Query 005044
Match_columns 717
No_of_seqs 581 out of 4047
Neff 10.6
Searched_HMMs 46136
Date Thu Mar 28 17:08:44 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/005044.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/005044hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03200 cellulose synthase-in 100.0 6.1E-37 1.3E-41 351.8 45.1 447 58-521 190-767 (2102)
2 PLN03200 cellulose synthase-in 100.0 3.5E-35 7.6E-40 337.5 43.9 433 57-519 144-681 (2102)
3 KOG0166 Karyopherin (importin) 100.0 5.8E-36 1.3E-40 299.8 29.5 324 56-403 108-436 (514)
4 KOG0166 Karyopherin (importin) 100.0 2.7E-35 5.9E-40 295.0 32.1 403 59-519 68-487 (514)
5 COG5064 SRP1 Karyopherin (impo 100.0 7.7E-36 1.7E-40 274.8 21.9 376 55-476 112-495 (526)
6 COG5064 SRP1 Karyopherin (impo 100.0 1E-35 2.3E-40 273.9 20.8 418 54-525 68-503 (526)
7 KOG4224 Armadillo repeat prote 100.0 3.5E-34 7.6E-39 266.2 17.6 377 104-537 85-465 (550)
8 KOG4224 Armadillo repeat prote 100.0 9.5E-33 2.1E-37 256.7 20.5 387 76-519 98-494 (550)
9 PHA02713 hypothetical protein; 99.9 6.8E-26 1.5E-30 243.9 17.6 159 541-704 17-177 (557)
10 KOG4441 Proteins containing BT 99.9 2.3E-25 5E-30 238.2 16.9 162 541-705 28-189 (571)
11 PF05804 KAP: Kinesin-associat 99.9 2.6E-22 5.7E-27 214.1 37.0 378 79-519 265-650 (708)
12 PHA02790 Kelch-like protein; P 99.9 3.4E-25 7.4E-30 235.4 13.8 149 542-692 15-167 (480)
13 PHA03098 kelch-like protein; P 99.9 1.7E-24 3.7E-29 236.3 17.2 150 546-699 6-157 (534)
14 PF05804 KAP: Kinesin-associat 99.9 1.9E-21 4.2E-26 207.5 32.5 370 48-480 277-652 (708)
15 KOG4350 Uncharacterized conser 99.9 5E-24 1.1E-28 200.8 11.2 161 541-701 36-199 (620)
16 KOG4199 Uncharacterized conser 99.9 7.9E-21 1.7E-25 175.9 32.0 402 11-479 19-446 (461)
17 KOG4500 Rho/Rac GTPase guanine 99.8 4.6E-18 1E-22 162.8 25.0 427 79-519 58-520 (604)
18 KOG2075 Topoisomerase TOP1-int 99.8 1E-18 2.2E-23 170.0 15.7 166 541-707 106-277 (521)
19 KOG2122 Beta-catenin-binding p 99.8 8.2E-18 1.8E-22 181.8 23.5 357 80-479 211-603 (2195)
20 KOG1048 Neural adherens juncti 99.8 9.1E-18 2E-22 174.7 22.6 357 106-518 235-684 (717)
21 KOG4591 Uncharacterized conser 99.8 1.9E-18 4.2E-23 147.1 10.5 152 540-695 57-213 (280)
22 KOG4199 Uncharacterized conser 99.8 9.9E-16 2.1E-20 142.5 29.1 312 75-409 119-450 (461)
23 KOG1048 Neural adherens juncti 99.8 4.7E-17 1E-21 169.5 21.6 336 57-420 233-659 (717)
24 PF00651 BTB: BTB/POZ domain; 99.7 1.6E-17 3.4E-22 140.3 10.8 106 541-646 2-110 (111)
25 KOG2122 Beta-catenin-binding p 99.7 2.2E-16 4.8E-21 171.0 20.8 325 76-405 251-603 (2195)
26 KOG4682 Uncharacterized conser 99.7 3.7E-17 7.9E-22 155.1 11.8 160 538-698 58-221 (488)
27 PF10508 Proteasom_PSMB: Prote 99.7 5E-14 1.1E-18 150.1 33.5 393 79-519 54-463 (503)
28 PF10508 Proteasom_PSMB: Prote 99.7 4.9E-14 1.1E-18 150.2 29.9 367 107-525 41-427 (503)
29 KOG4500 Rho/Rac GTPase guanine 99.7 3.8E-14 8.2E-19 136.3 24.7 402 60-477 86-519 (604)
30 smart00225 BTB Broad-Complex, 99.6 5.1E-15 1.1E-19 119.8 9.6 90 551-640 1-90 (90)
31 KOG0783 Uncharacterized conser 99.6 2E-15 4.4E-20 155.3 8.7 162 547-708 708-876 (1267)
32 PRK13800 putative oxidoreducta 99.6 8.8E-13 1.9E-17 151.1 28.7 276 103-514 620-895 (897)
33 PRK09687 putative lyase; Provi 99.6 3.4E-13 7.4E-18 131.5 20.8 254 158-515 24-279 (280)
34 PRK09687 putative lyase; Provi 99.5 1.1E-12 2.3E-17 128.0 22.8 254 105-474 24-279 (280)
35 KOG1222 Kinesin associated pro 99.5 2.7E-12 5.8E-17 125.3 22.2 371 46-480 289-666 (791)
36 KOG1293 Proteins containing ar 99.5 1.2E-12 2.5E-17 133.4 20.0 394 76-519 22-534 (678)
37 KOG1222 Kinesin associated pro 99.5 1.3E-11 2.7E-16 120.7 24.8 400 53-519 256-664 (791)
38 PRK13800 putative oxidoreducta 99.5 2.2E-11 4.7E-16 139.8 28.2 264 75-474 633-896 (897)
39 PF04826 Arm_2: Armadillo-like 99.5 2E-11 4.3E-16 116.1 22.4 191 59-278 14-205 (254)
40 PF04826 Arm_2: Armadillo-like 99.4 2.3E-11 5E-16 115.7 20.3 226 101-352 9-252 (254)
41 KOG2171 Karyopherin (importin) 99.4 2.8E-10 6E-15 124.0 27.3 397 58-511 115-539 (1075)
42 cd00020 ARM Armadillo/beta-cat 99.3 3.7E-11 7.9E-16 103.1 15.3 119 244-362 2-120 (120)
43 cd00020 ARM Armadillo/beta-cat 99.3 3.5E-11 7.5E-16 103.2 14.9 118 202-319 2-119 (120)
44 KOG2023 Nuclear transport rece 99.3 4.8E-11 1E-15 121.3 17.9 353 105-518 129-549 (885)
45 KOG2171 Karyopherin (importin) 99.3 1.2E-09 2.5E-14 119.3 29.4 382 77-519 94-505 (1075)
46 cd00256 VATPase_H VATPase_H, r 99.3 2.6E-10 5.6E-15 115.5 22.1 348 157-521 53-428 (429)
47 cd00256 VATPase_H VATPase_H, r 99.3 3.7E-09 8.1E-14 107.2 28.2 304 78-402 69-424 (429)
48 PF01602 Adaptin_N: Adaptin N 99.3 1E-09 2.2E-14 120.6 24.8 381 79-520 58-446 (526)
49 KOG1241 Karyopherin (importin) 99.3 2.1E-08 4.6E-13 104.3 32.0 342 131-520 105-479 (859)
50 KOG2023 Nuclear transport rece 99.3 1.2E-10 2.5E-15 118.5 15.0 386 104-519 10-464 (885)
51 KOG0168 Putative ubiquitin fus 99.2 5.6E-09 1.2E-13 109.5 24.5 246 76-344 181-437 (1051)
52 PF01602 Adaptin_N: Adaptin N 99.2 3E-09 6.6E-14 116.9 23.5 380 80-519 23-407 (526)
53 KOG1293 Proteins containing ar 99.2 3.4E-09 7.4E-14 108.6 21.0 298 88-405 165-535 (678)
54 KOG2160 Armadillo/beta-catenin 99.2 4E-09 8.6E-14 101.6 19.5 185 75-278 95-282 (342)
55 KOG3678 SARM protein (with ste 99.1 6.2E-10 1.4E-14 108.7 13.6 309 244-557 175-500 (832)
56 KOG0168 Putative ubiquitin fus 99.0 6.2E-08 1.3E-12 101.9 22.5 219 54-302 208-437 (1051)
57 KOG1241 Karyopherin (importin) 99.0 1.7E-07 3.8E-12 97.7 24.4 439 55-519 166-669 (859)
58 KOG1062 Vesicle coat complex A 99.0 9.2E-07 2E-11 93.1 29.5 398 62-519 108-545 (866)
59 KOG2759 Vacuolar H+-ATPase V1 99.0 1.8E-07 4E-12 91.3 22.4 345 159-521 67-441 (442)
60 KOG0511 Ankyrin repeat protein 99.0 4.3E-09 9.4E-14 99.9 10.9 140 559-699 301-450 (516)
61 PTZ00429 beta-adaptin; Provisi 99.0 9.4E-07 2E-11 97.2 30.5 349 79-519 84-434 (746)
62 KOG2759 Vacuolar H+-ATPase V1 98.9 7.6E-07 1.6E-11 87.1 25.8 298 80-402 83-437 (442)
63 KOG2160 Armadillo/beta-catenin 98.9 9E-08 2E-12 92.4 19.2 183 129-319 96-281 (342)
64 PTZ00429 beta-adaptin; Provisi 98.9 1.7E-06 3.7E-11 95.2 30.2 361 103-519 31-398 (746)
65 KOG0946 ER-Golgi vesicle-tethe 98.9 2.4E-06 5.1E-11 89.7 29.0 288 106-413 24-357 (970)
66 KOG0946 ER-Golgi vesicle-tethe 98.9 1E-06 2.2E-11 92.3 26.2 333 55-413 20-410 (970)
67 PF03224 V-ATPase_H_N: V-ATPas 98.9 1.3E-07 2.8E-12 95.3 18.1 227 158-394 56-305 (312)
68 KOG3678 SARM protein (with ste 98.8 5.5E-07 1.2E-11 88.6 19.0 276 97-403 173-452 (832)
69 PF03224 V-ATPase_H_N: V-ATPas 98.8 1.9E-07 4.2E-12 94.0 15.9 215 76-309 70-303 (312)
70 KOG0211 Protein phosphatase 2A 98.8 1.1E-06 2.4E-11 95.5 22.1 388 55-519 234-665 (759)
71 KOG4413 26S proteasome regulat 98.8 2.1E-06 4.6E-11 80.8 20.9 306 182-519 60-378 (524)
72 COG5215 KAP95 Karyopherin (imp 98.8 9.5E-06 2.1E-10 82.2 26.7 401 55-521 37-482 (858)
73 COG5215 KAP95 Karyopherin (imp 98.7 7.2E-06 1.6E-10 83.0 25.5 416 71-519 186-669 (858)
74 KOG1517 Guanine nucleotide bin 98.7 4.6E-07 9.9E-12 97.6 17.3 243 58-325 473-737 (1387)
75 KOG1824 TATA-binding protein-i 98.7 3.6E-06 7.8E-11 90.1 23.2 406 73-520 580-1038(1233)
76 KOG4413 26S proteasome regulat 98.7 1.4E-05 3.1E-10 75.4 23.7 328 131-483 97-445 (524)
77 KOG0213 Splicing factor 3b, su 98.7 5.6E-06 1.2E-10 86.2 22.6 255 255-521 805-1068(1172)
78 KOG2973 Uncharacterized conser 98.6 6.2E-06 1.3E-10 77.4 18.5 298 210-523 6-320 (353)
79 KOG0212 Uncharacterized conser 98.6 3.2E-06 6.9E-11 85.5 17.7 319 156-521 83-409 (675)
80 KOG0212 Uncharacterized conser 98.6 2.4E-06 5.2E-11 86.4 16.7 353 103-518 83-444 (675)
81 KOG1059 Vesicle coat complex A 98.5 4.4E-05 9.6E-10 79.7 24.2 204 76-321 194-402 (877)
82 TIGR02270 conserved hypothetic 98.5 3.2E-05 7E-10 79.5 23.0 210 209-519 88-297 (410)
83 PF05536 Neurochondrin: Neuroc 98.5 0.00022 4.7E-09 76.8 29.2 201 58-280 6-215 (543)
84 KOG2973 Uncharacterized conser 98.4 6.6E-05 1.4E-09 70.7 20.8 244 160-418 6-288 (353)
85 KOG0211 Protein phosphatase 2A 98.4 1.4E-05 3E-10 87.3 19.0 372 126-519 247-626 (759)
86 KOG1242 Protein containing ada 98.4 7.3E-05 1.6E-09 77.5 22.9 342 105-519 97-445 (569)
87 KOG1517 Guanine nucleotide bin 98.4 1.1E-05 2.4E-10 87.3 17.5 227 132-366 486-736 (1387)
88 KOG1060 Vesicle coat complex A 98.4 0.00017 3.6E-09 76.3 24.6 361 107-520 38-460 (968)
89 KOG1062 Vesicle coat complex A 98.4 0.0017 3.6E-08 69.4 31.6 310 131-519 122-452 (866)
90 PF14664 RICTOR_N: Rapamycin-i 98.4 0.00038 8.2E-09 70.9 26.4 316 145-475 13-362 (371)
91 KOG0213 Splicing factor 3b, su 98.3 1.3E-05 2.9E-10 83.5 15.8 259 107-406 802-1068(1172)
92 KOG2734 Uncharacterized conser 98.3 4.4E-05 9.5E-10 75.2 18.1 235 230-499 107-371 (536)
93 PF14664 RICTOR_N: Rapamycin-i 98.3 0.00015 3.2E-09 73.9 22.6 187 191-383 9-197 (371)
94 KOG1824 TATA-binding protein-i 98.3 0.00049 1.1E-08 74.3 26.5 435 54-519 428-887 (1233)
95 KOG1789 Endocytosis protein RM 98.3 0.00046 1E-08 75.1 25.5 303 79-403 1741-2116(2235)
96 KOG1061 Vesicle coat complex A 98.3 3E-05 6.6E-10 82.1 16.6 364 105-520 50-417 (734)
97 TIGR02270 conserved hypothetic 98.3 0.00013 2.8E-09 75.2 20.8 211 106-405 88-298 (410)
98 COG5181 HSH155 U2 snRNP splice 98.2 2.4E-05 5.3E-10 80.0 14.6 262 106-406 606-873 (975)
99 KOG4646 Uncharacterized conser 98.2 1.5E-05 3.2E-10 65.1 10.4 119 131-258 32-150 (173)
100 KOG0783 Uncharacterized conser 98.2 1.2E-06 2.5E-11 92.1 4.7 67 547-613 556-634 (1267)
101 PF05536 Neurochondrin: Neuroc 98.2 0.0014 3E-08 70.7 28.0 241 106-362 7-261 (543)
102 COG5369 Uncharacterized conser 98.2 1.7E-05 3.7E-10 79.9 12.4 269 125-401 398-739 (743)
103 KOG1059 Vesicle coat complex A 98.2 0.00029 6.3E-09 73.9 21.2 216 159-403 146-365 (877)
104 KOG4646 Uncharacterized conser 98.2 1.5E-05 3.3E-10 65.0 9.5 132 158-298 17-148 (173)
105 KOG1242 Protein containing ada 98.2 0.0014 2.9E-08 68.4 25.8 341 105-519 135-484 (569)
106 KOG1240 Protein kinase contain 98.2 7.2E-05 1.6E-09 82.6 17.0 281 79-403 439-725 (1431)
107 KOG1060 Vesicle coat complex A 98.1 0.00088 1.9E-08 71.1 23.5 392 61-517 39-495 (968)
108 COG5181 HSH155 U2 snRNP splice 98.1 2.8E-05 6.1E-10 79.5 11.1 262 250-521 605-873 (975)
109 COG1413 FOG: HEAT repeat [Ener 98.1 0.0012 2.6E-08 67.8 23.4 187 157-403 43-242 (335)
110 KOG2734 Uncharacterized conser 98.0 0.0033 7.2E-08 62.5 24.0 267 81-363 102-401 (536)
111 COG1413 FOG: HEAT repeat [Ener 98.0 0.0035 7.5E-08 64.4 25.9 214 104-399 43-269 (335)
112 KOG2259 Uncharacterized conser 98.0 0.00015 3.3E-09 75.1 14.5 250 212-475 203-473 (823)
113 KOG1789 Endocytosis protein RM 97.9 0.0031 6.8E-08 69.0 23.9 137 180-319 1740-1882(2235)
114 PF10165 Ric8: Guanine nucleot 97.9 0.00063 1.4E-08 71.7 18.8 253 180-479 47-339 (446)
115 KOG2838 Uncharacterized conser 97.9 2.6E-05 5.7E-10 71.2 7.3 97 559-655 261-396 (401)
116 COG5240 SEC21 Vesicle coat com 97.9 0.019 4.1E-07 59.2 27.8 333 129-519 203-556 (898)
117 PF00514 Arm: Armadillo/beta-c 97.9 2.7E-05 5.8E-10 51.2 4.9 40 238-277 1-40 (41)
118 KOG2259 Uncharacterized conser 97.9 0.0014 3.1E-08 68.2 19.2 96 180-282 213-314 (823)
119 COG5369 Uncharacterized conser 97.9 6.3E-05 1.4E-09 75.9 9.3 190 266-480 406-597 (743)
120 PF00514 Arm: Armadillo/beta-c 97.9 3.1E-05 6.7E-10 50.9 4.9 40 323-362 2-41 (41)
121 PF10165 Ric8: Guanine nucleot 97.8 0.0012 2.6E-08 69.6 18.7 273 84-364 2-339 (446)
122 KOG0915 Uncharacterized conser 97.8 0.0021 4.5E-08 73.4 20.9 322 179-519 971-1307(1702)
123 COG5231 VMA13 Vacuolar H+-ATPa 97.8 0.0013 2.9E-08 62.3 16.3 227 76-319 162-427 (432)
124 KOG2716 Polymerase delta-inter 97.8 0.00015 3.2E-09 66.8 9.7 94 552-646 7-104 (230)
125 KOG1077 Vesicle coat complex A 97.7 0.052 1.1E-06 57.5 27.5 178 226-416 308-501 (938)
126 PF12348 CLASP_N: CLASP N term 97.7 0.00011 2.4E-09 70.8 8.1 182 301-519 17-207 (228)
127 KOG1061 Vesicle coat complex A 97.7 0.0017 3.6E-08 69.4 17.0 345 133-519 31-380 (734)
128 COG5240 SEC21 Vesicle coat com 97.7 0.053 1.1E-06 56.1 26.2 306 82-478 246-556 (898)
129 PF07707 BACK: BTB And C-termi 97.7 0.0001 2.2E-09 60.7 6.2 50 652-701 1-50 (103)
130 PF12348 CLASP_N: CLASP N term 97.7 0.00072 1.6E-08 65.1 12.8 180 178-363 20-207 (228)
131 KOG0567 HEAT repeat-containing 97.6 0.0064 1.4E-07 56.5 17.6 245 76-401 18-278 (289)
132 PF13646 HEAT_2: HEAT repeats; 97.6 0.00034 7.5E-09 55.5 8.7 86 251-358 1-88 (88)
133 KOG2838 Uncharacterized conser 97.6 8.7E-05 1.9E-09 67.9 5.6 88 546-633 127-219 (401)
134 KOG4535 HEAT and armadillo rep 97.6 0.013 2.8E-07 59.0 20.7 302 180-516 270-601 (728)
135 KOG1943 Beta-tubulin folding c 97.6 0.0095 2.1E-07 66.0 21.5 261 103-403 340-611 (1133)
136 PF13646 HEAT_2: HEAT repeats; 97.6 0.00019 4.1E-09 57.0 6.8 86 209-316 1-88 (88)
137 KOG0915 Uncharacterized conser 97.6 0.022 4.7E-07 65.6 24.2 416 80-520 974-1429(1702)
138 PF09759 Atx10homo_assoc: Spin 97.6 0.00036 7.9E-09 55.5 7.7 67 181-247 2-70 (102)
139 COG5231 VMA13 Vacuolar H+-ATPa 97.6 0.0052 1.1E-07 58.5 16.2 256 257-520 157-430 (432)
140 KOG1240 Protein kinase contain 97.5 0.0046 9.9E-08 69.1 17.9 282 131-477 438-725 (1431)
141 KOG1943 Beta-tubulin folding c 97.5 0.021 4.6E-07 63.4 22.5 256 249-518 341-611 (1133)
142 PF12460 MMS19_C: RNAPII trans 97.5 0.0082 1.8E-07 63.3 18.6 359 106-520 1-396 (415)
143 COG5096 Vesicle coat complex, 97.4 0.16 3.5E-06 55.8 27.3 160 131-319 34-194 (757)
144 PF09759 Atx10homo_assoc: Spin 97.4 0.0007 1.5E-08 53.8 7.1 68 132-205 2-70 (102)
145 KOG0567 HEAT repeat-containing 97.4 0.026 5.6E-07 52.7 17.8 223 210-517 39-279 (289)
146 KOG1077 Vesicle coat complex A 97.3 0.052 1.1E-06 57.5 21.8 254 130-405 125-400 (938)
147 COG5096 Vesicle coat complex, 97.3 0.026 5.6E-07 61.8 20.5 161 181-363 36-196 (757)
148 PF02214 BTB_2: BTB/POZ domain 97.3 0.00026 5.6E-09 57.0 4.2 87 552-639 1-94 (94)
149 PF13513 HEAT_EZ: HEAT-like re 97.3 0.00055 1.2E-08 48.5 5.2 55 221-276 1-55 (55)
150 KOG3036 Protein involved in ce 97.3 0.041 8.8E-07 50.7 17.9 181 80-277 96-290 (293)
151 PF13513 HEAT_EZ: HEAT-like re 97.3 0.00053 1.2E-08 48.6 4.7 55 305-360 1-55 (55)
152 PF08569 Mo25: Mo25-like; Int 97.2 0.046 1E-06 54.8 19.7 262 131-412 14-292 (335)
153 smart00875 BACK BTB And C-term 97.2 0.00057 1.2E-08 56.0 4.7 49 652-700 1-49 (101)
154 KOG4151 Myosin assembly protei 97.1 0.017 3.6E-07 62.4 16.0 241 93-358 493-737 (748)
155 PF11841 DUF3361: Domain of un 97.0 0.014 3E-07 50.6 12.0 133 97-241 4-136 (160)
156 smart00185 ARM Armadillo/beta- 97.0 0.0019 4.1E-08 42.4 5.4 39 239-277 2-40 (41)
157 KOG1987 Speckle-type POZ prote 97.0 0.00041 8.8E-09 69.8 3.1 131 558-688 109-244 (297)
158 KOG2062 26S proteasome regulat 97.0 0.054 1.2E-06 57.7 17.7 160 208-390 520-681 (929)
159 KOG1991 Nuclear transport rece 96.9 0.46 9.9E-06 53.0 24.6 300 76-403 431-757 (1010)
160 smart00185 ARM Armadillo/beta- 96.9 0.003 6.4E-08 41.4 5.2 39 324-362 3-41 (41)
161 KOG1058 Vesicle coat complex C 96.9 0.054 1.2E-06 57.9 16.6 339 131-518 114-463 (948)
162 PF13764 E3_UbLigase_R4: E3 ub 96.8 0.27 5.8E-06 55.1 22.7 196 99-306 112-334 (802)
163 KOG1078 Vesicle coat complex C 96.8 0.91 2E-05 49.3 25.2 271 180-518 260-532 (865)
164 KOG1248 Uncharacterized conser 96.8 0.3 6.5E-06 55.5 22.4 224 131-362 669-898 (1176)
165 PF08569 Mo25: Mo25-like; Int 96.8 0.12 2.6E-06 51.9 17.8 206 152-366 71-287 (335)
166 PRK14707 hypothetical protein; 96.7 0.47 1E-05 57.1 24.3 266 131-406 222-491 (2710)
167 KOG1832 HIV-1 Vpr-binding prot 96.7 0.22 4.9E-06 54.3 20.1 347 131-495 368-796 (1516)
168 KOG3473 RNA polymerase II tran 96.7 0.0068 1.5E-07 46.2 6.4 74 557-631 25-111 (112)
169 KOG4535 HEAT and armadillo rep 96.7 0.014 3.1E-07 58.7 10.6 306 76-403 268-603 (728)
170 KOG1991 Nuclear transport rece 96.7 0.5 1.1E-05 52.7 22.8 259 135-402 391-670 (1010)
171 PF04078 Rcd1: Cell differenti 96.7 0.051 1.1E-06 51.2 13.4 176 80-276 67-260 (262)
172 KOG3036 Protein involved in ce 96.7 0.3 6.4E-06 45.2 17.7 147 181-329 95-255 (293)
173 PF12460 MMS19_C: RNAPII trans 96.6 0.72 1.6E-05 48.7 23.8 338 79-479 18-396 (415)
174 KOG1058 Vesicle coat complex C 96.6 0.39 8.4E-06 51.7 20.6 235 80-365 223-466 (948)
175 PF12755 Vac14_Fab1_bd: Vacuol 96.6 0.016 3.4E-07 46.3 8.4 89 183-276 4-94 (97)
176 PF12717 Cnd1: non-SMC mitotic 96.5 0.17 3.7E-06 46.1 16.1 93 262-363 1-93 (178)
177 PF06025 DUF913: Domain of Unk 96.5 0.56 1.2E-05 48.3 21.3 195 135-330 3-242 (379)
178 KOG1078 Vesicle coat complex C 96.5 0.2 4.3E-06 54.1 18.1 65 334-402 467-531 (865)
179 PRK14707 hypothetical protein; 96.5 1.7 3.8E-05 52.6 26.9 220 136-365 269-491 (2710)
180 PF12755 Vac14_Fab1_bd: Vacuol 96.5 0.015 3.2E-07 46.5 7.6 88 308-396 3-90 (97)
181 PF11822 DUF3342: Domain of un 96.5 0.0086 1.9E-07 58.0 7.3 89 559-647 14-104 (317)
182 PF06025 DUF913: Domain of Unk 96.4 0.26 5.5E-06 50.8 18.2 160 227-386 4-208 (379)
183 PF11841 DUF3361: Domain of un 96.3 0.14 3E-06 44.6 13.1 128 150-281 4-134 (160)
184 PF07814 WAPL: Wings apart-lik 96.3 0.34 7.5E-06 49.8 18.1 289 52-365 16-358 (361)
185 KOG4151 Myosin assembly protei 96.3 0.051 1.1E-06 58.8 12.3 204 145-362 492-699 (748)
186 PF08045 CDC14: Cell division 96.2 0.13 2.7E-06 49.0 13.1 99 180-278 106-207 (257)
187 smart00512 Skp1 Found in Skp1 96.1 0.03 6.5E-07 45.8 7.9 75 557-632 10-104 (104)
188 KOG2062 26S proteasome regulat 96.1 0.47 1E-05 51.0 18.1 159 291-505 519-681 (929)
189 PF05918 API5: Apoptosis inhib 96.1 1.1 2.3E-05 48.1 20.9 120 180-317 37-159 (556)
190 KOG1248 Uncharacterized conser 96.1 2.2 4.7E-05 48.9 24.1 216 180-403 669-898 (1176)
191 PF04078 Rcd1: Cell differenti 95.9 1.5 3.2E-05 41.7 18.7 224 129-360 8-260 (262)
192 KOG1724 SCF ubiquitin ligase, 95.8 0.084 1.8E-06 46.3 9.6 90 557-647 13-127 (162)
193 KOG1665 AFH1-interacting prote 95.8 0.027 5.9E-07 50.5 6.4 90 552-641 11-105 (302)
194 KOG1967 DNA repair/transcripti 95.7 0.085 1.8E-06 57.9 11.0 152 206-360 866-1022(1030)
195 KOG2032 Uncharacterized conser 95.7 0.39 8.4E-06 49.2 14.8 265 248-518 253-531 (533)
196 KOG1967 DNA repair/transcripti 95.7 0.13 2.8E-06 56.5 12.2 151 291-474 867-1021(1030)
197 PF05004 IFRD: Interferon-rela 95.7 0.96 2.1E-05 45.3 17.8 179 180-362 58-257 (309)
198 KOG1020 Sister chromatid cohes 95.7 6.1 0.00013 46.8 25.5 144 104-278 816-960 (1692)
199 PF11698 V-ATPase_H_C: V-ATPas 95.7 0.025 5.4E-07 46.4 5.4 71 208-278 44-115 (119)
200 KOG2025 Chromosome condensatio 95.6 1.3 2.8E-05 47.6 18.6 134 222-367 61-195 (892)
201 PF08045 CDC14: Cell division 95.6 0.27 5.9E-06 46.8 12.6 99 79-194 107-207 (257)
202 KOG4464 Signaling protein RIC- 95.6 0.89 1.9E-05 45.5 16.2 130 131-260 61-198 (532)
203 PF13764 E3_UbLigase_R4: E3 ub 95.5 2.6 5.6E-05 47.6 22.0 186 154-346 114-332 (802)
204 PF12719 Cnd3: Nuclear condens 95.5 0.67 1.5E-05 46.4 16.2 151 249-407 26-189 (298)
205 PF12717 Cnd1: non-SMC mitotic 95.5 0.54 1.2E-05 42.9 14.2 91 77-195 2-93 (178)
206 PF05004 IFRD: Interferon-rela 95.4 0.9 1.9E-05 45.5 16.6 178 78-277 58-256 (309)
207 PF07814 WAPL: Wings apart-lik 95.4 0.87 1.9E-05 46.8 16.8 270 106-405 23-357 (361)
208 PF11698 V-ATPase_H_C: V-ATPas 95.4 0.054 1.2E-06 44.5 6.2 72 158-236 44-115 (119)
209 KOG2714 SETA binding protein S 95.3 0.067 1.5E-06 53.4 8.0 85 552-637 13-102 (465)
210 KOG2274 Predicted importin 9 [ 95.3 1.6 3.5E-05 48.3 18.7 170 104-294 530-705 (1005)
211 KOG4653 Uncharacterized conser 95.3 0.52 1.1E-05 51.7 14.9 212 131-360 742-962 (982)
212 COG5656 SXM1 Importin, protein 95.3 5.6 0.00012 43.3 22.6 297 79-404 432-758 (970)
213 PF03931 Skp1_POZ: Skp1 family 95.2 0.087 1.9E-06 38.2 6.5 51 557-610 9-59 (62)
214 KOG1832 HIV-1 Vpr-binding prot 95.2 3.4 7.3E-05 45.7 20.4 347 135-520 328-775 (1516)
215 KOG2274 Predicted importin 9 [ 95.2 6.7 0.00015 43.8 25.0 216 180-403 465-689 (1005)
216 PF02985 HEAT: HEAT repeat; I 95.2 0.032 7E-07 33.7 3.4 30 334-363 1-30 (31)
217 PF02985 HEAT: HEAT repeat; I 95.0 0.038 8.3E-07 33.4 3.5 29 250-278 1-29 (31)
218 KOG1020 Sister chromatid cohes 95.0 10 0.00023 44.9 28.0 126 76-236 829-960 (1692)
219 KOG1566 Conserved protein Mo25 94.7 2.9 6.2E-05 40.6 16.6 204 202-407 74-290 (342)
220 PF05918 API5: Apoptosis inhib 94.7 0.75 1.6E-05 49.1 14.2 174 211-403 27-207 (556)
221 COG5218 YCG1 Chromosome conden 94.7 4.2 9.2E-05 42.9 18.7 128 229-367 73-201 (885)
222 KOG1243 Protein kinase [Genera 94.6 0.19 4.2E-06 53.8 9.6 186 247-476 328-514 (690)
223 PF12719 Cnd3: Nuclear condens 94.6 0.68 1.5E-05 46.4 13.3 169 208-385 27-208 (298)
224 KOG2956 CLIP-associating prote 94.6 1.3 2.8E-05 45.3 14.6 167 79-277 303-476 (516)
225 KOG4653 Uncharacterized conser 94.5 0.8 1.7E-05 50.3 13.9 177 77-281 741-921 (982)
226 PF14668 RICTOR_V: Rapamycin-i 94.4 0.093 2E-06 39.0 4.9 67 350-416 4-71 (73)
227 COG5116 RPN2 26S proteasome re 94.4 3.3 7.1E-05 43.5 17.3 154 211-387 520-675 (926)
228 PF11701 UNC45-central: Myosin 94.4 0.24 5.2E-06 44.0 8.4 146 251-401 5-157 (157)
229 PF11701 UNC45-central: Myosin 94.3 0.34 7.4E-06 43.0 9.2 146 208-359 4-156 (157)
230 KOG1788 Uncharacterized conser 94.2 12 0.00027 42.4 22.7 379 79-499 483-960 (2799)
231 PF04063 DUF383: Domain of unk 94.2 0.53 1.2E-05 43.1 10.3 127 131-261 10-159 (192)
232 KOG4464 Signaling protein RIC- 94.1 7.2 0.00016 39.3 18.2 174 55-238 43-233 (532)
233 KOG0414 Chromosome condensatio 94.0 0.65 1.4E-05 52.8 12.3 163 105-303 920-1083(1251)
234 KOG2999 Regulator of Rac1, req 93.9 0.98 2.1E-05 47.0 12.4 164 56-239 82-245 (713)
235 KOG0511 Ankyrin repeat protein 93.9 0.13 2.8E-06 50.3 5.9 89 548-638 148-237 (516)
236 KOG2956 CLIP-associating prote 93.7 4.6 0.0001 41.5 16.5 146 208-362 330-477 (516)
237 KOG2137 Protein kinase [Signal 93.6 1.3 2.9E-05 47.9 13.3 240 220-507 286-526 (700)
238 KOG2715 Uncharacterized conser 93.5 1.1 2.3E-05 38.7 10.0 97 550-646 21-121 (210)
239 PF04063 DUF383: Domain of unk 93.5 0.18 4E-06 46.1 6.1 126 345-499 7-157 (192)
240 KOG0414 Chromosome condensatio 93.3 0.73 1.6E-05 52.4 11.3 145 180-345 938-1083(1251)
241 PF14668 RICTOR_V: Rapamycin-i 93.2 0.58 1.2E-05 34.9 7.1 67 80-157 4-70 (73)
242 KOG2025 Chromosome condensatio 93.1 13 0.00028 40.5 19.3 103 104-231 85-188 (892)
243 KOG1243 Protein kinase [Genera 93.1 0.77 1.7E-05 49.4 10.6 228 241-517 285-514 (690)
244 COG5209 RCD1 Uncharacterized p 92.7 1.7 3.7E-05 39.7 10.6 149 80-244 117-275 (315)
245 KOG1778 CREB binding protein/P 92.2 0.11 2.5E-06 51.1 3.0 140 551-691 28-170 (319)
246 COG5098 Chromosome condensatio 92.1 2.7 5.8E-05 45.2 12.7 130 261-404 908-1038(1128)
247 PF12530 DUF3730: Protein of u 92.0 12 0.00026 35.9 17.2 137 210-362 3-151 (234)
248 KOG2999 Regulator of Rac1, req 91.8 4.3 9.3E-05 42.5 13.5 157 107-280 86-244 (713)
249 COG5116 RPN2 26S proteasome re 91.4 0.99 2.2E-05 47.1 8.7 128 338-518 521-650 (926)
250 KOG1820 Microtubule-associated 91.3 8.1 0.00018 43.8 16.3 186 209-403 255-443 (815)
251 KOG3665 ZYG-1-like serine/thre 91.2 11 0.00024 42.4 17.4 176 188-383 494-676 (699)
252 KOG1820 Microtubule-associated 91.2 3.4 7.4E-05 46.7 13.3 187 292-518 254-443 (815)
253 KOG2032 Uncharacterized conser 91.0 1.6 3.4E-05 45.0 9.5 142 216-362 267-415 (533)
254 KOG2137 Protein kinase [Signal 90.9 7.7 0.00017 42.3 15.0 135 247-388 387-522 (700)
255 KOG3665 ZYG-1-like serine/thre 90.9 8.6 0.00019 43.3 16.2 180 314-510 494-689 (699)
256 PF06371 Drf_GBD: Diaphanous G 90.7 1.2 2.6E-05 41.1 8.1 91 145-235 95-186 (187)
257 PF08506 Cse1: Cse1; InterPro 90.1 24 0.00052 36.4 17.5 240 130-398 110-370 (370)
258 PF10363 DUF2435: Protein of u 89.7 1.3 2.7E-05 35.1 6.1 71 210-282 6-76 (92)
259 PF12530 DUF3730: Protein of u 89.5 20 0.00044 34.3 17.1 124 130-277 15-150 (234)
260 KOG1566 Conserved protein Mo25 89.3 23 0.0005 34.7 18.5 203 152-364 74-288 (342)
261 PF12231 Rif1_N: Rap1-interact 89.0 31 0.00067 35.8 21.4 224 126-362 56-303 (372)
262 PF11707 Npa1: Ribosome 60S bi 88.9 29 0.00063 35.3 18.9 165 251-415 58-249 (330)
263 KOG1788 Uncharacterized conser 88.8 17 0.00036 41.4 15.6 253 137-403 663-982 (2799)
264 PF06371 Drf_GBD: Diaphanous G 88.7 4.6 0.0001 37.1 10.4 109 251-361 68-186 (187)
265 PF11864 DUF3384: Domain of un 88.0 42 0.00091 36.1 26.0 90 306-402 230-329 (464)
266 PF01466 Skp1: Skp1 family, di 87.8 1.3 2.9E-05 33.8 5.1 46 615-660 11-59 (78)
267 KOG1525 Sister chromatid cohes 87.6 46 0.00099 40.0 19.3 175 332-506 258-441 (1266)
268 COG5201 SKP1 SCF ubiquitin lig 87.6 7.2 0.00016 32.1 9.0 90 555-647 8-122 (158)
269 KOG2933 Uncharacterized conser 87.2 4.8 0.0001 39.1 9.3 140 293-476 90-233 (334)
270 KOG1949 Uncharacterized conser 86.8 28 0.00061 38.0 15.4 186 107-319 177-369 (1005)
271 PF08506 Cse1: Cse1; InterPro 86.6 29 0.00063 35.8 15.5 147 153-315 206-370 (370)
272 COG5098 Chromosome condensatio 86.2 15 0.00033 39.9 13.0 128 180-322 911-1039(1128)
273 KOG2933 Uncharacterized conser 86.2 7.2 0.00016 37.9 9.9 140 209-361 90-233 (334)
274 smart00638 LPD_N Lipoprotein N 86.1 36 0.00079 37.9 17.4 162 159-354 395-570 (574)
275 COG5218 YCG1 Chromosome conden 85.8 54 0.0012 35.1 18.0 102 206-315 90-194 (885)
276 COG5209 RCD1 Uncharacterized p 85.6 13 0.00028 34.3 10.6 99 181-280 116-220 (315)
277 PF14225 MOR2-PAG1_C: Cell mor 85.5 37 0.00081 33.0 15.8 170 336-518 67-254 (262)
278 PF01347 Vitellogenin_N: Lipop 85.1 7.5 0.00016 43.7 11.6 106 292-403 396-519 (618)
279 PF01347 Vitellogenin_N: Lipop 85.1 38 0.00083 38.1 17.2 199 105-356 396-616 (618)
280 KOG1992 Nuclear export recepto 84.9 72 0.0016 35.8 18.3 191 79-278 309-527 (960)
281 smart00638 LPD_N Lipoprotein N 84.6 32 0.0007 38.3 16.0 144 251-403 313-475 (574)
282 PF10363 DUF2435: Protein of u 84.1 1.8 3.9E-05 34.2 4.2 70 449-519 4-73 (92)
283 PF13251 DUF4042: Domain of un 83.9 28 0.0006 31.6 12.2 156 349-519 2-175 (182)
284 PF08324 PUL: PUL domain; Int 83.9 12 0.00027 36.7 11.2 147 132-283 79-236 (268)
285 PF11707 Npa1: Ribosome 60S bi 83.5 55 0.0012 33.3 21.6 159 209-367 58-242 (330)
286 PF08167 RIX1: rRNA processing 83.1 4.3 9.4E-05 36.4 6.9 115 334-477 26-143 (165)
287 PF11864 DUF3384: Domain of un 82.9 73 0.0016 34.3 18.2 71 448-518 250-330 (464)
288 PF13251 DUF4042: Domain of un 82.8 20 0.00044 32.5 10.9 138 223-364 2-176 (182)
289 COG5656 SXM1 Importin, protein 82.4 87 0.0019 34.8 19.6 121 156-280 407-530 (970)
290 KOG2611 Neurochondrin/leucine- 82.0 70 0.0015 33.4 18.6 130 252-384 14-162 (698)
291 PF11865 DUF3385: Domain of un 82.0 11 0.00025 33.4 9.0 147 59-235 8-156 (160)
292 KOG1949 Uncharacterized conser 81.6 90 0.0019 34.4 17.1 148 252-402 177-330 (1005)
293 PF12031 DUF3518: Domain of un 80.8 0.77 1.7E-05 42.7 1.2 91 388-504 138-231 (257)
294 PF08324 PUL: PUL domain; Int 80.0 11 0.00024 37.1 9.2 149 80-238 80-233 (268)
295 PF14726 RTTN_N: Rotatin, an a 79.0 13 0.00028 29.7 7.3 69 331-399 28-96 (98)
296 PF14500 MMS19_N: Dos2-interac 78.5 69 0.0015 31.2 15.9 148 210-363 2-154 (262)
297 PF11865 DUF3385: Domain of un 78.3 15 0.00032 32.7 8.5 144 250-402 11-156 (160)
298 PF12031 DUF3518: Domain of un 78.1 7.8 0.00017 36.3 6.7 82 222-304 139-229 (257)
299 PF11822 DUF3342: Domain of un 77.8 1.2 2.5E-05 43.7 1.4 58 646-703 71-129 (317)
300 KOG2611 Neurochondrin/leucine- 77.8 96 0.0021 32.5 17.5 190 80-278 28-225 (698)
301 PF08167 RIX1: rRNA processing 76.7 24 0.00051 31.6 9.4 108 292-403 26-143 (165)
302 KOG2011 Sister chromatid cohes 75.8 1.7E+02 0.0037 34.4 21.1 135 259-401 297-433 (1048)
303 KOG2676 Uncharacterized conser 75.6 4.5 9.8E-05 39.8 4.6 64 184-247 375-440 (478)
304 PF14500 MMS19_N: Dos2-interac 75.5 84 0.0018 30.7 18.1 209 131-363 14-238 (262)
305 PF10521 DUF2454: Protein of u 74.7 39 0.00084 33.5 11.3 70 208-277 120-202 (282)
306 PLN03076 ARF guanine nucleotid 74.0 1.6E+02 0.0035 37.3 18.0 286 78-385 1152-1513(1780)
307 KOG0301 Phospholipase A2-activ 73.0 1.3E+02 0.0027 33.1 14.6 163 218-385 555-727 (745)
308 KOG0413 Uncharacterized conser 72.2 26 0.00056 39.7 9.7 129 128-279 943-1074(1529)
309 KOG0301 Phospholipase A2-activ 70.6 1.7E+02 0.0037 32.1 15.9 159 180-344 559-727 (745)
310 KOG3840 Uncharaterized conserv 68.8 7 0.00015 37.4 4.1 86 548-633 94-185 (438)
311 KOG2005 26S proteasome regulat 68.2 1.6E+02 0.0036 32.3 14.1 108 376-525 642-750 (878)
312 cd03561 VHS VHS domain family; 68.2 65 0.0014 27.6 9.8 73 292-364 38-114 (133)
313 KOG0392 SNF2 family DNA-depend 67.7 1.3E+02 0.0028 35.8 14.1 179 179-364 143-327 (1549)
314 PLN03076 ARF guanine nucleotid 67.7 3.5E+02 0.0076 34.5 19.5 132 131-276 1152-1297(1780)
315 cd03569 VHS_Hrs_Vps27p VHS dom 66.8 86 0.0019 27.2 10.9 71 207-277 41-113 (142)
316 PF12830 Nipped-B_C: Sister ch 64.6 1.2E+02 0.0025 27.9 13.2 144 158-320 9-167 (187)
317 KOG1848 Uncharacterized conser 64.6 1.6E+02 0.0034 35.5 14.1 93 180-277 857-957 (1610)
318 PF10521 DUF2454: Protein of u 64.0 69 0.0015 31.7 10.4 70 250-319 120-202 (282)
319 PF06685 DUF1186: Protein of u 63.9 1.4E+02 0.0031 28.7 13.1 120 55-205 29-153 (249)
320 PF14631 FancD2: Fanconi anaem 62.6 3.9E+02 0.0085 33.4 18.5 130 257-392 443-572 (1426)
321 KOG0413 Uncharacterized conser 62.2 46 0.001 37.9 9.2 129 263-405 945-1075(1529)
322 PRK09169 hypothetical protein; 62.0 4.6E+02 0.01 34.0 24.4 15 346-360 413-427 (2316)
323 PF14225 MOR2-PAG1_C: Cell mor 61.9 1.6E+02 0.0035 28.7 19.3 172 209-401 66-252 (262)
324 PF06685 DUF1186: Protein of u 61.7 1.2E+02 0.0025 29.3 10.9 148 104-276 31-181 (249)
325 cd03569 VHS_Hrs_Vps27p VHS dom 61.7 34 0.00074 29.7 6.9 72 292-363 42-115 (142)
326 cd03568 VHS_STAM VHS domain fa 61.3 34 0.00074 29.8 6.8 73 292-364 38-112 (144)
327 cd03561 VHS VHS domain family; 60.4 42 0.00092 28.7 7.2 71 208-278 38-112 (133)
328 KOG0392 SNF2 family DNA-depend 60.0 1.1E+02 0.0025 36.2 12.0 95 263-362 143-237 (1549)
329 PF08216 CTNNBL: Catenin-beta- 59.5 11 0.00024 30.5 3.1 43 225-268 64-106 (108)
330 KOG0891 DNA-dependent protein 59.2 5.4E+02 0.012 33.9 19.2 181 217-405 539-721 (2341)
331 PF12074 DUF3554: Domain of un 59.0 2.1E+02 0.0046 29.1 13.5 80 219-302 174-255 (339)
332 PRK09169 hypothetical protein; 59.0 5.2E+02 0.011 33.6 22.6 22 129-150 413-434 (2316)
333 PF13001 Ecm29: Proteasome sta 58.1 1.5E+02 0.0033 32.2 12.6 168 180-362 252-443 (501)
334 PF01603 B56: Protein phosphat 57.9 1.5E+02 0.0032 31.3 12.1 224 105-362 134-370 (409)
335 PF07707 BACK: BTB And C-termi 57.5 14 0.0003 29.8 3.6 60 621-680 2-75 (103)
336 PF12830 Nipped-B_C: Sister ch 57.3 1.6E+02 0.0034 27.0 14.0 71 208-283 9-79 (187)
337 PF00651 BTB: BTB/POZ domain; 57.2 18 0.0004 29.5 4.4 31 648-678 80-110 (111)
338 cd03568 VHS_STAM VHS domain fa 56.8 56 0.0012 28.4 7.3 93 218-319 15-109 (144)
339 PF10274 ParcG: Parkin co-regu 56.0 1.6E+02 0.0035 26.8 11.0 80 207-286 38-117 (183)
340 PF12231 Rif1_N: Rap1-interact 55.6 2.6E+02 0.0056 29.0 21.1 291 52-362 30-352 (372)
341 KOG1525 Sister chromatid cohes 55.1 1.3E+02 0.0029 36.4 12.0 176 207-391 259-441 (1266)
342 cd08050 TAF6 TATA Binding Prot 55.0 1.3E+02 0.0028 30.8 10.8 139 253-402 182-339 (343)
343 cd03567 VHS_GGA VHS domain fam 54.8 61 0.0013 28.0 7.2 72 292-363 39-117 (139)
344 smart00288 VHS Domain present 54.5 52 0.0011 28.2 6.7 72 292-363 38-112 (133)
345 PF01365 RYDR_ITPR: RIH domain 54.4 41 0.0009 31.4 6.8 110 148-260 34-153 (207)
346 PF10274 ParcG: Parkin co-regu 54.2 1.7E+02 0.0036 26.7 9.9 77 249-325 38-114 (183)
347 PF08216 CTNNBL: Catenin-beta- 52.4 20 0.00044 29.0 3.5 39 80-118 63-101 (108)
348 KOG2075 Topoisomerase TOP1-int 50.4 25 0.00055 36.5 4.7 44 647-693 185-228 (521)
349 KOG1822 Uncharacterized conser 49.9 6.5E+02 0.014 32.0 18.5 247 251-519 878-1128(2067)
350 KOG0891 DNA-dependent protein 49.6 4.6E+02 0.01 34.5 15.9 197 206-404 564-764 (2341)
351 cd03567 VHS_GGA VHS domain fam 49.0 1.8E+02 0.0038 25.2 10.8 70 208-277 39-115 (139)
352 KOG1848 Uncharacterized conser 48.8 3.9E+02 0.0085 32.5 13.9 165 131-304 857-1029(1610)
353 PF01365 RYDR_ITPR: RIH domain 48.2 51 0.0011 30.8 6.3 80 221-303 75-154 (207)
354 KOG2011 Sister chromatid cohes 47.8 5.5E+02 0.012 30.5 16.3 136 343-516 297-433 (1048)
355 KOG1822 Uncharacterized conser 47.5 7.1E+02 0.015 31.7 19.0 178 131-320 799-988 (2067)
356 PF14726 RTTN_N: Rotatin, an a 47.4 1.5E+02 0.0032 23.8 8.3 64 247-311 28-91 (98)
357 PF01603 B56: Protein phosphat 47.1 3.7E+02 0.008 28.3 14.9 211 177-398 102-321 (409)
358 KOG2549 Transcription initiati 46.7 3.3E+02 0.0072 29.4 12.0 117 158-276 240-368 (576)
359 PF12463 DUF3689: Protein of u 46.7 3.1E+02 0.0067 27.4 17.8 137 98-241 3-178 (303)
360 KOG2676 Uncharacterized conser 46.1 23 0.00049 35.2 3.5 65 135-205 375-440 (478)
361 PF13001 Ecm29: Proteasome sta 46.0 3.6E+02 0.0077 29.4 13.1 176 131-320 252-443 (501)
362 KOG2723 Uncharacterized conser 45.9 41 0.00089 31.4 5.0 92 549-641 7-104 (221)
363 smart00288 VHS Domain present 45.0 1E+02 0.0022 26.4 7.1 70 250-319 38-110 (133)
364 PF03130 HEAT_PBS: PBS lyase H 44.4 31 0.00067 19.8 2.6 26 132-167 1-26 (27)
365 PF12054 DUF3535: Domain of un 44.1 3.8E+02 0.0083 28.6 12.6 110 221-334 101-211 (441)
366 PF00790 VHS: VHS domain; Int 43.9 1.9E+02 0.0042 24.9 8.8 70 208-277 43-117 (140)
367 PF04821 TIMELESS: Timeless pr 43.3 2.4E+02 0.0051 27.7 10.2 76 387-478 133-209 (266)
368 PF12726 SEN1_N: SEN1 N termin 43.3 2.6E+02 0.0056 32.3 12.1 141 211-363 445-586 (727)
369 PF11791 Aconitase_B_N: Aconit 41.6 1.6E+02 0.0036 25.6 7.5 42 465-516 80-121 (154)
370 KOG4231 Intracellular membrane 41.4 22 0.00049 37.0 2.8 68 210-277 331-398 (763)
371 PF06012 DUF908: Domain of Unk 41.4 4E+02 0.0086 27.1 12.2 66 131-201 237-304 (329)
372 PF00790 VHS: VHS domain; Int 39.3 2E+02 0.0042 24.9 8.1 72 292-363 43-119 (140)
373 PF04869 Uso1_p115_head: Uso1 38.4 4.3E+02 0.0093 26.6 14.7 139 180-318 53-229 (312)
374 PHA03098 kelch-like protein; P 38.3 72 0.0016 35.1 6.6 85 615-700 105-211 (534)
375 KOG1410 Nuclear transport rece 37.6 6.2E+02 0.013 28.2 15.3 215 130-361 20-283 (1082)
376 KOG2149 Uncharacterized conser 37.2 3.5E+02 0.0076 27.9 10.3 113 209-322 60-172 (393)
377 smart00567 EZ_HEAT E-Z type HE 35.3 60 0.0013 18.9 3.0 28 131-168 2-29 (30)
378 PF12765 Cohesin_HEAT: HEAT re 35.1 42 0.00091 21.9 2.4 26 332-357 17-42 (42)
379 PF04388 Hamartin: Hamartin pr 34.6 5.2E+02 0.011 29.4 12.4 58 305-362 82-140 (668)
380 KOG4231 Intracellular membrane 34.3 31 0.00068 36.0 2.6 70 293-362 330-399 (763)
381 KOG2005 26S proteasome regulat 33.1 7.3E+02 0.016 27.7 13.7 64 251-321 642-705 (878)
382 cd08050 TAF6 TATA Binding Prot 32.7 84 0.0018 32.1 5.4 86 57-144 210-296 (343)
383 PF04388 Hamartin: Hamartin pr 32.5 5.2E+02 0.011 29.4 11.9 60 180-239 83-143 (668)
384 PF04869 Uso1_p115_head: Uso1 32.2 5.4E+02 0.012 25.9 15.7 143 220-362 51-231 (312)
385 PF14663 RasGEF_N_2: Rapamycin 32.1 1.6E+02 0.0035 24.4 6.1 39 250-289 9-47 (115)
386 PF14666 RICTOR_M: Rapamycin-i 31.2 4.7E+02 0.01 24.9 11.7 141 77-235 78-224 (226)
387 KOG4682 Uncharacterized conser 30.9 47 0.001 33.7 3.1 33 615-647 170-202 (488)
388 KOG2149 Uncharacterized conser 29.8 3.8E+02 0.0083 27.6 9.2 111 251-362 60-170 (393)
389 KOG2213 Apoptosis inhibitor 5/ 29.4 6.5E+02 0.014 26.0 14.9 258 253-519 29-315 (460)
390 PF12074 DUF3554: Domain of un 29.3 6.2E+02 0.013 25.7 14.1 212 133-364 4-237 (339)
391 KOG1992 Nuclear export recepto 29.0 9.4E+02 0.02 27.7 23.6 239 222-477 262-527 (960)
392 PF09324 DUF1981: Domain of un 28.7 1E+02 0.0023 23.9 4.2 65 331-399 15-84 (86)
393 smart00549 TAFH TAF homology. 28.0 3E+02 0.0065 21.6 6.2 70 375-470 8-78 (92)
394 KOG4350 Uncharacterized conser 27.9 52 0.0011 33.3 2.8 58 589-646 106-176 (620)
395 PF06012 DUF908: Domain of Unk 27.9 2.4E+02 0.0052 28.7 7.8 62 79-149 238-302 (329)
396 PF12397 U3snoRNP10: U3 small 27.4 3.6E+02 0.0079 22.4 10.0 66 208-279 7-75 (121)
397 PF14631 FancD2: Fanconi anaem 26.6 1.4E+03 0.03 28.9 18.4 69 332-403 430-502 (1426)
398 PHA02713 hypothetical protein; 26.1 81 0.0018 34.9 4.3 34 645-678 89-122 (557)
399 KOG2549 Transcription initiati 25.9 4.1E+02 0.0088 28.7 8.8 129 57-193 239-369 (576)
400 KOG4524 Uncharacterized conser 25.1 2.5E+02 0.0054 32.5 7.6 93 208-302 804-900 (1014)
401 PF11459 DUF2893: Protein of u 24.6 3E+02 0.0064 20.4 7.1 63 602-668 5-67 (69)
402 PF11791 Aconitase_B_N: Aconit 24.6 1.7E+02 0.0037 25.5 4.9 26 376-401 96-121 (154)
403 PF04821 TIMELESS: Timeless pr 24.4 6.8E+02 0.015 24.5 14.3 38 97-144 33-71 (266)
404 PF08389 Xpo1: Exportin 1-like 24.1 1.7E+02 0.0037 25.1 5.4 71 55-140 76-148 (148)
405 PF12054 DUF3535: Domain of un 23.9 9E+02 0.02 25.8 16.2 78 305-386 101-180 (441)
406 PF07571 DUF1546: Protein of u 23.7 1.4E+02 0.0031 23.5 4.2 59 128-192 18-76 (92)
407 PF14666 RICTOR_M: Rapamycin-i 23.7 6.4E+02 0.014 24.0 13.5 163 103-277 50-224 (226)
408 PF12783 Sec7_N: Guanine nucle 23.2 3.9E+02 0.0085 23.8 7.5 74 245-321 69-147 (168)
409 PF12463 DUF3689: Protein of u 22.7 7.8E+02 0.017 24.6 16.7 134 150-283 2-178 (303)
410 PF14663 RasGEF_N_2: Rapamycin 22.7 1.4E+02 0.0031 24.7 4.1 39 208-247 9-47 (115)
411 PF07571 DUF1546: Protein of u 22.1 2.2E+02 0.0048 22.5 4.9 57 345-401 18-76 (92)
412 KOG4390 Voltage-gated A-type K 21.7 5.1E+02 0.011 26.3 8.2 101 552-656 42-148 (632)
413 cd03572 ENTH_epsin_related ENT 21.6 4.9E+02 0.011 21.9 9.3 39 106-156 40-80 (122)
414 PF08713 DNA_alkylation: DNA a 21.4 6.6E+02 0.014 23.2 10.7 140 107-290 54-196 (213)
415 PF08389 Xpo1: Exportin 1-like 21.3 2.7E+02 0.0058 23.8 6.0 64 447-513 81-148 (148)
416 PF07923 N1221: N1221-like pro 21.0 1.4E+02 0.003 29.8 4.5 54 206-259 59-126 (293)
417 PF04499 SAPS: SIT4 phosphatas 20.6 5.3E+02 0.011 27.8 8.9 39 198-236 53-92 (475)
No 1
>PLN03200 cellulose synthase-interactive protein; Provisional
Probab=100.00 E-value=6.1e-37 Score=351.83 Aligned_cols=447 Identities=20% Similarity=0.204 Sum_probs=363.5
Q ss_pred HHHHHhhhhhccccchHHHHHHHHHHHHHHHHhhc-ChhhHHHHHhCCChHHHHHhhcCCCCCccccCCCccchHHHhHH
Q 005044 58 EVSAQVNVLNTTFSWLEADRAAAKRATHVLAELAK-NEEVVNWIVEGGAVPALVKHLQAPPTSEADRNLKPFEHEVEKGS 136 (717)
Q Consensus 58 ~i~~l~~~L~~~~~~~~~~~~~~~~a~~~L~~l~~-~~~~~~~~~~~g~i~~L~~lL~~~~~~~~~~~~~~~~~~v~~~a 136 (717)
.+|.++.+|.+. ++..+..|+++|.+++. +++.+..+++.|+||.|+++|++++. +.+|+.|
T Consensus 190 aVp~LV~LLsS~------d~~lQ~eAa~aLa~Lass~ee~~~aVIeaGaVP~LV~LL~sg~~-----------~~VRE~A 252 (2102)
T PLN03200 190 GVDILVKLLSSG------NSDAQANAASLLARLMMAFESSISKVLDAGAVKQLLKLLGQGNE-----------VSVRAEA 252 (2102)
T ss_pred CHHHHHHHHcCC------CHHHHHHHHHHHHHHHcCChHHHHHHHHCCCHHHHHHHHccCCC-----------hHHHHHH
Confidence 567777777543 44568999999988887 57889999999999999999976432 2899999
Q ss_pred HHHHHHhc-CChhhHHHHHhCCChHHHHHHHhccccCCC-ccchhHHHHHHHHHHHHHhhcCch-----------h----
Q 005044 137 AFALGLLA-VKPEHQQLIVDNGALSHLVNLLKRHMDSNC-SRAVNSVIRRAADAITNLAHENSS-----------I---- 199 (717)
Q Consensus 137 ~~~L~~l~-~~~~~~~~~~~~~~i~~L~~lL~~~~~~~~-~~~~~~~~~~a~~~L~~l~~~~~~-----------~---- 199 (717)
+++|++|+ ++++++..+++.|+++.|+.++.....+.. ......+++.|+|+|.|+|.+.+. .
T Consensus 253 A~AL~nLAs~s~e~r~~Iv~aGgIp~LI~lL~sp~~e~~~~~~~~~Lqe~AvwALsNIcgg~~~ll~~L~~ll~s~rd~~ 332 (2102)
T PLN03200 253 AGALEALSSQSKEAKQAIADAGGIPALINATVAPSKEFMQGEFAQALQENAMGALANICGGMSALILYLGELSESPRSPA 332 (2102)
T ss_pred HHHHHHHhcCCHHHHHHHHHCCCHHHHHHHHhCcchhhhccccchHHHHHHHHHHHHHhCCchhhHHHHHHhhcccchHH
Confidence 99999999 789999999999999999999975432100 000115788899999998873111 0
Q ss_pred ----------------------------------------------------------------hhHHHhcCCcHHHHHh
Q 005044 200 ----------------------------------------------------------------KTRVRMEGGIPPLVEL 215 (717)
Q Consensus 200 ----------------------------------------------------------------~~~~~~~~~i~~L~~l 215 (717)
+..+...++++.|+.+
T Consensus 333 ~~ada~gALayll~l~d~~~~~~~~i~~~~v~~~LV~Llr~k~p~~vqe~V~eALasl~gN~~l~~~L~~~daik~LV~L 412 (2102)
T PLN03200 333 PIADTLGALAYALMVFDSSAESTRAFDPTVIEQILVKLLKPRDTKLVQERIIEALASLYGNAYLSRKLNHAEAKKVLVGL 412 (2102)
T ss_pred HHHHHHhhHHHHHHhcCCchhhhhhccccccHHHHHHHhCCCCCchhHHHHHHHHHHhcCChHHHHHHHhccchhhhhhh
Confidence 0011122445555666
Q ss_pred hcCCCHHHHHHHHHHHHHhhccChhhHHHHHhcCCHHHHHHHHcCCCHHHHHHHHHHHHHhhcCChHHHHHHHHcCChHH
Q 005044 216 LEFTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSEDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQP 295 (717)
Q Consensus 216 l~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~l~~ 295 (717)
+...+.+++..++++|++|+.++++.+..+.+.|+++.|+++|.+++..++..|+++|++++.+++..+..+++.|++|.
T Consensus 413 L~~~~~evQ~~Av~aL~~L~~~~~e~~~aIi~~ggIp~LV~LL~s~s~~iQ~~A~~~L~nLa~~ndenr~aIieaGaIP~ 492 (2102)
T PLN03200 413 ITMATADVQEELIRALSSLCCGKGGLWEALGGREGVQLLISLLGLSSEQQQEYAVALLAILTDEVDESKWAITAAGGIPP 492 (2102)
T ss_pred hccCCHHHHHHHHHHHHHHhCCCHHHHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHH
Confidence 66667889999999999999888899999999999999999999999999999999999999988888899999999999
Q ss_pred HHHhhccCChHHHHHHHHHHHHHhcCChhhHHHHHhcCChHHHHHHhcCCCHHHHHHHHHHHHHhhcCCCCc--------
Q 005044 296 VIGLLSSCCSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQSPDVQLREMSAFALGRLAQDMHNQ-------- 367 (717)
Q Consensus 296 L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~l~~~~~l~~L~~~l~~~~~~v~~~a~~~L~~l~~~~~~~-------- 367 (717)
|+++|.+++.+++++|+|+|+|++.+.+..+..+.+.|+++.|+++|+++++.++..++|+|.+|+.+.+..
T Consensus 493 LV~LL~s~~~~iqeeAawAL~NLa~~~~qir~iV~~aGAIppLV~LL~sgd~~~q~~Aa~AL~nLi~~~d~~~I~~Lv~L 572 (2102)
T PLN03200 493 LVQLLETGSQKAKEDSATVLWNLCCHSEDIRACVESAGAVPALLWLLKNGGPKGQEIAAKTLTKLVRTADAATISQLTAL 572 (2102)
T ss_pred HHHHHcCCCHHHHHHHHHHHHHHhCCcHHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHhccchhHHHHHHHH
Confidence 999999999999999999999999876666666778999999999999999999999999999997432211
Q ss_pred -------------------------h----h-hHhcCChHHHHHhhcCCChhHHHHHHHHHHhccC-CCcchHHHHHhcC
Q 005044 368 -------------------------A----G-IAHNGGLVPLLKLLDSKNGSLQHNAAFALYGLAD-NEDNVADFIRVGG 416 (717)
Q Consensus 368 -------------------------~----~-l~~~~~l~~L~~ll~~~~~~v~~~a~~~L~~l~~-~~~~~~~l~~~~~ 416 (717)
. . ....|+++.|++++.+++..+++.|+++|.+++. ..+.+..+...|+
T Consensus 573 Llsdd~~~~~~aL~vLgnIlsl~~~~d~~~~g~~~~ggL~~Lv~LL~sgs~~ikk~Aa~iLsnL~a~~~d~~~avv~aga 652 (2102)
T PLN03200 573 LLGDLPESKVHVLDVLGHVLSVASLEDLVREGSAANDALRTLIQLLSSSKEETQEKAASVLADIFSSRQDLCESLATDEI 652 (2102)
T ss_pred hcCCChhHHHHHHHHHHHHHhhcchhHHHHHhhhccccHHHHHHHHcCCCHHHHHHHHHHHHHHhcCChHHHHHHHHcCC
Confidence 0 0 1135899999999999999999999999999976 4566788999999
Q ss_pred ccccccchhHHh--hhHHHHHH---HH-----HHHHHHhhhchHHHHHHHHhhcchhHHHHHHHHHHhccCCCCCceeee
Q 005044 417 VQKLQDGEFIVQ--ATKDCVAK---TL-----KRLEEKIHGRVLNHLLYLMRVAEKGVQRRVALALAHLCSPDDQRTIFI 486 (717)
Q Consensus 417 i~~L~~~~~~~~--~~~~~~~~---~~-----~~l~~~~~~~~~~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~~ 486 (717)
+++++....... ...++.+. .. .+....++.|+++.|+++|.+++.+++..++.+|.|++...+....+.
T Consensus 653 IpPLV~LLss~~~~v~keAA~AL~nL~~~~~~~q~~~~v~~GaV~pL~~LL~~~d~~v~e~Al~ALanLl~~~e~~~ei~ 732 (2102)
T PLN03200 653 INPCIKLLTNNTEAVATQSARALAALSRSIKENRKVSYAAEDAIKPLIKLAKSSSIEVAEQAVCALANLLSDPEVAAEAL 732 (2102)
T ss_pred HHHHHHHHhcCChHHHHHHHHHHHHHHhCCCHHHHHHHHHcCCHHHHHHHHhCCChHHHHHHHHHHHHHHcCchHHHHHH
Confidence 999887544221 12222221 11 122234678999999999999999999999999999999999888788
Q ss_pred cCCCHHHHHHHhcCCCchhhhhhHHHHHHhhhccc
Q 005044 487 DGGGLELLLGLLGSTNPKQQLDGAVALFKLANKAT 521 (717)
Q Consensus 487 ~~~~l~~L~~ll~~~~~~v~~~a~~~l~~L~~~~~ 521 (717)
..|+++.|++++++++++.|+.|+++|.+|+++.+
T Consensus 733 ~~~~I~~Lv~lLr~G~~~~k~~Aa~AL~~L~~~~~ 767 (2102)
T PLN03200 733 AEDIILPLTRVLREGTLEGKRNAARALAQLLKHFP 767 (2102)
T ss_pred hcCcHHHHHHHHHhCChHHHHHHHHHHHHHHhCCC
Confidence 89999999999999999999999999999997643
No 2
>PLN03200 cellulose synthase-interactive protein; Provisional
Probab=100.00 E-value=3.5e-35 Score=337.46 Aligned_cols=433 Identities=21% Similarity=0.236 Sum_probs=349.3
Q ss_pred HHHHHHhhhhhccccchHHHHHHHHHHHHHHHHhhcChh-hHHHHHhCCChHHHHHhhcCCCCCccccCCCccchHHHhH
Q 005044 57 SEVSAQVNVLNTTFSWLEADRAAAKRATHVLAELAKNEE-VVNWIVEGGAVPALVKHLQAPPTSEADRNLKPFEHEVEKG 135 (717)
Q Consensus 57 ~~i~~l~~~L~~~~~~~~~~~~~~~~a~~~L~~l~~~~~-~~~~~~~~g~i~~L~~lL~~~~~~~~~~~~~~~~~~v~~~ 135 (717)
..+|.+++.|...- ..+..++..++.+|.+++.+.+ ....+++.|++|.|+.+|+++++ .++..
T Consensus 144 GaVp~Lv~lL~~gs---k~d~~L~~~Av~AL~nLs~~~en~~~~IIeaGaVp~LV~LLsS~d~------------~lQ~e 208 (2102)
T PLN03200 144 GVVPSLWDQLQPGN---KQDKVVEGLLTGALRNLCGSTDGFWSATLEAGGVDILVKLLSSGNS------------DAQAN 208 (2102)
T ss_pred CChHHHHHHHhCCc---hhhHHHHHHHHHHHHHHhcCccchHHHHHHcCCHHHHHHHHcCCCH------------HHHHH
Confidence 34677777776641 2344467788999999999654 44677899999999999988665 99999
Q ss_pred HHHHHHHhc-CChhhHHHHHhCCChHHHHHHHhccccCCCccchhHHHHHHHHHHHHHhhcCchhhhHHHhcCCcHHHHH
Q 005044 136 SAFALGLLA-VKPEHQQLIVDNGALSHLVNLLKRHMDSNCSRAVNSVIRRAADAITNLAHENSSIKTRVRMEGGIPPLVE 214 (717)
Q Consensus 136 a~~~L~~l~-~~~~~~~~~~~~~~i~~L~~lL~~~~~~~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ 214 (717)
|+++|.+++ ..++.+..+++.|+++.|+.+|++.++. .+++.|+|+|.+++.++++.+..+++.|+++.|+.
T Consensus 209 Aa~aLa~Lass~ee~~~aVIeaGaVP~LV~LL~sg~~~-------~VRE~AA~AL~nLAs~s~e~r~~Iv~aGgIp~LI~ 281 (2102)
T PLN03200 209 AASLLARLMMAFESSISKVLDAGAVKQLLKLLGQGNEV-------SVRAEAAGALEALSSQSKEAKQAIADAGGIPALIN 281 (2102)
T ss_pred HHHHHHHHHcCChHHHHHHHHCCCHHHHHHHHccCCCh-------HHHHHHHHHHHHHhcCCHHHHHHHHHCCCHHHHHH
Confidence 999999999 6688999999999999999999865432 78999999999999999999999999999999999
Q ss_pred hhcCCC---------HHHHHHHHHHHHHhhccChh-----------h---------------------------------
Q 005044 215 LLEFTD---------TKVQRAAAGALRTLAFKNDE-----------N--------------------------------- 241 (717)
Q Consensus 215 ll~~~~---------~~v~~~a~~~L~~L~~~~~~-----------~--------------------------------- 241 (717)
++..++ ..+++.|.|+|.|+|.+... .
T Consensus 282 lL~sp~~e~~~~~~~~~Lqe~AvwALsNIcgg~~~ll~~L~~ll~s~rd~~~~ada~gALayll~l~d~~~~~~~~i~~~ 361 (2102)
T PLN03200 282 ATVAPSKEFMQGEFAQALQENAMGALANICGGMSALILYLGELSESPRSPAPIADTLGALAYALMVFDSSAESTRAFDPT 361 (2102)
T ss_pred HHhCcchhhhccccchHHHHHHHHHHHHHhCCchhhHHHHHHhhcccchHHHHHHHHhhHHHHHHhcCCchhhhhhcccc
Confidence 997654 34689999999998863111 0
Q ss_pred -----------------------------------HHHHHhcCCHHHHHHHHcCCCHHHHHHHHHHHHHhhcCChHHHHH
Q 005044 242 -----------------------------------KNQIVECNALPTLILMLRSEDSAIHYEAVGVIGNLVHSSPNIKKE 286 (717)
Q Consensus 242 -----------------------------------~~~~~~~g~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~ 286 (717)
++.+.+.++++.|+.++...+.+++..++++|++++.++.+.++.
T Consensus 362 ~v~~~LV~Llr~k~p~~vqe~V~eALasl~gN~~l~~~L~~~daik~LV~LL~~~~~evQ~~Av~aL~~L~~~~~e~~~a 441 (2102)
T PLN03200 362 VIEQILVKLLKPRDTKLVQERIIEALASLYGNAYLSRKLNHAEAKKVLVGLITMATADVQEELIRALSSLCCGKGGLWEA 441 (2102)
T ss_pred ccHHHHHHHhCCCCCchhHHHHHHHHHHhcCChHHHHHHHhccchhhhhhhhccCCHHHHHHHHHHHHHHhCCCHHHHHH
Confidence 001112244455566666667889999999999999888889999
Q ss_pred HHHcCChHHHHHhhccCChHHHHHHHHHHHHHhcCChhhHHHHHhcCChHHHHHHhcCCCHHHHHHHHHHHHHhhcCCCC
Q 005044 287 VLAAGALQPVIGLLSSCCSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQSPDVQLREMSAFALGRLAQDMHN 366 (717)
Q Consensus 287 ~~~~g~l~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~l~~~~~l~~L~~~l~~~~~~v~~~a~~~L~~l~~~~~~ 366 (717)
+.+.|+++.|+++|.+++..+++.+++++++++.++++.+..+.+.|++|.|+++|.+++..++++|+|+|+|++.++++
T Consensus 442 Ii~~ggIp~LV~LL~s~s~~iQ~~A~~~L~nLa~~ndenr~aIieaGaIP~LV~LL~s~~~~iqeeAawAL~NLa~~~~q 521 (2102)
T PLN03200 442 LGGREGVQLLISLLGLSSEQQQEYAVALLAILTDEVDESKWAITAAGGIPPLVQLLETGSQKAKEDSATVLWNLCCHSED 521 (2102)
T ss_pred HHHcCcHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHhCCcHH
Confidence 99999999999999999999999999999999988888889999999999999999999999999999999999987665
Q ss_pred chhhH-hcCChHHHHHhhcCCChhHHHHHHHHHHhccCCCcch--HHHHHhcCccccccchhHHhhhHHHHHHHHHHHH-
Q 005044 367 QAGIA-HNGGLVPLLKLLDSKNGSLQHNAAFALYGLADNEDNV--ADFIRVGGVQKLQDGEFIVQATKDCVAKTLKRLE- 442 (717)
Q Consensus 367 ~~~l~-~~~~l~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~--~~l~~~~~i~~L~~~~~~~~~~~~~~~~~~~~l~- 442 (717)
...++ +.|++++|+++|.+++.+++..++++|.+++.+.+.. ..++. .|.... ......+...+.++-
T Consensus 522 ir~iV~~aGAIppLV~LL~sgd~~~q~~Aa~AL~nLi~~~d~~~I~~Lv~-----LLlsdd---~~~~~~aL~vLgnIls 593 (2102)
T PLN03200 522 IRACVESAGAVPALLWLLKNGGPKGQEIAAKTLTKLVRTADAATISQLTA-----LLLGDL---PESKVHVLDVLGHVLS 593 (2102)
T ss_pred HHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHhccchhHHHHHHH-----HhcCCC---hhHHHHHHHHHHHHHh
Confidence 55544 7799999999999999999999999999997654332 12221 111111 011111122222221
Q ss_pred ----------HHhhhchHHHHHHHHhhcchhHHHHHHHHHHhccCCCC-CceeeecCCCHHHHHHHhcCCCchhhhhhHH
Q 005044 443 ----------EKIHGRVLNHLLYLMRVAEKGVQRRVALALAHLCSPDD-QRTIFIDGGGLELLLGLLGSTNPKQQLDGAV 511 (717)
Q Consensus 443 ----------~~~~~~~~~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~-~~~~~~~~~~l~~L~~ll~~~~~~v~~~a~~ 511 (717)
.....+.++.|+.++.++++.++..|+++|.+++.+.. .+..++..|++++|+.++++++.++++.|+|
T Consensus 594 l~~~~d~~~~g~~~~ggL~~Lv~LL~sgs~~ikk~Aa~iLsnL~a~~~d~~~avv~agaIpPLV~LLss~~~~v~keAA~ 673 (2102)
T PLN03200 594 VASLEDLVREGSAANDALRTLIQLLSSSKEETQEKAASVLADIFSSRQDLCESLATDEIINPCIKLLTNNTEAVATQSAR 673 (2102)
T ss_pred hcchhHHHHHhhhccccHHHHHHHHcCCCHHHHHHHHHHHHHHhcCChHHHHHHHHcCCHHHHHHHHhcCChHHHHHHHH
Confidence 11245799999999999999999999999999987655 5677889999999999999999999999999
Q ss_pred HHHHhhhc
Q 005044 512 ALFKLANK 519 (717)
Q Consensus 512 ~l~~L~~~ 519 (717)
+|.+++..
T Consensus 674 AL~nL~~~ 681 (2102)
T PLN03200 674 ALAALSRS 681 (2102)
T ss_pred HHHHHHhC
Confidence 99999974
No 3
>KOG0166 consensus Karyopherin (importin) alpha [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=5.8e-36 Score=299.76 Aligned_cols=324 Identities=24% Similarity=0.349 Sum_probs=291.9
Q ss_pred HHHHHHHhhhhhccccchHHHHHHHHHHHHHHHHhhc-ChhhHHHHHhCCChHHHHHhhcCCCCCccccCCCccchHHHh
Q 005044 56 LSEVSAQVNVLNTTFSWLEADRAAAKRATHVLAELAK-NEEVVNWIVEGGAVPALVKHLQAPPTSEADRNLKPFEHEVEK 134 (717)
Q Consensus 56 ~~~i~~l~~~L~~~~~~~~~~~~~~~~a~~~L~~l~~-~~~~~~~~~~~g~i~~L~~lL~~~~~~~~~~~~~~~~~~v~~ 134 (717)
...+|.+++.|... .++.++++|+|+|.++++ +.+....++++|++|.++.++.+++. .|++
T Consensus 108 ~G~v~~lV~~l~~~-----~~~~lq~eAAWaLTnIAsgtse~T~~vv~agavp~fi~Ll~s~~~------------~v~e 170 (514)
T KOG0166|consen 108 SGVVPRLVEFLSRD-----DNPTLQFEAAWALTNIASGTSEQTKVVVDAGAVPIFIQLLSSPSA------------DVRE 170 (514)
T ss_pred cCcHHHHHHHHccC-----CChhHHHHHHHHHHHHhcCchhhccccccCCchHHHHHHhcCCcH------------HHHH
Confidence 35667777777533 234579999999999999 68888899999999999999999988 9999
Q ss_pred HHHHHHHHhc-CChhhHHHHHhCCChHHHHHHHhccccCCCccchhHHHHHHHHHHHHHhhcCchhhhHHHhcCCcHHHH
Q 005044 135 GSAFALGLLA-VKPEHQQLIVDNGALSHLVNLLKRHMDSNCSRAVNSVIRRAADAITNLAHENSSIKTRVRMEGGIPPLV 213 (717)
Q Consensus 135 ~a~~~L~~l~-~~~~~~~~~~~~~~i~~L~~lL~~~~~~~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~ 213 (717)
+|.|+|+|++ +++.+|+.+++.|+++.|+.++...... .+.+.+.|+|.|||.+..+....-....++|.|.
T Consensus 171 QavWALgNIagds~~~Rd~vl~~g~l~pLl~~l~~~~~~-------~~lRn~tW~LsNlcrgk~P~P~~~~v~~iLp~L~ 243 (514)
T KOG0166|consen 171 QAVWALGNIAGDSPDCRDYVLSCGALDPLLRLLNKSDKL-------SMLRNATWTLSNLCRGKNPSPPFDVVAPILPALL 243 (514)
T ss_pred HHHHHHhccccCChHHHHHHHhhcchHHHHHHhccccch-------HHHHHHHHHHHHHHcCCCCCCcHHHHHHHHHHHH
Confidence 9999999999 9999999999999999999999887652 7899999999999987644433334456889999
Q ss_pred HhhcCCCHHHHHHHHHHHHHhhccChhhHHHHHhcCCHHHHHHHHcCCCHHHHHHHHHHHHHhhcCChHHHHHHHHcCCh
Q 005044 214 ELLEFTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSEDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGAL 293 (717)
Q Consensus 214 ~ll~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~l 293 (717)
.++.+.|+++...|||++++|+.+.++....+++.|+++.|+.+|.+.++.++..|+++++|++.+++...+.++..|++
T Consensus 244 ~ll~~~D~~Vl~Da~WAlsyLsdg~ne~iq~vi~~gvv~~LV~lL~~~~~~v~~PaLRaiGNIvtG~d~QTq~vi~~~~L 323 (514)
T KOG0166|consen 244 RLLHSTDEEVLTDACWALSYLTDGSNEKIQMVIDAGVVPRLVDLLGHSSPKVVTPALRAIGNIVTGSDEQTQVVINSGAL 323 (514)
T ss_pred HHHhcCCHHHHHHHHHHHHHHhcCChHHHHHHHHccchHHHHHHHcCCCcccccHHHhhccceeeccHHHHHHHHhcChH
Confidence 99999999999999999999999899999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhhc-cCChHHHHHHHHHHHHHhcCChhhHHHHHhcCChHHHHHHhcCCCHHHHHHHHHHHHHhhcCCCCc--hhh
Q 005044 294 QPVIGLLS-SCCSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQSPDVQLREMSAFALGRLAQDMHNQ--AGI 370 (717)
Q Consensus 294 ~~L~~ll~-~~~~~~~~~a~~~L~~l~~~~~~~~~~l~~~~~l~~L~~~l~~~~~~v~~~a~~~L~~l~~~~~~~--~~l 370 (717)
+.|..++. ++...++++|+|+++|++.++....+.+++.|++|.|+.+|+..+.++|.+|+|+++|++.+.... ..+
T Consensus 324 ~~l~~ll~~s~~~~ikkEAcW~iSNItAG~~~qiqaVida~l~p~Li~~l~~~ef~~rKEAawaIsN~ts~g~~~qi~yL 403 (514)
T KOG0166|consen 324 PVLSNLLSSSPKESIKKEACWTISNITAGNQEQIQAVIDANLIPVLINLLQTAEFDIRKEAAWAISNLTSSGTPEQIKYL 403 (514)
T ss_pred HHHHHHhccCcchhHHHHHHHHHHHhhcCCHHHHHHHHHcccHHHHHHHHhccchHHHHHHHHHHHhhcccCCHHHHHHH
Confidence 99999999 555669999999999999999999999999999999999999999999999999999999755432 578
Q ss_pred HhcCChHHHHHhhcCCChhHHHHHHHHHHhccC
Q 005044 371 AHNGGLVPLLKLLDSKNGSLQHNAAFALYGLAD 403 (717)
Q Consensus 371 ~~~~~l~~L~~ll~~~~~~v~~~a~~~L~~l~~ 403 (717)
++.|.++++..+|.-.+..+...++.+|.||-.
T Consensus 404 v~~giI~plcdlL~~~D~~ii~v~Ld~l~nil~ 436 (514)
T KOG0166|consen 404 VEQGIIKPLCDLLTCPDVKIILVALDGLENILK 436 (514)
T ss_pred HHcCCchhhhhcccCCChHHHHHHHHHHHHHHH
Confidence 999999999999988899999999999999853
No 4
>KOG0166 consensus Karyopherin (importin) alpha [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=2.7e-35 Score=294.97 Aligned_cols=403 Identities=19% Similarity=0.291 Sum_probs=338.2
Q ss_pred HHHHhhhhhccccchHHHHHHHHHHHHHHHHhhcC--hhhHHHHHhCCChHHHHHhhcCCCCCccccCCCccchHHHhHH
Q 005044 59 VSAQVNVLNTTFSWLEADRAAAKRATHVLAELAKN--EEVVNWIVEGGAVPALVKHLQAPPTSEADRNLKPFEHEVEKGS 136 (717)
Q Consensus 59 i~~l~~~L~~~~~~~~~~~~~~~~a~~~L~~l~~~--~~~~~~~~~~g~i~~L~~lL~~~~~~~~~~~~~~~~~~v~~~a 136 (717)
.+.++..+.+. +...+..+...++.+... ......++..|++|.++..|...+. |.++..|
T Consensus 68 ~~~~~~~~~S~------~~~~q~~a~~~~rkllS~~~~ppi~~vi~~G~v~~lV~~l~~~~~-----------~~lq~eA 130 (514)
T KOG0166|consen 68 LELMLAALYSD------DPQQQLTATQAFRKLLSKERNPPIDEVIQSGVVPRLVEFLSRDDN-----------PTLQFEA 130 (514)
T ss_pred hHHHHHHHhCC------CHHHHHHHHHHHHHHHccCCCCCHHHHHHcCcHHHHHHHHccCCC-----------hhHHHHH
Confidence 55555555544 333478888888876662 2334455666999999999986553 2999999
Q ss_pred HHHHHHhc-CChhhHHHHHhCCChHHHHHHHhccccCCCccchhHHHHHHHHHHHHHhhcCchhhhHHHhcCCcHHHHHh
Q 005044 137 AFALGLLA-VKPEHQQLIVDNGALSHLVNLLKRHMDSNCSRAVNSVIRRAADAITNLAHENSSIKTRVRMEGGIPPLVEL 215 (717)
Q Consensus 137 ~~~L~~l~-~~~~~~~~~~~~~~i~~L~~lL~~~~~~~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~l 215 (717)
+|+|.|++ .+.+....+++.|+++.++.++.+.+. .+++.|+|+|+|++.+++..|..+...|++++|+.+
T Consensus 131 AWaLTnIAsgtse~T~~vv~agavp~fi~Ll~s~~~--------~v~eQavWALgNIagds~~~Rd~vl~~g~l~pLl~~ 202 (514)
T KOG0166|consen 131 AWALTNIASGTSEQTKVVVDAGAVPIFIQLLSSPSA--------DVREQAVWALGNIAGDSPDCRDYVLSCGALDPLLRL 202 (514)
T ss_pred HHHHHHHhcCchhhccccccCCchHHHHHHhcCCcH--------HHHHHHHHHHhccccCChHHHHHHHhhcchHHHHHH
Confidence 99999999 888888999999999999999999887 999999999999999999999999999999999999
Q ss_pred hcCCCH-HHHHHHHHHHHHhhccChhhHHHHHhcCCHHHHHHHHcCCCHHHHHHHHHHHHHhhcCChHHHHHHHHcCChH
Q 005044 216 LEFTDT-KVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSEDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQ 294 (717)
Q Consensus 216 l~~~~~-~v~~~a~~~L~~L~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~l~ 294 (717)
+..++. ...+.+.|+|.|||.+.......-.-..++|.|..++.+.|++|...|+|+|++|+.+..+..+.+++.|+++
T Consensus 203 l~~~~~~~~lRn~tW~LsNlcrgk~P~P~~~~v~~iLp~L~~ll~~~D~~Vl~Da~WAlsyLsdg~ne~iq~vi~~gvv~ 282 (514)
T KOG0166|consen 203 LNKSDKLSMLRNATWTLSNLCRGKNPSPPFDVVAPILPALLRLLHSTDEEVLTDACWALSYLTDGSNEKIQMVIDAGVVP 282 (514)
T ss_pred hccccchHHHHHHHHHHHHHHcCCCCCCcHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhcCChHHHHHHHHccchH
Confidence 987665 7889999999999997632222222235899999999999999999999999999988888889999999999
Q ss_pred HHHHhhccCChHHHHHHHHHHHHHhcCChhhHHHHHhcCChHHHHHHhc-CCCHHHHHHHHHHHHHhhcCCCC-chhhHh
Q 005044 295 PVIGLLSSCCSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQ-SPDVQLREMSAFALGRLAQDMHN-QAGIAH 372 (717)
Q Consensus 295 ~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~l~~~~~l~~L~~~l~-~~~~~v~~~a~~~L~~l~~~~~~-~~~l~~ 372 (717)
.|+.+|.+.+..++..|+.+++|++.+++...+.+++.|+++.|..++. ++...++++|||+++|++.+... ...+++
T Consensus 283 ~LV~lL~~~~~~v~~PaLRaiGNIvtG~d~QTq~vi~~~~L~~l~~ll~~s~~~~ikkEAcW~iSNItAG~~~qiqaVid 362 (514)
T KOG0166|consen 283 RLVDLLGHSSPKVVTPALRAIGNIVTGSDEQTQVVINSGALPVLSNLLSSSPKESIKKEACWTISNITAGNQEQIQAVID 362 (514)
T ss_pred HHHHHHcCCCcccccHHHhhccceeeccHHHHHHHHhcChHHHHHHHhccCcchhHHHHHHHHHHHhhcCCHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999998 56667999999999999996654 467889
Q ss_pred cCChHHHHHhhcCCChhHHHHHHHHHHhccCC--CcchHHHHHhcCccccccchhHHhhhHHHHHHHHHHHHHHhhhchH
Q 005044 373 NGGLVPLLKLLDSKNGSLQHNAAFALYGLADN--EDNVADFIRVGGVQKLQDGEFIVQATKDCVAKTLKRLEEKIHGRVL 450 (717)
Q Consensus 373 ~~~l~~L~~ll~~~~~~v~~~a~~~L~~l~~~--~~~~~~l~~~~~i~~L~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 450 (717)
.|.++.|+.+++..+-.++..|+|++.|++.+ ++....+++.| ++
T Consensus 363 a~l~p~Li~~l~~~ef~~rKEAawaIsN~ts~g~~~qi~yLv~~g---------------------------------iI 409 (514)
T KOG0166|consen 363 ANLIPVLINLLQTAEFDIRKEAAWAISNLTSSGTPEQIKYLVEQG---------------------------------II 409 (514)
T ss_pred cccHHHHHHHHhccchHHHHHHHHHHHhhcccCCHHHHHHHHHcC---------------------------------Cc
Confidence 99999999999999999999999999999764 33334444444 67
Q ss_pred HHHHHHHhhcchhHHHHHHHHHHhccCC---------CCCceeeecCCCHHHHHHHhcCCCchhhhhhHHHHHHhhhc
Q 005044 451 NHLLYLMRVAEKGVQRRVALALAHLCSP---------DDQRTIFIDGGGLELLLGLLGSTNPKQQLDGAVALFKLANK 519 (717)
Q Consensus 451 ~~L~~ll~~~~~~v~~~a~~aL~~l~~~---------~~~~~~~~~~~~l~~L~~ll~~~~~~v~~~a~~~l~~L~~~ 519 (717)
+.+..+|...+..+...++-+|.++-.. ......+.+.||+..+..|-.+.+.++-..|...+.+-...
T Consensus 410 ~plcdlL~~~D~~ii~v~Ld~l~nil~~~e~~~~~~~n~~~~~IEe~ggldkiE~LQ~hen~~Iy~~A~~II~~yf~~ 487 (514)
T KOG0166|consen 410 KPLCDLLTCPDVKIILVALDGLENILKVGEAEKNRGTNPLAIMIEEAGGLDKIENLQSHENEEIYKKAYKIIDTYFSE 487 (514)
T ss_pred hhhhhcccCCChHHHHHHHHHHHHHHHHHHHhccccccHHHHHHHHccChhHHHHhhccccHHHHHHHHHHHHHhcCC
Confidence 7788888888888888888888888422 12344667889999999999999999888888777665543
No 5
>COG5064 SRP1 Karyopherin (importin) alpha [Intracellular trafficking and secretion]
Probab=100.00 E-value=7.7e-36 Score=274.80 Aligned_cols=376 Identities=19% Similarity=0.265 Sum_probs=312.6
Q ss_pred HHHHHHHHhhhhhccccchHHHHHHHHHHHHHHHHhhc-ChhhHHHHHhCCChHHHHHhhcCCCCCccccCCCccchHHH
Q 005044 55 LLSEVSAQVNVLNTTFSWLEADRAAAKRATHVLAELAK-NEEVVNWIVEGGAVPALVKHLQAPPTSEADRNLKPFEHEVE 133 (717)
Q Consensus 55 ~~~~i~~l~~~L~~~~~~~~~~~~~~~~a~~~L~~l~~-~~~~~~~~~~~g~i~~L~~lL~~~~~~~~~~~~~~~~~~v~ 133 (717)
-...+|++++++... +....+++|+|+|.|+++ +......+++.|++|.++++|.++.. +|+
T Consensus 112 daGvVpRfvefm~~~-----q~~mlqfEAaWalTNiaSGtt~QTkvVvd~~AVPlfiqlL~s~~~------------~V~ 174 (526)
T COG5064 112 DAGVVPRFVEFMDEI-----QRDMLQFEAAWALTNIASGTTQQTKVVVDAGAVPLFIQLLSSTED------------DVR 174 (526)
T ss_pred hccccHHHHHHHHhc-----chhHHHHHHHHHHhhhccCcccceEEEEeCCchHHHHHHHcCchH------------HHH
Confidence 345778888888643 233468999999999999 56777778899999999999999888 999
Q ss_pred hHHHHHHHHhc-CChhhHHHHHhCCChHHHHHHHhccccCCCccchhHHHHHHHHHHHHHhhcCchhhhHHHhcCCcHHH
Q 005044 134 KGSAFALGLLA-VKPEHQQLIVDNGALSHLVNLLKRHMDSNCSRAVNSVIRRAADAITNLAHENSSIKTRVRMEGGIPPL 212 (717)
Q Consensus 134 ~~a~~~L~~l~-~~~~~~~~~~~~~~i~~L~~lL~~~~~~~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L 212 (717)
+++.|+|+|++ +++.+|+.+++.|++..++.++.++... ..+.+.+.|.|.|||.+..+...+-.-...+|.|
T Consensus 175 eQavWALGNiAGDS~~~RD~vL~~galeplL~ll~ss~~~------ismlRn~TWtLSNlcRGknP~P~w~~isqalpiL 248 (526)
T COG5064 175 EQAVWALGNIAGDSEGCRDYVLQCGALEPLLGLLLSSAIH------ISMLRNATWTLSNLCRGKNPPPDWSNISQALPIL 248 (526)
T ss_pred HHHHHHhccccCCchhHHHHHHhcCchHHHHHHHHhccch------HHHHHHhHHHHHHhhCCCCCCCchHHHHHHHHHH
Confidence 99999999999 9999999999999999999999866442 2789999999999998654444444444578999
Q ss_pred HHhhcCCCHHHHHHHHHHHHHhhccChhhHHHHHhcCCHHHHHHHHcCCCHHHHHHHHHHHHHhhcCChHHHHHHHHcCC
Q 005044 213 VELLEFTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSEDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGA 292 (717)
Q Consensus 213 ~~ll~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~ 292 (717)
.+++.+.++++...|||++..|+.+..+....+.+.|+.+.|+++|.+++..++..|++.++|+..+++...+.++..|+
T Consensus 249 ~KLiys~D~evlvDA~WAiSYlsDg~~E~i~avld~g~~~RLvElLs~~sa~iqtPalR~vGNIVTG~D~QTqviI~~G~ 328 (526)
T COG5064 249 AKLIYSRDPEVLVDACWAISYLSDGPNEKIQAVLDVGIPGRLVELLSHESAKIQTPALRSVGNIVTGSDDQTQVIINCGA 328 (526)
T ss_pred HHHHhhcCHHHHHHHHHHHHHhccCcHHHHHHHHhcCCcHHHHHHhcCccccccCHHHHhhcCeeecCccceehheeccc
Confidence 99999999999999999999999888888999999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHhhccCChHHHHHHHHHHHHHhcCChhhHHHHHhcCChHHHHHHhcCCCHHHHHHHHHHHHHhhcCCCCc----h
Q 005044 293 LQPVIGLLSSCCSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQSPDVQLREMSAFALGRLAQDMHNQ----A 368 (717)
Q Consensus 293 l~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~l~~~~~l~~L~~~l~~~~~~v~~~a~~~L~~l~~~~~~~----~ 368 (717)
++.+..+|.++...+++++||+++|+..++.+..+.+++.+++|+|+.+|...+..++++|||++.|.+.+..++ .
T Consensus 329 L~a~~~lLs~~ke~irKEaCWTiSNITAGnteqiqavid~nliPpLi~lls~ae~k~kKEACWAisNatsgg~~~PD~ir 408 (526)
T COG5064 329 LKAFRSLLSSPKENIRKEACWTISNITAGNTEQIQAVIDANLIPPLIHLLSSAEYKIKKEACWAISNATSGGLNRPDIIR 408 (526)
T ss_pred HHHHHHHhcChhhhhhhhhheeecccccCCHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHHHHHhhhccccCCchHHH
Confidence 999999999999999999999999999999999999999999999999999999999999999999999866554 4
Q ss_pred hhHhcCChHHHHHhhcCCChhHHHHHHHHHHhccCCCcchHHHHHhcCccccccchhHHhhhHHHHHHHHHHH-HHHh-h
Q 005044 369 GIAHNGGLVPLLKLLDSKNGSLQHNAAFALYGLADNEDNVADFIRVGGVQKLQDGEFIVQATKDCVAKTLKRL-EEKI-H 446 (717)
Q Consensus 369 ~l~~~~~l~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~l~~~~~i~~L~~~~~~~~~~~~~~~~~~~~l-~~~~-~ 446 (717)
.++..|++.+|..+|.-.+..+.+.++.++.|+....+.-+...... + ++ ...+ .
T Consensus 409 yLv~qG~IkpLc~~L~~~dNkiiev~LD~~eniLk~Ge~d~~~~~~n-i----------------------n~ya~~vE~ 465 (526)
T COG5064 409 YLVSQGFIKPLCDLLDVVDNKIIEVALDAIENILKVGEQDRLRYGKN-I----------------------NIYAVYVEK 465 (526)
T ss_pred HHHHccchhHHHHHHhccCccchhhhHHHHHHHHhhhhHHHHhccCC-c----------------------cHHHHHHHh
Confidence 57889999999999988887888888999988864322211100000 0 00 0111 2
Q ss_pred hchHHHHHHHHhhcchhHHHHHHHHHHhcc
Q 005044 447 GRVLNHLLYLMRVAEKGVQRRVALALAHLC 476 (717)
Q Consensus 447 ~~~~~~L~~ll~~~~~~v~~~a~~aL~~l~ 476 (717)
.+.+..+-.+=.+.+..+-..|-..+-.+-
T Consensus 466 Aggmd~I~~~Q~s~n~~iy~KAYsIIe~fF 495 (526)
T COG5064 466 AGGMDAIHGLQDSVNRTIYDKAYSIIEKFF 495 (526)
T ss_pred cccHHHHHHhhhccccHHHHHHHHHHHHHc
Confidence 445656666666667777777766666554
No 6
>COG5064 SRP1 Karyopherin (importin) alpha [Intracellular trafficking and secretion]
Probab=100.00 E-value=1e-35 Score=273.93 Aligned_cols=418 Identities=20% Similarity=0.276 Sum_probs=340.4
Q ss_pred HHHHHHHHHhhhhhccccchHHHHHHHHHHHHHHHHhhc--ChhhHHHHHhCCChHHHHHhhcCCCCCccccCCCccchH
Q 005044 54 ALLSEVSAQVNVLNTTFSWLEADRAAAKRATHVLAELAK--NEEVVNWIVEGGAVPALVKHLQAPPTSEADRNLKPFEHE 131 (717)
Q Consensus 54 ~~~~~i~~l~~~L~~~~~~~~~~~~~~~~a~~~L~~l~~--~~~~~~~~~~~g~i~~L~~lL~~~~~~~~~~~~~~~~~~ 131 (717)
...+..|.+.+.|.+. |-..+..|..-++.+.+ +...-..++++|++|.+++++.....+ .
T Consensus 68 q~~~elp~lt~~l~Sd------Die~q~qav~kFR~~LS~E~~PPIq~VIdaGvVpRfvefm~~~q~~-----------m 130 (526)
T COG5064 68 QFYSELPQLTQQLFSD------DIEQQLQAVYKFRKLLSKETSPPIQPVIDAGVVPRFVEFMDEIQRD-----------M 130 (526)
T ss_pred HhhhhhHHHHHHHhhh------HHHHHHHHHHHHHHHhccccCCCchhHHhccccHHHHHHHHhcchh-----------H
Confidence 3445567776666544 55557888888888665 444456788999999999999654432 7
Q ss_pred HHhHHHHHHHHhc-CChhhHHHHHhCCChHHHHHHHhccccCCCccchhHHHHHHHHHHHHHhhcCchhhhHHHhcCCcH
Q 005044 132 VEKGSAFALGLLA-VKPEHQQLIVDNGALSHLVNLLKRHMDSNCSRAVNSVIRRAADAITNLAHENSSIKTRVRMEGGIP 210 (717)
Q Consensus 132 v~~~a~~~L~~l~-~~~~~~~~~~~~~~i~~L~~lL~~~~~~~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~ 210 (717)
.+-.|+|+|.|++ ......+.+++.|++|.++.+|.+... ++++.++|+|+|++.+++..|..+.+.|.+.
T Consensus 131 lqfEAaWalTNiaSGtt~QTkvVvd~~AVPlfiqlL~s~~~--------~V~eQavWALGNiAGDS~~~RD~vL~~gale 202 (526)
T COG5064 131 LQFEAAWALTNIASGTTQQTKVVVDAGAVPLFIQLLSSTED--------DVREQAVWALGNIAGDSEGCRDYVLQCGALE 202 (526)
T ss_pred HHHHHHHHHhhhccCcccceEEEEeCCchHHHHHHHcCchH--------HHHHHHHHHhccccCCchhHHHHHHhcCchH
Confidence 8889999999999 555555667899999999999998877 9999999999999999999999999999999
Q ss_pred HHHHhhcCCC--HHHHHHHHHHHHHhhccChhhHHHHHhcCCHHHHHHHHcCCCHHHHHHHHHHHHHhhcCChHHHHHHH
Q 005044 211 PLVELLEFTD--TKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSEDSAIHYEAVGVIGNLVHSSPNIKKEVL 288 (717)
Q Consensus 211 ~L~~ll~~~~--~~v~~~a~~~L~~L~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~ 288 (717)
+++.++.++- ..+.+.+.|.|.|||.+......--.-...+|.|.+++.+.++++...|+|+|+.++.+..+..+.++
T Consensus 203 plL~ll~ss~~~ismlRn~TWtLSNlcRGknP~P~w~~isqalpiL~KLiys~D~evlvDA~WAiSYlsDg~~E~i~avl 282 (526)
T COG5064 203 PLLGLLLSSAIHISMLRNATWTLSNLCRGKNPPPDWSNISQALPILAKLIYSRDPEVLVDACWAISYLSDGPNEKIQAVL 282 (526)
T ss_pred HHHHHHHhccchHHHHHHhHHHHHHhhCCCCCCCchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHhccCcHHHHHHHH
Confidence 9999997754 47889999999999986432222211223689999999999999999999999999988888889999
Q ss_pred HcCChHHHHHhhccCChHHHHHHHHHHHHHhcCChhhHHHHHhcCChHHHHHHhcCCCHHHHHHHHHHHHHhhcCCCCc-
Q 005044 289 AAGALQPVIGLLSSCCSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQSPDVQLREMSAFALGRLAQDMHNQ- 367 (717)
Q Consensus 289 ~~g~l~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~l~~~~~l~~L~~~l~~~~~~v~~~a~~~L~~l~~~~~~~- 367 (717)
+.|..+.|+++|.+++..++..++..++|+..++......+++.|+++.+..+|.++...+|+++||++.|++.+...+
T Consensus 283 d~g~~~RLvElLs~~sa~iqtPalR~vGNIVTG~D~QTqviI~~G~L~a~~~lLs~~ke~irKEaCWTiSNITAGnteqi 362 (526)
T COG5064 283 DVGIPGRLVELLSHESAKIQTPALRSVGNIVTGSDDQTQVIINCGALKAFRSLLSSPKENIRKEACWTISNITAGNTEQI 362 (526)
T ss_pred hcCCcHHHHHHhcCccccccCHHHHhhcCeeecCccceehheecccHHHHHHHhcChhhhhhhhhheeecccccCCHHHH
Confidence 9999999999999999999999999999999888888888999999999999999988899999999999999866544
Q ss_pred hhhHhcCChHHHHHhhcCCChhHHHHHHHHHHhccCCCcchHHHHHhcCccccccchhHHhhhHHHHHHHHHHHHHHhhh
Q 005044 368 AGIAHNGGLVPLLKLLDSKNGSLQHNAAFALYGLADNEDNVADFIRVGGVQKLQDGEFIVQATKDCVAKTLKRLEEKIHG 447 (717)
Q Consensus 368 ~~l~~~~~l~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~l~~~~~i~~L~~~~~~~~~~~~~~~~~~~~l~~~~~~ 447 (717)
..+++.+.+|+|+.+|.+.+..+++.|||++.|.+.+..+++.+++ ..++.
T Consensus 363 qavid~nliPpLi~lls~ae~k~kKEACWAisNatsgg~~~PD~ir-----------------------------yLv~q 413 (526)
T COG5064 363 QAVIDANLIPPLIHLLSSAEYKIKKEACWAISNATSGGLNRPDIIR-----------------------------YLVSQ 413 (526)
T ss_pred HHHHhcccchHHHHHHHHHHHHHHHHHHHHHHhhhccccCCchHHH-----------------------------HHHHc
Confidence 6788999999999999999999999999999999765444332221 22345
Q ss_pred chHHHHHHHHhhcchhHHHHHHHHHHhccCCCC------------CceeeecCCCHHHHHHHhcCCCchhhhhhHHHHHH
Q 005044 448 RVLNHLLYLMRVAEKGVQRRVALALAHLCSPDD------------QRTIFIDGGGLELLLGLLGSTNPKQQLDGAVALFK 515 (717)
Q Consensus 448 ~~~~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~------------~~~~~~~~~~l~~L~~ll~~~~~~v~~~a~~~l~~ 515 (717)
|++..|..+|...+..+-..++-++.|+....+ ....+.+.||+..+..+-++.+..+-..|...+..
T Consensus 414 G~IkpLc~~L~~~dNkiiev~LD~~eniLk~Ge~d~~~~~~nin~ya~~vE~Aggmd~I~~~Q~s~n~~iy~KAYsIIe~ 493 (526)
T COG5064 414 GFIKPLCDLLDVVDNKIIEVALDAIENILKVGEQDRLRYGKNINIYAVYVEKAGGMDAIHGLQDSVNRTIYDKAYSIIEK 493 (526)
T ss_pred cchhHHHHHHhccCccchhhhHHHHHHHHhhhhHHHHhccCCccHHHHHHHhcccHHHHHHhhhccccHHHHHHHHHHHH
Confidence 577778888888777676677778877753221 22234458999999999999999999999888888
Q ss_pred hhhcccccCc
Q 005044 516 LANKATTLSS 525 (717)
Q Consensus 516 L~~~~~~~~~ 525 (717)
........+.
T Consensus 494 fFgeeD~vd~ 503 (526)
T COG5064 494 FFGEEDAVDE 503 (526)
T ss_pred Hcccchhhhh
Confidence 8766544443
No 7
>KOG4224 consensus Armadillo repeat protein VAC8 required for vacuole fusion, inheritance and cytosol-to-vacuole protein targeting [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=3.5e-34 Score=266.23 Aligned_cols=377 Identities=27% Similarity=0.359 Sum_probs=337.7
Q ss_pred CChHHHHHhhcCCCCCccccCCCccchHHHhHHHHHHHHhcCChhhHHHHHhCCChHHHHHHHhccccCCCccchhHHHH
Q 005044 104 GAVPALVKHLQAPPTSEADRNLKPFEHEVEKGSAFALGLLAVKPEHQQLIVDNGALSHLVNLLKRHMDSNCSRAVNSVIR 183 (717)
Q Consensus 104 g~i~~L~~lL~~~~~~~~~~~~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~i~~L~~lL~~~~~~~~~~~~~~~~~ 183 (717)
...+.++.++++.+. .++..+..+++|++-+.+++..++..+++..|+..+..+.. +++.
T Consensus 85 es~epvl~llqs~d~------------~Iq~aa~~alGnlAVn~enk~liv~l~Gl~~Li~qmmtd~v--------evqc 144 (550)
T KOG4224|consen 85 ESNEPVLALLQSCDK------------CIQCAAGEALGNLAVNMENKGLIVSLLGLDLLILQMMTDGV--------EVQC 144 (550)
T ss_pred hhhhHHHHHHhCcch------------hhhhhhhhhhccceeccCCceEEEeccChHHHHHHhcCCCc--------EEEe
Confidence 456677778888877 99999999999999777888888899999998887777665 8999
Q ss_pred HHHHHHHHHhhcCchhhhHHHhcCCcHHHHHhhcCCCHHHHHHHHHHHHHhhccChhhHHHHHhcCCHHHHHHHHcCCCH
Q 005044 184 RAADAITNLAHENSSIKTRVRMEGGIPPLVELLEFTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSEDS 263 (717)
Q Consensus 184 ~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~g~i~~L~~ll~~~~~ 263 (717)
.+..+++||+.- ..++..+...|++.++.++-++.+..++..+..+|.+++. ..++++.++..|++|.|+.++++++.
T Consensus 145 naVgCitnLaT~-d~nk~kiA~sGaL~pltrLakskdirvqrnatgaLlnmTh-s~EnRr~LV~aG~lpvLVsll~s~d~ 222 (550)
T KOG4224|consen 145 NAVGCITNLATF-DSNKVKIARSGALEPLTRLAKSKDIRVQRNATGALLNMTH-SRENRRVLVHAGGLPVLVSLLKSGDL 222 (550)
T ss_pred eehhhhhhhhcc-ccchhhhhhccchhhhHhhcccchhhHHHHHHHHHHHhhh-hhhhhhhhhccCCchhhhhhhccCCh
Confidence 999999999984 6788889999999999998899999999999999999996 89999999999999999999999999
Q ss_pred HHHHHHHHHHHHhhcCChHHHHHHHHcC--ChHHHHHhhccCChHHHHHHHHHHHHHhcCChhhHHHHHhcCChHHHHHH
Q 005044 264 AIHYEAVGVIGNLVHSSPNIKKEVLAAG--ALQPVIGLLSSCCSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEM 341 (717)
Q Consensus 264 ~v~~~a~~~L~~l~~~~~~~~~~~~~~g--~l~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~l~~~~~l~~L~~~ 341 (717)
+++..++.+|++++.. ...++.+.+.+ +++.|++++.+++++++-.|..+|+|+++ ++.++..+++.|.+|.++++
T Consensus 223 dvqyycttaisnIaVd-~~~Rk~Laqaep~lv~~Lv~Lmd~~s~kvkcqA~lALrnlas-dt~Yq~eiv~ag~lP~lv~L 300 (550)
T KOG4224|consen 223 DVQYYCTTAISNIAVD-RRARKILAQAEPKLVPALVDLMDDGSDKVKCQAGLALRNLAS-DTEYQREIVEAGSLPLLVEL 300 (550)
T ss_pred hHHHHHHHHhhhhhhh-HHHHHHHHhcccchHHHHHHHHhCCChHHHHHHHHHHhhhcc-cchhhhHHHhcCCchHHHHH
Confidence 9999999999999764 55678888877 99999999999999999999999999975 57788889999999999999
Q ss_pred hcCCCHHHHHHHHHHHHHhhcCCCCchhhHhcCChHHHHHhhcCCC-hhHHHHHHHHHHhccC-CCcchHHHHHhcCccc
Q 005044 342 LQSPDVQLREMSAFALGRLAQDMHNQAGIAHNGGLVPLLKLLDSKN-GSLQHNAAFALYGLAD-NEDNVADFIRVGGVQK 419 (717)
Q Consensus 342 l~~~~~~v~~~a~~~L~~l~~~~~~~~~l~~~~~l~~L~~ll~~~~-~~v~~~a~~~L~~l~~-~~~~~~~l~~~~~i~~ 419 (717)
++++.-....+.+.++.|++-++-+...+++.|++.+|+++|.-++ .+++..|..+|+||+. +..++..+.+.|
T Consensus 301 lqs~~~plilasVaCIrnisihplNe~lI~dagfl~pLVrlL~~~dnEeiqchAvstLrnLAasse~n~~~i~esg---- 376 (550)
T KOG4224|consen 301 LQSPMGPLILASVACIRNISIHPLNEVLIADAGFLRPLVRLLRAGDNEEIQCHAVSTLRNLAASSEHNVSVIRESG---- 376 (550)
T ss_pred HhCcchhHHHHHHHHHhhcccccCcccceecccchhHHHHHHhcCCchhhhhhHHHHHHHHhhhhhhhhHHHhhcC----
Confidence 9998777778889999999999999999999999999999998754 5599999999999976 677777888877
Q ss_pred cccchhHHhhhHHHHHHHHHHHHHHhhhchHHHHHHHHhhcchhHHHHHHHHHHhccCCCCCceeeecCCCHHHHHHHhc
Q 005044 420 LQDGEFIVQATKDCVAKTLKRLEEKIHGRVLNHLLYLMRVAEKGVQRRVALALAHLCSPDDQRTIFIDGGGLELLLGLLG 499 (717)
Q Consensus 420 L~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~~~~~~l~~L~~ll~ 499 (717)
.++.|..++.++...+|...-.++..++..+..+..+.+.|.++.|+.++.
T Consensus 377 -----------------------------Ai~kl~eL~lD~pvsvqseisac~a~Lal~d~~k~~lld~gi~~iLIp~t~ 427 (550)
T KOG4224|consen 377 -----------------------------AIPKLIELLLDGPVSVQSEISACIAQLALNDNDKEALLDSGIIPILIPWTG 427 (550)
T ss_pred -----------------------------chHHHHHHHhcCChhHHHHHHHHHHHHHhccccHHHHhhcCCcceeecccC
Confidence 555688999999999999999999999999888889999999999999999
Q ss_pred CCCchhhhhhHHHHHHhhhcccccCccCCCCCCCCccc
Q 005044 500 STNPKQQLDGAVALFKLANKATTLSSVDAAPPSPTPQV 537 (717)
Q Consensus 500 ~~~~~v~~~a~~~l~~L~~~~~~~~~~~~~~~~~~~~~ 537 (717)
+.+.+++-.|+.+|.|++++...+..+...|.+|.+.+
T Consensus 428 s~s~Ev~gNaAaAL~Nlss~v~~YarviEawd~P~~gi 465 (550)
T KOG4224|consen 428 SESEEVRGNAAAALINLSSDVEHYARVIEAWDHPVQGI 465 (550)
T ss_pred ccchhhcccHHHHHHhhhhhhHHHHHHHHHhcCcchhH
Confidence 99999999999999999998777777777777775443
No 8
>KOG4224 consensus Armadillo repeat protein VAC8 required for vacuole fusion, inheritance and cytosol-to-vacuole protein targeting [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=9.5e-33 Score=256.72 Aligned_cols=387 Identities=22% Similarity=0.266 Sum_probs=340.6
Q ss_pred HHHHHHHHHHHHHHhhcChhhHHHHHhCCChHHHHHhhcCCCCCccccCCCccchHHHhHHHHHHHHhcCChhhHHHHHh
Q 005044 76 DRAAAKRATHVLAELAKNEEVVNWIVEGGAVPALVKHLQAPPTSEADRNLKPFEHEVEKGSAFALGLLAVKPEHQQLIVD 155 (717)
Q Consensus 76 ~~~~~~~a~~~L~~l~~~~~~~~~~~~~g~i~~L~~lL~~~~~~~~~~~~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~ 155 (717)
++.++..+...+++++-+.+++..+++.+++..|+.-+..+.. ++|..+..+++||+.-.+++..+..
T Consensus 98 d~~Iq~aa~~alGnlAVn~enk~liv~l~Gl~~Li~qmmtd~v------------evqcnaVgCitnLaT~d~nk~kiA~ 165 (550)
T KOG4224|consen 98 DKCIQCAAGEALGNLAVNMENKGLIVSLLGLDLLILQMMTDGV------------EVQCNAVGCITNLATFDSNKVKIAR 165 (550)
T ss_pred chhhhhhhhhhhccceeccCCceEEEeccChHHHHHHhcCCCc------------EEEeeehhhhhhhhccccchhhhhh
Confidence 6678889999999999988888888898999888877777766 8999999999999966888999999
Q ss_pred CCChHHHHHHHhccccCCCccchhHHHHHHHHHHHHHhhcCchhhhHHHhcCCcHHHHHhhcCCCHHHHHHHHHHHHHhh
Q 005044 156 NGALSHLVNLLKRHMDSNCSRAVNSVIRRAADAITNLAHENSSIKTRVRMEGGIPPLVELLEFTDTKVQRAAAGALRTLA 235 (717)
Q Consensus 156 ~~~i~~L~~lL~~~~~~~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~L~ 235 (717)
.|++.++.++-+..+. .+++.+..+|.|+.. ..++|+.++..|++|.|+.+++++++.++..++.++.+++
T Consensus 166 sGaL~pltrLakskdi--------rvqrnatgaLlnmTh-s~EnRr~LV~aG~lpvLVsll~s~d~dvqyycttaisnIa 236 (550)
T KOG4224|consen 166 SGALEPLTRLAKSKDI--------RVQRNATGALLNMTH-SRENRRVLVHAGGLPVLVSLLKSGDLDVQYYCTTAISNIA 236 (550)
T ss_pred ccchhhhHhhcccchh--------hHHHHHHHHHHHhhh-hhhhhhhhhccCCchhhhhhhccCChhHHHHHHHHhhhhh
Confidence 9999999996666555 899999999999998 7778889999999999999999999999999999999999
Q ss_pred ccChhhHHHHHhcC--CHHHHHHHHcCCCHHHHHHHHHHHHHhhcCChHHHHHHHHcCChHHHHHhhccCChHHHHHHHH
Q 005044 236 FKNDENKNQIVECN--ALPTLILMLRSEDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLSSCCSESQREAAL 313 (717)
Q Consensus 236 ~~~~~~~~~~~~~g--~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~l~~L~~ll~~~~~~~~~~a~~ 313 (717)
- +..+++.+++.+ +++.|++++.++++.++..|.-+|++++.. ...+..++++|.+|.++++++++..........
T Consensus 237 V-d~~~Rk~Laqaep~lv~~Lv~Lmd~~s~kvkcqA~lALrnlasd-t~Yq~eiv~ag~lP~lv~Llqs~~~plilasVa 314 (550)
T KOG4224|consen 237 V-DRRARKILAQAEPKLVPALVDLMDDGSDKVKCQAGLALRNLASD-TEYQREIVEAGSLPLLVELLQSPMGPLILASVA 314 (550)
T ss_pred h-hHHHHHHHHhcccchHHHHHHHHhCCChHHHHHHHHHHhhhccc-chhhhHHHhcCCchHHHHHHhCcchhHHHHHHH
Confidence 7 778888999887 999999999999999999999999999865 555688999999999999999988878788888
Q ss_pred HHHHHhcCChhhHHHHHhcCChHHHHHHhcCC-CHHHHHHHHHHHHHhhc-CCCCchhhHhcCChHHHHHhhcCCChhHH
Q 005044 314 LLGQFAATDSDCKVHIVQRGAVRPLIEMLQSP-DVQLREMSAFALGRLAQ-DMHNQAGIAHNGGLVPLLKLLDSKNGSLQ 391 (717)
Q Consensus 314 ~L~~l~~~~~~~~~~l~~~~~l~~L~~~l~~~-~~~v~~~a~~~L~~l~~-~~~~~~~l~~~~~l~~L~~ll~~~~~~v~ 391 (717)
++.|++ -.+-+...+.+.|++.+|+.+|.-. +.+++..|..+|+||+. +.+++..+.+.|+++.+..++.+++..++
T Consensus 315 CIrnis-ihplNe~lI~dagfl~pLVrlL~~~dnEeiqchAvstLrnLAasse~n~~~i~esgAi~kl~eL~lD~pvsvq 393 (550)
T KOG4224|consen 315 CIRNIS-IHPLNEVLIADAGFLRPLVRLLRAGDNEEIQCHAVSTLRNLAASSEHNVSVIRESGAIPKLIELLLDGPVSVQ 393 (550)
T ss_pred HHhhcc-cccCcccceecccchhHHHHHHhcCCchhhhhhHHHHHHHHhhhhhhhhHHHhhcCchHHHHHHHhcCChhHH
Confidence 999996 4467777789999999999999875 45599999999999998 66778899999999999999999999999
Q ss_pred HHHHHHHHhccCCCcchHHHHHhcCccccccchhHHhhhHHHHHHHHHHHHHHhhhchHHHHHHHHhhcchhHHHHHHHH
Q 005044 392 HNAAFALYGLADNEDNVADFIRVGGVQKLQDGEFIVQATKDCVAKTLKRLEEKIHGRVLNHLLYLMRVAEKGVQRRVALA 471 (717)
Q Consensus 392 ~~a~~~L~~l~~~~~~~~~l~~~~~i~~L~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~L~~ll~~~~~~v~~~a~~a 471 (717)
.....++..|+.++..+..+.+.|. ++.|+.+..+.+.+++.+++.+
T Consensus 394 seisac~a~Lal~d~~k~~lld~gi---------------------------------~~iLIp~t~s~s~Ev~gNaAaA 440 (550)
T KOG4224|consen 394 SEISACIAQLALNDNDKEALLDSGI---------------------------------IPILIPWTGSESEEVRGNAAAA 440 (550)
T ss_pred HHHHHHHHHHHhccccHHHHhhcCC---------------------------------cceeecccCccchhhcccHHHH
Confidence 9999999999999999999988884 5557888899999999999999
Q ss_pred HHhccCCCCCceeeec------CCCHHHHHHHhcCCCchhhhhhHHHHHHhhhc
Q 005044 472 LAHLCSPDDQRTIFID------GGGLELLLGLLGSTNPKQQLDGAVALFKLANK 519 (717)
Q Consensus 472 L~~l~~~~~~~~~~~~------~~~l~~L~~ll~~~~~~v~~~a~~~l~~L~~~ 519 (717)
|.|+++..++-..+.+ .|.-..|.+++.+....++..+.|.+.+|..+
T Consensus 441 L~Nlss~v~~YarviEawd~P~~gi~g~L~Rfl~S~~~tf~hia~wTI~qLle~ 494 (550)
T KOG4224|consen 441 LINLSSDVEHYARVIEAWDHPVQGIQGRLARFLASHELTFRHIARWTIQQLLED 494 (550)
T ss_pred HHhhhhhhHHHHHHHHHhcCcchhHHHHHHHHHhhhHHHHHHHHHHHHHHHHHh
Confidence 9999987653222222 34445788999998889999999999999986
No 9
>PHA02713 hypothetical protein; Provisional
Probab=99.94 E-value=6.8e-26 Score=243.90 Aligned_cols=159 Identities=18% Similarity=0.300 Sum_probs=148.4
Q ss_pred HHhhcCCCCccEEEEEc-CeEeehhHHHHhhccHHHHHhhcCCCCCCC-CcceEcCCCCHHHHHHHHHHHhcCccccchh
Q 005044 541 DQFVNNATLSDVTFLVE-GRRFYAHRICLLASSDAFRAMFDGGYREKD-ARDIEIPNIRWEVFELMMRFIYTGSVDVTLD 618 (717)
Q Consensus 541 ~~~~~~~~~~Dv~~~~~-~~~~~~h~~il~~~s~~f~~~~~~~~~e~~-~~~i~l~~~~~~~~~~~l~~~Yt~~~~~~~~ 618 (717)
++++..+.+|||++.++ ++.|++||.||+++|+||++||.++++|.. +..|+|.++++++|+.+|+|+|||. ++.+
T Consensus 17 ~~lr~~~~l~DV~L~v~~~~~f~~Hr~vLaa~S~YF~amF~~~~~e~~~~~~v~l~~v~~~~~~~ll~y~Yt~~--i~~~ 94 (557)
T PHA02713 17 SNLLDDDILCDVIITIGDGEEIKAHKTILAAGSKYFRTLFTTPMIIRDLVTRVNLQMFDKDAVKNIVQYLYNRH--ISSM 94 (557)
T ss_pred HHHHhCCCCCCEEEEeCCCCEEeehHHHHhhcCHHHHHHhcCCchhhccCceEEeccCCHHHHHHHHHHhcCCC--CCHH
Confidence 67899999999999998 899999999999999999999999999864 7899999999999999999999997 6899
Q ss_pred hHHHHHHHHHhhChHhHHHHHHHHHHhcCChhcHHHHHHHHHHcCcHHHHHHHHHHHHHhHHHhcCCchhhhchhhcHHH
Q 005044 619 IAQDLLRAADQYLLEGLKRLCEYTIAQDISLENVSSMYELSEAFHAISLRHTCILYIMEHFDKLSTRPGHSNLIQRIIPE 698 (717)
Q Consensus 619 ~~~~ll~~A~~~~~~~l~~~c~~~l~~~i~~~n~~~~~~~a~~~~~~~L~~~~~~~i~~~~~~~~~~~~f~~l~~~~~~~ 698 (717)
++.+++.+|++|+++.+++.|++||.++++++||+.++.++..+.+..|.+.|.+||.+||.++.++++|.+|+.+ .
T Consensus 95 nv~~ll~aA~~lqi~~l~~~C~~~l~~~l~~~NCl~i~~~~~~~~~~~L~~~a~~~i~~~f~~v~~~~ef~~L~~~---~ 171 (557)
T PHA02713 95 NVIDVLKCADYLLIDDLVTDCESYIKDYTNHDTCIYMYHRLYEMSHIPIVKYIKRMLMSNIPTLITTDAFKKTVFE---I 171 (557)
T ss_pred HHHHHHHHHHHHCHHHHHHHHHHHHHhhCCccchHHHHHHHHhccchHHHHHHHHHHHHHHHHHhCChhhhhCCHH---H
Confidence 9999999999999999999999999999999999999999999999899999999999999999999999999655 4
Q ss_pred HHHHHH
Q 005044 699 IHNYFA 704 (717)
Q Consensus 699 l~~~l~ 704 (717)
+.++|+
T Consensus 172 l~~lL~ 177 (557)
T PHA02713 172 LFDIIS 177 (557)
T ss_pred HHHHhc
Confidence 444444
No 10
>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]
Probab=99.93 E-value=2.3e-25 Score=238.19 Aligned_cols=162 Identities=28% Similarity=0.457 Sum_probs=155.1
Q ss_pred HHhhcCCCCccEEEEEcCeEeehhHHHHhhccHHHHHhhcCCCCCCCCcceEcCCCCHHHHHHHHHHHhcCccccchhhH
Q 005044 541 DQFVNNATLSDVTFLVEGRRFYAHRICLLASSDAFRAMFDGGYREKDARDIEIPNIRWEVFELMMRFIYTGSVDVTLDIA 620 (717)
Q Consensus 541 ~~~~~~~~~~Dv~~~~~~~~~~~h~~il~~~s~~f~~~~~~~~~e~~~~~i~l~~~~~~~~~~~l~~~Yt~~~~~~~~~~ 620 (717)
+.++..+.+|||++.+++..|++||.||++.|+||++||.++++|+.+.+|++.++++++++.+++|+||+.+.++.+++
T Consensus 28 ~~lr~~~~lcDv~L~v~~~~~~aHR~VLAa~S~YFraMFt~~l~e~~~~~i~l~~v~~~~l~~ll~y~Yt~~i~i~~~nV 107 (571)
T KOG4441|consen 28 NELREEGLLCDVTLLVGDREFPAHRVVLAACSPYFRAMFTSGLKESKQKEINLEGVDPETLELLLDYAYTGKLEISEDNV 107 (571)
T ss_pred HHHHHhCCCceEEEEECCeeechHHHHHHhccHHHHHHhcCCcccccceEEEEecCCHHHHHHHHHHhhcceEEechHhH
Confidence 78899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhhChHhHHHHHHHHHHhcCChhcHHHHHHHHHHcCcHHHHHHHHHHHHHhHHHhcCCchhhhchhhcHHHHH
Q 005044 621 QDLLRAADQYLLEGLKRLCEYTIAQDISLENVSSMYELSEAFHAISLRHTCILYIMEHFDKLSTRPGHSNLIQRIIPEIH 700 (717)
Q Consensus 621 ~~ll~~A~~~~~~~l~~~c~~~l~~~i~~~n~~~~~~~a~~~~~~~L~~~~~~~i~~~~~~~~~~~~f~~l~~~~~~~l~ 700 (717)
.+++.+|++||++.+.+.|.+||..+++++||+.++.+|+.|++.+|.+.+..|+.+||.++.++++|..|+.+ ++.
T Consensus 108 q~ll~aA~~lQi~~v~~~C~~fL~~~l~~~Nclgi~~~a~~~~~~~L~~~a~~~i~~~F~~v~~~eefl~L~~~---~l~ 184 (571)
T KOG4441|consen 108 QELLEAASLLQIPEVVDACCEFLESQLDPSNCLGIRRFAELHSCTELLEVADEYILQHFAEVSKTEEFLLLSLE---ELI 184 (571)
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHhccHHhhCCCHH---HHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999655 444
Q ss_pred HHHHh
Q 005044 701 NYFAK 705 (717)
Q Consensus 701 ~~l~~ 705 (717)
.++++
T Consensus 185 ~ll~~ 189 (571)
T KOG4441|consen 185 GLLSS 189 (571)
T ss_pred hhccc
Confidence 44444
No 11
>PF05804 KAP: Kinesin-associated protein (KAP)
Probab=99.92 E-value=2.6e-22 Score=214.14 Aligned_cols=378 Identities=19% Similarity=0.224 Sum_probs=314.7
Q ss_pred HHHHHHHHHHHhhcChhhHHHHHhCCChHHHHHhhcCCCCCccccCCCccchHHHhHHHHHHHHhcCChhhHHHHHhCCC
Q 005044 79 AAKRATHVLAELAKNEEVVNWIVEGGAVPALVKHLQAPPTSEADRNLKPFEHEVEKGSAFALGLLAVKPEHQQLIVDNGA 158 (717)
Q Consensus 79 ~~~~a~~~L~~l~~~~~~~~~~~~~g~i~~L~~lL~~~~~~~~~~~~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~ 158 (717)
..+.++..|.|++.++.....+.+.|+++.|+++|+..+. ++...++.+|.+|+-..+++..+.+.|+
T Consensus 265 Llrv~~~lLlNLAed~~ve~kM~~~~iV~~Lv~~Ldr~n~------------ellil~v~fLkkLSi~~ENK~~m~~~gi 332 (708)
T PF05804_consen 265 LLRVAFYLLLNLAEDPRVELKMVNKGIVSLLVKCLDRENE------------ELLILAVTFLKKLSIFKENKDEMAESGI 332 (708)
T ss_pred HHHHHHHHHHHHhcChHHHHHHHhcCCHHHHHHHHcCCCH------------HHHHHHHHHHHHHcCCHHHHHHHHHcCC
Confidence 4678888999999999999999999999999999998876 9999999999999988889999999999
Q ss_pred hHHHHHHHhccccCCCccchhHHHHHHHHHHHHHhhcCchhhhHHHhcCCcHHHHHhhcCCCHHHHHHHHHHHHHhhccC
Q 005044 159 LSHLVNLLKRHMDSNCSRAVNSVIRRAADAITNLAHENSSIKTRVRMEGGIPPLVELLEFTDTKVQRAAAGALRTLAFKN 238 (717)
Q Consensus 159 i~~L~~lL~~~~~~~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~L~~~~ 238 (717)
++.|.+++...+. +++..++++|.||+. ++..|..++..|++|.|+.++.++ ..+..++.+|.+++. +
T Consensus 333 V~kL~kLl~s~~~--------~l~~~aLrlL~NLSf-d~~~R~~mV~~GlIPkLv~LL~d~--~~~~val~iLy~LS~-d 400 (708)
T PF05804_consen 333 VEKLLKLLPSENE--------DLVNVALRLLFNLSF-DPELRSQMVSLGLIPKLVELLKDP--NFREVALKILYNLSM-D 400 (708)
T ss_pred HHHHHHHhcCCCH--------HHHHHHHHHHHHhCc-CHHHHHHHHHCCCcHHHHHHhCCC--chHHHHHHHHHHhcc-C
Confidence 9999999988765 899999999999999 777899999999999999999765 455679999999997 7
Q ss_pred hhhHHHHHhcCCHHHHHHHHc-CCCHHHHHHHHHHHHHhhcCChHHHHHHHHcCChHHHHHhhccCChHHHHHHHHHHHH
Q 005044 239 DENKNQIVECNALPTLILMLR-SEDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLSSCCSESQREAALLLGQ 317 (717)
Q Consensus 239 ~~~~~~~~~~g~i~~L~~ll~-~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~l~~L~~ll~~~~~~~~~~a~~~L~~ 317 (717)
++.+..+...+++|.+++++- .+++.+...+++.+.|++.. +.+.+.+.+.++++.|+......... .....+.|
T Consensus 401 d~~r~~f~~TdcIp~L~~~Ll~~~~~~v~~eliaL~iNLa~~-~rnaqlm~~g~gL~~L~~ra~~~~D~---lLlKlIRN 476 (708)
T PF05804_consen 401 DEARSMFAYTDCIPQLMQMLLENSEEEVQLELIALLINLALN-KRNAQLMCEGNGLQSLMKRALKTRDP---LLLKLIRN 476 (708)
T ss_pred HhhHHHHhhcchHHHHHHHHHhCCCccccHHHHHHHHHHhcC-HHHHHHHHhcCcHHHHHHHHHhcccH---HHHHHHHH
Confidence 788999999999999999764 46777888899999999865 55668888889999999877554332 23469999
Q ss_pred HhcCChhhHHHHHhcCChHHHHHHhcC-CCHHHHHHHHHHHHHhhcCCCCchhhHh-cCChHHHHHhhcCC--ChhHHHH
Q 005044 318 FAATDSDCKVHIVQRGAVRPLIEMLQS-PDVQLREMSAFALGRLAQDMHNQAGIAH-NGGLVPLLKLLDSK--NGSLQHN 393 (717)
Q Consensus 318 l~~~~~~~~~~l~~~~~l~~L~~~l~~-~~~~v~~~a~~~L~~l~~~~~~~~~l~~-~~~l~~L~~ll~~~--~~~v~~~ 393 (717)
++.+++..+..+. +.+..|+..+.. .+.+...+++++|+||...+..-..+++ .+.++.+.++|..+ +.++...
T Consensus 477 iS~h~~~~k~~f~--~~i~~L~~~v~~~~~ee~~vE~LGiLaNL~~~~ld~~~ll~~~~llp~L~~~L~~g~~~dDl~LE 554 (708)
T PF05804_consen 477 ISQHDGPLKELFV--DFIGDLAKIVSSGDSEEFVVECLGILANLTIPDLDWAQLLQEYNLLPWLKDLLKPGASEDDLLLE 554 (708)
T ss_pred HHhcCchHHHHHH--HHHHHHHHHhhcCCcHHHHHHHHHHHHhcccCCcCHHHHHHhCCHHHHHHHHhCCCCCChHHHHH
Confidence 9887755555443 477778888866 4778888999999999976555555554 58899999999654 4578888
Q ss_pred HHHHHHhccCCCcchHHHHHhcCccccccchhHHhhhHHHHHHHHHHHHHHhhhchHHHHHHHHhhc--chhHHHHHHHH
Q 005044 394 AAFALYGLADNEDNVADFIRVGGVQKLQDGEFIVQATKDCVAKTLKRLEEKIHGRVLNHLLYLMRVA--EKGVQRRVALA 471 (717)
Q Consensus 394 a~~~L~~l~~~~~~~~~l~~~~~i~~L~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~L~~ll~~~--~~~v~~~a~~a 471 (717)
++..++.++..+.....+.+.| +++.|+.+|... +.++....+.+
T Consensus 555 ~Vi~~gtla~d~~~A~lL~~sg---------------------------------li~~Li~LL~~kqeDdE~VlQil~~ 601 (708)
T PF05804_consen 555 VVILLGTLASDPECAPLLAKSG---------------------------------LIPTLIELLNAKQEDDEIVLQILYV 601 (708)
T ss_pred HHHHHHHHHCCHHHHHHHHhCC---------------------------------hHHHHHHHHHhhCchHHHHHHHHHH
Confidence 8899999998777766666655 677789998775 68999999999
Q ss_pred HHhccCCCCCceeeec-CCCHHHHHHHhcCCCchhhhhhHHHHHHhhhc
Q 005044 472 LAHLCSPDDQRTIFID-GGGLELLLGLLGSTNPKQQLDGAVALFKLANK 519 (717)
Q Consensus 472 L~~l~~~~~~~~~~~~-~~~l~~L~~ll~~~~~~v~~~a~~~l~~L~~~ 519 (717)
+.++..+++.+..++. .++...|+.++.++|+.++..|-.+|-=++..
T Consensus 602 f~~ll~h~~tr~~ll~~~~~~~ylidL~~d~N~~ir~~~d~~Ldii~e~ 650 (708)
T PF05804_consen 602 FYQLLFHEETREVLLKETEIPAYLIDLMHDKNAEIRKVCDNALDIIAEY 650 (708)
T ss_pred HHHHHcChHHHHHHHhccchHHHHHHHhcCCCHHHHHHHHHHHHHHHHh
Confidence 9999999887666544 56778899999999999999988888777654
No 12
>PHA02790 Kelch-like protein; Provisional
Probab=99.92 E-value=3.4e-25 Score=235.37 Aligned_cols=149 Identities=17% Similarity=0.194 Sum_probs=137.8
Q ss_pred HhhcCCCCccEEEEEcCeEeehhHHHHhhccHHHHHhhcCCCCCCCCcceEc--CCCCHHHHHHHHHHHhcCccccchhh
Q 005044 542 QFVNNATLSDVTFLVEGRRFYAHRICLLASSDAFRAMFDGGYREKDARDIEI--PNIRWEVFELMMRFIYTGSVDVTLDI 619 (717)
Q Consensus 542 ~~~~~~~~~Dv~~~~~~~~~~~h~~il~~~s~~f~~~~~~~~~e~~~~~i~l--~~~~~~~~~~~l~~~Yt~~~~~~~~~ 619 (717)
.++-.+.+|||++. .|+.|++||.||++.|+||++||.+++.|+.+ .|.+ .++++++++.+|+|+|||++.++.+|
T Consensus 15 ~~~~~~~~~~~~~~-~~~~~~~HR~VLAa~S~YFraMF~~~~~Es~~-~v~~~~~~v~~~~l~~lldy~YTg~l~it~~n 92 (480)
T PHA02790 15 ALSMTKKFKTIIEA-IGGNIIVNSTILKKLSPYFRTHLRQKYTKNKD-PVTRVCLDLDIHSLTSIVIYSYTGKVYIDSHN 92 (480)
T ss_pred HHHhhhhhceEEEE-cCcEEeeehhhhhhcCHHHHHHhcCCcccccc-ceEEEecCcCHHHHHHHHHhheeeeEEEeccc
Confidence 34556788999764 55699999999999999999999999999865 4554 48999999999999999999999999
Q ss_pred HHHHHHHHHhhChHhHHHHHHHHHHhcCChhcHHHHHHHHHHcCcHHHHHHHHHHHHHhHHHhcCC--chhhhch
Q 005044 620 AQDLLRAADQYLLEGLKRLCEYTIAQDISLENVSSMYELSEAFHAISLRHTCILYIMEHFDKLSTR--PGHSNLI 692 (717)
Q Consensus 620 ~~~ll~~A~~~~~~~l~~~c~~~l~~~i~~~n~~~~~~~a~~~~~~~L~~~~~~~i~~~~~~~~~~--~~f~~l~ 692 (717)
+.+++.+|++|+++.+++.|++||.++++++||+.++.+|+.|++.+|.+.+.+||.+||.++.++ ++|..|+
T Consensus 93 V~~ll~aA~~Lqi~~v~~~C~~fL~~~l~~~NCl~i~~~A~~y~~~~L~~~a~~fi~~nF~~v~~~~~~ef~~L~ 167 (480)
T PHA02790 93 VVNLLRASILTSVEFIIYTCINFILRDFRKEYCVECYMMGIEYGLSNLLCHTKDFIAKHFLELEDDIIDNFDYLS 167 (480)
T ss_pred HHHHHHHHHHhChHHHHHHHHHHHHhhCCcchHHHHHHHHHHhCHHHHHHHHHHHHHHhHHHHhcccchhhhhCC
Confidence 999999999999999999999999999999999999999999999999999999999999999986 8998885
No 13
>PHA03098 kelch-like protein; Provisional
Probab=99.92 E-value=1.7e-24 Score=236.31 Aligned_cols=150 Identities=23% Similarity=0.424 Sum_probs=143.6
Q ss_pred CCCCccEEEEE--cCeEeehhHHHHhhccHHHHHhhcCCCCCCCCcceEcCCCCHHHHHHHHHHHhcCccccchhhHHHH
Q 005044 546 NATLSDVTFLV--EGRRFYAHRICLLASSDAFRAMFDGGYREKDARDIEIPNIRWEVFELMMRFIYTGSVDVTLDIAQDL 623 (717)
Q Consensus 546 ~~~~~Dv~~~~--~~~~~~~h~~il~~~s~~f~~~~~~~~~e~~~~~i~l~~~~~~~~~~~l~~~Yt~~~~~~~~~~~~l 623 (717)
++.+|||.+.+ +|+.|++||.||+++|+||++||.++|+ +..|.+++ ++++|+.+|+|+|||++.++.+++.++
T Consensus 6 ~~~~~Dv~l~~~~~~~~~~~Hk~vLaa~S~yF~~mf~~~~~---~~~i~l~~-~~~~~~~~l~y~Ytg~~~i~~~~~~~l 81 (534)
T PHA03098 6 LQKFCDESIIIVNGGGIIKVHKIILSSSSEYFKKMFKNNFK---ENEINLNI-DYDSFNEVIKYIYTGKINITSNNVKDI 81 (534)
T ss_pred cCCCCCEEEEEEcCCEEEEeHHHHHHhhhHHHHHHHhCCCC---CceEEecC-CHHHHHHHHHHhcCCceEEcHHHHHHH
Confidence 78899999998 9999999999999999999999999988 56899999 999999999999999999999999999
Q ss_pred HHHHHhhChHhHHHHHHHHHHhcCChhcHHHHHHHHHHcCcHHHHHHHHHHHHHhHHHhcCCchhhhchhhcHHHH
Q 005044 624 LRAADQYLLEGLKRLCEYTIAQDISLENVSSMYELSEAFHAISLRHTCILYIMEHFDKLSTRPGHSNLIQRIIPEI 699 (717)
Q Consensus 624 l~~A~~~~~~~l~~~c~~~l~~~i~~~n~~~~~~~a~~~~~~~L~~~~~~~i~~~~~~~~~~~~f~~l~~~~~~~l 699 (717)
+.+|++|+++.|+..|+++|.+.++.+||+.++.+|+.|++..|++.|.+||.+||.++.++++|.+|+.+.+.++
T Consensus 82 l~~A~~l~~~~l~~~C~~~l~~~l~~~nc~~~~~~a~~~~~~~L~~~~~~~i~~nf~~v~~~~~f~~l~~~~l~~l 157 (534)
T PHA03098 82 LSIANYLIIDFLINLCINYIIKIIDDNNCIDIYRFSFFYGCKKLYSAAYNYIRNNIELIYNDPDFIYLSKNELIKI 157 (534)
T ss_pred HHHHHHhCcHHHHHHHHHHHHHhCCHhHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHhcCchhhcCCHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999999999999999987766554
No 14
>PF05804 KAP: Kinesin-associated protein (KAP)
Probab=99.90 E-value=1.9e-21 Score=207.54 Aligned_cols=370 Identities=21% Similarity=0.239 Sum_probs=302.3
Q ss_pred CchHHHHHHHHHHHHhhhhhccccchHHHHHHHHHHHHHHHHhhcChhhHHHHHhCCChHHHHHhhcCCCCCccccCCCc
Q 005044 48 SSDARQALLSEVSAQVNVLNTTFSWLEADRAAAKRATHVLAELAKNEEVVNWIVEGGAVPALVKHLQAPPTSEADRNLKP 127 (717)
Q Consensus 48 ~~~~~~~~~~~i~~l~~~L~~~~~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~g~i~~L~~lL~~~~~~~~~~~~~~ 127 (717)
+.+..-.....-..++..|.+.++.. +......++..|..++-..+++..|.+.|+++.|++++.+.+.
T Consensus 277 Aed~~ve~kM~~~~iV~~Lv~~Ldr~--n~ellil~v~fLkkLSi~~ENK~~m~~~giV~kL~kLl~s~~~--------- 345 (708)
T PF05804_consen 277 AEDPRVELKMVNKGIVSLLVKCLDRE--NEELLILAVTFLKKLSIFKENKDEMAESGIVEKLLKLLPSENE--------- 345 (708)
T ss_pred hcChHHHHHHHhcCCHHHHHHHHcCC--CHHHHHHHHHHHHHHcCCHHHHHHHHHcCCHHHHHHHhcCCCH---------
Confidence 33333444444455566666655554 3446888999999999999999999999999999999998776
Q ss_pred cchHHHhHHHHHHHHhcCChhhHHHHHhCCChHHHHHHHhccccCCCccchhHHHHHHHHHHHHHhhcCchhhhHHHhcC
Q 005044 128 FEHEVEKGSAFALGLLAVKPEHQQLIVDNGALSHLVNLLKRHMDSNCSRAVNSVIRRAADAITNLAHENSSIKTRVRMEG 207 (717)
Q Consensus 128 ~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~i~~L~~lL~~~~~~~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~ 207 (717)
+++..++++|.||+.+++.|..++..|++|.|+.+|.+. ..+..++.+|.+++. ++..+..+...+
T Consensus 346 ---~l~~~aLrlL~NLSfd~~~R~~mV~~GlIPkLv~LL~d~----------~~~~val~iLy~LS~-dd~~r~~f~~Td 411 (708)
T PF05804_consen 346 ---DLVNVALRLLFNLSFDPELRSQMVSLGLIPKLVELLKDP----------NFREVALKILYNLSM-DDEARSMFAYTD 411 (708)
T ss_pred ---HHHHHHHHHHHHhCcCHHHHHHHHHCCCcHHHHHHhCCC----------chHHHHHHHHHHhcc-CHhhHHHHhhcc
Confidence 899999999999999999999999999999999999854 456779999999999 667888999999
Q ss_pred CcHHHHHhhc-CCCHHHHHHHHHHHHHhhccChhhHHHHHhcCCHHHHHHHHcCCCHHHHHHHHHHHHHhhcCChHHHHH
Q 005044 208 GIPPLVELLE-FTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSEDSAIHYEAVGVIGNLVHSSPNIKKE 286 (717)
Q Consensus 208 ~i~~L~~ll~-~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~ 286 (717)
++|.+++++- .+++.+...++..+.||+. ++.+.+.+++.|+++.|++..-.....+ .+..+.|++.++...+..
T Consensus 412 cIp~L~~~Ll~~~~~~v~~eliaL~iNLa~-~~rnaqlm~~g~gL~~L~~ra~~~~D~l---LlKlIRNiS~h~~~~k~~ 487 (708)
T PF05804_consen 412 CIPQLMQMLLENSEEEVQLELIALLINLAL-NKRNAQLMCEGNGLQSLMKRALKTRDPL---LLKLIRNISQHDGPLKEL 487 (708)
T ss_pred hHHHHHHHHHhCCCccccHHHHHHHHHHhc-CHHHHHHHHhcCcHHHHHHHHHhcccHH---HHHHHHHHHhcCchHHHH
Confidence 9999999764 4667788888999999997 7888899999999999998664433322 446899998876554444
Q ss_pred HHHcCChHHHHHhhccC-ChHHHHHHHHHHHHHhcCChhhHHHHHhcCChHHHHHHhcCC--CHHHHHHHHHHHHHhhcC
Q 005044 287 VLAAGALQPVIGLLSSC-CSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQSP--DVQLREMSAFALGRLAQD 363 (717)
Q Consensus 287 ~~~~g~l~~L~~ll~~~-~~~~~~~a~~~L~~l~~~~~~~~~~l~~~~~l~~L~~~l~~~--~~~v~~~a~~~L~~l~~~ 363 (717)
+. +.+..|+.++..+ +++...++.++|+|+...+.+....+.+.+++|.|.+.|..+ ++++..+++-.++.++.+
T Consensus 488 f~--~~i~~L~~~v~~~~~ee~~vE~LGiLaNL~~~~ld~~~ll~~~~llp~L~~~L~~g~~~dDl~LE~Vi~~gtla~d 565 (708)
T PF05804_consen 488 FV--DFIGDLAKIVSSGDSEEFVVECLGILANLTIPDLDWAQLLQEYNLLPWLKDLLKPGASEDDLLLEVVILLGTLASD 565 (708)
T ss_pred HH--HHHHHHHHHhhcCCcHHHHHHHHHHHHhcccCCcCHHHHHHhCCHHHHHHHHhCCCCCChHHHHHHHHHHHHHHCC
Confidence 33 4677777777664 578899999999999866666666677789999999999763 567888999999999998
Q ss_pred CCCchhhHhcCChHHHHHhhcC--CChhHHHHHHHHHHhccCCCcchHHHHHhcCccccccchhHHhhhHHHHHHHHHHH
Q 005044 364 MHNQAGIAHNGGLVPLLKLLDS--KNGSLQHNAAFALYGLADNEDNVADFIRVGGVQKLQDGEFIVQATKDCVAKTLKRL 441 (717)
Q Consensus 364 ~~~~~~l~~~~~l~~L~~ll~~--~~~~v~~~a~~~L~~l~~~~~~~~~l~~~~~i~~L~~~~~~~~~~~~~~~~~~~~l 441 (717)
+.....+.+.|.++.|+.++.+ .|.++..+.++++..+..+++.+..+.+.
T Consensus 566 ~~~A~lL~~sgli~~Li~LL~~kqeDdE~VlQil~~f~~ll~h~~tr~~ll~~--------------------------- 618 (708)
T PF05804_consen 566 PECAPLLAKSGLIPTLIELLNAKQEDDEIVLQILYVFYQLLFHEETREVLLKE--------------------------- 618 (708)
T ss_pred HHHHHHHHhCChHHHHHHHHHhhCchHHHHHHHHHHHHHHHcChHHHHHHHhc---------------------------
Confidence 8888889999999999999965 46888999999999999888888777653
Q ss_pred HHHhhhchHHHHHHHHhhcchhHHHHHHHHHHhccCCCC
Q 005044 442 EEKIHGRVLNHLLYLMRVAEKGVQRRVALALAHLCSPDD 480 (717)
Q Consensus 442 ~~~~~~~~~~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~ 480 (717)
.++...|+.++++.++++|..|-.+|.-++..+.
T Consensus 619 -----~~~~~ylidL~~d~N~~ir~~~d~~Ldii~e~d~ 652 (708)
T PF05804_consen 619 -----TEIPAYLIDLMHDKNAEIRKVCDNALDIIAEYDE 652 (708)
T ss_pred -----cchHHHHHHHhcCCCHHHHHHHHHHHHHHHHhCH
Confidence 2367789999999999999999999998876654
No 15
>KOG4350 consensus Uncharacterized conserved protein, contains BTB/POZ domain [General function prediction only]
Probab=99.90 E-value=5e-24 Score=200.77 Aligned_cols=161 Identities=30% Similarity=0.502 Sum_probs=152.9
Q ss_pred HHhhcCCCCccEEEEEcCeEeehhHHHHhhccHHHHHhhcCCCCCCCCcceEcCCCCHHHHHHHHHHHhcCcccc---ch
Q 005044 541 DQFVNNATLSDVTFLVEGRRFYAHRICLLASSDAFRAMFDGGYREKDARDIEIPNIRWEVFELMMRFIYTGSVDV---TL 617 (717)
Q Consensus 541 ~~~~~~~~~~Dv~~~~~~~~~~~h~~il~~~s~~f~~~~~~~~~e~~~~~i~l~~~~~~~~~~~l~~~Yt~~~~~---~~ 617 (717)
..++.+..++||+++++++.|++||.||++||.||++|+.|+|.|+++..|++.+.+.++|+.+|+|||||++.+ ..
T Consensus 36 ~~l~~~e~y~DVtfvve~~rfpAHRvILAaRs~yFRAlLYgGm~Es~q~~ipLq~t~~eAF~~lLrYiYtg~~~l~~~~e 115 (620)
T KOG4350|consen 36 DELFTSEDYSDVTFVVEDTRFPAHRVILAARSSYFRALLYGGMQESHQQLIPLQETNSEAFRALLRYIYTGKIDLAGVEE 115 (620)
T ss_pred HHHhhcCcccceEEEEeccccchhhhhHHHHHHHHHHHHhhhhhhhhhcccccccccHHHHHHHHHHHhhcceecccchH
Confidence 456678889999999999999999999999999999999999999999999999999999999999999999975 46
Q ss_pred hhHHHHHHHHHhhChHhHHHHHHHHHHhcCChhcHHHHHHHHHHcCcHHHHHHHHHHHHHhHHHhcCCchhhhchhhcHH
Q 005044 618 DIAQDLLRAADQYLLEGLKRLCEYTIAQDISLENVSSMYELSEAFHAISLRHTCILYIMEHFDKLSTRPGHSNLIQRIIP 697 (717)
Q Consensus 618 ~~~~~ll~~A~~~~~~~l~~~c~~~l~~~i~~~n~~~~~~~a~~~~~~~L~~~~~~~i~~~~~~~~~~~~f~~l~~~~~~ 697 (717)
+...+.+.+|++|+++.|.....+++.+.+..+|++.++..|..|+.++|.+.|+.|+.+|..+++..+.|..|+++.+.
T Consensus 116 d~lld~LslAh~Ygf~~Le~aiSeYl~~iL~~~NvCmifdaA~ly~l~~Lt~~C~mfmDrnA~~lL~~~sFn~LSk~sL~ 195 (620)
T KOG4350|consen 116 DILLDYLSLAHRYGFIQLETAISEYLKEILKNENVCMIFDAAYLYQLTDLTDYCMMFMDRNADQLLEDPSFNRLSKDSLK 195 (620)
T ss_pred HHHHHHHHHHHhcCcHHHHHHHHHHHHHHHcccceeeeeeHHHHhcchHHHHHHHHHHhcCHHhhhcCcchhhhhHHHHH
Confidence 67889999999999999999999999999999999999999999999999999999999999999999999999999888
Q ss_pred HHHH
Q 005044 698 EIHN 701 (717)
Q Consensus 698 ~l~~ 701 (717)
+++.
T Consensus 196 e~l~ 199 (620)
T KOG4350|consen 196 ELLA 199 (620)
T ss_pred HHHh
Confidence 8763
No 16
>KOG4199 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.90 E-value=7.9e-21 Score=175.93 Aligned_cols=402 Identities=16% Similarity=0.169 Sum_probs=306.8
Q ss_pred ccccchhcccchhhhccchhhhhhhhhhhccccCCCCCchHHHHHHHHHHHHhhhhhccccchHHHHHHHHHHHHHHHHh
Q 005044 11 VPERKGQKRKLDEETVIGDEQQQMQQREISSSSAGTSSSDARQALLSEVSAQVNVLNTTFSWLEADRAAAKRATHVLAEL 90 (717)
Q Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~L~~~~~~~~~~~~~~~~a~~~L~~l 90 (717)
++.++++.+..++.+++|++++......+...+.. ++.... ++...+..+...+... ..+....|.++
T Consensus 19 ~ef~m~peea~~e~I~qfe~qgi~l~nIik~~sv~--~~~~qp----~i~~~~~~i~e~i~~~------~~E~s~ll~~l 86 (461)
T KOG4199|consen 19 VEFSMTPSEAKEETIKQFEAQGINLANIIKDLSVN--PQTGQP----VINETVDKIKEHIGQK------LEETTELLEQL 86 (461)
T ss_pred HHHhcCccccchHHHHHHHhccCcccccccccCCC--CCCCCc----cHHHhHHHHHHHHHhh------hHHHHHHHHHH
Confidence 45578888888999999999998888877765421 111111 1333333333332211 22223333333
Q ss_pred ---hc-ChhhHHHHHhCCChHHHHHhhcCCCCCccccCCCccchHHHhHHHHHHHHhc-CChhhHHHHHhCCChHHHHHH
Q 005044 91 ---AK-NEEVVNWIVEGGAVPALVKHLQAPPTSEADRNLKPFEHEVEKGSAFALGLLA-VKPEHQQLIVDNGALSHLVNL 165 (717)
Q Consensus 91 ---~~-~~~~~~~~~~~g~i~~L~~lL~~~~~~~~~~~~~~~~~~v~~~a~~~L~~l~-~~~~~~~~~~~~~~i~~L~~l 165 (717)
++ +...+....+.|..+.++.++.....+ +..+..+++.+|..+. ..|+. .+..++..++.+
T Consensus 87 ~d~ck~~~A~r~la~~~ga~~~~it~~~la~~~---------~~~~l~ksL~al~~lt~~qpdl----~da~g~~vvv~l 153 (461)
T KOG4199|consen 87 ADECKKSLAHRVLAGKNGAHDALITLLELAESP---------NESVLKKSLEAINSLTHKQPDL----FDAEAMAVVLKL 153 (461)
T ss_pred HHHHhhhHHHHHHhccCCCcchhhhHHHHhhCC---------chhHHHHHHHHHHHhhcCCcch----hccccHHHHHHH
Confidence 33 455566666789999888877643221 2267788999998888 66664 577889999999
Q ss_pred HhccccCCCccchhHHHHHHHHHHHHHhhcCchhhhHHHhcCCcHHHHHhhcC-CCHHHHHHHHHHHHHhhccCh-----
Q 005044 166 LKRHMDSNCSRAVNSVIRRAADAITNLAHENSSIKTRVRMEGGIPPLVELLEF-TDTKVQRAAAGALRTLAFKND----- 239 (717)
Q Consensus 166 L~~~~~~~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~-~~~~v~~~a~~~L~~L~~~~~----- 239 (717)
|....++. ++....+.++..-|..++.+|+.+++.++.+.+.+.+.. +..++.+..+++++.|..+++
T Consensus 154 L~~~~~~~------dlt~~~~~~v~~Ac~~hE~nrQ~~m~~~il~Li~~~l~~~gk~~~VRel~~a~r~l~~dDDiRV~f 227 (461)
T KOG4199|consen 154 LALKVESE------EVTLLTLQWLQKACIMHEVNRQLFMELKILELILQVLNREGKTRTVRELYDAIRALLTDDDIRVVF 227 (461)
T ss_pred HhcccchH------HHHHHHHHHHHHHHHHhHHHHHHHHHhhHHHHHHHHHcccCccHHHHHHHHHHHHhcCCCceeeec
Confidence 98765543 888899999999999999999999999999999976654 445788999999999997544
Q ss_pred ----hhHHHHHhcCCHHHHHHHHcCC-CHHHHHHHHHHHHHhhcCChHHHHHHHHcCChHHHHHhhccCCh----HHHHH
Q 005044 240 ----ENKNQIVECNALPTLILMLRSE-DSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLSSCCS----ESQRE 310 (717)
Q Consensus 240 ----~~~~~~~~~g~i~~L~~ll~~~-~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~l~~L~~ll~~~~~----~~~~~ 310 (717)
.+.+.++..|++..|++.++.. +|++...++.+|..++.. .+.++.+.+.|+++.++.++.+++. ...+.
T Consensus 228 g~ah~hAr~ia~e~~l~~L~Eal~A~~dp~~L~~l~~tl~~lAVr-~E~C~~I~e~GGl~tl~~~i~d~n~~~~r~l~k~ 306 (461)
T KOG4199|consen 228 GQAHGHARTIAKEGILTALTEALQAGIDPDSLVSLSTTLKALAVR-DEICKSIAESGGLDTLLRCIDDSNEQGNRTLAKT 306 (461)
T ss_pred chhhHHHHHHHHhhhHHHHHHHHHccCCccHHHHHHHHHHHHHHH-HHHHHHHHHccCHHHHHHHHhhhchhhHHHHHHH
Confidence 5577788899999999999853 688999999999999876 4566999999999999999988542 35578
Q ss_pred HHHHHHHHhcCChhhHHHHHhcCChHHHHHHhc--CCCHHHHHHHHHHHHHhhc-CCCCchhhHhcCChHHHHHhhcC--
Q 005044 311 AALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQ--SPDVQLREMSAFALGRLAQ-DMHNQAGIAHNGGLVPLLKLLDS-- 385 (717)
Q Consensus 311 a~~~L~~l~~~~~~~~~~l~~~~~l~~L~~~l~--~~~~~v~~~a~~~L~~l~~-~~~~~~~l~~~~~l~~L~~ll~~-- 385 (717)
++..|..++ +++.++..+++.|+.+.++.++. ..+|.+..+++.+++-||- .+++...+++.|+-...++.++.
T Consensus 307 ~lslLralA-G~DsvKs~IV~~gg~~~ii~l~~~h~~~p~Vi~~~~a~i~~l~LR~pdhsa~~ie~G~a~~avqAmkahP 385 (461)
T KOG4199|consen 307 CLSLLRALA-GSDSVKSTIVEKGGLDKIITLALRHSDDPLVIQEVMAIISILCLRSPDHSAKAIEAGAADLAVQAMKAHP 385 (461)
T ss_pred HHHHHHHHh-CCCchHHHHHHhcChHHHHHHHHHcCCChHHHHHHHHHHHHHHhcCcchHHHHHhcchHHHHHHHHHhCc
Confidence 889999997 66788899999999999999984 3789999999999999994 67778889999999999998854
Q ss_pred CChhHHHHHHHHHHhc-cCCCcchHHHHHhcCccccccchhHHhhhHHHHHHHHHHHHHHhhhchHHHHHHHHhhcchhH
Q 005044 386 KNGSLQHNAAFALYGL-ADNEDNVADFIRVGGVQKLQDGEFIVQATKDCVAKTLKRLEEKIHGRVLNHLLYLMRVAEKGV 464 (717)
Q Consensus 386 ~~~~v~~~a~~~L~~l-~~~~~~~~~l~~~~~i~~L~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~L~~ll~~~~~~v 464 (717)
....+++++|+.++|+ +++.+++..+...| ++.|+..-+..++..
T Consensus 386 ~~a~vQrnac~~IRNiv~rs~~~~~~~l~~G----------------------------------iE~Li~~A~~~h~tc 431 (461)
T KOG4199|consen 386 VAAQVQRNACNMIRNIVVRSAENRTILLANG----------------------------------IEKLIRTAKANHETC 431 (461)
T ss_pred HHHHHHHHHHHHHHHHHHhhhhccchHHhcc----------------------------------HHHHHHHHHhcCccH
Confidence 4567999999999999 56777877777765 555777778888888
Q ss_pred HHHHHHHHHhccCCC
Q 005044 465 QRRVALALAHLCSPD 479 (717)
Q Consensus 465 ~~~a~~aL~~l~~~~ 479 (717)
...+-.+|..|-.+.
T Consensus 432 e~~akaALRDLGc~v 446 (461)
T KOG4199|consen 432 EAAAKAALRDLGCDV 446 (461)
T ss_pred HHHHHHHHHhcCcch
Confidence 888888888885543
No 17
>KOG4500 consensus Rho/Rac GTPase guanine nucleotide exchange factor smgGDS/Vimar [Signal transduction mechanisms]
Probab=99.82 E-value=4.6e-18 Score=162.80 Aligned_cols=427 Identities=17% Similarity=0.135 Sum_probs=315.4
Q ss_pred HHHHHHHHHHHhhcChhhHHHHHh----CCChHHHHHhhcCCCCCccccCCCccchHHHhHHHHHHHHhc-CChhhHHHH
Q 005044 79 AAKRATHVLAELAKNEEVVNWIVE----GGAVPALVKHLQAPPTSEADRNLKPFEHEVEKGSAFALGLLA-VKPEHQQLI 153 (717)
Q Consensus 79 ~~~~a~~~L~~l~~~~~~~~~~~~----~g~i~~L~~lL~~~~~~~~~~~~~~~~~~v~~~a~~~L~~l~-~~~~~~~~~ 153 (717)
+...+..++...+.++..|..+.. +|.++.|.+...+++. ++..++.++|+|+| ++.++|..+
T Consensus 58 v~~~qssC~A~~sk~ev~r~~F~~~~I~a~~le~Lrq~psS~d~------------ev~~Q~~RaLgNiCydn~E~R~a~ 125 (604)
T KOG4500|consen 58 VYLFQSSCLADRSKNEVERSLFRNYCIDAEALELLRQTPSSPDT------------EVHEQCFRALGNICYDNNENRAAF 125 (604)
T ss_pred hhhhhHHHHHHHhhhHHHHHHHHHHhhHHHHHHHHHhCCCCCcc------------cHHHHHHHHHhhhhccCchhHHHH
Confidence 466667777777776665555544 4556666666666655 99999999999999 999999999
Q ss_pred HhCCChHHHHHHHhccccCCCccchhHHHHHHHHHHHHHhhcCchhhhHHHhcCCcHHHHHhhc--CCCHHHHHHHHHHH
Q 005044 154 VDNGALSHLVNLLKRHMDSNCSRAVNSVIRRAADAITNLAHENSSIKTRVRMEGGIPPLVELLE--FTDTKVQRAAAGAL 231 (717)
Q Consensus 154 ~~~~~i~~L~~lL~~~~~~~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~--~~~~~v~~~a~~~L 231 (717)
.+.|+-+.++++|+..-....+ ...+....+...|.|...++.+.+....+.|+++.|...+. ..+....+..+...
T Consensus 126 ~~lgGaqivid~L~~~cs~d~~-ane~~~~v~~g~l~Ny~l~~~~l~aq~~~~gVl~tL~~~~~I~~qNaa~~e~ll~~f 204 (604)
T KOG4500|consen 126 FNLGGAQIVIDVLKPYCSKDNP-ANEEYSAVAFGVLHNYILDSRELRAQVADAGVLNTLAITYWIDWQNAALTEKLLAPF 204 (604)
T ss_pred HhcCCceehHhhhccccccCCc-cHHHHHHHHHHHHHHhhCCcHHHHHHHHhcccHHHHHHHhhcccccHHHHHHHHhcc
Confidence 9999988888888765432221 12267778889999999999999999999999999988763 45666666666666
Q ss_pred HHhhccChhh-HHHHHhcCCHHHHHHHHcC-CCHHHHHHHHHHHHHhhcCChHHHHHHHHcCChHHHHHhhcc-CCh---
Q 005044 232 RTLAFKNDEN-KNQIVECNALPTLILMLRS-EDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLSS-CCS--- 305 (717)
Q Consensus 232 ~~L~~~~~~~-~~~~~~~g~i~~L~~ll~~-~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~l~~L~~ll~~-~~~--- 305 (717)
.|+.+-..++ .....+..+...+++++.. -+++.+..+...+...+.+ +..+-.+.+.|.+..++.+++. ...
T Consensus 205 ~nlls~~~e~~~~~~~d~sl~~~l~~ll~~~v~~d~~eM~feila~~aen-d~Vkl~la~~gl~e~~~~lv~~~k~~t~k 283 (604)
T KOG4500|consen 205 FNLLSFVCEMLYPFCKDCSLVFMLLQLLPSMVREDIDEMIFEILAKAAEN-DLVKLSLAQNGLLEDSIDLVRNMKDFTKK 283 (604)
T ss_pred ccHHHHHHHhhhhhhccchHHHHHHHHHHHhhccchhhHHHHHHHHHhcC-cceeeehhhcchHHHHHHHHHhcccccch
Confidence 6665432232 3334456677778888865 4667788888888888754 5566778889999999999876 211
Q ss_pred ----HHHHHHHHHHHHHhcCChhhHHHHHhcCChHHHHHHhcCCCHHHHHHHHHHHHHhhcCCCCchhhHhcCChHHHHH
Q 005044 306 ----ESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQSPDVQLREMSAFALGRLAQDMHNQAGIAHNGGLVPLLK 381 (717)
Q Consensus 306 ----~~~~~a~~~L~~l~~~~~~~~~~l~~~~~l~~L~~~l~~~~~~v~~~a~~~L~~l~~~~~~~~~l~~~~~l~~L~~ 381 (717)
...+.++....-+..+++..........++..+.+|+.+.+.+....+..+++|+++.+.++..+++.+.+..|+.
T Consensus 284 ~d~~~l~k~~~el~vllltGDeSMq~L~~~p~~l~~~~sw~~S~d~~l~t~g~LaigNfaR~D~~ci~~v~~~~~nkL~~ 363 (604)
T KOG4500|consen 284 TDMLNLFKRIAELDVLLLTGDESMQKLHADPQFLDFLESWFRSDDSNLITMGSLAIGNFARRDDICIQLVQKDFLNKLIS 363 (604)
T ss_pred HHHHHHHHhhhhHhhhhhcCchHHHHHhcCcHHHHHHHHHhcCCchhHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHH
Confidence 1223344444444445545444333344899999999999999999999999999999999999999999999999
Q ss_pred hhc-----CCChhHHHHHHHHHHhccCCCcchHHHHHhcCccccccchhHHhhh-HHHHHHHHHHH---------HHHhh
Q 005044 382 LLD-----SKNGSLQHNAAFALYGLADNEDNVADFIRVGGVQKLQDGEFIVQAT-KDCVAKTLKRL---------EEKIH 446 (717)
Q Consensus 382 ll~-----~~~~~v~~~a~~~L~~l~~~~~~~~~l~~~~~i~~L~~~~~~~~~~-~~~~~~~~~~l---------~~~~~ 446 (717)
++. +++.+++..++.+|+|+.-...++..+...|+.+..+.......+. ..-+..+++.+ +-.-.
T Consensus 364 ~l~~~~~vdgnV~~qhA~lsALRnl~IPv~nka~~~~aGvteaIL~~lk~~~ppv~fkllgTlrM~~d~qe~~a~eL~kn 443 (604)
T KOG4500|consen 364 CLMQEKDVDGNVERQHACLSALRNLMIPVSNKAHFAPAGVTEAILLQLKLASPPVTFKLLGTLRMIRDSQEYIACELAKN 443 (604)
T ss_pred HHHHhcCCCccchhHHHHHHHHHhccccCCchhhccccchHHHHHHHHHhcCCcchHHHHHHHHHHHhchHHHHHHHhcC
Confidence 884 4678899999999999999999999999999887765433222211 11111111111 11124
Q ss_pred hchHHHHHHHHhhcchh-HHHHHHHHHHhccCCCC---CceeeecCCCHHHHHHHhcCCCchhhhhhHHHHHHhhhc
Q 005044 447 GRVLNHLLYLMRVAEKG-VQRRVALALAHLCSPDD---QRTIFIDGGGLELLLGLLGSTNPKQQLDGAVALFKLANK 519 (717)
Q Consensus 447 ~~~~~~L~~ll~~~~~~-v~~~a~~aL~~l~~~~~---~~~~~~~~~~l~~L~~ll~~~~~~v~~~a~~~l~~L~~~ 519 (717)
...+.+|++-.++++.. +..++.+.+..+..+.. ....+.+.||+..++.++...+-..+.+|..+++-+...
T Consensus 444 ~~l~ekLv~Wsks~D~aGv~gESnRll~~lIkHs~~kdv~~tvpksg~ik~~Vsm~t~~hi~mqnEalVal~~~~~~ 520 (604)
T KOG4500|consen 444 PELFEKLVDWSKSPDFAGVAGESNRLLLGLIKHSKYKDVILTVPKSGGIKEKVSMFTKNHINMQNEALVALLSTESK 520 (604)
T ss_pred HHHHHHHHHhhhCCccchhhhhhhHHHHHHHHhhHhhhhHhhccccccHHHHHHHHHHhhHHHhHHHHHHHHHHHHH
Confidence 45788888888888775 88889998888876643 445667889999999999999999999999999888764
No 18
>KOG2075 consensus Topoisomerase TOP1-interacting protein BTBD1 [Function unknown]
Probab=99.80 E-value=1e-18 Score=169.98 Aligned_cols=166 Identities=27% Similarity=0.446 Sum_probs=150.9
Q ss_pred HHhhcCCCCccEEEEEcC-----eEeehhHHHHhhccHHHHHhhcCCCCCCCCcceEcCCCCHHHHHHHHHHHhcCcccc
Q 005044 541 DQFVNNATLSDVTFLVEG-----RRFYAHRICLLASSDAFRAMFDGGYREKDARDIEIPNIRWEVFELMMRFIYTGSVDV 615 (717)
Q Consensus 541 ~~~~~~~~~~Dv~~~~~~-----~~~~~h~~il~~~s~~f~~~~~~~~~e~~~~~i~l~~~~~~~~~~~l~~~Yt~~~~~ 615 (717)
-.++.+...+|+.+++++ ..+++||.+|+..|..|++||++++.+....+|.++++.+.+|..+|+|+|++.+.+
T Consensus 106 ~~l~~n~~~adv~fivg~~~~~~q~~paHk~vla~gS~VFdaMf~g~~a~~~s~ei~lpdvepaaFl~~L~flYsdev~~ 185 (521)
T KOG2075|consen 106 AALFNNELLADVHFIVGEEDGGSQRIPAHKLVLADGSDVFDAMFYGGLAEDASLEIRLPDVEPAAFLAFLRFLYSDEVKL 185 (521)
T ss_pred HhhccCcccceeEEEeccCCCcccccchhhhhhhcchHHHHHHhccCcccccCceeecCCcChhHhHHHHHHHhcchhhh
Confidence 356788899999999984 689999999999999999999999999978899999999999999999999999999
Q ss_pred chhhHHHHHHHHHhhChHhHHHHHHHHHHhcCChhcHHHHHHH-HHHcCcHHHHHHHHHHHHHhHHHhcCCchhhhchhh
Q 005044 616 TLDIAQDLLRAADQYLLEGLKRLCEYTIAQDISLENVSSMYEL-SEAFHAISLRHTCILYIMEHFDKLSTRPGHSNLIQR 694 (717)
Q Consensus 616 ~~~~~~~ll~~A~~~~~~~l~~~c~~~l~~~i~~~n~~~~~~~-a~~~~~~~L~~~~~~~i~~~~~~~~~~~~f~~l~~~ 694 (717)
..++++.++++|++|.++.|.+.|.+|+..++...|.+..+-- |..++.++|.+.|++-|..+|++....++|.++...
T Consensus 186 ~~dtvi~tl~~AkKY~VpaLer~CVkflr~~l~~~naf~~L~q~A~lf~ep~Li~~c~e~id~~~~~al~~EGf~did~~ 265 (521)
T KOG2075|consen 186 AADTVITTLYAAKKYLVPALERQCVKFLRKNLMADNAFLELFQRAKLFDEPSLISICLEVIDKSFEDALTPEGFCDIDST 265 (521)
T ss_pred hHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhcCChHHHHHHHHHHHhhcCHHHHHHHHHHhhhHHHhhhCccceeehhhH
Confidence 9999999999999999999999999999999988887777665 999999999999999999999999999999999744
Q ss_pred cHHHHHHHHHhhc
Q 005044 695 IIPEIHNYFAKAL 707 (717)
Q Consensus 695 ~~~~l~~~l~~~~ 707 (717)
.+.+.+.++.-.
T Consensus 266 -~dt~~evl~r~~ 277 (521)
T KOG2075|consen 266 -RDTYEEVLRRDT 277 (521)
T ss_pred -HHHHHHHHhhcc
Confidence 555555555443
No 19
>KOG2122 consensus Beta-catenin-binding protein APC, contains ARM repeats [Signal transduction mechanisms; Cytoskeleton]
Probab=99.80 E-value=8.2e-18 Score=181.84 Aligned_cols=357 Identities=18% Similarity=0.207 Sum_probs=282.1
Q ss_pred HHHHHHHHHHhhcChhhHHHHHhCCChHHHHHhhcCCCCCccccCCCccchHHHhHHHHHHHHhc-CChhh---HHHHHh
Q 005044 80 AKRATHVLAELAKNEEVVNWIVEGGAVPALVKHLQAPPTSEADRNLKPFEHEVEKGSAFALGLLA-VKPEH---QQLIVD 155 (717)
Q Consensus 80 ~~~a~~~L~~l~~~~~~~~~~~~~g~i~~L~~lL~~~~~~~~~~~~~~~~~~v~~~a~~~L~~l~-~~~~~---~~~~~~ 155 (717)
.++..+.|..++.+++.+..++..|++|.|+++|...+.. +.+.+..|-.+|.||. ..++. |..+..
T Consensus 211 ~ee~ar~fLemSss~esCaamR~SgCLpLLvQilH~~d~~---------~kear~~A~aALHNIVhSqPD~kr~RRE~kv 281 (2195)
T KOG2122|consen 211 EEEMARTFLEMSSSPESCAAMRRSGCLPLLVQILHGPDDE---------DKEARKRASAALHNIVHSQPDEKRGRREKKV 281 (2195)
T ss_pred HHHHHHHHHHhccCchhhHHHHhccchHHHHHHhhCCchh---------hHHHHHHHHHHHHHHhhcCcchhhhHHHHHH
Confidence 4677888999999999999999999999999999876652 3389999999999999 55443 333332
Q ss_pred CCChHHHHHHH-------hccccCCCccchhHHHHHHHHHHHHHhhcCchhhhHHHhcCCcHHHHHhhcC-----C----
Q 005044 156 NGALSHLVNLL-------KRHMDSNCSRAVNSVIRRAADAITNLAHENSSIKTRVRMEGGIPPLVELLEF-----T---- 219 (717)
Q Consensus 156 ~~~i~~L~~lL-------~~~~~~~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~-----~---- 219 (717)
..++..+..+. ........+.+...-+..|+.+|..+++ +++.|..+.+.|++..+..++.- .
T Consensus 282 L~lLeQIraYC~~~~~~lqar~~~~apa~~~H~lcaA~~~lMK~SF-DEEhR~aM~ELG~LqAIaeLl~vDh~mhgp~tn 360 (2195)
T KOG2122|consen 282 LHLLEQIRAYCETCWTWLQARGPAIAPASDEHQLCAALCTLMKLSF-DEEHRHAMNELGGLQAIAELLQVDHEMHGPETN 360 (2195)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCCCCCCcccchhhHHHHHHHHHhhc-cHHHHHHHHHhhhHHHHHHHHHHHHHhcCCCCC
Confidence 23333332222 2222222222222445578888889988 78889999999999999887742 1
Q ss_pred ---CHHHHHHHHHHHHHhhccChhhHHHHHh-cCCHHHHHHHHcCCCHHHHHHHHHHHHHhhcCChH-HHHHHHHcCChH
Q 005044 220 ---DTKVQRAAAGALRTLAFKNDENKNQIVE-CNALPTLILMLRSEDSAIHYEAVGVIGNLVHSSPN-IKKEVLAAGALQ 294 (717)
Q Consensus 220 ---~~~v~~~a~~~L~~L~~~~~~~~~~~~~-~g~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~-~~~~~~~~g~l~ 294 (717)
...+|..+..+|.||+.++..++..++. .|++..++..|.+..+++....+.+|.||+..-+. .++.+-+.|-+.
T Consensus 361 d~~~~aLRrYa~MALTNLTFGDv~NKa~LCs~rgfMeavVAQL~s~peeL~QV~AsvLRNLSWRAD~nmKkvLrE~GsVt 440 (2195)
T KOG2122|consen 361 DGECNALRRYAGMALTNLTFGDVANKATLCSQRGFMEAVVAQLISAPEELLQVYASVLRNLSWRADSNMKKVLRETGSVT 440 (2195)
T ss_pred cHHHHHHHHHHHHHhhccccccccchhhhhhhhhHHHHHHHHHhcChHHHHHHHHHHHHhccccccccHHHHHHhhhhHH
Confidence 2469999999999999999888888875 68999999999999889999999999999876444 455555678888
Q ss_pred HHHHhh-ccCChHHHHHHHHHHHHHhcCChhhHHHHHh-cCChHHHHHHhcC----CCHHHHHHHHHHHHHhhc----CC
Q 005044 295 PVIGLL-SSCCSESQREAALLLGQFAATDSDCKVHIVQ-RGAVRPLIEMLQS----PDVQLREMSAFALGRLAQ----DM 364 (717)
Q Consensus 295 ~L~~ll-~~~~~~~~~~a~~~L~~l~~~~~~~~~~l~~-~~~l~~L~~~l~~----~~~~v~~~a~~~L~~l~~----~~ 364 (717)
.|+.+- ........+..+.+||||+.++.+++..|-. .|.+..|+.+|.- ....+.+.+.++|.|.+. ..
T Consensus 441 aLa~~al~~~kEsTLKavLSALWNLSAHcteNKA~iCaVDGALaFLVg~LSY~~qs~tLaIIEsaGGILRNVSS~IAt~E 520 (2195)
T KOG2122|consen 441 ALAACALRNKKESTLKAVLSALWNLSAHCTENKAEICAVDGALAFLVGTLSYEGQSNTLAIIESAGGILRNVSSLIATCE 520 (2195)
T ss_pred HHHHHHHHhcccchHHHHHHHHhhhhhcccccchhhhcccchHHHHHhhccccCCcchhhhhhcCccHHHHHHhHhhccc
Confidence 888765 4445577788999999999999999887765 7899999999954 355788899999998764 44
Q ss_pred CCchhhHhcCChHHHHHhhcCCChhHHHHHHHHHHhc-cCCCcchHHHHHhcCccccccchhHHhhhHHHHHHHHHHHHH
Q 005044 365 HNQAGIAHNGGLVPLLKLLDSKNGSLQHNAAFALYGL-ADNEDNVADFIRVGGVQKLQDGEFIVQATKDCVAKTLKRLEE 443 (717)
Q Consensus 365 ~~~~~l~~~~~l~~L~~ll~~~~~~v~~~a~~~L~~l-~~~~~~~~~l~~~~~i~~L~~~~~~~~~~~~~~~~~~~~l~~ 443 (717)
+.+..+.+.+.+..|++.|++.+-.+..++|.+|+|| +++++..+.+++.|
T Consensus 521 ~yRQILR~~NCLq~LLQ~LKS~SLTiVSNaCGTLWNLSAR~p~DQq~LwD~g---------------------------- 572 (2195)
T KOG2122|consen 521 DYRQILRRHNCLQTLLQHLKSHSLTIVSNACGTLWNLSARSPEDQQMLWDDG---------------------------- 572 (2195)
T ss_pred hHHHHHHHhhHHHHHHHHhhhcceEEeecchhhhhhhhcCCHHHHHHHHhcc----------------------------
Confidence 5567788889999999999999999999999999999 56888888888877
Q ss_pred HhhhchHHHHHHHHhhcchhHHHHHHHHHHhccCCC
Q 005044 444 KIHGRVLNHLLYLMRVAEKGVQRRVALALAHLCSPD 479 (717)
Q Consensus 444 ~~~~~~~~~L~~ll~~~~~~v~~~a~~aL~~l~~~~ 479 (717)
.++-|.+++++.+..+-+-++.+|.|+....
T Consensus 573 -----Av~mLrnLIhSKhkMIa~GSaaALrNLln~R 603 (2195)
T KOG2122|consen 573 -----AVPMLRNLIHSKHKMIAMGSAAALRNLLNFR 603 (2195)
T ss_pred -----cHHHHHHHHhhhhhhhhhhHHHHHHHHhcCC
Confidence 5666889999999999999999999997665
No 20
>KOG1048 consensus Neural adherens junction protein Plakophilin and related Armadillo repeat proteins [Signal transduction mechanisms; Extracellular structures]
Probab=99.79 E-value=9.1e-18 Score=174.75 Aligned_cols=357 Identities=23% Similarity=0.276 Sum_probs=275.3
Q ss_pred hHHHHHhhcCCCCCccccCCCccchHHHhHHHHHHHHhc-CChhhHHHHHhCCChHHHHHHHhccccCCCccchhHHHHH
Q 005044 106 VPALVKHLQAPPTSEADRNLKPFEHEVEKGSAFALGLLA-VKPEHQQLIVDNGALSHLVNLLKRHMDSNCSRAVNSVIRR 184 (717)
Q Consensus 106 i~~L~~lL~~~~~~~~~~~~~~~~~~v~~~a~~~L~~l~-~~~~~~~~~~~~~~i~~L~~lL~~~~~~~~~~~~~~~~~~ 184 (717)
+|..+.+|.+.++ .++..|+..+..+| .+.+.+..+.+.|+|+.|+.+|..... +++..
T Consensus 235 lpe~i~mL~~q~~------------~~qsnaaaylQHlcfgd~~ik~~vrqlggI~kLv~Ll~~~~~--------evq~~ 294 (717)
T KOG1048|consen 235 LPEVISMLMSQDP------------SVQSNAAAYLQHLCFGDNKIKSRVRQLGGIPKLVALLDHRND--------EVQRQ 294 (717)
T ss_pred cHHHHHHHhccCh------------hhhHHHHHHHHHHHhhhHHHHHHHHHhccHHHHHHHhcCCcH--------HHHHH
Confidence 4556666666555 89999999999999 888999999999999999999999887 99999
Q ss_pred HHHHHHHHhhcCch--hhhHHHhcCCcHHHHHhhcC-CCHHHHHHHHHHHHHhhccChhhHHHHHhcCCHHHHHHHHcCC
Q 005044 185 AADAITNLAHENSS--IKTRVRMEGGIPPLVELLEF-TDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSE 261 (717)
Q Consensus 185 a~~~L~~l~~~~~~--~~~~~~~~~~i~~L~~ll~~-~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~g~i~~L~~ll~~~ 261 (717)
|+++|.||.+.... ++-.+.+.++++.++++|+. .|.++++.+..+|+||++ .+..+..++. ..+..|...+-.+
T Consensus 295 acgaLRNLvf~~~~~~NKlai~~~~Gv~~l~~~Lr~t~D~ev~e~iTg~LWNLSS-~D~lK~~ii~-~al~tLt~~vI~P 372 (717)
T KOG1048|consen 295 ACGALRNLVFGKSTDSNKLAIKELNGVPTLVRLLRHTQDDEVRELITGILWNLSS-NDALKMLIIT-SALSTLTDNVIIP 372 (717)
T ss_pred HHHHHHhhhcccCCcccchhhhhcCChHHHHHHHHhhcchHHHHHHHHHHhcccc-hhHHHHHHHH-HHHHHHHHhhccc
Confidence 99999999987666 88889999999999999987 789999999999999997 4555554544 3566666654311
Q ss_pred --------------CHHHHHHHHHHHHHhhcCChHHHHHHHH-cCChHHHHHhhcc------CChHHHHHHHHHHHHHhc
Q 005044 262 --------------DSAIHYEAVGVIGNLVHSSPNIKKEVLA-AGALQPVIGLLSS------CCSESQREAALLLGQFAA 320 (717)
Q Consensus 262 --------------~~~v~~~a~~~L~~l~~~~~~~~~~~~~-~g~l~~L~~ll~~------~~~~~~~~a~~~L~~l~~ 320 (717)
+.++...+..+|.|++....+.++.+.+ .|+|+.|+..+++ .+....++|..++.|+.-
T Consensus 373 ~Sgw~~~~~~~~~~~~~vf~n~tgcLRNlSs~~~eaR~~mr~c~GLIdaL~~~iq~~i~~~~~d~K~VENcvCilRNLSY 452 (717)
T KOG1048|consen 373 HSGWEEEPAPRKAEDSTVFRNVTGCLRNLSSAGQEAREQMRECDGLIDALLFSIQTAIQKSDLDSKSVENCVCILRNLSY 452 (717)
T ss_pred ccccCCCCcccccccceeeehhhhhhccccchhHHHHHHHhhccchHHHHHHHHHHHHHhccccchhHHHHHHHHhhcCc
Confidence 3578899999999998877777777776 6899999988863 345677888888888841
Q ss_pred CCh-----h--------------------------hHHH----------------------HHhcCChHHHHHHhc-CCC
Q 005044 321 TDS-----D--------------------------CKVH----------------------IVQRGAVRPLIEMLQ-SPD 346 (717)
Q Consensus 321 ~~~-----~--------------------------~~~~----------------------l~~~~~l~~L~~~l~-~~~ 346 (717)
.-. . .... +....++..-+.++. +.+
T Consensus 453 rl~~Evp~~~~~~~~~~~~~~~~~~~~~~~gcf~~k~~k~~~~~~~~~~pe~~~~pkG~e~Lw~p~vVr~Yl~Ll~~s~n 532 (717)
T KOG1048|consen 453 RLEAEVPPKYRQVLANIARLPGVGPPAESVGCFGFKKRKSDDNCDDLPIPERATAPKGSEWLWHPSVVRPYLLLLALSKN 532 (717)
T ss_pred hhhhhcCHhhhhHhhcccccccCCCcccccccccchhhhchhcccccCCcccccCCCCceeeecHHHHHHHHHHHHHhcc
Confidence 000 0 0000 111224444444443 467
Q ss_pred HHHHHHHHHHHHHhhcCCCC-----ch-hhHhcCChHHHHHhhcCCChhHHHHHHHHHHhccCCCcchHHHHHhcCcccc
Q 005044 347 VQLREMSAFALGRLAQDMHN-----QA-GIAHNGGLVPLLKLLDSKNGSLQHNAAFALYGLADNEDNVADFIRVGGVQKL 420 (717)
Q Consensus 347 ~~v~~~a~~~L~~l~~~~~~-----~~-~l~~~~~l~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~l~~~~~i~~L 420 (717)
+.+.++++.+|-||+..... +. .+.+..++++|+++++.++..|...++.+|+||+.+..++..+..
T Consensus 533 ~~TlEasaGaLQNltA~~~~~~~~~~~~v~~kekgl~~l~~ll~~~~~~vv~s~a~~LrNls~d~rnk~ligk------- 605 (717)
T KOG1048|consen 533 DNTLEASAGALQNLTAGLWTWSEYMRGAVFRKEKGLPPLVELLRNDDSDVVRSAAGALRNLSRDIRNKELIGK------- 605 (717)
T ss_pred hHHHHHhhhhHhhhhccCCcchhHHHhhhhhhccCccHHHHHHhcCCchHHHHHHHHHhhhccCchhhhhhhc-------
Confidence 88999999999999975432 22 347788999999999999999999999999999999988766553
Q ss_pred ccchhHHhhhHHHHHHHHHHHHHHhhhchHHHHHHHHhhcc------hhHHHHHHHHHHhcc-CCCCCceeeecCCCHHH
Q 005044 421 QDGEFIVQATKDCVAKTLKRLEEKIHGRVLNHLLYLMRVAE------KGVQRRVALALAHLC-SPDDQRTIFIDGGGLEL 493 (717)
Q Consensus 421 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~L~~ll~~~~------~~v~~~a~~aL~~l~-~~~~~~~~~~~~~~l~~ 493 (717)
.+++.|+..|..+. .++...++.+|.++. .+..+.+.+.+.++++.
T Consensus 606 ---------------------------~a~~~lv~~Lp~~~~~~~~sedtv~~vc~tl~niv~~~~~nAkdl~~~~g~~k 658 (717)
T KOG1048|consen 606 ---------------------------YAIPDLVRCLPGSGPSTSLSEDTVRAVCHTLNNIVRKNVLNAKDLLEIKGIPK 658 (717)
T ss_pred ---------------------------chHHHHHHhCcCCCCCcCchHHHHHHHHHhHHHHHHHhHHHHHHHHhccChHH
Confidence 25777888887653 578888999999997 45557788889999999
Q ss_pred HHHHhcCCC-chhhhhhHHHHHHhhh
Q 005044 494 LLGLLGSTN-PKQQLDGAVALFKLAN 518 (717)
Q Consensus 494 L~~ll~~~~-~~v~~~a~~~l~~L~~ 518 (717)
|+.+..+.. +.+-++|...|..|=.
T Consensus 659 L~~I~~s~~S~k~~kaAs~vL~~lW~ 684 (717)
T KOG1048|consen 659 LRLISKSQHSPKEFKAASSVLDVLWQ 684 (717)
T ss_pred HHHHhcccCCHHHHHHHHHHHHHHHH
Confidence 999988743 3566666666665543
No 21
>KOG4591 consensus Uncharacterized conserved protein, contains BTB/POZ domain [General function prediction only]
Probab=99.77 E-value=1.9e-18 Score=147.10 Aligned_cols=152 Identities=24% Similarity=0.465 Sum_probs=131.5
Q ss_pred hHHhhcCCCCccEEEEEcC---eEeehhHHHHhhccHHHHHhhcCCCCCCCCcceEcCCCCHHHHHHHHHHHhcCcccc-
Q 005044 540 GDQFVNNATLSDVTFLVEG---RRFYAHRICLLASSDAFRAMFDGGYREKDARDIEIPNIRWEVFELMMRFIYTGSVDV- 615 (717)
Q Consensus 540 ~~~~~~~~~~~Dv~~~~~~---~~~~~h~~il~~~s~~f~~~~~~~~~e~~~~~i~l~~~~~~~~~~~l~~~Yt~~~~~- 615 (717)
...++....++|+.|.++| +.+++||.||++||+|++ |..+-.| ......+.+.++++|...++|+||+.+++
T Consensus 57 tadL~Ek~qfSDlk~K~~gns~k~i~AHKfVLAARsD~Wk--faN~~de-kse~~~~dDad~Ea~~t~iRWIYTDEidfk 133 (280)
T KOG4591|consen 57 TADLLEKEQFSDLKFKFAGNSDKHIPAHKFVLAARSDFWK--FANGGDE-KSEELDLDDADFEAFHTAIRWIYTDEIDFK 133 (280)
T ss_pred HHHHhhcccccceeEEecCCccccCchhhhhhhhhcchhh--hccCCCc-chhhhcccccCHHHHHHhheeeeccccccc
Confidence 3567778899999999984 889999999999999986 2222122 23466778999999999999999999885
Q ss_pred -chhhHHHHHHHHHhhChHhHHHHHHHHHHhcCChhcHHHHHHHHHHcCcHHHHHHHHHHHHHhHHHhcCCchhhhchhh
Q 005044 616 -TLDIAQDLLRAADQYLLEGLKRLCEYTIAQDISLENVSSMYELSEAFHAISLRHTCILYIMEHFDKLSTRPGHSNLIQR 694 (717)
Q Consensus 616 -~~~~~~~ll~~A~~~~~~~l~~~c~~~l~~~i~~~n~~~~~~~a~~~~~~~L~~~~~~~i~~~~~~~~~~~~f~~l~~~ 694 (717)
..+.+.++.+.|+.|++.-|+..|+.-+...++++||+.+|.+|+..+...|...|...|.-+|.++-. ++|.+++..
T Consensus 134 ~dD~~L~el~e~An~FqLe~Lke~C~k~l~a~l~V~NCIk~Ye~AEe~n~~qL~n~~~eiIA~~W~dL~~-a~FaqMs~a 212 (280)
T KOG4591|consen 134 EDDEFLLELCELANRFQLELLKERCEKGLGALLHVDNCIKFYEFAEELNARQLMNVAAEIIAGAWDDLGK-ADFAQMSAA 212 (280)
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhhHhhHHHHHHHHHHhhHHHHHHHHHHHHHhhccccCh-HHHHhccHH
Confidence 556788999999999999999999999999999999999999999999999999999999999999865 778888444
Q ss_pred c
Q 005044 695 I 695 (717)
Q Consensus 695 ~ 695 (717)
.
T Consensus 213 L 213 (280)
T KOG4591|consen 213 L 213 (280)
T ss_pred H
Confidence 3
No 22
>KOG4199 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.77 E-value=9.9e-16 Score=142.46 Aligned_cols=312 Identities=17% Similarity=0.237 Sum_probs=256.2
Q ss_pred HHHHHHHHHHHHHHHhhc-ChhhHHHHHhCCChHHHHHhhcCCCCCccccCCCccchHHHhHHHHHHHHhc-CChhhHHH
Q 005044 75 ADRAAAKRATHVLAELAK-NEEVVNWIVEGGAVPALVKHLQAPPTSEADRNLKPFEHEVEKGSAFALGLLA-VKPEHQQL 152 (717)
Q Consensus 75 ~~~~~~~~a~~~L~~l~~-~~~~~~~~~~~g~i~~L~~lL~~~~~~~~~~~~~~~~~~v~~~a~~~L~~l~-~~~~~~~~ 152 (717)
++..+...++.+|..+.. .|+ +....++..++.+|..... +.++....++++..-| .++.+|..
T Consensus 119 ~~~~~l~ksL~al~~lt~~qpd----l~da~g~~vvv~lL~~~~~----------~~dlt~~~~~~v~~Ac~~hE~nrQ~ 184 (461)
T KOG4199|consen 119 PNESVLKKSLEAINSLTHKQPD----LFDAEAMAVVLKLLALKVE----------SEEVTLLTLQWLQKACIMHEVNRQL 184 (461)
T ss_pred CchhHHHHHHHHHHHhhcCCcc----hhccccHHHHHHHHhcccc----------hHHHHHHHHHHHHHHHHHhHHHHHH
Confidence 344567788888877776 344 5667789999999977554 2389999999999999 89999999
Q ss_pred HHhCCChHHHHHHHhccccCCCccchhHHHHHHHHHHHHHhhcCc---------hhhhHHHhcCCcHHHHHhhcC-CCHH
Q 005044 153 IVDNGALSHLVNLLKRHMDSNCSRAVNSVIRRAADAITNLAHENS---------SIKTRVRMEGGIPPLVELLEF-TDTK 222 (717)
Q Consensus 153 ~~~~~~i~~L~~lL~~~~~~~~~~~~~~~~~~a~~~L~~l~~~~~---------~~~~~~~~~~~i~~L~~ll~~-~~~~ 222 (717)
+.+.++++.+...|.+.... .+.+.+.++++.|..++. .....+...|++..|++.++- -+|.
T Consensus 185 ~m~~~il~Li~~~l~~~gk~-------~~VRel~~a~r~l~~dDDiRV~fg~ah~hAr~ia~e~~l~~L~Eal~A~~dp~ 257 (461)
T KOG4199|consen 185 FMELKILELILQVLNREGKT-------RTVRELYDAIRALLTDDDIRVVFGQAHGHARTIAKEGILTALTEALQAGIDPD 257 (461)
T ss_pred HHHhhHHHHHHHHHcccCcc-------HHHHHHHHHHHHhcCCCceeeecchhhHHHHHHHHhhhHHHHHHHHHccCCcc
Confidence 99999999999888776653 688889999999886332 234567778889999998865 4688
Q ss_pred HHHHHHHHHHHhhccChhhHHHHHhcCCHHHHHHHHcCC-CHH---HHHHHHHHHHHhhcCChHHHHHHHHcCChHHHHH
Q 005044 223 VQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSE-DSA---IHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIG 298 (717)
Q Consensus 223 v~~~a~~~L~~L~~~~~~~~~~~~~~g~i~~L~~ll~~~-~~~---v~~~a~~~L~~l~~~~~~~~~~~~~~g~l~~L~~ 298 (717)
+....+.+|..|+- +++..+.+.+.|++..|++++.+. +.. ....++..|+.++ +++..+..+++.|+.+.++.
T Consensus 258 ~L~~l~~tl~~lAV-r~E~C~~I~e~GGl~tl~~~i~d~n~~~~r~l~k~~lslLralA-G~DsvKs~IV~~gg~~~ii~ 335 (461)
T KOG4199|consen 258 SLVSLSTTLKALAV-RDEICKSIAESGGLDTLLRCIDDSNEQGNRTLAKTCLSLLRALA-GSDSVKSTIVEKGGLDKIIT 335 (461)
T ss_pred HHHHHHHHHHHHHH-HHHHHHHHHHccCHHHHHHHHhhhchhhHHHHHHHHHHHHHHHh-CCCchHHHHHHhcChHHHHH
Confidence 88999999999997 788999999999999999999874 334 4467888888886 45677899999999999999
Q ss_pred hhcc--CChHHHHHHHHHHHHHhcCChhhHHHHHhcCChHHHHHHhcCC--CHHHHHHHHHHHHHhhcCCCCchhhHhcC
Q 005044 299 LLSS--CCSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQSP--DVQLREMSAFALGRLAQDMHNQAGIAHNG 374 (717)
Q Consensus 299 ll~~--~~~~~~~~a~~~L~~l~~~~~~~~~~l~~~~~l~~L~~~l~~~--~~~v~~~a~~~L~~l~~~~~~~~~l~~~~ 374 (717)
++.. +++.+..+++.+++-++-..|+....+++.|+-...++.|+.. ...+++++||++.|++..+.+...+.-..
T Consensus 336 l~~~h~~~p~Vi~~~~a~i~~l~LR~pdhsa~~ie~G~a~~avqAmkahP~~a~vQrnac~~IRNiv~rs~~~~~~~l~~ 415 (461)
T KOG4199|consen 336 LALRHSDDPLVIQEVMAIISILCLRSPDHSAKAIEAGAADLAVQAMKAHPVAAQVQRNACNMIRNIVVRSAENRTILLAN 415 (461)
T ss_pred HHHHcCCChHHHHHHHHHHHHHHhcCcchHHHHHhcchHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHhhhhccchHHhc
Confidence 8853 5688999999999999988999999999999999999999763 56799999999999997665555555667
Q ss_pred ChHHHHHhhcCCChhHHHHHHHHHHhccCCCcchH
Q 005044 375 GLVPLLKLLDSKNGSLQHNAAFALYGLADNEDNVA 409 (717)
Q Consensus 375 ~l~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~ 409 (717)
|++.|+...+..++.....+..+|+.|-.+...++
T Consensus 416 GiE~Li~~A~~~h~tce~~akaALRDLGc~v~lre 450 (461)
T KOG4199|consen 416 GIEKLIRTAKANHETCEAAAKAALRDLGCDVYLRE 450 (461)
T ss_pred cHHHHHHHHHhcCccHHHHHHHHHHhcCcchhhHH
Confidence 78899999999999999999999999976554443
No 23
>KOG1048 consensus Neural adherens junction protein Plakophilin and related Armadillo repeat proteins [Signal transduction mechanisms; Extracellular structures]
Probab=99.76 E-value=4.7e-17 Score=169.50 Aligned_cols=336 Identities=21% Similarity=0.287 Sum_probs=258.7
Q ss_pred HHHHHHhhhhhccccchHHHHHHHHHHHHHHHHhhc-ChhhHHHHHhCCChHHHHHhhcCCCCCccccCCCccchHHHhH
Q 005044 57 SEVSAQVNVLNTTFSWLEADRAAAKRATHVLAELAK-NEEVVNWIVEGGAVPALVKHLQAPPTSEADRNLKPFEHEVEKG 135 (717)
Q Consensus 57 ~~i~~l~~~L~~~~~~~~~~~~~~~~a~~~L~~l~~-~~~~~~~~~~~g~i~~L~~lL~~~~~~~~~~~~~~~~~~v~~~ 135 (717)
..+|+.+.+|.+. ++.++..|+..+..++. +.+.+..+.+.|+|+.|+.+|.+... +|+.+
T Consensus 233 ~~lpe~i~mL~~q------~~~~qsnaaaylQHlcfgd~~ik~~vrqlggI~kLv~Ll~~~~~------------evq~~ 294 (717)
T KOG1048|consen 233 PTLPEVISMLMSQ------DPSVQSNAAAYLQHLCFGDNKIKSRVRQLGGIPKLVALLDHRND------------EVQRQ 294 (717)
T ss_pred cccHHHHHHHhcc------ChhhhHHHHHHHHHHHhhhHHHHHHHHHhccHHHHHHHhcCCcH------------HHHHH
Confidence 4567778888754 55678999999999999 77888889999999999999999888 99999
Q ss_pred HHHHHHHhc-C--ChhhHHHHHhCCChHHHHHHHhccccCCCccchhHHHHHHHHHHHHHhhcCchhhhHHHhcCCcHHH
Q 005044 136 SAFALGLLA-V--KPEHQQLIVDNGALSHLVNLLKRHMDSNCSRAVNSVIRRAADAITNLAHENSSIKTRVRMEGGIPPL 212 (717)
Q Consensus 136 a~~~L~~l~-~--~~~~~~~~~~~~~i~~L~~lL~~~~~~~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L 212 (717)
|+++|.||. . +.+++-.+.+.++++.++.+|+...+. ++++....+|+||+.. +..+..++ ...+..|
T Consensus 295 acgaLRNLvf~~~~~~NKlai~~~~Gv~~l~~~Lr~t~D~-------ev~e~iTg~LWNLSS~-D~lK~~ii-~~al~tL 365 (717)
T KOG1048|consen 295 ACGALRNLVFGKSTDSNKLAIKELNGVPTLVRLLRHTQDD-------EVRELITGILWNLSSN-DALKMLII-TSALSTL 365 (717)
T ss_pred HHHHHHhhhcccCCcccchhhhhcCChHHHHHHHHhhcch-------HHHHHHHHHHhcccch-hHHHHHHH-HHHHHHH
Confidence 999999999 3 335888999999999999999985543 9999999999999984 55554444 3445555
Q ss_pred HHhhcC--------C------CHHHHHHHHHHHHHhhccChhhHHHHHh-cCCHHHHHHHHc------CCCHHHHHHHHH
Q 005044 213 VELLEF--------T------DTKVQRAAAGALRTLAFKNDENKNQIVE-CNALPTLILMLR------SEDSAIHYEAVG 271 (717)
Q Consensus 213 ~~ll~~--------~------~~~v~~~a~~~L~~L~~~~~~~~~~~~~-~g~i~~L~~ll~------~~~~~v~~~a~~ 271 (717)
...+-. + +..+...+..+|+|++....+.++.+.+ .|+|..|+..++ ..+....++|+.
T Consensus 366 t~~vI~P~Sgw~~~~~~~~~~~~~vf~n~tgcLRNlSs~~~eaR~~mr~c~GLIdaL~~~iq~~i~~~~~d~K~VENcvC 445 (717)
T KOG1048|consen 366 TDNVIIPHSGWEEEPAPRKAEDSTVFRNVTGCLRNLSSAGQEAREQMRECDGLIDALLFSIQTAIQKSDLDSKSVENCVC 445 (717)
T ss_pred HHhhcccccccCCCCcccccccceeeehhhhhhccccchhHHHHHHHhhccchHHHHHHHHHHHHHhccccchhHHHHHH
Confidence 543311 1 2567889999999999888888888877 588999998876 245677889999
Q ss_pred HHHHhhcCCh-----HHHHHH------------------------------------------------HHcCChHHHHH
Q 005044 272 VIGNLVHSSP-----NIKKEV------------------------------------------------LAAGALQPVIG 298 (717)
Q Consensus 272 ~L~~l~~~~~-----~~~~~~------------------------------------------------~~~g~l~~L~~ 298 (717)
++.|++.... ...... ....++...+.
T Consensus 446 ilRNLSYrl~~Evp~~~~~~~~~~~~~~~~~~~~~~~gcf~~k~~k~~~~~~~~~~pe~~~~pkG~e~Lw~p~vVr~Yl~ 525 (717)
T KOG1048|consen 446 ILRNLSYRLEAEVPPKYRQVLANIARLPGVGPPAESVGCFGFKKRKSDDNCDDLPIPERATAPKGSEWLWHPSVVRPYLL 525 (717)
T ss_pred HHhhcCchhhhhcCHhhhhHhhcccccccCCCcccccccccchhhhchhcccccCCcccccCCCCceeeecHHHHHHHHH
Confidence 9999964322 000000 00112333333
Q ss_pred hhc-cCChHHHHHHHHHHHHHhcCChh----hHHHH-HhcCChHHHHHHhcCCCHHHHHHHHHHHHHhhcCCCCchhhHh
Q 005044 299 LLS-SCCSESQREAALLLGQFAATDSD----CKVHI-VQRGAVRPLIEMLQSPDVQLREMSAFALGRLAQDMHNQAGIAH 372 (717)
Q Consensus 299 ll~-~~~~~~~~~a~~~L~~l~~~~~~----~~~~l-~~~~~l~~L~~~l~~~~~~v~~~a~~~L~~l~~~~~~~~~l~~ 372 (717)
++. +.+..+.+.++.+|.|++..... .+..+ .+..+++.|+++++.+++.+...++.+|.||+.+..++..+.
T Consensus 526 Ll~~s~n~~TlEasaGaLQNltA~~~~~~~~~~~~v~~kekgl~~l~~ll~~~~~~vv~s~a~~LrNls~d~rnk~lig- 604 (717)
T KOG1048|consen 526 LLALSKNDNTLEASAGALQNLTAGLWTWSEYMRGAVFRKEKGLPPLVELLRNDDSDVVRSAAGALRNLSRDIRNKELIG- 604 (717)
T ss_pred HHHHhcchHHHHHhhhhHhhhhccCCcchhHHHhhhhhhccCccHHHHHHhcCCchHHHHHHHHHhhhccCchhhhhhh-
Confidence 443 34567888999999999866532 23333 678899999999999999999999999999999988877776
Q ss_pred cCChHHHHHhhcCC------ChhHHHHHHHHHHhcc-CCCcchHHHHHhcCcccc
Q 005044 373 NGGLVPLLKLLDSK------NGSLQHNAAFALYGLA-DNEDNVADFIRVGGVQKL 420 (717)
Q Consensus 373 ~~~l~~L~~ll~~~------~~~v~~~a~~~L~~l~-~~~~~~~~l~~~~~i~~L 420 (717)
.++++.|++.|... ++++...+|.+|.|+. .+..+...+.+.+++++|
T Consensus 605 k~a~~~lv~~Lp~~~~~~~~sedtv~~vc~tl~niv~~~~~nAkdl~~~~g~~kL 659 (717)
T KOG1048|consen 605 KYAIPDLVRCLPGSGPSTSLSEDTVRAVCHTLNNIVRKNVLNAKDLLEIKGIPKL 659 (717)
T ss_pred cchHHHHHHhCcCCCCCcCchHHHHHHHHHhHHHHHHHhHHHHHHHHhccChHHH
Confidence 78899999999643 3688899999999997 578888888888876653
No 24
>PF00651 BTB: BTB/POZ domain; InterPro: IPR013069 The BTB (for BR-C, ttk and bab) [] or POZ (for Pox virus and Zinc finger) [] domain is present near the N terminus of a fraction of zinc finger (IPR007087 from INTERPRO) proteins and in proteins that contain the IPR006652 from INTERPRO motif such as Kelch and a family of pox virus proteins. The BTB/POZ domain mediates homomeric dimerisation and in some instances heteromeric dimerisation []. The structure of the dimerised PLZF BTB/POZ domain has been solved and consists of a tightly intertwined homodimer. The central scaffolding of the protein is made up of a cluster of alpha-helices flanked by short beta-sheets at both the top and bottom of the molecule []. POZ domains from several zinc finger proteins have been shown to mediate transcriptional repression and to interact with components of histone deacetylase co-repressor complexes including N-CoR and SMRT [, , ]. The POZ or BTB domain is also known as BR-C/Ttk or ZiN.; GO: 0005515 protein binding; PDB: 3M5B_A 1R28_B 3LBZ_A 3E4U_F 3BIM_B 1R2B_A 1R29_A 2VPK_A 2YY9_B 3GA1_A ....
Probab=99.73 E-value=1.6e-17 Score=140.29 Aligned_cols=106 Identities=32% Similarity=0.661 Sum_probs=95.9
Q ss_pred HHhhcCCCCccEEEEEc-CeEeehhHHHHhhccHHHHHhhcCC-CCCCCCcceEcCCCCHHHHHHHHHHHhcCccccc-h
Q 005044 541 DQFVNNATLSDVTFLVE-GRRFYAHRICLLASSDAFRAMFDGG-YREKDARDIEIPNIRWEVFELMMRFIYTGSVDVT-L 617 (717)
Q Consensus 541 ~~~~~~~~~~Dv~~~~~-~~~~~~h~~il~~~s~~f~~~~~~~-~~e~~~~~i~l~~~~~~~~~~~l~~~Yt~~~~~~-~ 617 (717)
++++..+.++|+++.++ +..|++||.+|+++|+||+.+|.+. +.+.....+.++++++++|..+++|+|+|.+.++ .
T Consensus 2 ~~~~~~~~~~D~~i~v~d~~~~~vhk~iL~~~S~~F~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~Y~~~~~~~~~ 81 (111)
T PF00651_consen 2 NDLFNSNEFSDVTIRVGDGKTFYVHKNILAARSPYFRNLFEGSKFKESTVPEISLPDVSPEAFEAFLEYMYTGEIEINSD 81 (111)
T ss_dssp HHHHHHTTS--EEEEETTTEEEEE-HHHHHHHBHHHHHHHTTTTSTTSSEEEEEETTSCHHHHHHHHHHHHHSEEEEE-T
T ss_pred hHHHcCCCCCCEEEEECCCEEEeechhhhhccchhhhhcccccccccccccccccccccccccccccccccCCcccCCHH
Confidence 46788899999999999 8999999999999999999999988 5666666899999999999999999999999998 9
Q ss_pred hhHHHHHHHHHhhChHhHHHHHHHHHHhc
Q 005044 618 DIAQDLLRAADQYLLEGLKRLCEYTIAQD 646 (717)
Q Consensus 618 ~~~~~ll~~A~~~~~~~l~~~c~~~l~~~ 646 (717)
+++.+++.+|++|+++.|+..|..+|.++
T Consensus 82 ~~~~~ll~lA~~~~~~~L~~~~~~~l~~~ 110 (111)
T PF00651_consen 82 ENVEELLELADKLQIPELKKACEKFLQES 110 (111)
T ss_dssp TTHHHHHHHHHHTTBHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCcHHHHHHHHHHHHhC
Confidence 99999999999999999999999999864
No 25
>KOG2122 consensus Beta-catenin-binding protein APC, contains ARM repeats [Signal transduction mechanisms; Cytoskeleton]
Probab=99.73 E-value=2.2e-16 Score=170.99 Aligned_cols=325 Identities=22% Similarity=0.257 Sum_probs=253.0
Q ss_pred HHHHHHHHHHHHHHhhc-ChhhHHHHHhCCChHHHH----------HhhcCCCCCccccCCCccchHHH-hHHHHHHHHh
Q 005044 76 DRAAAKRATHVLAELAK-NEEVVNWIVEGGAVPALV----------KHLQAPPTSEADRNLKPFEHEVE-KGSAFALGLL 143 (717)
Q Consensus 76 ~~~~~~~a~~~L~~l~~-~~~~~~~~~~~g~i~~L~----------~lL~~~~~~~~~~~~~~~~~~v~-~~a~~~L~~l 143 (717)
+...+..|-.+|.|+.. .++....=.+..+++.|= .+++.... +..+.+.+=+ ..|+.+|.++
T Consensus 251 ~kear~~A~aALHNIVhSqPD~kr~RRE~kvL~lLeQIraYC~~~~~~lqar~~-----~~apa~~~H~lcaA~~~lMK~ 325 (2195)
T KOG2122|consen 251 DKEARKRASAALHNIVHSQPDEKRGRREKKVLHLLEQIRAYCETCWTWLQARGP-----AIAPASDEHQLCAALCTLMKL 325 (2195)
T ss_pred hHHHHHHHHHHHHHHhhcCcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHhcCC-----CCCCcccchhhHHHHHHHHHh
Confidence 56679999999999988 343333222222333332 22333222 1111111223 3788999999
Q ss_pred cCChhhHHHHHhCCChHHHHHHHhcccc----CCCccchhHHHHHHHHHHHHHhhcCchhhhHHH-hcCCcHHHHHhhcC
Q 005044 144 AVKPEHQQLIVDNGALSHLVNLLKRHMD----SNCSRAVNSVIRRAADAITNLAHENSSIKTRVR-MEGGIPPLVELLEF 218 (717)
Q Consensus 144 ~~~~~~~~~~~~~~~i~~L~~lL~~~~~----~~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~-~~~~i~~L~~ll~~ 218 (717)
+.++++|..+.+.|++..+.+++.-... .....-...+++++..+|.||.+++..++..+. ..|++..+|..|.+
T Consensus 326 SFDEEhR~aM~ELG~LqAIaeLl~vDh~mhgp~tnd~~~~aLRrYa~MALTNLTFGDv~NKa~LCs~rgfMeavVAQL~s 405 (2195)
T KOG2122|consen 326 SFDEEHRHAMNELGGLQAIAELLQVDHEMHGPETNDGECNALRRYAGMALTNLTFGDVANKATLCSQRGFMEAVVAQLIS 405 (2195)
T ss_pred hccHHHHHHHHHhhhHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHhhccccccccchhhhhhhhhHHHHHHHHHhc
Confidence 9999999999999999999998854321 111222338999999999999999988877666 45889999999998
Q ss_pred CCHHHHHHHHHHHHHhhccChhhHHH-HHhcCCHHHHHHH-HcCCCHHHHHHHHHHHHHhhcCChHHHHHHHH-cCChHH
Q 005044 219 TDTKVQRAAAGALRTLAFKNDENKNQ-IVECNALPTLILM-LRSEDSAIHYEAVGVIGNLVHSSPNIKKEVLA-AGALQP 295 (717)
Q Consensus 219 ~~~~v~~~a~~~L~~L~~~~~~~~~~-~~~~g~i~~L~~l-l~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~-~g~l~~ 295 (717)
...++....+.+|+||+..-+.+.+. +.+.|-+..|... ++..........+.+||||+.+..+++..|.. .|.+..
T Consensus 406 ~peeL~QV~AsvLRNLSWRAD~nmKkvLrE~GsVtaLa~~al~~~kEsTLKavLSALWNLSAHcteNKA~iCaVDGALaF 485 (2195)
T KOG2122|consen 406 APEELLQVYASVLRNLSWRADSNMKKVLRETGSVTALAACALRNKKESTLKAVLSALWNLSAHCTENKAEICAVDGALAF 485 (2195)
T ss_pred ChHHHHHHHHHHHHhccccccccHHHHHHhhhhHHHHHHHHHHhcccchHHHHHHHHhhhhhcccccchhhhcccchHHH
Confidence 88899999999999999866655444 5567888888775 45556678899999999999888888777776 689999
Q ss_pred HHHhhccC----ChHHHHHHHHHHHHHhc---CChhhHHHHHhcCChHHHHHHhcCCCHHHHHHHHHHHHHhhc-CCCCc
Q 005044 296 VIGLLSSC----CSESQREAALLLGQFAA---TDSDCKVHIVQRGAVRPLIEMLQSPDVQLREMSAFALGRLAQ-DMHNQ 367 (717)
Q Consensus 296 L~~ll~~~----~~~~~~~a~~~L~~l~~---~~~~~~~~l~~~~~l~~L~~~l~~~~~~v~~~a~~~L~~l~~-~~~~~ 367 (717)
|+.+|... .-.+.+.+..+|.|+++ .++++++.+.+.+++..|++.|++....+..++|++||||.. +++.+
T Consensus 486 LVg~LSY~~qs~tLaIIEsaGGILRNVSS~IAt~E~yRQILR~~NCLq~LLQ~LKS~SLTiVSNaCGTLWNLSAR~p~DQ 565 (2195)
T KOG2122|consen 486 LVGTLSYEGQSNTLAIIESAGGILRNVSSLIATCEDYRQILRRHNCLQTLLQHLKSHSLTIVSNACGTLWNLSARSPEDQ 565 (2195)
T ss_pred HHhhccccCCcchhhhhhcCccHHHHHHhHhhccchHHHHHHHhhHHHHHHHHhhhcceEEeecchhhhhhhhcCCHHHH
Confidence 99999865 34677888889988764 467888889999999999999999999999999999999985 66778
Q ss_pred hhhHhcCChHHHHHhhcCCChhHHHHHHHHHHhccCCC
Q 005044 368 AGIAHNGGLVPLLKLLDSKNGSLQHNAAFALYGLADNE 405 (717)
Q Consensus 368 ~~l~~~~~l~~L~~ll~~~~~~v~~~a~~~L~~l~~~~ 405 (717)
..+.+.|+++.|..++++++..+.+-++.+|.||....
T Consensus 566 q~LwD~gAv~mLrnLIhSKhkMIa~GSaaALrNLln~R 603 (2195)
T KOG2122|consen 566 QMLWDDGAVPMLRNLIHSKHKMIAMGSAAALRNLLNFR 603 (2195)
T ss_pred HHHHhcccHHHHHHHHhhhhhhhhhhHHHHHHHHhcCC
Confidence 88999999999999999999999999999999997654
No 26
>KOG4682 consensus Uncharacterized conserved protein, contains BTB/POZ domain [General function prediction only]
Probab=99.72 E-value=3.7e-17 Score=155.05 Aligned_cols=160 Identities=20% Similarity=0.377 Sum_probs=148.3
Q ss_pred cchHHhhcCCCCccEEEEEcCeEeehhHHHHhhccHHHHHhhcCCCCCCCCcceEc----CCCCHHHHHHHHHHHhcCcc
Q 005044 538 YLGDQFVNNATLSDVTFLVEGRRFYAHRICLLASSDAFRAMFDGGYREKDARDIEI----PNIRWEVFELMMRFIYTGSV 613 (717)
Q Consensus 538 ~l~~~~~~~~~~~Dv~~~~~~~~~~~h~~il~~~s~~f~~~~~~~~~e~~~~~i~l----~~~~~~~~~~~l~~~Yt~~~ 613 (717)
|....++.++..+||++.+-|..|+.|+.-|. +|+||++||+|-|+|+++..|.+ ++++..+|...+.-+|.+.+
T Consensus 58 yiyq~lf~q~enSDv~l~alg~eWrlHk~yL~-QS~yf~smf~Gtw~es~~~iIqleI~Dp~Id~~al~~a~gsLY~dEv 136 (488)
T KOG4682|consen 58 YIYQNLFLQGENSDVILEALGFEWRLHKPYLF-QSEYFKSMFSGTWKESSMNIIQLEIPDPNIDVVALQVAFGSLYRDEV 136 (488)
T ss_pred HHHHHHHhcCCCcceehhhccceeeeeeeeee-ccHHHHHHhccccChhhCceEEEEcCCCcccHHHHHHHHhhhhhhhe
Confidence 44577888999999999999999999999998 89999999999999999987776 46899999999999999999
Q ss_pred ccchhhHHHHHHHHHhhChHhHHHHHHHHHHhcCChhcHHHHHHHHHHcCcHHHHHHHHHHHHHhHHHhcCCchhhhchh
Q 005044 614 DVTLDIAQDLLRAADQYLLEGLKRLCEYTIAQDISLENVSSMYELSEAFHAISLRHTCILYIMEHFDKLSTRPGHSNLIQ 693 (717)
Q Consensus 614 ~~~~~~~~~ll~~A~~~~~~~l~~~c~~~l~~~i~~~n~~~~~~~a~~~~~~~L~~~~~~~i~~~~~~~~~~~~f~~l~~ 693 (717)
.|+.+.+..++.+|..++++++...|.+.+...++++|++..|..+..|+...+++.|.+|+..|+-.+....-|.+++.
T Consensus 137 eI~l~dv~gvlAaA~~lqldgl~qrC~evMie~lspkta~~yYea~ckYgle~vk~kc~ewl~~nl~~i~~~q~l~ei~~ 216 (488)
T KOG4682|consen 137 EIKLSDVVGVLAAACLLQLDGLIQRCGEVMIETLSPKTACGYYEAACKYGLESVKKKCLEWLLNNLMTIQNVQLLKEISI 216 (488)
T ss_pred eccHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhcChhhhhHhhhhhhhhhhHHHHHHHHHHHHHhhHhhhhHHHHHhcCH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999988777777766
Q ss_pred hcHHH
Q 005044 694 RIIPE 698 (717)
Q Consensus 694 ~~~~~ 698 (717)
+.+..
