Query 005044
Match_columns 717
No_of_seqs 581 out of 4047
Neff 10.6
Searched_HMMs 29240
Date Mon Mar 25 13:41:07 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/005044.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/005044hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3tpo_A Importin subunit alpha- 100.0 1.9E-37 6.6E-42 337.6 31.2 402 59-518 78-497 (529)
2 3ul1_B Importin subunit alpha- 100.0 4.5E-37 1.5E-41 332.6 30.5 403 59-519 59-479 (510)
3 4b8j_A Importin subunit alpha- 100.0 1.8E-36 6.1E-41 331.7 31.6 405 57-520 74-498 (528)
4 1wa5_B Importin alpha subunit; 100.0 2.6E-35 8.9E-40 322.3 35.9 404 58-520 88-512 (530)
5 3now_A UNC-45 protein, SD10334 100.0 2.4E-36 8.3E-41 331.7 27.3 417 80-519 264-738 (810)
6 3now_A UNC-45 protein, SD10334 100.0 1.6E-35 5.5E-40 325.2 29.3 416 57-520 290-784 (810)
7 3ul1_B Importin subunit alpha- 100.0 1.4E-34 4.7E-39 313.1 32.7 371 58-477 101-478 (510)
8 3nmz_A APC variant protein; pr 100.0 5.4E-35 1.8E-39 304.5 27.6 365 82-480 48-453 (458)
9 1jdh_A Beta-catenin; beta-cate 100.0 1.7E-34 5.9E-39 316.9 32.8 432 57-517 59-529 (529)
10 3tpo_A Importin subunit alpha- 100.0 3.2E-34 1.1E-38 312.2 33.9 368 57-477 119-497 (529)
11 3l6x_A Catenin delta-1; cateni 100.0 1.2E-34 4.1E-39 308.0 27.8 364 101-520 45-478 (584)
12 2z6h_A Catenin beta-1, beta-ca 100.0 1.6E-33 5.4E-38 314.9 37.4 437 58-520 15-529 (644)
13 3l6x_A Catenin delta-1; cateni 100.0 6.7E-34 2.3E-38 302.3 29.1 372 58-490 49-489 (584)
14 1xm9_A Plakophilin 1; armadill 100.0 7.7E-34 2.6E-38 302.2 29.1 359 105-520 3-451 (457)
15 2z6g_A B-catenin; FULL-length, 100.0 6.3E-34 2.2E-38 322.4 29.8 434 58-520 193-665 (780)
16 3nmz_A APC variant protein; pr 100.0 3E-34 1E-38 298.8 23.0 367 105-520 33-452 (458)
17 1jdh_A Beta-catenin; beta-cate 100.0 2.4E-33 8.1E-38 307.8 31.3 434 56-519 16-490 (529)
18 2jdq_A Importin alpha-1 subuni 100.0 2.8E-33 9.7E-38 300.6 28.4 401 59-519 22-444 (450)
19 1xm9_A Plakophilin 1; armadill 100.0 1E-32 3.5E-37 293.5 27.9 361 59-482 4-454 (457)
20 4b8j_A Importin subunit alpha- 100.0 1.9E-31 6.6E-36 291.8 34.0 362 77-479 132-498 (528)
21 1wa5_B Importin alpha subunit; 100.0 4.1E-31 1.4E-35 289.0 34.6 364 76-480 144-513 (530)
22 2z6g_A B-catenin; FULL-length, 100.0 1.9E-31 6.4E-36 302.2 32.9 435 56-519 149-623 (780)
23 2jdq_A Importin alpha-1 subuni 100.0 1.1E-30 3.6E-35 280.5 33.9 377 57-479 64-445 (450)
24 2z6h_A Catenin beta-1, beta-ca 100.0 6.7E-31 2.3E-35 293.7 27.9 393 100-515 10-420 (644)
25 3nmw_A APC variant protein; AR 100.0 7.3E-30 2.5E-34 258.4 25.8 282 125-407 42-338 (354)
26 3nmw_A APC variant protein; AR 100.0 4.2E-29 1.4E-33 252.8 24.3 279 80-367 49-339 (354)
27 3hve_A Gigaxonin; ubiquitin, c 100.0 3.5E-28 1.2E-32 237.2 16.6 160 541-700 23-184 (256)
28 3htm_A Speckle-type POZ protei 100.0 9.4E-28 3.2E-32 219.4 15.9 147 541-687 26-172 (172)
29 3i3n_A Kelch-like protein 11; 99.9 7.9E-28 2.7E-32 237.7 13.9 159 541-699 24-191 (279)
30 4hxt_A De novo protein OR329; 99.9 2E-25 7E-30 219.0 26.1 243 104-366 2-245 (252)
31 4hxt_A De novo protein OR329; 99.9 7.3E-25 2.5E-29 215.1 24.1 242 157-406 2-244 (252)
32 4db8_A Armadillo-repeat protei 99.9 1.5E-24 5.3E-29 212.6 23.8 239 104-362 12-251 (252)
33 4db8_A Armadillo-repeat protei 99.9 2.4E-24 8.1E-29 211.3 24.1 239 157-403 12-251 (252)
34 3hqi_A Speckle-type POZ protei 99.9 8.5E-25 2.9E-29 220.2 17.2 147 541-687 166-312 (312)
35 3opb_A SWI5-dependent HO expre 99.9 9.7E-24 3.3E-28 226.8 19.4 384 80-519 273-729 (778)
36 4eoz_A Speckle-type POZ protei 99.9 7.2E-25 2.5E-29 193.9 7.4 129 541-669 17-145 (145)
37 3opb_A SWI5-dependent HO expre 99.9 4E-22 1.4E-26 214.3 29.7 382 80-519 229-684 (778)
38 4db6_A Armadillo repeat protei 99.9 5E-22 1.7E-26 188.7 22.3 199 205-403 10-209 (210)
39 4db6_A Armadillo repeat protei 99.9 1.4E-21 4.7E-26 185.6 23.1 200 155-362 10-209 (210)
40 2vkp_A BTB/POZ domain-containi 99.9 3.2E-22 1.1E-26 166.8 11.1 104 543-647 2-109 (109)
41 1xqr_A HSPBP1 protein; armadil 99.9 2.9E-20 1E-24 182.8 24.8 209 56-283 27-243 (296)
42 2if5_A Zinc finger and BTB dom 99.9 9.6E-22 3.3E-26 166.9 12.0 103 541-643 17-119 (120)
43 1r29_A B-cell lymphoma 6 prote 99.9 2.3E-21 7.8E-26 166.3 12.6 105 541-646 21-126 (127)
44 1xqr_A HSPBP1 protein; armadil 99.8 5.1E-20 1.7E-24 181.1 21.2 224 131-362 55-287 (296)
45 2z8h_A Transcription regulator 99.8 1.9E-21 6.4E-26 169.1 9.6 109 541-651 28-137 (138)
46 3b84_A Zinc finger and BTB dom 99.8 2.8E-21 9.6E-26 163.2 9.1 101 541-645 16-116 (119)
47 2ppi_A Gigaxonin; BTB domain, 99.8 3.2E-21 1.1E-25 168.4 9.1 103 541-643 39-143 (144)
48 1buo_A POZ domain, protein (pr 99.8 1.3E-20 4.5E-25 159.8 11.8 102 541-647 20-121 (121)
49 2yy9_A Zinc finger and BTB dom 99.8 4.1E-21 1.4E-25 166.0 8.3 105 541-649 17-121 (135)
50 2vpk_A Myoneurin; transcriptio 99.8 1.4E-20 4.8E-25 158.5 11.1 100 541-644 14-115 (116)
51 3tt9_A Plakophilin-2; cell adh 99.8 1.6E-19 5.5E-24 169.2 16.6 194 208-403 9-229 (233)
52 3tt9_A Plakophilin-2; cell adh 99.8 2.4E-19 8.2E-24 168.0 17.7 196 250-478 9-230 (233)
53 2q81_A MIZ-1 protein; BTB/POZ 99.8 3.2E-20 1.1E-24 156.7 9.1 99 541-644 19-117 (119)
54 3ohu_A Transcription regulator 99.8 8.1E-21 2.8E-25 162.3 4.3 101 541-643 24-125 (125)
55 2ihc_A Transcription regulator 99.8 1.3E-20 4.3E-25 160.5 4.7 102 541-644 21-123 (124)
56 3ga1_A Nucleus accumbens-assoc 99.8 2.6E-20 8.8E-25 160.0 6.4 102 541-646 25-127 (129)
57 3m5b_A Zinc finger and BTB dom 99.8 3.8E-19 1.3E-23 149.0 7.1 94 543-645 24-117 (119)
58 3fkc_A Transcriptional regulat 99.8 1.8E-18 6.1E-23 144.8 10.3 92 541-637 23-115 (116)
59 1b3u_A Protein (protein phosph 99.7 1.9E-16 6.6E-21 175.7 23.4 401 76-517 177-586 (588)
60 3grl_A General vesicular trans 99.7 7.8E-15 2.7E-19 153.7 30.3 336 52-413 16-405 (651)
61 1b3u_A Protein (protein phosph 99.7 2.2E-16 7.5E-21 175.2 19.0 398 79-519 142-549 (588)
62 3grl_A General vesicular trans 99.7 5.4E-14 1.8E-18 147.4 30.5 414 55-514 58-546 (651)
63 4fdd_A Transportin-1; heat rep 99.7 5.4E-16 1.9E-20 179.3 16.7 376 76-520 61-473 (852)
64 4fdd_A Transportin-1; heat rep 99.6 4.1E-15 1.4E-19 172.0 20.1 430 62-520 175-701 (852)
65 1ibr_B P95, importin beta-1 su 99.6 1.6E-13 5.6E-18 147.0 23.6 379 76-520 14-439 (462)
66 1oyz_A Hypothetical protein YI 99.6 3.8E-13 1.3E-17 133.4 24.3 257 154-514 20-278 (280)
67 1oyz_A Hypothetical protein YI 99.6 5.9E-13 2E-17 132.0 24.1 229 205-518 21-250 (280)
68 2vgl_B AP-2 complex subunit be 99.5 4.2E-13 1.4E-17 147.5 21.2 366 63-519 88-458 (591)
69 2vgl_B AP-2 complex subunit be 99.5 2.2E-12 7.6E-17 141.7 23.5 354 77-519 63-420 (591)
70 1qgr_A Protein (importin beta 99.5 3.2E-13 1.1E-17 157.2 17.3 433 60-519 171-680 (876)
71 2bpt_A Importin beta-1 subunit 99.5 1.4E-12 4.7E-17 151.6 21.8 416 76-519 194-669 (861)
72 2bpt_A Importin beta-1 subunit 99.5 6.4E-13 2.2E-17 154.4 18.0 429 59-518 367-857 (861)
73 1qgr_A Protein (importin beta 99.4 8.8E-12 3E-16 145.1 24.3 385 76-520 50-481 (876)
74 3ltm_A Alpha-REP4; protein eng 99.4 5E-12 1.7E-16 119.4 17.2 188 248-520 18-205 (211)
75 1ibr_B P95, importin beta-1 su 99.4 4.8E-12 1.6E-16 135.6 19.1 342 76-478 50-438 (462)
76 3ltm_A Alpha-REP4; protein eng 99.4 1.4E-11 4.8E-16 116.3 19.6 189 206-480 18-206 (211)
77 1w63_A Adapter-related protein 99.4 2E-11 6.9E-16 134.5 23.3 273 76-403 120-414 (618)
78 1w63_A Adapter-related protein 99.4 2.7E-10 9.3E-15 125.5 32.1 344 80-519 87-452 (618)
79 2ast_A S-phase kinase-associat 99.4 1.9E-12 6.6E-17 114.1 11.5 103 552-655 3-134 (159)
80 3ltj_A Alpharep-4; protein eng 99.4 3.2E-11 1.1E-15 112.8 20.1 184 207-476 14-197 (201)
81 3ltj_A Alpharep-4; protein eng 99.4 1.5E-11 5.1E-16 115.1 16.6 185 249-518 14-198 (201)
82 1u6g_C TIP120 protein, CAND1; 99.3 2.7E-10 9.1E-15 137.1 23.4 411 76-518 19-506 (1230)
83 1u6g_C TIP120 protein, CAND1; 99.2 4.7E-10 1.6E-14 135.0 19.5 399 59-519 131-599 (1230)
84 4ajy_C Transcription elongatio 99.1 2.4E-10 8.3E-15 91.0 8.1 79 552-631 4-96 (97)
85 2vgl_A Adaptor protein complex 99.1 4.3E-08 1.5E-12 107.5 28.2 353 79-519 90-471 (621)
86 2vgl_A Adaptor protein complex 99.0 1.4E-07 4.7E-12 103.5 28.8 332 104-519 74-434 (621)
87 1fs1_B SKP1, cyclin A/CDK2-ass 99.0 1.9E-09 6.4E-14 92.4 8.9 100 552-656 4-130 (141)
88 4gmo_A Putative uncharacterize 98.9 5.5E-09 1.9E-13 116.3 14.0 188 77-277 48-257 (684)
89 4gmo_A Putative uncharacterize 98.9 1.7E-08 5.8E-13 112.3 14.7 194 106-319 36-257 (684)
90 2p1m_A SKP1-like protein 1A; F 98.8 3.1E-09 1E-13 93.4 3.8 105 552-660 6-141 (160)
91 2db0_A 253AA long hypothetical 98.7 5.6E-06 1.9E-10 70.9 22.1 215 103-362 31-246 (253)
92 4ady_A RPN2, 26S proteasome re 98.7 8.2E-06 2.8E-10 90.5 29.2 299 130-514 409-715 (963)
93 3tjz_B Coatomer subunit gamma; 98.7 5.4E-07 1.9E-11 89.6 17.5 278 159-515 70-350 (355)
94 3b2a_A TON_1937, putative unch 98.6 8.4E-07 2.9E-11 79.6 14.5 189 249-480 33-221 (265)
95 1ho8_A Vacuolar ATP synthase s 98.6 5E-06 1.7E-10 84.4 22.1 346 157-521 77-479 (480)
96 3b2a_A TON_1937, putative unch 98.6 4.8E-06 1.6E-10 74.8 18.6 189 158-366 34-222 (265)
97 4ady_A RPN2, 26S proteasome re 98.6 5.9E-06 2E-10 91.6 23.5 290 131-519 373-677 (963)
98 2qk2_A LP04448P; mini spindles 98.6 1.1E-07 3.6E-12 91.5 8.7 187 293-519 17-206 (242)
99 2eqx_A Kelch repeat and BTB do 98.5 5.9E-08 2E-12 78.6 4.5 58 644-701 5-62 (105)
100 2db0_A 253AA long hypothetical 98.5 2.1E-05 7.2E-10 67.4 19.9 182 207-407 32-214 (253)
101 3tjz_B Coatomer subunit gamma; 98.5 5.2E-06 1.8E-10 82.6 18.8 246 208-519 69-317 (355)
102 2qk2_A LP04448P; mini spindles 98.5 1.6E-06 5.4E-11 83.2 13.3 174 179-362 29-205 (242)
103 2qk1_A Protein STU2; STU2P, XM 98.4 4.5E-07 1.5E-11 86.8 7.7 193 295-519 20-221 (249)
104 1te4_A Conserved protein MTH18 98.4 5.7E-08 1.9E-12 83.2 1.0 122 331-516 10-131 (131)
105 1hv2_A Elongin C, ELC1; protei 98.4 1.2E-06 4E-11 69.5 8.4 79 552-632 6-99 (99)
106 2fnj_C Transcription elongatio 98.3 1.2E-06 4.1E-11 69.1 6.7 80 552-632 3-96 (96)
107 1te4_A Conserved protein MTH18 98.3 1.4E-07 4.7E-12 80.7 1.5 121 206-360 11-131 (131)
108 1ho8_A Vacuolar ATP synthase s 98.3 0.00024 8.2E-09 72.2 23.9 315 60-402 80-475 (480)
109 3v7d_A Suppressor of kinetocho 98.2 7.8E-06 2.7E-10 72.0 10.3 97 551-648 8-134 (169)
110 2qk1_A Protein STU2; STU2P, XM 98.2 1.6E-05 5.4E-10 76.1 13.2 183 179-362 30-220 (249)
111 3drz_A BTB/POZ domain-containi 98.2 8E-06 2.7E-10 65.9 9.4 95 550-645 6-106 (107)
112 1wa5_C Importin alpha RE-expor 98.1 0.00012 3.9E-09 85.5 20.7 379 76-519 50-526 (960)
113 1wa5_C Importin alpha RE-expor 98.0 0.0014 4.8E-08 76.3 28.5 382 77-519 99-583 (960)
114 3dad_A FH1/FH2 domain-containi 97.8 0.00063 2.2E-08 65.6 16.9 154 211-365 122-289 (339)
115 3dad_A FH1/FH2 domain-containi 97.8 0.00076 2.6E-08 65.1 17.3 184 160-352 121-326 (339)
116 1vcb_B Protein (elongin C); tu 97.8 4E-05 1.4E-09 62.0 7.0 80 552-632 19-112 (112)
117 2iw3_A Elongation factor 3A; a 97.8 0.0042 1.5E-07 70.0 25.3 246 81-362 70-324 (986)
118 2iw3_A Elongation factor 3A; a 97.6 0.0071 2.4E-07 68.2 23.4 286 183-519 32-325 (986)
119 2x1g_F Cadmus; transport prote 97.3 0.015 5.1E-07 67.9 23.0 381 77-519 99-573 (971)
120 3ibv_A Exportin-T; karyopherin 97.2 0.033 1.1E-06 64.3 23.3 258 76-361 56-360 (980)
121 1lrv_A LRV, leucine-rich repea 97.2 0.00013 4.3E-09 68.7 2.6 164 210-512 77-240 (244)
122 2x1g_F Cadmus; transport prote 97.1 0.046 1.6E-06 63.7 24.1 218 130-362 478-722 (971)
123 2fv2_A RCD1 required for cell 97.1 0.043 1.5E-06 50.4 18.1 177 80-276 73-266 (268)
124 4hat_C Exportin-1; heat repeat 97.1 0.046 1.6E-06 63.2 23.2 316 56-403 189-569 (1023)
125 2x19_B Importin-13; nuclear tr 97.1 0.075 2.6E-06 61.9 25.5 339 129-519 462-847 (963)
126 2x19_B Importin-13; nuclear tr 97.0 0.015 5E-07 67.9 18.7 330 131-519 217-600 (963)
127 4ffb_C Protein STU2; tubulin f 97.0 0.013 4.3E-07 57.0 15.2 189 209-404 12-213 (278)
128 2of3_A ZYG-9; multifunctional 96.9 0.039 1.3E-06 52.1 16.8 178 210-403 49-236 (266)
129 3drx_A BTB/POZ domain-containi 96.9 0.0014 4.7E-08 58.4 6.4 95 550-645 12-112 (202)
130 1lrv_A LRV, leucine-rich repea 96.9 0.00071 2.4E-08 63.6 4.9 116 211-398 126-241 (244)
131 1upk_A MO25 protein; transfera 96.9 0.041 1.4E-06 53.0 16.9 206 202-410 73-290 (341)
132 3oc3_A Helicase MOT1, MOT1; re 96.9 0.0015 5.3E-08 66.6 6.9 236 131-399 189-432 (800)
133 3oc3_A Helicase MOT1, MOT1; re 96.8 0.0085 2.9E-07 61.3 11.6 238 208-513 175-431 (800)
134 2of3_A ZYG-9; multifunctional 96.7 0.015 5.1E-07 54.9 12.1 178 294-519 49-237 (266)
135 3m1i_C Exportin-1; heat repeat 96.7 0.12 4.1E-06 60.6 22.6 335 131-519 210-619 (1049)
136 1upk_A MO25 protein; transfera 96.6 0.15 5.3E-06 49.1 18.6 205 153-366 74-287 (341)
137 3ibv_A Exportin-T; karyopherin 96.5 0.05 1.7E-06 62.7 17.2 302 131-478 208-567 (980)
138 3m1i_C Exportin-1; heat repeat 96.4 0.34 1.2E-05 56.8 23.9 190 208-403 345-569 (1049)
139 4ffb_C Protein STU2; tubulin f 96.4 0.076 2.6E-06 51.4 15.3 180 178-363 22-213 (278)
140 3l9t_A Putative uncharacterize 96.2 0.056 1.9E-06 49.4 12.2 143 251-413 73-218 (240)
141 4hat_C Exportin-1; heat repeat 96.1 0.04 1.4E-06 63.6 13.6 140 178-322 466-620 (1023)
142 2fv2_A RCD1 required for cell 95.7 0.24 8.1E-06 45.6 14.0 173 181-360 72-266 (268)
143 3l9t_A Putative uncharacterize 95.4 0.25 8.5E-06 45.1 12.9 132 131-289 86-218 (240)
144 3a6p_A Exportin-5; exportin-5, 94.9 2.1 7.1E-05 50.7 22.8 258 76-364 60-382 (1204)
145 3gjx_A Exportin-1; transport, 94.9 7.3 0.00025 45.0 27.6 104 386-522 491-599 (1073)
146 3gjx_A Exportin-1; transport, 94.6 3 0.0001 48.2 22.0 322 56-403 201-595 (1073)
147 1s1g_A Potassium voltage-gated 94.6 0.067 2.3E-06 43.9 6.2 83 550-636 13-100 (124)
148 3kvt_A Potassium channel prote 94.4 0.024 8.1E-07 45.9 3.1 85 551-636 6-93 (115)
149 3ebb_A Phospholipase A2-activa 94.3 1.2 4.1E-05 43.1 15.4 167 131-302 117-287 (304)
150 3u0r_A Apoptosis inhibitor 5; 93.8 2.8 9.5E-05 42.6 17.1 164 218-401 39-204 (507)
151 3ebb_A Phospholipase A2-activa 93.7 1.2 4E-05 43.2 14.1 133 219-352 160-296 (304)
152 3c2g_A SYS-1 protein; beta-cat 93.3 0.82 2.8E-05 43.8 11.6 128 189-318 266-401 (619)
153 2nz0_B Potassium voltage-gated 93.2 0.11 3.9E-06 43.5 5.2 84 548-635 33-121 (140)
154 1nn7_A Potassium channel KV4.2 93.0 0.049 1.7E-06 43.3 2.6 80 552-635 2-86 (105)
155 2f31_A Diaphanous protein homo 92.8 3.1 0.00011 38.5 15.1 163 147-310 34-218 (233)
156 1lsh_A Lipovitellin (LV-1N, LV 92.6 6.9 0.00023 45.5 20.9 170 209-407 393-580 (1056)
157 3c2g_A SYS-1 protein; beta-cat 92.5 3 0.0001 40.0 14.1 135 132-276 259-401 (619)
158 1lsh_A Lipovitellin (LV-1N, LV 92.1 8.8 0.0003 44.6 20.9 126 212-366 445-580 (1056)
159 3eg5_B Protein diaphanous homo 91.5 0.9 3.1E-05 45.8 10.3 159 324-506 101-282 (383)
160 2f31_A Diaphanous protein homo 91.4 0.8 2.7E-05 42.6 9.3 139 346-507 67-217 (233)
161 1t1d_A Protein (potassium chan 91.1 0.1 3.5E-06 40.9 2.3 84 552-636 3-90 (100)
162 3eg5_B Protein diaphanous homo 90.9 4.8 0.00017 40.4 15.0 161 147-309 100-283 (383)
163 3u0r_A Apoptosis inhibitor 5; 90.7 5.5 0.00019 40.5 14.8 118 180-317 43-160 (507)
164 2bnx_A Diaphanous protein homo 89.5 5.3 0.00018 40.2 14.0 155 156-310 46-222 (386)
165 2bnx_A Diaphanous protein homo 86.9 3.3 0.00011 41.7 10.5 140 346-508 71-222 (386)
166 3qml_C Protein SLS1, nucleotid 85.4 17 0.00057 34.6 13.5 164 55-235 20-188 (315)
167 3qml_C Protein SLS1, nucleotid 84.3 11 0.00037 35.8 11.7 135 262-402 41-188 (315)
168 3a6p_A Exportin-5; exportin-5, 81.3 22 0.00074 42.1 15.8 223 261-519 25-277 (1204)
169 2vkp_A BTB/POZ domain-containi 79.2 2.2 7.7E-05 33.8 4.7 32 647-678 77-108 (109)
170 2eqx_A Kelch repeat and BTB do 77.8 2.8 9.5E-05 33.1 4.7 36 612-647 5-40 (105)
171 3gs3_A Symplekin, LD45768P; he 73.8 58 0.002 30.3 20.0 196 55-283 10-248 (257)
172 3o2t_A Symplekin; heat repeat, 69.9 91 0.0031 31.0 16.7 86 181-276 41-127 (386)
173 1r29_A B-cell lymphoma 6 prote 66.7 5.5 0.00019 32.6 4.2 32 647-678 95-126 (127)
174 2yy9_A Zinc finger and BTB dom 64.8 2.9 0.0001 34.8 2.1 38 647-684 87-124 (135)
175 3o2t_A Symplekin; heat repeat, 62.8 54 0.0018 32.6 11.0 128 265-402 41-182 (386)
176 1x5b_A Signal transducing adap 62.6 60 0.0021 27.7 10.1 70 208-277 53-124 (163)
177 2q81_A MIZ-1 protein; BTB/POZ 60.5 8.8 0.0003 30.9 4.3 30 647-676 88-117 (119)
178 2vpk_A Myoneurin; transcriptio 60.1 7.3 0.00025 31.2 3.7 30 647-676 86-115 (116)
179 1buo_A POZ domain, protein (pr 59.9 11 0.00038 30.3 4.8 32 647-678 89-120 (121)
180 3b84_A Zinc finger and BTB dom 59.7 5.2 0.00018 32.3 2.7 32 647-678 86-117 (119)
181 1juq_A ADP-ribosylation factor 57.9 78 0.0027 27.3 10.0 70 208-277 51-127 (171)
182 3gs3_A Symplekin, LD45768P; he 57.7 1.2E+02 0.0041 28.1 14.7 129 264-402 30-172 (257)
183 1mhq_A ADP-ribosylation factor 57.7 84 0.0029 26.3 10.1 70 208-277 39-115 (148)
184 3htm_A Speckle-type POZ protei 57.1 9.6 0.00033 33.0 4.2 34 615-648 132-165 (172)
185 2if5_A Zinc finger and BTB dom 55.3 13 0.00046 29.7 4.5 29 647-675 91-119 (120)
186 2z8h_A Transcription regulator 54.1 3.8 0.00013 34.2 0.9 33 647-679 101-133 (138)
187 2ast_A S-phase kinase-associat 52.0 24 0.00083 30.1 5.8 64 615-680 49-127 (159)
188 1mhq_A ADP-ribosylation factor 51.2 33 0.0011 28.8 6.4 71 293-363 40-117 (148)
189 1x5b_A Signal transducing adap 50.5 31 0.0011 29.5 6.2 70 293-362 54-125 (163)
190 3s4w_B Protein FACD2, fanconi 49.2 3.9E+02 0.013 31.5 17.5 131 262-403 323-467 (1323)
191 1fs1_B SKP1, cyclin A/CDK2-ass 48.2 65 0.0022 26.7 7.7 81 599-681 25-123 (141)
192 2r9r_B Paddle chimera voltage 45.0 19 0.00065 37.8 4.7 83 550-636 52-141 (514)
193 3ldz_A STAM-1, signal transduc 44.4 50 0.0017 27.4 6.3 70 293-362 44-114 (140)
194 2ppi_A Gigaxonin; BTB domain, 43.0 12 0.00042 31.3 2.5 29 647-675 115-143 (144)
195 3ldz_A STAM-1, signal transduc 42.8 36 0.0012 28.2 5.3 70 208-277 43-113 (140)
196 3g2s_A C-terminal fragment of 41.7 94 0.0032 26.0 7.7 71 293-363 50-127 (149)
197 1juq_A ADP-ribosylation factor 41.4 55 0.0019 28.2 6.4 71 293-363 52-129 (171)
198 4eoz_A Speckle-type POZ protei 41.0 13 0.00045 30.9 2.4 33 647-679 91-123 (145)
199 3zyq_A Hepatocyte growth facto 38.9 1.8E+02 0.0061 26.3 9.8 70 208-277 46-117 (226)
200 3m5b_A Zinc finger and BTB dom 38.8 22 0.00075 28.5 3.2 31 647-677 87-117 (119)
201 3hqi_A Speckle-type POZ protei 38.0 25 0.00087 33.9 4.2 33 615-647 272-304 (312)
202 3g2s_A C-terminal fragment of 37.5 86 0.0029 26.3 6.8 70 208-277 49-125 (149)
203 2plx_B Peptide inhibitor; heli 36.1 27 0.00092 18.1 2.0 21 654-674 3-23 (26)
204 3pst_A Protein DOA1; protein d 33.2 91 0.0031 31.3 7.2 131 184-325 245-394 (425)
205 3gae_A Protein DOA1; UFD3, CDC 33.0 57 0.0019 30.3 5.5 103 260-365 101-220 (253)
206 3ga1_A Nucleus accumbens-assoc 32.1 7.9 0.00027 31.7 -0.5 32 647-678 96-127 (129)
207 3i3n_A Kelch-like protein 11; 29.9 69 0.0024 30.2 5.7 64 614-678 138-216 (279)
208 1vsy_5 Proteasome activator BL 29.8 1.2E+02 0.0043 34.6 8.6 217 293-519 135-366 (997)
209 1dvp_A HRS, hepatocyte growth 29.6 3E+02 0.01 24.6 9.7 70 208-277 43-114 (220)
210 1elk_A Target of MYB1; superhe 29.5 2.5E+02 0.0086 23.5 10.4 70 208-277 54-129 (157)
211 4atg_A TAF6; transcription, TF 29.5 1.2E+02 0.0041 26.7 6.6 129 138-276 27-160 (196)
212 3hve_A Gigaxonin; ubiquitin, c 28.6 48 0.0017 30.8 4.3 32 647-678 99-130 (256)
213 2b6c_A Hypothetical protein EF 28.0 3.3E+02 0.011 24.3 13.1 128 131-289 70-199 (220)
214 3gae_A Protein DOA1; UFD3, CDC 27.9 54 0.0018 30.5 4.3 106 130-238 104-219 (253)
215 2xpp_A IWS1, ECU08_0440; trans 27.6 2E+02 0.0067 23.9 7.1 78 281-362 51-136 (145)
216 3l3f_X Protein DOA1, DOA1/UFD3 26.9 1.1E+02 0.0037 30.0 6.4 130 184-324 182-330 (362)
217 1vsy_5 Proteasome activator BL 26.9 1.1E+02 0.0039 34.9 7.6 180 208-400 134-362 (997)
218 3zyq_A Hepatocyte growth facto 26.1 81 0.0028 28.7 5.1 70 293-362 47-118 (226)
219 3pst_A Protein DOA1; protein d 23.8 1.2E+02 0.0042 30.4 6.2 104 130-236 276-389 (425)
220 1elk_A Target of MYB1; superhe 23.6 1.6E+02 0.0053 24.9 6.1 70 293-362 55-130 (157)
221 1dvp_A HRS, hepatocyte growth 23.4 1E+02 0.0034 27.9 5.2 70 293-362 44-115 (220)
222 3nfq_A Transcription factor IW 21.7 3.2E+02 0.011 23.3 7.5 78 281-362 66-151 (170)
223 1zx4_A P1 PARB, plasmid partit 20.8 3.9E+02 0.013 23.3 8.2 105 595-709 35-184 (192)
224 3l3f_X Protein DOA1, DOA1/UFD3 20.5 1.1E+02 0.0039 29.9 5.1 104 130-236 213-326 (362)
No 1
>3tpo_A Importin subunit alpha-2; nuclear import, protein transport; 2.10A {Mus musculus} PDB: 1qgk_B 1qgr_B
Probab=100.00 E-value=1.9e-37 Score=337.62 Aligned_cols=402 Identities=18% Similarity=0.283 Sum_probs=345.3
Q ss_pred HHHHhhhhhccccchHHHHHHHHHHHHHHHHhhc--ChhhHHHHHhCCChHHHHHhhcCCCCCccccCCCccchHHHhHH
Q 005044 59 VSAQVNVLNTTFSWLEADRAAAKRATHVLAELAK--NEEVVNWIVEGGAVPALVKHLQAPPTSEADRNLKPFEHEVEKGS 136 (717)
Q Consensus 59 i~~l~~~L~~~~~~~~~~~~~~~~a~~~L~~l~~--~~~~~~~~~~~g~i~~L~~lL~~~~~~~~~~~~~~~~~~v~~~a 136 (717)
++.+++.+.+. +...+..|+..++.+.+ .......+++.|++|.|+++|..++. +.++..|
T Consensus 78 l~~lv~~l~s~------d~~~q~~a~~~~rklLs~~~~~~i~~ii~~G~ip~Lv~lL~~~~~-----------~~~q~~A 140 (529)
T 3tpo_A 78 VEDIVKGINSN------NLESQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGKTDC-----------SPIQFES 140 (529)
T ss_dssp HHHHHHHHTSS------CHHHHHHHHHHHHHHHTSSSCCCHHHHHHTTHHHHHHHHHTCTTC-----------HHHHHHH
T ss_pred HHHHHHHhcCC------CHHHHHHHHHHHHHHHcCCCCchHHHHHHCCCHHHHHHHHcCCCC-----------HHHHHHH
Confidence 55566655543 45568999999998755 33446778999999999999976553 3899999
Q ss_pred HHHHHHhc-CChhhHHHHHhCCChHHHHHHHhccccCCCccchhHHHHHHHHHHHHHhhcCchhhhHHHhcCCcHHHHHh
Q 005044 137 AFALGLLA-VKPEHQQLIVDNGALSHLVNLLKRHMDSNCSRAVNSVIRRAADAITNLAHENSSIKTRVRMEGGIPPLVEL 215 (717)
Q Consensus 137 ~~~L~~l~-~~~~~~~~~~~~~~i~~L~~lL~~~~~~~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~l 215 (717)
+++|+|++ .+++.+..+++.|+++.|+.+|.+.+. ++++.|+++|+|++.+++..+..+...|+++.|+.+
T Consensus 141 a~aL~nia~~~~~~~~~vv~~Gaip~Lv~LL~s~~~--------~v~e~A~~aL~nLa~~~~~~r~~i~~~g~i~~Ll~l 212 (529)
T 3tpo_A 141 AWALTNIASGTSEQTKAVVDGGAIPAFISLLASPHA--------HISEQAVWALGNIAGAGSAFRDLVIKHGAIDPLLAL 212 (529)
T ss_dssp HHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTCSCH--------HHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHT
T ss_pred HHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHcCCCH--------HHHHHHHHHHHHHhccCHHHHHHHHHcCCcHHHHHH
Confidence 99999999 788888999999999999999998776 999999999999999899999999999999999999
Q ss_pred hcCCC-----HHHHHHHHHHHHHhhccChhhHHHHHhcCCHHHHHHHHcCCCHHHHHHHHHHHHHhhcCChHHHHHHHHc
Q 005044 216 LEFTD-----TKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSEDSAIHYEAVGVIGNLVHSSPNIKKEVLAA 290 (717)
Q Consensus 216 l~~~~-----~~v~~~a~~~L~~L~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~ 290 (717)
+..++ ..+...++++|.+++.+...........|++|.|++++.+++++++..++|+|.+++.........+...
T Consensus 213 L~~~~~~~~~~~~~~~a~~~L~nl~~~~~~~~~~~~~~~~lp~L~~LL~~~~~~v~~~a~~aL~~l~~~~~~~~~~v~~~ 292 (529)
T 3tpo_A 213 LAVPDLSTLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTLVRLLHHNDPEVLADSCWAISYLTDGPNERIEMVVKK 292 (529)
T ss_dssp TCSSCGGGSCHHHHHHHHHHHHHHHCCCTTCCCHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHSSCHHHHHHHHTT
T ss_pred HhccchhHhHHHHHHHHHHHHHHHHhcccchhhHHHHhhHHHHHHHHhcCCcHHHHHHHHHHHHHhhhhhhhhHHHHHhc
Confidence 97643 4678899999999998655544444556789999999999999999999999999998888888888999
Q ss_pred CChHHHHHhhccCChHHHHHHHHHHHHHhcCChhhHHHHHhcCChHHHHHHhcCCCHHHHHHHHHHHHHhhcCCCC-chh
Q 005044 291 GALQPVIGLLSSCCSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQSPDVQLREMSAFALGRLAQDMHN-QAG 369 (717)
Q Consensus 291 g~l~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~l~~~~~l~~L~~~l~~~~~~v~~~a~~~L~~l~~~~~~-~~~ 369 (717)
|+++.|+.++.+++..++..++.+|+|++.+++.....+.+.|+++.|+.++.++++.++..|+|+|+||+.+... ...
T Consensus 293 g~i~~Lv~lL~~~~~~v~~~a~~aL~nl~~~~~~~~~~i~~~g~l~~L~~LL~~~~~~i~~~a~~aL~nl~~~~~~~~~~ 372 (529)
T 3tpo_A 293 GVVPQLVKLLGATELPIVTPALRAIGNIVTGTDEQTQKVIDAGALAVFPSLLTNPKTNIQKEATWTMSNITAGRQDQIQQ 372 (529)
T ss_dssp TCHHHHHHHHTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTGGGGHHHHTTCSSHHHHHHHHHHHHHHHTSCHHHHHH
T ss_pred cchHHHHHHhcCCChhHHHHHHHHHHHHHccchHHHHHHhhcccHHHHHHHHcCCCHHHHHHHHHHHHHHhcccHHHHHH
Confidence 9999999999999999999999999999988888888999999999999999999999999999999999986554 456
Q ss_pred hHhcCChHHHHHhhcCCChhHHHHHHHHHHhccC--CCcchHHHHHhcCccccccchhHHhhhHHHHHHHHHHHHHHhhh
Q 005044 370 IAHNGGLVPLLKLLDSKNGSLQHNAAFALYGLAD--NEDNVADFIRVGGVQKLQDGEFIVQATKDCVAKTLKRLEEKIHG 447 (717)
Q Consensus 370 l~~~~~l~~L~~ll~~~~~~v~~~a~~~L~~l~~--~~~~~~~l~~~~~i~~L~~~~~~~~~~~~~~~~~~~~l~~~~~~ 447 (717)
+.+.|+++.|+.++.+++..++..|+|+|.|++. ..+....+.+.|
T Consensus 373 v~~~g~i~~Lv~lL~~~~~~v~~~A~~aL~nl~~~~~~~~~~~l~~~g-------------------------------- 420 (529)
T 3tpo_A 373 VVNHGLVPFLVGVLSKADFKTQKAAAWAITNYTSGGTVEQIVYLVHCG-------------------------------- 420 (529)
T ss_dssp HHHTTHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHSCHHHHHHHHHTT--------------------------------
T ss_pred HHhcCcHHHHHHHhcCCCHHHHHHHHHHHHHHHcCCCHHHHHHHHHCc--------------------------------
Confidence 7888999999999999999999999999999975 334444555554
Q ss_pred chHHHHHHHHhhcchhHHHHHHHHHHhccCC----CC---CceeeecCCCHHHHHHHhcCCCchhhhhhHHHHHHhhh
Q 005044 448 RVLNHLLYLMRVAEKGVQRRVALALAHLCSP----DD---QRTIFIDGGGLELLLGLLGSTNPKQQLDGAVALFKLAN 518 (717)
Q Consensus 448 ~~~~~L~~ll~~~~~~v~~~a~~aL~~l~~~----~~---~~~~~~~~~~l~~L~~ll~~~~~~v~~~a~~~l~~L~~ 518 (717)
+++.|+.+|.+++++++..++.+|.|+... .. .+..+.+.||+..|..|..+++.++...|...|.+...
T Consensus 421 -~i~~L~~LL~~~d~~i~~~~L~aL~nil~~~~~~~~~~~~~~~iee~ggl~~ie~Lq~~~n~~i~~~A~~iie~yf~ 497 (529)
T 3tpo_A 421 -IIEPLMNLLSAKDTKIIQVILDAISNIFQAAEKLGETEKLSIMIEECGGLDKIEALQRHENESVYKASLNLIEKYFS 497 (529)
T ss_dssp -CHHHHHHGGGCSCHHHHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHTTCHHHHTGGGGCSSHHHHHHHHHHHHHHC-
T ss_pred -CHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhHhccChHHHHHHHHHCCcHHHHHHHHcCCCHHHHHHHHHHHHHHCC
Confidence 677799999999999999999999998531 11 33456788999999999999999999999988876654
No 2
>3ul1_B Importin subunit alpha-2; arm repeat, armadillo repeat, nuclear transport, nuclear LOC signal binding, importin beta binding; 1.90A {Mus musculus} PDB: 3ukx_B 3uky_B 3ukz_B 3ukw_B 3ul0_B 3oqs_A 3rz9_A 3rzx_A 3uvu_A 1q1s_C 1q1t_C 3knd_A 1ejy_I 1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C ...
Probab=100.00 E-value=4.5e-37 Score=332.58 Aligned_cols=403 Identities=18% Similarity=0.284 Sum_probs=346.2
Q ss_pred HHHHhhhhhccccchHHHHHHHHHHHHHHHHhhc--ChhhHHHHHhCCChHHHHHhhcCCCCCccccCCCccchHHHhHH
Q 005044 59 VSAQVNVLNTTFSWLEADRAAAKRATHVLAELAK--NEEVVNWIVEGGAVPALVKHLQAPPTSEADRNLKPFEHEVEKGS 136 (717)
Q Consensus 59 i~~l~~~L~~~~~~~~~~~~~~~~a~~~L~~l~~--~~~~~~~~~~~g~i~~L~~lL~~~~~~~~~~~~~~~~~~v~~~a 136 (717)
++.+++.+.+. |...+..|+..++.+.+ .......+++.|+||.|+++|+..+. +.++..|
T Consensus 59 i~~~v~~l~s~------d~~~q~~a~~~~rklls~e~~ppi~~ii~~G~ip~LV~lL~~~~~-----------~~lq~~A 121 (510)
T 3ul1_B 59 VEDIVKGINSN------NLESQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGKTDC-----------SPIQFES 121 (510)
T ss_dssp HHHHHHHHTSS------CHHHHHHHHHHHHHHHTCSSCCCHHHHHHTTHHHHHHHHTTCTTC-----------HHHHHHH
T ss_pred HHHHHHHhcCC------CHHHHHHHHHHHHHHhcCCCCchHHHHHHCCCHHHHHHHHCCCCC-----------HHHHHHH
Confidence 66777777654 55579999999998765 22345778999999999999986553 3899999
Q ss_pred HHHHHHhc-CChhhHHHHHhCCChHHHHHHHhccccCCCccchhHHHHHHHHHHHHHhhcCchhhhHHHhcCCcHHHHHh
Q 005044 137 AFALGLLA-VKPEHQQLIVDNGALSHLVNLLKRHMDSNCSRAVNSVIRRAADAITNLAHENSSIKTRVRMEGGIPPLVEL 215 (717)
Q Consensus 137 ~~~L~~l~-~~~~~~~~~~~~~~i~~L~~lL~~~~~~~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~l 215 (717)
+|+|+||+ .+++.+..+++.|+++.|+.+|++.+. ++++.|+++|+|++.+++..+..+...|+++.|+.+
T Consensus 122 a~aL~nias~~~e~~~~vv~~GaIp~Lv~lL~s~~~--------~v~e~A~~aL~nLa~d~~~~r~~v~~~G~i~~Ll~l 193 (510)
T 3ul1_B 122 AWALTNIASGTSEQTKAVVDGGAIPAFISLLASPHA--------HISEQAVWALGNIAGDGSAFRDLVIKHGAIDPLLAL 193 (510)
T ss_dssp HHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTCSCH--------HHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHhcCCHHHHHHHHHCCCHHHHHHHHcCCCH--------HHHHHHHHHHHHHHhCCHHHHHHHHHcCChHHHHHH
Confidence 99999998 889999999999999999999988765 999999999999999889999999999999999999
Q ss_pred hcCCC-----HHHHHHHHHHHHHhhccChhhHHHHHhcCCHHHHHHHHcCCCHHHHHHHHHHHHHhhcCChHHHHHHHHc
Q 005044 216 LEFTD-----TKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSEDSAIHYEAVGVIGNLVHSSPNIKKEVLAA 290 (717)
Q Consensus 216 l~~~~-----~~v~~~a~~~L~~L~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~ 290 (717)
+..++ ..+++.++++|.+++.+...........|+++.|++++.+++++++..++++|.+++..+.+....+...
T Consensus 194 L~~~~~~~~~~~~~~~a~~~L~nl~~~~~~~~~~~~~~~~lp~L~~LL~~~~~~v~~~A~~aL~~L~~~~~~~~~~i~~~ 273 (510)
T 3ul1_B 194 LAVPDLSTLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTLVRLLHHNDPEVLADSCWAISYLTDGPNERIEMVVKK 273 (510)
T ss_dssp TCSSCGGGSCHHHHHHHHHHHHHHHCCCSSCCCHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTSSCHHHHHHHHTT
T ss_pred HHhccchhhhHHHHHHHHHHHHHHhhcccchhHHHHHHhHHHHHHHHHhcCCHHHHHHHHHHHHHHhhchhhhHHHHHhc
Confidence 97654 4678899999999998554444444456789999999999999999999999999998888887888899
Q ss_pred CChHHHHHhhccCChHHHHHHHHHHHHHhcCChhhHHHHHhcCChHHHHHHhcCCCHHHHHHHHHHHHHhhcCCCC-chh
Q 005044 291 GALQPVIGLLSSCCSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQSPDVQLREMSAFALGRLAQDMHN-QAG 369 (717)
Q Consensus 291 g~l~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~l~~~~~l~~L~~~l~~~~~~v~~~a~~~L~~l~~~~~~-~~~ 369 (717)
|+++.|+.++.+.+..++..++.+|+|++..++.....+.+.|+++.|+.++.++++.++..|+|+|+||+.+... ...
T Consensus 274 g~i~~Lv~lL~~~~~~v~~~al~aL~nl~~~~~~~~~~i~~~g~l~~L~~LL~~~~~~v~~~A~~aL~nl~a~~~~~~~~ 353 (510)
T 3ul1_B 274 GVVPQLVKLLGATELPIVTPALRAIGNIVTGTDEQTQKVIDAGALAVFPSLLTNPKTNIQKEATWTMSNITAGRQDQIQQ 353 (510)
T ss_dssp TCHHHHHHHHTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTGGGGCC-CTTCSSHHHHHHHHHHHHHHTTSCHHHHHH
T ss_pred ccchhhhhhhcCCChhhhhHHHHHHHHhhcCCHHHHHHHhhccchHHHHHHhcCCCHHHHHHHHHHHHHHHcCcHHHHHH
Confidence 9999999999999999999999999999988888888999999999999999999999999999999999986554 456
Q ss_pred hHhcCChHHHHHhhcCCChhHHHHHHHHHHhccC--CCcchHHHHHhcCccccccchhHHhhhHHHHHHHHHHHHHHhhh
Q 005044 370 IAHNGGLVPLLKLLDSKNGSLQHNAAFALYGLAD--NEDNVADFIRVGGVQKLQDGEFIVQATKDCVAKTLKRLEEKIHG 447 (717)
Q Consensus 370 l~~~~~l~~L~~ll~~~~~~v~~~a~~~L~~l~~--~~~~~~~l~~~~~i~~L~~~~~~~~~~~~~~~~~~~~l~~~~~~ 447 (717)
+.+.|+++.|+.++.+++..++..|+++|.|++. ..+....+.+.|
T Consensus 354 v~~~g~i~~Lv~lL~~~~~~v~~~Aa~aL~Nl~~~~~~~~~~~L~~~g-------------------------------- 401 (510)
T 3ul1_B 354 VVNHGLVPFLVGVLSKADFKTQKEAAWAITNYTSGGTVEQIVYLVHCG-------------------------------- 401 (510)
T ss_dssp HHHTTHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCCHHHHHHHHHTT--------------------------------
T ss_pred HHhcCCHHHHHHHHcCCCHHHHHHHHHHHHHHHccCCHHHHHHHHHCC--------------------------------
Confidence 7888999999999999999999999999999975 334444455544
Q ss_pred chHHHHHHHHhhcchhHHHHHHHHHHhccCC----CC---CceeeecCCCHHHHHHHhcCCCchhhhhhHHHHHHhhhc
Q 005044 448 RVLNHLLYLMRVAEKGVQRRVALALAHLCSP----DD---QRTIFIDGGGLELLLGLLGSTNPKQQLDGAVALFKLANK 519 (717)
Q Consensus 448 ~~~~~L~~ll~~~~~~v~~~a~~aL~~l~~~----~~---~~~~~~~~~~l~~L~~ll~~~~~~v~~~a~~~l~~L~~~ 519 (717)
+++.|+.+|.+++++++..++.+|.|+... .. .+..+.+.||+..|..|..+++.++.+.|...|-+....
T Consensus 402 -~i~~L~~LL~~~d~~i~~~~L~aL~nil~~~~~~~~~~~~~~~iee~ggl~~ie~Lq~~~n~~i~~~A~~iie~yf~~ 479 (510)
T 3ul1_B 402 -IIEPLMNLLSAKDTKIIQVILDAISNIFQAAEKLGETEKLSIMIEECGGLDKIEALQRHENESVYKASLNLIEKYFSV 479 (510)
T ss_dssp -CHHHHHHGGGCSCHHHHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHTTHHHHHHHGGGCSSHHHHHHHHHHHHHHCC-
T ss_pred -CHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhHhccchHHHHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHHHCCC
Confidence 677899999999999999999999998531 11 334567889999999999999999999999988776643
No 3
>4b8j_A Importin subunit alpha-1A; transport protein, nuclear localization signal; 2.00A {Oryza sativa japonica group} PDB: 4b8o_A 2yns_A 4b8p_A
Probab=100.00 E-value=1.8e-36 Score=331.75 Aligned_cols=405 Identities=19% Similarity=0.254 Sum_probs=349.9
Q ss_pred HHHHHHhhhhhccccchHHHHHHHHHHHHHHHHhhc-Ch-hhHHHHHhCCChHHHHHhhcCCCCCccccCCCccchHHHh
Q 005044 57 SEVSAQVNVLNTTFSWLEADRAAAKRATHVLAELAK-NE-EVVNWIVEGGAVPALVKHLQAPPTSEADRNLKPFEHEVEK 134 (717)
Q Consensus 57 ~~i~~l~~~L~~~~~~~~~~~~~~~~a~~~L~~l~~-~~-~~~~~~~~~g~i~~L~~lL~~~~~~~~~~~~~~~~~~v~~ 134 (717)
..++.+++.|.+. +..++..|++.|.+++. .+ .....++..|++|.|+++|.+++. +.++.
T Consensus 74 ~~l~~lv~~L~s~------~~~~~~~A~~~L~~l~s~~~~~~~~~~~~~g~v~~Lv~lL~~~~~-----------~~v~~ 136 (528)
T 4b8j_A 74 ESLPAMIGGVYSD------DNNLQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVQFLTREDF-----------PQLQF 136 (528)
T ss_dssp -CHHHHHHHHTSS------CHHHHHHHHHHHHHHHTCSSSCCHHHHHHTTCHHHHHHHHTCTTC-----------HHHHH
T ss_pred HHHHHHHHHHcCC------CHHHHHHHHHHHHHHhcCCCCchHHHHHHCCCHHHHHHHhCCCCC-----------HHHHH
Confidence 3467777777543 45579999999999976 33 667788999999999999988652 29999
Q ss_pred HHHHHHHHhc-CChhhHHHHHhCCChHHHHHHHhccccCCCccchhHHHHHHHHHHHHHhhcCchhhhHHHhcCCcHHHH
Q 005044 135 GSAFALGLLA-VKPEHQQLIVDNGALSHLVNLLKRHMDSNCSRAVNSVIRRAADAITNLAHENSSIKTRVRMEGGIPPLV 213 (717)
Q Consensus 135 ~a~~~L~~l~-~~~~~~~~~~~~~~i~~L~~lL~~~~~~~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~ 213 (717)
.|+++|++++ .+++.+..+...|+++.|+.+|.+.+. .++..|+++|.+++..++..+..+...|+++.|+
T Consensus 137 ~A~~~L~~l~~~~~~~~~~~~~~g~i~~L~~lL~~~~~--------~v~~~a~~aL~~l~~~~~~~~~~i~~~g~l~~Ll 208 (528)
T 4b8j_A 137 EAAWALTNIASGTSENTKVVIDHGAVPIFVKLLGSSSD--------DVREQAVWALGNVAGDSPKCRDLVLANGALLPLL 208 (528)
T ss_dssp HHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTCSCH--------HHHHHHHHHHHHHHHTCHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHhCCCHHHHHHHHhCCcHHHHHHHhcCCCH--------HHHHHHHHHHHHHhCCChhhHHHHHHCCcHHHHH
Confidence 9999999999 679999999999999999999998655 8999999999999998888888999999999999
Q ss_pred Hhh-cCCCHHHHHHHHHHHHHhhccChhhHHHHHhcCCHHHHHHHHcCCCHHHHHHHHHHHHHhhcCChHHHHHHHHcCC
Q 005044 214 ELL-EFTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSEDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGA 292 (717)
Q Consensus 214 ~ll-~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~ 292 (717)
.++ .++++.++..++++|.+|+...+... .....|+++.|+.++.++++.++..++++|++++...+...+.++..|+
T Consensus 209 ~lL~~~~~~~v~~~a~~~L~~L~~~~~~~~-~~~~~~~l~~L~~lL~~~~~~v~~~a~~aL~~l~~~~~~~~~~~~~~g~ 287 (528)
T 4b8j_A 209 AQLNEHTKLSMLRNATWTLSNFCRGKPQPS-FEQTRPALPALARLIHSNDEEVLTDACWALSYLSDGTNDKIQAVIEAGV 287 (528)
T ss_dssp HTCCTTCCHHHHHHHHHHHHHHHCSSSCCC-HHHHTTHHHHHHHHTTCCCHHHHHHHHHHHHHHTSSCHHHHHHHHHTTC
T ss_pred HHHhcCCCHHHHHHHHHHHHHHHcCCCCCc-HHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHcCH
Confidence 999 67889999999999999998544333 3445789999999999999999999999999999887777788899999
Q ss_pred hHHHHHhhccCChHHHHHHHHHHHHHhcCChhhHHHHHhcCChHHHHHHhcCC-CHHHHHHHHHHHHHhhcCCCC-chhh
Q 005044 293 LQPVIGLLSSCCSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQSP-DVQLREMSAFALGRLAQDMHN-QAGI 370 (717)
Q Consensus 293 l~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~l~~~~~l~~L~~~l~~~-~~~v~~~a~~~L~~l~~~~~~-~~~l 370 (717)
++.|+.++.++++.++..|+++|++++.+++.....+.+.|+++.|+.+|.++ ++.++..|+|+|+||+.+... ...+
T Consensus 288 v~~Lv~lL~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~A~~~L~nl~~~~~~~~~~~ 367 (528)
T 4b8j_A 288 CPRLVELLLHPSPSVLIPALRTVGNIVTGDDAQTQCIIDHQALPCLLSLLTQNLKKSIKKEACWTISNITAGNKDQIQAV 367 (528)
T ss_dssp HHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHTTTHHHHHHHHHHSCCCHHHHHHHHHHHHHHHTSCHHHHHHH
T ss_pred HHHHHHHHcCCChhHHHHHHHHHHHHHcCCHHHHHHHHHhhhHHHHHHHHcCCCcHHHHHHHHHHHHHHHCCCHHHHHHH
Confidence 99999999999999999999999999988888888899999999999999998 999999999999999985433 4567
Q ss_pred HhcCChHHHHHhhcCCChhHHHHHHHHHHhccCC--CcchHHHHHhcCccccccchhHHhhhHHHHHHHHHHHHHHhhhc
Q 005044 371 AHNGGLVPLLKLLDSKNGSLQHNAAFALYGLADN--EDNVADFIRVGGVQKLQDGEFIVQATKDCVAKTLKRLEEKIHGR 448 (717)
Q Consensus 371 ~~~~~l~~L~~ll~~~~~~v~~~a~~~L~~l~~~--~~~~~~l~~~~~i~~L~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 448 (717)
+..|+++.|++++.+++..++..|+++|.+++.. ++....+.+. +
T Consensus 368 ~~~~~i~~L~~lL~~~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~---------------------------------~ 414 (528)
T 4b8j_A 368 INAGIIGPLVNLLQTAEFDIKKEAAWAISNATSGGSHDQIKYLVSE---------------------------------G 414 (528)
T ss_dssp HHTTCHHHHHHHHHHSCHHHHHHHHHHHHHHHHHSCHHHHHHHHHT---------------------------------T
T ss_pred HHCCCHHHHHHHHhcCCHHHHHHHHHHHHHHHcCCCHHHHHHHHHC---------------------------------C
Confidence 7889999999999999999999999999999864 3444444443 4
Q ss_pred hHHHHHHHHhhcchhHHHHHHHHHHhccCCCC------------CceeeecCCCHHHHHHHhcCCCchhhhhhHHHHHHh
Q 005044 449 VLNHLLYLMRVAEKGVQRRVALALAHLCSPDD------------QRTIFIDGGGLELLLGLLGSTNPKQQLDGAVALFKL 516 (717)
Q Consensus 449 ~~~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~------------~~~~~~~~~~l~~L~~ll~~~~~~v~~~a~~~l~~L 516 (717)
+++.|+.++.++++.++..++.+|.++....+ ....+.+.|++..|..+..+.+++++..|.+++.++
T Consensus 415 ~i~~L~~lL~~~d~~v~~~al~~L~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~l~~L~~~~~~~v~~~a~~il~~~ 494 (528)
T 4b8j_A 415 CIKPLCDLLICPDIRIVTVCLEGLENILKVGETDKTLAAGDVNVFSQMIDEAEGLEKIENLQSHDNNEIYEKAVKILEAY 494 (528)
T ss_dssp CHHHHHHGGGCSCHHHHHHHHHHHHHHHHHHHHHHHHHTCSCCHHHHHHHHTTHHHHHHHGGGCSSHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhhhcccccccHHHHHHHHCCcHHHHHHHHcCCCHHHHHHHHHHHHHH
Confidence 77889999999999999999999999974321 355667889999999999999999999999999988
Q ss_pred hhcc
Q 005044 517 ANKA 520 (717)
Q Consensus 517 ~~~~ 520 (717)
....
T Consensus 495 ~~~e 498 (528)
T 4b8j_A 495 WMDE 498 (528)
T ss_dssp CC--
T ss_pred CCCc
Confidence 7653
No 4
>1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A
Probab=100.00 E-value=2.6e-35 Score=322.29 Aligned_cols=404 Identities=18% Similarity=0.256 Sum_probs=348.2
Q ss_pred HHHHHhhhhhccccchHHHHHHHHHHHHHHHHhhcC--hhhHHHHHhCCChHHHHHhhcCC-CCCccccCCCccchHHHh
Q 005044 58 EVSAQVNVLNTTFSWLEADRAAAKRATHVLAELAKN--EEVVNWIVEGGAVPALVKHLQAP-PTSEADRNLKPFEHEVEK 134 (717)
Q Consensus 58 ~i~~l~~~L~~~~~~~~~~~~~~~~a~~~L~~l~~~--~~~~~~~~~~g~i~~L~~lL~~~-~~~~~~~~~~~~~~~v~~ 134 (717)
.++.+++.|.+. +..++..|++.|.++... ......+++.|++|.|+.+|.++ +. .++.
T Consensus 88 ~i~~lv~~L~s~------~~~~~~~A~~~L~~ll~~~~~~~~~~~~~~g~i~~Lv~~L~~~~~~------------~v~~ 149 (530)
T 1wa5_B 88 ELPQMTQQLNSD------DMQEQLSATVKFRQILSREHRPPIDVVIQAGVVPRLVEFMRENQPE------------MLQL 149 (530)
T ss_dssp CHHHHHHHHSCS------SHHHHHHHHHHHHHHTCCSSSCSHHHHHHTTCHHHHHHTTSTTSCH------------HHHH
T ss_pred HHHHHHHHHcCC------CHHHHHHHHHHHHHHhCCCCCccHHHHHHCCCHHHHHHHhCCCCCH------------HHHH
Confidence 356666665433 445799999999998763 45566788999999999999886 44 8999
Q ss_pred HHHHHHHHhc-CChhhHHHHHhCCChHHHHHHHhccccCCCccchhHHHHHHHHHHHHHhhcCchhhhHHHhcCCcHHHH
Q 005044 135 GSAFALGLLA-VKPEHQQLIVDNGALSHLVNLLKRHMDSNCSRAVNSVIRRAADAITNLAHENSSIKTRVRMEGGIPPLV 213 (717)
Q Consensus 135 ~a~~~L~~l~-~~~~~~~~~~~~~~i~~L~~lL~~~~~~~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~ 213 (717)
.|+++|++++ .+++.+..+...|+++.|+.+|.+.+. +++..|+++|.+++..++..+..+...|+++.|+
T Consensus 150 ~A~~~L~~l~~~~~~~~~~~~~~g~i~~Lv~lL~~~~~--------~vr~~A~~aL~~l~~~~~~~~~~~~~~~~l~~L~ 221 (530)
T 1wa5_B 150 EAAWALTNIASGTSAQTKVVVDADAVPLFIQLLYTGSV--------EVKEQAIWALGNVAGDSTDYRDYVLQCNAMEPIL 221 (530)
T ss_dssp HHHHHHHHHTTSCHHHHHHHHHTTCHHHHHHHHHHCCH--------HHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHhCCCHHHHHHHHHCCCHHHHHHHHcCCCH--------HHHHHHHHHHHHHhCCCccchHHHHHcCcHHHHH
Confidence 9999999999 678889999999999999999997655 8999999999999998888888888999999999
Q ss_pred HhhcCCCHHHHHHHHHHHHHhhccChhhHHHHHhcCCHHHHHHHHcCCCHHHHHHHHHHHHHhhcCChHHHHHHHHcCCh
Q 005044 214 ELLEFTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSEDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGAL 293 (717)
Q Consensus 214 ~ll~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~l 293 (717)
.++.+.++.++..++++|.+|+.+...........++++.|+.++.++++.++..++++|.+++...+.....+++.|++
T Consensus 222 ~ll~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~v 301 (530)
T 1wa5_B 222 GLFNSNKPSLIRTATWTLSNLCRGKKPQPDWSVVSQALPTLAKLIYSMDTETLVDACWAISYLSDGPQEAIQAVIDVRIP 301 (530)
T ss_dssp HGGGSCCHHHHHHHHHHHHHHHCCSSSCCCHHHHGGGHHHHHHHTTCCCHHHHHHHHHHHHHHHSSCHHHHHHHHHTTCH
T ss_pred HHhccCCHHHHHHHHHHHHHHhCCCCCCCcHHHHHhHHHHHHHHHcCCCHHHHHHHHHHHHHHhCCCHHHHHHHHhcCcH
Confidence 99999999999999999999997552444455567899999999999999999999999999998877777888899999
Q ss_pred HHHHHhhccCChHHHHHHHHHHHHHhcCChhhHHHHHhcCChHHHHHHhcCCCHHHHHHHHHHHHHhhcCCC-CchhhHh
Q 005044 294 QPVIGLLSSCCSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQSPDVQLREMSAFALGRLAQDMH-NQAGIAH 372 (717)
Q Consensus 294 ~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~l~~~~~l~~L~~~l~~~~~~v~~~a~~~L~~l~~~~~-~~~~l~~ 372 (717)
+.|+.++.+.++.++..|+++|++++.+++.....+.+.|+++.|+.+|.++++.++..|+|+|++++.+.. ....+++
T Consensus 302 ~~Lv~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~vr~~A~~aL~~l~~~~~~~~~~~~~ 381 (530)
T 1wa5_B 302 KRLVELLSHESTLVQTPALRAVGNIVTGNDLQTQVVINAGVLPALRLLLSSPKENIKKEACWTISNITAGNTEQIQAVID 381 (530)
T ss_dssp HHHHHGGGCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHH
T ss_pred HHHHHHHCCCChhhHHHHHHHHHHHHcCCHHHHHHHHHcchHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 999999999999999999999999998888878888889999999999999999999999999999997543 3456778
Q ss_pred cCChHHHHHhhcCCChhHHHHHHHHHHhccCC--C--cchHHHHHhcCccccccchhHHhhhHHHHHHHHHHHHHHhhhc
Q 005044 373 NGGLVPLLKLLDSKNGSLQHNAAFALYGLADN--E--DNVADFIRVGGVQKLQDGEFIVQATKDCVAKTLKRLEEKIHGR 448 (717)
Q Consensus 373 ~~~l~~L~~ll~~~~~~v~~~a~~~L~~l~~~--~--~~~~~l~~~~~i~~L~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 448 (717)
.|+++.|++++.+++..++..|+++|.+++.. + +....+.+ .+
T Consensus 382 ~~~l~~L~~lL~~~~~~v~~~a~~aL~~l~~~~~~~~~~~~~l~~---------------------------------~~ 428 (530)
T 1wa5_B 382 ANLIPPLVKLLEVAEYKTKKEACWAISNASSGGLQRPDIIRYLVS---------------------------------QG 428 (530)
T ss_dssp TTCHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTTTCTHHHHHHHH---------------------------------TT
T ss_pred CCCHHHHHHHHhcCCHHHHHHHHHHHHHHHhcCCCcHHHHHHHHH---------------------------------CC
Confidence 89999999999999999999999999999753 2 33334444 34
Q ss_pred hHHHHHHHHhhcchhHHHHHHHHHHhccCCCC------------CceeeecCCCHHHHHHHhcCCCchhhhhhHHHHHHh
Q 005044 449 VLNHLLYLMRVAEKGVQRRVALALAHLCSPDD------------QRTIFIDGGGLELLLGLLGSTNPKQQLDGAVALFKL 516 (717)
Q Consensus 449 ~~~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~------------~~~~~~~~~~l~~L~~ll~~~~~~v~~~a~~~l~~L 516 (717)
+++.|+.++.++++.++..++++|.++....+ ....+.+.|+++.|..+..++++.+++.|..+|.++
T Consensus 429 ~l~~L~~ll~~~~~~v~~~al~aL~~l~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~L~~L~~~~~~~v~~~a~~il~~~ 508 (530)
T 1wa5_B 429 CIKPLCDLLEIADNRIIEVTLDALENILKMGEADKEARGLNINENADFIEKAGGMEKIFNCQQNENDKIYEKAYKIIETY 508 (530)
T ss_dssp CHHHHHHHTTTCCHHHHHHHHHHHHHHHHHHHHHHHHHTCSSCHHHHHHHHTTHHHHHHGGGGCSCHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHhCCCHHHHHHHHHHHHHHHHhhhhhhhcccccccHHHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHHH
Confidence 78889999999999999999999999965321 234567889999999999999999999999999998
Q ss_pred hhcc
Q 005044 517 ANKA 520 (717)
Q Consensus 517 ~~~~ 520 (717)
....
