BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 005044
(717 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|4HXT|A Chain A, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or329
Length = 252
Score = 93.6 bits (231), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 69/203 (33%), Positives = 106/203 (52%), Gaps = 2/203 (0%)
Query: 197 SSIKTRVRMEGGIPPLVELLEFTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLIL 256
S+IK V GG+ LV+LL TD++VQ+ AA AL +A DE IV+ + L+
Sbjct: 35 SAIKAIVDA-GGVEVLVKLLTSTDSEVQKEAARALANIASGPDEAIKAIVDAGGVEVLVK 93
Query: 257 MLRSEDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLSSCCSESQREAALLLG 316
+L S DS + EA + N+ K ++ AG ++ ++ LL+S SE Q+EAA L
Sbjct: 94 LLTSTDSEVQKEAARALANIASGPDEAIKAIVDAGGVEVLVKLLTSTDSEVQKEAARALA 153
Query: 317 QFAATDSDCKVHIVQRGAVRPLIEMLQSPDVQLREMSAFALGRLAQDMHNQ-AGIAHNGG 375
A+ + IV G V L+++L S D ++++ +A AL +A + I GG
Sbjct: 154 NIASGPDEAIKAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIASGPTSAIKAIVDAGG 213
Query: 376 LVPLLKLLDSKNGSLQHNAAFAL 398
+ L KLL S + +Q A AL
Sbjct: 214 VEVLQKLLTSTDSEVQKEAQRAL 236
Score = 89.4 bits (220), Expect = 7e-18, Method: Compositional matrix adjust.
Identities = 77/235 (32%), Positives = 118/235 (50%), Gaps = 11/235 (4%)
Query: 125 LKPFEHEVEKGSAFALGLLAVKPEHQ-QLIVDNGALSHLVNLLKRHMDSNCSRAVNSVIR 183
L + E +K +A L +A P + IVD G + LV LL DS V +
Sbjct: 11 LTSTDSETQKEAARDLAEIASGPASAIKAIVDAGGVEVLVKLL-TSTDSE-------VQK 62
Query: 184 RAADAITNLAHE-NSSIKTRVRMEGGIPPLVELLEFTDTKVQRAAAGALRTLAFKNDENK 242
AA A+ N+A + +IK V GG+ LV+LL TD++VQ+ AA AL +A DE
Sbjct: 63 EAARALANIASGPDEAIKAIVDA-GGVEVLVKLLTSTDSEVQKEAARALANIASGPDEAI 121
Query: 243 NQIVECNALPTLILMLRSEDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLSS 302
IV+ + L+ +L S DS + EA + N+ K ++ AG ++ ++ LL+S
Sbjct: 122 KAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIASGPDEAIKAIVDAGGVEVLVKLLTS 181
Query: 303 CCSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQSPDVQLREMSAFAL 357
SE Q+EAA L A+ + IV G V L ++L S D ++++ + AL
Sbjct: 182 TDSEVQKEAARALANIASGPTSAIKAIVDAGGVEVLQKLLTSTDSEVQKEAQRAL 236
Score = 64.3 bits (155), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 69/210 (32%), Positives = 100/210 (47%), Gaps = 30/210 (14%)
Query: 63 VNVLNTTFSWLEADRAAAKRATHVLAELAKN-EEVVNWIVEGGAVPALVKHLQAPPTSEA 121
V +L +T S ++ K A LA +A +E + IV+ G V LVK L +
Sbjct: 50 VKLLTSTDSEVQ------KEAARALANIASGPDEAIKAIVDAGGVEVLVKLLTS------ 97
Query: 122 DRNLKPFEHEVEKGSAFALGLLAVKPEHQ-QLIVDNGALSHLVNLLKRHMDSNCSRAVNS 180
+ EV+K +A AL +A P+ + IVD G + LV LL DS
Sbjct: 98 ------TDSEVQKEAARALANIASGPDEAIKAIVDAGGVEVLVKLL-TSTDSE------- 143
Query: 181 VIRRAADAITNLAHE-NSSIKTRVRMEGGIPPLVELLEFTDTKVQRAAAGALRTLAFKND 239
V + AA A+ N+A + +IK V GG+ LV+LL TD++VQ+ AA AL +A
Sbjct: 144 VQKEAARALANIASGPDEAIKAIVDA-GGVEVLVKLLTSTDSEVQKEAARALANIASGPT 202
Query: 240 ENKNQIVECNALPTLILMLRSEDSAIHYEA 269
IV+ + L +L S DS + EA
Sbjct: 203 SAIKAIVDAGGVEVLQKLLTSTDSEVQKEA 232
Score = 63.5 bits (153), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 63/234 (26%), Positives = 105/234 (44%), Gaps = 38/234 (16%)
Query: 293 LQPVIGLLSSCCSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQSPDVQLREM 352
++ ++ LL+S SE+Q+EAA L + A+ + IV G V L+++L S D ++++
Sbjct: 4 VEKLVKLLTSTDSETQKEAARDLAEIASGPASAIKAIVDAGGVEVLVKLLTSTDSEVQKE 63
Query: 353 SAFALGRLAQ--DMHNQAGIAHNGGLVPLLKLLDSKNGSLQHNAAFALYGLADNEDN-VA 409
+A AL +A D +A I GG+ L+KLL S + +Q AA AL +A D +
Sbjct: 64 AARALANIASGPDEAIKA-IVDAGGVEVLVKLLTSTDSEVQKEAARALANIASGPDEAIK 122
Query: 410 DFIRVGGVQKLQDGEFIVQATKDCVAKTLKRLEEKIHGRVLNHLLYLMRVAEKGVQRRVA 469
+ GGV+ L+ L+ + VQ+ A
Sbjct: 123 AIVDAGGVE---------------------------------VLVKLLTSTDSEVQKEAA 149
Query: 470 LALAHLCS-PDDQRTIFIDXXXXXXXXXXXXSTNPKQQLDGAVALFKLANKATT 522
ALA++ S PD+ +D ST+ + Q + A AL +A+ T+
Sbjct: 150 RALANIASGPDEAIKAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIASGPTS 203
>pdb|3HQI|A Chain A, Structures Of Spop-Substrate Complexes: Insights Into
Molecular Architectures Of Btb-Cul3 Ubiquitin Ligases:
SpopmathxBTB3-Box-Pucsbc1
pdb|3HQI|B Chain B, Structures Of Spop-Substrate Complexes: Insights Into
Molecular Architectures Of Btb-Cul3 Ubiquitin Ligases:
SpopmathxBTB3-Box-Pucsbc1
pdb|3HU6|A Chain A, Structures Of Spop-Substrate Complexes: Insights Into
Molecular Architectures Of Btb-Cul3 Ubiquitin Ligases:
SpopmathxBTB3-Box-Pucsbc1
pdb|3HU6|B Chain B, Structures Of Spop-Substrate Complexes: Insights Into
Molecular Architectures Of Btb-Cul3 Ubiquitin Ligases:
SpopmathxBTB3-Box-Pucsbc1
Length = 312
Score = 87.8 bits (216), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 52/147 (35%), Positives = 77/147 (52%), Gaps = 3/147 (2%)
Query: 535 PQVYLGDQF---VNNATLSDVTFLVEGRRFYAHRICLLASSDAFRAMFDGGYREKDARDI 591
P+ L D+ N+ +D V G+ F AH+ L A S F AMF+ E +
Sbjct: 157 PECRLADELGGLWENSRFTDCCLCVAGQEFQAHKAILAARSPVFSAMFEHEMEESKKNRV 216
Query: 592 EIPNIRWEVFELMMRFIYTGSVDVTLDIAQDLLRAADQYLLEGLKRLCEYTIAQDISLEN 651
EI ++ EVF+ MM FIYTG +A DLL AAD+Y LE LK +CE + ++S+EN
Sbjct: 217 EINDVEPEVFKEMMCFIYTGKAPNLDKMADDLLAAADKYALERLKVMCEDALCSNLSVEN 276
Query: 652 VSSMYELSEAFHAISLRHTCILYIMEH 678
+ + L++ A L+ + +I H
Sbjct: 277 AAEILILADLHSADQLKTQAVDFINYH 303
>pdb|4EOZ|A Chain A, Crystal Structure Of The Spop Btb Domain Complexed With
The Cul3 N- Terminal Domain
pdb|4EOZ|C Chain C, Crystal Structure Of The Spop Btb Domain Complexed With
The Cul3 N- Terminal Domain
Length = 145
Score = 87.0 bits (214), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 50/138 (36%), Positives = 73/138 (52%), Gaps = 3/138 (2%)
Query: 534 TPQVYLGDQF---VNNATLSDVTFLVEGRRFYAHRICLLASSDAFRAMFDGGYREKDARD 590
P+ L D+ N+ +D V G+ F AH+ L A S F AMF+ E
Sbjct: 7 VPECRLADELGGLWENSRFTDCCLCVAGQEFQAHKAILAARSPVFSAMFEHEMEESKKNR 66
Query: 591 IEIPNIRWEVFELMMRFIYTGSVDVTLDIAQDLLRAADQYLLEGLKRLCEYTIAQDISLE 650
+EI ++ EVF+ MM FIYTG +A DLL AAD+Y LE LK +CE + ++S+E
Sbjct: 67 VEINDVEPEVFKEMMCFIYTGKAPNLDKMADDLLAAADKYALERLKVMCEDALCSNLSVE 126
Query: 651 NVSSMYELSEAFHAISLR 668
N + + L++ A L+
Sbjct: 127 NAAEILILADLHSADQLK 144
>pdb|3TPM|A Chain A, Crystal Structure Of Mal Rpel Domain In Complex With
Importin-Alpha
Length = 422
Score = 78.2 bits (191), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 72/294 (24%), Positives = 134/294 (45%), Gaps = 24/294 (8%)
Query: 100 IVEGGAVPALVKHLQAPPTSEADRNLKPFEHEVEKGSAFALGLLAVKPEHQQLIVDNGAL 159
+V+GGA+PA + L +P +++ + + GSAF + L++ +GA+
Sbjct: 84 VVDGGAIPAFISLLASPHAHISEQAVWALGNIAGDGSAF-----------RDLVIKHGAI 132
Query: 160 SHLVNLLKRHMDSNCSRAVNSVIRRAADAITNLAHENSSIKTRVRMEGGIPPLVELLEFT 219
L+ LL + S +R ++NL + +E +P LV LL
Sbjct: 133 DPLLALLAV---PDLSTLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTLVRLLHHN 189
Query: 220 DTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSEDSAIHYEAVGVIGNLVHS 279
D +V + A+ L +E +V+ +P L+ +L + + I A+ IGN+V
Sbjct: 190 DPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGATELPIVTPALRAIGNIVTG 249
Query: 280 SPNIKKEVLAAGALQPVIGLLSSCCSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLI 339
+ ++V+ AGAL LL++ + Q+EA + A D +V G V L+
Sbjct: 250 TDEQTQKVIDAGALAVFPSLLTNPKTNIQKEATWTMSNITAGRQDQIQQVVNHGLVPFLV 309
Query: 340 EMLQSPDVQLREMSAFAL------GRLAQDMHNQAGIAHNGGLVPLLKLLDSKN 387
+L D + ++ +A+A+ G + Q ++ + H G + PL+ LL +K+
Sbjct: 310 GVLSKADFKTQKEAAWAITNYTSGGTVEQIVY----LVHCGIIEPLMNLLSAKD 359
Score = 50.1 bits (118), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 45/205 (21%), Positives = 84/205 (40%), Gaps = 17/205 (8%)
Query: 225 RAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSED-SAIHYEAVGVIGNLVHSSPNI 283
+A A + L+ + + I+ +P + L D S I +E+ + N+ +
Sbjct: 21 QATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGKTDCSPIQFESAWALTNIASGTSEQ 80
Query: 284 KKEVLAAGALQPVIGLLSSCCSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQ 343
K V+ GA+ I LL+S + +A LG A S + +++ GA+ PL+ +L
Sbjct: 81 TKAVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGDGSAFRDLVIKHGAIDPLLALLA 140
Query: 344 SPDVQLREMSAFALGRLAQDMHNQAGIAHNGGLVP-----------LLKLLDSKNGSLQH 392
PD +S A G L + + N P L++LL + +
Sbjct: 141 VPD-----LSTLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTLVRLLHHNDPEVLA 195
Query: 393 NAAFALYGLADNEDNVADFIRVGGV 417
++ +A+ L D + + + GV
Sbjct: 196 DSCWAISYLTDGPNERIEMVVKKGV 220
Score = 47.4 bits (111), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 30/96 (31%), Positives = 48/96 (50%), Gaps = 1/96 (1%)
Query: 207 GGIPPLVELLEFTD-TKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSEDSAI 265
G IP V L TD + +Q +A AL +A E +V+ A+P I +L S + I
Sbjct: 45 GLIPKFVSFLGKTDCSPIQFESAWALTNIASGTSEQTKAVVDGGAIPAFISLLASPHAHI 104
Query: 266 HYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLS 301
+AV +GN+ + V+ GA+ P++ LL+
Sbjct: 105 SEQAVWALGNIAGDGSAFRDLVIKHGAIDPLLALLA 140
Score = 35.4 bits (80), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 46/191 (24%), Positives = 80/191 (41%), Gaps = 28/191 (14%)
Query: 95 EVVNWIVEGGAVPALVKHLQA---PPTSEADRNLKPFEHEVEKGSAFALGLLAVKPEHQ- 150
E + +V+ G VP LVK L A P + A R A+G + + Q
Sbjct: 210 ERIEMVVKKGVVPQLVKLLGATELPIVTPALR---------------AIGNIVTGTDEQT 254
Query: 151 QLIVDNGALSHLVNLLKRHMDSNCSRAVNSVIRRAADAITNLAHENSSIKTRVRMEGGIP 210
Q ++D GAL+ +LL + ++ + A ++N+ +V G +P
Sbjct: 255 QKVIDAGALAVFPSLL--------TNPKTNIQKEATWTMSNITAGRQDQIQQVVNHGLVP 306
Query: 211 PLVELLEFTDTKVQRAAAGALRTLAFKND-ENKNQIVECNALPTLILMLRSEDSAIHYEA 269
LV +L D K Q+ AA A+ E +V C + L+ +L ++D+ I
Sbjct: 307 FLVGVLSKADFKTQKEAAWAITNYTSGGTVEQIVYLVHCGIIEPLMNLLSAKDTKIIQVI 366
Query: 270 VGVIGNLVHSS 280
+ I N+ ++
Sbjct: 367 LDAISNIFQAA 377
Score = 29.3 bits (64), Expect = 8.7, Method: Compositional matrix adjust.
Identities = 41/184 (22%), Positives = 81/184 (44%), Gaps = 32/184 (17%)
Query: 100 IVEGGAVPALVKHLQAPPTSEADRNLKPFEHEVEKGSAFALG-LLAVKPEHQQLIVDNGA 158
+++ GA+ L P T+ ++K + + + + A + + Q +V++G
Sbjct: 257 VIDAGALAVFPSLLTNPKTN------------IQKEATWTMSNITAGRQDQIQQVVNHGL 304
Query: 159 LSHLVNLLKRHMDSNCSRAVNSVIRRAADAITNLAHENSSIKTRVRME--GGIPPLVELL 216
+ LV +L S+A + AA AITN +++ V + G I PL+ LL
Sbjct: 305 VPFLVGVL--------SKADFKTQKEAAWAITNYT-SGGTVEQIVYLVHCGIIEPLMNLL 355
Query: 217 EFTDTKVQRAAAGALRTLAFKNDENKNQ-------IVECNALPTLILMLRSEDSAIHYEA 269
DTK+ + A+ + F+ E + I EC L + + R E+ +++ +
Sbjct: 356 SAKDTKIIQVILDAISNI-FQAAEKLGETEKLSIMIEECGGLDKIEALQRHENESVYKAS 414
Query: 270 VGVI 273
+ +I
Sbjct: 415 LNLI 418
>pdb|3VE6|A Chain A, Crystal Structure Analysis Of Venezuelan Equine
Encephalitis Virus Capsid Protein Nls And Importin Alpha
Length = 426
Score = 78.2 bits (191), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 72/294 (24%), Positives = 134/294 (45%), Gaps = 24/294 (8%)
Query: 100 IVEGGAVPALVKHLQAPPTSEADRNLKPFEHEVEKGSAFALGLLAVKPEHQQLIVDNGAL 159
+V+GGA+PA + L +P +++ + + GSAF + L++ +GA+
Sbjct: 88 VVDGGAIPAFISLLASPHAHISEQAVWALGNIAGDGSAF-----------RDLVIKHGAI 136
Query: 160 SHLVNLLKRHMDSNCSRAVNSVIRRAADAITNLAHENSSIKTRVRMEGGIPPLVELLEFT 219
L+ LL + S +R ++NL + +E +P LV LL
Sbjct: 137 DPLLALLAV---PDLSTLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTLVRLLHHN 193
Query: 220 DTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSEDSAIHYEAVGVIGNLVHS 279
D +V + A+ L +E +V+ +P L+ +L + + I A+ IGN+V
Sbjct: 194 DPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGATELPIVTPALRAIGNIVTG 253
Query: 280 SPNIKKEVLAAGALQPVIGLLSSCCSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLI 339
+ ++V+ AGAL LL++ + Q+EA + A D +V G V L+
Sbjct: 254 TDEQTQKVIDAGALAVFPSLLTNPKTNIQKEATWTMSNITAGRQDQIQQVVNHGLVPFLV 313
Query: 340 EMLQSPDVQLREMSAFAL------GRLAQDMHNQAGIAHNGGLVPLLKLLDSKN 387
+L D + ++ +A+A+ G + Q ++ + H G + PL+ LL +K+
Sbjct: 314 GVLSKADFKTQKEAAWAITNYTSGGTVEQIVY----LVHCGIIEPLMNLLSAKD 363
Score = 50.1 bits (118), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 45/205 (21%), Positives = 84/205 (40%), Gaps = 17/205 (8%)
Query: 225 RAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSED-SAIHYEAVGVIGNLVHSSPNI 283
+A A + L+ + + I+ +P + L D S I +E+ + N+ +
Sbjct: 25 QATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGKTDCSPIQFESAWALTNIASGTSEQ 84
Query: 284 KKEVLAAGALQPVIGLLSSCCSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQ 343
K V+ GA+ I LL+S + +A LG A S + +++ GA+ PL+ +L
Sbjct: 85 TKAVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGDGSAFRDLVIKHGAIDPLLALLA 144
Query: 344 SPDVQLREMSAFALGRLAQDMHNQAGIAHNGGLVP-----------LLKLLDSKNGSLQH 392
PD +S A G L + + N P L++LL + +
Sbjct: 145 VPD-----LSTLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTLVRLLHHNDPEVLA 199
Query: 393 NAAFALYGLADNEDNVADFIRVGGV 417
++ +A+ L D + + + GV
Sbjct: 200 DSCWAISYLTDGPNERIEMVVKKGV 224
Score = 47.8 bits (112), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 30/96 (31%), Positives = 48/96 (50%), Gaps = 1/96 (1%)
Query: 207 GGIPPLVELLEFTD-TKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSEDSAI 265
G IP V L TD + +Q +A AL +A E +V+ A+P I +L S + I
Sbjct: 49 GLIPKFVSFLGKTDCSPIQFESAWALTNIASGTSEQTKAVVDGGAIPAFISLLASPHAHI 108
Query: 266 HYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLS 301
+AV +GN+ + V+ GA+ P++ LL+
Sbjct: 109 SEQAVWALGNIAGDGSAFRDLVIKHGAIDPLLALLA 144
Score = 35.4 bits (80), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 46/191 (24%), Positives = 80/191 (41%), Gaps = 28/191 (14%)
Query: 95 EVVNWIVEGGAVPALVKHLQA---PPTSEADRNLKPFEHEVEKGSAFALGLLAVKPEHQ- 150
E + +V+ G VP LVK L A P + A R A+G + + Q
Sbjct: 214 ERIEMVVKKGVVPQLVKLLGATELPIVTPALR---------------AIGNIVTGTDEQT 258
Query: 151 QLIVDNGALSHLVNLLKRHMDSNCSRAVNSVIRRAADAITNLAHENSSIKTRVRMEGGIP 210
Q ++D GAL+ +LL + ++ + A ++N+ +V G +P
Sbjct: 259 QKVIDAGALAVFPSLL--------TNPKTNIQKEATWTMSNITAGRQDQIQQVVNHGLVP 310
Query: 211 PLVELLEFTDTKVQRAAAGALRTLAFKND-ENKNQIVECNALPTLILMLRSEDSAIHYEA 269
LV +L D K Q+ AA A+ E +V C + L+ +L ++D+ I
Sbjct: 311 FLVGVLSKADFKTQKEAAWAITNYTSGGTVEQIVYLVHCGIIEPLMNLLSAKDTKIIQVI 370
Query: 270 VGVIGNLVHSS 280
+ I N+ ++
Sbjct: 371 LDAISNIFQAA 381
Score = 29.3 bits (64), Expect = 9.0, Method: Compositional matrix adjust.
Identities = 41/184 (22%), Positives = 81/184 (44%), Gaps = 32/184 (17%)
Query: 100 IVEGGAVPALVKHLQAPPTSEADRNLKPFEHEVEKGSAFALG-LLAVKPEHQQLIVDNGA 158
+++ GA+ L P T+ ++K + + + + A + + Q +V++G
Sbjct: 261 VIDAGALAVFPSLLTNPKTN------------IQKEATWTMSNITAGRQDQIQQVVNHGL 308
Query: 159 LSHLVNLLKRHMDSNCSRAVNSVIRRAADAITNLAHENSSIKTRVRME--GGIPPLVELL 216
+ LV +L S+A + AA AITN +++ V + G I PL+ LL
Sbjct: 309 VPFLVGVL--------SKADFKTQKEAAWAITNYT-SGGTVEQIVYLVHCGIIEPLMNLL 359
Query: 217 EFTDTKVQRAAAGALRTLAFKNDENKNQ-------IVECNALPTLILMLRSEDSAIHYEA 269
DTK+ + A+ + F+ E + I EC L + + R E+ +++ +
Sbjct: 360 SAKDTKIIQVILDAISNI-FQAAEKLGETEKLSIMIEECGGLDKIEALQRHENESVYKAS 418
Query: 270 VGVI 273
+ +I
Sbjct: 419 LNLI 422
>pdb|3L3Q|A Chain A, Mouse Importin Alpha-Peptm Nls Peptide Complex
Length = 427
Score = 78.2 bits (191), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 72/294 (24%), Positives = 134/294 (45%), Gaps = 24/294 (8%)
Query: 100 IVEGGAVPALVKHLQAPPTSEADRNLKPFEHEVEKGSAFALGLLAVKPEHQQLIVDNGAL 159
+V+GGA+PA + L +P +++ + + GSAF + L++ +GA+
Sbjct: 88 VVDGGAIPAFISLLASPHAHISEQAVWALGNIAGDGSAF-----------RDLVIKHGAI 136
Query: 160 SHLVNLLKRHMDSNCSRAVNSVIRRAADAITNLAHENSSIKTRVRMEGGIPPLVELLEFT 219
L+ LL + S +R ++NL + +E +P LV LL
Sbjct: 137 DPLLALLAV---PDLSTLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTLVRLLHHN 193
Query: 220 DTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSEDSAIHYEAVGVIGNLVHS 279
D +V + A+ L +E +V+ +P L+ +L + + I A+ IGN+V
Sbjct: 194 DPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGATELPIVTPALRAIGNIVTG 253
Query: 280 SPNIKKEVLAAGALQPVIGLLSSCCSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLI 339
+ ++V+ AGAL LL++ + Q+EA + A D +V G V L+
Sbjct: 254 TDEQTQKVIDAGALAVFPSLLTNPKTNIQKEATWTMSNITAGRQDQIQQVVNHGLVPFLV 313
Query: 340 EMLQSPDVQLREMSAFAL------GRLAQDMHNQAGIAHNGGLVPLLKLLDSKN 387
+L D + ++ +A+A+ G + Q ++ + H G + PL+ LL +K+
Sbjct: 314 GVLSKADFKTQKEAAWAITNYTSGGTVEQIVY----LVHCGIIEPLMNLLSAKD 363
Score = 50.1 bits (118), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 45/205 (21%), Positives = 84/205 (40%), Gaps = 17/205 (8%)
Query: 225 RAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSED-SAIHYEAVGVIGNLVHSSPNI 283
+A A + L+ + + I+ +P + L D S I +E+ + N+ +
Sbjct: 25 QATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGKTDCSPIQFESAWALTNIASGTSEQ 84
Query: 284 KKEVLAAGALQPVIGLLSSCCSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQ 343
K V+ GA+ I LL+S + +A LG A S + +++ GA+ PL+ +L
Sbjct: 85 TKAVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGDGSAFRDLVIKHGAIDPLLALLA 144
Query: 344 SPDVQLREMSAFALGRLAQDMHNQAGIAHNGGLVP-----------LLKLLDSKNGSLQH 392
PD +S A G L + + N P L++LL + +
Sbjct: 145 VPD-----LSTLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTLVRLLHHNDPEVLA 199
Query: 393 NAAFALYGLADNEDNVADFIRVGGV 417
++ +A+ L D + + + GV
Sbjct: 200 DSCWAISYLTDGPNERIEMVVKKGV 224
Score = 47.8 bits (112), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 30/96 (31%), Positives = 48/96 (50%), Gaps = 1/96 (1%)
Query: 207 GGIPPLVELLEFTD-TKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSEDSAI 265
G IP V L TD + +Q +A AL +A E +V+ A+P I +L S + I
Sbjct: 49 GLIPKFVSFLGKTDCSPIQFESAWALTNIASGTSEQTKAVVDGGAIPAFISLLASPHAHI 108
Query: 266 HYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLS 301
+AV +GN+ + V+ GA+ P++ LL+
Sbjct: 109 SEQAVWALGNIAGDGSAFRDLVIKHGAIDPLLALLA 144
Score = 35.4 bits (80), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 46/191 (24%), Positives = 80/191 (41%), Gaps = 28/191 (14%)
Query: 95 EVVNWIVEGGAVPALVKHLQA---PPTSEADRNLKPFEHEVEKGSAFALGLLAVKPEHQ- 150
E + +V+ G VP LVK L A P + A R A+G + + Q
Sbjct: 214 ERIEMVVKKGVVPQLVKLLGATELPIVTPALR---------------AIGNIVTGTDEQT 258
Query: 151 QLIVDNGALSHLVNLLKRHMDSNCSRAVNSVIRRAADAITNLAHENSSIKTRVRMEGGIP 210
Q ++D GAL+ +LL + ++ + A ++N+ +V G +P
Sbjct: 259 QKVIDAGALAVFPSLL--------TNPKTNIQKEATWTMSNITAGRQDQIQQVVNHGLVP 310
Query: 211 PLVELLEFTDTKVQRAAAGALRTLAFKND-ENKNQIVECNALPTLILMLRSEDSAIHYEA 269
LV +L D K Q+ AA A+ E +V C + L+ +L ++D+ I
Sbjct: 311 FLVGVLSKADFKTQKEAAWAITNYTSGGTVEQIVYLVHCGIIEPLMNLLSAKDTKIIQVI 370
Query: 270 VGVIGNLVHSS 280
+ I N+ ++
Sbjct: 371 LDAISNIFQAA 381
Score = 29.3 bits (64), Expect = 9.0, Method: Compositional matrix adjust.
Identities = 41/184 (22%), Positives = 81/184 (44%), Gaps = 32/184 (17%)
Query: 100 IVEGGAVPALVKHLQAPPTSEADRNLKPFEHEVEKGSAFALG-LLAVKPEHQQLIVDNGA 158
+++ GA+ L P T+ ++K + + + + A + + Q +V++G
Sbjct: 261 VIDAGALAVFPSLLTNPKTN------------IQKEATWTMSNITAGRQDQIQQVVNHGL 308
Query: 159 LSHLVNLLKRHMDSNCSRAVNSVIRRAADAITNLAHENSSIKTRVRME--GGIPPLVELL 216
+ LV +L S+A + AA AITN +++ V + G I PL+ LL
Sbjct: 309 VPFLVGVL--------SKADFKTQKEAAWAITNYT-SGGTVEQIVYLVHCGIIEPLMNLL 359
Query: 217 EFTDTKVQRAAAGALRTLAFKNDENKNQ-------IVECNALPTLILMLRSEDSAIHYEA 269
DTK+ + A+ + F+ E + I EC L + + R E+ +++ +
Sbjct: 360 SAKDTKIIQVILDAISNI-FQAAEKLGETEKLSIMIEECGGLDKIEALQRHENESVYKAS 418
Query: 270 VGVI 273
+ +I
Sbjct: 419 LNLI 422
>pdb|3BTR|C Chain C, Ar-Nls:importin-Alpha Complex
Length = 427
Score = 78.2 bits (191), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 72/294 (24%), Positives = 134/294 (45%), Gaps = 24/294 (8%)
Query: 100 IVEGGAVPALVKHLQAPPTSEADRNLKPFEHEVEKGSAFALGLLAVKPEHQQLIVDNGAL 159
+V+GGA+PA + L +P +++ + + GSAF + L++ +GA+
Sbjct: 89 VVDGGAIPAFISLLASPHAHISEQAVWALGNIAGDGSAF-----------RDLVIKHGAI 137
Query: 160 SHLVNLLKRHMDSNCSRAVNSVIRRAADAITNLAHENSSIKTRVRMEGGIPPLVELLEFT 219
L+ LL + S +R ++NL + +E +P LV LL
Sbjct: 138 DPLLALLAV---PDLSTLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTLVRLLHHN 194
Query: 220 DTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSEDSAIHYEAVGVIGNLVHS 279
D +V + A+ L +E +V+ +P L+ +L + + I A+ IGN+V
Sbjct: 195 DPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGATELPIVTPALRAIGNIVTG 254
Query: 280 SPNIKKEVLAAGALQPVIGLLSSCCSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLI 339
+ ++V+ AGAL LL++ + Q+EA + A D +V G V L+
Sbjct: 255 TDEQTQKVIDAGALAVFPSLLTNPKTNIQKEATWTMSNITAGRQDQIQQVVNHGLVPFLV 314
Query: 340 EMLQSPDVQLREMSAFAL------GRLAQDMHNQAGIAHNGGLVPLLKLLDSKN 387
+L D + ++ +A+A+ G + Q ++ + H G + PL+ LL +K+
Sbjct: 315 GVLSKADFKTQKEAAWAITNYTSGGTVEQIVY----LVHCGIIEPLMNLLSAKD 364
Score = 50.1 bits (118), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 45/205 (21%), Positives = 84/205 (40%), Gaps = 17/205 (8%)
Query: 225 RAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSED-SAIHYEAVGVIGNLVHSSPNI 283
+A A + L+ + + I+ +P + L D S I +E+ + N+ +
Sbjct: 26 QATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGKTDCSPIQFESAWALTNIASGTSEQ 85
Query: 284 KKEVLAAGALQPVIGLLSSCCSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQ 343
K V+ GA+ I LL+S + +A LG A S + +++ GA+ PL+ +L
Sbjct: 86 TKAVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGDGSAFRDLVIKHGAIDPLLALLA 145
Query: 344 SPDVQLREMSAFALGRLAQDMHNQAGIAHNGGLVP-----------LLKLLDSKNGSLQH 392
PD +S A G L + + N P L++LL + +
Sbjct: 146 VPD-----LSTLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTLVRLLHHNDPEVLA 200
Query: 393 NAAFALYGLADNEDNVADFIRVGGV 417
++ +A+ L D + + + GV
Sbjct: 201 DSCWAISYLTDGPNERIEMVVKKGV 225
Score = 47.4 bits (111), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 30/96 (31%), Positives = 48/96 (50%), Gaps = 1/96 (1%)
Query: 207 GGIPPLVELLEFTD-TKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSEDSAI 265
G IP V L TD + +Q +A AL +A E +V+ A+P I +L S + I
Sbjct: 50 GLIPKFVSFLGKTDCSPIQFESAWALTNIASGTSEQTKAVVDGGAIPAFISLLASPHAHI 109
Query: 266 HYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLS 301
+AV +GN+ + V+ GA+ P++ LL+
Sbjct: 110 SEQAVWALGNIAGDGSAFRDLVIKHGAIDPLLALLA 145
Score = 35.4 bits (80), Expect = 0.100, Method: Compositional matrix adjust.
Identities = 46/191 (24%), Positives = 80/191 (41%), Gaps = 28/191 (14%)
Query: 95 EVVNWIVEGGAVPALVKHLQA---PPTSEADRNLKPFEHEVEKGSAFALGLLAVKPEHQ- 150
E + +V+ G VP LVK L A P + A R A+G + + Q
Sbjct: 215 ERIEMVVKKGVVPQLVKLLGATELPIVTPALR---------------AIGNIVTGTDEQT 259
Query: 151 QLIVDNGALSHLVNLLKRHMDSNCSRAVNSVIRRAADAITNLAHENSSIKTRVRMEGGIP 210
Q ++D GAL+ +LL + ++ + A ++N+ +V G +P
Sbjct: 260 QKVIDAGALAVFPSLL--------TNPKTNIQKEATWTMSNITAGRQDQIQQVVNHGLVP 311
Query: 211 PLVELLEFTDTKVQRAAAGALRTLAFKND-ENKNQIVECNALPTLILMLRSEDSAIHYEA 269
LV +L D K Q+ AA A+ E +V C + L+ +L ++D+ I
Sbjct: 312 FLVGVLSKADFKTQKEAAWAITNYTSGGTVEQIVYLVHCGIIEPLMNLLSAKDTKIIQVI 371
Query: 270 VGVIGNLVHSS 280
+ I N+ ++
Sbjct: 372 LDAISNIFQAA 382
Score = 29.3 bits (64), Expect = 8.7, Method: Compositional matrix adjust.
Identities = 41/184 (22%), Positives = 81/184 (44%), Gaps = 32/184 (17%)
Query: 100 IVEGGAVPALVKHLQAPPTSEADRNLKPFEHEVEKGSAFALG-LLAVKPEHQQLIVDNGA 158
+++ GA+ L P T+ ++K + + + + A + + Q +V++G
Sbjct: 262 VIDAGALAVFPSLLTNPKTN------------IQKEATWTMSNITAGRQDQIQQVVNHGL 309
Query: 159 LSHLVNLLKRHMDSNCSRAVNSVIRRAADAITNLAHENSSIKTRVRME--GGIPPLVELL 216
+ LV +L S+A + AA AITN +++ V + G I PL+ LL
Sbjct: 310 VPFLVGVL--------SKADFKTQKEAAWAITNYT-SGGTVEQIVYLVHCGIIEPLMNLL 360
Query: 217 EFTDTKVQRAAAGALRTLAFKNDENKNQ-------IVECNALPTLILMLRSEDSAIHYEA 269
DTK+ + A+ + F+ E + I EC L + + R E+ +++ +
Sbjct: 361 SAKDTKIIQVILDAISNI-FQAAEKLGETEKLSIMIEECGGLDKIEALQRHENESVYKAS 419
Query: 270 VGVI 273
+ +I
Sbjct: 420 LNLI 423
>pdb|1IAL|A Chain A, Importin Alpha, Mouse
Length = 453
Score = 78.2 bits (191), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 72/294 (24%), Positives = 134/294 (45%), Gaps = 24/294 (8%)
Query: 100 IVEGGAVPALVKHLQAPPTSEADRNLKPFEHEVEKGSAFALGLLAVKPEHQQLIVDNGAL 159
+V+GGA+PA + L +P +++ + + GSAF + L++ +GA+
Sbjct: 115 VVDGGAIPAFISLLASPHAHISEQAVWALGNIAGDGSAF-----------RDLVIKHGAI 163
Query: 160 SHLVNLLKRHMDSNCSRAVNSVIRRAADAITNLAHENSSIKTRVRMEGGIPPLVELLEFT 219
L+ LL + S +R ++NL + +E +P LV LL
Sbjct: 164 DPLLALLAV---PDLSTLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTLVRLLHHN 220
Query: 220 DTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSEDSAIHYEAVGVIGNLVHS 279
D +V + A+ L +E +V+ +P L+ +L + + I A+ IGN+V
Sbjct: 221 DPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGATELPIVTPALRAIGNIVTG 280
Query: 280 SPNIKKEVLAAGALQPVIGLLSSCCSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLI 339
+ ++V+ AGAL LL++ + Q+EA + A D +V G V L+
Sbjct: 281 TDEQTQKVIDAGALAVFPSLLTNPKTNIQKEATWTMSNITAGRQDQIQQVVNHGLVPFLV 340
Query: 340 EMLQSPDVQLREMSAFAL------GRLAQDMHNQAGIAHNGGLVPLLKLLDSKN 387
+L D + ++ +A+A+ G + Q ++ + H G + PL+ LL +K+
Sbjct: 341 GVLSKADFKTQKEAAWAITNYTSGGTVEQIVY----LVHCGIIEPLMNLLSAKD 390
Score = 50.4 bits (119), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 45/205 (21%), Positives = 84/205 (40%), Gaps = 17/205 (8%)
Query: 225 RAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSED-SAIHYEAVGVIGNLVHSSPNI 283
+A A + L+ + + I+ +P + L D S I +E+ + N+ +
Sbjct: 52 QATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGKTDCSPIQFESAWALTNIASGTSEQ 111
Query: 284 KKEVLAAGALQPVIGLLSSCCSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQ 343
K V+ GA+ I LL+S + +A LG A S + +++ GA+ PL+ +L
Sbjct: 112 TKAVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGDGSAFRDLVIKHGAIDPLLALLA 171
Query: 344 SPDVQLREMSAFALGRLAQDMHNQAGIAHNGGLVP-----------LLKLLDSKNGSLQH 392
PD +S A G L + + N P L++LL + +
Sbjct: 172 VPD-----LSTLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTLVRLLHHNDPEVLA 226
Query: 393 NAAFALYGLADNEDNVADFIRVGGV 417
++ +A+ L D + + + GV
Sbjct: 227 DSCWAISYLTDGPNERIEMVVKKGV 251
Score = 47.8 bits (112), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 46/184 (25%), Positives = 77/184 (41%), Gaps = 7/184 (3%)
Query: 207 GGIPPLVELLEFTD-TKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSEDSAI 265
G IP V L TD + +Q +A AL +A E +V+ A+P I +L S + I
Sbjct: 76 GLIPKFVSFLGKTDCSPIQFESAWALTNIASGTSEQTKAVVDGGAIPAFISLLASPHAHI 135
Query: 266 HYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGL-----LSSCCSESQREAALLLGQFAA 320
+AV +GN+ + V+ GA+ P++ L LS+ R L
Sbjct: 136 SEQAVWALGNIAGDGSAFRDLVIKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSNLCR 195
Query: 321 TDSDCKVHIVQRGAVRPLIEMLQSPDVQLREMSAFALGRLAQDMHNQAGIAHNGGLVP-L 379
+ + L+ +L D ++ S +A+ L + + + G+VP L
Sbjct: 196 NKNPAPPLDAVEQILPTLVRLLHHNDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQL 255
Query: 380 LKLL 383
+KLL
Sbjct: 256 VKLL 259
Score = 35.4 bits (80), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 44/188 (23%), Positives = 79/188 (42%), Gaps = 22/188 (11%)
Query: 95 EVVNWIVEGGAVPALVKHLQAPPTSEADRNLKPFEHEVEKGSAFALGLLAVKPEHQ-QLI 153
E + +V+ G VP LVK L A E + + A+G + + Q Q +
Sbjct: 241 ERIEMVVKKGVVPQLVKLLGA------------TELPIVTPALRAIGNIVTGTDEQTQKV 288
Query: 154 VDNGALSHLVNLLKRHMDSNCSRAVNSVIRRAADAITNLAHENSSIKTRVRMEGGIPPLV 213
+D GAL+ +LL + ++ + A ++N+ +V G +P LV
Sbjct: 289 IDAGALAVFPSLL--------TNPKTNIQKEATWTMSNITAGRQDQIQQVVNHGLVPFLV 340
Query: 214 ELLEFTDTKVQRAAAGALRTLAFKND-ENKNQIVECNALPTLILMLRSEDSAIHYEAVGV 272
+L D K Q+ AA A+ E +V C + L+ +L ++D+ I +
Sbjct: 341 GVLSKADFKTQKEAAWAITNYTSGGTVEQIVYLVHCGIIEPLMNLLSAKDTKIIQVILDA 400
Query: 273 IGNLVHSS 280
I N+ ++
Sbjct: 401 ISNIFQAA 408
Score = 29.3 bits (64), Expect = 8.1, Method: Compositional matrix adjust.
