFDRFSWTAASSKLYLSPSSLPLKIPACRGHSLIS--WGKKVLLVGGKTDSGSDRVSV 175 (717)
Q Consensus 98 ~~~lyV~GG~~~~~~~~~v~~yd~~t~~W~~l~~~~~~~~~~~~~~~p~r~~hs~v~--~~~~Iyv~GG~~~~~~~~~~v 175 (717)
++.||+.--. ...++++++.+.....+.... +..| .++++ .++.||+.-.. .+.+
T Consensus 84 ~~~ly~~D~~-----~~~I~r~~~~g~~~~~~~~~~--------~~~p----~glavd~~~g~ly~~d~~------~~~I 140 (349)
T 3v64_C 84 RELVFWSDVT-----LDRILRANLNGSNVEEVVSTG--------LESP----GGLAVDWVHDKLYWTDSG------TSRI 140 (349)
T ss_dssp TTEEEEEETT-----TTEEEEEETTSCSCEEEECSS--------CSCC----CEEEEETTTTEEEEEETT------TTEE
T ss_pred ccEEEEEecc-----CCceEEEecCCCCceEEEeCC--------CCCc----cEEEEecCCCeEEEEcCC------CCeE
Confidence 5789987432 246899999887655543210 1111 23444 37899988543 2368
Q ss_pred EEEECCCCcEEEeeecCCCCCCceeeEEEEE--CCEEEEEccccCCCCCcCcEEEEEcCCCceEeccCCCCCCCCCccc-
Q 005043 176 WTFDTETECWSVVEAKGDIPVARSGHTVVRA--SSVLILFGGEDGKRRKLNDLHMFDLKSLTWLPLHCTGTGPSPRSNH- 252 (717)
Q Consensus 176 ~~yD~~t~~W~~l~~~g~~P~~R~~hs~~~~--~~~Lyv~GG~~~~~~~~~~v~~yD~~t~~W~~l~~~g~~P~~R~~~- 252 (717)
+++++....-..+.. ..+..| ..+++. ++.||+.--.. ...|+++++....-+.+... .+ ...
T Consensus 141 ~~~~~dG~~~~~l~~-~~l~~P---~~iavdp~~g~ly~td~~~-----~~~I~r~~~dG~~~~~~~~~-~~----~~Pn 206 (349)
T 3v64_C 141 EVANLDGAHRKVLLW-QSLEKP---RAIALHPMEGTIYWTDWGN-----TPRIEASSMDGSGRRIIADT-HL----FWPN 206 (349)
T ss_dssp EEEETTSCSCEEEEC-TTCSCE---EEEEEETTTTEEEEEECSS-----SCEEEEEETTSCSCEESCCS-SC----SCEE
T ss_pred EEEcCCCCceEEEEe-CCCCCc---ceEEEecCcCeEEEeccCC-----CCEEEEEeCCCCCcEEEEEC-CC----CCcc
Confidence 999987655443321 122222 334444 67898874211 36799999876544433211 11 122
Q ss_pred EEEEE-CCcEEEEEcCCCCCCCCCeEEEEECCCCcEEEeecCCCCCCCCcceEEEEECCEEEEEecCCCCCccCeEEEEE
Q 005043 253 VAALY-DDKNLLIFGGSSKSKTLNDLYSLDFETMIWTRIKIRGFHPSPRAGCCGVLCGTKWYIAGGGSRKKRHAETLIFD 331 (717)
Q Consensus 253 aa~~~-~~~~lyV~GG~~~~~~~ndv~~yd~~t~~W~~v~~~g~~P~~R~~~sav~~~~~IyV~GG~~~~~~~~dv~~yD 331 (717)
+.++- .++.||+.-.. .+.|+++|++...-..+...+ ...-.++++.++.||+..-.. ..|+++|
T Consensus 207 Gla~d~~~~~lY~aD~~-----~~~I~~~~~dG~~~~~~~~~~----~~~P~giav~~~~ly~td~~~-----~~V~~~~ 272 (349)
T 3v64_C 207 GLTIDYAGRRMYWVDAK-----HHVIERANLDGSHRKAVISQG----LPHPFAITVFEDSLYWTDWHT-----KSINSAN 272 (349)
T ss_dssp EEEEETTTTEEEEEETT-----TTEEEEEETTSCSCEEEECSS----CSSEEEEEEETTEEEEEETTT-----TEEEEEE
T ss_pred eEEEeCCCCEEEEEECC-----CCEEEEEeCCCCceEEEEeCC----CCCceEEEEECCEEEEecCCC-----CeEEEEE
Confidence 23333 45568887432 357999998764433333221 112245566789999986533 3578887
Q ss_pred CCC
Q 005043 332 ILK 334 (717)
Q Consensus 332 ~~t 334 (717)
..+
T Consensus 273 ~~~ 275 (349)
T 3v64_C 273 KFT 275 (349)
T ss_dssp TTT
T ss_pred ccC
Confidence 544
No 312
>1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A
Probab=71.34 E-value=34 Score=39.52 Aligned_cols=219 Identities=12% Similarity=0.079 Sum_probs=108.9
Q ss_pred cEEEEEcCCCceEEccccccCCCCCCCCCCCcccceEEEEE--CCEEEEEeccCCCCCCceEEEEEECCCC----cEEEe
Q 005043 115 DVQVLNFDRFSWTAASSKLYLSPSSLPLKIPACRGHSLISW--GKKVLLVGGKTDSGSDRVSVWTFDTETE----CWSVV 188 (717)
Q Consensus 115 ~v~~yd~~t~~W~~l~~~~~~~~~~~~~~~p~r~~hs~v~~--~~~Iyv~GG~~~~~~~~~~v~~yD~~t~----~W~~l 188 (717)
.+.++++.+.....+... + ...+++++. ++.||+.--. ...|+++++.+. .-..+
T Consensus 387 ~I~~id~~~~~~~~~~~~---------~----~~p~gla~d~~~~~Ly~sD~~------~~~I~~~~~~g~~~~~~~~~~ 447 (699)
T 1n7d_A 387 EVRKMTLDRSEYTSLIPN---------L----RNVVALDTEVASNRIYWSDLS------QRMICSTQLDRAHGVSSYDTV 447 (699)
T ss_dssp C-CEECTTSCCEECCSCC---------C----TTCCCCEEETTTTEEEECCTT------TTSBEEEESCCCCC-CCCCCB
T ss_pred ceEEEeCCCCcceeeecc---------C----cceEEEccccccCeEEEEecC------CCeEEEEecCCCCCCcceEEE
Confidence 567777777666554431 1 112334443 6788887322 225888888751 11111
Q ss_pred eecCCCCCCceeeEEEE--ECCEEEEEccccCCCCCcCcEEEEEcCCCceEeccCCCCCCCCCcccEEEEE-CCcEEEEE
Q 005043 189 EAKGDIPVARSGHTVVR--ASSVLILFGGEDGKRRKLNDLHMFDLKSLTWLPLHCTGTGPSPRSNHVAALY-DDKNLLIF 265 (717)
Q Consensus 189 ~~~g~~P~~R~~hs~~~--~~~~Lyv~GG~~~~~~~~~~v~~yD~~t~~W~~l~~~g~~P~~R~~~aa~~~-~~~~lyV~ 265 (717)
.. ..+.. -.++++ .++.||+.-. ..+.|+++|+....-..+... .+..|+ .+++. .++.||+.
T Consensus 448 i~-~~~~~---P~glavD~~~g~LY~tD~------~~~~I~v~d~dg~~~~~l~~~-~~~~P~---giavDp~~g~ly~t 513 (699)
T 1n7d_A 448 IS-RDIQA---PDGLAVDWIHSNIYWTDS------VLGTVSVADTKGVKRKTLFRE-QGSKPR---AIVVDPVHGFMYWT 513 (699)
T ss_dssp CC-SCC-----CCCEECCCSSSBCEECCT------TTSCEEEEBSSSCCEEEECCC-SSCCCC---CEECCSSSSCCEEC
T ss_pred Ee-CCCCC---cceEEEEeeCCcEEEEec------cCCeEEEEecCCCceEEEEeC-CCCCcc---eEEEccCCCcEEEc
Confidence 10 01111 123333 4678888631 245689999886654443211 222232 22222 23447764
Q ss_pred cCCCCCCCCCeEEEEECCCCcEEEeecCCCCCCCCcceEEEEE--CCEEEEEecCCCCCccCeEEEEECCCCcEEEeecC
Q 005043 266 GGSSKSKTLNDLYSLDFETMIWTRIKIRGFHPSPRAGCCGVLC--GTKWYIAGGGSRKKRHAETLIFDILKGEWSVAITS 343 (717)
Q Consensus 266 GG~~~~~~~ndv~~yd~~t~~W~~v~~~g~~P~~R~~~sav~~--~~~IyV~GG~~~~~~~~dv~~yD~~t~~W~~l~~~ 343 (717)
.-. ....|++++++...-+.+... ....| .++++. +++||+.-... ..|+++|+....-+.+...
T Consensus 514 d~~----~~~~I~~~~~dG~~~~~l~~~-~l~~P---nGlavd~~~~~LY~aD~~~-----~~I~~~d~dG~~~~~~~~~ 580 (699)
T 1n7d_A 514 DWG----TPAKIKKGGLNGVDIYSLVTE-NIQWP---NGITLDLLSGRLYWVDSKL-----HSISSIDVNGGNRKTILED 580 (699)
T ss_dssp CCS----SSCCEEBCCSSSCCCCEESCS-SCSSC---CCEEECTTTCCEEEEETTT-----TEEEEECSSSSCCEEECCC
T ss_pred ccC----CCCeEEEEeCCCCCeeEEEeC-CCCCc---cEEEEeccCCEEEEEecCC-----CeEEEEccCCCceEEEEec
Confidence 311 124688888765443333221 01111 233332 57899987533 4689999876544444321
Q ss_pred CCCCCCCCcceEEEEEEeCCCcEEEEEcCCCCCCCCeEEEEEccCCc
Q 005043 344 PSSSVTSNKGFTLVLVQHKEKDFLVAFGGIKKEPSNQVEVLSIEKNE 390 (717)
Q Consensus 344 p~~~~~~r~g~s~v~v~~~~~~~I~v~GG~~~~~~n~v~vyd~~~~e 390 (717)
.. .....+++++. .+.||+.-.. .+.|.++++.+.+
T Consensus 581 ~~---~~~~P~glavd----~~~lywtd~~----~~~V~~~d~~~G~ 616 (699)
T 1n7d_A 581 EK---RLAHPFSLAVF----EDKVFWTDII----NEAIFSANRLTGS 616 (699)
T ss_dssp SS---SCSSCCCCEEE----TTEEEEECST----TTCEEEEETTTEE
T ss_pred CC---cCCCceEeEEE----CCEEEEEeCC----CCeEEEEEccCCC
Confidence 11 11223344444 4578877632 3478899876554
No 313
>2ece_A 462AA long hypothetical selenium-binding protein; beta propeller, structural genomics, unknown function; 2.00A {Sulfolobus tokodaii}
Probab=71.32 E-value=1.2e+02 Score=33.04 Aligned_cols=171 Identities=12% Similarity=0.028 Sum_probs=81.0
Q ss_pred CCEEEEEeccCCCCCCceEEEEEECCCC----cEEEeeecCCC----CCCceeeEEEEE-CCEEEEEccccCCCCCcCcE
Q 005043 156 GKKVLLVGGKTDSGSDRVSVWTFDTETE----CWSVVEAKGDI----PVARSGHTVVRA-SSVLILFGGEDGKRRKLNDL 226 (717)
Q Consensus 156 ~~~Iyv~GG~~~~~~~~~~v~~yD~~t~----~W~~l~~~g~~----P~~R~~hs~~~~-~~~Lyv~GG~~~~~~~~~~v 226 (717)
.+++|+-|... +.++++|+.++ +-...-....+ ... .-|++... ++ |||..--+..+...+.+
T Consensus 95 r~~l~v~~l~s------~~I~viD~~t~p~~p~~~k~ie~~~~~~~~g~s-~Ph~~~~~pdG-i~Vs~~g~~~g~~~g~v 166 (462)
T 2ece_A 95 RRFLIVPGLRS------SRIYIIDTKPNPREPKIIKVIEPEEVKKVSGYS-RLHTVHCGPDA-IYISALGNEEGEGPGGI 166 (462)
T ss_dssp SCEEEEEBTTT------CCEEEEECCSCTTSCEEEEEECHHHHHHHHCEE-EEEEEEECSSC-EEEEEEEETTSCSCCEE
T ss_pred CCEEEEccCCC------CeEEEEECCCCCCCceeeeeechhhcccccCCC-cccceeECCCe-EEEEcCCCcCCCCCCeE
Confidence 45677666542 46999999876 33222100001 111 23444443 45 77742222233446889
Q ss_pred EEEEcCCCceEeccCCCCCCCCCcccEEEEE-CCcEEEEEcC----------CCCC----CCCCeEEEEECCCCcEEEee
Q 005043 227 HMFDLKSLTWLPLHCTGTGPSPRSNHVAALY-DDKNLLIFGG----------SSKS----KTLNDLYSLDFETMIWTRIK 291 (717)
Q Consensus 227 ~~yD~~t~~W~~l~~~g~~P~~R~~~aa~~~-~~~~lyV~GG----------~~~~----~~~ndv~~yd~~t~~W~~v~ 291 (717)
.++|..+.+-..--..+..|.. +.+..... +++ +++.-- +... ...+.|.+||+.+++-...-
T Consensus 167 ~vlD~~T~~v~~~~~~~~~~~~-~~Yd~~~~p~~~-~mvsS~wg~p~~~~~g~~~~~~~~~~~d~V~v~D~~~~k~~~tI 244 (462)
T 2ece_A 167 LMLDHYSFEPLGKWEIDRGDQY-LAYDFWWNLPNE-VLVSSEWAVPNTIEDGLKLEHLKDRYGNRIHFWDLRKRKRIHSL 244 (462)
T ss_dssp EEECTTTCCEEEECCSBCTTCC-CCCCEEEETTTT-EEEECBCCCHHHHTTCCCTTTHHHHSCCEEEEEETTTTEEEEEE
T ss_pred EEEECCCCeEEEEEccCCCCcc-ccceEEECCCCC-EEEEccCcCccccccccchhhhhhccCCEEEEEECCCCcEeeEE
Confidence 9999997763322111122221 12223333 344 444432 2211 34688999999876433221
Q ss_pred cCCCCCCCCcceE--EEEE-----CCEEEEEecCCCCCccCeEEEEECCCCcEEEee
Q 005043 292 IRGFHPSPRAGCC--GVLC-----GTKWYIAGGGSRKKRHAETLIFDILKGEWSVAI 341 (717)
Q Consensus 292 ~~g~~P~~R~~~s--av~~-----~~~IyV~GG~~~~~~~~dv~~yD~~t~~W~~l~ 341 (717)
.. +..+.. -+.+ +..+||..-.+.....+.|++|..+...|....
T Consensus 245 ~v-----g~~g~~P~~i~f~~~Pdg~~aYV~~e~~~~~Lss~V~v~~~d~g~~~~~~ 296 (462)
T 2ece_A 245 TL-----GEENRMALELRPLHDPTKLMGFINMVVSLKDLSSSIWLWFYEDGKWNAEK 296 (462)
T ss_dssp ES-----CTTEEEEEEEEECSSTTCCEEEEEEEEETTTCCEEEEEEEEETTEEEEEE
T ss_pred ec-----CCCCCccceeEeeECCCCCEEEEEEeeeccCCCceEEEEEecCCceeEEE
Confidence 11 111111 1111 356677665222223345665555557787655
No 314
>4a5s_A Dipeptidyl peptidase 4 soluble form; hydrolase, type 2 diabetes, novartis compound NVP-BIV988; HET: N7F NAG MAN; 1.62A {Homo sapiens} PDB: 2qjr_A* 3f8s_A* 2qt9_A* 2qtb_A* 2rip_A* 1tk3_A* 1n1m_A* 1nu8_A* 1rwq_A* 1nu6_A* 1tkr_A* 1w1i_A* 2ajl_I* 2bgn_A* 2bub_A* 2ogz_A* 2ole_A* 2oqi_A* 3bjm_A* 3eio_A* ...
Probab=71.06 E-value=51 Score=37.82 Aligned_cols=107 Identities=16% Similarity=0.120 Sum_probs=53.9
Q ss_pred EEEEEECCCCcEEEeeecCCCCC-Cceee-EEEEECCEEEEEccccCC---CCCcCcEEEEEcCCCceEeccCCCCCCCC
Q 005043 174 SVWTFDTETECWSVVEAKGDIPV-ARSGH-TVVRASSVLILFGGEDGK---RRKLNDLHMFDLKSLTWLPLHCTGTGPSP 248 (717)
Q Consensus 174 ~v~~yD~~t~~W~~l~~~g~~P~-~R~~h-s~~~~~~~Lyv~GG~~~~---~~~~~~v~~yD~~t~~W~~l~~~g~~P~~ 248 (717)
.+++||+.++.=..+-....... ..... -...-+++.++++..+.. .....++++||+.+++...+. ..+.
T Consensus 37 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Spdg~~l~~~~~~~~~~r~~~~~~~~~~d~~~~~~~~l~---~~~~- 112 (740)
T 4a5s_A 37 NILVFNAEYGNSSVFLENSTFDEFGHSINDYSISPDGQFILLEYNYVKQWRHSYTASYDIYDLNKRQLITEE---RIPN- 112 (740)
T ss_dssp EEEEEETTTCCEEEEECTTTTTTCCSCCCEEEECTTSSEEEEEEEEEECSSSCEEEEEEEEETTTTEECCSS---CCCT-
T ss_pred cEEEEECCCCceEEEEechhhhhhcccccceEECCCCCEEEEEECCeeeEEEccceEEEEEECCCCcEEEcc---cCCC-
Confidence 69999999887544422111111 00110 111224554455443221 123467899999999876654 2221
Q ss_pred CcccEEEEE-CCcEEEEEcCCCCCCCCCeEEEEECCCCcEEEeec
Q 005043 249 RSNHVAALY-DDKNLLIFGGSSKSKTLNDLYSLDFETMIWTRIKI 292 (717)
Q Consensus 249 R~~~aa~~~-~~~~lyV~GG~~~~~~~ndv~~yd~~t~~W~~v~~ 292 (717)
. ....+.. +++ .++|+. + ++|+++|..++.-.++..
T Consensus 113 ~-~~~~~~SPdG~-~la~~~-~-----~~i~~~~~~~~~~~~lt~ 149 (740)
T 4a5s_A 113 N-TQWVTWSPVGH-KLAYVW-N-----NDIYVKIEPNLPSYRITW 149 (740)
T ss_dssp T-EEEEEECSSTT-CEEEEE-T-----TEEEEESSTTSCCEECCS
T ss_pred c-ceeeEECCCCC-EEEEEE-C-----CeEEEEECCCCceEEEcC
Confidence 1 2222233 444 233331 1 468888887776555544
No 315
>3he5_B Synzip2; heterodimeric coiled-coil, de novo protein; 1.75A {Artificial gene}
Probab=71.02 E-value=11 Score=26.74 Aligned_cols=45 Identities=27% Similarity=0.364 Sum_probs=29.7
Q ss_pred HHHHHHHHHHHHHhcchhHHHHHHHhhHHHHHhhhhhHHhhHHHHHHHHHHHHHHHHHHHHHHhhh
Q 005043 569 QFYESKMAALIRKNGILEGQLAAALVNREAAEKNFSSVLKSRQEMEKKLADSLKEMELLKEKLAGL 634 (717)
Q Consensus 569 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 634 (717)
.+..+||+.|...|-+| -+.-|.+|+-+|+...|+..|...+|.-
T Consensus 6 aylrkkiarlkkdnlql---------------------erdeqnlekiianlrdeiarlenevash 50 (52)
T 3he5_B 6 AYLRKKIARLKKDNLQL---------------------ERDEQNLEKIIANLRDEIARLENEVASH 50 (52)
T ss_dssp HHHHHHHHHHHHHHHHH---------------------HHHHHHHHHHHHHHHHHHHHHHHHHC--
T ss_pred HHHHHHHHHHhhhhhhh---------------------hhhHhhHHHHHHHHHHHHHHHHHHHhhc
Confidence 34567888888777766 3455677777777777777776666543
No 316
>2ece_A 462AA long hypothetical selenium-binding protein; beta propeller, structural genomics, unknown function; 2.00A {Sulfolobus tokodaii}
Probab=70.86 E-value=1.3e+02 Score=32.96 Aligned_cols=177 Identities=12% Similarity=0.010 Sum_probs=80.9
Q ss_pred CCEEEEEcccCCCCCcccEEEEEcCCC----ceEEcc-ccccCCCCCCCCCCCcccceEEEEE-CCEEEEEeccCCCCCC
Q 005043 98 GNKMIVVGGESGNGLLDDVQVLNFDRF----SWTAAS-SKLYLSPSSLPLKIPACRGHSLISW-GKKVLLVGGKTDSGSD 171 (717)
Q Consensus 98 ~~~lyV~GG~~~~~~~~~v~~yd~~t~----~W~~l~-~~~~~~~~~~~~~~p~r~~hs~v~~-~~~Iyv~GG~~~~~~~ 171 (717)
..++||-|..+ +.++++|..++ +-...- +..-. -+.....-|.+... ++ |||..--+..+..
T Consensus 95 r~~l~v~~l~s-----~~I~viD~~t~p~~p~~~k~ie~~~~~------~~~g~s~Ph~~~~~pdG-i~Vs~~g~~~g~~ 162 (462)
T 2ece_A 95 RRFLIVPGLRS-----SRIYIIDTKPNPREPKIIKVIEPEEVK------KVSGYSRLHTVHCGPDA-IYISALGNEEGEG 162 (462)
T ss_dssp SCEEEEEBTTT-----CCEEEEECCSCTTSCEEEEEECHHHHH------HHHCEEEEEEEEECSSC-EEEEEEEETTSCS
T ss_pred CCEEEEccCCC-----CeEEEEECCCCCCCceeeeeechhhcc------cccCCCcccceeECCCe-EEEEcCCCcCCCC
Confidence 45677777654 47999998766 222211 00000 00011123444443 45 8774222223334
Q ss_pred ceEEEEEECCCCcEEEeeecCCCCCCceeeEEEE--ECCEEEEEc---------cccCCC---CCcCcEEEEEcCCCceE
Q 005043 172 RVSVWTFDTETECWSVVEAKGDIPVARSGHTVVR--ASSVLILFG---------GEDGKR---RKLNDLHMFDLKSLTWL 237 (717)
Q Consensus 172 ~~~v~~yD~~t~~W~~l~~~g~~P~~R~~hs~~~--~~~~Lyv~G---------G~~~~~---~~~~~v~~yD~~t~~W~ 237 (717)
...+.++|..|.+-...-..+..|.. .++.... ..+.+|+.- |..... .+.+.+.+||+.+.+-.
T Consensus 163 ~g~v~vlD~~T~~v~~~~~~~~~~~~-~~Yd~~~~p~~~~mvsS~wg~p~~~~~g~~~~~~~~~~~d~V~v~D~~~~k~~ 241 (462)
T 2ece_A 163 PGGILMLDHYSFEPLGKWEIDRGDQY-LAYDFWWNLPNEVLVSSEWAVPNTIEDGLKLEHLKDRYGNRIHFWDLRKRKRI 241 (462)
T ss_dssp CCEEEEECTTTCCEEEECCSBCTTCC-CCCCEEEETTTTEEEECBCCCHHHHTTCCCTTTHHHHSCCEEEEEETTTTEEE
T ss_pred CCeEEEEECCCCeEEEEEccCCCCcc-ccceEEECCCCCEEEEccCcCccccccccchhhhhhccCCEEEEEECCCCcEe
Confidence 56899999998763322111112211 1211211 134444441 222211 34688999999876322
Q ss_pred eccCCCCCCCCCc--c--cEEEEE--CCcEEEEEcCCCCCCCCCeEEEEECCCCcEEEeec
Q 005043 238 PLHCTGTGPSPRS--N--HVAALY--DDKNLLIFGGSSKSKTLNDLYSLDFETMIWTRIKI 292 (717)
Q Consensus 238 ~l~~~g~~P~~R~--~--~aa~~~--~~~~lyV~GG~~~~~~~ndv~~yd~~t~~W~~v~~ 292 (717)
. .++.+.. . +....+ +++++||..-.+.....+.|++|..+.+.|..+..
T Consensus 242 ~-----tI~vg~~g~~P~~i~f~~~Pdg~~aYV~~e~~~~~Lss~V~v~~~d~g~~~~~~v 297 (462)
T 2ece_A 242 H-----SLTLGEENRMALELRPLHDPTKLMGFINMVVSLKDLSSSIWLWFYEDGKWNAEKV 297 (462)
T ss_dssp E-----EEESCTTEEEEEEEEECSSTTCCEEEEEEEEETTTCCEEEEEEEEETTEEEEEEE
T ss_pred e-----EEecCCCCCccceeEeeECCCCCEEEEEEeeeccCCCceEEEEEecCCceeEEEE
Confidence 2 1111111 1 111111 34567776542222233467666655688876653
No 317
>2pms_C Pneumococcal surface protein A (PSPA); lactoferrin, protein-protein metal transport, hydrolase; HET: NAG; 2.91A {Streptococcus pneumoniae} SCOP: h.4.19.1
Probab=70.73 E-value=20 Score=31.85 Aligned_cols=57 Identities=28% Similarity=0.293 Sum_probs=31.3
Q ss_pred HHHHHHHHHHHHHHHhhhhhhhhhhccccccccc-CCccchhhHHHHHHHHHHHHHHhh
Q 005043 617 LADSLKEMELLKEKLAGLELAQEEANSLSNIVHS-DNVRLEHDVAFLKAVLDDTQKELH 674 (717)
Q Consensus 617 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~ 674 (717)
|+++...+..|.-|+|.+|--=..+-++ |-|.+ +=--||.++|=-||=|+-||++|.
T Consensus 63 leeL~~ki~eL~~kvA~le~e~~~~e~~-~~~~~~~~e~le~~la~KkAEleKtqa~Ld 120 (125)
T 2pms_C 63 LEELSDKIDELDAEIAKLEDQLKAAEEN-NNVEDYFKEGLEKTIAAKKAELEKTEADLK 120 (125)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHCCCC-----CHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHhc-ccchHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444455555556666555221111111 11111 012467899999999999999986
No 318
>3swk_A Vimentin; cytoskeleton, intermediate filament, alpha-helix, structural; 1.70A {Homo sapiens}
Probab=70.68 E-value=15 Score=30.52 Aligned_cols=56 Identities=11% Similarity=0.127 Sum_probs=42.3
Q ss_pred HHHHHHHHHHHhcchhHHHHHHHhhHHHHHhhhhhHHhhHHHHHHHHHHHHHHHHH
Q 005043 571 YESKMAALIRKNGILEGQLAAALVNREAAEKNFSSVLKSRQEMEKKLADSLKEMEL 626 (717)
Q Consensus 571 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~ 626 (717)
...+|-.+...++.|+.|+.-+...-+....+...-+.-||.+|.-+...-|++..
T Consensus 5 Lr~qi~~l~~e~~~l~~e~dn~~~~~edfk~KyE~E~~~R~~~E~d~~~LrkdvD~ 60 (86)
T 3swk_A 5 LRRQVDQLTNDKARVEVERDNLAEDIMRLREKLQEEMLQREEAENTLQSFRQDVDN 60 (86)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTHHH
T ss_pred HHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHH
Confidence 34567778888888888888888777777778777788888888777666555544
No 319
>2dq0_A Seryl-tRNA synthetase; coiled-coil, homodimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: SSA; 2.60A {Pyrococcus horikoshii} PDB: 2dq1_A* 2dq2_A 2zr2_A* 2zr3_A
Probab=70.02 E-value=12 Score=41.23 Aligned_cols=41 Identities=22% Similarity=0.249 Sum_probs=22.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhhh-hhhhcccccccccC
Q 005043 611 QEMEKKLADSLKEMELLKEKLAGLELA-QEEANSLSNIVHSD 651 (717)
Q Consensus 611 ~~~~~~~~~~~~~~~~l~~~~~~~~~~-~~~~~~~~~~~~~~ 651 (717)
+++.++...+.+++..|++++..+|.. ++....|-|++|.+
T Consensus 72 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ipN~~~~~ 113 (455)
T 2dq0_A 72 DELLAKSREIVKRIGELENEVEELKKKIDYYLWRLPNITHPS 113 (455)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCCCCCTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCcc
Confidence 344444444444444444444444332 25566799999974
No 320
>3hxj_A Pyrrolo-quinoline quinone; all beta protein. incomplete 8-blade beta-propeller., struct genomics, PSI-2, protein structure initiative; 2.00A {Methanococcus maripaludis}
Probab=69.56 E-value=91 Score=30.79 Aligned_cols=177 Identities=10% Similarity=0.139 Sum_probs=88.7
Q ss_pred ECCEEEEEcccCCCCCcccEEEEEcC-CCceEEccccccCCCCCCCCCCCcccceEEEEE-CCEEEEEeccCCCCCCceE
Q 005043 97 IGNKMIVVGGESGNGLLDDVQVLNFD-RFSWTAASSKLYLSPSSLPLKIPACRGHSLISW-GKKVLLVGGKTDSGSDRVS 174 (717)
Q Consensus 97 ~~~~lyV~GG~~~~~~~~~v~~yd~~-t~~W~~l~~~~~~~~~~~~~~~p~r~~hs~v~~-~~~Iyv~GG~~~~~~~~~~ 174 (717)
.++.||+... + ..+++||+. ...|...... + ...+.+.. ++.||+. ... ..
T Consensus 106 ~~~~l~v~t~-~-----~~l~~~d~~g~~~~~~~~~~------------~--~~~~~~~~~~g~l~vg-t~~------~~ 158 (330)
T 3hxj_A 106 FEDILYVTSM-D-----GHLYAINTDGTEKWRFKTKK------------A--IYATPIVSEDGTIYVG-SND------NY 158 (330)
T ss_dssp ETTEEEEECT-T-----SEEEEECTTSCEEEEEECSS------------C--CCSCCEECTTSCEEEE-CTT------SE
T ss_pred ECCEEEEEec-C-----CEEEEEcCCCCEEEEEcCCC------------c--eeeeeEEcCCCEEEEE-cCC------CE
Confidence 4888887532 1 258999987 3367654321 0 11222334 5666663 321 26
Q ss_pred EEEEECCCC-cEEEeeecCCCCCCceeeEEEE-ECCEEEEEccccCCCCCcCcEEEEEcCC-CceEeccCCCCCCCCCcc
Q 005043 175 VWTFDTETE-CWSVVEAKGDIPVARSGHTVVR-ASSVLILFGGEDGKRRKLNDLHMFDLKS-LTWLPLHCTGTGPSPRSN 251 (717)
Q Consensus 175 v~~yD~~t~-~W~~l~~~g~~P~~R~~hs~~~-~~~~Lyv~GG~~~~~~~~~~v~~yD~~t-~~W~~l~~~g~~P~~R~~ 251 (717)
+++||+... .|.... +... ..+.+. .++.||+.. ..+++||... ..|..... ... .
T Consensus 159 l~~~d~~g~~~~~~~~-----~~~~-~~~~~~d~~g~l~v~t---------~~l~~~d~~g~~~~~~~~~-----~~~-~ 217 (330)
T 3hxj_A 159 LYAINPDGTEKWRFKT-----NDAI-TSAASIGKDGTIYFGS---------DKVYAINPDGTEKWNFYAG-----YWT-V 217 (330)
T ss_dssp EEEECTTSCEEEEEEC-----SSCC-CSCCEECTTCCEEEES---------SSEEEECTTSCEEEEECCS-----SCC-C
T ss_pred EEEECCCCCEeEEEec-----CCCc-eeeeEEcCCCEEEEEe---------CEEEEECCCCcEEEEEccC-----Ccc-e
Confidence 899998832 265432 1111 122333 356777753 4588999432 24665421 111 2
Q ss_pred cEEEEECCcEEEEEcCCCCCCCCCeEEEEECCCCc-EEEeecCCCCCCCCcceEEEEE-CCEEEEEecCCCCCccCeEEE
Q 005043 252 HVAALYDDKNLLIFGGSSKSKTLNDLYSLDFETMI-WTRIKIRGFHPSPRAGCCGVLC-GTKWYIAGGGSRKKRHAETLI 329 (717)
Q Consensus 252 ~aa~~~~~~~lyV~GG~~~~~~~ndv~~yd~~t~~-W~~v~~~g~~P~~R~~~sav~~-~~~IyV~GG~~~~~~~~dv~~ 329 (717)
.+.+...+..||+.. .+ ..+++||+.... |.. ... .... .+.+.. ++.||+... . ..+++
T Consensus 218 ~~~~~~~~g~l~v~t-~~-----~gl~~~~~~g~~~~~~-~~~----~~~~-~~~~~~~~g~l~v~t~-~-----ggl~~ 279 (330)
T 3hxj_A 218 TRPAISEDGTIYVTS-LD-----GHLYAINPDGTEKWRF-KTG----KRIE-SSPVIGNTDTIYFGSY-D-----GHLYA 279 (330)
T ss_dssp SCCEECTTSCEEEEE-TT-----TEEEEECTTSCEEEEE-ECS----SCCC-SCCEECTTSCEEEECT-T-----CEEEE
T ss_pred eceEECCCCeEEEEc-CC-----CeEEEECCCCCEeEEe-eCC----CCcc-ccceEcCCCeEEEecC-C-----CCEEE
Confidence 223334443466643 21 348888875544 443 221 1111 123333 677776542 1 24889
Q ss_pred EECCCC-cEEE
Q 005043 330 FDILKG-EWSV 339 (717)
Q Consensus 330 yD~~t~-~W~~ 339 (717)
||+... .|..
T Consensus 280 ~d~~g~~~~~~ 290 (330)
T 3hxj_A 280 INPDGTEKWNF 290 (330)
T ss_dssp ECTTSCEEEEE
T ss_pred ECCCCcEEEEE
Confidence 997533 4554
No 321
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=69.53 E-value=3.7 Score=45.34 Aligned_cols=100 Identities=15% Similarity=0.203 Sum_probs=56.2
Q ss_pred HHHHHHHHHHHHHhcchhHHHHHHHhhHHHHHhhhhhHHhhHH---------------HHHHHHHHHHHHHHHHHHHHh-
Q 005043 569 QFYESKMAALIRKNGILEGQLAAALVNREAAEKNFSSVLKSRQ---------------EMEKKLADSLKEMELLKEKLA- 632 (717)
Q Consensus 569 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~---------------~~~~~~~~~~~~~~~l~~~~~- 632 (717)
...+.|+ .+-++...+|+++.......++.+..+....+..+ +.-++..+..+|+|..+++..
T Consensus 357 ~~~~~~~-~l~~~~~~le~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 435 (487)
T 3oja_A 357 LRKQAKI-TLEQKKKALDEQVSNGRRAHAELDGTLQQAVGQIELQHATEEQSPLQLLRAIVKRYEEMYVEQQSVQNNAIR 435 (487)
T ss_dssp HHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSSCCCCCSSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHH-HHHHHHHHHHHHHHHHHHHHhhhhhhHHHhhchhhhcccccccCcHHHHHHHHHHHHHHHHHHHHHhhcchh
Confidence 3444444 78888889999998888777777665544422211 222333344444444444322
Q ss_pred hhhhhhhhhcccccccccCCccchhhHHHHHHHHHHHHHHhhhhccch
Q 005043 633 GLELAQEEANSLSNIVHSDNVRLEHDVAFLKAVLDDTQKELHSTRGVL 680 (717)
Q Consensus 633 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 680 (717)
..+.-||+.+. |+.+-+=||-++++..+++...+..+
T Consensus 436 ~~~~~~~~~~~-----------~~~~~~~~~~~~~~~~~~~~~~~~~~ 472 (487)
T 3oja_A 436 DWDMYQHKETQ-----------LAEENARLKKLNGEADLALASANATL 472 (487)
T ss_dssp HHHHHHHHHHH-----------HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhhhhhHHHH-----------HHHHhhhhhhhhhhhhhhhHhcccHH
Confidence 22233344443 55566667777777777766665443
No 322
>3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens}
Probab=69.37 E-value=1.8e+02 Score=34.08 Aligned_cols=219 Identities=11% Similarity=0.068 Sum_probs=117.3
Q ss_pred cEEEEEcCCCceEEccccccCCCCCCCCCCCcccceEEEEE--CCEEEEEeccCCCCCCceEEEEEECCCC----cEEEe
Q 005043 115 DVQVLNFDRFSWTAASSKLYLSPSSLPLKIPACRGHSLISW--GKKVLLVGGKTDSGSDRVSVWTFDTETE----CWSVV 188 (717)
Q Consensus 115 ~v~~yd~~t~~W~~l~~~~~~~~~~~~~~~p~r~~hs~v~~--~~~Iyv~GG~~~~~~~~~~v~~yD~~t~----~W~~l 188 (717)
.+.++++....+..+... .....++++. +++||+.-... ..|+++++... ....+
T Consensus 405 ~Ir~i~l~~~~~~~l~~~-------------~~~~~gl~~d~~~~~lY~sD~~~------~~I~~~~l~g~~~~~~~~~v 465 (791)
T 3m0c_C 405 EVRKMTLDRSEYTSLIPN-------------LRNVVALDTEVASNRIYWSDLSQ------RMICSTQLDRAHGVSSYDTV 465 (791)
T ss_dssp SEEEECTTSCCCEEEECS-------------CSSEEEEEEETTTTEEEEEETTT------TEEEEEEC--------CEEE
T ss_pred ceeEeeccCCcceeeecC-------------CCceEEEeecccCCeeEEeeccc------eeEEEEeccCCCCCcceeEE
Confidence 466677776666655431 1112344443 58899985432 36888887652 22332
Q ss_pred eecCCCCCCceeeEEEE--ECCEEEEEccccCCCCCcCcEEEEEcCCCceEeccCCCCCCCCCcccEEEEE-CCcEEEEE
Q 005043 189 EAKGDIPVARSGHTVVR--ASSVLILFGGEDGKRRKLNDLHMFDLKSLTWLPLHCTGTGPSPRSNHVAALY-DDKNLLIF 265 (717)
Q Consensus 189 ~~~g~~P~~R~~hs~~~--~~~~Lyv~GG~~~~~~~~~~v~~yD~~t~~W~~l~~~g~~P~~R~~~aa~~~-~~~~lyV~ 265 (717)
... .+.. -.++++ .++.||+.-. ..+.|+++++....-..+.. ..+..|+ .+++. .++.||+.
T Consensus 466 i~~-~l~~---P~GLAvD~~~~~LY~tD~------~~~~I~v~~ldG~~~~~l~~-~~l~~P~---gIaVDp~~g~LYwt 531 (791)
T 3m0c_C 466 ISR-DIQA---PDGLAVDWIHSNIYWTDS------VLGTVSVADTKGVKRKTLFR-ENGSKPR---AIVVDPVHGFMYWT 531 (791)
T ss_dssp ECS-SCSC---CCEEEEETTTTEEEEEET------TTTEEEEEETTSSSEEEEEE-CTTCCEE---EEEEETTTTEEEEE
T ss_pred Eec-CCCC---cceeeeeecCCcEEEEec------CCCeEEEEeCCCCeEEEEEe-CCCCCcc---eEEEecCCCCEEEe
Confidence 210 1221 123444 3679999842 24679999998665544421 1222232 33333 23458876
Q ss_pred cCCCCCCCCCeEEEEECCCCcEEEeecCCCCCCCCcceEEEEE--CCEEEEEecCCCCCccCeEEEEECCCCcEEEeecC
Q 005043 266 GGSSKSKTLNDLYSLDFETMIWTRIKIRGFHPSPRAGCCGVLC--GTKWYIAGGGSRKKRHAETLIFDILKGEWSVAITS 343 (717)
Q Consensus 266 GG~~~~~~~ndv~~yd~~t~~W~~v~~~g~~P~~R~~~sav~~--~~~IyV~GG~~~~~~~~dv~~yD~~t~~W~~l~~~ 343 (717)
--. ....|++++++...-+.+...+ + ..-.++++. +++||+.-.. ...|+++|+....-..+...
T Consensus 532 D~g----~~~~I~~~~~dG~~~~~lv~~~-l---~~P~GLavD~~~~~LYwaD~~-----~~~I~~~d~dG~~~~~v~~~ 598 (791)
T 3m0c_C 532 DWG----TPAKIKKGGLNGVDIYSLVTEN-I---QWPNGITLDLLSGRLYWVDSK-----LHSISSIDVNGGNRKTILED 598 (791)
T ss_dssp ECS----SSCEEEEEETTSCCEEEEECSS-C---SCEEEEEEETTTTEEEEEETT-----TTEEEEEETTSCSCEEEEEC
T ss_pred cCC----CCCeEEEEecCCCceEEEEeCC-C---CCceEEEEecCCCeEEEEeCC-----CCcEEEEecCCCceEEEecC
Confidence 411 1257999999776555554321 1 111234443 6899998643 25699999976544444322
Q ss_pred CCCCCCCCcceEEEEEEeCCCcEEEEEcCCCCCCCCeEEEEEccCCc
Q 005043 344 PSSSVTSNKGFTLVLVQHKEKDFLVAFGGIKKEPSNQVEVLSIEKNE 390 (717)
Q Consensus 344 p~~~~~~r~g~s~v~v~~~~~~~I~v~GG~~~~~~n~v~vyd~~~~e 390 (717)
... ....+++++. +++||+.-.. .+.|+.+|..+.+
T Consensus 599 ~~~---l~~P~glav~----~~~lYwtD~~----~~~I~~~dk~tG~ 634 (791)
T 3m0c_C 599 EKR---LAHPFSLAVF----EDKVFWTDII----NEAIFSANRLTGS 634 (791)
T ss_dssp TTT---TSSEEEEEEE----TTEEEEEETT----TTEEEEEETTTCC
T ss_pred CCc---cCCCCEEEEe----CCEEEEEECC----CCEEEEEeCCCCc
Confidence 111 2234555554 6688877532 3478888876554
No 323
>1z68_A Fibroblast activation protein, alpha subunit; seprase, fibroblast activation protein alpha,fapalpha, dipeptidylpeptidase,S9B; HET: NAG NDG; 2.60A {Homo sapiens}
Probab=68.27 E-value=1.6e+02 Score=33.12 Aligned_cols=152 Identities=9% Similarity=-0.063 Sum_probs=69.4
Q ss_pred eEEEEEECCCCc---EEEeeecCCC-CCCceeeEEEEE-CCEEEEEccccCCCCCcCcEEEEE----cCCCceEeccC--
Q 005043 173 VSVWTFDTETEC---WSVVEAKGDI-PVARSGHTVVRA-SSVLILFGGEDGKRRKLNDLHMFD----LKSLTWLPLHC-- 241 (717)
Q Consensus 173 ~~v~~yD~~t~~---W~~l~~~g~~-P~~R~~hs~~~~-~~~Lyv~GG~~~~~~~~~~v~~yD----~~t~~W~~l~~-- 241 (717)
..++++|+.+.. |..+.....+ ........++.. ++++++....... ....++.+| +.+.++..+..
T Consensus 224 ~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SpD~~~~~~~~~~~~--~~~~l~~~d~~~~~~~g~~~~~~~~~ 301 (719)
T 1z68_A 224 VRIFIIDTTYPAYVGPQEVPVPAMIASSDYYFSWLTWVTDERVCLQWLKRVQ--NVSVLSICDFREDWQTWDCPKTQEHI 301 (719)
T ss_dssp EEEEEEESSCHHHHCCEECCCCHHHHTSCEEEEEEEESSSSEEEEEEEESST--TEEEEEEEEECSSSSSEECCGGGEEE
T ss_pred eEEEEEECCCCCccceeEccCCccCCCCcceEEEeEEeCCCeEEEEEecccc--CeEEEEEEcccCCCCCCceEEEEecc
Confidence 378899988765 2233210000 011112222222 4566555222111 235799999 77776655431
Q ss_pred -CCCCCCCCcc-----cEEEEECCcEEEEE-cCCCCCCCCCeEEEEECCCCcEEEeecCCCCCCCCcceEEEEECCEEEE
Q 005043 242 -TGTGPSPRSN-----HVAALYDDKNLLIF-GGSSKSKTLNDLYSLDFETMIWTRIKIRGFHPSPRAGCCGVLCGTKWYI 314 (717)
Q Consensus 242 -~g~~P~~R~~-----~aa~~~~~~~lyV~-GG~~~~~~~ndv~~yd~~t~~W~~v~~~g~~P~~R~~~sav~~~~~IyV 314 (717)
.+ ...... ..+..-+++.+++. +..++ ...++.+|+.+.....+... .. .........++.||+
T Consensus 302 ~~~--~~~~~~~~~~~~~~~spdg~~l~~~~~~~~g---~~~l~~~~~~~~~~~~lt~~---~~-~v~~~~~~d~~~i~~ 372 (719)
T 1z68_A 302 EES--RTGWAGGFFVSTPVFSYDAISYYKIFSDKDG---YKHIHYIKDTVENAIQITSG---KW-EAINIFRVTQDSLFY 372 (719)
T ss_dssp EEC--SSSCSSSSSCCCCEECTTSSCEEEEEECTTS---CEEEEEESSCSTTCEECSCS---SS-CEEEEEEECSSEEEE
T ss_pred ccc--CCceEccccCCccEECCCCCeEEEEEEccCC---ceEEEEEECCCCceEecccC---ce-EEEEEEEEeCCEEEE
Confidence 01 011111 12222244544443 32222 35799999988876666431 11 111112223456666
Q ss_pred EecCC-CCCccCeEEEEECCCC
Q 005043 315 AGGGS-RKKRHAETLIFDILKG 335 (717)
Q Consensus 315 ~GG~~-~~~~~~dv~~yD~~t~ 335 (717)
.+... .......+|..+..+.
T Consensus 373 ~~~~~~~~~~~~~l~~~~~~~g 394 (719)
T 1z68_A 373 SSNEFEEYPGRRNIYRISIGSY 394 (719)
T ss_dssp EESCGGGCTTCBEEEEEECSSS
T ss_pred EEecCCCCCceEEEEEEeCCCC
Confidence 55430 1122346788887554
No 324
>3ju4_A Endo-N-acetylneuraminidase; endonf, polysia, high-resolution, glycosidase, hydrolase; HET: SLB; 0.98A {Enterobacteria phage K1F} PDB: 3gvl_A* 3gvj_A* 3gvk_A* 1v0e_A 1v0f_A*
Probab=68.12 E-value=1.3e+02 Score=32.21 Aligned_cols=209 Identities=14% Similarity=0.204 Sum_probs=118.2
Q ss_pred EEEEE--CCCCcEEEeeecCCCCCCceeeEEEEECCEEEEEccccCCCCCcCcEEEEEcCCCceEecc------CCCCCC
Q 005043 175 VWTFD--TETECWSVVEAKGDIPVARSGHTVVRASSVLILFGGEDGKRRKLNDLHMFDLKSLTWLPLH------CTGTGP 246 (717)
Q Consensus 175 v~~yD--~~t~~W~~l~~~g~~P~~R~~hs~~~~~~~Lyv~GG~~~~~~~~~~v~~yD~~t~~W~~l~------~~g~~P 246 (717)
-|.+- .....|+.... +.+|..-.-|+.+.+++.-|++|=.+++ .....+-.+-. ++.|.... ......
T Consensus 260 ~W~~~T~F~~spW~~t~L-~~i~~vTe~HSFa~i~~~~fa~GyHnGD-v~PRe~G~~yf-s~~~~sp~~~vrr~i~sey~ 336 (670)
T 3ju4_A 260 NWHMGTSFHKSPWRKTDL-GLIPSVTEVHSFATIDNNGFAMGYHQGD-VAPREVGLFYF-PDAFNSPSNYVRRQIPSEYE 336 (670)
T ss_dssp EEEEEECSTTSCCEEEEC-CSCTTCSEEEEEEECSSSCEEEEEEECS-SSSCEEEEEEE-TTTTTCTTCCEEEECCGGGC
T ss_pred eeeeeeeeccCCceeccc-ccccceeeeeeeeEecCCceEEEeccCC-CCcceeeEEEe-cccccCCcceeeeechhhhc
Confidence 55543 44667877653 3467777889999999888888766655 23333333222 12232110 001122
Q ss_pred CCCcccEEEEECCcEEEEE-cCCCCCCCCCeEEEEECCCCcEEEeecCCCCCCCCcceEEEEECCEEEEEecCCC-----
Q 005043 247 SPRSNHVAALYDDKNLLIF-GGSSKSKTLNDLYSLDFETMIWTRIKIRGFHPSPRAGCCGVLCGTKWYIAGGGSR----- 320 (717)
Q Consensus 247 ~~R~~~aa~~~~~~~lyV~-GG~~~~~~~ndv~~yd~~t~~W~~v~~~g~~P~~R~~~sav~~~~~IyV~GG~~~----- 320 (717)
..-...+.-.+++. ||+. -|......-..+.+-+.....|..+.... .......-.+.+++.|||||-...
T Consensus 337 ~~AsEPCvkyYdgv-LyLtTRgt~~~~~GS~L~rs~d~Gq~w~slrfp~--nvHhtnlPFakvgD~l~mFgsERA~nEWE 413 (670)
T 3ju4_A 337 PDASEPCIKYYDGV-LYLITRGTRGDRLGSSLHRSRDIGQTWESLRFPH--NVHHTTLPFAKVGDDLIMFGSERAENEWE 413 (670)
T ss_dssp TTEEEEEEEEETTE-EEEEEEESCTTSCCCEEEEESSTTSSCEEEECTT--CCCSSCCCEEEETTEEEEEEECSSTTCSS
T ss_pred cccccchhhhhCCE-EEEEecCcCCCCCcceeeeecccCCchhheeccc--cccccCCCcceeCCEEEEEeccccccccc
Confidence 22233345567777 6654 45544455567888888889999987531 112222334668999999995321
Q ss_pred -----C---CccCeEE--EEEC-----CCCcEEEeec--CCCCCCCCCcceEEEEEEeCCCcEE-EEEcCCCCC------
Q 005043 321 -----K---KRHAETL--IFDI-----LKGEWSVAIT--SPSSSVTSNKGFTLVLVQHKEKDFL-VAFGGIKKE------ 376 (717)
Q Consensus 321 -----~---~~~~dv~--~yD~-----~t~~W~~l~~--~p~~~~~~r~g~s~v~v~~~~~~~I-~v~GG~~~~------ 376 (717)
+ .....++ ..+. +.-+|..+.. ..........|.+.+++. ++.| |+|||.+..
T Consensus 414 ~G~pD~RY~a~yPRtF~~r~nv~~W~~d~~ew~nItdqIYqG~ivNsavGVGSv~vK---D~~lyyiFGgEd~~np~s~g 490 (670)
T 3ju4_A 414 AGAPDDRYKASYPRTFYARLNVNNWNADDIEWVNITDQIYQGGIVNSGVGVGSVVVK---DNYIYYMFGGEDHFNPWTYG 490 (670)
T ss_dssp TTCCCCCSSCBCCEEEEEEEETTTCCCTTCCCEEEEECBBCCSSSCCCSEEEEEEEE---TTEEEEEEEEBCSCCCCTTT
T ss_pred cCCCcccccccCCceEEEEeecccCCccceEEEEeecceeccccccccccceeEEEe---CCEEEEEecCcccCCccccc
Confidence 1 1112233 2233 3346776654 233334455677777775 5565 489996311
Q ss_pred ------------CCCeEEEEEccCCccc
Q 005043 377 ------------PSNQVEVLSIEKNESS 392 (717)
Q Consensus 377 ------------~~n~v~vyd~~~~eW~ 392 (717)
...++++|.+.-....