T Consensus 509 ~~~~ 512 (530)
T 1wa5_B 509 FGEE 512 (530)
T ss_dssp SSSC
T ss_pred CCcc
Confidence 8653
No 5
>3now_A UNC-45 protein, SD10334P; armadillo repeat, HSP90, myosin, tetra-tricopeptide repeat, binding protein required for myosin function; 2.99A {Drosophila melanogaster}
Probab=100.00 E-value=2.4e-36 Score=331.68 Aligned_cols=417 Identities=19% Similarity=0.211 Sum_probs=341.4
Q ss_pred HHHHHHHHHHhhc-ChhhHHHHH-hCCChHHHHHhhcCCCCCccccCCCccchHHHhHHHHHHHHhcCChhhHHHHHhCC
Q 005044 80 AKRATHVLAELAK-NEEVVNWIV-EGGAVPALVKHLQAPPTSEADRNLKPFEHEVEKGSAFALGLLAVKPEHQQLIVDNG 157 (717)
Q Consensus 80 ~~~a~~~L~~l~~-~~~~~~~~~-~~g~i~~L~~lL~~~~~~~~~~~~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~ 157 (717)
...|+|++.++.. .++....++ ..|+++.|+.++.+++. .++++|++++++++.++++|+.+.+.|
T Consensus 264 ~~~a~~alt~i~~g~~~~~~~~~~~~G~v~~li~Ll~s~~~------------~~q~~A~~al~~aa~~~~~R~~I~~~g 331 (810)
T 3now_A 264 KVRVTVAITALLNGPLDVGNQVVAREGILQMILAMATTDDE------------LQQRVACECLIAASSKKDKAKALCEQG 331 (810)
T ss_dssp HHHHHHHHHHHHSSSHHHHHHHHHTTTHHHHHHHHHHSSCH------------HHHHHHHHHHHHHTTSHHHHHTTHHHH
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHhccchHHHHHHHhCCCCH------------HHHHHHHHHHHHHcCCcHHHHHHHHcC
Confidence 6899999999999 567777666 78999999999998876 999999999999998899999999987
Q ss_pred ChHHHHHHHhccccCCCccchhHHHHHHHHHHHHHhhcCc-hhhhHHHhcCC----cHHHHHhhcCC--CHHHHHHHHHH
Q 005044 158 ALSHLVNLLKRHMDSNCSRAVNSVIRRAADAITNLAHENS-SIKTRVRMEGG----IPPLVELLEFT--DTKVQRAAAGA 230 (717)
Q Consensus 158 ~i~~L~~lL~~~~~~~~~~~~~~~~~~a~~~L~~l~~~~~-~~~~~~~~~~~----i~~L~~ll~~~--~~~v~~~a~~~ 230 (717)
+ +.|..++++.+. .++..|+.+|+++..... ......+..|. ++.++++|.++ +++++..|+++
T Consensus 332 v-~~L~~Ll~s~~~--------~vr~~Al~~L~kl~s~~~~d~~~~~~~~g~i~~Lv~~l~~lL~~~~~d~~v~~~Avea 402 (810)
T 3now_A 332 V-DILKRLYHSKND--------GIRVRALVGLCKLGSYGGQDAAIRPFGDGAALKLAEACRRFLIKPGKDKDIRRWAADG 402 (810)
T ss_dssp H-HHHHHHTTCSCH--------HHHHHHHHHHHHHHTTTTTTTSCCSSTTTHHHHHHHHHHHHHHCSSCCSSHHHHHHHH
T ss_pred c-HHHHHHHcCCCH--------HHHHHHHHHHHHhccccccCccccchhhccHHHHHHHHHHHhcCCCCCHHHHHHHHHH
Confidence 5 999999986554 789999999999975322 12212233333 56788888877 88999999999
Q ss_pred HHHhhccChhhHHHHH-hcCCHHHHHHHHcCCCHHHHHHHHHHHHHhhcCCh----------------------------
Q 005044 231 LRTLAFKNDENKNQIV-ECNALPTLILMLRSEDSAIHYEAVGVIGNLVHSSP---------------------------- 281 (717)
Q Consensus 231 L~~L~~~~~~~~~~~~-~~g~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~---------------------------- 281 (717)
|.+|+. +++.+..++ +.|++|.|+.+|+++++.++..|+++|.|++.+.+
T Consensus 403 LayLS~-~~~vk~~lv~d~g~Ip~LV~LL~s~d~~i~~~al~~L~NLt~~~d~q~~~~~l~~la~~s~~~v~~~~~ld~~ 481 (810)
T 3now_A 403 LAYLTL-DAECKEKLIEDKASIHALMDLARGGNQSCLYGVVTTFVNLCNAYEKQEMLPEMIELAKFAKQHIPEEHELDDV 481 (810)
T ss_dssp HHHHTT-SHHHHHHHHHCHHHHHHHHHHHHTTCGGGHHHHHHHHHHHTTCSCCCCCCCSCGGGTTTTCCSCCCSSCHHHH
T ss_pred HHHHhC-CcHHHHHHHHccchHHHHHHHhCCCChHHHHHHHHHHHHHcCCchhhhhhHHHHHHHHHhhccCccccccccH
Confidence 999997 667777766 57999999999999999999999999999987542
Q ss_pred -HHH---HHHHHcCChHHHHHhhccCChHHHHHHHHHHHHHhcCChhhHHHHHhcCChHHHHHHhcCCCHHHHHHHHHHH
Q 005044 282 -NIK---KEVLAAGALQPVIGLLSSCCSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQSPDVQLREMSAFAL 357 (717)
Q Consensus 282 -~~~---~~~~~~g~l~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~l~~~~~l~~L~~~l~~~~~~v~~~a~~~L 357 (717)
..+ +.+++.|+++.|+.++.++++.+++.|+|+|.|++ .+++++..+++.|++|.|+.++.++++..++.|+|+|
T Consensus 482 ~~v~~r~~~VveaGaVp~LV~LL~s~s~~vqe~Aa~aL~NLA-~d~~~r~~Vv~~Gaip~Lv~LL~s~~~~~k~~Aa~AL 560 (810)
T 3now_A 482 DFINKRITVLANEGITTALCALAKTESHNSQELIARVLNAVC-GLKELRGKVVQEGGVKALLRMALEGTEKGKRHATQAL 560 (810)
T ss_dssp HHHHHHHHHHHHTTHHHHHHHHHTCCCHHHHHHHHHHHHHHH-TSHHHHHHHHHTTHHHHHHHHHHSSCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCcCHHHHHHHHcCCCHHHHHHHHHHHHHHc-CCHHHHHHHHHCCCHHHHHHHHccCCHHHHHHHHHHH
Confidence 122 67889999999999999999999999999999998 5677999999999999999999999999999999999
Q ss_pred HHhhcCCCCchhh---HhcCChHHHHHhhcCCCh-hHHHHHHHHHHhccCC-CcchHHHHHhcCccccccchhHHh-hhH
Q 005044 358 GRLAQDMHNQAGI---AHNGGLVPLLKLLDSKNG-SLQHNAAFALYGLADN-EDNVADFIRVGGVQKLQDGEFIVQ-ATK 431 (717)
Q Consensus 358 ~~l~~~~~~~~~l---~~~~~l~~L~~ll~~~~~-~v~~~a~~~L~~l~~~-~~~~~~l~~~~~i~~L~~~~~~~~-~~~ 431 (717)
.+|+.+......+ ...+++++|+++|+++.. ..+..|+++|.||+.. ++.+..+++.|+++.|..+..... ..+
T Consensus 561 ~nL~~~~~p~~~~~~~~~~~aIppLv~LL~~~~~~l~~~eAl~AL~NLa~~~d~~~~~Ii~aG~l~~Lv~LL~s~~~~Vq 640 (810)
T 3now_A 561 ARIGITINPEVSFSGQRSLDVIRPLLNLLQQDCTALENFESLMALTNLASMNESVRQRIIKEQGVSKIEYYLMEDHLYLT 640 (810)
T ss_dssp HHHHHHSCHHHHTTTHHHHHTHHHHHHTTSTTSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHHHSCCTTHH
T ss_pred HHHhcCCChhhhhcchhhhcHHHHHHHHhCCCCcHHHHHHHHHHHHHHhcCCHHHHHHHHHcCCHHHHHHHHcCCCHHHH
Confidence 9999754433222 124689999999986633 4456899999999886 467888999999999887544322 223
Q ss_pred HHHHHHHHHH-------HHHhh-hchHHHHHHHHhhcchhHHHHHHHHHHhccC-CCCCceeeec-CCCHHHHHHHhcCC
Q 005044 432 DCVAKTLKRL-------EEKIH-GRVLNHLLYLMRVAEKGVQRRVALALAHLCS-PDDQRTIFID-GGGLELLLGLLGST 501 (717)
Q Consensus 432 ~~~~~~~~~l-------~~~~~-~~~~~~L~~ll~~~~~~v~~~a~~aL~~l~~-~~~~~~~~~~-~~~l~~L~~ll~~~ 501 (717)
.....++.++ ..... .+.++.|+.++.+++..+|..|+++|.+++. ++...+.+++ .|+++.|++++.++
T Consensus 641 ~~A~~~L~NLa~~~~~~~~~v~~~g~l~~Lv~LL~s~d~~vq~~Aa~ALanLt~~s~~~~~~ii~~~g~I~~Lv~LL~s~ 720 (810)
T 3now_A 641 RAAAQCLCNLVMSEDVIKMFEGNNDRVKFLALLCEDEDEETATACAGALAIITSVSVKCCEKILAIASWLDILHTLIANP 720 (810)
T ss_dssp HHHHHHHHHHTTSHHHHHHHHSSSSHHHHHHHGGGCSSHHHHHHHHHHHHHHHHHCHHHHHHHHTSTTHHHHHHHHHTCS
T ss_pred HHHHHHHHHHhCChHHHHHHHhccCcHHHHHHHhcCCCHHHHHHHHHHHHHHhCCCHHHHHHHHHHcCCHHHHHHHHCCC
Confidence 3333333332 12233 5799999999999999999999999999988 4556666677 89999999999999
Q ss_pred CchhhhhhHHHHHHhhhc
Q 005044 502 NPKQQLDGAVALFKLANK 519 (717)
Q Consensus 502 ~~~v~~~a~~~l~~L~~~ 519 (717)
+..+|..|+|++.|++.+
T Consensus 721 d~~vq~~A~~aL~NL~~~ 738 (810)
T 3now_A 721 SPAVQHRGIVIILNMINA 738 (810)
T ss_dssp SHHHHHHHHHHHHHHHTT
T ss_pred CHHHHHHHHHHHHHHHhC
Confidence 999999999999999874
No 6
>3now_A UNC-45 protein, SD10334P; armadillo repeat, HSP90, myosin, tetra-tricopeptide repeat, binding protein required for myosin function; 2.99A {Drosophila melanogaster}
Probab=100.00 E-value=1.6e-35 Score=325.20 Aligned_cols=416 Identities=16% Similarity=0.186 Sum_probs=344.3
Q ss_pred HHHHHHhhhhhccccchHHHHHHHHHHHHHHHHhhcChhhHHHHHhCCChHHHHHhhcCCCCC---------------cc
Q 005044 57 SEVSAQVNVLNTTFSWLEADRAAAKRATHVLAELAKNEEVVNWIVEGGAVPALVKHLQAPPTS---------------EA 121 (717)
Q Consensus 57 ~~i~~l~~~L~~~~~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~g~i~~L~~lL~~~~~~---------------~~ 121 (717)
..++.++.++.+. +..++..|++++.+++.++..|..+++.|+ |.|+.++++.+.. ..
T Consensus 290 G~v~~li~Ll~s~------~~~~q~~A~~al~~aa~~~~~R~~I~~~gv-~~L~~Ll~s~~~~vr~~Al~~L~kl~s~~~ 362 (810)
T 3now_A 290 GILQMILAMATTD------DELQQRVACECLIAASSKKDKAKALCEQGV-DILKRLYHSKNDGIRVRALVGLCKLGSYGG 362 (810)
T ss_dssp THHHHHHHHHHSS------CHHHHHHHHHHHHHHTTSHHHHHTTHHHHH-HHHHHHTTCSCHHHHHHHHHHHHHHHTTTT
T ss_pred chHHHHHHHhCCC------CHHHHHHHHHHHHHHcCCcHHHHHHHHcCc-HHHHHHHcCCCHHHHHHHHHHHHHhccccc
Confidence 4556666666543 455689999999999999999999999875 9999998754310 00
Q ss_pred -ccCCC---------------------ccchHHHhHHHHHHHHhcCChhhHHHHH-hCCChHHHHHHHhccccCCCccch
Q 005044 122 -DRNLK---------------------PFEHEVEKGSAFALGLLAVKPEHQQLIV-DNGALSHLVNLLKRHMDSNCSRAV 178 (717)
Q Consensus 122 -~~~~~---------------------~~~~~v~~~a~~~L~~l~~~~~~~~~~~-~~~~i~~L~~lL~~~~~~~~~~~~ 178 (717)
+.... ..|++++..|+++|.+|+.+++.+..++ +.|+++.|+.+|++.+.
T Consensus 363 ~d~~~~~~~~g~i~~Lv~~l~~lL~~~~~d~~v~~~AveaLayLS~~~~vk~~lv~d~g~Ip~LV~LL~s~d~------- 435 (810)
T 3now_A 363 QDAAIRPFGDGAALKLAEACRRFLIKPGKDKDIRRWAADGLAYLTLDAECKEKLIEDKASIHALMDLARGGNQ------- 435 (810)
T ss_dssp TTTSCCSSTTTHHHHHHHHHHHHHHCSSCCSSHHHHHHHHHHHHTTSHHHHHHHHHCHHHHHHHHHHHHTTCG-------
T ss_pred cCccccchhhccHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHhCCcHHHHHHHHccchHHHHHHHhCCCCh-------
Confidence 00001 1256899999999999998888888877 47999999999997654
Q ss_pred hHHHHHHHHHHHHHhhcCc-----------------------------hhh---hHHHhcCCcHHHHHhhcCCCHHHHHH
Q 005044 179 NSVIRRAADAITNLAHENS-----------------------------SIK---TRVRMEGGIPPLVELLEFTDTKVQRA 226 (717)
Q Consensus 179 ~~~~~~a~~~L~~l~~~~~-----------------------------~~~---~~~~~~~~i~~L~~ll~~~~~~v~~~ 226 (717)
.++..++++|.|++.+.+ ..+ +.+++.|++|.|+.+++++++.+++.
T Consensus 436 -~i~~~al~~L~NLt~~~d~q~~~~~l~~la~~s~~~v~~~~~ld~~~~v~~r~~~VveaGaVp~LV~LL~s~s~~vqe~ 514 (810)
T 3now_A 436 -SCLYGVVTTFVNLCNAYEKQEMLPEMIELAKFAKQHIPEEHELDDVDFINKRITVLANEGITTALCALAKTESHNSQEL 514 (810)
T ss_dssp -GGHHHHHHHHHHHTTCSCCCCCCCSCGGGTTTTCCSCCCSSCHHHHHHHHHHHHHHHHTTHHHHHHHHHTCCCHHHHHH
T ss_pred -HHHHHHHHHHHHHcCCchhhhhhHHHHHHHHHhhccCccccccccHHHHHHHHHHHHHCcCHHHHHHHHcCCCHHHHHH
Confidence 899999999999998542 122 56788899999999999999999999
Q ss_pred HHHHHHHhhccChhhHHHHHhcCCHHHHHHHHcCCCHHHHHHHHHHHHHhhcC-ChHHHH-HHHHcCChHHHHHhhccCC
Q 005044 227 AAGALRTLAFKNDENKNQIVECNALPTLILMLRSEDSAIHYEAVGVIGNLVHS-SPNIKK-EVLAAGALQPVIGLLSSCC 304 (717)
Q Consensus 227 a~~~L~~L~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~-~~~~~~-~~~~~g~l~~L~~ll~~~~ 304 (717)
|+|+|.||+. +++++..+++.|+++.|+.+|.++++.++..|+|+|.+++.+ ++...- .....|++++|+.+|.++.
T Consensus 515 Aa~aL~NLA~-d~~~r~~Vv~~Gaip~Lv~LL~s~~~~~k~~Aa~AL~nL~~~~~p~~~~~~~~~~~aIppLv~LL~~~~ 593 (810)
T 3now_A 515 IARVLNAVCG-LKELRGKVVQEGGVKALLRMALEGTEKGKRHATQALARIGITINPEVSFSGQRSLDVIRPLLNLLQQDC 593 (810)
T ss_dssp HHHHHHHHHT-SHHHHHHHHHTTHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHSCHHHHTTTHHHHHTHHHHHHTTSTTS
T ss_pred HHHHHHHHcC-CHHHHHHHHHCCCHHHHHHHHccCCHHHHHHHHHHHHHHhcCCChhhhhcchhhhcHHHHHHHHhCCCC
Confidence 9999999996 788999999999999999999999999999999999999864 332210 0012469999999998653
Q ss_pred -hHHHHHHHHHHHHHhcCChhhHHHHHhcCChHHHHHHhcCCCHHHHHHHHHHHHHhhcCCCCchhhHh-cCChHHHHHh
Q 005044 305 -SESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQSPDVQLREMSAFALGRLAQDMHNQAGIAH-NGGLVPLLKL 382 (717)
Q Consensus 305 -~~~~~~a~~~L~~l~~~~~~~~~~l~~~~~l~~L~~~l~~~~~~v~~~a~~~L~~l~~~~~~~~~l~~-~~~l~~L~~l 382 (717)
...+..|+++|.|++..+++.+..+++.|+++.|+.++.++++.++..|+++|+||+.+++.+..++. .|.++.|+.+
T Consensus 594 ~~l~~~eAl~AL~NLa~~~d~~~~~Ii~aG~l~~Lv~LL~s~~~~Vq~~A~~~L~NLa~~~~~~~~~v~~~g~l~~Lv~L 673 (810)
T 3now_A 594 TALENFESLMALTNLASMNESVRQRIIKEQGVSKIEYYLMEDHLYLTRAAAQCLCNLVMSEDVIKMFEGNNDRVKFLALL 673 (810)
T ss_dssp CHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHHHSCCTTHHHHHHHHHHHHTTSHHHHHHHHSSSSHHHHHHHG
T ss_pred cHHHHHHHHHHHHHHhcCCHHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhCChHHHHHHHhccCcHHHHHHH
Confidence 34556899999999988888888999999999999999999999999999999999998877777775 6889999999
Q ss_pred hcCCChhHHHHHHHHHHhccC-CCcchHHHHHhcCccccccchhHHhhhHHHHHHHHHHHHHHhhhchHHHHHHHHhhcc
Q 005044 383 LDSKNGSLQHNAAFALYGLAD-NEDNVADFIRVGGVQKLQDGEFIVQATKDCVAKTLKRLEEKIHGRVLNHLLYLMRVAE 461 (717)
Q Consensus 383 l~~~~~~v~~~a~~~L~~l~~-~~~~~~~l~~~~~i~~L~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~L~~ll~~~~ 461 (717)
+.+.+..++..|+|+|.||+. ++.....+.+. .++++.|+.++.+++
T Consensus 674 L~s~d~~vq~~Aa~ALanLt~~s~~~~~~ii~~--------------------------------~g~I~~Lv~LL~s~d 721 (810)
T 3now_A 674 CEDEDEETATACAGALAIITSVSVKCCEKILAI--------------------------------ASWLDILHTLIANPS 721 (810)
T ss_dssp GGCSSHHHHHHHHHHHHHHHHHCHHHHHHHHTS--------------------------------TTHHHHHHHHHTCSS
T ss_pred hcCCCHHHHHHHHHHHHHHhCCCHHHHHHHHHH--------------------------------cCCHHHHHHHHCCCC
Confidence 999999999999999999987 55555555551 247788999999999
Q ss_pred hhHHHHHHHHHHhccCCC-CCceeeecCCCHHHHHHHhcCC---CchhhhhhHHHHHHhhhcc
Q 005044 462 KGVQRRVALALAHLCSPD-DQRTIFIDGGGLELLLGLLGST---NPKQQLDGAVALFKLANKA 520 (717)
Q Consensus 462 ~~v~~~a~~aL~~l~~~~-~~~~~~~~~~~l~~L~~ll~~~---~~~v~~~a~~~l~~L~~~~ 520 (717)
.+++..|+++|.|++.+. +....+.+.|+++.|..+++.+ +.++.+.|..+|.++....
T Consensus 722 ~~vq~~A~~aL~NL~~~s~e~~~~l~e~G~i~~L~~LL~~~d~~~~~i~e~Al~aL~~ll~~g 784 (810)
T 3now_A 722 PAVQHRGIVIILNMINAGEEIAKKLFETDIMELLSGLGQLPDDTRAKAREVATQCLAAAERYR 784 (810)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHTSTHHHHHTTSCCCTTSTTHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhCCHHHHHHHHHCCCHHHHHHHHhCcccCcHHHHHHHHHHHHHHHhCC
Confidence 999999999999997654 3677889999999999999754 6889999999999998753
No 7
>3ul1_B Importin subunit alpha-2; arm repeat, armadillo repeat, nuclear transport, nuclear LOC signal binding, importin beta binding; 1.90A {Mus musculus} PDB: 3ukx_B 3uky_B 3ukz_B 3ukw_B 3ul0_B 3oqs_A 3rz9_A 3rzx_A 3uvu_A 1q1s_C 1q1t_C 3knd_A 1ejy_I 1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C ...
Probab=100.00 E-value=1.4e-34 Score=313.07 Aligned_cols=371 Identities=22% Similarity=0.300 Sum_probs=317.5
Q ss_pred HHHHHhhhhhccccchHHHHHHHHHHHHHHHHhhc-ChhhHHHHHhCCChHHHHHhhcCCCCCccccCCCccchHHHhHH
Q 005044 58 EVSAQVNVLNTTFSWLEADRAAAKRATHVLAELAK-NEEVVNWIVEGGAVPALVKHLQAPPTSEADRNLKPFEHEVEKGS 136 (717)
Q Consensus 58 ~i~~l~~~L~~~~~~~~~~~~~~~~a~~~L~~l~~-~~~~~~~~~~~g~i~~L~~lL~~~~~~~~~~~~~~~~~~v~~~a 136 (717)
.+|.++++|... .++.++.+|+|+|++++. +++++..+++.|++|.|+.+|++++. ++++.|
T Consensus 101 ~ip~LV~lL~~~-----~~~~lq~~Aa~aL~nias~~~e~~~~vv~~GaIp~Lv~lL~s~~~------------~v~e~A 163 (510)
T 3ul1_B 101 LIPKFVSFLGKT-----DCSPIQFESAWALTNIASGTSEQTKAVVDGGAIPAFISLLASPHA------------HISEQA 163 (510)
T ss_dssp HHHHHHHHTTCT-----TCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTCSCH------------HHHHHH
T ss_pred CHHHHHHHHCCC-----CCHHHHHHHHHHHHHHhcCCHHHHHHHHHCCCHHHHHHHHcCCCH------------HHHHHH
Confidence 567777777543 245579999999999988 78999999999999999999998766 999999
Q ss_pred HHHHHHhc-CChhhHHHHHhCCChHHHHHHHhccccCCCccchhHHHHHHHHHHHHHhhcCchhhhHHHhcCCcHHHHHh
Q 005044 137 AFALGLLA-VKPEHQQLIVDNGALSHLVNLLKRHMDSNCSRAVNSVIRRAADAITNLAHENSSIKTRVRMEGGIPPLVEL 215 (717)
Q Consensus 137 ~~~L~~l~-~~~~~~~~~~~~~~i~~L~~lL~~~~~~~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~l 215 (717)
+++|+||+ ++++++..+.+.|+++.|+.++...+..... ..+++.+++++.+++.............+++|.|+.+
T Consensus 164 ~~aL~nLa~d~~~~r~~v~~~G~i~~Ll~lL~~~~~~~~~---~~~~~~a~~~L~nl~~~~~~~~~~~~~~~~lp~L~~L 240 (510)
T 3ul1_B 164 VWALGNIAGDGSAFRDLVIKHGAIDPLLALLAVPDLSTLA---CGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTLVRL 240 (510)
T ss_dssp HHHHHHHHTTCHHHHHHHHHTTCHHHHHHHTCSSCGGGSC---HHHHHHHHHHHHHHHCCCSSCCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCHHHHHHHHHcCChHHHHHHHHhccchhhh---HHHHHHHHHHHHHHhhcccchhHHHHHHhHHHHHHHH
Confidence 99999999 7899999999999999999999875432211 1678899999999998665555555557889999999
Q ss_pred hcCCCHHHHHHHHHHHHHhhccChhhHHHHHhcCCHHHHHHHHcCCCHHHHHHHHHHHHHhhcCChHHHHHHHHcCChHH
Q 005044 216 LEFTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSEDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQP 295 (717)
Q Consensus 216 l~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~l~~ 295 (717)
+.+++++++..++++|.+|+.+.++....+.+.|+++.|+.+|.+++..++..++++|++++..++..+..+++.|+++.
T Consensus 241 L~~~~~~v~~~A~~aL~~L~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~al~aL~nl~~~~~~~~~~i~~~g~l~~ 320 (510)
T 3ul1_B 241 LHHNDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGATELPIVTPALRAIGNIVTGTDEQTQKVIDAGALAV 320 (510)
T ss_dssp TTCSCHHHHHHHHHHHHHHTSSCHHHHHHHHTTTCHHHHHHHHTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTGGGG
T ss_pred HhcCCHHHHHHHHHHHHHHhhchhhhHHHHHhcccchhhhhhhcCCChhhhhHHHHHHHHhhcCCHHHHHHHhhccchHH
Confidence 99999999999999999999877777888899999999999999999999999999999999998988899999999999
Q ss_pred HHHhhccCChHHHHHHHHHHHHHhcCChhhHHHHHhcCChHHHHHHhcCCCHHHHHHHHHHHHHhhcCC--CCchhhHhc
Q 005044 296 VIGLLSSCCSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQSPDVQLREMSAFALGRLAQDM--HNQAGIAHN 373 (717)
Q Consensus 296 L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~l~~~~~l~~L~~~l~~~~~~v~~~a~~~L~~l~~~~--~~~~~l~~~ 373 (717)
|+.++.+++..+++.|+|+|+|++.+++.....+.+.|+++.|+.++.+++..++..|+|+|+|++.+. +....+++.
T Consensus 321 L~~LL~~~~~~v~~~A~~aL~nl~a~~~~~~~~v~~~g~i~~Lv~lL~~~~~~v~~~Aa~aL~Nl~~~~~~~~~~~L~~~ 400 (510)
T 3ul1_B 321 FPSLLTNPKTNIQKEATWTMSNITAGRQDQIQQVVNHGLVPFLVGVLSKADFKTQKEAAWAITNYTSGGTVEQIVYLVHC 400 (510)
T ss_dssp CC-CTTCSSHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCCHHHHHHHHHT
T ss_pred HHHHhcCCCHHHHHHHHHHHHHHHcCcHHHHHHHHhcCCHHHHHHHHcCCCHHHHHHHHHHHHHHHccCCHHHHHHHHHC
Confidence 999999999999999999999999888899999999999999999999999999999999999999743 334678999
Q ss_pred CChHHHHHhhcCCChhHHHHHHHHHHhccCCCc---chHHHHHhcCccccccchhHHhhhHHHHHHHHHHHHHHhhhchH
Q 005044 374 GGLVPLLKLLDSKNGSLQHNAAFALYGLADNED---NVADFIRVGGVQKLQDGEFIVQATKDCVAKTLKRLEEKIHGRVL 450 (717)
Q Consensus 374 ~~l~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~---~~~~l~~~~~i~~L~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 450 (717)
|++++|+++|.+.+++++..++++|.|+....+ ....+. ....+.|.+
T Consensus 401 g~i~~L~~LL~~~d~~i~~~~L~aL~nil~~~~~~~~~~~~~-----------------------------~~iee~ggl 451 (510)
T 3ul1_B 401 GIIEPLMNLLSAKDTKIIQVILDAISNIFQAAEKLGETEKLS-----------------------------IMIEECGGL 451 (510)
T ss_dssp TCHHHHHHGGGCSCHHHHHHHHHHHHHHHHHHHTTTCHHHHH-----------------------------HHHHHTTHH
T ss_pred CCHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhHhccchHHHH-----------------------------HHHHHcCcH
Confidence 999999999999999999999999999863211 100000 011234567
Q ss_pred HHHHHHHhhcchhHHHHHHHHHHhccC
Q 005044 451 NHLLYLMRVAEKGVQRRVALALAHLCS 477 (717)
Q Consensus 451 ~~L~~ll~~~~~~v~~~a~~aL~~l~~ 477 (717)
..|-.+..+++.+|...|...|-..-.
T Consensus 452 ~~ie~Lq~~~n~~i~~~A~~iie~yf~ 478 (510)
T 3ul1_B 452 DKIEALQRHENESVYKASLNLIEKYFS 478 (510)
T ss_dssp HHHHHGGGCSSHHHHHHHHHHHHHHCC
T ss_pred HHHHHHHcCCCHHHHHHHHHHHHHHCC
Confidence 777778788899999999999987754
No 8
>3nmz_A APC variant protein; protein-protein complex, armadillo repeats, cell adhesion-CE complex; 3.01A {Homo sapiens}
Probab=100.00 E-value=5.4e-35 Score=304.48 Aligned_cols=365 Identities=19% Similarity=0.222 Sum_probs=300.0
Q ss_pred HHHHHHHHhhcChhhHHHHHhCCChHHHHHhhcCCCCCccccCCCccchHHHhHHHHHHHHhc-CChhhHHHHHhCCCh-
Q 005044 82 RATHVLAELAKNEEVVNWIVEGGAVPALVKHLQAPPTSEADRNLKPFEHEVEKGSAFALGLLA-VKPEHQQLIVDNGAL- 159 (717)
Q Consensus 82 ~a~~~L~~l~~~~~~~~~~~~~g~i~~L~~lL~~~~~~~~~~~~~~~~~~v~~~a~~~L~~l~-~~~~~~~~~~~~~~i- 159 (717)
+..+.|..+..+++.|..+++.|++|.|+++|+..+.+...-++...+++++..|+|+|.||+ .+++......+.+++
T Consensus 48 ~~~~~ll~~~~~~~~~~~~~~~g~~p~lv~~l~~~~~~~~~~~~~~~~~~~~~~a~~al~ni~~~~~~~~~~~~~~~~~~ 127 (458)
T 3nmz_A 48 DMSRTLLAMSSSQDSCISMRQSGCLPLLIQLLHGNDKDSVLLGNSRGSKEARARASAALHNIIHSQPDDKRGRREIRVLH 127 (458)
T ss_dssp HHHHHHHHHHSSTTHHHHHHHHTCHHHHHHHHTCTTCCSCC---CCCCHHHHHHHHHHHHHHHHHSCSCHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCcHHHHHHHCCCHHHHHHHHhcccccccccccccCCHHHHHHHHHHHHHHHccCcchhHHHHHHHHHH
Confidence 478889999999999999999999999999999754321111223345699999999999999 777777777777766
Q ss_pred ---------HHHHHHHhccc-cCC-----CccchhHHHHHHHHHHHHHhhcCchhhhHHHhcCCcHHHHHhhcC------
Q 005044 160 ---------SHLVNLLKRHM-DSN-----CSRAVNSVIRRAADAITNLAHENSSIKTRVRMEGGIPPLVELLEF------ 218 (717)
Q Consensus 160 ---------~~L~~lL~~~~-~~~-----~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~------ 218 (717)
+.+++++.... .+. ...+....+..|+|+|.|++. ++++|..+.+.|+++.|+.++..
T Consensus 128 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~qAv~aL~nls~-~~e~R~~i~~~G~l~~Lv~LL~~~~~~~~ 206 (458)
T 3nmz_A 128 LLEQIRAYCETCWEWQEAHEPGMDQDKNPMPAPVEHQICPAVCVLMKLSF-DEEHRHAMNELGGLQAIAELLQVDCEMYG 206 (458)
T ss_dssp HHHHHHHHHHHHHHHHTTTSSSSCCCSCC--CCCTTTTHHHHHHHHHHTT-SHHHHHHHHHTTHHHHHHHHHHHHHHHST
T ss_pred HHHHhhhhhHHHHHHHHhhccccccccCCccchhhHHHHHHHHHHHHhcC-CHHHHHHHHHCCCHHHHHHHHhhhhcccc
Confidence 55666666542 111 011112344589999999987 58899999999999999999942
Q ss_pred -----CCHHHHHHHHHHHHHhhccChhhHHHHHh-cCCHHHHHHHHcCCCHHHHHHHHHHHHHhhcC-ChHHHHHHHHcC
Q 005044 219 -----TDTKVQRAAAGALRTLAFKNDENKNQIVE-CNALPTLILMLRSEDSAIHYEAVGVIGNLVHS-SPNIKKEVLAAG 291 (717)
Q Consensus 219 -----~~~~v~~~a~~~L~~L~~~~~~~~~~~~~-~g~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~-~~~~~~~~~~~g 291 (717)
.++.++..|+|+|.||+.+++.++..+.. .|++|.|+++|.+++++++..|+|+|++|+.. ++..+..+.+.|
T Consensus 207 ~~~~~~~~~l~~~Aa~aL~nLa~~~~~~k~~i~~~~GaIp~LV~LL~s~~~~v~~~A~~aL~nLs~~~~~~~k~~I~~~G 286 (458)
T 3nmz_A 207 LTNDHYSITLRRYAGMALTNLTFGDVANKATLCSMKGCMRALVAQLKSESEDLQQVIASVLRNLSWRADVNSKKTLREVG 286 (458)
T ss_dssp TCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHCHHHHHHHHHGGGCSCHHHHHHHHHHHHHHTSSCCHHHHHHHHHTT
T ss_pred cccCCCCHHHHHHHHHHHHHHhCCCcccHHHHHHcCCcHHHHHHHHhCCCHHHHHHHHHHHHHHhcCCCHHHHHHHHHcC
Confidence 34679999999999999877767777754 56699999999999999999999999999875 567888999999
Q ss_pred ChHHHHHhh-ccCChHHHHHHHHHHHHHhcCChhhHHHHH-hcCChHHHHHHhcCCCH----HHHHHHHHHHHHhhc---
Q 005044 292 ALQPVIGLL-SSCCSESQREAALLLGQFAATDSDCKVHIV-QRGAVRPLIEMLQSPDV----QLREMSAFALGRLAQ--- 362 (717)
Q Consensus 292 ~l~~L~~ll-~~~~~~~~~~a~~~L~~l~~~~~~~~~~l~-~~~~l~~L~~~l~~~~~----~v~~~a~~~L~~l~~--- 362 (717)
+++.|+++| .+.+..+++.++.+|+||+..+++++..+. ..|+++.|+.+|.+.+. .+++.|+++|.||+.
T Consensus 287 aI~~LV~lLl~s~~~~v~~~A~~aL~nLs~~~~~nk~~I~~~~Gal~~Lv~LL~~~~~~~~~~v~~~A~~aL~nLs~~~a 366 (458)
T 3nmz_A 287 SVKALMECALEVKKESTLKSVLSALWNLSAHCTENKADICAVDGALAFLVGTLTYRSQTNTLAIIESGGGILRNVSSLIA 366 (458)
T ss_dssp HHHHHHHHHTTCCSHHHHHHHHHHHHHHHHHCHHHHHHHHHSTTHHHHHHHHTTCCCSSSTTHHHHHHHHHHHHHHHHHT
T ss_pred CHHHHHHHHhcCCCHHHHHHHHHHHHHHccCCHHHHHHHHHhcCcHHHHHHHhcCCCCcchHHHHHHHHHHHHHHHhccc
Confidence 999999975 556789999999999999875667777777 79999999999987543 589999999999995
Q ss_pred -CCCCchhhHhcCChHHHHHhhcCCChhHHHHHHHHHHhcc-CCCcchHHHHHhcCccccccchhHHhhhHHHHHHHHHH
Q 005044 363 -DMHNQAGIAHNGGLVPLLKLLDSKNGSLQHNAAFALYGLA-DNEDNVADFIRVGGVQKLQDGEFIVQATKDCVAKTLKR 440 (717)
Q Consensus 363 -~~~~~~~l~~~~~l~~L~~ll~~~~~~v~~~a~~~L~~l~-~~~~~~~~l~~~~~i~~L~~~~~~~~~~~~~~~~~~~~ 440 (717)
++.++..+.+.|+++.|+++|.+++..+++.|+++|.||+ .+++++..+.+.|
T Consensus 367 ~~~~~~~~i~~~G~i~~Lv~LL~~~~~~v~~~A~~aL~nLa~~~~~~~~~i~~~G------------------------- 421 (458)
T 3nmz_A 367 TNEDHRQILRENNCLQTLLQHLKSHSLTIVSNACGTLWNLSARNPKDQEALWDMG------------------------- 421 (458)
T ss_dssp TCHHHHHHHHHTTHHHHHHHHSSCSCHHHHHHHHHHHHHHHSSCHHHHHHHHHHT-------------------------
T ss_pred CCHHHHHHHHHcccHHHHHHHHcCCChHHHHHHHHHHHHHHcCCHHHHHHHHHCC-------------------------
Confidence 5666778899999999999999999999999999999998 4677777777766
Q ss_pred HHHHhhhchHHHHHHHHhhcchhHHHHHHHHHHhccCCCC
Q 005044 441 LEEKIHGRVLNHLLYLMRVAEKGVQRRVALALAHLCSPDD 480 (717)
Q Consensus 441 l~~~~~~~~~~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~ 480 (717)
+++.|+.++.++++.++..|+++|.||+.+..
T Consensus 422 --------~I~~Lv~LL~s~~~~v~~~Aa~AL~nL~~~~p 453 (458)
T 3nmz_A 422 --------AVSMLKNLIHSKHKMIAMGSAAALRNLMANRP 453 (458)
T ss_dssp --------HHHHHHTTTTCSSHHHHHHHHHHHHHHHTCCS
T ss_pred --------CHHHHHHHHhCCCHHHHHHHHHHHHHHHcCCH
Confidence 67779999999999999999999999987643
No 9
>1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A
Probab=100.00 E-value=1.7e-34 Score=316.86 Aligned_cols=432 Identities=22% Similarity=0.232 Sum_probs=366.0
Q ss_pred HHHHHHhhhhhccccchHHHHHHHHHHHHHHHHhhcChhhHHHHHhCCChHHHHHhhcCCCCCccccCCCccchHHHhHH
Q 005044 57 SEVSAQVNVLNTTFSWLEADRAAAKRATHVLAELAKNEEVVNWIVEGGAVPALVKHLQAPPTSEADRNLKPFEHEVEKGS 136 (717)
Q Consensus 57 ~~i~~l~~~L~~~~~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~g~i~~L~~lL~~~~~~~~~~~~~~~~~~v~~~a 136 (717)
..++.++..|... .+..++..++++|.+++.+++++..+.+.|++|.|+++|++++. .++..|
T Consensus 59 ~~i~~Lv~~L~~~-----~~~~~~~~a~~~L~~ls~~~~~~~~i~~~g~i~~L~~lL~~~~~------------~v~~~a 121 (529)
T 1jdh_A 59 QMVSAIVRTMQNT-----NDVETARCTAGTLHNLSHHREGLLAIFKSGGIPALVKMLGSPVD------------SVLFYA 121 (529)
T ss_dssp HHHHHHHHHHHHC-----CCHHHHHHHHHHHHHHTTSHHHHHHHHHTTHHHHHHHHTTCSCH------------HHHHHH
T ss_pred chHHHHHHHHhcC-----CCHHHHHHHHHHHHHHHcCchhHHHHHHcCCHHHHHHHHcCCCH------------HHHHHH
Confidence 4566777766532 24457899999999999988899999999999999999988765 999999
Q ss_pred HHHHHHhc-CChhhHHHHHhCCChHHHHHHHhccccCCCccchhHHHHHHHHHHHHHhhcCchhhhHHHhcCCcHHHHHh
Q 005044 137 AFALGLLA-VKPEHQQLIVDNGALSHLVNLLKRHMDSNCSRAVNSVIRRAADAITNLAHENSSIKTRVRMEGGIPPLVEL 215 (717)
Q Consensus 137 ~~~L~~l~-~~~~~~~~~~~~~~i~~L~~lL~~~~~~~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~l 215 (717)
+++|.+++ .++..+..+.+.|+++.|+.++++.+. .++..++.+|.+++..++..+..+...|+++.|+.+
T Consensus 122 ~~~L~~l~~~~~~~~~~i~~~g~i~~L~~ll~~~~~--------~~~~~~~~~L~~la~~~~~~~~~i~~~~~i~~L~~l 193 (529)
T 1jdh_A 122 ITTLHNLLLHQEGAKMAVRLAGGLQKMVALLNKTNV--------KFLAITTDCLQILAYGNQESKLIILASGGPQALVNI 193 (529)
T ss_dssp HHHHHHHHHHCTTHHHHHHHHTHHHHHHHGGGCCCH--------HHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHH
T ss_pred HHHHHHHhcCCcchHHHHHHcCCHHHHHHHHhcCCH--------HHHHHHHHHHHHHHhCCHHHHHHHHHCCCHHHHHHH
Confidence 99999999 667788888899999999999987654 888899999999999888899999999999999999
Q ss_pred hcCCC-HHHHHHHHHHHHHhhccChhhHHHHHhcCCHHHHHHHHcCCCHHHHHHHHHHHHHhhcCChHHHHHHHHcCChH
Q 005044 216 LEFTD-TKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSEDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQ 294 (717)
Q Consensus 216 l~~~~-~~v~~~a~~~L~~L~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~l~ 294 (717)
+++++ ...+..++.+|.+++. .+.++..+.+.|+++.|+.++.++++.++..++++|.+++...+... ...++++
T Consensus 194 l~~~~~~~~~~~a~~~L~~l~~-~~~~~~~~~~~g~~~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~---~~~~~i~ 269 (529)
T 1jdh_A 194 MRTYTYEKLLWTTSRVLKVLSV-CSSNKPAIVEAGGMQALGLHLTDPSQRLVQNCLWTLRNLSDAATKQE---GMEGLLG 269 (529)
T ss_dssp HHHCCCHHHHHHHHHHHHHHTT-STTHHHHHHHTTHHHHHHTTTTSSCHHHHHHHHHHHHHHHTTCTTCS---CCHHHHH
T ss_pred HHhCChHHHHHHHHHHHHHHhc-CcccHHHHHHCCCHHHHHHHHhCCChHHHHHHHHHHHHHhcCChhhH---HHHhHHH
Confidence 98754 5677788999999997 77888999999999999999999999999999999999987643321 1236799
Q ss_pred HHHHhhccCChHHHHHHHHHHHHHhcCChhhHHHHHhcCChHHHHHHhcC--CCHHHHHHHHHHHHHhhcCCCC----ch
Q 005044 295 PVIGLLSSCCSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQS--PDVQLREMSAFALGRLAQDMHN----QA 368 (717)
Q Consensus 295 ~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~l~~~~~l~~L~~~l~~--~~~~v~~~a~~~L~~l~~~~~~----~~ 368 (717)
.|++++.+.+++++..++++|++++..+++.+..+.+.|+++.|+.++.+ .++.++..++++|+||+.+.+. +.
T Consensus 270 ~L~~ll~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~v~~L~~ll~~~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~ 349 (529)
T 1jdh_A 270 TLVQLLGSDDINVVTCAAGILSNLTCNNYKNKMMVCQVGGIEALVRTVLRAGDREDITEPAICALRHLTSRHQEAEMAQN 349 (529)
T ss_dssp HHHHHTTCSCHHHHHHHHHHHHHHTTTCHHHHHHHHHTTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSSSTTHHHHHH
T ss_pred HHHHHHcCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHcCChHHHHHHHHccCCHHHHHHHHHHHHHHHHcCCchHHHHHH
Confidence 99999999999999999999999998778888999999999999999975 3489999999999999976432 45
Q ss_pred hhHhcCChHHHHHhhcCCC-hhHHHHHHHHHHhccCCCcchHHHHHhcCccccccchhHHhh-h-H--------------
Q 005044 369 GIAHNGGLVPLLKLLDSKN-GSLQHNAAFALYGLADNEDNVADFIRVGGVQKLQDGEFIVQA-T-K-------------- 431 (717)
Q Consensus 369 ~l~~~~~l~~L~~ll~~~~-~~v~~~a~~~L~~l~~~~~~~~~l~~~~~i~~L~~~~~~~~~-~-~-------------- 431 (717)
.+.+.|+++.|++++.+++ +.++..++++|.|++.++++...+.+.|+++.|++....... . .
T Consensus 350 ~i~~~~~i~~L~~lL~~~~~~~v~~~a~~~l~nl~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~l~n~~~~~~ 429 (529)
T 1jdh_A 350 AVRLHYGLPVVVKLLHPPSHWPLIKATVGLIRNLALCPANHAPLREQGAIPRLVQLLVRAHQDTQRRTSMGGTQQQFVEG 429 (529)
T ss_dssp HHHHTTCHHHHHHTTSTTCCHHHHHHHHHHHHHHTTSGGGHHHHHHTTHHHHHHHHHHHHHHHHC-----------CBTT
T ss_pred HHHHcCChhHHHHHhccccchHHHHHHHHHHHHHhcChhhhHHHHHcCCHHHHHHHHHHHhHHHHHHHhcccCchhhhcc
Confidence 7888999999999998876 699999999999999988888899999999988875432111 0 0
Q ss_pred -------HHHHHHHHHH-------HHHhhhchHHHHHHHHhhcchhHHHHHHHHHHhccCCCCCceeeecCCCHHHHHHH
Q 005044 432 -------DCVAKTLKRL-------EEKIHGRVLNHLLYLMRVAEKGVQRRVALALAHLCSPDDQRTIFIDGGGLELLLGL 497 (717)
Q Consensus 432 -------~~~~~~~~~l-------~~~~~~~~~~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~~~~~~l~~L~~l 497 (717)
.....++.++ ....+.++++.|+.++.+++++++..++++|++++..+..+..+.+.|+++.|..+
T Consensus 430 ~~~~~i~~~~~~al~~L~~~~~~~~~l~~~~~v~~l~~ll~~~~~~v~~~a~~~l~~l~~~~~~~~~i~~~~~~~~L~~l 509 (529)
T 1jdh_A 430 VRMEEIVEGCTGALHILARDVHNRIVIRGLNTIPLFVQLLYSPIENIQRVAAGVLCELAQDKEAAEAIEAEGATAPLTEL 509 (529)
T ss_dssp BCHHHHHHHHHHHHHHHTTSHHHHHHHHHTTCHHHHHHGGGCSCHHHHHHHHHHHHHHTTSHHHHHHHHHTTCHHHHHHG
T ss_pred ccHHHHHHHHHHHHHHHhcCchHHHHHhccCCccHHHHHHcCCchHHHHHHHHHHHHHhcCHHHHHHHHHcCChHHHHHH
Confidence 1111222222 22457789999999999999999999999999998776677778899999999999
Q ss_pred hcCCCchhhhhhHHHHHHhh
Q 005044 498 LGSTNPKQQLDGAVALFKLA 517 (717)
Q Consensus 498 l~~~~~~v~~~a~~~l~~L~ 517 (717)
+.+++++++..|.++|.+|+
T Consensus 510 ~~~~~~~v~~~a~~aL~~l~ 529 (529)
T 1jdh_A 510 LHSRNEGVATYAAAVLFRMS 529 (529)
T ss_dssp GGCSSHHHHHHHHHHHHHHC
T ss_pred hcCCCHHHHHHHHHHHHhcC
Confidence 99999999999999999874
No 10
>3tpo_A Importin subunit alpha-2; nuclear import, protein transport; 2.10A {Mus musculus} PDB: 1qgk_B 1qgr_B
Probab=100.00 E-value=3.2e-34 Score=312.20 Aligned_cols=368 Identities=22% Similarity=0.305 Sum_probs=317.3
Q ss_pred HHHHHHhhhhhccccchHHHHHHHHHHHHHHHHhhc-ChhhHHHHHhCCChHHHHHhhcCCCCCccccCCCccchHHHhH
Q 005044 57 SEVSAQVNVLNTTFSWLEADRAAAKRATHVLAELAK-NEEVVNWIVEGGAVPALVKHLQAPPTSEADRNLKPFEHEVEKG 135 (717)
Q Consensus 57 ~~i~~l~~~L~~~~~~~~~~~~~~~~a~~~L~~l~~-~~~~~~~~~~~g~i~~L~~lL~~~~~~~~~~~~~~~~~~v~~~ 135 (717)
..+|.++++|... .++.++.+|+|+|.+++. +++++..+++.|++|.|+.+|.+++. .+++.
T Consensus 119 G~ip~Lv~lL~~~-----~~~~~q~~Aa~aL~nia~~~~~~~~~vv~~Gaip~Lv~LL~s~~~------------~v~e~ 181 (529)
T 3tpo_A 119 GLIPKFVSFLGKT-----DCSPIQFESAWALTNIASGTSEQTKAVVDGGAIPAFISLLASPHA------------HISEQ 181 (529)
T ss_dssp THHHHHHHHHTCT-----TCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTCSCH------------HHHHH
T ss_pred CCHHHHHHHHcCC-----CCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHcCCCH------------HHHHH
Confidence 3566677776543 245579999999999998 67888899999999999999998877 99999
Q ss_pred HHHHHHHhc-CChhhHHHHHhCCChHHHHHHHhccccCCCccchhHHHHHHHHHHHHHhhcCchhhhHHHhcCCcHHHHH
Q 005044 136 SAFALGLLA-VKPEHQQLIVDNGALSHLVNLLKRHMDSNCSRAVNSVIRRAADAITNLAHENSSIKTRVRMEGGIPPLVE 214 (717)
Q Consensus 136 a~~~L~~l~-~~~~~~~~~~~~~~i~~L~~lL~~~~~~~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ 214 (717)
|+++|+||+ ++++++..+.+.|+++.|+.+|...+..... ..+++.++++|.+++.............+++|.|+.
T Consensus 182 A~~aL~nLa~~~~~~r~~i~~~g~i~~Ll~lL~~~~~~~~~---~~~~~~a~~~L~nl~~~~~~~~~~~~~~~~lp~L~~ 258 (529)
T 3tpo_A 182 AVWALGNIAGAGSAFRDLVIKHGAIDPLLALLAVPDLSTLA---CGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTLVR 258 (529)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHTTCHHHHHHTTCSSCGGGSC---HHHHHHHHHHHHHHHCCCTTCCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHhccCHHHHHHHHHcCCcHHHHHHHhccchhHhH---HHHHHHHHHHHHHHHhcccchhhHHHHhhHHHHHHH
Confidence 999999999 8899999999999999999999875432211 167889999999999866555555556788999999
Q ss_pred hhcCCCHHHHHHHHHHHHHhhccChhhHHHHHhcCCHHHHHHHHcCCCHHHHHHHHHHHHHhhcCChHHHHHHHHcCChH
Q 005044 215 LLEFTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSEDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQ 294 (717)
Q Consensus 215 ll~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~l~ 294 (717)
++.+++++++..++|+|.+++.+.++....+...|+++.|+.+|.+++..++..++++|++++.+++..+..+++.|+++
T Consensus 259 LL~~~~~~v~~~a~~aL~~l~~~~~~~~~~v~~~g~i~~Lv~lL~~~~~~v~~~a~~aL~nl~~~~~~~~~~i~~~g~l~ 338 (529)
T 3tpo_A 259 LLHHNDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGATELPIVTPALRAIGNIVTGTDEQTQKVIDAGALA 338 (529)
T ss_dssp HTTSSCHHHHHHHHHHHHHHHSSCHHHHHHHHTTTCHHHHHHHHTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTGGG
T ss_pred HhcCCcHHHHHHHHHHHHHhhhhhhhhHHHHHhccchHHHHHHhcCCChhHHHHHHHHHHHHHccchHHHHHHhhcccHH
Confidence 99999999999999999999987778888889999999999999999999999999999999999898889999999999
Q ss_pred HHHHhhccCChHHHHHHHHHHHHHhcCChhhHHHHHhcCChHHHHHHhcCCCHHHHHHHHHHHHHhhcCC--CCchhhHh
Q 005044 295 PVIGLLSSCCSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQSPDVQLREMSAFALGRLAQDM--HNQAGIAH 372 (717)
Q Consensus 295 ~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~l~~~~~l~~L~~~l~~~~~~v~~~a~~~L~~l~~~~--~~~~~l~~ 372 (717)
.|+.++.+++..++..|+|+|+|++.+++.....+.+.|+++.|+.++.+++..++..|+|+|+|++.+. +....+++
T Consensus 339 ~L~~LL~~~~~~i~~~a~~aL~nl~~~~~~~~~~v~~~g~i~~Lv~lL~~~~~~v~~~A~~aL~nl~~~~~~~~~~~l~~ 418 (529)
T 3tpo_A 339 VFPSLLTNPKTNIQKEATWTMSNITAGRQDQIQQVVNHGLVPFLVGVLSKADFKTQKAAAWAITNYTSGGTVEQIVYLVH 418 (529)
T ss_dssp GHHHHTTCSSHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHSCHHHHHHHHH
T ss_pred HHHHHHcCCCHHHHHHHHHHHHHHhcccHHHHHHHHhcCcHHHHHHHhcCCCHHHHHHHHHHHHHHHcCCCHHHHHHHHH
Confidence 9999999999999999999999999988898999999999999999999999999999999999999743 33467899
Q ss_pred cCChHHHHHhhcCCChhHHHHHHHHHHhccCCCc-------chHHHHHhcCccccccchhHHhhhHHHHHHHHHHHHHHh
Q 005044 373 NGGLVPLLKLLDSKNGSLQHNAAFALYGLADNED-------NVADFIRVGGVQKLQDGEFIVQATKDCVAKTLKRLEEKI 445 (717)
Q Consensus 373 ~~~l~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~-------~~~~l~~~~~i~~L~~~~~~~~~~~~~~~~~~~~l~~~~ 445 (717)
.|++++|+++|.+.+++++..++++|.||....+ ....+.
T Consensus 419 ~g~i~~L~~LL~~~d~~i~~~~L~aL~nil~~~~~~~~~~~~~~~ie--------------------------------- 465 (529)
T 3tpo_A 419 CGIIEPLMNLLSAKDTKIIQVILDAISNIFQAAEKLGETEKLSIMIE--------------------------------- 465 (529)
T ss_dssp TTCHHHHHHGGGCSCHHHHHHHHHHHHHHHHHHHTTTCHHHHHHHHH---------------------------------
T ss_pred CcCHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhHhccChHHHHHHHH---------------------------------
Confidence 9999999999999999999999999999863111 111122
Q ss_pred hhchHHHHHHHHhhcchhHHHHHHHHHHhccC
Q 005044 446 HGRVLNHLLYLMRVAEKGVQRRVALALAHLCS 477 (717)
Q Consensus 446 ~~~~~~~L~~ll~~~~~~v~~~a~~aL~~l~~ 477 (717)
+.|++..|-.+..+++.+|...|...|-..-.
T Consensus 466 e~ggl~~ie~Lq~~~n~~i~~~A~~iie~yf~ 497 (529)
T 3tpo_A 466 ECGGLDKIEALQRHENESVYKASLNLIEKYFS 497 (529)
T ss_dssp HTTCHHHHTGGGGCSSHHHHHHHHHHHHHHC-
T ss_pred HCCcHHHHHHHHcCCCHHHHHHHHHHHHHHCC
Confidence 34456667777788899999999999977643
No 11
>3l6x_A Catenin delta-1; catenin, armadillo, ARM, JMD, CE adhesion, complex, cell-CELL adhesion, ARVCF, delta-catenin DP120, JAC-1, cell membrane, membrane; 2.40A {Homo sapiens} PDB: 3l6y_A
Probab=100.00 E-value=1.2e-34 Score=308.04 Aligned_cols=364 Identities=19% Similarity=0.199 Sum_probs=307.2
Q ss_pred HhCCChHHHHHhhcCCCCCccccCCCccchHHHhHHHHHHHHhc-CChhhHHHHHhCCChHHHHHHHhccccCCCccchh
Q 005044 101 VEGGAVPALVKHLQAPPTSEADRNLKPFEHEVEKGSAFALGLLA-VKPEHQQLIVDNGALSHLVNLLKRHMDSNCSRAVN 179 (717)
Q Consensus 101 ~~~g~i~~L~~lL~~~~~~~~~~~~~~~~~~v~~~a~~~L~~l~-~~~~~~~~~~~~~~i~~L~~lL~~~~~~~~~~~~~ 179 (717)
...+.+|.|+.+|.+++. .++..|+++|.+++ .+++++..+++.|+|+.|+.+|++.+.
T Consensus 45 ~~~~~i~~LV~~L~s~~~------------~~q~~Aa~~L~~La~~~~~~k~~V~~~G~Ip~LV~LL~s~~~-------- 104 (584)
T 3l6x_A 45 WRQPELPEVIAMLGFRLD------------AVKSNAAAYLQHLCYRNDKVKTDVRKLKGIPVLVGLLDHPKK-------- 104 (584)
T ss_dssp CCCCCHHHHHHHTTCSCH------------HHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHGGGCSSH--------
T ss_pred cccccHHHHHHHHCCCCH------------HHHHHHHHHHHHHHcCChHHHHHHHHcCCcHHHHHHHCCCCH--------
Confidence 356789999999988766 99999999999999 799999999999999999999998765
Q ss_pred HHHHHHHHHHHHHhhc-CchhhhHHHhcCCcHHHHHhhcC-CCHHHHHHHHHHHHHhhccChhhHHHHHhcCCHHHHHHH
Q 005044 180 SVIRRAADAITNLAHE-NSSIKTRVRMEGGIPPLVELLEF-TDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILM 257 (717)
Q Consensus 180 ~~~~~a~~~L~~l~~~-~~~~~~~~~~~~~i~~L~~ll~~-~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~g~i~~L~~l 257 (717)
++++.|+++|.||+.. ++.++..+.+.|+++.|+.+|++ .+.++++.++++|++|+. .++++..+++ ++++.|+++
T Consensus 105 ~vq~~Aa~AL~nLa~~~~~~nk~~I~~~GaIp~LV~LL~s~~~~~~~e~aa~aL~nLS~-~~~~k~~I~~-~alp~Lv~L 182 (584)
T 3l6x_A 105 EVHLGACGALKNISFGRDQDNKIAIKNCDGVPALVRLLRKARDMDLTEVITGTLWNLSS-HDSIKMEIVD-HALHALTDE 182 (584)
T ss_dssp HHHHHHHHHHHHHTSSSCHHHHHHHHHTTHHHHHHHHHHHCCSHHHHHHHHHHHHHHTT-SGGGHHHHHH-HTHHHHHHH
T ss_pred HHHHHHHHHHHHHHccCCHHHHHHHHHcCCHHHHHHHHcCCCCHHHHHHHHHHHHHHhC-CchhhHHHHh-ccHHHHHHH
Confidence 9999999999999985 68899999999999999999987 678999999999999997 7888888886 579999998
Q ss_pred Hc------------------CCCHHHHHHHHHHHHHhhcCChHHHHHHHHc-CChHHHHHhhcc------CChHHHHHHH
Q 005044 258 LR------------------SEDSAIHYEAVGVIGNLVHSSPNIKKEVLAA-GALQPVIGLLSS------CCSESQREAA 312 (717)
Q Consensus 258 l~------------------~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~-g~l~~L~~ll~~------~~~~~~~~a~ 312 (717)
+. .++++++..|+++|.||+..+++.++.+.+. |+++.|+.++.+ .+....+.|+
T Consensus 183 L~~p~sg~~~~~~~~~k~~~~~d~~V~~nAa~~L~NLs~~~~~~R~~i~~~~Gli~~LV~~L~~~~~~~~~~~~~~enav 262 (584)
T 3l6x_A 183 VIIPHSGWEREPNEDCKPRHIEWESVLTNTAGCLRNVSSERSEARRKLRECDGLVDALIFIVQAEIGQKDSDSKLVENCV 262 (584)
T ss_dssp THHHHHCCC----------CCCCHHHHHHHHHHHHHHTSSCHHHHHHHHHSTTHHHHHHHHHHHHHHTTCCSCHHHHHHH
T ss_pred HhcccccccccccccccccccccHHHHHHHHHHHHHHhcCCHHHHHHHHHcCCcHHHHHHHHHHhhcccCccHHHHHHHH
Confidence 71 2367999999999999998888888888885 556799999975 4567899999
Q ss_pred HHHHHHhcCCh-------------------------hhHHHHHhcCChHHHHHHhc-CCCHHHHHHHHHHHHHhhcCCCC
Q 005044 313 LLLGQFAATDS-------------------------DCKVHIVQRGAVRPLIEMLQ-SPDVQLREMSAFALGRLAQDMHN 366 (717)
Q Consensus 313 ~~L~~l~~~~~-------------------------~~~~~l~~~~~l~~L~~~l~-~~~~~v~~~a~~~L~~l~~~~~~ 366 (717)
++|.||+.... .....+.+.++++.|+.+|+ +.++.+++.|+++|.||+.+...
T Consensus 263 ~aL~NLs~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~Gve~L~~~~~v~~Ll~LL~~s~~~~v~E~Aa~AL~nL~ag~~~ 342 (584)
T 3l6x_A 263 CLLRNLSYQVHREIPQAERYQEAAPNVANNTGTSPARGYELLFQPEVVRIYISLLKESKTPAILEASAGAIQNLCAGRWT 342 (584)
T ss_dssp HHHHHHHTTHHHHSTTCCC--------------CCCCGGGGGGSHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHSSCSH
T ss_pred HHHHHhhccccccccchhhhhhhcccccccccccCchhHHHHhcccHHHHHHHHHccCCCHHHHHHHHHHHHHHHcCCcc
Confidence 99999974311 01112233455678899995 46899999999999999986432
Q ss_pred -----chhhHhcCChHHHHHhhcCCChhHHHHHHHHHHhccCCCcchHHHHHhcCccccccchhHHhhhHHHHHHHHHHH
Q 005044 367 -----QAGIAHNGGLVPLLKLLDSKNGSLQHNAAFALYGLADNEDNVADFIRVGGVQKLQDGEFIVQATKDCVAKTLKRL 441 (717)
Q Consensus 367 -----~~~l~~~~~l~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~l~~~~~i~~L~~~~~~~~~~~~~~~~~~~~l 441 (717)
+..+.+.++++.|+++|.+++..++..|+++|.||+.+..++..+ ..
T Consensus 343 ~~~~~~~~v~~~~glp~Lv~LL~s~~~~v~~~A~~aL~nLs~~~~~~~~I-~~--------------------------- 394 (584)
T 3l6x_A 343 YGRYIRSALRQEKALSAIADLLTNEHERVVKAASGALRNLAVDARNKELI-GK--------------------------- 394 (584)
T ss_dssp HHHHHHHHHTSHHHHHHHHHGGGCSCHHHHHHHHHHHHHHHTTCSCHHHH-HH---------------------------
T ss_pred ccHHHHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHHHhCChhHHHHH-Hh---------------------------
Confidence 234556789999999999999999999999999999988776544 33
Q ss_pred HHHhhhchHHHHHHHHhhc--------chhHHHHHHHHHHhccCC-CCCceeeecCCCHHHHHHHhcCC--CchhhhhhH
Q 005044 442 EEKIHGRVLNHLLYLMRVA--------EKGVQRRVALALAHLCSP-DDQRTIFIDGGGLELLLGLLGST--NPKQQLDGA 510 (717)
Q Consensus 442 ~~~~~~~~~~~L~~ll~~~--------~~~v~~~a~~aL~~l~~~-~~~~~~~~~~~~l~~L~~ll~~~--~~~v~~~a~ 510 (717)
++++.|+.+|.++ ..+++..++++|+|++.. +++++.+.+.|+++.|++++.++ .+.+++.|+
T Consensus 395 ------g~ip~LV~LL~~~~~~~~~~~s~~v~~~a~~tL~NL~a~~~~~~~~I~~~g~I~~Lv~LL~s~~~~~~v~k~Aa 468 (584)
T 3l6x_A 395 ------HAIPNLVKNLPGGQQNSSWNFSEDTVISILNTINEVIAENLEAAKKLRETQGIEKLVLINKSGNRSEKEVRAAA 468 (584)
T ss_dssp ------HHHHHHHHTSSSSSCSGGGTCCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHTCSSSCHHHHHHHH
T ss_pred ------CCHHHHHHHhcCCcccccccchHHHHHHHHHHHHHHhcCCHHHHHHHHHCCChHHHHHHHhCCCCChHHHHHHH
Confidence 3788899999876 357889999999999755 55888889999999999999986 788999999
Q ss_pred HHHHHhhhcc
Q 005044 511 VALFKLANKA 520 (717)
Q Consensus 511 ~~l~~L~~~~ 520 (717)
++|++|..+.
T Consensus 469 ~vL~nl~~~~ 478 (584)
T 3l6x_A 469 LVLQTIWGYK 478 (584)
T ss_dssp HHHHHHHTSH
T ss_pred HHHHHHHcCH
Confidence 9999998754
No 12
>2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens}
Probab=100.00 E-value=1.6e-33 Score=314.91 Aligned_cols=437 Identities=22% Similarity=0.250 Sum_probs=364.8
Q ss_pred HHHHHhhhhhccccchHHHHHHHHHHHHHHHHhhcChhhHHHHHhC-CChHHHHHhhcCCCCCccccCCCccchHHHhHH
Q 005044 58 EVSAQVNVLNTTFSWLEADRAAAKRATHVLAELAKNEEVVNWIVEG-GAVPALVKHLQAPPTSEADRNLKPFEHEVEKGS 136 (717)
Q Consensus 58 ~i~~l~~~L~~~~~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~-g~i~~L~~lL~~~~~~~~~~~~~~~~~~v~~~a 136 (717)
.++.++++|... +..++..|+.+|.+++.+...+..++.. |+++.|+++|.+... ++++..|
T Consensus 15 ~i~~Lv~lL~~~------~~~vr~~A~~~L~~La~~~~~~~~i~~~~~~i~~Lv~~L~~~~~-----------~~~~~~A 77 (644)
T 2z6h_A 15 AIPELTKLLNDE------DQVVVNKAAVMVHQLSKKEASRHAIMRSPQMVSAIVRTMQNTND-----------VETARCT 77 (644)
T ss_dssp THHHHHHHHTCS------CHHHHHHHHHHHHHHHTSTTHHHHHTTCHHHHHHHHHHHHSCCC-----------HHHHHHH
T ss_pred hHHHHHHHHcCC------CHHHHHHHHHHHHHHHCCChhHHHHHhccChHHHHHHHHhcCCC-----------HHHHHHH
Confidence 367777777642 5568999999999999977777777654 889999999986522 2899999
Q ss_pred HHHHHHhcCChhhHHHHHhCCChHHHHHHHhccccCCCccchhHHHHHHHHHHHHHhhcCchhhhHHHhcCCcHHHHHhh
Q 005044 137 AFALGLLAVKPEHQQLIVDNGALSHLVNLLKRHMDSNCSRAVNSVIRRAADAITNLAHENSSIKTRVRMEGGIPPLVELL 216 (717)
Q Consensus 137 ~~~L~~l~~~~~~~~~~~~~~~i~~L~~lL~~~~~~~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll 216 (717)
+.+|.+++..++.+..+.+.|+++.|+.+|++.+. .++..|+++|.+++...+..+..+.+.|+++.|+.++
T Consensus 78 ~~~L~~Ls~~~~~~~~i~~~g~i~~Lv~lL~~~~~--------~v~~~A~~aL~nL~~~~~~~~~~v~~~g~i~~Lv~lL 149 (644)
T 2z6h_A 78 AGTLHNLSHHREGLLAIFKSGGIPALVKMLGSPVD--------SVLFYAITTLHNLLLHQEGAKMAVRLAGGLQKMVALL 149 (644)
T ss_dssp HHHHHHHTTSHHHHHHHHTTTHHHHHHHHTTCSSH--------HHHHHHHHHHHHHHHHSTTHHHHHHHTTHHHHHHHGG
T ss_pred HHHHHHHhcChhhHHHHHHcCCHHHHHHHHhCCCH--------HHHHHHHHHHHHHHhCcchhHHHHHHCCChHHHHHHH
Confidence 99999999778899999999999999999988765 8999999999999998777888888899999999999
Q ss_pred cCCCHHHHHHHHHHHHHhhccChhhHHHHHhcCCHHHHHHHHcCCC-HHHHHHHHHHHHHhhcCChHHHHHHHHcCChHH
Q 005044 217 EFTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSED-SAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQP 295 (717)
Q Consensus 217 ~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~g~i~~L~~ll~~~~-~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~l~~ 295 (717)
+++++.++..++.+|.+++..+++++..+.+.|+++.|++++++.+ ..++..++.+|.+++.. +..+..+++.|+++.
T Consensus 150 ~~~~~~~~~~a~~~L~~La~~~~~~~~~i~~~g~v~~Lv~lL~~~~~~~~~~~a~~~L~nLs~~-~~~~~~l~~~g~l~~ 228 (644)
T 2z6h_A 150 NKTNVKFLAITTDCLQILAYGNQESKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSVC-SSNKPAIVEAGGMQA 228 (644)
T ss_dssp GCCCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHTTCCCHHHHHHHHHHHHHHTTC-TTHHHHHHHTTHHHH
T ss_pred CcCCHHHHHHHHHHHHHHHhcCcHHHHHHHHcCChHHHHHHHHcCChHHHHHHHHHHHHHHhcC-cccHHHHHHCCCHHH
Confidence 9999999999999999999878899999999999999999998764 57788899999999854 556677887777776
Q ss_pred HHHhh---------------------------------------ccCChHHHHHHHHHHHHHhcCChhhHHHHHhcCChH
Q 005044 296 VIGLL---------------------------------------SSCCSESQREAALLLGQFAATDSDCKVHIVQRGAVR 336 (717)
Q Consensus 296 L~~ll---------------------------------------~~~~~~~~~~a~~~L~~l~~~~~~~~~~l~~~~~l~ 336 (717)
|+.++ .+.+++++..++++|++++..++..+..+.+.|+++
T Consensus 229 L~~ll~~~~~~~~~~a~~~L~nL~~~~~~~~~~~~~i~~Lv~lL~~~d~~v~~~a~~aL~~L~~~~~~~~~~v~~~g~v~ 308 (644)
T 2z6h_A 229 LGLHLTDPSQRLVQNCLWTLRNLSDAATKQEGMEGLLGTLVQLLGSDDINVVTCAAGILSNLTCNNYKNKMMVCQVGGIE 308 (644)
T ss_dssp HHTTTTCSCHHHHHHHHHHHHHHGGGCTTCCSCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHH
T ss_pred HHHHHhcCCHHHHHHHHHHHHHHhhcchhhhhhhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHcCCHH
Confidence 66554 445667777888888888776677788888999999
Q ss_pred HHHHHhcC-C-CHHHHHHHHHHHHHhhcCCCC----chhhHhcCChHHHHHhhcCCC-hhHHHHHHHHHHhccCCCcchH
Q 005044 337 PLIEMLQS-P-DVQLREMSAFALGRLAQDMHN----QAGIAHNGGLVPLLKLLDSKN-GSLQHNAAFALYGLADNEDNVA 409 (717)
Q Consensus 337 ~L~~~l~~-~-~~~v~~~a~~~L~~l~~~~~~----~~~l~~~~~l~~L~~ll~~~~-~~v~~~a~~~L~~l~~~~~~~~ 409 (717)
.|+.++.+ + .+.++..++++|++|+..... +..+...++++.|+++|.+.+ +.++..++++|.||+.++++..
T Consensus 309 ~Lv~lL~~~~~~~~v~~~a~~aL~nL~~~~~~~~~~q~~v~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nLa~~~~~~~ 388 (644)
T 2z6h_A 309 ALVRTVLRAGDREDITEPAICALRHLTSRHQEAEMAQNAVRLHYGLPVVVKLLHPPSHWPLIKATVGLIRNLALCPANHA 388 (644)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHTSSSTTHHHHHHHHHHTTHHHHHHHTTSTTCCHHHHHHHHHHHHHHTTSGGGHH
T ss_pred HHHHHHHccCCcHHHHHHHHHHHHHHhcCCchHHHHHHHHHHccChHHHHHHhCccCchHHHHHHHHHHHHHccCHHHHH
Confidence 99999976 3 379999999999999975332 345778899999999998865 7999999999999999888889
Q ss_pred HHHHhcCccccccchhHHh-----------------------hhHHHHHHHHHHH-------HHHhhhchHHHHHHHHhh
Q 005044 410 DFIRVGGVQKLQDGEFIVQ-----------------------ATKDCVAKTLKRL-------EEKIHGRVLNHLLYLMRV 459 (717)
Q Consensus 410 ~l~~~~~i~~L~~~~~~~~-----------------------~~~~~~~~~~~~l-------~~~~~~~~~~~L~~ll~~ 459 (717)
.+.+.|+++.|++...... ........++.++ ......++++.|+.++.+
T Consensus 389 ~i~~~~~i~~Lv~lL~~~~~~vr~~a~~al~n~~~~~~~~~~~v~~~a~~aL~~La~~~~~~~~l~~~~~i~~Lv~lL~~ 468 (644)
T 2z6h_A 389 PLREQGAIPRLVQLLVRAHQDTQRRTSMGGTQQQFVEGVRMEEIVEGCTGALHILARDVHNRIVIRGLNTIPLFVQLLYS 468 (644)
T ss_dssp HHHHTTHHHHHHHHHHHHHHHHTTC----------CCSSCHHHHHHHHHHHHHHHTTSHHHHHHHHHTTCHHHHHHHTTC
T ss_pred HHHHcCCHHHHHHHHhccchhhhhHhhhccccchhcccccHHHHHHHHHHHHHHHhcCHHHHHHHHhCCcHHHHHHHHcC
Confidence 9999999998887544321 1111222222222 234477899999999999
Q ss_pred cchhHHHHHHHHHHhccCCCCCceeeecCCCHHHHHHHhcCCCchhhhhhHHHHHHhhhcc
Q 005044 460 AEKGVQRRVALALAHLCSPDDQRTIFIDGGGLELLLGLLGSTNPKQQLDGAVALFKLANKA 520 (717)
Q Consensus 460 ~~~~v~~~a~~aL~~l~~~~~~~~~~~~~~~l~~L~~ll~~~~~~v~~~a~~~l~~L~~~~ 520 (717)
+++.++..++++|.+++..++.+..+.+.|+++.|..++.+++++++..|+++|.+++.+.