Identities = 41/184 (22%), Positives = 81/184 (44%), Gaps = 32/184 (17%)
Query: 100 IVEGGAVPALVKHLQAPPTSEADRNLKPFEHEVEKGSAFALG-LLAVKPEHQQLIVDNGA 158
+++ GA+ L P T+ ++K + + + + A + + Q +V++G
Sbjct: 288 VIDAGALAVFPSLLTNPKTN------------IQKEATWTMSNITAGRQDQIQQVVNHGL 335
Query: 159 LSHLVNLLKRHMDSNCSRAVNSVIRRAADAITNLAHENSSIKTRVRME--GGIPPLVELL 216
+ LV +L S+A + AA AITN +++ V + G I PL+ LL
Sbjct: 336 VPFLVGVL--------SKADFKTQKEAAWAITNYT-SGGTVEQIVYLVHCGIIEPLMNLL 386
Query: 217 EFTDTKVQRAAAGALRTLAFKNDENKNQ-------IVECNALPTLILMLRSEDSAIHYEA 269
DTK+ + A+ + F+ E + I EC L + + R E+ +++ +
Sbjct: 387 SAKDTKIIQVILDAISNI-FQAAEKLGETEKLSIMIEECGGLDKIEALQRHENESVYKAS 445
Query: 270 VGVI 273
+ +I
Sbjct: 446 LNLI 449
>pdb|1EJL|I Chain I, Mouse Importin Alpha-Sv40 Large T Antigen Nls Peptide
Complex
pdb|1EJY|I Chain I, Mouse Importin Alpha-Nucleoplasmin Nls Peptide Complex
pdb|1IQ1|C Chain C, Crystal Structure Of The Importin-Alpha(44-54)-Importin-
Alpha(70-529) Complex
pdb|1PJM|B Chain B, Mouse Importin Alpha-Bipartite Nls From Human
Retinoblastoma Protein Complex
pdb|1PJN|B Chain B, Mouse Importin Alpha-Bipartite Nls N1n2 From Xenopus
Laevis Phosphoprotein Complex
pdb|3KND|A Chain A, Tpx2:importin-Alpha Complex
pdb|3Q5U|A Chain A, A Minimal Nls From Human Scramblase 4 Complexed With
Importin Alpha
Length = 460
Score = 78.2 bits (191), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 72/294 (24%), Positives = 134/294 (45%), Gaps = 24/294 (8%)
Query: 100 IVEGGAVPALVKHLQAPPTSEADRNLKPFEHEVEKGSAFALGLLAVKPEHQQLIVDNGAL 159
+V+GGA+PA + L +P +++ + + GSAF + L++ +GA+
Sbjct: 89 VVDGGAIPAFISLLASPHAHISEQAVWALGNIAGDGSAF-----------RDLVIKHGAI 137
Query: 160 SHLVNLLKRHMDSNCSRAVNSVIRRAADAITNLAHENSSIKTRVRMEGGIPPLVELLEFT 219
L+ LL + S +R ++NL + +E +P LV LL
Sbjct: 138 DPLLALLAV---PDLSTLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTLVRLLHHN 194
Query: 220 DTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSEDSAIHYEAVGVIGNLVHS 279
D +V + A+ L +E +V+ +P L+ +L + + I A+ IGN+V
Sbjct: 195 DPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGATELPIVTPALRAIGNIVTG 254
Query: 280 SPNIKKEVLAAGALQPVIGLLSSCCSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLI 339
+ ++V+ AGAL LL++ + Q+EA + A D +V G V L+
Sbjct: 255 TDEQTQKVIDAGALAVFPSLLTNPKTNIQKEATWTMSNITAGRQDQIQQVVNHGLVPFLV 314
Query: 340 EMLQSPDVQLREMSAFAL------GRLAQDMHNQAGIAHNGGLVPLLKLLDSKN 387
+L D + ++ +A+A+ G + Q ++ + H G + PL+ LL +K+
Sbjct: 315 GVLSKADFKTQKEAAWAITNYTSGGTVEQIVY----LVHCGIIEPLMNLLSAKD 364
Score = 50.1 bits (118), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 45/205 (21%), Positives = 84/205 (40%), Gaps = 17/205 (8%)
Query: 225 RAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSED-SAIHYEAVGVIGNLVHSSPNI 283
+A A + L+ + + I+ +P + L D S I +E+ + N+ +
Sbjct: 26 QATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGKTDCSPIQFESAWALTNIASGTSEQ 85
Query: 284 KKEVLAAGALQPVIGLLSSCCSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQ 343
K V+ GA+ I LL+S + +A LG A S + +++ GA+ PL+ +L
Sbjct: 86 TKAVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGDGSAFRDLVIKHGAIDPLLALLA 145
Query: 344 SPDVQLREMSAFALGRLAQDMHNQAGIAHNGGLVP-----------LLKLLDSKNGSLQH 392
PD +S A G L + + N P L++LL + +
Sbjct: 146 VPD-----LSTLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTLVRLLHHNDPEVLA 200
Query: 393 NAAFALYGLADNEDNVADFIRVGGV 417
++ +A+ L D + + + GV
Sbjct: 201 DSCWAISYLTDGPNERIEMVVKKGV 225
Score = 47.8 bits (112), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 30/96 (31%), Positives = 48/96 (50%), Gaps = 1/96 (1%)
Query: 207 GGIPPLVELLEFTD-TKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSEDSAI 265
G IP V L TD + +Q +A AL +A E +V+ A+P I +L S + I
Sbjct: 50 GLIPKFVSFLGKTDCSPIQFESAWALTNIASGTSEQTKAVVDGGAIPAFISLLASPHAHI 109
Query: 266 HYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLS 301
+AV +GN+ + V+ GA+ P++ LL+
Sbjct: 110 SEQAVWALGNIAGDGSAFRDLVIKHGAIDPLLALLA 145
Score = 35.8 bits (81), Expect = 0.094, Method: Compositional matrix adjust.
Identities = 46/191 (24%), Positives = 80/191 (41%), Gaps = 28/191 (14%)
Query: 95 EVVNWIVEGGAVPALVKHLQA---PPTSEADRNLKPFEHEVEKGSAFALGLLAVKPEHQ- 150
E + +V+ G VP LVK L A P + A R A+G + + Q
Sbjct: 215 ERIEMVVKKGVVPQLVKLLGATELPIVTPALR---------------AIGNIVTGTDEQT 259
Query: 151 QLIVDNGALSHLVNLLKRHMDSNCSRAVNSVIRRAADAITNLAHENSSIKTRVRMEGGIP 210
Q ++D GAL+ +LL + ++ + A ++N+ +V G +P
Sbjct: 260 QKVIDAGALAVFPSLL--------TNPKTNIQKEATWTMSNITAGRQDQIQQVVNHGLVP 311
Query: 211 PLVELLEFTDTKVQRAAAGALRTLAFKND-ENKNQIVECNALPTLILMLRSEDSAIHYEA 269
LV +L D K Q+ AA A+ E +V C + L+ +L ++D+ I
Sbjct: 312 FLVGVLSKADFKTQKEAAWAITNYTSGGTVEQIVYLVHCGIIEPLMNLLSAKDTKIIQVI 371
Query: 270 VGVIGNLVHSS 280
+ I N+ ++
Sbjct: 372 LDAISNIFQAA 382
>pdb|2C1M|A Chain A, Nup50:importin-Alpha Complex
Length = 424
Score = 77.8 bits (190), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 72/294 (24%), Positives = 134/294 (45%), Gaps = 24/294 (8%)
Query: 100 IVEGGAVPALVKHLQAPPTSEADRNLKPFEHEVEKGSAFALGLLAVKPEHQQLIVDNGAL 159
+V+GGA+PA + L +P +++ + + GSAF + L++ +GA+
Sbjct: 84 VVDGGAIPAFISLLASPHAHISEQAVWALGNIAGDGSAF-----------RDLVIKHGAI 132
Query: 160 SHLVNLLKRHMDSNCSRAVNSVIRRAADAITNLAHENSSIKTRVRMEGGIPPLVELLEFT 219
L+ LL + S +R ++NL + +E +P LV LL
Sbjct: 133 DPLLALLAV---PDLSTLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTLVRLLHHN 189
Query: 220 DTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSEDSAIHYEAVGVIGNLVHS 279
D +V + A+ L +E +V+ +P L+ +L + + I A+ IGN+V
Sbjct: 190 DPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGATELPIVTPALRAIGNIVTG 249
Query: 280 SPNIKKEVLAAGALQPVIGLLSSCCSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLI 339
+ ++V+ AGAL LL++ + Q+EA + A D +V G V L+
Sbjct: 250 TDEQTQKVIDAGALAVFPSLLTNPKTNIQKEATWTMSNITAGRQDQIQQVVNHGLVPFLV 309
Query: 340 EMLQSPDVQLREMSAFAL------GRLAQDMHNQAGIAHNGGLVPLLKLLDSKN 387
+L D + ++ +A+A+ G + Q ++ + H G + PL+ LL +K+
Sbjct: 310 GVLSKADFKTQKEAAWAITNYTSGGTVEQIVY----LVHCGIIEPLMNLLSAKD 359
Score = 50.1 bits (118), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 45/205 (21%), Positives = 84/205 (40%), Gaps = 17/205 (8%)
Query: 225 RAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSED-SAIHYEAVGVIGNLVHSSPNI 283
+A A + L+ + + I+ +P + L D S I +E+ + N+ +
Sbjct: 21 QATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGKTDCSPIQFESAWALTNIASGTSEQ 80
Query: 284 KKEVLAAGALQPVIGLLSSCCSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQ 343
K V+ GA+ I LL+S + +A LG A S + +++ GA+ PL+ +L
Sbjct: 81 TKAVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGDGSAFRDLVIKHGAIDPLLALLA 140
Query: 344 SPDVQLREMSAFALGRLAQDMHNQAGIAHNGGLVP-----------LLKLLDSKNGSLQH 392
PD +S A G L + + N P L++LL + +
Sbjct: 141 VPD-----LSTLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTLVRLLHHNDPEVLA 195
Query: 393 NAAFALYGLADNEDNVADFIRVGGV 417
++ +A+ L D + + + GV
Sbjct: 196 DSCWAISYLTDGPNERIEMVVKKGV 220
Score = 47.4 bits (111), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 30/96 (31%), Positives = 48/96 (50%), Gaps = 1/96 (1%)
Query: 207 GGIPPLVELLEFTD-TKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSEDSAI 265
G IP V L TD + +Q +A AL +A E +V+ A+P I +L S + I
Sbjct: 45 GLIPKFVSFLGKTDCSPIQFESAWALTNIASGTSEQTKAVVDGGAIPAFISLLASPHAHI 104
Query: 266 HYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLS 301
+AV +GN+ + V+ GA+ P++ LL+
Sbjct: 105 SEQAVWALGNIAGDGSAFRDLVIKHGAIDPLLALLA 140
Score = 35.4 bits (80), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 46/191 (24%), Positives = 80/191 (41%), Gaps = 28/191 (14%)
Query: 95 EVVNWIVEGGAVPALVKHLQA---PPTSEADRNLKPFEHEVEKGSAFALGLLAVKPEHQ- 150
E + +V+ G VP LVK L A P + A R A+G + + Q
Sbjct: 210 ERIEMVVKKGVVPQLVKLLGATELPIVTPALR---------------AIGNIVTGTDEQT 254
Query: 151 QLIVDNGALSHLVNLLKRHMDSNCSRAVNSVIRRAADAITNLAHENSSIKTRVRMEGGIP 210
Q ++D GAL+ +LL + ++ + A ++N+ +V G +P
Sbjct: 255 QKVIDAGALAVFPSLL--------TNPKTNIQKEATWTMSNITAGRQDQIQQVVNHGLVP 306
Query: 211 PLVELLEFTDTKVQRAAAGALRTLAFKND-ENKNQIVECNALPTLILMLRSEDSAIHYEA 269
LV +L D K Q+ AA A+ E +V C + L+ +L ++D+ I
Sbjct: 307 FLVGVLSKADFKTQKEAAWAITNYTSGGTVEQIVYLVHCGIIEPLMNLLSAKDTKIIQVI 366
Query: 270 VGVIGNLVHSS 280
+ I N+ ++
Sbjct: 367 LDAISNIFQAA 377
Score = 28.9 bits (63), Expect = 9.7, Method: Compositional matrix adjust.
Identities = 41/184 (22%), Positives = 81/184 (44%), Gaps = 32/184 (17%)
Query: 100 IVEGGAVPALVKHLQAPPTSEADRNLKPFEHEVEKGSAFALG-LLAVKPEHQQLIVDNGA 158
+++ GA+ L P T+ ++K + + + + A + + Q +V++G
Sbjct: 257 VIDAGALAVFPSLLTNPKTN------------IQKEATWTMSNITAGRQDQIQQVVNHGL 304
Query: 159 LSHLVNLLKRHMDSNCSRAVNSVIRRAADAITNLAHENSSIKTRVRME--GGIPPLVELL 216
+ LV +L S+A + AA AITN +++ V + G I PL+ LL
Sbjct: 305 VPFLVGVL--------SKADFKTQKEAAWAITNYT-SGGTVEQIVYLVHCGIIEPLMNLL 355
Query: 217 EFTDTKVQRAAAGALRTLAFKNDENKNQ-------IVECNALPTLILMLRSEDSAIHYEA 269
DTK+ + A+ + F+ E + I EC L + + R E+ +++ +
Sbjct: 356 SAKDTKIIQVILDAISNI-FQAAEKLGETEKLSIMIEECGGLDKIEALQRHENESVYKAS 414
Query: 270 VGVI 273
+ +I
Sbjct: 415 LNLI 418
>pdb|1Y2A|C Chain C, Structure Of Mammalian Importin Bound To The Non-Classical
Plscr1-Nls
Length = 428
Score = 77.8 bits (190), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 72/294 (24%), Positives = 134/294 (45%), Gaps = 24/294 (8%)
Query: 100 IVEGGAVPALVKHLQAPPTSEADRNLKPFEHEVEKGSAFALGLLAVKPEHQQLIVDNGAL 159
+V+GGA+PA + L +P +++ + + GSAF + L++ +GA+
Sbjct: 89 VVDGGAIPAFISLLASPHAHISEQAVWALGNIAGDGSAF-----------RDLVIKHGAI 137
Query: 160 SHLVNLLKRHMDSNCSRAVNSVIRRAADAITNLAHENSSIKTRVRMEGGIPPLVELLEFT 219
L+ LL + S +R ++NL + +E +P LV LL
Sbjct: 138 DPLLALLAV---PDLSTLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTLVRLLHHN 194
Query: 220 DTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSEDSAIHYEAVGVIGNLVHS 279
D +V + A+ L +E +V+ +P L+ +L + + I A+ IGN+V
Sbjct: 195 DPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGATELPIVTPALRAIGNIVTG 254
Query: 280 SPNIKKEVLAAGALQPVIGLLSSCCSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLI 339
+ ++V+ AGAL LL++ + Q+EA + A D +V G V L+
Sbjct: 255 TDEQTQKVIDAGALAVFPSLLTNPKTNIQKEATWTMSNITAGRQDQIQQVVNHGLVPFLV 314
Query: 340 EMLQSPDVQLREMSAFAL------GRLAQDMHNQAGIAHNGGLVPLLKLLDSKN 387
+L D + ++ +A+A+ G + Q ++ + H G + PL+ LL +K+
Sbjct: 315 GVLSKADFKTQKEAAWAITNYTSGGTVEQIVY----LVHCGIIEPLMNLLSAKD 364
Score = 50.1 bits (118), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 45/205 (21%), Positives = 84/205 (40%), Gaps = 17/205 (8%)
Query: 225 RAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSED-SAIHYEAVGVIGNLVHSSPNI 283
+A A + L+ + + I+ +P + L D S I +E+ + N+ +
Sbjct: 26 QATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGKTDCSPIQFESAWALTNIASGTSEQ 85
Query: 284 KKEVLAAGALQPVIGLLSSCCSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQ 343
K V+ GA+ I LL+S + +A LG A S + +++ GA+ PL+ +L
Sbjct: 86 TKAVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGDGSAFRDLVIKHGAIDPLLALLA 145
Query: 344 SPDVQLREMSAFALGRLAQDMHNQAGIAHNGGLVP-----------LLKLLDSKNGSLQH 392
PD +S A G L + + N P L++LL + +
Sbjct: 146 VPD-----LSTLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTLVRLLHHNDPEVLA 200
Query: 393 NAAFALYGLADNEDNVADFIRVGGV 417
++ +A+ L D + + + GV
Sbjct: 201 DSCWAISYLTDGPNERIEMVVKKGV 225
Score = 47.4 bits (111), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 30/96 (31%), Positives = 48/96 (50%), Gaps = 1/96 (1%)
Query: 207 GGIPPLVELLEFTD-TKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSEDSAI 265
G IP V L TD + +Q +A AL +A E +V+ A+P I +L S + I
Sbjct: 50 GLIPKFVSFLGKTDCSPIQFESAWALTNIASGTSEQTKAVVDGGAIPAFISLLASPHAHI 109
Query: 266 HYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLS 301
+AV +GN+ + V+ GA+ P++ LL+
Sbjct: 110 SEQAVWALGNIAGDGSAFRDLVIKHGAIDPLLALLA 145
Score = 35.4 bits (80), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 46/191 (24%), Positives = 80/191 (41%), Gaps = 28/191 (14%)
Query: 95 EVVNWIVEGGAVPALVKHLQA---PPTSEADRNLKPFEHEVEKGSAFALGLLAVKPEHQ- 150
E + +V+ G VP LVK L A P + A R A+G + + Q
Sbjct: 215 ERIEMVVKKGVVPQLVKLLGATELPIVTPALR---------------AIGNIVTGTDEQT 259
Query: 151 QLIVDNGALSHLVNLLKRHMDSNCSRAVNSVIRRAADAITNLAHENSSIKTRVRMEGGIP 210
Q ++D GAL+ +LL + ++ + A ++N+ +V G +P
Sbjct: 260 QKVIDAGALAVFPSLL--------TNPKTNIQKEATWTMSNITAGRQDQIQQVVNHGLVP 311
Query: 211 PLVELLEFTDTKVQRAAAGALRTLAFKND-ENKNQIVECNALPTLILMLRSEDSAIHYEA 269
LV +L D K Q+ AA A+ E +V C + L+ +L ++D+ I
Sbjct: 312 FLVGVLSKADFKTQKEAAWAITNYTSGGTVEQIVYLVHCGIIEPLMNLLSAKDTKIIQVI 371
Query: 270 VGVIGNLVHSS 280
+ I N+ ++
Sbjct: 372 LDAISNIFQAA 382
Score = 28.9 bits (63), Expect = 9.1, Method: Compositional matrix adjust.
Identities = 41/184 (22%), Positives = 81/184 (44%), Gaps = 32/184 (17%)
Query: 100 IVEGGAVPALVKHLQAPPTSEADRNLKPFEHEVEKGSAFALG-LLAVKPEHQQLIVDNGA 158
+++ GA+ L P T+ ++K + + + + A + + Q +V++G
Sbjct: 262 VIDAGALAVFPSLLTNPKTN------------IQKEATWTMSNITAGRQDQIQQVVNHGL 309
Query: 159 LSHLVNLLKRHMDSNCSRAVNSVIRRAADAITNLAHENSSIKTRVRME--GGIPPLVELL 216
+ LV +L S+A + AA AITN +++ V + G I PL+ LL
Sbjct: 310 VPFLVGVL--------SKADFKTQKEAAWAITNYT-SGGTVEQIVYLVHCGIIEPLMNLL 360
Query: 217 EFTDTKVQRAAAGALRTLAFKNDENKNQ-------IVECNALPTLILMLRSEDSAIHYEA 269
DTK+ + A+ + F+ E + I EC L + + R E+ +++ +
Sbjct: 361 SAKDTKIIQVILDAISNI-FQAAEKLGETEKLSIMIEECGGLDKIEALQRHENESVYKAS 419
Query: 270 VGVI 273
+ +I
Sbjct: 420 LNLI 423
>pdb|1Q1S|C Chain C, Mouse Importin Alpha- Phosphorylated Sv40 Cn Peptide
Complex
pdb|1Q1T|C Chain C, Mouse Importin Alpha: Non-Phosphorylated Sv40 Cn Peptide
Complex
Length = 466
Score = 77.8 bits (190), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 72/294 (24%), Positives = 134/294 (45%), Gaps = 24/294 (8%)
Query: 100 IVEGGAVPALVKHLQAPPTSEADRNLKPFEHEVEKGSAFALGLLAVKPEHQQLIVDNGAL 159
+V+GGA+PA + L +P +++ + + GSAF + L++ +GA+
Sbjct: 95 VVDGGAIPAFISLLASPHAHISEQAVWALGNIAGDGSAF-----------RDLVIKHGAI 143
Query: 160 SHLVNLLKRHMDSNCSRAVNSVIRRAADAITNLAHENSSIKTRVRMEGGIPPLVELLEFT 219
L+ LL + S +R ++NL + +E +P LV LL
Sbjct: 144 DPLLALLAV---PDLSTLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTLVRLLHHN 200
Query: 220 DTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSEDSAIHYEAVGVIGNLVHS 279
D +V + A+ L +E +V+ +P L+ +L + + I A+ IGN+V
Sbjct: 201 DPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGATELPIVTPALRAIGNIVTG 260
Query: 280 SPNIKKEVLAAGALQPVIGLLSSCCSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLI 339
+ ++V+ AGAL LL++ + Q+EA + A D +V G V L+
Sbjct: 261 TDEQTQKVIDAGALAVFPSLLTNPKTNIQKEATWTMSNITAGRQDQIQQVVNHGLVPFLV 320
Query: 340 EMLQSPDVQLREMSAFAL------GRLAQDMHNQAGIAHNGGLVPLLKLLDSKN 387
+L D + ++ +A+A+ G + Q ++ + H G + PL+ LL +K+
Sbjct: 321 GVLSKADFKTQKEAAWAITNYTSGGTVEQIVY----LVHCGIIEPLMNLLSAKD 370
Score = 50.1 bits (118), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 45/205 (21%), Positives = 84/205 (40%), Gaps = 17/205 (8%)
Query: 225 RAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSED-SAIHYEAVGVIGNLVHSSPNI 283
+A A + L+ + + I+ +P + L D S I +E+ + N+ +
Sbjct: 32 QATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGKTDCSPIQFESAWALTNIASGTSEQ 91
Query: 284 KKEVLAAGALQPVIGLLSSCCSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQ 343
K V+ GA+ I LL+S + +A LG A S + +++ GA+ PL+ +L
Sbjct: 92 TKAVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGDGSAFRDLVIKHGAIDPLLALLA 151
Query: 344 SPDVQLREMSAFALGRLAQDMHNQAGIAHNGGLVP-----------LLKLLDSKNGSLQH 392
PD +S A G L + + N P L++LL + +
Sbjct: 152 VPD-----LSTLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTLVRLLHHNDPEVLA 206
Query: 393 NAAFALYGLADNEDNVADFIRVGGV 417
++ +A+ L D + + + GV
Sbjct: 207 DSCWAISYLTDGPNERIEMVVKKGV 231
Score = 47.8 bits (112), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 30/96 (31%), Positives = 48/96 (50%), Gaps = 1/96 (1%)
Query: 207 GGIPPLVELLEFTD-TKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSEDSAI 265
G IP V L TD + +Q +A AL +A E +V+ A+P I +L S + I
Sbjct: 56 GLIPKFVSFLGKTDCSPIQFESAWALTNIASGTSEQTKAVVDGGAIPAFISLLASPHAHI 115
Query: 266 HYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLS 301
+AV +GN+ + V+ GA+ P++ LL+
Sbjct: 116 SEQAVWALGNIAGDGSAFRDLVIKHGAIDPLLALLA 151
Score = 35.8 bits (81), Expect = 0.093, Method: Compositional matrix adjust.
Identities = 46/191 (24%), Positives = 80/191 (41%), Gaps = 28/191 (14%)
Query: 95 EVVNWIVEGGAVPALVKHLQA---PPTSEADRNLKPFEHEVEKGSAFALGLLAVKPEHQ- 150
E + +V+ G VP LVK L A P + A R A+G + + Q
Sbjct: 221 ERIEMVVKKGVVPQLVKLLGATELPIVTPALR---------------AIGNIVTGTDEQT 265
Query: 151 QLIVDNGALSHLVNLLKRHMDSNCSRAVNSVIRRAADAITNLAHENSSIKTRVRMEGGIP 210
Q ++D GAL+ +LL + ++ + A ++N+ +V G +P
Sbjct: 266 QKVIDAGALAVFPSLL--------TNPKTNIQKEATWTMSNITAGRQDQIQQVVNHGLVP 317
Query: 211 PLVELLEFTDTKVQRAAAGALRTLAFKND-ENKNQIVECNALPTLILMLRSEDSAIHYEA 269
LV +L D K Q+ AA A+ E +V C + L+ +L ++D+ I
Sbjct: 318 FLVGVLSKADFKTQKEAAWAITNYTSGGTVEQIVYLVHCGIIEPLMNLLSAKDTKIIQVI 377
Query: 270 VGVIGNLVHSS 280
+ I N+ ++
Sbjct: 378 LDAISNIFQAA 388
>pdb|4BA3|A Chain A, Mimp_alphadibb_a89nls
Length = 496
Score = 77.8 bits (190), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 72/294 (24%), Positives = 134/294 (45%), Gaps = 24/294 (8%)
Query: 100 IVEGGAVPALVKHLQAPPTSEADRNLKPFEHEVEKGSAFALGLLAVKPEHQQLIVDNGAL 159
+V+GGA+PA + L +P +++ + + GSAF + L++ +GA+
Sbjct: 125 VVDGGAIPAFISLLASPHAHISEQAVWALGNIAGDGSAF-----------RDLVIKHGAI 173
Query: 160 SHLVNLLKRHMDSNCSRAVNSVIRRAADAITNLAHENSSIKTRVRMEGGIPPLVELLEFT 219
L+ LL + S +R ++NL + +E +P LV LL
Sbjct: 174 DPLLALLAV---PDLSTLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTLVRLLHHN 230
Query: 220 DTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSEDSAIHYEAVGVIGNLVHS 279
D +V + A+ L +E +V+ +P L+ +L + + I A+ IGN+V
Sbjct: 231 DPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGATELPIVTPALRAIGNIVTG 290
Query: 280 SPNIKKEVLAAGALQPVIGLLSSCCSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLI 339
+ ++V+ AGAL LL++ + Q+EA + A D +V G V L+
Sbjct: 291 TDEQTQKVIDAGALAVFPSLLTNPKTNIQKEATWTMSNITAGRQDQIQQVVNHGLVPFLV 350
Query: 340 EMLQSPDVQLREMSAFAL------GRLAQDMHNQAGIAHNGGLVPLLKLLDSKN 387
+L D + ++ +A+A+ G + Q ++ + H G + PL+ LL +K+
Sbjct: 351 GVLSKADFKTQKEAAWAITNYTSGGTVEQIVY----LVHCGIIEPLMNLLSAKD 400
Score = 49.7 bits (117), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 45/205 (21%), Positives = 84/205 (40%), Gaps = 17/205 (8%)
Query: 225 RAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSED-SAIHYEAVGVIGNLVHSSPNI 283
+A A + L+ + + I+ +P + L D S I +E+ + N+ +
Sbjct: 62 QATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGKTDCSPIQFESAWALTNIASGTSEQ 121
Query: 284 KKEVLAAGALQPVIGLLSSCCSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQ 343
K V+ GA+ I LL+S + +A LG A S + +++ GA+ PL+ +L
Sbjct: 122 TKAVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGDGSAFRDLVIKHGAIDPLLALLA 181
Query: 344 SPDVQLREMSAFALGRLAQDMHNQAGIAHNGGLVP-----------LLKLLDSKNGSLQH 392
PD +S A G L + + N P L++LL + +
Sbjct: 182 VPD-----LSTLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTLVRLLHHNDPEVLA 236
Query: 393 NAAFALYGLADNEDNVADFIRVGGV 417
++ +A+ L D + + + GV
Sbjct: 237 DSCWAISYLTDGPNERIEMVVKKGV 261
Score = 47.8 bits (112), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 30/96 (31%), Positives = 48/96 (50%), Gaps = 1/96 (1%)
Query: 207 GGIPPLVELLEFTD-TKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSEDSAI 265
G IP V L TD + +Q +A AL +A E +V+ A+P I +L S + I
Sbjct: 86 GLIPKFVSFLGKTDCSPIQFESAWALTNIASGTSEQTKAVVDGGAIPAFISLLASPHAHI 145
Query: 266 HYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLS 301
+AV +GN+ + V+ GA+ P++ LL+
Sbjct: 146 SEQAVWALGNIAGDGSAFRDLVIKHGAIDPLLALLA 181
Score = 35.8 bits (81), Expect = 0.085, Method: Compositional matrix adjust.
Identities = 46/191 (24%), Positives = 80/191 (41%), Gaps = 28/191 (14%)
Query: 95 EVVNWIVEGGAVPALVKHLQA---PPTSEADRNLKPFEHEVEKGSAFALGLLAVKPEHQ- 150
E + +V+ G VP LVK L A P + A R A+G + + Q
Sbjct: 251 ERIEMVVKKGVVPQLVKLLGATELPIVTPALR---------------AIGNIVTGTDEQT 295
Query: 151 QLIVDNGALSHLVNLLKRHMDSNCSRAVNSVIRRAADAITNLAHENSSIKTRVRMEGGIP 210
Q ++D GAL+ +LL + ++ + A ++N+ +V G +P
Sbjct: 296 QKVIDAGALAVFPSLL--------TNPKTNIQKEATWTMSNITAGRQDQIQQVVNHGLVP 347
Query: 211 PLVELLEFTDTKVQRAAAGALRTLAFKND-ENKNQIVECNALPTLILMLRSEDSAIHYEA 269
LV +L D K Q+ AA A+ E +V C + L+ +L ++D+ I
Sbjct: 348 FLVGVLSKADFKTQKEAAWAITNYTSGGTVEQIVYLVHCGIIEPLMNLLSAKDTKIIQVI 407
Query: 270 VGVIGNLVHSS 280
+ I N+ ++
Sbjct: 408 LDAISNIFQAA 418
>pdb|2YNR|A Chain A, Mimp_alphadibb_b54nls
Length = 461
Score = 77.8 bits (190), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 72/294 (24%), Positives = 134/294 (45%), Gaps = 24/294 (8%)
Query: 100 IVEGGAVPALVKHLQAPPTSEADRNLKPFEHEVEKGSAFALGLLAVKPEHQQLIVDNGAL 159
+V+GGA+PA + L +P +++ + + GSAF + L++ +GA+
Sbjct: 123 VVDGGAIPAFISLLASPHAHISEQAVWALGNIAGDGSAF-----------RDLVIKHGAI 171
Query: 160 SHLVNLLKRHMDSNCSRAVNSVIRRAADAITNLAHENSSIKTRVRMEGGIPPLVELLEFT 219
L+ LL + S +R ++NL + +E +P LV LL
Sbjct: 172 DPLLALLAV---PDLSTLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTLVRLLHHN 228
Query: 220 DTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSEDSAIHYEAVGVIGNLVHS 279
D +V + A+ L +E +V+ +P L+ +L + + I A+ IGN+V
Sbjct: 229 DPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGATELPIVTPALRAIGNIVTG 288
Query: 280 SPNIKKEVLAAGALQPVIGLLSSCCSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLI 339
+ ++V+ AGAL LL++ + Q+EA + A D +V G V L+
Sbjct: 289 TDEQTQKVIDAGALAVFPSLLTNPKTNIQKEATWTMSNITAGRQDQIQQVVNHGLVPFLV 348
Query: 340 EMLQSPDVQLREMSAFAL------GRLAQDMHNQAGIAHNGGLVPLLKLLDSKN 387
+L D + ++ +A+A+ G + Q ++ + H G + PL+ LL +K+
Sbjct: 349 GVLSKADFKTQKEAAWAITNYTSGGTVEQIVY----LVHCGIIEPLMNLLSAKD 398
Score = 49.7 bits (117), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 45/205 (21%), Positives = 84/205 (40%), Gaps = 17/205 (8%)
Query: 225 RAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSED-SAIHYEAVGVIGNLVHSSPNI 283
+A A + L+ + + I+ +P + L D S I +E+ + N+ +
Sbjct: 60 QATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGKTDCSPIQFESAWALTNIASGTSEQ 119
Query: 284 KKEVLAAGALQPVIGLLSSCCSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQ 343
K V+ GA+ I LL+S + +A LG A S + +++ GA+ PL+ +L
Sbjct: 120 TKAVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGDGSAFRDLVIKHGAIDPLLALLA 179
Query: 344 SPDVQLREMSAFALGRLAQDMHNQAGIAHNGGLVP-----------LLKLLDSKNGSLQH 392
PD +S A G L + + N P L++LL + +
Sbjct: 180 VPD-----LSTLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTLVRLLHHNDPEVLA 234
Query: 393 NAAFALYGLADNEDNVADFIRVGGV 417
++ +A+ L D + + + GV
Sbjct: 235 DSCWAISYLTDGPNERIEMVVKKGV 259
Score = 47.8 bits (112), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 30/96 (31%), Positives = 48/96 (50%), Gaps = 1/96 (1%)
Query: 207 GGIPPLVELLEFTD-TKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSEDSAI 265
G IP V L TD + +Q +A AL +A E +V+ A+P I +L S + I
Sbjct: 84 GLIPKFVSFLGKTDCSPIQFESAWALTNIASGTSEQTKAVVDGGAIPAFISLLASPHAHI 143
Query: 266 HYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLS 301
+AV +GN+ + V+ GA+ P++ LL+
Sbjct: 144 SEQAVWALGNIAGDGSAFRDLVIKHGAIDPLLALLA 179
Score = 35.8 bits (81), Expect = 0.096, Method: Compositional matrix adjust.
Identities = 46/191 (24%), Positives = 80/191 (41%), Gaps = 28/191 (14%)
Query: 95 EVVNWIVEGGAVPALVKHLQA---PPTSEADRNLKPFEHEVEKGSAFALGLLAVKPEHQ- 150
E + +V+ G VP LVK L A P + A R A+G + + Q
Sbjct: 249 ERIEMVVKKGVVPQLVKLLGATELPIVTPALR---------------AIGNIVTGTDEQT 293
Query: 151 QLIVDNGALSHLVNLLKRHMDSNCSRAVNSVIRRAADAITNLAHENSSIKTRVRMEGGIP 210
Q ++D GAL+ +LL + ++ + A ++N+ +V G +P
Sbjct: 294 QKVIDAGALAVFPSLL--------TNPKTNIQKEATWTMSNITAGRQDQIQQVVNHGLVP 345
Query: 211 PLVELLEFTDTKVQRAAAGALRTLAFKND-ENKNQIVECNALPTLILMLRSEDSAIHYEA 269
LV +L D K Q+ AA A+ E +V C + L+ +L ++D+ I
Sbjct: 346 FLVGVLSKADFKTQKEAAWAITNYTSGGTVEQIVYLVHCGIIEPLMNLLSAKDTKIIQVI 405
Query: 270 VGVIGNLVHSS 280
+ I N+ ++
Sbjct: 406 LDAISNIFQAA 416
Score = 29.3 bits (64), Expect = 7.6, Method: Compositional matrix adjust.
Identities = 41/184 (22%), Positives = 81/184 (44%), Gaps = 32/184 (17%)
Query: 100 IVEGGAVPALVKHLQAPPTSEADRNLKPFEHEVEKGSAFALG-LLAVKPEHQQLIVDNGA 158
+++ GA+ L P T+ ++K + + + + A + + Q +V++G
Sbjct: 296 VIDAGALAVFPSLLTNPKTN------------IQKEATWTMSNITAGRQDQIQQVVNHGL 343
Query: 159 LSHLVNLLKRHMDSNCSRAVNSVIRRAADAITNLAHENSSIKTRVRME--GGIPPLVELL 216
+ LV +L S+A + AA AITN +++ V + G I PL+ LL
Sbjct: 344 VPFLVGVL--------SKADFKTQKEAAWAITNYT-SGGTVEQIVYLVHCGIIEPLMNLL 394
Query: 217 EFTDTKVQRAAAGALRTLAFKNDENKNQ-------IVECNALPTLILMLRSEDSAIHYEA 269
DTK+ + A+ + F+ E + I EC L + + R E+ +++ +
Sbjct: 395 SAKDTKIIQVILDAISNI-FQAAEKLGETEKLSIMIEECGGLDKIEALQRHENESVYKAS 453
Query: 270 VGVI 273
+ +I
Sbjct: 454 LNLI 457
>pdb|3UKW|B Chain B, Mouse Importin Alpha: Bimax1 Peptide Complex
pdb|3UKX|B Chain B, Mouse Importin Alpha: Bimax2 Peptide Complex
pdb|3UKY|B Chain B, Mouse Importin Alpha: Yeast Cbp80 Cnls Complex
pdb|3UKZ|B Chain B, Mouse Importin Alpha: Mouse Cbp80 Cnls Complex
pdb|3UL0|B Chain B, Mouse Importin Alpha: Mouse Cbp80y8d Cnls Complex
pdb|3UL1|B Chain B, Mouse Importin Alpha: Nucleoplasmin Cnls Peptide Complex
Length = 510
Score = 77.8 bits (190), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 72/294 (24%), Positives = 134/294 (45%), Gaps = 24/294 (8%)
Query: 100 IVEGGAVPALVKHLQAPPTSEADRNLKPFEHEVEKGSAFALGLLAVKPEHQQLIVDNGAL 159
+V+GGA+PA + L +P +++ + + GSAF + L++ +GA+
Sbjct: 139 VVDGGAIPAFISLLASPHAHISEQAVWALGNIAGDGSAF-----------RDLVIKHGAI 187
Query: 160 SHLVNLLKRHMDSNCSRAVNSVIRRAADAITNLAHENSSIKTRVRMEGGIPPLVELLEFT 219
L+ LL + S +R ++NL + +E +P LV LL
Sbjct: 188 DPLLALLAV---PDLSTLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTLVRLLHHN 244
Query: 220 DTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSEDSAIHYEAVGVIGNLVHS 279
D +V + A+ L +E +V+ +P L+ +L + + I A+ IGN+V
Sbjct: 245 DPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGATELPIVTPALRAIGNIVTG 304
Query: 280 SPNIKKEVLAAGALQPVIGLLSSCCSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLI 339
+ ++V+ AGAL LL++ + Q+EA + A D +V G V L+
Sbjct: 305 TDEQTQKVIDAGALAVFPSLLTNPKTNIQKEATWTMSNITAGRQDQIQQVVNHGLVPFLV 364
Query: 340 EMLQSPDVQLREMSAFAL------GRLAQDMHNQAGIAHNGGLVPLLKLLDSKN 387
+L D + ++ +A+A+ G + Q ++ + H G + PL+ LL +K+
Sbjct: 365 GVLSKADFKTQKEAAWAITNYTSGGTVEQIVY----LVHCGIIEPLMNLLSAKD 414
Score = 49.7 bits (117), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 45/205 (21%), Positives = 84/205 (40%), Gaps = 17/205 (8%)
Query: 225 RAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSED-SAIHYEAVGVIGNLVHSSPNI 283
+A A + L+ + + I+ +P + L D S I +E+ + N+ +
Sbjct: 76 QATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGKTDCSPIQFESAWALTNIASGTSEQ 135
Query: 284 KKEVLAAGALQPVIGLLSSCCSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQ 343
K V+ GA+ I LL+S + +A LG A S + +++ GA+ PL+ +L
Sbjct: 136 TKAVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGDGSAFRDLVIKHGAIDPLLALLA 195
Query: 344 SPDVQLREMSAFALGRLAQDMHNQAGIAHNGGLVP-----------LLKLLDSKNGSLQH 392
PD +S A G L + + N P L++LL + +
Sbjct: 196 VPD-----LSTLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTLVRLLHHNDPEVLA 250
Query: 393 NAAFALYGLADNEDNVADFIRVGGV 417
++ +A+ L D + + + GV
Sbjct: 251 DSCWAISYLTDGPNERIEMVVKKGV 275
Score = 47.8 bits (112), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 30/96 (31%), Positives = 48/96 (50%), Gaps = 1/96 (1%)
Query: 207 GGIPPLVELLEFTD-TKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSEDSAI 265
G IP V L TD + +Q +A AL +A E +V+ A+P I +L S + I
Sbjct: 100 GLIPKFVSFLGKTDCSPIQFESAWALTNIASGTSEQTKAVVDGGAIPAFISLLASPHAHI 159
Query: 266 HYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLS 301
+AV +GN+ + V+ GA+ P++ LL+
Sbjct: 160 SEQAVWALGNIAGDGSAFRDLVIKHGAIDPLLALLA 195
Score = 35.4 bits (80), Expect = 0.098, Method: Compositional matrix adjust.