T Consensus 491 dN~~k~~~~~~Ghp~dlY~~ri~i~~~~ 518 (670)
T 3ju4_A 491 DNSAKDPFKSDGHPSDLYCYKMKIGPDN 518 (670)
T ss_dssp TTTTCCTTSTTCCCCEEEEEEEECSCCC
T ss_pred cccccCccccCCCCcceEEEEEEecCCc
Confidence 1558999998766543
No 325
>1wle_A Seryl-tRNA synthetase; ligase; HET: SRP; 1.65A {Bos taurus}
Probab=67.95 E-value=16 Score=40.49 Aligned_cols=39 Identities=31% Similarity=0.267 Sum_probs=20.2
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhhh-hhhhcccccccccC
Q 005043 613 MEKKLADSLKEMELLKEKLAGLELA-QEEANSLSNIVHSD 651 (717)
Q Consensus 613 ~~~~~~~~~~~~~~l~~~~~~~~~~-~~~~~~~~~~~~~~ 651 (717)
+.+++..+.+++..|++++..+|.. ++....|-|++|.+
T Consensus 121 l~~~~~~l~~~i~~l~~~~~~~~~~l~~~l~~iPN~~~~~ 160 (501)
T 1wle_A 121 LRARGREIRKQLTLLYPKEAQLEEQFYLRALRLPNQTHPD 160 (501)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCCCCCTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCC
Confidence 3333333344444444444433322 25566799999985
No 326
>3ter_A Mammalian stromal interaction molecule-1; dimer, metal binding protein; 2.55A {Caenorhabditis elegans}
Probab=67.85 E-value=19 Score=32.50 Aligned_cols=59 Identities=20% Similarity=0.214 Sum_probs=42.8
Q ss_pred HHHHHHHHHHHHHHHhcchhHHHHHHHhhHHHHHhhhhhHH----------hhHHHHHHHHHHHHHHHH
Q 005043 567 IYQFYESKMAALIRKNGILEGQLAAALVNREAAEKNFSSVL----------KSRQEMEKKLADSLKEME 625 (717)
Q Consensus 567 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~----------~~~~~~~~~~~~~~~~~~ 625 (717)
++.+||.+++....+....|.||..|-..-|-..|+-+|++ .|-.+++.|+-.+..-++
T Consensus 39 Lq~T~E~E~q~~~~kk~~Aekql~~Ake~~eKlkKKrsSv~gs~~~aHs~~sslD~vD~~Il~Ak~aL~ 107 (136)
T 3ter_A 39 LRRTCENEMAFLEKQRQDCFKEMKEAIEMVDRLQKKQGSVLSSLKLATGAASTSDQVDSKIFALKSRME 107 (136)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC------CCCCCCSSCCHHHHHHHHHHHHHHHHH
T ss_pred HHHHhHHHHHHHHHccccHHHHHHHHHHHHHHHHHhhhchheeeeeecCCCCchHHHHHHHHHHHHHHH
Confidence 45699999999999999999999999888888888766664 556667666655444443
No 327
>2zqm_A Prefoldin beta subunit 1; chaperone; HET: CIT; 1.90A {Thermococcus SP} PDB: 2zdi_A
Probab=67.38 E-value=25 Score=30.49 Aligned_cols=34 Identities=12% Similarity=0.239 Sum_probs=23.2
Q ss_pred HHHHHHHHHHHHHHhcchhHHHHHHHhhHHHHHh
Q 005043 568 YQFYESKMAALIRKNGILEGQLAAALVNREAAEK 601 (717)
Q Consensus 568 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~ 601 (717)
++.+..++..+...-..|+.|+..+-.-.++.+.
T Consensus 15 ~~~l~~~~~~l~~q~~~l~~~~~e~~~~~~eL~~ 48 (117)
T 2zqm_A 15 LESYQQQLQLVVQQKQKVQLELTEAKKALDEIES 48 (117)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 3566677777777777777777776665555554
No 328
>3v65_B Low-density lipoprotein receptor-related protein; laminin-G, beta-propeller, protein binding; 3.30A {Rattus norvegicus}
Probab=67.31 E-value=1.3e+02 Score=31.58 Aligned_cols=189 Identities=7% Similarity=-0.030 Sum_probs=102.8
Q ss_pred CCEEEEEcccCCCCCcccEEEEEcCCCceEEccccccCCCCCCCCCCCcccceEEEEECCEEEEEeccCCCCCCceEEEE
Q 005043 98 GNKMIVVGGESGNGLLDDVQVLNFDRFSWTAASSKLYLSPSSLPLKIPACRGHSLISWGKKVLLVGGKTDSGSDRVSVWT 177 (717)
Q Consensus 98 ~~~lyV~GG~~~~~~~~~v~~yd~~t~~W~~l~~~~~~~~~~~~~~~p~r~~hs~v~~~~~Iyv~GG~~~~~~~~~~v~~ 177 (717)
++.||+.--. ...++++++.......+.... +..| .+.++-..++.||+.-.. ...+++
T Consensus 127 ~~~ly~~D~~-----~~~I~r~~~~g~~~~~~~~~~--------~~~p--~glavd~~~g~lY~~d~~------~~~I~~ 185 (386)
T 3v65_B 127 RELVFWSDVT-----LDRILRANLNGSNVEEVVSTG--------LESP--GGLAVDWVHDKLYWTDSG------TSRIEV 185 (386)
T ss_dssp TTEEEEEETT-----TTEEEEEETTSCCEEEEECSS--------CSCC--CCEEEETTTTEEEEEETT------TTEEEE
T ss_pred CCeEEEEeCC-----CCcEEEEecCCCCcEEEEeCC--------CCCc--cEEEEEeCCCeEEEEcCC------CCeEEE
Confidence 5788887432 246899999887665543310 1111 122222237899998443 236888
Q ss_pred EECCCCcEEEeeecCCCCCCceeeEEEEE--CCEEEEEccccCCCCCcCcEEEEEcCCCceEeccCCCCCCCCCcccEEE
Q 005043 178 FDTETECWSVVEAKGDIPVARSGHTVVRA--SSVLILFGGEDGKRRKLNDLHMFDLKSLTWLPLHCTGTGPSPRSNHVAA 255 (717)
Q Consensus 178 yD~~t~~W~~l~~~g~~P~~R~~hs~~~~--~~~Lyv~GG~~~~~~~~~~v~~yD~~t~~W~~l~~~g~~P~~R~~~aa~ 255 (717)
+++....-..+.. ..+..| ..+++. ++.||+.--. ....|+++++....-..+... .+..| ...+
T Consensus 186 ~~~dg~~~~~l~~-~~l~~P---~giavdp~~g~ly~td~~-----~~~~I~r~~~dG~~~~~~~~~-~~~~P---nGla 252 (386)
T 3v65_B 186 ANLDGAHRKVLLW-QSLEKP---RAIALHPMEGTIYWTDWG-----NTPRIEASSMDGSGRRIIADT-HLFWP---NGLT 252 (386)
T ss_dssp CBTTSCSCEEEEC-SSCSCE---EEEEEETTTTEEEEEECS-----SSCEEEEEETTSCSCEEEECS-SCSCE---EEEE
T ss_pred EeCCCCceEEeec-CCCCCC---cEEEEEcCCCeEEEeccC-----CCCEEEEEeCCCCCcEEEEEC-CCCCe---eeEE
Confidence 8887654333321 122222 344444 5788887321 136799999876543333211 11111 1233
Q ss_pred EE-CCcEEEEEcCCCCCCCCCeEEEEECCCCcEEEeecCCCCCCCCcceEEEEECCEEEEEecCCCCCccCeEEEEECCC
Q 005043 256 LY-DDKNLLIFGGSSKSKTLNDLYSLDFETMIWTRIKIRGFHPSPRAGCCGVLCGTKWYIAGGGSRKKRHAETLIFDILK 334 (717)
Q Consensus 256 ~~-~~~~lyV~GG~~~~~~~ndv~~yd~~t~~W~~v~~~g~~P~~R~~~sav~~~~~IyV~GG~~~~~~~~dv~~yD~~t 334 (717)
+- .++.||+.-.. .+.|+++|++...-..+...+ ...-.++++.++.||+..-.. ..|+++|..+
T Consensus 253 vd~~~~~lY~aD~~-----~~~I~~~d~dG~~~~~~~~~~----~~~P~giav~~~~ly~td~~~-----~~V~~~~~~~ 318 (386)
T 3v65_B 253 IDYAGRRMYWVDAK-----HHVIERANLDGSHRKAVISQG----LPHPFAITVFEDSLYWTDWHT-----KSINSANKFT 318 (386)
T ss_dssp EEGGGTEEEEEETT-----TTEEEEECTTSCSCEEEECSS----CSSEEEEEEETTEEEEEETTT-----TEEEEEETTT
T ss_pred EeCCCCEEEEEECC-----CCEEEEEeCCCCeeEEEEECC----CCCceEEEEECCEEEEeeCCC-----CeEEEEECCC
Confidence 32 35558887432 357999998754433333221 112245566789999987432 4588888544
No 329
>1z68_A Fibroblast activation protein, alpha subunit; seprase, fibroblast activation protein alpha,fapalpha, dipeptidylpeptidase,S9B; HET: NAG NDG; 2.60A {Homo sapiens}
Probab=67.24 E-value=68 Score=36.27 Aligned_cols=151 Identities=9% Similarity=-0.061 Sum_probs=68.7
Q ss_pred CcEEEEEcCCCc---eEeccCCCCC-CCCCcccEEEEECCcEEEEEcCCCCCCCCCeEEEEE----CCCCcEEEeec---
Q 005043 224 NDLHMFDLKSLT---WLPLHCTGTG-PSPRSNHVAALYDDKNLLIFGGSSKSKTLNDLYSLD----FETMIWTRIKI--- 292 (717)
Q Consensus 224 ~~v~~yD~~t~~---W~~l~~~g~~-P~~R~~~aa~~~~~~~lyV~GG~~~~~~~ndv~~yd----~~t~~W~~v~~--- 292 (717)
..++++|+.+.. |..+.....+ .........+...++.+++... +.......++.+| +.++.+..+..
T Consensus 224 ~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SpD~~~~~~~~-~~~~~~~~l~~~d~~~~~~~g~~~~~~~~~~ 302 (719)
T 1z68_A 224 VRIFIIDTTYPAYVGPQEVPVPAMIASSDYYFSWLTWVTDERVCLQWL-KRVQNVSVLSICDFREDWQTWDCPKTQEHIE 302 (719)
T ss_dssp EEEEEEESSCHHHHCCEECCCCHHHHTSCEEEEEEEESSSSEEEEEEE-ESSTTEEEEEEEEECSSSSSEECCGGGEEEE
T ss_pred eEEEEEECCCCCccceeEccCCccCCCCcceEEEeEEeCCCeEEEEEe-ccccCeEEEEEEcccCCCCCCceEEEEeccc
Confidence 378889988765 2333210000 0111222333334444544421 1112234699999 77776655431
Q ss_pred CCCCCCCCcc-----eEEEEECC-EEEEEec-CCCCCccCeEEEEECCCCcEEEeecCCCCCCCCCcceEEEEEEeCCCc
Q 005043 293 RGFHPSPRAG-----CCGVLCGT-KWYIAGG-GSRKKRHAETLIFDILKGEWSVAITSPSSSVTSNKGFTLVLVQHKEKD 365 (717)
Q Consensus 293 ~g~~P~~R~~-----~sav~~~~-~IyV~GG-~~~~~~~~dv~~yD~~t~~W~~l~~~p~~~~~~r~g~s~v~v~~~~~~ 365 (717)
.+ ...... .-+..-++ .|++... .++ ...+|.+|+.+.....+.. .......+... +++
T Consensus 303 ~~--~~~~~~~~~~~~~~~spdg~~l~~~~~~~~g---~~~l~~~~~~~~~~~~lt~-------~~~~v~~~~~~--d~~ 368 (719)
T 1z68_A 303 ES--RTGWAGGFFVSTPVFSYDAISYYKIFSDKDG---YKHIHYIKDTVENAIQITS-------GKWEAINIFRV--TQD 368 (719)
T ss_dssp EC--SSSCSSSSSCCCCEECTTSSCEEEEEECTTS---CEEEEEESSCSTTCEECSC-------SSSCEEEEEEE--CSS
T ss_pred cc--CCceEccccCCccEECCCCCeEEEEEEccCC---ceEEEEEECCCCceEeccc-------CceEEEEEEEE--eCC
Confidence 11 111111 11122244 4555333 222 3579999998887665531 11112222222 356
Q ss_pred EEEEEcCC--CCCCCCeEEEEEccCC
Q 005043 366 FLVAFGGI--KKEPSNQVEVLSIEKN 389 (717)
Q Consensus 366 ~I~v~GG~--~~~~~n~v~vyd~~~~ 389 (717)
.||..+.. .......+|..+....
T Consensus 369 ~i~~~~~~~~~~~~~~~l~~~~~~~g 394 (719)
T 1z68_A 369 SLFYSSNEFEEYPGRRNIYRISIGSY 394 (719)
T ss_dssp EEEEEESCGGGCTTCBEEEEEECSSS
T ss_pred EEEEEEecCCCCCceEEEEEEeCCCC
Confidence 66655543 2223346777776443
No 330
>1gen_A Gelatinase A; hydrolase, hemopexin domain, metalloprotease, hydrolase (metalloprotease); 2.15A {Homo sapiens} SCOP: b.66.1.1 PDB: 1rtg_A
Probab=67.20 E-value=95 Score=30.14 Aligned_cols=156 Identities=12% Similarity=0.094 Sum_probs=76.1
Q ss_pred EEEEECCEEEEEccccCCCCCcCcEEEEEcCCCc-eE--eccCC-CCCCCCCcccEEEEECCcEEEEEcCCCCCCCCCeE
Q 005043 202 TVVRASSVLILFGGEDGKRRKLNDLHMFDLKSLT-WL--PLHCT-GTGPSPRSNHVAALYDDKNLLIFGGSSKSKTLNDL 277 (717)
Q Consensus 202 s~~~~~~~Lyv~GG~~~~~~~~~~v~~yD~~t~~-W~--~l~~~-g~~P~~R~~~aa~~~~~~~lyV~GG~~~~~~~ndv 277 (717)
+++..++.+|+|=| +.+|+++..... .. .+... ..+|. ....+.....++.+|+|-| +..
T Consensus 35 Ai~~~~g~~~fFkg--------~~~Wr~~~~~~~~~~P~~I~~~wp~lp~-~IDAA~~~~~~~k~yfFkG-------~~y 98 (218)
T 1gen_A 35 GIAQIRGEIFFFKD--------RFIWRTVTPRDKPMGPLLVATFWPELPE-KIDAVYEAPQEEKAVFFAG-------NEY 98 (218)
T ss_dssp EEEEETTEEEEEET--------TEEEEESSTTSCCEEEEEGGGTCTTSCS-CCSEEEEETTTTEEEEEET-------TEE
T ss_pred EEEeCCCcEEEEEC--------CEEEEEeCCCCccCCCEEHHHhcCCCCC-CccEEEEECCCCEEEEEeC-------CEE
Confidence 45557889999965 235555443211 11 11110 12332 2333322223334888877 368
Q ss_pred EEEECCCC---cEEEeecCCCCCCCCcceEEEEE--CCEEEEEecCCCCCccCeEEEEECCCCcEEE-----eecCCCCC
Q 005043 278 YSLDFETM---IWTRIKIRGFHPSPRAGCCGVLC--GTKWYIAGGGSRKKRHAETLIFDILKGEWSV-----AITSPSSS 347 (717)
Q Consensus 278 ~~yd~~t~---~W~~v~~~g~~P~~R~~~sav~~--~~~IyV~GG~~~~~~~~dv~~yD~~t~~W~~-----l~~~p~~~ 347 (717)
|+|+..+. -=..+...|.+.....-.++..+ ++++|+|-| +..|+||..+.+-.. +...-+..
T Consensus 99 W~y~~~~~~~gyPk~I~~~g~p~~~~~IDAAf~~~~~g~~YfFkG-------~~ywr~d~~~~~v~~gyPr~i~~~w~g~ 171 (218)
T 1gen_A 99 WIYSASTLERGYPKPLTSLGLPPDVQRVDAAFNWSKNKKTYIFAG-------DKFWRYNEVKKKMDPGFPKLIADAWNAI 171 (218)
T ss_dssp EEEETTEECTTCSEEGGGGTCCTTCCCCSEEEEETTTTEEEEEET-------TEEEEEETTTTEECSSCCEEHHHHSSSC
T ss_pred EEEcCccccCCCCccHhhcCCCCCcCCccEEEEEcCCCeEEEEEC-------CEEEEEECccccccCCCCcchhhccCCC
Confidence 99985211 00112222222222223344443 689999988 468999987753211 11000011
Q ss_pred CCCCcceEEEEEEeCCCcEEEEEcCCCCCCCCeEEEEEccCCc
Q 005043 348 VTSNKGFTLVLVQHKEKDFLVAFGGIKKEPSNQVEVLSIEKNE 390 (717)
Q Consensus 348 ~~~r~g~s~v~v~~~~~~~I~v~GG~~~~~~n~v~vyd~~~~e 390 (717)
| .. .- +++...+++.+|.|=|. ..|.||.....
T Consensus 172 p--~~-id-aAf~~~~~g~~YfFkg~------~y~~~~~~~~~ 204 (218)
T 1gen_A 172 P--DN-LD-AVVDLQGGGHSYFFKGA------YYLKLENQSLK 204 (218)
T ss_dssp C--SS-CS-EEEECTTTCEEEEEETT------EEEEEETTEEE
T ss_pred C--CC-CC-EEEEEcCCCcEEEEECC------EEEEEECCcee
Confidence 1 11 11 22333335789988775 67888875443
No 331
>3cvf_A Homer-3, homer protein homolog 3; coiled coil, alternative splicing, cell junction, cytoplasm, membrane, phosphoprotein, polymorphism; 2.90A {Homo sapiens}
Probab=66.38 E-value=30 Score=28.27 Aligned_cols=59 Identities=32% Similarity=0.287 Sum_probs=31.6
Q ss_pred HHHHHHHHHHHHHhcchhHHHHHHHhhHHHHHhhhhhHHhhHHHHHHHHHHHHHHHHHHHHHHhhh
Q 005043 569 QFYESKMAALIRKNGILEGQLAAALVNREAAEKNFSSVLKSRQEMEKKLADSLKEMELLKEKLAGL 634 (717)
Q Consensus 569 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 634 (717)
|.-|.+-+.|-.+-..||++|+.+...++.+...|..++ +.+ .-..-|+-.|+.+||.+
T Consensus 16 q~~E~rN~~Le~~v~~le~~Le~s~~~q~~~~~Elk~l~---e~L----d~KI~eL~elRqgLakL 74 (79)
T 3cvf_A 16 QDLETRNAELEHQLRAMERSLEEARAERERARAEVGRAA---QLL----DVSLFELSELREGLARL 74 (79)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHH----HHHHHHHHHHHHHHHHH
T ss_pred HHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHH----hhHHHHHHHHHHHHHHh
Confidence 333444444444444555555555555555555554443 233 34445667788888764
No 332
>2xe4_A Oligopeptidase B; hydrolase-inhibitor complex, hydrolase, protease inhibitor trypanosomes, CLAN SC; HET: FC0 RGL; 1.65A {Leishmania major}
Probab=66.27 E-value=94 Score=35.91 Aligned_cols=151 Identities=13% Similarity=0.153 Sum_probs=81.6
Q ss_pred cccEEEEEcCCC--ce--EEccccccCCCCCCCCCCCcccceEEE-EECCEEEEEeccCCCCCCceEEEEEECCC-CcEE
Q 005043 113 LDDVQVLNFDRF--SW--TAASSKLYLSPSSLPLKIPACRGHSLI-SWGKKVLLVGGKTDSGSDRVSVWTFDTET-ECWS 186 (717)
Q Consensus 113 ~~~v~~yd~~t~--~W--~~l~~~~~~~~~~~~~~~p~r~~hs~v-~~~~~Iyv~GG~~~~~~~~~~v~~yD~~t-~~W~ 186 (717)
.+++|++|+.+. .+ ..+.+. .. ...+... ..++.||+..-.. ......++.+|+.+ ..|+
T Consensus 294 ~~~l~~~d~~~~~~~~~~~~l~~~----------~~--~~~~s~~~~~g~~l~~~t~~~--~a~~~~L~~~d~~~~~~~~ 359 (751)
T 2xe4_A 294 TAEVHLLDLRKGNAHNTLEIVRPR----------EK--GVRYDVQMHGTSHLVILTNEG--GAVNHKLLIAPRGQPSDWS 359 (751)
T ss_dssp CEEEEEEESSSCTTCCCEEESSCC----------CT--TCCEEEEEETTTEEEEEECTT--TCTTCEEEEEETTSTTCCC
T ss_pred CceEEEEECCCCCCCceeEEeecC----------CC--CceEEEeeeeCCEEEEEeCCC--CCCCcEEEEEcCCCcccce
Confidence 468899998875 46 555431 00 1112222 3378888886543 12234799999886 6787
Q ss_pred E-eeecCCCCCCceeeEEEEECCEEEEEccccCCCCCcCcEEEEEc-------CCCc-eEeccCCCCCCCCCcccEEEE-
Q 005043 187 V-VEAKGDIPVARSGHTVVRASSVLILFGGEDGKRRKLNDLHMFDL-------KSLT-WLPLHCTGTGPSPRSNHVAAL- 256 (717)
Q Consensus 187 ~-l~~~g~~P~~R~~hs~~~~~~~Lyv~GG~~~~~~~~~~v~~yD~-------~t~~-W~~l~~~g~~P~~R~~~aa~~- 256 (717)
. +-+. .....-......++.||+..-.++ ...++++|+ .+.. ...+. +|.. .+....
T Consensus 360 ~~li~~---~~~~~l~~~~~~~~~lv~~~~~~g----~~~l~~~dl~~~~~~~~~g~~~~~l~----l~~~--~~~~~~~ 426 (751)
T 2xe4_A 360 HVLVDH---SEDVFMESIAVRSNYLVVAGRRAG----LTRIWTMMADSQDGVFKAGTGLREVV----MEEP--IFTVHLV 426 (751)
T ss_dssp CEEECC---CSSEEEEEEEECSSEEEEEEEETT----EEEEEEEECCTTTSCCCTTTCCEECC----CCCS--SCEEEEC
T ss_pred eeEECC---CCCcEEEEEEEECCEEEEEEEeCC----EEEEEEEecccccccccCCccceEEC----CCCc--eeEEEec
Confidence 6 4321 111122233445677777754433 367899996 3443 44442 2322 222222
Q ss_pred ------ECCc-EEEEEcCCCCCCCCCeEEEEECCCCcEEEeecC
Q 005043 257 ------YDDK-NLLIFGGSSKSKTLNDLYSLDFETMIWTRIKIR 293 (717)
Q Consensus 257 ------~~~~-~lyV~GG~~~~~~~ndv~~yd~~t~~W~~v~~~ 293 (717)
.++. .+|.+.+. .....++.||+.++..+.+...
T Consensus 427 ~~~~~~~~~~~l~~~~ss~---~~P~~~~~~d~~~~~~~~l~~~ 467 (751)
T 2xe4_A 427 ESQMLEYEEPTFRMEYSSL---ATPNTWFDVSPQDHSRTAVKVR 467 (751)
T ss_dssp GGGCCCTTCSCEEEEEEET---TEEEEEEEECTTTCCEEEEEEC
T ss_pred cCcccCCCCCEEEEEEeCC---CCCCEEEEEECCCCcEEEEecc
Confidence 1333 33343332 2335689999998888877653
No 333
>3cve_A Homer protein homolog 1; coiled coil, alternative splicing, cell junction, cytoplasm, membrane, postsynaptic cell membrane, synapse; 1.75A {Rattus norvegicus}
Probab=66.27 E-value=34 Score=27.43 Aligned_cols=56 Identities=30% Similarity=0.364 Sum_probs=31.1
Q ss_pred HHHHHHHHHHhcchhHHHHHHHhhHH-------HHHhhhhhHHhhHHHHHHHHHHHHHHHHHHHHHHhhh
Q 005043 572 ESKMAALIRKNGILEGQLAAALVNRE-------AAEKNFSSVLKSRQEMEKKLADSLKEMELLKEKLAGL 634 (717)
Q Consensus 572 ~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~e~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 634 (717)
..|++++-.+|-.||+++..+-...| .+...|..++ +. |.-..-|+-.|+.+||.+
T Consensus 6 ~~kLq~~E~~N~~Le~~v~~le~~Le~s~~~q~~~~~Elk~~~---e~----Ld~KI~eL~elrq~LakL 68 (72)
T 3cve_A 6 HMKLQEVEIRNKDLEGQLSEMEQRLEKSQSEQDAFRSNLKTLL---EI----LDGKIFELTELRDNLAKL 68 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HH----HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HH----HhhHHHHHHHHHHHHHHh
Confidence 45677777777777666655544433 3333333222 22 334445667788888764
No 334
>2efr_A General control protein GCN4 and tropomyosin 1 Al; destabilizing cluster, hydrophobic core, contractIle protein; 1.80A {Saccharomyces cerevisiae} PDB: 2efs_A 2d3e_A
Probab=66.12 E-value=9.3 Score=35.51 Aligned_cols=90 Identities=21% Similarity=0.200 Sum_probs=44.5
Q ss_pred hhHHHHHHHhhHHHHHhh-------hhhHHhhHHHHH---H----HHHHHHHHHHHHHHHHhhhhhhhhhhccccccccc
Q 005043 585 LEGQLAAALVNREAAEKN-------FSSVLKSRQEME---K----KLADSLKEMELLKEKLAGLELAQEEANSLSNIVHS 650 (717)
Q Consensus 585 ~~~~~~~~~~~~~~~e~~-------~~~~~~~~~~~~---~----~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 650 (717)
+|+.|+.|-.--+.||.+ |..+..+...|| . |-.....++..|++|+..+|.--|.+---.+....
T Consensus 26 ~E~dLEraEERae~aE~k~~eLEeeL~~v~~nlKsLE~seekasqrEd~yEeqIk~L~~kLKEAE~RAE~AERsv~kLEk 105 (155)
T 2efr_A 26 LKKLLERAEERAELSEGKSAELEEELKTVTNNLKSLEAQAEKYSQKEDKYEEEIKVLSDKLKEAETRAEFAERSVTKLEK 105 (155)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 666666666555555554 222222222222 2 22333444455777777776655665554455555
Q ss_pred CCccchhhHHHHHHHHHHHHHHhh
Q 005043 651 DNVRLEHDVAFLKAVLDDTQKELH 674 (717)
Q Consensus 651 ~~~~~~~~~~~~~~~~~~~~~~~~ 674 (717)
+.-+||.++.-=|.-...++.||+
T Consensus 106 ~id~lEd~L~~~Kek~~~i~~eLd 129 (155)
T 2efr_A 106 SIDDLEDELYAQKLKYKAISEEMK 129 (155)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 555666555443333333333333
No 335
>2v71_A Nuclear distribution protein NUDE-like 1; developmental protein, nuclear protein, neurogenesis, cytosk LIS1 binding, differentiation; 2.24A {Rattus norvegicus}
Probab=66.07 E-value=13 Score=35.69 Aligned_cols=77 Identities=17% Similarity=0.166 Sum_probs=49.1
Q ss_pred chHHHHHHHHHHHHHHHhcchhHHHHHHHhhHHHHHhhhhhH----HhhHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhh
Q 005043 565 SSIYQFYESKMAALIRKNGILEGQLAAALVNREAAEKNFSSV----LKSRQEMEKKLADSLKEMELLKEKLAGLELAQEE 640 (717)
Q Consensus 565 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~----~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 640 (717)
..+..-.|+.+.++=.++-.|..+++......+.+-.++... .+....+++.++...++.+.|+.+|-.+|-+.-+
T Consensus 41 rELE~ELE~eL~~~Ek~~~~L~~~~~~L~~E~e~~k~K~~~~~~e~~~~~~~Lq~el~~l~~~~~~l~~~ireLEq~NDd 120 (189)
T 2v71_A 41 RELEAELEAQLVQAEQRNRDLQADNQRLKYEVEALKEKLEHQYAQSYKQVSVLEDDLSQTRAIKEQLHKYVRELEQANDD 120 (189)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhH
Confidence 344455555666655556666666655555555554444433 3336677778888888888889999888877744
Q ss_pred h
Q 005043 641 A 641 (717)
Q Consensus 641 ~ 641 (717)
.
T Consensus 121 l 121 (189)
T 2v71_A 121 L 121 (189)
T ss_dssp H
T ss_pred H
Confidence 3
No 336
>2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae}
Probab=65.91 E-value=2.1e+02 Score=33.71 Aligned_cols=196 Identities=7% Similarity=0.023 Sum_probs=94.0
Q ss_pred CCEEEEEeccCCCCCCceEEEEEECCCCcEEEeeecCCCCCCceeeEEEEECCEEEEEccccCCCCCcCcEEEEEcCCCc
Q 005043 156 GKKVLLVGGKTDSGSDRVSVWTFDTETECWSVVEAKGDIPVARSGHTVVRASSVLILFGGEDGKRRKLNDLHMFDLKSLT 235 (717)
Q Consensus 156 ~~~Iyv~GG~~~~~~~~~~v~~yD~~t~~W~~l~~~g~~P~~R~~hs~~~~~~~Lyv~GG~~~~~~~~~~v~~yD~~t~~ 235 (717)
++.+++.|+.+ ..+.+||..+..-... .+....-.+++...+.+++.|+.+ +.+.+||+.+.+
T Consensus 28 dg~~lAsgs~D------g~I~lw~~~~~~~~~~-----~~~~~~V~~l~fspg~~L~S~s~D------~~v~lWd~~~~~ 90 (902)
T 2oaj_A 28 TQNLLAIATVT------GEVHIYGQQQVEVVIK-----LEDRSAIKEMRFVKGIYLVVINAK------DTVYVLSLYSQK 90 (902)
T ss_dssp TTTEEEEEETT------SEEEEECSTTCEEEEE-----CSSCCCEEEEEEETTTEEEEEETT------CEEEEEETTTCS
T ss_pred CCCEEEEEeCC------CEEEEEeCCCcEEEEE-----cCCCCCEEEEEEcCCCEEEEEECc------CeEEEEECCCCc
Confidence 46677777754 2577888766543222 111112223334445555555533 458888988765
Q ss_pred eEeccCCCCCCCCCcccEEEEECCcEEEEEcCCCCCCCCCeEEEEECCCCcEEEeecCC-----CCCCC--CcceEEEEE
Q 005043 236 WLPLHCTGTGPSPRSNHVAALYDDKNLLIFGGSSKSKTLNDLYSLDFETMIWTRIKIRG-----FHPSP--RAGCCGVLC 308 (717)
Q Consensus 236 W~~l~~~g~~P~~R~~~aa~~~~~~~lyV~GG~~~~~~~ndv~~yd~~t~~W~~v~~~g-----~~P~~--R~~~sav~~ 308 (717)
-...- ..+ ..-.+++...+...++.|+.++ .|..||+.+..-....... ..+.. -.-.+++..
T Consensus 91 ~~~~~---~~~--~~V~~v~~sp~g~~l~sgs~dg-----~V~lwd~~~~~~~~~~i~~~~~~~~~~~~h~~~V~sl~~s 160 (902)
T 2oaj_A 91 VLTTV---FVP--GKITSIDTDASLDWMLIGLQNG-----SMIVYDIDRDQLSSFKLDNLQKSSFFPAARLSPIVSIQWN 160 (902)
T ss_dssp EEEEE---ECS--SCEEEEECCTTCSEEEEEETTS-----CEEEEETTTTEEEEEEECCHHHHHTCSSSCCCCCCEEEEE
T ss_pred EEEEE---cCC--CCEEEEEECCCCCEEEEEcCCC-----cEEEEECCCCccccceeccccccccccccCCCCeEEEEEc
Confidence 33211 111 1112222333333566666543 4899999887643221100 00111 111233333
Q ss_pred C--CEEEEEecCCCCCccCeEEEEECCCCcEEEeecCC--CCCCC---------C-CcceEEEEEEeCCCcEEEEEcCCC
Q 005043 309 G--TKWYIAGGGSRKKRHAETLIFDILKGEWSVAITSP--SSSVT---------S-NKGFTLVLVQHKEKDFLVAFGGIK 374 (717)
Q Consensus 309 ~--~~IyV~GG~~~~~~~~dv~~yD~~t~~W~~l~~~p--~~~~~---------~-r~g~s~v~v~~~~~~~I~v~GG~~ 374 (717)
. +.++++|+.++ .+ +||+.+..-....... ...+. . ......+.+.. ++.+++.|+.+
T Consensus 161 p~~~~~l~~g~~dg-----~v-lWd~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~h~~~V~~v~fsp--dg~~lasgs~D 232 (902)
T 2oaj_A 161 PRDIGTVLISYEYV-----TL-TYSLVENEIKQSFIYELPPFAPGGDFSEKTNEKRTPKVIQSLYHP--NSLHIITIHED 232 (902)
T ss_dssp TTEEEEEEEECSSC-----EE-EEETTTTEEEEEECCCBCTTCCCSTTCCCTTSCBCCCEEEEEECT--TSSEEEEEETT
T ss_pred cCCCCEEEEEeCCC-----cE-EEECCCCceEEEEecccCCcCCCcccccccccccCCCeEEEEEcC--CCCEEEEEECC
Confidence 2 35666776442 47 9999887644322111 00000 0 01133344432 34566777765
Q ss_pred CCCCCeEEEEEccCCc
Q 005043 375 KEPSNQVEVLSIEKNE 390 (717)
Q Consensus 375 ~~~~n~v~vyd~~~~e 390 (717)
+ .|.+||+.+.+
T Consensus 233 g----~i~lWd~~~g~ 244 (902)
T 2oaj_A 233 N----SLVFWDANSGH 244 (902)
T ss_dssp C----CEEEEETTTCC
T ss_pred C----eEEEEECCCCc
Confidence 4 47888876654
No 337
>3bas_A Myosin heavy chain, striated muscle/general control protein GCN4 chimera; alpha-helical coiled coil, disorder, salt links; 2.30A {Argopecten irradians} SCOP: h.1.26.1 PDB: 1nkn_A 3bat_A
Probab=65.36 E-value=30 Score=28.82 Aligned_cols=43 Identities=12% Similarity=0.205 Sum_probs=18.8
Q ss_pred HHHHHHHHhcchhHHHHHHHhhHHHHHhhhhhHHhhHHHHHHH
Q 005043 574 KMAALIRKNGILEGQLAAALVNREAAEKNFSSVLKSRQEMEKK 616 (717)
Q Consensus 574 ~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~ 616 (717)
.++.+-.....|+.+|+..-+.+.+.|.+...++..+..+...
T Consensus 15 Em~~~eeel~~lke~l~k~e~~rkele~~~~~l~~ek~~L~~q 57 (89)
T 3bas_A 15 EMKEQLKQMDKMKEDLAKTERIKKELEEQNVTLLEQKNDLFGS 57 (89)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444444444444444444444444444333
No 338
>2xu6_A MDV1 coiled coil; protein binding, mitochondrial outer membrane, adapter prote organelle division; 2.70A {Saccharomyces cerevisiae}
Probab=65.05 E-value=10 Score=30.28 Aligned_cols=51 Identities=22% Similarity=0.332 Sum_probs=33.5
Q ss_pred HhhHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhcccccccccCCccchhhHHHHHHHHHHHHH
Q 005043 607 LKSRQEMEKKLADSLKEMELLKEKLAGLELAQEEANSLSNIVHSDNVRLEHDVAFLKAVLDDTQK 671 (717)
Q Consensus 607 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 671 (717)
-....+++.|+++.-.-...+=.+||++| |+| .-||||+.-++.=||+.|.
T Consensus 20 ~sEI~EID~Ki~nL~~mR~ivldRlA~lE--qdE------------~~LE~~l~~i~~rle~~qe 70 (72)
T 2xu6_A 20 MSEIRDIEVEVENLRQKKEKLLGKIANIE--QNQ------------LMLEDNLKQIDDRLDFLEE 70 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHH------------HHHHHHHHHHTC-------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH--hhH------------HHHHHHHHHHHHHHHHHHh
Confidence 45667888888888877778888888888 333 3588888888887887764
No 339
>1ses_A Seryl-tRNA synthetase; ligase; HET: AHX AMP; 2.50A {Thermus thermophilus} SCOP: a.2.7.1 d.104.1.1 PDB: 1ser_A* 1set_A* 1sry_A
Probab=64.82 E-value=15 Score=39.86 Aligned_cols=67 Identities=13% Similarity=0.066 Sum_probs=32.7
Q ss_pred hhHHHHHHHhhHHHHHhhhhhH-HhhHHHHHHHHHHHHHHHHHHHHHHhhhhhhh-hhhcccccccccC
Q 005043 585 LEGQLAAALVNREAAEKNFSSV-LKSRQEMEKKLADSLKEMELLKEKLAGLELAQ-EEANSLSNIVHSD 651 (717)
Q Consensus 585 ~~~~~~~~~~~~~~~e~~~~~~-~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~-~~~~~~~~~~~~~ 651 (717)
+..++.+..+.+-++-|.+... =+..+++.+++..+.+++..|++++..+|..- +....|-|++|.+
T Consensus 40 ~~~~~~~l~~~~n~~sk~i~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ipN~~~~~ 108 (421)
T 1ses_A 40 LKKRLQEVQTERNQVAKRVPKAPPEEKEALIARGKALGEEAKRLEEALREKEARLEALLLQVPLPPWPG 108 (421)
T ss_dssp HHHHHHHHHHHHHHHHHHSSSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCCCCTT
T ss_pred HHHHHHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCC
Confidence 3344444445555555544430 01223333444444444444444444443322 4566799999985
No 340
>3p5b_L Low density lipoprotein receptor variant; B-propellor, convertase, hydrolase-lipid binding P complex; 3.30A {Homo sapiens} PDB: 3p5c_L
Probab=64.73 E-value=1.4e+02 Score=31.35 Aligned_cols=220 Identities=11% Similarity=0.074 Sum_probs=118.2
Q ss_pred ccEEEEEcCCCceEEccccccCCCCCCCCCCCcccceEEEEE--CCEEEEEeccCCCCCCceEEEEEECCCC----cEEE
Q 005043 114 DDVQVLNFDRFSWTAASSKLYLSPSSLPLKIPACRGHSLISW--GKKVLLVGGKTDSGSDRVSVWTFDTETE----CWSV 187 (717)
Q Consensus 114 ~~v~~yd~~t~~W~~l~~~~~~~~~~~~~~~p~r~~hs~v~~--~~~Iyv~GG~~~~~~~~~~v~~yD~~t~----~W~~ 187 (717)
+++.++|+....+..+.+. .....+++.. ++.||+.--. ...++++++... ....
T Consensus 92 ~~I~~i~l~~~~~~~~~~~-------------~~~~~~l~~d~~~~~lywsD~~------~~~I~~~~~~g~~~~~~~~~ 152 (400)
T 3p5b_L 92 HEVRKMTLDRSEYTSLIPN-------------LRNVVALDTEVASNRIYWSDLS------QRMICSTQLDRAHGVSSYDT 152 (400)
T ss_dssp TEEEEECTTSCSCEEEECS-------------CSCEEEEEEETTTTEEEEEETT------TTEEEEEEC------CCCEE
T ss_pred ceeEEEccCCcceeEeccc-------------cCcceEEeeeeccCceEEEecC------CCeEEEEEcccCCCCCcceE
Confidence 3678888888777666431 1122344444 6899998432 236889988752 2222
Q ss_pred eeecCCCCCCceeeEEEE--ECCEEEEEccccCCCCCcCcEEEEEcCCCceEeccCCCCCCCCCcccEEEEE-CCcEEEE
Q 005043 188 VEAKGDIPVARSGHTVVR--ASSVLILFGGEDGKRRKLNDLHMFDLKSLTWLPLHCTGTGPSPRSNHVAALY-DDKNLLI 264 (717)
Q Consensus 188 l~~~g~~P~~R~~hs~~~--~~~~Lyv~GG~~~~~~~~~~v~~yD~~t~~W~~l~~~g~~P~~R~~~aa~~~-~~~~lyV 264 (717)
+... .+ ..-.++++ .++.||+.-. ..+.|+++|+....-..+.. ..+..|+ ..++. .++.||+
T Consensus 153 ~~~~-~~---~~p~glavD~~~~~lY~~d~------~~~~I~~~~~~g~~~~~l~~-~~~~~P~---~iavdp~~g~ly~ 218 (400)
T 3p5b_L 153 VISR-DI---QAPDGLAVDWIHSNIYWTDS------VLGTVSVADTKGVKRKTLFR-ENGSKPR---AIVVDPVHGFMYW 218 (400)
T ss_dssp EECS-SC---SCEEEEEEETTTTEEEEEET------TTTEEEEECTTTCSEEEEEE-CSSCCEE---EEEEETTTTEEEE
T ss_pred EEeC-CC---CCcccEEEEecCCceEEEEC------CCCeEEEEeCCCCceEEEEe-CCCCCcc---eEEEecccCeEEE
Confidence 2210 11 12234444 3689999842 23578999998765544421 1222232 33333 2445777
Q ss_pred EcCCCCCCCCCeEEEEECCCCcEEEeecCCCCCCCCcceEEEEE--CCEEEEEecCCCCCccCeEEEEECCCCcEEEeec
Q 005043 265 FGGSSKSKTLNDLYSLDFETMIWTRIKIRGFHPSPRAGCCGVLC--GTKWYIAGGGSRKKRHAETLIFDILKGEWSVAIT 342 (717)
Q Consensus 265 ~GG~~~~~~~ndv~~yd~~t~~W~~v~~~g~~P~~R~~~sav~~--~~~IyV~GG~~~~~~~~dv~~yD~~t~~W~~l~~ 342 (717)
.--. ....|++++++...-+.+...+ -..-.++++. +++||+.-.. ...|+++|++...-+.+..
T Consensus 219 td~~----~~~~I~~~~~dG~~~~~~~~~~----l~~P~glavd~~~~~lY~aD~~-----~~~I~~~d~dG~~~~~~~~ 285 (400)
T 3p5b_L 219 TDWG----TPAKIKKGGLNGVDIYSLVTEN----IQWPNGITLDLLSGRLYWVDSK-----LHSISSIDVNGGNRKTILE 285 (400)
T ss_dssp EECS----SSCCEEEEETTSCSCEEEECSS----CSCEEEEEEETTTTEEEEEETT-----TTEEEEEETTSCCCEEEEE
T ss_pred EeCC----CCCEEEEEeCCCCccEEEEECC----CCceEEEEEEeCCCEEEEEECC-----CCEEEEEeCCCCccEEEEe
Confidence 6421 1246999998765444332211 1112234443 6899998643 2569999997654444432
Q ss_pred CCCCCCCCCcceEEEEEEeCCCcEEEEEcCCCCCCCCeEEEEEccCCc
Q 005043 343 SPSSSVTSNKGFTLVLVQHKEKDFLVAFGGIKKEPSNQVEVLSIEKNE 390 (717)
Q Consensus 343 ~p~~~~~~r~g~s~v~v~~~~~~~I~v~GG~~~~~~n~v~vyd~~~~e 390 (717)
.+.. ....+++++. ++.||+.--. .+.|+.+|..+.+
T Consensus 286 ~~~~---l~~P~gl~v~----~~~lywtd~~----~~~V~~~~~~~G~ 322 (400)
T 3p5b_L 286 DEKR---LAHPFSLAVF----EDKVFWTDII----NEAIFSANRLTGS 322 (400)
T ss_dssp CSST---TSSEEEEEEE----TTEEEEEESS----SCSEEEEESSSCC
T ss_pred CCCC---CCCCEEEEEe----CCEEEEecCC----CCeEEEEEcCCCC
Confidence 2111 2233455554 6778876522 2368888876654
No 341
>1wt6_A Myotonin-protein kinase; coiled-coil, kinase activation, DMPK, molecular replacement, transferase; 1.60A {Homo sapiens}
Probab=64.62 E-value=24 Score=28.82 Aligned_cols=52 Identities=13% Similarity=0.165 Sum_probs=33.8
Q ss_pred HHHHHHHhcchhHHHHHHHhhHHHHHhhhhhHHhhHHHHHHHHHHHHHHHHHHHHHHhh
Q 005043 575 MAALIRKNGILEGQLAAALVNREAAEKNFSSVLKSRQEMEKKLADSLKEMELLKEKLAG 633 (717)
Q Consensus 575 ~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 633 (717)
+...|+-...+..+|..+-+.--++|++|. +.|++-.+++.|++.||+++..
T Consensus 19 LeaEIqAKQ~i~EELs~vr~~ni~~eskL~-------eae~rn~eL~~e~~~l~~~~ee 70 (81)
T 1wt6_A 19 LEEEVLTRQSLSREMEAIRTDNQNFASQLR-------EAEARNRDLEAHVRQLQERMEL 70 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHH
Confidence 344555666667777777777777776665 5566666666677777776655
No 342
>1ijq_A LDL receptor, low-density lipoprotein receptor; beta-propeller, lipid transport; 1.50A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1
Probab=64.60 E-value=1.2e+02 Score=30.52 Aligned_cols=220 Identities=11% Similarity=0.064 Sum_probs=118.2
Q ss_pred ccEEEEEcCCCceEEccccccCCCCCCCCCCCcccceEEEEE--CCEEEEEeccCCCCCCceEEEEEECCC----CcEEE
Q 005043 114 DDVQVLNFDRFSWTAASSKLYLSPSSLPLKIPACRGHSLISW--GKKVLLVGGKTDSGSDRVSVWTFDTET----ECWSV 187 (717)
Q Consensus 114 ~~v~~yd~~t~~W~~l~~~~~~~~~~~~~~~p~r~~hs~v~~--~~~Iyv~GG~~~~~~~~~~v~~yD~~t----~~W~~ 187 (717)
+.+.++|+.+.....+.+. ...-++++.. ++.||+.... ...++++|+.+ .....
T Consensus 10 ~~I~~i~~~~~~~~~~~~~-------------~~~p~g~~~d~~~~~ly~~D~~------~~~I~~~~~~g~~~~~~~~~ 70 (316)
T 1ijq_A 10 HEVRKMTLDRSEYTSLIPN-------------LRNVVALDTEVASNRIYWSDLS------QRMICSTQLDRAHGVSSYDT 70 (316)
T ss_dssp SSEEEEETTSCCCEEEECS-------------CSSEEEEEEETTTTEEEEEETT------TTEEEEEEC--------CEE
T ss_pred CeEEEEECCCcceEehhcC-------------CCceEEEEEEeCCCEEEEEECC------CCcEEEEECCCCCCCcccEE
Confidence 3588899988776655331 1123455554 5789998543 23699999876 22222
Q ss_pred eeecCCCCCCceeeEEEE--ECCEEEEEccccCCCCCcCcEEEEEcCCCceEeccCCCCCCCCCcccEEEEE-CCcEEEE
Q 005043 188 VEAKGDIPVARSGHTVVR--ASSVLILFGGEDGKRRKLNDLHMFDLKSLTWLPLHCTGTGPSPRSNHVAALY-DDKNLLI 264 (717)
Q Consensus 188 l~~~g~~P~~R~~hs~~~--~~~~Lyv~GG~~~~~~~~~~v~~yD~~t~~W~~l~~~g~~P~~R~~~aa~~~-~~~~lyV 264 (717)
+-. ..+..+ ..+++ .++.||+.-. ..+.++++|+....-..+.. ..+..|+ ..++. .++.||+
T Consensus 71 ~~~-~~~~~p---~glavd~~~~~ly~~d~------~~~~I~~~~~~g~~~~~~~~-~~~~~P~---~iavdp~~g~ly~ 136 (316)
T 1ijq_A 71 VIS-RDIQAP---DGLAVDWIHSNIYWTDS------VLGTVSVADTKGVKRKTLFR-ENGSKPR---AIVVDPVHGFMYW 136 (316)
T ss_dssp EEC-SSCSCC---CEEEEETTTTEEEEEET------TTTEEEEEETTSSSEEEEEE-CTTCCEE---EEEEETTTTEEEE
T ss_pred EEe-CCCCCc---CEEEEeecCCeEEEEEC------CCCEEEEEeCCCCceEEEEE-CCCCCcc---eEEeCCCCCEEEE
Confidence 211 112222 34444 3689999732 23578999987654333321 1222222 33343 3555887
Q ss_pred EcCCCCCCCCCeEEEEECCCCcEEEeecCCCCCCCCcceEEEEE--CCEEEEEecCCCCCccCeEEEEECCCCcEEEeec
Q 005043 265 FGGSSKSKTLNDLYSLDFETMIWTRIKIRGFHPSPRAGCCGVLC--GTKWYIAGGGSRKKRHAETLIFDILKGEWSVAIT 342 (717)
Q Consensus 265 ~GG~~~~~~~ndv~~yd~~t~~W~~v~~~g~~P~~R~~~sav~~--~~~IyV~GG~~~~~~~~dv~~yD~~t~~W~~l~~ 342 (717)
..-.. ...|++++++...-+.+... . -..-.++++. +++||+.-... ..|+++|++...-+.+..
T Consensus 137 ~d~~~----~~~I~~~~~dG~~~~~~~~~---~-~~~P~gla~d~~~~~lY~~D~~~-----~~I~~~d~dg~~~~~~~~ 203 (316)
T 1ijq_A 137 TDWGT----PAKIKKGGLNGVDIYSLVTE---N-IQWPNGITLDLLSGRLYWVDSKL-----HSISSIDVNGGNRKTILE 203 (316)
T ss_dssp EECSS----SCEEEEEETTSCCEEEEECS---S-CSCEEEEEEETTTTEEEEEETTT-----TEEEEEETTSCSCEEEEE
T ss_pred EccCC----CCeEEEEcCCCCCeEEEEEC---C-CCCceEEEEeccCCEEEEEECCC-----CeEEEEecCCCceEEEee
Confidence 65221 25799999876554444321 1 1122344443 68999987543 469999997654444432
Q ss_pred CCCCCCCCCcceEEEEEEeCCCcEEEEEcCCCCCCCCeEEEEEccCCc
Q 005043 343 SPSSSVTSNKGFTLVLVQHKEKDFLVAFGGIKKEPSNQVEVLSIEKNE 390 (717)
Q Consensus 343 ~p~~~~~~r~g~s~v~v~~~~~~~I~v~GG~~~~~~n~v~vyd~~~~e 390 (717)
.... ...-+++++. ++.||+.-.. .+.|.++++.+.+
T Consensus 204 ~~~~---~~~P~giav~----~~~ly~~d~~----~~~V~~~~~~~g~ 240 (316)
T 1ijq_A 204 DEKR---LAHPFSLAVF----EDKVFWTDII----NEAIFSANRLTGS 240 (316)
T ss_dssp CTTT---TSSEEEEEEE----TTEEEEEETT----TTEEEEEETTTCC
T ss_pred cCCc---cCCcEEEEEE----CCEEEEEECC----CCeEEEEeCCCCc
Confidence 1111 1222444443 5678876532 3478999986655
No 343
>3vu4_A KMHSV2; beta-propeller fold, protein transport; 2.60A {Kluyveromyces marxianus} PDB: 4av9_A 4av8_A 4exv_A
Probab=64.50 E-value=1.3e+02 Score=30.66 Aligned_cols=185 Identities=10% Similarity=0.019 Sum_probs=88.5
Q ss_pred CCEEEEEeccCCCCCCceEEEEEECCCCcEEEeeecCCCCCCceeeEEEEECCEEEEEccccCCCCCcCcEEEEEcCCCc
Q 005043 156 GKKVLLVGGKTDSGSDRVSVWTFDTETECWSVVEAKGDIPVARSGHTVVRASSVLILFGGEDGKRRKLNDLHMFDLKSLT 235 (717)
Q Consensus 156 ~~~Iyv~GG~~~~~~~~~~v~~yD~~t~~W~~l~~~g~~P~~R~~hs~~~~~~~Lyv~GG~~~~~~~~~~v~~yD~~t~~ 235 (717)
++.+.+.||.. ..+.+||..+++-...-. .+.+ -.++....+.+++.. -+.+.+||+.+.
T Consensus 70 ~~~~~~~~~~d------~~v~iWd~~~~~~~~~~~---~~~~--v~~v~~~~~~~~~~~--------~~~i~i~d~~~~- 129 (355)
T 3vu4_A 70 TNYVAFVTGVK------EVVHIWDDVKKQDVSRIK---VDAP--VKDLFLSREFIVVSY--------GDVISVFKFGNP- 129 (355)
T ss_dssp SSEEEEECSST------TEEEEEETTTTEEEEEEE---CSSC--EEEEEECSSEEEEEE--------TTEEEEEESSTT-
T ss_pred CCEEEEEECCc------cEEEEEECCCCcEEEEEE---CCCc--eEEEEEcCCEEEEEE--------cCEEEEEECCCC-
Confidence 35565666643 268899998876443221 2221 123333345555442 145889998765
Q ss_pred eEeccCCCCCCCCCcccEEEEECCcEEEEE--cCCCCCCCCCeEEEEECCCCc-EEE-------------eecCCCCCCC
Q 005043 236 WLPLHCTGTGPSPRSNHVAALYDDKNLLIF--GGSSKSKTLNDLYSLDFETMI-WTR-------------IKIRGFHPSP 299 (717)
Q Consensus 236 W~~l~~~g~~P~~R~~~aa~~~~~~~lyV~--GG~~~~~~~ndv~~yd~~t~~-W~~-------------v~~~g~~P~~ 299 (717)
...+. .+..+ ...++... . ++++ |+.+ ..+..||+.+.. +.. +... ...