T Consensus 469 ~~~~v~~~a~~aL~~l~~~~~~~~~i~~~g~l~~L~~ll~~~~~~vr~~A~~aL~~l~~~~ 529 (644)
T 2z6h_A 469 PIENIQRVAAGVLCELAQDKEAAEAIEAEGATAPLTELLHSRNEGVATYAAAVLFRMSEDK 529 (644)
T ss_dssp SCHHHHHHHHHHHHHHHTSHHHHHHHHHTTCHHHHHHHTTCSCHHHHHHHHHHHHHHTTTS
T ss_pred CCHHHHHHHHHHHHHHHcCHHHHHHHHHcCChhHHHHHHcCCCHHHHHHHHHHHHHHhccC
Confidence 9999999999999999887667778888999999999999999999999999999998753
No 13
>3l6x_A Catenin delta-1; catenin, armadillo, ARM, JMD, CE adhesion, complex, cell-CELL adhesion, ARVCF, delta-catenin DP120, JAC-1, cell membrane, membrane; 2.40A {Homo sapiens} PDB: 3l6y_A
Probab=100.00 E-value=6.7e-34 Score=302.32 Aligned_cols=372 Identities=19% Similarity=0.229 Sum_probs=305.0
Q ss_pred HHHHHhhhhhccccchHHHHHHHHHHHHHHHHhhc-ChhhHHHHHhCCChHHHHHhhcCCCCCccccCCCccchHHHhHH
Q 005044 58 EVSAQVNVLNTTFSWLEADRAAAKRATHVLAELAK-NEEVVNWIVEGGAVPALVKHLQAPPTSEADRNLKPFEHEVEKGS 136 (717)
Q Consensus 58 ~i~~l~~~L~~~~~~~~~~~~~~~~a~~~L~~l~~-~~~~~~~~~~~g~i~~L~~lL~~~~~~~~~~~~~~~~~~v~~~a 136 (717)
.++.++.+|.+. +..++..|+++|.+++. +++++..+++.|+||.|+.+|.+++. .+++.|
T Consensus 49 ~i~~LV~~L~s~------~~~~q~~Aa~~L~~La~~~~~~k~~V~~~G~Ip~LV~LL~s~~~------------~vq~~A 110 (584)
T 3l6x_A 49 ELPEVIAMLGFR------LDAVKSNAAAYLQHLCYRNDKVKTDVRKLKGIPVLVGLLDHPKK------------EVHLGA 110 (584)
T ss_dssp CHHHHHHHTTCS------CHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHGGGCSSH------------HHHHHH
T ss_pred cHHHHHHHHCCC------CHHHHHHHHHHHHHHHcCChHHHHHHHHcCCcHHHHHHHCCCCH------------HHHHHH
Confidence 377888888654 44579999999999997 89999999999999999999998776 999999
Q ss_pred HHHHHHhcC--ChhhHHHHHhCCChHHHHHHHhccccCCCccchhHHHHHHHHHHHHHhhcCchhhhHHHhcCCcHHHHH
Q 005044 137 AFALGLLAV--KPEHQQLIVDNGALSHLVNLLKRHMDSNCSRAVNSVIRRAADAITNLAHENSSIKTRVRMEGGIPPLVE 214 (717)
Q Consensus 137 ~~~L~~l~~--~~~~~~~~~~~~~i~~L~~lL~~~~~~~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ 214 (717)
+++|.||+. +++++..+++.|+++.|+.+|++..+. ++++.++++|++|+. ++.++..+.. ++++.|++
T Consensus 111 a~AL~nLa~~~~~~nk~~I~~~GaIp~LV~LL~s~~~~-------~~~e~aa~aL~nLS~-~~~~k~~I~~-~alp~Lv~ 181 (584)
T 3l6x_A 111 CGALKNISFGRDQDNKIAIKNCDGVPALVRLLRKARDM-------DLTEVITGTLWNLSS-HDSIKMEIVD-HALHALTD 181 (584)
T ss_dssp HHHHHHHTSSSCHHHHHHHHHTTHHHHHHHHHHHCCSH-------HHHHHHHHHHHHHTT-SGGGHHHHHH-HTHHHHHH
T ss_pred HHHHHHHHccCCHHHHHHHHHcCCHHHHHHHHcCCCCH-------HHHHHHHHHHHHHhC-CchhhHHHHh-ccHHHHHH
Confidence 999999994 599999999999999999999974332 889999999999998 6778888885 67999999
Q ss_pred hhc------------------CCCHHHHHHHHHHHHHhhccChhhHHHHHhc-CCHHHHHHHHcC------CCHHHHHHH
Q 005044 215 LLE------------------FTDTKVQRAAAGALRTLAFKNDENKNQIVEC-NALPTLILMLRS------EDSAIHYEA 269 (717)
Q Consensus 215 ll~------------------~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~-g~i~~L~~ll~~------~~~~v~~~a 269 (717)
++. ..++.++..|+++|.||+..+++.+..+.+. |+++.|+.++++ .+...+..|
T Consensus 182 LL~~p~sg~~~~~~~~~k~~~~~d~~V~~nAa~~L~NLs~~~~~~R~~i~~~~Gli~~LV~~L~~~~~~~~~~~~~~ena 261 (584)
T 3l6x_A 182 EVIIPHSGWEREPNEDCKPRHIEWESVLTNTAGCLRNVSSERSEARRKLRECDGLVDALIFIVQAEIGQKDSDSKLVENC 261 (584)
T ss_dssp HTHHHHHCCC----------CCCCHHHHHHHHHHHHHHTSSCHHHHHHHHHSTTHHHHHHHHHHHHHHTTCCSCHHHHHH
T ss_pred HHhcccccccccccccccccccccHHHHHHHHHHHHHHhcCCHHHHHHHHHcCCcHHHHHHHHHHhhcccCccHHHHHHH
Confidence 771 2357999999999999998777778888875 667899999874 466889999
Q ss_pred HHHHHHhhcCChHH-------------------------HHHHHHcCChHHHHHhhcc-CChHHHHHHHHHHHHHhcCCh
Q 005044 270 VGVIGNLVHSSPNI-------------------------KKEVLAAGALQPVIGLLSS-CCSESQREAALLLGQFAATDS 323 (717)
Q Consensus 270 ~~~L~~l~~~~~~~-------------------------~~~~~~~g~l~~L~~ll~~-~~~~~~~~a~~~L~~l~~~~~ 323 (717)
+++|.||+...... ...+.+.++++.|+.++.. .++.+++.|+++|.|++.+..
T Consensus 262 v~aL~NLs~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~Gve~L~~~~~v~~Ll~LL~~s~~~~v~E~Aa~AL~nL~ag~~ 341 (584)
T 3l6x_A 262 VCLLRNLSYQVHREIPQAERYQEAAPNVANNTGTSPARGYELLFQPEVVRIYISLLKESKTPAILEASAGAIQNLCAGRW 341 (584)
T ss_dssp HHHHHHHHTTHHHHSTTCCC--------------CCCCGGGGGGSHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHSSCS
T ss_pred HHHHHHhhccccccccchhhhhhhcccccccccccCchhHHHHhcccHHHHHHHHHccCCCHHHHHHHHHHHHHHHcCCc
Confidence 99999998652100 0111122346778889964 568999999999999987652
Q ss_pred ----hhHHHHHhcCChHHHHHHhcCCCHHHHHHHHHHHHHhhcCCCCchhhHhcCChHHHHHhhcCC--------ChhHH
Q 005044 324 ----DCKVHIVQRGAVRPLIEMLQSPDVQLREMSAFALGRLAQDMHNQAGIAHNGGLVPLLKLLDSK--------NGSLQ 391 (717)
Q Consensus 324 ----~~~~~l~~~~~l~~L~~~l~~~~~~v~~~a~~~L~~l~~~~~~~~~l~~~~~l~~L~~ll~~~--------~~~v~ 391 (717)
..+..+.+.++++.|+.+|.+++..++..|+++|+||+.+..++..+ ..|+++.|+++|.++ +.++.
T Consensus 342 ~~~~~~~~~v~~~~glp~Lv~LL~s~~~~v~~~A~~aL~nLs~~~~~~~~I-~~g~ip~LV~LL~~~~~~~~~~~s~~v~ 420 (584)
T 3l6x_A 342 TYGRYIRSALRQEKALSAIADLLTNEHERVVKAASGALRNLAVDARNKELI-GKHAIPNLVKNLPGGQQNSSWNFSEDTV 420 (584)
T ss_dssp HHHHHHHHHHTSHHHHHHHHHGGGCSCHHHHHHHHHHHHHHHTTCSCHHHH-HHHHHHHHHHTSSSSSCSGGGTCCHHHH
T ss_pred cccHHHHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHHHhCChhHHHHH-HhCCHHHHHHHhcCCcccccccchHHHH
Confidence 33445566889999999999999999999999999999988877655 779999999999775 46788
Q ss_pred HHHHHHHHhcc-CCCcchHHHHHhcCccccccchhHHhhhHHHHHHHHHHHHHHhhhchHHHHHHHHhhc--chhHHHHH
Q 005044 392 HNAAFALYGLA-DNEDNVADFIRVGGVQKLQDGEFIVQATKDCVAKTLKRLEEKIHGRVLNHLLYLMRVA--EKGVQRRV 468 (717)
Q Consensus 392 ~~a~~~L~~l~-~~~~~~~~l~~~~~i~~L~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~L~~ll~~~--~~~v~~~a 468 (717)
..|+++|.||+ .++++...+.+.| .++.|+.++.++ .+.++..|
T Consensus 421 ~~a~~tL~NL~a~~~~~~~~I~~~g---------------------------------~I~~Lv~LL~s~~~~~~v~k~A 467 (584)
T 3l6x_A 421 ISILNTINEVIAENLEAAKKLRETQ---------------------------------GIEKLVLINKSGNRSEKEVRAA 467 (584)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHTT---------------------------------HHHHHHHHHTCSSSCHHHHHHH
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHCC---------------------------------ChHHHHHHHhCCCCChHHHHHH
Confidence 99999999995 5677777777766 677799999986 88999999
Q ss_pred HHHHHhccCCCCCceeeecCCC
Q 005044 469 ALALAHLCSPDDQRTIFIDGGG 490 (717)
Q Consensus 469 ~~aL~~l~~~~~~~~~~~~~~~ 490 (717)
+++|+++..+.+.+..+.+.|.
T Consensus 468 a~vL~nl~~~~elr~~~kk~G~ 489 (584)
T 3l6x_A 468 ALVLQTIWGYKELRKPLEKEGW 489 (584)
T ss_dssp HHHHHHHHTSHHHHHHHHTTTC
T ss_pred HHHHHHHHcCHHHHHHHHHcCC
Confidence 9999999988775555444443
No 14
>1xm9_A Plakophilin 1; armadillo repeat, cell adhesion; 2.80A {Homo sapiens} SCOP: a.118.1.24
Probab=100.00 E-value=7.7e-34 Score=302.19 Aligned_cols=359 Identities=19% Similarity=0.255 Sum_probs=303.7
Q ss_pred ChHHHHHhhcCCCCCccccCCCccchHHHhHHHHHHHHhc-CChhhHHHHHhCCChHHHHHHHhccccCCCccchhHHHH
Q 005044 105 AVPALVKHLQAPPTSEADRNLKPFEHEVEKGSAFALGLLA-VKPEHQQLIVDNGALSHLVNLLKRHMDSNCSRAVNSVIR 183 (717)
Q Consensus 105 ~i~~L~~lL~~~~~~~~~~~~~~~~~~v~~~a~~~L~~l~-~~~~~~~~~~~~~~i~~L~~lL~~~~~~~~~~~~~~~~~ 183 (717)
.+|.|+.+|++++. +++..|+++|.+++ .++..+..+.+.|+++.|+.+|++.+. +++.
T Consensus 3 ~l~~lv~~L~s~~~------------~~q~~A~~~L~~l~~~~~~~~~~i~~~g~i~~Lv~lL~s~~~--------~~~~ 62 (457)
T 1xm9_A 3 TIPKAVQYLSSQDE------------KYQAIGAYYIQHTCFQDESAKQQVYQLGGICKLVDLLRSPNQ--------NVQQ 62 (457)
T ss_dssp CHHHHHHHHHSSCT------------HHHHHHHHHHHHHTSSCSSHHHHHHHTTHHHHHHHHTTSSCH--------HHHH
T ss_pred CHHHHHHHHCCCCH------------HHHHHHHHHHHHHHcCChHHHHHHHHcCCHHHHHHHHcCCCH--------HHHH
Confidence 58999999998877 99999999999999 677788899999999999999997655 8999
Q ss_pred HHHHHHHHHhhcCchhhhHHHhcCCcHHHHHhhc-CCCHHHHHHHHHHHHHhhccChhhHHHHHhcCCHHHHHHHHc---
Q 005044 184 RAADAITNLAHENSSIKTRVRMEGGIPPLVELLE-FTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLR--- 259 (717)
Q Consensus 184 ~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~-~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~g~i~~L~~ll~--- 259 (717)
.|+++|.||+..+++++..+++.|++|.|+++|. ++++++++.++++|+||+.+ ++++..+++ |+++.|++++.
T Consensus 63 ~A~~aL~nLa~~~~~~k~~i~~~G~i~~Lv~lL~~~~~~~~~~~a~~aL~nLa~~-~~~~~~i~~-g~i~~Lv~ll~~~~ 140 (457)
T 1xm9_A 63 AAAGALRNLVFRSTTNKLETRRQNGIREAVSLLRRTGNAEIQKQLTGLLWNLSST-DELKEELIA-DALPVLADRVIIPF 140 (457)
T ss_dssp HHHHHHHHHHSSCHHHHHHHHHTTCHHHHHHHHTTCCCHHHHHHHHHHHHHHHTS-SSTHHHHHH-HHHHHHHHHTTHHH
T ss_pred HHHHHHHHHhcCCHHHHHHHHHcCCHHHHHHHHhhCCCHHHHHHHHHHHHHHhcC-HHhHHHHHh-ccHHHHHHHHhccc
Confidence 9999999999977999999999999999999998 78999999999999999985 788888888 99999999993
Q ss_pred -----C--------CCHHHHHHHHHHHHHhhcCChHHHHHHHHc-CChHHHHHhhcc------CChHHHHHHHHHHHHHh
Q 005044 260 -----S--------EDSAIHYEAVGVIGNLVHSSPNIKKEVLAA-GALQPVIGLLSS------CCSESQREAALLLGQFA 319 (717)
Q Consensus 260 -----~--------~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~-g~l~~L~~ll~~------~~~~~~~~a~~~L~~l~ 319 (717)
+ .++++...|+|+|+|++.. +..+..+.+. |+++.|+.++.+ .+..+...++.+|.|++
T Consensus 141 s~~~~~~~~~~~e~~~~~v~~~a~~aL~nLs~~-~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~~~e~a~~~L~nLs 219 (457)
T 1xm9_A 141 SGWCDGNSNMSREVVDPEVFFNATGCLRNLSSA-DAGRQTMRNYSGLIDSLMAYVQNCVAASRCDDKSVENCMCVLHNLS 219 (457)
T ss_dssp HTCC---------CCCHHHHHHHHHHHHHHTTS-HHHHHHHTTSTTHHHHHHHHHHHHHHHTCTTCTTHHHHHHHHHHHT
T ss_pred cccccCccchhcccccHHHHHHHHHHHHHHccC-HHHHHHHHHcCCCHHHHHHHHHhhccccCCchHHHHHHHHHHHhcc
Confidence 2 2467788999999999977 7788888887 999999999986 35567888888899985
Q ss_pred cC--------------------------------------------------ChhhHHHHHhcCChHHHHHHhcC-CCHH
Q 005044 320 AT--------------------------------------------------DSDCKVHIVQRGAVRPLIEMLQS-PDVQ 348 (717)
Q Consensus 320 ~~--------------------------------------------------~~~~~~~l~~~~~l~~L~~~l~~-~~~~ 348 (717)
.. .+.....+.+.|+++.|+.+|.+ .++.
T Consensus 220 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~~L~~lL~~~~~~~ 299 (457)
T 1xm9_A 220 YRLDAEVPTRYRQLEYNARNAYTEKSSTGCFSNKSDKMMNNNYDCPLPEEETNPKGSGWLYHSDAIRTYLNLMGKSKKDA 299 (457)
T ss_dssp TTHHHHSCCHHHHHHHTC----------------------------CCCCCSSCCGGGGGGSHHHHHHHHHHHHHCCCHH
T ss_pred cchhccCcchhhhcccccccccccccccchhhccchhhhhccccCCccccccCchHHHHHhCcchHHHHHHHHhhcCCHH
Confidence 21 01112234566788999999975 5789
Q ss_pred HHHHHHHHHHHhhcCCCCc------hhhHhcCChHHHHHhhcCCChhHHHHHHHHHHhccCCCcchHHHHHhcCcccccc
Q 005044 349 LREMSAFALGRLAQDMHNQ------AGIAHNGGLVPLLKLLDSKNGSLQHNAAFALYGLADNEDNVADFIRVGGVQKLQD 422 (717)
Q Consensus 349 v~~~a~~~L~~l~~~~~~~------~~l~~~~~l~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~l~~~~~i~~L~~ 422 (717)
+++.|+|+|+||+.+.... ..+.+.|+++.|++++.+++.+++..|+++|.|++.+.+....+.
T Consensus 300 ~~e~a~~aL~nl~~~~~~~~~~~~~~~v~~~~~l~~Lv~LL~~~~~~v~~~A~~aL~nls~~~~~~~~i~---------- 369 (457)
T 1xm9_A 300 TLEACAGALQNLTASKGLMSSGMSQLIGLKEKGLPQIARLLQSGNSDVVRSGASLLSNMSRHPLLHRVMG---------- 369 (457)
T ss_dssp HHHHHHHHHHHHTTCSSSHHHHHHHHHHTTSCCHHHHHHHTTCSCHHHHHHHHHHHHHHHTSGGGHHHHH----------
T ss_pred HHHHHHHHHHHhccCcCcchHHHHHHHHHHcCCchHHHHHHhCCCHhHHHHHHHHHHHHhcCHHHHHHHH----------
Confidence 9999999999999865442 223467999999999999999999999999999998765543322
Q ss_pred chhHHhhhHHHHHHHHHHHHHHhhhchHHHHHHHHhhcch------hHHHHHHHHHHhccCCCC-CceeeecCCCHHHHH
Q 005044 423 GEFIVQATKDCVAKTLKRLEEKIHGRVLNHLLYLMRVAEK------GVQRRVALALAHLCSPDD-QRTIFIDGGGLELLL 495 (717)
Q Consensus 423 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~L~~ll~~~~~------~v~~~a~~aL~~l~~~~~-~~~~~~~~~~l~~L~ 495 (717)
.++++.|+++|..+++ ++...++++|+++..+.. ....+.+.|+++.|+
T Consensus 370 ------------------------~~~i~~Lv~lL~~~~~~~~~~~~v~~~~l~~l~ni~~~~~~~~~~i~~~g~l~~L~ 425 (457)
T 1xm9_A 370 ------------------------NQVFPEVTRLLTSHTGNTSNSEDILSSACYTVRNLMASQPQLAKQYFSSSMLNNII 425 (457)
T ss_dssp ------------------------HHTHHHHHHTTTSCCSCSTTHHHHHHHHHHHHHHHHTTCTHHHHHHCCHHHHHHHH
T ss_pred ------------------------HhhhHHHHHhccCCCCCCCCcHHHHHHHHHHHHHHHhcCHHHHHHHHHcCCHHHHH
Confidence 2367889999988743 688899999999976544 777788999999999
Q ss_pred HHhcCC-CchhhhhhHHHHHHhhhcc
Q 005044 496 GLLGST-NPKQQLDGAVALFKLANKA 520 (717)
Q Consensus 496 ~ll~~~-~~~v~~~a~~~l~~L~~~~ 520 (717)
+++.++ ++.+++.|+++|.++..+.
T Consensus 426 ~L~~~~~~~~i~~~A~~~L~~~~~~~ 451 (457)
T 1xm9_A 426 NLCRSSASPKAAEAARLLLSDMWSSK 451 (457)
T ss_dssp HHHHCTTCHHHHHHHHHHHHTTSSST
T ss_pred HHHcCCCcHHHHHHHHHHHHHHHcch
Confidence 999998 9999999999999998763
No 15
>2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio}
Probab=100.00 E-value=6.3e-34 Score=322.40 Aligned_cols=434 Identities=22% Similarity=0.228 Sum_probs=365.6
Q ss_pred HHHHHhhhhhccccchHHHHHHHHHHHHHHHHhhcChhhHHHHHhCCChHHHHHhhcCCCCCccccCCCccchHHHhHHH
Q 005044 58 EVSAQVNVLNTTFSWLEADRAAAKRATHVLAELAKNEEVVNWIVEGGAVPALVKHLQAPPTSEADRNLKPFEHEVEKGSA 137 (717)
Q Consensus 58 ~i~~l~~~L~~~~~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~g~i~~L~~lL~~~~~~~~~~~~~~~~~~v~~~a~ 137 (717)
.++.++..|... .+..++..|+++|.+++.+++++..+.+.|+++.|+.+|++.+. .++..|+
T Consensus 193 ~i~~Lv~~L~~~-----~d~~vr~~Aa~aL~~Ls~~~~~~~~i~~~g~I~~Lv~lL~~~~~------------~v~~~A~ 255 (780)
T 2z6g_A 193 MVSAIVRTMQNT-----NDVETARCTSGTLHNLSHHREGLLAIFKSGGIPALVNMLGSPVD------------SVLFHAI 255 (780)
T ss_dssp HHHHHHHHHHHC-----CCHHHHHHHHHHHHHHHTSHHHHHHHHHTTHHHHHHHHTTCSCH------------HHHHHHH
T ss_pred hHHHHHHHHcCC-----CCHHHHHHHHHHHHHHhCCchhHHHHHHcCCHHHHHHHHcCCCH------------HHHHHHH
Confidence 344455554422 24557999999999999988888899999999999999988765 9999999
Q ss_pred HHHHHhc-CChhhHHHHHhCCChHHHHHHHhccccCCCccchhHHHHHHHHHHHHHhhcCchhhhHHHhcCCcHHHHHhh
Q 005044 138 FALGLLA-VKPEHQQLIVDNGALSHLVNLLKRHMDSNCSRAVNSVIRRAADAITNLAHENSSIKTRVRMEGGIPPLVELL 216 (717)
Q Consensus 138 ~~L~~l~-~~~~~~~~~~~~~~i~~L~~lL~~~~~~~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll 216 (717)
++|.+|+ ..++.+..+.+.|+++.|+.+|++.+. .++..++.+|.+++..+++.+..+...|+++.|+.++
T Consensus 256 ~aL~nLa~~~~~~~~~v~~~g~v~~Lv~lL~~~~~--------~v~~~a~~aL~~La~~~~e~~~~i~~~~~i~~Lv~lL 327 (780)
T 2z6g_A 256 TTLHNLLLHQEGAKMAVRLAGGLQKMVALLNKTNV--------KFLAITTDCLQILAYGNQESKLIILASGGPQALVNIM 327 (780)
T ss_dssp HHHHHHHHHSTTHHHHHHHTTHHHHHHHGGGCCCH--------HHHHHHHHHHHHHHTTCHHHHHHHHTTTHHHHHHHHH
T ss_pred HHHHHHhCCChhhHHHHHHcCCHHHHHHHHhcCCH--------HHHHHHHHHHHHHhcCChHHHHHHHHcCCHHHHHHHH
Confidence 9999999 667888888899999999999987544 7889999999999988888898899999999999999
Q ss_pred cCCC-HHHHHHHHHHHHHhhccChhhHHHHHhcCCHHHHHHHHcCCCHHHHHHHHHHHHHhhcCChHHHHHHHHcCChHH
Q 005044 217 EFTD-TKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSEDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQP 295 (717)
Q Consensus 217 ~~~~-~~v~~~a~~~L~~L~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~l~~ 295 (717)
++.+ ...+..++.+|.+|+. .+.++..+++.|+++.|+.++.+.+..++..++++|.+++...... ....++++.
T Consensus 328 ~~~~~~~~~~~a~~aL~~Ls~-~~~~~~~i~~~g~l~~Ll~lL~~~~~~~~~~a~~~L~~L~~~~~~~---~~~~~~i~~ 403 (780)
T 2z6g_A 328 RTYTYEKLLWTTSRVLKVLSV-CSSNKPAIVEAGGMQALGLHLTDPSQRLVQNCLWTLRNLSDAATKQ---EGMEGLLGT 403 (780)
T ss_dssp TTCCCHHHHHHHHHHHHHHHT-STTHHHHHHHTTHHHHHGGGTTCSCHHHHHHHHHHHHHHHTTCTTC---SCCHHHHHH
T ss_pred hcCCHHHHHHHHHHHHHHhhc-ChHHHHHHHHhchHHHHHHHHcCCchHHHHHHHHHHHHHhccchhh---hhhhhHHHH
Confidence 8765 4566788999999996 6788889999999999999999999999999999999998654321 112457899
Q ss_pred HHHhhccCChHHHHHHHHHHHHHhcCChhhHHHHHhcCChHHHHHHhcC-C-CHHHHHHHHHHHHHhhcCCCC----chh
Q 005044 296 VIGLLSSCCSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQS-P-DVQLREMSAFALGRLAQDMHN----QAG 369 (717)
Q Consensus 296 L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~l~~~~~l~~L~~~l~~-~-~~~v~~~a~~~L~~l~~~~~~----~~~ 369 (717)
|++++.+.++.++..|+++|++++...+..+..+.+.|+++.|+.+|.+ . ...++..|+++|++|+..... +..
T Consensus 404 Lv~lL~~~d~~vr~~A~~aL~~L~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~v~~~Al~aL~nL~~~~~~~~~~~~~ 483 (780)
T 2z6g_A 404 LVQLLGSDDINVVTCAAGILSNLTCNNYKNKMMVCQVGGIEALVRTVLRAGDREDITEPAICALRHLTSRHQDAEMAQNA 483 (780)
T ss_dssp HHHHTTCSCHHHHHHHHHHHHHHTSSCHHHHHHHHTTTHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSSTTHHHHHHH
T ss_pred HHHHHcCCCHHHHHHHHHHHHHHHhCCHHHHHHHHHCCCHHHHHHHHHccCCHHHHHHHHHHHHHHHHhcCchHHHHHHH
Confidence 9999999999999999999999998878888889999999999999976 3 358999999999999875433 346
Q ss_pred hHhcCChHHHHHhhcCCCh-hHHHHHHHHHHhccCCCcchHHHHHhcCccccccchhHHh--------------------
Q 005044 370 IAHNGGLVPLLKLLDSKNG-SLQHNAAFALYGLADNEDNVADFIRVGGVQKLQDGEFIVQ-------------------- 428 (717)
Q Consensus 370 l~~~~~l~~L~~ll~~~~~-~v~~~a~~~L~~l~~~~~~~~~l~~~~~i~~L~~~~~~~~-------------------- 428 (717)
+...++++.|++++.+.+. .++..++++|.||+.++.+...+.+.|+++.|++......
T Consensus 484 v~~~~~l~~L~~lL~~~~~~~v~~~A~~aL~nLa~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~aa~al~nq~~~~~~ 563 (780)
T 2z6g_A 484 VRLHYGLPVVVKLLHPPSHWPLIKATVGLIRNLALCPANHAPLREQGAIPRLVQLLVRAHQDTQRRTSMGGTQQQFVEGV 563 (780)
T ss_dssp HHHTTCHHHHHHTTSTTCCHHHHHHHHHHHHHHHSSHHHHHHHHHTTHHHHHHHHHHHHHHHHHHTTC------CCSTTC
T ss_pred HHHcCCHHHHHHHhcCCChHHHHHHHHHHHHHHhcCHHHHHHHHHCCCHHHHHHHHHhcchhHHHHHhhccccchhhccc
Confidence 7888999999999988764 9999999999999998888888899999988887543211
Q ss_pred ---hhHHHHHHHHHHH-------HHHhhhchHHHHHHHHhhcchhHHHHHHHHHHhccCCCCCceeeecCCCHHHHHHHh
Q 005044 429 ---ATKDCVAKTLKRL-------EEKIHGRVLNHLLYLMRVAEKGVQRRVALALAHLCSPDDQRTIFIDGGGLELLLGLL 498 (717)
Q Consensus 429 ---~~~~~~~~~~~~l-------~~~~~~~~~~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~~~~~~l~~L~~ll 498 (717)
.....+..++.++ ......++++.|+.++.++++.++..++.+|++++..++.+..+.+.|+++.|.+++
T Consensus 564 ~~~~v~~~a~~aL~~La~~~~~~~~l~~~~~i~~Lv~lL~~~~~~v~~~a~~aL~~L~~~~~~~~~i~~~g~i~~L~~Ll 643 (780)
T 2z6g_A 564 RMEEIVEACTGALHILARDIHNRIVIRGLNTIPLFVQLLYSPIENIQRVAAGVLCELAQDKEAAEAIEAEGATAPLTELL 643 (780)
T ss_dssp CHHHHHHHHHHHHHHHTTSHHHHHHHHHTCCHHHHHHGGGCSCHHHHHHHHHHHHHHHTSHHHHHHHHHTTCHHHHHHGG
T ss_pred ChHHHHHHHHHHHHHHhcChhhHHHHHHCCcHHHHHHHHcCCCHHHHHHHHHHHHHHhcCHHHHHHHHHCCCHHHHHHHH
Confidence 1122222333332 124478899999999999999999999999999987777777888999999999999
Q ss_pred cCCCchhhhhhHHHHHHhhhcc
Q 005044 499 GSTNPKQQLDGAVALFKLANKA 520 (717)
Q Consensus 499 ~~~~~~v~~~a~~~l~~L~~~~ 520 (717)
.++++.+|..|+++|.+++.+.
T Consensus 644 ~~~~~~Vr~~A~~aL~~l~~~~ 665 (780)
T 2z6g_A 644 HSRNEGVATYAAAVLFRMSEDK 665 (780)
T ss_dssp GCSCHHHHHHHHHHHHHHHTTS
T ss_pred cCCCHHHHHHHHHHHHHHHcCC
Confidence 9999999999999999999864
No 16
>3nmz_A APC variant protein; protein-protein complex, armadillo repeats, cell adhesion-CE complex; 3.01A {Homo sapiens}
Probab=100.00 E-value=3e-34 Score=298.80 Aligned_cols=367 Identities=20% Similarity=0.217 Sum_probs=295.7
Q ss_pred ChHHHHHhhcCCCCCccccCCCccchHHHhHHHHHHHHhcCChhhHHHHHhCCChHHHHHHHhccccCC----CccchhH
Q 005044 105 AVPALVKHLQAPPTSEADRNLKPFEHEVEKGSAFALGLLAVKPEHQQLIVDNGALSHLVNLLKRHMDSN----CSRAVNS 180 (717)
Q Consensus 105 ~i~~L~~lL~~~~~~~~~~~~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~i~~L~~lL~~~~~~~----~~~~~~~ 180 (717)
.++.|+..+.+.+. . ...+.|..+..+++.+..+.+.|++|.|+++|+..+.+. ......+
T Consensus 33 ~~~~l~~~~~~~~~------------~---~~~~~ll~~~~~~~~~~~~~~~g~~p~lv~~l~~~~~~~~~~~~~~~~~~ 97 (458)
T 3nmz_A 33 MVYSLLSMLGTHDK------------D---DMSRTLLAMSSSQDSCISMRQSGCLPLLIQLLHGNDKDSVLLGNSRGSKE 97 (458)
T ss_dssp ------------CC------------H---HHHHHHHHHHSSTTHHHHHHHHTCHHHHHHHHTCTTCCSCC---CCCCHH
T ss_pred HHHHHHHHhcCCCH------------H---HHHHHHHHHHcCCcHHHHHHHCCCHHHHHHHHhcccccccccccccCCHH
Confidence 46777777766555 3 388889999988899999999999999999999754310 0001128
Q ss_pred HHHHHHHHHHHHhhcCchhhhHHHhcCCc----------HHHHHhhcCCC--HH-----HHH-------HHHHHHHHhhc
Q 005044 181 VIRRAADAITNLAHENSSIKTRVRMEGGI----------PPLVELLEFTD--TK-----VQR-------AAAGALRTLAF 236 (717)
Q Consensus 181 ~~~~a~~~L~~l~~~~~~~~~~~~~~~~i----------~~L~~ll~~~~--~~-----v~~-------~a~~~L~~L~~ 236 (717)
++..|+|+|.|++...++......+.+.+ +.+++++.+.. .+ +++ .|+|+|.|++.
T Consensus 98 ~~~~a~~al~ni~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~qAv~aL~nls~ 177 (458)
T 3nmz_A 98 ARARASAALHNIIHSQPDDKRGRREIRVLHLLEQIRAYCETCWEWQEAHEPGMDQDKNPMPAPVEHQICPAVCVLMKLSF 177 (458)
T ss_dssp HHHHHHHHHHHHHHHSCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTSSSSCCCSCC--CCCTTTTHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHccCcchhHHHHHHHHHHHHHHhhhhhHHHHHHHHhhccccccccCCccchhhHHHHHHHHHHHHhcC
Confidence 99999999999999888777666666666 55666665542 11 444 89999999986
Q ss_pred cChhhHHHHHhcCCHHHHHHHHcC-----------CCHHHHHHHHHHHHHhhcCChHHHHHHHHc-CChHHHHHhhccCC
Q 005044 237 KNDENKNQIVECNALPTLILMLRS-----------EDSAIHYEAVGVIGNLVHSSPNIKKEVLAA-GALQPVIGLLSSCC 304 (717)
Q Consensus 237 ~~~~~~~~~~~~g~i~~L~~ll~~-----------~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~-g~l~~L~~ll~~~~ 304 (717)
+++++..+.+.|+++.|+.+|.. .++.++..|+|+|.||+.+++..+..+... |+++.|+.+|.+++
T Consensus 178 -~~e~R~~i~~~G~l~~Lv~LL~~~~~~~~~~~~~~~~~l~~~Aa~aL~nLa~~~~~~k~~i~~~~GaIp~LV~LL~s~~ 256 (458)
T 3nmz_A 178 -DEEHRHAMNELGGLQAIAELLQVDCEMYGLTNDHYSITLRRYAGMALTNLTFGDVANKATLCSMKGCMRALVAQLKSES 256 (458)
T ss_dssp -SHHHHHHHHHTTHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHCHHHHHHHHHGGGCSC
T ss_pred -CHHHHHHHHHCCCHHHHHHHHhhhhcccccccCCCCHHHHHHHHHHHHHHhCCCcccHHHHHHcCCcHHHHHHHHhCCC
Confidence 69999999999999999999952 246789999999999998877676666554 55999999999999
Q ss_pred hHHHHHHHHHHHHHhcC-ChhhHHHHHhcCChHHHHHHh-cCCCHHHHHHHHHHHHHhhc-CCCCchhhH-hcCChHHHH
Q 005044 305 SESQREAALLLGQFAAT-DSDCKVHIVQRGAVRPLIEML-QSPDVQLREMSAFALGRLAQ-DMHNQAGIA-HNGGLVPLL 380 (717)
Q Consensus 305 ~~~~~~a~~~L~~l~~~-~~~~~~~l~~~~~l~~L~~~l-~~~~~~v~~~a~~~L~~l~~-~~~~~~~l~-~~~~l~~L~ 380 (717)
++++..|+++|+|++.. ++.++..+.+.|+++.|+++| .+.++.+++.++.+|+||+. ...++..+. ..|+++.|+
T Consensus 257 ~~v~~~A~~aL~nLs~~~~~~~k~~I~~~GaI~~LV~lLl~s~~~~v~~~A~~aL~nLs~~~~~nk~~I~~~~Gal~~Lv 336 (458)
T 3nmz_A 257 EDLQQVIASVLRNLSWRADVNSKKTLREVGSVKALMECALEVKKESTLKSVLSALWNLSAHCTENKADICAVDGALAFLV 336 (458)
T ss_dssp HHHHHHHHHHHHHHTSSCCHHHHHHHHHTTHHHHHHHHHTTCCSHHHHHHHHHHHHHHHHHCHHHHHHHHHSTTHHHHHH
T ss_pred HHHHHHHHHHHHHHhcCCCHHHHHHHHHcCCHHHHHHHHhcCCCHHHHHHHHHHHHHHccCCHHHHHHHHHhcCcHHHHH
Confidence 99999999999999864 567888999999999999975 55789999999999999998 657777777 789999999
Q ss_pred HhhcCCCh----hHHHHHHHHHHhccC----CCcchHHHHHhcCccccccchhHHhhhHHHHHHHHHHHHHHhhhchHHH
Q 005044 381 KLLDSKNG----SLQHNAAFALYGLAD----NEDNVADFIRVGGVQKLQDGEFIVQATKDCVAKTLKRLEEKIHGRVLNH 452 (717)
Q Consensus 381 ~ll~~~~~----~v~~~a~~~L~~l~~----~~~~~~~l~~~~~i~~L~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 452 (717)
+++.+.+. .++..|+++|.||+. +++++..+.+.| +++.
T Consensus 337 ~LL~~~~~~~~~~v~~~A~~aL~nLs~~~a~~~~~~~~i~~~G---------------------------------~i~~ 383 (458)
T 3nmz_A 337 GTLTYRSQTNTLAIIESGGGILRNVSSLIATNEDHRQILRENN---------------------------------CLQT 383 (458)
T ss_dssp HHTTCCCSSSTTHHHHHHHHHHHHHHHHHTTCHHHHHHHHHTT---------------------------------HHHH
T ss_pred HHhcCCCCcchHHHHHHHHHHHHHHHhcccCCHHHHHHHHHcc---------------------------------cHHH
Confidence 99987654 499999999999984 666766666665 6778
Q ss_pred HHHHHhhcchhHHHHHHHHHHhccC-CCCCceeeecCCCHHHHHHHhcCCCchhhhhhHHHHHHhhhcc
Q 005044 453 LLYLMRVAEKGVQRRVALALAHLCS-PDDQRTIFIDGGGLELLLGLLGSTNPKQQLDGAVALFKLANKA 520 (717)
Q Consensus 453 L~~ll~~~~~~v~~~a~~aL~~l~~-~~~~~~~~~~~~~l~~L~~ll~~~~~~v~~~a~~~l~~L~~~~ 520 (717)
|+.+|.+++..++..|+++|.|++. +++++..+.+.|+++.|+.++.++++.+++.|+++|.||+.+.
T Consensus 384 Lv~LL~~~~~~v~~~A~~aL~nLa~~~~~~~~~i~~~G~I~~Lv~LL~s~~~~v~~~Aa~AL~nL~~~~ 452 (458)
T 3nmz_A 384 LLQHLKSHSLTIVSNACGTLWNLSARNPKDQEALWDMGAVSMLKNLIHSKHKMIAMGSAAALRNLMANR 452 (458)
T ss_dssp HHHHSSCSCHHHHHHHHHHHHHHHSSCHHHHHHHHHHTHHHHHHTTTTCSSHHHHHHHHHHHHHHHTCC
T ss_pred HHHHHcCCChHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHcCC
Confidence 9999999999999999999999985 4567888899999999999999999999999999999999763
No 17
>1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A
Probab=100.00 E-value=2.4e-33 Score=307.81 Aligned_cols=434 Identities=21% Similarity=0.245 Sum_probs=355.6
Q ss_pred HHHHHHHhhhhhccccchHHHHHHHHHHHHHHHHhhcChhhHHHHHhC-CChHHHHHhhcCC-CCCccccCCCccchHHH
Q 005044 56 LSEVSAQVNVLNTTFSWLEADRAAAKRATHVLAELAKNEEVVNWIVEG-GAVPALVKHLQAP-PTSEADRNLKPFEHEVE 133 (717)
Q Consensus 56 ~~~i~~l~~~L~~~~~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~-g~i~~L~~lL~~~-~~~~~~~~~~~~~~~v~ 133 (717)
...++.++++|.+. +..++..|+..|.+++.++..+..++.. |+++.|+++|..+ +. .++
T Consensus 16 ~~~i~~Lv~lL~~~------~~~v~~~A~~~L~~l~~~~~~~~~~~~~~~~i~~Lv~~L~~~~~~------------~~~ 77 (529)
T 1jdh_A 16 TRAIPELTKLLNDE------DQVVVNKAAVMVHQLSKKEASRHAIMRSPQMVSAIVRTMQNTNDV------------ETA 77 (529)
T ss_dssp -CHHHHHHHHHTCS------CHHHHHHHHHHHHHHHTSHHHHHHHHTCHHHHHHHHHHHHHCCCH------------HHH
T ss_pred HhhHHHHHHHhCCC------CHHHHHHHHHHHHHHHcCCccHHHHHhCcchHHHHHHHHhcCCCH------------HHH
Confidence 33577777777643 5567999999999999987777777764 8999999999754 33 899
Q ss_pred hHHHHHHHHhcCChhhHHHHHhCCChHHHHHHHhccccCCCccchhHHHHHHHHHHHHHhhcCchhhhHHHhcCCcHHHH
Q 005044 134 KGSAFALGLLAVKPEHQQLIVDNGALSHLVNLLKRHMDSNCSRAVNSVIRRAADAITNLAHENSSIKTRVRMEGGIPPLV 213 (717)
Q Consensus 134 ~~a~~~L~~l~~~~~~~~~~~~~~~i~~L~~lL~~~~~~~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~ 213 (717)
..++.+|.+++..++++..+.+.|+++.|+.+|++.+. .++..++++|.+++..++..+..+.+.|+++.|+
T Consensus 78 ~~a~~~L~~ls~~~~~~~~i~~~g~i~~L~~lL~~~~~--------~v~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~ 149 (529)
T 1jdh_A 78 RCTAGTLHNLSHHREGLLAIFKSGGIPALVKMLGSPVD--------SVLFYAITTLHNLLLHQEGAKMAVRLAGGLQKMV 149 (529)
T ss_dssp HHHHHHHHHHTTSHHHHHHHHHTTHHHHHHHHTTCSCH--------HHHHHHHHHHHHHHHHCTTHHHHHHHHTHHHHHH
T ss_pred HHHHHHHHHHHcCchhHHHHHHcCCHHHHHHHHcCCCH--------HHHHHHHHHHHHHhcCCcchHHHHHHcCCHHHHH
Confidence 99999999999778899999999999999999988765 8999999999999998788888888999999999
Q ss_pred HhhcCCCHHHHHHHHHHHHHhhccChhhHHHHHhcCCHHHHHHHHcCCC-HHHHHHHHHHHHHhhcCChHHHHHHHHcCC
Q 005044 214 ELLEFTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSED-SAIHYEAVGVIGNLVHSSPNIKKEVLAAGA 292 (717)
Q Consensus 214 ~ll~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~g~i~~L~~ll~~~~-~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~ 292 (717)
.++.++++.++..++.+|.+++.++++++..+.+.|+++.|+.++++++ ...+..++.+|.+++.. +..+..+.+.|+
T Consensus 150 ~ll~~~~~~~~~~~~~~L~~la~~~~~~~~~i~~~~~i~~L~~ll~~~~~~~~~~~a~~~L~~l~~~-~~~~~~~~~~g~ 228 (529)
T 1jdh_A 150 ALLNKTNVKFLAITTDCLQILAYGNQESKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSVC-SSNKPAIVEAGG 228 (529)
T ss_dssp HGGGCCCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTS-TTHHHHHHHTTH
T ss_pred HHHhcCCHHHHHHHHHHHHHHHhCCHHHHHHHHHCCCHHHHHHHHHhCChHHHHHHHHHHHHHHhcC-cccHHHHHHCCC
Confidence 9999999999999999999999888899999999999999999998764 45667789999999864 566788899999
Q ss_pred hHHHHHhhccCChHHHHHHHHHHHHHhcCChhhHHHHHhcCChHHHHHHhcCCCHHHHHHHHHHHHHhhcCC-CCchhhH
Q 005044 293 LQPVIGLLSSCCSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQSPDVQLREMSAFALGRLAQDM-HNQAGIA 371 (717)
Q Consensus 293 l~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~l~~~~~l~~L~~~l~~~~~~v~~~a~~~L~~l~~~~-~~~~~l~ 371 (717)
++.|+.++.+.+++++..++++|.+++...+.. ....++++.|++++.++++.++..++++|++|+.+. .++..+.
T Consensus 229 ~~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~---~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~ 305 (529)
T 1jdh_A 229 MQALGLHLTDPSQRLVQNCLWTLRNLSDAATKQ---EGMEGLLGTLVQLLGSDDINVVTCAAGILSNLTCNNYKNKMMVC 305 (529)
T ss_dssp HHHHHTTTTSSCHHHHHHHHHHHHHHHTTCTTC---SCCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTTTCHHHHHHHH
T ss_pred HHHHHHHHhCCChHHHHHHHHHHHHHhcCChhh---HHHHhHHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCHHHHHHHH
Confidence 999999999999999999999999998654332 123478999999999999999999999999999865 4677888
Q ss_pred hcCChHHHHHhhcC--CChhHHHHHHHHHHhccCCC-c---chHHHHHhcCccccccchhHHh--hhHHHHHHHHHHH--
Q 005044 372 HNGGLVPLLKLLDS--KNGSLQHNAAFALYGLADNE-D---NVADFIRVGGVQKLQDGEFIVQ--ATKDCVAKTLKRL-- 441 (717)
Q Consensus 372 ~~~~l~~L~~ll~~--~~~~v~~~a~~~L~~l~~~~-~---~~~~l~~~~~i~~L~~~~~~~~--~~~~~~~~~~~~l-- 441 (717)
+.|+++.|++++.+ .++.++..++.+|.||+... + .+..+.+.|+++.|.+...... ..+.....++.++
T Consensus 306 ~~~~v~~L~~ll~~~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~i~~~~~i~~L~~lL~~~~~~~v~~~a~~~l~nl~~ 385 (529)
T 1jdh_A 306 QVGGIEALVRTVLRAGDREDITEPAICALRHLTSRHQEAEMAQNAVRLHYGLPVVVKLLHPPSHWPLIKATVGLIRNLAL 385 (529)
T ss_dssp HTTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSSSTTHHHHHHHHHHTTCHHHHHHTTSTTCCHHHHHHHHHHHHHHTT
T ss_pred HcCChHHHHHHHHccCCHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHcCChhHHHHHhccccchHHHHHHHHHHHHHhc
Confidence 99999999999965 34799999999999998753 2 3567888899998877544322 2333333344443
Q ss_pred -----HHHhhhchHHHHHHHHhhcchhHHHHHHHHHH----------------------hccCCCCCceeeecCCCHHHH
Q 005044 442 -----EEKIHGRVLNHLLYLMRVAEKGVQRRVALALA----------------------HLCSPDDQRTIFIDGGGLELL 494 (717)
Q Consensus 442 -----~~~~~~~~~~~L~~ll~~~~~~v~~~a~~aL~----------------------~l~~~~~~~~~~~~~~~l~~L 494 (717)
....+.++++.|+.++.++++++|..++|++. +++...+++..+.+.|+++.|
T Consensus 386 ~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~l~n~~~~~~~~~~~i~~~~~~al~~L~~~~~~~~~l~~~~~v~~l 465 (529)
T 1jdh_A 386 CPANHAPLREQGAIPRLVQLLVRAHQDTQRRTSMGGTQQQFVEGVRMEEIVEGCTGALHILARDVHNRIVIRGLNTIPLF 465 (529)
T ss_dssp SGGGHHHHHHTTHHHHHHHHHHHHHHHHC-----------CBTTBCHHHHHHHHHHHHHHHTTSHHHHHHHHHTTCHHHH
T ss_pred ChhhhHHHHHcCCHHHHHHHHHHHhHHHHHHHhcccCchhhhccccHHHHHHHHHHHHHHHhcCchHHHHHhccCCccHH
Confidence 23456789999999999988888876665554 465555555667889999999
Q ss_pred HHHhcCCCchhhhhhHHHHHHhhhc
Q 005044 495 LGLLGSTNPKQQLDGAVALFKLANK 519 (717)
Q Consensus 495 ~~ll~~~~~~v~~~a~~~l~~L~~~ 519 (717)
+.++.+++++++..|+++|.+++.+
T Consensus 466 ~~ll~~~~~~v~~~a~~~l~~l~~~ 490 (529)
T 1jdh_A 466 VQLLYSPIENIQRVAAGVLCELAQD 490 (529)
T ss_dssp HHGGGCSCHHHHHHHHHHHHHHTTS
T ss_pred HHHHcCCchHHHHHHHHHHHHHhcC
Confidence 9999999999999999999999854
No 18
>2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A
Probab=100.00 E-value=2.8e-33 Score=300.60 Aligned_cols=401 Identities=16% Similarity=0.214 Sum_probs=339.7
Q ss_pred HHHHhhhhhccccchHHHHHHHHHHHHHHHHhhc--ChhhHHHHHhC-CChHHHHHhhcCC-CCCccccCCCccchHHHh
Q 005044 59 VSAQVNVLNTTFSWLEADRAAAKRATHVLAELAK--NEEVVNWIVEG-GAVPALVKHLQAP-PTSEADRNLKPFEHEVEK 134 (717)
Q Consensus 59 i~~l~~~L~~~~~~~~~~~~~~~~a~~~L~~l~~--~~~~~~~~~~~-g~i~~L~~lL~~~-~~~~~~~~~~~~~~~v~~ 134 (717)
++.+++.|.+. +..++..|+..|..+.. .......+++. |++|.|+++|+++ +. .++.
T Consensus 22 l~~l~~~l~s~------~~~~r~~A~~~L~~l~~~~~~~~~~~~~~~~~~i~~L~~~L~~~~~~------------~v~~ 83 (450)
T 2jdq_A 22 TSDMIEMIFSK------SPEQQLSATQKFRKLLSKEPNPPIDEVISTPGVVARFVEFLKRKENC------------TLQF 83 (450)
T ss_dssp CHHHHHHHHSS------CHHHHHHHHHHHHHHHHSSSSCCHHHHHTSTTHHHHHHHHHTCTTCH------------HHHH
T ss_pred HHHHHHHhcCC------CHHHHHHHHHHHHHHhcCCCCCcHHHHHHcCCcHHHHHHHHCCCCCH------------HHHH
Confidence 66677766543 45579999999999754 22233456676 9999999999887 44 9999
Q ss_pred HHHHHHHHhc-CChhhHHHHHhCCChHHHHHHHhccccCCCccchhHHHHHHHHHHHHHhhcCchhhhHHHhcCCcHHHH
Q 005044 135 GSAFALGLLA-VKPEHQQLIVDNGALSHLVNLLKRHMDSNCSRAVNSVIRRAADAITNLAHENSSIKTRVRMEGGIPPLV 213 (717)
Q Consensus 135 ~a~~~L~~l~-~~~~~~~~~~~~~~i~~L~~lL~~~~~~~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~ 213 (717)
.|+++|.+++ .+++....+.+.|+++.|+.+|++.+. .++..|+++|.+++...+..+..+...|+++.|+
T Consensus 84 ~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~lL~~~~~--------~vr~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~ 155 (450)
T 2jdq_A 84 ESAWVLTNIASGNSLQTRIVIQAGAVPIFIELLSSEFE--------DVQEQAVWALGNIAGDSTMCRDYVLDCNILPPLL 155 (450)
T ss_dssp HHHHHHHHHHSSCHHHHHHHHHTTHHHHHHHHTTCSCH--------HHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHhcCCHHHHHHHHhCCCHHHHHHHHcCCCH--------HHHHHHHHHHHHHccCCHHHHHHHHHCCCHHHHH
Confidence 9999999999 677888888899999999999998655 8999999999999998888888888899999999
Q ss_pred HhhcC-CCHHHHHHHHHHHHHhhccC-hhhHHHHHhcCCHHHHHHHHcCCCHHHHHHHHHHHHHhhcCChHHHHHHHHcC
Q 005044 214 ELLEF-TDTKVQRAAAGALRTLAFKN-DENKNQIVECNALPTLILMLRSEDSAIHYEAVGVIGNLVHSSPNIKKEVLAAG 291 (717)
Q Consensus 214 ~ll~~-~~~~v~~~a~~~L~~L~~~~-~~~~~~~~~~g~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g 291 (717)
.++.+ +++.++..++++|.+++.+. +.....+. .++++.|+.++.++++.++..++++|.+++...+.....+...|
T Consensus 156 ~~l~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~-~~~l~~L~~~l~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~ 234 (450)
T 2jdq_A 156 QLFSKQNRLTMTRNAVWALSNLCRGKSPPPEFAKV-SPCLNVLSWLLFVSDTDVLADACWALSYLSDGPNDKIQAVIDAG 234 (450)
T ss_dssp HHTTSCCCHHHHHHHHHHHHHHHCCSSSCCCGGGT-GGGHHHHHHHTTCCCHHHHHHHHHHHHHHTSSSHHHHHHHHHTT
T ss_pred HHhcCCCCHHHHHHHHHHHHHHhCCCCCCCCHHHH-HHHHHHHHHHHccCCHHHHHHHHHHHHHHHCCCcHHHHHHHHcC
Confidence 99985 78999999999999999754 33333333 68999999999999999999999999999987777778888899
Q ss_pred ChHHHHHhhccCChHHHHHHHHHHHHHhcCChhhHHHHHhcCChHHHHHHhcCCCHHHHHHHHHHHHHhhcCCC-Cchhh
Q 005044 292 ALQPVIGLLSSCCSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQSPDVQLREMSAFALGRLAQDMH-NQAGI 370 (717)
Q Consensus 292 ~l~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~l~~~~~l~~L~~~l~~~~~~v~~~a~~~L~~l~~~~~-~~~~l 370 (717)
+++.|+.++.+.++.++..++++|++++.+.+.....+.+.|+++.|+.++.++++.++..|+++|++++.+.. ....+
T Consensus 235 ~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~vr~~a~~~L~~l~~~~~~~~~~~ 314 (450)
T 2jdq_A 235 VCRRLVELLMHNDYKVVSPALRAVGNIVTGDDIQTQVILNCSALQSLLHLLSSPKESIKKEACWTISNITAGNRAQIQTV 314 (450)
T ss_dssp THHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHTTTHHHHHHHHTTCSSHHHHHHHHHHHHHHTTSCHHHHHHH
T ss_pred cHHHHHHHHCCCchhHHHHHHHHHHHHhhCChHHHHHHHHCccHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHHHH
Confidence 99999999999999999999999999998877777778889999999999999999999999999999997543 34567
Q ss_pred HhcCChHHHHHhhcCCChhHHHHHHHHHHhccCC--CcchHHHHHhcCccccccchhHHhhhHHHHHHHHHHHHHHhhhc
Q 005044 371 AHNGGLVPLLKLLDSKNGSLQHNAAFALYGLADN--EDNVADFIRVGGVQKLQDGEFIVQATKDCVAKTLKRLEEKIHGR 448 (717)
Q Consensus 371 ~~~~~l~~L~~ll~~~~~~v~~~a~~~L~~l~~~--~~~~~~l~~~~~i~~L~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 448 (717)
.+.++++.|++++.++++.++..++++|.+++.. ++....+.+ .+
T Consensus 315 ~~~~~l~~L~~~l~~~~~~v~~~a~~~L~~l~~~~~~~~~~~l~~---------------------------------~~ 361 (450)
T 2jdq_A 315 IDANIFPALISILQTAEFRTRKEAAWAITNATSGGSAEQIKYLVE---------------------------------LG 361 (450)
T ss_dssp HHTTHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHCCHHHHHHHHH---------------------------------HT
T ss_pred HHCCCHHHHHHHHhcCCHHHHHHHHHHHHHHHcCCCHHHHHHHHH---------------------------------CC
Confidence 7789999999999999999999999999999753 333333333 34
Q ss_pred hHHHHHHHHhhcchhHHHHHHHHHHhccCCCC------------CceeeecCCCHHHHHHHhcCCCchhhhhhHHHHHHh
Q 005044 449 VLNHLLYLMRVAEKGVQRRVALALAHLCSPDD------------QRTIFIDGGGLELLLGLLGSTNPKQQLDGAVALFKL 516 (717)
Q Consensus 449 ~~~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~------------~~~~~~~~~~l~~L~~ll~~~~~~v~~~a~~~l~~L 516 (717)
+++.|+.++.++++.++..++++|.+++...+ ....+.+.||++.|..+..+++..++..|..+|.++
T Consensus 362 ~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~l~~l~~~~~~~v~~~a~~~l~~~ 441 (450)
T 2jdq_A 362 CIKPLCDLLTVMDSKIVQVALNGLENILRLGEQEAKRNGTGINPYCALIEEAYGLDKIEFLQSHENQEIYQKAFDLIEHY 441 (450)
T ss_dssp CHHHHHHGGGSSCHHHHHHHHHHHHHHHHHHHHHHHHSCSCCCHHHHHHHHHHCHHHHHHHHCHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHhcCCCHHHHHHHHHHHHHHHHhchhhhhccccchhHHHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHHH
Confidence 78889999999999999999999999975422 234566778999999999999999999999999988
Q ss_pred hhc
Q 005044 517 ANK 519 (717)
Q Consensus 517 ~~~ 519 (717)
...
T Consensus 442 ~~~ 444 (450)
T 2jdq_A 442 FGT 444 (450)
T ss_dssp HCC
T ss_pred CCc
Confidence 854
No 19
>1xm9_A Plakophilin 1; armadillo repeat, cell adhesion; 2.80A {Homo sapiens} SCOP: a.118.1.24
Probab=100.00 E-value=1e-32 Score=293.54 Aligned_cols=361 Identities=16% Similarity=0.219 Sum_probs=295.9
Q ss_pred HHHHhhhhhccccchHHHHHHHHHHHHHHHHhhc-ChhhHHHHHhCCChHHHHHhhcCCCCCccccCCCccchHHHhHHH
Q 005044 59 VSAQVNVLNTTFSWLEADRAAAKRATHVLAELAK-NEEVVNWIVEGGAVPALVKHLQAPPTSEADRNLKPFEHEVEKGSA 137 (717)
Q Consensus 59 i~~l~~~L~~~~~~~~~~~~~~~~a~~~L~~l~~-~~~~~~~~~~~g~i~~L~~lL~~~~~~~~~~~~~~~~~~v~~~a~ 137 (717)
+|.++.+|.+. +..++..|+++|.+++. ++..+..+++.|++|.|+++|++++. .++..|+
T Consensus 4 l~~lv~~L~s~------~~~~q~~A~~~L~~l~~~~~~~~~~i~~~g~i~~Lv~lL~s~~~------------~~~~~A~ 65 (457)
T 1xm9_A 4 IPKAVQYLSSQ------DEKYQAIGAYYIQHTCFQDESAKQQVYQLGGICKLVDLLRSPNQ------------NVQQAAA 65 (457)
T ss_dssp HHHHHHHHHSS------CTHHHHHHHHHHHHHTSSCSSHHHHHHHTTHHHHHHHHTTSSCH------------HHHHHHH
T ss_pred HHHHHHHHCCC------CHHHHHHHHHHHHHHHcCChHHHHHHHHcCCHHHHHHHHcCCCH------------HHHHHHH
Confidence 67788888764 34579999999999998 56677789999999999999997665 9999999
Q ss_pred HHHHHhc-CChhhHHHHHhCCChHHHHHHHh-ccccCCCccchhHHHHHHHHHHHHHhhcCchhhhHHHhcCCcHHHHHh
Q 005044 138 FALGLLA-VKPEHQQLIVDNGALSHLVNLLK-RHMDSNCSRAVNSVIRRAADAITNLAHENSSIKTRVRMEGGIPPLVEL 215 (717)
Q Consensus 138 ~~L~~l~-~~~~~~~~~~~~~~i~~L~~lL~-~~~~~~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~l 215 (717)
++|.||+ .+++++..+++.|+++.|+.+|+ +.+. ++++.++++|+|++.. +..+..+.. |++|.|+.+
T Consensus 66 ~aL~nLa~~~~~~k~~i~~~G~i~~Lv~lL~~~~~~--------~~~~~a~~aL~nLa~~-~~~~~~i~~-g~i~~Lv~l 135 (457)
T 1xm9_A 66 GALRNLVFRSTTNKLETRRQNGIREAVSLLRRTGNA--------EIQKQLTGLLWNLSST-DELKEELIA-DALPVLADR 135 (457)
T ss_dssp HHHHHHHSSCHHHHHHHHHTTCHHHHHHHHTTCCCH--------HHHHHHHHHHHHHHTS-SSTHHHHHH-HHHHHHHHH
T ss_pred HHHHHHhcCCHHHHHHHHHcCCHHHHHHHHhhCCCH--------HHHHHHHHHHHHHhcC-HHhHHHHHh-ccHHHHHHH
Confidence 9999999 66999999999999999999998 4443 8999999999999996 778888888 999999999
Q ss_pred hc--------C--------CCHHHHHHHHHHHHHhhccChhhHHHHHhc-CCHHHHHHHHcC------CCHHHHHHHHHH
Q 005044 216 LE--------F--------TDTKVQRAAAGALRTLAFKNDENKNQIVEC-NALPTLILMLRS------EDSAIHYEAVGV 272 (717)
Q Consensus 216 l~--------~--------~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~-g~i~~L~~ll~~------~~~~v~~~a~~~ 272 (717)
+. + .++.++..|+|+|+||+.+ ++++..+.+. |+++.|+.++++ .+..+...++++
T Consensus 136 l~~~~s~~~~~~~~~~~e~~~~~v~~~a~~aL~nLs~~-~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~~~e~a~~~ 214 (457)
T 1xm9_A 136 VIIPFSGWCDGNSNMSREVVDPEVFFNATGCLRNLSSA-DAGRQTMRNYSGLIDSLMAYVQNCVAASRCDDKSVENCMCV 214 (457)
T ss_dssp TTHHHHTCC---------CCCHHHHHHHHHHHHHHTTS-HHHHHHHTTSTTHHHHHHHHHHHHHHHTCTTCTTHHHHHHH
T ss_pred HhccccccccCccchhcccccHHHHHHHHHHHHHHccC-HHHHHHHHHcCCCHHHHHHHHHhhccccCCchHHHHHHHHH
Confidence 93 2 2466778999999999985 8889999987 999999999985 455678889999
Q ss_pred HHHhhcCC--------------------------------------------------hHHHHHHHHcCChHHHHHhhcc
Q 005044 273 IGNLVHSS--------------------------------------------------PNIKKEVLAAGALQPVIGLLSS 302 (717)
Q Consensus 273 L~~l~~~~--------------------------------------------------~~~~~~~~~~g~l~~L~~ll~~ 302 (717)
|.+++... +...+.+++.|+++.|+.+|.+
T Consensus 215 L~nLs~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~~L~~lL~~ 294 (457)
T 1xm9_A 215 LHNLSYRLDAEVPTRYRQLEYNARNAYTEKSSTGCFSNKSDKMMNNNYDCPLPEEETNPKGSGWLYHSDAIRTYLNLMGK 294 (457)
T ss_dssp HHHHTTTHHHHSCCHHHHHHHTC----------------------------CCCCCSSCCGGGGGGSHHHHHHHHHHHHH
T ss_pred HHhcccchhccCcchhhhcccccccccccccccchhhccchhhhhccccCCccccccCchHHHHHhCcchHHHHHHHHhh
Confidence 99986321 0011223345678889999976
Q ss_pred C-ChHHHHHHHHHHHHHhcCChhh-----HHHHHhcCChHHHHHHhcCCCHHHHHHHHHHHHHhhcCCCCchhhHhcCCh
Q 005044 303 C-CSESQREAALLLGQFAATDSDC-----KVHIVQRGAVRPLIEMLQSPDVQLREMSAFALGRLAQDMHNQAGIAHNGGL 376 (717)
Q Consensus 303 ~-~~~~~~~a~~~L~~l~~~~~~~-----~~~l~~~~~l~~L~~~l~~~~~~v~~~a~~~L~~l~~~~~~~~~l~~~~~l 376 (717)
. ++.+++.|+|+|+|++.++... +..+.+.|++|.|+++|.+++..++..|+|+|.||+.+..++. ++..+++
T Consensus 295 ~~~~~~~e~a~~aL~nl~~~~~~~~~~~~~~~v~~~~~l~~Lv~LL~~~~~~v~~~A~~aL~nls~~~~~~~-~i~~~~i 373 (457)
T 1xm9_A 295 SKKDATLEACAGALQNLTASKGLMSSGMSQLIGLKEKGLPQIARLLQSGNSDVVRSGASLLSNMSRHPLLHR-VMGNQVF 373 (457)
T ss_dssp CCCHHHHHHHHHHHHHHTTCSSSHHHHHHHHHHTTSCCHHHHHHHTTCSCHHHHHHHHHHHHHHHTSGGGHH-HHHHHTH
T ss_pred cCCHHHHHHHHHHHHHhccCcCcchHHHHHHHHHHcCCchHHHHHHhCCCHhHHHHHHHHHHHHhcCHHHHH-HHHHhhh
Confidence 5 5889999999999999765432 2334468999999999999999999999999999999766554 4456899
Q ss_pred HHHHHhhcCCC------hhHHHHHHHHHHhccC-CCcchHHHHHhcCccccccchhHHhhhHHHHHHHHHHHHHHhhhch
Q 005044 377 VPLLKLLDSKN------GSLQHNAAFALYGLAD-NEDNVADFIRVGGVQKLQDGEFIVQATKDCVAKTLKRLEEKIHGRV 449 (717)
Q Consensus 377 ~~L~~ll~~~~------~~v~~~a~~~L~~l~~-~~~~~~~l~~~~~i~~L~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 449 (717)
++|+++|.+.+ .++...++++|.|+.. +++....+.+ .|+
T Consensus 374 ~~Lv~lL~~~~~~~~~~~~v~~~~l~~l~ni~~~~~~~~~~i~~---------------------------------~g~ 420 (457)
T 1xm9_A 374 PEVTRLLTSHTGNTSNSEDILSSACYTVRNLMASQPQLAKQYFS---------------------------------SSM 420 (457)
T ss_dssp HHHHHTTTSCCSCSTTHHHHHHHHHHHHHHHHTTCTHHHHHHCC---------------------------------HHH
T ss_pred HHHHHhccCCCCCCCCcHHHHHHHHHHHHHHHhcCHHHHHHHHH---------------------------------cCC
Confidence 99999998764 3688899999999965 4444444444 347
Q ss_pred HHHHHHHHhhc-chhHHHHHHHHHHhccCCCCCc
Q 005044 450 LNHLLYLMRVA-EKGVQRRVALALAHLCSPDDQR 482 (717)
Q Consensus 450 ~~~L~~ll~~~-~~~v~~~a~~aL~~l~~~~~~~ 482 (717)
++.|+.++.++ ++.++..|+++|.++..+.+.+
T Consensus 421 l~~L~~L~~~~~~~~i~~~A~~~L~~~~~~~~l~ 454 (457)
T 1xm9_A 421 LNNIINLCRSSASPKAAEAARLLLSDMWSSKELQ 454 (457)
T ss_dssp HHHHHHHHHCTTCHHHHHHHHHHHHTTSSSTTCS
T ss_pred HHHHHHHHcCCCcHHHHHHHHHHHHHHHcchhhh
Confidence 88899999999 9999999999999998877644
No 20
>4b8j_A Importin subunit alpha-1A; transport protein, nuclear localization signal; 2.00A {Oryza sativa japonica group} PDB: 4b8o_A 2yns_A 4b8p_A
Probab=100.00 E-value=1.9e-31 Score=291.76 Aligned_cols=362 Identities=20% Similarity=0.287 Sum_probs=308.7
Q ss_pred HHHHHHHHHHHHHhhc-ChhhHHHHHhCCChHHHHHhhcCCCCCccccCCCccchHHHhHHHHHHHHhc-CChhhHHHHH
Q 005044 77 RAAAKRATHVLAELAK-NEEVVNWIVEGGAVPALVKHLQAPPTSEADRNLKPFEHEVEKGSAFALGLLA-VKPEHQQLIV 154 (717)
Q Consensus 77 ~~~~~~a~~~L~~l~~-~~~~~~~~~~~g~i~~L~~lL~~~~~~~~~~~~~~~~~~v~~~a~~~L~~l~-~~~~~~~~~~ 154 (717)
..++..|+++|.+++. +++++..+++.|++|.|+.+|.+++. .++..|+++|++++ +.+.++..+.