Identities = 46/191 (24%), Positives = 80/191 (41%), Gaps = 28/191 (14%)
Query: 95 EVVNWIVEGGAVPALVKHLQA---PPTSEADRNLKPFEHEVEKGSAFALGLLAVKPEHQ- 150
E + +V+ G VP LVK L A P + A R A+G + + Q
Sbjct: 265 ERIEMVVKKGVVPQLVKLLGATELPIVTPALR---------------AIGNIVTGTDEQT 309
Query: 151 QLIVDNGALSHLVNLLKRHMDSNCSRAVNSVIRRAADAITNLAHENSSIKTRVRMEGGIP 210
Q ++D GAL+ +LL + ++ + A ++N+ +V G +P
Sbjct: 310 QKVIDAGALAVFPSLL--------TNPKTNIQKEATWTMSNITAGRQDQIQQVVNHGLVP 361
Query: 211 PLVELLEFTDTKVQRAAAGALRTLAFKND-ENKNQIVECNALPTLILMLRSEDSAIHYEA 269
LV +L D K Q+ AA A+ E +V C + L+ +L ++D+ I
Sbjct: 362 FLVGVLSKADFKTQKEAAWAITNYTSGGTVEQIVYLVHCGIIEPLMNLLSAKDTKIIQVI 421
Query: 270 VGVIGNLVHSS 280
+ I N+ ++
Sbjct: 422 LDAISNIFQAA 432
>pdb|3RZ9|A Chain A, Mouse Importin Alpha-Ku80 Nls Peptide Complex
pdb|3RZX|A Chain A, Mouse Importin Alpha-Ku70 Nls Peptide Complex
pdb|3OQS|A Chain A, Crystal Structure Of Importin-Alpha Bound To A Clic4 Nls
Peptide
pdb|3UVU|A Chain A, Structural Basis Of Nuclear Import Of Flap Endonuclease 1
(fen1)
Length = 510
Score = 77.8 bits (190), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 72/294 (24%), Positives = 134/294 (45%), Gaps = 24/294 (8%)
Query: 100 IVEGGAVPALVKHLQAPPTSEADRNLKPFEHEVEKGSAFALGLLAVKPEHQQLIVDNGAL 159
+V+GGA+PA + L +P +++ + + GSAF + L++ +GA+
Sbjct: 139 VVDGGAIPAFISLLASPHAHISEQAVWALGNIAGDGSAF-----------RDLVIKHGAI 187
Query: 160 SHLVNLLKRHMDSNCSRAVNSVIRRAADAITNLAHENSSIKTRVRMEGGIPPLVELLEFT 219
L+ LL + S +R ++NL + +E +P LV LL
Sbjct: 188 DPLLALLAV---PDLSTLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTLVRLLHHN 244
Query: 220 DTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSEDSAIHYEAVGVIGNLVHS 279
D +V + A+ L +E +V+ +P L+ +L + + I A+ IGN+V
Sbjct: 245 DPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGATELPIVTPALRAIGNIVTG 304
Query: 280 SPNIKKEVLAAGALQPVIGLLSSCCSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLI 339
+ ++V+ AGAL LL++ + Q+EA + A D +V G V L+
Sbjct: 305 TDEQTQKVIDAGALAVFPSLLTNPKTNIQKEATWTMSNITAGRQDQIQQVVNHGLVPFLV 364
Query: 340 EMLQSPDVQLREMSAFAL------GRLAQDMHNQAGIAHNGGLVPLLKLLDSKN 387
+L D + ++ +A+A+ G + Q ++ + H G + PL+ LL +K+
Sbjct: 365 GVLSKADFKTQKEAAWAITNYTSGGTVEQIVY----LVHCGIIEPLMNLLSAKD 414
Score = 49.7 bits (117), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 45/205 (21%), Positives = 84/205 (40%), Gaps = 17/205 (8%)
Query: 225 RAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSED-SAIHYEAVGVIGNLVHSSPNI 283
+A A + L+ + + I+ +P + L D S I +E+ + N+ +
Sbjct: 76 QATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGKTDCSPIQFESAWALTNIASGTSEQ 135
Query: 284 KKEVLAAGALQPVIGLLSSCCSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQ 343
K V+ GA+ I LL+S + +A LG A S + +++ GA+ PL+ +L
Sbjct: 136 TKAVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGDGSAFRDLVIKHGAIDPLLALLA 195
Query: 344 SPDVQLREMSAFALGRLAQDMHNQAGIAHNGGLVP-----------LLKLLDSKNGSLQH 392
PD +S A G L + + N P L++LL + +
Sbjct: 196 VPD-----LSTLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTLVRLLHHNDPEVLA 250
Query: 393 NAAFALYGLADNEDNVADFIRVGGV 417
++ +A+ L D + + + GV
Sbjct: 251 DSCWAISYLTDGPNERIEMVVKKGV 275
Score = 47.8 bits (112), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 30/96 (31%), Positives = 48/96 (50%), Gaps = 1/96 (1%)
Query: 207 GGIPPLVELLEFTD-TKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSEDSAI 265
G IP V L TD + +Q +A AL +A E +V+ A+P I +L S + I
Sbjct: 100 GLIPKFVSFLGKTDCSPIQFESAWALTNIASGTSEQTKAVVDGGAIPAFISLLASPHAHI 159
Query: 266 HYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLS 301
+AV +GN+ + V+ GA+ P++ LL+
Sbjct: 160 SEQAVWALGNIAGDGSAFRDLVIKHGAIDPLLALLA 195
Score = 35.8 bits (81), Expect = 0.087, Method: Compositional matrix adjust.
Identities = 46/191 (24%), Positives = 80/191 (41%), Gaps = 28/191 (14%)
Query: 95 EVVNWIVEGGAVPALVKHLQA---PPTSEADRNLKPFEHEVEKGSAFALGLLAVKPEHQ- 150
E + +V+ G VP LVK L A P + A R A+G + + Q
Sbjct: 265 ERIEMVVKKGVVPQLVKLLGATELPIVTPALR---------------AIGNIVTGTDEQT 309
Query: 151 QLIVDNGALSHLVNLLKRHMDSNCSRAVNSVIRRAADAITNLAHENSSIKTRVRMEGGIP 210
Q ++D GAL+ +LL + ++ + A ++N+ +V G +P
Sbjct: 310 QKVIDAGALAVFPSLL--------TNPKTNIQKEATWTMSNITAGRQDQIQQVVNHGLVP 361
Query: 211 PLVELLEFTDTKVQRAAAGALRTLAFKND-ENKNQIVECNALPTLILMLRSEDSAIHYEA 269
LV +L D K Q+ AA A+ E +V C + L+ +L ++D+ I
Sbjct: 362 FLVGVLSKADFKTQKEAAWAITNYTSGGTVEQIVYLVHCGIIEPLMNLLSAKDTKIIQVI 421
Query: 270 VGVIGNLVHSS 280
+ I N+ ++
Sbjct: 422 LDAISNIFQAA 432
>pdb|3TPO|A Chain A, Crystal Structure Of D192aE396A MUTANT OF MOUSE IMPORTIN
ALPHA2
Length = 529
Score = 77.8 bits (190), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 72/294 (24%), Positives = 134/294 (45%), Gaps = 24/294 (8%)
Query: 100 IVEGGAVPALVKHLQAPPTSEADRNLKPFEHEVEKGSAFALGLLAVKPEHQQLIVDNGAL 159
+V+GGA+PA + L +P +++ + + GSAF + L++ +GA+
Sbjct: 158 VVDGGAIPAFISLLASPHAHISEQAVWALGNIAGAGSAF-----------RDLVIKHGAI 206
Query: 160 SHLVNLLKRHMDSNCSRAVNSVIRRAADAITNLAHENSSIKTRVRMEGGIPPLVELLEFT 219
L+ LL + S +R ++NL + +E +P LV LL
Sbjct: 207 DPLLALLAV---PDLSTLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTLVRLLHHN 263
Query: 220 DTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSEDSAIHYEAVGVIGNLVHS 279
D +V + A+ L +E +V+ +P L+ +L + + I A+ IGN+V
Sbjct: 264 DPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGATELPIVTPALRAIGNIVTG 323
Query: 280 SPNIKKEVLAAGALQPVIGLLSSCCSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLI 339
+ ++V+ AGAL LL++ + Q+EA + A D +V G V L+
Sbjct: 324 TDEQTQKVIDAGALAVFPSLLTNPKTNIQKEATWTMSNITAGRQDQIQQVVNHGLVPFLV 383
Query: 340 EMLQSPDVQLREMSAFAL------GRLAQDMHNQAGIAHNGGLVPLLKLLDSKN 387
+L D + ++ +A+A+ G + Q ++ + H G + PL+ LL +K+
Sbjct: 384 GVLSKADFKTQKAAAWAITNYTSGGTVEQIVY----LVHCGIIEPLMNLLSAKD 433
Score = 51.2 bits (121), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 45/205 (21%), Positives = 84/205 (40%), Gaps = 17/205 (8%)
Query: 225 RAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSED-SAIHYEAVGVIGNLVHSSPNI 283
+A A + L+ + + I+ +P + L D S I +E+ + N+ +
Sbjct: 95 QATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGKTDCSPIQFESAWALTNIASGTSEQ 154
Query: 284 KKEVLAAGALQPVIGLLSSCCSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQ 343
K V+ GA+ I LL+S + +A LG A S + +++ GA+ PL+ +L
Sbjct: 155 TKAVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGAGSAFRDLVIKHGAIDPLLALLA 214
Query: 344 SPDVQLREMSAFALGRLAQDMHNQAGIAHNGGLVP-----------LLKLLDSKNGSLQH 392
PD +S A G L + + N P L++LL + +
Sbjct: 215 VPD-----LSTLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTLVRLLHHNDPEVLA 269
Query: 393 NAAFALYGLADNEDNVADFIRVGGV 417
++ +A+ L D + + + GV
Sbjct: 270 DSCWAISYLTDGPNERIEMVVKKGV 294
Score = 48.5 bits (114), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 46/184 (25%), Positives = 78/184 (42%), Gaps = 7/184 (3%)
Query: 207 GGIPPLVELLEFTD-TKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSEDSAI 265
G IP V L TD + +Q +A AL +A E +V+ A+P I +L S + I
Sbjct: 119 GLIPKFVSFLGKTDCSPIQFESAWALTNIASGTSEQTKAVVDGGAIPAFISLLASPHAHI 178
Query: 266 HYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGL-----LSSCCSESQREAALLLGQFAA 320
+AV +GN+ + + V+ GA+ P++ L LS+ R L
Sbjct: 179 SEQAVWALGNIAGAGSAFRDLVIKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSNLCR 238
Query: 321 TDSDCKVHIVQRGAVRPLIEMLQSPDVQLREMSAFALGRLAQDMHNQAGIAHNGGLVP-L 379
+ + L+ +L D ++ S +A+ L + + + G+VP L
Sbjct: 239 NKNPAPPLDAVEQILPTLVRLLHHNDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQL 298
Query: 380 LKLL 383
+KLL
Sbjct: 299 VKLL 302
Score = 37.7 bits (86), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 47/191 (24%), Positives = 81/191 (42%), Gaps = 28/191 (14%)
Query: 95 EVVNWIVEGGAVPALVKHLQA---PPTSEADRNLKPFEHEVEKGSAFALGLLAVKPEHQ- 150
E + +V+ G VP LVK L A P + A R A+G + + Q
Sbjct: 284 ERIEMVVKKGVVPQLVKLLGATELPIVTPALR---------------AIGNIVTGTDEQT 328
Query: 151 QLIVDNGALSHLVNLLKRHMDSNCSRAVNSVIRRAADAITNLAHENSSIKTRVRMEGGIP 210
Q ++D GAL+ +LL + ++ + A ++N+ +V G +P
Sbjct: 329 QKVIDAGALAVFPSLL--------TNPKTNIQKEATWTMSNITAGRQDQIQQVVNHGLVP 380
Query: 211 PLVELLEFTDTKVQRAAAGALRTLAFKND-ENKNQIVECNALPTLILMLRSEDSAIHYEA 269
LV +L D K Q+AAA A+ E +V C + L+ +L ++D+ I
Sbjct: 381 FLVGVLSKADFKTQKAAAWAITNYTSGGTVEQIVYLVHCGIIEPLMNLLSAKDTKIIQVI 440
Query: 270 VGVIGNLVHSS 280
+ I N+ ++
Sbjct: 441 LDAISNIFQAA 451
>pdb|4HTV|A Chain A, Mouse Importin Alpha: Bfdv Cap Nls Peptide Complex
Length = 509
Score = 77.8 bits (190), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 72/294 (24%), Positives = 134/294 (45%), Gaps = 24/294 (8%)
Query: 100 IVEGGAVPALVKHLQAPPTSEADRNLKPFEHEVEKGSAFALGLLAVKPEHQQLIVDNGAL 159
+V+GGA+PA + L +P +++ + + GSAF + L++ +GA+
Sbjct: 139 VVDGGAIPAFISLLASPHAHISEQAVWALGNIAGDGSAF-----------RDLVIKHGAI 187
Query: 160 SHLVNLLKRHMDSNCSRAVNSVIRRAADAITNLAHENSSIKTRVRMEGGIPPLVELLEFT 219
L+ LL + S +R ++NL + +E +P LV LL
Sbjct: 188 DPLLALLAV---PDLSTLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTLVRLLHHN 244
Query: 220 DTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSEDSAIHYEAVGVIGNLVHS 279
D +V + A+ L +E +V+ +P L+ +L + + I A+ IGN+V
Sbjct: 245 DPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGATELPIVTPALRAIGNIVTG 304
Query: 280 SPNIKKEVLAAGALQPVIGLLSSCCSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLI 339
+ ++V+ AGAL LL++ + Q+EA + A D +V G V L+
Sbjct: 305 TDEQTQKVIDAGALAVFPSLLTNPKTNIQKEATWTMSNITAGRQDQIQQVVNHGLVPFLV 364
Query: 340 EMLQSPDVQLREMSAFAL------GRLAQDMHNQAGIAHNGGLVPLLKLLDSKN 387
+L D + ++ +A+A+ G + Q ++ + H G + PL+ LL +K+
Sbjct: 365 GVLSKADFKTQKEAAWAITNYTSGGTVEQIVY----LVHCGIIEPLMNLLSAKD 414
Score = 49.7 bits (117), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 45/205 (21%), Positives = 84/205 (40%), Gaps = 17/205 (8%)
Query: 225 RAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSED-SAIHYEAVGVIGNLVHSSPNI 283
+A A + L+ + + I+ +P + L D S I +E+ + N+ +
Sbjct: 76 QATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGKTDCSPIQFESAWALTNIASGTSEQ 135
Query: 284 KKEVLAAGALQPVIGLLSSCCSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQ 343
K V+ GA+ I LL+S + +A LG A S + +++ GA+ PL+ +L
Sbjct: 136 TKAVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGDGSAFRDLVIKHGAIDPLLALLA 195
Query: 344 SPDVQLREMSAFALGRLAQDMHNQAGIAHNGGLVP-----------LLKLLDSKNGSLQH 392
PD +S A G L + + N P L++LL + +
Sbjct: 196 VPD-----LSTLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTLVRLLHHNDPEVLA 250
Query: 393 NAAFALYGLADNEDNVADFIRVGGV 417
++ +A+ L D + + + GV
Sbjct: 251 DSCWAISYLTDGPNERIEMVVKKGV 275
Score = 47.8 bits (112), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 30/96 (31%), Positives = 48/96 (50%), Gaps = 1/96 (1%)
Query: 207 GGIPPLVELLEFTD-TKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSEDSAI 265
G IP V L TD + +Q +A AL +A E +V+ A+P I +L S + I
Sbjct: 100 GLIPKFVSFLGKTDCSPIQFESAWALTNIASGTSEQTKAVVDGGAIPAFISLLASPHAHI 159
Query: 266 HYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLS 301
+AV +GN+ + V+ GA+ P++ LL+
Sbjct: 160 SEQAVWALGNIAGDGSAFRDLVIKHGAIDPLLALLA 195
Score = 35.4 bits (80), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 46/191 (24%), Positives = 80/191 (41%), Gaps = 28/191 (14%)
Query: 95 EVVNWIVEGGAVPALVKHLQA---PPTSEADRNLKPFEHEVEKGSAFALGLLAVKPEHQ- 150
E + +V+ G VP LVK L A P + A R A+G + + Q
Sbjct: 265 ERIEMVVKKGVVPQLVKLLGATELPIVTPALR---------------AIGNIVTGTDEQT 309
Query: 151 QLIVDNGALSHLVNLLKRHMDSNCSRAVNSVIRRAADAITNLAHENSSIKTRVRMEGGIP 210
Q ++D GAL+ +LL + ++ + A ++N+ +V G +P
Sbjct: 310 QKVIDAGALAVFPSLL--------TNPKTNIQKEATWTMSNITAGRQDQIQQVVNHGLVP 361
Query: 211 PLVELLEFTDTKVQRAAAGALRTLAFKND-ENKNQIVECNALPTLILMLRSEDSAIHYEA 269
LV +L D K Q+ AA A+ E +V C + L+ +L ++D+ I
Sbjct: 362 FLVGVLSKADFKTQKEAAWAITNYTSGGTVEQIVYLVHCGIIEPLMNLLSAKDTKIIQVI 421
Query: 270 VGVIGNLVHSS 280
+ I N+ ++
Sbjct: 422 LDAISNIFQAA 432
>pdb|3FEX|C Chain C, Crystal Structure Of The Cbc-Importin Alpha Complex.
pdb|3FEY|C Chain C, Crystal Structure Of The Cbc-Importin Alpha Complex
Length = 467
Score = 73.2 bits (178), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 70/294 (23%), Positives = 129/294 (43%), Gaps = 24/294 (8%)
Query: 100 IVEGGAVPALVKHLQAPPTSEADRNLKPFEHEVEKGSAFALGLLAVKPEHQQLIVDNGAL 159
+V+GGA+PA + L +P +++ + + GS F + L++ GA+
Sbjct: 90 VVDGGAIPAFISLLASPHAHISEQAVWALGNIAGDGSVF-----------RDLVIKYGAV 138
Query: 160 SHLVNLLKRHMDSNCSRAVNSVIRRAADAITNLAHENSSIKTRVRMEGGIPPLVELLEFT 219
L+ LL + S +R ++NL + +E +P LV LL
Sbjct: 139 DPLLALLAV---PDMSSLACGYLRNLTWTLSNLCRNKNPAPPIDAVEQILPTLVRLLHHD 195
Query: 220 DTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSEDSAIHYEAVGVIGNLVHS 279
D +V A+ L +E +V+ +P L+ +L + + I A+ IGN+V
Sbjct: 196 DPEVLADTCWAISYLTDGPNERIGMVVKTGVVPQLVKLLGASELPIVTPALRAIGNIVTG 255
Query: 280 SPNIKKEVLAAGALQPVIGLLSSCCSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLI 339
+ + V+ AGAL LL++ + Q+EA + A D +V G V L+
Sbjct: 256 TDEQTQVVIDAGALAVFPSLLTNPKTNIQKEATWTMSNITAGRQDQIQQVVNHGLVPFLV 315
Query: 340 EMLQSPDVQLREMSAFAL------GRLAQDMHNQAGIAHNGGLVPLLKLLDSKN 387
+L D + ++ + +A+ G + Q ++ + H G + PL+ LL +K+
Sbjct: 316 SVLSKADFKTQKEAVWAVTNYTSGGTVEQIVY----LVHCGIIEPLMNLLTAKD 365
Score = 52.4 bits (124), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 48/209 (22%), Positives = 89/209 (42%), Gaps = 18/209 (8%)
Query: 225 RAAAGALRTLAFKNDENKNQIVECNALPTLILML-RSEDSAIHYEAVGVIGNLVHSSPNI 283
+A A + L+ + + I+ +P + L R++ S I +E+ + N+ +
Sbjct: 27 QATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGRTDCSPIQFESAWALTNIASGTSEQ 86
Query: 284 KKEVLAAGALQPVIGLLSSCCSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQ 343
K V+ GA+ I LL+S + +A LG A S + +++ GAV PL+ +L
Sbjct: 87 TKAVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGDGSVFRDLVIKYGAVDPLLALLA 146
Query: 344 SPDVQLREMSAFALGRLAQDMHNQAGIAHNGGLVP-----------LLKLLDSKNGSLQH 392
PD MS+ A G L + + N P L++LL + +
Sbjct: 147 VPD-----MSSLACGYLRNLTWTLSNLCRNKNPAPPIDAVEQILPTLVRLLHHDDPEVLA 201
Query: 393 NAAFALYGLADN-EDNVADFIRVGGVQKL 420
+ +A+ L D + + ++ G V +L
Sbjct: 202 DTCWAISYLTDGPNERIGMVVKTGVVPQL 230
Score = 50.8 bits (120), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 47/184 (25%), Positives = 78/184 (42%), Gaps = 7/184 (3%)
Query: 207 GGIPPLVELLEFTD-TKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSEDSAI 265
G IP V L TD + +Q +A AL +A E +V+ A+P I +L S + I
Sbjct: 51 GLIPKFVSFLGRTDCSPIQFESAWALTNIASGTSEQTKAVVDGGAIPAFISLLASPHAHI 110
Query: 266 HYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLL-----SSCCSESQREAALLLGQFAA 320
+AV +GN+ + V+ GA+ P++ LL SS R L
Sbjct: 111 SEQAVWALGNIAGDGSVFRDLVIKYGAVDPLLALLAVPDMSSLACGYLRNLTWTLSNLCR 170
Query: 321 TDSDCKVHIVQRGAVRPLIEMLQSPDVQLREMSAFALGRLAQDMHNQAGIAHNGGLVP-L 379
+ + L+ +L D ++ + +A+ L + + G+ G+VP L
Sbjct: 171 NKNPAPPIDAVEQILPTLVRLLHHDDPEVLADTCWAISYLTDGPNERIGMVVKTGVVPQL 230
Query: 380 LKLL 383
+KLL
Sbjct: 231 VKLL 234
Score = 35.4 bits (80), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 66/322 (20%), Positives = 120/322 (37%), Gaps = 61/322 (18%)
Query: 153 IVDNGALSHLVNLLKRHMDSNCSRAVNSVIRRAADAITNLAHENSSIKTRVRMEGG-IPP 211
I+ G + V+ L R ++CS + +A A+TN+A S +T+ ++GG IP
Sbjct: 47 IIRAGLIPKFVSFLGR---TDCS----PIQFESAWALTNIASGTSE-QTKAVVDGGAIPA 98
Query: 212 LVELLE-----------------------FTDTKVQRA-----------------AAGAL 231
+ LL F D ++ A G L
Sbjct: 99 FISLLASPHAHISEQAVWALGNIAGDGSVFRDLVIKYGAVDPLLALLAVPDMSSLACGYL 158
Query: 232 RTLAFKNDE---NKNQIVECNA----LPTLILMLRSEDSAIHYEAVGVIGNLVHSSPNIK 284
R L + NKN +A LPTL+ +L +D + + I L
Sbjct: 159 RNLTWTLSNLCRNKNPAPPIDAVEQILPTLVRLLHHDDPEVLADTCWAISYLTDGPNERI 218
Query: 285 KEVLAAGALQPVIGLLSSCCSESQREAALLLGQF-AATDSDCKVHIVQRGAVRPLIEMLQ 343
V+ G + ++ LL + A +G TD +V ++ GA+ +L
Sbjct: 219 GMVVKTGVVPQLVKLLGASELPIVTPALRAIGNIVTGTDEQTQV-VIDAGALAVFPSLLT 277
Query: 344 SPDVQLREMSAFALGRLAQDMHNQAGIAHNGGLVP-LLKLLDSKNGSLQHNAAFAL--YG 400
+P +++ + + + + +Q N GLVP L+ +L + Q A +A+ Y
Sbjct: 278 NPKTNIQKEATWTMSNITAGRQDQIQQVVNHGLVPFLVSVLSKADFKTQKEAVWAVTNYT 337
Query: 401 LADNEDNVADFIRVGGVQKLQD 422
+ + + G ++ L +
Sbjct: 338 SGGTVEQIVYLVHCGIIEPLMN 359
>pdb|4DB8|A Chain A, Designed Armadillo-Repeat Protein
pdb|4DB8|B Chain B, Designed Armadillo-Repeat Protein
pdb|4DB8|C Chain C, Designed Armadillo-Repeat Protein
pdb|4DB8|D Chain D, Designed Armadillo-Repeat Protein
Length = 252
Score = 72.0 bits (175), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 55/196 (28%), Positives = 98/196 (50%), Gaps = 1/196 (0%)
Query: 207 GGIPPLVELLEFTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSEDSAIH 266
G +P LV+LL + ++ + A AL +A +E +++ ALP L+ +L S + I
Sbjct: 54 GALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQIL 113
Query: 267 YEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLSSCCSESQREAALLLGQFAATDSDCK 326
EA+ + N+ + V+ AGAL ++ LLSS + +EA L A+ ++
Sbjct: 114 QEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQI 173
Query: 327 VHIVQRGAVRPLIEMLQSPDVQLREMSAFALGRLAQDMHNQA-GIAHNGGLVPLLKLLDS 385
++ GA+ L+++L SP+ Q+ + + +AL +A + Q + G L L +L
Sbjct: 174 QAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQKQAVKEAGALEKLEQLQSH 233
Query: 386 KNGSLQHNAAFALYGL 401
+N +Q A AL L
Sbjct: 234 ENEKIQKEAQEALEKL 249
Score = 69.7 bits (169), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 58/197 (29%), Positives = 96/197 (48%), Gaps = 9/197 (4%)
Query: 148 EHQQLIVDNGALSHLVNLLKRHMDSNCSRAVNSVIRRAADAITNLAHENSSIKTRVRMEG 207
E Q ++D GAL LV LL S +++ A A++N+A + V G
Sbjct: 45 EQIQAVIDAGALPALVQLL--------SSPNEQILQEALWALSNIASGGNEQIQAVIDAG 96
Query: 208 GIPPLVELLEFTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSEDSAIHY 267
+P LV+LL + ++ + A AL +A +E +++ ALP L+ +L S + I
Sbjct: 97 ALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQ 156
Query: 268 EAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLSSCCSESQREAALLLGQFAATDSDCKV 327
EA+ + N+ + V+ AGAL ++ LLSS + +EA L A+ ++ K
Sbjct: 157 EALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQKQ 216
Query: 328 HIVQRGAVRPLIEMLQS 344
+ + GA+ L E LQS
Sbjct: 217 AVKEAGALEKL-EQLQS 232
Score = 68.6 bits (166), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 54/215 (25%), Positives = 105/215 (48%), Gaps = 2/215 (0%)
Query: 209 IPPLVELLEFTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSEDSAIHYE 268
+P + + L D + Q +A + +E +++ ALP L+ +L S + I E
Sbjct: 14 LPQMTQQLNSDDMQEQLSATRKFSQILSDGNEQIQAVIDAGALPALVQLLSSPNEQILQE 73
Query: 269 AVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLSSCCSESQREAALLLGQFAATDSDCKVH 328
A+ + N+ + V+ AGAL ++ LLSS + +EA L A+ ++
Sbjct: 74 ALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQA 133
Query: 329 IVQRGAVRPLIEMLQSPDVQLREMSAFALGRLAQDMHNQAGIAHNGGLVP-LLKLLDSKN 387
++ GA+ L+++L SP+ Q+ + + +AL +A + Q + G +P L++LL S N
Sbjct: 134 VIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPN 193
Query: 388 GSLQHNAAFALYGLADNEDNVADFIR-VGGVQKLQ 421
+ A +AL +A + ++ G ++KL+
Sbjct: 194 EQILQEALWALSNIASGGNEQKQAVKEAGALEKLE 228
Score = 68.6 bits (166), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 61/223 (27%), Positives = 106/223 (47%), Gaps = 21/223 (9%)
Query: 90 LAKNEEVVNWIVEGGAVPALVKHLQAPPTSEADRNLKPFEHEVEKGSAFALGLLAVKPEH 149
L+ E + +++ GA+PALV+ L +P ++ + + +AL +A
Sbjct: 40 LSDGNEQIQAVIDAGALPALVQLLSSP------------NEQILQEALWALSNIASGGNE 87
Query: 150 Q-QLIVDNGALSHLVNLLKRHMDSNCSRAVNSVIRRAADAITNLAHENSSIKTRVRMEGG 208
Q Q ++D GAL LV LL S +++ A A++N+A + V G
Sbjct: 88 QIQAVIDAGALPALVQLL--------SSPNEQILQEALWALSNIASGGNEQIQAVIDAGA 139
Query: 209 IPPLVELLEFTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSEDSAIHYE 268
+P LV+LL + ++ + A AL +A +E +++ ALP L+ +L S + I E
Sbjct: 140 LPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQE 199
Query: 269 AVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLSSCCSESQREA 311
A+ + N+ K+ V AGAL+ + L S + Q+EA
Sbjct: 200 ALWALSNIASGGNEQKQAVKEAGALEKLEQLQSHENEKIQKEA 242
>pdb|2YNS|A Chain A, Rimp_alpha_b54nls
pdb|2YNS|B Chain B, Rimp_alpha_b54nls
pdb|4B8O|A Chain A, Rimp_alpha_sv40tagnls
pdb|4B8P|A Chain A, Rimp_alpha_a89nls
pdb|4B8P|B Chain B, Rimp_alpha_a89nls
Length = 490
Score = 67.4 bits (163), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 76/312 (24%), Positives = 144/312 (46%), Gaps = 33/312 (10%)
Query: 79 AAKRATHVLAELAKNEEVVNWIVEGGAVPALVKHLQAPPTSEADRNLKPFEHEVEKGSAF 138
AA T++ + ++N +VV ++ GAVP VK L S +D +V + + +
Sbjct: 100 AAWALTNIASGTSENTKVV---IDHGAVPIFVKLL----GSSSD--------DVREQAVW 144
Query: 139 ALGLLAV-KPEHQQLIVDNGALSHLVNLLKRHMDSNCSRAVNSVIRRAADAITNLAH--- 194
ALG +A P+ + L++ NGAL L+ L H S++R A ++N
Sbjct: 145 ALGNVAGDSPKCRDLVLANGALLPLLAQLNEHTKL-------SMLRNATWTLSNFCRGKP 197
Query: 195 ENSSIKTRVRMEGGIPPLVELLEFTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTL 254
+ S +TR +P L L+ D +V A AL L+ ++ ++E P L
Sbjct: 198 QPSFEQTRP----ALPALARLIHSNDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRL 253
Query: 255 ILMLRSEDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLSSCCSES-QREAAL 313
+ +L ++ A+ +GN+V + ++ AL ++ LL+ +S ++EA
Sbjct: 254 VELLLHPSPSVLIPALRTVGNIVTGDDAQTQCIIDHQALPCLLSLLTQNLKKSIKKEACW 313
Query: 314 LLGQFAATDSDCKVHIVQRGAVRPLIEMLQSPDVQLREMSAFALGR-LAQDMHNQAG-IA 371
+ A + D ++ G + PL+ +LQ+ + +++ +A+A+ + H+Q +
Sbjct: 314 TISNITAGNKDQIQAVINAGIIGPLVNLLQTAEFDIKKEAAWAISNATSGGSHDQIKYLV 373
Query: 372 HNGGLVPLLKLL 383
G + PL LL
Sbjct: 374 SEGCIKPLCDLL 385
Score = 56.2 bits (134), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 53/195 (27%), Positives = 87/195 (44%), Gaps = 4/195 (2%)
Query: 192 LAHENSSIKTRVRMEGGIPPLVELLEFTD-TKVQRAAAGALRTLAFKNDENKNQIVECNA 250
L+ E S V G +P V+ L D ++Q AA AL +A EN +++ A
Sbjct: 64 LSIERSPPIEEVIQSGVVPRFVQFLTREDFPQLQFEAAWALTNIASGTSENTKVVIDHGA 123
Query: 251 LPTLILMLRSEDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLSSCCSESQ-R 309
+P + +L S + +AV +GN+ SP + VLA GAL P++ L+ S R
Sbjct: 124 VPIFVKLLGSSSDDVREQAVWALGNVAGDSPKCRDLVLANGALLPLLAQLNEHTKLSMLR 183
Query: 310 EAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQSPDVQLREMSAFALGRLAQDMHNQAG 369
A L F R A+ L ++ S D ++ + +AL L+ +++
Sbjct: 184 NATWTLSNFCRGKPQPSFEQT-RPALPALARLIHSNDEEVLTDACWALSYLSDGTNDKIQ 242
Query: 370 IAHNGGLVP-LLKLL 383
G+ P L++LL
Sbjct: 243 AVIEAGVCPRLVELL 257
>pdb|4B8J|A Chain A, Rimp_alpha1a
Length = 528
Score = 67.4 bits (163), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 76/312 (24%), Positives = 144/312 (46%), Gaps = 33/312 (10%)
Query: 79 AAKRATHVLAELAKNEEVVNWIVEGGAVPALVKHLQAPPTSEADRNLKPFEHEVEKGSAF 138
AA T++ + ++N +VV ++ GAVP VK L S +D +V + + +
Sbjct: 138 AAWALTNIASGTSENTKVV---IDHGAVPIFVKLL----GSSSD--------DVREQAVW 182
Query: 139 ALGLLAV-KPEHQQLIVDNGALSHLVNLLKRHMDSNCSRAVNSVIRRAADAITNLAH--- 194
ALG +A P+ + L++ NGAL L+ L H S++R A ++N
Sbjct: 183 ALGNVAGDSPKCRDLVLANGALLPLLAQLNEHTKL-------SMLRNATWTLSNFCRGKP 235
Query: 195 ENSSIKTRVRMEGGIPPLVELLEFTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTL 254
+ S +TR +P L L+ D +V A AL L+ ++ ++E P L
Sbjct: 236 QPSFEQTR----PALPALARLIHSNDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRL 291
Query: 255 ILMLRSEDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLSSCCSES-QREAAL 313
+ +L ++ A+ +GN+V + ++ AL ++ LL+ +S ++EA
Sbjct: 292 VELLLHPSPSVLIPALRTVGNIVTGDDAQTQCIIDHQALPCLLSLLTQNLKKSIKKEACW 351
Query: 314 LLGQFAATDSDCKVHIVQRGAVRPLIEMLQSPDVQLREMSAFALGR-LAQDMHNQAG-IA 371
+ A + D ++ G + PL+ +LQ+ + +++ +A+A+ + H+Q +
Sbjct: 352 TISNITAGNKDQIQAVINAGIIGPLVNLLQTAEFDIKKEAAWAISNATSGGSHDQIKYLV 411
Query: 372 HNGGLVPLLKLL 383
G + PL LL
Sbjct: 412 SEGCIKPLCDLL 423
Score = 56.2 bits (134), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 53/195 (27%), Positives = 87/195 (44%), Gaps = 4/195 (2%)
Query: 192 LAHENSSIKTRVRMEGGIPPLVELLEFTD-TKVQRAAAGALRTLAFKNDENKNQIVECNA 250
L+ E S V G +P V+ L D ++Q AA AL +A EN +++ A
Sbjct: 102 LSIERSPPIEEVIQSGVVPRFVQFLTREDFPQLQFEAAWALTNIASGTSENTKVVIDHGA 161
Query: 251 LPTLILMLRSEDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLSSCCSESQ-R 309
+P + +L S + +AV +GN+ SP + VLA GAL P++ L+ S R
Sbjct: 162 VPIFVKLLGSSSDDVREQAVWALGNVAGDSPKCRDLVLANGALLPLLAQLNEHTKLSMLR 221
Query: 310 EAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQSPDVQLREMSAFALGRLAQDMHNQAG 369
A L F R A+ L ++ S D ++ + +AL L+ +++
Sbjct: 222 NATWTLSNFCRGKPQPSFEQT-RPALPALARLIHSNDEEVLTDACWALSYLSDGTNDKIQ 280
Query: 370 IAHNGGLVP-LLKLL 383
G+ P L++LL
Sbjct: 281 AVIEAGVCPRLVELL 295
>pdb|3HTM|A Chain A, Structures Of Spop-Substrate Complexes: Insights Into
Molecular Architectures Of Btb-Cul3 Ubiquitin Ligases:
Spopbtb3-Box
pdb|3HTM|B Chain B, Structures Of Spop-Substrate Complexes: Insights Into
Molecular Architectures Of Btb-Cul3 Ubiquitin Ligases:
Spopbtb3-Box
pdb|3HTM|C Chain C, Structures Of Spop-Substrate Complexes: Insights Into
Molecular Architectures Of Btb-Cul3 Ubiquitin Ligases:
Spopbtb3-Box
pdb|3HTM|D Chain D, Structures Of Spop-Substrate Complexes: Insights Into
Molecular Architectures Of Btb-Cul3 Ubiquitin Ligases:
Spopbtb3-Box
Length = 172
Score = 64.7 bits (156), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 49/147 (33%), Positives = 72/147 (48%), Gaps = 3/147 (2%)
Query: 535 PQVYLGDQ---FVNNATLSDVTFLVEGRRFYAHRICLLASSDAFRAMFDGGYREKDARDI 591
P+ L D+ N+ +D V G+ F AH+ L A S F A F+ E +
Sbjct: 17 PECRLADELGGLWENSRFTDCCLCVAGQEFQAHKAILAARSPVFSAXFEHEXEESKKNRV 76
Query: 592 EIPNIRWEVFELMMRFIYTGSVDVTLDIAQDLLRAADQYLLEGLKRLCEYTIAQDISLEN 651
EI ++ EVF+ FIYTG A DLL AAD+Y LE LK CE + ++S+EN
Sbjct: 77 EINDVEPEVFKEXXCFIYTGKAPNLDKXADDLLAAADKYALERLKVXCEDALCSNLSVEN 136
Query: 652 VSSMYELSEAFHAISLRHTCILYIMEH 678
+ + L++ A L+ + +I H
Sbjct: 137 AAEILILADLHSADQLKTQAVDFINYH 163
>pdb|4DB9|A Chain A, Designed Armadillo Repeat Protein (Yiiim3aiii)
pdb|4DB9|B Chain B, Designed Armadillo Repeat Protein (Yiiim3aiii)
pdb|4DB9|C Chain C, Designed Armadillo Repeat Protein (Yiiim3aiii)
pdb|4DB9|D Chain D, Designed Armadillo Repeat Protein (Yiiim3aiii)
pdb|4DB9|E Chain E, Designed Armadillo Repeat Protein (Yiiim3aiii)
pdb|4DB9|F Chain F, Designed Armadillo Repeat Protein (Yiiim3aiii)
Length = 210
Score = 64.7 bits (156), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 52/191 (27%), Positives = 93/191 (48%), Gaps = 1/191 (0%)
Query: 209 IPPLVELLEFTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSEDSAIHYE 268
+P +V+ L D + ++A L +A +E +++ ALP L+ +L S + I E
Sbjct: 14 LPQMVQQLNSPDQQELQSALRKLSQIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQE 73
Query: 269 AVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLSSCCSESQREAALLLGQFAATDSDCKVH 328
A+ + N+ + V+ AGAL ++ LLSS + +EA L A+ ++
Sbjct: 74 ALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQA 133
Query: 329 IVQRGAVRPLIEMLQSPDVQLREMSAFALGRLAQDMHNQAGIAHNGGLVPLLKLLDSK-N 387
++ GA+ L+++L SP+ Q+ + + +AL +A + Q G P L+ L S N
Sbjct: 134 VIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQKQAVKEAGAEPALEQLQSSPN 193
Query: 388 GSLQHNAAFAL 398
+Q A AL
Sbjct: 194 EKIQKEAQEAL 204
Score = 63.5 bits (153), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 57/210 (27%), Positives = 94/210 (44%), Gaps = 21/210 (10%)
Query: 103 GGAVPALVKHLQAPPTSEADRNLKPFEHEVEKGSAFALGLLAVKPEHQQLIVDNGALSHL 162
G +P +V+ L +P E L+ G+ E Q ++D GAL L
Sbjct: 11 GSELPQMVQQLNSPDQQELQSALRKLSQIASGGN-----------EQIQAVIDAGALPAL 59
Query: 163 VNLLKRHMDSNCSRAVNSVIRRAADAITNLAHENSSIKTRVRMEGGIPPLVELLEFTDTK 222
V LL S +++ A A++N+A + V G +P LV+LL + +
Sbjct: 60 VQLL--------SSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQ 111
Query: 223 VQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSEDSAIHYEAVGVIGNLVHSSPN 282
+ + A AL +A +E +++ ALP L+ +L S + I EA+ + N+
Sbjct: 112 ILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNE 171
Query: 283 IKKEVLAAGALQPVIGLLSSCCSES-QREA 311
K+ V AGA +P + L S +E Q+EA
Sbjct: 172 QKQAVKEAGA-EPALEQLQSSPNEKIQKEA 200
Score = 60.5 bits (145), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 45/155 (29%), Positives = 82/155 (52%), Gaps = 2/155 (1%)
Query: 207 GGIPPLVELLEFTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSEDSAIH 266
G +P LV+LL + ++ + A AL +A +E +++ ALP L+ +L S + I
Sbjct: 54 GALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQIL 113
Query: 267 YEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLSSCCSESQREAALLLGQFAATDSDCK 326
EA+ + N+ + V+ AGAL ++ LLSS + +EA L A+ ++ K
Sbjct: 114 QEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQK 173
Query: 327 VHIVQRGAVRPLIEMLQ-SPDVQLREMSAFALGRL 360
+ + GA P +E LQ SP+ ++++ + AL ++
Sbjct: 174 QAVKEAGA-EPALEQLQSSPNEKIQKEAQEALEKI 207
Score = 53.5 bits (127), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 57/215 (26%), Positives = 97/215 (45%), Gaps = 28/215 (13%)
Query: 57 SEVSAQVNVLNTTFSWLEADRAAAKRATHVLAELAKN-EEVVNWIVEGGAVPALVKHLQA 115
SE+ V LN+ D+ + A L+++A E + +++ GA+PALV+ L +
Sbjct: 12 SELPQMVQQLNSP------DQQELQSALRKLSQIASGGNEQIQAVIDAGALPALVQLLSS 65
Query: 116 PPTSEADRNLKPFEHEVEKGSAFALGLLAVKPEHQ-QLIVDNGALSHLVNLLKRHMDSNC 174
P ++ + + +AL +A Q Q ++D GAL LV LL
Sbjct: 66 P------------NEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLL-------- 105
Query: 175 SRAVNSVIRRAADAITNLAHENSSIKTRVRMEGGIPPLVELLEFTDTKVQRAAAGALRTL 234
S +++ A A++N+A + V G +P LV+LL + ++ + A AL +
Sbjct: 106 SSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNI 165
Query: 235 AFKNDENKNQIVECNALPTLILMLRSEDSAIHYEA 269
A +E K + E A P L + S + I EA
Sbjct: 166 ASGGNEQKQAVKEAGAEPALEQLQSSPNEKIQKEA 200
Score = 42.4 bits (98), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 38/141 (26%), Positives = 66/141 (46%), Gaps = 21/141 (14%)
Query: 95 EVVNWIVEGGAVPALVKHLQAPPTSEADRNLKPFEHEVEKGSAFALGLLAVKPEHQ-QLI 153
E + +++ GA+PALV+ L +P ++ + + +AL +A Q Q +
Sbjct: 87 EQIQAVIDAGALPALVQLLSSP------------NEQILQEALWALSNIASGGNEQIQAV 134
Query: 154 VDNGALSHLVNLLKRHMDSNCSRAVNSVIRRAADAITNLAHENSSIKTRVRMEGGIPPLV 213
+D GAL LV LL S +++ A A++N+A + K V+ G P L
Sbjct: 135 IDAGALPALVQLL--------SSPNEQILQEALWALSNIASGGNEQKQAVKEAGAEPALE 186
Query: 214 ELLEFTDTKVQRAAAGALRTL 234
+L + K+Q+ A AL +
Sbjct: 187 QLQSSPNEKIQKEAQEALEKI 207
>pdb|4DB6|A Chain A, Designed Armadillo Repeat Protein (Yiiim3aii)
Length = 210
Score = 64.3 bits (155), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 56/209 (26%), Positives = 93/209 (44%), Gaps = 19/209 (9%)
Query: 103 GGAVPALVKHLQAPPTSEADRNLKPFEHEVEKGSAFALGLLAVKPEHQQLIVDNGALSHL 162
G +P +V+ L +P E L+ G+ E Q ++D GAL L
Sbjct: 11 GSELPQMVQQLNSPDQQELQSALRKLSQIASGGN-----------EQIQAVIDAGALPAL 59
Query: 163 VNLLKRHMDSNCSRAVNSVIRRAADAITNLAHENSSIKTRVRMEGGIPPLVELLEFTDTK 222
V LL S +++ A A++N+A + V G +P LV+LL + +
Sbjct: 60 VQLL--------SSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQ 111
Query: 223 VQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSEDSAIHYEAVGVIGNLVHSSPN 282
+ + A AL +A +E +++ ALP L+ +L S + I EA+ + N+
Sbjct: 112 ILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNE 171
Query: 283 IKKEVLAAGALQPVIGLLSSCCSESQREA 311
K+ V AGAL+ + L S + Q+EA
Sbjct: 172 QKQAVKEAGALEKLEQLQSHENEKIQKEA 200
Score = 63.2 bits (152), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 52/194 (26%), Positives = 95/194 (48%), Gaps = 1/194 (0%)
Query: 209 IPPLVELLEFTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSEDSAIHYE 268
+P +V+ L D + ++A L +A +E +++ ALP L+ +L S + I E
Sbjct: 14 LPQMVQQLNSPDQQELQSALRKLSQIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQE 73
Query: 269 AVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLSSCCSESQREAALLLGQFAATDSDCKVH 328
A+ + N+ + V+ AGAL ++ LLSS + +EA L A+ ++
Sbjct: 74 ALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQA 133
Query: 329 IVQRGAVRPLIEMLQSPDVQLREMSAFALGRLAQDMHNQA-GIAHNGGLVPLLKLLDSKN 387
++ GA+ L+++L SP+ Q+ + + +AL +A + Q + G L L +L +N
Sbjct: 134 VIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQKQAVKEAGALEKLEQLQSHEN 193
Query: 388 GSLQHNAAFALYGL 401