T Consensus 217 ~Lm~~ 221 (488)
T KOG4682|consen 217 NLMKQ 221 (488)
T ss_pred HHHHH
Confidence 64443
No 27
>PF10508 Proteasom_PSMB: Proteasome non-ATPase 26S subunit; InterPro: IPR019538 The 26S proteasome is an enzymatic complex that degrades ubiquitinated proteins in eukaryotic cells. 26S proteasome non-ATPase regulatory subunit 5 is one of a number of chaperones that are involved in the assembly of the proteasome. The chaperones dissociate before 26S proteasome formation is complete [].; GO: 0044183 protein binding involved in protein folding
Probab=99.70 E-value=5e-14 Score=150.11 Aligned_cols=393 Identities=19% Similarity=0.200 Sum_probs=285.2
Q ss_pred HHHHHHHHHHHhhcChhhHHHHHhCCChHHHHHhhcCCCCCccccCCCccchHHHhHHHHHHHHhc-CChhhHHHHHhCC
Q 005044 79 AAKRATHVLAELAKNEEVVNWIVEGGAVPALVKHLQAPPTSEADRNLKPFEHEVEKGSAFALGLLA-VKPEHQQLIVDNG 157 (717)
Q Consensus 79 ~~~~a~~~L~~l~~~~~~~~~~~~~g~i~~L~~lL~~~~~~~~~~~~~~~~~~v~~~a~~~L~~l~-~~~~~~~~~~~~~ 157 (717)
....++.+|..+......... ..+..+.|...|.++++ .||..+++.|+++. .+......+.+.+
T Consensus 54 ~v~~~~~iL~~~l~~~~~~~l--~~~~~~~L~~gL~h~~~------------~Vr~l~l~~l~~~~~~~~~~~~~~~~~~ 119 (503)
T PF10508_consen 54 QVELICDILKRLLSALSPDSL--LPQYQPFLQRGLTHPSP------------KVRRLALKQLGRIARHSEGAAQLLVDNE 119 (503)
T ss_pred HHHHHHHHHHHHHhccCHHHH--HHHHHHHHHHHhcCCCH------------HHHHHHHHHHHHHhcCCHHHHHHhcCcc
Confidence 356777788877763222221 34567889999998877 99999999999999 5555567778899
Q ss_pred ChHHHHHHHhccccCCCccchhHHHHHHHHHHHHHhhcCchhhhHHHhcCCcHHHHHhhcCCCHHHHHHHHHHHHHhhcc
Q 005044 158 ALSHLVNLLKRHMDSNCSRAVNSVIRRAADAITNLAHENSSIKTRVRMEGGIPPLVELLEFTDTKVQRAAAGALRTLAFK 237 (717)
Q Consensus 158 ~i~~L~~lL~~~~~~~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~L~~~ 237 (717)
.++.++..+.+.+. ++...|+.+|.+++.... ....++..+.++.|..++..++..+|..++.++.+++..
T Consensus 120 l~~~i~~~L~~~d~--------~Va~~A~~~L~~l~~~~~-~~~~l~~~~~~~~L~~l~~~~~~~vR~Rv~el~v~i~~~ 190 (503)
T PF10508_consen 120 LLPLIIQCLRDPDL--------SVAKAAIKALKKLASHPE-GLEQLFDSNLLSKLKSLMSQSSDIVRCRVYELLVEIASH 190 (503)
T ss_pred HHHHHHHHHcCCcH--------HHHHHHHHHHHHHhCCch-hHHHHhCcchHHHHHHHHhccCHHHHHHHHHHHHHHHhc
Confidence 99999999988776 899999999999998544 444677778899999999888889999999999999998
Q ss_pred ChhhHHHHHhcCCHHHHHHHHcCCCHHHHHHHHHHHHHhhcCChHHHHHHHHcCChHHHHHhhccCChHH-----H-HHH
Q 005044 238 NDENKNQIVECNALPTLILMLRSEDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLSSCCSES-----Q-REA 311 (717)
Q Consensus 238 ~~~~~~~~~~~g~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~l~~L~~ll~~~~~~~-----~-~~a 311 (717)
+++....+.+.|+++.++..++++|.-++..++.+|..++. .+...+.+.+.|+++.|..++.+...+. . ...
T Consensus 191 S~~~~~~~~~sgll~~ll~eL~~dDiLvqlnalell~~La~-~~~g~~yL~~~gi~~~L~~~l~~~~~dp~~~~~~l~g~ 269 (503)
T PF10508_consen 191 SPEAAEAVVNSGLLDLLLKELDSDDILVQLNALELLSELAE-TPHGLQYLEQQGIFDKLSNLLQDSEEDPRLSSLLLPGR 269 (503)
T ss_pred CHHHHHHHHhccHHHHHHHHhcCccHHHHHHHHHHHHHHHc-ChhHHHHHHhCCHHHHHHHHHhccccCCcccchhhhhH
Confidence 99999999999999999999999999999999999999998 5666788899999999999997643222 1 122
Q ss_pred HHHHHHHhcCChhhHHHHHhcCChHHHHHHhcCCCHHHHHHHHHHHHHhhcCCCCchhh-HhcC-ChHH----HHHhhcC
Q 005044 312 ALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQSPDVQLREMSAFALGRLAQDMHNQAGI-AHNG-GLVP----LLKLLDS 385 (717)
Q Consensus 312 ~~~L~~l~~~~~~~~~~l~~~~~l~~L~~~l~~~~~~v~~~a~~~L~~l~~~~~~~~~l-~~~~-~l~~----L~~ll~~ 385 (717)
....++++...+..... .-..++..+.+++.+.|+..+..|..+++.++...+++..+ ...+ .+.. +.....+
T Consensus 270 ~~f~g~la~~~~~~v~~-~~p~~~~~l~~~~~s~d~~~~~~A~dtlg~igst~~G~~~L~~~~~~~~~~~l~~~~~~~~~ 348 (503)
T PF10508_consen 270 MKFFGNLARVSPQEVLE-LYPAFLERLFSMLESQDPTIREVAFDTLGQIGSTVEGKQLLLQKQGPAMKHVLKAIGDAIKS 348 (503)
T ss_pred HHHHHHHHhcChHHHHH-HHHHHHHHHHHHhCCCChhHHHHHHHHHHHHhCCHHHHHHHHhhcchHHHHHHHHHHHHhcC
Confidence 34666776533322111 11345566777778899999999999999999877776666 3332 3333 3344466
Q ss_pred CChhHHHHHHHHHHhccCCCc--chHHHHHhcCccccccchhHHhhhHHHHHHHHHHHHHHhhhchHH-HHHHHHhhcch
Q 005044 386 KNGSLQHNAAFALYGLADNED--NVADFIRVGGVQKLQDGEFIVQATKDCVAKTLKRLEEKIHGRVLN-HLLYLMRVAEK 462 (717)
Q Consensus 386 ~~~~v~~~a~~~L~~l~~~~~--~~~~l~~~~~i~~L~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~-~L~~ll~~~~~ 462 (717)
+..+++..++.++.++..... ....+. .....+......+... .+..+++.+-|
T Consensus 349 ~~~~lk~r~l~al~~il~~~~~~~~~~i~-----------------------~~~~~w~~~~~~~~~~~~l~~~~~qPF~ 405 (503)
T PF10508_consen 349 GSTELKLRALHALASILTSGTDRQDNDIL-----------------------SITESWYESLSGSPLSNLLMSLLKQPFP 405 (503)
T ss_pred CchHHHHHHHHHHHHHHhcCCCCchHHHH-----------------------HHHHHHHHHhcCCchHHHHHHHhcCCch
Confidence 778899999999999954322 111111 1122222223333344 78888988999
Q ss_pred hHHHHHHHHHHhccCCCCCceeeecC-CCHHHHHHHhcCCCchhhhhhHHHHHHhhhc
Q 005044 463 GVQRRVALALAHLCSPDDQRTIFIDG-GGLELLLGLLGSTNPKQQLDGAVALFKLANK 519 (717)
Q Consensus 463 ~v~~~a~~aL~~l~~~~~~~~~~~~~-~~l~~L~~ll~~~~~~v~~~a~~~l~~L~~~ 519 (717)
++|..+.+.|..++..+-+.+.+... |.+..|+.--...+.+.++.=-.++..|+..
T Consensus 406 elr~a~~~~l~~l~~~~Wg~~~i~~~~gfie~lldr~~E~~K~~ke~K~~ii~~l~~~ 463 (503)
T PF10508_consen 406 ELRCAAYRLLQALAAQPWGQREICSSPGFIEYLLDRSTETTKEGKEAKYDIIKALAKS 463 (503)
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHhCccHHhhhcCCCCCCCHHHHHHHHHHHHHHHhc
Confidence 99999999999999988755544444 4444444433445555555444445555543
No 28
>PF10508 Proteasom_PSMB: Proteasome non-ATPase 26S subunit; InterPro: IPR019538 The 26S proteasome is an enzymatic complex that degrades ubiquitinated proteins in eukaryotic cells. 26S proteasome non-ATPase regulatory subunit 5 is one of a number of chaperones that are involved in the assembly of the proteasome. The chaperones dissociate before 26S proteasome formation is complete [].; GO: 0044183 protein binding involved in protein folding
Probab=99.67 E-value=4.9e-14 Score=150.20 Aligned_cols=367 Identities=20% Similarity=0.175 Sum_probs=279.9
Q ss_pred HHHHHhhcCCCCCccccCCCccchHHHhHHHHHHHHhcCChhhHHHHHhCCChHHHHHHHhccccCCCccchhHHHHHHH
Q 005044 107 PALVKHLQAPPTSEADRNLKPFEHEVEKGSAFALGLLAVKPEHQQLIVDNGALSHLVNLLKRHMDSNCSRAVNSVIRRAA 186 (717)
Q Consensus 107 ~~L~~lL~~~~~~~~~~~~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~i~~L~~lL~~~~~~~~~~~~~~~~~~a~ 186 (717)
+.++..|+..+. +....++.+|..+......... ..+..+.+...|.+.++ .++..++
T Consensus 41 ~~lf~~L~~~~~------------e~v~~~~~iL~~~l~~~~~~~l--~~~~~~~L~~gL~h~~~--------~Vr~l~l 98 (503)
T PF10508_consen 41 PVLFDCLNTSNR------------EQVELICDILKRLLSALSPDSL--LPQYQPFLQRGLTHPSP--------KVRRLAL 98 (503)
T ss_pred HHHHHHHhhcCh------------HHHHHHHHHHHHHHhccCHHHH--HHHHHHHHHHHhcCCCH--------HHHHHHH
Confidence 347777876655 6667888888888844333322 44567888888888776 9999999
Q ss_pred HHHHHHhhcCchhhhHHHhcCCcHHHHHhhcCCCHHHHHHHHHHHHHhhccChhhHHHHHhcCCHHHHHHHHcCCCHHHH
Q 005044 187 DAITNLAHENSSIKTRVRMEGGIPPLVELLEFTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSEDSAIH 266 (717)
Q Consensus 187 ~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~v~ 266 (717)
+.+.++..++......+...+.++.++.++.+++..+...|..+|..++. .+.....+.+.+++..|..++..+++.+|
T Consensus 99 ~~l~~~~~~~~~~~~~~~~~~l~~~i~~~L~~~d~~Va~~A~~~L~~l~~-~~~~~~~l~~~~~~~~L~~l~~~~~~~vR 177 (503)
T PF10508_consen 99 KQLGRIARHSEGAAQLLVDNELLPLIIQCLRDPDLSVAKAAIKALKKLAS-HPEGLEQLFDSNLLSKLKSLMSQSSDIVR 177 (503)
T ss_pred HHHHHHhcCCHHHHHHhcCccHHHHHHHHHcCCcHHHHHHHHHHHHHHhC-CchhHHHHhCcchHHHHHHHHhccCHHHH
Confidence 99999998777666777788999999999999999999999999999997 55566677788889999999988888999
Q ss_pred HHHHHHHHHhhcCChHHHHHHHHcCChHHHHHhhccCChHHHHHHHHHHHHHhcCChhhHHHHHhcCChHHHHHHhcCC-
Q 005044 267 YEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLSSCCSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQSP- 345 (717)
Q Consensus 267 ~~a~~~L~~l~~~~~~~~~~~~~~g~l~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~l~~~~~l~~L~~~l~~~- 345 (717)
..+..++.+++..+++....+...|+++.++..+.+++.-++..++.++..++. .+.....+.+.|+++.|..++.+.
T Consensus 178 ~Rv~el~v~i~~~S~~~~~~~~~sgll~~ll~eL~~dDiLvqlnalell~~La~-~~~g~~yL~~~gi~~~L~~~l~~~~ 256 (503)
T PF10508_consen 178 CRVYELLVEIASHSPEAAEAVVNSGLLDLLLKELDSDDILVQLNALELLSELAE-TPHGLQYLEQQGIFDKLSNLLQDSE 256 (503)
T ss_pred HHHHHHHHHHHhcCHHHHHHHHhccHHHHHHHHhcCccHHHHHHHHHHHHHHHc-ChhHHHHHHhCCHHHHHHHHHhccc
Confidence 999999999999999998999999999999999999989999999999999987 677778889999999999999652
Q ss_pred -CH---HHH-HHHHHHHHHhhcCCCCchhhHhcCChHHHHHhhcCCChhHHHHHHHHHHhccCCCcchHHH-HHhcCccc
Q 005044 346 -DV---QLR-EMSAFALGRLAQDMHNQAGIAHNGGLVPLLKLLDSKNGSLQHNAAFALYGLADNEDNVADF-IRVGGVQK 419 (717)
Q Consensus 346 -~~---~v~-~~a~~~L~~l~~~~~~~~~l~~~~~l~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~l-~~~~~i~~ 419 (717)
++ .+. -......++++...+....-.-..++..+.+++.+.+...+..|..+++.++...+++..+ ...+.
T Consensus 257 ~dp~~~~~~l~g~~~f~g~la~~~~~~v~~~~p~~~~~l~~~~~s~d~~~~~~A~dtlg~igst~~G~~~L~~~~~~--- 333 (503)
T PF10508_consen 257 EDPRLSSLLLPGRMKFFGNLARVSPQEVLELYPAFLERLFSMLESQDPTIREVAFDTLGQIGSTVEGKQLLLQKQGP--- 333 (503)
T ss_pred cCCcccchhhhhHHHHHHHHHhcChHHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHhCCHHHHHHHHhhcch---
Confidence 33 112 2233567777775222211111234555677778899999999999999999888777666 32220
Q ss_pred cccchhHHhhhHHHHHHHHHHHHHHhhhchHHHHHHHHhhcchhHHHHHHHHHHhccCCCCC--ce----------eeec
Q 005044 420 LQDGEFIVQATKDCVAKTLKRLEEKIHGRVLNHLLYLMRVAEKGVQRRVALALAHLCSPDDQ--RT----------IFID 487 (717)
Q Consensus 420 L~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~--~~----------~~~~ 487 (717)
.-..++..+.....++..++|..++.+|.++...... .. ....
T Consensus 334 -------------------------~~~~~l~~~~~~~~~~~~~lk~r~l~al~~il~~~~~~~~~~i~~~~~~w~~~~~ 388 (503)
T PF10508_consen 334 -------------------------AMKHVLKAIGDAIKSGSTELKLRALHALASILTSGTDRQDNDILSITESWYESLS 388 (503)
T ss_pred -------------------------HHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHhc
Confidence 0112455555666677788999999999999432221 11 1112
Q ss_pred CCCHH-HHHHHhcCCCchhhhhhHHHHHHhhhcccccCc
Q 005044 488 GGGLE-LLLGLLGSTNPKQQLDGAVALFKLANKATTLSS 525 (717)
Q Consensus 488 ~~~l~-~L~~ll~~~~~~v~~~a~~~l~~L~~~~~~~~~ 525 (717)
.+-.. .+..+++.+=+++|..+...+..|+.++|+...
T Consensus 389 ~~~~~~~l~~~~~qPF~elr~a~~~~l~~l~~~~Wg~~~ 427 (503)
T PF10508_consen 389 GSPLSNLLMSLLKQPFPELRCAAYRLLQALAAQPWGQRE 427 (503)
T ss_pred CCchHHHHHHHhcCCchHHHHHHHHHHHHHhcCHHHHHH
Confidence 23333 677788777799999999999999999887643
No 29
>KOG4500 consensus Rho/Rac GTPase guanine nucleotide exchange factor smgGDS/Vimar [Signal transduction mechanisms]
Probab=99.66 E-value=3.8e-14 Score=136.32 Aligned_cols=402 Identities=16% Similarity=0.117 Sum_probs=288.8
Q ss_pred HHHhhhhhccccchHHHHHHHHHHHHHHHHhhc-ChhhHHHHHhCCChHHHHHhhcCCCCCccccCCCccchHHHhHHHH
Q 005044 60 SAQVNVLNTTFSWLEADRAAAKRATHVLAELAK-NEEVVNWIVEGGAVPALVKHLQAPPTSEADRNLKPFEHEVEKGSAF 138 (717)
Q Consensus 60 ~~l~~~L~~~~~~~~~~~~~~~~a~~~L~~l~~-~~~~~~~~~~~g~i~~L~~lL~~~~~~~~~~~~~~~~~~v~~~a~~ 138 (717)
..+++.|+...++. +..+-.+..++|+|+|. +.+.|..+.+.||-..++.+|+..-.. ..|-..+.-.-+..
T Consensus 86 a~~le~Lrq~psS~--d~ev~~Q~~RaLgNiCydn~E~R~a~~~lgGaqivid~L~~~cs~-----d~~ane~~~~v~~g 158 (604)
T KOG4500|consen 86 AEALELLRQTPSSP--DTEVHEQCFRALGNICYDNNENRAAFFNLGGAQIVIDVLKPYCSK-----DNPANEEYSAVAFG 158 (604)
T ss_pred HHHHHHHHhCCCCC--cccHHHHHHHHHhhhhccCchhHHHHHhcCCceehHhhhcccccc-----CCccHHHHHHHHHH
Confidence 55677777665554 45578999999999999 689999999999977777777643221 01122366677888
Q ss_pred HHHHhc-CChhhHHHHHhCCChHHHHHHHhccccCCCccchhHHHHHHHHHHHHHhhc-CchhhhHHHhcCCcHHHHHhh
Q 005044 139 ALGLLA-VKPEHQQLIVDNGALSHLVNLLKRHMDSNCSRAVNSVIRRAADAITNLAHE-NSSIKTRVRMEGGIPPLVELL 216 (717)
Q Consensus 139 ~L~~l~-~~~~~~~~~~~~~~i~~L~~lL~~~~~~~~~~~~~~~~~~a~~~L~~l~~~-~~~~~~~~~~~~~i~~L~~ll 216 (717)
.|.|-. ++.+.+.++.+.|+++.|...+.-.-... +..+.......|+..- .+.......+......+++++
T Consensus 159 ~l~Ny~l~~~~l~aq~~~~gVl~tL~~~~~I~~qNa------a~~e~ll~~f~nlls~~~e~~~~~~~d~sl~~~l~~ll 232 (604)
T KOG4500|consen 159 VLHNYILDSRELRAQVADAGVLNTLAITYWIDWQNA------ALTEKLLAPFFNLLSFVCEMLYPFCKDCSLVFMLLQLL 232 (604)
T ss_pred HHHHhhCCcHHHHHHHHhcccHHHHHHHhhcccccH------HHHHHHHhccccHHHHHHHhhhhhhccchHHHHHHHHH
Confidence 888888 99999999999999999998875432211 3334444444444331 222233444555666777877
Q ss_pred cC-CCHHHHHHHHHHHHHhhccChhhHHHHHhcCCHHHHHHHHcC-CC-------HHHHHHHHHHHHHhhcCChHHHHHH
Q 005044 217 EF-TDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRS-ED-------SAIHYEAVGVIGNLVHSSPNIKKEV 287 (717)
Q Consensus 217 ~~-~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~g~i~~L~~ll~~-~~-------~~v~~~a~~~L~~l~~~~~~~~~~~ 287 (717)
.+ .++.+++.....|...+. ++..+-.+++.|.+..++.+++. .+ -.....++....-+..+++.. +.+
T Consensus 233 ~~~v~~d~~eM~feila~~ae-nd~Vkl~la~~gl~e~~~~lv~~~k~~t~k~d~~~l~k~~~el~vllltGDeSM-q~L 310 (604)
T KOG4500|consen 233 PSMVREDIDEMIFEILAKAAE-NDLVKLSLAQNGLLEDSIDLVRNMKDFTKKTDMLNLFKRIAELDVLLLTGDESM-QKL 310 (604)
T ss_pred HHhhccchhhHHHHHHHHHhc-CcceeeehhhcchHHHHHHHHHhcccccchHHHHHHHHhhhhHhhhhhcCchHH-HHH
Confidence 54 567788888999999986 77888889999999999999875 11 122334455555555565554 445
Q ss_pred HHcC-ChHHHHHhhccCChHHHHHHHHHHHHHhcCChhhHHHHHhcCChHHHHHHhcC-----CCHHHHHHHHHHHHHhh
Q 005044 288 LAAG-ALQPVIGLLSSCCSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQS-----PDVQLREMSAFALGRLA 361 (717)
Q Consensus 288 ~~~g-~l~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~l~~~~~l~~L~~~l~~-----~~~~v~~~a~~~L~~l~ 361 (717)
...+ +++.+..++.+++......+..+++|++.. ++....+++.+++..|++.+.. ++..++.+++.+|.|+.
T Consensus 311 ~~~p~~l~~~~sw~~S~d~~l~t~g~LaigNfaR~-D~~ci~~v~~~~~nkL~~~l~~~~~vdgnV~~qhA~lsALRnl~ 389 (604)
T KOG4500|consen 311 HADPQFLDFLESWFRSDDSNLITMGSLAIGNFARR-DDICIQLVQKDFLNKLISCLMQEKDVDGNVERQHACLSALRNLM 389 (604)
T ss_pred hcCcHHHHHHHHHhcCCchhHHHHHHHHHHhhhcc-chHHHHHHHHHHHHHHHHHHHHhcCCCccchhHHHHHHHHHhcc
Confidence 5544 899999999999999999999999999865 5566678899999999999843 57788999999999999
Q ss_pred cCCCCchhhHhcCChHHHHHhhcCCChhHHHHHHHHHHhccCCCcch-HHHHH-hcCccccccchhH------HhhhHHH
Q 005044 362 QDMHNQAGIAHNGGLVPLLKLLDSKNGSLQHNAAFALYGLADNEDNV-ADFIR-VGGVQKLQDGEFI------VQATKDC 433 (717)
Q Consensus 362 ~~~~~~~~l~~~~~l~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~-~~l~~-~~~i~~L~~~~~~------~~~~~~~ 433 (717)
-...++..+...|..+.++..++...+.+...-..+++-+....+.. .++.+ ...++.|++++.. .....+.
T Consensus 390 IPv~nka~~~~aGvteaIL~~lk~~~ppv~fkllgTlrM~~d~qe~~a~eL~kn~~l~ekLv~Wsks~D~aGv~gESnRl 469 (604)
T KOG4500|consen 390 IPVSNKAHFAPAGVTEAILLQLKLASPPVTFKLLGTLRMIRDSQEYIACELAKNPELFEKLVDWSKSPDFAGVAGESNRL 469 (604)
T ss_pred ccCCchhhccccchHHHHHHHHHhcCCcchHHHHHHHHHHHhchHHHHHHHhcCHHHHHHHHHhhhCCccchhhhhhhHH
Confidence 99899999999999999999999888888888888887776555422 12222 1234555544332 1122333
Q ss_pred HHHHHHH--H----HHHhhhchHHHHHHHHhhcchhHHHHHHHHHHhccC
Q 005044 434 VAKTLKR--L----EEKIHGRVLNHLLYLMRVAEKGVQRRVALALAHLCS 477 (717)
Q Consensus 434 ~~~~~~~--l----~~~~~~~~~~~L~~ll~~~~~~v~~~a~~aL~~l~~ 477 (717)
+...+++ . ..+..+|.+..++.++...+...+.+|+.+|+.+..
T Consensus 470 l~~lIkHs~~kdv~~tvpksg~ik~~Vsm~t~~hi~mqnEalVal~~~~~ 519 (604)
T KOG4500|consen 470 LLGLIKHSKYKDVILTVPKSGGIKEKVSMFTKNHINMQNEALVALLSTES 519 (604)
T ss_pred HHHHHHhhHhhhhHhhccccccHHHHHHHHHHhhHHHhHHHHHHHHHHHH
Confidence 4444443 2 234578889999999999999999999999988753
No 30
>smart00225 BTB Broad-Complex, Tramtrack and Bric a brac. Domain in Broad-Complex, Tramtrack and Bric a brac. Also known as POZ (poxvirus and zinc finger) domain. Known to be a protein-protein interaction motif found at the N-termini of several C2H2-type transcription factors as well as Shaw-type potassium channels. Known structure reveals a tightly intertwined dimer formed via interactions between N-terminal strand and helix structures. However in a subset of BTB/POZ domains, these two secondary structures appear to be missing. Be aware SMART predicts BTB/POZ domains without the beta1- and alpha1-secondary structures.
Probab=99.60 E-value=5.1e-15 Score=119.81 Aligned_cols=90 Identities=37% Similarity=0.692 Sum_probs=85.6
Q ss_pred cEEEEEcCeEeehhHHHHhhccHHHHHhhcCCCCCCCCcceEcCCCCHHHHHHHHHHHhcCccccchhhHHHHHHHHHhh
Q 005044 551 DVTFLVEGRRFYAHRICLLASSDAFRAMFDGGYREKDARDIEIPNIRWEVFELMMRFIYTGSVDVTLDIAQDLLRAADQY 630 (717)
Q Consensus 551 Dv~~~~~~~~~~~h~~il~~~s~~f~~~~~~~~~e~~~~~i~l~~~~~~~~~~~l~~~Yt~~~~~~~~~~~~ll~~A~~~ 630 (717)
|+.+.+++..|++||.+|+++|+||+.||.+++.+.....+.++++++++|+.+++|+|++.+.++..++.+++.+|++|
T Consensus 1 dv~i~v~~~~~~~h~~iL~~~s~~f~~~~~~~~~~~~~~~i~l~~~~~~~f~~~l~~ly~~~~~~~~~~~~~l~~~a~~~ 80 (90)
T smart00225 1 DVTLVVGGKKFKAHKAVLAACSPYFKALFSGDFKESKKSEIYLDDVSPEDFRALLEFLYTGKLDLPEENVEELLELADYL 80 (90)
T ss_pred CeEEEECCEEEehHHHHHhhcCHHHHHHHcCCCccCCCCEEEecCCCHHHHHHHHHeecCceeecCHHHHHHHHHHHHHH
Confidence 68899999999999999999999999999998888778899999999999999999999999999999999999999999
Q ss_pred ChHhHHHHHH
Q 005044 631 LLEGLKRLCE 640 (717)
Q Consensus 631 ~~~~l~~~c~ 640 (717)
+++.|+..|+
T Consensus 81 ~~~~l~~~c~ 90 (90)
T smart00225 81 QIPGLVELCE 90 (90)
T ss_pred CcHHHHhhhC
Confidence 9999999884
No 31
>KOG0783 consensus Uncharacterized conserved protein, contains ankyrin and BTB/POZ domains [Function unknown]
Probab=99.59 E-value=2e-15 Score=155.33 Aligned_cols=162 Identities=21% Similarity=0.396 Sum_probs=141.8
Q ss_pred CCCccEEEEE-cCeEeehhHHHHhhccHHHHHhhcCCCCCCCCcceEcCCCCHHHHHHHHHHHhc-Cccc-----cchhh
Q 005044 547 ATLSDVTFLV-EGRRFYAHRICLLASSDAFRAMFDGGYREKDARDIEIPNIRWEVFELMMRFIYT-GSVD-----VTLDI 619 (717)
Q Consensus 547 ~~~~Dv~~~~-~~~~~~~h~~il~~~s~~f~~~~~~~~~e~~~~~i~l~~~~~~~~~~~l~~~Yt-~~~~-----~~~~~ 619 (717)
....|+.+.. +|+.++||+++|++|.+||..||..-|.|+..-.+....++.+.+..+|+|+|+ +... -..+.
T Consensus 708 ~e~~d~~i~~KDGkvl~aHkc~L~aRlEYF~smf~~~w~E~sS~t~~~~p~~~e~m~ivLdylYs~d~~~~~k~~~~~dF 787 (1267)
T KOG0783|consen 708 EETMDTVIKLKDGKVLKAHKCFLSARLEYFSSMFQFVWMESSSITVNLSPLTVEHMSIVLDYLYSDDKVELFKDLKESDF 787 (1267)
T ss_pred ccceeEEEEecCCcCcccceeEeeeHHHHHHHHHHHHHhhhccceeecCcchHHHHHHHHHHHHccchHHHHhccchhhh
Confidence 3445666666 567799999999999999999999999998776666666779999999999995 4443 24556
Q ss_pred HHHHHHHHHhhChHhHHHHHHHHHHhcCChhcHHHHHHHHHHcCcHHHHHHHHHHHHHhHHHhcCCchhhhchhhcHHHH
Q 005044 620 AQDLLRAADQYLLEGLKRLCEYTIAQDISLENVSSMYELSEAFHAISLRHTCILYIMEHFDKLSTRPGHSNLIQRIIPEI 699 (717)
Q Consensus 620 ~~~ll~~A~~~~~~~l~~~c~~~l~~~i~~~n~~~~~~~a~~~~~~~L~~~~~~~i~~~~~~~~~~~~f~~l~~~~~~~l 699 (717)
+.+++.+||.|.+..|+..|+..|.+.++..+|-.++.+|..|++..|+..|++||..|+..++......+.+-..+..+
T Consensus 788 ~~~il~iaDqlli~~Lk~Ice~~ll~kl~lk~~~~llefaamY~ak~L~~~C~dfic~N~~~~Learsi~~~dg~~LK~l 867 (1267)
T KOG0783|consen 788 MFEILSIADQLLILELKSICEQSLLRKLNLKTLPTLLEFAAMYHAKELYSRCIDFICHNIEFFLEARSISEWDGFHLKKL 867 (1267)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHhHhcccchHHHHHHHHHhhHHHHHHHHHHHHHHhHHHHHHhccHhhhcchHHHHH
Confidence 88999999999999999999999999999999999999999999999999999999999999998877878888899999
Q ss_pred HHHHHhhcC
Q 005044 700 HNYFAKALT 708 (717)
Q Consensus 700 ~~~l~~~~~ 708 (717)
.++.++.+.
T Consensus 868 ~~~yrkm~~ 876 (1267)
T KOG0783|consen 868 AQRYRKMLS 876 (1267)
T ss_pred HHHHHHHhh
Confidence 999988886
No 32
>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional
Probab=99.57 E-value=8.8e-13 Score=151.08 Aligned_cols=276 Identities=22% Similarity=0.190 Sum_probs=208.5
Q ss_pred CCChHHHHHhhcCCCCCccccCCCccchHHHhHHHHHHHHhcCChhhHHHHHhCCChHHHHHHHhccccCCCccchhHHH
Q 005044 103 GGAVPALVKHLQAPPTSEADRNLKPFEHEVEKGSAFALGLLAVKPEHQQLIVDNGALSHLVNLLKRHMDSNCSRAVNSVI 182 (717)
Q Consensus 103 ~g~i~~L~~lL~~~~~~~~~~~~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~i~~L~~lL~~~~~~~~~~~~~~~~ 182 (717)
...++.|+..|.++++ .||..|+..|+.+.. .+.++.|...|++.+. .++
T Consensus 620 ~~~~~~L~~~L~D~d~------------~VR~~Av~~L~~~~~----------~~~~~~L~~aL~D~d~--------~VR 669 (897)
T PRK13800 620 APSVAELAPYLADPDP------------GVRRTAVAVLTETTP----------PGFGPALVAALGDGAA--------AVR 669 (897)
T ss_pred chhHHHHHHHhcCCCH------------HHHHHHHHHHhhhcc----------hhHHHHHHHHHcCCCH--------HHH
Confidence 4567788888877666 899999999988752 2346788888876665 888
Q ss_pred HHHHHHHHHHhhcCchhhhHHHhcCCcHHHHHhhcCCCHHHHHHHHHHHHHhhccChhhHHHHHhcCCHHHHHHHHcCCC
Q 005044 183 RRAADAITNLAHENSSIKTRVRMEGGIPPLVELLEFTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSED 262 (717)
Q Consensus 183 ~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~g~i~~L~~ll~~~~ 262 (717)
..|+..|..+....+ ..+.|...|.++++.+|..++.+|..+... -...++..|.+++
T Consensus 670 ~~Aa~aL~~l~~~~~----------~~~~L~~~L~~~d~~VR~~A~~aL~~~~~~------------~~~~l~~~L~D~d 727 (897)
T PRK13800 670 RAAAEGLRELVEVLP----------PAPALRDHLGSPDPVVRAAALDVLRALRAG------------DAALFAAALGDPD 727 (897)
T ss_pred HHHHHHHHHHHhccC----------chHHHHHHhcCCCHHHHHHHHHHHHhhccC------------CHHHHHHHhcCCC
Confidence 888888877743111 124677778888889999888888876531 1345677888899
Q ss_pred HHHHHHHHHHHHHhhcCChHHHHHHHHcCChHHHHHhhccCChHHHHHHHHHHHHHhcCChhhHHHHHhcCChHHHHHHh
Q 005044 263 SAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLSSCCSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEML 342 (717)
Q Consensus 263 ~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~l~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~l~~~~~l~~L~~~l 342 (717)
+.||..|+.+|..+- ..+.|..++.++++.+|..++.+|..+.... ...++.|..++
T Consensus 728 ~~VR~~Av~aL~~~~--------------~~~~l~~~l~D~~~~VR~~aa~aL~~~~~~~---------~~~~~~L~~ll 784 (897)
T PRK13800 728 HRVRIEAVRALVSVD--------------DVESVAGAATDENREVRIAVAKGLATLGAGG---------APAGDAVRALT 784 (897)
T ss_pred HHHHHHHHHHHhccc--------------CcHHHHHHhcCCCHHHHHHHHHHHHHhcccc---------chhHHHHHHHh
Confidence 999999999988761 1234667888888999999999988885321 12367788888
Q ss_pred cCCCHHHHHHHHHHHHHhhcCCCCchhhHhcCChHHHHHhhcCCChhHHHHHHHHHHhccCCCcchHHHHHhcCcccccc
Q 005044 343 QSPDVQLREMSAFALGRLAQDMHNQAGIAHNGGLVPLLKLLDSKNGSLQHNAAFALYGLADNEDNVADFIRVGGVQKLQD 422 (717)
Q Consensus 343 ~~~~~~v~~~a~~~L~~l~~~~~~~~~l~~~~~l~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~l~~~~~i~~L~~ 422 (717)
+++++.+|..|+.+|.++.... .....++..+.+.++.||..|+.+|..+....
T Consensus 785 ~D~d~~VR~aA~~aLg~~g~~~---------~~~~~l~~aL~d~d~~VR~~Aa~aL~~l~~~~----------------- 838 (897)
T PRK13800 785 GDPDPLVRAAALAALAELGCPP---------DDVAAATAALRASAWQVRQGAARALAGAAADV----------------- 838 (897)
T ss_pred cCCCHHHHHHHHHHHHhcCCcc---------hhHHHHHHHhcCCChHHHHHHHHHHHhccccc-----------------
Confidence 8888999999988888874321 12355778888888899999999998765221
Q ss_pred chhHHhhhHHHHHHHHHHHHHHhhhchHHHHHHHHhhcchhHHHHHHHHHHhccCCCCCceeeecCCCHHHHHHHhcCCC
Q 005044 423 GEFIVQATKDCVAKTLKRLEEKIHGRVLNHLLYLMRVAEKGVQRRVALALAHLCSPDDQRTIFIDGGGLELLLGLLGSTN 502 (717)
Q Consensus 423 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~~~~~~l~~L~~ll~~~~ 502 (717)
.++.|+.+|.++++.||..|+++|+.+.. .....+.|...+++.+
T Consensus 839 --------------------------a~~~L~~~L~D~~~~VR~~A~~aL~~~~~---------~~~a~~~L~~al~D~d 883 (897)
T PRK13800 839 --------------------------AVPALVEALTDPHLDVRKAAVLALTRWPG---------DPAARDALTTALTDSD 883 (897)
T ss_pred --------------------------hHHHHHHHhcCCCHHHHHHHHHHHhccCC---------CHHHHHHHHHHHhCCC
Confidence 46779999999999999999999998721 2245788999999999
Q ss_pred chhhhhhHHHHH
Q 005044 503 PKQQLDGAVALF 514 (717)
Q Consensus 503 ~~v~~~a~~~l~ 514 (717)
+.||..|+.+|.
T Consensus 884 ~~Vr~~A~~aL~ 895 (897)
T PRK13800 884 ADVRAYARRALA 895 (897)
T ss_pred HHHHHHHHHHHh
Confidence 999999999885
No 33
>PRK09687 putative lyase; Provisional
Probab=99.56 E-value=3.4e-13 Score=131.52 Aligned_cols=254 Identities=19% Similarity=0.166 Sum_probs=198.3
Q ss_pred ChHHHHHHHhccccCCCccchhHHHHHHHHHHHHHhhcCchhhhHHHhcCCcHHHHHhhcCCCHHHHHHHHHHHHHhhcc
Q 005044 158 ALSHLVNLLKRHMDSNCSRAVNSVIRRAADAITNLAHENSSIKTRVRMEGGIPPLVELLEFTDTKVQRAAAGALRTLAFK 237 (717)
Q Consensus 158 ~i~~L~~lL~~~~~~~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~L~~~ 237 (717)
.++.|..+|.+.+. .++..+++.|..+-. ...++.+..+++++++.+|..++++|..|...
T Consensus 24 ~~~~L~~~L~d~d~--------~vR~~A~~aL~~~~~-----------~~~~~~l~~ll~~~d~~vR~~A~~aLg~lg~~ 84 (280)
T PRK09687 24 NDDELFRLLDDHNS--------LKRISSIRVLQLRGG-----------QDVFRLAIELCSSKNPIERDIGADILSQLGMA 84 (280)
T ss_pred cHHHHHHHHhCCCH--------HHHHHHHHHHHhcCc-----------chHHHHHHHHHhCCCHHHHHHHHHHHHhcCCC
Confidence 47788999987766 899999999886642 22456788888999999999999999999742
Q ss_pred ChhhHHHHHhcCCHHHHHHH-HcCCCHHHHHHHHHHHHHhhcCChHHHHHHHHcCChHHHHHhhccCChHHHHHHHHHHH
Q 005044 238 NDENKNQIVECNALPTLILM-LRSEDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLSSCCSESQREAALLLG 316 (717)
Q Consensus 238 ~~~~~~~~~~~g~i~~L~~l-l~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~l~~L~~ll~~~~~~~~~~a~~~L~ 316 (717)
. .. ....++.|..+ ++++++.|+..|+.+|+++......- ...++..+...+.++++.+|..++.+|+
T Consensus 85 ~-~~-----~~~a~~~L~~l~~~D~d~~VR~~A~~aLG~~~~~~~~~-----~~~a~~~l~~~~~D~~~~VR~~a~~aLg 153 (280)
T PRK09687 85 K-RC-----QDNVFNILNNLALEDKSACVRASAINATGHRCKKNPLY-----SPKIVEQSQITAFDKSTNVRFAVAFALS 153 (280)
T ss_pred c-cc-----hHHHHHHHHHHHhcCCCHHHHHHHHHHHhccccccccc-----chHHHHHHHHHhhCCCHHHHHHHHHHHh
Confidence 1 11 11246777766 67889999999999999985432211 1124566777888889999999999998
Q ss_pred HHhcCChhhHHHHHhcCChHHHHHHhcCCCHHHHHHHHHHHHHhhcCCCCchhhHhcCChHHHHHhhcCCChhHHHHHHH
Q 005044 317 QFAATDSDCKVHIVQRGAVRPLIEMLQSPDVQLREMSAFALGRLAQDMHNQAGIAHNGGLVPLLKLLDSKNGSLQHNAAF 396 (717)
Q Consensus 317 ~l~~~~~~~~~~l~~~~~l~~L~~~l~~~~~~v~~~a~~~L~~l~~~~~~~~~l~~~~~l~~L~~ll~~~~~~v~~~a~~ 396 (717)
.+. + ...++.|+.++.++++.+|..|+.+|+++.... ..+++.|+.++.+.++.|+..|.+
T Consensus 154 ~~~--~---------~~ai~~L~~~L~d~~~~VR~~A~~aLg~~~~~~--------~~~~~~L~~~L~D~~~~VR~~A~~ 214 (280)
T PRK09687 154 VIN--D---------EAAIPLLINLLKDPNGDVRNWAAFALNSNKYDN--------PDIREAFVAMLQDKNEEIRIEAII 214 (280)
T ss_pred ccC--C---------HHHHHHHHHHhcCCCHHHHHHHHHHHhcCCCCC--------HHHHHHHHHHhcCCChHHHHHHHH
Confidence 773 1 225789999999999999999999999983221 136778999999999999999999
Q ss_pred HHHhccCCCcchHHHHHhcCccccccchhHHhhhHHHHHHHHHHHHHHhhhchHHHHHHHHhhcchhHHHHHHHHHHhcc
Q 005044 397 ALYGLADNEDNVADFIRVGGVQKLQDGEFIVQATKDCVAKTLKRLEEKIHGRVLNHLLYLMRVAEKGVQRRVALALAHLC 476 (717)
Q Consensus 397 ~L~~l~~~~~~~~~l~~~~~i~~L~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~L~~ll~~~~~~v~~~a~~aL~~l~ 476 (717)
+|..+-.. .+++.|++.+.+++ ++..++.+|+++.
T Consensus 215 aLg~~~~~-------------------------------------------~av~~Li~~L~~~~--~~~~a~~ALg~ig 249 (280)
T PRK09687 215 GLALRKDK-------------------------------------------RVLSVLIKELKKGT--VGDLIIEAAGELG 249 (280)
T ss_pred HHHccCCh-------------------------------------------hHHHHHHHHHcCCc--hHHHHHHHHHhcC
Confidence 99986431 16788999998866 6788999999885
Q ss_pred CCCCCceeeecCCCHHHHHHHhc-CCCchhhhhhHHHHHH
Q 005044 477 SPDDQRTIFIDGGGLELLLGLLG-STNPKQQLDGAVALFK 515 (717)
Q Consensus 477 ~~~~~~~~~~~~~~l~~L~~ll~-~~~~~v~~~a~~~l~~ 515 (717)
.. ..+|.|.+++. ++++.++..|.+++..
T Consensus 250 ~~----------~a~p~L~~l~~~~~d~~v~~~a~~a~~~ 279 (280)
T PRK09687 250 DK----------TLLPVLDTLLYKFDDNEIITKAIDKLKR 279 (280)
T ss_pred CH----------hHHHHHHHHHhhCCChhHHHHHHHHHhc
Confidence 43 47999999997 7899999999988754
No 34
>PRK09687 putative lyase; Provisional
Probab=99.55 E-value=1.1e-12 Score=128.04 Aligned_cols=254 Identities=16% Similarity=0.109 Sum_probs=197.4
Q ss_pred ChHHHHHhhcCCCCCccccCCCccchHHHhHHHHHHHHhcCChhhHHHHHhCCChHHHHHHHhccccCCCccchhHHHHH
Q 005044 105 AVPALVKHLQAPPTSEADRNLKPFEHEVEKGSAFALGLLAVKPEHQQLIVDNGALSHLVNLLKRHMDSNCSRAVNSVIRR 184 (717)
Q Consensus 105 ~i~~L~~lL~~~~~~~~~~~~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~i~~L~~lL~~~~~~~~~~~~~~~~~~ 184 (717)
.++.|+.+|.+.+. .+|..++++|+.+.+. .+++.+..++++.+. .++..
T Consensus 24 ~~~~L~~~L~d~d~------------~vR~~A~~aL~~~~~~----------~~~~~l~~ll~~~d~--------~vR~~ 73 (280)
T PRK09687 24 NDDELFRLLDDHNS------------LKRISSIRVLQLRGGQ----------DVFRLAIELCSSKNP--------IERDI 73 (280)
T ss_pred cHHHHHHHHhCCCH------------HHHHHHHHHHHhcCcc----------hHHHHHHHHHhCCCH--------HHHHH
Confidence 47889999988877 9999999999888632 236777888777665 89999
Q ss_pred HHHHHHHHhhcCchhhhHHHhcCCcHHHHHh-hcCCCHHHHHHHHHHHHHhhccChhhHHHHHhcCCHHHHHHHHcCCCH
Q 005044 185 AADAITNLAHENSSIKTRVRMEGGIPPLVEL-LEFTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSEDS 263 (717)
Q Consensus 185 a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~l-l~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~g~i~~L~~ll~~~~~ 263 (717)
++++|+.+-..... ....++.|..+ ++++++.||..|+.+|.+++...... ...+++.+...+.+++.
T Consensus 74 A~~aLg~lg~~~~~------~~~a~~~L~~l~~~D~d~~VR~~A~~aLG~~~~~~~~~-----~~~a~~~l~~~~~D~~~ 142 (280)
T PRK09687 74 GADILSQLGMAKRC------QDNVFNILNNLALEDKSACVRASAINATGHRCKKNPLY-----SPKIVEQSQITAFDKST 142 (280)
T ss_pred HHHHHHhcCCCccc------hHHHHHHHHHHHhcCCCHHHHHHHHHHHhccccccccc-----chHHHHHHHHHhhCCCH
Confidence 99999998642211 11245677766 67889999999999999997422111 11245667778889999
Q ss_pred HHHHHHHHHHHHhhcCChHHHHHHHHcCChHHHHHhhccCChHHHHHHHHHHHHHhcCChhhHHHHHhcCChHHHHHHhc
Q 005044 264 AIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLSSCCSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQ 343 (717)
Q Consensus 264 ~v~~~a~~~L~~l~~~~~~~~~~~~~~g~l~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~l~~~~~l~~L~~~l~ 343 (717)
.||..++++|+.+. ++ ..++.|+.++.++++.++..|+.+|+.+...++ ..++.|+..+.
T Consensus 143 ~VR~~a~~aLg~~~--~~---------~ai~~L~~~L~d~~~~VR~~A~~aLg~~~~~~~---------~~~~~L~~~L~ 202 (280)
T PRK09687 143 NVRFAVAFALSVIN--DE---------AAIPLLINLLKDPNGDVRNWAAFALNSNKYDNP---------DIREAFVAMLQ 202 (280)
T ss_pred HHHHHHHHHHhccC--CH---------HHHHHHHHHhcCCCHHHHHHHHHHHhcCCCCCH---------HHHHHHHHHhc
Confidence 99999999998773 22 258899999999999999999999999842222 35678999999
Q ss_pred CCCHHHHHHHHHHHHHhhcCCCCchhhHhcCChHHHHHhhcCCChhHHHHHHHHHHhccCCCcchHHHHHhcCccccccc
Q 005044 344 SPDVQLREMSAFALGRLAQDMHNQAGIAHNGGLVPLLKLLDSKNGSLQHNAAFALYGLADNEDNVADFIRVGGVQKLQDG 423 (717)
Q Consensus 344 ~~~~~v~~~a~~~L~~l~~~~~~~~~l~~~~~l~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~l~~~~~i~~L~~~ 423 (717)
+.++.||..|+++|+.+-. ..+++.|++.+.+++ ++..++.+|.++....
T Consensus 203 D~~~~VR~~A~~aLg~~~~----------~~av~~Li~~L~~~~--~~~~a~~ALg~ig~~~------------------ 252 (280)
T PRK09687 203 DKNEEIRIEAIIGLALRKD----------KRVLSVLIKELKKGT--VGDLIIEAAGELGDKT------------------ 252 (280)
T ss_pred CCChHHHHHHHHHHHccCC----------hhHHHHHHHHHcCCc--hHHHHHHHHHhcCCHh------------------
Confidence 9999999999999988632 247899999998866 6677888888876421
Q ss_pred hhHHhhhHHHHHHHHHHHHHHhhhchHHHHHHHHh-hcchhHHHHHHHHHHh
Q 005044 424 EFIVQATKDCVAKTLKRLEEKIHGRVLNHLLYLMR-VAEKGVQRRVALALAH 474 (717)
Q Consensus 424 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~L~~ll~-~~~~~v~~~a~~aL~~ 474 (717)
.+|.|..+++ .+++.++..+.++|..
T Consensus 253 -------------------------a~p~L~~l~~~~~d~~v~~~a~~a~~~ 279 (280)
T PRK09687 253 -------------------------LLPVLDTLLYKFDDNEIITKAIDKLKR 279 (280)
T ss_pred -------------------------HHHHHHHHHhhCCChhHHHHHHHHHhc
Confidence 6788999997 7799999999988854
No 35
>KOG1222 consensus Kinesin associated protein KAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.52 E-value=2.7e-12 Score=125.34 Aligned_cols=371 Identities=18% Similarity=0.173 Sum_probs=273.2
Q ss_pred CCCchHHHHHHHHHHHHhhhhhccccchHHHHHHHHHHHHHHHHhhcChhhHHHHHhCCChHHHHHhhcCCCCCccccCC
Q 005044 46 TSSSDARQALLSEVSAQVNVLNTTFSWLEADRAAAKRATHVLAELAKNEEVVNWIVEGGAVPALVKHLQAPPTSEADRNL 125 (717)
Q Consensus 46 ~~~~~~~~~~~~~i~~l~~~L~~~~~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~g~i~~L~~lL~~~~~~~~~~~~ 125 (717)
.-+.+...+....-..++.+|...++..+.+ ........|..++--.++...+.+.|.++.|++++....+
T Consensus 289 NlAed~~~ElKMrrkniV~mLVKaLdr~n~~--Ll~lv~~FLkKLSIf~eNK~~M~~~~iveKL~klfp~~h~------- 359 (791)
T KOG1222|consen 289 NLAEDISVELKMRRKNIVAMLVKALDRSNSS--LLTLVIKFLKKLSIFDENKIVMEQNGIVEKLLKLFPIQHP------- 359 (791)
T ss_pred HHhhhhhHHHHHHHHhHHHHHHHHHcccchH--HHHHHHHHHHHhhhhccchHHHHhccHHHHHHHhcCCCCH-------
Confidence 3444444455555556677777666655433 4556666777777767888899999999999999988777
Q ss_pred CccchHHHhHHHHHHHHhcCChhhHHHHHhCCChHHHHHHHhccccCCCccchhHHHHHHHHHHHHHhhcCchhhhHHHh
Q 005044 126 KPFEHEVEKGSAFALGLLAVKPEHQQLIVDNGALSHLVNLLKRHMDSNCSRAVNSVIRRAADAITNLAHENSSIKTRVRM 205 (717)
Q Consensus 126 ~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~i~~L~~lL~~~~~~~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~ 205 (717)
+++..++..|.|++.+...|..++..|.+|.+..+|.+... ...|+..|..++. +...+..+..
T Consensus 360 -----dL~~~tl~LlfNlSFD~glr~KMv~~GllP~l~~ll~~d~~----------~~iA~~~lYh~S~-dD~~K~Mfay 423 (791)
T KOG1222|consen 360 -----DLRKATLMLLFNLSFDSGLRPKMVNGGLLPHLASLLDSDTK----------HGIALNMLYHLSC-DDDAKAMFAY 423 (791)
T ss_pred -----HHHHHHHHHhhhccccccccHHHhhccchHHHHHHhCCccc----------chhhhhhhhhhcc-CcHHHHHHHH
Confidence 99999999999999888899999999999999999987643 2457778888887 6667888888
Q ss_pred cCCcHHHHHhh-cCCCHHHHHHHHHHHHHhhccChhhHHHHHhcCCHHHHHHH-HcCCCHHHHHHHHHHHHHhhcCChHH
Q 005044 206 EGGIPPLVELL-EFTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILM-LRSEDSAIHYEAVGVIGNLVHSSPNI 283 (717)
Q Consensus 206 ~~~i~~L~~ll-~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~g~i~~L~~l-l~~~~~~v~~~a~~~L~~l~~~~~~~ 283 (717)
.++++.+...+ ...+.++-........|||. +..+.+.+++..++..|++. ++..++- ....+.+++.+....
T Consensus 424 Tdci~~lmk~v~~~~~~~vdl~lia~ciNl~l-nkRNaQlvceGqgL~~LM~ra~k~~D~l----LmK~vRniSqHeg~t 498 (791)
T KOG1222|consen 424 TDCIKLLMKDVLSGTGSEVDLALIALCINLCL-NKRNAQLVCEGQGLDLLMERAIKSRDLL----LMKVVRNISQHEGAT 498 (791)
T ss_pred HHHHHHHHHHHHhcCCceecHHHHHHHHHHHh-ccccceEEecCcchHHHHHHHhcccchH----HHHHHHHhhhccchH
Confidence 89999988755 44556666666666678886 67777778887788888764 4444442 234567776665444
Q ss_pred HHHHHHcCChHHHHHhhccC-ChHHHHHHHHHHHHHhcCChhhHHHHHhcCChHHHHHHhcC--CCHHHHHHHHHHHHHh
Q 005044 284 KKEVLAAGALQPVIGLLSSC-CSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQS--PDVQLREMSAFALGRL 360 (717)
Q Consensus 284 ~~~~~~~g~l~~L~~ll~~~-~~~~~~~a~~~L~~l~~~~~~~~~~l~~~~~l~~L~~~l~~--~~~~v~~~a~~~L~~l 360 (717)
+..+++ .+..|...+..+ +.....++..+++|+...+-+....+.+.+++|.+-..|+. ...++....+-+++.+
T Consensus 499 qn~Fid--yvgdLa~i~~nd~~E~F~~EClGtlanL~v~dldw~~ilq~~~LvPw~k~~L~pga~eddLvL~~vi~~GT~ 576 (791)
T KOG1222|consen 499 QNMFID--YVGDLAGIAKNDNSESFGLECLGTLANLKVTDLDWAKILQSENLVPWMKTQLQPGADEDDLVLQIVIACGTM 576 (791)
T ss_pred HHHHHH--HHHHHHHHhhcCchHHHHHHHHHHHhhcccCCCCHHHHHhhccccHHHHHhhcCCccchhhhhHHHHHhhhh
Confidence 444443 344555555554 45667789999999987777888888889999999999976 3556777788888888
Q ss_pred hcCCCCchhhHhcCChHHHHHhhcC--CChhHHHHHHHHHHhccCCCcchHHHHHhcCccccccchhHHhhhHHHHHHHH
Q 005044 361 AQDMHNQAGIAHNGGLVPLLKLLDS--KNGSLQHNAAFALYGLADNEDNVADFIRVGGVQKLQDGEFIVQATKDCVAKTL 438 (717)
Q Consensus 361 ~~~~~~~~~l~~~~~l~~L~~ll~~--~~~~v~~~a~~~L~~l~~~~~~~~~l~~~~~i~~L~~~~~~~~~~~~~~~~~~ 438 (717)
++.......+...+.++.++++|+. .+.++......+...+..+...+..+...-
T Consensus 577 a~d~~cA~Lla~a~~i~tlieLL~a~QeDDEfV~QiiyVF~Q~l~He~tr~~miket----------------------- 633 (791)
T KOG1222|consen 577 ARDLDCARLLAPAKLIDTLIELLQACQEDDEFVVQIIYVFLQFLKHELTRRLMIKET----------------------- 633 (791)
T ss_pred hhhhHHHHHhCccccHHHHHHHHHhhcccchHHHHHHHHHHHHHHHHHHHHHHHhhc-----------------------
Confidence 8877777778888999999999965 355666666666666655554444444422
Q ss_pred HHHHHHhhhchHHHHHHHHhhcchhHHHHHHHHHHhccCCCC
Q 005044 439 KRLEEKIHGRVLNHLLYLMRVAEKGVQRRVALALAHLCSPDD 480 (717)
Q Consensus 439 ~~l~~~~~~~~~~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~ 480 (717)
..-..|+.++++.+.++|..+=.+|-.++..++
T Consensus 634 ---------~~~AylIDLMHDkN~eiRkVCDn~LdIiae~d~ 666 (791)
T KOG1222|consen 634 ---------ALGAYLIDLMHDKNAEIRKVCDNALDIIAEHDK 666 (791)
T ss_pred ---------cchHHHHHHHhcccHHHHHHHHHHHHHHHHhhH
Confidence 234568999999999999999999988876644
No 36
>KOG1293 consensus Proteins containing armadillo/beta-catenin-like repeat [General function prediction only]
Probab=99.51 E-value=1.2e-12 Score=133.36 Aligned_cols=394 Identities=16% Similarity=0.139 Sum_probs=262.0
Q ss_pred HHHHHHHHHHHHHHhhc-ChhhHHHHHhCCChHHHHHhhcCCCCCccccCCCccchHHHhHHHHHHHHhc-CChhhHHHH
Q 005044 76 DRAAAKRATHVLAELAK-NEEVVNWIVEGGAVPALVKHLQAPPTSEADRNLKPFEHEVEKGSAFALGLLA-VKPEHQQLI 153 (717)
Q Consensus 76 ~~~~~~~a~~~L~~l~~-~~~~~~~~~~~g~i~~L~~lL~~~~~~~~~~~~~~~~~~v~~~a~~~L~~l~-~~~~~~~~~ 153 (717)
++.....+..-..+++- .++....+++.|+++.|+.++...+.. ++++.+.+.+++.+. ........+
T Consensus 22 dpe~lvrai~~~kN~vig~~~~K~~~ik~GAv~~Ll~L~s~e~~s----------~~~k~~~~~llns~f~~eqd~v~sv 91 (678)
T KOG1293|consen 22 DPEQLVRAIYMSKNLVIGFTDNKETNIKLGAVELLLALLSLEDGS----------TELKNGFAVLLNSLFLGEQDKVDSV 91 (678)
T ss_pred CHHHHHHHHHHhcchhhcCCCccchhhhhcchHHHHhhccccCCc----------hhhhhhHHHHHHhHHhhccchHHHH
Confidence 33446788888888766 566666899999999999999876652 277778888888888 777778889
Q ss_pred HhCCChHHHHHHHhccccCCCccchhHHHHHHHHHHHHHhhcCchh----------------------------------
Q 005044 154 VDNGALSHLVNLLKRHMDSNCSRAVNSVIRRAADAITNLAHENSSI---------------------------------- 199 (717)
Q Consensus 154 ~~~~~i~~L~~lL~~~~~~~~~~~~~~~~~~a~~~L~~l~~~~~~~---------------------------------- 199 (717)
.+.+.++.|+.+|.+.+.. .++..+++++.++...++..
T Consensus 92 L~~~~ll~Ll~LLs~sD~~-------~~le~~l~~lR~Ifet~~~q~~~~s~~~~sIi~~~s~l~s~~lk~~~~l~~~~~ 164 (678)
T KOG1293|consen 92 LRIIELLKLLQLLSESDSL-------NVLEKTLRCLRTIFETSKYQDKKMSLHLKSIIVKFSLLYSIELKYISRLDVSRA 164 (678)
T ss_pred HHHhhHHHHHHHhcCcchH-------hHHHHHHHHHHHHHhcccccccchhhhHHHHHHHHHHHHhhhhhhhhhhhhhhh
Confidence 9999999999999887721 67777777777776533211
Q ss_pred ---------hhHHHhcCCcHHHHHhhcCCCHHHHHHHHHHHH---HhhccChhhHHH----HHhcCCHH--HHHHHHcCC
Q 005044 200 ---------KTRVRMEGGIPPLVELLEFTDTKVQRAAAGALR---TLAFKNDENKNQ----IVECNALP--TLILMLRSE 261 (717)
Q Consensus 200 ---------~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~---~L~~~~~~~~~~----~~~~g~i~--~L~~ll~~~ 261 (717)
+......|+...+.-++...+..+|.+|+.+++ ++...++..... ..+.|+.+ .+.++++++
T Consensus 165 a~~s~~~~hq~Il~Na~i~ekI~~l~~~~s~~~RlaaL~~~sr~~~iL~Nn~~~sm~~l~~L~d~~v~~r~~v~rL~k~~ 244 (678)
T KOG1293|consen 165 AHLSSTKDHQLILCNAGILEKINILLMYLSSKLRLAALLCLSRGDRILRNNPLGSMFLLGLLKDKGVNIRCVVTRLLKDP 244 (678)
T ss_pred ccccccchhhheeccccchhhHHHHHHhhhHHHHHHHHHHhhccceeeecCchhHHHHHHHHhccccchhhhhhhhhhCC
Confidence 111222233333333333445678888999988 776655554333 33456666 677888999
Q ss_pred CHHHHHHHHHHHHHhhcCChHHH-----HHHHHc----------------CC---------hHHH----HHhhccC----
Q 005044 262 DSAIHYEAVGVIGNLVHSSPNIK-----KEVLAA----------------GA---------LQPV----IGLLSSC---- 303 (717)
Q Consensus 262 ~~~v~~~a~~~L~~l~~~~~~~~-----~~~~~~----------------g~---------l~~L----~~ll~~~---- 303 (717)
+...+..++.+|..+...+...- ..+.+. ++ +-.+ .+-++..
T Consensus 245 ~~s~~l~sl~cl~~~~~~s~~~d~l~~~~~~~dmgd~~i~q~~~i~l~~~P~~s~l~~~~~l~c~~a~~~sklq~~~~e~ 324 (678)
T KOG1293|consen 245 DFSERLRSLECLVPYLRKSFNYDPLPWWFIFFDMGDSLIVQYNCIVLMNDPGLSTLDHTNVLFCILARFASKLQLPQHEE 324 (678)
T ss_pred CccHHHHHHHHHHHHHhccccccccccceeeccCchHHHHHHhhheeecCCceeehhhhhhhHHHHHHHHHhhhhHHhhh
Confidence 98888999999988865541000 000001 11 0011 1111110
Q ss_pred -ChHHHHHHHHHHHHHhcCChhhHHHHHhcCChHH----------------------HHHHhcCCCHHHHHHHHHHHHHh
Q 005044 304 -CSESQREAALLLGQFAATDSDCKVHIVQRGAVRP----------------------LIEMLQSPDVQLREMSAFALGRL 360 (717)
Q Consensus 304 -~~~~~~~a~~~L~~l~~~~~~~~~~l~~~~~l~~----------------------L~~~l~~~~~~v~~~a~~~L~~l 360 (717)
..+.......+-..+++..+.++..+.+...++. +.......+...+.+|+.++.++
T Consensus 325 ~~~~~~~ellf~~~sl~a~~~~~~~i~l~e~~i~~~~~~~~~i~~~k~~l~~~t~~~l~~~~~~kd~~~~aaa~l~~~s~ 404 (678)
T KOG1293|consen 325 ATLKTTTELLFICASLAASDEKYRLILLNETLILNHLEYGLEISLKKEILETTTESHLMCLPPIKDHDFVAAALLCLKSF 404 (678)
T ss_pred hhhhhHHHHHHHHHHHhhcchhhhHHHhhhhhhhhhhhhhcchhHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHH
Confidence 0111122233334444444444443333322211 11111235777888889899888
Q ss_pred hcCCC-CchhhHhcCChHHHHHhhcCCChhHHHHHHHHHHhccC-CCcchHHHHHhcCccccccchhHHhhhHHHHHHHH
Q 005044 361 AQDMH-NQAGIAHNGGLVPLLKLLDSKNGSLQHNAAFALYGLAD-NEDNVADFIRVGGVQKLQDGEFIVQATKDCVAKTL 438 (717)
Q Consensus 361 ~~~~~-~~~~l~~~~~l~~L~~ll~~~~~~v~~~a~~~L~~l~~-~~~~~~~l~~~~~i~~L~~~~~~~~~~~~~~~~~~ 438 (717)
++.-. -+..+....+..+|++++++++..|+..++++|+|+.. ....+..|.+.|+
T Consensus 405 srsV~aL~tg~~~~dv~~plvqll~dp~~~i~~~~lgai~NlVmefs~~kskfl~~ng---------------------- 462 (678)
T KOG1293|consen 405 SRSVSALRTGLKRNDVAQPLVQLLMDPEIMIMGITLGAICNLVMEFSNLKSKFLRNNG---------------------- 462 (678)
T ss_pred HHHHHHHHcCCccchhHHHHHHHhhCcchhHHHHHHHHHHHHHhhcccHHHHHHHcCc----------------------
Confidence 86322 23346667889999999999999999999999999965 5677778888775
Q ss_pred HHHHHHhhhchHHHHHHHHhhcchhHHHHHHHHHHhccCCCC--CceeeecCCCHHHHHHHhcCCCchhhhhhHHHHHHh
Q 005044 439 KRLEEKIHGRVLNHLLYLMRVAEKGVQRRVALALAHLCSPDD--QRTIFIDGGGLELLLGLLGSTNPKQQLDGAVALFKL 516 (717)
Q Consensus 439 ~~l~~~~~~~~~~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~--~~~~~~~~~~l~~L~~ll~~~~~~v~~~a~~~l~~L 516 (717)
+..+..++.+.++.++..++|+|.++..+.+ .+..+...=+...|..+.+++++.|++.+...|.|+
T Consensus 463 -----------Id~l~s~~~~~~~n~r~~~~~~Lr~l~f~~de~~k~~~~~ki~a~~i~~l~nd~d~~Vqeq~fqllRNl 531 (678)
T KOG1293|consen 463 -----------IDILESMLTDPDFNSRANSLWVLRHLMFNCDEEEKFQLLAKIPANLILDLINDPDWAVQEQCFQLLRNL 531 (678)
T ss_pred -----------HHHHHHHhcCCCchHHHHHHHHHHHHHhcchHHHHHHHHHHhhHHHHHHHHhCCCHHHHHHHHHHHHHh
Confidence 4558889999999999999999999988766 233333333556788889999999999999999999
Q ss_pred hhc
Q 005044 517 ANK 519 (717)
Q Consensus 517 ~~~ 519 (717)
..+
T Consensus 532 ~c~ 534 (678)
T KOG1293|consen 532 TCN 534 (678)
T ss_pred hcC
Confidence 876
No 37
>KOG1222 consensus Kinesin associated protein KAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.49 E-value=1.3e-11 Score=120.75 Aligned_cols=400 Identities=16% Similarity=0.151 Sum_probs=289.1
Q ss_pred HHHHHHHHHHhhhhhccccchHHHHHHHHHHHHHHHHhhcChhhHHHHHhCCChHHHHHhhcCCCCCccccCCCccchHH
Q 005044 53 QALLSEVSAQVNVLNTTFSWLEADRAAAKRATHVLAELAKNEEVVNWIVEGGAVPALVKHLQAPPTSEADRNLKPFEHEV 132 (717)
Q Consensus 53 ~~~~~~i~~l~~~L~~~~~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~g~i~~L~~lL~~~~~~~~~~~~~~~~~~v 132 (717)
+.....+.++-+.++..... .......|+..|.+++.+-..-..++....+..|++.|..++. ++
T Consensus 256 etLk~e~dr~~kklk~~~~K---QeqLLrva~ylLlNlAed~~~ElKMrrkniV~mLVKaLdr~n~------------~L 320 (791)
T KOG1222|consen 256 ETLKEEIDRLNKKLKTAIRK---QEQLLRVAVYLLLNLAEDISVELKMRRKNIVAMLVKALDRSNS------------SL 320 (791)
T ss_pred hhHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHhhhhhHHHHHHHHhHHHHHHHHHcccch------------HH
Confidence 33455566666666555332 2335678888999999977777788888999999999999887 88
Q ss_pred HhHHHHHHHHhcCChhhHHHHHhCCChHHHHHHHhccccCCCccchhHHHHHHHHHHHHHhhcCchhhhHHHhcCCcHHH
Q 005044 133 EKGSAFALGLLAVKPEHQQLIVDNGALSHLVNLLKRHMDSNCSRAVNSVIRRAADAITNLAHENSSIKTRVRMEGGIPPL 212 (717)
Q Consensus 133 ~~~a~~~L~~l~~~~~~~~~~~~~~~i~~L~~lL~~~~~~~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L 212 (717)
.......|-.|+--.+++..+.+.|.+..|+++....++ +++...+..+.|++. +...+..++..|.+|.+
T Consensus 321 l~lv~~FLkKLSIf~eNK~~M~~~~iveKL~klfp~~h~--------dL~~~tl~LlfNlSF-D~glr~KMv~~GllP~l 391 (791)
T KOG1222|consen 321 LTLVIKFLKKLSIFDENKIVMEQNGIVEKLLKLFPIQHP--------DLRKATLMLLFNLSF-DSGLRPKMVNGGLLPHL 391 (791)
T ss_pred HHHHHHHHHHhhhhccchHHHHhccHHHHHHHhcCCCCH--------HHHHHHHHHhhhccc-cccccHHHhhccchHHH
Confidence 899999999999666778889999999999999988877 899999999999999 66678888999999999
Q ss_pred HHhhcCCCHHHHHHHHHHHHHhhccChhhHHHHHhcCCHHHHHHHH-cCCCHHHHHHHHHHHHHhhcCChHHHHHHHHcC
Q 005044 213 VELLEFTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILML-RSEDSAIHYEAVGVIGNLVHSSPNIKKEVLAAG 291 (717)
Q Consensus 213 ~~ll~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~g~i~~L~~ll-~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g 291 (717)
..++.++.. ...|+..|..++. ++..+..+.-...++.+++.+ ...+.+|-...+..-.|++.. ..+.+.+.+..
T Consensus 392 ~~ll~~d~~--~~iA~~~lYh~S~-dD~~K~MfayTdci~~lmk~v~~~~~~~vdl~lia~ciNl~ln-kRNaQlvceGq 467 (791)
T KOG1222|consen 392 ASLLDSDTK--HGIALNMLYHLSC-DDDAKAMFAYTDCIKLLMKDVLSGTGSEVDLALIALCINLCLN-KRNAQLVCEGQ 467 (791)
T ss_pred HHHhCCccc--chhhhhhhhhhcc-CcHHHHHHHHHHHHHHHHHHHHhcCCceecHHHHHHHHHHHhc-cccceEEecCc
Confidence 999976543 3456777888886 778888888888999988755 445566666666666677644 34446666667
Q ss_pred ChHHHHHhh-ccCChHHHHHHHHHHHHHhcCChhhHHHHHhcCChHHHHHHhcC-CCHHHHHHHHHHHHHhhcCCCCchh
Q 005044 292 ALQPVIGLL-SSCCSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQS-PDVQLREMSAFALGRLAQDMHNQAG 369 (717)
Q Consensus 292 ~l~~L~~ll-~~~~~~~~~~a~~~L~~l~~~~~~~~~~l~~~~~l~~L~~~l~~-~~~~v~~~a~~~L~~l~~~~~~~~~ 369 (717)
++..|++.- +..+.- ....+.|++.+....+..+++ .+..|...++. .+.....+++++++||...+-.-..
T Consensus 468 gL~~LM~ra~k~~D~l----LmK~vRniSqHeg~tqn~Fid--yvgdLa~i~~nd~~E~F~~EClGtlanL~v~dldw~~ 541 (791)
T KOG1222|consen 468 GLDLLMERAIKSRDLL----LMKVVRNISQHEGATQNMFID--YVGDLAGIAKNDNSESFGLECLGTLANLKVTDLDWAK 541 (791)
T ss_pred chHHHHHHHhcccchH----HHHHHHHhhhccchHHHHHHH--HHHHHHHHhhcCchHHHHHHHHHHHhhcccCCCCHHH
Confidence 888888754 333332 245778887665545544544 45667777765 3445666788888888875555444
Q ss_pred -hHhcCChHHHHHhhcCC--ChhHHHHHHHHHHhccCCCcchHHHHHhcCccccccchhHHhhhHHHHHHHHHHHHHHhh
Q 005044 370 -IAHNGGLVPLLKLLDSK--NGSLQHNAAFALYGLADNEDNVADFIRVGGVQKLQDGEFIVQATKDCVAKTLKRLEEKIH 446 (717)
Q Consensus 370 -l~~~~~l~~L~~ll~~~--~~~v~~~a~~~L~~l~~~~~~~~~l~~~~~i~~L~~~~~~~~~~~~~~~~~~~~l~~~~~ 446 (717)
+-....+|.+-..|..+ ..++.....-+++.+++.......+..+|
T Consensus 542 ilq~~~LvPw~k~~L~pga~eddLvL~~vi~~GT~a~d~~cA~Lla~a~------------------------------- 590 (791)
T KOG1222|consen 542 ILQSENLVPWMKTQLQPGADEDDLVLQIVIACGTMARDLDCARLLAPAK------------------------------- 590 (791)
T ss_pred HHhhccccHHHHHhhcCCccchhhhhHHHHHhhhhhhhhHHHHHhCccc-------------------------------
Confidence 44557888888877653 44556666666777776665544444444
Q ss_pred hchHHHHHHHHhhc--chhHHHHHHHHHHhccCCCCCceeeecCCCH-HHHHHHhcCCCchhhhhhHHHHHHhhhc
Q 005044 447 GRVLNHLLYLMRVA--EKGVQRRVALALAHLCSPDDQRTIFIDGGGL-ELLLGLLGSTNPKQQLDGAVALFKLANK 519 (717)
Q Consensus 447 ~~~~~~L~~ll~~~--~~~v~~~a~~aL~~l~~~~~~~~~~~~~~~l-~~L~~ll~~~~~~v~~~a~~~l~~L~~~ 519 (717)
+++.|+.+|+.. +.++....+.+...+..+...+..++++... ..|+.++.+.+.++|+.+-.+|-=++.+
T Consensus 591 --~i~tlieLL~a~QeDDEfV~QiiyVF~Q~l~He~tr~~miket~~~AylIDLMHDkN~eiRkVCDn~LdIiae~ 664 (791)
T KOG1222|consen 591 --LIDTLIELLQACQEDDEFVVQIIYVFLQFLKHELTRRLMIKETALGAYLIDLMHDKNAEIRKVCDNALDIIAEH 664 (791)
T ss_pred --cHHHHHHHHHhhcccchHHHHHHHHHHHHHHHHHHHHHHHhhccchHHHHHHHhcccHHHHHHHHHHHHHHHHh
Confidence 677788888764 5677777777777776665555555555444 5688999999999998888887766654
No 38
>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional
Probab=99.46 E-value=2.2e-11 Score=139.76 Aligned_cols=264 Identities=21% Similarity=0.170 Sum_probs=205.9
Q ss_pred HHHHHHHHHHHHHHHhhcChhhHHHHHhCCChHHHHHhhcCCCCCccccCCCccchHHHhHHHHHHHHhcCChhhHHHHH
Q 005044 75 ADRAAAKRATHVLAELAKNEEVVNWIVEGGAVPALVKHLQAPPTSEADRNLKPFEHEVEKGSAFALGLLAVKPEHQQLIV 154 (717)
Q Consensus 75 ~~~~~~~~a~~~L~~l~~~~~~~~~~~~~g~i~~L~~lL~~~~~~~~~~~~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~ 154 (717)
+++.+|..|+..|..+.. .+.++.|+.+|++++. .||..|+.+|..+.....
T Consensus 633 ~d~~VR~~Av~~L~~~~~----------~~~~~~L~~aL~D~d~------------~VR~~Aa~aL~~l~~~~~------ 684 (897)
T PRK13800 633 PDPGVRRTAVAVLTETTP----------PGFGPALVAALGDGAA------------AVRRAAAEGLRELVEVLP------ 684 (897)
T ss_pred CCHHHHHHHHHHHhhhcc----------hhHHHHHHHHHcCCCH------------HHHHHHHHHHHHHHhccC------
Confidence 366789999999887642 3457999999987766 999999999998862211
Q ss_pred hCCChHHHHHHHhccccCCCccchhHHHHHHHHHHHHHhhcCchhhhHHHhcCCcHHHHHhhcCCCHHHHHHHHHHHHHh
Q 005044 155 DNGALSHLVNLLKRHMDSNCSRAVNSVIRRAADAITNLAHENSSIKTRVRMEGGIPPLVELLEFTDTKVQRAAAGALRTL 234 (717)
Q Consensus 155 ~~~~i~~L~~lL~~~~~~~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~L 234 (717)
..+.+...|.+.+. .++..++..|..+.. +....++..|+++++.+|..|+.+|..+
T Consensus 685 ---~~~~L~~~L~~~d~--------~VR~~A~~aL~~~~~------------~~~~~l~~~L~D~d~~VR~~Av~aL~~~ 741 (897)
T PRK13800 685 ---PAPALRDHLGSPDP--------VVRAAALDVLRALRA------------GDAALFAAALGDPDHRVRIEAVRALVSV 741 (897)
T ss_pred ---chHHHHHHhcCCCH--------HHHHHHHHHHHhhcc------------CCHHHHHHHhcCCCHHHHHHHHHHHhcc
Confidence 13567777876544 899999998887642 1134577889999999999999999876
Q ss_pred hccChhhHHHHHhcCCHHHHHHHHcCCCHHHHHHHHHHHHHhhcCChHHHHHHHHcCChHHHHHhhccCChHHHHHHHHH
Q 005044 235 AFKNDENKNQIVECNALPTLILMLRSEDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLSSCCSESQREAALL 314 (717)
Q Consensus 235 ~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~l~~L~~ll~~~~~~~~~~a~~~ 314 (717)
-. .+.|..++.++++.||..++.+|+.+.... ...++.|..++.++++.+|..|+.+
T Consensus 742 ~~--------------~~~l~~~l~D~~~~VR~~aa~aL~~~~~~~---------~~~~~~L~~ll~D~d~~VR~aA~~a 798 (897)
T PRK13800 742 DD--------------VESVAGAATDENREVRIAVAKGLATLGAGG---------APAGDAVRALTGDPDPLVRAAALAA 798 (897)
T ss_pred cC--------------cHHHHHHhcCCCHHHHHHHHHHHHHhcccc---------chhHHHHHHHhcCCCHHHHHHHHHH
Confidence 31 245678899999999999999999985322 1237788999999999999999999
Q ss_pred HHHHhcCChhhHHHHHhcCChHHHHHHhcCCCHHHHHHHHHHHHHhhcCCCCchhhHhcCChHHHHHhhcCCChhHHHHH
Q 005044 315 LGQFAATDSDCKVHIVQRGAVRPLIEMLQSPDVQLREMSAFALGRLAQDMHNQAGIAHNGGLVPLLKLLDSKNGSLQHNA 394 (717)
Q Consensus 315 L~~l~~~~~~~~~~l~~~~~l~~L~~~l~~~~~~v~~~a~~~L~~l~~~~~~~~~l~~~~~l~~L~~ll~~~~~~v~~~a 394 (717)
|+++.. +. ...+.++..+.++++.+|..|+.+|..+.. ...++.|+.++.+.++.||..|
T Consensus 799 Lg~~g~--~~--------~~~~~l~~aL~d~d~~VR~~Aa~aL~~l~~----------~~a~~~L~~~L~D~~~~VR~~A 858 (897)
T PRK13800 799 LAELGC--PP--------DDVAAATAALRASAWQVRQGAARALAGAAA----------DVAVPALVEALTDPHLDVRKAA 858 (897)
T ss_pred HHhcCC--cc--------hhHHHHHHHhcCCChHHHHHHHHHHHhccc----------cchHHHHHHHhcCCCHHHHHHH
Confidence 999842 11 123568888999999999999999987742 2356889999999999999999
Q ss_pred HHHHHhccCCCcchHHHHHhcCccccccchhHHhhhHHHHHHHHHHHHHHhhhchHHHHHHHHhhcchhHHHHHHHHHHh
Q 005044 395 AFALYGLADNEDNVADFIRVGGVQKLQDGEFIVQATKDCVAKTLKRLEEKIHGRVLNHLLYLMRVAEKGVQRRVALALAH 474 (717)
Q Consensus 395 ~~~L~~l~~~~~~~~~l~~~~~i~~L~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~L~~ll~~~~~~v~~~a~~aL~~ 474 (717)
+.+|..+...+. ..+.|...+.+.++.||..|..+|..
T Consensus 859 ~~aL~~~~~~~~------------------------------------------a~~~L~~al~D~d~~Vr~~A~~aL~~ 896 (897)
T PRK13800 859 VLALTRWPGDPA------------------------------------------ARDALTTALTDSDADVRAYARRALAH 896 (897)
T ss_pred HHHHhccCCCHH------------------------------------------HHHHHHHHHhCCCHHHHHHHHHHHhh
Confidence 999998732221 35567889999999999999999864
No 39
>PF04826 Arm_2: Armadillo-like; InterPro: IPR006911 This entry consists of mammalian proteins of unknown function.
Probab=99.45 E-value=2e-11 Score=116.12 Aligned_cols=191 Identities=18% Similarity=0.186 Sum_probs=158.4
Q ss_pred HHHHhhhhhccccchHHHHHHHHHHHHHHHHhhcChhhHHHHHhCCChHHHHHhhcCCCCCccccCCCccchHHHhHHHH
Q 005044 59 VSAQVNVLNTTFSWLEADRAAAKRATHVLAELAKNEEVVNWIVEGGAVPALVKHLQAPPTSEADRNLKPFEHEVEKGSAF 138 (717)
Q Consensus 59 i~~l~~~L~~~~~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~g~i~~L~~lL~~~~~~~~~~~~~~~~~~v~~~a~~ 138 (717)
...++.+|... .|+.++..++.++.+.+..+.++..+.+.|+++.+..+|.++++ .++..|++
T Consensus 14 l~~Ll~lL~~t-----~dp~i~e~al~al~n~aaf~~nq~~Ir~~Ggi~lI~~lL~~p~~------------~vr~~AL~ 76 (254)
T PF04826_consen 14 LQKLLCLLEST-----EDPFIQEKALIALGNSAAFPFNQDIIRDLGGISLIGSLLNDPNP------------SVREKALN 76 (254)
T ss_pred HHHHHHHHhcC-----CChHHHHHHHHHHHhhccChhHHHHHHHcCCHHHHHHHcCCCCh------------HHHHHHHH
Confidence 34455555543 36678999999999998899999999999999999999999877 99999999
Q ss_pred HHHHhcCChhhHHHHHhCCChHHHHHHHhccccCCCccchhHHHHHHHHHHHHHhhcCchhhhHHHhcCCcHHHHHhhcC
Q 005044 139 ALGLLAVKPEHQQLIVDNGALSHLVNLLKRHMDSNCSRAVNSVIRRAADAITNLAHENSSIKTRVRMEGGIPPLVELLEF 218 (717)
Q Consensus 139 ~L~~l~~~~~~~~~~~~~~~i~~L~~lL~~~~~~~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~ 218 (717)
+|.|++.+.+++..+-. .++.+++......-++ +++..+++.|.||+..+. .+..+. +.++.++.+|.+
T Consensus 77 aL~Nls~~~en~~~Ik~--~i~~Vc~~~~s~~lns------~~Q~agLrlL~nLtv~~~-~~~~l~--~~i~~ll~LL~~ 145 (254)
T PF04826_consen 77 ALNNLSVNDENQEQIKM--YIPQVCEETVSSPLNS------EVQLAGLRLLTNLTVTND-YHHMLA--NYIPDLLSLLSS 145 (254)
T ss_pred HHHhcCCChhhHHHHHH--HHHHHHHHHhcCCCCC------HHHHHHHHHHHccCCCcc-hhhhHH--hhHHHHHHHHHc
Confidence 99999988888877653 4777776555442222 899999999999987443 344443 479999999999
Q ss_pred CCHHHHHHHHHHHHHhhccChhhHHHHHhcCCHHHHHHHHcCC-CHHHHHHHHHHHHHhhc
Q 005044 219 TDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSE-DSAIHYEAVGVIGNLVH 278 (717)
Q Consensus 219 ~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~g~i~~L~~ll~~~-~~~v~~~a~~~L~~l~~ 278 (717)
++..++..++++|.||+. ++...+.+...+++..++.++..+ +.++...++..+.|+..
T Consensus 146 G~~~~k~~vLk~L~nLS~-np~~~~~Ll~~q~~~~~~~Lf~~~~~~~~l~~~l~~~~ni~~ 205 (254)
T PF04826_consen 146 GSEKTKVQVLKVLVNLSE-NPDMTRELLSAQVLSSFLSLFNSSESKENLLRVLTFFENINE 205 (254)
T ss_pred CChHHHHHHHHHHHHhcc-CHHHHHHHHhccchhHHHHHHccCCccHHHHHHHHHHHHHHH
Confidence 999999999999999997 888888999889999999999875 67889999999999953
No 40
>PF04826 Arm_2: Armadillo-like; InterPro: IPR006911 This entry consists of mammalian proteins of unknown function.
Probab=99.42 E-value=2.3e-11 Score=115.66 Aligned_cols=226 Identities=22% Similarity=0.301 Sum_probs=174.9
Q ss_pred HhCCChHHHHHhhcCCCCCccccCCCccchHHHhHHHHHHHHhcCChhhHHHHHhCCChHHHHHHHhccccCCCccchhH
Q 005044 101 VEGGAVPALVKHLQAPPTSEADRNLKPFEHEVEKGSAFALGLLAVKPEHQQLIVDNGALSHLVNLLKRHMDSNCSRAVNS 180 (717)
Q Consensus 101 ~~~g~i~~L~~lL~~~~~~~~~~~~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~i~~L~~lL~~~~~~~~~~~~~~ 180 (717)
.+.+-++.|+.+|+.+.. |.+++.++.++++.+..+.+++.+.+.|+++.+..+|.+.++ .
T Consensus 9 l~~~~l~~Ll~lL~~t~d-----------p~i~e~al~al~n~aaf~~nq~~Ir~~Ggi~lI~~lL~~p~~--------~ 69 (254)
T PF04826_consen 9 LEAQELQKLLCLLESTED-----------PFIQEKALIALGNSAAFPFNQDIIRDLGGISLIGSLLNDPNP--------S 69 (254)
T ss_pred cCHHHHHHHHHHHhcCCC-----------hHHHHHHHHHHHhhccChhHHHHHHHcCCHHHHHHHcCCCCh--------H
Confidence 455668999999987543 399999999999999999999999999999999999999876 8
Q ss_pred HHHHHHHHHHHHhhcCchhhhHHHhcCCcHHHHHhhcC--CCHHHHHHHHHHHHHhhccChhhHHHHHhcCCHHHHHHHH
Q 005044 181 VIRRAADAITNLAHENSSIKTRVRMEGGIPPLVELLEF--TDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILML 258 (717)
Q Consensus 181 ~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~--~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~g~i~~L~~ll 258 (717)
++..|+++|.|++. +.+++..+. ..++.+.+.+.+ -+..++..++++|.+|+. .++....+.. .++.++.+|
T Consensus 70 vr~~AL~aL~Nls~-~~en~~~Ik--~~i~~Vc~~~~s~~lns~~Q~agLrlL~nLtv-~~~~~~~l~~--~i~~ll~LL 143 (254)
T PF04826_consen 70 VREKALNALNNLSV-NDENQEQIK--MYIPQVCEETVSSPLNSEVQLAGLRLLTNLTV-TNDYHHMLAN--YIPDLLSLL 143 (254)
T ss_pred HHHHHHHHHHhcCC-ChhhHHHHH--HHHHHHHHHHhcCCCCCHHHHHHHHHHHccCC-CcchhhhHHh--hHHHHHHHH
Confidence 99999999999998 444554443 246666664433 367999999999999986 4555555554 699999999
Q ss_pred cCCCHHHHHHHHHHHHHhhcCChHHHHHHHHcCChHHHHHhhccC-ChHHHHHHHHHHHHHhcCChhh------------
Q 005044 259 RSEDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLSSC-CSESQREAALLLGQFAATDSDC------------ 325 (717)
Q Consensus 259 ~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~l~~L~~ll~~~-~~~~~~~a~~~L~~l~~~~~~~------------ 325 (717)
..++..++..++++|.||+.. +...+.++.++++..++.++..+ +.++...+...+.|+..+-...
T Consensus 144 ~~G~~~~k~~vLk~L~nLS~n-p~~~~~Ll~~q~~~~~~~Lf~~~~~~~~l~~~l~~~~ni~~~~~~~~~~~~~~~~~~~ 222 (254)
T PF04826_consen 144 SSGSEKTKVQVLKVLVNLSEN-PDMTRELLSAQVLSSFLSLFNSSESKENLLRVLTFFENINENIKKEAYVFVQDDFSED 222 (254)
T ss_pred HcCChHHHHHHHHHHHHhccC-HHHHHHHHhccchhHHHHHHccCCccHHHHHHHHHHHHHHHhhCcccceeccccCCch
Confidence 999999999999999999765 66778888899999999999886 5778888999999985321111
Q ss_pred --HHHHHhcC-ChHHHHHHhcCCCHHHHHH
Q 005044 326 --KVHIVQRG-AVRPLIEMLQSPDVQLREM 352 (717)
Q Consensus 326 --~~~l~~~~-~l~~L~~~l~~~~~~v~~~ 352 (717)
...+.+.+ +.+.|..+..++|++|+..
T Consensus 223 ~L~~~~~e~~~~~~~l~~l~~h~d~ev~~~ 252 (254)
T PF04826_consen 223 SLFSLFGESSQLAKKLQALANHPDPEVKEQ 252 (254)
T ss_pred hHHHHHccHHHHHHHHHHHHcCCCHHHhhh
Confidence 11112222 4455666666677777654
No 41
>KOG2171 consensus Karyopherin (importin) beta 3 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.37 E-value=2.8e-10 Score=123.95 Aligned_cols=397 Identities=17% Similarity=0.176 Sum_probs=251.4
Q ss_pred HHHHHhhhhhccccchHHHHHHHHHHHHHHHHhhcChhhHHHHHhCCChHHHHHhhcCCCCCccccCCCccchHHHhHHH
Q 005044 58 EVSAQVNVLNTTFSWLEADRAAAKRATHVLAELAKNEEVVNWIVEGGAVPALVKHLQAPPTSEADRNLKPFEHEVEKGSA 137 (717)
Q Consensus 58 ~i~~l~~~L~~~~~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~g~i~~L~~lL~~~~~~~~~~~~~~~~~~v~~~a~ 137 (717)
.-|.++++|.....+. +...|+.|+.+|..+...-.++. .+-++.+..++...-.+.+ + .||..|+
T Consensus 115 ~WPell~~L~q~~~S~--~~~~rE~al~il~s~~~~~~~~~----~~~~~~l~~lf~q~~~d~s-------~-~vr~~a~ 180 (1075)
T KOG2171|consen 115 KWPELLQFLFQSTKSP--NPSLRESALLILSSLPETFGNTL----QPHLDDLLRLFSQTMTDPS-------S-PVRVAAV 180 (1075)
T ss_pred chHHHHHHHHHHhcCC--CcchhHHHHHHHHhhhhhhcccc----chhHHHHHHHHHHhccCCc-------c-hHHHHHH
Confidence 4566778887776655 34458999999998876321111 2234555555554433221 2 5999999
Q ss_pred HHHHHhc-CC---hhhHHHHHhCCChHHHHHHHhccccCCCccchhHHHHHHHHHHHHHhhcCchhhhHHHhcCCcHHHH
Q 005044 138 FALGLLA-VK---PEHQQLIVDNGALSHLVNLLKRHMDSNCSRAVNSVIRRAADAITNLAHENSSIKTRVRMEGGIPPLV 213 (717)
Q Consensus 138 ~~L~~l~-~~---~~~~~~~~~~~~i~~L~~lL~~~~~~~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~ 213 (717)
++++.++ .. +..+..+. ..+|.++..+...-...+. .....+..+|..+....+..-.... ..++...+
T Consensus 181 rA~~a~~~~~~~~~~~~~~~~--~llP~~l~vl~~~i~~~d~----~~a~~~l~~l~El~e~~pk~l~~~l-~~ii~~~l 253 (1075)
T KOG2171|consen 181 RALGAFAEYLENNKSEVDKFR--DLLPSLLNVLQEVIQDGDD----DAAKSALEALIELLESEPKLLRPHL-SQIIQFSL 253 (1075)
T ss_pred HHHHHHHHHhccchHHHHHHH--HHhHHHHHHhHhhhhccch----HHHHHHHHHHHHHHhhchHHHHHHH-HHHHHHHH
Confidence 9999999 33 33344444 3477777777654332211 4556677788888775554322211 12444555
Q ss_pred HhhcC--CCHHHHHHHHHHHHHhhccChhhHHHHHh--cCCHHHHHHHHcCC--C--------------HHHHHHHHHHH
Q 005044 214 ELLEF--TDTKVQRAAAGALRTLAFKNDENKNQIVE--CNALPTLILMLRSE--D--------------SAIHYEAVGVI 273 (717)
Q Consensus 214 ~ll~~--~~~~v~~~a~~~L~~L~~~~~~~~~~~~~--~g~i~~L~~ll~~~--~--------------~~v~~~a~~~L 273 (717)
.+.++ -+..+|..|+.+|..++..-+...+.... ..+++.++..+.+. | ..-...|.++|
T Consensus 254 ~Ia~n~~l~~~~R~~ALe~ivs~~e~Ap~~~k~~~~~~~~lv~~~l~~mte~~~D~ew~~~d~~ded~~~~~~~~A~~~l 333 (1075)
T KOG2171|consen 254 EIAKNKELENSIRHLALEFLVSLSEYAPAMCKKLALLGHTLVPVLLAMMTEEEDDDEWSNEDDLDEDDEETPYRAAEQAL 333 (1075)
T ss_pred HHhhcccccHHHHHHHHHHHHHHHHhhHHHhhhchhhhccHHHHHHHhcCCcccchhhccccccccccccCcHHHHHHHH
Confidence 55554 36889999999999998753333322222 23455555555421 0 12355666777
Q ss_pred HHhhcCChHHHHHHHHcCChHHHHHhhccCChHHHHHHHHHHHHHhcCChhhHHHHHhcCChHHHHHHhcCCCHHHHHHH
Q 005044 274 GNLVHSSPNIKKEVLAAGALQPVIGLLSSCCSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQSPDVQLREMS 353 (717)
Q Consensus 274 ~~l~~~~~~~~~~~~~~g~l~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~l~~~~~l~~L~~~l~~~~~~v~~~a 353 (717)
-.++.+-+. ..+-.-.++.+-.++.+.++.-|+.++.+|+.++.+..+.....+ ..+++.+++.+++++|.||.+|
T Consensus 334 DrlA~~L~g---~~v~p~~~~~l~~~l~S~~w~~R~AaL~Als~i~EGc~~~m~~~l-~~Il~~Vl~~l~DphprVr~AA 409 (1075)
T KOG2171|consen 334 DRLALHLGG---KQVLPPLFEALEAMLQSTEWKERHAALLALSVIAEGCSDVMIGNL-PKILPIVLNGLNDPHPRVRYAA 409 (1075)
T ss_pred HHHHhcCCh---hhehHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHcccHHHHHHHH-HHHHHHHHhhcCCCCHHHHHHH
Confidence 666554321 111223466677788999999999999999999987777655433 4588889999999999999999
Q ss_pred HHHHHHhhcCCCCc-hhhHhcCChHHHHHhhcC-CChhHHHHHHHHHHhccCCCcchHHHHHhcCccccccchhHHhhhH
Q 005044 354 AFALGRLAQDMHNQ-AGIAHNGGLVPLLKLLDS-KNGSLQHNAAFALYGLADNEDNVADFIRVGGVQKLQDGEFIVQATK 431 (717)
Q Consensus 354 ~~~L~~l~~~~~~~-~~l~~~~~l~~L~~ll~~-~~~~v~~~a~~~L~~l~~~~~~~~~l~~~~~i~~L~~~~~~~~~~~ 431 (717)
+.+++.++.+-... ..-......+.|+..+.+ .++.|+..|+.++.|++..... ..++ +
T Consensus 410 ~naigQ~stdl~p~iqk~~~e~l~~aL~~~ld~~~~~rV~ahAa~al~nf~E~~~~--~~l~-----p------------ 470 (1075)
T KOG2171|consen 410 LNAIGQMSTDLQPEIQKKHHERLPPALIALLDSTQNVRVQAHAAAALVNFSEECDK--SILE-----P------------ 470 (1075)
T ss_pred HHHHHhhhhhhcHHHHHHHHHhccHHHHHHhcccCchHHHHHHHHHHHHHHHhCcH--HHHH-----H------------
Confidence 99999999864432 223334455567777765 5779999999999999854322 1111 1
Q ss_pred HHHHHHHHHHHHHhhhchHH-HHHHHHhhcchhHHHHHHHHHHhccCCCCCceeeecCCCHHHHHHHhcCCC-chhhhhh
Q 005044 432 DCVAKTLKRLEEKIHGRVLN-HLLYLMRVAEKGVQRRVALALAHLCSPDDQRTIFIDGGGLELLLGLLGSTN-PKQQLDG 509 (717)
Q Consensus 432 ~~~~~~~~~l~~~~~~~~~~-~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~~~~~~l~~L~~ll~~~~-~~v~~~a 509 (717)
+-.+++. .+.-++.++.+.++..++.+|+..+...+....-.-.-.+|.|...+...+ .+.+.-.
T Consensus 471 -------------YLd~lm~~~l~~L~~~~~~~v~e~vvtaIasvA~AA~~~F~pY~d~~Mp~L~~~L~n~~~~d~r~Lr 537 (1075)
T KOG2171|consen 471 -------------YLDGLMEKKLLLLLQSSKPYVQEQAVTAIASVADAAQEKFIPYFDRLMPLLKNFLQNADDKDLRELR 537 (1075)
T ss_pred -------------HHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHhhhhHhHHHHHHHHHHHHHhCCCchhhHHHH
Confidence 1112444 344456677899999999999999866554444344556888888888755 4444433
Q ss_pred HH
Q 005044 510 AV 511 (717)
Q Consensus 510 ~~ 511 (717)
..
T Consensus 538 gk 539 (1075)
T KOG2171|consen 538 GK 539 (1075)
T ss_pred hh
Confidence 33
No 42
>cd00020 ARM Armadillo/beta-catenin-like repeats. An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumor suppressor protein, and a number of other proteins. ARM has been implicated in mediating protein-protein interactions, but no common features among the target proteins recognized by the ARM repeats have been identified; related to the HEAT domain; three consecutive copies of the repeat are represented by this alignment model.
Probab=99.34 E-value=3.7e-11 Score=103.06 Aligned_cols=119 Identities=28% Similarity=0.409 Sum_probs=110.7
Q ss_pred HHHhcCCHHHHHHHHcCCCHHHHHHHHHHHHHhhcCChHHHHHHHHcCChHHHHHhhccCChHHHHHHHHHHHHHhcCCh
Q 005044 244 QIVECNALPTLILMLRSEDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLSSCCSESQREAALLLGQFAATDS 323 (717)
Q Consensus 244 ~~~~~g~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~l~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~ 323 (717)
.+++.|+++.+++++.+++..++..++++|.+++..++.....+.+.|+++.+++++.++++.++..++++|++++...+
T Consensus 2 ~~~~~~~i~~l~~~l~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~v~~~a~~~L~~l~~~~~ 81 (120)
T cd00020 2 AVIQAGGLPALVSLLSSSDENVQREAAWALSNLSAGNNDNIQAVVEAGGLPALVQLLKSEDEEVVKAALWALRNLAAGPE 81 (120)
T ss_pred hHHHcCChHHHHHHHHcCCHHHHHHHHHHHHHHhcCCHHHHHHHHHCCChHHHHHHHhCCCHHHHHHHHHHHHHHccCcH
Confidence 45688999999999999999999999999999998888888899999999999999999999999999999999998777
Q ss_pred hhHHHHHhcCChHHHHHHhcCCCHHHHHHHHHHHHHhhc
Q 005044 324 DCKVHIVQRGAVRPLIEMLQSPDVQLREMSAFALGRLAQ 362 (717)
Q Consensus 324 ~~~~~l~~~~~l~~L~~~l~~~~~~v~~~a~~~L~~l~~ 362 (717)
.....+.+.|+++.+++++.+.+..+++.++++|.+|+.
T Consensus 82 ~~~~~~~~~g~l~~l~~~l~~~~~~~~~~a~~~l~~l~~ 120 (120)
T cd00020 82 DNKLIVLEAGGVPKLVNLLDSSNEDIQKNATGALSNLAS 120 (120)
T ss_pred HHHHHHHHCCChHHHHHHHhcCCHHHHHHHHHHHHHhhC
Confidence 777888899999999999999999999999999999873
No 43
>cd00020 ARM Armadillo/beta-catenin-like repeats. An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumor suppressor protein, and a number of other proteins. ARM has been implicated in mediating protein-protein interactions, but no common features among the target proteins recognized by the ARM repeats have been identified; related to the HEAT domain; three consecutive copies of the repeat are represented by this alignment model.
Probab=99.34 E-value=3.5e-11 Score=103.21 Aligned_cols=118 Identities=36% Similarity=0.499 Sum_probs=110.3
Q ss_pred HHHhcCCcHHHHHhhcCCCHHHHHHHHHHHHHhhccChhhHHHHHhcCCHHHHHHHHcCCCHHHHHHHHHHHHHhhcCCh
Q 005044 202 RVRMEGGIPPLVELLEFTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSEDSAIHYEAVGVIGNLVHSSP 281 (717)
Q Consensus 202 ~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~ 281 (717)
.+.+.|+++.+++++.++++.++..++++|.+++.+.++....+.+.|+++.+++++.++++.++..++++|++++...+
T Consensus 2 ~~~~~~~i~~l~~~l~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~v~~~a~~~L~~l~~~~~ 81 (120)
T cd00020 2 AVIQAGGLPALVSLLSSSDENVQREAAWALSNLSAGNNDNIQAVVEAGGLPALVQLLKSEDEEVVKAALWALRNLAAGPE 81 (120)
T ss_pred hHHHcCChHHHHHHHHcCCHHHHHHHHHHHHHHhcCCHHHHHHHHHCCChHHHHHHHhCCCHHHHHHHHHHHHHHccCcH
Confidence 35678999999999999999999999999999998778999999999999999999999999999999999999998877
Q ss_pred HHHHHHHHcCChHHHHHhhccCChHHHHHHHHHHHHHh
Q 005044 282 NIKKEVLAAGALQPVIGLLSSCCSESQREAALLLGQFA 319 (717)
Q Consensus 282 ~~~~~~~~~g~l~~L~~ll~~~~~~~~~~a~~~L~~l~ 319 (717)
.....+...|+++.+++++.+.+.++++.+++++.+++
T Consensus 82 ~~~~~~~~~g~l~~l~~~l~~~~~~~~~~a~~~l~~l~ 119 (120)
T cd00020 82 DNKLIVLEAGGVPKLVNLLDSSNEDIQKNATGALSNLA 119 (120)
T ss_pred HHHHHHHHCCChHHHHHHHhcCCHHHHHHHHHHHHHhh
Confidence 77788888999999999999999999999999999986
No 44
>KOG2023 consensus Nuclear transport receptor Karyopherin-beta2/Transportin (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.34 E-value=4.8e-11 Score=121.28 Aligned_cols=353 Identities=17% Similarity=0.119 Sum_probs=226.6
Q ss_pred ChHHHHHhhcCCCCCccccCCCccchHHHhHHHHHHHHhc-CChhhHHHHHhC----CChHHHHHHHhccccCCCccchh
Q 005044 105 AVPALVKHLQAPPTSEADRNLKPFEHEVEKGSAFALGLLA-VKPEHQQLIVDN----GALSHLVNLLKRHMDSNCSRAVN 179 (717)
Q Consensus 105 ~i~~L~~lL~~~~~~~~~~~~~~~~~~v~~~a~~~L~~l~-~~~~~~~~~~~~----~~i~~L~~lL~~~~~~~~~~~~~ 179 (717)
++|.|.++|.+++. ...+.|..+|.+++ ++.+.-+.-.-. -.+|.++.+.++..+
T Consensus 129 lLp~L~~~L~s~d~------------n~~EgA~~AL~KIcEDsa~~lds~~~~rpl~~mipkfl~f~~h~sp-------- 188 (885)
T KOG2023|consen 129 LLPQLCELLDSPDY------------NTCEGAFGALQKICEDSAQFLDSDVLTRPLNIMIPKFLQFFKHPSP-------- 188 (885)
T ss_pred HHHHHHHHhcCCcc------------cccchhHHHHHHHHhhhHHHHhhhcccCchHHhHHHHHHHHhCCCh--------
Confidence 57899999999887 67889999999999 665543221111 247888888888866
Q ss_pred HHHHHHHHHHHHHhhcCchhhhHHHhcCCcHHHHHhhcCCCHHHHHHHHHHHHHhhccChhhHHHHHhcCCHHHHHHHHc
Q 005044 180 SVIRRAADAITNLAHENSSIKTRVRMEGGIPPLVELLEFTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLR 259 (717)
Q Consensus 180 ~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~g~i~~L~~ll~ 259 (717)
.++..|+.++..+.......- ...-..++..+..+..+.+++||...|.+|..|....++... -.-.++++.+++..+
T Consensus 189 kiRs~A~~cvNq~i~~~~qal-~~~iD~Fle~lFalanD~~~eVRk~vC~alv~Llevr~dkl~-phl~~IveyML~~tq 266 (885)
T KOG2023|consen 189 KIRSHAVGCVNQFIIIQTQAL-YVHIDKFLEILFALANDEDPEVRKNVCRALVFLLEVRPDKLV-PHLDNIVEYMLQRTQ 266 (885)
T ss_pred hHHHHHHhhhhheeecCcHHH-HHHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHhcHHhcc-cchHHHHHHHHHHcc
Confidence 899999999887765333211 111224567777777889999999999999999864433211 112467888888888
Q ss_pred CCCHHHHHHHHHHHHHhhcCChHHHHHHHH--cCChHHHHHhhccC----------------------------------
Q 005044 260 SEDSAIHYEAVGVIGNLVHSSPNIKKEVLA--AGALQPVIGLLSSC---------------------------------- 303 (717)
Q Consensus 260 ~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~--~g~l~~L~~ll~~~---------------------------------- 303 (717)
+.+.+|..+||.....++... .++..+.. ..++|.|++-+...
T Consensus 267 d~dE~VALEACEFwla~aeqp-i~~~~L~p~l~kliPvLl~~M~Ysd~D~~LL~~~eeD~~vpDreeDIkPRfhksk~~~ 345 (885)
T KOG2023|consen 267 DVDENVALEACEFWLALAEQP-ICKEVLQPYLDKLIPVLLSGMVYSDDDIILLKNNEEDESVPDREEDIKPRFHKSKEHG 345 (885)
T ss_pred CcchhHHHHHHHHHHHHhcCc-CcHHHHHHHHHHHHHHHHccCccccccHHHhcCccccccCCchhhhccchhhhchhcc
Confidence 999999999999999998764 33332222 35677776533210
Q ss_pred ----------------------ChHHHHHHHHHHHHHhcCChhhHHHHHhcCChHHHHHHhcCCCHHHHHHHHHHHHHhh
Q 005044 304 ----------------------CSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQSPDVQLREMSAFALGRLA 361 (717)
Q Consensus 304 ----------------------~~~~~~~a~~~L~~l~~~~~~~~~~l~~~~~l~~L~~~l~~~~~~v~~~a~~~L~~l~ 361 (717)
++.+|+..+.+|.-++.- .+..+. .-++|.|-+.|.+++..+|++++.+|+.++
T Consensus 346 ~~~~~~~eDdddDe~DDdD~~~dWNLRkCSAAaLDVLanv---f~~elL-~~l~PlLk~~L~~~~W~vrEagvLAlGAIA 421 (885)
T KOG2023|consen 346 NGEDADDEDDDDDEDDDDDAFSDWNLRKCSAAALDVLANV---FGDELL-PILLPLLKEHLSSEEWKVREAGVLALGAIA 421 (885)
T ss_pred CccccccccccccccccccccccccHhhccHHHHHHHHHh---hHHHHH-HHHHHHHHHHcCcchhhhhhhhHHHHHHHH
Confidence 023455445555555421 111111 124555666666788999999999999999
Q ss_pred cCCCCchhhHhcCChHHHHHhhcCCChhHHHHHHHHHHhccCC--CcchHHHHHhcCccccccchhHHhhhHHHHHHHHH
Q 005044 362 QDMHNQAGIAHNGGLVPLLKLLDSKNGSLQHNAAFALYGLADN--EDNVADFIRVGGVQKLQDGEFIVQATKDCVAKTLK 439 (717)
Q Consensus 362 ~~~~~~~~l~~~~~l~~L~~ll~~~~~~v~~~a~~~L~~l~~~--~~~~~~l~~~~~i~~L~~~~~~~~~~~~~~~~~~~ 439 (717)
.+.-..-.-.-...++.++++|.++.+-||..+||+|...+.. .+....+.
T Consensus 422 EGcM~g~~p~LpeLip~l~~~L~DKkplVRsITCWTLsRys~wv~~~~~~~~f--------------------------- 474 (885)
T KOG2023|consen 422 EGCMQGFVPHLPELIPFLLSLLDDKKPLVRSITCWTLSRYSKWVVQDSRDEYF--------------------------- 474 (885)
T ss_pred HHHhhhcccchHHHHHHHHHHhccCccceeeeeeeeHhhhhhhHhcCChHhhh---------------------------
Confidence 7543221111123577789999999999999999999988752 11111111
Q ss_pred HHHHHhhhchHHHHHHHHhhcchhHHHHHHHHHHhccCCCCCceeeecCCCHHHHHHHhc---CCCchhhhhhHHHHHHh
Q 005044 440 RLEEKIHGRVLNHLLYLMRVAEKGVQRRVALALAHLCSPDDQRTIFIDGGGLELLLGLLG---STNPKQQLDGAVALFKL 516 (717)
Q Consensus 440 ~l~~~~~~~~~~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~~~~~~l~~L~~ll~---~~~~~v~~~a~~~l~~L 516 (717)
..++..|++.+-+++..||++|+.++..+-......-...-...+..|+..+. .+|--+-..|...|..-
T Consensus 475 -------~pvL~~ll~~llD~NK~VQEAAcsAfAtleE~A~~eLVp~l~~IL~~l~~af~kYQ~KNLlILYDAIgtlAds 547 (885)
T KOG2023|consen 475 -------KPVLEGLLRRLLDSNKKVQEAACSAFATLEEEAGEELVPYLEYILDQLVFAFGKYQKKNLLILYDAIGTLADS 547 (885)
T ss_pred -------HHHHHHHHHHHhcccHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHHHhhcceehHHHHHHHHHHH
Confidence 12556677778889999999999999888544221111111122333333222 25555566676666655
Q ss_pred hh
Q 005044 517 AN 518 (717)
Q Consensus 517 ~~ 518 (717)
..
T Consensus 548 vg 549 (885)
T KOG2023|consen 548 VG 549 (885)
T ss_pred HH
Confidence 53
No 45
>KOG2171 consensus Karyopherin (importin) beta 3 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.34 E-value=1.2e-09 Score=119.26 Aligned_cols=382 Identities=20% Similarity=0.192 Sum_probs=247.7
Q ss_pred HHHHHHHHHHHHHhhcC--hhhHHHHHhCCChHHHHHhhcCCCCCccccCCCccchHHHhHHHHHHHHhcCChhhHHHHH
Q 005044 77 RAAAKRATHVLAELAKN--EEVVNWIVEGGAVPALVKHLQAPPTSEADRNLKPFEHEVEKGSAFALGLLAVKPEHQQLIV 154 (717)
Q Consensus 77 ~~~~~~a~~~L~~l~~~--~~~~~~~~~~g~i~~L~~lL~~~~~~~~~~~~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~ 154 (717)
+.++..-+.++..++++ ++.. -+.++.|++-.++.+. ..|+.|+.+|..+...-.++
T Consensus 94 ~~vr~k~~dviAeia~~~l~e~W-----Pell~~L~q~~~S~~~------------~~rE~al~il~s~~~~~~~~---- 152 (1075)
T KOG2171|consen 94 PSVRHKLADVIAEIARNDLPEKW-----PELLQFLFQSTKSPNP------------SLRESALLILSSLPETFGNT---- 152 (1075)
T ss_pred hHHHHHHHHHHHHHHHhccccch-----HHHHHHHHHHhcCCCc------------chhHHHHHHHHhhhhhhccc----
Confidence 34566666666666662 2211 1234555555555555 89999999999998222221
Q ss_pred hCCChHHHHHHHhccccCCCccchhHHHHHHHHHHHHHhhcCchhhhHHHh-cCCcHHHHHhh----cCCCHHHHHHHHH
Q 005044 155 DNGALSHLVNLLKRHMDSNCSRAVNSVIRRAADAITNLAHENSSIKTRVRM-EGGIPPLVELL----EFTDTKVQRAAAG 229 (717)
Q Consensus 155 ~~~~i~~L~~lL~~~~~~~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~-~~~i~~L~~ll----~~~~~~v~~~a~~ 229 (717)
..+.++.+..++...-.++.. .++..+++++..++...+.+...... ...+|.++..+ ..++......++.
T Consensus 153 ~~~~~~~l~~lf~q~~~d~s~----~vr~~a~rA~~a~~~~~~~~~~~~~~~~~llP~~l~vl~~~i~~~d~~~a~~~l~ 228 (1075)
T KOG2171|consen 153 LQPHLDDLLRLFSQTMTDPSS----PVRVAAVRALGAFAEYLENNKSEVDKFRDLLPSLLNVLQEVIQDGDDDAAKSALE 228 (1075)
T ss_pred cchhHHHHHHHHHHhccCCcc----hHHHHHHHHHHHHHHHhccchHHHHHHHHHhHHHHHHhHhhhhccchHHHHHHHH
Confidence 234566666666655433222 68899999999888755422222111 23566665554 4567777888999
Q ss_pred HHHHhhccChhhHHHHHhcCCHHHHHHHHcCC--CHHHHHHHHHHHHHhhcCChHHHHHH--HHcCChHHHHHhhccCC-
Q 005044 230 ALRTLAFKNDENKNQIVECNALPTLILMLRSE--DSAIHYEAVGVIGNLVHSSPNIKKEV--LAAGALQPVIGLLSSCC- 304 (717)
Q Consensus 230 ~L~~L~~~~~~~~~~~~~~g~i~~L~~ll~~~--~~~v~~~a~~~L~~l~~~~~~~~~~~--~~~g~l~~L~~ll~~~~- 304 (717)
+|..++...+......... ++...+...++. ++.+|..|+.+|..++..-+...+.. .-..+++.++.++.+..
T Consensus 229 ~l~El~e~~pk~l~~~l~~-ii~~~l~Ia~n~~l~~~~R~~ALe~ivs~~e~Ap~~~k~~~~~~~~lv~~~l~~mte~~~ 307 (1075)
T KOG2171|consen 229 ALIELLESEPKLLRPHLSQ-IIQFSLEIAKNKELENSIRHLALEFLVSLSEYAPAMCKKLALLGHTLVPVLLAMMTEEED 307 (1075)
T ss_pred HHHHHHhhchHHHHHHHHH-HHHHHHHHhhcccccHHHHHHHHHHHHHHHHhhHHHhhhchhhhccHHHHHHHhcCCccc
Confidence 9999987555554444332 566666666654 67999999999999987644332222 22335666666654311
Q ss_pred ---------------hHHHHHHHHHHHHHhcCChhhHHHHHhcCChHHHHHHhcCCCHHHHHHHHHHHHHhhcCCCCchh
Q 005044 305 ---------------SESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQSPDVQLREMSAFALGRLAQDMHNQAG 369 (717)
Q Consensus 305 ---------------~~~~~~a~~~L~~l~~~~~~~~~~l~~~~~l~~L~~~l~~~~~~v~~~a~~~L~~l~~~~~~~~~ 369 (717)
......|..+|..++.+-+.. .+-.-+++.+-.++++.++.-|.+++.+|+.++.+....-.
T Consensus 308 D~ew~~~d~~ded~~~~~~~~A~~~lDrlA~~L~g~---~v~p~~~~~l~~~l~S~~w~~R~AaL~Als~i~EGc~~~m~ 384 (1075)
T KOG2171|consen 308 DDEWSNEDDLDEDDEETPYRAAEQALDRLALHLGGK---QVLPPLFEALEAMLQSTEWKERHAALLALSVIAEGCSDVMI 384 (1075)
T ss_pred chhhccccccccccccCcHHHHHHHHHHHHhcCChh---hehHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHcccHHHHH
Confidence 123456677777776543221 11122467777788999999999999999999986543222
Q ss_pred hHhcCChHHHHHhhcCCChhHHHHHHHHHHhccCCCcchHHHHHhcCccccccchhHHhhhHHHHHHHHHHHHHHhhhch
Q 005044 370 IAHNGGLVPLLKLLDSKNGSLQHNAAFALYGLADNEDNVADFIRVGGVQKLQDGEFIVQATKDCVAKTLKRLEEKIHGRV 449 (717)
Q Consensus 370 l~~~~~l~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~l~~~~~i~~L~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 449 (717)
-.-..+++.++..+.++++.||..|+.+++.++.+-.. .+++..+..+
T Consensus 385 ~~l~~Il~~Vl~~l~DphprVr~AA~naigQ~stdl~p--------------------------------~iqk~~~e~l 432 (1075)
T KOG2171|consen 385 GNLPKILPIVLNGLNDPHPRVRYAALNAIGQMSTDLQP--------------------------------EIQKKHHERL 432 (1075)
T ss_pred HHHHHHHHHHHhhcCCCCHHHHHHHHHHHHhhhhhhcH--------------------------------HHHHHHHHhc
Confidence 22235567778888999999999999999999854221 2334456667
Q ss_pred HHHHHHHHhhc-chhHHHHHHHHHHhccCCCCCce-eeecCCCHH-HHHHHhcCCCchhhhhhHHHHHHhhhc
Q 005044 450 LNHLLYLMRVA-EKGVQRRVALALAHLCSPDDQRT-IFIDGGGLE-LLLGLLGSTNPKQQLDGAVALFKLANK 519 (717)
Q Consensus 450 ~~~L~~ll~~~-~~~v~~~a~~aL~~l~~~~~~~~-~~~~~~~l~-~L~~ll~~~~~~v~~~a~~~l~~L~~~ 519 (717)
.+.|+..+.+. ++.++..|+.++-|++..-.... .-+-.+.+. .|..+++++.+.+|+.++.+|...+..
T Consensus 433 ~~aL~~~ld~~~~~rV~ahAa~al~nf~E~~~~~~l~pYLd~lm~~~l~~L~~~~~~~v~e~vvtaIasvA~A 505 (1075)
T KOG2171|consen 433 PPALIALLDSTQNVRVQAHAAAALVNFSEECDKSILEPYLDGLMEKKLLLLLQSSKPYVQEQAVTAIASVADA 505 (1075)
T ss_pred cHHHHHHhcccCchHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHH
Confidence 88899988876 77999999999999976533211 111123444 455567789999999999999888764
No 46
>cd00256 VATPase_H VATPase_H, regulatory vacuolar ATP synthase subunit H (Vma13p); activation component of the peripheral V1 complex of V-ATPase, a heteromultimeric enzyme which uses ATP to actively transport protons into organelles and extracellular compartments. The topology is that of a superhelical spiral, in part the geometry is similar to superhelices composed of armadillo repeat motifs, as found in importins for example.
Probab=99.32 E-value=2.6e-10 Score=115.54 Aligned_cols=348 Identities=13% Similarity=0.135 Sum_probs=236.6
Q ss_pred CChHHHHHHHhccccCCCccchhHHHHHHHHHHHHHhhcCchhhhHHHhc-----CCcHHHHHhhcCCCHHHHHHHHHHH
Q 005044 157 GALSHLVNLLKRHMDSNCSRAVNSVIRRAADAITNLAHENSSIKTRVRME-----GGIPPLVELLEFTDTKVQRAAAGAL 231 (717)
Q Consensus 157 ~~i~~L~~lL~~~~~~~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~-----~~i~~L~~ll~~~~~~v~~~a~~~L 231 (717)
..+..++++++..... ++.++.+..+..+...++..-..+.+. +....++.+|..++.-+...++..|
T Consensus 53 ~y~~~~l~ll~~~~~~-------d~vqyvL~Li~dll~~~~~~~~~f~~~~~~~~~~~~~fl~lL~~~d~~i~~~a~~iL 125 (429)
T cd00256 53 QYVKTFVNLLSQIDKD-------DTVRYVLTLIDDMLQEDDTRVKLFHDDALLKKKTWEPFFNLLNRQDQFIVHMSFSIL 125 (429)
T ss_pred HHHHHHHHHHhccCcH-------HHHHHHHHHHHHHHHhchHHHHHHHHHhhccccchHHHHHHHcCCchhHHHHHHHHH
Confidence 3466777777765553 888888888888888776655555543 4556777888888999999999999
Q ss_pred HHhhccChhhHHHHHhcCCHHHHHHHHcCC-CHHHHHHHHHHHHHhhcCChHHHHHHHHcCChHHHHHhhccC--ChHHH
Q 005044 232 RTLAFKNDENKNQIVECNALPTLILMLRSE-DSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLSSC--CSESQ 308 (717)
Q Consensus 232 ~~L~~~~~~~~~~~~~~g~i~~L~~ll~~~-~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~l~~L~~ll~~~--~~~~~ 308 (717)
..+....+.........-.++.+...++++ +...+..++.++..+... +..+..+.+.++++.|+.+|+.. +..+.
T Consensus 126 t~l~~~~~~~~~~~~l~~~~~~l~~~l~~~~~~~~~~~~v~~L~~LL~~-~~~R~~f~~~~~v~~L~~~L~~~~~~~Ql~ 204 (429)
T cd00256 126 AKLACFGLAKMEGSDLDYYFNWLKEQLNNITNNDYVQTAARCLQMLLRV-DEYRFAFVLADGVPTLVKLLSNATLGFQLQ 204 (429)
T ss_pred HHHHhcCccccchhHHHHHHHHHHHHhhccCCcchHHHHHHHHHHHhCC-chHHHHHHHccCHHHHHHHHhhccccHHHH
Confidence 999764333222111111334555666654 466777888999998765 56678888889999999999764 35788
Q ss_pred HHHHHHHHHHhcCChhhHHHHHhcCChHHHHHHhcC-CCHHHHHHHHHHHHHhhcCCC-------CchhhHhcCChHHHH
Q 005044 309 REAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQS-PDVQLREMSAFALGRLAQDMH-------NQAGIAHNGGLVPLL 380 (717)
Q Consensus 309 ~~a~~~L~~l~~~~~~~~~~l~~~~~l~~L~~~l~~-~~~~v~~~a~~~L~~l~~~~~-------~~~~l~~~~~l~~L~ 380 (717)
..++.+++-++ .++.........++++.++++++. ....+.+-++.+|.|+...+. ....++..|. +.++
T Consensus 205 Y~~ll~lWlLS-F~~~~~~~~~~~~~i~~l~~i~k~s~KEKvvRv~l~~l~Nll~~~~~~~~~~~~~~~mv~~~l-~~~l 282 (429)
T cd00256 205 YQSIFCIWLLT-FNPHAAEVLKRLSLIQDLSDILKESTKEKVIRIVLAIFRNLISKRVDREVKKTAALQMVQCKV-LKTL 282 (429)
T ss_pred HHHHHHHHHHh-ccHHHHHhhccccHHHHHHHHHHhhhhHHHHHHHHHHHHHHhhcccccchhhhHHHHHHHcCh-HHHH
Confidence 99999999996 445555566678999999999976 567788889999999997431 1234555554 4455
Q ss_pred HhhcC---CChhHHHHHH-------HHHHhccCCCcchHHHHHhcCccccccchhHHhhhHHHHHHHHHHHHHHhhhchH
Q 005044 381 KLLDS---KNGSLQHNAA-------FALYGLADNEDNVADFIRVGGVQKLQDGEFIVQATKDCVAKTLKRLEEKIHGRVL 450 (717)
Q Consensus 381 ~ll~~---~~~~v~~~a~-------~~L~~l~~~~~~~~~l~~~~~i~~L~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 450 (717)
+.|.. .|+++....- ..+..++..+++..++.. |-++ .+-.+ ....-+.+...++.. -...++
T Consensus 283 ~~L~~rk~~DedL~edl~~L~e~L~~~~k~ltsfD~Y~~El~s-g~L~----WSp~H-~se~FW~EN~~kf~~-~~~~ll 355 (429)
T cd00256 283 QSLEQRKYDDEDLTDDLKFLTEELKNSVQDLSSFDEYKSELRS-GRLH----WSPVH-KSEKFWRENADRLNE-KNYELL 355 (429)
T ss_pred HHHhcCCCCcHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHhc-CCcc----CCCCC-CCchHHHHHHHHHHh-cchHHH
Confidence 55533 3555544322 233444444455444333 3221 11111 111122223333322 235688
Q ss_pred HHHHHHHh-hcchhHHHHHHHHHHhccCCC-CCceeeecCCCHHHHHHHhcCCCchhhhhhHHHHHHhhhccc
Q 005044 451 NHLLYLMR-VAEKGVQRRVALALAHLCSPD-DQRTIFIDGGGLELLLGLLGSTNPKQQLDGAVALFKLANKAT 521 (717)
Q Consensus 451 ~~L~~ll~-~~~~~v~~~a~~aL~~l~~~~-~~~~~~~~~~~l~~L~~ll~~~~~~v~~~a~~~l~~L~~~~~ 521 (717)
..|+++|. +.++.+...||.=|+.++..- .++..+.+.|+-..+++++.++|++||.+|..++..|.-+.|
T Consensus 356 k~L~~iL~~s~d~~~laVAc~Dige~vr~~P~gr~i~~~lg~K~~vM~Lm~h~d~~Vr~eAL~avQklm~~~w 428 (429)
T cd00256 356 KILIHLLETSVDPIILAVACHDIGEYVRHYPRGKDVVEQLGGKQRVMRLLNHEDPNVRYEALLAVQKLMVHNW 428 (429)
T ss_pred HHHHHHHhcCCCcceeehhhhhHHHHHHHCccHHHHHHHcCcHHHHHHHhcCCCHHHHHHHHHHHHHHHHhcC
Confidence 99999995 457888888999999998764 467677778999999999999999999999999998866543
No 47
>cd00256 VATPase_H VATPase_H, regulatory vacuolar ATP synthase subunit H (Vma13p); activation component of the peripheral V1 complex of V-ATPase, a heteromultimeric enzyme which uses ATP to actively transport protons into organelles and extracellular compartments. The topology is that of a superhelical spiral, in part the geometry is similar to superhelices composed of armadillo repeat motifs, as found in importins for example.
Probab=99.29 E-value=3.7e-09 Score=107.24 Aligned_cols=304 Identities=13% Similarity=0.186 Sum_probs=209.6
Q ss_pred HHHHHHHHHHHHhhc-ChhhHHHHHhC-----CChHHHHHhhcCCCCCccccCCCccchHHHhHHHHHHHHhc-CChhhH
Q 005044 78 AAAKRATHVLAELAK-NEEVVNWIVEG-----GAVPALVKHLQAPPTSEADRNLKPFEHEVEKGSAFALGLLA-VKPEHQ 150 (717)
Q Consensus 78 ~~~~~a~~~L~~l~~-~~~~~~~~~~~-----g~i~~L~~lL~~~~~~~~~~~~~~~~~~v~~~a~~~L~~l~-~~~~~~ 150 (717)
++....+..+..+.. ++.....+.+. +....++.+|..++. -+...++..|+.+. .++...
T Consensus 69 d~vqyvL~Li~dll~~~~~~~~~f~~~~~~~~~~~~~fl~lL~~~d~------------~i~~~a~~iLt~l~~~~~~~~ 136 (429)
T cd00256 69 DTVRYVLTLIDDMLQEDDTRVKLFHDDALLKKKTWEPFFNLLNRQDQ------------FIVHMSFSILAKLACFGLAKM 136 (429)
T ss_pred HHHHHHHHHHHHHHHhchHHHHHHHHHhhccccchHHHHHHHcCCch------------hHHHHHHHHHHHHHhcCcccc
Confidence 357778888888877 56555555553 466778888887665 89999999999998 333321
Q ss_pred HHHHhCCChHHHHHHHhccccCCCccchhHHHHHHHHHHHHHhhcCchhhhHHHhcCCcHHHHHhhcCC--CHHHHHHHH
Q 005044 151 QLIVDNGALSHLVNLLKRHMDSNCSRAVNSVIRRAADAITNLAHENSSIKTRVRMEGGIPPLVELLEFT--DTKVQRAAA 228 (717)
Q Consensus 151 ~~~~~~~~i~~L~~lL~~~~~~~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~--~~~v~~~a~ 228 (717)
......-.++.+...++..++. ..+..++.+|..+.. .+..|..+.+.++++.|+.+|+.. +..++..++
T Consensus 137 ~~~~l~~~~~~l~~~l~~~~~~-------~~~~~~v~~L~~LL~-~~~~R~~f~~~~~v~~L~~~L~~~~~~~Ql~Y~~l 208 (429)
T cd00256 137 EGSDLDYYFNWLKEQLNNITNN-------DYVQTAARCLQMLLR-VDEYRFAFVLADGVPTLVKLLSNATLGFQLQYQSI 208 (429)
T ss_pred chhHHHHHHHHHHHHhhccCCc-------chHHHHHHHHHHHhC-CchHHHHHHHccCHHHHHHHHhhccccHHHHHHHH
Confidence 1111011233445555543321 677888899999988 677888888899999999999762 568999999
Q ss_pred HHHHHhhccChhhHHHHHhcCCHHHHHHHHcCC-CHHHHHHHHHHHHHhhcCC------hHHHHHHHHcCChHHHHHhhc
Q 005044 229 GALRTLAFKNDENKNQIVECNALPTLILMLRSE-DSAIHYEAVGVIGNLVHSS------PNIKKEVLAAGALQPVIGLLS 301 (717)
Q Consensus 229 ~~L~~L~~~~~~~~~~~~~~g~i~~L~~ll~~~-~~~v~~~a~~~L~~l~~~~------~~~~~~~~~~g~l~~L~~ll~ 301 (717)
-+++-|+. +++....+...++++.++++++.. ...+.+-++.+|.|+...+ ......++..|+++.+-.+..
T Consensus 209 l~lWlLSF-~~~~~~~~~~~~~i~~l~~i~k~s~KEKvvRv~l~~l~Nll~~~~~~~~~~~~~~~mv~~~l~~~l~~L~~ 287 (429)
T cd00256 209 FCIWLLTF-NPHAAEVLKRLSLIQDLSDILKESTKEKVIRIVLAIFRNLISKRVDREVKKTAALQMVQCKVLKTLQSLEQ 287 (429)
T ss_pred HHHHHHhc-cHHHHHhhccccHHHHHHHHHHhhhhHHHHHHHHHHHHHHhhcccccchhhhHHHHHHHcChHHHHHHHhc
Confidence 99999997 555666677789999999999864 6688999999999997643 123455666677665555544
Q ss_pred c--CChHHHHHHHH-------HHHHHhcC-------------------Ch----hhHHHHHhc--CChHHHHHHhc-CCC
Q 005044 302 S--CCSESQREAAL-------LLGQFAAT-------------------DS----DCKVHIVQR--GAVRPLIEMLQ-SPD 346 (717)
Q Consensus 302 ~--~~~~~~~~a~~-------~L~~l~~~-------------------~~----~~~~~l~~~--~~l~~L~~~l~-~~~ 346 (717)
. .++++....-. .+..+++. ++ ++...+.+. .++..|+++|. +.|
T Consensus 288 rk~~DedL~edl~~L~e~L~~~~k~ltsfD~Y~~El~sg~L~WSp~H~se~FW~EN~~kf~~~~~~llk~L~~iL~~s~d 367 (429)
T cd00256 288 RKYDDEDLTDDLKFLTEELKNSVQDLSSFDEYKSELRSGRLHWSPVHKSEKFWRENADRLNEKNYELLKILIHLLETSVD 367 (429)
T ss_pred CCCCcHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHhcCCccCCCCCCCchHHHHHHHHHHhcchHHHHHHHHHHhcCCC
Confidence 3 23443332111 11112110 01 122223332 35678889984 467
Q ss_pred HHHHHHHHHHHHHhhcCCCCchh-hHhcCChHHHHHhhcCCChhHHHHHHHHHHhcc
Q 005044 347 VQLREMSAFALGRLAQDMHNQAG-IAHNGGLVPLLKLLDSKNGSLQHNAAFALYGLA 402 (717)
Q Consensus 347 ~~v~~~a~~~L~~l~~~~~~~~~-l~~~~~l~~L~~ll~~~~~~v~~~a~~~L~~l~ 402 (717)
+.+..-||.=++.++++.+.+.. +-+.|+=..+++++.+.+++|+..|+.++..|.
T Consensus 368 ~~~laVAc~Dige~vr~~P~gr~i~~~lg~K~~vM~Lm~h~d~~Vr~eAL~avQklm 424 (429)
T cd00256 368 PIILAVACHDIGEYVRHYPRGKDVVEQLGGKQRVMRLLNHEDPNVRYEALLAVQKLM 424 (429)
T ss_pred cceeehhhhhHHHHHHHCccHHHHHHHcCcHHHHHHHhcCCCHHHHHHHHHHHHHHH
Confidence 88888899999999997665544 455687777999999999999999999998774
No 48
>PF01602 Adaptin_N: Adaptin N terminal region; InterPro: IPR002553 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. Clathrin coats contain both clathrin and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors []. All AP complexes are heterotetramers composed of two large subunits (adaptins), a medium subunit (mu) and a small subunit (sigma). Each subunit has a specific function. Adaptin subunits recognise and bind to clathrin through their hinge region (clathrin box), and recruit accessory proteins that modulate AP function through their C-terminal appendage domains. By contrast, GGAs are monomers composed of four domains, which have functions similar to AP subunits: an N-terminal VHS (Vps27p/Hrs/Stam) domain, a GAT (GGA and Tom1) domain, a hinge region, and a C-terminal GAE (gamma-adaptin ear) domain. The GAE domain is similar to the AP gamma-adaptin ear domain, being responsible for the recruitment of accessory proteins that regulate clathrin-mediated endocytosis []. While clathrin mediates endocytic protein transport from ER to Golgi, coatomers (COPI, COPII) primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the N-terminal domain of various adaptins from different AP clathrin adaptor complexes (including AP1, AP2, AP3 and AP4), and from the beta and gamma subunits of various coatomer (COP) adaptors. This domain has a 2-layer alpha/alpha fold that forms a right-handed superhelix, and is a member of the ARM repeat superfamily []. The N-terminal region of the various AP adaptor proteins share strong sequence identity; by contrast, the C-terminal domains of different adaptins share similar structural folds, but have little sequence identity []. It has been proposed that the N-terminal domain interacts with another uniform component of the coated vesicles. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 1W63_C 2JKR_A 2JKT_A 2XA7_A 2VGL_B 3TJZ_E.
Probab=99.26 E-value=1e-09 Score=120.64 Aligned_cols=381 Identities=20% Similarity=0.257 Sum_probs=263.3
Q ss_pred HHHHHHHHHHHhhc-ChhhHHHHHhCCChHHHHHhhcCCCCCccccCCCccchHHHhHHHHHHHHhcCChhhHHHHHhCC
Q 005044 79 AAKRATHVLAELAK-NEEVVNWIVEGGAVPALVKHLQAPPTSEADRNLKPFEHEVEKGSAFALGLLAVKPEHQQLIVDNG 157 (717)
Q Consensus 79 ~~~~a~~~L~~l~~-~~~~~~~~~~~g~i~~L~~lL~~~~~~~~~~~~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~ 157 (717)
.+.-+--.+..+.. +++.... ++..+.+=|.++++ .++..|+++|++++ +++....
T Consensus 58 ~Krl~yl~l~~~~~~~~~~~~l-----~~n~l~kdl~~~n~------------~~~~lAL~~l~~i~-~~~~~~~----- 114 (526)
T PF01602_consen 58 LKRLGYLYLSLYLHEDPELLIL-----IINSLQKDLNSPNP------------YIRGLALRTLSNIR-TPEMAEP----- 114 (526)
T ss_dssp HHHHHHHHHHHHTTTSHHHHHH-----HHHHHHHHHCSSSH------------HHHHHHHHHHHHH--SHHHHHH-----
T ss_pred HHHHHHHHHHHHhhcchhHHHH-----HHHHHHHhhcCCCH------------HHHHHHHhhhhhhc-ccchhhH-----
Confidence 45555555566555 4552222 36677777777665 99999999999998 4444322
Q ss_pred ChHHHHHHHhccccCCCccchhHHHHHHHHHHHHHhhcCchhhhHHHhcCCcHHHHHhhcCCCHHHHHHHHHHHHHhhcc
Q 005044 158 ALSHLVNLLKRHMDSNCSRAVNSVIRRAADAITNLAHENSSIKTRVRMEGGIPPLVELLEFTDTKVQRAAAGALRTLAFK 237 (717)
Q Consensus 158 ~i~~L~~lL~~~~~~~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~L~~~ 237 (717)
.++.+.+++.+.++ .++..|+.++..+...+++.- ... .++.+..++.++++.++..|+.++..+ ..
T Consensus 115 l~~~v~~ll~~~~~--------~VRk~A~~~l~~i~~~~p~~~---~~~-~~~~l~~lL~d~~~~V~~~a~~~l~~i-~~ 181 (526)
T PF01602_consen 115 LIPDVIKLLSDPSP--------YVRKKAALALLKIYRKDPDLV---EDE-LIPKLKQLLSDKDPSVVSAALSLLSEI-KC 181 (526)
T ss_dssp HHHHHHHHHHSSSH--------HHHHHHHHHHHHHHHHCHCCH---HGG-HHHHHHHHTTHSSHHHHHHHHHHHHHH-HC
T ss_pred HHHHHHHHhcCCch--------HHHHHHHHHHHHHhccCHHHH---HHH-HHHHHhhhccCCcchhHHHHHHHHHHH-cc
Confidence 36778888887766 899999999999998766532 122 578999999999999999999999999 21
Q ss_pred ChhhHHHHHhcCCHHHHHHHHcCCCHHHHHHHHHHHHHhhcCChHHHHHHHHcCChHHHHHhhccCChHHHHHHHHHHHH
Q 005044 238 NDENKNQIVECNALPTLILMLRSEDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLSSCCSESQREAALLLGQ 317 (717)
Q Consensus 238 ~~~~~~~~~~~g~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~l~~L~~ll~~~~~~~~~~a~~~L~~ 317 (717)
++.....+. ...++.|.+++...++-.+..+++++..++...+..... ...++.+..++.+.++.+..+++.++..
T Consensus 182 ~~~~~~~~~-~~~~~~L~~~l~~~~~~~q~~il~~l~~~~~~~~~~~~~---~~~i~~l~~~l~s~~~~V~~e~~~~i~~ 257 (526)
T PF01602_consen 182 NDDSYKSLI-PKLIRILCQLLSDPDPWLQIKILRLLRRYAPMEPEDADK---NRIIEPLLNLLQSSSPSVVYEAIRLIIK 257 (526)
T ss_dssp THHHHTTHH-HHHHHHHHHHHTCCSHHHHHHHHHHHTTSTSSSHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CcchhhhhH-HHHHHHhhhcccccchHHHHHHHHHHHhcccCChhhhhH---HHHHHHHHHHhhccccHHHHHHHHHHHH
Confidence 333211111 224566667778899999999999999998765554311 4567888888988889999999999998
Q ss_pred HhcCChhhHHHHHhcCChHHHHHHhcCCCHHHHHHHHHHHHHhhcCCCCchhhHhcCChHHHHHhh-cCCChhHHHHHHH
Q 005044 318 FAATDSDCKVHIVQRGAVRPLIEMLQSPDVQLREMSAFALGRLAQDMHNQAGIAHNGGLVPLLKLL-DSKNGSLQHNAAF 396 (717)
Q Consensus 318 l~~~~~~~~~~l~~~~~l~~L~~~l~~~~~~v~~~a~~~L~~l~~~~~~~~~l~~~~~l~~L~~ll-~~~~~~v~~~a~~ 396 (717)
+... +. .-..+++.|..++.++++.++..++..|..++... ...+. .....+..+ .+++..++..++.
T Consensus 258 l~~~-~~-----~~~~~~~~L~~lL~s~~~nvr~~~L~~L~~l~~~~---~~~v~--~~~~~~~~l~~~~d~~Ir~~~l~ 326 (526)
T PF01602_consen 258 LSPS-PE-----LLQKAINPLIKLLSSSDPNVRYIALDSLSQLAQSN---PPAVF--NQSLILFFLLYDDDPSIRKKALD 326 (526)
T ss_dssp HSSS-HH-----HHHHHHHHHHHHHTSSSHHHHHHHHHHHHHHCCHC---HHHHG--THHHHHHHHHCSSSHHHHHHHHH
T ss_pred hhcc-hH-----HHHhhHHHHHHHhhcccchhehhHHHHHHHhhccc---chhhh--hhhhhhheecCCCChhHHHHHHH
Confidence 8532 22 23446789999999999999999999999998754 22222 222233344 4889999999999
Q ss_pred HHHhccCCCcchHHHHHhcCccccccch-hH-HhhhHHHHHHHHHHHHHHh---hhchHHHHHHHHhhcchhHHHHHHHH
Q 005044 397 ALYGLADNEDNVADFIRVGGVQKLQDGE-FI-VQATKDCVAKTLKRLEEKI---HGRVLNHLLYLMRVAEKGVQRRVALA 471 (717)
Q Consensus 397 ~L~~l~~~~~~~~~l~~~~~i~~L~~~~-~~-~~~~~~~~~~~~~~l~~~~---~~~~~~~L~~ll~~~~~~v~~~a~~a 471 (717)
+|..++.. .+...++. .|.... .. .......+...+..+.... ....+..+++++...+..+...+...
T Consensus 327 lL~~l~~~-~n~~~Il~-----eL~~~l~~~~d~~~~~~~i~~I~~la~~~~~~~~~~v~~l~~ll~~~~~~~~~~~~~~ 400 (526)
T PF01602_consen 327 LLYKLANE-SNVKEILD-----ELLKYLSELSDPDFRRELIKAIGDLAEKFPPDAEWYVDTLLKLLEISGDYVSNEIINV 400 (526)
T ss_dssp HHHHH--H-HHHHHHHH-----HHHHHHHHC--HHHHHHHHHHHHHHHHHHGSSHHHHHHHHHHHHHCTGGGCHCHHHHH
T ss_pred HHhhcccc-cchhhHHH-----HHHHHHHhccchhhhhhHHHHHHHHHhccCchHHHHHHHHHHhhhhccccccchHHHH
Confidence 99999853 34333332 122211 11 1123334444444444443 23478899999998888888888888
Q ss_pred HHhccCCCCCceeeecCCCHHHHHHHhcC-CCchhhhhhHHHHHHhhhcc
Q 005044 472 LAHLCSPDDQRTIFIDGGGLELLLGLLGS-TNPKQQLDGAVALFKLANKA 520 (717)
Q Consensus 472 L~~l~~~~~~~~~~~~~~~l~~L~~ll~~-~~~~v~~~a~~~l~~L~~~~ 520 (717)
+.++....+.. ....+..|+.++.+ ++++++..++|.+...+...
T Consensus 401 i~~ll~~~~~~----~~~~l~~L~~~l~~~~~~~~~~~~~wilGEy~~~~ 446 (526)
T PF01602_consen 401 IRDLLSNNPEL----REKILKKLIELLEDISSPEALAAAIWILGEYGELI 446 (526)
T ss_dssp HHHHHHHSTTT----HHHHHHHHHHHHTSSSSHHHHHHHHHHHHHHCHHH
T ss_pred HHHHhhcChhh----hHHHHHHHHHHHHHhhHHHHHHHHHhhhcccCCcc
Confidence 88886543322 12358888888876 77888999999998887753
No 49
>KOG1241 consensus Karyopherin (importin) beta 1 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.26 E-value=2.1e-08 Score=104.29 Aligned_cols=342 Identities=15% Similarity=0.121 Sum_probs=223.0
Q ss_pred HHHhHHHHHHHHhc--CChhhHHHHHhCCChHHHHHHHhccccCCCccchhHHHHHHHHHHHHHhhcCchhhhHHHh-cC
Q 005044 131 EVEKGSAFALGLLA--VKPEHQQLIVDNGALSHLVNLLKRHMDSNCSRAVNSVIRRAADAITNLAHENSSIKTRVRM-EG 207 (717)
Q Consensus 131 ~v~~~a~~~L~~l~--~~~~~~~~~~~~~~i~~L~~lL~~~~~~~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~-~~ 207 (717)
...-.|..+++.++ .-|.+ ..|-|+..|.+.-.+..+. .+++.++.+|+.+|.+-..- ..... ..
T Consensus 105 ~~~s~Aaq~va~IA~~ElP~n--------~wp~li~~lv~nv~~~~~~---~~k~~slealGyice~i~pe-vl~~~sN~ 172 (859)
T KOG1241|consen 105 RRPSSAAQCVAAIACIELPQN--------QWPELIVTLVSNVGEEQAS---MVKESSLEALGYICEDIDPE-VLEQQSND 172 (859)
T ss_pred CccchHHHHHHHHHHhhCchh--------hCHHHHHHHHHhcccccch---HHHHHHHHHHHHHHccCCHH-HHHHHHhH
Confidence 55667888888887 44433 3555555554433222111 58899999999999854332 22222 24
Q ss_pred CcHHHHHhhcC--CCHHHHHHHHHHHHHhhccChhh-HHHHHhcCCHHHHHHHHcCCCHHHHHHHHHHHHHhhcCChHHH
Q 005044 208 GIPPLVELLEF--TDTKVQRAAAGALRTLAFKNDEN-KNQIVECNALPTLILMLRSEDSAIHYEAVGVIGNLVHSSPNIK 284 (717)
Q Consensus 208 ~i~~L~~ll~~--~~~~v~~~a~~~L~~L~~~~~~~-~~~~~~~g~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~ 284 (717)
++..++.-.+. ++..+|..|+.+|.+-......+ ....-..-+++..++.-.+++.+++..|..+|..+..-.-...
T Consensus 173 iLtaIv~gmrk~e~s~~vRLaa~~aL~nsLef~~~nF~~E~ern~iMqvvcEatq~~d~~i~~aa~~ClvkIm~LyY~~m 252 (859)
T KOG1241|consen 173 ILTAIVQGMRKEETSAAVRLAALNALYNSLEFTKANFNNEMERNYIMQVVCEATQSPDEEIQVAAFQCLVKIMSLYYEFM 252 (859)
T ss_pred HHHHHHhhccccCCchhHHHHHHHHHHHHHHHHHHhhccHhhhceeeeeeeecccCCcHHHHHHHHHHHHHHHHHHHHHH
Confidence 45666665544 67899999999999876422111 1111223355667777788999999999999999976555554
Q ss_pred HHHHHcCChHHHHHhhccCChHHHHHHHHHHHHHhcCChhhHHH---------------H---HhcCChHHHHHHhcC--
Q 005044 285 KEVLAAGALQPVIGLLSSCCSESQREAALLLGQFAATDSDCKVH---------------I---VQRGAVRPLIEMLQS-- 344 (717)
Q Consensus 285 ~~~~~~g~l~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~---------------l---~~~~~l~~L~~~l~~-- 344 (717)
..-....++..-+..+.++++++...+....+++|...-+.... + .-.+++|.|+++|..
T Consensus 253 ~~yM~~alfaitl~amks~~deValQaiEFWsticeEEiD~~~e~~e~~d~~~~p~~~~fa~~a~~~v~P~Ll~~L~kqd 332 (859)
T KOG1241|consen 253 EPYMEQALFAITLAAMKSDNDEVALQAIEFWSTICEEEIDLAIEYGEAVDQGLPPSSKYFARQALQDVVPVLLELLTKQD 332 (859)
T ss_pred HHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCchhhHHHHHHHhHhhHHHHHHHHhCC
Confidence 55556667888888899999999999999999887432221111 1 113678899999854
Q ss_pred -----CCHHHHHHHHHHHHHhhcCCCCchhhHhcCChHHHHHhhcCCChhHHHHHHHHHHhccCCCcchHHHHHhcCccc
Q 005044 345 -----PDVQLREMSAFALGRLAQDMHNQAGIAHNGGLVPLLKLLDSKNGSLQHNAAFALYGLADNEDNVADFIRVGGVQK 419 (717)
Q Consensus 345 -----~~~~v~~~a~~~L~~l~~~~~~~~~l~~~~~l~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~l~~~~~i~~ 419 (717)
++.....+|..+|.-+++...+ .++. ..++.+-+-+.++++.-+..+..+++.+-.+++....
T Consensus 333 e~~d~DdWnp~kAAg~CL~l~A~~~~D--~Iv~-~Vl~Fiee~i~~pdwr~reaavmAFGSIl~gp~~~~L--------- 400 (859)
T KOG1241|consen 333 EDDDDDDWNPAKAAGVCLMLFAQCVGD--DIVP-HVLPFIEENIQNPDWRNREAAVMAFGSILEGPEPDKL--------- 400 (859)
T ss_pred CCcccccCcHHHHHHHHHHHHHHHhcc--cchh-hhHHHHHHhcCCcchhhhhHHHHHHHhhhcCCchhhh---------
Confidence 2334566666677666653221 1222 3444455577889999999999999999876544211
Q ss_pred cccchhHHhhhHHHHHHHHHHHHHHhhhchHHHHHHHHhhcchhHHHHHHHHHHhccCCCCC--ceeeecCCCHHHHHHH
Q 005044 420 LQDGEFIVQATKDCVAKTLKRLEEKIHGRVLNHLLYLMRVAEKGVQRRVALALAHLCSPDDQ--RTIFIDGGGLELLLGL 497 (717)
Q Consensus 420 L~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~--~~~~~~~~~l~~L~~l 497 (717)
...-.+.+|.+++++.++.--++..++|+|+.++..-.. .........++.+..=
T Consensus 401 -----------------------t~iV~qalp~ii~lm~D~sl~VkdTaAwtlgrI~d~l~e~~~n~~~l~~~l~~l~~g 457 (859)
T KOG1241|consen 401 -----------------------TPIVIQALPSIINLMSDPSLWVKDTAAWTLGRIADFLPEAIINQELLQSKLSALLEG 457 (859)
T ss_pred -----------------------hHHHhhhhHHHHHHhcCchhhhcchHHHHHHHHHhhchhhcccHhhhhHHHHHHHHH
Confidence 011223688899999999889999999999999765331 1111112233333333
Q ss_pred hcCCCchhhhhhHHHHHHhhhcc
Q 005044 498 LGSTNPKQQLDGAVALFKLANKA 520 (717)
Q Consensus 498 l~~~~~~v~~~a~~~l~~L~~~~ 520 (717)
+. +.|.+...++|++.+|+...
T Consensus 458 L~-DePrva~N~CWAf~~Laea~ 479 (859)
T KOG1241|consen 458 LN-DEPRVASNVCWAFISLAEAA 479 (859)
T ss_pred hh-hCchHHHHHHHHHHHHHHHH
Confidence 33 67889999999999999764
No 50
>KOG2023 consensus Nuclear transport receptor Karyopherin-beta2/Transportin (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.25 E-value=1.2e-10 Score=118.54 Aligned_cols=386 Identities=16% Similarity=0.115 Sum_probs=252.1
Q ss_pred CChHHHHHhhcCCCCCccccCCCccchHHHhHHHHHHHHhcCChhhHHHHHhCCChHHHHHHHhccccCCCccchhHHHH
Q 005044 104 GAVPALVKHLQAPPTSEADRNLKPFEHEVEKGSAFALGLLAVKPEHQQLIVDNGALSHLVNLLKRHMDSNCSRAVNSVIR 183 (717)
Q Consensus 104 g~i~~L~~lL~~~~~~~~~~~~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~i~~L~~lL~~~~~~~~~~~~~~~~~ 183 (717)
.++..+.++|++..+. +++++..+.+.+-++-..|+.- ..|+-.|.+..... ..++.
T Consensus 10 ~~l~ql~~lLk~s~Sp---------n~~~~~~~~~~leq~~~~pdfn---------nYL~~IL~~~~~~d-----~~~Rs 66 (885)
T KOG2023|consen 10 QGLQQLAQLLKNSQSP---------NSETRNNVQEKLEQFNLFPDFN---------NYLIYILIRAKSED-----VPTRS 66 (885)
T ss_pred HHHHHHHHHHHhccCC---------ChHHHHHHHHHHHHHhcccchh---------ceeeEEEecccccc-----hhHHH
Confidence 3466677777764442 2388888888888777665542 33333343322211 14455
Q ss_pred HHHHHHHHHhhcCc-hhhhHHHhcCCc-HHHHHhhcCCCHHHHHHHHHHHHHhhccChhhHHHHHhcCCHHHHHHHHcCC
Q 005044 184 RAADAITNLAHENS-SIKTRVRMEGGI-PPLVELLEFTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSE 261 (717)
Q Consensus 184 ~a~~~L~~l~~~~~-~~~~~~~~~~~i-~~L~~ll~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~g~i~~L~~ll~~~ 261 (717)
.|--.|.|=...+. ..... ..+.+ ..++.-+.+.++-+|..+-.++..+++. ..... -..++|.|+.+|.++
T Consensus 67 ~aGLlLKNnvr~~~~~~~~~--~~~yiKs~~l~~lgd~~~lIr~tvGivITTI~s~--~~~~~--wpelLp~L~~~L~s~ 140 (885)
T KOG2023|consen 67 LAGLLLKNNVRGHYNSIPSE--VLDYIKSECLHGLGDASPLIRATVGIVITTIAST--GGLQH--WPELLPQLCELLDSP 140 (885)
T ss_pred HhhhhHhccccccccCCChH--HHHHHHHHHHhhccCchHHHHhhhhheeeeeecc--ccccc--chhHHHHHHHHhcCC
Confidence 55555555333221 11110 01112 2344445556665555444444445431 11110 134689999999999
Q ss_pred CHHHHHHHHHHHHHhhcCChHHHHH-HHH---cCChHHHHHhhccCChHHHHHHHHHHHHHhcCChhhHHHHHhcCChHH
Q 005044 262 DSAIHYEAVGVIGNLVHSSPNIKKE-VLA---AGALQPVIGLLSSCCSESQREAALLLGQFAATDSDCKVHIVQRGAVRP 337 (717)
Q Consensus 262 ~~~v~~~a~~~L~~l~~~~~~~~~~-~~~---~g~l~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~l~~~~~l~~ 337 (717)
+....+-|..+|..++..+...-+. +.. .-.+|.++++.+++++.+|..|..++-.+.-..+.... ..-..+++.
T Consensus 141 d~n~~EgA~~AL~KIcEDsa~~lds~~~~rpl~~mipkfl~f~~h~spkiRs~A~~cvNq~i~~~~qal~-~~iD~Fle~ 219 (885)
T KOG2023|consen 141 DYNTCEGAFGALQKICEDSAQFLDSDVLTRPLNIMIPKFLQFFKHPSPKIRSHAVGCVNQFIIIQTQALY-VHIDKFLEI 219 (885)
T ss_pred cccccchhHHHHHHHHhhhHHHHhhhcccCchHHhHHHHHHHHhCCChhHHHHHHhhhhheeecCcHHHH-HHHHHHHHH
Confidence 9999999999999999776543222 111 12689999999999999999999988877533222211 222456788
Q ss_pred HHHHhcCCCHHHHHHHHHHHHHhhcCCCCchhhHhcCChHHHHHhhcCCChhHHHHHHHHHHhccCCCcchHHHHHh--c
Q 005044 338 LIEMLQSPDVQLREMSAFALGRLAQDMHNQAGIAHNGGLVPLLKLLDSKNGSLQHNAAFALYGLADNEDNVADFIRV--G 415 (717)
Q Consensus 338 L~~~l~~~~~~v~~~a~~~L~~l~~~~~~~~~l~~~~~l~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~l~~~--~ 415 (717)
+..+..+.++.||...|.++..|..-...+-.-.-.++++.+++...+.+..|...||.....++..+-.+..+... .
T Consensus 220 lFalanD~~~eVRk~vC~alv~Llevr~dkl~phl~~IveyML~~tqd~dE~VALEACEFwla~aeqpi~~~~L~p~l~k 299 (885)
T KOG2023|consen 220 LFALANDEDPEVRKNVCRALVFLLEVRPDKLVPHLDNIVEYMLQRTQDVDENVALEACEFWLALAEQPICKEVLQPYLDK 299 (885)
T ss_pred HHHHccCCCHHHHHHHHHHHHHHHHhcHHhcccchHHHHHHHHHHccCcchhHHHHHHHHHHHHhcCcCcHHHHHHHHHH
Confidence 88888889999999999999999875554444444566777777788889999999999999999877554444332 2
Q ss_pred Cccccccchh---------H---------------------------------------------H---hhhHHHHHHHH
Q 005044 416 GVQKLQDGEF---------I---------------------------------------------V---QATKDCVAKTL 438 (717)
Q Consensus 416 ~i~~L~~~~~---------~---------------------------------------------~---~~~~~~~~~~~ 438 (717)
.++.|++.+. . . =-.+.|-+.++
T Consensus 300 liPvLl~~M~Ysd~D~~LL~~~eeD~~vpDreeDIkPRfhksk~~~~~~~~~~eDdddDe~DDdD~~~dWNLRkCSAAaL 379 (885)
T KOG2023|consen 300 LIPVLLSGMVYSDDDIILLKNNEEDESVPDREEDIKPRFHKSKEHGNGEDADDEDDDDDEDDDDDAFSDWNLRKCSAAAL 379 (885)
T ss_pred HHHHHHccCccccccHHHhcCccccccCCchhhhccchhhhchhccCccccccccccccccccccccccccHhhccHHHH
Confidence 3333332100 0 0 01355777888
Q ss_pred HHHHHHhhhchHHHHHHHHhh----cchhHHHHHHHHHHhccCCCCCceeeecCCCHHHHHHHhcCCCchhhhhhHHHHH
Q 005044 439 KRLEEKIHGRVLNHLLYLMRV----AEKGVQRRVALALAHLCSPDDQRTIFIDGGGLELLLGLLGSTNPKQQLDGAVALF 514 (717)
Q Consensus 439 ~~l~~~~~~~~~~~L~~ll~~----~~~~v~~~a~~aL~~l~~~~~~~~~~~~~~~l~~L~~ll~~~~~~v~~~a~~~l~ 514 (717)
..+..++..++++.++.+++. ++..+|+.++.+|+.++.+-.....-.-...+|.|++++.++.+-||.-.+|.|.
T Consensus 380 DVLanvf~~elL~~l~PlLk~~L~~~~W~vrEagvLAlGAIAEGcM~g~~p~LpeLip~l~~~L~DKkplVRsITCWTLs 459 (885)
T KOG2023|consen 380 DVLANVFGDELLPILLPLLKEHLSSEEWKVREAGVLALGAIAEGCMQGFVPHLPELIPFLLSLLDDKKPLVRSITCWTLS 459 (885)
T ss_pred HHHHHhhHHHHHHHHHHHHHHHcCcchhhhhhhhHHHHHHHHHHHhhhcccchHHHHHHHHHHhccCccceeeeeeeeHh
Confidence 888888888888888888765 4678999999999999877442222112246789999999999999999999999
Q ss_pred Hhhhc
Q 005044 515 KLANK 519 (717)
Q Consensus 515 ~L~~~ 519 (717)
+.++.
T Consensus 460 Rys~w 464 (885)
T KOG2023|consen 460 RYSKW 464 (885)
T ss_pred hhhhh
Confidence 88875
No 51
>KOG0168 consensus Putative ubiquitin fusion degradation protein [Posttranslational modification, protein turnover, chaperones]
Probab=99.20 E-value=5.6e-09 Score=109.49 Aligned_cols=246 Identities=18% Similarity=0.217 Sum_probs=193.6
Q ss_pred HHHHHHHHHHHHHHhhc--ChhhHHHHHhCCChHHHHHhhcCCCCCccccCCCccchHHHhHHHHHHHHhc-CChhhHHH
Q 005044 76 DRAAAKRATHVLAELAK--NEEVVNWIVEGGAVPALVKHLQAPPTSEADRNLKPFEHEVEKGSAFALGLLA-VKPEHQQL 152 (717)
Q Consensus 76 ~~~~~~~a~~~L~~l~~--~~~~~~~~~~~g~i~~L~~lL~~~~~~~~~~~~~~~~~~v~~~a~~~L~~l~-~~~~~~~~ 152 (717)
|+..+.+|+.-|+.+.. +++....+--.-.+|.|+.+|++... +++...|+++|.+++ --|+....
T Consensus 181 Des~Qleal~Elce~L~mgnEesLs~fpv~slvp~Lv~LL~~E~n-----------~DIMl~AcRaltyl~evlP~S~a~ 249 (1051)
T KOG0168|consen 181 DESQQLEALTELCEMLSMGNEESLSGFPVKSLVPVLVALLSHEHN-----------FDIMLLACRALTYLCEVLPRSSAI 249 (1051)
T ss_pred ChHHHHHHHHHHHHHHhhcchhhhccccHHHHHHHHHHHHhcccc-----------HHHHHHHHHHHHHHHhhccchhhe
Confidence 44457888888887554 45554444445679999999998765 399999999999999 77888888
Q ss_pred HHhCCChHHHHHHHhccccCCCccchhHHHHHHHHHHHHHhhcCchhhhHHHhcCCcHHHHHhhcCCCHHHHHHHHHHHH
Q 005044 153 IVDNGALSHLVNLLKRHMDSNCSRAVNSVIRRAADAITNLAHENSSIKTRVRMEGGIPPLVELLEFTDTKVQRAAAGALR 232 (717)
Q Consensus 153 ~~~~~~i~~L~~lL~~~~~~~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~ 232 (717)
+++.++||.|+.-|..-.-- ++.+.++.+|-.++..++. .+.+.|++...+.++.--+..+++.|+.+..
T Consensus 250 vV~~~aIPvl~~kL~~Ieyi-------DvAEQ~LqALE~iSR~H~~---AiL~AG~l~a~LsylDFFSi~aQR~Alaiaa 319 (1051)
T KOG0168|consen 250 VVDEHAIPVLLEKLLTIEYI-------DVAEQSLQALEKISRRHPK---AILQAGALSAVLSYLDFFSIHAQRVALAIAA 319 (1051)
T ss_pred eecccchHHHHHhhhhhhhh-------HHHHHHHHHHHHHHhhccH---HHHhcccHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999866553321 7889999999999886663 6788999999999998778899999999999
Q ss_pred HhhccC-hhhHHHHHhcCCHHHHHHHHcCCCHHHHHHHHHHHHHhhc---CChHHHHHHHHcCChHHHHHhhccCC----
Q 005044 233 TLAFKN-DENKNQIVECNALPTLILMLRSEDSAIHYEAVGVIGNLVH---SSPNIKKEVLAAGALQPVIGLLSSCC---- 304 (717)
Q Consensus 233 ~L~~~~-~~~~~~~~~~g~i~~L~~ll~~~~~~v~~~a~~~L~~l~~---~~~~~~~~~~~~g~l~~L~~ll~~~~---- 304 (717)
|+|..- ++.-..+++ .+|.|..+|...+....+.++.++..++. ..++.-+.+...|++.-..+++.-..
T Consensus 320 N~Cksi~sd~f~~v~e--alPlL~~lLs~~D~k~ies~~ic~~ri~d~f~h~~~kLdql~s~dLi~~~~qLlsvt~t~Ls 397 (1051)
T KOG0168|consen 320 NCCKSIRSDEFHFVME--ALPLLTPLLSYQDKKPIESVCICLTRIADGFQHGPDKLDQLCSHDLITNIQQLLSVTPTILS 397 (1051)
T ss_pred HHHhcCCCccchHHHH--HHHHHHHHHhhccchhHHHHHHHHHHHHHhcccChHHHHHHhchhHHHHHHHHHhcCccccc
Confidence 999742 233334444 59999999999998888888888888864 34556678888999999999987542
Q ss_pred hHHHHHHHHHHHHHhcCChhhHHHHHhcCChHHHHHHhcC
Q 005044 305 SESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQS 344 (717)
Q Consensus 305 ~~~~~~a~~~L~~l~~~~~~~~~~l~~~~~l~~L~~~l~~ 344 (717)
..+.......+..++++.+.....+...++...|..+|..
T Consensus 398 ~~~~~~vIrmls~msS~~pl~~~tl~k~~I~~~L~~il~g 437 (1051)
T KOG0168|consen 398 NGTYTGVIRMLSLMSSGSPLLFRTLLKLDIADTLKRILQG 437 (1051)
T ss_pred ccchhHHHHHHHHHccCChHHHHHHHHhhHHHHHHHHHhc
Confidence 2345566778888888888888888888998888888853
No 52
>PF01602 Adaptin_N: Adaptin N terminal region; InterPro: IPR002553 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. Clathrin coats contain both clathrin and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors []. All AP complexes are heterotetramers composed of two large subunits (adaptins), a medium subunit (mu) and a small subunit (sigma). Each subunit has a specific function. Adaptin subunits recognise and bind to clathrin through their hinge region (clathrin box), and recruit accessory proteins that modulate AP function through their C-terminal appendage domains. By contrast, GGAs are monomers composed of four domains, which have functions similar to AP subunits: an N-terminal VHS (Vps27p/Hrs/Stam) domain, a GAT (GGA and Tom1) domain, a hinge region, and a C-terminal GAE (gamma-adaptin ear) domain. The GAE domain is similar to the AP gamma-adaptin ear domain, being responsible for the recruitment of accessory proteins that regulate clathrin-mediated endocytosis []. While clathrin mediates endocytic protein transport from ER to Golgi, coatomers (COPI, COPII) primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the N-terminal domain of various adaptins from different AP clathrin adaptor complexes (including AP1, AP2, AP3 and AP4), and from the beta and gamma subunits of various coatomer (COP) adaptors. This domain has a 2-layer alpha/alpha fold that forms a right-handed superhelix, and is a member of the ARM repeat superfamily []. The N-terminal region of the various AP adaptor proteins share strong sequence identity; by contrast, the C-terminal domains of different adaptins share similar structural folds, but have little sequence identity []. It has been proposed that the N-terminal domain interacts with another uniform component of the coated vesicles. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 1W63_C 2JKR_A 2JKT_A 2XA7_A 2VGL_B 3TJZ_E.
Probab=99.18 E-value=3e-09 Score=116.94 Aligned_cols=380 Identities=18% Similarity=0.165 Sum_probs=257.5
Q ss_pred HHHHHHHHHHhhc-ChhhHHHHHhCCChHHHHHhhcCCCCCccccCCCccchHHHhHHHHHHHHhc-CChhhHHHHHhCC
Q 005044 80 AKRATHVLAELAK-NEEVVNWIVEGGAVPALVKHLQAPPTSEADRNLKPFEHEVEKGSAFALGLLA-VKPEHQQLIVDNG 157 (717)
Q Consensus 80 ~~~a~~~L~~l~~-~~~~~~~~~~~g~i~~L~~lL~~~~~~~~~~~~~~~~~~v~~~a~~~L~~l~-~~~~~~~~~~~~~ 157 (717)
+.+++..|..+.. +.+.. .+.+.+++++.+.+. ..++.+--++..+. .+++... .
T Consensus 23 ~~~~l~kli~~~~~G~~~~------~~~~~vi~l~~s~~~------------~~Krl~yl~l~~~~~~~~~~~~--l--- 79 (526)
T PF01602_consen 23 KKEALKKLIYLMMLGYDIS------FLFMEVIKLISSKDL------------ELKRLGYLYLSLYLHEDPELLI--L--- 79 (526)
T ss_dssp HHHHHHHHHHHHHTT---G------STHHHHHCTCSSSSH------------HHHHHHHHHHHHHTTTSHHHHH--H---
T ss_pred HHHHHHHHHHHHHcCCCCc------hHHHHHHHHhCCCCH------------HHHHHHHHHHHHHhhcchhHHH--H---
Confidence 5666666655443 43221 467888888886655 88888888888888 5555221 1
Q ss_pred ChHHHHHHHhccccCCCccchhHHHHHHHHHHHHHhhcCchhhhHHHhcCCcHHHHHhhcCCCHHHHHHHHHHHHHhhcc
Q 005044 158 ALSHLVNLLKRHMDSNCSRAVNSVIRRAADAITNLAHENSSIKTRVRMEGGIPPLVELLEFTDTKVQRAAAGALRTLAFK 237 (717)
Q Consensus 158 ~i~~L~~lL~~~~~~~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~L~~~ 237 (717)
++..+.+=|.+.++ .++..|++++++++. ++... ..++.+.+++.++++.||..|+.++..+...
T Consensus 80 ~~n~l~kdl~~~n~--------~~~~lAL~~l~~i~~--~~~~~-----~l~~~v~~ll~~~~~~VRk~A~~~l~~i~~~ 144 (526)
T PF01602_consen 80 IINSLQKDLNSPNP--------YIRGLALRTLSNIRT--PEMAE-----PLIPDVIKLLSDPSPYVRKKAALALLKIYRK 144 (526)
T ss_dssp HHHHHHHHHCSSSH--------HHHHHHHHHHHHH-S--HHHHH-----HHHHHHHHHHHSSSHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhhcCCCH--------HHHHHHHhhhhhhcc--cchhh-----HHHHHHHHHhcCCchHHHHHHHHHHHHHhcc
Confidence 24555555555544 789999999999883 33332 2467889999999999999999999999876
Q ss_pred ChhhHHHHHhcCCHHHHHHHHcCCCHHHHHHHHHHHHHhhcCChHHHHHHHHcCChHHHHHhhccCChHHHHHHHHHHHH
Q 005044 238 NDENKNQIVECNALPTLILMLRSEDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLSSCCSESQREAALLLGQ 317 (717)
Q Consensus 238 ~~~~~~~~~~~g~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~l~~L~~ll~~~~~~~~~~a~~~L~~ 317 (717)
+++... .. .++.+.+++.+.++.|+..|+.++..+ ..++.... -.-...+..|.+++...++-.+..++..+..
T Consensus 145 ~p~~~~---~~-~~~~l~~lL~d~~~~V~~~a~~~l~~i-~~~~~~~~-~~~~~~~~~L~~~l~~~~~~~q~~il~~l~~ 218 (526)
T PF01602_consen 145 DPDLVE---DE-LIPKLKQLLSDKDPSVVSAALSLLSEI-KCNDDSYK-SLIPKLIRILCQLLSDPDPWLQIKILRLLRR 218 (526)
T ss_dssp CHCCHH---GG-HHHHHHHHTTHSSHHHHHHHHHHHHHH-HCTHHHHT-THHHHHHHHHHHHHTCCSHHHHHHHHHHHTT
T ss_pred CHHHHH---HH-HHHHHhhhccCCcchhHHHHHHHHHHH-ccCcchhh-hhHHHHHHHhhhcccccchHHHHHHHHHHHh
Confidence 555422 22 578899999999999999999999999 33332211 1223345566666677888888889999998
Q ss_pred HhcCChhhHHHHHhcCChHHHHHHhcCCCHHHHHHHHHHHHHhhcCCCCchhhHhcCChHHHHHhhcCCChhHHHHHHHH
Q 005044 318 FAATDSDCKVHIVQRGAVRPLIEMLQSPDVQLREMSAFALGRLAQDMHNQAGIAHNGGLVPLLKLLDSKNGSLQHNAAFA 397 (717)
Q Consensus 318 l~~~~~~~~~~l~~~~~l~~L~~~l~~~~~~v~~~a~~~L~~l~~~~~~~~~l~~~~~l~~L~~ll~~~~~~v~~~a~~~ 397 (717)
++...+..... ..+++.+..++++.++.+..+++.++..+..... ....+++.|.+++.++++.++..++..
T Consensus 219 ~~~~~~~~~~~---~~~i~~l~~~l~s~~~~V~~e~~~~i~~l~~~~~-----~~~~~~~~L~~lL~s~~~nvr~~~L~~ 290 (526)
T PF01602_consen 219 YAPMEPEDADK---NRIIEPLLNLLQSSSPSVVYEAIRLIIKLSPSPE-----LLQKAINPLIKLLSSSDPNVRYIALDS 290 (526)
T ss_dssp STSSSHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSSHH-----HHHHHHHHHHHHHTSSSHHHHHHHHHH
T ss_pred cccCChhhhhH---HHHHHHHHHHhhccccHHHHHHHHHHHHhhcchH-----HHHhhHHHHHHHhhcccchhehhHHHH
Confidence 87555444311 4567888888988889999999999998766433 445678889999999999999999999
Q ss_pred HHhccCCCcchHHHHHhcC-ccccccchhHHhhhHHHHHHHHHHHH-HHhhhchHHHHHHHHhh-cchhHHHHHHHHHHh
Q 005044 398 LYGLADNEDNVADFIRVGG-VQKLQDGEFIVQATKDCVAKTLKRLE-EKIHGRVLNHLLYLMRV-AEKGVQRRVALALAH 474 (717)
Q Consensus 398 L~~l~~~~~~~~~l~~~~~-i~~L~~~~~~~~~~~~~~~~~~~~l~-~~~~~~~~~~L~~ll~~-~~~~v~~~a~~aL~~ 474 (717)
|..++... ...+..... +..+. .......+......+..+. ...-..+++.|.+.+.. .+++++..++..|+.
T Consensus 291 L~~l~~~~--~~~v~~~~~~~~~l~--~~~d~~Ir~~~l~lL~~l~~~~n~~~Il~eL~~~l~~~~d~~~~~~~i~~I~~ 366 (526)
T PF01602_consen 291 LSQLAQSN--PPAVFNQSLILFFLL--YDDDPSIRKKALDLLYKLANESNVKEILDELLKYLSELSDPDFRRELIKAIGD 366 (526)
T ss_dssp HHHHCCHC--HHHHGTHHHHHHHHH--CSSSHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHC--HHHHHHHHHHHHH
T ss_pred HHHhhccc--chhhhhhhhhhheec--CCCChhHHHHHHHHHhhcccccchhhHHHHHHHHHHhccchhhhhhHHHHHHH
Confidence 99998654 111111000 00000 0011122222233332222 22234588889999844 488899999999999
Q ss_pred ccCCCCCceeeecCCCHHHHHHHhcCCCchhhhhhHHHHHHhhhc
Q 005044 475 LCSPDDQRTIFIDGGGLELLLGLLGSTNPKQQLDGAVALFKLANK 519 (717)
Q Consensus 475 l~~~~~~~~~~~~~~~l~~L~~ll~~~~~~v~~~a~~~l~~L~~~ 519 (717)
++...... ....+..+++++..++..+...+...+.++...
T Consensus 367 la~~~~~~----~~~~v~~l~~ll~~~~~~~~~~~~~~i~~ll~~ 407 (526)
T PF01602_consen 367 LAEKFPPD----AEWYVDTLLKLLEISGDYVSNEIINVIRDLLSN 407 (526)
T ss_dssp HHHHHGSS----HHHHHHHHHHHHHCTGGGCHCHHHHHHHHHHHH
T ss_pred HHhccCch----HHHHHHHHHHhhhhccccccchHHHHHHHHhhc
Confidence 97543211 123578999999988888899999999998875
No 53
>KOG1293 consensus Proteins containing armadillo/beta-catenin-like repeat [General function prediction only]
Probab=99.17 E-value=3.4e-09 Score=108.57 Aligned_cols=298 Identities=14% Similarity=0.123 Sum_probs=195.5
Q ss_pred HHhhcChhhHHHHHhCCChHHHHHhhcCCCCCccccCCCccchHHHhHHHHHHH---Hhc-CChhhH----HHHHhCCCh
Q 005044 88 AELAKNEEVVNWIVEGGAVPALVKHLQAPPTSEADRNLKPFEHEVEKGSAFALG---LLA-VKPEHQ----QLIVDNGAL 159 (717)
Q Consensus 88 ~~l~~~~~~~~~~~~~g~i~~L~~lL~~~~~~~~~~~~~~~~~~v~~~a~~~L~---~l~-~~~~~~----~~~~~~~~i 159 (717)
.+++..++++..+...|+.+.+.-++...+. .+|.+|+.++. ++. .++... ....+.|+.
T Consensus 165 a~~s~~~~hq~Il~Na~i~ekI~~l~~~~s~------------~~RlaaL~~~sr~~~iL~Nn~~~sm~~l~~L~d~~v~ 232 (678)
T KOG1293|consen 165 AHLSSTKDHQLILCNAGILEKINILLMYLSS------------KLRLAALLCLSRGDRILRNNPLGSMFLLGLLKDKGVN 232 (678)
T ss_pred ccccccchhhheeccccchhhHHHHHHhhhH------------HHHHHHHHHhhccceeeecCchhHHHHHHHHhccccc
Confidence 3344457777777788888887777776666 89999999999 777 555432 333455555
Q ss_pred H--HHHHHHhccccCCCccchhHHHHHHHHHHHHHhhcCchhh-----hHHHhcC----------------Cc-------
Q 005044 160 S--HLVNLLKRHMDSNCSRAVNSVIRRAADAITNLAHENSSIK-----TRVRMEG----------------GI------- 209 (717)
Q Consensus 160 ~--~L~~lL~~~~~~~~~~~~~~~~~~a~~~L~~l~~~~~~~~-----~~~~~~~----------------~i------- 209 (717)
+ .+..++++.+. ..+..++.++.+++..+-... ..+.+.| ++
T Consensus 233 ~r~~v~rL~k~~~~--------s~~l~sl~cl~~~~~~s~~~d~l~~~~~~~dmgd~~i~q~~~i~l~~~P~~s~l~~~~ 304 (678)
T KOG1293|consen 233 IRCVVTRLLKDPDF--------SERLRSLECLVPYLRKSFNYDPLPWWFIFFDMGDSLIVQYNCIVLMNDPGLSTLDHTN 304 (678)
T ss_pred hhhhhhhhhhCCCc--------cHHHHHHHHHHHHHhccccccccccceeeccCchHHHHHHhhheeecCCceeehhhhh
Confidence 5 45566666655 556777777777776441000 0011111 00
Q ss_pred --HHHH-HhhcC-CCHH-------HHHHHHHHHHHhhccChhhHHHHHhcCCHH----------------------HHHH
Q 005044 210 --PPLV-ELLEF-TDTK-------VQRAAAGALRTLAFKNDENKNQIVECNALP----------------------TLIL 256 (717)
Q Consensus 210 --~~L~-~ll~~-~~~~-------v~~~a~~~L~~L~~~~~~~~~~~~~~g~i~----------------------~L~~ 256 (717)
..+. ++... ..+. ....-+.+-+.+....+.++........++ .+..
T Consensus 305 ~l~c~~a~~~sklq~~~~e~~~~~~~~ellf~~~sl~a~~~~~~~i~l~e~~i~~~~~~~~~i~~~k~~l~~~t~~~l~~ 384 (678)
T KOG1293|consen 305 VLFCILARFASKLQLPQHEEATLKTTTELLFICASLAASDEKYRLILLNETLILNHLEYGLEISLKKEILETTTESHLMC 384 (678)
T ss_pred hhHHHHHHHHHhhhhHHhhhhhhhhHHHHHHHHHHHhhcchhhhHHHhhhhhhhhhhhhhcchhHHHHHHHHHHHHHHcc
Confidence 0000 01100 0111 111222223333333444443333221111 1111
Q ss_pred HHcCCCHHHHHHHHHHHHHhhcCChHHHHHHHHcCChHHHHHhhccCChHHHHHHHHHHHHHhcCChhhHHHHHhcCChH
Q 005044 257 MLRSEDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLSSCCSESQREAALLLGQFAATDSDCKVHIVQRGAVR 336 (717)
Q Consensus 257 ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~l~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~l~~~~~l~ 336 (717)
.....+..++..|+-++.+++.+....+..+-...+..++++++.+++..+...+.++++|+.......+..++..|++.
T Consensus 385 ~~~~kd~~~~aaa~l~~~s~srsV~aL~tg~~~~dv~~plvqll~dp~~~i~~~~lgai~NlVmefs~~kskfl~~ngId 464 (678)
T KOG1293|consen 385 LPPIKDHDFVAAALLCLKSFSRSVSALRTGLKRNDVAQPLVQLLMDPEIMIMGITLGAICNLVMEFSNLKSKFLRNNGID 464 (678)
T ss_pred ccccccHHHHHHHHHHHHHHHHHHHHHHcCCccchhHHHHHHHhhCcchhHHHHHHHHHHHHHhhcccHHHHHHHcCcHH
Confidence 11234667888888888888766555555555677899999999999999999999999999988888899999999999
Q ss_pred HHHHHhcCCCHHHHHHHHHHHHHhhcCCCCch--hhHhcCChHHHHHhhcCCChhHHHHHHHHHHhccCCC
Q 005044 337 PLIEMLQSPDVQLREMSAFALGRLAQDMHNQA--GIAHNGGLVPLLKLLDSKNGSLQHNAAFALYGLADNE 405 (717)
Q Consensus 337 ~L~~~l~~~~~~v~~~a~~~L~~l~~~~~~~~--~l~~~~~l~~L~~ll~~~~~~v~~~a~~~L~~l~~~~ 405 (717)
.+.+++.+.++.++..+.|+|.++.-+.+... .....-+...+..+..++++.|++.+...|+|+..+.
T Consensus 465 ~l~s~~~~~~~n~r~~~~~~Lr~l~f~~de~~k~~~~~ki~a~~i~~l~nd~d~~Vqeq~fqllRNl~c~~ 535 (678)
T KOG1293|consen 465 ILESMLTDPDFNSRANSLWVLRHLMFNCDEEEKFQLLAKIPANLILDLINDPDWAVQEQCFQLLRNLTCNS 535 (678)
T ss_pred HHHHHhcCCCchHHHHHHHHHHHHHhcchHHHHHHHHHHhhHHHHHHHHhCCCHHHHHHHHHHHHHhhcCc
Confidence 99999999999999999999999998766543 3333334455778889999999999999999997654
No 54
>KOG2160 consensus Armadillo/beta-catenin-like repeat-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=99.15 E-value=4e-09 Score=101.56 Aligned_cols=185 Identities=22% Similarity=0.244 Sum_probs=161.2
Q ss_pred HHHHHHHHHHHHHHHhhcChhhHHHHHhCCChHHHHHhhcCCCCCccccCCCccchHHHhHHHHHHHHhc-CChhhHHHH
Q 005044 75 ADRAAAKRATHVLAELAKNEEVVNWIVEGGAVPALVKHLQAPPTSEADRNLKPFEHEVEKGSAFALGLLA-VKPEHQQLI 153 (717)
Q Consensus 75 ~~~~~~~~a~~~L~~l~~~~~~~~~~~~~g~i~~L~~lL~~~~~~~~~~~~~~~~~~v~~~a~~~L~~l~-~~~~~~~~~ 153 (717)
.+..-+..|+.-|..++.+-++...++..|++..++.++++++. .+|..|+++++..+ ++|..+..+
T Consensus 95 ~~le~ke~ald~Le~lve~iDnAndl~~~ggl~~ll~~l~~~~~------------~lR~~Aa~Vigt~~qNNP~~Qe~v 162 (342)
T KOG2160|consen 95 VDLEDKEDALDNLEELVEDIDNANDLISLGGLVPLLGYLENSDA------------ELRELAARVIGTAVQNNPKSQEQV 162 (342)
T ss_pred CCHHHHHHHHHHHHHHHHhhhhHHhHhhccCHHHHHHHhcCCcH------------HHHHHHHHHHHHHHhcCHHHHHHH
Confidence 34445899999999999988999999999999999999999888 99999999999999 999999999
Q ss_pred HhCCChHHHHHHHhccccCCCccchhHHHHHHHHHHHHHhhcCchhhhHHHhcCCcHHHHHhhcC--CCHHHHHHHHHHH
Q 005044 154 VDNGALSHLVNLLKRHMDSNCSRAVNSVIRRAADAITNLAHENSSIKTRVRMEGGIPPLVELLEF--TDTKVQRAAAGAL 231 (717)
Q Consensus 154 ~~~~~i~~L~~lL~~~~~~~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~--~~~~v~~~a~~~L 231 (717)
.+.|+++.|+..+..+.+. .++..|+.+++.+...++.....+...++...|...+.+ .+..++..++..+
T Consensus 163 ~E~~~L~~Ll~~ls~~~~~-------~~r~kaL~AissLIRn~~~g~~~fl~~~G~~~L~~vl~~~~~~~~lkrK~~~Ll 235 (342)
T KOG2160|consen 163 IELGALSKLLKILSSDDPN-------TVRTKALFAISSLIRNNKPGQDEFLKLNGYQVLRDVLQSNNTSVKLKRKALFLL 235 (342)
T ss_pred HHcccHHHHHHHHccCCCc-------hHHHHHHHHHHHHHhcCcHHHHHHHhcCCHHHHHHHHHcCCcchHHHHHHHHHH
Confidence 9999999999999966553 888999999999999999999999999999999999988 5678889999999
Q ss_pred HHhhccChhhHHHHHhcCCHHHHHHHHcCCCHHHHHHHHHHHHHhhc
Q 005044 232 RTLAFKNDENKNQIVECNALPTLILMLRSEDSAIHYEAVGVIGNLVH 278 (717)
Q Consensus 232 ~~L~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~v~~~a~~~L~~l~~ 278 (717)
..|...+......+...+....+..+....+.++...++.++..+..
T Consensus 236 ~~Ll~~~~s~~d~~~~~~f~~~~~~l~~~l~~~~~e~~l~~~l~~l~ 282 (342)
T KOG2160|consen 236 SLLLQEDKSDEDIASSLGFQRVLENLISSLDFEVNEAALTALLSLLS 282 (342)
T ss_pred HHHHHhhhhhhhHHHHhhhhHHHHHHhhccchhhhHHHHHHHHHHHH
Confidence 99998666666666666666777777777788888888888777643
No 55
>KOG3678 consensus SARM protein (with sterile alpha and armadillo motifs) [Extracellular structures]
Probab=99.14 E-value=6.2e-10 Score=108.70 Aligned_cols=309 Identities=17% Similarity=0.158 Sum_probs=223.4
Q ss_pred HHHhcCCHHHHHHHHcCCCH--HHHHHHHHHHHHhhcCChHHHHHHHHcCChHHHHHhhcc-CChHHHHHHHHHHHHHhc
Q 005044 244 QIVECNALPTLILMLRSEDS--AIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLSS-CCSESQREAALLLGQFAA 320 (717)
Q Consensus 244 ~~~~~g~i~~L~~ll~~~~~--~v~~~a~~~L~~l~~~~~~~~~~~~~~g~l~~L~~ll~~-~~~~~~~~a~~~L~~l~~ 320 (717)
.+...|+++.|++++..++. .|+.+|.+.|..+.. .+++..+...| +..++.+-+. ...+..+..+.+|.++-.
T Consensus 175 ~iR~~~~lD~Llrmf~aPn~et~vRve~~rlLEq~~~--aeN~d~va~~~-~~~Il~lAK~~e~~e~aR~~~~il~~mFK 251 (832)
T KOG3678|consen 175 AIRLDGGLDLLLRMFQAPNLETSVRVEAARLLEQILV--AENRDRVARIG-LGVILNLAKEREPVELARSVAGILEHMFK 251 (832)
T ss_pred HhhccchHHHHHHHHhCCchhHHHHHHHHHHHHHHHh--hhhhhHHhhcc-chhhhhhhhhcCcHHHHHHHHHHHHHHhh
Confidence 45567899999999998865 569999999999864 34556666666 5555555544 447888999999999998
Q ss_pred CChhhHHHHHhcCChHHHHHHhcCCCHHHHHHHHHHHHHhhcC--CCCchhhHhcCChHHHHHhhcCCChhHHHHHHHHH
Q 005044 321 TDSDCKVHIVQRGAVRPLIEMLQSPDVQLREMSAFALGRLAQD--MHNQAGIAHNGGLVPLLKLLDSKNGSLQHNAAFAL 398 (717)
Q Consensus 321 ~~~~~~~~l~~~~~l~~L~~~l~~~~~~v~~~a~~~L~~l~~~--~~~~~~l~~~~~l~~L~~ll~~~~~~v~~~a~~~L 398 (717)
+.++....++..|++..++-+.+..+|.+...++.+|+|++-+ ...+..+++..+.+.|..+..+.+.-.+..||.++
T Consensus 252 HSeet~~~Lvaa~~lD~vl~~~rRt~P~lLRH~ALAL~N~~L~~~~a~qrrmveKr~~EWLF~LA~skDel~R~~AClAV 331 (832)
T KOG3678|consen 252 HSEETCQRLVAAGGLDAVLYWCRRTDPALLRHCALALGNCALHGGQAVQRRMVEKRAAEWLFPLAFSKDELLRLHACLAV 331 (832)
T ss_pred hhHHHHHHHHhhcccchheeecccCCHHHHHHHHHHhhhhhhhchhHHHHHHHHhhhhhhhhhhhcchHHHHHHHHHHHH
Confidence 8899999999999999999999999999999999999999864 34567899999999999998888999999999999
Q ss_pred HhccCCCcchHHHHHhcCccccccchhHHhhhHHHHHHHHHHHHHHhhhchHHHHHHHHhhcchhHHHHHHHHHHhccCC
Q 005044 399 YGLADNEDNVADFIRVGGVQKLQDGEFIVQATKDCVAKTLKRLEEKIHGRVLNHLLYLMRVAEKGVQRRVALALAHLCSP 478 (717)
Q Consensus 399 ~~l~~~~~~~~~l~~~~~i~~L~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~L~~ll~~~~~~v~~~a~~aL~~l~~~ 478 (717)
+-|+.+.+.-..+...|.+....-......+..-.. + ...-..-...+.+.+|+.+|.+...+.|..++.-++.-+..
T Consensus 332 ~vlat~KE~E~~VrkS~TlaLVEPlva~~DP~~FAR-D-~hd~aQG~~~d~LqRLvPlLdS~R~EAq~i~AF~l~~EAaI 409 (832)
T KOG3678|consen 332 AVLATNKEVEREVRKSGTLALVEPLVASLDPGRFAR-D-AHDYAQGRGPDDLQRLVPLLDSNRLEAQCIGAFYLCAEAAI 409 (832)
T ss_pred hhhhhhhhhhHHHhhccchhhhhhhhhccCcchhhh-h-hhhhhccCChHHHHHhhhhhhcchhhhhhhHHHHHHHHHHH
Confidence 999998888777777775443222211111111000 0 00000111334788999999987777777666666554433
Q ss_pred CC---CceeeecCCCHHHHHHHhcCCCchhhhhhHHHHHHhhhccc-ccCccCCCCCCCCccccch--------HHhhcC
Q 005044 479 DD---QRTIFIDGGGLELLLGLLGSTNPKQQLDGAVALFKLANKAT-TLSSVDAAPPSPTPQVYLG--------DQFVNN 546 (717)
Q Consensus 479 ~~---~~~~~~~~~~l~~L~~ll~~~~~~v~~~a~~~l~~L~~~~~-~~~~~~~~~~~~~~~~~l~--------~~~~~~ 546 (717)
.. ..+.+-+.|+++.|.++.++++..-...|.++|.-|....+ ...+.++.|.-...+.+.. ++|.+.
T Consensus 410 Ks~Q~K~kVFseIGAIQaLKevaSS~d~vaakfAseALtviGEEVP~~l~~qVPgWt~AdVQ~WvkkIGFeeY~EkFakQ 489 (832)
T KOG3678|consen 410 KSLQGKTKVFSEIGAIQALKEVASSPDEVAAKFASEALTVIGEEVPYKLAQQVPGWTCADVQYWVKKIGFEEYVEKFAKQ 489 (832)
T ss_pred HHhccchhHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHhccccChhhhccCCCcchHHHHHHHHHhCHHHHHHHHHHH
Confidence 22 34466678999999999998888778888888888876532 2333445554444444332 577778
Q ss_pred CCCccEEEEEc
Q 005044 547 ATLSDVTFLVE 557 (717)
Q Consensus 547 ~~~~Dv~~~~~ 557 (717)
....|+.+.+.
T Consensus 490 ~VDGDLLLqLT 500 (832)
T KOG3678|consen 490 MVDGDLLLQLT 500 (832)
T ss_pred hccchHHHhhh
Confidence 88888876653
No 56
>KOG0168 consensus Putative ubiquitin fusion degradation protein [Posttranslational modification, protein turnover, chaperones]
Probab=99.01 E-value=6.2e-08 Score=101.90 Aligned_cols=219 Identities=19% Similarity=0.208 Sum_probs=175.5
Q ss_pred HHHHHHHHHhhhhhccccchHHHHHHHHHHHHHHHHhhc-ChhhHHHHHhCCChHHHHHhhcC-CCCCccccCCCccchH
Q 005044 54 ALLSEVSAQVNVLNTTFSWLEADRAAAKRATHVLAELAK-NEEVVNWIVEGGAVPALVKHLQA-PPTSEADRNLKPFEHE 131 (717)
Q Consensus 54 ~~~~~i~~l~~~L~~~~~~~~~~~~~~~~a~~~L~~l~~-~~~~~~~~~~~g~i~~L~~lL~~-~~~~~~~~~~~~~~~~ 131 (717)
.+.+.+|.++.+|... .+.++...|+++|.+++. -|.....++..|+||.|++-|.. .-- +
T Consensus 208 pv~slvp~Lv~LL~~E-----~n~DIMl~AcRaltyl~evlP~S~a~vV~~~aIPvl~~kL~~Ieyi------------D 270 (1051)
T KOG0168|consen 208 PVKSLVPVLVALLSHE-----HNFDIMLLACRALTYLCEVLPRSSAIVVDEHAIPVLLEKLLTIEYI------------D 270 (1051)
T ss_pred cHHHHHHHHHHHHhcc-----ccHHHHHHHHHHHHHHHhhccchhheeecccchHHHHHhhhhhhhh------------H
Confidence 3456677777776654 356789999999999999 68889999999999999886654 333 8
Q ss_pred HHhHHHHHHHHhc-CChhhHHHHHhCCChHHHHHHHhccccCCCccchhHHHHHHHHHHHHHhhcCchh-hhHHHhcCCc
Q 005044 132 VEKGSAFALGLLA-VKPEHQQLIVDNGALSHLVNLLKRHMDSNCSRAVNSVIRRAADAITNLAHENSSI-KTRVRMEGGI 209 (717)
Q Consensus 132 v~~~a~~~L~~l~-~~~~~~~~~~~~~~i~~L~~lL~~~~~~~~~~~~~~~~~~a~~~L~~l~~~~~~~-~~~~~~~~~i 209 (717)
|-++++.+|-.|+ ..+ .++++.|++...+.+|.--.. ..++.|+.+..|.|..-..- -..+ ...+
T Consensus 271 vAEQ~LqALE~iSR~H~---~AiL~AG~l~a~LsylDFFSi--------~aQR~AlaiaaN~Cksi~sd~f~~v--~eal 337 (1051)
T KOG0168|consen 271 VAEQSLQALEKISRRHP---KAILQAGALSAVLSYLDFFSI--------HAQRVALAIAANCCKSIRSDEFHFV--MEAL 337 (1051)
T ss_pred HHHHHHHHHHHHHhhcc---HHHHhcccHHHHHHHHHHHHH--------HHHHHHHHHHHHHHhcCCCccchHH--HHHH
Confidence 9999999999998 333 467899999999999988765 89999999999999743222 1222 2578
Q ss_pred HHHHHhhcCCCHHHHHHHHHHHHHhhc---cChhhHHHHHhcCCHHHHHHHHcCCC----HHHHHHHHHHHHHhhcCChH
Q 005044 210 PPLVELLEFTDTKVQRAAAGALRTLAF---KNDENKNQIVECNALPTLILMLRSED----SAIHYEAVGVIGNLVHSSPN 282 (717)
Q Consensus 210 ~~L~~ll~~~~~~v~~~a~~~L~~L~~---~~~~~~~~~~~~g~i~~L~~ll~~~~----~~v~~~a~~~L~~l~~~~~~ 282 (717)
|.|..+|...+....+.++-++..++. +.++.-++++..|++....+++.-.. ..+....++.+..++.+.+.
T Consensus 338 PlL~~lLs~~D~k~ies~~ic~~ri~d~f~h~~~kLdql~s~dLi~~~~qLlsvt~t~Ls~~~~~~vIrmls~msS~~pl 417 (1051)
T KOG0168|consen 338 PLLTPLLSYQDKKPIESVCICLTRIADGFQHGPDKLDQLCSHDLITNIQQLLSVTPTILSNGTYTGVIRMLSLMSSGSPL 417 (1051)
T ss_pred HHHHHHHhhccchhHHHHHHHHHHHHHhcccChHHHHHHhchhHHHHHHHHHhcCcccccccchhHHHHHHHHHccCChH
Confidence 999999999999999999999999975 34566777888999999999987542 35677788889999888888
Q ss_pred HHHHHHHcCChHHHHHhhcc
Q 005044 283 IKKEVLAAGALQPVIGLLSS 302 (717)
Q Consensus 283 ~~~~~~~~g~l~~L~~ll~~ 302 (717)
....+...++...|..+|..
T Consensus 418 ~~~tl~k~~I~~~L~~il~g 437 (1051)
T KOG0168|consen 418 LFRTLLKLDIADTLKRILQG 437 (1051)
T ss_pred HHHHHHHhhHHHHHHHHHhc
Confidence 88888888888888888864
No 57
>KOG1241 consensus Karyopherin (importin) beta 1 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=98.99 E-value=1.7e-07 Score=97.69 Aligned_cols=439 Identities=18% Similarity=0.161 Sum_probs=257.9
Q ss_pred HHHHHHHHhhhhhccccchHHHHHHHHHHHHHHHHhhc-Ch-hhHHHHHhCCChHHHHHhhcCCCCCccccCCCccchHH
Q 005044 55 LLSEVSAQVNVLNTTFSWLEADRAAAKRATHVLAELAK-NE-EVVNWIVEGGAVPALVKHLQAPPTSEADRNLKPFEHEV 132 (717)
Q Consensus 55 ~~~~i~~l~~~L~~~~~~~~~~~~~~~~a~~~L~~l~~-~~-~~~~~~~~~g~i~~L~~lL~~~~~~~~~~~~~~~~~~v 132 (717)
.......++..+.......+++..+|+.|+.+|.+-.. .. ......-..=++....+.-+.++. ++
T Consensus 166 l~~~sN~iLtaIv~gmrk~e~s~~vRLaa~~aL~nsLef~~~nF~~E~ern~iMqvvcEatq~~d~------------~i 233 (859)
T KOG1241|consen 166 LEQQSNDILTAIVQGMRKEETSAAVRLAALNALYNSLEFTKANFNNEMERNYIMQVVCEATQSPDE------------EI 233 (859)
T ss_pred HHHHHhHHHHHHHhhccccCCchhHHHHHHHHHHHHHHHHHHhhccHhhhceeeeeeeecccCCcH------------HH
Confidence 33334444555555555555666688888888877543 11 111111111124444455455544 99
Q ss_pred HhHHHHHHHHhc-CChhhHHHHHhCCChHHHHHHHhccccCCCccchhHHHHHHHHHHHHHhhcCchh------------
Q 005044 133 EKGSAFALGLLA-VKPEHQQLIVDNGALSHLVNLLKRHMDSNCSRAVNSVIRRAADAITNLAHENSSI------------ 199 (717)
Q Consensus 133 ~~~a~~~L~~l~-~~~~~~~~~~~~~~i~~L~~lL~~~~~~~~~~~~~~~~~~a~~~L~~l~~~~~~~------------ 199 (717)
+..|+.+|.+|. -..+.-..-.....+..-+.-+++.++ ++...++...+++|...-+.
T Consensus 234 ~~aa~~ClvkIm~LyY~~m~~yM~~alfaitl~amks~~d--------eValQaiEFWsticeEEiD~~~e~~e~~d~~~ 305 (859)
T KOG1241|consen 234 QVAAFQCLVKIMSLYYEFMEPYMEQALFAITLAAMKSDND--------EVALQAIEFWSTICEEEIDLAIEYGEAVDQGL 305 (859)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcH--------HHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCC
Confidence 999999999998 444443333333445555556665555 88888888888888522110
Q ss_pred ---hhHHH---hcCCcHHHHHhhcC-------CCHHHHHHHHHHHHHhhccChhhHHHHHhcCCHHHHHHHHcCCCHHHH
Q 005044 200 ---KTRVR---MEGGIPPLVELLEF-------TDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSEDSAIH 266 (717)
Q Consensus 200 ---~~~~~---~~~~i~~L~~ll~~-------~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~v~ 266 (717)
...+. ..+.+|.|+++|.+ +++.....|..||.-++... ...++. .++|.+-+-+++++-.-+
T Consensus 306 ~p~~~~fa~~a~~~v~P~Ll~~L~kqde~~d~DdWnp~kAAg~CL~l~A~~~---~D~Iv~-~Vl~Fiee~i~~pdwr~r 381 (859)
T KOG1241|consen 306 PPSSKYFARQALQDVVPVLLELLTKQDEDDDDDDWNPAKAAGVCLMLFAQCV---GDDIVP-HVLPFIEENIQNPDWRNR 381 (859)
T ss_pred CchhhHHHHHHHhHhhHHHHHHHHhCCCCcccccCcHHHHHHHHHHHHHHHh---cccchh-hhHHHHHHhcCCcchhhh
Confidence 01111 12567888888854 24667777777777666411 112222 244444445667888889
Q ss_pred HHHHHHHHHhhcCChHHHHHHHHcCChHHHHHhhccCChHHHHHHHHHHHHHhcCChhhHH-HHHhcCChHHHHHHhcCC
Q 005044 267 YEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLSSCCSESQREAALLLGQFAATDSDCKV-HIVQRGAVRPLIEMLQSP 345 (717)
Q Consensus 267 ~~a~~~L~~l~~~~~~~~~~~~~~g~l~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~-~l~~~~~l~~L~~~l~~~ 345 (717)
..++.+++.+..+.+..+..-+..+++|.++.++.+++--++..++|+++.++...++... ...-.+.++.++..|. .
T Consensus 382 eaavmAFGSIl~gp~~~~Lt~iV~qalp~ii~lm~D~sl~VkdTaAwtlgrI~d~l~e~~~n~~~l~~~l~~l~~gL~-D 460 (859)
T KOG1241|consen 382 EAAVMAFGSILEGPEPDKLTPIVIQALPSIINLMSDPSLWVKDTAAWTLGRIADFLPEAIINQELLQSKLSALLEGLN-D 460 (859)
T ss_pred hHHHHHHHhhhcCCchhhhhHHHhhhhHHHHHHhcCchhhhcchHHHHHHHHHhhchhhcccHhhhhHHHHHHHHHhh-h
Confidence 9999999999888776666667788999999999988888999999999999976664432 2223455666666664 4
Q ss_pred CHHHHHHHHHHHHHhhcC-----CCC-chhhHhcCChHHHHH-hh---c--C-CChhHHHHHHHHHHhccCCC-cchHHH
Q 005044 346 DVQLREMSAFALGRLAQD-----MHN-QAGIAHNGGLVPLLK-LL---D--S-KNGSLQHNAAFALYGLADNE-DNVADF 411 (717)
Q Consensus 346 ~~~v~~~a~~~L~~l~~~-----~~~-~~~l~~~~~l~~L~~-ll---~--~-~~~~v~~~a~~~L~~l~~~~-~~~~~l 411 (717)
.|.+..++||++.+|+.. ..+ +..... ...+.++. ++ + + .+...|..|-.+|..|..+. ...-.+
T Consensus 461 ePrva~N~CWAf~~Laea~~eA~~s~~qt~~~t-~~y~~ii~~Ll~~tdr~dgnqsNLR~AAYeALmElIk~st~~vy~~ 539 (859)
T KOG1241|consen 461 EPRVASNVCWAFISLAEAAYEAAVSNGQTDPAT-PFYEAIIGSLLKVTDRADGNQSNLRSAAYEALMELIKNSTDDVYPM 539 (859)
T ss_pred CchHHHHHHHHHHHHHHHHHHhccCCCCCCccc-hhHHHHHHHHHhhccccccchhhHHHHHHHHHHHHHHcCcHHHHHH
Confidence 778999999999999942 111 222222 33334333 22 2 1 35678888889998886542 222222
Q ss_pred HHhcCccccc-----------cchh--HHhhhHHHHHHHHHHHHHH-------hhhchHHHHHHHHhhc-chhHHHHHHH
Q 005044 412 IRVGGVQKLQ-----------DGEF--IVQATKDCVAKTLKRLEEK-------IHGRVLNHLLYLMRVA-EKGVQRRVAL 470 (717)
Q Consensus 412 ~~~~~i~~L~-----------~~~~--~~~~~~~~~~~~~~~l~~~-------~~~~~~~~L~~ll~~~-~~~v~~~a~~ 470 (717)
+..-..-.+. +... .+......+...++.+..+ ....++.-++.++.++ +..+...|..
T Consensus 540 v~~~~l~il~kl~q~i~~~~l~~~dr~q~~eLQs~Lc~~Lq~i~rk~~~~~~~~~d~iM~lflri~~s~~s~~v~e~a~l 619 (859)
T KOG1241|consen 540 VQKLTLVILEKLDQTISSQILSLADRAQLNELQSLLCNTLQSIIRKVGSDIREVSDQIMGLFLRIFESKRSAVVHEEAFL 619 (859)
T ss_pred HHHHHHHHHHHHHHHHHHHhccHhhHHHHHHHHHHHHHHHHHHHHHccccchhHHHHHHHHHHHHHcCCccccchHHHHH
Confidence 2111000000 0000 1111122222222222221 2446788888888883 5567788888
Q ss_pred HHHhccCCCCCceeeecCCCHHHHHHHhcC-CCchhhhhhHHHHHHhhhc
Q 005044 471 ALAHLCSPDDQRTIFIDGGGLELLLGLLGS-TNPKQQLDGAVALFKLANK 519 (717)
Q Consensus 471 aL~~l~~~~~~~~~~~~~~~l~~L~~ll~~-~~~~v~~~a~~~l~~L~~~ 519 (717)
+++.++..-..+..-.-....|.|..-+++ .+..|-..|...+..|++.
T Consensus 620 aV~tl~~~Lg~~F~kym~~f~pyL~~gL~n~~e~qVc~~aVglVgdl~ra 669 (859)
T KOG1241|consen 620 AVSTLAESLGKGFAKYMPAFKPYLLMGLSNFQEYQVCAAAVGLVGDLARA 669 (859)
T ss_pred HHHHHHHHHhHhHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHH
Confidence 888876553333322234456667666643 5555666666677777664
No 58
>KOG1062 consensus Vesicle coat complex AP-1, gamma subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.98 E-value=9.2e-07 Score=93.08 Aligned_cols=398 Identities=17% Similarity=0.194 Sum_probs=252.7
Q ss_pred HhhhhhccccchHHHHHHHHHHHHHHHHhhcChhhHHHHHhCCChHHHHHhhcCCCCCccccCCCccchHHHhHHHHHHH
Q 005044 62 QVNVLNTTFSWLEADRAAAKRATHVLAELAKNEEVVNWIVEGGAVPALVKHLQAPPTSEADRNLKPFEHEVEKGSAFALG 141 (717)
Q Consensus 62 l~~~L~~~~~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~g~i~~L~~lL~~~~~~~~~~~~~~~~~~v~~~a~~~L~ 141 (717)
+...|+..+.+. +..++-.|+.+|++++.- +-.+. ..|-+.++|++.++ -+|..|+.|..
T Consensus 108 ltNslknDL~s~--nq~vVglAL~alg~i~s~-Emard-----lapeVe~Ll~~~~~------------~irKKA~Lca~ 167 (866)
T KOG1062|consen 108 LTNSLKNDLNSS--NQYVVGLALCALGNICSP-EMARD-----LAPEVERLLQHRDP------------YIRKKAALCAV 167 (866)
T ss_pred HHHHHHhhccCC--CeeehHHHHHHhhccCCH-HHhHH-----hhHHHHHHHhCCCH------------HHHHHHHHHHH
Confidence 344455555444 555678888888888763 33322 35888889988766 99999999999
Q ss_pred Hhc-CChhhHHHHHhCCChHHHHHHHhccccCCCccchhHHHHHHHHHHHHHhhcCchhhhHHHhcCCcHHHHHhhcC--
Q 005044 142 LLA-VKPEHQQLIVDNGALSHLVNLLKRHMDSNCSRAVNSVIRRAADAITNLAHENSSIKTRVRMEGGIPPLVELLEF-- 218 (717)
Q Consensus 142 ~l~-~~~~~~~~~~~~~~i~~L~~lL~~~~~~~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~-- 218 (717)
.+. ..|+..+ .+++...++|.+.+. .+...++..+..+|..+++.-..+.+ .++.++..|+.
T Consensus 168 r~irK~P~l~e-----~f~~~~~~lL~ek~h--------GVL~~~l~l~~e~c~~~~~~l~~fr~--l~~~lV~iLk~l~ 232 (866)
T KOG1062|consen 168 RFIRKVPDLVE-----HFVIAFRKLLCEKHH--------GVLIAGLHLITELCKISPDALSYFRD--LVPSLVKILKQLT 232 (866)
T ss_pred HHHHcCchHHH-----HhhHHHHHHHhhcCC--------ceeeeHHHHHHHHHhcCHHHHHHHHH--HHHHHHHHHHHHh
Confidence 999 7777543 345677788877766 67777888888999877765544443 56666666641
Q ss_pred -------------CCHHHHHHHHHHHHHhhccChhhHHHHHhcCCHHHHHHHHcCC------CHHHHHHHHHHHHHhhcC
Q 005044 219 -------------TDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSE------DSAIHYEAVGVIGNLVHS 279 (717)
Q Consensus 219 -------------~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~g~i~~L~~ll~~~------~~~v~~~a~~~L~~l~~~ 279 (717)
++|-++...++.|+-|-.++++..+.|.+ .|-+..... -..+..+++.+|..+-.
T Consensus 233 ~~~yspeydv~gi~dPFLQi~iLrlLriLGq~d~daSd~M~D-----iLaqvatntdsskN~GnAILYE~V~TI~~I~~- 306 (866)
T KOG1062|consen 233 NSGYSPEYDVHGISDPFLQIRILRLLRILGQNDADASDLMND-----ILAQVATNTDSSKNAGNAILYECVRTIMDIRS- 306 (866)
T ss_pred cCCCCCccCccCCCchHHHHHHHHHHHHhcCCCccHHHHHHH-----HHHHHHhcccccccchhHHHHHHHHHHHhccC-
Confidence 46889999999999999876666655553 344444432 23678888888888733
Q ss_pred ChHHHHHHHHcCChHHHHHhhccCChHHHHHHHHHHHHHhcCChhhHHHHHhcCChHHHHHHhcCCCHHHHHHHHHHHHH
Q 005044 280 SPNIKKEVLAAGALQPVIGLLSSCCSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQSPDVQLREMSAFALGR 359 (717)
Q Consensus 280 ~~~~~~~~~~~g~l~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~l~~~~~l~~L~~~l~~~~~~v~~~a~~~L~~ 359 (717)
+...+.. ++..|-++|.+.+..+|.-++..|......++...+.-. ..+++.|+++|..++..|+..+..
T Consensus 307 ~~~Lrvl-----ainiLgkFL~n~d~NirYvaLn~L~r~V~~d~~avqrHr-----~tIleCL~DpD~SIkrralELs~~ 376 (866)
T KOG1062|consen 307 NSGLRVL-----AINILGKFLLNRDNNIRYVALNMLLRVVQQDPTAVQRHR-----STILECLKDPDVSIKRRALELSYA 376 (866)
T ss_pred CchHHHH-----HHHHHHHHhcCCccceeeeehhhHHhhhcCCcHHHHHHH-----HHHHHHhcCCcHHHHHHHHHHHHH
Confidence 2332222 467788888888888888888888888766655443332 568899999999999999998888
Q ss_pred hhcCCCCchhhHhcCChHHHHHhhcCCChhHHHHHHHHHHhccC--CCcchHHHHHhc-CccccccchhHHhhhHHHHHH
Q 005044 360 LAQDMHNQAGIAHNGGLVPLLKLLDSKNGSLQHNAAFALYGLAD--NEDNVADFIRVG-GVQKLQDGEFIVQATKDCVAK 436 (717)
Q Consensus 360 l~~~~~~~~~l~~~~~l~~L~~ll~~~~~~v~~~a~~~L~~l~~--~~~~~~~l~~~~-~i~~L~~~~~~~~~~~~~~~~ 436 (717)
|......+ . .+..|+..|.+.+++.+..+..-+..++. .++.+..+-..- ++.. .+.+........+..
T Consensus 377 lvn~~Nv~-~-----mv~eLl~fL~~~d~~~k~~~as~I~~laEkfaP~k~W~idtml~Vl~~--aG~~V~~dv~~nll~ 448 (866)
T KOG1062|consen 377 LVNESNVR-V-----MVKELLEFLESSDEDFKADIASKIAELAEKFAPDKRWHIDTMLKVLKT--AGDFVNDDVVNNLLR 448 (866)
T ss_pred HhccccHH-H-----HHHHHHHHHHhccHHHHHHHHHHHHHHHHhcCCcchhHHHHHHHHHHh--cccccchhhHHHHHH
Confidence 87643322 1 35567888888898999888888888875 233333222110 0000 000000011111111
Q ss_pred HHHHH-HHHhhhchHHHHHH------HHhhcchhHHHHHHHHHHhcc----CC--CCCceeeecCCCHHHHHHHhcC--C
Q 005044 437 TLKRL-EEKIHGRVLNHLLY------LMRVAEKGVQRRVALALAHLC----SP--DDQRTIFIDGGGLELLLGLLGS--T 501 (717)
Q Consensus 437 ~~~~l-~~~~~~~~~~~L~~------ll~~~~~~v~~~a~~aL~~l~----~~--~~~~~~~~~~~~l~~L~~ll~~--~ 501 (717)
.+.+- .+. +...+.+|.. ++.-+.+.+...+.|+|+... .+ .+.--.+-+..++..|..++.+ .
T Consensus 449 LIa~~~~e~-~~y~~~rLy~a~~~~~~~~is~e~l~qVa~W~IGEYGdlll~~~~~~~p~~vtesdivd~l~~v~~~~~s 527 (866)
T KOG1062|consen 449 LIANAFQEL-HEYAVLRLYLALSEDTLLDISQEPLLQVASWCIGEYGDLLLDGANEEEPIKVTESDIVDKLEKVLMSHSS 527 (866)
T ss_pred HHhcCCcch-hhHHHHHHHHHHhhhhhhhhhhhhHHHHHHHHhhhhhHHhhcCccccCCCcCCHHHHHHHHHHHHHhccc
Confidence 11110 000 1111111111 122345566778899998764 11 1112233456778888888865 5
Q ss_pred CchhhhhhHHHHHHhhhc
Q 005044 502 NPKQQLDGAVALFKLANK 519 (717)
Q Consensus 502 ~~~v~~~a~~~l~~L~~~ 519 (717)
+..++.+|..++..|+..
T Consensus 528 ~~~tk~yal~Al~KLSsr 545 (866)
T KOG1062|consen 528 DSTTKGYALTALLKLSSR 545 (866)
T ss_pred hHHHHHHHHHHHHHHHhh
Confidence 677899999999999875
No 59
>KOG2759 consensus Vacuolar H+-ATPase V1 sector, subunit H [Energy production and conversion]
Probab=98.97 E-value=1.8e-07 Score=91.34 Aligned_cols=345 Identities=14% Similarity=0.154 Sum_probs=222.5
Q ss_pred hHHHHHHHhccccCCCccchhHHHHHHHHHHHHHhhcCchhhhHHHh------cCCcHHHHHhhcCCCHHHHHHHHHHHH
Q 005044 159 LSHLVNLLKRHMDSNCSRAVNSVIRRAADAITNLAHENSSIKTRVRM------EGGIPPLVELLEFTDTKVQRAAAGALR 232 (717)
Q Consensus 159 i~~L~~lL~~~~~~~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~------~~~i~~L~~ll~~~~~~v~~~a~~~L~ 232 (717)
+..++.+++....+ +..+..+..+..+...+...-..+.. ...-+..+.++...++-+.....+++.
T Consensus 67 v~~fi~LlS~~~kd-------d~v~yvL~li~DmLs~d~sr~~lf~~~a~~~k~~~~~~fl~ll~r~d~~iv~~~~~Ils 139 (442)
T KOG2759|consen 67 VKTFINLLSHIDKD-------DTVQYVLTLIDDMLSEDRSRVDLFHDYAHKLKRTEWLSFLNLLNRQDTFIVEMSFRILS 139 (442)
T ss_pred HHHHHHHhchhhhH-------HHHHHHHHHHHHHHhhCchHHHHHHHHHHhhhccchHHHHHHHhcCChHHHHHHHHHHH
Confidence 55666666665543 56666666666666544332222211 122456788888888888888888888
Q ss_pred HhhccChhhHHHHHhcCCHHHHHHHHcC-CCHHHHHHHHHHHHHhhcCChHHHHHHHHcCChHHHHHhhcc--CChHHHH
Q 005044 233 TLAFKNDENKNQIVECNALPTLILMLRS-EDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLSS--CCSESQR 309 (717)
Q Consensus 233 ~L~~~~~~~~~~~~~~g~i~~L~~ll~~-~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~l~~L~~ll~~--~~~~~~~ 309 (717)
.++.........-...=....|-..+++ .+.+....++++|..+... ++.+-.++.+.++..++..+.+ .+..++.
T Consensus 140 ~la~~g~~~~~~~e~~~~~~~l~~~l~~~~~~~~~~~~~rcLQ~ll~~-~eyR~~~v~adg~~~l~~~l~s~~~~~QlQY 218 (442)
T KOG2759|consen 140 KLACFGNCKMELSELDVYKGFLKEQLQSSTNNDYIQFAARCLQTLLRV-DEYRYAFVIADGVSLLIRILASTKCGFQLQY 218 (442)
T ss_pred HHHHhccccccchHHHHHHHHHHHHHhccCCCchHHHHHHHHHHHhcC-cchhheeeecCcchhhHHHHhccCcchhHHH
Confidence 8875322221110000012233444544 5667788899999998765 6667888888899999988843 4578899
Q ss_pred HHHHHHHHHhcCChhhHHHHHhcCChHHHHHHhcC-CCHHHHHHHHHHHHHhhcCCCCc-------hhhHhcCChHHHHH
Q 005044 310 EAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQS-PDVQLREMSAFALGRLAQDMHNQ-------AGIAHNGGLVPLLK 381 (717)
Q Consensus 310 ~a~~~L~~l~~~~~~~~~~l~~~~~l~~L~~~l~~-~~~~v~~~a~~~L~~l~~~~~~~-------~~l~~~~~l~~L~~ 381 (717)
+.+.+++-|+ .++.....+...+.++.|..++++ ....|-+-++.++.|++...+.+ ..++..++.+. ++
T Consensus 219 qsifciWlLt-Fn~~~ae~~~~~~li~~L~~Ivk~~~KEKV~Rivlai~~Nll~k~~~~~~~k~~~~~mv~~~v~k~-l~ 296 (442)
T KOG2759|consen 219 QSIFCIWLLT-FNPHAAEKLKRFDLIQDLSDIVKESTKEKVTRIVLAIFRNLLDKGPDRETKKDIASQMVLCKVLKT-LQ 296 (442)
T ss_pred HHHHHHHHhh-cCHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCchhhHHHHHHHHHHhcCchHH-HH
Confidence 9999999996 556666777778999999999987 46678888899999999755321 23555554444 44
Q ss_pred hhcC---CChhHHHHHHH-------HHHhccCCCcchHHHHHhcCccccccchhHHhhhH-HHHHHHHHHHHHHhhhchH
Q 005044 382 LLDS---KNGSLQHNAAF-------ALYGLADNEDNVADFIRVGGVQKLQDGEFIVQATK-DCVAKTLKRLEEKIHGRVL 450 (717)
Q Consensus 382 ll~~---~~~~v~~~a~~-------~L~~l~~~~~~~~~l~~~~~i~~L~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~ 450 (717)
.|.. +++++....-. -...|+..++...++.. |-++= ++.... .-+.....++.+ -...++
T Consensus 297 ~L~~rkysDEDL~~di~~L~e~L~~svq~LsSFDeY~sEl~s-G~L~W------SP~Hk~e~FW~eNa~rlne-nnyell 368 (442)
T KOG2759|consen 297 SLEERKYSDEDLVDDIEFLTEKLKNSVQDLSSFDEYKSELRS-GRLEW------SPVHKSEKFWRENADRLNE-NNYELL 368 (442)
T ss_pred HHHhcCCCcHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHh-CCcCC------CccccccchHHHhHHHHhh-ccHHHH
Confidence 4422 35554443332 23333333344333332 22110 000000 111122222211 234589
Q ss_pred HHHHHHHhhcc-hhHHHHHHHHHHhccCC-CCCceeeecCCCHHHHHHHhcCCCchhhhhhHHHHHHhhhccc
Q 005044 451 NHLLYLMRVAE-KGVQRRVALALAHLCSP-DDQRTIFIDGGGLELLLGLLGSTNPKQQLDGAVALFKLANKAT 521 (717)
Q Consensus 451 ~~L~~ll~~~~-~~v~~~a~~aL~~l~~~-~~~~~~~~~~~~l~~L~~ll~~~~~~v~~~a~~~l~~L~~~~~ 521 (717)
..|+++|..++ |-+-..|+.-|+.+... +..+..+.+-||-..+++++.++|++||..|..++..|..+.|
T Consensus 369 kiL~~lLe~s~Dp~iL~VAc~DIge~Vr~yP~gk~vv~k~ggKe~vM~Llnh~d~~Vry~ALlavQ~lm~~~w 441 (442)
T KOG2759|consen 369 KILIKLLETSNDPIILCVACHDIGEYVRHYPEGKAVVEKYGGKERVMNLLNHEDPEVRYHALLAVQKLMVHNW 441 (442)
T ss_pred HHHHHHHhcCCCCceeehhhhhHHHHHHhCchHhHHHHHhchHHHHHHHhcCCCchHHHHHHHHHHHHHhhcc
Confidence 99999999875 88888899999999765 5577788889999999999999999999999999998876643
No 60
>KOG0511 consensus Ankyrin repeat protein [General function prediction only]
Probab=98.96 E-value=4.3e-09 Score=99.87 Aligned_cols=140 Identities=26% Similarity=0.362 Sum_probs=117.8
Q ss_pred eEeehhHHHHhhccHHHHHhhcCCCCCCC-Cc---ceEcCCCCHHHHHHHHHHHhcCccccchhhHHHHHHHHHhhChH-
Q 005044 559 RRFYAHRICLLASSDAFRAMFDGGYREKD-AR---DIEIPNIRWEVFELMMRFIYTGSVDVTLDIAQDLLRAADQYLLE- 633 (717)
Q Consensus 559 ~~~~~h~~il~~~s~~f~~~~~~~~~e~~-~~---~i~l~~~~~~~~~~~l~~~Yt~~~~~~~~~~~~ll~~A~~~~~~- 633 (717)
..+|+|+.+++ |.+||+.||.|+|.|+. .. ...+|.....+.+..++|+|+++.++.++-+.+++..|+++-+.