T Consensus 132 ~~v~~~A~~~L~~l~~~~~~~~~~~~~~g~i~~L~~lL~~~~~------------~v~~~a~~aL~~l~~~~~~~~~~i~ 199 (528)
T 4b8j_A 132 PQLQFEAAWALTNIASGTSENTKVVIDHGAVPIFVKLLGSSSD------------DVREQAVWALGNVAGDSPKCRDLVL 199 (528)
T ss_dssp HHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTCSCH------------HHHHHHHHHHHHHHHTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCCCHHHHHHHHhCCcHHHHHHHhcCCCH------------HHHHHHHHHHHHHhCCChhhHHHHH
Confidence 5579999999999999 58999999999999999999998655 99999999999999 8889999999
Q ss_pred hCCChHHHHHHHhccccCCCccchhHHHHHHHHHHHHHhhcCchhhhHHHhcCCcHHHHHhhcCCCHHHHHHHHHHHHHh
Q 005044 155 DNGALSHLVNLLKRHMDSNCSRAVNSVIRRAADAITNLAHENSSIKTRVRMEGGIPPLVELLEFTDTKVQRAAAGALRTL 234 (717)
Q Consensus 155 ~~~~i~~L~~lL~~~~~~~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~L 234 (717)
..|+++.|+.+|....+. .++..++++|.+++...+.. ......++++.|+.++.++++.++..++++|.++
T Consensus 200 ~~g~l~~Ll~lL~~~~~~-------~v~~~a~~~L~~L~~~~~~~-~~~~~~~~l~~L~~lL~~~~~~v~~~a~~aL~~l 271 (528)
T 4b8j_A 200 ANGALLPLLAQLNEHTKL-------SMLRNATWTLSNFCRGKPQP-SFEQTRPALPALARLIHSNDEEVLTDACWALSYL 271 (528)
T ss_dssp HTTCHHHHHHTCCTTCCH-------HHHHHHHHHHHHHHCSSSCC-CHHHHTTHHHHHHHHTTCCCHHHHHHHHHHHHHH
T ss_pred HCCcHHHHHHHHhcCCCH-------HHHHHHHHHHHHHHcCCCCC-cHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHH
Confidence 999999999999543321 89999999999999865433 3445688999999999999999999999999999
Q ss_pred hccChhhHHHHHhcCCHHHHHHHHcCCCHHHHHHHHHHHHHhhcCChHHHHHHHHcCChHHHHHhhccC-ChHHHHHHHH
Q 005044 235 AFKNDENKNQIVECNALPTLILMLRSEDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLSSC-CSESQREAAL 313 (717)
Q Consensus 235 ~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~l~~L~~ll~~~-~~~~~~~a~~ 313 (717)
+.+.+.....+.+.|+++.|+.+|.++++.++..|+++|++++.+++...+.+++.|+++.|+.++.++ ++.++..|++
T Consensus 272 ~~~~~~~~~~~~~~g~v~~Lv~lL~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~A~~ 351 (528)
T 4b8j_A 272 SDGTNDKIQAVIEAGVCPRLVELLLHPSPSVLIPALRTVGNIVTGDDAQTQCIIDHQALPCLLSLLTQNLKKSIKKEACW 351 (528)
T ss_dssp TSSCHHHHHHHHHTTCHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHTTTHHHHHHHHHHSCCCHHHHHHHHH
T ss_pred HcCCHHHHHHHHHcCHHHHHHHHHcCCChhHHHHHHHHHHHHHcCCHHHHHHHHHhhhHHHHHHHHcCCCcHHHHHHHHH
Confidence 987777777888999999999999999999999999999999998888888899999999999999998 8999999999
Q ss_pred HHHHHhcCChhhHHHHHhcCChHHHHHHhcCCCHHHHHHHHHHHHHhhcC--CCCchhhHhcCChHHHHHhhcCCChhHH
Q 005044 314 LLGQFAATDSDCKVHIVQRGAVRPLIEMLQSPDVQLREMSAFALGRLAQD--MHNQAGIAHNGGLVPLLKLLDSKNGSLQ 391 (717)
Q Consensus 314 ~L~~l~~~~~~~~~~l~~~~~l~~L~~~l~~~~~~v~~~a~~~L~~l~~~--~~~~~~l~~~~~l~~L~~ll~~~~~~v~ 391 (717)
+|+|++..++.....+.+.|+++.|+.++.++++.++..|+++|.|++.. +.....+++.|+++.|+.++.+.++.++
T Consensus 352 ~L~nl~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~~~i~~L~~lL~~~d~~v~ 431 (528)
T 4b8j_A 352 TISNITAGNKDQIQAVINAGIIGPLVNLLQTAEFDIKKEAAWAISNATSGGSHDQIKYLVSEGCIKPLCDLLICPDIRIV 431 (528)
T ss_dssp HHHHHHTSCHHHHHHHHHTTCHHHHHHHHHHSCHHHHHHHHHHHHHHHHHSCHHHHHHHHHTTCHHHHHHGGGCSCHHHH
T ss_pred HHHHHHCCCHHHHHHHHHCCCHHHHHHHHhcCCHHHHHHHHHHHHHHHcCCCHHHHHHHHHCCCHHHHHHHHcCCCHHHH
Confidence 99999987788888889999999999999999999999999999999975 3445678889999999999999999999
Q ss_pred HHHHHHHHhccCCCcchHHHHHhcCccccccchhHHhhhHHHHHHHHHHHHHHhhhchHHHHHHHHhhcchhHHHHHHHH
Q 005044 392 HNAAFALYGLADNEDNVADFIRVGGVQKLQDGEFIVQATKDCVAKTLKRLEEKIHGRVLNHLLYLMRVAEKGVQRRVALA 471 (717)
Q Consensus 392 ~~a~~~L~~l~~~~~~~~~l~~~~~i~~L~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~L~~ll~~~~~~v~~~a~~a 471 (717)
..++++|.+|....+........+ ... ......+.+.+..+..+..+++++++..|..+
T Consensus 432 ~~al~~L~~l~~~~~~~~~~~~~~-~~~--------------------~~~~i~~~~~~~~l~~L~~~~~~~v~~~a~~i 490 (528)
T 4b8j_A 432 TVCLEGLENILKVGETDKTLAAGD-VNV--------------------FSQMIDEAEGLEKIENLQSHDNNEIYEKAVKI 490 (528)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTCS-CCH--------------------HHHHHHHTTHHHHHHHGGGCSSHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhhhccccc-ccH--------------------HHHHHHHCCcHHHHHHHHcCCCHHHHHHHHHH
Confidence 999999999975332211111000 000 00111234567778888899999999999999
Q ss_pred HHhccCCC
Q 005044 472 LAHLCSPD 479 (717)
Q Consensus 472 L~~l~~~~ 479 (717)
|.++....
T Consensus 491 l~~~~~~e 498 (528)
T 4b8j_A 491 LEAYWMDE 498 (528)
T ss_dssp HHHHCC--
T ss_pred HHHHCCCc
Confidence 99886553
No 21
>1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A
Probab=100.00 E-value=4.1e-31 Score=289.02 Aligned_cols=364 Identities=17% Similarity=0.244 Sum_probs=311.5
Q ss_pred HHHHHHHHHHHHHHhhc-ChhhHHHHHhCCChHHHHHhhcCCCCCccccCCCccchHHHhHHHHHHHHhc-CChhhHHHH
Q 005044 76 DRAAAKRATHVLAELAK-NEEVVNWIVEGGAVPALVKHLQAPPTSEADRNLKPFEHEVEKGSAFALGLLA-VKPEHQQLI 153 (717)
Q Consensus 76 ~~~~~~~a~~~L~~l~~-~~~~~~~~~~~g~i~~L~~lL~~~~~~~~~~~~~~~~~~v~~~a~~~L~~l~-~~~~~~~~~ 153 (717)
+..++..|+++|.+++. +++.+..++..|++|.|+.+|.+++. .++..|+++|++++ ++++.+..+
T Consensus 144 ~~~v~~~A~~~L~~l~~~~~~~~~~~~~~g~i~~Lv~lL~~~~~------------~vr~~A~~aL~~l~~~~~~~~~~~ 211 (530)
T 1wa5_B 144 PEMLQLEAAWALTNIASGTSAQTKVVVDADAVPLFIQLLYTGSV------------EVKEQAIWALGNVAGDSTDYRDYV 211 (530)
T ss_dssp CHHHHHHHHHHHHHHTTSCHHHHHHHHHTTCHHHHHHHHHHCCH------------HHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred CHHHHHHHHHHHHHHhCCCHHHHHHHHHCCCHHHHHHHHcCCCH------------HHHHHHHHHHHHHhCCCccchHHH
Confidence 45579999999999999 57888889999999999999997655 99999999999999 678899999
Q ss_pred HhCCChHHHHHHHhccccCCCccchhHHHHHHHHHHHHHhhcCchhhhHHHhcCCcHHHHHhhcCCCHHHHHHHHHHHHH
Q 005044 154 VDNGALSHLVNLLKRHMDSNCSRAVNSVIRRAADAITNLAHENSSIKTRVRMEGGIPPLVELLEFTDTKVQRAAAGALRT 233 (717)
Q Consensus 154 ~~~~~i~~L~~lL~~~~~~~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~ 233 (717)
...|+++.|+.++.+.+. +++..++++|.+++.............++++.|+.++.++++.++..++++|.+
T Consensus 212 ~~~~~l~~L~~ll~~~~~--------~v~~~a~~~L~~L~~~~~~~~~~~~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~ 283 (530)
T 1wa5_B 212 LQCNAMEPILGLFNSNKP--------SLIRTATWTLSNLCRGKKPQPDWSVVSQALPTLAKLIYSMDTETLVDACWAISY 283 (530)
T ss_dssp HHTTCHHHHHHGGGSCCH--------HHHHHHHHHHHHHHCCSSSCCCHHHHGGGHHHHHHHTTCCCHHHHHHHHHHHHH
T ss_pred HHcCcHHHHHHHhccCCH--------HHHHHHHHHHHHHhCCCCCCCcHHHHHhHHHHHHHHHcCCCHHHHHHHHHHHHH
Confidence 999999999999987443 899999999999998653344455668999999999999999999999999999
Q ss_pred hhccChhhHHHHHhcCCHHHHHHHHcCCCHHHHHHHHHHHHHhhcCChHHHHHHHHcCChHHHHHhhccCChHHHHHHHH
Q 005044 234 LAFKNDENKNQIVECNALPTLILMLRSEDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLSSCCSESQREAAL 313 (717)
Q Consensus 234 L~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~l~~L~~ll~~~~~~~~~~a~~ 313 (717)
|+...++....+.+.|+++.|+.++.++++.++..|+++|++++.+++...+.+.+.|+++.|+.+|.++++.++..|++
T Consensus 284 L~~~~~~~~~~~~~~~~v~~Lv~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~vr~~A~~ 363 (530)
T 1wa5_B 284 LSDGPQEAIQAVIDVRIPKRLVELLSHESTLVQTPALRAVGNIVTGNDLQTQVVINAGVLPALRLLLSSPKENIKKEACW 363 (530)
T ss_dssp HHSSCHHHHHHHHHTTCHHHHHHGGGCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHH
T ss_pred HhCCCHHHHHHHHhcCcHHHHHHHHCCCChhhHHHHHHHHHHHHcCCHHHHHHHHHcchHHHHHHHHcCCCHHHHHHHHH
Confidence 99877777888889999999999999999999999999999999888888888899999999999999999999999999
Q ss_pred HHHHHhcCChhhHHHHHhcCChHHHHHHhcCCCHHHHHHHHHHHHHhhcCC----CCchhhHhcCChHHHHHhhcCCChh
Q 005044 314 LLGQFAATDSDCKVHIVQRGAVRPLIEMLQSPDVQLREMSAFALGRLAQDM----HNQAGIAHNGGLVPLLKLLDSKNGS 389 (717)
Q Consensus 314 ~L~~l~~~~~~~~~~l~~~~~l~~L~~~l~~~~~~v~~~a~~~L~~l~~~~----~~~~~l~~~~~l~~L~~ll~~~~~~ 389 (717)
+|++++.+++.....+.+.|+++.|+.++.++++.++..|+++|++++... .....+.+.|+++.|+.++.+.++.
T Consensus 364 aL~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~aL~~l~~~~~~~~~~~~~l~~~~~l~~L~~ll~~~~~~ 443 (530)
T 1wa5_B 364 TISNITAGNTEQIQAVIDANLIPPLVKLLEVAEYKTKKEACWAISNASSGGLQRPDIIRYLVSQGCIKPLCDLLEIADNR 443 (530)
T ss_dssp HHHHHTTSCHHHHHHHHHTTCHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTTTCTHHHHHHHHTTCHHHHHHHTTTCCHH
T ss_pred HHHHHHcCCHHHHHHHHHCCCHHHHHHHHhcCCHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHCCCHHHHHHHHhCCCHH
Confidence 999999877777778889999999999999999999999999999999742 3456788899999999999999999
Q ss_pred HHHHHHHHHHhccCCCcchHHHHHhcCccccccchhHHhhhHHHHHHHHHHHHHHhhhchHHHHHHHHhhcchhHHHHHH
Q 005044 390 LQHNAAFALYGLADNEDNVADFIRVGGVQKLQDGEFIVQATKDCVAKTLKRLEEKIHGRVLNHLLYLMRVAEKGVQRRVA 469 (717)
Q Consensus 390 v~~~a~~~L~~l~~~~~~~~~l~~~~~i~~L~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~L~~ll~~~~~~v~~~a~ 469 (717)
++..++++|.+++...+..... ..+.... ......+.++++.|..++.+++++++..|.
T Consensus 444 v~~~al~aL~~l~~~~~~~~~~-~~~~~~~--------------------~~~~l~~~g~~~~L~~L~~~~~~~v~~~a~ 502 (530)
T 1wa5_B 444 IIEVTLDALENILKMGEADKEA-RGLNINE--------------------NADFIEKAGGMEKIFNCQQNENDKIYEKAY 502 (530)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH-HTCSSCH--------------------HHHHHHHTTHHHHHHGGGGCSCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhhhhhhc-ccccccH--------------------HHHHHHHcCcHHHHHHHHcCCCHHHHHHHH
Confidence 9999999999997543221110 0000000 001123456788899999999999999999
Q ss_pred HHHHhccCCCC
Q 005044 470 LALAHLCSPDD 480 (717)
Q Consensus 470 ~aL~~l~~~~~ 480 (717)
.+|.++....+
T Consensus 503 ~il~~~~~~~~ 513 (530)
T 1wa5_B 503 KIIETYFGEEE 513 (530)
T ss_dssp HHHHHHSSSCC
T ss_pred HHHHHHCCccc
Confidence 99999876543
No 22
>2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio}
Probab=100.00 E-value=1.9e-31 Score=302.20 Aligned_cols=435 Identities=20% Similarity=0.237 Sum_probs=358.4
Q ss_pred HHHHHHHhhhhhccccchHHHHHHHHHHHHHHHHhhcChhhHHHHHhC-CChHHHHHhhcCCCCCccccCCCccchHHHh
Q 005044 56 LSEVSAQVNVLNTTFSWLEADRAAAKRATHVLAELAKNEEVVNWIVEG-GAVPALVKHLQAPPTSEADRNLKPFEHEVEK 134 (717)
Q Consensus 56 ~~~i~~l~~~L~~~~~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~-g~i~~L~~lL~~~~~~~~~~~~~~~~~~v~~ 134 (717)
...++.++.+|.. .+..++..|+.+|.+++.+...+..+... |+++.|+.+|..+.. +.++.
T Consensus 149 ~g~ip~Lv~lL~~------~d~~vr~~A~~~L~~L~~~~~~~~~i~~~~~~i~~Lv~~L~~~~d-----------~~vr~ 211 (780)
T 2z6g_A 149 TRAIPELTKLLND------EDQVVVNKAAVMVHQLSKKEASRHAIMRSPQMVSAIVRTMQNTND-----------VETAR 211 (780)
T ss_dssp HHHHHHHHHHHHC------SCHHHHHHHHHHHHHHHTSHHHHHHHTTCHHHHHHHHHHHHHCCC-----------HHHHH
T ss_pred hCCHHHHHHHHCC------CCHHHHHHHHHHHHHHhCCChhHHHHHhccChHHHHHHHHcCCCC-----------HHHHH
Confidence 3446666666652 25568999999999999977777777654 899999999976522 28999
Q ss_pred HHHHHHHHhcCChhhHHHHHhCCChHHHHHHHhccccCCCccchhHHHHHHHHHHHHHhhcCchhhhHHHhcCCcHHHHH
Q 005044 135 GSAFALGLLAVKPEHQQLIVDNGALSHLVNLLKRHMDSNCSRAVNSVIRRAADAITNLAHENSSIKTRVRMEGGIPPLVE 214 (717)
Q Consensus 135 ~a~~~L~~l~~~~~~~~~~~~~~~i~~L~~lL~~~~~~~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ 214 (717)
.|+.+|.+++..++++..+.+.|+++.|+.+|++.+. .++..|+++|.+++...+..+..+...|+++.|+.
T Consensus 212 ~Aa~aL~~Ls~~~~~~~~i~~~g~I~~Lv~lL~~~~~--------~v~~~A~~aL~nLa~~~~~~~~~v~~~g~v~~Lv~ 283 (780)
T 2z6g_A 212 CTSGTLHNLSHHREGLLAIFKSGGIPALVNMLGSPVD--------SVLFHAITTLHNLLLHQEGAKMAVRLAGGLQKMVA 283 (780)
T ss_dssp HHHHHHHHHHTSHHHHHHHHHTTHHHHHHHHTTCSCH--------HHHHHHHHHHHHHHHHSTTHHHHHHHTTHHHHHHH
T ss_pred HHHHHHHHHhCCchhHHHHHHcCCHHHHHHHHcCCCH--------HHHHHHHHHHHHHhCCChhhHHHHHHcCCHHHHHH
Confidence 9999999999778889999999999999999988755 89999999999999988888888888999999999
Q ss_pred hhcCCCHHHHHHHHHHHHHhhccChhhHHHHHhcCCHHHHHHHHcCCCH-HHHHHHHHHHHHhhcCChHHHHHHHHcCCh
Q 005044 215 LLEFTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSEDS-AIHYEAVGVIGNLVHSSPNIKKEVLAAGAL 293 (717)
Q Consensus 215 ll~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~g~i~~L~~ll~~~~~-~v~~~a~~~L~~l~~~~~~~~~~~~~~g~l 293 (717)
++.+++..++..++.+|.+++..+++.+..+.+.|+++.|+.++++.++ ..+..++.+|.+++.. +..+..+++.|++
T Consensus 284 lL~~~~~~v~~~a~~aL~~La~~~~e~~~~i~~~~~i~~Lv~lL~~~~~~~~~~~a~~aL~~Ls~~-~~~~~~i~~~g~l 362 (780)
T 2z6g_A 284 LLNKTNVKFLAITTDCLQILAYGNQESKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSVC-SSNKPAIVEAGGM 362 (780)
T ss_dssp GGGCCCHHHHHHHHHHHHHHHTTCHHHHHHHHTTTHHHHHHHHHTTCCCHHHHHHHHHHHHHHHTS-TTHHHHHHHTTHH
T ss_pred HHhcCCHHHHHHHHHHHHHHhcCChHHHHHHHHcCCHHHHHHHHhcCCHHHHHHHHHHHHHHhhcC-hHHHHHHHHhchH
Confidence 9999999999999999999998788999999999999999999997655 4566789999999864 5567888999999
Q ss_pred HHHHHhhccCChHHHHHHHHHHHHHhcCChhhHHHHHhcCChHHHHHHhcCCCHHHHHHHHHHHHHhhcCC-CCchhhHh
Q 005044 294 QPVIGLLSSCCSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQSPDVQLREMSAFALGRLAQDM-HNQAGIAH 372 (717)
Q Consensus 294 ~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~l~~~~~l~~L~~~l~~~~~~v~~~a~~~L~~l~~~~-~~~~~l~~ 372 (717)
+.|+.++.+.+..++..++++|.+++...+.. ....++++.|+.++.+.++.++..|+++|++|+.++ .++..+.+
T Consensus 363 ~~Ll~lL~~~~~~~~~~a~~~L~~L~~~~~~~---~~~~~~i~~Lv~lL~~~d~~vr~~A~~aL~~L~~~~~~~~~~i~~ 439 (780)
T 2z6g_A 363 QALGLHLTDPSQRLVQNCLWTLRNLSDAATKQ---EGMEGLLGTLVQLLGSDDINVVTCAAGILSNLTCNNYKNKMMVCQ 439 (780)
T ss_dssp HHHGGGTTCSCHHHHHHHHHHHHHHHTTCTTC---SCCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTSSCHHHHHHHHT
T ss_pred HHHHHHHcCCchHHHHHHHHHHHHHhccchhh---hhhhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhCCHHHHHHHHH
Confidence 99999999999999999999999998654331 123568999999999999999999999999999865 45677888
Q ss_pred cCChHHHHHhhcC-CC-hhHHHHHHHHHHhccCCCcc----hHHHHHhcCccccccchhHHh--hhHHHHHHHHHHHH--
Q 005044 373 NGGLVPLLKLLDS-KN-GSLQHNAAFALYGLADNEDN----VADFIRVGGVQKLQDGEFIVQ--ATKDCVAKTLKRLE-- 442 (717)
Q Consensus 373 ~~~l~~L~~ll~~-~~-~~v~~~a~~~L~~l~~~~~~----~~~l~~~~~i~~L~~~~~~~~--~~~~~~~~~~~~l~-- 442 (717)
.|+++.|++++.+ .+ ..++..|+++|.+|+..... +..+...|+++.|.+...... ..+.....++.++.
T Consensus 440 ~g~i~~Lv~lL~~~~~~~~v~~~Al~aL~nL~~~~~~~~~~~~~v~~~~~l~~L~~lL~~~~~~~v~~~A~~aL~nLa~~ 519 (780)
T 2z6g_A 440 VGGIEALVRTVLRAGDREDITEPAICALRHLTSRHQDAEMAQNAVRLHYGLPVVVKLLHPPSHWPLIKATVGLIRNLALC 519 (780)
T ss_dssp TTHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSSTTHHHHHHHHHHTTCHHHHHHTTSTTCCHHHHHHHHHHHHHHHSS
T ss_pred CCCHHHHHHHHHccCCHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHcCCHHHHHHHhcCCChHHHHHHHHHHHHHHhcC
Confidence 8999999999975 33 48999999999999864322 457788898888877544322 23333333444442
Q ss_pred -----HHhhhchHHHHHHHHhhcch----------------------hHHHHHHHHHHhccCCCCCceeeecCCCHHHHH
Q 005044 443 -----EKIHGRVLNHLLYLMRVAEK----------------------GVQRRVALALAHLCSPDDQRTIFIDGGGLELLL 495 (717)
Q Consensus 443 -----~~~~~~~~~~L~~ll~~~~~----------------------~v~~~a~~aL~~l~~~~~~~~~~~~~~~l~~L~ 495 (717)
...+.++++.|+.+|.++++ +++..++.+|++++....++..+.+.|+++.|+
T Consensus 520 ~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~aa~al~nq~~~~~~~~~~v~~~a~~aL~~La~~~~~~~~l~~~~~i~~Lv 599 (780)
T 2z6g_A 520 PANHAPLREQGAIPRLVQLLVRAHQDTQRRTSMGGTQQQFVEGVRMEEIVEACTGALHILARDIHNRIVIRGLNTIPLFV 599 (780)
T ss_dssp HHHHHHHHHTTHHHHHHHHHHHHHHHHHHTTC------CCSTTCCHHHHHHHHHHHHHHHTTSHHHHHHHHHTCCHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHhcchhHHHHHhhccccchhhcccChHHHHHHHHHHHHHHhcChhhHHHHHHCCcHHHHH
Confidence 33467899999999987543 456678888999987766777788899999999
Q ss_pred HHhcCCCchhhhhhHHHHHHhhhc
Q 005044 496 GLLGSTNPKQQLDGAVALFKLANK 519 (717)
Q Consensus 496 ~ll~~~~~~v~~~a~~~l~~L~~~ 519 (717)
.++.++++.++..|+.+|.+|+.+
T Consensus 600 ~lL~~~~~~v~~~a~~aL~~L~~~ 623 (780)
T 2z6g_A 600 QLLYSPIENIQRVAAGVLCELAQD 623 (780)
T ss_dssp HGGGCSCHHHHHHHHHHHHHHHTS
T ss_pred HHHcCCCHHHHHHHHHHHHHHhcC
Confidence 999999999999999999999854
No 23
>2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A
Probab=100.00 E-value=1.1e-30 Score=280.51 Aligned_cols=377 Identities=19% Similarity=0.247 Sum_probs=314.4
Q ss_pred HHHHHHhhhhhccccchHHHHHHHHHHHHHHHHhhc-ChhhHHHHHhCCChHHHHHhhcCCCCCccccCCCccchHHHhH
Q 005044 57 SEVSAQVNVLNTTFSWLEADRAAAKRATHVLAELAK-NEEVVNWIVEGGAVPALVKHLQAPPTSEADRNLKPFEHEVEKG 135 (717)
Q Consensus 57 ~~i~~l~~~L~~~~~~~~~~~~~~~~a~~~L~~l~~-~~~~~~~~~~~g~i~~L~~lL~~~~~~~~~~~~~~~~~~v~~~ 135 (717)
..++.+++.|... .+..++..|+++|.+++. +++....+++.|++|.|+++|++++. .++..
T Consensus 64 ~~i~~L~~~L~~~-----~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~lL~~~~~------------~vr~~ 126 (450)
T 2jdq_A 64 GVVARFVEFLKRK-----ENCTLQFESAWVLTNIASGNSLQTRIVIQAGAVPIFIELLSSEFE------------DVQEQ 126 (450)
T ss_dssp THHHHHHHHHTCT-----TCHHHHHHHHHHHHHHHSSCHHHHHHHHHTTHHHHHHHHTTCSCH------------HHHHH
T ss_pred CcHHHHHHHHCCC-----CCHHHHHHHHHHHHHHhcCCHHHHHHHHhCCCHHHHHHHHcCCCH------------HHHHH
Confidence 3566666666532 244579999999999998 57778888899999999999998655 99999
Q ss_pred HHHHHHHhc-CChhhHHHHHhCCChHHHHHHHhccccCCCccchhHHHHHHHHHHHHHhhcC-chhhhHHHhcCCcHHHH
Q 005044 136 SAFALGLLA-VKPEHQQLIVDNGALSHLVNLLKRHMDSNCSRAVNSVIRRAADAITNLAHEN-SSIKTRVRMEGGIPPLV 213 (717)
Q Consensus 136 a~~~L~~l~-~~~~~~~~~~~~~~i~~L~~lL~~~~~~~~~~~~~~~~~~a~~~L~~l~~~~-~~~~~~~~~~~~i~~L~ 213 (717)
|+++|++++ +.++.+..+...|+++.|+.++.+..+. .++..++++|.+++... +..+..+. .++++.|+
T Consensus 127 a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~l~~~~~~-------~v~~~a~~~L~~l~~~~~~~~~~~~~-~~~l~~L~ 198 (450)
T 2jdq_A 127 AVWALGNIAGDSTMCRDYVLDCNILPPLLQLFSKQNRL-------TMTRNAVWALSNLCRGKSPPPEFAKV-SPCLNVLS 198 (450)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHTTCHHHHHHHTTSCCCH-------HHHHHHHHHHHHHHCCSSSCCCGGGT-GGGHHHHH
T ss_pred HHHHHHHHccCCHHHHHHHHHCCCHHHHHHHhcCCCCH-------HHHHHHHHHHHHHhCCCCCCCCHHHH-HHHHHHHH
Confidence 999999999 7788999999999999999999853221 89999999999999755 43333333 78999999
Q ss_pred HhhcCCCHHHHHHHHHHHHHhhccChhhHHHHHhcCCHHHHHHHHcCCCHHHHHHHHHHHHHhhcCChHHHHHHHHcCCh
Q 005044 214 ELLEFTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSEDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGAL 293 (717)
Q Consensus 214 ~ll~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~l 293 (717)
.++.++++.++..++++|.+++...++....+.+.|+++.|+.++.++++.++..|+++|++++...+...+.+.+.|++
T Consensus 199 ~~l~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l 278 (450)
T 2jdq_A 199 WLLFVSDTDVLADACWALSYLSDGPNDKIQAVIDAGVCRRLVELLMHNDYKVVSPALRAVGNIVTGDDIQTQVILNCSAL 278 (450)
T ss_dssp HHTTCCCHHHHHHHHHHHHHHTSSSHHHHHHHHHTTTHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHTTTHH
T ss_pred HHHccCCHHHHHHHHHHHHHHHCCCcHHHHHHHHcCcHHHHHHHHCCCchhHHHHHHHHHHHHhhCChHHHHHHHHCccH
Confidence 99999999999999999999998777788888899999999999999999999999999999998888877888889999
Q ss_pred HHHHHhhccCChHHHHHHHHHHHHHhcCChhhHHHHHhcCChHHHHHHhcCCCHHHHHHHHHHHHHhhcC--CCCchhhH
Q 005044 294 QPVIGLLSSCCSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQSPDVQLREMSAFALGRLAQD--MHNQAGIA 371 (717)
Q Consensus 294 ~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~l~~~~~l~~L~~~l~~~~~~v~~~a~~~L~~l~~~--~~~~~~l~ 371 (717)
+.|+.++.++++.++..|+++|++++.+++.....+.+.|+++.|+.++.++++.++..++++|++++.. +.....++
T Consensus 279 ~~L~~ll~~~~~~vr~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~~l~~~~~~v~~~a~~~L~~l~~~~~~~~~~~l~ 358 (450)
T 2jdq_A 279 QSLLHLLSSPKESIKKEACWTISNITAGNRAQIQTVIDANIFPALISILQTAEFRTRKEAAWAITNATSGGSAEQIKYLV 358 (450)
T ss_dssp HHHHHHTTCSSHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHCCHHHHHHHH
T ss_pred HHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHhcCCHHHHHHHHHHHHHHHcCCCHHHHHHHH
Confidence 9999999999999999999999999987788878888899999999999999999999999999999974 23445677
Q ss_pred hcCChHHHHHhhcCCChhHHHHHHHHHHhccCCCcchHHHHHhcCccccccchhHHhhhHHHHHHHHHHHHHHhhhchHH
Q 005044 372 HNGGLVPLLKLLDSKNGSLQHNAAFALYGLADNEDNVADFIRVGGVQKLQDGEFIVQATKDCVAKTLKRLEEKIHGRVLN 451 (717)
Q Consensus 372 ~~~~l~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~l~~~~~i~~L~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 451 (717)
+.|+++.|++++.+.++.++..++++|.+++...+..... ..+.+..+ .....+.+.++
T Consensus 359 ~~~~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~-~~~~~~~~--------------------~~~l~~~g~~~ 417 (450)
T 2jdq_A 359 ELGCIKPLCDLLTVMDSKIVQVALNGLENILRLGEQEAKR-NGTGINPY--------------------CALIEEAYGLD 417 (450)
T ss_dssp HHTCHHHHHHGGGSSCHHHHHHHHHHHHHHHHHHHHHHHH-SCSCCCHH--------------------HHHHHHHHCHH
T ss_pred HCCCHHHHHHHhcCCCHHHHHHHHHHHHHHHHhchhhhhc-cccchhHH--------------------HHHHHHcCcHH
Confidence 8899999999999999999999999999998643321111 00111110 01122345788
Q ss_pred HHHHHHhhcchhHHHHHHHHHHhccCCC
Q 005044 452 HLLYLMRVAEKGVQRRVALALAHLCSPD 479 (717)
Q Consensus 452 ~L~~ll~~~~~~v~~~a~~aL~~l~~~~ 479 (717)
.|..++.++++.++..|..+|.++....
T Consensus 418 ~l~~l~~~~~~~v~~~a~~~l~~~~~~~ 445 (450)
T 2jdq_A 418 KIEFLQSHENQEIYQKAFDLIEHYFGTE 445 (450)
T ss_dssp HHHHHHCHHHHHHHHHHHHHHHHHHCCC
T ss_pred HHHHHHcCCCHHHHHHHHHHHHHHCCcc
Confidence 8999999999999999999999986543
No 24
>2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens}
Probab=99.98 E-value=6.7e-31 Score=293.67 Aligned_cols=393 Identities=20% Similarity=0.207 Sum_probs=329.2
Q ss_pred HHhCCChHHHHHhhcCCCCCccccCCCccchHHHhHHHHHHHHhcCChhhHHHHHhC-CChHHHHHHHhccccCCCccch
Q 005044 100 IVEGGAVPALVKHLQAPPTSEADRNLKPFEHEVEKGSAFALGLLAVKPEHQQLIVDN-GALSHLVNLLKRHMDSNCSRAV 178 (717)
Q Consensus 100 ~~~~g~i~~L~~lL~~~~~~~~~~~~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~-~~i~~L~~lL~~~~~~~~~~~~ 178 (717)
.+..|+++.|+.+|++++. .+|..|+.+|++++.....+..+... |+++.|+..|.+..+.
T Consensus 10 ~~~~g~i~~Lv~lL~~~~~------------~vr~~A~~~L~~La~~~~~~~~i~~~~~~i~~Lv~~L~~~~~~------ 71 (644)
T 2z6h_A 10 ELATRAIPELTKLLNDEDQ------------VVVNKAAVMVHQLSKKEASRHAIMRSPQMVSAIVRTMQNTNDV------ 71 (644)
T ss_dssp --CTTTHHHHHHHHTCSCH------------HHHHHHHHHHHHHHTSTTHHHHHTTCHHHHHHHHHHHHSCCCH------
T ss_pred hhhhchHHHHHHHHcCCCH------------HHHHHHHHHHHHHHCCChhHHHHHhccChHHHHHHHHhcCCCH------
Confidence 4678999999999997655 99999999999999666677666654 8899999999865322
Q ss_pred hHHHHHHHHHHHHHhhcCchhhhHHHhcCCcHHHHHhhcCCCHHHHHHHHHHHHHhhccChhhHHHHHhcCCHHHHHHHH
Q 005044 179 NSVIRRAADAITNLAHENSSIKTRVRMEGGIPPLVELLEFTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILML 258 (717)
Q Consensus 179 ~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~g~i~~L~~ll 258 (717)
+++..|+.+|.+++.. +..+..+.+.|+++.|+.+++++++.++..|+++|.+++.+.+..+..+.+.|+++.|+++|
T Consensus 72 -~~~~~A~~~L~~Ls~~-~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~A~~aL~nL~~~~~~~~~~v~~~g~i~~Lv~lL 149 (644)
T 2z6h_A 72 -ETARCTAGTLHNLSHH-REGLLAIFKSGGIPALVKMLGSPVDSVLFYAITTLHNLLLHQEGAKMAVRLAGGLQKMVALL 149 (644)
T ss_dssp -HHHHHHHHHHHHHTTS-HHHHHHHHTTTHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHSTTHHHHHHHTTHHHHHHHGG
T ss_pred -HHHHHHHHHHHHHhcC-hhhHHHHHHcCCHHHHHHHHhCCCHHHHHHHHHHHHHHHhCcchhHHHHHHCCChHHHHHHH
Confidence 8999999999999984 55888888999999999999999999999999999999987777788888999999999999
Q ss_pred cCCCHHHHHHHHHHHHHhhcCChHHHHHHHHcCChHHHHHhhccCC-hHHHHHHHHHHHHHhcCChhhHHHHHhcCChHH
Q 005044 259 RSEDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLSSCC-SESQREAALLLGQFAATDSDCKVHIVQRGAVRP 337 (717)
Q Consensus 259 ~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~l~~L~~ll~~~~-~~~~~~a~~~L~~l~~~~~~~~~~l~~~~~l~~ 337 (717)
+++++.++..++.+|.+++..++..+..+.+.|+++.|+.++.+.+ ..++..++.+|.+++ .++..+..+.+.|+++.
T Consensus 150 ~~~~~~~~~~a~~~L~~La~~~~~~~~~i~~~g~v~~Lv~lL~~~~~~~~~~~a~~~L~nLs-~~~~~~~~l~~~g~l~~ 228 (644)
T 2z6h_A 150 NKTNVKFLAITTDCLQILAYGNQESKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLS-VCSSNKPAIVEAGGMQA 228 (644)
T ss_dssp GCCCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHTTCCCHHHHHHHHHHHHHHT-TCTTHHHHHHHTTHHHH
T ss_pred CcCCHHHHHHHHHHHHHHHhcCcHHHHHHHHcCChHHHHHHHHcCChHHHHHHHHHHHHHHh-cCcccHHHHHHCCCHHH
Confidence 9999999999999999999888888899999999999999998765 567788999999997 46778888999999999
Q ss_pred HHHHhcCCCHHHHHHHHHHHHHhhcCCCCchhhHhcCChHHHHHhhcCCChhHHHHHHHHHHhccCC-CcchHHHHHhcC
Q 005044 338 LIEMLQSPDVQLREMSAFALGRLAQDMHNQAGIAHNGGLVPLLKLLDSKNGSLQHNAAFALYGLADN-EDNVADFIRVGG 416 (717)
Q Consensus 338 L~~~l~~~~~~v~~~a~~~L~~l~~~~~~~~~l~~~~~l~~L~~ll~~~~~~v~~~a~~~L~~l~~~-~~~~~~l~~~~~ 416 (717)
|+.++.+.+..++..++++|.+|+...... ....++++.|++++.+.++.++..++++|.+|+.. ++++..+.+.|+
T Consensus 229 L~~ll~~~~~~~~~~a~~~L~nL~~~~~~~--~~~~~~i~~Lv~lL~~~d~~v~~~a~~aL~~L~~~~~~~~~~v~~~g~ 306 (644)
T 2z6h_A 229 LGLHLTDPSQRLVQNCLWTLRNLSDAATKQ--EGMEGLLGTLVQLLGSDDINVVTCAAGILSNLTCNNYKNKMMVCQVGG 306 (644)
T ss_dssp HHTTTTCSCHHHHHHHHHHHHHHGGGCTTC--CSCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTH
T ss_pred HHHHHhcCCHHHHHHHHHHHHHHhhcchhh--hhhhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHcCC
Confidence 999999999999999999999999765332 22236789999999999999999999999999875 467888899999
Q ss_pred ccccccchhHH---hhhHHHHHHHHHHHH----------H-HhhhchHHHHHHHHhhcc-hhHHHHHHHHHHhccCCCCC
Q 005044 417 VQKLQDGEFIV---QATKDCVAKTLKRLE----------E-KIHGRVLNHLLYLMRVAE-KGVQRRVALALAHLCSPDDQ 481 (717)
Q Consensus 417 i~~L~~~~~~~---~~~~~~~~~~~~~l~----------~-~~~~~~~~~L~~ll~~~~-~~v~~~a~~aL~~l~~~~~~ 481 (717)
++.|+...... .........++.++. . ....+.++.|+.+|.+++ +.++..++++|+|++.++..
T Consensus 307 v~~Lv~lL~~~~~~~~v~~~a~~aL~nL~~~~~~~~~~q~~v~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nLa~~~~~ 386 (644)
T 2z6h_A 307 IEALVRTVLRAGDREDITEPAICALRHLTSRHQEAEMAQNAVRLHYGLPVVVKLLHPPSHWPLIKATVGLIRNLALCPAN 386 (644)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHTSSSTTHHHHHHHHHHTTHHHHHHHTTSTTCCHHHHHHHHHHHHHHTTSGGG
T ss_pred HHHHHHHHHccCCcHHHHHHHHHHHHHHhcCCchHHHHHHHHHHccChHHHHHHhCccCchHHHHHHHHHHHHHccCHHH
Confidence 99988865543 233344444444442 1 345688999999999875 69999999999999998887
Q ss_pred ceeeecCCCHHHHHHHhcCCCchhhhhhHHHHHH
Q 005044 482 RTIFIDGGGLELLLGLLGSTNPKQQLDGAVALFK 515 (717)
Q Consensus 482 ~~~~~~~~~l~~L~~ll~~~~~~v~~~a~~~l~~ 515 (717)
++.+.+.|+++.|++++.+++.++|..|+|++.|
T Consensus 387 ~~~i~~~~~i~~Lv~lL~~~~~~vr~~a~~al~n 420 (644)
T 2z6h_A 387 HAPLREQGAIPRLVQLLVRAHQDTQRRTSMGGTQ 420 (644)
T ss_dssp HHHHHHTTHHHHHHHHHHHHHHHHTTC-------
T ss_pred HHHHHHcCCHHHHHHHHhccchhhhhHhhhcccc
Confidence 7888899999999999999888899988887766
No 25
>3nmw_A APC variant protein; ARMADIILO repeats domain, cell adhesion-cell cycle complex; 1.60A {Homo sapiens} PDB: 3nmx_A 3t7u_A 3au3_A 3qhe_A
Probab=99.97 E-value=7.3e-30 Score=258.39 Aligned_cols=282 Identities=21% Similarity=0.273 Sum_probs=241.6
Q ss_pred CCccchHHHhHHHHHHHHhcCChhhHHHHHhCCChHHHHHHHhcccc---CCCccchhHHHHHHHHHHHHHhhcCchhhh
Q 005044 125 LKPFEHEVEKGSAFALGLLAVKPEHQQLIVDNGALSHLVNLLKRHMD---SNCSRAVNSVIRRAADAITNLAHENSSIKT 201 (717)
Q Consensus 125 ~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~i~~L~~lL~~~~~---~~~~~~~~~~~~~a~~~L~~l~~~~~~~~~ 201 (717)
|.+.++.+. +|+++|+|++.++++|+.+++.|+++.|+.+|..... ........++++.|+++|.||+..++.++.
T Consensus 42 ~~~~~~~~~-~A~~aL~nls~d~e~R~~i~~~G~l~~Lv~LL~~~~~~~~~~~~~~~~~~q~~Aa~aL~nLa~~~~~~k~ 120 (354)
T 3nmw_A 42 PAPVEHQIC-PAVCVLMKLSFDEEHRHAMNELGGLQAIAELLQVDCEMYGLTNDHYSITLRRYAGMALTNLTFGDVANKA 120 (354)
T ss_dssp CCGGGGTHH-HHHHHHHHHHTSHHHHHHHHHTTHHHHHHHHHHHHHHHHTTSCCHHHHHHHHHHHHHHHHHTSSCHHHHH
T ss_pred CCcchHHHH-HHHHHHHHHcCCHHHHHHHHHcCCHHHHHHHHhcccccccccCCCCCHHHHHHHHHHHHHHHcCCHHHHH
Confidence 455555554 8999999999779999999999999999999964210 000001127999999999999997777887
Q ss_pred HHHhc-CCcHHHHHhhcCCCHHHHHHHHHHHHHhhcc-ChhhHHHHHhcCCHHHHHHH-HcCCCHHHHHHHHHHHHHhhc
Q 005044 202 RVRME-GGIPPLVELLEFTDTKVQRAAAGALRTLAFK-NDENKNQIVECNALPTLILM-LRSEDSAIHYEAVGVIGNLVH 278 (717)
Q Consensus 202 ~~~~~-~~i~~L~~ll~~~~~~v~~~a~~~L~~L~~~-~~~~~~~~~~~g~i~~L~~l-l~~~~~~v~~~a~~~L~~l~~ 278 (717)
.+... |.+|.|+.+|++++++++..|+++|++|+.. ++.++..+.+.|+++.|+++ +++++++++..|+++|++|+.
T Consensus 121 ~i~~~~GaIp~LV~LL~s~~~~v~~~A~~aL~nLs~~~~~~~k~~i~~~G~Ip~Lv~lL~~~~~~~~~~~A~~aL~nLs~ 200 (354)
T 3nmw_A 121 TLCSMKGCMRALVAQLKSESEDLQQVIASVLRNLSWRADVNSKKTLREVGSVKALMECALEVKKESTLKSVLSALWNLSA 200 (354)
T ss_dssp HHHHCHHHHHHHHHGGGCSCHHHHHHHHHHHHHHHTTCCHHHHHHHHHTTHHHHHHHHHHHCCCHHHHHHHHHHHHHHHT
T ss_pred HHHHcCCcHHHHHHHHCCCCHHHHHHHHHHHHHHhccCCHHHHHHHHHCCCHHHHHHHHhcCCCHHHHHHHHHHHHHHHc
Confidence 77554 4599999999999999999999999999974 57789999999999999997 466789999999999999998
Q ss_pred CChHHHHHHH-HcCChHHHHHhhccCCh----HHHHHHHHHHHHHhc---CChhhHHHHHhcCChHHHHHHhcCCCHHHH
Q 005044 279 SSPNIKKEVL-AAGALQPVIGLLSSCCS----ESQREAALLLGQFAA---TDSDCKVHIVQRGAVRPLIEMLQSPDVQLR 350 (717)
Q Consensus 279 ~~~~~~~~~~-~~g~l~~L~~ll~~~~~----~~~~~a~~~L~~l~~---~~~~~~~~l~~~~~l~~L~~~l~~~~~~v~ 350 (717)
..+..+..+. ..|+++.|++++.+.+. ++++.|+++|.|++. .+++.+..+.+.|+++.|+.+|++++..++
T Consensus 201 ~~~~nk~~i~~~~Gai~~Lv~lL~~~~~~~~~~v~~~A~~aL~nLs~~~a~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~ 280 (354)
T 3nmw_A 201 HCTENKADICAVDGALAFLVGTLTYRSQTNTLAIIESGGGILRNVSSLIATNEDHRQILRENNCLQTLLQHLKSHSLTIV 280 (354)
T ss_dssp TCHHHHHHHHHSTTHHHHHHHHTTCCCSSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHTTTHHHHHHHHTTCSCHHHH
T ss_pred cChhhhHHHHHhcCcHHHHHHHhccCCCcccHHHHHHHHHHHHHHHhhccCCHHHHHHHHHcCCHHHHHHHHcCCChHHH
Confidence 6666667776 68999999999987654 589999999999986 578889999999999999999999999999
Q ss_pred HHHHHHHHHhhc-CCCCchhhHhcCChHHHHHhhcCCChhHHHHHHHHHHhccCCCcc
Q 005044 351 EMSAFALGRLAQ-DMHNQAGIAHNGGLVPLLKLLDSKNGSLQHNAAFALYGLADNEDN 407 (717)
Q Consensus 351 ~~a~~~L~~l~~-~~~~~~~l~~~~~l~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~ 407 (717)
+.|+++|+||+. +++++..+++.|++++|++++.+++..+++.|+++|.||+.+.+.
T Consensus 281 ~~A~~aL~nLa~~~~~~~~~i~~~G~i~~Lv~LL~s~~~~i~~~A~~aL~nL~~~~~~ 338 (354)
T 3nmw_A 281 SNACGTLWNLSARNPKDQEALWDMGAVSMLKNLIHSKHKMIAMGSAAALRNLMANRPA 338 (354)
T ss_dssp HHHHHHHHHHTSSCHHHHHHHHHTTHHHHHHTTTTCSSHHHHHHHHHHHHHHHTTCCG
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHcCCHH
Confidence 999999999995 556678899999999999999999999999999999999876443
No 26
>3nmw_A APC variant protein; ARMADIILO repeats domain, cell adhesion-cell cycle complex; 1.60A {Homo sapiens} PDB: 3nmx_A 3t7u_A 3au3_A 3qhe_A
Probab=99.97 E-value=4.2e-29 Score=252.85 Aligned_cols=279 Identities=22% Similarity=0.210 Sum_probs=241.7
Q ss_pred HHHHHHHHHHhhcChhhHHHHHhCCChHHHHHhhcCCCCCccccCCCccchHHHhHHHHHHHHhc-CChhhHHHHHhC-C
Q 005044 80 AKRATHVLAELAKNEEVVNWIVEGGAVPALVKHLQAPPTSEADRNLKPFEHEVEKGSAFALGLLA-VKPEHQQLIVDN-G 157 (717)
Q Consensus 80 ~~~a~~~L~~l~~~~~~~~~~~~~g~i~~L~~lL~~~~~~~~~~~~~~~~~~v~~~a~~~L~~l~-~~~~~~~~~~~~-~ 157 (717)
+..|+++|.+++.++++|..+++.|+++.|+.+|..+.. .........++.++..|+++|.||+ .+++.+..+... |
T Consensus 49 ~~~A~~aL~nls~d~e~R~~i~~~G~l~~Lv~LL~~~~~-~~~~~~~~~~~~~q~~Aa~aL~nLa~~~~~~k~~i~~~~G 127 (354)
T 3nmw_A 49 ICPAVCVLMKLSFDEEHRHAMNELGGLQAIAELLQVDCE-MYGLTNDHYSITLRRYAGMALTNLTFGDVANKATLCSMKG 127 (354)
T ss_dssp HHHHHHHHHHHHTSHHHHHHHHHTTHHHHHHHHHHHHHH-HHTTSCCHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHCHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHcCCHHHHHHHHhcccc-cccccCCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHcCC
Confidence 568999999999999999999999999999999963210 0000011234589999999999999 666788777655 5
Q ss_pred ChHHHHHHHhccccCCCccchhHHHHHHHHHHHHHhhc-CchhhhHHHhcCCcHHHHHhh-cCCCHHHHHHHHHHHHHhh
Q 005044 158 ALSHLVNLLKRHMDSNCSRAVNSVIRRAADAITNLAHE-NSSIKTRVRMEGGIPPLVELL-EFTDTKVQRAAAGALRTLA 235 (717)
Q Consensus 158 ~i~~L~~lL~~~~~~~~~~~~~~~~~~a~~~L~~l~~~-~~~~~~~~~~~~~i~~L~~ll-~~~~~~v~~~a~~~L~~L~ 235 (717)
+++.|+.+|++.+. +++..|+++|.||+.. ++.++..+.+.|++|.|+++| +++++.+++.|+.+|++|+
T Consensus 128 aIp~LV~LL~s~~~--------~v~~~A~~aL~nLs~~~~~~~k~~i~~~G~Ip~Lv~lL~~~~~~~~~~~A~~aL~nLs 199 (354)
T 3nmw_A 128 CMRALVAQLKSESE--------DLQQVIASVLRNLSWRADVNSKKTLREVGSVKALMECALEVKKESTLKSVLSALWNLS 199 (354)
T ss_dssp HHHHHHHGGGCSCH--------HHHHHHHHHHHHHHTTCCHHHHHHHHHTTHHHHHHHHHHHCCCHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHCCCCH--------HHHHHHHHHHHHHhccCCHHHHHHHHHCCCHHHHHHHHhcCCCHHHHHHHHHHHHHHH
Confidence 59999999987665 8999999999999985 567889999999999999975 6678999999999999999
Q ss_pred ccChhhHHHHH-hcCCHHHHHHHHcCCCH----HHHHHHHHHHHHhhc---CChHHHHHHHHcCChHHHHHhhccCChHH
Q 005044 236 FKNDENKNQIV-ECNALPTLILMLRSEDS----AIHYEAVGVIGNLVH---SSPNIKKEVLAAGALQPVIGLLSSCCSES 307 (717)
Q Consensus 236 ~~~~~~~~~~~-~~g~i~~L~~ll~~~~~----~v~~~a~~~L~~l~~---~~~~~~~~~~~~g~l~~L~~ll~~~~~~~ 307 (717)
.+.++++..+. ..|+++.|+++|.++++ +++..|+++|.+++. .+++.++.+.+.|+++.|+++|.+++..+
T Consensus 200 ~~~~~nk~~i~~~~Gai~~Lv~lL~~~~~~~~~~v~~~A~~aL~nLs~~~a~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v 279 (354)
T 3nmw_A 200 AHCTENKADICAVDGALAFLVGTLTYRSQTNTLAIIESGGGILRNVSSLIATNEDHRQILRENNCLQTLLQHLKSHSLTI 279 (354)
T ss_dssp TTCHHHHHHHHHSTTHHHHHHHHTTCCCSSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHTTTHHHHHHHHTTCSCHHH
T ss_pred ccChhhhHHHHHhcCcHHHHHHHhccCCCcccHHHHHHHHHHHHHHHhhccCCHHHHHHHHHcCCHHHHHHHHcCCChHH
Confidence 86777888887 78999999999987654 599999999999986 67888899999999999999999999999
Q ss_pred HHHHHHHHHHHhcCChhhHHHHHhcCChHHHHHHhcCCCHHHHHHHHHHHHHhhcCCCCc
Q 005044 308 QREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQSPDVQLREMSAFALGRLAQDMHNQ 367 (717)
Q Consensus 308 ~~~a~~~L~~l~~~~~~~~~~l~~~~~l~~L~~~l~~~~~~v~~~a~~~L~~l~~~~~~~ 367 (717)
++.|+++|+|++..+++.+..+.+.|+++.|+++++++++.+++.|+++|.||+.+.+.+
T Consensus 280 ~~~A~~aL~nLa~~~~~~~~~i~~~G~i~~Lv~LL~s~~~~i~~~A~~aL~nL~~~~~~~ 339 (354)
T 3nmw_A 280 VSNACGTLWNLSARNPKDQEALWDMGAVSMLKNLIHSKHKMIAMGSAAALRNLMANRPAK 339 (354)
T ss_dssp HHHHHHHHHHHTSSCHHHHHHHHHTTHHHHHHTTTTCSSHHHHHHHHHHHHHHHTTCCGG
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHcCCHHH
Confidence 999999999998778899999999999999999999999999999999999999875543
No 27
>3hve_A Gigaxonin; ubiquitin, cytoplasm, cytoskeleton, disease mutation, kelch repeat, neurodegeneration, phosphoprotein, polymorphism, UBL conjugation; 2.80A {Homo sapiens} PDB: 3hve_B
Probab=99.95 E-value=3.5e-28 Score=237.19 Aligned_cols=160 Identities=21% Similarity=0.346 Sum_probs=142.1
Q ss_pred HHhhcCCCCccEEEEEcCeEeehhHHHHhhccHHHHHhhcCCCC--CCCCcceEcCCCCHHHHHHHHHHHhcCccccchh
Q 005044 541 DQFVNNATLSDVTFLVEGRRFYAHRICLLASSDAFRAMFDGGYR--EKDARDIEIPNIRWEVFELMMRFIYTGSVDVTLD 618 (717)
Q Consensus 541 ~~~~~~~~~~Dv~~~~~~~~~~~h~~il~~~s~~f~~~~~~~~~--e~~~~~i~l~~~~~~~~~~~l~~~Yt~~~~~~~~ 618 (717)
++++.++.++||++.++|..|++||.||+++|+||++||.+++. |+....|.++++++++|+.+++|+|||.+.++.+
T Consensus 23 ~~l~~~~~~~Dv~l~v~~~~f~~Hr~vLaa~S~yF~~mf~~~~~~~e~~~~~i~l~~v~~~~f~~ll~~~Yt~~~~i~~~ 102 (256)
T 3hve_A 23 SSFREESRFCDAHLVLDGEEIPVQKNILAAASPYIRTKLNYNPPKDDGSTYKIELEGISVMVMREILDYIFSGQIRLNED 102 (256)
T ss_dssp HTCCC--CCCCEEEEETTEEEEECHHHHHTTCHHHHHTC-----------CEEECSSCCHHHHHHHHHHHHHSCCCCC-C
T ss_pred HHHHhcCCCcceEEEECCEEEechHHHHHHcCHHHHHHhCCCCCcccCCCCeEEeCCCCHHHHHHHHhhccCCCCcccHh
Confidence 66788999999999999999999999999999999999999887 6777899999999999999999999999999999
Q ss_pred hHHHHHHHHHhhChHhHHHHHHHHHHhcCChhcHHHHHHHHHHcCcHHHHHHHHHHHHHhHHHhcCCchhhhchhhcHHH
Q 005044 619 IAQDLLRAADQYLLEGLKRLCEYTIAQDISLENVSSMYELSEAFHAISLRHTCILYIMEHFDKLSTRPGHSNLIQRIIPE 698 (717)
Q Consensus 619 ~~~~ll~~A~~~~~~~l~~~c~~~l~~~i~~~n~~~~~~~a~~~~~~~L~~~~~~~i~~~~~~~~~~~~f~~l~~~~~~~ 698 (717)
++.+++.+|++|+++.|+..|+.++.+.++++||+.++.+|+.|+++.|.+.|.+||.+||.++.++++|.+|+.+.+.+
T Consensus 103 ~v~~ll~~A~~l~i~~l~~~c~~~L~~~l~~~n~~~i~~~A~~~~~~~L~~~~~~~i~~~f~~v~~~~~f~~L~~~~l~~ 182 (256)
T 3hve_A 103 TIQDVVQAADLLLLTDLKTLCCEFLEGCIAAENCIGIRDFALHYCLHHVHYLATEYLETHFRDVSSTEEFLELSPQKLKE 182 (256)
T ss_dssp CHHHHHHHHHHHTCHHHHHHHHHHHHHTCCSSTTHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTTCHHHHSSCHHHHHH
T ss_pred HHHHHHHHHHHHChHHHHHHHHHHHHhhCCHhhHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHhCCcchhcCCHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999997665555
Q ss_pred HH
Q 005044 699 IH 700 (717)
Q Consensus 699 l~ 700 (717)
++
T Consensus 183 lL 184 (256)
T 3hve_A 183 VI 184 (256)
T ss_dssp HH
T ss_pred HH
Confidence 54
No 28
>3htm_A Speckle-type POZ protein; BTB, SPOP, ubiquitin, ligase, nucleus, UBL conjugation pathway, protein binding; 2.50A {Homo sapiens}
Probab=99.95 E-value=9.4e-28 Score=219.41 Aligned_cols=147 Identities=34% Similarity=0.522 Sum_probs=136.6
Q ss_pred HHhhcCCCCccEEEEEcCeEeehhHHHHhhccHHHHHhhcCCCCCCCCcceEcCCCCHHHHHHHHHHHhcCccccchhhH
Q 005044 541 DQFVNNATLSDVTFLVEGRRFYAHRICLLASSDAFRAMFDGGYREKDARDIEIPNIRWEVFELMMRFIYTGSVDVTLDIA 620 (717)
Q Consensus 541 ~~~~~~~~~~Dv~~~~~~~~~~~h~~il~~~s~~f~~~~~~~~~e~~~~~i~l~~~~~~~~~~~l~~~Yt~~~~~~~~~~ 620 (717)
.+++.++.++||++.++|+.|++||.||+++|+||++||.++|.|+.+..|.++++++++|+.+|+|+|||.++++.+++
T Consensus 26 ~~l~~~~~~~Dv~l~v~~~~~~~Hk~iL~~~S~~F~~~f~~~~~e~~~~~i~l~~~~~~~f~~~l~~~Yt~~~~~~~~~~ 105 (172)
T 3htm_A 26 GGLWENSRFTDCCLCVAGQEFQAHKAILAARSPVFSAMFEHEMEESKKNRVEINDVEPEVFKEMMCFIYTGKAPNLDKMA 105 (172)
T ss_dssp HHHHHHTCSCCEEEEETTEEEEECHHHHHHHCHHHHHHHHSCCCGGGTTEEEECSSCHHHHHHHHHHHHHSCCTTGGGTH
T ss_pred HHHHhCCCCcceEEEECCEEEEeeHHHHHHcCHHHHHHHccCccccCCCeEEecCCCHHHHHHHHHHHhCCCCCCcHHHH
Confidence 67889999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhhChHhHHHHHHHHHHhcCChhcHHHHHHHHHHcCcHHHHHHHHHHHHHhHHHhcCCch
Q 005044 621 QDLLRAADQYLLEGLKRLCEYTIAQDISLENVSSMYELSEAFHAISLRHTCILYIMEHFDKLSTRPG 687 (717)
Q Consensus 621 ~~ll~~A~~~~~~~l~~~c~~~l~~~i~~~n~~~~~~~a~~~~~~~L~~~~~~~i~~~~~~~~~~~~ 687 (717)
.+++.+|++|+++.|+..|++++.+.++.+||+.++.+|..|+++.|++.|.+||.+||.++.++++
T Consensus 106 ~~ll~~A~~~~~~~l~~~c~~~l~~~l~~~n~~~~~~~A~~~~~~~L~~~~~~~i~~~~~~v~~s~~ 172 (172)
T 3htm_A 106 DDLLAAADKYALERLKVMCEDALCSNLSVENAAEILILADLHSADQLKTQAVDFINYHATDVLETSG 172 (172)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHTCCTTTHHHHHHHHHHTTCHHHHHHHHHHHHHTC--------
T ss_pred HHHHHHHHHhCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHcCCC
Confidence 9999999999999999999999999999999999999999999999999999999999999988764
No 29
>3i3n_A Kelch-like protein 11; structural genomics, BTB, KLHL11A, SGC, structural genomics consortium, kelch repeat, secreted, protein binding; 2.60A {Homo sapiens} PDB: 4ap2_A* 4apf_A
Probab=99.95 E-value=7.9e-28 Score=237.75 Aligned_cols=159 Identities=23% Similarity=0.408 Sum_probs=143.8
Q ss_pred HHhhcCCCCccEEEEEc---CeEeehhHHHHhhccHHHHHhhcCCCCCCCCcceEcC------CCCHHHHHHHHHHHhcC
Q 005044 541 DQFVNNATLSDVTFLVE---GRRFYAHRICLLASSDAFRAMFDGGYREKDARDIEIP------NIRWEVFELMMRFIYTG 611 (717)
Q Consensus 541 ~~~~~~~~~~Dv~~~~~---~~~~~~h~~il~~~s~~f~~~~~~~~~e~~~~~i~l~------~~~~~~~~~~l~~~Yt~ 611 (717)
++++.++.++||++.++ |..|++||.||+++|+||++||.++|+|+.+..|.++ ++++++|+.+++|+|||
T Consensus 24 ~~l~~~~~~~Dv~l~v~~~~~~~f~~Hr~vLaa~S~yF~~mf~~~~~e~~~~~i~l~~~~~~~~v~~~~f~~ll~~~Ytg 103 (279)
T 3i3n_A 24 NEQRRQGLFCDITLCFGGAGGREFRAHRSVLAAATEYFTPLLSGQFSESRSGRVEMRKWSSEPGPEPDTVEAVIEYMYTG 103 (279)
T ss_dssp HHHHHHTTTCCEEEECC----CEEEECHHHHHHHCTTSGGGCCC--------EEECCCCSSTTCSCHHHHHHHHHHHHHS
T ss_pred HHHHhcCCCCCeEEEEcCCCCeEEehHHHHHHHcCHHHHHHhcCCCccccCCeEEeccccccCCCCHHHHHHHHHhhCcC
Confidence 67889999999999998 8999999999999999999999999999999999998 89999999999999999
Q ss_pred ccccchhhHHHHHHHHHhhChHhHHHHHHHHHHhcCChhcHHHHHHHHHHcCcHHHHHHHHHHHHHhHHHhcCCchhhhc
Q 005044 612 SVDVTLDIAQDLLRAADQYLLEGLKRLCEYTIAQDISLENVSSMYELSEAFHAISLRHTCILYIMEHFDKLSTRPGHSNL 691 (717)
Q Consensus 612 ~~~~~~~~~~~ll~~A~~~~~~~l~~~c~~~l~~~i~~~n~~~~~~~a~~~~~~~L~~~~~~~i~~~~~~~~~~~~f~~l 691 (717)
.+.++.+++.+++.+|++|+++.|+..|+.++.+.++++||+.++.+|+.|+++.|.+.|.+||.+||.++.++++|.+|
T Consensus 104 ~~~i~~~~v~~ll~~A~~l~i~~L~~~c~~~L~~~l~~~n~~~i~~~A~~~~~~~L~~~~~~~i~~~f~~v~~~~~f~~L 183 (279)
T 3i3n_A 104 RIRVSTGSVHEVLELADRFLLIRLKEFCGEFLKKKLHLSNCVAIHSLAHMYTLSQLALKAADMIRRNFHKVIQDEEFYTL 183 (279)
T ss_dssp EEEEETTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCCTTTHHHHHHHHHHTTCHHHHHHHHHHHHHTHHHHTTSSGGGGS
T ss_pred CcccCHHHHHHHHHHHHHHCcHHHHHHHHHHHHHcCCcchHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHhcCcChhcC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhcHHHH
Q 005044 692 IQRIIPEI 699 (717)
Q Consensus 692 ~~~~~~~l 699 (717)
+.+.+.++
T Consensus 184 ~~~~l~~l 191 (279)
T 3i3n_A 184 PFHLIRDW 191 (279)
T ss_dssp CHHHHHHH
T ss_pred CHHHHHHH
Confidence 66654444
No 30
>4hxt_A De novo protein OR329; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 1.95A {Artificial gene}
Probab=99.94 E-value=2e-25 Score=219.03 Aligned_cols=243 Identities=31% Similarity=0.380 Sum_probs=228.0
Q ss_pred CChHHHHHhhcCCCCCccccCCCccchHHHhHHHHHHHHhc-CChhhHHHHHhCCChHHHHHHHhccccCCCccchhHHH
Q 005044 104 GAVPALVKHLQAPPTSEADRNLKPFEHEVEKGSAFALGLLA-VKPEHQQLIVDNGALSHLVNLLKRHMDSNCSRAVNSVI 182 (717)
Q Consensus 104 g~i~~L~~lL~~~~~~~~~~~~~~~~~~v~~~a~~~L~~l~-~~~~~~~~~~~~~~i~~L~~lL~~~~~~~~~~~~~~~~ 182 (717)
|++|.|+++|++++. +++..|+++|.+++ ..++.+..+.+.|+++.|+.+|++.+. +++
T Consensus 2 ~~i~~L~~~L~~~~~------------~~~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~~--------~v~ 61 (252)
T 4hxt_A 2 NDVEKLVKLLTSTDS------------ETQKEAARDLAEIASGPASAIKAIVDAGGVEVLVKLLTSTDS--------EVQ 61 (252)
T ss_dssp CHHHHHHHHTTCSCH------------HHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTCSCH--------HHH
T ss_pred CcHHHHHHHHcCCCH------------HHHHHHHHHHHHHhcCCcHHHHHHHHCCCHHHHHHHHhCCCH--------HHH
Confidence 578999999998765 99999999999999 777799999999999999999998765 999
Q ss_pred HHHHHHHHHHhhcCchhhhHHHhcCCcHHHHHhhcCCCHHHHHHHHHHHHHhhccChhhHHHHHhcCCHHHHHHHHcCCC
Q 005044 183 RRAADAITNLAHENSSIKTRVRMEGGIPPLVELLEFTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSED 262 (717)
Q Consensus 183 ~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~g~i~~L~~ll~~~~ 262 (717)
..++++|.+++..++..+..+.+.|+++.|+.+++++++.++..++++|.+++..+++.+..+.+.|+++.|++++++++
T Consensus 62 ~~a~~~L~~l~~~~~~~~~~~~~~~~i~~l~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~l~~~~ 141 (252)
T 4hxt_A 62 KEAARALANIASGPDEAIKAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIASGPDEAIKAIVDAGGVEVLVKLLTSTD 141 (252)
T ss_dssp HHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTTCSSHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTTCSC
T ss_pred HHHHHHHHHHHcCChHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHcCCC
Confidence 99999999999987999999999999999999999999999999999999999778899999999999999999999999
Q ss_pred HHHHHHHHHHHHHhhcCChHHHHHHHHcCChHHHHHhhccCChHHHHHHHHHHHHHhcCChhhHHHHHhcCChHHHHHHh
Q 005044 263 SAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLSSCCSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEML 342 (717)
Q Consensus 263 ~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~l~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~l~~~~~l~~L~~~l 342 (717)
+.++..++++|++++..++.....+.+.|+++.|+.++.++++.++..++++|++++..++.....+.+.|+++.|+.++
T Consensus 142 ~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~~~i~~L~~ll 221 (252)
T 4hxt_A 142 SEVQKEAARALANIASGPDEAIKAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIASGPTSAIKAIVDAGGVEVLQKLL 221 (252)
T ss_dssp HHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSBHHHHHHHHHTTHHHHHHHGG
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHCcCHHHHHHHHCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHH
Confidence 99999999999999988888888999999999999999999999999999999999987888888899999999999999
Q ss_pred cCCCHHHHHHHHHHHHHhhcCCCC
Q 005044 343 QSPDVQLREMSAFALGRLAQDMHN 366 (717)
Q Consensus 343 ~~~~~~v~~~a~~~L~~l~~~~~~ 366 (717)
+++++.++..|+++|.||+.....
T Consensus 222 ~~~~~~v~~~a~~~L~~l~~~~~~ 245 (252)
T 4hxt_A 222 TSTDSEVQKEAQRALENIKSGGWL 245 (252)
T ss_dssp GCSCHHHHHHHHHHHHHHHHTCBC
T ss_pred CCCcHHHHHHHHHHHHHHHcCCCc
Confidence 999999999999999999976544
No 31
>4hxt_A De novo protein OR329; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 1.95A {Artificial gene}
Probab=99.93 E-value=7.3e-25 Score=215.06 Aligned_cols=242 Identities=30% Similarity=0.391 Sum_probs=224.7
Q ss_pred CChHHHHHHHhccccCCCccchhHHHHHHHHHHHHHhhcCchhhhHHHhcCCcHHHHHhhcCCCHHHHHHHHHHHHHhhc
Q 005044 157 GALSHLVNLLKRHMDSNCSRAVNSVIRRAADAITNLAHENSSIKTRVRMEGGIPPLVELLEFTDTKVQRAAAGALRTLAF 236 (717)
Q Consensus 157 ~~i~~L~~lL~~~~~~~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~L~~ 236 (717)
|.++.|+.+|++.+. +++..|+++|.+++..++..+..+.+.|+++.|+.+++++++.++..++++|.+++.