+Q A AL L
Sbjct: 194 EKIQKEAQEALEKL 207
Score = 58.2 bits (139), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 42/138 (30%), Positives = 71/138 (51%), Gaps = 1/138 (0%)
Query: 207 GGIPPLVELLEFTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSEDSAIH 266
G +P LV+LL + ++ + A AL +A +E +++ ALP L+ +L S + I
Sbjct: 54 GALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQIL 113
Query: 267 YEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLSSCCSESQREAALLLGQFAATDSDCK 326
EA+ + N+ + V+ AGAL ++ LLSS + +EA L A+ ++ K
Sbjct: 114 QEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQK 173
Query: 327 VHIVQRGAVRPLIEMLQS 344
+ + GA+ L E LQS
Sbjct: 174 QAVKEAGALEKL-EQLQS 190
Score = 52.4 bits (124), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 57/215 (26%), Positives = 97/215 (45%), Gaps = 28/215 (13%)
Query: 57 SEVSAQVNVLNTTFSWLEADRAAAKRATHVLAELAKN-EEVVNWIVEGGAVPALVKHLQA 115
SE+ V LN+ D+ + A L+++A E + +++ GA+PALV+ L +
Sbjct: 12 SELPQMVQQLNSP------DQQELQSALRKLSQIASGGNEQIQAVIDAGALPALVQLLSS 65
Query: 116 PPTSEADRNLKPFEHEVEKGSAFALGLLAVKPEHQ-QLIVDNGALSHLVNLLKRHMDSNC 174
P ++ + + +AL +A Q Q ++D GAL LV LL
Sbjct: 66 P------------NEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLL-------- 105
Query: 175 SRAVNSVIRRAADAITNLAHENSSIKTRVRMEGGIPPLVELLEFTDTKVQRAAAGALRTL 234
S +++ A A++N+A + V G +P LV+LL + ++ + A AL +
Sbjct: 106 SSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNI 165
Query: 235 AFKNDENKNQIVECNALPTLILMLRSEDSAIHYEA 269
A +E K + E AL L + E+ I EA
Sbjct: 166 ASGGNEQKQAVKEAGALEKLEQLQSHENEKIQKEA 200
Score = 42.0 bits (97), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 38/141 (26%), Positives = 66/141 (46%), Gaps = 21/141 (14%)
Query: 95 EVVNWIVEGGAVPALVKHLQAPPTSEADRNLKPFEHEVEKGSAFALGLLAVKPEHQ-QLI 153
E + +++ GA+PALV+ L +P ++ + + +AL +A Q Q +
Sbjct: 87 EQIQAVIDAGALPALVQLLSSP------------NEQILQEALWALSNIASGGNEQIQAV 134
Query: 154 VDNGALSHLVNLLKRHMDSNCSRAVNSVIRRAADAITNLAHENSSIKTRVRMEGGIPPLV 213
+D GAL LV LL S +++ A A++N+A + K V+ G + L
Sbjct: 135 IDAGALPALVQLL--------SSPNEQILQEALWALSNIASGGNEQKQAVKEAGALEKLE 186
Query: 214 ELLEFTDTKVQRAAAGALRTL 234
+L + K+Q+ A AL L
Sbjct: 187 QLQSHENEKIQKEAQEALEKL 207
>pdb|4DBA|A Chain A, Designed Armadillo Repeat Protein (Yiim3aii)
pdb|4DBA|B Chain B, Designed Armadillo Repeat Protein (Yiim3aii)
pdb|4DBA|C Chain C, Designed Armadillo Repeat Protein (Yiim3aii)
pdb|4DBA|D Chain D, Designed Armadillo Repeat Protein (Yiim3aii)
Length = 210
Score = 61.6 bits (148), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 50/194 (25%), Positives = 92/194 (47%), Gaps = 1/194 (0%)
Query: 209 IPPLVELLEFTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSEDSAIHYE 268
+P + + L D + Q +A + +E +++ ALP L+ +L S + I E
Sbjct: 14 LPQMTQQLNSDDMQEQLSATRKFSQILSDGNEQIQAVIDAGALPALVQLLSSPNEQILQE 73
Query: 269 AVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLSSCCSESQREAALLLGQFAATDSDCKVH 328
A+ + N+ + V+ AGAL ++ LLSS + +EA L A+ ++
Sbjct: 74 ALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQA 133
Query: 329 IVQRGAVRPLIEMLQSPDVQLREMSAFALGRLAQDMHNQA-GIAHNGGLVPLLKLLDSKN 387
++ GA+ L+++L SP+ Q+ + + +AL +A + Q + G L L +L +N
Sbjct: 134 VIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQKQAVKEAGALEKLEQLQSHEN 193
Query: 388 GSLQHNAAFALYGL 401
+Q A AL L
Sbjct: 194 EKIQKEAQEALEKL 207
Score = 60.1 bits (144), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 48/164 (29%), Positives = 79/164 (48%), Gaps = 8/164 (4%)
Query: 148 EHQQLIVDNGALSHLVNLLKRHMDSNCSRAVNSVIRRAADAITNLAHENSSIKTRVRMEG 207
E Q ++D GAL LV LL S +++ A A++N+A + V G
Sbjct: 45 EQIQAVIDAGALPALVQLL--------SSPNEQILQEALWALSNIASGGNEQIQAVIDAG 96
Query: 208 GIPPLVELLEFTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSEDSAIHY 267
+P LV+LL + ++ + A AL +A +E +++ ALP L+ +L S + I
Sbjct: 97 ALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQ 156
Query: 268 EAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLSSCCSESQREA 311
EA+ + N+ K+ V AGAL+ + L S + Q+EA
Sbjct: 157 EALWALSNIASGGNEQKQAVKEAGALEKLEQLQSHENEKIQKEA 200
Score = 58.9 bits (141), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 42/138 (30%), Positives = 71/138 (51%), Gaps = 1/138 (0%)
Query: 207 GGIPPLVELLEFTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSEDSAIH 266
G +P LV+LL + ++ + A AL +A +E +++ ALP L+ +L S + I
Sbjct: 54 GALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQIL 113
Query: 267 YEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLSSCCSESQREAALLLGQFAATDSDCK 326
EA+ + N+ + V+ AGAL ++ LLSS + +EA L A+ ++ K
Sbjct: 114 QEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQK 173
Query: 327 VHIVQRGAVRPLIEMLQS 344
+ + GA+ L E LQS
Sbjct: 174 QAVKEAGALEKL-EQLQS 190
Score = 53.1 bits (126), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 49/181 (27%), Positives = 83/181 (45%), Gaps = 21/181 (11%)
Query: 90 LAKNEEVVNWIVEGGAVPALVKHLQAPPTSEADRNLKPFEHEVEKGSAFALGLLAVKPEH 149
L+ E + +++ GA+PALV+ L +P ++ + + +AL +A
Sbjct: 40 LSDGNEQIQAVIDAGALPALVQLLSSP------------NEQILQEALWALSNIASGGNE 87
Query: 150 Q-QLIVDNGALSHLVNLLKRHMDSNCSRAVNSVIRRAADAITNLAHENSSIKTRVRMEGG 208
Q Q ++D GAL LV LL S +++ A A++N+A + V G
Sbjct: 88 QIQAVIDAGALPALVQLL--------SSPNEQILQEALWALSNIASGGNEQIQAVIDAGA 139
Query: 209 IPPLVELLEFTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSEDSAIHYE 268
+P LV+LL + ++ + A AL +A +E K + E AL L + E+ I E
Sbjct: 140 LPALVQLLSSPNEQILQEALWALSNIASGGNEQKQAVKEAGALEKLEQLQSHENEKIQKE 199
Query: 269 A 269
A
Sbjct: 200 A 200
Score = 42.7 bits (99), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 38/141 (26%), Positives = 66/141 (46%), Gaps = 21/141 (14%)
Query: 95 EVVNWIVEGGAVPALVKHLQAPPTSEADRNLKPFEHEVEKGSAFALGLLAVKPEHQ-QLI 153
E + +++ GA+PALV+ L +P ++ + + +AL +A Q Q +
Sbjct: 87 EQIQAVIDAGALPALVQLLSSP------------NEQILQEALWALSNIASGGNEQIQAV 134
Query: 154 VDNGALSHLVNLLKRHMDSNCSRAVNSVIRRAADAITNLAHENSSIKTRVRMEGGIPPLV 213
+D GAL LV LL S +++ A A++N+A + K V+ G + L
Sbjct: 135 IDAGALPALVQLL--------SSPNEQILQEALWALSNIASGGNEQKQAVKEAGALEKLE 186
Query: 214 ELLEFTDTKVQRAAAGALRTL 234
+L + K+Q+ A AL L
Sbjct: 187 QLQSHENEKIQKEAQEALEKL 207
>pdb|3L6X|A Chain A, Crystal Structure Of P120 Catenin In Complex With
E-Cadherin
pdb|3L6Y|A Chain A, Crystal Structure Of P120 Catenin In Complex With
E-cadherin
pdb|3L6Y|C Chain C, Crystal Structure Of P120 Catenin In Complex With
E-cadherin
pdb|3L6Y|E Chain E, Crystal Structure Of P120 Catenin In Complex With
E-cadherin
Length = 584
Score = 57.4 bits (137), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 39/113 (34%), Positives = 62/113 (54%), Gaps = 3/113 (2%)
Query: 178 VNSVIRRAADAITNLAHENSSIKTRVRMEGGIPPLVELLEFTDTKVQRAAAGALRTLAFK 237
+++V AA + +L + N +KT VR GIP LV LL+ +V A GAL+ ++F
Sbjct: 61 LDAVKSNAAAYLQHLCYRNDKVKTDVRKLKGIPVLVGLLDHPKKEVHLGACGALKNISFG 120
Query: 238 NDE-NKNQIVECNALPTLILMLR-SEDSAIHYEAVGVIGNLVHSSPNIKKEVL 288
D+ NK I C+ +P L+ +LR + D + G + NL S +IK E++
Sbjct: 121 RDQDNKIAIKNCDGVPALVRLLRKARDMDLTEVITGTLWNL-SSHDSIKMEIV 172
Score = 38.1 bits (87), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 18/68 (26%), Positives = 35/68 (51%)
Query: 209 IPPLVELLEFTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSEDSAIHYE 268
+P ++ +L F V+ AA L+ L ++ND+ K + + +P L+ +L +H
Sbjct: 50 LPEVIAMLGFRLDAVKSNAAAYLQHLCYRNDKVKTDVRKLKGIPVLVGLLDHPKKEVHLG 109
Query: 269 AVGVIGNL 276
A G + N+
Sbjct: 110 ACGALKNI 117
Score = 35.4 bits (80), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 40/150 (26%), Positives = 75/150 (50%), Gaps = 16/150 (10%)
Query: 180 SVIRRAADAITNLAHENSS----IKTRVRMEGGIPPLVELLEFTDTKVQRAAAGALRTLA 235
+++ +A AI NL + I++ +R E + + +LL +V +AA+GALR LA
Sbjct: 324 AILEASAGAIQNLCAGRWTYGRYIRSALRQEKALSAIADLLTNEHERVVKAASGALRNLA 383
Query: 236 FKNDENKNQIVECNALPTLILMLRS--EDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGAL 293
D +++ +A+P L+ L ++S+ ++ VI L + I + + AA L
Sbjct: 384 V--DARNKELIGKHAIPNLVKNLPGGQQNSSWNFSEDTVISILNTINEVIAENLEAAKKL 441
Query: 294 QPVIG-----LLSSCCSESQRE---AALLL 315
+ G L++ + S++E AAL+L
Sbjct: 442 RETQGIEKLVLINKSGNRSEKEVRAAALVL 471
>pdb|2C1T|A Chain A, Structure Of The Kap60p:nup2 Complex
pdb|2C1T|B Chain B, Structure Of The Kap60p:nup2 Complex
Length = 454
Score = 55.1 bits (131), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 40/149 (26%), Positives = 71/149 (47%), Gaps = 3/149 (2%)
Query: 212 LVELLEFTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSEDSAIHYEAVG 271
LVELL T VQ A A+ + ND ++ LP L L+L S I EA
Sbjct: 217 LVELLSHESTLVQTPALRAVGNIVTGNDLQTQVVINAGVLPALRLLLSSPKENIKKEACW 276
Query: 272 VIGNLVHSSPNIKKEVLAAGALQPVIGLLSSCCSESQREAALLLGQFAATD---SDCKVH 328
I N+ + + V+ A + P++ LL ++++EA + ++ D +
Sbjct: 277 TISNITAGNTEQIQAVIDANLIPPLVKLLEVAEDKTKKEACWAISNASSGGLQRPDIIRY 336
Query: 329 IVQRGAVRPLIEMLQSPDVQLREMSAFAL 357
+V +G ++PL ++L+ D ++ E++ AL
Sbjct: 337 LVSQGCIKPLCDLLEIADNRIIEVTLDAL 365
Score = 50.8 bits (120), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 64/307 (20%), Positives = 133/307 (43%), Gaps = 25/307 (8%)
Query: 131 EVEKGSAFALGLLAV-KPEHQQLIVDNGALSHLVNLLKRHMDSNCSRAVNSVIRRAADAI 189
EV++ + +ALG +A +++ ++ A+ ++ L + S +IR A +
Sbjct: 101 EVKEQAIWALGNVAGDSTDYRDYVLQCNAMEPILGLFNSNKPS--------LIRTATWTL 152
Query: 190 TNLAHENSSIKTRVRMEGGIPPLVELLEFTDTKVQRAAAGALRTLAFKNDENKNQIVECN 249
+NL + +P L +L+ DT+ A A+ L+ E +++
Sbjct: 153 SNLCRGKKPQPDWSVVSQALPTLAKLIYSMDTETLVDACWAISYLSDGPQEAIQAVIDVR 212
Query: 250 ALPTLILMLRSEDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLSSCCSESQR 309
L+ +L E + + A+ +GN+V + + V+ AG L + LLSS ++
Sbjct: 213 IPKRLVELLSHESTLVQTPALRAVGNIVTGNDLQTQVVINAGVLPALRLLLSSPKENIKK 272
Query: 310 EAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQSPDVQLREMSAFALGRLAQDMHNQAG 369
EA + A +++ ++ + PL+++L+ + + ++ + +A+ + +
Sbjct: 273 EACWTISNITAGNTEQIQAVIDANLIPPLVKLLEVAEDKTKKEACWAISNASSGGLQRPD 332
Query: 370 I----AHNGGLVPLLKLLDSKNGSLQHNAAFAL-----YGLADNE------DNVADFI-R 413
I G + PL LL+ + + AL G AD E + ADFI +
Sbjct: 333 IIRYLVSQGCIKPLCDLLEIADNRIIEVTLDALENILKMGEADKEARGLNINENADFIEK 392
Query: 414 VGGVQKL 420
GG++K+
Sbjct: 393 AGGMEKI 399
Score = 49.3 bits (116), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 42/201 (20%), Positives = 93/201 (46%), Gaps = 2/201 (0%)
Query: 184 RAADAITNLAHENSSIKTRVRMEG-GIPPLVELLEFTDTKVQRAAAGALRTLAFKNDENK 242
AA A+TN+A +S +T+V ++ +P ++LL +V+ A AL +A + + +
Sbjct: 63 EAAWALTNIAS-GTSAQTKVVVDADAVPLFIQLLYTGSVEVKEQAIWALGNVAGDSTDYR 121
Query: 243 NQIVECNALPTLILMLRSEDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLSS 302
+ +++CNA+ ++ + S ++ A + NL + + AL + L+ S
Sbjct: 122 DYVLQCNAMEPILGLFNSNKPSLIRTATWTLSNLCRGKKPQPDWSVVSQALPTLAKLIYS 181
Query: 303 CCSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQSPDVQLREMSAFALGRLAQ 362
+E+ +A + + + ++ + L+E+L ++ + A+G +
Sbjct: 182 MDTETLVDACWAISYLSDGPQEAIQAVIDVRIPKRLVELLSHESTLVQTPALRAVGNIVT 241
Query: 363 DMHNQAGIAHNGGLVPLLKLL 383
Q + N G++P L+LL
Sbjct: 242 GNDLQTQVVINAGVLPALRLL 262
Score = 49.3 bits (116), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 65/295 (22%), Positives = 124/295 (42%), Gaps = 18/295 (6%)
Query: 207 GGIPPLVELL-EFTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSEDSAI 265
G +P LVE + E +Q AA AL +A +V+ +A+P I +L + +
Sbjct: 43 GVVPRLVEFMRENQPEMLQLEAAWALTNIASGTSAQTKVVVDADAVPLFIQLLYTGSVEV 102
Query: 266 HYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLSSCCSESQREAALLLGQFAATDSDC 325
+A+ +GN+ S + + VL A++P++GL +S R A L
Sbjct: 103 KEQAIWALGNVAGDSTDYRDYVLQCNAMEPILGLFNSNKPSLIRTATWTLSNLCRGKKPQ 162
Query: 326 KVHIVQRGAVRPLIEMLQSPDVQLREMSAFALGRLAQDMHNQAGIAHNGGLVP--LLKLL 383
V A+ L +++ S D + + +A+ L+ D +A A +P L++LL
Sbjct: 163 PDWSVVSQALPTLAKLIYSMDTETLVDACWAISYLS-DGPQEAIQAVIDVRIPKRLVELL 221
Query: 384 DSKNGSLQHNAAFALYGLADNEDNVADFIRVGGVQKLQDGEFIVQATKDCVAK------- 436
++ +Q A A+ + D + GV L ++ + K+ + K
Sbjct: 222 SHESTLVQTPALRAVGNIVTGNDLQTQVVINAGV--LPALRLLLSSPKENIKKEACWTIS 279
Query: 437 -----TLKRLEEKIHGRVLNHLLYLMRVAEKGVQRRVALALAHLCSPDDQRTIFI 486
++++ I ++ L+ L+ VAE ++ A+++ S QR I
Sbjct: 280 NITAGNTEQIQAVIDANLIPPLVKLLEVAEDKTKKEACWAISNASSGGLQRPDII 334
>pdb|1UN0|A Chain A, Crystal Structure Of Yeast Karyopherin (Importin) Alpha In
Complex With A Nup2p N-Terminal Fragment
pdb|1UN0|B Chain B, Crystal Structure Of Yeast Karyopherin (Importin) Alpha In
Complex With A Nup2p N-Terminal Fragment
Length = 443
Score = 55.1 bits (131), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 40/149 (26%), Positives = 71/149 (47%), Gaps = 3/149 (2%)
Query: 212 LVELLEFTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSEDSAIHYEAVG 271
LVELL T VQ A A+ + ND ++ LP L L+L S I EA
Sbjct: 217 LVELLSHESTLVQTPALRAVGNIVTGNDLQTQVVINAGVLPALRLLLSSPKENIKKEACW 276
Query: 272 VIGNLVHSSPNIKKEVLAAGALQPVIGLLSSCCSESQREAALLLGQFAATD---SDCKVH 328
I N+ + + V+ A + P++ LL ++++EA + ++ D +
Sbjct: 277 TISNITAGNTEQIQAVIDANLIPPLVKLLEVAEDKTKKEACWAISNASSGGLQRPDIIRY 336
Query: 329 IVQRGAVRPLIEMLQSPDVQLREMSAFAL 357
+V +G ++PL ++L+ D ++ E++ AL
Sbjct: 337 LVSQGCIKPLCDLLEIADNRIIEVTLDAL 365
Score = 50.8 bits (120), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 64/307 (20%), Positives = 133/307 (43%), Gaps = 25/307 (8%)
Query: 131 EVEKGSAFALGLLAV-KPEHQQLIVDNGALSHLVNLLKRHMDSNCSRAVNSVIRRAADAI 189
EV++ + +ALG +A +++ ++ A+ ++ L + S +IR A +
Sbjct: 101 EVKEQAIWALGNVAGDSTDYRDYVLQCNAMEPILGLFNSNKPS--------LIRTATWTL 152
Query: 190 TNLAHENSSIKTRVRMEGGIPPLVELLEFTDTKVQRAAAGALRTLAFKNDENKNQIVECN 249
+NL + +P L +L+ DT+ A A+ L+ E +++
Sbjct: 153 SNLCRGKKPQPDWSVVSQALPTLAKLIYSMDTETLVDACWAISYLSDGPQEAIQAVIDVR 212
Query: 250 ALPTLILMLRSEDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLSSCCSESQR 309
L+ +L E + + A+ +GN+V + + V+ AG L + LLSS ++
Sbjct: 213 IPKRLVELLSHESTLVQTPALRAVGNIVTGNDLQTQVVINAGVLPALRLLLSSPKENIKK 272
Query: 310 EAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQSPDVQLREMSAFALGRLAQDMHNQAG 369
EA + A +++ ++ + PL+++L+ + + ++ + +A+ + +
Sbjct: 273 EACWTISNITAGNTEQIQAVIDANLIPPLVKLLEVAEDKTKKEACWAISNASSGGLQRPD 332
Query: 370 I----AHNGGLVPLLKLLDSKNGSLQHNAAFAL-----YGLADNE------DNVADFI-R 413
I G + PL LL+ + + AL G AD E + ADFI +
Sbjct: 333 IIRYLVSQGCIKPLCDLLEIADNRIIEVTLDALENILKMGEADKEARGLNINENADFIEK 392
Query: 414 VGGVQKL 420
GG++K+
Sbjct: 393 AGGMEKI 399
Score = 49.3 bits (116), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 44/219 (20%), Positives = 101/219 (46%), Gaps = 3/219 (1%)
Query: 185 AADAITNLAHENSSIKTRVRMEG-GIPPLVELLEFTDTKVQRAAAGALRTLAFKNDENKN 243
AA A+TN+A +S +T+V ++ +P ++LL +V+ A AL +A + + ++
Sbjct: 64 AAWALTNIAS-GTSAQTKVVVDADAVPLFIQLLYTGSVEVKEQAIWALGNVAGDSTDYRD 122
Query: 244 QIVECNALPTLILMLRSEDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLSSC 303
+++CNA+ ++ + S ++ A + NL + + AL + L+ S
Sbjct: 123 YVLQCNAMEPILGLFNSNKPSLIRTATWTLSNLCRGKKPQPDWSVVSQALPTLAKLIYSM 182
Query: 304 CSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQSPDVQLREMSAFALGRLAQD 363
+E+ +A + + + ++ + L+E+L ++ + A+G +
Sbjct: 183 DTETLVDACWAISYLSDGPQEAIQAVIDVRIPKRLVELLSHESTLVQTPALRAVGNIVTG 242
Query: 364 MHNQAGIAHNGGLVPLLK-LLDSKNGSLQHNAAFALYGL 401
Q + N G++P L+ LL S +++ A + + +
Sbjct: 243 NDLQTQVVINAGVLPALRLLLSSPKENIKKEACWTISNI 281
Score = 48.9 bits (115), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 65/295 (22%), Positives = 124/295 (42%), Gaps = 18/295 (6%)
Query: 207 GGIPPLVELL-EFTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSEDSAI 265
G +P LVE + E +Q AA AL +A +V+ +A+P I +L + +
Sbjct: 43 GVVPRLVEFMRENQPEMLQLEAAWALTNIASGTSAQTKVVVDADAVPLFIQLLYTGSVEV 102
Query: 266 HYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLSSCCSESQREAALLLGQFAATDSDC 325
+A+ +GN+ S + + VL A++P++GL +S R A L
Sbjct: 103 KEQAIWALGNVAGDSTDYRDYVLQCNAMEPILGLFNSNKPSLIRTATWTLSNLCRGKKPQ 162
Query: 326 KVHIVQRGAVRPLIEMLQSPDVQLREMSAFALGRLAQDMHNQAGIAHNGGLVP--LLKLL 383
V A+ L +++ S D + + +A+ L+ D +A A +P L++LL
Sbjct: 163 PDWSVVSQALPTLAKLIYSMDTETLVDACWAISYLS-DGPQEAIQAVIDVRIPKRLVELL 221
Query: 384 DSKNGSLQHNAAFALYGLADNEDNVADFIRVGGVQKLQDGEFIVQATKDCVAK------- 436
++ +Q A A+ + D + GV L ++ + K+ + K
Sbjct: 222 SHESTLVQTPALRAVGNIVTGNDLQTQVVINAGV--LPALRLLLSSPKENIKKEACWTIS 279
Query: 437 -----TLKRLEEKIHGRVLNHLLYLMRVAEKGVQRRVALALAHLCSPDDQRTIFI 486
++++ I ++ L+ L+ VAE ++ A+++ S QR I
Sbjct: 280 NITAGNTEQIQAVIDANLIPPLVKLLEVAEDKTKKEACWAISNASSGGLQRPDII 334
>pdb|3TJ3|A Chain A, Structure Of Importin A5 Bound To The N-Terminus Of Nup50
pdb|3TJ3|B Chain B, Structure Of Importin A5 Bound To The N-Terminus Of Nup50
Length = 447
Score = 55.1 bits (131), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 57/227 (25%), Positives = 102/227 (44%), Gaps = 16/227 (7%)
Query: 147 PEHQQLIVDNGALSHLVNLLKRHMDSNCSRAVNSVIRRAADAITNLAHENSSIKTRVRME 206
P ++I G ++ V LKR NC+ S A +TN+A NS ++TR+ ++
Sbjct: 51 PPIDEVISTPGVVARFVEFLKRK--ENCTLQFES-----AWVLTNIASGNS-LQTRIVIQ 102
Query: 207 GG-IPPLVELL--EFTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSEDS 263
G +P +ELL EF D VQ A AL +A + ++ +++CN LP L+ + ++
Sbjct: 103 AGAVPIFIELLSSEFED--VQEQAVWALGNIAGDSTMCRDYVLDCNILPPLLQLFSKQNR 160
Query: 264 -AIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLSSCCSESQREAALLLGQFAATD 322
+ AV + NL + + L + LL ++ +A L +
Sbjct: 161 LTMTRNAVWALSNLCRGKSPPPEFAKVSPCLNVLSWLLFVSDTDVLADACWALSYLSDGP 220
Query: 323 SDCKVHIVQRGAVRPLIEMLQSPDVQLREMSAFALGRL--AQDMHNQ 367
+D ++ G R L+E+L D ++ + A+G + D+ Q
Sbjct: 221 NDKIQAVIDAGVCRRLVELLMHNDYKVVSPALRAVGNIVTGDDIQTQ 267
Score = 43.1 bits (100), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 38/168 (22%), Positives = 76/168 (45%), Gaps = 3/168 (1%)
Query: 256 LMLRSEDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLSSCCSESQREAALLL 315
+ R E+ + +E+ V+ N+ + + V+ AGA+ I LLSS + Q +A L
Sbjct: 69 FLKRKENCTLQFESAWVLTNIASGNSLQTRIVIQAGAVPIFIELLSSEFEDVQEQAVWAL 128
Query: 316 GQFAATDSDCKVHIVQRGAVRPLIEMLQSPD-VQLREMSAFALGRLAQDMHNQAGIAHNG 374
G A + C+ +++ + PL+++ + + + + +AL L + A
Sbjct: 129 GNIAGDSTMCRDYVLDCNILPPLLQLFSKQNRLTMTRNAVWALSNLCRGKSPPPEFAKVS 188
Query: 375 GLVPLLK-LLDSKNGSLQHNAAFALYGLADN-EDNVADFIRVGGVQKL 420
+ +L LL + + +A +AL L+D D + I G ++L
Sbjct: 189 PCLNVLSWLLFVSDTDVLADACWALSYLSDGPNDKIQAVIDAGVCRRL 236
Score = 40.4 bits (93), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 66/294 (22%), Positives = 130/294 (44%), Gaps = 27/294 (9%)
Query: 100 IVEGGAVPALVKHLQAPPTSEADRNLKPFEHEVEKGSAFALGLLAVKPEH-QQLIVDNGA 158
+++ GAVP ++ L +SE FE +V++ + +ALG +A + ++D
Sbjct: 100 VIQAGAVPIFIELL----SSE-------FE-DVQEQAVWALGNIAGDSTMCRDYVLDCNI 147
Query: 159 LSHLVNLLKRHMDSNCSRAVNSVIRRAADAITNLAHENSSIKTRVRMEGGIPPLVELLEF 218
L L+ L + +R ++ R A A++NL S ++ + L LL
Sbjct: 148 LPPLLQLFSKQ-----NRL--TMTRNAVWALSNLCRGKSPPPEFAKVSPCLNVLSWLLFV 200
Query: 219 TDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSEDSAIHYEAVGVIGNLVH 278
+DT V A AL L+ ++ +++ L+ +L D + A+ +GN+V
Sbjct: 201 SDTDVLADACWALSYLSDGPNDKIQAVIDAGVCRRLVELLMHNDYKVVSPALRAVGNIV- 259
Query: 279 SSPNIKKEVLAAGALQPVIGLLSSCCSES-QREAALLLGQFAATDSDCKVHIVQRGAVRP 337
+ +I+ +V+ + + L S ES ++EA + A + ++
Sbjct: 260 TGDDIQTQVILNCSALQSLLHLLSSPKESIKKEACWTISNITAGNRAQIQTVIDANIFPA 319
Query: 338 LIEMLQSPDVQLREMSAFAL-----GRLAQDMHNQAGIAHNGGLVPLLKLLDSK 386
LI +LQ+ + + R+ +A+A+ G A+ + + L LL ++DSK
Sbjct: 320 LISILQTAEFRTRKEAAWAITNATSGGSAEQIKYLVELGCIKPLCDLLTVMDSK 373
>pdb|2JDQ|A Chain A, C-Terminal Domain Of Influenza A Virus Polymerase Pb2
Subunit In Complex With Human Importin Alpha5
pdb|2JDQ|B Chain B, C-Terminal Domain Of Influenza A Virus Polymerase Pb2
Subunit In Complex With Human Importin Alpha5
Length = 450
Score = 55.1 bits (131), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 57/227 (25%), Positives = 102/227 (44%), Gaps = 16/227 (7%)
Query: 147 PEHQQLIVDNGALSHLVNLLKRHMDSNCSRAVNSVIRRAADAITNLAHENSSIKTRVRME 206
P ++I G ++ V LKR NC+ S A +TN+A NS ++TR+ ++
Sbjct: 54 PPIDEVISTPGVVARFVEFLKRK--ENCTLQFES-----AWVLTNIASGNS-LQTRIVIQ 105
Query: 207 GG-IPPLVELL--EFTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSEDS 263
G +P +ELL EF D VQ A AL +A + ++ +++CN LP L+ + ++
Sbjct: 106 AGAVPIFIELLSSEFED--VQEQAVWALGNIAGDSTMCRDYVLDCNILPPLLQLFSKQNR 163
Query: 264 -AIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLSSCCSESQREAALLLGQFAATD 322
+ AV + NL + + L + LL ++ +A L +
Sbjct: 164 LTMTRNAVWALSNLCRGKSPPPEFAKVSPCLNVLSWLLFVSDTDVLADACWALSYLSDGP 223
Query: 323 SDCKVHIVQRGAVRPLIEMLQSPDVQLREMSAFALGRL--AQDMHNQ 367
+D ++ G R L+E+L D ++ + A+G + D+ Q
Sbjct: 224 NDKIQAVIDAGVCRRLVELLMHNDYKVVSPALRAVGNIVTGDDIQTQ 270
Score = 43.1 bits (100), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 38/168 (22%), Positives = 76/168 (45%), Gaps = 3/168 (1%)
Query: 256 LMLRSEDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLSSCCSESQREAALLL 315
+ R E+ + +E+ V+ N+ + + V+ AGA+ I LLSS + Q +A L
Sbjct: 72 FLKRKENCTLQFESAWVLTNIASGNSLQTRIVIQAGAVPIFIELLSSEFEDVQEQAVWAL 131
Query: 316 GQFAATDSDCKVHIVQRGAVRPLIEMLQSPD-VQLREMSAFALGRLAQDMHNQAGIAHNG 374
G A + C+ +++ + PL+++ + + + + +AL L + A
Sbjct: 132 GNIAGDSTMCRDYVLDCNILPPLLQLFSKQNRLTMTRNAVWALSNLCRGKSPPPEFAKVS 191
Query: 375 GLVPLLK-LLDSKNGSLQHNAAFALYGLADN-EDNVADFIRVGGVQKL 420
+ +L LL + + +A +AL L+D D + I G ++L
Sbjct: 192 PCLNVLSWLLFVSDTDVLADACWALSYLSDGPNDKIQAVIDAGVCRRL 239
Score = 40.4 bits (93), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 66/294 (22%), Positives = 130/294 (44%), Gaps = 27/294 (9%)
Query: 100 IVEGGAVPALVKHLQAPPTSEADRNLKPFEHEVEKGSAFALGLLAVKPEH-QQLIVDNGA 158
+++ GAVP ++ L +SE FE +V++ + +ALG +A + ++D
Sbjct: 103 VIQAGAVPIFIELL----SSE-------FE-DVQEQAVWALGNIAGDSTMCRDYVLDCNI 150
Query: 159 LSHLVNLLKRHMDSNCSRAVNSVIRRAADAITNLAHENSSIKTRVRMEGGIPPLVELLEF 218
L L+ L + +R ++ R A A++NL S ++ + L LL
Sbjct: 151 LPPLLQLFSKQ-----NRL--TMTRNAVWALSNLCRGKSPPPEFAKVSPCLNVLSWLLFV 203
Query: 219 TDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSEDSAIHYEAVGVIGNLVH 278
+DT V A AL L+ ++ +++ L+ +L D + A+ +GN+V
Sbjct: 204 SDTDVLADACWALSYLSDGPNDKIQAVIDAGVCRRLVELLMHNDYKVVSPALRAVGNIV- 262
Query: 279 SSPNIKKEVLAAGALQPVIGLLSSCCSES-QREAALLLGQFAATDSDCKVHIVQRGAVRP 337
+ +I+ +V+ + + L S ES ++EA + A + ++
Sbjct: 263 TGDDIQTQVILNCSALQSLLHLLSSPKESIKKEACWTISNITAGNRAQIQTVIDANIFPA 322
Query: 338 LIEMLQSPDVQLREMSAFAL-----GRLAQDMHNQAGIAHNGGLVPLLKLLDSK 386
LI +LQ+ + + R+ +A+A+ G A+ + + L LL ++DSK
Sbjct: 323 LISILQTAEFRTRKEAAWAITNATSGGSAEQIKYLVELGCIKPLCDLLTVMDSK 376
>pdb|1EE5|A Chain A, Yeast Karyopherin (Importin) Alpha In A Complex With A
Nucleoplasmin Nls Peptide
Length = 424
Score = 55.1 bits (131), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 40/149 (26%), Positives = 71/149 (47%), Gaps = 3/149 (2%)
Query: 212 LVELLEFTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSEDSAIHYEAVG 271
LVELL T VQ A A+ + ND ++ LP L L+L S I EA
Sbjct: 218 LVELLSHESTLVQTPALRAVGNIVTGNDLQTQVVINAGVLPALRLLLSSPKENIKKEACW 277
Query: 272 VIGNLVHSSPNIKKEVLAAGALQPVIGLLSSCCSESQREAALLLGQFAATD---SDCKVH 328
I N+ + + V+ A + P++ LL ++++EA + ++ D +
Sbjct: 278 TISNITAGNTEQIQAVIDANLIPPLVKLLEVAEDKTKKEACWAISNASSGGLQRPDIIRY 337
Query: 329 IVQRGAVRPLIEMLQSPDVQLREMSAFAL 357
+V +G ++PL ++L+ D ++ E++ AL
Sbjct: 338 LVSQGCIKPLCDLLEIADNRIIEVTLDAL 366
Score = 50.8 bits (120), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 64/307 (20%), Positives = 133/307 (43%), Gaps = 25/307 (8%)
Query: 131 EVEKGSAFALGLLAV-KPEHQQLIVDNGALSHLVNLLKRHMDSNCSRAVNSVIRRAADAI 189
EV++ + +ALG +A +++ ++ A+ ++ L + S +IR A +
Sbjct: 102 EVKEQAIWALGNVAGDSTDYRDYVLQCNAMEPILGLFNSNKPS--------LIRTATWTL 153
Query: 190 TNLAHENSSIKTRVRMEGGIPPLVELLEFTDTKVQRAAAGALRTLAFKNDENKNQIVECN 249
+NL + +P L +L+ DT+ A A+ L+ E +++
Sbjct: 154 SNLCRGKKPQPDWSVVSQALPTLAKLIYSMDTETLVDACWAISYLSDGPQEAIQAVIDVR 213
Query: 250 ALPTLILMLRSEDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLSSCCSESQR 309
L+ +L E + + A+ +GN+V + + V+ AG L + LLSS ++
Sbjct: 214 IPKRLVELLSHESTLVQTPALRAVGNIVTGNDLQTQVVINAGVLPALRLLLSSPKENIKK 273
Query: 310 EAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQSPDVQLREMSAFALGRLAQDMHNQAG 369
EA + A +++ ++ + PL+++L+ + + ++ + +A+ + +
Sbjct: 274 EACWTISNITAGNTEQIQAVIDANLIPPLVKLLEVAEDKTKKEACWAISNASSGGLQRPD 333
Query: 370 I----AHNGGLVPLLKLLDSKNGSLQHNAAFAL-----YGLADNE------DNVADFI-R 413
I G + PL LL+ + + AL G AD E + ADFI +
Sbjct: 334 IIRYLVSQGCIKPLCDLLEIADNRIIEVTLDALENILKMGEADKEARGLNINENADFIEK 393
Query: 414 VGGVQKL 420
GG++K+
Sbjct: 394 AGGMEKI 400
Score = 49.3 bits (116), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 44/219 (20%), Positives = 101/219 (46%), Gaps = 3/219 (1%)
Query: 185 AADAITNLAHENSSIKTRVRMEG-GIPPLVELLEFTDTKVQRAAAGALRTLAFKNDENKN 243
AA A+TN+A +S +T+V ++ +P ++LL +V+ A AL +A + + ++
Sbjct: 65 AAWALTNIAS-GTSAQTKVVVDADAVPLFIQLLYTGSVEVKEQAIWALGNVAGDSTDYRD 123
Query: 244 QIVECNALPTLILMLRSEDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLSSC 303
+++CNA+ ++ + S ++ A + NL + + AL + L+ S
Sbjct: 124 YVLQCNAMEPILGLFNSNKPSLIRTATWTLSNLCRGKKPQPDWSVVSQALPTLAKLIYSM 183
Query: 304 CSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQSPDVQLREMSAFALGRLAQD 363
+E+ +A + + + ++ + L+E+L ++ + A+G +
Sbjct: 184 DTETLVDACWAISYLSDGPQEAIQAVIDVRIPKRLVELLSHESTLVQTPALRAVGNIVTG 243
Query: 364 MHNQAGIAHNGGLVPLLK-LLDSKNGSLQHNAAFALYGL 401
Q + N G++P L+ LL S +++ A + + +
Sbjct: 244 NDLQTQVVINAGVLPALRLLLSSPKENIKKEACWTISNI 282
Score = 48.9 bits (115), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 65/295 (22%), Positives = 124/295 (42%), Gaps = 18/295 (6%)
Query: 207 GGIPPLVELL-EFTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSEDSAI 265
G +P LVE + E +Q AA AL +A +V+ +A+P I +L + +
Sbjct: 44 GVVPRLVEFMRENQPEMLQLEAAWALTNIASGTSAQTKVVVDADAVPLFIQLLYTGSVEV 103
Query: 266 HYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLSSCCSESQREAALLLGQFAATDSDC 325
+A+ +GN+ S + + VL A++P++GL +S R A L
Sbjct: 104 KEQAIWALGNVAGDSTDYRDYVLQCNAMEPILGLFNSNKPSLIRTATWTLSNLCRGKKPQ 163
Query: 326 KVHIVQRGAVRPLIEMLQSPDVQLREMSAFALGRLAQDMHNQAGIAHNGGLVP--LLKLL 383
V A+ L +++ S D + + +A+ L+ D +A A +P L++LL
Sbjct: 164 PDWSVVSQALPTLAKLIYSMDTETLVDACWAISYLS-DGPQEAIQAVIDVRIPKRLVELL 222
Query: 384 DSKNGSLQHNAAFALYGLADNEDNVADFIRVGGVQKLQDGEFIVQATKDCVAK------- 436
++ +Q A A+ + D + GV L ++ + K+ + K
Sbjct: 223 SHESTLVQTPALRAVGNIVTGNDLQTQVVINAGV--LPALRLLLSSPKENIKKEACWTIS 280
Query: 437 -----TLKRLEEKIHGRVLNHLLYLMRVAEKGVQRRVALALAHLCSPDDQRTIFI 486
++++ I ++ L+ L+ VAE ++ A+++ S QR I
Sbjct: 281 NITAGNTEQIQAVIDANLIPPLVKLLEVAEDKTKKEACWAISNASSGGLQRPDII 335
>pdb|1EE4|A Chain A, Crystal Structure Of Yeast Karyopherin (Importin) Alpha In
A Complex With A C-Myc Nls Peptide
pdb|1EE4|B Chain B, Crystal Structure Of Yeast Karyopherin (Importin) Alpha In
A Complex With A C-Myc Nls Peptide
Length = 423
Score = 55.1 bits (131), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 40/149 (26%), Positives = 71/149 (47%), Gaps = 3/149 (2%)
Query: 212 LVELLEFTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSEDSAIHYEAVG 271
LVELL T VQ A A+ + ND ++ LP L L+L S I EA
Sbjct: 218 LVELLSHESTLVQTPALRAVGNIVTGNDLQTQVVINAGVLPALRLLLSSPKENIKKEACW 277
Query: 272 VIGNLVHSSPNIKKEVLAAGALQPVIGLLSSCCSESQREAALLLGQFAATD---SDCKVH 328
I N+ + + V+ A + P++ LL ++++EA + ++ D +
Sbjct: 278 TISNITAGNTEQIQAVIDANLIPPLVKLLEVAEDKTKKEACWAISNASSGGLQRPDIIRY 337
Query: 329 IVQRGAVRPLIEMLQSPDVQLREMSAFAL 357
+V +G ++PL ++L+ D ++ E++ AL
Sbjct: 338 LVSQGCIKPLCDLLEIADNRIIEVTLDAL 366
Score = 50.8 bits (120), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 64/307 (20%), Positives = 133/307 (43%), Gaps = 25/307 (8%)
Query: 131 EVEKGSAFALGLLAV-KPEHQQLIVDNGALSHLVNLLKRHMDSNCSRAVNSVIRRAADAI 189
EV++ + +ALG +A +++ ++ A+ ++ L + S +IR A +
Sbjct: 102 EVKEQAIWALGNVAGDSTDYRDYVLQCNAMEPILGLFNSNKPS--------LIRTATWTL 153
Query: 190 TNLAHENSSIKTRVRMEGGIPPLVELLEFTDTKVQRAAAGALRTLAFKNDENKNQIVECN 249
+NL + +P L +L+ DT+ A A+ L+ E +++
Sbjct: 154 SNLCRGKKPQPDWSVVSQALPTLAKLIYSMDTETLVDACWAISYLSDGPQEAIQAVIDVR 213
Query: 250 ALPTLILMLRSEDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLSSCCSESQR 309
L+ +L E + + A+ +GN+V + + V+ AG L + LLSS ++
Sbjct: 214 IPKRLVELLSHESTLVQTPALRAVGNIVTGNDLQTQVVINAGVLPALRLLLSSPKENIKK 273
Query: 310 EAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQSPDVQLREMSAFALGRLAQDMHNQAG 369
EA + A +++ ++ + PL+++L+ + + ++ + +A+ + +
Sbjct: 274 EACWTISNITAGNTEQIQAVIDANLIPPLVKLLEVAEDKTKKEACWAISNASSGGLQRPD 333
Query: 370 I----AHNGGLVPLLKLLDSKNGSLQHNAAFAL-----YGLADNE------DNVADFI-R 413
I G + PL LL+ + + AL G AD E + ADFI +
Sbjct: 334 IIRYLVSQGCIKPLCDLLEIADNRIIEVTLDALENILKMGEADKEARGLNINENADFIEK 393
Query: 414 VGGVQKL 420
GG++K+
Sbjct: 394 AGGMEKI 400
Score = 49.3 bits (116), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 44/219 (20%), Positives = 101/219 (46%), Gaps = 3/219 (1%)
Query: 185 AADAITNLAHENSSIKTRVRMEG-GIPPLVELLEFTDTKVQRAAAGALRTLAFKNDENKN 243
AA A+TN+A +S +T+V ++ +P ++LL +V+ A AL +A + + ++
Sbjct: 65 AAWALTNIAS-GTSAQTKVVVDADAVPLFIQLLYTGSVEVKEQAIWALGNVAGDSTDYRD 123
Query: 244 QIVECNALPTLILMLRSEDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLSSC 303
+++CNA+ ++ + S ++ A + NL + + AL + L+ S
Sbjct: 124 YVLQCNAMEPILGLFNSNKPSLIRTATWTLSNLCRGKKPQPDWSVVSQALPTLAKLIYSM 183
Query: 304 CSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQSPDVQLREMSAFALGRLAQD 363
+E+ +A + + + ++ + L+E+L ++ + A+G +
Sbjct: 184 DTETLVDACWAISYLSDGPQEAIQAVIDVRIPKRLVELLSHESTLVQTPALRAVGNIVTG 243
Query: 364 MHNQAGIAHNGGLVPLLK-LLDSKNGSLQHNAAFALYGL 401
Q + N G++P L+ LL S +++ A + + +
Sbjct: 244 NDLQTQVVINAGVLPALRLLLSSPKENIKKEACWTISNI 282
Score = 48.9 bits (115), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 65/295 (22%), Positives = 124/295 (42%), Gaps = 18/295 (6%)
Query: 207 GGIPPLVELL-EFTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSEDSAI 265
G +P LVE + E +Q AA AL +A +V+ +A+P I +L + +
Sbjct: 44 GVVPRLVEFMRENQPEMLQLEAAWALTNIASGTSAQTKVVVDADAVPLFIQLLYTGSVEV 103
Query: 266 HYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLSSCCSESQREAALLLGQFAATDSDC 325
+A+ +GN+ S + + VL A++P++GL +S R A L
Sbjct: 104 KEQAIWALGNVAGDSTDYRDYVLQCNAMEPILGLFNSNKPSLIRTATWTLSNLCRGKKPQ 163
Query: 326 KVHIVQRGAVRPLIEMLQSPDVQLREMSAFALGRLAQDMHNQAGIAHNGGLVP--LLKLL 383
V A+ L +++ S D + + +A+ L+ D +A A +P L++LL
Sbjct: 164 PDWSVVSQALPTLAKLIYSMDTETLVDACWAISYLS-DGPQEAIQAVIDVRIPKRLVELL 222
Query: 384 DSKNGSLQHNAAFALYGLADNEDNVADFIRVGGVQKLQDGEFIVQATKDCVAK------- 436
++ +Q A A+ + D + GV L ++ + K+ + K
Sbjct: 223 SHESTLVQTPALRAVGNIVTGNDLQTQVVINAGV--LPALRLLLSSPKENIKKEACWTIS 280
Query: 437 -----TLKRLEEKIHGRVLNHLLYLMRVAEKGVQRRVALALAHLCSPDDQRTIFI 486
++++ I ++ L+ L+ VAE ++ A+++ S QR I
Sbjct: 281 NITAGNTEQIQAVIDANLIPPLVKLLEVAEDKTKKEACWAISNASSGGLQRPDII 335
>pdb|1XM9|A Chain A, Structure Of The Armadillo Repeat Domain Of Plakophilin 1
Length = 457
Score = 54.3 bits (129), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 42/110 (38%), Positives = 61/110 (55%), Gaps = 4/110 (3%)
Query: 189 ITNLAHENSSIKTRVRMEGGIPPLVELLEFTDTKVQRAAAGALRTLAFKNDENKNQIVEC 248
I + ++ S K +V GGI LV+LL + VQ+AAAGALR L F++ NK +
Sbjct: 26 IQHTCFQDESAKQQVYQLGGICKLVDLLRSPNQNVQQAAAGALRNLVFRSTTNKLETRRQ 85
Query: 249 NALPTLILMLRSEDSA-IHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVI 297
N + + +LR +A I + G++ NL SS + KE L A AL PV+
Sbjct: 86 NGIREAVSLLRRTGNAEIQKQLTGLLWNL--SSTDELKEELIADAL-PVL 132
Score = 44.7 bits (104), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 31/115 (26%), Positives = 54/115 (46%), Gaps = 1/115 (0%)
Query: 209 IPPLVELLEFTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSEDSAIHYE 268
IP V+ L D K Q A ++ F+++ K Q+ + + L+ +LRS + +
Sbjct: 4 IPKAVQYLSSQDEKYQAIGAYYIQHTCFQDESAKQQVYQLGGICKLVDLLRSPNQNVQQA 63
Query: 269 AVGVIGNLVHSSPNIKKEVLAAGALQPVIGLL-SSCCSESQREAALLLGQFAATD 322
A G + NLV S K E ++ + LL + +E Q++ LL ++TD
Sbjct: 64 AAGALRNLVFRSTTNKLETRRQNGIREAVSLLRRTGNAEIQKQLTGLLWNLSSTD 118
Score = 32.7 bits (73), Expect = 0.72, Method: Compositional matrix adjust.