T Consensus 301 ~RyP~hla~i~-R~eyfk~mf~g~f~e~s~n~~~p~lslp~~~~~vveI~lr~lY~d~tdi~~~~A~dvll~ad~lal~~ 379 (516)
T KOG0511|consen 301 DRYPAHLARIL-RVEYFKSMFVGDFIESSVNDTRPGLSLPSLADVVVEIDLRNLYCDQTDIIFDVASDVLLFADKLALAD 379 (516)
T ss_pred ccccHHHHHHH-HHHHHHHHhccchhhhcCCccccccccchHHHHHHHHHHHHhhcccccchHHHHhhHHHHhhHhhhhh
Confidence 55999999998 99999999999999854 22 45567788899999999999999999999999999999999765
Q ss_pred -h-HHHHHHHHHHhc---CChhcHHHHHHHHHHcCcHHHHHHHHHHHHHhHHHhcCCchhhhchhhcHHHH
Q 005044 634 -G-LKRLCEYTIAQD---ISLENVSSMYELSEAFHAISLRHTCILYIMEHFDKLSTRPGHSNLIQRIIPEI 699 (717)
Q Consensus 634 -~-l~~~c~~~l~~~---i~~~n~~~~~~~a~~~~~~~L~~~~~~~i~~~~~~~~~~~~f~~l~~~~~~~l 699 (717)
. |+......+.+. ++.-+++.++.++.....+.|.+.+..|+.+|+..+...|+|.+..+.....+
T Consensus 380 dr~Lkt~as~~itq~~e~id~y~V~dIl~~~wd~~~~rlEqfa~~~~a~hl~~l~~dPe~~~~~~~s~~ri 450 (516)
T KOG0511|consen 380 DRLLKTAASAEITQWLELIDMYGVLDILEYCWDLVACRLEQFAETHEARHLLLLLPDPEGDSSLRTSVPRI 450 (516)
T ss_pred hhhhhhhhhHHHHHHHHHHHhhhHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHhcCCchhhHHHHhccchh
Confidence 2 566665555544 45567899999999999999999999999999999999999998765554443
No 61
>PTZ00429 beta-adaptin; Provisional
Probab=98.96 E-value=9.4e-07 Score=97.23 Aligned_cols=349 Identities=15% Similarity=0.057 Sum_probs=219.2
Q ss_pred HHHHHHHHHHHhhc-ChhhHHHHHhCCChHHHHHhhcCCCCCccccCCCccchHHHhHHHHHHHHhcCChhhHHHHHhCC
Q 005044 79 AAKRATHVLAELAK-NEEVVNWIVEGGAVPALVKHLQAPPTSEADRNLKPFEHEVEKGSAFALGLLAVKPEHQQLIVDNG 157 (717)
Q Consensus 79 ~~~~a~~~L~~l~~-~~~~~~~~~~~g~i~~L~~lL~~~~~~~~~~~~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~ 157 (717)
++....-.+.+.+. +++.... ++..+.+=+.++++ .+|..|+++|+++-.. +..+ -
T Consensus 84 lKKLvYLYL~~ya~~~pelalL-----aINtl~KDl~d~Np------------~IRaLALRtLs~Ir~~-~i~e-----~ 140 (746)
T PTZ00429 84 LKKLVYLYVLSTARLQPEKALL-----AVNTFLQDTTNSSP------------VVRALAVRTMMCIRVS-SVLE-----Y 140 (746)
T ss_pred HHHHHHHHHHHHcccChHHHHH-----HHHHHHHHcCCCCH------------HHHHHHHHHHHcCCcH-HHHH-----H
Confidence 34444445555555 4443222 24556655555544 9999999999988632 2211 2
Q ss_pred ChHHHHHHHhccccCCCccchhHHHHHHHHHHHHHhhcCchhhhHHHhcCCcHHHHHhhcCCCHHHHHHHHHHHHHhhcc
Q 005044 158 ALSHLVNLLKRHMDSNCSRAVNSVIRRAADAITNLAHENSSIKTRVRMEGGIPPLVELLEFTDTKVQRAAAGALRTLAFK 237 (717)
Q Consensus 158 ~i~~L~~lL~~~~~~~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~L~~~ 237 (717)
.+..+.+.+.+.++ .++..|+.++.++...+++ .+...+.++.|.+++.+.++.|+..|+.+|..+...
T Consensus 141 l~~~lkk~L~D~~p--------YVRKtAalai~Kly~~~pe---lv~~~~~~~~L~~LL~D~dp~Vv~nAl~aL~eI~~~ 209 (746)
T PTZ00429 141 TLEPLRRAVADPDP--------YVRKTAAMGLGKLFHDDMQ---LFYQQDFKKDLVELLNDNNPVVASNAAAIVCEVNDY 209 (746)
T ss_pred HHHHHHHHhcCCCH--------HHHHHHHHHHHHHHhhCcc---cccccchHHHHHHHhcCCCccHHHHHHHHHHHHHHh
Confidence 24556667766555 8999999999999876653 334567888999999999999999999999999864
Q ss_pred ChhhHHHHHhcCCHHHHHHHHcCCCHHHHHHHHHHHHHhhcCChHHHHHHHHcCChHHHHHhhccCChHHHHHHHHHHHH
Q 005044 238 NDENKNQIVECNALPTLILMLRSEDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLSSCCSESQREAALLLGQ 317 (717)
Q Consensus 238 ~~~~~~~~~~~g~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~l~~L~~ll~~~~~~~~~~a~~~L~~ 317 (717)
++... -...+.+..|+..+..-++=.+...+.+|....-.++. . ...++..+...|++.++.|.-.|+.++.+
T Consensus 210 ~~~~l--~l~~~~~~~Ll~~L~e~~EW~Qi~IL~lL~~y~P~~~~---e--~~~il~~l~~~Lq~~N~AVVl~Aik~il~ 282 (746)
T PTZ00429 210 GSEKI--ESSNEWVNRLVYHLPECNEWGQLYILELLAAQRPSDKE---S--AETLLTRVLPRMSHQNPAVVMGAIKVVAN 282 (746)
T ss_pred Cchhh--HHHHHHHHHHHHHhhcCChHHHHHHHHHHHhcCCCCcH---H--HHHHHHHHHHHhcCCCHHHHHHHHHHHHH
Confidence 44322 12233466677777666666677777777554222111 1 12457778888889999999999999999
Q ss_pred HhcCC-hhhHHHHHhcCChHHHHHHhcCCCHHHHHHHHHHHHHhhcCCCCchhhHhcCChHHHHHhhcCCChhHHHHHHH
Q 005044 318 FAATD-SDCKVHIVQRGAVRPLIEMLQSPDVQLREMSAFALGRLAQDMHNQAGIAHNGGLVPLLKLLDSKNGSLQHNAAF 396 (717)
Q Consensus 318 l~~~~-~~~~~~l~~~~~l~~L~~~l~~~~~~v~~~a~~~L~~l~~~~~~~~~l~~~~~l~~L~~ll~~~~~~v~~~a~~ 396 (717)
+.... +....... ..+.+.++.++ ++++.++..++..+..+.... ..+.... +..+.- ..+++..++...+.
T Consensus 283 l~~~~~~~~~~~~~-~rl~~pLv~L~-ss~~eiqyvaLr~I~~i~~~~---P~lf~~~-~~~Ff~-~~~Dp~yIK~~KLe 355 (746)
T PTZ00429 283 LASRCSQELIERCT-VRVNTALLTLS-RRDAETQYIVCKNIHALLVIF---PNLLRTN-LDSFYV-RYSDPPFVKLEKLR 355 (746)
T ss_pred hcCcCCHHHHHHHH-HHHHHHHHHhh-CCCccHHHHHHHHHHHHHHHC---HHHHHHH-HHhhhc-ccCCcHHHHHHHHH
Confidence 86432 22222111 12335566664 567889988888887777633 2232221 222222 23445568999999
Q ss_pred HHHhccCCCcchHHHHHhcCccccccchhHHhhhHHHHHHHHHHHHHHhhhchHHHHHHHHhhcchhHHHHHHHHHHhcc
Q 005044 397 ALYGLADNEDNVADFIRVGGVQKLQDGEFIVQATKDCVAKTLKRLEEKIHGRVLNHLLYLMRVAEKGVQRRVALALAHLC 476 (717)
Q Consensus 397 ~L~~l~~~~~~~~~l~~~~~i~~L~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~L~~ll~~~~~~v~~~a~~aL~~l~ 476 (717)
+|..|+.. .+... ++..|.....+.+.+++..+++++++++
T Consensus 356 IL~~Lane-~Nv~~--------------------------------------IL~EL~eYa~d~D~ef~r~aIrAIg~lA 396 (746)
T PTZ00429 356 LLLKLVTP-SVAPE--------------------------------------ILKELAEYASGVDMVFVVEVVRAIASLA 396 (746)
T ss_pred HHHHHcCc-ccHHH--------------------------------------HHHHHHHHhhcCCHHHHHHHHHHHHHHH
Confidence 99999853 34333 3334556666667777788888888776
Q ss_pred CCCCCceeeecCCCHHHHHHHhcCCCchhhhhhHHHHHHhhhc
Q 005044 477 SPDDQRTIFIDGGGLELLLGLLGSTNPKQQLDGAVALFKLANK 519 (717)
Q Consensus 477 ~~~~~~~~~~~~~~l~~L~~ll~~~~~~v~~~a~~~l~~L~~~ 519 (717)
..-.. .....+..|+.++..+.. +..+++.++.++.+.
T Consensus 397 ~k~~~----~a~~cV~~Ll~ll~~~~~-~v~e~i~vik~Ilrk 434 (746)
T PTZ00429 397 IKVDS----VAPDCANLLLQIVDRRPE-LLPQVVTAAKDIVRK 434 (746)
T ss_pred HhChH----HHHHHHHHHHHHhcCCch-hHHHHHHHHHHHHHH
Confidence 54221 123456777777765433 344566667676653
No 62
>KOG2759 consensus Vacuolar H+-ATPase V1 sector, subunit H [Energy production and conversion]
Probab=98.95 E-value=7.6e-07 Score=87.13 Aligned_cols=298 Identities=14% Similarity=0.209 Sum_probs=203.3
Q ss_pred HHHHHHHHHHhhcChhhHHHHHh-------CCChHHHHHhhcCCCCCccccCCCccchHHHhHHHHHHHHhc-CChhhHH
Q 005044 80 AKRATHVLAELAKNEEVVNWIVE-------GGAVPALVKHLQAPPTSEADRNLKPFEHEVEKGSAFALGLLA-VKPEHQQ 151 (717)
Q Consensus 80 ~~~a~~~L~~l~~~~~~~~~~~~-------~g~i~~L~~lL~~~~~~~~~~~~~~~~~~v~~~a~~~L~~l~-~~~~~~~ 151 (717)
....+..+..+.+....+..+.. .-.-+..+.+|...+. -+...+.++++.++ .+...
T Consensus 83 v~yvL~li~DmLs~d~sr~~lf~~~a~~~k~~~~~~fl~ll~r~d~------------~iv~~~~~Ils~la~~g~~~-- 148 (442)
T KOG2759|consen 83 VQYVLTLIDDMLSEDRSRVDLFHDYAHKLKRTEWLSFLNLLNRQDT------------FIVEMSFRILSKLACFGNCK-- 148 (442)
T ss_pred HHHHHHHHHHHHhhCchHHHHHHHHHHhhhccchHHHHHHHhcCCh------------HHHHHHHHHHHHHHHhcccc--
Confidence 56666666666653333333322 1235677888888777 78888999999998 33221
Q ss_pred HHHhCCCh----HHHHHHHhccccCCCccchhHHHHHHHHHHHHHhhcCchhhhHHHhcCCcHHHHHhhc--CCCHHHHH
Q 005044 152 LIVDNGAL----SHLVNLLKRHMDSNCSRAVNSVIRRAADAITNLAHENSSIKTRVRMEGGIPPLVELLE--FTDTKVQR 225 (717)
Q Consensus 152 ~~~~~~~i----~~L~~lL~~~~~~~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~--~~~~~v~~ 225 (717)
...+.. ..|-..+++..+. .....++++|.-+.. .++.|..++..+++..++..+. ..+-.++.
T Consensus 149 --~~~~e~~~~~~~l~~~l~~~~~~-------~~~~~~~rcLQ~ll~-~~eyR~~~v~adg~~~l~~~l~s~~~~~QlQY 218 (442)
T KOG2759|consen 149 --MELSELDVYKGFLKEQLQSSTNN-------DYIQFAARCLQTLLR-VDEYRYAFVIADGVSLLIRILASTKCGFQLQY 218 (442)
T ss_pred --ccchHHHHHHHHHHHHHhccCCC-------chHHHHHHHHHHHhc-CcchhheeeecCcchhhHHHHhccCcchhHHH
Confidence 111122 3344444443332 677888999999888 6778888999999999998883 25688999
Q ss_pred HHHHHHHHhhccChhhHHHHHhcCCHHHHHHHHcCC-CHHHHHHHHHHHHHhhcCCh------HHHHHHHHcCChHHHHH
Q 005044 226 AAAGALRTLAFKNDENKNQIVECNALPTLILMLRSE-DSAIHYEAVGVIGNLVHSSP------NIKKEVLAAGALQPVIG 298 (717)
Q Consensus 226 ~a~~~L~~L~~~~~~~~~~~~~~g~i~~L~~ll~~~-~~~v~~~a~~~L~~l~~~~~------~~~~~~~~~g~l~~L~~ 298 (717)
..+.+++.|+. ++...+.+...+.++.|..++++. .+.|.+-++.++.|+....+ .....++..++.+.+-.
T Consensus 219 qsifciWlLtF-n~~~ae~~~~~~li~~L~~Ivk~~~KEKV~Rivlai~~Nll~k~~~~~~~k~~~~~mv~~~v~k~l~~ 297 (442)
T KOG2759|consen 219 QSIFCIWLLTF-NPHAAEKLKRFDLIQDLSDIVKESTKEKVTRIVLAIFRNLLDKGPDRETKKDIASQMVLCKVLKTLQS 297 (442)
T ss_pred HHHHHHHHhhc-CHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCchhhHHHHHHHHHHhcCchHHHHH
Confidence 99999999997 777777777789999999999864 66889999999999987663 33345555555555554
Q ss_pred hhcc--CChHHHHHHHH-------HHHHHhcCC-----------------------hhhHHHHHh--cCChHHHHHHhcC
Q 005044 299 LLSS--CCSESQREAAL-------LLGQFAATD-----------------------SDCKVHIVQ--RGAVRPLIEMLQS 344 (717)
Q Consensus 299 ll~~--~~~~~~~~a~~-------~L~~l~~~~-----------------------~~~~~~l~~--~~~l~~L~~~l~~ 344 (717)
+-.. .++++....-. -...+++.+ .++...+-+ ..++..|+.+|+.
T Consensus 298 L~~rkysDEDL~~di~~L~e~L~~svq~LsSFDeY~sEl~sG~L~WSP~Hk~e~FW~eNa~rlnennyellkiL~~lLe~ 377 (442)
T KOG2759|consen 298 LEERKYSDEDLVDDIEFLTEKLKNSVQDLSSFDEYKSELRSGRLEWSPVHKSEKFWRENADRLNENNYELLKILIKLLET 377 (442)
T ss_pred HHhcCCCcHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHhCCcCCCccccccchHHHhHHHHhhccHHHHHHHHHHHhc
Confidence 4433 23443322211 111122111 112222222 2477889999977
Q ss_pred -CCHHHHHHHHHHHHHhhcCC-CCchhhHhcCChHHHHHhhcCCChhHHHHHHHHHHhcc
Q 005044 345 -PDVQLREMSAFALGRLAQDM-HNQAGIAHNGGLVPLLKLLDSKNGSLQHNAAFALYGLA 402 (717)
Q Consensus 345 -~~~~v~~~a~~~L~~l~~~~-~~~~~l~~~~~l~~L~~ll~~~~~~v~~~a~~~L~~l~ 402 (717)
.||.+..-||.=++...++. ..+..+.+.||=+.+++++++.+++|+..|+.++..|.
T Consensus 378 s~Dp~iL~VAc~DIge~Vr~yP~gk~vv~k~ggKe~vM~Llnh~d~~Vry~ALlavQ~lm 437 (442)
T KOG2759|consen 378 SNDPIILCVACHDIGEYVRHYPEGKAVVEKYGGKERVMNLLNHEDPEVRYHALLAVQKLM 437 (442)
T ss_pred CCCCceeehhhhhHHHHHHhCchHhHHHHHhchHHHHHHHhcCCCchHHHHHHHHHHHHH
Confidence 46888888999999999854 45566677799999999999999999999999988764
No 63
>KOG2160 consensus Armadillo/beta-catenin-like repeat-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=98.94 E-value=9e-08 Score=92.38 Aligned_cols=183 Identities=18% Similarity=0.171 Sum_probs=160.1
Q ss_pred chHHHhHHHHHHHHhcCChhhHHHHHhCCChHHHHHHHhccccCCCccchhHHHHHHHHHHHHHhhcCchhhhHHHhcCC
Q 005044 129 EHEVEKGSAFALGLLAVKPEHQQLIVDNGALSHLVNLLKRHMDSNCSRAVNSVIRRAADAITNLAHENSSIKTRVRMEGG 208 (717)
Q Consensus 129 ~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~i~~L~~lL~~~~~~~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~ 208 (717)
+++-++.|+.-|..++.+-++...++..|++..++.++++.+. +++..|+++++..+..+|..+..+.+.|+
T Consensus 96 ~le~ke~ald~Le~lve~iDnAndl~~~ggl~~ll~~l~~~~~--------~lR~~Aa~Vigt~~qNNP~~Qe~v~E~~~ 167 (342)
T KOG2160|consen 96 DLEDKEDALDNLEELVEDIDNANDLISLGGLVPLLGYLENSDA--------ELRELAARVIGTAVQNNPKSQEQVIELGA 167 (342)
T ss_pred CHHHHHHHHHHHHHHHHhhhhHHhHhhccCHHHHHHHhcCCcH--------HHHHHHHHHHHHHHhcCHHHHHHHHHccc
Confidence 4588899999999999888999999999999999999988877 99999999999999999999999999999
Q ss_pred cHHHHHhhcC-CCHHHHHHHHHHHHHhhccChhhHHHHHhcCCHHHHHHHHcC--CCHHHHHHHHHHHHHhhcCChHHHH
Q 005044 209 IPPLVELLEF-TDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRS--EDSAIHYEAVGVIGNLVHSSPNIKK 285 (717)
Q Consensus 209 i~~L~~ll~~-~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~g~i~~L~~ll~~--~~~~v~~~a~~~L~~l~~~~~~~~~ 285 (717)
.+.|+..+.+ ++..++..|+.+++.+..+++.....+...++...|...+.+ .+...+..++..+..+.........
T Consensus 168 L~~Ll~~ls~~~~~~~r~kaL~AissLIRn~~~g~~~fl~~~G~~~L~~vl~~~~~~~~lkrK~~~Ll~~Ll~~~~s~~d 247 (342)
T KOG2160|consen 168 LSKLLKILSSDDPNTVRTKALFAISSLIRNNKPGQDEFLKLNGYQVLRDVLQSNNTSVKLKRKALFLLSLLLQEDKSDED 247 (342)
T ss_pred HHHHHHHHccCCCchHHHHHHHHHHHHHhcCcHHHHHHHhcCCHHHHHHHHHcCCcchHHHHHHHHHHHHHHHhhhhhhh
Confidence 9999999976 456788999999999999999999999999999999999998 5667789999999999887666656
Q ss_pred HHHHcCChHHHHHhhccCChHHHHHHHHHHHHHh
Q 005044 286 EVLAAGALQPVIGLLSSCCSESQREAALLLGQFA 319 (717)
Q Consensus 286 ~~~~~g~l~~L~~ll~~~~~~~~~~a~~~L~~l~ 319 (717)
.+...+....+..+....+.++...+..++..+.
T Consensus 248 ~~~~~~f~~~~~~l~~~l~~~~~e~~l~~~l~~l 281 (342)
T KOG2160|consen 248 IASSLGFQRVLENLISSLDFEVNEAALTALLSLL 281 (342)
T ss_pred HHHHhhhhHHHHHHhhccchhhhHHHHHHHHHHH
Confidence 5556677777788888888888888887776664
No 64
>PTZ00429 beta-adaptin; Provisional
Probab=98.91 E-value=1.7e-06 Score=95.22 Aligned_cols=361 Identities=13% Similarity=0.026 Sum_probs=231.3
Q ss_pred CCChHHHHHhhcCCCCCccccCCCccchHHHhHHH-HHHHHhcCChhhHHHHHhCCChHHHHHHHhccccCCCccchhHH
Q 005044 103 GGAVPALVKHLQAPPTSEADRNLKPFEHEVEKGSA-FALGLLAVKPEHQQLIVDNGALSHLVNLLKRHMDSNCSRAVNSV 181 (717)
Q Consensus 103 ~g~i~~L~~lL~~~~~~~~~~~~~~~~~~v~~~a~-~~L~~l~~~~~~~~~~~~~~~i~~L~~lL~~~~~~~~~~~~~~~ 181 (717)
.|=+.-|-..|++.+. .-+..++ +++..++.+.+.. .+++.+++++...+. ++
T Consensus 31 kge~~ELr~~L~s~~~------------~~kk~alKkvIa~mt~G~DvS------~LF~dVvk~~~S~d~--------el 84 (746)
T PTZ00429 31 RGEGAELQNDLNGTDS------------YRKKAAVKRIIANMTMGRDVS------YLFVDVVKLAPSTDL--------EL 84 (746)
T ss_pred cchHHHHHHHHHCCCH------------HHHHHHHHHHHHHHHCCCCch------HHHHHHHHHhCCCCH--------HH
Confidence 4455666677766544 3344444 4666665444432 345667777766654 88
Q ss_pred HHHHHHHHHHHhhcCchhhhHHHhcCCcHHHHHhhcCCCHHHHHHHHHHHHHhhccChhhHHHHHhcCCHHHHHHHHcCC
Q 005044 182 IRRAADAITNLAHENSSIKTRVRMEGGIPPLVELLEFTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSE 261 (717)
Q Consensus 182 ~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~g~i~~L~~ll~~~ 261 (717)
++.+.-.+.+++..+++.. +. .+..+.+-+.++++.+|..|+++|+.+-. ++.... +++.+.+.+.+.
T Consensus 85 KKLvYLYL~~ya~~~pela--lL---aINtl~KDl~d~Np~IRaLALRtLs~Ir~--~~i~e~-----l~~~lkk~L~D~ 152 (746)
T PTZ00429 85 KKLVYLYVLSTARLQPEKA--LL---AVNTFLQDTTNSSPVVRALAVRTMMCIRV--SSVLEY-----TLEPLRRAVADP 152 (746)
T ss_pred HHHHHHHHHHHcccChHHH--HH---HHHHHHHHcCCCCHHHHHHHHHHHHcCCc--HHHHHH-----HHHHHHHHhcCC
Confidence 8888888888877565532 21 46788888889999999999999998864 333222 456678889999
Q ss_pred CHHHHHHHHHHHHHhhcCChHHHHHHHHcCChHHHHHhhccCChHHHHHHHHHHHHHhcCChhhHHHHHhcCChHHHHHH
Q 005044 262 DSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLSSCCSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEM 341 (717)
Q Consensus 262 ~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~l~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~l~~~~~l~~L~~~ 341 (717)
++.||..|+.++..+...+++ .+...+.++.|.+++.+.++.+..+|+.+|..+...++... -...+.+..|+..
T Consensus 153 ~pYVRKtAalai~Kly~~~pe---lv~~~~~~~~L~~LL~D~dp~Vv~nAl~aL~eI~~~~~~~l--~l~~~~~~~Ll~~ 227 (746)
T PTZ00429 153 DPYVRKTAAMGLGKLFHDDMQ---LFYQQDFKKDLVELLNDNNPVVASNAAAIVCEVNDYGSEKI--ESSNEWVNRLVYH 227 (746)
T ss_pred CHHHHHHHHHHHHHHHhhCcc---cccccchHHHHHHHhcCCCccHHHHHHHHHHHHHHhCchhh--HHHHHHHHHHHHH
Confidence 999999999999999765553 33456788999999999999999999999999975544321 2234456777777
Q ss_pred hcCCCHHHHHHHHHHHHHhhcCCCCchhhHhcCChHHHHHhhcCCChhHHHHHHHHHHhccCCCc--chHHHHHhcCccc
Q 005044 342 LQSPDVQLREMSAFALGRLAQDMHNQAGIAHNGGLVPLLKLLDSKNGSLQHNAAFALYGLADNED--NVADFIRVGGVQK 419 (717)
Q Consensus 342 l~~~~~~v~~~a~~~L~~l~~~~~~~~~l~~~~~l~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~--~~~~l~~~~~i~~ 419 (717)
+..-++-.+...+.+|.... +..... ....+..+...+++.++.|...|+.++.++..... ....... ..-..
T Consensus 228 L~e~~EW~Qi~IL~lL~~y~--P~~~~e--~~~il~~l~~~Lq~~N~AVVl~Aik~il~l~~~~~~~~~~~~~~-rl~~p 302 (746)
T PTZ00429 228 LPECNEWGQLYILELLAAQR--PSDKES--AETLLTRVLPRMSHQNPAVVMGAIKVVANLASRCSQELIERCTV-RVNTA 302 (746)
T ss_pred hhcCChHHHHHHHHHHHhcC--CCCcHH--HHHHHHHHHHHhcCCCHHHHHHHHHHHHHhcCcCCHHHHHHHHH-HHHHH
Confidence 77767777777666664422 221111 12456667788889999999999999999975421 1111110 01122
Q ss_pred cccchhHHhhhHHHHHHHHHHHHHHhhhchHHHHHHH----HhhcchhHHHHHHHHHHhccCCCCCceeeecCCCHHHHH
Q 005044 420 LQDGEFIVQATKDCVAKTLKRLEEKIHGRVLNHLLYL----MRVAEKGVQRRVALALAHLCSPDDQRTIFIDGGGLELLL 495 (717)
Q Consensus 420 L~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~L~~l----l~~~~~~v~~~a~~aL~~l~~~~~~~~~~~~~~~l~~L~ 495 (717)
++.+.......+..+...+..+.... ..++..-++. ..+ ...++...+.+|..++...+... ++.-|.
T Consensus 303 Lv~L~ss~~eiqyvaLr~I~~i~~~~-P~lf~~~~~~Ff~~~~D-p~yIK~~KLeIL~~Lane~Nv~~------IL~EL~ 374 (746)
T PTZ00429 303 LLTLSRRDAETQYIVCKNIHALLVIF-PNLLRTNLDSFYVRYSD-PPFVKLEKLRLLLKLVTPSVAPE------ILKELA 374 (746)
T ss_pred HHHhhCCCccHHHHHHHHHHHHHHHC-HHHHHHHHHhhhcccCC-cHHHHHHHHHHHHHHcCcccHHH------HHHHHH
Confidence 22221111222222222222222111 1222222222 233 33589999999999987755332 346677
Q ss_pred HHhcCCCchhhhhhHHHHHHhhhc
Q 005044 496 GLLGSTNPKQQLDGAVALFKLANK 519 (717)
Q Consensus 496 ~ll~~~~~~v~~~a~~~l~~L~~~ 519 (717)
....+.+.+++..+..++.+++..
T Consensus 375 eYa~d~D~ef~r~aIrAIg~lA~k 398 (746)
T PTZ00429 375 EYASGVDMVFVVEVVRAIASLAIK 398 (746)
T ss_pred HHhhcCCHHHHHHHHHHHHHHHHh
Confidence 777788889999999999999975
No 65
>KOG0946 consensus ER-Golgi vesicle-tethering protein p115 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.90 E-value=2.4e-06 Score=89.70 Aligned_cols=288 Identities=16% Similarity=0.203 Sum_probs=214.1
Q ss_pred hHHHHHhhcCCCCCccccCCCccchHHHhHHHHHHHHhcCChhhHHHHHhCCChHHHHHHHhccccCCCccchhHHHHHH
Q 005044 106 VPALVKHLQAPPTSEADRNLKPFEHEVEKGSAFALGLLAVKPEHQQLIVDNGALSHLVNLLKRHMDSNCSRAVNSVIRRA 185 (717)
Q Consensus 106 i~~L~~lL~~~~~~~~~~~~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~i~~L~~lL~~~~~~~~~~~~~~~~~~a 185 (717)
|+.|+.-+.+..- ++=|+.|++.|-.++ ...|..+.. .+++.++..|.++..++ ++...+
T Consensus 24 I~kLcDRvessTL-----------~eDRR~A~rgLKa~s--rkYR~~Vga-~Gmk~li~vL~~D~~D~------E~ik~~ 83 (970)
T KOG0946|consen 24 IEKLCDRVESSTL-----------LEDRRDAVRGLKAFS--RKYREEVGA-QGMKPLIQVLQRDYMDP------EIIKYA 83 (970)
T ss_pred HHHHHHHHhhccc-----------hhhHHHHHHHHHHHH--HHHHHHHHH-cccHHHHHHHhhccCCH------HHHHHH
Confidence 5566655554433 166788888888877 455555554 45899999998876544 899999
Q ss_pred HHHHHHHhhcCc------hhh----------h-HHHhcCCcHHHHHhhcCCCHHHHHHHHHHHHHhhccChhh-HHHH-H
Q 005044 186 ADAITNLAHENS------SIK----------T-RVRMEGGIPPLVELLEFTDTKVQRAAAGALRTLAFKNDEN-KNQI-V 246 (717)
Q Consensus 186 ~~~L~~l~~~~~------~~~----------~-~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~L~~~~~~~-~~~~-~ 246 (717)
+..+.++...++ ..+ . .+...+.|..++..+...|-.||..+...|.++....+.. +..+ .
T Consensus 84 LdTl~il~~~dd~~~v~dds~qsdd~g~~iae~fik~qd~I~lll~~~e~~DF~VR~~aIqLlsalls~r~~e~q~~ll~ 163 (970)
T KOG0946|consen 84 LDTLLILTSHDDSPEVMDDSTQSDDLGLWIAEQFIKNQDNITLLLQSLEEFDFHVRLYAIQLLSALLSCRPTELQDALLV 163 (970)
T ss_pred HHHHHHHHhcCcchhhcccchhhhHHHHHHHHHHHcCchhHHHHHHHHHhhchhhhhHHHHHHHHHHhcCCHHHHHHHHH
Confidence 999999987542 111 1 2233578899999999999999999999999998755543 3333 3
Q ss_pred hcCCHHHHHHHHcCCCHHHHHHHHHHHHHhhcCChHHHHHHHHcCChHHHHHhhccC----ChHHHHHHHHHHHHHhcCC
Q 005044 247 ECNALPTLILMLRSEDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLSSC----CSESQREAALLLGQFAATD 322 (717)
Q Consensus 247 ~~g~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~l~~L~~ll~~~----~~~~~~~a~~~L~~l~~~~ 322 (717)
..-+|..++.+|.+....+|..++-.|..++.+++..++.+.=..++..|..++... ..-|...|+..|-|+-..+
T Consensus 164 ~P~gIS~lmdlL~DsrE~IRNe~iLlL~eL~k~n~~IQKlVAFENaFerLfsIIeeEGg~dGgIVveDCL~ll~NLLK~N 243 (970)
T KOG0946|consen 164 SPMGISKLMDLLRDSREPIRNEAILLLSELVKDNSSIQKLVAFENAFERLFSIIEEEGGLDGGIVVEDCLILLNNLLKNN 243 (970)
T ss_pred CchhHHHHHHHHhhhhhhhchhHHHHHHHHHccCchHHHHHHHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHhhC
Confidence 457899999999999999999999999999999999888888788999999999763 2467888999999999888
Q ss_pred hhhHHHHHhcCChHHHHHHhcC---CCH--------HH--HHHHHHHHHHhhcCC-------CCchhhHhcCChHHHHHh
Q 005044 323 SDCKVHIVQRGAVRPLIEMLQS---PDV--------QL--REMSAFALGRLAQDM-------HNQAGIAHNGGLVPLLKL 382 (717)
Q Consensus 323 ~~~~~~l~~~~~l~~L~~~l~~---~~~--------~v--~~~a~~~L~~l~~~~-------~~~~~l~~~~~l~~L~~l 382 (717)
..+...+.+.+.+|.|.++|.. .+. .+ ...++.++..+.... .+++.+...+++..|..+
T Consensus 244 ~SNQ~~FrE~~~i~rL~klL~~f~~~d~Ev~~W~~Qrv~Nv~~~Lqivr~lVsP~Nt~~~~~q~qk~l~ss~ll~~Lc~i 323 (970)
T KOG0946|consen 244 ISNQNFFREGSYIPRLLKLLSVFEFGDGEVFGWSTQRVQNVIEALQIVRSLVSPGNTSSITHQNQKALVSSHLLDVLCTI 323 (970)
T ss_pred cchhhHHhccccHHHHHhhcCcccccCcccccccHHHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHcchHHHHHHH
Confidence 8999999999999999988853 221 11 223444555555321 223467788899999988
Q ss_pred hcCC--ChhHHHHHHHHHHhccCCC-cchHHHHH
Q 005044 383 LDSK--NGSLQHNAAFALYGLADNE-DNVADFIR 413 (717)
Q Consensus 383 l~~~--~~~v~~~a~~~L~~l~~~~-~~~~~l~~ 413 (717)
+.+. +.+|+..+.-++.++.++. .+...|.+
T Consensus 324 l~~~~vp~dIltesiitvAevVRgn~~nQ~~F~~ 357 (970)
T KOG0946|consen 324 LMHPGVPADILTESIITVAEVVRGNARNQDEFAD 357 (970)
T ss_pred HcCCCCcHhHHHHHHHHHHHHHHhchHHHHHHhh
Confidence 8765 5678888888999988754 33344444
No 66
>KOG0946 consensus ER-Golgi vesicle-tethering protein p115 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.90 E-value=1e-06 Score=92.32 Aligned_cols=333 Identities=16% Similarity=0.188 Sum_probs=238.7
Q ss_pred HHHHHHHHhhhhhccccchHHHHHHHHHHHHHHHHhhcChhhHHHHHhCCChHHHHHhhcCCCCCccccCCCccchHHHh
Q 005044 55 LLSEVSAQVNVLNTTFSWLEADRAAAKRATHVLAELAKNEEVVNWIVEGGAVPALVKHLQAPPTSEADRNLKPFEHEVEK 134 (717)
Q Consensus 55 ~~~~i~~l~~~L~~~~~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~g~i~~L~~lL~~~~~~~~~~~~~~~~~~v~~ 134 (717)
....|+.+++.+.+..-.. | |+.|++.|..+++ .+|..++ ..|++.|++.|+.+.. |+++..
T Consensus 20 ~aETI~kLcDRvessTL~e--D---RR~A~rgLKa~sr--kYR~~Vg-a~Gmk~li~vL~~D~~----------D~E~ik 81 (970)
T KOG0946|consen 20 AAETIEKLCDRVESSTLLE--D---RRDAVRGLKAFSR--KYREEVG-AQGMKPLIQVLQRDYM----------DPEIIK 81 (970)
T ss_pred HHhHHHHHHHHHhhccchh--h---HHHHHHHHHHHHH--HHHHHHH-HcccHHHHHHHhhccC----------CHHHHH
Confidence 4556788888876652222 2 7889999988865 5555544 4569999999998766 459999
Q ss_pred HHHHHHHHhcCCh---h--------------hHHH-HHhCCChHHHHHHHhccccCCCccchhHHHHHHHHHHHHHhhcC
Q 005044 135 GSAFALGLLAVKP---E--------------HQQL-IVDNGALSHLVNLLKRHMDSNCSRAVNSVIRRAADAITNLAHEN 196 (717)
Q Consensus 135 ~a~~~L~~l~~~~---~--------------~~~~-~~~~~~i~~L~~lL~~~~~~~~~~~~~~~~~~a~~~L~~l~~~~ 196 (717)
.++.++.++..+. + ..+. +...+.|..++..+...+- .++..++..+.++....
T Consensus 82 ~~LdTl~il~~~dd~~~v~dds~qsdd~g~~iae~fik~qd~I~lll~~~e~~DF--------~VR~~aIqLlsalls~r 153 (970)
T KOG0946|consen 82 YALDTLLILTSHDDSPEVMDDSTQSDDLGLWIAEQFIKNQDNITLLLQSLEEFDF--------HVRLYAIQLLSALLSCR 153 (970)
T ss_pred HHHHHHHHHHhcCcchhhcccchhhhHHHHHHHHHHHcCchhHHHHHHHHHhhch--------hhhhHHHHHHHHHHhcC
Confidence 9999999998221 1 1122 2245778888888887765 89999999999988644
Q ss_pred -chhhhHHH-hcCCcHHHHHhhcCCCHHHHHHHHHHHHHhhccChhhHHHHHhcCCHHHHHHHHcCC---C-HHHHHHHH
Q 005044 197 -SSIKTRVR-MEGGIPPLVELLEFTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSE---D-SAIHYEAV 270 (717)
Q Consensus 197 -~~~~~~~~-~~~~i~~L~~ll~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~g~i~~L~~ll~~~---~-~~v~~~a~ 270 (717)
.+.+..+. ..-+|..++.+|.+....+|-.++..|..|+.+++..++.++-.+++..|+.++..+ + .-|...|+
T Consensus 154 ~~e~q~~ll~~P~gIS~lmdlL~DsrE~IRNe~iLlL~eL~k~n~~IQKlVAFENaFerLfsIIeeEGg~dGgIVveDCL 233 (970)
T KOG0946|consen 154 PTELQDALLVSPMGISKLMDLLRDSREPIRNEAILLLSELVKDNSSIQKLVAFENAFERLFSIIEEEGGLDGGIVVEDCL 233 (970)
T ss_pred CHHHHHHHHHCchhHHHHHHHHhhhhhhhchhHHHHHHHHHccCchHHHHHHHHHHHHHHHHHHHhcCCCCCcchHHHHH
Confidence 34555444 346899999999999999999999999999998888888888888999999999753 2 36788999
Q ss_pred HHHHHhhcCChHHHHHHHHcCChHHHHHhhccC---C-----hHHH-----HHHHHHHHHHhcCC------hhhHHHHHh
Q 005044 271 GVIGNLVHSSPNIKKEVLAAGALQPVIGLLSSC---C-----SESQ-----REAALLLGQFAATD------SDCKVHIVQ 331 (717)
Q Consensus 271 ~~L~~l~~~~~~~~~~~~~~g~l~~L~~ll~~~---~-----~~~~-----~~a~~~L~~l~~~~------~~~~~~l~~ 331 (717)
..|-||...+..++..+.+.+.++.|.++|.-. + |..+ ..++.++..+.+.+ ..+...+..
T Consensus 234 ~ll~NLLK~N~SNQ~~FrE~~~i~rL~klL~~f~~~d~Ev~~W~~Qrv~Nv~~~Lqivr~lVsP~Nt~~~~~q~qk~l~s 313 (970)
T KOG0946|consen 234 ILLNNLLKNNISNQNFFREGSYIPRLLKLLSVFEFGDGEVFGWSTQRVQNVIEALQIVRSLVSPGNTSSITHQNQKALVS 313 (970)
T ss_pred HHHHHHHhhCcchhhHHhccccHHHHHhhcCcccccCcccccccHHHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHH
Confidence 999999999888888999999999999887531 1 2222 23444555554321 233456778
Q ss_pred cCChHHHHHHhcCC--CHHHHHHHHHHHHHhhcCC-CCchhhHhcCC------hHH----HHHhhc-CCChhHHHHHHHH
Q 005044 332 RGAVRPLIEMLQSP--DVQLREMSAFALGRLAQDM-HNQAGIAHNGG------LVP----LLKLLD-SKNGSLQHNAAFA 397 (717)
Q Consensus 332 ~~~l~~L~~~l~~~--~~~v~~~a~~~L~~l~~~~-~~~~~l~~~~~------l~~----L~~ll~-~~~~~v~~~a~~~ 397 (717)
.+++..|+.++-++ ..+++..+..++++..++. .++..+.+..+ .+. ++.+.. ......|.++.++
T Consensus 314 s~ll~~Lc~il~~~~vp~dIltesiitvAevVRgn~~nQ~~F~~v~~p~~~~Pr~sivvllmsm~ne~q~~~lRcAv~yc 393 (970)
T KOG0946|consen 314 SHLLDVLCTILMHPGVPADILTESIITVAEVVRGNARNQDEFADVTAPSIPNPRPSIVVLLMSMFNEKQPFSLRCAVLYC 393 (970)
T ss_pred cchHHHHHHHHcCCCCcHhHHHHHHHHHHHHHHhchHHHHHHhhccCCCCCCCccchhHHHHHHHhccCCchHHHHHHHH
Confidence 89999999998765 5678889999999998854 34555544321 112 223333 3456778888887
Q ss_pred HHhc-cCCCcchHHHHH
Q 005044 398 LYGL-ADNEDNVADFIR 413 (717)
Q Consensus 398 L~~l-~~~~~~~~~l~~ 413 (717)
+..+ ..+.+....++.
T Consensus 394 f~s~l~dN~~gq~~~l~ 410 (970)
T KOG0946|consen 394 FRSYLYDNDDGQRKFLK 410 (970)
T ss_pred HHHHHhcchhhHHHHHH
Confidence 7765 566666666665
No 67
>PF03224 V-ATPase_H_N: V-ATPase subunit H; InterPro: IPR004908 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. This entry represents subunit H (also known as Vma13p) found in the V1 complex of V-ATPases. This subunit has a regulatory function, being responsible for activating ATPase activity and coupling ATPase activity to proton flow []. The yeast enzyme contains five motifs similar to the HEAT or Armadillo repeats seen in the importins, and can be divided into two distinct domains: a large N-terminal domain consisting of stacked alpha helices, and a smaller C-terminal alpha-helical domain with a similar superhelical topology to an armadillo repeat []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0046961 proton-transporting ATPase activity, rotational mechanism, 0015991 ATP hydrolysis coupled proton transport, 0000221 vacuolar proton-transporting V-type ATPase, V1 domain; PDB: 1HO8_A.
Probab=98.86 E-value=1.3e-07 Score=95.27 Aligned_cols=227 Identities=22% Similarity=0.265 Sum_probs=159.6
Q ss_pred ChHHHHHHHhcc-ccCCCccchhHHHHHHHHHHHHHhhcCchhhhHHHhc------CCcHHHHHhhcCCCHHHHHHHHHH
Q 005044 158 ALSHLVNLLKRH-MDSNCSRAVNSVIRRAADAITNLAHENSSIKTRVRME------GGIPPLVELLEFTDTKVQRAAAGA 230 (717)
Q Consensus 158 ~i~~L~~lL~~~-~~~~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~------~~i~~L~~ll~~~~~~v~~~a~~~ 230 (717)
....++.+|+.. .+. ++....+..+..++..++.....+... .....+++++.++|.-++..++..
T Consensus 56 ~~~~~l~lL~~~~~~~-------d~v~yvL~li~dll~~~~~~~~~~~~~~~~~~~~~~~~fl~ll~~~D~~i~~~a~~i 128 (312)
T PF03224_consen 56 YASLFLNLLNKLSSND-------DTVQYVLTLIDDLLSDDPSRVELFLELAKQDDSDPYSPFLKLLDRNDSFIQLKAAFI 128 (312)
T ss_dssp ------HHHHHH---H-------HHHHHHHHHHHHHHH-SSSSHHHHHHHHH-TTH--HHHHHHH-S-SSHHHHHHHHHH
T ss_pred HHHHHHHHHHHccCcH-------HHHHHHHHHHHHHHhcCHHHHHHHHHhcccccchhHHHHHHHhcCCCHHHHHHHHHH
Confidence 355667777766 332 899999999999999888766665551 246788888888999999999999
Q ss_pred HHHhhccChhhHHHHHhcCCHHHHHHHHcC----CCHHHHHHHHHHHHHhhcCChHHHHHHHHcCChHHHHHhh------
Q 005044 231 LRTLAFKNDENKNQIVECNALPTLILMLRS----EDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLL------ 300 (717)
Q Consensus 231 L~~L~~~~~~~~~~~~~~g~i~~L~~ll~~----~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~l~~L~~ll------ 300 (717)
|..+....+....... .+.++.++..+.+ ++.+++..++.+|.++.. .+..+..+.+.++++.+..++
T Consensus 129 Lt~Ll~~~~~~~~~~~-~~~l~~ll~~L~~~l~~~~~~~~~~av~~L~~LL~-~~~~R~~f~~~~~v~~l~~iL~~~~~~ 206 (312)
T PF03224_consen 129 LTSLLSQGPKRSEKLV-KEALPKLLQWLSSQLSSSDSELQYIAVQCLQNLLR-SKEYRQVFWKSNGVSPLFDILRKQATN 206 (312)
T ss_dssp HHHHHTSTTT--HHHH-HHHHHHHHHHHH-TT-HHHH---HHHHHHHHHHHT-SHHHHHHHHTHHHHHHHHHHHH-----
T ss_pred HHHHHHcCCccccchH-HHHHHHHHHHHHHhhcCCCcchHHHHHHHHHHHhC-cchhHHHHHhcCcHHHHHHHHHhhccc
Confidence 9999875544433322 3456777777764 455677999999999974 578889999999999999999
Q ss_pred cc-CChHHHHHHHHHHHHHhcCChhhHHHHHhcCChHHHHHHhcC-CCHHHHHHHHHHHHHhhcCCC--CchhhHhcCCh
Q 005044 301 SS-CCSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQS-PDVQLREMSAFALGRLAQDMH--NQAGIAHNGGL 376 (717)
Q Consensus 301 ~~-~~~~~~~~a~~~L~~l~~~~~~~~~~l~~~~~l~~L~~~l~~-~~~~v~~~a~~~L~~l~~~~~--~~~~l~~~~~l 376 (717)
.+ ....+..+++.+++-++ .+++....+.+.++++.|+.+++. ...++.+-++.++.||..... ....++..+++
T Consensus 207 ~~~~~~Ql~Y~~ll~lWlLS-F~~~~~~~~~~~~~i~~L~~i~~~~~KEKvvRv~la~l~Nl~~~~~~~~~~~mv~~~~l 285 (312)
T PF03224_consen 207 SNSSGIQLQYQALLCLWLLS-FEPEIAEELNKKYLIPLLADILKDSIKEKVVRVSLAILRNLLSKAPKSNIELMVLCGLL 285 (312)
T ss_dssp ----HHHHHHHHHHHHHHHT-TSHHHHHHHHTTSHHHHHHHHHHH--SHHHHHHHHHHHHHTTSSSSTTHHHHHHHH-HH
T ss_pred CCCCchhHHHHHHHHHHHHh-cCHHHHHHHhccchHHHHHHHHHhcccchHHHHHHHHHHHHHhccHHHHHHHHHHccHH
Confidence 22 23578899999999995 677888888888899999999976 577899999999999998665 55667777766
Q ss_pred HHHHHhhcC--CChhHHHHH
Q 005044 377 VPLLKLLDS--KNGSLQHNA 394 (717)
Q Consensus 377 ~~L~~ll~~--~~~~v~~~a 394 (717)
+.+-.+... +|+++....
T Consensus 286 ~~l~~L~~rk~~Dedl~edl 305 (312)
T PF03224_consen 286 KTLQNLSERKWSDEDLTEDL 305 (312)
T ss_dssp HHHHHHHSS--SSHHHHHHH
T ss_pred HHHHHHhcCCCCCHHHHHHH
Confidence 555554432 466665543
No 68
>KOG3678 consensus SARM protein (with sterile alpha and armadillo motifs) [Extracellular structures]
Probab=98.79 E-value=5.5e-07 Score=88.56 Aligned_cols=276 Identities=21% Similarity=0.241 Sum_probs=198.8
Q ss_pred HHHHHhCCChHHHHHhhcCCCCCccccCCCccchHHHhHHHHHHHHhcCChhhHHHHHhCCChHHHHHHHhccccCCCcc
Q 005044 97 VNWIVEGGAVPALVKHLQAPPTSEADRNLKPFEHEVEKGSAFALGLLAVKPEHQQLIVDNGALSHLVNLLKRHMDSNCSR 176 (717)
Q Consensus 97 ~~~~~~~g~i~~L~~lL~~~~~~~~~~~~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~i~~L~~lL~~~~~~~~~~ 176 (717)
++.+...|++..|+.++..++... .||.+|.+.|-.+. ..++++.++..| +..++.+-+.....
T Consensus 173 CD~iR~~~~lD~Llrmf~aPn~et----------~vRve~~rlLEq~~-~aeN~d~va~~~-~~~Il~lAK~~e~~---- 236 (832)
T KOG3678|consen 173 CDAIRLDGGLDLLLRMFQAPNLET----------SVRVEAARLLEQIL-VAENRDRVARIG-LGVILNLAKEREPV---- 236 (832)
T ss_pred hhHhhccchHHHHHHHHhCCchhH----------HHHHHHHHHHHHHH-hhhhhhHHhhcc-chhhhhhhhhcCcH----
Confidence 456777899999999999877622 67999999998876 335677777766 77777777655443
Q ss_pred chhHHHHHHHHHHHHHhhcCchhhhHHHhcCCcHHHHHhhcCCCHHHHHHHHHHHHHhhcc-ChhhHHHHHhcCCHHHHH
Q 005044 177 AVNSVIRRAADAITNLAHENSSIKTRVRMEGGIPPLVELLEFTDTKVQRAAAGALRTLAFK-NDENKNQIVECNALPTLI 255 (717)
Q Consensus 177 ~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~L~~~-~~~~~~~~~~~g~i~~L~ 255 (717)
+..+..+.+|.++..++++....++..|++..++..++..+|.+.+.++.+|.|++.+ ..+.++.+++..+.+-|.
T Consensus 237 ---e~aR~~~~il~~mFKHSeet~~~Lvaa~~lD~vl~~~rRt~P~lLRH~ALAL~N~~L~~~~a~qrrmveKr~~EWLF 313 (832)
T KOG3678|consen 237 ---ELARSVAGILEHMFKHSEETCQRLVAAGGLDAVLYWCRRTDPALLRHCALALGNCALHGGQAVQRRMVEKRAAEWLF 313 (832)
T ss_pred ---HHHHHHHHHHHHHhhhhHHHHHHHHhhcccchheeecccCCHHHHHHHHHHhhhhhhhchhHHHHHHHHhhhhhhhh
Confidence 8899999999999999999999999999999999999999999999999999999863 345677788888888888
Q ss_pred HHHcCCCHHHHHHHHHHHHHhhcCChHHHHHHHHcCChHHHHHhhccCChHHHHHHHHHHHHHhcCChhhHHHHHhcCCh
Q 005044 256 LMLRSEDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLSSCCSESQREAALLLGQFAATDSDCKVHIVQRGAV 335 (717)
Q Consensus 256 ~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~l~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~l~~~~~l 335 (717)
.+..+.|+-.+..||-++..++.. .+....+...|.+...--++.+.++.. ++.+..+..+ =....-+
T Consensus 314 ~LA~skDel~R~~AClAV~vlat~-KE~E~~VrkS~TlaLVEPlva~~DP~~----------FARD~hd~aQ-G~~~d~L 381 (832)
T KOG3678|consen 314 PLAFSKDELLRLHACLAVAVLATN-KEVEREVRKSGTLALVEPLVASLDPGR----------FARDAHDYAQ-GRGPDDL 381 (832)
T ss_pred hhhcchHHHHHHHHHHHHhhhhhh-hhhhHHHhhccchhhhhhhhhccCcch----------hhhhhhhhhc-cCChHHH
Confidence 888888888899999999999754 555566666776655555555444321 1111111100 0012346
Q ss_pred HHHHHHhcCCCHHHHHHHHHHHHHhh--cCCCCc-hhhHhcCChHHHHHhhcCCChhHHHHHHHHHHhccC
Q 005044 336 RPLIEMLQSPDVQLREMSAFALGRLA--QDMHNQ-AGIAHNGGLVPLLKLLDSKNGSLQHNAAFALYGLAD 403 (717)
Q Consensus 336 ~~L~~~l~~~~~~v~~~a~~~L~~l~--~~~~~~-~~l~~~~~l~~L~~ll~~~~~~v~~~a~~~L~~l~~ 403 (717)
+.|+.+|++...+.+..++.-++.=+ ....++ +.+.+.|+++.|.++..+.+..-...|-.+|.-+..
T Consensus 382 qRLvPlLdS~R~EAq~i~AF~l~~EAaIKs~Q~K~kVFseIGAIQaLKevaSS~d~vaakfAseALtviGE 452 (832)
T KOG3678|consen 382 QRLVPLLDSNRLEAQCIGAFYLCAEAAIKSLQGKTKVFSEIGAIQALKEVASSPDEVAAKFASEALTVIGE 452 (832)
T ss_pred HHhhhhhhcchhhhhhhHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHhcc
Confidence 77888888665555544443333222 122333 446677999999999998887777777788877764
No 69
>PF03224 V-ATPase_H_N: V-ATPase subunit H; InterPro: IPR004908 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. This entry represents subunit H (also known as Vma13p) found in the V1 complex of V-ATPases. This subunit has a regulatory function, being responsible for activating ATPase activity and coupling ATPase activity to proton flow []. The yeast enzyme contains five motifs similar to the HEAT or Armadillo repeats seen in the importins, and can be divided into two distinct domains: a large N-terminal domain consisting of stacked alpha helices, and a smaller C-terminal alpha-helical domain with a similar superhelical topology to an armadillo repeat []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0046961 proton-transporting ATPase activity, rotational mechanism, 0015991 ATP hydrolysis coupled proton transport, 0000221 vacuolar proton-transporting V-type ATPase, V1 domain; PDB: 1HO8_A.
Probab=98.77 E-value=1.9e-07 Score=93.99 Aligned_cols=215 Identities=17% Similarity=0.266 Sum_probs=154.0
Q ss_pred HHHHHHHHHHHHHHhhc-ChhhHHHHHh------CCChHHHHHhhcCCCCCccccCCCccchHHHhHHHHHHHHhc-CCh
Q 005044 76 DRAAAKRATHVLAELAK-NEEVVNWIVE------GGAVPALVKHLQAPPTSEADRNLKPFEHEVEKGSAFALGLLA-VKP 147 (717)
Q Consensus 76 ~~~~~~~a~~~L~~l~~-~~~~~~~~~~------~g~i~~L~~lL~~~~~~~~~~~~~~~~~~v~~~a~~~L~~l~-~~~ 147 (717)
+.++....+..+.++.. ++.....+.. ......++.++..++. -++..|+..|+.+. ..+
T Consensus 70 ~~d~v~yvL~li~dll~~~~~~~~~~~~~~~~~~~~~~~~fl~ll~~~D~------------~i~~~a~~iLt~Ll~~~~ 137 (312)
T PF03224_consen 70 NDDTVQYVLTLIDDLLSDDPSRVELFLELAKQDDSDPYSPFLKLLDRNDS------------FIQLKAAFILTSLLSQGP 137 (312)
T ss_dssp -HHHHHHHHHHHHHHHH-SSSSHHHHHHHHH-TTH--HHHHHHH-S-SSH------------HHHHHHHHHHHHHHTSTT
T ss_pred cHHHHHHHHHHHHHHHhcCHHHHHHHHHhcccccchhHHHHHHHhcCCCH------------HHHHHHHHHHHHHHHcCC
Confidence 34468888999999888 5655555554 1256788888887766 99999999999999 333
Q ss_pred hhHHHHHhCCChHHHHHHHhccccCCCccchhHHHHHHHHHHHHHhhcCchhhhHHHhcCCcHHHHHhh-----cC--CC
Q 005044 148 EHQQLIVDNGALSHLVNLLKRHMDSNCSRAVNSVIRRAADAITNLAHENSSIKTRVRMEGGIPPLVELL-----EF--TD 220 (717)
Q Consensus 148 ~~~~~~~~~~~i~~L~~lL~~~~~~~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll-----~~--~~ 220 (717)
..... ...+.++.+++.+++..... ..+++..++.+|.++.. .+..|..+.+.++++.+..++ .+ .+
T Consensus 138 ~~~~~-~~~~~l~~ll~~L~~~l~~~----~~~~~~~av~~L~~LL~-~~~~R~~f~~~~~v~~l~~iL~~~~~~~~~~~ 211 (312)
T PF03224_consen 138 KRSEK-LVKEALPKLLQWLSSQLSSS----DSELQYIAVQCLQNLLR-SKEYRQVFWKSNGVSPLFDILRKQATNSNSSG 211 (312)
T ss_dssp T--HH-HHHHHHHHHHHHHH-TT-HH----HH---HHHHHHHHHHHT-SHHHHHHHHTHHHHHHHHHHHH---------H
T ss_pred ccccc-hHHHHHHHHHHHHHHhhcCC----CcchHHHHHHHHHHHhC-cchhHHHHHhcCcHHHHHHHHHhhcccCCCCc
Confidence 32222 12455778888877632211 11677899999999997 888999999999999999999 22 34
Q ss_pred HHHHHHHHHHHHHhhccChhhHHHHHhcCCHHHHHHHHcC-CCHHHHHHHHHHHHHhhcCChH-HHHHHHHcCChHHHHH
Q 005044 221 TKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRS-EDSAIHYEAVGVIGNLVHSSPN-IKKEVLAAGALQPVIG 298 (717)
Q Consensus 221 ~~v~~~a~~~L~~L~~~~~~~~~~~~~~g~i~~L~~ll~~-~~~~v~~~a~~~L~~l~~~~~~-~~~~~~~~g~l~~L~~ 298 (717)
..++..++.+++.|+. +++....+.+.++++.|+++++. ..+.|.+-++.++.|+...... +...++..|+++.+-.
T Consensus 212 ~Ql~Y~~ll~lWlLSF-~~~~~~~~~~~~~i~~L~~i~~~~~KEKvvRv~la~l~Nl~~~~~~~~~~~mv~~~~l~~l~~ 290 (312)
T PF03224_consen 212 IQLQYQALLCLWLLSF-EPEIAEELNKKYLIPLLADILKDSIKEKVVRVSLAILRNLLSKAPKSNIELMVLCGLLKTLQN 290 (312)
T ss_dssp HHHHHHHHHHHHHHTT-SHHHHHHHHTTSHHHHHHHHHHH--SHHHHHHHHHHHHHTTSSSSTTHHHHHHHH-HHHHHHH
T ss_pred hhHHHHHHHHHHHHhc-CHHHHHHHhccchHHHHHHHHHhcccchHHHHHHHHHHHHHhccHHHHHHHHHHccHHHHHHH
Confidence 7889999999999997 78888889999999999999985 4779999999999999876553 6677777777777766
Q ss_pred hhcc--CChHHHH
Q 005044 299 LLSS--CCSESQR 309 (717)
Q Consensus 299 ll~~--~~~~~~~ 309 (717)
+... .++++..
T Consensus 291 L~~rk~~Dedl~e 303 (312)
T PF03224_consen 291 LSERKWSDEDLTE 303 (312)
T ss_dssp HHSS--SSHHHHH
T ss_pred HhcCCCCCHHHHH
Confidence 6654 2444443
No 70
>KOG0211 consensus Protein phosphatase 2A regulatory subunit A and related proteins [Signal transduction mechanisms]
Probab=98.76 E-value=1.1e-06 Score=95.53 Aligned_cols=388 Identities=19% Similarity=0.150 Sum_probs=248.9
Q ss_pred HHHHHHHHhhhhhccccchHHHHHHHHHHHHHHHHhhcChhhHHHHHhCCChHHHHHhhcCCCCCccccCCCccchHHHh
Q 005044 55 LLSEVSAQVNVLNTTFSWLEADRAAAKRATHVLAELAKNEEVVNWIVEGGAVPALVKHLQAPPTSEADRNLKPFEHEVEK 134 (717)
Q Consensus 55 ~~~~i~~l~~~L~~~~~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~g~i~~L~~lL~~~~~~~~~~~~~~~~~~v~~ 134 (717)
+......+.+-|... ..+.++..++.-+.+++..-.. ....++.++.+..+..++.. .||.
T Consensus 234 vk~elr~~~~~lc~d-----~~~~Vr~~~a~~l~~~a~~~~~--~~~~s~v~~~~~~L~~Ddqd------------sVr~ 294 (759)
T KOG0211|consen 234 VKRELRPIVQSLCQD-----DTPMVRRAVASNLGNIAKVLES--EIVKSEVLPTLIQLLRDDQD------------SVRE 294 (759)
T ss_pred HHHHHHHHHHhhccc-----cchhhHHHHHhhhHHHHHHHHH--HHHHhhccHHHhhhhhcchh------------hHHH
Confidence 444444444444333 2344677777778777773222 56678889999999988776 8999
Q ss_pred HHHHHHHHhc---CCh-hhHHHHHhCCChHHHHHHHhccccCCCccchhHHHHHHHHHHHHHhh----------------
Q 005044 135 GSAFALGLLA---VKP-EHQQLIVDNGALSHLVNLLKRHMDSNCSRAVNSVIRRAADAITNLAH---------------- 194 (717)
Q Consensus 135 ~a~~~L~~l~---~~~-~~~~~~~~~~~i~~L~~lL~~~~~~~~~~~~~~~~~~a~~~L~~l~~---------------- 194 (717)
.|...+.++. +.+ +.. ....+.++....+... .++.........++.
T Consensus 295 ~a~~~~~~l~~l~~~~~d~~-----~~~~~~l~~~~~d~~~--------~v~~~~~~~~~~L~~~~~~~~~~~~~~~~~~ 361 (759)
T KOG0211|consen 295 AAVESLVSLLDLLDDDDDVV-----KSLTESLVQAVEDGSW--------RVSYMVADKFSELSSAVGPSATRTQLVPPVS 361 (759)
T ss_pred HHHHHHHHHHHhcCCchhhh-----hhhhHHHHHHhcChhH--------HHHHHHhhhhhhHHHHhccccCcccchhhHH
Confidence 9999988888 333 211 1223444444433221 222222221111111
Q ss_pred ----c--------------------CchhhhHHHhcCCcHHHHHhhcCCCHHHHHHHHHHHHHhhccChhhHHHHHhcCC
Q 005044 195 ----E--------------------NSSIKTRVRMEGGIPPLVELLEFTDTKVQRAAAGALRTLAFKNDENKNQIVECNA 250 (717)
Q Consensus 195 ----~--------------------~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~g~ 250 (717)
. +......+.....+|.+-.+..+.+..++...+.....+..-.+ +... -...
T Consensus 362 ~l~~~~~~e~r~a~a~~~~~l~~~l~~~~~~~i~~~~ilp~~~~lv~d~~~~vr~a~a~~~~~~~p~~~--k~~t-i~~l 438 (759)
T KOG0211|consen 362 NLLKDEEWEVRYAIAKKVQKLACYLNASCYPNIPDSSILPEVQVLVLDNALHVRSALASVITGLSPILP--KERT-ISEL 438 (759)
T ss_pred HHhcchhhhhhHHhhcchHHHhhhcCcccccccchhhhhHHHHHHHhcccchHHHHHhccccccCccCC--cCcC-cccc
Confidence 0 10111122222334555555555556666655555554432111 1111 1235
Q ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHhhcCChHHHHHHHHcCChHHHHHhhccCChHHHHHHHHHHHHHhcCChhhHHHHH
Q 005044 251 LPTLILMLRSEDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLSSCCSESQREAALLLGQFAATDSDCKVHIV 330 (717)
Q Consensus 251 i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~l~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~l~ 330 (717)
.|.++..+++..+.|+.+..+.+..+-..++...........++.+..+-.+..++++.+..+.+..++... ...+.
T Consensus 439 lp~~~~~l~de~~~V~lnli~~ls~~~~v~~v~g~~~~s~slLp~i~el~~d~~wRvr~ail~~ip~la~q~---~~~~~ 515 (759)
T KOG0211|consen 439 LPLLIGNLKDEDPIVRLNLIDKLSLLEEVNDVIGISTVSNSLLPAIVELAEDLLWRVRLAILEYIPQLALQL---GVEFF 515 (759)
T ss_pred ChhhhhhcchhhHHHHHhhHHHHHHHHhccCcccchhhhhhhhhhhhhhccchhHHHHHHHHHHHHHHHHhh---hhHHh
Confidence 677788888999999999998887775555555566677778888888888888999999999888887422 23455
Q ss_pred hcCChHHHHHHhcCCCHHHHHHHHHHHHHhhcCCCCchhhHhcCChHHHHHhhcCCChhHHHHHHHHHHhccCCCcchHH
Q 005044 331 QRGAVRPLIEMLQSPDVQLREMSAFALGRLAQDMHNQAGIAHNGGLVPLLKLLDSKNGSLQHNAAFALYGLADNEDNVAD 410 (717)
Q Consensus 331 ~~~~l~~L~~~l~~~~~~v~~~a~~~L~~l~~~~~~~~~l~~~~~l~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~ 410 (717)
+...-+.+..++.+....++..|+..+..++.... ..+.....++.++.+..+++..+|...+.++..++..-..
T Consensus 516 ~~~~~~l~~~~l~d~v~~Ir~~aa~~l~~l~~~~G--~~w~~~~~i~k~L~~~~q~~y~~R~t~l~si~~la~v~g~--- 590 (759)
T KOG0211|consen 516 DEKLAELLRTWLPDHVYSIREAAARNLPALVETFG--SEWARLEEIPKLLAMDLQDNYLVRMTTLFSIHELAEVLGQ--- 590 (759)
T ss_pred hHHHHHHHHhhhhhhHHHHHHHHHHHhHHHHHHhC--cchhHHHhhHHHHHHhcCcccchhhHHHHHHHHHHHHhcc---
Confidence 55567778888888888999999999999886433 4455556677777777777788888888877755431111
Q ss_pred HHHhcCccccccchhHHhhhHHHHHHHHHHHHHHhhhchHHHHHHHHhhcchhHHHHHHHHHHhccCCCCCceeeecCCC
Q 005044 411 FIRVGGVQKLQDGEFIVQATKDCVAKTLKRLEEKIHGRVLNHLLYLMRVAEKGVQRRVALALAHLCSPDDQRTIFIDGGG 490 (717)
Q Consensus 411 l~~~~~i~~L~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~~~~~~ 490 (717)
......+++.+..+..++.++||.+++..|..+...-... ..+...
T Consensus 591 --------------------------------ei~~~~Llp~~~~l~~D~vanVR~nvak~L~~i~~~L~~~--~~~~~v 636 (759)
T KOG0211|consen 591 --------------------------------EITCEDLLPVFLDLVKDPVANVRINVAKHLPKILKLLDES--VRDEEV 636 (759)
T ss_pred --------------------------------HHHHHHHhHHHHHhccCCchhhhhhHHHHHHHHHhhcchH--HHHHHH
Confidence 1234457888999999999999999999999886554422 234556
Q ss_pred HHHHHHHhcCCCchhhhhhHHHHHHhhhc
Q 005044 491 LELLLGLLGSTNPKQQLDGAVALFKLANK 519 (717)
Q Consensus 491 l~~L~~ll~~~~~~v~~~a~~~l~~L~~~ 519 (717)
.|.+..+.++.+.++|..|..+...+...
T Consensus 637 ~pll~~L~~d~~~dvr~~a~~a~~~i~l~ 665 (759)
T KOG0211|consen 637 LPLLETLSSDQELDVRYRAILAFGSIELS 665 (759)
T ss_pred HHHHHHhccCcccchhHHHHHHHHHHHHH
Confidence 78888888999999999988877766543
No 71
>KOG4413 consensus 26S proteasome regulatory complex, subunit PSMD5 [Posttranslational modification, protein turnover, chaperones]
Probab=98.76 E-value=2.1e-06 Score=80.80 Aligned_cols=306 Identities=14% Similarity=0.138 Sum_probs=209.6
Q ss_pred HHHHHHHHHHHhhcCchhhhHHHhcCCcHHHHHhhcCCCHHHHHHHHHHHHHhhccChhh----HHHHHhcCCHHHHHHH
Q 005044 182 IRRAADAITNLAHENSSIKTRVRMEGGIPPLVELLEFTDTKVQRAAAGALRTLAFKNDEN----KNQIVECNALPTLILM 257 (717)
Q Consensus 182 ~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~L~~~~~~~----~~~~~~~g~i~~L~~l 257 (717)
...+..+|-.|........ ...+..|.|-.-|..++..++..+|..+..+..+.+.+ ...+++.|+++.++..
T Consensus 60 ttlcVscLERLfkakegah---lapnlmpdLQrGLiaddasVKiLackqigcilEdcDtnaVseillvvNaeilklildc 136 (524)
T KOG4413|consen 60 TTLCVSCLERLFKAKEGAH---LAPNLMPDLQRGLIADDASVKILACKQIGCILEDCDTNAVSEILLVVNAEILKLILDC 136 (524)
T ss_pred hhhHHHHHHHHHhhccchh---hchhhhHHHHhcccCCcchhhhhhHhhhhHHHhcCchhhHHHHHHHhhhhHHHHHHHH
Confidence 3346666666665333221 12345566666777889999999999999988766633 2335688999999999
Q ss_pred HcCCCHHHHHHHHHHHHHhhcCChHHHHHHHHcCChHHH--HHhhccCChHHHHHHHHHHHHHhcCChhhHHHHHhcCCh
Q 005044 258 LRSEDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPV--IGLLSSCCSESQREAALLLGQFAATDSDCKVHIVQRGAV 335 (717)
Q Consensus 258 l~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~l~~L--~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~l~~~~~l 335 (717)
+-.++.+|...|...|..++.. +.....+.....++.+ ..+-...+.-+|......+-.+.+-.+.........|.+
T Consensus 137 IggeddeVAkAAiesikrialf-paaleaiFeSellDdlhlrnlaakcndiaRvRVleLIieifSiSpesaneckkSGLl 215 (524)
T KOG4413|consen 137 IGGEDDEVAKAAIESIKRIALF-PAALEAIFESELLDDLHLRNLAAKCNDIARVRVLELIIEIFSISPESANECKKSGLL 215 (524)
T ss_pred HcCCcHHHHHHHHHHHHHHHhc-HHHHHHhcccccCChHHHhHHHhhhhhHHHHHHHHHHHHHHhcCHHHHhHhhhhhHH
Confidence 9999999999999999999765 3444566666655543 344445566677788888888888788887788889999
Q ss_pred HHHHHHhcC-CCHHHHHHHHHHHHHhhcCCCCchhhHhcCChHHHHHhhcC--CChhHHHHHHHHHHhccCCCcchHHHH
Q 005044 336 RPLIEMLQS-PDVQLREMSAFALGRLAQDMHNQAGIAHNGGLVPLLKLLDS--KNGSLQHNAAFALYGLADNEDNVADFI 412 (717)
Q Consensus 336 ~~L~~~l~~-~~~~v~~~a~~~L~~l~~~~~~~~~l~~~~~l~~L~~ll~~--~~~~v~~~a~~~L~~l~~~~~~~~~l~ 412 (717)
..|..-|+. .|.-++..++.....|+...+.+..+.+.|.++.+..++.. .++--...+......+..+. +...+.
T Consensus 216 dlLeaElkGteDtLVianciElvteLaeteHgreflaQeglIdlicnIIsGadsdPfekfralmgfgkffgke-aimdvs 294 (524)
T KOG4413|consen 216 DLLEAELKGTEDTLVIANCIELVTELAETEHGREFLAQEGLIDLICNIISGADSDPFEKFRALMGFGKFFGKE-AIMDVS 294 (524)
T ss_pred HHHHHHhcCCcceeehhhHHHHHHHHHHHhhhhhhcchhhHHHHHHHHhhCCCCCcHHHHHHHHHHHHHhcch-HHhhcC
Confidence 999888877 67778889999999999988888889999999988888853 23322333444444333211 100000
Q ss_pred HhcCccccccchhHHhhhHHHHHHHHHHHHHHhhhchHHHHHHHHhhcchhHHHHHHHHHHhccCCCCCceeeecCCCHH
Q 005044 413 RVGGVQKLQDGEFIVQATKDCVAKTLKRLEEKIHGRVLNHLLYLMRVAEKGVQRRVALALAHLCSPDDQRTIFIDGGGLE 492 (717)
Q Consensus 413 ~~~~i~~L~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~~~~~~l~ 492 (717)
+.. ++..+- -.+..-..++.+.+|+.+..|+-+++.+.++.+..+.+...| -|
T Consensus 295 eea---------------------iceali-----iaidgsfEmiEmnDpdaieaAiDalGilGSnteGadlllkTg-pp 347 (524)
T KOG4413|consen 295 EEA---------------------ICEALI-----IAIDGSFEMIEMNDPDAIEAAIDALGILGSNTEGADLLLKTG-PP 347 (524)
T ss_pred HHH---------------------HHHHHH-----HHHHhhHHhhhcCCchHHHHHHHHHHhccCCcchhHHHhccC-Ch
Confidence 000 011110 034445677888899999999999999988887776655544 33
Q ss_pred HH----HHHhcCCCchhhhhhHHHHHHhhhc
Q 005044 493 LL----LGLLGSTNPKQQLDGAVALFKLANK 519 (717)
Q Consensus 493 ~L----~~ll~~~~~~v~~~a~~~l~~L~~~ 519 (717)
.. .+....+...-+..+..+|.+++..
T Consensus 348 aaehllarafdqnahakqeaaihaLaaIage 378 (524)
T KOG4413|consen 348 AAEHLLARAFDQNAHAKQEAAIHALAAIAGE 378 (524)
T ss_pred HHHHHHHHHhcccccchHHHHHHHHHHhhcc
Confidence 33 3344434445577888999999875
No 72
>COG5215 KAP95 Karyopherin (importin) beta [Intracellular trafficking and secretion]
Probab=98.75 E-value=9.5e-06 Score=82.17 Aligned_cols=401 Identities=14% Similarity=0.083 Sum_probs=241.7
Q ss_pred HHHHHHHHhhhhhccccchHHHHHHHHHHHHHHHHhhc--ChhhHHHHHh--CCC--------hHHHHHhhcCCCCCccc
Q 005044 55 LLSEVSAQVNVLNTTFSWLEADRAAAKRATHVLAELAK--NEEVVNWIVE--GGA--------VPALVKHLQAPPTSEAD 122 (717)
Q Consensus 55 ~~~~i~~l~~~L~~~~~~~~~~~~~~~~a~~~L~~l~~--~~~~~~~~~~--~g~--------i~~L~~lL~~~~~~~~~ 122 (717)
+...+..+++.|... ++....|-.|--+|.|-.. ++.......+ .|. -...++.|.+..+
T Consensus 37 F~qf~~ll~qvl~d~----ns~~~~Rm~agl~LKN~l~a~d~~~~~~~~qrW~~~~~E~k~qvK~~al~aL~s~ep---- 108 (858)
T COG5215 37 FEQFISLLVQVLCDL----NSNDQLRMVAGLILKNSLHANDPELQKGCSQRWLGMRHESKEQVKGMALRALKSPEP---- 108 (858)
T ss_pred HHHHHHHHHHHHhcc----CCcHHHHHHHHHHHhhhhhcCCHHHHHHHHHhhccCCHHHHHHHHHHHHHHhcCCcc----
Confidence 444555555555543 2233456666666666433 3333222222 111 1123445555544
Q ss_pred cCCCccchHHHhHHHHHHHHhcCChhhHHHHHhCCChHHHHHHHhccccCCCccchhHHHHHHHHHHHHHhhcCchhhhH
Q 005044 123 RNLKPFEHEVEKGSAFALGLLAVKPEHQQLIVDNGALSHLVNLLKRHMDSNCSRAVNSVIRRAADAITNLAHENSSIKTR 202 (717)
Q Consensus 123 ~~~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~i~~L~~lL~~~~~~~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~ 202 (717)
.+-..|+.+++.++.-+ +..+..|-+...+.+...+..+. ...+.++.++++.|....+ ...
T Consensus 109 --------r~~~~Aaql~aaIA~~E------lp~~~wp~lm~~mv~nvg~eqp~---~~k~~sl~~~gy~ces~~P-e~l 170 (858)
T COG5215 109 --------RFCTMAAQLLAAIARME------LPNSLWPGLMEEMVRNVGDEQPV---SGKCESLGICGYHCESEAP-EDL 170 (858)
T ss_pred --------HHHHHHHHHHHHHHHhh------CccccchHHHHHHHHhccccCch---HhHHHHHHHHHHHhhccCH-HHH
Confidence 77778888888887111 12345565665554433322222 7889999999999984443 333
Q ss_pred HHhcCC-cHHHHHhh-c-CCCHHHHHHHHHHHHHhhccChhhHHHHHhc----CCHHHHHHHHcCCCHHHHHHHHHHHHH
Q 005044 203 VRMEGG-IPPLVELL-E-FTDTKVQRAAAGALRTLAFKNDENKNQIVEC----NALPTLILMLRSEDSAIHYEAVGVIGN 275 (717)
Q Consensus 203 ~~~~~~-i~~L~~ll-~-~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~----g~i~~L~~ll~~~~~~v~~~a~~~L~~ 275 (717)
+...+. +..++... + .++..+|..++.+|.+-+. ..+..+... -+++..++.-+.++.+++..+..++..
T Consensus 171 i~~sN~il~aiv~ga~k~et~~avRLaaL~aL~dsl~---fv~~nf~~E~erNy~mqvvceatq~~d~e~q~aafgCl~k 247 (858)
T COG5215 171 IQMSNVILFAIVMGALKNETTSAVRLAALKALMDSLM---FVQGNFCYEEERNYFMQVVCEATQGNDEELQHAAFGCLNK 247 (858)
T ss_pred HHHhhHHHHHHHHhhcccCchHHHHHHHHHHHHHHHH---HHHHhhcchhhhchhheeeehhccCCcHHHHHHHHHHHHH
Confidence 333333 33444433 2 3567899999999998332 111222221 234556667778899999999999999
Q ss_pred hhcCChHHHHHHHHcCChHHHHHhhccCChHHHHHHHHHHHHHhcCChhhHHHHH----------------hcCChHHHH
Q 005044 276 LVHSSPNIKKEVLAAGALQPVIGLLSSCCSESQREAALLLGQFAATDSDCKVHIV----------------QRGAVRPLI 339 (717)
Q Consensus 276 l~~~~~~~~~~~~~~g~l~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~l~----------------~~~~l~~L~ 339 (717)
+..-+-...+...+..+.......+.+.+.++...+....+.+|....+...... -.+++|.|+
T Consensus 248 im~LyY~fm~~ymE~aL~alt~~~mks~nd~va~qavEfWsticeEeid~~~e~~~~pe~p~qn~~fa~aav~dvlP~lL 327 (858)
T COG5215 248 IMMLYYKFMQSYMENALAALTGRFMKSQNDEVAIQAVEFWSTICEEEIDGEMEDKYLPEVPAQNHGFARAAVADVLPELL 327 (858)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCcchHHHHHHHHHHHHHHHHHhhhHHHHhhcccCchhhcchHHHHHHHHHHHHH
Confidence 9765555556666666677777888999999999999888777743222211111 134789999
Q ss_pred HHhcC-------CCHHHHHHHHHHHHHhhcCCCCchhhHhcCChHHHHHhhcCCChhHHHHHHHHHHhccCCCcchHHHH
Q 005044 340 EMLQS-------PDVQLREMSAFALGRLAQDMHNQAGIAHNGGLVPLLKLLDSKNGSLQHNAAFALYGLADNEDNVADFI 412 (717)
Q Consensus 340 ~~l~~-------~~~~v~~~a~~~L~~l~~~~~~~~~l~~~~~l~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~l~ 412 (717)
++|.. ++..+...|..+|.-.+....+ .+++. .+..+-+-+.+.++.-++.+..+++.+...+..
T Consensus 328 ~LL~~q~ed~~~DdWn~smaA~sCLqlfaq~~gd--~i~~p-Vl~FvEqni~~~~w~nreaavmAfGSvm~gp~~----- 399 (858)
T COG5215 328 SLLEKQGEDYYGDDWNPSMAASSCLQLFAQLKGD--KIMRP-VLGFVEQNIRSESWANREAAVMAFGSVMHGPCE----- 399 (858)
T ss_pred HHHHhcCCCccccccchhhhHHHHHHHHHHHhhh--HhHHH-HHHHHHHhccCchhhhHHHHHHHhhhhhcCccH-----
Confidence 99954 2345666777777766653322 12222 344445667888999999999999988765422
Q ss_pred HhcCccccccchhHHhhhHHHHHHHHHHHHHHhhhchHHHHHHHHhhcchhHHHHHHHHHHhccCCCCCceeeecCCCHH
Q 005044 413 RVGGVQKLQDGEFIVQATKDCVAKTLKRLEEKIHGRVLNHLLYLMRVAEKGVQRRVALALAHLCSPDDQRTIFIDGGGLE 492 (717)
Q Consensus 413 ~~~~i~~L~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~~~~~~l~ 492 (717)
.|+.. +-.+.+|.+.+++.++.--++..++|+++.++..-.- .+-..|-++
T Consensus 400 -------------------~~lT~--------~V~qalp~i~n~m~D~~l~vk~ttAwc~g~iad~va~--~i~p~~Hl~ 450 (858)
T COG5215 400 -------------------DCLTK--------IVPQALPGIENEMSDSCLWVKSTTAWCFGAIADHVAM--IISPCGHLV 450 (858)
T ss_pred -------------------HHHHh--------hHHhhhHHHHHhcccceeehhhHHHHHHHHHHHHHHH--hcCcccccc
Confidence 11111 1123678888999988888999999999999765220 011122222
Q ss_pred HHH-HHhc--CCCchhhhhhHHHHHHhhhccc
Q 005044 493 LLL-GLLG--STNPKQQLDGAVALFKLANKAT 521 (717)
Q Consensus 493 ~L~-~ll~--~~~~~v~~~a~~~l~~L~~~~~ 521 (717)
..+ ..+. .++|.+...++|...|+..+..
T Consensus 451 ~~vsa~liGl~D~p~~~~ncsw~~~nlv~h~a 482 (858)
T COG5215 451 LEVSASLIGLMDCPFRSINCSWRKENLVDHIA 482 (858)
T ss_pred HHHHHHHhhhhccchHHhhhHHHHHhHHHhhh
Confidence 222 2222 2567778899999999998754
No 73
>COG5215 KAP95 Karyopherin (importin) beta [Intracellular trafficking and secretion]
Probab=98.75 E-value=7.2e-06 Score=83.00 Aligned_cols=416 Identities=17% Similarity=0.106 Sum_probs=240.8
Q ss_pred cchHHHHHHHHHHHHHHHHhhc-------ChhhHHHHHhCCChHHHHHhhcCCCCCccccCCCccchHHHhHHHHHHHHh
Q 005044 71 SWLEADRAAAKRATHVLAELAK-------NEEVVNWIVEGGAVPALVKHLQAPPTSEADRNLKPFEHEVEKGSAFALGLL 143 (717)
Q Consensus 71 ~~~~~~~~~~~~a~~~L~~l~~-------~~~~~~~~~~~g~i~~L~~lL~~~~~~~~~~~~~~~~~~v~~~a~~~L~~l 143 (717)
.+.+++..+|+.|+.+|.+-+. .+..|..+ +...++.-+.++. +++..+..+|.++
T Consensus 186 ~k~et~~avRLaaL~aL~dsl~fv~~nf~~E~erNy~-----mqvvceatq~~d~------------e~q~aafgCl~ki 248 (858)
T COG5215 186 LKNETTSAVRLAALKALMDSLMFVQGNFCYEEERNYF-----MQVVCEATQGNDE------------ELQHAAFGCLNKI 248 (858)
T ss_pred cccCchHHHHHHHHHHHHHHHHHHHHhhcchhhhchh-----heeeehhccCCcH------------HHHHHHHHHHHHH
Confidence 3444566788888888887322 12222222 2333344444444 9999999999998
Q ss_pred c-CChhhHHHHHhCCChHHHHHHHhccccCCCccchhHHHHHHHHHHHHHhhcCchhhhH----------------HHhc
Q 005044 144 A-VKPEHQQLIVDNGALSHLVNLLKRHMDSNCSRAVNSVIRRAADAITNLAHENSSIKTR----------------VRME 206 (717)
Q Consensus 144 ~-~~~~~~~~~~~~~~i~~L~~lL~~~~~~~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~----------------~~~~ 206 (717)
. -....-....+.-........+++.++ ++...++.....+|...-+.... -...
T Consensus 249 m~LyY~fm~~ymE~aL~alt~~~mks~nd--------~va~qavEfWsticeEeid~~~e~~~~pe~p~qn~~fa~aav~ 320 (858)
T COG5215 249 MMLYYKFMQSYMENALAALTGRFMKSQND--------EVAIQAVEFWSTICEEEIDGEMEDKYLPEVPAQNHGFARAAVA 320 (858)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCcch--------HHHHHHHHHHHHHHHHHhhhHHHHhhcccCchhhcchHHHHHH
Confidence 8 444444444444444455566666665 78888887777777532211111 0123
Q ss_pred CCcHHHHHhhcC-------CCHHHHHHHHHHHHHhhccChhhHHHHHhcCCHHHHHHHHcCCCHHHHHHHHHHHHHhhcC
Q 005044 207 GGIPPLVELLEF-------TDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSEDSAIHYEAVGVIGNLVHS 279 (717)
Q Consensus 207 ~~i~~L~~ll~~-------~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~ 279 (717)
+++|.|+.+|.. +++.+...|..||--.+... ...+.+. ++..+-+-+++++-.-+..++.+++.+..+
T Consensus 321 dvlP~lL~LL~~q~ed~~~DdWn~smaA~sCLqlfaq~~---gd~i~~p-Vl~FvEqni~~~~w~nreaavmAfGSvm~g 396 (858)
T COG5215 321 DVLPELLSLLEKQGEDYYGDDWNPSMAASSCLQLFAQLK---GDKIMRP-VLGFVEQNIRSESWANREAAVMAFGSVMHG 396 (858)
T ss_pred HHHHHHHHHHHhcCCCccccccchhhhHHHHHHHHHHHh---hhHhHHH-HHHHHHHhccCchhhhHHHHHHHhhhhhcC
Confidence 478899998854 34667777777776665311 1122222 333333455677777899999999999877
Q ss_pred ChHHHHHHHHcCChHHHHHhhccCChHHHHHHHHHHHHHhcCChhhHHHHHhcCChHHHHHHh-c--CCCHHHHHHHHHH
Q 005044 280 SPNIKKEVLAAGALQPVIGLLSSCCSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEML-Q--SPDVQLREMSAFA 356 (717)
Q Consensus 280 ~~~~~~~~~~~g~l~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~l~~~~~l~~L~~~l-~--~~~~~v~~~a~~~ 356 (717)
.......-+-...+|.+...+.++.--++..++|+++.++.+- ...+-..+-++..++.+ . .+.|.+..+++|.
T Consensus 397 p~~~~lT~~V~qalp~i~n~m~D~~l~vk~ttAwc~g~iad~v---a~~i~p~~Hl~~~vsa~liGl~D~p~~~~ncsw~ 473 (858)
T COG5215 397 PCEDCLTKIVPQALPGIENEMSDSCLWVKSTTAWCFGAIADHV---AMIISPCGHLVLEVSASLIGLMDCPFRSINCSWR 473 (858)
T ss_pred ccHHHHHhhHHhhhHHHHHhcccceeehhhHHHHHHHHHHHHH---HHhcCccccccHHHHHHHhhhhccchHHhhhHHH
Confidence 5544444445678899999999888788999999999997432 22233344444433332 1 1467788899999
Q ss_pred HHHhhcCCCCch---hhHhcCChHHHHHhh------cCCChhHHHHHHHHHHhccCCC-cchHHHHHhcCccc----ccc
Q 005044 357 LGRLAQDMHNQA---GIAHNGGLVPLLKLL------DSKNGSLQHNAAFALYGLADNE-DNVADFIRVGGVQK----LQD 422 (717)
Q Consensus 357 L~~l~~~~~~~~---~l~~~~~l~~L~~ll------~~~~~~v~~~a~~~L~~l~~~~-~~~~~l~~~~~i~~----L~~ 422 (717)
.-||+.+-.... .-.-....+.++.-| ...+...|..+..+|..|.... +....+. .|.... |-.
T Consensus 474 ~~nlv~h~a~a~~~~~S~l~~fY~ai~~~Lv~~t~~~~Ne~n~R~s~fsaLgtli~~~~d~V~~~~-a~~~~~~~~kl~~ 552 (858)
T COG5215 474 KENLVDHIAKAVREVESFLAKFYLAILNALVKGTELALNESNLRVSLFSALGTLILICPDAVSDIL-AGFYDYTSKKLDE 552 (858)
T ss_pred HHhHHHhhhhhhccccchhHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHhhcchhHHHHH-HHHHHHHHHHHHH
Confidence 999886432111 111112233333322 2345566677777777765422 2211111 111111 000
Q ss_pred ---c----hh--HHhhhHHHHHHHHHHHHHH----------hhhchHHHHHHHHhhcchh-HHHHHHHHHHhccCCCCCc
Q 005044 423 ---G----EF--IVQATKDCVAKTLKRLEEK----------IHGRVLNHLLYLMRVAEKG-VQRRVALALAHLCSPDDQR 482 (717)
Q Consensus 423 ---~----~~--~~~~~~~~~~~~~~~l~~~----------~~~~~~~~L~~ll~~~~~~-v~~~a~~aL~~l~~~~~~~ 482 (717)
. .. +-....+...+.+.-+... ++..++.-++.+|.+.++. +-.....++++++.+-+.+
T Consensus 553 ~isv~~q~l~~eD~~~~~elqSN~~~vl~aiir~~~~~ie~v~D~lm~Lf~r~les~~~t~~~~dV~~aIsal~~sl~e~ 632 (858)
T COG5215 553 CISVLGQILATEDQLLVEELQSNYIGVLEAIIRTRRRDIEDVEDQLMELFIRILESTKPTTAFGDVYTAISALSTSLEER 632 (858)
T ss_pred HHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhcCCCcccHHHHHHHHHHHHHhccCCchhhhHHHHHHHHHHHHHHHH
Confidence 0 00 0000111111222222222 2445778888888887554 4455777888887765544
Q ss_pred eeeecCCCHHHHHHHhcCCCchhhhhhHHHHHHhhhc
Q 005044 483 TIFIDGGGLELLLGLLGSTNPKQQLDGAVALFKLANK 519 (717)
Q Consensus 483 ~~~~~~~~l~~L~~ll~~~~~~v~~~a~~~l~~L~~~ 519 (717)
....-...+|.|.+-+...+..+-..|...+..|+..
T Consensus 633 Fe~y~~~fiPyl~~aln~~d~~v~~~avglvgdlant 669 (858)
T COG5215 633 FEQYASKFIPYLTRALNCTDRFVLNSAVGLVGDLANT 669 (858)
T ss_pred HHHHHhhhhHHHHHHhcchhHHHHHHHHHHHHHHHHH
Confidence 4445567899999999888888888888888888875
No 74
>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]
Probab=98.72 E-value=4.6e-07 Score=97.56 Aligned_cols=243 Identities=18% Similarity=0.139 Sum_probs=192.9
Q ss_pred HHHHHhhhhhccccchHHHHHHHHHHHHHHHHhhc-ChhhHHHHHhCCChHHHHHhhcCCCCCccccCCCccchHHHhHH
Q 005044 58 EVSAQVNVLNTTFSWLEADRAAAKRATHVLAELAK-NEEVVNWIVEGGAVPALVKHLQAPPTSEADRNLKPFEHEVEKGS 136 (717)
Q Consensus 58 ~i~~l~~~L~~~~~~~~~~~~~~~~a~~~L~~l~~-~~~~~~~~~~~g~i~~L~~lL~~~~~~~~~~~~~~~~~~v~~~a 136 (717)
-+|-.+++|.+. ..+..|+..|..... ++........-|+.|..++||+++.. ++|.--
T Consensus 473 QLPiVLQVLLSQ--------vHRlRAL~LL~RFLDlGpWAV~LaLsVGIFPYVLKLLQS~a~------------ELrpiL 532 (1387)
T KOG1517|consen 473 QLPIVLQVLLSQ--------VHRLRALVLLARFLDLGPWAVDLALSVGIFPYVLKLLQSSAR------------ELRPIL 532 (1387)
T ss_pred hcchHHHHHHHH--------HHHHHHHHHHHHHhccchhhhhhhhccchHHHHHHHhccchH------------hhhhhH
Confidence 356667777643 348999999999888 88888888889999999999999887 888777
Q ss_pred HHHHHHhc-CChhhHHHHHhCCChHHHHHHHhccccCCCccchhHHHHHHHHHHHHHhhcCchhhhHHHhcCCcHHHHHh
Q 005044 137 AFALGLLA-VKPEHQQLIVDNGALSHLVNLLKRHMDSNCSRAVNSVIRRAADAITNLAHENSSIKTRVRMEGGIPPLVEL 215 (717)
Q Consensus 137 ~~~L~~l~-~~~~~~~~~~~~~~i~~L~~lL~~~~~~~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~l 215 (717)
+-+-+++. -++.++..+++.++-...+..|..+..-+ .+-+..|+.+|..++.+....+....+.+.+...+..
T Consensus 533 VFIWAKILAvD~SCQ~dLvKe~g~~YF~~vL~~~~~~~-----~EqrtmaAFVLAviv~nf~lGQ~acl~~~li~iCle~ 607 (1387)
T KOG1517|consen 533 VFIWAKILAVDPSCQADLVKENGYKYFLQVLDPSQAIP-----PEQRTMAAFVLAVIVRNFKLGQKACLNGNLIGICLEH 607 (1387)
T ss_pred HHHHHHHHhcCchhHHHHHhccCceeEEEEecCcCCCC-----HHHHHHHHHHHHHHHcccchhHHHhccccHHHHHHHH
Confidence 77777776 67899999999988888888887732211 1778889999999999888778888888888888888
Q ss_pred hcCC-CHHHHHHHHHHHHHhhccChhhHHHHHhcCCHHHHHHHHcCCCHHHHHHHHHHHHHhhcCC----hHHHHHH---
Q 005044 216 LEFT-DTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSEDSAIHYEAVGVIGNLVHSS----PNIKKEV--- 287 (717)
Q Consensus 216 l~~~-~~~v~~~a~~~L~~L~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~----~~~~~~~--- 287 (717)
+.++ .+-++..++-+|..|-.+.+..+-.=++.++.+.|..+|.++-++||..|+.+|+.+..+. ++....+
T Consensus 608 lnd~~~pLLrQW~~icLG~LW~d~~~Arw~G~r~~AhekL~~~LsD~vpEVRaAAVFALgtfl~~~~d~fde~~~~~~~~ 687 (1387)
T KOG1517|consen 608 LNDDPEPLLRQWLCICLGRLWEDYDEARWSGRRDNAHEKLILLLSDPVPEVRAAAVFALGTFLSNGSDNFDEQTLVVEEE 687 (1387)
T ss_pred hcCCccHHHHHHHHHHHHHHhhhcchhhhccccccHHHHHHHHhcCccHHHHHHHHHHHHHHhcccccccchhhhhhhhh
Confidence 8885 6889999999999999988888877788899999999999999999999999999997642 2211111
Q ss_pred --------HHcCCh----HHHHHhhccCChHHHHHHHHHHHHHhcCChhh
Q 005044 288 --------LAAGAL----QPVIGLLSSCCSESQREAALLLGQFAATDSDC 325 (717)
Q Consensus 288 --------~~~g~l----~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~ 325 (717)
..+..+ -.++.++++.++-++.+.+.+|..+..+....
T Consensus 688 ~~l~~~~~~~E~~i~~~~~~ll~~vsdgsplvr~ev~v~ls~~~~g~~~~ 737 (1387)
T KOG1517|consen 688 IDLDDERTSIEDLIIKGLMSLLALVSDGSPLVRTEVVVALSHFVVGYVSH 737 (1387)
T ss_pred hcchhhhhhHHHHHHhhHHHHHHHHhccchHHHHHHHHHHHHHHHhhHHH
Confidence 111222 26677778888889999888888887654444
No 75
>KOG1824 consensus TATA-binding protein-interacting protein [General function prediction only]
Probab=98.71 E-value=3.6e-06 Score=90.05 Aligned_cols=406 Identities=20% Similarity=0.182 Sum_probs=211.9
Q ss_pred hHHHHHHHHHHHHHHHHhhcC--hhhHHHHHhCCChHHHHHhhcCCCCCccccCCCccchHHHhHHHHHHHHhcCCh-hh
Q 005044 73 LEADRAAAKRATHVLAELAKN--EEVVNWIVEGGAVPALVKHLQAPPTSEADRNLKPFEHEVEKGSAFALGLLAVKP-EH 149 (717)
Q Consensus 73 ~~~~~~~~~~a~~~L~~l~~~--~~~~~~~~~~g~i~~L~~lL~~~~~~~~~~~~~~~~~~v~~~a~~~L~~l~~~~-~~ 149 (717)
.+.|..+++.|+.+++.+..+ +.-+..+ ...++.|++-|+.+ -.|..|++++..++.++ ..
T Consensus 580 ~d~DqeVkeraIscmgq~i~~fgD~l~~eL--~~~L~il~eRl~nE--------------iTRl~AvkAlt~Ia~S~l~i 643 (1233)
T KOG1824|consen 580 TDSDQEVKERAISCMGQIIANFGDFLGNEL--PRTLPILLERLGNE--------------ITRLTAVKALTLIAMSPLDI 643 (1233)
T ss_pred ccccHHHHHHHHHHHHHHHHHHhhhhhhhh--HHHHHHHHHHHhch--------------hHHHHHHHHHHHHHhcccee
Confidence 356777899998888776552 1111111 12456666666554 56888999999999444 22
Q ss_pred HHHHHhCCChHHHHHHHhccccCCCccchhHHHHHHHHHHHHHhhcCchhhhHHHhcCCcHHHHHhhcCCCHHHHHHHHH
Q 005044 150 QQLIVDNGALSHLVNLLKRHMDSNCSRAVNSVIRRAADAITNLAHENSSIKTRVRMEGGIPPLVELLEFTDTKVQRAAAG 229 (717)
Q Consensus 150 ~~~~~~~~~i~~L~~lL~~~~~~~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~ 229 (717)
-..-.-..+++.+..+++.... .++..++.++-.|.......-..-.-...+..+..++..++..+-..|..
T Consensus 644 ~l~~~l~~il~~l~~flrK~~r--------~lr~~~l~a~~~L~~~~~~~~~~~~~e~vL~el~~Lisesdlhvt~~a~~ 715 (1233)
T KOG1824|consen 644 DLSPVLTEILPELASFLRKNQR--------ALRLATLTALDKLVKNYSDSIPAELLEAVLVELPPLISESDLHVTQLAVA 715 (1233)
T ss_pred ehhhhHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHhccccHHHHHHHHHHhhhhhhHHHHHHHHHHHH
Confidence 2122223567888888888765 66666666666666532211111111123344455566677778888888
Q ss_pred HHHHhhccChhhHHHHHhcCCHHHHHHHHcCCCH--HHHHHHHHHHHHhhcCC-hH--HH--------------------
Q 005044 230 ALRTLAFKNDENKNQIVECNALPTLILMLRSEDS--AIHYEAVGVIGNLVHSS-PN--IK-------------------- 284 (717)
Q Consensus 230 ~L~~L~~~~~~~~~~~~~~g~i~~L~~ll~~~~~--~v~~~a~~~L~~l~~~~-~~--~~-------------------- 284 (717)
+|..+....+... .-+...+++.++.+++++-- .....+......+.... ++ ..
T Consensus 716 ~L~tl~~~~ps~l-~~~~~~iL~~ii~ll~Spllqg~al~~~l~~f~alV~t~~~~l~y~~l~s~lt~PV~~~~~~~l~k 794 (1233)
T KOG1824|consen 716 FLTTLAIIQPSSL-LKISNPILDEIIRLLRSPLLQGGALSALLLFFQALVITKEPDLDYISLLSLLTAPVYEQVTDGLHK 794 (1233)
T ss_pred HHHHHHhcccHHH-HHHhhhhHHHHHHHhhCccccchHHHHHHHHHHHHHhcCCCCccHHHHHHHHcCCcccccccchhH
Confidence 8888876443332 33334466777777765411 00111111111111000 00 00
Q ss_pred ----------HHHHH------cCChHHHHHhhcc--CChHHHHHHHHHHHHHhcCChhhHHHHHhcCChHHHHHHhcCCC
Q 005044 285 ----------KEVLA------AGALQPVIGLLSS--CCSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQSPD 346 (717)
Q Consensus 285 ----------~~~~~------~g~l~~L~~ll~~--~~~~~~~~a~~~L~~l~~~~~~~~~~l~~~~~l~~L~~~l~~~~ 346 (717)
..+.. ......+.+=+.+ .+..++.-|...++.+..+.+. .-..++-..+++.+++++
T Consensus 795 qa~~siA~cvA~Lt~~~~~~s~s~a~kl~~~~~s~~s~~~ikvfa~LslGElgr~~~~----s~~~e~~~~iieaf~sp~ 870 (1233)
T KOG1824|consen 795 QAYYSIAKCVAALTCACPQKSKSLATKLIQDLQSPKSSDSIKVFALLSLGELGRRKDL----SPQNELKDTIIEAFNSPS 870 (1233)
T ss_pred HHHHHHHHHHHHHHHhccccchhHHHHHHHHHhCCCCchhHHHHHHhhhhhhccCCCC----CcchhhHHHHHHHcCCCh
Confidence 00000 0011122222221 1234555555566665322211 112334456777788888
Q ss_pred HHHHHHHHHHHHHhhcCCCCchhhHhcCChHHHHHhhcCCChhHHHHHHH----HHHhccCC--CcchHHHHHhcCcccc
Q 005044 347 VQLREMSAFALGRLAQDMHNQAGIAHNGGLVPLLKLLDSKNGSLQHNAAF----ALYGLADN--EDNVADFIRVGGVQKL 420 (717)
Q Consensus 347 ~~v~~~a~~~L~~l~~~~~~~~~l~~~~~l~~L~~ll~~~~~~v~~~a~~----~L~~l~~~--~~~~~~l~~~~~i~~L 420 (717)
.+++.+|..||++++.+.-+ ..+|.+++.+.++.. -+..-+. +|..-+-. .+....+|.. |
T Consensus 871 edvksAAs~ALGsl~vgnl~-------~yLpfil~qi~sqpk-~QyLLLhSlkevi~~~svd~~~~~v~~IW~l-----L 937 (1233)
T KOG1824|consen 871 EDVKSAASYALGSLAVGNLP-------KYLPFILEQIESQPK-RQYLLLHSLKEVIVSASVDGLKPYVEKIWAL-----L 937 (1233)
T ss_pred HHHHHHHHHHhhhhhcCchH-------hHHHHHHHHHhcchH-hHHHHHHHHHHHHHHhccchhhhhHHHHHHH-----H
Confidence 88888888888888864322 134444444433211 1111111 11111111 1111111110 0
Q ss_pred c-cchhHHhhhHHHHHHHHHHHHHHhhhchHHHHHHHHhhcchhHHHHHHHHHHhccCCCCCceeeecCCCHHHHHHHhc
Q 005044 421 Q-DGEFIVQATKDCVAKTLKRLEEKIHGRVLNHLLYLMRVAEKGVQRRVALALAHLCSPDDQRTIFIDGGGLELLLGLLG 499 (717)
Q Consensus 421 ~-~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~~~~~~l~~L~~ll~ 499 (717)
. +........+..+++.+.++.-.-.+..+|+|-..+.++.+..|..++.++..........-.......+..++.+++
T Consensus 938 ~k~cE~~eegtR~vvAECLGkL~l~epesLlpkL~~~~~S~a~~~rs~vvsavKfsisd~p~~id~~lk~~ig~fl~~~~ 1017 (1233)
T KOG1824|consen 938 FKHCECAEEGTRNVVAECLGKLVLIEPESLLPKLKLLLRSEASNTRSSVVSAVKFSISDQPQPIDPLLKQQIGDFLKLLR 1017 (1233)
T ss_pred HHhcccchhhhHHHHHHHhhhHHhCChHHHHHHHHHHhcCCCcchhhhhhheeeeeecCCCCccCHHHHHHHHHHHHHHh
Confidence 0 000011122444555555655555667899999999999999998888877665544332222233455678889999
Q ss_pred CCCchhhhhhHHHHHHhhhcc
Q 005044 500 STNPKQQLDGAVALFKLANKA 520 (717)
Q Consensus 500 ~~~~~v~~~a~~~l~~L~~~~ 520 (717)
+++.+|++.|..++...+++.
T Consensus 1018 dpDl~VrrvaLvv~nSaahNK 1038 (1233)
T KOG1824|consen 1018 DPDLEVRRVALVVLNSAAHNK 1038 (1233)
T ss_pred CCchhHHHHHHHHHHHHHccC
Confidence 999999999999988777753
No 76
>KOG4413 consensus 26S proteasome regulatory complex, subunit PSMD5 [Posttranslational modification, protein turnover, chaperones]
Probab=98.68 E-value=1.4e-05 Score=75.41 Aligned_cols=328 Identities=14% Similarity=0.137 Sum_probs=211.2
Q ss_pred HHHhHHHHHHHHhc-CCh--hhHH--HHHhCCChHHHHHHHhccccCCCccchhHHHHHHHHHHHHHhhcCchhhhHHHh
Q 005044 131 EVEKGSAFALGLLA-VKP--EHQQ--LIVDNGALSHLVNLLKRHMDSNCSRAVNSVIRRAADAITNLAHENSSIKTRVRM 205 (717)
Q Consensus 131 ~v~~~a~~~L~~l~-~~~--~~~~--~~~~~~~i~~L~~lL~~~~~~~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~ 205 (717)
.|+..++..++-+. +.. .... .++..+.++.++..+-..+. ++...|...+..++. .+..-..++.
T Consensus 97 sVKiLackqigcilEdcDtnaVseillvvNaeilklildcIggedd--------eVAkAAiesikrial-fpaaleaiFe 167 (524)
T KOG4413|consen 97 SVKILACKQIGCILEDCDTNAVSEILLVVNAEILKLILDCIGGEDD--------EVAKAAIESIKRIAL-FPAALEAIFE 167 (524)
T ss_pred hhhhhhHhhhhHHHhcCchhhHHHHHHHhhhhHHHHHHHHHcCCcH--------HHHHHHHHHHHHHHh-cHHHHHHhcc
Confidence 78888999888888 333 2222 34477889999999988776 899999999999987 4444445555
Q ss_pred cCCcH--HHHHhhcCCCHHHHHHHHHHHHHhhccChhhHHHHHhcCCHHHHHHHHcC-CCHHHHHHHHHHHHHhhcCChH
Q 005044 206 EGGIP--PLVELLEFTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRS-EDSAIHYEAVGVIGNLVHSSPN 282 (717)
Q Consensus 206 ~~~i~--~L~~ll~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~g~i~~L~~ll~~-~~~~v~~~a~~~L~~l~~~~~~ 282 (717)
+.... .+..+....+.-+|..++..+..+.+-+++......++|.+..|..-++. .|.-|+..++.....++.. ..
T Consensus 168 SellDdlhlrnlaakcndiaRvRVleLIieifSiSpesaneckkSGLldlLeaElkGteDtLVianciElvteLaet-eH 246 (524)
T KOG4413|consen 168 SELLDDLHLRNLAAKCNDIARVRVLELIIEIFSISPESANECKKSGLLDLLEAELKGTEDTLVIANCIELVTELAET-EH 246 (524)
T ss_pred cccCChHHHhHHHhhhhhHHHHHHHHHHHHHHhcCHHHHhHhhhhhHHHHHHHHhcCCcceeehhhHHHHHHHHHHH-hh
Confidence 55543 33444445566677888888888888788888888889999999988887 6778888899998888754 34
Q ss_pred HHHHHHHcCChHHHHHhhccCChH--HHHHHHHHHHHHhcCChhhHHHHHhc-------CChHHHHHHhcCCCHHHHHHH
Q 005044 283 IKKEVLAAGALQPVIGLLSSCCSE--SQREAALLLGQFAATDSDCKVHIVQR-------GAVRPLIEMLQSPDVQLREMS 353 (717)
Q Consensus 283 ~~~~~~~~g~l~~L~~ll~~~~~~--~~~~a~~~L~~l~~~~~~~~~~l~~~-------~~l~~L~~~l~~~~~~v~~~a 353 (717)
.++.+.+.|+++.+..++...+.+ -.-.+....+.+-+. .....+... -.+....+++...|++.+..|
T Consensus 247 greflaQeglIdlicnIIsGadsdPfekfralmgfgkffgk--eaimdvseeaicealiiaidgsfEmiEmnDpdaieaA 324 (524)
T KOG4413|consen 247 GREFLAQEGLIDLICNIISGADSDPFEKFRALMGFGKFFGK--EAIMDVSEEAICEALIIAIDGSFEMIEMNDPDAIEAA 324 (524)
T ss_pred hhhhcchhhHHHHHHHHhhCCCCCcHHHHHHHHHHHHHhcc--hHHhhcCHHHHHHHHHHHHHhhHHhhhcCCchHHHHH
Confidence 456777889999999998754322 222233333333211 111111111 123445556677899999999
Q ss_pred HHHHHHhhcCCCCchhhHhcCC--hHH-HHHhhcCCChhHHHHHHHHHHhccCCCcchH-HHHHhcCccccccchhHHhh
Q 005044 354 AFALGRLAQDMHNQAGIAHNGG--LVP-LLKLLDSKNGSLQHNAAFALYGLADNEDNVA-DFIRVGGVQKLQDGEFIVQA 429 (717)
Q Consensus 354 ~~~L~~l~~~~~~~~~l~~~~~--l~~-L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~-~l~~~~~i~~L~~~~~~~~~ 429 (717)
..+++.+..+.+....+...|- ... +.+..+.+...-+..+..+|.+++..-...+ ++.+.... .
T Consensus 325 iDalGilGSnteGadlllkTgppaaehllarafdqnahakqeaaihaLaaIagelrlkpeqitDgkae-----------e 393 (524)
T KOG4413|consen 325 IDALGILGSNTEGADLLLKTGPPAAEHLLARAFDQNAHAKQEAAIHALAAIAGELRLKPEQITDGKAE-----------E 393 (524)
T ss_pred HHHHHhccCCcchhHHHhccCChHHHHHHHHHhcccccchHHHHHHHHHHhhccccCChhhccccHHH-----------H
Confidence 9999999988777766666654 333 3344444444556778888888875322111 11111111 1
Q ss_pred hHHHHHHHHHHHHHHhhhchHHHHHHHHhhcchhHHHHHHHHHHhccCCCCCce
Q 005044 430 TKDCVAKTLKRLEEKIHGRVLNHLLYLMRVAEKGVQRRVALALAHLCSPDDQRT 483 (717)
Q Consensus 430 ~~~~~~~~~~~l~~~~~~~~~~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~ 483 (717)
...|++.- .+..-..-+-++-+...+..+.|+++..+.+.+..++..+-..+
T Consensus 394 rlrclifd--aaaqstkldPleLFlgilqQpfpEihcAalktfTAiaaqPWalk 445 (524)
T KOG4413|consen 394 RLRCLIFD--AAAQSTKLDPLELFLGILQQPFPEIHCAALKTFTAIAAQPWALK 445 (524)
T ss_pred HHHHHHHH--HHhhccCCChHHHHHHHHcCCChhhHHHHHHHHHHHHcCcHHHH
Confidence 11222211 11111112344556777888899999999999999988776443
No 77
>KOG0213 consensus Splicing factor 3b, subunit 1 [RNA processing and modification]
Probab=98.67 E-value=5.6e-06 Score=86.24 Aligned_cols=255 Identities=15% Similarity=0.093 Sum_probs=158.0
Q ss_pred HHHHcCCCHHHHHHHHHHHHHhhcCChHHHH--HHHHcCChHHHHHhhccCChHHHHHHHHHHHHHhcCChhhHHHHHhc
Q 005044 255 ILMLRSEDSAIHYEAVGVIGNLVHSSPNIKK--EVLAAGALQPVIGLLSSCCSESQREAALLLGQFAATDSDCKVHIVQR 332 (717)
Q Consensus 255 ~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~--~~~~~g~l~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~l~~~ 332 (717)
+..|++..+.+|..|+..++.++.--..+.. .+...| ..|.+.|....+++.-..+.++..+...-.-.+..-=-.
T Consensus 805 L~rLnnksa~vRqqaadlis~la~Vlktc~ee~~m~~lG--vvLyEylgeeypEvLgsILgAikaI~nvigm~km~pPi~ 882 (1172)
T KOG0213|consen 805 LWRLNNKSAKVRQQAADLISSLAKVLKTCGEEKLMGHLG--VVLYEYLGEEYPEVLGSILGAIKAIVNVIGMTKMTPPIK 882 (1172)
T ss_pred HHHhcCCChhHHHHHHHHHHHHHHHHHhccHHHHHHHhh--HHHHHhcCcccHHHHHHHHHHHHHHHHhccccccCCChh
Confidence 3444556667777777777666532221111 111112 245666777778887777776666642110000101125
Q ss_pred CChHHHHHHhcCCCHHHHHHHHHHHHHhhcCCCCc---hhhHhcCChHHHHHhhcCCChhHHHHHHHHHHhccCCCcchH
Q 005044 333 GAVRPLIEMLQSPDVQLREMSAFALGRLAQDMHNQ---AGIAHNGGLVPLLKLLDSKNGSLQHNAAFALYGLADNEDNVA 409 (717)
Q Consensus 333 ~~l~~L~~~l~~~~~~v~~~a~~~L~~l~~~~~~~---~~l~~~~~l~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~ 409 (717)
+++|.|..+|++....++++++..++.+|...+.. .++.. +--.|+++|.+.+.+++++|...++.++..-....
T Consensus 883 dllPrltPILknrheKVqen~IdLvg~IadrgpE~v~aREWMR--IcfeLlelLkahkK~iRRaa~nTfG~IakaIGPqd 960 (1172)
T KOG0213|consen 883 DLLPRLTPILKNRHEKVQENCIDLVGTIADRGPEYVSAREWMR--ICFELLELLKAHKKEIRRAAVNTFGYIAKAIGPQD 960 (1172)
T ss_pred hhcccchHhhhhhHHHHHHHHHHHHHHHHhcCcccCCHHHHHH--HHHHHHHHHHHHHHHHHHHHHhhhhHHHHhcCHHH
Confidence 68999999999999999999999999999643321 22222 33448889999999999999999999986433222
Q ss_pred HHHHhcCccccccc-hhHHhhhHHHHHHHHHHHHHHh-hhchHHHHHHHHhhcchhHHHHHHHHHHhccCCCC--Cceee
Q 005044 410 DFIRVGGVQKLQDG-EFIVQATKDCVAKTLKRLEEKI-HGRVLNHLLYLMRVAEKGVQRRVALALAHLCSPDD--QRTIF 485 (717)
Q Consensus 410 ~l~~~~~i~~L~~~-~~~~~~~~~~~~~~~~~l~~~~-~~~~~~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~--~~~~~ 485 (717)
. +..|++. .......+-|-.-.+....+.+ -..++|.|.+=-..++..||.-.+.+|+.+-.... ....+
T Consensus 961 V------LatLlnnLkvqeRq~RvcTtvaIaIVaE~c~pFtVLPalmneYrtPe~nVQnGVLkalsf~FeyigemskdYi 1034 (1172)
T KOG0213|consen 961 V------LATLLNNLKVQERQNRVCTTVAIAIVAETCGPFTVLPALMNEYRTPEANVQNGVLKALSFMFEYIGEMSKDYI 1034 (1172)
T ss_pred H------HHHHHhcchHHHHHhchhhhhhhhhhhhhcCchhhhHHHHhhccCchhHHHHhHHHHHHHHHHHHHHHhhhHH
Confidence 2 1222221 1111122333332332222222 33578888888888899999999999998854422 22221
Q ss_pred ecCCCHHHHHHHhcCCCchhhhhhHHHHHHhhhccc
Q 005044 486 IDGGGLELLLGLLGSTNPKQQLDGAVALFKLANKAT 521 (717)
Q Consensus 486 ~~~~~l~~L~~ll~~~~~~v~~~a~~~l~~L~~~~~ 521 (717)
-...|.|...+.+.+...|..|+.++.+|+-+..
T Consensus 1035 --yav~PlleDAlmDrD~vhRqta~~~I~Hl~Lg~~ 1068 (1172)
T KOG0213|consen 1035 --YAVTPLLEDALMDRDLVHRQTAMNVIKHLALGVP 1068 (1172)
T ss_pred --HHhhHHHHHhhccccHHHHHHHHHHHHHHhcCCC
Confidence 2356888888888999999999999999887643
No 78
>KOG2973 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.59 E-value=6.2e-06 Score=77.39 Aligned_cols=298 Identities=16% Similarity=0.146 Sum_probs=188.1
Q ss_pred HHHHHhhcCCCHHHHHHHHHHHHHhhccChhhHHHH-HhcCCHHHHHHHHcCCCHHHHHHHHHHHHHhhcCChHHHHHHH
Q 005044 210 PPLVELLEFTDTKVQRAAAGALRTLAFKNDENKNQI-VECNALPTLILMLRSEDSAIHYEAVGVIGNLVHSSPNIKKEVL 288 (717)
Q Consensus 210 ~~L~~ll~~~~~~v~~~a~~~L~~L~~~~~~~~~~~-~~~g~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~ 288 (717)
..++.++.+.+|.++..|..-+..++.. ..+... .+...++.+.++++..++ ...|+.+|.|++.. +..++.++
T Consensus 6 ~elv~ll~~~sP~v~~~AV~~l~~lt~~--~~~~~~~~~~~~lk~l~qL~~~~~~--~~~a~~alVnlsq~-~~l~~~ll 80 (353)
T KOG2973|consen 6 VELVELLHSLSPPVRKAAVEHLLGLTGR--GLQSLSKYSEALLKDLTQLLKDLDP--AEPAATALVNLSQK-EELRKKLL 80 (353)
T ss_pred HHHHHHhccCChHHHHHHHHHHhhcccc--chhhhccchhhhHHHHHHHccCccc--ccHHHHHHHHHHhh-HHHHHHHH
Confidence 3578899999999999999999999863 221111 123467889999988776 78899999999765 55556666
Q ss_pred HcCChHHHHHhhccCChHHHHHHHHHHHHHhcCChhhHHHHHh------cCChHHHHHHhcCC-CH-HHHHHHHHHHHHh
Q 005044 289 AAGALQPVIGLLSSCCSESQREAALLLGQFAATDSDCKVHIVQ------RGAVRPLIEMLQSP-DV-QLREMSAFALGRL 360 (717)
Q Consensus 289 ~~g~l~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~l~~------~~~l~~L~~~l~~~-~~-~v~~~a~~~L~~l 360 (717)
+. +++.++..+.++.+......+..+.|++..+......+.. .|.+.........+ +. .-..+.+..+.||
T Consensus 81 ~~-~~k~l~~~~~~p~~~lad~~cmlL~NLs~~~~~~~~ll~~~~~~~~~~lm~l~~~~~d~~~n~~a~f~ylA~vf~nl 159 (353)
T KOG2973|consen 81 QD-LLKVLMDMLTDPQSPLADLICMLLSNLSRDDDEVAALLTNLTEKKDSGLMRLARAFCDKSYNAYAEFHYLAPVFANL 159 (353)
T ss_pred HH-HHHHHHHHhcCcccchHHHHHHHHHHhccCchHHHHHHHhcccccccchHHHHHHHhCcccccccchhHHHHHHHHH
Confidence 66 8889999999888888899999999998665544433222 34444444555432 21 2234567788999
Q ss_pred hcCCCCchhhHhcCChHH-HHHhhcCCChhHHH-HHHHHHHhccCCCcchHHHHHhcCccccccchhHHhhhHHHHHHHH
Q 005044 361 AQDMHNQAGIAHNGGLVP-LLKLLDSKNGSLQH-NAAFALYGLADNEDNVADFIRVGGVQKLQDGEFIVQATKDCVAKTL 438 (717)
Q Consensus 361 ~~~~~~~~~l~~~~~l~~-L~~ll~~~~~~v~~-~a~~~L~~l~~~~~~~~~l~~~~~i~~L~~~~~~~~~~~~~~~~~~ 438 (717)
++....|..+.....++. .+.-+.+.+..+|. ..+.+|.|.+-.......+...+ +..|..... +. ...
T Consensus 160 s~~~~gR~l~~~~k~~p~~kll~ft~~~s~vRr~GvagtlkN~cFd~~~h~~lL~e~-~~lLp~iLl---Pl----agp- 230 (353)
T KOG2973|consen 160 SQFEAGRKLLLEPKRFPDQKLLPFTSEDSQVRRGGVAGTLKNCCFDAKLHEVLLDES-INLLPAILL---PL----AGP- 230 (353)
T ss_pred hhhhhhhhHhcchhhhhHhhhhcccccchhhhccchHHHHHhhhccchhHHHHhcch-HHHHHHHHh---hc----CCc-
Confidence 988888877776663322 22223344555544 57788999886666655555422 111100000 00 000
Q ss_pred HHHHHHhhhchHHHHHHHHh-----hcchhHHHHHHHHHHhccCCCCCceeeecCCCHHHHHHHhcC-CCchhhhhhHHH
Q 005044 439 KRLEEKIHGRVLNHLLYLMR-----VAEKGVQRRVALALAHLCSPDDQRTIFIDGGGLELLLGLLGS-TNPKQQLDGAVA 512 (717)
Q Consensus 439 ~~l~~~~~~~~~~~L~~ll~-----~~~~~v~~~a~~aL~~l~~~~~~~~~~~~~~~l~~L~~ll~~-~~~~v~~~a~~~ 512 (717)
+.+.+.=-.++-..| +++- .+++.++..-+.+|..++....+++.+...|+-|.+-.+-+. .+++++..+-..
T Consensus 231 ee~sEEdm~~LP~eL-QyLp~dKeRepdpdIrk~llEai~lLcaT~~GRe~lR~kgvYpilRElhk~e~ded~~~ace~v 309 (353)
T KOG2973|consen 231 EELSEEDMAKLPVEL-QYLPEDKEREPDPDIRKMLLEALLLLCATRAGREVLRSKGVYPILRELHKWEEDEDIREACEQV 309 (353)
T ss_pred cccCHHHHhcCCHhh-hcCCccccCCCChHHHHHHHHHHHHHHhhhHhHHHHHhcCchHHHHHHhcCCCcHHHHHHHHHH
Confidence 000000011222333 4443 358899999999999999988888887776666666655544 667777666666
Q ss_pred HHHhhhccccc
Q 005044 513 LFKLANKATTL 523 (717)
Q Consensus 513 l~~L~~~~~~~ 523 (717)
...+....+..
T Consensus 310 vq~Lv~~e~~~ 320 (353)
T KOG2973|consen 310 VQMLVRLEPEI 320 (353)
T ss_pred HHHHHhccccc
Confidence 66666654433
No 79
>KOG0212 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.58 E-value=3.2e-06 Score=85.51 Aligned_cols=319 Identities=15% Similarity=0.119 Sum_probs=207.5
Q ss_pred CCChHHHHHHHhccccCCCccchhHHHHHHHHHHHHHhhcCchhhhHHHhcCCcHHHHHhhcCCCHHHHHHHHHHHHHhh
Q 005044 156 NGALSHLVNLLKRHMDSNCSRAVNSVIRRAADAITNLAHENSSIKTRVRMEGGIPPLVELLEFTDTKVQRAAAGALRTLA 235 (717)
Q Consensus 156 ~~~i~~L~~lL~~~~~~~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~L~ 235 (717)
.+.+++++..+.+.+. .++..|+..+.|++....... ......+...+.++..+++..++.. ...+-.+.
T Consensus 83 ~~iv~Pv~~cf~D~d~--------~vRyyACEsLYNiaKv~k~~v-~~~Fn~iFdvL~klsaDsd~~V~~~-aeLLdRLi 152 (675)
T KOG0212|consen 83 EKIVPPVLNCFSDQDS--------QVRYYACESLYNIAKVAKGEV-LVYFNEIFDVLCKLSADSDQNVRGG-AELLDRLI 152 (675)
T ss_pred HHhhHHHHHhccCccc--------eeeeHhHHHHHHHHHHhccCc-ccchHHHHHHHHHHhcCCccccccH-HHHHHHHH
Confidence 4668888888888876 899999999999986322111 1111223344555555666555543 34444444
Q ss_pred ccChhhHH-HHHhcCCHHHHHHHHcCCCHHHHHHHHHHHHHhhcCChHHHHHHHHcCChHHHHHhhccCChHHHHHHHHH
Q 005044 236 FKNDENKN-QIVECNALPTLILMLRSEDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLSSCCSESQREAALL 314 (717)
Q Consensus 236 ~~~~~~~~-~~~~~g~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~l~~L~~ll~~~~~~~~~~a~~~ 314 (717)
.+-..... .+.-.+++|.|-.-+..-++..|...+.-|..+-.. +...-.-.-..+++.|..+|.+.+.+++..+-.+
T Consensus 153 kdIVte~~~tFsL~~~ipLL~eriy~~n~~tR~flv~Wl~~Lds~-P~~~m~~yl~~~ldGLf~~LsD~s~eVr~~~~t~ 231 (675)
T KOG0212|consen 153 KDIVTESASTFSLPEFIPLLRERIYVINPMTRQFLVSWLYVLDSV-PDLEMISYLPSLLDGLFNMLSDSSDEVRTLTDTL 231 (675)
T ss_pred HHhccccccccCHHHHHHHHHHHHhcCCchHHHHHHHHHHHHhcC-CcHHHHhcchHHHHHHHHHhcCCcHHHHHHHHHH
Confidence 31111111 222234566666666667889999988888777332 3321111224578889999999999999877776
Q ss_pred HHHHhc---CChhhHHHHHhcCChHHHHHHhcCCCHHHHHHHHHHHHHhhcCCCCchhhHhcCChHHHHHhhcCCChh-H
Q 005044 315 LGQFAA---TDSDCKVHIVQRGAVRPLIEMLQSPDVQLREMSAFALGRLAQDMHNQAGIAHNGGLVPLLKLLDSKNGS-L 390 (717)
Q Consensus 315 L~~l~~---~~~~~~~~l~~~~~l~~L~~~l~~~~~~v~~~a~~~L~~l~~~~~~~~~l~~~~~l~~L~~ll~~~~~~-v 390 (717)
+.++-. ..|.. +--...++.++..++++++.++..|+.-+..+..-.+..-...-.|.+..++.++.+.+.. +
T Consensus 232 l~~fL~eI~s~P~s---~d~~~~i~vlv~~l~ss~~~iq~~al~Wi~efV~i~g~~~l~~~s~il~~iLpc~s~~e~~~i 308 (675)
T KOG0212|consen 232 LSEFLAEIRSSPSS---MDYDDMINVLVPHLQSSEPEIQLKALTWIQEFVKIPGRDLLLYLSGILTAILPCLSDTEEMSI 308 (675)
T ss_pred HHHHHHHHhcCccc---cCcccchhhccccccCCcHHHHHHHHHHHHHHhcCCCcchhhhhhhhhhhcccCCCCCccccH
Confidence 666531 12221 1224578889999999999999998887888877655555555567777777777766553 3
Q ss_pred HHHHHH---HHHhccCCCcchHHHHHhcCccccccchhHHhhhHHHHHHHHHHHHHHhhhchHHHHHHHHhhcchhHHHH
Q 005044 391 QHNAAF---ALYGLADNEDNVADFIRVGGVQKLQDGEFIVQATKDCVAKTLKRLEEKIHGRVLNHLLYLMRVAEKGVQRR 467 (717)
Q Consensus 391 ~~~a~~---~L~~l~~~~~~~~~l~~~~~i~~L~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~L~~ll~~~~~~v~~~ 467 (717)
+..+.. .+..+...+..... ++. ..++..|...+.+...+.|..
T Consensus 309 ~~~a~~~n~~l~~l~s~~~~~~~-id~--------------------------------~~ii~vl~~~l~~~~~~tri~ 355 (675)
T KOG0212|consen 309 KEYAQMVNGLLLKLVSSERLKEE-IDY--------------------------------GSIIEVLTKYLSDDREETRIA 355 (675)
T ss_pred HHHHHHHHHHHHHHHhhhhhccc-cch--------------------------------HHHHHHHHHHhhcchHHHHHH
Confidence 333322 23333322222111 111 126777888899999999999
Q ss_pred HHHHHHhccCCCCCceeeecCCCHHHHHHHhcCCCchhhhhhHHHHHHhhhccc
Q 005044 468 VALALAHLCSPDDQRTIFIDGGGLELLLGLLGSTNPKQQLDGAVALFKLANKAT 521 (717)
Q Consensus 468 a~~aL~~l~~~~~~~~~~~~~~~l~~L~~ll~~~~~~v~~~a~~~l~~L~~~~~ 521 (717)
++.-+..+-....++-........+.|..-+.+.+.+|...+...+.+++.+..
T Consensus 356 ~L~Wi~~l~~~~p~ql~~h~~~if~tLL~tLsd~sd~vvl~~L~lla~i~~s~~ 409 (675)
T KOG0212|consen 356 VLNWIILLYHKAPGQLLVHNDSIFLTLLKTLSDRSDEVVLLALSLLASICSSSN 409 (675)
T ss_pred HHHHHHHHHhhCcchhhhhccHHHHHHHHhhcCchhHHHHHHHHHHHHHhcCcc
Confidence 999888887666666555667788999999999999999999999999998754
No 80
>KOG0212 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.58 E-value=2.4e-06 Score=86.39 Aligned_cols=353 Identities=15% Similarity=0.134 Sum_probs=218.9
Q ss_pred CCChHHHHHhhcCCCCCccccCCCccchHHHhHHHHHHHHhcCChhhHHHHHhCCChHHHHHHHhccccCCCccchhHHH
Q 005044 103 GGAVPALVKHLQAPPTSEADRNLKPFEHEVEKGSAFALGLLAVKPEHQQLIVDNGALSHLVNLLKRHMDSNCSRAVNSVI 182 (717)
Q Consensus 103 ~g~i~~L~~lL~~~~~~~~~~~~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~i~~L~~lL~~~~~~~~~~~~~~~~ 182 (717)
.+.+|..+..+.+.+. .+|--|+..|.|++.................+.++..+.+. ..
T Consensus 83 ~~iv~Pv~~cf~D~d~------------~vRyyACEsLYNiaKv~k~~v~~~Fn~iFdvL~klsaDsd~---------~V 141 (675)
T KOG0212|consen 83 EKIVPPVLNCFSDQDS------------QVRYYACESLYNIAKVAKGEVLVYFNEIFDVLCKLSADSDQ---------NV 141 (675)
T ss_pred HHhhHHHHHhccCccc------------eeeeHhHHHHHHHHHHhccCcccchHHHHHHHHHHhcCCcc---------cc
Confidence 4568888888888777 89999999999999322222222233445556666555543 22
Q ss_pred HHHHHHHHHHhhcCchhhh-HHHhcCCcHHHHHhhcCCCHHHHHHHHHHHHHhhccChhhHHHHH-hcCCHHHHHHHHcC
Q 005044 183 RRAADAITNLAHENSSIKT-RVRMEGGIPPLVELLEFTDTKVQRAAAGALRTLAFKNDENKNQIV-ECNALPTLILMLRS 260 (717)
Q Consensus 183 ~~a~~~L~~l~~~~~~~~~-~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~-~~g~i~~L~~ll~~ 260 (717)
+.++..+-.+..+-..-+. .+--.+.+|.|-.-+...++..|...+.-|..|-. .|+. +.+. -..+++-|...|.+
T Consensus 142 ~~~aeLLdRLikdIVte~~~tFsL~~~ipLL~eriy~~n~~tR~flv~Wl~~Lds-~P~~-~m~~yl~~~ldGLf~~LsD 219 (675)
T KOG0212|consen 142 RGGAELLDRLIKDIVTESASTFSLPEFIPLLRERIYVINPMTRQFLVSWLYVLDS-VPDL-EMISYLPSLLDGLFNMLSD 219 (675)
T ss_pred ccHHHHHHHHHHHhccccccccCHHHHHHHHHHHHhcCCchHHHHHHHHHHHHhc-CCcH-HHHhcchHHHHHHHHHhcC
Confidence 3344555444432211111 33334556666666666788899888887777754 2322 2221 23567788899999
Q ss_pred CCHHHHHHHHHHHHHhhc---CChHHHHHHHHcCChHHHHHhhccCChHHHHHHHHHHHHHhcCChhhHHHHHhcCChHH
Q 005044 261 EDSAIHYEAVGVIGNLVH---SSPNIKKEVLAAGALQPVIGLLSSCCSESQREAALLLGQFAATDSDCKVHIVQRGAVRP 337 (717)
Q Consensus 261 ~~~~v~~~a~~~L~~l~~---~~~~~~~~~~~~g~l~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~l~~~~~l~~ 337 (717)
++++|+..+=.+++++.. +.+.. +--...++.++.-+.++++.++..|...+..+..-.+.. ....-.|++..
T Consensus 220 ~s~eVr~~~~t~l~~fL~eI~s~P~s---~d~~~~i~vlv~~l~ss~~~iq~~al~Wi~efV~i~g~~-~l~~~s~il~~ 295 (675)
T KOG0212|consen 220 SSDEVRTLTDTLLSEFLAEIRSSPSS---MDYDDMINVLVPHLQSSEPEIQLKALTWIQEFVKIPGRD-LLLYLSGILTA 295 (675)
T ss_pred CcHHHHHHHHHHHHHHHHHHhcCccc---cCcccchhhccccccCCcHHHHHHHHHHHHHHhcCCCcc-hhhhhhhhhhh
Confidence 999999887777766632 11211 111346888888999999999998888777775432222 22334677777
Q ss_pred HHHHhcCCCHH-HHHHHHH---HHHHhhcCCCCchhhHhcCChHHHHHhhcCCChhHHHHHHHHHHhccCCCcchHHHHH
Q 005044 338 LIEMLQSPDVQ-LREMSAF---ALGRLAQDMHNQAGIAHNGGLVPLLKLLDSKNGSLQHNAAFALYGLADNEDNVADFIR 413 (717)
Q Consensus 338 L~~~l~~~~~~-v~~~a~~---~L~~l~~~~~~~~~l~~~~~l~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~l~~ 413 (717)
++..+.+.++. ++..+.. .|..++........+--...+..+.+.+.++..+.+-.++.-+..|-...++.- +
T Consensus 296 iLpc~s~~e~~~i~~~a~~~n~~l~~l~s~~~~~~~id~~~ii~vl~~~l~~~~~~tri~~L~Wi~~l~~~~p~ql-~-- 372 (675)
T KOG0212|consen 296 ILPCLSDTEEMSIKEYAQMVNGLLLKLVSSERLKEEIDYGSIIEVLTKYLSDDREETRIAVLNWIILLYHKAPGQL-L-- 372 (675)
T ss_pred cccCCCCCccccHHHHHHHHHHHHHHHHhhhhhccccchHHHHHHHHHHhhcchHHHHHHHHHHHHHHHhhCcchh-h--
Confidence 88888776553 4443332 233444333333332223456668888888888888888877777754433311 1
Q ss_pred hcCccccccchhHHhhhHHHHHHHHHHHHHHhhhchHHHHHHHHhhcchhHHHHHHHHHHhccCCCCCceeeecCCCHHH
Q 005044 414 VGGVQKLQDGEFIVQATKDCVAKTLKRLEEKIHGRVLNHLLYLMRVAEKGVQRRVALALAHLCSPDDQRTIFIDGGGLEL 493 (717)
Q Consensus 414 ~~~i~~L~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~~~~~~l~~ 493 (717)
+....+.+.|++-|.+++.++...++..+.+++.+++..-. ...+..
T Consensus 373 ------------------------------~h~~~if~tLL~tLsd~sd~vvl~~L~lla~i~~s~~~~~~---~~fl~s 419 (675)
T KOG0212|consen 373 ------------------------------VHNDSIFLTLLKTLSDRSDEVVLLALSLLASICSSSNSPNL---RKFLLS 419 (675)
T ss_pred ------------------------------hhccHHHHHHHHhhcCchhHHHHHHHHHHHHHhcCcccccH---HHHHHH
Confidence 12334778899999999999999999999999988764311 223444
Q ss_pred HHHHhcCCCchhhhhhHHHHHHhhh
Q 005044 494 LLGLLGSTNPKQQLDGAVALFKLAN 518 (717)
Q Consensus 494 L~~ll~~~~~~v~~~a~~~l~~L~~ 518 (717)
|.++......-+...+.-.+.+|+.
T Consensus 420 LL~~f~e~~~~l~~Rg~lIIRqlC~ 444 (675)
T KOG0212|consen 420 LLEMFKEDTKLLEVRGNLIIRQLCL 444 (675)
T ss_pred HHHHHhhhhHHHHhhhhHHHHHHHH
Confidence 4555555555566666666666654
No 81
>KOG1059 consensus Vesicle coat complex AP-3, delta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.51 E-value=4.4e-05 Score=79.73 Aligned_cols=204 Identities=13% Similarity=0.166 Sum_probs=131.3
Q ss_pred HHHHHHHHHHHHHHhhc-ChhhHHHHHhCCChHHHHHhhcCCCCCccccCCCccchHHHhHHHHHHHHhc-CChhhHHHH
Q 005044 76 DRAAAKRATHVLAELAK-NEEVVNWIVEGGAVPALVKHLQAPPTSEADRNLKPFEHEVEKGSAFALGLLA-VKPEHQQLI 153 (717)
Q Consensus 76 ~~~~~~~a~~~L~~l~~-~~~~~~~~~~~g~i~~L~~lL~~~~~~~~~~~~~~~~~~v~~~a~~~L~~l~-~~~~~~~~~ 153 (717)
|+.++..|+..++.+++ +|.+.-.+ -|.+.++|.+.+.. -+....++.+++|+ -.|....
T Consensus 194 Dp~V~SAAV~VICELArKnPknyL~L-----AP~ffkllttSsNN-----------WmLIKiiKLF~aLtplEPRLgK-- 255 (877)
T KOG1059|consen 194 DPSVVSAAVSVICELARKNPQNYLQL-----APLFYKLLVTSSNN-----------WVLIKLLKLFAALTPLEPRLGK-- 255 (877)
T ss_pred CchHHHHHHHHHHHHHhhCCcccccc-----cHHHHHHHhccCCC-----------eehHHHHHHHhhccccCchhhh--
Confidence 66677888888888887 66654433 47777777665542 56677788888888 6666543
Q ss_pred HhCCChHHHHHHHhccccCCCccchhHHHHHHHHHHH--HHhhcCchhhhHHHhcCCcHHHHHhhcCCCHHHHHHHHHHH
Q 005044 154 VDNGALSHLVNLLKRHMDSNCSRAVNSVIRRAADAIT--NLAHENSSIKTRVRMEGGIPPLVELLEFTDTKVQRAAAGAL 231 (717)
Q Consensus 154 ~~~~~i~~L~~lL~~~~~~~~~~~~~~~~~~a~~~L~--~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L 231 (717)
..+++|.+++.+.... .+...|+.++. ++..+.+.....+ .-++..|-.++.++|+.++..++-++
T Consensus 256 ---KLieplt~li~sT~Am-------SLlYECvNTVVa~s~s~g~~d~~asi--qLCvqKLr~fiedsDqNLKYlgLlam 323 (877)
T KOG1059|consen 256 ---KLIEPITELMESTVAM-------SLLYECVNTVVAVSMSSGMSDHSASI--QLCVQKLRIFIEDSDQNLKYLGLLAM 323 (877)
T ss_pred ---hhhhHHHHHHHhhHHH-------HHHHHHHHHheeehhccCCCCcHHHH--HHHHHHHhhhhhcCCccHHHHHHHHH
Confidence 3467888888765432 45555555443 3333332222221 12567777788899999999999999
Q ss_pred HHhhccChhhHHHHHhcCCHHHHHHHHcCCCHHHHHHHHHHHHHhhcCChHHHHHHHHcCChHHHHHhhccCC-hHHHHH
Q 005044 232 RTLAFKNDENKNQIVECNALPTLILMLRSEDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLSSCC-SESQRE 310 (717)
Q Consensus 232 ~~L~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~l~~L~~ll~~~~-~~~~~~ 310 (717)
+.+....+...... -+.++++|.+.|+.+|..|+..|..+.. ..+... ++..|+.-+...+ ...+..
T Consensus 324 ~KI~ktHp~~Vqa~-----kdlIlrcL~DkD~SIRlrALdLl~gmVs--kkNl~e-----IVk~LM~~~~~ae~t~yrde 391 (877)
T KOG1059|consen 324 SKILKTHPKAVQAH-----KDLILRCLDDKDESIRLRALDLLYGMVS--KKNLME-----IVKTLMKHVEKAEGTNYRDE 391 (877)
T ss_pred HHHhhhCHHHHHHh-----HHHHHHHhccCCchhHHHHHHHHHHHhh--hhhHHH-----HHHHHHHHHHhccchhHHHH
Confidence 99986444332221 3668899999999999999999999863 222222 2445555444333 356666
Q ss_pred HHHHHHHHhcC
Q 005044 311 AALLLGQFAAT 321 (717)
Q Consensus 311 a~~~L~~l~~~ 321 (717)
.+.-+-.+|+.
T Consensus 392 ll~~II~iCS~ 402 (877)
T KOG1059|consen 392 LLTRIISICSQ 402 (877)
T ss_pred HHHHHHHHhhh
Confidence 66666666643
No 82
>TIGR02270 conserved hypothetical protein. Members are found in Myxococcus xanthus (six members), Geobacter sulfurreducens, and Pseudomonas aeruginosa; a short protein homologous to the N-terminal region is found in Mesorhizobium loti. All sequence are from Proteobacteria. The function is unknown.
Probab=98.50 E-value=3.2e-05 Score=79.55 Aligned_cols=210 Identities=13% Similarity=0.018 Sum_probs=138.9
Q ss_pred cHHHHHhhcCCCHHHHHHHHHHHHHhhccChhhHHHHHhcCCHHHHHHHHcCCCHHHHHHHHHHHHHhhcCChHHHHHHH
Q 005044 209 IPPLVELLEFTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSEDSAIHYEAVGVIGNLVHSSPNIKKEVL 288 (717)
Q Consensus 209 i~~L~~ll~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~ 288 (717)
+..|+..+.+.++.++..+..+|..+-. .+..+.|..+|+++++.++..++.++....
T Consensus 88 ~~~L~~~L~d~~~~vr~aaa~ALg~i~~-----------~~a~~~L~~~L~~~~p~vR~aal~al~~r~----------- 145 (410)
T TIGR02270 88 LRSVLAVLQAGPEGLCAGIQAALGWLGG-----------RQAEPWLEPLLAASEPPGRAIGLAALGAHR----------- 145 (410)
T ss_pred HHHHHHHhcCCCHHHHHHHHHHHhcCCc-----------hHHHHHHHHHhcCCChHHHHHHHHHHHhhc-----------
Confidence 5677777777777788887777776542 234566777777778877777776665521
Q ss_pred HcCChHHHHHhhccCChHHHHHHHHHHHHHhcCChhhHHHHHhcCChHHHHHHhcCCCHHHHHHHHHHHHHhhcCCCCch
Q 005044 289 AAGALQPVIGLLSSCCSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQSPDVQLREMSAFALGRLAQDMHNQA 368 (717)
Q Consensus 289 ~~g~l~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~l~~~~~l~~L~~~l~~~~~~v~~~a~~~L~~l~~~~~~~~ 368 (717)
....+.+..+|++.++.++..|+.+++.+.. ...++.|...+.+.++.||..|++++..+..
T Consensus 146 -~~~~~~L~~~L~d~d~~Vra~A~raLG~l~~-----------~~a~~~L~~al~d~~~~VR~aA~~al~~lG~------ 207 (410)
T TIGR02270 146 -HDPGPALEAALTHEDALVRAAALRALGELPR-----------RLSESTLRLYLRDSDPEVRFAALEAGLLAGS------ 207 (410)
T ss_pred -cChHHHHHHHhcCCCHHHHHHHHHHHHhhcc-----------ccchHHHHHHHcCCCHHHHHHHHHHHHHcCC------
Confidence 1124567777777778888888888877642 2345556677777888888887777755532
Q ss_pred hhHhcCChHHHHHhhcCCChhHHHHHHHHHHhccCCCcchHHHHHhcCccccccchhHHhhhHHHHHHHHHHHHHHhhhc
Q 005044 369 GIAHNGGLVPLLKLLDSKNGSLQHNAAFALYGLADNEDNVADFIRVGGVQKLQDGEFIVQATKDCVAKTLKRLEEKIHGR 448 (717)
Q Consensus 369 ~l~~~~~l~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~l~~~~~i~~L~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 448 (717)
..++..+..+...........+..++... ..+ .
T Consensus 208 ----~~A~~~l~~~~~~~g~~~~~~l~~~lal~-~~~------------------------------------------~ 240 (410)
T TIGR02270 208 ----RLAWGVCRRFQVLEGGPHRQRLLVLLAVA-GGP------------------------------------------D 240 (410)
T ss_pred ----HhHHHHHHHHHhccCccHHHHHHHHHHhC-Cch------------------------------------------h
Confidence 12334455433333333333333333322 111 2
Q ss_pred hHHHHHHHHhhcchhHHHHHHHHHHhccCCCCCceeeecCCCHHHHHHHhcCCCchhhhhhHHHHHHhhhc
Q 005044 449 VLNHLLYLMRVAEKGVQRRVALALAHLCSPDDQRTIFIDGGGLELLLGLLGSTNPKQQLDGAVALFKLANK 519 (717)
Q Consensus 449 ~~~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~~~~~~l~~L~~ll~~~~~~v~~~a~~~l~~L~~~ 519 (717)
.+..|..+++++. ++..++.+|+.+-. ...++.|+..+.+.. ++..|.+++..|+.-
T Consensus 241 a~~~L~~ll~d~~--vr~~a~~AlG~lg~----------p~av~~L~~~l~d~~--~aR~A~eA~~~ItG~ 297 (410)
T TIGR02270 241 AQAWLRELLQAAA--TRREALRAVGLVGD----------VEAAPWCLEAMREPP--WARLAGEAFSLITGM 297 (410)
T ss_pred HHHHHHHHhcChh--hHHHHHHHHHHcCC----------cchHHHHHHHhcCcH--HHHHHHHHHHHhhCC
Confidence 5677888888855 89999999997743 357899999887654 999999999999874
No 83
>PF05536 Neurochondrin: Neurochondrin
Probab=98.46 E-value=0.00022 Score=76.79 Aligned_cols=201 Identities=14% Similarity=0.149 Sum_probs=138.4
Q ss_pred HHHHHhhhhhccccchHHHHHHHHHHHHHHHHhhcC-h---hhHHHHHhCCChHHHHHhhcCCCCCccccCCCccchHHH
Q 005044 58 EVSAQVNVLNTTFSWLEADRAAAKRATHVLAELAKN-E---EVVNWIVEGGAVPALVKHLQAPPTSEADRNLKPFEHEVE 133 (717)
Q Consensus 58 ~i~~l~~~L~~~~~~~~~~~~~~~~a~~~L~~l~~~-~---~~~~~~~~~g~i~~L~~lL~~~~~~~~~~~~~~~~~~v~ 133 (717)
.+...+.+|+..- | .-++.++-.+..+.++ + ..++.+.++=+.+.|-+||++...+. .......+
T Consensus 6 ~l~~c~~lL~~~~-----D-~~rfagL~lvtk~~~~~~~~~~~~~~v~~aig~~Fl~RLL~t~~~~~-----~~~~~~~~ 74 (543)
T PF05536_consen 6 SLEKCLSLLKSAD-----D-TERFAGLLLVTKLLDADDEDSQTRRRVFEAIGFKFLDRLLRTGSVPS-----DCPPEEYL 74 (543)
T ss_pred HHHHHHHHhccCC-----c-HHHHHHHHHHHHcCCCchhhHHHHHHHHHhcChhHHHHHhcCCCCCC-----CCCHHHHH
Confidence 4566677776652 2 2378899999998883 3 33345667777899999998865421 11233788
Q ss_pred hHHHHHHHHhcCChhhHHHHHhCCChHHHHHHHhccccCCCccchhHHHHHHHHHHHHHhhcCchhhhHHHhcCCcHHHH
Q 005044 134 KGSAFALGLLAVKPEHQQLIVDNGALSHLVNLLKRHMDSNCSRAVNSVIRRAADAITNLAHENSSIKTRVRMEGGIPPLV 213 (717)
Q Consensus 134 ~~a~~~L~~l~~~~~~~~~~~~~~~i~~L~~lL~~~~~~~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~ 213 (717)
.-|+.+|+.+|..|+....---.+-||.|++.+...... ++...|..+|..++. ++..+..+.+.|+++.|.
T Consensus 75 ~LavsvL~~f~~~~~~a~~~~~~~~IP~Lle~l~~~s~~-------~~v~dalqcL~~Ias-~~~G~~aLl~~g~v~~L~ 146 (543)
T PF05536_consen 75 SLAVSVLAAFCRDPELASSPQMVSRIPLLLEILSSSSDL-------ETVDDALQCLLAIAS-SPEGAKALLESGAVPALC 146 (543)
T ss_pred HHHHHHHHHHcCChhhhcCHHHHHHHHHHHHHHHcCCch-------hHHHHHHHHHHHHHc-CcHhHHHHHhcCCHHHHH
Confidence 889999999997777653333335599999999877652 788899999999994 888888999999999999
Q ss_pred HhhcCCCHHHHHHHHHHHHHhhccChh-----hHHHHHhcCCHHHHHHHHcCCCHHHHHHHHHHHHHhhcCC
Q 005044 214 ELLEFTDTKVQRAAAGALRTLAFKNDE-----NKNQIVECNALPTLILMLRSEDSAIHYEAVGVIGNLVHSS 280 (717)
Q Consensus 214 ~ll~~~~~~v~~~a~~~L~~L~~~~~~-----~~~~~~~~g~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~ 280 (717)
+.+.+ .+.....|+.++.+++..... ....+ ..+++.+...+.......+..++..|..+....
T Consensus 147 ei~~~-~~~~~E~Al~lL~~Lls~~~~~~~~~~~~~l--~~il~~La~~fs~~~~~~kfell~~L~~~L~~~ 215 (543)
T PF05536_consen 147 EIIPN-QSFQMEIALNLLLNLLSRLGQKSWAEDSQLL--HSILPSLARDFSSFHGEDKFELLEFLSAFLPRS 215 (543)
T ss_pred HHHHh-CcchHHHHHHHHHHHHHhcchhhhhhhHHHH--HHHHHHHHHHHHhhccchHHHHHHHHHHhcCcC
Confidence 99876 566778888888888763221 11111 123445555555555555666677777765443
No 84
>KOG2973 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.43 E-value=6.6e-05 Score=70.71 Aligned_cols=244 Identities=17% Similarity=0.157 Sum_probs=161.2
Q ss_pred HHHHHHHhccccCCCccchhHHHHHHHHHHHHHhhcCchhhhHHH-hcCCcHHHHHhhcCCCHHHHHHHHHHHHHhhccC
Q 005044 160 SHLVNLLKRHMDSNCSRAVNSVIRRAADAITNLAHENSSIKTRVR-MEGGIPPLVELLEFTDTKVQRAAAGALRTLAFKN 238 (717)
Q Consensus 160 ~~L~~lL~~~~~~~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~-~~~~i~~L~~ll~~~~~~v~~~a~~~L~~L~~~~ 238 (717)
..++.++.+.++ .++..|+..+..+... ..+.... ....++.+.+++....+ .+.|+.+|.|++. +
T Consensus 6 ~elv~ll~~~sP--------~v~~~AV~~l~~lt~~--~~~~~~~~~~~~lk~l~qL~~~~~~--~~~a~~alVnlsq-~ 72 (353)
T KOG2973|consen 6 VELVELLHSLSP--------PVRKAAVEHLLGLTGR--GLQSLSKYSEALLKDLTQLLKDLDP--AEPAATALVNLSQ-K 72 (353)
T ss_pred HHHHHHhccCCh--------HHHHHHHHHHhhcccc--chhhhccchhhhHHHHHHHccCccc--ccHHHHHHHHHHh-h
Confidence 457788887776 8999999888888864 2222221 12346778888877666 6788899999997 6
Q ss_pred hhhHHHHHhcCCHHHHHHHHcCCCHHHHHHHHHHHHHhhcCChHHHHHHHH------cCChHHHHHhhccCCh--HHHHH
Q 005044 239 DENKNQIVECNALPTLILMLRSEDSAIHYEAVGVIGNLVHSSPNIKKEVLA------AGALQPVIGLLSSCCS--ESQRE 310 (717)
Q Consensus 239 ~~~~~~~~~~g~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~------~g~l~~L~~ll~~~~~--~~~~~ 310 (717)
+..++.+... .+..++..+.++.......++..|.|++............ .|.+.........+.. .-...
T Consensus 73 ~~l~~~ll~~-~~k~l~~~~~~p~~~lad~~cmlL~NLs~~~~~~~~ll~~~~~~~~~~lm~l~~~~~d~~~n~~a~f~y 151 (353)
T KOG2973|consen 73 EELRKKLLQD-LLKVLMDMLTDPQSPLADLICMLLSNLSRDDDEVAALLTNLTEKKDSGLMRLARAFCDKSYNAYAEFHY 151 (353)
T ss_pred HHHHHHHHHH-HHHHHHHHhcCcccchHHHHHHHHHHhccCchHHHHHHHhcccccccchHHHHHHHhCcccccccchhH
Confidence 7777777766 7888888888887788889999999998876655433332 3344444444443322 33455
Q ss_pred HHHHHHHHhcCChhhHHHHHhcCChH-HHHHHhcCCCHHHHHH-HHHHHHHhhcCCCCchhhHhcC--ChHHHH------
Q 005044 311 AALLLGQFAATDSDCKVHIVQRGAVR-PLIEMLQSPDVQLREM-SAFALGRLAQDMHNQAGIAHNG--GLVPLL------ 380 (717)
Q Consensus 311 a~~~L~~l~~~~~~~~~~l~~~~~l~-~L~~~l~~~~~~v~~~-a~~~L~~l~~~~~~~~~l~~~~--~l~~L~------ 380 (717)
.+.++.|++. .+..+..+.....++ ..+--+.+.+..+|.. .++.|.|+|-+..++..+...+ .++.++
T Consensus 152 lA~vf~nls~-~~~gR~l~~~~k~~p~~kll~ft~~~s~vRr~GvagtlkN~cFd~~~h~~lL~e~~~lLp~iLlPlagp 230 (353)
T KOG2973|consen 152 LAPVFANLSQ-FEAGRKLLLEPKRFPDQKLLPFTSEDSQVRRGGVAGTLKNCCFDAKLHEVLLDESINLLPAILLPLAGP 230 (353)
T ss_pred HHHHHHHHhh-hhhhhhHhcchhhhhHhhhhcccccchhhhccchHHHHHhhhccchhHHHHhcchHHHHHHHHhhcCCc
Confidence 6778888853 455555555544322 1222233467777764 5678999987776666555422 233322
Q ss_pred ---------------Hhh-----cCCChhHHHHHHHHHHhccCCCcchHHHHHhcCcc
Q 005044 381 ---------------KLL-----DSKNGSLQHNAAFALYGLADNEDNVADFIRVGGVQ 418 (717)
Q Consensus 381 ---------------~ll-----~~~~~~v~~~a~~~L~~l~~~~~~~~~l~~~~~i~ 418 (717)
+++ ...++.++...+.+|.-|+....+++.+++.|+.+
T Consensus 231 ee~sEEdm~~LP~eLQyLp~dKeRepdpdIrk~llEai~lLcaT~~GRe~lR~kgvYp 288 (353)
T KOG2973|consen 231 EELSEEDMAKLPVELQYLPEDKEREPDPDIRKMLLEALLLLCATRAGREVLRSKGVYP 288 (353)
T ss_pred cccCHHHHhcCCHhhhcCCccccCCCChHHHHHHHHHHHHHHhhhHhHHHHHhcCchH
Confidence 222 23467899999999999998888888888887554
No 85
>KOG0211 consensus Protein phosphatase 2A regulatory subunit A and related proteins [Signal transduction mechanisms]
Probab=98.42 E-value=1.4e-05 Score=87.27 Aligned_cols=372 Identities=16% Similarity=0.095 Sum_probs=251.8
Q ss_pred CccchHHHhHHHHHHHHhcCChhhHHHHHhCCChHHHHHHHhccccCCCccchhHHHHHHHHHHHHHhhcCchhhhHHHh
Q 005044 126 KPFEHEVEKGSAFALGLLAVKPEHQQLIVDNGALSHLVNLLKRHMDSNCSRAVNSVIRRAADAITNLAHENSSIKTRVRM 205 (717)
Q Consensus 126 ~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~i~~L~~lL~~~~~~~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~ 205 (717)
....|.++..++.-+++++..-. ......+.++.+.++..+..+ .++..|...+.++...-.... =..
T Consensus 247 ~d~~~~Vr~~~a~~l~~~a~~~~--~~~~~s~v~~~~~~L~~Ddqd--------sVr~~a~~~~~~l~~l~~~~~--d~~ 314 (759)
T KOG0211|consen 247 QDDTPMVRRAVASNLGNIAKVLE--SEIVKSEVLPTLIQLLRDDQD--------SVREAAVESLVSLLDLLDDDD--DVV 314 (759)
T ss_pred cccchhhHHHHHhhhHHHHHHHH--HHHHHhhccHHHhhhhhcchh--------hHHHHHHHHHHHHHHhcCCch--hhh
Confidence 33455788888888888872222 155667788888888888776 888888888877765222110 122
Q ss_pred cCCcHHHHHhhcCCCHHHHHHHHHHHHHhhccChhhHHHHHhcCCHHHHHHHHcCCCHHHHHHHHHHHHHhhcC-ChHHH
Q 005044 206 EGGIPPLVELLEFTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSEDSAIHYEAVGVIGNLVHS-SPNIK 284 (717)
Q Consensus 206 ~~~i~~L~~ll~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~-~~~~~ 284 (717)
..+.+.+++...++++.++.........+...-. ........++....++++...+++..++.-...++.. +....
T Consensus 315 ~~~~~~l~~~~~d~~~~v~~~~~~~~~~L~~~~~---~~~~~~~~~~~~~~l~~~~~~e~r~a~a~~~~~l~~~l~~~~~ 391 (759)
T KOG0211|consen 315 KSLTESLVQAVEDGSWRVSYMVADKFSELSSAVG---PSATRTQLVPPVSNLLKDEEWEVRYAIAKKVQKLACYLNASCY 391 (759)
T ss_pred hhhhHHHHHHhcChhHHHHHHHhhhhhhHHHHhc---cccCcccchhhHHHHhcchhhhhhHHhhcchHHHhhhcCcccc
Confidence 3467889999999999999888877777764111 1233344577788888888888888887777666543 22233
Q ss_pred HHHHHcCChHHHHHhhccCChHHHHHHHHHHHHHhcCChhhHHHHHhcCChHHHHHHhcCCCHHHHHHHHHHHHHhhcC-
Q 005044 285 KEVLAAGALQPVIGLLSSCCSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQSPDVQLREMSAFALGRLAQD- 363 (717)
Q Consensus 285 ~~~~~~g~l~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~l~~~~~l~~L~~~l~~~~~~v~~~a~~~L~~l~~~- 363 (717)
..+....+++.+..+..+.+..++...+..+..+.-..+ ..-.-....|.++..+++..+.++.+..+.+..+-..
T Consensus 392 ~~i~~~~ilp~~~~lv~d~~~~vr~a~a~~~~~~~p~~~---k~~ti~~llp~~~~~l~de~~~V~lnli~~ls~~~~v~ 468 (759)
T KOG0211|consen 392 PNIPDSSILPEVQVLVLDNALHVRSALASVITGLSPILP---KERTISELLPLLIGNLKDEDPIVRLNLIDKLSLLEEVN 468 (759)
T ss_pred cccchhhhhHHHHHHHhcccchHHHHHhccccccCccCC---cCcCccccChhhhhhcchhhHHHHHhhHHHHHHHHhcc
Confidence 445555668888889999889998888877777642222 1111244678888899999999999999887666543
Q ss_pred CCCchhhHhcCChHHHHHhhcCCChhHHHHHHHHHHhccCCCcchHHHHHhcCcccccc-chhHHhhhHHHHHHHHHHHH
Q 005044 364 MHNQAGIAHNGGLVPLLKLLDSKNGSLQHNAAFALYGLADNEDNVADFIRVGGVQKLQD-GEFIVQATKDCVAKTLKRLE 442 (717)
Q Consensus 364 ~~~~~~l~~~~~l~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~l~~~~~i~~L~~-~~~~~~~~~~~~~~~~~~l~ 442 (717)
+......+....++.+..+..+..+.++....+.+..++.... ..|.....-+.+.. ......+++..++..+..+.
T Consensus 469 ~v~g~~~~s~slLp~i~el~~d~~wRvr~ail~~ip~la~q~~--~~~~~~~~~~l~~~~l~d~v~~Ir~~aa~~l~~l~ 546 (759)
T KOG0211|consen 469 DVIGISTVSNSLLPAIVELAEDLLWRVRLAILEYIPQLALQLG--VEFFDEKLAELLRTWLPDHVYSIREAAARNLPALV 546 (759)
T ss_pred CcccchhhhhhhhhhhhhhccchhHHHHHHHHHHHHHHHHhhh--hHHhhHHHHHHHHhhhhhhHHHHHHHHHHHhHHHH
Confidence 3345567777778888888888889999999999888875322 22222211111111 12234455555554444443
Q ss_pred HH-----hhhchHHHHHHHHhhcchhHHHHHHHHHHhccCCCCCceeeecCCCHHHHHHHhcCCCchhhhhhHHHHHHhh
Q 005044 443 EK-----IHGRVLNHLLYLMRVAEKGVQRRVALALAHLCSPDDQRTIFIDGGGLELLLGLLGSTNPKQQLDGAVALFKLA 517 (717)
Q Consensus 443 ~~-----~~~~~~~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~~~~~~l~~L~~ll~~~~~~v~~~a~~~l~~L~ 517 (717)
.. .....++.++.+...++.-.|...+.++..++.--. +.+.....+|.+..+..+++++||..++..+..+.
T Consensus 547 ~~~G~~w~~~~~i~k~L~~~~q~~y~~R~t~l~si~~la~v~g--~ei~~~~Llp~~~~l~~D~vanVR~nvak~L~~i~ 624 (759)
T KOG0211|consen 547 ETFGSEWARLEEIPKLLAMDLQDNYLVRMTTLFSIHELAEVLG--QEITCEDLLPVFLDLVKDPVANVRINVAKHLPKIL 624 (759)
T ss_pred HHhCcchhHHHhhHHHHHHhcCcccchhhHHHHHHHHHHHHhc--cHHHHHHHhHHHHHhccCCchhhhhhHHHHHHHHH
Confidence 32 244578888888888788889988888886653322 12345567999999999999999999999998887
Q ss_pred hc
Q 005044 518 NK 519 (717)
Q Consensus 518 ~~ 519 (717)
+.
T Consensus 625 ~~ 626 (759)
T KOG0211|consen 625 KL 626 (759)
T ss_pred hh
Confidence 74
No 86
>KOG1242 consensus Protein containing adaptin N-terminal region [Translation, ribosomal structure and biogenesis]
Probab=98.41 E-value=7.3e-05 Score=77.52 Aligned_cols=342 Identities=16% Similarity=0.129 Sum_probs=206.7
Q ss_pred ChHHHHHhhcCCCCCccccCCCccchHHHhHHHHHHHHhc-CChhhHHHHHhCCChHHHHHHHhccccCCCccchhHHHH
Q 005044 105 AVPALVKHLQAPPTSEADRNLKPFEHEVEKGSAFALGLLA-VKPEHQQLIVDNGALSHLVNLLKRHMDSNCSRAVNSVIR 183 (717)
Q Consensus 105 ~i~~L~~lL~~~~~~~~~~~~~~~~~~v~~~a~~~L~~l~-~~~~~~~~~~~~~~i~~L~~lL~~~~~~~~~~~~~~~~~ 183 (717)
.+..++.-+..+.. .+|+....+|..+. ...... .....+.+.+++..... .-+.
T Consensus 97 ~~~~~~~~~~tps~------------~~q~~~~~~l~~~~~~~~~~~----~~~~l~~l~~ll~~~~~--------~~~~ 152 (569)
T KOG1242|consen 97 IIEILLEELDTPSK------------SVQRAVSTCLPPLVVLSKGLS----GEYVLELLLELLTSTKI--------AERA 152 (569)
T ss_pred HHHHHHHhcCCCcH------------HHHHHHHHHhhhHHHHhhccC----HHHHHHHHHHHhccccH--------HHHh
Confidence 35666666666665 89998888887776 221111 11234556666664333 5666
Q ss_pred HHHHHHHHHhhcCchhhhHHHhcCCcHHHHHhhcCCCHHHHH-HHHHHHHHhhccChhhHHHHHhcC---CHHHHHHHHc
Q 005044 184 RAADAITNLAHENSSIKTRVRMEGGIPPLVELLEFTDTKVQR-AAAGALRTLAFKNDENKNQIVECN---ALPTLILMLR 259 (717)
Q Consensus 184 ~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~-~a~~~L~~L~~~~~~~~~~~~~~g---~i~~L~~ll~ 259 (717)
.+.+.++.+..+.. ...+.+.+++..+...+.+.....++ .+..+....+..-. ...+.+ .+|.++.-+.
T Consensus 153 ~aa~~~ag~v~g~~--i~~~~~~~~l~~l~~ai~dk~~~~~re~~~~a~~~~~~~Lg----~~~EPyiv~~lp~il~~~~ 226 (569)
T KOG1242|consen 153 GAAYGLAGLVNGLG--IESLKEFGFLDNLSKAIIDKKSALNREAALLAFEAAQGNLG----PPFEPYIVPILPSILTNFG 226 (569)
T ss_pred hhhHHHHHHHcCcH--HhhhhhhhHHHHHHHHhcccchhhcHHHHHHHHHHHHHhcC----CCCCchHHhhHHHHHHHhh
Confidence 77777777775332 23455667788888888775544443 23333332222111 111223 3455555555
Q ss_pred CCCHHHHHHHHHHHHHhhcCChHHHHHHHHcCChHHHHHhhccCChHHHHHHHHHHHHHhcCChhhHHHHHhcCChHHHH
Q 005044 260 SEDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLSSCCSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLI 339 (717)
Q Consensus 260 ~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~l~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~l~~~~~l~~L~ 339 (717)
+..+.||..|..+...+...-+...- .-+++.++.-+....|..+..++..++.++...+.. .......++|.+.
T Consensus 227 d~~~~Vr~Aa~~a~kai~~~~~~~aV----K~llpsll~~l~~~kWrtK~aslellg~m~~~ap~q-Ls~~lp~iiP~ls 301 (569)
T KOG1242|consen 227 DKINKVREAAVEAAKAIMRCLSAYAV----KLLLPSLLGSLLEAKWRTKMASLELLGAMADCAPKQ-LSLCLPDLIPVLS 301 (569)
T ss_pred ccchhhhHHHHHHHHHHHHhcCcchh----hHhhhhhHHHHHHHhhhhHHHHHHHHHHHHHhchHH-HHHHHhHhhHHHH
Confidence 67788988888887776433222111 124555555555558889999999999887544443 3455578999999
Q ss_pred HHhcCCCHHHHHHHHHHHHHhhcCCCCchhhHhcCChHHHHHhhcCCChhHHHHHHHHHHhccCCCcchHHHHHhcCccc
Q 005044 340 EMLQSPDVQLREMSAFALGRLAQDMHNQAGIAHNGGLVPLLKLLDSKNGSLQHNAAFALYGLADNEDNVADFIRVGGVQK 419 (717)
Q Consensus 340 ~~l~~~~~~v~~~a~~~L~~l~~~~~~~~~l~~~~~l~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~l~~~~~i~~ 419 (717)
+.|.+..+++|.++..+|.+++.--+|.. -...++.|++.+.++...+. .+...|..=.- +..
T Consensus 302 evl~DT~~evr~a~~~~l~~~~svidN~d---I~~~ip~Lld~l~dp~~~~~-e~~~~L~~ttF-------------V~~ 364 (569)
T KOG1242|consen 302 EVLWDTKPEVRKAGIETLLKFGSVIDNPD---IQKIIPTLLDALADPSCYTP-ECLDSLGATTF-------------VAE 364 (569)
T ss_pred HHHccCCHHHHHHHHHHHHHHHHhhccHH---HHHHHHHHHHHhcCcccchH-HHHHhhcceee-------------eee
Confidence 99999999999999999999987544432 12246667777766553332 22222221110 000
Q ss_pred cccchhHHhhhHHHHHHHHHHHHHHhhhchHHHHHHHHhhcchhHHHHHHHHHHhccCCCCCceee--ecCCCHHHHHHH
Q 005044 420 LQDGEFIVQATKDCVAKTLKRLEEKIHGRVLNHLLYLMRVAEKGVQRRVALALAHLCSPDDQRTIF--IDGGGLELLLGL 497 (717)
Q Consensus 420 L~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~--~~~~~l~~L~~l 497 (717)
+.. +. -.-++|.|..-+...+..+++.++.++.|++.--+..+.+ .-...+|.|...
T Consensus 365 V~~------ps---------------LalmvpiL~R~l~eRst~~kr~t~~IidNm~~LveDp~~lapfl~~Llp~lk~~ 423 (569)
T KOG1242|consen 365 VDA------PS---------------LALMVPILKRGLAERSTSIKRKTAIIIDNMCKLVEDPKDLAPFLPSLLPGLKEN 423 (569)
T ss_pred ecc------hh---------------HHHHHHHHHHHHhhccchhhhhHHHHHHHHHHhhcCHHHHhhhHHHHhhHHHHH
Confidence 000 00 0014555556666778889999999999997654322211 112345666677
Q ss_pred hcCCCchhhhhhHHHHHHhhhc
Q 005044 498 LGSTNPKQQLDGAVALFKLANK 519 (717)
Q Consensus 498 l~~~~~~v~~~a~~~l~~L~~~ 519 (717)
+.+..|++|..++++|..+.+.
T Consensus 424 ~~d~~PEvR~vaarAL~~l~e~ 445 (569)
T KOG1242|consen 424 LDDAVPEVRAVAARALGALLER 445 (569)
T ss_pred hcCCChhHHHHHHHHHHHHHHH
Confidence 7778899999999999888775
No 87
>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]
Probab=98.41 E-value=1.1e-05 Score=87.31 Aligned_cols=227 Identities=14% Similarity=0.139 Sum_probs=182.0
Q ss_pred HHhHHHHHHHHhc-CChhhHHHHHhCCChHHHHHHHhccccCCCccchhHHHHHHHHHHHHHhhcCchhhhHHHhcCCcH
Q 005044 132 VEKGSAFALGLLA-VKPEHQQLIVDNGALSHLVNLLKRHMDSNCSRAVNSVIRRAADAITNLAHENSSIKTRVRMEGGIP 210 (717)
Q Consensus 132 v~~~a~~~L~~l~-~~~~~~~~~~~~~~i~~L~~lL~~~~~~~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~ 210 (717)
=|..|+..|+.+. .++-.....+..|+.|.++++|++... +++...+.+-..+..-++..+..+++.++-.
T Consensus 486 HRlRAL~LL~RFLDlGpWAV~LaLsVGIFPYVLKLLQS~a~--------ELrpiLVFIWAKILAvD~SCQ~dLvKe~g~~ 557 (1387)
T KOG1517|consen 486 HRLRALVLLARFLDLGPWAVDLALSVGIFPYVLKLLQSSAR--------ELRPILVFIWAKILAVDPSCQADLVKENGYK 557 (1387)
T ss_pred HHHHHHHHHHHHhccchhhhhhhhccchHHHHHHHhccchH--------hhhhhHHHHHHHHHhcCchhHHHHHhccCce
Confidence 3567888999888 677777777889999999999999877 7888777777777776888888899988888
Q ss_pred HHHHhhcC-C--CHHHHHHHHHHHHHhhccChhhHHHHHhcCCHHHHHHHHcCC-CHHHHHHHHHHHHHhhcCChHHHHH
Q 005044 211 PLVELLEF-T--DTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSE-DSAIHYEAVGVIGNLVHSSPNIKKE 286 (717)
Q Consensus 211 ~L~~ll~~-~--~~~v~~~a~~~L~~L~~~~~~~~~~~~~~g~i~~L~~ll~~~-~~~v~~~a~~~L~~l~~~~~~~~~~ 286 (717)
.+++.|.+ + +++-|..|+.+|..++.+....++...+.+++..-+..|.++ .+-.+..++-+|+.|-.+.+..+=.
T Consensus 558 YF~~vL~~~~~~~~EqrtmaAFVLAviv~nf~lGQ~acl~~~li~iCle~lnd~~~pLLrQW~~icLG~LW~d~~~Arw~ 637 (1387)
T KOG1517|consen 558 YFLQVLDPSQAIPPEQRTMAAFVLAVIVRNFKLGQKACLNGNLIGICLEHLNDDPEPLLRQWLCICLGRLWEDYDEARWS 637 (1387)
T ss_pred eEEEEecCcCCCCHHHHHHHHHHHHHHHcccchhHHHhccccHHHHHHHHhcCCccHHHHHHHHHHHHHHhhhcchhhhc
Confidence 88888866 2 368899999999999988777788888889999888999885 6888999999999998887776656
Q ss_pred HHHcCChHHHHHhhccCChHHHHHHHHHHHHHhcCC----hhhHHHH------------HhcCCh---HHHHHHhcCCCH
Q 005044 287 VLAAGALQPVIGLLSSCCSESQREAALLLGQFAATD----SDCKVHI------------VQRGAV---RPLIEMLQSPDV 347 (717)
Q Consensus 287 ~~~~g~l~~L~~ll~~~~~~~~~~a~~~L~~l~~~~----~~~~~~l------------~~~~~l---~~L~~~l~~~~~ 347 (717)
-.+.++...|..+|.++-++||..|..+|+.+.+.. ++....+ ++.-+. ..++.++++..+
T Consensus 638 G~r~~AhekL~~~LsD~vpEVRaAAVFALgtfl~~~~d~fde~~~~~~~~~~l~~~~~~~E~~i~~~~~~ll~~vsdgsp 717 (1387)
T KOG1517|consen 638 GRRDNAHEKLILLLSDPVPEVRAAAVFALGTFLSNGSDNFDEQTLVVEEEIDLDDERTSIEDLIIKGLMSLLALVSDGSP 717 (1387)
T ss_pred cccccHHHHHHHHhcCccHHHHHHHHHHHHHHhcccccccchhhhhhhhhhcchhhhhhHHHHHHhhHHHHHHHHhccch
Confidence 667788999999999999999999999999987642 1111111 111122 267777788899
Q ss_pred HHHHHHHHHHHHhhcCCCC
Q 005044 348 QLREMSAFALGRLAQDMHN 366 (717)
Q Consensus 348 ~v~~~a~~~L~~l~~~~~~ 366 (717)
-++.+.+-+|..+..+...
T Consensus 718 lvr~ev~v~ls~~~~g~~~ 736 (1387)
T KOG1517|consen 718 LVRTEVVVALSHFVVGYVS 736 (1387)
T ss_pred HHHHHHHHHHHHHHHhhHH
Confidence 9999988899988865443
No 88
>KOG1060 consensus Vesicle coat complex AP-3, beta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.38 E-value=0.00017 Score=76.34 Aligned_cols=361 Identities=16% Similarity=0.136 Sum_probs=224.8
Q ss_pred HHHHHhhcCCCCCccccCCCccchHHHhHHH-HHHHHhcCChhhHHHHHhCCChHHHHHHHhccccCCCccchhHHHHHH
Q 005044 107 PALVKHLQAPPTSEADRNLKPFEHEVEKGSA-FALGLLAVKPEHQQLIVDNGALSHLVNLLKRHMDSNCSRAVNSVIRRA 185 (717)
Q Consensus 107 ~~L~~lL~~~~~~~~~~~~~~~~~~v~~~a~-~~L~~l~~~~~~~~~~~~~~~i~~L~~lL~~~~~~~~~~~~~~~~~~a 185 (717)
.-|.++|++... ..+..|+ ++++-++.+.+.. ..++.+++.....+. ++++..
T Consensus 38 ~dL~~lLdSnkd------------~~KleAmKRIia~iA~G~dvS------~~Fp~VVKNVaskn~--------EVKkLV 91 (968)
T KOG1060|consen 38 DDLKQLLDSNKD------------SLKLEAMKRIIALIAKGKDVS------LLFPAVVKNVASKNI--------EVKKLV 91 (968)
T ss_pred HHHHHHHhcccc------------HHHHHHHHHHHHHHhcCCcHH------HHHHHHHHHhhccCH--------HHHHHH
Confidence 457778877655 4444454 4555555544432 346778888877766 888877
Q ss_pred HHHHHHHhhcCchhhhHHHhcCCcHHHHHhhcCCCHHHHHHHHHHHHHhhccChhhHHHHHhcCCHHHHHHHHcCCCHHH
Q 005044 186 ADAITNLAHENSSIKTRVRMEGGIPPLVELLEFTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSEDSAI 265 (717)
Q Consensus 186 ~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~v 265 (717)
---|...+...+...- =.|..+-+-|+++++.+|..|+++|..+=. +-.... ++-.+-++..+..+-|
T Consensus 92 yvYLlrYAEeqpdLAL-----LSIntfQk~L~DpN~LiRasALRvlSsIRv--p~IaPI-----~llAIk~~~~D~s~yV 159 (968)
T KOG1060|consen 92 YVYLLRYAEEQPDLAL-----LSINTFQKALKDPNQLIRASALRVLSSIRV--PMIAPI-----MLLAIKKAVTDPSPYV 159 (968)
T ss_pred HHHHHHHhhcCCCcee-----eeHHHHHhhhcCCcHHHHHHHHHHHHhcch--hhHHHH-----HHHHHHHHhcCCcHHH
Confidence 6666666665554321 146788889999999999988888877642 111111 1223445667889999
Q ss_pred HHHHHHHHHHhhcCChHHHHHHHHcCChHHHHHhhccCChHHHHHHHHHHHHHhcCChhhHHHHHhcCChHHHHHHhcCC
Q 005044 266 HYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLSSCCSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQSP 345 (717)
Q Consensus 266 ~~~a~~~L~~l~~~~~~~~~~~~~~g~l~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~l~~~~~l~~L~~~l~~~ 345 (717)
|..|+.+|-.+-.-.++.... ++..+-.+|.+.++-|.-.|+.+...+| ++....+ ++-...|++++.+-
T Consensus 160 Rk~AA~AIpKLYsLd~e~k~q-----L~e~I~~LLaD~splVvgsAv~AF~evC---PerldLI--HknyrklC~ll~dv 229 (968)
T KOG1060|consen 160 RKTAAHAIPKLYSLDPEQKDQ-----LEEVIKKLLADRSPLVVGSAVMAFEEVC---PERLDLI--HKNYRKLCRLLPDV 229 (968)
T ss_pred HHHHHHhhHHHhcCChhhHHH-----HHHHHHHHhcCCCCcchhHHHHHHHHhc---hhHHHHh--hHHHHHHHhhccch
Confidence 999999999986655555433 4567778889999999999999999887 4443333 33467788888775
Q ss_pred CHHHHHHHHHHHHHhhcCCCCch-------------------------hhHhcCChHHHH----HhhcCCChhHHHHHHH
Q 005044 346 DVQLREMSAFALGRLAQDMHNQA-------------------------GIAHNGGLVPLL----KLLDSKNGSLQHNAAF 396 (717)
Q Consensus 346 ~~~v~~~a~~~L~~l~~~~~~~~-------------------------~l~~~~~l~~L~----~ll~~~~~~v~~~a~~ 396 (717)
+.--+...+.+|..-|+..-... -.+...-+..|+ .++.+.++.|...++.
T Consensus 230 deWgQvvlI~mL~RYAR~~l~~P~~~~~~~e~n~~~~~~~~~~~~~~~P~~~d~D~~lLL~stkpLl~S~n~sVVmA~aq 309 (968)
T KOG1060|consen 230 DEWGQVVLINMLTRYARHQLPDPTVVDSSLEDNGRSCNLKDKYNEIRTPYVNDPDLKLLLQSTKPLLQSRNPSVVMAVAQ 309 (968)
T ss_pred hhhhHHHHHHHHHHHHHhcCCCccccccccccCcccccccccccccCCCcccCccHHHHHHhccHHHhcCCcHHHHHHHh
Confidence 55555566666666664211100 011111122333 3557889999999999
Q ss_pred HHHhccCCCcchHHHHH--------hcCccccc-c----------chhH----------HhhhHHHHH--HHHHHHHH-H
Q 005044 397 ALYGLADNEDNVADFIR--------VGGVQKLQ-D----------GEFI----------VQATKDCVA--KTLKRLEE-K 444 (717)
Q Consensus 397 ~L~~l~~~~~~~~~l~~--------~~~i~~L~-~----------~~~~----------~~~~~~~~~--~~~~~l~~-~ 444 (717)
+...++...+. ..+.+ ...++..+ + ..|. ..+...++. .++.++.. .
T Consensus 310 l~y~lAP~~~~-~~i~kaLvrLLrs~~~vqyvvL~nIa~~s~~~~~lF~P~lKsFfv~ssDp~~vk~lKleiLs~La~es 388 (968)
T KOG1060|consen 310 LFYHLAPKNQV-TKIAKALVRLLRSNREVQYVVLQNIATISIKRPTLFEPHLKSFFVRSSDPTQVKILKLEILSNLANES 388 (968)
T ss_pred HHHhhCCHHHH-HHHHHHHHHHHhcCCcchhhhHHHHHHHHhcchhhhhhhhhceEeecCCHHHHHHHHHHHHHHHhhhc
Confidence 99999853211 11111 11111110 0 0000 001111111 12222211 1
Q ss_pred hhhchHHHHHHHHhhcchhHHHHHHHHHHhccCCCCCceeeecCCCHHHHHHHhcCCCchhhhhhHHHHHHhhhcc
Q 005044 445 IHGRVLNHLLYLMRVAEKGVQRRVALALAHLCSPDDQRTIFIDGGGLELLLGLLGSTNPKQQLDGAVALFKLANKA 520 (717)
Q Consensus 445 ~~~~~~~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~~~~~~l~~L~~ll~~~~~~v~~~a~~~l~~L~~~~ 520 (717)
.-+.+++.+....++.+..+...++.+|+..+..... +....+.-|+.++++.+..|..+++..+..|.+..
T Consensus 389 ni~~ILrE~q~YI~s~d~~faa~aV~AiGrCA~~~~s----v~~tCL~gLv~Llsshde~Vv~eaV~vIk~Llq~~ 460 (968)
T KOG1060|consen 389 NISEILRELQTYIKSSDRSFAAAAVKAIGRCASRIGS----VTDTCLNGLVQLLSSHDELVVAEAVVVIKRLLQKD 460 (968)
T ss_pred cHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHhhCc----hhhHHHHHHHHHHhcccchhHHHHHHHHHHHHhhC
Confidence 2345777888888888888888899999988765331 23457889999999999999999999999998753
No 89
>KOG1062 consensus Vesicle coat complex AP-1, gamma subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.36 E-value=0.0017 Score=69.37 Aligned_cols=310 Identities=15% Similarity=0.151 Sum_probs=186.3
Q ss_pred HHHhHHHHHHHHhcCChhhHHHHHhCCChHHHHHHHhccccCCCccchhHHHHHHHHHHHHHhhcCchhhhHHHhcCCcH
Q 005044 131 EVEKGSAFALGLLAVKPEHQQLIVDNGALSHLVNLLKRHMDSNCSRAVNSVIRRAADAITNLAHENSSIKTRVRMEGGIP 210 (717)
Q Consensus 131 ~v~~~a~~~L~~l~~~~~~~~~~~~~~~i~~L~~lL~~~~~~~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~ 210 (717)
-++..|+.+|++++..+-.| ...|.+.++++..++ .++..|+.+...+....|+.-.. +++
T Consensus 122 ~vVglAL~alg~i~s~Emar------dlapeVe~Ll~~~~~--------~irKKA~Lca~r~irK~P~l~e~-----f~~ 182 (866)
T KOG1062|consen 122 YVVGLALCALGNICSPEMAR------DLAPEVERLLQHRDP--------YIRKKAALCAVRFIRKVPDLVEH-----FVI 182 (866)
T ss_pred eehHHHHHHhhccCCHHHhH------HhhHHHHHHHhCCCH--------HHHHHHHHHHHHHHHcCchHHHH-----hhH
Confidence 67788888998888554444 335777788888666 88899998888888877765443 456
Q ss_pred HHHHhhcCCCHHHHHHHHHHHHHhhccChhhHHHHHhcCCHHHHHHHHcC---------------CCHHHHHHHHHHHHH
Q 005044 211 PLVELLEFTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRS---------------EDSAIHYEAVGVIGN 275 (717)
Q Consensus 211 ~L~~ll~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~g~i~~L~~ll~~---------------~~~~v~~~a~~~L~~ 275 (717)
....+|.+.+..|...++..+..+|..+++....+.+ .++-|+..|+. ++|=++...++.|+-
T Consensus 183 ~~~~lL~ek~hGVL~~~l~l~~e~c~~~~~~l~~fr~--l~~~lV~iLk~l~~~~yspeydv~gi~dPFLQi~iLrlLri 260 (866)
T KOG1062|consen 183 AFRKLLCEKHHGVLIAGLHLITELCKISPDALSYFRD--LVPSLVKILKQLTNSGYSPEYDVHGISDPFLQIRILRLLRI 260 (866)
T ss_pred HHHHHHhhcCCceeeeHHHHHHHHHhcCHHHHHHHHH--HHHHHHHHHHHHhcCCCCCccCccCCCchHHHHHHHHHHHH
Confidence 7777887888888888888888888766666555554 55666665541 356677777777777
Q ss_pred hhcCChHHHHHHHHcCChHHHHHhhccCC------hHHHHHHHHHHHHHhcCChhhHHHHHhcCChHHHHHHhcCCCHHH
Q 005044 276 LVHSSPNIKKEVLAAGALQPVIGLLSSCC------SESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQSPDVQL 349 (717)
Q Consensus 276 l~~~~~~~~~~~~~~g~l~~L~~ll~~~~------~~~~~~a~~~L~~l~~~~~~~~~~l~~~~~l~~L~~~l~~~~~~v 349 (717)
+-.++++....+. +.|-+.....+ ..+..++..++..+-. +...+ +. ++..|-++|.+.+..+
T Consensus 261 LGq~d~daSd~M~-----DiLaqvatntdsskN~GnAILYE~V~TI~~I~~-~~~Lr--vl---ainiLgkFL~n~d~Ni 329 (866)
T KOG1062|consen 261 LGQNDADASDLMN-----DILAQVATNTDSSKNAGNAILYECVRTIMDIRS-NSGLR--VL---AINILGKFLLNRDNNI 329 (866)
T ss_pred hcCCCccHHHHHH-----HHHHHHHhcccccccchhHHHHHHHHHHHhccC-CchHH--HH---HHHHHHHHhcCCccce
Confidence 7665544433322 12223322211 1233334444433311 11111 11 2333444444444455
Q ss_pred HHHHHHHHHHhhcCCCCchhhHhcCChHHHHHhhcCCChhHHHHHHHHHHhccCCCcchHHHHHhcCccccccchhHHhh
Q 005044 350 REMSAFALGRLAQDMHNQAGIAHNGGLVPLLKLLDSKNGSLQHNAAFALYGLADNEDNVADFIRVGGVQKLQDGEFIVQA 429 (717)
Q Consensus 350 ~~~a~~~L~~l~~~~~~~~~l~~~~~l~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~l~~~~~i~~L~~~~~~~~~ 429 (717)
|.-|+.+|......++... +.. -..+++.+++.|..+++.|+..+..|.... |...
T Consensus 330 rYvaLn~L~r~V~~d~~av---qrH-r~tIleCL~DpD~SIkrralELs~~lvn~~-Nv~~------------------- 385 (866)
T KOG1062|consen 330 RYVALNMLLRVVQQDPTAV---QRH-RSTILECLKDPDVSIKRRALELSYALVNES-NVRV------------------- 385 (866)
T ss_pred eeeehhhHHhhhcCCcHHH---HHH-HHHHHHHhcCCcHHHHHHHHHHHHHHhccc-cHHH-------------------
Confidence 5555555544443322211 000 123667778888888888888777776432 3222
Q ss_pred hHHHHHHHHHHHHHHhhhchHHHHHHHHhhcchhHHHHHHHHHHhccCCCCCceeeecCCCHHHHHHHhcCCCchhhhhh
Q 005044 430 TKDCVAKTLKRLEEKIHGRVLNHLLYLMRVAEKGVQRRVALALAHLCSPDDQRTIFIDGGGLELLLGLLGSTNPKQQLDG 509 (717)
Q Consensus 430 ~~~~~~~~~~~l~~~~~~~~~~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~~~~~~l~~L~~ll~~~~~~v~~~a 509 (717)
++..|+.+|...+++.+..++.-+..++..-.- -+.-.+..+.+.+.....-|+..+
T Consensus 386 -------------------mv~eLl~fL~~~d~~~k~~~as~I~~laEkfaP----~k~W~idtml~Vl~~aG~~V~~dv 442 (866)
T KOG1062|consen 386 -------------------MVKELLEFLESSDEDFKADIASKIAELAEKFAP----DKRWHIDTMLKVLKTAGDFVNDDV 442 (866)
T ss_pred -------------------HHHHHHHHHHhccHHHHHHHHHHHHHHHHhcCC----cchhHHHHHHHHHHhcccccchhh
Confidence 556688899988999999888888888654221 122346667777776666667677
Q ss_pred HHHHHHhhhc
Q 005044 510 AVALFKLANK 519 (717)
Q Consensus 510 ~~~l~~L~~~ 519 (717)
...+..|..+
T Consensus 443 ~~nll~LIa~ 452 (866)
T KOG1062|consen 443 VNNLLRLIAN 452 (866)
T ss_pred HHHHHHHHhc
Confidence 7766666654
No 90
>PF14664 RICTOR_N: Rapamycin-insensitive companion of mTOR, N-term
Probab=98.35 E-value=0.00038 Score=70.92 Aligned_cols=316 Identities=14% Similarity=0.112 Sum_probs=197.5
Q ss_pred CChhhHHHHHhCCChHHHHHHHhccccCCCccchhHHHHHHHHHHHHHhhcCchhhhHHHhcCCcHHHHHhhcC--CCHH
Q 005044 145 VKPEHQQLIVDNGALSHLVNLLKRHMDSNCSRAVNSVIRRAADAITNLAHENSSIKTRVRMEGGIPPLVELLEF--TDTK 222 (717)
Q Consensus 145 ~~~~~~~~~~~~~~i~~L~~lL~~~~~~~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~--~~~~ 222 (717)
..|+.+..+.-....+.+..++-+++. +++..+.++++.+..+. ..-..+.+.+.--.++.-|.. .+..
T Consensus 13 ~~p~l~~~~~~~~~~~~i~~~lL~~~~--------~vraa~yRilRy~i~d~-~~l~~~~~l~id~~ii~SL~~~~~~~~ 83 (371)
T PF14664_consen 13 RHPTLKYDLVLSFFGERIQCMLLSDSK--------EVRAAGYRILRYLISDE-ESLQILLKLHIDIFIIRSLDRDNKNDV 83 (371)
T ss_pred hCchhhhhhhHHHHHHHHHHHHCCCcH--------HHHHHHHHHHHHHHcCH-HHHHHHHHcCCchhhHhhhcccCCChH
Confidence 444444444433444555543333334 99999999999998844 444455665654445555533 3466
Q ss_pred HHHHHHHHHHHhhccChhhHHHHHhcCCHHHHHHHHcCCCHHHHHHHHHHHHHhhcCChHHHHHHHHcCChHHHHHhhcc
Q 005044 223 VQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSEDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLSS 302 (717)
Q Consensus 223 v~~~a~~~L~~L~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~l~~L~~ll~~ 302 (717)
-|+.|++.++.+..-. ..... ...|++..++.+..+.++..+..|+.+|..++..++ +.+...||+..|.+.+.+
T Consensus 84 ER~QALkliR~~l~~~-~~~~~-~~~~vvralvaiae~~~D~lr~~cletL~El~l~~P---~lv~~~gG~~~L~~~l~d 158 (371)
T PF14664_consen 84 EREQALKLIRAFLEIK-KGPKE-IPRGVVRALVAIAEHEDDRLRRICLETLCELALLNP---ELVAECGGIRVLLRALID 158 (371)
T ss_pred HHHHHHHHHHHHHHhc-CCccc-CCHHHHHHHHHHHhCCchHHHHHHHHHHHHHHhhCH---HHHHHcCCHHHHHHHHHh
Confidence 7889999999988632 22211 245788899999999999999999999999998877 557789999999999998
Q ss_pred CChHHHHHHHHHHHHHhcCChhhHHHHHhcCChHHHHHHhcCC-------CH--HHHHHHHHHHHHhhcCCCCchhhHhc
Q 005044 303 CCSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQSP-------DV--QLREMSAFALGRLAQDMHNQAGIAHN 373 (717)
Q Consensus 303 ~~~~~~~~a~~~L~~l~~~~~~~~~~l~~~~~l~~L~~~l~~~-------~~--~v~~~a~~~L~~l~~~~~~~~~l~~~ 373 (717)
+..++....+.++..+. +.|..+..+...--+..++.-..+. +. +.-..+..++..+.++=.+--.+...
T Consensus 159 ~~~~~~~~l~~~lL~lL-d~p~tR~yl~~~~dL~~l~apftd~~~~~~~~~~~~~~l~~s~~ai~~~LrsW~GLl~l~~~ 237 (371)
T PF14664_consen 159 GSFSISESLLDTLLYLL-DSPRTRKYLRPGFDLESLLAPFTDFHYRKIKDDRELERLQASAKAISTLLRSWPGLLYLSMN 237 (371)
T ss_pred ccHhHHHHHHHHHHHHh-CCcchhhhhcCCccHHHHHHhhhhhhccccccchHHHHHHHHHHHHHHHHhcCCceeeeecC
Confidence 76678888888888885 5566666554433444444444322 22 23345555666666543332222222
Q ss_pred --CChHHHHHhhcCCChhHHHHHHHHHHhccCC--CcchHHHHHh------cCccccccch--hH-----Hhh---hHHH
Q 005044 374 --GGLVPLLKLLDSKNGSLQHNAAFALYGLADN--EDNVADFIRV------GGVQKLQDGE--FI-----VQA---TKDC 433 (717)
Q Consensus 374 --~~l~~L~~ll~~~~~~v~~~a~~~L~~l~~~--~~~~~~l~~~------~~i~~L~~~~--~~-----~~~---~~~~ 433 (717)
.++..|+..|..++++++......+..+.+- +.....+... |-...-.+.. +. ... ....
T Consensus 238 ~~~~lksLv~~L~~p~~~ir~~Ildll~dllrik~p~w~~~~~~~~~~~~~~~~~~~~~l~~~~~e~~~~~~~~~~~~~~ 317 (371)
T PF14664_consen 238 DFRGLKSLVDSLRLPNPEIRKAILDLLFDLLRIKPPSWTESFLAGRRLTTYGRFQDTWNLSSGFAEAKSILPHRSSKRPN 317 (371)
T ss_pred CchHHHHHHHHHcCCCHHHHHHHHHHHHHHHCCCCCCcccchhhcccccccccccchhhhcccccccccccCcccccccc
Confidence 5788899999999999999999999988652 2212221111 1110000000 00 000 0001
Q ss_pred HHHHH--HHHHHHhhhchHHHHHHHHhhc-chhHHHHHHHHHHhc
Q 005044 434 VAKTL--KRLEEKIHGRVLNHLLYLMRVA-EKGVQRRVALALAHL 475 (717)
Q Consensus 434 ~~~~~--~~l~~~~~~~~~~~L~~ll~~~-~~~v~~~a~~aL~~l 475 (717)
+.+.- --+...++.|+++.|+.+..+. ++.+...|...|+.+
T Consensus 318 l~~~y~aLll~ili~~gL~~~L~~li~~~~d~~l~~KAtlLL~el 362 (371)
T PF14664_consen 318 LVNHYLALLLAILIEAGLLEALVELIESSEDSSLSRKATLLLGEL 362 (371)
T ss_pred HHHHHHHHHHHHHHHcChHHHHHHHHhcCCCchHHHHHHHHHHHH
Confidence 11110 1112335889999999999987 888888888888765
No 91
>KOG0213 consensus Splicing factor 3b, subunit 1 [RNA processing and modification]
Probab=98.35 E-value=1.3e-05 Score=83.52 Aligned_cols=259 Identities=16% Similarity=0.145 Sum_probs=162.8
Q ss_pred HHHHHhhcCCCCCccccCCCccchHHHhHHHHHHHHhcCC-hhhH--HHHHhCCChHHHHHHHhccccCCCccchhHHHH
Q 005044 107 PALVKHLQAPPTSEADRNLKPFEHEVEKGSAFALGLLAVK-PEHQ--QLIVDNGALSHLVNLLKRHMDSNCSRAVNSVIR 183 (717)
Q Consensus 107 ~~L~~lL~~~~~~~~~~~~~~~~~~v~~~a~~~L~~l~~~-~~~~--~~~~~~~~i~~L~~lL~~~~~~~~~~~~~~~~~ 183 (717)
...+..|++.+. .+|.+|+..++.++-- ..+. +.+...| -.|.+.|....+ ++.-
T Consensus 802 stiL~rLnnksa------------~vRqqaadlis~la~Vlktc~ee~~m~~lG--vvLyEylgeeyp--------EvLg 859 (1172)
T KOG0213|consen 802 STILWRLNNKSA------------KVRQQAADLISSLAKVLKTCGEEKLMGHLG--VVLYEYLGEEYP--------EVLG 859 (1172)
T ss_pred HHHHHHhcCCCh------------hHHHHHHHHHHHHHHHHHhccHHHHHHHhh--HHHHHhcCcccH--------HHHH
Confidence 344556677666 9999999999999811 1111 1222222 235566666555 6666
Q ss_pred HHHHHHHHHhhcCchhhhHHHhcCCcHHHHHhhcCCCHHHHHHHHHHHHHhhccChhh---HHHHHhcCCHHHHHHHHcC
Q 005044 184 RAADAITNLAHENSSIKTRVRMEGGIPPLVELLEFTDTKVQRAAAGALRTLAFKNDEN---KNQIVECNALPTLILMLRS 260 (717)
Q Consensus 184 ~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~L~~~~~~~---~~~~~~~g~i~~L~~ll~~ 260 (717)
..+.++..++....-.+..--..+.+|.|..+|++....++..+...+..++...++. ++-+. +.=-|+.+|++
T Consensus 860 sILgAikaI~nvigm~km~pPi~dllPrltPILknrheKVqen~IdLvg~IadrgpE~v~aREWMR---IcfeLlelLka 936 (1172)
T KOG0213|consen 860 SILGAIKAIVNVIGMTKMTPPIKDLLPRLTPILKNRHEKVQENCIDLVGTIADRGPEYVSAREWMR---ICFELLELLKA 936 (1172)
T ss_pred HHHHHHHHHHHhccccccCCChhhhcccchHhhhhhHHHHHHHHHHHHHHHHhcCcccCCHHHHHH---HHHHHHHHHHH
Confidence 6666666555422111111112468899999999999999999999999999755543 11111 23347788889
Q ss_pred CCHHHHHHHHHHHHHhhcCChHHHHHHHHcCChHHHHHhhccCChHHHHHHHHHHHHHhcCChhhHHHHHhcCChHHHHH
Q 005044 261 EDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLSSCCSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIE 340 (717)
Q Consensus 261 ~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~l~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~l~~~~~l~~L~~ 340 (717)
.+.++|+.|..+++.++.. +--..++..|+.-|+..+-..|.....+++-.+..+.. ..++|.|++
T Consensus 937 hkK~iRRaa~nTfG~Iaka-------IGPqdVLatLlnnLkvqeRq~RvcTtvaIaIVaE~c~p-------FtVLPalmn 1002 (1172)
T KOG0213|consen 937 HKKEIRRAAVNTFGYIAKA-------IGPQDVLATLLNNLKVQERQNRVCTTVAIAIVAETCGP-------FTVLPALMN 1002 (1172)
T ss_pred HHHHHHHHHHhhhhHHHHh-------cCHHHHHHHHHhcchHHHHHhchhhhhhhhhhhhhcCc-------hhhhHHHHh
Confidence 9999999999999998642 11122344555555443333333333333333321111 125677776
Q ss_pred HhcCCCHHHHHHHHHHHHHhhcCCCC--chhhHhcCChHHHHHhhcCCChhHHHHHHHHHHhccCCCc
Q 005044 341 MLQSPDVQLREMSAFALGRLAQDMHN--QAGIAHNGGLVPLLKLLDSKNGSLQHNAAFALYGLADNED 406 (717)
Q Consensus 341 ~l~~~~~~v~~~a~~~L~~l~~~~~~--~~~l~~~~~l~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~ 406 (717)
=-..++..|+.-.+.+|+.+-..-.. +..+ ....|.|.+.|.+.+...+..|..++..|+.+..
T Consensus 1003 eYrtPe~nVQnGVLkalsf~FeyigemskdYi--yav~PlleDAlmDrD~vhRqta~~~I~Hl~Lg~~ 1068 (1172)
T KOG0213|consen 1003 EYRTPEANVQNGVLKALSFMFEYIGEMSKDYI--YAVTPLLEDALMDRDLVHRQTAMNVIKHLALGVP 1068 (1172)
T ss_pred hccCchhHHHHhHHHHHHHHHHHHHHHhhhHH--HHhhHHHHHhhccccHHHHHHHHHHHHHHhcCCC
Confidence 66778888988888888877653222 2222 2345667788899999999999999999988643
No 92
>KOG2734 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.34 E-value=4.4e-05 Score=75.23 Aligned_cols=235 Identities=18% Similarity=0.207 Sum_probs=178.0
Q ss_pred HHHHhhccChhhHHHHHhcCCHHHHHHHHcCCCHHHHHHHHHHHHHhhcCC---------hHHHHHHHHcCChHHHHHhh
Q 005044 230 ALRTLAFKNDENKNQIVECNALPTLILMLRSEDSAIHYEAVGVIGNLVHSS---------PNIKKEVLAAGALQPVIGLL 300 (717)
Q Consensus 230 ~L~~L~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~---------~~~~~~~~~~g~l~~L~~ll 300 (717)
-+..++. -|+....+++.++++.|+.+|.+++.++....+..+..++..+ .....++++.++++.|++-+
T Consensus 107 ~mhvlAt-~PdLYp~lveln~V~slL~LLgHeNtDI~iavvdLLqELTD~Dv~~es~egAevLidaLvdg~vlaLLvqnv 185 (536)
T KOG2734|consen 107 EMHVLAT-MPDLYPILVELNAVQSLLELLGHENTDIAIAVVDLLQELTDEDVLYESEEGAEVLIDALVDGQVLALLVQNV 185 (536)
T ss_pred HHHhhhc-ChHHHHHHHHhccHHHHHHHhcCCCchhHHHHHHHHHHhhhhcccccccccHHHHHHHHHhccHHHHHHHHH
Confidence 3444554 6888888999999999999999999999999999999986421 13456777888999999988
Q ss_pred ccCChHH------HHHHHHHHHHHhcCChhhHHHHHhcCChHHHHHHhcC--CCHHHHHHHHHHHHHhhcCCC-CchhhH
Q 005044 301 SSCCSES------QREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQS--PDVQLREMSAFALGRLAQDMH-NQAGIA 371 (717)
Q Consensus 301 ~~~~~~~------~~~a~~~L~~l~~~~~~~~~~l~~~~~l~~L~~~l~~--~~~~v~~~a~~~L~~l~~~~~-~~~~l~ 371 (717)
..-+..+ ...+...+.|+....+.....+.+.|.+.+|+.-+.. .-..-...|...|.-+..++. ++..+.
T Consensus 186 eRLdEsvkeea~gv~~~L~vveNlv~~r~~~~~~~~e~~ll~WLL~rl~~k~~f~aNk~YasEiLaillq~s~e~~~~~~ 265 (536)
T KOG2734|consen 186 ERLDESVKEEADGVHNTLAVVENLVEVRPAICTEIVEQGLLSWLLKRLKGKAAFDANKQYASEILAILLQNSDENRKLLG 265 (536)
T ss_pred HHhhhcchhhhhhhHHHHHHHHHHHhccHHHHHHHHHhhHHHHHHHHHhcccCcchhHHHHHHHHHHHhccCchhhhhhc
Confidence 7644433 3456678889888888888889999999999986643 334456677888888777554 667777
Q ss_pred hcCChHHHHHhh-----cC----CChhHHHHHHHHHHhccCCCcchHHHHHhcCccccccchhHHhhhHHHHHHHHHHHH
Q 005044 372 HNGGLVPLLKLL-----DS----KNGSLQHNAAFALYGLADNEDNVADFIRVGGVQKLQDGEFIVQATKDCVAKTLKRLE 442 (717)
Q Consensus 372 ~~~~l~~L~~ll-----~~----~~~~v~~~a~~~L~~l~~~~~~~~~l~~~~~i~~L~~~~~~~~~~~~~~~~~~~~l~ 442 (717)
.-.|+..+++-+ ++ ...+..++....|+.+...+.++..|....+++
T Consensus 266 ~l~GiD~lL~~la~yk~~dP~~~~E~EmmeNLFdcLCs~lm~~~nr~~Fl~~EGlq------------------------ 321 (536)
T KOG2734|consen 266 PLDGIDVLLRQLAVYKRHDPATVDEEEMMENLFDCLCSLLMAPANRERFLKGEGLQ------------------------ 321 (536)
T ss_pred CcccHHHHHhhcchhhccCCCCcCHHHHHHHHHHHHHHHhcChhhhhhhhccccHH------------------------
Confidence 778999888766 11 134677888889999988999999999887665
Q ss_pred HHhhhchHHHHHHHHhhcchhHHHHHHHHHHhccCCCC---CceeeecCCCHHHHHHHhc
Q 005044 443 EKIHGRVLNHLLYLMRVAEKGVQRRVALALAHLCSPDD---QRTIFIDGGGLELLLGLLG 499 (717)
Q Consensus 443 ~~~~~~~~~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~---~~~~~~~~~~l~~L~~ll~ 499 (717)
|..++-......+..++.+|.++..+++ ++..+++..|+..+..+.-
T Consensus 322 ----------Lm~Lmlr~Kk~sr~SalkvLd~am~g~~gt~~C~kfVe~lGLrtiF~~FM 371 (536)
T KOG2734|consen 322 ----------LMNLMLREKKVSRGSALKVLDHAMFGPEGTPNCNKFVEILGLRTIFPLFM 371 (536)
T ss_pred ----------HHHHHHHHHHHhhhhHHHHHHHHHhCCCchHHHHHHHHHHhHHHHHHHHh
Confidence 4455544456667788899998877765 5666778888888776654
No 93
>PF14664 RICTOR_N: Rapamycin-insensitive companion of mTOR, N-term
Probab=98.32 E-value=0.00015 Score=73.88 Aligned_cols=187 Identities=14% Similarity=0.139 Sum_probs=136.6
Q ss_pred HHhhcCchhhhHHHhcCCcHHHHHhhcCCCHHHHHHHHHHHHHhhccChhhHHHHHhcCCHHHHHHHHcCC--CHHHHHH
Q 005044 191 NLAHENSSIKTRVRMEGGIPPLVELLEFTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSE--DSAIHYE 268 (717)
Q Consensus 191 ~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~g~i~~L~~ll~~~--~~~v~~~ 268 (717)
.+...++..+..+.-....+.+..++-+++.++|..+.++++.+.. +......+.+.++--.++.-|..+ +..-|.+
T Consensus 9 ~l~~~~p~l~~~~~~~~~~~~i~~~lL~~~~~vraa~yRilRy~i~-d~~~l~~~~~l~id~~ii~SL~~~~~~~~ER~Q 87 (371)
T PF14664_consen 9 DLLKRHPTLKYDLVLSFFGERIQCMLLSDSKEVRAAGYRILRYLIS-DEESLQILLKLHIDIFIIRSLDRDNKNDVEREQ 87 (371)
T ss_pred HHHHhCchhhhhhhHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHHc-CHHHHHHHHHcCCchhhHhhhcccCCChHHHHH
Confidence 3334455454444444444555544545559999999999999997 677778888877666666666543 4456889
Q ss_pred HHHHHHHhhcCChHHHHHHHHcCChHHHHHhhccCChHHHHHHHHHHHHHhcCChhhHHHHHhcCChHHHHHHhcCCCHH
Q 005044 269 AVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLSSCCSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQSPDVQ 348 (717)
Q Consensus 269 a~~~L~~l~~~~~~~~~~~~~~g~l~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~l~~~~~l~~L~~~l~~~~~~ 348 (717)
|+..+..+..-... ...+..|++..++.+..+.+...+..|..+|+.++-.+|+. +...|++..|++.+.++..+
T Consensus 88 ALkliR~~l~~~~~--~~~~~~~vvralvaiae~~~D~lr~~cletL~El~l~~P~l---v~~~gG~~~L~~~l~d~~~~ 162 (371)
T PF14664_consen 88 ALKLIRAFLEIKKG--PKEIPRGVVRALVAIAEHEDDRLRRICLETLCELALLNPEL---VAECGGIRVLLRALIDGSFS 162 (371)
T ss_pred HHHHHHHHHHhcCC--cccCCHHHHHHHHHHHhCCchHHHHHHHHHHHHHHhhCHHH---HHHcCCHHHHHHHHHhccHh
Confidence 99999888654221 11234567888999999998999999999999998766664 67899999999999887777
Q ss_pred HHHHHHHHHHHhhcCCCCchhhHhcCChHHHHHhh
Q 005044 349 LREMSAFALGRLAQDMHNQAGIAHNGGLVPLLKLL 383 (717)
Q Consensus 349 v~~~a~~~L~~l~~~~~~~~~l~~~~~l~~L~~ll 383 (717)
+.+..+.++..+...+..+..+...--+..++.-+
T Consensus 163 ~~~~l~~~lL~lLd~p~tR~yl~~~~dL~~l~apf 197 (371)
T PF14664_consen 163 ISESLLDTLLYLLDSPRTRKYLRPGFDLESLLAPF 197 (371)
T ss_pred HHHHHHHHHHHHhCCcchhhhhcCCccHHHHHHhh
Confidence 88889999999998888877666554455555444
No 94
>KOG1824 consensus TATA-binding protein-interacting protein [General function prediction only]
Probab=98.31 E-value=0.00049 Score=74.35 Aligned_cols=435 Identities=15% Similarity=0.113 Sum_probs=236.4
Q ss_pred HHHHHHHHHhhhhhccccchHHHHHHHHHHHHHHHHhhc-ChhhHHHHHhCCChHHHHHhhcCCCCCccccCCCccchHH
Q 005044 54 ALLSEVSAQVNVLNTTFSWLEADRAAAKRATHVLAELAK-NEEVVNWIVEGGAVPALVKHLQAPPTSEADRNLKPFEHEV 132 (717)
Q Consensus 54 ~~~~~i~~l~~~L~~~~~~~~~~~~~~~~a~~~L~~l~~-~~~~~~~~~~~g~i~~L~~lL~~~~~~~~~~~~~~~~~~v 132 (717)
.....++.+++.+...+...+.. .+..+...|..+.. .|+....- ....+|.+...|.+.+.. ...
T Consensus 428 ~L~~~~~~iVkai~~qlr~ks~k--t~~~cf~lL~eli~~lp~~l~~~-~~slvpgI~~~l~DkSss----------s~~ 494 (1233)
T KOG1824|consen 428 MLSDQVPLIVKAIQKQLREKSVK--TRQGCFLLLTELINVLPGALAQH-IPSLVPGIIYSLNDKSSS----------SNL 494 (1233)
T ss_pred HHHhhhHHHHHHHHHHHhhcccc--chhhHHHHHHHHHHhCcchhhhc-ccccchhhhhhcCCccch----------HHH
Confidence 35556677777776665533222 35556666666655 34322211 123567777777665441 167
Q ss_pred HhHHHHHHHHhc--CChhhHHHHHhCCChHHHHHHHhccccCCCccchhHHHHHHHHHHHHHhhcCchhhh-H-HHhcC-
Q 005044 133 EKGSAFALGLLA--VKPEHQQLIVDNGALSHLVNLLKRHMDSNCSRAVNSVIRRAADAITNLAHENSSIKT-R-VRMEG- 207 (717)
Q Consensus 133 ~~~a~~~L~~l~--~~~~~~~~~~~~~~i~~L~~lL~~~~~~~~~~~~~~~~~~a~~~L~~l~~~~~~~~~-~-~~~~~- 207 (717)
+..++..+.++. ..|+. ....++.|...+...-.++-+ .+-..|+.+...++..-.+... . +-...
T Consensus 495 ki~~L~fl~~~L~s~~p~~-----fhp~~~~Ls~~v~~aV~d~fy----KisaEAL~v~~~lvkvirpl~~~~~~d~~~~ 565 (1233)
T KOG1824|consen 495 KIDALVFLYSALISHPPEV-----FHPHLSALSPPVVAAVGDPFY----KISAEALLVCQQLVKVIRPLQPPSSFDASPY 565 (1233)
T ss_pred HHHHHHHHHHHHhcCChhh-----cccchhhhhhHHHHHhcCchH----hhhHHHHHHHHHHHHHhcccCCCccCCCChh
Confidence 777777777766 33332 234455555555443333222 5666677777777642111110 0 00001
Q ss_pred ---CcHHHHHhhc--CCCHHHHHHHHHHHHHhhccChhhHHHHHhcCCHHHHHHHHcCCCHHHHHHHHHHHHHhhcCChH
Q 005044 208 ---GIPPLVELLE--FTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSEDSAIHYEAVGVIGNLVHSSPN 282 (717)
Q Consensus 208 ---~i~~L~~ll~--~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~ 282 (717)
.+...++.++ +.|.+|++.|..++..+...-.+.-.... ...++.+++-+ .++-.|..|++++..++.+.-.
T Consensus 566 v~~m~~~tl~rL~a~d~DqeVkeraIscmgq~i~~fgD~l~~eL-~~~L~il~eRl--~nEiTRl~AvkAlt~Ia~S~l~ 642 (1233)
T KOG1824|consen 566 VKTMYDCTLQRLKATDSDQEVKERAISCMGQIIANFGDFLGNEL-PRTLPILLERL--GNEITRLTAVKALTLIAMSPLD 642 (1233)
T ss_pred HHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHHhhhhhhhh-HHHHHHHHHHH--hchhHHHHHHHHHHHHHhccce
Confidence 1222333443 46789999999999888652221111111 12345555555 3456788999999998765433
Q ss_pred HHHHHHHcCChHHHHHhhccCChHHHHHHHHHHHHHhcCChhhHHHHHhcCChHHHHHHhcCCCHHHHHHHHHHHHHhhc
Q 005044 283 IKKEVLAAGALQPVIGLLSSCCSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQSPDVQLREMSAFALGRLAQ 362 (717)
Q Consensus 283 ~~~~~~~~g~l~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~l~~~~~l~~L~~~l~~~~~~v~~~a~~~L~~l~~ 362 (717)
....-.-..+++.+.+.+.......+.....++..+..........-.-..++..+..++...+-.+-..|...|..++.
T Consensus 643 i~l~~~l~~il~~l~~flrK~~r~lr~~~l~a~~~L~~~~~~~~~~~~~e~vL~el~~Lisesdlhvt~~a~~~L~tl~~ 722 (1233)
T KOG1824|consen 643 IDLSPVLTEILPELASFLRKNQRALRLATLTALDKLVKNYSDSIPAELLEAVLVELPPLISESDLHVTQLAVAFLTTLAI 722 (1233)
T ss_pred eehhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHh
Confidence 32222334567788888877666666666666666643221111111112244556666667788888889999999988
Q ss_pred CCCCchhhHhcCChHHHHHhhcCCChhHHHHHHHHHHhc----cCC-Ccch--HHHH---HhcCccccccch--hHHhhh
Q 005044 363 DMHNQAGIAHNGGLVPLLKLLDSKNGSLQHNAAFALYGL----ADN-EDNV--ADFI---RVGGVQKLQDGE--FIVQAT 430 (717)
Q Consensus 363 ~~~~~~~l~~~~~l~~L~~ll~~~~~~v~~~a~~~L~~l----~~~-~~~~--~~l~---~~~~i~~L~~~~--~~~~~~ 430 (717)
.....-..+....++.++.++.++ -++..+..++.++ ... .++. ..+. ..-+.+...++. ..+.+.
T Consensus 723 ~~ps~l~~~~~~iL~~ii~ll~Sp--llqg~al~~~l~~f~alV~t~~~~l~y~~l~s~lt~PV~~~~~~~l~kqa~~si 800 (1233)
T KOG1824|consen 723 IQPSSLLKISNPILDEIIRLLRSP--LLQGGALSALLLFFQALVITKEPDLDYISLLSLLTAPVYEQVTDGLHKQAYYSI 800 (1233)
T ss_pred cccHHHHHHhhhhHHHHHHHhhCc--cccchHHHHHHHHHHHHHhcCCCCccHHHHHHHHcCCcccccccchhHHHHHHH
Confidence 776655556667788888888764 3333333333322 111 1111 1111 111111111111 123344
Q ss_pred HHHHHHHHHHHHHHhhhchHHHHHHHHhhc--chhHHHHHHHHHHhccCCCCCceeeecCCCHHHHHHHhcCCCchhhhh
Q 005044 431 KDCVAKTLKRLEEKIHGRVLNHLLYLMRVA--EKGVQRRVALALAHLCSPDDQRTIFIDGGGLELLLGLLGSTNPKQQLD 508 (717)
Q Consensus 431 ~~~~~~~~~~l~~~~~~~~~~~L~~ll~~~--~~~v~~~a~~aL~~l~~~~~~~~~~~~~~~l~~L~~ll~~~~~~v~~~ 508 (717)
..|++.....-... ...+...|+.-+.++ +..++..|...|+.+....+... ..+....+++-+++++++++.+
T Consensus 801 A~cvA~Lt~~~~~~-s~s~a~kl~~~~~s~~s~~~ikvfa~LslGElgr~~~~s~---~~e~~~~iieaf~sp~edvksA 876 (1233)
T KOG1824|consen 801 AKCVAALTCACPQK-SKSLATKLIQDLQSPKSSDSIKVFALLSLGELGRRKDLSP---QNELKDTIIEAFNSPSEDVKSA 876 (1233)
T ss_pred HHHHHHHHHhcccc-chhHHHHHHHHHhCCCCchhHHHHHHhhhhhhccCCCCCc---chhhHHHHHHHcCCChHHHHHH
Confidence 55555433322211 222344444444433 56778888888888877655221 1334456778889999999999
Q ss_pred hHHHHHHhhhc
Q 005044 509 GAVALFKLANK 519 (717)
Q Consensus 509 a~~~l~~L~~~ 519 (717)
|+.+|.+++.+
T Consensus 877 As~ALGsl~vg 887 (1233)
T KOG1824|consen 877 ASYALGSLAVG 887 (1233)
T ss_pred HHHHhhhhhcC
Confidence 99999998873
No 95
>KOG1789 consensus Endocytosis protein RME-8, contains DnaJ domain [Intracellular trafficking, secretion, and vesicular transport; Posttranslational modification, protein turnover, chaperones]
Probab=98.28 E-value=0.00046 Score=75.12 Aligned_cols=303 Identities=17% Similarity=0.179 Sum_probs=198.8
Q ss_pred HHHHHHHHHHHhhc-ChhhHHHHHh----CCChHHHHHhhcCCCCCccccCCCccchHHHhHHHHHHHHhcCChhhHHHH
Q 005044 79 AAKRATHVLAELAK-NEEVVNWIVE----GGAVPALVKHLQAPPTSEADRNLKPFEHEVEKGSAFALGLLAVKPEHQQLI 153 (717)
Q Consensus 79 ~~~~a~~~L~~l~~-~~~~~~~~~~----~g~i~~L~~lL~~~~~~~~~~~~~~~~~~v~~~a~~~L~~l~~~~~~~~~~ 153 (717)
-...++.+|.|+.. +|+....+.. .|..+.+..+|..... +.++..|+.++..+..+.++...+
T Consensus 1741 ~v~m~LtAL~Nli~~nPdlasvfgSe~~lig~F~l~~~~lr~~~~-----------~~iq~LaL~Vi~~~Tan~~Cv~~~ 1809 (2235)
T KOG1789|consen 1741 KVLMTLTALANLVSANPDLASVFGSEILLIGNFPLLITYLRCRKH-----------PKLQILALQVILLATANKECVTDL 1809 (2235)
T ss_pred HHHHHHHHHHHHHhhCcchhhhccchhhhhcccHHHHHHHHHcCC-----------chHHHHHHHHHHHHhcccHHHHHH
Confidence 46788999999888 7866555443 3667788888876443 289999999999998999999999
Q ss_pred HhCCChHHHHHHHhccccCCCccchhHHHHHHHHHHHHHhhcCchhhhHHHhcCCcHHHHHhh-cCCCHHHHHHHHHHHH
Q 005044 154 VDNGALSHLVNLLKRHMDSNCSRAVNSVIRRAADAITNLAHENSSIKTRVRMEGGIPPLVELL-EFTDTKVQRAAAGALR 232 (717)
Q Consensus 154 ~~~~~i~~L~~lL~~~~~~~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll-~~~~~~v~~~a~~~L~ 232 (717)
+..+.+..|+.+|.+.. ..+..++.+|..|+. ++.......+.|++..+..++ .+..+..|..++..+.
T Consensus 1810 a~~~vL~~LL~lLHS~P---------S~R~~vL~vLYAL~S-~~~i~keA~~hg~l~yil~~~c~~~~~QqRAqaAeLla 1879 (2235)
T KOG1789|consen 1810 ATCNVLTTLLTLLHSQP---------SMRARVLDVLYALSS-NGQIGKEALEHGGLMYILSILCLTNSDQQRAQAAELLA 1879 (2235)
T ss_pred HhhhHHHHHHHHHhcCh---------HHHHHHHHHHHHHhc-CcHHHHHHHhcCchhhhhHHHhccCcHHHHHHHHHHHH
Confidence 99999999999987653 788899999999998 555656667788887777655 5677899999999999
Q ss_pred HhhccChhh---HHHHHh----------cCCHHHHHHHHcC--CC------HHHHHHHHHHHHHhhcC-------Ch---
Q 005044 233 TLAFKNDEN---KNQIVE----------CNALPTLILMLRS--ED------SAIHYEAVGVIGNLVHS-------SP--- 281 (717)
Q Consensus 233 ~L~~~~~~~---~~~~~~----------~g~i~~L~~ll~~--~~------~~v~~~a~~~L~~l~~~-------~~--- 281 (717)
.+..+.-.. +..+++ .+.-+..+..+.+ ++ +..+...-..+..++.. ++
T Consensus 1880 Kl~Adkl~GPrV~ITL~kFLP~~f~d~~RD~PEAaVH~fE~T~EnPELiWn~~~r~kvS~~i~tM~~~~y~~QQk~p~~~ 1959 (2235)
T KOG1789|consen 1880 KLQADKLTGPRVTITLIKFLPEIFADSLRDSPEAAVHMFESTSENPELIWNEVTRQKVSGIIDTMVGKLYEQQQKDPTVK 1959 (2235)
T ss_pred HhhhccccCCceeeehHHhchHHHHHHHhcCHHHHHHHHhccCCCcccccCHhHHHHHHHHHHHHHHHHHHHhccCCccc
Confidence 998642211 111111 0112344444432 22 22233333334333210 00
Q ss_pred ----H------------------HHHHHHH------------cCChHHHHHhhccCCh--HHHHHHHHHHHHHhcCChhh
Q 005044 282 ----N------------------IKKEVLA------------AGALQPVIGLLSSCCS--ESQREAALLLGQFAATDSDC 325 (717)
Q Consensus 282 ----~------------------~~~~~~~------------~g~l~~L~~ll~~~~~--~~~~~a~~~L~~l~~~~~~~ 325 (717)
+ .+..+.. .++++.+.+++...++ ..-.-...++..+.+..+..