T Consensus 2 ~~i~~L~~~L~~~~~--------~~~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~v~~~a~~~L~~l~~ 73 (252)
T 4hxt_A 2 NDVEKLVKLLTSTDS--------ETQKEAARDLAEIASGPASAIKAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIAS 73 (252)
T ss_dssp CHHHHHHHHTTCSCH--------HHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTT
T ss_pred CcHHHHHHHHcCCCH--------HHHHHHHHHHHHHhcCCcHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHc
Confidence 568999999988765 899999999999999888888899999999999999999999999999999999998
Q ss_pred cChhhHHHHHhcCCHHHHHHHHcCCCHHHHHHHHHHHHHhhcCChHHHHHHHHcCChHHHHHhhccCChHHHHHHHHHHH
Q 005044 237 KNDENKNQIVECNALPTLILMLRSEDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLSSCCSESQREAALLLG 316 (717)
Q Consensus 237 ~~~~~~~~~~~~g~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~l~~L~~ll~~~~~~~~~~a~~~L~ 316 (717)
++++.+..+.+.|+++.|+.++++++++++..|+++|++++..++..+..+.+.|+++.|++++.++++.++..++++|+
T Consensus 74 ~~~~~~~~~~~~~~i~~l~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~l~~~~~~~~~~a~~~L~ 153 (252)
T 4hxt_A 74 GPDEAIKAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIASGPDEAIKAIVDAGGVEVLVKLLTSTDSEVQKEAARALA 153 (252)
T ss_dssp SCHHHHHHHHHTTHHHHHHHHTTCSSHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHH
T ss_pred CChHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHH
Confidence 77999999999999999999999999999999999999999888888899999999999999999999999999999999
Q ss_pred HHhcCChhhHHHHHhcCChHHHHHHhcCCCHHHHHHHHHHHHHhhcCC-CCchhhHhcCChHHHHHhhcCCChhHHHHHH
Q 005044 317 QFAATDSDCKVHIVQRGAVRPLIEMLQSPDVQLREMSAFALGRLAQDM-HNQAGIAHNGGLVPLLKLLDSKNGSLQHNAA 395 (717)
Q Consensus 317 ~l~~~~~~~~~~l~~~~~l~~L~~~l~~~~~~v~~~a~~~L~~l~~~~-~~~~~l~~~~~l~~L~~ll~~~~~~v~~~a~ 395 (717)
+++...+.....+.+.|+++.|+.++.++++.++..++++|.+++... .....+.+.|+++.|++++.++++.++..|+
T Consensus 154 ~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~ 233 (252)
T 4hxt_A 154 NIASGPDEAIKAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIASGPTSAIKAIVDAGGVEVLQKLLTSTDSEVQKEAQ 233 (252)
T ss_dssp HHTTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSBHHHHHHHHHTTHHHHHHHGGGCSCHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHCcCHHHHHHHHCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHCCCcHHHHHHHH
Confidence 999888888888999999999999999999999999999999999844 3456788899999999999999999999999
Q ss_pred HHHHhccCCCc
Q 005044 396 FALYGLADNED 406 (717)
Q Consensus 396 ~~L~~l~~~~~ 406 (717)
++|.||+....
T Consensus 234 ~~L~~l~~~~~ 244 (252)
T 4hxt_A 234 RALENIKSGGW 244 (252)
T ss_dssp HHHHHHHHTCB
T ss_pred HHHHHHHcCCC
Confidence 99999986543
No 32
>4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct}
Probab=99.93 E-value=1.5e-24 Score=212.63 Aligned_cols=239 Identities=24% Similarity=0.351 Sum_probs=220.5
Q ss_pred CChHHHHHhhcCCCCCccccCCCccchHHHhHHHHHHHHhc-CChhhHHHHHhCCChHHHHHHHhccccCCCccchhHHH
Q 005044 104 GAVPALVKHLQAPPTSEADRNLKPFEHEVEKGSAFALGLLA-VKPEHQQLIVDNGALSHLVNLLKRHMDSNCSRAVNSVI 182 (717)
Q Consensus 104 g~i~~L~~lL~~~~~~~~~~~~~~~~~~v~~~a~~~L~~l~-~~~~~~~~~~~~~~i~~L~~lL~~~~~~~~~~~~~~~~ 182 (717)
...+.++.+|++++. +++..|+++|.++. ..++.+..+.+.|+++.|+.+|++.+. +++
T Consensus 12 ~~~~~~~~~L~s~~~------------~~~~~a~~~L~~~l~~~~~~~~~~~~~g~i~~L~~lL~~~~~--------~v~ 71 (252)
T 4db8_A 12 SELPQMTQQLNSDDM------------QEQLSATRKFSQILSDGNEQIQAVIDAGALPALVQLLSSPNE--------QIL 71 (252)
T ss_dssp CSHHHHHHHHHSSCS------------SHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHGGGCSCH--------HHH
T ss_pred chHHHHHHHHcCCCH------------HHHHHHHHHHHHHHcCCCchHHHHHHcCcHHHHHHHHcCCCH--------HHH
Confidence 357889999999887 99999999998766 677788899999999999999998765 899
Q ss_pred HHHHHHHHHHhhcCchhhhHHHhcCCcHHHHHhhcCCCHHHHHHHHHHHHHhhccChhhHHHHHhcCCHHHHHHHHcCCC
Q 005044 183 RRAADAITNLAHENSSIKTRVRMEGGIPPLVELLEFTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSED 262 (717)
Q Consensus 183 ~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~g~i~~L~~ll~~~~ 262 (717)
..++++|.+++..++..+..+.+.|+++.|+.+++++++.++..|+++|.+++.+.+.....+.+.|+++.|++++++++
T Consensus 72 ~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~lL~~~~ 151 (252)
T 4db8_A 72 QEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPN 151 (252)
T ss_dssp HHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHGGGCSC
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHhhcCCchHHHHHHHCCCHHHHHHHHhCCC
Confidence 99999999999988899999999999999999999999999999999999999854444488999999999999999999
Q ss_pred HHHHHHHHHHHHHhhcCChHHHHHHHHcCChHHHHHhhccCChHHHHHHHHHHHHHhcCChhhHHHHHhcCChHHHHHHh
Q 005044 263 SAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLSSCCSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEML 342 (717)
Q Consensus 263 ~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~l~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~l~~~~~l~~L~~~l 342 (717)
+.++..++++|++++..++.....+.+.|+++.|+.++.++++.++..++++|++++..++.....+.+.|+++.|+.++
T Consensus 152 ~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll 231 (252)
T 4db8_A 152 EQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQKQAVKEAGALEKLEQLQ 231 (252)
T ss_dssp HHHHHHHHHHHHHHTTSCHHHHHHHHHTTCHHHHHHGGGCSSHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHTTT
T ss_pred HHHHHHHHHHHHHHHcCChHHHHHHHHCCCHHHHHHHHCCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHCCcHHHHHHHh
Confidence 99999999999999988888888889999999999999999999999999999999988888888899999999999999
Q ss_pred cCCCHHHHHHHHHHHHHhhc
Q 005044 343 QSPDVQLREMSAFALGRLAQ 362 (717)
Q Consensus 343 ~~~~~~v~~~a~~~L~~l~~ 362 (717)
.++++.++..|+++|.||+.
T Consensus 232 ~~~~~~v~~~A~~~L~~l~~ 251 (252)
T 4db8_A 232 SHENEKIQKEAQEALEKLQS 251 (252)
T ss_dssp TCSSSHHHHTHHHHHHTTC-
T ss_pred CCCCHHHHHHHHHHHHHHhc
Confidence 99999999999999999975
No 33
>4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct}
Probab=99.93 E-value=2.4e-24 Score=211.29 Aligned_cols=239 Identities=24% Similarity=0.340 Sum_probs=218.8
Q ss_pred CChHHHHHHHhccccCCCccchhHHHHHHHHHHHHHhhcCchhhhHHHhcCCcHHHHHhhcCCCHHHHHHHHHHHHHhhc
Q 005044 157 GALSHLVNLLKRHMDSNCSRAVNSVIRRAADAITNLAHENSSIKTRVRMEGGIPPLVELLEFTDTKVQRAAAGALRTLAF 236 (717)
Q Consensus 157 ~~i~~L~~lL~~~~~~~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~L~~ 236 (717)
...+.+...|.+.+. +++..|+++|.++...++..+..+.+.|+++.|+.+++++++.++..|+++|.+++.
T Consensus 12 ~~~~~~~~~L~s~~~--------~~~~~a~~~L~~~l~~~~~~~~~~~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~ 83 (252)
T 4db8_A 12 SELPQMTQQLNSDDM--------QEQLSATRKFSQILSDGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIAS 83 (252)
T ss_dssp CSHHHHHHHHHSSCS--------SHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHTT
T ss_pred chHHHHHHHHcCCCH--------HHHHHHHHHHHHHHcCCCchHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHHHhc
Confidence 457889999998877 899999999988766567777888999999999999999999999999999999998
Q ss_pred cChhhHHHHHhcCCHHHHHHHHcCCCHHHHHHHHHHHHHhhcCChHHHHHHHHcCChHHHHHhhccCChHHHHHHHHHHH
Q 005044 237 KNDENKNQIVECNALPTLILMLRSEDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLSSCCSESQREAALLLG 316 (717)
Q Consensus 237 ~~~~~~~~~~~~g~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~l~~L~~ll~~~~~~~~~~a~~~L~ 316 (717)
++++++..+.+.|+++.|+.+|+++++.++..|+++|++++...+.....+.+.|+++.|+.++.++++.++..++++|+
T Consensus 84 ~~~~~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~~L~ 163 (252)
T 4db8_A 84 GGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALS 163 (252)
T ss_dssp SCHHHHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHhhcCCchHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHH
Confidence 88999999999999999999999999999999999999999877665588899999999999999999999999999999
Q ss_pred HHhcCChhhHHHHHhcCChHHHHHHhcCCCHHHHHHHHHHHHHhhcCC-CCchhhHhcCChHHHHHhhcCCChhHHHHHH
Q 005044 317 QFAATDSDCKVHIVQRGAVRPLIEMLQSPDVQLREMSAFALGRLAQDM-HNQAGIAHNGGLVPLLKLLDSKNGSLQHNAA 395 (717)
Q Consensus 317 ~l~~~~~~~~~~l~~~~~l~~L~~~l~~~~~~v~~~a~~~L~~l~~~~-~~~~~l~~~~~l~~L~~ll~~~~~~v~~~a~ 395 (717)
+++..++.....+.+.|+++.|+.++.++++.++..++++|++++... ..+..+.+.|+++.|++++.++++.++..|+
T Consensus 164 ~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~v~~~A~ 243 (252)
T 4db8_A 164 NIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQKQAVKEAGALEKLEQLQSHENEKIQKEAQ 243 (252)
T ss_dssp HHTTSCHHHHHHHHHTTCHHHHHHGGGCSSHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHTTTTCSSSHHHHTHH
T ss_pred HHHcCChHHHHHHHHCCCHHHHHHHHCCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHCCcHHHHHHHhCCCCHHHHHHHH
Confidence 999888888888899999999999999999999999999999999644 4456788889999999999999999999999
Q ss_pred HHHHhccC
Q 005044 396 FALYGLAD 403 (717)
Q Consensus 396 ~~L~~l~~ 403 (717)
++|.+|+.
T Consensus 244 ~~L~~l~~ 251 (252)
T 4db8_A 244 EALEKLQS 251 (252)
T ss_dssp HHHHTTC-
T ss_pred HHHHHHhc
Confidence 99999974
No 34
>3hqi_A Speckle-type POZ protein; SPOP, ubiquitin, puckered, nucleus, UBL conjugation pathway, protein binding, ligase; 2.62A {Homo sapiens} PDB: 3hu6_A
Probab=99.92 E-value=8.5e-25 Score=220.18 Aligned_cols=147 Identities=34% Similarity=0.522 Sum_probs=131.1
Q ss_pred HHhhcCCCCccEEEEEcCeEeehhHHHHhhccHHHHHhhcCCCCCCCCcceEcCCCCHHHHHHHHHHHhcCccccchhhH
Q 005044 541 DQFVNNATLSDVTFLVEGRRFYAHRICLLASSDAFRAMFDGGYREKDARDIEIPNIRWEVFELMMRFIYTGSVDVTLDIA 620 (717)
Q Consensus 541 ~~~~~~~~~~Dv~~~~~~~~~~~h~~il~~~s~~f~~~~~~~~~e~~~~~i~l~~~~~~~~~~~l~~~Yt~~~~~~~~~~ 620 (717)
.+++.++.++||++.++|+.|++||.||+++|+||++||.++|.|+....|.++++++++|+.+|+|+|||.+++..+++
T Consensus 166 ~~l~~~~~~~Dv~l~v~~~~f~~Hk~vLaa~S~~F~~~f~~~~~e~~~~~i~l~~~~~~~f~~~L~~iYt~~~~~~~~~~ 245 (312)
T 3hqi_A 166 GGLWENSRFTDCCLCVAGQEFQAHKAILAARSPVFSAMFEHEMEESKKNRVEINDVEPEVFKEMMCFIYTGKAPNLDKMA 245 (312)
T ss_dssp HHHHHTTCSCCEEEEETTEEEEECHHHHHHHCHHHHHHTTC-----CCSEEEECSSCHHHHHHHHHHHHHSCCTTHHHHH
T ss_pred HHHHhCCCCCceEEEECCEEEeHHHHHHHHcCHHHHHHhccCccccCCceEEecCCCHHHHHHHHHhhcCCCCCChHHHH
Confidence 56778999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhhChHhHHHHHHHHHHhcCChhcHHHHHHHHHHcCcHHHHHHHHHHHHHhHHHhcCCch
Q 005044 621 QDLLRAADQYLLEGLKRLCEYTIAQDISLENVSSMYELSEAFHAISLRHTCILYIMEHFDKLSTRPG 687 (717)
Q Consensus 621 ~~ll~~A~~~~~~~l~~~c~~~l~~~i~~~n~~~~~~~a~~~~~~~L~~~~~~~i~~~~~~~~~~~~ 687 (717)
.+++.+|++|+++.|+..|+++|.+.++.+||..++.+|+.|++..|++.|++||.+||.++.++++
T Consensus 246 ~~ll~~A~~~~~~~l~~~c~~~l~~~~~~~n~~~~l~~A~~~~~~~L~~~~~~~i~~~~~~v~~s~g 312 (312)
T 3hqi_A 246 DDLLAAADKYALERLKVMCEDALCSNLSVENAAEILILADLHSADQLKTQAVDFINYHATDVLETSG 312 (312)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHTTCCTTTHHHHHHHHHHTTCHHHHHHHHHHHHHTC--------
T ss_pred HHHHHHHHHhCHHHHHHHHHHHHHccCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhhCCC
Confidence 9999999999999999999999999999999999999999999999999999999999999988764
No 35
>3opb_A SWI5-dependent HO expression protein 4; heat and arm fold, myosin folding and function, myosin bindi protein, protein binding; 2.90A {Saccharomyces cerevisiae}
Probab=99.91 E-value=9.7e-24 Score=226.81 Aligned_cols=384 Identities=16% Similarity=0.144 Sum_probs=291.8
Q ss_pred HHHHHHHHHHhhcChhhHHHHHhCCChHHHHHhhcCCCCCccccCCCccchHHHhHHHHHHHHhcCChhhH-HHHHhCCC
Q 005044 80 AKRATHVLAELAKNEEVVNWIVEGGAVPALVKHLQAPPTSEADRNLKPFEHEVEKGSAFALGLLAVKPEHQ-QLIVDNGA 158 (717)
Q Consensus 80 ~~~a~~~L~~l~~~~~~~~~~~~~g~i~~L~~lL~~~~~~~~~~~~~~~~~~v~~~a~~~L~~l~~~~~~~-~~~~~~~~ 158 (717)
....++.|...|.++..|..+ ..+.++.|.++++. . .++..|+-+|.++...+... ..+. ..
T Consensus 273 ~~a~L~lLsaACi~~~cR~~I-~~~~~~~L~~~l~~--~------------~ir~lAavvL~KL~~~~~~~~~si~--~L 335 (778)
T 3opb_A 273 TKELLRLLSSACIDETMRTYI-TENYLQLLERSLNV--E------------DVQIYSALVLVKTWSFTKLTCINLK--QL 335 (778)
T ss_dssp HHHHHHHHHHHCCSHHHHHHH-HHHHHHHHHHHTTS--G------------GGHHHHHHHHHHHTGGGTCTTCCHH--HH
T ss_pred HHHHHHHHHHHhCCcHHHHHH-HHhHHHHHHHHhcc--H------------HHHHHHHHHHHHHhcCCCCCcCcHH--HH
Confidence 344455555555577776666 56778999999864 2 78889999999988322211 1111 13
Q ss_pred hHHHHHHHhccccCCCccchhHHHHHHHHHHHHHhhcCchhhhHHHhc-CCcHHHHHhhcC-CCHHHHHHHHHHHHHhhc
Q 005044 159 LSHLVNLLKRHMDSNCSRAVNSVIRRAADAITNLAHENSSIKTRVRME-GGIPPLVELLEF-TDTKVQRAAAGALRTLAF 236 (717)
Q Consensus 159 i~~L~~lL~~~~~~~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~-~~i~~L~~ll~~-~~~~v~~~a~~~L~~L~~ 236 (717)
.+.+.+.|.+... +-+..|+..|..++. ++..+..++.. +.++.|+.+++. .+..+...++.+|.|++.
T Consensus 336 a~~~~~~L~~~~~--------~~~~~AvEgLaYLSl-~~~VKe~L~~d~~~L~~Lv~llk~~~d~s~~Ygal~IL~NLt~ 406 (778)
T 3opb_A 336 SEIFINAISRRIV--------PKVEMSVEALAYLSL-KASVKIMIRSNESFTEILLTMIKSQKMTHCLYGLLVIMANLST 406 (778)
T ss_dssp HHHHHHHTTTCCH--------HHHHHHHHHHHHHTT-SSHHHHHHHHCHHHHHHHHHHHTTTCCTTHHHHHHHHHHHTTC
T ss_pred HHHHHHHHhcCCc--------cHHHHHHHHHHHHhC-CHHHHHHHHhCHHHHHHHHHHHhCCCCchHHHHHHHHHHHhcC
Confidence 4555566655433 458999999999998 66777777764 558999999985 677899999999999997
Q ss_pred cChh--------------------------------------hHHHHHhcCCHHHHHHHHcCCCHHHHHHHHHHHHHhhc
Q 005044 237 KNDE--------------------------------------NKNQIVECNALPTLILMLRSEDSAIHYEAVGVIGNLVH 278 (717)
Q Consensus 237 ~~~~--------------------------------------~~~~~~~~g~i~~L~~ll~~~~~~v~~~a~~~L~~l~~ 278 (717)
..+. ++..+.+.|+++.|+.+++++++.++..++++|.+++.
T Consensus 407 ~~~~~~~e~~~l~~Lk~~A~~~~p~~~~~d~~~~~~~~v~~~~~~~l~eaGvIp~Lv~Ll~S~s~~~re~A~~aL~nLS~ 486 (778)
T 3opb_A 407 LPEEXXXXXXXXXXXXXXXXXXXPAADKVGAEKAAKEDILLFNEKYILRTELISFLKREMHNLSPNCKQQVVRIIYNITR 486 (778)
T ss_dssp CCCCCCCCCC------------------CCTHHHHHHHHHHHHHHHTTTTTHHHHHHHHGGGSCHHHHHHHHHHHHHHHT
T ss_pred CCcccchhhhhhhhhhhhccccCcccCcccccccchHHHHHHHHHHHHHCcCHHHHHHHHcCCCHHHHHHHHHHHHHHcC
Confidence 4321 34556788999999999999999999999999999975
Q ss_pred CChHHHHHHHHcCChHHHHHhhccCChH---HHHHHHHHHHHHhcC-ChhhHHHHHh---cCChHHHHHHhcC-CCH---
Q 005044 279 SSPNIKKEVLAAGALQPVIGLLSSCCSE---SQREAALLLGQFAAT-DSDCKVHIVQ---RGAVRPLIEMLQS-PDV--- 347 (717)
Q Consensus 279 ~~~~~~~~~~~~g~l~~L~~ll~~~~~~---~~~~a~~~L~~l~~~-~~~~~~~l~~---~~~l~~L~~~l~~-~~~--- 347 (717)
. +..+..+++.|+++.|+.++.+.... .+..|+.+|.++... ++.. .+.. .|+++.|+.+|.. +..
T Consensus 487 d-~~~R~~lvqqGal~~LL~lL~s~~~~~~~~k~~AA~ALArLlis~np~~--~f~~~~~~~aI~pLv~LL~~~~~~~~~ 563 (778)
T 3opb_A 487 S-KNFIPQLAQQGAVKIILEYLANKQDIGEPIRILGCRALTRMLIFTNPGL--IFKKYSALNAIPFLFELLPRSTPVDDN 563 (778)
T ss_dssp S-GGGHHHHHHTTHHHHHHHHTTCC---CCHHHHHHHHHHHHHHHTSCHHH--HSSSSCSTTHHHHHHHTSCCSSSCSSC
T ss_pred C-HHHHHHHHHCCCHHHHHHHHhcCCCcchHHHHHHHHHHHHHHhcCCHHH--HcCCCccccchHHHHHHcCCCCCcccc
Confidence 4 78889999999999999999887644 799999999999843 3332 1211 3899999999983 211
Q ss_pred ----------HHHHHHHHHHHHhhcCCCC-----chhhHhc-CChHHHHHhhcCCChhHHHHHHHHHHhccCCCcch-HH
Q 005044 348 ----------QLREMSAFALGRLAQDMHN-----QAGIAHN-GGLVPLLKLLDSKNGSLQHNAAFALYGLADNEDNV-AD 410 (717)
Q Consensus 348 ----------~v~~~a~~~L~~l~~~~~~-----~~~l~~~-~~l~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~-~~ 410 (717)
--+..|+.+|.||+..+.+ +..++.. |+++.|.+++.+++..+++.|+++++||+.+++.. ..
T Consensus 564 ~l~~~~~~~~l~~feAL~ALTNLAs~~~n~~E~~r~~Ii~~~ga~~~L~~LL~s~n~~VrrAA~elI~NL~~~~e~i~~k 643 (778)
T 3opb_A 564 PLHNDEQIKLTDNYEALLALTNLASSETSDGEEVCKHIVSTKVYWSTIENLMLDENVPLQRSTLELISNMMSHPLTIAAK 643 (778)
T ss_dssp C---CCCCCHHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHSHHHHHHHHHGGGCSSHHHHHHHHHHHHHHHTSGGGTGGG
T ss_pred cccccccccHHHHHHHHHHHHHHhcCCcccchHHHHHHHHhcCHHHHHHHHHhCCCHHHHHHHHHHHHHHhCCcHHHHHH
Confidence 2267899999999997643 5667885 99999999999999999999999999999876653 23
Q ss_pred HHHhcCccccccchhHHhhhHHHHHHHHHHHHHHhhhchHHHHHHHHhhcchhHHHHHHHHHHhccC-CCCCceeeecC-
Q 005044 411 FIRVGGVQKLQDGEFIVQATKDCVAKTLKRLEEKIHGRVLNHLLYLMRVAEKGVQRRVALALAHLCS-PDDQRTIFIDG- 488 (717)
Q Consensus 411 l~~~~~i~~L~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~L~~ll~~~~~~v~~~a~~aL~~l~~-~~~~~~~~~~~- 488 (717)
+...+. + ...+-++.|+.++++++.++|.+|+++|.+++. .+...+.+++.
T Consensus 644 ~~~~~~-~--------------------------~~~~rL~lLV~Ll~s~D~~~r~AAagALAnLts~~~~ia~~ll~~~ 696 (778)
T 3opb_A 644 FFNLEN-P--------------------------QSLRNFNILVKLLQLSDVESQRAVAAIFANIATTIPLIAKELLTKK 696 (778)
T ss_dssp TSCCSS-H--------------------------HHHHHHHHHHHGGGCSCHHHHHHHHHHHHHHHHHCHHHHHHHTTCH
T ss_pred HHhhcC-c--------------------------hhhccHHHHHHHHcCCCHHHHHHHHHHHHHhcCCChHHHHHHHHcc
Confidence 322110 0 001137789999999999999999999999964 44455556665
Q ss_pred CCHHHHHHHhcC--CCchhhhhhHHHHHHhhhc
Q 005044 489 GGLELLLGLLGS--TNPKQQLDGAVALFKLANK 519 (717)
Q Consensus 489 ~~l~~L~~ll~~--~~~~v~~~a~~~l~~L~~~ 519 (717)
++++.++.++.+ ++++++..++.++.||+..
T Consensus 697 ~gi~~Ll~lL~~~~~~~~l~~R~~~~l~NL~~~ 729 (778)
T 3opb_A 697 ELIENAIQVFADQIDDIELRQRLLMLFFGLFEV 729 (778)
T ss_dssp HHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHTT
T ss_pred ccHHHHHHHHhccCCCHHHHHHHHHHHHHHHHh
Confidence 799999999998 8999999999999999973
No 36
>4eoz_A Speckle-type POZ protein; E3 ubiquitin ligase, nucleus, protein binding; 2.40A {Homo sapiens}
Probab=99.91 E-value=7.2e-25 Score=193.93 Aligned_cols=129 Identities=36% Similarity=0.558 Sum_probs=99.3
Q ss_pred HHhhcCCCCccEEEEEcCeEeehhHHHHhhccHHHHHhhcCCCCCCCCcceEcCCCCHHHHHHHHHHHhcCccccchhhH
Q 005044 541 DQFVNNATLSDVTFLVEGRRFYAHRICLLASSDAFRAMFDGGYREKDARDIEIPNIRWEVFELMMRFIYTGSVDVTLDIA 620 (717)
Q Consensus 541 ~~~~~~~~~~Dv~~~~~~~~~~~h~~il~~~s~~f~~~~~~~~~e~~~~~i~l~~~~~~~~~~~l~~~Yt~~~~~~~~~~ 620 (717)
.+++.++.++||++.++|+.|++||.||+++|+||++||.++|.|+.+..|.++++++++|+.+++|+|||.++++.+++
T Consensus 17 ~~l~~~~~~~Dv~l~v~~~~~~~Hk~iL~~~S~~F~~~f~~~~~e~~~~~i~l~~~~~~~~~~~l~~~Y~~~~~~~~~~~ 96 (145)
T 4eoz_A 17 GGLWENSRFTDCCLCVAGQEFQAHKAILAARSPVFSAMFEHEMEESKKNRVEINDVEPEVFKEMMCFIYTGKAPNLDKMA 96 (145)
T ss_dssp HHHHHHTCSCCEEEEETTEEEEECHHHHHHHCHHHHHHHHSSSHHHHHTEEEECSSCHHHHHHHHHHHHHSCCTTGGGTH
T ss_pred HHHHhCCCCcceEEEECCEEEEeehHHHHHcCHHHHHHHcCCCcCCCCceEEecCCCHHHHHHHHHhhccCccCCcHHHH
Confidence 67889999999999999999999999999999999999999999988889999999999999999999999999999999
Q ss_pred HHHHHHHHhhChHhHHHHHHHHHHhcCChhcHHHHHHHHHHcCcHHHHH
Q 005044 621 QDLLRAADQYLLEGLKRLCEYTIAQDISLENVSSMYELSEAFHAISLRH 669 (717)
Q Consensus 621 ~~ll~~A~~~~~~~l~~~c~~~l~~~i~~~n~~~~~~~a~~~~~~~L~~ 669 (717)
.+++.+|++|+++.|+..|++++.+.++.+||+.++.+|+.|++++|++
T Consensus 97 ~~ll~~A~~~~~~~l~~~c~~~l~~~l~~~n~~~~l~~A~~~~~~~Lk~ 145 (145)
T 4eoz_A 97 DDLLAAADKYALERLKVMCEDALCSNLSVENAAEILILADLHSADQLKT 145 (145)
T ss_dssp HHHHHHHHHTTCHHHHHHHHCC---------------------------
T ss_pred HHHHHHHHHhCHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCHHHhcC
Confidence 9999999999999999999999999999999999999999999998864
No 37
>3opb_A SWI5-dependent HO expression protein 4; heat and arm fold, myosin folding and function, myosin bindi protein, protein binding; 2.90A {Saccharomyces cerevisiae}
Probab=99.91 E-value=4e-22 Score=214.31 Aligned_cols=382 Identities=15% Similarity=0.110 Sum_probs=293.4
Q ss_pred HHHHHHHHHHhhc-ChhhHHHHH-hCCChHHHHHhhcCCCCCccccCCCccchHHHhHHHHHHHHhcCChhhHHHHHhCC
Q 005044 80 AKRATHVLAELAK-NEEVVNWIV-EGGAVPALVKHLQAPPTSEADRNLKPFEHEVEKGSAFALGLLAVKPEHQQLIVDNG 157 (717)
Q Consensus 80 ~~~a~~~L~~l~~-~~~~~~~~~-~~g~i~~L~~lL~~~~~~~~~~~~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~ 157 (717)
...++.++..+.- .|+.+..+. ..|..+.+.+.+..... ..+...+++.|...|.+..+|..+. .+
T Consensus 229 ~~~~~~~l~~lfPi~p~~~s~lfl~e~~~~~l~~~~~~~~~-----------~~~~~a~L~lLsaACi~~~cR~~I~-~~ 296 (778)
T 3opb_A 229 LSIIVKTLSELYPSLTTLCSEIFLTKGLSKLFKKRVFEEQD-----------LQFTKELLRLLSSACIDETMRTYIT-EN 296 (778)
T ss_dssp HHHHHHHHHHHTTTTHHHHHHHHSTTTHHHHHHHHHHSSCC-----------HHHHHHHHHHHHHHCCSHHHHHHHH-HH
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHccccHHHHHHHHHhcccc-----------hHHHHHHHHHHHHHhCCcHHHHHHH-Hh
Confidence 4666777777766 566666554 67888999988865432 2677788888888889999988885 46
Q ss_pred ChHHHHHHHhccccCCCccchhHHHHHHHHHHHHHhhcCchhhhHHHhcCCcHHHHHhhcCCCHHHHHHHHHHHHHhhcc
Q 005044 158 ALSHLVNLLKRHMDSNCSRAVNSVIRRAADAITNLAHENSSIKTRVRMEGGIPPLVELLEFTDTKVQRAAAGALRTLAFK 237 (717)
Q Consensus 158 ~i~~L~~lL~~~~~~~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~L~~~ 237 (717)
+++.|..+++.. .++..|+-+|..+..........+. ...+.+.+++.+++.+-+..|++.|.+++.
T Consensus 297 ~~~~L~~~l~~~----------~ir~lAavvL~KL~~~~~~~~~si~--~La~~~~~~L~~~~~~~~~~AvEgLaYLSl- 363 (778)
T 3opb_A 297 YLQLLERSLNVE----------DVQIYSALVLVKTWSFTKLTCINLK--QLSEIFINAISRRIVPKVEMSVEALAYLSL- 363 (778)
T ss_dssp HHHHHHHHTTSG----------GGHHHHHHHHHHHTGGGTCTTCCHH--HHHHHHHHHTTTCCHHHHHHHHHHHHHHTT-
T ss_pred HHHHHHHHhccH----------HHHHHHHHHHHHHhcCCCCCcCcHH--HHHHHHHHHHhcCCccHHHHHHHHHHHHhC-
Confidence 679999888652 7788899999888764332221111 245677777877776679999999999997
Q ss_pred ChhhHHHHHh-cCCHHHHHHHHcC-CCHHHHHHHHHHHHHhhcCChH---------------------------------
Q 005044 238 NDENKNQIVE-CNALPTLILMLRS-EDSAIHYEAVGVIGNLVHSSPN--------------------------------- 282 (717)
Q Consensus 238 ~~~~~~~~~~-~g~i~~L~~ll~~-~~~~v~~~a~~~L~~l~~~~~~--------------------------------- 282 (717)
+++.+..+++ .|+++.|+.++++ ++..+...++.+|.|++...+.
T Consensus 364 ~~~VKe~L~~d~~~L~~Lv~llk~~~d~s~~Ygal~IL~NLt~~~~~~~~e~~~l~~Lk~~A~~~~p~~~~~d~~~~~~~ 443 (778)
T 3opb_A 364 KASVKIMIRSNESFTEILLTMIKSQKMTHCLYGLLVIMANLSTLPEEXXXXXXXXXXXXXXXXXXXPAADKVGAEKAAKE 443 (778)
T ss_dssp SSHHHHHHHHCHHHHHHHHHHHTTTCCTTHHHHHHHHHHHTTCCCCCCCCCCC------------------CCTHHHHHH
T ss_pred CHHHHHHHHhCHHHHHHHHHHHhCCCCchHHHHHHHHHHHhcCCCcccchhhhhhhhhhhhccccCcccCcccccccchH
Confidence 6777777776 4669999999995 7788999999999999864321
Q ss_pred -----HHHHHHHcCChHHHHHhhccCChHHHHHHHHHHHHHhcCChhhHHHHHhcCChHHHHHHhcCCCHH---HHHHHH
Q 005044 283 -----IKKEVLAAGALQPVIGLLSSCCSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQSPDVQ---LREMSA 354 (717)
Q Consensus 283 -----~~~~~~~~g~l~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~l~~~~~l~~L~~~l~~~~~~---v~~~a~ 354 (717)
.+..+.+.|+++.|+.++.++++.++..++++|.|++ .++.++..+++.|+++.|+.++.+.... .+..|+
T Consensus 444 ~v~~~~~~~l~eaGvIp~Lv~Ll~S~s~~~re~A~~aL~nLS-~d~~~R~~lvqqGal~~LL~lL~s~~~~~~~~k~~AA 522 (778)
T 3opb_A 444 DILLFNEKYILRTELISFLKREMHNLSPNCKQQVVRIIYNIT-RSKNFIPQLAQQGAVKIILEYLANKQDIGEPIRILGC 522 (778)
T ss_dssp HHHHHHHHHTTTTTHHHHHHHHGGGSCHHHHHHHHHHHHHHH-TSGGGHHHHHHTTHHHHHHHHTTCC---CCHHHHHHH
T ss_pred HHHHHHHHHHHHCcCHHHHHHHHcCCCHHHHHHHHHHHHHHc-CCHHHHHHHHHCCCHHHHHHHHhcCCCcchHHHHHHH
Confidence 3456678899999999999999999999999999997 5688999999999999999999886544 899999
Q ss_pred HHHHHhhcCCCCchhhH---hcCChHHHHHhhcC-CCh-------------hHHHHHHHHHHhccCCCcc-----hHHHH
Q 005044 355 FALGRLAQDMHNQAGIA---HNGGLVPLLKLLDS-KNG-------------SLQHNAAFALYGLADNEDN-----VADFI 412 (717)
Q Consensus 355 ~~L~~l~~~~~~~~~l~---~~~~l~~L~~ll~~-~~~-------------~v~~~a~~~L~~l~~~~~~-----~~~l~ 412 (717)
.+|.+|+....+...+. ..+++++|+++|.. ... .-+..|+.+|.||+..+++ +..++
T Consensus 523 ~ALArLlis~np~~~f~~~~~~~aI~pLv~LL~~~~~~~~~~l~~~~~~~~l~~feAL~ALTNLAs~~~n~~E~~r~~Ii 602 (778)
T 3opb_A 523 RALTRMLIFTNPGLIFKKYSALNAIPFLFELLPRSTPVDDNPLHNDEQIKLTDNYEALLALTNLASSETSDGEEVCKHIV 602 (778)
T ss_dssp HHHHHHHHTSCHHHHSSSSCSTTHHHHHHHTSCCSSSCSSCC---CCCCCHHHHHHHHHHHHHHHHCCSHHHHHHHHHHH
T ss_pred HHHHHHHhcCCHHHHcCCCccccchHHHHHHcCCCCCcccccccccccccHHHHHHHHHHHHHHhcCCcccchHHHHHHH
Confidence 99999996543322221 13889999999983 111 1267899999999887632 33344
Q ss_pred HhcCccccccchhHHhhhHHHHHHHHHHHHHHhhhchHHHHHHHHhhcchhHHHHHHHHHHhccCCCCCc-eeeecCC--
Q 005044 413 RVGGVQKLQDGEFIVQATKDCVAKTLKRLEEKIHGRVLNHLLYLMRVAEKGVQRRVALALAHLCSPDDQR-TIFIDGG-- 489 (717)
Q Consensus 413 ~~~~i~~L~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~-~~~~~~~-- 489 (717)
+. .++++.|..+|.+++..+|..|+++++|++.++... +.+...+
T Consensus 603 ~~--------------------------------~ga~~~L~~LL~s~n~~VrrAA~elI~NL~~~~e~i~~k~~~~~~~ 650 (778)
T 3opb_A 603 ST--------------------------------KVYWSTIENLMLDENVPLQRSTLELISNMMSHPLTIAAKFFNLENP 650 (778)
T ss_dssp HS--------------------------------HHHHHHHHHGGGCSSHHHHHHHHHHHHHHHTSGGGTGGGTSCCSSH
T ss_pred Hh--------------------------------cCHHHHHHHHHhCCCHHHHHHHHHHHHHHhCCcHHHHHHHHhhcCc
Confidence 42 247888999999999999999999999999887753 2332222
Q ss_pred ----CHHHHHHHhcCCCchhhhhhHHHHHHhhhc
Q 005044 490 ----GLELLLGLLGSTNPKQQLDGAVALFKLANK 519 (717)
Q Consensus 490 ----~l~~L~~ll~~~~~~v~~~a~~~l~~L~~~ 519 (717)
.++.|+.++.+++.++|..|+++|.+++..
T Consensus 651 ~~~~rL~lLV~Ll~s~D~~~r~AAagALAnLts~ 684 (778)
T 3opb_A 651 QSLRNFNILVKLLQLSDVESQRAVAAIFANIATT 684 (778)
T ss_dssp HHHHHHHHHHHGGGCSCHHHHHHHHHHHHHHHHH
T ss_pred hhhccHHHHHHHHcCCCHHHHHHHHHHHHHhcCC
Confidence 378999999999999999999999999753
No 38
>4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A
Probab=99.89 E-value=5e-22 Score=188.69 Aligned_cols=199 Identities=26% Similarity=0.372 Sum_probs=185.2
Q ss_pred hcCCcHHHHHhhcCCCHHHHHHHHHHHHHhhccChhhHHHHHhcCCHHHHHHHHcCCCHHHHHHHHHHHHHhhcCChHHH
Q 005044 205 MEGGIPPLVELLEFTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSEDSAIHYEAVGVIGNLVHSSPNIK 284 (717)
Q Consensus 205 ~~~~i~~L~~ll~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~ 284 (717)
..+..+.|+.+++++++.++..|+++|.+++..+++.+..+.+.|+++.|+++|+++++.++..|+++|++++..++..+
T Consensus 10 ~~~~~~~l~~LL~s~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~ 89 (210)
T 4db6_A 10 HGSELPQMVQQLNSPDQQELQSALRKLSQIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQI 89 (210)
T ss_dssp ---CHHHHHHHTTCSCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHH
T ss_pred ccchhHHHHHHhcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCcHHH
Confidence 45678999999999999999999999999998788999999999999999999999999999999999999998888888
Q ss_pred HHHHHcCChHHHHHhhccCChHHHHHHHHHHHHHhcCChhhHHHHHhcCChHHHHHHhcCCCHHHHHHHHHHHHHhhcC-
Q 005044 285 KEVLAAGALQPVIGLLSSCCSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQSPDVQLREMSAFALGRLAQD- 363 (717)
Q Consensus 285 ~~~~~~g~l~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~l~~~~~l~~L~~~l~~~~~~v~~~a~~~L~~l~~~- 363 (717)
..+.+.|+++.|+.++.++++.++..|+++|+|++..++.....+.+.|+++.|+.+++++++.++..++++|.+++..
T Consensus 90 ~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~~ 169 (210)
T 4db6_A 90 QAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGG 169 (210)
T ss_dssp HHHHHTTCHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTSC
T ss_pred HHHHHCCCHHHHHHHHcCCcHHHHHHHHHHHHHHHcCCHHHHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHHHHcCC
Confidence 9999999999999999999999999999999999988888888899999999999999999999999999999999986
Q ss_pred CCCchhhHhcCChHHHHHhhcCCChhHHHHHHHHHHhccC
Q 005044 364 MHNQAGIAHNGGLVPLLKLLDSKNGSLQHNAAFALYGLAD 403 (717)
Q Consensus 364 ~~~~~~l~~~~~l~~L~~ll~~~~~~v~~~a~~~L~~l~~ 403 (717)
+..+..+.+.|+++.|++++.++++.+++.|+++|.+|+.
T Consensus 170 ~~~~~~~~~~g~i~~L~~ll~~~~~~v~~~a~~aL~~l~~ 209 (210)
T 4db6_A 170 NEQKQAVKEAGALEKLEQLQSHENEKIQKEAQEALEKLQS 209 (210)
T ss_dssp HHHHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHCC
T ss_pred cHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHhc
Confidence 4556778888999999999999999999999999999975
No 39
>4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A
Probab=99.89 E-value=1.4e-21 Score=185.62 Aligned_cols=200 Identities=24% Similarity=0.336 Sum_probs=186.9
Q ss_pred hCCChHHHHHHHhccccCCCccchhHHHHHHHHHHHHHhhcCchhhhHHHhcCCcHHHHHhhcCCCHHHHHHHHHHHHHh
Q 005044 155 DNGALSHLVNLLKRHMDSNCSRAVNSVIRRAADAITNLAHENSSIKTRVRMEGGIPPLVELLEFTDTKVQRAAAGALRTL 234 (717)
Q Consensus 155 ~~~~i~~L~~lL~~~~~~~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~L 234 (717)
..+..+.|..+|++.+. +++..|+++|.+++..++..+..+.+.|+++.|+.+|+++++.++..|+++|.++
T Consensus 10 ~~~~~~~l~~LL~s~~~--------~v~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l 81 (210)
T 4db6_A 10 HGSELPQMVQQLNSPDQ--------QELQSALRKLSQIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNI 81 (210)
T ss_dssp ---CHHHHHHHTTCSCH--------HHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHH
T ss_pred ccchhHHHHHHhcCCCH--------HHHHHHHHHHHHHHcCCHHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHH
Confidence 35778999999988766 9999999999999988888888999999999999999999999999999999999
Q ss_pred hccChhhHHHHHhcCCHHHHHHHHcCCCHHHHHHHHHHHHHhhcCChHHHHHHHHcCChHHHHHhhccCChHHHHHHHHH
Q 005044 235 AFKNDENKNQIVECNALPTLILMLRSEDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLSSCCSESQREAALL 314 (717)
Q Consensus 235 ~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~l~~L~~ll~~~~~~~~~~a~~~ 314 (717)
+.+++..+..+.+.|+++.|+.+|+++++.++..|+++|++++..++.....+.+.|+++.|++++.+++..++..++++
T Consensus 82 ~~~~~~~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~a 161 (210)
T 4db6_A 82 ASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWA 161 (210)
T ss_dssp TTSCHHHHHHHHHTTCHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHH
T ss_pred hcCCcHHHHHHHHCCCHHHHHHHHcCCcHHHHHHHHHHHHHHHcCCHHHHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHH
Confidence 98788999999999999999999999999999999999999998888888889999999999999999999999999999
Q ss_pred HHHHhcCChhhHHHHHhcCChHHHHHHhcCCCHHHHHHHHHHHHHhhc
Q 005044 315 LGQFAATDSDCKVHIVQRGAVRPLIEMLQSPDVQLREMSAFALGRLAQ 362 (717)
Q Consensus 315 L~~l~~~~~~~~~~l~~~~~l~~L~~~l~~~~~~v~~~a~~~L~~l~~ 362 (717)
|.+++..++..+..+.+.|+++.|+.++.++++.+++.|+++|.+|+.
T Consensus 162 L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~v~~~a~~aL~~l~~ 209 (210)
T 4db6_A 162 LSNIASGGNEQKQAVKEAGALEKLEQLQSHENEKIQKEAQEALEKLQS 209 (210)
T ss_dssp HHHHHTSCHHHHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHCC
T ss_pred HHHHHcCCcHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHhc
Confidence 999998878888899999999999999999999999999999999975
No 40
>2vkp_A BTB/POZ domain-containing protein 6; protein-binding; 1.9A {Homo sapiens}
Probab=99.87 E-value=3.2e-22 Score=166.82 Aligned_cols=104 Identities=29% Similarity=0.551 Sum_probs=93.9
Q ss_pred hhcCCCCccEEEEEcC----eEeehhHHHHhhccHHHHHhhcCCCCCCCCcceEcCCCCHHHHHHHHHHHhcCccccchh
Q 005044 543 FVNNATLSDVTFLVEG----RRFYAHRICLLASSDAFRAMFDGGYREKDARDIEIPNIRWEVFELMMRFIYTGSVDVTLD 618 (717)
Q Consensus 543 ~~~~~~~~Dv~~~~~~----~~~~~h~~il~~~s~~f~~~~~~~~~e~~~~~i~l~~~~~~~~~~~l~~~Yt~~~~~~~~ 618 (717)
++.++.++||++.+++ ..|++||.||+++|+||++||.++|.|+. ..|.++++++++|+.+++|+|||.++++.+
T Consensus 2 l~~~~~~~Dv~l~v~~~~~~~~~~~Hk~iLa~~S~~F~~~f~~~~~e~~-~~i~l~~~~~~~f~~~l~~iYt~~~~~~~~ 80 (109)
T 2vkp_A 2 MFNNELMADVHFVVGPPGATRTVPAHKYVLAVGSSVFYAMFYGDLAEVK-SEIHIPDVEPAAFLILLKYMYSDEIDLEAD 80 (109)
T ss_dssp CTTCCTTCCEEEEESSTTSCEEEEECHHHHHHHCHHHHHHHC------C-CEEEETTSCHHHHHHHHHHHHHCCCCCCTT
T ss_pred cccCCCcccEEEEECCCCCcEEEEeeHHHHHHcCHHHHHHhcCCcccCC-CeEEeCCCCHHHHHHHHHHHcCCCccCCHH
Confidence 5678899999999998 89999999999999999999999999988 899999999999999999999999999999
Q ss_pred hHHHHHHHHHhhChHhHHHHHHHHHHhcC
Q 005044 619 IAQDLLRAADQYLLEGLKRLCEYTIAQDI 647 (717)
Q Consensus 619 ~~~~ll~~A~~~~~~~l~~~c~~~l~~~i 647 (717)
++.+++.+|++|+++.|+..|+++|.+++
T Consensus 81 ~~~~ll~~A~~~~~~~L~~~c~~~l~~~l 109 (109)
T 2vkp_A 81 TVLATLYAAKKYIVPALAKACVNFLETSL 109 (109)
T ss_dssp THHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHhCcHHHHHHHHHHHHhhC
Confidence 99999999999999999999999998754
No 41
>1xqr_A HSPBP1 protein; armadillo repeat, superhelical twist, chaperone; 2.10A {Homo sapiens} SCOP: a.118.1.21 PDB: 1xqs_A*
Probab=99.87 E-value=2.9e-20 Score=182.81 Aligned_cols=209 Identities=22% Similarity=0.253 Sum_probs=181.6
Q ss_pred HHHHHHHhhhhhccccc------hHHHHHHHHHHHHHHHHhhcChhhHHHHHhCCChHHHHH-hhcCCCCCccccCCCcc
Q 005044 56 LSEVSAQVNVLNTTFSW------LEADRAAAKRATHVLAELAKNEEVVNWIVEGGAVPALVK-HLQAPPTSEADRNLKPF 128 (717)
Q Consensus 56 ~~~i~~l~~~L~~~~~~------~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~g~i~~L~~-lL~~~~~~~~~~~~~~~ 128 (717)
...++..+.+|.+.... .+.+...+..|+..|.+++.+.++...+.+.|++|.|+. +|.+++.
T Consensus 27 ~~~mk~~l~vl~~~~~~~~~~~~~~~~~e~k~~Al~~L~~lv~~~dna~~~~~~G~l~~Lv~~lL~s~~~---------- 96 (296)
T 1xqr_A 27 VEQMKSCLRVLSQPMPPTAGEAEQAADQQEREGALELLADLCENMDNAADFCQLSGMHLLVGRYLEAGAA---------- 96 (296)
T ss_dssp HHHHHHHHHHHHSCCCSSCCHHHHHHHHHHHHHHHHHHHHHHTSHHHHHHHHHTTHHHHHHHTTTTCSSH----------
T ss_pred HHHHHHHHHHHhCCCcccccccccCCCHHHHHHHHHHHHHHHhChhhHHHHHHcCCHHHHHHHHHcCCCH----------
Confidence 44455666666653110 023344689999999999998888899999999999999 9987766
Q ss_pred chHHHhHHHHHHHHhc-CChhhHHHHHhCCChHHHHHHHhccccCCCccchhHHHHHHHHHHHHHhhcCchhhhHHHhcC
Q 005044 129 EHEVEKGSAFALGLLA-VKPEHQQLIVDNGALSHLVNLLKRHMDSNCSRAVNSVIRRAADAITNLAHENSSIKTRVRMEG 207 (717)
Q Consensus 129 ~~~v~~~a~~~L~~l~-~~~~~~~~~~~~~~i~~L~~lL~~~~~~~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~ 207 (717)
.++..|+++|++++ +++.++..+++.|+++.|+.+|++..+. .+++.|+|+|++++.+++.....+...|
T Consensus 97 --~vr~~Aa~~Lg~ia~~n~~~~~~vv~~g~l~~Ll~LL~~~~~~-------~v~~~A~~ALsnl~~~~~~~~~~~~~~g 167 (296)
T 1xqr_A 97 --GLRWRAAQLIGTCSQNVAAIQEQVLGLGALRKLLRLLDRDACD-------TVRVKALFAISCLVREQEAGLLQFLRLD 167 (296)
T ss_dssp --HHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHHCSCH-------HHHHHHHHHHHHHHTTCHHHHHHHHHTT
T ss_pred --HHHHHHHHHHHHHHhCCHHHHHHHHHCCCHHHHHHHHccCCCH-------HHHHHHHHHHHHHHcCCcHHHHHHHHCC
Confidence 99999999999999 8899999999999999999999864221 8999999999999998888787888899
Q ss_pred CcHHHHHhhcCCCHHHHHHHHHHHHHhhccChhhHHHHHhcCCHHHHHHHHcCCCHHHHHHHHHHHHHhhcCChHH
Q 005044 208 GIPPLVELLEFTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSEDSAIHYEAVGVIGNLVHSSPNI 283 (717)
Q Consensus 208 ~i~~L~~ll~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~ 283 (717)
+++.|+.+|++++..++..|+|+|.+++.++++.+..+++.|+++.|+.+|.++++.++..++++|++++...+..
T Consensus 168 gi~~L~~lL~~~d~~v~~~A~~aLs~L~~~~~~~~~~vv~~g~i~~Lv~LL~~~d~~v~~~al~aL~~l~~~~~~~ 243 (296)
T 1xqr_A 168 GFSVLMRAMQQQVQKLKVKSAFLLQNLLVGHPEHKGTLCSMGMVQQLVALVRTEHSPFHEHVLGALCSLVTDFPQG 243 (296)
T ss_dssp HHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHTTHHHHHHHHHTSCCSTHHHHHHHHHHHHHTTCHHH
T ss_pred CHHHHHHHHcCCCHHHHHHHHHHHHHHHhCChHHHHHHHHcCCHHHHHHHHcCCChhHHHHHHHHHHHHHhCChhH
Confidence 9999999999999999999999999999888899999999999999999999999999999999999998875543
No 42
>2if5_A Zinc finger and BTB domain-containing protein 7A; POZ domain, POK, proto oncogene, transcription F transcription; 2.00A {Homo sapiens} PDB: 2nn2_A
Probab=99.86 E-value=9.6e-22 Score=166.90 Aligned_cols=103 Identities=29% Similarity=0.441 Sum_probs=95.3
Q ss_pred HHhhcCCCCccEEEEEcCeEeehhHHHHhhccHHHHHhhcCCCCCCCCcceEcCCCCHHHHHHHHHHHhcCccccchhhH
Q 005044 541 DQFVNNATLSDVTFLVEGRRFYAHRICLLASSDAFRAMFDGGYREKDARDIEIPNIRWEVFELMMRFIYTGSVDVTLDIA 620 (717)
Q Consensus 541 ~~~~~~~~~~Dv~~~~~~~~~~~h~~il~~~s~~f~~~~~~~~~e~~~~~i~l~~~~~~~~~~~l~~~Yt~~~~~~~~~~ 620 (717)
++++.++.++||++.++|+.|++||.||+++|+||++||.++|.|+....|.++++++++|+.+++|+|||.+.++.+++
T Consensus 17 ~~l~~~~~~~Dv~l~v~~~~~~aHk~vLaa~S~~F~~~f~~~~~e~~~~~i~l~~~~~~~f~~ll~~~Yt~~~~~~~~~~ 96 (120)
T 2if5_A 17 NEQRTQGLLCDVVILVEGREFPTHRSVLAACSQYFKKLFTSGAVVDQQNVYEIDFVSAEALTALMDFAYTATLTVSTANV 96 (120)
T ss_dssp HHHHHTTCSCCEEEEETTEEEEECHHHHHHHCHHHHHHHHC-----CCSEEECCSSCHHHHHHHHHHHHHSCCCCCGGGH
T ss_pred HHHHhcCCCCCeEEEECCEEEeHHHHHHHHhCHHHHHHhcCCccccCCceEEeCCCCHHHHHHHHHHHcCCCCccCHHHH
Confidence 56888999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhhChHhHHHHHHHHH
Q 005044 621 QDLLRAADQYLLEGLKRLCEYTI 643 (717)
Q Consensus 621 ~~ll~~A~~~~~~~l~~~c~~~l 643 (717)
.+++.+|++|+++.|++.|+++|
T Consensus 97 ~~ll~~A~~~~i~~L~~~C~~~L 119 (120)
T 2if5_A 97 GDILSAARLLEIPAVSHVCADLL 119 (120)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCHHHHHHHHHHh
Confidence 99999999999999999999987
No 43
>1r29_A B-cell lymphoma 6 protein; BTB domain, transcriptional repression, transcription; 1.30A {Homo sapiens} SCOP: d.42.1.1 PDB: 1r28_A 1r2b_A 3bim_A 3lbz_A* 3e4u_A
Probab=99.86 E-value=2.3e-21 Score=166.31 Aligned_cols=105 Identities=23% Similarity=0.421 Sum_probs=100.6
Q ss_pred HHhhcCCCCccEEEEEcCeEeehhHHHHhhccHHHHHhhcCCCCCCCCcceEc-CCCCHHHHHHHHHHHhcCccccchhh
Q 005044 541 DQFVNNATLSDVTFLVEGRRFYAHRICLLASSDAFRAMFDGGYREKDARDIEI-PNIRWEVFELMMRFIYTGSVDVTLDI 619 (717)
Q Consensus 541 ~~~~~~~~~~Dv~~~~~~~~~~~h~~il~~~s~~f~~~~~~~~~e~~~~~i~l-~~~~~~~~~~~l~~~Yt~~~~~~~~~ 619 (717)
++++.++.++||++.++|+.|++||.||+++|+||++||.++|.| ....|.+ +++++++|+.+++|+|||.+.++.++
T Consensus 21 ~~l~~~~~~~Dv~l~v~~~~~~aHk~iLaa~S~~F~~~f~~~~~e-~~~~i~l~~~~~~~~f~~ll~~~Ytg~~~~~~~~ 99 (127)
T 1r29_A 21 NRLRSRDILTDVVIVVSREQFRAHKTVLMACSGLFYSIFTDQLKR-NLSVINLDPEINPEGFNILLDFMYTSRLNLREGN 99 (127)
T ss_dssp HHHHHTTCSCCEEEEETTEEEEECHHHHHHHCHHHHHHHTSTTTT-TCSEEECCTTSCHHHHHHHHHHHHHSCCCCCTTT
T ss_pred HHHHhcCCCCCEEEEECCEEEehHHHHHHHhCHHHHHHhcCCccC-CCCEEEeCCCCCHHHHHHHHHHHcCCCcCcCHHH
Confidence 578899999999999999999999999999999999999999998 7789999 99999999999999999999999999
Q ss_pred HHHHHHHHHhhChHhHHHHHHHHHHhc
Q 005044 620 AQDLLRAADQYLLEGLKRLCEYTIAQD 646 (717)
Q Consensus 620 ~~~ll~~A~~~~~~~l~~~c~~~l~~~ 646 (717)
+.+++.+|++|+++.|++.|+++|.++
T Consensus 100 ~~~ll~~A~~~~i~~L~~~c~~~l~~~ 126 (127)
T 1r29_A 100 IMAVMATAMYLQMEHVVDTCRKFIKAS 126 (127)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHhc
Confidence 999999999999999999999999763
No 44
>1xqr_A HSPBP1 protein; armadillo repeat, superhelical twist, chaperone; 2.10A {Homo sapiens} SCOP: a.118.1.21 PDB: 1xqs_A*
Probab=99.85 E-value=5.1e-20 Score=181.10 Aligned_cols=224 Identities=16% Similarity=0.145 Sum_probs=188.9
Q ss_pred HHHhHHHHHHHHhcCChhhHHHHHhCCChHHHHH-HHhccccCCCccchhHHHHHHHHHHHHHhhcCchhhhHHHhcCCc
Q 005044 131 EVEKGSAFALGLLAVKPEHQQLIVDNGALSHLVN-LLKRHMDSNCSRAVNSVIRRAADAITNLAHENSSIKTRVRMEGGI 209 (717)
Q Consensus 131 ~v~~~a~~~L~~l~~~~~~~~~~~~~~~i~~L~~-lL~~~~~~~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i 209 (717)
+-+..|+..|.+++.+.++...+...|+++.|+. +|++.+. .++..|+++|++++.+++..+..+++.|++
T Consensus 55 e~k~~Al~~L~~lv~~~dna~~~~~~G~l~~Lv~~lL~s~~~--------~vr~~Aa~~Lg~ia~~n~~~~~~vv~~g~l 126 (296)
T 1xqr_A 55 QEREGALELLADLCENMDNAADFCQLSGMHLLVGRYLEAGAA--------GLRWRAAQLIGTCSQNVAAIQEQVLGLGAL 126 (296)
T ss_dssp HHHHHHHHHHHHHHTSHHHHHHHHHTTHHHHHHHTTTTCSSH--------HHHHHHHHHHHHHHTTCHHHHHHHHHTTHH
T ss_pred HHHHHHHHHHHHHHhChhhHHHHHHcCCHHHHHHHHHcCCCH--------HHHHHHHHHHHHHHhCCHHHHHHHHHCCCH
Confidence 6788999999999988889999999999999999 9987665 999999999999999899999999999999
Q ss_pred HHHHHhhcC-CCHHHHHHHHHHHHHhhccChhhHHHHHhcCCHHHHHHHHcCCCHHHHHHHHHHHHHhhcCChHHHHHHH
Q 005044 210 PPLVELLEF-TDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSEDSAIHYEAVGVIGNLVHSSPNIKKEVL 288 (717)
Q Consensus 210 ~~L~~ll~~-~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~ 288 (717)
+.|+.+|++ ++..++..|+|+|.+++.+++.....+.+.|+++.|+.+|++++..++..|+|+|++++.++++.+..++
T Consensus 127 ~~Ll~LL~~~~~~~v~~~A~~ALsnl~~~~~~~~~~~~~~ggi~~L~~lL~~~d~~v~~~A~~aLs~L~~~~~~~~~~vv 206 (296)
T 1xqr_A 127 RKLLRLLDRDACDTVRVKALFAISCLVREQEAGLLQFLRLDGFSVLMRAMQQQVQKLKVKSAFLLQNLLVGHPEHKGTLC 206 (296)
T ss_dssp HHHHHHHHHCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHH
T ss_pred HHHHHHHccCCCHHHHHHHHHHHHHHHcCCcHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHhCChHHHHHHH
Confidence 999999985 5899999999999999987888888899999999999999999999999999999999988888889999
Q ss_pred HcCChHHHHHhhccCChHHHHHHHHHHHHHhcCChhhHHHHHhc--CChHH---HHHHhcC-C-CHHHHHHHHHHHHHhh
Q 005044 289 AAGALQPVIGLLSSCCSESQREAALLLGQFAATDSDCKVHIVQR--GAVRP---LIEMLQS-P-DVQLREMSAFALGRLA 361 (717)
Q Consensus 289 ~~g~l~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~l~~~--~~l~~---L~~~l~~-~-~~~v~~~a~~~L~~l~ 361 (717)
+.|+++.|+.+|.+++..++..++.+|++++...+......... .+... -.+.++. . +.++.+.+...+.++-
T Consensus 207 ~~g~i~~Lv~LL~~~d~~v~~~al~aL~~l~~~~~~~~~~~~~~~~~l~~lL~~~~~~lq~~e~~~e~~~~~~~il~~~f 286 (296)
T 1xqr_A 207 SMGMVQQLVALVRTEHSPFHEHVLGALCSLVTDFPQGVRECREPELGLEELLRHRCQLLQQHEEYQEELEFCEKLLQTCF 286 (296)
T ss_dssp HTTHHHHHHHHHTSCCSTHHHHHHHHHHHHHTTCHHHHHHHHCGGGCHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHHHC
T ss_pred HcCCHHHHHHHHcCCChhHHHHHHHHHHHHHhCChhHHHHHhccHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHHHHc
Confidence 99999999999999999999999999999987655443332221 11111 1223332 2 3566666666666555
Q ss_pred c
Q 005044 362 Q 362 (717)
Q Consensus 362 ~ 362 (717)
.
T Consensus 287 ~ 287 (296)
T 1xqr_A 287 S 287 (296)
T ss_dssp C
T ss_pred C
Confidence 3
No 45
>2z8h_A Transcription regulator protein BACH1; BTB, POZ, disulfide bond, activator, DNA-binding, nucleus, phosphorylation, repressor; 2.50A {Mus musculus}
Probab=99.85 E-value=1.9e-21 Score=169.12 Aligned_cols=109 Identities=25% Similarity=0.386 Sum_probs=103.2
Q ss_pred HHhhcCCCCccEEEEEcCeEeehhHHHHhhccHHHHHhhcCCCCCCCCcceEcC-CCCHHHHHHHHHHHhcCccccchhh
Q 005044 541 DQFVNNATLSDVTFLVEGRRFYAHRICLLASSDAFRAMFDGGYREKDARDIEIP-NIRWEVFELMMRFIYTGSVDVTLDI 619 (717)
Q Consensus 541 ~~~~~~~~~~Dv~~~~~~~~~~~h~~il~~~s~~f~~~~~~~~~e~~~~~i~l~-~~~~~~~~~~l~~~Yt~~~~~~~~~ 619 (717)
++++.++.++||++.++|+.|++||.||+++|+||++||.+++.++ ..|.++ ++++++|+.+|+|+|||.+.++.++
T Consensus 28 ~~l~~~~~~~Dv~l~v~~~~f~aHk~vLaa~S~yF~~~f~~~~~e~--~~i~l~~~v~~~~~~~lL~~~Ytg~~~i~~~~ 105 (138)
T 2z8h_A 28 NDQRKKDVLCDVTVLVEGQRFRAHRSVLAACSSYFHSRIVGQTDAE--LTVTLPEEVTVKGFEPLIQFAYTAKLILSKDN 105 (138)
T ss_dssp HHHHHHTCSCCEEEEETTEEEEECHHHHHHHCHHHHHHHTTCCCTT--EEEECCTTSCHHHHHHHHHHHHHSCCCCCTTT
T ss_pred HHHHhhCCCcCeEEEECCEEEechHHHHHHcCHHHHHHHhcCCCCC--ceEEeCCCCCHHHHHHHHHHhcCCCcccCHHH
Confidence 6788899999999999999999999999999999999999988764 578885 8999999999999999999999999
Q ss_pred HHHHHHHHHhhChHhHHHHHHHHHHhcCChhc
Q 005044 620 AQDLLRAADQYLLEGLKRLCEYTIAQDISLEN 651 (717)
Q Consensus 620 ~~~ll~~A~~~~~~~l~~~c~~~l~~~i~~~n 651 (717)
+.+++.+|++|+++.|+..|+++|.++++.+|
T Consensus 106 v~~ll~~A~~~~i~~L~~~C~~~l~~~l~~sn 137 (138)
T 2z8h_A 106 VDEVCRCVEFLSVHNIEESCFQFLKFKFLDST 137 (138)
T ss_dssp HHHHHHHHHHHTCGGGHHHHHHHTTCCCSCCC
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHHhccccc
Confidence 99999999999999999999999999998877
No 46
>3b84_A Zinc finger and BTB domain-containing protein 48; krueppel related zinc finger protein 3, HKR3, ZBTB48, Z finger, oncogene; 1.74A {Homo sapiens}
Probab=99.84 E-value=2.8e-21 Score=163.21 Aligned_cols=101 Identities=25% Similarity=0.381 Sum_probs=94.8
Q ss_pred HHhhcCCCCccEEEEEcCeEeehhHHHHhhccHHHHHhhcCCCCCCCCcceEcCCCCHHHHHHHHHHHhcCccccchhhH
Q 005044 541 DQFVNNATLSDVTFLVEGRRFYAHRICLLASSDAFRAMFDGGYREKDARDIEIPNIRWEVFELMMRFIYTGSVDVTLDIA 620 (717)
Q Consensus 541 ~~~~~~~~~~Dv~~~~~~~~~~~h~~il~~~s~~f~~~~~~~~~e~~~~~i~l~~~~~~~~~~~l~~~Yt~~~~~~~~~~ 620 (717)
++++.++.++||++.++|+.|++||.||+++|+||++||.+++ +..|.++++++++|+.+++|+|||.+.++.+++
T Consensus 16 ~~l~~~~~~~Dv~l~v~~~~f~aHk~vLaa~S~yF~~~f~~~~----~~~i~l~~~~~~~f~~ll~~iYtg~~~~~~~~v 91 (119)
T 3b84_A 16 NKQREKGQYCDATLDVGGLVFKAHWSVLACCSHFFQSLYGDGS----GGSVVLPAGFAEIFGLLLDFFYTGHLALTSGNR 91 (119)
T ss_dssp HHHHHHTCSCCEEEEETTEEEEECHHHHHHHCHHHHHHHTTTT----CCCEEECGGGHHHHHHHHHHHHHSCCCCCTTTH
T ss_pred HHHHhcCCCcceEEEECCEEEEeeHHHHhhcCHHHHHHHCCCC----CCeEEeCCCCHHHHHHHHHHHcCCCCccCHHHH
Confidence 5688899999999999999999999999999999999999876 468999999999999999999999999999999
Q ss_pred HHHHHHHHhhChHhHHHHHHHHHHh
Q 005044 621 QDLLRAADQYLLEGLKRLCEYTIAQ 645 (717)
Q Consensus 621 ~~ll~~A~~~~~~~l~~~c~~~l~~ 645 (717)
.+++.+|++|+++.|++.|++++.+
T Consensus 92 ~~ll~~A~~~~i~~L~~~C~~~l~~ 116 (119)
T 3b84_A 92 DQVLLAARELRVPEAVELCQSFKPK 116 (119)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHCC--
T ss_pred HHHHHHHHHhCcHHHHHHHHHHHHH
Confidence 9999999999999999999998875
No 47
>2ppi_A Gigaxonin; BTB domain, protein degradation, structural genomics, struct genomics consortium, SGC, structural protein; 2.40A {Homo sapiens}
Probab=99.84 E-value=3.2e-21 Score=168.41 Aligned_cols=103 Identities=24% Similarity=0.411 Sum_probs=94.2
Q ss_pred HHhhcCCCCccEEEEEcCeEeehhHHHHhhccHHHHHhhcCCCCC--CCCcceEcCCCCHHHHHHHHHHHhcCccccchh
Q 005044 541 DQFVNNATLSDVTFLVEGRRFYAHRICLLASSDAFRAMFDGGYRE--KDARDIEIPNIRWEVFELMMRFIYTGSVDVTLD 618 (717)
Q Consensus 541 ~~~~~~~~~~Dv~~~~~~~~~~~h~~il~~~s~~f~~~~~~~~~e--~~~~~i~l~~~~~~~~~~~l~~~Yt~~~~~~~~ 618 (717)
++++.++.++||++.++|+.|++||.||+++|+||++||.++|.+ +....|.++++++++|+.+|+|+|||.+.++.+
T Consensus 39 ~~l~~~~~~~Dv~l~v~~~~f~aHk~vLaa~S~yF~~mf~~~~~e~e~~~~~I~l~~v~~~~f~~lL~fiYtg~~~i~~~ 118 (144)
T 2ppi_A 39 SSFREESRFCDAHLVLDGEEIPVQKNILAAASPYIRTKLNYNPPKDDGSTYKIELEGISVMVMREILDYIFSGQIRLNED 118 (144)
T ss_dssp HHTTC--CCCCEEEEETTEEEEECHHHHHHHCHHHHHHHHHCC-----CCCEEECCSSCHHHHHHHHHHHTTSCCCCCTT
T ss_pred HHHHhcCCCcceEEEECCEEEehHHHHHHHcCHHHHHHHcCCCccccCCCcEEEeCCCCHHHHHHHHHHHhCCCCCCCHH
Confidence 578889999999999999999999999999999999999998875 667899999999999999999999999999999
Q ss_pred hHHHHHHHHHhhChHhHHHHHHHHH
Q 005044 619 IAQDLLRAADQYLLEGLKRLCEYTI 643 (717)
Q Consensus 619 ~~~~ll~~A~~~~~~~l~~~c~~~l 643 (717)
++.+++.+|++|+++.|++.|+++|
T Consensus 119 ~v~~ll~~A~~l~i~~L~~~C~~~L 143 (144)
T 2ppi_A 119 TIQDVVQAADLLLLTDLKTLCCEFL 143 (144)
T ss_dssp THHHHHHHHHHTTCHHHHHHHHTTC
T ss_pred HHHHHHHHHHHhCcHHHHHHHHHHh
Confidence 9999999999999999999999876
No 48
>1buo_A POZ domain, protein (promyelocytic leukemia zinc finger prote; protein-protein interaction domain, transcriptional represso finger protein; 1.90A {Homo sapiens} SCOP: d.42.1.1 PDB: 1cs3_A
Probab=99.84 E-value=1.3e-20 Score=159.76 Aligned_cols=102 Identities=25% Similarity=0.399 Sum_probs=96.1
Q ss_pred HHhhcCCCCccEEEEEcCeEeehhHHHHhhccHHHHHhhcCCCCCCCCcceEcCCCCHHHHHHHHHHHhcCccccchhhH
Q 005044 541 DQFVNNATLSDVTFLVEGRRFYAHRICLLASSDAFRAMFDGGYREKDARDIEIPNIRWEVFELMMRFIYTGSVDVTLDIA 620 (717)
Q Consensus 541 ~~~~~~~~~~Dv~~~~~~~~~~~h~~il~~~s~~f~~~~~~~~~e~~~~~i~l~~~~~~~~~~~l~~~Yt~~~~~~~~~~ 620 (717)
++++.++.++||++.++|+.|++||.||+++|+||++||.++ ...|.++++++++|+.+++|+|||.++++.+++
T Consensus 20 ~~l~~~~~~~Dv~l~v~~~~f~aHk~vLaa~S~yF~~~f~~~-----~~~i~l~~~~~~~f~~ll~~~Ytg~~~~~~~~~ 94 (121)
T 1buo_A 20 NQMRLAGTLCDVVIMVDSQEFHAHRTVLACTSKMFEILFHRN-----SQHYTLDFLSPKTFQQILEYAYTATLQAKAEDL 94 (121)
T ss_dssp HHHHHHTTTCCEEEEESSCEEEECHHHHHHHCHHHHHHTTSC-----CSEEEECSSCHHHHHHHHHHHHHSCCCCCGGGH
T ss_pred HHHHhcCCCCCEEEEECCEEEehhHHHHhhcCHHHHHHHcCC-----CcEEEeCCCCHHHHHHHHHhhcCCCcCCCHHHH
Confidence 678889999999999999999999999999999999999864 457999999999999999999999999999999
Q ss_pred HHHHHHHHhhChHhHHHHHHHHHHhcC
Q 005044 621 QDLLRAADQYLLEGLKRLCEYTIAQDI 647 (717)
Q Consensus 621 ~~ll~~A~~~~~~~l~~~c~~~l~~~i 647 (717)
.+++.+|++|+++.|++.|+++|.+.|
T Consensus 95 ~~ll~~A~~~~i~~L~~~c~~~l~~~I 121 (121)
T 1buo_A 95 DDLLYAAEILEIEYLEEQCLKMLETIQ 121 (121)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHCCHHHHHHHHHHHHHhC
Confidence 999999999999999999999998643
No 49
>2yy9_A Zinc finger and BTB domain-containing protein 48; mouse, HKR3, structural genomics, NPPSFA; 2.60A {Mus musculus}
Probab=99.83 E-value=4.1e-21 Score=165.99 Aligned_cols=105 Identities=25% Similarity=0.345 Sum_probs=93.2
Q ss_pred HHhhcCCCCccEEEEEcCeEeehhHHHHhhccHHHHHhhcCCCCCCCCcceEcCCCCHHHHHHHHHHHhcCccccchhhH
Q 005044 541 DQFVNNATLSDVTFLVEGRRFYAHRICLLASSDAFRAMFDGGYREKDARDIEIPNIRWEVFELMMRFIYTGSVDVTLDIA 620 (717)
Q Consensus 541 ~~~~~~~~~~Dv~~~~~~~~~~~h~~il~~~s~~f~~~~~~~~~e~~~~~i~l~~~~~~~~~~~l~~~Yt~~~~~~~~~~ 620 (717)
++++.++.++||++.++|+.|++||.||+++|+||++||.+++ +..|.++++++++|+.+|+|+|||.+.++.+++
T Consensus 17 ~~l~~~~~~~Dv~l~v~~~~f~aHk~vLaa~S~yF~~mf~~~~----~~~i~l~~~~~~~f~~lL~fiYtg~~~i~~~~v 92 (135)
T 2yy9_A 17 NKQREKGQYCDATLDVGGLVFKAHWSVLACCSHFFQRIYGDGT----GGSVVLPAGFAEIFGLLLDFFYTGHLALTSGNR 92 (135)
T ss_dssp HHHHHTTTTCCEEEEETTEEEEECHHHHHHHCHHHHHTCC--------CCEEECGGGHHHHHHHHHHHHHSCCCCCTTTH
T ss_pred HHHHhcCCCcceEEEECCEEEehHHHHHHHhCHHHHHHHcCCC----CCeEEeCCCCHHHHHHHHHHHhCCCCCCCHHHH
Confidence 6788999999999999999999999999999999999999876 467999999999999999999999999999999
Q ss_pred HHHHHHHHhhChHhHHHHHHHHHHhcCCh
Q 005044 621 QDLLRAADQYLLEGLKRLCEYTIAQDISL 649 (717)
Q Consensus 621 ~~ll~~A~~~~~~~l~~~c~~~l~~~i~~ 649 (717)
.+++.+|++|+++.|++.|+++|.+++..