Identities = 32/114 (28%), Positives = 49/114 (42%), Gaps = 4/114 (3%)
Query: 206 EGGIPPLVELLEFTDTKVQRAAAGALRTLA---FKNDENKNQIV-ECNALPTLILMLRSE 261
E G+P + LL+ ++ V R+ A L ++ + NQ+ E L T S
Sbjct: 330 EKGLPQIARLLQSGNSDVVRSGASLLSNMSRHPLLHRVMGNQVFPEVTRLLTSHTGNTSN 389
Query: 262 DSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLSSCCSESQREAALLL 315
I A + NL+ S P + K+ ++ L +I L S S EAA LL
Sbjct: 390 SEDILSSACYTVRNLMASQPQLAKQYFSSSMLNNIINLCRSSASPKAAEAARLL 443
>pdb|1WA5|B Chain B, Crystal Structure Of The Exportin Cse1p Complexed With Its
Cargo (Kap60p) And Rangtp
Length = 530
Score = 52.4 bits (124), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 64/307 (20%), Positives = 133/307 (43%), Gaps = 25/307 (8%)
Query: 131 EVEKGSAFALGLLAV-KPEHQQLIVDNGALSHLVNLLKRHMDSNCSRAVNSVIRRAADAI 189
EV++ + +ALG +A +++ ++ A+ ++ L + S +IR A +
Sbjct: 188 EVKEQAIWALGNVAGDSTDYRDYVLQCNAMEPILGLFNSNKPS--------LIRTATWTL 239
Query: 190 TNLAHENSSIKTRVRMEGGIPPLVELLEFTDTKVQRAAAGALRTLAFKNDENKNQIVECN 249
+NL + +P L +L+ DT+ A A+ L+ E +++
Sbjct: 240 SNLCRGKKPQPDWSVVSQALPTLAKLIYSMDTETLVDACWAISYLSDGPQEAIQAVIDVR 299
Query: 250 ALPTLILMLRSEDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLSSCCSESQR 309
L+ +L E + + A+ +GN+V + + V+ AG L + LLSS ++
Sbjct: 300 IPKRLVELLSHESTLVQTPALRAVGNIVTGNDLQTQVVINAGVLPALRLLLSSPKENIKK 359
Query: 310 EAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQSPDVQLREMSAFALGRLAQDMHNQAG 369
EA + A +++ ++ + PL+++L+ + + ++ + +A+ + +
Sbjct: 360 EACWTISNITAGNTEQIQAVIDANLIPPLVKLLEVAEYKTKKEACWAISNASSGGLQRPD 419
Query: 370 I----AHNGGLVPLLKLLDSKNGSLQHNAAFAL-----YGLADNE------DNVADFI-R 413
I G + PL LL+ + + AL G AD E + ADFI +
Sbjct: 420 IIRYLVSQGCIKPLCDLLEIADNRIIEVTLDALENILKMGEADKEARGLNINENADFIEK 479
Query: 414 VGGVQKL 420
GG++K+
Sbjct: 480 AGGMEKI 486
Score = 49.7 bits (117), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 42/200 (21%), Positives = 93/200 (46%), Gaps = 2/200 (1%)
Query: 185 AADAITNLAHENSSIKTRVRMEG-GIPPLVELLEFTDTKVQRAAAGALRTLAFKNDENKN 243
AA A+TN+A +S +T+V ++ +P ++LL +V+ A AL +A + + ++
Sbjct: 151 AAWALTNIAS-GTSAQTKVVVDADAVPLFIQLLYTGSVEVKEQAIWALGNVAGDSTDYRD 209
Query: 244 QIVECNALPTLILMLRSEDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLSSC 303
+++CNA+ ++ + S ++ A + NL + + AL + L+ S
Sbjct: 210 YVLQCNAMEPILGLFNSNKPSLIRTATWTLSNLCRGKKPQPDWSVVSQALPTLAKLIYSM 269
Query: 304 CSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQSPDVQLREMSAFALGRLAQD 363
+E+ +A + + + ++ + L+E+L ++ + A+G +
Sbjct: 270 DTETLVDACWAISYLSDGPQEAIQAVIDVRIPKRLVELLSHESTLVQTPALRAVGNIVTG 329
Query: 364 MHNQAGIAHNGGLVPLLKLL 383
Q + N G++P L+LL
Sbjct: 330 NDLQTQVVINAGVLPALRLL 349
Score = 49.3 bits (116), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 65/295 (22%), Positives = 124/295 (42%), Gaps = 18/295 (6%)
Query: 207 GGIPPLVELL-EFTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSEDSAI 265
G +P LVE + E +Q AA AL +A +V+ +A+P I +L + +
Sbjct: 130 GVVPRLVEFMRENQPEMLQLEAAWALTNIASGTSAQTKVVVDADAVPLFIQLLYTGSVEV 189
Query: 266 HYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLSSCCSESQREAALLLGQFAATDSDC 325
+A+ +GN+ S + + VL A++P++GL +S R A L
Sbjct: 190 KEQAIWALGNVAGDSTDYRDYVLQCNAMEPILGLFNSNKPSLIRTATWTLSNLCRGKKPQ 249
Query: 326 KVHIVQRGAVRPLIEMLQSPDVQLREMSAFALGRLAQDMHNQAGIAHNGGLVP--LLKLL 383
V A+ L +++ S D + + +A+ L+ D +A A +P L++LL
Sbjct: 250 PDWSVVSQALPTLAKLIYSMDTETLVDACWAISYLS-DGPQEAIQAVIDVRIPKRLVELL 308
Query: 384 DSKNGSLQHNAAFALYGLADNEDNVADFIRVGGVQKLQDGEFIVQATKDCVAK------- 436
++ +Q A A+ + D + GV L ++ + K+ + K
Sbjct: 309 SHESTLVQTPALRAVGNIVTGNDLQTQVVINAGV--LPALRLLLSSPKENIKKEACWTIS 366
Query: 437 -----TLKRLEEKIHGRVLNHLLYLMRVAEKGVQRRVALALAHLCSPDDQRTIFI 486
++++ I ++ L+ L+ VAE ++ A+++ S QR I
Sbjct: 367 NITAGNTEQIQAVIDANLIPPLVKLLEVAEYKTKKEACWAISNASSGGLQRPDII 421
>pdb|1BK6|A Chain A, Karyopherin Alpha (Yeast) + Sv40 T Antigen Nls
pdb|1BK6|B Chain B, Karyopherin Alpha (Yeast) + Sv40 T Antigen Nls
Length = 422
Score = 52.0 bits (123), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 64/307 (20%), Positives = 133/307 (43%), Gaps = 25/307 (8%)
Query: 131 EVEKGSAFALGLLAV-KPEHQQLIVDNGALSHLVNLLKRHMDSNCSRAVNSVIRRAADAI 189
EV++ + +ALG +A +++ ++ A+ ++ L + S +IR A +
Sbjct: 100 EVKEQAIWALGNVAGDSTDYRDYVLQCNAMEPILGLFNSNKPS--------LIRTATWTL 151
Query: 190 TNLAHENSSIKTRVRMEGGIPPLVELLEFTDTKVQRAAAGALRTLAFKNDENKNQIVECN 249
+NL + +P L +L+ DT+ A A+ L+ E +++
Sbjct: 152 SNLCRGKKPQPDWSVVSQALPTLAKLIYSMDTETLVDACWAISYLSDGPQEAIQAVIDVR 211
Query: 250 ALPTLILMLRSEDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLSSCCSESQR 309
L+ +L E + + A+ +GN+V + + V+ AG L + LLSS ++
Sbjct: 212 IPKRLVELLSHESTLVQTPALRAVGNIVTGNDLQTQVVINAGVLPALRLLLSSPKENIKK 271
Query: 310 EAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQSPDVQLREMSAFALGRLAQDMHNQAG 369
EA + A +++ ++ + PL+++L+ + + ++ + +A+ + +
Sbjct: 272 EACWTISNITAGNTEQIQAVIDANLIPPLVKLLEVAEYKTKKEACWAISNASSGGLQRPD 331
Query: 370 I----AHNGGLVPLLKLLDSKNGSLQHNAAFAL-----YGLADNE------DNVADFI-R 413
I G + PL LL+ + + AL G AD E + ADFI +
Sbjct: 332 IIRYLVSQGCIKPLCDLLEIADNRIIEVTLDALENIIKMGEADKEARGLNINENADFIEK 391
Query: 414 VGGVQKL 420
GG++K+
Sbjct: 392 AGGMEKI 398
Score = 49.3 bits (116), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 47/231 (20%), Positives = 106/231 (45%), Gaps = 4/231 (1%)
Query: 185 AADAITNLAHENSSIKTRVRMEG-GIPPLVELLEFTDTKVQRAAAGALRTLAFKNDENKN 243
AA A+TN+A +S +T+V ++ +P ++LL +V+ A AL +A + + ++
Sbjct: 63 AAWALTNIAS-GTSAQTKVVVDADAVPLFIQLLYTGSVEVKEQAIWALGNVAGDSTDYRD 121
Query: 244 QIVECNALPTLILMLRSEDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLSSC 303
+++CNA+ ++ + S ++ A + NL + + AL + L+ S
Sbjct: 122 YVLQCNAMEPILGLFNSNKPSLIRTATWTLSNLCRGKKPQPDWSVVSQALPTLAKLIYSM 181
Query: 304 CSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQSPDVQLREMSAFALGRLAQD 363
+E+ +A + + + ++ + L+E+L ++ + A+G +
Sbjct: 182 DTETLVDACWAISYLSDGPQEAIQAVIDVRIPKRLVELLSHESTLVQTPALRAVGNIVTG 241
Query: 364 MHNQAGIAHNGGLVPLLK-LLDSKNGSLQHNAAFALYGL-ADNEDNVADFI 412
Q + N G++P L+ LL S +++ A + + + A N + + I
Sbjct: 242 NDLQTQVVINAGVLPALRLLLSSPKENIKKEACWTISNITAGNTEQIQAVI 292
Score = 48.9 bits (115), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 65/295 (22%), Positives = 124/295 (42%), Gaps = 18/295 (6%)
Query: 207 GGIPPLVELL-EFTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSEDSAI 265
G +P LVE + E +Q AA AL +A +V+ +A+P I +L + +
Sbjct: 42 GVVPRLVEFMRENQPEMLQLEAAWALTNIASGTSAQTKVVVDADAVPLFIQLLYTGSVEV 101
Query: 266 HYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLSSCCSESQREAALLLGQFAATDSDC 325
+A+ +GN+ S + + VL A++P++GL +S R A L
Sbjct: 102 KEQAIWALGNVAGDSTDYRDYVLQCNAMEPILGLFNSNKPSLIRTATWTLSNLCRGKKPQ 161
Query: 326 KVHIVQRGAVRPLIEMLQSPDVQLREMSAFALGRLAQDMHNQAGIAHNGGLVP--LLKLL 383
V A+ L +++ S D + + +A+ L+ D +A A +P L++LL
Sbjct: 162 PDWSVVSQALPTLAKLIYSMDTETLVDACWAISYLS-DGPQEAIQAVIDVRIPKRLVELL 220
Query: 384 DSKNGSLQHNAAFALYGLADNEDNVADFIRVGGVQKLQDGEFIVQATKDCVAK------- 436
++ +Q A A+ + D + GV L ++ + K+ + K
Sbjct: 221 SHESTLVQTPALRAVGNIVTGNDLQTQVVINAGV--LPALRLLLSSPKENIKKEACWTIS 278
Query: 437 -----TLKRLEEKIHGRVLNHLLYLMRVAEKGVQRRVALALAHLCSPDDQRTIFI 486
++++ I ++ L+ L+ VAE ++ A+++ S QR I
Sbjct: 279 NITAGNTEQIQAVIDANLIPPLVKLLEVAEYKTKKEACWAISNASSGGLQRPDII 333
>pdb|4AP2|A Chain A, Crystal Structure Of The Human Klhl11-cul3 Complex At 2.8a
Resolution
pdb|4APF|A Chain A, Crystal Structure Of The Human Klhl11-cul3 Complex At 3.1a
Resolution
Length = 297
Score = 52.0 bits (123), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 29/111 (26%), Positives = 56/111 (50%), Gaps = 6/111 (5%)
Query: 558 GRRFYAHRICLLASSDAFRAMFDGGYREKDARDIEI------PNIRWEVFELMMRFIYTG 611
GR F AHR L A+++ F + G + E + +E+ P + E ++ ++YTG
Sbjct: 62 GREFRAHRSVLAAATEYFTPLLSGQFSESRSGRVEMRKWSSEPGPEPDTVEAVIEYMYTG 121
Query: 612 SVDVTLDIAQDLLRAADQYLLEGLKRLCEYTIAQDISLENVSSMYELSEAF 662
+ V+ ++L AD++LL LK C + + + L N +++ L+ +
Sbjct: 122 RIRVSTGSVHEVLELADRFLLIRLKEFCGEFLKKKLHLSNCVAIHSLAHMY 172
>pdb|1BK5|A Chain A, Karyopherin Alpha From Saccharomyces Cerevisiae
pdb|1BK5|B Chain B, Karyopherin Alpha From Saccharomyces Cerevisiae
Length = 422
Score = 52.0 bits (123), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 64/307 (20%), Positives = 133/307 (43%), Gaps = 25/307 (8%)
Query: 131 EVEKGSAFALGLLAV-KPEHQQLIVDNGALSHLVNLLKRHMDSNCSRAVNSVIRRAADAI 189
EV++ + +ALG +A +++ ++ A+ ++ L + S +IR A +
Sbjct: 100 EVKEQAIWALGNVAGDSTDYRDYVLQCNAMEPILGLFNSNKPS--------LIRTATWTL 151
Query: 190 TNLAHENSSIKTRVRMEGGIPPLVELLEFTDTKVQRAAAGALRTLAFKNDENKNQIVECN 249
+NL + +P L +L+ DT+ A A+ L+ E +++
Sbjct: 152 SNLCRGKKPQPDWSVVSQALPTLAKLIYSMDTETLVDACWAISYLSDGPQEAIQAVIDVR 211
Query: 250 ALPTLILMLRSEDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLSSCCSESQR 309
L+ +L E + + A+ +GN+V + + V+ AG L + LLSS ++
Sbjct: 212 IPKRLVELLSHESTLVQTPALRAVGNIVTGNDLQTQVVINAGVLPALRLLLSSPKENIKK 271
Query: 310 EAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQSPDVQLREMSAFALGRLAQDMHNQAG 369
EA + A +++ ++ + PL+++L+ + + ++ + +A+ + +
Sbjct: 272 EACWTISNITAGNTEQIQAVIDANLIPPLVKLLEVAEYKTKKEACWAISNASSGGLQRPD 331
Query: 370 I----AHNGGLVPLLKLLDSKNGSLQHNAAFAL-----YGLADNE------DNVADFI-R 413
I G + PL LL+ + + AL G AD E + ADFI +
Sbjct: 332 IIRYLVSQGCIKPLCDLLEIADNRIIEVTLDALENILKMGEADKEARGLNINENADFIEK 391
Query: 414 VGGVQKL 420
GG++K+
Sbjct: 392 AGGMEKI 398
Score = 49.3 bits (116), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 43/202 (21%), Positives = 94/202 (46%), Gaps = 2/202 (0%)
Query: 185 AADAITNLAHENSSIKTRVRMEG-GIPPLVELLEFTDTKVQRAAAGALRTLAFKNDENKN 243
AA A+TN+A +S +T+V ++ +P ++LL +V+ A AL +A + + ++
Sbjct: 63 AAWALTNIAS-GTSAQTKVVVDADAVPLFIQLLYTGSVEVKEQAIWALGNVAGDSTDYRD 121
Query: 244 QIVECNALPTLILMLRSEDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLSSC 303
+++CNA+ ++ + S ++ A + NL + + AL + L+ S
Sbjct: 122 YVLQCNAMEPILGLFNSNKPSLIRTATWTLSNLCRGKKPQPDWSVVSQALPTLAKLIYSM 181
Query: 304 CSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQSPDVQLREMSAFALGRLAQD 363
+E+ +A + + + ++ + L+E+L ++ + A+G +
Sbjct: 182 DTETLVDACWAISYLSDGPQEAIQAVIDVRIPKRLVELLSHESTLVQTPALRAVGNIVTG 241
Query: 364 MHNQAGIAHNGGLVPLLKLLDS 385
Q + N G++P L+LL S
Sbjct: 242 NDLQTQVVINAGVLPALRLLLS 263
Score = 48.5 bits (114), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 65/295 (22%), Positives = 124/295 (42%), Gaps = 18/295 (6%)
Query: 207 GGIPPLVELL-EFTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSEDSAI 265
G +P LVE + E +Q AA AL +A +V+ +A+P I +L + +
Sbjct: 42 GVVPRLVEFMRENQPEMLQLEAAWALTNIASGTSAQTKVVVDADAVPLFIQLLYTGSVEV 101
Query: 266 HYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLSSCCSESQREAALLLGQFAATDSDC 325
+A+ +GN+ S + + VL A++P++GL +S R A L
Sbjct: 102 KEQAIWALGNVAGDSTDYRDYVLQCNAMEPILGLFNSNKPSLIRTATWTLSNLCRGKKPQ 161
Query: 326 KVHIVQRGAVRPLIEMLQSPDVQLREMSAFALGRLAQDMHNQAGIAHNGGLVP--LLKLL 383
V A+ L +++ S D + + +A+ L+ D +A A +P L++LL
Sbjct: 162 PDWSVVSQALPTLAKLIYSMDTETLVDACWAISYLS-DGPQEAIQAVIDVRIPKRLVELL 220
Query: 384 DSKNGSLQHNAAFALYGLADNEDNVADFIRVGGVQKLQDGEFIVQATKDCVAK------- 436
++ +Q A A+ + D + GV L ++ + K+ + K
Sbjct: 221 SHESTLVQTPALRAVGNIVTGNDLQTQVVINAGV--LPALRLLLSSPKENIKKEACWTIS 278
Query: 437 -----TLKRLEEKIHGRVLNHLLYLMRVAEKGVQRRVALALAHLCSPDDQRTIFI 486
++++ I ++ L+ L+ VAE ++ A+++ S QR I
Sbjct: 279 NITAGNTEQIQAVIDANLIPPLVKLLEVAEYKTKKEACWAISNASSGGLQRPDII 333
>pdb|2NN2|A Chain A, Crystal Structure Of The Btb Domain From The LrfZBTB7
Transcriptional Regulator
pdb|2NN2|B Chain B, Crystal Structure Of The Btb Domain From The LrfZBTB7
Transcriptional Regulator
Length = 133
Score = 50.4 bits (119), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 30/91 (32%), Positives = 41/91 (45%)
Query: 549 LSDVTFLVEGRRFYAHRICLLASSDAFRAMFDGGYREKDARDIEIPNIRWEVFELMMRFI 608
L DV LVEGR F HR L A S F+ +F G EI + E +M F
Sbjct: 35 LCDVVILVEGREFPTHRSVLAACSQYFKKLFTSGAVVDQQNVYEIDFVSAEALTALMDFA 94
Query: 609 YTGSVDVTLDIAQDLLRAADQYLLEGLKRLC 639
YT ++ V+ D+L AA + + +C
Sbjct: 95 YTATLTVSTANVGDILSAARLLEIPAVSHVC 125
>pdb|3I3N|A Chain A, Crystal Structure Of The Btb-Back Domains Of Human Klhl11
pdb|3I3N|B Chain B, Crystal Structure Of The Btb-Back Domains Of Human Klhl11
Length = 279
Score = 50.4 bits (119), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 29/111 (26%), Positives = 54/111 (48%), Gaps = 6/111 (5%)
Query: 558 GRRFYAHRICLLASSDAFRAMFDGGYREKDARDIEI------PNIRWEVFELMMRFIYTG 611
GR F AHR L A+++ F + G + E + +E P + E ++ + YTG
Sbjct: 44 GREFRAHRSVLAAATEYFTPLLSGQFSESRSGRVEXRKWSSEPGPEPDTVEAVIEYXYTG 103
Query: 612 SVDVTLDIAQDLLRAADQYLLEGLKRLCEYTIAQDISLENVSSMYELSEAF 662
+ V+ ++L AD++LL LK C + + + L N +++ L+ +
Sbjct: 104 RIRVSTGSVHEVLELADRFLLIRLKEFCGEFLKKKLHLSNCVAIHSLAHXY 154
>pdb|2IF5|A Chain A, Structure Of The Poz Domain Of Human Lrf, A Master
Regulator Of Oncogenesis
Length = 120
Score = 50.4 bits (119), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 30/91 (32%), Positives = 41/91 (45%)
Query: 549 LSDVTFLVEGRRFYAHRICLLASSDAFRAMFDGGYREKDARDIEIPNIRWEVFELMMRFI 608
L DV LVEGR F HR L A S F+ +F G EI + E +M F
Sbjct: 25 LCDVVILVEGREFPTHRSVLAACSQYFKKLFTSGAVVDQQNVYEIDFVSAEALTALMDFA 84
Query: 609 YTGSVDVTLDIAQDLLRAADQYLLEGLKRLC 639
YT ++ V+ D+L AA + + +C
Sbjct: 85 YTATLTVSTANVGDILSAARLLEIPAVSHVC 115
>pdb|3TT9|A Chain A, Crystal Structure Of The Stable Degradation Fragment Of
Human Plakophilin 2 Isoform A (Pkp2a) C752r Variant
Length = 233
Score = 48.1 bits (113), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 39/115 (33%), Positives = 63/115 (54%), Gaps = 3/115 (2%)
Query: 180 SVIRRAADAITNLAHENSSIKTRVRMEGGIPPLVELLEFTDTKVQRAAAGALRTLAFKND 239
S I AA I + + S + RV GI L++LL+ + VQRA GALR L F+++
Sbjct: 25 SRISAAATFIQHECFQKSEARKRVNQLRGILKLLQLLKVQNEDVQRAVCGALRNLVFEDN 84
Query: 240 ENKNQIVECNALPTLILMLR-SEDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGAL 293
+NK ++ E N +P L+ +L+ + D + G++ NL SS + K ++ AL
Sbjct: 85 DNKLEVAELNGVPRLLQVLKQTRDLETKKQITGLLWNL--SSNDKLKNLMITEAL 137
>pdb|2Z6G|A Chain A, Crystal Structure Of A Full-Length Zebrafish Beta-Catenin
Length = 780
Score = 47.4 bits (111), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 75/311 (24%), Positives = 126/311 (40%), Gaps = 26/311 (8%)
Query: 74 EADRAAAKRATHVLAELAKNEEVVNWIVEGG-AVPALVKHLQAPPTSEADRNLKPFEHEV 132
+ D+ +A ++ +L+K E + I+ V A+V+ +Q E R H +
Sbjct: 161 DEDQVVVNKAAVMVHQLSKKEASRHAIMRSPQMVSAIVRTMQNTNDVETARCTSGTLHNL 220
Query: 133 EKGSAFALGLLAVKPEHQQLIVDNGALSHLVNLLKRHMDSNCSRAVNSVIRRAADAITNL 192
S GLLA I +G + LVN+L V+SV+ A + NL
Sbjct: 221 ---SHHREGLLA--------IFKSGGIPALVNML--------GSPVDSVLFHAITTLHNL 261
Query: 193 AHENSSIKTRVRMEGGIPPLVELLEFTDTKVQRAAAGALRTLAFKNDENKNQIVECNALP 252
K VR+ GG+ +V LL T+ K L+ LA+ N E+K I+
Sbjct: 262 LLHQEGAKMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQILAYGNQESKLIILASGGPQ 321
Query: 253 TLILMLRSED-SAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLSSCCSESQREA 311
L+ ++R+ + + V+ L S N K ++ AG +Q +GL SQR
Sbjct: 322 ALVNIMRTYTYEKLLWTTSRVLKVLSVCSSN-KPAIVEAGGMQ-ALGL--HLTDPSQRLV 377
Query: 312 ALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQSPDVQLREMSAFALGRLA-QDMHNQAGI 370
L G + L+++L S D+ + +A L L + N+ +
Sbjct: 378 QNCLWTLRNLSDAATKQEGMEGLLGTLVQLLGSDDINVVTCAAGILSNLTCNNYKNKMMV 437
Query: 371 AHNGGLVPLLK 381
GG+ L++
Sbjct: 438 CQVGGIEALVR 448
Score = 39.7 bits (91), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 97/378 (25%), Positives = 148/378 (39%), Gaps = 57/378 (15%)
Query: 61 AQVNVLNTTFSWLEADRAAAKRATHVLAELAKNEEVVNWIVEGGAVPALVKHLQAPPTSE 120
A VN++ T +++ E R VL+ + N+ IVE G + AL HL P
Sbjct: 322 ALVNIMRT-YTY-EKLLWTTSRVLKVLSVCSSNKPA---IVEAGGMQALGLHLTDPSQRL 376
Query: 121 ADRNLKPFEHEVEKGSAFALGLLAVKPEHQQLIVDNGALSHLVNLLKRHMDSNCSRAVNS 180
L + L A K E + G L LV LL S +N
Sbjct: 377 VQNCLWTLRN---------LSDAATKQEGME-----GLLGTLVQLLG-------SDDIN- 414
Query: 181 VIRRAADAITNLAHENSSIKTRVRMEGGIPPLVE-LLEFTDTK-VQRAAAGALRTLAFKN 238
V+ AA ++NL N K V GGI LV +L D + + A ALR L ++
Sbjct: 415 VVTCAAGILSNLTCNNYKNKMMVCQVGGIEALVRTVLRAGDREDITEPAICALRHLTSRH 474
Query: 239 DEN---KNQIVECNALPTLILMLRSEDSAIHYEA-VGVIGNLVHSSPNIKKEVLAAGALQ 294
+ +N + LP ++ +L +A VG+I NL N + GA+
Sbjct: 475 QDAEMAQNAVRLHYGLPVVVKLLHPPSHWPLIKATVGLIRNLALCPAN-HAPLREQGAIP 533
Query: 295 PVIGLLSSCCSESQREAAL-------------------LLGQFAATDSDCKVHIVQRG-- 333
++ LL ++QR ++ G D IV RG
Sbjct: 534 RLVQLLVRAHQDTQRRTSMGGTQQQFVEGVRMEEIVEACTGALHILARDIHNRIVIRGLN 593
Query: 334 AVRPLIEMLQSPDVQLREMSAFALGRLAQDMHNQAGIAHNGGLVPLLKLLDSKNGSLQHN 393
+ +++L SP ++ ++A L LAQD I G PL +LL S+N +
Sbjct: 594 TIPLFVQLLYSPIENIQRVAAGVLCELAQDKEAAEAIEAEGATAPLTELLHSRNEGVATY 653
Query: 394 AAFALYGLADNEDNVADF 411
AA L+ ++ ED D+
Sbjct: 654 AAAVLFRMS--EDKPQDY 669
>pdb|3LTM|A Chain A, Structure Of A New Family Of Artificial Alpha Helicoidal
Repeat Proteins (Alpha-Rep) Based On Thermostable
Heat-Like Repeats
pdb|3LTM|B Chain B, Structure Of A New Family Of Artificial Alpha Helicoidal
Repeat Proteins (Alpha-Rep) Based On Thermostable
Heat-Like Repeats
Length = 211
Score = 46.6 bits (109), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 48/176 (27%), Positives = 76/176 (43%), Gaps = 43/176 (24%)
Query: 223 VQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSEDSAIHYEAVGVIGNLVHSSPN 282
V+RAAA AL +I + A+ LI L+ ED+ + A +G +
Sbjct: 35 VRRAAAYAL-----------GKIGDERAVEPLIKALKDEDAWVRRAAADALGQIGDER-- 81
Query: 283 IKKEVLAAGALQPVIGLLSSCCSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEML 342
A++P+I L ++ AA+ LGQ I AV PLI+ L
Sbjct: 82 ---------AVEPLIKALKDEDGWVRQSAAVALGQ-----------IGDERAVEPLIKAL 121
Query: 343 QSPDVQLREMSAFALGRLAQDMHNQAGIAHNGGLVPLLKLLDSKNGSLQHNAAFAL 398
+ D +R +AFALG + + + PL+K L ++G ++ +AA AL
Sbjct: 122 KDEDWFVRIAAAFALGEIGDER----------AVEPLIKALKDEDGWVRQSAADAL 167
Score = 42.0 bits (97), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 43/155 (27%), Positives = 65/155 (41%), Gaps = 33/155 (21%)
Query: 206 EGGIPPLVELLEFTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSEDSAI 265
E + PL++ L+ D V+RAAA AL QI + A+ LI L+ ED +
Sbjct: 49 ERAVEPLIKALKDEDAWVRRAAADAL-----------GQIGDERAVEPLIKALKDEDGWV 97
Query: 266 HYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLSSCCSESQREAALLLGQFAATDSDC 325
A +G + A++P+I L + AA LG+
Sbjct: 98 RQSAAVALGQIGDER-----------AVEPLIKALKDEDWFVRIAAAFALGE-------- 138
Query: 326 KVHIVQRGAVRPLIEMLQSPDVQLREMSAFALGRL 360
I AV PLI+ L+ D +R+ +A ALG +
Sbjct: 139 ---IGDERAVEPLIKALKDEDGWVRQSAADALGEI 170
Score = 39.3 bits (90), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 33/113 (29%), Positives = 53/113 (46%), Gaps = 21/113 (18%)
Query: 292 ALQPVIGLLSSCCSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQSPDVQLRE 351
A++P+I L + +R AA LGQ I AV PLI+ L+ D +R+
Sbjct: 51 AVEPLIKALKDEDAWVRRAAADALGQ-----------IGDERAVEPLIKALKDEDGWVRQ 99
Query: 352 MSAFALGRLAQDMHNQAGIAHNGGLVPLLKLLDSKNGSLQHNAAFALYGLADN 404
+A ALG++ + + PL+K L ++ ++ AAFAL + D
Sbjct: 100 SAAVALGQIGDER----------AVEPLIKALKDEDWFVRIAAAFALGEIGDE 142
>pdb|3LTJ|A Chain A, Structure Of A New Family Of Artificial Alpha Helicoidal
Repeat Proteins (Alpha-Rep) Based On Thermostable
Heat-Like Repeats
Length = 201
Score = 46.2 bits (108), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 48/176 (27%), Positives = 76/176 (43%), Gaps = 43/176 (24%)
Query: 223 VQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSEDSAIHYEAVGVIGNLVHSSPN 282
V+RAAA AL +I + A+ LI L+ ED+ + A +G +
Sbjct: 30 VRRAAAYAL-----------GKIGDERAVEPLIKALKDEDAWVRRAAADALGQIGDER-- 76
Query: 283 IKKEVLAAGALQPVIGLLSSCCSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEML 342
A++P+I L ++ AA+ LGQ I AV PLI+ L
Sbjct: 77 ---------AVEPLIKALKDEDGWVRQSAAVALGQ-----------IGDERAVEPLIKAL 116
Query: 343 QSPDVQLREMSAFALGRLAQDMHNQAGIAHNGGLVPLLKLLDSKNGSLQHNAAFAL 398
+ D +R +AFALG + + + PL+K L ++G ++ +AA AL
Sbjct: 117 KDEDWFVRIAAAFALGEIGDERAVE----------PLIKALKDEDGWVRQSAADAL 162
Score = 41.6 bits (96), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 43/156 (27%), Positives = 65/156 (41%), Gaps = 33/156 (21%)
Query: 206 EGGIPPLVELLEFTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSEDSAI 265
E + PL++ L+ D V+RAAA AL QI + A+ LI L+ ED +
Sbjct: 44 ERAVEPLIKALKDEDAWVRRAAADAL-----------GQIGDERAVEPLIKALKDEDGWV 92
Query: 266 HYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLSSCCSESQREAALLLGQFAATDSDC 325
A +G + A++P+I L + AA LG+
Sbjct: 93 RQSAAVALGQIGDER-----------AVEPLIKALKDEDWFVRIAAAFALGE-------- 133
Query: 326 KVHIVQRGAVRPLIEMLQSPDVQLREMSAFALGRLA 361
I AV PLI+ L+ D +R+ +A ALG +
Sbjct: 134 ---IGDERAVEPLIKALKDEDGWVRQSAADALGEIG 166
Score = 38.9 bits (89), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 33/113 (29%), Positives = 53/113 (46%), Gaps = 21/113 (18%)
Query: 292 ALQPVIGLLSSCCSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQSPDVQLRE 351
A++P+I L + +R AA LGQ I AV PLI+ L+ D +R+
Sbjct: 46 AVEPLIKALKDEDAWVRRAAADALGQ-----------IGDERAVEPLIKALKDEDGWVRQ 94
Query: 352 MSAFALGRLAQDMHNQAGIAHNGGLVPLLKLLDSKNGSLQHNAAFALYGLADN 404
+A ALG++ + + PL+K L ++ ++ AAFAL + D
Sbjct: 95 SAAVALGQIGDERAVE----------PLIKALKDEDWFVRIAAAFALGEIGDE 137
>pdb|2Z6H|A Chain A, Crystal Structure Of Beta-Catenin Armadillo Repeat Region
And Its C-Terminal Domain
Length = 644
Score = 44.3 bits (103), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 84/349 (24%), Positives = 137/349 (39%), Gaps = 65/349 (18%)
Query: 74 EADRAAAKRATHVLAELAKNEEVVNWIVEGG-AVPALVKHLQAPPTSEADRNLKPFEHEV 132
+ D+ +A ++ +L+K E + I+ V A+V+ +Q E R H +
Sbjct: 25 DEDQVVVNKAAVMVHQLSKKEASRHAIMRSPQMVSAIVRTMQNTNDVETARCTAGTLHNL 84
Query: 133 EKGSAFALGLLAVKPEHQQLIVDNGALSHLVNLLKRHMDSNCSRAVNSVIRRAADAITNL 192
S GLLA I +G + LV +L V+SV+ A + NL
Sbjct: 85 ---SHHREGLLA--------IFKSGGIPALVKML--------GSPVDSVLFYAITTLHNL 125
Query: 193 AHENSSIKTRVRMEGGIPPLVELLEFTDTKVQRAAAGALRTLAFKNDENKNQIVECNALP 252
K VR+ GG+ +V LL T+ K L+ LA+ N E+K I+
Sbjct: 126 LLHQEGAKMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQILAYGNQESKLIILASGGPQ 185
Query: 253 TLILMLRSEDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLSSCCSESQREAA 312
L+ ++R+ YE L+ ++ + K +LS C S
Sbjct: 186 ALVNIMRTYT----YE------KLLWTTSRVLK-------------VLSVCSSN------ 216
Query: 313 LLLGQFAATDSDCKVHIVQRGAVRPLIEMLQSPDVQLREMSAFALGRLAQDMHNQAGIAH 372
K IV+ G ++ L L P +L + + L L+ Q G+
Sbjct: 217 -------------KPAIVEAGGMQALGLHLTDPSQRLVQNCLWTLRNLSDAATKQEGM-- 261
Query: 373 NGGLVPLLKLLDSKNGSLQHNAAFALYGL-ADNEDNVADFIRVGGVQKL 420
G L L++LL S + ++ AA L L +N N +VGG++ L
Sbjct: 262 EGLLGTLVQLLGSDDINVVTCAAGILSNLTCNNYKNKMMVCQVGGIEAL 310
Score = 41.2 bits (95), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 98/378 (25%), Positives = 148/378 (39%), Gaps = 57/378 (15%)
Query: 61 AQVNVLNTTFSWLEADRAAAKRATHVLAELAKNEEVVNWIVEGGAVPALVKHLQAPPTSE 120
A VN++ T +++ E R VL+ + N+ IVE G + AL HL P
Sbjct: 186 ALVNIMRT-YTY-EKLLWTTSRVLKVLSVCSSNKPA---IVEAGGMQALGLHLTDPSQRL 240
Query: 121 ADRNLKPFEHEVEKGSAFALGLLAVKPEHQQLIVDNGALSHLVNLLKRHMDSNCSRAVNS 180
L + L A K E + G L LV LL S +N
Sbjct: 241 VQNCLWTLRN---------LSDAATKQEGME-----GLLGTLVQLLG-------SDDIN- 278
Query: 181 VIRRAADAITNLAHENSSIKTRVRMEGGIPPLVE-LLEFTDTK-VQRAAAGALRTLAFKN 238
V+ AA ++NL N K V GGI LV +L D + + A ALR L ++
Sbjct: 279 VVTCAAGILSNLTCNNYKNKMMVCQVGGIEALVRTVLRAGDREDITEPAICALRHLTSRH 338
Query: 239 DEN---KNQIVECNALPTLILMLRSEDSAIHYEA-VGVIGNLVHSSPNIKKEVLAAGALQ 294
E +N + LP ++ +L +A VG+I NL N + GA+
Sbjct: 339 QEAEMAQNAVRLHYGLPVVVKLLHPPSHWPLIKATVGLIRNLALCPAN-HAPLREQGAIP 397
Query: 295 PVIGLLSSCCSESQREAAL-------------------LLGQFAATDSDCKVHIVQRG-- 333
++ LL ++QR ++ G D IV RG