T Consensus 1960 W~~PEqsAg~~Ea~~E~aVGG~~~R~Fi~~P~f~LR~Pk~FL~~LLek~lelm~~~~peqh~l~lLt~A~V~L~r~hP~L 2039 (2235)
T KOG1789|consen 1960 WNTPEQSAGTSEADKECAVGGSINREFVVGPGFNLRHPKLFLTELLEKVLELMSRPTPEQHELDLLTKAFVELVRHHPNL 2039 (2235)
T ss_pred ccCchhhcchhhhccCcccchhhhHHHhhCCCCcccCHHHHHHHHHHHHHHHhcCCCcccchhHHHHHHHHHHHHhCcch
Confidence 0 0011111 1233444455544432 22222233444444556677
Q ss_pred HHHHHhcCChHHHHHHhcCCCHHHHHHHHHHHHHhhcCCCCchhhHhcCChHHHHHhhcCCChhHHHHHHHHHHhccC
Q 005044 326 KVHIVQRGAVRPLIEMLQSPDVQLREMSAFALGRLAQDMHNQAGIAHNGGLVPLLKLLDSKNGSLQHNAAFALYGLAD 403 (717)
Q Consensus 326 ~~~l~~~~~l~~L~~~l~~~~~~v~~~a~~~L~~l~~~~~~~~~l~~~~~l~~L~~ll~~~~~~v~~~a~~~L~~l~~ 403 (717)
...+-.-|.+|.++..+...+..+-..|+++|..|+.+.-....+.....+.+++..++.... ....|+.+|..+..
T Consensus 2040 ADqip~LGylPK~~~Am~~~n~s~P~SaiRVlH~Lsen~~C~~AMA~l~~i~~~m~~mkK~~~-~~GLA~EalkR~~~ 2116 (2235)
T KOG1789|consen 2040 ADQLPSLGYLPKFCTAMCLQNTSAPRSAIRVLHELSENQFCCDAMAQLPCIDGIMKSMKKQPS-LMGLAAEALKRLMK 2116 (2235)
T ss_pred hhhCCCccchHHHHHHHHhcCCcCcHHHHHHHHHHhhccHHHHHHhccccchhhHHHHHhcch-HHHHHHHHHHHHHH
Confidence 777777899999999997766666678999999999988888888888888888888765443 33478888877754
No 96
>KOG1061 consensus Vesicle coat complex AP-1/AP-2/AP-4, beta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.27 E-value=3e-05 Score=82.13 Aligned_cols=364 Identities=17% Similarity=0.164 Sum_probs=219.8
Q ss_pred ChHHHHHhhcCCCCCccccCCCccchHHHhHHHHHHHHhc-CChhhHHHHHhCCChHHHHHHHhccccCCCccchhHHHH
Q 005044 105 AVPALVKHLQAPPTSEADRNLKPFEHEVEKGSAFALGLLA-VKPEHQQLIVDNGALSHLVNLLKRHMDSNCSRAVNSVIR 183 (717)
Q Consensus 105 ~i~~L~~lL~~~~~~~~~~~~~~~~~~v~~~a~~~L~~l~-~~~~~~~~~~~~~~i~~L~~lL~~~~~~~~~~~~~~~~~ 183 (717)
..|-++......+- +++..+---+.+.+ ..|+.. +-.+-.++++..+. .+.++.
T Consensus 50 lF~dvvk~~~T~dl------------elKKlvyLYl~nYa~~~P~~a--------~~avnt~~kD~~d~-----np~iR~ 104 (734)
T KOG1061|consen 50 LFPDVVKCMQTRDL------------ELKKLVYLYLMNYAKGKPDLA--------ILAVNTFLKDCEDP-----NPLIRA 104 (734)
T ss_pred hhHHHHhhcccCCc------------hHHHHHHHHHHHhhccCchHH--------HhhhhhhhccCCCC-----CHHHHH
Confidence 45677777777766 88888888888888 666643 23333445544332 126777
Q ss_pred HHHHHHHHHhhcCchhhhHHHhcCCcHHHHHhhcCCCHHHHHHHHHHHHHhhccChhhHHHHHhcCCHHHHHHHHcCCCH
Q 005044 184 RAADAITNLAHENSSIKTRVRMEGGIPPLVELLEFTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSEDS 263 (717)
Q Consensus 184 ~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~g~i~~L~~ll~~~~~ 263 (717)
.|++.++.+-. +..- ......+...+++.++.+|..+.-+..++-. .+.+...+.|.++.|..++.++++
T Consensus 105 lAlrtm~~l~v--~~i~-----ey~~~Pl~~~l~d~~~yvRktaa~~vakl~~---~~~~~~~~~gl~~~L~~ll~D~~p 174 (734)
T KOG1061|consen 105 LALRTMGCLRV--DKIT-----EYLCDPLLKCLKDDDPYVRKTAAVCVAKLFD---IDPDLVEDSGLVDALKDLLSDSNP 174 (734)
T ss_pred HHhhceeeEee--hHHH-----HHHHHHHHHhccCCChhHHHHHHHHHHHhhc---CChhhccccchhHHHHHHhcCCCc
Confidence 77776654432 1111 1245688999999999999999988888853 445567788999999999999999
Q ss_pred HHHHHHHHHHHHhhcCChHHHHHHHHcCChHHHHHhhccCChHHHHHHHHHHHHHhcCChhhHHHHHhcCChHHHHHHhc
Q 005044 264 AIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLSSCCSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQ 343 (717)
Q Consensus 264 ~v~~~a~~~L~~l~~~~~~~~~~~~~~g~l~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~l~~~~~l~~L~~~l~ 343 (717)
.|...|+.+|..+...+.......+....+..++..+.....=-+. .++..++...+.-.... ..++..+...+.
T Consensus 175 ~VVAnAlaaL~eI~e~~~~~~~~~l~~~~~~~lL~al~ec~EW~qi---~IL~~l~~y~p~d~~ea--~~i~~r~~p~Lq 249 (734)
T KOG1061|consen 175 MVVANALAALSEIHESHPSVNLLELNPQLINKLLEALNECTEWGQI---FILDCLAEYVPKDSREA--EDICERLTPRLQ 249 (734)
T ss_pred hHHHHHHHHHHHHHHhCCCCCcccccHHHHHHHHHHHHHhhhhhHH---HHHHHHHhcCCCCchhH--HHHHHHhhhhhc
Confidence 9999999999999765543111111122344444444443322222 23333432222211111 235677777888
Q ss_pred CCCHHHHHHHHHHHHHhhcCCCCchhhHhcCChHHHHHhhcCCChhHHHHHHHHHHhccCCCcchHHHHHhcCccccc--
Q 005044 344 SPDVQLREMSAFALGRLAQDMHNQAGIAHNGGLVPLLKLLDSKNGSLQHNAAFALYGLADNEDNVADFIRVGGVQKLQ-- 421 (717)
Q Consensus 344 ~~~~~v~~~a~~~L~~l~~~~~~~~~l~~~~~l~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~l~~~~~i~~L~-- 421 (717)
+.++.+...+..++.++...........-...-++++.++.+.+ +++..++.=+.-+....+. +.....---+.
T Consensus 250 h~n~avvlsavKv~l~~~~~~~~~~~~~~~K~~~pl~tlls~~~-e~qyvaLrNi~lil~~~p~---~~~~~~~~Ff~ky 325 (734)
T KOG1061|consen 250 HANSAVVLSAVKVILQLVKYLKQVNELLFKKVAPPLVTLLSSES-EIQYVALRNINLILQKRPE---ILKVEIKVFFCKY 325 (734)
T ss_pred cCCcceEeehHHHHHHHHHHHHHHHHHHHHHhcccceeeecccc-hhhHHHHhhHHHHHHhChH---HHHhHhHeeeeec
Confidence 88888888888888887765444333444445556666666655 6666555444333321111 22211100011
Q ss_pred -cchhHHhhhHHHHHHHHHHHHHHhhhchHHHHHHHHhhcchhHHHHHHHHHHhccCCCCCceeeecCCCHHHHHHHhcC
Q 005044 422 -DGEFIVQATKDCVAKTLKRLEEKIHGRVLNHLLYLMRVAEKGVQRRVALALAHLCSPDDQRTIFIDGGGLELLLGLLGS 500 (717)
Q Consensus 422 -~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~~~~~~l~~L~~ll~~ 500 (717)
+....-..-.+|+..... ...-.+++..|...-..-+++....++++|++++..-+.. .+.++.|+.+++.
T Consensus 326 nDPiYvK~eKleil~~la~---~~nl~qvl~El~eYatevD~~fvrkaIraig~~aik~e~~-----~~cv~~lLell~~ 397 (734)
T KOG1061|consen 326 NDPIYVKLEKLEILIELAN---DANLAQVLAELKEYATEVDVDFVRKAVRAIGRLAIKAEQS-----NDCVSILLELLET 397 (734)
T ss_pred CCchhhHHHHHHHHHHHhh---HhHHHHHHHHHHHhhhhhCHHHHHHHHHHhhhhhhhhhhh-----hhhHHHHHHHHhh
Confidence 111111122333322110 0011125555555556668899999999999997664432 6789999999998
Q ss_pred CCchhhhhhHHHHHHhhhcc
Q 005044 501 TNPKQQLDGAVALFKLANKA 520 (717)
Q Consensus 501 ~~~~v~~~a~~~l~~L~~~~ 520 (717)
+..-+..++...+..+.++-
T Consensus 398 ~~~yvvqE~~vvi~dilRky 417 (734)
T KOG1061|consen 398 KVDYVVQEAIVVIRDILRKY 417 (734)
T ss_pred cccceeeehhHHHHhhhhcC
Confidence 88888888999999988764
No 97
>TIGR02270 conserved hypothetical protein. Members are found in Myxococcus xanthus (six members), Geobacter sulfurreducens, and Pseudomonas aeruginosa; a short protein homologous to the N-terminal region is found in Mesorhizobium loti. All sequence are from Proteobacteria. The function is unknown.
Probab=98.26 E-value=0.00013 Score=75.20 Aligned_cols=211 Identities=22% Similarity=0.110 Sum_probs=123.6
Q ss_pred hHHHHHhhcCCCCCccccCCCccchHHHhHHHHHHHHhcCChhhHHHHHhCCChHHHHHHHhccccCCCccchhHHHHHH
Q 005044 106 VPALVKHLQAPPTSEADRNLKPFEHEVEKGSAFALGLLAVKPEHQQLIVDNGALSHLVNLLKRHMDSNCSRAVNSVIRRA 185 (717)
Q Consensus 106 i~~L~~lL~~~~~~~~~~~~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~i~~L~~lL~~~~~~~~~~~~~~~~~~a 185 (717)
+..|+..|.+.+. .++..++.+|+.+-.. ...+.|+.+|++.+. .++..+
T Consensus 88 ~~~L~~~L~d~~~------------~vr~aaa~ALg~i~~~----------~a~~~L~~~L~~~~p--------~vR~aa 137 (410)
T TIGR02270 88 LRSVLAVLQAGPE------------GLCAGIQAALGWLGGR----------QAEPWLEPLLAASEP--------PGRAIG 137 (410)
T ss_pred HHHHHHHhcCCCH------------HHHHHHHHHHhcCCch----------HHHHHHHHHhcCCCh--------HHHHHH
Confidence 5666666665544 6677777777655422 224556666655544 555555
Q ss_pred HHHHHHHhhcCchhhhHHHhcCCcHHHHHhhcCCCHHHHHHHHHHHHHhhccChhhHHHHHhcCCHHHHHHHHcCCCHHH
Q 005044 186 ADAITNLAHENSSIKTRVRMEGGIPPLVELLEFTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSEDSAI 265 (717)
Q Consensus 186 ~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~v 265 (717)
+.++...- ....+.+..+|++.++.++..|+.+|..+-. ...++.|...+.+.++.|
T Consensus 138 l~al~~r~------------~~~~~~L~~~L~d~d~~Vra~A~raLG~l~~-----------~~a~~~L~~al~d~~~~V 194 (410)
T TIGR02270 138 LAALGAHR------------HDPGPALEAALTHEDALVRAAALRALGELPR-----------RLSESTLRLYLRDSDPEV 194 (410)
T ss_pred HHHHHhhc------------cChHHHHHHHhcCCCHHHHHHHHHHHHhhcc-----------ccchHHHHHHHcCCCHHH
Confidence 54444311 1123456666667777777777777766653 124555666677777777
Q ss_pred HHHHHHHHHHhhcCChHHHHHHHHcCChHHHHHhhccCChHHHHHHHHHHHHHhcCChhhHHHHHhcCChHHHHHHhcCC
Q 005044 266 HYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLSSCCSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQSP 345 (717)
Q Consensus 266 ~~~a~~~L~~l~~~~~~~~~~~~~~g~l~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~l~~~~~l~~L~~~l~~~ 345 (717)
+..|++++..+- .+. .+..+..+...........+..++... .. ...++.|..+++++
T Consensus 195 R~aA~~al~~lG--~~~---------A~~~l~~~~~~~g~~~~~~l~~~lal~--~~---------~~a~~~L~~ll~d~ 252 (410)
T TIGR02270 195 RFAALEAGLLAG--SRL---------AWGVCRRFQVLEGGPHRQRLLVLLAVA--GG---------PDAQAWLRELLQAA 252 (410)
T ss_pred HHHHHHHHHHcC--CHh---------HHHHHHHHHhccCccHHHHHHHHHHhC--Cc---------hhHHHHHHHHhcCh
Confidence 777777775552 121 123344433333332332222222222 11 14567788888764
Q ss_pred CHHHHHHHHHHHHHhhcCCCCchhhHhcCChHHHHHhhcCCChhHHHHHHHHHHhccCCC
Q 005044 346 DVQLREMSAFALGRLAQDMHNQAGIAHNGGLVPLLKLLDSKNGSLQHNAAFALYGLADNE 405 (717)
Q Consensus 346 ~~~v~~~a~~~L~~l~~~~~~~~~l~~~~~l~~L~~ll~~~~~~v~~~a~~~L~~l~~~~ 405 (717)
. ++..++++++.+-.. ..++.|++.+.+.. ++..|..++..|+.-+
T Consensus 253 ~--vr~~a~~AlG~lg~p----------~av~~L~~~l~d~~--~aR~A~eA~~~ItG~~ 298 (410)
T TIGR02270 253 A--TRREALRAVGLVGDV----------EAAPWCLEAMREPP--WARLAGEAFSLITGMD 298 (410)
T ss_pred h--hHHHHHHHHHHcCCc----------chHHHHHHHhcCcH--HHHHHHHHHHHhhCCC
Confidence 4 888999999877542 36888888886544 9999999999998643
No 98
>COG5181 HSH155 U2 snRNP spliceosome subunit [RNA processing and modification]
Probab=98.24 E-value=2.4e-05 Score=79.96 Aligned_cols=262 Identities=15% Similarity=0.122 Sum_probs=162.4
Q ss_pred hHHHHHhhcCCCCCccccCCCccchHHHhHHHHHHHHhcC-Chhh--HHHHHhCCChHHHHHHHhccccCCCccchhHHH
Q 005044 106 VPALVKHLQAPPTSEADRNLKPFEHEVEKGSAFALGLLAV-KPEH--QQLIVDNGALSHLVNLLKRHMDSNCSRAVNSVI 182 (717)
Q Consensus 106 i~~L~~lL~~~~~~~~~~~~~~~~~~v~~~a~~~L~~l~~-~~~~--~~~~~~~~~i~~L~~lL~~~~~~~~~~~~~~~~ 182 (717)
+...+.+|++..+ .+|.+|+...+.|+- -..+ -+.+...| ..|.+.|....+ ++.
T Consensus 606 vStiL~~L~~k~p------------~vR~~aadl~~sl~~vlk~c~e~~~l~klg--~iLyE~lge~yp--------EvL 663 (975)
T COG5181 606 VSTILKLLRSKPP------------DVRIRAADLMGSLAKVLKACGETKELAKLG--NILYENLGEDYP--------EVL 663 (975)
T ss_pred HHHHHHHhcCCCc------------cHHHHHHHHHHHHHHHHHhcchHHHHHHHh--HHHHHhcCcccH--------HHH
Confidence 4456677777766 899999999999881 1111 11222222 224444544444 666
Q ss_pred HHHHHHHHHHhhcCchhhhHHHhcCCcHHHHHhhcCCCHHHHHHHHHHHHHhhccChhhH---HHHHhcCCHHHHHHHHc
Q 005044 183 RRAADAITNLAHENSSIKTRVRMEGGIPPLVELLEFTDTKVQRAAAGALRTLAFKNDENK---NQIVECNALPTLILMLR 259 (717)
Q Consensus 183 ~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~L~~~~~~~~---~~~~~~g~i~~L~~ll~ 259 (717)
-..+.++..+.....--...--..|++|.|..+|++....++......+..++...++.. +-+. +.=-|+..|+
T Consensus 664 gsil~Ai~~I~sv~~~~~mqpPi~~ilP~ltPILrnkh~Kv~~nti~lvg~I~~~~peyi~~rEWMR---IcfeLvd~Lk 740 (975)
T COG5181 664 GSILKAICSIYSVHRFRSMQPPISGILPSLTPILRNKHQKVVANTIALVGTICMNSPEYIGVREWMR---ICFELVDSLK 740 (975)
T ss_pred HHHHHHHHHHhhhhcccccCCchhhccccccHhhhhhhHHHhhhHHHHHHHHHhcCcccCCHHHHHH---HHHHHHHHHH
Confidence 555555555543221111111124789999999999999999999999999997665531 1111 2234778889
Q ss_pred CCCHHHHHHHHHHHHHhhcCChHHHHHHHHcCChHHHHHhhccCChHHHHHHHHHHHHHhcCChhhHHHHHhcCChHHHH
Q 005044 260 SEDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLSSCCSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLI 339 (717)
Q Consensus 260 ~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~l~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~l~~~~~l~~L~ 339 (717)
+.+.++|+.|..+++.++.. +--..++..|+.-|+..+...|.....+++-.+..+- -..++|.|+
T Consensus 741 s~nKeiRR~A~~tfG~Is~a-------iGPqdvL~~LlnnLkvqeRq~RvctsvaI~iVae~cg-------pfsVlP~lm 806 (975)
T COG5181 741 SWNKEIRRNATETFGCISRA-------IGPQDVLDILLNNLKVQERQQRVCTSVAISIVAEYCG-------PFSVLPTLM 806 (975)
T ss_pred HhhHHHHHhhhhhhhhHHhh-------cCHHHHHHHHHhcchHHHHHhhhhhhhhhhhhHhhcC-------chhhHHHHH
Confidence 99999999999999998642 1112234555555554433333333334443332111 123566666
Q ss_pred HHhcCCCHHHHHHHHHHHHHhhcCCCCchhhHhcCChHHHHHhhcCCChhHHHHHHHHHHhccCCCc
Q 005044 340 EMLQSPDVQLREMSAFALGRLAQDMHNQAGIAHNGGLVPLLKLLDSKNGSLQHNAAFALYGLADNED 406 (717)
Q Consensus 340 ~~l~~~~~~v~~~a~~~L~~l~~~~~~~~~l~~~~~l~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~ 406 (717)
.=-..++..++.-.+.+++.+-..-.+...=.-....|.|-+.|.+.++..+..|...+..|+.+..
T Consensus 807 ~dY~TPe~nVQnGvLkam~fmFeyig~~s~dYvy~itPlleDAltDrD~vhRqta~nvI~Hl~Lnc~ 873 (975)
T COG5181 807 SDYETPEANVQNGVLKAMCFMFEYIGQASLDYVYSITPLLEDALTDRDPVHRQTAMNVIRHLVLNCP 873 (975)
T ss_pred hcccCchhHHHHhHHHHHHHHHHHHHHHHHHHHHHhhHHHHhhhcccchHHHHHHHHHHHHHhcCCC
Confidence 6666678888888888888776543332222222345667788899999999999999999987743
No 99
>KOG4646 consensus Uncharacterized conserved protein, contains ARM repeats [Function unknown]
Probab=98.23 E-value=1.5e-05 Score=65.06 Aligned_cols=119 Identities=16% Similarity=0.196 Sum_probs=103.0
Q ss_pred HHHhHHHHHHHHhcCChhhHHHHHhCCChHHHHHHHhccccCCCccchhHHHHHHHHHHHHHhhcCchhhhHHHhcCCcH
Q 005044 131 EVEKGSAFALGLLAVKPEHQQLIVDNGALSHLVNLLKRHMDSNCSRAVNSVIRRAADAITNLAHENSSIKTRVRMEGGIP 210 (717)
Q Consensus 131 ~v~~~a~~~L~~l~~~~~~~~~~~~~~~i~~L~~lL~~~~~~~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~ 210 (717)
+.+++...-|+|++-+|-+-..+.+.+++..++..|...+. .+.+.++..|+|+|- ++.+...+.+.+++|
T Consensus 32 eakeqv~ANLANFAYDP~Nys~Lrql~vLdlFvdsl~e~ne--------~LvefgIgglCNlC~-d~~n~~~I~ea~g~p 102 (173)
T KOG4646|consen 32 EAKEQVTANLANFAYDPINYSHLRQLDVLDLFVDSLEEQNE--------LLVEFGIGGLCNLCL-DKTNAKFIREALGLP 102 (173)
T ss_pred HHHHHHHHHHHhhccCcchHHHHHHhhHHHHHHHHhhcccH--------HHHHHhHHHHHhhcc-ChHHHHHHHHhcCCc
Confidence 88999999999999999998999999999999999998876 899999999999998 677788899999999
Q ss_pred HHHHhhcCCCHHHHHHHHHHHHHhhccChhhHHHHHhcCCHHHHHHHH
Q 005044 211 PLVELLEFTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILML 258 (717)
Q Consensus 211 ~L~~ll~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~g~i~~L~~ll 258 (717)
.++..+.++...+...++.++..|+......+..+....++..+.+.-
T Consensus 103 lii~~lssp~e~tv~sa~~~l~~l~~~~Rt~r~ell~p~Vv~~v~r~~ 150 (173)
T KOG4646|consen 103 LIIFVLSSPPEITVHSAALFLQLLEFGERTERDELLSPAVVRTVQRWR 150 (173)
T ss_pred eEEeecCCChHHHHHHHHHHHHHhcCcccchhHHhccHHHHHHHHHHH
Confidence 999999999999999999999999987666677666655555555444
No 100
>KOG0783 consensus Uncharacterized conserved protein, contains ankyrin and BTB/POZ domains [Function unknown]
Probab=98.21 E-value=1.2e-06 Score=92.09 Aligned_cols=67 Identities=28% Similarity=0.457 Sum_probs=55.6
Q ss_pred CCCccEEEEEcCeEeehhHHHHhhccHHHHHhhcCCCCCCC------------CcceEcCCCCHHHHHHHHHHHhcCcc
Q 005044 547 ATLSDVTFLVEGRRFYAHRICLLASSDAFRAMFDGGYREKD------------ARDIEIPNIRWEVFELMMRFIYTGSV 613 (717)
Q Consensus 547 ~~~~Dv~~~~~~~~~~~h~~il~~~s~~f~~~~~~~~~e~~------------~~~i~l~~~~~~~~~~~l~~~Yt~~~ 613 (717)
..+.||+|.+++..|++||.||++||+||+++|...-+.+. ...+.+.+++|..|+.+|+|+||+..
T Consensus 556 ds~hDVtf~vg~~~F~aHKfIl~~rs~flrkL~l~~~~~s~~~dIY~~~~~~~~~~~~ve~i~p~mfe~lL~~iYtdt~ 634 (1267)
T KOG0783|consen 556 DSFHDVTFYVGTSMFHAHKFILCARSSFLRKLLLQKKKSSVSNDIYIEEITQSHSTIRVEDIPPLMFEILLHYIYTDTL 634 (1267)
T ss_pred cccceEEEEecCeecccceEEEEeccHHHHHHHHhhccccccceeeeecccccCceeeeccCCHHHHHHHHHHHhcccc
Confidence 46789999999999999999999999999999975432211 12455789999999999999999853
No 101
>PF05536 Neurochondrin: Neurochondrin
Probab=98.21 E-value=0.0014 Score=70.73 Aligned_cols=241 Identities=16% Similarity=0.145 Sum_probs=161.3
Q ss_pred hHHHHHhhcCCCCCccccCCCccchHHHhHHHHHHHHhc-CCh---hhHHHHHhCCChHHHHHHHhccccCCCccchhHH
Q 005044 106 VPALVKHLQAPPTSEADRNLKPFEHEVEKGSAFALGLLA-VKP---EHQQLIVDNGALSHLVNLLKRHMDSNCSRAVNSV 181 (717)
Q Consensus 106 i~~L~~lL~~~~~~~~~~~~~~~~~~v~~~a~~~L~~l~-~~~---~~~~~~~~~~~i~~L~~lL~~~~~~~~~~~~~~~ 181 (717)
+..-+.+|+..+. +=|-.++-.+.++. .++ ..++.+.+.-+.+.+-++|+....+... +....
T Consensus 7 l~~c~~lL~~~~D------------~~rfagL~lvtk~~~~~~~~~~~~~~v~~aig~~Fl~RLL~t~~~~~~~-~~~~~ 73 (543)
T PF05536_consen 7 LEKCLSLLKSADD------------TERFAGLLLVTKLLDADDEDSQTRRRVFEAIGFKFLDRLLRTGSVPSDC-PPEEY 73 (543)
T ss_pred HHHHHHHhccCCc------------HHHHHHHHHHHHcCCCchhhHHHHHHHHHhcChhHHHHHhcCCCCCCCC-CHHHH
Confidence 4566777777663 66778888888888 333 2234567777788888999875432211 23378
Q ss_pred HHHHHHHHHHHhhcCchhhhHHHhcCCcHHHHHhhcCCCH-HHHHHHHHHHHHhhccChhhHHHHHhcCCHHHHHHHHcC
Q 005044 182 IRRAADAITNLAHENSSIKTRVRMEGGIPPLVELLEFTDT-KVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRS 260 (717)
Q Consensus 182 ~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~-~v~~~a~~~L~~L~~~~~~~~~~~~~~g~i~~L~~ll~~ 260 (717)
+..++.+|..+|. .++....-...+-||.|++.+...+. .+...++.+|..++. .++.++.+.+.|+++.|++.+.+
T Consensus 74 ~~LavsvL~~f~~-~~~~a~~~~~~~~IP~Lle~l~~~s~~~~v~dalqcL~~Ias-~~~G~~aLl~~g~v~~L~ei~~~ 151 (543)
T PF05536_consen 74 LSLAVSVLAAFCR-DPELASSPQMVSRIPLLLEILSSSSDLETVDDALQCLLAIAS-SPEGAKALLESGAVPALCEIIPN 151 (543)
T ss_pred HHHHHHHHHHHcC-ChhhhcCHHHHHHHHHHHHHHHcCCchhHHHHHHHHHHHHHc-CcHhHHHHHhcCCHHHHHHHHHh
Confidence 8899999999998 55443222233578999999977666 999999999999995 89999999999999999999977
Q ss_pred CCHHHHHHHHHHHHHhhcCChH-HHH--HHHHcCChHHHHHhhccCChHHHHHHHHHHHHHhcCChhh-HHHHHh----c
Q 005044 261 EDSAIHYEAVGVIGNLVHSSPN-IKK--EVLAAGALQPVIGLLSSCCSESQREAALLLGQFAATDSDC-KVHIVQ----R 332 (717)
Q Consensus 261 ~~~~v~~~a~~~L~~l~~~~~~-~~~--~~~~~g~l~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~-~~~l~~----~ 332 (717)
.+.....|+.++.+++..... ... .-.-..+++.+...+.......+-..+..|..+-...+.. ...... .
T Consensus 152 -~~~~~E~Al~lL~~Lls~~~~~~~~~~~~~l~~il~~La~~fs~~~~~~kfell~~L~~~L~~~~~~~~~~~~~~~W~~ 230 (543)
T PF05536_consen 152 -QSFQMEIALNLLLNLLSRLGQKSWAEDSQLLHSILPSLARDFSSFHGEDKFELLEFLSAFLPRSPILPLESPPSPKWLS 230 (543)
T ss_pred -CcchHHHHHHHHHHHHHhcchhhhhhhHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHhcCcCCccccccCChhhhHH
Confidence 556678888888888654331 100 0000134455556666666667777888888876544211 111112 2
Q ss_pred CChHHHHHHhcC-CCHHHHHHHHHHHHHhhc
Q 005044 333 GAVRPLIEMLQS-PDVQLREMSAFALGRLAQ 362 (717)
Q Consensus 333 ~~l~~L~~~l~~-~~~~v~~~a~~~L~~l~~ 362 (717)
.+...+..++++ ..+.-|..++.....|..
T Consensus 231 ~l~~gl~~iL~sr~~~~~R~~al~Laa~Ll~ 261 (543)
T PF05536_consen 231 DLRKGLRDILQSRLTPSQRDPALNLAASLLD 261 (543)
T ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHHHHH
Confidence 344455566655 466677777766666654
No 102
>COG5369 Uncharacterized conserved protein [Function unknown]
Probab=98.21 E-value=1.7e-05 Score=79.87 Aligned_cols=269 Identities=14% Similarity=0.101 Sum_probs=182.7
Q ss_pred CCccchHHHhHHHHHHHHhc-CChhhHHHHHhCCChHHHHHHHhccccCCCccchhHHHHHHHHHHHHHhhcCchhhhHH
Q 005044 125 LKPFEHEVEKGSAFALGLLA-VKPEHQQLIVDNGALSHLVNLLKRHMDSNCSRAVNSVIRRAADAITNLAHENSSIKTRV 203 (717)
Q Consensus 125 ~~~~~~~v~~~a~~~L~~l~-~~~~~~~~~~~~~~i~~L~~lL~~~~~~~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~ 203 (717)
+..+|..-..+++.+|-.++ .-.-.|.-+.+..+.+.|+++|++.+. -+...+...++|+...-+..+..+
T Consensus 398 n~~~d~l~~~a~~l~LkS~SrSV~~LRTgL~d~~I~elLi~~Ls~Pei--------mi~~~~t~~icn~vv~fsnL~~~f 469 (743)
T COG5369 398 NRKQDDLDFVAIVLFLKSMSRSVTFLRTGLLDYPIVELLIDALSNPEI--------MIEFPDTIDICNKVVPFSNLGAGF 469 (743)
T ss_pred CccchHHHHHHHHHHHHHhhHHHHHHHhhccccchHHHHHHHhcCccc--------eeeccchhhhhheeeeccchHHHH
Confidence 34444455556666676676 445567778888899999999988543 344456777888887788888899
Q ss_pred HhcCCcHHHHHhhcCCCHHHHHHHHHHHHHhhccChhh-HHHHHhcCCHHHHHHHHcCCCHHHHHHHHHHHHHhhcCChH
Q 005044 204 RMEGGIPPLVELLEFTDTKVQRAAAGALRTLAFKNDEN-KNQIVECNALPTLILMLRSEDSAIHYEAVGVIGNLVHSSPN 282 (717)
Q Consensus 204 ~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~L~~~~~~~-~~~~~~~g~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~ 282 (717)
...|++..|+.++.+.+..+|....|+++.+..+.+.+ +-.+...-++..++.+.+++.-.|+..++..|.|+..+...
T Consensus 470 L~~~iIdvl~~~v~sKDdaLqans~wvlrHlmyncq~~ekf~~Lakig~~kvl~~~NDpc~~vq~q~lQilrNftc~~~k 549 (743)
T COG5369 470 LEKSIIDVLVNLVMSKDDALQANSEWVLRHLMYNCQKNEKFKFLAKIGVEKVLSYTNDPCFKVQHQVLQILRNFTCDTSK 549 (743)
T ss_pred HHhhHHHHHHHHhhcchhhhhhcchhhhhhhhhcCcchhhhhhHHhcCHHHHHHHhcCcccccHHHHHHHHHhccccccc
Confidence 99999999999999999999999999999999865544 33455566789999999999999999999999999764322
Q ss_pred ---HHHHHHHcC----ChHHHHHhhccCChHHHHHHHHHHHHHhcCChhhHHHHHh-cCChHHHHHHhc-----------
Q 005044 283 ---IKKEVLAAG----ALQPVIGLLSSCCSESQREAALLLGQFAATDSDCKVHIVQ-RGAVRPLIEMLQ----------- 343 (717)
Q Consensus 283 ---~~~~~~~~g----~l~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~l~~-~~~l~~L~~~l~----------- 343 (717)
...-.+... +.+.|++.+...++-.....+..|.+++..+...+..+.+ ..++..+..+|.
T Consensus 550 nEkskdv~~K~~p~~ylfk~l~~k~e~~np~~i~~~~yilv~~aa~d~~l~~~V~~q~~~L~~i~eil~e~a~r~~L~pg 629 (743)
T COG5369 550 NEKSKDVFIKATPRRYLFKRLIDKYEENNPMEILEGCYILVRNAACDDTLDYIVQSQEDMLDSIFEILDEFAGRTPLSPG 629 (743)
T ss_pred ccccceeEEecChHHHHHHHHHHHHHhcCchhhhhhHHHHHHHHhccchHHHHHHhHHHHHHHHHHHHHHHcccCCCCCC
Confidence 111111111 3455666667777666666788888877666555444333 223322222221
Q ss_pred ------------------------------------------CCCHHHHHHHHHHHHHhhcCCCC---------chh-hH
Q 005044 344 ------------------------------------------SPDVQLREMSAFALGRLAQDMHN---------QAG-IA 371 (717)
Q Consensus 344 ------------------------------------------~~~~~v~~~a~~~L~~l~~~~~~---------~~~-l~ 371 (717)
.++.+.-.++.|.+.|+.-...+ +.. +.
T Consensus 630 ~~~~~v~~p~s~~~v~l~e~~d~f~r~~~~~p~~D~~~~d~~~~NdE~~~agiw~~in~~w~~~~~~vtratveR~~iL~ 709 (743)
T COG5369 630 SKEEHVLLPISYTIVNLSENSDKFKRLVLTTPHLDNMKKDSTTRNDELSIAGIWIIINLSWKEDGSEVTRATVERIQILC 709 (743)
T ss_pred CCcccccCccceeeecccccccccccceecCCCccccccccCCCchhhhhccceEEEecccCccCCccchhhHHHHHHHH
Confidence 12334556677777776532211 222 44
Q ss_pred hcCChHHHHHhhcCCChhHHHHHHHHHHhc
Q 005044 372 HNGGLVPLLKLLDSKNGSLQHNAAFALYGL 401 (717)
Q Consensus 372 ~~~~l~~L~~ll~~~~~~v~~~a~~~L~~l 401 (717)
+.|.-+.+..+..+.+..|++.+-.+|.++
T Consensus 710 ~~G~~e~l~k~q~~~Sl~vrek~~taL~~l 739 (743)
T COG5369 710 ANGIREWLVKIQAKDSLIVREKIGTALENL 739 (743)
T ss_pred HccHHHHHHHHhccCcHHHHHHHHHHHHhh
Confidence 445555566666777889999999998876
No 103
>KOG1059 consensus Vesicle coat complex AP-3, delta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.19 E-value=0.00029 Score=73.86 Aligned_cols=216 Identities=21% Similarity=0.242 Sum_probs=158.0
Q ss_pred hHHHHHHHhccccCCCccchhHHHHHHHHHHHHHhhcCchhhhHHHhcCCcHHHHHhhcCCCHHHHHHHHHHHHHhhccC
Q 005044 159 LSHLVNLLKRHMDSNCSRAVNSVIRRAADAITNLAHENSSIKTRVRMEGGIPPLVELLEFTDTKVQRAAAGALRTLAFKN 238 (717)
Q Consensus 159 i~~L~~lL~~~~~~~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~L~~~~ 238 (717)
-+-++.+|.+..+ -++..|+.++..++...++.- ...+|.|++-|.++|+.|+.+|..+++.|+..+
T Consensus 146 a~Dv~tLL~sskp--------YvRKkAIl~lykvFLkYPeAl-----r~~FprL~EkLeDpDp~V~SAAV~VICELArKn 212 (877)
T KOG1059|consen 146 ADDVFTLLNSSKP--------YVRKKAILLLYKVFLKYPEAL-----RPCFPRLVEKLEDPDPSVVSAAVSVICELARKN 212 (877)
T ss_pred HHHHHHHHhcCch--------HHHHHHHHHHHHHHHhhhHhH-----hhhHHHHHHhccCCCchHHHHHHHHHHHHHhhC
Confidence 3557788887776 899999999999987666532 236799999999999999999999999999988
Q ss_pred hhhHHHHHhcCCHHHHHHHHcC-CCHHHHHHHHHHHHHhhcCChHHHHHHHHcCChHHHHHhhccCC-hHHHHHHHHHHH
Q 005044 239 DENKNQIVECNALPTLILMLRS-EDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLSSCC-SESQREAALLLG 316 (717)
Q Consensus 239 ~~~~~~~~~~g~i~~L~~ll~~-~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~l~~L~~ll~~~~-~~~~~~a~~~L~ 316 (717)
|.+.-. +-|.+.++|.+ .+.=+....+...++|+--.+... ..++++|..++.+.. ..+..+|..++-
T Consensus 213 PknyL~-----LAP~ffkllttSsNNWmLIKiiKLF~aLtplEPRLg-----KKLieplt~li~sT~AmSLlYECvNTVV 282 (877)
T KOG1059|consen 213 PQNYLQ-----LAPLFYKLLVTSSNNWVLIKLLKLFAALTPLEPRLG-----KKLIEPITELMESTVAMSLLYECVNTVV 282 (877)
T ss_pred Cccccc-----ccHHHHHHHhccCCCeehHHHHHHHhhccccCchhh-----hhhhhHHHHHHHhhHHHHHHHHHHHHhe
Confidence 877543 34788888865 455567777888888876655543 346889999998765 345555554332
Q ss_pred --HHhcCChhhHHHHHhcCChHHHHHHhcCCCHHHHHHHHHHHHHhhcCCCCchhhHhcCChHHHHHhhcCCChhHHHHH
Q 005044 317 --QFAATDSDCKVHIVQRGAVRPLIEMLQSPDVQLREMSAFALGRLAQDMHNQAGIAHNGGLVPLLKLLDSKNGSLQHNA 394 (717)
Q Consensus 317 --~l~~~~~~~~~~l~~~~~l~~L~~~l~~~~~~v~~~a~~~L~~l~~~~~~~~~l~~~~~l~~L~~ll~~~~~~v~~~a 394 (717)
++.++.++....+. =+++.|-.++.+.|+.++.-++.+++.++..++- .+. ..-+.++++|.+.++.+|..|
T Consensus 283 a~s~s~g~~d~~asiq--LCvqKLr~fiedsDqNLKYlgLlam~KI~ktHp~---~Vq-a~kdlIlrcL~DkD~SIRlrA 356 (877)
T KOG1059|consen 283 AVSMSSGMSDHSASIQ--LCVQKLRIFIEDSDQNLKYLGLLAMSKILKTHPK---AVQ-AHKDLILRCLDDKDESIRLRA 356 (877)
T ss_pred eehhccCCCCcHHHHH--HHHHHHhhhhhcCCccHHHHHHHHHHHHhhhCHH---HHH-HhHHHHHHHhccCCchhHHHH
Confidence 34444333322221 1467788888899999999999999999864322 111 123457899999999999999
Q ss_pred HHHHHhccC
Q 005044 395 AFALYGLAD 403 (717)
Q Consensus 395 ~~~L~~l~~ 403 (717)
+..|..+..
T Consensus 357 LdLl~gmVs 365 (877)
T KOG1059|consen 357 LDLLYGMVS 365 (877)
T ss_pred HHHHHHHhh
Confidence 999988874
No 104
>KOG4646 consensus Uncharacterized conserved protein, contains ARM repeats [Function unknown]
Probab=98.18 E-value=1.5e-05 Score=65.00 Aligned_cols=132 Identities=20% Similarity=0.232 Sum_probs=105.6
Q ss_pred ChHHHHHHHhccccCCCccchhHHHHHHHHHHHHHhhcCchhhhHHHhcCCcHHHHHhhcCCCHHHHHHHHHHHHHhhcc
Q 005044 158 ALSHLVNLLKRHMDSNCSRAVNSVIRRAADAITNLAHENSSIKTRVRMEGGIPPLVELLEFTDTKVQRAAAGALRTLAFK 237 (717)
Q Consensus 158 ~i~~L~~lL~~~~~~~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~L~~~ 237 (717)
.++.|+.-.....+. +.++....-|.|++. +|.+-..+.+.+.+..++..+..++..+.+.+...|+|+|.
T Consensus 17 Ylq~LV~efq~tt~~-------eakeqv~ANLANFAY-DP~Nys~Lrql~vLdlFvdsl~e~ne~LvefgIgglCNlC~- 87 (173)
T KOG4646|consen 17 YLQHLVDEFQTTTNI-------EAKEQVTANLANFAY-DPINYSHLRQLDVLDLFVDSLEEQNELLVEFGIGGLCNLCL- 87 (173)
T ss_pred HHHHHHHHHHHhccH-------HHHHHHHHHHHhhcc-CcchHHHHHHhhHHHHHHHHhhcccHHHHHHhHHHHHhhcc-
Confidence 345555555444332 778888888889888 67777788888999999999999999999999999999997
Q ss_pred ChhhHHHHHhcCCHHHHHHHHcCCCHHHHHHHHHHHHHhhcCChHHHHHHHHcCChHHHHH
Q 005044 238 NDENKNQIVECNALPTLILMLRSEDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIG 298 (717)
Q Consensus 238 ~~~~~~~~~~~g~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~l~~L~~ 298 (717)
++.+.+.+.+.+++|.++..+.++...+...++.++..++...-..+..+....++..+..
T Consensus 88 d~~n~~~I~ea~g~plii~~lssp~e~tv~sa~~~l~~l~~~~Rt~r~ell~p~Vv~~v~r 148 (173)
T KOG4646|consen 88 DKTNAKFIREALGLPLIIFVLSSPPEITVHSAALFLQLLEFGERTERDELLSPAVVRTVQR 148 (173)
T ss_pred ChHHHHHHHHhcCCceEEeecCCChHHHHHHHHHHHHHhcCcccchhHHhccHHHHHHHHH
Confidence 7899999999999999999999999999999999999997765555555554444443333
No 105
>KOG1242 consensus Protein containing adaptin N-terminal region [Translation, ribosomal structure and biogenesis]
Probab=98.18 E-value=0.0014 Score=68.42 Aligned_cols=341 Identities=16% Similarity=0.117 Sum_probs=202.3
Q ss_pred ChHHHHHhhcCCCCCccccCCCccchHHHhHHHHHHHHhcCChhhHHHHHhCCChHHHHHHHhccccCCCccchhHHHH-
Q 005044 105 AVPALVKHLQAPPTSEADRNLKPFEHEVEKGSAFALGLLAVKPEHQQLIVDNGALSHLVNLLKRHMDSNCSRAVNSVIR- 183 (717)
Q Consensus 105 ~i~~L~~lL~~~~~~~~~~~~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~i~~L~~lL~~~~~~~~~~~~~~~~~- 183 (717)
..+.+.+++..+.. .-+..+.+.++.+..+... ..+.+.+.+..+...+.+..+ ...+
T Consensus 135 ~l~~l~~ll~~~~~------------~~~~~aa~~~ag~v~g~~i-~~~~~~~~l~~l~~ai~dk~~--------~~~re 193 (569)
T KOG1242|consen 135 VLELLLELLTSTKI------------AERAGAAYGLAGLVNGLGI-ESLKEFGFLDNLSKAIIDKKS--------ALNRE 193 (569)
T ss_pred HHHHHHHHhccccH------------HHHhhhhHHHHHHHcCcHH-hhhhhhhHHHHHHHHhcccch--------hhcHH
Confidence 35667777776555 6777888888888744322 345566778888888877655 2233
Q ss_pred HHHHHHHHHhhcCchhhhHHHhcCCc---HHHHHhhcCCCHHHHHHHHHHHHHhhccChhhHHHHHhcCCHHHHHHHHcC
Q 005044 184 RAADAITNLAHENSSIKTRVRMEGGI---PPLVELLEFTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRS 260 (717)
Q Consensus 184 ~a~~~L~~l~~~~~~~~~~~~~~~~i---~~L~~ll~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~g~i~~L~~ll~~ 260 (717)
.+..+....+..-- ...+...+ |.++.-..+....+|..|..+...+...-+...-. -+++.++.-+..
T Consensus 194 ~~~~a~~~~~~~Lg----~~~EPyiv~~lp~il~~~~d~~~~Vr~Aa~~a~kai~~~~~~~aVK----~llpsll~~l~~ 265 (569)
T KOG1242|consen 194 AALLAFEAAQGNLG----PPFEPYIVPILPSILTNFGDKINKVREAAVEAAKAIMRCLSAYAVK----LLLPSLLGSLLE 265 (569)
T ss_pred HHHHHHHHHHHhcC----CCCCchHHhhHHHHHHHhhccchhhhHHHHHHHHHHHHhcCcchhh----HhhhhhHHHHHH
Confidence 23333333332111 11223334 44444445667889988887777765422221111 123444444433
Q ss_pred CCHHHHHHHHHHHHHhhcCChHHHHHHHHcCChHHHHHhhccCChHHHHHHHHHHHHHhcCChhhHHHHHhcCChHHHHH
Q 005044 261 EDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLSSCCSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIE 340 (717)
Q Consensus 261 ~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~l~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~l~~~~~l~~L~~ 340 (717)
..-.....++..++.++...+.. -...-..++|.+.+.|-+..+++++.+..++.++++.- ++.. + ...+|.|++
T Consensus 266 ~kWrtK~aslellg~m~~~ap~q-Ls~~lp~iiP~lsevl~DT~~evr~a~~~~l~~~~svi-dN~d-I--~~~ip~Lld 340 (569)
T KOG1242|consen 266 AKWRTKMASLELLGAMADCAPKQ-LSLCLPDLIPVLSEVLWDTKPEVRKAGIETLLKFGSVI-DNPD-I--QKIIPTLLD 340 (569)
T ss_pred HhhhhHHHHHHHHHHHHHhchHH-HHHHHhHhhHHHHHHHccCCHHHHHHHHHHHHHHHHhh-ccHH-H--HHHHHHHHH
Confidence 34466788888888887665543 44555789999999999999999999999999997521 1111 1 225788888
Q ss_pred HhcCCCHHHHHHHHHHHHHhhcCCCCchhhHhcCC----hHHHHHhhcCCChhHHHHHHHHHHhccCCCcchHHHHHhcC
Q 005044 341 MLQSPDVQLREMSAFALGRLAQDMHNQAGIAHNGG----LVPLLKLLDSKNGSLQHNAAFALYGLADNEDNVADFIRVGG 416 (717)
Q Consensus 341 ~l~~~~~~v~~~a~~~L~~l~~~~~~~~~l~~~~~----l~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~l~~~~~ 416 (717)
.+.++...+.+ +...|..-+- ...++... ++.|.+-+...+..+.+.++.++.|++.--++...+..
T Consensus 341 ~l~dp~~~~~e-~~~~L~~ttF-----V~~V~~psLalmvpiL~R~l~eRst~~kr~t~~IidNm~~LveDp~~lap--- 411 (569)
T KOG1242|consen 341 ALADPSCYTPE-CLDSLGATTF-----VAEVDAPSLALMVPILKRGLAERSTSIKRKTAIIIDNMCKLVEDPKDLAP--- 411 (569)
T ss_pred HhcCcccchHH-HHHhhcceee-----eeeecchhHHHHHHHHHHHHhhccchhhhhHHHHHHHHHHhhcCHHHHhh---
Confidence 88876644432 2333322111 01111122 33344555667888889999999999864333222111
Q ss_pred ccccccchhHHhhhHHHHHHHHHHHHHHhhhchHHHHHHHHhhcchhHHHHHHHHHHhccCCCCCceeeecCCCHHHHHH
Q 005044 417 VQKLQDGEFIVQATKDCVAKTLKRLEEKIHGRVLNHLLYLMRVAEKGVQRRVALALAHLCSPDDQRTIFIDGGGLELLLG 496 (717)
Q Consensus 417 i~~L~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~~~~~~l~~L~~ 496 (717)
+-..++|.|-..+.+..|++|..++++|+.+......... .+.+|-+..
T Consensus 412 ----------------------------fl~~Llp~lk~~~~d~~PEvR~vaarAL~~l~e~~g~~~f---~d~~p~l~e 460 (569)
T KOG1242|consen 412 ----------------------------FLPSLLPGLKENLDDAVPEVRAVAARALGALLERLGEVSF---DDLIPELSE 460 (569)
T ss_pred ----------------------------hHHHHhhHHHHHhcCCChhHHHHHHHHHHHHHHHHHhhcc---cccccHHHH
Confidence 0112566666667777899999999999888655443322 566777877
Q ss_pred HhcCCC-chhhhhhHHHHHHhhhc
Q 005044 497 LLGSTN-PKQQLDGAVALFKLANK 519 (717)
Q Consensus 497 ll~~~~-~~v~~~a~~~l~~L~~~ 519 (717)
.+.+.. ..-+.-++..+.....+
T Consensus 461 ~~~~~k~~~~~~g~aq~l~evl~~ 484 (569)
T KOG1242|consen 461 TLTSEKSLVDRSGAAQDLSEVLAG 484 (569)
T ss_pred hhccchhhhhhHHHhhhHHHHHhc
Confidence 776533 33345556666555543
No 106
>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]
Probab=98.16 E-value=7.2e-05 Score=82.61 Aligned_cols=281 Identities=15% Similarity=0.034 Sum_probs=176.3
Q ss_pred HHHHHHHHHHHhhc--ChhhHHHHHhCCChHHHHHhhcCCCCCccccCCCccchHHHhHHHHHHHHhc----CChhhHHH
Q 005044 79 AAKRATHVLAELAK--NEEVVNWIVEGGAVPALVKHLQAPPTSEADRNLKPFEHEVEKGSAFALGLLA----VKPEHQQL 152 (717)
Q Consensus 79 ~~~~a~~~L~~l~~--~~~~~~~~~~~g~i~~L~~lL~~~~~~~~~~~~~~~~~~v~~~a~~~L~~l~----~~~~~~~~ 152 (717)
.+..|+..|..++. +.+.+. .-++|.++.++.++.. +||..|+.+|..+. +-+..-..
T Consensus 439 tK~~ALeLl~~lS~~i~de~~L----DRVlPY~v~l~~Ds~a------------~Vra~Al~Tlt~~L~~Vr~~~~~dan 502 (1431)
T KOG1240|consen 439 TKLAALELLQELSTYIDDEVKL----DRVLPYFVHLLMDSEA------------DVRATALETLTELLALVRDIPPSDAN 502 (1431)
T ss_pred hHHHHHHHHHHHhhhcchHHHH----hhhHHHHHHHhcCchH------------HHHHHHHHHHHHHHhhccCCCcccch
Confidence 37888998888887 333322 2368999999999888 99999999999877 22333233
Q ss_pred HHhCCChHHHHHHHhccccCCCccchhHHHHHHHHHHHHHhhcCchhhhHHHhcCCcHHHHHhhcCCCHHHHHHHHHHHH
Q 005044 153 IVDNGALSHLVNLLKRHMDSNCSRAVNSVIRRAADAITNLAHENSSIKTRVRMEGGIPPLVELLEFTDTKVQRAAAGALR 232 (717)
Q Consensus 153 ~~~~~~i~~L~~lL~~~~~~~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~ 232 (717)
+...-.+|.|-.++.+.+.. .++..-+..|..|+..-. .+.+.+.-.....++.+++.+ ...
T Consensus 503 iF~eYlfP~L~~l~~d~~~~-------~vRiayAsnla~LA~tA~----rFle~~q~~~~~g~~n~~nse-------t~~ 564 (1431)
T KOG1240|consen 503 IFPEYLFPHLNHLLNDSSAQ-------IVRIAYASNLAQLAKTAY----RFLELTQELRQAGMLNDPNSE-------TAP 564 (1431)
T ss_pred hhHhhhhhhhHhhhccCccc-------eehhhHHhhHHHHHHHHH----HHHHHHHHHHhcccccCcccc-------ccc
Confidence 34444567777777764332 566666677777765211 122111111222233333332 000
Q ss_pred HhhccChhhHHHHHhcCCHHHHHHHHcCCCHHHHHHHHHHHHHhhcCChHHHHHHHHcCChHHHHHhhccCChHHHHHHH
Q 005044 233 TLAFKNDENKNQIVECNALPTLILMLRSEDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLSSCCSESQREAA 312 (717)
Q Consensus 233 ~L~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~l~~L~~ll~~~~~~~~~~a~ 312 (717)
... .+.....+.+ ++-+....+|.++++-|++..+..|.-||.. ..+.-.+.-++..|+..|.+.++.+|..-.
T Consensus 565 ~~~--~~~~~~~L~~-~V~~~v~sLlsd~~~~Vkr~Lle~i~~LC~F---FGk~ksND~iLshLiTfLNDkDw~LR~aFf 638 (1431)
T KOG1240|consen 565 EQN--YNTELQALHH-TVEQMVSSLLSDSPPIVKRALLESIIPLCVF---FGKEKSNDVILSHLITFLNDKDWRLRGAFF 638 (1431)
T ss_pred ccc--cchHHHHHHH-HHHHHHHHHHcCCchHHHHHHHHHHHHHHHH---hhhcccccchHHHHHHHhcCccHHHHHHHH
Confidence 000 1111222222 2334566788888889999888888888632 112222234689999999999998887655
Q ss_pred HHHHHHhcCChhhHHHHHhcCChHHHHHHhcCCCHHHHHHHHHHHHHhhcCCCCchhhHhcCChHHHHHhhcCCChhHHH
Q 005044 313 LLLGQFAATDSDCKVHIVQRGAVRPLIEMLQSPDVQLREMSAFALGRLAQDMHNQAGIAHNGGLVPLLKLLDSKNGSLQH 392 (717)
Q Consensus 313 ~~L~~l~~~~~~~~~~l~~~~~l~~L~~~l~~~~~~v~~~a~~~L~~l~~~~~~~~~l~~~~~l~~L~~ll~~~~~~v~~ 392 (717)
..+..++. -....-++..++|.|.+-|.++++.|...|+.+|..|+...--++.. -..+++....+|-+++.-+|.
T Consensus 639 dsI~gvsi---~VG~rs~seyllPLl~Q~ltD~EE~Viv~aL~~ls~Lik~~ll~K~~-v~~i~~~v~PlL~hPN~WIR~ 714 (1431)
T KOG1240|consen 639 DSIVGVSI---FVGWRSVSEYLLPLLQQGLTDGEEAVIVSALGSLSILIKLGLLRKPA-VKDILQDVLPLLCHPNLWIRR 714 (1431)
T ss_pred hhccceEE---EEeeeeHHHHHHHHHHHhccCcchhhHHHHHHHHHHHHHhcccchHH-HHHHHHhhhhheeCchHHHHH
Confidence 55554432 11122345678899999999999999999999999999865443322 223455566677889999999
Q ss_pred HHHHHHHhccC
Q 005044 393 NAAFALYGLAD 403 (717)
Q Consensus 393 ~a~~~L~~l~~ 403 (717)
.++.+|..+++
T Consensus 715 ~~~~iI~~~~~ 725 (1431)
T KOG1240|consen 715 AVLGIIAAIAR 725 (1431)
T ss_pred HHHHHHHHHHh
Confidence 99999888765
No 107
>KOG1060 consensus Vesicle coat complex AP-3, beta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.13 E-value=0.00088 Score=71.14 Aligned_cols=392 Identities=17% Similarity=0.141 Sum_probs=219.0
Q ss_pred HHhhhhhccccchHHHHHHHHHHHHH-HHHhhcChhhHHHHHhCCChHHHHHhhcCCCCCccccCCCccchHHHhHHHHH
Q 005044 61 AQVNVLNTTFSWLEADRAAAKRATHV-LAELAKNEEVVNWIVEGGAVPALVKHLQAPPTSEADRNLKPFEHEVEKGSAFA 139 (717)
Q Consensus 61 ~l~~~L~~~~~~~~~~~~~~~~a~~~-L~~l~~~~~~~~~~~~~g~i~~L~~lL~~~~~~~~~~~~~~~~~~v~~~a~~~ 139 (717)
.+.++|.+-. |. .+.+|..- +.-++++.+.... .|..++...+.+. +|+...--.
T Consensus 39 dL~~lLdSnk-----d~-~KleAmKRIia~iA~G~dvS~~------Fp~VVKNVaskn~------------EVKkLVyvY 94 (968)
T KOG1060|consen 39 DLKQLLDSNK-----DS-LKLEAMKRIIALIAKGKDVSLL------FPAVVKNVASKNI------------EVKKLVYVY 94 (968)
T ss_pred HHHHHHhccc-----cH-HHHHHHHHHHHHHhcCCcHHHH------HHHHHHHhhccCH------------HHHHHHHHH
Confidence 4555665541 22 35666654 4445666554333 5888888887777 999988888
Q ss_pred HHHhc-CChhhHHHHHhCCChHHHHHHHhccccCCCccchhHHHHHHHHHHHHHhhcCchhhhHHHhcCCcHHHHHhhcC
Q 005044 140 LGLLA-VKPEHQQLIVDNGALSHLVNLLKRHMDSNCSRAVNSVIRRAADAITNLAHENSSIKTRVRMEGGIPPLVELLEF 218 (717)
Q Consensus 140 L~~l~-~~~~~~~~~~~~~~i~~L~~lL~~~~~~~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~ 218 (717)
|...+ .+++.. .=.|..+.+-|++.++ .++..|+++|..+=. .++..-.+-++-+...+
T Consensus 95 LlrYAEeqpdLA-----LLSIntfQk~L~DpN~--------LiRasALRvlSsIRv-------p~IaPI~llAIk~~~~D 154 (968)
T KOG1060|consen 95 LLRYAEEQPDLA-----LLSINTFQKALKDPNQ--------LIRASALRVLSSIRV-------PMIAPIMLLAIKKAVTD 154 (968)
T ss_pred HHHHhhcCCCce-----eeeHHHHHhhhcCCcH--------HHHHHHHHHHHhcch-------hhHHHHHHHHHHHHhcC
Confidence 88888 555432 1236778888888776 888888888775432 22211123344556678
Q ss_pred CCHHHHHHHHHHHHHhhccChhhHHHHHhcCCHHHHHHHHcCCCHHHHHHHHHHHHHhhcCChHHHHHHHHcCChHHHHH
Q 005044 219 TDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSEDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIG 298 (717)
Q Consensus 219 ~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~l~~L~~ 298 (717)
+.+-||..|+.++-.|=.-+++...++ ++.+-.+|.+.++.|.-.|+.+.-.+|-..- ..+ .+-...+..
T Consensus 155 ~s~yVRk~AA~AIpKLYsLd~e~k~qL-----~e~I~~LLaD~splVvgsAv~AF~evCPerl---dLI--HknyrklC~ 224 (968)
T KOG1060|consen 155 PSPYVRKTAAHAIPKLYSLDPEQKDQL-----EEVIKKLLADRSPLVVGSAVMAFEEVCPERL---DLI--HKNYRKLCR 224 (968)
T ss_pred CcHHHHHHHHHhhHHHhcCChhhHHHH-----HHHHHHHhcCCCCcchhHHHHHHHHhchhHH---HHh--hHHHHHHHh
Confidence 899999999999999976566655543 4567778899999999999999888863321 111 223344444
Q ss_pred hhccCChHHHHHHHHHHHHHhcC---Chhh---------------------HHHHHhcC----ChHHHHHHhcCCCHHHH
Q 005044 299 LLSSCCSESQREAALLLGQFAAT---DSDC---------------------KVHIVQRG----AVRPLIEMLQSPDVQLR 350 (717)
Q Consensus 299 ll~~~~~~~~~~a~~~L~~l~~~---~~~~---------------------~~~l~~~~----~l~~L~~~l~~~~~~v~ 350 (717)
++.+-+.=-+.-....|..-|.. .|.. +..+.... +++..-.++.+.++.+.
T Consensus 225 ll~dvdeWgQvvlI~mL~RYAR~~l~~P~~~~~~~e~n~~~~~~~~~~~~~~~P~~~d~D~~lLL~stkpLl~S~n~sVV 304 (968)
T KOG1060|consen 225 LLPDVDEWGQVVLINMLTRYARHQLPDPTVVDSSLEDNGRSCNLKDKYNEIRTPYVNDPDLKLLLQSTKPLLQSRNPSVV 304 (968)
T ss_pred hccchhhhhHHHHHHHHHHHHHhcCCCccccccccccCcccccccccccccCCCcccCccHHHHHHhccHHHhcCCcHHH
Confidence 44432211111122222222211 0100 00011111 12333345567888999
Q ss_pred HHHHHHHHHhhcCCCCchhhHhcCChHHHHHhhcCCChhHHHHHHHHHHhccCC-----------------CcchHHHHH
Q 005044 351 EMSAFALGRLAQDMHNQAGIAHNGGLVPLLKLLDSKNGSLQHNAAFALYGLADN-----------------EDNVADFIR 413 (717)
Q Consensus 351 ~~a~~~L~~l~~~~~~~~~l~~~~~l~~L~~ll~~~~~~v~~~a~~~L~~l~~~-----------------~~~~~~l~~ 413 (717)
.+++.++++++-..+ ...++.+|+++|.+.. +++...+..+..++.. +.....++.
T Consensus 305 mA~aql~y~lAP~~~------~~~i~kaLvrLLrs~~-~vqyvvL~nIa~~s~~~~~lF~P~lKsFfv~ssDp~~vk~lK 377 (968)
T KOG1060|consen 305 MAVAQLFYHLAPKNQ------VTKIAKALVRLLRSNR-EVQYVVLQNIATISIKRPTLFEPHLKSFFVRSSDPTQVKILK 377 (968)
T ss_pred HHHHhHHHhhCCHHH------HHHHHHHHHHHHhcCC-cchhhhHHHHHHHHhcchhhhhhhhhceEeecCCHHHHHHHH
Confidence 999999999985321 1234667777775432 4444444444444311 111111222
Q ss_pred hcCccccccc-----------hhHHhhhHHHHHHHHHHHHH------HhhhchHHHHHHHHhhcchhHHHHHHHHHHhcc
Q 005044 414 VGGVQKLQDG-----------EFIVQATKDCVAKTLKRLEE------KIHGRVLNHLLYLMRVAEKGVQRRVALALAHLC 476 (717)
Q Consensus 414 ~~~i~~L~~~-----------~~~~~~~~~~~~~~~~~l~~------~~~~~~~~~L~~ll~~~~~~v~~~a~~aL~~l~ 476 (717)
-.++..|.+. .+...+.+.-++.+++.+.. .+...++..|+.++.+.+..|..+++..|..+.
T Consensus 378 leiLs~La~esni~~ILrE~q~YI~s~d~~faa~aV~AiGrCA~~~~sv~~tCL~gLv~Llsshde~Vv~eaV~vIk~Ll 457 (968)
T KOG1060|consen 378 LEILSNLANESNISEILRELQTYIKSSDRSFAAAAVKAIGRCASRIGSVTDTCLNGLVQLLSSHDELVVAEAVVVIKRLL 457 (968)
T ss_pred HHHHHHHhhhccHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHhhCchhhHHHHHHHHHHhcccchhHHHHHHHHHHHH
Confidence 2222222210 11111222233334444433 246678999999999999999999999999887
Q ss_pred CCCCCceeeecCCCHHHHHHHhcC-CCchhhhhhHHHHHHhh
Q 005044 477 SPDDQRTIFIDGGGLELLLGLLGS-TNPKQQLDGAVALFKLA 517 (717)
Q Consensus 477 ~~~~~~~~~~~~~~l~~L~~ll~~-~~~~v~~~a~~~l~~L~ 517 (717)
.....+ ....+..|.+++++ ..+..|....|.+...+
T Consensus 458 q~~p~~----h~~ii~~La~lldti~vp~ARA~IiWLige~~ 495 (968)
T KOG1060|consen 458 QKDPAE----HLEILFQLARLLDTILVPAARAGIIWLIGEYC 495 (968)
T ss_pred hhChHH----HHHHHHHHHHHhhhhhhhhhhceeeeeehhhh
Confidence 654322 11246666777754 33333434444443333
No 108
>COG5181 HSH155 U2 snRNP spliceosome subunit [RNA processing and modification]
Probab=98.08 E-value=2.8e-05 Score=79.52 Aligned_cols=262 Identities=15% Similarity=0.112 Sum_probs=171.0
Q ss_pred CHHHHHHHHcCCCHHHHHHHHHHHHHhhcCChHHH--HHHHHcCChHHHHHhhccCChHHHHHHHHHHHHHhcCChhhHH
Q 005044 250 ALPTLILMLRSEDSAIHYEAVGVIGNLVHSSPNIK--KEVLAAGALQPVIGLLSSCCSESQREAALLLGQFAATDSDCKV 327 (717)
Q Consensus 250 ~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~--~~~~~~g~l~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~ 327 (717)
++..++.+|++..+.+|..|+...+.++.--..+. +.+...| ..|.+-+....+++.-..+.+++.+.+...-...
T Consensus 605 ivStiL~~L~~k~p~vR~~aadl~~sl~~vlk~c~e~~~l~klg--~iLyE~lge~ypEvLgsil~Ai~~I~sv~~~~~m 682 (975)
T COG5181 605 IVSTILKLLRSKPPDVRIRAADLMGSLAKVLKACGETKELAKLG--NILYENLGEDYPEVLGSILKAICSIYSVHRFRSM 682 (975)
T ss_pred HHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHhcchHHHHHHHh--HHHHHhcCcccHHHHHHHHHHHHHHhhhhccccc
Confidence 35677888999999999999999888854222221 2222222 3466777778888888777777777532111111
Q ss_pred HHHhcCChHHHHHHhcCCCHHHHHHHHHHHHHhhcCCCCc---hhhHhcCChHHHHHhhcCCChhHHHHHHHHHHhccCC
Q 005044 328 HIVQRGAVRPLIEMLQSPDVQLREMSAFALGRLAQDMHNQ---AGIAHNGGLVPLLKLLDSKNGSLQHNAAFALYGLADN 404 (717)
Q Consensus 328 ~l~~~~~l~~L~~~l~~~~~~v~~~a~~~L~~l~~~~~~~---~~l~~~~~l~~L~~ll~~~~~~v~~~a~~~L~~l~~~ 404 (717)
..=-.|++|.|..+|++....+..+....++.+|...+.. .++.. +--.|+++|.+-+.+++++|...++.+++.
T Consensus 683 qpPi~~ilP~ltPILrnkh~Kv~~nti~lvg~I~~~~peyi~~rEWMR--IcfeLvd~Lks~nKeiRR~A~~tfG~Is~a 760 (975)
T COG5181 683 QPPISGILPSLTPILRNKHQKVVANTIALVGTICMNSPEYIGVREWMR--ICFELVDSLKSWNKEIRRNATETFGCISRA 760 (975)
T ss_pred CCchhhccccccHhhhhhhHHHhhhHHHHHHHHHhcCcccCCHHHHHH--HHHHHHHHHHHhhHHHHHhhhhhhhhHHhh
Confidence 1112679999999999999999999999999999755432 22222 233488899999999999999999999864
Q ss_pred CcchHHHHHhcCcccccc-chhHHhhhHHHHHHHHHHHHHHh-hhchHHHHHHHHhhcchhHHHHHHHHHHhccCCCCCc
Q 005044 405 EDNVADFIRVGGVQKLQD-GEFIVQATKDCVAKTLKRLEEKI-HGRVLNHLLYLMRVAEKGVQRRVALALAHLCSPDDQR 482 (717)
Q Consensus 405 ~~~~~~l~~~~~i~~L~~-~~~~~~~~~~~~~~~~~~l~~~~-~~~~~~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~ 482 (717)
-.....+ ..|++ +.......+-|-.-++....+.+ -..++|.|..=-..++..||.-.+++++.+-....+.
T Consensus 761 iGPqdvL------~~LlnnLkvqeRq~RvctsvaI~iVae~cgpfsVlP~lm~dY~TPe~nVQnGvLkam~fmFeyig~~ 834 (975)
T COG5181 761 IGPQDVL------DILLNNLKVQERQQRVCTSVAISIVAEYCGPFSVLPTLMSDYETPEANVQNGVLKAMCFMFEYIGQA 834 (975)
T ss_pred cCHHHHH------HHHHhcchHHHHHhhhhhhhhhhhhHhhcCchhhHHHHHhcccCchhHHHHhHHHHHHHHHHHHHHH
Confidence 3322211 12222 11112222334333333333322 3357777777777889999999999999886543322
Q ss_pred eeeecCCCHHHHHHHhcCCCchhhhhhHHHHHHhhhccc
Q 005044 483 TIFIDGGGLELLLGLLGSTNPKQQLDGAVALFKLANKAT 521 (717)
Q Consensus 483 ~~~~~~~~l~~L~~ll~~~~~~v~~~a~~~l~~L~~~~~ 521 (717)
..=.--...|.|...+.+.++..|..|...+.+|+-+..
T Consensus 835 s~dYvy~itPlleDAltDrD~vhRqta~nvI~Hl~Lnc~ 873 (975)
T COG5181 835 SLDYVYSITPLLEDALTDRDPVHRQTAMNVIRHLVLNCP 873 (975)
T ss_pred HHHHHHHhhHHHHhhhcccchHHHHHHHHHHHHHhcCCC
Confidence 111112356778888888999999999999998887644
No 109
>COG1413 FOG: HEAT repeat [Energy production and conversion]
Probab=98.06 E-value=0.0012 Score=67.77 Aligned_cols=187 Identities=32% Similarity=0.388 Sum_probs=140.8
Q ss_pred CChHHHHHHHhccccCCCccchhHHHHHHHHHHHHHhhcCchhhhHHHhcCCcHHHHHhhcCCCHHHHHHHHHHHHHhhc
Q 005044 157 GALSHLVNLLKRHMDSNCSRAVNSVIRRAADAITNLAHENSSIKTRVRMEGGIPPLVELLEFTDTKVQRAAAGALRTLAF 236 (717)
Q Consensus 157 ~~i~~L~~lL~~~~~~~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~L~~ 236 (717)
..++.+..++.+.+. .++..+...+..+-. ...++.+..++.+.++.+|..+..+|..+-.
T Consensus 43 ~~~~~~~~~l~~~~~--------~vr~~aa~~l~~~~~-----------~~av~~l~~~l~d~~~~vr~~a~~aLg~~~~ 103 (335)
T COG1413 43 EAADELLKLLEDEDL--------LVRLSAAVALGELGS-----------EEAVPLLRELLSDEDPRVRDAAADALGELGD 103 (335)
T ss_pred hhHHHHHHHHcCCCH--------HHHHHHHHHHhhhch-----------HHHHHHHHHHhcCCCHHHHHHHHHHHHccCC
Confidence 347778888887744 777777777554332 2357899999999999999999998887753
Q ss_pred cChhhHHHHHhcCCHHHHHHHHc-CCCHHHHHHHHHHHHHhhcCChHHHHHHHHcCChHHHHHhhccCCh----------
Q 005044 237 KNDENKNQIVECNALPTLILMLR-SEDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLSSCCS---------- 305 (717)
Q Consensus 237 ~~~~~~~~~~~~g~i~~L~~ll~-~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~l~~L~~ll~~~~~---------- 305 (717)
+ ..++.++.++. +++..+|..+.++|+.+- +.. .+..++..+.+...
T Consensus 104 --~---------~a~~~li~~l~~d~~~~vR~~aa~aL~~~~--~~~---------a~~~l~~~l~~~~~~~a~~~~~~~ 161 (335)
T COG1413 104 --P---------EAVPPLVELLENDENEGVRAAAARALGKLG--DER---------ALDPLLEALQDEDSGSAAAALDAA 161 (335)
T ss_pred --h---------hHHHHHHHHHHcCCcHhHHHHHHHHHHhcC--chh---------hhHHHHHHhccchhhhhhhhccch
Confidence 2 25788888888 689999999999999983 221 26677777776542
Q ss_pred --HHHHHHHHHHHHHhcCChhhHHHHHhcCChHHHHHHhcCCCHHHHHHHHHHHHHhhcCCCCchhhHhcCChHHHHHhh
Q 005044 306 --ESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQSPDVQLREMSAFALGRLAQDMHNQAGIAHNGGLVPLLKLL 383 (717)
Q Consensus 306 --~~~~~a~~~L~~l~~~~~~~~~~l~~~~~l~~L~~~l~~~~~~v~~~a~~~L~~l~~~~~~~~~l~~~~~l~~L~~ll 383 (717)
.++..+...+..+- ....++.+...+.+.+..+|..+..+|..+.... ..+...+...+
T Consensus 162 ~~~~r~~a~~~l~~~~-----------~~~~~~~l~~~l~~~~~~vr~~Aa~aL~~~~~~~--------~~~~~~l~~~~ 222 (335)
T COG1413 162 LLDVRAAAAEALGELG-----------DPEAIPLLIELLEDEDADVRRAAASALGQLGSEN--------VEAADLLVKAL 222 (335)
T ss_pred HHHHHHHHHHHHHHcC-----------ChhhhHHHHHHHhCchHHHHHHHHHHHHHhhcch--------hhHHHHHHHHh
Confidence 34555555555542 3346788999999999999999999999988754 33556788889
Q ss_pred cCCChhHHHHHHHHHHhccC
Q 005044 384 DSKNGSLQHNAAFALYGLAD 403 (717)
Q Consensus 384 ~~~~~~v~~~a~~~L~~l~~ 403 (717)
.+.++.++..++.++..+-.
T Consensus 223 ~~~~~~vr~~~~~~l~~~~~ 242 (335)
T COG1413 223 SDESLEVRKAALLALGEIGD 242 (335)
T ss_pred cCCCHHHHHHHHHHhcccCc
Confidence 99999999999999987764
No 110
>KOG2734 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.03 E-value=0.0033 Score=62.45 Aligned_cols=267 Identities=18% Similarity=0.170 Sum_probs=192.7
Q ss_pred HHHHHHHHHhhcChhhHHHHHhCCChHHHHHhhcCCCCCccccCCCccchHHHhHHHHHHHHhcCC------h----hhH
Q 005044 81 KRATHVLAELAKNEEVVNWIVEGGAVPALVKHLQAPPTSEADRNLKPFEHEVEKGSAFALGLLAVK------P----EHQ 150 (717)
Q Consensus 81 ~~a~~~L~~l~~~~~~~~~~~~~g~i~~L~~lL~~~~~~~~~~~~~~~~~~v~~~a~~~L~~l~~~------~----~~~ 150 (717)
-..++.+.-++.-|+.-..+++.++++.|+.||.+.+. +|-...+..|..+.+. . ..-
T Consensus 102 hd~IQ~mhvlAt~PdLYp~lveln~V~slL~LLgHeNt------------DI~iavvdLLqELTD~Dv~~es~egAevLi 169 (536)
T KOG2734|consen 102 HDIIQEMHVLATMPDLYPILVELNAVQSLLELLGHENT------------DIAIAVVDLLQELTDEDVLYESEEGAEVLI 169 (536)
T ss_pred HHHHHHHHhhhcChHHHHHHHHhccHHHHHHHhcCCCc------------hhHHHHHHHHHHhhhhcccccccccHHHHH
Confidence 34466666677778887788999999999999999999 8889999999999832 1 234
Q ss_pred HHHHhCCChHHHHHHHhccccCCCccchhHHHHHHHHHHHHHhhcCchhhhHHHhcCCcHHHHHhhcC--CCHHHHHHHH
Q 005044 151 QLIVDNGALSHLVNLLKRHMDSNCSRAVNSVIRRAADAITNLAHENSSIKTRVRMEGGIPPLVELLEF--TDTKVQRAAA 228 (717)
Q Consensus 151 ~~~~~~~~i~~L~~lL~~~~~~~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~--~~~~v~~~a~ 228 (717)
+++++.++++.|++-+.+-+.+.... ..-...++.++-|+..-.+.....+++.|.+..|+.-+.. +...-...|.
T Consensus 170 daLvdg~vlaLLvqnveRLdEsvkee--a~gv~~~L~vveNlv~~r~~~~~~~~e~~ll~WLL~rl~~k~~f~aNk~Yas 247 (536)
T KOG2734|consen 170 DALVDGQVLALLVQNVERLDESVKEE--ADGVHNTLAVVENLVEVRPAICTEIVEQGLLSWLLKRLKGKAAFDANKQYAS 247 (536)
T ss_pred HHHHhccHHHHHHHHHHHhhhcchhh--hhhhHHHHHHHHHHHhccHHHHHHHHHhhHHHHHHHHHhcccCcchhHHHHH
Confidence 67788899999998887654321110 0344567888889998888888888888888777764433 4456778888
Q ss_pred HHHHHhhccChhhHHHHHhcCCHHHHHHHHc-----C----CCHHHHHHHHHHHHHhhcCChHHHHHHHHcCChHHHHHh
Q 005044 229 GALRTLAFKNDENKNQIVECNALPTLILMLR-----S----EDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGL 299 (717)
Q Consensus 229 ~~L~~L~~~~~~~~~~~~~~g~i~~L~~ll~-----~----~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~l~~L~~l 299 (717)
.+|.-+..++.+++.....-.++..+++-+. + +..+...+...+|+.+... +..+..+....++....-+
T Consensus 248 EiLaillq~s~e~~~~~~~l~GiD~lL~~la~yk~~dP~~~~E~EmmeNLFdcLCs~lm~-~~nr~~Fl~~EGlqLm~Lm 326 (536)
T KOG2734|consen 248 EILAILLQNSDENRKLLGPLDGIDVLLRQLAVYKRHDPATVDEEEMMENLFDCLCSLLMA-PANRERFLKGEGLQLMNLM 326 (536)
T ss_pred HHHHHHhccCchhhhhhcCcccHHHHHhhcchhhccCCCCcCHHHHHHHHHHHHHHHhcC-hhhhhhhhccccHHHHHHH
Confidence 9999998877778888888888998887664 2 1346777888888887654 5667888888888766666
Q ss_pred hccCChHHHHHHHHHHHHHhcCCh--hhHHHHHhcCChHHHHHHhc-CC---------CHHHHHHHHHHHHHhhcC
Q 005044 300 LSSCCSESQREAALLLGQFAATDS--DCKVHIVQRGAVRPLIEMLQ-SP---------DVQLREMSAFALGRLAQD 363 (717)
Q Consensus 300 l~~~~~~~~~~a~~~L~~l~~~~~--~~~~~l~~~~~l~~L~~~l~-~~---------~~~v~~~a~~~L~~l~~~ 363 (717)
++. ....+..+..+|.....+.+ .++..+++..++..+..+.- .+ ....-+..+..|+.+-++
T Consensus 327 lr~-Kk~sr~SalkvLd~am~g~~gt~~C~kfVe~lGLrtiF~~FMk~p~k~~~~~~t~~e~eEhv~siiaSl~~~ 401 (536)
T KOG2734|consen 327 LRE-KKVSRGSALKVLDHAMFGPEGTPNCNKFVEILGLRTIFPLFMKTPLKRKKRKISADEHEEHVCSILASLLRN 401 (536)
T ss_pred HHH-HHHhhhhHHHHHHHHHhCCCchHHHHHHHHHHhHHHHHHHHhhCccchhcccCcHHHHHHHHHHHHHHHHHh
Confidence 665 44566778888888776655 66777888777777666542 21 234555666666666553
No 111
>COG1413 FOG: HEAT repeat [Energy production and conversion]
Probab=98.02 E-value=0.0035 Score=64.39 Aligned_cols=214 Identities=33% Similarity=0.386 Sum_probs=158.7
Q ss_pred CChHHHHHhhcCCCCCccccCCCccchHHHhHHHHHHHHhcCChhhHHHHHhCCChHHHHHHHhccccCCCccchhHHHH
Q 005044 104 GAVPALVKHLQAPPTSEADRNLKPFEHEVEKGSAFALGLLAVKPEHQQLIVDNGALSHLVNLLKRHMDSNCSRAVNSVIR 183 (717)
Q Consensus 104 g~i~~L~~lL~~~~~~~~~~~~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~i~~L~~lL~~~~~~~~~~~~~~~~~ 183 (717)
..++.+++++.+.+. .+|..+...++.+... .+++.+..++.+.+. .++.
T Consensus 43 ~~~~~~~~~l~~~~~------------~vr~~aa~~l~~~~~~----------~av~~l~~~l~d~~~--------~vr~ 92 (335)
T COG1413 43 EAADELLKLLEDEDL------------LVRLSAAVALGELGSE----------EAVPLLRELLSDEDP--------RVRD 92 (335)
T ss_pred hhHHHHHHHHcCCCH------------HHHHHHHHHHhhhchH----------HHHHHHHHHhcCCCH--------HHHH
Confidence 357888889988755 8999999997776533 347889999988776 8888
Q ss_pred HHHHHHHHHhhcCchhhhHHHhcCCcHHHHHhhc-CCCHHHHHHHHHHHHHhhccChhhHHHHHhcCCHHHHHHHHcCCC
Q 005044 184 RAADAITNLAHENSSIKTRVRMEGGIPPLVELLE-FTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSED 262 (717)
Q Consensus 184 ~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~-~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~g~i~~L~~ll~~~~ 262 (717)
.++.+|+.+-. ...++.++.++. +.+..+|..+.++|..+-. . ..+..++..+.+..
T Consensus 93 ~a~~aLg~~~~-----------~~a~~~li~~l~~d~~~~vR~~aa~aL~~~~~--~---------~a~~~l~~~l~~~~ 150 (335)
T COG1413 93 AAADALGELGD-----------PEAVPPLVELLENDENEGVRAAAARALGKLGD--E---------RALDPLLEALQDED 150 (335)
T ss_pred HHHHHHHccCC-----------hhHHHHHHHHHHcCCcHhHHHHHHHHHHhcCc--h---------hhhHHHHHHhccch
Confidence 89887776532 225678888888 6899999999999999874 1 23666777777655
Q ss_pred H------------HHHHHHHHHHHHhhcCChHHHHHHHHcCChHHHHHhhccCChHHHHHHHHHHHHHhcCChhhHHHHH
Q 005044 263 S------------AIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLSSCCSESQREAALLLGQFAATDSDCKVHIV 330 (717)
Q Consensus 263 ~------------~v~~~a~~~L~~l~~~~~~~~~~~~~~g~l~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~l~ 330 (717)
. .++..+...++.+- + ...++.+...+.+....++..++.+|+.+....
T Consensus 151 ~~~a~~~~~~~~~~~r~~a~~~l~~~~--~---------~~~~~~l~~~l~~~~~~vr~~Aa~aL~~~~~~~-------- 211 (335)
T COG1413 151 SGSAAAALDAALLDVRAAAAEALGELG--D---------PEAIPLLIELLEDEDADVRRAAASALGQLGSEN-------- 211 (335)
T ss_pred hhhhhhhccchHHHHHHHHHHHHHHcC--C---------hhhhHHHHHHHhCchHHHHHHHHHHHHHhhcch--------
Confidence 2 35555666655552 1 235788899999999999999999999986433
Q ss_pred hcCChHHHHHHhcCCCHHHHHHHHHHHHHhhcCCCCchhhHhcCChHHHHHhhcCCChhHHHHHHHHHH
Q 005044 331 QRGAVRPLIEMLQSPDVQLREMSAFALGRLAQDMHNQAGIAHNGGLVPLLKLLDSKNGSLQHNAAFALY 399 (717)
Q Consensus 331 ~~~~l~~L~~~l~~~~~~v~~~a~~~L~~l~~~~~~~~~l~~~~~l~~L~~ll~~~~~~v~~~a~~~L~ 399 (717)
..+.+.+...+.+.+..+|..++.+|+.+-.. .....+...+.+.++.++..+...+.
T Consensus 212 -~~~~~~l~~~~~~~~~~vr~~~~~~l~~~~~~----------~~~~~l~~~l~~~~~~~~~~~~~~~~ 269 (335)
T COG1413 212 -VEAADLLVKALSDESLEVRKAALLALGEIGDE----------EAVDALAKALEDEDVILALLAAAALG 269 (335)
T ss_pred -hhHHHHHHHHhcCCCHHHHHHHHHHhcccCcc----------hhHHHHHHHHhccchHHHHHHHHHhc
Confidence 33557788889999999999988888776432 24666778888877777666665555
No 112
>KOG2259 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.99 E-value=0.00015 Score=75.15 Aligned_cols=250 Identities=16% Similarity=0.140 Sum_probs=139.2
Q ss_pred HHHhhcCCCHHHHHHHHHHHHHhhccChhhHHHHHhcCCHHHHHHHHcCCCHHHHHHHHHHHHHhhcCCh-----HHHHH
Q 005044 212 LVELLEFTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSEDSAIHYEAVGVIGNLVHSSP-----NIKKE 286 (717)
Q Consensus 212 L~~ll~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~-----~~~~~ 286 (717)
+..+..+.+..|+..|+..|..|..+..- .+. .....++++++++.+||..|+..++-.....+ .....
T Consensus 203 l~~~~~~~D~~Vrt~A~eglL~L~eg~kL-~~~-----~Y~~A~~~lsD~~e~VR~aAvqlv~v~gn~~p~~~e~e~~e~ 276 (823)
T KOG2259|consen 203 LIYLEHDQDFRVRTHAVEGLLALSEGFKL-SKA-----CYSRAVKHLSDDYEDVRKAAVQLVSVWGNRCPAPLERESEEE 276 (823)
T ss_pred HHHHhcCCCcchHHHHHHHHHhhcccccc-cHH-----HHHHHHHHhcchHHHHHHHHHHHHHHHHhcCCCcccchhhhh
Confidence 67777778888888888888888753211 111 34567889999999999998766655533221 11111
Q ss_pred HHHcCChHHHHHhhccCChHHHHHHHHHHHHHhcCChhhHHHHHhcCChHHHHHHhcC-CCHHHHHHHHHHHHHhhcC--
Q 005044 287 VLAAGALQPVIGLLSSCCSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQS-PDVQLREMSAFALGRLAQD-- 363 (717)
Q Consensus 287 ~~~~g~l~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~l~~~~~l~~L~~~l~~-~~~~v~~~a~~~L~~l~~~-- 363 (717)
-....++..+...+.+.+..+|..|+.+|+.+-...++.....++..++..+-..-.. ..+.. ...=+.++.+
T Consensus 277 kl~D~aF~~vC~~v~D~sl~VRV~AaK~lG~~~~vSee~i~QTLdKKlms~lRRkr~ahkrpk~----l~s~GewSsGk~ 352 (823)
T KOG2259|consen 277 KLKDAAFSSVCRAVRDRSLSVRVEAAKALGEFEQVSEEIIQQTLDKKLMSRLRRKRTAHKRPKA----LYSSGEWSSGKE 352 (823)
T ss_pred hhHHHHHHHHHHHHhcCceeeeehHHHHhchHHHhHHHHHHHHHHHHHhhhhhhhhhcccchHH----HHhcCCcccCcc
Confidence 1223456777888899999999999999998865445554444444444322222111 11111 1111111111
Q ss_pred ----------CCCchhhHhcCChHHHHHhhcCCChhHHHHHHHHHHhccCCCcchHHHHHhcCccccccchhH-HhhhHH
Q 005044 364 ----------MHNQAGIAHNGGLVPLLKLLDSKNGSLQHNAAFALYGLADNEDNVADFIRVGGVQKLQDGEFI-VQATKD 432 (717)
Q Consensus 364 ----------~~~~~~l~~~~~l~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~l~~~~~i~~L~~~~~~-~~~~~~ 432 (717)
++....++..|+-..++.-+.+.-.+||.+|...++.|+.+...-.. ..+..|+++..+ ...++.
T Consensus 353 ~~advpsee~d~~~~siI~sGACGA~VhGlEDEf~EVR~AAV~Sl~~La~ssP~FA~----~aldfLvDMfNDE~~~VRL 428 (823)
T KOG2259|consen 353 WNADVPSEEDDEEEESIIPSGACGALVHGLEDEFYEVRRAAVASLCSLATSSPGFAV----RALDFLVDMFNDEIEVVRL 428 (823)
T ss_pred ccccCchhhccccccccccccccceeeeechHHHHHHHHHHHHHHHHHHcCCCCcHH----HHHHHHHHHhccHHHHHHH
Confidence 11223477778877888778777789999999999999875433110 011112221111 111121
Q ss_pred HHHHHHHHHHH--HhhhchHHHHHHHHhhcchhHHHHHHHHHHhc
Q 005044 433 CVAKTLKRLEE--KIHGRVLNHLLYLMRVAEKGVQRRVALALAHL 475 (717)
Q Consensus 433 ~~~~~~~~l~~--~~~~~~~~~L~~ll~~~~~~v~~~a~~aL~~l 475 (717)
-...++..+.. .+.++.++.++..|.+.++++|.+.-..|++.
T Consensus 429 ~ai~aL~~Is~~l~i~eeql~~il~~L~D~s~dvRe~l~elL~~~ 473 (823)
T KOG2259|consen 429 KAIFALTMISVHLAIREEQLRQILESLEDRSVDVREALRELLKNA 473 (823)
T ss_pred HHHHHHHHHHHHheecHHHHHHHHHHHHhcCHHHHHHHHHHHHhc
Confidence 12222222222 13445566666666666666665555555443
No 113
>KOG1789 consensus Endocytosis protein RME-8, contains DnaJ domain [Intracellular trafficking, secretion, and vesicular transport; Posttranslational modification, protein turnover, chaperones]
Probab=97.95 E-value=0.0031 Score=68.99 Aligned_cols=137 Identities=24% Similarity=0.358 Sum_probs=105.0
Q ss_pred HHHHHHHHHHHHHhhcCchhhhHHHh----cCCcHHHHHhhcC-CCHHHHHHHHHHHHHhhccChhhHHHHHhcCCHHHH
Q 005044 180 SVIRRAADAITNLAHENSSIKTRVRM----EGGIPPLVELLEF-TDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTL 254 (717)
Q Consensus 180 ~~~~~a~~~L~~l~~~~~~~~~~~~~----~~~i~~L~~ll~~-~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~g~i~~L 254 (717)
+-...++.+|.|+...++.....+.. .|..+.+...+.. .++.++..|+.++..++. +.+....++..|.+..|
T Consensus 1740 ~~v~m~LtAL~Nli~~nPdlasvfgSe~~lig~F~l~~~~lr~~~~~~iq~LaL~Vi~~~Ta-n~~Cv~~~a~~~vL~~L 1818 (2235)
T KOG1789|consen 1740 TKVLMTLTALANLVSANPDLASVFGSEILLIGNFPLLITYLRCRKHPKLQILALQVILLATA-NKECVTDLATCNVLTTL 1818 (2235)
T ss_pred HHHHHHHHHHHHHHhhCcchhhhccchhhhhcccHHHHHHHHHcCCchHHHHHHHHHHHHhc-ccHHHHHHHhhhHHHHH
Confidence 45677899999999988866544332 3566777777754 678999999999998886 78888899999999999
Q ss_pred HHHHcCCCHHHHHHHHHHHHHhhcCChHHHHHHHHcCChHHHHHhhc-cCChHHHHHHHHHHHHHh
Q 005044 255 ILMLRSEDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLS-SCCSESQREAALLLGQFA 319 (717)
Q Consensus 255 ~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~l~~L~~ll~-~~~~~~~~~a~~~L~~l~ 319 (717)
+.+|.+ -+..|..++.+|..+++. ........+.|++..+..++- +.++..|.+++..++.+.
T Consensus 1819 L~lLHS-~PS~R~~vL~vLYAL~S~-~~i~keA~~hg~l~yil~~~c~~~~~QqRAqaAeLlaKl~ 1882 (2235)
T KOG1789|consen 1819 LTLLHS-QPSMRARVLDVLYALSSN-GQIGKEALEHGGLMYILSILCLTNSDQQRAQAAELLAKLQ 1882 (2235)
T ss_pred HHHHhc-ChHHHHHHHHHHHHHhcC-cHHHHHHHhcCchhhhhHHHhccCcHHHHHHHHHHHHHhh
Confidence 998865 678899999999999755 555566677777777776664 345677777777777763
No 114
>PF10165 Ric8: Guanine nucleotide exchange factor synembryn; InterPro: IPR019318 Ric8 is involved in the EGL-30 neurotransmitter signalling pathway []. It is a guanine nucleotide exchange factor [] that regulates neurotransmitter secretion.
Probab=97.94 E-value=0.00063 Score=71.69 Aligned_cols=253 Identities=18% Similarity=0.142 Sum_probs=146.4
Q ss_pred HHHHHHHHHHHHHhhcCchhhhHHHhcCCcHHHHHhhcCC-----CHHHHHHHHHHHHHhhccChhhHHHHHhc-CCHHH
Q 005044 180 SVIRRAADAITNLAHENSSIKTRVRMEGGIPPLVELLEFT-----DTKVQRAAAGALRTLAFKNDENKNQIVEC-NALPT 253 (717)
Q Consensus 180 ~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~-----~~~v~~~a~~~L~~L~~~~~~~~~~~~~~-g~i~~ 253 (717)
.+...|+.+|+|+...++..|..+.+.|+.+.++..++.. ++++....++.|.-++....+.+..+++. +++..
T Consensus 47 ~v~~EALKCL~N~lf~s~~aR~~~~~~~~~~~l~~~Lk~~~~~~~~~d~~Fl~~RLLFLlTa~~~~~~~~L~~e~~~~~~ 126 (446)
T PF10165_consen 47 DVSREALKCLCNALFLSPSARQIFVDLGLAEKLCERLKNYSDSSQPSDVEFLDSRLLFLLTALRPDDRKKLIEEHHGVEL 126 (446)
T ss_pred HHHHHHHHHHHHHHhCCHHHHHHHHHcCcHHHHHHHHHcccccCCChhHHHHHHHHHHHHhcCChhHHHHHHHHhhhHHH
Confidence 8999999999999999999999999999999999999765 78899999999999988777777777654 77777
Q ss_pred HHHHHcC-----------------CCHHHHHHHHHHHHHhhcCChHHHHHHHHcCChHHHHHhhccC---------ChHH
Q 005044 254 LILMLRS-----------------EDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLSSC---------CSES 307 (717)
Q Consensus 254 L~~ll~~-----------------~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~l~~L~~ll~~~---------~~~~ 307 (717)
+...+.. .+.....+++..+.|+....+.... -...+.++.++.++..- ....
T Consensus 127 l~~~L~~~l~~~~~~~~~~~~~~~~~~~~l~EiLKllFNit~~~~~~~~-~~~~~~~~~l~~il~~~l~~~~~~~~l~~~ 205 (446)
T PF10165_consen 127 LTEALERHLKVKSKSSQEPTAPSPMDEEALSEILKLLFNITLHYPKSVP-EEFSPSIPHLVSILRRLLPPPPSSPPLDPP 205 (446)
T ss_pred HHHHHHHHHhcccccccccCCCCcchHHHHHHHHHHHHHhhhccCcccc-hhhhHHHHHHHHHHHHHhccCCCCCcchhh
Confidence 7765531 1335566777777777654433211 01112222222222110 1123
Q ss_pred HHHHHHHHHHHhcCChhhHHHHHhcCChHHHHHHhcCCCHHHHHHHHHHHHHhhcCCCCchhhHhcCChHHHHHhhcC--
Q 005044 308 QREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQSPDVQLREMSAFALGRLAQDMHNQAGIAHNGGLVPLLKLLDS-- 385 (717)
Q Consensus 308 ~~~a~~~L~~l~~~~~~~~~~l~~~~~l~~L~~~l~~~~~~v~~~a~~~L~~l~~~~~~~~~l~~~~~l~~L~~ll~~-- 385 (717)
..++..+|.|+-- .....++.... . .............+..|+++|..
T Consensus 206 ~~~~in~L~nlpl---~~~~~l~~~~~--------~-------------------~~~~~~~~~~~~~v~~Ll~~Ld~~l 255 (446)
T PF10165_consen 206 HSHAINALLNLPL---ECLDSLLSPKF--------Q-------------------QSSLFPEGDNMDVVERLLDFLDKRL 255 (446)
T ss_pred HHHHHHHHhCCCh---HHHhhhhcccC--------C-------------------cccccCCCCChHHHHHHHHHHHHHH
Confidence 3333344444311 00000000000 0 00000000111122233333310
Q ss_pred ---C---ChhHHHHHHHHHHhccCCCcchHHHHHhcCccccccchhHHhhhHHHHHHHHHHHHHHhhhchHHHHHHHHhh
Q 005044 386 ---K---NGSLQHNAAFALYGLADNEDNVADFIRVGGVQKLQDGEFIVQATKDCVAKTLKRLEEKIHGRVLNHLLYLMRV 459 (717)
Q Consensus 386 ---~---~~~v~~~a~~~L~~l~~~~~~~~~l~~~~~i~~L~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~L~~ll~~ 459 (717)
. -.+...-.+.+|.+++...+..+..++..+++.+.+...... ....+-.+|+.++.+
T Consensus 256 ~~~~~~~l~~~l~PlL~lL~~~~~~~~~~Rk~lr~~lLP~~~Dr~~~~e----------------~~~tL~~rLlrLmt~ 319 (446)
T PF10165_consen 256 DKYEALKLDELLTPLLTLLTRLARAAREVRKYLRARLLPPDKDRKKPPE----------------KGDTLRSRLLRLMTS 319 (446)
T ss_pred HhcCcccchhhHhhHHHHHHHHHHhcHHHHHHHHHHhCCChhhcccCCC----------------CCcchHHHHHHHhCC
Confidence 0 123344555566666666566666666666666543211100 123477889999999
Q ss_pred cchhHHHHHHHHHHhccCCC
Q 005044 460 AEKGVQRRVALALAHLCSPD 479 (717)
Q Consensus 460 ~~~~v~~~a~~aL~~l~~~~ 479 (717)
+.+.++..+...|..+|..+
T Consensus 320 ~~~~~k~~vaellf~Lc~~d 339 (446)
T PF10165_consen 320 PDPQLKDAVAELLFVLCKED 339 (446)
T ss_pred CCchHHHHHHHHHHHHHhhh
Confidence 99999999999999997553
No 115
>KOG2838 consensus Uncharacterized conserved protein, contains BTB/POZ domain [General function prediction only]
Probab=97.94 E-value=2.6e-05 Score=71.22 Aligned_cols=97 Identities=22% Similarity=0.283 Sum_probs=68.1
Q ss_pred eEeehhHHHHhhccHHHHHhhcCCCCCCCC---------cceEcCC-CCHHH-HHHHHHHHhcCccccc-----------
Q 005044 559 RRFYAHRICLLASSDAFRAMFDGGYREKDA---------RDIEIPN-IRWEV-FELMMRFIYTGSVDVT----------- 616 (717)
Q Consensus 559 ~~~~~h~~il~~~s~~f~~~~~~~~~e~~~---------~~i~l~~-~~~~~-~~~~l~~~Yt~~~~~~----------- 616 (717)
..+.+|+.|.++||+||+.++.....++.+ ..|.+.+ +=|.. -..++++|||+.++.+
T Consensus 261 eeikahkai~aaRS~ffRnLL~RkiregeE~sdrtlr~PkRIifdE~I~PkafA~i~lhclYTD~lDlSl~hkce~SigS 340 (401)
T KOG2838|consen 261 EEIKAHKAIAAARSKFFRNLLLRKIREGEEGSDRTLRRPKRIIFDELIFPKAFAPIFLHCLYTDRLDLSLAHKCEDSIGS 340 (401)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHhhcccccccccccCCceeechhhhcchhhhhhhhhhheecccchhhcccCCccccc
Confidence 578999999999999999999765544322 2344443 33444 4567899999987632
Q ss_pred -----------------hhhHHHHHHHHHhhChHhHHHHHHHHHHhcCChhcHHHH
Q 005044 617 -----------------LDIAQDLLRAADQYLLEGLKRLCEYTIAQDISLENVSSM 655 (717)
Q Consensus 617 -----------------~~~~~~ll~~A~~~~~~~l~~~c~~~l~~~i~~~n~~~~ 655 (717)
...+++++.+|-+|.+.-|...|+..+......++...+
T Consensus 341 LSeakAitnaGkpn~~qaaeAleL~~IAlFfEfemLaQa~e~Vir~acaadlsn~c 396 (401)
T KOG2838|consen 341 LSEAKAITNAGKPNDLQAAEALELIEIALFFEFEMLAQACEDVIRKACAADLSNGC 396 (401)
T ss_pred HHHHHHHHcCCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhccccc
Confidence 123567888888888888888888877776666554443
No 116
>COG5240 SEC21 Vesicle coat complex COPI, gamma subunit [Intracellular trafficking and secretion]
Probab=97.94 E-value=0.019 Score=59.19 Aligned_cols=333 Identities=15% Similarity=0.098 Sum_probs=176.0
Q ss_pred chHHHhHHHHHHHHhcCChhhHHHHHhCCChHHHHHHHhccccCCCccchhHHHHHHHHHHHHHhhcCchhhhHHHhcCC
Q 005044 129 EHEVEKGSAFALGLLAVKPEHQQLIVDNGALSHLVNLLKRHMDSNCSRAVNSVIRRAADAITNLAHENSSIKTRVRMEGG 208 (717)
Q Consensus 129 ~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~i~~L~~lL~~~~~~~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~ 208 (717)
+|--+.+|+..|..+-..... +...+++++..+...... -.....++....+...++.....+
T Consensus 203 ~~isqYHalGlLyq~kr~dkm--------a~lklv~hf~~n~smknq----~a~V~lvr~~~~ll~~n~q~~~q~----- 265 (898)
T COG5240 203 NPISQYHALGLLYQSKRTDKM--------AQLKLVEHFRGNASMKNQ----LAGVLLVRATVELLKENSQALLQL----- 265 (898)
T ss_pred ChHHHHHHHHHHHHHhcccHH--------HHHHHHHHhhcccccccc----hhheehHHHHHHHHHhChHHHHHH-----
Confidence 446677788877776632221 134566666554321100 111123344445555555554433
Q ss_pred cHHHHHhhcCCCHHHHHHHHHHHHHhhccChhhHHHHHhcCCHHHHHHHHcCCCHHHHHHHHHHHHHhhcCChHHHHHHH
Q 005044 209 IPPLVELLEFTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSEDSAIHYEAVGVIGNLVHSSPNIKKEVL 288 (717)
Q Consensus 209 i~~L~~ll~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~ 288 (717)
.|.|-..+++....+...++++++.++..+ ....+.+. .+..|-.+|+++....|-.|.++|..++...+.. +.
T Consensus 266 rpfL~~wls~k~emV~lE~Ar~v~~~~~~n--v~~~~~~~-~vs~L~~fL~s~rv~~rFsA~Riln~lam~~P~k---v~ 339 (898)
T COG5240 266 RPFLNSWLSDKFEMVFLEAARAVCALSEEN--VGSQFVDQ-TVSSLRTFLKSTRVVLRFSAMRILNQLAMKYPQK---VS 339 (898)
T ss_pred HHHHHHHhcCcchhhhHHHHHHHHHHHHhc--cCHHHHHH-HHHHHHHHHhcchHHHHHHHHHHHHHHHhhCCce---ee
Confidence 466777787777889999999998887532 22333332 5777888899999999999999999997655431 00
Q ss_pred HcCChHHHHHhhccCChHHHHHHHHHHHHHhcCChhhHHHHHhcCChHHHHHHhcCCCHHHHHHHHHHHHHhhcCCCCch
Q 005044 289 AAGALQPVIGLLSSCCSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQSPDVQLREMSAFALGRLAQDMHNQA 368 (717)
Q Consensus 289 ~~g~l~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~l~~~~~l~~L~~~l~~~~~~v~~~a~~~L~~l~~~~~~~~ 368 (717)
-.=+-+-.++.+.+..+...|...|..- +.++....++ ..+..++.+-....+.-+..++..|+..-+.+.
T Consensus 340 --vcN~evEsLIsd~Nr~IstyAITtLLKT--Gt~e~idrLv-----~~I~sfvhD~SD~FKiI~ida~rsLsl~Fp~k~ 410 (898)
T COG5240 340 --VCNKEVESLISDENRTISTYAITTLLKT--GTEETIDRLV-----NLIPSFVHDMSDGFKIIAIDALRSLSLLFPSKK 410 (898)
T ss_pred --ecChhHHHHhhcccccchHHHHHHHHHc--CchhhHHHHH-----HHHHHHHHhhccCceEEeHHHHHHHHhhCcHHH
Confidence 0112233444444444444444444332 3334333332 333334433223333344445555554322211
Q ss_pred ---------hhHhcCChH-------HHHHhhcCCChhHHHHHHHHHHhccCCCcchHHHHHhcCccccccchhHHhhhHH
Q 005044 369 ---------GIAHNGGLV-------PLLKLLDSKNGSLQHNAAFALYGLADNEDNVADFIRVGGVQKLQDGEFIVQATKD 432 (717)
Q Consensus 369 ---------~l~~~~~l~-------~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~l~~~~~i~~L~~~~~~~~~~~~ 432 (717)
.+.+.|+++ .+.+++. ..++-++.|+..|+......+..+..+
T Consensus 411 ~s~l~FL~~~L~~eGg~eFK~~~Vdaisd~~~-~~p~skEraLe~LC~fIEDcey~~I~v-------------------- 469 (898)
T COG5240 411 LSYLDFLGSSLLQEGGLEFKKYMVDAISDAME-NDPDSKERALEVLCTFIEDCEYHQITV-------------------- 469 (898)
T ss_pred HHHHHHHHHHHHhcccchHHHHHHHHHHHHHh-hCchHHHHHHHHHHHHHhhcchhHHHH--------------------
Confidence 122223221 1222221 233344444444444433322222111
Q ss_pred HHHHHHHHHHHH-----hhhchHHHHHHHHhhcchhHHHHHHHHHHhccCCCCCceeeecCCCHHHHHHHhcCCCchhhh
Q 005044 433 CVAKTLKRLEEK-----IHGRVLNHLLYLMRVAEKGVQRRVALALAHLCSPDDQRTIFIDGGGLELLLGLLGSTNPKQQL 507 (717)
Q Consensus 433 ~~~~~~~~l~~~-----~~~~~~~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~~~~~~l~~L~~ll~~~~~~v~~ 507 (717)
.++..+... .-+..+..+.+-+--++.-+|..|+.+|..++.+.... +........|.+.+.+.+.++|.
T Consensus 470 ---rIL~iLG~EgP~a~~P~~yvrhIyNR~iLEN~ivRsaAv~aLskf~ln~~d~--~~~~sv~~~lkRclnD~DdeVRd 544 (898)
T COG5240 470 ---RILGILGREGPRAKTPGKYVRHIYNRLILENNIVRSAAVQALSKFALNISDV--VSPQSVENALKRCLNDQDDEVRD 544 (898)
T ss_pred ---HHHHHhcccCCCCCCcchHHHHHHHHHHHhhhHHHHHHHHHHHHhccCcccc--ccHHHHHHHHHHHhhcccHHHHH
Confidence 122222111 01123444444444567789999999999887664422 22345677888999999999999
Q ss_pred hhHHHHHHhhhc
Q 005044 508 DGAVALFKLANK 519 (717)
Q Consensus 508 ~a~~~l~~L~~~ 519 (717)
.|+.++.++-..
T Consensus 545 rAsf~l~~~~~~ 556 (898)
T COG5240 545 RASFLLRNMRLS 556 (898)
T ss_pred HHHHHHHhhhhh
Confidence 999999988643
No 117
>PF00514 Arm: Armadillo/beta-catenin-like repeat; InterPro: IPR000225 The armadillo (Arm) repeat is an approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila melanogaster segment polarity gene armadillo involved in signal transduction through wingless. Animal Arm-repeat proteins function in various processes, including intracellular signalling and cytoskeletal regulation, and include such proteins as beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumour suppressor protein, and the nuclear transport factor importin-alpha, amongst others []. A subset of these proteins is conserved across eukaryotic kingdoms. In higher plants, some Arm-repeat proteins function in intracellular signalling like their mammalian counterparts, while others have novel functions []. The 3-dimensional fold of an armadillo repeat is known from the crystal structure of beta-catenin, where the 12 repeats form a superhelix of alpha helices with three helices per unit []. The cylindrical structure features a positively charged grove, which presumably interacts with the acidic surfaces of the known interaction partners of beta-catenin.; GO: 0005515 protein binding; PDB: 2Z6G_A 1IQ1_C 3RZX_A 2C1M_A 3BTR_C 3OQS_A 3TPO_A 1IAL_A 1Q1S_C 1PJM_B ....
Probab=97.89 E-value=2.7e-05 Score=51.25 Aligned_cols=40 Identities=40% Similarity=0.643 Sum_probs=37.5
Q ss_pred ChhhHHHHHhcCCHHHHHHHHcCCCHHHHHHHHHHHHHhh
Q 005044 238 NDENKNQIVECNALPTLILMLRSEDSAIHYEAVGVIGNLV 277 (717)
Q Consensus 238 ~~~~~~~~~~~g~i~~L~~ll~~~~~~v~~~a~~~L~~l~ 277 (717)
+++++..+++.|+++.|+++|++++++++..|+|+|+||+
T Consensus 1 ~~~~~~~i~~~g~i~~Lv~ll~~~~~~v~~~a~~al~nl~ 40 (41)
T PF00514_consen 1 SPENKQAIVEAGGIPPLVQLLKSPDPEVQEEAAWALGNLA 40 (41)
T ss_dssp SHHHHHHHHHTTHHHHHHHHTTSSSHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHcccHHHHHHHHcCCCHHHHHHHHHHHHHHh
Confidence 3678889999999999999999999999999999999996
No 118
>KOG2259 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.87 E-value=0.0014 Score=68.19 Aligned_cols=96 Identities=15% Similarity=0.199 Sum_probs=63.0
Q ss_pred HHHHHHHHHHHHHhhcCchhhhHHHhcCCcHHHHHhhcCCCHHHHHHHHHHHHHhhccCh------hhHHHHHhcCCHHH
Q 005044 180 SVIRRAADAITNLAHENSSIKTRVRMEGGIPPLVELLEFTDTKVQRAAAGALRTLAFKND------ENKNQIVECNALPT 253 (717)
Q Consensus 180 ~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~L~~~~~------~~~~~~~~~g~i~~ 253 (717)
.++..|+..|..|.... ...+. .....++.+.+++..||..|...++....-.+ .....+.+ .++..
T Consensus 213 ~Vrt~A~eglL~L~eg~-kL~~~-----~Y~~A~~~lsD~~e~VR~aAvqlv~v~gn~~p~~~e~e~~e~kl~D-~aF~~ 285 (823)
T KOG2259|consen 213 RVRTHAVEGLLALSEGF-KLSKA-----CYSRAVKHLSDDYEDVRKAAVQLVSVWGNRCPAPLERESEEEKLKD-AAFSS 285 (823)
T ss_pred chHHHHHHHHHhhcccc-cccHH-----HHHHHHHHhcchHHHHHHHHHHHHHHHHhcCCCcccchhhhhhhHH-HHHHH
Confidence 66666776666665421 11111 34567888888999999999777766654221 11122222 36778
Q ss_pred HHHHHcCCCHHHHHHHHHHHHHhhcCChH
Q 005044 254 LILMLRSEDSAIHYEAVGVIGNLVHSSPN 282 (717)
Q Consensus 254 L~~ll~~~~~~v~~~a~~~L~~l~~~~~~ 282 (717)
++..+++.+-.||..|+.+|+.+-.-+++
T Consensus 286 vC~~v~D~sl~VRV~AaK~lG~~~~vSee 314 (823)
T KOG2259|consen 286 VCRAVRDRSLSVRVEAAKALGEFEQVSEE 314 (823)
T ss_pred HHHHHhcCceeeeehHHHHhchHHHhHHH
Confidence 88999999999999999999888544443
No 119
>COG5369 Uncharacterized conserved protein [Function unknown]
Probab=97.87 E-value=6.3e-05 Score=75.91 Aligned_cols=190 Identities=12% Similarity=0.080 Sum_probs=145.2
Q ss_pred HHHHHHHHHHhhcCChHHHHHHHHcCChHHHHHhhccCChHHHHHHHHHHHHHhcCChhhHHHHHhcCChHHHHHHhcCC
Q 005044 266 HYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLSSCCSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQSP 345 (717)
Q Consensus 266 ~~~a~~~L~~l~~~~~~~~~~~~~~g~l~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~l~~~~~l~~L~~~l~~~ 345 (717)
...++.+|..++.+....+..+.+..+...|+++|.+++..+.-.+...++|+.......+..+++.|++..|++++.+.
T Consensus 406 ~~a~~l~LkS~SrSV~~LRTgL~d~~I~elLi~~Ls~Peimi~~~~t~~icn~vv~fsnL~~~fL~~~iIdvl~~~v~sK 485 (743)
T COG5369 406 FVAIVLFLKSMSRSVTFLRTGLLDYPIVELLIDALSNPEIMIEFPDTIDICNKVVPFSNLGAGFLEKSIIDVLVNLVMSK 485 (743)
T ss_pred HHHHHHHHHHhhHHHHHHHhhccccchHHHHHHHhcCccceeeccchhhhhheeeeccchHHHHHHhhHHHHHHHHhhcc
Confidence 45566677777766666677777888999999999998877777888899998776677788899999999999999998
Q ss_pred CHHHHHHHHHHHHHhhcCCCC--chhhHhcCChHHHHHhhcCCChhHHHHHHHHHHhccCCCcchHHHHHhcCccccccc
Q 005044 346 DVQLREMSAFALGRLAQDMHN--QAGIAHNGGLVPLLKLLDSKNGSLQHNAAFALYGLADNEDNVADFIRVGGVQKLQDG 423 (717)
Q Consensus 346 ~~~v~~~a~~~L~~l~~~~~~--~~~l~~~~~l~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~l~~~~~i~~L~~~ 423 (717)
|..+|....|.+.++..+..+ +-.+....++..++.+..++...|+..++..++|+..+...-+... .-+.+.
T Consensus 486 DdaLqans~wvlrHlmyncq~~ekf~~Lakig~~kvl~~~NDpc~~vq~q~lQilrNftc~~~knEksk-----dv~~K~ 560 (743)
T COG5369 486 DDALQANSEWVLRHLMYNCQKNEKFKFLAKIGVEKVLSYTNDPCFKVQHQVLQILRNFTCDTSKNEKSK-----DVFIKA 560 (743)
T ss_pred hhhhhhcchhhhhhhhhcCcchhhhhhHHhcCHHHHHHHhcCcccccHHHHHHHHHhcccccccccccc-----eeEEec
Confidence 999999999999999986654 3456777889999999999999999999999999965322101111 111110
Q ss_pred hhHHhhhHHHHHHHHHHHHHHhhhchHHHHHHHHhhcchhHHHHHHHHHHhccCCCC
Q 005044 424 EFIVQATKDCVAKTLKRLEEKIHGRVLNHLLYLMRVAEKGVQRRVALALAHLCSPDD 480 (717)
Q Consensus 424 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~ 480 (717)
. + ..=....|++.+...+|-.-...+..|.+++...+
T Consensus 561 ~----p----------------~~ylfk~l~~k~e~~np~~i~~~~yilv~~aa~d~ 597 (743)
T COG5369 561 T----P----------------RRYLFKRLIDKYEENNPMEILEGCYILVRNAACDD 597 (743)
T ss_pred C----h----------------HHHHHHHHHHHHHhcCchhhhhhHHHHHHHHhccc
Confidence 0 0 00145678888888888777777888888866655
No 120
>PF00514 Arm: Armadillo/beta-catenin-like repeat; InterPro: IPR000225 The armadillo (Arm) repeat is an approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila melanogaster segment polarity gene armadillo involved in signal transduction through wingless. Animal Arm-repeat proteins function in various processes, including intracellular signalling and cytoskeletal regulation, and include such proteins as beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumour suppressor protein, and the nuclear transport factor importin-alpha, amongst others []. A subset of these proteins is conserved across eukaryotic kingdoms. In higher plants, some Arm-repeat proteins function in intracellular signalling like their mammalian counterparts, while others have novel functions []. The 3-dimensional fold of an armadillo repeat is known from the crystal structure of beta-catenin, where the 12 repeats form a superhelix of alpha helices with three helices per unit []. The cylindrical structure features a positively charged grove, which presumably interacts with the acidic surfaces of the known interaction partners of beta-catenin.; GO: 0005515 protein binding; PDB: 2Z6G_A 1IQ1_C 3RZX_A 2C1M_A 3BTR_C 3OQS_A 3TPO_A 1IAL_A 1Q1S_C 1PJM_B ....
Probab=97.87 E-value=3.1e-05 Score=50.93 Aligned_cols=40 Identities=43% Similarity=0.755 Sum_probs=37.3
Q ss_pred hhhHHHHHhcCChHHHHHHhcCCCHHHHHHHHHHHHHhhc
Q 005044 323 SDCKVHIVQRGAVRPLIEMLQSPDVQLREMSAFALGRLAQ 362 (717)
Q Consensus 323 ~~~~~~l~~~~~l~~L~~~l~~~~~~v~~~a~~~L~~l~~ 362 (717)
++++..+++.|++|.|+++|+++++.+++.|+|+|+||+.
T Consensus 2 ~~~~~~i~~~g~i~~Lv~ll~~~~~~v~~~a~~al~nl~~ 41 (41)
T PF00514_consen 2 PENKQAIVEAGGIPPLVQLLKSPDPEVQEEAAWALGNLAA 41 (41)
T ss_dssp HHHHHHHHHTTHHHHHHHHTTSSSHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHcccHHHHHHHHcCCCHHHHHHHHHHHHHHhC
Confidence 5678889999999999999999999999999999999974
No 121
>PF10165 Ric8: Guanine nucleotide exchange factor synembryn; InterPro: IPR019318 Ric8 is involved in the EGL-30 neurotransmitter signalling pathway []. It is a guanine nucleotide exchange factor [] that regulates neurotransmitter secretion.
Probab=97.83 E-value=0.0012 Score=69.61 Aligned_cols=273 Identities=18% Similarity=0.180 Sum_probs=173.5
Q ss_pred HHHHHHhhcChhhHHHHHhCCChHHHHHhhcCCCCCccccCCCccchHHHhHHHHHHHHhc-CChhhHHHHHhCCChHHH
Q 005044 84 THVLAELAKNEEVVNWIVEGGAVPALVKHLQAPPTSEADRNLKPFEHEVEKGSAFALGLLA-VKPEHQQLIVDNGALSHL 162 (717)
Q Consensus 84 ~~~L~~l~~~~~~~~~~~~~g~i~~L~~lL~~~~~~~~~~~~~~~~~~v~~~a~~~L~~l~-~~~~~~~~~~~~~~i~~L 162 (717)
+.+|.-+++++.....+....++..|+++-.-... ........++.+...|++||.|+. .++..|..+.+.|+...+
T Consensus 2 L~~LRiLsRd~~~~~~l~~~~~l~~L~~~a~l~~~--~~~~~~~~~~~v~~EALKCL~N~lf~s~~aR~~~~~~~~~~~l 79 (446)
T PF10165_consen 2 LETLRILSRDPTGLDPLFTEEGLSTLLKHAGLSES--DEDEFESPDPDVSREALKCLCNALFLSPSARQIFVDLGLAEKL 79 (446)
T ss_pred HHHHHHHccCcccchhhccHHHHHHHHHhcCCccc--ccccccCCChHHHHHHHHHHHHHHhCCHHHHHHHHHcCcHHHH
Confidence 55666677777777777777777777776522110 001122335699999999999999 999999999999999999
Q ss_pred HHHHhccccCCCccchhHHHHHHHHHHHHHhhcCchhhhHHHhc-CCcHHHHHhhcC-----------------CCHHHH
Q 005044 163 VNLLKRHMDSNCSRAVNSVIRRAADAITNLAHENSSIKTRVRME-GGIPPLVELLEF-----------------TDTKVQ 224 (717)
Q Consensus 163 ~~lL~~~~~~~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~-~~i~~L~~ll~~-----------------~~~~v~ 224 (717)
+..|+.......+ .++.....++|.-++......+..+++. +++..+...+.. .+....
T Consensus 80 ~~~Lk~~~~~~~~---~d~~Fl~~RLLFLlTa~~~~~~~~L~~e~~~~~~l~~~L~~~l~~~~~~~~~~~~~~~~~~~~l 156 (446)
T PF10165_consen 80 CERLKNYSDSSQP---SDVEFLDSRLLFLLTALRPDDRKKLIEEHHGVELLTEALERHLKVKSKSSQEPTAPSPMDEEAL 156 (446)
T ss_pred HHHHHcccccCCC---hhHHHHHHHHHHHHhcCChhHHHHHHHHhhhHHHHHHHHHHHHhcccccccccCCCCcchHHHH
Confidence 9999987432111 1778888888888887677777666654 677777665521 134567
Q ss_pred HHHHHHHHHhhccChhhHH-HHHh--cCCHHHHHHHH---cC--CCHHHHHHHHHHHHHhhcCChHHHHHH---------
Q 005044 225 RAAAGALRTLAFKNDENKN-QIVE--CNALPTLILML---RS--EDSAIHYEAVGVIGNLVHSSPNIKKEV--------- 287 (717)
Q Consensus 225 ~~a~~~L~~L~~~~~~~~~-~~~~--~g~i~~L~~ll---~~--~~~~v~~~a~~~L~~l~~~~~~~~~~~--------- 287 (717)
..+++.+.|+..+.+.... .... ..++..+..++ .. +.......++.+|.++-.. +...+
T Consensus 157 ~EiLKllFNit~~~~~~~~~~~~~~~~~l~~il~~~l~~~~~~~~l~~~~~~~in~L~nlpl~---~~~~l~~~~~~~~~ 233 (446)
T PF10165_consen 157 SEILKLLFNITLHYPKSVPEEFSPSIPHLVSILRRLLPPPPSSPPLDPPHSHAINALLNLPLE---CLDSLLSPKFQQSS 233 (446)
T ss_pred HHHHHHHHHhhhccCcccchhhhHHHHHHHHHHHHHhccCCCCCcchhhHHHHHHHHhCCChH---HHhhhhcccCCccc
Confidence 7889999999875444332 1111 11333444442 11 2346677888888887211 11111
Q ss_pred -----HHcCChHHHHHhhcc----CC----hHHHHHHHHHHHHHhcCChhhHHHHHh----------------cCChHHH
Q 005044 288 -----LAAGALQPVIGLLSS----CC----SESQREAALLLGQFAATDSDCKVHIVQ----------------RGAVRPL 338 (717)
Q Consensus 288 -----~~~g~l~~L~~ll~~----~~----~~~~~~a~~~L~~l~~~~~~~~~~l~~----------------~~~l~~L 338 (717)
.....+..|+.+|.. .. .+.....+.+|.+++......+..+.. ..+-..|
T Consensus 234 ~~~~~~~~~~v~~Ll~~Ld~~l~~~~~~~l~~~l~PlL~lL~~~~~~~~~~Rk~lr~~lLP~~~Dr~~~~e~~~tL~~rL 313 (446)
T PF10165_consen 234 LFPEGDNMDVVERLLDFLDKRLDKYEALKLDELLTPLLTLLTRLARAAREVRKYLRARLLPPDKDRKKPPEKGDTLRSRL 313 (446)
T ss_pred ccCCCCChHHHHHHHHHHHHHHHhcCcccchhhHhhHHHHHHHHHHhcHHHHHHHHHHhCCChhhcccCCCCCcchHHHH
Confidence 111245566666542 11 234455666777777655444443322 2455678
Q ss_pred HHHhcCCCHHHHHHHHHHHHHhhcCC
Q 005044 339 IEMLQSPDVQLREMSAFALGRLAQDM 364 (717)
Q Consensus 339 ~~~l~~~~~~v~~~a~~~L~~l~~~~ 364 (717)
+.++.+..+.++..+...|..||..+
T Consensus 314 lrLmt~~~~~~k~~vaellf~Lc~~d 339 (446)
T PF10165_consen 314 LRLMTSPDPQLKDAVAELLFVLCKED 339 (446)
T ss_pred HHHhCCCCchHHHHHHHHHHHHHhhh
Confidence 99998888999999999999998643
No 122
>KOG0915 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.82 E-value=0.0021 Score=73.40 Aligned_cols=322 Identities=15% Similarity=0.102 Sum_probs=177.9
Q ss_pred hHHHHHHHHHHHHHhhcCchhhhHHHhcCCcHHHHHhhcCCCHHHHHHHHHHHHHhhccChhhHHHHHhcCCHHHHHHHH
Q 005044 179 NSVIRRAADAITNLAHENSSIKTRVRMEGGIPPLVELLEFTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILML 258 (717)
Q Consensus 179 ~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~g~i~~L~~ll 258 (717)
|.-+..|+..+..++...-. +..-.-...||.|.+.=-+++..|+.....+...|..+......... ..+++-|+.-+
T Consensus 971 wnSk~GaAfGf~~i~~~a~~-kl~p~l~kLIPrLyRY~yDP~~~Vq~aM~sIW~~Li~D~k~~vd~y~-neIl~eLL~~l 1048 (1702)
T KOG0915|consen 971 WNSKKGAAFGFGAIAKQAGE-KLEPYLKKLIPRLYRYQYDPDKKVQDAMTSIWNALITDSKKVVDEYL-NEILDELLVNL 1048 (1702)
T ss_pred hhcccchhhchHHHHHHHHH-hhhhHHHHhhHHHhhhccCCcHHHHHHHHHHHHHhccChHHHHHHHH-HHHHHHHHHhc
Confidence 34445555555555542211 11111123567777766788999988777776667653333333333 34677788888
Q ss_pred cCCCHHHHHHHHHHHHHhhcCChHHHHHHHH--cCChHHHHHhhccCChHHHHH---HHHHHHHHhcC--Ch---hhHHH
Q 005044 259 RSEDSAIHYEAVGVIGNLVHSSPNIKKEVLA--AGALQPVIGLLSSCCSESQRE---AALLLGQFAAT--DS---DCKVH 328 (717)
Q Consensus 259 ~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~--~g~l~~L~~ll~~~~~~~~~~---a~~~L~~l~~~--~~---~~~~~ 328 (717)
.+..-.||+.+|-+|..|..+.+.. .+.+ ..+...+...+.+-...+|+. ++.+|+.++.. +. .....
T Consensus 1049 t~kewRVReasclAL~dLl~g~~~~--~~~e~lpelw~~~fRvmDDIKEsVR~aa~~~~~~lsKl~vr~~d~~~~~~~~~ 1126 (1702)
T KOG0915|consen 1049 TSKEWRVREASCLALADLLQGRPFD--QVKEKLPELWEAAFRVMDDIKESVREAADKAARALSKLCVRICDVTNGAKGKE 1126 (1702)
T ss_pred cchhHHHHHHHHHHHHHHHcCCChH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCCcccHHH
Confidence 8888999999999999998875532 2221 122333333344444556654 44556665521 11 11111
Q ss_pred HHhcCChHHHHHH-hcCCCHHHHHHHHHHHHHhhcCCCCchhhHhcCChHHHHHhhcCCChhHHHH-HHHHHHhccCCCc
Q 005044 329 IVQRGAVRPLIEM-LQSPDVQLREMSAFALGRLAQDMHNQAGIAHNGGLVPLLKLLDSKNGSLQHN-AAFALYGLADNED 406 (717)
Q Consensus 329 l~~~~~l~~L~~~-l~~~~~~v~~~a~~~L~~l~~~~~~~~~l~~~~~l~~L~~ll~~~~~~v~~~-a~~~L~~l~~~~~ 406 (717)
+. ..++|.|+.- +-+.-+++|..++.++..|+......-.-.-...++.|++....-++.|.-. ++.+ .|.. .+
T Consensus 1127 ~l-~~iLPfLl~~gims~v~evr~~si~tl~dl~Kssg~~lkP~~~~LIp~ll~~~s~lE~~vLnYls~r~-~~~e--~e 1202 (1702)
T KOG0915|consen 1127 AL-DIILPFLLDEGIMSKVNEVRRFSIGTLMDLAKSSGKELKPHFPKLIPLLLNAYSELEPQVLNYLSLRL-INIE--TE 1202 (1702)
T ss_pred HH-HHHHHHHhccCcccchHHHHHHHHHHHHHHHHhchhhhcchhhHHHHHHHHHccccchHHHHHHHHhh-hhhH--HH
Confidence 11 2244444432 1245678999999999999976544222222234555666666555544322 2222 1110 00
Q ss_pred chHHHHHhcCccccccchhHHhhhHHHHHHHHHHHHHHhhhchHHHHHHHHhhc-chhHHHHHHHHHHhccCC--CCCce
Q 005044 407 NVADFIRVGGVQKLQDGEFIVQATKDCVAKTLKRLEEKIHGRVLNHLLYLMRVA-EKGVQRRVALALAHLCSP--DDQRT 483 (717)
Q Consensus 407 ~~~~l~~~~~i~~L~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~L~~ll~~~-~~~v~~~a~~aL~~l~~~--~~~~~ 483 (717)
.....+..+ ....+.-+.+-..++.+...+-.+++|++.++++.+ .-..+..++..+..|+.. .+..
T Consensus 1203 alDt~R~s~---------aksspmmeTi~~ci~~iD~~vLeelip~l~el~R~sVgl~Tkvg~A~fI~~L~~r~~~emt- 1272 (1702)
T KOG0915|consen 1203 ALDTLRASA---------AKSSPMMETINKCINYIDISVLEELIPRLTELVRGSVGLGTKVGCASFISLLVQRLGSEMT- 1272 (1702)
T ss_pred HHHHHHHhh---------hcCCcHHHHHHHHHHhhhHHHHHHHHHHHHHHHhccCCCCcchhHHHHHHHHHHHhccccC-
Confidence 000001000 001111122222334444445667899999999887 556777777777777532 2211
Q ss_pred eeecCCCHHHHHHHhcCCCchhhhhhHHHHHHhhhc
Q 005044 484 IFIDGGGLELLLGLLGSTNPKQQLDGAVALFKLANK 519 (717)
Q Consensus 484 ~~~~~~~l~~L~~ll~~~~~~v~~~a~~~l~~L~~~ 519 (717)
......+..+...+++.++.+++.-+.++..|+.-
T Consensus 1273 -P~sgKll~al~~g~~dRNesv~kafAsAmG~L~k~ 1307 (1702)
T KOG0915|consen 1273 -PYSGKLLRALFPGAKDRNESVRKAFASAMGYLAKF 1307 (1702)
T ss_pred -cchhHHHHHHhhccccccHHHHHHHHHHHHHHHhc
Confidence 11234578888889999999999999999988875
No 123
>COG5231 VMA13 Vacuolar H+-ATPase V1 sector, subunit H [Energy production and conversion]
Probab=97.81 E-value=0.0013 Score=62.27 Aligned_cols=227 Identities=17% Similarity=0.136 Sum_probs=154.5
Q ss_pred HHHHHHHHHHHHHHhhcChhhHHHHHhCC-ChHHHHHhhcCCCCCccccCCCccchHHHhHHHHHHHHhcCChhhHHHHH
Q 005044 76 DRAAAKRATHVLAELAKNEEVVNWIVEGG-AVPALVKHLQAPPTSEADRNLKPFEHEVEKGSAFALGLLAVKPEHQQLIV 154 (717)
Q Consensus 76 ~~~~~~~a~~~L~~l~~~~~~~~~~~~~g-~i~~L~~lL~~~~~~~~~~~~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~ 154 (717)
++-.++-|++.+.++.-.+++|.....+. +-..++++++..-. +.++|...+-+++.++.++.+.+.+-
T Consensus 162 ~~lTrlfav~cl~~l~~~~e~R~i~waentcs~r~~e~l~n~vg----------~~qlQY~SL~~iw~lTf~~~~aqdi~ 231 (432)
T COG5231 162 DFLTRLFAVSCLSNLEFDVEKRKIEWAENTCSRRFMEILQNYVG----------VKQLQYNSLIIIWILTFSKECAQDID 231 (432)
T ss_pred HHHHHHHHHHHHhhhhhhHHHHHHHHHHhhHHHHHHHHHHhhhh----------hhhhHHHHHHHHHHHhcCHHHHHHHH
Confidence 33358889999999988888888766543 45677788776433 22889999999999998888764333
Q ss_pred hC-CChHHHHHHHhccccCCCccchhHHHHHHHHHHHHHhhcCc-hhhhHHHhcCCcHHHHHhhcC---CCHHHHHHHHH
Q 005044 155 DN-GALSHLVNLLKRHMDSNCSRAVNSVIRRAADAITNLAHENS-SIKTRVRMEGGIPPLVELLEF---TDTKVQRAAAG 229 (717)
Q Consensus 155 ~~-~~i~~L~~lL~~~~~~~~~~~~~~~~~~a~~~L~~l~~~~~-~~~~~~~~~~~i~~L~~ll~~---~~~~v~~~a~~ 229 (717)
+. ..+..++.+.+....+ .+.+.++.++.|++...+ ..-......|-+..-++.|.. .+.+++...-.
T Consensus 232 K~~dli~dli~iVk~~~ke-------KV~Rlc~~Iv~n~~dK~pK~~I~~~lll~~~~k~vq~L~erkysDEel~~di~~ 304 (432)
T COG5231 232 KMDDLINDLIAIVKERAKE-------KVLRLCCGIVANVLDKSPKGYIFSPLLLNDISKCVQVLLERKYSDEELVIDIER 304 (432)
T ss_pred HHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHhcccccchhhhhHhhcchHHHHHHHHhcCCChHHHHHHHHH
Confidence 22 3466677777766543 788999999999997442 221222223434455555532 34444432221
Q ss_pred HHHHhhc---------------------cCh---------hhHHHHHh--cCCHHHHHHHHcCCCHH-HHHHHHHHHHHh
Q 005044 230 ALRTLAF---------------------KND---------ENKNQIVE--CNALPTLILMLRSEDSA-IHYEAVGVIGNL 276 (717)
Q Consensus 230 ~L~~L~~---------------------~~~---------~~~~~~~~--~g~i~~L~~ll~~~~~~-v~~~a~~~L~~l 276 (717)
.=..|.. .+| ++...+.+ ..++..|.++++..++. ....||.-|..+
T Consensus 305 i~s~l~~~~k~l~~fD~Y~~ELdsg~l~wSp~H~~~dFWs~N~d~l~kdny~i~k~L~~~lq~n~~nt~i~vAc~Di~~~ 384 (432)
T COG5231 305 IRSRLVQNTKKLCIFDNYLNELDSGRLEWSPYHHKKDFWSTNLDMLIKDNYEIVKVLKKYLQSNNPNTWICVACSDIFQL 384 (432)
T ss_pred HHHHHHhhhhhhhHHHHHHHHHhhCcccCCCcccccCchhhhHHHHhhhhHHHHHHHHHHHhcCCCCceEeeeHhhHHHH
Confidence 1111110 011 33444443 24678889999887765 566788889999
Q ss_pred hcCChHHHHHHHHcCChHHHHHhhccCChHHHHHHHHHHHHHh
Q 005044 277 VHSSPNIKKEVLAAGALQPVIGLLSSCCSESQREAALLLGQFA 319 (717)
Q Consensus 277 ~~~~~~~~~~~~~~g~l~~L~~ll~~~~~~~~~~a~~~L~~l~ 319 (717)
....|+...-+...|+=..++.++.+++++++-+|..++..+.
T Consensus 385 Vr~~PE~~~vl~Kyg~k~~im~L~nh~d~~VkfeAl~a~q~~i 427 (432)
T COG5231 385 VRASPEINAVLSKYGVKEIIMNLINHDDDDVKFEALQALQTCI 427 (432)
T ss_pred HHhCchHHHHHHHhhhHHHHHHHhcCCCchhhHHHHHHHHHHH
Confidence 8888999888889999999999999999999999999887764
No 124
>KOG2716 consensus Polymerase delta-interacting protein PDIP1 and related proteins, contain BTB/POZ domain [Inorganic ion transport and metabolism]
Probab=97.80 E-value=0.00015 Score=66.79 Aligned_cols=94 Identities=29% Similarity=0.455 Sum_probs=80.0
Q ss_pred EEEEEcCeEeehhHHHHhhccHHHHHhhcCCCC--CCCCcceEcCCCCHHHHHHHHHHHhcCccccc--hhhHHHHHHHH
Q 005044 552 VTFLVEGRRFYAHRICLLASSDAFRAMFDGGYR--EKDARDIEIPNIRWEVFELMMRFIYTGSVDVT--LDIAQDLLRAA 627 (717)
Q Consensus 552 v~~~~~~~~~~~h~~il~~~s~~f~~~~~~~~~--e~~~~~i~l~~~~~~~~~~~l~~~Yt~~~~~~--~~~~~~ll~~A 627 (717)
+.+-+||..|..++.-|.....||+.|+.+++. -...+.|.+ |=+|.-|+.+|.||=.|++.++ ...+.+|+.=|
T Consensus 7 vkLnvGG~~F~Tsk~TLtk~dg~fk~m~e~~i~~~~d~s~~IFI-DRSpKHF~~ILNfmRdGdv~LPe~~kel~El~~EA 85 (230)
T KOG2716|consen 7 VKLNVGGTIFKTSKSTLTKFDGFFKTMLETDIPVEKDESGCIFI-DRSPKHFDTILNFMRDGDVDLPESEKELKELLREA 85 (230)
T ss_pred EEEecCCeEEEeehhhhhhhhhHHHHHhhcCCccccCCcCcEEe-cCChhHHHHHHHhhhcccccCccchHHHHHHHHHH
Confidence 557889999999999999999999999998874 223345666 5799999999999998888764 56688999999
Q ss_pred HhhChHhHHHHHHHHHHhc
Q 005044 628 DQYLLEGLKRLCEYTIAQD 646 (717)
Q Consensus 628 ~~~~~~~l~~~c~~~l~~~ 646 (717)
.+|.++.|.+.|...+...
T Consensus 86 ~fYlL~~Lv~~C~~~i~~~ 104 (230)
T KOG2716|consen 86 EFYLLDGLVELCQSAIARL 104 (230)
T ss_pred HHhhHHHHHHHHHHHhhhc
Confidence 9999999999999877654
No 125
>KOG1077 consensus Vesicle coat complex AP-2, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.72 E-value=0.052 Score=57.53 Aligned_cols=178 Identities=21% Similarity=0.236 Sum_probs=116.7
Q ss_pred HHHHHHHHhhccChhhHHHHHhcCCHHHHHHHHcCCCHHHHHHHHHHHHHhhcCChHHHHHHHHcCChHHHHHhhc-cCC
Q 005044 226 AAAGALRTLAFKNDENKNQIVECNALPTLILMLRSEDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLS-SCC 304 (717)
Q Consensus 226 ~a~~~L~~L~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~l~~L~~ll~-~~~ 304 (717)
.++.-..+|+.+-+.....+.+ .+..|.+++.+.+..+|..|+..++.|+..... ...+... .+.++..|+ ..+
T Consensus 308 aVLFeaI~l~~h~D~e~~ll~~--~~~~Lg~fls~rE~NiRYLaLEsm~~L~ss~~s-~davK~h--~d~Ii~sLkterD 382 (938)
T KOG1077|consen 308 AVLFEAISLAIHLDSEPELLSR--AVNQLGQFLSHRETNIRYLALESMCKLASSEFS-IDAVKKH--QDTIINSLKTERD 382 (938)
T ss_pred HHHHHHHHHHHHcCCcHHHHHH--HHHHHHHHhhcccccchhhhHHHHHHHHhccch-HHHHHHH--HHHHHHHhccccc
Confidence 3334444555444444444444 477888899999999999999999999866332 2333333 777888888 678
Q ss_pred hHHHHHHHHHHHHHhcCChhhHHHHHhcCChHHHHHHhcCCCHHHHHHHHHHHHHhhcCCCCchh---------------
Q 005044 305 SESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQSPDVQLREMSAFALGRLAQDMHNQAG--------------- 369 (717)
Q Consensus 305 ~~~~~~a~~~L~~l~~~~~~~~~~l~~~~~l~~L~~~l~~~~~~v~~~a~~~L~~l~~~~~~~~~--------------- 369 (717)
..+|+.++..|..+|. ..+...+ +..+++.|.+.++.+|+..+.-+.-|+..-..--.
T Consensus 383 vSirrravDLLY~mcD--~~Nak~I-----V~elLqYL~tAd~sireeivlKvAILaEKyAtDy~WyVdviLqLiriagd 455 (938)
T KOG1077|consen 383 VSIRRRAVDLLYAMCD--VSNAKQI-----VAELLQYLETADYSIREEIVLKVAILAEKYATDYSWYVDVILQLIRIAGD 455 (938)
T ss_pred hHHHHHHHHHHHHHhc--hhhHHHH-----HHHHHHHHhhcchHHHHHHHHHHHHHHHHhcCCcchhHHHHHHHHHHhcc
Confidence 8999999999999973 3444444 46688888889999999877666666642111111
Q ss_pred hHhcCChHHHHHhhcCCChhHHHHHHHHHHhccCCCcchHHHHHhcC
Q 005044 370 IAHNGGLVPLLKLLDSKNGSLQHNAAFALYGLADNEDNVADFIRVGG 416 (717)
Q Consensus 370 l~~~~~l~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~l~~~~~ 416 (717)
.+..++...+++.. -.+++++..|+..+......+...+.++..|+
T Consensus 456 ~vsdeVW~RvvQiV-vNnedlq~yaak~~fe~Lq~~a~hE~mVKvgg 501 (938)
T KOG1077|consen 456 YVSDEVWYRVVQIV-VNNEDLQGYAAKRLFEYLQKPACHENMVKVGG 501 (938)
T ss_pred cccHHHHHHhheeE-ecchhhhHHHHHHHHHHHhhhHHHHHHHHhhh
Confidence 11112222222222 24678888888888877777777777887765
No 126
>PF12348 CLASP_N: CLASP N terminal; InterPro: IPR024395 This domain is found in the N-terminal region of CLIP-associated proteins (CLASPs), which are widely conserved microtubule plus-end-tracking proteins that regulate the stability of dynamic microtubules [, ]. The domain is also found in other proteins involved in microtubule binding, including STU1, MOR1 and spindle pole body component Alp14.; PDB: 2QK2_A.
Probab=97.71 E-value=0.00011 Score=70.75 Aligned_cols=182 Identities=19% Similarity=0.179 Sum_probs=117.0
Q ss_pred ccCChHHHHHHHHHHHHHhcCC--hhhHHHHHh--cCChHHHHHHhcCCCHHHHHHHHHHHHHhhcCCCCchhhHhcCCh
Q 005044 301 SSCCSESQREAALLLGQFAATD--SDCKVHIVQ--RGAVRPLIEMLQSPDVQLREMSAFALGRLAQDMHNQAGIAHNGGL 376 (717)
Q Consensus 301 ~~~~~~~~~~a~~~L~~l~~~~--~~~~~~l~~--~~~l~~L~~~l~~~~~~v~~~a~~~L~~l~~~~~~~~~l~~~~~l 376 (717)
.+.+|+.+..++..|..+..++ ......+.. ..++..+...+.+....+...|+.++..++......-.-.-...+
T Consensus 17 ~~~~W~~r~~al~~L~~l~~~~~~~~~~~~~~~~l~~~~~~i~~~l~d~Rs~v~~~A~~~l~~l~~~l~~~~~~~~~~~l 96 (228)
T PF12348_consen 17 SESDWEERVEALQKLRSLIKGNAPEDFPPDFVECLRQLLDAIIKQLSDLRSKVSKTACQLLSDLARQLGSHFEPYADILL 96 (228)
T ss_dssp T-SSHHHHHHHHHHHHHHHHH-B-----HHHHHHHH---HHHHH-S-HH---HHHHHHHHHHHHHHHHGGGGHHHHHHHH
T ss_pred CccCHHHHHHHHHHHHHHHHcCCccccHHHHHHHHHHhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHH
Confidence 5678999999999999987655 222222222 256677778888778889999999999999754444333345568
Q ss_pred HHHHHhhcCCChhHHHHHHHHHHhccCCCcchHHHHHhcCccccccchhHHhhhHHHHHHHHHHHHHHhhhchHHHHHHH
Q 005044 377 VPLLKLLDSKNGSLQHNAAFALYGLADNEDNVADFIRVGGVQKLQDGEFIVQATKDCVAKTLKRLEEKIHGRVLNHLLYL 456 (717)
Q Consensus 377 ~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~l~~~~~i~~L~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~L~~l 456 (717)
+.|++.+.++...++..|..+|..+..+......+ .++.+...
T Consensus 97 ~~Ll~~~~~~~~~i~~~a~~~L~~i~~~~~~~~~~-------------------------------------~~~~l~~~ 139 (228)
T PF12348_consen 97 PPLLKKLGDSKKFIREAANNALDAIIESCSYSPKI-------------------------------------LLEILSQG 139 (228)
T ss_dssp HHHHHGGG---HHHHHHHHHHHHHHHTTS-H--HH-------------------------------------HHHHHHHH
T ss_pred HHHHHHHccccHHHHHHHHHHHHHHHHHCCcHHHH-------------------------------------HHHHHHHH
Confidence 88999999999999999999999998755411110 14456667
Q ss_pred HhhcchhHHHHHHHHHHhccCCCC-Cceeeec----CCCHHHHHHHhcCCCchhhhhhHHHHHHhhhc
Q 005044 457 MRVAEKGVQRRVALALAHLCSPDD-QRTIFID----GGGLELLLGLLGSTNPKQQLDGAVALFKLANK 519 (717)
Q Consensus 457 l~~~~~~v~~~a~~aL~~l~~~~~-~~~~~~~----~~~l~~L~~ll~~~~~~v~~~a~~~l~~L~~~ 519 (717)
+.+.++.+|..++..|..+...-. ....+-. ...++.+...+.+++++||..|-.++..+.+.
T Consensus 140 ~~~Kn~~vR~~~~~~l~~~l~~~~~~~~~l~~~~~~~~l~~~l~~~l~D~~~~VR~~Ar~~~~~l~~~ 207 (228)
T PF12348_consen 140 LKSKNPQVREECAEWLAIILEKWGSDSSVLQKSAFLKQLVKALVKLLSDADPEVREAARECLWALYSH 207 (228)
T ss_dssp TT-S-HHHHHHHHHHHHHHHTT-----GGG--HHHHHHHHHHHHHHHTSS-HHHHHHHHHHHHHHHHH
T ss_pred HhCCCHHHHHHHHHHHHHHHHHccchHhhhcccchHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHH
Confidence 788899999999999998865433 1111111 23678888999999999999999999988765
No 127
>KOG1061 consensus Vesicle coat complex AP-1/AP-2/AP-4, beta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.70 E-value=0.0017 Score=69.38 Aligned_cols=345 Identities=14% Similarity=0.099 Sum_probs=206.1
Q ss_pred HhHHHHHHHHhcCChhhHHHHHhCCChHHHHHHHhccccCCCccchhHHHHHHHHHHHHHhhcCchhhhHHHhcCCcHHH
Q 005044 133 EKGSAFALGLLAVKPEHQQLIVDNGALSHLVNLLKRHMDSNCSRAVNSVIRRAADAITNLAHENSSIKTRVRMEGGIPPL 212 (717)
Q Consensus 133 ~~~a~~~L~~l~~~~~~~~~~~~~~~i~~L~~lL~~~~~~~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L 212 (717)
+...-++++.+.-+.+. .+..+.+++.+...+- ++.+.+---+.+.+...+... .+.+..+
T Consensus 31 ~~a~kkvIa~Mt~G~Dv------SslF~dvvk~~~T~dl--------elKKlvyLYl~nYa~~~P~~a-----~~avnt~ 91 (734)
T KOG1061|consen 31 KDAVKKVIAYMTVGKDV------SSLFPDVVKCMQTRDL--------ELKKLVYLYLMNYAKGKPDLA-----ILAVNTF 91 (734)
T ss_pred HHHHHHHHhcCccCcch------HhhhHHHHhhcccCCc--------hHHHHHHHHHHHhhccCchHH-----Hhhhhhh
Confidence 33444566666644443 2446667777766654 777777777777777555432 2456778
Q ss_pred HHhhcCCCHHHHHHHHHHHHHhhccChhhHHHHHhcCCHHHHHHHHcCCCHHHHHHHHHHHHHhhcCChHHHHHHHHcCC
Q 005044 213 VELLEFTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSEDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGA 292 (717)
Q Consensus 213 ~~ll~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~ 292 (717)
+.=..++++.+|..|++.+..+-. +.... -+...+.+.++++++.+|..++-++.++-..+. +.....|+
T Consensus 92 ~kD~~d~np~iR~lAlrtm~~l~v--~~i~e-----y~~~Pl~~~l~d~~~yvRktaa~~vakl~~~~~---~~~~~~gl 161 (734)
T KOG1061|consen 92 LKDCEDPNPLIRALALRTMGCLRV--DKITE-----YLCDPLLKCLKDDDPYVRKTAAVCVAKLFDIDP---DLVEDSGL 161 (734)
T ss_pred hccCCCCCHHHHHHHhhceeeEee--hHHHH-----HHHHHHHHhccCCChhHHHHHHHHHHHhhcCCh---hhccccch
Confidence 888888999999999888777653 22221 246778999999999999999999999854433 56677899
Q ss_pred hHHHHHhhccCChHHHHHHHHHHHHHhcCChhhHHHHHhcCChHHHHHHhcCCCHHHHHHHHHHHHHhhcCCCCchhhHh
Q 005044 293 LQPVIGLLSSCCSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQSPDVQLREMSAFALGRLAQDMHNQAGIAH 372 (717)
Q Consensus 293 l~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~l~~~~~l~~L~~~l~~~~~~v~~~a~~~L~~l~~~~~~~~~l~~ 372 (717)
++.|..++.+.++.+...|..+|..+....+...........+..++..+..-+.--+. ..|..++.+.+... .-.
T Consensus 162 ~~~L~~ll~D~~p~VVAnAlaaL~eI~e~~~~~~~~~l~~~~~~~lL~al~ec~EW~qi---~IL~~l~~y~p~d~-~ea 237 (734)
T KOG1061|consen 162 VDALKDLLSDSNPMVVANALAALSEIHESHPSVNLLELNPQLINKLLEALNECTEWGQI---FILDCLAEYVPKDS-REA 237 (734)
T ss_pred hHHHHHHhcCCCchHHHHHHHHHHHHHHhCCCCCcccccHHHHHHHHHHHHHhhhhhHH---HHHHHHHhcCCCCc-hhH
Confidence 99999999999999999999999999765543222222223334444444433333333 34444554332221 111
Q ss_pred cCChHHHHHhhcCCChhHHHHHHHHHHhccCCCcchHHHHHhcCccccccchhHHhhhHHHHHHHHHHHHHHhhhc--hH
Q 005044 373 NGGLVPLLKLLDSKNGSLQHNAAFALYGLADNEDNVADFIRVGGVQKLQDGEFIVQATKDCVAKTLKRLEEKIHGR--VL 450 (717)
Q Consensus 373 ~~~l~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~l~~~~~i~~L~~~~~~~~~~~~~~~~~~~~l~~~~~~~--~~ 450 (717)
...+..+...+.+.++.+...+...+.++...........-...-++|..+........... +.++....+.. ++
T Consensus 238 ~~i~~r~~p~Lqh~n~avvlsavKv~l~~~~~~~~~~~~~~~K~~~pl~tlls~~~e~qyva---LrNi~lil~~~p~~~ 314 (734)
T KOG1061|consen 238 EDICERLTPRLQHANSAVVLSAVKVILQLVKYLKQVNELLFKKVAPPLVTLLSSESEIQYVA---LRNINLILQKRPEIL 314 (734)
T ss_pred HHHHHHhhhhhccCCcceEeehHHHHHHHHHHHHHHHHHHHHHhcccceeeecccchhhHHH---HhhHHHHHHhChHHH
Confidence 23455566677777888878888887777654333333333344455554433333222211 11211111110 11
Q ss_pred HHHHH--HHhhcch-hHHHHHHHHHHhccCCCCCceeeecCCCHHHHHHHhcCCCchhhhhhHHHHHHhhhc
Q 005044 451 NHLLY--LMRVAEK-GVQRRVALALAHLCSPDDQRTIFIDGGGLELLLGLLGSTNPKQQLDGAVALFKLANK 519 (717)
Q Consensus 451 ~~L~~--ll~~~~~-~v~~~a~~aL~~l~~~~~~~~~~~~~~~l~~L~~ll~~~~~~v~~~a~~~l~~L~~~ 519 (717)
..-+. +.+-.+| .++..=+.++..++......+ .+.-|......-+.+....+.+++.+++..
T Consensus 315 ~~~~~~Ff~kynDPiYvK~eKleil~~la~~~nl~q------vl~El~eYatevD~~fvrkaIraig~~aik 380 (734)
T KOG1061|consen 315 KVEIKVFFCKYNDPIYVKLEKLEILIELANDANLAQ------VLAELKEYATEVDVDFVRKAVRAIGRLAIK 380 (734)
T ss_pred HhHhHeeeeecCCchhhHHHHHHHHHHHhhHhHHHH------HHHHHHHhhhhhCHHHHHHHHHHhhhhhhh
Confidence 11111 1111233 566666777777766544222 345555556667778888999999999875
No 128
>COG5240 SEC21 Vesicle coat complex COPI, gamma subunit [Intracellular trafficking and secretion]
Probab=97.68 E-value=0.053 Score=56.06 Aligned_cols=306 Identities=18% Similarity=0.136 Sum_probs=180.8
Q ss_pred HHHHHHHHhhc-ChhhHHHHHhCCChHHHHHhhcCCCCCccccCCCccchHHHhHHHHHHHHhc-CC--hhhHHHHHhCC
Q 005044 82 RATHVLAELAK-NEEVVNWIVEGGAVPALVKHLQAPPTSEADRNLKPFEHEVEKGSAFALGLLA-VK--PEHQQLIVDNG 157 (717)
Q Consensus 82 ~a~~~L~~l~~-~~~~~~~~~~~g~i~~L~~lL~~~~~~~~~~~~~~~~~~v~~~a~~~L~~l~-~~--~~~~~~~~~~~ 157 (717)
..+++...+.. ++..+..+ .|.|-..|++... .|...+++++..++ .+ ++. . ..
T Consensus 246 ~lvr~~~~ll~~n~q~~~q~-----rpfL~~wls~k~e------------mV~lE~Ar~v~~~~~~nv~~~~----~-~~ 303 (898)
T COG5240 246 LLVRATVELLKENSQALLQL-----RPFLNSWLSDKFE------------MVFLEAARAVCALSEENVGSQF----V-DQ 303 (898)
T ss_pred ehHHHHHHHHHhChHHHHHH-----HHHHHHHhcCcch------------hhhHHHHHHHHHHHHhccCHHH----H-HH
Confidence 33444444444 44444443 3556666666555 88999999999888 22 222 1 13
Q ss_pred ChHHHHHHHhccccCCCccchhHHHHHHHHHHHHHhhcCchhhhHHHhcCCcHHHHHhhcCCCHHHHHHHHHHHHHhhcc
Q 005044 158 ALSHLVNLLKRHMDSNCSRAVNSVIRRAADAITNLAHENSSIKTRVRMEGGIPPLVELLEFTDTKVQRAAAGALRTLAFK 237 (717)
Q Consensus 158 ~i~~L~~lL~~~~~~~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~L~~~ 237 (717)
.+..|-.+|+.... ..+..|+++|..++...|..-. -+-+-+-.++.+.+..+...|...|..-.
T Consensus 304 ~vs~L~~fL~s~rv--------~~rFsA~Riln~lam~~P~kv~-----vcN~evEsLIsd~Nr~IstyAITtLLKTG-- 368 (898)
T COG5240 304 TVSSLRTFLKSTRV--------VLRFSAMRILNQLAMKYPQKVS-----VCNKEVESLISDENRTISTYAITTLLKTG-- 368 (898)
T ss_pred HHHHHHHHHhcchH--------HHHHHHHHHHHHHHhhCCceee-----ecChhHHHHhhcccccchHHHHHHHHHcC--
Confidence 46777788887765 7888999999999986664211 12244555666777777777766665543
Q ss_pred ChhhHHHHHhcCCHHHHHHHHcCCCHHHHHHHHHHHHHhhcCChHHHHHHHHcCChHHHHHhhc-cCChHHHHHHHHHHH
Q 005044 238 NDENKNQIVECNALPTLILMLRSEDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLS-SCCSESQREAALLLG 316 (717)
Q Consensus 238 ~~~~~~~~~~~g~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~l~~L~~ll~-~~~~~~~~~a~~~L~ 316 (717)
.++....++.. ++.++.-+.++-.-+...|++.|+.+. +.-+.. .+..|...|. .+..+.++.+..++.
T Consensus 369 t~e~idrLv~~--I~sfvhD~SD~FKiI~ida~rsLsl~F---p~k~~s-----~l~FL~~~L~~eGg~eFK~~~Vdais 438 (898)
T COG5240 369 TEETIDRLVNL--IPSFVHDMSDGFKIIAIDALRSLSLLF---PSKKLS-----YLDFLGSSLLQEGGLEFKKYMVDAIS 438 (898)
T ss_pred chhhHHHHHHH--HHHHHHhhccCceEEeHHHHHHHHhhC---cHHHHH-----HHHHHHHHHHhcccchHHHHHHHHHH
Confidence 45555555542 555555555555555566666665553 322222 2444544443 345677778888888
Q ss_pred HHhcCChhhHHHHHhcCChHHHHHHhcCCCHHHHHHHHHHHHHhhcCCCCchhhHhcCChHHHHHhhcCCChhHHHHHHH
Q 005044 317 QFAATDSDCKVHIVQRGAVRPLIEMLQSPDVQLREMSAFALGRLAQDMHNQAGIAHNGGLVPLLKLLDSKNGSLQHNAAF 396 (717)
Q Consensus 317 ~l~~~~~~~~~~l~~~~~l~~L~~~l~~~~~~v~~~a~~~L~~l~~~~~~~~~l~~~~~l~~L~~ll~~~~~~v~~~a~~ 396 (717)
.+....|+.+... +..|+..+.+... -+-++..|+-|.+..+....- ...+..+.+-+--.+.-||..|..
T Consensus 439 d~~~~~p~skEra-----Le~LC~fIEDcey--~~I~vrIL~iLG~EgP~a~~P--~~yvrhIyNR~iLEN~ivRsaAv~ 509 (898)
T COG5240 439 DAMENDPDSKERA-----LEVLCTFIEDCEY--HQITVRILGILGREGPRAKTP--GKYVRHIYNRLILENNIVRSAAVQ 509 (898)
T ss_pred HHHhhCchHHHHH-----HHHHHHHHhhcch--hHHHHHHHHHhcccCCCCCCc--chHHHHHHHHHHHhhhHHHHHHHH
Confidence 8777666665543 4567777765322 223555666665532221110 012333444444456788899999
Q ss_pred HHHhccCCCcchHHHHHhcCccccccchhHHhhhHHHHHHHHHHHHHHhhhchHHHHHHHHhhcchhHHHHHHHHHHhcc
Q 005044 397 ALYGLADNEDNVADFIRVGGVQKLQDGEFIVQATKDCVAKTLKRLEEKIHGRVLNHLLYLMRVAEKGVQRRVALALAHLC 476 (717)
Q Consensus 397 ~L~~l~~~~~~~~~l~~~~~i~~L~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~L~~ll~~~~~~v~~~a~~aL~~l~ 476 (717)
+|...+.+.+.... ...+...|-.++.+.+.++|..|..+|.++-
T Consensus 510 aLskf~ln~~d~~~-----------------------------------~~sv~~~lkRclnD~DdeVRdrAsf~l~~~~ 554 (898)
T COG5240 510 ALSKFALNISDVVS-----------------------------------PQSVENALKRCLNDQDDEVRDRASFLLRNMR 554 (898)
T ss_pred HHHHhccCcccccc-----------------------------------HHHHHHHHHHHhhcccHHHHHHHHHHHHhhh
Confidence 99888765443111 1113444667788889999999999998885
Q ss_pred CC
Q 005044 477 SP 478 (717)
Q Consensus 477 ~~ 478 (717)
..
T Consensus 555 ~~ 556 (898)
T COG5240 555 LS 556 (898)
T ss_pred hh
Confidence 33
No 129
>PF07707 BACK: BTB And C-terminal Kelch; InterPro: IPR011705 This domain is found associated with (IPR000210 from INTERPRO) and (IPR006652 from INTERPRO). BTB (broad-complex, tramtrack and bric a brac) is a Kelch related domain, also known as the POZ domain []. BTB proteins are divided into subgroups depending on what domain lies at the C terminus. Despite the divergence in sequences, the BTB fold is highly conserved. BTB-Kelch proteins have Kelch repeats that form a beta-propeller that can interact with actin filaments []. BTB and C-terminal Kelch (BACK) together constitute a novel conserved domain, which is thought to have a possible role in substrate orientation in Cullin3-based E3 ligase complexes. Four domains, namely the BTB domain, a kelch domain, a BACK domain, and an intervening region (IVR) make up the aryl hydrocarbon receptor (AHR); a ligand-activated transcription factor []. This entry represents the domain associated with BTB and Kelch.; PDB: 3HVE_A 2EQX_A 3I3N_A 4AP2_A 4APF_A.
Probab=97.67 E-value=0.0001 Score=60.69 Aligned_cols=50 Identities=24% Similarity=0.410 Sum_probs=43.3
Q ss_pred HHHHHHHHHHcCcHHHHHHHHHHHHHhHHHhcCCchhhhchhhcHHHHHH
Q 005044 652 VSSMYELSEAFHAISLRHTCILYIMEHFDKLSTRPGHSNLIQRIIPEIHN 701 (717)
Q Consensus 652 ~~~~~~~a~~~~~~~L~~~~~~~i~~~~~~~~~~~~f~~l~~~~~~~l~~ 701 (717)
|+.++.+|..|+..+|.+.|.+||.+||.++.++++|.+||.+.+..+++
T Consensus 1 C~~i~~~A~~~~~~~L~~~~~~~i~~nf~~v~~~~~f~~L~~~~l~~iL~ 50 (103)
T PF07707_consen 1 CLSIYRLAEKYGLEELAEACLRFIAKNFNEVSKSDEFLELPFDQLIEILS 50 (103)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHHHHTHHHHTTSHHHHCS-HHHHHHHHH
T ss_pred ChhHHHHHHHcChHHHHHHHHHHHHHHHHHHccchhhhcCCHHHHHHHHh
Confidence 78999999999999999999999999999999999999997665555544
No 130
>PF12348 CLASP_N: CLASP N terminal; InterPro: IPR024395 This domain is found in the N-terminal region of CLIP-associated proteins (CLASPs), which are widely conserved microtubule plus-end-tracking proteins that regulate the stability of dynamic microtubules [, ]. The domain is also found in other proteins involved in microtubule binding, including STU1, MOR1 and spindle pole body component Alp14.; PDB: 2QK2_A.
Probab=97.66 E-value=0.00072 Score=65.07 Aligned_cols=180 Identities=17% Similarity=0.150 Sum_probs=115.3
Q ss_pred hhHHHHHHHHHHHHHhhcC--chhhhHHHh--cCCcHHHHHhhcCCCHHHHHHHHHHHHHhhccChhhHHHHHhcCCHHH
Q 005044 178 VNSVIRRAADAITNLAHEN--SSIKTRVRM--EGGIPPLVELLEFTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPT 253 (717)
Q Consensus 178 ~~~~~~~a~~~L~~l~~~~--~~~~~~~~~--~~~i~~L~~ll~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~g~i~~ 253 (717)
.|+.+..++.-|..++.++ ......+.. ...+..+...+.+....+...|+.++..++..-...-....+ .++|.
T Consensus 20 ~W~~r~~al~~L~~l~~~~~~~~~~~~~~~~l~~~~~~i~~~l~d~Rs~v~~~A~~~l~~l~~~l~~~~~~~~~-~~l~~ 98 (228)
T PF12348_consen 20 DWEERVEALQKLRSLIKGNAPEDFPPDFVECLRQLLDAIIKQLSDLRSKVSKTACQLLSDLARQLGSHFEPYAD-ILLPP 98 (228)
T ss_dssp SHHHHHHHHHHHHHHHHH-B-----HHHHHHHH---HHHHH-S-HH---HHHHHHHHHHHHHHHHGGGGHHHHH-HHHHH
T ss_pred CHHHHHHHHHHHHHHHHcCCccccHHHHHHHHHHhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhHhHHHHHH-HHHHH
Confidence 4789999999999998876 222222221 144566677777777889999999999998744444333433 37899
Q ss_pred HHHHHcCCCHHHHHHHHHHHHHhhcCChHHHHHHHHcCChHHHHHhhccCChHHHHHHHHHHHHHhcCCh---hh-HHHH
Q 005044 254 LILMLRSEDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLSSCCSESQREAALLLGQFAATDS---DC-KVHI 329 (717)
Q Consensus 254 L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~l~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~---~~-~~~l 329 (717)
|++.+.++...++..|..+|..++...... ..+ .++.+...+.+.++.+|..++..+..+....+ .. ....
T Consensus 99 Ll~~~~~~~~~i~~~a~~~L~~i~~~~~~~-~~~----~~~~l~~~~~~Kn~~vR~~~~~~l~~~l~~~~~~~~~l~~~~ 173 (228)
T PF12348_consen 99 LLKKLGDSKKFIREAANNALDAIIESCSYS-PKI----LLEILSQGLKSKNPQVREECAEWLAIILEKWGSDSSVLQKSA 173 (228)
T ss_dssp HHHGGG---HHHHHHHHHHHHHHHTTS-H---HH----HHHHHHHHTT-S-HHHHHHHHHHHHHHHTT-----GGG--HH
T ss_pred HHHHHccccHHHHHHHHHHHHHHHHHCCcH-HHH----HHHHHHHHHhCCCHHHHHHHHHHHHHHHHHccchHhhhcccc
Confidence 999999999999999999999998764411 111 15667778888999999999998888865443 11 1111
Q ss_pred HhcCChHHHHHHhcCCCHHHHHHHHHHHHHhhcC
Q 005044 330 VQRGAVRPLIEMLQSPDVQLREMSAFALGRLAQD 363 (717)
Q Consensus 330 ~~~~~l~~L~~~l~~~~~~v~~~a~~~L~~l~~~ 363 (717)
.-..+++.+...+.+.++++|..|-.++..+...
T Consensus 174 ~~~~l~~~l~~~l~D~~~~VR~~Ar~~~~~l~~~ 207 (228)
T PF12348_consen 174 FLKQLVKALVKLLSDADPEVREAARECLWALYSH 207 (228)
T ss_dssp HHHHHHHHHHHHHTSS-HHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHH
Confidence 1134778889999999999999999999998653
No 131
>KOG0567 consensus HEAT repeat-containing protein [General function prediction only]
Probab=97.64 E-value=0.0064 Score=56.53 Aligned_cols=245 Identities=21% Similarity=0.249 Sum_probs=128.7
Q ss_pred HHHHHHHHHHHHHHhhcChhhHHHHHhCCChHHHHHhhcCCCCCccccCCCccchHHHhHHHHHHHHhcCChhhHHHHHh
Q 005044 76 DRAAAKRATHVLAELAKNEEVVNWIVEGGAVPALVKHLQAPPTSEADRNLKPFEHEVEKGSAFALGLLAVKPEHQQLIVD 155 (717)
Q Consensus 76 ~~~~~~~a~~~L~~l~~~~~~~~~~~~~g~i~~L~~lL~~~~~~~~~~~~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~ 155 (717)
...-+..|+..|.++..... +..+.+...+++. ..+...+.+|+...+
T Consensus 18 ~l~~r~rALf~Lr~l~~~~~----------i~~i~ka~~d~s~------------llkhe~ay~LgQ~~~---------- 65 (289)
T KOG0567|consen 18 PLQNRFRALFNLRNLLGPAA----------IKAITKAFIDDSA------------LLKHELAYVLGQMQD---------- 65 (289)
T ss_pred HHHHHHHHHHhhhccCChHH----------HHHHHHhcccchh------------hhccchhhhhhhhcc----------
Confidence 33457788888777665211 3333333333322 344445555554432
Q ss_pred CCChHHHHHHHhccccCCCccchhHHHHHHHHHHHHHhhcCchhhhHHHhcCCcHHHHHhhcCCCHHHHHHHHHHHHHhh
Q 005044 156 NGALSHLVNLLKRHMDSNCSRAVNSVIRRAADAITNLAHENSSIKTRVRMEGGIPPLVELLEFTDTKVQRAAAGALRTLA 235 (717)
Q Consensus 156 ~~~i~~L~~lL~~~~~~~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~L~ 235 (717)
..+++.++..|.+.+..+ -++..|..+|.++.. .+.++.+-+..+++-..+++.+..++..+-
T Consensus 66 ~~Av~~l~~vl~desq~p------mvRhEAaealga~~~-----------~~~~~~l~k~~~dp~~~v~ETc~lAi~rle 128 (289)
T KOG0567|consen 66 EDAVPVLVEVLLDESQEP------MVRHEAAEALGAIGD-----------PESLEILTKYIKDPCKEVRETCELAIKRLE 128 (289)
T ss_pred chhhHHHHHHhcccccch------HHHHHHHHHHHhhcc-----------hhhHHHHHHHhcCCccccchHHHHHHHHHH
Confidence 234566666665544432 445556666665431 123344445455555556555555555553
Q ss_pred ccChhhH----HHH--------HhcCCHHHHHHHHcCCC-HH-HHHHHHHHHHHhhcCChHHHHHHHHcCChHHHHHhhc
Q 005044 236 FKNDENK----NQI--------VECNALPTLILMLRSED-SA-IHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLS 301 (717)
Q Consensus 236 ~~~~~~~----~~~--------~~~g~i~~L~~ll~~~~-~~-v~~~a~~~L~~l~~~~~~~~~~~~~~g~l~~L~~ll~ 301 (717)
..+.-.. ... ...+-+..+-..|.+.. +. -|..|...|.|+- .++ .+..|.+-+.
T Consensus 129 ~~~~~~~~~~~~p~~SvdPa~p~~~ssv~~lr~~lld~t~~l~~Ry~amF~LRn~g--~Ee---------aI~al~~~l~ 197 (289)
T KOG0567|consen 129 WKDIIDKIANSSPYISVDPAPPANLSSVHELRAELLDETKPLFERYRAMFYLRNIG--TEE---------AINALIDGLA 197 (289)
T ss_pred HhhccccccccCccccCCCCCccccccHHHHHHHHHhcchhHHHHHhhhhHhhccC--cHH---------HHHHHHHhcc
Confidence 2110000 000 01111333333333322 22 2445556666652 222 2455666666
Q ss_pred cCChHHHHHHHHHHHHHhcCChhhHHHHHhcCChHHHHHHhcC--CCHHHHHHHHHHHHHhhcCCCCchhhHhcCChHHH
Q 005044 302 SCCSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQS--PDVQLREMSAFALGRLAQDMHNQAGIAHNGGLVPL 379 (717)
Q Consensus 302 ~~~~~~~~~a~~~L~~l~~~~~~~~~~l~~~~~l~~L~~~l~~--~~~~v~~~a~~~L~~l~~~~~~~~~l~~~~~l~~L 379 (717)
.++.-.|..++.+++.+-+ .-.++.|.+.|.+ .++-+|..|+.+|+.++.. ..++.|
T Consensus 198 ~~SalfrhEvAfVfGQl~s-----------~~ai~~L~k~L~d~~E~pMVRhEaAeALGaIa~e----------~~~~vL 256 (289)
T KOG0567|consen 198 DDSALFRHEVAFVFGQLQS-----------PAAIPSLIKVLLDETEHPMVRHEAAEALGAIADE----------DCVEVL 256 (289)
T ss_pred cchHHHHHHHHHHHhhccc-----------hhhhHHHHHHHHhhhcchHHHHHHHHHHHhhcCH----------HHHHHH
Confidence 6777778888888888742 1246777777754 5777888888888887653 246667
Q ss_pred HHhhcCCChhHHHHHHHHHHhc
Q 005044 380 LKLLDSKNGSLQHNAAFALYGL 401 (717)
Q Consensus 380 ~~ll~~~~~~v~~~a~~~L~~l 401 (717)
.+.+.+..+-|++.+..+|.-+
T Consensus 257 ~e~~~D~~~vv~esc~valdm~ 278 (289)
T KOG0567|consen 257 KEYLGDEERVVRESCEVALDML 278 (289)
T ss_pred HHHcCCcHHHHHHHHHHHHHHH
Confidence 7777777777777666666543
No 132
>PF13646 HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2IAE_A 3B2A_A.
Probab=97.64 E-value=0.00034 Score=55.54 Aligned_cols=86 Identities=35% Similarity=0.506 Sum_probs=69.9
Q ss_pred HHHHHHHH-cCCCHHHHHHHHHHHHHhhcCChHHHHHHHHcCChHHHHHhhccCChHHHHHHHHHHHHHhcCChhhHHHH
Q 005044 251 LPTLILML-RSEDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLSSCCSESQREAALLLGQFAATDSDCKVHI 329 (717)
Q Consensus 251 i~~L~~ll-~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~l~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~l 329 (717)
++.|++.| +++++.++..++++|+.+- ++ ..++.|..++.++++.++..|+++|+.+.
T Consensus 1 i~~L~~~l~~~~~~~vr~~a~~~L~~~~--~~---------~~~~~L~~~l~d~~~~vr~~a~~aL~~i~---------- 59 (88)
T PF13646_consen 1 IPALLQLLQNDPDPQVRAEAARALGELG--DP---------EAIPALIELLKDEDPMVRRAAARALGRIG---------- 59 (88)
T ss_dssp HHHHHHHHHTSSSHHHHHHHHHHHHCCT--HH---------HHHHHHHHHHTSSSHHHHHHHHHHHHCCH----------
T ss_pred CHHHHHHHhcCCCHHHHHHHHHHHHHcC--CH---------hHHHHHHHHHcCCCHHHHHHHHHHHHHhC----------
Confidence 57888988 8889999999999999652 12 24889999999999999999999999873
Q ss_pred HhcCChHHHHHHhcCC-CHHHHHHHHHHHH
Q 005044 330 VQRGAVRPLIEMLQSP-DVQLREMSAFALG 358 (717)
Q Consensus 330 ~~~~~l~~L~~~l~~~-~~~v~~~a~~~L~ 358 (717)
....++.|.+++.++ +..+|..|+.+|+
T Consensus 60 -~~~~~~~L~~~l~~~~~~~vr~~a~~aL~ 88 (88)
T PF13646_consen 60 -DPEAIPALIKLLQDDDDEVVREAAAEALG 88 (88)
T ss_dssp -HHHTHHHHHHHHTC-SSHHHHHHHHHHHH
T ss_pred -CHHHHHHHHHHHcCCCcHHHHHHHHhhcC
Confidence 234788999999774 5667899888874
No 133
>KOG2838 consensus Uncharacterized conserved protein, contains BTB/POZ domain [General function prediction only]
Probab=97.63 E-value=8.7e-05 Score=67.93 Aligned_cols=88 Identities=17% Similarity=0.274 Sum_probs=68.0
Q ss_pred CCCCccEEEEEcCeEeehhHHHHhhccHHHHHhhcCCCCCCCCc--ceEcCCCCHHHHHHHHHHHhcCccc---cchhhH
Q 005044 546 NATLSDVTFLVEGRRFYAHRICLLASSDAFRAMFDGGYREKDAR--DIEIPNIRWEVFELMMRFIYTGSVD---VTLDIA 620 (717)
Q Consensus 546 ~~~~~Dv~~~~~~~~~~~h~~il~~~s~~f~~~~~~~~~e~~~~--~i~l~~~~~~~~~~~l~~~Yt~~~~---~~~~~~ 620 (717)
.....|+-+......|++||.+|++||+||+.+.++........ .+..-+++..+|+.+|+|+|||..- +...|+
T Consensus 127 ~k~c~dldiiFkeTcfpahRA~laaRCpffK~l~nsd~e~~ae~i~dik~ag~dm~~feafLh~l~tgEfgmEd~~fqn~ 206 (401)
T KOG2838|consen 127 RKVCGDLDIIFKETCFPAHRAFLAARCPFFKILANSDEEPEAEDICDIKFAGFDMDAFEAFLHSLITGEFGMEDLGFQNS 206 (401)
T ss_pred eeeeccceeeeeeccchHHHHHHHhhCcchhhhccCCCCcchhhhhhhhhhccChHHHHHHHHHHHhcccchhhcCCchH
Confidence 44677898999999999999999999999999887654433333 2444578999999999999999874 344566
Q ss_pred HHHHHHHHhhChH
Q 005044 621 QDLLRAADQYLLE 633 (717)
Q Consensus 621 ~~ll~~A~~~~~~ 633 (717)
.-+-+++.-|+.+
T Consensus 207 diL~QL~edFG~~ 219 (401)
T KOG2838|consen 207 DILEQLCEDFGCF 219 (401)
T ss_pred HHHHHHHHhhCCc
Confidence 6666777777653
No 134
>KOG4535 consensus HEAT and armadillo repeat-containing protein [General function prediction only]
Probab=97.62 E-value=0.013 Score=58.98 Aligned_cols=302 Identities=17% Similarity=0.147 Sum_probs=146.5
Q ss_pred HHHHHHHHHHHHHhhcCchhhhHHHhcCCcHHHHHhhcCCCHHHHHHHHHHHHHhhcc-----ChhhHHHHHhcCCHHHH
Q 005044 180 SVIRRAADAITNLAHENSSIKTRVRMEGGIPPLVELLEFTDTKVQRAAAGALRTLAFK-----NDENKNQIVECNALPTL 254 (717)
Q Consensus 180 ~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~L~~~-----~~~~~~~~~~~g~i~~L 254 (717)
.++..+..+|..++..-.-.+..+++ ....+...+.+..+.++..+..++..+..+ .|+..+.-...|.+-.+
T Consensus 270 ~~rle~~qvl~~~a~~~~~~~~~~~~--l~RvI~~~~~~~~p~~~l~~a~ll~~lg~~lv~~~~P~~~k~~~q~~~fw~~ 347 (728)
T KOG4535|consen 270 PMRLEALQVLTLLARYFSMTQAYLME--LGRVICKCMGEADPSIQLHGAKLLEELGTGLIQQYKPDSTKAPDQRAPFWTM 347 (728)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHccCCCCChHHHHHHHHHHHHHHHHHhhhcCCCcccchhhhccHHHH
Confidence 55566666666666533333322221 112222334456788888888888877542 22222111111211111
Q ss_pred H------HHH-cCCCHHHHHHHHHHHHHhhcCChHHHHHHHHcCChHHHHHhhcc----CChHHHHHHHHHHHHHhcCCh
Q 005044 255 I------LML-RSEDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLSS----CCSESQREAALLLGQFAATDS 323 (717)
Q Consensus 255 ~------~ll-~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~l~~L~~ll~~----~~~~~~~~a~~~L~~l~~~~~ 323 (717)
. ... .+..+..+..+|.++.++....... ...|--..+..++.. .+.-++.+|..++.-..-+..
T Consensus 348 ~l~~p~~~~~YDs~~~Tl~~s~Cdals~i~~~~f~~----lpn~~~T~~~~Fl~GC~d~~~~lv~~aA~Ra~~VyVLHp~ 423 (728)
T KOG4535|consen 348 MLNGPLPRALYDSEHPTLQASACDALSSILPEAFSN----LPNDRQTLCITFLLGCNDSKNRLVKAAASRALGVYVLHPC 423 (728)
T ss_pred HccCCChhhhhhhcCCCchhHHHHHHhhcCchhhcC----CCCcchhhhHHHHhcccchHHHHHHHHHHhhceeEEeccc
Confidence 1 011 1223345666777777774321100 001111111222222 222344455555544432222
Q ss_pred hhHHHHHhcCChHHHHHHhcCCCHHHHHHHHHHHHHhhc----CCCCchhhHhc--C-ChHHHHHhh---cCCChhHHHH
Q 005044 324 DCKVHIVQRGAVRPLIEMLQSPDVQLREMSAFALGRLAQ----DMHNQAGIAHN--G-GLVPLLKLL---DSKNGSLQHN 393 (717)
Q Consensus 324 ~~~~~l~~~~~l~~L~~~l~~~~~~v~~~a~~~L~~l~~----~~~~~~~l~~~--~-~l~~L~~ll---~~~~~~v~~~ 393 (717)
-......-.+....++..+.+..-..|..+.|+++|++. +-++-....+. | .+..+.+.. ...+..|+.+
T Consensus 424 lr~d~~fv~~aa~~il~sl~d~~ln~r~KaawtlgnITdAL~~~~Ps~~s~~eR~sg~ll~~~~~~A~~~~Ad~dkV~~n 503 (728)
T KOG4535|consen 424 LRQDVIFVADAANAILMSLEDKSLNVRAKAAWSLGNITDALIVNMPTPDSFQERFSGLLLLKMLRSAIEASADKDKVKSN 503 (728)
T ss_pred hhhhHHHHHHHHHHHHHHhhhHhHhHHHHHHHHhhhhHHHHHcCCCCchHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhH
Confidence 222223334455667777777777889999999999984 11221111111 1 111222222 2346678888
Q ss_pred HHHHHHhccCCCcchHHHHHhcCccccccchhHHhhhHHHHHHHHHHHHHHhhhchHHHHHHH-HhhcchhHHHHHHHHH
Q 005044 394 AAFALYGLADNEDNVADFIRVGGVQKLQDGEFIVQATKDCVAKTLKRLEEKIHGRVLNHLLYL-MRVAEKGVQRRVALAL 472 (717)
Q Consensus 394 a~~~L~~l~~~~~~~~~l~~~~~i~~L~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~L~~l-l~~~~~~v~~~a~~aL 472 (717)
+..+|.|+...-.. +.+.+. .. ...+.+..++.. .-.....||-+++.++
T Consensus 504 avraLgnllQvlq~---i~~~~~-------------------------~e-~~~~~~~~l~~~v~~~~~~kV~WNaCya~ 554 (728)
T KOG4535|consen 504 AVRALGNLLQFLQP---IEKPTF-------------------------AE-IIEESIQALISTVLTEAAMKVRWNACYAM 554 (728)
T ss_pred HHHHHhhHHHHHHH---hhhccH-------------------------HH-HHHHHHHhcccceecccccccchHHHHHH
Confidence 88888887642111 111000 00 000111111111 1223678999999999
Q ss_pred HhccCCCCC--ceeeecCCCHHHHHHHhc-CCCchhhhhhHHHHHHh
Q 005044 473 AHLCSPDDQ--RTIFIDGGGLELLLGLLG-STNPKQQLDGAVALFKL 516 (717)
Q Consensus 473 ~~l~~~~~~--~~~~~~~~~l~~L~~ll~-~~~~~v~~~a~~~l~~L 516 (717)
+|+..++.. +..-......+.|..|+. ..|-.+|..|+.+|..-
T Consensus 555 gNLfkn~a~~lq~~~wA~~~F~~L~~Lv~~~~NFKVRi~AA~aL~vp 601 (728)
T KOG4535|consen 555 GNLFKNPALPLQTAPWASQAFNALTSLVTSCKNFKVRIRAAAALSVP 601 (728)
T ss_pred HHhhcCccccccCCCchHHHHHHHHHHHHHhccceEeehhhhhhcCC
Confidence 999887652 222223345678888876 49999999999887543
No 135
>KOG1943 consensus Beta-tubulin folding cofactor D [Posttranslational modification, protein turnover, chaperones]
Probab=97.61 E-value=0.0095 Score=66.03 Aligned_cols=261 Identities=20% Similarity=0.203 Sum_probs=153.6
Q ss_pred CCChHHHHHhhcCCCCCccccCCCccchHHHhHHHHHHHHhc-CChhhHHHHHhCCChHHHHHHHhccccCCCccchhHH
Q 005044 103 GGAVPALVKHLQAPPTSEADRNLKPFEHEVEKGSAFALGLLA-VKPEHQQLIVDNGALSHLVNLLKRHMDSNCSRAVNSV 181 (717)
Q Consensus 103 ~g~i~~L~~lL~~~~~~~~~~~~~~~~~~v~~~a~~~L~~l~-~~~~~~~~~~~~~~i~~L~~lL~~~~~~~~~~~~~~~ 181 (717)
++++..|+..|++.+. .||=.|++-++.++ ..|.. ....++...++++...+++ ..
T Consensus 340 E~vie~Lls~l~d~dt------------~VrWSaAKg~grvt~rlp~~----Lad~vi~svid~~~p~e~~-------~a 396 (1133)
T KOG1943|consen 340 EFVIEHLLSALSDTDT------------VVRWSAAKGLGRVTSRLPPE----LADQVIGSVIDLFNPAEDD-------SA 396 (1133)
T ss_pred HHHHHHHHHhccCCcc------------hhhHHHHHHHHHHHccCcHH----HHHHHHHHHHHhcCcCCch-------hH
Confidence 3567788888888877 88889999999999 44421 1123455666655554432 56
Q ss_pred HHHHHHHHHHHhhcCchhhhHHHhcCCcHHHHHhhc--------CCCHHHHHHHHHHHHHhhccChhh-HHHHHhcCCHH
Q 005044 182 IRRAADAITNLAHENSSIKTRVRMEGGIPPLVELLE--------FTDTKVQRAAAGALRTLAFKNDEN-KNQIVECNALP 252 (717)
Q Consensus 182 ~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~--------~~~~~v~~~a~~~L~~L~~~~~~~-~~~~~~~g~i~ 252 (717)
...++-+|+.++...--....+ ..++|.++.-|. +....||..||.+++.++...... .+.+...=.-.
T Consensus 397 WHgacLaLAELA~rGlLlps~l--~dVvplI~kaL~Yd~~~G~~s~G~~VRDaAcY~~WAf~Rays~~~l~p~l~~L~s~ 474 (1133)
T KOG1943|consen 397 WHGACLALAELALRGLLLPSLL--EDVVPLILKALHYDVRRGQHSVGQHVRDAACYVCWAFARAYSPSDLKPVLQSLASA 474 (1133)
T ss_pred HHHHHHHHHHHHhcCCcchHHH--HHHHHHHHHHhhhhhhhcccccccchHHHHHHHHHHHHhcCChhhhhHHHHHHHHH
Confidence 6788889998886433222222 135566665553 234679999999999998643322 11122211112
Q ss_pred HHHHHHcCCCHHHHHHHHHHHHHhhcCChHHHHHHHHcCChHHHHHhhccCChHHHHHHHHHHHHHhcCChhhHHHHHhc
Q 005044 253 TLILMLRSEDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLSSCCSESQREAALLLGQFAATDSDCKVHIVQR 332 (717)
Q Consensus 253 ~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~l~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~l~~~ 332 (717)
.|+..+-+++...|+.|..++-.......+. ..|++. +.....-.-..+.++-..++.-....+..+..++
T Consensus 475 LL~~AlFDrevncRRAAsAAlqE~VGR~~n~------p~Gi~L-is~~dy~sV~~rsNcy~~l~~~ia~~~~y~~~~f-- 545 (1133)
T KOG1943|consen 475 LLIVALFDREVNCRRAASAALQENVGRQGNF------PHGISL-ISTIDYFSVTNRSNCYLDLCVSIAEFSGYREPVF-- 545 (1133)
T ss_pred HHHHHhcCchhhHhHHHHHHHHHHhccCCCC------CCchhh-hhhcchhhhhhhhhHHHHHhHHHHhhhhHHHHHH--
Confidence 3344556788889999999987775432221 112221 1111111122233333333332233333333332
Q ss_pred CChHHHHHH-hcCCCHHHHHHHHHHHHHhhcCCCCchhhHhcCChHHHHHhhcCCChhHHHHHHHHHHhccC
Q 005044 333 GAVRPLIEM-LQSPDVQLREMSAFALGRLAQDMHNQAGIAHNGGLVPLLKLLDSKNGSLQHNAAFALYGLAD 403 (717)
Q Consensus 333 ~~l~~L~~~-l~~~~~~v~~~a~~~L~~l~~~~~~~~~l~~~~~l~~L~~ll~~~~~~v~~~a~~~L~~l~~ 403 (717)
..++.. +.+-+..+|+.++++|.+|+.. ..+....+.+++++....+.+...+..+..+.+.+..
T Consensus 546 ---~~L~t~Kv~HWd~~irelaa~aL~~Ls~~---~pk~~a~~~L~~lld~~ls~~~~~r~g~~la~~ev~~ 611 (1133)
T KOG1943|consen 546 ---NHLLTKKVCHWDVKIRELAAYALHKLSLT---EPKYLADYVLPPLLDSTLSKDASMRHGVFLAAGEVIG 611 (1133)
T ss_pred ---HHHHhcccccccHHHHHHHHHHHHHHHHh---hHHhhcccchhhhhhhhcCCChHHhhhhHHHHHHHHH
Confidence 222222 4556899999999999998853 2344556778889988888888888777766666543
No 136
>PF13646 HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2IAE_A 3B2A_A.
Probab=97.61 E-value=0.00019 Score=57.04 Aligned_cols=86 Identities=34% Similarity=0.448 Sum_probs=69.0
Q ss_pred cHHHHHhh-cCCCHHHHHHHHHHHHHhhccChhhHHHHHhcCCHHHHHHHHcCCCHHHHHHHHHHHHHhhcCChHHHHHH
Q 005044 209 IPPLVELL-EFTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSEDSAIHYEAVGVIGNLVHSSPNIKKEV 287 (717)
Q Consensus 209 i~~L~~ll-~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~ 287 (717)
++.|++.+ +++++.+|..++++|..+-. + .+++.|+.+++++++.|+..|+++|+.+-
T Consensus 1 i~~L~~~l~~~~~~~vr~~a~~~L~~~~~--~---------~~~~~L~~~l~d~~~~vr~~a~~aL~~i~---------- 59 (88)
T PF13646_consen 1 IPALLQLLQNDPDPQVRAEAARALGELGD--P---------EAIPALIELLKDEDPMVRRAAARALGRIG---------- 59 (88)
T ss_dssp HHHHHHHHHTSSSHHHHHHHHHHHHCCTH--H---------HHHHHHHHHHTSSSHHHHHHHHHHHHCCH----------
T ss_pred CHHHHHHHhcCCCHHHHHHHHHHHHHcCC--H---------hHHHHHHHHHcCCCHHHHHHHHHHHHHhC----------
Confidence 47788888 88999999999999996542 1 35899999999999999999999999882
Q ss_pred HHcCChHHHHHhhccCC-hHHHHHHHHHHH
Q 005044 288 LAAGALQPVIGLLSSCC-SESQREAALLLG 316 (717)
Q Consensus 288 ~~~g~l~~L~~ll~~~~-~~~~~~a~~~L~ 316 (717)
....++.|.+++.+++ ..++..|+.+|+
T Consensus 60 -~~~~~~~L~~~l~~~~~~~vr~~a~~aL~ 88 (88)
T PF13646_consen 60 -DPEAIPALIKLLQDDDDEVVREAAAEALG 88 (88)
T ss_dssp -HHHTHHHHHHHHTC-SSHHHHHHHHHHHH
T ss_pred -CHHHHHHHHHHHcCCCcHHHHHHHHhhcC
Confidence 1336889999998765 556888888774
No 137
>KOG0915 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.58 E-value=0.022 Score=65.55 Aligned_cols=416 Identities=16% Similarity=0.111 Sum_probs=196.6
Q ss_pred HHHHHHHHHHhhcC--hhhHHHHHhCCChHHHHHhhcCCCCCccccCCCccchHHHhHHHHHHHHhc-CChhhHHHHHhC
Q 005044 80 AKRATHVLAELAKN--EEVVNWIVEGGAVPALVKHLQAPPTSEADRNLKPFEHEVEKGSAFALGLLA-VKPEHQQLIVDN 156 (717)
Q Consensus 80 ~~~a~~~L~~l~~~--~~~~~~~~~~g~i~~L~~lL~~~~~~~~~~~~~~~~~~v~~~a~~~L~~l~-~~~~~~~~~~~~ 156 (717)
+.-|+..+..++.. .+-+..+ ...||.|.++=-+++. .|+.....+-..|. +.....+... .
T Consensus 974 k~GaAfGf~~i~~~a~~kl~p~l--~kLIPrLyRY~yDP~~------------~Vq~aM~sIW~~Li~D~k~~vd~y~-n 1038 (1702)
T KOG0915|consen 974 KKGAAFGFGAIAKQAGEKLEPYL--KKLIPRLYRYQYDPDK------------KVQDAMTSIWNALITDSKKVVDEYL-N 1038 (1702)
T ss_pred ccchhhchHHHHHHHHHhhhhHH--HHhhHHHhhhccCCcH------------HHHHHHHHHHHHhccChHHHHHHHH-H
Confidence 56666677776662 2222222 2357777776555544 77765555555555 4344333322 1
Q ss_pred CChHHHHHHHhccccCCCccchhHHHHHHHHHHHHHhhcCchhhhHHHhcCCcHHHHHhhcCCCHHHHHHH---HHHHHH
Q 005044 157 GALSHLVNLLKRHMDSNCSRAVNSVIRRAADAITNLAHENSSIKTRVRMEGGIPPLVELLEFTDTKVQRAA---AGALRT 233 (717)
Q Consensus 157 ~~i~~L~~lL~~~~~~~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a---~~~L~~ 233 (717)
.+++.|+.-|.+. -|.+++.+|-+|..|..+.+.....-.-......+.+...+-...+|.+| +.+|..
T Consensus 1039 eIl~eLL~~lt~k--------ewRVReasclAL~dLl~g~~~~~~~e~lpelw~~~fRvmDDIKEsVR~aa~~~~~~lsK 1110 (1702)
T KOG0915|consen 1039 EILDELLVNLTSK--------EWRVREASCLALADLLQGRPFDQVKEKLPELWEAAFRVMDDIKESVREAADKAARALSK 1110 (1702)
T ss_pred HHHHHHHHhccch--------hHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 2333344434332 25899999999999998655332111111223334444444345666655 444554
Q ss_pred hhcc--Ch---hhHHHHHhcCCHHHHHH-HHcCCCHHHHHHHHHHHHHhhcCChHHHHHHHHcCChHHHHHhhccCChHH
Q 005044 234 LAFK--ND---ENKNQIVECNALPTLIL-MLRSEDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLSSCCSES 307 (717)
Q Consensus 234 L~~~--~~---~~~~~~~~~g~i~~L~~-ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~l~~L~~ll~~~~~~~ 307 (717)
++.. +. ...+.+.+ .++|.|+. -.-+.-+++|..++.++..++.+.... -...-..+++.|+.....-.+.+
T Consensus 1111 l~vr~~d~~~~~~~~~~l~-~iLPfLl~~gims~v~evr~~si~tl~dl~Kssg~~-lkP~~~~LIp~ll~~~s~lE~~v 1188 (1702)
T KOG0915|consen 1111 LCVRICDVTNGAKGKEALD-IILPFLLDEGIMSKVNEVRRFSIGTLMDLAKSSGKE-LKPHFPKLIPLLLNAYSELEPQV 1188 (1702)
T ss_pred HHhhhcccCCcccHHHHHH-HHHHHHhccCcccchHHHHHHHHHHHHHHHHhchhh-hcchhhHHHHHHHHHccccchHH
Confidence 4421 11 11122222 23444432 111456799999999999998775542 11222456777777776654433
Q ss_pred HHH-----------HHHHHHH-HhcCChhhH-----HHHH----hcCChHHHHHHhcCC-CHHHHHHHHHHHHHhhcCCC
Q 005044 308 QRE-----------AALLLGQ-FAATDSDCK-----VHIV----QRGAVRPLIEMLQSP-DVQLREMSAFALGRLAQDMH 365 (717)
Q Consensus 308 ~~~-----------a~~~L~~-l~~~~~~~~-----~~l~----~~~~l~~L~~~l~~~-~~~v~~~a~~~L~~l~~~~~ 365 (717)
... +...++. .+...|-.. ...+ -..++|.+.++++.+ ....+..++..+..|+..-.
T Consensus 1189 LnYls~r~~~~e~ealDt~R~s~aksspmmeTi~~ci~~iD~~vLeelip~l~el~R~sVgl~Tkvg~A~fI~~L~~r~~ 1268 (1702)
T KOG0915|consen 1189 LNYLSLRLINIETEALDTLRASAAKSSPMMETINKCINYIDISVLEELIPRLTELVRGSVGLGTKVGCASFISLLVQRLG 1268 (1702)
T ss_pred HHHHHHhhhhhHHHHHHHHHHhhhcCCcHHHHHHHHHHhhhHHHHHHHHHHHHHHHhccCCCCcchhHHHHHHHHHHHhc
Confidence 221 1111111 111111100 0001 123556666666542 22334445555555553110
Q ss_pred CchhhHhcCChHHHHHhhcCCChhHHHHHHHHHHhccC--CCcchHHHHHhcCccccccchhHHhhhHHHHHHHHHHHHH
Q 005044 366 NQAGIAHNGGLVPLLKLLDSKNGSLQHNAAFALYGLAD--NEDNVADFIRVGGVQKLQDGEFIVQATKDCVAKTLKRLEE 443 (717)
Q Consensus 366 ~~~~l~~~~~l~~L~~ll~~~~~~v~~~a~~~L~~l~~--~~~~~~~l~~~~~i~~L~~~~~~~~~~~~~~~~~~~~l~~ 443 (717)
....-.....+..++..+.+.++.++.....+++.|+. .++....+.+.-.-..+.+..............+.+....
T Consensus 1269 ~emtP~sgKll~al~~g~~dRNesv~kafAsAmG~L~k~Ss~dq~qKLie~~l~~~l~k~es~~siscatis~Ian~s~e 1348 (1702)
T KOG0915|consen 1269 SEMTPYSGKLLRALFPGAKDRNESVRKAFASAMGYLAKFSSPDQMQKLIETLLADLLGKDESLKSISCATISNIANYSQE 1348 (1702)
T ss_pred cccCcchhHHHHHHhhccccccHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHhccCCCccchhHHHHHHHHHhhHH
Confidence 00001111123445555678899999999999998865 3434444444322222222111111111111111222222
Q ss_pred ---HhhhchHHHHHHHHhhcchhHHHHHHHHHHhccCCCCCceeeecCCCH-HHHHHHhcCCCchhhhhhHHHHHHhhhc
Q 005044 444 ---KIHGRVLNHLLYLMRVAEKGVQRRVALALAHLCSPDDQRTIFIDGGGL-ELLLGLLGSTNPKQQLDGAVALFKLANK 519 (717)
Q Consensus 444 ---~~~~~~~~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~~~~~~l-~~L~~ll~~~~~~v~~~a~~~l~~L~~~ 519 (717)
.+.+.++|-..--+...+.+.+..=-.....++.+...+..+.....+ +.....+++....++..++.++..++..
T Consensus 1349 ~Lkn~asaILPLiFLa~~ee~Ka~q~Lw~dvW~e~vsggagtvrl~~~eiLn~iceni~nn~~w~lr~q~Akai~~~a~~ 1428 (1702)
T KOG0915|consen 1349 MLKNYASAILPLIFLAMHEEEKANQELWNDVWAELVSGGAGTVRLYLLEILNLICENITNNESWKLRKQAAKAIRVIAEG 1428 (1702)
T ss_pred HHHhhHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhCCCCcchhhhhHHHHHHHHHHHhccchHHHHHHHHHHHHHHHccc
Confidence 223344444333333332333333333444555554433222233333 3444555556688899999999988876
Q ss_pred c
Q 005044 520 A 520 (717)
Q Consensus 520 ~ 520 (717)
.
T Consensus 1429 ~ 1429 (1702)
T KOG0915|consen 1429 L 1429 (1702)
T ss_pred c
Confidence 4
No 138
>PF09759 Atx10homo_assoc: Spinocerebellar ataxia type 10 protein domain; InterPro: IPR019156 This is the conserved C-terminal 100 residues of Ataxin-10. Ataxin-10 belongs to the family of armadillo repeat proteins and in solution it tends to form homotrimeric complexes, which associate via a tip-to-tip association in a horseshoe-shaped contact with the concave sides of the molecules facing each other. This domain may represent the homo-association site since that is located near the C terminus of Ataxin-10. The protein does not contain a signal sequence for secretion or any subcellular compartment confirming its cytoplasmic localisation, specifically to the olivocerebellar region [].
Probab=97.58 E-value=0.00036 Score=55.45 Aligned_cols=67 Identities=28% Similarity=0.323 Sum_probs=59.6
Q ss_pred HHHHHHHHHHHHhhcCchhhhHHHhcCCcHHHHHhhc--CCCHHHHHHHHHHHHHhhccChhhHHHHHh
Q 005044 181 VIRRAADAITNLAHENSSIKTRVRMEGGIPPLVELLE--FTDTKVQRAAAGALRTLAFKNDENKNQIVE 247 (717)
Q Consensus 181 ~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~--~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~ 247 (717)
++...+.+++|+|..++.++..+.+.|++|.++.... +.+|-+++.|.+++++|+.++++++..+.+
T Consensus 2 ~K~~lvrlianl~~~~~~~Qd~vr~~~Gi~liL~~c~iD~~nP~irEwai~aiRnL~e~n~eNQ~~I~~ 70 (102)
T PF09759_consen 2 FKRDLVRLIANLCYKNKEVQDLVRELGGIPLILSCCNIDDHNPFIREWAIFAIRNLCEGNPENQEFIAQ 70 (102)
T ss_pred cHHHHHHHHHHHHhCCHHHHHHHHHcCChHHHHHhcCCCcccHHHHHHHHHHHHHHHhCCHHHHHHHHh
Confidence 3566889999999999999999999999999998764 467999999999999999999999887765
No 139
>COG5231 VMA13 Vacuolar H+-ATPase V1 sector, subunit H [Energy production and conversion]
Probab=97.56 E-value=0.0052 Score=58.47 Aligned_cols=256 Identities=12% Similarity=0.124 Sum_probs=149.9
Q ss_pred HHcCCCHHHHHHHHHHHHHhhcCChHHHHHHHHcCChHHHHHhhccC--ChHHHHHHHHHHHHHhcCChhhHHHHHh-cC
Q 005044 257 MLRSEDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLSSC--CSESQREAALLLGQFAATDSDCKVHIVQ-RG 333 (717)
Q Consensus 257 ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~l~~L~~ll~~~--~~~~~~~a~~~L~~l~~~~~~~~~~l~~-~~ 333 (717)
+++.=++-.+..|++++.++....+.......+...-..+++++++. ...++...+.+++-+. .++.+.+.+-+ ..
T Consensus 157 l~Q~i~~lTrlfav~cl~~l~~~~e~R~i~waentcs~r~~e~l~n~vg~~qlQY~SL~~iw~lT-f~~~~aqdi~K~~d 235 (432)
T COG5231 157 LSQLIDFLTRLFAVSCLSNLEFDVEKRKIEWAENTCSRRFMEILQNYVGVKQLQYNSLIIIWILT-FSKECAQDIDKMDD 235 (432)
T ss_pred HHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHhhHHHHHHHHHHhhhhhhhhHHHHHHHHHHHh-cCHHHHHHHHHHHH
Confidence 33333455788899999998765333333333444556777777763 3578888888888885 44555433322 34
Q ss_pred ChHHHHHHhcC-CCHHHHHHHHHHHHHhhcCC-CC-chhhHhcCChHHHHHhhcC---CChhHHHHHHHHHHhccCCCcc
Q 005044 334 AVRPLIEMLQS-PDVQLREMSAFALGRLAQDM-HN-QAGIAHNGGLVPLLKLLDS---KNGSLQHNAAFALYGLADNEDN 407 (717)
Q Consensus 334 ~l~~L~~~l~~-~~~~v~~~a~~~L~~l~~~~-~~-~~~l~~~~~l~~L~~ll~~---~~~~v~~~a~~~L~~l~~~~~~ 407 (717)
.+..|+++.+. ....+-+-++..+.|++... .. -..+...|-+.+-++.|.. .+.+++...-.+=..|..+...
T Consensus 236 li~dli~iVk~~~keKV~Rlc~~Iv~n~~dK~pK~~I~~~lll~~~~k~vq~L~erkysDEel~~di~~i~s~l~~~~k~ 315 (432)
T COG5231 236 LINDLIAIVKERAKEKVLRLCCGIVANVLDKSPKGYIFSPLLLNDISKCVQVLLERKYSDEELVIDIERIRSRLVQNTKK 315 (432)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccchhhhhHhhcchHHHHHHHHhcCCChHHHHHHHHHHHHHHHhhhhh
Confidence 66777777765 35567778889999988722 21 2334444445555555533 3444443322222222211111
Q ss_pred hHHH------HHhcCccccccchhHHhhh-HHHHHHHHHHHHHHhhhchHHHHHHHHhhcchh-HHHHHHHHHHhccCC-
Q 005044 408 VADF------IRVGGVQKLQDGEFIVQAT-KDCVAKTLKRLEEKIHGRVLNHLLYLMRVAEKG-VQRRVALALAHLCSP- 478 (717)
Q Consensus 408 ~~~l------~~~~~i~~L~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~L~~ll~~~~~~-v~~~a~~aL~~l~~~- 478 (717)
...+ ...|.++- +.... .+-+...+..+ ..-...++..|.++++..++. .-..|+.-|+.+...
T Consensus 316 l~~fD~Y~~ELdsg~l~w------Sp~H~~~dFWs~N~d~l-~kdny~i~k~L~~~lq~n~~nt~i~vAc~Di~~~Vr~~ 388 (432)
T COG5231 316 LCIFDNYLNELDSGRLEW------SPYHHKKDFWSTNLDML-IKDNYEIVKVLKKYLQSNNPNTWICVACSDIFQLVRAS 388 (432)
T ss_pred hhHHHHHHHHHhhCcccC------CCcccccCchhhhHHHH-hhhhHHHHHHHHHHHhcCCCCceEeeeHhhHHHHHHhC
Confidence 1111 11121110 00111 11111122211 112345888999999998887 344577777777654
Q ss_pred CCCceeeecCCCHHHHHHHhcCCCchhhhhhHHHHHHhhhcc
Q 005044 479 DDQRTIFIDGGGLELLLGLLGSTNPKQQLDGAVALFKLANKA 520 (717)
Q Consensus 479 ~~~~~~~~~~~~l~~L~~ll~~~~~~v~~~a~~~l~~L~~~~ 520 (717)
++....+..-|+-..++.++++++++||..|..++..+....
T Consensus 389 PE~~~vl~Kyg~k~~im~L~nh~d~~VkfeAl~a~q~~i~~~ 430 (432)
T COG5231 389 PEINAVLSKYGVKEIIMNLINHDDDDVKFEALQALQTCISSE 430 (432)
T ss_pred chHHHHHHHhhhHHHHHHHhcCCCchhhHHHHHHHHHHHhhh
Confidence 556777778899999999999999999999999998887653
No 140
>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]
Probab=97.54 E-value=0.0046 Score=69.08 Aligned_cols=282 Identities=18% Similarity=0.066 Sum_probs=169.3
Q ss_pred HHHhHHHHHHHHhc--CChhhHHHHHhCCChHHHHHHHhccccCCCccchhHHHHHHHHHHHHHhh---cCchhhhHHHh
Q 005044 131 EVEKGSAFALGLLA--VKPEHQQLIVDNGALSHLVNLLKRHMDSNCSRAVNSVIRRAADAITNLAH---ENSSIKTRVRM 205 (717)
Q Consensus 131 ~v~~~a~~~L~~l~--~~~~~~~~~~~~~~i~~L~~lL~~~~~~~~~~~~~~~~~~a~~~L~~l~~---~~~~~~~~~~~ 205 (717)
+.+..|+..|..++ -+.+.+ -..++|.++.++.++.. .++..|+..|..+.. .-+.....+..
T Consensus 438 ~tK~~ALeLl~~lS~~i~de~~----LDRVlPY~v~l~~Ds~a--------~Vra~Al~Tlt~~L~~Vr~~~~~daniF~ 505 (1431)
T KOG1240|consen 438 QTKLAALELLQELSTYIDDEVK----LDRVLPYFVHLLMDSEA--------DVRATALETLTELLALVRDIPPSDANIFP 505 (1431)
T ss_pred hhHHHHHHHHHHHhhhcchHHH----HhhhHHHHHHHhcCchH--------HHHHHHHHHHHHHHhhccCCCcccchhhH
Confidence 77889999999999 333332 22468999999998876 889888888877663 22233334445
Q ss_pred cCCcHHHHHhhcC-CCHHHHHHHHHHHHHhhccChhhHHHHHhcCCHHHHHHHHcCCCHHHHHHHHHHHHHhhcCChHHH
Q 005044 206 EGGIPPLVELLEF-TDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSEDSAIHYEAVGVIGNLVHSSPNIK 284 (717)
Q Consensus 206 ~~~i~~L~~ll~~-~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~ 284 (717)
.-.+|.|-.++.+ ....+|..-+.+|..|+. ...+ +.+.+--......+++++.+ ..... ......
T Consensus 506 eYlfP~L~~l~~d~~~~~vRiayAsnla~LA~--tA~r--Fle~~q~~~~~g~~n~~nse-------t~~~~--~~~~~~ 572 (1431)
T KOG1240|consen 506 EYLFPHLNHLLNDSSAQIVRIAYASNLAQLAK--TAYR--FLELTQELRQAGMLNDPNSE-------TAPEQ--NYNTEL 572 (1431)
T ss_pred hhhhhhhHhhhccCccceehhhHHhhHHHHHH--HHHH--HHHHHHHHHhcccccCcccc-------ccccc--ccchHH
Confidence 5667888888877 455677777788888874 1111 11100000011123333322 00000 011111
Q ss_pred HHHHHcCChHHHHHhhccCChHHHHHHHHHHHHHhcCChhhHHHHHhcCChHHHHHHhcCCCHHHHHHHHHHHHHhhcCC
Q 005044 285 KEVLAAGALQPVIGLLSSCCSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQSPDVQLREMSAFALGRLAQDM 364 (717)
Q Consensus 285 ~~~~~~g~l~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~l~~~~~l~~L~~~l~~~~~~v~~~a~~~L~~l~~~~ 364 (717)
+.+ ..++-.....++.++.+-|++..+..|.-||.. +.+.=.+.-+++.|+..|.+.|+.+|.+-...+.-++..-
T Consensus 573 ~~L-~~~V~~~v~sLlsd~~~~Vkr~Lle~i~~LC~F---FGk~ksND~iLshLiTfLNDkDw~LR~aFfdsI~gvsi~V 648 (1431)
T KOG1240|consen 573 QAL-HHTVEQMVSSLLSDSPPIVKRALLESIIPLCVF---FGKEKSNDVILSHLITFLNDKDWRLRGAFFDSIVGVSIFV 648 (1431)
T ss_pred HHH-HHHHHHHHHHHHcCCchHHHHHHHHHHHHHHHH---hhhcccccchHHHHHHHhcCccHHHHHHHHhhccceEEEE
Confidence 111 123334556677777778888877788777732 1122223446789999999999999987666555554321
Q ss_pred CCchhhHhcCChHHHHHhhcCCChhHHHHHHHHHHhccCCCcchHHHHHhcCccccccchhHHhhhHHHHHHHHHHHHHH
Q 005044 365 HNQAGIAHNGGLVPLLKLLDSKNGSLQHNAAFALYGLADNEDNVADFIRVGGVQKLQDGEFIVQATKDCVAKTLKRLEEK 444 (717)
Q Consensus 365 ~~~~~l~~~~~l~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~l~~~~~i~~L~~~~~~~~~~~~~~~~~~~~l~~~ 444 (717)
...-++...+|.|.+-|.++.+.|...|+.++.-|+... .+++ .
T Consensus 649 --G~rs~seyllPLl~Q~ltD~EE~Viv~aL~~ls~Lik~~----------ll~K------------------------~ 692 (1431)
T KOG1240|consen 649 --GWRSVSEYLLPLLQQGLTDGEEAVIVSALGSLSILIKLG----------LLRK------------------------P 692 (1431)
T ss_pred --eeeeHHHHHHHHHHHhccCcchhhHHHHHHHHHHHHHhc----------ccch------------------------H
Confidence 122356667888889999999999999999988776432 1111 0
Q ss_pred hhhchHHHHHHHHhhcchhHHHHHHHHHHhccC
Q 005044 445 IHGRVLNHLLYLMRVAEKGVQRRVALALAHLCS 477 (717)
Q Consensus 445 ~~~~~~~~L~~ll~~~~~~v~~~a~~aL~~l~~ 477 (717)
.-.+++.....+|-.++.-||..++..|..++.
T Consensus 693 ~v~~i~~~v~PlL~hPN~WIR~~~~~iI~~~~~ 725 (1431)
T KOG1240|consen 693 AVKDILQDVLPLLCHPNLWIRRAVLGIIAAIAR 725 (1431)
T ss_pred HHHHHHHhhhhheeCchHHHHHHHHHHHHHHHh
Confidence 111244445566667777777777776666643
No 141
>KOG1943 consensus Beta-tubulin folding cofactor D [Posttranslational modification, protein turnover, chaperones]
Probab=97.51 E-value=0.021 Score=63.40 Aligned_cols=256 Identities=17% Similarity=0.187 Sum_probs=156.7
Q ss_pred CCHHHHHHHHcCCCHHHHHHHHHHHHHhhcCChHHHHHHHHcCChHHHHHhhccCC-hHHHHHHHHHHHHHhcCChhhHH
Q 005044 249 NALPTLILMLRSEDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLSSCC-SESQREAALLLGQFAATDSDCKV 327 (717)
Q Consensus 249 g~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~l~~L~~ll~~~~-~~~~~~a~~~L~~l~~~~~~~~~ 327 (717)
++++.|+..+++.+..|+..|+..++.++...+.. ....++...+.++.-.+ +....-++.+|+.++...--...
T Consensus 341 ~vie~Lls~l~d~dt~VrWSaAKg~grvt~rlp~~----Lad~vi~svid~~~p~e~~~aWHgacLaLAELA~rGlLlps 416 (1133)
T KOG1943|consen 341 FVIEHLLSALSDTDTVVRWSAAKGLGRVTSRLPPE----LADQVIGSVIDLFNPAEDDSAWHGACLALAELALRGLLLPS 416 (1133)
T ss_pred HHHHHHHHhccCCcchhhHHHHHHHHHHHccCcHH----HHHHHHHHHHHhcCcCCchhHHHHHHHHHHHHHhcCCcchH
Confidence 47788888899999999999999999998876622 11234555566554433 56777889999999753311111
Q ss_pred HHHhcCChHHHHHHhcC--------CCHHHHHHHHHHHHHhhcCCCCc--hhhHhcCChHHHHHhhcCCChhHHHHHHHH
Q 005044 328 HIVQRGAVRPLIEMLQS--------PDVQLREMSAFALGRLAQDMHNQ--AGIAHNGGLVPLLKLLDSKNGSLQHNAAFA 397 (717)
Q Consensus 328 ~l~~~~~l~~L~~~l~~--------~~~~v~~~a~~~L~~l~~~~~~~--~~l~~~~~l~~L~~ll~~~~~~v~~~a~~~ 397 (717)
.+ ..++|.++..+.- .-..+|.+||.+++.+++..... +.++..=.-..|...+-+.+..+|+.|..+
T Consensus 417 ~l--~dVvplI~kaL~Yd~~~G~~s~G~~VRDaAcY~~WAf~Rays~~~l~p~l~~L~s~LL~~AlFDrevncRRAAsAA 494 (1133)
T KOG1943|consen 417 LL--EDVVPLILKALHYDVRRGQHSVGQHVRDAACYVCWAFARAYSPSDLKPVLQSLASALLIVALFDREVNCRRAASAA 494 (1133)
T ss_pred HH--HHHHHHHHHHhhhhhhhcccccccchHHHHHHHHHHHHhcCChhhhhHHHHHHHHHHHHHHhcCchhhHhHHHHHH
Confidence 11 2356777766632 24579999999999999844332 222222222224555677888899999988
Q ss_pred HHhccCCCcchHHHHHhcCccccccch-hHHhhhHHHHHHHHHHHHHH--hhhchHHHHHHH-HhhcchhHHHHHHHHHH
Q 005044 398 LYGLADNEDNVADFIRVGGVQKLQDGE-FIVQATKDCVAKTLKRLEEK--IHGRVLNHLLYL-MRVAEKGVQRRVALALA 473 (717)
Q Consensus 398 L~~l~~~~~~~~~l~~~~~i~~L~~~~-~~~~~~~~~~~~~~~~l~~~--~~~~~~~~L~~l-l~~~~~~v~~~a~~aL~ 473 (717)
+.....-..+.+ .|++...... +......+|....+..+... ....++.+|+.. +.+-++.+|..++++|.
T Consensus 495 lqE~VGR~~n~p-----~Gi~Lis~~dy~sV~~rsNcy~~l~~~ia~~~~y~~~~f~~L~t~Kv~HWd~~irelaa~aL~ 569 (1133)
T KOG1943|consen 495 LQENVGRQGNFP-----HGISLISTIDYFSVTNRSNCYLDLCVSIAEFSGYREPVFNHLLTKKVCHWDVKIRELAAYALH 569 (1133)
T ss_pred HHHHhccCCCCC-----CchhhhhhcchhhhhhhhhHHHHHhHHHHhhhhHHHHHHHHHHhcccccccHHHHHHHHHHHH
Confidence 876643222210 1333332221 22333344555444444332 244455555544 55568999999999999
Q ss_pred hccCCCCCceeeecCCCHHHHHHHhcCCCchhhhhhHHHHHHhhh
Q 005044 474 HLCSPDDQRTIFIDGGGLELLLGLLGSTNPKQQLDGAVALFKLAN 518 (717)
Q Consensus 474 ~l~~~~~~~~~~~~~~~l~~L~~ll~~~~~~v~~~a~~~l~~L~~ 518 (717)
+++..... ....+.++.|+....+++...+.-+..+...+..
T Consensus 570 ~Ls~~~pk---~~a~~~L~~lld~~ls~~~~~r~g~~la~~ev~~ 611 (1133)
T KOG1943|consen 570 KLSLTEPK---YLADYVLPPLLDSTLSKDASMRHGVFLAAGEVIG 611 (1133)
T ss_pred HHHHhhHH---hhcccchhhhhhhhcCCChHHhhhhHHHHHHHHH
Confidence 98654321 1234678888888888888877655544444443
No 142
>PF12460 MMS19_C: RNAPII transcription regulator C-terminal; InterPro: IPR024687 This domain, approximately 60 amino acids in length, is found in the N-terminal region of MMS19 proteins. MMS19 is required for both nucleotide excision repair (NER) and RNA polymerase II (RNAP II) transcription [].
Probab=97.47 E-value=0.0082 Score=63.27 Aligned_cols=359 Identities=20% Similarity=0.170 Sum_probs=193.5
Q ss_pred hHHHHHhhcCCCCCccccCCCccchHHHhHHHHHHHHhcCChhhHHHHHhCCChHHHHHHHhccccCCCccchhHHHHHH
Q 005044 106 VPALVKHLQAPPTSEADRNLKPFEHEVEKGSAFALGLLAVKPEHQQLIVDNGALSHLVNLLKRHMDSNCSRAVNSVIRRA 185 (717)
Q Consensus 106 i~~L~~lL~~~~~~~~~~~~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~i~~L~~lL~~~~~~~~~~~~~~~~~~a 185 (717)
+|.|+..|.+.+.+.. .-...++.+|+.+|.++..-+.+.. ..+..+....+...+. +.....
T Consensus 1 ~p~ll~~Lpd~~~~~~---------~~~~~~L~~l~~ls~~~~i~~~~~~-~ll~kl~~~~~~~~~~-------~~~~~i 63 (415)
T PF12460_consen 1 LPALLALLPDSDSSTD---------SNYERILEALAALSTSPQILETLSI-RLLNKLSIVCQSESSS-------DYCHAI 63 (415)
T ss_pred CchHHhhCCCCCCcch---------hHHHHHHHHHHHHHCChhHHHHHHH-HHHHHHHHHhcCCCCh-------HHHHHH
Confidence 3677777776655211 5667899999999977776555443 3344444444332221 566667
Q ss_pred HHHHHHHhhcCchhh-----hHHHhcCCcHHHHHhhcC-----C--CHHHHHHHHHHHHHhhccCh-hhHHHHHhcCCHH
Q 005044 186 ADAITNLAHENSSIK-----TRVRMEGGIPPLVELLEF-----T--DTKVQRAAAGALRTLAFKND-ENKNQIVECNALP 252 (717)
Q Consensus 186 ~~~L~~l~~~~~~~~-----~~~~~~~~i~~L~~ll~~-----~--~~~v~~~a~~~L~~L~~~~~-~~~~~~~~~g~i~ 252 (717)
+.++.++........ ....+...++.+..+... . ++.+...+...+..+...-+ +.++.+. .