T Consensus 93 ~~ll~~A~~l~i~~L~~~C~~~l~~~l~~ 121 (135)
T 2yy9_A 93 DQVLLAAKELRVPEAVELCQSFQPQTSVG 121 (135)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHCCC-----
T ss_pred HHHHHHHHHhCcHHHHHHHHHHHHHhccC
Confidence 99999999999999999999999887643
No 50
>2vpk_A Myoneurin; transcription regulation, transcription, metal-binding, alternative splicing, zinc, nucleus, BTB domain, zinc-finger, DNA-binding; 2.00A {Homo sapiens}
Probab=99.83 E-value=1.4e-20 Score=158.49 Aligned_cols=100 Identities=22% Similarity=0.400 Sum_probs=93.8
Q ss_pred HHhhcCCCCccEEEEEcCeEeehhHHHHhhccHHHHHhhcCCCCCCCCcceEcC--CCCHHHHHHHHHHHhcCccccchh
Q 005044 541 DQFVNNATLSDVTFLVEGRRFYAHRICLLASSDAFRAMFDGGYREKDARDIEIP--NIRWEVFELMMRFIYTGSVDVTLD 618 (717)
Q Consensus 541 ~~~~~~~~~~Dv~~~~~~~~~~~h~~il~~~s~~f~~~~~~~~~e~~~~~i~l~--~~~~~~~~~~l~~~Yt~~~~~~~~ 618 (717)
++++.++.++||++.++|+.|++||.||+++|+||++||.++ .+..|.++ ++++++|+.+++|+|||.+.++.+
T Consensus 14 ~~l~~~~~~~Dv~l~v~~~~~~aHk~vLaa~S~yF~~~f~~~----~~~~i~l~~~~~~~~~f~~ll~~~Yt~~~~~~~~ 89 (116)
T 2vpk_A 14 NKQREAGFLCDCTIVIGEFQFKAHRNVLASFSEYFGAIYRST----SENNVFLDQSQVKADGFQKLLEFIYTGTLNLDSW 89 (116)
T ss_dssp HHHHHHTCSCCEEEEETTEEEEECHHHHHHHCHHHHHHHTTC----CCSCEECCTTTCCHHHHHHHHHHHHHSCCCCCTT
T ss_pred HHHHhcCCCCcEEEEECCEEEeccHHHHhhcCHHHHHHHcCC----CCCeEEeecCCCCHHHHHHHHHHHcCCCcccCHH
Confidence 567889999999999999999999999999999999999876 34567777 999999999999999999999999
Q ss_pred hHHHHHHHHHhhChHhHHHHHHHHHH
Q 005044 619 IAQDLLRAADQYLLEGLKRLCEYTIA 644 (717)
Q Consensus 619 ~~~~ll~~A~~~~~~~l~~~c~~~l~ 644 (717)
++.+++.+|++|+++.|++.|+++|.
T Consensus 90 ~v~~ll~~A~~~~i~~L~~~C~~~l~ 115 (116)
T 2vpk_A 90 NVKEIHQAADYLKVEEVVTKCKIKME 115 (116)
T ss_dssp THHHHHHHHHHTTCHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHh
Confidence 99999999999999999999999885
No 51
>3tt9_A Plakophilin-2; cell adhesion; 1.55A {Homo sapiens}
Probab=99.82 E-value=1.6e-19 Score=169.17 Aligned_cols=194 Identities=16% Similarity=0.226 Sum_probs=169.8
Q ss_pred CcHHHHHhhcCCCH--HHHHHHHHHHHHhhccChhhHHHHHhcCCHHHHHHHHcCCCHHHHHHHHHHHHHhhcCChHHHH
Q 005044 208 GIPPLVELLEFTDT--KVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSEDSAIHYEAVGVIGNLVHSSPNIKK 285 (717)
Q Consensus 208 ~i~~L~~ll~~~~~--~v~~~a~~~L~~L~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~ 285 (717)
.++.++++|.++++ .++..|+++|.+++..++.++..+.+.|++|.|+++|++++++++..|+++|.||+..+++++.
T Consensus 9 ~i~~lV~lL~s~~~~~~~q~~Aa~~l~~L~~~~~~~r~~I~~~G~Ip~LV~lL~s~~~~vq~~Aa~aL~nLa~~~~~nk~ 88 (233)
T 3tt9_A 9 TLERAVSMLEADHMLPSRISAAATFIQHECFQKSEARKRVNQLRGILKLLQLLKVQNEDVQRAVCGALRNLVFEDNDNKL 88 (233)
T ss_dssp CHHHHHHTCCSSCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHTTHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred cHHHHHHHhCCCCchHHHHHHHHHHHHHHHcCCcHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHHhCCHHHHH
Confidence 57899999999887 8999999999999988899999999999999999999999999999999999999988889999
Q ss_pred HHHHcCChHHHHHhhcc-CChHHHHHHHHHHHHHhcCChhhHHHHHhcCChHHHHHHhc----------------CCCHH
Q 005044 286 EVLAAGALQPVIGLLSS-CCSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQ----------------SPDVQ 348 (717)
Q Consensus 286 ~~~~~g~l~~L~~ll~~-~~~~~~~~a~~~L~~l~~~~~~~~~~l~~~~~l~~L~~~l~----------------~~~~~ 348 (717)
.+.+.|+++.|+++|.+ .+.++++.++.+|+||+. .+.++..+.+. +++.|++++. ..++.
T Consensus 89 ~I~~~GaI~~Lv~lL~~~~~~~~~e~a~~aL~nLS~-~~~~k~~i~~~-~i~~Lv~ll~~p~sG~~~~~~~~~~~~~~~~ 166 (233)
T 3tt9_A 89 EVAELNGVPRLLQVLKQTRDLETKKQITGLLWNLSS-NDKLKNLMITE-ALLTLTENIIIPFSGWPEGDYPKANGLLDFD 166 (233)
T ss_dssp HHHHTTHHHHHHHHHHHCCCHHHHHHHHHHHHHHHT-SGGGHHHHHHH-HHHHHCCCCCHHHHCCCGGGCCCCCTTCCHH
T ss_pred HHHHcCCHHHHHHHHccCCCHHHHHHHHHHHHHHHc-ChhhHHHHHhc-cHHHHHHHHhccccCCcccccccccccchHH
Confidence 99999999999999984 689999999999999975 46667777764 6888888652 13779
Q ss_pred HHHHHHHHHHHhhcC-CCCchhhHhc-CChHHHHHhhcC------CChhHHHHHHHHHHhccC
Q 005044 349 LREMSAFALGRLAQD-MHNQAGIAHN-GGLVPLLKLLDS------KNGSLQHNAAFALYGLAD 403 (717)
Q Consensus 349 v~~~a~~~L~~l~~~-~~~~~~l~~~-~~l~~L~~ll~~------~~~~v~~~a~~~L~~l~~ 403 (717)
++.+|.++|.||+.. .++|..+.+. |+++.|+.+++. .+...++.|..+|.||+-
T Consensus 167 v~~na~~~L~nLss~~~~~R~~~r~~~Gli~~Lv~~l~~~~~~~~~~~k~~En~v~~L~nLs~ 229 (233)
T 3tt9_A 167 IFYNVTGCLRNMSSAGADGRKAMRRCDGLIDSLVHYVRGTIADYQPDDKATENCVCILHNLSY 229 (233)
T ss_dssp HHHHHHHHHHHHTTSCHHHHHHHHTSTTHHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHCCCcHHHHHHHHHhhhhcccchhHHHHHHHHHHHHHHh
Confidence 999999999999984 4778888887 557999999864 256789999999999974
No 52
>3tt9_A Plakophilin-2; cell adhesion; 1.55A {Homo sapiens}
Probab=99.82 E-value=2.4e-19 Score=167.97 Aligned_cols=196 Identities=16% Similarity=0.177 Sum_probs=171.4
Q ss_pred CHHHHHHHHcCCCH--HHHHHHHHHHHHhhcCChHHHHHHHHcCChHHHHHhhccCChHHHHHHHHHHHHHhcCChhhHH
Q 005044 250 ALPTLILMLRSEDS--AIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLSSCCSESQREAALLLGQFAATDSDCKV 327 (717)
Q Consensus 250 ~i~~L~~ll~~~~~--~v~~~a~~~L~~l~~~~~~~~~~~~~~g~l~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~ 327 (717)
.++.++++|+++++ +++..|+++|.+++..++..+..+.+.|++|.|+++|.+++++++..|+++|.|++..+++++.
T Consensus 9 ~i~~lV~lL~s~~~~~~~q~~Aa~~l~~L~~~~~~~r~~I~~~G~Ip~LV~lL~s~~~~vq~~Aa~aL~nLa~~~~~nk~ 88 (233)
T 3tt9_A 9 TLERAVSMLEADHMLPSRISAAATFIQHECFQKSEARKRVNQLRGILKLLQLLKVQNEDVQRAVCGALRNLVFEDNDNKL 88 (233)
T ss_dssp CHHHHHHTCCSSCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHTTHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred cHHHHHHHhCCCCchHHHHHHHHHHHHHHHcCCcHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHHhCCHHHHH
Confidence 58999999999887 8999999999999988888899999999999999999999999999999999999987889999
Q ss_pred HHHhcCChHHHHHHhc-CCCHHHHHHHHHHHHHhhcCCCCchhhHhcCChHHHHHhhc----------------CCChhH
Q 005044 328 HIVQRGAVRPLIEMLQ-SPDVQLREMSAFALGRLAQDMHNQAGIAHNGGLVPLLKLLD----------------SKNGSL 390 (717)
Q Consensus 328 ~l~~~~~l~~L~~~l~-~~~~~v~~~a~~~L~~l~~~~~~~~~l~~~~~l~~L~~ll~----------------~~~~~v 390 (717)
.+.+.|++|.|+++|. +++..+++.++.+|+||+..+.++..+++. ++++|++++. ..+..+
T Consensus 89 ~I~~~GaI~~Lv~lL~~~~~~~~~e~a~~aL~nLS~~~~~k~~i~~~-~i~~Lv~ll~~p~sG~~~~~~~~~~~~~~~~v 167 (233)
T 3tt9_A 89 EVAELNGVPRLLQVLKQTRDLETKKQITGLLWNLSSNDKLKNLMITE-ALLTLTENIIIPFSGWPEGDYPKANGLLDFDI 167 (233)
T ss_dssp HHHHTTHHHHHHHHHHHCCCHHHHHHHHHHHHHHHTSGGGHHHHHHH-HHHHHCCCCCHHHHCCCGGGCCCCCTTCCHHH
T ss_pred HHHHcCCHHHHHHHHccCCCHHHHHHHHHHHHHHHcChhhHHHHHhc-cHHHHHHHHhccccCCcccccccccccchHHH
Confidence 9999999999999997 579999999999999999988888888774 6889887652 136689
Q ss_pred HHHHHHHHHhccC-CCcchHHHHHhcCccccccchhHHhhhHHHHHHHHHHHHHHhhhchHHHHHHHHhhc------chh
Q 005044 391 QHNAAFALYGLAD-NEDNVADFIRVGGVQKLQDGEFIVQATKDCVAKTLKRLEEKIHGRVLNHLLYLMRVA------EKG 463 (717)
Q Consensus 391 ~~~a~~~L~~l~~-~~~~~~~l~~~~~i~~L~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~L~~ll~~~------~~~ 463 (717)
+.+|..+|+||+. +++++..+.+.+ |+++.|+.+++.. +..
T Consensus 168 ~~na~~~L~nLss~~~~~R~~~r~~~--------------------------------Gli~~Lv~~l~~~~~~~~~~~k 215 (233)
T 3tt9_A 168 FYNVTGCLRNMSSAGADGRKAMRRCD--------------------------------GLIDSLVHYVRGTIADYQPDDK 215 (233)
T ss_dssp HHHHHHHHHHHTTSCHHHHHHHHTST--------------------------------THHHHHHHHHHHHHHTTCTTCH
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHCC--------------------------------CcHHHHHHHHHhhhhcccchhH
Confidence 9999999999987 458888888754 2566677777763 457
Q ss_pred HHHHHHHHHHhccCC
Q 005044 464 VQRRVALALAHLCSP 478 (717)
Q Consensus 464 v~~~a~~aL~~l~~~ 478 (717)
.+++++.+|.||+..
T Consensus 216 ~~En~v~~L~nLs~~ 230 (233)
T 3tt9_A 216 ATENCVCILHNLSYQ 230 (233)
T ss_dssp HHHHHHHHHHHHCCC
T ss_pred HHHHHHHHHHHHHhh
Confidence 899999999999865
No 53
>2q81_A MIZ-1 protein; BTB/POZ domain, transcription; HET: PG4; 2.10A {Homo sapiens} PDB: 3m52_A
Probab=99.81 E-value=3.2e-20 Score=156.70 Aligned_cols=99 Identities=22% Similarity=0.359 Sum_probs=93.3
Q ss_pred HHhhcCCCCccEEEEEcCeEeehhHHHHhhccHHHHHhhcCCCCCCCCcceEcCCCCHHHHHHHHHHHhcCccccchhhH
Q 005044 541 DQFVNNATLSDVTFLVEGRRFYAHRICLLASSDAFRAMFDGGYREKDARDIEIPNIRWEVFELMMRFIYTGSVDVTLDIA 620 (717)
Q Consensus 541 ~~~~~~~~~~Dv~~~~~~~~~~~h~~il~~~s~~f~~~~~~~~~e~~~~~i~l~~~~~~~~~~~l~~~Yt~~~~~~~~~~ 620 (717)
++++.++.++||++.++|..|++||.||+++|+||++||.++ ..+|.++++++++|+.+++|+|||.+.++.+++
T Consensus 19 ~~l~~~~~~~Dv~l~v~~~~~~aHk~vLaa~S~yF~~~f~~~-----~~~i~l~~~~~~~f~~ll~~~Ytg~~~i~~~~~ 93 (119)
T 2q81_A 19 NQQRQLGLLCDCTFVVDGVHFKAHKAVLAACSEYFKMLFVDQ-----KDVVHLDISNAAGLGQVLEFMYTAKLSLSPENV 93 (119)
T ss_dssp HHHHHHTCSCCEEEEETTEEEEECHHHHHHHCHHHHHHHHHC-----CSGGGGGGCCHHHHHHHHHHHHHSCCCCCTTTH
T ss_pred HHHHhcCCCcceEEEECCEEEehhHHHHHHcCHHHHHHHcCC-----CCEEEeCCCCHHHHHHHHHHHcCCCCccCHHHH
Confidence 567889999999999999999999999999999999999862 457889999999999999999999999999999
Q ss_pred HHHHHHHHhhChHhHHHHHHHHHH
Q 005044 621 QDLLRAADQYLLEGLKRLCEYTIA 644 (717)
Q Consensus 621 ~~ll~~A~~~~~~~l~~~c~~~l~ 644 (717)
.+++.+|++|+++.|++.|++++.
T Consensus 94 ~~ll~~A~~l~i~~L~~~C~~~l~ 117 (119)
T 2q81_A 94 DDVLAVATFLQMQDIITACHALKS 117 (119)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHT
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHh
Confidence 999999999999999999999875
No 54
>3ohu_A Transcription regulator protein BACH2; BTB/POZ domain; 2.10A {Homo sapiens} SCOP: d.42.1.0 PDB: 3ohv_A
Probab=99.81 E-value=8.1e-21 Score=162.34 Aligned_cols=101 Identities=24% Similarity=0.407 Sum_probs=95.3
Q ss_pred HHhhcCCCCccEEEEEcCeEeehhHHHHhhccHHHHHhhcCCCCCCCCcceEcCC-CCHHHHHHHHHHHhcCccccchhh
Q 005044 541 DQFVNNATLSDVTFLVEGRRFYAHRICLLASSDAFRAMFDGGYREKDARDIEIPN-IRWEVFELMMRFIYTGSVDVTLDI 619 (717)
Q Consensus 541 ~~~~~~~~~~Dv~~~~~~~~~~~h~~il~~~s~~f~~~~~~~~~e~~~~~i~l~~-~~~~~~~~~l~~~Yt~~~~~~~~~ 619 (717)
++++.++.++||++.++|+.|++||.||+++|+||++||.+++.| ...|.+++ +++++|+.+++|+|||.+.++.++
T Consensus 24 ~~l~~~~~~~Dv~l~v~~~~f~aHk~vLaa~S~yF~~~f~~~~~e--~~~i~l~~~~~~~~f~~~l~~iYtg~~~~~~~~ 101 (125)
T 3ohu_A 24 NDQRKKDILCDVTLIVERKEFRAHRAVLAACSEYFWQALVGQTKN--DLVVSLPEEVTARGFGPLLQFAYTAKLLLSREN 101 (125)
T ss_dssp HHHHHHTCSCCEEEEETTEEEEECHHHHHHHBHHHHHHHTTCCCS--SCEEECCTTCCHHHHHHHHHHHTTSEEEECTTT
T ss_pred HHHHhcCCccceEEEECCEEEechHHHHHHcCHHHHHHhcCCCCC--CcEEEeCCCCCHHHHHHHHHhHcCCceEECHHH
Confidence 678889999999999999999999999999999999999998877 56899998 999999999999999999999999
Q ss_pred HHHHHHHHHhhChHhHHHHHHHHH
Q 005044 620 AQDLLRAADQYLLEGLKRLCEYTI 643 (717)
Q Consensus 620 ~~~ll~~A~~~~~~~l~~~c~~~l 643 (717)
+.+++.+|++|+++.|++.|++||
T Consensus 102 v~~ll~~A~~l~i~~L~~~C~~~L 125 (125)
T 3ohu_A 102 IREVIRCAEFLRMHNLEDSCFSFL 125 (125)
T ss_dssp HHHHHHHHHHHTBSSCTTSSCCCC
T ss_pred HHHHHHHHHHhCCHHHHHHHHHhC
Confidence 999999999999999999997653
No 55
>2ihc_A Transcription regulator protein BACH1; BRIC-A-BRAC domain,transcription factor, protein-PROT interaction; 2.44A {Homo sapiens}
Probab=99.80 E-value=1.3e-20 Score=160.51 Aligned_cols=102 Identities=25% Similarity=0.423 Sum_probs=92.9
Q ss_pred HHhhcCCCCccEEEEEcCeEeehhHHHHhhccHHHHHhhcCCCCCCCCcceEcC-CCCHHHHHHHHHHHhcCccccchhh
Q 005044 541 DQFVNNATLSDVTFLVEGRRFYAHRICLLASSDAFRAMFDGGYREKDARDIEIP-NIRWEVFELMMRFIYTGSVDVTLDI 619 (717)
Q Consensus 541 ~~~~~~~~~~Dv~~~~~~~~~~~h~~il~~~s~~f~~~~~~~~~e~~~~~i~l~-~~~~~~~~~~l~~~Yt~~~~~~~~~ 619 (717)
++++.++.++||++.++|+.|++||.||+++|+||++||.+++.|+ ..+.++ ++++++|+.+|+|+|||.+.++.++
T Consensus 21 ~~l~~~~~~~Dv~l~v~~~~~~aHk~vLaa~S~yF~~mf~~~~~e~--~~i~l~~~v~~~~f~~lL~~iYtg~~~i~~~~ 98 (124)
T 2ihc_A 21 NDQRKKDVLCDVTIFVEGQRFRAHRSVLAACSSYFHSRIVGQADGE--LNITLPEEVTVKGFEPLIQFAYTAKLILSKEN 98 (124)
T ss_dssp HHHHHHTCSCCEEEEETTEEEEECHHHHHHHBHHHHHHHTTC---C--EEEECCTTSCHHHHHHHHHHHHHSEEEEETTT
T ss_pred HHHHhcCCCcCEEEEECCEEEecHHHHHHHcCHHHHHHHcCCCCCC--ceEeecCCcCHHHHHHHHHHhcCCCcccCHHH
Confidence 6788899999999999999999999999999999999999998764 578884 8999999999999999999999999
Q ss_pred HHHHHHHHHhhChHhHHHHHHHHHH
Q 005044 620 AQDLLRAADQYLLEGLKRLCEYTIA 644 (717)
Q Consensus 620 ~~~ll~~A~~~~~~~l~~~c~~~l~ 644 (717)
+.+++.+|++|+++.|++.|+++|.
T Consensus 99 v~~ll~~A~~~~~~~L~~~C~~~l~ 123 (124)
T 2ihc_A 99 VDEVCKCVEFLSVHNIEESCFQFLK 123 (124)
T ss_dssp HHHHHHHHHHHTBSSCCGGGGGTC-
T ss_pred HHHHHHHHHHHCCHHHHHHHHHHHh
Confidence 9999999999999999999998764
No 56
>3ga1_A Nucleus accumbens-associated protein 1; BTB/POZ domain, phosphoprotein, repressor, transcri transcription regulation; 2.10A {Homo sapiens}
Probab=99.80 E-value=2.6e-20 Score=159.95 Aligned_cols=102 Identities=24% Similarity=0.378 Sum_probs=89.7
Q ss_pred HHhhcCCCCccEEEEEcCeEeehhHHHHhhccHHHHHhhcCCCCCCCCcceEcC-CCCHHHHHHHHHHHhcCccccchhh
Q 005044 541 DQFVNNATLSDVTFLVEGRRFYAHRICLLASSDAFRAMFDGGYREKDARDIEIP-NIRWEVFELMMRFIYTGSVDVTLDI 619 (717)
Q Consensus 541 ~~~~~~~~~~Dv~~~~~~~~~~~h~~il~~~s~~f~~~~~~~~~e~~~~~i~l~-~~~~~~~~~~l~~~Yt~~~~~~~~~ 619 (717)
++++.++.++||++.++|+.|++||.||+++|+||++||.++ ....|.++ ++++++|+.+++|+|||.+.++.++
T Consensus 25 ~~l~~~~~~~Dv~l~v~~~~~~~Hk~vLaa~S~~F~~~f~~~----~~~~i~l~~~~~~~~f~~ll~~iYtg~~~i~~~~ 100 (129)
T 3ga1_A 25 NEQRLQGLYCDVSVVVKGHAFKAHRAVLAASSSYFRDLFNNS----RSAVVELPAAVQPQSFQQILSFCYTGRLSMNVGD 100 (129)
T ss_dssp HHHHHTTCSCCEEEEETTEEEEECHHHHHHHBHHHHHHHHHC----CCSEEECCTTCCHHHHHHHHHHHHHSEEECCTTT
T ss_pred HHHHhcCCCcceEEEECCEEEEehHHHHHHcCHHHHHHHcCC----CCCEEEECCCCCHHHHHHHHHHHhCCccccCHHH
Confidence 677889999999999999999999999999999999999876 55789997 8999999999999999999999999
Q ss_pred HHHHHHHHHhhChHhHHHHHHHHHHhc
Q 005044 620 AQDLLRAADQYLLEGLKRLCEYTIAQD 646 (717)
Q Consensus 620 ~~~ll~~A~~~~~~~l~~~c~~~l~~~ 646 (717)
+.+++.+|++|+++.|++.|++||.+.
T Consensus 101 ~~~ll~~A~~~~i~~l~~~C~~~L~~~ 127 (129)
T 3ga1_A 101 QDLLMYTAGFLQIQEIMEKGTEFFLKV 127 (129)
T ss_dssp HHHHHHHHHHTTBTTSSCC--------
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHHh
Confidence 999999999999999999999999864
No 57
>3m5b_A Zinc finger and BTB domain-containing protein 32; POZ domain, BTB/POZ domain, ZBTB32, zinc finger domain-containing protein 32; 2.00A {Homo sapiens} SCOP: d.42.1.0
Probab=99.77 E-value=3.8e-19 Score=149.01 Aligned_cols=94 Identities=20% Similarity=0.221 Sum_probs=86.7
Q ss_pred hhcCCCCccEEEEEcCeEeehhHHHHhhccHHHHHhhcCCCCCCCCcceEcCCCCHHHHHHHHHHHhcCccccchhhHHH
Q 005044 543 FVNNATLSDVTFLVEGRRFYAHRICLLASSDAFRAMFDGGYREKDARDIEIPNIRWEVFELMMRFIYTGSVDVTLDIAQD 622 (717)
Q Consensus 543 ~~~~~~~~Dv~~~~~~~~~~~h~~il~~~s~~f~~~~~~~~~e~~~~~i~l~~~~~~~~~~~l~~~Yt~~~~~~~~~~~~ 622 (717)
.+.++.+|||++.++|+.|++||.||+++|+||++ ....|.++++++++|+.+++|+|||.+.++.+++.+
T Consensus 24 ~r~~~~~~Dv~l~v~~~~f~aHk~vLaa~S~yF~~---------~~~~i~l~~v~~~~f~~ll~fiYtg~~~i~~~~v~~ 94 (119)
T 3m5b_A 24 ARLRPALCDTLITVGSQEFPAHSLVLAGVSQQLGR---------RGQWALGEGISPSTFAQLLNFVYGESVELQPGELRP 94 (119)
T ss_dssp HHHTTTTCCEEEEETTEEEEECHHHHHTTCGGGCC---------CEEEECCSSCCHHHHHHHHHHHTTCCEEECGGGHHH
T ss_pred HHhcCCCcceEEEECCEEEeeEHHHHHHcCHHHhc---------CCCEEEeCCCCHHHHHHHHHHHcCCCcCcCHHHHHH
Confidence 46789999999999999999999999999999974 346799999999999999999999999999999999
Q ss_pred HHHHHHhhChHhHHHHHHHHHHh
Q 005044 623 LLRAADQYLLEGLKRLCEYTIAQ 645 (717)
Q Consensus 623 ll~~A~~~~~~~l~~~c~~~l~~ 645 (717)
++.+|++|+++.|++.|++++.+
T Consensus 95 ll~aA~~l~i~~l~~~C~~~~~~ 117 (119)
T 3m5b_A 95 LQEAARALGVQSLEEACWRARGD 117 (119)
T ss_dssp HHHHHHHTTCHHHHHHHHHHC--
T ss_pred HHHHHHHhCCHHHHHHHHHHHhh
Confidence 99999999999999999998764
No 58
>3fkc_A Transcriptional regulator kaiso; zinc finger and BTB domain containing 33, kaiso transcriptio ZNF-kaiso, ZNF348,wugsc:H_DJ525N14.1; 1.70A {Homo sapiens} PDB: 3m4t_A 3m8v_A
Probab=99.76 E-value=1.8e-18 Score=144.78 Aligned_cols=92 Identities=27% Similarity=0.471 Sum_probs=86.8
Q ss_pred HHhhcCCCCccEEEEEcCeEeehhHHHHhhccHHHHHhhcCCCCCCCCcceEcCCCCHHHHHHHHHHHhcCcc-ccchhh
Q 005044 541 DQFVNNATLSDVTFLVEGRRFYAHRICLLASSDAFRAMFDGGYREKDARDIEIPNIRWEVFELMMRFIYTGSV-DVTLDI 619 (717)
Q Consensus 541 ~~~~~~~~~~Dv~~~~~~~~~~~h~~il~~~s~~f~~~~~~~~~e~~~~~i~l~~~~~~~~~~~l~~~Yt~~~-~~~~~~ 619 (717)
++++.++.++||++.++|+.|++||.||+++|+||++||.++ ...|.++++++++|+.+++|+|||.+ .++.++
T Consensus 23 ~~~~~~~~~~Dv~l~v~~~~f~aHk~vLaa~S~~F~~~f~~~-----~~~i~l~~~~~~~f~~~l~~~Ytg~~~~~~~~~ 97 (116)
T 3fkc_A 23 NEQRGHGLFCDVTVIVEDRKFRAHKNILSASSTYFHQLFSVA-----GQVVELSFIRAEIFAEILNYIYSSKIVRVRSDL 97 (116)
T ss_dssp HHHHHHTTTCCEEEEETTEEEEECHHHHHHHCHHHHHHTTSC-----CSEEEECSSCHHHHHHHHHHHTTSCCCSCCHHH
T ss_pred HHHHhcCCceeEEEEECCEEEehhHHHHHHcCHHHHHHHcCC-----CCEEEeCCCCHHHHHHHHHhhcCCCcCCCCHHH
Confidence 677889999999999999999999999999999999999875 46899999999999999999999999 799999
Q ss_pred HHHHHHHHHhhChHhHHH
Q 005044 620 AQDLLRAADQYLLEGLKR 637 (717)
Q Consensus 620 ~~~ll~~A~~~~~~~l~~ 637 (717)
+.+++.+|++|+++.|++
T Consensus 98 ~~~ll~~A~~l~i~~L~~ 115 (116)
T 3fkc_A 98 LDELIKSGQLLGVKFIAA 115 (116)
T ss_dssp HHHHHHHHHHHTCHHHHT
T ss_pred HHHHHHHHHHhCccccCc
Confidence 999999999999999874
No 59
>1b3u_A Protein (protein phosphatase PP2A); scaffold protein, phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP: a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A* 3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A 3c5w_A
Probab=99.73 E-value=1.9e-16 Score=175.66 Aligned_cols=401 Identities=14% Similarity=0.092 Sum_probs=278.9
Q ss_pred HHHHHHHHHHHHHHhhcChhhHHHHHhCCChHHHHHhhcCCCCCccccCCCccchHHHhHHHHHHHHhc--CChhhHHHH
Q 005044 76 DRAAAKRATHVLAELAKNEEVVNWIVEGGAVPALVKHLQAPPTSEADRNLKPFEHEVEKGSAFALGLLA--VKPEHQQLI 153 (717)
Q Consensus 76 ~~~~~~~a~~~L~~l~~~~~~~~~~~~~g~i~~L~~lL~~~~~~~~~~~~~~~~~~v~~~a~~~L~~l~--~~~~~~~~~ 153 (717)
+..++..++.+|..++..-... ......+|.+..++++++. .+|..|+.+|+.++ ..++.
T Consensus 177 ~~~VR~~a~~~l~~l~~~~~~~--~~~~~l~~~l~~~~~d~~~------------~vr~~a~~~l~~l~~~~~~~~---- 238 (588)
T 1b3u_A 177 TPMVRRAAASKLGEFAKVLELD--NVKSEIIPMFSNLASDEQD------------SVRLLAVEACVNIAQLLPQED---- 238 (588)
T ss_dssp CHHHHHHHHHHHHHHHHTSCHH--HHHHTHHHHHHHHHTCSCH------------HHHTTHHHHHHHHHHHSCHHH----
T ss_pred CHHHHHHHHHHHHHHHHHhcHH--hHHHHHHHHHHHHhcCCcH------------HHHHHHHHHHHHHHHhCCHHH----
Confidence 5567889999999887731111 1224567888888877655 99999999999998 23221
Q ss_pred HhCCChHHHHHHHhccccCCCccchhHHHHHHHHHHHHHhhcCchhhhHHHhcCCcHHHHHhhcCCCHHHHHHHHHHHHH
Q 005044 154 VDNGALSHLVNLLKRHMDSNCSRAVNSVIRRAADAITNLAHENSSIKTRVRMEGGIPPLVELLEFTDTKVQRAAAGALRT 233 (717)
Q Consensus 154 ~~~~~i~~L~~lL~~~~~~~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~ 233 (717)
.....++.+..++.+.+ |.++..++.+|..++..... .......++.+..+++++++.+|..++++|..
T Consensus 239 ~~~~~~~~l~~~~~d~~--------~~vR~~a~~~l~~l~~~~~~---~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~ 307 (588)
T 1b3u_A 239 LEALVMPTLRQAAEDKS--------WRVRYMVADKFTELQKAVGP---EITKTDLVPAFQNLMKDCEAEVRAAASHKVKE 307 (588)
T ss_dssp HHHHTHHHHHHHHTCSS--------HHHHHHHHHTHHHHHHHHCH---HHHHHTHHHHHHHHHTCSSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccCCC--------HHHHHHHHHHHHHHHHHhCc---ccchhHHHHHHHHHhCCCcHHHHHHHHHHHHH
Confidence 22235677777775543 38999999999999863221 11234568899999999999999999999999
Q ss_pred hhccChhh-HHHHHhcCCHHHHHHHHcCCCHHHHHHHHHHHHHhhcCChHHHHHHHHcCChHHHHHhhccCChHHHHHHH
Q 005044 234 LAFKNDEN-KNQIVECNALPTLILMLRSEDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLSSCCSESQREAA 312 (717)
Q Consensus 234 L~~~~~~~-~~~~~~~g~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~l~~L~~ll~~~~~~~~~~a~ 312 (717)
++...... ........+++.+..+++++++.+|..++++|..++..-. .......+++.+..++.+.++++|..++
T Consensus 308 ~~~~~~~~~~~~~~~~~l~p~l~~~l~d~~~~vR~~a~~~l~~l~~~~~---~~~~~~~l~p~l~~~l~d~~~~Vr~~a~ 384 (588)
T 1b3u_A 308 FCENLSADCRENVIMSQILPCIKELVSDANQHVKSALASVIMGLSPILG---KDNTIEHLLPLFLAQLKDECPEVRLNII 384 (588)
T ss_dssp HHHTSCTTTHHHHHHHTHHHHHHHHHTCSCHHHHHHHHTTGGGGHHHHC---HHHHHHHTHHHHHHHHTCSCHHHHHHHH
T ss_pred HHHHhChhhhhhHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhh---HhHHHHHHHHHHHHHhCCCchHHHHHHH
Confidence 98643221 1112234578889999999999999999999999864211 1122345789999999999999999999
Q ss_pred HHHHHHhcCChhhHHHHHhcCChHHHHHHhcCCCHHHHHHHHHHHHHhhcCCCCchhhHhcCChHHHHHhhcCCChhHHH
Q 005044 313 LLLGQFAATDSDCKVHIVQRGAVRPLIEMLQSPDVQLREMSAFALGRLAQDMHNQAGIAHNGGLVPLLKLLDSKNGSLQH 392 (717)
Q Consensus 313 ~~L~~l~~~~~~~~~~l~~~~~l~~L~~~l~~~~~~v~~~a~~~L~~l~~~~~~~~~l~~~~~l~~L~~ll~~~~~~v~~ 392 (717)
.++..+...... ......++|.+..++.+.+..+|..++.++..++..-.. .......++.+.+.+.+.++.++.
T Consensus 385 ~~l~~l~~~~~~---~~~~~~~lp~l~~~~~d~~~~vr~~~~~~l~~l~~~~~~--~~~~~~l~~~l~~~l~d~~~~Vr~ 459 (588)
T 1b3u_A 385 SNLDCVNEVIGI---RQLSQSLLPAIVELAEDAKWRVRLAIIEYMPLLAGQLGV--EFFDEKLNSLCMAWLVDHVYAIRE 459 (588)
T ss_dssp TTCHHHHHHSCH---HHHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHCG--GGCCHHHHHHHHHGGGCSSHHHHH
T ss_pred HHHHHHHHhcCH---HHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHcCH--HHHHHHHHHHHHHHhcCCcHHHHH
Confidence 988888643211 112245678899999999999999999999999853221 122234567788889999999999
Q ss_pred HHHHHHHhccCCCcchHHHHHhcCccccccchh-HHhhhHHHHHHHHHHHHHH-----hhhchHHHHHHHHhhcchhHHH
Q 005044 393 NAAFALYGLADNEDNVADFIRVGGVQKLQDGEF-IVQATKDCVAKTLKRLEEK-----IHGRVLNHLLYLMRVAEKGVQR 466 (717)
Q Consensus 393 ~a~~~L~~l~~~~~~~~~l~~~~~i~~L~~~~~-~~~~~~~~~~~~~~~l~~~-----~~~~~~~~L~~ll~~~~~~v~~ 466 (717)
.++.++..++..-... +.....++.+..... .....+.+....+..+... +...+++.|+.++.++++++|.
T Consensus 460 ~a~~~l~~l~~~~~~~--~~~~~llp~l~~~~~~~~~~~R~~a~~~l~~l~~~~~~~~~~~~~~~~l~~~l~d~~~~Vr~ 537 (588)
T 1b3u_A 460 AATSNLKKLVEKFGKE--WAHATIIPKVLAMSGDPNYLHRMTTLFCINVLSEVCGQDITTKHMLPTVLRMAGDPVANVRF 537 (588)
T ss_dssp HHHHHHHHHHHHHCHH--HHHHHTHHHHHHTTTCSCHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHGGGCSCHHHHH
T ss_pred HHHHHHHHHHHHhCch--hHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhhCCCCCchHHH
Confidence 9999999997532211 112233333332211 1112233333334333322 2456889999999999999999
Q ss_pred HHHHHHHhccCCCCCceeeecCCCHHHHHHHhcCCCchhhhhhHHHHHHhh
Q 005044 467 RVALALAHLCSPDDQRTIFIDGGGLELLLGLLGSTNPKQQLDGAVALFKLA 517 (717)
Q Consensus 467 ~a~~aL~~l~~~~~~~~~~~~~~~l~~L~~ll~~~~~~v~~~a~~~l~~L~ 517 (717)
.++++|+.+...-... ......+|.|..++.++++++|..|+.++..+.
T Consensus 538 ~a~~~l~~l~~~~~~~--~~~~~~~p~l~~l~~d~d~~vr~~a~~al~~l~ 586 (588)
T 1b3u_A 538 NVAKSLQKIGPILDNS--TLQSEVKPILEKLTQDQDVDVKYFAQEALTVLS 586 (588)
T ss_dssp HHHHHHHHHGGGSCHH--HHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHhchh--hhHHHHHHHHHHHcCCCchhHHHHHHHHHHHhh
Confidence 9999999997543221 122456788888889999999999999998765
No 60
>3grl_A General vesicular transport factor P115; vesicle transport, membrane trafficking, membrane tethering, fusion, snare, RAB GTPase, armadillo repeats; 2.00A {Bos taurus} PDB: 3gq2_A 2w3c_A
Probab=99.71 E-value=7.8e-15 Score=153.71 Aligned_cols=336 Identities=14% Similarity=0.155 Sum_probs=254.3
Q ss_pred HHHHHHHHHHHhhhhhccccchHHHHHHHHHHHHHHHHhhcChhhHHHHHhCCChHHHHHhhcCCCCCccccCCCccchH
Q 005044 52 RQALLSEVSAQVNVLNTTFSWLEADRAAAKRATHVLAELAKNEEVVNWIVEGGAVPALVKHLQAPPTSEADRNLKPFEHE 131 (717)
Q Consensus 52 ~~~~~~~i~~l~~~L~~~~~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~g~i~~L~~lL~~~~~~~~~~~~~~~~~~ 131 (717)
.......|+.++..+.+..-.. | |+.|+..|..+++. ++. .+..++++.|+..|+.+..+ .+
T Consensus 16 ~qs~~etI~~L~~Rl~~~tl~e--D---RR~Av~~Lk~~sk~--y~~-~Vg~~~l~~li~~L~~d~~D----------~e 77 (651)
T 3grl_A 16 QHTEAETIQKLCDRVASSTLLD--D---RRNAVRALKSLSKK--YRL-EVGIQAMEHLIHVLQTDRSD----------SE 77 (651)
T ss_dssp --CHHHHHHHHHHHHHHCCSHH--H---HHHHHHHHHHTTTT--TTT-HHHHHTHHHHHHHHHSCTTC----------HH
T ss_pred CCChhhHHHHHHHHHhhccchh--H---HHHHHHHHHHHHHH--hHH-HhhhhhHHHHHHHHhccccc----------HH
Confidence 3446677889999987753322 3 79999999999863 332 34467899999999987663 38
Q ss_pred HHhHHHHHHHHhc-CChh-----------------hHHH-HHhCCChHHHHHHHhccccCCCccchhHHHHHHHHHHHHH
Q 005044 132 VEKGSAFALGLLA-VKPE-----------------HQQL-IVDNGALSHLVNLLKRHMDSNCSRAVNSVIRRAADAITNL 192 (717)
Q Consensus 132 v~~~a~~~L~~l~-~~~~-----------------~~~~-~~~~~~i~~L~~lL~~~~~~~~~~~~~~~~~~a~~~L~~l 192 (717)
+...++.+|.++. .+++ +.+. +.+.+.++.|+.+|+..+- .++..++.+|..+
T Consensus 78 ~v~~~LetL~~l~~~~~~~~~~~~~~~~~~~~~~~~~d~f~~~~~~i~~Ll~lL~~~df--------~vR~~alqlL~~L 149 (651)
T 3grl_A 78 IIGYALDTLYNIISNDEEEEVEENSTRQSEDLGSQFTEIFIKQQENVTLLLSLLEEFDF--------HVRWPGVKLLTSL 149 (651)
T ss_dssp HHHHHHHHHHHHHCCC--------------CHHHHHHHHHHHSTHHHHHHHHHTTCCCH--------HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCCcccccccccccchHHHHHHHHHHHcCCccHHHHHHHhcCccH--------HHHHHHHHHHHHH
Confidence 8889999998876 2221 1222 2356789999999987655 8999999999999
Q ss_pred hhcCch-hhhHHHh-cCCcHHHHHhhcCCCHHHHHHHHHHHHHhhccChhhHHHHHhcCCHHHHHHHHcCCCH----HHH
Q 005044 193 AHENSS-IKTRVRM-EGGIPPLVELLEFTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSEDS----AIH 266 (717)
Q Consensus 193 ~~~~~~-~~~~~~~-~~~i~~L~~ll~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~g~i~~L~~ll~~~~~----~v~ 266 (717)
+...+. .+..+.. .++++.|+.+|.++...+|..++..|.+|+.++.+.++.++-.|+++.|+.+++.+.. .+.
T Consensus 150 ~~~r~~~~Q~~Il~~p~gi~~Lv~lL~d~rE~iRneallLL~~Lt~~n~~iQklVAFEnaFe~Lf~Ii~~Eg~~~Ggivv 229 (651)
T 3grl_A 150 LKQLGPQVQQIILVSPMGVSRLMDLLADSREVIRNDGVLLLQALTRSNGAIQKIVAFENAFERLLDIITEEGNSDGGIVV 229 (651)
T ss_dssp HHHSHHHHHHHHHHSTTHHHHHHGGGGCSSHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHHHTGGGSHHHH
T ss_pred HhcCcHHHHHHHHhCcccHHHHHHHHhCchHHHHHHHHHHHHHHhcCCHHHHHHHHHhccHHHHHHHHHhcCCCccchhH
Confidence 998877 7777774 4899999999999999999999999999999999999999999999999999986543 788
Q ss_pred HHHHHHHHHhhcCChHHHHHHHHcCChHHHHHhhccCChH------HHHH---HHHHHHHHhcC------ChhhHHHHHh
Q 005044 267 YEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLSSCCSE------SQRE---AALLLGQFAAT------DSDCKVHIVQ 331 (717)
Q Consensus 267 ~~a~~~L~~l~~~~~~~~~~~~~~g~l~~L~~ll~~~~~~------~~~~---a~~~L~~l~~~------~~~~~~~l~~ 331 (717)
..|+.+|.+|...++.++..+.+.|+++.|..++..+... ...+ +..++.-+.+. ...++..+.+
T Consensus 230 ~DCL~ll~nLLr~N~sNQ~~FrEt~~i~~L~~LL~~~~~~~~W~~Qk~~N~~~~L~iIrlLv~~~~~~~~t~~nQ~~~~~ 309 (651)
T 3grl_A 230 EDCLILLQNLLKNNNSNQNFFKEGSYIQRMKPWFEVGDENSGWSAQKVTNLHLMLQLVRVLVSPNNPPGATSSCQKAMFQ 309 (651)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHTTCGGGGGGGGCCCSCSSCCCHHHHHHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHcCCHHHHHHHhCCCccccccHHHHHHHHHHHHHHHHHHhCCCCCCCCCHHHHHHHHH
Confidence 9999999999999998989999999999999999754321 2222 44455556543 2356778889
Q ss_pred cCChHHHHHHhcCC--CHHHHHHHHHHHHHhhcCCC-CchhhHhcC-----ChHH----HHHhhcC-CChhHHHHHHHHH
Q 005044 332 RGAVRPLIEMLQSP--DVQLREMSAFALGRLAQDMH-NQAGIAHNG-----GLVP----LLKLLDS-KNGSLQHNAAFAL 398 (717)
Q Consensus 332 ~~~l~~L~~~l~~~--~~~v~~~a~~~L~~l~~~~~-~~~~l~~~~-----~l~~----L~~ll~~-~~~~v~~~a~~~L 398 (717)
.|+++.|++++..+ ...++..|+.+++.+.+++. ++..+.... ..+. |+.++.+ ....+|..++.++
T Consensus 310 ~g~l~~Ll~ll~~~~~p~~i~~~Al~tla~~irgN~~~Q~~fa~~~vp~~~~~p~li~lL~~~~~~~~~~~lR~Aa~~cl 389 (651)
T 3grl_A 310 CGLLQQLCTILMATGVPADILTETINTVSEVIRGCQVNQDYFASVNAPSNPPRPAIVVLLMSMVNERQPFVLRCAVLYCF 389 (651)
T ss_dssp TTHHHHHHHHHTCSSCCHHHHHHHHHHHHHHHTTCHHHHHHHHHCEESSSSCEEHHHHHHHHHTCTTSCHHHHHHHHHHH
T ss_pred CCCHHHHHHHHccCCCCHHHHHHHHHHHHHHHhCCHHHHHHHhhccCCCCCCcChHHHHHHHHhcccccHHHHHHHHHHH
Confidence 99999999998764 67899999999999998654 455555432 1222 3344444 4578899999999
Q ss_pred HhccCCCc-chHHHHH
Q 005044 399 YGLADNED-NVADFIR 413 (717)
Q Consensus 399 ~~l~~~~~-~~~~l~~ 413 (717)
..+..+.+ ....+..
T Consensus 390 ~ay~~~N~~~Q~~i~~ 405 (651)
T 3grl_A 390 QCFLYKNQKGQGEIVS 405 (651)
T ss_dssp HHHHTTCHHHHHHHHH
T ss_pred HHHHhCCHHHHHHHHH
Confidence 98865443 3334443
No 61
>1b3u_A Protein (protein phosphatase PP2A); scaffold protein, phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP: a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A* 3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A 3c5w_A
Probab=99.70 E-value=2.2e-16 Score=175.21 Aligned_cols=398 Identities=14% Similarity=0.078 Sum_probs=273.1
Q ss_pred HHHHHHHHHHHhhcC--hhhHHHHHhCCChHHHHHhhcCCCCCccccCCCccchHHHhHHHHHHHHhc-CChhhHHHHHh
Q 005044 79 AAKRATHVLAELAKN--EEVVNWIVEGGAVPALVKHLQAPPTSEADRNLKPFEHEVEKGSAFALGLLA-VKPEHQQLIVD 155 (717)
Q Consensus 79 ~~~~a~~~L~~l~~~--~~~~~~~~~~g~i~~L~~lL~~~~~~~~~~~~~~~~~~v~~~a~~~L~~l~-~~~~~~~~~~~ 155 (717)
.+..++..+..++.. +.. ....+|.+..++++++. .||..++.+|+.++ ..+. ....
T Consensus 142 ~R~~a~~~l~~~~~~~~~~~-----~~~l~~~l~~l~~d~~~------------~VR~~a~~~l~~l~~~~~~---~~~~ 201 (588)
T 1b3u_A 142 SRTSACGLFSVCYPRVSSAV-----KAELRQYFRNLCSDDTP------------MVRRAAASKLGEFAKVLEL---DNVK 201 (588)
T ss_dssp HHHHHGGGHHHHTTTSCHHH-----HHHHHHHHHHHHTCSCH------------HHHHHHHHHHHHHHHTSCH---HHHH
T ss_pred HHHHHHHHHHHHHHhcCHHH-----HHHHHHHHHHHhCCCCH------------HHHHHHHHHHHHHHHHhcH---HhHH
Confidence 355555555555442 111 12246777777766554 99999999999998 2221 1123
Q ss_pred CCChHHHHHHHhccccCCCccchhHHHHHHHHHHHHHhhcCchhhhHHHhcCCcHHHHHhhcCCCHHHHHHHHHHHHHhh
Q 005044 156 NGALSHLVNLLKRHMDSNCSRAVNSVIRRAADAITNLAHENSSIKTRVRMEGGIPPLVELLEFTDTKVQRAAAGALRTLA 235 (717)
Q Consensus 156 ~~~i~~L~~lL~~~~~~~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~L~ 235 (717)
...++.+..++++.+. .++..|+.+|..++...+.. ......+|.+..++.++++.+|..++.+|..++
T Consensus 202 ~~l~~~l~~~~~d~~~--------~vr~~a~~~l~~l~~~~~~~---~~~~~~~~~l~~~~~d~~~~vR~~a~~~l~~l~ 270 (588)
T 1b3u_A 202 SEIIPMFSNLASDEQD--------SVRLLAVEACVNIAQLLPQE---DLEALVMPTLRQAAEDKSWRVRYMVADKFTELQ 270 (588)
T ss_dssp HTHHHHHHHHHTCSCH--------HHHTTHHHHHHHHHHHSCHH---HHHHHTHHHHHHHHTCSSHHHHHHHHHTHHHHH
T ss_pred HHHHHHHHHHhcCCcH--------HHHHHHHHHHHHHHHhCCHH---HHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHH
Confidence 4567888888876554 89999999999988754321 122346788888999999999999999999998
Q ss_pred ccChhhHHHHHhcCCHHHHHHHHcCCCHHHHHHHHHHHHHhhcCChH-HHHHHHHcCChHHHHHhhccCChHHHHHHHHH
Q 005044 236 FKNDENKNQIVECNALPTLILMLRSEDSAIHYEAVGVIGNLVHSSPN-IKKEVLAAGALQPVIGLLSSCCSESQREAALL 314 (717)
Q Consensus 236 ~~~~~~~~~~~~~g~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~-~~~~~~~~g~l~~L~~ll~~~~~~~~~~a~~~ 314 (717)
..... ......+++.++.+++++++.+|..++++|..++..... .........+++.+..++.+.++.+|..++++
T Consensus 271 ~~~~~---~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~l~p~l~~~l~d~~~~vR~~a~~~ 347 (588)
T 1b3u_A 271 KAVGP---EITKTDLVPAFQNLMKDCEAEVRAAASHKVKEFCENLSADCRENVIMSQILPCIKELVSDANQHVKSALASV 347 (588)
T ss_dssp HHHCH---HHHHHTHHHHHHHHHTCSSHHHHHHHHHHHHHHHHTSCTTTHHHHHHHTHHHHHHHHHTCSCHHHHHHHHTT
T ss_pred HHhCc---ccchhHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHhChhhhhhHHHHHHHHHHHHHhcCCCHHHHHHHHHH
Confidence 52111 122345789999999999999999999999999764321 11112335678889999999999999999999
Q ss_pred HHHHhcCChhhHHHHHhcCChHHHHHHhcCCCHHHHHHHHHHHHHhhcCCCCchhhHhcCChHHHHHhhcCCChhHHHHH
Q 005044 315 LGQFAATDSDCKVHIVQRGAVRPLIEMLQSPDVQLREMSAFALGRLAQDMHNQAGIAHNGGLVPLLKLLDSKNGSLQHNA 394 (717)
Q Consensus 315 L~~l~~~~~~~~~~l~~~~~l~~L~~~l~~~~~~v~~~a~~~L~~l~~~~~~~~~l~~~~~l~~L~~ll~~~~~~v~~~a 394 (717)
|..++.... .......++|.+..+++++++.+|..++.++..++..... .......++.+.+++.+.++.++..+
T Consensus 348 l~~l~~~~~---~~~~~~~l~p~l~~~l~d~~~~Vr~~a~~~l~~l~~~~~~--~~~~~~~lp~l~~~~~d~~~~vr~~~ 422 (588)
T 1b3u_A 348 IMGLSPILG---KDNTIEHLLPLFLAQLKDECPEVRLNIISNLDCVNEVIGI--RQLSQSLLPAIVELAEDAKWRVRLAI 422 (588)
T ss_dssp GGGGHHHHC---HHHHHHHTHHHHHHHHTCSCHHHHHHHHTTCHHHHHHSCH--HHHHHHHHHHHHHHHTCSSHHHHHHH
T ss_pred HHHHHHHhh---HhHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHHHHhcCH--HHHHHHHHHHHHHHhcCCCchHHHHH
Confidence 999873211 1122345789999999999999999999999988863221 12234567778888899999999999
Q ss_pred HHHHHhccCCCcchHHHHHhcCccccccch-hHHhhhHHHHHHHHHHHHHH-----hhhchHHHHHHHHhhcchhHHHHH
Q 005044 395 AFALYGLADNEDNVADFIRVGGVQKLQDGE-FIVQATKDCVAKTLKRLEEK-----IHGRVLNHLLYLMRVAEKGVQRRV 468 (717)
Q Consensus 395 ~~~L~~l~~~~~~~~~l~~~~~i~~L~~~~-~~~~~~~~~~~~~~~~l~~~-----~~~~~~~~L~~ll~~~~~~v~~~a 468 (717)
+.++..++..-... +.....++.+.... ......+......+..+... ....+++.|..++.++++.+|..+
T Consensus 423 ~~~l~~l~~~~~~~--~~~~~l~~~l~~~l~d~~~~Vr~~a~~~l~~l~~~~~~~~~~~~llp~l~~~~~~~~~~~R~~a 500 (588)
T 1b3u_A 423 IEYMPLLAGQLGVE--FFDEKLNSLCMAWLVDHVYAIREAATSNLKKLVEKFGKEWAHATIIPKVLAMSGDPNYLHRMTT 500 (588)
T ss_dssp HHHHHHHHHHHCGG--GCCHHHHHHHHHGGGCSSHHHHHHHHHHHHHHHHHHCHHHHHHHTHHHHHHTTTCSCHHHHHHH
T ss_pred HHHHHHHHHHcCHH--HHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHhCchhHHHHHHHHHHHHhhCCCHHHHHHH
Confidence 99999886421110 00001112222211 11223344444444444332 234678888888888899999999
Q ss_pred HHHHHhccCCCCCceeeecCCCHHHHHHHhcCCCchhhhhhHHHHHHhhhc
Q 005044 469 ALALAHLCSPDDQRTIFIDGGGLELLLGLLGSTNPKQQLDGAVALFKLANK 519 (717)
Q Consensus 469 ~~aL~~l~~~~~~~~~~~~~~~l~~L~~ll~~~~~~v~~~a~~~l~~L~~~ 519 (717)
+.+++.++..-... ......++.|.+++.++++++|..+++++..+...
T Consensus 501 ~~~l~~l~~~~~~~--~~~~~~~~~l~~~l~d~~~~Vr~~a~~~l~~l~~~ 549 (588)
T 1b3u_A 501 LFCINVLSEVCGQD--ITTKHMLPTVLRMAGDPVANVRFNVAKSLQKIGPI 549 (588)
T ss_dssp HHHHHHHHHHHHHH--HHHHHTHHHHHHGGGCSCHHHHHHHHHHHHHHGGG
T ss_pred HHHHHHHHHhcCHH--HHHHHHHHHHHhhCCCCCchHHHHHHHHHHHHHHH
Confidence 99999986532111 12345789999999999999999999999999864
No 62
>3grl_A General vesicular transport factor P115; vesicle transport, membrane trafficking, membrane tethering, fusion, snare, RAB GTPase, armadillo repeats; 2.00A {Bos taurus} PDB: 3gq2_A 2w3c_A
Probab=99.67 E-value=5.4e-14 Score=147.40 Aligned_cols=414 Identities=17% Similarity=0.133 Sum_probs=281.8
Q ss_pred HHHHHHHHhhhhhccccchHHHHHHHHHHHHHHHHhhc-Chh-----------------hHHHHH-hCCChHHHHHhhcC
Q 005044 55 LLSEVSAQVNVLNTTFSWLEADRAAAKRATHVLAELAK-NEE-----------------VVNWIV-EGGAVPALVKHLQA 115 (717)
Q Consensus 55 ~~~~i~~l~~~L~~~~~~~~~~~~~~~~a~~~L~~l~~-~~~-----------------~~~~~~-~~g~i~~L~~lL~~ 115 (717)
....++.++..|.... .|.++...++.+|.++.. +++ ..+.+. +.+.++.|+.+|+.
T Consensus 58 g~~~l~~li~~L~~d~----~D~e~v~~~LetL~~l~~~~~~~~~~~~~~~~~~~~~~~~~d~f~~~~~~i~~Ll~lL~~ 133 (651)
T 3grl_A 58 GIQAMEHLIHVLQTDR----SDSEIIGYALDTLYNIISNDEEEEVEENSTRQSEDLGSQFTEIFIKQQENVTLLLSLLEE 133 (651)
T ss_dssp HHHTHHHHHHHHHSCT----TCHHHHHHHHHHHHHHHCCC--------------CHHHHHHHHHHHSTHHHHHHHHHTTC
T ss_pred hhhhHHHHHHHHhccc----ccHHHHHHHHHHHHHHhCCCCcccccccccccchHHHHHHHHHHHcCCccHHHHHHHhcC
Confidence 4555777788887663 344567888999988665 321 222333 46889999999988
Q ss_pred CCCCccccCCCccchHHHhHHHHHHHHhc-CChh-hHHHHHhC-CChHHHHHHHhccccCCCccchhHHHHHHHHHHHHH
Q 005044 116 PPTSEADRNLKPFEHEVEKGSAFALGLLA-VKPE-HQQLIVDN-GALSHLVNLLKRHMDSNCSRAVNSVIRRAADAITNL 192 (717)
Q Consensus 116 ~~~~~~~~~~~~~~~~v~~~a~~~L~~l~-~~~~-~~~~~~~~-~~i~~L~~lL~~~~~~~~~~~~~~~~~~a~~~L~~l 192 (717)
.+- .+|..++++|..|+ ..++ .++.+... ++++.|+.+|++... .++..++..|.++
T Consensus 134 ~df------------~vR~~alqlL~~L~~~r~~~~Q~~Il~~p~gi~~Lv~lL~d~rE--------~iRneallLL~~L 193 (651)
T 3grl_A 134 FDF------------HVRWPGVKLLTSLLKQLGPQVQQIILVSPMGVSRLMDLLADSRE--------VIRNDGVLLLQAL 193 (651)
T ss_dssp CCH------------HHHHHHHHHHHHHHHHSHHHHHHHHHHSTTHHHHHHGGGGCSSH--------HHHHHHHHHHHHH
T ss_pred ccH------------HHHHHHHHHHHHHHhcCcHHHHHHHHhCcccHHHHHHHHhCchH--------HHHHHHHHHHHHH
Confidence 776 99999999999999 6665 88888855 999999999998765 8899999999999
Q ss_pred hhcCchhhhHHHhcCCcHHHHHhhcCCC----HHHHHHHHHHHHHhhccChhhHHHHHhcCCHHHHHHHHcCCCH-----
Q 005044 193 AHENSSIKTRVRMEGGIPPLVELLEFTD----TKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSEDS----- 263 (717)
Q Consensus 193 ~~~~~~~~~~~~~~~~i~~L~~ll~~~~----~~v~~~a~~~L~~L~~~~~~~~~~~~~~g~i~~L~~ll~~~~~----- 263 (717)
+.++++.++.+...|+++.|+.+++... ..+...++.+|.+|...++.++..+.+.|.++.|..++..+++
T Consensus 194 t~~n~~iQklVAFEnaFe~Lf~Ii~~Eg~~~Ggivv~DCL~ll~nLLr~N~sNQ~~FrEt~~i~~L~~LL~~~~~~~~W~ 273 (651)
T 3grl_A 194 TRSNGAIQKIVAFENAFERLLDIITEEGNSDGGIVVEDCLILLQNLLKNNNSNQNFFKEGSYIQRMKPWFEVGDENSGWS 273 (651)
T ss_dssp HTTCHHHHHHHHHTTHHHHHHHHHHHHTGGGSHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCGGGGGGGGCCCSCSSCCC
T ss_pred hcCCHHHHHHHHHhccHHHHHHHHHhcCCCccchhHHHHHHHHHHHHhcCHHHHHHHHHcCCHHHHHHHhCCCccccccH
Confidence 9999999999999999999999997643 4889999999999999999999999999999999999975432
Q ss_pred -HHHHH---HHHHHHHhhcC------ChHHHHHHHHcCChHHHHHhhccC--ChHHHHHHHHHHHHHhcCChhhHHHHHh
Q 005044 264 -AIHYE---AVGVIGNLVHS------SPNIKKEVLAAGALQPVIGLLSSC--CSESQREAALLLGQFAATDSDCKVHIVQ 331 (717)
Q Consensus 264 -~v~~~---a~~~L~~l~~~------~~~~~~~~~~~g~l~~L~~ll~~~--~~~~~~~a~~~L~~l~~~~~~~~~~l~~ 331 (717)
....+ ++.++.-++.. ...++..+.+.|++..++.++... ...++..|+.+++.+..+++.++..+.+
T Consensus 274 ~Qk~~N~~~~L~iIrlLv~~~~~~~~t~~nQ~~~~~~g~l~~Ll~ll~~~~~p~~i~~~Al~tla~~irgN~~~Q~~fa~ 353 (651)
T 3grl_A 274 AQKVTNLHLMLQLVRVLVSPNNPPGATSSCQKAMFQCGLLQQLCTILMATGVPADILTETINTVSEVIRGCQVNQDYFAS 353 (651)
T ss_dssp HHHHHHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHTTHHHHHHHHHTCSSCCHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHCCCHHHHHHHHccCCCCHHHHHHHHHHHHHHHhCCHHHHHHHhh
Confidence 22333 56666666554 234677889999999999998875 4678999999999999999888887765
Q ss_pred cC---------ChHHHHHHhcC-CCHHHHHHHHHHHHHhhcCCC-CchhhHhc----------CCh---HHHHHhhcCCC
Q 005044 332 RG---------AVRPLIEMLQS-PDVQLREMSAFALGRLAQDMH-NQAGIAHN----------GGL---VPLLKLLDSKN 387 (717)
Q Consensus 332 ~~---------~l~~L~~~l~~-~~~~v~~~a~~~L~~l~~~~~-~~~~l~~~----------~~l---~~L~~ll~~~~ 387 (717)
.. ++..|+.++.+ ....+|.+++.++.....++. .+..++.. +.+ ..+...+.+.+
T Consensus 354 ~~vp~~~~~p~li~lL~~~~~~~~~~~lR~Aa~~cl~ay~~~N~~~Q~~i~~~llp~~~~~~~~~~s~g~ll~~~l~s~d 433 (651)
T 3grl_A 354 VNAPSNPPRPAIVVLLMSMVNERQPFVLRCAVLYCFQCFLYKNQKGQGEIVSTLLPSTIDATGNTVSAGQLLCGGLFSTD 433 (651)
T ss_dssp CEESSSSCEEHHHHHHHHHTCTTSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTSSCCCCCTTSSSCHHHHHHHHHTSSC
T ss_pred ccCCCCCCcChHHHHHHHHhcccccHHHHHHHHHHHHHHHhCCHHHHHHHHHhcCCcccccCCCCCCcchhhhhhhccCc
Confidence 32 33444555555 568899999999999886543 23333221 001 12344444556
Q ss_pred hhHHHHHHHHHHhccCC-CcchHHHHHhcCccccccchhHHhhhHHHHHHHHHHHHHHhhhchHHHHHHHHh-hcchhHH
Q 005044 388 GSLQHNAAFALYGLADN-EDNVADFIRVGGVQKLQDGEFIVQATKDCVAKTLKRLEEKIHGRVLNHLLYLMR-VAEKGVQ 465 (717)
Q Consensus 388 ~~v~~~a~~~L~~l~~~-~~~~~~l~~~~~i~~L~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~L~~ll~-~~~~~v~ 465 (717)
+--...|+.++..+..+ ++.+..+.+-..-.. .+. .+ ...++.+..+|. ..++.++
T Consensus 434 ~~~~wfAavil~hll~~n~~~K~~~l~v~l~~~--~ge---~~-----------------vtliq~~~~~L~~~~~~ri~ 491 (651)
T 3grl_A 434 SLSNWCAAVALAHALQENATQKEQLLRVQLATS--IGN---PP-----------------VSLLQQCTNILSQGSKIQTR 491 (651)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHTTCBCCCC--TTC---CC-----------------CBHHHHHHHHTTTTCCHHHH
T ss_pred hHHHHHHHHHHHHHHcCCHHHHHHHHhCccccc--CCC---Cc-----------------ccHHHHHHHHHhcCCchhHH
Confidence 54445677777777654 444444333110000 000 00 012333333332 2345555
Q ss_pred HHHHHHHHhcc-CCCCCceeeecCC-CHHHHHHHhcCCC----chhhhhhHHHHH
Q 005044 466 RRVALALAHLC-SPDDQRTIFIDGG-GLELLLGLLGSTN----PKQQLDGAVALF 514 (717)
Q Consensus 466 ~~a~~aL~~l~-~~~~~~~~~~~~~-~l~~L~~ll~~~~----~~v~~~a~~~l~ 514 (717)
..-+..|+... .++..-..++..+ .++.|+..+.+.. .-++.-++..|.