Sbjct: 398 RLVQLLVRAHQDTQRRTSMGGTQQQFVEGVRMEEIVEGCTGALHILARDVHNRIVIRGLN 457
Query: 334 AVRPLIEMLQSPDVQLREMSAFALGRLAQDMHNQAGIAHNGGLVPLLKLLDSKNGSLQHN 393
+ +++L SP ++ ++A L LAQD I G PL +LL S+N +
Sbjct: 458 TIPLFVQLLYSPIENIQRVAAGVLCELAQDKEAAEAIEAEGATAPLTELLHSRNEGVATY 517
Query: 394 AAFALYGLADNEDNVADF 411
AA L+ ++ ED D+
Sbjct: 518 AAAVLFRMS--EDKPQDY 533
>pdb|3OUW|A Chain A, Structure Of Beta-Catenin With Lef-1
pdb|3OUX|A Chain A, Structure Of Beta-Catenin With Phosphorylated Lef-1
Length = 540
Score = 44.3 bits (103), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 84/347 (24%), Positives = 136/347 (39%), Gaps = 65/347 (18%)
Query: 76 DRAAAKRATHVLAELAKNEEVVNWIVEG-GAVPALVKHLQAPPTSEADRNLKPFEHEVEK 134
D+ +A ++ +L+K E + I+ V A+V+ +Q E R H +
Sbjct: 33 DQVVVNKAAVMVHQLSKKEASRHAIMRSPQMVSAIVRTMQNTNDVETARCTAGTLHNL-- 90
Query: 135 GSAFALGLLAVKPEHQQLIVDNGALSHLVNLLKRHMDSNCSRAVNSVIRRAADAITNLAH 194
S GLLA I +G + LV +L V+SV+ A + NL
Sbjct: 91 -SHHREGLLA--------IFKSGGIPALVKML--------GSPVDSVLFYAITTLHNLLL 133
Query: 195 ENSSIKTRVRMEGGIPPLVELLEFTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTL 254
K VR+ GG+ +V LL T+ K L+ LA+ N E+K I+ L
Sbjct: 134 HQEGAKMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQILAYGNQESKLIILASGGPQAL 193
Query: 255 ILMLRSEDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLSSCCSESQREAALL 314
+ ++R+ YE L+ ++ + K +LS C S
Sbjct: 194 VNIMRTYT----YE------KLLWTTSRVLK-------------VLSVCSSN-------- 222
Query: 315 LGQFAATDSDCKVHIVQRGAVRPLIEMLQSPDVQLREMSAFALGRLAQDMHNQAGIAHNG 374
K IV+ G ++ L L P +L + + L L+ Q G+ G
Sbjct: 223 -----------KPAIVEAGGMQALGLHLTDPSQRLVQNCLWTLRNLSDAATKQEGM--EG 269
Query: 375 GLVPLLKLLDSKNGSLQHNAAFALYGL-ADNEDNVADFIRVGGVQKL 420
L L++LL S + ++ AA L L +N N +VGG++ L
Sbjct: 270 LLGTLVQLLGSDDINVVTCAAGILSNLTCNNYKNKMMVCQVGGIEAL 316
Score = 40.8 bits (94), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 98/378 (25%), Positives = 148/378 (39%), Gaps = 57/378 (15%)
Query: 61 AQVNVLNTTFSWLEADRAAAKRATHVLAELAKNEEVVNWIVEGGAVPALVKHLQAPPTSE 120
A VN++ T +++ E R VL+ + N+ IVE G + AL HL P
Sbjct: 192 ALVNIMRT-YTY-EKLLWTTSRVLKVLSVCSSNKPA---IVEAGGMQALGLHLTDPSQRL 246
Query: 121 ADRNLKPFEHEVEKGSAFALGLLAVKPEHQQLIVDNGALSHLVNLLKRHMDSNCSRAVNS 180
L + L A K E + G L LV LL S +N
Sbjct: 247 VQNCLWTLRN---------LSDAATKQEGME-----GLLGTLVQLLG-------SDDIN- 284
Query: 181 VIRRAADAITNLAHENSSIKTRVRMEGGIPPLVE-LLEFTDTK-VQRAAAGALRTLAFKN 238
V+ AA ++NL N K V GGI LV +L D + + A ALR L ++
Sbjct: 285 VVTCAAGILSNLTCNNYKNKMMVCQVGGIEALVRTVLRAGDREDITEPAICALRHLTSRH 344
Query: 239 DEN---KNQIVECNALPTLILMLRSEDSAIHYEA-VGVIGNLVHSSPNIKKEVLAAGALQ 294
E +N + LP ++ +L +A VG+I NL N + GA+
Sbjct: 345 QEAEMAQNAVRLHYGLPVVVKLLHPPSHWPLIKATVGLIRNLALCPAN-HAPLREQGAIP 403
Query: 295 PVIGLLSSCCSESQREAAL-------------------LLGQFAATDSDCKVHIVQRG-- 333
++ LL ++QR ++ G D IV RG
Sbjct: 404 RLVQLLVRAHQDTQRRTSMGGTQQQFVEGVRMEEIVEGCTGALHILARDVHNRIVIRGLN 463
Query: 334 AVRPLIEMLQSPDVQLREMSAFALGRLAQDMHNQAGIAHNGGLVPLLKLLDSKNGSLQHN 393
+ +++L SP ++ ++A L LAQD I G PL +LL S+N +
Sbjct: 464 TIPLFVQLLYSPIENIQRVAAGVLCELAQDKEAAEAIEAEGATAPLTELLHSRNEGVATY 523
Query: 394 AAFALYGLADNEDNVADF 411
AA L+ ++ ED D+
Sbjct: 524 AAAVLFRMS--EDKPQDY 539
>pdb|1I7X|A Chain A, Beta-CateninE-Cadherin Complex
pdb|1I7X|C Chain C, Beta-CateninE-Cadherin Complex
pdb|1I7W|A Chain A, Beta-CateninPHOSPHORYLATED E-Cadherin Complex
pdb|1I7W|C Chain C, Beta-CateninPHOSPHORYLATED E-Cadherin Complex
pdb|1JPP|A Chain A, The Structure Of A Beta-Catenin Binding Repeat From
Adenomatous Polyposis Coli (Apc) In Complex With
Beta-Catenin
pdb|1JPP|B Chain B, The Structure Of A Beta-Catenin Binding Repeat From
Adenomatous Polyposis Coli (Apc) In Complex With
Beta-Catenin
pdb|1M1E|A Chain A, Beta-Catenin Armadillo Repeat Domain Bound To Icat
pdb|1V18|A Chain A, The Crystal Structure Of Beta-Catenin Armadillo Repeat
Complexed With A Phosphorylated Apc 20mer Repeat
Length = 538
Score = 44.3 bits (103), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 84/347 (24%), Positives = 136/347 (39%), Gaps = 65/347 (18%)
Query: 76 DRAAAKRATHVLAELAKNEEVVNWIVEG-GAVPALVKHLQAPPTSEADRNLKPFEHEVEK 134
D+ +A ++ +L+K E + I+ V A+V+ +Q E R H +
Sbjct: 31 DQVVVNKAAVMVHQLSKKEASRHAIMRSPQMVSAIVRTMQNTNDVETARCTAGTLHNL-- 88
Query: 135 GSAFALGLLAVKPEHQQLIVDNGALSHLVNLLKRHMDSNCSRAVNSVIRRAADAITNLAH 194
S GLLA I +G + LV +L V+SV+ A + NL
Sbjct: 89 -SHHREGLLA--------IFKSGGIPALVKML--------GSPVDSVLFYAITTLHNLLL 131
Query: 195 ENSSIKTRVRMEGGIPPLVELLEFTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTL 254
K VR+ GG+ +V LL T+ K L+ LA+ N E+K I+ L
Sbjct: 132 HQEGAKMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQILAYGNQESKLIILASGGPQAL 191
Query: 255 ILMLRSEDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLSSCCSESQREAALL 314
+ ++R+ YE L+ ++ + K +LS C S
Sbjct: 192 VNIMRTYT----YE------KLLWTTSRVLK-------------VLSVCSSN-------- 220
Query: 315 LGQFAATDSDCKVHIVQRGAVRPLIEMLQSPDVQLREMSAFALGRLAQDMHNQAGIAHNG 374
K IV+ G ++ L L P +L + + L L+ Q G+ G
Sbjct: 221 -----------KPAIVEAGGMQALGLHLTDPSQRLVQNCLWTLRNLSDAATKQEGM--EG 267
Query: 375 GLVPLLKLLDSKNGSLQHNAAFALYGL-ADNEDNVADFIRVGGVQKL 420
L L++LL S + ++ AA L L +N N +VGG++ L
Sbjct: 268 LLGTLVQLLGSDDINVVTCAAGILSNLTCNNYKNKMMVCQVGGIEAL 314
Score = 40.4 bits (93), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 98/378 (25%), Positives = 148/378 (39%), Gaps = 57/378 (15%)
Query: 61 AQVNVLNTTFSWLEADRAAAKRATHVLAELAKNEEVVNWIVEGGAVPALVKHLQAPPTSE 120
A VN++ T +++ E R VL+ + N+ IVE G + AL HL P
Sbjct: 190 ALVNIMRT-YTY-EKLLWTTSRVLKVLSVCSSNKPA---IVEAGGMQALGLHLTDPSQRL 244
Query: 121 ADRNLKPFEHEVEKGSAFALGLLAVKPEHQQLIVDNGALSHLVNLLKRHMDSNCSRAVNS 180
L + L A K E + G L LV LL S +N
Sbjct: 245 VQNCLWTLRN---------LSDAATKQEGME-----GLLGTLVQLLG-------SDDIN- 282
Query: 181 VIRRAADAITNLAHENSSIKTRVRMEGGIPPLVE-LLEFTDTK-VQRAAAGALRTLAFKN 238
V+ AA ++NL N K V GGI LV +L D + + A ALR L ++
Sbjct: 283 VVTCAAGILSNLTCNNYKNKMMVCQVGGIEALVRTVLRAGDREDITEPAICALRHLTSRH 342
Query: 239 DEN---KNQIVECNALPTLILMLRSEDSAIHYEA-VGVIGNLVHSSPNIKKEVLAAGALQ 294
E +N + LP ++ +L +A VG+I NL N + GA+
Sbjct: 343 QEAEMAQNAVRLHYGLPVVVKLLHPPSHWPLIKATVGLIRNLALCPAN-HAPLREQGAIP 401
Query: 295 PVIGLLSSCCSESQREAAL-------------------LLGQFAATDSDCKVHIVQRG-- 333
++ LL ++QR ++ G D IV RG
Sbjct: 402 RLVQLLVRAHQDTQRRTSMGGTQQQFVEGVRMEEIVEGCTGALHILARDVHNRIVIRGLN 461
Query: 334 AVRPLIEMLQSPDVQLREMSAFALGRLAQDMHNQAGIAHNGGLVPLLKLLDSKNGSLQHN 393
+ +++L SP ++ ++A L LAQD I G PL +LL S+N +
Sbjct: 462 TIPLFVQLLYSPIENIQRVAAGVLCELAQDKEAAEAIEAEGATAPLTELLHSRNEGVATY 521
Query: 394 AAFALYGLADNEDNVADF 411
AA L+ ++ ED D+
Sbjct: 522 AAAVLFRMS--EDKPQDY 537
>pdb|2GL7|A Chain A, Crystal Structure Of A Beta-CateninBCL9TCF4 COMPLEX
pdb|2GL7|D Chain D, Crystal Structure Of A Beta-CateninBCL9TCF4 COMPLEX
Length = 550
Score = 44.3 bits (103), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 84/347 (24%), Positives = 136/347 (39%), Gaps = 65/347 (18%)
Query: 76 DRAAAKRATHVLAELAKNEEVVNWIVEG-GAVPALVKHLQAPPTSEADRNLKPFEHEVEK 134
D+ +A ++ +L+K E + I+ V A+V+ +Q E R H +
Sbjct: 28 DQVVVNKAAVMVHQLSKKEASRHAIMRSPQMVSAIVRTMQNTNDVETARCTAGTLHNL-- 85
Query: 135 GSAFALGLLAVKPEHQQLIVDNGALSHLVNLLKRHMDSNCSRAVNSVIRRAADAITNLAH 194
S GLLA I +G + LV +L V+SV+ A + NL
Sbjct: 86 -SHHREGLLA--------IFKSGGIPALVKML--------GSPVDSVLFYAITTLHNLLL 128
Query: 195 ENSSIKTRVRMEGGIPPLVELLEFTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTL 254
K VR+ GG+ +V LL T+ K L+ LA+ N E+K I+ L
Sbjct: 129 HQEGAKMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQILAYGNQESKLIILASGGPQAL 188
Query: 255 ILMLRSEDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLSSCCSESQREAALL 314
+ ++R+ YE L+ ++ + K +LS C S
Sbjct: 189 VNIMRTYT----YE------KLLWTTSRVLK-------------VLSVCSSN-------- 217
Query: 315 LGQFAATDSDCKVHIVQRGAVRPLIEMLQSPDVQLREMSAFALGRLAQDMHNQAGIAHNG 374
K IV+ G ++ L L P +L + + L L+ Q G+ G
Sbjct: 218 -----------KPAIVEAGGMQALGLHLTDPSQRLVQNCLWTLRNLSDAATKQEGM--EG 264
Query: 375 GLVPLLKLLDSKNGSLQHNAAFALYGL-ADNEDNVADFIRVGGVQKL 420
L L++LL S + ++ AA L L +N N +VGG++ L
Sbjct: 265 LLGTLVQLLGSDDINVVTCAAGILSNLTCNNYKNKMMVCQVGGIEAL 311
Score = 40.8 bits (94), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 98/378 (25%), Positives = 148/378 (39%), Gaps = 57/378 (15%)
Query: 61 AQVNVLNTTFSWLEADRAAAKRATHVLAELAKNEEVVNWIVEGGAVPALVKHLQAPPTSE 120
A VN++ T +++ E R VL+ + N+ IVE G + AL HL P
Sbjct: 187 ALVNIMRT-YTY-EKLLWTTSRVLKVLSVCSSNKPA---IVEAGGMQALGLHLTDPSQRL 241
Query: 121 ADRNLKPFEHEVEKGSAFALGLLAVKPEHQQLIVDNGALSHLVNLLKRHMDSNCSRAVNS 180
L + L A K E + G L LV LL S +N
Sbjct: 242 VQNCLWTLRN---------LSDAATKQEGME-----GLLGTLVQLLG-------SDDIN- 279
Query: 181 VIRRAADAITNLAHENSSIKTRVRMEGGIPPLVE-LLEFTDTK-VQRAAAGALRTLAFKN 238
V+ AA ++NL N K V GGI LV +L D + + A ALR L ++
Sbjct: 280 VVTCAAGILSNLTCNNYKNKMMVCQVGGIEALVRTVLRAGDREDITEPAICALRHLTSRH 339
Query: 239 DEN---KNQIVECNALPTLILMLRSEDSAIHYEA-VGVIGNLVHSSPNIKKEVLAAGALQ 294
E +N + LP ++ +L +A VG+I NL N + GA+
Sbjct: 340 QEAEMAQNAVRLHYGLPVVVKLLHPPSHWPLIKATVGLIRNLALCPAN-HAPLREQGAIP 398
Query: 295 PVIGLLSSCCSESQREAAL-------------------LLGQFAATDSDCKVHIVQRG-- 333
++ LL ++QR ++ G D IV RG
Sbjct: 399 RLVQLLVRAHQDTQRRTSMGGTQQQFVEGVRMEEIVEGCTGALHILARDVHNRIVIRGLN 458
Query: 334 AVRPLIEMLQSPDVQLREMSAFALGRLAQDMHNQAGIAHNGGLVPLLKLLDSKNGSLQHN 393
+ +++L SP ++ ++A L LAQD I G PL +LL S+N +
Sbjct: 459 TIPLFVQLLYSPIENIQRVAAGVLCELAQDKEAAEAIEAEGATAPLTELLHSRNEGVATY 518
Query: 394 AAFALYGLADNEDNVADF 411
AA L+ ++ ED D+
Sbjct: 519 AAAVLFRMS--EDKPQDY 534
>pdb|3TX7|A Chain A, Crystal Structure Of Lrh-1BETA-Catenin Complex
Length = 527
Score = 44.3 bits (103), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 84/347 (24%), Positives = 136/347 (39%), Gaps = 65/347 (18%)
Query: 76 DRAAAKRATHVLAELAKNEEVVNWIVEG-GAVPALVKHLQAPPTSEADRNLKPFEHEVEK 134
D+ +A ++ +L+K E + I+ V A+V+ +Q E R H +
Sbjct: 28 DQVVVNKAAVMVHQLSKKEASRHAIMRSPQMVSAIVRTMQNTNDVETARCTAGTLHNL-- 85
Query: 135 GSAFALGLLAVKPEHQQLIVDNGALSHLVNLLKRHMDSNCSRAVNSVIRRAADAITNLAH 194
S GLLA I +G + LV +L V+SV+ A + NL
Sbjct: 86 -SHHREGLLA--------IFKSGGIPALVKML--------GSPVDSVLFYAITTLHNLLL 128
Query: 195 ENSSIKTRVRMEGGIPPLVELLEFTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTL 254
K VR+ GG+ +V LL T+ K L+ LA+ N E+K I+ L
Sbjct: 129 HQEGAKMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQILAYGNQESKLIILASGGPQAL 188
Query: 255 ILMLRSEDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLSSCCSESQREAALL 314
+ ++R+ YE L+ ++ + K +LS C S
Sbjct: 189 VNIMRTYT----YE------KLLWTTSRVLK-------------VLSVCSSN-------- 217
Query: 315 LGQFAATDSDCKVHIVQRGAVRPLIEMLQSPDVQLREMSAFALGRLAQDMHNQAGIAHNG 374
K IV+ G ++ L L P +L + + L L+ Q G+ G
Sbjct: 218 -----------KPAIVEAGGMQALGLHLTDPSQRLVQNCLWTLRNLSDAATKQEGM--EG 264
Query: 375 GLVPLLKLLDSKNGSLQHNAAFALYGL-ADNEDNVADFIRVGGVQKL 420
L L++LL S + ++ AA L L +N N +VGG++ L
Sbjct: 265 LLGTLVQLLGSDDINVVTCAAGILSNLTCNNYKNKMMVCQVGGIEAL 311
Score = 38.5 bits (88), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 95/369 (25%), Positives = 144/369 (39%), Gaps = 55/369 (14%)
Query: 61 AQVNVLNTTFSWLEADRAAAKRATHVLAELAKNEEVVNWIVEGGAVPALVKHLQAPPTSE 120
A VN++ T +++ E R VL+ + N+ IVE G + AL HL P
Sbjct: 187 ALVNIMRT-YTY-EKLLWTTSRVLKVLSVCSSNKPA---IVEAGGMQALGLHLTDPSQRL 241
Query: 121 ADRNLKPFEHEVEKGSAFALGLLAVKPEHQQLIVDNGALSHLVNLLKRHMDSNCSRAVNS 180
L + L A K E + G L LV LL S +N
Sbjct: 242 VQNCLWTLRN---------LSDAATKQEGME-----GLLGTLVQLLG-------SDDIN- 279
Query: 181 VIRRAADAITNLAHENSSIKTRVRMEGGIPPLVE-LLEFTDTK-VQRAAAGALRTLAFKN 238
V+ AA ++NL N K V GGI LV +L D + + A ALR L ++
Sbjct: 280 VVTCAAGILSNLTCNNYKNKMMVCQVGGIEALVRTVLRAGDREDITEPAICALRHLTSRH 339
Query: 239 DEN---KNQIVECNALPTLILMLRSEDSAIHYEA-VGVIGNLVHSSPNIKKEVLAAGALQ 294
E +N + LP ++ +L +A VG+I NL N + GA+
Sbjct: 340 QEAEMAQNAVRLHYGLPVVVKLLHPPSHWPLIKATVGLIRNLALCPAN-HAPLREQGAIP 398
Query: 295 PVIGLLSSCCSESQREAAL-------------------LLGQFAATDSDCKVHIVQRG-- 333
++ LL ++QR ++ G D IV RG
Sbjct: 399 RLVQLLVRAHQDTQRRTSMGGTQQQFVEGVRMEEIVEGCTGALHILARDVHNRIVIRGLN 458
Query: 334 AVRPLIEMLQSPDVQLREMSAFALGRLAQDMHNQAGIAHNGGLVPLLKLLDSKNGSLQHN 393
+ +++L SP ++ ++A L LAQD I G PL +LL S+N +
Sbjct: 459 TIPLFVQLLYSPIENIQRVAAGVLCELAQDKEAAEAIEAEGATAPLTELLHSRNEGVATY 518
Query: 394 AAFALYGLA 402
AA L+ ++
Sbjct: 519 AAAVLFRMS 527
>pdb|1JDH|A Chain A, Crystal Structure Of Beta-Catenin And Htcf-4
Length = 529
Score = 44.3 bits (103), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 84/347 (24%), Positives = 136/347 (39%), Gaps = 65/347 (18%)
Query: 76 DRAAAKRATHVLAELAKNEEVVNWIVEG-GAVPALVKHLQAPPTSEADRNLKPFEHEVEK 134
D+ +A ++ +L+K E + I+ V A+V+ +Q E R H +
Sbjct: 30 DQVVVNKAAVMVHQLSKKEASRHAIMRSPQMVSAIVRTMQNTNDVETARCTAGTLHNL-- 87
Query: 135 GSAFALGLLAVKPEHQQLIVDNGALSHLVNLLKRHMDSNCSRAVNSVIRRAADAITNLAH 194
S GLLA I +G + LV +L V+SV+ A + NL
Sbjct: 88 -SHHREGLLA--------IFKSGGIPALVKML--------GSPVDSVLFYAITTLHNLLL 130
Query: 195 ENSSIKTRVRMEGGIPPLVELLEFTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTL 254
K VR+ GG+ +V LL T+ K L+ LA+ N E+K I+ L
Sbjct: 131 HQEGAKMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQILAYGNQESKLIILASGGPQAL 190
Query: 255 ILMLRSEDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLSSCCSESQREAALL 314
+ ++R+ YE L+ ++ + K +LS C S
Sbjct: 191 VNIMRTYT----YE------KLLWTTSRVLK-------------VLSVCSSN-------- 219
Query: 315 LGQFAATDSDCKVHIVQRGAVRPLIEMLQSPDVQLREMSAFALGRLAQDMHNQAGIAHNG 374
K IV+ G ++ L L P +L + + L L+ Q G+ G
Sbjct: 220 -----------KPAIVEAGGMQALGLHLTDPSQRLVQNCLWTLRNLSDAATKQEGM--EG 266
Query: 375 GLVPLLKLLDSKNGSLQHNAAFALYGL-ADNEDNVADFIRVGGVQKL 420
L L++LL S + ++ AA L L +N N +VGG++ L
Sbjct: 267 LLGTLVQLLGSDDINVVTCAAGILSNLTCNNYKNKMMVCQVGGIEAL 313
Score = 38.5 bits (88), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 95/366 (25%), Positives = 142/366 (38%), Gaps = 55/366 (15%)
Query: 61 AQVNVLNTTFSWLEADRAAAKRATHVLAELAKNEEVVNWIVEGGAVPALVKHLQAPPTSE 120
A VN++ T +++ E R VL+ + N+ IVE G + AL HL P
Sbjct: 189 ALVNIMRT-YTY-EKLLWTTSRVLKVLSVCSSNKPA---IVEAGGMQALGLHLTDPSQRL 243
Query: 121 ADRNLKPFEHEVEKGSAFALGLLAVKPEHQQLIVDNGALSHLVNLLKRHMDSNCSRAVNS 180
L + L A K E + G L LV LL S +N
Sbjct: 244 VQNCLWTLRN---------LSDAATKQEGME-----GLLGTLVQLLG-------SDDIN- 281
Query: 181 VIRRAADAITNLAHENSSIKTRVRMEGGIPPLVE-LLEFTDTK-VQRAAAGALRTLAFKN 238
V+ AA ++NL N K V GGI LV +L D + + A ALR L ++
Sbjct: 282 VVTCAAGILSNLTCNNYKNKMMVCQVGGIEALVRTVLRAGDREDITEPAICALRHLTSRH 341
Query: 239 DEN---KNQIVECNALPTLILMLRSEDSAIHYEA-VGVIGNLVHSSPNIKKEVLAAGALQ 294
E +N + LP ++ +L +A VG+I NL N + GA+
Sbjct: 342 QEAEMAQNAVRLHYGLPVVVKLLHPPSHWPLIKATVGLIRNLALCPAN-HAPLREQGAIP 400
Query: 295 PVIGLLSSCCSESQREAAL-------------------LLGQFAATDSDCKVHIVQRG-- 333
++ LL ++QR ++ G D IV RG
Sbjct: 401 RLVQLLVRAHQDTQRRTSMGGTQQQFVEGVRMEEIVEGCTGALHILARDVHNRIVIRGLN 460
Query: 334 AVRPLIEMLQSPDVQLREMSAFALGRLAQDMHNQAGIAHNGGLVPLLKLLDSKNGSLQHN 393
+ +++L SP ++ ++A L LAQD I G PL +LL S+N +
Sbjct: 461 TIPLFVQLLYSPIENIQRVAAGVLCELAQDKEAAEAIEAEGATAPLTELLHSRNEGVATY 520
Query: 394 AAFALY 399
AA L+
Sbjct: 521 AAAVLF 526
>pdb|1T08|A Chain A, Crystal Structure Of Beta-CateninICAT HELICAL
DomainUNPHOSPHORYLATED APC R3
Length = 519
Score = 44.3 bits (103), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 84/347 (24%), Positives = 136/347 (39%), Gaps = 65/347 (18%)
Query: 76 DRAAAKRATHVLAELAKNEEVVNWIVEG-GAVPALVKHLQAPPTSEADRNLKPFEHEVEK 134
D+ +A ++ +L+K E + I+ V A+V+ +Q E R H +
Sbjct: 19 DQVVVNKAAVMVHQLSKKEASRHAIMRSPQMVSAIVRTMQNTNDVETARCTAGTLHNL-- 76
Query: 135 GSAFALGLLAVKPEHQQLIVDNGALSHLVNLLKRHMDSNCSRAVNSVIRRAADAITNLAH 194
S GLLA I +G + LV +L V+SV+ A + NL
Sbjct: 77 -SHHREGLLA--------IFKSGGIPALVKML--------GSPVDSVLFYAITTLHNLLL 119
Query: 195 ENSSIKTRVRMEGGIPPLVELLEFTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTL 254
K VR+ GG+ +V LL T+ K L+ LA+ N E+K I+ L
Sbjct: 120 HQEGAKMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQILAYGNQESKLIILASGGPQAL 179
Query: 255 ILMLRSEDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLSSCCSESQREAALL 314
+ ++R+ YE L+ ++ + K +LS C S
Sbjct: 180 VNIMRTYT----YE------KLLWTTSRVLK-------------VLSVCSSN-------- 208
Query: 315 LGQFAATDSDCKVHIVQRGAVRPLIEMLQSPDVQLREMSAFALGRLAQDMHNQAGIAHNG 374
K IV+ G ++ L L P +L + + L L+ Q G+ G
Sbjct: 209 -----------KPAIVEAGGMQALGLHLTDPSQRLVQNCLWTLRNLSDAATKQEGM--EG 255
Query: 375 GLVPLLKLLDSKNGSLQHNAAFALYGL-ADNEDNVADFIRVGGVQKL 420
L L++LL S + ++ AA L L +N N +VGG++ L
Sbjct: 256 LLGTLVQLLGSDDINVVTCAAGILSNLTCNNYKNKMMVCQVGGIEAL 302
Score = 38.9 bits (89), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 95/370 (25%), Positives = 145/370 (39%), Gaps = 55/370 (14%)
Query: 61 AQVNVLNTTFSWLEADRAAAKRATHVLAELAKNEEVVNWIVEGGAVPALVKHLQAPPTSE 120
A VN++ T +++ E R VL+ + N+ IVE G + AL HL P
Sbjct: 178 ALVNIMRT-YTY-EKLLWTTSRVLKVLSVCSSNKPA---IVEAGGMQALGLHLTDPSQRL 232
Query: 121 ADRNLKPFEHEVEKGSAFALGLLAVKPEHQQLIVDNGALSHLVNLLKRHMDSNCSRAVNS 180
L + L A K E + G L LV LL S +N
Sbjct: 233 VQNCLWTLRN---------LSDAATKQEGME-----GLLGTLVQLLG-------SDDIN- 270
Query: 181 VIRRAADAITNLAHENSSIKTRVRMEGGIPPLVE-LLEFTDTK-VQRAAAGALRTLAFKN 238
V+ AA ++NL N K V GGI LV +L D + + A ALR L ++
Sbjct: 271 VVTCAAGILSNLTCNNYKNKMMVCQVGGIEALVRTVLRAGDREDITEPAICALRHLTSRH 330
Query: 239 DEN---KNQIVECNALPTLILMLRSEDSAIHYEA-VGVIGNLVHSSPNIKKEVLAAGALQ 294
E +N + LP ++ +L +A VG+I NL N + GA+
Sbjct: 331 QEAEMAQNAVRLHYGLPVVVKLLHPPSHWPLIKATVGLIRNLALCPAN-HAPLREQGAIP 389
Query: 295 PVIGLLSSCCSESQREAAL-------------------LLGQFAATDSDCKVHIVQRG-- 333
++ LL ++QR ++ G D IV RG
Sbjct: 390 RLVQLLVRAHQDTQRRTSMGGTQQQFVEGVRMEEIVEGCTGALHILARDVHNRIVIRGLN 449
Query: 334 AVRPLIEMLQSPDVQLREMSAFALGRLAQDMHNQAGIAHNGGLVPLLKLLDSKNGSLQHN 393
+ +++L SP ++ ++A L LAQD I G PL +LL S+N +
Sbjct: 450 TIPLFVQLLYSPIENIQRVAAGVLCELAQDKEAAEAIEAEGATAPLTELLHSRNEGVATY 509
Query: 394 AAFALYGLAD 403
AA L+ +++
Sbjct: 510 AAAVLFRMSE 519
>pdb|1JPW|A Chain A, Crystal Structure Of A Human Tcf-4 BETA-Catenin Complex
pdb|1JPW|B Chain B, Crystal Structure Of A Human Tcf-4 BETA-Catenin Complex
pdb|1JPW|C Chain C, Crystal Structure Of A Human Tcf-4 BETA-Catenin Complex
Length = 540
Score = 44.3 bits (103), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 84/347 (24%), Positives = 136/347 (39%), Gaps = 65/347 (18%)
Query: 76 DRAAAKRATHVLAELAKNEEVVNWIVEG-GAVPALVKHLQAPPTSEADRNLKPFEHEVEK 134
D+ +A ++ +L+K E + I+ V A+V+ +Q E R H +
Sbjct: 34 DQVVVNKAAVMVHQLSKKEASRHAIMRSPQMVSAIVRTMQNTNDVETARCTAGTLHNL-- 91
Query: 135 GSAFALGLLAVKPEHQQLIVDNGALSHLVNLLKRHMDSNCSRAVNSVIRRAADAITNLAH 194
S GLLA I +G + LV +L V+SV+ A + NL
Sbjct: 92 -SHHREGLLA--------IFKSGGIPALVKML--------GSPVDSVLFYAITTLHNLLL 134
Query: 195 ENSSIKTRVRMEGGIPPLVELLEFTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTL 254
K VR+ GG+ +V LL T+ K L+ LA+ N E+K I+ L
Sbjct: 135 HQEGAKMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQILAYGNQESKLIILASGGPQAL 194
Query: 255 ILMLRSEDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLSSCCSESQREAALL 314
+ ++R+ YE L+ ++ + K +LS C S
Sbjct: 195 VNIMRTYT----YE------KLLWTTSRVLK-------------VLSVCSSN-------- 223
Query: 315 LGQFAATDSDCKVHIVQRGAVRPLIEMLQSPDVQLREMSAFALGRLAQDMHNQAGIAHNG 374
K IV+ G ++ L L P +L + + L L+ Q G+ G
Sbjct: 224 -----------KPAIVEAGGMQALGLHLTDPSQRLVQNCLWTLRNLSDAATKQEGM--EG 270
Query: 375 GLVPLLKLLDSKNGSLQHNAAFALYGL-ADNEDNVADFIRVGGVQKL 420
L L++LL S + ++ AA L L +N N +VGG++ L
Sbjct: 271 LLGTLVQLLGSDDINVVTCAAGILSNLTCNNYKNKMMVCQVGGIEAL 317
Score = 40.4 bits (93), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 98/378 (25%), Positives = 148/378 (39%), Gaps = 57/378 (15%)
Query: 61 AQVNVLNTTFSWLEADRAAAKRATHVLAELAKNEEVVNWIVEGGAVPALVKHLQAPPTSE 120
A VN++ T +++ E R VL+ + N+ IVE G + AL HL P
Sbjct: 193 ALVNIMRT-YTY-EKLLWTTSRVLKVLSVCSSNKPA---IVEAGGMQALGLHLTDPSQRL 247
Query: 121 ADRNLKPFEHEVEKGSAFALGLLAVKPEHQQLIVDNGALSHLVNLLKRHMDSNCSRAVNS 180
L + L A K E + G L LV LL S +N
Sbjct: 248 VQNCLWTLRN---------LSDAATKQEGME-----GLLGTLVQLLG-------SDDIN- 285
Query: 181 VIRRAADAITNLAHENSSIKTRVRMEGGIPPLVE-LLEFTDTK-VQRAAAGALRTLAFKN 238
V+ AA ++NL N K V GGI LV +L D + + A ALR L ++
Sbjct: 286 VVTCAAGILSNLTCNNYKNKMMVCQVGGIEALVRTVLRAGDREDITEPAICALRHLTSRH 345
Query: 239 DEN---KNQIVECNALPTLILMLRSEDSAIHYEA-VGVIGNLVHSSPNIKKEVLAAGALQ 294
E +N + LP ++ +L +A VG+I NL N + GA+
Sbjct: 346 QEAEMAQNAVRLHYGLPVVVKLLHPPSHWPLIKATVGLIRNLALCPAN-HAPLREQGAIP 404
Query: 295 PVIGLLSSCCSESQREAAL-------------------LLGQFAATDSDCKVHIVQRG-- 333
++ LL ++QR ++ G D IV RG
Sbjct: 405 RLVQLLVRAHQDTQRRTSMGGTQQQFVEGVRMEEIVEGCTGALHILARDVHNRIVIRGLN 464
Query: 334 AVRPLIEMLQSPDVQLREMSAFALGRLAQDMHNQAGIAHNGGLVPLLKLLDSKNGSLQHN 393
+ +++L SP ++ ++A L LAQD I G PL +LL S+N +
Sbjct: 465 TIPLFVQLLYSPIENIQRVAAGVLCELAQDKEAAEAIEAEGATAPLTELLHSRNEGVATY 524
Query: 394 AAFALYGLADNEDNVADF 411
AA L+ ++ ED D+
Sbjct: 525 AAAVLFRMS--EDKPQDY 540
>pdb|2BCT|A Chain A, The Armadillo Repeat Region From Murine Beta-Catenin
Length = 516
Score = 43.9 bits (102), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 84/347 (24%), Positives = 136/347 (39%), Gaps = 65/347 (18%)
Query: 76 DRAAAKRATHVLAELAKNEEVVNWIVEG-GAVPALVKHLQAPPTSEADRNLKPFEHEVEK 134
D+ +A ++ +L+K E + I+ V A+V+ +Q E R H +
Sbjct: 15 DQVVVNKAAVMVHQLSKKEASRHAIMRSPQMVSAIVRTMQNTNDVETARCTAGTLHNL-- 72
Query: 135 GSAFALGLLAVKPEHQQLIVDNGALSHLVNLLKRHMDSNCSRAVNSVIRRAADAITNLAH 194
S GLLA I +G + LV +L V+SV+ A + NL
Sbjct: 73 -SHHREGLLA--------IFKSGGIPALVKML--------GSPVDSVLFYAITTLHNLLL 115
Query: 195 ENSSIKTRVRMEGGIPPLVELLEFTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTL 254
K VR+ GG+ +V LL T+ K L+ LA+ N E+K I+ L
Sbjct: 116 HQEGAKMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQILAYGNQESKLIILASGGPQAL 175
Query: 255 ILMLRSEDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLSSCCSESQREAALL 314
+ ++R+ YE L+ ++ + K +LS C S
Sbjct: 176 VNIMRTYT----YE------KLLWTTSRVLK-------------VLSVCSSN-------- 204
Query: 315 LGQFAATDSDCKVHIVQRGAVRPLIEMLQSPDVQLREMSAFALGRLAQDMHNQAGIAHNG 374
K IV+ G ++ L L P +L + + L L+ Q G+ G
Sbjct: 205 -----------KPAIVEAGGMQALGLHLTDPSQRLVQNCLWTLRNLSDAATKQEGM--EG 251
Query: 375 GLVPLLKLLDSKNGSLQHNAAFALYGL-ADNEDNVADFIRVGGVQKL 420
L L++LL S + ++ AA L L +N N +VGG++ L
Sbjct: 252 LLGTLVQLLGSDDINVVTCAAGILSNLTCNNYKNKMMVCQVGGIEAL 298
Score = 39.3 bits (90), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 95/371 (25%), Positives = 146/371 (39%), Gaps = 55/371 (14%)
Query: 61 AQVNVLNTTFSWLEADRAAAKRATHVLAELAKNEEVVNWIVEGGAVPALVKHLQAPPTSE 120
A VN++ T +++ E R VL+ + N+ IVE G + AL HL P
Sbjct: 174 ALVNIMRT-YTY-EKLLWTTSRVLKVLSVCSSNKPA---IVEAGGMQALGLHLTDPSQRL 228
Query: 121 ADRNLKPFEHEVEKGSAFALGLLAVKPEHQQLIVDNGALSHLVNLLKRHMDSNCSRAVNS 180
L + L A K E + G L LV LL S +N
Sbjct: 229 VQNCLWTLRN---------LSDAATKQEGME-----GLLGTLVQLLG-------SDDIN- 266
Query: 181 VIRRAADAITNLAHENSSIKTRVRMEGGIPPLVE-LLEFTDTK-VQRAAAGALRTLAFKN 238
V+ AA ++NL N K V GGI LV +L D + + A ALR L ++
Sbjct: 267 VVTCAAGILSNLTCNNYKNKMMVCQVGGIEALVRTVLRAGDREDITEPAICALRHLTSRH 326
Query: 239 DEN---KNQIVECNALPTLILMLRSEDSAIHYEA-VGVIGNLVHSSPNIKKEVLAAGALQ 294
E +N + LP ++ +L +A VG+I NL N + GA+
Sbjct: 327 QEAEMAQNAVRLHYGLPVVVKLLHPPSHWPLIKATVGLIRNLALCPAN-HAPLREQGAIP 385
Query: 295 PVIGLLSSCCSESQREAAL-------------------LLGQFAATDSDCKVHIVQRG-- 333
++ LL ++QR ++ G D IV RG
Sbjct: 386 RLVQLLVRAHQDTQRRTSMGGTQQQFVEGVRMEEIVEGCTGALHILARDVHNRIVIRGLN 445
Query: 334 AVRPLIEMLQSPDVQLREMSAFALGRLAQDMHNQAGIAHNGGLVPLLKLLDSKNGSLQHN 393
+ +++L SP ++ ++A L LAQD I G PL +LL S+N +
Sbjct: 446 TIPLFVQLLYSPIENIQRVAAGVLCELAQDKEAAEAIEAEGATAPLTELLHSRNEGVATY 505
Query: 394 AAFALYGLADN 404
AA L+ ++++
Sbjct: 506 AAAVLFRMSED 516