T Consensus 64 l~tl~~~~~~~~~~~~~~~~~~y~~~~lv~~l~~~~~~~~~~~~~~~~~~L~~~~~l~~~iv~~l~~~~q~~~~-----~ 138 (415)
T PF12460_consen 64 LSTLQSLLEKKQEDKQFEDNSWYFHRILVPRLFELALQASDQSSDLDDRVLELLSRLINLIVRSLSPEKQQEIL-----D 138 (415)
T ss_pred HHHHHHHHHhcccccccchHHHHHHhHHHHHHHHHHHhhcccccccchHHHHHHHHHHHHHHHhCCHHHHHHHH-----H
Confidence 777777765433322 223333467777766522 1 25566666666666654333 3333333 2
Q ss_pred HHHHHHc----------C------CCHHHHHHHHHHHHHhhcCChHHHHHHHHcCChHHHHHhhccC-ChHHHHHHHHHH
Q 005044 253 TLILMLR----------S------EDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLSSC-CSESQREAALLL 315 (717)
Q Consensus 253 ~L~~ll~----------~------~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~l~~L~~ll~~~-~~~~~~~a~~~L 315 (717)
.+..++. . .......-...++..+- ++..-. .....+..++.+..+. ++..+..++..+
T Consensus 139 ~~~~lf~~~~~~~~~~~~~~~~~~~~~~~~~l~~~il~~l~---~~~~~~-~~~~ll~~l~~~~~~~~~~~~~~~~~~~l 214 (415)
T PF12460_consen 139 ELYSLFLSPKSFSPFQPSSSTISEQQSRLVILFSAILCSLR---KDVSLP-DLEELLQSLLNLALSSEDEFSRLAALQLL 214 (415)
T ss_pred HHHHHHccccccCCCCccccccccccccHHHHHHHHHHcCC---cccCcc-CHHHHHHHHHHHHHcCCChHHHHHHHHHH
Confidence 3333332 1 11122222333444442 111100 1112566667665543 477788888888
Q ss_pred HHHhcCChhhHHHHHhcCChHHHHHHh-cCCCHH----HHHHHHHHHHHhhc-CCCCchhhHhcCChHHHHHhhcCCChh
Q 005044 316 GQFAATDSDCKVHIVQRGAVRPLIEML-QSPDVQ----LREMSAFALGRLAQ-DMHNQAGIAHNGGLVPLLKLLDSKNGS 389 (717)
Q Consensus 316 ~~l~~~~~~~~~~l~~~~~l~~L~~~l-~~~~~~----v~~~a~~~L~~l~~-~~~~~~~l~~~~~l~~L~~ll~~~~~~ 389 (717)
+.+.-..+... .. ..++..+.... ...++. ..+...|....|.. +++.. ...+..|++++.+ ++
T Consensus 215 a~LvNK~~~~~--~l-~~~l~~~~~~~~~~~~~~~~~~~~~~~~Wi~KaLv~R~~~~~-----~~~~~~L~~lL~~--~~ 284 (415)
T PF12460_consen 215 ASLVNKWPDDD--DL-DEFLDSLLQSISSSEDSELRPQALEILIWITKALVMRGHPLA-----TELLDKLLELLSS--PE 284 (415)
T ss_pred HHHHcCCCChh--hH-HHHHHHHHhhhcccCCcchhHHHHHHHHHHHHHHHHcCCchH-----HHHHHHHHHHhCC--hh
Confidence 87763211111 00 12233333333 222333 33344455555443 33221 1235557777766 66
Q ss_pred HHHHHHHHHHhccCCCcchHHHHHhcCccccccchhHHhhhHHHHHHHHHHHHHHhhhchHHHHHHHHhhcchhHHHHHH
Q 005044 390 LQHNAAFALYGLADNEDNVADFIRVGGVQKLQDGEFIVQATKDCVAKTLKRLEEKIHGRVLNHLLYLMRVAEKGVQRRVA 469 (717)
Q Consensus 390 v~~~a~~~L~~l~~~~~~~~~l~~~~~i~~L~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~L~~ll~~~~~~v~~~a~ 469 (717)
+...++.++.-+....+..-.-..+..+..|-+ ..+-..++|.|++..+..+.+.+...+
T Consensus 285 ~g~~aA~~f~il~~d~~~~l~~~~~a~vklLyk--------------------QR~F~~~~p~L~~~~~~~~~~~k~~yL 344 (415)
T PF12460_consen 285 LGQQAAKAFGILLSDSDDVLNKENHANVKLLYK--------------------QRFFTQVLPKLLEGFKEADDEIKSNYL 344 (415)
T ss_pred hHHHHHHHHhhHhcCcHHhcCccccchhhhHHh--------------------HHHHHHHHHHHHHHHhhcChhhHHHHH
Confidence 778888888888654221100000111111111 123445788888888888888899999
Q ss_pred HHHHhccCCCCCceeeec-CCCHHHHHHHhcCCCchhhhhhHHHHHHhhhcc
Q 005044 470 LALAHLCSPDDQRTIFID-GGGLELLLGLLGSTNPKQQLDGAVALFKLANKA 520 (717)
Q Consensus 470 ~aL~~l~~~~~~~~~~~~-~~~l~~L~~ll~~~~~~v~~~a~~~l~~L~~~~ 520 (717)
.+|.++..+-...-..-+ ...+|.|++-++.++++++..+..++..+..+.
T Consensus 345 ~ALs~ll~~vP~~vl~~~l~~LlPLLlqsL~~~~~~v~~s~L~tL~~~l~~~ 396 (415)
T PF12460_consen 345 TALSHLLKNVPKSVLLPELPTLLPLLLQSLSLPDADVLLSSLETLKMILEEA 396 (415)
T ss_pred HHHHHHHhhCCHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHcC
Confidence 999999876552221111 346788999999999999999999999988763
No 143
>COG5096 Vesicle coat complex, various subunits [Intracellular trafficking and secretion]
Probab=97.39 E-value=0.16 Score=55.83 Aligned_cols=160 Identities=9% Similarity=0.082 Sum_probs=116.7
Q ss_pred HHHhHHH-HHHHHhcCChhhHHHHHhCCChHHHHHHHhccccCCCccchhHHHHHHHHHHHHHhhcCchhhhHHHhcCCc
Q 005044 131 EVEKGSA-FALGLLAVKPEHQQLIVDNGALSHLVNLLKRHMDSNCSRAVNSVIRRAADAITNLAHENSSIKTRVRMEGGI 209 (717)
Q Consensus 131 ~v~~~a~-~~L~~l~~~~~~~~~~~~~~~i~~L~~lL~~~~~~~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i 209 (717)
..|..|+ ++++.+..+.+.. ..++.+++.....+. ++++..-.-|.+.+..+|.. .+. .+
T Consensus 34 ~~kidAmK~iIa~M~~G~dms------sLf~dViK~~~trd~--------ElKrL~ylYl~~yak~~P~~--~lL---av 94 (757)
T COG5096 34 YKKIDAMKKIIAQMSLGEDMS------SLFPDVIKNVATRDV--------ELKRLLYLYLERYAKLKPEL--ALL---AV 94 (757)
T ss_pred HHHHHHHHHHHHHHhcCCChH------HHHHHHHHHHHhcCH--------HHHHHHHHHHHHHhccCHHH--HHH---HH
Confidence 4444444 4555555444432 234556666664444 88888777777777766632 222 46
Q ss_pred HHHHHhhcCCCHHHHHHHHHHHHHhhccChhhHHHHHhcCCHHHHHHHHcCCCHHHHHHHHHHHHHhhcCChHHHHHHHH
Q 005044 210 PPLVELLEFTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSEDSAIHYEAVGVIGNLVHSSPNIKKEVLA 289 (717)
Q Consensus 210 ~~L~~ll~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~ 289 (717)
..+..=++++++.+|..|++++..+=. ++ +.. .+++.+.+++.++++.||..|+-++.++-.-+. ....+
T Consensus 95 Nti~kDl~d~N~~iR~~AlR~ls~l~~--~e----l~~-~~~~~ik~~l~d~~ayVRk~Aalav~kly~ld~---~l~~~ 164 (757)
T COG5096 95 NTIQKDLQDPNEEIRGFALRTLSLLRV--KE----LLG-NIIDPIKKLLTDPHAYVRKTAALAVAKLYRLDK---DLYHE 164 (757)
T ss_pred HHHHhhccCCCHHHHHHHHHHHHhcCh--HH----HHH-HHHHHHHHHccCCcHHHHHHHHHHHHHHHhcCH---hhhhc
Confidence 788888899999999999999887753 22 222 257889999999999999999999999965544 45566
Q ss_pred cCChHHHHHhhccCChHHHHHHHHHHHHHh
Q 005044 290 AGALQPVIGLLSSCCSESQREAALLLGQFA 319 (717)
Q Consensus 290 ~g~l~~L~~ll~~~~~~~~~~a~~~L~~l~ 319 (717)
.|.+..+..++.+.++.+...|..++..+.
T Consensus 165 ~g~~~~l~~l~~D~dP~Vi~nAl~sl~~i~ 194 (757)
T COG5096 165 LGLIDILKELVADSDPIVIANALASLAEID 194 (757)
T ss_pred ccHHHHHHHHhhCCCchHHHHHHHHHHHhc
Confidence 789999999999999999999999999885
No 144
>PF09759 Atx10homo_assoc: Spinocerebellar ataxia type 10 protein domain; InterPro: IPR019156 This is the conserved C-terminal 100 residues of Ataxin-10. Ataxin-10 belongs to the family of armadillo repeat proteins and in solution it tends to form homotrimeric complexes, which associate via a tip-to-tip association in a horseshoe-shaped contact with the concave sides of the molecules facing each other. This domain may represent the homo-association site since that is located near the C terminus of Ataxin-10. The protein does not contain a signal sequence for secretion or any subcellular compartment confirming its cytoplasmic localisation, specifically to the olivocerebellar region [].
Probab=97.39 E-value=0.0007 Score=53.84 Aligned_cols=68 Identities=16% Similarity=0.136 Sum_probs=58.5
Q ss_pred HHhHHHHHHHHhc-CChhhHHHHHhCCChHHHHHHHhccccCCCccchhHHHHHHHHHHHHHhhcCchhhhHHHh
Q 005044 132 VEKGSAFALGLLA-VKPEHQQLIVDNGALSHLVNLLKRHMDSNCSRAVNSVIRRAADAITNLAHENSSIKTRVRM 205 (717)
Q Consensus 132 v~~~a~~~L~~l~-~~~~~~~~~~~~~~i~~L~~lL~~~~~~~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~ 205 (717)
++...+++|+|++ .++.+++.+.+.|+++.+++...-++..+ -++++|++++.|||..+++++..+..
T Consensus 2 ~K~~lvrlianl~~~~~~~Qd~vr~~~Gi~liL~~c~iD~~nP------~irEwai~aiRnL~e~n~eNQ~~I~~ 70 (102)
T PF09759_consen 2 FKRDLVRLIANLCYKNKEVQDLVRELGGIPLILSCCNIDDHNP------FIREWAIFAIRNLCEGNPENQEFIAQ 70 (102)
T ss_pred cHHHHHHHHHHHHhCCHHHHHHHHHcCChHHHHHhcCCCcccH------HHHHHHHHHHHHHHhCCHHHHHHHHh
Confidence 4567889999999 99999999999999999999876544432 89999999999999999999877664
No 145
>KOG0567 consensus HEAT repeat-containing protein [General function prediction only]
Probab=97.37 E-value=0.026 Score=52.65 Aligned_cols=223 Identities=19% Similarity=0.223 Sum_probs=133.6
Q ss_pred HHHHHhhcCCCHHHHHHHHHHHHHhhccChhhHHHHHhcCCHHHHHHHHcCC--CHHHHHHHHHHHHHhhcCChHHHHHH
Q 005044 210 PPLVELLEFTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSE--DSAIHYEAVGVIGNLVHSSPNIKKEV 287 (717)
Q Consensus 210 ~~L~~ll~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~g~i~~L~~ll~~~--~~~v~~~a~~~L~~l~~~~~~~~~~~ 287 (717)
..+.+...+++.......+.+|..... ...++.|+..+.+. .+-||..|..+|+.+. . +
T Consensus 39 ~~i~ka~~d~s~llkhe~ay~LgQ~~~-----------~~Av~~l~~vl~desq~pmvRhEAaealga~~-~-~------ 99 (289)
T KOG0567|consen 39 KAITKAFIDDSALLKHELAYVLGQMQD-----------EDAVPVLVEVLLDESQEPMVRHEAAEALGAIG-D-P------ 99 (289)
T ss_pred HHHHHhcccchhhhccchhhhhhhhcc-----------chhhHHHHHHhcccccchHHHHHHHHHHHhhc-c-h------
Confidence 344444434444444455555555542 34678888877654 5677888888888874 2 2
Q ss_pred HHcCChHHHHHhhccCChHHHHHHHHHHHHHhcCChhhH----HHH--------HhcCChHHHHHHhcC-CCHH-HHHHH
Q 005044 288 LAAGALQPVIGLLSSCCSESQREAALLLGQFAATDSDCK----VHI--------VQRGAVRPLIEMLQS-PDVQ-LREMS 353 (717)
Q Consensus 288 ~~~g~l~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~----~~l--------~~~~~l~~L~~~l~~-~~~~-v~~~a 353 (717)
..++.+.+..+++...++..+..++..+-..+.-.. ... ...+-+..+-..+.+ ..+. -|..+
T Consensus 100 ---~~~~~l~k~~~dp~~~v~ETc~lAi~rle~~~~~~~~~~~~p~~SvdPa~p~~~ssv~~lr~~lld~t~~l~~Ry~a 176 (289)
T KOG0567|consen 100 ---ESLEILTKYIKDPCKEVRETCELAIKRLEWKDIIDKIANSSPYISVDPAPPANLSSVHELRAELLDETKPLFERYRA 176 (289)
T ss_pred ---hhHHHHHHHhcCCccccchHHHHHHHHHHHhhccccccccCccccCCCCCccccccHHHHHHHHHhcchhHHHHHhh
Confidence 235666677766667777776667766631110000 000 111223333333333 2222 23344
Q ss_pred HHHHHHhhcCCCCchhhHhcCChHHHHHhhcCCChhHHHHHHHHHHhccCCCcchHHHHHhcCccccccchhHHhhhHHH
Q 005044 354 AFALGRLAQDMHNQAGIAHNGGLVPLLKLLDSKNGSLQHNAAFALYGLADNEDNVADFIRVGGVQKLQDGEFIVQATKDC 433 (717)
Q Consensus 354 ~~~L~~l~~~~~~~~~l~~~~~l~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~l~~~~~i~~L~~~~~~~~~~~~~ 433 (717)
...|.|+... ..+..|.+=+..++.-.|..++.+++.|-...
T Consensus 177 mF~LRn~g~E----------eaI~al~~~l~~~SalfrhEvAfVfGQl~s~~---------------------------- 218 (289)
T KOG0567|consen 177 MFYLRNIGTE----------EAINALIDGLADDSALFRHEVAFVFGQLQSPA---------------------------- 218 (289)
T ss_pred hhHhhccCcH----------HHHHHHHHhcccchHHHHHHHHHHHhhccchh----------------------------
Confidence 4444444221 13555666666677778888888888774321
Q ss_pred HHHHHHHHHHHhhhchHHHHHHHHhh--cchhHHHHHHHHHHhccCCCCCceeeecCCCHHHHHHHhcCCCchhhhhhHH
Q 005044 434 VAKTLKRLEEKIHGRVLNHLLYLMRV--AEKGVQRRVALALAHLCSPDDQRTIFIDGGGLELLLGLLGSTNPKQQLDGAV 511 (717)
Q Consensus 434 ~~~~~~~l~~~~~~~~~~~L~~ll~~--~~~~v~~~a~~aL~~l~~~~~~~~~~~~~~~l~~L~~ll~~~~~~v~~~a~~ 511 (717)
.++.|.+.|.+ .+|.+|..|+.+|+.++.. ..++.|.+.+.+..+-+++.+..
T Consensus 219 ---------------ai~~L~k~L~d~~E~pMVRhEaAeALGaIa~e----------~~~~vL~e~~~D~~~vv~esc~v 273 (289)
T KOG0567|consen 219 ---------------AIPSLIKVLLDETEHPMVRHEAAEALGAIADE----------DCVEVLKEYLGDEERVVRESCEV 273 (289)
T ss_pred ---------------hhHHHHHHHHhhhcchHHHHHHHHHHHhhcCH----------HHHHHHHHHcCCcHHHHHHHHHH
Confidence 45667776665 4889999999999988643 67899999999999888888887
Q ss_pred HHHHhh
Q 005044 512 ALFKLA 517 (717)
Q Consensus 512 ~l~~L~ 517 (717)
+|--+-
T Consensus 274 aldm~e 279 (289)
T KOG0567|consen 274 ALDMLE 279 (289)
T ss_pred HHHHHH
Confidence 775544
No 146
>KOG1077 consensus Vesicle coat complex AP-2, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.35 E-value=0.052 Score=57.53 Aligned_cols=254 Identities=15% Similarity=0.155 Sum_probs=153.1
Q ss_pred hHHHhHHHHHHHHhcCChhhHHHHHhCCChHHHHHHHhccccCCCccchhHHHHHHHHHHHHHhhcCchhhhHHHhcCCc
Q 005044 130 HEVEKGSAFALGLLAVKPEHQQLIVDNGALSHLVNLLKRHMDSNCSRAVNSVIRRAADAITNLAHENSSIKTRVRMEGGI 209 (717)
Q Consensus 130 ~~v~~~a~~~L~~l~~~~~~~~~~~~~~~i~~L~~lL~~~~~~~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i 209 (717)
|.....|+.+++|+... ++++.+.. .+-++|.+.+... -++..++-+|..|...++.. +-..+..
T Consensus 125 ~~fv~LAL~~I~niG~r-e~~ea~~~-----DI~KlLvS~~~~~------~vkqkaALclL~L~r~spDl---~~~~~W~ 189 (938)
T KOG1077|consen 125 PTFVCLALHCIANIGSR-EMAEAFAD-----DIPKLLVSGSSMD------YVKQKAALCLLRLFRKSPDL---VNPGEWA 189 (938)
T ss_pred cHHHHHHHHHHHhhccH-hHHHHhhh-----hhHHHHhCCcchH------HHHHHHHHHHHHHHhcCccc---cChhhHH
Confidence 37788899999998732 34444332 2336665554321 68888888888888876653 2233567
Q ss_pred HHHHHhhcCCCHHHHHHHHHHHHHhhccChhhHHHHHhcCCHHHHHHHHc-------------CCCHHHHHHHHHHHHHh
Q 005044 210 PPLVELLEFTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLR-------------SEDSAIHYEAVGVIGNL 276 (717)
Q Consensus 210 ~~L~~ll~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~g~i~~L~~ll~-------------~~~~~v~~~a~~~L~~l 276 (717)
..++.+|.+.+..+..++...+..|+..+++....-.. -.+..|..... -+.|=.+...++.|.++
T Consensus 190 ~riv~LL~D~~~gv~ta~~sLi~~lvk~~p~~yk~~~~-~avs~L~riv~~~~t~~qdYTyy~vP~PWL~vKl~rlLq~~ 268 (938)
T KOG1077|consen 190 QRIVHLLDDQHMGVVTAATSLIEALVKKNPESYKTCLP-LAVSRLSRIVVVVGTSLQDYTYYFVPAPWLQVKLLRLLQIY 268 (938)
T ss_pred HHHHHHhCccccceeeehHHHHHHHHHcCCHHHhhhHH-HHHHHHHHHHhhcccchhhceeecCCChHHHHHHHHHHHhC
Confidence 89999999988888888888888888766654332211 11222332222 13455677777777776
Q ss_pred hcCC-hHHHHHHHHcCChHHHHHhhccC--ChHH-----HHHHHHHHHHHhcCChhhHHHHHhcCChHHHHHHhcCCCHH
Q 005044 277 VHSS-PNIKKEVLAAGALQPVIGLLSSC--CSES-----QREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQSPDVQ 348 (717)
Q Consensus 277 ~~~~-~~~~~~~~~~g~l~~L~~ll~~~--~~~~-----~~~a~~~L~~l~~~~~~~~~~l~~~~~l~~L~~~l~~~~~~ 348 (717)
-... +..+..+.+ .+..++...+.+ ...+ +...+.-.-+++.+-+.-...+. ..+..|.+++.+.+..
T Consensus 269 p~~~D~~~r~~l~e--vl~~iLnk~~~~~~~k~vq~~na~naVLFeaI~l~~h~D~e~~ll~--~~~~~Lg~fls~rE~N 344 (938)
T KOG1077|consen 269 PTPEDPSTRARLNE--VLERILNKAQEPPKSKKVQHSNAKNAVLFEAISLAIHLDSEPELLS--RAVNQLGQFLSHRETN 344 (938)
T ss_pred CCCCCchHHHHHHH--HHHHHHhccccCccccchHhhhhHHHHHHHHHHHHHHcCCcHHHHH--HHHHHHHHHhhccccc
Confidence 3221 112222211 233333333321 1112 22222333334333222222222 3567888999999999
Q ss_pred HHHHHHHHHHHhhcCCCCchhhHhcCChHHHHHhhc-CCChhHHHHHHHHHHhccCCC
Q 005044 349 LREMSAFALGRLAQDMHNQAGIAHNGGLVPLLKLLD-SKNGSLQHNAAFALYGLADNE 405 (717)
Q Consensus 349 v~~~a~~~L~~l~~~~~~~~~l~~~~~l~~L~~ll~-~~~~~v~~~a~~~L~~l~~~~ 405 (717)
+|.-|+..++.|+........+... ...++..|+ ..|..+++.|+..|..+|...
T Consensus 345 iRYLaLEsm~~L~ss~~s~davK~h--~d~Ii~sLkterDvSirrravDLLY~mcD~~ 400 (938)
T KOG1077|consen 345 IRYLALESMCKLASSEFSIDAVKKH--QDTIINSLKTERDVSIRRRAVDLLYAMCDVS 400 (938)
T ss_pred chhhhHHHHHHHHhccchHHHHHHH--HHHHHHHhccccchHHHHHHHHHHHHHhchh
Confidence 9999999999999874444444333 666778887 789999999999999998643
No 147
>COG5096 Vesicle coat complex, various subunits [Intracellular trafficking and secretion]
Probab=97.34 E-value=0.026 Score=61.84 Aligned_cols=161 Identities=17% Similarity=0.198 Sum_probs=122.9
Q ss_pred HHHHHHHHHHHHhhcCchhhhHHHhcCCcHHHHHhhcCCCHHHHHHHHHHHHHhhccChhhHHHHHhcCCHHHHHHHHcC
Q 005044 181 VIRRAADAITNLAHENSSIKTRVRMEGGIPPLVELLEFTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRS 260 (717)
Q Consensus 181 ~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~g~i~~L~~ll~~ 260 (717)
-+...=.++.++..+++ .. ...+.+++...+.|.++++..-..|.+.+..+|+. .+. +++.+.+=+.+
T Consensus 36 kidAmK~iIa~M~~G~d-ms------sLf~dViK~~~trd~ElKrL~ylYl~~yak~~P~~--~lL---avNti~kDl~d 103 (757)
T COG5096 36 KIDAMKKIIAQMSLGED-MS------SLFPDVIKNVATRDVELKRLLYLYLERYAKLKPEL--ALL---AVNTIQKDLQD 103 (757)
T ss_pred HHHHHHHHHHHHhcCCC-hH------HHHHHHHHHHHhcCHHHHHHHHHHHHHHhccCHHH--HHH---HHHHHHhhccC
Confidence 34444456677776444 22 13466777777889999999999999999866632 222 36778888999
Q ss_pred CCHHHHHHHHHHHHHhhcCChHHHHHHHHcCChHHHHHhhccCChHHHHHHHHHHHHHhcCChhhHHHHHhcCChHHHHH
Q 005044 261 EDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLSSCCSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIE 340 (717)
Q Consensus 261 ~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~l~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~l~~~~~l~~L~~ 340 (717)
+++.+|..|+++++.+ ..++.. ..+++++.+++.++++.||+.|+.++.++-.-+++ ...+.|.+..+..
T Consensus 104 ~N~~iR~~AlR~ls~l--~~~el~-----~~~~~~ik~~l~d~~ayVRk~Aalav~kly~ld~~---l~~~~g~~~~l~~ 173 (757)
T COG5096 104 PNEEIRGFALRTLSLL--RVKELL-----GNIIDPIKKLLTDPHAYVRKTAALAVAKLYRLDKD---LYHELGLIDILKE 173 (757)
T ss_pred CCHHHHHHHHHHHHhc--ChHHHH-----HHHHHHHHHHccCCcHHHHHHHHHHHHHHHhcCHh---hhhcccHHHHHHH
Confidence 9999999999999988 222221 23588999999999999999999999999754444 3556778888999
Q ss_pred HhcCCCHHHHHHHHHHHHHhhcC
Q 005044 341 MLQSPDVQLREMSAFALGRLAQD 363 (717)
Q Consensus 341 ~l~~~~~~v~~~a~~~L~~l~~~ 363 (717)
++.+.+|.+..+|+.+|..+...
T Consensus 174 l~~D~dP~Vi~nAl~sl~~i~~e 196 (757)
T COG5096 174 LVADSDPIVIANALASLAEIDPE 196 (757)
T ss_pred HhhCCCchHHHHHHHHHHHhchh
Confidence 99999999999999999888654
No 148
>PF02214 BTB_2: BTB/POZ domain; InterPro: IPR003131 Potassium channels are the most diverse group of the ion channel family [, ]. They are important in shaping the action potential, and in neuronal excitability and plasticity []. The potassium channel family is composed of several functionally distinct isoforms, which can be broadly separated into 2 groups []: the practically non-inactivating 'delayed' group and the rapidly inactivating 'transient' group. These are all highly similar proteins, with only small amino acid changes causing the diversity of the voltage-dependent gating mechanism, channel conductance and toxin binding properties. Each type of K+ channel is activated by different signals and conditions depending on their type of regulation: some open in response to depolarisation of the plasma membrane; others in response to hyperpolarisation or an increase in intracellular calcium concentration; some can be regulated by binding of a transmitter, together with intracellular kinases; while others are regulated by GTP-binding proteins or other second messengers []. In eukaryotic cells, K+ channels are involved in neural signalling and generation of the cardiac rhythm, act as effectors in signal transduction pathways involving G protein-coupled receptors (GPCRs) and may have a role in target cell lysis by cytotoxic T-lymphocytes []. In prokaryotic cells, they play a role in the maintenance of ionic homeostasis []. All K+ channels discovered so far possess a core of alpha subunits, each comprising either one or two copies of a highly conserved pore loop domain (P-domain). The P-domain contains the sequence (T/SxxTxGxG), which has been termed the K+ selectivity sequence. In families that contain one P-domain, four subunits assemble to form a selective pathway for K+ across the membrane. However, it remains unclear how the 2 P-domain subunits assemble to form a selective pore. The functional diversity of these families can arise through homo- or hetero-associations of alpha subunits or association with auxiliary cytoplasmic beta subunits. K+ channel subunits containing one pore domain can be assigned into one of two superfamilies: those that possess six transmembrane (TM) domains and those that possess only two TM domains. The six TM domain superfamily can be further subdivided into conserved gene families: the voltage-gated (Kv) channels; the KCNQ channels (originally known as KvLQT channels); the EAG-like K+ channels; and three types of calcium (Ca)-activated K+ channels (BK, IK and SK) []. The 2TM domain family comprises inward-rectifying K+ channels. In addition, there are K+ channel alpha-subunits that possess two P-domains. These are usually highly regulated K+ selective leak channels. The Kv family can be divided into several subfamilies on the basis of sequence similarity and function. Four of these subfamilies, Kv1 (Shaker), Kv2 (Shab), Kv3 (Shaw) and Kv4 (Shal), consist of pore-forming alpha subunits that associate with different types of beta subunit. Each alpha subunit comprises six hydrophobic TM domains with a P-domain between the fifth and sixth, which partially resides in the membrane. The fourth TM domain has positively charged residues at every third residue and acts as a voltage sensor, which triggers the conformational change that opens the channel pore in response to a displacement in membrane potential []. More recently, 4 new electrically-silent alpha subunits have been cloned: Kv5 (KCNF), Kv6 (KCNG), Kv8 and Kv9 (KCNS). These subunits do not themselves possess any functional activity, but appear to form heteromeric channels with Kv2 subunits, and thus modulate Shab channel activity []. When highly expressed, they inhibit channel activity, but at lower levels show more specific modulatory actions. The N-terminal, cytoplasmic tetramerization domain (T1) of voltage-gated potassium channels encodes molecular determinants for subfamily-specific assembly of alpha-subunits into functional tetrameric channels []. This domain is found in a subset of a larger group of proteins that contain the BTB/POZ domain.; GO: 0005249 voltage-gated potassium channel activity, 0006813 potassium ion transport, 0008076 voltage-gated potassium channel complex, 0016020 membrane; PDB: 1NN7_A 3KVT_A 1EXB_E 1QDV_A 1DSX_E 1QDW_F 3LUT_B 3LNM_B 2A79_B 3DRY_C ....
Probab=97.33 E-value=0.00026 Score=56.95 Aligned_cols=87 Identities=25% Similarity=0.380 Sum_probs=65.7
Q ss_pred EEEEEcCeEeehhHHHHh-hccHHHHHhhcCC---CCCCCCcceEcCCCCHHHHHHHHHHHhc-Cccccc-hhhHHHHHH
Q 005044 552 VTFLVEGRRFYAHRICLL-ASSDAFRAMFDGG---YREKDARDIEIPNIRWEVFELMMRFIYT-GSVDVT-LDIAQDLLR 625 (717)
Q Consensus 552 v~~~~~~~~~~~h~~il~-~~s~~f~~~~~~~---~~e~~~~~i~l~~~~~~~~~~~l~~~Yt-~~~~~~-~~~~~~ll~ 625 (717)
|.+.|+|..|.+-+..|. ....+|..++.++ .....+..+.+ |=+|..|+.+|+|+-+ +.+..+ ......++.
T Consensus 1 V~lNVGG~~f~~~~~tL~~~~~s~l~~~~~~~~~~~~~~~~~~~fi-DRdp~~F~~IL~ylr~~~~l~~~~~~~~~~l~~ 79 (94)
T PF02214_consen 1 VRLNVGGTIFETSRSTLTRYPDSLLARLFSGERSDDYDDDDGEYFI-DRDPELFEYILNYLRTGGKLPIPDEICLEELLE 79 (94)
T ss_dssp EEEEETTEEEEEEHHHHHTSTTSTTTSHHHTGHGGGEETTTTEEEE-SS-HHHHHHHHHHHHHTSSB---TTS-HHHHHH
T ss_pred CEEEECCEEEEEcHHHHhhCCCChhhhHHhhccccccCCccceEEe-ccChhhhhHHHHHHhhcCccCCCCchhHHHHHH
Confidence 578899999999999998 4456899999864 33344556666 6799999999999999 666654 556889999
Q ss_pred HHHhhChHhH-HHHH
Q 005044 626 AADQYLLEGL-KRLC 639 (717)
Q Consensus 626 ~A~~~~~~~l-~~~c 639 (717)
-|.+|+++.+ ++.|
T Consensus 80 Ea~fy~l~~l~i~~c 94 (94)
T PF02214_consen 80 EAEFYGLDELFIEDC 94 (94)
T ss_dssp HHHHHT-HHHHBHHC
T ss_pred HHHHcCCCccccCCC
Confidence 9999999998 6665
No 149
>PF13513 HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O_A 2H4M_A 2QMR_A 1QBK_B 2Z5M_A 2Z5K_A 2Z5N_A 1GCJ_B ....
Probab=97.30 E-value=0.00055 Score=48.52 Aligned_cols=55 Identities=36% Similarity=0.422 Sum_probs=45.5
Q ss_pred HHHHHHHHHHHHHhhccChhhHHHHHhcCCHHHHHHHHcCCCHHHHHHHHHHHHHh
Q 005044 221 TKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSEDSAIHYEAVGVIGNL 276 (717)
Q Consensus 221 ~~v~~~a~~~L~~L~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~v~~~a~~~L~~l 276 (717)
|.+|..|+++|.+++...+....... ..+++.|+.+|+++++.||..|+++|++|
T Consensus 1 p~vR~~A~~aLg~l~~~~~~~~~~~~-~~~~~~L~~~L~d~~~~VR~~A~~aLg~l 55 (55)
T PF13513_consen 1 PRVRRAAAWALGRLAEGCPELLQPYL-PELLPALIPLLQDDDDSVRAAAAWALGNL 55 (55)
T ss_dssp HHHHHHHHHHHHCTTTTTHHHHHHHH-HHHHHHHHHHTTSSSHHHHHHHHHHHHCH
T ss_pred CHHHHHHHHHHhhHhcccHHHHHHHH-HHHHHHHHHHHcCCCHHHHHHHHHHHhcC
Confidence 57899999999998875555544433 45899999999999999999999999875
No 150
>KOG3036 consensus Protein involved in cell differentiation/sexual development [General function prediction only]
Probab=97.29 E-value=0.041 Score=50.66 Aligned_cols=181 Identities=12% Similarity=0.117 Sum_probs=126.4
Q ss_pred HHHHHHHHHHhhcChhhHHHHHhCCChHHHHHhhcCCCCCccccCCCccchHHHhHHHHHHHHhc--CChhhHHHHHhCC
Q 005044 80 AKRATHVLAELAKNEEVVNWIVEGGAVPALVKHLQAPPTSEADRNLKPFEHEVEKGSAFALGLLA--VKPEHQQLIVDNG 157 (717)
Q Consensus 80 ~~~a~~~L~~l~~~~~~~~~~~~~g~i~~L~~lL~~~~~~~~~~~~~~~~~~v~~~a~~~L~~l~--~~~~~~~~~~~~~ 157 (717)
...|+..|..++++|+.+..+.++..--.|-.+|...+.+++ .+-+|..++.+++.+. ++.+.-..+...+
T Consensus 96 VcnaL~LlQcvASHpdTr~~FL~A~iPlylYpfL~Tt~~~r~-------fEyLRLtsLGVIgaLvk~dd~eVi~fLl~Te 168 (293)
T KOG3036|consen 96 VCNALALLQCVASHPDTRRAFLRAHIPLYLYPFLNTTSKSRP-------FEYLRLTSLGVIGALVKNDDQEVIRFLLTTE 168 (293)
T ss_pred HHHHHHHHHHHhcCcchHHHHHHccChhhhHHhhhccccCCc-------hHHHhHHHHHHHHHHHhcCcHHHHHHHHHhh
Confidence 678888888899999999999999988889999987765322 2378999999999999 7778888888999
Q ss_pred ChHHHHHHHhccccCCCccchhHHHHHHHHHHHHHhhcCchhhh------HHHhc-CCcH-HHHHhhcCCCHHHHHHHHH
Q 005044 158 ALSHLVNLLKRHMDSNCSRAVNSVIRRAADAITNLAHENSSIKT------RVRME-GGIP-PLVELLEFTDTKVQRAAAG 229 (717)
Q Consensus 158 ~i~~L~~lL~~~~~~~~~~~~~~~~~~a~~~L~~l~~~~~~~~~------~~~~~-~~i~-~L~~ll~~~~~~v~~~a~~ 229 (717)
++|..++.+..... ..+..|..++..+..++..... .|..- ..+. .+.++.+.+++.+...+.+
T Consensus 169 IVPlCLrime~GSe--------lSKtvA~fIlqKIlldD~GL~YiCqt~eRF~av~~~L~kmv~~l~~~ps~RllKhviR 240 (293)
T KOG3036|consen 169 IVPLCLRIMESGSE--------LSKTVATFILQKILLDDVGLYYICQTAERFSAVALVLGKMVFQLVSMPSPRLLKHVIR 240 (293)
T ss_pred hHHHHHHHHhcccH--------HHHHHHHHHHHHHhhccccHHHHHHhHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHH
Confidence 99999999988765 6777888888887765544322 11111 1222 2334556688999999999
Q ss_pred HHHHhhccChhhHHHHHhc---CCHH-HHHHHHcCCCHHHHHHHHHHHHHhh
Q 005044 230 ALRTLAFKNDENKNQIVEC---NALP-TLILMLRSEDSAIHYEAVGVIGNLV 277 (717)
Q Consensus 230 ~L~~L~~~~~~~~~~~~~~---g~i~-~L~~ll~~~~~~v~~~a~~~L~~l~ 277 (717)
+..+|+. ++..+..+... +.-. .+..++ .+|++.+..-...+.+++
T Consensus 241 cYlrLsd-nprar~aL~~clPd~Lrd~tfs~~l-~~D~~~k~~l~~ll~~l~ 290 (293)
T KOG3036|consen 241 CYLRLSD-NPRARAALRSCLPDQLRDGTFSLLL-KDDPETKQWLQQLLKNLC 290 (293)
T ss_pred HHHHhcC-CHHHHHHHHhhCcchhccchHHHHH-hcChhHHHHHHHHHHHhc
Confidence 9999995 66666555431 1111 111222 235555555555555553
No 151
>PF13513 HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O_A 2H4M_A 2QMR_A 1QBK_B 2Z5M_A 2Z5K_A 2Z5N_A 1GCJ_B ....
Probab=97.25 E-value=0.00053 Score=48.58 Aligned_cols=55 Identities=31% Similarity=0.381 Sum_probs=45.6
Q ss_pred hHHHHHHHHHHHHHhcCChhhHHHHHhcCChHHHHHHhcCCCHHHHHHHHHHHHHh
Q 005044 305 SESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQSPDVQLREMSAFALGRL 360 (717)
Q Consensus 305 ~~~~~~a~~~L~~l~~~~~~~~~~l~~~~~l~~L~~~l~~~~~~v~~~a~~~L~~l 360 (717)
+.+|..|+++|++++...+..... ....+++.|+.+|+++++.||..|+++|++|
T Consensus 1 p~vR~~A~~aLg~l~~~~~~~~~~-~~~~~~~~L~~~L~d~~~~VR~~A~~aLg~l 55 (55)
T PF13513_consen 1 PRVRRAAAWALGRLAEGCPELLQP-YLPELLPALIPLLQDDDDSVRAAAAWALGNL 55 (55)
T ss_dssp HHHHHHHHHHHHCTTTTTHHHHHH-HHHHHHHHHHHHTTSSSHHHHHHHHHHHHCH
T ss_pred CHHHHHHHHHHhhHhcccHHHHHH-HHHHHHHHHHHHHcCCCHHHHHHHHHHHhcC
Confidence 568999999999987655555443 4466899999999999999999999999876
No 152
>PF08569 Mo25: Mo25-like; InterPro: IPR013878 Mo25-like proteins are involved in both polarised growth and cytokinesis. In fission yeast Mo25 is localised alternately to the spindle pole body and to the site of cell division in a cell cycle dependent manner [, ]. ; PDB: 2WTK_A 1UPK_A 3GNI_A 1UPL_A.
Probab=97.23 E-value=0.046 Score=54.80 Aligned_cols=262 Identities=14% Similarity=0.134 Sum_probs=170.2
Q ss_pred HHHhHHHHHHHHhc-CChhhHHHHHhC--CChHHHHHHHhccccCCCccchhHHHHHHHHHHHHHhhcCchhhhHHHhcC
Q 005044 131 EVEKGSAFALGLLA-VKPEHQQLIVDN--GALSHLVNLLKRHMDSNCSRAVNSVIRRAADAITNLAHENSSIKTRVRMEG 207 (717)
Q Consensus 131 ~v~~~a~~~L~~l~-~~~~~~~~~~~~--~~i~~L~~lL~~~~~~~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~ 207 (717)
++...+...|..+. .....++...+. ..+..+-..|-+.... +..... +..++. .+...+
T Consensus 14 ElVr~l~e~L~~L~~~~~~~~~k~~eeisK~L~~mK~IL~G~~e~-------ep~~e~---v~qLa~-------Ei~~~d 76 (335)
T PF08569_consen 14 ELVRSLREALEKLDSKSDKKREKAQEEISKYLQQMKEILYGDGEP-------EPNPEQ---VAQLAQ-------EIYRSD 76 (335)
T ss_dssp HHHHHHHHHHHHHHSS-HHHHHHHHHHHHHHHHHHHHHHHS-SS-----------HHH---HHHHHH-------HHHHHT
T ss_pred HHHHHHHHHHHHhccccCcchhhHHHHHHHHHHHHHHHhcCCCCC-------CCCHHH---HHHHHH-------HHHHhC
Confidence 77778888888883 222222222211 1244455555544332 111112 222221 345567
Q ss_pred CcHHHHHhhcCCCHHHHHHHHHHHHHhhccChhhHH-----HHHh--cCCHHHHHHHHcCCCHHHHHHHHHHHHHhhcCC
Q 005044 208 GIPPLVELLEFTDTKVQRAAAGALRTLAFKNDENKN-----QIVE--CNALPTLILMLRSEDSAIHYEAVGVIGNLVHSS 280 (717)
Q Consensus 208 ~i~~L~~ll~~~~~~v~~~a~~~L~~L~~~~~~~~~-----~~~~--~g~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~ 280 (717)
.+..|+..|..-+-+.+..+..+..++.......+. .+.. ..++..|+..- +++++...+...|..++..
T Consensus 77 ll~~Li~~L~~L~fEsrKdv~~if~~llr~~~~~~~~p~v~yl~~~~peil~~L~~gy--~~~dial~~g~mlRec~k~- 153 (335)
T PF08569_consen 77 LLYLLIRNLPKLDFESRKDVAQIFSNLLRRQIGSRSPPTVDYLERHRPEILDILLRGY--ENPDIALNCGDMLRECIKH- 153 (335)
T ss_dssp HHHHHHHTGGGS-HHHHHHHHHHHHHHHT--BTTB--HHHHHHHT--THHHHHHHHGG--GSTTTHHHHHHHHHHHTTS-
T ss_pred HHHHHHHHhhhCCCcccccHHHHHHHHHhhccCCCCCchHHHHHhCCHHHHHHHHHHh--cCccccchHHHHHHHHHhh-
Confidence 788899999888999999999999999875433321 2222 12333333333 3566777788888887654
Q ss_pred hHHHHHHHHcCChHHHHHhhccCChHHHHHHHHHHHHHhcCChhhHHHHHhc---CChHHHHHHhcCCCHHHHHHHHHHH
Q 005044 281 PNIKKEVLAAGALQPVIGLLSSCCSESQREAALLLGQFAATDSDCKVHIVQR---GAVRPLIEMLQSPDVQLREMSAFAL 357 (717)
Q Consensus 281 ~~~~~~~~~~g~l~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~l~~~---~~l~~L~~~l~~~~~~v~~~a~~~L 357 (717)
+...+.+.....+..+.+.+..++-++...|..++..+-..........+.. .++...-.++.+++.-++..++..|
T Consensus 154 e~l~~~iL~~~~f~~ff~~~~~~~Fdiasdaf~t~~~llt~hk~~~a~fl~~n~d~ff~~~~~Ll~s~NYvtkrqslkLL 233 (335)
T PF08569_consen 154 ESLAKIILYSECFWKFFKYVQLPNFDIASDAFSTFKELLTRHKKLVAEFLSNNYDRFFQKYNKLLESSNYVTKRQSLKLL 233 (335)
T ss_dssp HHHHHHHHTSGGGGGHHHHTTSSSHHHHHHHHHHHHHHHHSSHHHHHHHHHHTHHHHHHHHHHHCT-SSHHHHHHHHHHH
T ss_pred HHHHHHHhCcHHHHHHHHHhcCCccHhHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHccCCCeEeehhhHHHH
Confidence 6666788888888889999999999999999999998766555555555543 4567788889999999999999999
Q ss_pred HHhhcCCCCchh----hHhcCChHHHHHhhcCCChhHHHHHHHHHHhccCCCcchHHHH
Q 005044 358 GRLAQDMHNQAG----IAHNGGLVPLLKLLDSKNGSLQHNAAFALYGLADNEDNVADFI 412 (717)
Q Consensus 358 ~~l~~~~~~~~~----l~~~~~l~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~l~ 412 (717)
+.|..+..+... +.+..-+..++.+|.+.+..+|..|..+..-...++...+.+.
T Consensus 234 ~ellldr~n~~vm~~yi~~~~nLkl~M~lL~d~sk~Iq~eAFhvFKvFVANp~K~~~I~ 292 (335)
T PF08569_consen 234 GELLLDRSNFNVMTRYISSPENLKLMMNLLRDKSKNIQFEAFHVFKVFVANPNKPPPIV 292 (335)
T ss_dssp HHHHHSGGGHHHHHHHTT-HHHHHHHHHHTT-S-HHHHHHHHHHHHHHHH-SS-BHHHH
T ss_pred HHHHHchhHHHHHHHHHCCHHHHHHHHHHhcCcchhhhHHHHHHHHHHHhCCCCChHHH
Confidence 999988877543 3344567788999999999999999999998877765544433
No 153
>smart00875 BACK BTB And C-terminal Kelch. The BACK domain is found juxtaposed to the BTB domain; they are separated by as little as two residues.
Probab=97.16 E-value=0.00057 Score=55.95 Aligned_cols=49 Identities=10% Similarity=0.190 Sum_probs=43.1
Q ss_pred HHHHHHHHHHcCcHHHHHHHHHHHHHhHHHhcCCchhhhchhhcHHHHH
Q 005044 652 VSSMYELSEAFHAISLRHTCILYIMEHFDKLSTRPGHSNLIQRIIPEIH 700 (717)
Q Consensus 652 ~~~~~~~a~~~~~~~L~~~~~~~i~~~~~~~~~~~~f~~l~~~~~~~l~ 700 (717)
|+.++.+|+.|+.+.|.+.|.+||.+||..+.++++|.+||.+.+..++
T Consensus 1 c~~i~~~a~~~~~~~L~~~~~~~i~~nf~~~~~~~~f~~L~~~~l~~iL 49 (101)
T smart00875 1 CLGIRRFAELYGLEELLEKALRFILKNFLEVAQSEEFLELSLEQLLSLL 49 (101)
T ss_pred CHhHHHHHHHhChHHHHHHHHHHHHHHHHHHhcCcHHhcCCHHHHHHHh
Confidence 5678999999999999999999999999999999999999766555443
No 154
>KOG4151 consensus Myosin assembly protein/sexual cycle protein and related proteins [Posttranslational modification, protein turnover, chaperones; Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=97.12 E-value=0.017 Score=62.38 Aligned_cols=241 Identities=17% Similarity=0.114 Sum_probs=164.9
Q ss_pred ChhhHHHHHhCCChHHHHHhhcCCCCCccccCCCccchHHHhHHHHHHH-Hhc-CChhhHHHHHhCCChHHHHHHHhccc
Q 005044 93 NEEVVNWIVEGGAVPALVKHLQAPPTSEADRNLKPFEHEVEKGSAFALG-LLA-VKPEHQQLIVDNGALSHLVNLLKRHM 170 (717)
Q Consensus 93 ~~~~~~~~~~~g~i~~L~~lL~~~~~~~~~~~~~~~~~~v~~~a~~~L~-~l~-~~~~~~~~~~~~~~i~~L~~lL~~~~ 170 (717)
...-+...++.|+...|+.+.....+ .-+.....+|. .+. .+... ...++.+.+.+....
T Consensus 493 ~K~~~~~~Ik~~~~~aLlrl~~~q~e------------~akl~~~~aL~~~i~f~~~~~------~~v~~~~~s~~~~d~ 554 (748)
T KOG4151|consen 493 EKYERAKKIKPGGYEALLRLGQQQFE------------EAKLKWYHALAGKIDFPGERS------YEVVKPLDSALHNDE 554 (748)
T ss_pred hHHhcCccccccHHHHHHHHHHHhch------------HHHHHHHHHHhhhcCCCCCch------hhhhhhhcchhhhhH
Confidence 45556677889999999999988776 67777777777 333 11111 133555555554432
Q ss_pred cCCCccchhHHHHHHHHHHHHHhhcCchhhhHHHhcCCcHHHHHhhcCCCHHHHHHHHHHHHHhhccChhhHHHHHh-cC
Q 005044 171 DSNCSRAVNSVIRRAADAITNLAHENSSIKTRVRMEGGIPPLVELLEFTDTKVQRAAAGALRTLAFKNDENKNQIVE-CN 249 (717)
Q Consensus 171 ~~~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~-~g 249 (717)
.. --...++..+.||+..++..++.+.+.-+++.+-.++...++..+..++..+.||..+..-....+.+ ..
T Consensus 555 ~~-------~en~E~L~altnLas~s~s~r~~i~ke~~~~~ie~~~~ee~~~lqraa~e~~~NLl~~~~~~e~si~e~~~ 627 (748)
T KOG4151|consen 555 KG-------LENFEALEALTNLASISESDRQKILKEKALGKIEELMTEENPALQRAALESIINLLWSPLLYERSIVEYKD 627 (748)
T ss_pred HH-------HHHHHHHHHhhcccCcchhhHHHHHHHhcchhhHHHhhcccHHHHHHHHHHHHHHHhhHHHHHHHhhcccc
Confidence 21 11234778899999988888888888888888777888899999999999999999855555555555 34
Q ss_pred CHHHHHHHHcCCCHHHHHHHHHHHHHhhcCChHHHH-HHHHcCChHHHHHhhccCChHHHHHHHHHHHHHhcCChhhHHH
Q 005044 250 ALPTLILMLRSEDSAIHYEAVGVIGNLVHSSPNIKK-EVLAAGALQPVIGLLSSCCSESQREAALLLGQFAATDSDCKVH 328 (717)
Q Consensus 250 ~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~-~~~~~g~l~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~ 328 (717)
.++.....+...+......+++++..++.....++. ..........+..++.+.+..+++..+..+.|+.....+....
T Consensus 628 ~l~~w~~~~e~~~E~~~lA~a~a~a~I~sv~~n~c~~~~~~~~~~e~~~~~i~~~~~~~qhrgl~~~ln~~~~~~ei~~~ 707 (748)
T KOG4151|consen 628 RLKLWNLNLEVADEKFELAGAGALAAITSVVENHCSRILELLEWLEILVRAIQDEDDEIQHRGLVIILNLFEALFEIAEK 707 (748)
T ss_pred CchHHHHHHHhhhhHHhhhccccccchhhcchhhhhhHHHhhcchHHHHHhhcCchhhhhhhhhhhhhhHHHHHHHHHHH
Confidence 556666666666777788888888767665565555 3334567888999999999999999999888876555555556
Q ss_pred HHhcCChHHHHHHhcCCCHHHHHHHHHHHH
Q 005044 329 IVQRGAVRPLIEMLQSPDVQLREMSAFALG 358 (717)
Q Consensus 329 l~~~~~l~~L~~~l~~~~~~v~~~a~~~L~ 358 (717)
+.....++.+..+-.-.....++.+..+|.
T Consensus 708 ~~~~~~~~~l~~~~~~~~a~~~~~~~~~l~ 737 (748)
T KOG4151|consen 708 IFETEVMELLSGLQKLNRAPKREDAAPCLS 737 (748)
T ss_pred hccchHHHHHHHHHHhhhhhhhhhhhhHHH
Confidence 666666666655544333344444444443
No 155
>PF11841 DUF3361: Domain of unknown function (DUF3361)
Probab=97.04 E-value=0.014 Score=50.62 Aligned_cols=133 Identities=13% Similarity=0.205 Sum_probs=101.0
Q ss_pred HHHHHhCCChHHHHHhhcCCCCCccccCCCccchHHHhHHHHHHHHhcCChhhHHHHHhCCChHHHHHHHhccccCCCcc
Q 005044 97 VNWIVEGGAVPALVKHLQAPPTSEADRNLKPFEHEVEKGSAFALGLLAVKPEHQQLIVDNGALSHLVNLLKRHMDSNCSR 176 (717)
Q Consensus 97 ~~~~~~~g~i~~L~~lL~~~~~~~~~~~~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~i~~L~~lL~~~~~~~~~~ 176 (717)
...++..||++.|+++++++.. .++....+...++.++..|.+..-.........++..++.++.....+.
T Consensus 4 A~EFI~~~Gl~~L~~~iE~g~~------~~~~~~~~La~~L~af~eLMeHg~vsWd~l~~~FI~Kia~~Vn~~~~d~--- 74 (160)
T PF11841_consen 4 AQEFISRDGLTLLIKMIEEGTE------IQPCKGEILAYALTAFVELMEHGIVSWDTLSDSFIKKIASYVNSSAMDA--- 74 (160)
T ss_pred HHHHHhccCHHHHHHHHHcCCc------cCcchHHHHHHHHHHHHHHHhcCcCchhhccHHHHHHHHHHHccccccc---
Confidence 4567888999999999998764 1122237778899999998855444445666677888999988655322
Q ss_pred chhHHHHHHHHHHHHHhhcCchhhhHHHhcCCcHHHHHhhcCCCHHHHHHHHHHHHHhhccChhh
Q 005044 177 AVNSVIRRAADAITNLAHENSSIKTRVRMEGGIPPLVELLEFTDTKVQRAAAGALRTLAFKNDEN 241 (717)
Q Consensus 177 ~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~L~~~~~~~ 241 (717)
.+...++.+|-++...++.....+.+.--++.|+..|+.++++++..+...+..|-.+.++.
T Consensus 75 ---~i~q~sLaILEs~Vl~S~~ly~~V~~evt~~~Li~hLq~~~~~iq~naiaLinAL~~kA~~~ 136 (160)
T PF11841_consen 75 ---SILQRSLAILESIVLNSPKLYQLVEQEVTLESLIRHLQVSNQEIQTNAIALINALFLKADDS 136 (160)
T ss_pred ---hHHHHHHHHHHHHHhCCHHHHHHHhccCCHHHHHHHHHcCCHHHHHHHHHHHHHHHhcCChH
Confidence 89999999999999977766666666566899999999999999999998888886644443
No 156
>smart00185 ARM Armadillo/beta-catenin-like repeats. Approx. 40 amino acid repeat. Tandem repeats form superhelix of helices that is proposed to mediate interaction of beta-catenin with its ligands. Involved in transducing the Wingless/Wnt signal. In plakoglobin arm repeats bind alpha-catenin and N-cadherin.
Probab=97.04 E-value=0.0019 Score=42.39 Aligned_cols=39 Identities=38% Similarity=0.609 Sum_probs=35.6
Q ss_pred hhhHHHHHhcCCHHHHHHHHcCCCHHHHHHHHHHHHHhh
Q 005044 239 DENKNQIVECNALPTLILMLRSEDSAIHYEAVGVIGNLV 277 (717)
Q Consensus 239 ~~~~~~~~~~g~i~~L~~ll~~~~~~v~~~a~~~L~~l~ 277 (717)
++++..+.+.|+++.|++++.+++++++..++++|+|++
T Consensus 2 ~~~~~~i~~~g~i~~L~~ll~~~~~~i~~~a~~aL~nl~ 40 (41)
T smart00185 2 DEQKQAVVDAGGLPALVELLKSEDEEVVKEAAWALSNLS 40 (41)
T ss_pred cHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHc
Confidence 346778889999999999999999999999999999986
No 157
>KOG1987 consensus Speckle-type POZ protein SPOP and related proteins with TRAF, MATH and BTB/POZ domains [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=97.03 E-value=0.00041 Score=69.80 Aligned_cols=131 Identities=21% Similarity=0.190 Sum_probs=110.2
Q ss_pred CeEeehhHHHHhhccHHHHHhhcCCCCCCCCcceEcCCCCHHHHHHHHHHHhcCccccchhhHH---HHHHHHHhhChHh
Q 005044 558 GRRFYAHRICLLASSDAFRAMFDGGYREKDARDIEIPNIRWEVFELMMRFIYTGSVDVTLDIAQ---DLLRAADQYLLEG 634 (717)
Q Consensus 558 ~~~~~~h~~il~~~s~~f~~~~~~~~~e~~~~~i~l~~~~~~~~~~~l~~~Yt~~~~~~~~~~~---~ll~~A~~~~~~~ 634 (717)
++.+..|+.+++++++.|+.|+.....+.....+.+.+.+++.++.+..|.|+..-....+... ..+..+++++.+.
T Consensus 109 ~g~~~~~~~~~~a~~~V~~~~~~~d~~~~~~~~~~~~d~~~~~~~~~~~F~~~~s~~~~~~~~~~~~~~~a~~f~~~~~~ 188 (297)
T KOG1987|consen 109 NGFLVAHKLVLVARSEVFEAMGKSDVFKESSKLITLLEEKPEVLEALNGFQVLPSQVSSVERIFEKHPDLAAAFKYKNRH 188 (297)
T ss_pred CcEEEcCceEEEeeecceeeecccccchhccccccccccchhhHhhhceEEEeccchHHHHHhhcCChhhhhccccccHH
Confidence 5669999999999999999999887666666666888999999999999999976554444443 7888999999999
Q ss_pred HHHHHHHHHHhcCChhcHHHHHHHHHHcCcHHHHHHHHHHHHH--hHHHhcCCchh
Q 005044 635 LKRLCEYTIAQDISLENVSSMYELSEAFHAISLRHTCILYIME--HFDKLSTRPGH 688 (717)
Q Consensus 635 l~~~c~~~l~~~i~~~n~~~~~~~a~~~~~~~L~~~~~~~i~~--~~~~~~~~~~f 688 (717)
++..|...+...+...++...+..+..++...+...+..++.. ++..+.++.++
T Consensus 189 lk~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ld~l~~~~~~ 244 (297)
T KOG1987|consen 189 LKLACMPVLLSLIETLNVSQSLQEASNYDLKEAKSALTYVIAAGFKLDWLEKKLNE 244 (297)
T ss_pred HHHHHHHHHHHHHHhhhhcccHHHhchhHHHHHHHHHHHHHhccchHhHHHHHHHH
Confidence 9999999999999888888888999999999999999999986 66666654444
No 158
>KOG2062 consensus 26S proteasome regulatory complex, subunit RPN2/PSMD1 [Posttranslational modification, protein turnover, chaperones]
Probab=96.97 E-value=0.054 Score=57.74 Aligned_cols=160 Identities=21% Similarity=0.181 Sum_probs=105.8
Q ss_pred CcHHHHHhhcCCCHHHHHHHHHHHHHhhccChhhHHHHHhcCCHHHHHHH-HcCCCHHHHHHHHHHHHHhhcCChHHHHH
Q 005044 208 GIPPLVELLEFTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILM-LRSEDSAIHYEAVGVIGNLVHSSPNIKKE 286 (717)
Q Consensus 208 ~i~~L~~ll~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~g~i~~L~~l-l~~~~~~v~~~a~~~L~~l~~~~~~~~~~ 286 (717)
.=+.+-+++.+.++-+|......+..-=. .. .+.+++..|+.. .++.+.+||+.|+.+|+-++..+++.
T Consensus 520 Ad~lI~el~~dkdpilR~~Gm~t~alAy~-GT------gnnkair~lLh~aVsD~nDDVrRaAVialGFVl~~dp~~--- 589 (929)
T KOG2062|consen 520 ADPLIKELLRDKDPILRYGGMYTLALAYV-GT------GNNKAIRRLLHVAVSDVNDDVRRAAVIALGFVLFRDPEQ--- 589 (929)
T ss_pred hHHHHHHHhcCCchhhhhhhHHHHHHHHh-cc------CchhhHHHhhcccccccchHHHHHHHHHheeeEecChhh---
Confidence 34556677888888888776654432111 11 123566777776 56789999999999999998887765
Q ss_pred HHHcCChHHHHHhhcc-CChHHHHHHHHHHHHHhcCChhhHHHHHhcCChHHHHHHhcCCCHHHHHHHHHHHHHhhcCCC
Q 005044 287 VLAAGALQPVIGLLSS-CCSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQSPDVQLREMSAFALGRLAQDMH 365 (717)
Q Consensus 287 ~~~~g~l~~L~~ll~~-~~~~~~~~a~~~L~~l~~~~~~~~~~l~~~~~l~~L~~~l~~~~~~v~~~a~~~L~~l~~~~~ 365 (717)
++..+++|.. -++.||.-++.+|+-.|++.... . .+..|-.+..++..-||..|+-++..+.....
T Consensus 590 ------~~s~V~lLses~N~HVRyGaA~ALGIaCAGtG~~-e------Ai~lLepl~~D~~~fVRQgAlIa~amIm~Q~t 656 (929)
T KOG2062|consen 590 ------LPSTVSLLSESYNPHVRYGAAMALGIACAGTGLK-E------AINLLEPLTSDPVDFVRQGALIALAMIMIQQT 656 (929)
T ss_pred ------chHHHHHHhhhcChhhhhhHHHHHhhhhcCCCcH-H------HHHHHhhhhcChHHHHHHHHHHHHHHHHHhcc
Confidence 5667777765 56899999999999887653222 2 23445555567777899999998888774322
Q ss_pred CchhhHhcCChHHHHHhhcCCChhH
Q 005044 366 NQAGIAHNGGLVPLLKLLDSKNGSL 390 (717)
Q Consensus 366 ~~~~l~~~~~l~~L~~ll~~~~~~v 390 (717)
...----.++...+.+++.+++.+.
T Consensus 657 ~~~~pkv~~frk~l~kvI~dKhEd~ 681 (929)
T KOG2062|consen 657 EQLCPKVNGFRKQLEKVINDKHEDG 681 (929)
T ss_pred cccCchHHHHHHHHHHHhhhhhhHH
Confidence 2211122344556777776665544
No 159
>KOG1991 consensus Nuclear transport receptor RANBP7/RANBP8 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=96.90 E-value=0.46 Score=52.95 Aligned_cols=300 Identities=15% Similarity=0.106 Sum_probs=156.6
Q ss_pred HHHHHHHHHHHHHHhhc----ChhhHHHHHhCCChHHHHHhhcCCCCCccccCCCccchHHHhHHHHHHHHhc-CChhhH
Q 005044 76 DRAAAKRATHVLAELAK----NEEVVNWIVEGGAVPALVKHLQAPPTSEADRNLKPFEHEVEKGSAFALGLLA-VKPEHQ 150 (717)
Q Consensus 76 ~~~~~~~a~~~L~~l~~----~~~~~~~~~~~g~i~~L~~lL~~~~~~~~~~~~~~~~~~v~~~a~~~L~~l~-~~~~~~ 150 (717)
+......|++.++++++ ...++. ..+.=.++.+...++++.. -+|.+|++.++.++ .+-...
T Consensus 431 ~~rqkdGAL~~vgsl~~~L~K~s~~~~-~mE~flv~hVfP~f~s~~g------------~Lrarac~vl~~~~~~df~d~ 497 (1010)
T KOG1991|consen 431 NPRQKDGALRMVGSLASILLKKSPYKS-QMEYFLVNHVFPEFQSPYG------------YLRARACWVLSQFSSIDFKDP 497 (1010)
T ss_pred ChhhhhhHHHHHHHHHHHHccCCchHH-HHHHHHHHHhhHhhcCchh------------HHHHHHHHHHHHHHhccCCCh
Confidence 33345667777777665 222222 2333346667777777766 89999999999999 211111
Q ss_pred HHHHhCCChHHHHHHHhccccCCCccchhHHHHHHHHHHHHHhhcCchhhhHHHh--cCCcHHHHHhhcCCCHHHHHHHH
Q 005044 151 QLIVDNGALSHLVNLLKRHMDSNCSRAVNSVIRRAADAITNLAHENSSIKTRVRM--EGGIPPLVELLEFTDTKVQRAAA 228 (717)
Q Consensus 151 ~~~~~~~~i~~L~~lL~~~~~~~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~--~~~i~~L~~ll~~~~~~v~~~a~ 228 (717)
..-..++....+.|.+++.- .++..|+.+|..+....+.....+.. .+.+..|+.+.+.-+.+....+.
T Consensus 498 --~~l~~ale~t~~~l~~d~~l-------PV~VeAalALq~fI~~~~~~~e~~~~hvp~~mq~lL~L~ne~End~Lt~vm 568 (1010)
T KOG1991|consen 498 --NNLSEALELTHNCLLNDNEL-------PVRVEAALALQSFISNQEQADEKVSAHVPPIMQELLKLSNEVENDDLTNVM 568 (1010)
T ss_pred --HHHHHHHHHHHHHhccCCcC-------chhhHHHHHHHHHHhcchhhhhhHhhhhhHHHHHHHHHHHhcchhHHHHHH
Confidence 11123455566666643221 78889999999988866655433322 12333444444443333333332
Q ss_pred HH-HHHhhccChhhHHHHHhcCCHHHHHHHHcC---C---CHHHHHHHHHHHHHhhc------CChHHHHHHHHcCChHH
Q 005044 229 GA-LRTLAFKNDENKNQIVECNALPTLILMLRS---E---DSAIHYEAVGVIGNLVH------SSPNIKKEVLAAGALQP 295 (717)
Q Consensus 229 ~~-L~~L~~~~~~~~~~~~~~g~i~~L~~ll~~---~---~~~v~~~a~~~L~~l~~------~~~~~~~~~~~~g~l~~ 295 (717)
.. +...+..-......++. .+...+.+++.. . +.+=...|.++|..+.. ..+...+ -++.-.++.
T Consensus 569 e~iV~~fseElsPfA~eL~q-~La~~F~k~l~~~~~~~~~~ddk~iaA~GiL~Ti~Til~s~e~~p~vl~-~le~~~l~v 646 (1010)
T KOG1991|consen 569 EKIVCKFSEELSPFAVELCQ-NLAETFLKVLQTSEDEDESDDDKAIAASGILRTISTILLSLENHPEVLK-QLEPIVLPV 646 (1010)
T ss_pred HHHHHHHHHhhchhHHHHHH-HHHHHHHHHHhccCCCCccchHHHHHHHHHHHHHHHHHHHHhccHHHHH-HHHHHHHHH
Confidence 22 22222111111222222 345566677763 1 22334455555554421 1222211 122345666
Q ss_pred HHHhhccCChHHHHHHHHHHHHHhcCChhhHHHHHhcCChHHHHHHhcCCCHHHHHHHHHHHHHhhcCCCCchhhHhcC-
Q 005044 296 VIGLLSSCCSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQSPDVQLREMSAFALGRLAQDMHNQAGIAHNG- 374 (717)
Q Consensus 296 L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~l~~~~~l~~L~~~l~~~~~~v~~~a~~~L~~l~~~~~~~~~l~~~~- 374 (717)
+-..+.+.-.+.-++++..+.++....++....+ =++++.+.+.++....+.-....-+|.|......+ .+...+
T Consensus 647 i~~iL~~~i~dfyeE~~ei~~~~t~~~~~Isp~m--W~ll~li~e~~~~~~~dyf~d~~~~l~N~vt~g~~--~~~s~~~ 722 (1010)
T KOG1991|consen 647 IGFILKNDITDFYEELLEIVSSLTFLSKEISPIM--WGLLELILEVFQDDGIDYFTDMMPALHNYVTYGTP--SLLSNPD 722 (1010)
T ss_pred HHHHHHHhhHHHHHHHHHHHhhhhhhhcccCHHH--HHHHHHHHHHHhhhhHHHHHHHHHHHhhheeeCch--hhhccch
Confidence 6777777777888888887777654333322222 24667777777776666677777788887764332 232222
Q ss_pred ChHH----HHHhhcC--CChhHHHHHHHHHHhccC
Q 005044 375 GLVP----LLKLLDS--KNGSLQHNAAFALYGLAD 403 (717)
Q Consensus 375 ~l~~----L~~ll~~--~~~~v~~~a~~~L~~l~~ 403 (717)
.... +..++.+ ....-.+.|+..+..+..
T Consensus 723 y~~il~~i~~~~l~~e~~~D~d~~~a~kLle~iiL 757 (1010)
T KOG1991|consen 723 YLQILLEIIKKVLTSENGEDSDCESACKLLEVIIL 757 (1010)
T ss_pred HHHHHHHHHHHHHcCCCCchHHHHHHHHHHHHHHH
Confidence 1222 2333433 233334556666666644
No 160
>smart00185 ARM Armadillo/beta-catenin-like repeats. Approx. 40 amino acid repeat. Tandem repeats form superhelix of helices that is proposed to mediate interaction of beta-catenin with its ligands. Involved in transducing the Wingless/Wnt signal. In plakoglobin arm repeats bind alpha-catenin and N-cadherin.
Probab=96.87 E-value=0.003 Score=41.42 Aligned_cols=39 Identities=31% Similarity=0.514 Sum_probs=35.1
Q ss_pred hhHHHHHhcCChHHHHHHhcCCCHHHHHHHHHHHHHhhc
Q 005044 324 DCKVHIVQRGAVRPLIEMLQSPDVQLREMSAFALGRLAQ 362 (717)
Q Consensus 324 ~~~~~l~~~~~l~~L~~~l~~~~~~v~~~a~~~L~~l~~ 362 (717)
+.+..+.+.|+++.|+++++++++.++..++++|.||+.
T Consensus 3 ~~~~~i~~~g~i~~L~~ll~~~~~~i~~~a~~aL~nl~~ 41 (41)
T smart00185 3 EQKQAVVDAGGLPALVELLKSEDEEVVKEAAWALSNLSS 41 (41)
T ss_pred HHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHcC
Confidence 356778899999999999999999999999999999873
No 161
>KOG1058 consensus Vesicle coat complex COPI, beta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.86 E-value=0.054 Score=57.89 Aligned_cols=339 Identities=17% Similarity=0.140 Sum_probs=190.8
Q ss_pred HHHhHHHHHHHHhcCChhhHHHHHhCCChHHHHHHHhccccCCCccchhHHHHHHHHHHHHHhhcCchhhhHHHhcCCcH
Q 005044 131 EVEKGSAFALGLLAVKPEHQQLIVDNGALSHLVNLLKRHMDSNCSRAVNSVIRRAADAITNLAHENSSIKTRVRMEGGIP 210 (717)
Q Consensus 131 ~v~~~a~~~L~~l~~~~~~~~~~~~~~~i~~L~~lL~~~~~~~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~ 210 (717)
-+|-.+++.|..|- .++. -...+|.+...|...+. -++++|..++..+-...+. ++ .++-.
T Consensus 114 yiRG~TLRFLckLk-E~EL-----lepl~p~IracleHrhs--------YVRrNAilaifsIyk~~~~----L~-pDape 174 (948)
T KOG1058|consen 114 YIRGSTLRFLCKLK-EPEL-----LEPLMPSIRACLEHRHS--------YVRRNAILAIFSIYKNFEH----LI-PDAPE 174 (948)
T ss_pred hhcchhhhhhhhcC-cHHH-----hhhhHHHHHHHHhCcch--------hhhhhhheeehhHHhhhhh----hc-CChHH
Confidence 78888888887764 3332 23567888888888777 8999998888877653221 11 12223
Q ss_pred HHHHhh-cCCCHHHHHHHHHHHHHhhccChhhHHHHHhcCCHHHHHHHH---cCCCHHHHHHHHHHHHHhhcCChHHHHH
Q 005044 211 PLVELL-EFTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILML---RSEDSAIHYEAVGVIGNLVHSSPNIKKE 286 (717)
Q Consensus 211 ~L~~ll-~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~g~i~~L~~ll---~~~~~~v~~~a~~~L~~l~~~~~~~~~~ 286 (717)
.+-.+| ...++...+.|...|... +++. ++..|.... .+-++..+...+..|...+..++..+
T Consensus 175 Li~~fL~~e~DpsCkRNAFi~L~~~---D~Er--------Al~Yl~~~idqi~~~~~~LqlViVE~Irkv~~~~p~~~-- 241 (948)
T KOG1058|consen 175 LIESFLLTEQDPSCKRNAFLMLFTT---DPER--------ALNYLLSNIDQIPSFNDSLQLVIVELIRKVCLANPAEK-- 241 (948)
T ss_pred HHHHHHHhccCchhHHHHHHHHHhc---CHHH--------HHHHHHhhHhhccCccHHHHHHHHHHHHHHHhcCHHHh--
Confidence 333333 557788888877665543 3332 222233222 23356777888888888876655543
Q ss_pred HHHcCChHHHHHhhccCChHHHHHHHHHHHHHhcCChhhHHHHHhcCChHHHHHHhcC-CCHHHHHHHHHHHHHhhcCCC
Q 005044 287 VLAAGALQPVIGLLSSCCSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQS-PDVQLREMSAFALGRLAQDMH 365 (717)
Q Consensus 287 ~~~~g~l~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~l~~~~~l~~L~~~l~~-~~~~v~~~a~~~L~~l~~~~~ 365 (717)
...+..+..+|.+.++.++.+|+.+|.+++ .++.....- ...++.++.. ++..++.-.+.-|..+...
T Consensus 242 ---~~~i~~i~~lL~stssaV~fEaa~tlv~lS-~~p~alk~A-----a~~~i~l~~kesdnnvklIvldrl~~l~~~-- 310 (948)
T KOG1058|consen 242 ---ARYIRCIYNLLSSTSSAVIFEAAGTLVTLS-NDPTALKAA-----ASTYIDLLVKESDNNVKLIVLDRLSELKAL-- 310 (948)
T ss_pred ---hHHHHHHHHHHhcCCchhhhhhcceEEEcc-CCHHHHHHH-----HHHHHHHHHhccCcchhhhhHHHHHHHhhh--
Confidence 335778999999999999999999999985 444433222 2345555532 3444444444444444421
Q ss_pred CchhhHhcCChHHHHHhhcCCChhHHHHHHHHHHhccC--CCcchHHHHHhcCccccccchhHHhhhHHHHHHHHHHH--
Q 005044 366 NQAGIAHNGGLVPLLKLLDSKNGSLQHNAAFALYGLAD--NEDNVADFIRVGGVQKLQDGEFIVQATKDCVAKTLKRL-- 441 (717)
Q Consensus 366 ~~~~l~~~~~l~~L~~ll~~~~~~v~~~a~~~L~~l~~--~~~~~~~l~~~~~i~~L~~~~~~~~~~~~~~~~~~~~l-- 441 (717)
... +-.|.+-.++++|.+.+-+++..++.....|+. +.+....+....+...--.-......-+..+..++..-
T Consensus 311 -~~~-il~~l~mDvLrvLss~dldvr~Ktldi~ldLvssrNvediv~~Lkke~~kT~~~e~d~~~~yRqlLiktih~cav 388 (948)
T KOG1058|consen 311 -HEK-ILQGLIMDVLRVLSSPDLDVRSKTLDIALDLVSSRNVEDIVQFLKKEVMKTHNEESDDNGKYRQLLIKTIHACAV 388 (948)
T ss_pred -hHH-HHHHHHHHHHHHcCcccccHHHHHHHHHHhhhhhccHHHHHHHHHHHHHhccccccccchHHHHHHHHHHHHHhh
Confidence 111 223445567888999999999999999888864 33333333333221110000011111122222222111
Q ss_pred -HHHhhhchHHHHHHHHhhcchhHHHHHHHHHHhccCCCCCceeeecCCCHHHHHHHhcC-CCchhhhhhHHHHHHhhh
Q 005044 442 -EEKIHGRVLNHLLYLMRVAEKGVQRRVALALAHLCSPDDQRTIFIDGGGLELLLGLLGS-TNPKQQLDGAVALFKLAN 518 (717)
Q Consensus 442 -~~~~~~~~~~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~~~~~~l~~L~~ll~~-~~~~v~~~a~~~l~~L~~ 518 (717)
...+...+++.|+..+.+.++..-...+..+........+- ....+..|+.-+.. ....+-+-|+|.+..-+.
T Consensus 389 ~Fp~~aatvV~~ll~fisD~N~~aas~vl~FvrE~iek~p~L----r~~ii~~l~~~~~~irS~ki~rgalwi~GeYce 463 (948)
T KOG1058|consen 389 KFPEVAATVVSLLLDFISDSNEAAASDVLMFVREAIEKFPNL----RASIIEKLLETFPQIRSSKICRGALWILGEYCE 463 (948)
T ss_pred cChHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHhCchH----HHHHHHHHHHhhhhhcccccchhHHHHHHHHHh
Confidence 12245678999999999988776655555555544332211 12234444433322 444556667776654443
No 162
>PF13764 E3_UbLigase_R4: E3 ubiquitin-protein ligase UBR4
Probab=96.82 E-value=0.27 Score=55.12 Aligned_cols=196 Identities=18% Similarity=0.250 Sum_probs=118.3
Q ss_pred HHHhCCChHHHHHhhcCCCCCccccCCCccchHHHhHHHHHHHHhcCChhhHHHHHhCCChHHHHHHHhccccCCCccch
Q 005044 99 WIVEGGAVPALVKHLQAPPTSEADRNLKPFEHEVEKGSAFALGLLAVKPEHQQLIVDNGALSHLVNLLKRHMDSNCSRAV 178 (717)
Q Consensus 99 ~~~~~g~i~~L~~lL~~~~~~~~~~~~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~i~~L~~lL~~~~~~~~~~~~ 178 (717)
.+.+.|++..|+.++.+-..-. .+.......++.|...+.-+.+|..+++.|+++.|+..+...-........
T Consensus 112 v~~~~gGL~~ll~~l~~~~~~~-------~~~~ll~~llkLL~~c~Kv~~NR~~Ll~~~al~~LL~~L~~~l~~~~~~~~ 184 (802)
T PF13764_consen 112 VLAECGGLEVLLSRLDSIRDFS-------RGRELLQVLLKLLRYCCKVKVNRRALLELNALNRLLSVLNRALQANQNSSQ 184 (802)
T ss_pred HhhcCCCHHHHHHHHHhhcccc-------CcHHHHHHHHHHHHHHHhhHHHHHHHHHcCCHHHHHHHHHHHHhCcccccc
Confidence 3456899999999997643210 112566667788877778899999999999999999988643222110011
Q ss_pred hHHHHHHHHHHHHHhhcCchh----hhHHHh--------cCCcHHHHHhhcC----CCHHHHHHHHHHHHHhhccChhhH
Q 005044 179 NSVIRRAADAITNLAHENSSI----KTRVRM--------EGGIPPLVELLEF----TDTKVQRAAAGALRTLAFKNDENK 242 (717)
Q Consensus 179 ~~~~~~a~~~L~~l~~~~~~~----~~~~~~--------~~~i~~L~~ll~~----~~~~v~~~a~~~L~~L~~~~~~~~ 242 (717)
.++.+..+.++-.+...-... ...... ...+..+++.+.+ .++.+....+++|-+|+.++++..
T Consensus 185 ~~i~E~LL~IiE~ll~ea~~~~~~~~~~~~~~~~~~~~~~~~v~~lL~~l~s~~~r~~~~i~~~l~RiLP~Lt~G~~e~m 264 (802)
T PF13764_consen 185 AEIAEQLLEIIESLLSEANSSSSSESKSSSSLSGSEEQDKEQVEMLLERLNSPFVRSNPQILQALARILPFLTYGNEEKM 264 (802)
T ss_pred chHHHHHHHHHHHHHHHHhhhhhhhccccccccccccccHHHHHHHHHHhcCccccCCHHHHHHHHHHhhHHhcCCHHHH
Confidence 145555555555444321110 000011 1125666666654 468899999999999999888887
Q ss_pred HHHHhcCCHHHHHHHHc-----CCCHHHHHHHHHHHHHhhcC---C---hHHHHHHHHcCChHHHHHhhccCChH
Q 005044 243 NQIVECNALPTLILMLR-----SEDSAIHYEAVGVIGNLVHS---S---PNIKKEVLAAGALQPVIGLLSSCCSE 306 (717)
Q Consensus 243 ~~~~~~g~i~~L~~ll~-----~~~~~v~~~a~~~L~~l~~~---~---~~~~~~~~~~g~l~~L~~ll~~~~~~ 306 (717)
+.+++. +...+++=+ .++..+ .+.+++.++.+ + ...++.+++.|++...++.|....+.
T Consensus 265 ~~Lv~~--F~p~l~f~~~D~~~~~~~~~---~Le~F~~i~~~I~~~~~G~~LK~~Il~~GIv~~a~~YL~~~~P~ 334 (802)
T PF13764_consen 265 DALVEH--FKPYLDFDKFDEEHSPDEQF---KLECFCEIAEGIPNNSNGNRLKDKILESGIVQDAIDYLLKHFPS 334 (802)
T ss_pred HHHHHH--HHHhcChhhcccccCchHHH---HHHHHHHHHhcCCCCCchHHHHHHHHHhhHHHHHHHHHHHhCcc
Confidence 777654 232222211 112222 24444444432 2 24577888888888888888765553
No 163
>KOG1078 consensus Vesicle coat complex COPI, gamma subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.80 E-value=0.91 Score=49.32 Aligned_cols=271 Identities=16% Similarity=0.126 Sum_probs=152.8
Q ss_pred HHHHHHHHHHHHHhhcCchhhhHHHhcCCcHHHHHhhcCCCHHHHHHHHHHHHHhhccChhhHHHHHhcCCHHHHHHHHc
Q 005044 180 SVIRRAADAITNLAHENSSIKTRVRMEGGIPPLVELLEFTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLR 259 (717)
Q Consensus 180 ~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~g~i~~L~~ll~ 259 (717)
-+...++..+.++...... .+. ..+..|--++.++...+|..|.++|..++...|... ..+ =.-|-.+..
T Consensus 260 mV~~EaArai~~l~~~~~r---~l~--pavs~Lq~flssp~~~lRfaAvRtLnkvAm~~P~~v-~~c----N~elE~lIt 329 (865)
T KOG1078|consen 260 MVIYEAARAIVSLPNTNSR---ELA--PAVSVLQLFLSSPKVALRFAAVRTLNKVAMKHPQAV-TVC----NLDLESLIT 329 (865)
T ss_pred HHHHHHHHHHhhccccCHh---hcc--hHHHHHHHHhcCcHHHHHHHHHHHHHHHHHhCCccc-ccc----chhHHhhhc
Confidence 5667778877777643332 111 256677778888999999999999999987443221 111 123445566
Q ss_pred CCCHHHHHHHHHHHHHhhcCChHHHHHHHHcCChHHHHHhhccCChHHHHHHHHHHHHHhcCChhhHHHHHhcCChHHHH
Q 005044 260 SEDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLSSCCSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLI 339 (717)
Q Consensus 260 ~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~l~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~l~~~~~l~~L~ 339 (717)
+.+-.+...|..+|..- +.+.....+.. -+..++.=+.++.--+...|..+|++. .+.. ..+.+..|-
T Consensus 330 d~NrsIat~AITtLLKT--G~e~sv~rLm~--qI~~fv~disDeFKivvvdai~sLc~~---fp~k-----~~~~m~FL~ 397 (865)
T KOG1078|consen 330 DSNRSIATLAITTLLKT--GTESSVDRLMK--QISSFVSDISDEFKIVVVDAIRSLCLK---FPRK-----HTVMMNFLS 397 (865)
T ss_pred ccccchhHHHHHHHHHh--cchhHHHHHHH--HHHHHHHhccccceEEeHHHHHHHHhh---ccHH-----HHHHHHHHH
Confidence 66666666666665443 33333233222 133333333333333444444444443 2222 223456666
Q ss_pred HHhcC-CCHHHHHHHHHHHHHhhcCCCCchhhHhcCChHHHHHhhcCCChhHHHHHHHHHHhccCC-CcchHHHHHhcCc
Q 005044 340 EMLQS-PDVQLREMSAFALGRLAQDMHNQAGIAHNGGLVPLLKLLDSKNGSLQHNAAFALYGLADN-EDNVADFIRVGGV 417 (717)
Q Consensus 340 ~~l~~-~~~~v~~~a~~~L~~l~~~~~~~~~l~~~~~l~~L~~ll~~~~~~v~~~a~~~L~~l~~~-~~~~~~l~~~~~i 417 (717)
++|+. +..+-+.....++..+....+..+ ..++..|+..+.+.. ....+..+|.-|... +..
T Consensus 398 ~~Lr~eGg~e~K~aivd~Ii~iie~~pdsK----e~~L~~LCefIEDce--~~~i~~rILhlLG~EgP~a---------- 461 (865)
T KOG1078|consen 398 NMLREEGGFEFKRAIVDAIIDIIEENPDSK----ERGLEHLCEFIEDCE--FTQIAVRILHLLGKEGPKA---------- 461 (865)
T ss_pred HHHHhccCchHHHHHHHHHHHHHHhCcchh----hHHHHHHHHHHHhcc--chHHHHHHHHHHhccCCCC----------
Confidence 66654 456677777778877776444332 234556666665432 233444445444321 100
Q ss_pred cccccchhHHhhhHHHHHHHHHHHHHHhhhchHHHHHHHHhhcchhHHHHHHHHHHhccCCCCCceeeecCCCHHHHHHH
Q 005044 418 QKLQDGEFIVQATKDCVAKTLKRLEEKIHGRVLNHLLYLMRVAEKGVQRRVALALAHLCSPDDQRTIFIDGGGLELLLGL 497 (717)
Q Consensus 418 ~~L~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~~~~~~l~~L~~l 497 (717)
. ..+.-+..+.+...-.+..+|..|..+|.++..+.. .....+.-.|.+.
T Consensus 462 -~-------------------------~Pskyir~iyNRviLEn~ivRaaAv~alaKfg~~~~----~l~~sI~vllkRc 511 (865)
T KOG1078|consen 462 -P-------------------------NPSKYIRFIYNRVILENAIVRAAAVSALAKFGAQDV----VLLPSILVLLKRC 511 (865)
T ss_pred -C-------------------------CcchhhHHHhhhhhhhhhhhHHHHHHHHHHHhcCCC----CccccHHHHHHHH
Confidence 0 011133344555555678888899999999873322 1233456677788
Q ss_pred hcCCCchhhhhhHHHHHHhhh
Q 005044 498 LGSTNPKQQLDGAVALFKLAN 518 (717)
Q Consensus 498 l~~~~~~v~~~a~~~l~~L~~ 518 (717)
+.+.+.++|..|...+.++-.
T Consensus 512 ~~D~DdevRdrAtf~l~~l~~ 532 (865)
T KOG1078|consen 512 LNDSDDEVRDRATFYLKNLEE 532 (865)
T ss_pred hcCchHHHHHHHHHHHHHhhh
Confidence 888999999998888888773
No 164
>KOG1248 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.78 E-value=0.3 Score=55.46 Aligned_cols=224 Identities=15% Similarity=0.137 Sum_probs=134.4
Q ss_pred HHHhHHHHHHHHhcCChhhHHHHHhCCChHHHHHHHhccccCCCccchhHHHHHHHHHHHHHhhcCchhhhHHHhcCCcH
Q 005044 131 EVEKGSAFALGLLAVKPEHQQLIVDNGALSHLVNLLKRHMDSNCSRAVNSVIRRAADAITNLAHENSSIKTRVRMEGGIP 210 (717)
Q Consensus 131 ~v~~~a~~~L~~l~~~~~~~~~~~~~~~i~~L~~lL~~~~~~~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~ 210 (717)
.+|..+-++|..++..+....... .-+..+.+.|.+....... ..+...+.+|..+....+.-...++...+..
T Consensus 669 ~vQkK~yrlL~~l~~~~s~~~~~~--q~i~~I~n~L~ds~qs~~~----~~~~~rl~~L~~L~~~~~~e~~~~i~k~I~E 742 (1176)
T KOG1248|consen 669 KVQKKAYRLLEELSSSPSGEGLVE--QRIDDIFNSLLDSFQSSSS----PAQASRLKCLKRLLKLLSAEHCDLIPKLIPE 742 (1176)
T ss_pred HHHHHHHHHHHHHhcCCchhhHHH--HHHHHHHHHHHHHHhccch----HHHHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 899999999999995554432222 1244455544443322111 6677777777777765552222233333333
Q ss_pred HHHHhhcCCCHHHHHHHHHHHHHhhc--c--Ch--hhHHHHHhcCCHHHHHHHHcCCCHHHHHHHHHHHHHhhcCChHHH
Q 005044 211 PLVELLEFTDTKVQRAAAGALRTLAF--K--ND--ENKNQIVECNALPTLILMLRSEDSAIHYEAVGVIGNLVHSSPNIK 284 (717)
Q Consensus 211 ~L~~ll~~~~~~v~~~a~~~L~~L~~--~--~~--~~~~~~~~~g~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~ 284 (717)
.++.+ ++.+...++.+..+|..++. . ++ +.....++ ..++.+...+-.+...+....+-++..+........
T Consensus 743 vIL~~-Ke~n~~aR~~Af~lL~~i~~i~~~~d~g~e~~~~~ln-efl~~Isagl~gd~~~~~as~Ivai~~il~e~~~~l 820 (1176)
T KOG1248|consen 743 VILSL-KEVNVKARRNAFALLVFIGAIQSSLDDGNEPASAILN-EFLSIISAGLVGDSTRVVASDIVAITHILQEFKNIL 820 (1176)
T ss_pred HHHhc-ccccHHHHhhHHHHHHHHHHHHhhhcccccchHHHHH-HHHHHHHhhhcccHHHHHHHHHHHHHHHHHHHhccc
Confidence 44444 77888899999988888872 0 00 11111111 133334443333333333332444444443222222
Q ss_pred HHHHHcCChHHHHHhhccCChHHHHHHHHHHHHHhcCChhhHHHHHhcCChHHHHHHhcCCCHHHHHHHHHHHHHhhc
Q 005044 285 KEVLAAGALQPVIGLLSSCCSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQSPDVQLREMSAFALGRLAQ 362 (717)
Q Consensus 285 ~~~~~~g~l~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~l~~~~~l~~L~~~l~~~~~~v~~~a~~~L~~l~~ 362 (717)
....-.+++..+..+|.+.++++++.|...+..++...++........-+++.++.|.++....++...-..|-.|++
T Consensus 821 d~~~l~~li~~V~~~L~s~sreI~kaAI~fikvlv~~~pe~~l~~~~~~LL~sll~ls~d~k~~~r~Kvr~LlekLir 898 (1176)
T KOG1248|consen 821 DDETLEKLISMVCLYLASNSREIAKAAIGFIKVLVYKFPEECLSPHLEELLPSLLALSHDHKIKVRKKVRLLLEKLIR 898 (1176)
T ss_pred cHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHcCCHHHHhhhHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHH
Confidence 222334566777778888999999999999999987777665555555588999999888888888888777777775
No 165
>PF08569 Mo25: Mo25-like; InterPro: IPR013878 Mo25-like proteins are involved in both polarised growth and cytokinesis. In fission yeast Mo25 is localised alternately to the spindle pole body and to the site of cell division in a cell cycle dependent manner [, ]. ; PDB: 2WTK_A 1UPK_A 3GNI_A 1UPL_A.
Probab=96.75 E-value=0.12 Score=51.95 Aligned_cols=206 Identities=15% Similarity=0.135 Sum_probs=143.9
Q ss_pred HHHhCCChHHHHHHHhccccCCCccchhHHHHHHHHHHHHHhhcCchhhh-HHH--hcCC-cHHHHHhhcC-CCHHHHHH
Q 005044 152 LIVDNGALSHLVNLLKRHMDSNCSRAVNSVIRRAADAITNLAHENSSIKT-RVR--MEGG-IPPLVELLEF-TDTKVQRA 226 (717)
Q Consensus 152 ~~~~~~~i~~L~~lL~~~~~~~~~~~~~~~~~~a~~~L~~l~~~~~~~~~-~~~--~~~~-i~~L~~ll~~-~~~~v~~~ 226 (717)
.+...+.+..|+..|..-+- +.+..++.+..++.......+. ..+ -..- -..+..++.. .++++-..
T Consensus 71 Ei~~~dll~~Li~~L~~L~f--------EsrKdv~~if~~llr~~~~~~~~p~v~yl~~~~peil~~L~~gy~~~dial~ 142 (335)
T PF08569_consen 71 EIYRSDLLYLLIRNLPKLDF--------ESRKDVAQIFSNLLRRQIGSRSPPTVDYLERHRPEILDILLRGYENPDIALN 142 (335)
T ss_dssp HHHHHTHHHHHHHTGGGS-H--------HHHHHHHHHHHHHHT--BTTB--HHHHHHHT--THHHHHHHHGGGSTTTHHH
T ss_pred HHHHhCHHHHHHHHhhhCCC--------cccccHHHHHHHHHhhccCCCCCchHHHHHhCCHHHHHHHHHHhcCccccch
Confidence 34455777888887776544 8888899999998875544432 111 1112 2222222221 35666677
Q ss_pred HHHHHHHhhccChhhHHHHHhcCCHHHHHHHHcCCCHHHHHHHHHHHHHhhcCChHHHHHHHHc---CChHHHHHhhccC
Q 005044 227 AAGALRTLAFKNDENKNQIVECNALPTLILMLRSEDSAIHYEAVGVIGNLVHSSPNIKKEVLAA---GALQPVIGLLSSC 303 (717)
Q Consensus 227 a~~~L~~L~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~---g~l~~L~~ll~~~ 303 (717)
+...|+..+. .+...+.+.....+..+.+.++.++-++...|..++..+...+.......+.. ..+..+..++.++
T Consensus 143 ~g~mlRec~k-~e~l~~~iL~~~~f~~ff~~~~~~~Fdiasdaf~t~~~llt~hk~~~a~fl~~n~d~ff~~~~~Ll~s~ 221 (335)
T PF08569_consen 143 CGDMLRECIK-HESLAKIILYSECFWKFFKYVQLPNFDIASDAFSTFKELLTRHKKLVAEFLSNNYDRFFQKYNKLLESS 221 (335)
T ss_dssp HHHHHHHHTT-SHHHHHHHHTSGGGGGHHHHTTSSSHHHHHHHHHHHHHHHHSSHHHHHHHHHHTHHHHHHHHHHHCT-S
T ss_pred HHHHHHHHHh-hHHHHHHHhCcHHHHHHHHHhcCCccHhHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHccCC
Confidence 7778888876 56667777788888899999999999999999999999888777766666654 3567888899999
Q ss_pred ChHHHHHHHHHHHHHhcCChhh---HHHHHhcCChHHHHHHhcCCCHHHHHHHHHHHHHhhcCCCC
Q 005044 304 CSESQREAALLLGQFAATDSDC---KVHIVQRGAVRPLIEMLQSPDVQLREMSAFALGRLAQDMHN 366 (717)
Q Consensus 304 ~~~~~~~a~~~L~~l~~~~~~~---~~~l~~~~~l~~L~~~l~~~~~~v~~~a~~~L~~l~~~~~~ 366 (717)
+.-++++++..|+.+-...... ...+.+..-+..++.+|++....++..|..++.-+..++..
T Consensus 222 NYvtkrqslkLL~ellldr~n~~vm~~yi~~~~nLkl~M~lL~d~sk~Iq~eAFhvFKvFVANp~K 287 (335)
T PF08569_consen 222 NYVTKRQSLKLLGELLLDRSNFNVMTRYISSPENLKLMMNLLRDKSKNIQFEAFHVFKVFVANPNK 287 (335)
T ss_dssp SHHHHHHHHHHHHHHHHSGGGHHHHHHHTT-HHHHHHHHHHTT-S-HHHHHHHHHHHHHHHH-SS-
T ss_pred CeEeehhhHHHHHHHHHchhHHHHHHHHHCCHHHHHHHHHHhcCcchhhhHHHHHHHHHHHhCCCC
Confidence 9999999999999997443222 23344567788999999999999999999999988877543
No 166
>PRK14707 hypothetical protein; Provisional
Probab=96.74 E-value=0.47 Score=57.07 Aligned_cols=266 Identities=18% Similarity=0.161 Sum_probs=141.3
Q ss_pred HHHhHHHHHHHHhcCChhhHHHHHhCCChHHHHHHHhccccCCCccchhHHHHHHHHHHHHHhhcCchhhhHHHhcCCcH
Q 005044 131 EVEKGSAFALGLLAVKPEHQQLIVDNGALSHLVNLLKRHMDSNCSRAVNSVIRRAADAITNLAHENSSIKTRVRMEGGIP 210 (717)
Q Consensus 131 ~v~~~a~~~L~~l~~~~~~~~~~~~~~~i~~L~~lL~~~~~~~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~ 210 (717)
..+..+...-..+++....+..+ +...+...++.|....+. .....++..|..=...++..++.+-..+.-.
T Consensus 222 ~c~~aa~~la~~l~~~~~l~~~~-~~q~va~~lN~lsKwp~~-------~~C~~a~~~lA~rl~~~~~l~~al~~q~van 293 (2710)
T PRK14707 222 DCGNAVSALAERLADESRLRNEL-KPQELGNALNALSKWADT-------PVCAAAASALAERLVDDPGLRKALDPINVTQ 293 (2710)
T ss_pred hHHHHHHHHHHHHcCcHHHHHhC-ChHHHHHHHHHHhcCCCc-------hHHHHHHHHHHHHHhhhHHHHHhcCHHHHHH
Confidence 55544444444455555544333 334466666667666543 4555555555443334555555544434334
Q ss_pred HHHHhhcCCCHHHHHHHHHHHHHhhccChhhHHHHHhcCCHHHHHHHH-cCCCHHHHHHHHHHHHHhhcCChHHHHHHHH
Q 005044 211 PLVELLEFTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILML-RSEDSAIHYEAVGVIGNLVHSSPNIKKEVLA 289 (717)
Q Consensus 211 ~L~~ll~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~g~i~~L~~ll-~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~ 289 (717)
.|-.+-+.++..+-..|...|..=..++++..+.+-..+ +...+..| +=++..+...|+..|..=...++..++.+--
T Consensus 294 alNalSKwpd~~vc~~Aa~~la~rl~~d~~l~~~~~~~~-~~~~LNalsKWpd~~~C~~Aa~~LA~rl~~d~~l~~~l~~ 372 (2710)
T PRK14707 294 ALNALSKWADLPVCAEAAIALAERLADDPELCKALNARG-LSTALNALSKWPDNPVCAAAVSALAERLVADPELRKDLEP 372 (2710)
T ss_pred HHhhhhcCCCchHHHHHHHHHHHHHhccHhhhhccchHH-HHHHHHHhhcCCCchhHHHHHHHHHHHhccCHhhhcccch
Confidence 444445567766655555555444434666554443333 33444444 3356666677777766655566666665554
Q ss_pred cCChHHHHHhhccCChHHHHHHHHHHHHHhcCChhhHHHHHhcCChHHHHHHhcCCCHHHHHHHHHHHHHhh-cCCCCch
Q 005044 290 AGALQPVIGLLSSCCSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQSPDVQLREMSAFALGRLA-QDMHNQA 368 (717)
Q Consensus 290 ~g~l~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~l~~~~~l~~L~~~l~~~~~~v~~~a~~~L~~l~-~~~~~~~ 368 (717)
.|+-..|-.+-+=++..+...++..|..-..++++.+..+-..|+-..|-.+-+=++..++..++..|..-. .+.+-+.
T Consensus 373 q~~a~~lNalsKWp~~~~c~~aa~~LA~~l~~d~~l~~~~~~Q~van~lnalsKWPd~~~C~~aa~~lA~~la~d~~l~~ 452 (2710)
T PRK14707 373 QGVSSVLNALSKWPDTPVCAAAASALAEHVVDDLELRKGLDPQGVSNALNALAKWPDLPICGQAVSALAGRLAHDTELCK 452 (2710)
T ss_pred hHHHHHHhhhhcCCCchHHHHHHHHHHHHhccChhhhhhcchhhHHHHHHHhhcCCcchhHHHHHHHHHHHHhccHHHHh
Confidence 444444444444456667777777777655677777777766666555555555578777777777776543 3333333
Q ss_pred hhHhcCChHHHHHhhc-CCChhHHHHHHHHH-HhccCCCc
Q 005044 369 GIAHNGGLVPLLKLLD-SKNGSLQHNAAFAL-YGLADNED 406 (717)
Q Consensus 369 ~l~~~~~l~~L~~ll~-~~~~~v~~~a~~~L-~~l~~~~~ 406 (717)
.+--.+ +...++.+. =++..+-..++..| ..|+...+
T Consensus 453 ~~~p~~-va~~LnalSKWPd~p~c~~aa~~La~~l~~~~~ 491 (2710)
T PRK14707 453 ALDPIN-VTQALDALSKWPDTPICGQTASALAARLAHERR 491 (2710)
T ss_pred hcChHH-HHHHHHHhhcCCCChhHHHHHHHHHHHhcccHH
Confidence 222222 323333332 24444444444443 34454443
No 167
>KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning]
Probab=96.73 E-value=0.22 Score=54.27 Aligned_cols=347 Identities=14% Similarity=0.185 Sum_probs=181.6
Q ss_pred HHHhHHHHHHHHhcCChhhHHHHHhCCChHHHHHHHhccccCCCccchhHHHHHHHHHHHHHhhcCchhhhH------HH
Q 005044 131 EVEKGSAFALGLLAVKPEHQQLIVDNGALSHLVNLLKRHMDSNCSRAVNSVIRRAADAITNLAHENSSIKTR------VR 204 (717)
Q Consensus 131 ~v~~~a~~~L~~l~~~~~~~~~~~~~~~i~~L~~lL~~~~~~~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~------~~ 204 (717)
-+.-.+++.|..|+....+...+++.+++..|+..-+-+ +.......+|+.+.. ....-.. .+
T Consensus 368 ~l~~~~~k~~~~l~~h~kfa~~fv~~~gi~kll~vpr~s----------~~~~g~s~cly~~~~-~q~~mervc~~p~~v 436 (1516)
T KOG1832|consen 368 PLLPDVMKLICALAAHRKFAAMFVERRGILKLLAVPRVS----------ETFYGLSSCLYTIGS-LQGIMERVCALPLVV 436 (1516)
T ss_pred cccHHHHHHHHHHHHhhHHHHHHHHhhhhHHHhcCCCch----------hhhhhHHHHHHHHhh-hhhHHHHHhhccHHH
Confidence 344567778888887777888889999988887754433 222233344544443 1111111 11
Q ss_pred hcCCcHHHHHhhcCCC------HHHHHHHHHHHHHhhccChhhHHHHHhcCCHHHHHHHHcC--------C---------
Q 005044 205 MEGGIPPLVELLEFTD------TKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRS--------E--------- 261 (717)
Q Consensus 205 ~~~~i~~L~~ll~~~~------~~v~~~a~~~L~~L~~~~~~~~~~~~~~g~i~~L~~ll~~--------~--------- 261 (717)
-..++..-+.++..+. ..+-..++..++.+. ..+-....+..|+.++++ .
T Consensus 437 ~~~vv~~~~~l~~cs~~~~~~~~~~ff~~~f~frail-------~~fd~~d~l~~l~~~~~~~~~~~~~n~d~~l~e~~i 509 (1516)
T KOG1832|consen 437 IHQVVKLAIELLDCSQDQARKNSALFFAAAFVFRAIL-------DAFDAQDSLQKLLAILKDAASVTGANTDRSLPEVMI 509 (1516)
T ss_pred HHHHHHHHHHHHhcchhhccchHHHHHHHHHHHHHHH-------HHHhhhhHHHHHHHHHHHHHHHhccCcCccccHHHh
Confidence 1223334444554332 233334444444333 223334455666655541 1
Q ss_pred --CHHHHHHHHHHHHHhhcC-----ChHHHHHHHHcCChHHHHHhhccCC------hHHHHHHHHHHHHHhcCChhh---
Q 005044 262 --DSAIHYEAVGVIGNLVHS-----SPNIKKEVLAAGALQPVIGLLSSCC------SESQREAALLLGQFAATDSDC--- 325 (717)
Q Consensus 262 --~~~v~~~a~~~L~~l~~~-----~~~~~~~~~~~g~l~~L~~ll~~~~------~~~~~~a~~~L~~l~~~~~~~--- 325 (717)
+...-...|.+|...... .+..++.-++.+.....+.-+.... ....++.++-+..+....+.+
T Consensus 510 ~ss~Q~~~htC~alR~Yf~AHl~Ikve~~~k~~~~r~~~g~~~~~i~~~~~P~~~s~~~~e~I~~q~e~~~~~gp~f~~~ 589 (1516)
T KOG1832|consen 510 SSSKQMAFHTCFALRQYFRAHLLIKVESIRKSRISRGGVGSSMKNIRAAYKPLDISNEAVEAIFLQLEKDRRLGPTFVKA 589 (1516)
T ss_pred hhhhhhhhhhHHHHHHHHHHHHHHHHHhhhhhhcccCCCCccccccccCCCcchhhhhHHHHHHHHHHHHHHhChhhhhh
Confidence 122234455555544221 2233344444555555555443321 223344455444443333311
Q ss_pred ----HHHHHhcCChHHHHHHhcC--------CCHHHHHHHHHHHHHhhcCCCCchhhHhc--------CChHHHHHhhc-
Q 005044 326 ----KVHIVQRGAVRPLIEMLQS--------PDVQLREMSAFALGRLAQDMHNQAGIAHN--------GGLVPLLKLLD- 384 (717)
Q Consensus 326 ----~~~l~~~~~l~~L~~~l~~--------~~~~v~~~a~~~L~~l~~~~~~~~~l~~~--------~~l~~L~~ll~- 384 (717)
...+.+.+++..++++... +..++...|+.+|+-+..-+..+..++.. .|+..+++...
T Consensus 590 ~w~~aenflkls~v~~~L~l~~~~~~w~~~spR~d~~~~Al~vL~i~t~iP~iq~~La~~~~~n~~aydGiaIiL~~a~g 669 (1516)
T KOG1832|consen 590 QWPAAENFLKLSGVVTMLELCQTPPVWRYLSPRHDLLQYALGVLHIVTSIPDIQKALAHATLSNNRAYDGIAIILDAANG 669 (1516)
T ss_pred cchHHHHHHHhHHHHHHHHHHhcCccccccCcchHHHHHHHhheeeeEecchHHHHHHHHHhhcccccCceEEEeecccc
Confidence 2346667788888888753 23467778888888777766666554432 13333333321
Q ss_pred ---CCChhHHHHHHHHHHhccCCC-cchHHHHHhcCccccccchhH-HhhhHHHHHHHHHHHHHHh-hhchHHHHHHHHh
Q 005044 385 ---SKNGSLQHNAAFALYGLADNE-DNVADFIRVGGVQKLQDGEFI-VQATKDCVAKTLKRLEEKI-HGRVLNHLLYLMR 458 (717)
Q Consensus 385 ---~~~~~v~~~a~~~L~~l~~~~-~~~~~l~~~~~i~~L~~~~~~-~~~~~~~~~~~~~~l~~~~-~~~~~~~L~~ll~ 458 (717)
-.+++++..|+.+|.|....+ +++...+..=+-+.=-...+. ..+...-+...+.+.+..+ ..+.+..|++++.
T Consensus 670 ~~~i~Dpei~~~AL~vIincVc~pp~~r~s~i~~v~S~~g~~r~~l~~~~ks~~le~~l~~mw~~Vr~ndGIkiLl~Ll~ 749 (1516)
T KOG1832|consen 670 SNSIVDPEIIQPALNVIINCVCPPPTTRPSTIVAVGSQSGDRRIFLGAGTKSAKLEQVLRQMWEAVRGNDGIKILLKLLQ 749 (1516)
T ss_pred cccccCHHHHHHHHhhhheeecCCCCcchhhhhhccccCCCccccccCCCchHHHHHHHHHHHHHHhcCccHHHHHHHHh
Confidence 237899999999999996654 555443321100000000000 0111112333444555444 5568999999998
Q ss_pred hcch-----hHHHHHHHHHHhccCCCCCceeee-----cCCCHHHHH
Q 005044 459 VAEK-----GVQRRVALALAHLCSPDDQRTIFI-----DGGGLELLL 495 (717)
Q Consensus 459 ~~~~-----~v~~~a~~aL~~l~~~~~~~~~~~-----~~~~l~~L~ 495 (717)
...| .+|..|+++|.-|+.++..++++. ...+++.|.
T Consensus 750 ~k~P~t~aD~IRalAc~~L~GLaR~~tVrQIltKLpLvt~~~~q~lm 796 (1516)
T KOG1832|consen 750 YKNPPTTADCIRALACRVLLGLARDDTVRQILTKLPLVTNERAQILM 796 (1516)
T ss_pred ccCCCCcHHHHHHHHHHHHhccccCcHHHHHHHhCccccchHHHHHh
Confidence 7643 589999999999999988666443 344455544
No 168
>KOG3473 consensus RNA polymerase II transcription elongation factor Elongin/SIII, subunit elongin C [Transcription]
Probab=96.71 E-value=0.0068 Score=46.17 Aligned_cols=74 Identities=26% Similarity=0.456 Sum_probs=60.0
Q ss_pred cCeEeehhHHHHhhccHHHHHhhcCC--CCCCCCcceEcCCCCHHHHHHHHHHH-----hcCc------cccchhhHHHH
Q 005044 557 EGRRFYAHRICLLASSDAFRAMFDGG--YREKDARDIEIPNIRWEVFELMMRFI-----YTGS------VDVTLDIAQDL 623 (717)
Q Consensus 557 ~~~~~~~h~~il~~~s~~f~~~~~~~--~~e~~~~~i~l~~~~~~~~~~~l~~~-----Yt~~------~~~~~~~~~~l 623 (717)
+|..|-..|.+ +.-|+-.|+||+|. +.|+...++.+++++...++.+.+|+ |++. ++|+++.+.++
T Consensus 25 Ddhefiikre~-AmtSgTiraml~gpg~~se~~~n~v~f~di~shiLeKvc~Yl~Yk~rY~~~s~eiPeF~IppemaleL 103 (112)
T KOG3473|consen 25 DDHEFIIKREH-AMTSGTIRAMLSGPGVFSEAEKNEVYFRDIPSHILEKVCEYLAYKVRYTNSSTEIPEFDIPPEMALEL 103 (112)
T ss_pred CCcEEEEeehh-hhhhhHHHHHHcCCccccccccceEEeccchHHHHHHHHHHhhheeeeccccccCCCCCCCHHHHHHH
Confidence 45677777765 44789999999976 45666778999999999999999998 3443 45889999999
Q ss_pred HHHHHhhC
Q 005044 624 LRAADQYL 631 (717)
Q Consensus 624 l~~A~~~~ 631 (717)
+.+|+++.
T Consensus 104 L~aAn~Le 111 (112)
T KOG3473|consen 104 LMAANYLE 111 (112)
T ss_pred HHHhhhhc
Confidence 99999875
No 169
>KOG4535 consensus HEAT and armadillo repeat-containing protein [General function prediction only]
Probab=96.69 E-value=0.014 Score=58.67 Aligned_cols=306 Identities=15% Similarity=0.136 Sum_probs=151.5
Q ss_pred HHHHHHHHHHHHHHhhcChhhHHHHHhCCChHHHHHhhcCCCCCccccCCCccchHHHhHHHHHHHHhc------CChhh
Q 005044 76 DRAAAKRATHVLAELAKNEEVVNWIVEGGAVPALVKHLQAPPTSEADRNLKPFEHEVEKGSAFALGLLA------VKPEH 149 (717)
Q Consensus 76 ~~~~~~~a~~~L~~l~~~~~~~~~~~~~g~i~~L~~lL~~~~~~~~~~~~~~~~~~v~~~a~~~L~~l~------~~~~~ 149 (717)
+..++.++++.|..++.+-...+.. .-.+.+.+...-. .-+|.++..+.+++..+. ..|+.
T Consensus 268 ps~~rle~~qvl~~~a~~~~~~~~~-----~~~l~RvI~~~~~--------~~~p~~~l~~a~ll~~lg~~lv~~~~P~~ 334 (728)
T KOG4535|consen 268 PSPMRLEALQVLTLLARYFSMTQAY-----LMELGRVICKCMG--------EADPSIQLHGAKLLEELGTGLIQQYKPDS 334 (728)
T ss_pred CchhHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHccCC--------CCChHHHHHHHHHHHHHHHHHhhhcCCCc
Confidence 4457999999999888743222211 1122222222111 013489999999988876 22332
Q ss_pred HHHHHhCCChHHHHHHHhccccCC-CccchhHHHHHHHHHHHHHhhcC----chhhhHHHhcCCcHHHHHhh-cCCCHHH
Q 005044 150 QQLIVDNGALSHLVNLLKRHMDSN-CSRAVNSVIRRAADAITNLAHEN----SSIKTRVRMEGGIPPLVELL-EFTDTKV 223 (717)
Q Consensus 150 ~~~~~~~~~i~~L~~lL~~~~~~~-~~~~~~~~~~~a~~~L~~l~~~~----~~~~~~~~~~~~i~~L~~ll-~~~~~~v 223 (717)
.+.-...+.+-.+. +....... ....-...+...+..+.++.... ++.++. ..+.+..-+ .+.+.-+
T Consensus 335 ~k~~~q~~~fw~~~--l~~p~~~~~YDs~~~Tl~~s~Cdals~i~~~~f~~lpn~~~T-----~~~~Fl~GC~d~~~~lv 407 (728)
T KOG4535|consen 335 TKAPDQRAPFWTMM--LNGPLPRALYDSEHPTLQASACDALSSILPEAFSNLPNDRQT-----LCITFLLGCNDSKNRLV 407 (728)
T ss_pred ccchhhhccHHHHH--ccCCChhhhhhhcCCCchhHHHHHHhhcCchhhcCCCCcchh-----hhHHHHhcccchHHHHH
Confidence 22222222111111 10000000 00000145556666666665311 111110 112222222 2334446
Q ss_pred HHHHHHHHHHhhccChhhHHH-HHhcCCHHHHHHHHcCCCHHHHHHHHHHHHHhhcC----ChH---HHHHHHHcCChHH
Q 005044 224 QRAAAGALRTLAFKNDENKNQ-IVECNALPTLILMLRSEDSAIHYEAVGVIGNLVHS----SPN---IKKEVLAAGALQP 295 (717)
Q Consensus 224 ~~~a~~~L~~L~~~~~~~~~~-~~~~g~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~----~~~---~~~~~~~~g~l~~ 295 (717)
+..|.+++..+..+ +..+.. ..-......++..+.+..-.++..++|+++|++.. -+. ....+. .-.+..
T Consensus 408 ~~aA~Ra~~VyVLH-p~lr~d~~fv~~aa~~il~sl~d~~ln~r~KaawtlgnITdAL~~~~Ps~~s~~eR~s-g~ll~~ 485 (728)
T KOG4535|consen 408 KAAASRALGVYVLH-PCLRQDVIFVADAANAILMSLEDKSLNVRAKAAWSLGNITDALIVNMPTPDSFQERFS-GLLLLK 485 (728)
T ss_pred HHHHHhhceeEEec-cchhhhHHHHHHHHHHHHHHhhhHhHhHHHHHHHHhhhhHHHHHcCCCCchHHHHHHH-HHHHHH
Confidence 67777777776653 322222 22233456666777777778899999999999531 111 111111 112222
Q ss_pred HHHhhc---cCChHHHHHHHHHHHHHhcCCh---hhHHHHHhcCChHHHHHH-hcCCCHHHHHHHHHHHHHhhcCCCCc-
Q 005044 296 VIGLLS---SCCSESQREAALLLGQFAATDS---DCKVHIVQRGAVRPLIEM-LQSPDVQLREMSAFALGRLAQDMHNQ- 367 (717)
Q Consensus 296 L~~ll~---~~~~~~~~~a~~~L~~l~~~~~---~~~~~l~~~~~l~~L~~~-l~~~~~~v~~~a~~~L~~l~~~~~~~- 367 (717)
++..-. .+..+++..+..+|+|+...-. +........+.+..+... .-.....|+-++|.+++||..++.-.
T Consensus 486 ~~~~A~~~~Ad~dkV~~navraLgnllQvlq~i~~~~~~e~~~~~~~~l~~~v~~~~~~kV~WNaCya~gNLfkn~a~~l 565 (728)
T KOG4535|consen 486 MLRSAIEASADKDKVKSNAVRALGNLLQFLQPIEKPTFAEIIEESIQALISTVLTEAAMKVRWNACYAMGNLFKNPALPL 565 (728)
T ss_pred HHHHHHHhhhhhhhhhhHHHHHHhhHHHHHHHhhhccHHHHHHHHHHhcccceecccccccchHHHHHHHHhhcCccccc
Confidence 222221 2346788899999999852111 000001111112222211 12356789999999999999876542
Q ss_pred -hhhHhcCChHHHHHhh-cCCChhHHHHHHHHHHhccC
Q 005044 368 -AGIAHNGGLVPLLKLL-DSKNGSLQHNAAFALYGLAD 403 (717)
Q Consensus 368 -~~l~~~~~l~~L~~ll-~~~~~~v~~~a~~~L~~l~~ 403 (717)
..-......+.|..++ ...|-.||..|+.+|..-..
T Consensus 566 q~~~wA~~~F~~L~~Lv~~~~NFKVRi~AA~aL~vp~~ 603 (728)
T KOG4535|consen 566 QTAPWASQAFNALTSLVTSCKNFKVRIRAAAALSVPGK 603 (728)
T ss_pred cCCCchHHHHHHHHHHHHHhccceEeehhhhhhcCCCC
Confidence 1112223344566666 45788899999998876654
No 170
>KOG1991 consensus Nuclear transport receptor RANBP7/RANBP8 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=96.67 E-value=0.5 Score=52.65 Aligned_cols=259 Identities=14% Similarity=0.095 Sum_probs=132.8
Q ss_pred HHHHHHHHhc--CChhhHHHHHhCCChHHHHHHHhccccCCCccchhHHHHHHHHHHHHHhhc---CchhhhHHHhcCCc
Q 005044 135 GSAFALGLLA--VKPEHQQLIVDNGALSHLVNLLKRHMDSNCSRAVNSVIRRAADAITNLAHE---NSSIKTRVRMEGGI 209 (717)
Q Consensus 135 ~a~~~L~~l~--~~~~~~~~~~~~~~i~~L~~lL~~~~~~~~~~~~~~~~~~a~~~L~~l~~~---~~~~~~~~~~~~~i 209 (717)
+|...+..++ ..++. -.+.++.+++.+.+....+.+.....-...|+.++++++.. ....+. ..+.=.+
T Consensus 391 Aa~~~l~~~~~KR~ke~-----l~k~l~F~~~Il~~~~~~~~~~~~~rqkdGAL~~vgsl~~~L~K~s~~~~-~mE~flv 464 (1010)
T KOG1991|consen 391 AALDFLTTLVSKRGKET-----LPKILSFIVDILTRYKEASPPNKNPRQKDGALRMVGSLASILLKKSPYKS-QMEYFLV 464 (1010)
T ss_pred HHHHHHHHHHHhcchhh-----hhhHHHHHHHHHHhhcccCCCccChhhhhhHHHHHHHHHHHHccCCchHH-HHHHHHH
Confidence 4566666666 22332 23567778888875544333322235667788888888842 222221 1222234
Q ss_pred HHHHHhhcCCCHHHHHHHHHHHHHhhccChhhHHHHHhcCCHHHHHHHHc-CCCHHHHHHHHHHHHHhhcCChHHHHHHH
Q 005044 210 PPLVELLEFTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLR-SEDSAIHYEAVGVIGNLVHSSPNIKKEVL 288 (717)
Q Consensus 210 ~~L~~ll~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~g~i~~L~~ll~-~~~~~v~~~a~~~L~~l~~~~~~~~~~~~ 288 (717)
+.+...++++.--+|..|||++..++.-+=.....+ ..++......|. +.+-.|+..|+-+|..+..+.+.....+.
T Consensus 465 ~hVfP~f~s~~g~Lrarac~vl~~~~~~df~d~~~l--~~ale~t~~~l~~d~~lPV~VeAalALq~fI~~~~~~~e~~~ 542 (1010)
T KOG1991|consen 465 NHVFPEFQSPYGYLRARACWVLSQFSSIDFKDPNNL--SEALELTHNCLLNDNELPVRVEAALALQSFISNQEQADEKVS 542 (1010)
T ss_pred HHhhHhhcCchhHHHHHHHHHHHHHHhccCCChHHH--HHHHHHHHHHhccCCcCchhhHHHHHHHHHHhcchhhhhhHh
Confidence 556666778888999999999999994221111122 234566667777 67779999999999999876554322222
Q ss_pred H--cCChHHHHHhhccCChHHHHHHHH-HHHHHhcCChhhHHHHHhcCChHHHHHHhcC------CCHHHHHHHHHHHHH
Q 005044 289 A--AGALQPVIGLLSSCCSESQREAAL-LLGQFAATDSDCKVHIVQRGAVRPLIEMLQS------PDVQLREMSAFALGR 359 (717)
Q Consensus 289 ~--~g~l~~L~~ll~~~~~~~~~~a~~-~L~~l~~~~~~~~~~l~~~~~l~~L~~~l~~------~~~~v~~~a~~~L~~ 359 (717)
. .+.+..|+.+.+.-+.+....+.. .++..+..-......+. .++.....+++.. .+.+-..+|.++|..
T Consensus 543 ~hvp~~mq~lL~L~ne~End~Lt~vme~iV~~fseElsPfA~eL~-q~La~~F~k~l~~~~~~~~~~ddk~iaA~GiL~T 621 (1010)
T KOG1991|consen 543 AHVPPIMQELLKLSNEVENDDLTNVMEKIVCKFSEELSPFAVELC-QNLAETFLKVLQTSEDEDESDDDKAIAASGILRT 621 (1010)
T ss_pred hhhhHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHhhchhHHHHH-HHHHHHHHHHHhccCCCCccchHHHHHHHHHHHH
Confidence 1 233444455554433332222222 22333211111111121 2344555555552 122333445555554
Q ss_pred hhc---CCCCchhhHh---cCChHHHHHhhcCCChhHHHHHHHHHHhcc
Q 005044 360 LAQ---DMHNQAGIAH---NGGLVPLLKLLDSKNGSLQHNAAFALYGLA 402 (717)
Q Consensus 360 l~~---~~~~~~~l~~---~~~l~~L~~ll~~~~~~v~~~a~~~L~~l~ 402 (717)
+.. .-++...+.. ...++.+-.++.+.-.++-+.++..+.++.
T Consensus 622 i~Til~s~e~~p~vl~~le~~~l~vi~~iL~~~i~dfyeE~~ei~~~~t 670 (1010)
T KOG1991|consen 622 ISTILLSLENHPEVLKQLEPIVLPVIGFILKNDITDFYEELLEIVSSLT 670 (1010)
T ss_pred HHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhhhh
Confidence 442 2222332222 122333334445555566666666666553
No 171
>PF04078 Rcd1: Cell differentiation family, Rcd1-like ; InterPro: IPR007216 Rcd1 (Required cell differentiation 1) -like proteins are found among a wide range of organisms []. Rcd1 was initially identified as an essential factor in nitrogen starvation-invoked differentiation in fission yeast. This results largely from a defect in nitrogen starvation-invoked induction of ste11+, a key transcriptional factor gene required for the onset of sexual development. It is one of the most conserved proteins in eukaryotes, and its mammalian homologue is expressed in a variety of differentiating tissues [, ]. The mammalian Rcd1 is a novel transcriptional cofactor and is critical for retinoic acid-induced differentiation of F9 mouse teratocarcinoma cells, at least in part, via forming complexes with retinoic acid receptor and activation transcription factor-2 (ATF-2) []. Two of the members in this family have been characterised as being involved in regulation of Ste11 regulated sex genes [, ].; PDB: 2FV2_B.
Probab=96.66 E-value=0.051 Score=51.24 Aligned_cols=176 Identities=14% Similarity=0.160 Sum_probs=118.8
Q ss_pred HHHHHHHHHHhhcChhhHHHHHhCCChHHHHHhhcCCCCCccccCCCccchHHHhHHHHHHHHhc--CChhhHHHHHhCC
Q 005044 80 AKRATHVLAELAKNEEVVNWIVEGGAVPALVKHLQAPPTSEADRNLKPFEHEVEKGSAFALGLLA--VKPEHQQLIVDNG 157 (717)
Q Consensus 80 ~~~a~~~L~~l~~~~~~~~~~~~~g~i~~L~~lL~~~~~~~~~~~~~~~~~~v~~~a~~~L~~l~--~~~~~~~~~~~~~ 157 (717)
...|+..|..++.+|+.|..++++...-.|...|+..+.... -+.+|..++.+++.+. ++++.-..+...+
T Consensus 67 VcnaLaLlQ~vAshpetr~~Fl~a~iplyLyPfL~tt~k~r~-------~E~LRLtsLGVIgaLvK~d~~evi~fLl~tE 139 (262)
T PF04078_consen 67 VCNALALLQCVASHPETRMPFLKAHIPLYLYPFLNTTSKTRP-------FEYLRLTSLGVIGALVKTDDPEVISFLLQTE 139 (262)
T ss_dssp HHHHHHHHHHHHH-TTTHHHHHHTTGGGGGHHHHH----SHH-------HHHHHHHHHHHHHHHHTT--HHHHHHHHCTT
T ss_pred HHHHHHHHHHHHcChHHHHHHHHcCchhhehhhhhccccccc-------cchhhHhHHHHHHHHHcCCcHHHHHHHHhhc
Confidence 677888888899999999999999999999999988766321 1278999999999999 7888888999999
Q ss_pred ChHHHHHHHhccccCCCccchhHHHHHHHHHHHHHhhcCchhhh------HHH-hcCCcHHHH-HhhcCCCHHHHHHHHH
Q 005044 158 ALSHLVNLLKRHMDSNCSRAVNSVIRRAADAITNLAHENSSIKT------RVR-MEGGIPPLV-ELLEFTDTKVQRAAAG 229 (717)
Q Consensus 158 ~i~~L~~lL~~~~~~~~~~~~~~~~~~a~~~L~~l~~~~~~~~~------~~~-~~~~i~~L~-~ll~~~~~~v~~~a~~ 229 (717)
.+|..++.++.... -.+..|..++..+..++..... .+. -..++..++ .+.+.+++.+.+...+
T Consensus 140 iiplcLr~me~Gse--------lSKtvAtfIlqKIL~dd~GL~yiC~t~eRf~av~~vL~~mV~~l~~~pS~RLLKhIIr 211 (262)
T PF04078_consen 140 IIPLCLRIMEFGSE--------LSKTVATFILQKILLDDVGLNYICQTAERFFAVAMVLNKMVEQLVKQPSPRLLKHIIR 211 (262)
T ss_dssp HHHHHHHHHHHS-H--------HHHHHHHHHHHHHHHSHHHHHHHTSSHHHHHHHHHHHHHHHHHHHHS--HHHHHHHHH
T ss_pred hHHHHHHHHHhccH--------HHHHHHHHHHHHHHcchhHHHHHhcCHHHHHHHHHHHHHHHHHHccCCChhHHHHHHH
Confidence 99999999987654 5666788888777764433221 111 112233333 3456789999999999
Q ss_pred HHHHhhccChhhHHHHHhcCCHHHHHHHHc--------CCCHHHHHHHHHHHHHh
Q 005044 230 ALRTLAFKNDENKNQIVECNALPTLILMLR--------SEDSAIHYEAVGVIGNL 276 (717)
Q Consensus 230 ~L~~L~~~~~~~~~~~~~~g~i~~L~~ll~--------~~~~~v~~~a~~~L~~l 276 (717)
+-..|+. ++..+..+... +| ..|+ .+|+.++..-...+.|+
T Consensus 212 CYlRLsd-nprar~aL~~~--LP---~~Lrd~~f~~~l~~D~~~k~~l~qLl~nl 260 (262)
T PF04078_consen 212 CYLRLSD-NPRAREALRQC--LP---DQLRDGTFSNILKDDPSTKRWLQQLLSNL 260 (262)
T ss_dssp HHHHHTT-STTHHHHHHHH--S----GGGTSSTTTTGGCS-HHHHHHHHHHHHHT
T ss_pred HHHHHcc-CHHHHHHHHHh--Cc---HHHhcHHHHHHHhcCHHHHHHHHHHHHHh
Confidence 9999996 67766666542 22 2232 23677777766666665
No 172
>KOG3036 consensus Protein involved in cell differentiation/sexual development [General function prediction only]
Probab=96.66 E-value=0.3 Score=45.24 Aligned_cols=147 Identities=12% Similarity=0.089 Sum_probs=101.4
Q ss_pred HHHHHHHHHHHHhhcCchhhhHHHhcCCcHHHHHhhcC-----CCHHHHHHHHHHHHHhhccCh-hhHHHHHhcCCHHHH
Q 005044 181 VIRRAADAITNLAHENSSIKTRVRMEGGIPPLVELLEF-----TDTKVQRAAAGALRTLAFKND-ENKNQIVECNALPTL 254 (717)
Q Consensus 181 ~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~-----~~~~v~~~a~~~L~~L~~~~~-~~~~~~~~~g~i~~L 254 (717)
=...++..|..++. +++.+..|....+--.+-.+|.. +..-+|..+++++..|...++ +....+...+++|..
T Consensus 95 RVcnaL~LlQcvAS-HpdTr~~FL~A~iPlylYpfL~Tt~~~r~fEyLRLtsLGVIgaLvk~dd~eVi~fLl~TeIVPlC 173 (293)
T KOG3036|consen 95 RVCNALALLQCVAS-HPDTRRAFLRAHIPLYLYPFLNTTSKSRPFEYLRLTSLGVIGALVKNDDQEVIRFLLTTEIVPLC 173 (293)
T ss_pred hHHHHHHHHHHHhc-CcchHHHHHHccChhhhHHhhhccccCCchHHHhHHHHHHHHHHHhcCcHHHHHHHHHhhhHHHH
Confidence 33456666666666 88888888887765555556632 457799999999999987444 445556788999999
Q ss_pred HHHHcCCCHHHHHHHHHHHHHhhcCChHH---HH---HHHH-cCCh-HHHHHhhccCChHHHHHHHHHHHHHhcCChhhH
Q 005044 255 ILMLRSEDSAIHYEAVGVIGNLVHSSPNI---KK---EVLA-AGAL-QPVIGLLSSCCSESQREAALLLGQFAATDSDCK 326 (717)
Q Consensus 255 ~~ll~~~~~~v~~~a~~~L~~l~~~~~~~---~~---~~~~-~g~l-~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~ 326 (717)
++.+..+++..+..|..++..+..++... ++ .+.. .-.+ +.+.++.+.++..+.+.+..+..+++ +++..+
T Consensus 174 Lrime~GSelSKtvA~fIlqKIlldD~GL~YiCqt~eRF~av~~~L~kmv~~l~~~ps~RllKhviRcYlrLs-dnprar 252 (293)
T KOG3036|consen 174 LRIMESGSELSKTVATFILQKILLDDVGLYYICQTAERFSAVALVLGKMVFQLVSMPSPRLLKHVIRCYLRLS-DNPRAR 252 (293)
T ss_pred HHHHhcccHHHHHHHHHHHHHHhhccccHHHHHHhHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhc-CCHHHH
Confidence 99999999999999999998887654322 11 1111 1112 23344556677888888888888885 556555
Q ss_pred HHH
Q 005044 327 VHI 329 (717)
Q Consensus 327 ~~l 329 (717)
..+
T Consensus 253 ~aL 255 (293)
T KOG3036|consen 253 AAL 255 (293)
T ss_pred HHH
Confidence 544
No 173
>PF12460 MMS19_C: RNAPII transcription regulator C-terminal; InterPro: IPR024687 This domain, approximately 60 amino acids in length, is found in the N-terminal region of MMS19 proteins. MMS19 is required for both nucleotide excision repair (NER) and RNA polymerase II (RNAP II) transcription [].
Probab=96.64 E-value=0.72 Score=48.71 Aligned_cols=338 Identities=17% Similarity=0.129 Sum_probs=178.8
Q ss_pred HHHHHHHHHHHhhcChhhHHHHHhCCChHHHHHhhcCCCCCccccCCCccchHHHhHHHHHHHHhc-CChhh-----HHH
Q 005044 79 AAKRATHVLAELAKNEEVVNWIVEGGAVPALVKHLQAPPTSEADRNLKPFEHEVEKGSAFALGLLA-VKPEH-----QQL 152 (717)
Q Consensus 79 ~~~~a~~~L~~l~~~~~~~~~~~~~g~i~~L~~lL~~~~~~~~~~~~~~~~~~v~~~a~~~L~~l~-~~~~~-----~~~ 152 (717)
.....+.+|..++.++.....+.. ..+..|-..++... +.+....++.+|.++. ...+. ...
T Consensus 18 ~~~~~L~~l~~ls~~~~i~~~~~~-~ll~kl~~~~~~~~-----------~~~~~~~il~tl~~~~~~~~~~~~~~~~~~ 85 (415)
T PF12460_consen 18 NYERILEALAALSTSPQILETLSI-RLLNKLSIVCQSES-----------SSDYCHAILSTLQSLLEKKQEDKQFEDNSW 85 (415)
T ss_pred HHHHHHHHHHHHHCChhHHHHHHH-HHHHHHHHHhcCCC-----------ChHHHHHHHHHHHHHHHhcccccccchHHH
Confidence 467888899999887765555432 33333333333222 1266677788887776 22111 122
Q ss_pred HHhCCChHHHHHHHhccccCCCccchhHHHHHHHHHHHHHhhcCchhhhHHHhcCCcHHHHHhhc----------C----
Q 005044 153 IVDNGALSHLVNLLKRHMDSNCSRAVNSVIRRAADAITNLAHENSSIKTRVRMEGGIPPLVELLE----------F---- 218 (717)
Q Consensus 153 ~~~~~~i~~L~~lL~~~~~~~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~----------~---- 218 (717)
..+...++.+.+..-........ ....+...+..++..++..-+..++.-. +..+..+.. .
T Consensus 86 y~~~~lv~~l~~~~~~~~~~~~~-~~~~~L~~~~~l~~~iv~~l~~~~q~~~----~~~~~~lf~~~~~~~~~~~~~~~~ 160 (415)
T PF12460_consen 86 YFHRILVPRLFELALQASDQSSD-LDDRVLELLSRLINLIVRSLSPEKQQEI----LDELYSLFLSPKSFSPFQPSSSTI 160 (415)
T ss_pred HHHhHHHHHHHHHHHhhcccccc-cchHHHHHHHHHHHHHHHhCCHHHHHHH----HHHHHHHHccccccCCCCcccccc
Confidence 23334677777766544322211 1125666666666666654443332211 222222221 0
Q ss_pred --CCHHHHHHHHHHHHHhhccChhhHHHHHhcCCHHHHHHHHc-CCCHHHHHHHHHHHHHhhcCChHHHHHHHHcCChHH
Q 005044 219 --TDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLR-SEDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQP 295 (717)
Q Consensus 219 --~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~g~i~~L~~ll~-~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~l~~ 295 (717)
...........++..+-.+..-. .. ...+..++.+.. .+++..+..++.+++.++-.-+.. . .-...+..
T Consensus 161 ~~~~~~~~~l~~~il~~l~~~~~~~--~~--~~ll~~l~~~~~~~~~~~~~~~~~~~la~LvNK~~~~-~--~l~~~l~~ 233 (415)
T PF12460_consen 161 SEQQSRLVILFSAILCSLRKDVSLP--DL--EELLQSLLNLALSSEDEFSRLAALQLLASLVNKWPDD-D--DLDEFLDS 233 (415)
T ss_pred ccccccHHHHHHHHHHcCCcccCcc--CH--HHHHHHHHHHHHcCCChHHHHHHHHHHHHHHcCCCCh-h--hHHHHHHH
Confidence 11122233334444443211100 11 125566666654 456788888999888886441111 1 00122333
Q ss_pred HHHhh-ccCChHHH----HHHHHHHHHHhcCChhhHHHHHhcCChHHHHHHhcCCCHHHHHHHHHHHHHhhcCCC-----
Q 005044 296 VIGLL-SSCCSESQ----REAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQSPDVQLREMSAFALGRLAQDMH----- 365 (717)
Q Consensus 296 L~~ll-~~~~~~~~----~~a~~~L~~l~~~~~~~~~~l~~~~~l~~L~~~l~~~~~~v~~~a~~~L~~l~~~~~----- 365 (717)
+...+ .......+ ...+|+...+........ ...+..|++++.+ +.+...++.++.-+..+.+
T Consensus 234 ~~~~~~~~~~~~~~~~~~~~~~Wi~KaLv~R~~~~~-----~~~~~~L~~lL~~--~~~g~~aA~~f~il~~d~~~~l~~ 306 (415)
T PF12460_consen 234 LLQSISSSEDSELRPQALEILIWITKALVMRGHPLA-----TELLDKLLELLSS--PELGQQAAKAFGILLSDSDDVLNK 306 (415)
T ss_pred HHhhhcccCCcchhHHHHHHHHHHHHHHHHcCCchH-----HHHHHHHHHHhCC--hhhHHHHHHHHhhHhcCcHHhcCc
Confidence 33333 22222223 333344444433222221 1245668888876 6677788888888886521
Q ss_pred ----CchhhHhcC----ChHHHHHhhcCCChhHHHHHHHHHHhccCCCcchHHHHHhcCccccccchhHHhhhHHHHHHH
Q 005044 366 ----NQAGIAHNG----GLVPLLKLLDSKNGSLQHNAAFALYGLADNEDNVADFIRVGGVQKLQDGEFIVQATKDCVAKT 437 (717)
Q Consensus 366 ----~~~~l~~~~----~l~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~l~~~~~i~~L~~~~~~~~~~~~~~~~~ 437 (717)
+-+.+.+.. .++.|++..+..+...+...+.+|.++..+.+....+-+
T Consensus 307 ~~~a~vklLykQR~F~~~~p~L~~~~~~~~~~~k~~yL~ALs~ll~~vP~~vl~~~------------------------ 362 (415)
T PF12460_consen 307 ENHANVKLLYKQRFFTQVLPKLLEGFKEADDEIKSNYLTALSHLLKNVPKSVLLPE------------------------ 362 (415)
T ss_pred cccchhhhHHhHHHHHHHHHHHHHHHhhcChhhHHHHHHHHHHHHhhCCHHHHHHH------------------------
Confidence 112233333 355566666666666888888888888765442111111
Q ss_pred HHHHHHHhhhchHHHHHHHHhhcchhHHHHHHHHHHhccCCC
Q 005044 438 LKRLEEKIHGRVLNHLLYLMRVAEKGVQRRVALALAHLCSPD 479 (717)
Q Consensus 438 ~~~l~~~~~~~~~~~L~~ll~~~~~~v~~~a~~aL~~l~~~~ 479 (717)
-..++|-|++-|..++++++..++.+|..+....
T Consensus 363 --------l~~LlPLLlqsL~~~~~~v~~s~L~tL~~~l~~~ 396 (415)
T PF12460_consen 363 --------LPTLLPLLLQSLSLPDADVLLSSLETLKMILEEA 396 (415)
T ss_pred --------HHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHcC
Confidence 1237888899999999999999999999887665
No 174
>KOG1058 consensus Vesicle coat complex COPI, beta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.60 E-value=0.39 Score=51.73 Aligned_cols=235 Identities=14% Similarity=0.180 Sum_probs=144.8
Q ss_pred HHHHHHHHHHhhc-ChhhHHHHHhCCChHHHHHhhcCCCCCccccCCCccchHHHhHHHHHHHHhcCChhhHHHHHhCCC
Q 005044 80 AKRATHVLAELAK-NEEVVNWIVEGGAVPALVKHLQAPPTSEADRNLKPFEHEVEKGSAFALGLLAVKPEHQQLIVDNGA 158 (717)
Q Consensus 80 ~~~a~~~L~~l~~-~~~~~~~~~~~g~i~~L~~lL~~~~~~~~~~~~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~ 158 (717)
+..-+..+...+. +|..+.. -+..+..+|.++++ .|+-.|+.+|.+++..|..-+..
T Consensus 223 qlViVE~Irkv~~~~p~~~~~-----~i~~i~~lL~stss------------aV~fEaa~tlv~lS~~p~alk~A----- 280 (948)
T KOG1058|consen 223 QLVIVELIRKVCLANPAEKAR-----YIRCIYNLLSSTSS------------AVIFEAAGTLVTLSNDPTALKAA----- 280 (948)
T ss_pred HHHHHHHHHHHHhcCHHHhhH-----HHHHHHHHHhcCCc------------hhhhhhcceEEEccCCHHHHHHH-----
Confidence 3444444444444 3333332 35677888888766 88888999998888776653332
Q ss_pred hHHHHHHHhccccCCCccchhHHHHHHHHHHHHHhhcCchhhhHHHhcCCcHHHHHhhcCCCHHHHHHHHHHHHHhhccC
Q 005044 159 LSHLVNLLKRHMDSNCSRAVNSVIRRAADAITNLAHENSSIKTRVRMEGGIPPLVELLEFTDTKVQRAAAGALRTLAFKN 238 (717)
Q Consensus 159 i~~L~~lL~~~~~~~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~L~~~~ 238 (717)
...++.++.+..+. .+....+.-|..+.. .++.. -.|.+-.++++|.+++-+++..++.....|+..
T Consensus 281 a~~~i~l~~kesdn-------nvklIvldrl~~l~~---~~~~i--l~~l~mDvLrvLss~dldvr~Ktldi~ldLvss- 347 (948)
T KOG1058|consen 281 ASTYIDLLVKESDN-------NVKLIVLDRLSELKA---LHEKI--LQGLIMDVLRVLSSPDLDVRSKTLDIALDLVSS- 347 (948)
T ss_pred HHHHHHHHHhccCc-------chhhhhHHHHHHHhh---hhHHH--HHHHHHHHHHHcCcccccHHHHHHHHHHhhhhh-
Confidence 34566666544332 444444444444442 22222 235566778889999999999999998888852
Q ss_pred hhhHHHHHhcCCHHHHHH-HHc------CCCHHHHHHHHHHHHHhhcCChHHHHHHHHcCChHHHHHhhccCChHHHHHH
Q 005044 239 DENKNQIVECNALPTLIL-MLR------SEDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLSSCCSESQREA 311 (717)
Q Consensus 239 ~~~~~~~~~~g~i~~L~~-ll~------~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~l~~L~~ll~~~~~~~~~~a 311 (717)
.+...++ ..|-+ +.+ +.+..-|+..+.++...+..-++.. +.+++.+++.+.+.++......
T Consensus 348 -rNvediv-----~~Lkke~~kT~~~e~d~~~~yRqlLiktih~cav~Fp~~a-----atvV~~ll~fisD~N~~aas~v 416 (948)
T KOG1058|consen 348 -RNVEDIV-----QFLKKEVMKTHNEESDDNGKYRQLLIKTIHACAVKFPEVA-----ATVVSLLLDFISDSNEAAASDV 416 (948)
T ss_pred -ccHHHHH-----HHHHHHHHhccccccccchHHHHHHHHHHHHHhhcChHHH-----HHHHHHHHHHhccCCHHHHHHH
Confidence 2222222 11111 111 2234668889999999987766653 3468899999999888766666
Q ss_pred HHHHHHHhcCChhhHHHHHhcCChHHHHHHhcC-CCHHHHHHHHHHHHHhhcCCC
Q 005044 312 ALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQS-PDVQLREMSAFALGRLAQDMH 365 (717)
Q Consensus 312 ~~~L~~l~~~~~~~~~~l~~~~~l~~L~~~l~~-~~~~v~~~a~~~L~~l~~~~~ 365 (717)
+..+.......+..+.. ++..++..+.. ....+...++|.++.-|....
T Consensus 417 l~FvrE~iek~p~Lr~~-----ii~~l~~~~~~irS~ki~rgalwi~GeYce~~~ 466 (948)
T KOG1058|consen 417 LMFVREAIEKFPNLRAS-----IIEKLLETFPQIRSSKICRGALWILGEYCEGLS 466 (948)
T ss_pred HHHHHHHHHhCchHHHH-----HHHHHHHhhhhhcccccchhHHHHHHHHHhhhH
Confidence 66666655444544443 34555555533 466777888999888876543
No 175
>PF12755 Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region
Probab=96.60 E-value=0.016 Score=46.34 Aligned_cols=89 Identities=15% Similarity=0.188 Sum_probs=60.3
Q ss_pred HHHHHHHHHHhhcCchhhhHHHhcCCcHHHHHhhcCCCHHHHHHHHHHHHHhhccChhhHHHHH--hcCCHHHHHHHHcC
Q 005044 183 RRAADAITNLAHENSSIKTRVRMEGGIPPLVELLEFTDTKVQRAAAGALRTLAFKNDENKNQIV--ECNALPTLILMLRS 260 (717)
Q Consensus 183 ~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~--~~g~i~~L~~ll~~ 260 (717)
..++.+|...+..-...- .-.-..++++++..+.+++++||..||.+|.+++.... ..+. -..+++.|.+++.+
T Consensus 4 ~ggli~Laa~ai~l~~~~-~~~l~~Il~pVL~~~~D~d~rVRy~AcEaL~ni~k~~~---~~~l~~f~~IF~~L~kl~~D 79 (97)
T PF12755_consen 4 KGGLIGLAAVAIALGKDI-SKYLDEILPPVLKCFDDQDSRVRYYACEALYNISKVAR---GEILPYFNEIFDALCKLSAD 79 (97)
T ss_pred hHHHHHHHHHHHHchHhH-HHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHcC
Confidence 345555655554333221 11223578899999999999999999999999986322 2222 24578889999999
Q ss_pred CCHHHHHHHHHHHHHh
Q 005044 261 EDSAIHYEAVGVIGNL 276 (717)
Q Consensus 261 ~~~~v~~~a~~~L~~l 276 (717)
.++.|+..| ..|-++
T Consensus 80 ~d~~Vr~~a-~~Ld~l 94 (97)
T PF12755_consen 80 PDENVRSAA-ELLDRL 94 (97)
T ss_pred CchhHHHHH-HHHHHH
Confidence 999988766 555444
No 176
>PF12717 Cnd1: non-SMC mitotic condensation complex subunit 1
Probab=96.53 E-value=0.17 Score=46.15 Aligned_cols=93 Identities=17% Similarity=0.247 Sum_probs=74.3
Q ss_pred CHHHHHHHHHHHHHhhcCChHHHHHHHHcCChHHHHHhhccCChHHHHHHHHHHHHHhcCChhhHHHHHhcCChHHHHHH
Q 005044 262 DSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLSSCCSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEM 341 (717)
Q Consensus 262 ~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~l~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~l~~~~~l~~L~~~ 341 (717)
++.+|..++.+++.++...+... ...++.+...|.++++.+|+.|+.+|..|...+-.. .+..++..++..
T Consensus 1 ~~~vR~n~i~~l~DL~~r~~~~v-----e~~~~~l~~~L~D~~~~VR~~al~~Ls~Li~~d~ik----~k~~l~~~~l~~ 71 (178)
T PF12717_consen 1 DPSVRNNAIIALGDLCIRYPNLV-----EPYLPNLYKCLRDEDPLVRKTALLVLSHLILEDMIK----VKGQLFSRILKL 71 (178)
T ss_pred CHHHHHHHHHHHHHHHHhCcHHH-----HhHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCcee----ehhhhhHHHHHH
Confidence 57899999999999987766543 335889999999999999999999999997543111 112234778888
Q ss_pred hcCCCHHHHHHHHHHHHHhhcC
Q 005044 342 LQSPDVQLREMSAFALGRLAQD 363 (717)
Q Consensus 342 l~~~~~~v~~~a~~~L~~l~~~ 363 (717)
+.++++.++..|..++..+...
T Consensus 72 l~D~~~~Ir~~A~~~~~e~~~~ 93 (178)
T PF12717_consen 72 LVDENPEIRSLARSFFSELLKK 93 (178)
T ss_pred HcCCCHHHHHHHHHHHHHHHHh
Confidence 8999999999999999999875
No 177
>PF06025 DUF913: Domain of Unknown Function (DUF913); InterPro: IPR010314 This is a domain of unknown function found towards the N terminus of a family of E3 ubiquitin protein ligases, including yeast TOM1, many of which appear to play a role in mRNA transcription and processing. This domain is found in association with and immediately C-terminal to another domain of unknown function: IPR010309 from INTERPRO.
Probab=96.53 E-value=0.56 Score=48.33 Aligned_cols=195 Identities=10% Similarity=0.120 Sum_probs=123.4
Q ss_pred HHHHHHHHhc-CChhhHHHHHhCCChHHHHHHHhcccc---C---------C---Cc--c---------chhHHHHHHHH
Q 005044 135 GSAFALGLLA-VKPEHQQLIVDNGALSHLVNLLKRHMD---S---------N---CS--R---------AVNSVIRRAAD 187 (717)
Q Consensus 135 ~a~~~L~~l~-~~~~~~~~~~~~~~i~~L~~lL~~~~~---~---------~---~~--~---------~~~~~~~~a~~ 187 (717)
.|+..|-.+. ..+..-..+...+++..+++.++..-. . . .. . ....+.+..+.
T Consensus 3 ~av~~ld~~~~~~~~a~~~f~~~~G~~~li~rl~~Ev~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~r~~llK~lLk 82 (379)
T PF06025_consen 3 RAVRFLDTFIDSSPDAFAAFRNLNGLDILIDRLQYEVDFALEENKNEEAGSGIPPEYKESSVDGYSISYQRQQLLKSLLK 82 (379)
T ss_pred HHHHHHHHHHhccHHHHHHHHhCCCHHHHHHHHHHHHHHHHhcccccCCCCCCCCCcccccccccccCHHHHHHHHHHHH
Confidence 4556666666 555556677788888888887753210 0 0 00 0 00133444455
Q ss_pred HHHHHhhcCchhh---hHHHh-cCCcHHHHHhhcCC---CHHHHHHHHHHHHHhhccChhhHHHHHhcCCHHHHHHHHc-
Q 005044 188 AITNLAHENSSIK---TRVRM-EGGIPPLVELLEFT---DTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLR- 259 (717)
Q Consensus 188 ~L~~l~~~~~~~~---~~~~~-~~~i~~L~~ll~~~---~~~v~~~a~~~L~~L~~~~~~~~~~~~~~g~i~~L~~ll~- 259 (717)
.+..+........ .-+.+ ...+..|..++++. .+.+-..|+.++..+..++|.....+.+.|+++.+++.+.
T Consensus 83 ~l~~~~~~~~~~~~~lrnl~D~s~L~~sL~~Il~n~~~FG~~v~s~a~~ivs~~I~nePT~~~~l~e~Gl~~~~L~~i~~ 162 (379)
T PF06025_consen 83 FLSHAMQHSGGFGDRLRNLIDSSSLLSSLKHILENPEVFGPSVFSLAINIVSDFIHNEPTSFSILQEAGLIDAFLDAITA 162 (379)
T ss_pred HHHHHhccCCCcccccccccchhhHHHHHHHHHhCccccchHHHHHHHHHHHHHHhcCCchhHHHHHcCChHHHHHHHhc
Confidence 5555555111111 12333 33445556666654 4788999999999999989999999999999999999887
Q ss_pred C---CCHHHHHHHHHHHHHhhcCChHHHHHHHHcCChHHHHHhhccCCh-------HHHHHHHHHHHHHhcCChhhHHHH
Q 005044 260 S---EDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLSSCCS-------ESQREAALLLGQFAATDSDCKVHI 329 (717)
Q Consensus 260 ~---~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~l~~L~~ll~~~~~-------~~~~~a~~~L~~l~~~~~~~~~~l 329 (717)
. ++.++....-.+|+.+|-+ ....+.+.+.+.++.+++++.++.. +........+..|..+.+..+..+
T Consensus 163 ~~i~~s~e~l~~lP~~l~AicLN-~~Gl~~~~~~~~l~~~f~if~s~~~~~~l~~~d~a~~lG~~~DEL~RH~p~Lk~~i 241 (379)
T PF06025_consen 163 KGILPSSEVLTSLPNVLSAICLN-NRGLEKVKSSNPLDKLFEIFTSPDYVKALRRRDTASNLGNSFDELMRHHPSLKPDI 241 (379)
T ss_pred cCCCCcHHHHHHHHHHHhHHhcC-HHHHHHHHhcChHHHHHHHhCCHHHHHHhcccchHHHHHHHHHHHHccCHHHHHHH
Confidence 3 4668888888888888765 4455888888999999998876421 223333345555555555555443
Q ss_pred H
Q 005044 330 V 330 (717)
Q Consensus 330 ~ 330 (717)
+
T Consensus 242 ~ 242 (379)
T PF06025_consen 242 I 242 (379)
T ss_pred H
Confidence 3
No 178
>KOG1078 consensus Vesicle coat complex COPI, gamma subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.52 E-value=0.2 Score=54.15 Aligned_cols=65 Identities=18% Similarity=0.197 Sum_probs=48.1
Q ss_pred ChHHHHHHhcCCCHHHHHHHHHHHHHhhcCCCCchhhHhcCChHHHHHhhcCCChhHHHHHHHHHHhcc
Q 005044 334 AVRPLIEMLQSPDVQLREMSAFALGRLAQDMHNQAGIAHNGGLVPLLKLLDSKNGSLQHNAAFALYGLA 402 (717)
Q Consensus 334 ~l~~L~~~l~~~~~~v~~~a~~~L~~l~~~~~~~~~l~~~~~l~~L~~ll~~~~~~v~~~a~~~L~~l~ 402 (717)
.+..+.+.+--.+..+|.+|+.+|.++....+. ....+.-.+.+.+.+.+.+++..|...|.++-
T Consensus 467 yir~iyNRviLEn~ivRaaAv~alaKfg~~~~~----l~~sI~vllkRc~~D~DdevRdrAtf~l~~l~ 531 (865)
T KOG1078|consen 467 YIRFIYNRVILENAIVRAAAVSALAKFGAQDVV----LLPSILVLLKRCLNDSDDEVRDRATFYLKNLE 531 (865)
T ss_pred hhHHHhhhhhhhhhhhHHHHHHHHHHHhcCCCC----ccccHHHHHHHHhcCchHHHHHHHHHHHHHhh
Confidence 445555555556788999999999999843222 22334445778899999999999999999886
No 179
>PRK14707 hypothetical protein; Provisional
Probab=96.52 E-value=1.7 Score=52.63 Aligned_cols=220 Identities=18% Similarity=0.169 Sum_probs=120.0
Q ss_pred HHHHHHHhcCChhhHHHHHhCCChHHHHHHHhccccCCCccchhHHHHHHHHHHHHHhhcCchhhhHHHhcCCcHHHHHh
Q 005044 136 SAFALGLLAVKPEHQQLIVDNGALSHLVNLLKRHMDSNCSRAVNSVIRRAADAITNLAHENSSIKTRVRMEGGIPPLVEL 215 (717)
Q Consensus 136 a~~~L~~l~~~~~~~~~~~~~~~i~~L~~lL~~~~~~~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~l 215 (717)
+..+-..+++.+..+..+-..+ +.-.++-|+...+. .+...++..|..-..+++..+..+-..++-..|-.+
T Consensus 269 ~~~lA~rl~~~~~l~~al~~q~-vanalNalSKwpd~-------~vc~~Aa~~la~rl~~d~~l~~~~~~~~~~~~LNal 340 (2710)
T PRK14707 269 ASALAERLVDDPGLRKALDPIN-VTQALNALSKWADL-------PVCAEAAIALAERLADDPELCKALNARGLSTALNAL 340 (2710)
T ss_pred HHHHHHHHhhhHHHHHhcCHHH-HHHHHhhhhcCCCc-------hHHHHHHHHHHHHHhccHhhhhccchHHHHHHHHHh
Confidence 3333334445555554444333 33444445544332 555555555544333466655444333333333334
Q ss_pred hcCCCHHHHHHHHHHHHHhhccChhhHHHHHhcCCHHHHHHHH-cCCCHHHHHHHHHHHHHhhcCChHHHHHHHHcCChH
Q 005044 216 LEFTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILML-RSEDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQ 294 (717)
Q Consensus 216 l~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~g~i~~L~~ll-~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~l~ 294 (717)
-+-++..+-..|..+|..=..++++.++.+--.| +...+..+ +=++..+...++..|..=...+.+.+..+-..|+-.
T Consensus 341 sKWpd~~~C~~Aa~~LA~rl~~d~~l~~~l~~q~-~a~~lNalsKWp~~~~c~~aa~~LA~~l~~d~~l~~~~~~Q~van 419 (2710)
T PRK14707 341 SKWPDNPVCAAAVSALAERLVADPELRKDLEPQG-VSSVLNALSKWPDTPVCAAAASALAEHVVDDLELRKGLDPQGVSN 419 (2710)
T ss_pred hcCCCchhHHHHHHHHHHHhccCHhhhcccchhH-HHHHHhhhhcCCCchHHHHHHHHHHHHhccChhhhhhcchhhHHH
Confidence 4556655555555555544434666666555444 44444444 446777777777777766667777777766666666
Q ss_pred HHHHhhccCChHHHHHHHHHHHHHhcCChhhHHHHHhcCChHHHHHHhc-CCCHHHHHHHHHHHH-HhhcCCC
Q 005044 295 PVIGLLSSCCSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQ-SPDVQLREMSAFALG-RLAQDMH 365 (717)
Q Consensus 295 ~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~l~~~~~l~~L~~~l~-~~~~~v~~~a~~~L~-~l~~~~~ 365 (717)
.|-.+-+=++..+...++..|..-..++.+.+..+--.++. ..++.+. =++..+...++..|. .|+....
T Consensus 420 ~lnalsKWPd~~~C~~aa~~lA~~la~d~~l~~~~~p~~va-~~LnalSKWPd~p~c~~aa~~La~~l~~~~~ 491 (2710)
T PRK14707 420 ALNALAKWPDLPICGQAVSALAGRLAHDTELCKALDPINVT-QALDALSKWPDTPICGQTASALAARLAHERR 491 (2710)
T ss_pred HHHHhhcCCcchhHHHHHHHHHHHHhccHHHHhhcChHHHH-HHHHHhhcCCCChhHHHHHHHHHHHhcccHH
Confidence 65555555677788888887776656666666555434433 3444443 366666655555544 3554443
No 180
>PF12755 Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region
Probab=96.48 E-value=0.015 Score=46.49 Aligned_cols=88 Identities=14% Similarity=0.127 Sum_probs=59.8
Q ss_pred HHHHHHHHHHHhcCChhhHHHHHhcCChHHHHHHhcCCCHHHHHHHHHHHHHhhcCCCCchhhHhcCChHHHHHhhcCCC
Q 005044 308 QREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQSPDVQLREMSAFALGRLAQDMHNQAGIAHNGGLVPLLKLLDSKN 387 (717)
Q Consensus 308 ~~~a~~~L~~l~~~~~~~~~~l~~~~~l~~L~~~l~~~~~~v~~~a~~~L~~l~~~~~~~~~l~~~~~l~~L~~ll~~~~ 387 (717)
|+.++.+|..++..-+....... ..++++++..+.++++.||..|+.+|.|++..........-......|.+++.+.+
T Consensus 3 R~ggli~Laa~ai~l~~~~~~~l-~~Il~pVL~~~~D~d~rVRy~AcEaL~ni~k~~~~~~l~~f~~IF~~L~kl~~D~d 81 (97)
T PF12755_consen 3 RKGGLIGLAAVAIALGKDISKYL-DEILPPVLKCFDDQDSRVRYYACEALYNISKVARGEILPYFNEIFDALCKLSADPD 81 (97)
T ss_pred hhHHHHHHHHHHHHchHhHHHHH-HHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCc
Confidence 44555666666533333322222 44789999999999999999999999999975433222222355667888889999
Q ss_pred hhHHHHHHH
Q 005044 388 GSLQHNAAF 396 (717)
Q Consensus 388 ~~v~~~a~~ 396 (717)
+.|+..|..
T Consensus 82 ~~Vr~~a~~ 90 (97)
T PF12755_consen 82 ENVRSAAEL 90 (97)
T ss_pred hhHHHHHHH
Confidence 998776643
No 181
>PF11822 DUF3342: Domain of unknown function (DUF3342); InterPro: IPR021777 This family of proteins are functionally uncharacterised. This family is found in bacteria. This presumed domain is typically between 170 to 303 amino acids in length. The N-terminal half of this family is a BTB-like domain.
Probab=96.47 E-value=0.0086 Score=57.98 Aligned_cols=89 Identities=18% Similarity=0.268 Sum_probs=74.9
Q ss_pred eEeehhHHHHhhccHHHHHhhcCCCCCC-CCcceEcC-CCCHHHHHHHHHHHhcCccccchhhHHHHHHHHHhhChHhHH
Q 005044 559 RRFYAHRICLLASSDAFRAMFDGGYREK-DARDIEIP-NIRWEVFELMMRFIYTGSVDVTLDIAQDLLRAADQYLLEGLK 636 (717)
Q Consensus 559 ~~~~~h~~il~~~s~~f~~~~~~~~~e~-~~~~i~l~-~~~~~~~~~~l~~~Yt~~~~~~~~~~~~ll~~A~~~~~~~l~ 636 (717)
+.|.+.+.+|-..=.||+..+....+++ ....|+|. +.+..+|+=+++|++...-.++++|+..++.-+++++|+.|.
T Consensus 14 rdF~C~~~lL~~~M~YF~~~l~~~~~~~~~~~~idisVhCDv~iF~WLm~yv~~~~p~l~~~NvvsIliSS~FL~M~~Lv 93 (317)
T PF11822_consen 14 RDFTCPRDLLVSEMRYFAEYLSRYINDSQRWEEIDISVHCDVHIFEWLMRYVKGEPPSLTPSNVVSILISSEFLQMESLV 93 (317)
T ss_pred eeeeccHHHHHHhhHHHHHHHhhcccccCcCCCcceEEecChhHHHHHHHHhhcCCCcCCcCcEEEeEehhhhhccHHHH
Confidence 7899999999999999999996522222 12345554 578899999999999988899999999999999999999999
Q ss_pred HHHHHHHHhcC
Q 005044 637 RLCEYTIAQDI 647 (717)
Q Consensus 637 ~~c~~~l~~~i 647 (717)
+.|..|+..++
T Consensus 94 e~cl~y~~~~~ 104 (317)
T PF11822_consen 94 EECLQYCHDHM 104 (317)
T ss_pred HHHHHHHHHhH
Confidence 99999987654
No 182
>PF06025 DUF913: Domain of Unknown Function (DUF913); InterPro: IPR010314 This is a domain of unknown function found towards the N terminus of a family of E3 ubiquitin protein ligases, including yeast TOM1, many of which appear to play a role in mRNA transcription and processing. This domain is found in association with and immediately C-terminal to another domain of unknown function: IPR010309 from INTERPRO.
Probab=96.43 E-value=0.26 Score=50.76 Aligned_cols=160 Identities=13% Similarity=0.160 Sum_probs=113.3
Q ss_pred HHHHHHHhhccChhhHHHHHhcCCHHHHHHHHcCC--------------------------C--------HHHHHHHHHH
Q 005044 227 AAGALRTLAFKNDENKNQIVECNALPTLILMLRSE--------------------------D--------SAIHYEAVGV 272 (717)
Q Consensus 227 a~~~L~~L~~~~~~~~~~~~~~g~i~~L~~ll~~~--------------------------~--------~~v~~~a~~~ 272 (717)
|...|-.+....+.....+.+.+++..++..++.+ + ....+..+++
T Consensus 4 av~~ld~~~~~~~~a~~~f~~~~G~~~li~rl~~Ev~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~r~~llK~lLk~ 83 (379)
T PF06025_consen 4 AVRFLDTFIDSSPDAFAAFRNLNGLDILIDRLQYEVDFALEENKNEEAGSGIPPEYKESSVDGYSISYQRQQLLKSLLKF 83 (379)
T ss_pred HHHHHHHHHhccHHHHHHHHhCCCHHHHHHHHHHHHHHHHhcccccCCCCCCCCCcccccccccccCHHHHHHHHHHHHH
Confidence 44555555554555556666777777776655310 0 1233444555
Q ss_pred HHHhhc---CChHHHHHHHH-cCChHHHHHhhccCC---hHHHHHHHHHHHHHhcCChhhHHHHHhcCChHHHHHHhc-C
Q 005044 273 IGNLVH---SSPNIKKEVLA-AGALQPVIGLLSSCC---SESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQ-S 344 (717)
Q Consensus 273 L~~l~~---~~~~~~~~~~~-~g~l~~L~~ll~~~~---~~~~~~a~~~L~~l~~~~~~~~~~l~~~~~l~~L~~~l~-~ 344 (717)
+..+.. +.....+.+++ ..++..|...+.+.. +.+...|+.++..+..++|..-..+.+.|+++.+++.+. .
T Consensus 84 l~~~~~~~~~~~~~lrnl~D~s~L~~sL~~Il~n~~~FG~~v~s~a~~ivs~~I~nePT~~~~l~e~Gl~~~~L~~i~~~ 163 (379)
T PF06025_consen 84 LSHAMQHSGGFGDRLRNLIDSSSLLSSLKHILENPEVFGPSVFSLAINIVSDFIHNEPTSFSILQEAGLIDAFLDAITAK 163 (379)
T ss_pred HHHHhccCCCcccccccccchhhHHHHHHHHHhCccccchHHHHHHHHHHHHHHhcCCchhHHHHHcCChHHHHHHHhcc
Confidence 555554 22233344555 556777777777653 678888999999998888888889999999999999998 4
Q ss_pred ---CCHHHHHHHHHHHHHhhcCCCCchhhHhcCChHHHHHhhcCC
Q 005044 345 ---PDVQLREMSAFALGRLAQDMHNQAGIAHNGGLVPLLKLLDSK 386 (717)
Q Consensus 345 ---~~~~v~~~a~~~L~~l~~~~~~~~~l~~~~~l~~L~~ll~~~ 386 (717)
++.++....-.++..||-+......+.+.+.++.+++++.+.
T Consensus 164 ~i~~s~e~l~~lP~~l~AicLN~~Gl~~~~~~~~l~~~f~if~s~ 208 (379)
T PF06025_consen 164 GILPSSEVLTSLPNVLSAICLNNRGLEKVKSSNPLDKLFEIFTSP 208 (379)
T ss_pred CCCCcHHHHHHHHHHHhHHhcCHHHHHHHHhcChHHHHHHHhCCH
Confidence 467788888889999999988888999999999999988654
No 183
>PF11841 DUF3361: Domain of unknown function (DUF3361)
Probab=96.32 E-value=0.14 Score=44.57 Aligned_cols=128 Identities=14% Similarity=0.250 Sum_probs=96.2
Q ss_pred HHHHHhCCChHHHHHHHhcccc-CCCccchhHHHHHHHHHHHHHhhcCchhhhHHHhcCCcHHHHHhhcCC--CHHHHHH
Q 005044 150 QQLIVDNGALSHLVNLLKRHMD-SNCSRAVNSVIRRAADAITNLAHENSSIKTRVRMEGGIPPLVELLEFT--DTKVQRA 226 (717)
Q Consensus 150 ~~~~~~~~~i~~L~~lL~~~~~-~~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~--~~~v~~~ 226 (717)
...+...+|+..|++++.+... .+... ++...++.++..|..++- ..-......++..++.++..+ +..+...
T Consensus 4 A~EFI~~~Gl~~L~~~iE~g~~~~~~~~---~~La~~L~af~eLMeHg~-vsWd~l~~~FI~Kia~~Vn~~~~d~~i~q~ 79 (160)
T PF11841_consen 4 AQEFISRDGLTLLIKMIEEGTEIQPCKG---EILAYALTAFVELMEHGI-VSWDTLSDSFIKKIASYVNSSAMDASILQR 79 (160)
T ss_pred HHHHHhccCHHHHHHHHHcCCccCcchH---HHHHHHHHHHHHHHhcCc-CchhhccHHHHHHHHHHHccccccchHHHH
Confidence 3456778999999999988763 11111 777888888888887432 222334445677777777543 6889999
Q ss_pred HHHHHHHhhccChhhHHHHHhcCCHHHHHHHHcCCCHHHHHHHHHHHHHhhcCCh
Q 005044 227 AAGALRTLAFKNDENKNQIVECNALPTLILMLRSEDSAIHYEAVGVIGNLVHSSP 281 (717)
Q Consensus 227 a~~~L~~L~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~ 281 (717)
++..|-+++..++.....+.+.=-++.|+..|+.++++++..++..+-.|....+
T Consensus 80 sLaILEs~Vl~S~~ly~~V~~evt~~~Li~hLq~~~~~iq~naiaLinAL~~kA~ 134 (160)
T PF11841_consen 80 SLAILESIVLNSPKLYQLVEQEVTLESLIRHLQVSNQEIQTNAIALINALFLKAD 134 (160)
T ss_pred HHHHHHHHHhCCHHHHHHHhccCCHHHHHHHHHcCCHHHHHHHHHHHHHHHhcCC
Confidence 9999999998777767777777779999999999999999999999988865433
No 184
>PF07814 WAPL: Wings apart-like protein regulation of heterochromatin; InterPro: IPR022771 This entry contains sequences expressed in eukaryotic organisms (metazoa, fungi, plants) bearing high similarity to the WAPL conserved region of D. melanogaster wings apart-like protein. This protein is involved in the regulation of heterochromatin structure []. hWAPL (Q7Z5K2 from SWISSPROT), the human homologue, is found to play a role in the development of cervical carcinogenesis, and is thought to have similar functions to Drosophila wapl protein []. Malfunction of the hWAPL pathway is thought to activate an apoptotic pathway that consequently leads to cell death []. This entry includes proteins from metazoa, fungi and plants.
Probab=96.26 E-value=0.34 Score=49.77 Aligned_cols=289 Identities=16% Similarity=0.144 Sum_probs=149.3
Q ss_pred HHHHHHHHHHHhhhhhccccchHHHHHHHHHHHHHHHHhhcChhhHHHHHhCCChHHHHHhhcCCCCCccccCCCccchH
Q 005044 52 RQALLSEVSAQVNVLNTTFSWLEADRAAAKRATHVLAELAKNEEVVNWIVEGGAVPALVKHLQAPPTSEADRNLKPFEHE 131 (717)
Q Consensus 52 ~~~~~~~i~~l~~~L~~~~~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~g~i~~L~~lL~~~~~~~~~~~~~~~~~~ 131 (717)
...+...+..+++-|... .+..+|..++-.|+.-+.++..+..+...|....++..+.....+ +.
T Consensus 16 n~rf~Dev~ylld~l~~~-----~~~s~Rr~sll~La~K~~~~~Fr~~~ra~g~~~~l~~~l~~~~~d----------~~ 80 (361)
T PF07814_consen 16 NQRFADEVEYLLDGLESS-----SSSSVRRSSLLELASKCADPQFRRQFRAHGLVKRLFKALSDAPDD----------DI 80 (361)
T ss_pred hhhHHHHHHHHHhhcccC-----CCccHHHHHHHHHHHHhCCHHHHHHHHHcCcHHHHHHHhccccch----------HH
Confidence 334556666666666522 233468888888998888999999999999999999999665441 12
Q ss_pred HHhHHHHHHHHhcCChhhHHHHHhCCChHHHHHHHhccc--cCCCcc--chhHHHHHHHHHHHHHhhcCchhhhHHHhcC
Q 005044 132 VEKGSAFALGLLAVKPEHQQLIVDNGALSHLVNLLKRHM--DSNCSR--AVNSVIRRAADAITNLAHENSSIKTRVRMEG 207 (717)
Q Consensus 132 v~~~a~~~L~~l~~~~~~~~~~~~~~~i~~L~~lL~~~~--~~~~~~--~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~ 207 (717)
.-..++.++.-++.+......+.+.+....++.+++-.. ...... ............+...|. .....+
T Consensus 81 ~~l~~a~i~~~l~~d~~~~~l~~~~~~~~ll~~Ll~~~~~~~~~~~~~~~~~~~lsk~~~~~~~~~~-------~~~~~~ 153 (361)
T PF07814_consen 81 LALATAAILYVLSRDGLNMHLLLDRDSLRLLLKLLKVDKSLDVPSDSDSSRKKNLSKVQQKSRSLCK-------ELLSSG 153 (361)
T ss_pred HHHHHHHHHHHHccCCcchhhhhchhHHHHHHHHhccccccccccchhhhhhhhhhHHHHHHHHHHH-------HHHhcc
Confidence 233334444444433333344445566677788887111 100000 000000001111111111 000000
Q ss_pred CcHHHHHhhcCCCHHHHHHHHHHHHHhhc--------------cChhhHHHHHhcCCHHHHHHHHcC----C--------
Q 005044 208 GIPPLVELLEFTDTKVQRAAAGALRTLAF--------------KNDENKNQIVECNALPTLILMLRS----E-------- 261 (717)
Q Consensus 208 ~i~~L~~ll~~~~~~v~~~a~~~L~~L~~--------------~~~~~~~~~~~~g~i~~L~~ll~~----~-------- 261 (717)
... .--.+....-+..|+.++..++. ..+..++.+...|++..++..+.+ .
T Consensus 154 ~~~---~~~~~~~lsp~~lall~le~l~~~~~~~~~~~~t~~~~~~~fkeelr~lg~Ld~iv~~l~~~~~~~~~~~~~~~ 230 (361)
T PF07814_consen 154 SSW---KSPKPPELSPQTLALLALESLVRSLREAGDLSETSSRAGEWFKEELRELGGLDHIVDILKDCHSSLSSADAWDD 230 (361)
T ss_pred ccc---cccCCcccccccHHHHHHHHHHHHHhhcccchhhhhhccccchhhhhhHHHHHHHHHHHHHhhhhhhhhhhccc
Confidence 000 00001122233444444444421 112335566677888888888751 1
Q ss_pred ----CHHHHHHHHHHHHHhhcCChHHHHHHHHc--CChHHH-HHhhccC---ChHHHHHHHHHHHHHhcCChhhHHHHHh
Q 005044 262 ----DSAIHYEAVGVIGNLVHSSPNIKKEVLAA--GALQPV-IGLLSSC---CSESQREAALLLGQFAATDSDCKVHIVQ 331 (717)
Q Consensus 262 ----~~~v~~~a~~~L~~l~~~~~~~~~~~~~~--g~l~~L-~~ll~~~---~~~~~~~a~~~L~~l~~~~~~~~~~l~~ 331 (717)
+......++++|-+.+..++.++..+... +.+..+ ..++... .......++..+.|++.+++.....+..
T Consensus 231 ~~~~~l~~l~~cl~ILEs~T~~~~~nq~~l~~~~~~~l~~~~~~l~~~~~~~~~~~l~~~lrlllNlTn~n~~~c~~~~s 310 (361)
T PF07814_consen 231 PSLQSLIDLERCLSILESVTFLSEENQSYLLSHRSSLLPQLLSTLLRQCDDQVIQLLLLALRLLLNLTNNNPSACEEFAS 310 (361)
T ss_pred cchHHHHHHHHHHHHHHHHHhcCccchHHHHHhcccchHHHHHHHHHHHHHHHHHHHHHHHHHeeeCCCCCccchHhhhh
Confidence 11345668888888877666665555543 233322 2333322 2344567888999998777666555555
Q ss_pred cCChHHHHHHh-------c-------CCCHHHHHHHHHHHHHhhcCCC
Q 005044 332 RGAVRPLIEML-------Q-------SPDVQLREMSAFALGRLAQDMH 365 (717)
Q Consensus 332 ~~~l~~L~~~l-------~-------~~~~~v~~~a~~~L~~l~~~~~ 365 (717)
.++...+..+. . ....+...-++++|.||+...+
T Consensus 311 ~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~D~~IL~Lg~LINL~E~s~ 358 (361)
T PF07814_consen 311 PKLGQQLGLIVTSFFCVLSLPNYVPEESSFDILILALGLLINLVEHSE 358 (361)
T ss_pred hHhccchHHHHHhhcccccccccccccccchHHHHHHHhHHHheeeCc
Confidence 43333222111 1 1123566678888888887543
No 185
>KOG4151 consensus Myosin assembly protein/sexual cycle protein and related proteins [Posttranslational modification, protein turnover, chaperones; Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=96.26 E-value=0.051 Score=58.77 Aligned_cols=204 Identities=15% Similarity=0.126 Sum_probs=142.2
Q ss_pred CChhhHHHHHhCCChHHHHHHHhccccCCCccchhHHHHHHHHHHH-HHhhcCchhhhHHHhcCCcHHHHHhhcCCC-HH
Q 005044 145 VKPEHQQLIVDNGALSHLVNLLKRHMDSNCSRAVNSVIRRAADAIT-NLAHENSSIKTRVRMEGGIPPLVELLEFTD-TK 222 (717)
Q Consensus 145 ~~~~~~~~~~~~~~i~~L~~lL~~~~~~~~~~~~~~~~~~a~~~L~-~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~-~~ 222 (717)
....-+...++.|+...|+.+...... .-+.....+|. .+..... + ....++.+...+.... ..
T Consensus 492 ~~K~~~~~~Ik~~~~~aLlrl~~~q~e--------~akl~~~~aL~~~i~f~~~--~----~~~v~~~~~s~~~~d~~~~ 557 (748)
T KOG4151|consen 492 KEKYERAKKIKPGGYEALLRLGQQQFE--------EAKLKWYHALAGKIDFPGE--R----SYEVVKPLDSALHNDEKGL 557 (748)
T ss_pred hhHHhcCccccccHHHHHHHHHHHhch--------HHHHHHHHHHhhhcCCCCC--c----hhhhhhhhcchhhhhHHHH
Confidence 455556677788999999998877665 44555555555 2222111 1 1134455555443322 12
Q ss_pred HHHHHHHHHHHhhccChhhHHHHHhcCCHHHHHHHHcCCCHHHHHHHHHHHHHhhcCChHHHHHHHH-cCChHHHHHhhc
Q 005044 223 VQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSEDSAIHYEAVGVIGNLVHSSPNIKKEVLA-AGALQPVIGLLS 301 (717)
Q Consensus 223 v~~~a~~~L~~L~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~-~g~l~~L~~ll~ 301 (717)
-...++.++.||++.+...+..+.+.-.++.+-.++..+++..+..++..+.||..++......+.+ ...++.....+.
T Consensus 558 en~E~L~altnLas~s~s~r~~i~ke~~~~~ie~~~~ee~~~lqraa~e~~~NLl~~~~~~e~si~e~~~~l~~w~~~~e 637 (748)
T KOG4151|consen 558 ENFEALEALTNLASISESDRQKILKEKALGKIEELMTEENPALQRAALESIINLLWSPLLYERSIVEYKDRLKLWNLNLE 637 (748)
T ss_pred HHHHHHHHhhcccCcchhhHHHHHHHhcchhhHHHhhcccHHHHHHHHHHHHHHHhhHHHHHHHhhccccCchHHHHHHH
Confidence 2356788999999888888888888777777777888899999999999999998876666666666 456777777777
Q ss_pred cCChHHHHHHHHHHHHHhcCChhhHH-HHHhcCChHHHHHHhcCCCHHHHHHHHHHHHHhhc
Q 005044 302 SCCSESQREAALLLGQFAATDSDCKV-HIVQRGAVRPLIEMLQSPDVQLREMSAFALGRLAQ 362 (717)
Q Consensus 302 ~~~~~~~~~a~~~L~~l~~~~~~~~~-~l~~~~~l~~L~~~l~~~~~~v~~~a~~~L~~l~~ 362 (717)
........+++.++..+++....++. ...-......+..++.+.+..++...+....|+..
T Consensus 638 ~~~E~~~lA~a~a~a~I~sv~~n~c~~~~~~~~~~e~~~~~i~~~~~~~qhrgl~~~ln~~~ 699 (748)
T KOG4151|consen 638 VADEKFELAGAGALAAITSVVENHCSRILELLEWLEILVRAIQDEDDEIQHRGLVIILNLFE 699 (748)
T ss_pred hhhhHHhhhccccccchhhcchhhhhhHHHhhcchHHHHHhhcCchhhhhhhhhhhhhhHHH
Confidence 76677777777777777666555555 33345677888888999999999998888888543
No 186
>PF08045 CDC14: Cell division control protein 14, SIN component; InterPro: IPR012535 Cdc14 is a component of the septation initiation network (SIN) and is required for the localisation and activity of Sid1. Sid1 is a protein kinase that localises asymmetrically to one spindle pole body (SPB) in anaphase disappears prior to cell separation [], [].
Probab=96.17 E-value=0.13 Score=49.02 Aligned_cols=99 Identities=20% Similarity=0.271 Sum_probs=87.5
Q ss_pred HHHHHHHHHHHHHhhcCchhhhHHHhcCCcHHHHHhhcC-CCHHHHHHHHHHHHHhhccChhhHHHHHhcCCHHHHHHHH
Q 005044 180 SVIRRAADAITNLAHENSSIKTRVRMEGGIPPLVELLEF-TDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILML 258 (717)
Q Consensus 180 ~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~-~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~g~i~~L~~ll 258 (717)
.....|+.+|.-+|--++..+..+.....+..++.+|.. ..+.++..++.+|..+..+++.+.+.+-+.+++..++.++
T Consensus 106 ~li~~aL~vLQGl~LLHp~Sr~lF~r~~~m~lll~LL~~~~~~~i~~a~L~tLv~iLld~p~N~r~FE~~~Gl~~v~~ll 185 (257)
T PF08045_consen 106 SLIALALRVLQGLCLLHPPSRKLFHREQNMELLLDLLSPSNPPAIQSACLDTLVCILLDSPENQRDFEELNGLSTVCSLL 185 (257)
T ss_pred HHHHHHHHHHHHHHHcCchHHHHHhhhhhHHHHHHHhccCCCchHHHHHHHHHHHHHHcChHHHHHHHHhCCHHHHHHHH
Confidence 456778899999999999999999999999999999944 6789999999999999989999999999999999999999
Q ss_pred cCC--CHHHHHHHHHHHHHhhc
Q 005044 259 RSE--DSAIHYEAVGVIGNLVH 278 (717)
Q Consensus 259 ~~~--~~~v~~~a~~~L~~l~~ 278 (717)
++. +.+++..++..|.-...
T Consensus 186 k~~~~~~~~r~K~~EFL~fyl~ 207 (257)
T PF08045_consen 186 KSKSTDRELRLKCIEFLYFYLM 207 (257)
T ss_pred ccccccHHHhHHHHHHHHHHHc
Confidence 875 66888888888877654
No 187
>smart00512 Skp1 Found in Skp1 protein family. Family of Skp1 (kinetochore protein required for cell cycle progression) and elongin C (subunit of RNA polymerase II transcription factor SIII) homologues.
Probab=96.15 E-value=0.03 Score=45.80 Aligned_cols=75 Identities=17% Similarity=0.272 Sum_probs=54.2
Q ss_pred cCeEeehhHHHHhhccHHHHHhhcCCCCCC-CCcceEcCCCCHHHHHHHHHHHhcCccc-------------------cc
Q 005044 557 EGRRFYAHRICLLASSDAFRAMFDGGYREK-DARDIEIPNIRWEVFELMMRFIYTGSVD-------------------VT 616 (717)
Q Consensus 557 ~~~~~~~h~~il~~~s~~f~~~~~~~~~e~-~~~~i~l~~~~~~~~~~~l~~~Yt~~~~-------------------~~ 616 (717)
+|..|.+.+.+.. .|..++.|+.+.-.+. ....|++++++..+++.+++|++--.-. ++
T Consensus 10 Dg~~f~v~~~~a~-~S~~i~~~l~~~~~~~~~~~~Ipl~~v~~~~L~~Vi~yc~~h~~~~~~~~~~~~~~~wD~~F~~~d 88 (104)
T smart00512 10 DGEVFEVEREVAR-QSKTIKAMIEDLGVDDENNNPIPLPNVTSKILSKVIEYCEHHVDDPPSVADKDDIPTWDAEFLKID 88 (104)
T ss_pred CCCEEEecHHHHH-HHHHHHHHHHccCcccCCCCCccCCCcCHHHHHHHHHHHHHcccCCCCccccccccHHHHHHHcCC
Confidence 6789999999875 8999999997532221 2258999999999999999999643211 33
Q ss_pred hhhHHHHHHHHHhhCh
Q 005044 617 LDIAQDLLRAADQYLL 632 (717)
Q Consensus 617 ~~~~~~ll~~A~~~~~ 632 (717)
.+.+.+|+.+|+++++
T Consensus 89 ~~~l~dLl~AAnyL~I 104 (104)
T smart00512 89 QETLFELILAANYLDI 104 (104)
T ss_pred HHHHHHHHHHHHhhCC
Confidence 4456667777766653
No 188
>KOG2062 consensus 26S proteasome regulatory complex, subunit RPN2/PSMD1 [Posttranslational modification, protein turnover, chaperones]
Probab=96.13 E-value=0.47 Score=51.05 Aligned_cols=159 Identities=18% Similarity=0.092 Sum_probs=105.5
Q ss_pred CChHHHHHhhccCChHHHHHHHHHHHHHhcCChhhHHHHHhcCChHHHHHH-hcCCCHHHHHHHHHHHHHhhcCCCCchh
Q 005044 291 GALQPVIGLLSSCCSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEM-LQSPDVQLREMSAFALGRLAQDMHNQAG 369 (717)
Q Consensus 291 g~l~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~l~~~~~l~~L~~~-l~~~~~~v~~~a~~~L~~l~~~~~~~~~ 369 (717)
++=+.+-+++.+.++-+|.....++.---.+ ..+.+++..|+.. ..+.+.+||++|+.+|+-++..++.
T Consensus 519 ~Ad~lI~el~~dkdpilR~~Gm~t~alAy~G-------Tgnnkair~lLh~aVsD~nDDVrRaAVialGFVl~~dp~--- 588 (929)
T KOG2062|consen 519 DADPLIKELLRDKDPILRYGGMYTLALAYVG-------TGNNKAIRRLLHVAVSDVNDDVRRAAVIALGFVLFRDPE--- 588 (929)
T ss_pred hhHHHHHHHhcCCchhhhhhhHHHHHHHHhc-------cCchhhHHHhhcccccccchHHHHHHHHHheeeEecChh---
Confidence 3445566777778888887776655432111 1234567777777 5668999999999999987764433
Q ss_pred hHhcCChHHHHHhh-cCCChhHHHHHHHHHHhccCCCcchHHHHHhcCccccccchhHHhhhHHHHHHHHHHHHHHhhhc
Q 005044 370 IAHNGGLVPLLKLL-DSKNGSLQHNAAFALYGLADNEDNVADFIRVGGVQKLQDGEFIVQATKDCVAKTLKRLEEKIHGR 448 (717)
Q Consensus 370 l~~~~~l~~L~~ll-~~~~~~v~~~a~~~L~~l~~~~~~~~~l~~~~~i~~L~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 448 (717)
.++..+.+| .+-++.||..++.+|.--|.+.....
T Consensus 589 -----~~~s~V~lLses~N~HVRyGaA~ALGIaCAGtG~~e--------------------------------------- 624 (929)
T KOG2062|consen 589 -----QLPSTVSLLSESYNPHVRYGAAMALGIACAGTGLKE--------------------------------------- 624 (929)
T ss_pred -----hchHHHHHHhhhcChhhhhhHHHHHhhhhcCCCcHH---------------------------------------
Confidence 355666776 45689999999999987776655432
Q ss_pred hHHHHHHHHhhcchhHHHHHHHHHHhccC-CCC-CceeeecCCCHHHHHHHhcCCCchh
Q 005044 449 VLNHLLYLMRVAEKGVQRRVALALAHLCS-PDD-QRTIFIDGGGLELLLGLLGSTNPKQ 505 (717)
Q Consensus 449 ~~~~L~~ll~~~~~~v~~~a~~aL~~l~~-~~~-~~~~~~~~~~l~~L~~ll~~~~~~v 505 (717)
.+.-|-.+..++..-||..|+.++.-+.. ..+ .+.. -.+..+.+.+.+.+++++.
T Consensus 625 Ai~lLepl~~D~~~fVRQgAlIa~amIm~Q~t~~~~pk--v~~frk~l~kvI~dKhEd~ 681 (929)
T KOG2062|consen 625 AINLLEPLTSDPVDFVRQGALIALAMIMIQQTEQLCPK--VNGFRKQLEKVINDKHEDG 681 (929)
T ss_pred HHHHHhhhhcChHHHHHHHHHHHHHHHHHhcccccCch--HHHHHHHHHHHhhhhhhHH
Confidence 23334456667777888889888887742 222 2221 2456677888888877664
No 189
>PF05918 API5: Apoptosis inhibitory protein 5 (API5); InterPro: IPR008383 This family consists of apoptosis inhibitory protein 5 (API5) sequences from several organisms. Apoptosis or programmed cell death is a physiological form of cell death that occurs in embryonic development and organ formation. It is characterised by biochemical and morphological changes such as DNA fragmentation and cell volume shrinkage. API5 is an anti apoptosis gene located in Homo sapiens chromosome 11, whose expression prevents the programmed cell death that occurs upon the deprivation of growth factors [,].; PDB: 3U0R_A 3V6A_A.
Probab=96.11 E-value=1.1 Score=48.07 Aligned_cols=120 Identities=18% Similarity=0.243 Sum_probs=81.0
Q ss_pred HHHHHHHHHHHHHhhcCchhhhHHHhcCCcHHHHHhhcCCCHHHHHHHHHHHHHhhccChhhHHHHHhcCCHHHHHHHHc
Q 005044 180 SVIRRAADAITNLAHENSSIKTRVRMEGGIPPLVELLEFTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLR 259 (717)
Q Consensus 180 ~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~g~i~~L~~ll~ 259 (717)
...+.|+..+......-|..... .+..++.++.+.+..||..|.+.|..+|.++++....++ .+|+++|.
T Consensus 37 k~K~Laaq~I~kffk~FP~l~~~-----Ai~a~~DLcEDed~~iR~~aik~lp~~ck~~~~~v~kva-----DvL~QlL~ 106 (556)
T PF05918_consen 37 KEKRLAAQFIPKFFKHFPDLQEE-----AINAQLDLCEDEDVQIRKQAIKGLPQLCKDNPEHVSKVA-----DVLVQLLQ 106 (556)
T ss_dssp HHHHHHHHHHHHHHCC-GGGHHH-----HHHHHHHHHT-SSHHHHHHHHHHGGGG--T--T-HHHHH-----HHHHHHTT
T ss_pred HHHHHHHHHHHHHHhhChhhHHH-----HHHHHHHHHhcccHHHHHHHHHhHHHHHHhHHHHHhHHH-----HHHHHHHh
Confidence 78899999999999888877655 457999999999999999999999999987777665544 67999999
Q ss_pred CCCHHHHHHHHHHHHHhhcCChHHHHHHHHcCChHHHHHhhc---cCChHHHHHHHHHHHH
Q 005044 260 SEDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLS---SCCSESQREAALLLGQ 317 (717)
Q Consensus 260 ~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~l~~L~~ll~---~~~~~~~~~a~~~L~~ 317 (717)
++++.....+-.+|..+...++.. .+..+..-+. ..+..+|+.+...|..
T Consensus 107 tdd~~E~~~v~~sL~~ll~~d~k~--------tL~~lf~~i~~~~~~de~~Re~~lkFl~~ 159 (556)
T PF05918_consen 107 TDDPVELDAVKNSLMSLLKQDPKG--------TLTGLFSQIESSKSGDEQVRERALKFLRE 159 (556)
T ss_dssp ---HHHHHHHHHHHHHHHHH-HHH--------HHHHHHHHHH---HS-HHHHHHHHHHHHH
T ss_pred cccHHHHHHHHHHHHHHHhcCcHH--------HHHHHHHHHHhcccCchHHHHHHHHHHHH
Confidence 988877777777777776544432 2333333333 4566788888776643
No 190
>KOG1248 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.11 E-value=2.2 Score=48.91 Aligned_cols=216 Identities=13% Similarity=0.102 Sum_probs=125.6
Q ss_pred HHHHHHHHHHHHHhhcCchhhhHHHh--cCCcHHHHHhhcCCCHHHHHHHHHHHHHhhccCh-hhHHHHHhcCCHHHHHH
Q 005044 180 SVIRRAADAITNLAHENSSIKTRVRM--EGGIPPLVELLEFTDTKVQRAAAGALRTLAFKND-ENKNQIVECNALPTLIL 256 (717)
Q Consensus 180 ~~~~~a~~~L~~l~~~~~~~~~~~~~--~~~i~~L~~ll~~~~~~v~~~a~~~L~~L~~~~~-~~~~~~~~~g~i~~L~~ 256 (717)
.++..+-++|..++.. +.......+ ..+...|..-.++.....+...+.+|..|....+ ++...+. . .++.++-
T Consensus 669 ~vQkK~yrlL~~l~~~-~s~~~~~~q~i~~I~n~L~ds~qs~~~~~~~~rl~~L~~L~~~~~~e~~~~i~-k-~I~EvIL 745 (1176)
T KOG1248|consen 669 KVQKKAYRLLEELSSS-PSGEGLVEQRIDDIFNSLLDSFQSSSSPAQASRLKCLKRLLKLLSAEHCDLIP-K-LIPEVIL 745 (1176)
T ss_pred HHHHHHHHHHHHHhcC-CchhhHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHhccHHHHHHHH-H-HHHHHHH
Confidence 7888888888888874 222211111 1122344444455566777778888877765433 3322222 2 2444444
Q ss_pred HHcCCCHHHHHHHHHHHHHhhcCChHHHHHHHHcC------ChHHHHHhhcc----CChHHHHHHHHHHHHHhcCChhhH
Q 005044 257 MLRSEDSAIHYEAVGVIGNLVHSSPNIKKEVLAAG------ALQPVIGLLSS----CCSESQREAALLLGQFAATDSDCK 326 (717)
Q Consensus 257 ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g------~l~~L~~ll~~----~~~~~~~~a~~~L~~l~~~~~~~~ 326 (717)
.+++.+...++.+..+|..++. .+...+.| .+..++..+.. +...+......++..+........
T Consensus 746 ~~Ke~n~~aR~~Af~lL~~i~~-----i~~~~d~g~e~~~~~lnefl~~Isagl~gd~~~~~as~Ivai~~il~e~~~~l 820 (1176)
T KOG1248|consen 746 SLKEVNVKARRNAFALLVFIGA-----IQSSLDDGNEPASAILNEFLSIISAGLVGDSTRVVASDIVAITHILQEFKNIL 820 (1176)
T ss_pred hcccccHHHHhhHHHHHHHHHH-----HHhhhcccccchHHHHHHHHHHHHhhhcccHHHHHHHHHHHHHHHHHHHhccc
Confidence 4488888999999999998872 11111122 33344444433 223222222334444432211111
Q ss_pred HHHHhcCChHHHHHHhcCCCHHHHHHHHHHHHHhhcCCC-CchhhHhcCChHHHHHhhcCCChhHHHHHHHHHHhccC
Q 005044 327 VHIVQRGAVRPLIEMLQSPDVQLREMSAFALGRLAQDMH-NQAGIAHNGGLVPLLKLLDSKNGSLQHNAAFALYGLAD 403 (717)
Q Consensus 327 ~~l~~~~~l~~L~~~l~~~~~~v~~~a~~~L~~l~~~~~-~~~~l~~~~~l~~L~~ll~~~~~~v~~~a~~~L~~l~~ 403 (717)
..-.-.+++..+..+|.+..++++..|+..+..++..-+ ..-.......++.+..+.++....++..+-..+..|.+
T Consensus 821 d~~~l~~li~~V~~~L~s~sreI~kaAI~fikvlv~~~pe~~l~~~~~~LL~sll~ls~d~k~~~r~Kvr~LlekLir 898 (1176)
T KOG1248|consen 821 DDETLEKLISMVCLYLASNSREIAKAAIGFIKVLVYKFPEECLSPHLEELLPSLLALSHDHKIKVRKKVRLLLEKLIR 898 (1176)
T ss_pred cHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHcCCHHHHhhhHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHH
Confidence 112223456677777888999999999999999987432 23333333467778888888888888888888887764
No 191
>PF04078 Rcd1: Cell differentiation family, Rcd1-like ; InterPro: IPR007216 Rcd1 (Required cell differentiation 1) -like proteins are found among a wide range of organisms []. Rcd1 was initially identified as an essential factor in nitrogen starvation-invoked differentiation in fission yeast. This results largely from a defect in nitrogen starvation-invoked induction of ste11+, a key transcriptional factor gene required for the onset of sexual development. It is one of the most conserved proteins in eukaryotes, and its mammalian homologue is expressed in a variety of differentiating tissues [, ]. The mammalian Rcd1 is a novel transcriptional cofactor and is critical for retinoic acid-induced differentiation of F9 mouse teratocarcinoma cells, at least in part, via forming complexes with retinoic acid receptor and activation transcription factor-2 (ATF-2) []. Two of the members in this family have been characterised as being involved in regulation of Ste11 regulated sex genes [, ].; PDB: 2FV2_B.
Probab=95.93 E-value=1.5 Score=41.68 Aligned_cols=224 Identities=11% Similarity=0.102 Sum_probs=130.5
Q ss_pred chHHHhHHHHHHHHhc-CChhhHHHHH-hCCChHHHHHHHhccccCCCc----cchhHHHHHHHHHHHHHhhcCchhhhH
Q 005044 129 EHEVEKGSAFALGLLA-VKPEHQQLIV-DNGALSHLVNLLKRHMDSNCS----RAVNSVIRRAADAITNLAHENSSIKTR 202 (717)
Q Consensus 129 ~~~v~~~a~~~L~~l~-~~~~~~~~~~-~~~~i~~L~~lL~~~~~~~~~----~~~~~~~~~a~~~L~~l~~~~~~~~~~ 202 (717)
+|+.|+.|+.-|..-- ..++..-.+- ..|.+..|++=+-+-.+...+ .....-...|+..|..++. +++.|..
T Consensus 8 ~~~~Re~Al~eLsk~r~~~~~La~~LW~s~G~i~~LLqEIisiYp~l~~~~Lt~~~snRVcnaLaLlQ~vAs-hpetr~~ 86 (262)
T PF04078_consen 8 NPETRENALLELSKKRESFPDLAPLLWHSFGTIAALLQEIISIYPALSPPNLTARQSNRVCNALALLQCVAS-HPETRMP 86 (262)
T ss_dssp SHHHHHHHHHHHHHTCCC-TTHHHHHHTSTTHHHHHHHHHHGGGGGTTTT---HHHHHHHHHHHHHHHHHHH--TTTHHH
T ss_pred CcchHHHHHHHHHHhhhcccchhHHHHcCCChHHHHHHHHHHHcccCCCcccCHHHHHHHHHHHHHHHHHHc-ChHHHHH
Confidence 3477888877777665 3344433322 234444444332221111111 0011334556667777777 8889999
Q ss_pred HHhcCCcHHHHHhhcCC-----CHHHHHHHHHHHHHhhcc-ChhhHHHHHhcCCHHHHHHHHcCCCHHHHHHHHHHHHHh
Q 005044 203 VRMEGGIPPLVELLEFT-----DTKVQRAAAGALRTLAFK-NDENKNQIVECNALPTLILMLRSEDSAIHYEAVGVIGNL 276 (717)
Q Consensus 203 ~~~~~~i~~L~~ll~~~-----~~~v~~~a~~~L~~L~~~-~~~~~~~~~~~g~i~~L~~ll~~~~~~v~~~a~~~L~~l 276 (717)
+.+..+.-.|..+|... .+.+|...+++++.|+.. +++....+...+++|..++.++.++.-.+..|..++..+
T Consensus 87 Fl~a~iplyLyPfL~tt~k~r~~E~LRLtsLGVIgaLvK~d~~evi~fLl~tEiiplcLr~me~GselSKtvAtfIlqKI 166 (262)
T PF04078_consen 87 FLKAHIPLYLYPFLNTTSKTRPFEYLRLTSLGVIGALVKTDDPEVISFLLQTEIIPLCLRIMEFGSELSKTVATFILQKI 166 (262)
T ss_dssp HHHTTGGGGGHHHHH----SHHHHHHHHHHHHHHHHHHTT--HHHHHHHHCTTHHHHHHHHHHHS-HHHHHHHHHHHHHH
T ss_pred HHHcCchhhehhhhhccccccccchhhHhHHHHHHHHHcCCcHHHHHHHHhhchHHHHHHHHHhccHHHHHHHHHHHHHH
Confidence 99988877777777543 267899999999999873 345556677889999999999999888899999999888
Q ss_pred hcCChHHHHHHH-------H-cCChHHHH-HhhccCChHHHHHHHHHHHHHhcCChhhHHHHHhcCChHHHHHHhc----
Q 005044 277 VHSSPNIKKEVL-------A-AGALQPVI-GLLSSCCSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQ---- 343 (717)
Q Consensus 277 ~~~~~~~~~~~~-------~-~g~l~~L~-~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~l~~~~~l~~L~~~l~---- 343 (717)
..++... ..+. . ..++..++ .+...+++++-+....+-..++ .++..+..+.+ .+|. .++
T Consensus 167 L~dd~GL-~yiC~t~eRf~av~~vL~~mV~~l~~~pS~RLLKhIIrCYlRLs-dnprar~aL~~--~LP~---~Lrd~~f 239 (262)
T PF04078_consen 167 LLDDVGL-NYICQTAERFFAVAMVLNKMVEQLVKQPSPRLLKHIIRCYLRLS-DNPRAREALRQ--CLPD---QLRDGTF 239 (262)
T ss_dssp HHSHHHH-HHHTSSHHHHHHHHHHHHHHHHHHHHS--HHHHHHHHHHHHHHT-TSTTHHHHHHH--HS-G---GGTSSTT
T ss_pred HcchhHH-HHHhcCHHHHHHHHHHHHHHHHHHccCCChhHHHHHHHHHHHHc-cCHHHHHHHHH--hCcH---HHhcHHH
Confidence 6543321 1111 0 11222222 3445567888888888888885 45555554432 1221 222
Q ss_pred ----CCCHHHHHHHHHHHHHh
Q 005044 344 ----SPDVQLREMSAFALGRL 360 (717)
Q Consensus 344 ----~~~~~v~~~a~~~L~~l 360 (717)
.+|+.++..-...+.|+
T Consensus 240 ~~~l~~D~~~k~~l~qLl~nl 260 (262)
T PF04078_consen 240 SNILKDDPSTKRWLQQLLSNL 260 (262)
T ss_dssp TTGGCS-HHHHHHHHHHHHHT
T ss_pred HHHHhcCHHHHHHHHHHHHHh
Confidence 23666666655555554
No 192
>KOG1724 consensus SCF ubiquitin ligase, Skp1 component [Posttranslational modification, protein turnover, chaperones]
Probab=95.84 E-value=0.084 Score=46.33 Aligned_cols=90 Identities=21% Similarity=0.230 Sum_probs=67.7
Q ss_pred cCeEeehhHHHHhhccHHHHHhhcCCCCCCCCcceEcCCCCHHHHHHHHHHHhcCccc----------------------
Q 005044 557 EGRRFYAHRICLLASSDAFRAMFDGGYREKDARDIEIPNIRWEVFELMMRFIYTGSVD---------------------- 614 (717)
Q Consensus 557 ~~~~~~~h~~il~~~s~~f~~~~~~~~~e~~~~~i~l~~~~~~~~~~~l~~~Yt~~~~---------------------- 614 (717)
+|+.|.+-..+.. .|..+..++...--......|+|++++..+|..++.|+|--+-+
T Consensus 13 DG~~f~ve~~~a~-~s~~i~~~~~~~~~~~~~~~IPl~nV~~~iL~kVIewC~~Hk~d~~~~~~~~~~~~~~~i~~WD~~ 91 (162)
T KOG1724|consen 13 DGEIFEVEEEVAR-QSQTISAHMIEDGCADENDPIPLPNVTSKILKKVIEWCKKHKDDDPANPEDKELPEETDIPEWDAE 91 (162)
T ss_pred CCceeehhHHHHH-HhHHHHHHHHHcCCCccCCccccCccCHHHHHHHHHHHHHcccccccccccccccccCCccHHHHH
Confidence 6788888887766 77787777753211222257999999999999999999863211
Q ss_pred ---cchhhHHHHHHHHHhhChHhHHHHHHHHHHhcC
Q 005044 615 ---VTLDIAQDLLRAADQYLLEGLKRLCEYTIAQDI 647 (717)
Q Consensus 615 ---~~~~~~~~ll~~A~~~~~~~l~~~c~~~l~~~i 647 (717)
++..++.++..+|+++.+++|.++|...+...+
T Consensus 92 Flk~d~~tLfdli~AAnyLdi~gLl~~~ck~va~mi 127 (162)
T KOG1724|consen 92 FLKVDQGTLFDLILAANYLDIKGLLDLTCKTVANMI 127 (162)
T ss_pred HHhcCHHHHHHHHHHhhhcccHHHHHHHHHHHHHHH
Confidence 234578899999999999999999987766554
No 193
>KOG1665 consensus AFH1-interacting protein FIP2, contains BTB/POZ domain and pentapeptide repeats [General function prediction only]
Probab=95.77 E-value=0.027 Score=50.51 Aligned_cols=90 Identities=19% Similarity=0.265 Sum_probs=67.4
Q ss_pred EEEEEcCeEeehhHHHHhhccH--HHHHhhcCCC--CCCCCcceEcCCCCHHHHHHHHHHHhcCccc-cchhhHHHHHHH
Q 005044 552 VTFLVEGRRFYAHRICLLASSD--AFRAMFDGGY--REKDARDIEIPNIRWEVFELMMRFIYTGSVD-VTLDIAQDLLRA 626 (717)
Q Consensus 552 v~~~~~~~~~~~h~~il~~~s~--~f~~~~~~~~--~e~~~~~i~l~~~~~~~~~~~l~~~Yt~~~~-~~~~~~~~ll~~ 626 (717)
|.+.++|+.|...+.-+.-+-| .+.+||.+.- .+...+-..+-|-+|.-|++++.|+-.|.+. .+.-++.++++.
T Consensus 11 vrlnigGk~f~TTidTlv~rEPDSMLa~MF~~~g~~~~~d~kGa~lIDRsp~yFepIlNyLr~Gq~~~~s~i~~lgvLee 90 (302)
T KOG1665|consen 11 VRLNIGGKKFCTTIDTLVIREPDSMLAAMFSGRGAMCQEDKKGAVLIDRSPKYFEPILNYLRDGQIPSLSDIDCLGVLEE 90 (302)
T ss_pred heeecCCeEEEEeehhhcccCchHHHHHHHccCCCccccccCceEEEccCchhhHHHHHHHhcCceeecCCccHHHHHHH
Confidence 5566777777766665555543 6678887642 2222233444477999999999999999986 566789999999
Q ss_pred HHhhChHhHHHHHHH
Q 005044 627 ADQYLLEGLKRLCEY 641 (717)
Q Consensus 627 A~~~~~~~l~~~c~~ 641 (717)
|++|++-.|++..++
T Consensus 91 Arff~i~sL~~hle~ 105 (302)
T KOG1665|consen 91 ARFFQILSLKDHLED 105 (302)
T ss_pred hhHHhhHhHHhHHhh
Confidence 999999999999877
No 194
>KOG1967 consensus DNA repair/transcription protein Mms19 [Replication, recombination and repair; Transcription]
Probab=95.72 E-value=0.085 Score=57.85 Aligned_cols=152 Identities=15% Similarity=0.112 Sum_probs=109.6
Q ss_pred cCCcHHHHHhhcCCCHHHHHHHHHHHHHhhccChhhHHHHHh--cCCHHHHHHHHcCCCHHHHHHHHHHHHHhhcCChHH
Q 005044 206 EGGIPPLVELLEFTDTKVQRAAAGALRTLAFKNDENKNQIVE--CNALPTLILMLRSEDSAIHYEAVGVIGNLVHSSPNI 283 (717)
Q Consensus 206 ~~~i~~L~~ll~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~--~g~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~ 283 (717)
..++|.|++.........+..-+.+|.++..+.|. +.+.. ..++|.|++.|.-+|..++..+..+|..+....+..
T Consensus 866 ~~ivP~l~~~~~t~~~~~K~~yl~~LshVl~~vP~--~vllp~~~~LlPLLLq~Ls~~D~~v~vstl~~i~~~l~~~~tL 943 (1030)
T KOG1967|consen 866 CDIVPILVSKFETAPGSQKHNYLEALSHVLTNVPK--QVLLPQFPMLLPLLLQALSMPDVIVRVSTLRTIPMLLTESETL 943 (1030)
T ss_pred HhhHHHHHHHhccCCccchhHHHHHHHHHHhcCCH--HhhccchhhHHHHHHHhcCCCccchhhhHhhhhhHHHHhcccc
Confidence 35788888888755556666777777777753333 23322 357889999999999999999999998886544332
Q ss_pred HHHHHHcCChHHHHHhhccCC---hHHHHHHHHHHHHHhcCChhhHHHHHhcCChHHHHHHhcCCCHHHHHHHHHHHHHh
Q 005044 284 KKEVLAAGALQPVIGLLSSCC---SESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQSPDVQLREMSAFALGRL 360 (717)
Q Consensus 284 ~~~~~~~g~l~~L~~ll~~~~---~~~~~~a~~~L~~l~~~~~~~~~~l~~~~~l~~L~~~l~~~~~~v~~~a~~~L~~l 360 (717)
.. -.-..++|.++.+-.+.+ ..+|..|..+|..+...-|...-......++..|...|.++..-+|.+|..+=.+.
T Consensus 944 ~t-~~~~Tlvp~lLsls~~~~n~~~~VR~~ALqcL~aL~~~~P~~~l~~fr~~Vl~al~k~LdDkKRlVR~eAv~tR~~W 1022 (1030)
T KOG1967|consen 944 QT-EHLSTLVPYLLSLSSDNDNNMMVVREDALQCLNALTRRLPTKSLLSFRPLVLRALIKILDDKKRLVRKEAVDTRQNW 1022 (1030)
T ss_pred ch-HHHhHHHHHHHhcCCCCCcchhHHHHHHHHHHHHHhccCCCcccccccHHHHHHhhhccCcHHHHHHHHHHHHhhhh
Confidence 11 122346777777777655 57899999999999875565555555667888999999988888999998875554
No 195
>KOG2032 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.69 E-value=0.39 Score=49.24 Aligned_cols=265 Identities=16% Similarity=0.050 Sum_probs=131.1
Q ss_pred cCCHHHHHHHH----cCCCHHHHHHHHHHHHHhhcCChHHHHHHHHcCChHHHHHhhccCChHHHHHHHHHHHHHhcCCh
Q 005044 248 CNALPTLILML----RSEDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLSSCCSESQREAALLLGQFAATDS 323 (717)
Q Consensus 248 ~g~i~~L~~ll----~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~l~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~ 323 (717)
.|.+..++..+ .+++..++..|++.|++.+..-+.-.......-+...+..+....+.+|..++..+|..+...-.
T Consensus 253 ~~lL~s~~~~la~ka~dp~a~~r~~a~r~L~~~as~~P~kv~th~~~~ldaii~gL~D~~~~~V~leam~~Lt~v~~~~~ 332 (533)
T KOG2032|consen 253 TGLLGSVLLSLANKATDPSAKSRGMACRGLGNTASGAPDKVRTHKTTQLDAIIRGLYDDLNEEVQLEAMKCLTMVLEKAS 332 (533)
T ss_pred cccHHHHHHHHHHhccCchhHHHHHHHHHHHHHhccCcHHHHHhHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHhhh
Confidence 34554444433 46777999999999999988744432332222223334445555668898888888887752111
Q ss_pred hhHHHHHhcCChHHHHHHhcCCCHHHHHHHHHHHHHhhcCCC--CchhhHh--cCChHHHHHhhcCCChhHHHHHHHHHH
Q 005044 324 DCKVHIVQRGAVRPLIEMLQSPDVQLREMSAFALGRLAQDMH--NQAGIAH--NGGLVPLLKLLDSKNGSLQHNAAFALY 399 (717)
Q Consensus 324 ~~~~~l~~~~~l~~L~~~l~~~~~~v~~~a~~~L~~l~~~~~--~~~~l~~--~~~l~~L~~ll~~~~~~v~~~a~~~L~ 399 (717)
.......=-++.-.+..+..+.++++|.++...++.|+.... .+..+.+ .+...+++-.+.+.++.+.. ||....
T Consensus 333 ~~~l~~~~l~ialrlR~l~~se~~~~R~aa~~Lfg~L~~l~g~~~e~~Fte~v~k~~~~lllhl~d~~p~va~-ACr~~~ 411 (533)
T KOG2032|consen 333 NDDLESYLLNIALRLRTLFDSEDDKMRAAAFVLFGALAKLAGGGWEEFFTEQVKKRLAPLLLHLQDPNPYVAR-ACRSEL 411 (533)
T ss_pred hcchhhhchhHHHHHHHHHHhcChhhhhhHHHHHHHHHHHcCCCchhhhHHHHHhccccceeeeCCCChHHHH-HHHHHH
Confidence 111111111233456667788899999999999998886332 2333332 23344555556667776644 444444
Q ss_pred hccCCCcchHHHHHhcCccccccchh-HHhhhHHHHHHHHHHHHHHhhhc---hHHHHHHHHhhcchhHHHHHHHHHHhc
Q 005044 400 GLADNEDNVADFIRVGGVQKLQDGEF-IVQATKDCVAKTLKRLEEKIHGR---VLNHLLYLMRVAEKGVQRRVALALAHL 475 (717)
Q Consensus 400 ~l~~~~~~~~~l~~~~~i~~L~~~~~-~~~~~~~~~~~~~~~l~~~~~~~---~~~~L~~ll~~~~~~v~~~a~~aL~~l 475 (717)
..+...-.+... .+.++..++... .++.-.+ ..|..+.....+. .......++.+.-+.+|..+..--.++
T Consensus 412 ~~c~p~l~rke~--~~~~q~~ld~~~~~~q~Fyn---~~c~~L~~i~~d~l~~~~t~~~~~f~sswe~vr~aavl~t~~~ 486 (533)
T KOG2032|consen 412 RTCYPNLVRKEL--YHLFQESLDTDMARFQAFYN---QWCIQLNHIHPDILMLLLTEDQHIFSSSWEQVREAAVLKTTRS 486 (533)
T ss_pred HhcCchhHHHHH--HHHHhhhhHHhHHHHHHHHH---HHHHHHhhhCHHHHHHHHHhchhheecchHHHHHHHHHHHHHH
Confidence 443211111111 122222111100 0110000 0111221111110 111122233333445555555444444
Q ss_pred cCCCC--CceeeecCCCHHHHHHHhcCCCchhhhhhHHHHHHhhh
Q 005044 476 CSPDD--QRTIFIDGGGLELLLGLLGSTNPKQQLDGAVALFKLAN 518 (717)
Q Consensus 476 ~~~~~--~~~~~~~~~~l~~L~~ll~~~~~~v~~~a~~~l~~L~~ 518 (717)
..+-. .+...-.......|..+..++-++++..|..++..+..
T Consensus 487 vd~l~~~~c~~~d~~qL~~~ls~l~~dp~pev~~~a~~al~~l~~ 531 (533)
T KOG2032|consen 487 VDSLVRAACSSADGLQLRSSLSTLWRDPRPEVTDSARKALDLLSV 531 (533)
T ss_pred HHHhHHHHHHHhhHHHHHHHHHHHccCCCchhHHHHHHHhhhHhh
Confidence 32211 12111111223556677778999999999998877654
No 196
>KOG1967 consensus DNA repair/transcription protein Mms19 [Replication, recombination and repair; Transcription]
Probab=95.69 E-value=0.13 Score=56.53 Aligned_cols=151 Identities=12% Similarity=0.054 Sum_probs=105.4
Q ss_pred CChHHHHHhhccCChHHHHHHHHHHHHHhcCChhhHHHHHhcCChHHHHHHhcCCCHHHHHHHHHHHHHhhcCCCCchhh
Q 005044 291 GALQPVIGLLSSCCSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQSPDVQLREMSAFALGRLAQDMHNQAGI 370 (717)
Q Consensus 291 g~l~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~l~~~~~l~~L~~~l~~~~~~v~~~a~~~L~~l~~~~~~~~~l 370 (717)
.++|.+++.+.......+..-..+|.++..+-|.....-.-..++|.|++.|.-+|..+|..+..++..+....+.-...
T Consensus 867 ~ivP~l~~~~~t~~~~~K~~yl~~LshVl~~vP~~vllp~~~~LlPLLLq~Ls~~D~~v~vstl~~i~~~l~~~~tL~t~ 946 (1030)
T KOG1967|consen 867 DIVPILVSKFETAPGSQKHNYLEALSHVLTNVPKQVLLPQFPMLLPLLLQALSMPDVIVRVSTLRTIPMLLTESETLQTE 946 (1030)
T ss_pred hhHHHHHHHhccCCccchhHHHHHHHHHHhcCCHHhhccchhhHHHHHHHhcCCCccchhhhHhhhhhHHHHhccccchH
Confidence 57888888888666667777777888876555542222222567899999999999999999999998887654443333
Q ss_pred HhcCChHHHHHhhcCCC---hhHHHHHHHHHHhccC-CCcchHHHHHhcCccccccchhHHhhhHHHHHHHHHHHHHHhh
Q 005044 371 AHNGGLVPLLKLLDSKN---GSLQHNAAFALYGLAD-NEDNVADFIRVGGVQKLQDGEFIVQATKDCVAKTLKRLEEKIH 446 (717)
Q Consensus 371 ~~~~~l~~L~~ll~~~~---~~v~~~a~~~L~~l~~-~~~~~~~l~~~~~i~~L~~~~~~~~~~~~~~~~~~~~l~~~~~ 446 (717)
.-...++.++.+-.+.+ ..||..|+.+|..|.+ -+...-.- ..
T Consensus 947 ~~~Tlvp~lLsls~~~~n~~~~VR~~ALqcL~aL~~~~P~~~l~~---------------------------------fr 993 (1030)
T KOG1967|consen 947 HLSTLVPYLLSLSSDNDNNMMVVREDALQCLNALTRRLPTKSLLS---------------------------------FR 993 (1030)
T ss_pred HHhHHHHHHHhcCCCCCcchhHHHHHHHHHHHHHhccCCCccccc---------------------------------cc
Confidence 33445666666655544 5789999999999987 33221000 12
Q ss_pred hchHHHHHHHHhhcchhHHHHHHHHHHh
Q 005044 447 GRVLNHLLYLMRVAEKGVQRRVALALAH 474 (717)
Q Consensus 447 ~~~~~~L~~ll~~~~~~v~~~a~~aL~~ 474 (717)
..++..|.+.|+++..-||.+|..+=.+
T Consensus 994 ~~Vl~al~k~LdDkKRlVR~eAv~tR~~ 1021 (1030)
T KOG1967|consen 994 PLVLRALIKILDDKKRLVRKEAVDTRQN 1021 (1030)
T ss_pred HHHHHHhhhccCcHHHHHHHHHHHHhhh
Confidence 2377889999999999999999876544
No 197
>PF05004 IFRD: Interferon-related developmental regulator (IFRD); InterPro: IPR007701 Interferon-related developmental regulator (IFRD1) is the human homologue of the Rattus norvegicus early response protein PC4 and its murine homologue TIS7 []. The exact function of IFRD1 is unknown but it has been shown that PC4 is necessary for muscle differentiation and that it might have a role in signal transduction. This entry also contains IFRD2 and its murine equivalent SKMc15, which are highly expressed soon after gastrulation and in the hepatic primordium, suggesting an involvement in early hematopoiesis [].
Probab=95.68 E-value=0.96 Score=45.27 Aligned_cols=179 Identities=22% Similarity=0.193 Sum_probs=106.1
Q ss_pred HHHHHHHHHHHHHhhcCchhhhHHHh--cCCcHHHHHhhcCCCHHHHHHHHHHHHHhhcc--ChhhHHHHHhcCCHHHHH
Q 005044 180 SVIRRAADAITNLAHENSSIKTRVRM--EGGIPPLVELLEFTDTKVQRAAAGALRTLAFK--NDENKNQIVECNALPTLI 255 (717)
Q Consensus 180 ~~~~~a~~~L~~l~~~~~~~~~~~~~--~~~i~~L~~ll~~~~~~v~~~a~~~L~~L~~~--~~~~~~~~~~~g~i~~L~ 255 (717)
..+..++..+.++....... ..+.. ...+..+.+.++.+..+-+..|+.++.-++.. .......+.+ .+.|.|.
T Consensus 58 ~~Re~aL~~l~~~l~~~~~~-d~v~~~~~tL~~~~~k~lkkg~~~E~~lA~~~l~Ll~ltlg~g~~~~ei~~-~~~~~L~ 135 (309)
T PF05004_consen 58 STREAALEALIRALSSRYLP-DFVEDRRETLLDALLKSLKKGKSEEQALAARALALLALTLGAGEDSEEIFE-ELKPVLK 135 (309)
T ss_pred HHHHHHHHHHHHHHHhcccH-HHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHhhhcCCCccHHHHHH-HHHHHHH
Confidence 77788888887777544322 12211 12456667777777766677787877777653 2244445554 3678888
Q ss_pred HHHcCCC--HHHHHHHHHHHHHhhc---CChHHHHHHHHcCChHHHHH--hhcc----------CChHHHHHHHHHHHHH
Q 005044 256 LMLRSED--SAIHYEAVGVIGNLVH---SSPNIKKEVLAAGALQPVIG--LLSS----------CCSESQREAALLLGQF 318 (717)
Q Consensus 256 ~ll~~~~--~~v~~~a~~~L~~l~~---~~~~~~~~~~~~g~l~~L~~--ll~~----------~~~~~~~~a~~~L~~l 318 (717)
+.+.++. ..+|..++.+|+-++. .......... ..+..+.. ..+. +++.+...|+.+.+-|
T Consensus 136 ~~l~d~s~~~~~R~~~~~aLai~~fv~~~d~~~~~~~~--~~le~if~~~~~~~~~~~~~~~~~~~~~l~~aAL~aW~lL 213 (309)
T PF05004_consen 136 RILTDSSASPKARAACLEALAICTFVGGSDEEETEELM--ESLESIFLLSILKSDGNAPVVAAEDDAALVAAALSAWALL 213 (309)
T ss_pred HHHhCCccchHHHHHHHHHHHHHHHhhcCChhHHHHHH--HHHHHHHHHHhcCcCCCcccccCCCccHHHHHHHHHHHHH
Confidence 8888754 4566677767666533 2222211111 11221111 1111 1245777777777777
Q ss_pred hcCChhhHHHHHhcCChHHHHHHhcCCCHHHHHHHHHHHHHhhc
Q 005044 319 AATDSDCKVHIVQRGAVRPLIEMLQSPDVQLREMSAFALGRLAQ 362 (717)
Q Consensus 319 ~~~~~~~~~~l~~~~~l~~L~~~l~~~~~~v~~~a~~~L~~l~~ 362 (717)
...-+.....-.-...++.|..+|.+++..||.+|..+|.-|..
T Consensus 214 lt~~~~~~~~~~~~~~~~~l~~lL~s~d~~VRiAAGEaiAll~E 257 (309)
T PF05004_consen 214 LTTLPDSKLEDLLEEALPALSELLDSDDVDVRIAAGEAIALLYE 257 (309)
T ss_pred HhcCCHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHH
Confidence 65545432222224468999999999999999999998887654
No 198
>KOG1020 consensus Sister chromatid cohesion protein SCC2/Nipped-B [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=95.68 E-value=6.1 Score=46.75 Aligned_cols=144 Identities=12% Similarity=0.103 Sum_probs=92.4
Q ss_pred CChHHHHHhhcCCCCCccccCCCccchHHHhHHHHHHHHhc-CChhhHHHHHhCCChHHHHHHHhccccCCCccchhHHH
Q 005044 104 GAVPALVKHLQAPPTSEADRNLKPFEHEVEKGSAFALGLLA-VKPEHQQLIVDNGALSHLVNLLKRHMDSNCSRAVNSVI 182 (717)
Q Consensus 104 g~i~~L~~lL~~~~~~~~~~~~~~~~~~v~~~a~~~L~~l~-~~~~~~~~~~~~~~i~~L~~lL~~~~~~~~~~~~~~~~ 182 (717)
+.+..++..|..+.. .+|-.|++||..+. .+|..... ..+-..+-.-+.++.. .++
T Consensus 816 ~yLk~Il~~l~e~~i------------alRtkAlKclS~ive~Dp~vL~~---~dvq~~Vh~R~~Dssa--------sVR 872 (1692)
T KOG1020|consen 816 PYLKLILSVLGENAI------------ALRTKALKCLSMIVEADPSVLSR---PDVQEAVHGRLNDSSA--------SVR 872 (1692)
T ss_pred HHHHHHHHHhcCchH------------HHHHHHHHHHHHHHhcChHhhcC---HHHHHHHHHhhccchh--------HHH
Confidence 346677777876655 99999999999999 44443210 0011112222223322 899
Q ss_pred HHHHHHHHHHhhcCchhhhHHHhcCCcHHHHHhhcCCCHHHHHHHHHHHHHhhccChhhHHHHHhcCCHHHHHHHHcCCC
Q 005044 183 RRAADAITNLAHENSSIKTRVRMEGGIPPLVELLEFTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSED 262 (717)
Q Consensus 183 ~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~g~i~~L~~ll~~~~ 262 (717)
+.|+..++.....+++.-... -..+..-+.++...||..+.+.++.+|...|+.-.. .+ +...++.-..+++
T Consensus 873 EAaldLvGrfvl~~~e~~~qy-----Y~~i~erIlDtgvsVRKRvIKIlrdic~e~pdf~~i-~~--~cakmlrRv~DEE 944 (1692)
T KOG1020|consen 873 EAALDLVGRFVLSIPELIFQY-----YDQIIERILDTGVSVRKRVIKILRDICEETPDFSKI-VD--MCAKMLRRVNDEE 944 (1692)
T ss_pred HHHHHHHhhhhhccHHHHHHH-----HHHHHhhcCCCchhHHHHHHHHHHHHHHhCCChhhH-HH--HHHHHHHHhccch
Confidence 999999997776555543333 245666677888999999999999999855544221 11 2233334444555
Q ss_pred HHHHHHHHHHHHHhhc
Q 005044 263 SAIHYEAVGVIGNLVH 278 (717)
Q Consensus 263 ~~v~~~a~~~L~~l~~ 278 (717)
..++..+..++.++..