T Consensus 492 vgyL~LL~~WL~e~p~AV~dFL~~~s~l~~L~~~i~~~~~~~~~lvqGL~a~LLG 546 (651)
T 3grl_A 492 VGLLMLLCTWLSNCPIAVTHFLHNSANVPFLTGQIAENLGEEEQLVQGLCALLLG 546 (651)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHSTTHHHHHHHHHHSCCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCChHHHHHHHcCCchHHHHHHHHHhccCcchHHHHHHHHHHHH
Confidence 55555555443 3344333344554 5899998775421 224554444443
No 63
>4fdd_A Transportin-1; heat repeats, karyopherin, nuclear import, protein transport importin, transportin, transport protein; 2.30A {Homo sapiens} PDB: 2ot8_A 2h4m_A 2z5k_A 2z5j_A 2qmr_A 2z5m_A 2z5n_A 2z5o_A 1qbk_B*
Probab=99.66 E-value=5.4e-16 Score=179.35 Aligned_cols=376 Identities=14% Similarity=0.109 Sum_probs=263.0
Q ss_pred HHHHHHHHHHHHHHhhcC------hhhHHHHHhCCChHHHHHhhcCCCCCccccCCCccchHHHhHHHHHHHHhc--CCh
Q 005044 76 DRAAAKRATHVLAELAKN------EEVVNWIVEGGAVPALVKHLQAPPTSEADRNLKPFEHEVEKGSAFALGLLA--VKP 147 (717)
Q Consensus 76 ~~~~~~~a~~~L~~l~~~------~~~~~~~~~~g~i~~L~~lL~~~~~~~~~~~~~~~~~~v~~~a~~~L~~l~--~~~ 147 (717)
+..+|..|+-.|.+.... ++.+.. +-+.+++.|.+.+. .+|..++.+++.++ +.+
T Consensus 61 ~~~vR~~a~~~Lkn~i~~~w~~~~~~~~~~-----ik~~ll~~l~~~~~------------~vr~~~a~~i~~ia~~~~~ 123 (852)
T 4fdd_A 61 DEPTRSLSGLILKNNVKAHFQNFPNGVTDF-----IKSECLNNIGDSSP------------LIRATVGILITTIASKGEL 123 (852)
T ss_dssp CHHHHHHHHHHHHHHTTTSGGGCCHHHHHH-----HHHHHHTTTTCSSH------------HHHHHHHHHHHHHHHHTTT
T ss_pred ChHHHHHHHHHHHHHHHHccCCCCHHHHHH-----HHHHHHHHHcCCCH------------HHHHHHHHHHHHHHHhcCc
Confidence 556788888888887652 233332 24667777765444 89999999999998 322
Q ss_pred hhHHHHHhCCChHHHHHHHhccccCCCccchhHHHHHHHHHHHHHhhcCchhhhHHH----hcCCcHHHHHhhcCCCHHH
Q 005044 148 EHQQLIVDNGALSHLVNLLKRHMDSNCSRAVNSVIRRAADAITNLAHENSSIKTRVR----MEGGIPPLVELLEFTDTKV 223 (717)
Q Consensus 148 ~~~~~~~~~~~i~~L~~lL~~~~~~~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~----~~~~i~~L~~ll~~~~~~v 223 (717)
. .-.+.++.|+..+.+.+. .++..++.+|..++...+..-..-. ....++.++++++++++.+
T Consensus 124 ~-----~wp~ll~~L~~~l~~~~~--------~~r~~al~~L~~i~~~~~~~~~~~~~~~~~~~il~~l~~~l~~~~~~v 190 (852)
T 4fdd_A 124 Q-----NWPDLLPKLCSLLDSEDY--------NTCEGAFGALQKICEDSAEILDSDVLDRPLNIMIPKFLQFFKHSSPKI 190 (852)
T ss_dssp T-----TCTTHHHHHHHHHSCSSH--------HHHHHHHHHHHHHHHHHTTHHHHCSSSSCHHHHHHHHTTTTTCSSHHH
T ss_pred c-----ccHHHHHHHHHHHcCCCH--------HHHHHHHHHHHHHHHHhHHHhchhhhcchHHHHHHHHHHHhcCCCHHH
Confidence 1 123567888888876554 7899999999999975443211000 1235677888888999999
Q ss_pred HHHHHHHHHHhhccChhhHHHHHhcCCHHHHHHHHcCCCHHHHHHHHHHHHHhhcCChHHHHHHHHcCChHHHHHhhccC
Q 005044 224 QRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSEDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLSSC 303 (717)
Q Consensus 224 ~~~a~~~L~~L~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~l~~L~~ll~~~ 303 (717)
|..|+++|..+....+....... .++++.+..++.++++.++..++++|..++...+....... .++++.++.++.+.
T Consensus 191 R~~A~~aL~~~~~~~~~~~~~~~-~~~l~~l~~~~~d~~~~vr~~a~~~L~~l~~~~~~~~~~~l-~~l~~~l~~~~~~~ 268 (852)
T 4fdd_A 191 RSHAVACVNQFIISRTQALMLHI-DSFIENLFALAGDEEPEVRKNVCRALVMLLEVRMDRLLPHM-HNIVEYMLQRTQDQ 268 (852)
T ss_dssp HHHHHHHHHTTTTTTCHHHHTSH-HHHHHHHHHHHTCCCHHHHHHHHHHHHHHHHHCHHHHGGGH-HHHHHHHHHHHTCS
T ss_pred HHHHHHHHHHHHhcccHHHHHHH-HHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHhCHHHHHHHH-HHHHHHHHHHccCC
Confidence 99999999988754332111111 24678888889999999999999999999876554322212 24678888888988
Q ss_pred ChHHHHHHHHHHHHHhcCChhhHHHHH--hcCChHHHHHHh-----------cC-----------CCHHHHHHHHHHHHH
Q 005044 304 CSESQREAALLLGQFAATDSDCKVHIV--QRGAVRPLIEML-----------QS-----------PDVQLREMSAFALGR 359 (717)
Q Consensus 304 ~~~~~~~a~~~L~~l~~~~~~~~~~l~--~~~~l~~L~~~l-----------~~-----------~~~~v~~~a~~~L~~ 359 (717)
++.++..|+..+..++... ..+..+. -..+++.++..+ .+ .+..+|..+..+|..
T Consensus 269 ~~~vr~~a~e~l~~l~~~~-~~~~~~~~~~~~l~p~ll~~l~~~e~d~~~~~~d~~ed~~~dd~~~~~~vr~~a~~~L~~ 347 (852)
T 4fdd_A 269 DENVALEACEFWLTLAEQP-ICKDVLVRHLPKLIPVLVNGMKYSDIDIILLKGDVEGGSGGDDTISDWNLRKCSAAALDV 347 (852)
T ss_dssp SHHHHHHHHHHHHHHTTST-THHHHHTTTHHHHHHHHHHHTSCCHHHHHHHHC------------CCCCHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHhcch-hHHHHHHHHHHHHHHHHHHHcCCcHhHHHHhcCCcccccccccccccchHHHHHHHHHHH
Confidence 9999999999999997532 2222111 124567777776 22 123468899999999
Q ss_pred hhcCCCCchhhHhcCChHHHHHhhcCCChhHHHHHHHHHHhccCCCcchHHHHHhcCccccccchhHHhhhHHHHHHHHH
Q 005044 360 LAQDMHNQAGIAHNGGLVPLLKLLDSKNGSLQHNAAFALYGLADNEDNVADFIRVGGVQKLQDGEFIVQATKDCVAKTLK 439 (717)
Q Consensus 360 l~~~~~~~~~l~~~~~l~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~l~~~~~i~~L~~~~~~~~~~~~~~~~~~~ 439 (717)
++...+ ..+ -...++.+.+.+.+.++.+|..|+++|.+++.+... . .. .
T Consensus 348 la~~~~--~~~-~~~l~~~l~~~l~~~~~~~R~aa~~alg~i~~~~~~--~-~~-~------------------------ 396 (852)
T 4fdd_A 348 LANVYR--DEL-LPHILPLLKELLFHHEWVVKESGILVLGAIAEGCMQ--G-MI-P------------------------ 396 (852)
T ss_dssp HHHHHG--GGG-HHHHHHHHHHHHTCSSHHHHHHHHHHHHHTTTTTHH--H-HG-G------------------------
T ss_pred HHHhcc--HHH-HHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcchH--H-HH-H------------------------
Confidence 986432 122 223566677888889999999999999999875432 1 11 0
Q ss_pred HHHHHhhhchHHHHHHHHhhcchhHHHHHHHHHHhccCCCC-CceeeecCCCHHHHHHHhcCCCchhhhhhHHHHHHhhh
Q 005044 440 RLEEKIHGRVLNHLLYLMRVAEKGVQRRVALALAHLCSPDD-QRTIFIDGGGLELLLGLLGSTNPKQQLDGAVALFKLAN 518 (717)
Q Consensus 440 ~l~~~~~~~~~~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~-~~~~~~~~~~l~~L~~ll~~~~~~v~~~a~~~l~~L~~ 518 (717)
.-.++++.++.++.++++.||..++++|++++.... ......-.+.++.|+..+.++++.+|..|++++.+++.
T Consensus 397 -----~l~~~l~~l~~~l~d~~~~Vr~~a~~~l~~l~~~~~~~~~~~~~~~ll~~L~~~L~d~~~~vr~~a~~aL~~l~~ 471 (852)
T 4fdd_A 397 -----YLPELIPHLIQCLSDKKALVRSITCWTLSRYAHWVVSQPPDTYLKPLMTELLKRILDSNKRVQEAACSAFATLEE 471 (852)
T ss_dssp -----GHHHHHHHHHHHTTCSSHHHHHHHHHHHHHTHHHHHHSCTTTTHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHH
T ss_pred -----HHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHH
Confidence 112378889999999999999999999999975321 11111123567888899988999999999999999987
Q ss_pred cc
Q 005044 519 KA 520 (717)
Q Consensus 519 ~~ 520 (717)
..
T Consensus 472 ~~ 473 (852)
T 4fdd_A 472 EA 473 (852)
T ss_dssp HH
T ss_pred Hh
Confidence 53
No 64
>4fdd_A Transportin-1; heat repeats, karyopherin, nuclear import, protein transport importin, transportin, transport protein; 2.30A {Homo sapiens} PDB: 2ot8_A 2h4m_A 2z5k_A 2z5j_A 2qmr_A 2z5m_A 2z5n_A 2z5o_A 1qbk_B*
Probab=99.64 E-value=4.1e-15 Score=172.02 Aligned_cols=430 Identities=14% Similarity=0.058 Sum_probs=261.4
Q ss_pred HhhhhhccccchHHHHHHHHHHHHHHHHhhcChhhHHHHHhCCChHHHHHhhcCCCCCccccCCCccchHHHhHHHHHHH
Q 005044 62 QVNVLNTTFSWLEADRAAAKRATHVLAELAKNEEVVNWIVEGGAVPALVKHLQAPPTSEADRNLKPFEHEVEKGSAFALG 141 (717)
Q Consensus 62 l~~~L~~~~~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~g~i~~L~~lL~~~~~~~~~~~~~~~~~~v~~~a~~~L~ 141 (717)
+++.|...+... +..++..|+++|..+.........-.-.+.++.++.++.+++. ++|..++++|.
T Consensus 175 il~~l~~~l~~~--~~~vR~~A~~aL~~~~~~~~~~~~~~~~~~l~~l~~~~~d~~~------------~vr~~a~~~L~ 240 (852)
T 4fdd_A 175 MIPKFLQFFKHS--SPKIRSHAVACVNQFIISRTQALMLHIDSFIENLFALAGDEEP------------EVRKNVCRALV 240 (852)
T ss_dssp HHHHHTTTTTCS--SHHHHHHHHHHHHTTTTTTCHHHHTSHHHHHHHHHHHHTCCCH------------HHHHHHHHHHH
T ss_pred HHHHHHHHhcCC--CHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHcCCCCH------------HHHHHHHHHHH
Confidence 344444444433 4567999999999887632111100012457788888776655 99999999999
Q ss_pred Hhc-CChhhHHHHHhCCChHHHHHHHhccccCCCccchhHHHHHHHHHHHHHhhcCchhhhHHH--hcCCcHHHHHhh--
Q 005044 142 LLA-VKPEHQQLIVDNGALSHLVNLLKRHMDSNCSRAVNSVIRRAADAITNLAHENSSIKTRVR--MEGGIPPLVELL-- 216 (717)
Q Consensus 142 ~l~-~~~~~~~~~~~~~~i~~L~~lL~~~~~~~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~--~~~~i~~L~~ll-- 216 (717)
.++ ..++.-..... +.++.++..+++.+. +++..|+..+..++... ..+..+. ....+|.++..+
T Consensus 241 ~l~~~~~~~~~~~l~-~l~~~l~~~~~~~~~--------~vr~~a~e~l~~l~~~~-~~~~~~~~~~~~l~p~ll~~l~~ 310 (852)
T 4fdd_A 241 MLLEVRMDRLLPHMH-NIVEYMLQRTQDQDE--------NVALEACEFWLTLAEQP-ICKDVLVRHLPKLIPVLVNGMKY 310 (852)
T ss_dssp HHHHHCHHHHGGGHH-HHHHHHHHHHTCSSH--------HHHHHHHHHHHHHTTST-THHHHHTTTHHHHHHHHHHHTSC
T ss_pred HHHHhCHHHHHHHHH-HHHHHHHHHccCCcH--------HHHHHHHHHHHHHhcch-hHHHHHHHHHHHHHHHHHHHcCC
Confidence 999 44443211111 356667777665443 89999999999998632 2222111 112355666655
Q ss_pred ---------cC-----------CCHHHHHHHHHHHHHhhccChhhHHHHHhcCCHHHHHHHHcCCCHHHHHHHHHHHHHh
Q 005044 217 ---------EF-----------TDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSEDSAIHYEAVGVIGNL 276 (717)
Q Consensus 217 ---------~~-----------~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~v~~~a~~~L~~l 276 (717)
.+ .++.++..+..+|..++...++ .+.. .+++.+...+.+++..+|..|+++|+++
T Consensus 311 ~e~d~~~~~~d~~ed~~~dd~~~~~~vr~~a~~~L~~la~~~~~---~~~~-~l~~~l~~~l~~~~~~~R~aa~~alg~i 386 (852)
T 4fdd_A 311 SDIDIILLKGDVEGGSGGDDTISDWNLRKCSAAALDVLANVYRD---ELLP-HILPLLKELLFHHEWVVKESGILVLGAI 386 (852)
T ss_dssp CHHHHHHHHC------------CCCCHHHHHHHHHHHHHHHHGG---GGHH-HHHHHHHHHHTCSSHHHHHHHHHHHHHT
T ss_pred cHhHHHHhcCCcccccccccccccchHHHHHHHHHHHHHHhccH---HHHH-HHHHHHHHHhcCCCHHHHHHHHHHHHHH
Confidence 22 2345788999999999863221 1221 3577888888899999999999999999
Q ss_pred hcCChHHHHHHHHcCChHHHHHhhccCChHHHHHHHHHHHHHhcCChhhHHHHHhcCChHHHHHHhcCCCHHHHHHHHHH
Q 005044 277 VHSSPNIKKEVLAAGALQPVIGLLSSCCSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQSPDVQLREMSAFA 356 (717)
Q Consensus 277 ~~~~~~~~~~~~~~g~l~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~l~~~~~l~~L~~~l~~~~~~v~~~a~~~ 356 (717)
+.+...... -.-.++++.++.++.++++.+|..+++++++++...........-.++++.|+..+.++++.++..|+++
T Consensus 387 ~~~~~~~~~-~~l~~~l~~l~~~l~d~~~~Vr~~a~~~l~~l~~~~~~~~~~~~~~~ll~~L~~~L~d~~~~vr~~a~~a 465 (852)
T 4fdd_A 387 AEGCMQGMI-PYLPELIPHLIQCLSDKKALVRSITCWTLSRYAHWVVSQPPDTYLKPLMTELLKRILDSNKRVQEAACSA 465 (852)
T ss_dssp TTTTHHHHG-GGHHHHHHHHHHHTTCSSHHHHHHHHHHHHHTHHHHHHSCTTTTHHHHHHHHHHHHTCSSHHHHHHHHHH
T ss_pred HhcchHHHH-HHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHhCCCHHHHHHHHHH
Confidence 876554222 1224678999999999999999999999999975321111111123567888999988999999999999
Q ss_pred HHHhhcCCCCchhhHhcCChHHHHHhhcCCChhHHHHHHHHHHhccC----------------------------CCcch
Q 005044 357 LGRLAQDMHNQAGIAHNGGLVPLLKLLDSKNGSLQHNAAFALYGLAD----------------------------NEDNV 408 (717)
Q Consensus 357 L~~l~~~~~~~~~l~~~~~l~~L~~ll~~~~~~v~~~a~~~L~~l~~----------------------------~~~~~ 408 (717)
|.+++......-.-.-.+.++.|+.++...+......+..++..++. .....
T Consensus 466 L~~l~~~~~~~l~~~l~~ll~~L~~~l~~~~~~~~~~~~~ai~~l~~~~~~~~~~~~~~~~l~p~l~~~~~~l~d~~~~~ 545 (852)
T 4fdd_A 466 FATLEEEACTELVPYLAYILDTLVFAFSKYQHKNLLILYDAIGTLADSVGHHLNKPEYIQMLMPPLIQKWNMLKDEDKDL 545 (852)
T ss_dssp HHHHHHHHGGGGGGGHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHGGGGCCHHHHHHHHHHHHHHHHHSCTTCTTH
T ss_pred HHHHHHHhhHhhHhHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHhhhhhccHHHHHHHHHHHHHHHHhcccccHHH
Confidence 99999643222111223445556666655544444444444444431 00000
Q ss_pred H-------HHHHh---cCccc-------cccchhHH------------------hhhHHHHHHHHHHHHHHh--------
Q 005044 409 A-------DFIRV---GGVQK-------LQDGEFIV------------------QATKDCVAKTLKRLEEKI-------- 445 (717)
Q Consensus 409 ~-------~l~~~---~~i~~-------L~~~~~~~------------------~~~~~~~~~~~~~l~~~~-------- 445 (717)
. .+... +..+. +.+..... .....+....+..+....
T Consensus 546 ~~~~~~l~~i~~~~g~~~~~~~~~i~~~~~~~l~~~l~~~~~~~~~~~~~~~~d~~~~~~~l~~l~~l~~~l~~~~~~~~ 625 (852)
T 4fdd_A 546 FPLLECLSSVATALQSGFLPYCEPVYQRCVNLVQKTLAQAMLNNAQPDQYEAPDKDFMIVALDLLSGLAEGLGGNIEQLV 625 (852)
T ss_dssp HHHHHHHHHHHHHHGGGGHHHHHHHHHHHHHHHHHHHHHHHHHHHCTTTSCCCCTHHHHHHHHHHHHHHHHHGGGGHHHH
T ss_pred HHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCcccCCCcchHHHHHHHHHHHHHHHHhHhHHHHh
Confidence 0 00000 00000 00000000 001111122222222211
Q ss_pred -hhchHHHHHHHHhhcchhHHHHHHHHHHhccCCCCCceeeecCCCHHHHHHHhcCCCchhhhhhHHHHHHhhhcc
Q 005044 446 -HGRVLNHLLYLMRVAEKGVQRRVALALAHLCSPDDQRTIFIDGGGLELLLGLLGSTNPKQQLDGAVALFKLANKA 520 (717)
Q Consensus 446 -~~~~~~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~~~~~~l~~L~~ll~~~~~~v~~~a~~~l~~L~~~~ 520 (717)
..++++.++..+.++++.+|..+..+++.++..-.......-...+|.+.+.+..+++.++..|+|++..++...
T Consensus 626 ~~~~~~~~l~~~l~~~~~~vr~~a~~~l~~l~~~~~~~~~~~l~~~lp~l~~~l~~~~~~v~~~a~~alg~i~~~~ 701 (852)
T 4fdd_A 626 ARSNILTLMYQCMQDKMPEVRQSSFALLGDLTKACFQHVKPCIADFMPILGTNLNPEFISVCNNATWAIGEISIQM 701 (852)
T ss_dssp HTCCHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHCGGGTGGGHHHHHHHHHHTCCTTSHHHHHHHHHHHHHHHHHH
T ss_pred cCCcHHHHHHHHhCCCChhHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHcCccchHHHHHHHHHHHHHHHHh
Confidence 256788888888888899999999999999743221111111236788888888888899999999999998763
No 65
>1ibr_B P95, importin beta-1 subunit, nuclear factor; small GTPase, nuclear transport receptor, cell cycle, translation; HET: GNP; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1m5n_S 1gcj_A 1f59_A 1o6o_A 1o6p_A
Probab=99.57 E-value=1.6e-13 Score=147.03 Aligned_cols=379 Identities=12% Similarity=0.050 Sum_probs=247.3
Q ss_pred HHHHHHHHHHHHHHhhcChhhHHHHHhCCChHHHHHhhcCCCCCccccCCCccchHHHhHHHHHHHHhcCCh-hhHH---
Q 005044 76 DRAAAKRATHVLAELAKNEEVVNWIVEGGAVPALVKHLQAPPTSEADRNLKPFEHEVEKGSAFALGLLAVKP-EHQQ--- 151 (717)
Q Consensus 76 ~~~~~~~a~~~L~~l~~~~~~~~~~~~~g~i~~L~~lL~~~~~~~~~~~~~~~~~~v~~~a~~~L~~l~~~~-~~~~--- 151 (717)
+..++..|-..|..+..+. ..+.+..|+.++.+.+. ++.+|..|+..|.++.... ....
T Consensus 14 d~~~r~~Ae~~L~~~~~~~-------~~~~~~~L~~il~~~~~----------~~~vR~~a~~~Lk~~i~~~~~~~~~~~ 76 (462)
T 1ibr_B 14 DRLELEAAQKFLERAAVEN-------LPTFLVELSRVLANPGN----------SQVARVAAGLQIKNSLTSKDPDIKAQY 76 (462)
T ss_dssp CHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHCTTS----------CHHHHHHHHHHHHHHHCCSSHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHhhC-------hHHHHHHHHHHHHcCCC----------ChHHHHHHHHHHHHhccccchHHHHHH
Confidence 3446788888887755420 11245677788876533 2389999999999987321 0000
Q ss_pred --HH------HhCCChHHHHHHHhccccCCCccchhHHHHHHHHHHHHHhhcCchhhhHHHhcCCcHHHHHhhcCC--CH
Q 005044 152 --LI------VDNGALSHLVNLLKRHMDSNCSRAVNSVIRRAADAITNLAHENSSIKTRVRMEGGIPPLVELLEFT--DT 221 (717)
Q Consensus 152 --~~------~~~~~i~~L~~lL~~~~~~~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~--~~ 221 (717)
.. .....-..++..|.+.+. .+ ..++.++..++........ -.+.++.|+..+.++ ++
T Consensus 77 ~~~~~~l~~~~~~~ik~~ll~~l~~~~~--------~v-~~~~~~i~~ia~~~~~~~~---w~~ll~~L~~~l~~~~~~~ 144 (462)
T 1ibr_B 77 QQRWLAIDANARREVKNYVLQTLGTETY--------RP-SSASQCVAGIACAEIPVNQ---WPELIPQLVANVTNPNSTE 144 (462)
T ss_dssp HHHHHTSCHHHHHHHHHHHHHHTTCCCS--------SS-CSHHHHHHHHHHHHGGGTC---CTTHHHHHHHHHHCTTCCH
T ss_pred HhhhhcCCHHHHHHHHHHHHHHhCCCCc--------hh-hHHHHHHHHHHHHhccccc---cHHHHHHHHHHhccCCCCH
Confidence 00 011123446666766544 45 6678888888764321111 135678899999888 89
Q ss_pred HHHHHHHHHHHHhhccC-hhhHHHHHhcCCHHHHHHHHcCC--CHHHHHHHHHHHHHhhcCChHHHH-HHHHcCChHHHH
Q 005044 222 KVQRAAAGALRTLAFKN-DENKNQIVECNALPTLILMLRSE--DSAIHYEAVGVIGNLVHSSPNIKK-EVLAAGALQPVI 297 (717)
Q Consensus 222 ~v~~~a~~~L~~L~~~~-~~~~~~~~~~g~i~~L~~ll~~~--~~~v~~~a~~~L~~l~~~~~~~~~-~~~~~g~l~~L~ 297 (717)
.++..++.+|..++... +....... ..+++.++..+.++ ++.+|..|++++.++...-..... .....-+++.+.
T Consensus 145 ~~r~~al~~l~~l~~~~~~~~~~~~~-~~ll~~l~~~l~~~~~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~l~~~l~ 223 (462)
T 1ibr_B 145 HMKESTLEAIGYICQDIDPEQLQDKS-NEILTAIIQGMRKEEPSNNVKLAATNALLNSLEFTKANFDKESERHFIMQVVC 223 (462)
T ss_dssp HHHHHHHHHHHHHHHHSCGGGTGGGH-HHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHTTTTHHHHTSHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhCCchhhHhHH-HHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHH
Confidence 99999999999998632 22111111 23678888999887 789999999999997543221110 001111466666
Q ss_pred HhhccCChHHHHHHHHHHHHHhcCChhhHHHHHhcCChHHHHHHhcCCCHHHHHHHHHHHHHhhcCC-------------
Q 005044 298 GLLSSCCSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQSPDVQLREMSAFALGRLAQDM------------- 364 (717)
Q Consensus 298 ~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~l~~~~~l~~L~~~l~~~~~~v~~~a~~~L~~l~~~~------------- 364 (717)
..+.+.+++++..++.++..++...+.........++++.++..+++.++.++..+++.+..++...
T Consensus 224 ~~~~~~~~~vr~~~~~~l~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~v~~~a~~~l~~~~~~~~~~~~~~~~~~~~ 303 (462)
T 1ibr_B 224 EATQCPDTRVRVAALQNLVKIMSLYYQYMETYMGPALFAITIEAMKSDIDEVALQGIEFWSNVCDEEMDLAIEASEAAEQ 303 (462)
T ss_dssp HHTTCSSHHHHHHHHHHHHHHHHHCGGGCTTTTTTTHHHHHHHHHHCSSHHHHHHHHHHHHHHHHHHHHHHHHHCCTTCS
T ss_pred HhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHHHHHHHHHHHhccccccc
Confidence 7777888999999999999998654433222222267788888888899999999999999988542
Q ss_pred -----CCchhhHh---cCChHHHHHhhcC-------CChhHHHHHHHHHHhccCCCcchHHHHHhcCccccccchhHHhh
Q 005044 365 -----HNQAGIAH---NGGLVPLLKLLDS-------KNGSLQHNAAFALYGLADNEDNVADFIRVGGVQKLQDGEFIVQA 429 (717)
Q Consensus 365 -----~~~~~l~~---~~~l~~L~~ll~~-------~~~~v~~~a~~~L~~l~~~~~~~~~l~~~~~i~~L~~~~~~~~~ 429 (717)
.....+.+ ...++.+++.+.. .++.++..|+.+|..++..-.. .
T Consensus 304 ~~~~~~~~~~~~~~~~~~l~p~l~~~l~~~d~d~~~~~~~~r~~a~~~L~~l~~~~~~--~------------------- 362 (462)
T 1ibr_B 304 GRPPEHTSKFYAKGALQYLVPILTQTLTKQDENDDDDDWNPCKAAGVCLMLLATCCED--D------------------- 362 (462)
T ss_dssp SSCSSCCCCCHHHHHHHHHHHHHHHHTTCCCSSCCTTCCSHHHHHHHHHHHHHHHTTT--T-------------------
T ss_pred CCCccchhHHHHHHHhhhccHHHHHHHHhcccccccccchHHHHHHHHHHHHHHhccH--H-------------------
Confidence 00111111 2234445555532 2456777777777777542211 0
Q ss_pred hHHHHHHHHHHHHHHhhhchHHHHHHHHhhcchhHHHHHHHHHHhccCCCC-CceeeecCCCHHHHHHHhcCCCchhhhh
Q 005044 430 TKDCVAKTLKRLEEKIHGRVLNHLLYLMRVAEKGVQRRVALALAHLCSPDD-QRTIFIDGGGLELLLGLLGSTNPKQQLD 508 (717)
Q Consensus 430 ~~~~~~~~~~~l~~~~~~~~~~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~-~~~~~~~~~~l~~L~~ll~~~~~~v~~~ 508 (717)
+-..+++.+...+.++++.+|..++.+|+.++.+.. ....-.-...+|.|+.++.++++.+|..
T Consensus 363 ---------------~~~~~~~~l~~~l~~~~~~~r~aal~~l~~l~~~~~~~~~~~~l~~~~~~l~~~l~d~~~~Vr~~ 427 (462)
T 1ibr_B 363 ---------------IVPHVLPFIKEHIKNPDWRYRDAAVMAFGCILEGPEPSQLKPLVIQAMPTLIELMKDPSVVVRDT 427 (462)
T ss_dssp ---------------HHHHHHHHHHHHTTCSSHHHHHHHHHHHHHTSSSSCTTTTCTTTTTHHHHHHHGGGCSCHHHHHH
T ss_pred ---------------HHHHHHHHHHHHhcCCChHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHhcCCCHHHHHH
Confidence 011256677778888999999999999999987643 1111112568899999999999999999
Q ss_pred hHHHHHHhhhcc
Q 005044 509 GAVALFKLANKA 520 (717)
Q Consensus 509 a~~~l~~L~~~~ 520 (717)
|+++|.+++...
T Consensus 428 a~~~l~~~~~~~ 439 (462)
T 1ibr_B 428 AAWTVGRICELL 439 (462)
T ss_dssp HHHHHHHHHHHG
T ss_pred HHHHHHHHHHhc
Confidence 999999999864
No 66
>1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16
Probab=99.57 E-value=3.8e-13 Score=133.39 Aligned_cols=257 Identities=16% Similarity=0.137 Sum_probs=198.8
Q ss_pred HhCCChHHHHHHHhccccCCCccchhHHHHHHHHHHHHHhhcCchhhhHHHhcCCcHHHHHhhcCCCHHHHHHHHHHHHH
Q 005044 154 VDNGALSHLVNLLKRHMDSNCSRAVNSVIRRAADAITNLAHENSSIKTRVRMEGGIPPLVELLEFTDTKVQRAAAGALRT 233 (717)
Q Consensus 154 ~~~~~i~~L~~lL~~~~~~~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~ 233 (717)
...+.++.|+..|.+.+. .++..|++.|.++.. .+.++.|+.++.++++.+|..|+++|..
T Consensus 20 ~~~~~i~~L~~~L~~~~~--------~vr~~A~~~L~~~~~-----------~~~~~~L~~~l~d~~~~vR~~A~~aL~~ 80 (280)
T 1oyz_A 20 CKKLNDDELFRLLDDHNS--------LKRISSARVLQLRGG-----------QDAVRLAIEFCSDKNYIRRDIGAFILGQ 80 (280)
T ss_dssp HHTSCHHHHHHHTTCSSH--------HHHHHHHHHHHHHCC-----------HHHHHHHHHHHTCSSHHHHHHHHHHHHH
T ss_pred HHHhhHHHHHHHHHcCCH--------HHHHHHHHHHHccCC-----------chHHHHHHHHHcCCCHHHHHHHHHHHHH
Confidence 345678999999987655 899999999998762 1356889999999999999999999999
Q ss_pred hhccChhhHHHHHhcCCHHHHH-HHHcCCCHHHHHHHHHHHHHhhcCChHHHHHHHHcCChHHHHHhhccCChHHHHHHH
Q 005044 234 LAFKNDENKNQIVECNALPTLI-LMLRSEDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLSSCCSESQREAA 312 (717)
Q Consensus 234 L~~~~~~~~~~~~~~g~i~~L~-~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~l~~L~~ll~~~~~~~~~~a~ 312 (717)
+... +.... .+++.|. .+++++++.++..++++|+.+...++... ...++.|..++.++++.++..++
T Consensus 81 l~~~-~~~~~-----~l~~~L~~~~~~d~~~~vr~~a~~aL~~l~~~~~~~~-----~~~~~~L~~~l~d~~~~vR~~a~ 149 (280)
T 1oyz_A 81 IKIC-KKCED-----NVFNILNNMALNDKSACVRATAIESTAQRCKKNPIYS-----PKIVEQSQITAFDKSTNVRRATA 149 (280)
T ss_dssp SCCC-TTTHH-----HHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHCGGGH-----HHHHHHHHHHTTCSCHHHHHHHH
T ss_pred hccc-cccch-----HHHHHHHHHHhcCCCHHHHHHHHHHHHHHhccCCccc-----HHHHHHHHHHhhCCCHHHHHHHH
Confidence 8742 22111 1234444 35678899999999999999964332221 23478899999999999999999
Q ss_pred HHHHHHhcCChhhHHHHHhcCChHHHHHHhcCCCHHHHHHHHHHHHHhhcCCCCchhhHhcCChHHHHHhhcCCChhHHH
Q 005044 313 LLLGQFAATDSDCKVHIVQRGAVRPLIEMLQSPDVQLREMSAFALGRLAQDMHNQAGIAHNGGLVPLLKLLDSKNGSLQH 392 (717)
Q Consensus 313 ~~L~~l~~~~~~~~~~l~~~~~l~~L~~~l~~~~~~v~~~a~~~L~~l~~~~~~~~~l~~~~~l~~L~~ll~~~~~~v~~ 392 (717)
.+|+++.. .+.++.|+.++.++++.+|..++++|+.+.... ...++.|..++.+.++.++.
T Consensus 150 ~aL~~~~~-----------~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~~~--------~~~~~~L~~~l~d~~~~vR~ 210 (280)
T 1oyz_A 150 FAISVIND-----------KATIPLLINLLKDPNGDVRNWAAFAININKYDN--------SDIRDCFVEMLQDKNEEVRI 210 (280)
T ss_dssp HHHHTC--------------CCHHHHHHHHTCSSHHHHHHHHHHHHHHTCCC--------HHHHHHHHHHTTCSCHHHHH
T ss_pred HHHHhcCC-----------HHHHHHHHHHHcCCCHHHHHHHHHHHHhhccCc--------HHHHHHHHHHhcCCCHHHHH
Confidence 99998742 347899999999999999999999999985321 23567899999999999999
Q ss_pred HHHHHHHhccCCCcchHHHHHhcCccccccchhHHhhhHHHHHHHHHHHHHHhhhchHHHHHHHHhhcchhHHHHHHHHH
Q 005044 393 NAAFALYGLADNEDNVADFIRVGGVQKLQDGEFIVQATKDCVAKTLKRLEEKIHGRVLNHLLYLMRVAEKGVQRRVALAL 472 (717)
Q Consensus 393 ~a~~~L~~l~~~~~~~~~l~~~~~i~~L~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~L~~ll~~~~~~v~~~a~~aL 472 (717)
.++++|.++... ..++.|+.++.+++ ++..++.+|
T Consensus 211 ~A~~aL~~~~~~-------------------------------------------~~~~~L~~~l~d~~--vr~~a~~aL 245 (280)
T 1oyz_A 211 EAIIGLSYRKDK-------------------------------------------RVLSVLCDELKKNT--VYDDIIEAA 245 (280)
T ss_dssp HHHHHHHHTTCG-------------------------------------------GGHHHHHHHHTSSS--CCHHHHHHH
T ss_pred HHHHHHHHhCCH-------------------------------------------hhHHHHHHHhcCcc--HHHHHHHHH
Confidence 999999988621 15677888887744 899999999
Q ss_pred HhccCCCCCceeeecCCCHHHHHHHhcC-CCchhhhhhHHHHH
Q 005044 473 AHLCSPDDQRTIFIDGGGLELLLGLLGS-TNPKQQLDGAVALF 514 (717)
Q Consensus 473 ~~l~~~~~~~~~~~~~~~l~~L~~ll~~-~~~~v~~~a~~~l~ 514 (717)
+.+.. ...++.|..++.+ +++++...+..++.
T Consensus 246 ~~i~~----------~~~~~~L~~~l~~~~~~~~~~~~~~~l~ 278 (280)
T 1oyz_A 246 GELGD----------KTLLPVLDTMLYKFDDNEIITSAIDKLK 278 (280)
T ss_dssp HHHCC----------GGGHHHHHHHHTTSSCCHHHHHHHHHHT
T ss_pred HhcCc----------hhhhHHHHHHHhcCCCcHHHHHHHHHhh
Confidence 99853 2578999999865 67777777776664
No 67
>1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16
Probab=99.56 E-value=5.9e-13 Score=132.01 Aligned_cols=229 Identities=15% Similarity=0.080 Sum_probs=182.7
Q ss_pred hcCCcHHHHHhhcCCCHHHHHHHHHHHHHhhccChhhHHHHHhcCCHHHHHHHHcCCCHHHHHHHHHHHHHhhcCChHHH
Q 005044 205 MEGGIPPLVELLEFTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSEDSAIHYEAVGVIGNLVHSSPNIK 284 (717)
Q Consensus 205 ~~~~i~~L~~ll~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~ 284 (717)
..+.++.|+..|.++++.+|..|+++|.++.. .+.++.|+.++.++++.++..|+++|+.+.......
T Consensus 21 ~~~~i~~L~~~L~~~~~~vr~~A~~~L~~~~~-----------~~~~~~L~~~l~d~~~~vR~~A~~aL~~l~~~~~~~- 88 (280)
T 1oyz_A 21 KKLNDDELFRLLDDHNSLKRISSARVLQLRGG-----------QDAVRLAIEFCSDKNYIRRDIGAFILGQIKICKKCE- 88 (280)
T ss_dssp HTSCHHHHHHHTTCSSHHHHHHHHHHHHHHCC-----------HHHHHHHHHHHTCSSHHHHHHHHHHHHHSCCCTTTH-
T ss_pred HHhhHHHHHHHHHcCCHHHHHHHHHHHHccCC-----------chHHHHHHHHHcCCCHHHHHHHHHHHHHhccccccc-
Confidence 34678999999999999999999999999872 235788999999999999999999999985332211
Q ss_pred HHHHHcCChHHHH-HhhccCChHHHHHHHHHHHHHhcCChhhHHHHHhcCChHHHHHHhcCCCHHHHHHHHHHHHHhhcC
Q 005044 285 KEVLAAGALQPVI-GLLSSCCSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQSPDVQLREMSAFALGRLAQD 363 (717)
Q Consensus 285 ~~~~~~g~l~~L~-~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~l~~~~~l~~L~~~l~~~~~~v~~~a~~~L~~l~~~ 363 (717)
. .+++.|. .++.++++.++..++++|+++...++... ...++.|...+.++++.+|..++++|+++..
T Consensus 89 ~-----~l~~~L~~~~~~d~~~~vr~~a~~aL~~l~~~~~~~~-----~~~~~~L~~~l~d~~~~vR~~a~~aL~~~~~- 157 (280)
T 1oyz_A 89 D-----NVFNILNNMALNDKSACVRATAIESTAQRCKKNPIYS-----PKIVEQSQITAFDKSTNVRRATAFAISVIND- 157 (280)
T ss_dssp H-----HHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHCGGGH-----HHHHHHHHHHTTCSCHHHHHHHHHHHHTC---
T ss_pred h-----HHHHHHHHHHhcCCCHHHHHHHHHHHHHHhccCCccc-----HHHHHHHHHHhhCCCHHHHHHHHHHHHhcCC-
Confidence 1 1234444 34577889999999999999974433222 2357889999999999999999999998754
Q ss_pred CCCchhhHhcCChHHHHHhhcCCChhHHHHHHHHHHhccCCCcchHHHHHhcCccccccchhHHhhhHHHHHHHHHHHHH
Q 005044 364 MHNQAGIAHNGGLVPLLKLLDSKNGSLQHNAAFALYGLADNEDNVADFIRVGGVQKLQDGEFIVQATKDCVAKTLKRLEE 443 (717)
Q Consensus 364 ~~~~~~l~~~~~l~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~l~~~~~i~~L~~~~~~~~~~~~~~~~~~~~l~~ 443 (717)
...++.|++++.++++.++..++++|..+....+
T Consensus 158 ---------~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~~~~------------------------------------- 191 (280)
T 1oyz_A 158 ---------KATIPLLINLLKDPNGDVRNWAAFAININKYDNS------------------------------------- 191 (280)
T ss_dssp ----------CCHHHHHHHHTCSSHHHHHHHHHHHHHHTCCCH-------------------------------------
T ss_pred ---------HHHHHHHHHHHcCCCHHHHHHHHHHHHhhccCcH-------------------------------------
Confidence 2478999999999999999999999998853221
Q ss_pred HhhhchHHHHHHHHhhcchhHHHHHHHHHHhccCCCCCceeeecCCCHHHHHHHhcCCCchhhhhhHHHHHHhhh
Q 005044 444 KIHGRVLNHLLYLMRVAEKGVQRRVALALAHLCSPDDQRTIFIDGGGLELLLGLLGSTNPKQQLDGAVALFKLAN 518 (717)
Q Consensus 444 ~~~~~~~~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~~~~~~l~~L~~ll~~~~~~v~~~a~~~l~~L~~ 518 (717)
.+++.|+.++.++++.+|..++++|+++. ....++.|..++.++ +++..|+++|.++..
T Consensus 192 ----~~~~~L~~~l~d~~~~vR~~A~~aL~~~~----------~~~~~~~L~~~l~d~--~vr~~a~~aL~~i~~ 250 (280)
T 1oyz_A 192 ----DIRDCFVEMLQDKNEEVRIEAIIGLSYRK----------DKRVLSVLCDELKKN--TVYDDIIEAAGELGD 250 (280)
T ss_dssp ----HHHHHHHHHTTCSCHHHHHHHHHHHHHTT----------CGGGHHHHHHHHTSS--SCCHHHHHHHHHHCC
T ss_pred ----HHHHHHHHHhcCCCHHHHHHHHHHHHHhC----------CHhhHHHHHHHhcCc--cHHHHHHHHHHhcCc
Confidence 15677899999999999999999999985 346799999999874 489999999988854
No 68
>2vgl_B AP-2 complex subunit beta-1; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Homo sapiens} SCOP: i.23.1.1 PDB: 2jkt_B 2jkr_B* 2xa7_B 1w63_B
Probab=99.52 E-value=4.2e-13 Score=147.49 Aligned_cols=366 Identities=16% Similarity=0.131 Sum_probs=253.0
Q ss_pred hhhhhccccchHHHHHHHHHHHHHHHHhhcChhhHHHHHhCCChHHHHHhhcCCCCCccccCCCccchHHHhHHHHHHHH
Q 005044 63 VNVLNTTFSWLEADRAAAKRATHVLAELAKNEEVVNWIVEGGAVPALVKHLQAPPTSEADRNLKPFEHEVEKGSAFALGL 142 (717)
Q Consensus 63 ~~~L~~~~~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~g~i~~L~~lL~~~~~~~~~~~~~~~~~~v~~~a~~~L~~ 142 (717)
+..+...+.+ +++.++..|+++|+++. +++....+ ++.+.++|.+.++ .||..|+.++.+
T Consensus 88 ~n~l~kdL~~--~n~~ir~~AL~~L~~i~-~~~~~~~l-----~~~l~~~L~d~~~------------~VRk~A~~al~~ 147 (591)
T 2vgl_B 88 VNSFVKDCED--PNPLIRALAVRTMGCIR-VDKITEYL-----CEPLRKCLKDEDP------------YVRKTAAVCVAK 147 (591)
T ss_dssp HHHHGGGSSS--SSHHHHHHHHHHHHTCC-SGGGHHHH-----HHHHHHHSSCSCH------------HHHHHHHHHHHH
T ss_pred HHHHHHHcCC--CCHHHHHHHHHHHHcCC-hHHHHHHH-----HHHHHHHcCCCCh------------HHHHHHHHHHHH
Confidence 3444444444 35567888888888775 34444433 5788899987655 999999999999
Q ss_pred hc-CChhhHHHHHhCCChHHHHHHHhccccCCCccchhHHHHHHHHHHHHHhhcCchhhhHHHhcCCcHHHHHhhcCCCH
Q 005044 143 LA-VKPEHQQLIVDNGALSHLVNLLKRHMDSNCSRAVNSVIRRAADAITNLAHENSSIKTRVRMEGGIPPLVELLEFTDT 221 (717)
Q Consensus 143 l~-~~~~~~~~~~~~~~i~~L~~lL~~~~~~~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~ 221 (717)
+. .+++.. .+.+.++.+..+|.+.+. .++..|+.+|..++..++.........+.+..|+..+.+.++
T Consensus 148 i~~~~p~~~---~~~~~~~~l~~lL~d~d~--------~V~~~A~~aL~~i~~~~~~~~~~~l~~~~~~~Ll~~l~~~~~ 216 (591)
T 2vgl_B 148 LHDINAQMV---EDQGFLDSLRDLIADSNP--------MVVANAVAALSEISESHPNSNLLDLNPQNINKLLTALNECTE 216 (591)
T ss_dssp HHHSSCCCH---HHHHHHHHHHHTTSCSCH--------HHHHHHHHHHHHHTTSCCSCCSCCCHHHHHHHHHHHHHHCCH
T ss_pred HHhhChhhc---ccccHHHHHHHHhCCCCh--------hHHHHHHHHHHHHHhhCCCccchhccHHHHHHHHHcCCCCCc
Confidence 99 555532 224667889999987655 899999999999998665431111112235667777777888
Q ss_pred HHHHHHHHHHHHhhccChhhHHHHHhcCCHHHHHHHHcCCCHHHHHHHHHHHHHhhcC---ChHHHHHHHHcCChHHHHH
Q 005044 222 KVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSEDSAIHYEAVGVIGNLVHS---SPNIKKEVLAAGALQPVIG 298 (717)
Q Consensus 222 ~v~~~a~~~L~~L~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~---~~~~~~~~~~~g~l~~L~~ 298 (717)
-.+...+.+|..++..++... ..+++.+..++++.++.|+..|++++..+... +++..+. +...+.+.|+.
T Consensus 217 ~~q~~il~~l~~l~~~~~~~~-----~~~l~~l~~~l~~~~~~V~~ea~~~i~~l~~~~~~~~~~~~~-~~~~~~~~L~~ 290 (591)
T 2vgl_B 217 WGQIFILDCLSNYNPKDDREA-----QSICERVTPRLSHANSAVVLSAVKVLMKFLELLPKDSDYYNM-LLKKLAPPLVT 290 (591)
T ss_dssp HHHHHHHHHHHTSCCCSHHHH-----HHHHHHHTTCSCSSTTHHHHHHHHHHHHSCCSCCBTTBSHHH-HHHHTHHHHHH
T ss_pred hHHHHHHHHHHHhCCCChHHH-----HHHHHHHHHHHcCCChHHHHHHHHHHHHHhhccCCCHHHHHH-HHHHHHHHHHH
Confidence 889999999988875433322 23567788888999999999999999998642 2332222 22345677776
Q ss_pred hhccCChHHHHHHHHHHHHHhcCChhhHHHHHhcCChHHHHHHhcCCCHHHHHHHHHHHHHhhcCCCCchhhHhcCChHH
Q 005044 299 LLSSCCSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQSPDVQLREMSAFALGRLAQDMHNQAGIAHNGGLVP 378 (717)
Q Consensus 299 ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~l~~~~~l~~L~~~l~~~~~~v~~~a~~~L~~l~~~~~~~~~l~~~~~l~~ 378 (717)
++. +++.++..++.++..+....+.... . .+..+. .+.+++..+|..+++.|.+++... +.. ..+..
T Consensus 291 L~~-~d~~vr~~aL~~l~~i~~~~p~~~~----~-~~~~~~-~~~~d~~~Ir~~al~~L~~l~~~~-nv~-----~iv~~ 357 (591)
T 2vgl_B 291 LLS-GEPEVQYVALRNINLIVQKRPEILK----Q-EIKVFF-VKYNDPIYVKLEKLDIMIRLASQA-NIA-----QVLAE 357 (591)
T ss_dssp HTT-SCHHHHHHHHHHHHHHHHHCCSTTT----T-CTTTTS-CCTTSCHHHHHHHHHHHHHTCCSS-THH-----HHHHH
T ss_pred Hhc-CCccHHHHHHHHHHHHHHhChHHHH----H-HHHhhe-eccCChHHHHHHHHHHHHHHCChh-hHH-----HHHHH
Confidence 664 7789999999999999765443211 1 111121 112445899999999999988543 211 24556
Q ss_pred HHHhhcCCChhHHHHHHHHHHhccCCCcchHHHHHhcCccccccchhHHhhhHHHHHHHHHHHHHHhhhchHHHHHHHHh
Q 005044 379 LLKLLDSKNGSLQHNAAFALYGLADNEDNVADFIRVGGVQKLQDGEFIVQATKDCVAKTLKRLEEKIHGRVLNHLLYLMR 458 (717)
Q Consensus 379 L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~l~~~~~i~~L~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~L~~ll~ 458 (717)
|...+.+.+.+++..++++|..++..-.. . ...+++.|+.++.
T Consensus 358 L~~~l~~~d~~~r~~~v~aI~~la~~~~~--~-----------------------------------~~~~v~~Ll~ll~ 400 (591)
T 2vgl_B 358 LKEYATEVDVDFVRKAVRAIGRCAIKVEQ--S-----------------------------------AERCVSTLLDLIQ 400 (591)
T ss_dssp HHHHTTSSCHHHHHHHHHHHHHHHTTCHH--H-----------------------------------HHHHHHHHHHHHH
T ss_pred HHHHHhcCCHHHHHHHHHHHHHHHHhChh--H-----------------------------------HHHHHHHHHHHHc
Confidence 77888888999999999999999864211 0 1125677888888
Q ss_pred hcchhHHHHHHHHHHhccCCCCCceeeecCCCHHHHHHHhcC-CCchhhhhhHHHHHHhhhc
Q 005044 459 VAEKGVQRRVALALAHLCSPDDQRTIFIDGGGLELLLGLLGS-TNPKQQLDGAVALFKLANK 519 (717)
Q Consensus 459 ~~~~~v~~~a~~aL~~l~~~~~~~~~~~~~~~l~~L~~ll~~-~~~~v~~~a~~~l~~L~~~ 519 (717)
+.+..++..++.++.++....... ...+++.|...+++ ..+.++..++|++...+..
T Consensus 401 ~~~~~v~~e~i~~l~~ii~~~p~~----~~~~v~~L~~~l~~~~~~~~~~~~~wilGey~~~ 458 (591)
T 2vgl_B 401 TKVNYVVQEAIVVIRDIFRKYPNK----YESIIATLCENLDSLDEPDARAAMIWIVGEYAER 458 (591)
T ss_dssp TCCHHHHHHHHHHHHHHHHHSCSS----CCTTHHHHHHTTTTCCSHHHHHHHHHHHHTTCTT
T ss_pred ccchHHHHHHHHHHHHHHHHCcch----HHHHHHHHHHHHHhccCHHHHHHHHHHHHccccc
Confidence 888888888888888875432211 24678888888864 6677888888888776653
No 69
>2vgl_B AP-2 complex subunit beta-1; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Homo sapiens} SCOP: i.23.1.1 PDB: 2jkt_B 2jkr_B* 2xa7_B 1w63_B
Probab=99.48 E-value=2.2e-12 Score=141.75 Aligned_cols=354 Identities=17% Similarity=0.132 Sum_probs=251.1
Q ss_pred HHHHHHHHHHHHHhhc-ChhhHHHHHhCCChHHHHHhhcCCCCCccccCCCccchHHHhHHHHHHHHhcCChhhHHHHHh
Q 005044 77 RAAAKRATHVLAELAK-NEEVVNWIVEGGAVPALVKHLQAPPTSEADRNLKPFEHEVEKGSAFALGLLAVKPEHQQLIVD 155 (717)
Q Consensus 77 ~~~~~~a~~~L~~l~~-~~~~~~~~~~~g~i~~L~~lL~~~~~~~~~~~~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~ 155 (717)
...+..+.-.+..++. +++... -+++.+.+-|+++++ .+|..|+++|+++. .++....
T Consensus 63 ~~~Krl~yl~l~~~~~~~~e~~~-----l~~n~l~kdL~~~n~------------~ir~~AL~~L~~i~-~~~~~~~--- 121 (591)
T 2vgl_B 63 LELKKLVYLYLMNYAKSQPDMAI-----MAVNSFVKDCEDPNP------------LIRALAVRTMGCIR-VDKITEY--- 121 (591)
T ss_dssp HHHHHHHHHHHHHHHHHSHHHHH-----TTHHHHGGGSSSSSH------------HHHHHHHHHHHTCC-SGGGHHH---
T ss_pred HHHHHHHHHHHHHHcccCchHHH-----HHHHHHHHHcCCCCH------------HHHHHHHHHHHcCC-hHHHHHH---
Confidence 3345555556666655 444322 246677777776655 99999999999987 4443322
Q ss_pred CCChHHHHHHHhccccCCCccchhHHHHHHHHHHHHHhhcCchhhhHHHhcCCcHHHHHhhcCCCHHHHHHHHHHHHHhh
Q 005044 156 NGALSHLVNLLKRHMDSNCSRAVNSVIRRAADAITNLAHENSSIKTRVRMEGGIPPLVELLEFTDTKVQRAAAGALRTLA 235 (717)
Q Consensus 156 ~~~i~~L~~lL~~~~~~~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~L~ 235 (717)
.++.+..++.+.++ .++..|+.++.+++..+++. +...+.++.+..+|.++++.++..|+.+|..++
T Consensus 122 --l~~~l~~~L~d~~~--------~VRk~A~~al~~i~~~~p~~---~~~~~~~~~l~~lL~d~d~~V~~~A~~aL~~i~ 188 (591)
T 2vgl_B 122 --LCEPLRKCLKDEDP--------YVRKTAAVCVAKLHDINAQM---VEDQGFLDSLRDLIADSNPMVVANAVAALSEIS 188 (591)
T ss_dssp --HHHHHHHHSSCSCH--------HHHHHHHHHHHHHHHSSCCC---HHHHHHHHHHHHTTSCSCHHHHHHHHHHHHHHT
T ss_pred --HHHHHHHHcCCCCh--------HHHHHHHHHHHHHHhhChhh---cccccHHHHHHHHhCCCChhHHHHHHHHHHHHH
Confidence 25678888876655 89999999999999866543 223467899999999999999999999999999
Q ss_pred ccChhhHHHHHhcCCHHHHHHHHcCCCHHHHHHHHHHHHHhhcCChHHHHHHHHcCChHHHHHhhccCChHHHHHHHHHH
Q 005044 236 FKNDENKNQIVECNALPTLILMLRSEDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLSSCCSESQREAALLL 315 (717)
Q Consensus 236 ~~~~~~~~~~~~~g~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~l~~L~~ll~~~~~~~~~~a~~~L 315 (717)
..+++....-...+.+..|+..+.+.++-.+...+.++..++..++... ..+++.+..++++.++.++.+|++++
T Consensus 189 ~~~~~~~~~~l~~~~~~~Ll~~l~~~~~~~q~~il~~l~~l~~~~~~~~-----~~~l~~l~~~l~~~~~~V~~ea~~~i 263 (591)
T 2vgl_B 189 ESHPNSNLLDLNPQNINKLLTALNECTEWGQIFILDCLSNYNPKDDREA-----QSICERVTPRLSHANSAVVLSAVKVL 263 (591)
T ss_dssp TSCCSCCSCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHTSCCCSHHHH-----HHHHHHHTTCSCSSTTHHHHHHHHHH
T ss_pred hhCCCccchhccHHHHHHHHHcCCCCCchHHHHHHHHHHHhCCCChHHH-----HHHHHHHHHHHcCCChHHHHHHHHHH
Confidence 7554321000011236667777778888888899999988875444322 23577888888999999999999999
Q ss_pred HHHhcC---ChhhHHHHHhcCChHHHHHHhcCCCHHHHHHHHHHHHHhhcCCCCchhhHhcCChHHHHHhhcCCChhHHH
Q 005044 316 GQFAAT---DSDCKVHIVQRGAVRPLIEMLQSPDVQLREMSAFALGRLAQDMHNQAGIAHNGGLVPLLKLLDSKNGSLQH 392 (717)
Q Consensus 316 ~~l~~~---~~~~~~~l~~~~~l~~L~~~l~~~~~~v~~~a~~~L~~l~~~~~~~~~l~~~~~l~~L~~ll~~~~~~v~~ 392 (717)
..+... +++....+ -..+.+.|+.++ ++++.+|..++.+|..++...+.. +.. .+..+. .+.+++..++.
T Consensus 264 ~~l~~~~~~~~~~~~~~-~~~~~~~L~~L~-~~d~~vr~~aL~~l~~i~~~~p~~---~~~-~~~~~~-~~~~d~~~Ir~ 336 (591)
T 2vgl_B 264 MKFLELLPKDSDYYNML-LKKLAPPLVTLL-SGEPEVQYVALRNINLIVQKRPEI---LKQ-EIKVFF-VKYNDPIYVKL 336 (591)
T ss_dssp HHSCCSCCBTTBSHHHH-HHHTHHHHHHHT-TSCHHHHHHHHHHHHHHHHHCCST---TTT-CTTTTS-CCTTSCHHHHH
T ss_pred HHHhhccCCCHHHHHHH-HHHHHHHHHHHh-cCCccHHHHHHHHHHHHHHhChHH---HHH-HHHhhe-eccCChHHHHH
Confidence 998632 23333322 234567777666 488999999999999998743221 111 111121 22344589999
Q ss_pred HHHHHHHhccCCCcchHHHHHhcCccccccchhHHhhhHHHHHHHHHHHHHHhhhchHHHHHHHHhhcchhHHHHHHHHH
Q 005044 393 NAAFALYGLADNEDNVADFIRVGGVQKLQDGEFIVQATKDCVAKTLKRLEEKIHGRVLNHLLYLMRVAEKGVQRRVALAL 472 (717)
Q Consensus 393 ~a~~~L~~l~~~~~~~~~l~~~~~i~~L~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~L~~ll~~~~~~v~~~a~~aL 472 (717)
.++.+|.+++... +... +++.|..++.+.+.+++..++++|
T Consensus 337 ~al~~L~~l~~~~-nv~~--------------------------------------iv~~L~~~l~~~d~~~r~~~v~aI 377 (591)
T 2vgl_B 337 EKLDIMIRLASQA-NIAQ--------------------------------------VLAELKEYATEVDVDFVRKAVRAI 377 (591)
T ss_dssp HHHHHHHHTCCSS-THHH--------------------------------------HHHHHHHHTTSSCHHHHHHHHHHH
T ss_pred HHHHHHHHHCChh-hHHH--------------------------------------HHHHHHHHHhcCCHHHHHHHHHHH
Confidence 9999999998533 3221 566688888888999999999999
Q ss_pred HhccCCCCCceeeecCCCHHHHHHHhcCCCchhhhhhHHHHHHhhhc
Q 005044 473 AHLCSPDDQRTIFIDGGGLELLLGLLGSTNPKQQLDGAVALFKLANK 519 (717)
Q Consensus 473 ~~l~~~~~~~~~~~~~~~l~~L~~ll~~~~~~v~~~a~~~l~~L~~~ 519 (717)
++++..... .....++.|+.++.+.+..++..+..++.++...
T Consensus 378 ~~la~~~~~----~~~~~v~~Ll~ll~~~~~~v~~e~i~~l~~ii~~ 420 (591)
T 2vgl_B 378 GRCAIKVEQ----SAERCVSTLLDLIQTKVNYVVQEAIVVIRDIFRK 420 (591)
T ss_dssp HHHHTTCHH----HHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhChh----HHHHHHHHHHHHHcccchHHHHHHHHHHHHHHHH
Confidence 999876321 1245789999999999999999999999998875
No 70
>1qgr_A Protein (importin beta subunit); transport receptor, nuclear import, heat motif, NLS-binding; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qgk_A 2p8q_A 2q5d_A 3lww_A 1ukl_A 2qna_A
Probab=99.48 E-value=3.2e-13 Score=157.22 Aligned_cols=433 Identities=16% Similarity=0.115 Sum_probs=258.5
Q ss_pred HHHhhhhhccccchHHHHHHHHHHHHHHHHhhcC-hhhH-HHHHhCCChHHHHHhhcCCCCCccccCCCccchHHHhHHH
Q 005044 60 SAQVNVLNTTFSWLEADRAAAKRATHVLAELAKN-EEVV-NWIVEGGAVPALVKHLQAPPTSEADRNLKPFEHEVEKGSA 137 (717)
Q Consensus 60 ~~l~~~L~~~~~~~~~~~~~~~~a~~~L~~l~~~-~~~~-~~~~~~g~i~~L~~lL~~~~~~~~~~~~~~~~~~v~~~a~ 137 (717)
+.+++.+...+...+.+..++..++.+|..++.. ...- ........++.+..++.+.+. ++|..++
T Consensus 171 ~~ll~~l~~~l~~~~~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~il~~l~~~~~~~~~------------~vr~~a~ 238 (876)
T 1qgr_A 171 NEILTAIIQGMRKEEPSNNVKLAATNALLNSLEFTKANFDKESERHFIMQVVCEATQCPDT------------RVRVAAL 238 (876)
T ss_dssp HHHHHHHHHHHSTTCSCHHHHHHHHHHHHHHGGGCHHHHTSHHHHHHHHHHHHHHTTCSSH------------HHHHHHH
T ss_pred HHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHcCCCCH------------HHHHHHH
Confidence 3444444444433322345788999999987752 2110 001111246667776654443 8999999
Q ss_pred HHHHHhc-CChhhHHHHHhCCChHHHHHHHhccccCCCccchhHHHHHHHHHHHHHhhcCch------------------
Q 005044 138 FALGLLA-VKPEHQQLIVDNGALSHLVNLLKRHMDSNCSRAVNSVIRRAADAITNLAHENSS------------------ 198 (717)
Q Consensus 138 ~~L~~l~-~~~~~~~~~~~~~~i~~L~~lL~~~~~~~~~~~~~~~~~~a~~~L~~l~~~~~~------------------ 198 (717)
.+|..++ ..++.-........++.++..+.+.+. .++..++..+..++.....
T Consensus 239 ~~l~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~--------~v~~~al~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~ 310 (876)
T 1qgr_A 239 QNLVKIMSLYYQYMETYMGPALFAITIEAMKSDID--------EVALQGIEFWSNVCDEEMDLAIEASEAAEQGRPPEHT 310 (876)
T ss_dssp HHHHHHHHHSGGGCHHHHTTTHHHHHHHHHTCSSH--------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCCSSC
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHHhcCCch--------HHHHHHHHHHHHHHHHHHhHhhhhccccccCCCccch
Confidence 9999999 444332222333567777776655433 7888999888888753210
Q ss_pred hhhHH--HhcCCcHHHHHhhc-------CCCHHHHHHHHHHHHHhhccChhhHHHHHhcCCHHHHHHHHcCCCHHHHHHH
Q 005044 199 IKTRV--RMEGGIPPLVELLE-------FTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSEDSAIHYEA 269 (717)
Q Consensus 199 ~~~~~--~~~~~i~~L~~ll~-------~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~v~~~a 269 (717)
..... .-...++.++..+. ++++.+|..+..+|..++....+ .+. ..+++.+...+.+++..+|..+
T Consensus 311 ~~~~~~~~~~~ll~~ll~~l~~~~~d~~~~~~~~r~~a~~~l~~l~~~~~~---~~~-~~~l~~l~~~l~~~~~~~r~~a 386 (876)
T 1qgr_A 311 SKFYAKGALQYLVPILTQTLTKQDENDDDDDWNPCKAAGVCLMLLATCCED---DIV-PHVLPFIKEHIKNPDWRYRDAA 386 (876)
T ss_dssp CCCHHHHHHHHHHHHHHHHTTCCCSSCCTTCCCHHHHHHHHHHHHHHHHGG---GGH-HHHHHHHHHHTTCSSHHHHHHH
T ss_pred hHHHHHHHHHHHhHHHHHHhhcccccccccccHHHHHHHHHHHHHHHHCcH---hhH-HHHHHHHHHHccCCChHHHHHH
Confidence 00000 01234566777664 24578999999999999863221 112 1356677778888999999999
Q ss_pred HHHHHHhhcCCh-HHHHHHHHcCChHHHHHhhccCChHHHHHHHHHHHHHhcCChhhH-HHHHhcCChHHHHHHhcCCCH
Q 005044 270 VGVIGNLVHSSP-NIKKEVLAAGALQPVIGLLSSCCSESQREAALLLGQFAATDSDCK-VHIVQRGAVRPLIEMLQSPDV 347 (717)
Q Consensus 270 ~~~L~~l~~~~~-~~~~~~~~~g~l~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~-~~l~~~~~l~~L~~~l~~~~~ 347 (717)
+++++.++.+.. ..... .-..+++.++..+.++++.+|..|++++++++...+... ..-.-..+++.++..+.++ +
T Consensus 387 ~~~l~~i~~~~~~~~~~~-~~~~~l~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~~l~~~l~~l~~~l~~~-~ 464 (876)
T 1qgr_A 387 VMAFGCILEGPEPSQLKP-LVIQAMPTLIELMKDPSVVVRDTAAWTVGRICELLPEAAINDVYLAPLLQCLIEGLSAE-P 464 (876)
T ss_dssp HHHHHHTSSSSCHHHHHH-HHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHCGGGTSSTTTHHHHHHHHHHHTTSC-H
T ss_pred HHHHHHHHcCCCHHHHHH-HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhCchhcccHHHHHHHHHHHHHHHcCC-H
Confidence 999999987643 22222 224578899999999999999999999999986433210 0001134677888888774 8
Q ss_pred HHHHHHHHHHHHhhcCCC------------Cchhh--HhcCChHHHHHhhcCC---ChhHHHHHHHHHHhccCCCc-chH
Q 005044 348 QLREMSAFALGRLAQDMH------------NQAGI--AHNGGLVPLLKLLDSK---NGSLQHNAAFALYGLADNED-NVA 409 (717)
Q Consensus 348 ~v~~~a~~~L~~l~~~~~------------~~~~l--~~~~~l~~L~~ll~~~---~~~v~~~a~~~L~~l~~~~~-~~~ 409 (717)
.++..++++|.+++.... ....+ .-...++.|++.+... +..++..+..++..++.... ...
T Consensus 465 ~v~~~a~~al~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~il~~L~~~l~~~~~~~~~~r~~~~~~l~~l~~~~~~~~~ 544 (876)
T 1qgr_A 465 RVASNVCWAFSSLAEAAYEAADVADDQEEPATYCLSSSFELIVQKLLETTDRPDGHQNNLRSSAYESLMEIVKNSAKDCY 544 (876)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTSCTTSCCCCCCCSSTTTHHHHHHHHHHHTTSCSSCSTTHHHHHHHHHHHHHHTCCSTTH
T ss_pred HHHHHHHHHHHHHHHHhhhccccccccccccchhhhHhHHHHHHHHHHHHhCcCcchhhHHHHHHHHHHHHHHHCchhhH
Confidence 999999999999986321 00001 1123566666776553 45788888888888854321 111
Q ss_pred HHHHhcCccccccchhH----------------HhhhHHHHHHHHHHHHH--------HhhhchHHHHHHHHhhcc--hh
Q 005044 410 DFIRVGGVQKLQDGEFI----------------VQATKDCVAKTLKRLEE--------KIHGRVLNHLLYLMRVAE--KG 463 (717)
Q Consensus 410 ~l~~~~~i~~L~~~~~~----------------~~~~~~~~~~~~~~l~~--------~~~~~~~~~L~~ll~~~~--~~ 463 (717)
.+.. ..++.+...... ....+..+...+..+.. -+-..+++.++.++.+.. +.
T Consensus 545 ~~~~-~l~~~l~~~l~~~~~~~~~~~~~~d~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~ 623 (876)
T 1qgr_A 545 PAVQ-KTTLVIMERLQQVLQMESHIQSTSDRIQFNDLQSLLCATLQNVLRKVQHQDALQISDVVMASLLRMFQSTAGSGG 623 (876)
T ss_dssp HHHH-HHHHHHHHHHHHHHTTTTSCCSTTHHHHHHHHHHHHHHHHHHHHTTSCHHHHHTTHHHHHHHHHHHC-----CCH
T ss_pred HHHH-HHHHHHHHHHHHHHHHHhccCChhhHHHHHHHHHHHHHHHHHHHHHhChhhhhHHHHHHHHHHHHHHHhccCCCC
Confidence 1111 111111111000 01111222222222211 122457778888887764 47
Q ss_pred HHHHHHHHHHhccCCCCCceeeecCCCHHHHHHHhcCC-CchhhhhhHHHHHHhhhc
Q 005044 464 VQRRVALALAHLCSPDDQRTIFIDGGGLELLLGLLGST-NPKQQLDGAVALFKLANK 519 (717)
Q Consensus 464 v~~~a~~aL~~l~~~~~~~~~~~~~~~l~~L~~ll~~~-~~~v~~~a~~~l~~L~~~ 519 (717)
++..++.+++.++........-.-...++.|...+.+. ++.++..|.+++..|+..
T Consensus 624 v~~~a~~~l~~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vr~~a~~~l~~l~~~ 680 (876)
T 1qgr_A 624 VQEDALMAVSTLVEVLGGEFLKYMEAFKPFLGIGLKNYAEYQVCLAAVGLVGDLCRA 680 (876)
T ss_dssp HHHHHHHHHHHHHHHHGGGGGGGHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHcCcchHHHHHHHHHHHHHHHHH
Confidence 89999999999875422111111134678888888876 889999999999999875
No 71
>2bpt_A Importin beta-1 subunit; nuclear transport, nucleocytoplasmic transport, nuclear trafficking, importin- beta, complex; 1.99A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 2bku_B 3ea5_B* 3nd2_A
Probab=99.47 E-value=1.4e-12 Score=151.56 Aligned_cols=416 Identities=14% Similarity=0.107 Sum_probs=256.0
Q ss_pred HHHHHHHHHHHHHHhhc-ChhhH-HHHHhCCChHHHHHhhcCCCCCccccCCCccchHHHhHHHHHHHHhc-CChh-hHH
Q 005044 76 DRAAAKRATHVLAELAK-NEEVV-NWIVEGGAVPALVKHLQAPPTSEADRNLKPFEHEVEKGSAFALGLLA-VKPE-HQQ 151 (717)
Q Consensus 76 ~~~~~~~a~~~L~~l~~-~~~~~-~~~~~~g~i~~L~~lL~~~~~~~~~~~~~~~~~~v~~~a~~~L~~l~-~~~~-~~~ 151 (717)
+..++..++.+|..+.. -...- ........++.|...+.+.+. .+|..++.+|..++ ..++ ...