>pdb|1CS3|A Chain A, Structure Of BtbPOZ TRANSCRIPTION REPRESSION DOMAIN FROM
PROMELOCYTIC Leukemia Zinc Finger Oncoprotein
Length = 116
Score = 43.9 bits (102), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 25/98 (25%), Positives = 47/98 (47%), Gaps = 5/98 (5%)
Query: 530 PPSPTPQVYLGDQFVNNATLSDVTFLVEGRRFYAHRICLLASSDAFRAMFDGGYREKDAR 589
P PT + +Q TL DV +V+ + F+AHR L +S F +F ++++
Sbjct: 8 PSHPTGLLCKANQMRLAGTLCDVVIMVDSQEFHAHRTVLACTSKMFEILF-----HRNSQ 62
Query: 590 DIEIPNIRWEVFELMMRFIYTGSVDVTLDIAQDLLRAA 627
+ + + F+ ++ + YT ++ + DLL AA
Sbjct: 63 HYTLDFLSPKTFQQILEYAYTATLQAKAEDLDDLLYAA 100
>pdb|1BUO|A Chain A, Btb Domain From Plzf
Length = 121
Score = 43.9 bits (102), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 25/98 (25%), Positives = 47/98 (47%), Gaps = 5/98 (5%)
Query: 530 PPSPTPQVYLGDQFVNNATLSDVTFLVEGRRFYAHRICLLASSDAFRAMFDGGYREKDAR 589
P PT + +Q TL DV +V+ + F+AHR L +S F +F ++++
Sbjct: 9 PSHPTGLLCKANQMRLAGTLCDVVIMVDSQEFHAHRTVLACTSKMFEILF-----HRNSQ 63
Query: 590 DIEIPNIRWEVFELMMRFIYTGSVDVTLDIAQDLLRAA 627
+ + + F+ ++ + YT ++ + DLL AA
Sbjct: 64 HYTLDFLSPKTFQQILEYAYTATLQAKAEDLDDLLYAA 101
>pdb|1LUJ|A Chain A, Crystal Structure Of The Beta-CateninICAT COMPLEX
Length = 514
Score = 43.9 bits (102), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 84/347 (24%), Positives = 136/347 (39%), Gaps = 65/347 (18%)
Query: 76 DRAAAKRATHVLAELAKNEEVVNWIVEG-GAVPALVKHLQAPPTSEADRNLKPFEHEVEK 134
D+ +A ++ +L+K E + I+ V A+V+ +Q E R H +
Sbjct: 15 DQVVVNKAAVMVHQLSKKEASRHAIMRSPQMVSAIVRTMQNTNDVETARCTAGTLHNL-- 72
Query: 135 GSAFALGLLAVKPEHQQLIVDNGALSHLVNLLKRHMDSNCSRAVNSVIRRAADAITNLAH 194
S GLLA I +G + LV +L V+SV+ A + NL
Sbjct: 73 -SHHREGLLA--------IFKSGGIPALVKML--------GSPVDSVLFYAITTLHNLLL 115
Query: 195 ENSSIKTRVRMEGGIPPLVELLEFTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTL 254
K VR+ GG+ +V LL T+ K L+ LA+ N E+K I+ L
Sbjct: 116 HQEGAKMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQILAYGNQESKLIILASGGPQAL 175
Query: 255 ILMLRSEDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLSSCCSESQREAALL 314
+ ++R+ YE L+ ++ + K +LS C S
Sbjct: 176 VNIMRTYT----YE------KLLWTTSRVLK-------------VLSVCSSN-------- 204
Query: 315 LGQFAATDSDCKVHIVQRGAVRPLIEMLQSPDVQLREMSAFALGRLAQDMHNQAGIAHNG 374
K IV+ G ++ L L P +L + + L L+ Q G+ G
Sbjct: 205 -----------KPAIVEAGGMQALGLHLTDPSQRLVQNCLWTLRNLSDAATKQEGM--EG 251
Query: 375 GLVPLLKLLDSKNGSLQHNAAFALYGL-ADNEDNVADFIRVGGVQKL 420
L L++LL S + ++ AA L L +N N +VGG++ L
Sbjct: 252 LLGTLVQLLGSDDINVVTCAAGILSNLTCNNYKNKMMVCQVGGIEAL 298
Score = 38.1 bits (87), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 95/366 (25%), Positives = 142/366 (38%), Gaps = 55/366 (15%)
Query: 61 AQVNVLNTTFSWLEADRAAAKRATHVLAELAKNEEVVNWIVEGGAVPALVKHLQAPPTSE 120
A VN++ T +++ E R VL+ + N+ IVE G + AL HL P
Sbjct: 174 ALVNIMRT-YTY-EKLLWTTSRVLKVLSVCSSNKPA---IVEAGGMQALGLHLTDPSQRL 228
Query: 121 ADRNLKPFEHEVEKGSAFALGLLAVKPEHQQLIVDNGALSHLVNLLKRHMDSNCSRAVNS 180
L + L A K E + G L LV LL S +N
Sbjct: 229 VQNCLWTLRN---------LSDAATKQEGME-----GLLGTLVQLLG-------SDDIN- 266
Query: 181 VIRRAADAITNLAHENSSIKTRVRMEGGIPPLVE-LLEFTDTK-VQRAAAGALRTLAFKN 238
V+ AA ++NL N K V GGI LV +L D + + A ALR L ++
Sbjct: 267 VVTCAAGILSNLTCNNYKNKMMVCQVGGIEALVRTVLRAGDREDITEPAICALRHLTSRH 326
Query: 239 DEN---KNQIVECNALPTLILMLRSEDSAIHYEA-VGVIGNLVHSSPNIKKEVLAAGALQ 294
E +N + LP ++ +L +A VG+I NL N + GA+
Sbjct: 327 QEAEMAQNAVRLHYGLPVVVKLLHPPSHWPLIKATVGLIRNLALCPAN-HAPLREQGAIP 385
Query: 295 PVIGLLSSCCSESQREAAL-------------------LLGQFAATDSDCKVHIVQRG-- 333
++ LL ++QR ++ G D IV RG
Sbjct: 386 RLVQLLVRAHQDTQRRTSMGGTQQQFVEGVRMEEIVEGCTGALHILARDVHNRIVIRGLN 445
Query: 334 AVRPLIEMLQSPDVQLREMSAFALGRLAQDMHNQAGIAHNGGLVPLLKLLDSKNGSLQHN 393
+ +++L SP ++ ++A L LAQD I G PL +LL S+N +
Sbjct: 446 TIPLFVQLLYSPIENIQRVAAGVLCELAQDKEAAEAIEAEGATAPLTELLHSRNEGVATY 505
Query: 394 AAFALY 399
AA L+
Sbjct: 506 AAAVLF 511
>pdb|1G3J|A Chain A, Crystal Structure Of The Xtcf3-CbdBETA-Catenin Armadillo
Repeat Complex
pdb|1G3J|C Chain C, Crystal Structure Of The Xtcf3-CbdBETA-Catenin Armadillo
Repeat Complex
pdb|1TH1|A Chain A, Beta-Catenin In Complex With A Phosphorylated Apc 20aa
Repeat Fragment
pdb|1TH1|B Chain B, Beta-Catenin In Complex With A Phosphorylated Apc 20aa
Repeat Fragment
Length = 532
Score = 43.9 bits (102), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 84/347 (24%), Positives = 136/347 (39%), Gaps = 65/347 (18%)
Query: 76 DRAAAKRATHVLAELAKNEEVVNWIVEG-GAVPALVKHLQAPPTSEADRNLKPFEHEVEK 134
D+ +A ++ +L+K E + I+ V A+V+ +Q E R H +
Sbjct: 32 DQVVVNKAAVMVHQLSKKEASRHAIMRSPQMVSAIVRTMQNTNDVETARCTAGTLHNL-- 89
Query: 135 GSAFALGLLAVKPEHQQLIVDNGALSHLVNLLKRHMDSNCSRAVNSVIRRAADAITNLAH 194
S GLLA I +G + LV +L V+SV+ A + NL
Sbjct: 90 -SHHREGLLA--------IFKSGGIPALVKML--------GSPVDSVLFYAITTLHNLLL 132
Query: 195 ENSSIKTRVRMEGGIPPLVELLEFTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTL 254
K VR+ GG+ +V LL T+ K L+ LA+ N E+K I+ L
Sbjct: 133 HQEGAKMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQILAYGNQESKLIILASGGPQAL 192
Query: 255 ILMLRSEDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLSSCCSESQREAALL 314
+ ++R+ YE L+ ++ + K +LS C S
Sbjct: 193 VNIMRTYT----YE------KLLWTTSRVLK-------------VLSVCSSN-------- 221
Query: 315 LGQFAATDSDCKVHIVQRGAVRPLIEMLQSPDVQLREMSAFALGRLAQDMHNQAGIAHNG 374
K IV+ G ++ L L P +L + + L L+ Q G+ G
Sbjct: 222 -----------KPAIVEAGGMQALGLHLTDPSQRLVQNCLWTLRNLSDAATKQEGM--EG 268
Query: 375 GLVPLLKLLDSKNGSLQHNAAFALYGL-ADNEDNVADFIRVGGVQKL 420
L L++LL S + ++ AA L L +N N +VGG++ L
Sbjct: 269 LLGTLVQLLGSDDINVVTCAAGILSNLTCNNYKNKMMVCQVGGIEAL 315
Score = 38.9 bits (89), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 95/370 (25%), Positives = 145/370 (39%), Gaps = 55/370 (14%)
Query: 61 AQVNVLNTTFSWLEADRAAAKRATHVLAELAKNEEVVNWIVEGGAVPALVKHLQAPPTSE 120
A VN++ T +++ E R VL+ + N+ IVE G + AL HL P
Sbjct: 191 ALVNIMRT-YTY-EKLLWTTSRVLKVLSVCSSNKPA---IVEAGGMQALGLHLTDPSQRL 245
Query: 121 ADRNLKPFEHEVEKGSAFALGLLAVKPEHQQLIVDNGALSHLVNLLKRHMDSNCSRAVNS 180
L + L A K E + G L LV LL S +N
Sbjct: 246 VQNCLWTLRN---------LSDAATKQEGME-----GLLGTLVQLLG-------SDDIN- 283
Query: 181 VIRRAADAITNLAHENSSIKTRVRMEGGIPPLVE-LLEFTDTK-VQRAAAGALRTLAFKN 238
V+ AA ++NL N K V GGI LV +L D + + A ALR L ++
Sbjct: 284 VVTCAAGILSNLTCNNYKNKMMVCQVGGIEALVRTVLRAGDREDITEPAICALRHLTSRH 343
Query: 239 DEN---KNQIVECNALPTLILMLRSEDSAIHYEA-VGVIGNLVHSSPNIKKEVLAAGALQ 294
E +N + LP ++ +L +A VG+I NL N + GA+
Sbjct: 344 QEAEMAQNAVRLHYGLPVVVKLLHPPSHWPLIKATVGLIRNLALCPAN-HAPLREQGAIP 402
Query: 295 PVIGLLSSCCSESQREAAL-------------------LLGQFAATDSDCKVHIVQRG-- 333
++ LL ++QR ++ G D IV RG
Sbjct: 403 RLVQLLVRAHQDTQRRTSMGGTQQQFVEGVRMEEIVEGCTGALHILARDVHNRIVIRGLN 462
Query: 334 AVRPLIEMLQSPDVQLREMSAFALGRLAQDMHNQAGIAHNGGLVPLLKLLDSKNGSLQHN 393
+ +++L SP ++ ++A L LAQD I G PL +LL S+N +
Sbjct: 463 TIPLFVQLLYSPIENIQRVAAGVLCELAQDKEAAEAIEAEGATAPLTELLHSRNEGVATY 522
Query: 394 AAFALYGLAD 403
AA L+ +++
Sbjct: 523 AAAVLFRMSE 532
>pdb|1QZ7|A Chain A, Beta-Catenin Binding Domain Of Axin In Complex With Beta-
Catenin
Length = 533
Score = 43.9 bits (102), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 84/347 (24%), Positives = 136/347 (39%), Gaps = 65/347 (18%)
Query: 76 DRAAAKRATHVLAELAKNEEVVNWIVEG-GAVPALVKHLQAPPTSEADRNLKPFEHEVEK 134
D+ +A ++ +L+K E + I+ V A+V+ +Q E R H +
Sbjct: 32 DQVVVNKAAVMVHQLSKKEASRHAIMRSPQMVSAIVRTMQNTNDVETARCTAGTLHNL-- 89
Query: 135 GSAFALGLLAVKPEHQQLIVDNGALSHLVNLLKRHMDSNCSRAVNSVIRRAADAITNLAH 194
S GLLA I +G + LV +L V+SV+ A + NL
Sbjct: 90 -SHHREGLLA--------IFKSGGIPALVKML--------GSPVDSVLFYAITTLHNLLL 132
Query: 195 ENSSIKTRVRMEGGIPPLVELLEFTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTL 254
K VR+ GG+ +V LL T+ K L+ LA+ N E+K I+ L
Sbjct: 133 HQEGAKMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQILAYGNQESKLIILASGGPQAL 192
Query: 255 ILMLRSEDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLSSCCSESQREAALL 314
+ ++R+ YE L+ ++ + K +LS C S
Sbjct: 193 VNIMRTYT----YE------KLLWTTSRVLK-------------VLSVCSSN-------- 221
Query: 315 LGQFAATDSDCKVHIVQRGAVRPLIEMLQSPDVQLREMSAFALGRLAQDMHNQAGIAHNG 374
K IV+ G ++ L L P +L + + L L+ Q G+ G
Sbjct: 222 -----------KPAIVEAGGMQALGLHLTDPSQRLVQNCLWTLRNLSDAATKQEGM--EG 268
Query: 375 GLVPLLKLLDSKNGSLQHNAAFALYGL-ADNEDNVADFIRVGGVQKL 420
L L++LL S + ++ AA L L +N N +VGG++ L
Sbjct: 269 LLGTLVQLLGSDDINVVTCAAGILSNLTCNNYKNKMMVCQVGGIEAL 315
Score = 39.7 bits (91), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 95/371 (25%), Positives = 146/371 (39%), Gaps = 55/371 (14%)
Query: 61 AQVNVLNTTFSWLEADRAAAKRATHVLAELAKNEEVVNWIVEGGAVPALVKHLQAPPTSE 120
A VN++ T +++ E R VL+ + N+ IVE G + AL HL P
Sbjct: 191 ALVNIMRT-YTY-EKLLWTTSRVLKVLSVCSSNKPA---IVEAGGMQALGLHLTDPSQRL 245
Query: 121 ADRNLKPFEHEVEKGSAFALGLLAVKPEHQQLIVDNGALSHLVNLLKRHMDSNCSRAVNS 180
L + L A K E + G L LV LL S +N
Sbjct: 246 VQNCLWTLRN---------LSDAATKQEGME-----GLLGTLVQLLG-------SDDIN- 283
Query: 181 VIRRAADAITNLAHENSSIKTRVRMEGGIPPLVE-LLEFTDTK-VQRAAAGALRTLAFKN 238
V+ AA ++NL N K V GGI LV +L D + + A ALR L ++
Sbjct: 284 VVTCAAGILSNLTCNNYKNKMMVCQVGGIEALVRTVLRAGDREDITEPAICALRHLTSRH 343
Query: 239 DEN---KNQIVECNALPTLILMLRSEDSAIHYEA-VGVIGNLVHSSPNIKKEVLAAGALQ 294
E +N + LP ++ +L +A VG+I NL N + GA+
Sbjct: 344 QEAEMAQNAVRLHYGLPVVVKLLHPPSHWPLIKATVGLIRNLALCPAN-HAPLREQGAIP 402
Query: 295 PVIGLLSSCCSESQREAAL-------------------LLGQFAATDSDCKVHIVQRG-- 333
++ LL ++QR ++ G D IV RG
Sbjct: 403 RLVQLLVRAHQDTQRRTSMGGTQQQFVEGVRMEEIVEGCTGALHILARDVHNRIVIRGLN 462
Query: 334 AVRPLIEMLQSPDVQLREMSAFALGRLAQDMHNQAGIAHNGGLVPLLKLLDSKNGSLQHN 393
+ +++L SP ++ ++A L LAQD I G PL +LL S+N +
Sbjct: 463 TIPLFVQLLYSPIENIQRVAAGVLCELAQDKEAAEAIEAEGATAPLTELLHSRNEGVATY 522
Query: 394 AAFALYGLADN 404
AA L+ ++++
Sbjct: 523 AAAVLFRMSED 533
>pdb|4DJS|A Chain A, Structure Of Beta-Catenin In Complex With A Stapled
Peptide Inhibitor
Length = 518
Score = 43.9 bits (102), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 84/347 (24%), Positives = 136/347 (39%), Gaps = 65/347 (18%)
Query: 76 DRAAAKRATHVLAELAKNEEVVNWIVEG-GAVPALVKHLQAPPTSEADRNLKPFEHEVEK 134
D+ +A ++ +L+K E + I+ V A+V+ +Q E R H +
Sbjct: 17 DQVVVNKAAVMVHQLSKKEASRHAIMRSPQMVSAIVRTMQNTNDVETARCTAGTLHNL-- 74
Query: 135 GSAFALGLLAVKPEHQQLIVDNGALSHLVNLLKRHMDSNCSRAVNSVIRRAADAITNLAH 194
S GLLA I +G + LV +L V+SV+ A + NL
Sbjct: 75 -SHHREGLLA--------IFKSGGIPALVKML--------GSPVDSVLFYAITTLHNLLL 117
Query: 195 ENSSIKTRVRMEGGIPPLVELLEFTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTL 254
K VR+ GG+ +V LL T+ K L+ LA+ N E+K I+ L
Sbjct: 118 HQEGAKMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQILAYGNQESKLIILASGGPQAL 177
Query: 255 ILMLRSEDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLSSCCSESQREAALL 314
+ ++R+ YE L+ ++ + K +LS C S
Sbjct: 178 VNIMRTYT----YE------KLLWTTSRVLK-------------VLSVCSSN-------- 206
Query: 315 LGQFAATDSDCKVHIVQRGAVRPLIEMLQSPDVQLREMSAFALGRLAQDMHNQAGIAHNG 374
K IV+ G ++ L L P +L + + L L+ Q G+ G
Sbjct: 207 -----------KPAIVEAGGMQALGLHLTDPSQRLVQNCLWTLRNLSDAATKQEGM--EG 253
Query: 375 GLVPLLKLLDSKNGSLQHNAAFALYGL-ADNEDNVADFIRVGGVQKL 420
L L++LL S + ++ AA L L +N N +VGG++ L
Sbjct: 254 LLGTLVQLLGSDDINVVTCAAGILSNLTCNNYKNKMMVCQVGGIEAL 300
Score = 39.3 bits (90), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 95/371 (25%), Positives = 146/371 (39%), Gaps = 55/371 (14%)
Query: 61 AQVNVLNTTFSWLEADRAAAKRATHVLAELAKNEEVVNWIVEGGAVPALVKHLQAPPTSE 120
A VN++ T +++ E R VL+ + N+ IVE G + AL HL P
Sbjct: 176 ALVNIMRT-YTY-EKLLWTTSRVLKVLSVCSSNKPA---IVEAGGMQALGLHLTDPSQRL 230
Query: 121 ADRNLKPFEHEVEKGSAFALGLLAVKPEHQQLIVDNGALSHLVNLLKRHMDSNCSRAVNS 180
L + L A K E + G L LV LL S +N
Sbjct: 231 VQNCLWTLRN---------LSDAATKQEGME-----GLLGTLVQLLG-------SDDIN- 268
Query: 181 VIRRAADAITNLAHENSSIKTRVRMEGGIPPLVE-LLEFTDTK-VQRAAAGALRTLAFKN 238
V+ AA ++NL N K V GGI LV +L D + + A ALR L ++
Sbjct: 269 VVTCAAGILSNLTCNNYKNKMMVCQVGGIEALVRTVLRAGDREDITEPAICALRHLTSRH 328
Query: 239 DEN---KNQIVECNALPTLILMLRSEDSAIHYEA-VGVIGNLVHSSPNIKKEVLAAGALQ 294
E +N + LP ++ +L +A VG+I NL N + GA+
Sbjct: 329 QEAEMAQNAVRLHYGLPVVVKLLHPPSHWPLIKATVGLIRNLALCPAN-HAPLREQGAIP 387
Query: 295 PVIGLLSSCCSESQREAAL-------------------LLGQFAATDSDCKVHIVQRG-- 333
++ LL ++QR ++ G D IV RG
Sbjct: 388 RLVQLLVRAHQDTQRRTSMGGTQQQFVEGVRMEEIVEGCTGALHILARDVHNRIVIRGLN 447
Query: 334 AVRPLIEMLQSPDVQLREMSAFALGRLAQDMHNQAGIAHNGGLVPLLKLLDSKNGSLQHN 393
+ +++L SP ++ ++A L LAQD I G PL +LL S+N +
Sbjct: 448 TIPLFVQLLYSPIENIQRVAAGVLCELAQDKEAAEAIEAEGATAPLTELLHSRNEGVATY 507
Query: 394 AAFALYGLADN 404
AA L+ ++++
Sbjct: 508 AAAVLFRMSED 518
>pdb|3M8V|A Chain A, Crystal Structure Of The Btb Domain From KaisoZBTB33, FORM
II
pdb|3M4T|A Chain A, Crystal Structure Of The Btb Domain From KaisoZBTB33, FORM
I
Length = 124
Score = 43.1 bits (100), Expect = 6e-04, Method: Composition-based stats.
Identities = 30/91 (32%), Positives = 49/91 (53%), Gaps = 9/91 (9%)
Query: 551 DVTFLVEGRRFYAHRICLLASSDAFRAMFDGGYREKDARDIEIPNIRWEVFELMMRFIYT 610
DVT +VE R+F AH+ L ASS F +F + +E+ IR E+F ++ +IY+
Sbjct: 35 DVTVIVEDRKFRAHKNILSASSTYFHQLFSVA-----GQVVELSFIRAEIFAEILNYIYS 89
Query: 611 GS-VDVTLDIAQDLLRAADQYLLEGLKRLCE 640
V V D+ +L+++ L G+K + E
Sbjct: 90 SKIVRVRSDLLDELIKSGQ---LLGVKFIAE 117
>pdb|3GA1|A Chain A, Crystal Structure Of The Human Nac1 Poz Domain
pdb|3GA1|B Chain B, Crystal Structure Of The Human Nac1 Poz Domain
Length = 129
Score = 42.4 bits (98), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 27/82 (32%), Positives = 45/82 (54%), Gaps = 6/82 (7%)
Query: 551 DVTFLVEGRRFYAHRICLLASSDAFRAMFDGGYREKDARDIEIP-NIRWEVFELMMRFIY 609
DV+ +V+G F AHR L ASS FR +F+ + +E+P ++ + F+ ++ F Y
Sbjct: 35 DVSVVVKGHAFKAHRAVLAASSSYFRDLFN----NSRSAVVELPAAVQPQSFQQILSFCY 90
Query: 610 TGSVDVTLDIAQDLLRAADQYL 631
TG + + + QDLL +L
Sbjct: 91 TGRLSMNVG-DQDLLMYTAGFL 111
>pdb|2Z8H|A Chain A, Structure Of Mouse Bach1 Btb Domain
Length = 138
Score = 42.4 bits (98), Expect = 0.001, Method: Composition-based stats.
Identities = 29/93 (31%), Positives = 48/93 (51%), Gaps = 5/93 (5%)
Query: 549 LSDVTFLVEGRRFYAHRICLLASSDAFRAMFDGGYREKDAR-DIEIP-NIRWEVFELMMR 606
L DVT LVEG+RF AHR L A S F + G + DA + +P + + FE +++
Sbjct: 36 LCDVTVLVEGQRFRAHRSVLAACSSYFHSRIVG---QTDAELTVTLPEEVTVKGFEPLIQ 92
Query: 607 FIYTGSVDVTLDIAQDLLRAADQYLLEGLKRLC 639
F YT + ++ D ++ R + + ++ C
Sbjct: 93 FAYTAKLILSKDNVDEVCRCVEFLSVHNIEESC 125
>pdb|3FKC|A Chain A, Crystal Structure Of Human Zinc Finger And Btb Domain
Containing 33
Length = 116
Score = 42.4 bits (98), Expect = 0.001, Method: Composition-based stats.
Identities = 26/78 (33%), Positives = 43/78 (55%), Gaps = 6/78 (7%)
Query: 551 DVTFLVEGRRFYAHRICLLASSDAFRAMFDGGYREKDARDIEIPNIRWEVFELMMRFIYT 610
DVT +VE R+F AH+ L ASS F +F + +E+ IR E+F ++ +IY+
Sbjct: 33 DVTVIVEDRKFRAHKNILSASSTYFHQLFSVA-----GQVVELSFIRAEIFAEILNYIYS 87
Query: 611 GS-VDVTLDIAQDLLRAA 627
V V D+ +L+++
Sbjct: 88 SKIVRVRSDLLDELIKSG 105
>pdb|2Q81|A Chain A, Crystal Structure Of The Miz-1 BtbPOZ DOMAIN
pdb|2Q81|B Chain B, Crystal Structure Of The Miz-1 BtbPOZ DOMAIN
pdb|2Q81|C Chain C, Crystal Structure Of The Miz-1 BtbPOZ DOMAIN
pdb|2Q81|D Chain D, Crystal Structure Of The Miz-1 BtbPOZ DOMAIN
Length = 119
Score = 40.4 bits (93), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 24/79 (30%), Positives = 41/79 (51%), Gaps = 5/79 (6%)
Query: 549 LSDVTFLVEGRRFYAHRICLLASSDAFRAMFDGGYREKDARDIEIPNIRWEVFELMMRFI 608
L D TF+V+G F AH+ L A S+ F+ +F +KD ++I N ++ F+
Sbjct: 27 LCDCTFVVDGVHFKAHKAVLAACSEYFKMLF---VDQKDVVHLDISNAAG--LGQVLEFM 81
Query: 609 YTGSVDVTLDIAQDLLRAA 627
YT + ++ + D+L A
Sbjct: 82 YTAKLSLSPENVDDVLAVA 100
>pdb|3M52|A Chain A, Crystal Structure Of The Btb Domain From The Miz-1ZBTB17
Transcription Regulator
pdb|3M52|B Chain B, Crystal Structure Of The Btb Domain From The Miz-1ZBTB17
Transcription Regulator
Length = 117
Score = 40.0 bits (92), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 24/79 (30%), Positives = 41/79 (51%), Gaps = 5/79 (6%)
Query: 549 LSDVTFLVEGRRFYAHRICLLASSDAFRAMFDGGYREKDARDIEIPNIRWEVFELMMRFI 608
L D TF+V+G F AH+ L A S+ F+ +F +KD ++I N ++ F+
Sbjct: 25 LCDCTFVVDGVHFKAHKAVLAACSEYFKMLF---VDQKDVVHLDISNAAG--LGQVLEFM 79
Query: 609 YTGSVDVTLDIAQDLLRAA 627
YT + ++ + D+L A
Sbjct: 80 YTAKLSLSPENVDDVLAVA 98
>pdb|3SLA|A Chain A, X-Ray Structure Of First Four Repeats Of Human
Beta-Catenin
pdb|3SLA|B Chain B, X-Ray Structure Of First Four Repeats Of Human
Beta-Catenin
pdb|3SLA|C Chain C, X-Ray Structure Of First Four Repeats Of Human
Beta-Catenin
pdb|3SLA|D Chain D, X-Ray Structure Of First Four Repeats Of Human
Beta-Catenin
pdb|3SLA|E Chain E, X-Ray Structure Of First Four Repeats Of Human
Beta-Catenin
Length = 168
Score = 39.3 bits (90), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 36/146 (24%), Positives = 64/146 (43%), Gaps = 13/146 (8%)
Query: 181 VIRRAADAITNLAHENSSIKTRVRMEGGIPPLVELLEFT-DTKVQRAAAGALRTLAFKND 239
V+ +AA + L+ + +S +R + +V ++ T D + R AG L L+ +
Sbjct: 29 VVNKAAVMVHQLSKKEASRHAIMRSPQMVSAIVRTMQNTNDVETARCTAGTLHNLS-HHR 87
Query: 240 ENKNQIVECNALPTLILMLRSEDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGL 299
E I + +P L+ ML S ++ + A+ + NL+ K V AG LQ ++ L
Sbjct: 88 EGLLAIFKSGGIPALVKMLGSPVDSVLFYAITTLHNLLLHQEGAKMAVRLAGGLQKMVAL 147
Query: 300 LSSCCSESQREAALLLGQFAATDSDC 325
L+ +F A +DC
Sbjct: 148 LNKTNV-----------KFLAITTDC 162
Score = 33.5 bits (75), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 43/166 (25%), Positives = 66/166 (39%), Gaps = 28/166 (16%)
Query: 76 DRAAAKRATHVLAELAKNEEVVNWIVEG-GAVPALVKHLQAPPTSEADR----NLKPFEH 130
D+ +A ++ +L+K E + I+ V A+V+ +Q E R L H
Sbjct: 26 DQVVVNKAAVMVHQLSKKEASRHAIMRSPQMVSAIVRTMQNTNDVETARCTAGTLHNLSH 85
Query: 131 EVEKGSAFALGLLAVKPEHQQLIVDNGALSHLVNLLKRHMDSNCSRAVNSVIRRAADAIT 190
E GLLA I +G + LV +L V+SV+ A +
Sbjct: 86 HRE-------GLLA--------IFKSGGIPALVKML--------GSPVDSVLFYAITTLH 122
Query: 191 NLAHENSSIKTRVRMEGGIPPLVELLEFTDTKVQRAAAGALRTLAF 236
NL K VR+ GG+ +V LL T+ K L+ LA+
Sbjct: 123 NLLLHQEGAKMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQILAY 168
>pdb|3IFQ|A Chain A, Interction Of Plakoglobin And Beta-Catenin With Desmosomal
Cadherins
pdb|3IFQ|B Chain B, Interction Of Plakoglobin And Beta-Catenin With Desmosomal
Cadherins
Length = 553
Score = 39.3 bits (90), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 56/253 (22%), Positives = 103/253 (40%), Gaps = 27/253 (10%)
Query: 180 SVIRRAADAITNLAHENSSIKTRVRMEGGIPPLVELLEFTDTK--VQRAAAGALRTLAFK 237
+V+ A ++NL NS KT V G+ L+ + K + A ALR L +
Sbjct: 283 NVLTCATGTLSNLTCNNSKNKTLVTQNSGVEALIHAILRAGDKDDITEPAVCALRHLTSR 342
Query: 238 NDEN---KNQIVECNALPTLILMLRSEDSAIHYEA-VGVIGNLVHSSPNIKKEVLAAGAL 293
+ E +N + +P ++ +L + +A +G+I NL N + A +
Sbjct: 343 HPEAEMAQNSVRLNYGIPAIVKLLNQPNQWPLVKATIGLIRNLALCPAN-HAPLQEAAVI 401
Query: 294 QPVIGLLSSCCSESQREAALLLGQ--------------------FAATDSDCKVHIVQRG 333
++ LL ++QR A Q A D ++ I +
Sbjct: 402 PRLVQLLVKAHQDAQRHVAAGTQQPYTDGVRMEEIVEGCTGALHILARDPMNRMEIFRLN 461
Query: 334 AVRPLIEMLQSPDVQLREMSAFALGRLAQDMHNQAGIAHNGGLVPLLKLLDSKNGSLQHN 393
+ +++L S ++ ++A L LAQD I G PL++LL S+N
Sbjct: 462 TIPLFVQLLYSSVENIQRVAAGVLCELAQDKEAADAIDAEGASAPLMELLHSRNEGTATY 521
Query: 394 AAFALYGLADNED 406
AA L+ ++++++
Sbjct: 522 AAAVLFRISEDKN 534
Score = 38.9 bits (89), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 50/225 (22%), Positives = 97/225 (43%), Gaps = 3/225 (1%)
Query: 181 VIRRAADAITNLAHENSSIKTRVRMEGGIPPLVELLEFT-DTKVQRAAAGALRTLAFKND 239
V+ +AA + L+ + +S + + + +V ++ T D R L L+ +
Sbjct: 35 VVTKAAMIVNQLSKKEASRRALMGSPQLVAAVVRTMQNTSDLDTARCTTSILHNLSH-HR 93
Query: 240 ENKNQIVECNALPTLILMLRSEDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGL 299
E I + +P L+ ML S ++ + A+ + NL+ K V A LQ ++ L
Sbjct: 94 EGLLAIFKSGGIPALVRMLSSPVESVLFYAITTLHNLLLYQEGAKMAVRLADGLQKMVPL 153
Query: 300 LSSCCSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQSPDVQ-LREMSAFALG 358
L+ + L A + + K+ I+ G + L++++++ + L ++ L
Sbjct: 154 LNKNNPKFLAITTDCLQLLAYGNQESKLIILANGGPQALVQIMRNYSYEKLLWTTSRVLK 213
Query: 359 RLAQDMHNQAGIAHNGGLVPLLKLLDSKNGSLQHNAAFALYGLAD 403
L+ N+ I GG+ L K L S + L N + L L+D
Sbjct: 214 VLSVCPSNKPAIVEAGGMQALGKHLTSNSPRLVQNCLWTLRNLSD 258
Score = 34.7 bits (78), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 34/142 (23%), Positives = 58/142 (40%), Gaps = 8/142 (5%)
Query: 153 IVDNGALSHLVNLLKRHMDSNCSRAVNSVIRRAADAITNLAHENSSIKTRVRMEGGIPPL 212
I +G + LV +L S V SV+ A + NL K VR+ G+ +
Sbjct: 99 IFKSGGIPALVRML--------SSPVESVLFYAITTLHNLLLYQEGAKMAVRLADGLQKM 150
Query: 213 VELLEFTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSEDSAIHYEAVGV 272
V LL + K L+ LA+ N E+K I+ L+ ++R+
Sbjct: 151 VPLLNKNNPKFLAITTDCLQLLAYGNQESKLIILANGGPQALVQIMRNYSYEKLLWTTSR 210
Query: 273 IGNLVHSSPNIKKEVLAAGALQ 294
+ ++ P+ K ++ AG +Q
Sbjct: 211 VLKVLSVCPSNKPAIVEAGGMQ 232
>pdb|3SL9|A Chain A, X-Ray Structure Of Beta Catenin In Complex With Bcl9
pdb|3SL9|B Chain B, X-Ray Structure Of Beta Catenin In Complex With Bcl9
pdb|3SL9|E Chain E, X-Ray Structure Of Beta Catenin In Complex With Bcl9
pdb|3SL9|G Chain G, X-Ray Structure Of Beta Catenin In Complex With Bcl9
Length = 167
Score = 39.3 bits (90), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 36/146 (24%), Positives = 64/146 (43%), Gaps = 13/146 (8%)
Query: 181 VIRRAADAITNLAHENSSIKTRVRMEGGIPPLVELLEFT-DTKVQRAAAGALRTLAFKND 239
V+ +AA + L+ + +S +R + +V ++ T D + R AG L L+ +
Sbjct: 29 VVNKAAVMVHQLSKKEASRHAIMRSPQMVSAIVRTMQNTNDVETARCTAGTLHNLSH-HR 87
Query: 240 ENKNQIVECNALPTLILMLRSEDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGL 299
E I + +P L+ ML S ++ + A+ + NL+ K V AG LQ ++ L
Sbjct: 88 EGLLAIFKSGGIPALVKMLGSPVDSVLFYAITTLHNLLLHQEGAKMAVRLAGGLQKMVAL 147
Query: 300 LSSCCSESQREAALLLGQFAATDSDC 325
L+ +F A +DC
Sbjct: 148 LNKTNV-----------KFLAITTDC 162
Score = 31.6 bits (70), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 43/165 (26%), Positives = 65/165 (39%), Gaps = 28/165 (16%)
Query: 76 DRAAAKRATHVLAELAKNEEVVNWIVEG-GAVPALVKHLQAPPTSEADR----NLKPFEH 130
D+ +A ++ +L+K E + I+ V A+V+ +Q E R L H
Sbjct: 26 DQVVVNKAAVMVHQLSKKEASRHAIMRSPQMVSAIVRTMQNTNDVETARCTAGTLHNLSH 85
Query: 131 EVEKGSAFALGLLAVKPEHQQLIVDNGALSHLVNLLKRHMDSNCSRAVNSVIRRAADAIT 190
E GLLA I +G + LV +L V+SV+ A +
Sbjct: 86 HRE-------GLLA--------IFKSGGIPALVKML--------GSPVDSVLFYAITTLH 122
Query: 191 NLAHENSSIKTRVRMEGGIPPLVELLEFTDTKVQRAAAGALRTLA 235
NL K VR+ GG+ +V LL T+ K L+ LA
Sbjct: 123 NLLLHQEGAKMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQILA 167
>pdb|3BCT|A Chain A, The Armadillo Repeat Region From Murine Beta-Catenin
Length = 470
Score = 38.9 bits (89), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 61/244 (25%), Positives = 94/244 (38%), Gaps = 45/244 (18%)
Query: 178 VNSVIRRAADAITNLAHENSSIKTRVRMEGGIPPLVELLEFTDTKVQRAAAGALRTLAFK 237
V+SV+ A + NL K VR+ GG+ V LL T+ K L+ LA+
Sbjct: 56 VDSVLFYAITTLHNLLLHQEGAKXAVRLAGGLQKXVALLNKTNVKFLAITTDCLQILAYG 115
Query: 238 NDENKNQIVECNALPTLILMLRSEDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVI 297
N E+K I+ L+ + R+ YE L+ ++ + K
Sbjct: 116 NQESKLIILASGGPQALVNIXRTYT----YE------KLLWTTSRVLK------------ 153
Query: 298 GLLSSCCSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQSPDVQLREMSAFAL 357
+LS C S K IV+ G + L L P +L + + L
Sbjct: 154 -VLSVCSSN-------------------KPAIVEAGGXQALGLHLTDPSQRLVQNCLWTL 193
Query: 358 GRLAQDMHNQAGIAHNGGLVPLLKLLDSKNGSLQHNAAFALYGL-ADNEDNVADFIRVGG 416
L+ Q G G L L++LL S + ++ AA L L +N N +VGG
Sbjct: 194 RNLSDAATKQEGX--EGLLGTLVQLLGSDDINVVTCAAGILSNLTCNNYKNKXXVCQVGG 251
Query: 417 VQKL 420
++ L
Sbjct: 252 IEAL 255
Score = 36.6 bits (83), Expect = 0.052, Method: Compositional matrix adjust.