T Consensus 945 g~I~kLv~etf~klWF 960 (1692)
T KOG1020|consen 945 GNIKKLVRETFLKLWF 960 (1692)
T ss_pred hHHHHHHHHHHHHHhc
Confidence 6688889888888854
No 199
>PF11698 V-ATPase_H_C: V-ATPase subunit H; InterPro: IPR011987 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. This entry represents the C-terminal domain of subunit H (also known as Vma13p) found in the V1 complex of V-ATPases. This subunit has a regulatory function, being responsible for activating ATPase activity and coupling ATPase activity to proton flow []. The yeast enzyme contains five motifs similar to the HEAT or Armadillo repeats seen in the importins, and can be divided into two distinct domains: a large N-terminal domain consisting of stacked alpha helices, and a smaller C-terminal alpha-helical domain with a similar superhelical topology to an armadillo repeat []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0016820 hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances, 0015991 ATP hydrolysis coupled proton transport, 0000221 vacuolar proton-transporting V-type ATPase, V1 domain; PDB: 1HO8_A.
Probab=95.67 E-value=0.025 Score=46.43 Aligned_cols=71 Identities=20% Similarity=0.284 Sum_probs=60.1
Q ss_pred CcHHHHHhh-cCCCHHHHHHHHHHHHHhhccChhhHHHHHhcCCHHHHHHHHcCCCHHHHHHHHHHHHHhhc
Q 005044 208 GIPPLVELL-EFTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSEDSAIHYEAVGVIGNLVH 278 (717)
Q Consensus 208 ~i~~L~~ll-~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~v~~~a~~~L~~l~~ 278 (717)
.+..|+.+| .+.++.+...||.=|..++...|..+..+-+.|+=..++.++.++|++|+.+|+.++..+..
T Consensus 44 llk~L~~lL~~s~d~~~laVac~Dig~~vr~~p~gr~ii~~lg~K~~vM~Lm~h~d~eVr~eAL~avQklm~ 115 (119)
T PF11698_consen 44 LLKKLIKLLDKSDDPTTLAVACHDIGEFVRHYPNGRNIIEKLGAKERVMELMNHEDPEVRYEALLAVQKLMV 115 (119)
T ss_dssp HHHHHHHHH-SHHHHHHHHHHHHHHHHHHHH-GGGHHHHHHHSHHHHHHHHTS-SSHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHccCCCcceeehhhcchHHHHHHChhHHHHHHhcChHHHHHHHhcCCCHHHHHHHHHHHHHHHH
Confidence 467888888 44678888899999999999888888888888999999999999999999999999987753
No 200
>KOG2025 consensus Chromosome condensation complex Condensin, subunit G [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=95.59 E-value=1.3 Score=47.62 Aligned_cols=134 Identities=16% Similarity=0.226 Sum_probs=86.7
Q ss_pred HHHHHHHHHHHHhhccChhhHHHHHhcCCHHHHHHHHcCCCHHHHHHHHHHHHHhhcCChHHHHHHHHcCChHHHHHhhc
Q 005044 222 KVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSEDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLS 301 (717)
Q Consensus 222 ~v~~~a~~~L~~L~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~l~~L~~ll~ 301 (717)
.+...+...+..+-..+.+ ..++ .|.+..+++...+++..||..++..|..+...... ...-+-.++...+..-+.
T Consensus 61 RIl~fla~fv~sl~q~d~e--~DlV-~~~f~hlLRg~Eskdk~VRfrvlqila~l~d~~~e-idd~vfn~l~e~l~~Rl~ 136 (892)
T KOG2025|consen 61 RILSFLARFVESLPQLDKE--EDLV-AGTFYHLLRGTESKDKKVRFRVLQILALLSDENAE-IDDDVFNKLNEKLLIRLK 136 (892)
T ss_pred HHHHHHHHHHHhhhccCch--hhHH-HHHHHHHHhcccCcchhHHHHHHHHHHHHhccccc-cCHHHHHHHHHHHHHHHh
Confidence 4444445555544432222 2233 24666777777788999999999999998653222 233344566777777788
Q ss_pred cCChHHHHHHHHHHHHHhcCChhhHHHHHhcCChHHHHHHhcC-CCHHHHHHHHHHHHHhhcCCCCc
Q 005044 302 SCCSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQS-PDVQLREMSAFALGRLAQDMHNQ 367 (717)
Q Consensus 302 ~~~~~~~~~a~~~L~~l~~~~~~~~~~l~~~~~l~~L~~~l~~-~~~~v~~~a~~~L~~l~~~~~~~ 367 (717)
+..+.||.+|..+|+.+-. ++... +..+...+..+++. ++++||.. +|.|++-++...
T Consensus 137 Drep~VRiqAv~aLsrlQ~-d~~de----e~~v~n~l~~liqnDpS~EVRRa---aLsnI~vdnsTl 195 (892)
T KOG2025|consen 137 DREPNVRIQAVLALSRLQG-DPKDE----ECPVVNLLKDLIQNDPSDEVRRA---ALSNISVDNSTL 195 (892)
T ss_pred ccCchHHHHHHHHHHHHhc-CCCCC----cccHHHHHHHHHhcCCcHHHHHH---HHHhhccCcccc
Confidence 8889999999999999952 22111 13345667777755 78999998 566766554443
No 201
>PF08045 CDC14: Cell division control protein 14, SIN component; InterPro: IPR012535 Cdc14 is a component of the septation initiation network (SIN) and is required for the localisation and activity of Sid1. Sid1 is a protein kinase that localises asymmetrically to one spindle pole body (SPB) in anaphase disappears prior to cell separation [], [].
Probab=95.57 E-value=0.27 Score=46.83 Aligned_cols=99 Identities=15% Similarity=0.115 Sum_probs=82.4
Q ss_pred HHHHHHHHHHHhhc-ChhhHHHHHhCCChHHHHHhhcCCCCCccccCCCccchHHHhHHHHHHHHhc-CChhhHHHHHhC
Q 005044 79 AAKRATHVLAELAK-NEEVVNWIVEGGAVPALVKHLQAPPTSEADRNLKPFEHEVEKGSAFALGLLA-VKPEHQQLIVDN 156 (717)
Q Consensus 79 ~~~~a~~~L~~l~~-~~~~~~~~~~~g~i~~L~~lL~~~~~~~~~~~~~~~~~~v~~~a~~~L~~l~-~~~~~~~~~~~~ 156 (717)
....|++.|.-++- +|..+..+.+...+..|+.+|..... +.++..++.+|..+. +++.+...+-..
T Consensus 107 li~~aL~vLQGl~LLHp~Sr~lF~r~~~m~lll~LL~~~~~-----------~~i~~a~L~tLv~iLld~p~N~r~FE~~ 175 (257)
T PF08045_consen 107 LIALALRVLQGLCLLHPPSRKLFHREQNMELLLDLLSPSNP-----------PAIQSACLDTLVCILLDSPENQRDFEEL 175 (257)
T ss_pred HHHHHHHHHHHHHHcCchHHHHHhhhhhHHHHHHHhccCCC-----------chHHHHHHHHHHHHHHcChHHHHHHHHh
Confidence 45667788888777 89999999999999999999954332 289999999998888 999999999999
Q ss_pred CChHHHHHHHhccccCCCccchhHHHHHHHHHHHHHhh
Q 005044 157 GALSHLVNLLKRHMDSNCSRAVNSVIRRAADAITNLAH 194 (717)
Q Consensus 157 ~~i~~L~~lL~~~~~~~~~~~~~~~~~~a~~~L~~l~~ 194 (717)
+|+..++.++++...+. +++..++..|.-...
T Consensus 176 ~Gl~~v~~llk~~~~~~------~~r~K~~EFL~fyl~ 207 (257)
T PF08045_consen 176 NGLSTVCSLLKSKSTDR------ELRLKCIEFLYFYLM 207 (257)
T ss_pred CCHHHHHHHHccccccH------HHhHHHHHHHHHHHc
Confidence 99999999999876532 787778777776654
No 202
>KOG4464 consensus Signaling protein RIC-8/synembryn (regulates neurotransmitter secretion) [Signal transduction mechanisms]
Probab=95.55 E-value=0.89 Score=45.46 Aligned_cols=130 Identities=14% Similarity=0.043 Sum_probs=74.3
Q ss_pred HHHhHHHHHHHHhcCChhhHHHHHhCCChHHHHHHHhc--cccCCCccchhHHHHHHHHHHHHHhhcCchhhhHHHhcCC
Q 005044 131 EVEKGSAFALGLLAVKPEHQQLIVDNGALSHLVNLLKR--HMDSNCSRAVNSVIRRAADAITNLAHENSSIKTRVRMEGG 208 (717)
Q Consensus 131 ~v~~~a~~~L~~l~~~~~~~~~~~~~~~i~~L~~lL~~--~~~~~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~ 208 (717)
..+..++.++.-|+.+...-+-+.....++.|+.+-+- .......-++.++...++.+|.|+...++..+..+.+...
T Consensus 61 t~~v~~LetvrILSRdk~~L~~~~~~q~~~~ll~~A~ls~~e~sl~~v~d~~vi~EslKCLcNlvf~Sq~~q~~~~~~~~ 140 (532)
T KOG4464|consen 61 THRVVCLETVRILSRDKDGLEPLTNDQLCQKLLALAELSSNENSLPTVADMHVIMESLKCLCNLVFHSQRAQDLFLENPL 140 (532)
T ss_pred hhhhhHHHHHHHHhccccccccccchHHHHHHHHHHHhccccCCCCcccchHHHHHHHHHHHHHHhccHHHHHHHHhhhh
Confidence 45556666666666332221111111223344443321 1211122233488999999999999999989888888777
Q ss_pred cHHHHHhhcCC-----CHHHHHHHHHHHHHhhccChhhHHH-HHhcCCHHHHHHHHcC
Q 005044 209 IPPLVELLEFT-----DTKVQRAAAGALRTLAFKNDENKNQ-IVECNALPTLILMLRS 260 (717)
Q Consensus 209 i~~L~~ll~~~-----~~~v~~~a~~~L~~L~~~~~~~~~~-~~~~g~i~~L~~ll~~ 260 (717)
...+.+.+... .-.+...-++.|.-++.-....+.. +++.++++.+.+++.+
T Consensus 141 ~~~ll~~v~~~~er~~~~~~~~~dlrLLflltale~~~Rsql~~~l~Gl~~lt~~led 198 (532)
T KOG4464|consen 141 TGKLLQRVLGEFERNFPKDSSIFDLRLLFLLTALETDHRSQLIAELLGLELLTNWLED 198 (532)
T ss_pred HHHHHHHHHHHHHhcCCccchhhHHHHHHHHHHhhHHHHHHHHHHhcccHHHHHHhhc
Confidence 77776655321 1223344445555554434444444 5678899999999874
No 203
>PF13764 E3_UbLigase_R4: E3 ubiquitin-protein ligase UBR4
Probab=95.54 E-value=2.6 Score=47.61 Aligned_cols=186 Identities=12% Similarity=0.134 Sum_probs=114.8
Q ss_pred HhCCChHHHHHHHhccccCCCccchhHHHHHHHHHHHHHhhcCchhhhHHHhcCCcHHHHHhhc----CCC----HHHHH
Q 005044 154 VDNGALSHLVNLLKRHMDSNCSRAVNSVIRRAADAITNLAHENSSIKTRVRMEGGIPPLVELLE----FTD----TKVQR 225 (717)
Q Consensus 154 ~~~~~i~~L~~lL~~~~~~~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~----~~~----~~v~~ 225 (717)
.+.|++..++.++....+....+ ++....+..|...|. -+.+|+.+.+.++++.|+..+. .+. +.+.+
T Consensus 114 ~~~gGL~~ll~~l~~~~~~~~~~---~ll~~llkLL~~c~K-v~~NR~~Ll~~~al~~LL~~L~~~l~~~~~~~~~~i~E 189 (802)
T PF13764_consen 114 AECGGLEVLLSRLDSIRDFSRGR---ELLQVLLKLLRYCCK-VKVNRRALLELNALNRLLSVLNRALQANQNSSQAEIAE 189 (802)
T ss_pred hcCCCHHHHHHHHHhhccccCcH---HHHHHHHHHHHHHHh-hHHHHHHHHHcCCHHHHHHHHHHHHhCccccccchHHH
Confidence 45688999999998765432222 566666777776666 6889999999999999988774 333 56777
Q ss_pred HHHHHHHHhhccChhhHHH----HHhcC--------CHHHHHHHHcC----CCHHHHHHHHHHHHHhhcCChHHHHHHHH
Q 005044 226 AAAGALRTLAFKNDENKNQ----IVECN--------ALPTLILMLRS----EDSAIHYEAVGVIGNLVHSSPNIKKEVLA 289 (717)
Q Consensus 226 ~a~~~L~~L~~~~~~~~~~----~~~~g--------~i~~L~~ll~~----~~~~v~~~a~~~L~~l~~~~~~~~~~~~~ 289 (717)
..+.++..+.......... ..... -+..|++.+.+ .++.+....+++|..|+.++++..+.+++
T Consensus 190 ~LL~IiE~ll~ea~~~~~~~~~~~~~~~~~~~~~~~~v~~lL~~l~s~~~r~~~~i~~~l~RiLP~Lt~G~~e~m~~Lv~ 269 (802)
T PF13764_consen 190 QLLEIIESLLSEANSSSSSESKSSSSLSGSEEQDKEQVEMLLERLNSPFVRSNPQILQALARILPFLTYGNEEKMDALVE 269 (802)
T ss_pred HHHHHHHHHHHHHhhhhhhhccccccccccccccHHHHHHHHHHhcCccccCCHHHHHHHHHHhhHHhcCCHHHHHHHHH
Confidence 7777777776421111000 01111 25566666654 36889999999999999998877555544
Q ss_pred cCChHHHHHhhccC---ChHHHHHHHHHHHHHhcC------ChhhHHHHHhcCChHHHHHHhcCCC
Q 005044 290 AGALQPVIGLLSSC---CSESQREAALLLGQFAAT------DSDCKVHIVQRGAVRPLIEMLQSPD 346 (717)
Q Consensus 290 ~g~l~~L~~ll~~~---~~~~~~~a~~~L~~l~~~------~~~~~~~l~~~~~l~~L~~~l~~~~ 346 (717)
. +...+++=.-+ ..+- ...+..++.++.. ....+..+++.|++...++++...-
T Consensus 270 ~--F~p~l~f~~~D~~~~~~~-~~~Le~F~~i~~~I~~~~~G~~LK~~Il~~GIv~~a~~YL~~~~ 332 (802)
T PF13764_consen 270 H--FKPYLDFDKFDEEHSPDE-QFKLECFCEIAEGIPNNSNGNRLKDKILESGIVQDAIDYLLKHF 332 (802)
T ss_pred H--HHHhcChhhcccccCchH-HHHHHHHHHHHhcCCCCCchHHHHHHHHHhhHHHHHHHHHHHhC
Confidence 2 12222211111 1111 1224444444422 1355678889999998888886543
No 204
>PF12719 Cnd3: Nuclear condensing complex subunits, C-term domain
Probab=95.51 E-value=0.67 Score=46.41 Aligned_cols=151 Identities=19% Similarity=0.142 Sum_probs=100.5
Q ss_pred CCHHHHH-HHHcCCCHHHHHHHHHHHHHhhcCChHHHHHHHHcCChHHHHHhhccCChHHHHHHHHHHHHHhcC-ChhhH
Q 005044 249 NALPTLI-LMLRSEDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLSSCCSESQREAALLLGQFAAT-DSDCK 326 (717)
Q Consensus 249 g~i~~L~-~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~l~~L~~ll~~~~~~~~~~a~~~L~~l~~~-~~~~~ 326 (717)
++++.|+ ..++++++.+|..++.+|+-.+--+..... ..++.+...+..++..++..|+.++..+... +....
T Consensus 26 ~ll~~lI~P~v~~~~~~vR~~al~cLGl~~Lld~~~a~-----~~l~l~~~~~~~~~~~v~~~al~~l~Dll~~~g~~~~ 100 (298)
T PF12719_consen 26 SLLDSLILPAVQSSDPAVRELALKCLGLCCLLDKELAK-----EHLPLFLQALQKDDEEVKITALKALFDLLLTHGIDIF 100 (298)
T ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhChHHHH-----HHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCchhc
Confidence 3444444 678899999999999999999876654322 2467788888777899999999999887632 21111
Q ss_pred HH-------HHhcCChHHHHHHhcCCCHHHHHHHHHHHHHhhcCCCCchhhHhcCChHHHHHhh----cCCChhHHHHHH
Q 005044 327 VH-------IVQRGAVRPLIEMLQSPDVQLREMSAFALGRLAQDMHNQAGIAHNGGLVPLLKLL----DSKNGSLQHNAA 395 (717)
Q Consensus 327 ~~-------l~~~~~l~~L~~~l~~~~~~v~~~a~~~L~~l~~~~~~~~~l~~~~~l~~L~~ll----~~~~~~v~~~a~ 395 (717)
.. .....++..+.+.+.+.+++++..++..++.|.-...... ....+..|+-+. ..++..+++.-.
T Consensus 101 ~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~a~EGl~KLlL~~~i~~---~~~vL~~Lll~yF~p~t~~~~~LrQ~L~ 177 (298)
T PF12719_consen 101 DSESDNDESVDSKSLLKILTKFLDSENPELQAIAVEGLCKLLLSGRISD---PPKVLSRLLLLYFNPSTEDNQRLRQCLS 177 (298)
T ss_pred cchhccCccchHhHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhcCCCCc---HHHHHHHHHHHHcCcccCCcHHHHHHHH
Confidence 11 2234577888888988999999999999999886443322 122333333222 223556777666
Q ss_pred HHHHhccCCCcc
Q 005044 396 FALYGLADNEDN 407 (717)
Q Consensus 396 ~~L~~l~~~~~~ 407 (717)
..+...+.....
T Consensus 178 ~Ffp~y~~s~~~ 189 (298)
T PF12719_consen 178 VFFPVYASSSPE 189 (298)
T ss_pred HHHHHHHcCCHH
Confidence 777777665443
No 205
>PF12717 Cnd1: non-SMC mitotic condensation complex subunit 1
Probab=95.50 E-value=0.54 Score=42.91 Aligned_cols=91 Identities=20% Similarity=0.217 Sum_probs=67.6
Q ss_pred HHHHHHHHHHHHHhhc-ChhhHHHHHhCCChHHHHHhhcCCCCCccccCCCccchHHHhHHHHHHHHhcCChhhHHHHHh
Q 005044 77 RAAAKRATHVLAELAK-NEEVVNWIVEGGAVPALVKHLQAPPTSEADRNLKPFEHEVEKGSAFALGLLAVKPEHQQLIVD 155 (717)
Q Consensus 77 ~~~~~~a~~~L~~l~~-~~~~~~~~~~~g~i~~L~~lL~~~~~~~~~~~~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~ 155 (717)
+.++..++.+++.++. .|...+. .+|.+...|+++++ .||..|+.+|..|....-.+ .+
T Consensus 2 ~~vR~n~i~~l~DL~~r~~~~ve~-----~~~~l~~~L~D~~~------------~VR~~al~~Ls~Li~~d~ik---~k 61 (178)
T PF12717_consen 2 PSVRNNAIIALGDLCIRYPNLVEP-----YLPNLYKCLRDEDP------------LVRKTALLVLSHLILEDMIK---VK 61 (178)
T ss_pred HHHHHHHHHHHHHHHHhCcHHHHh-----HHHHHHHHHCCCCH------------HHHHHHHHHHHHHHHcCcee---eh
Confidence 3578889999999887 5554443 37899999998877 99999999999998332211 11
Q ss_pred CCChHHHHHHHhccccCCCccchhHHHHHHHHHHHHHhhc
Q 005044 156 NGALSHLVNLLKRHMDSNCSRAVNSVIRRAADAITNLAHE 195 (717)
Q Consensus 156 ~~~i~~L~~lL~~~~~~~~~~~~~~~~~~a~~~L~~l~~~ 195 (717)
...+..++..+.+.++ +++..|..++..+...
T Consensus 62 ~~l~~~~l~~l~D~~~--------~Ir~~A~~~~~e~~~~ 93 (178)
T PF12717_consen 62 GQLFSRILKLLVDENP--------EIRSLARSFFSELLKK 93 (178)
T ss_pred hhhhHHHHHHHcCCCH--------HHHHHHHHHHHHHHHh
Confidence 2223667777876665 8999999999998875
No 206
>PF05004 IFRD: Interferon-related developmental regulator (IFRD); InterPro: IPR007701 Interferon-related developmental regulator (IFRD1) is the human homologue of the Rattus norvegicus early response protein PC4 and its murine homologue TIS7 []. The exact function of IFRD1 is unknown but it has been shown that PC4 is necessary for muscle differentiation and that it might have a role in signal transduction. This entry also contains IFRD2 and its murine equivalent SKMc15, which are highly expressed soon after gastrulation and in the hepatic primordium, suggesting an involvement in early hematopoiesis [].
Probab=95.42 E-value=0.9 Score=45.49 Aligned_cols=178 Identities=20% Similarity=0.204 Sum_probs=103.7
Q ss_pred HHHHHHHHHHHHhhcChhhHHHHH--hCCChHHHHHhhcCCCCCccccCCCccchHHHhHHHHHHHHhc-C--ChhhHHH
Q 005044 78 AAAKRATHVLAELAKNEEVVNWIV--EGGAVPALVKHLQAPPTSEADRNLKPFEHEVEKGSAFALGLLA-V--KPEHQQL 152 (717)
Q Consensus 78 ~~~~~a~~~L~~l~~~~~~~~~~~--~~g~i~~L~~lL~~~~~~~~~~~~~~~~~~v~~~a~~~L~~l~-~--~~~~~~~ 152 (717)
..|..++..+.++....-....+. ..-.+..+.+.++.+.. +-+..|+++++-++ . .......
T Consensus 58 ~~Re~aL~~l~~~l~~~~~~d~v~~~~~tL~~~~~k~lkkg~~------------~E~~lA~~~l~Ll~ltlg~g~~~~e 125 (309)
T PF05004_consen 58 STREAALEALIRALSSRYLPDFVEDRRETLLDALLKSLKKGKS------------EEQALAARALALLALTLGAGEDSEE 125 (309)
T ss_pred HHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHhccCCH------------HHHHHHHHHHHHHhhhcCCCccHHH
Confidence 358999999998776322222222 12356777777777655 44567888888887 2 1222333
Q ss_pred HHhCCChHHHHHHHhccccCCCccchhHHHHHHHHHHHHHhh---cCchhhhHHHhcCCcHHHH--Hhhc----------
Q 005044 153 IVDNGALSHLVNLLKRHMDSNCSRAVNSVIRRAADAITNLAH---ENSSIKTRVRMEGGIPPLV--ELLE---------- 217 (717)
Q Consensus 153 ~~~~~~i~~L~~lL~~~~~~~~~~~~~~~~~~a~~~L~~l~~---~~~~~~~~~~~~~~i~~L~--~ll~---------- 217 (717)
+.+ ...|.|...+.+..... ..+..++.+|+-++. .++..-.... ..+..+. ...+
T Consensus 126 i~~-~~~~~L~~~l~d~s~~~------~~R~~~~~aLai~~fv~~~d~~~~~~~~--~~le~if~~~~~~~~~~~~~~~~ 196 (309)
T PF05004_consen 126 IFE-ELKPVLKRILTDSSASP------KARAACLEALAICTFVGGSDEEETEELM--ESLESIFLLSILKSDGNAPVVAA 196 (309)
T ss_pred HHH-HHHHHHHHHHhCCccch------HHHHHHHHHHHHHHHhhcCChhHHHHHH--HHHHHHHHHHhcCcCCCcccccC
Confidence 333 45778888888764421 455566666666554 2221111000 1112111 1111
Q ss_pred CCCHHHHHHHHHHHHHhhccChhh-HHHHHhcCCHHHHHHHHcCCCHHHHHHHHHHHHHhh
Q 005044 218 FTDTKVQRAAAGALRTLAFKNDEN-KNQIVECNALPTLILMLRSEDSAIHYEAVGVIGNLV 277 (717)
Q Consensus 218 ~~~~~v~~~a~~~L~~L~~~~~~~-~~~~~~~g~i~~L~~ll~~~~~~v~~~a~~~L~~l~ 277 (717)
.+++.+...|+.+...|...-+.. ..... ...++.|..+|.+++.+||..|..+|.-|.
T Consensus 197 ~~~~~l~~aAL~aW~lLlt~~~~~~~~~~~-~~~~~~l~~lL~s~d~~VRiAAGEaiAll~ 256 (309)
T PF05004_consen 197 EDDAALVAAALSAWALLLTTLPDSKLEDLL-EEALPALSELLDSDDVDVRIAAGEAIALLY 256 (309)
T ss_pred CCccHHHHHHHHHHHHHHhcCCHHHHHHHH-HHHHHHHHHHhcCCCHHHHHHHHHHHHHHH
Confidence 124678888888777776544442 22222 236899999999999999999999988774
No 207
>PF07814 WAPL: Wings apart-like protein regulation of heterochromatin; InterPro: IPR022771 This entry contains sequences expressed in eukaryotic organisms (metazoa, fungi, plants) bearing high similarity to the WAPL conserved region of D. melanogaster wings apart-like protein. This protein is involved in the regulation of heterochromatin structure []. hWAPL (Q7Z5K2 from SWISSPROT), the human homologue, is found to play a role in the development of cervical carcinogenesis, and is thought to have similar functions to Drosophila wapl protein []. Malfunction of the hWAPL pathway is thought to activate an apoptotic pathway that consequently leads to cell death []. This entry includes proteins from metazoa, fungi and plants.
Probab=95.39 E-value=0.87 Score=46.84 Aligned_cols=270 Identities=14% Similarity=0.145 Sum_probs=140.1
Q ss_pred hHHHHHhhcCCCCCccccCCCccchHHHhHHHHHHHHhcCChhhHHHHHhCCChHHHHHHHhccccCCCccchhHHHHHH
Q 005044 106 VPALVKHLQAPPTSEADRNLKPFEHEVEKGSAFALGLLAVKPEHQQLIVDNGALSHLVNLLKRHMDSNCSRAVNSVIRRA 185 (717)
Q Consensus 106 i~~L~~lL~~~~~~~~~~~~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~i~~L~~lL~~~~~~~~~~~~~~~~~~a 185 (717)
+..++.=|..+.+ ..+|+.++--|+.-+.+++++..+...|..+.+.+.+.+.... .+...+
T Consensus 23 v~ylld~l~~~~~-----------~s~Rr~sll~La~K~~~~~Fr~~~ra~g~~~~l~~~l~~~~~d-------~~~~l~ 84 (361)
T PF07814_consen 23 VEYLLDGLESSSS-----------SSVRRSSLLELASKCADPQFRRQFRAHGLVKRLFKALSDAPDD-------DILALA 84 (361)
T ss_pred HHHHHhhcccCCC-----------ccHHHHHHHHHHHHhCCHHHHHHHHHcCcHHHHHHHhccccch-------HHHHHH
Confidence 5666666663222 2889999999999999999999999999999999999665542 234444
Q ss_pred HHHHHHHhhcCchhhhHHHhcCCcHHHHHhhcC--C---CHHHHHHHHHHHHHhhccChhhHHHHHhcCCHHHHHHHHc-
Q 005044 186 ADAITNLAHENSSIKTRVRMEGGIPPLVELLEF--T---DTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLR- 259 (717)
Q Consensus 186 ~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~--~---~~~v~~~a~~~L~~L~~~~~~~~~~~~~~g~i~~L~~ll~- 259 (717)
+.++..+...+......+...+....++.++.- . .......-...+.... .+.+..+...+.
T Consensus 85 ~a~i~~~l~~d~~~~~l~~~~~~~~ll~~Ll~~~~~~~~~~~~~~~~~~~lsk~~------------~~~~~~~~~~~~~ 152 (361)
T PF07814_consen 85 TAAILYVLSRDGLNMHLLLDRDSLRLLLKLLKVDKSLDVPSDSDSSRKKNLSKVQ------------QKSRSLCKELLSS 152 (361)
T ss_pred HHHHHHHHccCCcchhhhhchhHHHHHHHHhccccccccccchhhhhhhhhhHHH------------HHHHHHHHHHHhc
Confidence 344433333233333333344555555666651 0 0000000000000000 001111111110
Q ss_pred --------CCCHHHHHHHHHHHHHhh--------------cCChHHHHHHHHcCChHHHHHhhcc----C-------C--
Q 005044 260 --------SEDSAIHYEAVGVIGNLV--------------HSSPNIKKEVLAAGALQPVIGLLSS----C-------C-- 304 (717)
Q Consensus 260 --------~~~~~v~~~a~~~L~~l~--------------~~~~~~~~~~~~~g~l~~L~~ll~~----~-------~-- 304 (717)
....+-+..|+.++..++ ...+..+..+...|+++.++..+.+ . .
T Consensus 153 ~~~~~~~~~~~lsp~~lall~le~l~~~~~~~~~~~~t~~~~~~~fkeelr~lg~Ld~iv~~l~~~~~~~~~~~~~~~~~ 232 (361)
T PF07814_consen 153 GSSWKSPKPPELSPQTLALLALESLVRSLREAGDLSETSSRAGEWFKEELRELGGLDHIVDILKDCHSSLSSADAWDDPS 232 (361)
T ss_pred cccccccCCcccccccHHHHHHHHHHHHHhhcccchhhhhhccccchhhhhhHHHHHHHHHHHHHhhhhhhhhhhccccc
Confidence 112233444555444442 1112345666677889999888762 1 0
Q ss_pred ---hHHHHHHHHHHHHHhcCChhhHHHHHhc--CChHHHHHH-hc---CCCHHHHHHHHHHHHHhhcCC-CCchhhHhcC
Q 005044 305 ---SESQREAALLLGQFAATDSDCKVHIVQR--GAVRPLIEM-LQ---SPDVQLREMSAFALGRLAQDM-HNQAGIAHNG 374 (717)
Q Consensus 305 ---~~~~~~a~~~L~~l~~~~~~~~~~l~~~--~~l~~L~~~-l~---~~~~~v~~~a~~~L~~l~~~~-~~~~~l~~~~ 374 (717)
......+..+|.+.+...+.+...+... +.++.+... +. ....+....++..+.|++.+. ..+..+...+
T Consensus 233 ~~~l~~l~~cl~ILEs~T~~~~~nq~~l~~~~~~~l~~~~~~l~~~~~~~~~~~l~~~lrlllNlTn~n~~~c~~~~s~~ 312 (361)
T PF07814_consen 233 LQSLIDLERCLSILESVTFLSEENQSYLLSHRSSLLPQLLSTLLRQCDDQVIQLLLLALRLLLNLTNNNPSACEEFASPK 312 (361)
T ss_pred hHHHHHHHHHHHHHHHHHhcCccchHHHHHhcccchHHHHHHHHHHHHHHHHHHHHHHHHHeeeCCCCCccchHhhhhhH
Confidence 1123456778888776666666555442 233333332 22 223444567888888998754 3344444432
Q ss_pred ChHH---HHHhh----c-------CCChhHHHHHHHHHHhccCCC
Q 005044 375 GLVP---LLKLL----D-------SKNGSLQHNAAFALYGLADNE 405 (717)
Q Consensus 375 ~l~~---L~~ll----~-------~~~~~v~~~a~~~L~~l~~~~ 405 (717)
.... +...+ . ...-+...-++.+|.||+...
T Consensus 313 l~~~~~~i~~~~~~~~~~~~~~~~~~~~D~~IL~Lg~LINL~E~s 357 (361)
T PF07814_consen 313 LGQQLGLIVTSFFCVLSLPNYVPEESSFDILILALGLLINLVEHS 357 (361)
T ss_pred hccchHHHHHhhcccccccccccccccchHHHHHHHhHHHheeeC
Confidence 2222 11111 1 123345667788888887643
No 208
>PF11698 V-ATPase_H_C: V-ATPase subunit H; InterPro: IPR011987 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. This entry represents the C-terminal domain of subunit H (also known as Vma13p) found in the V1 complex of V-ATPases. This subunit has a regulatory function, being responsible for activating ATPase activity and coupling ATPase activity to proton flow []. The yeast enzyme contains five motifs similar to the HEAT or Armadillo repeats seen in the importins, and can be divided into two distinct domains: a large N-terminal domain consisting of stacked alpha helices, and a smaller C-terminal alpha-helical domain with a similar superhelical topology to an armadillo repeat []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0016820 hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances, 0015991 ATP hydrolysis coupled proton transport, 0000221 vacuolar proton-transporting V-type ATPase, V1 domain; PDB: 1HO8_A.
Probab=95.35 E-value=0.054 Score=44.53 Aligned_cols=72 Identities=21% Similarity=0.301 Sum_probs=58.8
Q ss_pred ChHHHHHHHhccccCCCccchhHHHHHHHHHHHHHhhcCchhhhHHHhcCCcHHHHHhhcCCCHHHHHHHHHHHHHhhc
Q 005044 158 ALSHLVNLLKRHMDSNCSRAVNSVIRRAADAITNLAHENSSIKTRVRMEGGIPPLVELLEFTDTKVQRAAAGALRTLAF 236 (717)
Q Consensus 158 ~i~~L~~lL~~~~~~~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~L~~ 236 (717)
.+..|+.+|..+.+. .+...|+.=|+.++...|..+..+-+.|+-..++.++.++|++|+..|+.++-.+..
T Consensus 44 llk~L~~lL~~s~d~-------~~laVac~Dig~~vr~~p~gr~ii~~lg~K~~vM~Lm~h~d~eVr~eAL~avQklm~ 115 (119)
T PF11698_consen 44 LLKKLIKLLDKSDDP-------TTLAVACHDIGEFVRHYPNGRNIIEKLGAKERVMELMNHEDPEVRYEALLAVQKLMV 115 (119)
T ss_dssp HHHHHHHHH-SHHHH-------HHHHHHHHHHHHHHHH-GGGHHHHHHHSHHHHHHHHTS-SSHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHccCCCc-------ceeehhhcchHHHHHHChhHHHHHHhcChHHHHHHHhcCCCHHHHHHHHHHHHHHHH
Confidence 478899999555432 778889999999999999988888788888999999999999999999999987754
No 209
>KOG2714 consensus SETA binding protein SB1 and related proteins, contain BTB/POZ domain [General function prediction only]
Probab=95.34 E-value=0.067 Score=53.41 Aligned_cols=85 Identities=26% Similarity=0.322 Sum_probs=69.7
Q ss_pred EEEEEcCeEeehhHHHHhhcc--HHHHHhhcCCCCCCCCcc--eEcCCCCHHHHHHHHHHHhcCccccchhhHHHHHH-H
Q 005044 552 VTFLVEGRRFYAHRICLLASS--DAFRAMFDGGYREKDARD--IEIPNIRWEVFELMMRFIYTGSVDVTLDIAQDLLR-A 626 (717)
Q Consensus 552 v~~~~~~~~~~~h~~il~~~s--~~f~~~~~~~~~e~~~~~--i~l~~~~~~~~~~~l~~~Yt~~~~~~~~~~~~ll~-~ 626 (717)
|.+.|+|+.|...+.-|+-.. .||-++++++|.-.+.+. |.+ |=+|+.|..+|+|+-||+++++......++- =
T Consensus 13 V~lNVGGriF~Ts~qTL~~~~~DSffsaL~s~~~~s~~~~~~~iFI-DRDPdlFaviLn~LRTg~L~~~g~~~~~llhdE 91 (465)
T KOG2714|consen 13 VKLNVGGRIFETSAQTLTWIPRDSFFSALLSGRINSLKDESGAIFI-DRDPDLFAVILNLLRTGDLDASGVFPERLLHDE 91 (465)
T ss_pred EEEecCceEEecchhhhhcCCcchHHHHHhcCccccccCCCCceEe-cCCchHHHHHHHHHhcCCCCCccCchhhhhhhh
Confidence 678999999999999987665 699999998886554443 544 6799999999999999999997666655555 8
Q ss_pred HHhhChHhHHH
Q 005044 627 ADQYLLEGLKR 637 (717)
Q Consensus 627 A~~~~~~~l~~ 637 (717)
|.+|++..|..
T Consensus 92 A~fYGl~~llr 102 (465)
T KOG2714|consen 92 AMFYGLTPLLR 102 (465)
T ss_pred hhhcCcHHHHH
Confidence 99999988876
No 210
>KOG2274 consensus Predicted importin 9 [Intracellular trafficking, secretion, and vesicular transport; Nuclear structure]
Probab=95.30 E-value=1.6 Score=48.29 Aligned_cols=170 Identities=17% Similarity=0.166 Sum_probs=106.7
Q ss_pred CChHHHHHhhcCCCCCccccCCCccchHHHhHHHHHHHHhc-CChhhHHHHHhCCChHHHHHHHhccccCCCccchhHHH
Q 005044 104 GAVPALVKHLQAPPTSEADRNLKPFEHEVEKGSAFALGLLA-VKPEHQQLIVDNGALSHLVNLLKRHMDSNCSRAVNSVI 182 (717)
Q Consensus 104 g~i~~L~~lL~~~~~~~~~~~~~~~~~~v~~~a~~~L~~l~-~~~~~~~~~~~~~~i~~L~~lL~~~~~~~~~~~~~~~~ 182 (717)
+++..|.++....+. ++....+.+|...+ -+|+.. ...+....|....+.....+++ .+.
T Consensus 530 ~ild~L~qlas~~s~------------evl~llmE~Ls~vv~~dpef~-as~~skI~P~~i~lF~k~s~DP------~V~ 590 (1005)
T KOG2274|consen 530 MILDGLLQLASKSSD------------EVLVLLMEALSSVVKLDPEFA-ASMESKICPLTINLFLKYSEDP------QVA 590 (1005)
T ss_pred HHHHHHHHHcccccH------------HHHHHHHHHHHHHhccChhhh-hhhhcchhHHHHHHHHHhcCCc------hHH
Confidence 445666666665555 88889999999998 666653 3345566777777665544432 455
Q ss_pred HHHHHHHHHHhhcCchhhhHHHhcCCcHHHHHhhcCCC----HHHHHHHHHHHHHhhccChhhHHHHHhcCCHHHHHHH-
Q 005044 183 RRAADAITNLAHENSSIKTRVRMEGGIPPLVELLEFTD----TKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILM- 257 (717)
Q Consensus 183 ~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~----~~v~~~a~~~L~~L~~~~~~~~~~~~~~g~i~~L~~l- 257 (717)
..+-.++..++.. ..+... ...-.+|.++..+..++ +.....++..|..+....+.......-.-++|.+.+.
T Consensus 591 ~~~qd~f~el~q~-~~~~g~-m~e~~iPslisil~~~~~~~~~~l~~~aidvLttvvr~tp~pL~~~l~~~~FpaVak~t 668 (1005)
T KOG2274|consen 591 SLAQDLFEELLQI-AANYGP-MQERLIPSLISVLQLNADKAPAGLCAIAIDVLTTVLRNTPSPLPNLLICYAFPAVAKIT 668 (1005)
T ss_pred HHHHHHHHHHHHH-HHhhcc-hHHHHHHHHHHHHcCcccccCchhhHHHHHHHHHHHhcCCCCccHHHHHHHhHHhHhhe
Confidence 5555566666541 111111 12346899999997765 5677777777777766554443333333467777775
Q ss_pred HcCCCHHHHHHHHHHHHHhhcCChHHHHHHHHcCChH
Q 005044 258 LRSEDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQ 294 (717)
Q Consensus 258 l~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~l~ 294 (717)
+.++|.++...+-.+|+.+.....+........++..
T Consensus 669 lHsdD~~tlQ~~~EcLra~Is~~~eq~~t~~~e~g~~ 705 (1005)
T KOG2274|consen 669 LHSDDHETLQNATECLRALISVTLEQLLTWHDEPGHN 705 (1005)
T ss_pred eecCChHHHHhHHHHHHHHHhcCHHHHHhhccCCCcc
Confidence 4567888999999999998766555444444444433
No 211
>KOG4653 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.29 E-value=0.52 Score=51.68 Aligned_cols=212 Identities=17% Similarity=0.158 Sum_probs=129.1
Q ss_pred HHHhHHHHHHHHhcCChhhHHHHHhCCChHHHHHHHhccccCCCccchhHHHHHHHHHHHHHhhcCchhhhHHHhcCCcH
Q 005044 131 EVEKGSAFALGLLAVKPEHQQLIVDNGALSHLVNLLKRHMDSNCSRAVNSVIRRAADAITNLAHENSSIKTRVRMEGGIP 210 (717)
Q Consensus 131 ~v~~~a~~~L~~l~~~~~~~~~~~~~~~i~~L~~lL~~~~~~~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~ 210 (717)
-++..++..|..+....+....+...+++...++.|++.++ -+-..|+..+..||.-.+ ..++|
T Consensus 742 pik~~gL~~l~~l~e~r~~~~~~~~ekvl~i~ld~Lkdeds--------yvyLnaI~gv~~Lcevy~--------e~il~ 805 (982)
T KOG4653|consen 742 PIKGYGLQMLRHLIEKRKKATLIQGEKVLAIALDTLKDEDS--------YVYLNAIRGVVSLCEVYP--------EDILP 805 (982)
T ss_pred cchHHHHHHHHHHHHhcchhhhhhHHHHHHHHHHHhcccCc--------eeeHHHHHHHHHHHHhcc--------hhhHH
Confidence 67889999999999555666667778899999999998877 677888888888887433 34566
Q ss_pred HHHH-hhcC---CCHHHHHHHHHHHHHhhccChhhHHHHHhcCCHHHHHHHHcCCCHHHHHHHHHHHHHhhcCChHHHHH
Q 005044 211 PLVE-LLEF---TDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSEDSAIHYEAVGVIGNLVHSSPNIKKE 286 (717)
Q Consensus 211 ~L~~-ll~~---~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~ 286 (717)
.+.. .... ..++.+..+-.++.+++..-.+...... .-++..++..+++++...|..++..+++++.........
T Consensus 806 dL~e~Y~s~k~k~~~d~~lkVGEai~k~~qa~Gel~~~y~-~~Li~tfl~gvrepd~~~RaSS~a~lg~Lcq~~a~~vsd 884 (982)
T KOG4653|consen 806 DLSEEYLSEKKKLQTDYRLKVGEAILKVAQALGELVFKYK-AVLINTFLSGVREPDHEFRASSLANLGQLCQLLAFQVSD 884 (982)
T ss_pred HHHHHHHhcccCCCccceehHHHHHHHHHHHhccHHHHHH-HHHHHHHHHhcCCchHHHHHhHHHHHHHHHHHHhhhhhH
Confidence 6766 3322 2245555555777777642222111111 135666777778787788999999999997643322122
Q ss_pred HHHcCChHHHHHhhc-cCChHHHHHHHHHHHHHhcCChhhHHHHH---hcCChHHHHHHhcC-CCHHHHHHHHHHHHHh
Q 005044 287 VLAAGALQPVIGLLS-SCCSESQREAALLLGQFAATDSDCKVHIV---QRGAVRPLIEMLQS-PDVQLREMSAFALGRL 360 (717)
Q Consensus 287 ~~~~g~l~~L~~ll~-~~~~~~~~~a~~~L~~l~~~~~~~~~~l~---~~~~l~~L~~~l~~-~~~~v~~~a~~~L~~l 360 (717)
.. ...+..++.+.. +++.-+|+.|+..+..+-.+.......+. .......+.+..+. ++..++..++.++-.+
T Consensus 885 ~~-~ev~~~Il~l~~~d~s~~vRRaAv~li~~lL~~tg~dlLpilr~~l~Dl~~tl~~~vr~~~dd~~klhaql~leei 962 (982)
T KOG4653|consen 885 FF-HEVLQLILSLETTDGSVLVRRAAVHLLAELLNGTGEDLLPILRLLLIDLDETLLSYVRQHDDDGLKLHAQLCLEEI 962 (982)
T ss_pred HH-HHHHHHHHHHHccCCchhhHHHHHHHHHHHHhccchhhHHHHHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHH
Confidence 11 113334444444 45678899999988887543322111111 12334445555544 3445566666555443
No 212
>COG5656 SXM1 Importin, protein involved in nuclear import [Posttranslational modification, protein turnover, chaperones]
Probab=95.28 E-value=5.6 Score=43.34 Aligned_cols=297 Identities=13% Similarity=0.071 Sum_probs=151.2
Q ss_pred HHHHHHHHHHHhhc--C-hhhHHHHHhCCChHHHHHhhcCCCCCccccCCCccchHHHhHHHHHHHHhcCChhhHHHHHh
Q 005044 79 AAKRATHVLAELAK--N-EEVVNWIVEGGAVPALVKHLQAPPTSEADRNLKPFEHEVEKGSAFALGLLAVKPEHQQLIVD 155 (717)
Q Consensus 79 ~~~~a~~~L~~l~~--~-~~~~~~~~~~g~i~~L~~lL~~~~~~~~~~~~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~ 155 (717)
..+.|++.+.++.+ + +....-+.+.=+++.++..+++... -++.+|+..+..+. .+..+...-
T Consensus 432 q~egalr~lasi~s~itk~sp~an~me~fiv~hv~P~f~s~yg------------fL~Srace~is~~e--eDfkd~~il 497 (970)
T COG5656 432 QAEGALRLLASIKSFITKMSPAANVMEYFIVNHVIPAFRSNYG------------FLKSRACEFISTIE--EDFKDNGIL 497 (970)
T ss_pred HHhhHHHHHHHHHHHhccCchHHHHHHHHHHHHhhHhhcCccc------------chHHHHHHHHHHHH--HhcccchHH
Confidence 45667777777655 2 3333445555567778888887766 78999999999995 333333333
Q ss_pred CCChHHHHHHHhccccCCCccchhHHHHHHHHHHHHHhhcCchhhhHHHh--cCCcHHHHHhhcCCCHHHHHHHHHHHHH
Q 005044 156 NGALSHLVNLLKRHMDSNCSRAVNSVIRRAADAITNLAHENSSIKTRVRM--EGGIPPLVELLEFTDTKVQRAAAGALRT 233 (717)
Q Consensus 156 ~~~i~~L~~lL~~~~~~~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~--~~~i~~L~~ll~~~~~~v~~~a~~~L~~ 233 (717)
..+.+...+.+++++- .++-.|+-++.-+..++ .....+.. .+.++.|+.+-+.-+.++...+...+..
T Consensus 498 l~aye~t~ncl~nn~l--------pv~ieAalAlq~fi~~~-q~h~k~sahVp~tmekLLsLSn~feiD~LS~vMe~fVe 568 (970)
T COG5656 498 LEAYENTHNCLKNNHL--------PVMIEAALALQFFIFNE-QSHEKFSAHVPETMEKLLSLSNTFEIDPLSMVMESFVE 568 (970)
T ss_pred HHHHHHHHHHHhcCCc--------chhhhHHHHHHHHHhch-hhhHHHHhhhhHHHHHHHHhcccccchHHHHHHHHHHH
Confidence 3445666677776444 77888888888887744 33333322 1122233333333333333333333221
Q ss_pred -hhccChhhHHHHHhcCCHHHH----HHHHcCCC------HHHHHHHHHHHHHhhc------CChHHHHHHHHcCChHHH
Q 005044 234 -LAFKNDENKNQIVECNALPTL----ILMLRSED------SAIHYEAVGVIGNLVH------SSPNIKKEVLAAGALQPV 296 (717)
Q Consensus 234 -L~~~~~~~~~~~~~~g~i~~L----~~ll~~~~------~~v~~~a~~~L~~l~~------~~~~~~~~~~~~g~l~~L 296 (717)
.+..-......++. .++..+ ..++..++ ++-+..|.+.|..+.. ..+..-+ -......|.+
T Consensus 569 ~fseELspfa~eLa~-~Lv~qFlkiaq~l~ens~d~~s~vDDKqmaasGiL~T~~smiLSlen~p~vLk-~le~slypvi 646 (970)
T COG5656 569 YFSEELSPFAPELAG-SLVRQFLKIAQSLLENSSDTSSVVDDKQMAASGILRTIESMILSLENRPLVLK-YLEVSLYPVI 646 (970)
T ss_pred HhHHhhchhHHHHHH-HHHHHHHHHHHHHHcCCccccccccHHHHHHHHHHHHHHHHHHhcccchHHHH-HHHHHHHHHH
Confidence 11111111122221 123322 23333221 1334555555555421 1111111 1223445555
Q ss_pred HHhhccCChHHHHHHHHHHHHHhcCChhhHHHHHhcCChHHHHHHhcCCCH-HHHHHHHHHHHHhhcCCCCchhhHhcCC
Q 005044 297 IGLLSSCCSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQSPDV-QLREMSAFALGRLAQDMHNQAGIAHNGG 375 (717)
Q Consensus 297 ~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~l~~~~~l~~L~~~l~~~~~-~v~~~a~~~L~~l~~~~~~~~~l~~~~~ 375 (717)
--.+.+...+.-.+|+..+.+..-...+. .-+.-|+.+.+.+++.+... ...+.+.-++.|+.... +..+.+.+.
T Consensus 647 ~Filkn~i~dfy~Ea~dildg~tf~skeI--~pimwgi~Ell~~~l~~~~t~~y~ee~~~al~nfityG--~~ef~~~~~ 722 (970)
T COG5656 647 SFILKNEISDFYQEALDILDGYTFMSKEI--EPIMWGIFELLLNLLIDEITAVYSEEVADALDNFITYG--KTEFMDAGI 722 (970)
T ss_pred HHHHhhhHHHHHHHHHHHHhhhhHHHHHh--hhhhhHHHHHHHhcccccchhhhHHHHHHHHHHHHHhC--ccccccccc
Confidence 55666666777888888777764211111 12224555666666666553 56677888999988643 233444443
Q ss_pred hHH-H----HHhhcCCCh--hHHHHHHHHHHhccCC
Q 005044 376 LVP-L----LKLLDSKNG--SLQHNAAFALYGLADN 404 (717)
Q Consensus 376 l~~-L----~~ll~~~~~--~v~~~a~~~L~~l~~~ 404 (717)
... + ...+.+.+. .-...+|..+..+..+
T Consensus 723 y~~i~~eI~~~~l~sE~n~l~D~~~vc~i~e~l~Ln 758 (970)
T COG5656 723 YGSICSEISKLCLCSEENFLEDFIGVCRIIESLILN 758 (970)
T ss_pred hhHHHHHHHHHHHcchhhhHHHHHHHHHHHHHHHHH
Confidence 222 2 233333332 4456677777666543
No 213
>PF03931 Skp1_POZ: Skp1 family, tetramerisation domain; InterPro: IPR016073 SKP1 (together with SKP2) was identified as an essential component of the cyclin A-CDK2 S phase kinase complex []. It was found to bind several F-box containing proteins (e.g., Cdc4, Skp2, cyclin F) and to be involved in the ubiquitin protein degradation pathway. A yeast homologue of SKP1 (P52286) was identified in the centromere bound kinetochore complex [] and is also involved in the ubiquitin pathway []. In Dictyostelium discoideum (Slime mold) FP21 was shown to be glycosylated in the cytosol and has homology to SKP1 []. This entry represents a POZ domain with a core structure consisting of beta(2)/alpha(2)/beta(2)/alpha(2) in two layers, alpha/beta. This domain is found at the N-terminal of SKP1 proteins [] as well as in subunit D of the centromere DNA-binding protein complex Cbf3 []. ; GO: 0006511 ubiquitin-dependent protein catabolic process; PDB: 1LM8_C 2XAI_E 1VCB_E 3ZRC_K 3ZRF_E 3DCG_B 2C9W_C 1LQB_B 2IZV_C 1HV2_A ....
Probab=95.24 E-value=0.087 Score=38.15 Aligned_cols=51 Identities=18% Similarity=0.354 Sum_probs=41.6
Q ss_pred cCeEeehhHHHHhhccHHHHHhhcCCCCCCCCcceEcCCCCHHHHHHHHHHHhc
Q 005044 557 EGRRFYAHRICLLASSDAFRAMFDGGYREKDARDIEIPNIRWEVFELMMRFIYT 610 (717)
Q Consensus 557 ~~~~~~~h~~il~~~s~~f~~~~~~~~~e~~~~~i~l~~~~~~~~~~~l~~~Yt 610 (717)
+|..|.+.+.+.. .|..++.|+.+...+.. .|++++++..+++.+++|++-
T Consensus 9 Dg~~f~V~~~~a~-~S~~i~~ml~~~~~~~~--~Ipl~~v~~~~L~kViewc~~ 59 (62)
T PF03931_consen 9 DGQEFEVSREAAK-QSKTIKNMLEDLGDEDE--PIPLPNVSSRILKKVIEWCEH 59 (62)
T ss_dssp TSEEEEEEHHHHT-TSHHHHHHHHCTCCCGT--EEEETTS-HHHHHHHHHHHHH
T ss_pred CCCEEEeeHHHHH-HhHHHHHHHhhhccccc--ccccCccCHHHHHHHHHHHHh
Confidence 6789999999877 99999999975433222 799999999999999999963
No 214
>KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning]
Probab=95.20 E-value=3.4 Score=45.73 Aligned_cols=347 Identities=15% Similarity=0.146 Sum_probs=173.3
Q ss_pred HHHHHHHHhcCChhhHHHHHhCCChHHHHHHHhccccCCCccchhHHHHHHHHHHHHHhhcCchhhhHHHhcCCcHHHHH
Q 005044 135 GSAFALGLLAVKPEHQQLIVDNGALSHLVNLLKRHMDSNCSRAVNSVIRRAADAITNLAHENSSIKTRVRMEGGIPPLVE 214 (717)
Q Consensus 135 ~a~~~L~~l~~~~~~~~~~~~~~~i~~L~~lL~~~~~~~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ 214 (717)
.++++|.-|..-.+.-..+.+.|. ..++-++.+.....+. .+.-.++..|+.|+. +......+++.+++..|+.
T Consensus 328 ~~~q~l~~lgey~e~lpv~~~~g~-~~~~~~~~~~~q~~d~----~l~~~~~k~~~~l~~-h~kfa~~fv~~~gi~kll~ 401 (1516)
T KOG1832|consen 328 YCIQCLEILGEYVEVLPVLHEKGV-DVCIVLLERTSQLDDS----PLLPDVMKLICALAA-HRKFAAMFVERRGILKLLA 401 (1516)
T ss_pred HHHHHHHHHHhHHHHHHHHHHhCc-hhhhhhhhhhhccccc----cccHHHHHHHHHHHH-hhHHHHHHHHhhhhHHHhc
Confidence 356666665544455555555554 4333333322111111 455566777777776 4556667888888877765
Q ss_pred hhcCCCHHHHHHHHHHHHHhhccChhhHHHHH------hcCCHHHHHHHHcCCCHHHHHHHHHHHHHhhcCChHHHHHHH
Q 005044 215 LLEFTDTKVQRAAAGALRTLAFKNDENKNQIV------ECNALPTLILMLRSEDSAIHYEAVGVIGNLVHSSPNIKKEVL 288 (717)
Q Consensus 215 ll~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~------~~g~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~ 288 (717)
.=+-+ +.-.....||+.+.. .....+.++ -..++..-+.++......-+.++.......... -.....+-
T Consensus 402 vpr~s--~~~~g~s~cly~~~~-~q~~mervc~~p~~v~~~vv~~~~~l~~cs~~~~~~~~~~ff~~~f~f-rail~~fd 477 (1516)
T KOG1832|consen 402 VPRVS--ETFYGLSSCLYTIGS-LQGIMERVCALPLVVIHQVVKLAIELLDCSQDQARKNSALFFAAAFVF-RAILDAFD 477 (1516)
T ss_pred CCCch--hhhhhHHHHHHHHhh-hhhHHHHHhhccHHHHHHHHHHHHHHHhcchhhccchHHHHHHHHHHH-HHHHHHHh
Confidence 44322 223344456666664 232222222 234556666777655544444443333222110 11122333
Q ss_pred HcCChHHHHHhhccC--------C---hH--------HHHHHHHHHHHHhc-----CChhhHHHHHhcCChHHHHHHhcC
Q 005044 289 AAGALQPVIGLLSSC--------C---SE--------SQREAALLLGQFAA-----TDSDCKVHIVQRGAVRPLIEMLQS 344 (717)
Q Consensus 289 ~~g~l~~L~~ll~~~--------~---~~--------~~~~a~~~L~~l~~-----~~~~~~~~l~~~~~l~~L~~~l~~ 344 (717)
...++..|+.++++. + ++ .....|.++..--. .-+..+..-++.+..+..+.-+..
T Consensus 478 ~~d~l~~l~~~~~~~~~~~~~n~d~~l~e~~i~ss~Q~~~htC~alR~Yf~AHl~Ikve~~~k~~~~r~~~g~~~~~i~~ 557 (1516)
T KOG1832|consen 478 AQDSLQKLLAILKDAASVTGANTDRSLPEVMISSSKQMAFHTCFALRQYFRAHLLIKVESIRKSRISRGGVGSSMKNIRA 557 (1516)
T ss_pred hhhHHHHHHHHHHHHHHHhccCcCccccHHHhhhhhhhhhhhHHHHHHHHHHHHHHHHHhhhhhhcccCCCCcccccccc
Confidence 345666666666431 0 11 12234444443211 112223333344444444443322
Q ss_pred C------CHHHHHHHHHHHHHhhcCCC--------CchhhHhcCChHHHHHhhcC--------CChhHHHHHHHHHHhcc
Q 005044 345 P------DVQLREMSAFALGRLAQDMH--------NQAGIAHNGGLVPLLKLLDS--------KNGSLQHNAAFALYGLA 402 (717)
Q Consensus 345 ~------~~~v~~~a~~~L~~l~~~~~--------~~~~l~~~~~l~~L~~ll~~--------~~~~v~~~a~~~L~~l~ 402 (717)
+ .....++.+|.+-.+.+... ....+.+.+++..++++..- ...+....|+.+|.-+.
T Consensus 558 ~~~P~~~s~~~~e~I~~q~e~~~~~gp~f~~~~w~~aenflkls~v~~~L~l~~~~~~w~~~spR~d~~~~Al~vL~i~t 637 (1516)
T KOG1832|consen 558 AYKPLDISNEAVEAIFLQLEKDRRLGPTFVKAQWPAAENFLKLSGVVTMLELCQTPPVWRYLSPRHDLLQYALGVLHIVT 637 (1516)
T ss_pred CCCcchhhhhHHHHHHHHHHHHHHhChhhhhhcchHHHHHHHhHHHHHHHHHHhcCccccccCcchHHHHHHHhheeeeE
Confidence 1 12334455555554443222 22346677777777777632 22455667777777776
Q ss_pred CCCcchHHHHHhc--------CccccccchhHHhhhHHHHHHHHHHHHHHhhhchHHHHHHHHhhcchhHHHHHHHHHHh
Q 005044 403 DNEDNVADFIRVG--------GVQKLQDGEFIVQATKDCVAKTLKRLEEKIHGRVLNHLLYLMRVAEKGVQRRVALALAH 474 (717)
Q Consensus 403 ~~~~~~~~l~~~~--------~i~~L~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~L~~ll~~~~~~v~~~a~~aL~~ 474 (717)
.-+.....+...- ++..+++..... -.-.+|+++..|+.+|.|
T Consensus 638 ~iP~iq~~La~~~~~n~~aydGiaIiL~~a~g~-----------------------------~~i~Dpei~~~AL~vIin 688 (1516)
T KOG1832|consen 638 SIPDIQKALAHATLSNNRAYDGIAIILDAANGS-----------------------------NSIVDPEIIQPALNVIIN 688 (1516)
T ss_pred ecchHHHHHHHHHhhcccccCceEEEeeccccc-----------------------------ccccCHHHHHHHHhhhhe
Confidence 6666655555431 222222200000 000156666667766666
Q ss_pred ccCCCC-Cc-----------------------------------eeeecCCCHHHHHHHhcCCCch-----hhhhhHHHH
Q 005044 475 LCSPDD-QR-----------------------------------TIFIDGGGLELLLGLLGSTNPK-----QQLDGAVAL 513 (717)
Q Consensus 475 l~~~~~-~~-----------------------------------~~~~~~~~l~~L~~ll~~~~~~-----v~~~a~~~l 513 (717)
+.+.+. ++ ..+-..+||..|++|++..+|. +|.-|+.+|
T Consensus 689 cVc~pp~~r~s~i~~v~S~~g~~r~~l~~~~ks~~le~~l~~mw~~Vr~ndGIkiLl~Ll~~k~P~t~aD~IRalAc~~L 768 (1516)
T KOG1832|consen 689 CVCPPPTTRPSTIVAVGSQSGDRRIFLGAGTKSAKLEQVLRQMWEAVRGNDGIKILLKLLQYKNPPTTADCIRALACRVL 768 (1516)
T ss_pred eecCCCCcchhhhhhccccCCCccccccCCCchHHHHHHHHHHHHHHhcCccHHHHHHHHhccCCCCcHHHHHHHHHHHH
Confidence 654431 00 0122467899999999986664 678889999
Q ss_pred HHhhhcc
Q 005044 514 FKLANKA 520 (717)
Q Consensus 514 ~~L~~~~ 520 (717)
..|++++
T Consensus 769 ~GLaR~~ 775 (1516)
T KOG1832|consen 769 LGLARDD 775 (1516)
T ss_pred hccccCc
Confidence 9888864
No 215
>KOG2274 consensus Predicted importin 9 [Intracellular trafficking, secretion, and vesicular transport; Nuclear structure]
Probab=95.19 E-value=6.7 Score=43.76 Aligned_cols=216 Identities=14% Similarity=0.081 Sum_probs=138.6
Q ss_pred HHHHHHHHHHHHHhhcCchhhhHHHhcCCcHHHHHhh-cCCCHHHHHHHHHHHHHhhccChhhHHHHHhcCCHHHHHHHH
Q 005044 180 SVIRRAADAITNLAHENSSIKTRVRMEGGIPPLVELL-EFTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILML 258 (717)
Q Consensus 180 ~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll-~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~g~i~~L~~ll 258 (717)
.+...+.+.+...+.....+...+. .++...+..+ .+..+.++..|+.+++..+. ...... ...++++.|.++.
T Consensus 465 ~Ll~Ra~~~i~~fs~~~~~~~~~~~--~fl~~~v~~l~~~~~~~~ki~a~~~~~~~~~--~~vl~~-~~p~ild~L~qla 539 (1005)
T KOG2274|consen 465 FLLLRAFLTISKFSSSTVINPQLLQ--HFLNATVNALTMDVPPPVKISAVRAFCGYCK--VKVLLS-LQPMILDGLLQLA 539 (1005)
T ss_pred HHHHHHHHHHHHHHhhhccchhHHH--HHHHHHHHhhccCCCCchhHHHHHHHHhccC--ceeccc-cchHHHHHHHHHc
Confidence 4445777777766654333322211 1223334433 34456788888888887773 221111 1245777888888
Q ss_pred cCCCHHHHHHHHHHHHHhhcCChHHHHHHHHcCChHHHHHhhc--cCChHHHHHHHHHHHHHhcCChhhHHHHHhcCChH
Q 005044 259 RSEDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLS--SCCSESQREAALLLGQFAATDSDCKVHIVQRGAVR 336 (717)
Q Consensus 259 ~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~l~~L~~ll~--~~~~~~~~~a~~~L~~l~~~~~~~~~~l~~~~~l~ 336 (717)
...+.++......+|+..+.-+++. ....+..+.|.++.++. ++++.+...+-.++..++. ...+ ..-.....+|
T Consensus 540 s~~s~evl~llmE~Ls~vv~~dpef-~as~~skI~P~~i~lF~k~s~DP~V~~~~qd~f~el~q-~~~~-~g~m~e~~iP 616 (1005)
T KOG2274|consen 540 SKSSDEVLVLLMEALSSVVKLDPEF-AASMESKICPLTINLFLKYSEDPQVASLAQDLFEELLQ-IAAN-YGPMQERLIP 616 (1005)
T ss_pred ccccHHHHHHHHHHHHHHhccChhh-hhhhhcchhHHHHHHHHHhcCCchHHHHHHHHHHHHHH-HHHh-hcchHHHHHH
Confidence 8888999999999999998887765 44455667777777664 3455555555555555542 1111 1123345789
Q ss_pred HHHHHhcCCC----HHHHHHHHHHHHHhhcCCCC-chhhHhcCChHHHHHh-hcCCChhHHHHHHHHHHhccC
Q 005044 337 PLIEMLQSPD----VQLREMSAFALGRLAQDMHN-QAGIAHNGGLVPLLKL-LDSKNGSLQHNAAFALYGLAD 403 (717)
Q Consensus 337 ~L~~~l~~~~----~~v~~~a~~~L~~l~~~~~~-~~~l~~~~~l~~L~~l-l~~~~~~v~~~a~~~L~~l~~ 403 (717)
.+++.|..+. +.....++..|..+.++.++ -....-.-+.+++.+. +++++.....++..+|+.+..
T Consensus 617 slisil~~~~~~~~~~l~~~aidvLttvvr~tp~pL~~~l~~~~FpaVak~tlHsdD~~tlQ~~~EcLra~Is 689 (1005)
T KOG2274|consen 617 SLISVLQLNADKAPAGLCAIAIDVLTTVLRNTPSPLPNLLICYAFPAVAKITLHSDDHETLQNATECLRALIS 689 (1005)
T ss_pred HHHHHHcCcccccCchhhHHHHHHHHHHHhcCCCCccHHHHHHHhHHhHhheeecCChHHHHhHHHHHHHHHh
Confidence 9999998765 66777888888888875443 3444555567777665 578888999999999988854
No 216
>PF02985 HEAT: HEAT repeat; InterPro: IPR000357 The HEAT repeat is a tandemly repeated, 37-47 amino acid long module occurring in a number of cytoplasmic proteins, including the four name-giving proteins huntingtin, elongation factor 3 (EF3), the 65 Kd alpha regulatory subunit of protein phosphatase 2A (PP2A) and the yeast PI3-kinase TOR1 []. Arrays of HEAT repeats consists of 3 to 36 units forming a rod-like helical structure and appear to function as protein-protein interaction surfaces. It has been noted that many HEAT repeat-containing proteins are involved in intracellular transport processes. In the crystal structure of PP2A PR65/A [], the HEAT repeats consist of pairs of antiparallel alpha helices [].; GO: 0005515 protein binding; PDB: 3FGA_A 2PF4_C 2IAE_A 2BKU_D 3EA5_B 3ND2_A 2BPT_A 2NYL_A 2NPP_D 2PKG_B ....
Probab=95.15 E-value=0.032 Score=33.74 Aligned_cols=30 Identities=27% Similarity=0.517 Sum_probs=26.1
Q ss_pred ChHHHHHHhcCCCHHHHHHHHHHHHHhhcC
Q 005044 334 AVRPLIEMLQSPDVQLREMSAFALGRLAQD 363 (717)
Q Consensus 334 ~l~~L~~~l~~~~~~v~~~a~~~L~~l~~~ 363 (717)
++|.++++++++++.||.+|+.+|+.++..
T Consensus 1 llp~l~~~l~D~~~~VR~~a~~~l~~i~~~ 30 (31)
T PF02985_consen 1 LLPILLQLLNDPSPEVRQAAAECLGAIAEH 30 (31)
T ss_dssp HHHHHHHHHT-SSHHHHHHHHHHHHHHHHT
T ss_pred CHHHHHHHcCCCCHHHHHHHHHHHHHHHhh
Confidence 368899999999999999999999999753
No 217
>PF02985 HEAT: HEAT repeat; InterPro: IPR000357 The HEAT repeat is a tandemly repeated, 37-47 amino acid long module occurring in a number of cytoplasmic proteins, including the four name-giving proteins huntingtin, elongation factor 3 (EF3), the 65 Kd alpha regulatory subunit of protein phosphatase 2A (PP2A) and the yeast PI3-kinase TOR1 []. Arrays of HEAT repeats consists of 3 to 36 units forming a rod-like helical structure and appear to function as protein-protein interaction surfaces. It has been noted that many HEAT repeat-containing proteins are involved in intracellular transport processes. In the crystal structure of PP2A PR65/A [], the HEAT repeats consist of pairs of antiparallel alpha helices [].; GO: 0005515 protein binding; PDB: 3FGA_A 2PF4_C 2IAE_A 2BKU_D 3EA5_B 3ND2_A 2BPT_A 2NYL_A 2NPP_D 2PKG_B ....
Probab=95.04 E-value=0.038 Score=33.41 Aligned_cols=29 Identities=21% Similarity=0.450 Sum_probs=25.4
Q ss_pred CHHHHHHHHcCCCHHHHHHHHHHHHHhhc
Q 005044 250 ALPTLILMLRSEDSAIHYEAVGVIGNLVH 278 (717)
Q Consensus 250 ~i~~L~~ll~~~~~~v~~~a~~~L~~l~~ 278 (717)
++|.+++++++++++||..|+.+|+.++.
T Consensus 1 llp~l~~~l~D~~~~VR~~a~~~l~~i~~ 29 (31)
T PF02985_consen 1 LLPILLQLLNDPSPEVRQAAAECLGAIAE 29 (31)
T ss_dssp HHHHHHHHHT-SSHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHcCCCCHHHHHHHHHHHHHHHh
Confidence 36889999999999999999999999864
No 218
>KOG1020 consensus Sister chromatid cohesion protein SCC2/Nipped-B [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=95.00 E-value=10 Score=44.93 Aligned_cols=126 Identities=13% Similarity=0.173 Sum_probs=79.0
Q ss_pred HHHHHHHHHHHHHHhhc-ChhhHH-HHHhCCChHHHHHhhcCCCCCccccCCCccchHHHhHHHHHHHHhc-CChhhHHH
Q 005044 76 DRAAAKRATHVLAELAK-NEEVVN-WIVEGGAVPALVKHLQAPPTSEADRNLKPFEHEVEKGSAFALGLLA-VKPEHQQL 152 (717)
Q Consensus 76 ~~~~~~~a~~~L~~l~~-~~~~~~-~~~~~g~i~~L~~lL~~~~~~~~~~~~~~~~~~v~~~a~~~L~~l~-~~~~~~~~ 152 (717)
...+|-.|+++|..+.. +|.... ..++.| +-.=+.+... .||+.|+..+|... ..++.-..
T Consensus 829 ~ialRtkAlKclS~ive~Dp~vL~~~dvq~~----Vh~R~~Dssa------------sVREAaldLvGrfvl~~~e~~~q 892 (1692)
T KOG1020|consen 829 AIALRTKALKCLSMIVEADPSVLSRPDVQEA----VHGRLNDSSA------------SVREAALDLVGRFVLSIPELIFQ 892 (1692)
T ss_pred hHHHHHHHHHHHHHHHhcChHhhcCHHHHHH----HHHhhccchh------------HHHHHHHHHHhhhhhccHHHHHH
Confidence 55689999999999888 553221 222222 2222334444 89999999999887 66665322
Q ss_pred HHhCCChHHHHHHHhccccCCCccchhHHHHHHHHHHHHHhhcCchhhhHHHhcCCcHHHHHhhc---CCCHHHHHHHHH
Q 005044 153 IVDNGALSHLVNLLKRHMDSNCSRAVNSVIRRAADAITNLAHENSSIKTRVRMEGGIPPLVELLE---FTDTKVQRAAAG 229 (717)
Q Consensus 153 ~~~~~~i~~L~~lL~~~~~~~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~---~~~~~v~~~a~~ 229 (717)
.. ..+..-+.+..- .++..++.++..+|...|..... +..+.++++ +....++..++.
T Consensus 893 yY-----~~i~erIlDtgv--------sVRKRvIKIlrdic~e~pdf~~i------~~~cakmlrRv~DEEg~I~kLv~e 953 (1692)
T KOG1020|consen 893 YY-----DQIIERILDTGV--------SVRKRVIKILRDICEETPDFSKI------VDMCAKMLRRVNDEEGNIKKLVRE 953 (1692)
T ss_pred HH-----HHHHhhcCCCch--------hHHHHHHHHHHHHHHhCCChhhH------HHHHHHHHHHhccchhHHHHHHHH
Confidence 22 233333333322 89999999999999877765432 234455553 333448888888
Q ss_pred HHHHhhc
Q 005044 230 ALRTLAF 236 (717)
Q Consensus 230 ~L~~L~~ 236 (717)
++.++..
T Consensus 954 tf~klWF 960 (1692)
T KOG1020|consen 954 TFLKLWF 960 (1692)
T ss_pred HHHHHhc
Confidence 8888764
No 219
>KOG1566 consensus Conserved protein Mo25 [Function unknown]
Probab=94.72 E-value=2.9 Score=40.59 Aligned_cols=204 Identities=13% Similarity=0.126 Sum_probs=142.5
Q ss_pred HHHhcCCcHHHHHhhcCCCHHHHHHHHHHHHHhhccChhhHH----HHH-hcCCHHHHHHHHcCCCHHHHHHHHHHHHHh
Q 005044 202 RVRMEGGIPPLVELLEFTDTKVQRAAAGALRTLAFKNDENKN----QIV-ECNALPTLILMLRSEDSAIHYEAVGVIGNL 276 (717)
Q Consensus 202 ~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~L~~~~~~~~~----~~~-~~g~i~~L~~ll~~~~~~v~~~a~~~L~~l 276 (717)
.+...|.+..++..+..-+.+-+..++.+..++-...-..+. .+. ...++..|+.--.. .+++...+-..+...
T Consensus 74 ef~~~~~l~~lI~~l~~l~fE~rkD~~~ifnnllr~qvgtr~~tv~Yl~t~~e~~~~lv~~~~~-~~~iaL~cg~mlrEc 152 (342)
T KOG1566|consen 74 EFYNADVLSLLIQHLPKLEFESRKDVLQIFNNLLRRQVGTRSPTVEYLETNPEILDNLVKGYEN-TPEIALTCGNMLREC 152 (342)
T ss_pred HHHhCCchHHHHHhhhcccchhhhHHHHHHHHHHHhhcCCcchHHHHHHhCHHHHHHHHhhhcc-chHHHHHHHHHHHHH
Confidence 456678888999999888888889998888888653222211 121 22334444443111 367777776777666
Q ss_pred hcCChHHHHHHHHcCChHHHHHhhccCChHHHHHHHHHHHHHhcCChhhHHHHHhcCC----hHHHHHHhcCCCHHHHHH
Q 005044 277 VHSSPNIKKEVLAAGALQPVIGLLSSCCSESQREAALLLGQFAATDSDCKVHIVQRGA----VRPLIEMLQSPDVQLREM 352 (717)
Q Consensus 277 ~~~~~~~~~~~~~~g~l~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~l~~~~~----l~~L~~~l~~~~~~v~~~ 352 (717)
.. .+...+.+....-......+++.+.-++...|..+...+..........+...+. .+.--.++++.+.-++..
T Consensus 153 ir-he~LakiiL~s~~~~~FF~~vq~p~FdiasdA~~tfK~llt~Hk~~vaEfl~~n~d~ff~e~~~~Ll~s~Nyvtkrq 231 (342)
T KOG1566|consen 153 IR-HEFLAKIILESTNFEKFFLYVQLPNFDIASDAFSTFKELLTRHKSVVAEFLIRNYDNFFAEVYEKLLRSENYVTKRQ 231 (342)
T ss_pred Hh-hHHHHHHHHcchhHHHHHHHHhccchHHHHHHHHHHHHHHHHhHHHHHHHHHhChhhhHHHHHHHHhcccceehHHH
Confidence 54 4566677778888888888888888888888888877775433333334443332 333666778899999999
Q ss_pred HHHHHHHhhcCCCCchhhH----hcCChHHHHHhhcCCChhHHHHHHHHHHhccCCCcc
Q 005044 353 SAFALGRLAQDMHNQAGIA----HNGGLVPLLKLLDSKNGSLQHNAAFALYGLADNEDN 407 (717)
Q Consensus 353 a~~~L~~l~~~~~~~~~l~----~~~~l~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~ 407 (717)
+..+++.+..+.+|...+. ....+..++.+|.++...+|-.|.....-...++..
T Consensus 232 s~kllg~llldr~N~~~M~kYiss~enLKlmM~llrdkskniQ~eAFhvFKvfvAnpnK 290 (342)
T KOG1566|consen 232 SLKLLGELLLDRSNSAVMTKYISSPENLKLMMNLLRDKSKNIQLEAFHVFKVFVANPNK 290 (342)
T ss_pred HHHhHHHHHhCCCcHHHHHHHhcCHHHHHHHHHHhhCccccchHHHHHHHHHHhcCCCC
Confidence 9999999998888765443 335678889999999999999999998888766543
No 220
>PF05918 API5: Apoptosis inhibitory protein 5 (API5); InterPro: IPR008383 This family consists of apoptosis inhibitory protein 5 (API5) sequences from several organisms. Apoptosis or programmed cell death is a physiological form of cell death that occurs in embryonic development and organ formation. It is characterised by biochemical and morphological changes such as DNA fragmentation and cell volume shrinkage. API5 is an anti apoptosis gene located in Homo sapiens chromosome 11, whose expression prevents the programmed cell death that occurs upon the deprivation of growth factors [,].; PDB: 3U0R_A 3V6A_A.
Probab=94.71 E-value=0.75 Score=49.14 Aligned_cols=174 Identities=15% Similarity=0.074 Sum_probs=101.6
Q ss_pred HHHHhhcCCCHHHHHHHHHHHHHhhccChhhHHHHHhcCCHHHHHHHHcCCCHHHHHHHHHHHHHhhcCChHHHHHHHHc
Q 005044 211 PLVELLEFTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSEDSAIHYEAVGVIGNLVHSSPNIKKEVLAA 290 (717)
Q Consensus 211 ~L~~ll~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~ 290 (717)
.++...+ ++...+..|+..+.......|+.... ++..++.+..+++..||..|+..|..+|..+++....
T Consensus 27 ~il~~~k-g~~k~K~Laaq~I~kffk~FP~l~~~-----Ai~a~~DLcEDed~~iR~~aik~lp~~ck~~~~~v~k---- 96 (556)
T PF05918_consen 27 EILDGVK-GSPKEKRLAAQFIPKFFKHFPDLQEE-----AINAQLDLCEDEDVQIRKQAIKGLPQLCKDNPEHVSK---- 96 (556)
T ss_dssp HHHHGGG-S-HHHHHHHHHHHHHHHCC-GGGHHH-----HHHHHHHHHT-SSHHHHHHHHHHGGGG--T--T-HHH----
T ss_pred HHHHHcc-CCHHHHHHHHHHHHHHHhhChhhHHH-----HHHHHHHHHhcccHHHHHHHHHhHHHHHHhHHHHHhH----
Confidence 3444444 57889999999999998878877655 4567999999999999999999999999887655443
Q ss_pred CChHHHHHhhccCChHHHHHHHHHHHHHhcCChhhHHHHHhcCChHHHHHHhc---CCCHHHHHHHHHHHHHhhc-CC-C
Q 005044 291 GALQPVIGLLSSCCSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQ---SPDVQLREMSAFALGRLAQ-DM-H 365 (717)
Q Consensus 291 g~l~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~l~~~~~l~~L~~~l~---~~~~~v~~~a~~~L~~l~~-~~-~ 365 (717)
+.+.|+++|.++++.....+-.+|..+...++.. .+..+...+. .++..+|+.++..|..=.. -. .
T Consensus 97 -vaDvL~QlL~tdd~~E~~~v~~sL~~ll~~d~k~--------tL~~lf~~i~~~~~~de~~Re~~lkFl~~kl~~l~~~ 167 (556)
T PF05918_consen 97 -VADVLVQLLQTDDPVELDAVKNSLMSLLKQDPKG--------TLTGLFSQIESSKSGDEQVRERALKFLREKLKPLKPE 167 (556)
T ss_dssp -HHHHHHHHTT---HHHHHHHHHHHHHHHHH-HHH--------HHHHHHHHHH---HS-HHHHHHHHHHHHHHGGGS-TT
T ss_pred -HHHHHHHHHhcccHHHHHHHHHHHHHHHhcCcHH--------HHHHHHHHHHhcccCchHHHHHHHHHHHHHHhhCcHH
Confidence 4678999999988766666666776665444332 2334444443 4678899998877754222 11 1
Q ss_pred Cch--hhHhcCChHHHHHhhcCCChhHHHHHHHHHHhccC
Q 005044 366 NQA--GIAHNGGLVPLLKLLDSKNGSLQHNAAFALYGLAD 403 (717)
Q Consensus 366 ~~~--~l~~~~~l~~L~~ll~~~~~~v~~~a~~~L~~l~~ 403 (717)
.-. .=.+.-++..+.++|.+-..+=-.....+|..+-.
T Consensus 168 ~~~p~~E~e~~i~~~ikkvL~DVTaeEF~l~m~lL~~lk~ 207 (556)
T PF05918_consen 168 LLTPQKEMEEFIVDEIKKVLQDVTAEEFELFMSLLKSLKI 207 (556)
T ss_dssp TS---HHHHHHHHHHHHHHCTT--HHHHHHHHHHHHTSGG
T ss_pred HhhchHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHhCcc
Confidence 111 11222334445556654333333344455666543
No 221
>COG5218 YCG1 Chromosome condensation complex Condensin, subunit G [Chromatin structure and dynamics / Cell division and chromosome partitioning]
Probab=94.66 E-value=4.2 Score=42.89 Aligned_cols=128 Identities=20% Similarity=0.218 Sum_probs=84.2
Q ss_pred HHHHHhhccChhhHHHHHhcCCHHHHHHHHcCCCHHHHHHHHHHHHHhhcCChHHHHHHHHcCChHHHHHhhccCChHHH
Q 005044 229 GALRTLAFKNDENKNQIVECNALPTLILMLRSEDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLSSCCSESQ 308 (717)
Q Consensus 229 ~~L~~L~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~l~~L~~ll~~~~~~~~ 308 (717)
..+.....++|+. ..+++ |.+..+++.+.+.+..||..++.+|..+.....+. ...+-.|++..|.+-+-+..+.+|
T Consensus 73 ~f~~Y~~~~dpeg-~~~V~-~~~~h~lRg~eskdk~VR~r~lqila~~~d~v~eI-De~l~N~L~ekl~~R~~DRE~~VR 149 (885)
T COG5218 73 RFFEYDMPDDPEG-EELVA-GTFYHLLRGTESKDKKVRKRSLQILALLSDVVREI-DEVLANGLLEKLSERLFDREKAVR 149 (885)
T ss_pred HHHHhcCCCChhh-hHHHH-HHHHHHHhcccCcchhHHHHHHHHHHHHHHhcchH-HHHHHHHHHHHHHHHHhcchHHHH
Confidence 3333344445554 33332 46777888888899999999999999886443332 355556788888888888889999
Q ss_pred HHHHHHHHHHhcCChhhHHHHHhcCChHHHHHHhcC-CCHHHHHHHHHHHHHhhcCCCCc
Q 005044 309 REAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQS-PDVQLREMSAFALGRLAQDMHNQ 367 (717)
Q Consensus 309 ~~a~~~L~~l~~~~~~~~~~l~~~~~l~~L~~~l~~-~~~~v~~~a~~~L~~l~~~~~~~ 367 (717)
.+|..+|+.+-. .+.+.. ......|..+++. ++.+||.. +|.|+..++...
T Consensus 150 ~eAv~~L~~~Qe-~~~nee----n~~~n~l~~~vqnDPS~EVRr~---allni~vdnsT~ 201 (885)
T COG5218 150 REAVKVLCYYQE-MELNEE----NRIVNLLKDIVQNDPSDEVRRL---ALLNISVDNSTY 201 (885)
T ss_pred HHHHHHHHHHHh-ccCChH----HHHHHHHHHHHhcCcHHHHHHH---HHHHeeeCCCcc
Confidence 999999998852 222211 1123356666654 67789887 566776554433
No 222
>KOG1243 consensus Protein kinase [General function prediction only]
Probab=94.64 E-value=0.19 Score=53.79 Aligned_cols=186 Identities=15% Similarity=0.208 Sum_probs=115.6
Q ss_pred hcCCHHHHHHHHcCCCHHHHHHHHHHHHHhhcCChHHHHHHHHcCChHHHHHhhccCChHHHHHHHHHHHHHhcCChhhH
Q 005044 247 ECNALPTLILMLRSEDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLSSCCSESQREAALLLGQFAATDSDCK 326 (717)
Q Consensus 247 ~~g~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~l~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~ 326 (717)
..+++|.|+++++..|..+|...+.-+-.... .....+++..+++.+...+.+.++.+|...+..+..++.. .-
T Consensus 328 q~~i~p~l~kLF~~~Dr~iR~~LL~~i~~~i~---~Lt~~~~~d~I~phv~~G~~DTn~~Lre~Tlksm~~La~k---L~ 401 (690)
T KOG1243|consen 328 QVRIIPVLLKLFKSPDRQIRLLLLQYIEKYID---HLTKQILNDQIFPHVALGFLDTNATLREQTLKSMAVLAPK---LS 401 (690)
T ss_pred ccchhhhHHHHhcCcchHHHHHHHHhHHHHhh---hcCHHhhcchhHHHHHhhcccCCHHHHHHHHHHHHHHHhh---hc
Confidence 34578888888888888887777666665542 2335566777888888888888888888888877777632 21
Q ss_pred HHHHhcCChHHHHHHhcCCCHHHHHHHHHHHHHhhcCCCCchhhHhcCCh-HHHHHhhcCCChhHHHHHHHHHHhccCCC
Q 005044 327 VHIVQRGAVRPLIEMLQSPDVQLREMSAFALGRLAQDMHNQAGIAHNGGL-VPLLKLLDSKNGSLQHNAAFALYGLADNE 405 (717)
Q Consensus 327 ~~l~~~~~l~~L~~~l~~~~~~v~~~a~~~L~~l~~~~~~~~~l~~~~~l-~~L~~ll~~~~~~v~~~a~~~L~~l~~~~ 405 (717)
...++...+..+..+-.+.+..+|.+..-+|+.++.+.... +..+.+ -.+.+.+.+.-..-|..+.++++.....-
T Consensus 402 ~~~Ln~Ellr~~ar~q~d~~~~irtntticlgki~~~l~~~---~R~~vL~~aftralkdpf~paR~a~v~~l~at~~~~ 478 (690)
T KOG1243|consen 402 KRNLNGELLRYLARLQPDEHGGIRTNTTICLGKIAPHLAAS---VRKRVLASAFTRALKDPFVPARKAGVLALAATQEYF 478 (690)
T ss_pred hhhhcHHHHHHHHhhCccccCcccccceeeecccccccchh---hhccccchhhhhhhcCCCCCchhhhhHHHhhccccc
Confidence 22333334444555444456667777777777666543221 123332 23555566666666677777666554322
Q ss_pred cchHHHHHhcCccccccchhHHhhhHHHHHHHHHHHHHHhhhchHHHHHHHHhhcchhHHHHHHHHHHhcc
Q 005044 406 DNVADFIRVGGVQKLQDGEFIVQATKDCVAKTLKRLEEKIHGRVLNHLLYLMRVAEKGVQRRVALALAHLC 476 (717)
Q Consensus 406 ~~~~~l~~~~~i~~L~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~L~~ll~~~~~~v~~~a~~aL~~l~ 476 (717)
+. ..+...+++.+..+..+++..+|..+-.++...-
T Consensus 479 ~~-----------------------------------~~va~kIlp~l~pl~vd~e~~vr~~a~~~i~~fl 514 (690)
T KOG1243|consen 479 DQ-----------------------------------SEVANKILPSLVPLTVDPEKTVRDTAEKAIRQFL 514 (690)
T ss_pred ch-----------------------------------hhhhhhccccccccccCcccchhhHHHHHHHHHH
Confidence 21 1123347777888888888888888877776653
No 223
>PF12719 Cnd3: Nuclear condensing complex subunits, C-term domain
Probab=94.60 E-value=0.68 Score=46.37 Aligned_cols=169 Identities=17% Similarity=0.144 Sum_probs=110.8
Q ss_pred CcHHHH-HhhcCCCHHHHHHHHHHHHHhhccChhhHHHHHhcCCHHHHHHHHcCCCHHHHHHHHHHHHHhhcCChH-HHH
Q 005044 208 GIPPLV-ELLEFTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSEDSAIHYEAVGVIGNLVHSSPN-IKK 285 (717)
Q Consensus 208 ~i~~L~-~ll~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~-~~~ 285 (717)
.+..|+ ..++++++.+|..++.+|+-.+.-+.+.... .++.+...++.+++.++..|+.++..+...... ...
T Consensus 27 ll~~lI~P~v~~~~~~vR~~al~cLGl~~Lld~~~a~~-----~l~l~~~~~~~~~~~v~~~al~~l~Dll~~~g~~~~~ 101 (298)
T PF12719_consen 27 LLDSLILPAVQSSDPAVRELALKCLGLCCLLDKELAKE-----HLPLFLQALQKDDEEVKITALKALFDLLLTHGIDIFD 101 (298)
T ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhChHHHHH-----HHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCchhcc
Confidence 344443 5678899999999999999998755433222 356777788778999999999999998643221 111
Q ss_pred H-------HHHcCChHHHHHhhccCChHHHHHHHHHHHHHhcCChhhHHHHHhcCChHHHH-HHhc---CCCHHHHHHHH
Q 005044 286 E-------VLAAGALQPVIGLLSSCCSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLI-EMLQ---SPDVQLREMSA 354 (717)
Q Consensus 286 ~-------~~~~g~l~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~l~~~~~l~~L~-~~l~---~~~~~v~~~a~ 354 (717)
. .....+++.+.+.+.+.+++++..++..++.|.-.+.-.. ...++..|+ .+.. .++..+|..-.
T Consensus 102 ~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~a~EGl~KLlL~~~i~~----~~~vL~~Lll~yF~p~t~~~~~LrQ~L~ 177 (298)
T PF12719_consen 102 SESDNDESVDSKSLLKILTKFLDSENPELQAIAVEGLCKLLLSGRISD----PPKVLSRLLLLYFNPSTEDNQRLRQCLS 177 (298)
T ss_pred chhccCccchHhHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhcCCCCc----HHHHHHHHHHHHcCcccCCcHHHHHHHH
Confidence 1 1123567888889998999999999999999753321111 012233332 2332 24567887777
Q ss_pred HHHHHhhcCCCCchhhHhcCChHHHHHhhcC
Q 005044 355 FALGRLAQDMHNQAGIAHNGGLVPLLKLLDS 385 (717)
Q Consensus 355 ~~L~~l~~~~~~~~~l~~~~~l~~L~~ll~~ 385 (717)
..+-..+..+......+...+++.+..+...
T Consensus 178 ~Ffp~y~~s~~~~Q~~l~~~f~~~l~~~~~~ 208 (298)
T PF12719_consen 178 VFFPVYASSSPENQERLAEAFLPTLRTLSNA 208 (298)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHHHHhC
Confidence 7788888766555566666667666666543
No 224
>KOG2956 consensus CLIP-associating protein [General function prediction only]
Probab=94.57 E-value=1.3 Score=45.28 Aligned_cols=167 Identities=19% Similarity=0.139 Sum_probs=97.4
Q ss_pred HHHHHHHHHHHhhc-ChhhHHHHHhCCChHHHHHhhcCCCCCccccCCCccchHHHhHHHHHHHHhc-CChhhHHHHHh-
Q 005044 79 AAKRATHVLAELAK-NEEVVNWIVEGGAVPALVKHLQAPPTSEADRNLKPFEHEVEKGSAFALGLLA-VKPEHQQLIVD- 155 (717)
Q Consensus 79 ~~~~a~~~L~~l~~-~~~~~~~~~~~g~i~~L~~lL~~~~~~~~~~~~~~~~~~v~~~a~~~L~~l~-~~~~~~~~~~~- 155 (717)
.+..|+.-|..+.. +......=.-..++..+++.|.+... +..+..|++.|..++ ..+.- +.+
T Consensus 303 ~~k~alsel~~m~~e~sfsvWeq~f~~iL~~l~EvL~d~~~-----------~~~k~laLrvL~~ml~~Q~~~---l~Ds 368 (516)
T KOG2956|consen 303 ERKEALSELPKMLCEGSFSVWEQHFAEILLLLLEVLSDSED-----------EIIKKLALRVLREMLTNQPAR---LFDS 368 (516)
T ss_pred HHHHHHHHHHHHHHccchhHHHHHHHHHHHHHHHHHccchh-----------hHHHHHHHHHHHHHHHhchHh---hhch
Confidence 36777776666544 42222211112346777888877322 288999999999999 43321 111
Q ss_pred -CCChHHHHHHHhccccCCCccchhHHHHHHHHH-HHHHhhcCchhhhHHHhcCCcHHHHHhhcCCCHHHHHHHHHHHHH
Q 005044 156 -NGALSHLVNLLKRHMDSNCSRAVNSVIRRAADA-ITNLAHENSSIKTRVRMEGGIPPLVELLEFTDTKVQRAAAGALRT 233 (717)
Q Consensus 156 -~~~i~~L~~lL~~~~~~~~~~~~~~~~~~a~~~-L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~ 233 (717)
.-++..+++.-++.++ ++...|... +.-++...+..+ |..+..++...+...-..++..+..
T Consensus 369 tE~ai~K~Leaa~ds~~--------~v~~~Aeed~~~~las~~P~~~--------I~~i~~~Ilt~D~~~~~~~iKm~Tk 432 (516)
T KOG2956|consen 369 TEIAICKVLEAAKDSQD--------EVMRVAEEDCLTTLASHLPLQC--------IVNISPLILTADEPRAVAVIKMLTK 432 (516)
T ss_pred HHHHHHHHHHHHhCCch--------hHHHHHHHHHHHHHHhhCchhH--------HHHHhhHHhcCcchHHHHHHHHHHH
Confidence 1124444444444444 555555544 444555444322 2233444444566666667777777
Q ss_pred hhccChhhHHHHH--hcCCHHHHHHHHcCCCHHHHHHHHHHHHHhh
Q 005044 234 LAFKNDENKNQIV--ECNALPTLILMLRSEDSAIHYEAVGVIGNLV 277 (717)
Q Consensus 234 L~~~~~~~~~~~~--~~g~i~~L~~ll~~~~~~v~~~a~~~L~~l~ 277 (717)
++..-. .+.+. -..+.|.+++.-.+.+..||..|+.+|..+.
T Consensus 433 l~e~l~--~EeL~~ll~diaP~~iqay~S~SS~VRKtaVfCLVamv 476 (516)
T KOG2956|consen 433 LFERLS--AEELLNLLPDIAPCVIQAYDSTSSTVRKTAVFCLVAMV 476 (516)
T ss_pred HHhhcC--HHHHHHhhhhhhhHHHHHhcCchHHhhhhHHHhHHHHH
Confidence 775221 22222 2458899999999999999999999998874
No 225
>KOG4653 consensus Uncharacterized conserved protein [Function unknown]
Probab=94.53 E-value=0.8 Score=50.28 Aligned_cols=177 Identities=14% Similarity=0.124 Sum_probs=114.3
Q ss_pred HHHHHHHHHHHHHhhcChhhHHHHHhCCChHHHHHhhcCCCCCccccCCCccchHHHhHHHHHHHHhc-CChhhHHHHHh
Q 005044 77 RAAAKRATHVLAELAKNEEVVNWIVEGGAVPALVKHLQAPPTSEADRNLKPFEHEVEKGSAFALGLLA-VKPEHQQLIVD 155 (717)
Q Consensus 77 ~~~~~~a~~~L~~l~~~~~~~~~~~~~g~i~~L~~lL~~~~~~~~~~~~~~~~~~v~~~a~~~L~~l~-~~~~~~~~~~~ 155 (717)
..++..++..|+.+....+....+...+++...+..|++.++ -|-..|.+.+..|| .-|+
T Consensus 741 vpik~~gL~~l~~l~e~r~~~~~~~~ekvl~i~ld~Lkdeds------------yvyLnaI~gv~~Lcevy~e------- 801 (982)
T KOG4653|consen 741 VPIKGYGLQMLRHLIEKRKKATLIQGEKVLAIALDTLKDEDS------------YVYLNAIRGVVSLCEVYPE------- 801 (982)
T ss_pred ccchHHHHHHHHHHHHhcchhhhhhHHHHHHHHHHHhcccCc------------eeeHHHHHHHHHHHHhcch-------
Confidence 447899999999999866666777788999999999999888 78889999888888 3222
Q ss_pred CCChHHHHH-HHhccccCCCccchhHHHHHHHHHHHHHhhcCchhhhHHHhcCCcHHHHHhhcCCCHHHHHHHHHHHHHh
Q 005044 156 NGALSHLVN-LLKRHMDSNCSRAVNSVIRRAADAITNLAHENSSIKTRVRMEGGIPPLVELLEFTDTKVQRAAAGALRTL 234 (717)
Q Consensus 156 ~~~i~~L~~-lL~~~~~~~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~L 234 (717)
..++.+.+ +.+..... .. +.+.....++.++...--+.-..... -.+...+...++++...|..++..++++
T Consensus 802 -~il~dL~e~Y~s~k~k~-~~----d~~lkVGEai~k~~qa~Gel~~~y~~-~Li~tfl~gvrepd~~~RaSS~a~lg~L 874 (982)
T KOG4653|consen 802 -DILPDLSEEYLSEKKKL-QT----DYRLKVGEAILKVAQALGELVFKYKA-VLINTFLSGVREPDHEFRASSLANLGQL 874 (982)
T ss_pred -hhHHHHHHHHHhcccCC-Cc----cceehHHHHHHHHHHHhccHHHHHHH-HHHHHHHHhcCCchHHHHHhHHHHHHHH
Confidence 45777777 33333221 01 22222334555544322221111111 2456777778888888999999999999
Q ss_pred hccChhh-HHHHHhcCCHHHHHHHHc-CCCHHHHHHHHHHHHHhhcCCh
Q 005044 235 AFKNDEN-KNQIVECNALPTLILMLR-SEDSAIHYEAVGVIGNLVHSSP 281 (717)
Q Consensus 235 ~~~~~~~-~~~~~~~g~i~~L~~ll~-~~~~~v~~~a~~~L~~l~~~~~ 281 (717)
|.-.... ...+.+ ++..++.+.+ +++.-+|+.|+..+..+..+..
T Consensus 875 cq~~a~~vsd~~~e--v~~~Il~l~~~d~s~~vRRaAv~li~~lL~~tg 921 (982)
T KOG4653|consen 875 CQLLAFQVSDFFHE--VLQLILSLETTDGSVLVRRAAVHLLAELLNGTG 921 (982)
T ss_pred HHHHhhhhhHHHHH--HHHHHHHHHccCCchhhHHHHHHHHHHHHhccc
Confidence 8632211 112222 3444555554 4577899999999999876543
No 226
>PF14668 RICTOR_V: Rapamycin-insensitive companion of mTOR, domain 5
Probab=94.45 E-value=0.093 Score=39.03 Aligned_cols=67 Identities=12% Similarity=0.146 Sum_probs=56.0
Q ss_pred HHHHHHHHHHhhcCCCCchhhHhcCChHHHHHhhc-CCChhHHHHHHHHHHhccCCCcchHHHHHhcC
Q 005044 350 REMSAFALGRLAQDMHNQAGIAHNGGLVPLLKLLD-SKNGSLQHNAAFALYGLADNEDNVADFIRVGG 416 (717)
Q Consensus 350 ~~~a~~~L~~l~~~~~~~~~l~~~~~l~~L~~ll~-~~~~~v~~~a~~~L~~l~~~~~~~~~l~~~~~ 416 (717)
.+.++|++++++..+..-..+.+.+.++.++++.. ++...+|-.+..+|.-++...+..+.+.+.|.
T Consensus 4 lKaaLWaighIgss~~G~~lL~~~~iv~~iv~~a~~s~v~siRGT~fy~Lglis~T~~G~~~L~~~gW 71 (73)
T PF14668_consen 4 LKAALWAIGHIGSSPLGIQLLDESDIVEDIVKIAENSPVLSIRGTCFYVLGLISSTEEGAEILDELGW 71 (73)
T ss_pred HHHHHHHHHhHhcChHHHHHHhhcCHHHHHHHHHHhCCccchHHHHHHHHHHHhCCHHHHHHHHHcCC
Confidence 46799999999987766666667789999999986 56788999999999999999888888777663
No 227
>COG5116 RPN2 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=94.42 E-value=3.3 Score=43.45 Aligned_cols=154 Identities=16% Similarity=0.136 Sum_probs=100.9
Q ss_pred HHHHhhcCCCHHHHHHHHHHHHHhhccChhhHHHHHhcCCHHHHHHH-HcCCCHHHHHHHHHHHHHhhcCChHHHHHHHH
Q 005044 211 PLVELLEFTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILM-LRSEDSAIHYEAVGVIGNLVHSSPNIKKEVLA 289 (717)
Q Consensus 211 ~L~~ll~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~g~i~~L~~l-l~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~ 289 (717)
.+-+++.+.++-+|......+..--. .. .+.|++..++.. .++.+++|++.|+.+|+-+|..+..
T Consensus 520 ~I~ell~d~ds~lRy~G~fs~alAy~-GT------gn~~vv~~lLh~avsD~nDDVrRAAViAlGfvc~~D~~------- 585 (926)
T COG5116 520 YINELLYDKDSILRYNGVFSLALAYV-GT------GNLGVVSTLLHYAVSDGNDDVRRAAVIALGFVCCDDRD------- 585 (926)
T ss_pred HHHHHhcCchHHhhhccHHHHHHHHh-cC------CcchhHhhhheeecccCchHHHHHHHHheeeeEecCcc-------
Confidence 44556667777777665544432111 11 124677777776 6788999999999999999876543
Q ss_pred cCChHHHHHhhcc-CChHHHHHHHHHHHHHhcCChhhHHHHHhcCChHHHHHHhcCCCHHHHHHHHHHHHHhhcCCCCch
Q 005044 290 AGALQPVIGLLSS-CCSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQSPDVQLREMSAFALGRLAQDMHNQA 368 (717)
Q Consensus 290 ~g~l~~L~~ll~~-~~~~~~~~a~~~L~~l~~~~~~~~~~l~~~~~l~~L~~~l~~~~~~v~~~a~~~L~~l~~~~~~~~ 368 (717)
.++..+++|.. .++.+|...+.+|+-.|++.... ..+..|-.++.+.+.-||..|+-+++.+......+-
T Consensus 586 --~lv~tvelLs~shN~hVR~g~AvaLGiacag~G~~-------~a~diL~~L~~D~~dfVRQ~AmIa~~mIl~Q~n~~L 656 (926)
T COG5116 586 --LLVGTVELLSESHNFHVRAGVAVALGIACAGTGDK-------VATDILEALMYDTNDFVRQSAMIAVGMILMQCNPEL 656 (926)
T ss_pred --hhhHHHHHhhhccchhhhhhhHHHhhhhhcCCccH-------HHHHHHHHHhhCcHHHHHHHHHHHHHHHHhhcCccc
Confidence 36667777765 46889998899999887654332 134556667788889999999999988775332221
Q ss_pred hhHhcCChHHHHHhhcCCC
Q 005044 369 GIAHNGGLVPLLKLLDSKN 387 (717)
Q Consensus 369 ~l~~~~~l~~L~~ll~~~~ 387 (717)
.---.++...+.+++.+++
T Consensus 657 np~v~~I~k~f~~vI~~Kh 675 (926)
T COG5116 657 NPNVKRIIKKFNRVIVDKH 675 (926)
T ss_pred ChhHHHHHHHHHHHHhhhh
Confidence 1112244556666665443
No 228
>PF11701 UNC45-central: Myosin-binding striated muscle assembly central; InterPro: IPR024660 The UNC-45 or small muscle protein 1 of Caenorhabditis elegans is expressed in two forms from different genomic positions in mammals: as a general tissue protein (UNC-45a) and as a specific form (UNC-45b) expressed only in striated and skeletal muscle. Myofibril formation requires both UNC-45 forms, consistent with the fact that the cytoskeleton is necessary for the development and maintenance of organised myofibrils []. Rng3 (Ring assembly protein 3), the homologue in Schizosaccharomyces pombe, is crucial for cell shape, normal actin cytoskeleton, and contractile ring assembly, and is essential for assembly of the myosin II-containing progenitors of the contractile ring. Widespread defects in the cytoskeleton are found in null mutants of all three fungal proteins []. Mammalian Unc45 is found to act as a specific chaperone during the folding of myosin and the assembly of striated muscle by forming a stable complex with the general chaperone Hsp90 []. All members carry up to three amino-terminal tetratricopeptide repeat (TPR) and a UCS domain at the C terminus that contains a number of Arm repeats. ; PDB: 3OPB_A 3NOW_A.
Probab=94.39 E-value=0.24 Score=43.99 Aligned_cols=146 Identities=19% Similarity=0.183 Sum_probs=95.9
Q ss_pred HHHHHHHHc--CCCHHHHHHHHHHHHHhhcCChHHHHHHHHcCChHHHHHhhccCChHHHHHHHHHHHHHhcCChhhHHH
Q 005044 251 LPTLILMLR--SEDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLSSCCSESQREAALLLGQFAATDSDCKVH 328 (717)
Q Consensus 251 i~~L~~ll~--~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~l~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~ 328 (717)
++.++..|. ...+++|..+.-++..+. +..++. ...-+-+.+..++...+.+....+..++..+--..++....
T Consensus 5 l~~lL~~L~~~~~~~~~r~~a~v~l~k~l---~~~~~~-~~~~~~~~i~~~~~~~~~d~~i~~~~~l~~lfp~~~dv~~~ 80 (157)
T PF11701_consen 5 LDTLLTSLDMLRQPEEVRSHALVILSKLL---DAAREE-FKEKISDFIESLLDEGEMDSLIIAFSALTALFPGPPDVGSE 80 (157)
T ss_dssp CCHHHHHHHCTTTSCCHHHHHHHHHHHHH---HHHHHH-HHHHHHHHHHHHHCCHHCCHHHHHHHHHHHHCTTTHHHHHH
T ss_pred HHHHHHHhcccCCCHhHHHHHHHHHHHHH---HHhHHH-HHHHHHHHHHHHHccccchhHHHHHHHHHHHhCCCHHHHHH
Confidence 444555554 356688888888888873 222222 22223444455555544556677788888886666776655
Q ss_pred HH-hcCChHHHHHHhc--CCCHHHHHHHHHHHHHhhcCCCCchhhHhcCChHHHHHhhc-CCChh-HHHHHHHHHHhc
Q 005044 329 IV-QRGAVRPLIEMLQ--SPDVQLREMSAFALGRLAQDMHNQAGIAHNGGLVPLLKLLD-SKNGS-LQHNAAFALYGL 401 (717)
Q Consensus 329 l~-~~~~l~~L~~~l~--~~~~~v~~~a~~~L~~l~~~~~~~~~l~~~~~l~~L~~ll~-~~~~~-v~~~a~~~L~~l 401 (717)
+. ..|+++.++.++. ..+..++..++.+|..-|.+. .+...+...+++.|.+..+ +++.. ++..|+-+|..+
T Consensus 81 l~~~eg~~~~l~~~~~~~~~~~~~~~~~lell~aAc~d~-~~r~~I~~~~~~~L~~~~~~~~~~~~ir~~A~v~L~Kl 157 (157)
T PF11701_consen 81 LFLSEGFLESLLPLASRKSKDRKVQKAALELLSAACIDK-SCRTFISKNYVSWLKELYKNSKDDSEIRVLAAVGLCKL 157 (157)
T ss_dssp HCCTTTHHHHHHHHHH-CTS-HHHHHHHHHHHHHHTTSH-HHHHCCHHHCHHHHHHHTTTCC-HH-CHHHHHHHHHHC
T ss_pred HHhhhhHHHHHHHHHhcccCCHHHHHHHHHHHHHHHccH-HHHHHHHHHHHHHHHHHHccccchHHHHHHHHHHHhcC
Confidence 54 6889999999998 678889889888887766554 4445555567888999885 55555 788888777654
No 229
>PF11701 UNC45-central: Myosin-binding striated muscle assembly central; InterPro: IPR024660 The UNC-45 or small muscle protein 1 of Caenorhabditis elegans is expressed in two forms from different genomic positions in mammals: as a general tissue protein (UNC-45a) and as a specific form (UNC-45b) expressed only in striated and skeletal muscle. Myofibril formation requires both UNC-45 forms, consistent with the fact that the cytoskeleton is necessary for the development and maintenance of organised myofibrils []. Rng3 (Ring assembly protein 3), the homologue in Schizosaccharomyces pombe, is crucial for cell shape, normal actin cytoskeleton, and contractile ring assembly, and is essential for assembly of the myosin II-containing progenitors of the contractile ring. Widespread defects in the cytoskeleton are found in null mutants of all three fungal proteins []. Mammalian Unc45 is found to act as a specific chaperone during the folding of myosin and the assembly of striated muscle by forming a stable complex with the general chaperone Hsp90 []. All members carry up to three amino-terminal tetratricopeptide repeat (TPR) and a UCS domain at the C terminus that contains a number of Arm repeats. ; PDB: 3OPB_A 3NOW_A.
Probab=94.32 E-value=0.34 Score=42.99 Aligned_cols=146 Identities=21% Similarity=0.283 Sum_probs=95.8
Q ss_pred CcHHHHHhhc--CCCHHHHHHHHHHHHHhhccChhhHHHHHhcCCHHHHHHHHcCCCHHHHHHHHHHHHHhhcCChHHHH
Q 005044 208 GIPPLVELLE--FTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSEDSAIHYEAVGVIGNLVHSSPNIKK 285 (717)
Q Consensus 208 ~i~~L~~ll~--~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~ 285 (717)
.+..++..+. ...+++|..+.-++..+- +..+..+.+. +-+.+-.++...+.+-...++.++..+....++...
T Consensus 4 ~l~~lL~~L~~~~~~~~~r~~a~v~l~k~l---~~~~~~~~~~-~~~~i~~~~~~~~~d~~i~~~~~l~~lfp~~~dv~~ 79 (157)
T PF11701_consen 4 ELDTLLTSLDMLRQPEEVRSHALVILSKLL---DAAREEFKEK-ISDFIESLLDEGEMDSLIIAFSALTALFPGPPDVGS 79 (157)
T ss_dssp CCCHHHHHHHCTTTSCCHHHHHHHHHHHHH---HHHHHHHHHH-HHHHHHHHHCCHHCCHHHHHHHHHHHHCTTTHHHHH
T ss_pred HHHHHHHHhcccCCCHhHHHHHHHHHHHHH---HHhHHHHHHH-HHHHHHHHHccccchhHHHHHHHHHHHhCCCHHHHH
Confidence 3445555443 356778888888888874 2333333221 223344455554445678888999998877777766
Q ss_pred HHH-HcCChHHHHHhhc--cCChHHHHHHHHHHHHHhcCChhhHHHHHhcCChHHHHHHhcC-CCHH-HHHHHHHHHHH
Q 005044 286 EVL-AAGALQPVIGLLS--SCCSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQS-PDVQ-LREMSAFALGR 359 (717)
Q Consensus 286 ~~~-~~g~l~~L~~ll~--~~~~~~~~~a~~~L~~l~~~~~~~~~~l~~~~~l~~L~~~l~~-~~~~-v~~~a~~~L~~ 359 (717)
.+. ..|.++.++.+.. ..+..+...++.+|..-| .+..++. .+...+++.|-+..+. ++.. ++..|+-.|..
T Consensus 80 ~l~~~eg~~~~l~~~~~~~~~~~~~~~~~lell~aAc-~d~~~r~-~I~~~~~~~L~~~~~~~~~~~~ir~~A~v~L~K 156 (157)
T PF11701_consen 80 ELFLSEGFLESLLPLASRKSKDRKVQKAALELLSAAC-IDKSCRT-FISKNYVSWLKELYKNSKDDSEIRVLAAVGLCK 156 (157)
T ss_dssp HHCCTTTHHHHHHHHHH-CTS-HHHHHHHHHHHHHHT-TSHHHHH-CCHHHCHHHHHHHTTTCC-HH-CHHHHHHHHHH
T ss_pred HHHhhhhHHHHHHHHHhcccCCHHHHHHHHHHHHHHH-ccHHHHH-HHHHHHHHHHHHHHccccchHHHHHHHHHHHhc
Confidence 655 5788899999998 667778888888887765 4455544 4556688999999954 5555 77777777654
No 230
>KOG1788 consensus Uncharacterized conserved protein [Function unknown]
Probab=94.24 E-value=12 Score=42.41 Aligned_cols=379 Identities=14% Similarity=0.106 Sum_probs=185.8
Q ss_pred HHHHHHHHHHHhhc-ChhhHHHHHhCCChHHHHHhhcCCCCCccccCCCccchHHHhHHHHHHHHhc---CChhhHHHHH
Q 005044 79 AAKRATHVLAELAK-NEEVVNWIVEGGAVPALVKHLQAPPTSEADRNLKPFEHEVEKGSAFALGLLA---VKPEHQQLIV 154 (717)
Q Consensus 79 ~~~~a~~~L~~l~~-~~~~~~~~~~~g~i~~L~~lL~~~~~~~~~~~~~~~~~~v~~~a~~~L~~l~---~~~~~~~~~~ 154 (717)
.+.+.+..+..+.. ++++-...-+.--+|.++.-+..... .+|...+++|-.-. ..-..++
T Consensus 483 lqaeVlnrmfkIftshpeNYricqelytvpllvlnmegfPs------------slqvkiLkilEyAVtvvncvPeqE--- 547 (2799)
T KOG1788|consen 483 LQAEVLNRMFKIFTSHPENYRICQELYTVPLLVLNMEGFPS------------SLQVKILKILEYAVTVVNCVPEQE--- 547 (2799)
T ss_pred hhhHHHHHHHHHhccChHHhhHHhhccccchhhhhhcCCCh------------HHHHHHHHHHHHHHhhhccCcHHH---
Confidence 46777788887766 77776666667778888887776655 67777776664432 1111111
Q ss_pred hCCChHHHHHHHhccccCCCccchhHHHHHHHHHHHHHhhcCchhhhHHHhcCCcHHHHHhhc-----------------
Q 005044 155 DNGALSHLVNLLKRHMDSNCSRAVNSVIRRAADAITNLAHENSSIKTRVRMEGGIPPLVELLE----------------- 217 (717)
Q Consensus 155 ~~~~i~~L~~lL~~~~~~~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~----------------- 217 (717)
+-.|+-+|+..-.. .+....+.....|..-+...++.+.+-|.+..|-..++
T Consensus 548 ----LlSLCvLLqqpIss-------alkhtIlsffvKLIsfDqqyKkvlREVGvLevLqddlkqhkll~gpdqysgvseh 616 (2799)
T KOG1788|consen 548 ----LLSLCVLLQQPISS-------ALKHTILSFFVKLISFDQQYKKVLREVGVLEVLQDDLKQHKLLRGPDQYSGVSEH 616 (2799)
T ss_pred ----HHHHHHHhcchhhH-------HHHHHHHHHHHHHhhHHHHHHHHHHHhhHHHHHHHHHHHhhhccCcchhhhHHHH
Confidence 12233344432211 22222233333333333444444455454444433332
Q ss_pred ----------------------------CC---CH--HHH---HHHHHHHHHhhccChhhHHHHHhcCCHHHHHHHHcCC
Q 005044 218 ----------------------------FT---DT--KVQ---RAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSE 261 (717)
Q Consensus 218 ----------------------------~~---~~--~v~---~~a~~~L~~L~~~~~~~~~~~~~~g~i~~L~~ll~~~ 261 (717)
+. .+ ++. .....+|..+...+.++.+.+.+..++..++.++-+
T Consensus 617 ydrnpss~sf~~~ld~~daiisspklmeSgsgklplfevlltitvgwDcLisllKnnteNqklFreanGvklilpflin- 695 (2799)
T KOG1788|consen 617 YDRNPSSPSFKQHLDSQDAIISSPKLMESGSGKLPLFEVLLTITVGWDCLISLLKNNTENQKLFREANGVKLILPFLIN- 695 (2799)
T ss_pred hhcCCCCchhhhccccccceeecchhhcccCCccchhhhhhhhhchHHHHHHHHhccchhhHHHHhhcCceEEEEeeec-
Confidence 10 00 010 122456667777778888888888888777777633
Q ss_pred CHHHHHHHHHHHHHhhcCChHHHHHHHHcCChHHHHHhhccC--------C----hHHHHHHHHHHHHHhcCChhhHHHH
Q 005044 262 DSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLSSC--------C----SESQREAALLLGQFAATDSDCKVHI 329 (717)
Q Consensus 262 ~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~l~~L~~ll~~~--------~----~~~~~~a~~~L~~l~~~~~~~~~~l 329 (717)
++-|...++++..+....+... ...-+-.++..|+++ + .+.......+++.+...+...+..+
T Consensus 696 -dehRSslLrivscLitvdpkqv----hhqelmalVdtLksgmvt~IsgeqyklhfsllcdlmGalwrivgvngsaqrvF 770 (2799)
T KOG1788|consen 696 -DEHRSSLLRIVSCLITVDPKQV----HHQELMALVDTLKSGMVTRISGEQYKLHFSLLCDLMGALWRIVGVNGSAQRVF 770 (2799)
T ss_pred -hHHHHHHHHHHHHHhccCcccc----cHHHHHHHHHHHHhcceeccchhHHHHHHHHHHHHHHHHHHHHccCchheeeh
Confidence 3445556666666654433310 011133455555542 1 1234455667777765556667778
Q ss_pred HhcCChHHHHHHhcC--------CCHH--HHHHHHHHHH---H--hhcCCCCchhhHhcCChHHHHHhhcCCC---hhHH
Q 005044 330 VQRGAVRPLIEMLQS--------PDVQ--LREMSAFALG---R--LAQDMHNQAGIAHNGGLVPLLKLLDSKN---GSLQ 391 (717)
Q Consensus 330 ~~~~~l~~L~~~l~~--------~~~~--v~~~a~~~L~---~--l~~~~~~~~~l~~~~~l~~L~~ll~~~~---~~v~ 391 (717)
.+.+++..|...|.. +..+ +-..-...|. . ++.++.|+..+...-.-+.+..+|.... .+.-
T Consensus 771 geatGFslLlttLhtfqgftelhdesDlcvyiklfkilFrlfTlavcenasNrmklhtvITsqtftsLLresgllcvnle 850 (2799)
T KOG1788|consen 771 GEATGFSLLLTTLHTFQGFTELHDESDLCVYIKLFKILFRLFTLAVCENASNRMKLHTVITSQTFTSLLRESGLLCVNLE 850 (2799)
T ss_pred hccccHHHHHHHHHHhccchhcCCchhhhhHHHHHHHHHHHHHHHHhhcchhhhheeeeeeHHHHHHHHHHhccceecch
Confidence 888888888777631 1111 1111112222 2 2345555554433333333444443221 0111
Q ss_pred HHHHHH-----HHhccC-----CCcchHHHHH-hcCccccccchhHHhhhHHHHHHHHHHHHHHhhhchHHHHHHHHhhc
Q 005044 392 HNAAFA-----LYGLAD-----NEDNVADFIR-VGGVQKLQDGEFIVQATKDCVAKTLKRLEEKIHGRVLNHLLYLMRVA 460 (717)
Q Consensus 392 ~~a~~~-----L~~l~~-----~~~~~~~l~~-~~~i~~L~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~L~~ll~~~ 460 (717)
+..... +..+.. ....+..+.+ .+.+...-.....+.+. -+..+..+++..|++.+-..
T Consensus 851 r~viqlllElalevlvppfLtSEsaAcaeVfelednifavntPsGqfnpd----------k~~iynagavRvlirslLln 920 (2799)
T KOG1788|consen 851 RHVIQLLLELALEVLVPPFLTSESAACAEVFELEDNIFAVNTPSGQFNPD----------KQKIYNAGAVRVLIRSLLLN 920 (2799)
T ss_pred HHHHHHHHHHHHHhhCCchhhhhHHHHHHHhhcccceeeeccCCCCcCch----------HhhhcccchhHHHHHHHHhh
Confidence 111111 111111 0011111111 01010000000000011 11234556778888888888
Q ss_pred chhHHHHHHHHHHhccCCCC-CceeeecCCCHHHHHHHhc
Q 005044 461 EKGVQRRVALALAHLCSPDD-QRTIFIDGGGLELLLGLLG 499 (717)
Q Consensus 461 ~~~v~~~a~~aL~~l~~~~~-~~~~~~~~~~l~~L~~ll~ 499 (717)
.|..+.+-++.+..+++..+ ++..+...|.+..|+.++.
T Consensus 921 ypK~qlefl~lleSlaRaspfnaelltS~gcvellleIiy 960 (2799)
T KOG1788|consen 921 YPKLQLEFLNLLESLARASPFNAELLTSAGCVELLLEIIY 960 (2799)
T ss_pred ChHHHHHHHHHHHHHhhcCCCchhhhhcccHHHHHHHHhh
Confidence 88999999999998887665 5555555577776666553
No 231
>PF04063 DUF383: Domain of unknown function (DUF383); InterPro: IPR007205 This is a protein of unknown function. It is found N-terminal to another domain of unknown function (IPR007206 from INTERPRO).
Probab=94.17 E-value=0.53 Score=43.08 Aligned_cols=127 Identities=17% Similarity=0.199 Sum_probs=83.4
Q ss_pred HHHhHHHHHHHHhcCChhhHHHHHh----------------CCChHHHHHHHhccccC-CCccchhHHHHHHHHHHHHHh
Q 005044 131 EVEKGSAFALGLLAVKPEHQQLIVD----------------NGALSHLVNLLKRHMDS-NCSRAVNSVIRRAADAITNLA 193 (717)
Q Consensus 131 ~v~~~a~~~L~~l~~~~~~~~~~~~----------------~~~i~~L~~lL~~~~~~-~~~~~~~~~~~~a~~~L~~l~ 193 (717)
.....++.+|+|++..++....+.+ ...+..|+..+...... ... ..-..+.+.++.|++
T Consensus 10 ~~adl~~MLLsNlT~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~l~~Ll~~F~~g~~~~~n~---~~~~~yla~vl~NlS 86 (192)
T PF04063_consen 10 PLADLACMLLSNLTRSDSGCEKLLQLKRESSSQAPKEVSLSGFYLDKLLDLFVKGADPSYNK---KDNYDYLASVLANLS 86 (192)
T ss_pred chHHHHHHHHHHhccchHHHHHHHhcccccccccccccchhHHHHHHHHHHHHcCCcccCCC---CcchhHHHHHHHHhc
Confidence 4666788899999855555443332 23566777766652111 111 156678999999999
Q ss_pred hcCchhhhHHHhc--CC--cHHHHHhhcCCCHHHHHHHHHHHHHhhccChhhHHHHHh--cCCHHHHHHHHcCC
Q 005044 194 HENSSIKTRVRME--GG--IPPLVELLEFTDTKVQRAAAGALRTLAFKNDENKNQIVE--CNALPTLILMLRSE 261 (717)
Q Consensus 194 ~~~~~~~~~~~~~--~~--i~~L~~ll~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~--~g~i~~L~~ll~~~ 261 (717)
. .+..|..+... +. +..|+.+..+.+..-|..++.+|.|+|.+.+.+...+.. .+++|.|+--|..+
T Consensus 87 ~-~~~gR~~~l~~~~~~~~l~kLl~ft~~~s~iRR~Gva~~IrNccFd~~~H~~LL~~~~~~iLp~LLlPLaGp 159 (192)
T PF04063_consen 87 Q-LPEGRQFFLDPQRYDGPLQKLLPFTEHKSVIRRGGVAGTIRNCCFDTDSHEWLLSDDEVDILPYLLLPLAGP 159 (192)
T ss_pred C-CHHHHHHHhCchhhhhHHHHHHHHhccCcHHHHHHHHHHHHHhhccHhHHHHhcCchhhhhHHHHHhhccCC
Confidence 8 77788877754 23 677888888888888889999999999854444333332 25566665555443
No 232
>KOG4464 consensus Signaling protein RIC-8/synembryn (regulates neurotransmitter secretion) [Signal transduction mechanisms]
Probab=94.10 E-value=7.2 Score=39.35 Aligned_cols=174 Identities=11% Similarity=0.038 Sum_probs=100.4
Q ss_pred HHHHHHHHhhhhhccccchHHHHHHHHHHHHHHHHhhcChhhHHHHHhCCChHHHHHhhcCCCCCccccCCCccchHHHh
Q 005044 55 LLSEVSAQVNVLNTTFSWLEADRAAAKRATHVLAELAKNEEVVNWIVEGGAVPALVKHLQAPPTSEADRNLKPFEHEVEK 134 (717)
Q Consensus 55 ~~~~i~~l~~~L~~~~~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~g~i~~L~~lL~~~~~~~~~~~~~~~~~~v~~ 134 (717)
....-..++.+|....-.+ .+...+.++.-++++......+.....+..|+.+-+-+... ..-+...|-.|..
T Consensus 43 r~eL~e~i~~Vle~~~p~t-----~~v~~LetvrILSRdk~~L~~~~~~q~~~~ll~~A~ls~~e--~sl~~v~d~~vi~ 115 (532)
T KOG4464|consen 43 RKELGERIFEVLENGEPLT-----HRVVCLETVRILSRDKDGLEPLTNDQLCQKLLALAELSSNE--NSLPTVADMHVIM 115 (532)
T ss_pred HHHHHHHHHHHHhcCCCch-----hhhhHHHHHHHHhccccccccccchHHHHHHHHHHHhcccc--CCCCcccchHHHH
Confidence 5566677788887764222 23444555555555443333222222345555554332221 1123333457889
Q ss_pred HHHHHHHHhc-CChhhHHHHHhCCChHHHHHHHhccccCCCccchhHHHHHHHHHHHHHhhcCchhhhH-HHhcCCcHHH
Q 005044 135 GSAFALGLLA-VKPEHQQLIVDNGALSHLVNLLKRHMDSNCSRAVNSVIRRAADAITNLAHENSSIKTR-VRMEGGIPPL 212 (717)
Q Consensus 135 ~a~~~L~~l~-~~~~~~~~~~~~~~i~~L~~lL~~~~~~~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~-~~~~~~i~~L 212 (717)
.++++|.|+. .++..|...........+++.+........+. .+...=++.|.-+..-....|.. +...+|++.+
T Consensus 116 EslKCLcNlvf~Sq~~q~~~~~~~~~~~ll~~v~~~~er~~~~---~~~~~dlrLLflltale~~~Rsql~~~l~Gl~~l 192 (532)
T KOG4464|consen 116 ESLKCLCNLVFHSQRAQDLFLENPLTGKLLQRVLGEFERNFPK---DSSIFDLRLLFLLTALETDHRSQLIAELLGLELL 192 (532)
T ss_pred HHHHHHHHHHhccHHHHHHHHhhhhHHHHHHHHHHHHHhcCCc---cchhhHHHHHHHHHHhhHHHHHHHHHHhcccHHH
Confidence 9999999999 99999999999888888887775543211111 23333344444444334445444 4567889999
Q ss_pred HHhhcCC---------C------HHHHHHHHHHHHHhhccC
Q 005044 213 VELLEFT---------D------TKVQRAAAGALRTLAFKN 238 (717)
Q Consensus 213 ~~ll~~~---------~------~~v~~~a~~~L~~L~~~~ 238 (717)
..++.++ + ......++.++.|++.+.
T Consensus 193 t~~led~lgidse~n~~~l~pqe~n~a~EaLK~~FNvt~~~ 233 (532)
T KOG4464|consen 193 TNWLEDKLGIDSEINVPPLNPQETNRACEALKVFFNVTCDS 233 (532)
T ss_pred HHHhhccccCCCCcCCCCCCHHHHHHHHHHHHHHhheeecc
Confidence 8888642 1 234456778888887643
No 233
>KOG0414 consensus Chromosome condensation complex Condensin, subunit D2 [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=93.98 E-value=0.65 Score=52.84 Aligned_cols=163 Identities=19% Similarity=0.209 Sum_probs=120.8
Q ss_pred ChHHHHHhhcCCCCCccccCCCccchHHHhHHHHHHHHhc-CChhhHHHHHhCCChHHHHHHHhccccCCCccchhHHHH
Q 005044 105 AVPALVKHLQAPPTSEADRNLKPFEHEVEKGSAFALGLLA-VKPEHQQLIVDNGALSHLVNLLKRHMDSNCSRAVNSVIR 183 (717)
Q Consensus 105 ~i~~L~~lL~~~~~~~~~~~~~~~~~~v~~~a~~~L~~l~-~~~~~~~~~~~~~~i~~L~~lL~~~~~~~~~~~~~~~~~ 183 (717)
..|.++..++.+.. +.+|+++..|.-+|+.+. -+.++. ...++.|...+....+. -++.
T Consensus 920 f~piv~e~c~n~~~--------~sdp~Lq~AAtLaL~klM~iSa~fc-----es~l~llftimeksp~p-------~IRs 979 (1251)
T KOG0414|consen 920 FAPIVVEGCRNPGL--------FSDPELQAAATLALGKLMCISAEFC-----ESHLPLLFTIMEKSPSP-------RIRS 979 (1251)
T ss_pred HHHHHHHHhcCCCc--------CCCHHHHHHHHHHHHHHhhhhHHHH-----HHHHHHHHHHHhcCCCc-------eeee
Confidence 46778888766543 346799999999999998 444432 23479999999866553 7888
Q ss_pred HHHHHHHHHhhcCchhhhHHHhcCCcHHHHHhhcCCCHHHHHHHHHHHHHhhccChhhHHHHHhcCCHHHHHHHHcCCCH
Q 005044 184 RAADAITNLAHENSSIKTRVRMEGGIPPLVELLEFTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSEDS 263 (717)
Q Consensus 184 ~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~g~i~~L~~ll~~~~~ 263 (717)
.++-+++.++...+..-. ..-+.|...|++.++.+|+.|..+|..|... .++--.|.+..+..++.++++
T Consensus 980 N~VvalgDlav~fpnlie-----~~T~~Ly~rL~D~~~~vRkta~lvlshLILn-----dmiKVKGql~eMA~cl~D~~~ 1049 (1251)
T KOG0414|consen 980 NLVVALGDLAVRFPNLIE-----PWTEHLYRRLRDESPSVRKTALLVLSHLILN-----DMIKVKGQLSEMALCLEDPNA 1049 (1251)
T ss_pred cchheccchhhhcccccc-----hhhHHHHHHhcCccHHHHHHHHHHHHHHHHh-----hhhHhcccHHHHHHHhcCCcH
Confidence 899999998876665432 2456888899999999999999999999862 233346889999999999999
Q ss_pred HHHHHHHHHHHHhhcCChHHHHHHHHcCChHHHHHhhccC
Q 005044 264 AIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLSSC 303 (717)
Q Consensus 264 ~v~~~a~~~L~~l~~~~~~~~~~~~~~g~l~~L~~ll~~~ 303 (717)
+++..|=.....|+...... ..++|-++.-|.+.
T Consensus 1050 ~IsdlAk~FF~Els~k~n~i------ynlLPdil~~Ls~~ 1083 (1251)
T KOG0414|consen 1050 EISDLAKSFFKELSSKGNTI------YNLLPDILSRLSNG 1083 (1251)
T ss_pred HHHHHHHHHHHHhhhcccch------hhhchHHHHhhccC
Confidence 99998888888886443211 34566666666654
No 234
>KOG2999 consensus Regulator of Rac1, required for phagocytosis and cell migration [Signal transduction mechanisms]
Probab=93.92 E-value=0.98 Score=46.96 Aligned_cols=164 Identities=14% Similarity=0.135 Sum_probs=114.4
Q ss_pred HHHHHHHhhhhhccccchHHHHHHHHHHHHHHHHhhcChhhHHHHHhCCChHHHHHhhcCCCCCccccCCCccchHHHhH
Q 005044 56 LSEVSAQVNVLNTTFSWLEADRAAAKRATHVLAELAKNEEVVNWIVEGGAVPALVKHLQAPPTSEADRNLKPFEHEVEKG 135 (717)
Q Consensus 56 ~~~i~~l~~~L~~~~~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~g~i~~L~~lL~~~~~~~~~~~~~~~~~~v~~~ 135 (717)
.....++.+.+.+. +...+..++..|..++.++.....++...++..|.+++.++..-. ..++...
T Consensus 82 ~~~a~~i~e~l~~~------~~~~~~~a~k~l~sls~d~~fa~efi~~~gl~~L~~liedg~~~~--------~~~~L~~ 147 (713)
T KOG2999|consen 82 SHYAKRIMEILTEG------NNISKMEALKELDSLSLDPTFAEEFIRCSGLELLFSLIEDGRVCM--------SSELLST 147 (713)
T ss_pred hHHHHHHHHHHhCC------CcHHHHHHHHHHhhccccHHHHHHHHhcchHHHHHHHHHcCccch--------HHHHHHH
Confidence 34556667777655 222366699999999999999999999999999999998865411 1166777
Q ss_pred HHHHHHHhcCChhhHHHHHhCCChHHHHHHHhccccCCCccchhHHHHHHHHHHHHHhhcCchhhhHHHhcCCcHHHHHh
Q 005044 136 SAFALGLLAVKPEHQQLIVDNGALSHLVNLLKRHMDSNCSRAVNSVIRRAADAITNLAHENSSIKTRVRMEGGIPPLVEL 215 (717)
Q Consensus 136 a~~~L~~l~~~~~~~~~~~~~~~i~~L~~lL~~~~~~~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~l 215 (717)
++.++..+-+..-..-..+...++..+..+.+....+. .+...|+..|-++...+...+..+.+.--+..|+..
T Consensus 148 ~L~af~elmehgvvsW~~~~~~fV~~~a~~V~~~~~~a------~~~~~AL~~LE~~vl~s~~~~~~v~eev~i~~li~h 221 (713)
T KOG2999|consen 148 SLRAFSELMEHGVVSWESVSNDFVVSMASYVNAKREDA------NTLLAALQMLESLVLGSDTLRQLVAEEVPIETLIRH 221 (713)
T ss_pred HHHHHHHHHhhceeeeeecccHHHHHHHHHHhhhhhcc------cchHHHHHHHHHHHhCChHHHHHHHhcCcHHHHHHH
Confidence 77777666522112222223344555555553322211 677889999999998788788888888889999999
Q ss_pred hcCCCHHHHHHHHHHHHHhhccCh
Q 005044 216 LEFTDTKVQRAAAGALRTLAFKND 239 (717)
Q Consensus 216 l~~~~~~v~~~a~~~L~~L~~~~~ 239 (717)
++..+..++..|...+..+....+
T Consensus 222 lq~~n~~i~~~aial~nal~~~a~ 245 (713)
T KOG2999|consen 222 LQVSNQRIQTCAIALLNALFRKAP 245 (713)
T ss_pred HHhcchHHHHHHHHHHHHHHhhCC
Confidence 999999999888877777765433
No 235
>KOG0511 consensus Ankyrin repeat protein [General function prediction only]
Probab=93.87 E-value=0.13 Score=50.27 Aligned_cols=89 Identities=24% Similarity=0.249 Sum_probs=60.0
Q ss_pred CCccEEEEE-cCeEeehhHHHHhhccHHHHHhhcCCCCCCCCcceEcCCCCHHHHHHHHHHHhcCccccchhhHHHHHHH
Q 005044 548 TLSDVTFLV-EGRRFYAHRICLLASSDAFRAMFDGGYREKDARDIEIPNIRWEVFELMMRFIYTGSVDVTLDIAQDLLRA 626 (717)
Q Consensus 548 ~~~Dv~~~~-~~~~~~~h~~il~~~s~~f~~~~~~~~~e~~~~~i~l~~~~~~~~~~~l~~~Yt~~~~~~~~~~~~ll~~ 626 (717)
...|+.+.. .|..|.+|+..++++|.+|..-+..-|..+ ..|+-..+-+..|..|++|+|-..-.+-......++.+
T Consensus 148 ~~~di~f~~q~g~~f~ahkfll~arSs~~~~k~v~~~~~~--heI~~~~v~~~~f~~flk~lyl~~na~~~~qynallsi 225 (516)
T KOG0511|consen 148 CCHDIDFLQQEGANFDAHKFLLEARSSNYFPKDVMFYVQG--HEIEAHRVILSAFSPFLKQLYLNTNAEWKDQYNALLSI 225 (516)
T ss_pred cccchHHHhhccccccHHHHHHHhhhcccCchhhhhcccc--CchhhhhhhHhhhhHHHHHHHHhhhhhhhhHHHHHHhh
Confidence 345777766 467888999999999998866554333222 34444457789999999999977333333334567777
Q ss_pred HHhhChHhHHHH
Q 005044 627 ADQYLLEGLKRL 638 (717)
Q Consensus 627 A~~~~~~~l~~~ 638 (717)
..+|+...|...
T Consensus 226 ~~kF~~e~l~~~ 237 (516)
T KOG0511|consen 226 EVKFSKEKLSLE 237 (516)
T ss_pred hhhccHHHhHHH
Confidence 777776665543
No 236
>KOG2956 consensus CLIP-associating protein [General function prediction only]
Probab=93.72 E-value=4.6 Score=41.49 Aligned_cols=146 Identities=14% Similarity=0.087 Sum_probs=91.5
Q ss_pred CcHHHHHhhcC-CCHHHHHHHHHHHHHhhccChhhHHHHHhcCCHHHHHHHHcCCCHHHHHHHHHHHH-HhhcCChHHHH
Q 005044 208 GIPPLVELLEF-TDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSEDSAIHYEAVGVIG-NLVHSSPNIKK 285 (717)
Q Consensus 208 ~i~~L~~ll~~-~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~v~~~a~~~L~-~l~~~~~~~~~ 285 (717)
++..+++.|.+ .+...+..|+++|..++...+..-..-.+ -++..+++.-.+.++++...|..... .++...+..+
T Consensus 330 iL~~l~EvL~d~~~~~~k~laLrvL~~ml~~Q~~~l~DstE-~ai~K~Leaa~ds~~~v~~~Aeed~~~~las~~P~~~- 407 (516)
T KOG2956|consen 330 ILLLLLEVLSDSEDEIIKKLALRVLREMLTNQPARLFDSTE-IAICKVLEAAKDSQDEVMRVAEEDCLTTLASHLPLQC- 407 (516)
T ss_pred HHHHHHHHHccchhhHHHHHHHHHHHHHHHhchHhhhchHH-HHHHHHHHHHhCCchhHHHHHHHHHHHHHHhhCchhH-
Confidence 44567778877 67889999999999999743322111111 23555666666777777666665543 3344444332
Q ss_pred HHHHcCChHHHHHhhccCChHHHHHHHHHHHHHhcCChhhHHHHHhcCChHHHHHHhcCCCHHHHHHHHHHHHHhhc
Q 005044 286 EVLAAGALQPVIGLLSSCCSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQSPDVQLREMSAFALGRLAQ 362 (717)
Q Consensus 286 ~~~~~g~l~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~l~~~~~l~~L~~~l~~~~~~v~~~a~~~L~~l~~ 362 (717)
|..+..++...+......+...+..+...-+.-....+-..+.|.+++.-.+....||+.++.+|..+..
T Consensus 408 -------I~~i~~~Ilt~D~~~~~~~iKm~Tkl~e~l~~EeL~~ll~diaP~~iqay~S~SS~VRKtaVfCLVamv~ 477 (516)
T KOG2956|consen 408 -------IVNISPLILTADEPRAVAVIKMLTKLFERLSAEELLNLLPDIAPCVIQAYDSTSSTVRKTAVFCLVAMVN 477 (516)
T ss_pred -------HHHHhhHHhcCcchHHHHHHHHHHHHHhhcCHHHHHHhhhhhhhHHHHHhcCchHHhhhhHHHhHHHHHH
Confidence 3344455555555555556666677653222211222236788999999999999999999999887753
No 237
>KOG2137 consensus Protein kinase [Signal transduction mechanisms]
Probab=93.59 E-value=1.3 Score=47.90 Aligned_cols=240 Identities=15% Similarity=0.110 Sum_probs=135.8
Q ss_pred CHHHHHHHHHHHHHhhccChhhHHHHHhcCCHHHHHHHHcCCCHHHHHHHHHHHHHhhcCChHHHHHHHHcCChHHHHHh
Q 005044 220 DTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSEDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGL 299 (717)
Q Consensus 220 ~~~v~~~a~~~L~~L~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~l~~L~~l 299 (717)
++.-+..-+..|..+.. ..-..+....++|.|+..+.+.. ..-..+-.+..++...+ +.......++.|...
T Consensus 286 dn~qKs~Flk~Ls~~ip---~fp~rv~~~kiLP~L~~el~n~~--~vp~~LP~v~~i~~~~s---~~~~~~~~~p~l~pi 357 (700)
T KOG2137|consen 286 DNSQKSSFLKGLSKLIP---TFPARVLFQKILPTLVAELVNTK--MVPIVLPLVLLIAEGLS---QNEFGPKMLPALKPI 357 (700)
T ss_pred CcHHHHHHHHHHHHhhc---cCCHHHHHHhhhhHHHHHhcccc--ccccccchhhhhhhccc---hhhhhhhhhHHHHHH
Confidence 34444445555555543 22223334456777777664321 11111111122221111 122233456666666
Q ss_pred hccCChHHHHHHHHHHHHHhcCChhhHHHHHhcCChHHHHHHhcCCCHHHHHHHHHHHHHhhcCCCCchhhHhcCChHHH
Q 005044 300 LSSCCSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQSPDVQLREMSAFALGRLAQDMHNQAGIAHNGGLVPL 379 (717)
Q Consensus 300 l~~~~~~~~~~a~~~L~~l~~~~~~~~~~l~~~~~l~~L~~~l~~~~~~v~~~a~~~L~~l~~~~~~~~~l~~~~~l~~L 379 (717)
++..++ ....+..+.++-.-.......-+...++|.|..-+++.+..+++.++..+...+..-+ ...+...+++.+
T Consensus 358 ~~~~~~--~~~~l~i~e~mdlL~~Kt~~e~~~~~IlplL~~S~~~~~~~iQ~~~L~~lptv~e~iD--~~~vk~~ilP~l 433 (700)
T KOG2137|consen 358 YSASDP--KQALLFILENMDLLKEKTPPEEVKEKILPLLYRSLEDSDVQIQELALQILPTVAESID--VPFVKQAILPRL 433 (700)
T ss_pred hccCCc--ccchhhHHhhHHHHHhhCChHHHHHHHHHHHHHHhcCcchhhHHHHHHhhhHHHHhcc--HHHHHHHHHHHh
Confidence 664221 1122233333311111222233445678888888999999999999999988886433 345555566666
Q ss_pred HHhh-cCCChhHHHHHHHHHHhccCCCcchHHHHHhcCccccccchhHHhhhHHHHHHHHHHHHHHhhhchHHHHHHHHh
Q 005044 380 LKLL-DSKNGSLQHNAAFALYGLADNEDNVADFIRVGGVQKLQDGEFIVQATKDCVAKTLKRLEEKIHGRVLNHLLYLMR 458 (717)
Q Consensus 380 ~~ll-~~~~~~v~~~a~~~L~~l~~~~~~~~~l~~~~~i~~L~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~L~~ll~ 458 (717)
..+. ++.+..++.+++.++..+...- -... --+.+..+....+
T Consensus 434 ~~l~~~tt~~~vkvn~L~c~~~l~q~l------D~~~------------------------------v~d~~lpi~~~~~ 477 (700)
T KOG2137|consen 434 KNLAFKTTNLYVKVNVLPCLAGLIQRL------DKAA------------------------------VLDELLPILKCIK 477 (700)
T ss_pred hcchhcccchHHHHHHHHHHHHHHHHH------HHHH------------------------------hHHHHHHHHHHhc
Confidence 5553 5677788888888888776211 1111 1113445666667
Q ss_pred hcchhHHHHHHHHHHhccCCCCCceeeecCCCHHHHHHHhcCCCchhhh
Q 005044 459 VAEKGVQRRVALALAHLCSPDDQRTIFIDGGGLELLLGLLGSTNPKQQL 507 (717)
Q Consensus 459 ~~~~~v~~~a~~aL~~l~~~~~~~~~~~~~~~l~~L~~ll~~~~~~v~~ 507 (717)
..+|.+....+++..++.......+.+....++|.++.+...+.-...+
T Consensus 478 ~~dp~iv~~~~~i~~~l~~~~~~g~ev~~~~VlPlli~ls~~~~L~~~Q 526 (700)
T KOG2137|consen 478 TRDPAIVMGFLRIYEALALIIYSGVEVMAENVLPLLIPLSVAPSLNGEQ 526 (700)
T ss_pred CCCcHHHHHHHHHHHHHHhhcccceeeehhhhhhhhhhhhhcccccHHH
Confidence 7899999999988888876655546677788999999888776644443
No 238
>KOG2715 consensus Uncharacterized conserved protein, contains BTB/POZ domain [General function prediction only]
Probab=93.53 E-value=1.1 Score=38.67 Aligned_cols=97 Identities=15% Similarity=0.168 Sum_probs=73.3
Q ss_pred ccEEEEEcCeEeehhHHHHhhccHHH-HHhhcCCCC---CCCCcceEcCCCCHHHHHHHHHHHhcCccccchhhHHHHHH
Q 005044 550 SDVTFLVEGRRFYAHRICLLASSDAF-RAMFDGGYR---EKDARDIEIPNIRWEVFELMMRFIYTGSVDVTLDIAQDLLR 625 (717)
Q Consensus 550 ~Dv~~~~~~~~~~~h~~il~~~s~~f-~~~~~~~~~---e~~~~~i~l~~~~~~~~~~~l~~~Yt~~~~~~~~~~~~ll~ 625 (717)
.=|.+.++|..|-.-|.-|+--+.-| ..+...... .....--.+-|=+|.-|..+|+|+-.|++-++.-.-..++.
T Consensus 21 ~wVRlNVGGt~f~TtktTl~rdp~sFl~rl~q~~~~l~sdrDetGAYlIDRDP~~FgpvLNylRhgklvl~~l~eeGvL~ 100 (210)
T KOG2715|consen 21 LWVRLNVGGTVFLTTKTTLPRDPKSFLYRLCQREKDLPSDRDETGAYLIDRDPFYFGPVLNYLRHGKLVLNKLSEEGVLE 100 (210)
T ss_pred EEEEEecCCEEEEeeeeccccCcHHHHHHHHhcccCCCCCccccCceEeccCcchHHHHHHHHhcchhhhhhhhhhccch
Confidence 34667789999999999888877444 444443321 11222334446789999999999999999988866678999
Q ss_pred HHHhhChHhHHHHHHHHHHhc
Q 005044 626 AADQYLLEGLKRLCEYTIAQD 646 (717)
Q Consensus 626 ~A~~~~~~~l~~~c~~~l~~~ 646 (717)
=|++|.++.|.....+.+...
T Consensus 101 EAefyn~~~li~likd~i~dR 121 (210)
T KOG2715|consen 101 EAEFYNDPSLIQLIKDRIQDR 121 (210)
T ss_pred hhhccCChHHHHHHHHHHHHH
Confidence 999999999999988877764
No 239
>PF04063 DUF383: Domain of unknown function (DUF383); InterPro: IPR007205 This is a protein of unknown function. It is found N-terminal to another domain of unknown function (IPR007206 from INTERPRO).
Probab=93.52 E-value=0.18 Score=46.07 Aligned_cols=126 Identities=18% Similarity=0.144 Sum_probs=84.5
Q ss_pred CCHHHHHHHHHHHHHhhcCCCCchhhHh----------------cCChHHHHHhhcC------CChhHHHHHHHHHHhcc
Q 005044 345 PDVQLREMSAFALGRLAQDMHNQAGIAH----------------NGGLVPLLKLLDS------KNGSLQHNAAFALYGLA 402 (717)
Q Consensus 345 ~~~~v~~~a~~~L~~l~~~~~~~~~l~~----------------~~~l~~L~~ll~~------~~~~v~~~a~~~L~~l~ 402 (717)
++......++..|+|+++.......+.. ...+..|++++.. ....-....+.++.|++
T Consensus 7 ~~~~~adl~~MLLsNlT~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~l~~Ll~~F~~g~~~~~n~~~~~~yla~vl~NlS 86 (192)
T PF04063_consen 7 PKSPLADLACMLLSNLTRSDSGCEKLLQLKRESSSQAPKEVSLSGFYLDKLLDLFVKGADPSYNKKDNYDYLASVLANLS 86 (192)
T ss_pred CCcchHHHHHHHHHHhccchHHHHHHHhcccccccccccccchhHHHHHHHHHHHHcCCcccCCCCcchhHHHHHHHHhc
Confidence 3444555677788888876655443322 2345556666643 23445678889999999
Q ss_pred CCCcchHHHHHhcCccccccchhHHhhhHHHHHHHHHHHHHHhhhchHHHHHHHHhhcchhHHHHHHHHHHhccCCCCCc
Q 005044 403 DNEDNVADFIRVGGVQKLQDGEFIVQATKDCVAKTLKRLEEKIHGRVLNHLLYLMRVAEKGVQRRVALALAHLCSPDDQR 482 (717)
Q Consensus 403 ~~~~~~~~l~~~~~i~~L~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~ 482 (717)
..++.+..|.+..-.. +.+..|+.++.+.+..-|.-++.+|.|+|-..+..
T Consensus 87 ~~~~gR~~~l~~~~~~-----------------------------~~l~kLl~ft~~~s~iRR~Gva~~IrNccFd~~~H 137 (192)
T PF04063_consen 87 QLPEGRQFFLDPQRYD-----------------------------GPLQKLLPFTEHKSVIRRGGVAGTIRNCCFDTDSH 137 (192)
T ss_pred CCHHHHHHHhCchhhh-----------------------------hHHHHHHHHhccCcHHHHHHHHHHHHHhhccHhHH
Confidence 9999988888643100 03677888888887777888999999999988866
Q ss_pred eeeecC---CCHHHHHHHhc
Q 005044 483 TIFIDG---GGLELLLGLLG 499 (717)
Q Consensus 483 ~~~~~~---~~l~~L~~ll~ 499 (717)
..++.. +.+|.|+--+.
T Consensus 138 ~~LL~~~~~~iLp~LLlPLa 157 (192)
T PF04063_consen 138 EWLLSDDEVDILPYLLLPLA 157 (192)
T ss_pred HHhcCchhhhhHHHHHhhcc
Confidence 655553 45565554444
No 240
>KOG0414 consensus Chromosome condensation complex Condensin, subunit D2 [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=93.30 E-value=0.73 Score=52.42 Aligned_cols=145 Identities=17% Similarity=0.179 Sum_probs=107.2
Q ss_pred HHHHHHHHHHHHHhhcCchhhhHHHhcCCcHHHHHhhc-CCCHHHHHHHHHHHHHhhccChhhHHHHHhcCCHHHHHHHH
Q 005044 180 SVIRRAADAITNLAHENSSIKTRVRMEGGIPPLVELLE-FTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILML 258 (717)
Q Consensus 180 ~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~-~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~g~i~~L~~ll 258 (717)
+++..|.-+|+.++.-+..... ..+|.|+..+. ++++.+|.++.-+++-++...+...+. ..+.|..-|
T Consensus 938 ~Lq~AAtLaL~klM~iSa~fce-----s~l~llftimeksp~p~IRsN~VvalgDlav~fpnlie~-----~T~~Ly~rL 1007 (1251)
T KOG0414|consen 938 ELQAAATLALGKLMCISAEFCE-----SHLPLLFTIMEKSPSPRIRSNLVVALGDLAVRFPNLIEP-----WTEHLYRRL 1007 (1251)
T ss_pred HHHHHHHHHHHHHhhhhHHHHH-----HHHHHHHHHHhcCCCceeeecchheccchhhhcccccch-----hhHHHHHHh
Confidence 7888888888888764443322 34678888886 789999999999999888644433222 346688889
Q ss_pred cCCCHHHHHHHHHHHHHhhcCChHHHHHHHHcCChHHHHHhhccCChHHHHHHHHHHHHHhcCChhhHHHHHhcCChHHH
Q 005044 259 RSEDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLSSCCSESQREAALLLGQFAATDSDCKVHIVQRGAVRPL 338 (717)
Q Consensus 259 ~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~l~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~l~~~~~l~~L 338 (717)
+++++.||..|+-+|.+|... ..+--.|.+..+..++.+++.+++.-|=...-.++..... + .+++|.+
T Consensus 1008 ~D~~~~vRkta~lvlshLILn-----dmiKVKGql~eMA~cl~D~~~~IsdlAk~FF~Els~k~n~----i--ynlLPdi 1076 (1251)
T KOG0414|consen 1008 RDESPSVRKTALLVLSHLILN-----DMIKVKGQLSEMALCLEDPNAEISDLAKSFFKELSSKGNT----I--YNLLPDI 1076 (1251)
T ss_pred cCccHHHHHHHHHHHHHHHHh-----hhhHhcccHHHHHHHhcCCcHHHHHHHHHHHHHhhhcccc----h--hhhchHH
Confidence 999999999999999999643 3334478899999999999998888777777777643311 1 3467777
Q ss_pred HHHhcCC
Q 005044 339 IEMLQSP 345 (717)
Q Consensus 339 ~~~l~~~ 345 (717)
+..|.++
T Consensus 1077 l~~Ls~~ 1083 (1251)
T KOG0414|consen 1077 LSRLSNG 1083 (1251)
T ss_pred HHhhccC
Confidence 7777664
No 241
>PF14668 RICTOR_V: Rapamycin-insensitive companion of mTOR, domain 5
Probab=93.17 E-value=0.58 Score=34.89 Aligned_cols=67 Identities=18% Similarity=0.299 Sum_probs=56.4
Q ss_pred HHHHHHHHHHhhcChhhHHHHHhCCChHHHHHhhcCCCCCccccCCCccchHHHhHHHHHHHHhcCChhhHHHHHhCC
Q 005044 80 AKRATHVLAELAKNEEVVNWIVEGGAVPALVKHLQAPPTSEADRNLKPFEHEVEKGSAFALGLLAVKPEHQQLIVDNG 157 (717)
Q Consensus 80 ~~~a~~~L~~l~~~~~~~~~~~~~g~i~~L~~lL~~~~~~~~~~~~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~ 157 (717)
...++|++++++.++.-...+.+.+.++.++++.+..+.- .+|-.|..+|+-++...+..+.+.+.|
T Consensus 4 lKaaLWaighIgss~~G~~lL~~~~iv~~iv~~a~~s~v~-----------siRGT~fy~Lglis~T~~G~~~L~~~g 70 (73)
T PF14668_consen 4 LKAALWAIGHIGSSPLGIQLLDESDIVEDIVKIAENSPVL-----------SIRGTCFYVLGLISSTEEGAEILDELG 70 (73)
T ss_pred HHHHHHHHHhHhcChHHHHHHhhcCHHHHHHHHHHhCCcc-----------chHHHHHHHHHHHhCCHHHHHHHHHcC
Confidence 5789999999999877777777789999999999876552 899999999999998888877776655
No 242
>KOG2025 consensus Chromosome condensation complex Condensin, subunit G [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=93.13 E-value=13 Score=40.51 Aligned_cols=103 Identities=20% Similarity=0.123 Sum_probs=67.9
Q ss_pred CChHHHHHhhcCCCCCccccCCCccchHHHhHHHHHHHHhcCChhhHHHHHhCCChHHHHHHHhccccCCCccchhHHHH
Q 005044 104 GAVPALVKHLQAPPTSEADRNLKPFEHEVEKGSAFALGLLAVKPEHQQLIVDNGALSHLVNLLKRHMDSNCSRAVNSVIR 183 (717)
Q Consensus 104 g~i~~L~~lL~~~~~~~~~~~~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~i~~L~~lL~~~~~~~~~~~~~~~~~ 183 (717)
|.+..+++-.++.+. .||-.++..|..+.+.....+..+..+....+..-+.+..+ .++.
T Consensus 85 ~~f~hlLRg~Eskdk------------~VRfrvlqila~l~d~~~eidd~vfn~l~e~l~~Rl~Drep--------~VRi 144 (892)
T KOG2025|consen 85 GTFYHLLRGTESKDK------------KVRFRVLQILALLSDENAEIDDDVFNKLNEKLLIRLKDREP--------NVRI 144 (892)
T ss_pred HHHHHHHhcccCcch------------hHHHHHHHHHHHHhccccccCHHHHHHHHHHHHHHHhccCc--------hHHH
Confidence 334455555555555 99999999999999644444444555666667666666665 8999
Q ss_pred HHHHHHHHHhhcCchhhhHHHhcCCcHHHHHhhc-CCCHHHHHHHHHHH
Q 005044 184 RAADAITNLAHENSSIKTRVRMEGGIPPLVELLE-FTDTKVQRAAAGAL 231 (717)
Q Consensus 184 ~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~-~~~~~v~~~a~~~L 231 (717)
.|+.+|..+-.+.. .. +..++..+..+++ +++++||+.|+..+
T Consensus 145 qAv~aLsrlQ~d~~-de----e~~v~n~l~~liqnDpS~EVRRaaLsnI 188 (892)
T KOG2025|consen 145 QAVLALSRLQGDPK-DE----ECPVVNLLKDLIQNDPSDEVRRAALSNI 188 (892)
T ss_pred HHHHHHHHHhcCCC-CC----cccHHHHHHHHHhcCCcHHHHHHHHHhh
Confidence 99999998874211 11 1124556777775 47899999776543
No 243
>KOG1243 consensus Protein kinase [General function prediction only]
Probab=93.08 E-value=0.77 Score=49.40 Aligned_cols=228 Identities=15% Similarity=0.119 Sum_probs=135.0
Q ss_pred hHHHHHhcCCHHHHHHHHcCCC--HHHHHHHHHHHHHhhcCChHHHHHHHHcCChHHHHHhhccCChHHHHHHHHHHHHH
Q 005044 241 NKNQIVECNALPTLILMLRSED--SAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLSSCCSESQREAALLLGQF 318 (717)
Q Consensus 241 ~~~~~~~~g~i~~L~~ll~~~~--~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~l~~L~~ll~~~~~~~~~~a~~~L~~l 318 (717)
..+.++...+++.|+..+.-++ ..+....+..-.-+ ...+ ...++++.+++++...+..+|...+.-+.+.
T Consensus 285 ~pe~i~~~kvlp~Ll~~~~~g~a~~~~ltpl~k~~k~l-d~~e------yq~~i~p~l~kLF~~~Dr~iR~~LL~~i~~~ 357 (690)
T KOG1243|consen 285 FPEEIIASKVLPILLAALEFGDAASDFLTPLFKLGKDL-DEEE------YQVRIIPVLLKLFKSPDRQIRLLLLQYIEKY 357 (690)
T ss_pred hhHHHHHHHHHHHHHHHhhccccchhhhhHHHHhhhhc-cccc------cccchhhhHHHHhcCcchHHHHHHHHhHHHH
Confidence 3344555556677766665444 22222222222222 1111 5567899999999999988887666555555
Q ss_pred hcCChhhHHHHHhcCChHHHHHHhcCCCHHHHHHHHHHHHHhhcCCCCchhhHhcCChHHHHHhhcCCChhHHHHHHHHH
Q 005044 319 AATDSDCKVHIVQRGAVRPLIEMLQSPDVQLREMSAFALGRLAQDMHNQAGIAHNGGLVPLLKLLDSKNGSLQHNAAFAL 398 (717)
Q Consensus 319 ~~~~~~~~~~l~~~~~l~~L~~~l~~~~~~v~~~a~~~L~~l~~~~~~~~~l~~~~~l~~L~~ll~~~~~~v~~~a~~~L 398 (717)
. +.....+++..++|.+..-+.+.++.+|+..+.++..|+.--..+ ......+..+-++-.+.+..++.+..-+|
T Consensus 358 i---~~Lt~~~~~d~I~phv~~G~~DTn~~Lre~Tlksm~~La~kL~~~--~Ln~Ellr~~ar~q~d~~~~irtntticl 432 (690)
T KOG1243|consen 358 I---DHLTKQILNDQIFPHVALGFLDTNATLREQTLKSMAVLAPKLSKR--NLNGELLRYLARLQPDEHGGIRTNTTICL 432 (690)
T ss_pred h---hhcCHHhhcchhHHHHHhhcccCCHHHHHHHHHHHHHHHhhhchh--hhcHHHHHHHHhhCccccCcccccceeee
Confidence 3 333455778889999999999999999999999998887521111 22222344444444566777888888888
Q ss_pred HhccCCCcchHHHHHhcCccccccchhHHhhhHHHHHHHHHHHHHHhhhchHHHHHHHHhhcchhHHHHHHHHHHhccCC
Q 005044 399 YGLADNEDNVADFIRVGGVQKLQDGEFIVQATKDCVAKTLKRLEEKIHGRVLNHLLYLMRVAEKGVQRRVALALAHLCSP 478 (717)
Q Consensus 399 ~~l~~~~~~~~~l~~~~~i~~L~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~L~~ll~~~~~~v~~~a~~aL~~l~~~ 478 (717)
..++...... .+.+++ ..+...-++++-+.-|..+..++......
T Consensus 433 gki~~~l~~~---~R~~vL--------------------------------~~aftralkdpf~paR~a~v~~l~at~~~ 477 (690)
T KOG1243|consen 433 GKIAPHLAAS---VRKRVL--------------------------------ASAFTRALKDPFVPARKAGVLALAATQEY 477 (690)
T ss_pred cccccccchh---hhcccc--------------------------------chhhhhhhcCCCCCchhhhhHHHhhcccc
Confidence 8877542211 122211 11233345555556666666666655544
Q ss_pred CCCceeeecCCCHHHHHHHhcCCCchhhhhhHHHHHHhh
Q 005044 479 DDQRTIFIDGGGLELLLGLLGSTNPKQQLDGAVALFKLA 517 (717)
Q Consensus 479 ~~~~~~~~~~~~l~~L~~ll~~~~~~v~~~a~~~l~~L~ 517 (717)
-+.... ...++|.+..+.-+.+..++..|-.++....
T Consensus 478 ~~~~~v--a~kIlp~l~pl~vd~e~~vr~~a~~~i~~fl 514 (690)
T KOG1243|consen 478 FDQSEV--ANKILPSLVPLTVDPEKTVRDTAEKAIRQFL 514 (690)
T ss_pred cchhhh--hhhccccccccccCcccchhhHHHHHHHHHH
Confidence 332221 3445666776766777667666666555443
No 244
>COG5209 RCD1 Uncharacterized protein involved in cell differentiation/sexual development [General function prediction only]
Probab=92.66 E-value=1.7 Score=39.74 Aligned_cols=149 Identities=11% Similarity=0.084 Sum_probs=100.9
Q ss_pred HHHHHHHHHHhhcChhhHHHHHhCCChHHHHHhhcCCCCCccccCCCccchHHHhHHHHHHHHhc--CChhhHHHHHhCC
Q 005044 80 AKRATHVLAELAKNEEVVNWIVEGGAVPALVKHLQAPPTSEADRNLKPFEHEVEKGSAFALGLLA--VKPEHQQLIVDNG 157 (717)
Q Consensus 80 ~~~a~~~L~~l~~~~~~~~~~~~~g~i~~L~~lL~~~~~~~~~~~~~~~~~~v~~~a~~~L~~l~--~~~~~~~~~~~~~ 157 (717)
...|+..|.-++++|+.+..+.++..--.+...|...+.... -.-+|..++.+++.+. ++++....+....
T Consensus 117 vcnaL~lLQclaShPetk~~Fl~AhiplflypfLntss~~~~-------fEyLRltsLGVIgaLvkNdsq~vi~fLltTe 189 (315)
T COG5209 117 VCNALNLLQCLASHPETKKVFLDAHIPLFLYPFLNTSSSNSK-------FEYLRLTSLGVIGALVKNDSQYVIKFLLTTE 189 (315)
T ss_pred HHHHHHHHHHHhcCcchheeeeecccceeeHhhhhccccCCc-------cceeeehHHHHHHHHHhCCCHHHHHHHHhhh
Confidence 678888888899999999999888876677777766554211 1168889999999999 7788888888999
Q ss_pred ChHHHHHHHhccccCCCccchhHHHHHHHHHHHHHhhcCchhhhHHH-------hcCCcHHHHH-hhcCCCHHHHHHHHH
Q 005044 158 ALSHLVNLLKRHMDSNCSRAVNSVIRRAADAITNLAHENSSIKTRVR-------MEGGIPPLVE-LLEFTDTKVQRAAAG 229 (717)
Q Consensus 158 ~i~~L~~lL~~~~~~~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~-------~~~~i~~L~~-ll~~~~~~v~~~a~~ 229 (717)
++|..++++..... --+..++.++..+..++........ -...+..++. +...+...+...+++
T Consensus 190 ivPLcLrIme~gSE--------lSktvaifI~qkil~dDvGLqYiCqT~eRFyAv~~vln~mv~qlVs~~~~RLlKh~iR 261 (315)
T COG5209 190 IVPLCLRIMELGSE--------LSKTVAIFIFQKILGDDVGLQYICQTFERFYAVNLVLNSMVSQLVSLGSTRLLKHAIR 261 (315)
T ss_pred HHHHHHHHHHhhhH--------HHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHHHHHHHHHHhhccchhHHHHHHH
Confidence 99999999987654 4556677777666654443322111 0112223332 233456677778888
Q ss_pred HHHHhhccChhhHHH
Q 005044 230 ALRTLAFKNDENKNQ 244 (717)
Q Consensus 230 ~L~~L~~~~~~~~~~ 244 (717)
+-..|+. ++..+..
T Consensus 262 cYlRLsd-~p~aR~l 275 (315)
T COG5209 262 CYLRLSD-KPHARAL 275 (315)
T ss_pred HheeecC-CHhHHHH
Confidence 8777774 5544443
No 245
>KOG1778 consensus CREB binding protein/P300 and related TAZ Zn-finger proteins [Transcription]
Probab=92.17 E-value=0.11 Score=51.07 Aligned_cols=140 Identities=18% Similarity=0.185 Sum_probs=109.0
Q ss_pred cEEEEEcCeEeehhHHHHhhccHHHHHhhcCCCCCCCCcceEcCCCCHHHHHHHHHHHhcCccccchhh--HHHHHHHHH
Q 005044 551 DVTFLVEGRRFYAHRICLLASSDAFRAMFDGGYREKDARDIEIPNIRWEVFELMMRFIYTGSVDVTLDI--AQDLLRAAD 628 (717)
Q Consensus 551 Dv~~~~~~~~~~~h~~il~~~s~~f~~~~~~~~~e~~~~~i~l~~~~~~~~~~~l~~~Yt~~~~~~~~~--~~~ll~~A~ 628 (717)
+..+...+..+++|+.++...|+.|..+....-..+..+.+.+...+...+..+.+++|.. ++-.+.+ ...++.+..
T Consensus 28 ~~~~~~~~~~~~~~s~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~l~~~-~ek~e~~~~~ihll~~~~ 106 (319)
T KOG1778|consen 28 VEIVTDVKDLIPAHSLVLGPASPVFKKVLKQPCRKSLVKGNKILGVPCKAVNVFIRFLYSS-LEKHEMVFFDIHLLALSH 106 (319)
T ss_pred hhhhhhhhhhhHHHHhcccccchHHHHHHhhhcchhhhhcceeecccccccchhhhhhccc-hhhhHHHHHHHHHHhhhh
Confidence 4444556688999999999999988877654422333456677778889999999999999 5444443 345566667
Q ss_pred hhChHhHHHHHHHHHHh-cCChhcHHHHHHHHHHcCcHHHHHHHHHHHHHhHHHhcCCchhhhc
Q 005044 629 QYLLEGLKRLCEYTIAQ-DISLENVSSMYELSEAFHAISLRHTCILYIMEHFDKLSTRPGHSNL 691 (717)
Q Consensus 629 ~~~~~~l~~~c~~~l~~-~i~~~n~~~~~~~a~~~~~~~L~~~~~~~i~~~~~~~~~~~~f~~l 691 (717)
.|.++..+..|...+.. .++..+++..+..+..|....|...+...+...|....+++.+...
T Consensus 107 ~~~v~~~~~d~~~~~~~~~~~~r~~flvl~~~~~~~~~~lr~a~hss~~~~~~~H~~t~~~~~~ 170 (319)
T KOG1778|consen 107 VYVVPQPKADCDPILECGLFDKRNVFLVLQLAEHCDFSDLRRAKHSSIMLLFDLHLQTEKWFAY 170 (319)
T ss_pred hhhccCccccCCccccchhhhhHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHhcccCceee
Confidence 88999999998777765 4678899999999999999999999999999999999887655543
No 246
>COG5098 Chromosome condensation complex Condensin, subunit D2 [Chromatin structure and dynamics / Cell division and chromosome partitioning]
Probab=92.10 E-value=2.7 Score=45.20 Aligned_cols=130 Identities=16% Similarity=0.133 Sum_probs=95.8
Q ss_pred CCHHHHHHHHHHHHHhhcCChHHHHHHHHcCChHHHHHhhc-cCChHHHHHHHHHHHHHhcCChhhHHHHHhcCChHHHH
Q 005044 261 EDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLS-SCCSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLI 339 (717)
Q Consensus 261 ~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~l~~L~~ll~-~~~~~~~~~a~~~L~~l~~~~~~~~~~l~~~~~l~~L~ 339 (717)
+++.++..|.-+|..+..-+.... ..-+|.++..+. ++.|.+|..|...++.++......... ....|.
T Consensus 908 sd~~lq~aA~l~L~klMClS~~fc-----~ehlpllIt~mek~p~P~IR~NaVvglgD~~vcfN~~~de-----~t~yLy 977 (1128)
T COG5098 908 SDEELQVAAYLSLYKLMCLSFEFC-----SEHLPLLITSMEKHPIPRIRANAVVGLGDFLVCFNTTADE-----HTHYLY 977 (1128)
T ss_pred CCHHHHHHHHHHHHHHHHHhHHHH-----HHHHHHHHHHHhhCCCcceeccceeeccccceehhhhhHH-----HHHHHH
Confidence 578888888888888754333322 235788888887 788999999998888876433332222 245688
Q ss_pred HHhcCCCHHHHHHHHHHHHHhhcCCCCchhhHhcCChHHHHHhhcCCChhHHHHHHHHHHhccCC
Q 005044 340 EMLQSPDVQLREMSAFALGRLAQDMHNQAGIAHNGGLVPLLKLLDSKNGSLQHNAAFALYGLADN 404 (717)
Q Consensus 340 ~~l~~~~~~v~~~a~~~L~~l~~~~~~~~~l~~~~~l~~L~~ll~~~~~~v~~~a~~~L~~l~~~ 404 (717)
.-|.+.+..|++.+..++..|.-.. .+.-.|-++.+..+|.+.+.++...|-..+..++..
T Consensus 978 rrL~De~~~V~rtclmti~fLilag----q~KVKGqlg~ma~~L~deda~Isdmar~fft~~a~K 1038 (1128)
T COG5098 978 RRLGDEDADVRRTCLMTIHFLILAG----QLKVKGQLGKMALLLTDEDAEISDMARHFFTQIAKK 1038 (1128)
T ss_pred HHhcchhhHHHHHHHHHHHHHHHcc----ceeeccchhhhHhhccCCcchHHHHHHHHHHHHHhc
Confidence 8888999999999999999987532 222345677788889999999988888888888754
No 247
>PF12530 DUF3730: Protein of unknown function (DUF3730) ; InterPro: IPR022542 This domain is found in eukaryotes, and is typically between 220 and 262 amino acids in length.
Probab=91.98 E-value=12 Score=35.86 Aligned_cols=137 Identities=23% Similarity=0.223 Sum_probs=90.0
Q ss_pred HHHHH-hhcCCCHHHHHHHHHHHHHhhccChhhHHHHHhcCCHHHHHHHHcCCCHHHHHHHHHHHHHhhcCChHHHHHHH
Q 005044 210 PPLVE-LLEFTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSEDSAIHYEAVGVIGNLVHSSPNIKKEVL 288 (717)
Q Consensus 210 ~~L~~-ll~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~ 288 (717)
+.|+. .-+..+++.+...+.+|..++.++..+... ++..|..+...+..+.+..+.+.+..+...++...
T Consensus 3 ~~L~~~l~~~~~~~~~~~~L~~L~~l~~~~~~~~~~-----v~~~L~~L~~~~~~~~~~~~~rLl~~lw~~~~r~f---- 73 (234)
T PF12530_consen 3 PLLLYKLGKISDPELQLPLLEALPSLACHKNVCVPP-----VLQTLVSLVEQGSLELRYVALRLLTLLWKANDRHF---- 73 (234)
T ss_pred HHHHHHhcCCCChHHHHHHHHHHHHHhccCccchhH-----HHHHHHHHHcCCchhHHHHHHHHHHHHHHhCchHH----
Confidence 34444 445678999999999999999754222222 34567777777777777777788877765544321
Q ss_pred HcCChHHHHHh--------hc--cCChHHHHHHHHHHHHHhcCChhhHHHHHhcCChHHHHHHh-cCCCHHHHHHHHHHH
Q 005044 289 AAGALQPVIGL--------LS--SCCSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEML-QSPDVQLREMSAFAL 357 (717)
Q Consensus 289 ~~g~l~~L~~l--------l~--~~~~~~~~~a~~~L~~l~~~~~~~~~~l~~~~~l~~L~~~l-~~~~~~v~~~a~~~L 357 (717)
+.+..++.. .. +...+.....+..+..+|...++... .+++.+...+ ++.++.++..++.+|
T Consensus 74 --~~L~~~L~~~~~r~~~~~~~~~~~~~~~i~~a~s~~~ic~~~p~~g~-----~ll~~ls~~L~~~~~~~~~alale~l 146 (234)
T PF12530_consen 74 --PFLQPLLLLLILRIPSSFSSKDEFWECLISIAASIRDICCSRPDHGV-----DLLPLLSGCLNQSCDEVAQALALEAL 146 (234)
T ss_pred --HHHHHHHHHHHhhcccccCCCcchHHHHHHHHHHHHHHHHhChhhHH-----HHHHHHHHHHhccccHHHHHHHHHHH
Confidence 223333333 01 12244555556788888877776333 3467788888 788888999999999
Q ss_pred HHhhc
Q 005044 358 GRLAQ 362 (717)
Q Consensus 358 ~~l~~ 362 (717)
..||.
T Consensus 147 ~~Lc~ 151 (234)
T PF12530_consen 147 APLCE 151 (234)
T ss_pred HHHHH
Confidence 99994
No 248
>KOG2999 consensus Regulator of Rac1, required for phagocytosis and cell migration [Signal transduction mechanisms]
Probab=91.76 E-value=4.3 Score=42.52 Aligned_cols=157 Identities=15% Similarity=0.187 Sum_probs=111.9
Q ss_pred HHHHHhhcCCCCCccccCCCccchHHHhHHHHHHHHhcCChhhHHHHHhCCChHHHHHHHhccccCCCccchhHHHHHHH
Q 005044 107 PALVKHLQAPPTSEADRNLKPFEHEVEKGSAFALGLLAVKPEHQQLIVDNGALSHLVNLLKRHMDSNCSRAVNSVIRRAA 186 (717)
Q Consensus 107 ~~L~~lL~~~~~~~~~~~~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~i~~L~~lL~~~~~~~~~~~~~~~~~~a~ 186 (717)
..+.+++.+++. .-+..++..|..++.++.....+....++..|..++.+....... ++...++
T Consensus 86 ~~i~e~l~~~~~------------~~~~~a~k~l~sls~d~~fa~efi~~~gl~~L~~liedg~~~~~~----~~L~~~L 149 (713)
T KOG2999|consen 86 KRIMEILTEGNN------------ISKMEALKELDSLSLDPTFAEEFIRCSGLELLFSLIEDGRVCMSS----ELLSTSL 149 (713)
T ss_pred HHHHHHHhCCCc------------HHHHHHHHHHhhccccHHHHHHHHhcchHHHHHHHHHcCccchHH----HHHHHHH
Confidence 456677777766 667779999999998899999999999999999999887652111 6666677
Q ss_pred HHHHHHhhcCchhhhHHHhcCCcHHHHHhh--cCCCHHHHHHHHHHHHHhhccChhhHHHHHhcCCHHHHHHHHcCCCHH
Q 005044 187 DAITNLAHENSSIKTRVRMEGGIPPLVELL--EFTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSEDSA 264 (717)
Q Consensus 187 ~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll--~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~ 264 (717)
.++..+....- ..-......++.....+. +.-+..+-..|+..|-++...++.....+.+.--+..|+..++..+..
T Consensus 150 ~af~elmehgv-vsW~~~~~~fV~~~a~~V~~~~~~a~~~~~AL~~LE~~vl~s~~~~~~v~eev~i~~li~hlq~~n~~ 228 (713)
T KOG2999|consen 150 RAFSELMEHGV-VSWESVSNDFVVSMASYVNAKREDANTLLAALQMLESLVLGSDTLRQLVAEEVPIETLIRHLQVSNQR 228 (713)
T ss_pred HHHHHHHhhce-eeeeecccHHHHHHHHHHhhhhhcccchHHHHHHHHHHHhCChHHHHHHHhcCcHHHHHHHHHhcchH
Confidence 76666654322 110111112233333333 223456778899999999987777788888888899999999999999
Q ss_pred HHHHHHHHHHHhhcCC
Q 005044 265 IHYEAVGVIGNLVHSS 280 (717)
Q Consensus 265 v~~~a~~~L~~l~~~~ 280 (717)
++..|...+..+....
T Consensus 229 i~~~aial~nal~~~a 244 (713)
T KOG2999|consen 229 IQTCAIALLNALFRKA 244 (713)
T ss_pred HHHHHHHHHHHHHhhC
Confidence 9998888888776543
No 249
>COG5116 RPN2 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=91.43 E-value=0.99 Score=47.07 Aligned_cols=128 Identities=21% Similarity=0.220 Sum_probs=85.7
Q ss_pred HHHHhcCCCHHHHHHHHHHHHHhhcCCCCchhhHhcCChHHHHHh-hcCCChhHHHHHHHHHHhccCCCcchHHHHHhcC
Q 005044 338 LIEMLQSPDVQLREMSAFALGRLAQDMHNQAGIAHNGGLVPLLKL-LDSKNGSLQHNAAFALYGLADNEDNVADFIRVGG 416 (717)
Q Consensus 338 L~~~l~~~~~~v~~~a~~~L~~l~~~~~~~~~l~~~~~l~~L~~l-l~~~~~~v~~~a~~~L~~l~~~~~~~~~l~~~~~ 416 (717)
+-+++.+.++-+|.....++.---.+.. +.+++..++.. ..+.+.+|++.|.-+|.-++..+.+
T Consensus 521 I~ell~d~ds~lRy~G~fs~alAy~GTg------n~~vv~~lLh~avsD~nDDVrRAAViAlGfvc~~D~~--------- 585 (926)
T COG5116 521 INELLYDKDSILRYNGVFSLALAYVGTG------NLGVVSTLLHYAVSDGNDDVRRAAVIALGFVCCDDRD--------- 585 (926)
T ss_pred HHHHhcCchHHhhhccHHHHHHHHhcCC------cchhHhhhheeecccCchHHHHHHHHheeeeEecCcc---------
Confidence 3344555666666655554432211111 12345555554 4677889999999999888765443
Q ss_pred ccccccchhHHhhhHHHHHHHHHHHHHHhhhchHHHHHHHH-hhcchhHHHHHHHHHHhccCCCCCceeeecCCCHHHHH
Q 005044 417 VQKLQDGEFIVQATKDCVAKTLKRLEEKIHGRVLNHLLYLM-RVAEKGVQRRVALALAHLCSPDDQRTIFIDGGGLELLL 495 (717)
Q Consensus 417 i~~L~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~L~~ll-~~~~~~v~~~a~~aL~~l~~~~~~~~~~~~~~~l~~L~ 495 (717)
.++..+.+| .+.++.||...+.+|+..+.+...+ -++..|-
T Consensus 586 --------------------------------~lv~tvelLs~shN~hVR~g~AvaLGiacag~G~~------~a~diL~ 627 (926)
T COG5116 586 --------------------------------LLVGTVELLSESHNFHVRAGVAVALGIACAGTGDK------VATDILE 627 (926)
T ss_pred --------------------------------hhhHHHHHhhhccchhhhhhhHHHhhhhhcCCccH------HHHHHHH
Confidence 344455555 4568999999999999998775432 3577888
Q ss_pred HHhcCCCchhhhhhHHHHHHhhh
Q 005044 496 GLLGSTNPKQQLDGAVALFKLAN 518 (717)
Q Consensus 496 ~ll~~~~~~v~~~a~~~l~~L~~ 518 (717)
.|..+.+.-||+.|..++..+.-
T Consensus 628 ~L~~D~~dfVRQ~AmIa~~mIl~ 650 (926)
T COG5116 628 ALMYDTNDFVRQSAMIAVGMILM 650 (926)
T ss_pred HHhhCcHHHHHHHHHHHHHHHHh
Confidence 89999999999999988887764
No 250
>KOG1820 consensus Microtubule-associated protein [Cytoskeleton]
Probab=91.26 E-value=8.1 Score=43.84 Aligned_cols=186 Identities=12% Similarity=0.077 Sum_probs=124.9
Q ss_pred cHHHHHhhcCCCHHHHHHHHHHHHHhhccChhhHHHHHhcCCHHHHHHH-HcCCCHHHHHHHHHHHHHhhcCChHHHHHH
Q 005044 209 IPPLVELLEFTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILM-LRSEDSAIHYEAVGVIGNLVHSSPNIKKEV 287 (717)
Q Consensus 209 i~~L~~ll~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~g~i~~L~~l-l~~~~~~v~~~a~~~L~~l~~~~~~~~~~~ 287 (717)
.+.+..-+.++++.-|..|+..+........ ........|.+-.+++. +.+.+..+...++.+|..++...... ..-
T Consensus 255 ~~~l~t~~~s~~WK~R~Eale~l~~~l~e~~-~~~~~~~~~ll~~~~ki~~kDaN~~v~~~aa~~l~~ia~~lr~~-~~~ 332 (815)
T KOG1820|consen 255 TKNLETEMLSKKWKDRKEALEELVAILEEAK-KEIVKGYTGLLGILLKIRLKDANINVVMLAAQILELIAKKLRPL-FRK 332 (815)
T ss_pred ChHHHHhhhccchHHHHHHHHHHHHHHhccc-cccccCcchHHHHHHHHhccCcchhHHHHHHHHHHHHHHhcchh-hHH
Confidence 3444455567889999999999988886222 11111122334444443 34668888999999999997654433 222
Q ss_pred HHcCChHHHHHhhccCChHHHHHHHHHHHHHhcCChhhHHHHHhcCChHHHHHHhcCCCHHHHHHHHHHHHHhhcCCCC-
Q 005044 288 LAAGALQPVIGLLSSCCSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQSPDVQLREMSAFALGRLAQDMHN- 366 (717)
Q Consensus 288 ~~~g~l~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~l~~~~~l~~L~~~l~~~~~~v~~~a~~~L~~l~~~~~~- 366 (717)
...+..+.++..+.+....++..+..++..++... .-....+.++..+++.++.++..+...+.......+.
T Consensus 333 ~~~~v~p~lld~lkekk~~l~d~l~~~~d~~~ns~-------~l~~~~~~I~e~lk~knp~~k~~~~~~l~r~~~~~~~~ 405 (815)
T KOG1820|consen 333 YAKNVFPSLLDRLKEKKSELRDALLKALDAILNST-------PLSKMSEAILEALKGKNPQIKGECLLLLDRKLRKLGPK 405 (815)
T ss_pred HHHhhcchHHHHhhhccHHHHHHHHHHHHHHHhcc-------cHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHhhcCCc
Confidence 33567888999998888888887777776665311 1133578899999999999999877777776653332
Q ss_pred -chhhHhcCChHHHHHhhcCCChhHHHHHHHHHHhccC
Q 005044 367 -QAGIAHNGGLVPLLKLLDSKNGSLQHNAAFALYGLAD 403 (717)
Q Consensus 367 -~~~l~~~~~l~~L~~ll~~~~~~v~~~a~~~L~~l~~ 403 (717)
...-.-.+.++.++....+.+.+||..+..++..+..
T Consensus 406 ~~~~~t~~~l~p~~~~~~~D~~~~VR~Aa~e~~~~v~k 443 (815)
T KOG1820|consen 406 TVEKETVKTLVPHLIKHINDTDKDVRKAALEAVAAVMK 443 (815)
T ss_pred CcchhhHHHHhHHHhhhccCCcHHHHHHHHHHHHHHHH
Confidence 2222233456667777888999999999998887653
No 251
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=91.22 E-value=11 Score=42.43 Aligned_cols=176 Identities=15% Similarity=0.197 Sum_probs=104.2
Q ss_pred HHHHHhhcCchhhhHHHhcCCcHHHHHhhcC-CCHHHHHHHHHHHHHhhccChhhHHHHHhcCCH--HHHHHHHcCCCH-
Q 005044 188 AITNLAHENSSIKTRVRMEGGIPPLVELLEF-TDTKVQRAAAGALRTLAFKNDENKNQIVECNAL--PTLILMLRSEDS- 263 (717)
Q Consensus 188 ~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~-~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~g~i--~~L~~ll~~~~~- 263 (717)
+|++....++.....+.+.+++..+...++. ...+++..++..+.+++.. .+.........-+ ..+-.++...+.
T Consensus 494 ~l~~~t~~~~~~C~~~l~~~g~~~~~~~l~~f~~~~~~~~il~~l~n~~~~-~~~~~~~~~~~~~~~~~f~~~~~~w~~~ 572 (699)
T KOG3665|consen 494 ALWNITDENPETCKEFLDNGGMKLLFKCLESFDNEELHRKILGLLGNLAEV-LELRELLMIFEFIDFSVFKVLLNKWDSI 572 (699)
T ss_pred HHHhhhcCCHHHHHHHHhcccHHHHHHHHhhccchhHHHHHHHHHHHHHHH-hhhhhhhhHHHHHHHHHHHHHHhhcchh
Confidence 5667788888888999999999999999975 5678999999999999973 3222222111111 233344444444
Q ss_pred HHHHHHHHHHHHhhcCChHHHHHHHHcCChHHHHHhhccCChHHHHHHHHHHHHHhcCChhhHHHHHhcCChHH-HHHHh
Q 005044 264 AIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLSSCCSESQREAALLLGQFAATDSDCKVHIVQRGAVRP-LIEML 342 (717)
Q Consensus 264 ~v~~~a~~~L~~l~~~~~~~~~~~~~~g~l~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~l~~~~~l~~-L~~~l 342 (717)
+....++..|..+....+.. ...+ -+..+...+......-............+.. +..++
T Consensus 573 ersY~~~siLa~ll~~~~~~----~~~~---------------~r~~~~~~l~e~i~~~~~~~~~~~~~~~f~~~~~~il 633 (699)
T KOG3665|consen 573 ERSYNAASILALLLSDSEKT----TECV---------------FRNSVNELLVEAISRWLTSEIRVINDRSFFPRILRIL 633 (699)
T ss_pred hHHHHHHHHHHHHHhCCCcC----cccc---------------chHHHHHHHHHHhhccCccceeehhhhhcchhHHHHh
Confidence 78888888888887654321 1111 1111122222111111111111111222223 55555
Q ss_pred cC-CCHHHHHHHHHHHHHhhc-CCCCchhhHhcCChHHHHHhh
Q 005044 343 QS-PDVQLREMSAFALGRLAQ-DMHNQAGIAHNGGLVPLLKLL 383 (717)
Q Consensus 343 ~~-~~~~v~~~a~~~L~~l~~-~~~~~~~l~~~~~l~~L~~ll 383 (717)
.. ..+..+.+|+|++.+++. ++++...+.+.++++.+.+.-
T Consensus 634 ~~s~~~g~~lWal~ti~~~~~~~~~~~~~~~~~~~~~~~~~~~ 676 (699)
T KOG3665|consen 634 RLSKSDGSQLWALWTIKNVLEQNKEYCKLVRESNGFELIENIR 676 (699)
T ss_pred cccCCCchHHHHHHHHHHHHHcChhhhhhhHhccchhhhhhcc
Confidence 44 566788899999999997 445566677778777765543
No 252
>KOG1820 consensus Microtubule-associated protein [Cytoskeleton]
Probab=91.16 E-value=3.4 Score=46.72 Aligned_cols=187 Identities=12% Similarity=0.050 Sum_probs=123.6
Q ss_pred ChHHHHHhhccCChHHHHHHHHHHHHHhcCChhhHHHHHhcCChHHHHHHh-cCCCHHHHHHHHHHHHHhhcCCCCchhh
Q 005044 292 ALQPVIGLLSSCCSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEML-QSPDVQLREMSAFALGRLAQDMHNQAGI 370 (717)
Q Consensus 292 ~l~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~l~~~~~l~~L~~~l-~~~~~~v~~~a~~~L~~l~~~~~~~~~l 370 (717)
+-+.+..-+.+..+.-|.+|+..+........ ........+.+..++... .+.+-.+...++..|..++..-.....=
T Consensus 254 i~~~l~t~~~s~~WK~R~Eale~l~~~l~e~~-~~~~~~~~~ll~~~~ki~~kDaN~~v~~~aa~~l~~ia~~lr~~~~~ 332 (815)
T KOG1820|consen 254 ITKNLETEMLSKKWKDRKEALEELVAILEEAK-KEIVKGYTGLLGILLKIRLKDANINVVMLAAQILELIAKKLRPLFRK 332 (815)
T ss_pred cChHHHHhhhccchHHHHHHHHHHHHHHhccc-cccccCcchHHHHHHHHhccCcchhHHHHHHHHHHHHHHhcchhhHH
Confidence 44555566677889999999988887764332 111111123333333333 3457777888888888888744333333
Q ss_pred HhcCChHHHHHhhcCCChhHHHHHHHHHHhccCCCcchHHHHHhcCccccccchhHHhhhHHHHHHHHHHHHHHhhhchH
Q 005044 371 AHNGGLVPLLKLLDSKNGSLQHNAAFALYGLADNEDNVADFIRVGGVQKLQDGEFIVQATKDCVAKTLKRLEEKIHGRVL 450 (717)
Q Consensus 371 ~~~~~l~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~l~~~~~i~~L~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 450 (717)
...+..+.++..+......++..+..++-.++.... -..+.
T Consensus 333 ~~~~v~p~lld~lkekk~~l~d~l~~~~d~~~ns~~---------------------------------------l~~~~ 373 (815)
T KOG1820|consen 333 YAKNVFPSLLDRLKEKKSELRDALLKALDAILNSTP---------------------------------------LSKMS 373 (815)
T ss_pred HHHhhcchHHHHhhhccHHHHHHHHHHHHHHHhccc---------------------------------------HHHHH
Confidence 344567778888888888888877777766654111 11256
Q ss_pred HHHHHHHhhcchhHHHHHHHHHHhccCCCC--CceeeecCCCHHHHHHHhcCCCchhhhhhHHHHHHhhh
Q 005044 451 NHLLYLMRVAEKGVQRRVALALAHLCSPDD--QRTIFIDGGGLELLLGLLGSTNPKQQLDGAVALFKLAN 518 (717)
Q Consensus 451 ~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~--~~~~~~~~~~l~~L~~ll~~~~~~v~~~a~~~l~~L~~ 518 (717)
+.+...++..+|.++..+...+.......+ ....-.-.+.+|.++....+.+.+||..|..++..+.+
T Consensus 374 ~~I~e~lk~knp~~k~~~~~~l~r~~~~~~~~~~~~~t~~~l~p~~~~~~~D~~~~VR~Aa~e~~~~v~k 443 (815)
T KOG1820|consen 374 EAILEALKGKNPQIKGECLLLLDRKLRKLGPKTVEKETVKTLVPHLIKHINDTDKDVRKAALEAVAAVMK 443 (815)
T ss_pred HHHHHHhcCCChhhHHHHHHHHHHHHhhcCCcCcchhhHHHHhHHHhhhccCCcHHHHHHHHHHHHHHHH
Confidence 668888999999999998888887754433 22112234578889999999999999999988876654
No 253
>KOG2032 consensus Uncharacterized conserved protein [Function unknown]
Probab=90.97 E-value=1.6 Score=45.01 Aligned_cols=142 Identities=15% Similarity=0.158 Sum_probs=85.6
Q ss_pred hcCCCHHHHHHHHHHHHHhhccChhhHHHHHhcCCHHHHHH-HHcCCCHHHHHHHHHHHHHhhcCChHHHHHHHHcC---
Q 005044 216 LEFTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLIL-MLRSEDSAIHYEAVGVIGNLVHSSPNIKKEVLAAG--- 291 (717)
Q Consensus 216 l~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~g~i~~L~~-ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g--- 291 (717)
..+++..++..|+..|.+.++.-|+........ .+..++. +..+.+.+|..++..+|..+...-.. .-+..+
T Consensus 267 a~dp~a~~r~~a~r~L~~~as~~P~kv~th~~~-~ldaii~gL~D~~~~~V~leam~~Lt~v~~~~~~---~~l~~~~l~ 342 (533)
T KOG2032|consen 267 ATDPSAKSRGMACRGLGNTASGAPDKVRTHKTT-QLDAIIRGLYDDLNEEVQLEAMKCLTMVLEKASN---DDLESYLLN 342 (533)
T ss_pred ccCchhHHHHHHHHHHHHHhccCcHHHHHhHHH-HHHHHHHHHhcCCccHHHHHHHHHHHHHHHhhhh---cchhhhchh
Confidence 356788999999999999998655544444333 3444554 44455789999999999887532111 112222
Q ss_pred ChHHHHHhhccCChHHHHHHHHHHHHHhcCCh-hhHHHHHh--cCChHHHHHHhcCCCHHHHHHHHHHHHHhhc
Q 005044 292 ALQPVIGLLSSCCSESQREAALLLGQFAATDS-DCKVHIVQ--RGAVRPLIEMLQSPDVQLREMSAFALGRLAQ 362 (717)
Q Consensus 292 ~l~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~-~~~~~l~~--~~~l~~L~~~l~~~~~~v~~~a~~~L~~l~~ 362 (717)
+...+..++.+.+++.|..+...++.++.... ..+..+.+ .+....++-.+++++|.+-. ||......|.
T Consensus 343 ialrlR~l~~se~~~~R~aa~~Lfg~L~~l~g~~~e~~Fte~v~k~~~~lllhl~d~~p~va~-ACr~~~~~c~ 415 (533)
T KOG2032|consen 343 IALRLRTLFDSEDDKMRAAAFVLFGALAKLAGGGWEEFFTEQVKKRLAPLLLHLQDPNPYVAR-ACRSELRTCY 415 (533)
T ss_pred HHHHHHHHHHhcChhhhhhHHHHHHHHHHHcCCCchhhhHHHHHhccccceeeeCCCChHHHH-HHHHHHHhcC
Confidence 23445667788889999998887777763221 22222221 22333455556777877654 4444444443
No 254
>KOG2137 consensus Protein kinase [Signal transduction mechanisms]
Probab=90.93 E-value=7.7 Score=42.34 Aligned_cols=135 Identities=13% Similarity=0.061 Sum_probs=92.8
Q ss_pred hcCCHHHHHHHHcCCCHHHHHHHHHHHHHhhcCChHHHHHHHHcCChHHHHHhh-ccCChHHHHHHHHHHHHHhcCChhh
Q 005044 247 ECNALPTLILMLRSEDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLL-SSCCSESQREAALLLGQFAATDSDC 325 (717)
Q Consensus 247 ~~g~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~l~~L~~ll-~~~~~~~~~~a~~~L~~l~~~~~~~ 325 (717)
...++|.|...+++.+..++..++..+..++..-+ -..+...++|.+..+. ...+..++..++.++..+. +.
T Consensus 387 ~~~IlplL~~S~~~~~~~iQ~~~L~~lptv~e~iD---~~~vk~~ilP~l~~l~~~tt~~~vkvn~L~c~~~l~----q~ 459 (700)
T KOG2137|consen 387 KEKILPLLYRSLEDSDVQIQELALQILPTVAESID---VPFVKQAILPRLKNLAFKTTNLYVKVNVLPCLAGLI----QR 459 (700)
T ss_pred HHHHHHHHHHHhcCcchhhHHHHHHhhhHHHHhcc---HHHHHHHHHHHhhcchhcccchHHHHHHHHHHHHHH----HH
Confidence 44578899999999999999999999999875433 3445566788887774 3456788888888888886 12
Q ss_pred HHHHHhcCChHHHHHHhcCCCHHHHHHHHHHHHHhhcCCCCchhhHhcCChHHHHHhhcCCCh
Q 005044 326 KVHIVQRGAVRPLIEMLQSPDVQLREMSAFALGRLAQDMHNQAGIAHNGGLVPLLKLLDSKNG 388 (717)
Q Consensus 326 ~~~l~~~~~l~~L~~~l~~~~~~v~~~a~~~L~~l~~~~~~~~~l~~~~~l~~L~~ll~~~~~ 388 (717)
.....-...+..+....+..++.+....+.+..++......+..+.....++.++.+...+.-
T Consensus 460 lD~~~v~d~~lpi~~~~~~~dp~iv~~~~~i~~~l~~~~~~g~ev~~~~VlPlli~ls~~~~L 522 (700)
T KOG2137|consen 460 LDKAAVLDELLPILKCIKTRDPAIVMGFLRIYEALALIIYSGVEVMAENVLPLLIPLSVAPSL 522 (700)
T ss_pred HHHHHhHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHhhcccceeeehhhhhhhhhhhhhcccc
Confidence 111111223445555556789999888888888887655554555566667776666654443
No 255
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=90.89 E-value=8.6 Score=43.30 Aligned_cols=180 Identities=16% Similarity=0.171 Sum_probs=111.1
Q ss_pred HHHHHhcCChhhHHHHHhcCChHHHHHHhcC-CCHHHHHHHHHHHHHhhcCCCCchhhHhcCChH--HHHHhhcCC-Chh
Q 005044 314 LLGQFAATDSDCKVHIVQRGAVRPLIEMLQS-PDVQLREMSAFALGRLAQDMHNQAGIAHNGGLV--PLLKLLDSK-NGS 389 (717)
Q Consensus 314 ~L~~l~~~~~~~~~~l~~~~~l~~L~~~l~~-~~~~v~~~a~~~L~~l~~~~~~~~~l~~~~~l~--~L~~ll~~~-~~~ 389 (717)
+++++....++....+.+.+++..+...++. ....++..+...+.|++...+....+.....+. .+..++..- +.+
T Consensus 494 ~l~~~t~~~~~~C~~~l~~~g~~~~~~~l~~f~~~~~~~~il~~l~n~~~~~~~~~~~~~~~~~~~~~f~~~~~~w~~~e 573 (699)
T KOG3665|consen 494 ALWNITDENPETCKEFLDNGGMKLLFKCLESFDNEELHRKILGLLGNLAEVLELRELLMIFEFIDFSVFKVLLNKWDSIE 573 (699)
T ss_pred HHHhhhcCCHHHHHHHHhcccHHHHHHHHhhccchhHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHhhcchhh
Confidence 7888888889999999999999999999986 567788899999999997655443333222222 333344443 447
Q ss_pred HHHHHHHHHHhccCCCcchHHHHHhcCccccccchhHHhhhHHHHHH----HHHHHHH----HhhhchHHH-HHHHHhhc
Q 005044 390 LQHNAAFALYGLADNEDNVADFIRVGGVQKLQDGEFIVQATKDCVAK----TLKRLEE----KIHGRVLNH-LLYLMRVA 460 (717)
Q Consensus 390 v~~~a~~~L~~l~~~~~~~~~l~~~~~i~~L~~~~~~~~~~~~~~~~----~~~~l~~----~~~~~~~~~-L~~ll~~~ 460 (717)
....++.+|..+..+.+.. .+. ..+.|+.. ....+.. ......+.. +..++..+
T Consensus 574 rsY~~~siLa~ll~~~~~~---~~~--------------~~r~~~~~~l~e~i~~~~~~~~~~~~~~~f~~~~~~il~~s 636 (699)
T KOG3665|consen 574 RSYNAASILALLLSDSEKT---TEC--------------VFRNSVNELLVEAISRWLTSEIRVINDRSFFPRILRILRLS 636 (699)
T ss_pred HHHHHHHHHHHHHhCCCcC---ccc--------------cchHHHHHHHHHHhhccCccceeehhhhhcchhHHHHhccc
Confidence 8888999999886543220 000 00111111 1111100 011112222 45555544
Q ss_pred -chhHHHHHHHHHHhccCC-CCCceeeecCCCHHHHHHHhcCC-CchhhhhhH
Q 005044 461 -EKGVQRRVALALAHLCSP-DDQRTIFIDGGGLELLLGLLGST-NPKQQLDGA 510 (717)
Q Consensus 461 -~~~v~~~a~~aL~~l~~~-~~~~~~~~~~~~l~~L~~ll~~~-~~~v~~~a~ 510 (717)
.+..+..|++++.++... ++.++.+.+.++++.+..+-... ...++..+.
T Consensus 637 ~~~g~~lWal~ti~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 689 (699)
T KOG3665|consen 637 KSDGSQLWALWTIKNVLEQNKEYCKLVRESNGFELIENIRVLSEVVDVKEEAV 689 (699)
T ss_pred CCCchHHHHHHHHHHHHHcChhhhhhhHhccchhhhhhcchhHHHHHHHHHHH
Confidence 678899999999999765 44777777888888888765443 333444443
No 256
>PF06371 Drf_GBD: Diaphanous GTPase-binding Domain; InterPro: IPR010473 Diaphanous-related formins (Drfs) are a family of formin homology (FH) proteins that act as effectors of Rho small GTPases during growth factor-induced cytoskeletal remodelling, stress fibre formation, and cell division []. Drf proteins are characterised by a variety of shared domains: an N-terminal GTPase-binding domain (GBD), formin-homology domains FH1, FH2 (IPR003104 from INTERPRO) and FH3 (IPR010472 from INTERPRO), and a C-terminal conserved Dia-autoregulatory domain (DAD) that binds the GBD. This entry represents the GBD, which is a bifunctional autoinhibitory domain that interacts with and is regulated by activated Rho family members. Mammalian Drf3 contains a CRIB-like motif within its GBD for binding to Cdc42, which is required for Cdc42 to activate and guide Drf3 towards the cell cortex where it remodels the actin skeleton [].; GO: 0003779 actin binding, 0017048 Rho GTPase binding, 0030036 actin cytoskeleton organization; PDB: 3OBV_A 2BNX_A 3EG5_D 2BAP_B 3O4X_B 1Z2C_B 2F31_A.
Probab=90.69 E-value=1.2 Score=41.10 Aligned_cols=91 Identities=13% Similarity=0.153 Sum_probs=64.5
Q ss_pred CChhhHHHHHhCCChHHHHHHHhccccCCCc-cchhHHHHHHHHHHHHHhhcCchhhhHHHhcCCcHHHHHhhcCCCHHH
Q 005044 145 VKPEHQQLIVDNGALSHLVNLLKRHMDSNCS-RAVNSVIRRAADAITNLAHENSSIKTRVRMEGGIPPLVELLEFTDTKV 223 (717)
Q Consensus 145 ~~~~~~~~~~~~~~i~~L~~lL~~~~~~~~~-~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v 223 (717)
.....-..+++.||+..|+.+|......... .........++.+|..+..........+...+++..|+..+.+++..+
T Consensus 95 ~~~~Wv~~Fl~~~G~~~L~~~L~~~~~~~~~~~~~~~~~~~~l~Clkal~n~~~G~~~v~~~~~~v~~i~~~L~s~~~~~ 174 (187)
T PF06371_consen 95 NPISWVQEFLELGGLEALLNVLSKLNKKKEKSEEDIDIEHECLRCLKALMNTKYGLEAVLSHPDSVNLIALSLDSPNIKT 174 (187)
T ss_dssp S-HHHHHHH-HHHHHHHHHHHHHHHHTHHCTCTTCHHHHHHHHHHHHHHTSSHHHHHHHHCSSSHHHHHHHT--TTSHHH
T ss_pred CCchHHHHhccCCCHHHHHHHHHHhhhhhhhcchhHHHHHHHHHHHHHHHccHHHHHHHHcCcHHHHHHHHHHCCCCHHH
Confidence 3445566777889999999998764321111 122267788999999988755555555555788999999999999999
Q ss_pred HHHHHHHHHHhh
Q 005044 224 QRAAAGALRTLA 235 (717)
Q Consensus 224 ~~~a~~~L~~L~ 235 (717)
+..++..|..+|
T Consensus 175 r~~~leiL~~lc 186 (187)
T PF06371_consen 175 RKLALEILAALC 186 (187)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 999999999887
No 257
>PF08506 Cse1: Cse1; InterPro: IPR013713 The exchange of macromolecules between the nucleus and cytoplasm takes place through nuclear pore complexes within the nuclear membrane. Active transport of large molecules through these pore complexes require carrier proteins, called karyopherins (importins and exportins), which shuttle between the two compartments. This domain is found in exportin Cse1 (also known as importin-alpha re-exporter). Exportin Cse1 mediates nuclear transport of importin-alpha back into the cytosol, where importin-alpha functions as a transporter of proteins carrying nuclear localisation signals (NLS) from the cytoplasm into the nucleus [, , ]. This domain contains HEAT repeats. More information about these proteins can be found at Protein of the Month: Importins [].; GO: 0006886 intracellular protein transport; PDB: 1Z3H_B 1WA5_C.
Probab=90.15 E-value=24 Score=36.39 Aligned_cols=240 Identities=17% Similarity=0.151 Sum_probs=119.5
Q ss_pred hHHHhHHHHHHHHhc--CChhhHHHHHhCCChHHHHHHHhccccCCCccchhHHHHHHHHHHHHHhhcCchhhhHHHhcC
Q 005044 130 HEVEKGSAFALGLLA--VKPEHQQLIVDNGALSHLVNLLKRHMDSNCSRAVNSVIRRAADAITNLAHENSSIKTRVRMEG 207 (717)
Q Consensus 130 ~~v~~~a~~~L~~l~--~~~~~~~~~~~~~~i~~L~~lL~~~~~~~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~ 207 (717)
+.++..++..+...+ ..++... .+ ...+..+.++|..-...... ..+...++..|..++. .+..+..+...+
T Consensus 110 ~kvK~~i~~~~~ly~~kY~e~f~~-~l-~~fv~~vw~lL~~~~~~~~~---D~lv~~al~FL~~v~~-~~~~~~lf~~~~ 183 (370)
T PF08506_consen 110 EKVKAWICENLNLYAEKYEEEFEP-FL-PTFVQAVWNLLTKISQQPKY---DILVSKALQFLSSVAE-SPHHKNLFENKP 183 (370)
T ss_dssp HHHHHHHHHHHHHHHHH-HHHHHH-HH-HHHHHHHHHHHTC--SSGGG---HHHHHHHHHHHHHHHT-SHHHHTTT-SHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH-HH-HHHHHHHHHHHHHhhhcccc---cHHHHHHHHHHHHHHc-chhHHHHhCCHH
Confidence 367777777776666 2222221 11 13445555556443332221 1455556666665544 222221111111
Q ss_pred CcHHHHHhhcCCCHHHHHHHHHHHHHhhccChhhHHHHHhcCCHHHHHHHHcCCC-HHHHHHHHHHHHHhhcCChHHHHH
Q 005044 208 GIPPLVELLEFTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSED-SAIHYEAVGVIGNLVHSSPNIKKE 286 (717)
Q Consensus 208 ~i~~L~~ll~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~g~i~~L~~ll~~~~-~~v~~~a~~~L~~l~~~~~~~~~~ 286 (717)
.+..+++- -++-+++. +++. ..+-+..-.+.+-+-+...+ ..-|..|+..|..++.........
T Consensus 184 ~L~~Iie~-------------VI~Pnl~~-~e~D-~ElfEddP~EYIrrd~e~sd~~TrR~AA~dfl~~L~~~~~~~v~~ 248 (370)
T PF08506_consen 184 HLQQIIEK-------------VIFPNLCL-REED-EELFEDDPEEYIRRDLEGSDSDTRRRAACDFLRSLCKKFEKQVTS 248 (370)
T ss_dssp HHHHHHHH-------------THHHHHS---HHH-HHHHHHSHHHHHHHHSCSS---SHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHH-------------hccCccCC-CHHH-HHHHccCHHHHHHhhccccccCCcHHHHHHHHHHHHHHHhHHHHH
Confidence 11111110 23445554 3332 23333334455555555433 355788888999987543222111
Q ss_pred HHHcCChHHHHHhhc------cCChHHHHHHHHHHHHHhcCChh------------hHHHHHhcCChHHHHHHhcCCCHH
Q 005044 287 VLAAGALQPVIGLLS------SCCSESQREAALLLGQFAATDSD------------CKVHIVQRGAVRPLIEMLQSPDVQ 348 (717)
Q Consensus 287 ~~~~g~l~~L~~ll~------~~~~~~~~~a~~~L~~l~~~~~~------------~~~~l~~~~~l~~L~~~l~~~~~~ 348 (717)
++ ...+..++. +.++..+..|+..++.++..... ....+....++|.|. --.+..|-
T Consensus 249 i~----~~~i~~~l~~y~~~~~~~w~~KD~Al~Li~ala~k~~t~~~Gvt~~~~~v~v~~Ff~~~v~peL~-~~~~~~pi 323 (370)
T PF08506_consen 249 IL----MQYIQQLLQQYASNPSNNWRSKDGALYLIGALASKGSTTKSGVTQTNELVDVVDFFSQHVLPELQ-PDVNSHPI 323 (370)
T ss_dssp HH----HHHHHHHHHHHHH-TTT-HHHHHHHHHHHHHHHBSS--BTTB-S-B-TTS-HHHHHHHHTCHHHH--SS-S-HH
T ss_pred HH----HHHHHHHHHHHhhCCcccHHHHHHHHHHHHHHHhhhccccCCcccccccccHHHHHHHHhHHHhc-ccCCCCcc
Confidence 11 122333333 24577788888899999854421 123344555666665 22235677
Q ss_pred HHHHHHHHHHHhhcCCCCchhhHhcCChHHHHHhhcCCChhHHHHHHHHH
Q 005044 349 LREMSAFALGRLAQDMHNQAGIAHNGGLVPLLKLLDSKNGSLQHNAAFAL 398 (717)
Q Consensus 349 v~~~a~~~L~~l~~~~~~~~~l~~~~~l~~L~~ll~~~~~~v~~~a~~~L 398 (717)
++..|++.+..+-..-+ .. .-.+.++.+++.|.+++..|...|+.++
T Consensus 324 Lka~aik~~~~Fr~~l~-~~--~l~~~~~~l~~~L~~~~~vv~tyAA~~i 370 (370)
T PF08506_consen 324 LKADAIKFLYTFRNQLP-KE--QLLQIFPLLVNHLQSSSYVVHTYAAIAI 370 (370)
T ss_dssp HHHHHHHHHHHHGGGS--HH--HHHHHHHHHHHHTTSS-HHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHhhCC-HH--HHHHHHHHHHHHhCCCCcchhhhhhhhC
Confidence 88888888887765321 12 2234788899999999999998888765
No 258
>PF10363 DUF2435: Protein of unknown function (DUF2435)
Probab=89.67 E-value=1.3 Score=35.06 Aligned_cols=71 Identities=20% Similarity=0.157 Sum_probs=55.5
Q ss_pred HHHHHhhcCCCHHHHHHHHHHHHHhhccChhhHHHHHhcCCHHHHHHHHcCCCHHHHHHHHHHHHHhhcCChH
Q 005044 210 PPLVELLEFTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSEDSAIHYEAVGVIGNLVHSSPN 282 (717)
Q Consensus 210 ~~L~~ll~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~ 282 (717)
...+..+.++.+.+|..++..|+.|..... ....-..+++..+...++++++-|-..|+..|..++...+.
T Consensus 6 ~~al~~L~dp~~PvRa~gL~~L~~Li~~~~--~~~~~~~~il~l~l~~L~d~DsyVYL~aI~~L~~La~~~p~ 76 (92)
T PF10363_consen 6 QEALSDLNDPLPPVRAHGLVLLRKLIESKS--EPVIDIPKILDLFLSQLKDEDSYVYLNAIKGLAALADRHPD 76 (92)
T ss_pred HHHHHHccCCCcchHHHHHHHHHHHHHcCC--cchhhHHHHHHHHHHHcCCCCchHHHHHHHHHHHHHHHChH
Confidence 345666778889999999999999997544 12222345778888999999999999999999999866553
No 259
>PF12530 DUF3730: Protein of unknown function (DUF3730) ; InterPro: IPR022542 This domain is found in eukaryotes, and is typically between 220 and 262 amino acids in length.
Probab=89.47 E-value=20 Score=34.28 Aligned_cols=124 Identities=21% Similarity=0.121 Sum_probs=78.0
Q ss_pred hHHHhHHHHHHHHhcCCh-hhHHHHHhCCChHHHHHHHhccccCCCccchhHHHHHHHHHHHHHhhcCchhhhHHHhcCC
Q 005044 130 HEVEKGSAFALGLLAVKP-EHQQLIVDNGALSHLVNLLKRHMDSNCSRAVNSVIRRAADAITNLAHENSSIKTRVRMEGG 208 (717)
Q Consensus 130 ~~v~~~a~~~L~~l~~~~-~~~~~~~~~~~i~~L~~lL~~~~~~~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~ 208 (717)
|+++...+.+|..++... .+... ++..+..+.+.... +....+.+.+..+...++..- +.
T Consensus 15 ~~~~~~~L~~L~~l~~~~~~~~~~-----v~~~L~~L~~~~~~--------~~~~~~~rLl~~lw~~~~r~f------~~ 75 (234)
T PF12530_consen 15 PELQLPLLEALPSLACHKNVCVPP-----VLQTLVSLVEQGSL--------ELRYVALRLLTLLWKANDRHF------PF 75 (234)
T ss_pred hHHHHHHHHHHHHHhccCccchhH-----HHHHHHHHHcCCch--------hHHHHHHHHHHHHHHhCchHH------HH
Confidence 489999999999999444 33222 23445555544433 444566777777776554322 22
Q ss_pred cHHHHHh--------h--cCCCHHHHHHHHHHHHHhhccChhhHHHHHhcCCHHHHHHHH-cCCCHHHHHHHHHHHHHhh
Q 005044 209 IPPLVEL--------L--EFTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILML-RSEDSAIHYEAVGVIGNLV 277 (717)
Q Consensus 209 i~~L~~l--------l--~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~g~i~~L~~ll-~~~~~~v~~~a~~~L~~l~ 277 (717)
+..++.. . .+...+........+..+|...++... ..++.+..++ ++.++.++..++.+|..++
T Consensus 76 L~~~L~~~~~r~~~~~~~~~~~~~~~i~~a~s~~~ic~~~p~~g~-----~ll~~ls~~L~~~~~~~~~alale~l~~Lc 150 (234)
T PF12530_consen 76 LQPLLLLLILRIPSSFSSKDEFWECLISIAASIRDICCSRPDHGV-----DLLPLLSGCLNQSCDEVAQALALEALAPLC 150 (234)
T ss_pred HHHHHHHHHhhcccccCCCcchHHHHHHHHHHHHHHHHhChhhHH-----HHHHHHHHHHhccccHHHHHHHHHHHHHHH
Confidence 3333332 0 122355666667788888876666322 3467788888 7888889999999999997
No 260
>KOG1566 consensus Conserved protein Mo25 [Function unknown]
Probab=89.25 E-value=23 Score=34.66 Aligned_cols=203 Identities=14% Similarity=0.150 Sum_probs=138.1
Q ss_pred HHHhCCChHHHHHHHhccccCCCccchhHHHHHHHHHHHHHhhcCchhhhHHHh-----cCCcHHHHHhhcCCCHHHHHH
Q 005044 152 LIVDNGALSHLVNLLKRHMDSNCSRAVNSVIRRAADAITNLAHENSSIKTRVRM-----EGGIPPLVELLEFTDTKVQRA 226 (717)
Q Consensus 152 ~~~~~~~i~~L~~lL~~~~~~~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~-----~~~i~~L~~ll~~~~~~v~~~ 226 (717)
.+...|.+..++..+..-.- +.+..++.+..++-...-..+...++ ...+..|+..-. ..+++...
T Consensus 74 ef~~~~~l~~lI~~l~~l~f--------E~rkD~~~ifnnllr~qvgtr~~tv~Yl~t~~e~~~~lv~~~~-~~~~iaL~ 144 (342)
T KOG1566|consen 74 EFYNADVLSLLIQHLPKLEF--------ESRKDVLQIFNNLLRRQVGTRSPTVEYLETNPEILDNLVKGYE-NTPEIALT 144 (342)
T ss_pred HHHhCCchHHHHHhhhcccc--------hhhhHHHHHHHHHHHhhcCCcchHHHHHHhCHHHHHHHHhhhc-cchHHHHH
Confidence 44566778888888876554 66777787877777644433322221 122333333211 13566666
Q ss_pred HHHHHHHhhccChhhHHHHHhcCCHHHHHHHHcCCCHHHHHHHHHHHHHhhcCChHHHHHHHHcCC----hHHHHHhhcc
Q 005044 227 AAGALRTLAFKNDENKNQIVECNALPTLILMLRSEDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGA----LQPVIGLLSS 302 (717)
Q Consensus 227 a~~~L~~L~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~----l~~L~~ll~~ 302 (717)
+...|..... .+...+.+....-+......++.+.-++...|..+...+..........+..... .+..-.++.+
T Consensus 145 cg~mlrEcir-he~LakiiL~s~~~~~FF~~vq~p~FdiasdA~~tfK~llt~Hk~~vaEfl~~n~d~ff~e~~~~Ll~s 223 (342)
T KOG1566|consen 145 CGNMLRECIR-HEFLAKIILESTNFEKFFLYVQLPNFDIASDAFSTFKELLTRHKSVVAEFLIRNYDNFFAEVYEKLLRS 223 (342)
T ss_pred HHHHHHHHHh-hHHHHHHHHcchhHHHHHHHHhccchHHHHHHHHHHHHHHHHhHHHHHHHHHhChhhhHHHHHHHHhcc
Confidence 6556666654 4555666667777888888888888899999999999987766655555555443 4446778888
Q ss_pred CChHHHHHHHHHHHHHhcCChhh---HHHHHhcCChHHHHHHhcCCCHHHHHHHHHHHHHhhcCC
Q 005044 303 CCSESQREAALLLGQFAATDSDC---KVHIVQRGAVRPLIEMLQSPDVQLREMSAFALGRLAQDM 364 (717)
Q Consensus 303 ~~~~~~~~a~~~L~~l~~~~~~~---~~~l~~~~~l~~L~~~l~~~~~~v~~~a~~~L~~l~~~~ 364 (717)
.+.-+++.+..+++.+--+.+.. ...+....-+..++.+|+++...++.+|-...+-...++
T Consensus 224 ~Nyvtkrqs~kllg~llldr~N~~~M~kYiss~enLKlmM~llrdkskniQ~eAFhvFKvfvAnp 288 (342)
T KOG1566|consen 224 ENYVTKRQSLKLLGELLLDRSNSAVMTKYISSPENLKLMMNLLRDKSKNIQLEAFHVFKVFVANP 288 (342)
T ss_pred cceehHHHHHHhHHHHHhCCCcHHHHHHHhcCHHHHHHHHHHhhCccccchHHHHHHHHHHhcCC
Confidence 89889999999999886443322 233444567889999999999999999999888887654
No 261
>PF12231 Rif1_N: Rap1-interacting factor 1 N terminal; InterPro: IPR022031 This domain family is found in eukaryotes, and is typically between 135 and 146 amino acids in length. Rif1 is a protein which interacts with Rap1 to regulate telomere length. Interaction with telomeres limits their length. The N-terminal region contains many HEAT- and ARMADILLO- type repeats. These are helical folds which form extended curved proteins or RNA interface surfaces.
Probab=88.98 E-value=31 Score=35.77 Aligned_cols=224 Identities=14% Similarity=0.135 Sum_probs=115.5
Q ss_pred CccchHHHhHHHHHHHHhcCChhhHHHHHhCCC---hHHHHHHHhccccCCCccchhHHHHHHHHHHHHHhhcCchhhhH
Q 005044 126 KPFEHEVEKGSAFALGLLAVKPEHQQLIVDNGA---LSHLVNLLKRHMDSNCSRAVNSVIRRAADAITNLAHENSSIKTR 202 (717)
Q Consensus 126 ~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~---i~~L~~lL~~~~~~~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~ 202 (717)
.|++..+..+|+++|+.+..+++....+-+.-. +...+..+.+... ++ .+....+++|..=-. ...
T Consensus 56 ~p~~~~L~~qALkll~~~l~~~~i~~~l~~d~~~~~i~~~i~~l~~~~~---~K---~i~~~~l~~ls~Q~f-----~~~ 124 (372)
T PF12231_consen 56 DPFDSRLVIQALKLLGFFLYHPEIVSTLSDDFASFIIDHSIESLQNPNS---PK---SICTHYLWCLSDQKF-----SPK 124 (372)
T ss_pred CCcchHHHHHHHHHHHHHHccHHHHhhCChHHHHHHHHHHHHHHcCCCC---CH---HHHHHHHHHHHcCCC-----CCc
Confidence 445668999999999999988877655444332 3333444433322 22 566666666654222 222
Q ss_pred HHhcCCcHHHHHhhc-----CCCHHHHHHHHHHHHHhhccChhhHHHHHhcCCHHHHHHHHcCCCHHHHHHHHHHHHHhh
Q 005044 203 VRMEGGIPPLVELLE-----FTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSEDSAIHYEAVGVIGNLV 277 (717)
Q Consensus 203 ~~~~~~i~~L~~ll~-----~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~v~~~a~~~L~~l~ 277 (717)
+.....+..++..+. -++..+....+.++.++....+..-..-+. --++.++..+-+....++..|...+..+.
T Consensus 125 ~~~~~~~~~l~~~l~~i~~~~~s~si~~erL~i~~~ll~q~p~~M~~~~~-~W~~~l~~~l~~~~k~ir~~a~~l~~~~~ 203 (372)
T PF12231_consen 125 IMTSDRVERLLAALHNIKNRFPSKSIISERLNIYKRLLSQFPQQMIKHAD-IWFPILFPDLLSSAKDIRTKAISLLLEAK 203 (372)
T ss_pred ccchhhHHHHHHHHHHhhccCCchhHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHhhcchHHHHHHHHHHHHHH
Confidence 333344455555442 256778888999999998644443222221 14667777666777778777666665553
Q ss_pred cC---ChHHHHHH---HHcCC---------hHHHHHhhcc-CChHHHHHHHHHHHHHhcCChhhHHHHHhcCChHHHHHH
Q 005044 278 HS---SPNIKKEV---LAAGA---------LQPVIGLLSS-CCSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEM 341 (717)
Q Consensus 278 ~~---~~~~~~~~---~~~g~---------l~~L~~ll~~-~~~~~~~~a~~~L~~l~~~~~~~~~~l~~~~~l~~L~~~ 341 (717)
.. +....+.+ .+... .+.+..++.+ ++....-..-.++.-+. +++....--.-...+...-..
T Consensus 204 ~~l~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~L~~mi~~~~~~~~a~~iW~~~i~LL-~~~~~~~w~~~n~wL~v~e~c 282 (372)
T PF12231_consen 204 KCLGPNKELSKSVLEDLQRSLENGKLIQLYCERLKEMIKSKDEYKLAMQIWSVVILLL-GSSRLDSWEHLNEWLKVPEKC 282 (372)
T ss_pred HHhChhHHHHHHHHHHhccccccccHHHHHHHHHHHHHhCcCCcchHHHHHHHHHHHh-CCchhhccHhHhHHHHHHHHH
Confidence 21 11111111 11112 2235555555 22221111111222222 211110000011233333344
Q ss_pred hcCCCHHHHHHHHHHHHHhhc
Q 005044 342 LQSPDVQLREMSAFALGRLAQ 362 (717)
Q Consensus 342 l~~~~~~v~~~a~~~L~~l~~ 362 (717)
.+++++.+|..|..+-..+..