T Consensus 130 ~~~~~---~~~~~--~~~~~~s~-~-~la~~sg~~~-----g~v~iwd~~~~~~~~~~~~~~~~~~~~p~~~~~---~~h 194 (355)
T 3vu4_A 130 WKRIT---DDIRF--GGVCEFSN-G-LLVYSNEFNL-----GQIHITKLQSSGSATTQDQGVQQKAILGKGVLI---KAH 194 (355)
T ss_dssp CCBSS---CCEEE--EEEEEEET-T-EEEEEESSCT-----TCEEEEECCC------------------CCEEE---CCC
T ss_pred ceeeE---EeccC--CceEEEEc-c-EEEEeCCCcC-----cEEEEEECCCCCccccccccccccccCcccEEE---Ecc
Confidence 11121 11111 11222222 5 4444 4433 348999987643 110 1110 111
Q ss_pred CcceEEEEE--CCEEEEEecCCCCCccCe-EEEEECCCCcEEEeecCCCCCCCCCcceEEEEEEeCCCcEEEEEcCCCCC
Q 005043 300 RAGCCGVLC--GTKWYIAGGGSRKKRHAE-TLIFDILKGEWSVAITSPSSSVTSNKGFTLVLVQHKEKDFLVAFGGIKKE 376 (717)
Q Consensus 300 R~~~sav~~--~~~IyV~GG~~~~~~~~d-v~~yD~~t~~W~~l~~~p~~~~~~r~g~s~v~v~~~~~~~I~v~GG~~~~ 376 (717)
.....++.+ ++++++.|+.++ . +.+||+.+.+-...-. ... .......+.+. .++.+++.|+.+
T Consensus 195 ~~~v~~~~~s~~g~~l~s~s~d~-----~~v~iwd~~~~~~~~~~~-~g~---h~~~v~~~~~s--~~~~~l~s~s~d-- 261 (355)
T 3vu4_A 195 TNPIKMVRLNRKSDMVATCSQDG-----TIIRVFKTEDGVLVREFR-RGL---DRADVVDMKWS--TDGSKLAVVSDK-- 261 (355)
T ss_dssp SSCEEEEEECTTSSEEEEEETTC-----SEEEEEETTTCCEEEEEE-CTT---CCSCEEEEEEC--TTSCEEEEEETT--
T ss_pred CCceEEEEECCCCCEEEEEeCCC-----CEEEEEECCCCcEEEEEE-cCC---CCCcEEEEEEC--CCCCEEEEEECC--
Confidence 112222333 677888887653 4 8899998765433221 000 11122333343 245566777754
Q ss_pred CCCeEEEEEccCCc
Q 005043 377 PSNQVEVLSIEKNE 390 (717)
Q Consensus 377 ~~n~v~vyd~~~~e 390 (717)
..+.+||+....
T Consensus 262 --~~v~iw~~~~~~ 273 (355)
T 3vu4_A 262 --WTLHVFEIFNDQ 273 (355)
T ss_dssp --CEEEEEESSCCS
T ss_pred --CEEEEEEccCCC
Confidence 368899987653
No 344
>1ijq_A LDL receptor, low-density lipoprotein receptor; beta-propeller, lipid transport; 1.50A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1
Probab=64.17 E-value=1.3e+02 Score=30.46 Aligned_cols=197 Identities=11% Similarity=-0.021 Sum_probs=104.7
Q ss_pred eeEEEEE--CCEEEEEcccCCCCCcccEEEEEcCC----CceEEccccccCCCCCCCCCCCcccceEEEE--ECCEEEEE
Q 005043 91 NHAAAVI--GNKMIVVGGESGNGLLDDVQVLNFDR----FSWTAASSKLYLSPSSLPLKIPACRGHSLIS--WGKKVLLV 162 (717)
Q Consensus 91 ~haav~~--~~~lyV~GG~~~~~~~~~v~~yd~~t----~~W~~l~~~~~~~~~~~~~~~p~r~~hs~v~--~~~~Iyv~ 162 (717)
-++.++. ++.||+.... ...++++++.+ .....+.... +.. -.++++ .++.||+.
T Consensus 32 p~g~~~d~~~~~ly~~D~~-----~~~I~~~~~~g~~~~~~~~~~~~~~--------~~~----p~glavd~~~~~ly~~ 94 (316)
T 1ijq_A 32 VVALDTEVASNRIYWSDLS-----QRMICSTQLDRAHGVSSYDTVISRD--------IQA----PDGLAVDWIHSNIYWT 94 (316)
T ss_dssp EEEEEEETTTTEEEEEETT-----TTEEEEEEC--------CEEEECSS--------CSC----CCEEEEETTTTEEEEE
T ss_pred eEEEEEEeCCCEEEEEECC-----CCcEEEEECCCCCCCcccEEEEeCC--------CCC----cCEEEEeecCCeEEEE
Confidence 3455554 5789998643 24689999876 2222221100 111 134444 37899998
Q ss_pred eccCCCCCCceEEEEEECCCCcEEEeeecCCCCCCceeeEEEEE--CCEEEEEccccCCCCCcCcEEEEEcCCCceEecc
Q 005043 163 GGKTDSGSDRVSVWTFDTETECWSVVEAKGDIPVARSGHTVVRA--SSVLILFGGEDGKRRKLNDLHMFDLKSLTWLPLH 240 (717)
Q Consensus 163 GG~~~~~~~~~~v~~yD~~t~~W~~l~~~g~~P~~R~~hs~~~~--~~~Lyv~GG~~~~~~~~~~v~~yD~~t~~W~~l~ 240 (717)
-.. ...++++|+....-..+.. ..+..| ..+++. ++.||+..-. ....++++++....-..+.
T Consensus 95 d~~------~~~I~~~~~~g~~~~~~~~-~~~~~P---~~iavdp~~g~ly~~d~~-----~~~~I~~~~~dG~~~~~~~ 159 (316)
T 1ijq_A 95 DSV------LGTVSVADTKGVKRKTLFR-ENGSKP---RAIVVDPVHGFMYWTDWG-----TPAKIKKGGLNGVDIYSLV 159 (316)
T ss_dssp ETT------TTEEEEEETTSSSEEEEEE-CTTCCE---EEEEEETTTTEEEEEECS-----SSCEEEEEETTSCCEEEEE
T ss_pred ECC------CCEEEEEeCCCCceEEEEE-CCCCCc---ceEEeCCCCCEEEEEccC-----CCCeEEEEcCCCCCeEEEE
Confidence 432 2368999988654443322 122222 344443 6789987421 1257999998654433332
Q ss_pred CCCCCCCCCcccEEEEE-CCcEEEEEcCCCCCCCCCeEEEEECCCCcEEEeecCCCCCCCCcceEEEEECCEEEEEecCC
Q 005043 241 CTGTGPSPRSNHVAALY-DDKNLLIFGGSSKSKTLNDLYSLDFETMIWTRIKIRGFHPSPRAGCCGVLCGTKWYIAGGGS 319 (717)
Q Consensus 241 ~~g~~P~~R~~~aa~~~-~~~~lyV~GG~~~~~~~ndv~~yd~~t~~W~~v~~~g~~P~~R~~~sav~~~~~IyV~GG~~ 319 (717)
. ..+.. -..+++- .++.||+.-.. .+.|+++|++...-+.+...+ .....-.++++.++.+|+.-...
T Consensus 160 ~-~~~~~---P~gla~d~~~~~lY~~D~~-----~~~I~~~d~dg~~~~~~~~~~--~~~~~P~giav~~~~ly~~d~~~ 228 (316)
T 1ijq_A 160 T-ENIQW---PNGITLDLLSGRLYWVDSK-----LHSISSIDVNGGNRKTILEDE--KRLAHPFSLAVFEDKVFWTDIIN 228 (316)
T ss_dssp C-SSCSC---EEEEEEETTTTEEEEEETT-----TTEEEEEETTSCSCEEEEECT--TTTSSEEEEEEETTEEEEEETTT
T ss_pred E-CCCCC---ceEEEEeccCCEEEEEECC-----CCeEEEEecCCCceEEEeecC--CccCCcEEEEEECCEEEEEECCC
Confidence 1 11111 1133333 35568887543 357999999764444443211 11122346666789999987432
Q ss_pred CCCccCeEEEEECCCC
Q 005043 320 RKKRHAETLIFDILKG 335 (717)
Q Consensus 320 ~~~~~~dv~~yD~~t~ 335 (717)
..|.++|+.+.
T Consensus 229 -----~~V~~~~~~~g 239 (316)
T 1ijq_A 229 -----EAIFSANRLTG 239 (316)
T ss_dssp -----TEEEEEETTTC
T ss_pred -----CeEEEEeCCCC
Confidence 46888887554
No 345
>1hxn_A Hemopexin, HPX; heme, binding protein; 1.80A {Oryctolagus cuniculus} SCOP: b.66.1.1
Probab=64.16 E-value=43 Score=32.78 Aligned_cols=142 Identities=18% Similarity=0.310 Sum_probs=73.6
Q ss_pred ECCEEEEEeccCCCCCCceEEEEEECCCCcEE--Eeeec-CCCCCCceeeEEEEECCEEEEEccccCCCCCcCcEEEEEc
Q 005043 155 WGKKVLLVGGKTDSGSDRVSVWTFDTETECWS--VVEAK-GDIPVARSGHTVVRASSVLILFGGEDGKRRKLNDLHMFDL 231 (717)
Q Consensus 155 ~~~~Iyv~GG~~~~~~~~~~v~~yD~~t~~W~--~l~~~-g~~P~~R~~hs~~~~~~~Lyv~GG~~~~~~~~~~v~~yD~ 231 (717)
.++.+|+|=|. .+|+++.....+. .+... ..+|.. .. ++...++++|+|-| +.+|+|+.
T Consensus 27 ~~g~~yfFkg~--------~~Wr~~~~~~~~~p~~Is~~wpgLP~~-ID-AA~~~~~~~yfFkG--------~~yw~~~~ 88 (219)
T 1hxn_A 27 NHGATYVFSGS--------HYWRLDTNRDGWHSWPIAHQWPQGPST-VD-AAFSWEDKLYLIQD--------TKVYVFLT 88 (219)
T ss_dssp TTSCEEEEETT--------EEEESSSSSCTTCCEEGGGTCTTSCSS-CS-EEEEETTEEEEEET--------TEEEEEEC
T ss_pred CCCcEEEEeCC--------EEEEEcCCCCCCCceEhhhhccCCCCC-cc-EEEEECCcEEEecC--------CEEEEEeC
Confidence 47889999774 4788875433221 11110 134432 22 33345899999955 45888886
Q ss_pred CCC-ce-----EeccC-CCCCCCC----CcccEEEEECCcEEEEEcCCCCCCCCCeEEEEECCC---CcEEEeecCCCCC
Q 005043 232 KSL-TW-----LPLHC-TGTGPSP----RSNHVAALYDDKNLLIFGGSSKSKTLNDLYSLDFET---MIWTRIKIRGFHP 297 (717)
Q Consensus 232 ~t~-~W-----~~l~~-~g~~P~~----R~~~aa~~~~~~~lyV~GG~~~~~~~ndv~~yd~~t---~~W~~v~~~g~~P 297 (717)
.++ +- ..+.. . .+|.. +...+....+++.+|+|-| +..|+||..+ ..|...+. +
T Consensus 89 ~~~~~~~~gyPk~i~~~~-G~p~~~~~~~IDAA~~~~~~gk~yfFkG-------~~ywr~d~~~~P~~i~~~~~g----~ 156 (219)
T 1hxn_A 89 KGGYTLVNGYPKRLEKEL-GSPPVISLEAVDAAFVCPGSSRLHIMAG-------RRLWWLDLKSGAQATWTELPW----P 156 (219)
T ss_dssp SSSCEECTTCCEEHHHHH-CCCSSCCCSCCCEEECCTTCCEEEEEET-------TEEEEEEGGGGGGCCCEEECC----S
T ss_pred CCCceecCCCCeehhhcc-CCCCcccccccceeEEecCCCEEEEEeC-------CEEEEEeCCCCceEhhhcCCC----C
Confidence 431 10 01110 1 13322 2232222223345898887 3589999754 23433221 1
Q ss_pred CCCcceEEEE------------ECCEEEEEecCCCCCccCeEEEEECCC
Q 005043 298 SPRAGCCGVL------------CGTKWYIAGGGSRKKRHAETLIFDILK 334 (717)
Q Consensus 298 ~~R~~~sav~------------~~~~IyV~GG~~~~~~~~dv~~yD~~t 334 (717)
..... ++.. .++.+|+|-| +.-|.||..+
T Consensus 157 p~~vd-Aa~~~~~~~~~~~~~~~~~~~YFFkg-------~~y~r~~~~~ 197 (219)
T 1hxn_A 157 HEKVD-GALCMEKPLGPNSCSTSGPNLYLIHG-------PNLYCYRHVD 197 (219)
T ss_dssp CSCCS-EEEEESSCSSSCCSCSSSCEEEEEET-------TEEEEESSHH
T ss_pred CCCcC-EEEEccccccccceeccCCeEEEEEC-------CEEEEEeCCc
Confidence 12222 3333 3468999988 4577887644
No 346
>2p22_A Suppressor protein STP22 of temperature- sensitive alpha-factor receptor and arginine...; endosome, trafficking complex, VPS23, VPS28, VPS37, MVB12; 2.70A {Saccharomyces cerevisiae} PDB: 2caz_A
Probab=64.05 E-value=63 Score=30.45 Aligned_cols=68 Identities=10% Similarity=0.141 Sum_probs=55.3
Q ss_pred HHHHHHHHHHHHHHHhcchhHHHHHHH-hhHHHHHhhhhhHHhhHHHHHHHHHHHHHHHHHHHHHHhhh
Q 005043 567 IYQFYESKMAALIRKNGILEGQLAAAL-VNREAAEKNFSSVLKSRQEMEKKLADSLKEMELLKEKLAGL 634 (717)
Q Consensus 567 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 634 (717)
|..+|+...+-...+-.....+|..+| +-+++.++-...+-..++.+|+.++...++++.|+++.+.+
T Consensus 21 i~~l~~~~~~~~~e~l~~~q~~lq~sl~~~~~~l~~g~~~L~~~~~~Le~~~~~L~~~i~~l~~~~~k~ 89 (174)
T 2p22_A 21 VNELYREDVDYVADKILTRQTVMQESIARFHEIIAIDKNHLRAVEQAIEQTMHSLNAQIDVLTANRAKV 89 (174)
T ss_dssp HHHHHHHHHHHHHHHTGGGGTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345777777777778788888998887 56677788888899999999999999999999999955533
No 347
>2fxo_A Myosin heavy chain, cardiac muscle beta isoform; coiled coil (dimeric, parallel), familial hypertrophic cardiomyopathy, FHC-associated mutant E924K; 2.50A {Homo sapiens} SCOP: h.1.26.1 PDB: 2fxm_A
Probab=63.73 E-value=22 Score=31.78 Aligned_cols=60 Identities=15% Similarity=0.192 Sum_probs=45.5
Q ss_pred HHHHHHHHHHHHHHhcchhHHHHHHHhhHHHHHhhhhhHHhhHHHHHHHHHHHHHHHHHH
Q 005043 568 YQFYESKMAALIRKNGILEGQLAAALVNREAAEKNFSSVLKSRQEMEKKLADSLKEMELL 627 (717)
Q Consensus 568 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~l 627 (717)
....+.....|+.+...||++|..+....|..|...+.+...+..|+..+.+.-++++.+
T Consensus 64 l~e~EE~~~~L~~~k~eLe~~l~el~~rleeeee~~~~L~~~kkkle~e~~~Lk~~led~ 123 (129)
T 2fxo_A 64 LADAEERCDQLIKNKIQLEAKVKEMNKRLEDEEEMNAELTAKKRKLEDECSELKRDIDDL 123 (129)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345566777788888888888888888888888888888877777777666665555554
No 348
>1fxk_A Prefoldin; archaeal protein, chaperone; 2.30A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: a.2.5.1 PDB: 1fxk_B
Probab=63.57 E-value=34 Score=29.05 Aligned_cols=34 Identities=15% Similarity=0.169 Sum_probs=21.8
Q ss_pred HHHHHHHHHHHHHHhcchhHHHHHHHhhHHHHHh
Q 005043 568 YQFYESKMAALIRKNGILEGQLAAALVNREAAEK 601 (717)
Q Consensus 568 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~ 601 (717)
++.+..++..+...-..++.|+..+---.++.+.
T Consensus 10 f~~lq~~~~~l~~q~~~l~~~~~e~~~~~~EL~~ 43 (107)
T 1fxk_A 10 FQQLQQQAQAISVQKQTVEMQINETQKALEELSR 43 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 3556667777777777777777666555555544
No 349
>1d7m_A Cortexillin I; coiled-coil, coiled-coil trigger site, alpha helix, dimeriza contractIle protein; 2.70A {Dictyostelium discoideum} SCOP: h.1.10.1
Probab=62.30 E-value=66 Score=26.60 Aligned_cols=76 Identities=36% Similarity=0.458 Sum_probs=40.0
Q ss_pred HHHHHHhcchhHHHHHHHhhHHHHHhhhhhHHhhHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhcccccccccCCccc
Q 005043 576 AALIRKNGILEGQLAAALVNREAAEKNFSSVLKSRQEMEKKLADSLKEMELLKEKLAGLELAQEEANSLSNIVHSDNVRL 655 (717)
Q Consensus 576 ~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 655 (717)
..|++....||.-|+..-..-++-+|.+. +++.|+.++++.++ -||+|.+++.--=+ .-
T Consensus 21 eeL~kQk~eL~~~l~~l~~e~~~R~~~i~-------el~akidd~Lk~l~--~EklAkldLE~RLs------------Kt 79 (101)
T 1d7m_A 21 EQLIKQKDQLNSLLASLESEGAEREKRLR-------ELEAKLDETLKNLE--LEKLARMELEARLA------------KT 79 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHH--HHHHHHHHHHHHHH------------HH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHccc--HHHHHHHHHHHHHh------------hh
Confidence 34555555555544444444444444433 56677777777766 36677666542211 12
Q ss_pred hhhHHHHHHHHHHHHHH
Q 005043 656 EHDVAFLKAVLDDTQKE 672 (717)
Q Consensus 656 ~~~~~~~~~~~~~~~~~ 672 (717)
|.|-|.|.--|-+++-|
T Consensus 80 EKDkAiLELkLaE~~De 96 (101)
T 1d7m_A 80 EKDRAILELKLAEAIDE 96 (101)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHhhhh
Confidence 55666655555555443
No 350
>3ba0_A Macrophage metalloelastase; FULL-length MMP-12, hemopexin domain, catalytic domain, domain interaction., calcium, extracellular matrix; 3.00A {Homo sapiens} PDB: 2jxy_A
Probab=62.29 E-value=1.6e+02 Score=30.98 Aligned_cols=157 Identities=15% Similarity=0.123 Sum_probs=80.7
Q ss_pred EEEEECCEEEEEcccCCCCCcccEEEEEcCCCce--EEccccccCCCCCCCCCCCcccceEEEEE--CCEEEEEeccCCC
Q 005043 93 AAAVIGNKMIVVGGESGNGLLDDVQVLNFDRFSW--TAASSKLYLSPSSLPLKIPACRGHSLISW--GKKVLLVGGKTDS 168 (717)
Q Consensus 93 aav~~~~~lyV~GG~~~~~~~~~v~~yd~~t~~W--~~l~~~~~~~~~~~~~~~p~r~~hs~v~~--~~~Iyv~GG~~~~ 168 (717)
+++.+++++|+|=|. -+|+++.....- ..+... . ..+|.... ++... ++++|+|-|.
T Consensus 185 Av~~~~g~~~fFkg~-------~~Wr~~~~~~~~~p~~I~~~-------w-pgLP~~iD-Aa~~~~~~g~~~fFkg~--- 245 (365)
T 3ba0_A 185 AVTTVGNKIFFFKDR-------FFWLKVSERPKTSVNLISSL-------W-PTLPSGIE-AAYEIEARNQVFLFKDD--- 245 (365)
T ss_dssp CEEEETTEEEEEETT-------EEEECCSSCCCCCEEEHHHH-------C-SSCCSSCC-EEEEEGGGTEEEEEETT---
T ss_pred eEEEcCCeEEEEeCC-------EEEEEcCCCccCCccchhhh-------c-cCCCCCcc-EEEEecCCCEEEEEeCC---
Confidence 455679999999763 367765443211 111110 0 01222222 33333 7899999774
Q ss_pred CCCceEEEEEECCCCc--E-EEeeecCCCCCC--ceeeEEEEE--CCEEEEEccccCCCCCcCcEEEEEcCCCceEeccC
Q 005043 169 GSDRVSVWTFDTETEC--W-SVVEAKGDIPVA--RSGHTVVRA--SSVLILFGGEDGKRRKLNDLHMFDLKSLTWLPLHC 241 (717)
Q Consensus 169 ~~~~~~v~~yD~~t~~--W-~~l~~~g~~P~~--R~~hs~~~~--~~~Lyv~GG~~~~~~~~~~v~~yD~~t~~W~~l~~ 241 (717)
.+|+|+..... + ..+... .+|.. ... ++... ++++|+|-| +..|+||..+.+-..--+
T Consensus 246 -----~yWr~~~~~~~~gyPk~I~~~-GlP~~~~~ID-AA~~~~~~~~~yfFkG--------~~yw~yd~~~~~v~~gyP 310 (365)
T 3ba0_A 246 -----KYWLISNLRPEPNYPKSIHSF-GFPNFVKKID-AAVFNPRFYRTYFFVD--------NQYWRYDERRQMMDPGYP 310 (365)
T ss_dssp -----EEEECSTTSCTTTCSEETTTT-TCCTTCCCCC-EEEEETTTTEEEEEET--------TEEEEEETTTTEECSSCC
T ss_pred -----EEEEEcCCcccCCCCceeeec-cCCCCCCCcC-EEEEeCCCCEEEEEEC--------CEEEEEeCCcceecCCCC
Confidence 48888754211 1 112111 13432 222 33333 479999955 468999986654221100
Q ss_pred C----CCCCCCCcccEEEEECCcEEEEEcCCCCCCCCCeEEEEECCCCcEEEe
Q 005043 242 T----GTGPSPRSNHVAALYDDKNLLIFGGSSKSKTLNDLYSLDFETMIWTRI 290 (717)
Q Consensus 242 ~----g~~P~~R~~~aa~~~~~~~lyV~GG~~~~~~~ndv~~yd~~t~~W~~v 290 (717)
. +-...+..--++....+..+|+|-| +..|+||..+.+-...
T Consensus 311 k~I~~~f~g~p~~iDaA~~~~~g~~YfFkg-------~~ywr~d~~~~~v~~~ 356 (365)
T 3ba0_A 311 KLITKNFQGIGPKIDAVFYSKNKYYYFFQG-------SNQFEYDFLLQRITKT 356 (365)
T ss_dssp CCHHHHSTTCCSSCSEEEEETTTEEEEEET-------TEEEEEETTTTEEEEE
T ss_pred cchhhcCCCCCCccceeeEecCCcEEEEeC-------CEEEEEECCccEEecc
Confidence 0 0011122233444553334888877 3589999988776553
No 351
>3bas_A Myosin heavy chain, striated muscle/general control protein GCN4 chimera; alpha-helical coiled coil, disorder, salt links; 2.30A {Argopecten irradians} SCOP: h.1.26.1 PDB: 1nkn_A 3bat_A
Probab=61.89 E-value=11 Score=31.60 Aligned_cols=53 Identities=15% Similarity=0.224 Sum_probs=43.1
Q ss_pred cchhHHHHHHHhhHHHHHhhhhhHHhhHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 005043 583 GILEGQLAAALVNREAAEKNFSSVLKSRQEMEKKLADSLKEMELLKEKLAGLE 635 (717)
Q Consensus 583 ~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 635 (717)
+.-+.++.+--.....+++++...-+.|.++|.+....+.|+..|-+.++.+|
T Consensus 10 ~~~eeEm~~~eeel~~lke~l~k~e~~rkele~~~~~l~~ek~~L~~ql~eaE 62 (89)
T 3bas_A 10 ARQEEEMKEQLKQMDKMKEDLAKTERIKKELEEQNVTLLEQKNDLFGSMKQLE 62 (89)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH
Confidence 45567777777778888888888889999999999999999999888855444
No 352
>3s4r_A Vimentin; alpha-helix, cytoskeleton, intermediate filament, structural; 2.45A {Homo sapiens} PDB: 3ssu_A
Probab=61.59 E-value=33 Score=28.88 Aligned_cols=21 Identities=29% Similarity=0.240 Sum_probs=10.6
Q ss_pred HHHHHHHHHHHHhcchhHHHH
Q 005043 570 FYESKMAALIRKNGILEGQLA 590 (717)
Q Consensus 570 ~~~~~~~~~~~~~~~~~~~~~ 590 (717)
.|=.|+..|=+.|..||.++.
T Consensus 20 syIdKVR~LEqqN~~Le~~i~ 40 (93)
T 3s4r_A 20 NLIDKVRFLEQQNKILLAELE 40 (93)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 344444455555555555553
No 353
>2j04_A TAU60, YPL007P, hypothetical protein YPL007C; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}
Probab=60.72 E-value=2.2e+02 Score=32.09 Aligned_cols=180 Identities=16% Similarity=0.142 Sum_probs=93.6
Q ss_pred CCEEEEEeccCCCCCCceEEEEEECCCCcEEEeeecCCCC-CCceeeEEEEE-CCEEEEEccccCCCCCcCcEEEEEcCC
Q 005043 156 GKKVLLVGGKTDSGSDRVSVWTFDTETECWSVVEAKGDIP-VARSGHTVVRA-SSVLILFGGEDGKRRKLNDLHMFDLKS 233 (717)
Q Consensus 156 ~~~Iyv~GG~~~~~~~~~~v~~yD~~t~~W~~l~~~g~~P-~~R~~hs~~~~-~~~Lyv~GG~~~~~~~~~~v~~yD~~t 233 (717)
+++.++.++.++ .+.+||..+ .+..+. ..++ ..+..++++.. ++++++.||.++ .+.+||+.+
T Consensus 96 dG~~LAs~s~dg------~V~iwd~~~-~l~~l~--~~~~~~~~sv~svafSPDG~~LAsgs~DG------tVkIWd~~~ 160 (588)
T 2j04_A 96 IDDWMAVLSNNG------NVSVFKDNK-MLTNLD--SKGNLSSRTYHCFEWNPIESSIVVGNEDG------ELQFFSIRK 160 (588)
T ss_dssp SSSCEEEEETTS------CEEEEETTE-EEEECC--CSSCSTTTCEEEEEECSSSSCEEEEETTS------EEEEEECCC
T ss_pred CCCEEEEEeCCC------cEEEEeCCc-eeeecc--CCCccccccEEEEEEcCCCCEEEEEcCCC------EEEEEECCC
Confidence 667777776542 477777544 455443 2232 23455555553 578888887654 478889887
Q ss_pred Cc--------eEeccCCCCCC-CCCcccEEEEECCcEEEEEcCCCCCCCCCeEEEEECCCCc----EEEeecCCCCCCCC
Q 005043 234 LT--------WLPLHCTGTGP-SPRSNHVAALYDDKNLLIFGGSSKSKTLNDLYSLDFETMI----WTRIKIRGFHPSPR 300 (717)
Q Consensus 234 ~~--------W~~l~~~g~~P-~~R~~~aa~~~~~~~lyV~GG~~~~~~~ndv~~yd~~t~~----W~~v~~~g~~P~~R 300 (717)
+. ...+.. ... ..-.-.+.+...++ ++.+|.+ +.+..||+.++. |..+... ...
T Consensus 161 ~~l~~~~~i~l~ti~~--~~~gh~~~V~sVawSPdg--Laass~D-----~tVrlWd~~~~~~~~~~~tL~~~----h~~ 227 (588)
T 2j04_A 161 NSENTPEFYFESSIRL--SDAGSKDWVTHIVWYEDV--LVAALSN-----NSVFSMTVSASSHQPVSRMIQNA----SRR 227 (588)
T ss_dssp CTTTCCCCEEEEEEEC--SCTTCCCCEEEEEEETTE--EEEEETT-----CCEEEECCCSSSSCCCEEEEECC----CSS
T ss_pred Cccccccceeeeeeec--ccccccccEEEEEEcCCc--EEEEeCC-----CeEEEEECCCCccccceeeeccc----ccC
Confidence 63 122210 000 11122334445666 4555554 358889987655 4444211 111
Q ss_pred cceEEEEECCEEEEEecCCCCCccCeEEEEECCCCcEEEeecCCCCCCCCCcceEEEEEEeCCCcEEEEEcCCCCC
Q 005043 301 AGCCGVLCGTKWYIAGGGSRKKRHAETLIFDILKGEWSVAITSPSSSVTSNKGFTLVLVQHKEKDFLVAFGGIKKE 376 (717)
Q Consensus 301 ~~~sav~~~~~IyV~GG~~~~~~~~dv~~yD~~t~~W~~l~~~p~~~~~~r~g~s~v~v~~~~~~~I~v~GG~~~~ 376 (717)
.-.+++..+ .+++.++ + ..|..||+.+..-...... .......+.+.+..++..++.++.++.
T Consensus 228 ~V~svaFsg-~~LASa~-~-----~tIkLWd~~~~~~~~~~~g------h~~~V~~va~~~s~d~~~La~a~edG~ 290 (588)
T 2j04_A 228 KITDLKIVD-YKVVLTC-P-----GYVHKIDLKNYSISSLKTG------SLENFHIIPLNHEKESTILLMSNKTSY 290 (588)
T ss_dssp CCCCEEEET-TEEEEEC-S-----SEEEEEETTTTEEEEEECS------CCSCCCEEEETTCSSCEEEEECSSCEE
T ss_pred cEEEEEEEC-CEEEEEe-C-----CeEEEEECCCCeEEEEEcC------CCceEEEEEeeeCCCCCEEEEEcCCCC
Confidence 222333334 4444444 2 3699999988776444311 112223344422345667788886554
No 354
>3vu4_A KMHSV2; beta-propeller fold, protein transport; 2.60A {Kluyveromyces marxianus} PDB: 4av9_A 4av8_A 4exv_A
Probab=60.16 E-value=1.5e+02 Score=30.07 Aligned_cols=68 Identities=10% Similarity=0.054 Sum_probs=37.1
Q ss_pred EECCcEEEEEcCCCCCCCCCe-EEEEECCCCcEEEeecCCCCCCCCcceEEEEE-CCEEEEEecCCCCCccCeEEEEECC
Q 005043 256 LYDDKNLLIFGGSSKSKTLND-LYSLDFETMIWTRIKIRGFHPSPRAGCCGVLC-GTKWYIAGGGSRKKRHAETLIFDIL 333 (717)
Q Consensus 256 ~~~~~~lyV~GG~~~~~~~nd-v~~yd~~t~~W~~v~~~g~~P~~R~~~sav~~-~~~IyV~GG~~~~~~~~dv~~yD~~ 333 (717)
...+..+++.|+.++ . +.+||+.+..-...-..+. ....-.+++.. ++++++.|+.++ .+.+||+.
T Consensus 203 ~s~~g~~l~s~s~d~-----~~v~iwd~~~~~~~~~~~~g~--h~~~v~~~~~s~~~~~l~s~s~d~-----~v~iw~~~ 270 (355)
T 3vu4_A 203 LNRKSDMVATCSQDG-----TIIRVFKTEDGVLVREFRRGL--DRADVVDMKWSTDGSKLAVVSDKW-----TLHVFEIF 270 (355)
T ss_dssp ECTTSSEEEEEETTC-----SEEEEEETTTCCEEEEEECTT--CCSCEEEEEECTTSCEEEEEETTC-----EEEEEESS
T ss_pred ECCCCCEEEEEeCCC-----CEEEEEECCCCcEEEEEEcCC--CCCcEEEEEECCCCCEEEEEECCC-----EEEEEEcc
Confidence 333433677777653 4 8899998765433221110 11112222222 677888887653 48888876
Q ss_pred CC
Q 005043 334 KG 335 (717)
Q Consensus 334 t~ 335 (717)
..
T Consensus 271 ~~ 272 (355)
T 3vu4_A 271 ND 272 (355)
T ss_dssp CC
T ss_pred CC
Confidence 54
No 355
>2b9c_A Striated-muscle alpha tropomyosin; alpha-helix, coiled coil, alanine, axial stagger, radius, SIDE-chain packing, crystal packing; 2.30A {Rattus norvegicus} SCOP: h.1.5.1
Probab=59.97 E-value=26 Score=32.15 Aligned_cols=58 Identities=29% Similarity=0.226 Sum_probs=41.7
Q ss_pred HHHHhcchhHHHHHHHhhHHHHHhhhhhHHhhHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 005043 578 LIRKNGILEGQLAAALVNREAAEKNFSSVLKSRQEMEKKLADSLKEMELLKEKLAGLE 635 (717)
Q Consensus 578 ~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 635 (717)
-=.+-..||.||..|...-+.|+.+...|.+--..+|..|..+....+....|+..+|
T Consensus 50 deEr~~~lE~qLkeak~~aeeadrKyeE~~RKl~~~E~dLeraeeRae~aE~k~~eLE 107 (147)
T 2b9c_A 50 DEEKMEIQEIQLKEAKHIAEDADRKYEEVARKLVIIESDLERAEERAELSEGKCAELE 107 (147)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3345568999999999999999988777766666666666666666666666655554
No 356
>3oyo_A Hemopexin fold protein CP4; seeds, plant protein; 2.10A {Vigna unguiculata}
Probab=59.73 E-value=1.3e+02 Score=29.26 Aligned_cols=146 Identities=12% Similarity=0.084 Sum_probs=76.0
Q ss_pred ECCEEEEEeccCCCCCCceEEEEEEC------CCCcEEEeeec---CCCCC-----CceeeEEEEECCEEEEEccccCCC
Q 005043 155 WGKKVLLVGGKTDSGSDRVSVWTFDT------ETECWSVVEAK---GDIPV-----ARSGHTVVRASSVLILFGGEDGKR 220 (717)
Q Consensus 155 ~~~~Iyv~GG~~~~~~~~~~v~~yD~------~t~~W~~l~~~---g~~P~-----~R~~hs~~~~~~~Lyv~GG~~~~~ 220 (717)
..+.+|+|-|. -+|+++. ........... ..+|. .....+....++++|+|=|
T Consensus 12 ~~ge~~fFk~~--------~~wr~~~~~~~~~~~~~~~p~~I~~~Wp~LP~~~f~~~~iDAa~~~~~g~~~fFkg----- 78 (225)
T 3oyo_A 12 SEYEVYFFAKN--------KYVRLHYTPGASSDTILTNLRLISSGFPSLAGTPFAEPGIDCSFHTEASEAYVFSG----- 78 (225)
T ss_dssp STTEEEEEETT--------EEEEEECCTTCSCCEEEEEEEEHHHHCGGGTTSTTTTTCCSEEEECSTTEEEEEET-----
T ss_pred CCCEEEEEECC--------EEEEEecccccccCcccCCceehhhhcccCCCccCCCCCEeEEEEcCCCeEEEEcC-----
Confidence 37899999764 4888882 11112111100 12441 2222222225789999965
Q ss_pred CCcCcEEEEEcCCC----ceEe----ccC-CCCCCCC----CcccEEEEE-CCcEEEEEcCCCCCCCCCeEEEEECCCCc
Q 005043 221 RKLNDLHMFDLKSL----TWLP----LHC-TGTGPSP----RSNHVAALY-DDKNLLIFGGSSKSKTLNDLYSLDFETMI 286 (717)
Q Consensus 221 ~~~~~v~~yD~~t~----~W~~----l~~-~g~~P~~----R~~~aa~~~-~~~~lyV~GG~~~~~~~ndv~~yd~~t~~ 286 (717)
+.+|+||..++ .... +.. -+.+|.. ... ++... .+..+|+|-|. ..|+||..+.+
T Consensus 79 ---~~~W~~d~~~~t~~~~~~~gP~~I~~~wp~LP~~~~~~~ID-AA~~~~~~gk~yfFkG~-------~yw~~d~~~~~ 147 (225)
T 3oyo_A 79 ---NHSAYIDYAPGTTNDKILVGPTTIAEMFPVLNNTVFEDSID-SAFRSTKGKEVYLFKGN-------KYVRIAYDSKQ 147 (225)
T ss_dssp ---TEEEEEECCTTSSCCEEEEEEEEHHHHCGGGTTSTTTSCCC-EEEECSSTTEEEEEETT-------EEEEEETTTTE
T ss_pred ---CEEEEEecccccCCCceecCchhhhhcCCCCCCcccccccc-eEEEECCCCcEEEEeCC-------eEEEEECCCCe
Confidence 45788865321 1110 000 0123321 222 22222 23448999873 68999977665
Q ss_pred EEE----eecCCCCCC------CCcceEEEEE--CCEEEEEecCCCCCccCeEEEEECC
Q 005043 287 WTR----IKIRGFHPS------PRAGCCGVLC--GTKWYIAGGGSRKKRHAETLIFDIL 333 (717)
Q Consensus 287 W~~----v~~~g~~P~------~R~~~sav~~--~~~IyV~GG~~~~~~~~dv~~yD~~ 333 (717)
... +.. + .|. +..-.++... ++++|+|-| +..|+||..
T Consensus 148 ~~~gPk~I~~-~-fpg~~~~~f~~~iDAAf~~~~~g~~YfFkG-------~~ywr~d~~ 197 (225)
T 3oyo_A 148 LVGNIRNIGD-G-FPVLNGTEFESGIDACFASHKEPEAYLFKG-------QNYVRIDFT 197 (225)
T ss_dssp EEEEEEEHHH-H-CGGGTTSTTTTCCSEEEECSSTTEEEEEET-------TEEEEEECC
T ss_pred ecCCCcchhh-c-CCCcccccCCCCcCEEEEeCCCCEEEEEEC-------CEEEEEeCC
Confidence 443 111 0 111 3333344553 799999998 468999987
No 357
>2jee_A YIIU; FTSZ, septum, coiled-coil, cell division, cell cycle, hypothetical protein; 2.8A {Escherichia coli}
Probab=59.69 E-value=30 Score=28.42 Aligned_cols=44 Identities=20% Similarity=0.307 Sum_probs=19.3
Q ss_pred HHHHHHHHhcchhHHHHHHHhhHHHHHhhhhhHHhhHHHHHHHH
Q 005043 574 KMAALIRKNGILEGQLAAALVNREAAEKNFSSVLKSRQEMEKKL 617 (717)
Q Consensus 574 ~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~ 617 (717)
++..|..+|..|..+...|..++++.+....-.-..++.-+.+|
T Consensus 28 EieELKekN~~L~~e~~e~~~~~~~L~~en~qLk~E~~~wq~Rl 71 (81)
T 2jee_A 28 EIEELKEKNNSLSQEVQNAQHQREELERENNHLKEQQNGWQERL 71 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHH
Confidence 44444445555555555555444444443333333333333333
No 358
>3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens}
Probab=59.47 E-value=2.6e+02 Score=32.60 Aligned_cols=188 Identities=11% Similarity=-0.009 Sum_probs=102.6
Q ss_pred CCEEEEEcccCCCCCcccEEEEEcCCC----ceEEccccccCCCCCCCCCCCcccceEEEE--ECCEEEEEeccCCCCCC
Q 005043 98 GNKMIVVGGESGNGLLDDVQVLNFDRF----SWTAASSKLYLSPSSLPLKIPACRGHSLIS--WGKKVLLVGGKTDSGSD 171 (717)
Q Consensus 98 ~~~lyV~GG~~~~~~~~~v~~yd~~t~----~W~~l~~~~~~~~~~~~~~~p~r~~hs~v~--~~~~Iyv~GG~~~~~~~ 171 (717)
+++||+.-... ..++++++... ....+... ... .-.++++ .+++||+.-..
T Consensus 435 ~~~lY~sD~~~-----~~I~~~~l~g~~~~~~~~~vi~~----------~l~--~P~GLAvD~~~~~LY~tD~~------ 491 (791)
T 3m0c_C 435 SNRIYWSDLSQ-----RMICSTQLDRAHGVSSYDTVISR----------DIQ--APDGLAVDWIHSNIYWTDSV------ 491 (791)
T ss_dssp TTEEEEEETTT-----TEEEEEEC--------CEEEECS----------SCS--CCCEEEEETTTTEEEEEETT------
T ss_pred CCeeEEeeccc-----eeEEEEeccCCCCCcceeEEEec----------CCC--CcceeeeeecCCcEEEEecC------
Confidence 57788875432 35788887652 22222221 011 1123444 36799998432
Q ss_pred ceEEEEEECCCCcEEEeeecCCCCCCceeeEEEEE--CCEEEEEccccCCCCCcCcEEEEEcCCCceEeccCCCCCCCCC
Q 005043 172 RVSVWTFDTETECWSVVEAKGDIPVARSGHTVVRA--SSVLILFGGEDGKRRKLNDLHMFDLKSLTWLPLHCTGTGPSPR 249 (717)
Q Consensus 172 ~~~v~~yD~~t~~W~~l~~~g~~P~~R~~hs~~~~--~~~Lyv~GG~~~~~~~~~~v~~yD~~t~~W~~l~~~g~~P~~R 249 (717)
...|+++++....-+.+.. ..+..| ..+++. ++.||+.-- + ....|+++++....-..+.. ..+.
T Consensus 492 ~~~I~v~~ldG~~~~~l~~-~~l~~P---~gIaVDp~~g~LYwtD~----g-~~~~I~~~~~dG~~~~~lv~-~~l~--- 558 (791)
T 3m0c_C 492 LGTVSVADTKGVKRKTLFR-ENGSKP---RAIVVDPVHGFMYWTDW----G-TPAKIKKGGLNGVDIYSLVT-ENIQ--- 558 (791)
T ss_dssp TTEEEEEETTSSSEEEEEE-CTTCCE---EEEEEETTTTEEEEEEC----S-SSCEEEEEETTSCCEEEEEC-SSCS---
T ss_pred CCeEEEEeCCCCeEEEEEe-CCCCCc---ceEEEecCCCCEEEecC----C-CCCeEEEEecCCCceEEEEe-CCCC---
Confidence 2379999998766555542 122222 244443 578998731 1 12569999987655444321 1221
Q ss_pred cccEEEEE--CCcEEEEEcCCCCCCCCCeEEEEECCCCcEEEeecC-CCCCCCCcceEEEEECCEEEEEecCCCCCccCe
Q 005043 250 SNHVAALY--DDKNLLIFGGSSKSKTLNDLYSLDFETMIWTRIKIR-GFHPSPRAGCCGVLCGTKWYIAGGGSRKKRHAE 326 (717)
Q Consensus 250 ~~~aa~~~--~~~~lyV~GG~~~~~~~ndv~~yd~~t~~W~~v~~~-g~~P~~R~~~sav~~~~~IyV~GG~~~~~~~~d 326 (717)
......+ .++.||+.-.. .+.|++++++...-..+... +.++ ..+++++.+++||+.-... ..
T Consensus 559 -~P~GLavD~~~~~LYwaD~~-----~~~I~~~d~dG~~~~~v~~~~~~l~---~P~glav~~~~lYwtD~~~-----~~ 624 (791)
T 3m0c_C 559 -WPNGITLDLLSGRLYWVDSK-----LHSISSIDVNGGNRKTILEDEKRLA---HPFSLAVFEDKVFWTDIIN-----EA 624 (791)
T ss_dssp -CEEEEEEETTTTEEEEEETT-----TTEEEEEETTSCSCEEEEECTTTTS---SEEEEEEETTEEEEEETTT-----TE
T ss_pred -CceEEEEecCCCeEEEEeCC-----CCcEEEEecCCCceEEEecCCCccC---CCCEEEEeCCEEEEEECCC-----CE
Confidence 2233333 35568887432 35799999976544444321 1122 3346677889999987533 45
Q ss_pred EEEEECCCC
Q 005043 327 TLIFDILKG 335 (717)
Q Consensus 327 v~~yD~~t~ 335 (717)
|+++|..+.
T Consensus 625 I~~~dk~tG 633 (791)
T 3m0c_C 625 IFSANRLTG 633 (791)
T ss_dssp EEEEETTTC
T ss_pred EEEEeCCCC
Confidence 788886543
No 359
>3qne_A Seryl-tRNA synthetase, cytoplasmic; amino acid biosynthesis, CTG-clade, codon ambiguity, pathoge II aminoacyl-tRNA synthetase family; 2.00A {Candida albicans} PDB: 3qo7_A* 3qo8_A* 3qo5_A
Probab=59.29 E-value=26 Score=38.64 Aligned_cols=39 Identities=23% Similarity=0.216 Sum_probs=21.0
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhhhh-hhhcccccccccC
Q 005043 613 MEKKLADSLKEMELLKEKLAGLELAQ-EEANSLSNIVHSD 651 (717)
Q Consensus 613 ~~~~~~~~~~~~~~l~~~~~~~~~~~-~~~~~~~~~~~~~ 651 (717)
+.+++..+.+++..|++++..+|..- +....|-|++|.+
T Consensus 76 l~~~~~~l~~~i~~le~~~~~~~~~~~~~l~~iPN~~~~~ 115 (485)
T 3qne_A 76 LIAEKEKLSNEKKEIIEKEAEADKNLRSKINQVGNIVHES 115 (485)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCCCCCTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCcc
Confidence 33334444444444444444443332 5567799999965
No 360
>2zvf_A Alanyl-tRNA synthetase; C-terminal, oligomerization domain, aminoacyl-tRNA synthetase, ATP-binding, cytoplasm, ligase, nucleotide-binding; 3.20A {Archaeoglobus fulgidus}
Probab=59.10 E-value=12 Score=34.84 Aligned_cols=68 Identities=24% Similarity=0.300 Sum_probs=37.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhhhh-----hhhcccccccccCCccchhhHHHHHHHHHHHHHHhhhhccchhhcc
Q 005043 611 QEMEKKLADSLKEMELLKEKLAGLELAQ-----EEANSLSNIVHSDNVRLEHDVAFLKAVLDDTQKELHSTRGVLAGER 684 (717)
Q Consensus 611 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 684 (717)
+.+.+.+.+..+|++.|+++++..+..+ ++.|...-+++ .+ +-|..+|+.+.++.... +.--+|++.-
T Consensus 35 ~~l~~e~k~l~ke~~~l~~~~a~~~~~~l~~~~~~i~g~~~~~~--~~--~~d~~~lr~~~~~l~~~--~~vv~l~~~~ 107 (171)
T 2zvf_A 35 ERFFEEWKDQRKEIERLKSVIADLWADILMERAEEFDSMKVVAE--VV--DADMQALQKLAERLAEK--GAVGCLMAKG 107 (171)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCEESSSCEEEEE--EC--SCCHHHHHHHHHHHHHT--TEEEEEEEEC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcEEeCCEEEEEE--Ee--CCCHHHHHHHHHHHhcC--CCEEEEEEcC
Confidence 3344445555555666666666543211 12233332222 12 67899999999988665 5555566543
No 361
>3k6s_A Integrin alpha-X; cell receptor, adhesion molecule, cell adhesion, pyrrolidone carboxylic acid; HET: NAG MAN; 3.50A {Homo sapiens} PDB: 3k71_A* 3k72_A*
Probab=58.99 E-value=1.2e+02 Score=37.05 Aligned_cols=184 Identities=14% Similarity=0.131 Sum_probs=100.4
Q ss_pred ceEEEEECCEEEEEeccCCCCCCceEEEEEECCCCcEE-Eeee-cCCCCCCceeeEEEEE---CCEEEEEccccCCCCCc
Q 005043 149 GHSLISWGKKVLLVGGKTDSGSDRVSVWTFDTETECWS-VVEA-KGDIPVARSGHTVVRA---SSVLILFGGEDGKRRKL 223 (717)
Q Consensus 149 ~hs~v~~~~~Iyv~GG~~~~~~~~~~v~~yD~~t~~W~-~l~~-~g~~P~~R~~hs~~~~---~~~Lyv~GG~~~~~~~~ 223 (717)
++++....+.+ ++|.-. .......++.|+.....|- .... .+.+.....+++++.. +...||+|--.. ...
T Consensus 336 GfSa~~t~d~~-~~GapG-~~~w~G~v~~~~~~~~~~~~~~~~~~~~~~~sylGySVa~~~~~g~~~~v~GAP~~--~~~ 411 (1095)
T 3k6s_A 336 GFSAVFTPDGP-VLGAVG-SFTWSGGAFLYPPNMSPTFINMSQENVDMRDSYLGYSTELALWKGVQSLVLGAPRY--QHT 411 (1095)
T ss_dssp TSSEECCTTCC-EEEESC-STTTTBEEEECCSSSCCEEECCCSSCCCCCSCCBTSSEECCCCSSSCEEEEEETTG--GGT
T ss_pred cccceecCCcc-eEcccc-cCCccceeEEecCCCcceeeccccccccccccccceeeEEeccCCceEEEEEcccc--ccc
Confidence 55555555555 777542 2233456888887654443 2221 1223444556666552 234567764332 235
Q ss_pred CcEEEEEcCCCceEecc-CCCCCCCCCcccEEEEEC----C-cEEEEEcCCCC--CCCCCeEEEEECCC--CcEEEeecC
Q 005043 224 NDLHMFDLKSLTWLPLH-CTGTGPSPRSNHVAALYD----D-KNLLIFGGSSK--SKTLNDLYSLDFET--MIWTRIKIR 293 (717)
Q Consensus 224 ~~v~~yD~~t~~W~~l~-~~g~~P~~R~~~aa~~~~----~-~~lyV~GG~~~--~~~~ndv~~yd~~t--~~W~~v~~~ 293 (717)
..+++|......|.... ..|.-....++++.+..+ + .-++++|.-.. ......+++|.... ..|......
T Consensus 412 G~V~i~~~~~~~~~~~~~~~g~~~gs~fG~sva~~DvngDG~~DllvvGAP~~~~~~~~G~Vyvy~~~~~~~~~~~~~~l 491 (1095)
T 3k6s_A 412 GKAVIFTQVSRQWRMKAEVTGTQIGSYFGASLCSVDVDSDGSTDLVLIGAPHYYEQTRGGQVSVCPLPRGWRRWWCDAVL 491 (1095)
T ss_dssp CEEEEEECCTTTCCEEEEECCSSTTSCTTSCEEEECSSSSSSCCEEEEECSSCCSSCCCBCEEEEECCSSTTCCCSCSSC
T ss_pred ceEEEEEecCCcceEEeecccCcccCcCCceEEEEEeCCCCCccEEEECCccccCcCCCCEEEEEEeCCCCcceeeeEEe
Confidence 67999988877897653 234444556677777642 1 13667764321 12234688886543 457643221
Q ss_pred -CCC--CCCCcceEEEEEC-----C--EEEEEecCCCCCccCeEEEEECCCC-cE
Q 005043 294 -GFH--PSPRAGCCGVLCG-----T--KWYIAGGGSRKKRHAETLIFDILKG-EW 337 (717)
Q Consensus 294 -g~~--P~~R~~~sav~~~-----~--~IyV~GG~~~~~~~~dv~~yD~~t~-~W 337 (717)
+.. +..|++.+.+.++ | .| ++|..........+|+|.-... .|
T Consensus 492 ~g~~~~~~~~FG~sva~~gD~NgDG~~Dl-~VGAP~~~~~~G~vyi~~g~~~~g~ 545 (1095)
T 3k6s_A 492 YGEQGHPWGRFGAALTVLGDVNGDKLTDV-VIGAPGEEENRGAVYLFHGVLGPSI 545 (1095)
T ss_dssp CCCCSCSSCCBTSCEEEEECSSSSSCCEE-EEECTTTTTSCCBEEEEEBCSSSCB
T ss_pred ecccCCccccCccceEeecccCCCCCcCE-EEeCCcCCCCCCEEEEecCCCCCCc
Confidence 211 3578888887652 1 24 4553333334567899987655 45
No 362
>3v65_B Low-density lipoprotein receptor-related protein; laminin-G, beta-propeller, protein binding; 3.30A {Rattus norvegicus}
Probab=58.87 E-value=1.8e+02 Score=30.41 Aligned_cols=218 Identities=10% Similarity=-0.025 Sum_probs=119.2
Q ss_pred ccEEEEEcCCCceEEccccccCCCCCCCCCCCcccceEEEEE--CCEEEEEeccCCCCCCceEEEEEECCCCcEEEeeec
Q 005043 114 DDVQVLNFDRFSWTAASSKLYLSPSSLPLKIPACRGHSLISW--GKKVLLVGGKTDSGSDRVSVWTFDTETECWSVVEAK 191 (717)
Q Consensus 114 ~~v~~yd~~t~~W~~l~~~~~~~~~~~~~~~p~r~~hs~v~~--~~~Iyv~GG~~~~~~~~~~v~~yD~~t~~W~~l~~~ 191 (717)
+.+.++++.+.....+... .....+++.. ++.||+.--. ...++++++.+...+.+...