Identities = 64/247 (25%), Positives = 100/247 (40%), Gaps = 28/247 (11%)
Query: 180 SVIRRAADAITNLAHENSSIKTRVRMEGGIPPLVE-LLEFTDTK-VQRAAAGALRTLAFK 237
+V+ AA ++NL N K V GGI LV +L D + + A ALR L +
Sbjct: 223 NVVTCAAGILSNLTCNNYKNKXXVCQVGGIEALVRTVLRAGDREDITEPAICALRHLTSR 282
Query: 238 NDEN---KNQIVECNALPTLILMLRSEDSAIHYEA-VGVIGNLVHSSPNIKKEVLAAGAL 293
+ E +N + LP ++ +L +A VG+I NL N + GA+
Sbjct: 283 HQEAEXAQNAVRLHYGLPVVVKLLHPPSHWPLIKATVGLIRNLALCPAN-HAPLREQGAI 341
Query: 294 QPVIGLLSSCCSESQREAAL-------------------LLGQFAATDSDCKVHIVQRG- 333
++ LL ++QR ++ G D IV RG
Sbjct: 342 PRLVQLLVRAHQDTQRRTSMGGTQQQFVEGVRXEEIVEGCTGALHILARDVHNRIVIRGL 401
Query: 334 -AVRPLIEMLQSPDVQLREMSAFALGRLAQDMHNQAGIAHNGGLVPLLKLLDSKNGSLQH 392
+ +++L SP ++ ++A L LAQD I G PL +LL S+N +
Sbjct: 402 NTIPLFVQLLYSPIENIQRVAAGVLCELAQDKEAAEAIEAEGATAPLTELLHSRNEGVAT 461
Query: 393 NAAFALY 399
AA L+
Sbjct: 462 YAAAVLF 468
Score = 35.0 bits (79), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 43/185 (23%), Positives = 75/185 (40%), Gaps = 2/185 (1%)
Query: 220 DTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSEDSAIHYEAVGVIGNLVHS 279
D + R AG L L+ + E I + +P L+ L S ++ + A+ + NL+
Sbjct: 15 DVETARCTAGTLHNLS-HHREGLLAIFKSGGIPALVKXLGSPVDSVLFYAITTLHNLLLH 73
Query: 280 SPNIKKEVLAAGALQPVIGLLSSCCSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLI 339
K V AG LQ + LL+ + L A + + K+ I+ G + L+
Sbjct: 74 QEGAKXAVRLAGGLQKXVALLNKTNVKFLAITTDCLQILAYGNQESKLIILASGGPQALV 133
Query: 340 EMLQSPDVQ-LREMSAFALGRLAQDMHNQAGIAHNGGLVPLLKLLDSKNGSLQHNAAFAL 398
+ ++ + L ++ L L+ N+ I GG L L + L N + L
Sbjct: 134 NIXRTYTYEKLLWTTSRVLKVLSVCSSNKPAIVEAGGXQALGLHLTDPSQRLVQNCLWTL 193
Query: 399 YGLAD 403
L+D
Sbjct: 194 RNLSD 198
>pdb|2IHC|A Chain A, Crystal Structure Of The Bric-A-Brac (Btb) Domain Of Human
Bach1
pdb|2IHC|B Chain B, Crystal Structure Of The Bric-A-Brac (Btb) Domain Of Human
Bach1
pdb|2IHC|C Chain C, Crystal Structure Of The Bric-A-Brac (Btb) Domain Of Human
Bach1
pdb|2IHC|D Chain D, Crystal Structure Of The Bric-A-Brac (Btb) Domain Of Human
Bach1
Length = 124
Score = 38.5 bits (88), Expect = 0.014, Method: Composition-based stats.
Identities = 25/92 (27%), Positives = 46/92 (50%), Gaps = 3/92 (3%)
Query: 549 LSDVTFLVEGRRFYAHRICLLASSDAFRAMFDGGYREKDARDIEIP-NIRWEVFELMMRF 607
L DVT VEG+RF AHR L A S F + G + +I +P + + FE +++F
Sbjct: 29 LCDVTIFVEGQRFRAHRSVLAACSSYFHSRIVG--QADGELNITLPEEVTVKGFEPLIQF 86
Query: 608 IYTGSVDVTLDIAQDLLRAADQYLLEGLKRLC 639
YT + ++ + ++ + + + ++ C
Sbjct: 87 AYTAKLILSKENVDEVCKCVEFLSVHNIEESC 118
>pdb|1R28|A Chain A, Crystal Structure Of The B-Cell Lymphoma 6 (Bcl6) Btb
Domain To 2.2 Angstrom
pdb|1R28|B Chain B, Crystal Structure Of The B-Cell Lymphoma 6 (Bcl6) Btb
Domain To 2.2 Angstrom
pdb|1R29|A Chain A, Crystal Structure Of The B-cell Lymphoma 6 (bcl6) Btb
Domain To 1.3 Angstrom
pdb|1R2B|A Chain A, Crystal Structure Of The Bcl6 Btb Domain Complexed With A
Smrt Co-Repressor Peptide
pdb|1R2B|B Chain B, Crystal Structure Of The Bcl6 Btb Domain Complexed With A
Smrt Co-Repressor Peptide
pdb|3BIM|A Chain A, Crystal Structure Of The Bcl6 Btb Domain Dimer In Complex
With The Bcor Bbd Corepressor Peptide
pdb|3BIM|B Chain B, Crystal Structure Of The Bcl6 Btb Domain Dimer In Complex
With The Bcor Bbd Corepressor Peptide
pdb|3BIM|C Chain C, Crystal Structure Of The Bcl6 Btb Domain Dimer In Complex
With The Bcor Bbd Corepressor Peptide
pdb|3BIM|D Chain D, Crystal Structure Of The Bcl6 Btb Domain Dimer In Complex
With The Bcor Bbd Corepressor Peptide
pdb|3BIM|E Chain E, Crystal Structure Of The Bcl6 Btb Domain Dimer In Complex
With The Bcor Bbd Corepressor Peptide
pdb|3BIM|F Chain F, Crystal Structure Of The Bcl6 Btb Domain Dimer In Complex
With The Bcor Bbd Corepressor Peptide
pdb|3BIM|G Chain G, Crystal Structure Of The Bcl6 Btb Domain Dimer In Complex
With The Bcor Bbd Corepressor Peptide
pdb|3BIM|H Chain H, Crystal Structure Of The Bcl6 Btb Domain Dimer In Complex
With The Bcor Bbd Corepressor Peptide
pdb|3LBZ|A Chain A, Crystal Structure Of The Bcl6 Btb Domain Complexed With
The Molecule Inhibitor 79-6
pdb|3LBZ|B Chain B, Crystal Structure Of The Bcl6 Btb Domain Complexed With
The Molecule Inhibitor 79-6
Length = 127
Score = 35.4 bits (80), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 21/68 (30%), Positives = 38/68 (55%), Gaps = 2/68 (2%)
Query: 549 LSDVTFLVEGRRFYAHRICLLASSDAFRAMF-DGGYREKDARDIEIPNIRWEVFELMMRF 607
L+DV +V +F AH+ L+A S F ++F D R +++ P I E F +++ F
Sbjct: 29 LTDVVIVVSREQFRAHKTVLMACSGLFYSIFTDQLKRNLSVINLD-PEINPEGFNILLDF 87
Query: 608 IYTGSVDV 615
+YT +++
Sbjct: 88 MYTSRLNL 95
>pdb|2VPK|A Chain A, Crystal Structure Of The Btb Domain Of Human Myoneurin
Length = 116
Score = 35.4 bits (80), Expect = 0.10, Method: Composition-based stats.
Identities = 24/94 (25%), Positives = 50/94 (53%), Gaps = 6/94 (6%)
Query: 549 LSDVTFLVEGRRFYAHRICLLASSDAFRAMFDGGYREKDARDI--EIPNIRWEVFELMMR 606
L D T ++ +F AHR L + S+ F A+ YR ++ + ++ + F+ ++
Sbjct: 22 LCDCTIVIGEFQFKAHRNVLASFSEYFGAI----YRSTSENNVFLDQSQVKADGFQKLLE 77
Query: 607 FIYTGSVDVTLDIAQDLLRAADQYLLEGLKRLCE 640
FIYTG++++ +++ +AAD +E + C+
Sbjct: 78 FIYTGTLNLDSWNVKEIHQAADYLKVEEVVTKCK 111
>pdb|3OHU|A Chain A, Crystal Structure Of The Human Bach2 Poz Domain, Form I
pdb|3OHU|B Chain B, Crystal Structure Of The Human Bach2 Poz Domain, Form I
pdb|3OHU|C Chain C, Crystal Structure Of The Human Bach2 Poz Domain, Form I
pdb|3OHU|D Chain D, Crystal Structure Of The Human Bach2 Poz Domain, Form I
pdb|3OHU|E Chain E, Crystal Structure Of The Human Bach2 Poz Domain, Form I
pdb|3OHU|F Chain F, Crystal Structure Of The Human Bach2 Poz Domain, Form I
pdb|3OHV|A Chain A, Crystal Structure Of The Human Bach2 Poz Domain, Form Ii
pdb|3OHV|B Chain B, Crystal Structure Of The Human Bach2 Poz Domain, Form Ii
pdb|3OHV|C Chain C, Crystal Structure Of The Human Bach2 Poz Domain, Form Ii
pdb|3OHV|D Chain D, Crystal Structure Of The Human Bach2 Poz Domain, Form Ii
pdb|3OHV|E Chain E, Crystal Structure Of The Human Bach2 Poz Domain, Form Ii
pdb|3OHV|F Chain F, Crystal Structure Of The Human Bach2 Poz Domain, Form Ii
Length = 125
Score = 35.0 bits (79), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 25/92 (27%), Positives = 47/92 (51%), Gaps = 3/92 (3%)
Query: 549 LSDVTFLVEGRRFYAHRICLLASSDAFRAMFDGGYREKDARDIEIP-NIRWEVFELMMRF 607
L DVT +VE + F AHR L A S+ F G + K+ + +P + F +++F
Sbjct: 32 LCDVTLIVERKEFRAHRAVLAACSEYFWQALVG--QTKNDLVVSLPEEVTARGFGPLLQF 89
Query: 608 IYTGSVDVTLDIAQDLLRAADQYLLEGLKRLC 639
YT + ++ + ++++R A+ + L+ C
Sbjct: 90 AYTAKLLLSRENIREVIRCAEFLRMHNLEDSC 121
>pdb|3AU3|A Chain A, Crystal Structure Of Armadillo Repeat Domain Of Apc
Length = 344
Score = 33.9 bits (76), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 34/131 (25%), Positives = 61/131 (46%), Gaps = 8/131 (6%)
Query: 180 SVIRRAADAITNL-AHENSSIKTRVRMEGGIPPLVELLEF---TDT-KVQRAAAGALR-- 232
S ++ A+ NL AH + ++G + LV L + T+T + + G LR
Sbjct: 195 STLKSVLSALWNLSAHCTENKADICAVDGALAFLVGTLTYRSQTNTLAIIESGGGILRNV 254
Query: 233 -TLAFKNDENKNQIVECNALPTLILMLRSEDSAIHYEAVGVIGNLVHSSPNIKKEVLAAG 291
+L N++++ + E N L TL+ L+S I A G + NL +P ++ + G
Sbjct: 255 SSLIATNEDHRQILRENNCLQTLLQHLKSHSLTIVSNACGTLWNLSARNPKDQEALWDXG 314
Query: 292 ALQPVIGLLSS 302
A+ + L+ S
Sbjct: 315 AVSXLKNLIHS 325
Score = 31.6 bits (70), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 22/93 (23%), Positives = 40/93 (43%), Gaps = 8/93 (8%)
Query: 142 LLAVKPEHQQLIVDNGALSHLVNLLKRHMDSNCSRAVNSVIRRAADAITNLAHENSSIKT 201
L+A +H+Q++ +N L L+ LK H +++ A + NL+ N +
Sbjct: 257 LIATNEDHRQILRENNCLQTLLQHLKSHSL--------TIVSNACGTLWNLSARNPKDQE 308
Query: 202 RVRMEGGIPPLVELLEFTDTKVQRAAAGALRTL 234
+ G + L L+ + +A ALR L
Sbjct: 309 ALWDXGAVSXLKNLIHSKHKXIAXGSAAALRNL 341
>pdb|3B84|A Chain A, Crystal Structure Of The Human Btb Domain Of The Krueppel
Related Zinc Finger Protein 3 (Hkr3)
Length = 119
Score = 33.5 bits (75), Expect = 0.38, Method: Composition-based stats.
Identities = 25/90 (27%), Positives = 40/90 (44%), Gaps = 4/90 (4%)
Query: 551 DVTFLVEGRRFYAHRICLLASSDAFRAMFDGGYREKDARDIEIPNIRWEVFELMMRFIYT 610
D T V G F AH L S F++++ G + +P E+F L++ F YT
Sbjct: 26 DATLDVGGLVFKAHWSVLACCSHFFQSLYGDG----SGGSVVLPAGFAEIFGLLLDFFYT 81
Query: 611 GSVDVTLDIAQDLLRAADQYLLEGLKRLCE 640
G + +T +L AA + + LC+
Sbjct: 82 GHLALTSGNRDQVLLAARELRVPEAVELCQ 111
>pdb|3NMW|A Chain A, Crytal Structure Of Armadillo Repeats Domain Of Apc
pdb|3NMW|B Chain B, Crytal Structure Of Armadillo Repeats Domain Of Apc
Length = 354
Score = 33.5 bits (75), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 34/131 (25%), Positives = 61/131 (46%), Gaps = 8/131 (6%)
Query: 180 SVIRRAADAITNL-AHENSSIKTRVRMEGGIPPLVELLEF---TDT-KVQRAAAGALR-- 232
S ++ A+ NL AH + ++G + LV L + T+T + + G LR
Sbjct: 186 STLKSVLSALWNLSAHCTENKADICAVDGALAFLVGTLTYRSQTNTLAIIESGGGILRNV 245
Query: 233 -TLAFKNDENKNQIVECNALPTLILMLRSEDSAIHYEAVGVIGNLVHSSPNIKKEVLAAG 291
+L N++++ + E N L TL+ L+S I A G + NL +P ++ + G
Sbjct: 246 SSLIATNEDHRQILRENNCLQTLLQHLKSHSLTIVSNACGTLWNLSARNPKDQEALWDXG 305
Query: 292 ALQPVIGLLSS 302
A+ + L+ S
Sbjct: 306 AVSXLKNLIHS 316
Score = 31.6 bits (70), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 22/93 (23%), Positives = 40/93 (43%), Gaps = 8/93 (8%)
Query: 142 LLAVKPEHQQLIVDNGALSHLVNLLKRHMDSNCSRAVNSVIRRAADAITNLAHENSSIKT 201
L+A +H+Q++ +N L L+ LK H +++ A + NL+ N +
Sbjct: 248 LIATNEDHRQILRENNCLQTLLQHLKSHSL--------TIVSNACGTLWNLSARNPKDQE 299
Query: 202 RVRMEGGIPPLVELLEFTDTKVQRAAAGALRTL 234
+ G + L L+ + +A ALR L
Sbjct: 300 ALWDXGAVSXLKNLIHSKHKXIAXGSAAALRNL 332
>pdb|3QHE|A Chain A, Crystal Structure Of The Complex Between The Armadillo
Repeat Domain Of Adenomatous Polyposis Coli And The
Tyrosine-Rich Domain Of Sam68
pdb|3QHE|C Chain C, Crystal Structure Of The Complex Between The Armadillo
Repeat Domain Of Adenomatous Polyposis Coli And The
Tyrosine-Rich Domain Of Sam68
Length = 337
Score = 33.5 bits (75), Expect = 0.48, Method: Compositional matrix adjust.
Identities = 34/131 (25%), Positives = 61/131 (46%), Gaps = 8/131 (6%)
Query: 180 SVIRRAADAITNL-AHENSSIKTRVRMEGGIPPLVELLEF---TDT-KVQRAAAGALR-- 232
S ++ A+ NL AH + ++G + LV L + T+T + + G LR
Sbjct: 188 STLKSVLSALWNLSAHCTENKADICAVDGALAFLVGTLTYRSQTNTLAIIESGGGILRNV 247
Query: 233 -TLAFKNDENKNQIVECNALPTLILMLRSEDSAIHYEAVGVIGNLVHSSPNIKKEVLAAG 291
+L N++++ + E N L TL+ L+S I A G + NL +P ++ + G
Sbjct: 248 SSLIATNEDHRQILRENNCLQTLLQHLKSHSLTIVSNACGTLWNLSARNPKDQEALWDMG 307
Query: 292 ALQPVIGLLSS 302
A+ + L+ S
Sbjct: 308 AVSMLKNLIHS 318
Score = 29.6 bits (65), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 22/93 (23%), Positives = 40/93 (43%), Gaps = 8/93 (8%)
Query: 142 LLAVKPEHQQLIVDNGALSHLVNLLKRHMDSNCSRAVNSVIRRAADAITNLAHENSSIKT 201
L+A +H+Q++ +N L L+ LK H +++ A + NL+ N +
Sbjct: 250 LIATNEDHRQILRENNCLQTLLQHLKSH--------SLTIVSNACGTLWNLSARNPKDQE 301
Query: 202 RVRMEGGIPPLVELLEFTDTKVQRAAAGALRTL 234
+ G + L L+ + +A ALR L
Sbjct: 302 ALWDMGAVSMLKNLIHSKHKMIAMGSAAALRNL 334
>pdb|3T7U|A Chain A, A New Crytal Structure Of Apc-Arm
pdb|3T7U|B Chain B, A New Crytal Structure Of Apc-Arm
Length = 378
Score = 33.1 bits (74), Expect = 0.53, Method: Compositional matrix adjust.
Identities = 34/131 (25%), Positives = 61/131 (46%), Gaps = 8/131 (6%)
Query: 180 SVIRRAADAITNL-AHENSSIKTRVRMEGGIPPLVELLEF---TDT-KVQRAAAGALR-- 232
S ++ A+ NL AH + ++G + LV L + T+T + + G LR
Sbjct: 186 STLKSVLSALWNLSAHCTENKADICAVDGALAFLVGTLTYRSQTNTLAIIESGGGILRNV 245
Query: 233 -TLAFKNDENKNQIVECNALPTLILMLRSEDSAIHYEAVGVIGNLVHSSPNIKKEVLAAG 291
+L N++++ + E N L TL+ L+S I A G + NL +P ++ + G
Sbjct: 246 SSLIATNEDHRQILRENNCLQTLLQHLKSHSLTIVSNACGTLWNLSARNPKDQEALWDMG 305
Query: 292 ALQPVIGLLSS 302
A+ + L+ S
Sbjct: 306 AVSMLKNLIHS 316
Score = 30.0 bits (66), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 22/93 (23%), Positives = 40/93 (43%), Gaps = 8/93 (8%)
Query: 142 LLAVKPEHQQLIVDNGALSHLVNLLKRHMDSNCSRAVNSVIRRAADAITNLAHENSSIKT 201
L+A +H+Q++ +N L L+ LK H +++ A + NL+ N +
Sbjct: 248 LIATNEDHRQILRENNCLQTLLQHLKSH--------SLTIVSNACGTLWNLSARNPKDQE 299
Query: 202 RVRMEGGIPPLVELLEFTDTKVQRAAAGALRTL 234
+ G + L L+ + +A ALR L
Sbjct: 300 ALWDMGAVSMLKNLIHSKHKMIAMGSAAALRNL 332
>pdb|3NMZ|A Chain A, Crytal Structure Of Apc Complexed With Asef
pdb|3NMZ|B Chain B, Crytal Structure Of Apc Complexed With Asef
Length = 458
Score = 33.1 bits (74), Expect = 0.55, Method: Compositional matrix adjust.
Identities = 34/131 (25%), Positives = 61/131 (46%), Gaps = 8/131 (6%)
Query: 180 SVIRRAADAITNL-AHENSSIKTRVRMEGGIPPLVELLEF---TDT-KVQRAAAGALR-- 232
S ++ A+ NL AH + ++G + LV L + T+T + + G LR
Sbjct: 302 STLKSVLSALWNLSAHCTENKADICAVDGALAFLVGTLTYRSQTNTLAIIESGGGILRNV 361
Query: 233 -TLAFKNDENKNQIVECNALPTLILMLRSEDSAIHYEAVGVIGNLVHSSPNIKKEVLAAG 291
+L N++++ + E N L TL+ L+S I A G + NL +P ++ + G
Sbjct: 362 SSLIATNEDHRQILRENNCLQTLLQHLKSHSLTIVSNACGTLWNLSARNPKDQEALWDMG 421
Query: 292 ALQPVIGLLSS 302
A+ + L+ S
Sbjct: 422 AVSMLKNLIHS 432
Score = 29.6 bits (65), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 22/93 (23%), Positives = 40/93 (43%), Gaps = 8/93 (8%)
Query: 142 LLAVKPEHQQLIVDNGALSHLVNLLKRHMDSNCSRAVNSVIRRAADAITNLAHENSSIKT 201
L+A +H+Q++ +N L L+ LK H +++ A + NL+ N +
Sbjct: 364 LIATNEDHRQILRENNCLQTLLQHLKSH--------SLTIVSNACGTLWNLSARNPKDQE 415
Query: 202 RVRMEGGIPPLVELLEFTDTKVQRAAAGALRTL 234
+ G + L L+ + +A ALR L
Sbjct: 416 ALWDMGAVSMLKNLIHSKHKMIAMGSAAALRNL 448
>pdb|3E4U|A Chain A, Crystal Structure Of The Wild-Type Human Bcl6 BtbPOZ
DOMAIN
pdb|3E4U|B Chain B, Crystal Structure Of The Wild-Type Human Bcl6 BtbPOZ
DOMAIN
pdb|3E4U|C Chain C, Crystal Structure Of The Wild-Type Human Bcl6 BtbPOZ
DOMAIN
pdb|3E4U|D Chain D, Crystal Structure Of The Wild-Type Human Bcl6 BtbPOZ
DOMAIN
pdb|3E4U|E Chain E, Crystal Structure Of The Wild-Type Human Bcl6 BtbPOZ
DOMAIN
pdb|3E4U|F Chain F, Crystal Structure Of The Wild-Type Human Bcl6 BtbPOZ
DOMAIN
Length = 130
Score = 33.1 bits (74), Expect = 0.57, Method: Compositional matrix adjust.
Identities = 19/67 (28%), Positives = 35/67 (52%)
Query: 549 LSDVTFLVEGRRFYAHRICLLASSDAFRAMFDGGYREKDARDIEIPNIRWEVFELMMRFI 608
L+DV +V +F AH+ L+A S F ++F + + P I E F +++ F+
Sbjct: 32 LTDVVIVVSREQFRAHKTVLMACSGLFYSIFTDQLKCNLSVINLDPEINPEGFCILLDFM 91
Query: 609 YTGSVDV 615
YT +++
Sbjct: 92 YTSRLNL 98
>pdb|1XQS|A Chain A, Crystal Structure Of The Hspbp1 Core Domain Complexed With
The Fragment Of Hsp70 Atpase Domain
pdb|1XQS|B Chain B, Crystal Structure Of The Hspbp1 Core Domain Complexed With
The Fragment Of Hsp70 Atpase Domain
Length = 280
Score = 33.1 bits (74), Expect = 0.59, Method: Compositional matrix adjust.
Identities = 25/111 (22%), Positives = 50/111 (45%)
Query: 177 AVNSVIRRAADAITNLAHENSSIKTRVRMEGGIPPLVELLEFTDTKVQRAAAGALRTLAF 236
A ++V +A AI+ L E + + G L+ ++ K++ +A L+ L
Sbjct: 121 ACDTVRVKALFAISCLVREQEAGLLQFLRLDGFSVLMRAMQQQVQKLKVKSAFLLQNLLV 180
Query: 237 KNDENKNQIVECNALPTLILMLRSEDSAIHYEAVGVIGNLVHSSPNIKKEV 287
+ E+K + + L+ ++R+E S H +G + +LV P +E
Sbjct: 181 GHPEHKGTLCSMGMVQQLVALVRTEHSPFHEHVLGALCSLVTDFPQGVREC 231
>pdb|3NMX|A Chain A, Crystal Structure Of Apc Complexed With Asef
pdb|3NMX|B Chain B, Crystal Structure Of Apc Complexed With Asef
pdb|3NMX|C Chain C, Crystal Structure Of Apc Complexed With Asef
Length = 354
Score = 32.7 bits (73), Expect = 0.65, Method: Compositional matrix adjust.
Identities = 34/131 (25%), Positives = 61/131 (46%), Gaps = 8/131 (6%)
Query: 180 SVIRRAADAITNL-AHENSSIKTRVRMEGGIPPLVELLEF---TDT-KVQRAAAGALR-- 232
S ++ A+ NL AH + ++G + LV L + T+T + + G LR
Sbjct: 186 STLKSVLSALWNLSAHCTENKADICAVDGALAFLVGTLTYRSQTNTLAIIESGGGILRNV 245
Query: 233 -TLAFKNDENKNQIVECNALPTLILMLRSEDSAIHYEAVGVIGNLVHSSPNIKKEVLAAG 291
+L N++++ + E N L TL+ L+S I A G + NL +P ++ + G
Sbjct: 246 SSLIATNEDHRQILRENNCLQTLLQHLKSHSLTIVSNACGTLWNLSARNPKDQEALWDMG 305
Query: 292 ALQPVIGLLSS 302
A+ + L+ S
Sbjct: 306 AVSMLKNLIHS 316
Score = 30.0 bits (66), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 22/93 (23%), Positives = 40/93 (43%), Gaps = 8/93 (8%)
Query: 142 LLAVKPEHQQLIVDNGALSHLVNLLKRHMDSNCSRAVNSVIRRAADAITNLAHENSSIKT 201
L+A +H+Q++ +N L L+ LK H +++ A + NL+ N +
Sbjct: 248 LIATNEDHRQILRENNCLQTLLQHLKSH--------SLTIVSNACGTLWNLSARNPKDQE 299
Query: 202 RVRMEGGIPPLVELLEFTDTKVQRAAAGALRTL 234
+ G + L L+ + +A ALR L
Sbjct: 300 ALWDMGAVSMLKNLIHSKHKMIAMGSAAALRNL 332
>pdb|3M0Z|A Chain A, Crystal Structure Of Putative Aldolase From Klebsiella
Pneumoniae.
pdb|3M0Z|B Chain B, Crystal Structure Of Putative Aldolase From Klebsiella
Pneumoniae.
pdb|3M0Z|C Chain C, Crystal Structure Of Putative Aldolase From Klebsiella
Pneumoniae.
pdb|3M0Z|D Chain D, Crystal Structure Of Putative Aldolase From Klebsiella
Pneumoniae
Length = 249
Score = 32.7 bits (73), Expect = 0.74, Method: Compositional matrix adjust.
Identities = 25/83 (30%), Positives = 36/83 (43%), Gaps = 12/83 (14%)
Query: 52 RQALLSEVSAQVNV--LNTTFSWLEADRAAAKRATHVLAELAKNEEVVNWIVEGGAVPAL 109
+ A +SE+S QV +N F+ + RA L +NE VVN +V P
Sbjct: 79 QSAXVSEISRQVQPQHVNQVFTGVATSRAL----------LGQNETVVNGLVSPTGTPGX 128
Query: 110 VKHLQAPPTSEADRNLKPFEHEV 132
VK P +S A + P E +
Sbjct: 129 VKISTGPLSSGAADGIVPLETAI 151
>pdb|2YY9|A Chain A, Crystal Structure Of Btb Domain From Mouse Hkr3
pdb|2YY9|B Chain B, Crystal Structure Of Btb Domain From Mouse Hkr3
Length = 135
Score = 32.3 bits (72), Expect = 1.1, Method: Composition-based stats.
Identities = 25/90 (27%), Positives = 39/90 (43%), Gaps = 4/90 (4%)
Query: 551 DVTFLVEGRRFYAHRICLLASSDAFRAMFDGGYREKDARDIEIPNIRWEVFELMMRFIYT 610
D T V G F AH L S F+ ++ G + +P E+F L++ F YT
Sbjct: 27 DATLDVGGLVFKAHWSVLACCSHFFQRIYGDG----TGGSVVLPAGFAEIFGLLLDFFYT 82
Query: 611 GSVDVTLDIAQDLLRAADQYLLEGLKRLCE 640
G + +T +L AA + + LC+
Sbjct: 83 GHLALTSGNRDQVLLAAKELRVPEAVELCQ 112
>pdb|1UKL|A Chain A, Crystal Structure Of Importin-Beta And Srebp-2 Complex
pdb|1UKL|B Chain B, Crystal Structure Of Importin-Beta And Srebp-2 Complex
Length = 876
Score = 32.0 bits (71), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 24/80 (30%), Positives = 43/80 (53%), Gaps = 5/80 (6%)
Query: 334 AVRPLIEMLQSPDVQLREMSAFALGRLAQDMHNQAGIAHNGGLVPLLKLLD---SKNGSL 390
A+ LIE+++ P V +R+ +A+ +GR+ + + +A I ++ L PLL+ L S +
Sbjct: 409 AMPTLIELMKDPSVVVRDTTAWTVGRICE-LLPEAAI-NDVYLAPLLQCLIEGLSAEPRV 466
Query: 391 QHNAAFALYGLADNEDNVAD 410
N +A LA+ AD
Sbjct: 467 ASNVCWAFSSLAEAAYEAAD 486
>pdb|1M5N|S Chain S, Crystal Structure Of Heat Repeats (1-11) Of Importin B
Bound To The Non-Classical Nls(67-94) Of Pthrp
Length = 485
Score = 32.0 bits (71), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 22/73 (30%), Positives = 41/73 (56%), Gaps = 5/73 (6%)
Query: 334 AVRPLIEMLQSPDVQLREMSAFALGRLAQDMHNQAGIAHNGGLVPLLKLLD---SKNGSL 390
A+ LIE+++ P V +R+ +A+ +GR+ ++ +A I ++ L PLL+ L S +
Sbjct: 409 AMPTLIELMKDPSVVVRDTAAWTVGRIC-ELLPEAAI-NDVYLAPLLQCLIEGLSAEPRV 466
Query: 391 QHNAAFALYGLAD 403
N +A LA+
Sbjct: 467 ASNVCWAFSSLAE 479
>pdb|2P8Q|A Chain A, Crystal Structure Of Human Importin Beta Bound To The
Snurportin1 Ibb- Domain
pdb|2Q5D|A Chain A, Crystal Structure Of Human Importin Beta Bound To The
Snurportin1 Ibb-Domain Second Crystal Form
pdb|2Q5D|B Chain B, Crystal Structure Of Human Importin Beta Bound To The
Snurportin1 Ibb-Domain Second Crystal Form
pdb|3LWW|A Chain A, Structure Of An Open And Closed Conformation Of Human
Importin Beta Bound To The Snurportin1 Ibb-Domain
Trapped In The Same Crystallographic Asymmetric Unit
pdb|3LWW|C Chain C, Structure Of An Open And Closed Conformation Of Human
Importin Beta Bound To The Snurportin1 Ibb-Domain
Trapped In The Same Crystallographic Asymmetric Unit
Length = 876
Score = 32.0 bits (71), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 24/80 (30%), Positives = 43/80 (53%), Gaps = 5/80 (6%)
Query: 334 AVRPLIEMLQSPDVQLREMSAFALGRLAQDMHNQAGIAHNGGLVPLLKLLD---SKNGSL 390
A+ LIE+++ P V +R+ +A+ +GR+ + + +A I ++ L PLL+ L S +
Sbjct: 409 AMPTLIELMKDPSVVVRDTAAWTVGRICE-LLPEAAI-NDVYLAPLLQCLIEGLSAEPRV 466
Query: 391 QHNAAFALYGLADNEDNVAD 410
N +A LA+ AD
Sbjct: 467 ASNVCWAFSSLAEAAYEAAD 486
>pdb|1QGK|A Chain A, Structure Of Importin Beta Bound To The Ibb Domain Of
Importin Alpha
pdb|1QGR|A Chain A, Structure Of Importin Beta Bound To The Ibb Domain Of
Importin Alpha (Ii Crystal Form, Grown At Low Ph)
Length = 876
Score = 32.0 bits (71), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 24/80 (30%), Positives = 43/80 (53%), Gaps = 5/80 (6%)
Query: 334 AVRPLIEMLQSPDVQLREMSAFALGRLAQDMHNQAGIAHNGGLVPLLKLLD---SKNGSL 390
A+ LIE+++ P V +R+ +A+ +GR+ + + +A I ++ L PLL+ L S +
Sbjct: 409 AMPTLIELMKDPSVVVRDTAAWTVGRICE-LLPEAAI-NDVYLAPLLQCLIEGLSAEPRV 466
Query: 391 QHNAAFALYGLADNEDNVAD 410
N +A LA+ AD
Sbjct: 467 ASNVCWAFSSLAEAAYEAAD 486
>pdb|2QNA|A Chain A, Crystal Structure Of Human Importin-Beta (127-876) In
Complex With The Ibb-Domain Of Snurportin1 (1-65)
Length = 762
Score = 31.6 bits (70), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 23/80 (28%), Positives = 41/80 (51%), Gaps = 5/80 (6%)
Query: 334 AVRPLIEMLQSPDVQLREMSAFALGRLAQDMHNQAGIAHNGGLVPLLKLLD---SKNGSL 390
A+ LIE+++ P V +R+ +A+ +GR+ + + A ++ L PLL+ L S +
Sbjct: 284 AMPTLIELMKDPSVVVRDTAAWTVGRICELLPEAA--INDVYLAPLLQCLIEGLSAEPRV 341
Query: 391 QHNAAFALYGLADNEDNVAD 410
N +A LA+ AD
Sbjct: 342 ASNVCWAFSSLAEAAYEAAD 361
>pdb|3NOW|A Chain A, Unc-45 From Drosophila Melanogaster
Length = 810
Score = 31.6 bits (70), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 28/113 (24%), Positives = 46/113 (40%)
Query: 188 AITNLAHENSSIKTRVRMEGGIPPLVELLEFTDTKVQRAAAGALRTLAFKNDENKNQIVE 247
A+TNLA N S++ R+ E G+ + L + RAAA L L D K
Sbjct: 604 ALTNLASMNESVRQRIIKEQGVSKIEYYLMEDHLYLTRAAAQCLCNLVMSEDVIKMFEGN 663
Query: 248 CNALPTLILMLRSEDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLL 300
+ + L L+ ED G + + S +++LA + ++ L
Sbjct: 664 NDRVKFLALLCEDEDEETATACAGALAIITSVSVKCCEKILAIASWLDILHTL 716
>pdb|1XQR|A Chain A, Crystal Structure Of The Hspbp1 Core Domain
pdb|1XQR|B Chain B, Crystal Structure Of The Hspbp1 Core Domain
Length = 296
Score = 30.8 bits (68), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 25/111 (22%), Positives = 48/111 (43%)
Query: 177 AVNSVIRRAADAITNLAHENSSIKTRVRMEGGIPPLVELLEFTDTKVQRAAAGALRTLAF 236
A ++V +A AI+ L E + + G L + K++ +A L+ L
Sbjct: 137 ACDTVRVKALFAISCLVREQEAGLLQFLRLDGFSVLXRAXQQQVQKLKVKSAFLLQNLLV 196
Query: 237 KNDENKNQIVECNALPTLILMLRSEDSAIHYEAVGVIGNLVHSSPNIKKEV 287
+ E+K + + L+ ++R+E S H +G + +LV P +E
Sbjct: 197 GHPEHKGTLCSXGXVQQLVALVRTEHSPFHEHVLGALCSLVTDFPQGVREC 247
>pdb|3HVE|A Chain A, Structures Of Spop-Substrate Complexes: Insights Into
Molecular Architectures Of Btb-Cul3 Ubiquitin Ligases:
Gigaxoninbtb3-Box
Length = 256
Score = 30.4 bits (67), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 33/144 (22%), Positives = 63/144 (43%), Gaps = 2/144 (1%)
Query: 543 FVNNATLSDVTFLVEGRRFYAHRICLLASSDAFRAMFDGGYREKDAR--DIEIPNIRWEV 600
F + D +++G + L A+S R + + D IE+ I V
Sbjct: 25 FREESRFCDAHLVLDGEEIPVQKNILAAASPYIRTKLNYNPPKDDGSTYKIELEGISVXV 84
Query: 601 FELMMRFIYTGSVDVTLDIAQDLLRAADQYLLEGLKRLCEYTIAQDISLENVSSMYELSE 660
++ +I++G + + D QD+++AAD LL LK LC + I+ EN + + +
Sbjct: 85 XREILDYIFSGQIRLNEDTIQDVVQAADLLLLTDLKTLCCEFLEGCIAAENCIGIRDFAL 144
Query: 661 AFHAISLRHTCILYIMEHFDKLST 684
+ + + Y+ HF +S+
Sbjct: 145 HYCLHHVHYLATEYLETHFRDVSS 168
>pdb|1TE4|A Chain A, Solution Structure Of Mth187. Ontario Centre For
Structural Proteomics Target Mth0187_1_111; Northeast
Structural Genomics Target Tt740
Length = 131
Score = 30.0 bits (66), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 20/65 (30%), Positives = 34/65 (52%), Gaps = 10/65 (15%)
Query: 334 AVRPLIEMLQSPDVQLREMSAFALGRLAQDMHNQAGIAHNGGLVPLLKLLDSKNGSLQHN 393
A PL+E L + D ++R +A+ +G QD + PL+KLL+ +G ++
Sbjct: 43 AFEPLLESLSNEDWRIRGAAAWIIGNF-QDER---------AVEPLIKLLEDDSGFVRSG 92
Query: 394 AAFAL 398
AA +L
Sbjct: 93 AARSL 97
>pdb|3HVE|B Chain B, Structures Of Spop-Substrate Complexes: Insights Into
Molecular Architectures Of Btb-Cul3 Ubiquitin Ligases:
Gigaxoninbtb3-Box
Length = 256
Score = 29.6 bits (65), Expect = 6.8, Method: Compositional matrix adjust.
Identities = 35/144 (24%), Positives = 60/144 (41%), Gaps = 14/144 (9%)
Query: 543 FVNNATLSDVTFLVEGRRFYAHRICLLASSDAFRAMFDGGYREKDAR--DIEIPNIRWEV 600
F + D +++G + L A+S R + + D IE+ I V
Sbjct: 25 FREESRFCDAHLVLDGEEIPVQKNILAAASPYIRTKLNYNPPKDDGSTYKIELEGISVXV 84
Query: 601 FELMMRFIYTGSVDVTLDIAQDLLRAADQYLLEGLKRLCEYTIAQDISLENVSSMYELSE 660
++ +I++G + + D QD+++AAD LL LK LC + I+ EN
Sbjct: 85 XREILDYIFSGQIRLNEDTIQDVVQAADLLLLTDLKTLCCEFLEGCIAAEN--------- 135
Query: 661 AFHAISLRHTCILYIMEHFDKLST 684
I +R + Y + H L+T
Sbjct: 136 ---CIGIRDFALHYCLHHVHYLAT 156
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.319 0.133 0.379
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 18,642,401
Number of Sequences: 62578
Number of extensions: 691441
Number of successful extensions: 2395
Number of sequences better than 100.0: 100
Number of HSP's better than 100.0 without gapping: 82
Number of HSP's successfully gapped in prelim test: 18
Number of HSP's that attempted gapping in prelim test: 1793
Number of HSP's gapped (non-prelim): 289
length of query: 717
length of database: 14,973,337
effective HSP length: 106
effective length of query: 611
effective length of database: 8,340,069
effective search space: 5095782159
effective search space used: 5095782159
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 55 (25.8 bits)