T Consensus 283 Fn~~d~~~k~~A~~aW~~liy 303 (372)
T PF12231_consen 283 FNSSDPQVKIQAFKAWRRLIY 303 (372)
T ss_pred hcCCCHHHHHHHHHHHHHHHH
Confidence 567899999998887777664
No 262
>PF11707 Npa1: Ribosome 60S biogenesis N-terminal; InterPro: IPR021714 Npa1p is required for ribosome biogenesis and operates in the same functional environment as Rsa3p and Dbp6p during early maturation of 60S ribosomal subunits []. The protein partners of Npa1p include eight putative helicases as well as the novel Npa2p factor. Npa1p can also associate with a subset of H/ACA and C/D small nucleolar RNPs (snoRNPs) involved in the chemical modification of residues in the vicinity of the peptidyl transferase centre []. The protein has also been referred to as Urb1, and this domain at the N-terminal is one of several conserved regions along the length.
Probab=88.91 E-value=29 Score=35.31 Aligned_cols=165 Identities=16% Similarity=0.157 Sum_probs=116.1
Q ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHhhc-CChHHHHHHHHc--CChHHHHHhhccC-----C--------hHHHHHHHHH
Q 005044 251 LPTLILMLRSEDSAIHYEAVGVIGNLVH-SSPNIKKEVLAA--GALQPVIGLLSSC-----C--------SESQREAALL 314 (717)
Q Consensus 251 i~~L~~ll~~~~~~v~~~a~~~L~~l~~-~~~~~~~~~~~~--g~l~~L~~ll~~~-----~--------~~~~~~a~~~ 314 (717)
++.+.+.|.+....+...+++.|..++. ........+... --.+.+..++... . +++|......
T Consensus 58 ~k~lyr~L~~~~~~~~~~~LrLL~~iv~f~~g~~a~~v~~~fd~~~~~l~kll~~~~~~~~~~~~~~~~~~siR~~fI~F 137 (330)
T PF11707_consen 58 LKLLYRSLSSSKPSLTNPALRLLTAIVSFDGGALAREVLRSFDFSLKSLPKLLTPRKKEKEKDSESSKSKPSIRTNFIRF 137 (330)
T ss_pred HHHHHHHhCcCcHHHHHHHHHHHHHHHccCCHHHHHHHHHhcCCchhhHHHHhccccccccccccccccCcCHHHHHHHH
Confidence 6778889998888889999999999988 555666666653 2345566666321 1 2777777764
Q ss_pred HHH-HhcCChhhHHHHH-hcCChHHHHHHhcCCCHHHHHHHHHHHHH-hhcCCCC----chhhHhcCChHHHHHhhcCCC
Q 005044 315 LGQ-FAATDSDCKVHIV-QRGAVRPLIEMLQSPDVQLREMSAFALGR-LAQDMHN----QAGIAHNGGLVPLLKLLDSKN 387 (717)
Q Consensus 315 L~~-l~~~~~~~~~~l~-~~~~l~~L~~~l~~~~~~v~~~a~~~L~~-l~~~~~~----~~~l~~~~~l~~L~~ll~~~~ 387 (717)
+.. +...++..+..++ +.+.+..+.+.|..+++++....+.+|.. +..+..- +..+.....+..|..+....+
T Consensus 138 ~Lsfl~~~~~~~~~~lL~~~~~~~~l~k~l~~D~~~~v~~iL~~l~~~Vl~~~~v~r~~K~~~fn~~~L~~l~~Ly~~~~ 217 (330)
T PF11707_consen 138 WLSFLSSGDPELKRDLLSQKKLMSALFKGLRKDPPETVILILETLKDKVLKDSSVSRSTKCKLFNEWTLSQLASLYSRDG 217 (330)
T ss_pred HHHHHccCCHHHHHHHHHcCchHHHHHhcccCCCHHHHHHHHHHHHHHhccCCCCChhhhhhhcCHHHHHHHHHHhcccC
Confidence 444 4445566665555 46678888888888888898888888885 4444322 345666777888888777666
Q ss_pred h----hHHHHHHHHHHhccCCCcchHHHHHhc
Q 005044 388 G----SLQHNAAFALYGLADNEDNVADFIRVG 415 (717)
Q Consensus 388 ~----~v~~~a~~~L~~l~~~~~~~~~l~~~~ 415 (717)
+ .+...+-..|..++.++...-.+-+.|
T Consensus 218 ~~~~~~~~~~vh~fL~~lcT~p~~Gv~f~d~~ 249 (330)
T PF11707_consen 218 EDEKSSVADLVHEFLLALCTDPKHGVCFPDNG 249 (330)
T ss_pred CcccchHHHHHHHHHHHHhcCCCcccccCCCC
Confidence 6 889999999999988776654444443
No 263
>KOG1788 consensus Uncharacterized conserved protein [Function unknown]
Probab=88.79 E-value=17 Score=41.43 Aligned_cols=253 Identities=19% Similarity=0.139 Sum_probs=142.6
Q ss_pred HHHHHHhc-CChhhHHHHHhCCChHHHHHHHhccccCCCccchhHHHHHHHHHHHHHhhcCchhhhHHHhcCCcHHHHHh
Q 005044 137 AFALGLLA-VKPEHQQLIVDNGALSHLVNLLKRHMDSNCSRAVNSVIRRAADAITNLAHENSSIKTRVRMEGGIPPLVEL 215 (717)
Q Consensus 137 ~~~L~~l~-~~~~~~~~~~~~~~i~~L~~lL~~~~~~~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~l 215 (717)
..+|..+. .+.+++..+.+..++..++.++-+. +-+...++++..|...++..- ...-+-.++..
T Consensus 663 wDcLisllKnnteNqklFreanGvklilpflind----------ehRSslLrivscLitvdpkqv----hhqelmalVdt 728 (2799)
T KOG1788|consen 663 WDCLISLLKNNTENQKLFREANGVKLILPFLIND----------EHRSSLLRIVSCLITVDPKQV----HHQELMALVDT 728 (2799)
T ss_pred HHHHHHHHhccchhhHHHHhhcCceEEEEeeech----------HHHHHHHHHHHHHhccCcccc----cHHHHHHHHHH
Confidence 45666666 7778888888888888777777332 455566677777766454311 11123356666
Q ss_pred hcCC--------C----HHHHHHHHHHHHHhhccChhhHHHHHhcCCHHHHHHHHcC----------CCHHHHHHHHHHH
Q 005044 216 LEFT--------D----TKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRS----------EDSAIHYEAVGVI 273 (717)
Q Consensus 216 l~~~--------~----~~v~~~a~~~L~~L~~~~~~~~~~~~~~g~i~~L~~ll~~----------~~~~v~~~a~~~L 273 (717)
|++. + .........+++.+.-.+...+..+.+.+++..|...|.. +|..+...-...|
T Consensus 729 Lksgmvt~IsgeqyklhfsllcdlmGalwrivgvngsaqrvFgeatGFslLlttLhtfqgftelhdesDlcvyiklfkil 808 (2799)
T KOG1788|consen 729 LKSGMVTRISGEQYKLHFSLLCDLMGALWRIVGVNGSAQRVFGEATGFSLLLTTLHTFQGFTELHDESDLCVYIKLFKIL 808 (2799)
T ss_pred HHhcceeccchhHHHHHHHHHHHHHHHHHHHHccCchheeehhccccHHHHHHHHHHhccchhcCCchhhhhHHHHHHHH
Confidence 6552 1 2355666777888776566777788899888888776641 2333333333443
Q ss_pred HHhh----cCChHHH-------------HHHHHcCCh-----HHHHHhhcc--------CChHHHHHHHHHHHHHh----
Q 005044 274 GNLV----HSSPNIK-------------KEVLAAGAL-----QPVIGLLSS--------CCSESQREAALLLGQFA---- 319 (717)
Q Consensus 274 ~~l~----~~~~~~~-------------~~~~~~g~l-----~~L~~ll~~--------~~~~~~~~a~~~L~~l~---- 319 (717)
..+. ..++.++ ..+.+.|++ ...++++.. +.-..-..|+..+-.+-
T Consensus 809 FrlfTlavcenasNrmklhtvITsqtftsLLresgllcvnler~viqlllElalevlvppfLtSEsaAcaeVfelednif 888 (2799)
T KOG1788|consen 809 FRLFTLAVCENASNRMKLHTVITSQTFTSLLRESGLLCVNLERHVIQLLLELALEVLVPPFLTSESAACAEVFELEDNIF 888 (2799)
T ss_pred HHHHHHHHhhcchhhhheeeeeeHHHHHHHHHHhccceecchHHHHHHHHHHHHHhhCCchhhhhHHHHHHHhhccccee
Confidence 3331 1112221 222223311 011111111 11111112222222221
Q ss_pred -----cCC-hhhHHHHHhcCChHHHHHHhcCCCHHHHHHHHHHHHHhhcCCC-CchhhHhcCChHHHHHhhc---CCChh
Q 005044 320 -----ATD-SDCKVHIVQRGAVRPLIEMLQSPDVQLREMSAFALGRLAQDMH-NQAGIAHNGGLVPLLKLLD---SKNGS 389 (717)
Q Consensus 320 -----~~~-~~~~~~l~~~~~l~~L~~~l~~~~~~v~~~a~~~L~~l~~~~~-~~~~l~~~~~l~~L~~ll~---~~~~~ 389 (717)
++. ....+.+...|++..|+..+-...+.++.+-+..+..+++.++ ++..+-..|.++.|++++. +++..
T Consensus 889 avntPsGqfnpdk~~iynagavRvlirslLlnypK~qlefl~lleSlaRaspfnaelltS~gcvellleIiypflsgssp 968 (2799)
T KOG1788|consen 889 AVNTPSGQFNPDKQKIYNAGAVRVLIRSLLLNYPKLQLEFLNLLESLARASPFNAELLTSAGCVELLLEIIYPFLSGSSP 968 (2799)
T ss_pred eeccCCCCcCchHhhhcccchhHHHHHHHHhhChHHHHHHHHHHHHHhhcCCCchhhhhcccHHHHHHHHhhhhhcCCch
Confidence 100 1234567889999999999988899999999999999998554 4444555577888777763 45556
Q ss_pred HHHHHHHHHHhccC
Q 005044 390 LQHNAAFALYGLAD 403 (717)
Q Consensus 390 v~~~a~~~L~~l~~ 403 (717)
....+..++.-|+.
T Consensus 969 fLshalkIvemLga 982 (2799)
T KOG1788|consen 969 FLSHALKIVEMLGA 982 (2799)
T ss_pred HhhccHHHHHHHhh
Confidence 66666666555543
No 264
>PF06371 Drf_GBD: Diaphanous GTPase-binding Domain; InterPro: IPR010473 Diaphanous-related formins (Drfs) are a family of formin homology (FH) proteins that act as effectors of Rho small GTPases during growth factor-induced cytoskeletal remodelling, stress fibre formation, and cell division []. Drf proteins are characterised by a variety of shared domains: an N-terminal GTPase-binding domain (GBD), formin-homology domains FH1, FH2 (IPR003104 from INTERPRO) and FH3 (IPR010472 from INTERPRO), and a C-terminal conserved Dia-autoregulatory domain (DAD) that binds the GBD. This entry represents the GBD, which is a bifunctional autoinhibitory domain that interacts with and is regulated by activated Rho family members. Mammalian Drf3 contains a CRIB-like motif within its GBD for binding to Cdc42, which is required for Cdc42 to activate and guide Drf3 towards the cell cortex where it remodels the actin skeleton [].; GO: 0003779 actin binding, 0017048 Rho GTPase binding, 0030036 actin cytoskeleton organization; PDB: 3OBV_A 2BNX_A 3EG5_D 2BAP_B 3O4X_B 1Z2C_B 2F31_A.
Probab=88.68 E-value=4.6 Score=37.11 Aligned_cols=109 Identities=18% Similarity=0.204 Sum_probs=69.1
Q ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHhhc-CChHHHHHHHHcCChHHHHHhhcc---------CChHHHHHHHHHHHHHhc
Q 005044 251 LPTLILMLRSEDSAIHYEAVGVIGNLVH-SSPNIKKEVLAAGALQPVIGLLSS---------CCSESQREAALLLGQFAA 320 (717)
Q Consensus 251 i~~L~~ll~~~~~~v~~~a~~~L~~l~~-~~~~~~~~~~~~g~l~~L~~ll~~---------~~~~~~~~a~~~L~~l~~ 320 (717)
...+++.+.+..... ..+.-|..... .+..-.+.+++.||+..|+.+|.. .+......++.++..+..
T Consensus 68 p~~~i~~L~~~~~~~--~~L~~L~v~Lrt~~~~Wv~~Fl~~~G~~~L~~~L~~~~~~~~~~~~~~~~~~~~l~Clkal~n 145 (187)
T PF06371_consen 68 PEWYIKKLKSRPSTS--KILKSLRVSLRTNPISWVQEFLELGGLEALLNVLSKLNKKKEKSEEDIDIEHECLRCLKALMN 145 (187)
T ss_dssp HHHHHHHHTTT--HH--HHHHHHHHHHHHS-HHHHHHH-HHHHHHHHHHHHHHHHTHHCTCTTCHHHHHHHHHHHHHHTS
T ss_pred HHHHHHHHHccCccH--HHHHHHHHHhccCCchHHHHhccCCCHHHHHHHHHHhhhhhhhcchhHHHHHHHHHHHHHHHc
Confidence 445666665543322 22222222222 223345777788999999988854 234677788899998864
Q ss_pred CChhhHHHHHhcCChHHHHHHhcCCCHHHHHHHHHHHHHhh
Q 005044 321 TDSDCKVHIVQRGAVRPLIEMLQSPDVQLREMSAFALGRLA 361 (717)
Q Consensus 321 ~~~~~~~~l~~~~~l~~L~~~l~~~~~~v~~~a~~~L~~l~ 361 (717)
........+...+++..|+..+.+++..++..++..|..+|
T Consensus 146 ~~~G~~~v~~~~~~v~~i~~~L~s~~~~~r~~~leiL~~lc 186 (187)
T PF06371_consen 146 TKYGLEAVLSHPDSVNLIALSLDSPNIKTRKLALEILAALC 186 (187)
T ss_dssp SHHHHHHHHCSSSHHHHHHHT--TTSHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHcCcHHHHHHHHHHCCCCHHHHHHHHHHHHHHH
Confidence 43333444555889999999999999999999999998876
No 265
>PF11864 DUF3384: Domain of unknown function (DUF3384); InterPro: IPR024584 This entry represents the N-terminal domain of tuberin which is functionally uncharacterised.
Probab=88.00 E-value=42 Score=36.08 Aligned_cols=90 Identities=17% Similarity=0.193 Sum_probs=55.3
Q ss_pred HHHHHHHHHHHHHhcCChhhHHHHHhcCChHHHHHHhcC------CCHHHHHHHHHHHHHhhcCC--CCchhhHhcC--C
Q 005044 306 ESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQS------PDVQLREMSAFALGRLAQDM--HNQAGIAHNG--G 375 (717)
Q Consensus 306 ~~~~~a~~~L~~l~~~~~~~~~~l~~~~~l~~L~~~l~~------~~~~v~~~a~~~L~~l~~~~--~~~~~l~~~~--~ 375 (717)
+....+-.++.||+..... ...+..|+.+|.+ .+..+..-|+..+..+..+. +.-..+--.- .
T Consensus 230 ~l~~~~w~~m~nL~~S~~g-------~~~i~~L~~iL~~~~~~~~~~~~~lRGAv~~l~~ll~~~~~~~~~~l~~~~~~v 302 (464)
T PF11864_consen 230 SLCKPSWRTMRNLLKSHLG-------HSAIRTLCDILRSPDPQNKRDINVLRGAVFFLRMLLWGSGEQGYPSLPFSPSSV 302 (464)
T ss_pred ccchhHHHHHHHHHcCccH-------HHHHHHHHHHHcccCccccccHHHHhhHHHHHHHHHhccccCCcceecccHHHH
Confidence 5556666788888743211 2245678888832 24556667788888877654 2222222223 6
Q ss_pred hHHHHHhhcCCChhHHHHHHHHHHhcc
Q 005044 376 LVPLLKLLDSKNGSLQHNAAFALYGLA 402 (717)
Q Consensus 376 l~~L~~ll~~~~~~v~~~a~~~L~~l~ 402 (717)
++.+...++.+++.+-...+..+.++.
T Consensus 303 l~sl~~al~~~~~~v~~eIl~~i~~ll 329 (464)
T PF11864_consen 303 LPSLLNALKSNSPRVDYEILLLINRLL 329 (464)
T ss_pred HHHHHHHHhCCCCeehHHHHHHHHHHH
Confidence 777888888877777666666666665
No 266
>PF01466 Skp1: Skp1 family, dimerisation domain; InterPro: IPR016072 SKP1 (together with SKP2) was identified as an essential component of the cyclin A-CDK2 S phase kinase complex []. It was found to bind several F-box containing proteins (e.g., Cdc4, Skp2, cyclin F) and to be involved in the ubiquitin protein degradation pathway. A yeast homologue of SKP1 (P52286) was identified in the centromere bound kinetochore complex [] and is also involved in the ubiquitin pathway []. In Dictyostelium discoideum (Slime mold) FP21 was shown to be glycosylated in the cytosol and has homology to SKP1 []. This entry represents a dimerisation domain found at the C-terminal of SKP1 proteins [], as well as in subunit D of the centromere DNA-binding protein complex Cbf3 []. This domain is multi-helical in structure, and consists of an interlocked herterodimer in F-box proteins.; GO: 0006511 ubiquitin-dependent protein catabolic process; PDB: 2P1O_A 3OGL_G 3OGM_A 3C6O_A 2P1N_A 2P1Q_A 3OGK_I 3C6N_A 3C6P_A 2P1P_A ....
Probab=87.84 E-value=1.3 Score=33.77 Aligned_cols=46 Identities=33% Similarity=0.400 Sum_probs=31.5
Q ss_pred cchhhHHHHHHHHHhhChHhHHHHHHHHHHhcCC---hhcHHHHHHHHH
Q 005044 615 VTLDIAQDLLRAADQYLLEGLKRLCEYTIAQDIS---LENVSSMYELSE 660 (717)
Q Consensus 615 ~~~~~~~~ll~~A~~~~~~~l~~~c~~~l~~~i~---~~n~~~~~~~a~ 660 (717)
++...+.+++.+|++++++.|...|...+...+. ++....++.+..
T Consensus 11 ~~~~~L~~l~~AA~yL~I~~L~~~~~~~iA~~i~gks~eeir~~fgi~~ 59 (78)
T PF01466_consen 11 VDNDELFDLLNAANYLDIKGLLDLCCKYIANMIKGKSPEEIRKYFGIEN 59 (78)
T ss_dssp S-HHHHHHHHHHHHHHT-HHHHHHHHHHHHHHHTTS-HHHHHHHHT---
T ss_pred cCHHHHHHHHHHHHHHcchHHHHHHHHHHHHHhcCCCHHHHHHHcCCCC
Confidence 4667899999999999999999999988877654 334444443433
No 267
>KOG1525 consensus Sister chromatid cohesion complex Cohesin, subunit PDS5 [Cell cycle control, cell division, chromosome partitioning]
Probab=87.60 E-value=46 Score=40.03 Aligned_cols=175 Identities=14% Similarity=0.045 Sum_probs=93.7
Q ss_pred cCChHHHHHHhcCCCHHHHHHHHHHHHHhhcCCCCchhhHhcCChHHHHHhhcCCChhHHHHHHHHHHhccC-CCcchHH
Q 005044 332 RGAVRPLIEMLQSPDVQLREMSAFALGRLAQDMHNQAGIAHNGGLVPLLKLLDSKNGSLQHNAAFALYGLAD-NEDNVAD 410 (717)
Q Consensus 332 ~~~l~~L~~~l~~~~~~v~~~a~~~L~~l~~~~~~~~~l~~~~~l~~L~~ll~~~~~~v~~~a~~~L~~l~~-~~~~~~~ 410 (717)
.+++|.|-..|.+.+..+|..|...++.+......+-.=-........+.-+.+.+.+||..++....+.-. ++.....
T Consensus 258 ~~vip~l~~eL~se~~~~Rl~a~~lvg~~~~~~~~~l~~~~~~~~~~fl~r~~D~~~~vR~~~v~~~~~~l~~~~~~~~~ 337 (1266)
T KOG1525|consen 258 LAVIPQLEFELLSEQEEVRLKAVKLVGRMFSDKDSQLSETYDDLWSAFLGRFNDISVEVRMECVESIKQCLLNNPSIAKA 337 (1266)
T ss_pred HHHHHHHHHHHhcchHHHHHHHHHHHHHHHhcchhhhcccchHHHHHHHHHhccCChhhhhhHHHHhHHHHhcCchhhhH
Confidence 468899999999999999999999999998765443221111234446666778889999998887776643 2222221
Q ss_pred HHHhcCcc-ccccchhHHhhhHHHHHHHHHHHHHHhhhchHHHHHHHHhhcchhHHHHHHHHHHhccCC-----CC-Cce
Q 005044 411 FIRVGGVQ-KLQDGEFIVQATKDCVAKTLKRLEEKIHGRVLNHLLYLMRVAEKGVQRRVALALAHLCSP-----DD-QRT 483 (717)
Q Consensus 411 l~~~~~i~-~L~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~L~~ll~~~~~~v~~~a~~aL~~l~~~-----~~-~~~ 483 (717)
....-.+. ...+....+...--...-............++..+...+++....||..|..-|..+-.. .. ...
T Consensus 338 ~~~~~~l~~~~~D~~~rir~~v~i~~~~v~~~~l~~~~~ll~~~~eR~rDKk~~VR~~Am~~LaqlYk~~~~~~~~~~k~ 417 (1266)
T KOG1525|consen 338 STILLALRERDLDEDVRVRTQVVIVACDVMKFKLVYIPLLLKLVAERLRDKKIKVRKQAMNGLAQLYKNVYCLRSAGGKE 417 (1266)
T ss_pred HHHHHHHHhhcCChhhhheeeEEEEEeehhHhhhhhhHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHhhccCccc
Confidence 11111000 001100000000000000111111111222566666777888999999999988776431 11 111
Q ss_pred eeecCC-CHHHHHHHhcCCCchhh
Q 005044 484 IFIDGG-GLELLLGLLGSTNPKQQ 506 (717)
Q Consensus 484 ~~~~~~-~l~~L~~ll~~~~~~v~ 506 (717)
.-.... +...|+.++...+.+.|
T Consensus 418 ~t~~~swIp~kLL~~~y~~~~~~r 441 (1266)
T KOG1525|consen 418 ITPPFSWIPDKLLHLYYENDLDDR 441 (1266)
T ss_pred ccccccccchhHHhhHhhccccHH
Confidence 111112 23456777766655555
No 268
>COG5201 SKP1 SCF ubiquitin ligase, SKP1 component [Posttranslational modification, protein turnover, chaperones]
Probab=87.56 E-value=7.2 Score=32.05 Aligned_cols=90 Identities=18% Similarity=0.191 Sum_probs=64.4
Q ss_pred EEcCeEeehhHHHHhhccHHHHHhhcCCCCCCCCcceEcCCCCHHHHHHHHHHHhcCc--cc------------------
Q 005044 555 LVEGRRFYAHRICLLASSDAFRAMFDGGYREKDARDIEIPNIRWEVFELMMRFIYTGS--VD------------------ 614 (717)
Q Consensus 555 ~~~~~~~~~h~~il~~~s~~f~~~~~~~~~e~~~~~i~l~~~~~~~~~~~l~~~Yt~~--~~------------------ 614 (717)
..+|+.|.+.+.+ +-+|-..+.|+... .+. .-.+..+++...+|..+++|+-... ..
T Consensus 8 s~dge~F~vd~~i-AerSiLikN~l~d~-~~~-n~p~p~pnVrSsvl~kv~ew~ehh~~s~sede~d~~~rks~p~D~wd 84 (158)
T COG5201 8 SIDGEIFRVDENI-AERSILIKNMLCDS-TAC-NYPIPAPNVRSSVLMKVQEWMEHHTSSLSEDENDLEIRKSKPSDFWD 84 (158)
T ss_pred ecCCcEEEehHHH-HHHHHHHHHHhccc-ccc-CCCCcccchhHHHHHHHHHHHHhccccCCCccChHhhhccCCccHHH
Confidence 3467888887766 45888888877532 121 1236678999999999999995321 11
Q ss_pred -----cchhhHHHHHHHHHhhChHhHHHHHHHHHHhcC
Q 005044 615 -----VTLDIAQDLLRAADQYLLEGLKRLCEYTIAQDI 647 (717)
Q Consensus 615 -----~~~~~~~~ll~~A~~~~~~~l~~~c~~~l~~~i 647 (717)
.+.+++.++..+|+++.++.|.+.|...+...+
T Consensus 85 r~Fm~vDqemL~eI~laaNYL~ikpLLd~gCKivaemi 122 (158)
T COG5201 85 RFFMEVDQEMLLEICLAANYLEIKPLLDLGCKIVAEMI 122 (158)
T ss_pred HHHHHhhHHHHHHHHHhhccccchHHHHHHHHHHHHHH
Confidence 123557789999999999999999987766554
No 269
>KOG2933 consensus Uncharacterized conserved protein [Function unknown]
Probab=87.24 E-value=4.8 Score=39.12 Aligned_cols=140 Identities=15% Similarity=0.236 Sum_probs=92.6
Q ss_pred hHHHHHhhccCChHHHHHHHHHHHHHhcCChhhHHHHHhcCChHHHHHHhcCCCHHHHHHHHHHHHHhhcCCCCchhhHh
Q 005044 293 LQPVIGLLSSCCSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQSPDVQLREMSAFALGRLAQDMHNQAGIAH 372 (717)
Q Consensus 293 l~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~l~~~~~l~~L~~~l~~~~~~v~~~a~~~L~~l~~~~~~~~~l~~ 372 (717)
+...+..|.+.+|.....++..+..++...++.....+ ..++..+++-+++..+.|...|+-++..+...-.+.-.-
T Consensus 90 l~~~l~~L~s~dW~~~vdgLn~irrLs~fh~e~l~~~L-~~vii~vvkslKNlRS~VsraA~~t~~difs~ln~~i~~-- 166 (334)
T KOG2933|consen 90 LKQALKKLSSDDWEDKVDGLNSIRRLSEFHPESLNPML-HEVIIAVVKSLKNLRSAVSRAACMTLADIFSSLNNSIDQ-- 166 (334)
T ss_pred HHHHHHHhchHHHHHHhhhHHHHHHHHhhhHHHHHHHH-HHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHHHH--
Confidence 44556667778888888888888888754433222221 235566777778888899999999999888643332111
Q ss_pred cCChHHHH-Hhhc---CCChhHHHHHHHHHHhccCCCcchHHHHHhcCccccccchhHHhhhHHHHHHHHHHHHHHhhhc
Q 005044 373 NGGLVPLL-KLLD---SKNGSLQHNAAFALYGLADNEDNVADFIRVGGVQKLQDGEFIVQATKDCVAKTLKRLEEKIHGR 448 (717)
Q Consensus 373 ~~~l~~L~-~ll~---~~~~~v~~~a~~~L~~l~~~~~~~~~l~~~~~i~~L~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 448 (717)
.+..++ .+++ .++.-|++.|..+|..+..+.... .
T Consensus 167 --~ld~lv~~Ll~ka~~dnrFvreda~kAL~aMV~~vtp~---------------------------------------~ 205 (334)
T KOG2933|consen 167 --ELDDLVTQLLHKASQDNRFVREDAEKALVAMVNHVTPQ---------------------------------------K 205 (334)
T ss_pred --HHHHHHHHHHhhhcccchHHHHHHHHHHHHHHhccChH---------------------------------------H
Confidence 233333 3343 345568888888998887654331 2
Q ss_pred hHHHHHHHHhhcchhHHHHHHHHHHhcc
Q 005044 449 VLNHLLYLMRVAEKGVQRRVALALAHLC 476 (717)
Q Consensus 449 ~~~~L~~ll~~~~~~v~~~a~~aL~~l~ 476 (717)
+++.|+..+...++.++..++.+..+..
T Consensus 206 ~L~~L~~~~~~~n~r~r~~a~~~~~~~v 233 (334)
T KOG2933|consen 206 LLRKLIPILQHSNPRVRAKAALCFSRCV 233 (334)
T ss_pred HHHHHHHHHhhhchhhhhhhhccccccc
Confidence 5667888888999999988877666553
No 270
>KOG1949 consensus Uncharacterized conserved protein [Function unknown]
Probab=86.85 E-value=28 Score=37.97 Aligned_cols=186 Identities=14% Similarity=0.106 Sum_probs=109.1
Q ss_pred HHHHHhhcCCCCCccccCCCccchHHHhHHHHHHHHhc--CChhh----HHHHHhCCChHHHHHHHhccccCCCccchhH
Q 005044 107 PALVKHLQAPPTSEADRNLKPFEHEVEKGSAFALGLLA--VKPEH----QQLIVDNGALSHLVNLLKRHMDSNCSRAVNS 180 (717)
Q Consensus 107 ~~L~~lL~~~~~~~~~~~~~~~~~~v~~~a~~~L~~l~--~~~~~----~~~~~~~~~i~~L~~lL~~~~~~~~~~~~~~ 180 (717)
|.|.+-|+..+. .||..|+..+.++- .+|+. .+.+.+.. ...+..+|++.-+ .
T Consensus 177 p~l~R~L~a~Ns------------~VrsnAa~lf~~~fP~~dpd~~~e~mD~i~~kQ-f~~l~~LL~d~~p--------~ 235 (1005)
T KOG1949|consen 177 PILWRGLKARNS------------EVRSNAALLFVEAFPIRDPDLHAEEMDSIIQKQ-FEELYSLLEDPYP--------M 235 (1005)
T ss_pred HHHHHhhccCch------------hhhhhHHHHHHHhccCCCCCccHHHHHHHHHHH-HHHHHHHhcCCCc--------h
Confidence 555666666666 99999999999988 55544 33344332 5678888888766 7
Q ss_pred HHHHHHHHHHHHhhcCchhhhHHHhcCCcHHHHHh-hcCCCHHHHHHHHHHHHHhhccChhhHHHHHhcCCHHHHHHHHc
Q 005044 181 VIRRAADAITNLAHENSSIKTRVRMEGGIPPLVEL-LEFTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLR 259 (717)
Q Consensus 181 ~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~l-l~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~g~i~~L~~ll~ 259 (717)
++..|..-+..........-..-.-...+..+..- ..+...+||..+...|..+.. ++.....+- . ++|.+-..|.
T Consensus 236 VRS~a~~gv~k~~s~fWe~iP~~i~~~ll~kI~d~~a~dt~s~VR~svf~gl~~~l~-np~sh~~le-~-~Lpal~~~l~ 312 (1005)
T KOG1949|consen 236 VRSTAILGVCKITSKFWEMIPPTILIDLLKKITDELAFDTSSDVRCSVFKGLPMILD-NPLSHPLLE-Q-LLPALRYSLH 312 (1005)
T ss_pred HHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHhhhccchheehhHhcCcHHHHc-CccchhHHH-H-HHHhcchhhh
Confidence 77777666655554222110000001112222222 234557899999999999885 555433322 2 4566667778
Q ss_pred CCCHHHHHHHHHHHHHhhcCChHHHHHHHHcCChHHHHHhhccCChHHHHHHHHHHHHHh
Q 005044 260 SEDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLSSCCSESQREAALLLGQFA 319 (717)
Q Consensus 260 ~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~l~~L~~ll~~~~~~~~~~a~~~L~~l~ 319 (717)
+....||..++..|..+-.. . ...+..---.+.++..|..++..+.+..+..+.+.+
T Consensus 313 D~se~VRvA~vd~ll~ik~v-r--a~~f~~I~~~d~~l~~L~~d~~~v~rr~~~li~~s~ 369 (1005)
T KOG1949|consen 313 DNSEKVRVAFVDMLLKIKAV-R--AAKFWKICPMDHILVRLETDSRPVSRRLVSLIFNSF 369 (1005)
T ss_pred ccchhHHHHHHHHHHHHHhh-h--hhhhhccccHHHHHHHHhccccHHHHHHHHHHHHhh
Confidence 88999999999998887211 1 111222223455566666666555555555555543
No 271
>PF08506 Cse1: Cse1; InterPro: IPR013713 The exchange of macromolecules between the nucleus and cytoplasm takes place through nuclear pore complexes within the nuclear membrane. Active transport of large molecules through these pore complexes require carrier proteins, called karyopherins (importins and exportins), which shuttle between the two compartments. This domain is found in exportin Cse1 (also known as importin-alpha re-exporter). Exportin Cse1 mediates nuclear transport of importin-alpha back into the cytosol, where importin-alpha functions as a transporter of proteins carrying nuclear localisation signals (NLS) from the cytoplasm into the nucleus [, , ]. This domain contains HEAT repeats. More information about these proteins can be found at Protein of the Month: Importins [].; GO: 0006886 intracellular protein transport; PDB: 1Z3H_B 1WA5_C.
Probab=86.58 E-value=29 Score=35.79 Aligned_cols=147 Identities=14% Similarity=0.157 Sum_probs=83.4
Q ss_pred HHhCCChHHHHHHHhccccCCCccchhHHHHHHHHHHHHHhhcCchhhhHHHhcCCcHHHHHhhc------CCCHHHHHH
Q 005044 153 IVDNGALSHLVNLLKRHMDSNCSRAVNSVIRRAADAITNLAHENSSIKTRVRMEGGIPPLVELLE------FTDTKVQRA 226 (717)
Q Consensus 153 ~~~~~~i~~L~~lL~~~~~~~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~------~~~~~v~~~ 226 (717)
+.+..-...+-.-+...+.. .-+..|+..+..++...+..-..++ ...+-.++. ..++.-+..
T Consensus 206 lfEddP~EYIrrd~e~sd~~-------TrR~AA~dfl~~L~~~~~~~v~~i~----~~~i~~~l~~y~~~~~~~w~~KD~ 274 (370)
T PF08506_consen 206 LFEDDPEEYIRRDLEGSDSD-------TRRRAACDFLRSLCKKFEKQVTSIL----MQYIQQLLQQYASNPSNNWRSKDG 274 (370)
T ss_dssp HHHHSHHHHHHHHSCSS----------SHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHH-TTT-HHHHHH
T ss_pred HHccCHHHHHHhhccccccC-------CcHHHHHHHHHHHHHHHhHHHHHHH----HHHHHHHHHHHhhCCcccHHHHHH
Confidence 34444455565555443221 6778889999999974332211111 122223332 356788889
Q ss_pred HHHHHHHhhccChh------------hHHHHHhcCCHHHHHHHHcCCCHHHHHHHHHHHHHhhcCChHHHHHHHHcCChH
Q 005044 227 AAGALRTLAFKNDE------------NKNQIVECNALPTLILMLRSEDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQ 294 (717)
Q Consensus 227 a~~~L~~L~~~~~~------------~~~~~~~~g~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~l~ 294 (717)
|+..+..|+..... +...+....++|.|. --.+..+-++..|++.+...-..-+. +.+ .++++
T Consensus 275 Al~Li~ala~k~~t~~~Gvt~~~~~v~v~~Ff~~~v~peL~-~~~~~~piLka~aik~~~~Fr~~l~~--~~l--~~~~~ 349 (370)
T PF08506_consen 275 ALYLIGALASKGSTTKSGVTQTNELVDVVDFFSQHVLPELQ-PDVNSHPILKADAIKFLYTFRNQLPK--EQL--LQIFP 349 (370)
T ss_dssp HHHHHHHHHBSS--BTTB-S-B-TTS-HHHHHHHHTCHHHH--SS-S-HHHHHHHHHHHHHHGGGS-H--HHH--HHHHH
T ss_pred HHHHHHHHHhhhccccCCcccccccccHHHHHHHHhHHHhc-ccCCCCcchHHHHHHHHHHHHhhCCH--HHH--HHHHH
Confidence 99999999874321 123333344455444 11134667888899999887433221 222 34799
Q ss_pred HHHHhhccCChHHHHHHHHHH
Q 005044 295 PVIGLLSSCCSESQREAALLL 315 (717)
Q Consensus 295 ~L~~ll~~~~~~~~~~a~~~L 315 (717)
.++.+|.+++.-+...|+.++
T Consensus 350 ~l~~~L~~~~~vv~tyAA~~i 370 (370)
T PF08506_consen 350 LLVNHLQSSSYVVHTYAAIAI 370 (370)
T ss_dssp HHHHHTTSS-HHHHHHHHHHH
T ss_pred HHHHHhCCCCcchhhhhhhhC
Confidence 999999999988888888764
No 272
>COG5098 Chromosome condensation complex Condensin, subunit D2 [Chromatin structure and dynamics / Cell division and chromosome partitioning]
Probab=86.23 E-value=15 Score=39.85 Aligned_cols=128 Identities=17% Similarity=0.143 Sum_probs=91.9
Q ss_pred HHHHHHHHHHHHHhhcCchhhhHHHhcCCcHHHHHhhc-CCCHHHHHHHHHHHHHhhccChhhHHHHHhcCCHHHHHHHH
Q 005044 180 SVIRRAADAITNLAHENSSIKTRVRMEGGIPPLVELLE-FTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILML 258 (717)
Q Consensus 180 ~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~-~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~g~i~~L~~ll 258 (717)
+++..|.-+|..+.--+.+.. ...+|.++..+. +++|.+|..|.-.|..++-........ ....|.+-|
T Consensus 911 ~lq~aA~l~L~klMClS~~fc-----~ehlpllIt~mek~p~P~IR~NaVvglgD~~vcfN~~~de-----~t~yLyrrL 980 (1128)
T COG5098 911 ELQVAAYLSLYKLMCLSFEFC-----SEHLPLLITSMEKHPIPRIRANAVVGLGDFLVCFNTTADE-----HTHYLYRRL 980 (1128)
T ss_pred HHHHHHHHHHHHHHHHhHHHH-----HHHHHHHHHHHhhCCCcceeccceeeccccceehhhhhHH-----HHHHHHHHh
Confidence 777777777776543222221 235788888775 799999999988888776422222221 245678888
Q ss_pred cCCCHHHHHHHHHHHHHhhcCChHHHHHHHHcCChHHHHHhhccCChHHHHHHHHHHHHHhcCC
Q 005044 259 RSEDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLSSCCSESQREAALLLGQFAATD 322 (717)
Q Consensus 259 ~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~l~~L~~ll~~~~~~~~~~a~~~L~~l~~~~ 322 (717)
.+.+..|++.|+.++..+.-.. .+.-.|-++.+..+|.+++.++...|-..+..++..+
T Consensus 981 ~De~~~V~rtclmti~fLilag-----q~KVKGqlg~ma~~L~deda~Isdmar~fft~~a~Kd 1039 (1128)
T COG5098 981 GDEDADVRRTCLMTIHFLILAG-----QLKVKGQLGKMALLLTDEDAEISDMARHFFTQIAKKD 1039 (1128)
T ss_pred cchhhHHHHHHHHHHHHHHHcc-----ceeeccchhhhHhhccCCcchHHHHHHHHHHHHHhcc
Confidence 8999999999999999985331 2223577889999999999999888888888887644
No 273
>KOG2933 consensus Uncharacterized conserved protein [Function unknown]
Probab=86.21 E-value=7.2 Score=37.93 Aligned_cols=140 Identities=17% Similarity=0.204 Sum_probs=91.7
Q ss_pred cHHHHHhhcCCCHHHHHHHHHHHHHhhccChhhHHHHHhcCCHHHHHHHHcCCCHHHHHHHHHHHHHhhcCChHHHHHHH
Q 005044 209 IPPLVELLEFTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSEDSAIHYEAVGVIGNLVHSSPNIKKEVL 288 (717)
Q Consensus 209 i~~L~~ll~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~ 288 (717)
+...+..|.+.+++....++..++.|+...++....+.. .++-.+++-+++....|...|+.++..+..........
T Consensus 90 l~~~l~~L~s~dW~~~vdgLn~irrLs~fh~e~l~~~L~-~vii~vvkslKNlRS~VsraA~~t~~difs~ln~~i~~-- 166 (334)
T KOG2933|consen 90 LKQALKKLSSDDWEDKVDGLNSIRRLSEFHPESLNPMLH-EVIIAVVKSLKNLRSAVSRAACMTLADIFSSLNNSIDQ-- 166 (334)
T ss_pred HHHHHHHhchHHHHHHhhhHHHHHHHHhhhHHHHHHHHH-HHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHHHH--
Confidence 345566777888999999999999888654444333332 25666777888888999999999999997543322222
Q ss_pred HcCChHHHHHh-hcc---CChHHHHHHHHHHHHHhcCChhhHHHHHhcCChHHHHHHhcCCCHHHHHHHHHHHHHhh
Q 005044 289 AAGALQPVIGL-LSS---CCSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQSPDVQLREMSAFALGRLA 361 (717)
Q Consensus 289 ~~g~l~~L~~l-l~~---~~~~~~~~a~~~L~~l~~~~~~~~~~l~~~~~l~~L~~~l~~~~~~v~~~a~~~L~~l~ 361 (717)
.++.++.. +.. ++.=++..|-.+|..+..+-.. ..+++.|+..+++.++.++..++.+..++.
T Consensus 167 ---~ld~lv~~Ll~ka~~dnrFvreda~kAL~aMV~~vtp-------~~~L~~L~~~~~~~n~r~r~~a~~~~~~~v 233 (334)
T KOG2933|consen 167 ---ELDDLVTQLLHKASQDNRFVREDAEKALVAMVNHVTP-------QKLLRKLIPILQHSNPRVRAKAALCFSRCV 233 (334)
T ss_pred ---HHHHHHHHHHhhhcccchHHHHHHHHHHHHHHhccCh-------HHHHHHHHHHHhhhchhhhhhhhccccccc
Confidence 23333333 332 2344677777787777532111 224677888888888888888776665554
No 274
>smart00638 LPD_N Lipoprotein N-terminal Domain.
Probab=86.07 E-value=36 Score=37.85 Aligned_cols=162 Identities=19% Similarity=0.177 Sum_probs=91.9
Q ss_pred hHHHHHHHhccccCCCccchhHHHHHHHHHHHHHhh----cCchhhhHHHhcCCcHHHHHhhc----CCCHHHHHHHHHH
Q 005044 159 LSHLVNLLKRHMDSNCSRAVNSVIRRAADAITNLAH----ENSSIKTRVRMEGGIPPLVELLE----FTDTKVQRAAAGA 230 (717)
Q Consensus 159 i~~L~~lL~~~~~~~~~~~~~~~~~~a~~~L~~l~~----~~~~~~~~~~~~~~i~~L~~ll~----~~~~~v~~~a~~~ 230 (717)
+..+..+++........ .+...|+-.++.+.. ..+... .......++.+...|. ..+.+.+...+.+
T Consensus 395 l~~l~~l~~~~~~~~~~----~l~~sa~l~~~~lv~~~c~~~~~~~-~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~Lka 469 (574)
T smart00638 395 LKALFELAESPEVQKQP----YLRESALLAYGSLVRRYCVNTPSCP-DFVLEELLKYLHELLQQAVSKGDEEEIQLYLKA 469 (574)
T ss_pred HHHHHHHhcCccccccH----HHHHHHHHHHHHHHHHHhcCCCCCC-hhhHHHHHHHHHHHHHHHHhcCCchheeeHHHh
Confidence 56677777654332111 455555555555553 222111 1122234556665553 3455667788888
Q ss_pred HHHhhccChhhHHHHHhcCCHHHHHHHHc---CCCHHHHHHHHHHHHHhhcCChHHHHHHHHcCChHHHHHhhcc--CCh
Q 005044 231 LRTLAFKNDENKNQIVECNALPTLILMLR---SEDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLSS--CCS 305 (717)
Q Consensus 231 L~~L~~~~~~~~~~~~~~g~i~~L~~ll~---~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~l~~L~~ll~~--~~~ 305 (717)
|.|+.. + ..++.+...+. ..+..+|..|+++|..++...+.. +-+.++.++.+ .++
T Consensus 470 LGN~g~--~---------~~i~~l~~~l~~~~~~~~~iR~~Av~Alr~~a~~~p~~--------v~~~l~~i~~n~~e~~ 530 (574)
T smart00638 470 LGNAGH--P---------SSIKVLEPYLEGAEPLSTFIRLAAILALRNLAKRDPRK--------VQEVLLPIYLNRAEPP 530 (574)
T ss_pred hhccCC--h---------hHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHHHhCchH--------HHHHHHHHHcCCCCCh
Confidence 888874 2 23455555555 235689999999999887544432 24456666655 357
Q ss_pred HHHHHHHHHHHHHhcCChhhHHHHHhcCChHHHHHHhcC-CCHHHHHHHH
Q 005044 306 ESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQS-PDVQLREMSA 354 (717)
Q Consensus 306 ~~~~~a~~~L~~l~~~~~~~~~~l~~~~~l~~L~~~l~~-~~~~v~~~a~ 354 (717)
++|..|..+|... +|.. ..+..+...+.. ++.+|.....
T Consensus 531 EvRiaA~~~lm~t---~P~~-------~~l~~ia~~l~~E~~~QV~sfv~ 570 (574)
T smart00638 531 EVRMAAVLVLMET---KPSV-------ALLQRIAELLNKEPNLQVASFVY 570 (574)
T ss_pred HHHHHHHHHHHhc---CCCH-------HHHHHHHHHHhhcCcHHHHHHhH
Confidence 8888877776654 1222 134556666654 5566655433
No 275
>COG5218 YCG1 Chromosome condensation complex Condensin, subunit G [Chromatin structure and dynamics / Cell division and chromosome partitioning]
Probab=85.83 E-value=54 Score=35.14 Aligned_cols=102 Identities=20% Similarity=0.163 Sum_probs=72.8
Q ss_pred cCCcHHHHHhhcCCCHHHHHHHHHHHHHhhccChhhHHHHHhcCCHHHHHHHHcCCCHHHHHHHHHHHHHhhcC--ChHH
Q 005044 206 EGGIPPLVELLEFTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSEDSAIHYEAVGVIGNLVHS--SPNI 283 (717)
Q Consensus 206 ~~~i~~L~~ll~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~--~~~~ 283 (717)
.|.+..+++.+.+++..||..++..|+.++. .-.......-.|++..|.+-+-+.++.||.+|+.+|+.+-.. +++.
T Consensus 90 ~~~~~h~lRg~eskdk~VR~r~lqila~~~d-~v~eIDe~l~N~L~ekl~~R~~DRE~~VR~eAv~~L~~~Qe~~~neen 168 (885)
T COG5218 90 AGTFYHLLRGTESKDKKVRKRSLQILALLSD-VVREIDEVLANGLLEKLSERLFDREKAVRREAVKVLCYYQEMELNEEN 168 (885)
T ss_pred HHHHHHHHhcccCcchhHHHHHHHHHHHHHH-hcchHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHhccCChHH
Confidence 3566778888888999999999999999985 334444555567778888878888999999999999988432 2222
Q ss_pred HHHHHHcCChHHHHHhhcc-CChHHHHHHHHHH
Q 005044 284 KKEVLAAGALQPVIGLLSS-CCSESQREAALLL 315 (717)
Q Consensus 284 ~~~~~~~g~l~~L~~ll~~-~~~~~~~~a~~~L 315 (717)
.....|+.+++. ++.++|+.|..-+
T Consensus 169 -------~~~n~l~~~vqnDPS~EVRr~allni 194 (885)
T COG5218 169 -------RIVNLLKDIVQNDPSDEVRRLALLNI 194 (885)
T ss_pred -------HHHHHHHHHHhcCcHHHHHHHHHHHe
Confidence 123456666654 5578888765433
No 276
>COG5209 RCD1 Uncharacterized protein involved in cell differentiation/sexual development [General function prediction only]
Probab=85.56 E-value=13 Score=34.26 Aligned_cols=99 Identities=10% Similarity=0.053 Sum_probs=70.0
Q ss_pred HHHHHHHHHHHHhhcCchhhhHHHhcCCcHHHHHhhcC-----CCHHHHHHHHHHHHHhhccCh-hhHHHHHhcCCHHHH
Q 005044 181 VIRRAADAITNLAHENSSIKTRVRMEGGIPPLVELLEF-----TDTKVQRAAAGALRTLAFKND-ENKNQIVECNALPTL 254 (717)
Q Consensus 181 ~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~-----~~~~v~~~a~~~L~~L~~~~~-~~~~~~~~~g~i~~L 254 (717)
-...++..|..++. +++.+..+.+..+--.+-.+|.. +..-+|..+++++..|...+. .....+....++|..
T Consensus 116 RvcnaL~lLQclaS-hPetk~~Fl~AhiplflypfLntss~~~~fEyLRltsLGVIgaLvkNdsq~vi~fLltTeivPLc 194 (315)
T COG5209 116 RVCNALNLLQCLAS-HPETKKVFLDAHIPLFLYPFLNTSSSNSKFEYLRLTSLGVIGALVKNDSQYVIKFLLTTEIVPLC 194 (315)
T ss_pred HHHHHHHHHHHHhc-CcchheeeeecccceeeHhhhhccccCCccceeeehHHHHHHHHHhCCCHHHHHHHHhhhHHHHH
Confidence 34456666666666 78888877776654444444422 335688999999999997544 345556678899999
Q ss_pred HHHHcCCCHHHHHHHHHHHHHhhcCC
Q 005044 255 ILMLRSEDSAIHYEAVGVIGNLVHSS 280 (717)
Q Consensus 255 ~~ll~~~~~~v~~~a~~~L~~l~~~~ 280 (717)
++.+..+++--+..|+.++..+..++
T Consensus 195 LrIme~gSElSktvaifI~qkil~dD 220 (315)
T COG5209 195 LRIMELGSELSKTVAIFIFQKILGDD 220 (315)
T ss_pred HHHHHhhhHHHHHHHHHHHHHHhccc
Confidence 99999888877888888887776543
No 277
>PF14225 MOR2-PAG1_C: Cell morphogenesis C-terminal
Probab=85.53 E-value=37 Score=33.01 Aligned_cols=170 Identities=21% Similarity=0.162 Sum_probs=98.9
Q ss_pred HHHHHHhcCCCHHHHHHHHHHHHHhhcCCCC--------chhhHhcCChHHHHHhhcCCC----hhHHHHHHHHHHhccC
Q 005044 336 RPLIEMLQSPDVQLREMSAFALGRLAQDMHN--------QAGIAHNGGLVPLLKLLDSKN----GSLQHNAAFALYGLAD 403 (717)
Q Consensus 336 ~~L~~~l~~~~~~v~~~a~~~L~~l~~~~~~--------~~~l~~~~~l~~L~~ll~~~~----~~v~~~a~~~L~~l~~ 403 (717)
+.+++-+.+. ...+.+...|..|+..+.+ +-.+.-...+|.++..+.+++ ......++..|..++.
T Consensus 67 ~Ll~KGL~Ss--~t~e~tl~lL~~L~~~~~~~lig~~~~rll~~~la~LP~ll~~~d~~~~i~~~~~~~~~A~~La~~a~ 144 (262)
T PF14225_consen 67 PLLLKGLRSS--STYELTLRLLSRLTPLPDDPLIGDSQSRLLFLLLALLPRLLHAFDDPNPIQPDQECIEIAEALAQVAE 144 (262)
T ss_pred HHHhCccCCC--CcHHHHHHHHHHHhcCCCccccCCCCccHHHHHHHHHHHHHHHhcccccccccHHHHHHHHHHHHHHH
Confidence 3344444443 3445567777777753322 222222344666666666555 2344566677887774
Q ss_pred C--CcchHHHHHhcCccccccchhHHhhhHHHHHHHHHHHHHH----hhhchHHHHHHHHhhcchhHHHHHHHHHHhccC
Q 005044 404 N--EDNVADFIRVGGVQKLQDGEFIVQATKDCVAKTLKRLEEK----IHGRVLNHLLYLMRVAEKGVQRRVALALAHLCS 477 (717)
Q Consensus 404 ~--~~~~~~l~~~~~i~~L~~~~~~~~~~~~~~~~~~~~l~~~----~~~~~~~~L~~ll~~~~~~v~~~a~~aL~~l~~ 477 (717)
. ..+...+... +.+. .+....+.+...++-+... ...+++..|+.+|..+.+.+|..++..|..+..
T Consensus 145 ~~~~~~La~il~~-----ya~~--~fr~~~dfl~~v~~~l~~~f~P~~~~~~l~~Ll~lL~n~~~w~~~~~L~iL~~ll~ 217 (262)
T PF14225_consen 145 AQGLPNLARILSS-----YAKG--RFRDKDDFLSQVVSYLREAFFPDHEFQILTFLLGLLENGPPWLRRKTLQILKVLLP 217 (262)
T ss_pred hCCCccHHHHHHH-----HHhc--CCCCHHHHHHHHHHHHHHHhCchhHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHhc
Confidence 3 2222222221 1111 1122333344444444443 356788889999999999999999999999987
Q ss_pred CCCCceeeecCCCHHHHHHHhcCCCchhhhhhHHHHHHhhh
Q 005044 478 PDDQRTIFIDGGGLELLLGLLGSTNPKQQLDGAVALFKLAN 518 (717)
Q Consensus 478 ~~~~~~~~~~~~~l~~L~~ll~~~~~~v~~~a~~~l~~L~~ 518 (717)
..+.++. ...+.+.+|.++++.+... +|..+|-+...
T Consensus 218 ~~d~~~~-~~~dlispllrlL~t~~~~---eAL~VLd~~v~ 254 (262)
T PF14225_consen 218 HVDMRSP-HGADLISPLLRLLQTDLWM---EALEVLDEIVT 254 (262)
T ss_pred cccCCCC-cchHHHHHHHHHhCCccHH---HHHHHHHHHHh
Confidence 7664433 5667899999999876544 56666655543
No 278
>PF01347 Vitellogenin_N: Lipoprotein amino terminal region; InterPro: IPR001747 This entry represents a conserved region found in several lipid transport proteins, including vitellogenin, microsomal triglyceride transfer protein and apolipoprotein B-100 []. Vitellinogen precursors provide the major egg yolk proteins that are a source of nutrients during early development of oviparous vertebrates and invertebrates. Vitellinogen precursors are multi-domain apolipoproteins that are cleaved into distinct yolk proteins. Different vitellinogen precursors exist, which are composed of variable combinations of yolk protein components; however, the cleavage sites are conserved. In vertebrates, a complete vitellinogen is composed of an N-terminal signal peptide for export, followed by four regions that can be cleaved into yolk proteins: lipovitellin-1, phosvitin, lipovitellin-2, and a von Willebrand factor type D domain (YGP40) [, ]. Microsomal triglyceride transfer protein (MTTP) is an endoplasmic reticulum lipid transfer protein involved in the biosynthesis and lipid loading of apolipoprotein B. MTTP is also involved in the late stage of CD1d trafficking in the lysosomal compartment, CD1d being the MHC I-like lipid antigen presenting molecule []. Apolipoprotein B can exist in two forms: B-100 and B-48. Apoliporotein B-100 is present on several lipoproteins, including very low-density lipoproteins (VLDL), intermediate density lipoproteins (IDL) and low density lipoproteins (LDL), and can assemble VLDL particles in the liver []. Apolipoprotein B-100 has been linked to the development of atherosclerosis.; GO: 0005319 lipid transporter activity, 0006869 lipid transport; PDB: 1LSH_A.
Probab=85.14 E-value=7.5 Score=43.74 Aligned_cols=106 Identities=21% Similarity=0.136 Sum_probs=53.3
Q ss_pred ChHHHHHhhccCChHHHHHHHHHHHHHhcCChhhHHHHHhcCChHHHHHHhcC----CCHHHHHHHHHHHHHhhc----C
Q 005044 292 ALQPVIGLLSSCCSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQS----PDVQLREMSAFALGRLAQ----D 363 (717)
Q Consensus 292 ~l~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~l~~~~~l~~L~~~l~~----~~~~v~~~a~~~L~~l~~----~ 363 (717)
.+..+.+++....... ..+...+..+......-- ...+..+..+++. .++.++..|+.+++.+.. .
T Consensus 396 av~~i~~~I~~~~~~~-~ea~~~l~~l~~~~~~Pt-----~e~l~~l~~L~~~~~~~~~~~l~~ta~L~~~~lv~~~c~~ 469 (618)
T PF01347_consen 396 AVKFIKDLIKSKKLTD-DEAAQLLASLPFHVRRPT-----EELLKELFELAKSPKVKNSPYLRETALLSLGSLVHKYCVN 469 (618)
T ss_dssp HHHHHHHHHHTT-S-H-HHHHHHHHHHHHT----------HHHHHHHHHHHT-HHHHT-HHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHcCCCCH-HHHHHHHHHHHhhcCCCC-----HHHHHHHHHHHhCccccCChhHHHHHHHHHHHHhCceeec
Confidence 3566677777644322 224445555432221111 1234556666654 466788888878877763 2
Q ss_pred C------CCchhhHhcCChHHHHHhh----cCCChhHHHHHHHHHHhccC
Q 005044 364 M------HNQAGIAHNGGLVPLLKLL----DSKNGSLQHNAAFALYGLAD 403 (717)
Q Consensus 364 ~------~~~~~l~~~~~l~~L~~ll----~~~~~~v~~~a~~~L~~l~~ 403 (717)
. ...........++.+.+.+ ...+..-+..++.+|+|+..
T Consensus 470 ~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~LkaLgN~g~ 519 (618)
T PF01347_consen 470 SDSAEFCDPCSRCIIEKYVPYLEQELKEAVSRGDEEEKIVYLKALGNLGH 519 (618)
T ss_dssp -----------SS--GGGTHHHHHHHHHHHHTT-HHHHHHHHHHHHHHT-
T ss_pred ccccccccccchhhHHHHHHHHHHHHHHHhhccCHHHHHHHHHHhhccCC
Confidence 1 1112233334455555555 34566778889999999864
No 279
>PF01347 Vitellogenin_N: Lipoprotein amino terminal region; InterPro: IPR001747 This entry represents a conserved region found in several lipid transport proteins, including vitellogenin, microsomal triglyceride transfer protein and apolipoprotein B-100 []. Vitellinogen precursors provide the major egg yolk proteins that are a source of nutrients during early development of oviparous vertebrates and invertebrates. Vitellinogen precursors are multi-domain apolipoproteins that are cleaved into distinct yolk proteins. Different vitellinogen precursors exist, which are composed of variable combinations of yolk protein components; however, the cleavage sites are conserved. In vertebrates, a complete vitellinogen is composed of an N-terminal signal peptide for export, followed by four regions that can be cleaved into yolk proteins: lipovitellin-1, phosvitin, lipovitellin-2, and a von Willebrand factor type D domain (YGP40) [, ]. Microsomal triglyceride transfer protein (MTTP) is an endoplasmic reticulum lipid transfer protein involved in the biosynthesis and lipid loading of apolipoprotein B. MTTP is also involved in the late stage of CD1d trafficking in the lysosomal compartment, CD1d being the MHC I-like lipid antigen presenting molecule []. Apolipoprotein B can exist in two forms: B-100 and B-48. Apoliporotein B-100 is present on several lipoproteins, including very low-density lipoproteins (VLDL), intermediate density lipoproteins (IDL) and low density lipoproteins (LDL), and can assemble VLDL particles in the liver []. Apolipoprotein B-100 has been linked to the development of atherosclerosis.; GO: 0005319 lipid transporter activity, 0006869 lipid transport; PDB: 1LSH_A.
Probab=85.06 E-value=38 Score=38.10 Aligned_cols=199 Identities=18% Similarity=0.204 Sum_probs=106.3
Q ss_pred ChHHHHHhhcCCCCCccccCCCccchHHHhHHHHHHHHhc---CChhhHHHHHhCCChHHHHHHHhccccCCCccchhHH
Q 005044 105 AVPALVKHLQAPPTSEADRNLKPFEHEVEKGSAFALGLLA---VKPEHQQLIVDNGALSHLVNLLKRHMDSNCSRAVNSV 181 (717)
Q Consensus 105 ~i~~L~~lL~~~~~~~~~~~~~~~~~~v~~~a~~~L~~l~---~~~~~~~~~~~~~~i~~L~~lL~~~~~~~~~~~~~~~ 181 (717)
++..+.+++..... . -..+...|..+. ..|.. ..+..+..+++....... ..+
T Consensus 396 av~~i~~~I~~~~~------------~-~~ea~~~l~~l~~~~~~Pt~-------e~l~~l~~L~~~~~~~~~----~~l 451 (618)
T PF01347_consen 396 AVKFIKDLIKSKKL------------T-DDEAAQLLASLPFHVRRPTE-------ELLKELFELAKSPKVKNS----PYL 451 (618)
T ss_dssp HHHHHHHHHHTT-S--------------HHHHHHHHHHHHHT-----H-------HHHHHHHHHHT-HHHHT-----HHH
T ss_pred HHHHHHHHHHcCCC------------C-HHHHHHHHHHHHhhcCCCCH-------HHHHHHHHHHhCccccCC----hhH
Confidence 45667777776443 1 123555555555 12221 234556666654321110 045
Q ss_pred HHHHHHHHHHHhhcCchh---------hhHHHhcCCcHHHHHhhc----CCCHHHHHHHHHHHHHhhccChhhHHHHHhc
Q 005044 182 IRRAADAITNLAHENSSI---------KTRVRMEGGIPPLVELLE----FTDTKVQRAAAGALRTLAFKNDENKNQIVEC 248 (717)
Q Consensus 182 ~~~a~~~L~~l~~~~~~~---------~~~~~~~~~i~~L~~ll~----~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~ 248 (717)
...|+-.++.+....-.. .........++.+...+. ..+..-+..++.+|+|+.. +
T Consensus 452 ~~ta~L~~~~lv~~~c~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~LkaLgN~g~--~--------- 520 (618)
T PF01347_consen 452 RETALLSLGSLVHKYCVNSDSAEFCDPCSRCIIEKYVPYLEQELKEAVSRGDEEEKIVYLKALGNLGH--P--------- 520 (618)
T ss_dssp HHHHHHHHHHHHHHHHTT-----------SS--GGGTHHHHHHHHHHHHTT-HHHHHHHHHHHHHHT---G---------
T ss_pred HHHHHHHHHHHhCceeecccccccccccchhhHHHHHHHHHHHHHHHhhccCHHHHHHHHHHhhccCC--c---------
Confidence 555665655555321111 111222345566666554 3567888899999999974 2
Q ss_pred CCHHHHHHHHcCC---CHHHHHHHHHHHHHhhcCChHHHHHHHHcCChHHHHHhhccC--ChHHHHHHHHHHHHHhcCCh
Q 005044 249 NALPTLILMLRSE---DSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLSSC--CSESQREAALLLGQFAATDS 323 (717)
Q Consensus 249 g~i~~L~~ll~~~---~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~l~~L~~ll~~~--~~~~~~~a~~~L~~l~~~~~ 323 (717)
..++.+...+.+. +..+|..|+++|..++...+.. +.+.++.++.+. +.++|..|..+|... +|
T Consensus 521 ~~i~~l~~~i~~~~~~~~~~R~~Ai~Alr~~~~~~~~~--------v~~~l~~I~~n~~e~~EvRiaA~~~lm~~---~P 589 (618)
T PF01347_consen 521 ESIPVLLPYIEGKEEVPHFIRVAAIQALRRLAKHCPEK--------VREILLPIFMNTTEDPEVRIAAYLILMRC---NP 589 (618)
T ss_dssp GGHHHHHTTSTTSS-S-HHHHHHHHHTTTTGGGT-HHH--------HHHHHHHHHH-TTS-HHHHHHHHHHHHHT-----
T ss_pred hhhHHHHhHhhhccccchHHHHHHHHHHHHHhhcCcHH--------HHHHHHHHhcCCCCChhHHHHHHHHHHhc---CC
Confidence 3577788877766 6789999999999886655432 245677777653 467888877766653 22
Q ss_pred hhHHHHHhcCChHHHHHHhcC-CCHHHHHHHHHH
Q 005044 324 DCKVHIVQRGAVRPLIEMLQS-PDVQLREMSAFA 356 (717)
Q Consensus 324 ~~~~~l~~~~~l~~L~~~l~~-~~~~v~~~a~~~ 356 (717)
.. ..+..+...+.. ++.+|.......
T Consensus 590 ~~-------~~l~~i~~~l~~E~~~QV~sfv~S~ 616 (618)
T PF01347_consen 590 SP-------SVLQRIAQSLWNEPSNQVASFVYSH 616 (618)
T ss_dssp -H-------HHHHHHHHHHTT-S-HHHHHHHHHH
T ss_pred CH-------HHHHHHHHHHhhCchHHHHHHHHHh
Confidence 22 134566677754 566776554443
No 280
>KOG1992 consensus Nuclear export receptor CSE1/CAS (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=84.89 E-value=72 Score=35.79 Aligned_cols=191 Identities=17% Similarity=0.151 Sum_probs=92.5
Q ss_pred HHHHHHHHHHHhhcChhhHHHHHhCCChHHHHHhhcCCCCCccc---------------cCCCccch-HHHhHHHHHHHH
Q 005044 79 AAKRATHVLAELAKNEEVVNWIVEGGAVPALVKHLQAPPTSEAD---------------RNLKPFEH-EVEKGSAFALGL 142 (717)
Q Consensus 79 ~~~~a~~~L~~l~~~~~~~~~~~~~g~i~~L~~lL~~~~~~~~~---------------~~~~~~~~-~v~~~a~~~L~~ 142 (717)
..-.|+..|.+.++.+.+...+...+++..+.+...-++-.-.. ++..-.|- .-|+.|+..+..
T Consensus 309 Lvs~Al~FLt~V~~r~~y~~~F~~~~vl~~i~e~VvlpN~~lR~eDeElFED~pleYiRRDlEGsDvdTRRR~a~dlvrg 388 (960)
T KOG1992|consen 309 LVSKALQFLTSVSRRPHYAELFEGENVLAQICEKVVLPNLILREEDEELFEDNPLEYIRRDLEGSDVDTRRRAAIDLVRG 388 (960)
T ss_pred HHHHHHHHHHHHHhhhhhHhhhcchHHHHHHHHhhcccccccchhhHHHhccCHHHHHHHhcccCCcchhHHHHHHHHHH
Confidence 45667777777777666655555555555444432211100000 00000111 346678888888
Q ss_pred hcCChhhHHHHHhCCChHHHHHHHhccccCCCccchhHHHHHHHHHHHHHhhcCchhhhHHHhc----CCcH----HHHH
Q 005044 143 LAVKPEHQQLIVDNGALSHLVNLLKRHMDSNCSRAVNSVIRRAADAITNLAHENSSIKTRVRME----GGIP----PLVE 214 (717)
Q Consensus 143 l~~~~~~~~~~~~~~~i~~L~~lL~~~~~~~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~----~~i~----~L~~ 214 (717)
|+..-+.+..-+-.+.+..+++--..+. ...|.-...+...+..++......+.-+... +.+. .+..
T Consensus 389 L~~~fe~~vt~v~~~~v~~~l~~y~~nP-----S~nWk~kd~aiyL~talaik~~t~~~Gvtstn~lvdv~~Ff~~~ilp 463 (960)
T KOG1992|consen 389 LCKNFEGQVTGVFSSEVQRLLDQYSKNP-----SGNWKKKDRAIYLVTALAIKGQTAKHGVTSTNELVDVVDFFANQILP 463 (960)
T ss_pred HHHHhcchhHHHHHHHHHHHHHHhccCC-----CccccccchhhhhhHHHHhhcchhhcceeeccccccHHHHHHHHhhH
Confidence 8843333322222222333332222221 1335666777777777776433222111111 1111 1111
Q ss_pred hhcC----CCHHHHHHHHHHHHHhhccChhhHHHHHhcCCHHHHHHHHcCCCHHHHHHHHHHHHHhhc
Q 005044 215 LLEF----TDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSEDSAIHYEAVGVIGNLVH 278 (717)
Q Consensus 215 ll~~----~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~v~~~a~~~L~~l~~ 278 (717)
-|.+ ..|-++..+++.+...= +.-....++. .+|.++++|..+..-|-..|+.++-.+..
T Consensus 464 ~L~s~~vn~~pilka~aIKy~~~FR--~ql~~~~lm~--~~p~li~~L~a~s~vvhsYAA~aiEkil~ 527 (960)
T KOG1992|consen 464 DLLSPNVNEFPILKADAIKYIYTFR--NQLGKEHLMA--LLPRLIRFLEAESRVVHSYAAIAIEKLLT 527 (960)
T ss_pred HhccCccccccchhhcccceeeeec--ccCChHHHHH--HHHHHHHhccCcchHHHHHHHHHHHhccc
Confidence 1222 23445555544333221 2223333333 58999999999999999999999888743
No 281
>smart00638 LPD_N Lipoprotein N-terminal Domain.
Probab=84.56 E-value=32 Score=38.28 Aligned_cols=144 Identities=17% Similarity=0.115 Sum_probs=71.8
Q ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHhhc--CChHHHHHHHHcC---ChHHHHHhhccCChHH--HHHHHHHHHHHhcCCh
Q 005044 251 LPTLILMLRSEDSAIHYEAVGVIGNLVH--SSPNIKKEVLAAG---ALQPVIGLLSSCCSES--QREAALLLGQFAATDS 323 (717)
Q Consensus 251 i~~L~~ll~~~~~~v~~~a~~~L~~l~~--~~~~~~~~~~~~g---~l~~L~~ll~~~~~~~--~~~a~~~L~~l~~~~~ 323 (717)
+-.|+++|+.-+.+-......-+.. .. ...-..+.+...| .+..+.+++.+..... ...+...+...... +
T Consensus 313 f~~lv~~lR~~~~e~l~~l~~~~~~-~~~~~r~~~~Dal~~~GT~~a~~~i~~~i~~~~~~~~ea~~~~~~~~~~~~~-P 390 (574)
T smart00638 313 FLRLVRLLRTLSEEQLEQLWRQLYE-KKKKARRIFLDAVAQAGTPPALKFIKQWIKNKKITPLEAAQLLAVLPHTARY-P 390 (574)
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHHh-CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhhhc-C
Confidence 4556667766555544444444432 10 0011223344444 4566666776654222 22222222222111 1
Q ss_pred hhHHHHHhcCChHHHHHHhcC----CCHHHHHHHHHHHHHhhc----CCCCchhhHhcCChHHHHHhhc----CCChhHH
Q 005044 324 DCKVHIVQRGAVRPLIEMLQS----PDVQLREMSAFALGRLAQ----DMHNQAGIAHNGGLVPLLKLLD----SKNGSLQ 391 (717)
Q Consensus 324 ~~~~~l~~~~~l~~L~~~l~~----~~~~v~~~a~~~L~~l~~----~~~~~~~l~~~~~l~~L~~ll~----~~~~~v~ 391 (717)
. ...+..+..++++ ..+.++..+.-+++++.. +...+...+....++.+.+.+. ..+...+
T Consensus 391 t-------~~~l~~l~~l~~~~~~~~~~~l~~sa~l~~~~lv~~~c~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~ 463 (574)
T smart00638 391 T-------EEILKALFELAESPEVQKQPYLRESALLAYGSLVRRYCVNTPSCPDFVLEELLKYLHELLQQAVSKGDEEEI 463 (574)
T ss_pred C-------HHHHHHHHHHhcCccccccHHHHHHHHHHHHHHHHHHhcCCCCCChhhHHHHHHHHHHHHHHHHhcCCchhe
Confidence 1 1235667777765 356788888878877774 2222212223345555555442 3455566
Q ss_pred HHHHHHHHhccC
Q 005044 392 HNAAFALYGLAD 403 (717)
Q Consensus 392 ~~a~~~L~~l~~ 403 (717)
...+.+|+|+..
T Consensus 464 ~~~LkaLGN~g~ 475 (574)
T smart00638 464 QLYLKALGNAGH 475 (574)
T ss_pred eeHHHhhhccCC
Confidence 778888888864
No 282
>PF10363 DUF2435: Protein of unknown function (DUF2435)
Probab=84.12 E-value=1.8 Score=34.18 Aligned_cols=70 Identities=19% Similarity=0.146 Sum_probs=56.5
Q ss_pred hHHHHHHHHhhcchhHHHHHHHHHHhccCCCCCceeeecCCCHHHHHHHhcCCCchhhhhhHHHHHHhhhc
Q 005044 449 VLNHLLYLMRVAEKGVQRRVALALAHLCSPDDQRTIFIDGGGLELLLGLLGSTNPKQQLDGAVALFKLANK 519 (717)
Q Consensus 449 ~~~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~~~~~~l~~L~~ll~~~~~~v~~~a~~~l~~L~~~ 519 (717)
.+...+..+.++.+.+|..++..|.++....+ .......+++..+...++++++-+--.|..++..|+..
T Consensus 4 ~~~~al~~L~dp~~PvRa~gL~~L~~Li~~~~-~~~~~~~~il~l~l~~L~d~DsyVYL~aI~~L~~La~~ 73 (92)
T PF10363_consen 4 TLQEALSDLNDPLPPVRAHGLVLLRKLIESKS-EPVIDIPKILDLFLSQLKDEDSYVYLNAIKGLAALADR 73 (92)
T ss_pred HHHHHHHHccCCCcchHHHHHHHHHHHHHcCC-cchhhHHHHHHHHHHHcCCCCchHHHHHHHHHHHHHHH
Confidence 34556777889999999999999999987766 22223346678888999999999999999999999875
No 283
>PF13251 DUF4042: Domain of unknown function (DUF4042)
Probab=83.91 E-value=28 Score=31.64 Aligned_cols=156 Identities=18% Similarity=0.196 Sum_probs=91.8
Q ss_pred HHHHHHHHHHHhhcCCCCch------hhH------hcCChHHHHH-hhcCCChhHHHHHHHHHHhccCCCcchHHHHHhc
Q 005044 349 LREMSAFALGRLAQDMHNQA------GIA------HNGGLVPLLK-LLDSKNGSLQHNAAFALYGLADNEDNVADFIRVG 415 (717)
Q Consensus 349 v~~~a~~~L~~l~~~~~~~~------~l~------~~~~l~~L~~-ll~~~~~~v~~~a~~~L~~l~~~~~~~~~l~~~~ 415 (717)
+|..|+.+|..+++..+.+. .+. ..+.-+.|+. ++.+.++.+|..|+.++..|-.+. +..+....
T Consensus 2 vR~~Al~~L~al~k~~~~r~l~~yW~~llP~~~~~~~~~~~sLlt~il~Dp~~kvR~aA~~~l~~lL~gs--k~~L~~Ae 79 (182)
T PF13251_consen 2 VRQAALQCLQALAKSTDKRSLFGYWPALLPDSVLQGRPATPSLLTCILKDPSPKVRAAAASALAALLEGS--KPFLAQAE 79 (182)
T ss_pred hhHHHHHHHHHHHHhcCCceeHhhHHHHCCCCCCcCCCCCcchhHHHHcCCchhHHHHHHHHHHHHHHcc--HHHHHHHH
Confidence 67778888888886522221 111 1223334444 457889999999999999998654 33333322
Q ss_pred CccccccchhHHhhhHHHHHHHHHHHHHHhhhchHHHHHHHHhhc-chhHHHHHHHHHHhccCCCCCceeeecCCCHHH-
Q 005044 416 GVQKLQDGEFIVQATKDCVAKTLKRLEEKIHGRVLNHLLYLMRVA-EKGVQRRVALALAHLCSPDDQRTIFIDGGGLEL- 493 (717)
Q Consensus 416 ~i~~L~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~L~~ll~~~-~~~v~~~a~~aL~~l~~~~~~~~~~~~~~~l~~- 493 (717)
--+ -....|... ..-+...+.. +-..|+..+..+ ++.+....+++|..+.......+. ..|.++.
T Consensus 80 ~~~-~~~~sFtsl--S~tLa~~i~~--------lH~~Ll~~L~~E~~~~~l~q~lK~la~Lv~~tPY~rL--~~~ll~~~ 146 (182)
T PF13251_consen 80 ESK-GPSGSFTSL--SSTLASMIME--------LHRGLLLALQAEKSPPVLTQLLKCLAVLVQATPYHRL--PPGLLTEV 146 (182)
T ss_pred hcC-CCCCCcccH--HHHHHHHHHH--------HHHHHHHHHhcccccHHHHHHHHHHHHHHccCChhhc--CHhHHHHH
Confidence 111 001112111 1111111111 122355666555 677888899999999877664332 3455554
Q ss_pred ---HHHHhcCCCchhhhhhHHHHHHhhhc
Q 005044 494 ---LLGLLGSTNPKQQLDGAVALFKLANK 519 (717)
Q Consensus 494 ---L~~ll~~~~~~v~~~a~~~l~~L~~~ 519 (717)
+..++.+.|++++..+..++..+..-
T Consensus 147 v~~v~~~l~~~d~~v~v~~l~~~~~l~s~ 175 (182)
T PF13251_consen 147 VTQVRPLLRHRDPNVRVAALSCLGALLSV 175 (182)
T ss_pred HHHHHHHHhcCCCcHHHHHHHHHHHHHcC
Confidence 44677789999999999988888764
No 284
>PF08324 PUL: PUL domain; InterPro: IPR013535 The PUL (after PLAP, UFD3 and lub1) domain is a predicted predominantly alpha helical globular domain found in eukaryotes. It is found in association with either WD repeats (see PDOC00574 from PROSITEDOC) and the PFU domain (see PDOC51394 from PROSITEDOC) or PPPDE and thioredoxin (see PDOC00172 from PROSITEDOC) domains. The PUL domain is a protein-protein interaction domain [, ]. Some proteins known to contain a PUL domain are listed below: Saccharomyces cerevisiae DOA1 (UFD3, ZZZ4), involved in ubiquitin conjugation pathway. DOA1 participates in the regulation of the ubiquitin conjugation pathway involving CDC48 by hindering multiubiquitination of substrates at the CDC48 chaperone. Schizosaccharomyces pombe ubiquitin homeostasis protein lub1, acts as a negative regulator of vacuole-dependent ubiquitin degradation. Mammalian phospholipase A-2-activating protein (PLA2P, PLAA), the homologue of DOA1. PLA2P plays an important role in the regulation of specific inflammatory disease processes. ; PDB: 3EBB_A 3L3F_X 3GAE_B 3PST_A 3PSP_A.
Probab=83.88 E-value=12 Score=36.68 Aligned_cols=147 Identities=20% Similarity=0.189 Sum_probs=84.4
Q ss_pred HHhHHHHHHHHhcCChhhHHHHHhCC--ChHHHHHHHhccccCCCccchhHHHHHHHHHHHHHhhcCchhhhHHHhc-C-
Q 005044 132 VEKGSAFALGLLAVKPEHQQLIVDNG--ALSHLVNLLKRHMDSNCSRAVNSVIRRAADAITNLAHENSSIKTRVRME-G- 207 (717)
Q Consensus 132 v~~~a~~~L~~l~~~~~~~~~~~~~~--~i~~L~~lL~~~~~~~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~-~- 207 (717)
-+--++..+.-++-++.....+...+ ....+..++....... ....+..+++++.|+.. ++..+..+... +
T Consensus 79 ~~fP~lDLlRl~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~----~~~~~ml~lR~l~NlF~-~~~~~~~~~~~~~~ 153 (268)
T PF08324_consen 79 SRFPALDLLRLAALHPPASDLLASEDSGIADLLSTLISSGSSSS----PPANQMLALRLLANLFS-HPPGRQLLLSHFDS 153 (268)
T ss_dssp C-HHHHHHHHHHCCCHCHHHHHHSTTTH-HHHHHHHHHCCTTTS----SHHHHHHHHHHHHHHTT-SCCCHHHHHCTHHT
T ss_pred cchhHHhHHHHHHhCccHHHHHhccccchHHHHHHHHHhccCCC----cHHHHHHHHHHHHHhhC-CCccHHHHHhcccc
Confidence 35566666666666666555544333 2455555555443221 12778889999999887 44455554432 2
Q ss_pred CcHHHHHhhcCC----CHHHHHHHHHHHHHhhccChhhH-HHHHhcCCHHHHHHH-HcC-CCHHHHHHHHHHHHHhhcCC
Q 005044 208 GIPPLVELLEFT----DTKVQRAAAGALRTLAFKNDENK-NQIVECNALPTLILM-LRS-EDSAIHYEAVGVIGNLVHSS 280 (717)
Q Consensus 208 ~i~~L~~ll~~~----~~~v~~~a~~~L~~L~~~~~~~~-~~~~~~g~i~~L~~l-l~~-~~~~v~~~a~~~L~~l~~~~ 280 (717)
.+...+..+... +..++..++..+.|++....... ..-....++..+.+. ... .++++...++-+|+++....
T Consensus 154 ~i~~~~~~~~~~~~~~~kn~~~A~ATl~~Nlsv~~~~~~~~~~~~~~ll~~i~~~~~~~~~d~Ea~~R~LvAlGtL~~~~ 233 (268)
T PF08324_consen 154 SILELLSSLLSSLLDSNKNVRIALATLLLNLSVLLHKNRSDEEWQSELLSSIIEVLSREESDEEALYRLLVALGTLLSSS 233 (268)
T ss_dssp CHHHHCHCCCTTS-HHHHHHHHHHHHHHHHHHHHHHHCTS-CCHHHHHHHHHHHHCHCCHTSHHHHHHHHHHHHHHHCCS
T ss_pred hHHHHHHHHhhccccccHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHhccccCCHHHHHHHHHHHHHHhccC
Confidence 233333333333 68899999999999975211111 000011134555553 333 68999999999999998665
Q ss_pred hHH
Q 005044 281 PNI 283 (717)
Q Consensus 281 ~~~ 283 (717)
+..
T Consensus 234 ~~~ 236 (268)
T PF08324_consen 234 DSA 236 (268)
T ss_dssp HHH
T ss_pred hhH
Confidence 544
No 285
>PF11707 Npa1: Ribosome 60S biogenesis N-terminal; InterPro: IPR021714 Npa1p is required for ribosome biogenesis and operates in the same functional environment as Rsa3p and Dbp6p during early maturation of 60S ribosomal subunits []. The protein partners of Npa1p include eight putative helicases as well as the novel Npa2p factor. Npa1p can also associate with a subset of H/ACA and C/D small nucleolar RNPs (snoRNPs) involved in the chemical modification of residues in the vicinity of the peptidyl transferase centre []. The protein has also been referred to as Urb1, and this domain at the N-terminal is one of several conserved regions along the length.
Probab=83.51 E-value=55 Score=33.30 Aligned_cols=159 Identities=13% Similarity=0.141 Sum_probs=114.2
Q ss_pred cHHHHHhhcCCCHHHHHHHHHHHHHhhc-cChhhHHHHHhc--CCHHHHHHHHcCC-----C--------HHHHHHHHHH
Q 005044 209 IPPLVELLEFTDTKVQRAAAGALRTLAF-KNDENKNQIVEC--NALPTLILMLRSE-----D--------SAIHYEAVGV 272 (717)
Q Consensus 209 i~~L~~ll~~~~~~v~~~a~~~L~~L~~-~~~~~~~~~~~~--g~i~~L~~ll~~~-----~--------~~v~~~a~~~ 272 (717)
+..+-+.|......+...++..|..++. +.......+... --.+.+.+++... + +++|...+..
T Consensus 58 ~k~lyr~L~~~~~~~~~~~LrLL~~iv~f~~g~~a~~v~~~fd~~~~~l~kll~~~~~~~~~~~~~~~~~~siR~~fI~F 137 (330)
T PF11707_consen 58 LKLLYRSLSSSKPSLTNPALRLLTAIVSFDGGALAREVLRSFDFSLKSLPKLLTPRKKEKEKDSESSKSKPSIRTNFIRF 137 (330)
T ss_pred HHHHHHHhCcCcHHHHHHHHHHHHHHHccCCHHHHHHHHHhcCCchhhHHHHhccccccccccccccccCcCHHHHHHHH
Confidence 5677778888888888999999999998 555666666543 2245666666421 1 2889888887
Q ss_pred HHHhhc-CChHHHHHHHH-cCChHHHHHhhccCChHHHHHHHHHHHHHhcCCh----hhHHHHHhcCChHHHHHHhcCCC
Q 005044 273 IGNLVH-SSPNIKKEVLA-AGALQPVIGLLSSCCSESQREAALLLGQFAATDS----DCKVHIVQRGAVRPLIEMLQSPD 346 (717)
Q Consensus 273 L~~l~~-~~~~~~~~~~~-~g~l~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~----~~~~~l~~~~~l~~L~~~l~~~~ 346 (717)
+..+.. .++..+..++. .+.+..+.+-+..++.++....+.++..-.-.++ ..+..+.+...+..|..+....+
T Consensus 138 ~Lsfl~~~~~~~~~~lL~~~~~~~~l~k~l~~D~~~~v~~iL~~l~~~Vl~~~~v~r~~K~~~fn~~~L~~l~~Ly~~~~ 217 (330)
T PF11707_consen 138 WLSFLSSGDPELKRDLLSQKKLMSALFKGLRKDPPETVILILETLKDKVLKDSSVSRSTKCKLFNEWTLSQLASLYSRDG 217 (330)
T ss_pred HHHHHccCCHHHHHHHHHcCchHHHHHhcccCCCHHHHHHHHHHHHHHhccCCCCChhhhhhhcCHHHHHHHHHHhcccC
Confidence 777654 45556666665 5678888888888888888888888875322332 33456777788889999877766
Q ss_pred H----HHHHHHHHHHHHhhcCCCCc
Q 005044 347 V----QLREMSAFALGRLAQDMHNQ 367 (717)
Q Consensus 347 ~----~v~~~a~~~L~~l~~~~~~~ 367 (717)
+ .++..+-..|..+|.++...
T Consensus 218 ~~~~~~~~~~vh~fL~~lcT~p~~G 242 (330)
T PF11707_consen 218 EDEKSSVADLVHEFLLALCTDPKHG 242 (330)
T ss_pred CcccchHHHHHHHHHHHHhcCCCcc
Confidence 6 88899999999999766543
No 286
>PF08167 RIX1: rRNA processing/ribosome biogenesis
Probab=83.12 E-value=4.3 Score=36.36 Aligned_cols=115 Identities=22% Similarity=0.170 Sum_probs=71.8
Q ss_pred ChHHHHHHhcCCCHHHHHHHHHHHHHhhcCCCCchhhHhcC--ChHHHHHhhcC-CChhHHHHHHHHHHhccCCCcchHH
Q 005044 334 AVRPLIEMLQSPDVQLREMSAFALGRLAQDMHNQAGIAHNG--GLVPLLKLLDS-KNGSLQHNAAFALYGLADNEDNVAD 410 (717)
Q Consensus 334 ~l~~L~~~l~~~~~~v~~~a~~~L~~l~~~~~~~~~l~~~~--~l~~L~~ll~~-~~~~v~~~a~~~L~~l~~~~~~~~~ 410 (717)
....+.++++++++.-|-.++..+.-.+..... ..+.+.+ .+..++.++.. ++..+.+.++.++..|.....+.+.
T Consensus 26 l~~ri~~LL~s~~~~~rw~G~~Ll~~~~~~~~~-e~l~~~~~~W~~~Ll~~L~~~~~~~~~~~ai~~L~~l~~~~~~~p~ 104 (165)
T PF08167_consen 26 LVTRINSLLQSKSAYSRWAGLCLLKVTVEQCSW-EILLSHGSQWLRALLSILEKPDPPSVLEAAIITLTRLFDLIRGKPT 104 (165)
T ss_pred HHHHHHHHhCCCChhhHHHHHHHHHHHHHHhhH-HHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhcCCCc
Confidence 456788899999999998888888888775422 2232332 35557777765 4566788888888888654444444
Q ss_pred HHHhcCccccccchhHHhhhHHHHHHHHHHHHHHhhhchHHHHHHHHhhcchhHHHHHHHHHHhccC
Q 005044 411 FIRVGGVQKLQDGEFIVQATKDCVAKTLKRLEEKIHGRVLNHLLYLMRVAEKGVQRRVALALAHLCS 477 (717)
Q Consensus 411 l~~~~~i~~L~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~L~~ll~~~~~~v~~~a~~aL~~l~~ 477 (717)
+.+....+.+. ++++.+++++++ ......++.+|..+..
T Consensus 105 l~Rei~tp~l~--------------------------~~i~~ll~l~~~--~~~~~~~l~~L~~ll~ 143 (165)
T PF08167_consen 105 LTREIATPNLP--------------------------KFIQSLLQLLQD--SSCPETALDALATLLP 143 (165)
T ss_pred hHHHHhhccHH--------------------------HHHHHHHHHHhc--cccHHHHHHHHHHHHH
Confidence 44433333211 255566666664 4555566666666643
No 287
>PF11864 DUF3384: Domain of unknown function (DUF3384); InterPro: IPR024584 This entry represents the N-terminal domain of tuberin which is functionally uncharacterised.
Probab=82.94 E-value=73 Score=34.28 Aligned_cols=71 Identities=18% Similarity=0.163 Sum_probs=48.9
Q ss_pred chHHHHHHHHhh------cchhHHHHHHHHHHhccCCC--CCceeeecCC--CHHHHHHHhcCCCchhhhhhHHHHHHhh
Q 005044 448 RVLNHLLYLMRV------AEKGVQRRVALALAHLCSPD--DQRTIFIDGG--GLELLLGLLGSTNPKQQLDGAVALFKLA 517 (717)
Q Consensus 448 ~~~~~L~~ll~~------~~~~v~~~a~~aL~~l~~~~--~~~~~~~~~~--~l~~L~~ll~~~~~~v~~~a~~~l~~L~ 517 (717)
.++..|..+|.. .+..+.+-|+..|..+..+. +....+--.- .++.|...++.+++.+-.+....+.++.
T Consensus 250 ~~i~~L~~iL~~~~~~~~~~~~~lRGAv~~l~~ll~~~~~~~~~~l~~~~~~vl~sl~~al~~~~~~v~~eIl~~i~~ll 329 (464)
T PF11864_consen 250 SAIRTLCDILRSPDPQNKRDINVLRGAVFFLRMLLWGSGEQGYPSLPFSPSSVLPSLLNALKSNSPRVDYEILLLINRLL 329 (464)
T ss_pred HHHHHHHHHHcccCccccccHHHHhhHHHHHHHHHhccccCCcceecccHHHHHHHHHHHHhCCCCeehHHHHHHHHHHH
Confidence 356677788832 24556667888888886655 2222222233 6788888899888888888888888888
Q ss_pred h
Q 005044 518 N 518 (717)
Q Consensus 518 ~ 518 (717)
.
T Consensus 330 ~ 330 (464)
T PF11864_consen 330 D 330 (464)
T ss_pred h
Confidence 3
No 288
>PF13251 DUF4042: Domain of unknown function (DUF4042)
Probab=82.79 E-value=20 Score=32.50 Aligned_cols=138 Identities=15% Similarity=0.193 Sum_probs=84.0
Q ss_pred HHHHHHHHHHHhhccChhhHHH------HH------hc-CCHHHHHHHHcCCCHHHHHHHHHHHHHhhcCChHHHHHHHH
Q 005044 223 VQRAAAGALRTLAFKNDENKNQ------IV------EC-NALPTLILMLRSEDSAIHYEAVGVIGNLVHSSPNIKKEVLA 289 (717)
Q Consensus 223 v~~~a~~~L~~L~~~~~~~~~~------~~------~~-g~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~ 289 (717)
+|..|+.+|..++...+ .+.. +. .. .-...+.-++.++++.+|..|+.++..+..+....-....+
T Consensus 2 vR~~Al~~L~al~k~~~-~r~l~~yW~~llP~~~~~~~~~~~sLlt~il~Dp~~kvR~aA~~~l~~lL~gsk~~L~~Ae~ 80 (182)
T PF13251_consen 2 VRQAALQCLQALAKSTD-KRSLFGYWPALLPDSVLQGRPATPSLLTCILKDPSPKVRAAAASALAALLEGSKPFLAQAEE 80 (182)
T ss_pred hhHHHHHHHHHHHHhcC-CceeHhhHHHHCCCCCCcCCCCCcchhHHHHcCCchhHHHHHHHHHHHHHHccHHHHHHHHh
Confidence 56777777777775311 1111 00 11 22334455677899999999999999998776543222221
Q ss_pred cC----Ch---------------HHHHHhhcc-CChHHHHHHHHHHHHHhcCChhhHHHHHhcCCh----HHHHHHhcCC
Q 005044 290 AG----AL---------------QPVIGLLSS-CCSESQREAALLLGQFAATDSDCKVHIVQRGAV----RPLIEMLQSP 345 (717)
Q Consensus 290 ~g----~l---------------~~L~~ll~~-~~~~~~~~a~~~L~~l~~~~~~~~~~l~~~~~l----~~L~~~l~~~ 345 (717)
.. .. ..|+..+.. .+..+....+.++..+....|..+. ..|++ ..+..++.+.
T Consensus 81 ~~~~~~sFtslS~tLa~~i~~lH~~Ll~~L~~E~~~~~l~q~lK~la~Lv~~tPY~rL---~~~ll~~~v~~v~~~l~~~ 157 (182)
T PF13251_consen 81 SKGPSGSFTSLSSTLASMIMELHRGLLLALQAEKSPPVLTQLLKCLAVLVQATPYHRL---PPGLLTEVVTQVRPLLRHR 157 (182)
T ss_pred cCCCCCCcccHHHHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHccCChhhc---CHhHHHHHHHHHHHHHhcC
Confidence 11 11 223333433 3456777888888888776665443 23444 4455556678
Q ss_pred CHHHHHHHHHHHHHhhcCC
Q 005044 346 DVQLREMSAFALGRLAQDM 364 (717)
Q Consensus 346 ~~~v~~~a~~~L~~l~~~~ 364 (717)
|+.++..++.+++.+....
T Consensus 158 d~~v~v~~l~~~~~l~s~~ 176 (182)
T PF13251_consen 158 DPNVRVAALSCLGALLSVQ 176 (182)
T ss_pred CCcHHHHHHHHHHHHHcCC
Confidence 9999999999999887643
No 289
>COG5656 SXM1 Importin, protein involved in nuclear import [Posttranslational modification, protein turnover, chaperones]
Probab=82.39 E-value=87 Score=34.79 Aligned_cols=121 Identities=12% Similarity=0.073 Sum_probs=76.0
Q ss_pred CCChHHHHHHHhccccCCCccchhHHHHHHHHHHHHHhh---cCchhhhHHHhcCCcHHHHHhhcCCCHHHHHHHHHHHH
Q 005044 156 NGALSHLVNLLKRHMDSNCSRAVNSVIRRAADAITNLAH---ENSSIKTRVRMEGGIPPLVELLEFTDTKVQRAAAGALR 232 (717)
Q Consensus 156 ~~~i~~L~~lL~~~~~~~~~~~~~~~~~~a~~~L~~l~~---~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~ 232 (717)
.|.++.+...|......+..-....-.+.|++.+.++.. .....+ -+.+.=+++.++..++++.--++..||..+.
T Consensus 407 qgiLsf~~sil~qsaa~psn~dnarq~egalr~lasi~s~itk~sp~a-n~me~fiv~hv~P~f~s~ygfL~Srace~is 485 (970)
T COG5656 407 QGILSFLLSILGQSAATPSNIDNARQAEGALRLLASIKSFITKMSPAA-NVMEYFIVNHVIPAFRSNYGFLKSRACEFIS 485 (970)
T ss_pred hhHHHHHHHHHhcccCCCCccccHHHHhhHHHHHHHHHHHhccCchHH-HHHHHHHHHHhhHhhcCcccchHHHHHHHHH
Confidence 478889999985543222110000233456666666654 223222 2333334566677778888889999999999
Q ss_pred HhhccChhhHHHHHhcCCHHHHHHHHcCCCHHHHHHHHHHHHHhhcCC
Q 005044 233 TLAFKNDENKNQIVECNALPTLILMLRSEDSAIHYEAVGVIGNLVHSS 280 (717)
Q Consensus 233 ~L~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~ 280 (717)
.+..+-+++ -.-..+.+....++++++-.|+..|+-++..+..++
T Consensus 486 ~~eeDfkd~---~ill~aye~t~ncl~nn~lpv~ieAalAlq~fi~~~ 530 (970)
T COG5656 486 TIEEDFKDN---GILLEAYENTHNCLKNNHLPVMIEAALALQFFIFNE 530 (970)
T ss_pred HHHHhcccc---hHHHHHHHHHHHHHhcCCcchhhhHHHHHHHHHhch
Confidence 996533332 222234566777888888899999999998887654
No 290
>KOG2611 consensus Neurochondrin/leucine-rich protein (Neurochondrin) [Function unknown]
Probab=82.02 E-value=70 Score=33.43 Aligned_cols=130 Identities=16% Similarity=0.178 Sum_probs=89.4
Q ss_pred HHHHHHHcCCCHHHHHHHHHHHHHhhcCCh---HHHHHHHHcCChHHHHHhhccCC------hHHHH-HHHHHHHHHhcC
Q 005044 252 PTLILMLRSEDSAIHYEAVGVIGNLVHSSP---NIKKEVLAAGALQPVIGLLSSCC------SESQR-EAALLLGQFAAT 321 (717)
Q Consensus 252 ~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~---~~~~~~~~~g~l~~L~~ll~~~~------~~~~~-~a~~~L~~l~~~ 321 (717)
..+..++...+++-+..|+-....++.+.+ ..++.+.++-+.+.+-.++.+.+ +.+.. -+..+|.-+|+
T Consensus 14 ~~~~~L~~~k~D~e~fAaLllVTK~vK~~Di~a~~kk~vfeAVGf~Fl~rLl~tk~~p~dcpd~Vy~~i~itvLacFC~- 92 (698)
T KOG2611|consen 14 DDCLKLLKGKRDEERFAALLLVTKFVKNDDIVALNKKLVFEAVGFHFLDRLLRTKSGPGDCPDDVYLQISITVLACFCR- 92 (698)
T ss_pred hhHHHHhcccChHHHHHHHHHHHHHhcccchhhhhhhhHHHHhccchHHHHhhcCCCCCCCcHHHHHHHHHHHHHHHhC-
Confidence 335667777777778888888888876543 24566778878888888886532 33433 34456666664
Q ss_pred ChhhH--HHHHhcCChHHHHHHhcC-CCH------HHHHHHHHHHHHhhcCCCCchhhHhcCChHHHHHhhc
Q 005044 322 DSDCK--VHIVQRGAVRPLIEMLQS-PDV------QLREMSAFALGRLAQDMHNQAGIAHNGGLVPLLKLLD 384 (717)
Q Consensus 322 ~~~~~--~~l~~~~~l~~L~~~l~~-~~~------~v~~~a~~~L~~l~~~~~~~~~l~~~~~l~~L~~ll~ 384 (717)
.++.. ..++ +-||.|+..+.. .++ .+...+-.+|..++..+.....++..|+++.+.++-.
T Consensus 93 ~pElAsh~~~v--~~IP~llev~~~~~d~d~e~~~~m~~d~Y~cL~~Va~~e~G~~~Lia~G~~~~~~Q~y~ 162 (698)
T KOG2611|consen 93 VPELASHEEMV--SRIPLLLEVMSKGIDTDYEDNLIMLEDCYECLYLVATAEAGLMTLIASGGLRVIAQMYE 162 (698)
T ss_pred ChhhccCHHHH--HhhhHHHHHHHhcCCCchhhhHHHHHHHHHHHHHHhcCCchhHHHHhcCchHHHHHHHh
Confidence 34332 2233 358999999854 232 2677888899999998888889999999999987653
No 291
>PF11865 DUF3385: Domain of unknown function (DUF3385); InterPro: IPR024585 This uncharacterised domain is is typically between 160 to 172 amino acids in length. It is found in the phosphatidylinositol kinase-related protein kinases TOR (target of rapamycin). In Saccharomyces cerevisiae the TOR proteins, TOR1 and TOR2, regulate growth in a rapamycin-sensitive manner [].
Probab=82.01 E-value=11 Score=33.43 Aligned_cols=147 Identities=14% Similarity=0.076 Sum_probs=77.1
Q ss_pred HHHHhhhhhccccchHHHHHHHHHHHHHHHHhhc-ChhhHHHHHhCCChHHHHHhhcCCCCCccccCCCccchHHHhHHH
Q 005044 59 VSAQVNVLNTTFSWLEADRAAAKRATHVLAELAK-NEEVVNWIVEGGAVPALVKHLQAPPTSEADRNLKPFEHEVEKGSA 137 (717)
Q Consensus 59 i~~l~~~L~~~~~~~~~~~~~~~~a~~~L~~l~~-~~~~~~~~~~~g~i~~L~~lL~~~~~~~~~~~~~~~~~~v~~~a~ 137 (717)
-|.+++.|...+... .+..++.++++.|+-+.. ||-....+... .+ .--..... ........
T Consensus 8 yP~LL~~L~~iLk~e-~s~~iR~E~lr~lGilGALDP~~~k~~~~~--~~---~~~~~~~~-----------~~~~~~~l 70 (160)
T PF11865_consen 8 YPELLDILLNILKTE-QSQSIRREALRVLGILGALDPYKHKSIQKS--LD---SKSSENSN-----------DESTDISL 70 (160)
T ss_pred hHHHHHHHHHHHHhC-CCHHHHHHHHHHhhhccccCcHHHhccccc--CC---cccccccc-----------ccchhhHH
Confidence 456666666665555 346689999999999877 65433322111 01 00000000 01111111
Q ss_pred HHHHHhc-CChhhHHHHHhCCChHHHHHHHhccccCCCccchhHHHHHHHHHHHHHhhcCchhhhHHHhcCCcHHHHHhh
Q 005044 138 FALGLLA-VKPEHQQLIVDNGALSHLVNLLKRHMDSNCSRAVNSVIRRAADAITNLAHENSSIKTRVRMEGGIPPLVELL 216 (717)
Q Consensus 138 ~~L~~l~-~~~~~~~~~~~~~~i~~L~~lL~~~~~~~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll 216 (717)
.. .... ..++.-. ..++..|+..|++..-. .-...++.++.++... ...+..-.-.-++|.++..+
T Consensus 71 ~~-~~~~~~~ee~y~----~vvi~~L~~iL~D~sLs-------~~h~~vv~ai~~If~~-l~~~cv~~L~~viP~~l~~i 137 (160)
T PF11865_consen 71 PM-MGISPSSEEYYP----TVVINALMRILRDPSLS-------SHHTAVVQAIMYIFKS-LGLKCVPYLPQVIPIFLRVI 137 (160)
T ss_pred hh-ccCCCchHHHHH----HHHHHHHHHHHHhhhhH-------HHHHHHHHHHHHHHHh-cCcCchhHHHHHhHHHHHHH
Confidence 11 1121 2333322 33477888888876542 3334455666665532 22222222335788888888
Q ss_pred cCCCHHHHHHHHHHHHHhh
Q 005044 217 EFTDTKVQRAAAGALRTLA 235 (717)
Q Consensus 217 ~~~~~~v~~~a~~~L~~L~ 235 (717)
+..++..++....-|..|.
T Consensus 138 ~~~~~~~~e~~~~qL~~lv 156 (160)
T PF11865_consen 138 RTCPDSLREFYFQQLADLV 156 (160)
T ss_pred HhCCHHHHHHHHHHHHHHH
Confidence 8777788887777776665
No 292
>KOG1949 consensus Uncharacterized conserved protein [Function unknown]
Probab=81.55 E-value=90 Score=34.40 Aligned_cols=148 Identities=11% Similarity=0.087 Sum_probs=93.6
Q ss_pred HHHHHHHcCCCHHHHHHHHHHHHHhhcC-ChHH----HHHHHHcCChHHHHHhhccCChHHHHHHHHHHHHHhcCChhhH
Q 005044 252 PTLILMLRSEDSAIHYEAVGVIGNLVHS-SPNI----KKEVLAAGALQPVIGLLSSCCSESQREAALLLGQFAATDSDCK 326 (717)
Q Consensus 252 ~~L~~ll~~~~~~v~~~a~~~L~~l~~~-~~~~----~~~~~~~g~l~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~ 326 (717)
|.|.+.|+-.+..||..|+..+.++--- .++. ...++ ..-...+..+|.++.+.+|..|..-++.+.+..=...
T Consensus 177 p~l~R~L~a~Ns~VrsnAa~lf~~~fP~~dpd~~~e~mD~i~-~kQf~~l~~LL~d~~p~VRS~a~~gv~k~~s~fWe~i 255 (1005)
T KOG1949|consen 177 PILWRGLKARNSEVRSNAALLFVEAFPIRDPDLHAEEMDSII-QKQFEELYSLLEDPYPMVRSTAILGVCKITSKFWEMI 255 (1005)
T ss_pred HHHHHhhccCchhhhhhHHHHHHHhccCCCCCccHHHHHHHH-HHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHHHHc
Confidence 5666778889999999999999988421 1211 12222 2345678899999999999998887776643110100
Q ss_pred HHHHhcCChHHHHHHh-cCCCHHHHHHHHHHHHHhhcCCCCchhhHhcCChHHHHHhhcCCChhHHHHHHHHHHhcc
Q 005044 327 VHIVQRGAVRPLIEML-QSPDVQLREMSAFALGRLAQDMHNQAGIAHNGGLVPLLKLLDSKNGSLQHNAAFALYGLA 402 (717)
Q Consensus 327 ~~l~~~~~l~~L~~~l-~~~~~~v~~~a~~~L~~l~~~~~~~~~l~~~~~l~~L~~ll~~~~~~v~~~a~~~L~~l~ 402 (717)
..-+-..++..+..-+ .+...+||......|..+..++.....+ ..+++.+-..|+++...||.++...|..+-
T Consensus 256 P~~i~~~ll~kI~d~~a~dt~s~VR~svf~gl~~~l~np~sh~~l--e~~Lpal~~~l~D~se~VRvA~vd~ll~ik 330 (1005)
T KOG1949|consen 256 PPTILIDLLKKITDELAFDTSSDVRCSVFKGLPMILDNPLSHPLL--EQLLPALRYSLHDNSEKVRVAFVDMLLKIK 330 (1005)
T ss_pred CHHHHHHHHHHHHHHhhhccchheehhHhcCcHHHHcCccchhHH--HHHHHhcchhhhccchhHHHHHHHHHHHHH
Confidence 0000011222333333 2356688888888888888776543322 224555666778888999999998888774
No 293
>PF12031 DUF3518: Domain of unknown function (DUF3518); InterPro: IPR021906 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is about 260 amino acids in length. This domain is found associated with PF01388 from PFAM.
Probab=80.85 E-value=0.77 Score=42.72 Aligned_cols=91 Identities=21% Similarity=0.268 Sum_probs=66.3
Q ss_pred hhHHHHHHHHHHhccCCCcchHHHHHhcCccccccchhHHhhhHHHHHHHHHHHHHHhhhchHHHHHHHHhhc-chhHHH
Q 005044 388 GSLQHNAAFALYGLADNEDNVADFIRVGGVQKLQDGEFIVQATKDCVAKTLKRLEEKIHGRVLNHLLYLMRVA-EKGVQR 466 (717)
Q Consensus 388 ~~v~~~a~~~L~~l~~~~~~~~~l~~~~~i~~L~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~L~~ll~~~-~~~v~~ 466 (717)
-.-|..|+.+|++|+-.+.|...+...+-...+. .++..|+.++... ++..|+
T Consensus 138 lSPqrlaLEaLcKLsV~e~NVDliLaTpp~sRlE--------------------------~l~~~L~r~l~~~e~~v~RE 191 (257)
T PF12031_consen 138 LSPQRLALEALCKLSVIENNVDLILATPPFSRLE--------------------------RLFHTLVRLLGMREDQVCRE 191 (257)
T ss_pred CCHHHHHHHHHHHhheeccCcceeeeCCCHHHHH--------------------------HHHHHHHHHhccccchhHHH
Confidence 3568899999999998777765555544322211 2566678887765 778899
Q ss_pred HHHHHHHhccCCCC--CceeeecCCCHHHHHHHhcCCCch
Q 005044 467 RVALALAHLCSPDD--QRTIFIDGGGLELLLGLLGSTNPK 504 (717)
Q Consensus 467 ~a~~aL~~l~~~~~--~~~~~~~~~~l~~L~~ll~~~~~~ 504 (717)
-|+..|.+++.++. .+..-.+.+.+..|+.++++....
T Consensus 192 fAvvlL~~La~~~~~~~r~iA~q~~~i~~Li~FiE~a~~~ 231 (257)
T PF12031_consen 192 FAVVLLSNLAQGDEAAARAIAMQKPCISHLIAFIEDAEQN 231 (257)
T ss_pred HHHHHHHHHhcccHHHHHHHHHhhchHHHHHHHHHHHHHH
Confidence 99999999998877 444555678899999999875443
No 294
>PF08324 PUL: PUL domain; InterPro: IPR013535 The PUL (after PLAP, UFD3 and lub1) domain is a predicted predominantly alpha helical globular domain found in eukaryotes. It is found in association with either WD repeats (see PDOC00574 from PROSITEDOC) and the PFU domain (see PDOC51394 from PROSITEDOC) or PPPDE and thioredoxin (see PDOC00172 from PROSITEDOC) domains. The PUL domain is a protein-protein interaction domain [, ]. Some proteins known to contain a PUL domain are listed below: Saccharomyces cerevisiae DOA1 (UFD3, ZZZ4), involved in ubiquitin conjugation pathway. DOA1 participates in the regulation of the ubiquitin conjugation pathway involving CDC48 by hindering multiubiquitination of substrates at the CDC48 chaperone. Schizosaccharomyces pombe ubiquitin homeostasis protein lub1, acts as a negative regulator of vacuole-dependent ubiquitin degradation. Mammalian phospholipase A-2-activating protein (PLA2P, PLAA), the homologue of DOA1. PLA2P plays an important role in the regulation of specific inflammatory disease processes. ; PDB: 3EBB_A 3L3F_X 3GAE_B 3PST_A 3PSP_A.
Probab=79.99 E-value=11 Score=37.09 Aligned_cols=149 Identities=17% Similarity=0.087 Sum_probs=89.1
Q ss_pred HHHHHHHHHHhhcChhhHHHHHhCC--ChHHHHHhhcCCCCCccccCCCccchHHHhHHHHHHHHhcCChhhHHHHHhCC
Q 005044 80 AKRATHVLAELAKNEEVVNWIVEGG--AVPALVKHLQAPPTSEADRNLKPFEHEVEKGSAFALGLLAVKPEHQQLIVDNG 157 (717)
Q Consensus 80 ~~~a~~~L~~l~~~~~~~~~~~~~g--~i~~L~~lL~~~~~~~~~~~~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~ 157 (717)
+.=++..++-++.++.....+...+ ....+..++...... ..+..+..+++++.|+..++..+..+....
T Consensus 80 ~fP~lDLlRl~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~--------~~~~~~ml~lR~l~NlF~~~~~~~~~~~~~ 151 (268)
T PF08324_consen 80 RFPALDLLRLAALHPPASDLLASEDSGIADLLSTLISSGSSS--------SPPANQMLALRLLANLFSHPPGRQLLLSHF 151 (268)
T ss_dssp -HHHHHHHHHHCCCHCHHHHHHSTTTH-HHHHHHHHHCCTTT--------SSHHHHHHHHHHHHHHTTSCCCHHHHHCTH
T ss_pred chhHHhHHHHHHhCccHHHHHhccccchHHHHHHHHHhccCC--------CcHHHHHHHHHHHHHhhCCCccHHHHHhcc
Confidence 6777777777777777666665443 356666666554321 234888899999999998777777766543
Q ss_pred ChHHHHHHHhccccCCCccchhHHHHHHHHHHHHHhhcCchhh-hHHHhcCCcHHHHHhh-cC-CCHHHHHHHHHHHHHh
Q 005044 158 ALSHLVNLLKRHMDSNCSRAVNSVIRRAADAITNLAHENSSIK-TRVRMEGGIPPLVELL-EF-TDTKVQRAAAGALRTL 234 (717)
Q Consensus 158 ~i~~L~~lL~~~~~~~~~~~~~~~~~~a~~~L~~l~~~~~~~~-~~~~~~~~i~~L~~ll-~~-~~~~v~~~a~~~L~~L 234 (717)
. ..+...+......... ....++..++..+.|++......+ ..-.....+..+.+.+ .. .+++....++.+|++|
T Consensus 152 ~-~~i~~~~~~~~~~~~~-~~kn~~~A~ATl~~Nlsv~~~~~~~~~~~~~~ll~~i~~~~~~~~~d~Ea~~R~LvAlGtL 229 (268)
T PF08324_consen 152 D-SSILELLSSLLSSLLD-SNKNVRIALATLLLNLSVLLHKNRSDEEWQSELLSSIIEVLSREESDEEALYRLLVALGTL 229 (268)
T ss_dssp H-TCHHHHCHCCCTTS-H-HHHHHHHHHHHHHHHHHHHHHHCTS-CCHHHHHHHHHHHHCHCCHTSHHHHHHHHHHHHHH
T ss_pred c-chHHHHHHHHhhcccc-ccHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHhccccCCHHHHHHHHHHHHHH
Confidence 2 1344444432221100 011788888899999885221111 0001111344555533 22 6899999999999999
Q ss_pred hccC
Q 005044 235 AFKN 238 (717)
Q Consensus 235 ~~~~ 238 (717)
....
T Consensus 230 ~~~~ 233 (268)
T PF08324_consen 230 LSSS 233 (268)
T ss_dssp HCCS
T ss_pred hccC
Confidence 9643
No 295
>PF14726 RTTN_N: Rotatin, an armadillo repeat protein, centriole functioning
Probab=78.95 E-value=13 Score=29.70 Aligned_cols=69 Identities=23% Similarity=0.175 Sum_probs=53.9
Q ss_pred hcCChHHHHHHhcCCCHHHHHHHHHHHHHhhcCCCCchhhHhcCChHHHHHhhcCCChhHHHHHHHHHH
Q 005044 331 QRGAVRPLIEMLQSPDVQLREMSAFALGRLAQDMHNQAGIAHNGGLVPLLKLLDSKNGSLQHNAAFALY 399 (717)
Q Consensus 331 ~~~~l~~L~~~l~~~~~~v~~~a~~~L~~l~~~~~~~~~l~~~~~l~~L~~ll~~~~~~v~~~a~~~L~ 399 (717)
...++..|+.|.+.++......++..+..+..++.....+.+-|+...|-++-...++..+...-.++.
T Consensus 28 ~~~Ll~~LleWFnf~~~~~~~~VL~Ll~~L~~~~~a~~~l~~iG~~~fL~klr~~~~~~~~~~id~il~ 96 (98)
T PF14726_consen 28 ERLLLKQLLEWFNFPPVPMKEEVLALLLRLLKSPYAAQILRDIGAVRFLSKLRPNVEPNLQAEIDEILD 96 (98)
T ss_pred HHHHHHHHHHHhCCCCCccHHHHHHHHHHHHhCcHHHHHHHHccHHHHHHHHHhcCCHHHHHHHHHHHh
Confidence 456778899999988877889999999999999888888888898888777666666666655554443
No 296
>PF14500 MMS19_N: Dos2-interacting transcription regulator of RNA-Pol-II
Probab=78.47 E-value=69 Score=31.24 Aligned_cols=148 Identities=16% Similarity=0.107 Sum_probs=79.3
Q ss_pred HHHHHhhcCCCHHHHHHHHHHHHHhhccChhhHHHHHhcCCHHHHHHHHcC--CCHHHHHHHHHHHHHhhcCChHHHHHH
Q 005044 210 PPLVELLEFTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRS--EDSAIHYEAVGVIGNLVHSSPNIKKEV 287 (717)
Q Consensus 210 ~~L~~ll~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~g~i~~L~~ll~~--~~~~v~~~a~~~L~~l~~~~~~~~~~~ 287 (717)
..|-..|.++++.+|..|...|..+...-+... ....-+..|+.++.+ .|......++.++..|..........
T Consensus 2 ~~Lg~~Ltsed~~~R~ka~~~Ls~vL~~lp~~~---L~~~ev~~L~~F~~~rl~D~~~~~~~l~gl~~L~~~~~~~~~~- 77 (262)
T PF14500_consen 2 QSLGEYLTSEDPIIRAKALELLSEVLERLPPDF---LSRQEVQVLLDFFCSRLDDHACVQPALKGLLALVKMKNFSPES- 77 (262)
T ss_pred cchhhhhCCCCHHHHHHHHHHHHHHHHhCCHhh---ccHHHHHHHHHHHHHHhccHhhHHHHHHHHHHHHhCcCCChhh-
Confidence 345567888999999999999998876433221 111224555555443 34445555566666665322110000
Q ss_pred HHcCChHHHHHhhc--cCChHHHHHHHHHHHHHhcCChhhHHHHHhcCChHHHHHHhcC-CCHHHHHHHHHHHHHhhcC
Q 005044 288 LAAGALQPVIGLLS--SCCSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQS-PDVQLREMSAFALGRLAQD 363 (717)
Q Consensus 288 ~~~g~l~~L~~ll~--~~~~~~~~~a~~~L~~l~~~~~~~~~~l~~~~~l~~L~~~l~~-~~~~v~~~a~~~L~~l~~~ 363 (717)
...++..+.+-.. +-....|..+...+..+......... -...+++..+++.+.. .||.....+...+..+...
T Consensus 78 -~~~i~~~l~~~~~~q~~~q~~R~~~~~ll~~l~~~~~~~l~-~~~~~fv~~~i~~~~gEkDPRnLl~~F~l~~~i~~~ 154 (262)
T PF14500_consen 78 -AVKILRSLFQNVDVQSLPQSTRYAVYQLLDSLLENHREALQ-SMGDDFVYGFIQLIDGEKDPRNLLLSFKLLKVILQE 154 (262)
T ss_pred -HHHHHHHHHHhCChhhhhHHHHHHHHHHHHHHHHHhHHHHH-hchhHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHh
Confidence 0111222222111 12245677777777777643222221 1224567777777755 5787766666666666543
No 297
>PF11865 DUF3385: Domain of unknown function (DUF3385); InterPro: IPR024585 This uncharacterised domain is is typically between 160 to 172 amino acids in length. It is found in the phosphatidylinositol kinase-related protein kinases TOR (target of rapamycin). In Saccharomyces cerevisiae the TOR proteins, TOR1 and TOR2, regulate growth in a rapamycin-sensitive manner [].
Probab=78.31 E-value=15 Score=32.74 Aligned_cols=144 Identities=17% Similarity=0.167 Sum_probs=78.2
Q ss_pred CHHHHHHHHcCC-CHHHHHHHHHHHHHhhcCChHHHHHHHHcCChHHHHHhhccCChHHHHHHHHHHHHHhcCChhhHHH
Q 005044 250 ALPTLILMLRSE-DSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLSSCCSESQREAALLLGQFAATDSDCKVH 328 (717)
Q Consensus 250 ~i~~L~~ll~~~-~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~l~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~ 328 (717)
+++.|+++++.+ +.++|.+++++|+.|-.-++...+.+... .+.-. -............ ...+.....++.
T Consensus 11 LL~~L~~iLk~e~s~~iR~E~lr~lGilGALDP~~~k~~~~~--~~~~~--~~~~~~~~~~~~l-~~~~~~~~~ee~--- 82 (160)
T PF11865_consen 11 LLDILLNILKTEQSQSIRREALRVLGILGALDPYKHKSIQKS--LDSKS--SENSNDESTDISL-PMMGISPSSEEY--- 82 (160)
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHhhhccccCcHHHhccccc--CCccc--cccccccchhhHH-hhccCCCchHHH---
Confidence 567788888865 58999999999999966666543322111 11000 0000111111111 111111011222
Q ss_pred HHhcCChHHHHHHhcCCC-HHHHHHHHHHHHHhhcCCCCchhhHhcCChHHHHHhhcCCChhHHHHHHHHHHhcc
Q 005044 329 IVQRGAVRPLIEMLQSPD-VQLREMSAFALGRLAQDMHNQAGIAHNGGLVPLLKLLDSKNGSLQHNAAFALYGLA 402 (717)
Q Consensus 329 l~~~~~l~~L~~~l~~~~-~~v~~~a~~~L~~l~~~~~~~~~l~~~~~l~~L~~ll~~~~~~v~~~a~~~L~~l~ 402 (717)
.-..++..|+..|+++. ..-...++.++.++......+..-.-...++.+++.+...+...++...+-|..|.
T Consensus 83 -y~~vvi~~L~~iL~D~sLs~~h~~vv~ai~~If~~l~~~cv~~L~~viP~~l~~i~~~~~~~~e~~~~qL~~lv 156 (160)
T PF11865_consen 83 -YPTVVINALMRILRDPSLSSHHTAVVQAIMYIFKSLGLKCVPYLPQVIPIFLRVIRTCPDSLREFYFQQLADLV 156 (160)
T ss_pred -HHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHhcCcCchhHHHHHhHHHHHHHHhCCHHHHHHHHHHHHHHH
Confidence 22335678888888753 23334566677776654333333333456888888888777788887777666553
No 298
>PF12031 DUF3518: Domain of unknown function (DUF3518); InterPro: IPR021906 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is about 260 amino acids in length. This domain is found associated with PF01388 from PFAM.
Probab=78.12 E-value=7.8 Score=36.34 Aligned_cols=82 Identities=22% Similarity=0.270 Sum_probs=60.9
Q ss_pred HHHHHHHHHHHHhhccChhhHHHHHhcC-------CHHHHHHHHcC-CCHHHHHHHHHHHHHhhcCChHHHHH-HHHcCC
Q 005044 222 KVQRAAAGALRTLAFKNDENKNQIVECN-------ALPTLILMLRS-EDSAIHYEAVGVIGNLVHSSPNIKKE-VLAAGA 292 (717)
Q Consensus 222 ~v~~~a~~~L~~L~~~~~~~~~~~~~~g-------~i~~L~~ll~~-~~~~v~~~a~~~L~~l~~~~~~~~~~-~~~~g~ 292 (717)
.-|..|+.+|+.|+- .+.|...+...+ ++..|++++.. +++-.|+.|+-.|.+++..++..... ..+.+.
T Consensus 139 SPqrlaLEaLcKLsV-~e~NVDliLaTpp~sRlE~l~~~L~r~l~~~e~~v~REfAvvlL~~La~~~~~~~r~iA~q~~~ 217 (257)
T PF12031_consen 139 SPQRLALEALCKLSV-IENNVDLILATPPFSRLERLFHTLVRLLGMREDQVCREFAVVLLSNLAQGDEAAARAIAMQKPC 217 (257)
T ss_pred CHHHHHHHHHHHhhe-eccCcceeeeCCCHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHhcccHHHHHHHHHhhch
Confidence 468999999999997 566655554443 34556666654 56778999999999999988776544 445688
Q ss_pred hHHHHHhhccCC
Q 005044 293 LQPVIGLLSSCC 304 (717)
Q Consensus 293 l~~L~~ll~~~~ 304 (717)
+..|+.++.+..
T Consensus 218 i~~Li~FiE~a~ 229 (257)
T PF12031_consen 218 ISHLIAFIEDAE 229 (257)
T ss_pred HHHHHHHHHHHH
Confidence 999999998753
No 299
>PF11822 DUF3342: Domain of unknown function (DUF3342); InterPro: IPR021777 This family of proteins are functionally uncharacterised. This family is found in bacteria. This presumed domain is typically between 170 to 303 amino acids in length. The N-terminal half of this family is a BTB-like domain.
Probab=77.83 E-value=1.2 Score=43.71 Aligned_cols=58 Identities=22% Similarity=0.424 Sum_probs=48.0
Q ss_pred cCChhcHHHHHHHHHHcCcHHHHHHHHHHHHHhHHHhcCCc-hhhhchhhcHHHHHHHH
Q 005044 646 DISLENVSSMYELSEAFHAISLRHTCILYIMEHFDKLSTRP-GHSNLIQRIIPEIHNYF 703 (717)
Q Consensus 646 ~i~~~n~~~~~~~a~~~~~~~L~~~~~~~i~~~~~~~~~~~-~f~~l~~~~~~~l~~~l 703 (717)
.++++|++.++.=|+..+.+.|.+.|+.|+..|+.+++.++ ++..|+.+.+..|.+.+
T Consensus 71 ~l~~~NvvsIliSS~FL~M~~Lve~cl~y~~~~~~~Iv~~~~nl~Cl~~~Ll~RLa~~~ 129 (317)
T PF11822_consen 71 SLTPSNVVSILISSEFLQMESLVEECLQYCHDHMSEIVASPCNLNCLNDNLLTRLADMF 129 (317)
T ss_pred cCCcCcEEEeEehhhhhccHHHHHHHHHHHHHhHHHHHcCCCCcccCCHHHHHHHHHhc
Confidence 48999999999999999999999999999999999999864 56667666555554433
No 300
>KOG2611 consensus Neurochondrin/leucine-rich protein (Neurochondrin) [Function unknown]
Probab=77.76 E-value=96 Score=32.49 Aligned_cols=190 Identities=13% Similarity=0.126 Sum_probs=114.3
Q ss_pred HHHHHHHHHHhhcC----hhhHHHHHhCCChHHHHHhhcCCCCCccccCCCccchHHHhHHHHHHHHhcCChhhHHHHHh
Q 005044 80 AKRATHVLAELAKN----EEVVNWIVEGGAVPALVKHLQAPPTSEADRNLKPFEHEVEKGSAFALGLLAVKPEHQQLIVD 155 (717)
Q Consensus 80 ~~~a~~~L~~l~~~----~~~~~~~~~~g~i~~L~~lL~~~~~~~~~~~~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~ 155 (717)
+..|+-....++++ ..++..+.+.-+.+.+-++|.+.+.+. +. .|.-.+.-++..|+-+|..|+....---
T Consensus 28 ~fAaLllVTK~vK~~Di~a~~kk~vfeAVGf~Fl~rLl~tk~~p~---dc--pd~Vy~~i~itvLacFC~~pElAsh~~~ 102 (698)
T KOG2611|consen 28 RFAALLLVTKFVKNDDIVALNKKLVFEAVGFHFLDRLLRTKSGPG---DC--PDDVYLQISITVLACFCRVPELASHEEM 102 (698)
T ss_pred HHHHHHHHHHHhcccchhhhhhhhHHHHhccchHHHHhhcCCCCC---CC--cHHHHHHHHHHHHHHHhCChhhccCHHH
Confidence 78888888888873 455666788888899999998755421 01 1224455577788888877776432222
Q ss_pred CCChHHHHHHHhccccCCCccchhHHHHHHHHHHHHHhhcCchhhhHHHhcCCcHHHHHhhcCCC-HHHHHHHHHHHHHh
Q 005044 156 NGALSHLVNLLKRHMDSNCSRAVNSVIRRAADAITNLAHENSSIKTRVRMEGGIPPLVELLEFTD-TKVQRAAAGALRTL 234 (717)
Q Consensus 156 ~~~i~~L~~lL~~~~~~~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~-~~v~~~a~~~L~~L 234 (717)
.+.||.|..++....+.. +...-.+...+-.+|...+.. +.....++..|+++.+.++-.-++ ..-...++.++.-+
T Consensus 103 v~~IP~llev~~~~~d~d-~e~~~~m~~d~Y~cL~~Va~~-e~G~~~Lia~G~~~~~~Q~y~~~~~~~d~alal~Vlll~ 180 (698)
T KOG2611|consen 103 VSRIPLLLEVMSKGIDTD-YEDNLIMLEDCYECLYLVATA-EAGLMTLIASGGLRVIAQMYELPDGSHDMALALKVLLLL 180 (698)
T ss_pred HHhhhHHHHHHHhcCCCc-hhhhHHHHHHHHHHHHHHhcC-CchhHHHHhcCchHHHHHHHhCCCCchhHHHHHHHHHHH
Confidence 355999999998765432 111224778888899988885 555667788999999987654332 22233344444333
Q ss_pred hcc---ChhhHHHHHhcCCHHHHHHHHcCCCHHHHHHHHHHHHHhhc
Q 005044 235 AFK---NDENKNQIVECNALPTLILMLRSEDSAIHYEAVGVIGNLVH 278 (717)
Q Consensus 235 ~~~---~~~~~~~~~~~g~i~~L~~ll~~~~~~v~~~a~~~L~~l~~ 278 (717)
... -++....+.. ++..+-.-+...+...+.+.+..|..+..
T Consensus 181 ~~~~~cw~e~~~~fla--li~~va~df~~~~~a~KfElc~lL~~vl~ 225 (698)
T KOG2611|consen 181 VSKLDCWSETIERFLA--LIAAVARDFAVLHNALKFELCHLLSAVLS 225 (698)
T ss_pred HHhcccCcCCHHHHHH--HHHHHHHHHHHhhhHHHHHHHHHHHHHHh
Confidence 321 1122222221 13333333334566778888888886543
No 301
>PF08167 RIX1: rRNA processing/ribosome biogenesis
Probab=76.73 E-value=24 Score=31.64 Aligned_cols=108 Identities=22% Similarity=0.190 Sum_probs=67.4
Q ss_pred ChHHHHHhhccCChHHHHHHHHHHHHHhcCChhhHHHHHh--cCChHHHHHHhcCC-CHHHHHHHHHHHHHhhcCCCCch
Q 005044 292 ALQPVIGLLSSCCSESQREAALLLGQFAATDSDCKVHIVQ--RGAVRPLIEMLQSP-DVQLREMSAFALGRLAQDMHNQA 368 (717)
Q Consensus 292 ~l~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~l~~--~~~l~~L~~~l~~~-~~~v~~~a~~~L~~l~~~~~~~~ 368 (717)
....+.+++.+.++..|-.++..+...+..++. ..+.+ ...+..++..++.+ .+.+.+.++.+|..|...-....
T Consensus 26 l~~ri~~LL~s~~~~~rw~G~~Ll~~~~~~~~~--e~l~~~~~~W~~~Ll~~L~~~~~~~~~~~ai~~L~~l~~~~~~~p 103 (165)
T PF08167_consen 26 LVTRINSLLQSKSAYSRWAGLCLLKVTVEQCSW--EILLSHGSQWLRALLSILEKPDPPSVLEAAIITLTRLFDLIRGKP 103 (165)
T ss_pred HHHHHHHHhCCCChhhHHHHHHHHHHHHHHhhH--HHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhcCCC
Confidence 456678888888888888888877777644321 22222 34567788888774 56788889999998885443333
Q ss_pred hhHhcC-------ChHHHHHhhcCCChhHHHHHHHHHHhccC
Q 005044 369 GIAHNG-------GLVPLLKLLDSKNGSLQHNAAFALYGLAD 403 (717)
Q Consensus 369 ~l~~~~-------~l~~L~~ll~~~~~~v~~~a~~~L~~l~~ 403 (717)
.+.+.. ++..+++++.+ ......++.+|..+..
T Consensus 104 ~l~Rei~tp~l~~~i~~ll~l~~~--~~~~~~~l~~L~~ll~ 143 (165)
T PF08167_consen 104 TLTREIATPNLPKFIQSLLQLLQD--SSCPETALDALATLLP 143 (165)
T ss_pred chHHHHhhccHHHHHHHHHHHHhc--cccHHHHHHHHHHHHH
Confidence 333222 23334444443 4566677777776643
No 302
>KOG2011 consensus Sister chromatid cohesion complex Cohesin, subunit STAG/IRR1/SCC3 [Cell cycle control, cell division, chromosome partitioning]
Probab=75.77 E-value=1.7e+02 Score=34.38 Aligned_cols=135 Identities=19% Similarity=0.197 Sum_probs=92.1
Q ss_pred cCCCHHHHHHHHHHHHHhhcCChHHHHHHHHcCChHHHHHhhccCChHHHHHHHHHHHHHhcCChhh-HHHHHhcCChHH
Q 005044 259 RSEDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLSSCCSESQREAALLLGQFAATDSDC-KVHIVQRGAVRP 337 (717)
Q Consensus 259 ~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~l~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~-~~~l~~~~~l~~ 337 (717)
++-++++|..++..|+--....| ..+.+...++.+--.|.+.+..||..++.+|..|...+... .....-..+=..
T Consensus 297 RDV~~~IRaiCiqeLgiWi~~yP---~~Fl~dsYLKYiGWtLsDk~~~VRl~~lkaL~~L~e~~~~~~~L~lFtsRFK~R 373 (1048)
T KOG2011|consen 297 RDVDPDIRAICIQELGIWIKSYP---EIFLSDSYLKYIGWTLSDKNGTVRLRCLKALIKLYEKDEDKDKLELFTSRFKDR 373 (1048)
T ss_pred ccCchHHHHHHHHHHHHHHHhcc---HHHhcchHHHHhcceeecCccHHHHHHHHHHHHHHhccccchHHHHHHHHHHHH
Confidence 45688999999999988876666 55677777888888889999999999999999997653322 122333445566
Q ss_pred HHHHh-cCCCHHHHHHHHHHHHHhhcCCCCchhhHhcCChHHHHHhhcCCChhHHHHHHHHHHhc
Q 005044 338 LIEML-QSPDVQLREMSAFALGRLAQDMHNQAGIAHNGGLVPLLKLLDSKNGSLQHNAAFALYGL 401 (717)
Q Consensus 338 L~~~l-~~~~~~v~~~a~~~L~~l~~~~~~~~~l~~~~~l~~L~~ll~~~~~~v~~~a~~~L~~l 401 (717)
++++. .+-+..|+..++..+..+.. ..++...-+..+..++.+.+..++..|...+..=
T Consensus 374 IVeMadrd~~~~Vrav~L~~~~~~~~-----~g~L~d~di~~Vy~Li~d~~r~~~~aa~~fl~~k 433 (1048)
T KOG2011|consen 374 IVEMADRDRNVSVRAVGLVLCLLLSS-----SGLLSDKDILIVYSLIYDSNRRVAVAAGEFLYKK 433 (1048)
T ss_pred HHHHHhhhcchhHHHHHHHHHHHHhc-----ccccChhHHHHHHHHHhccCcchHHHHHHHHHHH
Confidence 77777 44566666554433322211 1233334466788888999999988888776643
No 303
>KOG2676 consensus Uncharacterized conserved protein [Function unknown]
Probab=75.57 E-value=4.5 Score=39.83 Aligned_cols=64 Identities=19% Similarity=0.107 Sum_probs=55.4
Q ss_pred HHHHHHHHHhhcCchhhhHHHhcCCcHHHHHhh--cCCCHHHHHHHHHHHHHhhccChhhHHHHHh
Q 005044 184 RAADAITNLAHENSSIKTRVRMEGGIPPLVELL--EFTDTKVQRAAAGALRTLAFKNDENKNQIVE 247 (717)
Q Consensus 184 ~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll--~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~ 247 (717)
+..+.++++|..++.++..+.+.||++.++.-+ .+.+|-+++....++++|..++.++++.+.+
T Consensus 375 Hvir~ia~lcyk~~~~qD~vrel~GvaLIlsncnidD~nPfi~e~sI~c~r~Ll~nN~~NQ~~i~k 440 (478)
T KOG2676|consen 375 HVIRFIAFLCYKFSTAQDLVRELNGVALILSNCNIDDWNPFIREISILCTRLLLQNNIENQKIIGK 440 (478)
T ss_pred HHHHHHHHHHHhCCchHHHHHhcCCeEEeeccCccCCCChHHHHHHHHHHHHHHhcchhhHHHHhc
Confidence 366789999999999999999999999888755 4567999999999999999988888777654
No 304
>PF14500 MMS19_N: Dos2-interacting transcription regulator of RNA-Pol-II
Probab=75.53 E-value=84 Score=30.68 Aligned_cols=209 Identities=11% Similarity=0.083 Sum_probs=116.8
Q ss_pred HHHhHHHHHHHHhc-CChhhHHHHHhCCChHHHHHHHhccccCCCccchhHHHHHHHHHHHHHhhcCchhhhHHHhcCCc
Q 005044 131 EVEKGSAFALGLLA-VKPEHQQLIVDNGALSHLVNLLKRHMDSNCSRAVNSVIRRAADAITNLAHENSSIKTRVRMEGGI 209 (717)
Q Consensus 131 ~v~~~a~~~L~~l~-~~~~~~~~~~~~~~i~~L~~lL~~~~~~~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i 209 (717)
.+|..|+.+|+.+. .-+... ....-+..|+.+..+.-.+. .....++..+..|.....-.... ....+
T Consensus 14 ~~R~ka~~~Ls~vL~~lp~~~---L~~~ev~~L~~F~~~rl~D~------~~~~~~l~gl~~L~~~~~~~~~~--~~~i~ 82 (262)
T PF14500_consen 14 IIRAKALELLSEVLERLPPDF---LSRQEVQVLLDFFCSRLDDH------ACVQPALKGLLALVKMKNFSPES--AVKIL 82 (262)
T ss_pred HHHHHHHHHHHHHHHhCCHhh---ccHHHHHHHHHHHHHHhccH------hhHHHHHHHHHHHHhCcCCChhh--HHHHH
Confidence 99999999999888 333211 22222566666655432211 45555577777776422211111 01122
Q ss_pred HHHHHhhc--CCCHHHHHHHHHHHHHhhccChhhHHHHHhcCCHHHHHHHHcCC-CHHHHHHHHHHHHHhhcCChHHHHH
Q 005044 210 PPLVELLE--FTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSE-DSAIHYEAVGVIGNLVHSSPNIKKE 286 (717)
Q Consensus 210 ~~L~~ll~--~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~g~i~~L~~ll~~~-~~~v~~~a~~~L~~l~~~~~~~~~~ 286 (717)
..+.+-.. +-....|..+...+..+..+.......+ ..+.+..+++++.++ ||.-...+...+..+...-+
T Consensus 83 ~~l~~~~~~q~~~q~~R~~~~~ll~~l~~~~~~~l~~~-~~~fv~~~i~~~~gEkDPRnLl~~F~l~~~i~~~~~----- 156 (262)
T PF14500_consen 83 RSLFQNVDVQSLPQSTRYAVYQLLDSLLENHREALQSM-GDDFVYGFIQLIDGEKDPRNLLLSFKLLKVILQEFD----- 156 (262)
T ss_pred HHHHHhCChhhhhHHHHHHHHHHHHHHHHHhHHHHHhc-hhHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHhcc-----
Confidence 22222111 2235678888888888886332222222 234677788888764 77777777777776654322
Q ss_pred HHHcCChHHHHHhhcc----------CC--hHHHHHHHHHHHHHhcCChhhHHHHHhcCChHHHHHHhcCCCHHHHHHHH
Q 005044 287 VLAAGALQPVIGLLSS----------CC--SESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQSPDVQLREMSA 354 (717)
Q Consensus 287 ~~~~g~l~~L~~ll~~----------~~--~~~~~~a~~~L~~l~~~~~~~~~~l~~~~~l~~L~~~l~~~~~~v~~~a~ 354 (717)
. ....+.+.+.+.. ++ .-.+..-...|.+.-...+.. ..-.+|.|++-|.++.+.++..++
T Consensus 157 -~-~~~~e~lFd~~~cYFPI~F~pp~~dp~~IT~edLk~~L~~cl~s~~~f-----a~~~~p~LleKL~s~~~~~K~D~L 229 (262)
T PF14500_consen 157 -I-SEFAEDLFDVFSCYFPITFRPPPNDPYGITREDLKRALRNCLSSTPLF-----APFAFPLLLEKLDSTSPSVKLDSL 229 (262)
T ss_pred -c-chhHHHHHHHhhheeeeeeeCCCCCCCCCCHHHHHHHHHHHhcCcHhh-----HHHHHHHHHHHHcCCCcHHHHHHH
Confidence 1 2233344443321 11 123344444555543333333 234689999999999999999999
Q ss_pred HHHHHhhcC
Q 005044 355 FALGRLAQD 363 (717)
Q Consensus 355 ~~L~~l~~~ 363 (717)
.+|..++..
T Consensus 230 ~tL~~c~~~ 238 (262)
T PF14500_consen 230 QTLKACIEN 238 (262)
T ss_pred HHHHHHHHH
Confidence 999888763
No 305
>PF10521 DUF2454: Protein of unknown function (DUF2454); InterPro: IPR018870 Putative protein of unknown function; subunit of the ASTRA complex which is part of the chromatin remodeling machinery; similar to Schizosaccharomyces pombe (Fission yeast) Tti2p; may interact with Rsm23p [].
Probab=74.68 E-value=39 Score=33.49 Aligned_cols=70 Identities=17% Similarity=0.174 Sum_probs=50.9
Q ss_pred CcHHHHHhhcCCCHHHHHHHHHHHHHhhccChhhH-HHHHhcCCHHHHHHHHc------------CCCHHHHHHHHHHHH
Q 005044 208 GIPPLVELLEFTDTKVQRAAAGALRTLAFKNDENK-NQIVECNALPTLILMLR------------SEDSAIHYEAVGVIG 274 (717)
Q Consensus 208 ~i~~L~~ll~~~~~~v~~~a~~~L~~L~~~~~~~~-~~~~~~g~i~~L~~ll~------------~~~~~v~~~a~~~L~ 274 (717)
++|.++.++.+.++.++..++.+|..+....+... ..+.+.|..+.+-+.+. ++...+...+.-+|.
T Consensus 120 iiP~iL~llDD~~~~~K~~G~~lL~~ll~~~~~~~~~~L~~tGl~~v~~~al~~~L~~LP~~tp~~~s~~Ll~~ay~~L~ 199 (282)
T PF10521_consen 120 IIPPILNLLDDYSPEIKIQGCQLLHHLLEKVPAAEWDILRRTGLFSVFEDALFPCLYYLPPITPEDESLELLQAAYPALL 199 (282)
T ss_pred HHhhHHHHhcCCCHHHHHHHHHHHHHHHHhCChhhhHHHHHcChHHHHHHHHHHHhhcCCCCCCchhhHHHHHHHHHHHH
Confidence 57999999999999999999999999986333322 23677887776665443 234466777777777
Q ss_pred Hhh
Q 005044 275 NLV 277 (717)
Q Consensus 275 ~l~ 277 (717)
.++
T Consensus 200 ~L~ 202 (282)
T PF10521_consen 200 SLL 202 (282)
T ss_pred HHH
Confidence 774
No 306
>PLN03076 ARF guanine nucleotide exchange factor (ARF-GEF); Provisional
Probab=74.02 E-value=1.6e+02 Score=37.29 Aligned_cols=286 Identities=14% Similarity=0.128 Sum_probs=143.5
Q ss_pred HHHHHHHHHHHHhhcC----hhhHHHHHhCCChHHHHHhhcCCCCCccccCCCccchHHHhHHHHHHHHhcCChhhHHHH
Q 005044 78 AAAKRATHVLAELAKN----EEVVNWIVEGGAVPALVKHLQAPPTSEADRNLKPFEHEVEKGSAFALGLLAVKPEHQQLI 153 (717)
Q Consensus 78 ~~~~~a~~~L~~l~~~----~~~~~~~~~~g~i~~L~~lL~~~~~~~~~~~~~~~~~~v~~~a~~~L~~l~~~~~~~~~~ 153 (717)
.+...|+..|+.++.. ++....-.+...+..+..++.+... .++++..++++.++..... .-
T Consensus 1152 ~va~fAidsLrQLs~kfle~eEL~~f~FQkefLkPfe~im~~s~~-----------~eVrE~ILeCv~qmI~s~~---~n 1217 (1780)
T PLN03076 1152 SIAIFAMDSLRQLSMKFLEREELANYNFQNEFMKPFVIVMRKSNA-----------VEIRELIIRCVSQMVLSRV---NN 1217 (1780)
T ss_pred hHHHHHHHHHHHHHHHhcchhhhhchhHHHHHHHHHHHHHHhcCc-----------hHHHHHHHHHHHHHHHHHH---hh
Confidence 3556666666665551 1211122234456667766664332 2899999999999882211 11
Q ss_pred HhCCChHHHHHHHhccccCCCccchhHHHHHHHHHHHHHhhcCchh-----hhHHHhcCCcHHHHHhhcCC-CHHHHHHH
Q 005044 154 VDNGALSHLVNLLKRHMDSNCSRAVNSVIRRAADAITNLAHENSSI-----KTRVRMEGGIPPLVELLEFT-DTKVQRAA 227 (717)
Q Consensus 154 ~~~~~i~~L~~lL~~~~~~~~~~~~~~~~~~a~~~L~~l~~~~~~~-----~~~~~~~~~i~~L~~ll~~~-~~~v~~~a 227 (717)
+.. |.+.+..++.....+.. ..+.+.|...+..++.+.-.. ...+ ...|..|..+.... +.++-..|
T Consensus 1218 IkS-GWktIF~VLs~aa~d~~----e~iV~lAFetl~~I~~d~f~~l~~~~~~~F--~DlV~cL~~Fa~q~~~~nISL~A 1290 (1780)
T PLN03076 1218 VKS-GWKSMFMVFTTAAYDDH----KNIVLLAFEIIEKIIREYFPYITETETTTF--TDCVNCLIAFTNSRFNKDISLNA 1290 (1780)
T ss_pred hhc-CcHHHHHHHHHHHhCcc----HHHHHHHHHHHHHHHHhhhhhccccchhHH--HHHHHHHHHHHhCcCcccccHHH
Confidence 233 57777777764322111 167777888877776532110 0111 23455555555433 35566667
Q ss_pred HHHHHHhhccC---h------------------------hhHHHHH-----hcCCHHHHH---HHHcCCCHHHHHHHHHH
Q 005044 228 AGALRTLAFKN---D------------------------ENKNQIV-----ECNALPTLI---LMLRSEDSAIHYEAVGV 272 (717)
Q Consensus 228 ~~~L~~L~~~~---~------------------------~~~~~~~-----~~g~i~~L~---~ll~~~~~~v~~~a~~~ 272 (717)
+..|++++..- + .....+. ...-++.|. .+..++..+||..|+.+
T Consensus 1291 I~lL~~~~~~La~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~lW~pLL~~Ls~l~~D~RlEVR~~ALqt 1370 (1780)
T PLN03076 1291 IAFLRFCATKLAEGDLGSSSRNKDKEAPPSSPQSGKDGKQESGEFTDKDDHLYFWFPLLAGLSELSFDPRPEIRKSALQV 1370 (1780)
T ss_pred HHHHHHHHHHHHhccccccccccccccccccccccccccccccccccchhHHHHHHHHHHHHHHHhcCCcHHHHHHHHHH
Confidence 77777552210 0 0000000 011233333 33557889999999999
Q ss_pred HHHhhcC-----ChHHHHHHHHcCChHHHHHhhccC-------------------ChH----HHHHHHHHHHHHhcCChh
Q 005044 273 IGNLVHS-----SPNIKKEVLAAGALQPVIGLLSSC-------------------CSE----SQREAALLLGQFAATDSD 324 (717)
Q Consensus 273 L~~l~~~-----~~~~~~~~~~~g~l~~L~~ll~~~-------------------~~~----~~~~a~~~L~~l~~~~~~ 324 (717)
|..+... ++.....+.. +++-++...++.. +.+ ....+..+|.++..-...
T Consensus 1371 LF~iL~~yG~~Fs~~~W~~if~-~VLFPIFd~l~~~~~~~~~~~~~~~~~~~~~~~~e~~~Wl~eT~~~AL~~lvdLft~ 1449 (1780)
T PLN03076 1371 LFDTLRNHGHLFSLPLWERVFE-SVLFPIFDYVRHAIDPSGGDEPEGQGVDGDQGELDQDAWLYETCTLALQLVVDLFVK 1449 (1780)
T ss_pred HHHHHHHhhccCCHHHHHHHHH-HHHHHHHHHHHHhhccccccccccccccccccchhhhhHHHHHHHHHHHHHHHHHHH
Confidence 9887542 2223333333 4455555444321 001 122333445554322222
Q ss_pred hHHHHH--hcCChHHHHHHhcCCCHHHHHHHHHHHHHhhcCCCCc-hhhHhcCChHHHHHhhcC
Q 005044 325 CKVHIV--QRGAVRPLIEMLQSPDVQLREMSAFALGRLAQDMHNQ-AGIAHNGGLVPLLKLLDS 385 (717)
Q Consensus 325 ~~~~l~--~~~~l~~L~~~l~~~~~~v~~~a~~~L~~l~~~~~~~-~~l~~~~~l~~L~~ll~~ 385 (717)
+-..+- -.+++..|...+..++..+...++.+|.+|......+ ..-....++..+.+++..
T Consensus 1450 fFd~L~~~L~~~l~ll~~ci~q~n~~la~ig~~~l~~li~~ng~~F~~~~W~~i~~~~~~lf~~ 1513 (1780)
T PLN03076 1450 FYPTVNPLLKKVLMLLVSFIKRPHQSLAGIGIAAFVRLMSNAGHLFSDEKWLEVVLSLKEAANA 1513 (1780)
T ss_pred HHHHHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHHHHHHHhhccCCHHHHHHHHHHHHHHHHH
Confidence 222121 1334445555556678888888999999988643332 222222344445555543
No 307
>KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism]
Probab=72.98 E-value=1.3e+02 Score=33.13 Aligned_cols=163 Identities=21% Similarity=0.138 Sum_probs=87.7
Q ss_pred CCCHHHHHHHHHHHHHhhccChhhHHHHH---hcCCHHHHHHHHcCCCHHHHHHHHHHHHHhhcCChHHHHHHHHc--CC
Q 005044 218 FTDTKVQRAAAGALRTLAFKNDENKNQIV---ECNALPTLILMLRSEDSAIHYEAVGVIGNLVHSSPNIKKEVLAA--GA 292 (717)
Q Consensus 218 ~~~~~v~~~a~~~L~~L~~~~~~~~~~~~---~~g~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~--g~ 292 (717)
.-.++.+.-|+-+|+.++.+...+-...- ...++..++..+. .++.-+..++++|.|+..+ +..++.+... ..
T Consensus 555 ~wp~~~~fPalDilRl~v~h~~~~s~~~~~~~~~~~~~~li~~~~-~~~an~ll~vR~L~N~f~~-~~g~~~~~s~~~~i 632 (745)
T KOG0301|consen 555 QWPVEMMFPALDILRLAVKHHSSNSLFCDREEGQNLVGTLIPILN-ADPANQLLVVRCLANLFSN-PAGRELFMSRLESI 632 (745)
T ss_pred cCCHHHhhhHHHHHHHHHhccchhhhhhhhhhhhHHHHhhhcccc-cchhHHHHHHHHHHHhccC-HHHHHHHHHHHHHH
Confidence 44567777788888877764332221111 1234555555555 5677788999999999765 4444444332 12
Q ss_pred hHHHHHhhccCChHHHHHHHHHHHHHhcCChhhHHHHHhcCChHHHHHHhcC-----CCHHHHHHHHHHHHHhhcCCCCc
Q 005044 293 LQPVIGLLSSCCSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQS-----PDVQLREMSAFALGRLAQDMHNQ 367 (717)
Q Consensus 293 l~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~l~~~~~l~~L~~~l~~-----~~~~v~~~a~~~L~~l~~~~~~~ 367 (717)
+..+.+.-..++..++...+....|.+.. ..+.-.+.+..+.+...+.. .+.+.....+-||++|+..+...
T Consensus 633 ~~~~~~~~s~~~knl~ia~atlaln~sv~---l~~~~~~~~~~~~l~~ai~~~~e~~~d~EA~yR~l~AlgtL~t~~~~~ 709 (745)
T KOG0301|consen 633 LDPVIEASSLSNKNLQIALATLALNYSVL---LIQDNEQLEGKEVLLSAISTLLEPVDDLEAIYRLLVALGTLMTVDASV 709 (745)
T ss_pred hhhhhhhhcccchhHHHHHHHHHHHHHHH---HHhcccccchHHHHHHHHHhhcccchhHHHHHHHHHHHHhhccccHHH
Confidence 22222222233344555444444444310 01111113444444444432 23334445667888998887777
Q ss_pred hhhHhcCChHHHHHhhcC
Q 005044 368 AGIAHNGGLVPLLKLLDS 385 (717)
Q Consensus 368 ~~l~~~~~l~~L~~ll~~ 385 (717)
..+.+.-.+..+..-+++
T Consensus 710 ~~~A~~~~v~sia~~~~~ 727 (745)
T KOG0301|consen 710 IQLAKNRSVDSIAKKLKE 727 (745)
T ss_pred HHHHHhcCHHHHHHHHHH
Confidence 777777677777666643
No 308
>KOG0413 consensus Uncharacterized conserved protein related to condensin complex subunit 1 [Function unknown]
Probab=72.15 E-value=26 Score=39.74 Aligned_cols=129 Identities=17% Similarity=0.170 Sum_probs=90.8
Q ss_pred cchHHHhHHHHHHHHhc-CChhhHHHHHhCCChHHHHHHHhccccCCCccchhHHHHHHHHHHHHHhhcCchhhhHHHhc
Q 005044 128 FEHEVEKGSAFALGLLA-VKPEHQQLIVDNGALSHLVNLLKRHMDSNCSRAVNSVIRRAADAITNLAHENSSIKTRVRME 206 (717)
Q Consensus 128 ~~~~v~~~a~~~L~~l~-~~~~~~~~~~~~~~i~~L~~lL~~~~~~~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~ 206 (717)
+.+.++.++.-+|+++| .+.+..+ ..+|.+++-|..++.. .++...+-+++.+|.... +.-.
T Consensus 943 ~~~~vra~~vvTlakmcLah~~LaK-----r~~P~lvkeLe~~~~~-------aiRnNiV~am~D~C~~YT-----am~d 1005 (1529)
T KOG0413|consen 943 FSDKVRAVGVVTLAKMCLAHDRLAK-----RLMPMLVKELEYNTAH-------AIRNNIVLAMGDICSSYT-----AMTD 1005 (1529)
T ss_pred cchHHHHHHHHHHHHHHhhhhHHHH-----HHHHHHHHHHHhhhHH-------HHhcceeeeehhhHHHHH-----HHHH
Confidence 35679999999999999 5555432 3478888888766542 666777777788886332 2333
Q ss_pred CCcHHHHHhhcCCCHHHHHHHHHHHHHhhccChhhHHHHHhc-C-CHHHHHHHHcCCCHHHHHHHHHHHHHhhcC
Q 005044 207 GGIPPLVELLEFTDTKVQRAAAGALRTLAFKNDENKNQIVEC-N-ALPTLILMLRSEDSAIHYEAVGVIGNLVHS 279 (717)
Q Consensus 207 ~~i~~L~~ll~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~-g-~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~ 279 (717)
..+|.+...|.++++-+|+.+.-.|.+|... .+++- | ++-.++-.+-+.+++++..|=..++.+...
T Consensus 1006 ~YiP~I~~~L~Dp~~iVRrqt~ilL~rLLq~------~~vKw~G~Lf~Rf~l~l~D~~edIr~~a~f~~~~vL~~ 1074 (1529)
T KOG0413|consen 1006 RYIPMIAASLCDPSVIVRRQTIILLARLLQF------GIVKWNGELFIRFMLALLDANEDIRNDAKFYISEVLQS 1074 (1529)
T ss_pred HhhHHHHHHhcCchHHHHHHHHHHHHHHHhh------hhhhcchhhHHHHHHHHcccCHHHHHHHHHHHHHHHhh
Confidence 5789999999999999999999999999851 22332 2 222233334467888999888888887643
No 309
>KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism]
Probab=70.59 E-value=1.7e+02 Score=32.13 Aligned_cols=159 Identities=14% Similarity=0.132 Sum_probs=87.5
Q ss_pred HHHHHHHHHHHHHhhcCchhhhHHHhc---CCcHHHHHhhcCCCHHHHHHHHHHHHHhhccChhhHHHHHhc--CCHHHH
Q 005044 180 SVIRRAADAITNLAHENSSIKTRVRME---GGIPPLVELLEFTDTKVQRAAAGALRTLAFKNDENKNQIVEC--NALPTL 254 (717)
Q Consensus 180 ~~~~~a~~~L~~l~~~~~~~~~~~~~~---~~i~~L~~ll~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~--g~i~~L 254 (717)
+++..|+.+|+-+..++..+...+... ..+..++..+. .++..+..++++|.|+-. ++..++.+... .++..+
T Consensus 559 ~~~fPalDilRl~v~h~~~~s~~~~~~~~~~~~~~li~~~~-~~~an~ll~vR~L~N~f~-~~~g~~~~~s~~~~i~~~~ 636 (745)
T KOG0301|consen 559 EMMFPALDILRLAVKHHSSNSLFCDREEGQNLVGTLIPILN-ADPANQLLVVRCLANLFS-NPAGRELFMSRLESILDPV 636 (745)
T ss_pred HHhhhHHHHHHHHHhccchhhhhhhhhhhhHHHHhhhcccc-cchhHHHHHHHHHHHhcc-CHHHHHHHHHHHHHHhhhh
Confidence 667778888887777555444333222 23344444443 567888899999999987 47666666543 122222
Q ss_pred HHHHcCCCHHHHHHHHHHHHHhhcCChHHHHHHHHcCChHHHHHhhccC-----ChHHHHHHHHHHHHHhcCChhhHHHH
Q 005044 255 ILMLRSEDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLSSC-----CSESQREAALLLGQFAATDSDCKVHI 329 (717)
Q Consensus 255 ~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~l~~L~~ll~~~-----~~~~~~~a~~~L~~l~~~~~~~~~~l 329 (717)
...-..++..++........|++.. ..+.-.+.++.+.+..++... +-+.....+.+|++++..+ .....+
T Consensus 637 ~~~~s~~~knl~ia~atlaln~sv~---l~~~~~~~~~~~~l~~ai~~~~e~~~d~EA~yR~l~AlgtL~t~~-~~~~~~ 712 (745)
T KOG0301|consen 637 IEASSLSNKNLQIALATLALNYSVL---LIQDNEQLEGKEVLLSAISTLLEPVDDLEAIYRLLVALGTLMTVD-ASVIQL 712 (745)
T ss_pred hhhhcccchhHHHHHHHHHHHHHHH---HHhcccccchHHHHHHHHHhhcccchhHHHHHHHHHHHHhhcccc-HHHHHH
Confidence 2222234456665555555554321 111122245566666555432 2234455667888887543 333445
Q ss_pred HhcCChHHHHHHhcC
Q 005044 330 VQRGAVRPLIEMLQS 344 (717)
Q Consensus 330 ~~~~~l~~L~~~l~~ 344 (717)
.+.--+..+.+-+++
T Consensus 713 A~~~~v~sia~~~~~ 727 (745)
T KOG0301|consen 713 AKNRSVDSIAKKLKE 727 (745)
T ss_pred HHhcCHHHHHHHHHH
Confidence 555556667766654
No 310
>KOG3840 consensus Uncharaterized conserved protein, contains BTB/POZ domain [General function prediction only]
Probab=68.81 E-value=7 Score=37.44 Aligned_cols=86 Identities=20% Similarity=0.340 Sum_probs=61.6
Q ss_pred CCccEEEEEcCeEeehhHHHHhhccH-HHHHhhcCCCC---CCCCcceEcC-CCCHHHHHHHHHHHhcCccccc-hhhHH
Q 005044 548 TLSDVTFLVEGRRFYAHRICLLASSD-AFRAMFDGGYR---EKDARDIEIP-NIRWEVFELMMRFIYTGSVDVT-LDIAQ 621 (717)
Q Consensus 548 ~~~Dv~~~~~~~~~~~h~~il~~~s~-~f~~~~~~~~~---e~~~~~i~l~-~~~~~~~~~~l~~~Yt~~~~~~-~~~~~ 621 (717)
...-++..+++..|.+.+.+|.++-. ..-.||.+++. .+..++.++. +++..+|+.+|+|--+|.+..+ .-.+.
T Consensus 94 ~~~~~t~lvd~~rf~v~q~llt~~p~Tmlg~mf~~g~~f~~pNErgEyeVAdGi~s~vFRAILdYYksG~iRCP~~vSvp 173 (438)
T KOG3840|consen 94 EGDKVCLLVDQTRFLVSQRLLTSKPDTMLGRMFSMGADLVSPNERDEFEVADGMTSSCFRAILDYYQSGTMRCPSSVSVS 173 (438)
T ss_pred CCcceEEEeeeEEEEeeeeeecCCcchhhhhhhcccccccCCCcCCceehhcchhHHHHHHHHHHHhcCceeCCCCCchH
Confidence 33346677788888888888875432 34566766542 2233466664 6999999999999999998754 45688
Q ss_pred HHHHHHHhhChH
Q 005044 622 DLLRAADQYLLE 633 (717)
Q Consensus 622 ~ll~~A~~~~~~ 633 (717)
++-+++|++.++
T Consensus 174 ELrEACDYLlip 185 (438)
T KOG3840|consen 174 ELREACDYLLVP 185 (438)
T ss_pred HHHhhcceEEee
Confidence 888899888764
No 311
>KOG2005 consensus 26S proteasome regulatory complex, subunit RPN1/PSMD2 [Posttranslational modification, protein turnover, chaperones]
Probab=68.20 E-value=1.6e+02 Score=32.31 Aligned_cols=108 Identities=19% Similarity=0.146 Sum_probs=70.2
Q ss_pred hHHHHHhhcCCChhHHHHHHHHHHhccCCCcchHHHHHhcCccccccchhHHhhhHHHHHHHHHHHHHHhhhchHHHHHH
Q 005044 376 LVPLLKLLDSKNGSLQHNAAFALYGLADNEDNVADFIRVGGVQKLQDGEFIVQATKDCVAKTLKRLEEKIHGRVLNHLLY 455 (717)
Q Consensus 376 l~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~l~~~~~i~~L~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~L~~ 455 (717)
+..+-.+++-+++.+|+..=.++.-++-+.+.. .++..|-+
T Consensus 642 lR~f~h~l~yge~~iRravPLal~llsvSNPq~---------------------------------------~vlDtLsk 682 (878)
T KOG2005|consen 642 LRHFGHLLHYGEPHIRRAVPLALGLLSVSNPQV---------------------------------------NVLDTLSK 682 (878)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHhhhccCCCcc---------------------------------------hHHHHHHH
Confidence 444566777889999988888888886544331 25667888
Q ss_pred HHhhcchhHHHHHHHHHHhccCCCCCceeeecCCCHHHHHHHhc-CCCchhhhhhHHHHHHhhhcccccCc
Q 005044 456 LMRVAEKGVQRRVALALAHLCSPDDQRTIFIDGGGLELLLGLLG-STNPKQQLDGAVALFKLANKATTLSS 525 (717)
Q Consensus 456 ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~~~~~~l~~L~~ll~-~~~~~v~~~a~~~l~~L~~~~~~~~~ 525 (717)
+.++.+.++..+++.+++-+-.+..+.+. .+.+..|.+.-. +.+.-.-...+.-|..|.+...+.+|
T Consensus 683 ~shd~D~eva~naIfamGLiGAGTnNARl---a~mLrqlaSYyyKd~~~Lf~vriAQGL~hlGKGtltl~p 750 (878)
T KOG2005|consen 683 FSHDGDLEVAMNAIFAMGLIGAGTNNARL---AQMLRQLASYYYKDSKALFVVRIAQGLVHLGKGTLTLSP 750 (878)
T ss_pred hccCcchHHHHHHHHHhccccCCcchHHH---HHHHHHHHHHHhccchhHHHHHHHHHHHHhcCCceeccc
Confidence 99999999999999999999777665543 233344433322 22222233455666667666555443
No 312
>cd03561 VHS VHS domain family; The VHS domain is present in Vps27 (Vacuolar Protein Sorting), Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and STAM (Signal Transducing Adaptor Molecule). It has a superhelical structure similar to that of the ARM (Armadillo) repeats and is present at the N-termini of proteins involved in intracellular membrane trafficking. There are four general groups of VHS domain containing proteins based on their association with other domains. The first group consists of proteins of the STAM/EAST/Hbp family which has the domain composition VHS-SH3-ITAM. The second consists of proteins with a FYVE domain C-terminal to VHS. The third consists of GGA proteins with a domain composition VHS-GAT (GGA and TOM)-GAE (gamma-adaptin ear) domain. The fourth consists of proteins with a VHS domain alone or with domains other than those mentioned above. In GGA proteins, VHS domains are involved in cargo recognition in trans-Golgi, thereby having a general me
Probab=68.19 E-value=65 Score=27.55 Aligned_cols=73 Identities=12% Similarity=0.116 Sum_probs=59.1
Q ss_pred ChHHHHHhhccCChHHHHHHHHHHHHHhcCChh-hHHHHHhcCChHHHHHHhcC---CCHHHHHHHHHHHHHhhcCC
Q 005044 292 ALQPVIGLLSSCCSESQREAALLLGQFAATDSD-CKVHIVQRGAVRPLIEMLQS---PDVQLREMSAFALGRLAQDM 364 (717)
Q Consensus 292 ~l~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~-~~~~l~~~~~l~~L~~~l~~---~~~~v~~~a~~~L~~l~~~~ 364 (717)
++..|.+-|.++++.++..|+.+|..+..+... +...+....++..|+.++.. .++.|+..++..+.+++..-
T Consensus 38 a~raL~krl~~~n~~vql~AL~lLd~~vkNcg~~f~~~i~s~~fl~~l~~l~~~~~~~~~~Vk~kil~ll~~W~~~f 114 (133)
T cd03561 38 AARAIRKKIKYGNPHVQLLALTLLELLVKNCGKPFHLQVADKEFLLELVKIAKNSPKYDPKVREKALELILAWSESF 114 (133)
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHHHHhCChHHHHHHhhHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHh
Confidence 466778888889999999999999988776544 66677777888889999865 47899999999999988643
No 313
>KOG0392 consensus SNF2 family DNA-dependent ATPase domain-containing protein [Transcription]
Probab=67.71 E-value=1.3e+02 Score=35.83 Aligned_cols=179 Identities=13% Similarity=0.102 Sum_probs=102.1
Q ss_pred hHHHHHHHHHHHHHhhcCchhhhHHHhcCCcHHHHHhhcCCCHHHHHHHHHHHHHhhccChhhHHHHHhcCCHHHHHHHH
Q 005044 179 NSVIRRAADAITNLAHENSSIKTRVRMEGGIPPLVELLEFTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILML 258 (717)
Q Consensus 179 ~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~g~i~~L~~ll 258 (717)
..+++.++++|..+..+-.... + ...+..+.+++..++++++...+..+........+....+. ..+++..+..|
T Consensus 143 apVre~caq~L~~~l~~~~~s~--~--~~~~~il~q~~~q~~w~ir~Ggll~iky~~air~d~l~~~~-~~vl~~~i~~L 217 (1549)
T KOG0392|consen 143 APVREACAQALGAYLKHMDESL--I--KETLDILLQMLRQPNWEIRHGGLLGIKYNVAIRQDLLFQLL-NLVLDFVIEGL 217 (1549)
T ss_pred hhhHHHHHHHHHHHHHhhhhHh--h--HHHHHHHHHHHcCcchhheechHHHHHHHHHHHHHHHHHHH-HHHHHHHHhhh
Confidence 3788999999988876322211 1 12456778888888888877666665554421111111111 23567777888
Q ss_pred cCCCHHHHHHHHHHHHHhhcCChHH-HHHHHHcCChHHHHHhhccCCh--HHHHHHHHHHHHHhcCChh--h-HHHHHhc
Q 005044 259 RSEDSAIHYEAVGVIGNLVHSSPNI-KKEVLAAGALQPVIGLLSSCCS--ESQREAALLLGQFAATDSD--C-KVHIVQR 332 (717)
Q Consensus 259 ~~~~~~v~~~a~~~L~~l~~~~~~~-~~~~~~~g~l~~L~~ll~~~~~--~~~~~a~~~L~~l~~~~~~--~-~~~l~~~ 332 (717)
.+.+.+++..|+..+..++...... .+.+ ..++..+...+..-+. .-.......+..++...+. . ...-.+.
T Consensus 218 ~ds~ddv~~~aa~~l~~~~s~~v~l~~~~i--~~lv~~l~~~l~~lddl~~s~~si~~ll~~l~~~~evl~l~~~~n~~~ 295 (1549)
T KOG0392|consen 218 EDSDDDVRSVAAQFLVPAPSIQVKLMVQKI--AKLVHTLWSFLLELDDLSSSTASIMHLLDELCIENEVLDLFEQQNLEV 295 (1549)
T ss_pred hhcchHHHHHHHHHhhhhhHHHHhhhHhHH--HHHHHHHHHHHHHhhhcchhhHHHHHHHHHHhhhHHHHHHHHHhhhhh
Confidence 8899999999999888775432111 1111 1223333333322111 1111122233344332211 1 1112235
Q ss_pred CChHHHHHHhcCCCHHHHHHHHHHHHHhhcCC
Q 005044 333 GAVRPLIEMLQSPDVQLREMSAFALGRLAQDM 364 (717)
Q Consensus 333 ~~l~~L~~~l~~~~~~v~~~a~~~L~~l~~~~ 364 (717)
|++|.+...+++.-..++.+++..+..|....
T Consensus 296 ~Lvp~~~p~l~~~i~sv~~a~l~~l~~lle~~ 327 (1549)
T KOG0392|consen 296 GLVPRLWPFLRHTISSVRRAALETLAMLLEAD 327 (1549)
T ss_pred ccchhhHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 88999999999888889999999999988643
No 314
>PLN03076 ARF guanine nucleotide exchange factor (ARF-GEF); Provisional
Probab=67.66 E-value=3.5e+02 Score=34.55 Aligned_cols=132 Identities=9% Similarity=0.087 Sum_probs=80.7
Q ss_pred HHHhHHHHHHHHhc----CChhhHHHHHhCCChHHHHHHHhccccCCCccchhHHHHHHHHHHHHHhhcCchhhhHHHhc
Q 005044 131 EVEKGSAFALGLLA----VKPEHQQLIVDNGALSHLVNLLKRHMDSNCSRAVNSVIRRAADAITNLAHENSSIKTRVRME 206 (717)
Q Consensus 131 ~v~~~a~~~L~~l~----~~~~~~~~~~~~~~i~~L~~lL~~~~~~~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~ 206 (717)
.+...|+..|..++ ..++....-.+...+.++..++...... ++++..+.++.++...... -+..
T Consensus 1152 ~va~fAidsLrQLs~kfle~eEL~~f~FQkefLkPfe~im~~s~~~-------eVrE~ILeCv~qmI~s~~~----nIkS 1220 (1780)
T PLN03076 1152 SIAIFAMDSLRQLSMKFLEREELANYNFQNEFMKPFVIVMRKSNAV-------EIRELIIRCVSQMVLSRVN----NVKS 1220 (1780)
T ss_pred hHHHHHHHHHHHHHHHhcchhhhhchhHHHHHHHHHHHHHHhcCch-------HHHHHHHHHHHHHHHHHHh----hhhc
Confidence 78888888888887 2333222223345677788877755443 8999999999998763322 1223
Q ss_pred CCcHHHHHhhc----CCCHHHHHHHHHHHHHhhccChhh-----HHHHHhcCCHHHHHHHHcCC-CHHHHHHHHHHHHHh
Q 005044 207 GGIPPLVELLE----FTDTKVQRAAAGALRTLAFKNDEN-----KNQIVECNALPTLILMLRSE-DSAIHYEAVGVIGNL 276 (717)
Q Consensus 207 ~~i~~L~~ll~----~~~~~v~~~a~~~L~~L~~~~~~~-----~~~~~~~g~i~~L~~ll~~~-~~~v~~~a~~~L~~l 276 (717)
|.+.+..++. +.++.+...|..++..+..+.-.. ...+. .++..|..+.+.. +.++-..|+..|+++
T Consensus 1221 -GWktIF~VLs~aa~d~~e~iV~lAFetl~~I~~d~f~~l~~~~~~~F~--DlV~cL~~Fa~q~~~~nISL~AI~lL~~~ 1297 (1780)
T PLN03076 1221 -GWKSMFMVFTTAAYDDHKNIVLLAFEIIEKIIREYFPYITETETTTFT--DCVNCLIAFTNSRFNKDISLNAIAFLRFC 1297 (1780)
T ss_pred -CcHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHhhhhhccccchhHHH--HHHHHHHHHHhCcCcccccHHHHHHHHHH
Confidence 4555655553 456888888888888776421110 11222 2455566666543 466777777777765
No 315
>cd03569 VHS_Hrs_Vps27p VHS domain family, Hrs and Vps27p subfamily; composed of Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and its yeast homolog Vps27p (vacuolar protein sorting). The VHS domain, an essential part of Hrs/Vps27p, has a superhelical structure similar to the structure of ARM (Armadillo) repeats and is present at the N-termini of proteins. Hrs also contains a FYVE (Fab1p, YOTB, Vac1p, and EEA1) zinc finger domain C-terminal to VHS, as well as two coiled-coil domains. Hrs has been proposed to play a role in at least three vesicle trafficking events: exocytosis, endocytosis, and endosome to lysosome trafficking. Hrs is involved in promoting rapid recycling of endocytosed signaling receptors to the plasma membrane.
Probab=66.81 E-value=86 Score=27.21 Aligned_cols=71 Identities=11% Similarity=0.101 Sum_probs=57.7
Q ss_pred CCcHHHHHhhcCCCHHHHHHHHHHHHHhhccC-hhhHHHHHhcCCHHHHHHHHc-CCCHHHHHHHHHHHHHhh
Q 005044 207 GGIPPLVELLEFTDTKVQRAAAGALRTLAFKN-DENKNQIVECNALPTLILMLR-SEDSAIHYEAVGVIGNLV 277 (717)
Q Consensus 207 ~~i~~L~~ll~~~~~~v~~~a~~~L~~L~~~~-~~~~~~~~~~g~i~~L~~ll~-~~~~~v~~~a~~~L~~l~ 277 (717)
.++..|.+-+.++++.++..|+..|-.++.+. ......+...+.+..|.+++. ..++.|+..++..+..-+
T Consensus 41 ~a~ral~krl~~~n~~vql~AL~LLe~~vkNCG~~fh~evas~~fl~~l~~l~~~~~~~~Vk~kil~li~~W~ 113 (142)
T cd03569 41 YAMRALKKRLLSKNPNVQLYALLLLESCVKNCGTHFHDEVASREFMDELKDLIKTTKNEEVRQKILELIQAWA 113 (142)
T ss_pred HHHHHHHHHHcCCChHHHHHHHHHHHHHHHHCCHHHHHHHhhHHHHHHHHHHHcccCCHHHHHHHHHHHHHHH
Confidence 35668888888999999999999999998752 456677788889999999887 467789999888887764
No 316
>PF12830 Nipped-B_C: Sister chromatid cohesion C-terminus
Probab=64.56 E-value=1.2e+02 Score=27.90 Aligned_cols=144 Identities=15% Similarity=0.124 Sum_probs=84.3
Q ss_pred ChHHHHHHHhccccCCCccchhHHHHHHHHHHHHHhhcCchhhhHHHhcCCcHHHHHhhcCCCHHHHHHHHHHHHHhhcc
Q 005044 158 ALSHLVNLLKRHMDSNCSRAVNSVIRRAADAITNLAHENSSIKTRVRMEGGIPPLVELLEFTDTKVQRAAAGALRTLAFK 237 (717)
Q Consensus 158 ~i~~L~~lL~~~~~~~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~L~~~ 237 (717)
.++.++++.-+.+. .++..|+.++..+....--+.. .++|.++.+..++++.++..|...+..+...
T Consensus 9 yl~~Il~~~~~~~~--------~vr~~Al~~l~~il~qGLvnP~-----~cvp~lIAL~ts~~~~ir~~A~~~l~~l~eK 75 (187)
T PF12830_consen 9 YLKNILELCLSSDD--------SVRLAALQVLELILRQGLVNPK-----QCVPTLIALETSPNPSIRSRAYQLLKELHEK 75 (187)
T ss_pred HHHHHHHHHhCCCH--------HHHHHHHHHHHHHHhcCCCChH-----HHHhHhhhhhCCCChHHHHHHHHHHHHHHHH
Confidence 35566666555554 8888899988877764332222 2689999999999999999999999999875
Q ss_pred ChhhHHHHHhcCCHHHHHHH---HcCCCH-HH---HHHHHHHHHHhhcCChHHHHHHHHcCChHHHHHhhccC-------
Q 005044 238 NDENKNQIVECNALPTLILM---LRSEDS-AI---HYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLSSC------- 303 (717)
Q Consensus 238 ~~~~~~~~~~~g~i~~L~~l---l~~~~~-~v---~~~a~~~L~~l~~~~~~~~~~~~~~g~l~~L~~ll~~~------- 303 (717)
.+.....-...| +..-..+ +..+.. .. ...-+..+..+..++...+..+ +..+++.+...
T Consensus 76 ~~s~v~~~~~~g-i~~af~~~~~l~~~~~~~~~~~~~~~l~~ly~ll~~~r~~R~~F-----l~~l~k~f~~~~~~~~~~ 149 (187)
T PF12830_consen 76 HESLVESRYSEG-IRLAFDYQRRLSSDSRGARRGPPSAFLSRLYSLLRSNRKSRRKF-----LKSLLKQFDFDLTKLSSE 149 (187)
T ss_pred hHHHHHHHHHHH-HHHHHHHHHHhcCCccccccccchHHHHHHHHHHhcccHhHHHH-----HHHHHHHHHhhccccccc
Confidence 444333222222 3322222 212111 11 4555666666666544444443 45555555443
Q ss_pred -ChHHHHHHHHHHHHHhc
Q 005044 304 -CSESQREAALLLGQFAA 320 (717)
Q Consensus 304 -~~~~~~~a~~~L~~l~~ 320 (717)
...-......+..|++.
T Consensus 150 ~~~~~l~~~~Fla~nLA~ 167 (187)
T PF12830_consen 150 SSPSDLDFLLFLAENLAT 167 (187)
T ss_pred cchhHHHHHHHHHHHHhc
Confidence 23334445556666653
No 317
>KOG1848 consensus Uncharacterized conserved protein [Function unknown]
Probab=64.56 E-value=1.6e+02 Score=35.52 Aligned_cols=93 Identities=17% Similarity=0.237 Sum_probs=49.0
Q ss_pred HHHHHHHHHHHHHhhcCchhhhHHHhcCCcHHHHHhhcC-------CCHHHHHHHHHHHHHhhccChhhHHHHHhcCCHH
Q 005044 180 SVIRRAADAITNLAHENSSIKTRVRMEGGIPPLVELLEF-------TDTKVQRAAAGALRTLAFKNDENKNQIVECNALP 252 (717)
Q Consensus 180 ~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~-------~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~g~i~ 252 (717)
+++...+.++.++....-+ .+. .| -+.+.+++++ ....+.+.+..+|.-++.+.-.....-+-.++++
T Consensus 857 evr~~sl~~l~silet~ge---~ll-~~-w~sV~eml~s~~d~~~ekek~ivrlgf~~lrlIssDfLqSLp~sci~~lid 931 (1610)
T KOG1848|consen 857 EVRISSLEALVSILETVGE---HLL-HG-WQSVFEMLRSATDFGSEKEKKIVRLGFSCLRLISSDFLQSLPTSCILDLID 931 (1610)
T ss_pred eeeHHHHHHHHHHHhccch---hhc-cc-cHHHHHHHHHHhhccchhhhhHHHhhhhhhhhhhhcchhcCChHHHHHHHH
Confidence 6666667777776652221 111 22 4444444432 1345666777777777754322222222234556
Q ss_pred HHHHHHcC-CCHHHHHHHHHHHHHhh
Q 005044 253 TLILMLRS-EDSAIHYEAVGVIGNLV 277 (717)
Q Consensus 253 ~L~~ll~~-~~~~v~~~a~~~L~~l~ 277 (717)
.+..+.+. .|..+-..|+..+++++
T Consensus 932 tl~~fs~QktdlNISltAi~lfWtvs 957 (1610)
T KOG1848|consen 932 TLLVFSRQKTDLNISLTAIGLFWTVS 957 (1610)
T ss_pred HHHHHHhhhccccccHHHHHHHHHHH
Confidence 66665543 45666677777777763
No 318
>PF10521 DUF2454: Protein of unknown function (DUF2454); InterPro: IPR018870 Putative protein of unknown function; subunit of the ASTRA complex which is part of the chromatin remodeling machinery; similar to Schizosaccharomyces pombe (Fission yeast) Tti2p; may interact with Rsm23p [].
Probab=63.97 E-value=69 Score=31.73 Aligned_cols=70 Identities=14% Similarity=0.168 Sum_probs=47.5
Q ss_pred CHHHHHHHHcCCCHHHHHHHHHHHHHhhcCChHHH-HHHHHcCChHHHHHhhc------------cCChHHHHHHHHHHH
Q 005044 250 ALPTLILMLRSEDSAIHYEAVGVIGNLVHSSPNIK-KEVLAAGALQPVIGLLS------------SCCSESQREAALLLG 316 (717)
Q Consensus 250 ~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~-~~~~~~g~l~~L~~ll~------------~~~~~~~~~a~~~L~ 316 (717)
++|.++.++.+.+++++..++.+|..+....+... ..+...|..+.+-..+. +.+..+...+.-++.
T Consensus 120 iiP~iL~llDD~~~~~K~~G~~lL~~ll~~~~~~~~~~L~~tGl~~v~~~al~~~L~~LP~~tp~~~s~~Ll~~ay~~L~ 199 (282)
T PF10521_consen 120 IIPPILNLLDDYSPEIKIQGCQLLHHLLEKVPAAEWDILRRTGLFSVFEDALFPCLYYLPPITPEDESLELLQAAYPALL 199 (282)
T ss_pred HHhhHHHHhcCCCHHHHHHHHHHHHHHHHhCChhhhHHHHHcChHHHHHHHHHHHhhcCCCCCCchhhHHHHHHHHHHHH
Confidence 68999999999999999999999999986544321 23566776665555443 223445555555666
Q ss_pred HHh
Q 005044 317 QFA 319 (717)
Q Consensus 317 ~l~ 319 (717)
.++
T Consensus 200 ~L~ 202 (282)
T PF10521_consen 200 SLL 202 (282)
T ss_pred HHH
Confidence 653
No 319
>PF06685 DUF1186: Protein of unknown function (DUF1186); InterPro: IPR010602 This family consists of several hypothetical bacterial proteins of around 250 residues in length and is found in several Chlamydia and Anabaena species. The function of this family is unknown.
Probab=63.93 E-value=1.4e+02 Score=28.72 Aligned_cols=120 Identities=17% Similarity=0.165 Sum_probs=68.8
Q ss_pred HHHHHHHHhhhhhccccchH-----HHHHHHHHHHHHHHHhhcChhhHHHHHhCCChHHHHHhhcCCCCCccccCCCccc
Q 005044 55 LLSEVSAQVNVLNTTFSWLE-----ADRAAAKRATHVLAELAKNEEVVNWIVEGGAVPALVKHLQAPPTSEADRNLKPFE 129 (717)
Q Consensus 55 ~~~~i~~l~~~L~~~~~~~~-----~~~~~~~~a~~~L~~l~~~~~~~~~~~~~g~i~~L~~lL~~~~~~~~~~~~~~~~ 129 (717)
....+|.++..|.......+ .+......|+..|+.+ .+..++|.++++++.++.... ....
T Consensus 29 ~e~i~P~Ll~~Le~a~~~~~e~~~~~~~~~~~~a~~LLaq~----------re~~A~~~li~l~~~~~~~~~----~l~G 94 (249)
T PF06685_consen 29 REEITPELLKILEDAIERANELLDDEEYNLHFYALYLLAQF----------REERALPPLIRLFSQDDDFLE----DLFG 94 (249)
T ss_pred HHHhhHHHHHHHHHHHHhHHHhccCcchHHHHHHHHHHHHH----------hhhhhHHHHHHHHcCCcchHH----HHHc
Confidence 34556777777766543211 1111234555555533 344578999999977654100 0000
Q ss_pred hHHHhHHHHHHHHhcCChhhHHHHHhCCChHHHHHHHhccccCCCccchhHHHHHHHHHHHHHhhcCchhhhHHHh
Q 005044 130 HEVEKGSAFALGLLAVKPEHQQLIVDNGALSHLVNLLKRHMDSNCSRAVNSVIRRAADAITNLAHENSSIKTRVRM 205 (717)
Q Consensus 130 ~~v~~~a~~~L~~l~~~~~~~~~~~~~~~i~~L~~lL~~~~~~~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~ 205 (717)
..+-+....++..++ .|-++.|..++.+..... -++..|+.+|..+...++..|..+++
T Consensus 95 D~~tE~l~~ilasv~-----------~G~~~~L~~li~~~~~~~------yvR~aa~~aL~~l~~~~~~~Re~vi~ 153 (249)
T PF06685_consen 95 DFITEDLPRILASVG-----------DGDIEPLKELIEDPDADE------YVRMAAISALAFLVHEGPISREEVIQ 153 (249)
T ss_pred chhHhHHHHHHHHHh-----------CCCHHHHHHHHhCCcHHH------HHHHHHHHHHHHHHHcCCCCHHHHHH
Confidence 012233333343333 455788888888765432 67888999999999988877776653
No 320
>PF14631 FancD2: Fanconi anaemia protein FancD2 nuclease; PDB: 3S4W_B.
Probab=62.58 E-value=3.9e+02 Score=33.37 Aligned_cols=130 Identities=14% Similarity=0.096 Sum_probs=67.4
Q ss_pred HHcCCCHHHHHHHHHHHHHhhcCChHHHHHHHHcCChHHHHHhhccCChHHHHHHHHHHHHHhcCChhhHHHHHhcCChH
Q 005044 257 MLRSEDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLSSCCSESQREAALLLGQFAATDSDCKVHIVQRGAVR 336 (717)
Q Consensus 257 ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~l~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~l~~~~~l~ 336 (717)
++++.++.++..+......+....+. ..+..++..|+..+.++...-...|+.+|..++...+...... ...+.
T Consensus 443 Ll~S~e~~v~~FG~~~Y~~lF~~fds----~~qqeVv~~Lvthi~sg~~~ev~~aL~vL~~L~~~~~~~l~~f--a~~l~ 516 (1426)
T PF14631_consen 443 LLRSKEPSVREFGSHLYKYLFKEFDS----YCQQEVVGALVTHIGSGNSQEVDAALDVLCELAEKNPSELQPF--ATFLK 516 (1426)
T ss_dssp HHTSSSHHHHHHHHHHHHHHHHSS-H----HHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHH-HHHHHHT--HHHHH
T ss_pred HHhCCCHHHHHHHHHHHHHHHhhccc----hhHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhccHHHHHHH--HHHHH
Confidence 45678888888888877777554332 1223356778888877666555688889999985444332221 22344
Q ss_pred HHHHHhcCCCHHHHHHHHHHHHHhhcCCCCchhhHhcCChHHHHHhhcCCChhHHH
Q 005044 337 PLIEMLQSPDVQLREMSAFALGRLAQDMHNQAGIAHNGGLVPLLKLLDSKNGSLQH 392 (717)
Q Consensus 337 ~L~~~l~~~~~~v~~~a~~~L~~l~~~~~~~~~l~~~~~l~~L~~ll~~~~~~v~~ 392 (717)
.++..+..-+..-.......|+.++........-+.....-.+-+.+.+.+...+.
T Consensus 517 giLD~l~~Ls~~qiR~lf~il~~La~~~~~~~s~i~del~ivIRKQLss~~~~~K~ 572 (1426)
T PF14631_consen 517 GILDYLDNLSLQQIRKLFDILCTLAFSDSSSSSSIQDELHIVIRKQLSSSNPKYKR 572 (1426)
T ss_dssp GGGGGGGG--HHHHHHHHHHHHHHHHHHSS---HHHHHHHHHHHHHHT-SSHHHHH
T ss_pred HHHHHHhcCCHHHHHHHHHHHHHHhcCCcccchhhHHHHHHHHHHhhcCCcHHHHH
Confidence 45555554333333345677777774332111112222222233455566655544
No 321
>KOG0413 consensus Uncharacterized conserved protein related to condensin complex subunit 1 [Function unknown]
Probab=62.23 E-value=46 Score=37.91 Aligned_cols=129 Identities=16% Similarity=0.230 Sum_probs=88.7
Q ss_pred HHHHHHHHHHHHHhhcCChHHHHHHHHcCChHHHHHhhccCC-hHHHHHHHHHHHHHhcCChhhHHHHHhcCChHHHHHH
Q 005044 263 SAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLSSCC-SESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEM 341 (717)
Q Consensus 263 ~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~l~~L~~ll~~~~-~~~~~~a~~~L~~l~~~~~~~~~~l~~~~~l~~L~~~ 341 (717)
+.++..+.-++++++..++...+ ..+|.|++-|..++ ..+|.+...+++.+|..... .-...+|.+...
T Consensus 945 ~~vra~~vvTlakmcLah~~LaK-----r~~P~lvkeLe~~~~~aiRnNiV~am~D~C~~YTa-----m~d~YiP~I~~~ 1014 (1529)
T KOG0413|consen 945 DKVRAVGVVTLAKMCLAHDRLAK-----RLMPMLVKELEYNTAHAIRNNIVLAMGDICSSYTA-----MTDRYIPMIAAS 1014 (1529)
T ss_pred hHHHHHHHHHHHHHHhhhhHHHH-----HHHHHHHHHHHhhhHHHHhcceeeeehhhHHHHHH-----HHHHhhHHHHHH
Confidence 35677888889998876554422 35788888887654 56777777777777754322 234578999999
Q ss_pred hcCCCHHHHHHHHHHHHHhhcCCCCchhhHhcCCh-HHHHHhhcCCChhHHHHHHHHHHhccCCC
Q 005044 342 LQSPDVQLREMSAFALGRLAQDMHNQAGIAHNGGL-VPLLKLLDSKNGSLQHNAAFALYGLADNE 405 (717)
Q Consensus 342 l~~~~~~v~~~a~~~L~~l~~~~~~~~~l~~~~~l-~~L~~ll~~~~~~v~~~a~~~L~~l~~~~ 405 (717)
|.++++-+|..+...|.+|.... .+...|.+ -.++-.+-+.++.++..|-..+..+....
T Consensus 1015 L~Dp~~iVRrqt~ilL~rLLq~~----~vKw~G~Lf~Rf~l~l~D~~edIr~~a~f~~~~vL~~~ 1075 (1529)
T KOG0413|consen 1015 LCDPSVIVRRQTIILLARLLQFG----IVKWNGELFIRFMLALLDANEDIRNDAKFYISEVLQSE 1075 (1529)
T ss_pred hcCchHHHHHHHHHHHHHHHhhh----hhhcchhhHHHHHHHHcccCHHHHHHHHHHHHHHHhhc
Confidence 99999999999999999987632 12222322 12333345678899999988888886543
No 322
>PRK09169 hypothetical protein; Validated
Probab=61.96 E-value=4.6e+02 Score=33.95 Aligned_cols=15 Identities=20% Similarity=0.047 Sum_probs=7.9
Q ss_pred CHHHHHHHHHHHHHh
Q 005044 346 DVQLREMSAFALGRL 360 (717)
Q Consensus 346 ~~~v~~~a~~~L~~l 360 (717)
+++-..+++|+|+.+
T Consensus 413 naQ~vANaLnALsKW 427 (2316)
T PRK09169 413 NAQGVANALNALSKW 427 (2316)
T ss_pred ChHHHHHHHHHHhcC
Confidence 444445555655544
No 323
>PF14225 MOR2-PAG1_C: Cell morphogenesis C-terminal
Probab=61.86 E-value=1.6e+02 Score=28.67 Aligned_cols=172 Identities=15% Similarity=0.118 Sum_probs=95.9
Q ss_pred cHHHHHhhcCCCHHHHHHHHHHHHHhhcc-------ChhhHHHHHhcCCHHHHHHHHcCCC----HHHHHHHHHHHHHhh
Q 005044 209 IPPLVELLEFTDTKVQRAAAGALRTLAFK-------NDENKNQIVECNALPTLILMLRSED----SAIHYEAVGVIGNLV 277 (717)
Q Consensus 209 i~~L~~ll~~~~~~v~~~a~~~L~~L~~~-------~~~~~~~~~~~g~i~~L~~ll~~~~----~~v~~~a~~~L~~l~ 277 (717)
.+.+++-+.++. ....++..|..|+.. ..+.+-.+.-.+.+|.++..+.+++ ......++..|..++
T Consensus 66 q~Ll~KGL~Ss~--t~e~tl~lL~~L~~~~~~~lig~~~~rll~~~la~LP~ll~~~d~~~~i~~~~~~~~~A~~La~~a 143 (262)
T PF14225_consen 66 QPLLLKGLRSSS--TYELTLRLLSRLTPLPDDPLIGDSQSRLLFLLLALLPRLLHAFDDPNPIQPDQECIEIAEALAQVA 143 (262)
T ss_pred HHHHhCccCCCC--cHHHHHHHHHHHhcCCCccccCCCCccHHHHHHHHHHHHHHHhcccccccccHHHHHHHHHHHHHH
Confidence 344445555443 345566666666642 1112222222345677777776666 244556777777776
Q ss_pred cCChHHHHHHHHcCChHHHHHhhccC-C---hHHHHHHHHHHHHHhcCChhhHHHHHhcCChHHHHHHhcCCCHHHHHHH
Q 005044 278 HSSPNIKKEVLAAGALQPVIGLLSSC-C---SESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQSPDVQLREMS 353 (717)
Q Consensus 278 ~~~~~~~~~~~~~g~l~~L~~ll~~~-~---~~~~~~a~~~L~~l~~~~~~~~~~l~~~~~l~~L~~~l~~~~~~v~~~a 353 (717)
.... .+.+..++...... . .+-...++..|..-. .++.. ...+..|+++|.++.+.++...
T Consensus 144 ~~~~--------~~~La~il~~ya~~~fr~~~dfl~~v~~~l~~~f--~P~~~-----~~~l~~Ll~lL~n~~~w~~~~~ 208 (262)
T PF14225_consen 144 EAQG--------LPNLARILSSYAKGRFRDKDDFLSQVVSYLREAF--FPDHE-----FQILTFLLGLLENGPPWLRRKT 208 (262)
T ss_pred HhCC--------CccHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHh--CchhH-----HHHHHHHHHHHhCCcHHHHHHH
Confidence 3321 12233334333332 2 222333333333321 12222 2346779999999999999999
Q ss_pred HHHHHHhhcCCCCchhhHhcCChHHHHHhhcCCChhHHHHHHHHHHhc
Q 005044 354 AFALGRLAQDMHNQAGIAHNGGLVPLLKLLDSKNGSLQHNAAFALYGL 401 (717)
Q Consensus 354 ~~~L~~l~~~~~~~~~l~~~~~l~~L~~ll~~~~~~v~~~a~~~L~~l 401 (717)
..+|..+...-+.+.. ...+.+.++++++..+.+. .|+.+|.++
T Consensus 209 L~iL~~ll~~~d~~~~-~~~dlispllrlL~t~~~~---eAL~VLd~~ 252 (262)
T PF14225_consen 209 LQILKVLLPHVDMRSP-HGADLISPLLRLLQTDLWM---EALEVLDEI 252 (262)
T ss_pred HHHHHHHhccccCCCC-cchHHHHHHHHHhCCccHH---HHHHHHHHH
Confidence 9999999876555443 4455688899999876654 444444443
No 324
>PF06685 DUF1186: Protein of unknown function (DUF1186); InterPro: IPR010602 This family consists of several hypothetical bacterial proteins of around 250 residues in length and is found in several Chlamydia and Anabaena species. The function of this family is unknown.
Probab=61.74 E-value=1.2e+02 Score=29.33 Aligned_cols=148 Identities=22% Similarity=0.258 Sum_probs=80.0
Q ss_pred CChHHHHHhhcCCCCCccccCCCccchHHHhHHHHHHHHhcCChhhHHHHHhCCChHHHHHHHhccccCCCccchhHHHH
Q 005044 104 GAVPALVKHLQAPPTSEADRNLKPFEHEVEKGSAFALGLLAVKPEHQQLIVDNGALSHLVNLLKRHMDSNCSRAVNSVIR 183 (717)
Q Consensus 104 g~i~~L~~lL~~~~~~~~~~~~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~i~~L~~lL~~~~~~~~~~~~~~~~~ 183 (717)
-.+|.|+.+|+.......+. ....+......|+..|+.+- +..+++.++++++..+.....-..+-+.+
T Consensus 31 ~i~P~Ll~~Le~a~~~~~e~-~~~~~~~~~~~a~~LLaq~r----------e~~A~~~li~l~~~~~~~~~~l~GD~~tE 99 (249)
T PF06685_consen 31 EITPELLKILEDAIERANEL-LDDEEYNLHFYALYLLAQFR----------EERALPPLIRLFSQDDDFLEDLFGDFITE 99 (249)
T ss_pred HhhHHHHHHHHHHHHhHHHh-ccCcchHHHHHHHHHHHHHh----------hhhhHHHHHHHHcCCcchHHHHHcchhHh
Confidence 35788888886532210000 00011133445666665543 33568999999976654110000001222
Q ss_pred HHHHHHHHHhhcCchhhhHHHhcCCcHHHHHhhcCCC--HHHHHHHHHHHHHhhccChhhHHHHHhcCCHHHHHHH-HcC
Q 005044 184 RAADAITNLAHENSSIKTRVRMEGGIPPLVELLEFTD--TKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILM-LRS 260 (717)
Q Consensus 184 ~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~--~~v~~~a~~~L~~L~~~~~~~~~~~~~~g~i~~L~~l-l~~ 260 (717)
....++..++ .|-+..|.+++.+++ .-+|..|+.+|..++...+..+..+++. +..++.. +..
T Consensus 100 ~l~~ilasv~------------~G~~~~L~~li~~~~~~~yvR~aa~~aL~~l~~~~~~~Re~vi~~--f~~ll~~~l~~ 165 (249)
T PF06685_consen 100 DLPRILASVG------------DGDIEPLKELIEDPDADEYVRMAAISALAFLVHEGPISREEVIQY--FRELLNYFLER 165 (249)
T ss_pred HHHHHHHHHh------------CCCHHHHHHHHhCCcHHHHHHHHHHHHHHHHHHcCCCCHHHHHHH--HHHHHHHHhcc
Confidence 2333333333 355677888887764 5689999999999998888888887764 4444443 444
Q ss_pred CCHHHHHHHHHHHHHh
Q 005044 261 EDSAIHYEAVGVIGNL 276 (717)
Q Consensus 261 ~~~~v~~~a~~~L~~l 276 (717)
.+..+-...+..+..|
T Consensus 166 ~~~~~~~~Lv~~~~dL 181 (249)
T PF06685_consen 166 NPSFLWGSLVADICDL 181 (249)
T ss_pred CchHHHHHHHHHHHhc
Confidence 4333333333333333
No 325
>cd03569 VHS_Hrs_Vps27p VHS domain family, Hrs and Vps27p subfamily; composed of Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and its yeast homolog Vps27p (vacuolar protein sorting). The VHS domain, an essential part of Hrs/Vps27p, has a superhelical structure similar to the structure of ARM (Armadillo) repeats and is present at the N-termini of proteins. Hrs also contains a FYVE (Fab1p, YOTB, Vac1p, and EEA1) zinc finger domain C-terminal to VHS, as well as two coiled-coil domains. Hrs has been proposed to play a role in at least three vesicle trafficking events: exocytosis, endocytosis, and endosome to lysosome trafficking. Hrs is involved in promoting rapid recycling of endocytosed signaling receptors to the plasma membrane.
Probab=61.73 E-value=34 Score=29.68 Aligned_cols=72 Identities=17% Similarity=0.137 Sum_probs=59.0
Q ss_pred ChHHHHHhhccCChHHHHHHHHHHHHHhcCC-hhhHHHHHhcCChHHHHHHhcC-CCHHHHHHHHHHHHHhhcC
Q 005044 292 ALQPVIGLLSSCCSESQREAALLLGQFAATD-SDCKVHIVQRGAVRPLIEMLQS-PDVQLREMSAFALGRLAQD 363 (717)
Q Consensus 292 ~l~~L~~ll~~~~~~~~~~a~~~L~~l~~~~-~~~~~~l~~~~~l~~L~~~l~~-~~~~v~~~a~~~L~~l~~~ 363 (717)
++..|.+-|.+.++.++..|+..|..+..++ ......+...+++..|..++.. .++.|+..++..+..++..
T Consensus 42 a~ral~krl~~~n~~vql~AL~LLe~~vkNCG~~fh~evas~~fl~~l~~l~~~~~~~~Vk~kil~li~~W~~~ 115 (142)
T cd03569 42 AMRALKKRLLSKNPNVQLYALLLLESCVKNCGTHFHDEVASREFMDELKDLIKTTKNEEVRQKILELIQAWALA 115 (142)
T ss_pred HHHHHHHHHcCCChHHHHHHHHHHHHHHHHCCHHHHHHHhhHHHHHHHHHHHcccCCHHHHHHHHHHHHHHHHH
Confidence 4666777788888999999998888887653 5567778888999999999974 6889999999999998864
No 326
>cd03568 VHS_STAM VHS domain family, STAM subfamily; members include STAM (Signal Transducing Adaptor Molecule), EAST (EGFR-associated protein with SH3 and TAM domains) and Hbp (Hrs-binding protein). Collectively, they are referred to as STAM. All STAMs have at their N-termini a VHS domain, which is involved in cytokine-mediated intracellular signal transduction and has a superhelical structure similar to the structure of ARM (Armadillo) repeats, followed by a SH3 (Src homology 3) domain, a well-established protein-protein interaction domain. At the C-termini of most vertebrate STAMS, an ITAM (Immunoreceptor Tyrosine-based Activation) motif is present, which mediates the binding of HRS (hepatocyte growth factor-regulated tyrosine kinase substrate) in endocytic and exocytic machineries.
Probab=61.28 E-value=34 Score=29.75 Aligned_cols=73 Identities=15% Similarity=0.170 Sum_probs=59.8
Q ss_pred ChHHHHHhhccCChHHHHHHHHHHHHHhcCCh-hhHHHHHhcCChHHHHHHhcC-CCHHHHHHHHHHHHHhhcCC
Q 005044 292 ALQPVIGLLSSCCSESQREAALLLGQFAATDS-DCKVHIVQRGAVRPLIEMLQS-PDVQLREMSAFALGRLAQDM 364 (717)
Q Consensus 292 ~l~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~-~~~~~l~~~~~l~~L~~~l~~-~~~~v~~~a~~~L~~l~~~~ 364 (717)
++..|..-+.+.++.++..|+..|..+..++. .+...+....++..|..++.. .++.|+..++..+..++..-
T Consensus 38 a~ral~KRl~~~n~~v~l~AL~LLe~~vkNCG~~fh~evask~Fl~eL~kl~~~~~~~~Vk~kil~li~~W~~~f 112 (144)
T cd03568 38 CLKAIMKRLNHKDPNVQLRALTLLDACAENCGKRFHQEVASRDFTQELKKLINDRVHPTVKEKLREVVKQWADEF 112 (144)
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHHHHHCCHHHHHHHhhHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHHHh
Confidence 46667777888889999999998888876544 456678888999999999987 78899999999999988643
No 327
>cd03561 VHS VHS domain family; The VHS domain is present in Vps27 (Vacuolar Protein Sorting), Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and STAM (Signal Transducing Adaptor Molecule). It has a superhelical structure similar to that of the ARM (Armadillo) repeats and is present at the N-termini of proteins involved in intracellular membrane trafficking. There are four general groups of VHS domain containing proteins based on their association with other domains. The first group consists of proteins of the STAM/EAST/Hbp family which has the domain composition VHS-SH3-ITAM. The second consists of proteins with a FYVE domain C-terminal to VHS. The third consists of GGA proteins with a domain composition VHS-GAT (GGA and TOM)-GAE (gamma-adaptin ear) domain. The fourth consists of proteins with a VHS domain alone or with domains other than those mentioned above. In GGA proteins, VHS domains are involved in cargo recognition in trans-Golgi, thereby having a general me
Probab=60.44 E-value=42 Score=28.70 Aligned_cols=71 Identities=15% Similarity=0.159 Sum_probs=56.3
Q ss_pred CcHHHHHhhcCCCHHHHHHHHHHHHHhhccChh-hHHHHHhcCCHHHHHHHHcC---CCHHHHHHHHHHHHHhhc
Q 005044 208 GIPPLVELLEFTDTKVQRAAAGALRTLAFKNDE-NKNQIVECNALPTLILMLRS---EDSAIHYEAVGVIGNLVH 278 (717)
Q Consensus 208 ~i~~L~~ll~~~~~~v~~~a~~~L~~L~~~~~~-~~~~~~~~g~i~~L~~ll~~---~~~~v~~~a~~~L~~l~~ 278 (717)
++..|..-++++++.++..|+..|-.+...... ....+.....+..+++++.. .++.|+..++..+.....
T Consensus 38 a~raL~krl~~~n~~vql~AL~lLd~~vkNcg~~f~~~i~s~~fl~~l~~l~~~~~~~~~~Vk~kil~ll~~W~~ 112 (133)
T cd03561 38 AARAIRKKIKYGNPHVQLLALTLLELLVKNCGKPFHLQVADKEFLLELVKIAKNSPKYDPKVREKALELILAWSE 112 (133)
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHHHHhCChHHHHHHhhHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHHH
Confidence 456788888899999999999999999875444 55666666777889998875 477899999998887753
No 328
>KOG0392 consensus SNF2 family DNA-dependent ATPase domain-containing protein [Transcription]
Probab=60.03 E-value=1.1e+02 Score=36.22 Aligned_cols=95 Identities=16% Similarity=0.117 Sum_probs=59.7
Q ss_pred HHHHHHHHHHHHHhhcCChHHHHHHHHcCChHHHHHhhccCChHHHHHHHHHHHHHhcCChhhHHHHHhcCChHHHHHHh
Q 005044 263 SAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLSSCCSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEML 342 (717)
Q Consensus 263 ~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~l~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~l~~~~~l~~L~~~l 342 (717)
..|+..++++|..+...-... .....++.+.+++..+.++++.-.+..+....+-..+... ..-..+++..+..+
T Consensus 143 apVre~caq~L~~~l~~~~~s----~~~~~~~il~q~~~q~~w~ir~Ggll~iky~~air~d~l~-~~~~~vl~~~i~~L 217 (1549)
T KOG0392|consen 143 APVREACAQALGAYLKHMDES----LIKETLDILLQMLRQPNWEIRHGGLLGIKYNVAIRQDLLF-QLLNLVLDFVIEGL 217 (1549)
T ss_pred hhhHHHHHHHHHHHHHhhhhH----hhHHHHHHHHHHHcCcchhheechHHHHHHHHHHHHHHHH-HHHHHHHHHHHhhh
Confidence 378999999999886542221 1123577888888888787776655554433211111111 11123567777778
Q ss_pred cCCCHHHHHHHHHHHHHhhc
Q 005044 343 QSPDVQLREMSAFALGRLAQ 362 (717)
Q Consensus 343 ~~~~~~v~~~a~~~L~~l~~ 362 (717)
.+.+.+++..|+..+...+.
T Consensus 218 ~ds~ddv~~~aa~~l~~~~s 237 (1549)
T KOG0392|consen 218 EDSDDDVRSVAAQFLVPAPS 237 (1549)
T ss_pred hhcchHHHHHHHHHhhhhhH
Confidence 88888999988888877664
No 329
>PF08216 CTNNBL: Catenin-beta-like, Arm-motif containing nuclear; InterPro: IPR013180 This domain is found in eukaryotic proteins. A human nuclear protein with this domain (Q8WYA6 from SWISSPROT) is thought to have a role in apoptosis [].
Probab=59.55 E-value=11 Score=30.48 Aligned_cols=43 Identities=28% Similarity=0.363 Sum_probs=35.6
Q ss_pred HHHHHHHHHhhccChhhHHHHHhcCCHHHHHHHHcCCCHHHHHH
Q 005044 225 RAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSEDSAIHYE 268 (717)
Q Consensus 225 ~~a~~~L~~L~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~v~~~ 268 (717)
...+..+..|+. .|+....+++.|+++.|+.+|.+++.++...
T Consensus 64 d~~Ik~l~~La~-~P~LYp~lv~l~~v~sL~~LL~HeN~DIai~ 106 (108)
T PF08216_consen 64 DEEIKKLSVLAT-APELYPELVELGAVPSLLGLLSHENTDIAID 106 (108)
T ss_pred HHHHHHHHHccC-ChhHHHHHHHcCCHHHHHHHHCCCCcceehc
Confidence 455677778886 7888999999999999999999998876543
No 330
>KOG0891 consensus DNA-dependent protein kinase [Replication, recombination and repair]
Probab=59.18 E-value=5.4e+02 Score=33.88 Aligned_cols=181 Identities=20% Similarity=0.170 Sum_probs=99.7
Q ss_pred cCCCHHHHHHHHHHHHHhhccChhhHHHHHhcCCHHHHHHHHcCCCHHHHHHHHHHHHHhhcCChHHHHHHHHcCChHHH
Q 005044 217 EFTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSEDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPV 296 (717)
Q Consensus 217 ~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~l~~L 296 (717)
.++++.++......+. ...-...+..+.+..+...+.++.-.++..+...+++++..++...-.-...-.+..+
T Consensus 539 a~~~~~i~~~v~~~l~------~~~~~~laQ~~~lr~~~~al~~~~l~~~~~~~~~ig~l~~~~~a~vl~~lr~~~l~~~ 612 (2341)
T KOG0891|consen 539 ADTDPDIRIRVLSSLN------ERFDAQLAQPDLLRLLFIALHDENFAIQELATVIIGRLSSYNPAYVLPSLRKTLLELL 612 (2341)
T ss_pred cCCCcchhhhHHhhhc------cchhhhhcCchhHHHHHHHhhhhhhhhHHhHHhhccccccccHHHHhHHHHHHHHHHh
Confidence 3456666555444333 2222334455566667777888888889999999999987766432222222222222
Q ss_pred HHhhccCChHHHHHHHHHHHHHhcCChhhHHHHHhcCChHHHHHHhcCCCHHHHHHHHHHHHHhhcCCCCc-hhhHhcCC
Q 005044 297 IGLLSSCCSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQSPDVQLREMSAFALGRLAQDMHNQ-AGIAHNGG 375 (717)
Q Consensus 297 ~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~l~~~~~l~~L~~~l~~~~~~v~~~a~~~L~~l~~~~~~~-~~l~~~~~ 375 (717)
..+..+.-..+...++.-+..+....+...... -...+..++..+.+.++.+...+..++..||...... ...++ ..
T Consensus 613 s~l~~sg~~r~~~~~a~~~~~~i~~~~~~i~~~-v~~~l~~~~~~~~~~~s~~~~~~~~~~~eL~~v~g~~~~~~~~-~~ 690 (2341)
T KOG0891|consen 613 TELEFSGMARTKEESAKLLCELIISSPVLISPY-VGPILLVLLPKLQDPSSGVEKAVLETIGELCAVGGEEMVKWVD-EL 690 (2341)
T ss_pred chhhhcchHHhHHHHHHHhhHHHHHHHHHHHhh-cCchHHHHHHHHhccchhhHHHHHHHHHHHHHhccchhhhccc-hH
Confidence 233333333333333333333221112222212 2345566777778888888888999999999744321 12222 33
Q ss_pred hHHHHHhh-cCCChhHHHHHHHHHHhccCCC
Q 005044 376 LVPLLKLL-DSKNGSLQHNAAFALYGLADNE 405 (717)
Q Consensus 376 l~~L~~ll-~~~~~~v~~~a~~~L~~l~~~~ 405 (717)
+..+.+.+ ..++..-+..+.+++.++....
T Consensus 691 ~~~~~~~l~~~s~~~rr~aslk~l~~l~s~~ 721 (2341)
T KOG0891|consen 691 FSLIIKMLQDQSSLGKRLAALKALGQLESST 721 (2341)
T ss_pred HHHHHHHHHHhhhhhchhHHHHHhhhhhccc
Confidence 33344444 3455666778889999987543
No 331
>PF12074 DUF3554: Domain of unknown function (DUF3554); InterPro: IPR022716 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is typically between 287 to 356 amino acids in length. This domain is found associated with PF02985 from PFAM.
Probab=59.00 E-value=2.1e+02 Score=29.14 Aligned_cols=80 Identities=18% Similarity=0.145 Sum_probs=47.8
Q ss_pred CCHHHHHHHHHHHHHhhccChhhHHHHHhcCCHHHHHHHHcCC--CHHHHHHHHHHHHHhhcCChHHHHHHHHcCChHHH
Q 005044 219 TDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSE--DSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPV 296 (717)
Q Consensus 219 ~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~g~i~~L~~ll~~~--~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~l~~L 296 (717)
.+++-....+.++..+..+.+.....-.....-..++.++.++ ..++|..|+.++..+...++.. +...++..+
T Consensus 174 ~~~~d~~w~~~al~~~~~~~~~~~~~~~~~~~~~a~i~ll~s~~~~~~vR~~A~~~l~~l~~~~~~~----l~~~li~~l 249 (339)
T PF12074_consen 174 ASEEDLCWLLRALEALLSDHPSELSSDKSSAWAQAFIYLLCSSNVSWKVRRAALSALKKLYASNPEL----LSKSLISGL 249 (339)
T ss_pred CCHhHHHHHHHHHHHHHhcchhhhhhhHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHhChHH----HHHHHHHHH
Confidence 3455556666677666643222111111122446677888777 8899999999999997776653 333345555
Q ss_pred HHhhcc
Q 005044 297 IGLLSS 302 (717)
Q Consensus 297 ~~ll~~ 302 (717)
-+++..
T Consensus 250 ~~~l~~ 255 (339)
T PF12074_consen 250 WKWLSS 255 (339)
T ss_pred HHHHHh
Confidence 555543
No 332
>PRK09169 hypothetical protein; Validated
Probab=58.97 E-value=5.2e+02 Score=33.55 Aligned_cols=22 Identities=9% Similarity=-0.092 Sum_probs=12.3
Q ss_pred chHHHhHHHHHHHHhcCChhhH
Q 005044 129 EHEVEKGSAFALGLLAVKPEHQ 150 (717)
Q Consensus 129 ~~~v~~~a~~~L~~l~~~~~~~ 150 (717)
++.=...++++|+++-..+.++
T Consensus 413 naQ~vANaLnALsKWp~~~~c~ 434 (2316)
T PRK09169 413 NAQGVANALNALSKWPGAEACR 434 (2316)
T ss_pred ChHHHHHHHHHHhcCCCchHHH
Confidence 3344556777776665444443
No 333
>PF13001 Ecm29: Proteasome stabiliser; InterPro: IPR024372 The proteasome (or macropain) (3.4.25.1 from EC) [, , , , ] is a eukaryotic and archaeal multicatalytic proteinase complex that seems to be involved in an ATP/ubiquitin-dependent nonlysosomal proteolytic pathway. In eukaryotes the proteasome is composed of about 28 distinct subunits which form a highly ordered ring-shaped structure (20S ring) of about 700 kDa. Most proteasome subunits can be classified, on the basis on sequence similarities into two groups, alpha (A) and beta (B). Ecm29 tethers the proteasome core particle to the regulatory particle, stabilising the interaction between these two components [, , ].
Probab=58.12 E-value=1.5e+02 Score=32.23 Aligned_cols=168 Identities=20% Similarity=0.105 Sum_probs=98.1
Q ss_pred HHHHHHHHHHHHHhhcCchhhhHHHhcCCcHHHHHhhc-----------CCCHHHHHHHHHHHHHhhccChhhHHHHHhc
Q 005044 180 SVIRRAADAITNLAHENSSIKTRVRMEGGIPPLVELLE-----------FTDTKVQRAAAGALRTLAFKNDENKNQIVEC 248 (717)
Q Consensus 180 ~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~-----------~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~ 248 (717)
++...|-..|..+...-+ +...+..|..+-. ..++.+|...+..|..-.. ......
T Consensus 252 ~V~~~ae~~LKr~~~~~e-------d~~~V~~L~~Ly~G~~~~~~~~~~pa~~~lq~kIL~~L~kS~~------Aa~~~~ 318 (501)
T PF13001_consen 252 SVSDRAEDLLKRLSVSLE-------DPDLVDRLFDLYLGKGIPPENGRPPASPRLQEKILSLLSKSVI------AATSFP 318 (501)
T ss_pred hHHHHHHHHHhhcCCCCC-------CHHHHHHHHHHHHhcCCchhcCCCCCCHHHHHHHHHHHHHhHH------HHhCCc
Confidence 777777778877775311 1223445555433 2356777766655554321 000112
Q ss_pred CCHHHHHHHHcCC--CHHHHHHHHHHH---HHhhcCChH-H---HHHHHHcCChHHHHH----hhccCChHHHHHHHHHH
Q 005044 249 NALPTLILMLRSE--DSAIHYEAVGVI---GNLVHSSPN-I---KKEVLAAGALQPVIG----LLSSCCSESQREAALLL 315 (717)
Q Consensus 249 g~i~~L~~ll~~~--~~~v~~~a~~~L---~~l~~~~~~-~---~~~~~~~g~l~~L~~----ll~~~~~~~~~~a~~~L 315 (717)
.++..+...+.++ +..++..++..+ ......... . ....+..++.+.+-. --...+...|..+-.+|
T Consensus 319 ~~~~i~~~~l~~~~~~~klk~~~l~F~~~~~~~~~~~~~~~l~~l~~~i~~~g~p~~~~~~~~~~~~~~~~lR~~aYe~l 398 (501)
T PF13001_consen 319 NILQIVFDGLYSDNTNSKLKSLALQFIRGSSWIFKHISPQILKLLRPVILSQGWPLIQDSSSQSNSSEDIELRSLAYETL 398 (501)
T ss_pred cHHHHHhccccCCccccccchhcchhhhcchHHhhhcCHHHHHHHHHHHHhcCccccccccccCCCcccHHHHHHHHHHH
Confidence 3344444555555 556666776666 444332222 1 223334555555510 11223567888899999
Q ss_pred HHHhcCChhhHHHHHhcCChHHHHHHhcCCCHHHHHHHHHHHHHhhc
Q 005044 316 GQFAATDSDCKVHIVQRGAVRPLIEMLQSPDVQLREMSAFALGRLAQ 362 (717)
Q Consensus 316 ~~l~~~~~~~~~~l~~~~~l~~L~~~l~~~~~~v~~~a~~~L~~l~~ 362 (717)
+.++...+... .-+-+++..|..-|..++++++...-.+|..|+.
T Consensus 399 G~L~~~~p~l~--~~d~~li~~LF~sL~~~~~evr~sIqeALssl~~ 443 (501)
T PF13001_consen 399 GLLAKRAPSLF--SKDLSLIEFLFDSLEDESPEVRVSIQEALSSLAP 443 (501)
T ss_pred HHHHccCcccc--cccHHHHHHHHHHhhCcchHHHHHHHHHHHHHHH
Confidence 99987665542 1235678888888988899999999999999885
No 334
>PF01603 B56: Protein phosphatase 2A regulatory B subunit (B56 family); InterPro: IPR002554 Protein phosphatase 2A (PP2A) is a major intracellular protein phosphatase that regulates multiple aspects of cell growth and metabolism. The ability of this widely distributed heterotrimeric enzyme to act on a diverse array of substrates is largely controlled by the nature of its regulatory B subunit. There are multiple families of B subunits, this family is called the B56 family [].; GO: 0008601 protein phosphatase type 2A regulator activity, 0007165 signal transduction, 0000159 protein phosphatase type 2A complex; PDB: 2NYM_B 2NYL_B 2IAE_E 2NPP_B 3FGA_B 2JAK_A.
Probab=57.93 E-value=1.5e+02 Score=31.30 Aligned_cols=224 Identities=10% Similarity=0.067 Sum_probs=102.3
Q ss_pred ChHHHHHhhcCCCCCccccCCCccchHHHhHHHHHHHHhc-CChhhHHHHHhCCChHHHHHHHhccccCCCccchhHHHH
Q 005044 105 AVPALVKHLQAPPTSEADRNLKPFEHEVEKGSAFALGLLA-VKPEHQQLIVDNGALSHLVNLLKRHMDSNCSRAVNSVIR 183 (717)
Q Consensus 105 ~i~~L~~lL~~~~~~~~~~~~~~~~~~v~~~a~~~L~~l~-~~~~~~~~~~~~~~i~~L~~lL~~~~~~~~~~~~~~~~~ 183 (717)
.+..|+.++.+.++ .-|.....+|.++- .....|..+.. .....+.+++...... .-..
T Consensus 134 fi~~Ll~l~~S~D~------------rER~~lk~~l~~iy~k~~~~r~~Ir~-~i~~~~~~fi~e~~~~-------~gI~ 193 (409)
T PF01603_consen 134 FIKKLLELFDSPDP------------RERDYLKTILHRIYGKFPNLRSFIRK-SINNIFYRFIYETERH-------NGIA 193 (409)
T ss_dssp HHHHHHHTTTSSTH------------HHHHHHHHHHHHHHHH-TTTHHHHHH-HHHHHHHHHHHTTS---------STHH
T ss_pred HHHHHHHHcCCCCH------------HHHHHHHHHHHHHHHHhhhhHHHHHH-HHHHHHHHHhcCcccc-------cCHH
Confidence 45566667666555 66667777777766 34444444332 2334455555433221 2223
Q ss_pred HHHHHHHHHhhcCc-hhh---hHHHhcCCcHHHHHhhcCCC-HHHHHHHHHHHHHhhccChhhHHHHHhcCCHHHHHHHH
Q 005044 184 RAADAITNLAHENS-SIK---TRVRMEGGIPPLVELLEFTD-TKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILML 258 (717)
Q Consensus 184 ~a~~~L~~l~~~~~-~~~---~~~~~~~~i~~L~~ll~~~~-~~v~~~a~~~L~~L~~~~~~~~~~~~~~g~i~~L~~ll 258 (717)
..+.+++.+..+-. +.+ ..+. ...|+.+.+.+. ......-..++......++.....+++ .+++.=
T Consensus 194 elLeil~sii~gf~~plk~eh~~fl----~~vllPLh~~~~~~~y~~~L~~~~~~f~~kdp~l~~~~i~-----~llk~W 264 (409)
T PF01603_consen 194 ELLEILGSIINGFAVPLKEEHKQFL----RKVLLPLHKSPHLSSYHQQLSYCVVQFLEKDPSLAEPVIK-----GLLKHW 264 (409)
T ss_dssp HHHHHHHHHHTT--SS--HHHHHHH----HHTTGGGGGSTGGGGTHHHHHHHHHHHHHH-GGGHHHHHH-----HHHHHS
T ss_pred HHHHHHHHHHhccCCCCcHHHHHHH----HHHHHHHhcCCcHHHHHHHHHHHHHHHHHhCchhHHHHHH-----HHHHhC
Confidence 35555555554311 111 1111 122333333332 122333444455555444444332222 122221
Q ss_pred cCCCHHHHHHHHHHHHHhhcCChHHHHHHHHcCChHHHHHhhccCChHHHHHHHHHHHHHhcCChhhHHHHHh--cCChH
Q 005044 259 RSEDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLSSCCSESQREAALLLGQFAATDSDCKVHIVQ--RGAVR 336 (717)
Q Consensus 259 ~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~l~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~l~~--~~~l~ 336 (717)
-..++.=...-+.-+..+...-+...-.-+...+...+..++.+.+..|.+.|+..+.|- .....+.+ ..++|
T Consensus 265 P~t~s~Kev~FL~el~~il~~~~~~~f~~i~~~lf~~la~ci~S~h~qVAErAl~~w~n~-----~~~~li~~~~~~i~p 339 (409)
T PF01603_consen 265 PKTNSQKEVLFLNELEEILEVLPPEEFQKIMVPLFKRLAKCISSPHFQVAERALYFWNNE-----YFLSLISQNSRVILP 339 (409)
T ss_dssp -SS-HHHHHHHHHHHHHHHTT--HHHHHHHHHHHHHHHHHHHTSSSHHHHHHHHGGGGSH-----HHHHHHHCTHHHHHH
T ss_pred CCCCchhHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHCCH-----HHHHHHHhChHHHHH
Confidence 123333333444445555433222212222334567777888888888888877644331 11111111 12456
Q ss_pred HHHHHhcC-----CCHHHHHHHHHHHHHhhc
Q 005044 337 PLIEMLQS-----PDVQLREMSAFALGRLAQ 362 (717)
Q Consensus 337 ~L~~~l~~-----~~~~v~~~a~~~L~~l~~ 362 (717)
.+...+.. -+..++..+..++..|..