T Consensus 96 ~~I~~i~~~~~~~~~~~~~-------------~~~~~gl~~d~~~~~ly~~D~~------~~~I~r~~~~g~~~~~~~~~ 156 (386)
T 3v65_B 96 IDIRQVLPHRSEYTLLLNN-------------LENAIALDFHHRRELVFWSDVT------LDRILRANLNGSNVEEVVST 156 (386)
T ss_dssp SCEEEECTTSCCCEEEECS-------------CSCEEEEEEETTTTEEEEEETT------TTEEEEEETTSCCEEEEECS
T ss_pred ccceeeccCCCcEEEEecC-------------CCccEEEEEecCCCeEEEEeCC------CCcEEEEecCCCCcEEEEeC
Confidence 3678888887766655431 1112344443 5889988432 23699999988776665422
Q ss_pred CCCCCCceeeEEEE--ECCEEEEEccccCCCCCcCcEEEEEcCCCceEeccCCCCCCCCCcccEEEEE-CCcEEEEEcCC
Q 005043 192 GDIPVARSGHTVVR--ASSVLILFGGEDGKRRKLNDLHMFDLKSLTWLPLHCTGTGPSPRSNHVAALY-DDKNLLIFGGS 268 (717)
Q Consensus 192 g~~P~~R~~hs~~~--~~~~Lyv~GG~~~~~~~~~~v~~yD~~t~~W~~l~~~g~~P~~R~~~aa~~~-~~~~lyV~GG~ 268 (717)
+ +..+ ..+++ .++.||+.-. ..+.++++++....-..+.. ..+..|+ ..++. .++.||+.--.
T Consensus 157 ~-~~~p---~glavd~~~g~lY~~d~------~~~~I~~~~~dg~~~~~l~~-~~l~~P~---giavdp~~g~ly~td~~ 222 (386)
T 3v65_B 157 G-LESP---GGLAVDWVHDKLYWTDS------GTSRIEVANLDGAHRKVLLW-QSLEKPR---AIALHPMEGTIYWTDWG 222 (386)
T ss_dssp S-CSCC---CCEEEETTTTEEEEEET------TTTEEEECBTTSCSCEEEEC-SSCSCEE---EEEEETTTTEEEEEECS
T ss_pred C-CCCc---cEEEEEeCCCeEEEEcC------CCCeEEEEeCCCCceEEeec-CCCCCCc---EEEEEcCCCeEEEeccC
Confidence 1 2222 23333 3689998742 23568888887554333321 1222222 23333 24557776422
Q ss_pred CCCCCCCeEEEEECCCCcEEEeecCCCCCCCCcceEEEEE--CCEEEEEecCCCCCccCeEEEEECCCCcEEEeecCCCC
Q 005043 269 SKSKTLNDLYSLDFETMIWTRIKIRGFHPSPRAGCCGVLC--GTKWYIAGGGSRKKRHAETLIFDILKGEWSVAITSPSS 346 (717)
Q Consensus 269 ~~~~~~ndv~~yd~~t~~W~~v~~~g~~P~~R~~~sav~~--~~~IyV~GG~~~~~~~~dv~~yD~~t~~W~~l~~~p~~ 346 (717)
. ...|++++++...-+.+...+ ...-.++++. +++||+.-... ..|+++|++...-..+....
T Consensus 223 ~----~~~I~r~~~dG~~~~~~~~~~----~~~PnGlavd~~~~~lY~aD~~~-----~~I~~~d~dG~~~~~~~~~~-- 287 (386)
T 3v65_B 223 N----TPRIEASSMDGSGRRIIADTH----LFWPNGLTIDYAGRRMYWVDAKH-----HVIERANLDGSHRKAVISQG-- 287 (386)
T ss_dssp S----SCEEEEEETTSCSCEEEECSS----CSCEEEEEEEGGGTEEEEEETTT-----TEEEEECTTSCSCEEEECSS--
T ss_pred C----CCEEEEEeCCCCCcEEEEECC----CCCeeeEEEeCCCCEEEEEECCC-----CEEEEEeCCCCeeEEEEECC--
Confidence 1 357999999765544443221 1111234443 68999987533 46999998764433333111
Q ss_pred CCCCCcceEEEEEEeCCCcEEEEEcCCCCCCCCeEEEEEccCCc
Q 005043 347 SVTSNKGFTLVLVQHKEKDFLVAFGGIKKEPSNQVEVLSIEKNE 390 (717)
Q Consensus 347 ~~~~r~g~s~v~v~~~~~~~I~v~GG~~~~~~n~v~vyd~~~~e 390 (717)
...-+++++. ++.||+.-- ..+.|..++..+.+
T Consensus 288 ---~~~P~giav~----~~~ly~td~----~~~~V~~~~~~~G~ 320 (386)
T 3v65_B 288 ---LPHPFAITVF----EDSLYWTDW----HTKSINSANKFTGK 320 (386)
T ss_dssp ---CSSEEEEEEE----TTEEEEEET----TTTEEEEEETTTCC
T ss_pred ---CCCceEEEEE----CCEEEEeeC----CCCeEEEEECCCCc
Confidence 1122444443 567887643 23478888865554
No 363
>3s4r_A Vimentin; alpha-helix, cytoskeleton, intermediate filament, structural; 2.45A {Homo sapiens} PDB: 3ssu_A
Probab=58.87 E-value=45 Score=28.07 Aligned_cols=82 Identities=26% Similarity=0.273 Sum_probs=46.9
Q ss_pred HHHHHHHHHHHHHHhcchhHHHHHHHhhHHHHHhhhhhHHhhHHHHHHHHHH-HHHHHHHHHHHHhhhhhhhhhhccccc
Q 005043 568 YQFYESKMAALIRKNGILEGQLAAALVNREAAEKNFSSVLKSRQEMEKKLAD-SLKEMELLKEKLAGLELAQEEANSLSN 646 (717)
Q Consensus 568 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~~~~~~~~ 646 (717)
.|.-..+.|..|-|--.||+|=..-.+..++...+- ...+.. -..+++.||.+|..+.
T Consensus 11 mq~LNdRlAsyIdKVR~LEqqN~~Le~~i~~l~~~~----------~~~~~~~ye~~i~~Lr~~i~~~~----------- 69 (93)
T 3s4r_A 11 LQELNDRFANLIDKVRFLEQQNKILLAELEQLKGQG----------KSRLGDLYEEEMRELRRQVDQLT----------- 69 (93)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHHH-----------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc----------CCCcHHHHHHHHHHHHHHHHHHH-----------
Confidence 477889999999999999888644322222221110 112222 2455566666665544
Q ss_pred ccccCCccchhhHHHHHHHHHHHHHHh
Q 005043 647 IVHSDNVRLEHDVAFLKAVLDDTQKEL 673 (717)
Q Consensus 647 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ 673 (717)
.||.|||-++.=|.+.+++..+.|
T Consensus 70 ---~ek~~l~~e~dnl~~~~~~~k~KL 93 (93)
T 3s4r_A 70 ---NDKARVEVERDNLAEDIMRLREKL 93 (93)
T ss_dssp ---HHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred ---HHHHHHHHHHHHHHHHHHHHHhhC
Confidence 235566666666666666665543
No 364
>2v4h_A NF-kappa-B essential modulator; transcription, metal-binding, NEMO - IKK gamma - NFKB pathwa darpin, transcription regulation; 2.9A {Mus musculus}
Probab=58.62 E-value=24 Score=30.57 Aligned_cols=18 Identities=17% Similarity=0.217 Sum_probs=8.2
Q ss_pred HHHHHHHHHHHHHhhhhh
Q 005043 619 DSLKEMELLKEKLAGLEL 636 (717)
Q Consensus 619 ~~~~~~~~l~~~~~~~~~ 636 (717)
....+++.||++++..+.
T Consensus 42 ~Kq~~idelk~ei~q~~~ 59 (110)
T 2v4h_A 42 AKQELIDKLKEEAEQHKI 59 (110)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 344444445554444433
No 365
>2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R
Probab=58.51 E-value=1.5e+02 Score=29.64 Aligned_cols=145 Identities=11% Similarity=0.097 Sum_probs=69.2
Q ss_pred CCEEEEEccccCCCCCcCcEEEEEcCCCceEe-ccCCCCCCCCCcccEEEEECCcEEEEEcCCCCCCCCCeEEEEECCCC
Q 005043 207 SSVLILFGGEDGKRRKLNDLHMFDLKSLTWLP-LHCTGTGPSPRSNHVAALYDDKNLLIFGGSSKSKTLNDLYSLDFETM 285 (717)
Q Consensus 207 ~~~Lyv~GG~~~~~~~~~~v~~yD~~t~~W~~-l~~~g~~P~~R~~~aa~~~~~~~lyV~GG~~~~~~~ndv~~yd~~t~ 285 (717)
++.+++.|+.+ ..+.+||+.+.+... +. + ....-.+++...+...++.||.++ .+..||+...
T Consensus 87 ~~~~l~s~s~D------~~v~lwd~~~~~~~~~~~--~---h~~~v~~v~~sp~~~~l~s~~~d~-----~i~~wd~~~~ 150 (343)
T 2xzm_R 87 ENCFAISSSWD------KTLRLWDLRTGTTYKRFV--G---HQSEVYSVAFSPDNRQILSAGAER-----EIKLWNILGE 150 (343)
T ss_dssp STTEEEEEETT------SEEEEEETTSSCEEEEEE--C---CCSCEEEEEECSSTTEEEEEETTS-----CEEEEESSSC
T ss_pred CCCEEEEEcCC------CcEEEEECCCCcEEEEEc--C---CCCcEEEEEECCCCCEEEEEcCCC-----EEEEEeccCC
Confidence 45666677654 348889988765432 21 1 111122333333333667777653 4888998644
Q ss_pred cEEEeecCCCCCCCCcceEEEEE--C----------CEEEEEecCCCCCccCeEEEEECCCCcEEEeecCCCCCCCCCcc
Q 005043 286 IWTRIKIRGFHPSPRAGCCGVLC--G----------TKWYIAGGGSRKKRHAETLIFDILKGEWSVAITSPSSSVTSNKG 353 (717)
Q Consensus 286 ~W~~v~~~g~~P~~R~~~sav~~--~----------~~IyV~GG~~~~~~~~dv~~yD~~t~~W~~l~~~p~~~~~~r~g 353 (717)
.-...... ........++.+ + +.+++.|+.++ .+.+||.....-..+. . ....
T Consensus 151 ~~~~~~~~---~~~~~~v~~~~~~~~~~~~~~~~~~~~~l~s~~~d~-----~i~iwd~~~~~~~~~~---~----h~~~ 215 (343)
T 2xzm_R 151 CKFSSAEK---ENHSDWVSCVRYSPIMKSANKVQPFAPYFASVGWDG-----RLKVWNTNFQIRYTFK---A----HESN 215 (343)
T ss_dssp EEEECCTT---TSCSSCEEEEEECCCCCSCSCCCSSCCEEEEEETTS-----EEEEEETTTEEEEEEE---C----CSSC
T ss_pred ceeeeecc---cCCCceeeeeeeccccccccccCCCCCEEEEEcCCC-----EEEEEcCCCceeEEEc---C----cccc
Confidence 33222211 111111222222 1 14667777553 4788884432211111 0 1112
Q ss_pred eEEEEEEeCCCcEEEEEcCCCCCCCCeEEEEEccC
Q 005043 354 FTLVLVQHKEKDFLVAFGGIKKEPSNQVEVLSIEK 388 (717)
Q Consensus 354 ~s~v~v~~~~~~~I~v~GG~~~~~~n~v~vyd~~~ 388 (717)
...+.+. .++.+++.||.++ .|.+||+..
T Consensus 216 v~~~~~s--~~g~~l~sgs~dg----~v~iwd~~~ 244 (343)
T 2xzm_R 216 VNHLSIS--PNGKYIATGGKDK----KLLIWDILN 244 (343)
T ss_dssp EEEEEEC--TTSSEEEEEETTC----EEEEEESSC
T ss_pred ceEEEEC--CCCCEEEEEcCCC----eEEEEECCC
Confidence 2333333 2444667777543 578888843
No 366
>1cii_A Colicin IA; bacteriocin, ION channel formation, transmembrane protein; 3.00A {Escherichia coli} SCOP: f.1.1.1 h.4.3.1
Probab=57.69 E-value=33 Score=36.95 Aligned_cols=49 Identities=27% Similarity=0.352 Sum_probs=36.1
Q ss_pred HHHHHHHhhHHHHHh-------hhhhHHhhHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 005043 587 GQLAAALVNREAAEK-------NFSSVLKSRQEMEKKLADSLKEMELLKEKLAGLE 635 (717)
Q Consensus 587 ~~~~~~~~~~~~~e~-------~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 635 (717)
+-|++|-+...+||+ ++|-++...|+++.+|...++|++.+|-++++++
T Consensus 356 QRlddArNEItsaeSaInslqaqvSa~t~e~k~A~d~l~a~~kek~~~~n~~a~~~ 411 (602)
T 1cii_A 356 QRLLDARNKITSAESAVNSARNNLSARTNEQKHANDALNALLKEKENIRNQLSGIN 411 (602)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhh
Confidence 445555555555555 6666788889999999999999999877776654
No 367
>3k6s_A Integrin alpha-X; cell receptor, adhesion molecule, cell adhesion, pyrrolidone carboxylic acid; HET: NAG MAN; 3.50A {Homo sapiens} PDB: 3k71_A* 3k72_A*
Probab=57.50 E-value=1.9e+02 Score=35.23 Aligned_cols=187 Identities=10% Similarity=0.077 Sum_probs=102.3
Q ss_pred eeeEEEEECCEEEEEccccCCCCCcCcEEEEEcCCCceE-eccC-CCCCCCCCcccEEEEE--CCcEEEEEcCCCCCCCC
Q 005043 199 SGHTVVRASSVLILFGGEDGKRRKLNDLHMFDLKSLTWL-PLHC-TGTGPSPRSNHVAALY--DDKNLLIFGGSSKSKTL 274 (717)
Q Consensus 199 ~~hs~~~~~~~Lyv~GG~~~~~~~~~~v~~yD~~t~~W~-~l~~-~g~~P~~R~~~aa~~~--~~~~lyV~GG~~~~~~~ 274 (717)
.++++...++.+ ++|.-... .....++.|+.....|- .... .+.......++++++- ++...||+|--. ....
T Consensus 335 ~GfSa~~t~d~~-~~GapG~~-~w~G~v~~~~~~~~~~~~~~~~~~~~~~~sylGySVa~~~~~g~~~~v~GAP~-~~~~ 411 (1095)
T 3k6s_A 335 EGFSAVFTPDGP-VLGAVGSF-TWSGGAFLYPPNMSPTFINMSQENVDMRDSYLGYSTELALWKGVQSLVLGAPR-YQHT 411 (1095)
T ss_dssp TTSSEECCTTCC-EEEESCST-TTTBEEEECCSSSCCEEECCCSSCCCCCSCCBTSSEECCCCSSSCEEEEEETT-GGGT
T ss_pred ccccceecCCcc-eEcccccC-CccceeEEecCCCcceeeccccccccccccccceeeEEeccCCceEEEEEccc-cccc
Confidence 445555555555 78765443 35667888887655433 2221 1223333445555442 233356766332 2334
Q ss_pred CeEEEEECCCCcEEEeec-CCCCCCCCcceEEEEEC------CEEEEEecCCC--CCccCeEEEEECCC--CcEEEeecC
Q 005043 275 NDLYSLDFETMIWTRIKI-RGFHPSPRAGCCGVLCG------TKWYIAGGGSR--KKRHAETLIFDILK--GEWSVAITS 343 (717)
Q Consensus 275 ndv~~yd~~t~~W~~v~~-~g~~P~~R~~~sav~~~------~~IyV~GG~~~--~~~~~dv~~yD~~t--~~W~~l~~~ 343 (717)
..+++|......|+.... .|.......+++.+..| ..++++|.-.. ......+++|.... ..|......
T Consensus 412 G~V~i~~~~~~~~~~~~~~~g~~~gs~fG~sva~~DvngDG~~DllvvGAP~~~~~~~~G~Vyvy~~~~~~~~~~~~~~l 491 (1095)
T 3k6s_A 412 GKAVIFTQVSRQWRMKAEVTGTQIGSYFGASLCSVDVDSDGSTDLVLIGAPHYYEQTRGGQVSVCPLPRGWRRWWCDAVL 491 (1095)
T ss_dssp CEEEEEECCTTTCCEEEEECCSSTTSCTTSCEEEECSSSSSSCCEEEEECSSCCSSCCCBCEEEEECCSSTTCCCSCSSC
T ss_pred ceEEEEEecCCcceEEeecccCcccCcCCceEEEEEeCCCCCccEEEECCccccCcCCCCEEEEEEeCCCCcceeeeEEe
Confidence 679999988888987653 33334456677777642 35777774321 22335688886543 457743322
Q ss_pred CCCC--CCCCcceEEEEEEe-CCCcE--EEEEcCC-CCCCCCeEEEEEccCC
Q 005043 344 PSSS--VTSNKGFTLVLVQH-KEKDF--LVAFGGI-KKEPSNQVEVLSIEKN 389 (717)
Q Consensus 344 p~~~--~~~r~g~s~v~v~~-~~~~~--I~v~GG~-~~~~~n~v~vyd~~~~ 389 (717)
.... +..++|.+++.+.+ ++++. | ++|.- .......+++|.-..+
T Consensus 492 ~g~~~~~~~~FG~sva~~gD~NgDG~~Dl-~VGAP~~~~~~G~vyi~~g~~~ 542 (1095)
T 3k6s_A 492 YGEQGHPWGRFGAALTVLGDVNGDKLTDV-VIGAPGEEENRGAVYLFHGVLG 542 (1095)
T ss_dssp CCCCSCSSCCBTSCEEEEECSSSSSCCEE-EEECTTTTTSCCBEEEEEBCSS
T ss_pred ecccCCccccCccceEeecccCCCCCcCE-EEeCCcCCCCCCEEEEecCCCC
Confidence 2221 35788888887654 33332 4 33332 2233567888887655
No 368
>3mq7_A Bone marrow stromal antigen 2; HIV, antiviral protein; 2.28A {Homo sapiens} PDB: 3mqc_A 3mqb_A 3mkx_A 3nwh_A 2xg7_A* 2x7a_A
Probab=57.39 E-value=38 Score=29.56 Aligned_cols=52 Identities=19% Similarity=0.222 Sum_probs=24.6
Q ss_pred chhHHHHHHHhhHHHHHh----------hhhhH-HhhHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 005043 584 ILEGQLAAALVNREAAEK----------NFSSV-LKSRQEMEKKLADSLKEMELLKEKLAGLE 635 (717)
Q Consensus 584 ~~~~~~~~~~~~~~~~e~----------~~~~~-~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 635 (717)
.|+.||+-|..+.-++|- .|..- .+.+-+-.+++.+..-|++.|++||..++
T Consensus 29 lLq~qLTqAQe~l~~~eaQAaTCNqTV~tL~~SL~~ekaq~q~~vqeLqgEI~~Lnq~Lq~a~ 91 (121)
T 3mq7_A 29 LLQQELTEAQKGFQDVEAQAATANHTVMALMASLDAEKAQGQKKVEELEGEITTLNHKLQDAS 91 (121)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456667666655555552 12111 11122224445555555555555555444
No 369
>3tc9_A Hypothetical hydrolase; 6-bladed beta-propeller, immunoglobulin-like, structural GEN joint center for structural genomics, JCSG; 2.23A {Bacteroides thetaiotaomicron}
Probab=57.30 E-value=1.5e+02 Score=31.62 Aligned_cols=144 Identities=16% Similarity=0.092 Sum_probs=77.2
Q ss_pred CCEEEEEeccCCCCCCceEEEEEECCCCcEEEeeecCCCCCCceeeEEEEE-C-CEEEEEccccCCCCCcCcEEEEEcCC
Q 005043 156 GKKVLLVGGKTDSGSDRVSVWTFDTETECWSVVEAKGDIPVARSGHTVVRA-S-SVLILFGGEDGKRRKLNDLHMFDLKS 233 (717)
Q Consensus 156 ~~~Iyv~GG~~~~~~~~~~v~~yD~~t~~W~~l~~~g~~P~~R~~hs~~~~-~-~~Lyv~GG~~~~~~~~~~v~~yD~~t 233 (717)
++.||+.--. ..+.+||+.++..+.+.. ...+ ...+++. + +.||+....... ....++.++..
T Consensus 149 ~g~Lyv~d~~-------~~I~~id~~~~~v~~~~~----~~~~-P~~ia~d~~G~~lyvad~~~~~--~~~~v~~~~~~- 213 (430)
T 3tc9_A 149 HNHLYLVGEQ-------HPTRLIDFEKEYVSTVYS----GLSK-VRTICWTHEADSMIITNDQNNN--DRPNNYILTRE- 213 (430)
T ss_dssp EEEEEEEEBT-------EEEEEEETTTTEEEEEEC----CCSC-EEEEEECTTSSEEEEEECCSCT--TSEEEEEEEGG-
T ss_pred CCeEEEEeCC-------CcEEEEECCCCEEEEEec----CCCC-cceEEEeCCCCEEEEEeCCCCc--ccceEEEEeCC-
Confidence 4788887331 579999999988887753 1122 2233332 3 458988643321 22346667764
Q ss_pred CceE---eccCCCCCCCCCcccEEEEEC-CcEEEEEcCCCCCCCCCeEEEEECCCCcEEEeecCCCCCCCCcceEEEEE-
Q 005043 234 LTWL---PLHCTGTGPSPRSNHVAALYD-DKNLLIFGGSSKSKTLNDLYSLDFETMIWTRIKIRGFHPSPRAGCCGVLC- 308 (717)
Q Consensus 234 ~~W~---~l~~~g~~P~~R~~~aa~~~~-~~~lyV~GG~~~~~~~ndv~~yd~~t~~W~~v~~~g~~P~~R~~~sav~~- 308 (717)
..|. .+. .+..| +.+++.. +..||+.--. .+.|++|++.+.....+...+....| ..++..
T Consensus 214 g~~~~~~~l~---~~~~p---~giavdp~~g~lyv~d~~-----~~~V~~~~~~~~~~~~~~~~~~~~~P---~gia~~p 279 (430)
T 3tc9_A 214 SGFKVITELT---KGQNC---NGAETHPINGELYFNSWN-----AGQVFRYDFTTQETTPLFTIQDSGWE---FHIQFHP 279 (430)
T ss_dssp GTSCSEEEEE---ECSSC---CCEEECTTTCCEEEEETT-----TTEEEEEETTTTEEEEEEECSSSSCC---EEEEECT
T ss_pred Cceeeeeeec---cCCCc---eEEEEeCCCCEEEEEECC-----CCEEEEEECCCCcEEEEEEcCCCCcc---eeEEEcC
Confidence 3343 222 12222 3344444 4447876432 24699999988766444333211111 133332
Q ss_pred -CCEEEEEecCCCCCccCeEEEEECC
Q 005043 309 -GTKWYIAGGGSRKKRHAETLIFDIL 333 (717)
Q Consensus 309 -~~~IyV~GG~~~~~~~~dv~~yD~~ 333 (717)
++.|||.--.. ..|++|+..
T Consensus 280 dG~~lyv~d~~~-----~~I~~~~~d 300 (430)
T 3tc9_A 280 SGNYAYIVVVNQ-----HYILRSDYD 300 (430)
T ss_dssp TSSEEEEEETTT-----TEEEEEEEE
T ss_pred CCCEEEEEECCC-----CEEEEEeCC
Confidence 34599986433 357777654
No 370
>3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha isoform; holoenzyme, PR55, WD repeat, hydrolase, iron, manganese binding, methylation, phosphoprotein, protein phosphatase; HET: 1ZN; 2.85A {Homo sapiens}
Probab=56.98 E-value=1.8e+02 Score=29.92 Aligned_cols=73 Identities=5% Similarity=0.044 Sum_probs=36.9
Q ss_pred EEEECCcEEEEEcCCCCCCCCCeEEEEECCCC--cEEEeecCCC-CCCCCcceEEEEE--CC-EEEEEecCCCCCccCeE
Q 005043 254 AALYDDKNLLIFGGSSKSKTLNDLYSLDFETM--IWTRIKIRGF-HPSPRAGCCGVLC--GT-KWYIAGGGSRKKRHAET 327 (717)
Q Consensus 254 a~~~~~~~lyV~GG~~~~~~~ndv~~yd~~t~--~W~~v~~~g~-~P~~R~~~sav~~--~~-~IyV~GG~~~~~~~~dv 327 (717)
++...+..+++.| .+ ..+.+||+.+. .+..+...+. .........++.+ ++ .+++.|+.++ .+
T Consensus 183 ~~~~~~~~~l~s~-~d-----~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg-----~i 251 (447)
T 3dw8_B 183 ISINSDYETYLSA-DD-----LRINLWHLEITDRSFNIVDIKPANMEELTEVITAAEFHPNSCNTFVYSSSKG-----TI 251 (447)
T ss_dssp EEECTTSSEEEEE-CS-----SEEEEEETTEEEEEEEEEECCCSSGGGCCCCEEEEEECSSCTTEEEEEETTS-----CE
T ss_pred EEEcCCCCEEEEe-CC-----CeEEEEECCCCCceeeeeecccccccccCcceEEEEECCCCCcEEEEEeCCC-----eE
Confidence 3333333356655 32 35899998732 2332221100 0011112223333 34 7888888664 48
Q ss_pred EEEECCCCcE
Q 005043 328 LIFDILKGEW 337 (717)
Q Consensus 328 ~~yD~~t~~W 337 (717)
.+||+.+...
T Consensus 252 ~iwd~~~~~~ 261 (447)
T 3dw8_B 252 RLCDMRASAL 261 (447)
T ss_dssp EEEETTTCSS
T ss_pred EEEECcCCcc
Confidence 9999987663
No 371
>3teq_A Stromal interaction molecule 1; signaling protein; 1.90A {Homo sapiens}
Probab=56.86 E-value=38 Score=28.94 Aligned_cols=42 Identities=19% Similarity=0.067 Sum_probs=35.7
Q ss_pred HHHHHHHHHHHHHHHhcchhHHHHHHHhhHHHHHhhhhhHHh
Q 005043 567 IYQFYESKMAALIRKNGILEGQLAAALVNREAAEKNFSSVLK 608 (717)
Q Consensus 567 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~ 608 (717)
++.+||.+++..-.+....|.||..|-..-|-..|+-+|++-
T Consensus 8 Lq~T~e~E~q~~~~kk~~aekql~~A~e~~eKl~KKrsS~~g 49 (101)
T 3teq_A 8 LQLTHEVEVQYYNIKKQNAEKQLMVAKEGAEKIKKKRNTLFG 49 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HhHhhHHHHHHHHHhhccHHHHHHHHHHHHHHHHHhhhchhe
Confidence 457999999999999999999999998888888887666653
No 372
>2dq3_A Seryl-tRNA synthetase; coiled-coil, homodimer, structural genomics, NPPSFA, nationa on protein structural and functional analyses; HET: SSA; 3.00A {Aquifex aeolicus}
Probab=55.72 E-value=12 Score=40.83 Aligned_cols=69 Identities=17% Similarity=0.270 Sum_probs=36.6
Q ss_pred cchhHHHHHHHhhHHHHHhhhhhHHhh---HHHHHHHHHHHHHHHHHHHHHHhhhhhh-hhhhcccccccccC
Q 005043 583 GILEGQLAAALVNREAAEKNFSSVLKS---RQEMEKKLADSLKEMELLKEKLAGLELA-QEEANSLSNIVHSD 651 (717)
Q Consensus 583 ~~~~~~~~~~~~~~~~~e~~~~~~~~~---~~~~~~~~~~~~~~~~~l~~~~~~~~~~-~~~~~~~~~~~~~~ 651 (717)
-.+..++.+..+.+-++-|.+....++ .+++.+++..+.+++..|++++..+|.. ++....|-|++|.+
T Consensus 40 r~~~~~~~~l~~~~n~~sk~i~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ipN~~~~~ 112 (425)
T 2dq3_A 40 REIIKRLEALRSERNKLSKEIGKLKREGKDTTEIQNRVKELKEEIDRLEEELRKVEEELKNTLLWIPNLPHPS 112 (425)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTGGGSSCSCTTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCCCCCTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhcCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCC
Confidence 344455555556666666655443222 2333344444444444555555444432 25567799999984
No 373
>3k29_A Putative uncharacterized protein; YSCO, type III secretion apparatus, S genomics, csgid; HET: MSE; 2.00A {Chlamydia trachomatis}
Probab=54.96 E-value=51 Score=30.66 Aligned_cols=85 Identities=25% Similarity=0.189 Sum_probs=46.3
Q ss_pred CchHHHHHHHHHHHHHHHhcchhHHHHHHHhhHHHHHhhhhhH---HhhHHHHHHHHHHHHHH---HHHHHHHHhhhhhh
Q 005043 564 PSSIYQFYESKMAALIRKNGILEGQLAAALVNREAAEKNFSSV---LKSRQEMEKKLADSLKE---MELLKEKLAGLELA 637 (717)
Q Consensus 564 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~---~~~~~~~~~~~~~~~~~---~~~l~~~~~~~~~~ 637 (717)
+|+=+.....=|+.+=.+-..+|.+++.+..-.+++.+.|..+ +...++-..|+ ...++ .|.+++.=--.|+.
T Consensus 69 t~~~i~~m~~yI~llrErea~lEqkVaeq~e~Ve~e~q~Le~ar~el~qArke~eKf-elHrqiwqaE~kre~E~qEElE 147 (169)
T 3k29_A 69 TSDAILKMKAYIKVVAIQLSEEEEKVNKQKENVLAASKELERAEVELTKRRKEEEKT-RLHKEEWMKEALKEEARQEEKE 147 (169)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHh
Confidence 3444444444455555555567777777766666666666544 33344444445 33333 23344444445566
Q ss_pred hhhhcccccccc
Q 005043 638 QEEANSLSNIVH 649 (717)
Q Consensus 638 ~~~~~~~~~~~~ 649 (717)
|||.-+++-+.|
T Consensus 148 qEEf~s~~~~~~ 159 (169)
T 3k29_A 148 QDEMGQLLHQLH 159 (169)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 888877665544
No 374
>4d9s_A UVB-resistance protein UVR8; UV resistance, UV-B photoreceptor, tryptophan chromophores, homodimer, COP1, chromatin-binding protein; 1.70A {Arabidopsis thaliana} PDB: 4dnw_A 4dnu_A 4dnv_A
Probab=54.94 E-value=2.1e+02 Score=30.08 Aligned_cols=18 Identities=22% Similarity=0.145 Sum_probs=12.8
Q ss_pred cceEEEEE-CCEEEEEecc
Q 005043 148 RGHSLISW-GKKVLLVGGK 165 (717)
Q Consensus 148 ~~hs~v~~-~~~Iyv~GG~ 165 (717)
..|+++.. ++.||.+|--
T Consensus 130 ~~h~~alt~~G~v~~wG~n 148 (406)
T 4d9s_A 130 DSHCLAVTMEGEVQSWGRN 148 (406)
T ss_dssp SSEEEEEETTSCEEEEECC
T ss_pred hhheEEEcCCCcEEEeCCC
Confidence 35676665 6889999843
No 375
>4emc_A Monopolin complex subunit CSM1; RWD domain, kinetochore-binding, kinetoch replication-replication complex; 3.05A {Saccharomyces cerevisiae} PDB: 3n7n_A 3n4x_A
Probab=54.85 E-value=33 Score=32.66 Aligned_cols=62 Identities=19% Similarity=0.274 Sum_probs=46.6
Q ss_pred HHHHHHHHhcchhHHHHHHHhhHHHHHhhhhhHHhhHHHHHHHHHHHHHHHHH---HHHHHhhhh
Q 005043 574 KMAALIRKNGILEGQLAAALVNREAAEKNFSSVLKSRQEMEKKLADSLKEMEL---LKEKLAGLE 635 (717)
Q Consensus 574 ~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~---l~~~~~~~~ 635 (717)
-|+.|+..|..|..||.+...+.++..+.|+++=......+..++...+.++. |=|-|.|+.
T Consensus 21 LV~~L~~En~~L~~ql~~k~~ei~~L~~ql~sl~~~~~~~~~~~~~~~e~i~i~~DL~e~LTGl~ 85 (190)
T 4emc_A 21 LVANLVNENFVLSEKLDTKATEIKQLQKQIDSLNAQVKELKTQTSQQAENSEVIKDLYEYLCNVR 85 (190)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSEE
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHhhhHHHHHHHHccCcE
Confidence 46778889999999999999999999999988866655567666655555554 555666654
No 376
>2v66_B Nuclear distribution protein NUDE-like 1; structural protein, developmental protein, structural protei phosphorylation, transport, microtubule; 2.10A {Homo sapiens}
Probab=54.45 E-value=43 Score=29.18 Aligned_cols=59 Identities=22% Similarity=0.223 Sum_probs=40.9
Q ss_pred HHHHHHHHHHHHHhcchhHHHHHHHhhHHHHHhhhhhHHhhHHHHHHHHHHHHHHHHHHHHHH
Q 005043 569 QFYESKMAALIRKNGILEGQLAAALVNREAAEKNFSSVLKSRQEMEKKLADSLKEMELLKEKL 631 (717)
Q Consensus 569 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 631 (717)
..+..+|-.|=++|--||.+--++..+.+-.|.++..+++-.--||..|. |.+.|++++
T Consensus 52 ~~l~~~iReLEq~NDDLER~~R~t~~SLeD~E~k~n~aiErnalLE~El~----EKe~L~~~~ 110 (111)
T 2v66_B 52 EQLHKYVRELEQANDDLERAKRATIVSLEDFEQRLNQAIERNAFLESELD----EKESLLVSV 110 (111)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHTC
T ss_pred HHHHHHHHHHHHhchHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHhh
Confidence 35555666666677777777777888888888888877777766666554 566666553
No 377
>3sjl_D Methylamine dehydrogenase heavy chain; MAUG, C-heme, quinone cofactor, oxidoreductase-electron transport complex; HET: 0AF HEC MES; 1.63A {Paracoccus denitrificans} PDB: 2gc7_A* 2j55_H* 2j56_H* 2j57_G* 3l4m_D* 3l4o_D* 3orv_D* 3pxs_D* 3pxt_D* 3rlm_D* 2gc4_A* 3rn0_D* 3rn1_D* 3rmz_D* 3svw_D* 3sws_D* 3sxt_D* 3pxw_D* 3sle_D* 1mg2_A* ...
Probab=54.14 E-value=2.2e+02 Score=30.12 Aligned_cols=73 Identities=16% Similarity=0.157 Sum_probs=42.9
Q ss_pred CCEEEEEecC----CCCCccCeEEEEECCCCcEEEeecCCCCCCCCCcceEEEEEEeCCCcEEEEEcCCCCCCCCeEEEE
Q 005043 309 GTKWYIAGGG----SRKKRHAETLIFDILKGEWSVAITSPSSSVTSNKGFTLVLVQHKEKDFLVAFGGIKKEPSNQVEVL 384 (717)
Q Consensus 309 ~~~IyV~GG~----~~~~~~~dv~~yD~~t~~W~~l~~~p~~~~~~r~g~s~v~v~~~~~~~I~v~GG~~~~~~n~v~vy 384 (717)
++++||.-+. +....-+.|+++|+.+.+-..-.. .+..-+++. +..+++..||+.-+. .++|.+|
T Consensus 291 ~~~lyV~~~~~~~~~hk~~~~~V~viD~~t~kv~~~i~------vg~~~~~la-vs~D~~~~ly~tn~~----~~~VsVi 359 (386)
T 3sjl_D 291 LDRIYLLVDQRDEWRHKTASRFVVVLDAKTGERLAKFE------MGHEIDSIN-VSQDEKPLLYALSTG----DKTLYIH 359 (386)
T ss_dssp TTEEEEEEEECCTTCTTSCEEEEEEEETTTCCEEEEEE------EEEEECEEE-ECSSSSCEEEEEETT----TTEEEEE
T ss_pred CCeEEEEeccccccccCCCCCEEEEEECCCCeEEEEEE------CCCCcceEE-ECCCCCeEEEEEcCC----CCeEEEE
Confidence 6899997431 122334789999999976544321 111222333 333334467765332 3489999
Q ss_pred EccCCccc
Q 005043 385 SIEKNESS 392 (717)
Q Consensus 385 d~~~~eW~ 392 (717)
|..+.+-.
T Consensus 360 D~~t~k~~ 367 (386)
T 3sjl_D 360 DAESGEEL 367 (386)
T ss_dssp ETTTCCEE
T ss_pred ECCCCcEE
Confidence 99988743
No 378
>3ol1_A Vimentin; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, structural protein; 2.81A {Homo sapiens} PDB: 3uf1_A
Probab=53.57 E-value=52 Score=28.94 Aligned_cols=59 Identities=14% Similarity=0.211 Sum_probs=41.4
Q ss_pred HHHHhhhhhHHhhHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhcccccccccCCccchhhHHHHHHHHHHH
Q 005043 597 EAAEKNFSSVLKSRQEMEKKLADSLKEMELLKEKLAGLELAQEEANSLSNIVHSDNVRLEHDVAFLKAVLDDT 669 (717)
Q Consensus 597 ~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 669 (717)
+.+.+.+-.+...+-.++..+.++..+++.+|.|....- +. .-.+|.|+.-||-++|++
T Consensus 23 ~~LR~qid~~~~e~a~l~leldn~~~~~edfk~KyE~E~-~~-------------r~~~E~di~~lrK~lD~~ 81 (119)
T 3ol1_A 23 RELRRQVDQLTNDKARVEVERDNLAEDIMRLREKLQEEM-LQ-------------REEAENTLQSFRQDVDNA 81 (119)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HH-------------HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHH-HH-------------HHHHHHHHHHhhhcccHH
Confidence 345555666677777888888888888888888875422 11 123588999999999874
No 379
>3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha isoform; holoenzyme, PR55, WD repeat, hydrolase, iron, manganese binding, methylation, phosphoprotein, protein phosphatase; HET: 1ZN; 2.85A {Homo sapiens}
Probab=53.21 E-value=1.7e+02 Score=30.06 Aligned_cols=71 Identities=6% Similarity=0.103 Sum_probs=36.4
Q ss_pred CCEEEEEecCCCCCccCeEEEEECCC--CcEEEeecCCCCCCCCCcceEEEEEEeCCCcEEEEEcCCCCCCCCeEEEEEc
Q 005043 309 GTKWYIAGGGSRKKRHAETLIFDILK--GEWSVAITSPSSSVTSNKGFTLVLVQHKEKDFLVAFGGIKKEPSNQVEVLSI 386 (717)
Q Consensus 309 ~~~IyV~GG~~~~~~~~dv~~yD~~t--~~W~~l~~~p~~~~~~r~g~s~v~v~~~~~~~I~v~GG~~~~~~n~v~vyd~ 386 (717)
++++++.| .+ ..+.+||+.+ ..+..+...+...........++.+.. .+..+++.|+.++ .|.+||+
T Consensus 188 ~~~~l~s~-~d-----~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p-~~~~~l~s~~~dg----~i~iwd~ 256 (447)
T 3dw8_B 188 DYETYLSA-DD-----LRINLWHLEITDRSFNIVDIKPANMEELTEVITAAEFHP-NSCNTFVYSSSKG----TIRLCDM 256 (447)
T ss_dssp TSSEEEEE-CS-----SEEEEEETTEEEEEEEEEECCCSSGGGCCCCEEEEEECS-SCTTEEEEEETTS----CEEEEET
T ss_pred CCCEEEEe-CC-----CeEEEEECCCCCceeeeeecccccccccCcceEEEEECC-CCCcEEEEEeCCC----eEEEEEC
Confidence 56666665 33 3588999873 233333211111111122233444432 2225777777654 5888998
Q ss_pred cCCc
Q 005043 387 EKNE 390 (717)
Q Consensus 387 ~~~e 390 (717)
.+.+
T Consensus 257 ~~~~ 260 (447)
T 3dw8_B 257 RASA 260 (447)
T ss_dssp TTCS
T ss_pred cCCc
Confidence 7765
No 380
>3ghg_A Fibrinogen alpha chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_A* 2a45_G*
Probab=53.13 E-value=24 Score=38.78 Aligned_cols=114 Identities=13% Similarity=0.171 Sum_probs=59.6
Q ss_pred HHHHHHhcchhHHHHHHHhhHHHHH---hhhhhHHhhHHHHHHHHHHHHHHHH-HHHHHHhhhhhhhhhhcccccccccC
Q 005043 576 AALIRKNGILEGQLAAALVNREAAE---KNFSSVLKSRQEMEKKLADSLKEME-LLKEKLAGLELAQEEANSLSNIVHSD 651 (717)
Q Consensus 576 ~~~~~~~~~~~~~~~~~~~~~~~~e---~~~~~~~~~~~~~~~~~~~~~~~~~-~l~~~~~~~~~~~~~~~~~~~~~~~~ 651 (717)
.++..+-+.|..||+...++.-.++ +++...|+.+|.-...+.+...|+. +|++++..+++.= -|+|+|
T Consensus 60 rDltkrINELKnqLEdlsKnsKdseqy~k~~~E~Lr~rq~q~~dNdNtynE~S~ELRRrIqyLKekV--dnQlsn----- 132 (562)
T 3ghg_A 60 QDFTNRINKLKNSLFEYQKNNKDSHSLTTNIMEILRGDFSSANNRDNTYNRVSEDLRSRIEVLKRKV--IEKVQH----- 132 (562)
T ss_dssp HHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHTTSSHHHHHHHHHHHHHHTTHHHHHHHHHHHHHH--HHHHHH-----
T ss_pred CcHHHHHHHHHHHHHHHHhhchhHHHHHHHHHHHHHHHHHhhhccchhHHHHHHHHHHHHHHHHHHH--HHHHHH-----
Confidence 3344444445555555544444443 4666667777766666666666666 6777777665211 112222
Q ss_pred CccchhhHHHHHHHHHHHHHHhhhh-------ccchhhccccceeeEEEee----hhhhhhhh
Q 005043 652 NVRLEHDVAFLKAVLDDTQKELHST-------RGVLAGERARAFQLQVEVF----HLKQRLQS 703 (717)
Q Consensus 652 ~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~----~~~~~~~~ 703 (717)
++-|+++|+|.-.|++-. ++---|==+|++.-||++- .-||..|.
T Consensus 133 -------IrvLQsnLedq~~kIQRLEvDIdiqirsCKgsCsr~~~~~vd~~sY~~~QKQLeQv 188 (562)
T 3ghg_A 133 -------IQLLQKNVRAQLVDMKRLEVDIDIKIRSCRGSCSRALAREVDLKDYEDQQKQLEQV 188 (562)
T ss_dssp -------HHHHHHHHHHHHHHHHHHHHHHHHHHHHGGGTBSCCCCCCCCHHHHHHHHHHHHHH
T ss_pred -------HHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccchheeecchHHHHHHHHHHHHH
Confidence 345666665554444322 2222234467777676643 34555554
No 381
>3uux_B Mitochondrial division protein 1; tetratricopeptide repeat, mitochondrial fission, mitochondri cytoplasm, apoptosis; 3.90A {Saccharomyces cerevisiae S288C}
Probab=52.89 E-value=52 Score=32.47 Aligned_cols=86 Identities=19% Similarity=0.209 Sum_probs=69.5
Q ss_pred CCchHHHHHHHHHHHHHHHhcchhHHHHHHHhhHHHHHhhhhhHHhhHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhc
Q 005043 563 GPSSIYQFYESKMAALIRKNGILEGQLAAALVNREAAEKNFSSVLKSRQEMEKKLADSLKEMELLKEKLAGLELAQEEAN 642 (717)
Q Consensus 563 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 642 (717)
.+..|...|..+ .|..|-++....+|=.+=+.+.+-....+++.|++.+..-.+.+-+|||++|. +|
T Consensus 141 ~~e~I~~SYSl~---------~Lkk~~~~i~~~LelL~IRK~ma~sEI~EID~KI~~L~~mR~~vl~RLA~lEq--dE-- 207 (242)
T 3uux_B 141 ETAAISSSYSPS---------ALKSFSQTLVNSLEFLNIQKNSTLSEIRDIEVEVENLRQKKEKLLGKIANIEQ--NQ-- 207 (242)
T ss_dssp CCCGGGGSCCSH---------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HH--
T ss_pred CHHHhcccccHH---------HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh--hH--
Confidence 345555666543 46777788888888888888888899999999999999999999999999983 33
Q ss_pred ccccccccCCccchhhHHHHHHHHHHHHH
Q 005043 643 SLSNIVHSDNVRLEHDVAFLKAVLDDTQK 671 (717)
Q Consensus 643 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 671 (717)
+-||||+.-++-=+|+.|-
T Consensus 208 ----------l~LE~eL~~V~~Rief~qE 226 (242)
T 3uux_B 208 ----------LLLEDNLKQIDDRLDFLEE 226 (242)
T ss_dssp ----------HHHHHHHHHHHHHHHHHTT
T ss_pred ----------HHHHHHHHHHHHHHHHHHH
Confidence 4589999999988888875
No 382
>1mda_H Methylamine dehydrogenase (heavy subunit); electron transport; HET: TRQ; 2.50A {Paracoccus denitrificans} SCOP: b.69.2.1
Probab=52.62 E-value=2e+02 Score=30.19 Aligned_cols=277 Identities=11% Similarity=-0.063 Sum_probs=0.0
Q ss_pred CEEEEEcccCCCCCcccEEEEEcCCCceEEccccccCCCCCCCCCCCcccceEEEEECCEEEEEeccCCCC---CCceEE
Q 005043 99 NKMIVVGGESGNGLLDDVQVLNFDRFSWTAASSKLYLSPSSLPLKIPACRGHSLISWGKKVLLVGGKTDSG---SDRVSV 175 (717)
Q Consensus 99 ~~lyV~GG~~~~~~~~~v~~yd~~t~~W~~l~~~~~~~~~~~~~~~p~r~~hs~v~~~~~Iyv~GG~~~~~---~~~~~v 175 (717)
.++||.-...+.-.- .+.++|+.+++=...-+ ....+ +..+...+..+|+........ ...+.+
T Consensus 32 ~~~yV~~~~~~~~~d-~vsvID~~t~~v~~~i~----------vG~~P--~i~~spDg~~lyVan~~~~r~~~G~~~~~V 98 (368)
T 1mda_H 32 RRSHITLPAYFAGTT-ENWVSCAGCGVTLGHSL----------GAFLS--LAVAGHSGSDFALASTSFARSAKGKRTDYV 98 (368)
T ss_dssp TEEEEEECTTTCSSE-EEEEEETTTTEEEEEEE----------ECTTC--EEEECTTSSCEEEEEEEETTTTSSSEEEEE
T ss_pred CeEEEECCccCCccc-eEEEEECCCCeEEEEEe----------CCCCC--ceEECCCCCEEEEEcccccccccCCCCCEE
Q ss_pred EEEECCCCcEEEeeecCCCC--------CCceeeEEEEECCEEEEEccccCCCCCcCcEEE--EEcCCCceEeccCCC--
Q 005043 176 WTFDTETECWSVVEAKGDIP--------VARSGHTVVRASSVLILFGGEDGKRRKLNDLHM--FDLKSLTWLPLHCTG-- 243 (717)
Q Consensus 176 ~~yD~~t~~W~~l~~~g~~P--------~~R~~hs~~~~~~~Lyv~GG~~~~~~~~~~v~~--yD~~t~~W~~l~~~g-- 243 (717)
.+||+.+.+=..--+ .| ..-.+.+..-.+..+|+. +....+.+.+ +|+.+ -..++..+
T Consensus 99 sviD~~T~~vv~~I~---v~~~~~~~~g~~P~~ia~SpDGk~lyVa-----n~~~~~~v~V~~iD~~t--v~~i~v~~~~ 168 (368)
T 1mda_H 99 EVFDPVTFLPIADIE---LPDAPRFSVGPRVHIIGNCASSACLLFF-----LFGSSAAAGLSVPGASD--DQLTKSASCF 168 (368)
T ss_dssp EEECTTTCCEEEEEE---ETTSCSCCBSCCTTSEEECTTSSCEEEE-----ECSSSCEEEEEETTTEE--EEEEECSSCC
T ss_pred EEEECCCCCEEEEEE---CCCccccccCCCcceEEEcCCCCEEEEE-----ccCCCCeEEEEEEchhh--ceEEECCCce
Q ss_pred -CCCCCCcccEEEEECCcEEEEEcCCC----CCCCC---------------------------CeEEEEECCCCcEEEee
Q 005043 244 -TGPSPRSNHVAALYDDKNLLIFGGSS----KSKTL---------------------------NDLYSLDFETMIWTRIK 291 (717)
Q Consensus 244 -~~P~~R~~~aa~~~~~~~lyV~GG~~----~~~~~---------------------------ndv~~yd~~t~~W~~v~ 291 (717)
..|.++..+.+..-+++ +.++--.. ..... +.++.+|..+..=+.+.
T Consensus 169 ~~~p~g~~~~~~~~~dg~-~~~vd~~~~~~~~~~v~~~~t~~i~vg~~P~~~~~~~~~~~vs~~~V~viD~~~~~~~v~~ 247 (368)
T 1mda_H 169 HIHPGAAATHYLGSCPAS-LAASDLAAAPAAAGIVGAQCTGAQNCSSQAAQANYPGMLVWAVASSILQGDIPAAGATMKA 247 (368)
T ss_dssp CCEEEETTEEECCCCTTS-CEEEECCSSCCCCEECCCCSCTTSCBCSCCEEETTTTEEEECBSSCCEEEECCSSCCEEEC
T ss_pred EEccCCCeEEEEEcCCCC-EEEEECccccccCCeEEEEeeeeeeCCCCccccccCCEEEEEcCCEEEEEECCCCcceEEE
Q ss_pred ----------cCCCCCCCCcceEEEEECCEEEEEec---CCCCCccCeEEEEECCCCcEEEeecCCCCCCCCCcceEEEE
Q 005043 292 ----------IRGFHPSPRAGCCGVLCGTKWYIAGG---GSRKKRHAETLIFDILKGEWSVAITSPSSSVTSNKGFTLVL 358 (717)
Q Consensus 292 ----------~~g~~P~~R~~~sav~~~~~IyV~GG---~~~~~~~~dv~~yD~~t~~W~~l~~~p~~~~~~r~g~s~v~ 358 (717)
..+..|.+....+....++++||.-. ...-...+.+.++|+.+.+-.. ..+.+...+++.+
T Consensus 248 ~~~~~~~~~~~~~~~p~g~~~v~~s~dg~~lyV~~~~~~~~~~~~~~~~~ViD~~t~~vv~------~i~vg~~p~gi~~ 321 (368)
T 1mda_H 248 AIDGNESGRKADNFRSAGFQMVAKLKNTDGIMILTVEHSRSCLAAAENTSSVTASVGQTSG------PISNGHDSDAIIA 321 (368)
T ss_dssp CCCSSCTHHHHTTEEECSSSCEEEETTTTEEEEEEEECSSCTTSCEEEEEEEESSSCCEEE------CCEEEEEECEEEE
T ss_pred EEEeccccccccccccCcceeeEEcCCCCEEEEEeccccCcccccCCCEEEEECCCCeEEE------EEECCCCcceEEE
Q ss_pred EEeCCCcEEEEEcCCCCCCCCeEEEEEccCCcccCccccccCCCCCcEEEEeeCC
Q 005043 359 VQHKEKDFLVAFGGIKKEPSNQVEVLSIEKNESSMGRRSTPNAKGPGQLLFEKRS 413 (717)
Q Consensus 359 v~~~~~~~I~v~GG~~~~~~n~v~vyd~~~~eW~~~w~~~~~~~~p~~~~fgG~~ 413 (717)
..+ +..+|+..+.... .|-++|..+.+-.. ....+..|.-+.+....
T Consensus 322 s~D--g~~l~va~~~~~~---~VsVID~~t~kvv~---~I~vg~~P~~i~~~~~~ 368 (368)
T 1mda_H 322 AQD--GASDNYANSAGTE---VLDIYDAASDQDQS---SVELDKGPESLSVQNEA 368 (368)
T ss_dssp CCS--SSCEEEEEETTTT---EEEEEESSSCEEEE---ECCCCSCCCEEECCCCC
T ss_pred CCC--CCEEEEEccCCCC---eEEEEECCCCcEEE---EEECCCCCCEEEeecCC
No 383
>3ljm_A Coil Ser L9C; de novo design, three stranded coiled coil, APO, de novo Pro; 1.36A {Synthetic} PDB: 2jgo_A 1cos_A 3h5g_A 3h5f_A 3pbj_A 2x6p_C 1coi_A
Probab=52.43 E-value=18 Score=22.93 Aligned_cols=8 Identities=50% Similarity=0.530 Sum_probs=3.3
Q ss_pred HHHHhhhh
Q 005043 597 EAAEKNFS 604 (717)
Q Consensus 597 ~~~e~~~~ 604 (717)
|+.||+-+
T Consensus 4 ealekkca 11 (31)
T 3ljm_A 4 EALEKKCA 11 (31)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 34444433
No 384
>2oit_A Nucleoporin 214KDA; NH2 terminal domain of NUP214/CAN, X-RAY crystallography, beta-propeller, structure, mRNA export, NPC assembly, leukemia; HET: MES; 1.65A {Homo sapiens} PDB: 3fmo_A* 3fmp_A* 3fhc_A
Probab=52.10 E-value=2.4e+02 Score=29.86 Aligned_cols=61 Identities=13% Similarity=0.088 Sum_probs=33.0
Q ss_pred CEEEEEccccCCCCCcCcEEEEEcCCCceEeccCCCCCCCCCcccEEEEE-CCcEEEEEcCCCCCCCCCeEEEEECCC
Q 005043 208 SVLILFGGEDGKRRKLNDLHMFDLKSLTWLPLHCTGTGPSPRSNHVAALY-DDKNLLIFGGSSKSKTLNDLYSLDFET 284 (717)
Q Consensus 208 ~~Lyv~GG~~~~~~~~~~v~~yD~~t~~W~~l~~~g~~P~~R~~~aa~~~-~~~~lyV~GG~~~~~~~ndv~~yd~~t 284 (717)
+.+++.|+.++ .+.+||+.+..-.. . ..+....-.+++.. +++ .++.|+.++ .|.+||+..
T Consensus 162 ~~~las~s~Dg------~v~iwD~~~~~~~~-~---~~~~~~~v~~v~wspdg~-~lasgs~dg-----~v~iwd~~~ 223 (434)
T 2oit_A 162 PSMVAVCLADG------SIAVLQVTETVKVC-A---TLPSTVAVTSVCWSPKGK-QLAVGKQNG-----TVVQYLPTL 223 (434)
T ss_dssp TTEEEEEETTS------CEEEEEESSSEEEE-E---EECGGGCEEEEEECTTSS-CEEEEETTS-----CEEEECTTC
T ss_pred CCEEEEEECCC------eEEEEEcCCCccee-e---ccCCCCceeEEEEcCCCC-EEEEEcCCC-----cEEEEccCC
Confidence 56777777543 48888987763221 1 11111111223333 344 566677553 489999873
No 385
>2b9c_A Striated-muscle alpha tropomyosin; alpha-helix, coiled coil, alanine, axial stagger, radius, SIDE-chain packing, crystal packing; 2.30A {Rattus norvegicus} SCOP: h.1.5.1
Probab=51.96 E-value=21 Score=32.75 Aligned_cols=68 Identities=21% Similarity=0.219 Sum_probs=46.5
Q ss_pred HHHHHHHhcchhHHHHHHHhhHHHHHhhhhhHHhhHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhc
Q 005043 575 MAALIRKNGILEGQLAAALVNREAAEKNFSSVLKSRQEMEKKLADSLKEMELLKEKLAGLELAQEEAN 642 (717)
Q Consensus 575 ~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 642 (717)
|+.+=..-...+..|+.|++-.++|+|.....-+.|..+|.+-..-...++.|...|..+...-|++.
T Consensus 5 i~llEeeLer~eerl~~a~~kLeeaek~adE~eR~~k~lE~r~~~deEr~~~lE~qLkeak~~aeead 72 (147)
T 2b9c_A 5 IQLVEEELDRAQERLATALQKLEEAEKAADESERGMKVIESRAQKDEEKMEIQEIQLKEAKHIAEDAD 72 (147)
T ss_dssp ------CCGGGGTTTTHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333344456667788888899999988888888888888877777777777766666665555543
No 386
>3vp9_A General transcriptional corepressor TUP1; four helix bundle; 1.80A {Saccharomyces cerevisiae} PDB: 3vp8_A
Probab=50.90 E-value=13 Score=31.41 Aligned_cols=46 Identities=22% Similarity=0.386 Sum_probs=35.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhhhhhhhhcccccccccCCccchhhHHHHHHHHH
Q 005043 612 EMEKKLADSLKEMELLKEKLAGLELAQEEANSLSNIVHSDNVRLEHDVAFLKAVLD 667 (717)
Q Consensus 612 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 667 (717)
+.|.|++.-+.||+.++.+|-.+|.++-..-. .-|.|++=||+=|+
T Consensus 40 eyE~ki~~Qi~Emq~Ir~tvyeLE~~h~kmKq----------~YEeEI~rLr~eLe 85 (92)
T 3vp9_A 40 DYDFKMNQQLAEMQQIRNTVYERELTHRKMKD----------AYEEEIKHLKLGLE 85 (92)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHT
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHH
Confidence 79999999999999999999999999843322 24566776765443
No 387
>1dip_A Delta-sleep-inducing peptide immunoreactive peptide; structure, leucine zipper, PIG, acetylation; NMR {Sus scrofa} SCOP: h.1.12.1
Probab=50.33 E-value=4.7 Score=32.17 Aligned_cols=32 Identities=34% Similarity=0.495 Sum_probs=24.9
Q ss_pred HHHHHHHHHHHHhhhhhhhhhhcccccccccCCccchhhHHHHHHH
Q 005043 620 SLKEMELLKEKLAGLELAQEEANSLSNIVHSDNVRLEHDVAFLKAV 665 (717)
Q Consensus 620 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 665 (717)
..+|+|-|||+|+.++. - |-+||.|...||..
T Consensus 13 VREEVevLKe~I~EL~e----~----------~~qLE~EN~~Lk~~ 44 (78)
T 1dip_A 13 VREEVEILKEQIRELVE----K----------NSQLERENTLLKTL 44 (78)
T ss_dssp CTTSCHHHHHHHHHHHH----H----------HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH----H----------HHHHHHHHHHHHHh
Confidence 34788999999998873 2 34789999999864
No 388
>1sqj_A OXG-RCBH, oligoxyloglucan reducing-END-specific cellobiohydrolase; beta-propeller; 2.20A {Geotrichum SP} SCOP: b.69.13.1 b.69.13.1 PDB: 2ebs_A*
Probab=50.25 E-value=3.5e+02 Score=31.32 Aligned_cols=246 Identities=13% Similarity=0.133 Sum_probs=116.5
Q ss_pred CCCCeEEeeecCCCCC-----CcceeEEEEEC---CEEEEEcccCCCCCcccEEEEEcCCCceEEccccccCCCCCCCCC
Q 005043 72 NSENWMVLSIAGDKPI-----PRFNHAAAVIG---NKMIVVGGESGNGLLDDVQVLNFDRFSWTAASSKLYLSPSSLPLK 143 (717)
Q Consensus 72 ~s~~W~~l~~~g~~P~-----~R~~haav~~~---~~lyV~GG~~~~~~~~~v~~yd~~t~~W~~l~~~~~~~~~~~~~~ 143 (717)
....|..+. ..+. .+.-++.++.. +.+|+..|.........+++=+=...+|+.+..... . +..
T Consensus 45 gG~tW~~~~---~~~~~~~~~~~~i~~ia~dp~~~~~i~~~~g~~~~~~~~~v~~S~DgG~TW~~~~~~~~-~----~~~ 116 (789)
T 1sqj_A 45 GTSKWIPLN---DFIEAQDMNIMGTESIALDPNNPDRLYLAQGRYVGDEWAAFYVSEDRGQSFTIYESPFP-M----GAN 116 (789)
T ss_dssp TTTEEEESC---TTCCGGGGGGCSEEEEEEETTEEEEEEEEECSCTTSSCCEEEEESSTTSEEEEEECSSC-C----CTT
T ss_pred CCCCeeECc---cCCCcccccCCceeEEEECCCCCCEEEEEeCccCCCcccEEEEECCCCCcceeccCCcc-c----Ccc
Confidence 457799875 2221 22334444432 568887764321111344443334469999854100 0 000
Q ss_pred CCcc-cceEEEEE---CCEEEEEeccCCCCCCceEEEEEECCCCcEEEeeecCCCCC-CceeeEEEEE---CCEEEEEcc
Q 005043 144 IPAC-RGHSLISW---GKKVLLVGGKTDSGSDRVSVWTFDTETECWSVVEAKGDIPV-ARSGHTVVRA---SSVLILFGG 215 (717)
Q Consensus 144 ~p~r-~~hs~v~~---~~~Iyv~GG~~~~~~~~~~v~~yD~~t~~W~~l~~~g~~P~-~R~~hs~~~~---~~~Lyv~GG 215 (717)
.+.+ ..+.+++. .+.+|+ |... ..+|+-+-.-.+|+.+.....+.. ....+.+++. .+.||+...
T Consensus 117 ~~~~~~~~~iav~p~~~~~v~~-g~~~------~gl~~S~DgG~TW~~~~~~~~~~~~~~~~~~i~~~p~~~~~~~~~~~ 189 (789)
T 1sqj_A 117 DMGRNNGERLAVNPFNSNEVWM-GTRT------EGIWKSSDRAKTWTNVTSIPDAFTNGIGYTSVIFDPERNGTIYASAT 189 (789)
T ss_dssp STTTTSCCCEEEETTEEEEEEE-ECSS------SCEEEESSTTSSCEEETTSCCCCSTTTCEEEEEECTTSTTCEEEEES
T ss_pred CCCccceeEEEEcCCCCCEEEE-Eecc------CCEEEECCCCcccCCCccCccccCCCCCeEEEEECCCCCCEEEEEEc
Confidence 1222 22344444 245665 3321 236665555678998863111101 1122233332 246777543
Q ss_pred ccCCCCCcCcEEEEEcCCCceEeccCCCCCCCCC----------------cccEEEEEC-CcEEEEEcCCCC---CCCCC
Q 005043 216 EDGKRRKLNDLHMFDLKSLTWLPLHCTGTGPSPR----------------SNHVAALYD-DKNLLIFGGSSK---SKTLN 275 (717)
Q Consensus 216 ~~~~~~~~~~v~~yD~~t~~W~~l~~~g~~P~~R----------------~~~aa~~~~-~~~lyV~GG~~~---~~~~n 275 (717)
.. ..+++=.-.-.+|+.+. .+|... ..|.+++.. ...||+..+... .....
T Consensus 190 ~~------~~v~~S~DgG~TW~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~l~~~~~~~~~p~~g~~g 260 (789)
T 1sqj_A 190 AP------QGMYVTHDGGVSWEPVA---GQPSSWLNRTTGAFPDKKPASIAPQPMKVALTPNFLYVTYADYPGPWGVTFG 260 (789)
T ss_dssp ST------TCEEEESSTTSSCEECT---TCCCSCCHHHHHTSTTCCCSSSSCEEEEEEECSSEEEEEEESSCSSSCCCCC
T ss_pred CC------CeEEEEcCCCcCcccCC---CCcCccccccccccCcccccccccceeEEcCCCCeEEEEEecCCCCCCCCCc
Confidence 11 23443332355799886 223211 114444432 444777632110 11234
Q ss_pred eEEEEECCCCcEEEeecCCCC--CCC----Cc---ce-EEEEE---CCEEEEEecCCCC-CccCeEEEEECCCCcEEEee
Q 005043 276 DLYSLDFETMIWTRIKIRGFH--PSP----RA---GC-CGVLC---GTKWYIAGGGSRK-KRHAETLIFDILKGEWSVAI 341 (717)
Q Consensus 276 dv~~yd~~t~~W~~v~~~g~~--P~~----R~---~~-sav~~---~~~IyV~GG~~~~-~~~~dv~~yD~~t~~W~~l~ 341 (717)
.+++.+-...+|+.+...+.. |.+ .. +. .+++. .+.||+.++.... .....+++-+-...+|+.+.
T Consensus 261 ~l~~S~DgG~tW~~~~~~~~~~~p~~~~~~~~~~~g~~~lav~p~~~~~v~~~~~~~~~~~~~~~l~~S~DgG~tW~~~~ 340 (789)
T 1sqj_A 261 EVWRQNRTSGAWDDITPRVGNSSPAPYNNQTFPAGGFCGLSVDATNPNRLVVITLDRDPGPALDSIYLSTDAGATWKDVT 340 (789)
T ss_dssp CEEEEETTTCCEEECCCCTTTEESCCCSSCCSCCCEEEEEEEETTEEEEEEEEEECCCSCSSCCCEEEESSTTSSEEEHH
T ss_pred eEEEEeCCCCceEECcCCCCccccccccccccccCceEEEEECCCCCCEEEEEEeccCCCcccccEEEecCCCCCceeCc
Confidence 699999999999998753110 111 12 32 33332 2567877753211 01134666655678999886
No 389
>2xzr_A Immunoglobulin-binding protein EIBD; cell adhesion, trimeric autotransporter adhesin, TAA; 2.80A {Enterobacteria phage p-eibd}
Probab=50.08 E-value=99 Score=25.92 Aligned_cols=73 Identities=11% Similarity=0.262 Sum_probs=36.7
Q ss_pred HHHHHHHhhHHHHHh----hhhhHHhhHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhcccccccccCCccchhhHHHH
Q 005043 587 GQLAAALVNREAAEK----NFSSVLKSRQEMEKKLADSLKEMELLKEKLAGLELAQEEANSLSNIVHSDNVRLEHDVAFL 662 (717)
Q Consensus 587 ~~~~~~~~~~~~~e~----~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 662 (717)
|-++.+.++-.||=. .++.-++.-|+-+.+|-+-.+ .++|....+..+.-++..| =|-|--||.|||-|
T Consensus 30 g~~d~ri~~NtqaI~~NS~aiaanTr~lQqh~aRlnsqQr---QI~ENhkEMKq~aaqsaaL----lsk~yh~ene~ar~ 102 (114)
T 2xzr_A 30 GAIDGRVTRNTQSIEKNSKAIAANTRTLQQHSARLDSQQR---QINENHKEMKQIEDKIEEI----LSKIYHIENEIARI 102 (114)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHH
T ss_pred hhhhHHHHhhHHHHHhchHHHHHhHHHHHHHHHHHHhHHH---HHHHHHHHHHHHHHHHHHH----HHHhhHHHHHHHHH
Confidence 344455555444433 233335555665555544332 2344443344333333221 23455689999999
Q ss_pred HHHH
Q 005043 663 KAVL 666 (717)
Q Consensus 663 ~~~~ 666 (717)
|-.+
T Consensus 103 kkl~ 106 (114)
T 2xzr_A 103 KKLI 106 (114)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 9765
No 390
>2eqb_B RAB guanine nucleotide exchange factor SEC2; coiled coil, endocytosis/exocytosis complex; 2.70A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=49.92 E-value=49 Score=28.07 Aligned_cols=84 Identities=20% Similarity=0.175 Sum_probs=49.1
Q ss_pred HHHHhcchhHHHHHHHhhHHHHHhhhhhHHhhHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhcccccccccCC---cc
Q 005043 578 LIRKNGILEGQLAAALVNREAAEKNFSSVLKSRQEMEKKLADSLKEMELLKEKLAGLELAQEEANSLSNIVHSDN---VR 654 (717)
Q Consensus 578 ~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~---~~ 654 (717)
+-.+...|+.+++..-..+..+-..|..--.-|.++|+.+..+..|+|.|---|= ||||+ ||...+ ..
T Consensus 10 lre~l~~le~~~~~~~~e~~~L~~~l~eE~~~R~~aE~~~~~ie~ElEeLTasLF------eEAN~---MVa~ar~e~~~ 80 (97)
T 2eqb_B 10 LKEDYNTLKRELSDRDDEVKRLREDIAKENELRTKAEEEADKLNKEVEDLTASLF------DEANN---MVADARKEKYA 80 (97)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHH---HHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHH---HHHHHHHHHHH
Confidence 3334445666666666666666666666677777777777777777777643221 44554 444431 12
Q ss_pred chhhHHHHHHHHHHHH
Q 005043 655 LEHDVAFLKAVLDDTQ 670 (717)
Q Consensus 655 ~~~~~~~~~~~~~~~~ 670 (717)
+|.-+.=|++=|.|++
T Consensus 81 ~e~kn~~L~~qL~d~d 96 (97)
T 2eqb_B 81 IEILNKRLTEQLREKD 96 (97)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhcc
Confidence 3444556666665543
No 391
>4hvt_A Ritya.17583.B, post-proline cleaving enzyme; ssgcid, structural genomics, S structural genomics center for infectious disease; 1.70A {Rickettsia typhi}
Probab=49.88 E-value=3.5e+02 Score=31.12 Aligned_cols=104 Identities=14% Similarity=0.163 Sum_probs=59.4
Q ss_pred CcCcEEEEEcCC--CceEeccCCCCCCCCCcccEEEEECCcEEEEEcCCCC-----CCCCCeEEEEECCC--------Cc
Q 005043 222 KLNDLHMFDLKS--LTWLPLHCTGTGPSPRSNHVAALYDDKNLLIFGGSSK-----SKTLNDLYSLDFET--------MI 286 (717)
Q Consensus 222 ~~~~v~~yD~~t--~~W~~l~~~g~~P~~R~~~aa~~~~~~~lyV~GG~~~-----~~~~ndv~~yd~~t--------~~ 286 (717)
..+.+|..|... ..|.++. .|. ........++. +|+....+. ......+..+|+.+ ..
T Consensus 267 ~~~~~~~~~~~~~~~~~~~l~----~~~--~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 339 (711)
T 4hvt_A 267 YNYDNYILDTKYKNLKLQKIN----MPS--DATLQGSFKEY-VFWLLRSDWKFKSHNIKAGSLVALHFTDLLKTESDKTS 339 (711)
T ss_dssp SCEEEEEEECSSSSCEEEECC----SCT--TCEEEEEETTE-EEEECSSCEEETTEEECTTCEEEEEGGGGGSCGGGCTT
T ss_pred CceeEEEEcCCCCCCcceEee----cCC--cceEeeeECCE-EEEEECcccccccccCCCCeEEEEECCccccccccccc
Confidence 347788888753 6687773 333 22223445665 788664431 12345789999765 46
Q ss_pred EEEeecCCCCCCCCcc-eEEEEECCEEEEEecCCCCCccCeEEEEECCCCcEEE
Q 005043 287 WTRIKIRGFHPSPRAG-CCGVLCGTKWYIAGGGSRKKRHAETLIFDILKGEWSV 339 (717)
Q Consensus 287 W~~v~~~g~~P~~R~~-~sav~~~~~IyV~GG~~~~~~~~dv~~yD~~t~~W~~ 339 (717)
|+.+-. |..... ......++.+|+..-.++ ...++++|+.+..|..
T Consensus 340 ~~~~~~----~~~~~~l~~~~~~~~~l~~~~~~~~---~~~l~~~~~~~g~~~~ 386 (711)
T 4hvt_A 340 LKILFT----PTANEVFNFISTTKDRVFLATYDNV---VAKVVTFTLENEQWTK 386 (711)
T ss_dssp CEEEEC----CCTTEEEEEEEECSSCEEEEEEETT---EEEEEEECEETTEECC
T ss_pred ceEEEC----CCCCCeEEEEEEECCEEEEEEEECC---EEEEEEEECCCCceEE
Confidence 987432 222222 233444677776653332 2468889988887743
No 392
>3lss_A Seryl-tRNA synthetase; aminoacyl-tRNA synthetase, tRNA ligase, AARS, serrs, translation, ATP-binding, nucleotide-binding, structural genomics; HET: ATP; 1.95A {Trypanosoma brucei} PDB: 3lsq_A*
Probab=49.64 E-value=44 Score=36.86 Aligned_cols=13 Identities=23% Similarity=0.363 Sum_probs=10.4
Q ss_pred hhhcccccccccC
Q 005043 639 EEANSLSNIVHSD 651 (717)
Q Consensus 639 ~~~~~~~~~~~~~ 651 (717)
+..-.|-|++|.+
T Consensus 136 ~~l~~iPN~~~~~ 148 (484)
T 3lss_A 136 KLMLNVGNILHES 148 (484)
T ss_dssp HHHTTCCCCCCTT
T ss_pred HHHHhCCCCCCcc
Confidence 5567799999976
No 393
>2i1j_A Moesin; FERM, coiled-coil, C-ermad, ERM, radixin, ezrin, MER actin binding, masking, regulation, SELF-inhibition, cell A membrane protein; 2.10A {Spodoptera frugiperda} PDB: 2i1k_A 1e5w_A
Probab=49.60 E-value=8.2 Score=43.73 Aligned_cols=45 Identities=22% Similarity=0.178 Sum_probs=0.0
Q ss_pred chhHHHHHHHhhHHHHHhhhhhHHhhHHHHHHHHHHHHHHHHHHH
Q 005043 584 ILEGQLAAALVNREAAEKNFSSVLKSRQEMEKKLADSLKEMELLK 628 (717)
Q Consensus 584 ~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 628 (717)
.|+.++.-|..+++..|++-+.+-+.++.|+..-....+|.+.|.
T Consensus 367 ~l~e~~~~~~~e~~~l~~~~~~~e~~~~~l~~~~~~~~~e~~~l~ 411 (575)
T 2i1j_A 367 RLEEQLRQLQAAKEELEQRQNELQAMMQRLEETKNMEAAERQKLE 411 (575)
T ss_dssp ---------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Confidence 455555555555555555555554444444444434444443333
No 394
>3sre_A PON1, serum paraoxonase; directed evolution, 6-blades-propeller fold, hydrolase; HET: LMT; 1.99A {Artificial gene} PDB: 1v04_A* 3srg_A*
Probab=49.50 E-value=2.5e+02 Score=29.33 Aligned_cols=148 Identities=11% Similarity=0.049 Sum_probs=75.5
Q ss_pred ceEEEEEECC--CCcEEEeeecCC-CC-CCceeeEEEEEC---C--EEEEEccccCCCCCcCcEEEEEcCCCceEeccCC
Q 005043 172 RVSVWTFDTE--TECWSVVEAKGD-IP-VARSGHTVVRAS---S--VLILFGGEDGKRRKLNDLHMFDLKSLTWLPLHCT 242 (717)
Q Consensus 172 ~~~v~~yD~~--t~~W~~l~~~g~-~P-~~R~~hs~~~~~---~--~Lyv~GG~~~~~~~~~~v~~yD~~t~~W~~l~~~ 242 (717)
...+++||+. +.+-..+...+. .. ..-.-|.+.... + +|||+--... ...-.++.+|+.+.....+...
T Consensus 82 ~G~I~~~d~~~~~~~~~~l~~~g~~~~~~~f~PhGi~~~~d~dg~~~L~Vvnh~~~--~s~ielf~~d~~~~~~~~~~~~ 159 (355)
T 3sre_A 82 SGKILLMDLNEKEPAVSELEIIGNTLDISSFNPHGISTFIDDDNTVYLLVVNHPGS--SSTVEVFKFQEEEKSLLHLKTI 159 (355)
T ss_dssp CCEEEEEETTSSSCCEEECEEECSSCCGGGCCEEEEEEEECTTCCEEEEEEECSTT--CCEEEEEEEETTTTEEEEEEEE
T ss_pred CCeEEEEecCCCCCceEEEEccCCCCCcCceeeeeeEEEECCCCcEEEEEEECCCC--CCeEEEEEEECCCCEEEEEecc
Confidence 4469999987 345666665442 11 223445555532 3 5777743211 1234567777776665555322
Q ss_pred CCCCCCCcccEEEEECCcEEEEEcCC--CC----------CCCCCeEEEEECCCCcEEEeecCCCCCCCCcceEEEEE--
Q 005043 243 GTGPSPRSNHVAALYDDKNLLIFGGS--SK----------SKTLNDLYSLDFETMIWTRIKIRGFHPSPRAGCCGVLC-- 308 (717)
Q Consensus 243 g~~P~~R~~~aa~~~~~~~lyV~GG~--~~----------~~~~ndv~~yd~~t~~W~~v~~~g~~P~~R~~~sav~~-- 308 (717)
...+..+..-.++.-++. +|+-+.. .. ......+++||+. +.+.+... .... -+.+.-
T Consensus 160 ~g~~~~~pND~~v~~~G~-fyvt~~~~ftd~~~~~~e~~~~~~~g~vyr~d~~--~~~~~~~~----l~~p-NGia~spD 231 (355)
T 3sre_A 160 RHKLLPSVNDIVAVGPEH-FYATNDHYFIDPYLKSWEMHLGLAWSFVTYYSPN--DVRVVAEG----FDFA-NGINISPD 231 (355)
T ss_dssp CCTTCSSEEEEEEEETTE-EEEEESCSCSSHHHHHHHHHTTCCCEEEEEECTT--CCEEEEEE----ESSE-EEEEECTT
T ss_pred ccCCCCCCceEEEeCCCC-EEecCCcEeCCcccccchhhccCCccEEEEEECC--eEEEeecC----Cccc-CcceECCC
Confidence 223333333333433444 7775432 11 1234579999984 44444321 1111 122222
Q ss_pred CCEEEEEecCCCCCccCeEEEEECCC
Q 005043 309 GTKWYIAGGGSRKKRHAETLIFDILK 334 (717)
Q Consensus 309 ~~~IyV~GG~~~~~~~~dv~~yD~~t 334 (717)
+..+|+.-... ..+++|+...
T Consensus 232 g~~lYvadt~~-----~~I~~~~~~~ 252 (355)
T 3sre_A 232 GKYVYIAELLA-----HKIHVYEKHA 252 (355)
T ss_dssp SSEEEEEEGGG-----TEEEEEEECT
T ss_pred CCEEEEEeCCC-----CeEEEEEECC
Confidence 35788876533 4699999764
No 395
>3iv1_A Tumor susceptibility gene 101 protein; coiled_COIL, tumorigenesis, CELL_cycle regulation, alternative splicing, cell cycle, cell division; HET: MSE; 2.50A {Homo sapiens}
Probab=49.30 E-value=71 Score=25.98 Aligned_cols=59 Identities=15% Similarity=0.196 Sum_probs=49.9
Q ss_pred chhHHHHHHHhhHHHHHhhhhhHHhhHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhc
Q 005043 584 ILEGQLAAALVNREAAEKNFSSVLKSRQEMEKKLADSLKEMELLKEKLAGLELAQEEAN 642 (717)
Q Consensus 584 ~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 642 (717)
.|...+..+.|+.+..-+--...-+.+|+++..+..+.+|...|..-++-+....+|.-
T Consensus 15 rl~E~~~q~qaEl~sLrrT~~EL~~G~~KL~~mi~~l~~E~~~l~~ni~~lk~K~~EL~ 73 (78)
T 3iv1_A 15 RMKEEMDRAQAELNALKRTEEDLKKGHQKLEEMVTRLDQEVAEVDKNIELLKKKDEELS 73 (78)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46677888888888888888888899999999999999999999999988887776643
No 396
>2b5u_A Colicin E3; high resolution colicin E3, ribosome inactivation, ribosome inhibitor, hydrolase; HET: CIT; 2.30A {Escherichia coli} SCOP: b.101.1.1 b.110.1.1 h.4.9.1 PDB: 1jch_A* 1ujw_B* 2ysu_B 1e44_B 2xfz_Y* 2xg1_Y*
Probab=49.26 E-value=1.4e+02 Score=32.46 Aligned_cols=40 Identities=13% Similarity=0.007 Sum_probs=28.2
Q ss_pred HHHHHHHHHHHHHh---cchhHHHHHHHhhHHHHHhhhhhHHh
Q 005043 569 QFYESKMAALIRKN---GILEGQLAAALVNREAAEKNFSSVLK 608 (717)
Q Consensus 569 ~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~e~~~~~~~~ 608 (717)
|..|.|-++.-..+ +.+|.+++.|.+++++|||.++..-+
T Consensus 300 qeee~r~~qew~~~hp~~~Aer~~e~a~ael~~a~k~~a~~~e 342 (551)
T 2b5u_A 300 QDEENRRQQEWDATHPVEAAERNYERARAELNQANEDVARNQE 342 (551)
T ss_dssp HHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhcCcHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45555555443332 57889999999999999998775433
No 397
>2no2_A HIP-I, huntingtin-interacting protein 1; clathrin light chain binding, HIP1 coiled-coil domain, endocytosis, clathrin SELF-assembly, cell adhesion; 2.80A {Homo sapiens}
Probab=49.21 E-value=41 Score=29.14 Aligned_cols=13 Identities=23% Similarity=0.238 Sum_probs=6.0
Q ss_pred HHHHHHHHHHHhh
Q 005043 662 LKAVLDDTQKELH 674 (717)
Q Consensus 662 ~~~~~~~~~~~~~ 674 (717)
|.+.++..++|..
T Consensus 87 l~~~~~~l~~Ek~ 99 (107)
T 2no2_A 87 WAAEFAELEKERD 99 (107)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 4444544444433
No 398
>3bbp_D GRIP and coiled-coil domain-containing protein 2; golgi complex, GRIP domain, RAB GTPase, ARL GTPase, golgin, RAB effector, clAsp protein; HET: GTP; 3.00A {Homo sapiens}
Probab=49.08 E-value=11 Score=29.82 Aligned_cols=29 Identities=34% Similarity=0.401 Sum_probs=21.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhhhhhhh
Q 005043 612 EMEKKLADSLKEMELLKEKLAGLELAQEE 640 (717)
Q Consensus 612 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 640 (717)
+.|...|...+...+||+.|--+|+.||-
T Consensus 40 EsEatnarL~eq~~lLK~EIRRlERnqeR 68 (71)
T 3bbp_D 40 ETEATNAILMEQIKLLKSEIRRLERNQER 68 (71)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTC--
T ss_pred hccchHHHHHHHHHHHHHHHHHHHhhHhh
Confidence 34555666777888999999999999874
No 399
>2ke4_A CDC42-interacting protein 4; CIP4, TC10, coiled-coil, alternative splicing, cell membrane, coiled coil, cytoplasm, cytoskeleton, endocytosis; NMR {Homo sapiens}
Probab=48.65 E-value=35 Score=29.06 Aligned_cols=64 Identities=23% Similarity=0.241 Sum_probs=43.9
Q ss_pred HHHHHHHHHHhcchhHHHHHHHhhHHHHHhhhhhHHhhH-----HHHHHHHHHHHHHHHHHHHHHhhhh
Q 005043 572 ESKMAALIRKNGILEGQLAAALVNREAAEKNFSSVLKSR-----QEMEKKLADSLKEMELLKEKLAGLE 635 (717)
Q Consensus 572 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~-----~~~~~~~~~~~~~~~~l~~~~~~~~ 635 (717)
|.+...|.++-..|+.+++-+..+||.++|=...-.++- ..++.+|+++...++.|+.-+.-.+
T Consensus 14 eqRkkkL~~Ki~el~~ei~ke~~~regl~Km~~vY~~nP~~GD~~s~~~~L~e~~~kid~L~~el~K~q 82 (98)
T 2ke4_A 14 EQQRKRLQQQLEERSRELQKEVDQREALKKMKDVYEKTPQMGDPASLEPQIAETLSNIERLKLEVQKYE 82 (98)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHCGGGCCGGGSHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455666777777899999999999999999443322221 1237778888777777776654433
No 400
>2wt7_B Transcription factor MAFB; transcription, transcription regulation, nucleus, activator, repressor, DNA-binding, phosphoprotein, differentiation; 2.30A {Mus musculus} PDB: 2wty_A* 1k1v_A
Probab=48.36 E-value=87 Score=26.20 Aligned_cols=61 Identities=15% Similarity=0.222 Sum_probs=44.1
Q ss_pred HHHHHHHHhcchhHHHHHH------HhhHHHHHhhhhhHHhhHHHHHHHHHHHHHHHHHHHHHHhhh
Q 005043 574 KMAALIRKNGILEGQLAAA------LVNREAAEKNFSSVLKSRQEMEKKLADSLKEMELLKEKLAGL 634 (717)
Q Consensus 574 ~~~~~~~~~~~~~~~~~~~------~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 634 (717)
.+..+..+--.|.--..|+ +..++..|.........++.|...++.+.+|+..+|.|+.++
T Consensus 22 ev~~lKq~RRtlKNRgyAq~CR~Kr~~q~~~LE~e~~~L~~e~~~L~~e~~~~~~e~d~~k~k~~~L 88 (90)
T 2wt7_B 22 EVIRLKQKRRTLKNRGYAQSCRYKRVQQKHHLENEKTQLIQQVEQLKQEVSRLARERDAYKVKSEKL 88 (90)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3444444444555555554 456677888888888888899999999999999999998765
No 401
>3ibp_A Chromosome partition protein MUKB; structural maintenance of chromosomes, SMC, condensin, chromosome segregation, hinge, dimerization domain; 3.10A {Escherichia coli}
Probab=47.64 E-value=29 Score=35.43 Aligned_cols=87 Identities=16% Similarity=0.232 Sum_probs=65.6
Q ss_pred HHHHHhhhhhHHhhHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhcccccccccCCccch--hhH-HHHHHHHHHHHHH
Q 005043 596 REAAEKNFSSVLKSRQEMEKKLADSLKEMELLKEKLAGLELAQEEANSLSNIVHSDNVRLE--HDV-AFLKAVLDDTQKE 672 (717)
Q Consensus 596 ~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~-~~~~~~~~~~~~~ 672 (717)
.|.+|..++.+.+.|-+|..++..+..++..|+.+.-.=-.||+-.+-|+-.. ...|| .|| +++-++|+.- +|
T Consensus 5 ~~~l~~~~~~~~e~r~~lr~~~eql~~~i~~L~~~ap~W~~aq~al~rL~eq~---g~~~~ds~~v~~~mq~~Le~E-re 80 (302)
T 3ibp_A 5 IASLSDSVSNAREERMALRQEQEQLQSRIQSLMQRAPVWLAAQNSLNQLSEQC---GEEFTSSQDVTEYLQQLLERE-RE 80 (302)
T ss_dssp ------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT---TCCCSSHHHHHHHHHHHHHHH-HH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHChHHHHHHHHHHHHHHHh---CCcCCCHHHHHHHHHHHHHHH-HH
Confidence 45667778888889999999999999999999998888888887777776543 23455 467 8888888766 89
Q ss_pred hhhhccchhhcccc
Q 005043 673 LHSTRGVLAGERAR 686 (717)
Q Consensus 673 ~~~~~~~~~~~~~~ 686 (717)
+-.+|..+|.++.+
T Consensus 81 ~~~~Rd~~a~~k~~ 94 (302)
T 3ibp_A 81 AIVERDEVGARKNA 94 (302)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 99999999988654
No 402
>3ljm_A Coil Ser L9C; de novo design, three stranded coiled coil, APO, de novo Pro; 1.36A {Synthetic} PDB: 2jgo_A 1cos_A 3h5g_A 3h5f_A 3pbj_A 2x6p_C 1coi_A
Probab=47.42 E-value=28 Score=22.11 Aligned_cols=24 Identities=38% Similarity=0.484 Sum_probs=13.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhh
Q 005043 612 EMEKKLADSLKEMELLKEKLAGLE 635 (717)
Q Consensus 612 ~~~~~~~~~~~~~~~l~~~~~~~~ 635 (717)
-+|+|-|........|..||.++|
T Consensus 5 alekkcaalesklqalekkleale 28 (31)
T 3ljm_A 5 ALEKKCAALESKLQALEKKLEALE 28 (31)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455555555555555555555554
No 403
>4dk0_A Putative MACA; alpha-hairpin, lipoyl, beta-barrel, periplasmic protein, MEM protein; 3.50A {Aggregatibacter actinomycetemcomitans} PDB: 4dk1_A
Probab=47.40 E-value=44 Score=34.89 Aligned_cols=35 Identities=14% Similarity=0.079 Sum_probs=20.3
Q ss_pred HHHHHHHHHHHhcchhHHHHHHHhhHHHHHhhhhh
Q 005043 571 YESKMAALIRKNGILEGQLAAALVNREAAEKNFSS 605 (717)
Q Consensus 571 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~ 605 (717)
++.+++.+-..-..++.||+.|.+..+.|++++..
T Consensus 68 ~~~~l~~~~a~l~~~~a~l~~a~~~~~~a~~~~~r 102 (369)
T 4dk0_A 68 QINTLNTRKAALASYQAQLVARKTAYDVALSNYQR 102 (369)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444444444445666777777776666665543
No 404
>1jof_A Carboxy-CIS,CIS-muconate cyclase; beta-propeller, homotetramer, seMet-protein, isomerase; HET: PIN; 2.50A {Neurospora crassa} SCOP: b.69.10.1
Probab=46.54 E-value=2.5e+02 Score=28.45 Aligned_cols=67 Identities=16% Similarity=0.178 Sum_probs=32.9
Q ss_pred EEEeccCCCCCCceEEEEEECCCCcEEEeeecCCCCCCceeeEEEEE-CC-EEEEEccccCCCCCcCcEEEEEcC-CCce
Q 005043 160 LLVGGKTDSGSDRVSVWTFDTETECWSVVEAKGDIPVARSGHTVVRA-SS-VLILFGGEDGKRRKLNDLHMFDLK-SLTW 236 (717)
Q Consensus 160 yv~GG~~~~~~~~~~v~~yD~~t~~W~~l~~~g~~P~~R~~hs~~~~-~~-~Lyv~GG~~~~~~~~~~v~~yD~~-t~~W 236 (717)
+++|++...+ .-.++.+|+.+++.+.+.... .+.....+.++.. ++ .||+.. .+ .+.+||+. +.+.
T Consensus 5 ~~vg~~~~~~--~i~~~~~d~~~g~l~~~~~~~-~~~~~~~~~~a~spdg~~l~~~~-~~-------~v~~~~~~~~g~~ 73 (365)
T 1jof_A 5 LMIGTWTPPG--AIFTVQFDDEKLTCKLIKRTE-IPQDEPISWMTFDHERKNIYGAA-MK-------KWSSFAVKSPTEI 73 (365)
T ss_dssp EEEEESSSSC--EEEEEEEETTTTEEEEEEEEE-CCTTCCCSEEEECTTSSEEEEEE-BT-------EEEEEEEEETTEE
T ss_pred EEEEEccCCC--cEEEEEEECCCCCEEEeeEEc-cCCCCCCcEEEECCCCCEEEEEc-cc-------eEEEEEECCCCCE
Confidence 3456664321 123556678888887664310 1111112233333 34 466553 21 68888876 6654
Q ss_pred E
Q 005043 237 L 237 (717)
Q Consensus 237 ~ 237 (717)
.
T Consensus 74 ~ 74 (365)
T 1jof_A 74 V 74 (365)
T ss_dssp E
T ss_pred E
Confidence 4
No 405
>2w83_C C-JUN-amino-terminal kinase-interacting protein 4; golgi apparatus, protein transport, ER-golgi transport, ARF, GTPase, effector, myristate; HET: GTP; 1.93A {Homo sapiens}
Probab=46.48 E-value=38 Score=27.29 Aligned_cols=54 Identities=20% Similarity=0.315 Sum_probs=34.3
Q ss_pred HHHHHHHHHHHHHhcchhHHHHHHHhhHHHHHhhhhhHHhhHHHHHHHHHHHHHH
Q 005043 569 QFYESKMAALIRKNGILEGQLAAALVNREAAEKNFSSVLKSRQEMEKKLADSLKE 623 (717)
Q Consensus 569 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~ 623 (717)
|+.++|-+.=+.|+..+ ++++.-.-.++..--.+.++..+|+.++.|+.+..+|
T Consensus 20 eLl~TKNaLnvvk~DLI-~rvdELt~E~e~l~~El~s~~~~~~r~~~ri~elEeE 73 (77)
T 2w83_C 20 QLLETKNALNIVKNDLI-AKVDELTCEKDVLQGELEAVKQAKLKLEEKNRELEEE 73 (77)
T ss_dssp HHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC------
T ss_pred HHHHHHHHHHHHHHHHH-HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 67778887777777644 6677777777777777777777777777666655544
No 406
>3lp9_A LS-24; SEED albumin, plant protein; HET: SPM; 2.20A {Lathyrus sativus} PDB: 3s0l_A 3v6n_A 4hsd_A 3s18_A
Probab=46.18 E-value=1.5e+02 Score=28.99 Aligned_cols=61 Identities=13% Similarity=0.215 Sum_probs=36.2
Q ss_pred CcEEEEEcCCCCCCCCCeEEEEECCCCcEE-----EeecCCCCCC------CCcceEEEEE--CCEEEEEecCCCCCccC
Q 005043 259 DKNLLIFGGSSKSKTLNDLYSLDFETMIWT-----RIKIRGFHPS------PRAGCCGVLC--GTKWYIAGGGSRKKRHA 325 (717)
Q Consensus 259 ~~~lyV~GG~~~~~~~ndv~~yd~~t~~W~-----~v~~~g~~P~------~R~~~sav~~--~~~IyV~GG~~~~~~~~ 325 (717)
+..+|+|-|. ..|+||..+++-. .+.. + .|. +..-.+++.. ++++|+|-| +
T Consensus 129 ~~k~yfFkG~-------~yw~~d~~~~~~~~gyPk~i~~-g-~p~~~~~g~p~~iDAA~~~~~~g~~YfFkg-------~ 192 (227)
T 3lp9_A 129 GKEVYLFKGD-------QYARIDYGSNSMVNKEIKSISS-G-YPCFRNTIFESGADAAFASHKTNEVYFFKD-------D 192 (227)
T ss_dssp TTEEEEEETT-------EEEEEETTTTEESSSSCEEHHH-H-CGGGTTSGGGGCCSEEEECSSTTEEEEEET-------T
T ss_pred CCEEEEEECC-------EEEEEeCCCccccCCCCeEHHH-C-CCCccccccCCCccEEEEcCCCceEEEEEC-------C
Confidence 3448999873 6899998654311 1111 1 121 1222344442 589999998 4
Q ss_pred eEEEEECCCC
Q 005043 326 ETLIFDILKG 335 (717)
Q Consensus 326 dv~~yD~~t~ 335 (717)
.-|+||..+.
T Consensus 193 ~Ywr~d~~~~ 202 (227)
T 3lp9_A 193 HYARVKVTPX 202 (227)
T ss_dssp EEEEEECCSS
T ss_pred EEEEEECCcc
Confidence 6899998765
No 407
>2ic6_A Nucleocapsid protein; hantavirus, bunyaviridae, ssRNA negative- strand viruses, antiparallel coiled coil, viral protein; 1.15A {Sin nombre virus}
Probab=46.05 E-value=74 Score=25.82 Aligned_cols=27 Identities=15% Similarity=0.171 Sum_probs=21.1
Q ss_pred HHHHHHHhcchhHHHHHHHhhHHHHHh
Q 005043 575 MAALIRKNGILEGQLAAALVNREAAEK 601 (717)
Q Consensus 575 ~~~~~~~~~~~~~~~~~~~~~~~~~e~ 601 (717)
|..|....-..|+||..|..-...|++
T Consensus 7 l~eLq~e~~~~E~QL~~A~QKLkdA~~ 33 (78)
T 2ic6_A 7 LKEVQDNITLHEQRLVTTRQKLKDAER 33 (78)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445555666789999999988888887
No 408
>3q8t_A Beclin-1; autophagy, ATG14L uvrag, apoptosis; 1.90A {Rattus norvegicus}
Probab=46.01 E-value=71 Score=26.99 Aligned_cols=32 Identities=13% Similarity=0.250 Sum_probs=16.8
Q ss_pred HHhhHHHHHHHHHHHHHHHHHHHHHHhhhhhh
Q 005043 606 VLKSRQEMEKKLADSLKEMELLKEKLAGLELA 637 (717)
Q Consensus 606 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 637 (717)
++..-+++|+.-+.+..|++.+++....++.-
T Consensus 23 L~~eL~~lEke~~~l~~el~~le~E~~~L~~e 54 (96)
T 3q8t_A 23 LIQELEDVEKNRKVVAENLEKVQAEAERLDQE 54 (96)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHHhhH
Confidence 34444455555555555555555555544433
No 409
>4hvt_A Ritya.17583.B, post-proline cleaving enzyme; ssgcid, structural genomics, S structural genomics center for infectious disease; 1.70A {Rickettsia typhi}
Probab=45.40 E-value=2.7e+02 Score=32.11 Aligned_cols=203 Identities=15% Similarity=0.086 Sum_probs=97.9
Q ss_pred CCCCceEEEEEECCCCcEEEeeecCCCCCCce------eeEE-EEE-CCEEEEEccc----cCCCCCcCcEEEEEcCCCc
Q 005043 168 SGSDRVSVWTFDTETECWSVVEAKGDIPVARS------GHTV-VRA-SSVLILFGGE----DGKRRKLNDLHMFDLKSLT 235 (717)
Q Consensus 168 ~~~~~~~v~~yD~~t~~W~~l~~~g~~P~~R~------~hs~-~~~-~~~Lyv~GG~----~~~~~~~~~v~~yD~~t~~ 235 (717)
+++.-..+..||+.|.++-.-.. .|.... -++. +.. ++.+|+.--. .....+...+++.-..|..
T Consensus 151 ~G~d~~~~~~~d~~t~~~~~~~~---~~~~k~~~~~~~~~~~~~W~d~~~~~~~~~~~~~~~~~~~~~~~v~~~~~Gt~~ 227 (711)
T 4hvt_A 151 GGKDEMFFREWDLEKKDFVKNGF---EPITNSGKLLEGKFTYPTWINKDTIIFNLVLHKNEITSSLYPNSLYIWKRGESI 227 (711)
T ss_dssp TTCSEEEEEEEETTTTEECTTCS---CCBCTTCCBCCEETCCEEEEETTEEEECCCCSTTCBCTTSSBCEEEEEETTSCG
T ss_pred CCCceeEEEEEECCcCCcCCCCc---ccccccccccccccceeeEECCCEEEEEeCCCCCCcCcCCCCCEEEEEECCCCh
Confidence 44556679999999998853111 122211 1222 444 5677775211 1112244556766555432
Q ss_pred eEeccCCCCCCCCCcccEEEE-ECCc----EEEEEcCCCCCCCCCeEEEEECCC--CcEEEeecCCCCCCCCcceEEEEE
Q 005043 236 WLPLHCTGTGPSPRSNHVAAL-YDDK----NLLIFGGSSKSKTLNDLYSLDFET--MIWTRIKIRGFHPSPRAGCCGVLC 308 (717)
Q Consensus 236 W~~l~~~g~~P~~R~~~aa~~-~~~~----~lyV~GG~~~~~~~ndv~~yd~~t--~~W~~v~~~g~~P~~R~~~sav~~ 308 (717)
=.-.... ..+.......+.. .+++ .++|.-+. ..+.+.++..|... ..|..+.. |. ... -....
T Consensus 228 ~~~~~v~-~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~--~~~~~~~~~~~~~~~~~~~~~l~~----~~-~~~-~~~~~ 298 (711)
T 4hvt_A 228 EKAKKLF-EVPKEYIYVSAGKLLSDTISSSLIFISANK--DFYNYDNYILDTKYKNLKLQKINM----PS-DAT-LQGSF 298 (711)
T ss_dssp GGCEEEE-ECCTTSCEEEEEESSCTTTCSSEEEEEEES--SSSCEEEEEEECSSSSCEEEECCS----CT-TCE-EEEEE
T ss_pred HHCeEEe-ccCCCceEEEEEEecCCCceEEEEEEEEec--ccCceeEEEEcCCCCCCcceEeec----CC-cce-EeeeE
Confidence 1100000 0111122222222 2333 23443222 22347788888764 67887732 22 222 13456
Q ss_pred CCEEEEEecCCC-----CCccCeEEEEECCC--------CcEEEeecCCCCCCCCCcceEEEEEEeCCCcEEEEEcCCCC
Q 005043 309 GTKWYIAGGGSR-----KKRHAETLIFDILK--------GEWSVAITSPSSSVTSNKGFTLVLVQHKEKDFLVAFGGIKK 375 (717)
Q Consensus 309 ~~~IyV~GG~~~-----~~~~~dv~~yD~~t--------~~W~~l~~~p~~~~~~r~g~s~v~v~~~~~~~I~v~GG~~~ 375 (717)
++++||....+- ......+..+|+.+ ..|+.+-. | . .......+.+. ++.|++..-.+
T Consensus 299 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~-~-~---~~~~l~~~~~~---~~~l~~~~~~~- 369 (711)
T 4hvt_A 299 KEYVFWLLRSDWKFKSHNIKAGSLVALHFTDLLKTESDKTSLKILFT-P-T---ANEVFNFISTT---KDRVFLATYDN- 369 (711)
T ss_dssp TTEEEEECSSCEEETTEEECTTCEEEEEGGGGGSCGGGCTTCEEEEC-C-C---TTEEEEEEEEC---SSCEEEEEEET-
T ss_pred CCEEEEEECcccccccccCCCCeEEEEECCcccccccccccceEEEC-C-C---CCCeEEEEEEE---CCEEEEEEEEC-
Confidence 899999775431 12345788998765 46987431 1 1 11112222221 34555443322
Q ss_pred CCCCeEEEEEccCCccc
Q 005043 376 EPSNQVEVLSIEKNESS 392 (717)
Q Consensus 376 ~~~n~v~vyd~~~~eW~ 392 (717)
....+.++++.+.+|.
T Consensus 370 -~~~~l~~~~~~~g~~~ 385 (711)
T 4hvt_A 370 -VVAKVVTFTLENEQWT 385 (711)
T ss_dssp -TEEEEEEECEETTEEC
T ss_pred -CEEEEEEEECCCCceE
Confidence 2347888988877764
No 410
>3mq9_A Bone marrow stromal antigen 2 fused to maltose-BI periplasmic protein; HIV, antiviral protein; 2.80A {Escherichia coli}
Probab=45.32 E-value=57 Score=35.39 Aligned_cols=52 Identities=17% Similarity=0.261 Sum_probs=33.8
Q ss_pred chhHHHHHHHhhHHHHHhhhhhH----HhhHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 005043 584 ILEGQLAAALVNREAAEKNFSSV----LKSRQEMEKKLADSLKEMELLKEKLAGLE 635 (717)
Q Consensus 584 ~~~~~~~~~~~~~~~~e~~~~~~----~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 635 (717)
.|+.||+.+....-++||.-+.. .--...||+|++..++.+++|.-.|..++
T Consensus 401 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 456 (471)
T 3mq9_A 401 LLQQELTEAQKGFQDVEAQAATANHTVMALMASLDAEKAQGQKKVEELEGEITTLN 456 (471)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhhHHHHHHHhhhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 57888888888888888865543 22345666666666666666555554443
No 411
>3q8t_A Beclin-1; autophagy, ATG14L uvrag, apoptosis; 1.90A {Rattus norvegicus}
Probab=45.29 E-value=64 Score=27.25 Aligned_cols=10 Identities=30% Similarity=0.255 Sum_probs=4.2
Q ss_pred HHHHHHHhhh
Q 005043 666 LDDTQKELHS 675 (717)
Q Consensus 666 ~~~~~~~~~~ 675 (717)
+-+.|.|++|
T Consensus 69 l~e~~dE~~S 78 (96)
T 3q8t_A 69 QLELDDELKS 78 (96)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 3344444444
No 412
>3mq9_A Bone marrow stromal antigen 2 fused to maltose-BI periplasmic protein; HIV, antiviral protein; 2.80A {Escherichia coli}
Probab=45.26 E-value=74 Score=34.49 Aligned_cols=21 Identities=29% Similarity=0.450 Sum_probs=14.4
Q ss_pred chhhHHHHHHHHHHHHHHhhh
Q 005043 655 LEHDVAFLKAVLDDTQKELHS 675 (717)
Q Consensus 655 ~~~~~~~~~~~~~~~~~~~~~ 675 (717)
||.+|.-|.+-|+|..-|+..
T Consensus 448 ~~~~~~~~~~~~~~~~~~~~~ 468 (471)
T 3mq9_A 448 LEGEITTLNHKLQDASAEVER 468 (471)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 567777777777777666543
No 413
>1ck7_A Protein (gelatinase A); hydrolase (metalloprotease), FULL-length, metalloproteinase; 2.80A {Homo sapiens} SCOP: a.20.1.2 b.66.1.1 d.92.1.11 g.14.1.2 g.14.1.2 g.14.1.2 PDB: 1gxd_A
Probab=45.24 E-value=91 Score=35.54 Aligned_cols=157 Identities=13% Similarity=0.106 Sum_probs=73.6
Q ss_pred EEEEECCEEEEEccccCCCCCcCcEEEEEcCCC-ceEeccCC---CCCCCCCcccEEEEECCcEEEEEcCCCCCCCCCeE
Q 005043 202 TVVRASSVLILFGGEDGKRRKLNDLHMFDLKSL-TWLPLHCT---GTGPSPRSNHVAALYDDKNLLIFGGSSKSKTLNDL 277 (717)
Q Consensus 202 s~~~~~~~Lyv~GG~~~~~~~~~~v~~yD~~t~-~W~~l~~~---g~~P~~R~~~aa~~~~~~~lyV~GG~~~~~~~ndv 277 (717)
+++..++.+|+|-| +.+|+++.... ........ ..+|. ....+.....++.+|+|-| +..