T Consensus 340 ~i~~~L~~~~~~HWn~~Vr~~a~~vl~~l~~ 370 (409)
T PF01603_consen 340 IIFPALYRNSKNHWNQTVRNLAQNVLKILME 370 (409)
T ss_dssp HHHHHHSSTTSS-SSTTHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHHHHH
Confidence 66666533 256788888877777765
No 335
>PF07707 BACK: BTB And C-terminal Kelch; InterPro: IPR011705 This domain is found associated with (IPR000210 from INTERPRO) and (IPR006652 from INTERPRO). BTB (broad-complex, tramtrack and bric a brac) is a Kelch related domain, also known as the POZ domain []. BTB proteins are divided into subgroups depending on what domain lies at the C terminus. Despite the divergence in sequences, the BTB fold is highly conserved. BTB-Kelch proteins have Kelch repeats that form a beta-propeller that can interact with actin filaments []. BTB and C-terminal Kelch (BACK) together constitute a novel conserved domain, which is thought to have a possible role in substrate orientation in Cullin3-based E3 ligase complexes. Four domains, namely the BTB domain, a kelch domain, a BACK domain, and an intervening region (IVR) make up the aryl hydrocarbon receptor (AHR); a ligand-activated transcription factor []. This entry represents the domain associated with BTB and Kelch.; PDB: 3HVE_A 2EQX_A 3I3N_A 4AP2_A 4APF_A.
Probab=57.48 E-value=14 Score=29.78 Aligned_cols=60 Identities=15% Similarity=0.274 Sum_probs=38.9
Q ss_pred HHHHHHHHhhChHhHHHHHHHHHHhcC------------ChhcHHHHHHHHHH--cCcHHHHHHHHHHHHHhHH
Q 005044 621 QDLLRAADQYLLEGLKRLCEYTIAQDI------------SLENVSSMYELSEA--FHAISLRHTCILYIMEHFD 680 (717)
Q Consensus 621 ~~ll~~A~~~~~~~l~~~c~~~l~~~i------------~~~n~~~~~~~a~~--~~~~~L~~~~~~~i~~~~~ 680 (717)
.+++..|..|+.+.|...|..++..+. +.+....++.--+. .+-..+.+.+..|+..+..
T Consensus 2 ~~i~~~A~~~~~~~L~~~~~~~i~~nf~~v~~~~~f~~L~~~~l~~iL~~~~l~v~~E~~v~~av~~W~~~~~~ 75 (103)
T PF07707_consen 2 LSIYRLAEKYGLEELAEACLRFIAKNFNEVSKSDEFLELPFDQLIEILSSDDLNVSSEDDVFEAVLRWLKHNPE 75 (103)
T ss_dssp HHHHHHHHHTT-HHHHHHHHHHHHHTHHHHTTSHHHHCS-HHHHHHHHHTSS--ECTCCCHHHHHHHHHHCTHH
T ss_pred hhHHHHHHHcChHHHHHHHHHHHHHHHHHHccchhhhcCCHHHHHHHHhccccccccHHHHHHHHHHHHHhCHH
Confidence 478999999999999999999988764 12222223221111 1234688888999886644
No 336
>PF12830 Nipped-B_C: Sister chromatid cohesion C-terminus
Probab=57.28 E-value=1.6e+02 Score=27.04 Aligned_cols=71 Identities=23% Similarity=0.238 Sum_probs=55.8
Q ss_pred CcHHHHHhhcCCCHHHHHHHHHHHHHhhccChhhHHHHHhcCCHHHHHHHHcCCCHHHHHHHHHHHHHhhcCChHH
Q 005044 208 GIPPLVELLEFTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSEDSAIHYEAVGVIGNLVHSSPNI 283 (717)
Q Consensus 208 ~i~~L~~ll~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~ 283 (717)
.++.+++++.+++..++..|+..+..+....-.+. ...+|.++.+..++++.++..|...+..+....+..
T Consensus 9 yl~~Il~~~~~~~~~vr~~Al~~l~~il~qGLvnP-----~~cvp~lIAL~ts~~~~ir~~A~~~l~~l~eK~~s~ 79 (187)
T PF12830_consen 9 YLKNILELCLSSDDSVRLAALQVLELILRQGLVNP-----KQCVPTLIALETSPNPSIRSRAYQLLKELHEKHESL 79 (187)
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHHHhcCCCCh-----HHHHhHhhhhhCCCChHHHHHHHHHHHHHHHHhHHH
Confidence 45677888889999999999999988875322111 125899999999999999999999999997665544
No 337
>PF00651 BTB: BTB/POZ domain; InterPro: IPR013069 The BTB (for BR-C, ttk and bab) [] or POZ (for Pox virus and Zinc finger) [] domain is present near the N terminus of a fraction of zinc finger (IPR007087 from INTERPRO) proteins and in proteins that contain the IPR006652 from INTERPRO motif such as Kelch and a family of pox virus proteins. The BTB/POZ domain mediates homomeric dimerisation and in some instances heteromeric dimerisation []. The structure of the dimerised PLZF BTB/POZ domain has been solved and consists of a tightly intertwined homodimer. The central scaffolding of the protein is made up of a cluster of alpha-helices flanked by short beta-sheets at both the top and bottom of the molecule []. POZ domains from several zinc finger proteins have been shown to mediate transcriptional repression and to interact with components of histone deacetylase co-repressor complexes including N-CoR and SMRT [, , ]. The POZ or BTB domain is also known as BR-C/Ttk or ZiN.; GO: 0005515 protein binding; PDB: 3M5B_A 1R28_B 3LBZ_A 3E4U_F 3BIM_B 1R2B_A 1R29_A 2VPK_A 2YY9_B 3GA1_A ....
Probab=57.15 E-value=18 Score=29.47 Aligned_cols=31 Identities=29% Similarity=0.518 Sum_probs=28.6
Q ss_pred ChhcHHHHHHHHHHcCcHHHHHHHHHHHHHh
Q 005044 648 SLENVSSMYELSEAFHAISLRHTCILYIMEH 678 (717)
Q Consensus 648 ~~~n~~~~~~~a~~~~~~~L~~~~~~~i~~~ 678 (717)
+.+++..++.+|..|+.+.|.+.|.+++.++
T Consensus 80 ~~~~~~~ll~lA~~~~~~~L~~~~~~~l~~~ 110 (111)
T PF00651_consen 80 SDENVEELLELADKLQIPELKKACEKFLQES 110 (111)
T ss_dssp -TTTHHHHHHHHHHTTBHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCcHHHHHHHHHHHHhC
Confidence 3889999999999999999999999999876
No 338
>cd03568 VHS_STAM VHS domain family, STAM subfamily; members include STAM (Signal Transducing Adaptor Molecule), EAST (EGFR-associated protein with SH3 and TAM domains) and Hbp (Hrs-binding protein). Collectively, they are referred to as STAM. All STAMs have at their N-termini a VHS domain, which is involved in cytokine-mediated intracellular signal transduction and has a superhelical structure similar to the structure of ARM (Armadillo) repeats, followed by a SH3 (Src homology 3) domain, a well-established protein-protein interaction domain. At the C-termini of most vertebrate STAMS, an ITAM (Immunoreceptor Tyrosine-based Activation) motif is present, which mediates the binding of HRS (hepatocyte growth factor-regulated tyrosine kinase substrate) in endocytic and exocytic machineries.
Probab=56.79 E-value=56 Score=28.43 Aligned_cols=93 Identities=11% Similarity=0.205 Sum_probs=66.5
Q ss_pred CCCHHHHHHHHHHHHHhhccChhhHHHHHhcCCHHHHHHHHcCCCHHHHHHHHHHHHHhhcCCh-HHHHHHHHcCChHHH
Q 005044 218 FTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSEDSAIHYEAVGVIGNLVHSSP-NIKKEVLAAGALQPV 296 (717)
Q Consensus 218 ~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~-~~~~~~~~~g~l~~L 296 (717)
.+|+.+....|..+.. ++...+ .++..|.+-+.+.++.++..|+..|-.++.+.. .....+....++..|
T Consensus 15 ~~dw~~il~icD~I~~----~~~~~k-----~a~ral~KRl~~~n~~v~l~AL~LLe~~vkNCG~~fh~evask~Fl~eL 85 (144)
T cd03568 15 SENWGLILDVCDKVKS----DENGAK-----DCLKAIMKRLNHKDPNVQLRALTLLDACAENCGKRFHQEVASRDFTQEL 85 (144)
T ss_pred CcCHHHHHHHHHHHhc----CCccHH-----HHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHCCHHHHHHHhhHHHHHHH
Confidence 4556655555554442 111111 246677788889999999999999999977543 455677778899999
Q ss_pred HHhhcc-CChHHHHHHHHHHHHHh
Q 005044 297 IGLLSS-CCSESQREAALLLGQFA 319 (717)
Q Consensus 297 ~~ll~~-~~~~~~~~a~~~L~~l~ 319 (717)
..++.. .+..|+..++..+...+
T Consensus 86 ~kl~~~~~~~~Vk~kil~li~~W~ 109 (144)
T cd03568 86 KKLINDRVHPTVKEKLREVVKQWA 109 (144)
T ss_pred HHHhcccCCHHHHHHHHHHHHHHH
Confidence 999988 67888888888777765
No 339
>PF10274 ParcG: Parkin co-regulated protein; InterPro: IPR019399 This family of proteins is transcribed anti-sense along the DNA to the Parkin gene product and the two appear to be transcribed under the same promoter. The protein has predicted alpha-helical and beta-sheet domains which suggest its function is in the ubiquitin/proteasome system []. Mutations in parkin are the genetic cause of early-onset and autosomal recessive juvenile parkinsonism.
Probab=55.97 E-value=1.6e+02 Score=26.76 Aligned_cols=80 Identities=18% Similarity=0.146 Sum_probs=54.1
Q ss_pred CCcHHHHHhhcCCCHHHHHHHHHHHHHhhccChhhHHHHHhcCCHHHHHHHHcCCCHHHHHHHHHHHHHhhcCChHHHHH
Q 005044 207 GGIPPLVELLEFTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSEDSAIHYEAVGVIGNLVHSSPNIKKE 286 (717)
Q Consensus 207 ~~i~~L~~ll~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~ 286 (717)
..+|.+++-|.......+..|...+..+.......+-.-+-..++..|-..|.+.+++|...++.+|..|+..++....+
T Consensus 38 ~~Lpif~dGL~Et~~Py~flA~~g~~dll~~~~~~kilPvlPqLI~plk~AL~tr~~~V~~~~L~~Lq~Lv~~~~~vG~a 117 (183)
T PF10274_consen 38 HYLPIFFDGLRETEHPYRFLARQGIKDLLERGGGEKILPVLPQLIIPLKRALNTRDPEVFCATLKALQQLVTSSDMVGEA 117 (183)
T ss_pred hHHHHHHhhhhccCccHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhhhhhhHH
Confidence 35677777777766666677777777776531222222222346777778889999999999999999997665554444
No 340
>PF12231 Rif1_N: Rap1-interacting factor 1 N terminal; InterPro: IPR022031 This domain family is found in eukaryotes, and is typically between 135 and 146 amino acids in length. Rif1 is a protein which interacts with Rap1 to regulate telomere length. Interaction with telomeres limits their length. The N-terminal region contains many HEAT- and ARMADILLO- type repeats. These are helical folds which form extended curved proteins or RNA interface surfaces.
Probab=55.57 E-value=2.6e+02 Score=29.03 Aligned_cols=291 Identities=15% Similarity=0.103 Sum_probs=147.2
Q ss_pred HHHHHHHHHHHhhhhhccccc----hH-HHHHHHHHHHHHHHHhhcChhhHHHHHhCC---ChHHHHHhhcCCCCCcccc
Q 005044 52 RQALLSEVSAQVNVLNTTFSW----LE-ADRAAAKRATHVLAELAKNEEVVNWIVEGG---AVPALVKHLQAPPTSEADR 123 (717)
Q Consensus 52 ~~~~~~~i~~l~~~L~~~~~~----~~-~~~~~~~~a~~~L~~l~~~~~~~~~~~~~g---~i~~L~~lL~~~~~~~~~~ 123 (717)
.......++.++++++..+.. .+ .+..+..+|++.|+.+..+++....+-..- .+...+..+.++..+.
T Consensus 30 ~~~l~~k~~~l~~~i~rDi~~~~~~~~p~~~~L~~qALkll~~~l~~~~i~~~l~~d~~~~~i~~~i~~l~~~~~~K--- 106 (372)
T PF12231_consen 30 RQALQDKMSLLLQFIQRDISSSSSKGDPFDSRLVIQALKLLGFFLYHPEIVSTLSDDFASFIIDHSIESLQNPNSPK--- 106 (372)
T ss_pred HHHHHHHHHHHHHHHHHHHhcccCCCCCcchHHHHHHHHHHHHHHccHHHHhhCChHHHHHHHHHHHHHHcCCCCCH---
Confidence 345566677777777665543 11 255578899999999887776655544322 3455566665555422
Q ss_pred CCCccchHHHhHHHHHHHHhcCChhhHHHHHhCCChHHHHHHHhccccCCCccchhHHHHHHHHHHHHHhhcCchhhhHH
Q 005044 124 NLKPFEHEVEKGSAFALGLLAVKPEHQQLIVDNGALSHLVNLLKRHMDSNCSRAVNSVIRRAADAITNLAHENSSIKTRV 203 (717)
Q Consensus 124 ~~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~i~~L~~lL~~~~~~~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~ 203 (717)
.+....+++|..=--.+. +.....+..++..+..-.+.-.. ..+....+.++.++....+.. ..
T Consensus 107 -------~i~~~~l~~ls~Q~f~~~----~~~~~~~~~l~~~l~~i~~~~~s---~si~~erL~i~~~ll~q~p~~--M~ 170 (372)
T PF12231_consen 107 -------SICTHYLWCLSDQKFSPK----IMTSDRVERLLAALHNIKNRFPS---KSIISERLNIYKRLLSQFPQQ--MI 170 (372)
T ss_pred -------HHHHHHHHHHHcCCCCCc----ccchhhHHHHHHHHHHhhccCCc---hhHHHHHHHHHHHHHHHHHHH--HH
Confidence 666667777755332222 23334455555555443321111 177888899999998766543 22
Q ss_pred HhcC-CcHHHHHhhcCCCHHHHHHHHHHHHHhhccCh---hhHHHH---Hh----cC-----CHHHHHHHHcCCCHHHHH
Q 005044 204 RMEG-GIPPLVELLEFTDTKVQRAAAGALRTLAFKND---ENKNQI---VE----CN-----ALPTLILMLRSEDSAIHY 267 (717)
Q Consensus 204 ~~~~-~i~~L~~ll~~~~~~v~~~a~~~L~~L~~~~~---~~~~~~---~~----~g-----~i~~L~~ll~~~~~~v~~ 267 (717)
...+ .++.++..+-+....++..|...+..+...-+ ...+.+ .+ .+ +.+.|..++.+.+.....
T Consensus 171 ~~~~~W~~~l~~~l~~~~k~ir~~a~~l~~~~~~~l~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~L~~mi~~~~~~~~a 250 (372)
T PF12231_consen 171 KHADIWFPILFPDLLSSAKDIRTKAISLLLEAKKCLGPNKELSKSVLEDLQRSLENGKLIQLYCERLKEMIKSKDEYKLA 250 (372)
T ss_pred HHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHhChhHHHHHHHHHHhccccccccHHHHHHHHHHHHHhCcCCcchH
Confidence 2222 56777776667677777766655554432111 111111 11 12 223355555553332222
Q ss_pred HHHHHHHHhhcCChHHHHHHHHcCChHHHHHhhccCChHHHHHHHHHHHHHhc---CChhhHHHHHhcCChHHHHHHhcC
Q 005044 268 EAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLSSCCSESQREAALLLGQFAA---TDSDCKVHIVQRGAVRPLIEMLQS 344 (717)
Q Consensus 268 ~a~~~L~~l~~~~~~~~~~~~~~g~l~~L~~ll~~~~~~~~~~a~~~L~~l~~---~~~~~~~~l~~~~~l~~L~~~l~~ 344 (717)
.-+|...-+.-+.......-.-...+...-..+.+.++.++..|..+...+.- .++........- +..++...++.
T Consensus 251 ~~iW~~~i~LL~~~~~~~w~~~n~wL~v~e~cFn~~d~~~k~~A~~aW~~liy~~~~~~~~~~k~l~l-L~~Pl~~~l~~ 329 (372)
T PF12231_consen 251 MQIWSVVILLLGSSRLDSWEHLNEWLKVPEKCFNSSDPQVKIQAFKAWRRLIYASNPNELTSPKRLKL-LCQPLSSQLRR 329 (372)
T ss_pred HHHHHHHHHHhCCchhhccHhHhHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhcCCccccHHHHHH-HHHHHHHHhCc
Confidence 22332222222322111111112234445556677888898888877666641 111111111111 22333333433
Q ss_pred -CCH----HHHHHHHHHHHHhhc
Q 005044 345 -PDV----QLREMSAFALGRLAQ 362 (717)
Q Consensus 345 -~~~----~v~~~a~~~L~~l~~ 362 (717)
... .++..+...++++..
T Consensus 330 ~~~~~~~~~~~~~ll~~l~~lly 352 (372)
T PF12231_consen 330 EKSSKTKEEVWWYLLYSLCNLLY 352 (372)
T ss_pred cccccccHHHHHHHHHHHhchHH
Confidence 223 667777777777653
No 341
>KOG1525 consensus Sister chromatid cohesion complex Cohesin, subunit PDS5 [Cell cycle control, cell division, chromosome partitioning]
Probab=55.09 E-value=1.3e+02 Score=36.38 Aligned_cols=176 Identities=13% Similarity=0.100 Sum_probs=100.6
Q ss_pred CCcHHHHHhhcCCCHHHHHHHHHHHHHhhccChhhHHHHHhcCCHHHHHHHHcCCCHHHHHHHHHHHHHhhcCChHHHHH
Q 005044 207 GGIPPLVELLEFTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSEDSAIHYEAVGVIGNLVHSSPNIKKE 286 (717)
Q Consensus 207 ~~i~~L~~ll~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~ 286 (717)
+++|.|..-|.+.+..+|..|...++.+... +...-.=-...+....+.-+.+.+.+||..++....++..+++.....
T Consensus 259 ~vip~l~~eL~se~~~~Rl~a~~lvg~~~~~-~~~~l~~~~~~~~~~fl~r~~D~~~~vR~~~v~~~~~~l~~~~~~~~~ 337 (1266)
T KOG1525|consen 259 AVIPQLEFELLSEQEEVRLKAVKLVGRMFSD-KDSQLSETYDDLWSAFLGRFNDISVEVRMECVESIKQCLLNNPSIAKA 337 (1266)
T ss_pred HHHHHHHHHHhcchHHHHHHHHHHHHHHHhc-chhhhcccchHHHHHHHHHhccCChhhhhhHHHHhHHHHhcCchhhhH
Confidence 6778888878888999999999999999863 222111001234556666777889999999999998887766654332
Q ss_pred HHHcCChHHHHHhhccCChHHHHHHHHHHHHHhcCChhhHHHHHhcCChHHHHHHhcCCCHHHHHHHHHHHHHhhcC---
Q 005044 287 VLAAGALQPVIGLLSSCCSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQSPDVQLREMSAFALGRLAQD--- 363 (717)
Q Consensus 287 ~~~~g~l~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~l~~~~~l~~L~~~l~~~~~~v~~~a~~~L~~l~~~--- 363 (717)
.. ..-.+- ..+.+++++.....++..+. -......+... ++..+.+.+.+....||..|...|..+-.+
T Consensus 338 ~~---~~~~l~--~~~~D~~~rir~~v~i~~~~--v~~~~l~~~~~-ll~~~~eR~rDKk~~VR~~Am~~LaqlYk~~~~ 409 (1266)
T KOG1525|consen 338 ST---ILLALR--ERDLDEDVRVRTQVVIVACD--VMKFKLVYIPL-LLKLVAERLRDKKIKVRKQAMNGLAQLYKNVYC 409 (1266)
T ss_pred HH---HHHHHH--hhcCChhhhheeeEEEEEee--hhHhhhhhhHH-HHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHH
Confidence 21 111111 12333444433222221111 11222223333 566667777788899999999888776642
Q ss_pred --CCCchhh-HhcCChH-HHHHhhcCCChhHH
Q 005044 364 --MHNQAGI-AHNGGLV-PLLKLLDSKNGSLQ 391 (717)
Q Consensus 364 --~~~~~~l-~~~~~l~-~L~~ll~~~~~~v~ 391 (717)
......+ .....++ .|+.++...+.+.+
T Consensus 410 ~~~~~~k~~t~~~swIp~kLL~~~y~~~~~~r 441 (1266)
T KOG1525|consen 410 LRSAGGKEITPPFSWIPDKLLHLYYENDLDDR 441 (1266)
T ss_pred hhccCcccccccccccchhHHhhHhhccccHH
Confidence 1111111 1112223 37777766655555
No 342
>cd08050 TAF6 TATA Binding Protein (TBP) Associated Factor 6 (TAF6) is one of several TAFs that bind TBP and is involved in forming Transcription Factor IID (TFIID) complex. The TATA Binding Protein (TBP) Associated Factor 6 (TAF6) is one of several TAFs that bind TBP and are involved in forming Transcription Factor IID (TFIID) complex. TFIID is one of seven General Transcription Factors (GTFs) (TFIIA, TFIIB, TFIID, TFIIE, TFIIF, and TFIID) that are involved in accurate initiation of transcription by RNA polymerase II in eukaryotes. TFIID plays an important role in the recognition of promoter DNA and assembly of the pre-initiation complex. TFIID complex is composed of the TBP and at least 13 TAFs. TAFs are named after their electrophoretic mobility in polyacrylamide gels in different species. A new, unified nomenclature has been suggested for the pol II TAFs to show the relationship between TAF orthologs and paralogs. Several hypotheses are proposed for TAFs functions such as serving as
Probab=55.04 E-value=1.3e+02 Score=30.77 Aligned_cols=139 Identities=12% Similarity=0.102 Sum_probs=75.8
Q ss_pred HHHHHHcCCCHHHHHHHHHHHHHhhcCChHHHHHHHHcCChHHHHHhhccC-------ChHHHHHHHHHHHHHhcCChhh
Q 005044 253 TLILMLRSEDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLSSC-------CSESQREAALLLGQFAATDSDC 325 (717)
Q Consensus 253 ~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~l~~L~~ll~~~-------~~~~~~~a~~~L~~l~~~~~~~ 325 (717)
.++..+.+++...+..|+..|.. ++.. ..++|.++.++.+. +.........++..|.. ++..
T Consensus 182 ~It~a~~~~~~~~r~~aL~sL~t----D~gl------~~LlPyf~~fI~~~v~~n~~~nl~~L~~lm~~v~ALl~-N~~l 250 (343)
T cd08050 182 EITEALVGSNEEKRREALQSLRT----DPGL------QQLLPYFVRFIAEGVTVNLDQNLALLIYLMRMVRALLD-NPNL 250 (343)
T ss_pred HHHHHHhCCCHHHHHHHHHHhcc----CCCc------hhhhhHHHHHHHHHHHhhhcccHHHHHHHHHHHHHHhc-CCCC
Confidence 34444545566666665555422 2222 23577777777542 34444455556666643 3333
Q ss_pred HHHHHhcCChHHHHHHhc----------CCCHHHHHHHHHHHHHhhcCCCCchhhHhcCChHHHHHhhcCC--ChhHHHH
Q 005044 326 KVHIVQRGAVRPLIEMLQ----------SPDVQLREMSAFALGRLAQDMHNQAGIAHNGGLVPLLKLLDSK--NGSLQHN 393 (717)
Q Consensus 326 ~~~l~~~~~l~~L~~~l~----------~~~~~v~~~a~~~L~~l~~~~~~~~~l~~~~~l~~L~~ll~~~--~~~v~~~ 393 (717)
.....-..++|.++..+- .+...+|..|+..|..++..-.....-+.......+.+.+.+. ......-
T Consensus 251 ~le~Ylh~Lip~vltclv~~~l~~~~~~~~h~~LRd~AA~ll~~i~~~f~~~y~~l~~ri~~tl~k~l~d~~~~~~~~YG 330 (343)
T cd08050 251 HLEPYLHQLIPSVLTCLVAKQLCSRPPDDNHWALRDYAARLLAQICRKFSTSYNTLQPRITRTLLKALLDPKKPLTTHYG 330 (343)
T ss_pred chHHhHHHHHHHHHHHhhhHhhcCCCCCchHHHHHHHHHHHHHHHHHHcCCCCCcHHHHHHHHHHHHHcCCCCCcchhhH
Confidence 222222337788877762 1345799999999999997444333333444444566555433 2233555
Q ss_pred HHHHHHhcc
Q 005044 394 AAFALYGLA 402 (717)
Q Consensus 394 a~~~L~~l~ 402 (717)
|+..|..|.
T Consensus 331 Ai~GL~~lG 339 (343)
T cd08050 331 AIVGLSALG 339 (343)
T ss_pred HHHHHHHhC
Confidence 666666553
No 343
>cd03567 VHS_GGA VHS domain family, GGA subfamily; GGA (Golgi-localized, Gamma-ear-containing, Arf-binding) comprise a subfamily of ubiquitously expressed, monomeric, motif-binding cargo/clathrin adaptor proteins. The VHS domain has a superhelical structure similar to the structure of the ARM (Armadillo) repeats and is present at the N-termini of proteins. GGA proteins have a multidomain structure consisting of an N-terminal VHS domain linked by a short proline-rich linker to a GAT (GGA and TOM) domain, which is followed by a long flexible linker to the C-terminal appendage, GAE (gamma-adaptin ear) domain. The VHS domain of GGA proteins binds to the acidic-cluster dileucine (DxxLL) motif found on the cytoplasmic tails of cargo proteins trafficked between the trans-Golgi network and the endosomal system.
Probab=54.77 E-value=61 Score=27.97 Aligned_cols=72 Identities=10% Similarity=0.038 Sum_probs=57.4
Q ss_pred ChHHHHHhhccCChHHHHHHHHHHHHHhcCC-hhhHHHHHhcCChHHHHHHhcC------CCHHHHHHHHHHHHHhhcC
Q 005044 292 ALQPVIGLLSSCCSESQREAALLLGQFAATD-SDCKVHIVQRGAVRPLIEMLQS------PDVQLREMSAFALGRLAQD 363 (717)
Q Consensus 292 ~l~~L~~ll~~~~~~~~~~a~~~L~~l~~~~-~~~~~~l~~~~~l~~L~~~l~~------~~~~v~~~a~~~L~~l~~~ 363 (717)
++..+..-+.+.++.++..|+.+|..+..+. ..+...+...+++..++.++.. .++.|+..++..+...+..
T Consensus 39 a~rai~krl~~~n~~v~l~AL~LLe~~vkNCG~~fh~evas~~Fl~el~kl~~~k~~~~~~~~~Vk~kil~li~~W~~~ 117 (139)
T cd03567 39 AVRLLAHKIQSPQEKEALQALTVLEACMKNCGERFHSEVGKFRFLNELIKLVSPKYLGSRTSEKVKTKIIELLYSWTLE 117 (139)
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHHHHHcCHHHHHHHHhHHHHHHHHHHhccccCCCCCCHHHHHHHHHHHHHHHHH
Confidence 4566777888888999988988888887544 4566778888899999999953 5788999999999888863
No 344
>smart00288 VHS Domain present in VPS-27, Hrs and STAM. Unpublished observations. Domain of unknown function.
Probab=54.47 E-value=52 Score=28.19 Aligned_cols=72 Identities=11% Similarity=0.081 Sum_probs=56.9
Q ss_pred ChHHHHHhhccCChHHHHHHHHHHHHHhcCC-hhhHHHHHhcCChHHHHHHhcCC--CHHHHHHHHHHHHHhhcC
Q 005044 292 ALQPVIGLLSSCCSESQREAALLLGQFAATD-SDCKVHIVQRGAVRPLIEMLQSP--DVQLREMSAFALGRLAQD 363 (717)
Q Consensus 292 ~l~~L~~ll~~~~~~~~~~a~~~L~~l~~~~-~~~~~~l~~~~~l~~L~~~l~~~--~~~v~~~a~~~L~~l~~~ 363 (717)
++..|.+-|.+.++.++..|+..|..+..++ ..+...+...+++..|..++... .+.|+..++..+...+..
T Consensus 38 a~r~l~krl~~~n~~v~l~AL~lLe~~vkNcg~~f~~ev~s~~fl~~L~~l~~~~~~~~~Vk~kil~li~~W~~~ 112 (133)
T smart00288 38 AVRLLKKRLNNKNPHVALLALTLLDACVKNCGSKFHLEVASKEFLNELVKLIKPKYPLPLVKKRILELIQEWADA 112 (133)
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHhHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHHHHH
Confidence 3556777788888999999999888887653 55667788888999999998763 334999999999888863
No 345
>PF01365 RYDR_ITPR: RIH domain; InterPro: IPR000699 Ryanodine and Inositol 1,4,5-trisphosphate (IP3) receptors are intracellular Ca2+-release channels. They become activated upon binding of their respective ligands, Ca2+ and IP3, opening an intrgral Ca2+ channel. Ryanodine receptor activation is a key component of muscular contraction, their activation allowing release of Ca2+ from the sarcoplasmic reticulum. Mutations in the ryanodine receptor lead to malignant hyperthermia susceptibility the and central core disease of muscle.; GO: 0005262 calcium channel activity, 0070588 calcium ion transmembrane transport, 0016020 membrane; PDB: 1N4K_A 2XOA_A 3UJ0_B 3UJ4_A 3T8S_A.
Probab=54.38 E-value=41 Score=31.43 Aligned_cols=110 Identities=18% Similarity=0.198 Sum_probs=51.7
Q ss_pred hhHHHHHhCCChHHHHHHHhccccCC----------CccchhHHHHHHHHHHHHHhhcCchhhhHHHhcCCcHHHHHhhc
Q 005044 148 EHQQLIVDNGALSHLVNLLKRHMDSN----------CSRAVNSVIRRAADAITNLAHENSSIKTRVRMEGGIPPLVELLE 217 (717)
Q Consensus 148 ~~~~~~~~~~~i~~L~~lL~~~~~~~----------~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~ 217 (717)
..++.+...|++..++.+|+...... .......+...+...|..+|.++..++..+... ++.+...+.
T Consensus 34 ~rQ~llrnl~i~~~v~~~L~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~lL~~f~~~n~~NQ~~l~~~--~~~l~~~~~ 111 (207)
T PF01365_consen 34 ERQKLLRNLGIHELVLDLLKNPFDQFQGDFKDLGDQKDSSFKELFRLCYRLLRQFCRGNRENQKYLFKH--LDFLISIFM 111 (207)
T ss_dssp HHHHHHHHTTHHHHHHHHHHHHCTS---------STGGHCHHHHHHHHHHHHHHHHTT-HHHHHHHHHH--HH-----HH
T ss_pred hhHHHHHHHHHHHHHHHHhhhhhhcccchhhhhcchhccHHHHHHHHHHHHHHHHHHhCHHHHHHHHHH--HhHHHHHHH
Confidence 45667778899999999988754432 011122677889999999999998888776642 332222222
Q ss_pred CCCHHHHHHHHHHHHHhhccChhhHHHHHhcCCHHHHHHHHcC
Q 005044 218 FTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRS 260 (717)
Q Consensus 218 ~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~g~i~~L~~ll~~ 260 (717)
......-..+..++..+..++.+....+.+. .+..++.++..
T Consensus 112 ~~~~~~~~~~~d~l~~i~~dN~~L~~~i~e~-~I~~~i~ll~~ 153 (207)
T PF01365_consen 112 QLQIGYGLGALDVLTEIFRDNPELCESISEE-HIEKFIELLRK 153 (207)
T ss_dssp CCCH-TTHHHHHHHHHHHTT-----------------------
T ss_pred HhhccCCchHHHHHHHHHHCcHHHHHHhhHH-HHHHHHHHHHH
Confidence 2111111345666777777666666666554 37778887765
No 346
>PF10274 ParcG: Parkin co-regulated protein; InterPro: IPR019399 This family of proteins is transcribed anti-sense along the DNA to the Parkin gene product and the two appear to be transcribed under the same promoter. The protein has predicted alpha-helical and beta-sheet domains which suggest its function is in the ubiquitin/proteasome system []. Mutations in parkin are the genetic cause of early-onset and autosomal recessive juvenile parkinsonism.
Probab=54.18 E-value=1.7e+02 Score=26.68 Aligned_cols=77 Identities=17% Similarity=0.121 Sum_probs=53.7
Q ss_pred CCHHHHHHHHcCCCHHHHHHHHHHHHHhhcCChHHHHHHHHcCChHHHHHhhccCChHHHHHHHHHHHHHhcCChhh
Q 005044 249 NALPTLILMLRSEDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLSSCCSESQREAALLLGQFAATDSDC 325 (717)
Q Consensus 249 g~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~l~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~ 325 (717)
-.++.+++-|+..+..-+..|...+..+.......+-.-+-..++..+...|.+.++++...++.+|..+....+..
T Consensus 38 ~~Lpif~dGL~Et~~Py~flA~~g~~dll~~~~~~kilPvlPqLI~plk~AL~tr~~~V~~~~L~~Lq~Lv~~~~~v 114 (183)
T PF10274_consen 38 HYLPIFFDGLRETEHPYRFLARQGIKDLLERGGGEKILPVLPQLIIPLKRALNTRDPEVFCATLKALQQLVTSSDMV 114 (183)
T ss_pred hHHHHHHhhhhccCccHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhhhhh
Confidence 35777788787776666777777777775541222222333567788888999999999999999999996444433
No 347
>PF08216 CTNNBL: Catenin-beta-like, Arm-motif containing nuclear; InterPro: IPR013180 This domain is found in eukaryotic proteins. A human nuclear protein with this domain (Q8WYA6 from SWISSPROT) is thought to have a role in apoptosis [].
Probab=52.42 E-value=20 Score=29.04 Aligned_cols=39 Identities=33% Similarity=0.342 Sum_probs=34.4
Q ss_pred HHHHHHHHHHhhcChhhHHHHHhCCChHHHHHhhcCCCC
Q 005044 80 AKRATHVLAELAKNEEVVNWIVEGGAVPALVKHLQAPPT 118 (717)
Q Consensus 80 ~~~a~~~L~~l~~~~~~~~~~~~~g~i~~L~~lL~~~~~ 118 (717)
....+..+..++..|+.-..+++.|+++.|+.||.+.+.
T Consensus 63 Ld~~Ik~l~~La~~P~LYp~lv~l~~v~sL~~LL~HeN~ 101 (108)
T PF08216_consen 63 LDEEIKKLSVLATAPELYPELVELGAVPSLLGLLSHENT 101 (108)
T ss_pred HHHHHHHHHHccCChhHHHHHHHcCCHHHHHHHHCCCCc
Confidence 466788888888889888889999999999999999887
No 348
>KOG2075 consensus Topoisomerase TOP1-interacting protein BTBD1 [Function unknown]
Probab=50.37 E-value=25 Score=36.47 Aligned_cols=44 Identities=11% Similarity=0.294 Sum_probs=35.5
Q ss_pred CChhcHHHHHHHHHHcCcHHHHHHHHHHHHHhHHHhcCCchhhhchh
Q 005044 647 ISLENVSSMYELSEAFHAISLRHTCILYIMEHFDKLSTRPGHSNLIQ 693 (717)
Q Consensus 647 i~~~n~~~~~~~a~~~~~~~L~~~~~~~i~~~~~~~~~~~~f~~l~~ 693 (717)
+..+|++.++..|.+|.-+.|.+.|++|+..+... ..+|..|+.
T Consensus 185 ~~~dtvi~tl~~AkKY~VpaLer~CVkflr~~l~~---~naf~~L~q 228 (521)
T KOG2075|consen 185 LAADTVITTLYAAKKYLVPALERQCVKFLRKNLMA---DNAFLELFQ 228 (521)
T ss_pred hhHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhcCC---hHHHHHHHH
Confidence 67899999999999999999999999999877432 244544443
No 349
>KOG1822 consensus Uncharacterized conserved protein [Function unknown]
Probab=49.94 E-value=6.5e+02 Score=31.99 Aligned_cols=247 Identities=16% Similarity=0.085 Sum_probs=114.4
Q ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHhhcCChHHHHHHHHcCChHHHHHhhccCChHHHH-HHHHHHHHHhcCChhhHHHH
Q 005044 251 LPTLILMLRSEDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLSSCCSESQR-EAALLLGQFAATDSDCKVHI 329 (717)
Q Consensus 251 i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~l~~L~~ll~~~~~~~~~-~a~~~L~~l~~~~~~~~~~l 329 (717)
...++..+...++..+-.+..++..++...+.. ..-.+....++.-+.+..+.+.+ --..+++.+-.........-
T Consensus 878 ~~l~~~sl~~~~p~~rc~~~ea~arLaq~v~~~---~f~a~~aq~~fdklas~~d~i~R~ghslalg~lhkyvgs~~s~q 954 (2067)
T KOG1822|consen 878 LTLIVNSLINPNPKLRCAAAEALARLAQVVGSA---PFVASLAQNSFDKLASARDPITRTGHSLALGCLHKYVGSIGSGQ 954 (2067)
T ss_pred HHHHhhhhccCChHHHHHHHHHHHHHHHhcccc---chHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHhccCCCCch
Confidence 344555666778888888888888886543211 11122344445555554443333 33334444422111111111
Q ss_pred HhcCChHHHHHHhcCC-CHHHHHHHHHHHHHhhcCCCCchhhHhcCChHHHHHhhcCCChhHHHHHHHHHHhccCCCcch
Q 005044 330 VQRGAVRPLIEMLQSP-DVQLREMSAFALGRLAQDMHNQAGIAHNGGLVPLLKLLDSKNGSLQHNAAFALYGLADNEDNV 408 (717)
Q Consensus 330 ~~~~~l~~L~~~l~~~-~~~v~~~a~~~L~~l~~~~~~~~~l~~~~~l~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~ 408 (717)
.-...+..++.+.+++ .|.|+.+++.++.-++.....-....-...+-.+..++-+..+. .......+.....+...-
T Consensus 955 hl~t~v~illal~~Ds~~p~VqtwSL~al~~i~~s~~p~~~~~ve~tlsl~~~lLls~p~~-~~ev~q~~~R~~~~~~~~ 1033 (2067)
T KOG1822|consen 955 HLNTSVSILLALATDSTSPVVQTWSLHALALILDSSGPMFRVLVEPTLSLCLKLLLSVPTS-HVEVHQCYNRCFNGDDDE 1033 (2067)
T ss_pred hcccHHHHHHHHhhcCCCchhhhhHHHHHHHHHcCCCceehhhHHHHHHHHHHHcCCCCcc-hhhhhhhhccccccchhH
Confidence 1123456677777764 56999999999988876443322222222233333444332221 111111121111111111
Q ss_pred HHHHHhcCcccccc-ch-hHHhhhHHHHHHHHHHHHHHhhhchHHHHHHHHhhcchhHHHHHHHHHHhccCCCCCceeee
Q 005044 409 ADFIRVGGVQKLQD-GE-FIVQATKDCVAKTLKRLEEKIHGRVLNHLLYLMRVAEKGVQRRVALALAHLCSPDDQRTIFI 486 (717)
Q Consensus 409 ~~l~~~~~i~~L~~-~~-~~~~~~~~~~~~~~~~l~~~~~~~~~~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~~ 486 (717)
..+...-+-+ |.. +. +..... ....+....-++..+++.++.++..+|.++.--.... +-
T Consensus 1034 ~alittlgpe-L~~N~~~d~t~~~---------------rts~la~~allls~~d~lnqa~ai~clqqlhlFapr~--~n 1095 (2067)
T KOG1822|consen 1034 DALITTLGPE-LGPNGDKDSTSTL---------------RTSCLAACALLLSHSDPLNQAAAIKCLQQLHLFAPRH--VN 1095 (2067)
T ss_pred HHHHHhcccc-cCCCCcccchhHH---------------HHHHHHHHHHhcCCCccchHHHHHHHHHHHHhhcchh--cc
Confidence 1222211111 110 00 011111 0111222233445558888999999998884332211 11
Q ss_pred cCCCHHHHHHHhcCCCchhhhhhHHHHHHhhhc
Q 005044 487 DGGGLELLLGLLGSTNPKQQLDGAVALFKLANK 519 (717)
Q Consensus 487 ~~~~l~~L~~ll~~~~~~v~~~a~~~l~~L~~~ 519 (717)
-.-.++.|..++.++.--.|.....++..+...
T Consensus 1096 ~~~lV~~L~~~l~s~~~i~r~~~~~clrql~~R 1128 (2067)
T KOG1822|consen 1096 LDSLVLQLCSLLSSSYLILRRASFSCLRQLVQR 1128 (2067)
T ss_pred HHHHHHHHHHHhcchhhhhhhhHHhhhhHHhHH
Confidence 233567777777776666666666666665543
No 350
>KOG0891 consensus DNA-dependent protein kinase [Replication, recombination and repair]
Probab=49.63 E-value=4.6e+02 Score=34.49 Aligned_cols=197 Identities=18% Similarity=0.123 Sum_probs=105.5
Q ss_pred cCCcHHHHHhhcCCCHHHHHHHHHHHHHhhccChhhHHHHHhcCCHHHHHHHHcCCCHHHHHHHHHHHHHhhcCChHHHH
Q 005044 206 EGGIPPLVELLEFTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSEDSAIHYEAVGVIGNLVHSSPNIKK 285 (717)
Q Consensus 206 ~~~i~~L~~ll~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~ 285 (717)
.+.+..+...+.+..-.++..+...+.+++..++...-.......+..+-.+..+.-.-+...+..-+..+....... .
T Consensus 564 ~~~lr~~~~al~~~~l~~~~~~~~~ig~l~~~~~a~vl~~lr~~~l~~~s~l~~sg~~r~~~~~a~~~~~~i~~~~~~-i 642 (2341)
T KOG0891|consen 564 PDLLRLLFIALHDENFAIQELATVIIGRLSSYNPAYVLPSLRKTLLELLTELEFSGMARTKEESAKLLCELIISSPVL-I 642 (2341)
T ss_pred chhHHHHHHHhhhhhhhhHHhHHhhccccccccHHHHhHHHHHHHHHHhchhhhcchHHhHHHHHHHhhHHHHHHHHH-H
Confidence 344445555566667778888888888888766533222222222222222222322222223333332222221111 1
Q ss_pred HHHHcCChHHHHHhhccCChHHHHHHHHHHHHHhcCChhhHHHHHhcCChHHHHHHhcC-CCHHHHHHHHHHHHHhhcCC
Q 005044 286 EVLAAGALQPVIGLLSSCCSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQS-PDVQLREMSAFALGRLAQDM 364 (717)
Q Consensus 286 ~~~~~g~l~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~l~~~~~l~~L~~~l~~-~~~~v~~~a~~~L~~l~~~~ 364 (717)
...-...+..++..+.+.+..+...+..+++.||...........+ ..++.+.+.+.+ .+..-+.++.+++.+++...
T Consensus 643 ~~~v~~~l~~~~~~~~~~~s~~~~~~~~~~~eL~~v~g~~~~~~~~-~~~~~~~~~l~~~s~~~rr~aslk~l~~l~s~~ 721 (2341)
T KOG0891|consen 643 SPYVGPILLVLLPKLQDPSSGVEKAVLETIGELCAVGGEEMVKWVD-ELFSLIIKMLQDQSSLGKRLAALKALGQLESST 721 (2341)
T ss_pred HhhcCchHHHHHHHHhccchhhHHHHHHHHHHHHHhccchhhhccc-hHHHHHHHHHHHhhhhhchhHHHHHhhhhhccc
Confidence 1112345566777777777888888888999998644322333334 566667777655 56667788999999998643
Q ss_pred CC--chhhHhcCChHHHHHhhcC-CChhHHHHHHHHHHhccCC
Q 005044 365 HN--QAGIAHNGGLVPLLKLLDS-KNGSLQHNAAFALYGLADN 404 (717)
Q Consensus 365 ~~--~~~l~~~~~l~~L~~ll~~-~~~~v~~~a~~~L~~l~~~ 404 (717)
.- ........++..+...+.. ....++..+...+.++-..
T Consensus 722 ~~~v~p~~~~P~ll~~l~~~~~te~~~~ir~~~v~~~g~~g~~ 764 (2341)
T KOG0891|consen 722 GYVVDPYLDYPELLDILINILKTEQSSTIRREAIRLLGLLGAL 764 (2341)
T ss_pred ceEecccccChHHHHHHHHHHhHhhhhHHHHHHHHHhhhhccc
Confidence 22 1122222334444444433 3455667777777766443
No 351
>cd03567 VHS_GGA VHS domain family, GGA subfamily; GGA (Golgi-localized, Gamma-ear-containing, Arf-binding) comprise a subfamily of ubiquitously expressed, monomeric, motif-binding cargo/clathrin adaptor proteins. The VHS domain has a superhelical structure similar to the structure of the ARM (Armadillo) repeats and is present at the N-termini of proteins. GGA proteins have a multidomain structure consisting of an N-terminal VHS domain linked by a short proline-rich linker to a GAT (GGA and TOM) domain, which is followed by a long flexible linker to the C-terminal appendage, GAE (gamma-adaptin ear) domain. The VHS domain of GGA proteins binds to the acidic-cluster dileucine (DxxLL) motif found on the cytoplasmic tails of cargo proteins trafficked between the trans-Golgi network and the endosomal system.
Probab=48.99 E-value=1.8e+02 Score=25.18 Aligned_cols=70 Identities=10% Similarity=0.114 Sum_probs=55.8
Q ss_pred CcHHHHHhhcCCCHHHHHHHHHHHHHhhccC-hhhHHHHHhcCCHHHHHHHHcC------CCHHHHHHHHHHHHHhh
Q 005044 208 GIPPLVELLEFTDTKVQRAAAGALRTLAFKN-DENKNQIVECNALPTLILMLRS------EDSAIHYEAVGVIGNLV 277 (717)
Q Consensus 208 ~i~~L~~ll~~~~~~v~~~a~~~L~~L~~~~-~~~~~~~~~~g~i~~L~~ll~~------~~~~v~~~a~~~L~~l~ 277 (717)
++..+.+-+.++++.++..|+..|-.++... ......+...+.+..+++++.. .+..|+..++..+..-+
T Consensus 39 a~rai~krl~~~n~~v~l~AL~LLe~~vkNCG~~fh~evas~~Fl~el~kl~~~k~~~~~~~~~Vk~kil~li~~W~ 115 (139)
T cd03567 39 AVRLLAHKIQSPQEKEALQALTVLEACMKNCGERFHSEVGKFRFLNELIKLVSPKYLGSRTSEKVKTKIIELLYSWT 115 (139)
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHHHHHcCHHHHHHHHhHHHHHHHHHHhccccCCCCCCHHHHHHHHHHHHHHH
Confidence 4567888889999999999999999988643 4456777778889899999963 46788888888887664
No 352
>KOG1848 consensus Uncharacterized conserved protein [Function unknown]
Probab=48.76 E-value=3.9e+02 Score=32.48 Aligned_cols=165 Identities=16% Similarity=0.145 Sum_probs=78.1
Q ss_pred HHHhHHHHHHHHhcCChhhHHHHHhCCChHHHHHHHhccccCCCccchhHHHHHHHHHHHHHhhcCchhhhHHHhcCCcH
Q 005044 131 EVEKGSAFALGLLAVKPEHQQLIVDNGALSHLVNLLKRHMDSNCSRAVNSVIRRAADAITNLAHENSSIKTRVRMEGGIP 210 (717)
Q Consensus 131 ~v~~~a~~~L~~l~~~~~~~~~~~~~~~i~~L~~lL~~~~~~~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~ 210 (717)
+++...+.++.++...+... .-.| -+.+.+.++.-.+... +-...+.+.+-.+|.-++.+.-..-..-.-.+.+.
T Consensus 857 evr~~sl~~l~silet~ge~---ll~~-w~sV~eml~s~~d~~~-ekek~ivrlgf~~lrlIssDfLqSLp~sci~~lid 931 (1610)
T KOG1848|consen 857 EVRISSLEALVSILETVGEH---LLHG-WQSVFEMLRSATDFGS-EKEKKIVRLGFSCLRLISSDFLQSLPTSCILDLID 931 (1610)
T ss_pred eeeHHHHHHHHHHHhccchh---hccc-cHHHHHHHHHHhhccc-hhhhhHHHhhhhhhhhhhhcchhcCChHHHHHHHH
Confidence 78888888888888333211 1123 5555555553221110 00015666677777766653221111112234555
Q ss_pred HHHHhhc-CCCHHHHHHHHHHHHHhhccChhh-----HHHHHhcCCHHHHHHHHcCCCHHHHHHHHHHH--HHhhcCChH
Q 005044 211 PLVELLE-FTDTKVQRAAAGALRTLAFKNDEN-----KNQIVECNALPTLILMLRSEDSAIHYEAVGVI--GNLVHSSPN 282 (717)
Q Consensus 211 ~L~~ll~-~~~~~v~~~a~~~L~~L~~~~~~~-----~~~~~~~g~i~~L~~ll~~~~~~v~~~a~~~L--~~l~~~~~~ 282 (717)
++..+.+ ..|..+-..|...+++++. .-.+ -+.......++.+.. ..+...+..+++|.+ .+++...++
T Consensus 932 tl~~fs~QktdlNISltAi~lfWtvsD-fl~~km~S~sed~~~~~~~e~~~s--s~~~~~~l~e~lwi~ll~~L~~~~~d 1008 (1610)
T KOG1848|consen 932 TLLVFSRQKTDLNISLTAIGLFWTVSD-FLKNKMFSTSEDSCAYNSVEDLYS--SMKSKEILPEVLWIMLLVHLADLCED 1008 (1610)
T ss_pred HHHHHHhhhccccccHHHHHHHHHHHH-HHHhhhhccchhhhhhcchhhhcc--cccchhhhhhHHHHHHHHHHHHHhcc
Confidence 6655553 3566677778887887763 1111 111122233333333 223445555555543 122111111
Q ss_pred HHHHHHHcCChHHHHHhhccCC
Q 005044 283 IKKEVLAAGALQPVIGLLSSCC 304 (717)
Q Consensus 283 ~~~~~~~~g~l~~L~~ll~~~~ 304 (717)
- +.-+..|++..+.+.+.+..
T Consensus 1009 s-r~eVRngAvqtlfri~~Shg 1029 (1610)
T KOG1848|consen 1009 S-RAEVRNGAVQTLFRIFNSHG 1029 (1610)
T ss_pred c-hHHHhhhHHHHHHHHHhhhc
Confidence 1 33345566666666666543
No 353
>PF01365 RYDR_ITPR: RIH domain; InterPro: IPR000699 Ryanodine and Inositol 1,4,5-trisphosphate (IP3) receptors are intracellular Ca2+-release channels. They become activated upon binding of their respective ligands, Ca2+ and IP3, opening an intrgral Ca2+ channel. Ryanodine receptor activation is a key component of muscular contraction, their activation allowing release of Ca2+ from the sarcoplasmic reticulum. Mutations in the ryanodine receptor lead to malignant hyperthermia susceptibility the and central core disease of muscle.; GO: 0005262 calcium channel activity, 0070588 calcium ion transmembrane transport, 0016020 membrane; PDB: 1N4K_A 2XOA_A 3UJ0_B 3UJ4_A 3T8S_A.
Probab=48.15 E-value=51 Score=30.85 Aligned_cols=80 Identities=19% Similarity=0.270 Sum_probs=35.2
Q ss_pred HHHHHHHHHHHHHhhccChhhHHHHHhcCCHHHHHHHHcCCCHHHHHHHHHHHHHhhcCChHHHHHHHHcCChHHHHHhh
Q 005044 221 TKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSEDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLL 300 (717)
Q Consensus 221 ~~v~~~a~~~L~~L~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~l~~L~~ll 300 (717)
..+...+...|..++.++..++..+.+. ++.++..+.......-..+..++..+..++......+.+. .+..+++++
T Consensus 75 ~~l~~~~~~lL~~f~~~n~~NQ~~l~~~--~~~l~~~~~~~~~~~~~~~~d~l~~i~~dN~~L~~~i~e~-~I~~~i~ll 151 (207)
T PF01365_consen 75 KELFRLCYRLLRQFCRGNRENQKYLFKH--LDFLISIFMQLQIGYGLGALDVLTEIFRDNPELCESISEE-HIEKFIELL 151 (207)
T ss_dssp HHHHHHHHHHHHHHHTT-HHHHHHHHHH--HH-----HHCCCH-TTHHHHHHHHHHHTT---------------------
T ss_pred HHHHHHHHHHHHHHHHhCHHHHHHHHHH--HhHHHHHHHHhhccCCchHHHHHHHHHHCcHHHHHHhhHH-HHHHHHHHH
Confidence 4677899999999999999998888774 4433333333222222456667777777777665665544 388888888
Q ss_pred ccC
Q 005044 301 SSC 303 (717)
Q Consensus 301 ~~~ 303 (717)
...
T Consensus 152 ~~~ 154 (207)
T PF01365_consen 152 RKH 154 (207)
T ss_dssp ---
T ss_pred HHc
Confidence 763
No 354
>KOG2011 consensus Sister chromatid cohesion complex Cohesin, subunit STAG/IRR1/SCC3 [Cell cycle control, cell division, chromosome partitioning]
Probab=47.79 E-value=5.5e+02 Score=30.51 Aligned_cols=136 Identities=15% Similarity=0.172 Sum_probs=91.5
Q ss_pred cCCCHHHHHHHHHHHHHhhcCCCCchhhHhcCChHHHHHhhcCCChhHHHHHHHHHHhccCCCcchHHHHHhcCcccccc
Q 005044 343 QSPDVQLREMSAFALGRLAQDMHNQAGIAHNGGLVPLLKLLDSKNGSLQHNAAFALYGLADNEDNVADFIRVGGVQKLQD 422 (717)
Q Consensus 343 ~~~~~~v~~~a~~~L~~l~~~~~~~~~l~~~~~l~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~l~~~~~i~~L~~ 422 (717)
++-++.+|..++..|+-++..-+ ..+.....+..+==.|++.+..||..++.+|..|....+....+..
T Consensus 297 RDV~~~IRaiCiqeLgiWi~~yP--~~Fl~dsYLKYiGWtLsDk~~~VRl~~lkaL~~L~e~~~~~~~L~l--------- 365 (1048)
T KOG2011|consen 297 RDVDPDIRAICIQELGIWIKSYP--EIFLSDSYLKYIGWTLSDKNGTVRLRCLKALIKLYEKDEDKDKLEL--------- 365 (1048)
T ss_pred ccCchHHHHHHHHHHHHHHHhcc--HHHhcchHHHHhcceeecCccHHHHHHHHHHHHHHhccccchHHHH---------
Confidence 45688999999999988886332 3455555565565667899999999999999999876443222111
Q ss_pred chhHHhhhHHHHHHHHHHHHHHhhhchHHHHHHHH-hhcchhHHHHHHHHHHhccCCCCCceeeecCCCHHHHHHHhcCC
Q 005044 423 GEFIVQATKDCVAKTLKRLEEKIHGRVLNHLLYLM-RVAEKGVQRRVALALAHLCSPDDQRTIFIDGGGLELLLGLLGST 501 (717)
Q Consensus 423 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~L~~ll-~~~~~~v~~~a~~aL~~l~~~~~~~~~~~~~~~l~~L~~ll~~~ 501 (717)
+.+..=.+++.+. .+-+..|+...+..+...... .++...-+-.+..++-+.
T Consensus 366 ----------------------FtsRFK~RIVeMadrd~~~~Vrav~L~~~~~~~~~-----g~L~d~di~~Vy~Li~d~ 418 (1048)
T KOG2011|consen 366 ----------------------FTSRFKDRIVEMADRDRNVSVRAVGLVLCLLLSSS-----GLLSDKDILIVYSLIYDS 418 (1048)
T ss_pred ----------------------HHHHHHHHHHHHHhhhcchhHHHHHHHHHHHHhcc-----cccChhHHHHHHHHHhcc
Confidence 1222445577776 444667776666555444322 134555677888999999
Q ss_pred CchhhhhhHHHHHHh
Q 005044 502 NPKQQLDGAVALFKL 516 (717)
Q Consensus 502 ~~~v~~~a~~~l~~L 516 (717)
+++++..|..-+..=
T Consensus 419 ~r~~~~aa~~fl~~k 433 (1048)
T KOG2011|consen 419 NRRVAVAAGEFLYKK 433 (1048)
T ss_pred CcchHHHHHHHHHHH
Confidence 999998888766543
No 355
>KOG1822 consensus Uncharacterized conserved protein [Function unknown]
Probab=47.47 E-value=7.1e+02 Score=31.70 Aligned_cols=178 Identities=17% Similarity=0.104 Sum_probs=88.4
Q ss_pred HHHhHHHHHHHHhc--CChhhHHHHHhCCChHHHHHHHhccccCCCccchhHHHHHHHH------HHHHHhhcCc--hhh
Q 005044 131 EVEKGSAFALGLLA--VKPEHQQLIVDNGALSHLVNLLKRHMDSNCSRAVNSVIRRAAD------AITNLAHENS--SIK 200 (717)
Q Consensus 131 ~v~~~a~~~L~~l~--~~~~~~~~~~~~~~i~~L~~lL~~~~~~~~~~~~~~~~~~a~~------~L~~l~~~~~--~~~ 200 (717)
.+...+....+.+. -++..+..+.+. ++..+.-.+..... .++..+.. ++..++...- ..-
T Consensus 799 s~Idta~~lfg~vfp~v~~k~~~~ile~--~~esi~~sk~~r~q-------sV~~~a~t~~al~s~lk~l~e~~~~~~lg 869 (2067)
T KOG1822|consen 799 SLIDTAVSLFGSVFPHVNNKIRLSILEH--FPESIKQSKSARQQ-------SVQVNAVTWQALLSALKYLAEFKGATSLG 869 (2067)
T ss_pred HHHHHHHHHHHHhccCccHHHHHHHHHH--HHHHhhhhccchhH-------HHHHHHHHHHHHHHHHHHHHhcccccccC
Confidence 67777888888877 445555444433 22222222222110 33333333 3444443221 111
Q ss_pred hHHHhcCCcHHHHHhhcCCCHHHHHHHHHHHHHhhccChhhHHHHHhcCCHHHHHHHHcCC-CHHHHHHHHHHHHHhhcC
Q 005044 201 TRVRMEGGIPPLVELLEFTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSE-DSAIHYEAVGVIGNLVHS 279 (717)
Q Consensus 201 ~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~g~i~~L~~ll~~~-~~~v~~~a~~~L~~l~~~ 279 (717)
...+..-....++..+..+++..+..+..++..++...+.. .++. +..+.+++-+.+. ++-.|.--.-+++.+-+.
T Consensus 870 ~e~v~~~~~~l~~~sl~~~~p~~rc~~~ea~arLaq~v~~~--~f~a-~~aq~~fdklas~~d~i~R~ghslalg~lhky 946 (2067)
T KOG1822|consen 870 PEEVRSSALTLIVNSLINPNPKLRCAAAEALARLAQVVGSA--PFVA-SLAQNSFDKLASARDPITRTGHSLALGCLHKY 946 (2067)
T ss_pred HHHHHHHHHHHHhhhhccCChHHHHHHHHHHHHHHHhcccc--chHH-HHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHh
Confidence 11111122334455566788999999999999998632221 1111 2345556555554 444444444444444222
Q ss_pred ChHHHHHHHHcCChHHHHHhhccCC-hHHHHHHHHHHHHHhc
Q 005044 280 SPNIKKEVLAAGALQPVIGLLSSCC-SESQREAALLLGQFAA 320 (717)
Q Consensus 280 ~~~~~~~~~~~g~l~~L~~ll~~~~-~~~~~~a~~~L~~l~~ 320 (717)
.......-.....+..+..+..++. +.++..++.++.-+..
T Consensus 947 vgs~~s~qhl~t~v~illal~~Ds~~p~VqtwSL~al~~i~~ 988 (2067)
T KOG1822|consen 947 VGSIGSGQHLNTSVSILLALATDSTSPVVQTWSLHALALILD 988 (2067)
T ss_pred ccCCCCchhcccHHHHHHHHhhcCCCchhhhhHHHHHHHHHc
Confidence 1111011111223556667776665 5899998888888764
No 356
>PF14726 RTTN_N: Rotatin, an armadillo repeat protein, centriole functioning
Probab=47.36 E-value=1.5e+02 Score=23.81 Aligned_cols=64 Identities=19% Similarity=0.161 Sum_probs=46.4
Q ss_pred hcCCHHHHHHHHcCCCHHHHHHHHHHHHHhhcCChHHHHHHHHcCChHHHHHhhccCChHHHHHH
Q 005044 247 ECNALPTLILMLRSEDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLSSCCSESQREA 311 (717)
Q Consensus 247 ~~g~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~l~~L~~ll~~~~~~~~~~a 311 (717)
..+.+..|+..+..+.......++..+..++.+ +...+.+..-|+...|.++-...++..+...
T Consensus 28 ~~~Ll~~LleWFnf~~~~~~~~VL~Ll~~L~~~-~~a~~~l~~iG~~~fL~klr~~~~~~~~~~i 91 (98)
T PF14726_consen 28 ERLLLKQLLEWFNFPPVPMKEEVLALLLRLLKS-PYAAQILRDIGAVRFLSKLRPNVEPNLQAEI 91 (98)
T ss_pred HHHHHHHHHHHhCCCCCccHHHHHHHHHHHHhC-cHHHHHHHHccHHHHHHHHHhcCCHHHHHHH
Confidence 345677788888888888889999999998766 4444777778888887776655555554443
No 357
>PF01603 B56: Protein phosphatase 2A regulatory B subunit (B56 family); InterPro: IPR002554 Protein phosphatase 2A (PP2A) is a major intracellular protein phosphatase that regulates multiple aspects of cell growth and metabolism. The ability of this widely distributed heterotrimeric enzyme to act on a diverse array of substrates is largely controlled by the nature of its regulatory B subunit. There are multiple families of B subunits, this family is called the B56 family [].; GO: 0008601 protein phosphatase type 2A regulator activity, 0007165 signal transduction, 0000159 protein phosphatase type 2A complex; PDB: 2NYM_B 2NYL_B 2IAE_E 2NPP_B 3FGA_B 2JAK_A.
Probab=47.08 E-value=3.7e+02 Score=28.34 Aligned_cols=211 Identities=11% Similarity=0.065 Sum_probs=106.5
Q ss_pred chhHHHHHHHHHHHHHhhcCchh-hhHHHhcCCcHHHHHhhcCCCHHHHHHHHHHHHHhhccChhhHHHHHhcCCHHHHH
Q 005044 177 AVNSVIRRAADAITNLAHENSSI-KTRVRMEGGIPPLVELLEFTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLI 255 (717)
Q Consensus 177 ~~~~~~~~a~~~L~~l~~~~~~~-~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~g~i~~L~ 255 (717)
+.|.=...+-..|..+....+.. ....+....+..|+.++.++|++-|.....+|.++-......+..+.. .+...+.
T Consensus 102 ~~WpHL~~vY~il~~~i~~~~~~~~~~~i~~~fi~~Ll~l~~S~D~rER~~lk~~l~~iy~k~~~~r~~Ir~-~i~~~~~ 180 (409)
T PF01603_consen 102 PSWPHLQLVYEILLRFIESPPFDPAKKYIDQKFIKKLLELFDSPDPRERDYLKTILHRIYGKFPNLRSFIRK-SINNIFY 180 (409)
T ss_dssp TTHHHHHHHHHHHHHHHTSTT--CCTTTS-HHHHHHHHHTTTSSTHHHHHHHHHHHHHHHHH-TTTHHHHHH-HHHHHHH
T ss_pred cccHhHHHHHHHHHHHHHCccccHHHHHcCHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhhhhHHHHHH-HHHHHHH
Confidence 34444444555555555422211 122344456788999999999999999999999987645555555443 3566677
Q ss_pred HHHcCC-CHHHHHHHHHHHHHhhcCCh-----HHHHHHHHcCChHHHHHhhccCCh-HHHHHHHHHHHHHhcCChhhHHH
Q 005044 256 LMLRSE-DSAIHYEAVGVIGNLVHSSP-----NIKKEVLAAGALQPVIGLLSSCCS-ESQREAALLLGQFAATDSDCKVH 328 (717)
Q Consensus 256 ~ll~~~-~~~v~~~a~~~L~~l~~~~~-----~~~~~~~~~g~l~~L~~ll~~~~~-~~~~~a~~~L~~l~~~~~~~~~~ 328 (717)
+.+... ...-...++..++.+..+-. +. ..+. ...++-+...... .....-..++..+...++.....
T Consensus 181 ~fi~e~~~~~gI~elLeil~sii~gf~~plk~eh-~~fl----~~vllPLh~~~~~~~y~~~L~~~~~~f~~kdp~l~~~ 255 (409)
T PF01603_consen 181 RFIYETERHNGIAELLEILGSIINGFAVPLKEEH-KQFL----RKVLLPLHKSPHLSSYHQQLSYCVVQFLEKDPSLAEP 255 (409)
T ss_dssp HHHHTTS--STHHHHHHHHHHHHTT--SS--HHH-HHHH----HHTTGGGGGSTGGGGTHHHHHHHHHHHHHH-GGGHHH
T ss_pred HHhcCcccccCHHHHHHHHHHHHhccCCCCcHHH-HHHH----HHHHHHHhcCCcHHHHHHHHHHHHHHHHHhCchhHHH
Confidence 777643 44556778888888865421 11 1111 2233334444332 22344445555555444443332
Q ss_pred HHhcCChHHHHHHhcCCCHHHHHHHHHHHHHhhcCCCC-chhhHhcCChHHHHHhhcCCChhHHHHHHHHH
Q 005044 329 IVQRGAVRPLIEMLQSPDVQLREMSAFALGRLAQDMHN-QAGIAHNGGLVPLLKLLDSKNGSLQHNAAFAL 398 (717)
Q Consensus 329 l~~~~~l~~L~~~l~~~~~~v~~~a~~~L~~l~~~~~~-~~~l~~~~~l~~L~~ll~~~~~~v~~~a~~~L 398 (717)
+ +..++..=-..++.-...-+.-+..+...-+. .-.-+.......+.+.+.+.+..|.+.|+..+
T Consensus 256 ~-----i~~llk~WP~t~s~Kev~FL~el~~il~~~~~~~f~~i~~~lf~~la~ci~S~h~qVAErAl~~w 321 (409)
T PF01603_consen 256 V-----IKGLLKHWPKTNSQKEVLFLNELEEILEVLPPEEFQKIMVPLFKRLAKCISSPHFQVAERALYFW 321 (409)
T ss_dssp H-----HHHHHHHS-SS-HHHHHHHHHHHHHHHTT--HHHHHHHHHHHHHHHHHHHTSSSHHHHHHHHGGG
T ss_pred H-----HHHHHHhCCCCCchhHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence 2 22333333334444444444455555442221 11111222334455666788888877766554
No 358
>KOG2549 consensus Transcription initiation factor TFIID, subunit TAF6 (also component of histone acetyltransferase SAGA) [Transcription]
Probab=46.74 E-value=3.3e+02 Score=29.37 Aligned_cols=117 Identities=15% Similarity=0.136 Sum_probs=68.0
Q ss_pred ChHHHHHHHhccccCCCccchhHHHHHHHHHHHHHhhcCchhhhHHHhcCCcHHHHHhhc----------CCCHHHHHHH
Q 005044 158 ALSHLVNLLKRHMDSNCSRAVNSVIRRAADAITNLAHENSSIKTRVRMEGGIPPLVELLE----------FTDTKVQRAA 227 (717)
Q Consensus 158 ~i~~L~~lL~~~~~~~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~----------~~~~~v~~~a 227 (717)
.+|.++.++...-...............+..++.|.. ++...-.-.-...+|.++.++- +..+.+|..|
T Consensus 240 LlPyFv~fIae~vs~ni~~~nL~lL~~lm~m~rSLl~-Np~i~lepYlh~L~PSvlTCvVsk~l~~~p~~dnhwaLRDfA 318 (576)
T KOG2549|consen 240 LLPYFVTFIAEGVSVNIVQNNLELLIYLMRMVRSLLD-NPNIFLEPYLHQLVPSVLTCVVSKNLCLRPELDNHWALRDFA 318 (576)
T ss_pred HHHHHHHHHhhheeeccccccHHHHHHHHHHHHHHhc-CCccchhhHHHHHhhHHHHhhhhhhccCCccccchHHHHHHH
Confidence 3667777776543322111223566667777777776 5554433333446677776552 2347799999
Q ss_pred HHHHHHhhccChhhHHHHHhcCCHHHHHHHHcCC--CHHHHHHHHHHHHHh
Q 005044 228 AGALRTLAFKNDENKNQIVECNALPTLILMLRSE--DSAIHYEAVGVIGNL 276 (717)
Q Consensus 228 ~~~L~~L~~~~~~~~~~~~~~g~i~~L~~ll~~~--~~~v~~~a~~~L~~l 276 (717)
+..+..++.+....... ....++..+.+.+.++ ......-++..|..+
T Consensus 319 A~ll~~i~k~f~~~y~~-L~~Rit~tl~k~l~D~~~~~st~YGai~gL~~l 368 (576)
T KOG2549|consen 319 ARLLAQICKNFSTLYNN-LQPRITRTLSKALLDNKKPLSTHYGAIAGLSEL 368 (576)
T ss_pred HHHHHHHHHhhhhHHHH-HHHHHHHHHHHHhcCCCCCchhhhhHHHHHHHh
Confidence 99999988744333333 3344666677766654 335555566666555
No 359
>PF12463 DUF3689: Protein of unknown function (DUF3689) ; InterPro: IPR022162 This family of proteins is found in eukaryotes. Proteins in this family are typically between 399 and 797 amino acids in length.
Probab=46.71 E-value=3.1e+02 Score=27.36 Aligned_cols=137 Identities=15% Similarity=0.134 Sum_probs=85.5
Q ss_pred HHHHhCCChHHHHHhhcCCCCCcccc------------CCCccchHHHhHHHHHHHHhcCChhhHHHH------------
Q 005044 98 NWIVEGGAVPALVKHLQAPPTSEADR------------NLKPFEHEVEKGSAFALGLLAVKPEHQQLI------------ 153 (717)
Q Consensus 98 ~~~~~~g~i~~L~~lL~~~~~~~~~~------------~~~~~~~~v~~~a~~~L~~l~~~~~~~~~~------------ 153 (717)
..+.+.|.||.|-.+++.-....+.. +..| +-.++.+-++.+.++++...+...+
T Consensus 3 ~~l~~~~li~~L~~~fd~l~W~~~~~~~~~~~~~~~~cdcsp-~~~lKiQfLRlvh~f~D~~~~~~~~~~~~~~~~~~~~ 81 (303)
T PF12463_consen 3 TRLAELGLIPTLNDMFDKLIWRKSSPDENVFHIHGPNCDCSP-DTILKIQFLRLVHSFCDHDSNNSAIISELLIPSVESE 81 (303)
T ss_pred HHHHHcCCHhHHHHHHHhccCCCCCCCccccccCCCCCccch-hHHHHHHHHHHHHHHhccccchhHHHHHhcCcccccc
Confidence 45778899999888775422211100 0111 1258999999999999633222211
Q ss_pred ----------HhCCChHHHHHHHhccccCCCccchhHHHHHHHHHHHHHhhcCch--hhhHHHhcCCcHHHHHhhcCC--
Q 005044 154 ----------VDNGALSHLVNLLKRHMDSNCSRAVNSVIRRAADAITNLAHENSS--IKTRVRMEGGIPPLVELLEFT-- 219 (717)
Q Consensus 154 ----------~~~~~i~~L~~lL~~~~~~~~~~~~~~~~~~a~~~L~~l~~~~~~--~~~~~~~~~~i~~L~~ll~~~-- 219 (717)
-+.|.+..++..+.....++ ..+-+-+.++-.+..+.+. -+..+...|.++.++..+-++
T Consensus 82 ~~~~~~~~~~~~~gLl~kIi~~l~~e~~~s------~~RfwLa~cVESfLRg~t~~~~Q~fl~~~GLLe~lv~eil~~~~ 155 (303)
T PF12463_consen 82 LNSNKLAECKEKKGLLSKIIHVLKKEPIDS------SYRFWLARCVESFLRGATSYADQAFLAERGLLEHLVSEILSDGC 155 (303)
T ss_pred ccccccccccccccHHHHHHHHHHhCCCch------hHHHHHHHHHHHHHcCCCcHHHHHHHHhcchHHHHHHHHhcCcc
Confidence 12366677777766544332 5667777777777776554 344566778888888866543
Q ss_pred -CHHHHHHHHHHHHHhhccChhh
Q 005044 220 -DTKVQRAAAGALRTLAFKNDEN 241 (717)
Q Consensus 220 -~~~v~~~a~~~L~~L~~~~~~~ 241 (717)
+..+.....-.|+.|...+...
T Consensus 156 ~~~~v~Q~~FDLLGELiK~n~~~ 178 (303)
T PF12463_consen 156 MSQEVLQSNFDLLGELIKFNRDA 178 (303)
T ss_pred chHHHHHHHHHHHHHHHCCCHHH
Confidence 3467788888888888765443
No 360
>KOG2676 consensus Uncharacterized conserved protein [Function unknown]
Probab=46.13 E-value=23 Score=35.20 Aligned_cols=65 Identities=8% Similarity=-0.046 Sum_probs=52.4
Q ss_pred HHHHHHHHhc-CChhhHHHHHhCCChHHHHHHHhccccCCCccchhHHHHHHHHHHHHHhhcCchhhhHHHh
Q 005044 135 GSAFALGLLA-VKPEHQQLIVDNGALSHLVNLLKRHMDSNCSRAVNSVIRRAADAITNLAHENSSIKTRVRM 205 (717)
Q Consensus 135 ~a~~~L~~l~-~~~~~~~~~~~~~~i~~L~~lL~~~~~~~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~ 205 (717)
+..+.+++|| ..++.++.+.+.|+++.++.-..-++.++ -+++..+.++.+|..++..+++.+..
T Consensus 375 Hvir~ia~lcyk~~~~qD~vrel~GvaLIlsncnidD~nP------fi~e~sI~c~r~Ll~nN~~NQ~~i~k 440 (478)
T KOG2676|consen 375 HVIRFIAFLCYKFSTAQDLVRELNGVALILSNCNIDDWNP------FIREISILCTRLLLQNNIENQKIIGK 440 (478)
T ss_pred HHHHHHHHHHHhCCchHHHHHhcCCeEEeeccCccCCCCh------HHHHHHHHHHHHHHhcchhhHHHHhc
Confidence 3677999999 89999999999999998877554433322 78999999999999988888876543
No 361
>PF13001 Ecm29: Proteasome stabiliser; InterPro: IPR024372 The proteasome (or macropain) (3.4.25.1 from EC) [, , , , ] is a eukaryotic and archaeal multicatalytic proteinase complex that seems to be involved in an ATP/ubiquitin-dependent nonlysosomal proteolytic pathway. In eukaryotes the proteasome is composed of about 28 distinct subunits which form a highly ordered ring-shaped structure (20S ring) of about 700 kDa. Most proteasome subunits can be classified, on the basis on sequence similarities into two groups, alpha (A) and beta (B). Ecm29 tethers the proteasome core particle to the regulatory particle, stabilising the interaction between these two components [, , ].
Probab=46.01 E-value=3.6e+02 Score=29.41 Aligned_cols=176 Identities=14% Similarity=0.097 Sum_probs=94.7
Q ss_pred HHHhHHHHHHHHhcCChhhHHHHHhCCChHHHHHHHh--c-cccCCCccchhHHHHHHHHHHHHHhhcCchhhhHHHhcC
Q 005044 131 EVEKGSAFALGLLAVKPEHQQLIVDNGALSHLVNLLK--R-HMDSNCSRAVNSVIRRAADAITNLAHENSSIKTRVRMEG 207 (717)
Q Consensus 131 ~v~~~a~~~L~~l~~~~~~~~~~~~~~~i~~L~~lL~--~-~~~~~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~ 207 (717)
+|...|-..|-.+..+-+ +...+..|..+.. . ......+.....++...+.. |+. +... .-....
T Consensus 252 ~V~~~ae~~LKr~~~~~e------d~~~V~~L~~Ly~G~~~~~~~~~~pa~~~lq~kIL~~---L~k-S~~A--a~~~~~ 319 (501)
T PF13001_consen 252 SVSDRAEDLLKRLSVSLE------DPDLVDRLFDLYLGKGIPPENGRPPASPRLQEKILSL---LSK-SVIA--ATSFPN 319 (501)
T ss_pred hHHHHHHHHHhhcCCCCC------CHHHHHHHHHHHHhcCCchhcCCCCCCHHHHHHHHHH---HHH-hHHH--HhCCcc
Confidence 788888888888882211 1234566666655 2 11111111112444444444 443 1100 001112
Q ss_pred CcHHHHHhhcCC--CHHHHHHHHHHH---HHhhccChhhHH----HHHhcCCHHHHHH----HHcCCCHHHHHHHHHHHH
Q 005044 208 GIPPLVELLEFT--DTKVQRAAAGAL---RTLAFKNDENKN----QIVECNALPTLIL----MLRSEDSAIHYEAVGVIG 274 (717)
Q Consensus 208 ~i~~L~~ll~~~--~~~v~~~a~~~L---~~L~~~~~~~~~----~~~~~g~i~~L~~----ll~~~~~~v~~~a~~~L~ 274 (717)
.+..+...+.++ +..++..++..+ .....+.....- .++..++.+.+-. -....+...|..+..+|+
T Consensus 320 ~~~i~~~~l~~~~~~~klk~~~l~F~~~~~~~~~~~~~~~l~~l~~~i~~~g~p~~~~~~~~~~~~~~~~lR~~aYe~lG 399 (501)
T PF13001_consen 320 ILQIVFDGLYSDNTNSKLKSLALQFIRGSSWIFKHISPQILKLLRPVILSQGWPLIQDSSSQSNSSEDIELRSLAYETLG 399 (501)
T ss_pred HHHHHhccccCCccccccchhcchhhhcchHHhhhcCHHHHHHHHHHHHhcCccccccccccCCCcccHHHHHHHHHHHH
Confidence 233333444444 567777777776 444433222222 2233444444410 011346788999999999
Q ss_pred HhhcCChHHHHHHHHcCChHHHHHhhccCChHHHHHHHHHHHHHhc
Q 005044 275 NLVHSSPNIKKEVLAAGALQPVIGLLSSCCSESQREAALLLGQFAA 320 (717)
Q Consensus 275 ~l~~~~~~~~~~~~~~g~l~~L~~ll~~~~~~~~~~a~~~L~~l~~ 320 (717)
.|+...+..- .-+-+.+..|..-|.++.++++...-.+|..++.
T Consensus 400 ~L~~~~p~l~--~~d~~li~~LF~sL~~~~~evr~sIqeALssl~~ 443 (501)
T PF13001_consen 400 LLAKRAPSLF--SKDLSLIEFLFDSLEDESPEVRVSIQEALSSLAP 443 (501)
T ss_pred HHHccCcccc--cccHHHHHHHHHHhhCcchHHHHHHHHHHHHHHH
Confidence 9998776431 1224567788888878888998888888888864
No 362
>KOG2723 consensus Uncharacterized conserved protein, contains BTB/POZ domain [General function prediction only]
Probab=45.94 E-value=41 Score=31.45 Aligned_cols=92 Identities=17% Similarity=0.186 Sum_probs=55.5
Q ss_pred CccEE-EEEcCeEeehhHHHHhh-ccHHHHHhhcCCCCC--CCCcceEcCCCCHHHHHHHHHHHhcCccccch--hhHHH
Q 005044 549 LSDVT-FLVEGRRFYAHRICLLA-SSDAFRAMFDGGYRE--KDARDIEIPNIRWEVFELMMRFIYTGSVDVTL--DIAQD 622 (717)
Q Consensus 549 ~~Dv~-~~~~~~~~~~h~~il~~-~s~~f~~~~~~~~~e--~~~~~i~l~~~~~~~~~~~l~~~Yt~~~~~~~--~~~~~ 622 (717)
+.|++ +-++|..|..-..-|.. .-....+||++...- .......| |=+-..|+.+++|+-|....++. .++..
T Consensus 7 ~~~~v~lnvGG~~ytt~l~tL~~~~ds~L~~~f~~~~~~~~d~~g~~fI-DRDG~lFRyvL~~LRt~~l~lpe~f~e~~~ 85 (221)
T KOG2723|consen 7 YPDVVELNVGGAIYTTRLGTLTKFPDSMLARMFSGELPLLRDSKGRYFI-DRDGFLFRYVLDYLRTKALLLPEDFAEVER 85 (221)
T ss_pred cCCceeeccCCeEEEeeccceeechHHHHHhhcCCCCCccccccccEEE-cCCcchHHHHHHHhcccccccchhhhhHHH
Confidence 34443 44555555433332222 222445666542211 11223333 34557899999999996665555 67899
Q ss_pred HHHHHHhhChHhHHHHHHH
Q 005044 623 LLRAADQYLLEGLKRLCEY 641 (717)
Q Consensus 623 ll~~A~~~~~~~l~~~c~~ 641 (717)
+..-|++|+++.+..++..
T Consensus 86 L~rEA~f~~l~~~~~~l~~ 104 (221)
T KOG2723|consen 86 LVREAEFFQLEAPVTYLLN 104 (221)
T ss_pred HHHHHHHHccccHHHHHhc
Confidence 9999999999988877644
No 363
>smart00288 VHS Domain present in VPS-27, Hrs and STAM. Unpublished observations. Domain of unknown function.
Probab=45.00 E-value=1e+02 Score=26.40 Aligned_cols=70 Identities=16% Similarity=0.215 Sum_probs=54.2
Q ss_pred CHHHHHHHHcCCCHHHHHHHHHHHHHhhcCC-hHHHHHHHHcCChHHHHHhhccCC--hHHHHHHHHHHHHHh
Q 005044 250 ALPTLILMLRSEDSAIHYEAVGVIGNLVHSS-PNIKKEVLAAGALQPVIGLLSSCC--SESQREAALLLGQFA 319 (717)
Q Consensus 250 ~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~-~~~~~~~~~~g~l~~L~~ll~~~~--~~~~~~a~~~L~~l~ 319 (717)
++..|.+-++++++.++..|+..|-.+..+. ......+...+++..|..++.... +.++..++..+..-+
T Consensus 38 a~r~l~krl~~~n~~v~l~AL~lLe~~vkNcg~~f~~ev~s~~fl~~L~~l~~~~~~~~~Vk~kil~li~~W~ 110 (133)
T smart00288 38 AVRLLKKRLNNKNPHVALLALTLLDACVKNCGSKFHLEVASKEFLNELVKLIKPKYPLPLVKKRILELIQEWA 110 (133)
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHhHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHHH
Confidence 4566778888999999999999999998763 445677777889999999888754 237777777776664
No 364
>PF03130 HEAT_PBS: PBS lyase HEAT-like repeat; InterPro: IPR004155 These proteins contain a short bi-helical repeat that is related to HEAT. Cyanobacteria and red algae harvest light energy using macromolecular complexes known as phycobilisomes (PBS), peripherally attached to the photosynthetic membrane. The major components of PBS are the phycobiliproteins. These heterodimeric proteins are covalently attached to phycobilins: open-chain tetrapyrrole chromophores, which function as the photosynthetic light-harvesting pigments. Phycobiliproteins differ in sequence and in the nature and number of attached phycobilins to each of their subunits. These proteins include the lyase enzymes that specifically attach particular phycobilins to apophycobiliprotein subunits. The most comprehensively studied of these is the CpcE/Flyase P31967 from SWISSPROT, P31968 from SWISSPROT, which attaches phycocyanobilin (PCB) to the alpha subunit of apophycocyanin []. Similarly, MpeU/V attaches phycoerythrobilin to phycoerythrin II, while CpeY/Z is thought to be involved in phycoerythrobilin (PEB) attachment to phycoerythrin (PE) I (PEs I and II differ in sequence and in the number of attached molecules of PEB: PE I has five, PE II has six) []. All the reactions of the above lyases involve an apoprotein cysteine SH addition to a terminal delta 3,3'-double bond. Such a reaction is not possible in the case of phycoviolobilin (PVB), the phycobilin of alpha-phycoerythrocyanin (alpha-PEC). It is thought that in this case, PCB, not PVB, is first added to apo-alpha-PEC, and is then isomerized to PVB. The addition reaction has been shown to occur in the presence of either of the components of alpha-PEC-PVB lyase PecE or PecF (or both). The isomerisation reaction occurs only when both PecE and PecF components are present, i.e. the PecE/F phycobiliprotein lyase is also a phycobilin isomerase []. Another member of this family is the NblB protein, whose similarity to the phycobiliprotein lyases was previously noted []. This constitutively expressed protein is not known to have any lyase activity. It is thought to be involved in the coordination of PBS degradation with environmental nutrient limitation. It has been suggested that the similarity of NblB to the phycobiliprotein lyases is due to the ability to bind tetrapyrrole phycobilins via the common repeated motif [].; PDB: 1TE4_A.
Probab=44.41 E-value=31 Score=19.83 Aligned_cols=26 Identities=31% Similarity=0.441 Sum_probs=18.0
Q ss_pred HHhHHHHHHHHhcCChhhHHHHHhCCChHHHHHHHh
Q 005044 132 VEKGSAFALGLLAVKPEHQQLIVDNGALSHLVNLLK 167 (717)
Q Consensus 132 v~~~a~~~L~~l~~~~~~~~~~~~~~~i~~L~~lL~ 167 (717)
||..|+++|+++.+. .+++.|++.|+
T Consensus 1 VR~~Aa~aLg~igd~----------~ai~~L~~~L~ 26 (27)
T PF03130_consen 1 VRRAAARALGQIGDP----------RAIPALIEALE 26 (27)
T ss_dssp HHHHHHHHHGGG-SH----------HHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCCH----------HHHHHHHHHhc
Confidence 578899999998852 23677777664
No 365
>PF12054 DUF3535: Domain of unknown function (DUF3535); InterPro: IPR022707 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is typically between 439 to 459 amino acids in length. This domain is found associated with PF00271 from PFAM, PF02985 from PFAM, and PF00176 from PFAM. This domain has two completely conserved residues (P and K) that may be functionally important.
Probab=44.07 E-value=3.8e+02 Score=28.55 Aligned_cols=110 Identities=15% Similarity=0.048 Sum_probs=60.7
Q ss_pred HHHHHHHHHHHHHhhccChhhHHHHHhcCCHH-HHHHHHcCCCHHHHHHHHHHHHHhhcCChHHHHHHHHcCChHHHHHh
Q 005044 221 TKVQRAAAGALRTLAFKNDENKNQIVECNALP-TLILMLRSEDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGL 299 (717)
Q Consensus 221 ~~v~~~a~~~L~~L~~~~~~~~~~~~~~g~i~-~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~l~~L~~l 299 (717)
...|..|+.+|+.++..-+...... +.. .|+..|++....-|..++-+|...+...........-..+.+.|..+
T Consensus 101 ~r~Ri~aA~ALG~l~~~~~~~~~~~----~~~~~L~~~L~S~sa~qR~~aalvl~ewa~~~~~~~~~~~~~~l~~~L~~~ 176 (441)
T PF12054_consen 101 IRARIAAAKALGLLLSYWPESSLQE----IFQPLLLPYLNSPSATQRLLAALVLEEWAKACKERNPSPPPQALSPRLLEI 176 (441)
T ss_pred HHHHHHHHHHHHHHHHhcccchHHH----HHHHHHHHHhcchhHHHHHHHHHHHHHHHHhCccccCCccHHHHHHHHHHH
Confidence 4677888899998886432221111 122 68888988887778888888877765432211100012345566677
Q ss_pred hccCChHHHHHHHHHHHHHhcCChhhHHHHHhcCC
Q 005044 300 LSSCCSESQREAALLLGQFAATDSDCKVHIVQRGA 334 (717)
Q Consensus 300 l~~~~~~~~~~a~~~L~~l~~~~~~~~~~l~~~~~ 334 (717)
|.++....-.+....+..+-.........+.+.|.
T Consensus 177 L~~~~~~~Y~El~~~l~~lr~ec~~Ll~~f~~~g~ 211 (441)
T PF12054_consen 177 LENPEPPYYDELVPSLKRLRTECQQLLATFRDVGK 211 (441)
T ss_pred HcCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 77554444444444444443333344444555555
No 366
>PF00790 VHS: VHS domain; InterPro: IPR002014 The VHS domain is a ~140 residues long domain, whose name is derived from its occurrence in VPS-27, Hrs and STAM. Based on regions surrounding the domain, VHS-proteins can be divided into 4 groups []: STAM/EAST/Hbp which all share the domain composition VHS-SH3-ITAM and carry one or two ubiquitin-interacting motifs Proteins with a FYVE domain (IPR000306 from INTERPRO) C-terminal to VHS which also carry one or two ubiquitin-interacting motifs GGA proteins with a domain composition VHS-GAT (GGA and Tom1) homology domain VHS domain alone or in combination with domains other than those listed above The VHS domain is always found at the N- terminus of proteins suggesting that such topology is important for function. The domain is considered to have a general membrane targeting/cargo recognition role in vesicular trafficking []. Resolution of the crystal structure of the VHS domain of Drosophila Hrs and human Tom1 revealed that it consists of eight helices arranged in a double-layer superhelix []. The existence of conserved patches of residues on the domain surface suggests that VHS domains may be involved in protein-protein recognition and docking. Overall, sequence similarity is low (approx 25%) amongst domain family members.; GO: 0006886 intracellular protein transport; PDB: 1X5B_A 2L0T_B 1DVP_A 3LDZ_C 3ZYQ_A 4AVX_A 3G2U_A 3G2W_A 1UJJ_A 3G2V_A ....
Probab=43.93 E-value=1.9e+02 Score=24.88 Aligned_cols=70 Identities=14% Similarity=0.184 Sum_probs=53.5
Q ss_pred CcHHHHHhhcCCCHHHHHHHHHHHHHhhccC-hhhHHHHHhcCCHHHHHHHHcCC-CHH---HHHHHHHHHHHhh
Q 005044 208 GIPPLVELLEFTDTKVQRAAAGALRTLAFKN-DENKNQIVECNALPTLILMLRSE-DSA---IHYEAVGVIGNLV 277 (717)
Q Consensus 208 ~i~~L~~ll~~~~~~v~~~a~~~L~~L~~~~-~~~~~~~~~~g~i~~L~~ll~~~-~~~---v~~~a~~~L~~l~ 277 (717)
++..|.+-|+++++.++..|+..|-.+..+. +.....+.....+..|.+++.+. ... |+..++..|..-.
T Consensus 43 a~~~l~krl~~~~~~vq~~aL~lld~lvkNcg~~f~~ev~~~~fl~~l~~l~~~~~~~~~~~Vk~k~l~ll~~W~ 117 (140)
T PF00790_consen 43 AARALRKRLKHGNPNVQLLALTLLDALVKNCGPRFHREVASKEFLDELVKLIKSKKTDPETPVKEKILELLQEWA 117 (140)
T ss_dssp HHHHHHHHHTTSSHHHHHHHHHHHHHHHHHSHHHHHHHHTSHHHHHHHHHHHHHTTTHHHSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHHHHcCCHHHHHHHhHHHHHHHHHHHHccCCCCchhHHHHHHHHHHHHHH
Confidence 4567888888999999999999999998754 45566666777888888888754 333 7888887776664
No 367
>PF04821 TIMELESS: Timeless protein; InterPro: IPR006906 The timeless gene in Drosophila melanogaster (Fruit fly) and its homologues in a number of other insects and mammals (including human) are involved in circadian rhythm control []. This family includes related proteins from a number of fungal species and from Arabidopsis thaliana.
Probab=43.34 E-value=2.4e+02 Score=27.66 Aligned_cols=76 Identities=13% Similarity=-0.011 Sum_probs=36.8
Q ss_pred ChhHHHHHHHHHHhccCCCcchHHHHHhcCccccccchhHHhhhHHHHHHHHHHHHHHhhhchHHHHHHHHhhc-chhHH
Q 005044 387 NGSLQHNAAFALYGLADNEDNVADFIRVGGVQKLQDGEFIVQATKDCVAKTLKRLEEKIHGRVLNHLLYLMRVA-EKGVQ 465 (717)
Q Consensus 387 ~~~v~~~a~~~L~~l~~~~~~~~~l~~~~~i~~L~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~L~~ll~~~-~~~v~ 465 (717)
+..+.+.++..++|+..-++....-...+ ..... --+-+......++..-|+.+..+. ..+..
T Consensus 133 d~~ii~lvL~LiRNlL~Ip~~~~~~~~~~----------~~~~~------~d~li~~l~~~~v~~lLL~l~s~~~~~~f~ 196 (266)
T PF04821_consen 133 DNLIIELVLTLIRNLLAIPDPPSASKRSD----------EDSSL------HDQLIWALFESGVLDLLLTLASSPQESDFN 196 (266)
T ss_pred HHHHHHHHHHHHHHHhcCCCCcccccccc----------hhHHH------HHHHHHHHHHcCHHHHHHHHHhCccccchh
Confidence 45577788888888866543321111000 00000 011222334566777777777765 33333
Q ss_pred HHHHHHHHhccCC
Q 005044 466 RRVALALAHLCSP 478 (717)
Q Consensus 466 ~~a~~aL~~l~~~ 478 (717)
...+.++..+..+
T Consensus 197 ~~lLEIi~ll~k~ 209 (266)
T PF04821_consen 197 LLLLEIIYLLFKG 209 (266)
T ss_pred hHHHHHHHHHHcC
Confidence 3455555555433
No 368
>PF12726 SEN1_N: SEN1 N terminal; InterPro: IPR024481 The yeast helicase Sen1 is an RNA polymerase II termination factor for noncoding RNA genes []. The C-terminal domain of Sen1 is essential for cell growth, while the N-terminal domain appears to be dispensible []. This entry represents the N-terminal domain.
Probab=43.28 E-value=2.6e+02 Score=32.25 Aligned_cols=141 Identities=20% Similarity=0.151 Sum_probs=82.9
Q ss_pred HHHHhhcCCCHHHHHHHHHHHHHhhccChhhHHHHHhcCCHHHHHHHHcCCCHHHHHHHHHHHHHhhcCChHHHHHHHH-
Q 005044 211 PLVELLEFTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSEDSAIHYEAVGVIGNLVHSSPNIKKEVLA- 289 (717)
Q Consensus 211 ~L~~ll~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~- 289 (717)
.+...+.+++..+....+.++.+++.-..-..+. ...-++.-..-.+..-..+......+|..++..++.....+..
T Consensus 445 ~l~~~~~~~~~~la~~lL~~~~~l~~l~~~~~~~--~~~~~~~~~~~~N~~~~~~~~~~~~il~rls~~~~~~L~~l~~d 522 (727)
T PF12726_consen 445 ALLKSLDSDNPDLAKALLKSLSPLIGLEKFPPKK--EKDELDPAKTQFNKSLGQITDLISQILERLSDFDPSHLKELLSD 522 (727)
T ss_pred HHHHhhcCCChHHHHHHHHHHHHhccccccCCcc--cccCcchHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHcC
Confidence 3344445566666666777777666411110000 0111111122222223456677888888888777766555554
Q ss_pred cCChHHHHHhhccCChHHHHHHHHHHHHHhcCChhhHHHHHhcCChHHHHHHhcCCCHHHHHHHHHHHHHhhcC
Q 005044 290 AGALQPVIGLLSSCCSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQSPDVQLREMSAFALGRLAQD 363 (717)
Q Consensus 290 ~g~l~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~l~~~~~l~~L~~~l~~~~~~v~~~a~~~L~~l~~~ 363 (717)
.+....++.++-+++.++...|...|..... . .|-.+.+-.+++..-........++|.++...
T Consensus 523 ~~~~~~i~s~lfsp~~~l~qaA~~llk~~~d--~--------~~R~e~i~~ll~~~~~~tL~ai~~~l~~~~~~ 586 (727)
T PF12726_consen 523 PDAAQAIWSLLFSPDDDLYQAAQDLLKQAFD--V--------DGRLEAIQALLQSNFSPTLSAINWSLRQLTKL 586 (727)
T ss_pred cchhhHHHhheeCCChHHHHHHHHHHHHHhc--C--------CcHHHHHHHHHHHhHHHHHHHHHHHHHHHHhh
Confidence 6889999999999999999999999998852 2 22334455555554444555666667666653
No 369
>PF11791 Aconitase_B_N: Aconitate B N-terminal domain; InterPro: IPR015933 Aconitase (aconitate hydratase; 4.2.1.3 from EC) is an iron-sulphur protein that contains a [4Fe-4S]-cluster and catalyses the interconversion of isocitrate and citrate via a cis-aconitate intermediate. Aconitase functions in both the TCA and glyoxylate cycles, however unlike the majority of iron-sulphur proteins that function as electron carriers, the [4Fe-4S]-cluster of aconitase reacts directly with an enzyme substrate. In eukaryotes there is a cytosolic form (cAcn) and a mitochondrial form (mAcn) of the enzyme. In bacteria there are also 2 forms, aconitase A (AcnA) and B (AcnB). Several aconitases are known to be multi-functional enzymes with a second non-catalytic, but essential function that arises when the cellular environment changes, such as when iron levels drop [, ]. Eukaryotic cAcn and mAcn, and bacterial AcnA have the same domain organisation, consisting of three N-terminal alpha/beta/alpha domains, a linker region, followed by a C-terminal 'swivel' domain with a beta/beta/alpha structure (1-2-3-linker-4), although mAcn is small than cAcn. However, bacterial AcnB has a different organisation: it contains an N-terminal HEAT-like domain, followed by the 'swivel' domain, then the three alpha/beta/alpha domains (HEAT-4-1-2-3) []. Below is a description of some of the multi-functional activities associated with different aconitases. Eukaryotic mAcn catalyses the second step of the mitochondrial TCA cycle, which is important for energy production, providing high energy electrons in the form of NADH and FADH2 to the mitochondrial oxidative phosphorylation pathway []. The TCA cycle also provides precursors for haem and amino acid production. This enzyme has a second, non-catalytic but essential role in mitochondrial DNA (mtDNA) maintenance: mAcn acts to stabilise mtDNA, forming part of mtDNA protein-DNA complexes known as nucleoids. mAcn is thought to reversibly model nucleoids to directly influence mitochondrial gene expression in response to changes in the cellular environment. Therefore, mAcn can influence the expression of components of the oxidative phosphorylation pathway encoded in mtDNA. Eukaryotic cAcn enzyme balances the amount of citrate and isocitrate in the cytoplasm, which in turn creates a balance between the amount of NADPH generated from isocitrate by isocitrate dehydrogenase with the amount of acetyl-CoA generated from citrate by citrate lyase. Fatty acid synthesis requires both NADPH and acetyl-CoA, as do other metabolic processes, including the need for NADPH to combat oxidative stress. The enzymatic form of cAcn predominates when iron levels are normal, but if they drop sufficiently to cause the disassembly of the [4Fe-4S]-cluster, then cAcn undergoes a conformational change from a compact enzyme to a more open L-shaped protein known as iron regulatory protein 1 (IRP1; or IRE-binding protein 1, IREBP1) [, ]. As IRP1, the catalytic site and the [4Fe-4S]-cluster are lost, and two new RNA-binding sites appear. IRP1 functions in the post-transcriptional regulation of genes involved in iron metabolism - it binds to mRNA iron-responsive elements (IRE), 30-nucleotide stem-loop structures at the 3' or 5' end of specific transcripts. Transcripts containing an IRE include ferritin L and H subunits (iron storage), transferrin (iron plasma chaperone), transferrin receptor (iron uptake into cells), ferroportin (iron exporter), mAcn, succinate dehydrogenase, erythroid aminolevulinic acid synthetase (tetrapyrrole biosynthesis), among others. If the IRE is in the 5'-UTR of the transcript (e.g. in ferritin mRNA), then IRP1-binding prevents its translation by blocking the transcript from binding to the ribosome. If the IRE is in the 3'-UTR of the transcript (e.g. transferrin receptor), then IRP1-binding protects it from endonuclease degradation, thereby prolonging the half-life of the transcript and enabling it to be translated []. IRP2 is another IRE-binding protein that binds to the same transcripts as IRP1. However, since IRP1 is predominantly in the enzymatic cAcn form, it is IRP2 that acts as the major metabolic regulator that maintains iron homeostasis []. Although IRP2 is homologous to IRP1, IRP2 lacks aconitase activity, and is known only to have a single function in the post-transcriptional regulation of iron metabolism genes []. In iron-replete cells, IRP2 activity is regulated primarily by iron-dependent degradation through the ubiquitin-proteasomal system. Bacterial AcnB is also known to be multi-functional. In addition to its role in the TCA cycle, AcnB was shown to be a post-transcriptional regulator of gene expression in Escherichia coli and Salmonella enterica [, ]. In S. enterica, AcnB initiates a regulatory cascade controlling flagella biosynthesis through an interaction with the ftsH transcript, an alternative RNA polymerase sigma factor. This binding lowers the intracellular concentration of FtsH protease, which in turn enhances the amount of RNA polymerase sigma32 factor (normally degraded by FtsH protease), and sigma32 then increases the synthesis of chaperone DnaK, which in turn promotes the synthesis of the flagellar protein FliC. AcnB regulates the synthesis of other proteins as well, such as superoxide dismutase (SodA) and other enzymes involved in oxidative stress. This entry represents the N-terminal HEAT-like domain, which is present in bacterial aconitase (AcnB), but not in AcnA or eukaryotic cAcn/IRP2 or mAcn. This domain is multi-helical, forming two curved layers in a right-handed alpha-alpha superhelix. HEAT-like domains are usually implicated in protein-protein interactions. The HEAT-like domain and the 'swivel' domain that follows it were shown to be sufficient for dimerisation and for AcnB binding to mRNA. An iron-mediated dimerisation mechanism may be responsible for switching AcnB between its catalytic and regulatory roles, as dimerisation requires iron while mRNA binding is inhibited by iron. More information about these proteins can be found at Protein of the Month: Aconitase [].; GO: 0003994 aconitate hydratase activity, 0006099 tricarboxylic acid cycle; PDB: 1L5J_B.
Probab=41.55 E-value=1.6e+02 Score=25.58 Aligned_cols=42 Identities=19% Similarity=0.147 Sum_probs=25.7
Q ss_pred HHHHHHHHHhccCCCCCceeeecCCCHHHHHHHhcCCCchhhhhhHHHHHHh
Q 005044 465 QRRVALALAHLCSPDDQRTIFIDGGGLELLLGLLGSTNPKQQLDGAVALFKL 516 (717)
Q Consensus 465 ~~~a~~aL~~l~~~~~~~~~~~~~~~l~~L~~ll~~~~~~v~~~a~~~l~~L 516 (717)
+..|+..|+.+..+ --+..|+.++.+++..+...|+.+|.+.
T Consensus 80 ~~~Av~LLGtM~GG----------YNV~~LI~~L~~~d~~lA~~Aa~aLk~T 121 (154)
T PF11791_consen 80 PAEAVELLGTMLGG----------YNVQPLIDLLKSDDEELAEEAAEALKNT 121 (154)
T ss_dssp HHHHHHHHTTS-SS----------TTHHHHHHGG--G-TTTHHHHHHHHHT-
T ss_pred HHHHHHHHhhccCC----------CcHHHHHHHHcCCcHHHHHHHHHHHHhh
Confidence 44566666665333 1377888888888888888888877654
No 370
>KOG4231 consensus Intracellular membrane-bound Ca2+-independent phospholipase A2 [Lipid transport and metabolism]
Probab=41.41 E-value=22 Score=37.02 Aligned_cols=68 Identities=19% Similarity=0.201 Sum_probs=48.5
Q ss_pred HHHHHhhcCCCHHHHHHHHHHHHHhhccChhhHHHHHhcCCHHHHHHHHcCCCHHHHHHHHHHHHHhh
Q 005044 210 PPLVELLEFTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSEDSAIHYEAVGVIGNLV 277 (717)
Q Consensus 210 ~~L~~ll~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~v~~~a~~~L~~l~ 277 (717)
..+-.+..+.++++++.+..++.+++.+....+..+-...+-..+++++..+.+++-..+..++..+.
T Consensus 331 ~~lk~~~a~~n~~l~~qa~~~v~~~~~~~~~r~~~~tsp~l~~~~~~~i~~~~~~~~~~~~~a~~~~~ 398 (763)
T KOG4231|consen 331 KALKSLCAHKNPELQRQALLAVGNLAFCLENRRILITSPSLRELLMRLIVTPEPRVNKAAARALAILG 398 (763)
T ss_pred HHHHHHhcccChHHHHHHHHHHHHheecccccccccCChHHHHHHHHHhcccccccchhhhHHHHHhh
Confidence 34455556789999999999999999854443333333445567778888888888777777777664
No 371
>PF06012 DUF908: Domain of Unknown Function (DUF908); InterPro: IPR010309 This is a domain of unknown function found at the N terminus of a family of E3 ubiquitin protein ligases, including yeast TOM1, many of which appear to play a role in mRNA transcription and processing. This domain is found in association with and immediately N-terminal to another domain of unknown function: IPR010314 from INTERPRO.
Probab=41.39 E-value=4e+02 Score=27.09 Aligned_cols=66 Identities=11% Similarity=0.175 Sum_probs=50.8
Q ss_pred HHHhHHHHHHHHhcCChhhHHHHHhCC--ChHHHHHHHhccccCCCccchhHHHHHHHHHHHHHhhcCchhhh
Q 005044 131 EVEKGSAFALGLLAVKPEHQQLIVDNG--ALSHLVNLLKRHMDSNCSRAVNSVIRRAADAITNLAHENSSIKT 201 (717)
Q Consensus 131 ~v~~~a~~~L~~l~~~~~~~~~~~~~~--~i~~L~~lL~~~~~~~~~~~~~~~~~~a~~~L~~l~~~~~~~~~ 201 (717)
.+|..|+.++..+...+.....+...+ .+..|++++...... ...++..|+.+|..++........
T Consensus 237 ~iRllAi~~l~~~~~~~~~~~~~l~~dp~l~~eL~eLi~~~~~v-----~~~i~~~Al~~L~ai~~~~~~~~~ 304 (329)
T PF06012_consen 237 QIRLLAIANLVYIHPESQFSSKLLEQDPELVNELVELISPEEKV-----PMDIQTAALRALEAISHKRPRCSD 304 (329)
T ss_pred HHHHHHHHHHHhhCCCHHHHHHHHhcChHHHHHHHHHhCCCCCC-----CHHHHHHHHHHHHHHHhccccHHH
Confidence 677788888877777777777888777 899999999876532 238999999999999985554443
No 372
>PF00790 VHS: VHS domain; InterPro: IPR002014 The VHS domain is a ~140 residues long domain, whose name is derived from its occurrence in VPS-27, Hrs and STAM. Based on regions surrounding the domain, VHS-proteins can be divided into 4 groups []: STAM/EAST/Hbp which all share the domain composition VHS-SH3-ITAM and carry one or two ubiquitin-interacting motifs Proteins with a FYVE domain (IPR000306 from INTERPRO) C-terminal to VHS which also carry one or two ubiquitin-interacting motifs GGA proteins with a domain composition VHS-GAT (GGA and Tom1) homology domain VHS domain alone or in combination with domains other than those listed above The VHS domain is always found at the N- terminus of proteins suggesting that such topology is important for function. The domain is considered to have a general membrane targeting/cargo recognition role in vesicular trafficking []. Resolution of the crystal structure of the VHS domain of Drosophila Hrs and human Tom1 revealed that it consists of eight helices arranged in a double-layer superhelix []. The existence of conserved patches of residues on the domain surface suggests that VHS domains may be involved in protein-protein recognition and docking. Overall, sequence similarity is low (approx 25%) amongst domain family members.; GO: 0006886 intracellular protein transport; PDB: 1X5B_A 2L0T_B 1DVP_A 3LDZ_C 3ZYQ_A 4AVX_A 3G2U_A 3G2W_A 1UJJ_A 3G2V_A ....
Probab=39.35 E-value=2e+02 Score=24.86 Aligned_cols=72 Identities=15% Similarity=0.119 Sum_probs=56.6
Q ss_pred ChHHHHHhhccCChHHHHHHHHHHHHHhcCC-hhhHHHHHhcCChHHHHHHhcC-CCHH---HHHHHHHHHHHhhcC
Q 005044 292 ALQPVIGLLSSCCSESQREAALLLGQFAATD-SDCKVHIVQRGAVRPLIEMLQS-PDVQ---LREMSAFALGRLAQD 363 (717)
Q Consensus 292 ~l~~L~~ll~~~~~~~~~~a~~~L~~l~~~~-~~~~~~l~~~~~l~~L~~~l~~-~~~~---v~~~a~~~L~~l~~~ 363 (717)
++..|.+-|.+.++.++..|+.+|..+..++ +.+...+....++..|..++.+ .... |+..++..+..++..
T Consensus 43 a~~~l~krl~~~~~~vq~~aL~lld~lvkNcg~~f~~ev~~~~fl~~l~~l~~~~~~~~~~~Vk~k~l~ll~~W~~~ 119 (140)
T PF00790_consen 43 AARALRKRLKHGNPNVQLLALTLLDALVKNCGPRFHREVASKEFLDELVKLIKSKKTDPETPVKEKILELLQEWAEA 119 (140)
T ss_dssp HHHHHHHHHTTSSHHHHHHHHHHHHHHHHHSHHHHHHHHTSHHHHHHHHHHHHHTTTHHHSHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHHHHcCCHHHHHHHhHHHHHHHHHHHHccCCCCchhHHHHHHHHHHHHHHHH
Confidence 3566788888899999999999888887665 5666777788889999998864 3333 899999988888753
No 373
>PF04869 Uso1_p115_head: Uso1 / p115 like vesicle tethering protein, head region; InterPro: IPR006953 This domain identifies a group of proteins, which are described as: General vesicular transport factor, Transcytosis associated protein (TAP) or Vesicle docking protein, this myosin-shaped molecule consists of an N-terminal globular head region, a coiled-coil tail which mediates dimerisation, and a short C-terminal acidic region []. p115 tethers COP1 vesicles to the Golgi by binding the coiled coil proteins giantin (on the vesicles) and GM130 (on the Golgi), via its C-terminal acidic region. It is required for intercisternal transport in the Golgi stack. This domain is found in the head region. The head region is highly conserved, but its function is unknown. It does not seem to be essential for vesicle tethering []. The N-terminal part of the head region contains context-detected Armadillo/beta-catenin-like repeats.; GO: 0006886 intracellular protein transport, 0048280 vesicle fusion with Golgi apparatus, 0000139 Golgi membrane, 0005737 cytoplasm; PDB: 2W3C_A 3GRL_A 3GQ2_A.
Probab=38.40 E-value=4.3e+02 Score=26.60 Aligned_cols=139 Identities=22% Similarity=0.143 Sum_probs=81.0
Q ss_pred HHHHHHHHHHHHHhhcCchhhhHHHhc-----------CCcHHHHHhhc------CCCHHHHHHHHHHHHHhhccChhhH
Q 005044 180 SVIRRAADAITNLAHENSSIKTRVRME-----------GGIPPLVELLE------FTDTKVQRAAAGALRTLAFKNDENK 242 (717)
Q Consensus 180 ~~~~~a~~~L~~l~~~~~~~~~~~~~~-----------~~i~~L~~ll~------~~~~~v~~~a~~~L~~L~~~~~~~~ 242 (717)
.++..|+.++...+.++++.+..+... .....|...|- +.++--...|+.+|..+..++++.+
T Consensus 53 ~lR~AA~~c~kay~~~N~~~q~~~l~~~i~~~~~~~~~~~~~nl~~~Ll~~~~~~~~dpy~~wfAa~il~hll~dn~~~K 132 (312)
T PF04869_consen 53 DLRCAALYCFKAYFYNNEEGQTAFLSTLIPSYASGNSDDPIANLLTALLDYDSDLSLDPYRCWFAAVILMHLLRDNPEAK 132 (312)
T ss_dssp HHHHHHHHHHHHHHTT-HHHHHHHHHTTSSTT--SS--SSSS-HHHHHT------SS-HHHHHHHHHHHHHHHTT-HHHH
T ss_pred HHHHHHHHHHHHHHhcCHHHHHHHHHHHhccCCCCcccchhhHHHHHHHHhhccccCCHHHHHHHHHHHHHHHhcCHHHH
Confidence 788889999999999888888776653 11223555443 3345455678888999988777776
Q ss_pred HHHHhc------------CCHHHHHHHHc-----CCCHHHHHHHHHHHHHhhcCChHHHHHHHHcC-ChHHHHHhhcc--
Q 005044 243 NQIVEC------------NALPTLILMLR-----SEDSAIHYEAVGVIGNLVHSSPNIKKEVLAAG-ALQPVIGLLSS-- 302 (717)
Q Consensus 243 ~~~~~~------------g~i~~L~~ll~-----~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g-~l~~L~~ll~~-- 302 (717)
+...+- ..++.+..+|. +.++.++..-+..|..-...++.....+...+ .++.|++....
T Consensus 133 e~al~V~~~~~~~ge~~vtliq~v~~lL~~~l~~~~d~ri~igyL~LL~~WL~e~p~AV~~FL~~~s~l~~Li~~~~~~~ 212 (312)
T PF04869_consen 133 EQALRVTEGDESSGEEPVTLIQTVSELLIASLRRNSDPRIQIGYLMLLIVWLFECPDAVNDFLSEGSNLQSLIEFSNQSS 212 (312)
T ss_dssp HHHTT--EE--STTS--EEHHHHHHHHTTT----T--HHHHHHHHHHHHHHHTT-HHHHHHHHCSTTHHHHHHHHHS--T
T ss_pred HHHHcccCCCCCCCCCcccHHHHHHHHHHhhhhcCCchhHHHHHHHHHHHHHhCCHHHHHHHHcCcchHHHHHHHhhcCC
Confidence 665421 12444555443 33556666666666666666666666666654 67777776432
Q ss_pred -CChHHHHHHHHHHHHH
Q 005044 303 -CCSESQREAALLLGQF 318 (717)
Q Consensus 303 -~~~~~~~~a~~~L~~l 318 (717)
.+.-++--++..|+-+
T Consensus 213 ~~~~~VqGL~A~LLGic 229 (312)
T PF04869_consen 213 SEDVLVQGLCAFLLGIC 229 (312)
T ss_dssp CCCHHHHHHHHHHHHHH
T ss_pred CCcchHHHHHHHHHHHH
Confidence 2334444455444443
No 374
>PHA03098 kelch-like protein; Provisional
Probab=38.35 E-value=72 Score=35.10 Aligned_cols=85 Identities=11% Similarity=0.058 Sum_probs=55.1
Q ss_pred cchhhHHHHHHHHHhhChHhHHHHHHHHHHhcCC------------hhcHHHHHHHHHHc---CcHHHHHHHHHHHH---
Q 005044 615 VTLDIAQDLLRAADQYLLEGLKRLCEYTIAQDIS------------LENVSSMYELSEAF---HAISLRHTCILYIM--- 676 (717)
Q Consensus 615 ~~~~~~~~ll~~A~~~~~~~l~~~c~~~l~~~i~------------~~n~~~~~~~a~~~---~~~~L~~~~~~~i~--- 676 (717)
++.+|..+++.+|+.|..+.|++.|..|+..+.. .+....++. .+.. +-..+.+.+++|+.
T Consensus 105 l~~~nc~~~~~~a~~~~~~~L~~~~~~~i~~nf~~v~~~~~f~~l~~~~l~~ll~-~~~L~v~~E~~v~~av~~W~~~~~ 183 (534)
T PHA03098 105 IDDNNCIDIYRFSFFYGCKKLYSAAYNYIRNNIELIYNDPDFIYLSKNELIKILS-DDKLNVSSEDVVLEIIIKWLTSKK 183 (534)
T ss_pred CCHhHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHhcCchhhcCCHHHHHHHhc-CCCcCcCCHHHHHHHHHHHHhcCh
Confidence 6789999999999999999999999999886641 111111111 1111 23467888888884
Q ss_pred ----HhHHHhcCCchhhhchhhcHHHHH
Q 005044 677 ----EHFDKLSTRPGHSNLIQRIIPEIH 700 (717)
Q Consensus 677 ----~~~~~~~~~~~f~~l~~~~~~~l~ 700 (717)
+++.++++.=-|.-++.+.+.++.
T Consensus 184 ~~r~~~~~~ll~~vR~~~~~~~~l~~~~ 211 (534)
T PHA03098 184 NNKYKDICLILKVLRITFLSEEGIKKLK 211 (534)
T ss_pred hhhHhHHHHHHhhccccccCHHHHHHHH
Confidence 345566665556556555554443
No 375
>KOG1410 consensus Nuclear transport receptor RanBP16 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=37.57 E-value=6.2e+02 Score=28.21 Aligned_cols=215 Identities=15% Similarity=0.143 Sum_probs=105.9
Q ss_pred hHHHhHHHHHHHHhcCChhhHHHHHhCCChHHHHHHHhccccCCCccchhHHHHHHHHHHHHHhhcCchhhhHHHhcCCc
Q 005044 130 HEVEKGSAFALGLLAVKPEHQQLIVDNGALSHLVNLLKRHMDSNCSRAVNSVIRRAADAITNLAHENSSIKTRVRMEGGI 209 (717)
Q Consensus 130 ~~v~~~a~~~L~~l~~~~~~~~~~~~~~~i~~L~~lL~~~~~~~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i 209 (717)
+.-|.+|-.+|..++.+|++ +..-.-++.+.+.+ --+..|..+|..+.....+.. .....++-
T Consensus 20 ~~~R~~AE~~L~e~s~spec---------lskCqlll~~gs~p-------Ys~mlAst~L~Klvs~~t~lp-l~qrldir 82 (1082)
T KOG1410|consen 20 PTARHRAEKALAELSESPEC---------LSKCQLLLERGSYP-------YSQMLASTCLMKLVSRKTPLP-LEQRLDIR 82 (1082)
T ss_pred HHHHHHHHHHHHHHccCHHH---------HHHHHHHHHcCCCc-------hHHHHHHHHHHHHHcCCCCCc-HHHHHHHH
Confidence 38899999999999999987 33334444444332 334455666666665433221 01111223
Q ss_pred HHHHHhhcCCCH----HHHHHHHHHHHHhhcc--ChhhHHHHHhcCCHHHHHHHHcCCCHHHHHHHHHHHHHhhcC----
Q 005044 210 PPLVELLEFTDT----KVQRAAAGALRTLAFK--NDENKNQIVECNALPTLILMLRSEDSAIHYEAVGVIGNLVHS---- 279 (717)
Q Consensus 210 ~~L~~ll~~~~~----~v~~~a~~~L~~L~~~--~~~~~~~~~~~g~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~---- 279 (717)
..++..+....| -+...-+..++.++.. .+..+....-.+.+..+.+.++.++.+-..-++.+|..+...
T Consensus 83 ~Yilnylat~~Pk~~~fvi~sLiQl~arlTK~gW~d~~k~~y~FRd~v~~~~kfl~~~~ve~~~igv~iLsqLvqemN~~ 162 (1082)
T KOG1410|consen 83 NYILNYLATGAPKLAPFVIQSLIQLFARLTKLGWFDQQKDEYVFRDPVDDVTKFLQMDNVEHCIIGVQILSQLVQEMNQA 162 (1082)
T ss_pred HHHHHHHhcCCCCcccHHHHHHHHHHHHHHhccccccccccchhhhhHHHHHHHhccCchHHHHHHHHHHHHHHHHhhCC
Confidence 345555544332 3344444455555431 112222222234566666777666665555666666665421
Q ss_pred ---Ch--HHHH---HHHHcCChHH---HHHhhccCC-----hH----HHHHHHHHHHHHh-------c------------
Q 005044 280 ---SP--NIKK---EVLAAGALQP---VIGLLSSCC-----SE----SQREAALLLGQFA-------A------------ 320 (717)
Q Consensus 280 ---~~--~~~~---~~~~~g~l~~---L~~ll~~~~-----~~----~~~~a~~~L~~l~-------~------------ 320 (717)
.+ ..++ .+.+..+.+. -..+|++.. .+ +...+...-.|.. +
T Consensus 163 ~~~~p~tkHRkias~FRD~sL~~vf~laln~L~~~~~~nlnd~~q~~L~~~vL~L~l~Cl~FDfiGss~DEssed~ctVQ 242 (1082)
T KOG1410|consen 163 DGMDPSTKHRKIASSFRDDSLFDVFSLALNLLKDNVDLNLNDRAQLGLLMQVLKLNLNCLNFDFIGSSTDESSEDLCTVQ 242 (1082)
T ss_pred CCCCcchHHHHHHhhhhhhHHHHHHHHHHHHHHHhcccCcccHhHhhHHHHHHHHHhhhcccccccccccccccccccee
Confidence 01 0111 1111111111 122222211 11 1222222111110 0
Q ss_pred CChhhHHHHHhcCChHHHHHHhcCCCHHHHHHHHHHHHHhh
Q 005044 321 TDSDCKVHIVQRGAVRPLIEMLQSPDVQLREMSAFALGRLA 361 (717)
Q Consensus 321 ~~~~~~~~l~~~~~l~~L~~~l~~~~~~v~~~a~~~L~~l~ 361 (717)
-....+..+.+...++.+.++..+-.+..-+.++.+|..++
T Consensus 243 IPTsWRs~f~d~stlqlfFdly~slp~~~S~~alsclvqlA 283 (1082)
T KOG1410|consen 243 IPTSWRSSFLDSSTLQLFFDLYHSLPPELSELALSCLVQLA 283 (1082)
T ss_pred cCcHHHHHhcCchHHHHHHHHhccCCchhhHHHHHHHHHHH
Confidence 01234555677788889999998877777788888888887
No 376
>KOG2149 consensus Uncharacterized conserved protein [Function unknown]
Probab=37.18 E-value=3.5e+02 Score=27.89 Aligned_cols=113 Identities=13% Similarity=0.160 Sum_probs=73.5
Q ss_pred cHHHHHhhcCCCHHHHHHHHHHHHHhhccChhhHHHHHhcCCHHHHHHHHcCCCHHHHHHHHHHHHHhhcCChHHHHHHH
Q 005044 209 IPPLVELLEFTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSEDSAIHYEAVGVIGNLVHSSPNIKKEVL 288 (717)
Q Consensus 209 i~~L~~ll~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~ 288 (717)
+..|+..+++.+..+|..|+.-|..+....+.... .....+++.+..+..+.+..+|.....++-.+....-.......
T Consensus 60 lkeLl~qlkHhNakvRkdal~glkd~l~s~p~~l~-~~~~~ll~~~~~~i~D~~~~vR~~~~qll~~~i~~~~~e~~sp~ 138 (393)
T KOG2149|consen 60 LKELLSQLKHHNAKVRKDALNGLKDLLKSHPAELQ-SHLYALLQKLRELILDDDSLVRDALYQLLDSLILPACKEDQSPM 138 (393)
T ss_pred HHHHHhhhcCchHhhhHHHHHHHHHHHHhChHHHH-HHHHHHHHHhhhhhcCccccHHHHHHHHHHHHHhhcchhhhcch
Confidence 45677788899999999999999988764333322 12234677777788888899999988888776433211111111
Q ss_pred HcCChHHHHHhhccCChHHHHHHHHHHHHHhcCC
Q 005044 289 AAGALQPVIGLLSSCCSESQREAALLLGQFAATD 322 (717)
Q Consensus 289 ~~g~l~~L~~ll~~~~~~~~~~a~~~L~~l~~~~ 322 (717)
..=+.+.+...+.+-.++++..++..+.-+....
T Consensus 139 ~~l~~~yi~~AMThit~~i~~dslkfL~~Ll~~~ 172 (393)
T KOG2149|consen 139 VSLLMPYISSAMTHITPEIQEDSLKFLSLLLERY 172 (393)
T ss_pred HHHHHHHHHHHHhhccHHHHHhhHHHHHHHHHHc
Confidence 1112344445556667888888888887776544
No 377
>smart00567 EZ_HEAT E-Z type HEAT repeats. Present in subunits of cyanobacterial phycocyanin lyase, and other proteins. Probable scaffolding role.
Probab=35.28 E-value=60 Score=18.95 Aligned_cols=28 Identities=39% Similarity=0.531 Sum_probs=19.5
Q ss_pred HHHhHHHHHHHHhcCChhhHHHHHhCCChHHHHHHHhc
Q 005044 131 EVEKGSAFALGLLAVKPEHQQLIVDNGALSHLVNLLKR 168 (717)
Q Consensus 131 ~v~~~a~~~L~~l~~~~~~~~~~~~~~~i~~L~~lL~~ 168 (717)
.+|..|+.+|+++.+. + +++.|+..+++
T Consensus 2 ~vR~~aa~aLg~~~~~-~---------a~~~L~~~l~d 29 (30)
T smart00567 2 LVRHEAAFALGQLGDE-E---------AVPALIKALED 29 (30)
T ss_pred HHHHHHHHHHHHcCCH-h---------HHHHHHHHhcC
Confidence 6899999999998532 2 25666666643
No 378
>PF12765 Cohesin_HEAT: HEAT repeat associated with sister chromatid cohesion
Probab=35.07 E-value=42 Score=21.87 Aligned_cols=26 Identities=19% Similarity=0.220 Sum_probs=20.5
Q ss_pred cCChHHHHHHhcCCCHHHHHHHHHHH
Q 005044 332 RGAVRPLIEMLQSPDVQLREMSAFAL 357 (717)
Q Consensus 332 ~~~l~~L~~~l~~~~~~v~~~a~~~L 357 (717)
..+...+...+.++++.+|++|+.+|
T Consensus 17 ~~v~~~i~~rl~D~s~~VR~aav~ll 42 (42)
T PF12765_consen 17 SDVQSAIIRRLSDSSPSVREAAVDLL 42 (42)
T ss_pred HHHHHHHHHHhcCCChHHHHHHHHHC
Confidence 34567788888999999999987653
No 379
>PF04388 Hamartin: Hamartin protein; InterPro: IPR007483 This family includes the hamartin protein which is thought to function as a tumour suppressor. The hamartin protein interacts with the tuberin protein IPR003913 from INTERPRO. Tuberous sclerosis complex (TSC) is an autosomal dominant disorder and is characterised by the presence of hamartomas in many organs, such as brain, skin, heart, lung, and kidney. It is caused by mutation in either TSC1 or TSC2 tumour suppressor genes. TSC1 encodes a protein, hamartin, containing two coiled-coil regions, which have been shown to mediate binding to tuberin. The TSC2 gene codes for tuberin IPR003913 from INTERPRO. These two proteins function within the same pathway(s) regulating cell cycle, cell growth, adhesion, and vesicular trafficking [].
Probab=34.62 E-value=5.2e+02 Score=29.37 Aligned_cols=58 Identities=21% Similarity=0.259 Sum_probs=48.5
Q ss_pred hHHHHHHHHHHHHHhcCChhhHHHHHhcCChHHHHHHhcC-CCHHHHHHHHHHHHHhhc
Q 005044 305 SESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQS-PDVQLREMSAFALGRLAQ 362 (717)
Q Consensus 305 ~~~~~~a~~~L~~l~~~~~~~~~~l~~~~~l~~L~~~l~~-~~~~v~~~a~~~L~~l~~ 362 (717)
+..|..++..|+.+....+.....+.+..+++.|+..|.. .+..+...|+.+|..|.-
T Consensus 82 ~~~Rl~~L~Ll~~~v~~qp~~l~~i~~t~Lf~~LLk~L~~D~~~~~~~~al~~LimlLP 140 (668)
T PF04388_consen 82 PSYRLQALTLLGHFVRSQPPWLYKILQTPLFKSLLKCLQFDTSITVVSSALLVLIMLLP 140 (668)
T ss_pred chhHHHHHHHHHHHHhcCCchHHHHhcChhHHHHHHHHhhcccHHHHHHHHHHHHHHhc
Confidence 5678889999999988888888889999999999999975 567777788888887764
No 380
>KOG4231 consensus Intracellular membrane-bound Ca2+-independent phospholipase A2 [Lipid transport and metabolism]
Probab=34.33 E-value=31 Score=36.01 Aligned_cols=70 Identities=23% Similarity=0.312 Sum_probs=49.3
Q ss_pred hHHHHHhhccCChHHHHHHHHHHHHHhcCChhhHHHHHhcCChHHHHHHhcCCCHHHHHHHHHHHHHhhc
Q 005044 293 LQPVIGLLSSCCSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQSPDVQLREMSAFALGRLAQ 362 (717)
Q Consensus 293 l~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~l~~~~~l~~L~~~l~~~~~~v~~~a~~~L~~l~~ 362 (717)
...+-.+....++++++++..++++++......+..+....+-..++.++..+.+.+-+.+..++.-+..
T Consensus 330 ~~~lk~~~a~~n~~l~~qa~~~v~~~~~~~~~r~~~~tsp~l~~~~~~~i~~~~~~~~~~~~~a~~~~~~ 399 (763)
T KOG4231|consen 330 LKALKSLCAHKNPELQRQALLAVGNLAFCLENRRILITSPSLRELLMRLIVTPEPRVNKAAARALAILGE 399 (763)
T ss_pred HHHHHHHhcccChHHHHHHHHHHHHheecccccccccCChHHHHHHHHHhcccccccchhhhHHHHHhhh
Confidence 3444445556789999999999999986655544444455566677788877777777777777776653
No 381
>KOG2005 consensus 26S proteasome regulatory complex, subunit RPN1/PSMD2 [Posttranslational modification, protein turnover, chaperones]
Probab=33.09 E-value=7.3e+02 Score=27.69 Aligned_cols=64 Identities=19% Similarity=0.189 Sum_probs=47.9
Q ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHhhcCChHHHHHHHHcCChHHHHHhhccCChHHHHHHHHHHHHHhcC
Q 005044 251 LPTLILMLRSEDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLSSCCSESQREAALLLGQFAAT 321 (717)
Q Consensus 251 i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~l~~L~~ll~~~~~~~~~~a~~~L~~l~~~ 321 (717)
+..+-+++.-+++.+|+..=-+++-++.+++.. .+++.|.++..+.+.++...+..+++-+.++
T Consensus 642 lR~f~h~l~yge~~iRravPLal~llsvSNPq~-------~vlDtLsk~shd~D~eva~naIfamGLiGAG 705 (878)
T KOG2005|consen 642 LRHFGHLLHYGEPHIRRAVPLALGLLSVSNPQV-------NVLDTLSKFSHDGDLEVAMNAIFAMGLIGAG 705 (878)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHhhhccCCCcc-------hHHHHHHHhccCcchHHHHHHHHHhccccCC
Confidence 445566777788888888888888887777753 3577788888888888888888888877544
No 382
>cd08050 TAF6 TATA Binding Protein (TBP) Associated Factor 6 (TAF6) is one of several TAFs that bind TBP and is involved in forming Transcription Factor IID (TFIID) complex. The TATA Binding Protein (TBP) Associated Factor 6 (TAF6) is one of several TAFs that bind TBP and are involved in forming Transcription Factor IID (TFIID) complex. TFIID is one of seven General Transcription Factors (GTFs) (TFIIA, TFIIB, TFIID, TFIIE, TFIIF, and TFIID) that are involved in accurate initiation of transcription by RNA polymerase II in eukaryotes. TFIID plays an important role in the recognition of promoter DNA and assembly of the pre-initiation complex. TFIID complex is composed of the TBP and at least 13 TAFs. TAFs are named after their electrophoretic mobility in polyacrylamide gels in different species. A new, unified nomenclature has been suggested for the pol II TAFs to show the relationship between TAF orthologs and paralogs. Several hypotheses are proposed for TAFs functions such as serving as
Probab=32.75 E-value=84 Score=32.15 Aligned_cols=86 Identities=12% Similarity=0.001 Sum_probs=49.3
Q ss_pred HHHHHHhhhhhccccchHH-HHHHHHHHHHHHHHhhcChhhHHHHHhCCChHHHHHhhcCCCCCccccCCCccchHHHhH
Q 005044 57 SEVSAQVNVLNTTFSWLEA-DRAAAKRATHVLAELAKNEEVVNWIVEGGAVPALVKHLQAPPTSEADRNLKPFEHEVEKG 135 (717)
Q Consensus 57 ~~i~~l~~~L~~~~~~~~~-~~~~~~~a~~~L~~l~~~~~~~~~~~~~g~i~~L~~lL~~~~~~~~~~~~~~~~~~v~~~ 135 (717)
..+|.++.++......... +.......++.+..+..++.......-.-.+|.++..+-...... ..+....+.+|..
T Consensus 210 ~LlPyf~~fI~~~v~~n~~~nl~~L~~lm~~v~ALl~N~~l~le~Ylh~Lip~vltclv~~~l~~--~~~~~~h~~LRd~ 287 (343)
T cd08050 210 QLLPYFVRFIAEGVTVNLDQNLALLIYLMRMVRALLDNPNLHLEPYLHQLIPSVLTCLVAKQLCS--RPPDDNHWALRDY 287 (343)
T ss_pred hhhhHHHHHHHHHHHhhhcccHHHHHHHHHHHHHHhcCCCCchHHhHHHHHHHHHHHhhhHhhcC--CCCCchHHHHHHH
Confidence 3455556665554433322 444566667777777776543332222336788887664332210 0112344599999
Q ss_pred HHHHHHHhc
Q 005044 136 SAFALGLLA 144 (717)
Q Consensus 136 a~~~L~~l~ 144 (717)
|+.+|+.++
T Consensus 288 AA~ll~~i~ 296 (343)
T cd08050 288 AARLLAQIC 296 (343)
T ss_pred HHHHHHHHH
Confidence 999999999
No 383
>PF04388 Hamartin: Hamartin protein; InterPro: IPR007483 This family includes the hamartin protein which is thought to function as a tumour suppressor. The hamartin protein interacts with the tuberin protein IPR003913 from INTERPRO. Tuberous sclerosis complex (TSC) is an autosomal dominant disorder and is characterised by the presence of hamartomas in many organs, such as brain, skin, heart, lung, and kidney. It is caused by mutation in either TSC1 or TSC2 tumour suppressor genes. TSC1 encodes a protein, hamartin, containing two coiled-coil regions, which have been shown to mediate binding to tuberin. The TSC2 gene codes for tuberin IPR003913 from INTERPRO. These two proteins function within the same pathway(s) regulating cell cycle, cell growth, adhesion, and vesicular trafficking [].
Probab=32.46 E-value=5.2e+02 Score=29.38 Aligned_cols=60 Identities=17% Similarity=0.082 Sum_probs=48.9
Q ss_pred HHHHHHHHHHHHHhhcCchhhhHHHhcCCcHHHHHhhcC-CCHHHHHHHHHHHHHhhccCh
Q 005044 180 SVIRRAADAITNLAHENSSIKTRVRMEGGIPPLVELLEF-TDTKVQRAAAGALRTLAFKND 239 (717)
Q Consensus 180 ~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~-~~~~v~~~a~~~L~~L~~~~~ 239 (717)
..+..++..|+.+....+..-..+.+...++.|+.+|.. .+..+...|+.+|.-|.-.-+
T Consensus 83 ~~Rl~~L~Ll~~~v~~qp~~l~~i~~t~Lf~~LLk~L~~D~~~~~~~~al~~LimlLP~ip 143 (668)
T PF04388_consen 83 SYRLQALTLLGHFVRSQPPWLYKILQTPLFKSLLKCLQFDTSITVVSSALLVLIMLLPHIP 143 (668)
T ss_pred hhHHHHHHHHHHHHhcCCchHHHHhcChhHHHHHHHHhhcccHHHHHHHHHHHHHHhcccc
Confidence 677889999999999888888888888999999998864 567788888888888875433
No 384
>PF04869 Uso1_p115_head: Uso1 / p115 like vesicle tethering protein, head region; InterPro: IPR006953 This domain identifies a group of proteins, which are described as: General vesicular transport factor, Transcytosis associated protein (TAP) or Vesicle docking protein, this myosin-shaped molecule consists of an N-terminal globular head region, a coiled-coil tail which mediates dimerisation, and a short C-terminal acidic region []. p115 tethers COP1 vesicles to the Golgi by binding the coiled coil proteins giantin (on the vesicles) and GM130 (on the Golgi), via its C-terminal acidic region. It is required for intercisternal transport in the Golgi stack. This domain is found in the head region. The head region is highly conserved, but its function is unknown. It does not seem to be essential for vesicle tethering []. The N-terminal part of the head region contains context-detected Armadillo/beta-catenin-like repeats.; GO: 0006886 intracellular protein transport, 0048280 vesicle fusion with Golgi apparatus, 0000139 Golgi membrane, 0005737 cytoplasm; PDB: 2W3C_A 3GRL_A 3GQ2_A.
Probab=32.19 E-value=5.4e+02 Score=25.91 Aligned_cols=143 Identities=22% Similarity=0.285 Sum_probs=85.7
Q ss_pred CHHHHHHHHHHHHHhhccChhhHHHHHhc-----------CCHHHHHHHHc------CCCHHHHHHHHHHHHHhhcCChH
Q 005044 220 DTKVQRAAAGALRTLAFKNDENKNQIVEC-----------NALPTLILMLR------SEDSAIHYEAVGVIGNLVHSSPN 282 (717)
Q Consensus 220 ~~~v~~~a~~~L~~L~~~~~~~~~~~~~~-----------g~i~~L~~ll~------~~~~~v~~~a~~~L~~l~~~~~~ 282 (717)
.-.+|.+|+.++.....++++.+..+++. .....|+..|- +.|+--...|+.+|..+..+++.
T Consensus 51 ~f~lR~AA~~c~kay~~~N~~~q~~~l~~~i~~~~~~~~~~~~~nl~~~Ll~~~~~~~~dpy~~wfAa~il~hll~dn~~ 130 (312)
T PF04869_consen 51 PFDLRCAALYCFKAYFYNNEEGQTAFLSTLIPSYASGNSDDPIANLLTALLDYDSDLSLDPYRCWFAAVILMHLLRDNPE 130 (312)
T ss_dssp -HHHHHHHHHHHHHHHTT-HHHHHHHHHTTSSTT--SS--SSSS-HHHHHT------SS-HHHHHHHHHHHHHHHTT-HH
T ss_pred chHHHHHHHHHHHHHHhcCHHHHHHHHHHHhccCCCCcccchhhHHHHHHHHhhccccCCHHHHHHHHHHHHHHHhcCHH
Confidence 56899999999999998888888877642 11223555444 33555566788899999888888
Q ss_pred HHHHHHHc--C----------ChHHHHHhhcc-----CChHHHHHHHHHHHHHhcCChhhHHHHHhc-CChHHHHHHhcC
Q 005044 283 IKKEVLAA--G----------ALQPVIGLLSS-----CCSESQREAALLLGQFAATDSDCKVHIVQR-GAVRPLIEMLQS 344 (717)
Q Consensus 283 ~~~~~~~~--g----------~l~~L~~ll~~-----~~~~~~~~a~~~L~~l~~~~~~~~~~l~~~-~~l~~L~~~l~~ 344 (717)
.+.....- | .+..+..+|.. .++.++..-+..|..-..+++.....++.. +.++.|++....
T Consensus 131 ~Ke~al~V~~~~~~~ge~~vtliq~v~~lL~~~l~~~~d~ri~igyL~LL~~WL~e~p~AV~~FL~~~s~l~~Li~~~~~ 210 (312)
T PF04869_consen 131 AKEQALRVTEGDESSGEEPVTLIQTVSELLIASLRRNSDPRIQIGYLMLLIVWLFECPDAVNDFLSEGSNLQSLIEFSNQ 210 (312)
T ss_dssp HHHHHTT--EE--STTS--EEHHHHHHHHTTT----T--HHHHHHHHHHHHHHHTT-HHHHHHHHCSTTHHHHHHHHHS-
T ss_pred HHHHHHcccCCCCCCCCCcccHHHHHHHHHHhhhhcCCchhHHHHHHHHHHHHHhCCHHHHHHHHcCcchHHHHHHHhhc
Confidence 76655432 1 34555655543 234444444445554445667666666654 588889887533
Q ss_pred ---CCHHHHHHHHHHHHHhhc
Q 005044 345 ---PDVQLREMSAFALGRLAQ 362 (717)
Q Consensus 345 ---~~~~v~~~a~~~L~~l~~ 362 (717)
.+.-++--++-.|+-+-.
T Consensus 211 ~~~~~~~VqGL~A~LLGicye 231 (312)
T PF04869_consen 211 SSSEDVLVQGLCAFLLGICYE 231 (312)
T ss_dssp -TCCCHHHHHHHHHHHHHHHH
T ss_pred CCCCcchHHHHHHHHHHHHHH
Confidence 456666666666655544
No 385
>PF14663 RasGEF_N_2: Rapamycin-insensitive companion of mTOR RasGEF_N domain
Probab=32.13 E-value=1.6e+02 Score=24.37 Aligned_cols=39 Identities=8% Similarity=0.163 Sum_probs=31.3
Q ss_pred CHHHHHHHHcCCCHHHHHHHHHHHHHhhcCChHHHHHHHH
Q 005044 250 ALPTLILMLRSEDSAIHYEAVGVIGNLVHSSPNIKKEVLA 289 (717)
Q Consensus 250 ~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~ 289 (717)
+++.|+.-|.+++++|...|+.+|...+... .....++.
T Consensus 9 ~i~lLv~QL~D~~~~V~~~A~~iL~e~c~~~-~~le~~v~ 47 (115)
T PF14663_consen 9 GIELLVTQLYDPSPEVVAAALEILEEACEDK-EYLEYLVS 47 (115)
T ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHHHhch-hhHHHHHH
Confidence 5788999999999999999999999998765 44344443
No 386
>PF14666 RICTOR_M: Rapamycin-insensitive companion of mTOR, middle domain
Probab=31.19 E-value=4.7e+02 Score=24.87 Aligned_cols=141 Identities=14% Similarity=0.205 Sum_probs=91.4
Q ss_pred HHHHHHHHHHHHHhhcChhhHHHHHhCCChHHHHHhhcCCCCCccc-cCCCccch-----HHHhHHHHHHHHhcCChhhH
Q 005044 77 RAAAKRATHVLAELAKNEEVVNWIVEGGAVPALVKHLQAPPTSEAD-RNLKPFEH-----EVEKGSAFALGLLAVKPEHQ 150 (717)
Q Consensus 77 ~~~~~~a~~~L~~l~~~~~~~~~~~~~g~i~~L~~lL~~~~~~~~~-~~~~~~~~-----~v~~~a~~~L~~l~~~~~~~ 150 (717)
+.....++..+..+..+++-...+...+.++.+.+.|...++...- .+.+.++| .+-..=...||.++.++...
T Consensus 78 ~~y~~vGc~L~~~Ll~~~eG~~~l~~~~ll~qia~~L~~~d~~~g~~~~~~lfs~~~l~~tl~~~Yf~~IG~lS~~~~Gl 157 (226)
T PF14666_consen 78 QKYVRVGCQLLETLLSSPEGIKYLSESKLLPQIAECLAQVDPMSGITAHDPLFSPQRLSTTLSRGYFLFIGVLSSTPNGL 157 (226)
T ss_pred hHHHHHHHHHHHHHHcCcHHHHHHHHccHHHHHHHHHHHHhhhcCCcccccccCHHHHHhhHHHHHHHHHHHHhCChhHH
Confidence 3345666777888888777777777889999998888765321100 11123333 23334456788888888888
Q ss_pred HHHHhCCChHHHHHHHhccccCCCccchhHHHHHHHHHHHHHhhcCchhhhHHHhcCCcHHHHHhhcCCCHHHHHHHHHH
Q 005044 151 QLIVDNGALSHLVNLLKRHMDSNCSRAVNSVIRRAADAITNLAHENSSIKTRVRMEGGIPPLVELLEFTDTKVQRAAAGA 230 (717)
Q Consensus 151 ~~~~~~~~i~~L~~lL~~~~~~~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~ 230 (717)
..+-+.+....+..+....+.+ ++... ++.++=...+.... ..|-..|..++..+|..|...
T Consensus 158 ~lLe~~~if~~l~~i~~~~~~~-------~l~kl---il~~LDY~~~~~~R--------~iLsKaLt~~s~~iRl~aT~~ 219 (226)
T PF14666_consen 158 KLLERWNIFTMLYHIFSLSSRD-------DLLKL---ILSSLDYSVDGHPR--------IILSKALTSGSESIRLYATKH 219 (226)
T ss_pred HHHHHCCHHHHHHHHHccCchH-------HHHHH---HHhhCCCCCccHHH--------HHHHHHHhcCCHHHHHHHHHH
Confidence 8889999999999988875331 33333 44444222221111 134567788899999999999
Q ss_pred HHHhh
Q 005044 231 LRTLA 235 (717)
Q Consensus 231 L~~L~ 235 (717)
|+.+.
T Consensus 220 L~~ll 224 (226)
T PF14666_consen 220 LRVLL 224 (226)
T ss_pred HHHHh
Confidence 98875
No 387
>KOG4682 consensus Uncharacterized conserved protein, contains BTB/POZ domain [General function prediction only]
Probab=30.86 E-value=47 Score=33.73 Aligned_cols=33 Identities=24% Similarity=0.318 Sum_probs=30.5
Q ss_pred cchhhHHHHHHHHHhhChHhHHHHHHHHHHhcC
Q 005044 615 VTLDIAQDLLRAADQYLLEGLKRLCEYTIAQDI 647 (717)
Q Consensus 615 ~~~~~~~~ll~~A~~~~~~~l~~~c~~~l~~~i 647 (717)
++++++...+++|.+|+++.+++.|.+.+..++
T Consensus 170 lspkta~~yYea~ckYgle~vk~kc~ewl~~nl 202 (488)
T KOG4682|consen 170 LSPKTACGYYEAACKYGLESVKKKCLEWLLNNL 202 (488)
T ss_pred cChhhhhHhhhhhhhhhhHHHHHHHHHHHHHhh
Confidence 789999999999999999999999999887763
No 388
>KOG2149 consensus Uncharacterized conserved protein [Function unknown]
Probab=29.81 E-value=3.8e+02 Score=27.63 Aligned_cols=111 Identities=15% Similarity=0.096 Sum_probs=72.2
Q ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHhhcCChHHHHHHHHcCChHHHHHhhccCChHHHHHHHHHHHHHhcCChhhHHHHH
Q 005044 251 LPTLILMLRSEDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLSSCCSESQREAALLLGQFAATDSDCKVHIV 330 (717)
Q Consensus 251 i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~l~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~l~ 330 (717)
+.-|+.-+++.+..++..|+.-|..+..+.+... ...-..+++.+..++.+.+..+|.....++..+....-.......
T Consensus 60 lkeLl~qlkHhNakvRkdal~glkd~l~s~p~~l-~~~~~~ll~~~~~~i~D~~~~vR~~~~qll~~~i~~~~~e~~sp~ 138 (393)
T KOG2149|consen 60 LKELLSQLKHHNAKVRKDALNGLKDLLKSHPAEL-QSHLYALLQKLRELILDDDSLVRDALYQLLDSLILPACKEDQSPM 138 (393)
T ss_pred HHHHHhhhcCchHhhhHHHHHHHHHHHHhChHHH-HHHHHHHHHHhhhhhcCccccHHHHHHHHHHHHHhhcchhhhcch
Confidence 5667778889999999999999998876655432 222244677777788888888888877777775422111111111
Q ss_pred hcCChHHHHHHhcCCCHHHHHHHHHHHHHhhc
Q 005044 331 QRGAVRPLIEMLQSPDVQLREMSAFALGRLAQ 362 (717)
Q Consensus 331 ~~~~l~~L~~~l~~~~~~v~~~a~~~L~~l~~ 362 (717)
-.=+++.+...|.+-.+.++..++..|.-+..
T Consensus 139 ~~l~~~yi~~AMThit~~i~~dslkfL~~Ll~ 170 (393)
T KOG2149|consen 139 VSLLMPYISSAMTHITPEIQEDSLKFLSLLLE 170 (393)
T ss_pred HHHHHHHHHHHHhhccHHHHHhhHHHHHHHHH
Confidence 11133445555666778888888887777765
No 389
>KOG2213 consensus Apoptosis inhibitor 5/fibroblast growth factor 2-interacting factor 2, and related proteins [Signal transduction mechanisms]
Probab=29.38 E-value=6.5e+02 Score=25.99 Aligned_cols=258 Identities=15% Similarity=0.094 Sum_probs=127.3
Q ss_pred HHHHHHcCCCHHHHHHHHHHHHHhhcCChHHHHHHHHcCChHHHHHhhccCChHHHHHHHHHHHHHhcCChh-----hHH
Q 005044 253 TLILMLRSEDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLSSCCSESQREAALLLGQFAATDSD-----CKV 327 (717)
Q Consensus 253 ~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~l~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~-----~~~ 327 (717)
.+++..+.+ ....+.|...|.+....-+.... .+++.-+.+..+.+..+|++|..-|-.+|.++.- ...
T Consensus 29 ~il~~~k~~-~k~k~lasq~ip~~fk~fp~la~-----~a~da~~d~~ed~d~~ir~qaik~lp~fc~~d~~~rv~d~l~ 102 (460)
T KOG2213|consen 29 GILKAVKGT-SKEKRLASQFIPRFFKHFPSLAD-----EAIDAQLDLCEDDDVGIRRQAIKGLPLFCKGDALSRVNDVLV 102 (460)
T ss_pred HHHHHhhcc-hHHHHHHHHHHHHHHhhCchhhh-----HHHHhhhccccccchhhHHHHHhccchhccCchhhhhHHHHH
Confidence 344444443 33455666677666555444322 2455566777778888888888888888755311 111
Q ss_pred HHHhcCChHHHHHHhcCCCHHHHHHHHHHHHHhh-c-CCCCchhhHhcCChHHHHHhhcCCChhHHHHHHHHHHhccC--
Q 005044 328 HIVQRGAVRPLIEMLQSPDVQLREMSAFALGRLA-Q-DMHNQAGIAHNGGLVPLLKLLDSKNGSLQHNAAFALYGLAD-- 403 (717)
Q Consensus 328 ~l~~~~~l~~L~~~l~~~~~~v~~~a~~~L~~l~-~-~~~~~~~l~~~~~l~~L~~ll~~~~~~v~~~a~~~L~~l~~-- 403 (717)
.+++.+-+..|.......+..+|+.+...|..=. . ..+.-..-++..++..+...|.+-..+--......|.++..
T Consensus 103 qLLnk~sl~~Lf~~~~~~D~~irek~l~fi~tKl~~l~~e~L~kevE~~iv~eikkal~dVtgeef~lfm~~L~~lk~~~ 182 (460)
T KOG2213|consen 103 QLLNKASLTGLFGQIEVGDEQIREKVLKFIRTKLITLKGEVLTKEVERHIVDEIKKALEDVTGEEFTLFMDILASLKSLQ 182 (460)
T ss_pred HHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHhhcccHHHhhhHHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhhccc
Confidence 2333333344444433357777777666554311 1 11112234455556666666665544444445556666643
Q ss_pred CCcchHHHHHhc-CccccccchhHHhhhHHHHHHHHHHHHHHh--------hhchHHHHHHHHh--hc---chhHHHHHH
Q 005044 404 NEDNVADFIRVG-GVQKLQDGEFIVQATKDCVAKTLKRLEEKI--------HGRVLNHLLYLMR--VA---EKGVQRRVA 469 (717)
Q Consensus 404 ~~~~~~~l~~~~-~i~~L~~~~~~~~~~~~~~~~~~~~l~~~~--------~~~~~~~L~~ll~--~~---~~~v~~~a~ 469 (717)
.......+.+.- ..+-+.+...-..+..+|+...++-+...+ .+..+..+..-+- .- ..+.+..-+
T Consensus 183 ~k~~~a~lqeLa~~~e~~a~ldaf~~sD~d~VdRfisCl~~AvPfFargapSskf~~y~n~~~ip~~fdkl~e~rkL~lL 262 (460)
T KOG2213|consen 183 TKAGEARLQELAEEQEGLADLDAFNVSDADYVDRFISCLLMAVPFFARGAPSSKFVEYLNKHIIPHHFDKLTEERKLDLL 262 (460)
T ss_pred CCCCHHHHHHHHHHHhhhhccCcccCCChHHHHHHHHHHHHhhhhhhcCCchhHHHHHHHhhhcccccccchHHHHHHHH
Confidence 234444444321 112222221111123344444444333221 2222222221110 11 245666777
Q ss_pred HHHHhccCCCCCceeeecCCCHHHHHHHhcC------CCchhhhhhHHHHHHhhhc
Q 005044 470 LALAHLCSPDDQRTIFIDGGGLELLLGLLGS------TNPKQQLDGAVALFKLANK 519 (717)
Q Consensus 470 ~aL~~l~~~~~~~~~~~~~~~l~~L~~ll~~------~~~~v~~~a~~~l~~L~~~ 519 (717)
.+|..++.....+ .....+|.++++|.. .-++.+..-+.++.++.++
T Consensus 263 K~lAEMss~ttaq---~a~q~Lpsi~elLk~yMpa~kt~ee~~fsyvEClly~~h~ 315 (460)
T KOG2213|consen 263 KALAEMSSYTTAQ---AARQMLPSIVELLKEYMPAPKTGEEMQFSYVECLLYALHH 315 (460)
T ss_pred HHHHHhCccchHH---HHHHHHHHHHHHHHHhcccCCccHHHHHHHHHHHHHHHHH
Confidence 7777776665321 123457777777653 3345566777777777665
No 390
>PF12074 DUF3554: Domain of unknown function (DUF3554); InterPro: IPR022716 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is typically between 287 to 356 amino acids in length. This domain is found associated with PF02985 from PFAM.
Probab=29.34 E-value=6.2e+02 Score=25.74 Aligned_cols=212 Identities=15% Similarity=0.093 Sum_probs=97.0
Q ss_pred HhHHHHHHHHhcCChhhHHHHHhCCChHHHHHHHhccccCCCccchhHHHHHHHHHHHHHhhcC-chhhhHHHhcCCcHH
Q 005044 133 EKGSAFALGLLAVKPEHQQLIVDNGALSHLVNLLKRHMDSNCSRAVNSVIRRAADAITNLAHEN-SSIKTRVRMEGGIPP 211 (717)
Q Consensus 133 ~~~a~~~L~~l~~~~~~~~~~~~~~~i~~L~~lL~~~~~~~~~~~~~~~~~~a~~~L~~l~~~~-~~~~~~~~~~~~i~~ 211 (717)
|.....+|..+.. .. ....++..+..++....++ ......+.++..=+..- .+. ....+..
T Consensus 4 r~~~~~~L~~l~~-~~-----~s~~i~~~l~~~~~KE~nE-------~aL~~~l~al~~~~~~~~~~~-----~~~~~~~ 65 (339)
T PF12074_consen 4 RVLHASMLSSLPS-SS-----LSSKIVQGLSPLLSKESNE-------AALSALLSALFKHLFFLSSEL-----PKKVVDA 65 (339)
T ss_pred HHHHHHHHHhCCC-cc-----hHHHHHHHHHHHHHhhcCH-------HHHHHHHHHHHHHHHHhCcCC-----CHHHHHH
Confidence 4455566666553 11 2223456677777776553 44455555544333211 111 1224456
Q ss_pred HHHhhcCCCHHHHHHHHHHHHHhhccC-hhhHHHHHhcCCHHHHHHHHc----CCCHHH----HHHHHHHHHHhhcC-Ch
Q 005044 212 LVELLEFTDTKVQRAAAGALRTLAFKN-DENKNQIVECNALPTLILMLR----SEDSAI----HYEAVGVIGNLVHS-SP 281 (717)
Q Consensus 212 L~~ll~~~~~~v~~~a~~~L~~L~~~~-~~~~~~~~~~g~i~~L~~ll~----~~~~~v----~~~a~~~L~~l~~~-~~ 281 (717)
+..-+++..+.+|+.-+..+..+.... ......++. .+++.|.+.++ ++-+.. ...+.-.+. +... .+
T Consensus 66 ~~kGl~~kk~~vR~~w~~~~~~~~~~~~~~~~~~~~~-~~~~~L~~~~~~~~~~p~~~~~~~~~~~a~~~l~-~~~~~~~ 143 (339)
T PF12074_consen 66 FKKGLKDKKPPVRRAWLLCLGEALWESPNSDSLKFAE-PFLPKLLQSLKEASANPLQSAQNGELVGAYVLLA-LSSWKLD 143 (339)
T ss_pred HHHHhcCCCCcHHHHHHHHHHHHHhhccCchHHHHHH-HHHHHHHHHHHHHHhCCCCccccccHHHHHHHHH-hccccch
Confidence 666777777778888877777776400 111122222 35677777664 222211 112222222 1110 01
Q ss_pred HHHH-HHH----HcCChHHHH---Hhhcc-CChHHHHHHHHHHHHHhcCChhhHHHHHhcCChHHHHHHhcCC--CHHHH
Q 005044 282 NIKK-EVL----AAGALQPVI---GLLSS-CCSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQSP--DVQLR 350 (717)
Q Consensus 282 ~~~~-~~~----~~g~l~~L~---~ll~~-~~~~~~~~a~~~L~~l~~~~~~~~~~l~~~~~l~~L~~~l~~~--~~~v~ 350 (717)
.... ... ..+-=+.++ +++.. .+.+.....+.++..+..+.......-.....-..++.++-++ .+.+|
T Consensus 144 ~~~~~~~~~~~l~~~~kps~ll~~kvyskl~~~~d~~w~~~al~~~~~~~~~~~~~~~~~~~~~a~i~ll~s~~~~~~vR 223 (339)
T PF12074_consen 144 KIDSKNISFWSLALDPKPSFLLSEKVYSKLASEEDLCWLLRALEALLSDHPSELSSDKSSAWAQAFIYLLCSSNVSWKVR 223 (339)
T ss_pred hhhhhhhhhhhhccCCCcchhcCHHHHhccCCHhHHHHHHHHHHHHHhcchhhhhhhHHHHHHHHHHHHHHcCCCCHHHH
Confidence 1000 000 000000000 12222 2334444455555555432221111000123456677777776 88999
Q ss_pred HHHHHHHHHhhcCC
Q 005044 351 EMSAFALGRLAQDM 364 (717)
Q Consensus 351 ~~a~~~L~~l~~~~ 364 (717)
..|..++..+....
T Consensus 224 ~~A~~~l~~l~~~~ 237 (339)
T PF12074_consen 224 RAALSALKKLYASN 237 (339)
T ss_pred HHHHHHHHHHHHhC
Confidence 99999999887643
No 391
>KOG1992 consensus Nuclear export receptor CSE1/CAS (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=29.00 E-value=9.4e+02 Score=27.68 Aligned_cols=239 Identities=15% Similarity=0.144 Sum_probs=117.7
Q ss_pred HHHHHHHHHHHHhhccChhhHHHHHhcCCHHHHHHHHcCC-----CHHHHHHHHHHHHHhhcCChHHHHHHHHcCChHHH
Q 005044 222 KVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSE-----DSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPV 296 (717)
Q Consensus 222 ~v~~~a~~~L~~L~~~~~~~~~~~~~~g~i~~L~~ll~~~-----~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~l~~L 296 (717)
.++...|..+.--+...++.-..+... .+.....+|.+. .+.....|+..|.+++.. +.....+...+++..+
T Consensus 262 ~lka~ICEi~~LY~~kYeEef~~fl~~-fv~~~W~LL~~~s~~~kyD~Lvs~Al~FLt~V~~r-~~y~~~F~~~~vl~~i 339 (960)
T KOG1992|consen 262 KLKAQICEIFNLYATKYEEEFQPFLPD-FVTATWNLLVSTSPDTKYDYLVSKALQFLTSVSRR-PHYAELFEGENVLAQI 339 (960)
T ss_pred HHHHHHHHHHHHHHHhhHHHHHhhHHH-HHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHhh-hhhHhhhcchHHHHHH
Confidence 455566666665555444444333321 333333444432 234555677777777543 2222233333333333
Q ss_pred HHhhccCChHHHHHHHHHHHHHhcCChhhHHHHHhcCChHHHHHHhcCCCHHH-HHHHHHHHHHhhcCCCCchhhHhcCC
Q 005044 297 IGLLSSCCSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQSPDVQL-REMSAFALGRLAQDMHNQAGIAHNGG 375 (717)
Q Consensus 297 ~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~l~~~~~l~~L~~~l~~~~~~v-~~~a~~~L~~l~~~~~~~~~l~~~~~ 375 (717)
.+.. ++.|++.. ..-.++.+.+-+..+-.-++..|.+. |+.|+..+..|+..-+.+..-+-.+-
T Consensus 340 ~e~V-------------vlpN~~lR--~eDeElFED~pleYiRRDlEGsDvdTRRR~a~dlvrgL~~~fe~~vt~v~~~~ 404 (960)
T KOG1992|consen 340 CEKV-------------VLPNLILR--EEDEELFEDNPLEYIRRDLEGSDVDTRRRAAIDLVRGLCKNFEGQVTGVFSSE 404 (960)
T ss_pred HHhh-------------cccccccc--hhhHHHhccCHHHHHHHhcccCCcchhHHHHHHHHHHHHHHhcchhHHHHHHH
Confidence 3322 33344321 12245667777888888887776665 45788889999986554432222222
Q ss_pred hHHHHHh-hc--CCChhHHHHHHHHHHhccCCCc-------------chHHHHHhcCccccccchhH-HhhhHHHHH---
Q 005044 376 LVPLLKL-LD--SKNGSLQHNAAFALYGLADNED-------------NVADFIRVGGVQKLQDGEFI-VQATKDCVA--- 435 (717)
Q Consensus 376 l~~L~~l-l~--~~~~~v~~~a~~~L~~l~~~~~-------------~~~~l~~~~~i~~L~~~~~~-~~~~~~~~~--- 435 (717)
+..+++- .. +.+|.-...+......++.... +...|.....++.|.+.... +.-.+....
T Consensus 405 v~~~l~~y~~nPS~nWk~kd~aiyL~talaik~~t~~~Gvtstn~lvdv~~Ff~~~ilp~L~s~~vn~~pilka~aIKy~ 484 (960)
T KOG1992|consen 405 VQRLLDQYSKNPSGNWKKKDRAIYLVTALAIKGQTAKHGVTSTNELVDVVDFFANQILPDLLSPNVNEFPILKADAIKYI 484 (960)
T ss_pred HHHHHHHhccCCCccccccchhhhhhHHHHhhcchhhcceeeccccccHHHHHHHHhhHHhccCccccccchhhccccee
Confidence 3333322 21 4456656666666555543211 11122222222222221100 000000000
Q ss_pred -HHHHHHHHHhhhchHHHHHHHHhhcchhHHHHHHHHHHhccC
Q 005044 436 -KTLKRLEEKIHGRVLNHLLYLMRVAEKGVQRRVALALAHLCS 477 (717)
Q Consensus 436 -~~~~~l~~~~~~~~~~~L~~ll~~~~~~v~~~a~~aL~~l~~ 477 (717)
...+++....--..+|.++..|.++.+-+...|+.++-.+-.
T Consensus 485 ~~FR~ql~~~~lm~~~p~li~~L~a~s~vvhsYAA~aiEkil~ 527 (960)
T KOG1992|consen 485 YTFRNQLGKEHLMALLPRLIRFLEAESRVVHSYAAIAIEKLLT 527 (960)
T ss_pred eeecccCChHHHHHHHHHHHHhccCcchHHHHHHHHHHHhccc
Confidence 001112222233478999999999999999999999988843
No 392
>PF09324 DUF1981: Domain of unknown function (DUF1981); InterPro: IPR015403 This domain is functionally uncharacterised and found in various plant and yeast protein transport proteins. It is noramlly associated with and C-termianl to the SEC7 domain. The SEC7 domain was named after the first protein found to contain such a region []. It has been shown to be linked with guanine nucleotide exchange function [, ].
Probab=28.73 E-value=1e+02 Score=23.92 Aligned_cols=65 Identities=17% Similarity=0.268 Sum_probs=43.1
Q ss_pred hcCChHHHHHHhcC-CCHHHHHHHHHHHHHhhcCCCCchhhHhcCChHHHHHhh----cCCChhHHHHHHHHHH
Q 005044 331 QRGAVRPLIEMLQS-PDVQLREMSAFALGRLAQDMHNQAGIAHNGGLVPLLKLL----DSKNGSLQHNAAFALY 399 (717)
Q Consensus 331 ~~~~l~~L~~~l~~-~~~~v~~~a~~~L~~l~~~~~~~~~l~~~~~l~~L~~ll----~~~~~~v~~~a~~~L~ 399 (717)
+..++.++..++.. .+.++|+..+.++.++..... .-+..| -+.+..++ .+++..+...|..++.
T Consensus 15 Q~~fL~Pf~~i~~~~~~~~vre~il~ci~qil~~~~---~~i~SG-W~~if~il~~aa~~~~e~lv~~af~~~~ 84 (86)
T PF09324_consen 15 QKDFLKPFEYIMSNNPSIDVRELILECILQILQSRG---ENIKSG-WKVIFSILRAAAKDNDESLVRLAFQIVQ 84 (86)
T ss_pred HHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHHhH---HHHHhc-cHHHHHHHHHHHhCCCccHHHHHHHHHh
Confidence 34567778888644 688999999999999986432 233444 44444444 4556777777766654
No 393
>smart00549 TAFH TAF homology. Domain in Drosophila nervy, CBFA2T1, human TAF105, human TAF130, and Drosophila TAF110. Also known as nervy homology region 1 (NHR1).
Probab=27.98 E-value=3e+02 Score=21.62 Aligned_cols=70 Identities=16% Similarity=0.250 Sum_probs=44.3
Q ss_pred ChHHHHHhhcCCC-hhHHHHHHHHHHhccCCCcchHHHHHhcCccccccchhHHhhhHHHHHHHHHHHHHHhhhchHHHH
Q 005044 375 GLVPLLKLLDSKN-GSLQHNAAFALYGLADNEDNVADFIRVGGVQKLQDGEFIVQATKDCVAKTLKRLEEKIHGRVLNHL 453 (717)
Q Consensus 375 ~l~~L~~ll~~~~-~~v~~~a~~~L~~l~~~~~~~~~l~~~~~i~~L~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~L 453 (717)
++..|+++-.+.+ +++-..+-..+..+....-..+.|. .+++....+..-|.+
T Consensus 8 FL~tLi~ls~~~~qpe~~~~Vr~LV~~L~~~~i~~EeF~--------------------------~~Lq~~lns~~qP~l 61 (92)
T smart00549 8 FLTTLIQLSNDISQPEVAERVRTLVLGLVNGTITAEEFT--------------------------SRLQEALNSPLQPYL 61 (92)
T ss_pred HHHHHHHHhcCCCcchHHHHHHHHHHHHHhCCCCHHHHH--------------------------HHHHHHHcCCCCchh
Confidence 4455666666666 7777777666776665443333333 345555666677888
Q ss_pred HHHHhhcchhHHHHHHH
Q 005044 454 LYLMRVAEKGVQRRVAL 470 (717)
Q Consensus 454 ~~ll~~~~~~v~~~a~~ 470 (717)
+.+|+..-|.+|.....
T Consensus 62 vPFLK~slp~Lr~~l~~ 78 (92)
T smart00549 62 IPFLKNSLPLLRRELLH 78 (92)
T ss_pred HHHHHHhhHHHHHHHHH
Confidence 88898887777765443
No 394
>KOG4350 consensus Uncharacterized conserved protein, contains BTB/POZ domain [General function prediction only]
Probab=27.93 E-value=52 Score=33.29 Aligned_cols=58 Identities=12% Similarity=0.197 Sum_probs=41.3
Q ss_pred cceEcCCCCHHHHHHHHHHHhcCcc-c------------cchhhHHHHHHHHHhhChHhHHHHHHHHHHhc
Q 005044 589 RDIEIPNIRWEVFELMMRFIYTGSV-D------------VTLDIAQDLLRAADQYLLEGLKRLCEYTIAQD 646 (717)
Q Consensus 589 ~~i~l~~~~~~~~~~~l~~~Yt~~~-~------------~~~~~~~~ll~~A~~~~~~~l~~~c~~~l~~~ 646 (717)
+.+.+.+++.+.+-.+|.....-.+ + +..+|+..++.+|..|++++|..+|..|+-++
T Consensus 106 g~~~l~~~~ed~lld~LslAh~Ygf~~Le~aiSeYl~~iL~~~NvCmifdaA~ly~l~~Lt~~C~mfmDrn 176 (620)
T KOG4350|consen 106 GKIDLAGVEEDILLDYLSLAHRYGFIQLETAISEYLKEILKNENVCMIFDAAYLYQLTDLTDYCMMFMDRN 176 (620)
T ss_pred cceecccchHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHcccceeeeeeHHHHhcchHHHHHHHHHHhcC
Confidence 3577777776666555554432211 1 34567888999999999999999999988765
No 395
>PF06012 DUF908: Domain of Unknown Function (DUF908); InterPro: IPR010309 This is a domain of unknown function found at the N terminus of a family of E3 ubiquitin protein ligases, including yeast TOM1, many of which appear to play a role in mRNA transcription and processing. This domain is found in association with and immediately N-terminal to another domain of unknown function: IPR010314 from INTERPRO.
Probab=27.89 E-value=2.4e+02 Score=28.67 Aligned_cols=62 Identities=15% Similarity=0.174 Sum_probs=44.9
Q ss_pred HHHHHHHHHHHhhcChhhHHHHHhCC--ChHHHHHhhcCCCCCccccCCCccchHHHhHHHHHHHHhc-CChhh
Q 005044 79 AAKRATHVLAELAKNEEVVNWIVEGG--AVPALVKHLQAPPTSEADRNLKPFEHEVEKGSAFALGLLA-VKPEH 149 (717)
Q Consensus 79 ~~~~a~~~L~~l~~~~~~~~~~~~~g--~i~~L~~lL~~~~~~~~~~~~~~~~~~v~~~a~~~L~~l~-~~~~~ 149 (717)
++..|+..+..+...+.....+...+ .+.-|+++++.+.. .+..+|..|+.+|..++ .....
T Consensus 238 iRllAi~~l~~~~~~~~~~~~~l~~dp~l~~eL~eLi~~~~~---------v~~~i~~~Al~~L~ai~~~~~~~ 302 (329)
T PF06012_consen 238 IRLLAIANLVYIHPESQFSSKLLEQDPELVNELVELISPEEK---------VPMDIQTAALRALEAISHKRPRC 302 (329)
T ss_pred HHHHHHHHHHhhCCCHHHHHHHHhcChHHHHHHHHHhCCCCC---------CCHHHHHHHHHHHHHHHhccccH
Confidence 45556666655555666667777776 89999999987653 23489999999999999 44443
No 396
>PF12397 U3snoRNP10: U3 small nucleolar RNA-associated protein 10 ; InterPro: IPR022125 This domain family is found in eukaryotes, and is approximately 120 amino acids in length. The family is found in association with PF08146 from PFAM. This family is the protein associated with U3 snoRNA which is involved in the processing of pre-rRNA.
Probab=27.36 E-value=3.6e+02 Score=22.37 Aligned_cols=66 Identities=24% Similarity=0.174 Sum_probs=42.2
Q ss_pred CcHHHHHhhc-CCCHHHHHHHHHHHHHhhccChhhHHHHHhcCCHHHHHHH-HcCCCHHH-HHHHHHHHHHhhcC
Q 005044 208 GIPPLVELLE-FTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILM-LRSEDSAI-HYEAVGVIGNLVHS 279 (717)
Q Consensus 208 ~i~~L~~ll~-~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~g~i~~L~~l-l~~~~~~v-~~~a~~~L~~l~~~ 279 (717)
.+|.+...+. +..++.+..+...+..|+...+ .... ++..+++. +++..... ...++.+|..++..
T Consensus 7 lLP~l~~~L~~s~~~d~~~a~ymIl~~La~k~~-L~~~-----~l~~l~~~i~~~~~~~~~~~~~l~~L~~l~q~ 75 (121)
T PF12397_consen 7 LLPFLLKGLKSSSSPDLQAAAYMILSVLASKVP-LSDE-----VLNALMESILKNWTQETVQRQALICLIVLCQS 75 (121)
T ss_pred HHHHHHHHHccCCcHHHHHHHHHHHHHHHhhcC-CcHH-----HHHHHHHHHHhccccchhHHHHHHHHHHHHHc
Confidence 4678888888 6788999999999999997332 2222 23333332 23332222 47788888888744
No 397
>PF14631 FancD2: Fanconi anaemia protein FancD2 nuclease; PDB: 3S4W_B.
Probab=26.56 E-value=1.4e+03 Score=28.87 Aligned_cols=69 Identities=17% Similarity=0.231 Sum_probs=45.8
Q ss_pred cCChHHHHHH----hcCCCHHHHHHHHHHHHHhhcCCCCchhhHhcCChHHHHHhhcCCChhHHHHHHHHHHhccC
Q 005044 332 RGAVRPLIEM----LQSPDVQLREMSAFALGRLAQDMHNQAGIAHNGGLVPLLKLLDSKNGSLQHNAAFALYGLAD 403 (717)
Q Consensus 332 ~~~l~~L~~~----l~~~~~~v~~~a~~~L~~l~~~~~~~~~l~~~~~l~~L~~ll~~~~~~v~~~a~~~L~~l~~ 403 (717)
...++.++.+ +++.++.++..+......+-...+ ...+..++..|+..+-+++..-...|+.+|..|+.
T Consensus 430 ~~~f~siL~la~~Ll~S~e~~v~~FG~~~Y~~lF~~fd---s~~qqeVv~~Lvthi~sg~~~ev~~aL~vL~~L~~ 502 (1426)
T PF14631_consen 430 KDYFPSILSLAQSLLRSKEPSVREFGSHLYKYLFKEFD---SYCQQEVVGALVTHIGSGNSQEVDAALDVLCELAE 502 (1426)
T ss_dssp TTSHHHHHHHHHHHHTSSSHHHHHHHHHHHHHHHHSS----HHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHhhcc---chhHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHh
Confidence 3456666655 467889999888887777665442 23344467777777766666555788999998885
No 398
>PHA02713 hypothetical protein; Provisional
Probab=26.13 E-value=81 Score=34.86 Aligned_cols=34 Identities=24% Similarity=0.277 Sum_probs=31.2
Q ss_pred hcCChhcHHHHHHHHHHcCcHHHHHHHHHHHHHh
Q 005044 645 QDISLENVSSMYELSEAFHAISLRHTCILYIMEH 678 (717)
Q Consensus 645 ~~i~~~n~~~~~~~a~~~~~~~L~~~~~~~i~~~ 678 (717)
..++.+|+..++..|..++.+.|++.|.+|+.++
T Consensus 89 ~~i~~~nv~~ll~aA~~lqi~~l~~~C~~~l~~~ 122 (557)
T PHA02713 89 RHISSMNVIDVLKCADYLLIDDLVTDCESYIKDY 122 (557)
T ss_pred CCCCHHHHHHHHHHHHHHCHHHHHHHHHHHHHhh
Confidence 3488999999999999999999999999999865
No 399
>KOG2549 consensus Transcription initiation factor TFIID, subunit TAF6 (also component of histone acetyltransferase SAGA) [Transcription]
Probab=25.89 E-value=4.1e+02 Score=28.74 Aligned_cols=129 Identities=11% Similarity=-0.027 Sum_probs=65.5
Q ss_pred HHHHHHhhhhhccccch--HHHHHHHHHHHHHHHHhhcChhhHHHHHhCCChHHHHHhhcCCCCCccccCCCccchHHHh
Q 005044 57 SEVSAQVNVLNTTFSWL--EADRAAAKRATHVLAELAKNEEVVNWIVEGGAVPALVKHLQAPPTSEADRNLKPFEHEVEK 134 (717)
Q Consensus 57 ~~i~~l~~~L~~~~~~~--~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~g~i~~L~~lL~~~~~~~~~~~~~~~~~~v~~ 134 (717)
..+|.++.++.+..... ..+.......++....+.+++.....-.-...+|.++..+-...-. ........+.+|.
T Consensus 239 ~LlPyFv~fIae~vs~ni~~~nL~lL~~lm~m~rSLl~Np~i~lepYlh~L~PSvlTCvVsk~l~--~~p~~dnhwaLRD 316 (576)
T KOG2549|consen 239 QLLPYFVTFIAEGVSVNIVQNNLELLIYLMRMVRSLLDNPNIFLEPYLHQLVPSVLTCVVSKNLC--LRPELDNHWALRD 316 (576)
T ss_pred HHHHHHHHHHhhheeeccccccHHHHHHHHHHHHHHhcCCccchhhHHHHHhhHHHHhhhhhhcc--CCccccchHHHHH
Confidence 34556666665554433 2344455666777777777665443333344577777665332210 0111222348899
Q ss_pred HHHHHHHHhcCChhhHHHHHhCCChHHHHHHHhccccCCCccchhHHHHHHHHHHHHHh
Q 005044 135 GSAFALGLLAVKPEHQQLIVDNGALSHLVNLLKRHMDSNCSRAVNSVIRRAADAITNLA 193 (717)
Q Consensus 135 ~a~~~L~~l~~~~~~~~~~~~~~~i~~L~~lL~~~~~~~~~~~~~~~~~~a~~~L~~l~ 193 (717)
-|+..+..++.+-...-.-....++..+.+.+.+.... +....-++..|..|-
T Consensus 317 fAA~ll~~i~k~f~~~y~~L~~Rit~tl~k~l~D~~~~------~st~YGai~gL~~lg 369 (576)
T KOG2549|consen 317 FAARLLAQICKNFSTLYNNLQPRITRTLSKALLDNKKP------LSTHYGAIAGLSELG 369 (576)
T ss_pred HHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHhcCCCCC------chhhhhHHHHHHHhh
Confidence 99999988882211111113334455566655554332 144444555554443
No 400
>KOG4524 consensus Uncharacterized conserved protein [Function unknown]
Probab=25.08 E-value=2.5e+02 Score=32.48 Aligned_cols=93 Identities=15% Similarity=0.079 Sum_probs=64.4
Q ss_pred CcHHHHHhhcCCCHHHHHHHHHHHHHhh----ccChhhHHHHHhcCCHHHHHHHHcCCCHHHHHHHHHHHHHhhcCChHH
Q 005044 208 GIPPLVELLEFTDTKVQRAAAGALRTLA----FKNDENKNQIVECNALPTLILMLRSEDSAIHYEAVGVIGNLVHSSPNI 283 (717)
Q Consensus 208 ~i~~L~~ll~~~~~~v~~~a~~~L~~L~----~~~~~~~~~~~~~g~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~ 283 (717)
++..-..+|.+.+-.+|..++.+|.... ...+.....+ ....+.++..+...++-+...|+.+|.+++....+.
T Consensus 804 Il~r~~~~LS~e~l~irvkaLdvl~~gl~~La~~~n~LlPlv--hq~W~~vie~~~~k~~L~v~~a~~~i~~m~~~sgDF 881 (1014)
T KOG4524|consen 804 ILGRGIHLLSHESLRIRVKALDVLSLGLPLLATYHNLLLPLV--HQTWPSVIECLLCKDPLIVQRAFSCIEQMGKYSGDF 881 (1014)
T ss_pred HHHHHHHHhcchhHHHHHHHHHHHHhccHHHhccchhHhHHH--HhhhhHHHHHHhcCchHHHHHHHHHHHHHHHHhhhH
Confidence 3444556777888899999988877532 2122222222 346888999999999999999999999998766655
Q ss_pred HHHHHHcCChHHHHHhhcc
Q 005044 284 KKEVLAAGALQPVIGLLSS 302 (717)
Q Consensus 284 ~~~~~~~g~l~~L~~ll~~ 302 (717)
...-....++|.+-.++.+
T Consensus 882 v~sR~l~dvlP~l~~~~~~ 900 (1014)
T KOG4524|consen 882 VASRFLEDVLPWLKHLCQD 900 (1014)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 4444445677777766654
No 401
>PF11459 DUF2893: Protein of unknwon function (DUF2893); InterPro: IPR021561 This is a bacterial family of uncharacterised proteins.
Probab=24.64 E-value=3e+02 Score=20.44 Aligned_cols=63 Identities=11% Similarity=0.112 Sum_probs=41.2
Q ss_pred HHHHHHHhcCccccchhhHHHHHHHHHhhChHhHHHHHHHHHHhcCChhcHHHHHHHHHHcCcHHHH
Q 005044 602 ELMMRFIYTGSVDVTLDIAQDLLRAADQYLLEGLKRLCEYTIAQDISLENVSSMYELSEAFHAISLR 668 (717)
Q Consensus 602 ~~~l~~~Yt~~~~~~~~~~~~ll~~A~~~~~~~l~~~c~~~l~~~i~~~n~~~~~~~a~~~~~~~L~ 668 (717)
+.+++++|.-.-..+.+.+.++++-..-+.-..|... +...-++...-.++.+|+.++.++.+
T Consensus 5 rA~LE~l~~~p~~~s~e~a~~l~egL~nLrp~~lq~L----L~~C~svKvkRLfl~lA~~~~h~W~~ 67 (69)
T PF11459_consen 5 RAILELLSEVPKRQSFEEADELMEGLRNLRPRVLQEL----LEHCTSVKVKRLFLYLAERAGHPWFK 67 (69)
T ss_pred HHHHHHHHhCCccCCHHHHHHHHHHHhhcCHHHHHHH----HHHCccHHHHHHHHHHHHHcCCchHh
Confidence 4677888877777777777777777666654333322 33344455556677899998877654
No 402
>PF11791 Aconitase_B_N: Aconitate B N-terminal domain; InterPro: IPR015933 Aconitase (aconitate hydratase; 4.2.1.3 from EC) is an iron-sulphur protein that contains a [4Fe-4S]-cluster and catalyses the interconversion of isocitrate and citrate via a cis-aconitate intermediate. Aconitase functions in both the TCA and glyoxylate cycles, however unlike the majority of iron-sulphur proteins that function as electron carriers, the [4Fe-4S]-cluster of aconitase reacts directly with an enzyme substrate. In eukaryotes there is a cytosolic form (cAcn) and a mitochondrial form (mAcn) of the enzyme. In bacteria there are also 2 forms, aconitase A (AcnA) and B (AcnB). Several aconitases are known to be multi-functional enzymes with a second non-catalytic, but essential function that arises when the cellular environment changes, such as when iron levels drop [, ]. Eukaryotic cAcn and mAcn, and bacterial AcnA have the same domain organisation, consisting of three N-terminal alpha/beta/alpha domains, a linker region, followed by a C-terminal 'swivel' domain with a beta/beta/alpha structure (1-2-3-linker-4), although mAcn is small than cAcn. However, bacterial AcnB has a different organisation: it contains an N-terminal HEAT-like domain, followed by the 'swivel' domain, then the three alpha/beta/alpha domains (HEAT-4-1-2-3) []. Below is a description of some of the multi-functional activities associated with different aconitases. Eukaryotic mAcn catalyses the second step of the mitochondrial TCA cycle, which is important for energy production, providing high energy electrons in the form of NADH and FADH2 to the mitochondrial oxidative phosphorylation pathway []. The TCA cycle also provides precursors for haem and amino acid production. This enzyme has a second, non-catalytic but essential role in mitochondrial DNA (mtDNA) maintenance: mAcn acts to stabilise mtDNA, forming part of mtDNA protein-DNA complexes known as nucleoids. mAcn is thought to reversibly model nucleoids to directly influence mitochondrial gene expression in response to changes in the cellular environment. Therefore, mAcn can influence the expression of components of the oxidative phosphorylation pathway encoded in mtDNA. Eukaryotic cAcn enzyme balances the amount of citrate and isocitrate in the cytoplasm, which in turn creates a balance between the amount of NADPH generated from isocitrate by isocitrate dehydrogenase with the amount of acetyl-CoA generated from citrate by citrate lyase. Fatty acid synthesis requires both NADPH and acetyl-CoA, as do other metabolic processes, including the need for NADPH to combat oxidative stress. The enzymatic form of cAcn predominates when iron levels are normal, but if they drop sufficiently to cause the disassembly of the [4Fe-4S]-cluster, then cAcn undergoes a conformational change from a compact enzyme to a more open L-shaped protein known as iron regulatory protein 1 (IRP1; or IRE-binding protein 1, IREBP1) [, ]. As IRP1, the catalytic site and the [4Fe-4S]-cluster are lost, and two new RNA-binding sites appear. IRP1 functions in the post-transcriptional regulation of genes involved in iron metabolism - it binds to mRNA iron-responsive elements (IRE), 30-nucleotide stem-loop structures at the 3' or 5' end of specific transcripts. Transcripts containing an IRE include ferritin L and H subunits (iron storage), transferrin (iron plasma chaperone), transferrin receptor (iron uptake into cells), ferroportin (iron exporter), mAcn, succinate dehydrogenase, erythroid aminolevulinic acid synthetase (tetrapyrrole biosynthesis), among others. If the IRE is in the 5'-UTR of the transcript (e.g. in ferritin mRNA), then IRP1-binding prevents its translation by blocking the transcript from binding to the ribosome. If the IRE is in the 3'-UTR of the transcript (e.g. transferrin receptor), then IRP1-binding protects it from endonuclease degradation, thereby prolonging the half-life of the transcript and enabling it to be translated []. IRP2 is another IRE-binding protein that binds to the same transcripts as IRP1. However, since IRP1 is predominantly in the enzymatic cAcn form, it is IRP2 that acts as the major metabolic regulator that maintains iron homeostasis []. Although IRP2 is homologous to IRP1, IRP2 lacks aconitase activity, and is known only to have a single function in the post-transcriptional regulation of iron metabolism genes []. In iron-replete cells, IRP2 activity is regulated primarily by iron-dependent degradation through the ubiquitin-proteasomal system. Bacterial AcnB is also known to be multi-functional. In addition to its role in the TCA cycle, AcnB was shown to be a post-transcriptional regulator of gene expression in Escherichia coli and Salmonella enterica [, ]. In S. enterica, AcnB initiates a regulatory cascade controlling flagella biosynthesis through an interaction with the ftsH transcript, an alternative RNA polymerase sigma factor. This binding lowers the intracellular concentration of FtsH protease, which in turn enhances the amount of RNA polymerase sigma32 factor (normally degraded by FtsH protease), and sigma32 then increases the synthesis of chaperone DnaK, which in turn promotes the synthesis of the flagellar protein FliC. AcnB regulates the synthesis of other proteins as well, such as superoxide dismutase (SodA) and other enzymes involved in oxidative stress. This entry represents the N-terminal HEAT-like domain, which is present in bacterial aconitase (AcnB), but not in AcnA or eukaryotic cAcn/IRP2 or mAcn. This domain is multi-helical, forming two curved layers in a right-handed alpha-alpha superhelix. HEAT-like domains are usually implicated in protein-protein interactions. The HEAT-like domain and the 'swivel' domain that follows it were shown to be sufficient for dimerisation and for AcnB binding to mRNA. An iron-mediated dimerisation mechanism may be responsible for switching AcnB between its catalytic and regulatory roles, as dimerisation requires iron while mRNA binding is inhibited by iron. More information about these proteins can be found at Protein of the Month: Aconitase [].; GO: 0003994 aconitate hydratase activity, 0006099 tricarboxylic acid cycle; PDB: 1L5J_B.
Probab=24.62 E-value=1.7e+02 Score=25.47 Aligned_cols=26 Identities=38% Similarity=0.480 Sum_probs=11.7
Q ss_pred hHHHHHhhcCCChhHHHHHHHHHHhc
Q 005044 376 LVPLLKLLDSKNGSLQHNAAFALYGL 401 (717)
Q Consensus 376 l~~L~~ll~~~~~~v~~~a~~~L~~l 401 (717)
+.+|+++|.+++..+...|+.+|.+-
T Consensus 96 V~~LI~~L~~~d~~lA~~Aa~aLk~T 121 (154)
T PF11791_consen 96 VQPLIDLLKSDDEELAEEAAEALKNT 121 (154)
T ss_dssp HHHHHHGG--G-TTTHHHHHHHHHT-
T ss_pred HHHHHHHHcCCcHHHHHHHHHHHHhh
Confidence 44455555555555555555555544
No 403
>PF04821 TIMELESS: Timeless protein; InterPro: IPR006906 The timeless gene in Drosophila melanogaster (Fruit fly) and its homologues in a number of other insects and mammals (including human) are involved in circadian rhythm control []. This family includes related proteins from a number of fungal species and from Arabidopsis thaliana.
Probab=24.37 E-value=6.8e+02 Score=24.49 Aligned_cols=38 Identities=16% Similarity=-0.011 Sum_probs=23.7
Q ss_pred HHHHHhCCChH-HHHHhhcCCCCCccccCCCccchHHHhHHHHHHHHhc
Q 005044 97 VNWIVEGGAVP-ALVKHLQAPPTSEADRNLKPFEHEVEKGSAFALGLLA 144 (717)
Q Consensus 97 ~~~~~~~g~i~-~L~~lL~~~~~~~~~~~~~~~~~~v~~~a~~~L~~l~ 144 (717)
+..+.+.+.++ -|+.+|.+... ++.+...+++.|.+|+
T Consensus 33 ~r~lg~~~iv~~DLiPiL~~~~~----------~~~l~~~~l~LLV~LT 71 (266)
T PF04821_consen 33 RRQLGEWNIVQKDLIPILISYKD----------DDKLFLACLRLLVNLT 71 (266)
T ss_pred HHHHHHhchhhhhHHHHHHhccC----------chHHHHHHHHHHHHhC
Confidence 33444444444 45555554433 2389999999999998
No 404
>PF08389 Xpo1: Exportin 1-like protein; InterPro: IPR013598 The exchange of macromolecules between the nucleus and cytoplasm takes place through nuclear pore complexes within the nuclear membrane. Active transport of large molecules through these pore complexes require carrier proteins, called karyopherins (importins and exportins), which shuttle between the two compartments. This domain is found close to the N terminus of yeast exportin 1 (Xpo1, Crm1, P14068 from SWISSPROT), as well as adjacent to the N-terminal domain of importin-beta (IPR001494 from INTERPRO). Exportin 1 is a nuclear export receptor that translocates proteins out of the nucleus; it interacts with leucine-rich nuclear export signal (NES) sequences in proteins to be transported, as well as with RanGTP [, ]. Importin-beta is a nuclear import receptor that translocates proteins into the nucleus; it interacts with RanGTP and importin-alpha, the latter binding with the nuclear localisation signal (NLS) sequences in proteins to be transported []. More information about these proteins can be found at Protein of the Month: Importins [].; PDB: 3IBV_A 3ICQ_U 3M1I_C 3NC1_A 3NBY_D 3NBZ_D 3NC0_A 3GJX_D 2XWU_B 2X19_B ....
Probab=24.12 E-value=1.7e+02 Score=25.09 Aligned_cols=71 Identities=20% Similarity=0.253 Sum_probs=46.3
Q ss_pred HHHHHHHHhhhhhccccchHHH--HHHHHHHHHHHHHhhcChhhHHHHHhCCChHHHHHhhcCCCCCccccCCCccchHH
Q 005044 55 LLSEVSAQVNVLNTTFSWLEAD--RAAAKRATHVLAELAKNEEVVNWIVEGGAVPALVKHLQAPPTSEADRNLKPFEHEV 132 (717)
Q Consensus 55 ~~~~i~~l~~~L~~~~~~~~~~--~~~~~~a~~~L~~l~~~~~~~~~~~~~g~i~~L~~lL~~~~~~~~~~~~~~~~~~v 132 (717)
.....+.+++.+...+...... ......++.++......- ....+...+.++.+.++|..+ .+
T Consensus 76 l~~~~~~i~~~l~~~l~~~~~~~~~~~~~~~L~~l~s~i~~~-~~~~i~~~~~l~~~~~~l~~~--------------~~ 140 (148)
T PF08389_consen 76 LRSNSPDILEILSQILSQSSSEANEELVKAALKCLKSWISWI-PIELIINSNLLNLIFQLLQSP--------------EL 140 (148)
T ss_dssp HHHHHHHHHHHHHHHHHHHCHCCHHHHHHHHHHHHHHHTTTS--HHHHHSSSHHHHHHHHTTSC--------------CC
T ss_pred HHHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHhC-CHHHhccHHHHHHHHHHcCCH--------------HH
Confidence 4445666677776665543321 456788899998887722 123456677899999999543 45
Q ss_pred HhHHHHHH
Q 005044 133 EKGSAFAL 140 (717)
Q Consensus 133 ~~~a~~~L 140 (717)
+..|+.+|
T Consensus 141 ~~~A~~cl 148 (148)
T PF08389_consen 141 REAAAECL 148 (148)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHhC
Confidence 77777765
No 405
>PF12054 DUF3535: Domain of unknown function (DUF3535); InterPro: IPR022707 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is typically between 439 to 459 amino acids in length. This domain is found associated with PF00271 from PFAM, PF02985 from PFAM, and PF00176 from PFAM. This domain has two completely conserved residues (P and K) that may be functionally important.
Probab=23.93 E-value=9e+02 Score=25.80 Aligned_cols=78 Identities=21% Similarity=0.209 Sum_probs=46.0
Q ss_pred hHHHHHHHHHHHHHhcCChhh-HHHHHhcCChHHHHHHhcCCCHHHHHHHHHHHHHhhcCCCCchhhH-hcCChHHHHHh
Q 005044 305 SESQREAALLLGQFAATDSDC-KVHIVQRGAVRPLIEMLQSPDVQLREMSAFALGRLAQDMHNQAGIA-HNGGLVPLLKL 382 (717)
Q Consensus 305 ~~~~~~a~~~L~~l~~~~~~~-~~~l~~~~~l~~L~~~l~~~~~~v~~~a~~~L~~l~~~~~~~~~l~-~~~~l~~L~~l 382 (717)
...|..++.+|+.+++.-+.. ...+. -+.|+.+|.+....-|..++-++...+........-. -....+.|...
T Consensus 101 ~r~Ri~aA~ALG~l~~~~~~~~~~~~~----~~~L~~~L~S~sa~qR~~aalvl~ewa~~~~~~~~~~~~~~l~~~L~~~ 176 (441)
T PF12054_consen 101 IRARIAAAKALGLLLSYWPESSLQEIF----QPLLLPYLNSPSATQRLLAALVLEEWAKACKERNPSPPPQALSPRLLEI 176 (441)
T ss_pred HHHHHHHHHHHHHHHHhcccchHHHHH----HHHHHHHhcchhHHHHHHHHHHHHHHHHhCccccCCccHHHHHHHHHHH
Confidence 346777888888887543221 11111 1268889998888888888889999886543321111 11233445566
Q ss_pred hcCC
Q 005044 383 LDSK 386 (717)
Q Consensus 383 l~~~ 386 (717)
|...
T Consensus 177 L~~~ 180 (441)
T PF12054_consen 177 LENP 180 (441)
T ss_pred HcCC
Confidence 6533
No 406
>PF07571 DUF1546: Protein of unknown function (DUF1546); InterPro: IPR011442 These proteins are associated with IPR004823 from INTERPRO in transcription initiation factor TFIID subunit 6 (TAF6).; GO: 0051090 regulation of sequence-specific DNA binding transcription factor activity, 0005634 nucleus
Probab=23.75 E-value=1.4e+02 Score=23.51 Aligned_cols=59 Identities=12% Similarity=-0.021 Sum_probs=36.0
Q ss_pred cchHHHhHHHHHHHHhcCChhhHHHHHhCCChHHHHHHHhccccCCCccchhHHHHHHHHHHHHH
Q 005044 128 FEHEVEKGSAFALGLLAVKPEHQQLIVDNGALSHLVNLLKRHMDSNCSRAVNSVIRRAADAITNL 192 (717)
Q Consensus 128 ~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~i~~L~~lL~~~~~~~~~~~~~~~~~~a~~~L~~l 192 (717)
.+..+|+.|+..|..++..-.....-.+..++..+.+.+.+...+ .....-|+..|..+
T Consensus 18 ~h~~LRd~AA~lL~~I~~~~~~~~~~L~~Ri~~tl~k~l~d~~~~------~~t~YGAi~gL~~l 76 (92)
T PF07571_consen 18 NHWALRDFAASLLAQICRKFSSSYPTLQPRITRTLLKALLDPKKP------LGTHYGAIVGLSAL 76 (92)
T ss_pred chHHHHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHcCCCCC------HHHHHHHHHHHHHH
Confidence 355999999999999992211111112223456666666655442 16677777877777
No 407
>PF14666 RICTOR_M: Rapamycin-insensitive companion of mTOR, middle domain
Probab=23.73 E-value=6.4e+02 Score=23.97 Aligned_cols=163 Identities=13% Similarity=0.075 Sum_probs=94.1
Q ss_pred CCChHHHHHhhcCCCCCccccCC-CccchHHHhHHHHHHHHhcCChhhHHHHHhCCChHHHHHHHhccccC---CCcc--
Q 005044 103 GGAVPALVKHLQAPPTSEADRNL-KPFEHEVEKGSAFALGLLAVKPEHQQLIVDNGALSHLVNLLKRHMDS---NCSR-- 176 (717)
Q Consensus 103 ~g~i~~L~~lL~~~~~~~~~~~~-~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~i~~L~~lL~~~~~~---~~~~-- 176 (717)
...+..|+...+.....-+.-.. ....+.....++..+..|...++....+...+.++.+.+.|...++. ....
T Consensus 50 ~kF~kRLl~FyrP~~~rfs~~~~~~~~~~~y~~vGc~L~~~Ll~~~eG~~~l~~~~ll~qia~~L~~~d~~~g~~~~~~l 129 (226)
T PF14666_consen 50 TKFFKRLLSFYRPFKYRFSNLDLNTKNNQKYVRVGCQLLETLLSSPEGIKYLSESKLLPQIAECLAQVDPMSGITAHDPL 129 (226)
T ss_pred ChHHHHHHHhcCCccccccccccccccchHHHHHHHHHHHHHHcCcHHHHHHHHccHHHHHHHHHHHHhhhcCCcccccc
Confidence 33455666665533322111100 11124566678888888887778777777899999999998876221 1100
Q ss_pred -chh----HHHHHHHHHHHHHhhcCchhhhHHHhcCCcHHHHHhhcCCCH-HHHHHHHHHHHHhhccChhhHHHHHhcCC
Q 005044 177 -AVN----SVIRRAADAITNLAHENSSIKTRVRMEGGIPPLVELLEFTDT-KVQRAAAGALRTLAFKNDENKNQIVECNA 250 (717)
Q Consensus 177 -~~~----~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~-~v~~~a~~~L~~L~~~~~~~~~~~~~~g~ 250 (717)
... .+...-...++.++. ++.....+-+.++...+..+...++. .+.. ..+.+|=...+...+
T Consensus 130 fs~~~l~~tl~~~Yf~~IG~lS~-~~~Gl~lLe~~~if~~l~~i~~~~~~~~l~k---lil~~LDY~~~~~~R------- 198 (226)
T PF14666_consen 130 FSPQRLSTTLSRGYFLFIGVLSS-TPNGLKLLERWNIFTMLYHIFSLSSRDDLLK---LILSSLDYSVDGHPR------- 198 (226)
T ss_pred cCHHHHHhhHHHHHHHHHHHHhC-ChhHHHHHHHCCHHHHHHHHHccCchHHHHH---HHHhhCCCCCccHHH-------
Confidence 011 222333456677776 44444566677888888888866532 2222 244444322222211
Q ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHhh
Q 005044 251 LPTLILMLRSEDSAIHYEAVGVIGNLV 277 (717)
Q Consensus 251 i~~L~~ll~~~~~~v~~~a~~~L~~l~ 277 (717)
..|-+.|.+++..+|..|...|+.+.
T Consensus 199 -~iLsKaLt~~s~~iRl~aT~~L~~ll 224 (226)
T PF14666_consen 199 -IILSKALTSGSESIRLYATKHLRVLL 224 (226)
T ss_pred -HHHHHHHhcCCHHHHHHHHHHHHHHh
Confidence 23446888899999999999998775
No 408
>PF12783 Sec7_N: Guanine nucleotide exchange factor in Golgi transport N-terminal
Probab=23.19 E-value=3.9e+02 Score=23.78 Aligned_cols=74 Identities=18% Similarity=0.183 Sum_probs=47.2
Q ss_pred HHhcCCHHHHHHHHcCCCHHHHHHHHHHHHHhhcCChHHHHHHH-H-cCChHHHHH-hhccCC--hHHHHHHHHHHHHHh
Q 005044 245 IVECNALPTLILMLRSEDSAIHYEAVGVIGNLVHSSPNIKKEVL-A-AGALQPVIG-LLSSCC--SESQREAALLLGQFA 319 (717)
Q Consensus 245 ~~~~g~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~-~-~g~l~~L~~-ll~~~~--~~~~~~a~~~L~~l~ 319 (717)
+++..+.+.+++.+.++++.+...+++++..+... .+..+. + +-.+..++. ++.++. ...+..++.++..++
T Consensus 69 ~lk~~l~~~Ll~~~~~~~~~i~~~slri~~~l~~~---~~~~Lk~ele~~l~~i~~~il~~~~~~~~~k~~~Le~l~~l~ 145 (168)
T PF12783_consen 69 LLKDDLCPALLKNLSSSDFPIFSRSLRIFLTLLSR---FRSHLKLELEVFLSHIILRILESDNSSLWQKELALEILRELC 145 (168)
T ss_pred HHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHccCCCcHHHHHHHHHHHHHHH
Confidence 34455677788888777788889999999998633 222222 1 123444444 555443 356677888999988
Q ss_pred cC
Q 005044 320 AT 321 (717)
Q Consensus 320 ~~ 321 (717)
..
T Consensus 146 ~~ 147 (168)
T PF12783_consen 146 KD 147 (168)
T ss_pred hC
Confidence 54
No 409
>PF12463 DUF3689: Protein of unknown function (DUF3689) ; InterPro: IPR022162 This family of proteins is found in eukaryotes. Proteins in this family are typically between 399 and 797 amino acids in length.
Probab=22.73 E-value=7.8e+02 Score=24.62 Aligned_cols=134 Identities=10% Similarity=0.161 Sum_probs=86.0
Q ss_pred HHHHHhCCChHHHHHHHhccc-----cC----------CCccchhHHHHHHHHHHHHHhhcCchhh--------------
Q 005044 150 QQLIVDNGALSHLVNLLKRHM-----DS----------NCSRAVNSVIRRAADAITNLAHENSSIK-------------- 200 (717)
Q Consensus 150 ~~~~~~~~~i~~L~~lL~~~~-----~~----------~~~~~~~~~~~~a~~~L~~l~~~~~~~~-------------- 200 (717)
+..+.+.|.+|.|-++.+.-. .+ .+..|...++..-++.+.++|..+....
T Consensus 2 q~~l~~~~li~~L~~~fd~l~W~~~~~~~~~~~~~~~~cdcsp~~~lKiQfLRlvh~f~D~~~~~~~~~~~~~~~~~~~~ 81 (303)
T PF12463_consen 2 QTRLAELGLIPTLNDMFDKLIWRKSSPDENVFHIHGPNCDCSPDTILKIQFLRLVHSFCDHDSNNSAIISELLIPSVESE 81 (303)
T ss_pred hHHHHHcCCHhHHHHHHHhccCCCCCCCccccccCCCCCccchhHHHHHHHHHHHHHHhccccchhHHHHHhcCcccccc
Confidence 456778888888888775411 00 0012233577788899999997432211
Q ss_pred -------hHHHhcCCcHHHHHhhcC--CCHHHHHHHHHHHHHhhccChh--hHHHHHhcCCHHHHHHHHcCC---CHHHH
Q 005044 201 -------TRVRMEGGIPPLVELLEF--TDTKVQRAAAGALRTLAFKNDE--NKNQIVECNALPTLILMLRSE---DSAIH 266 (717)
Q Consensus 201 -------~~~~~~~~i~~L~~ll~~--~~~~v~~~a~~~L~~L~~~~~~--~~~~~~~~g~i~~L~~ll~~~---~~~v~ 266 (717)
..-...|.+..++..+.. .+...+-.-+.++-....+.+. .+..+.+.|+++.++.-+-++ +.++.
T Consensus 82 ~~~~~~~~~~~~~gLl~kIi~~l~~e~~~s~~RfwLa~cVESfLRg~t~~~~Q~fl~~~GLLe~lv~eil~~~~~~~~v~ 161 (303)
T PF12463_consen 82 LNSNKLAECKEKKGLLSKIIHVLKKEPIDSSYRFWLARCVESFLRGATSYADQAFLAERGLLEHLVSEILSDGCMSQEVL 161 (303)
T ss_pred ccccccccccccccHHHHHHHHHHhCCCchhHHHHHHHHHHHHHcCCCcHHHHHHHHhcchHHHHHHHHhcCccchHHHH
Confidence 011123556666666643 3456677777777777765444 344577899999999866544 34788
Q ss_pred HHHHHHHHHhhcCChHH
Q 005044 267 YEAVGVIGNLVHSSPNI 283 (717)
Q Consensus 267 ~~a~~~L~~l~~~~~~~ 283 (717)
+...-.|+.+...+...
T Consensus 162 Q~~FDLLGELiK~n~~~ 178 (303)
T PF12463_consen 162 QSNFDLLGELIKFNRDA 178 (303)
T ss_pred HHHHHHHHHHHCCCHHH
Confidence 99999999998887654
No 410
>PF14663 RasGEF_N_2: Rapamycin-insensitive companion of mTOR RasGEF_N domain
Probab=22.69 E-value=1.4e+02 Score=24.75 Aligned_cols=39 Identities=28% Similarity=0.192 Sum_probs=31.2
Q ss_pred CcHHHHHhhcCCCHHHHHHHHHHHHHhhccChhhHHHHHh
Q 005044 208 GIPPLVELLEFTDTKVQRAAAGALRTLAFKNDENKNQIVE 247 (717)
Q Consensus 208 ~i~~L~~ll~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~ 247 (717)
+++.|+.-|.+++++|...|..+|...+.+. ...+.++.
T Consensus 9 ~i~lLv~QL~D~~~~V~~~A~~iL~e~c~~~-~~le~~v~ 47 (115)
T PF14663_consen 9 GIELLVTQLYDPSPEVVAAALEILEEACEDK-EYLEYLVS 47 (115)
T ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHHHhch-hhHHHHHH
Confidence 5788999999999999999999999999743 44444443
No 411
>PF07571 DUF1546: Protein of unknown function (DUF1546); InterPro: IPR011442 These proteins are associated with IPR004823 from INTERPRO in transcription initiation factor TFIID subunit 6 (TAF6).; GO: 0051090 regulation of sequence-specific DNA binding transcription factor activity, 0005634 nucleus
Probab=22.09 E-value=2.2e+02 Score=22.46 Aligned_cols=57 Identities=19% Similarity=0.124 Sum_probs=39.5
Q ss_pred CCHHHHHHHHHHHHHhhcCCCCchhhHhcCChHHHHHhhcCC--ChhHHHHHHHHHHhc
Q 005044 345 PDVQLREMSAFALGRLAQDMHNQAGIAHNGGLVPLLKLLDSK--NGSLQHNAAFALYGL 401 (717)
Q Consensus 345 ~~~~v~~~a~~~L~~l~~~~~~~~~l~~~~~l~~L~~ll~~~--~~~v~~~a~~~L~~l 401 (717)
++..+|..|+..|..+++.......-.+......+.+.+.+. +.....-|+..|..|
T Consensus 18 ~h~~LRd~AA~lL~~I~~~~~~~~~~L~~Ri~~tl~k~l~d~~~~~~t~YGAi~gL~~l 76 (92)
T PF07571_consen 18 NHWALRDFAASLLAQICRKFSSSYPTLQPRITRTLLKALLDPKKPLGTHYGAIVGLSAL 76 (92)
T ss_pred chHHHHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHH
Confidence 467899999999999997544444444455666777777643 445666777777766
No 412
>KOG4390 consensus Voltage-gated A-type K+ channel KCND [Inorganic ion transport and metabolism]
Probab=21.70 E-value=5.1e+02 Score=26.33 Aligned_cols=101 Identities=20% Similarity=0.213 Sum_probs=61.8
Q ss_pred EEEEEcCeEeehhHHHHhhccHHHHHhhcCCCCC----CCCcceEcCCCCHHHHHHHHHHHhcCccccchhhHHHHH--H
Q 005044 552 VTFLVEGRRFYAHRICLLASSDAFRAMFDGGYRE----KDARDIEIPNIRWEVFELMMRFIYTGSVDVTLDIAQDLL--R 625 (717)
Q Consensus 552 v~~~~~~~~~~~h~~il~~~s~~f~~~~~~~~~e----~~~~~i~l~~~~~~~~~~~l~~~Yt~~~~~~~~~~~~ll--~ 625 (717)
+++.+.|..|..+|.-|-. |=+.++.+.-+| ...+. ..-|-+|+.|+.+|.|--||++.-+......-+ +
T Consensus 42 lvlNvSGrRFeTWknTLer---yPdTLLGSsEkeFFy~~dt~e-YFFDRDPdiFRhvLnFYRTGkLHyPR~ECi~AyDeE 117 (632)
T KOG4390|consen 42 LVLNVSGRRFETWKNTLER---YPDTLLGSSEKEFFYDEDTGE-YFFDRDPDIFRHVLNFYRTGKLHYPRHECISAYDEE 117 (632)
T ss_pred EEEeccccchhHHHhHHHh---CchhhhCCcchheeecCCccc-ccccCChHHHHHHHHHhhcCcccCchHHHHHHhhhh
Confidence 5667789999999988874 334444433221 11122 223569999999999999999987665543322 3
Q ss_pred HHHhhChHhHHHHHHHHHHhcCChhcHHHHH
Q 005044 626 AADQYLLEGLKRLCEYTIAQDISLENVSSMY 656 (717)
Q Consensus 626 ~A~~~~~~~l~~~c~~~l~~~i~~~n~~~~~ 656 (717)
+|-+=.+|+|+.-|...=-+.-..+|+..+.
T Consensus 118 LaF~Gl~PeligDCCyEeYkDrkrENaERL~ 148 (632)
T KOG4390|consen 118 LAFYGLVPELIGDCCYEEYKDRKRENAERLQ 148 (632)
T ss_pred hhHhcccHHHHhhhhhHHHhhhhhhhHHHhh
Confidence 4444447999988853322223345555544
No 413
>cd03572 ENTH_epsin_related ENTH domain, Epsin Related family; composed of hypothetical proteins containing an ENTH-like domain. The epsin N-terminal homology (ENTH) domain is an evolutionarily conserved protein module found primarily in proteins that participate in clathrin-mediated endocytosis. A set of proteins previously designated as harboring an ENTH domain in fact contains a highly similar, yet unique module referred to as an AP180 N-terminal homology (ANTH) domain. ENTH and ANTH (E/ANTH) domains are structurally similar to the VHS domain and are composed of a superhelix of eight alpha helices. E/ANTH domains bind both inositol phospholipids and proteins and contribute to the nucleation and formation of clathrin coats on membranes. ENTH domains also function in the development of membrane curvature through lipid remodeling during the formation of clathrin-coated vesicles. E/ANTH-bearing proteins have recently been shown to function with adaptor protein-1 and GGA adaptors at the t
Probab=21.61 E-value=4.9e+02 Score=21.89 Aligned_cols=39 Identities=15% Similarity=0.171 Sum_probs=30.9
Q ss_pred hHHHHHhhcCCCCCccccCCCccchHHHhHHHHHHHHhc--CChhhHHHHHhC
Q 005044 106 VPALVKHLQAPPTSEADRNLKPFEHEVEKGSAFALGLLA--VKPEHQQLIVDN 156 (717)
Q Consensus 106 i~~L~~lL~~~~~~~~~~~~~~~~~~v~~~a~~~L~~l~--~~~~~~~~~~~~ 156 (717)
+..|.+=|++.+. .|+..++++|-.++ +++.++..+...
T Consensus 40 ~d~L~kRL~~~~~------------hVK~K~Lrilk~l~~~G~~~f~~~~~~~ 80 (122)
T cd03572 40 LEYLLKRLKRSSP------------HVKLKVLKIIKHLCEKGNSDFKRELQRN 80 (122)
T ss_pred HHHHHHHhcCCCC------------cchHHHHHHHHHHHhhCCHHHHHHHHHh
Confidence 5777787887665 89999999999999 666777666654
No 414
>PF08713 DNA_alkylation: DNA alkylation repair enzyme; InterPro: IPR014825 These proteins are predicted to be DNA alkylation repair enzymes. The structure of a hypothetical protein shows it to adopt a super coiled alpha helical structure. ; PDB: 3JY1_A 3JXY_A 3JX7_A 3JXZ_A 3BVS_A 2B6C_B 1T06_B 3L9T_A.
Probab=21.38 E-value=6.6e+02 Score=23.24 Aligned_cols=140 Identities=15% Similarity=0.079 Sum_probs=83.7
Q ss_pred HHHHHhhcCCCCCccccCCCccchHHHhHHHHHHHHhc--CChhhHHHHHhCCChHHHHHHHhccccCCCccchhHHHHH
Q 005044 107 PALVKHLQAPPTSEADRNLKPFEHEVEKGSAFALGLLA--VKPEHQQLIVDNGALSHLVNLLKRHMDSNCSRAVNSVIRR 184 (717)
Q Consensus 107 ~~L~~lL~~~~~~~~~~~~~~~~~~v~~~a~~~L~~l~--~~~~~~~~~~~~~~i~~L~~lL~~~~~~~~~~~~~~~~~~ 184 (717)
..+..++.++.. +.+..|+.++.... .++. .++.+-..+...++ |.+...
T Consensus 54 ~l~~~L~~~~~~------------E~~~la~~il~~~~~~~~~~---------~~~~~~~~~~~~~~-------W~~~D~ 105 (213)
T PF08713_consen 54 ELADELWESGYR------------EERYLALLILDKRRKKLTEE---------DLELLEKWLPDIDN-------WATCDS 105 (213)
T ss_dssp HHHHHHHCSSCH------------HHHHHHHHHHHHCGGG--HH---------HHHHHHHCCCCCCC-------HHHHHH
T ss_pred HHHHHHcCCchH------------HHHHHHHHHhHHHhhhhhHH---------HHHHHHHHhccCCc-------chhhhH
Confidence 344556666554 77777877776544 1111 23445555553332 355554
Q ss_pred H-HHHHHHHhhcCchhhhHHHhcCCcHHHHHhhcCCCHHHHHHHHHHHHHhhccChhhHHHHHhcCCHHHHHHHHcCCCH
Q 005044 185 A-ADAITNLAHENSSIKTRVRMEGGIPPLVELLEFTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSEDS 263 (717)
Q Consensus 185 a-~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~g~i~~L~~ll~~~~~ 263 (717)
. ..++..+.... ....+.+...+.++++-+++.++..+...... .... .++..+...+.+++.
T Consensus 106 ~~~~~~~~~~~~~---------~~~~~~~~~W~~s~~~w~rR~~~v~~~~~~~~--~~~~-----~~l~~~~~~~~d~~~ 169 (213)
T PF08713_consen 106 LCSKLLGPLLKKH---------PEALELLEKWAKSDNEWVRRAAIVMLLRYIRK--EDFD-----ELLEIIEALLKDEEY 169 (213)
T ss_dssp HTHHHHHHHHHHH---------GGHHHHHHHHHHCSSHHHHHHHHHCTTTHGGG--CHHH-----HHHHHHHHCTTGS-H
T ss_pred HHHHHHHHHHHhh---------HHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHh--cCHH-----HHHHHHHHHcCCchH
Confidence 4 34444443321 22456778888999999999988777666642 1111 123445556678889
Q ss_pred HHHHHHHHHHHHhhcCChHHHHHHHHc
Q 005044 264 AIHYEAVGVIGNLVHSSPNIKKEVLAA 290 (717)
Q Consensus 264 ~v~~~a~~~L~~l~~~~~~~~~~~~~~ 290 (717)
-|+....|+|..++..+++.....+..
T Consensus 170 ~vq~ai~w~L~~~~~~~~~~v~~~l~~ 196 (213)
T PF08713_consen 170 YVQKAIGWALREIGKKDPDEVLEFLQK 196 (213)
T ss_dssp HHHHHHHHHHHHHCTT-HHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhCHHHHHHHHHH
Confidence 999999999999998887765555443
No 415
>PF08389 Xpo1: Exportin 1-like protein; InterPro: IPR013598 The exchange of macromolecules between the nucleus and cytoplasm takes place through nuclear pore complexes within the nuclear membrane. Active transport of large molecules through these pore complexes require carrier proteins, called karyopherins (importins and exportins), which shuttle between the two compartments. This domain is found close to the N terminus of yeast exportin 1 (Xpo1, Crm1, P14068 from SWISSPROT), as well as adjacent to the N-terminal domain of importin-beta (IPR001494 from INTERPRO). Exportin 1 is a nuclear export receptor that translocates proteins out of the nucleus; it interacts with leucine-rich nuclear export signal (NES) sequences in proteins to be transported, as well as with RanGTP [, ]. Importin-beta is a nuclear import receptor that translocates proteins into the nucleus; it interacts with RanGTP and importin-alpha, the latter binding with the nuclear localisation signal (NLS) sequences in proteins to be transported []. More information about these proteins can be found at Protein of the Month: Importins [].; PDB: 3IBV_A 3ICQ_U 3M1I_C 3NC1_A 3NBY_D 3NBZ_D 3NC0_A 3GJX_D 2XWU_B 2X19_B ....
Probab=21.32 E-value=2.7e+02 Score=23.84 Aligned_cols=64 Identities=19% Similarity=0.196 Sum_probs=44.6
Q ss_pred hchHHHHHHHHhhcc----hhHHHHHHHHHHhccCCCCCceeeecCCCHHHHHHHhcCCCchhhhhhHHHH
Q 005044 447 GRVLNHLLYLMRVAE----KGVQRRVALALAHLCSPDDQRTIFIDGGGLELLLGLLGSTNPKQQLDGAVAL 513 (717)
Q Consensus 447 ~~~~~~L~~ll~~~~----~~v~~~a~~aL~~l~~~~~~~~~~~~~~~l~~L~~ll~~~~~~v~~~a~~~l 513 (717)
..++..+.+.+.... .++...++.++.......+... +...+.++.+.+++ .++..+..|+.+|
T Consensus 81 ~~i~~~l~~~l~~~~~~~~~~~~~~~L~~l~s~i~~~~~~~-i~~~~~l~~~~~~l--~~~~~~~~A~~cl 148 (148)
T PF08389_consen 81 PDILEILSQILSQSSSEANEELVKAALKCLKSWISWIPIEL-IINSNLLNLIFQLL--QSPELREAAAECL 148 (148)
T ss_dssp HHHHHHHHHHHHHHCHCCHHHHHHHHHHHHHHHTTTS-HHH-HHSSSHHHHHHHHT--TSCCCHHHHHHHH
T ss_pred HHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHhCCHHH-hccHHHHHHHHHHc--CCHHHHHHHHHhC
Confidence 345666666666543 7888899999999988655333 33566889999999 4455688887765
No 416
>PF07923 N1221: N1221-like protein; InterPro: IPR012486 The sequences featured in this family are similar to a hypothetical protein product of ORF N1221 in the CPT1-SPC98 intergenic region of the yeast genome (P53917 from SWISSPROT). This encodes an acidic polypeptide with several possible transmembrane regions [].
Probab=21.02 E-value=1.4e+02 Score=29.76 Aligned_cols=54 Identities=28% Similarity=0.310 Sum_probs=40.4
Q ss_pred cCCcHHHHHhhcCCCHHHHHHHHHHHHHhhccCh--------------hhHHHHHhcCCHHHHHHHHc
Q 005044 206 EGGIPPLVELLEFTDTKVQRAAAGALRTLAFKND--------------ENKNQIVECNALPTLILMLR 259 (717)
Q Consensus 206 ~~~i~~L~~ll~~~~~~v~~~a~~~L~~L~~~~~--------------~~~~~~~~~g~i~~L~~ll~ 259 (717)
...+..++.-|.+++...|..|+.+|..++.+.- .|...+.+.|+++.++.+|+
T Consensus 59 ~~~i~~ll~~L~~~~~~~R~~al~~LlYi~~G~~~~~~s~~~ql~~i~~N~~lL~~~g~~~~l~~~L~ 126 (293)
T PF07923_consen 59 KDFIEKLLDQLESSDSEDRLEALRALLYIAQGTWGETASEEEQLQWIRRNVFLLYECGGFPALWELLK 126 (293)
T ss_pred HHHHHHHHHhccccchhhHHHHHHHHHHHHcCCccccCCHHHHHHHHHHHHHHHHHhhhhHHHHHHHH
Confidence 3456788888888899999999999999987532 23334556677777777775
No 417
>PF04499 SAPS: SIT4 phosphatase-associated protein; InterPro: IPR007587 The SAPS family consists of proteins that associate with the SIT4 phosphatase protein []. This association is required for SIT4's role in G1 cyclin transcription and for bud formation in yeast.
Probab=20.56 E-value=5.3e+02 Score=27.82 Aligned_cols=39 Identities=28% Similarity=0.320 Sum_probs=30.4
Q ss_pred hhhhHHHhcCCcHHHHHhhcC-CCHHHHHHHHHHHHHhhc
Q 005044 198 SIKTRVRMEGGIPPLVELLEF-TDTKVQRAAAGALRTLAF 236 (717)
Q Consensus 198 ~~~~~~~~~~~i~~L~~ll~~-~~~~v~~~a~~~L~~L~~ 236 (717)
....++.+.+.++.|+.+|.. .++.++..|+.+|..+..
T Consensus 53 ~ilewL~~q~LI~~Li~~L~p~~~~~~q~naa~~L~aII~ 92 (475)
T PF04499_consen 53 GILEWLAEQNLIPRLIDLLSPSYSSDVQSNAADFLKAIIR 92 (475)
T ss_pred HHHHHHHHhCHHHHHHHHhCCCCCHHHHHHHHHHHHHHHH
Confidence 344566678899999999963 568899999988887754
Done!