T Consensus 448 Ait~~rg~~yfFKg--------~~yWr~~~~~~~~~~P~~Is~~wp~LP~-~IDAA~~~~~~~k~yFFkG-------~~y 511 (631)
T 1ck7_A 448 GIAQIRGEIFFFKD--------RFIWRTVTPRDKPMGPLLVATFWPELPE-KIDAVYEAPQEEKAVFFAG-------NEY 511 (631)
T ss_dssp EEEECSSSEEEECS--------SEEEEESCTTSCCEEEEEGGGTCTTSCS-SCSBCCEETTTTEEEEEET-------TEE
T ss_pred eeEecCCcEEEEcC--------CEEEEEcCCCCCCCCceeccccCCCCCc-cceEEEEECCCCEEEEEec-------CEE
Confidence 45557889999955 34666655431 11111000 12332 2333322223334888866 358
Q ss_pred EEEECCC---CcEEEeecCCCCCCCCcceEEEE--ECCEEEEEecCCCCCccCeEEEEECCCCcEEEeecCCCCC----C
Q 005043 278 YSLDFET---MIWTRIKIRGFHPSPRAGCCGVL--CGTKWYIAGGGSRKKRHAETLIFDILKGEWSVAITSPSSS----V 348 (717)
Q Consensus 278 ~~yd~~t---~~W~~v~~~g~~P~~R~~~sav~--~~~~IyV~GG~~~~~~~~dv~~yD~~t~~W~~l~~~p~~~----~ 348 (717)
|+|+..+ +-=+.+...+.+..+..--++.. .++++|+|-| +..|+||..+.+-. ...|... +
T Consensus 512 Wry~~~~l~~GYPk~Is~~G~P~~~~~IDAAf~~~~~gktYFFkG-------~~ywryd~~~~~vd--~gYPk~i~~~w~ 582 (631)
T 1ck7_A 512 WIYSASTLERGYPKPLTSLGLPPDVQRVDAAFNWSKNKKTYIFAG-------DKFWRYNEVKKKMD--PGFPKLIADAWN 582 (631)
T ss_dssp EEEETTEECTTCCEEGGGGTCCTTCCCCCBCCCCTTTCEEEEEET-------TEEEEEETTTTEEC--TTCCEETTTSCS
T ss_pred EEECCCccccCCCccchhcCCCCCCCcceeEEEecCCCeEEEEEC-------CEEEEEcCCccccc--CCCCcchHhhcC
Confidence 9998521 00112222221111111122333 3689999988 46999998765311 1001000 0
Q ss_pred CCCcceEEEEEEeCCCcEEEEEcCCCCCCCCeEEEEEccCCc
Q 005043 349 TSNKGFTLVLVQHKEKDFLVAFGGIKKEPSNQVEVLSIEKNE 390 (717)
Q Consensus 349 ~~r~g~s~v~v~~~~~~~I~v~GG~~~~~~n~v~vyd~~~~e 390 (717)
......- +++...+.+++|+|-|. ..|.||.....
T Consensus 583 G~p~~iD-AAf~~~~~g~~YFFkG~------~Ywr~d~~~~~ 617 (631)
T 1ck7_A 583 AIPDNLD-AVVDLQGGGHSYFFKGA------YYLKLENQSLK 617 (631)
T ss_dssp SCCTTCC-EEECCTTSCBCEEEETT------EEECCBTTBTT
T ss_pred CCCCCCc-EeEEEcCCCeEEEEECC------EEEEEeCccce
Confidence 0001111 22333334678888775 66777765443
No 414
>3p5b_L Low density lipoprotein receptor variant; B-propellor, convertase, hydrolase-lipid binding P complex; 3.30A {Homo sapiens} PDB: 3p5c_L
Probab=45.13 E-value=2.9e+02 Score=28.89 Aligned_cols=196 Identities=12% Similarity=0.002 Sum_probs=104.4
Q ss_pred eEEEEE--CCEEEEEcccCCCCCcccEEEEEcCCC----ceEEccccccCCCCCCCCCCCcccceEEEEE--CCEEEEEe
Q 005043 92 HAAAVI--GNKMIVVGGESGNGLLDDVQVLNFDRF----SWTAASSKLYLSPSSLPLKIPACRGHSLISW--GKKVLLVG 163 (717)
Q Consensus 92 haav~~--~~~lyV~GG~~~~~~~~~v~~yd~~t~----~W~~l~~~~~~~~~~~~~~~p~r~~hs~v~~--~~~Iyv~G 163 (717)
.+.++. ++.||+.--.. ..++++++... ....+... .. ..-.++++. ++.||+.-
T Consensus 115 ~~l~~d~~~~~lywsD~~~-----~~I~~~~~~g~~~~~~~~~~~~~----------~~--~~p~glavD~~~~~lY~~d 177 (400)
T 3p5b_L 115 VALDTEVASNRIYWSDLSQ-----RMICSTQLDRAHGVSSYDTVISR----------DI--QAPDGLAVDWIHSNIYWTD 177 (400)
T ss_dssp EEEEEETTTTEEEEEETTT-----TEEEEEEC------CCCEEEECS----------SC--SCEEEEEEETTTTEEEEEE
T ss_pred eEEeeeeccCceEEEecCC-----CeEEEEEcccCCCCCcceEEEeC----------CC--CCcccEEEEecCCceEEEE
Confidence 344444 57888874322 35888888752 22222210 01 112344443 78999985
Q ss_pred ccCCCCCCceEEEEEECCCCcEEEeeecCCCCCCceeeEEEEE--CCEEEEEccccCCCCCcCcEEEEEcCCCceEeccC
Q 005043 164 GKTDSGSDRVSVWTFDTETECWSVVEAKGDIPVARSGHTVVRA--SSVLILFGGEDGKRRKLNDLHMFDLKSLTWLPLHC 241 (717)
Q Consensus 164 G~~~~~~~~~~v~~yD~~t~~W~~l~~~g~~P~~R~~hs~~~~--~~~Lyv~GG~~~~~~~~~~v~~yD~~t~~W~~l~~ 241 (717)
.. ...++++|+....-..+... .+..| ..+++. ++.||+.--. ....|+++++....-..+..
T Consensus 178 ~~------~~~I~~~~~~g~~~~~l~~~-~~~~P---~~iavdp~~g~ly~td~~-----~~~~I~~~~~dG~~~~~~~~ 242 (400)
T 3p5b_L 178 SV------LGTVSVADTKGVKRKTLFRE-NGSKP---RAIVVDPVHGFMYWTDWG-----TPAKIKKGGLNGVDIYSLVT 242 (400)
T ss_dssp TT------TTEEEEECTTTCSEEEEEEC-SSCCE---EEEEEETTTTEEEEEECS-----SSCCEEEEETTSCSCEEEEC
T ss_pred CC------CCeEEEEeCCCCceEEEEeC-CCCCc---ceEEEecccCeEEEEeCC-----CCCEEEEEeCCCCccEEEEE
Confidence 43 23689999987765554421 22222 244443 5788887311 12569999987544333311
Q ss_pred CCCCCCCCcccEEEEE-CCcEEEEEcCCCCCCCCCeEEEEECCCCcEEEeecCCCCCCCCcceEEEEECCEEEEEecCCC
Q 005043 242 TGTGPSPRSNHVAALY-DDKNLLIFGGSSKSKTLNDLYSLDFETMIWTRIKIRGFHPSPRAGCCGVLCGTKWYIAGGGSR 320 (717)
Q Consensus 242 ~g~~P~~R~~~aa~~~-~~~~lyV~GG~~~~~~~ndv~~yd~~t~~W~~v~~~g~~P~~R~~~sav~~~~~IyV~GG~~~ 320 (717)
..+..| ..+++- .++.||+.-.. .+.|+++|++...-..+.... .......++++.++.||+.--..
T Consensus 243 -~~l~~P---~glavd~~~~~lY~aD~~-----~~~I~~~d~dG~~~~~~~~~~--~~l~~P~gl~v~~~~lywtd~~~- 310 (400)
T 3p5b_L 243 -ENIQWP---NGITLDLLSGRLYWVDSK-----LHSISSIDVNGGNRKTILEDE--KRLAHPFSLAVFEDKVFWTDIIN- 310 (400)
T ss_dssp -SSCSCE---EEEEEETTTTEEEEEETT-----TTEEEEEETTSCCCEEEEECS--STTSSEEEEEEETTEEEEEESSS-
T ss_pred -CCCCce---EEEEEEeCCCEEEEEECC-----CCEEEEEeCCCCccEEEEeCC--CCCCCCEEEEEeCCEEEEecCCC-
Confidence 111111 123333 35568887432 367999999765444443210 11122346667889999987432
Q ss_pred CCccCeEEEEECCCC
Q 005043 321 KKRHAETLIFDILKG 335 (717)
Q Consensus 321 ~~~~~dv~~yD~~t~ 335 (717)
..|+++|..+.
T Consensus 311 ----~~V~~~~~~~G 321 (400)
T 3p5b_L 311 ----EAIFSANRLTG 321 (400)
T ss_dssp ----CSEEEEESSSC
T ss_pred ----CeEEEEEcCCC
Confidence 34888885443
No 415
>2k48_A Nucleoprotein; viral protein; NMR {Andes virus}
Probab=45.13 E-value=96 Score=26.49 Aligned_cols=49 Identities=31% Similarity=0.267 Sum_probs=34.2
Q ss_pred HHHHHHHHHHHHhcchhHHHHHHHhhHHHHHh---------hhhhHHhhHHHHHHHHHH
Q 005043 570 FYESKMAALIRKNGILEGQLAAALVNREAAEK---------NFSSVLKSRQEMEKKLAD 619 (717)
Q Consensus 570 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~---------~~~~~~~~~~~~~~~~~~ 619 (717)
+--..|..|....-..|+||..|..-...||+ |++ ++++|+..=.-|.+
T Consensus 32 ~tM~~ieeLQ~Ei~~~E~QL~iArQKLkdAe~~~E~DPDevNK~-tl~~R~~~Vsalq~ 89 (107)
T 2k48_A 32 FTMSTLQELQENITAHEQQLVTARQKLKDAEKAVEVDPDDVNKS-TLQNRRAAVSTLET 89 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHH-HHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcHHHHH-HHHHHHHHHHHHHH
Confidence 44556777777778899999999998888887 333 45666654333333
No 416
>4gq1_A NUP37; propeller, transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4gq2_P 4fhl_A 4fhm_A 4fhn_A
Probab=44.25 E-value=2.8e+02 Score=28.44 Aligned_cols=205 Identities=10% Similarity=0.004 Sum_probs=0.0
Q ss_pred CCEEEEEeccCCCCCCceEEEEEECCCCcEEEeeecCCCCCCceeeEEEEE----------CCEEEEEccccCCCCCcCc
Q 005043 156 GKKVLLVGGKTDSGSDRVSVWTFDTETECWSVVEAKGDIPVARSGHTVVRA----------SSVLILFGGEDGKRRKLND 225 (717)
Q Consensus 156 ~~~Iyv~GG~~~~~~~~~~v~~yD~~t~~W~~l~~~g~~P~~R~~hs~~~~----------~~~Lyv~GG~~~~~~~~~~ 225 (717)
++.+++.|+.+. .+.+||..+..-........+..-...-..+.+ ++.+++-||.+..
T Consensus 100 ~~~~las~~~d~------~v~lw~~~~~~~~~~~~~~~~~gH~~~v~~v~~~p~~~~~~~~d~~~las~s~D~t------ 167 (393)
T 4gq1_A 100 YSLFLACVCQDN------TVRLIITKNETIITQHVLGGKSGHHNFVNDIDIADVYSADNRLAEQVIASVGDDCT------ 167 (393)
T ss_dssp EEEEEEEEETTS------CEEEEEEETTEEEEEEEECTTTSCSSCEEEEEEEEEECTTCSEEEEEEEEEETTSE------
T ss_pred CCCEEEEEeCCC------cEEEEECCCCccceeeeecccCCCCCceEEEEEccccccccCCCCCEEEEEECCCe------
Q ss_pred EEEEEcCCCceEeccCCCCCCCCCcccEEEEE-CCcEEEEEcCCCCCCCCCeEEEEECCCCcEEEeecCCCCCCCCcceE
Q 005043 226 LHMFDLKSLTWLPLHCTGTGPSPRSNHVAALY-DDKNLLIFGGSSKSKTLNDLYSLDFETMIWTRIKIRGFHPSPRAGCC 304 (717)
Q Consensus 226 v~~yD~~t~~W~~l~~~g~~P~~R~~~aa~~~-~~~~lyV~GG~~~~~~~ndv~~yd~~t~~W~~v~~~g~~P~~R~~~s 304 (717)
+.++|+.+..=... .........+++.. ++..+++.|+.++. |..||+.+..-................+
T Consensus 168 v~~Wd~~~~~~~~~----~~~~~~~v~~v~~~p~~~~~l~~~~~d~~-----v~~wd~~t~~~~~~~~~~~~~~~~~~~s 238 (393)
T 4gq1_A 168 LIIWRLTDEGPILA----GYPLSSPGISVQFRPSNPNQLIVGERNGN-----IRIFDWTLNLSAEENSQTELVKNPWLLT 238 (393)
T ss_dssp EEEEEEETTEEEEE----EEECSSCEEEEEEETTEEEEEEEEETTSE-----EEEEETTCCC----------CSCCCSEE
T ss_pred EEEEECCCCceeee----ecCCCCCcEEEEECCCCCceEEecCCCCE-----EEEEECCCCcccccccccCCcccceEEe
Q ss_pred EEE-----------------------ECCEEEEEecCCCCCccCeEEEEECCCCc------------EEEeecCCCCCCC
Q 005043 305 GVL-----------------------CGTKWYIAGGGSRKKRHAETLIFDILKGE------------WSVAITSPSSSVT 349 (717)
Q Consensus 305 av~-----------------------~~~~IyV~GG~~~~~~~~dv~~yD~~t~~------------W~~l~~~p~~~~~ 349 (717)
... .+++.++.++.++. +.+||+.+.. |............
T Consensus 239 ~~~~~~~~~~~~~~~~~~v~~v~~~~~dg~~l~s~s~d~~-----i~vwd~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 313 (393)
T 4gq1_A 239 LNTLPLVNTCHSSGIASSLANVRWIGSDGSGILAMCKSGA-----WLRWNLFANNDYNEISDSTMKLGPKNLLPNVQGIS 313 (393)
T ss_dssp EESGGGC------CCSSSCSEEEEETTTTCEEEEECTTSE-----EEEEEC-------------------CCSCSEEEEC
T ss_pred cccccceeeeecccccccceeeeeecCCCCEEEEEeCCCC-----EEEEECccCCCCceEeeecCccccEEEcccccccc
Q ss_pred CCcceEEEEEEeCCCcEEEEEcCCCCCCCCeEEEEEccCCc
Q 005043 350 SNKGFTLVLVQHKEKDFLVAFGGIKKEPSNQVEVLSIEKNE 390 (717)
Q Consensus 350 ~r~g~s~v~v~~~~~~~I~v~GG~~~~~~n~v~vyd~~~~e 390 (717)
.......+......+..+++.|+.++. |.+||+.+.+
T Consensus 314 ~~~~~~~~~~~~~~~~~~~~sgs~Dg~----V~lwd~~~~~ 350 (393)
T 4gq1_A 314 LFPSLLGACPHPRYMDYFATAHSQHGL----IQLINTYEKD 350 (393)
T ss_dssp SSCCSSCCEECSSCTTEEEEEETTTTE----EEEEETTCTT
T ss_pred ccCcceeEEEccCCCCEEEEEECCCCE----EEEEECCCCc
No 417
>1zbt_A RF-1, peptide chain release factor 1; peptide chain release factor 1 (RF-1), structural joint center for structural genomics, JCSG; 2.34A {Streptococcus mutans}
Probab=44.23 E-value=31 Score=36.50 Aligned_cols=55 Identities=15% Similarity=0.160 Sum_probs=21.3
Q ss_pred HHHHHHHHhcchhHHHHHHHh--hHHHHHh------hhhhHHhhHHHHHHHHHHHHHHHHHHH
Q 005043 574 KMAALIRKNGILEGQLAAALV--NREAAEK------NFSSVLKSRQEMEKKLADSLKEMELLK 628 (717)
Q Consensus 574 ~~~~~~~~~~~~~~~~~~~~~--~~~~~e~------~~~~~~~~~~~~~~~~~~~~~~~~~l~ 628 (717)
|+..+..+.+.||.+|++--- ..+.+.| .|..+++..+++++.+.++..-.|+++
T Consensus 18 ~l~~~~~r~~el~~~l~~p~~~~d~~~~~~~~ke~~~l~~~v~~~~~~~~~~~d~~~~~el~~ 80 (371)
T 1zbt_A 18 QLQAVEDRYEELGELLSDPDVVSDTKRFMELSREEANSRETVAVYREYKQVVQNIADAQEMIK 80 (371)
T ss_dssp HHHHHHHHHHHC--------------------CCHHHHHHHHHHHHHHHHHHHHHHHHHHC--
T ss_pred hHHHHHHHHHHHHHHhcCCcchhCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 677788888899888876421 1122211 344444444444444444444444443
No 418
>1ck7_A Protein (gelatinase A); hydrolase (metalloprotease), FULL-length, metalloproteinase; 2.80A {Homo sapiens} SCOP: a.20.1.2 b.66.1.1 d.92.1.11 g.14.1.2 g.14.1.2 g.14.1.2 PDB: 1gxd_A
Probab=44.23 E-value=1.2e+02 Score=34.69 Aligned_cols=153 Identities=15% Similarity=0.211 Sum_probs=75.6
Q ss_pred eEEEEECCEEEEEeccCCCCCCceEEEEEECCCC-cEEEeeec---CCCCCCceeeEEEE-ECCEEEEEccccCCCCCcC
Q 005043 150 HSLISWGKKVLLVGGKTDSGSDRVSVWTFDTETE-CWSVVEAK---GDIPVARSGHTVVR-ASSVLILFGGEDGKRRKLN 224 (717)
Q Consensus 150 hs~v~~~~~Iyv~GG~~~~~~~~~~v~~yD~~t~-~W~~l~~~---g~~P~~R~~hs~~~-~~~~Lyv~GG~~~~~~~~~ 224 (717)
-+++...+.+|+|=|. .+|+++.... ........ ..+|.. ...+... .++++|+|=| +
T Consensus 447 DAit~~rg~~yfFKg~--------~yWr~~~~~~~~~~P~~Is~~wp~LP~~-IDAA~~~~~~~k~yFFkG--------~ 509 (631)
T 1ck7_A 447 DGIAQIRGEIFFFKDR--------FIWRTVTPRDKPMGPLLVATFWPELPEK-IDAVYEAPQEEKAVFFAG--------N 509 (631)
T ss_dssp SEEEECSSSEEEECSS--------EEEEESCTTSCCEEEEEGGGTCTTSCSS-CSBCCEETTTTEEEEEET--------T
T ss_pred ceeEecCCcEEEEcCC--------EEEEEcCCCCCCCCceeccccCCCCCcc-ceEEEEECCCCEEEEEec--------C
Confidence 3556668899999664 4888876542 22222211 123322 2222222 2578999954 4
Q ss_pred cEEEEEcCCC--ce-EeccCCCCCCC--CCcccEEEEECCcEEEEEcCCCCCCCCCeEEEEECCCCcEE-----EeecCC
Q 005043 225 DLHMFDLKSL--TW-LPLHCTGTGPS--PRSNHVAALYDDKNLLIFGGSSKSKTLNDLYSLDFETMIWT-----RIKIRG 294 (717)
Q Consensus 225 ~v~~yD~~t~--~W-~~l~~~g~~P~--~R~~~aa~~~~~~~lyV~GG~~~~~~~ndv~~yd~~t~~W~-----~v~~~g 294 (717)
..|+|+..+. .+ ..+...| +|. .+...+...-.++.+|+|-|. ..|+||..++.-. .+.. .
T Consensus 510 ~yWry~~~~l~~GYPk~Is~~G-~P~~~~~IDAAf~~~~~gktYFFkG~-------~ywryd~~~~~vd~gYPk~i~~-~ 580 (631)
T 1ck7_A 510 EYWIYSASTLERGYPKPLTSLG-LPPDVQRVDAAFNWSKNKKTYIFAGD-------KFWRYNEVKKKMDPGFPKLIAD-A 580 (631)
T ss_dssp EEEEEETTEECTTCCEEGGGGT-CCTTCCCCCBCCCCTTTCEEEEEETT-------EEEEEETTTTEECTTCCEETTT-S
T ss_pred EEEEECCCccccCCCccchhcC-CCCCCCcceeEEEecCCCeEEEEECC-------EEEEEcCCcccccCCCCcchHh-h
Confidence 5788875210 01 1111111 222 122222211133448888773 6899998665311 1111 0
Q ss_pred CCCCCCcceEEEEEC--CEEEEEecCCCCCccCeEEEEECCCC
Q 005043 295 FHPSPRAGCCGVLCG--TKWYIAGGGSRKKRHAETLIFDILKG 335 (717)
Q Consensus 295 ~~P~~R~~~sav~~~--~~IyV~GG~~~~~~~~dv~~yD~~t~ 335 (717)
-+..+..-.++.... +++|+|-| +..|.||..+.
T Consensus 581 w~G~p~~iDAAf~~~~~g~~YFFkG-------~~Ywr~d~~~~ 616 (631)
T 1ck7_A 581 WNAIPDNLDAVVDLQGGGHSYFFKG-------AYYLKLENQSL 616 (631)
T ss_dssp CSSCCTTCCEEECCTTSCBCEEEET-------TEEECCBTTBT
T ss_pred cCCCCCCCcEeEEEcCCCeEEEEEC-------CEEEEEeCccc
Confidence 011122233444443 89999988 45778877554
No 419
>2eqb_B RAB guanine nucleotide exchange factor SEC2; coiled coil, endocytosis/exocytosis complex; 2.70A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=44.05 E-value=51 Score=27.99 Aligned_cols=52 Identities=23% Similarity=0.135 Sum_probs=24.1
Q ss_pred chhHHHHHHHhhHHHHHhhhhhHHhh--------HHHHHHHHHHHHHHHHHHHHHHhhhh
Q 005043 584 ILEGQLAAALVNREAAEKNFSSVLKS--------RQEMEKKLADSLKEMELLKEKLAGLE 635 (717)
Q Consensus 584 ~~~~~~~~~~~~~~~~e~~~~~~~~~--------~~~~~~~~~~~~~~~~~l~~~~~~~~ 635 (717)
.|..+|+...+.|.+||+.++-+=.. =+++.+.+++.-++...++.|...++
T Consensus 30 ~L~~~l~eE~~~R~~aE~~~~~ie~ElEeLTasLFeEAN~MVa~ar~e~~~~e~kn~~L~ 89 (97)
T 2eqb_B 30 RLREDIAKENELRTKAEEEADKLNKEVEDLTASLFDEANNMVADARKEKYAIEILNKRLT 89 (97)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445555555555555443332111 13444555555555555555554443
No 420
>1go4_E MAD1 (mitotic arrest deficient)-like 1; mitotic spindle checkpoint, cell cycle, mitosis, nuclear Pro; 2.05A {Homo sapiens} SCOP: h.1.22.1
Probab=43.40 E-value=71 Score=27.28 Aligned_cols=76 Identities=22% Similarity=0.203 Sum_probs=46.9
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhc------c-cccccc-cCCccchhhHHHHHHHHHHHHHHhhhhccch
Q 005043 609 SRQEMEKKLADSLKEMELLKEKLAGLELAQEEAN------S-LSNIVH-SDNVRLEHDVAFLKAVLDDTQKELHSTRGVL 680 (717)
Q Consensus 609 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~------~-~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 680 (717)
....+.+|+....+|-+.|++.++.+|..=|... - =--||| ++|.--+.--+ .|-.++-
T Consensus 13 ~~~~lr~ei~~Le~E~~rLr~~~~~LE~~Le~~~l~Gd~~~~~TKVlH~~~NPa~~a~~~-~~~~~e~------------ 79 (100)
T 1go4_E 13 EADTLRLKVEELEGERSRLEEEKRMLEAQLERRALQGDYDQSRTKVLHMSLNPTSVARQR-LREDHSQ------------ 79 (100)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCCSCCCTTTEEEEEESSCHHHHHHHH-HHHHHHH------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccCCccCeeeeecCChHHHHHHH-HHHHHHH------------
Confidence 4556788889999999999999999887766532 1 112444 45554332222 2333333
Q ss_pred hhccccceeeEEEeehhhhhhhhhcc
Q 005043 681 AGERARAFQLQVEVFHLKQRLQSLEN 706 (717)
Q Consensus 681 ~~~~~~~~~~~~~~~~~~~~~~~~~~ 706 (717)
||.|+-.||.|++.||.
T Consensus 80 ---------Lq~E~erLr~~v~~lEe 96 (100)
T 1go4_E 80 ---------LQAECERLRGLLRAMER 96 (100)
T ss_dssp ---------HHHHHHHHHHHHTTCC-
T ss_pred ---------HHHHHHHHHHHHHHHhc
Confidence 45566667778888875
No 421
>3a0f_A Xyloglucanase; beta-propeller, hydrolase; 2.50A {Geotrichum SP}
Probab=43.20 E-value=4.4e+02 Score=30.36 Aligned_cols=216 Identities=13% Similarity=0.133 Sum_probs=103.6
Q ss_pred CEEEEEcccCC-CCCcccEEEEEcCCCceEEccccccCCCCCCCCCCCcc-cceEEEEE---CCEEEEEeccCCCCCCce
Q 005043 99 NKMIVVGGESG-NGLLDDVQVLNFDRFSWTAASSKLYLSPSSLPLKIPAC-RGHSLISW---GKKVLLVGGKTDSGSDRV 173 (717)
Q Consensus 99 ~~lyV~GG~~~-~~~~~~v~~yd~~t~~W~~l~~~~~~~~~~~~~~~p~r-~~hs~v~~---~~~Iyv~GG~~~~~~~~~ 173 (717)
+.+|+..|... .+....+++=+=...+|+.+.... + .+...+.+ ..+.+++. .+.+|+.+.. .
T Consensus 88 ~~~~~~~g~~~~~~~~~~i~~S~DgG~TW~~~~~~~---~--~~~~~~g~~~~~~l~v~p~~~~~v~a~~~~-------~ 155 (763)
T 3a0f_A 88 DRLYLAQGDYVQWDPWAAFLVSDDRGKTFKQYRSPV---P--MGANDMGRNGGERLAVNPHWTDELWFGSRT-------Q 155 (763)
T ss_dssp TCEEEEECSCTTTCSCCEEEEESSTTSSCEEEECSS---C--CCTTSTTTTSBCCEEECTTSTTCEEEECSS-------S
T ss_pred CEEEEEecccccCCCCceEEEECCCCCCceeccCCc---c--cCccccCccccceEEECCCCCCEEEEEeCC-------C
Confidence 67888766311 111233444333346899886310 0 00001122 12334443 3567775421 2
Q ss_pred EEEEEECCCCcEEEeeecCCCCCC---ceeeEEEEE----CCEEEEEccccCCCCCcCcEEEEEcCCCceEeccCCCCCC
Q 005043 174 SVWTFDTETECWSVVEAKGDIPVA---RSGHTVVRA----SSVLILFGGEDGKRRKLNDLHMFDLKSLTWLPLHCTGTGP 246 (717)
Q Consensus 174 ~v~~yD~~t~~W~~l~~~g~~P~~---R~~hs~~~~----~~~Lyv~GG~~~~~~~~~~v~~yD~~t~~W~~l~~~g~~P 246 (717)
.+|+-+-.-.+|+.+.. +|.. ..+...+.+ .+.+|+.....+ .+++=+-.-.+|+.+. ..|
T Consensus 156 ~l~~S~DgG~TW~~~~~---~~~~~~~~~~~~~i~~~p~~~~~~~~~~~~~g------~v~~S~DgG~tW~~~~---~~~ 223 (763)
T 3a0f_A 156 GLWRSTDRAQTWSRMNQ---LPDSSTYGIGIISVIFDPKNVGTAYVASHAVG------GLWVTWDGGANWSQVG---GQP 223 (763)
T ss_dssp CEEEESSTTSSCEECTT---SCCCSCTTTCEEEEEECSSSTTCEEEEESSTT------CEEEESSSSSSCEECT---TCC
T ss_pred cEEEECCCCcCcccccc---CcccCCCccceEEEEECCCCCCEEEEEEeCCC------eEEEECCCCCCccccC---CCc
Confidence 46665555678998862 3332 122222222 246777643111 3444433456899886 223
Q ss_pred --------------------CCCcccEEEEECCcEEEEEcCCCC---CCCCCeEEEEECCCCcEEEeecCCCCC------
Q 005043 247 --------------------SPRSNHVAALYDDKNLLIFGGSSK---SKTLNDLYSLDFETMIWTRIKIRGFHP------ 297 (717)
Q Consensus 247 --------------------~~R~~~aa~~~~~~~lyV~GG~~~---~~~~ndv~~yd~~t~~W~~v~~~g~~P------ 297 (717)
.+...+.++...+..+|+...... ......+++.+-...+|+.+...+..+
T Consensus 224 ~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~g~l~~~~~~~~~~~~~~~g~v~rS~D~G~tW~~~~~~~~~~~~~~~~ 303 (763)
T 3a0f_A 224 TQWSDWTKSIVAASGTAIQSSGPLPIKIALGKNGRLYITYSDAPGPWGVLYGEVWSYDPTNGNWKHITPSREGANTYPAP 303 (763)
T ss_dssp CSCCHHHHHHHHHHCCCCSSSSCEEEEEEECTTSCEEEEEESSCSSSCCCCEEEEEEETTTTEEEECCTTSSSSCEESCC
T ss_pred cccccccccccccccccccCCCCcceeEEECCCCcEEEEeccCCCCCCCcceeEEEEeCCCCceEECCCCCCCCcccccc
Confidence 223334444333344777642110 112346999999999999986431100
Q ss_pred -----CCCcceEEEEE--CCEEEEEecCCCCCccCeEEEEECCCCcEEEe
Q 005043 298 -----SPRAGCCGVLC--GTKWYIAGGGSRKKRHAETLIFDILKGEWSVA 340 (717)
Q Consensus 298 -----~~R~~~sav~~--~~~IyV~GG~~~~~~~~dv~~yD~~t~~W~~l 340 (717)
.+..++..+.+ .+.||+.+.... ....+++-.-...+|+.+
T Consensus 304 ~~~~~~~~gg~~~i~v~~~~~v~~~~~~~~--~~~~l~~S~DgG~tW~~~ 351 (763)
T 3a0f_A 304 TGNKKVVPGGWNGISVGNGDTVVVSTLDAN--GEDSVYLSRDAGNSWKDL 351 (763)
T ss_dssp CCCTTSCCCEEEEEEECSTBCEEEEEESCT--TSCCEEEESBTTSSEEEH
T ss_pred ccccccccCCceeEEEcCCCeEEEEecCCC--CCCCEEEECCCCCCcccC
Confidence 01113333334 356777665211 113344444446789987
No 422
>4f61_I Stathmin-like domain R4; alpha-tubulin, beta-tubulin, GTPase, microtubule, RB3, stath tubulin, cell cycle; HET: GTP GDP; 4.17A {Artificial gene}
Probab=42.97 E-value=95 Score=30.64 Aligned_cols=34 Identities=18% Similarity=0.250 Sum_probs=27.2
Q ss_pred HHHHHHHHHHHHHhcchhHHHHHHHhhHHHHHhh
Q 005043 569 QFYESKMAALIRKNGILEGQLAAALVNREAAEKN 602 (717)
Q Consensus 569 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~ 602 (717)
..-+.|+.++-.+--.+|+|+-+.|+.+-+-++.
T Consensus 45 eEIqkKLeAAEERRks~Ea~~lk~laekrEhe~e 78 (240)
T 4f61_I 45 EEIQKKLEAAEERRKYQEAELLKHLAEKREHERE 78 (240)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHH
Confidence 4557788888888888999999999988666653
No 423
>2jee_A YIIU; FTSZ, septum, coiled-coil, cell division, cell cycle, hypothetical protein; 2.8A {Escherichia coli}
Probab=42.59 E-value=1.4e+02 Score=24.44 Aligned_cols=67 Identities=13% Similarity=0.233 Sum_probs=31.0
Q ss_pred hHHHHHHHHHHHHHHHhcchhHHHHHHHhhHHHHHhhhhhHHhhHHHHHHHHHHHHHHHHHHHHHHh
Q 005043 566 SIYQFYESKMAALIRKNGILEGQLAAALVNREAAEKNFSSVLKSRQEMEKKLADSLKEMELLKEKLA 632 (717)
Q Consensus 566 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 632 (717)
++-+-.|.||+++|..-..|.-.+.+--....++....+.+-.+|..++.+.+..-.|...-.++|.
T Consensus 6 ElleqLE~KIq~avdtI~lLqmEieELKekN~~L~~e~~e~~~~~~~L~~en~qLk~E~~~wq~Rl~ 72 (81)
T 2jee_A 6 EVFEKLEAKVQQAIDTITLLQMEIEELKEKNNSLSQEVQNAQHQREELERENNHLKEQQNGWQERLQ 72 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445567777777775555543333332233333333333334444444444444444444444443
No 424
>1m1j_C Fibrinogen gamma chain; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: d.171.1.1 h.1.8.1 PDB: 1ei3_C
Probab=42.57 E-value=1.5e+02 Score=31.80 Aligned_cols=25 Identities=20% Similarity=-0.029 Sum_probs=13.8
Q ss_pred HHHHhcchhHHHHHHHhhHHHHHhh
Q 005043 578 LIRKNGILEGQLAAALVNREAAEKN 602 (717)
Q Consensus 578 ~~~~~~~~~~~~~~~~~~~~~~e~~ 602 (717)
+-.....||..|..+-..+++++.-
T Consensus 36 V~~~l~~LE~~l~elsn~ts~v~~L 60 (409)
T 1m1j_C 36 TDGELLEIEGLLQQATNSTGSIEYL 60 (409)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344445566666666666666543
No 425
>3tnu_B Keratin, type II cytoskeletal 5; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}
Probab=42.12 E-value=89 Score=27.73 Aligned_cols=29 Identities=17% Similarity=0.182 Sum_probs=16.6
Q ss_pred HHHHHHHHHHHHHhcchhHHHHHHHhhHH
Q 005043 569 QFYESKMAALIRKNGILEGQLAAALVNRE 597 (717)
Q Consensus 569 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 597 (717)
|..+.++..+...+..||.+|+.+-..-+
T Consensus 46 q~L~~el~~l~~~~~~LE~~l~e~e~~~~ 74 (129)
T 3tnu_B 46 QRLRAEIDNVKKQCANLQNAIADAEQRGE 74 (129)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Confidence 45556666666666666666665544333
No 426
>2b5u_A Colicin E3; high resolution colicin E3, ribosome inactivation, ribosome inhibitor, hydrolase; HET: CIT; 2.30A {Escherichia coli} SCOP: b.101.1.1 b.110.1.1 h.4.9.1 PDB: 1jch_A* 1ujw_B* 2ysu_B 1e44_B 2xfz_Y* 2xg1_Y*
Probab=42.09 E-value=44 Score=36.42 Aligned_cols=54 Identities=20% Similarity=0.219 Sum_probs=38.1
Q ss_pred hHHHHHHHHHHHHHHHhcchhHHHHHHHhhHHHHHhhhhhHHhhHHHHHHHHHH
Q 005043 566 SIYQFYESKMAALIRKNGILEGQLAAALVNREAAEKNFSSVLKSRQEMEKKLAD 619 (717)
Q Consensus 566 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~ 619 (717)
.+.|..-.+++-.-.+--.+++++.+|-.++.-+..-|++|+++|.+-|.|-.+
T Consensus 388 ~~w~~~~~~~~~~~~dv~~~~a~~d~~~~~~s~~~~~ls~~me~Rkq~e~k~k~ 441 (551)
T 2b5u_A 388 RMWQMAGLKAQRAQTDVNNKQAAFDAAAKEKSDADAALSSAMESRKKKEDKKRS 441 (551)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhhhccchhhhhhhhhhhHHHHHHHHhhcccchhhhhhhhhhcccchhhhhhh
Confidence 355444445544444444568899999999999999999999999666655444
No 427
>3ghg_A Fibrinogen alpha chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_A* 2a45_G*
Probab=41.98 E-value=39 Score=37.11 Aligned_cols=43 Identities=14% Similarity=0.193 Sum_probs=25.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhhhhhhhhcccccccccCCccchhhHHH
Q 005043 612 EMEKKLADSLKEMELLKEKLAGLELAQEEANSLSNIVHSDNVRLEHDVAF 661 (717)
Q Consensus 612 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 661 (717)
+||++++.+.+++..-...|+.|+ ++|.|+ +++=.|||-||..
T Consensus 114 ELRRrIqyLKekVdnQlsnIrvLQ------snLedq-~~kIQRLEvDIdi 156 (562)
T 3ghg_A 114 DLRSRIEVLKRKVIEKVQHIQLLQ------KNVRAQ-LVDMKRLEVDIDI 156 (562)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH------HHHHHH-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH------HHHHHH-HHHHHHHHHHHHH
Confidence 555555555555555445555555 555544 3556788888754
No 428
>3v64_C Agrin; beta propeller, laminin-G, signaling, protein binding; HET: NAG; 2.85A {Rattus norvegicus}
Probab=41.97 E-value=3e+02 Score=28.11 Aligned_cols=217 Identities=10% Similarity=-0.019 Sum_probs=119.3
Q ss_pred cEEEEEcCCCceEEccccccCCCCCCCCCCCcccceEEEEE--CCEEEEEeccCCCCCCceEEEEEECCCCcEEEeeecC
Q 005043 115 DVQVLNFDRFSWTAASSKLYLSPSSLPLKIPACRGHSLISW--GKKVLLVGGKTDSGSDRVSVWTFDTETECWSVVEAKG 192 (717)
Q Consensus 115 ~v~~yd~~t~~W~~l~~~~~~~~~~~~~~~p~r~~hs~v~~--~~~Iyv~GG~~~~~~~~~~v~~yD~~t~~W~~l~~~g 192 (717)
.+.++++.......+... .....+++.. ++.||+.--. ...++++++.+...+.+...+
T Consensus 54 ~I~~i~~~g~~~~~~~~~-------------~~~~~~l~~d~~~~~ly~~D~~------~~~I~r~~~~g~~~~~~~~~~ 114 (349)
T 3v64_C 54 DIRQVLPHRSEYTLLLNN-------------LENAIALDFHHRRELVFWSDVT------LDRILRANLNGSNVEEVVSTG 114 (349)
T ss_dssp CEEEECTTSCCEEEEECS-------------CSCEEEEEEETTTTEEEEEETT------TTEEEEEETTSCSCEEEECSS
T ss_pred ceEEEeCCCCeeEEeecC-------------CCceEEEEEeccccEEEEEecc------CCceEEEecCCCCceEEEeCC
Confidence 578888888777665431 1112344443 5889988432 236999999887655543211
Q ss_pred CCCCCceeeEEEE--ECCEEEEEccccCCCCCcCcEEEEEcCCCceEeccCCCCCCCCCcccEEEEE-CCcEEEEEcCCC
Q 005043 193 DIPVARSGHTVVR--ASSVLILFGGEDGKRRKLNDLHMFDLKSLTWLPLHCTGTGPSPRSNHVAALY-DDKNLLIFGGSS 269 (717)
Q Consensus 193 ~~P~~R~~hs~~~--~~~~Lyv~GG~~~~~~~~~~v~~yD~~t~~W~~l~~~g~~P~~R~~~aa~~~-~~~~lyV~GG~~ 269 (717)
+..+ .++++ .++.||+.-. ..+.|+++++....-..+.. ..+..|+ .+++. .++.||+..-..
T Consensus 115 -~~~p---~glavd~~~g~ly~~d~------~~~~I~~~~~dG~~~~~l~~-~~l~~P~---~iavdp~~g~ly~td~~~ 180 (349)
T 3v64_C 115 -LESP---GGLAVDWVHDKLYWTDS------GTSRIEVANLDGAHRKVLLW-QSLEKPR---AIALHPMEGTIYWTDWGN 180 (349)
T ss_dssp -CSCC---CEEEEETTTTEEEEEET------TTTEEEEEETTSCSCEEEEC-TTCSCEE---EEEEETTTTEEEEEECSS
T ss_pred -CCCc---cEEEEecCCCeEEEEcC------CCCeEEEEcCCCCceEEEEe-CCCCCcc---eEEEecCcCeEEEeccCC
Confidence 2212 23444 3689998742 23579999987654333321 1222232 33343 245577764322
Q ss_pred CCCCCCeEEEEECCCCcEEEeecCCCCCCCCcceEEEEE--CCEEEEEecCCCCCccCeEEEEECCCCcEEEeecCCCCC
Q 005043 270 KSKTLNDLYSLDFETMIWTRIKIRGFHPSPRAGCCGVLC--GTKWYIAGGGSRKKRHAETLIFDILKGEWSVAITSPSSS 347 (717)
Q Consensus 270 ~~~~~ndv~~yd~~t~~W~~v~~~g~~P~~R~~~sav~~--~~~IyV~GG~~~~~~~~dv~~yD~~t~~W~~l~~~p~~~ 347 (717)
...|++++++...-+.+... .-..-.+.++. +++||+.-... ..|+++|++...-..+....
T Consensus 181 ----~~~I~r~~~dG~~~~~~~~~----~~~~PnGla~d~~~~~lY~aD~~~-----~~I~~~~~dG~~~~~~~~~~--- 244 (349)
T 3v64_C 181 ----TPRIEASSMDGSGRRIIADT----HLFWPNGLTIDYAGRRMYWVDAKH-----HVIERANLDGSHRKAVISQG--- 244 (349)
T ss_dssp ----SCEEEEEETTSCSCEESCCS----SCSCEEEEEEETTTTEEEEEETTT-----TEEEEEETTSCSCEEEECSS---
T ss_pred ----CCEEEEEeCCCCCcEEEEEC----CCCCcceEEEeCCCCEEEEEECCC-----CEEEEEeCCCCceEEEEeCC---
Confidence 35799999876544444221 01112244443 68999986533 46999998764433333211
Q ss_pred CCCCcceEEEEEEeCCCcEEEEEcCCCCCCCCeEEEEEccCCc
Q 005043 348 VTSNKGFTLVLVQHKEKDFLVAFGGIKKEPSNQVEVLSIEKNE 390 (717)
Q Consensus 348 ~~~r~g~s~v~v~~~~~~~I~v~GG~~~~~~n~v~vyd~~~~e 390 (717)
...-+++++. ++.||+.--. .+.|..++..+.+
T Consensus 245 --~~~P~giav~----~~~ly~td~~----~~~V~~~~~~~G~ 277 (349)
T 3v64_C 245 --LPHPFAITVF----EDSLYWTDWH----TKSINSANKFTGK 277 (349)
T ss_dssp --CSSEEEEEEE----TTEEEEEETT----TTEEEEEETTTCC
T ss_pred --CCCceEEEEE----CCEEEEecCC----CCeEEEEEccCCC
Confidence 1122444443 5678876432 3478888865554
No 429
>3iox_A AGI/II, PA; alpha helix, PPII helix, supersandwich fold, surface adhesin WALL, peptidoglycan-anchor, cell adhesion; HET: PMS; 1.80A {Streptococcus mutans} PDB: 3ipk_A* 1jmm_A
Probab=41.79 E-value=95 Score=33.93 Aligned_cols=33 Identities=21% Similarity=0.124 Sum_probs=22.6
Q ss_pred hHHHHHHHHHHHHHHHhcchhHHHHHHHhhHHH
Q 005043 566 SIYQFYESKMAALIRKNGILEGQLAAALVNREA 598 (717)
Q Consensus 566 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 598 (717)
+..+.||.++++.-.+|+.++++.+++-+.-++
T Consensus 27 ~aka~Ye~~~ae~~a~n~~i~aeNeaikkrNa~ 59 (497)
T 3iox_A 27 DAKAAYEAAVAANNAANAALTAENTAIKKRNAD 59 (497)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHH
Confidence 456688888888888777777776666543333
No 430
>1cii_A Colicin IA; bacteriocin, ION channel formation, transmembrane protein; 3.00A {Escherichia coli} SCOP: f.1.1.1 h.4.3.1
Probab=41.66 E-value=1e+02 Score=33.27 Aligned_cols=57 Identities=16% Similarity=0.235 Sum_probs=37.5
Q ss_pred HHHHHHHHhcchhHHHHHHHhhHHHHHhhhhhHHhhHHHHHHHHHHHHHHHHHHHHH
Q 005043 574 KMAALIRKNGILEGQLAAALVNREAAEKNFSSVLKSRQEMEKKLADSLKEMELLKEK 630 (717)
Q Consensus 574 ~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 630 (717)
|++++.-.--.+..|+.+...+.-+||.+|.-.++.+.-+|.+++.+.+...+-|+|
T Consensus 364 EItsaeSaInslqaqvSa~t~e~k~A~d~l~a~~kek~~~~n~~a~~~~KiAE~KrK 420 (602)
T 1cii_A 364 KITSAESAVNSARNNLSARTNEQKHANDALNALLKEKENIRNQLSGINQKIAEEKRK 420 (602)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHh
Confidence 344444444456678888888888888888888888877777776554443333333
No 431
>4d9s_A UVB-resistance protein UVR8; UV resistance, UV-B photoreceptor, tryptophan chromophores, homodimer, COP1, chromatin-binding protein; 1.70A {Arabidopsis thaliana} PDB: 4dnw_A 4dnu_A 4dnv_A
Probab=41.56 E-value=3.3e+02 Score=28.49 Aligned_cols=19 Identities=21% Similarity=0.417 Sum_probs=13.0
Q ss_pred cccEEEEECCcEEEEEcCC
Q 005043 250 SNHVAALYDDKNLLIFGGS 268 (717)
Q Consensus 250 ~~~aa~~~~~~~lyV~GG~ 268 (717)
..|++++..+..+|.+|-.
T Consensus 338 ~~hs~alt~~G~v~~wG~n 356 (406)
T 4d9s_A 338 WRHTLAVTERNNVFAWGRG 356 (406)
T ss_dssp SSEEEEEETTSCEEEEECC
T ss_pred CCeEEEEeCCCCEEEecCC
Confidence 4567777766559998853
No 432
>3mov_A Lamin-B1; LMNB1, B-type lamins, intermediate filament (IF), nucleus, coiled coil, structural genomics consortium, SGC, structural protein; 2.40A {Homo sapiens} PDB: 3tyy_A
Probab=41.00 E-value=45 Score=28.23 Aligned_cols=26 Identities=4% Similarity=-0.234 Sum_probs=11.6
Q ss_pred HHHHHHHHHHHhcchhHHHHHHHhhH
Q 005043 571 YESKMAALIRKNGILEGQLAAALVNR 596 (717)
Q Consensus 571 ~~~~~~~~~~~~~~~~~~~~~~~~~~ 596 (717)
.|.++..+-.++..||.+|...-+.-
T Consensus 10 ~~~~~~~Lq~~~~~LE~~l~e~E~~~ 35 (95)
T 3mov_A 10 RENLYFQGQKESRACLERIQELEDLL 35 (95)
T ss_dssp --------CCCCHHHHHHHHHHHHHH
T ss_pred HhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45566666666777777776655433
No 433
>2ic9_A Nucleocapsid protein; hantavirus, bunyaviridae, ssRNA negative- strand viruses, antiparallel coiled coil, viral protein; 2.00A {Sin nombre virus}
Probab=40.81 E-value=86 Score=26.44 Aligned_cols=38 Identities=24% Similarity=0.261 Sum_probs=26.5
Q ss_pred HHHHHHHhcchhHHHHHHHhhHHHHHh---------hhhhHHhhHHHH
Q 005043 575 MAALIRKNGILEGQLAAALVNREAAEK---------NFSSVLKSRQEM 613 (717)
Q Consensus 575 ~~~~~~~~~~~~~~~~~~~~~~~~~e~---------~~~~~~~~~~~~ 613 (717)
|..|....-..|+||..|..-...|++ |++ .+++|+..
T Consensus 7 i~eLq~e~~~~E~QL~~A~QKLkdA~~~~e~DPDevNk~-~~~~R~~~ 53 (96)
T 2ic9_A 7 LKEVQDNITLHEQRLVTTRQKLKDAERAVELDPDDVNKS-TLQSRRAA 53 (96)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHH-HHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcHHHHH-HHHHHHHH
Confidence 444555566789999999988888877 443 35666654
No 434
>1t2k_D Cyclic-AMP-dependent transcription factor ATF-2; protein DNA complex, transcription/DNA complex; 3.00A {Homo sapiens} SCOP: h.1.3.1
Probab=39.86 E-value=48 Score=25.38 Aligned_cols=29 Identities=28% Similarity=0.226 Sum_probs=13.7
Q ss_pred HhhhhhHHhhHHHHHHHHHHHHHHHHHHH
Q 005043 600 EKNFSSVLKSRQEMEKKLADSLKEMELLK 628 (717)
Q Consensus 600 e~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 628 (717)
|+|-..+.++|+.=......+..+++.|.
T Consensus 7 erNr~AA~k~R~rKk~~~~~Le~~~~~L~ 35 (61)
T 1t2k_D 7 ERNRAAASRSRQKRKVWVQSLEKKAEDLS 35 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45555556666544444444444433333
No 435
>3ter_A Mammalian stromal interaction molecule-1; dimer, metal binding protein; 2.55A {Caenorhabditis elegans}
Probab=39.58 E-value=1.3e+02 Score=26.99 Aligned_cols=60 Identities=15% Similarity=0.287 Sum_probs=35.6
Q ss_pred HHhhHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhccccc---cccc--CCc-cchhhHHHHHHHHHHHHHHhhh
Q 005043 606 VLKSRQEMEKKLADSLKEMELLKEKLAGLELAQEEANSLSN---IVHS--DNV-RLEHDVAFLKAVLDDTQKELHS 675 (717)
Q Consensus 606 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~---~~~~--~~~-~~~~~~~~~~~~~~~~~~~~~~ 675 (717)
...-||..+++|..+-++.|.||.|= +++=- +.|+ ..+ -++|-|-=+|+-|.+...+|+-
T Consensus 50 ~~~kk~~Aekql~~Ake~~eKlkKKr----------sSv~gs~~~aHs~~sslD~vD~~Il~Ak~aL~evt~~l~E 115 (136)
T 3ter_A 50 LEKQRQDCFKEMKEAIEMVDRLQKKQ----------GSVLSSLKLATGAASTSDQVDSKIFALKSRMEKIHTLTRE 115 (136)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHC----------------CCCCCCSSCCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHccccHHHHHHHHHHHHHHHHHhh----------hchheeeeeecCCCCchHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34556777777777777777777662 33322 3455 322 2346677788889998877753
No 436
>3iyk_A VP5; icosahedral virus; HET: MNA; 7.00A {Bluetongue virus}
Probab=39.47 E-value=49 Score=36.04 Aligned_cols=42 Identities=24% Similarity=0.232 Sum_probs=35.5
Q ss_pred hhHHHHHHHhhHHHHHhhhhhHHhhHHHHHHHHHHHHHHHHH
Q 005043 585 LEGQLAAALVNREAAEKNFSSVLKSRQEMEKKLADSLKEMEL 626 (717)
Q Consensus 585 ~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~ 626 (717)
-|.++..-+...|..+|+-...++--.++++|..+.++++-.
T Consensus 91 gE~~~~~Kl~eLE~e~k~d~~~~khn~~I~~k~g~~l~~v~~ 132 (526)
T 3iyk_A 91 GERGIQAKLKELEDEQRNELVRLKYNDKIKEKFGKELEEVYN 132 (526)
T ss_pred hHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 377888999999999999988899999999998877776655
No 437
>1m1j_B Fibrinogen beta chain; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: d.171.1.1 h.1.8.1 PDB: 1ei3_B*
Probab=38.89 E-value=53 Score=35.93 Aligned_cols=102 Identities=25% Similarity=0.342 Sum_probs=0.0
Q ss_pred HHHHHHhhHHHHHhhhhhHHhhHHHHHHHHHHHHHHHHHHHHHH-hhhhhhhhhhcccccccccCCccchhhHHHHHHHH
Q 005043 588 QLAAALVNREAAEKNFSSVLKSRQEMEKKLADSLKEMELLKEKL-AGLELAQEEANSLSNIVHSDNVRLEHDVAFLKAVL 666 (717)
Q Consensus 588 ~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 666 (717)
+|++-|. ..|+++-.-++.-+..-..|++...+...|-+.| +.++..|++.+++-++|..-+..||+=.+++|.++
T Consensus 86 ~l~D~L~---k~q~~V~~~LqeLe~~l~~lsn~Ts~~~~~i~~Iq~slk~~Q~Qi~en~n~~~~~~~~~e~~~~~i~~~~ 162 (464)
T 1m1j_B 86 ELQTTLL---KQEKTVKPVLRDLKDRVAKFSDTSTTMYQYVNMIDNKLVKTQKQRKDNDIILSEYNTEMELHYNYIKDNL 162 (464)
T ss_dssp HHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHH---HhhhhhHhHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhhcccccccchhhHHHHHHHHHHHHHHHHHHHH
Q ss_pred H-HHHHHhhhhccchhhccccceeeEEEeehhhhhhhhhcc
Q 005043 667 D-DTQKELHSTRGVLAGERARAFQLQVEVFHLKQRLQSLEN 706 (717)
Q Consensus 667 ~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 706 (717)
+ .....|..-+.+| -+|+++||.||.
T Consensus 163 ~~~~~~~i~~L~~~~--------------~~l~~ki~~l~~ 189 (464)
T 1m1j_B 163 DNNIPSSLRVLRAVI--------------DSLHKKIQKLEN 189 (464)
T ss_dssp HTHHHHHHHHHHHHH--------------HHHHHHHHHHHH
T ss_pred hccchhHHHHHHHHH--------------HHHHHHHHHHHH
No 438
>3qh9_A Liprin-beta-2; coiled-coil, dimerization, structural protein; 2.01A {Homo sapiens}
Probab=38.79 E-value=1.4e+02 Score=24.24 Aligned_cols=56 Identities=16% Similarity=0.165 Sum_probs=33.2
Q ss_pred HHHHHHhcchhHHHHHHHhhHHHHHhhhhhHHhhHHHHHHHHHHHHHHHHHHHHHH
Q 005043 576 AALIRKNGILEGQLAAALVNREAAEKNFSSVLKSRQEMEKKLADSLKEMELLKEKL 631 (717)
Q Consensus 576 ~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 631 (717)
..||+.--.|.-.+...--+|-|-||+|.+-=..-+.+.+.|+....|++-|+++|
T Consensus 22 E~L~qEi~~Lr~kv~elEnErlQyEkKLKsTK~El~~Lq~qLe~kd~ei~rL~~~l 77 (81)
T 3qh9_A 22 EELLQELRHLKIKVEELENERNQYEWKLKATKAEVAQLQEQVALKDAEIERLHSQL 77 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 35666666666666666666666666666555555555555555555555555554
No 439
>1t3j_A Mitofusin 1; coiled coil antiparallel, dimer, membrane protein; 2.50A {Mus musculus} SCOP: h.4.16.1
Probab=38.69 E-value=26 Score=29.67 Aligned_cols=52 Identities=21% Similarity=0.252 Sum_probs=34.3
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhcccccccccCCccchhhHHHHHHHHHHHHH
Q 005043 609 SRQEMEKKLADSLKEMELLKEKLAGLELAQEEANSLSNIVHSDNVRLEHDVAFLKAVLDDTQK 671 (717)
Q Consensus 609 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 671 (717)
=.++.+.-..+...|+..|..+|+.+|.+|.++.-|.| .-.||-.-|++-++
T Consensus 41 Lc~~Vd~t~~eL~~EI~~L~~eI~~LE~iqs~aK~LRn-----------KA~~L~~eLe~F~~ 92 (96)
T 1t3j_A 41 LCQQVDMTQKHLEEEIARLSKEIDQLEKMQNNSKLLRN-----------KAVQLESELENFSK 92 (96)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHH-----------HHHHHHHHHHHHHH
Confidence 34555555666667777788888888988888887643 34455555555444
No 440
>3fpp_A Macrolide-specific efflux protein MACA; hexameric assembly, membrane fusion protein, drug efflux pump, periplasmic protein; 2.99A {Escherichia coli}
Probab=38.52 E-value=89 Score=32.06 Aligned_cols=35 Identities=17% Similarity=0.050 Sum_probs=20.1
Q ss_pred HHHHHHHHHHHHhcchhHHHHHHHhhHHHHHhhhh
Q 005043 570 FYESKMAALIRKNGILEGQLAAALVNREAAEKNFS 604 (717)
Q Consensus 570 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~ 604 (717)
.++.+++.+-..-..++.||+.|.+..+.|++.+.
T Consensus 66 ~~~~~~~~~~a~l~~~~a~l~~a~~~~~~a~~~~~ 100 (341)
T 3fpp_A 66 QAENQIKEVEATLMELRAQRQQAEAELKLARVTYS 100 (341)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444554444445566677777666666665543
No 441
>3tnu_A Keratin, type I cytoskeletal 14; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}
Probab=38.42 E-value=1.1e+02 Score=27.23 Aligned_cols=34 Identities=15% Similarity=0.042 Sum_probs=22.2
Q ss_pred HHHHHHHHHHHHHHhcchhHHHHHHHhhHHHHHh
Q 005043 568 YQFYESKMAALIRKNGILEGQLAAALVNREAAEK 601 (717)
Q Consensus 568 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~ 601 (717)
+|..+.++..+...+..||.+|+.+-..-+..-+
T Consensus 47 iq~L~~el~~l~~~~~sLE~~l~e~e~~~~~~l~ 80 (131)
T 3tnu_A 47 MQNLEIELQSQLSMKASLENSLEETKGRYCMQLA 80 (131)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHH
Confidence 3667777777777777777777766554444333
No 442
>3gpv_A Transcriptional regulator, MERR family; protein structure initiative II(PSI II), NYSGXRC, structural genomics; 1.90A {Bacillus thuringiensis serovarkonkukian}
Probab=38.18 E-value=83 Score=28.54 Aligned_cols=71 Identities=13% Similarity=0.152 Sum_probs=34.5
Q ss_pred HHhcchhHHHHHHHhhHHH----HHhhhhhHHhhHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhccccccccc
Q 005043 580 RKNGILEGQLAAALVNREA----AEKNFSSVLKSRQEMEKKLADSLKEMELLKEKLAGLELAQEEANSLSNIVHS 650 (717)
Q Consensus 580 ~~~~~~~~~~~~~~~~~~~----~e~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 650 (717)
+..|.-=.+....+...++ .+..+..+-+-+++++++++++.+-.+.|.++++-.|.+.++..+-.|-||.
T Consensus 70 r~~G~sL~eIk~~l~~~~~~~~~~~~~~~~l~~~~~~l~~~i~~L~~~~~~L~~~i~~~~~~~~~~~~~~~~~~~ 144 (148)
T 3gpv_A 70 KNTGMPIQKIKQFIDWSMEGDSTILHRLKLMKQQEANVLQLIQDTEKNLKKIQQKIAKYEDEISSANATTKEGHH 144 (148)
T ss_dssp HTTTCCHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC----------------
T ss_pred HHcCCCHHHHHHHHHhhhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCCCC
Confidence 4445443444444443222 2333445566777888888888888888888888888877776666666553
No 443
>4fi5_A Nucleoprotein; structural genomics, niaid, national institute of allergy AN infectious diseases; 2.20A {Hantaan virus}
Probab=38.11 E-value=1.1e+02 Score=26.42 Aligned_cols=60 Identities=32% Similarity=0.330 Sum_probs=34.3
Q ss_pred HHHHHHHhcchhHHHHHHHhhHHHHHh---------hhhhHHhhHHHHHHHHHHHHHHHHHHHHHHhhhhhhh
Q 005043 575 MAALIRKNGILEGQLAAALVNREAAEK---------NFSSVLKSRQEMEKKLADSLKEMELLKEKLAGLELAQ 638 (717)
Q Consensus 575 ~~~~~~~~~~~~~~~~~~~~~~~~~e~---------~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 638 (717)
|..|....-..|+||..|..-...||+ |++ .+++|+..=.-|.+.+.| ||.-||.+-.++
T Consensus 24 ieeLq~Ei~~~E~QL~~ArQKLkdA~~~~e~DPDevNK~-tl~~R~~~Vs~lq~Kiae---LKrqLAd~va~~ 92 (113)
T 4fi5_A 24 MEELQREINAHEGQLVIARQKVRDAEKQYEKDPDELNKR-TLTDREGVAVSIQAKIDE---LKRQLADRIATG 92 (113)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHH-HHHHHHHHHHHHHHHHHH---HHHHHHHHHHC-
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcHHHHH-HHHHHHHHHHHHHHHHHH---HHHHHHHHHHhc
Confidence 344444555689999999988888877 443 456666543333333322 344444444344
No 444
>2wt7_A Proto-oncogene protein C-FOS; transcription, transcription regulation, nucleus, activator, repressor, DNA-binding, phosphoprotein, differentiation; 2.30A {Mus musculus} PDB: 1fos_E* 1a02_F* 1s9k_D
Probab=38.06 E-value=1.1e+02 Score=23.45 Aligned_cols=37 Identities=19% Similarity=0.222 Sum_probs=21.6
Q ss_pred HHhhhhhHHhhHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 005043 599 AEKNFSSVLKSRQEMEKKLADSLKEMELLKEKLAGLE 635 (717)
Q Consensus 599 ~e~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 635 (717)
-|+|--.|.++|+.=...+.++..+++.|+..-+.+.
T Consensus 7 rerNR~AA~rcR~rKk~~~~~Le~~v~~L~~~n~~L~ 43 (63)
T 2wt7_A 7 RERNKMAAAKCRNRRRELTDTLQAETDQLEDEKSALQ 43 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3556666777776655555555555555555444433
No 445
>1l8d_A DNA double-strand break repair RAD50 ATPase; zinc finger, DNA repair, recombination, HOOK motif, replication; HET: DNA CIT; 2.20A {Pyrococcus furiosus} SCOP: h.4.12.1
Probab=37.74 E-value=1.5e+02 Score=25.14 Aligned_cols=71 Identities=14% Similarity=0.155 Sum_probs=39.3
Q ss_pred HHHHHHHHHHHHHhcchhHHHHHHHhhHHHHHh----------hhhh--HHhhHHHHHHHHHHHHHHHHHHHHHHhhhhh
Q 005043 569 QFYESKMAALIRKNGILEGQLAAALVNREAAEK----------NFSS--VLKSRQEMEKKLADSLKEMELLKEKLAGLEL 636 (717)
Q Consensus 569 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~----------~~~~--~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 636 (717)
+.+..++..|-.+-..++.++..........++ .+.. .-....+.+.++.++..+++.|+++++.++.
T Consensus 13 ~~~~~~l~~L~~~~~~l~~~i~~l~~~l~~l~~~g~~CPvCgs~l~~~~~~~~i~~~~~~l~~l~~~i~~l~~~i~~l~~ 92 (112)
T 1l8d_A 13 TTIEEERNEITQRIGELKNKIGDLKTAIEELKKAKGKCPVCGRELTDEHREELLSKYHLDLNNSKNTLAKLIDRKSELER 92 (112)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECTTTCCEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445556666666666666666665555555554 1111 1123445566666666666667776666665
Q ss_pred hhh
Q 005043 637 AQE 639 (717)
Q Consensus 637 ~~~ 639 (717)
..+
T Consensus 93 ~~~ 95 (112)
T 1l8d_A 93 ELR 95 (112)
T ss_dssp HHH
T ss_pred HHH
Confidence 443
No 446
>1hjb_A Ccaat/enhancer binding protein beta; transcription/DNA, protein-DNA complex; HET: DNA; 3.0A {Homo sapiens} SCOP: h.1.3.1
Probab=37.34 E-value=96 Score=25.75 Aligned_cols=14 Identities=14% Similarity=0.472 Sum_probs=7.7
Q ss_pred chhhHHHHHHHHHH
Q 005043 655 LEHDVAFLKAVLDD 668 (717)
Q Consensus 655 ~~~~~~~~~~~~~~ 668 (717)
|+.||.+||.+|-+
T Consensus 62 L~~E~~~Lr~ll~~ 75 (87)
T 1hjb_A 62 LSRELSTLRNLFKQ 75 (87)
T ss_dssp HHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHH
Confidence 34556666655554
No 447
>2i1j_A Moesin; FERM, coiled-coil, C-ermad, ERM, radixin, ezrin, MER actin binding, masking, regulation, SELF-inhibition, cell A membrane protein; 2.10A {Spodoptera frugiperda} PDB: 2i1k_A 1e5w_A
Probab=37.22 E-value=19 Score=40.73 Aligned_cols=42 Identities=17% Similarity=0.174 Sum_probs=5.1
Q ss_pred HHHHhhhhhHHhhHHHHHHHHHHHHHHHHHHHHHHhhhhhhh
Q 005043 597 EAAEKNFSSVLKSRQEMEKKLADSLKEMELLKEKLAGLELAQ 638 (717)
Q Consensus 597 ~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 638 (717)
..|...|....+.-++|++|+..+.+|.++|..|-..+|.+.
T Consensus 352 ~~~~~~l~~~~~~~~~l~e~~~~~~~e~~~l~~~~~~~e~~~ 393 (575)
T 2i1j_A 352 ERSQANLLEAQDMILRLEEQLRQLQAAKEELEQRQNELQAMM 393 (575)
T ss_dssp HHHHHHHHHHHHC-----------------------------
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333333444444555555555555555555554444443
No 448
>3ryc_E Stathmin-4; alpha-tubulin, beta-tubulin, GTPase, microtubule, tubulin, cell cycle; HET: GTP GDP; 2.10A {Rattus norvegicus} SCOP: a.137.10.1 PDB: 3ryf_E* 3ryh_E* 3ryi_E* 3ut5_E* 4eb6_E* 1sa0_E* 1sa1_E* 1z2b_E* 3du7_E* 3e22_E* 3hkb_E* 3hkc_E* 3hkd_E* 3hke_E* 3n2g_E* 3n2k_E*
Probab=36.66 E-value=1.7e+02 Score=26.51 Aligned_cols=33 Identities=18% Similarity=0.248 Sum_probs=26.2
Q ss_pred HHHHHHHHHHHHHhcchhHHHHHHHhhHHHHHh
Q 005043 569 QFYESKMAALIRKNGILEGQLAAALVNREAAEK 601 (717)
Q Consensus 569 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~ 601 (717)
..-+.|+.++-.|--.+|+|+-+.|+.+-+-|+
T Consensus 46 eEIqkKLeAAEERRks~Ea~~lk~laekrehe~ 78 (143)
T 3ryc_E 46 EEIQKKLEAAEERRKYQEAELLKHLAEKREHER 78 (143)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Confidence 456788888888888899999999988866555
No 449
>1w8o_A Bacterial sialidase; 3D-structure, glycosidase, hydrolase, beta- propeller; HET: LBT CIT; 1.70A {Micromonospora viridifaciens} SCOP: b.1.18.2 b.18.1.1 b.68.1.1 PDB: 1w8n_A* 1eut_A 1euu_A* 1wcq_A* 2bzd_A* 2ber_A* 1eur_A 1eus_A*
Probab=36.46 E-value=4.7e+02 Score=28.80 Aligned_cols=128 Identities=9% Similarity=0.018 Sum_probs=57.0
Q ss_pred CCceEeccCCCCCCCCCcccEEEEECCcEEEEEcCCCCCCCCCeEEEE-EC-CCCcEEEeecCCCCCCCCcceEEEEE--
Q 005043 233 SLTWLPLHCTGTGPSPRSNHVAALYDDKNLLIFGGSSKSKTLNDLYSL-DF-ETMIWTRIKIRGFHPSPRAGCCGVLC-- 308 (717)
Q Consensus 233 t~~W~~l~~~g~~P~~R~~~aa~~~~~~~lyV~GG~~~~~~~ndv~~y-d~-~t~~W~~v~~~g~~P~~R~~~sav~~-- 308 (717)
..+|+... .++.....+.++...+..|+++.-.... .....++ .. ...+|+.+.....+|.+.+..+++.+
T Consensus 199 G~TW~~~~---~~~~~~~~~~v~~~~dG~l~~~~r~~~~--~~~~~~~~S~DgG~tW~~~~~~~~l~~p~~~~s~~~~~~ 273 (601)
T 1w8o_A 199 GRTWRAGE---AVGVGMDENKTVELSDGRVLLNSRDSAR--SGYRKVAVSTDGGHSYGPVTIDRDLPDPTNNASIIRAFP 273 (601)
T ss_dssp TSSCEECC---CBCSSCCSEEEEECTTSCEEEEECCTTC--CSEEEEEEESSTTSCCCCCEEEEEEECSSCCCEEEESST
T ss_pred CcCccCCC---CCCCCCCcCEEEEeCCCEEEEEEeCCCC--CCCEEEEEEcCCCCCCCCCeecCcCCCCCccceEEEecc
Confidence 56899875 2232333445555554447775433211 1122222 22 34689876431122334443344332
Q ss_pred -------CCEEEEEecCCCCCcc--CeEEEEECCCCcEEEeecCCCCCCCCCcceEEEEEEeCCCcEEEEEc
Q 005043 309 -------GTKWYIAGGGSRKKRH--AETLIFDILKGEWSVAITSPSSSVTSNKGFTLVLVQHKEKDFLVAFG 371 (717)
Q Consensus 309 -------~~~IyV~GG~~~~~~~--~dv~~yD~~t~~W~~l~~~p~~~~~~r~g~s~v~v~~~~~~~I~v~G 371 (717)
++.++++++......- ..+++-.-...+|....... ....+++.++... ++.|+++.
T Consensus 274 ~~~~~~~~~~~l~~~~~~~~~~R~~~~l~~S~D~G~tW~~~~~l~----~~~~~Y~~l~~~~--dg~i~~~y 339 (601)
T 1w8o_A 274 DAPAGSARAKVLLFSNAASQTSRSQGTIRMSCDDGQTWPVSKVFQ----PGSMSYSTLTALP--DGTYGLLY 339 (601)
T ss_dssp TCCTTCSGGGCEEEEEECCSSSSEEEEEEEESSTTSCCCEEEEEE----EEECCCEEEEECT--TSCEEEEE
T ss_pred cccCCCCCCCEEEEECCCCCCcccceEEEEeCCCCCCCCCceEeC----CCCCCCCeEEEcC--CCeEEEEE
Confidence 2344555543221111 12333333456787754211 1335566555432 44565554
No 450
>1hxn_A Hemopexin, HPX; heme, binding protein; 1.80A {Oryctolagus cuniculus} SCOP: b.66.1.1
Probab=36.06 E-value=1e+02 Score=30.04 Aligned_cols=107 Identities=17% Similarity=0.212 Sum_probs=55.5
Q ss_pred ECCcEEEEEcCCCCCCCCCeEEEEECCCCcE--EEeecC-CCCCCCCcceEEEEECCEEEEEecCCCCCccCeEEEEECC
Q 005043 257 YDDKNLLIFGGSSKSKTLNDLYSLDFETMIW--TRIKIR-GFHPSPRAGCCGVLCGTKWYIAGGGSRKKRHAETLIFDIL 333 (717)
Q Consensus 257 ~~~~~lyV~GG~~~~~~~ndv~~yd~~t~~W--~~v~~~-g~~P~~R~~~sav~~~~~IyV~GG~~~~~~~~dv~~yD~~ 333 (717)
.+++ +|+|=|. ..|+++.....+ ..+... +.+| ..--++...++++|+|-| +.+|+|+..
T Consensus 27 ~~g~-~yfFkg~-------~~Wr~~~~~~~~~p~~Is~~wpgLP--~~IDAA~~~~~~~yfFkG-------~~yw~~~~~ 89 (219)
T 1hxn_A 27 NHGA-TYVFSGS-------HYWRLDTNRDGWHSWPIAHQWPQGP--STVDAAFSWEDKLYLIQD-------TKVYVFLTK 89 (219)
T ss_dssp TTSC-EEEEETT-------EEEESSSSSCTTCCEEGGGTCTTSC--SSCSEEEEETTEEEEEET-------TEEEEEECS
T ss_pred CCCc-EEEEeCC-------EEEEEcCCCCCCCceEhhhhccCCC--CCccEEEEECCcEEEecC-------CEEEEEeCC
Confidence 3566 8888763 467776543222 112211 1123 222344556999999988 468999865
Q ss_pred CCcEEEeecCCCC------CCCC--CcceEEEEEEeCCCcEEEEEcCCCCCCCCeEEEEEccC
Q 005043 334 KGEWSVAITSPSS------SVTS--NKGFTLVLVQHKEKDFLVAFGGIKKEPSNQVEVLSIEK 388 (717)
Q Consensus 334 t~~W~~l~~~p~~------~~~~--r~g~s~v~v~~~~~~~I~v~GG~~~~~~n~v~vyd~~~ 388 (717)
++ .+...-.|.. .|.. ...--+++. ....+++|+|-|. ..|.||..+
T Consensus 90 ~~-~~~~~gyPk~i~~~~G~p~~~~~~~IDAA~~-~~~~gk~yfFkG~------~ywr~d~~~ 144 (219)
T 1hxn_A 90 GG-YTLVNGYPKRLEKELGSPPVISLEAVDAAFV-CPGSSRLHIMAGR------RLWWLDLKS 144 (219)
T ss_dssp SS-CEECTTCCEEHHHHHCCCSSCCCSCCCEEEC-CTTCCEEEEEETT------EEEEEEGGG
T ss_pred CC-ceecCCCCeehhhccCCCCcccccccceeEE-ecCCCEEEEEeCC------EEEEEeCCC
Confidence 32 1221111100 1111 111222222 2346788999885 789999765
No 451
>2p9w_A MAL S 1 allergenic protein; beta propeller; 1.35A {Malassezia sympodialis}
Probab=35.78 E-value=3.9e+02 Score=27.68 Aligned_cols=151 Identities=15% Similarity=0.117 Sum_probs=73.6
Q ss_pred EEEEEECCCCcEEEeeecCC---CCCCceeeEEEEE----CCEEEEEccc----cCCC---CCcCcEEEEEcC---CC--
Q 005043 174 SVWTFDTETECWSVVEAKGD---IPVARSGHTVVRA----SSVLILFGGE----DGKR---RKLNDLHMFDLK---SL-- 234 (717)
Q Consensus 174 ~v~~yD~~t~~W~~l~~~g~---~P~~R~~hs~~~~----~~~Lyv~GG~----~~~~---~~~~~v~~yD~~---t~-- 234 (717)
.|..||+..+.-..+...+- ........++.+. .++|+++--. ...+ .-.+.+.+||+. ++
T Consensus 36 ~V~~~~~~~~~~~~~~~~~~s~~g~~~~~~sGl~~~~~D~~grL~vv~~~~~af~~~g~~~~g~~~v~~~Dl~~~~tg~~ 115 (334)
T 2p9w_A 36 RIEVYNPKTQSHFNVVIDGASSNGDGEQQMSGLSLLTHDNSKRLFAVMKNAKSFNFADQSSHGASSFHSFNLPLSENSKP 115 (334)
T ss_dssp EEEEECTTTCCEEEECCTTTCCSSCCSEEEEEEEESSSSSCCEEEEEEEETTTTCTTSCCSSSCCEEEEEESSCCTTCCC
T ss_pred EEEEEcCCCCeEEEEecCCccccCCCcceeeEEEEeccCCCCcEEEEEcccccccccccccCCCCEEEEEcCCcCCCCCE
Confidence 68999998665444432110 1111222444452 4688886211 0001 113669999988 44
Q ss_pred ceEeccCCCCCCC-----C-Cc-cc-EEEEECCcEEEEEcCCCCCCCCCeEEEEECCCCcEEEeecCCCCCCCCcceEE-
Q 005043 235 TWLPLHCTGTGPS-----P-RS-NH-VAALYDDKNLLIFGGSSKSKTLNDLYSLDFETMIWTRIKIRGFHPSPRAGCCG- 305 (717)
Q Consensus 235 ~W~~l~~~g~~P~-----~-R~-~~-aa~~~~~~~lyV~GG~~~~~~~ndv~~yd~~t~~W~~v~~~g~~P~~R~~~sa- 305 (717)
.|..- ..+.... + ++ .+ -+++-.+..+||.+.... ..|++++++...-.........+..+.+...
T Consensus 116 ~~~~d-L~~~~~~~~~~~g~~~~~~nDvavD~~GnaYVt~s~~~----~~I~rV~pdG~~~~~~~~~~~~~~~~~G~nGI 190 (334)
T 2p9w_A 116 VWSVN-FEKVQDEFEKKAGKRPFGVVQSAQDRDGNSYVAFALGM----PAIARVSADGKTVSTFAWESGNGGQRPGYSGI 190 (334)
T ss_dssp SEEEE-SHHHHHHHHHHHSSCCEEEEEEEECTTSCEEEEEEESS----CEEEEECTTSCCEEEEEECCCCSSSCCSCSEE
T ss_pred EEEec-CccccccccccccccccCCceeEECCCCCEEEeCCCCC----CeEEEEeCCCCEEeeeeecCCCcccccCcceE
Confidence 35421 0000000 0 21 12 223333335899765431 4699999986532211111112334555544
Q ss_pred EEE--CCEEEEEecCCCCCccCeEEEEECCCC
Q 005043 306 VLC--GTKWYIAGGGSRKKRHAETLIFDILKG 335 (717)
Q Consensus 306 v~~--~~~IyV~GG~~~~~~~~dv~~yD~~t~ 335 (717)
+.. ++.|++..+ .+ .++.||+.+.
T Consensus 191 v~~pdg~~Liv~~~-~g-----~L~~fD~~~p 216 (334)
T 2p9w_A 191 TFDPHSNKLIAFGG-PR-----ALTAFDVSKP 216 (334)
T ss_dssp EEETTTTEEEEESS-SS-----SEEEEECSSS
T ss_pred EEeCCCCEEEEEcC-CC-----eEEEEcCCCC
Confidence 444 456777766 43 4999998853
No 452
>1jof_A Carboxy-CIS,CIS-muconate cyclase; beta-propeller, homotetramer, seMet-protein, isomerase; HET: PIN; 2.50A {Neurospora crassa} SCOP: b.69.10.1
Probab=35.63 E-value=3.6e+02 Score=27.17 Aligned_cols=16 Identities=19% Similarity=0.289 Sum_probs=11.3
Q ss_pred eEEEEEECC-CCcEEEe
Q 005043 173 VSVWTFDTE-TECWSVV 188 (717)
Q Consensus 173 ~~v~~yD~~-t~~W~~l 188 (717)
+.+++||+. +++...+
T Consensus 167 ~~v~~~~~~~~g~~~~~ 183 (365)
T 1jof_A 167 NKLWTHRKLASGEVELV 183 (365)
T ss_dssp TEEEEEEECTTSCEEEE
T ss_pred CEEEEEEECCCCCEEEe
Confidence 368889987 7766543
No 453
>2lw1_A ABC transporter ATP-binding protein UUP; ABC REG subfamily, DNA binding protein; NMR {Escherichia coli}
Probab=35.46 E-value=1.1e+02 Score=25.26 Aligned_cols=23 Identities=17% Similarity=0.033 Sum_probs=11.0
Q ss_pred hcchhHHHHHHHhhHHHHHhhhh
Q 005043 582 NGILEGQLAAALVNREAAEKNFS 604 (717)
Q Consensus 582 ~~~~~~~~~~~~~~~~~~e~~~~ 604 (717)
.+.|+++++..-+..++++..|+
T Consensus 24 le~le~~Ie~LE~~i~~le~~la 46 (89)
T 2lw1_A 24 LEQLPQLLEDLEAKLEALQTQVA 46 (89)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHh
Confidence 34445555444444445554443
No 454
>3teq_A Stromal interaction molecule 1; signaling protein; 1.90A {Homo sapiens}
Probab=34.88 E-value=1.6e+02 Score=25.14 Aligned_cols=60 Identities=23% Similarity=0.316 Sum_probs=42.6
Q ss_pred hHHhhHHHHHHHHHHHHHHHHHHHHHH----hhhhhhhhhhcccccccccCCc-cchhhHHHHHHHHHHHHHHhhh
Q 005043 605 SVLKSRQEMEKKLADSLKEMELLKEKL----AGLELAQEEANSLSNIVHSDNV-RLEHDVAFLKAVLDDTQKELHS 675 (717)
Q Consensus 605 ~~~~~~~~~~~~~~~~~~~~~~l~~~~----~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~ 675 (717)
-...-|+..|++|..+-++.|.||.|= ...-+| ||..+ -++|-|-=+|+-|++...+|+-
T Consensus 18 ~~~~kk~~aekql~~A~e~~eKl~KKrsS~~gs~~~a-----------hs~slD~vD~~Il~Ak~aL~evt~~l~E 82 (101)
T 3teq_A 18 YYNIKKQNAEKQLMVAKEGAEKIKKKRNTLFGTFHVA-----------HSSSLDDVDHKILTAKQALSEATAALRE 82 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHH-----------TCGGGGGTTCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhhccHHHHHHHHHHHHHHHHHhhhchheeeehh-----------cCCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 346678888888888888999998883 233333 44332 2457788889999999988764
No 455
>3v4v_A Integrin alpha-4; cell adhesion, madcam-1, membrane; HET: NAG BMA MAN 0DU; 3.10A {Homo sapiens} PDB: 3v4p_A*
Probab=34.58 E-value=64 Score=36.54 Aligned_cols=135 Identities=15% Similarity=0.144 Sum_probs=75.2
Q ss_pred CcccEEEEECCcEEEEEcCCCCCCCCCeEEEEECCCCcEEEeecCC--CCCCCCcceEEEEE-----CCEEEEEecCCCC
Q 005043 249 RSNHVAALYDDKNLLIFGGSSKSKTLNDLYSLDFETMIWTRIKIRG--FHPSPRAGCCGVLC-----GTKWYIAGGGSRK 321 (717)
Q Consensus 249 R~~~aa~~~~~~~lyV~GG~~~~~~~ndv~~yd~~t~~W~~v~~~g--~~P~~R~~~sav~~-----~~~IyV~GG~~~~ 321 (717)
..++++...++ .+|+|.-........++.|+.....|....... .......+++++.. +..-+|+|.-..
T Consensus 166 q~G~Sa~~~~d--~~v~GApG~~~w~G~v~~~~~~~~~~~~~~~~~~~~~~~sy~GySva~gD~ngDG~~DlvvGAP~~- 242 (597)
T 3v4v_A 166 QAGISSFYTKD--LIVMGAPGSSYWTGSLFVYNITTNKYKAFLDKQNQVKFGSYLGYSVGAGHFRSQHTTEVVGGAPQH- 242 (597)
T ss_dssp CBTSSEEECSS--EEEEEETTHHHHTBEEEEEETTTTBCCBBCCTTCCSCTTCCBTSSEEEECSSCTTSCEEEEEETTG-
T ss_pred cCceeeEecCC--ceEEccccccccccceEEEEccCceeeecccccccccccCcCccEEEEEEECCCCCeEEEEecccc-
Confidence 34556555554 467786543334457899999999997643211 11124456666553 123566774322
Q ss_pred CccCeEEEEECCCCcEEEeecCCCCCCCCCcceEEEEEEeCCCcE-EEEEcCCCC---CCCCeEEEEEc
Q 005043 322 KRHAETLIFDILKGEWSVAITSPSSSVTSNKGFTLVLVQHKEKDF-LVAFGGIKK---EPSNQVEVLSI 386 (717)
Q Consensus 322 ~~~~dv~~yD~~t~~W~~l~~~p~~~~~~r~g~s~v~v~~~~~~~-I~v~GG~~~---~~~n~v~vyd~ 386 (717)
.....+++|......|.............++|.++++...++++. =+++|.-.. .....+++|--
T Consensus 243 ~~~G~V~v~~~~~~~~~~~~~l~G~~~g~~fG~sva~~D~ngDG~~DlvVGap~~~~~~~~G~v~vy~~ 311 (597)
T 3v4v_A 243 EQIGKAYIFSIDEKELNILHEMKGKKLGSYFGASVCAVDLNADGFSDLLVGAPMQSTIREEGRVFVYIN 311 (597)
T ss_dssp GGTCEEEEEEECSSSEEEEEEEECSSTTCCTTSEEEEECTTCSSSCEEEEEETTCCSSSCCCEEEEEEE
T ss_pred cCCceEEEEecCCCceeEEEEecccccCCCCcceEEEEeeCCCCCceEEEEcccccCCCcCCeEEEEEE
Confidence 234678999877778987655444444566788887664444332 124443211 12456777743
No 456
>1fxk_A Prefoldin; archaeal protein, chaperone; 2.30A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: a.2.5.1 PDB: 1fxk_B
Probab=34.52 E-value=97 Score=26.09 Aligned_cols=25 Identities=8% Similarity=0.092 Sum_probs=16.7
Q ss_pred cchhhHHHHHHHHHHHHHHhhhhcc
Q 005043 654 RLEHDVAFLKAVLDDTQKELHSTRG 678 (717)
Q Consensus 654 ~~~~~~~~~~~~~~~~~~~~~~~~~ 678 (717)
.||....+++..++++++.++..+.
T Consensus 69 ~L~~~~e~i~~~i~~le~~~~~~~~ 93 (107)
T 1fxk_A 69 ELQEKLETLQLREKTIERQEERVMK 93 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566677777777777776666543
No 457
>3kci_A Probable E3 ubiquitin-protein ligase HERC2; WD40, RCC1, structural genomics consortium, SGC, coiled coil, metal-binding, phosphoprotein; 1.80A {Homo sapiens}
Probab=34.41 E-value=4.1e+02 Score=27.50 Aligned_cols=18 Identities=22% Similarity=0.422 Sum_probs=13.2
Q ss_pred ccEEEEECCcEEEEEcCC
Q 005043 251 NHVAALYDDKNLLIFGGS 268 (717)
Q Consensus 251 ~~aa~~~~~~~lyV~GG~ 268 (717)
.|+++...+..+|.+|-.
T Consensus 223 ~~t~~l~~~G~v~~wG~n 240 (389)
T 3kci_A 223 AQTLCLTDDDTVWSWGDG 240 (389)
T ss_dssp CEEEEEETTTEEEEEECC
T ss_pred cEEEEEccCCEEEEEeCC
Confidence 577777777679999853
No 458
>2ocy_A RAB guanine nucleotide exchange factor SEC2; RAB, GEF, guanine exchange factor, coiled-coil, endocytosis/exocytosis complex; 3.30A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=34.38 E-value=2.8e+02 Score=25.50 Aligned_cols=26 Identities=19% Similarity=0.287 Sum_probs=12.5
Q ss_pred chhhHHHHHHHHHHHHHHhhhhccch
Q 005043 655 LEHDVAFLKAVLDDTQKELHSTRGVL 680 (717)
Q Consensus 655 ~~~~~~~~~~~~~~~~~~~~~~~~~~ 680 (717)
|+.-++=-..+|+..|.+|..-+.|+
T Consensus 120 L~~ql~e~~~~l~~lq~ql~~LK~v~ 145 (154)
T 2ocy_A 120 LTEQLREKDTLLDTLTLQLKNLKKVM 145 (154)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333334445555555555444443
No 459
>3hx6_A Type 4 fimbrial biogenesis protein PILY1; beta propeller, pilus protein, cell adhesion; 2.10A {Pseudomonas aeruginosa}
Probab=34.04 E-value=5.4e+02 Score=28.75 Aligned_cols=76 Identities=20% Similarity=0.156 Sum_probs=37.3
Q ss_pred EEEEEccccCCCCCcCcEEEEEcCC-----CceEeccC-CCCCCCCCcccEEEEE-CCcEEEEEc-CCCCCCCCCeEEEE
Q 005043 209 VLILFGGEDGKRRKLNDLHMFDLKS-----LTWLPLHC-TGTGPSPRSNHVAALY-DDKNLLIFG-GSSKSKTLNDLYSL 280 (717)
Q Consensus 209 ~Lyv~GG~~~~~~~~~~v~~yD~~t-----~~W~~l~~-~g~~P~~R~~~aa~~~-~~~~lyV~G-G~~~~~~~ndv~~y 280 (717)
+-|++||....+ ..+|.+|... -.|+.-.. ...|.........+.+ +++.+.||| |++...--..++++
T Consensus 152 rtvLvggmg~GG---~~~yALDVT~P~~p~~LWe~~~~~~~~LG~t~s~P~I~~~~~g~w~~vfG~GY~~~~~~~~Lyv~ 228 (570)
T 3hx6_A 152 HTVLIGSLRAGG---KGLFALDVTDPANIKLLWEIGVDQEPDLGYSFPKPTVARLHNGKWAVVTGNGYSSMNDKAALLII 228 (570)
T ss_dssp EEEEEEECTTSC---SEEEEEECSSGGGCEEEEEEETTTCTTCCBCCSCCEEEECTTSSEEEEEECCBSCTTCCEEEEEE
T ss_pred eEEEEEecCCCC---cEEEEEECCCCCCCceeEEECCCCccccCccccCCEEEEecCCCEEEEEccccCCCCCccEEEEE
Confidence 345566654433 2455555432 23553311 1123233333344444 345455555 55544334579999
Q ss_pred ECCCCcE
Q 005043 281 DFETMIW 287 (717)
Q Consensus 281 d~~t~~W 287 (717)
|.+++.-
T Consensus 229 d~~tG~l 235 (570)
T 3hx6_A 229 DMETGAI 235 (570)
T ss_dssp ETTTCCE
T ss_pred ECCCCce
Confidence 9998763
No 460
>1gk4_A Vimentin; intermediate filament, dimer, parallel coiled coil, heptad repeat, stutter; 2.3A {Homo sapiens} SCOP: h.1.20.1
Probab=33.93 E-value=1.3e+02 Score=24.61 Aligned_cols=28 Identities=25% Similarity=0.163 Sum_probs=18.2
Q ss_pred HHHHHHHHhcchhHHHHHHHhhHHHHHh
Q 005043 574 KMAALIRKNGILEGQLAAALVNREAAEK 601 (717)
Q Consensus 574 ~~~~~~~~~~~~~~~~~~~~~~~~~~e~ 601 (717)
++..+.-.+..||++|+.+-+.-+..-+
T Consensus 2 el~~l~~~~~sLE~~l~e~e~~~~~~~~ 29 (84)
T 1gk4_A 2 EVDALKGTNESLERQMREMEENFAVEAA 29 (84)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4556667777888888776655544433
No 461
>1p9i_A Cortexillin I/GCN4 hybrid peptide; coiled-coil, unknown function; 1.17A {Synthetic} SCOP: h.1.10.1
Probab=33.68 E-value=61 Score=20.57 Aligned_cols=16 Identities=44% Similarity=0.445 Sum_probs=10.9
Q ss_pred HHHHHHHhhHHHHHhh
Q 005043 587 GQLAAALVNREAAEKN 602 (717)
Q Consensus 587 ~~~~~~~~~~~~~e~~ 602 (717)
+||.|-|++.|+-.|.
T Consensus 2 dqlnallasleaenkq 17 (31)
T 1p9i_A 2 DQLNALLASLEAENKQ 17 (31)
T ss_dssp -CHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHH
Confidence 4788888888765543
No 462
>3tc9_A Hypothetical hydrolase; 6-bladed beta-propeller, immunoglobulin-like, structural GEN joint center for structural genomics, JCSG; 2.23A {Bacteroides thetaiotaomicron}
Probab=33.36 E-value=4.5e+02 Score=27.69 Aligned_cols=144 Identities=10% Similarity=0.156 Sum_probs=76.6
Q ss_pred CCEEEEEcccCCCCCcccEEEEEcCCCceEEccccccCCCCCCCCCCCcccceEEEEE--CCEEEEEeccCCCCCCceEE
Q 005043 98 GNKMIVVGGESGNGLLDDVQVLNFDRFSWTAASSKLYLSPSSLPLKIPACRGHSLISW--GKKVLLVGGKTDSGSDRVSV 175 (717)
Q Consensus 98 ~~~lyV~GG~~~~~~~~~v~~yd~~t~~W~~l~~~~~~~~~~~~~~~p~r~~hs~v~~--~~~Iyv~GG~~~~~~~~~~v 175 (717)
++.||+.--. ..+.+||+.++....+... . . .-..+++. ++.||+...... .....+
T Consensus 149 ~g~Lyv~d~~------~~I~~id~~~~~v~~~~~~---------~---~-~P~~ia~d~~G~~lyvad~~~~--~~~~~v 207 (430)
T 3tc9_A 149 HNHLYLVGEQ------HPTRLIDFEKEYVSTVYSG---------L---S-KVRTICWTHEADSMIITNDQNN--NDRPNN 207 (430)
T ss_dssp EEEEEEEEBT------EEEEEEETTTTEEEEEECC---------C---S-CEEEEEECTTSSEEEEEECCSC--TTSEEE
T ss_pred CCeEEEEeCC------CcEEEEECCCCEEEEEecC---------C---C-CcceEEEeCCCCEEEEEeCCCC--cccceE
Confidence 3678887432 5799999999888776531 1 1 11223332 355998864321 222346
Q ss_pred EEEECCCCcEE---EeeecCCCCCCceeeEEEEE--CCEEEEEccccCCCCCcCcEEEEEcCCCceEeccCCCCCCCCCc
Q 005043 176 WTFDTETECWS---VVEAKGDIPVARSGHTVVRA--SSVLILFGGEDGKRRKLNDLHMFDLKSLTWLPLHCTGTGPSPRS 250 (717)
Q Consensus 176 ~~yD~~t~~W~---~l~~~g~~P~~R~~hs~~~~--~~~Lyv~GG~~~~~~~~~~v~~yD~~t~~W~~l~~~g~~P~~R~ 250 (717)
..++... .|. .+.. .. ..+.+++. ++.||+.-- ..+.+++||+.+.....+...+....|+
T Consensus 208 ~~~~~~g-~~~~~~~l~~---~~---~p~giavdp~~g~lyv~d~------~~~~V~~~~~~~~~~~~~~~~~~~~~P~- 273 (430)
T 3tc9_A 208 YILTRES-GFKVITELTK---GQ---NCNGAETHPINGELYFNSW------NAGQVFRYDFTTQETTPLFTIQDSGWEF- 273 (430)
T ss_dssp EEEEGGG-TSCSEEEEEE---CS---SCCCEEECTTTCCEEEEET------TTTEEEEEETTTTEEEEEEECSSSSCCE-
T ss_pred EEEeCCC-ceeeeeeecc---CC---CceEEEEeCCCCEEEEEEC------CCCEEEEEECCCCcEEEEEEcCCCCcce-
Confidence 6666543 232 2221 22 22444444 578888732 2357999999877653332111221222
Q ss_pred ccEEEEE-CCcEEEEEcCCCCCCCCCeEEEEECC
Q 005043 251 NHVAALY-DDKNLLIFGGSSKSKTLNDLYSLDFE 283 (717)
Q Consensus 251 ~~aa~~~-~~~~lyV~GG~~~~~~~ndv~~yd~~ 283 (717)
.+++. +++.||+.--. .+.|++|+.+
T Consensus 274 --gia~~pdG~~lyv~d~~-----~~~I~~~~~d 300 (430)
T 3tc9_A 274 --HIQFHPSGNYAYIVVVN-----QHYILRSDYD 300 (430)
T ss_dssp --EEEECTTSSEEEEEETT-----TTEEEEEEEE
T ss_pred --eEEEcCCCCEEEEEECC-----CCEEEEEeCC
Confidence 23333 34458887432 3468887765
No 463
>1lwu_C Fibrinogen gamma chain; heterotrimer, protein-peptide complex, blood clotting; HET: NDG MAN NAG BMA GAL; 2.80A {Petromyzon marinus} SCOP: d.171.1.1 h.1.8.1 PDB: 1n73_C*
Probab=33.25 E-value=66 Score=33.45 Aligned_cols=46 Identities=15% Similarity=0.038 Sum_probs=0.0
Q ss_pred HHHHhhHHHHHhhhhhHHhhHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 005043 590 AAALVNREAAEKNFSSVLKSRQEMEKKLADSLKEMELLKEKLAGLE 635 (717)
Q Consensus 590 ~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 635 (717)
..-+..+++.|+.+..+-...++|+.+|....+.+..|+++|+.++
T Consensus 8 ~~~~~~~~~~e~~i~~~~~~i~~L~~~l~~~~~~i~~l~~~i~~l~ 53 (323)
T 1lwu_C 8 QKILEEVRILEQIGVSHDAQIQELSEMWRVNQQFVTRLQQQLVDIR 53 (323)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 464
>1kd8_B GABH BLL, GCN4 acid base heterodimer base-D12LA16L; coiled coil heterodimer, de novo protein; 1.90A {Synthetic} SCOP: h.1.3.1 PDB: 1kd9_B 1kdd_B
Probab=33.20 E-value=52 Score=22.44 Aligned_cols=20 Identities=20% Similarity=0.332 Sum_probs=9.1
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 005043 612 EMEKKLADSLKEMELLKEKL 631 (717)
Q Consensus 612 ~~~~~~~~~~~~~~~l~~~~ 631 (717)
|+|.|+.+.+.+...|+-++
T Consensus 5 QLE~KVEeLl~~~~~Le~eV 24 (36)
T 1kd8_B 5 QLKAKVEELKSKLWHLKNKV 24 (36)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhHHHHHHH
Confidence 44555554444444443333
No 465
>3fpp_A Macrolide-specific efflux protein MACA; hexameric assembly, membrane fusion protein, drug efflux pump, periplasmic protein; 2.99A {Escherichia coli}
Probab=33.06 E-value=42 Score=34.60 Aligned_cols=20 Identities=25% Similarity=0.358 Sum_probs=8.8
Q ss_pred hhHHHHHHHhhHHHHHhhhh
Q 005043 585 LEGQLAAALVNREAAEKNFS 604 (717)
Q Consensus 585 ~~~~~~~~~~~~~~~e~~~~ 604 (717)
++.+|+.+.+..++|+.++.
T Consensus 74 ~~a~l~~~~a~l~~a~~~~~ 93 (341)
T 3fpp_A 74 VEATLMELRAQRQQAEAELK 93 (341)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444433
No 466
>1gqe_A Release factor 2, RF2; protein synthesis, ribosome, macromolecular mimicry, translation; 1.81A {Escherichia coli} SCOP: e.38.1.1 PDB: 1mi6_A 1ml5_Z*
Probab=32.85 E-value=1e+02 Score=32.57 Aligned_cols=14 Identities=14% Similarity=0.090 Sum_probs=6.2
Q ss_pred HHHHHhcchhHHHH
Q 005043 577 ALIRKNGILEGQLA 590 (717)
Q Consensus 577 ~~~~~~~~~~~~~~ 590 (717)
.+..+.+.||.+++
T Consensus 29 ~~~~r~~el~~~~~ 42 (365)
T 1gqe_A 29 AKKERLEEVNAELE 42 (365)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhc
Confidence 34444444444443
No 467
>2l5g_B Putative uncharacterized protein NCOR2, G protein pathway suppressor 2; GPS2, SMRT, TBL1, CO-repressor, transcription regulator; NMR {Homo sapiens}
Probab=32.35 E-value=38 Score=24.06 Aligned_cols=27 Identities=15% Similarity=0.361 Sum_probs=12.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhhhhh
Q 005043 612 EMEKKLADSLKEMELLKEKLAGLELAQ 638 (717)
Q Consensus 612 ~~~~~~~~~~~~~~~l~~~~~~~~~~~ 638 (717)
++=.|+..+.+|++.-++||+.+...|
T Consensus 6 ~l~qkI~kVdrEI~Kte~kI~~lqkKl 32 (42)
T 2l5g_B 6 ELIQNMDRVDREITMVEQQISKLKKKQ 32 (42)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444445555555555555444443
No 468
>1l8d_A DNA double-strand break repair RAD50 ATPase; zinc finger, DNA repair, recombination, HOOK motif, replication; HET: DNA CIT; 2.20A {Pyrococcus furiosus} SCOP: h.4.12.1
Probab=32.25 E-value=55 Score=28.06 Aligned_cols=23 Identities=17% Similarity=0.355 Sum_probs=9.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhh
Q 005043 612 EMEKKLADSLKEMELLKEKLAGL 634 (717)
Q Consensus 612 ~~~~~~~~~~~~~~~l~~~~~~~ 634 (717)
++....+....+++.|+..+.-+
T Consensus 21 ~L~~~~~~l~~~i~~l~~~l~~l 43 (112)
T 1l8d_A 21 EITQRIGELKNKIGDLKTAIEEL 43 (112)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHh
Confidence 33334444444444444444433
No 469
>1f5n_A Interferon-induced guanylate-binding protein 1; GBP, GTP hydrolysis, GDP, GMP, dynamin related, large GTPase family. GMPPNP, GPPNHP.; HET: GNP; 1.70A {Homo sapiens} SCOP: a.114.1.1 c.37.1.8 PDB: 1dg3_A* 2b8w_A* 2b92_A* 2bc9_A* 2d4h_A*
Probab=31.88 E-value=2.5e+02 Score=31.63 Aligned_cols=19 Identities=16% Similarity=0.239 Sum_probs=10.3
Q ss_pred HHHHHHhhHHHHHhhhhhH
Q 005043 588 QLAAALVNREAAEKNFSSV 606 (717)
Q Consensus 588 ~~~~~~~~~~~~e~~~~~~ 606 (717)
++++..+-+|+||+.....
T Consensus 488 ~~~~~~~~~e~~~~~~~~l 506 (592)
T 1f5n_A 488 EIEVERVKAESAQASAKML 506 (592)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 4555556666666544333
No 470
>3c3g_A Alpha/beta peptide with the GCN4-PLI SIDE chain S AN (alpha-alpha-beta) backbone; helix bundle, foldamer, unknown function protein; HET: HMR B3Q B3D B3E B3L BIL B3K BAL GOL; 1.80A {Synthetic} PDB: 3heu_A* 3het_A* 3hev_A* 3hew_A* 3hey_A* 3hex_A* 3c3h_A*
Probab=31.82 E-value=58 Score=21.77 Aligned_cols=16 Identities=19% Similarity=0.148 Sum_probs=8.2
Q ss_pred HHHHHHHHHHHHHHHH
Q 005043 612 EMEKKLADSLKEMELL 627 (717)
Q Consensus 612 ~~~~~~~~~~~~~~~l 627 (717)
|+|.|+.+++.+...|
T Consensus 4 QLEdKvEeLl~~~~~L 19 (33)
T 3c3g_A 4 XIEXKLXEIXSKXYHX 19 (33)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhHH
Confidence 4555555555554443
No 471
>3tnu_B Keratin, type II cytoskeletal 5; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}
Probab=31.82 E-value=2.7e+02 Score=24.52 Aligned_cols=63 Identities=11% Similarity=0.141 Sum_probs=35.1
Q ss_pred HHHHHHHHHHHHhcchhHHHHHHHhhHHHHHhhhhhHHhh----HHHHHHHHHHHHHHHHHHHHHHh
Q 005043 570 FYESKMAALIRKNGILEGQLAAALVNREAAEKNFSSVLKS----RQEMEKKLADSLKEMELLKEKLA 632 (717)
Q Consensus 570 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~----~~~~~~~~~~~~~~~~~l~~~~~ 632 (717)
.-+.+|..+-+.-..|+.+|.....-+...|..|+.+=.. .+.+..+++....++..+|..++
T Consensus 33 ~~k~Ei~elrr~iq~L~~el~~l~~~~~~LE~~l~e~e~~~~~~l~~~q~~i~~lE~eL~~~r~e~~ 99 (129)
T 3tnu_B 33 NTKHEISEMNRMIQRLRAEIDNVKKQCANLQNAIADAEQRGELALKDARNKLAELEEALQKAKQDMA 99 (129)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Confidence 3456666666666777777777777777777766654211 12233444444444444444443
No 472
>2oto_A M protein; helical coiled coil, fibrinogen-binding, virulence factor, S active protein, toxin; 3.04A {Streptococcus pyogenes serotype M1} PDB: 2xny_M
Probab=31.70 E-value=2e+02 Score=26.13 Aligned_cols=8 Identities=50% Similarity=0.601 Sum_probs=3.2
Q ss_pred HHHHHhhh
Q 005043 627 LKEKLAGL 634 (717)
Q Consensus 627 l~~~~~~~ 634 (717)
|+++..++
T Consensus 98 L~e~~e~~ 105 (155)
T 2oto_A 98 LEEKKEAL 105 (155)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 44444433
No 473
>1fxk_C Protein (prefoldin); archaeal protein, chaperone; 2.30A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: a.2.5.1
Probab=31.69 E-value=1.9e+02 Score=25.46 Aligned_cols=86 Identities=13% Similarity=0.157 Sum_probs=0.0
Q ss_pred HHHHHHHHhcchhHHHHHHHhhHHHHHhhhhhHHhhHHHHHHHH------------------------------------
Q 005043 574 KMAALIRKNGILEGQLAAALVNREAAEKNFSSVLKSRQEMEKKL------------------------------------ 617 (717)
Q Consensus 574 ~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~------------------------------------ 617 (717)
++..+......++.++....+.+.+.+..++.+-++.+.++.=-
T Consensus 2 ~~~~l~~~~q~l~~~~~~l~~~~~~l~~~i~e~~~~~e~l~~l~~~~~~~~lvplg~~~yv~a~i~~~~~V~v~lG~g~~ 81 (133)
T 1fxk_C 2 ALAEIVAQLNIYQSQVELIQQQMEAVRATISELEILEKTLSDIQGKDGSETLVPVGAGSFIKAELKDTSEVIMSVGAGVA 81 (133)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCTTCEEEEEEETTEEEEEECCSTTEEEEEEETTEE
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCCeEEEEcCCCcEEEEEECCCCEEEEEcCCCEE
Q ss_pred --HHHHHHHHHHHHHHhhhhhhhhhhcccccccccCCccchhhHHHHHHHHHHHHHHh
Q 005043 618 --ADSLKEMELLKEKLAGLELAQEEANSLSNIVHSDNVRLEHDVAFLKAVLDDTQKEL 673 (717)
Q Consensus 618 --~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 673 (717)
-...+-.+.|++|+..++..-++... +++|+++-+..++.+|
T Consensus 82 vE~~~~eA~~~l~~r~~~l~~~~~~l~~--------------~l~~l~~~i~~~~~~l 125 (133)
T 1fxk_C 82 IKKNFEDAMESIKSQKNELESTLQKMGE--------------NLRAITDIMMKLSPQA 125 (133)
T ss_dssp EEEEHHHHHHHHHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHH
T ss_pred EEeeHHHHHHHHHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHH
No 474
>4dk0_A Putative MACA; alpha-hairpin, lipoyl, beta-barrel, periplasmic protein, MEM protein; 3.50A {Aggregatibacter actinomycetemcomitans} PDB: 4dk1_A
Probab=31.61 E-value=31 Score=36.11 Aligned_cols=14 Identities=21% Similarity=0.145 Sum_probs=5.4
Q ss_pred hhHHHHHHHhhHHH
Q 005043 585 LEGQLAAALVNREA 598 (717)
Q Consensus 585 ~~~~~~~~~~~~~~ 598 (717)
++.+|+.|....+.
T Consensus 89 a~~~~~~a~~~~~r 102 (369)
T 4dk0_A 89 RKTAYDVALSNYQR 102 (369)
T ss_dssp HHHHHHHTTTTHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 33344444333333
No 475
>4hw6_A Hypothetical protein, IPT/TIG domain protein; putative carbohydrate bindning two domains protein, IPT/TIG (PF01833), 6-beta-propeller; HET: MSE; 1.70A {Bacteroides ovatus}
Probab=31.50 E-value=4.2e+02 Score=28.06 Aligned_cols=148 Identities=10% Similarity=0.045 Sum_probs=0.0
Q ss_pred CCEEEEEeccCCCCCCceEEEEEECCCCcEEEeeecCCCCCCceeeEEEEECCEEEEEccccCCCCCcCcEEEEEcCCCc
Q 005043 156 GKKVLLVGGKTDSGSDRVSVWTFDTETECWSVVEAKGDIPVARSGHTVVRASSVLILFGGEDGKRRKLNDLHMFDLKSLT 235 (717)
Q Consensus 156 ~~~Iyv~GG~~~~~~~~~~v~~yD~~t~~W~~l~~~g~~P~~R~~hs~~~~~~~Lyv~GG~~~~~~~~~~v~~yD~~t~~ 235 (717)
++.||+.-.. ..++++|+.++..+.+. .+..+-..-++.-++.||+..-.... ....++.++.. ..
T Consensus 152 ~g~Lyv~D~~-------~~I~~id~~~g~v~~~~----~~~~~P~giavd~dG~lyVad~~~~~--~~~gv~~~~~~-~~ 217 (433)
T 4hw6_A 152 YDDLYWVGQR-------DAFRHVDFVNQYVDIKT----TNIGQCADVNFTLNGDMVVVDDQSSD--TNTGIYLFTRA-SG 217 (433)
T ss_dssp TCEEEEECBT-------SCEEEEETTTTEEEEEC----CCCSCEEEEEECTTCCEEEEECCSCT--TSEEEEEECGG-GT
T ss_pred CCEEEEEeCC-------CCEEEEECCCCEEEEee----cCCCCccEEEECCCCCEEEEcCCCCc--ccceEEEEECC-CC
Q ss_pred eEeccCCCCCCCCCcccEEEEEC-CcEEEEEcCCCCCCCCCeEEEEECCCCcE-EEeecCCCCCCCCcceEEEEE--CCE
Q 005043 236 WLPLHCTGTGPSPRSNHVAALYD-DKNLLIFGGSSKSKTLNDLYSLDFETMIW-TRIKIRGFHPSPRAGCCGVLC--GTK 311 (717)
Q Consensus 236 W~~l~~~g~~P~~R~~~aa~~~~-~~~lyV~GG~~~~~~~ndv~~yd~~t~~W-~~v~~~g~~P~~R~~~sav~~--~~~ 311 (717)
|.... .++....-..+++.. ++.||+.-..++. |++||+.+... +.+... ........++.. ++.
T Consensus 218 ~~~~~---~~~~~~~P~giavd~~~G~lyv~d~~~~~-----V~~~d~~~g~~~~~~~~~---~~~~~~~~ia~dpdG~~ 286 (433)
T 4hw6_A 218 FTERL---SLCNARGAKTCAVHPQNGKIYYTRYHHAM-----ISSYDPATGTLTEEEVMM---DTKGSNFHIVWHPTGDW 286 (433)
T ss_dssp TCCEE---EEEECSSBCCCEECTTTCCEEECBTTCSE-----EEEECTTTCCEEEEEEEC---SCCSSCEEEEECTTSSE
T ss_pred eeccc---cccccCCCCEEEEeCCCCeEEEEECCCCE-----EEEEECCCCeEEEEEecc---CCCCCcccEEEeCCCCE
Q ss_pred EEEEecCCCCCccCeEEEEECC
Q 005043 312 WYIAGGGSRKKRHAETLIFDIL 333 (717)
Q Consensus 312 IyV~GG~~~~~~~~dv~~yD~~ 333 (717)
|||.--.... |+++++.
T Consensus 287 LYvad~~~~~-----I~~~~~d 303 (433)
T 4hw6_A 287 AYIIYNGKHC-----IYRVDYN 303 (433)
T ss_dssp EEEEETTTTE-----EEEEEBC
T ss_pred EEEEeCCCCE-----EEEEeCC
No 476
>1ci6_A Transcription factor ATF-4; BZIP; 2.60A {Homo sapiens} SCOP: h.1.3.1
Probab=30.60 E-value=1.3e+02 Score=23.26 Aligned_cols=35 Identities=20% Similarity=0.321 Sum_probs=21.8
Q ss_pred HHHHhhhhhHHhhHHHHHHHHHHHHHHHHHHHHHH
Q 005043 597 EAAEKNFSSVLKSRQEMEKKLADSLKEMELLKEKL 631 (717)
Q Consensus 597 ~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 631 (717)
++.|..+..+-+...+|+.+++...+|+..||+=|
T Consensus 26 ~~le~~~~~L~~~N~~L~~~i~~L~~E~~~Lk~ll 60 (63)
T 1ci6_A 26 EALTGECKELEKKNEALKERADSLAKEIQYLKDLI 60 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555555566666666666666666666666544
No 477
>3c3f_A Alpha/beta peptide with the GCN4-PLI SIDE chain S AN (alpha-alpha-alpha-beta) backbone...; helix bundle, foldamer, unknown function, de novo protein; HET: B3K B3D B3E BIL B3L BAL; 2.00A {Synthetic} SCOP: h.1.3.1
Probab=30.24 E-value=64 Score=21.69 Aligned_cols=17 Identities=24% Similarity=0.327 Sum_probs=8.9
Q ss_pred HHHHHHHHHHHHHHHHH
Q 005043 612 EMEKKLADSLKEMELLK 628 (717)
Q Consensus 612 ~~~~~~~~~~~~~~~l~ 628 (717)
|+|.|+.+++.+...|.
T Consensus 5 QLEdKVEeLl~~~~~Le 21 (34)
T 3c3f_A 5 QIEXKLEXILSXLYHXE 21 (34)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhhHHH
Confidence 45556555555544443
No 478
>3u0c_A Invasin IPAB, 62 kDa antigen; translocator, type three secretion system, coiled-coil, VIRU cell invasion; 2.05A {Shigella flexneri} PDB: 3gz1_P
Probab=30.23 E-value=1.5e+02 Score=27.37 Aligned_cols=75 Identities=17% Similarity=0.310 Sum_probs=58.8
Q ss_pred HHHHHHHHHHHhcchhHHHHHHHhhHHHHHhhhhhHHhhHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhcccc
Q 005043 571 YESKMAALIRKNGILEGQLAAALVNREAAEKNFSSVLKSRQEMEKKLADSLKEMELLKEKLAGLELAQEEANSLS 645 (717)
Q Consensus 571 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 645 (717)
.....+.-.+++..+.+...+||.+-+.|-..+.-++.+..-++++..+..+.++.+..||.++.=.-=++|.+|
T Consensus 80 wlsQ~em~~qks~EFSD~~qTaL~eAQ~AtD~y~~Ainny~~Ads~~~~lekKvn~aq~kLs~L~P~dP~Y~K~~ 154 (201)
T 3u0c_A 80 WKSQQQARQQKNLEFSDKINTLLSETEGLTRDYEKQINKLKNADSKIKDLENKINQIQTRLSELDPESPEKKKLS 154 (201)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCSSCTTHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHhcCCCCCCcccccc
Confidence 334455566667777777788888877777788888888888888888888888889999998887777788765
No 479
>1t2k_D Cyclic-AMP-dependent transcription factor ATF-2; protein DNA complex, transcription/DNA complex; 3.00A {Homo sapiens} SCOP: h.1.3.1
Probab=30.06 E-value=84 Score=23.98 Aligned_cols=33 Identities=18% Similarity=0.190 Sum_probs=15.9
Q ss_pred HHhhhhhHHhhHHHHHHHHHHHHHHHHHHHHHH
Q 005043 599 AEKNFSSVLKSRQEMEKKLADSLKEMELLKEKL 631 (717)
Q Consensus 599 ~e~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 631 (717)
+|..+........+|..+++....|+..||..|
T Consensus 27 Le~~~~~L~~~n~~L~~~i~~L~~e~~~Lk~~l 59 (61)
T 1t2k_D 27 LEKKAEDLSSLNGQLQSEVTLLRNEVAQLKQLL 59 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 344444444444555555555555555555443
No 480
>2ve7_A Kinetochore protein HEC1, kinetochore protein SPC; mitosis, centromere, cell cycle, microtubule, C division, calponin homology; 2.88A {Homo sapiens} PDB: 3iz0_C*
Probab=29.82 E-value=1.8e+02 Score=29.99 Aligned_cols=87 Identities=14% Similarity=0.126 Sum_probs=46.6
Q ss_pred HHHHHHHHHHHHHHHhcchhHHHHHHHhhHHHHHhhhhhHHhhHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhccccc
Q 005043 567 IYQFYESKMAALIRKNGILEGQLAAALVNREAAEKNFSSVLKSRQEMEKKLADSLKEMELLKEKLAGLELAQEEANSLSN 646 (717)
Q Consensus 567 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 646 (717)
+.++...--...++.....+.. .+-+. +..++....+....+.++++.+.+.+|++.|+.++...+.++.+.
T Consensus 147 ~~~y~~~~Y~~fl~~~d~~~~~-~~e~~--~~~~~~~n~~~~eie~L~~~~~~L~eEi~~Le~~~e~~~k~n~~r----- 218 (315)
T 2ve7_A 147 FLDYTIKCYESFMSGADSFDEM-NAELQ--SKLKDLFNVDAFKLESLEAKNRALNEQIARLEQERSTANKANAER----- 218 (315)
T ss_dssp HHHHHHHHHHHHHHTCSCCHHH-HHHHH--HHHHHHHTCCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT-----
T ss_pred HHHHHHHHHHHHHhCCcchhHH-HHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHH-----
Confidence 4455555556666654332222 22222 333444455566677777777777777777766665555543222
Q ss_pred ccccCCccchhhHHHHHHHH
Q 005043 647 IVHSDNVRLEHDVAFLKAVL 666 (717)
Q Consensus 647 ~~~~~~~~~~~~~~~~~~~~ 666 (717)
.-.|+..++|.+-.|
T Consensus 219 -----l~~Lqk~~~~~~~~L 233 (315)
T 2ve7_A 219 -----LKRLQKSADLYKDRL 233 (315)
T ss_dssp -----TTTHHHHHHHHHHHS
T ss_pred -----HHHHHHHHHHHHHHc
Confidence 224455566665443
No 481
>2oxj_A Hybrid alpha/beta peptide based on the GCN4-P1 Se heptad positions B and F substituted...; helix bundle, foldamer, unknown function; HET: B3K B3D B3E B3S B3Y B3X B3A BAL; 2.00A {Synthetic} PDB: 2oxk_A*
Probab=29.46 E-value=67 Score=21.63 Aligned_cols=20 Identities=20% Similarity=0.368 Sum_probs=10.5
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 005043 612 EMEKKLADSLKEMELLKEKL 631 (717)
Q Consensus 612 ~~~~~~~~~~~~~~~l~~~~ 631 (717)
|+|.|+.+.+.+.+.|+-.+
T Consensus 5 QLE~kVEeLl~~n~~Le~eV 24 (34)
T 2oxj_A 5 QLEXKVXELLXKNXHLEXEV 24 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhhHHHHH
Confidence 45566655555555444333
No 482
>3lp9_A LS-24; SEED albumin, plant protein; HET: SPM; 2.20A {Lathyrus sativus} PDB: 3s0l_A 3v6n_A 4hsd_A 3s18_A
Probab=29.43 E-value=69 Score=31.39 Aligned_cols=63 Identities=14% Similarity=0.228 Sum_probs=37.4
Q ss_pred CCEEEEEeccCCCCCCceEEEEEECCCCcEEEeee---cCCCCC------CceeeEEEE--ECCEEEEEccccCCCCCcC
Q 005043 156 GKKVLLVGGKTDSGSDRVSVWTFDTETECWSVVEA---KGDIPV------ARSGHTVVR--ASSVLILFGGEDGKRRKLN 224 (717)
Q Consensus 156 ~~~Iyv~GG~~~~~~~~~~v~~yD~~t~~W~~l~~---~g~~P~------~R~~hs~~~--~~~~Lyv~GG~~~~~~~~~ 224 (717)
++++|+|-|. .+|+||..+++-..--+ ....|. +..-.++.. .++++|+|-| +
T Consensus 129 ~~k~yfFkG~--------~yw~~d~~~~~~~~gyPk~i~~g~p~~~~~g~p~~iDAA~~~~~~g~~YfFkg--------~ 192 (227)
T 3lp9_A 129 GKEVYLFKGD--------QYARIDYGSNSMVNKEIKSISSGYPCFRNTIFESGADAAFASHKTNEVYFFKD--------D 192 (227)
T ss_dssp TTEEEEEETT--------EEEEEETTTTEESSSSCEEHHHHCGGGTTSGGGGCCSEEEECSSTTEEEEEET--------T
T ss_pred CCEEEEEECC--------EEEEEeCCCccccCCCCeEHHHCCCCccccccCCCccEEEEcCCCceEEEEEC--------C
Confidence 6899999774 59999987654211000 001231 122223433 3589999965 4
Q ss_pred cEEEEEcCCC
Q 005043 225 DLHMFDLKSL 234 (717)
Q Consensus 225 ~v~~yD~~t~ 234 (717)
..|+||..+.
T Consensus 193 ~Ywr~d~~~~ 202 (227)
T 3lp9_A 193 HYARVKVTPX 202 (227)
T ss_dssp EEEEEECCSS
T ss_pred EEEEEECCcc
Confidence 5789998765
No 483
>1fwx_A Nitrous oxide reductase; beta-propeller domain, cupredoxin domain, CUZ site, CUA site oxidoreductase; 1.60A {Paracoccus denitrificans} SCOP: b.6.1.4 b.69.3.1 PDB: 2iwk_A 2iwf_A
Probab=29.25 E-value=6.5e+02 Score=28.24 Aligned_cols=271 Identities=13% Similarity=0.096 Sum_probs=0.0
Q ss_pred CCCCCCcceeEEEEE------CCEEEEEcccCCCCCcccEEEEEcCCCceEEccccccCCCCCCCCCCCcccceEEEE--
Q 005043 83 GDKPIPRFNHAAAVI------GNKMIVVGGESGNGLLDDVQVLNFDRFSWTAASSKLYLSPSSLPLKIPACRGHSLIS-- 154 (717)
Q Consensus 83 g~~P~~R~~haav~~------~~~lyV~GG~~~~~~~~~v~~yd~~t~~W~~l~~~~~~~~~~~~~~~p~r~~hs~v~-- 154 (717)
...+..-..|-.... +.++||--..+.. +.+.|+.+.+=..+-.. +-...-|+++.
T Consensus 80 ~~~~~gd~hh~~~s~t~g~~DG~~lfVnd~~~~r-----VavIdl~t~~~~~ii~i-----------p~g~~phg~~~~~ 143 (595)
T 1fwx_A 80 RIHDNGDLHHVHMSFTEGKYDGRFLFMNDKANTR-----VARVRCDVMKCDAILEI-----------PNAKGIHGLRPQK 143 (595)
T ss_dssp SSCCCCCBCCEEEEEETTEEEEEEEEEEETTTTE-----EEEEETTTTEEEEEEEC-----------SSCCSEEEEEECC
T ss_pred eecccCCCCccccCCCCCCcCCCEEEEEcCCCCE-----EEEEECCCceEeeEEeC-----------CCCCCCcceeeee
Q ss_pred -ECCEEEEEeccCCC------------CCCceEEEEEECCCCc--EEEeeecCC-----CCCCceeeEEEEEC-------
Q 005043 155 -WGKKVLLVGGKTDS------------GSDRVSVWTFDTETEC--WSVVEAKGD-----IPVARSGHTVVRAS------- 207 (717)
Q Consensus 155 -~~~~Iyv~GG~~~~------------~~~~~~v~~yD~~t~~--W~~l~~~g~-----~P~~R~~hs~~~~~------- 207 (717)
-++...+.++.... ....+.+-+.|.++.+ |+..-.... -|..+..+..+.-.
T Consensus 144 ~p~~~~v~~~~~~~~p~~~dg~~l~~~~~~~~~vtvID~~t~~v~~qI~Vgg~pd~~~~spdGk~~~vt~~~se~~~~i~ 223 (595)
T 1fwx_A 144 WPRSNYVFCNGEDETPLVNDGTNMEDVANYVNVFTAVDADKWEVAWQVLVSGNLDNCDADYEGKWAFSTSYNSEKGMTLP 223 (595)
T ss_dssp SSBCSEEEEEECSCEESSCSSSSTTCGGGEEEEEEEEETTTTEEEEEEEESSCCCCEEECSSSSEEEEEESCTTCCSSHH
T ss_pred cCCCcEEEEecccccccCCCCcccccccccCceEEEEECCCCeEEEEEEeCCCccceEECCCCCEEEEEecCcccCcchh
Q ss_pred -------CEEEEEccc-------cCCCCCcCcEEEEEcCCCceEe-ccCCCCCCCCCcccEEEEECCc-EEEEEcCCCCC
Q 005043 208 -------SVLILFGGE-------DGKRRKLNDLHMFDLKSLTWLP-LHCTGTGPSPRSNHVAALYDDK-NLLIFGGSSKS 271 (717)
Q Consensus 208 -------~~Lyv~GG~-------~~~~~~~~~v~~yD~~t~~W~~-l~~~g~~P~~R~~~aa~~~~~~-~lyV~GG~~~~ 271 (717)
+.+.|+--. ++...+.+.+-+.|..+.+... +. .+|.+..-|++.+-.++ ++|+.+..+..
T Consensus 224 ~~~~~~~d~v~V~~~~~~~~~v~~Gk~~~i~~V~VID~~~~~~~~~~~---~Ipvg~~PhGv~~sPDGk~v~V~~~~s~~ 300 (595)
T 1fwx_A 224 EMTAAEMDHIVVFNIAEIEKAIAAGDYQELNGVKVVDGRKEASSLFTR---YIPIANNPHGCNMAPDKKHLCVAGKLSPT 300 (595)
T ss_dssp HHTCCSEEEEEEEEHHHHHHHHHHTCSEEETTEEEEECSGGGCCSSEE---EEEEESSCCCEEECTTSSEEEEECTTSSB
T ss_pred hccccccceEEEeeccceeEeccCCCeeEECcEEEEeCcccCCceeEE---EEecCCCceEEEEcCCCCEEEEeCCCCCe
Q ss_pred CCCCeEEEEECCCC-------------cEEEeecCCCCCCCCcceEEEEECCEEEEEecCCCCCccCeEEEEECCC----
Q 005043 272 KTLNDLYSLDFETM-------------IWTRIKIRGFHPSPRAGCCGVLCGTKWYIAGGGSRKKRHAETLIFDILK---- 334 (717)
Q Consensus 272 ~~~ndv~~yd~~t~-------------~W~~v~~~g~~P~~R~~~sav~~~~~IyV~GG~~~~~~~~dv~~yD~~t---- 334 (717)
+.+||..+. .-..+..- .+-.|.+..-++.+|+.-..++. +-.||+++
T Consensus 301 -----VsVid~~~~~~~~~~~l~~~~~v~~~v~vG-----~gP~h~aF~~dG~aY~t~~ldsq-----V~kwdi~~a~~~ 365 (595)
T 1fwx_A 301 -----VTVLDVTRFDAVFYENADPRSAVVAEPELG-----LGPLHTAFDGRGNAYTSLFLDSQ-----VVKWNIEDAIRA 365 (595)
T ss_dssp -----EEEEEGGGHHHHHHSCCCGGGGEEECCBCC-----SCEEEEEECTTSEEEEEETTTTE-----EEEEEHHHHHHH
T ss_pred -----EEEEECcccccccccccCcccceEEEcCCC-----CCcceEEECCCCeEEEEEecCCc-----EEEEEhhHhhhh
Q ss_pred ----CcEEEeecCCCCCCCCCcceEEEEEEe---CCCcEEEEEcCCCCCCC--------CeEEEEEccCCc
Q 005043 335 ----GEWSVAITSPSSSVTSNKGFTLVLVQH---KEKDFLVAFGGIKKEPS--------NQVEVLSIEKNE 390 (717)
Q Consensus 335 ----~~W~~l~~~p~~~~~~r~g~s~v~v~~---~~~~~I~v~GG~~~~~~--------n~v~vyd~~~~e 390 (717)
..+..+...+.. ...||....... .++.++|+.-+...+.. ..-.+||+..++
T Consensus 366 ~~g~~~~~vi~kidV~---yqpGh~~~~~g~t~~~DGk~l~~~Nk~skdr~~~~gp~~~~~~ql~dis~~~ 433 (595)
T 1fwx_A 366 YAGEKVDPIKDKLDVH---YQPGHLKTVMGETLDATNDWLVCLSKFSKDRFLNVGPLKPENDQLIDISGDK 433 (595)
T ss_dssp HHTCSCCCEEEEEECS---SCEEEEEETTTTSTTCCSSEEEEEESCCTTSSCCCCSSCCEEEEEEECSSSS
T ss_pred hcccccceeEEEeecc---cccccceeccceEeCCCCCEEEEcCCCCccccccCCCCCCCcceEEEcCCCc
No 484
>1t3u_A Conserved hypothetical protein; NYSGXRC, unknown ORF, COG3027, PSI, protein structure initiative; 2.50A {Pseudomonas aeruginosa PAO1} SCOP: d.244.1.1 PDB: 1w2e_A
Probab=29.18 E-value=2.2e+02 Score=23.97 Aligned_cols=63 Identities=6% Similarity=0.221 Sum_probs=42.6
Q ss_pred HHHHHHHHHHHHHHhcchhHHHHHHHhhHHHHHhhhhhHHhhHHHHHHHHHHHHHHHHHHHHHHhhh
Q 005043 568 YQFYESKMAALIRKNGILEGQLAAALVNREAAEKNFSSVLKSRQEMEKKLADSLKEMELLKEKLAGL 634 (717)
Q Consensus 568 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 634 (717)
-++.+.|+..+-.++..+..+-.++++...-|.+-+ +.+++.+..+....+.++.|.++|..+
T Consensus 32 A~~vd~~~~~i~~~~~~~~~~r~~vmaALnladel~----~~~~~~~~~~~~~~~~i~~L~~~le~a 94 (104)
T 1t3u_A 32 ARYLDGKMREIRSSGKVIGADRVAVMAALNITHDLL----HRKERLDQESSSTRERVRELLDRVDRA 94 (104)
T ss_dssp HHHHHHHHHHHHTTTCSCSHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 368999999999999999888888888887775543 334444444455555555555555443
No 485
>1jnm_A Proto-oncogene C-JUN; BZIP, protein-DNA complex, transcription/DNA complex; 2.20A {Homo sapiens} SCOP: h.1.3.1 PDB: 1fos_F 2h7h_A 1t2k_C 1a02_J* 1s9k_E 1jun_A
Probab=28.93 E-value=1.3e+02 Score=23.00 Aligned_cols=25 Identities=20% Similarity=0.235 Sum_probs=11.0
Q ss_pred hhhhhHHhhHHHHHHHHHHHHHHHH
Q 005043 601 KNFSSVLKSRQEMEKKLADSLKEME 625 (717)
Q Consensus 601 ~~~~~~~~~~~~~~~~~~~~~~~~~ 625 (717)
+|--.+-++|+.=...+.++..+++
T Consensus 8 rNr~AA~k~R~rKk~~~~~Le~~v~ 32 (62)
T 1jnm_A 8 RNRIAASKSRKRKLERIARLEEKVK 32 (62)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444455666543333333333333
No 486
>1d7m_A Cortexillin I; coiled-coil, coiled-coil trigger site, alpha helix, dimeriza contractIle protein; 2.70A {Dictyostelium discoideum} SCOP: h.1.10.1
Probab=28.58 E-value=2.5e+02 Score=23.20 Aligned_cols=44 Identities=36% Similarity=0.382 Sum_probs=24.7
Q ss_pred hhHHHHHHHhhHHHHHhhhhhHHhhHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 005043 585 LEGQLAAALVNREAAEKNFSSVLKSRQEMEKKLADSLKEMELLKEKLAGLE 635 (717)
Q Consensus 585 ~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 635 (717)
|+..++.+|...| .--=-|=++|.+|+-+.|+...|.-|||.+-
T Consensus 51 l~akidd~Lk~l~-------~EklAkldLE~RLsKtEKDkAiLELkLaE~~ 94 (101)
T 1d7m_A 51 LEAKLDETLKNLE-------LEKLARMELEARLAKTEKDRAILELKLAEAI 94 (101)
T ss_dssp HHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHccc-------HHHHHHHHHHHHHhhhhhHHHHHHHHHHHhh
Confidence 4444555554433 2223355666667777777777766666543
No 487
>4fla_A Regulation of nuclear PRE-mRNA domain-containing 1B; structural genomics consortium, SGC, transcription; 2.20A {Homo sapiens}
Probab=28.46 E-value=2.4e+02 Score=25.82 Aligned_cols=68 Identities=22% Similarity=0.226 Sum_probs=56.7
Q ss_pred HhhHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhcccccccccCCccchhhHHHHHHHHHHHHHHhhhhccchh
Q 005043 607 LKSRQEMEKKLADSLKEMELLKEKLAGLELAQEEANSLSNIVHSDNVRLEHDVAFLKAVLDDTQKELHSTRGVLA 681 (717)
Q Consensus 607 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 681 (717)
+++|++.++=...+.+-.++|.|-...++...++.+.|..+ ||.=.+|.++++.+..+.|...|+-++
T Consensus 64 lkDk~~~e~l~~~veeA~~~L~eYn~rL~~E~~dR~~L~~~-------L~~~~~~~~~~l~e~e~~leeyK~Kl~ 131 (152)
T 4fla_A 64 ITDKEAAERLSKTVDEACLLLAEYNGRLAAELEDRRQLARM-------LVEYTQNQKDVLSEKEKKLEEYKQKLA 131 (152)
T ss_dssp CCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 68899998888888888899999999999888888887554 566678899999999988888877654
No 488
>2xnx_M M protein, M1-BC1; cell adhesion, virulence factor, streptococcal toxic shock S; 3.30A {Streptococcus pyogenes}
Probab=28.31 E-value=2.3e+02 Score=25.72 Aligned_cols=11 Identities=18% Similarity=0.238 Sum_probs=0.0
Q ss_pred ccchhhHHHHH
Q 005043 653 VRLEHDVAFLK 663 (717)
Q Consensus 653 ~~~~~~~~~~~ 663 (717)
-.|-+|+.-..
T Consensus 118 qgLrRDLeASR 128 (146)
T 2xnx_M 118 QSLRRDLDASR 128 (146)
T ss_dssp -----------
T ss_pred HHHHHHHHHHH
Confidence 34445544333
No 489
>2o6n_A RH4B designed peptide; right-handed, tetramer, de novo protein; HET: CGU; 1.10A {Synthetic} SCOP: k.17.1.1 PDB: 1tgg_A*
Probab=28.19 E-value=1.1e+02 Score=20.01 Aligned_cols=32 Identities=25% Similarity=0.391 Sum_probs=16.9
Q ss_pred hhHHHHHhhhhhHHhhHHHHHHHHHHHHHHHHHHHHHH
Q 005043 594 VNREAAEKNFSSVLKSRQEMEKKLADSLKEMELLKEKL 631 (717)
Q Consensus 594 ~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 631 (717)
++.|||.|.++-.++ +-..++++|+..-|..+
T Consensus 2 aeieqakkeiaylik------kakeeileeikkakqei 33 (35)
T 2o6n_A 2 AEIEQAKKEIAYLIK------KAKEEILEEIKKAKQEI 33 (35)
T ss_dssp CHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHh
Confidence 456677776665543 22344555555444444
No 490
>2cn3_A Xyloglucanase, beta-1,4-xyloglucan hydrolase; glycosylhydrolase, family GH74; HET: GLC BGC GAL; 1.95A {Clostridium thermocellum} PDB: 2cn2_A*
Probab=28.15 E-value=7.1e+02 Score=28.32 Aligned_cols=111 Identities=13% Similarity=0.106 Sum_probs=62.0
Q ss_pred EEEEEcCCCceEeccCCCCCCCCCcccEEEEECCcEEEEEcCCCCC----CCCCeEEEEECCCCcEEEeecCCCC-CCCC
Q 005043 226 LHMFDLKSLTWLPLHCTGTGPSPRSNHVAALYDDKNLLIFGGSSKS----KTLNDLYSLDFETMIWTRIKIRGFH-PSPR 300 (717)
Q Consensus 226 v~~yD~~t~~W~~l~~~g~~P~~R~~~aa~~~~~~~lyV~GG~~~~----~~~ndv~~yd~~t~~W~~v~~~g~~-P~~R 300 (717)
+++=.-.-.+|+.+. .+|.....|.++...+..+|+..+.... .....+++++....+|+.+...+.. +..+
T Consensus 224 v~~S~DgG~tW~~~~---~~p~~~~~~~~~~~~~~~l~~~~~d~~g~y~~~~~g~v~~s~d~G~tW~~i~~~~~~~~~~~ 300 (737)
T 2cn3_A 224 IYRSTDGGVTWKAVP---GQPKGLLPHHGVLASNGMLYITYGDTCGPYDGNGKGQVWKFNTRTGEWIDITPIPYSSSDNR 300 (737)
T ss_dssp EEEESSTTSCCEECT---TCCCSSEEEEEEECTTSEEEEEEESSCCSSCCSCCEEEEEEETTTCCEEECCSSCTTSTTCC
T ss_pred EEEEcCCCCceEECC---CCCCcccceEEEECCCCeEEEEecCCCCccccccCceEEEEeCCCCCEEEccCCCCCCcccc
Confidence 444333356799986 5555444454544434457776543211 1334699999999999999764211 0234
Q ss_pred cceEEEEE----CCEEEEEecCCCCCccCeEEEEECCCCcEEEe
Q 005043 301 AGCCGVLC----GTKWYIAGGGSRKKRHAETLIFDILKGEWSVA 340 (717)
Q Consensus 301 ~~~sav~~----~~~IyV~GG~~~~~~~~dv~~yD~~t~~W~~l 340 (717)
++++.+.+ .+.||+.+.... .....+++-.-...+|+.+
T Consensus 301 ~~~~~i~v~p~~~~~ly~~~~~~~-~~~~~l~~S~DgG~tW~~~ 343 (737)
T 2cn3_A 301 FCFAGLAVDRQNPDIIMVTSMNAW-WPDEYIFRSTDGGATWKNI 343 (737)
T ss_dssp SEEEEEEECTTCTTCEEEEEECCC-SSCCCEEEESSTTSSCEES
T ss_pred cccccEEEcCCCCCEEEEEecccC-CCCccEEEeCCCCccccch
Confidence 55554444 267888775411 0112344444455788887
No 491
>3m48_A General control protein GCN4; leucine zipper, synthetic peptide, alpha helix, activa amino-acid biosynthesis, DNA-binding, nucleus; 1.45A {Synthetic} PDB: 3i1g_A 2ahp_A* 2o7h_A
Probab=27.74 E-value=75 Score=21.31 Aligned_cols=18 Identities=22% Similarity=0.283 Sum_probs=8.8
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 005043 612 EMEKKLADSLKEMELLKE 629 (717)
Q Consensus 612 ~~~~~~~~~~~~~~~l~~ 629 (717)
|+|.|+.+.+.|...|+.
T Consensus 4 QLE~kVEeLl~~n~~Le~ 21 (33)
T 3m48_A 4 QLEAKVEELLSKNWNLEN 21 (33)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhHHHHH
Confidence 455555555554444433
No 492
>2wt7_A Proto-oncogene protein C-FOS; transcription, transcription regulation, nucleus, activator, repressor, DNA-binding, phosphoprotein, differentiation; 2.30A {Mus musculus} PDB: 1fos_E* 1a02_F* 1s9k_D
Probab=27.59 E-value=86 Score=24.17 Aligned_cols=38 Identities=16% Similarity=0.121 Sum_probs=20.4
Q ss_pred HHHHHhhhhhHHhhHHHHHHHHHHHHHHHHHHHHHHhh
Q 005043 596 REAAEKNFSSVLKSRQEMEKKLADSLKEMELLKEKLAG 633 (717)
Q Consensus 596 ~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 633 (717)
+++|-|.=.--..--++|+.++.....+-+.|++.|+.
T Consensus 11 R~AA~rcR~rKk~~~~~Le~~v~~L~~~n~~L~~ei~~ 48 (63)
T 2wt7_A 11 KMAAAKCRNRRRELTDTLQAETDQLEDEKSALQTEIAN 48 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444333333344456666666666666666666643
No 493
>2j04_A TAU60, YPL007P, hypothetical protein YPL007C; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}
Probab=27.59 E-value=6.9e+02 Score=27.99 Aligned_cols=148 Identities=11% Similarity=0.093 Sum_probs=77.6
Q ss_pred CCEEEEEccccCCCCCcCcEEEEEcCCCceEeccCCCCCC-CCCcccEEEEECCcEEEEEcCCCCCCCCCeEEEEECCCC
Q 005043 207 SSVLILFGGEDGKRRKLNDLHMFDLKSLTWLPLHCTGTGP-SPRSNHVAALYDDKNLLIFGGSSKSKTLNDLYSLDFETM 285 (717)
Q Consensus 207 ~~~Lyv~GG~~~~~~~~~~v~~yD~~t~~W~~l~~~g~~P-~~R~~~aa~~~~~~~lyV~GG~~~~~~~ndv~~yd~~t~ 285 (717)
+|+.++.++.++. +.+||..+ .+..+. ..++ ..+..++++...++.+++.||.++ .|..||+.++
T Consensus 96 dG~~LAs~s~dg~------V~iwd~~~-~l~~l~--~~~~~~~~sv~svafSPDG~~LAsgs~DG-----tVkIWd~~~~ 161 (588)
T 2j04_A 96 IDDWMAVLSNNGN------VSVFKDNK-MLTNLD--SKGNLSSRTYHCFEWNPIESSIVVGNEDG-----ELQFFSIRKN 161 (588)
T ss_dssp SSSCEEEEETTSC------EEEEETTE-EEEECC--CSSCSTTTCEEEEEECSSSSCEEEEETTS-----EEEEEECCCC
T ss_pred CCCEEEEEeCCCc------EEEEeCCc-eeeecc--CCCccccccEEEEEEcCCCCEEEEEcCCC-----EEEEEECCCC
Confidence 5677777665443 67777543 444443 2332 234455666555554777787754 5899999876
Q ss_pred c--------EEEeecCCCCCCCCcceEEEEECCEEEEEecCCCCCccCeEEEEECCCCc----EEEeecCCCCCCCCCcc
Q 005043 286 I--------WTRIKIRGFHPSPRAGCCGVLCGTKWYIAGGGSRKKRHAETLIFDILKGE----WSVAITSPSSSVTSNKG 353 (717)
Q Consensus 286 ~--------W~~v~~~g~~P~~R~~~sav~~~~~IyV~GG~~~~~~~~dv~~yD~~t~~----W~~l~~~p~~~~~~r~g 353 (717)
. ...+.... ......-.+.+...+. ++.+|.+. .+..+|+.++. |..+.. . .+..
T Consensus 162 ~l~~~~~i~l~ti~~~~-~gh~~~V~sVawSPdg-Laass~D~-----tVrlWd~~~~~~~~~~~tL~~--~----h~~~ 228 (588)
T 2j04_A 162 SENTPEFYFESSIRLSD-AGSKDWVTHIVWYEDV-LVAALSNN-----SVFSMTVSASSHQPVSRMIQN--A----SRRK 228 (588)
T ss_dssp TTTCCCCEEEEEEECSC-TTCCCCEEEEEEETTE-EEEEETTC-----CEEEECCCSSSSCCCEEEEEC--C----CSSC
T ss_pred ccccccceeeeeeeccc-ccccccEEEEEEcCCc-EEEEeCCC-----eEEEEECCCCccccceeeecc--c----ccCc
Confidence 3 23332110 0011122333444555 77777653 48888887755 344421 1 1222
Q ss_pred eEEEEEEeCCCcEEEEEcCCCCCCCCeEEEEEccCCc
Q 005043 354 FTLVLVQHKEKDFLVAFGGIKKEPSNQVEVLSIEKNE 390 (717)
Q Consensus 354 ~s~v~v~~~~~~~I~v~GG~~~~~~n~v~vyd~~~~e 390 (717)
...+.+. +. +++.++. ..|.+||+...+
T Consensus 229 V~svaFs---g~-~LASa~~-----~tIkLWd~~~~~ 256 (588)
T 2j04_A 229 ITDLKIV---DY-KVVLTCP-----GYVHKIDLKNYS 256 (588)
T ss_dssp CCCEEEE---TT-EEEEECS-----SEEEEEETTTTE
T ss_pred EEEEEEE---CC-EEEEEeC-----CeEEEEECCCCe
Confidence 2233333 23 4444442 378999987665
No 494
>3cl3_D NF-kappa-B essential modulator; death effector domain, coiled-coil, coiled coil, cytoplasm, disease mutation, ectodermal dysplasia; 3.20A {Homo sapiens}
Probab=27.53 E-value=20 Score=31.76 Aligned_cols=22 Identities=50% Similarity=0.626 Sum_probs=0.8
Q ss_pred hhhccccceeeEEEeehhhhhhhhhc
Q 005043 680 LAGERARAFQLQVEVFHLKQRLQSLE 705 (717)
Q Consensus 680 ~~~~~~~~~~~~~~~~~~~~~~~~~~ 705 (717)
--+||.|--|| -+|+|+||..|
T Consensus 108 ~~~e~~~~~ql----~dL~qqLq~ae 129 (130)
T 3cl3_D 108 VGSERKRGMQL----EDLKQQLQQAE 129 (130)
T ss_dssp CC------------------------
T ss_pred HhhhhhccchH----HHHHHHHHHhc
Confidence 34677777444 48999998765
No 495
>3sre_A PON1, serum paraoxonase; directed evolution, 6-blades-propeller fold, hydrolase; HET: LMT; 1.99A {Artificial gene} PDB: 1v04_A* 3srg_A*
Probab=27.26 E-value=5.4e+02 Score=26.66 Aligned_cols=151 Identities=10% Similarity=0.087 Sum_probs=79.4
Q ss_pred cCcEEEEEcC--CCceEeccCCCC-CC-CCCcccEEEEEC---Cc-EEEEEcCCCCCCCCCeEEEEECCCCcEEEeecCC
Q 005043 223 LNDLHMFDLK--SLTWLPLHCTGT-GP-SPRSNHVAALYD---DK-NLLIFGGSSKSKTLNDLYSLDFETMIWTRIKIRG 294 (717)
Q Consensus 223 ~~~v~~yD~~--t~~W~~l~~~g~-~P-~~R~~~aa~~~~---~~-~lyV~GG~~~~~~~ndv~~yd~~t~~W~~v~~~g 294 (717)
...+++||++ +.+-.++...+. .. ..-.-|...++. +. +|||+--.. ....-.++.+++.+...+-+....
T Consensus 82 ~G~I~~~d~~~~~~~~~~l~~~g~~~~~~~f~PhGi~~~~d~dg~~~L~Vvnh~~-~~s~ielf~~d~~~~~~~~~~~~~ 160 (355)
T 3sre_A 82 SGKILLMDLNEKEPAVSELEIIGNTLDISSFNPHGISTFIDDDNTVYLLVVNHPG-SSSTVEVFKFQEEEKSLLHLKTIR 160 (355)
T ss_dssp CCEEEEEETTSSSCCEEECEEECSSCCGGGCCEEEEEEEECTTCCEEEEEEECST-TCCEEEEEEEETTTTEEEEEEEEC
T ss_pred CCeEEEEecCCCCCceEEEEccCCCCCcCceeeeeeEEEECCCCcEEEEEEECCC-CCCeEEEEEEECCCCEEEEEeccc
Confidence 4568888886 345555543332 11 122334444433 32 577774321 112335777788777777665533
Q ss_pred CCCCCCcceEEEEECCEEEEEecC--CC----------CCccCeEEEEECCCCcEEEeecCCCCCCCCCcceEEEEEEeC
Q 005043 295 FHPSPRAGCCGVLCGTKWYIAGGG--SR----------KKRHAETLIFDILKGEWSVAITSPSSSVTSNKGFTLVLVQHK 362 (717)
Q Consensus 295 ~~P~~R~~~sav~~~~~IyV~GG~--~~----------~~~~~dv~~yD~~t~~W~~l~~~p~~~~~~r~g~s~v~v~~~ 362 (717)
..+..+..-..+.-++.+|+-+.. +. ......+++||+. +.+.+... ...-.+. ++ .+
T Consensus 161 g~~~~~pND~~v~~~G~fyvt~~~~ftd~~~~~~e~~~~~~~g~vyr~d~~--~~~~~~~~------l~~pNGi-a~-sp 230 (355)
T 3sre_A 161 HKLLPSVNDIVAVGPEHFYATNDHYFIDPYLKSWEMHLGLAWSFVTYYSPN--DVRVVAEG------FDFANGI-NI-SP 230 (355)
T ss_dssp CTTCSSEEEEEEEETTEEEEEESCSCSSHHHHHHHHHTTCCCEEEEEECTT--CCEEEEEE------ESSEEEE-EE-CT
T ss_pred cCCCCCCceEEEeCCCCEEecCCcEeCCcccccchhhccCCccEEEEEECC--eEEEeecC------CcccCcc-eE-CC
Confidence 344555555556668999886542 11 1234578899884 45544310 0111222 22 23
Q ss_pred CCcEEEEEcCCCCCCCCeEEEEEccC
Q 005043 363 EKDFLVAFGGIKKEPSNQVEVLSIEK 388 (717)
Q Consensus 363 ~~~~I~v~GG~~~~~~n~v~vyd~~~ 388 (717)
++..+|+.-.. ...|++|++..
T Consensus 231 Dg~~lYvadt~----~~~I~~~~~~~ 252 (355)
T 3sre_A 231 DGKYVYIAELL----AHKIHVYEKHA 252 (355)
T ss_dssp TSSEEEEEEGG----GTEEEEEEECT
T ss_pred CCCEEEEEeCC----CCeEEEEEECC
Confidence 45567765432 24799999864
No 496
>3qhy_B Beta-lactamase inhibitory protein II; enyzme-inhibitor complex, beta-propeller, protein:protein interaction; 2.06A {Streptomyces exfoliatus} PDB: 3qi0_A 1jtd_B
Probab=26.90 E-value=4.7e+02 Score=25.84 Aligned_cols=135 Identities=13% Similarity=0.016 Sum_probs=64.1
Q ss_pred cceEEEEECCEEEEEeccCCCCCCc-eEEEEEECCCCcEEEeeecCCCCCCceeeEEEEECCEEEEEccccCCCCCcCcE
Q 005043 148 RGHSLISWGKKVLLVGGKTDSGSDR-VSVWTFDTETECWSVVEAKGDIPVARSGHTVVRASSVLILFGGEDGKRRKLNDL 226 (717)
Q Consensus 148 ~~hs~v~~~~~Iyv~GG~~~~~~~~-~~v~~yD~~t~~W~~l~~~g~~P~~R~~hs~~~~~~~Lyv~GG~~~~~~~~~~v 226 (717)
..|+++.-++.+|.+|--....... ..+ ......+.. . ..|+++..++.+|.+|-.... + +..
T Consensus 72 ~~hs~~l~~G~v~~wG~n~~Gqlg~P~~~------~~~v~~ia~------G-~~hs~al~~G~v~~wG~n~~g-q-lg~- 135 (282)
T 3qhy_B 72 NYHSLALKDGEVIAWGGNEDGQTTVPAEA------RSGVDAIAA------G-AWASYALKDGKVIAWGDDSDG-Q-TTV- 135 (282)
T ss_dssp SSEEEEEETTEEEEEECCTTSTTCCCGGG------SSSEEEEEE------E-TTEEEEEETTEEEEEECCTTS-T-TSC-
T ss_pred CCEEEEEECCEEEEeeCCCCCCCCCCccc------CCCeEEEEC------c-CCEEEEEeCCeEEEecCCCCC-c-CCC-
Confidence 4577776789999998543211110 000 123333332 1 234444448999999853321 1 110
Q ss_pred EEEEcCCCceEeccCCCCCCCCCcccEEEEECCcEEEEEcCCCCCCCCCeEEEEECCCCcEEEeecCCCCCCCCcceEEE
Q 005043 227 HMFDLKSLTWLPLHCTGTGPSPRSNHVAALYDDKNLLIFGGSSKSKTLNDLYSLDFETMIWTRIKIRGFHPSPRAGCCGV 306 (717)
Q Consensus 227 ~~yD~~t~~W~~l~~~g~~P~~R~~~aa~~~~~~~lyV~GG~~~~~~~ndv~~yd~~t~~W~~v~~~g~~P~~R~~~sav 306 (717)
-.........+. .-..|+++.-++. +|.+|-......-.. .........+.. -..|+++
T Consensus 136 --~~~~~~~i~~i~-------~G~~~~~~l~~G~-v~~wG~n~~gqlg~p----~~~~~~v~~i~~-------G~~hs~a 194 (282)
T 3qhy_B 136 --PAEAQSGVTALD-------GGVYTALAVKNGG-VIAWGDNYFGQTTVP----AEAQSGVDDVAG-------GIFHSLA 194 (282)
T ss_dssp --CGGGGSSEEEEE-------ECSSEEEEEETTE-EEEEECCTTSTTSCC----GGGGSSEEEEEE-------CSSEEEE
T ss_pred --CccCCCCeEEEE-------cccCEEEEEECCE-EEEecCCCCCCCCCc----eecCCCeEEEEe-------cCCEEEE
Confidence 000111233332 2235566655555 999886543221100 000122333322 2245555
Q ss_pred EECCEEEEEecCC
Q 005043 307 LCGTKWYIAGGGS 319 (717)
Q Consensus 307 ~~~~~IyV~GG~~ 319 (717)
.-++++|.+|-..
T Consensus 195 l~~G~v~~wG~n~ 207 (282)
T 3qhy_B 195 LKDGKVIAWGDNR 207 (282)
T ss_dssp EETTEEEEEECCT
T ss_pred EECCeEEEEECCC
Confidence 5789999999644
No 497
>2zqm_A Prefoldin beta subunit 1; chaperone; HET: CIT; 1.90A {Thermococcus SP} PDB: 2zdi_A
Probab=26.80 E-value=1.3e+02 Score=25.65 Aligned_cols=25 Identities=12% Similarity=0.235 Sum_probs=16.6
Q ss_pred cchhhHHHHHHHHHHHHHHhhhhcc
Q 005043 654 RLEHDVAFLKAVLDDTQKELHSTRG 678 (717)
Q Consensus 654 ~~~~~~~~~~~~~~~~~~~~~~~~~ 678 (717)
.||....+|+..++++++.+...+.
T Consensus 74 ~L~~~~e~ie~~i~~le~~~~~l~~ 98 (117)
T 2zqm_A 74 ELKEKIETLEVRLNALERQEKKLNE 98 (117)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4556677777777777777766554
No 498
>1a93_B MAX protein, coiled coil, LZ; leucine zipper, 2D solution structure, H-bonds, buried salt bridge, proto-oncogene, nuclear protein; NMR {Mus musculus} SCOP: h.1.3.1 PDB: 2a93_B
Probab=26.69 E-value=55 Score=22.21 Aligned_cols=23 Identities=26% Similarity=0.365 Sum_probs=19.3
Q ss_pred HHHHHHHHHHHHHHhcchhHHHH
Q 005043 568 YQFYESKMAALIRKNGILEGQLA 590 (717)
Q Consensus 568 ~~~~~~~~~~~~~~~~~~~~~~~ 590 (717)
.+....+|-++.+.|.+||.|+-
T Consensus 9 n~a~qqDIddlkrQN~~Le~Qir 31 (34)
T 1a93_B 9 NDTHQQDIDDLKRQNALLEQQVR 31 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHhhHhhHHHHHHHHHHHHHHHH
Confidence 35677889999999999999974
No 499
>1gu4_A CAAT/enhancer binding protein beta; transcription/DNA, protein-DNA complex, transcription factor, BZIP, C/EBP; 1.80A {Homo sapiens} SCOP: h.1.3.1 PDB: 1gtw_A 1gu5_A 1h88_A 1h8a_A 1io4_A 2e43_A* 2e42_A* 1h89_A 1ci6_B 1nwq_A
Probab=26.69 E-value=1.3e+02 Score=24.39 Aligned_cols=53 Identities=21% Similarity=0.281 Sum_probs=0.0
Q ss_pred HhhhhhHHhhHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhcccccccccCCccchhhHHHHHHHH
Q 005043 600 EKNFSSVLKSRQEMEKKLADSLKEMELLKEKLAGLELAQEEANSLSNIVHSDNVRLEHDVAFLKAVL 666 (717)
Q Consensus 600 e~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 666 (717)
+||=..|=+||+.-..+-.++..+++.|...=+.|+..=+. |+.+|++||.+|
T Consensus 21 ~rNN~AakrSR~krk~r~~e~~~r~~~L~~eN~~L~~~v~~--------------L~~E~~~Lr~ll 73 (78)
T 1gu4_A 21 ERNNIAVRKSRDKAKMRNLETQHKVLELTAENERLQKKVEQ--------------LSRELSTLRNLF 73 (78)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------------HHHHHHHHHTTT
T ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHH
No 500
>3htk_A Structural maintenance of chromosomes protein 5; SUMO E3 ligase, SPL-ring, ring, ATP-binding, chromosomal protein, coiled coil, DNA damage; 2.31A {Saccharomyces cerevisiae}
Probab=26.61 E-value=1.8e+02 Score=21.70 Aligned_cols=55 Identities=16% Similarity=0.109 Sum_probs=0.0
Q ss_pred HHHHhcchhHHHHHHHhhHHHHHhhhhhHHhhHHHHHHHHHHHHHHHHHHHHHHh
Q 005043 578 LIRKNGILEGQLAAALVNREAAEKNFSSVLKSRQEMEKKLADSLKEMELLKEKLA 632 (717)
Q Consensus 578 ~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 632 (717)
++.....++..+...-.....-+..+.+...+--++.+.|..+..++..+|.++.
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~l~~~~~~I~~~k~qi~ 57 (60)
T 3htk_A 3 FANTKKTLENQVEELTEKCSLKTDEFLKAKEKINEIFEKLNTIRDEVIKKKNQNE 57 (60)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Done!