T Consensus 194 ~~~vr~~al~~l~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~------------~~r~~a~~~l~~l~~~~~~~~~~ 261 (861)
T 2bpt_A 194 SKAVRLAALNALADSLIFIKNNMEREGERNYLMQVVCEATQAEDI------------EVQAAAFGCLCKIMSKYYTFMKP 261 (861)
T ss_dssp CHHHHHHHHHHHHHHGGGCHHHHTSHHHHHHHHHHHHHHHTCSCH------------HHHHHHHHHHHHHHHHHGGGCHH
T ss_pred CHHHHHHHHHHHHHHHHHHHHHccChhHHHHHHHHHHHHhcCCCH------------HHHHHHHHHHHHHHHHHHHHHHH
Confidence 45578999999988654 11110 000011245666666655544 99999999999998 3332 222
Q ss_pred HHHhCCChHHHHHHHhccccCCCccchhHHHHHHHHHHHHHhhcCchh--------------hhHH--HhcCCcHHHHHh
Q 005044 152 LIVDNGALSHLVNLLKRHMDSNCSRAVNSVIRRAADAITNLAHENSSI--------------KTRV--RMEGGIPPLVEL 215 (717)
Q Consensus 152 ~~~~~~~i~~L~~lL~~~~~~~~~~~~~~~~~~a~~~L~~l~~~~~~~--------------~~~~--~~~~~i~~L~~l 215 (717)
.+ ....++.+...+.+.+. .++..++..+..++...... ...+ .-...+|.++..
T Consensus 262 ~l-~~~l~~~~~~~~~~~~~--------~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~ll~~ 332 (861)
T 2bpt_A 262 YM-EQALYALTIATMKSPND--------KVASMTVEFWSTICEEEIDIAYELAQFPQSPLQSYNFALSSIKDVVPNLLNL 332 (861)
T ss_dssp HH-HHTHHHHHHHHTTCSSH--------HHHHHHHHHHHHHHHHHHHHHHHHHHCTTCSCCCCCHHHHHHHHHHHHHHHH
T ss_pred HH-HHHHHHHHHHHHcCCcH--------HHHHHHHHHHHHHHHHHHhhhhhhhhccCCchhhHHHHHHHHHHHHHHHHHH
Confidence 21 11445555556655433 89999999998888642110 0000 113456777777
Q ss_pred hcC-------CCHHHHHHHHHHHHHhhccChhhHHHHHhcCCHHHHHHHHcCCCHHHHHHHHHHHHHhhcCCh-HHHHHH
Q 005044 216 LEF-------TDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSEDSAIHYEAVGVIGNLVHSSP-NIKKEV 287 (717)
Q Consensus 216 l~~-------~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~-~~~~~~ 287 (717)
+.. +++.++..+..+|..++....+. +. ..+++.+...+.+.+..++..++.+++.++.+.. ......
T Consensus 333 l~~~~~d~~d~~~~~r~~a~~~L~~l~~~~~~~---~~-~~l~~~l~~~l~~~~~~~r~~a~~~l~~i~~~~~~~~~~~~ 408 (861)
T 2bpt_A 333 LTRQNEDPEDDDWNVSMSAGACLQLFAQNCGNH---IL-EPVLEFVEQNITADNWRNREAAVMAFGSIMDGPDKVQRTYY 408 (861)
T ss_dssp TTCCCCC-CCCCCHHHHHHHHHHHHHHHHHGGG---GH-HHHHHHHHHHTTCSSHHHHHHHHHHHHHTSSSSCHHHHHHH
T ss_pred HHhcccccccccCcHHHHHHHHHHHHHHHccHh---HH-HHHHHHHHHHcCCCChhHHHHHHHHHHHHHcCCCHHHHHHH
Confidence 764 23689999999999998632211 11 1246667777788899999999999999986642 222222
Q ss_pred HHcCChHHHHHhhccCChHHHHHHHHHHHHHhcCChhhH-HHHHhcCChHHHHHHhcCCCHHHHHHHHHHHHHhhcCCCC
Q 005044 288 LAAGALQPVIGLLSSCCSESQREAALLLGQFAATDSDCK-VHIVQRGAVRPLIEMLQSPDVQLREMSAFALGRLAQDMHN 366 (717)
Q Consensus 288 ~~~g~l~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~-~~l~~~~~l~~L~~~l~~~~~~v~~~a~~~L~~l~~~~~~ 366 (717)
. ..+++.++..+.++++.+|..+++++++++....... ..-.-..+++.++..+.++ +.++..++++|.+++.....
T Consensus 409 l-~~il~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~l~~l~~~l~~~-~~v~~~a~~al~~l~~~~~~ 486 (861)
T 2bpt_A 409 V-HQALPSILNLMNDQSLQVKETTAWCIGRIADSVAESIDPQQHLPGVVQACLIGLQDH-PKVATNCSWTIINLVEQLAE 486 (861)
T ss_dssp H-HHHHHHHHHGGGCSCHHHHHHHHHHHHHHHHHHGGGSCTTTTHHHHHHHHHHHHTSC-HHHHHHHHHHHHHHHHHHSS
T ss_pred H-HHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHhhhhcCCHHHHHHHHHHHHHHhccC-hHHHHHHHHHHHHHHHhccc
Confidence 2 2478889999999999999999999999974321100 0001123577888888775 89999999999999864220
Q ss_pred --chhh--HhcCChHHHHHhhcCC--ChhHHHHHHHHHHhccCCC-cchHHHHHhcCccccccchhH-------------
Q 005044 367 --QAGI--AHNGGLVPLLKLLDSK--NGSLQHNAAFALYGLADNE-DNVADFIRVGGVQKLQDGEFI------------- 426 (717)
Q Consensus 367 --~~~l--~~~~~l~~L~~ll~~~--~~~v~~~a~~~L~~l~~~~-~~~~~l~~~~~i~~L~~~~~~------------- 426 (717)
...+ .-...++.|++.+.+. ++.++..++.++..++... .....+.. ..++.+.+....
T Consensus 487 ~~~~~l~~~~~~il~~L~~~l~~~d~~~~vr~~a~~al~~l~~~~~~~~~~~~~-~l~~~l~~~l~~~~~~~~~i~~~~~ 565 (861)
T 2bpt_A 487 ATPSPIYNFYPALVDGLIGAANRIDNEFNARASAFSALTTMVEYATDTVAETSA-SISTFVMDKLGQTMSVDENQLTLED 565 (861)
T ss_dssp SSSCGGGGGHHHHHHHHHHHHTCSCCGGGHHHHHHHHHHHHHHHCCGGGHHHHH-HHHHHHHHHHHHHTTSCGGGCCHHH
T ss_pred ccchhhHHHHHHHHHHHHHHHhCcCcchHHHHHHHHHHHHHHHHcchhhHHHHH-HHHHHHHHHHHHHHhhhcccCChhh
Confidence 1111 1123466677777643 3789999999999986532 22222111 112222211110
Q ss_pred ---HhhhHHHHHHHHHHHHHHh-------hhchHHHHHHHHhhcch-hHHHHHHHHHHhccCCCCCceeeecCCCHHHHH
Q 005044 427 ---VQATKDCVAKTLKRLEEKI-------HGRVLNHLLYLMRVAEK-GVQRRVALALAHLCSPDDQRTIFIDGGGLELLL 495 (717)
Q Consensus 427 ---~~~~~~~~~~~~~~l~~~~-------~~~~~~~L~~ll~~~~~-~v~~~a~~aL~~l~~~~~~~~~~~~~~~l~~L~ 495 (717)
....+..+..++..+.... ...+++.++..+.+.+. .++..++.+++.++..........-...+|.|.
T Consensus 566 ~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~v~~~~~~~l~~l~~~~~~~~~~~l~~i~~~l~ 645 (861)
T 2bpt_A 566 AQSLQELQSNILTVLAAVIRKSPSSVEPVADMLMGLFFRLLEKKDSAFIEDDVFYAISALAASLGKGFEKYLETFSPYLL 645 (861)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHCGGGTGGGHHHHHHHHHHHHHSTTGGGTHHHHHHHHHHHHHHHGGGGHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHccCCCCcHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence 1111122222333332221 23577788888888877 899999999999865432111111234678888
Q ss_pred HHhcCCCchhhhhhHHHHHHhhhc
Q 005044 496 GLLGSTNPKQQLDGAVALFKLANK 519 (717)
Q Consensus 496 ~ll~~~~~~v~~~a~~~l~~L~~~ 519 (717)
..+.++++.++..++.++..++..
T Consensus 646 ~~l~~~~~~vr~~a~~~l~~l~~~ 669 (861)
T 2bpt_A 646 KALNQVDSPVSITAVGFIADISNS 669 (861)
T ss_dssp HHHHCTTSHHHHHHHHHHHHHHHH
T ss_pred HHhccccHHHHHHHHHHHHHHHHH
Confidence 888888899999999999988875
No 72
>2bpt_A Importin beta-1 subunit; nuclear transport, nucleocytoplasmic transport, nuclear trafficking, importin- beta, complex; 1.99A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 2bku_B 3ea5_B* 3nd2_A
Probab=99.46 E-value=6.4e-13 Score=154.37 Aligned_cols=429 Identities=11% Similarity=0.088 Sum_probs=261.0
Q ss_pred HHHHhhhhhccccchHHHHHHHHHHHHHHHHhhcCh--hhHHHHHhCCChHHHHHhhcCCCCCccccCCCccchHHHhHH
Q 005044 59 VSAQVNVLNTTFSWLEADRAAAKRATHVLAELAKNE--EVVNWIVEGGAVPALVKHLQAPPTSEADRNLKPFEHEVEKGS 136 (717)
Q Consensus 59 i~~l~~~L~~~~~~~~~~~~~~~~a~~~L~~l~~~~--~~~~~~~~~g~i~~L~~lL~~~~~~~~~~~~~~~~~~v~~~a 136 (717)
++.+++.+...+.+. +...+..|+.+|+.++.+. +...... ...++.|+..+.+.+. .+|..+
T Consensus 367 ~~~l~~~l~~~l~~~--~~~~r~~a~~~l~~i~~~~~~~~~~~~l-~~il~~l~~~l~d~~~------------~vr~~a 431 (861)
T 2bpt_A 367 LEPVLEFVEQNITAD--NWRNREAAVMAFGSIMDGPDKVQRTYYV-HQALPSILNLMNDQSL------------QVKETT 431 (861)
T ss_dssp HHHHHHHHHHHTTCS--SHHHHHHHHHHHHHTSSSSCHHHHHHHH-HHHHHHHHHGGGCSCH------------HHHHHH
T ss_pred HHHHHHHHHHHcCCC--ChhHHHHHHHHHHHHHcCCCHHHHHHHH-HHHHHHHHHHcCCCcH------------HHHHHH
Confidence 344555555544433 3446899999999998742 2222222 2467888888877654 999999
Q ss_pred HHHHHHhcCC--hhhHHHHHhCCChHHHHHHHhccccCCCccchhHHHHHHHHHHHHHhhcCc-----hhhhHHHhcCCc
Q 005044 137 AFALGLLAVK--PEHQQLIVDNGALSHLVNLLKRHMDSNCSRAVNSVIRRAADAITNLAHENS-----SIKTRVRMEGGI 209 (717)
Q Consensus 137 ~~~L~~l~~~--~~~~~~~~~~~~i~~L~~lL~~~~~~~~~~~~~~~~~~a~~~L~~l~~~~~-----~~~~~~~~~~~i 209 (717)
+++++.++.. +.....-.-...++.++..+.+. . .++..++++|.+++.... .....+ ...+
T Consensus 432 ~~~l~~l~~~~~~~~~~~~~~~~~l~~l~~~l~~~-~--------~v~~~a~~al~~l~~~~~~~~~~~l~~~~--~~il 500 (861)
T 2bpt_A 432 AWCIGRIADSVAESIDPQQHLPGVVQACLIGLQDH-P--------KVATNCSWTIINLVEQLAEATPSPIYNFY--PALV 500 (861)
T ss_dssp HHHHHHHHHHHGGGSCTTTTHHHHHHHHHHHHTSC-H--------HHHHHHHHHHHHHHHHHSSSSSCGGGGGH--HHHH
T ss_pred HHHHHHHHHHhhhhcCCHHHHHHHHHHHHHHhccC-h--------HHHHHHHHHHHHHHHhcccccchhhHHHH--HHHH
Confidence 9999999821 11000000113466677777553 2 899999999999987421 121111 2356
Q ss_pred HHHHHhhcCCC--HHHHHHHHHHHHHhhccChhhHHHHHhcCCHHHHHHHHcC---------------CCHHHHHHHHHH
Q 005044 210 PPLVELLEFTD--TKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRS---------------EDSAIHYEAVGV 272 (717)
Q Consensus 210 ~~L~~ll~~~~--~~v~~~a~~~L~~L~~~~~~~~~~~~~~g~i~~L~~ll~~---------------~~~~v~~~a~~~ 272 (717)
+.|+..+.+.+ +.++..++.++..++...+........ .+++.++..+.. ....++..++.+
T Consensus 501 ~~L~~~l~~~d~~~~vr~~a~~al~~l~~~~~~~~~~~~~-~l~~~l~~~l~~~~~~~~~i~~~~~~~~~~~~~~~~~~~ 579 (861)
T 2bpt_A 501 DGLIGAANRIDNEFNARASAFSALTTMVEYATDTVAETSA-SISTFVMDKLGQTMSVDENQLTLEDAQSLQELQSNILTV 579 (861)
T ss_dssp HHHHHHHTCSCCGGGHHHHHHHHHHHHHHHCCGGGHHHHH-HHHHHHHHHHHHHTTSCGGGCCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhCcCcchHHHHHHHHHHHHHHHHcchhhHHHHH-HHHHHHHHHHHHHHhhhcccCChhhHHHHHHHHHHHHHH
Confidence 77788887533 789999999999998754443332222 356666666642 134678889999
Q ss_pred HHHhhcCChHHHHHHHHcCChHHHHHhhccCCh-HHHHHHHHHHHHHhcCChhhHHHHHhcCChHHHHHHhcCCCHHHHH
Q 005044 273 IGNLVHSSPNIKKEVLAAGALQPVIGLLSSCCS-ESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQSPDVQLRE 351 (717)
Q Consensus 273 L~~l~~~~~~~~~~~~~~g~l~~L~~ll~~~~~-~~~~~a~~~L~~l~~~~~~~~~~l~~~~~l~~L~~~l~~~~~~v~~ 351 (717)
|.+++......... .-..+++.+...+.+.+. .++..+..+++.++........... ..+++.+...+.++++.++.
T Consensus 580 l~~l~~~~~~~~~~-~~~~l~~~l~~~l~~~~~~~v~~~~~~~l~~l~~~~~~~~~~~l-~~i~~~l~~~l~~~~~~vr~ 657 (861)
T 2bpt_A 580 LAAVIRKSPSSVEP-VADMLMGLFFRLLEKKDSAFIEDDVFYAISALAASLGKGFEKYL-ETFSPYLLKALNQVDSPVSI 657 (861)
T ss_dssp HHHHHHHCGGGTGG-GHHHHHHHHHHHHHSTTGGGTHHHHHHHHHHHHHHHGGGGHHHH-HHHHHHHHHHHHCTTSHHHH
T ss_pred HHHHHHHhhhhhHH-HHHHHHHHHHHHHccCCCCcHHHHHHHHHHHHHHHHhhhHHHHH-HHHHHHHHHHhccccHHHHH
Confidence 99887543321111 112456777888887766 8899999999988743222211122 33788899999888889999
Q ss_pred HHHHHHHHhhcCCCCchhhHhcCChHHHHHhhcCCC--hhHHHHHHHHHHhccCC-CcchHHHHHhcCccccccchh---
Q 005044 352 MSAFALGRLAQDMHNQAGIAHNGGLVPLLKLLDSKN--GSLQHNAAFALYGLADN-EDNVADFIRVGGVQKLQDGEF--- 425 (717)
Q Consensus 352 ~a~~~L~~l~~~~~~~~~l~~~~~l~~L~~ll~~~~--~~v~~~a~~~L~~l~~~-~~~~~~l~~~~~i~~L~~~~~--- 425 (717)
.++.++..++......-.-.-...++.+++.+.+.+ ..++..++.++..++.. .+....+.. ..++.+.....
T Consensus 658 ~a~~~l~~l~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~vr~~~~~~l~~l~~~~~~~~~~~l~-~~l~~l~~~~~~~~ 736 (861)
T 2bpt_A 658 TAVGFIADISNSLEEDFRRYSDAMMNVLAQMISNPNARRELKPAVLSVFGDIASNIGADFIPYLN-DIMALCVAAQNTKP 736 (861)
T ss_dssp HHHHHHHHHHHHTGGGGHHHHHHHHHHHHHHHHCTTCCTTHHHHHHHHHHHHHHHHGGGGHHHHH-HHHHHHHHHHTCCC
T ss_pred HHHHHHHHHHHHhchhccchHHHHHHHHHHHhCCccccHhhhHHHHHHHHHHHHHhhhhHHHHHH-HHHHHHHHHHhcCC
Confidence 999999999874332211122345666777777654 88999999999988753 112111111 12222222110
Q ss_pred ---------HHhhhHHHHHHHHHHHHHHh----------hhchHHHHHHHHhhc----chhHHHHHHHHHHhccC---CC
Q 005044 426 ---------IVQATKDCVAKTLKRLEEKI----------HGRVLNHLLYLMRVA----EKGVQRRVALALAHLCS---PD 479 (717)
Q Consensus 426 ---------~~~~~~~~~~~~~~~l~~~~----------~~~~~~~L~~ll~~~----~~~v~~~a~~aL~~l~~---~~ 479 (717)
.....+......+..+.... -..+++.|...+.+. +..+|..|+.+|+.++. ++
T Consensus 737 ~~~d~d~~~~~~~vr~~~l~~~~~i~~~l~~~~~~~~~~~~~i~~~l~~~~~d~~~~~~~~vr~~a~~~l~~l~~~~~g~ 816 (861)
T 2bpt_A 737 ENGTLEALDYQIKVLEAVLDAYVGIVAGLHDKPEALFPYVGTIFQFIAQVAEDPQLYSEDATSRAAVGLIGDIAAMFPDG 816 (861)
T ss_dssp SSSSHHHHHHHHHHHHHHHHHHHHHHHHTTTCHHHHGGGHHHHHHHHHHHHHCHHHHTSHHHHHHHHHHHHHHHHHCTTS
T ss_pred CCCChHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHHHcCcccCCcHHHHHHHHHHHHHHHHHcCCc
Confidence 01112222222222222111 123444555555553 78899999999999964 33
Q ss_pred CCceeeecCCCHHHHHHHhc---CCCchhhhhhHHHHHHhhh
Q 005044 480 DQRTIFIDGGGLELLLGLLG---STNPKQQLDGAVALFKLAN 518 (717)
Q Consensus 480 ~~~~~~~~~~~l~~L~~ll~---~~~~~v~~~a~~~l~~L~~ 518 (717)
+... ......++.|++.+. +.+..++..|.|++..+.+
T Consensus 817 ~~~~-~~~~~~~~~ll~~l~~~~~~~~~~~~~~~wa~~~~~~ 857 (861)
T 2bpt_A 817 SIKQ-FYGQDWVIDYIKRTRSGQLFSQATKDTARWAREQQKR 857 (861)
T ss_dssp TTGG-GTTCHHHHHHHHHHHHCSSSCHHHHHHHHHHHHHHHH
T ss_pred hHHH-HHhcHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHH
Confidence 3222 223356888887776 4666789999999988764
No 73
>1qgr_A Protein (importin beta subunit); transport receptor, nuclear import, heat motif, NLS-binding; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qgk_A 2p8q_A 2q5d_A 3lww_A 1ukl_A 2qna_A
Probab=99.43 E-value=8.8e-12 Score=145.09 Aligned_cols=385 Identities=12% Similarity=0.064 Sum_probs=252.1
Q ss_pred HHHHHHHHHHHHHHhhc-ChhhHH-----HHH------hCCChHHHHHhhcCCCCCccccCCCccchHHHhHHHHHHHHh
Q 005044 76 DRAAAKRATHVLAELAK-NEEVVN-----WIV------EGGAVPALVKHLQAPPTSEADRNLKPFEHEVEKGSAFALGLL 143 (717)
Q Consensus 76 ~~~~~~~a~~~L~~l~~-~~~~~~-----~~~------~~g~i~~L~~lL~~~~~~~~~~~~~~~~~~v~~~a~~~L~~l 143 (717)
+..+|..|+..|.+... ..+.+. ... ...+.+.|++.|.+.+. .+ ..++.+++.+
T Consensus 50 ~~~vR~~a~~~Lk~~i~~~~~~~~~~~~~~w~~l~~~~~~~ik~~ll~~l~~~~~------------~~-~~~~~~l~~i 116 (876)
T 1qgr_A 50 SQVARVAAGLQIKNSLTSKDPDIKAQYQQRWLAIDANARREVKNYVLHTLGTETY------------RP-SSASQCVAGI 116 (876)
T ss_dssp CHHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHTSCHHHHHHHHHHHHHHTTTCCS------------SS-CHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHhccccchHhHHHHHhhhccCCHHHHHHHHHHHHHHhCCCcH------------HH-HHHHHHHHHH
Confidence 45578888888888654 211100 000 01122347777776555 56 7888999888
Q ss_pred cCChhhHHHHHhCCChHHHHHHHhcc--ccCCCccchhHHHHHHHHHHHHHhhcCchhhhHHHhcCCcHHHHHhhcCC--
Q 005044 144 AVKPEHQQLIVDNGALSHLVNLLKRH--MDSNCSRAVNSVIRRAADAITNLAHENSSIKTRVRMEGGIPPLVELLEFT-- 219 (717)
Q Consensus 144 ~~~~~~~~~~~~~~~i~~L~~lL~~~--~~~~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~-- 219 (717)
+....... .-...++.+...+.+. +. .++..++.+|..++.......-.-.....++.+...+.++
T Consensus 117 ~~~~~~~~--~w~~ll~~l~~~l~~~~~~~--------~~r~~al~~l~~l~~~~~~~~~~~~~~~ll~~l~~~l~~~~~ 186 (876)
T 1qgr_A 117 ACAEIPVN--QWPELIPQLVANVTNPNSTE--------HMKESTLEAIGYICQDIDPEQLQDKSNEILTAIIQGMRKEEP 186 (876)
T ss_dssp HHHHGGGT--CCTTHHHHHHHHHHCTTCCH--------HHHHHHHHHHHHHHHHSCHHHHGGGHHHHHHHHHHHHSTTCS
T ss_pred HHhhCccc--ccHHHHHHHHHHHhCCCCCH--------HHHHHHHHHHHHHHHhcCHhhHHhHHHHHHHHHHHhhcCCCC
Confidence 82210000 0134677888888765 33 7899999999999874321100001123456677777776
Q ss_pred CHHHHHHHHHHHHHhhccChhhHH-HHHhcCCHHHHHHHHcCCCHHHHHHHHHHHHHhhcCChHHHHHHHHcCChHHHHH
Q 005044 220 DTKVQRAAAGALRTLAFKNDENKN-QIVECNALPTLILMLRSEDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIG 298 (717)
Q Consensus 220 ~~~v~~~a~~~L~~L~~~~~~~~~-~~~~~g~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~l~~L~~ 298 (717)
++.+|..++.++..++..-..+.. ......+++.+...+.+++.+++..++.+|..++...+......+...+++.+..
T Consensus 187 ~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~il~~l~~~~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~l~~~~~~ 266 (876)
T 1qgr_A 187 SNNVKLAATNALLNSLEFTKANFDKESERHFIMQVVCEATQCPDTRVRVAALQNLVKIMSLYYQYMETYMGPALFAITIE 266 (876)
T ss_dssp CHHHHHHHHHHHHHHGGGCHHHHTSHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHSGGGCHHHHTTTHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Confidence 689999999999998753222110 1111125777788888889999999999999998655443233333467888888
Q ss_pred hhccCChHHHHHHHHHHHHHhcCChh---------------------hHHHHHhcCChHHHHHHhcC-------CCHHHH
Q 005044 299 LLSSCCSESQREAALLLGQFAATDSD---------------------CKVHIVQRGAVRPLIEMLQS-------PDVQLR 350 (717)
Q Consensus 299 ll~~~~~~~~~~a~~~L~~l~~~~~~---------------------~~~~l~~~~~l~~L~~~l~~-------~~~~v~ 350 (717)
.+.+.++.++..++..+.+++..... ..... -..+++.++..+.. .+..+|
T Consensus 267 ~~~~~~~~v~~~al~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~ll~~ll~~l~~~~~d~~~~~~~~r 345 (876)
T 1qgr_A 267 AMKSDIDEVALQGIEFWSNVCDEEMDLAIEASEAAEQGRPPEHTSKFYAKGA-LQYLVPILTQTLTKQDENDDDDDWNPC 345 (876)
T ss_dssp HHTCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCCSSCCCCHHHHH-HHHHHHHHHHHTTCCCSSCCTTCCCHH
T ss_pred HhcCCchHHHHHHHHHHHHHHHHHHhHhhhhccccccCCCccchhHHHHHHH-HHHHhHHHHHHhhcccccccccccHHH
Confidence 88888899999999988888643110 00001 13356777787752 346789
Q ss_pred HHHHHHHHHhhcCCCCchhhHhcCChHHHHHhhcCCChhHHHHHHHHHHhccCCCcchHHHHHhcCccccccchhHHhhh
Q 005044 351 EMSAFALGRLAQDMHNQAGIAHNGGLVPLLKLLDSKNGSLQHNAAFALYGLADNEDNVADFIRVGGVQKLQDGEFIVQAT 430 (717)
Q Consensus 351 ~~a~~~L~~l~~~~~~~~~l~~~~~l~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~l~~~~~i~~L~~~~~~~~~~ 430 (717)
..+..+|..++.... ..+ -...++.+.+.+.+.++.++..+++++..++...... .+..
T Consensus 346 ~~a~~~l~~l~~~~~--~~~-~~~~l~~l~~~l~~~~~~~r~~a~~~l~~i~~~~~~~-~~~~----------------- 404 (876)
T 1qgr_A 346 KAAGVCLMLLATCCE--DDI-VPHVLPFIKEHIKNPDWRYRDAAVMAFGCILEGPEPS-QLKP----------------- 404 (876)
T ss_dssp HHHHHHHHHHHHHHG--GGG-HHHHHHHHHHHTTCSSHHHHHHHHHHHHHTSSSSCHH-HHHH-----------------
T ss_pred HHHHHHHHHHHHHCc--Hhh-HHHHHHHHHHHccCCChHHHHHHHHHHHHHHcCCCHH-HHHH-----------------
Confidence 999999999886432 122 1234556667778899999999999999998654210 0000
Q ss_pred HHHHHHHHHHHHHHhhhchHHHHHHHHhhcchhHHHHHHHHHHhccCCCCCc--eeeecCCCHHHHHHHhcCCCchhhhh
Q 005044 431 KDCVAKTLKRLEEKIHGRVLNHLLYLMRVAEKGVQRRVALALAHLCSPDDQR--TIFIDGGGLELLLGLLGSTNPKQQLD 508 (717)
Q Consensus 431 ~~~~~~~~~~l~~~~~~~~~~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~--~~~~~~~~l~~L~~ll~~~~~~v~~~ 508 (717)
....+++.++..+.++++.+|..|+++|++++...... ..-.-...++.|...+.++ +.++..
T Consensus 405 --------------~~~~~l~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~~l~~~l~~l~~~l~~~-~~v~~~ 469 (876)
T 1qgr_A 405 --------------LVIQAMPTLIELMKDPSVVVRDTAAWTVGRICELLPEAAINDVYLAPLLQCLIEGLSAE-PRVASN 469 (876)
T ss_dssp --------------HHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHCGGGTSSTTTHHHHHHHHHHHTTSC-HHHHHH
T ss_pred --------------HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhCchhcccHHHHHHHHHHHHHHHcCC-HHHHHH
Confidence 11237888999999999999999999999997542211 0011235677888888775 889999
Q ss_pred hHHHHHHhhhcc
Q 005044 509 GAVALFKLANKA 520 (717)
Q Consensus 509 a~~~l~~L~~~~ 520 (717)
|++++.+++...
T Consensus 470 a~~al~~l~~~~ 481 (876)
T 1qgr_A 470 VCWAFSSLAEAA 481 (876)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHh
Confidence 999999998753
No 74
>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic}
Probab=99.41 E-value=5e-12 Score=119.38 Aligned_cols=188 Identities=23% Similarity=0.250 Sum_probs=158.8
Q ss_pred cCCHHHHHHHHcCCCHHHHHHHHHHHHHhhcCChHHHHHHHHcCChHHHHHhhccCChHHHHHHHHHHHHHhcCChhhHH
Q 005044 248 CNALPTLILMLRSEDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLSSCCSESQREAALLLGQFAATDSDCKV 327 (717)
Q Consensus 248 ~g~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~l~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~ 327 (717)
.+.++.|+.+|+++++.++..|+..|+.+.. .+.++.|+.++.++++.++..++.+|+.+..
T Consensus 18 ~~~~~~L~~~L~~~~~~vR~~A~~~L~~~~~-----------~~~~~~L~~~l~~~~~~vr~~a~~aL~~~~~------- 79 (211)
T 3ltm_A 18 PEKVEMYIKNLQDDSYYVRRAAAYALGKIGD-----------ERAVEPLIKALKDEDAWVRRAAADALGQIGD------- 79 (211)
T ss_dssp GGGHHHHHHHTTCSSHHHHHHHHHHHHHHCC-----------GGGHHHHHHHTTCSCHHHHHHHHHHHHHHCC-------
T ss_pred HhHHHHHHHHHcCCCHHHHHHHHHHHHHhCC-----------ccHHHHHHHHHcCCCHHHHHHHHHHHHhhCC-------
Confidence 4568999999999999999999999998742 2468899999999999999999999999842
Q ss_pred HHHhcCChHHHHHHhcCCCHHHHHHHHHHHHHhhcCCCCchhhHhcCChHHHHHhhcCCChhHHHHHHHHHHhccCCCcc
Q 005044 328 HIVQRGAVRPLIEMLQSPDVQLREMSAFALGRLAQDMHNQAGIAHNGGLVPLLKLLDSKNGSLQHNAAFALYGLADNEDN 407 (717)
Q Consensus 328 ~l~~~~~l~~L~~~l~~~~~~v~~~a~~~L~~l~~~~~~~~~l~~~~~l~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~ 407 (717)
.+.++.|+.++.++++.+|..++++|+.+.. ...++.|++++.++++.++..++.+|.++...
T Consensus 80 ----~~~~~~L~~~l~~~~~~vr~~a~~aL~~~~~----------~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~~--- 142 (211)
T 3ltm_A 80 ----ERAVEPLIKALKDEDGWVRQSAAVALGQIGD----------ERAVEPLIKALKDEDWFVRIAAAFALGEIGDE--- 142 (211)
T ss_dssp ----GGGHHHHHHHTTCSSHHHHHHHHHHHHHHCC----------GGGHHHHHHHTTCSSHHHHHHHHHHHHHHCCG---
T ss_pred ----HHHHHHHHHHHcCCCHHHHHHHHHHHHHhCc----------HHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCH---
Confidence 3467889999999999999999999999853 24678899999999999999999999988521
Q ss_pred hHHHHHhcCccccccchhHHhhhHHHHHHHHHHHHHHhhhchHHHHHHHHhhcchhHHHHHHHHHHhccCCCCCceeeec
Q 005044 408 VADFIRVGGVQKLQDGEFIVQATKDCVAKTLKRLEEKIHGRVLNHLLYLMRVAEKGVQRRVALALAHLCSPDDQRTIFID 487 (717)
Q Consensus 408 ~~~l~~~~~i~~L~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~~~ 487 (717)
..++.|..++.++++.+|..++.+|+.+..
T Consensus 143 ----------------------------------------~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~---------- 172 (211)
T 3ltm_A 143 ----------------------------------------RAVEPLIKALKDEDGWVRQSAADALGEIGG---------- 172 (211)
T ss_dssp ----------------------------------------GGHHHHHHHTTCSSHHHHHHHHHHHHHHCS----------
T ss_pred ----------------------------------------HHHHHHHHHHcCCCHHHHHHHHHHHHHhCc----------
Confidence 156778899999999999999999999842
Q ss_pred CCCHHHHHHHhcCCCchhhhhhHHHHHHhhhcc
Q 005044 488 GGGLELLLGLLGSTNPKQQLDGAVALFKLANKA 520 (717)
Q Consensus 488 ~~~l~~L~~ll~~~~~~v~~~a~~~l~~L~~~~ 520 (717)
..+++.|..+++++++.+|..|..+|.++..+.
T Consensus 173 ~~~~~~L~~~l~d~~~~vr~~A~~aL~~~~~~~ 205 (211)
T 3ltm_A 173 ERVRAAMEKLAETGTGFARKVAVNYLETHKSFN 205 (211)
T ss_dssp HHHHHHHHHHHHHCCHHHHHHHHHHHHC-----
T ss_pred hhHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCC
Confidence 457899999999999999999999999998764
No 75
>1ibr_B P95, importin beta-1 subunit, nuclear factor; small GTPase, nuclear transport receptor, cell cycle, translation; HET: GNP; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1m5n_S 1gcj_A 1f59_A 1o6o_A 1o6p_A
Probab=99.41 E-value=4.8e-12 Score=135.58 Aligned_cols=342 Identities=11% Similarity=0.073 Sum_probs=227.7
Q ss_pred HHHHHHHHHHHHHHhhcCh--hhHHH----H------HhCCChHHHHHhhcCCCCCccccCCCccchHHHhHHHHHHHHh
Q 005044 76 DRAAAKRATHVLAELAKNE--EVVNW----I------VEGGAVPALVKHLQAPPTSEADRNLKPFEHEVEKGSAFALGLL 143 (717)
Q Consensus 76 ~~~~~~~a~~~L~~l~~~~--~~~~~----~------~~~g~i~~L~~lL~~~~~~~~~~~~~~~~~~v~~~a~~~L~~l 143 (717)
+..+|..|+..|.++.... ..... . ....+-..|+..|.+.+. .+ ..++.+++.+
T Consensus 50 ~~~vR~~a~~~Lk~~i~~~~~~~~~~~~~~~~~l~~~~~~~ik~~ll~~l~~~~~------------~v-~~~~~~i~~i 116 (462)
T 1ibr_B 50 SQVARVAAGLQIKNSLTSKDPDIKAQYQQRWLAIDANARREVKNYVLQTLGTETY------------RP-SSASQCVAGI 116 (462)
T ss_dssp CHHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHTSCHHHHHHHHHHHHHHTTCCCS------------SS-CSHHHHHHHH
T ss_pred ChHHHHHHHHHHHHhccccchHHHHHHHhhhhcCCHHHHHHHHHHHHHHhCCCCc------------hh-hHHHHHHHHH
Confidence 4457888999999886521 00000 0 011233567777877655 67 8899999999
Q ss_pred c--CChhhHHHHHhCCChHHHHHHHhcc--ccCCCccchhHHHHHHHHHHHHHhhcC-chhhhHHHhcCCcHHHHHhhcC
Q 005044 144 A--VKPEHQQLIVDNGALSHLVNLLKRH--MDSNCSRAVNSVIRRAADAITNLAHEN-SSIKTRVRMEGGIPPLVELLEF 218 (717)
Q Consensus 144 ~--~~~~~~~~~~~~~~i~~L~~lL~~~--~~~~~~~~~~~~~~~a~~~L~~l~~~~-~~~~~~~~~~~~i~~L~~ll~~ 218 (717)
+ +.++. .-.+.++.|+..+.+. +. .++..++.+|..++... +..-... ....++.+...+.+
T Consensus 117 a~~~~~~~----~w~~ll~~L~~~l~~~~~~~--------~~r~~al~~l~~l~~~~~~~~~~~~-~~~ll~~l~~~l~~ 183 (462)
T 1ibr_B 117 ACAEIPVN----QWPELIPQLVANVTNPNSTE--------HMKESTLEAIGYICQDIDPEQLQDK-SNEILTAIIQGMRK 183 (462)
T ss_dssp HHHHGGGT----CCTTHHHHHHHHHHCTTCCH--------HHHHHHHHHHHHHHHHSCGGGTGGG-HHHHHHHHHHHHST
T ss_pred HHHhcccc----ccHHHHHHHHHHhccCCCCH--------HHHHHHHHHHHHHHHhCCchhhHhH-HHHHHHHHHHHhCC
Confidence 8 22321 1246788888888775 33 78999999999999754 2211111 12356788888888
Q ss_pred C--CHHHHHHHHHHHHHhhccChhhHH-HHHhcCCHHHHHHHHcCCCHHHHHHHHHHHHHhhcCChHHHHHHHHcCChHH
Q 005044 219 T--DTKVQRAAAGALRTLAFKNDENKN-QIVECNALPTLILMLRSEDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQP 295 (717)
Q Consensus 219 ~--~~~v~~~a~~~L~~L~~~~~~~~~-~~~~~g~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~l~~ 295 (717)
+ ++.+|..|++++.++...-..... .....-+++.+...+.+++++++..++++|..++...+......+..++++.
T Consensus 184 ~~~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~vr~~~~~~l~~l~~~~~~~~~~~~~~~l~~~ 263 (462)
T 1ibr_B 184 EEPSNNVKLAATNALLNSLEFTKANFDKESERHFIMQVVCEATQCPDTRVRVAALQNLVKIMSLYYQYMETYMGPALFAI 263 (462)
T ss_dssp TCCCHHHHHHHHHHHHHHTTTTHHHHTSHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHCGGGCTTTTTTTHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 7 799999999999997642221110 0011114667777788889999999999999997654332111111156777
Q ss_pred HHHhhccCChHHHHHHHHHHHHHhcCChhh-----------------HHHHH---hcCChHHHHHHhcC-------CCHH
Q 005044 296 VIGLLSSCCSESQREAALLLGQFAATDSDC-----------------KVHIV---QRGAVRPLIEMLQS-------PDVQ 348 (717)
Q Consensus 296 L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~-----------------~~~l~---~~~~l~~L~~~l~~-------~~~~ 348 (717)
++..+.+.++.++..++..+..++...... ...+. -..++|.++..+.. .+..
T Consensus 264 ~~~~~~~~~~~v~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~p~l~~~l~~~d~d~~~~~~~ 343 (462)
T 1ibr_B 264 TIEAMKSDIDEVALQGIEFWSNVCDEEMDLAIEASEAAEQGRPPEHTSKFYAKGALQYLVPILTQTLTKQDENDDDDDWN 343 (462)
T ss_dssp HHHHHHCSSHHHHHHHHHHHHHHHHHHHHHHHHHCCTTCSSSCSSCCCCCHHHHHHHHHHHHHHHHTTCCCSSCCTTCCS
T ss_pred HHHHHcCCchHHHHHHHHHHHHHHHHHHHHHHhcccccccCCCccchhHHHHHHHhhhccHHHHHHHHhcccccccccch
Confidence 888888888999999999998887431000 00011 13356777777753 2357
Q ss_pred HHHHHHHHHHHhhcCCCCchhhHhcCChHHHHHhhcCCChhHHHHHHHHHHhccCCCcchHHHHHhcCccccccchhHHh
Q 005044 349 LREMSAFALGRLAQDMHNQAGIAHNGGLVPLLKLLDSKNGSLQHNAAFALYGLADNEDNVADFIRVGGVQKLQDGEFIVQ 428 (717)
Q Consensus 349 v~~~a~~~L~~l~~~~~~~~~l~~~~~l~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~l~~~~~i~~L~~~~~~~~ 428 (717)
+|..|+.+|..++...+. .+ -...++.+.+.+.+.++.++..++.+++.++.+... ..+..
T Consensus 344 ~r~~a~~~L~~l~~~~~~--~~-~~~~~~~l~~~l~~~~~~~r~aal~~l~~l~~~~~~-------~~~~~--------- 404 (462)
T 1ibr_B 344 PCKAAGVCLMLLATCCED--DI-VPHVLPFIKEHIKNPDWRYRDAAVMAFGCILEGPEP-------SQLKP--------- 404 (462)
T ss_dssp HHHHHHHHHHHHHHHTTT--TH-HHHHHHHHHHHTTCSSHHHHHHHHHHHHHTSSSSCT-------TTTCT---------
T ss_pred HHHHHHHHHHHHHHhccH--HH-HHHHHHHHHHHhcCCChHHHHHHHHHHHHHhcCCcH-------HHHHH---------
Confidence 899999999999874431 22 234566677888899999999999999999864321 00110
Q ss_pred hhHHHHHHHHHHHHHHhhhchHHHHHHHHhhcchhHHHHHHHHHHhccCC
Q 005044 429 ATKDCVAKTLKRLEEKIHGRVLNHLLYLMRVAEKGVQRRVALALAHLCSP 478 (717)
Q Consensus 429 ~~~~~~~~~~~~l~~~~~~~~~~~L~~ll~~~~~~v~~~a~~aL~~l~~~ 478 (717)
.-..+++.++..+.++++.+|..|+++|++++..
T Consensus 405 ----------------~l~~~~~~l~~~l~d~~~~Vr~~a~~~l~~~~~~ 438 (462)
T 1ibr_B 405 ----------------LVIQAMPTLIELMKDPSVVVRDTAAWTVGRICEL 438 (462)
T ss_dssp ----------------TTTTHHHHHHHGGGCSCHHHHHHHHHHHHHHHHH
T ss_pred ----------------HHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHh
Confidence 1123788999999999999999999999999754
No 76
>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic}
Probab=99.40 E-value=1.4e-11 Score=116.29 Aligned_cols=189 Identities=28% Similarity=0.312 Sum_probs=158.2
Q ss_pred cCCcHHHHHhhcCCCHHHHHHHHHHHHHhhccChhhHHHHHhcCCHHHHHHHHcCCCHHHHHHHHHHHHHhhcCChHHHH
Q 005044 206 EGGIPPLVELLEFTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSEDSAIHYEAVGVIGNLVHSSPNIKK 285 (717)
Q Consensus 206 ~~~i~~L~~ll~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~ 285 (717)
.+.++.|+..|+++++.+|..++.+|..+.. .+.++.|+.++.++++.++..++++|+.+..
T Consensus 18 ~~~~~~L~~~L~~~~~~vR~~A~~~L~~~~~-----------~~~~~~L~~~l~~~~~~vr~~a~~aL~~~~~------- 79 (211)
T 3ltm_A 18 PEKVEMYIKNLQDDSYYVRRAAAYALGKIGD-----------ERAVEPLIKALKDEDAWVRRAAADALGQIGD------- 79 (211)
T ss_dssp GGGHHHHHHHTTCSSHHHHHHHHHHHHHHCC-----------GGGHHHHHHHTTCSCHHHHHHHHHHHHHHCC-------
T ss_pred HhHHHHHHHHHcCCCHHHHHHHHHHHHHhCC-----------ccHHHHHHHHHcCCCHHHHHHHHHHHHhhCC-------
Confidence 3467899999999999999999999998863 2468999999999999999999999999842
Q ss_pred HHHHcCChHHHHHhhccCChHHHHHHHHHHHHHhcCChhhHHHHHhcCChHHHHHHhcCCCHHHHHHHHHHHHHhhcCCC
Q 005044 286 EVLAAGALQPVIGLLSSCCSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQSPDVQLREMSAFALGRLAQDMH 365 (717)
Q Consensus 286 ~~~~~g~l~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~l~~~~~l~~L~~~l~~~~~~v~~~a~~~L~~l~~~~~ 365 (717)
.+.++.|+.++.++++.++..++.+|+.+.. ...++.|+.++.++++.+|..++++|+++..
T Consensus 80 ----~~~~~~L~~~l~~~~~~vr~~a~~aL~~~~~-----------~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~--- 141 (211)
T 3ltm_A 80 ----ERAVEPLIKALKDEDGWVRQSAAVALGQIGD-----------ERAVEPLIKALKDEDWFVRIAAAFALGEIGD--- 141 (211)
T ss_dssp ----GGGHHHHHHHTTCSSHHHHHHHHHHHHHHCC-----------GGGHHHHHHHTTCSSHHHHHHHHHHHHHHCC---
T ss_pred ----HHHHHHHHHHHcCCCHHHHHHHHHHHHHhCc-----------HHHHHHHHHHHhCCCHHHHHHHHHHHHHcCC---
Confidence 2457889999999999999999999999842 2467899999999999999999999999843
Q ss_pred CchhhHhcCChHHHHHhhcCCChhHHHHHHHHHHhccCCCcchHHHHHhcCccccccchhHHhhhHHHHHHHHHHHHHHh
Q 005044 366 NQAGIAHNGGLVPLLKLLDSKNGSLQHNAAFALYGLADNEDNVADFIRVGGVQKLQDGEFIVQATKDCVAKTLKRLEEKI 445 (717)
Q Consensus 366 ~~~~l~~~~~l~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~l~~~~~i~~L~~~~~~~~~~~~~~~~~~~~l~~~~ 445 (717)
...++.|.+++.+.++.++..++.+|..+...
T Consensus 142 -------~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~~----------------------------------------- 173 (211)
T 3ltm_A 142 -------ERAVEPLIKALKDEDGWVRQSAADALGEIGGE----------------------------------------- 173 (211)
T ss_dssp -------GGGHHHHHHHTTCSSHHHHHHHHHHHHHHCSH-----------------------------------------
T ss_pred -------HHHHHHHHHHHcCCCHHHHHHHHHHHHHhCch-----------------------------------------
Confidence 24688899999999999999999999988521
Q ss_pred hhchHHHHHHHHhhcchhHHHHHHHHHHhccCCCC
Q 005044 446 HGRVLNHLLYLMRVAEKGVQRRVALALAHLCSPDD 480 (717)
Q Consensus 446 ~~~~~~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~ 480 (717)
..++.|..++.++++.+|..|..+|.++.....
T Consensus 174 --~~~~~L~~~l~d~~~~vr~~A~~aL~~~~~~~~ 206 (211)
T 3ltm_A 174 --RVRAAMEKLAETGTGFARKVAVNYLETHKSFNH 206 (211)
T ss_dssp --HHHHHHHHHHHHCCHHHHHHHHHHHHC------
T ss_pred --hHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCCC
Confidence 156778899999999999999999999976544
No 77
>1w63_A Adapter-related protein complex 1 gamma 1 subunit; endocytosis, clathrin adaptor, transport, coated PITS; 4.0A {Mus musculus} SCOP: i.23.1.1
Probab=99.40 E-value=2e-11 Score=134.53 Aligned_cols=273 Identities=19% Similarity=0.185 Sum_probs=173.2
Q ss_pred HHHHHHHHHHHHHHhhcChhhHHHHHhCCChHHHHHhhcCCCCCccccCCCccchHHHhHHHHHHHHhc-CChhhHHHHH
Q 005044 76 DRAAAKRATHVLAELAKNEEVVNWIVEGGAVPALVKHLQAPPTSEADRNLKPFEHEVEKGSAFALGLLA-VKPEHQQLIV 154 (717)
Q Consensus 76 ~~~~~~~a~~~L~~l~~~~~~~~~~~~~g~i~~L~~lL~~~~~~~~~~~~~~~~~~v~~~a~~~L~~l~-~~~~~~~~~~ 154 (717)
++.++..|+++|+++.. ++... ..++.+..+|.+.++ .||..|+.++.++. ..|+..
T Consensus 120 n~~vr~lAL~~L~~i~~-~~~~~-----~l~~~l~~~L~~~~~------------~VRk~A~~al~~l~~~~p~~v---- 177 (618)
T 1w63_A 120 TQFVQGLALCTLGCMGS-SEMCR-----DLAGEVEKLLKTSNS------------YLRKKAALCAVHVIRKVPELM---- 177 (618)
T ss_dssp SSHHHHHHHHHHHHHCC-HHHHH-----HHHHHHHHHHHSCCH------------HHHHHHHHHHHHHHHHCGGGG----
T ss_pred CHhHHHHHHHHHHhcCC-HHHHH-----HHHHHHHHHHcCCCH------------HHHHHHHHHHHHHHHHChHHH----
Confidence 45578889999998874 43322 347888889988765 99999999999999 666543
Q ss_pred hCCChHHHHHHHhccccCCCccchhHHHHHHHHHHHHHhhcCchhhhHHHhcCCcHHHHHhhcC---------------C
Q 005044 155 DNGALSHLVNLLKRHMDSNCSRAVNSVIRRAADAITNLAHENSSIKTRVRMEGGIPPLVELLEF---------------T 219 (717)
Q Consensus 155 ~~~~i~~L~~lL~~~~~~~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~---------------~ 219 (717)
.+.++.+..+|.+.+. .++..|+.+|..++..++.....+ ...++.++.+|.+ +
T Consensus 178 -~~~~~~l~~lL~D~d~--------~V~~~Al~~L~~i~~~~~~~~~~~--~~~v~~l~~~L~~~~~~~~~~~~~~~~~~ 246 (618)
T 1w63_A 178 -EMFLPATKNLLNEKNH--------GVLHTSVVLLTEMCERSPDMLAHF--RKLVPQLVRILKNLIMSGYSPEHDVSGIS 246 (618)
T ss_dssp -GGGGGGTTTSTTCCCH--------HHHHHHHHHHHHHCCSHHHHHHHH--HTTHHHHHHHHHHHHHSCCCTTTCSSSSS
T ss_pred -HHHHHHHHHHhCCCCH--------hHHHHHHHHHHHHHHhChHHHHHH--HHHHHHHHHHHHHHHcCCCCccccccCCC
Confidence 2567778888877655 899999999999987554432222 2567878776653 4
Q ss_pred CHHHHHHHHHHHHHhhccChhhHHHHHhcCCHHHHHHHHc------CCCHHHHHHHHHHHHHhhcCChHHHHHHHHcCCh
Q 005044 220 DTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLR------SEDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGAL 293 (717)
Q Consensus 220 ~~~v~~~a~~~L~~L~~~~~~~~~~~~~~g~i~~L~~ll~------~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~l 293 (717)
++-.+...+.+|..++..++.... ...+.|..++. +.+..+...|++++..+.. .+... ..++
T Consensus 247 ~~~~q~~il~~L~~l~~~~~~~~~-----~~~~~L~~l~~~~~~~~~~~~aV~~ea~~~i~~l~~-~~~l~-----~~a~ 315 (618)
T 1w63_A 247 DPFLQVRILRLLRILGRNDDDSSE-----AMNDILAQVATNTETSKNVGNAILYETVLTIMDIKS-ESGLR-----VLAI 315 (618)
T ss_dssp CHHHHHHHHHHHHHHTTTCHHHHH-----TTHHHHHHHHHTSCCSSTHHHHHHHHHHHHHHHSCC-CHHHH-----HHHH
T ss_pred CChHHHHHHHHHHHhCCCCHHHHH-----HHHHHHHHHHhccccccchHHHHHHHHHHHHHhcCC-CHHHH-----HHHH
Confidence 788888899999998875443221 23344444442 1234666777777766532 22211 1234
Q ss_pred HHHHHhhccCChHHHHHHHHHHHHHhcCChhhHHHHHhcCChHHHHHHhcCCCHHHHHHHHHHHHHhhcCCCCchhhHhc
Q 005044 294 QPVIGLLSSCCSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQSPDVQLREMSAFALGRLAQDMHNQAGIAHN 373 (717)
Q Consensus 294 ~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~l~~~~~l~~L~~~l~~~~~~v~~~a~~~L~~l~~~~~~~~~l~~~ 373 (717)
..|..++.+.++.++..|+.+|..++...+. ++ ......++..+.+++..+|..++.+|..++.... -..
T Consensus 316 ~~L~~~L~~~d~~vr~~aL~~L~~i~~~~p~----~~-~~~~~~i~~~l~d~d~~Ir~~alelL~~l~~~~n-v~~---- 385 (618)
T 1w63_A 316 NILGRFLLNNDKNIRYVALTSLLKTVQTDHN----AV-QRHRSTIVDCLKDLDVSIKRRAMELSFALVNGNN-IRG---- 385 (618)
T ss_dssp HHHHHHHTCSSTTTHHHHHHHHHHHHHHHHH----HH-GGGHHHHHHGGGSSCHHHHHHHHHHHHHHCCSSS-THH----
T ss_pred HHHHHHHhCCCCchHHHHHHHHHHHHhhCHH----HH-HHHHHHHHHHccCCChhHHHHHHHHHHHHccccc-HHH----
Confidence 5666666666667777777777776543222 11 1234556666666666677777776666665322 122
Q ss_pred CChHHHHHhhcCCChhHHHHHHHHHHhccC
Q 005044 374 GGLVPLLKLLDSKNGSLQHNAAFALYGLAD 403 (717)
Q Consensus 374 ~~l~~L~~ll~~~~~~v~~~a~~~L~~l~~ 403 (717)
.+..|...+.+.+.+++..++.+|..++.
T Consensus 386 -iv~eL~~~l~~~d~e~r~~~v~~I~~la~ 414 (618)
T 1w63_A 386 -MMKELLYFLDSCEPEFKADCASGIFLAAE 414 (618)
T ss_dssp -HHHHHHHHHHHCCHHHHHHHHHHHHHHHH
T ss_pred -HHHHHHHHHHhCCHHHHHHHHHHHHHHHH
Confidence 23455566666666666666666666654
No 78
>1w63_A Adapter-related protein complex 1 gamma 1 subunit; endocytosis, clathrin adaptor, transport, coated PITS; 4.0A {Mus musculus} SCOP: i.23.1.1
Probab=99.39 E-value=2.7e-10 Score=125.52 Aligned_cols=344 Identities=14% Similarity=0.154 Sum_probs=250.8
Q ss_pred HHHHHHHHHHhhc-ChhhHHHHHhCCChHHHHHhhcCCCCCccccCCCccchHHHhHHHHHHHHhcCChhhHHHHHhCCC
Q 005044 80 AKRATHVLAELAK-NEEVVNWIVEGGAVPALVKHLQAPPTSEADRNLKPFEHEVEKGSAFALGLLAVKPEHQQLIVDNGA 158 (717)
Q Consensus 80 ~~~a~~~L~~l~~-~~~~~~~~~~~g~i~~L~~lL~~~~~~~~~~~~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~ 158 (717)
+..+.-.+..++. +++.... ++..|.+-|+++++ .+|..|+++|+++.. ++.. ...
T Consensus 87 Krl~Yl~~~~~~~~~~e~~~l-----~in~l~kDL~~~n~------------~vr~lAL~~L~~i~~-~~~~-----~~l 143 (618)
T 1w63_A 87 KRIGYLGAMLLLDERQDVHLL-----MTNCIKNDLNHSTQ------------FVQGLALCTLGCMGS-SEMC-----RDL 143 (618)
T ss_dssp HHHHHHHHHHHCCCCHHHHHH-----HHHHHHHHHSCSSS------------HHHHHHHHHHHHHCC-HHHH-----HHH
T ss_pred HHHHHHHHHHHhCCCcHHHHH-----HHHHHHHhcCCCCH------------hHHHHHHHHHHhcCC-HHHH-----HHH
Confidence 3344445555555 3443222 36777777887766 999999999999984 3332 234
Q ss_pred hHHHHHHHhccccCCCccchhHHHHHHHHHHHHHhhcCchhhhHHHhcCCcHHHHHhhcCCCHHHHHHHHHHHHHhhccC
Q 005044 159 LSHLVNLLKRHMDSNCSRAVNSVIRRAADAITNLAHENSSIKTRVRMEGGIPPLVELLEFTDTKVQRAAAGALRTLAFKN 238 (717)
Q Consensus 159 i~~L~~lL~~~~~~~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~L~~~~ 238 (717)
++.+..+|.+.++ .++..|+.++.++...+++.. .++++.+..++.+.++.++..|+.+|..++..+
T Consensus 144 ~~~l~~~L~~~~~--------~VRk~A~~al~~l~~~~p~~v-----~~~~~~l~~lL~D~d~~V~~~Al~~L~~i~~~~ 210 (618)
T 1w63_A 144 AGEVEKLLKTSNS--------YLRKKAALCAVHVIRKVPELM-----EMFLPATKNLLNEKNHGVLHTSVVLLTEMCERS 210 (618)
T ss_dssp HHHHHHHHHSCCH--------HHHHHHHHHHHHHHHHCGGGG-----GGGGGGTTTSTTCCCHHHHHHHHHHHHHHCCSH
T ss_pred HHHHHHHHcCCCH--------HHHHHHHHHHHHHHHHChHHH-----HHHHHHHHHHhCCCCHhHHHHHHHHHHHHHHhC
Confidence 6788888887665 999999999999998776533 257788889999999999999999999999754
Q ss_pred hhhHHHHHhcCCHHHHHHHHcC---------------CCHHHHHHHHHHHHHhhcCChHHHHHHHHcCChHHHHHhhcc-
Q 005044 239 DENKNQIVECNALPTLILMLRS---------------EDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLSS- 302 (717)
Q Consensus 239 ~~~~~~~~~~g~i~~L~~ll~~---------------~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~l~~L~~ll~~- 302 (717)
++....+. ..++.++.+|.+ .++-.+...+.+|+.++..++... ...++.|..++..
T Consensus 211 ~~~~~~~~--~~v~~l~~~L~~~~~~~~~~~~~~~~~~~~~~q~~il~~L~~l~~~~~~~~-----~~~~~~L~~l~~~~ 283 (618)
T 1w63_A 211 PDMLAHFR--KLVPQLVRILKNLIMSGYSPEHDVSGISDPFLQVRILRLLRILGRNDDDSS-----EAMNDILAQVATNT 283 (618)
T ss_dssp HHHHHHHH--TTHHHHHHHHHHHHHSCCCTTTCSSSSSCHHHHHHHHHHHHHHTTTCHHHH-----HTTHHHHHHHHHTS
T ss_pred hHHHHHHH--HHHHHHHHHHHHHHcCCCCccccccCCCCChHHHHHHHHHHHhCCCCHHHH-----HHHHHHHHHHHhcc
Confidence 44322332 578888877753 478888999999999987665432 3355666666532
Q ss_pred -----CChHHHHHHHHHHHHHhcCChhhHHHHHhcCChHHHHHHhcCCCHHHHHHHHHHHHHhhcCCCCchhhHhcCChH
Q 005044 303 -----CCSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQSPDVQLREMSAFALGRLAQDMHNQAGIAHNGGLV 377 (717)
Q Consensus 303 -----~~~~~~~~a~~~L~~l~~~~~~~~~~l~~~~~l~~L~~~l~~~~~~v~~~a~~~L~~l~~~~~~~~~l~~~~~l~ 377 (717)
.+..+..+|+.++..+.. .+... ..+++.|..++.++++.+|..|+.+|..++...+ ..+ .....
T Consensus 284 ~~~~~~~~aV~~ea~~~i~~l~~-~~~l~-----~~a~~~L~~~L~~~d~~vr~~aL~~L~~i~~~~p---~~~-~~~~~ 353 (618)
T 1w63_A 284 ETSKNVGNAILYETVLTIMDIKS-ESGLR-----VLAINILGRFLLNNDKNIRYVALTSLLKTVQTDH---NAV-QRHRS 353 (618)
T ss_dssp CCSSTHHHHHHHHHHHHHHHSCC-CHHHH-----HHHHHHHHHHHTCSSTTTHHHHHHHHHHHHHHHH---HHH-GGGHH
T ss_pred ccccchHHHHHHHHHHHHHhcCC-CHHHH-----HHHHHHHHHHHhCCCCchHHHHHHHHHHHHhhCH---HHH-HHHHH
Confidence 235788889999988743 22221 1356788888999999999999999999986421 222 22456
Q ss_pred HHHHhhcCCChhHHHHHHHHHHhccCCCcchHHHHHhcCccccccchhHHhhhHHHHHHHHHHHHHHhhhchHHHHHHHH
Q 005044 378 PLLKLLDSKNGSLQHNAAFALYGLADNEDNVADFIRVGGVQKLQDGEFIVQATKDCVAKTLKRLEEKIHGRVLNHLLYLM 457 (717)
Q Consensus 378 ~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~l~~~~~i~~L~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~L~~ll 457 (717)
.++.++.+++..++..++.+|..++... +... +++.|...+
T Consensus 354 ~i~~~l~d~d~~Ir~~alelL~~l~~~~-nv~~--------------------------------------iv~eL~~~l 394 (618)
T 1w63_A 354 TIVDCLKDLDVSIKRRAMELSFALVNGN-NIRG--------------------------------------MMKELLYFL 394 (618)
T ss_dssp HHHHGGGSSCHHHHHHHHHHHHHHCCSS-STHH--------------------------------------HHHHHHHHH
T ss_pred HHHHHccCCChhHHHHHHHHHHHHcccc-cHHH--------------------------------------HHHHHHHHH
Confidence 7888999999999999999999998643 2111 456688888
Q ss_pred hhcchhHHHHHHHHHHhccCCCCCceeeecCCCHHHHHHHhcCCCchhhhhhHHHHHHhhhc
Q 005044 458 RVAEKGVQRRVALALAHLCSPDDQRTIFIDGGGLELLLGLLGSTNPKQQLDGAVALFKLANK 519 (717)
Q Consensus 458 ~~~~~~v~~~a~~aL~~l~~~~~~~~~~~~~~~l~~L~~ll~~~~~~v~~~a~~~l~~L~~~ 519 (717)
.+.+.+++..++.+|+.++..-... ....++.|++++......++..++..+..+...
T Consensus 395 ~~~d~e~r~~~v~~I~~la~k~~~~----~~~~v~~ll~lL~~~~~~v~~~~~~~l~~ii~~ 452 (618)
T 1w63_A 395 DSCEPEFKADCASGIFLAAEKYAPS----KRWHIDTIMRVLTTAGSYVRDDAVPNLIQLITN 452 (618)
T ss_dssp HHCCHHHHHHHHHHHHHHHHSSCCC----HHHHHHHHHHHHHHTGGGSCSSHHHHHHHHHHH
T ss_pred HhCCHHHHHHHHHHHHHHHHHhCcc----HHHHHHHHHHHHHhccchhHHHHHHHHHHHHhc
Confidence 8899999999999999997642111 123578888999887777888888888888875
No 79
>2ast_A S-phase kinase-associated protein 1A; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} PDB: 2ass_A* 2e31_B 2e32_B 3l2o_A 1p22_B* 2ovr_A* 2ovp_A 1fqv_B* 2ovq_A*
Probab=99.39 E-value=1.9e-12 Score=114.08 Aligned_cols=103 Identities=17% Similarity=0.271 Sum_probs=86.1
Q ss_pred EEEEE-cCeEeehhHHHHhhccHHHHHhhcC-CCC-CCCCcceEcCCCCHHHHHHHHHHHhcCc----------------
Q 005044 552 VTFLV-EGRRFYAHRICLLASSDAFRAMFDG-GYR-EKDARDIEIPNIRWEVFELMMRFIYTGS---------------- 612 (717)
Q Consensus 552 v~~~~-~~~~~~~h~~il~~~s~~f~~~~~~-~~~-e~~~~~i~l~~~~~~~~~~~l~~~Yt~~---------------- 612 (717)
|++.. +|..|.+|+.+ ++.|+||++||.+ ++. |+.+..|++++++..+++.+++|+|++.
T Consensus 3 v~L~ssDg~~f~v~~~v-A~~S~~i~~m~~~~~~~~e~~~~~Ipl~~V~~~iL~kViey~~~h~~~~~~~~~~~~~~~~~ 81 (159)
T 2ast_A 3 IKLQSSDGEIFEVDVEI-AKQSVTIKTMLEDLGMDDEGDDDPVPLPNVNAAILKKVIQWCTHHKDDPPPPEDDENKEKRT 81 (159)
T ss_dssp EEEECTTSCEEEEEHHH-HHTCHHHHHHTTSSCSS------CEECTTSCHHHHHHHHHHHHHTTTCCC-----------C
T ss_pred EEEEcCCCCEEEeCHHH-HHHhHHHHHHHHhcCCcccccCCCcCCCCccHHHHHHHHHHHHHcCcCCCCcccccccccch
Confidence 55654 68999999999 8899999999998 777 7777899999999999999999999987
Q ss_pred ----------cccchhhHHHHHHHHHhhChHhHHHHHHHHHHhcCChhcHHHH
Q 005044 613 ----------VDVTLDIAQDLLRAADQYLLEGLKRLCEYTIAQDISLENVSSM 655 (717)
Q Consensus 613 ----------~~~~~~~~~~ll~~A~~~~~~~l~~~c~~~l~~~i~~~n~~~~ 655 (717)
+.++.+++.+|+.+|++|+++.|.+.|..++...+...++..+
T Consensus 82 ~~i~~wD~~F~~id~~~l~eLl~AAnyL~I~~Lld~~c~~va~~i~gkt~eei 134 (159)
T 2ast_A 82 DDIPVWDQEFLKVDQGTLFELILAANYLDIKGLLDVTCKTVANMIKGKTPEEI 134 (159)
T ss_dssp CCCCHHHHHHTCSCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHSSCCHHHH
T ss_pred hhhhHHHHHHHcCCHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCCCHHHH
Confidence 6788999999999999999999999999999777654444433
No 80
>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic}
Probab=99.38 E-value=3.2e-11 Score=112.80 Aligned_cols=184 Identities=28% Similarity=0.319 Sum_probs=158.0
Q ss_pred CCcHHHHHhhcCCCHHHHHHHHHHHHHhhccChhhHHHHHhcCCHHHHHHHHcCCCHHHHHHHHHHHHHhhcCChHHHHH
Q 005044 207 GGIPPLVELLEFTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSEDSAIHYEAVGVIGNLVHSSPNIKKE 286 (717)
Q Consensus 207 ~~i~~L~~ll~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~ 286 (717)
+..+.+++.|.++++.+|..|+.+|..+.. .+.++.|++++.++++.++..++++|+.+.. +
T Consensus 14 ~~~~~~i~~L~~~~~~vr~~A~~~L~~~~~-----------~~~~~~L~~~l~~~~~~vr~~a~~~L~~~~~--~----- 75 (201)
T 3ltj_A 14 EKVEMYIKNLQDDSYYVRRAAAYALGKIGD-----------ERAVEPLIKALKDEDAWVRRAAADALGQIGD--E----- 75 (201)
T ss_dssp HHHHHHHHHTTCSCHHHHHHHHHHHHHHCC-----------GGGHHHHHHHTTCSSHHHHHHHHHHHHHHCC--G-----
T ss_pred cchHHHHHHhcCCCHHHHHHHHHHHHhcCC-----------hhHHHHHHHHHcCCCHHHHHHHHHHHHhhCC--H-----
Confidence 456889999999999999999999998863 2468999999999999999999999999842 2
Q ss_pred HHHcCChHHHHHhhccCChHHHHHHHHHHHHHhcCChhhHHHHHhcCChHHHHHHhcCCCHHHHHHHHHHHHHhhcCCCC
Q 005044 287 VLAAGALQPVIGLLSSCCSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQSPDVQLREMSAFALGRLAQDMHN 366 (717)
Q Consensus 287 ~~~~g~l~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~l~~~~~l~~L~~~l~~~~~~v~~~a~~~L~~l~~~~~~ 366 (717)
..++.|+.++.++++.++..++++|+++.. ...++.|+.++.++++.+|..++++|+++..
T Consensus 76 ----~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~-----------~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~---- 136 (201)
T 3ltj_A 76 ----RAVEPLIKALKDEDGWVRQSAAVALGQIGD-----------ERAVEPLIKALKDEDWFVRIAAAFALGEIGD---- 136 (201)
T ss_dssp ----GGHHHHHHHTTCSSHHHHHHHHHHHHHHCC-----------GGGHHHHHHHTTCSSHHHHHHHHHHHHHHTC----
T ss_pred ----HHHHHHHHHHcCCCHHHHHHHHHHHHHhCc-----------HHHHHHHHHHHcCCCHHHHHHHHHHHHHhCC----
Confidence 357889999999999999999999999842 2367889999999999999999999999853
Q ss_pred chhhHhcCChHHHHHhhcCCChhHHHHHHHHHHhccCCCcchHHHHHhcCccccccchhHHhhhHHHHHHHHHHHHHHhh
Q 005044 367 QAGIAHNGGLVPLLKLLDSKNGSLQHNAAFALYGLADNEDNVADFIRVGGVQKLQDGEFIVQATKDCVAKTLKRLEEKIH 446 (717)
Q Consensus 367 ~~~l~~~~~l~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~l~~~~~i~~L~~~~~~~~~~~~~~~~~~~~l~~~~~ 446 (717)
...++.|.+++.+.++.++..++.+|..+...
T Consensus 137 ------~~~~~~L~~~l~d~~~~vr~~A~~aL~~~~~~------------------------------------------ 168 (201)
T 3ltj_A 137 ------ERAVEPLIKALKDEDGWVRQSAADALGEIGGE------------------------------------------ 168 (201)
T ss_dssp ------GGGHHHHHHHTTCSSHHHHHHHHHHHHHHCSH------------------------------------------
T ss_pred ------HHHHHHHHHHHcCCCHHHHHHHHHHHHHhCch------------------------------------------
Confidence 34688899999999999999999999988421
Q ss_pred hchHHHHHHHHhhcchhHHHHHHHHHHhcc
Q 005044 447 GRVLNHLLYLMRVAEKGVQRRVALALAHLC 476 (717)
Q Consensus 447 ~~~~~~L~~ll~~~~~~v~~~a~~aL~~l~ 476 (717)
..++.|..++.++++.+|..|..+|.++.
T Consensus 169 -~~~~~L~~~l~d~~~~vr~~A~~aL~~l~ 197 (201)
T 3ltj_A 169 -RVRAAMEKLAETGTGFARKVAVNYLETHK 197 (201)
T ss_dssp -HHHHHHHHHHHHCCHHHHHHHHHHHHHCC
T ss_pred -hHHHHHHHHHhCCCHHHHHHHHHHHHHHH
Confidence 15677888999999999999999999874
No 81
>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic}
Probab=99.36 E-value=1.5e-11 Score=115.10 Aligned_cols=185 Identities=24% Similarity=0.265 Sum_probs=158.3
Q ss_pred CCHHHHHHHHcCCCHHHHHHHHHHHHHhhcCChHHHHHHHHcCChHHHHHhhccCChHHHHHHHHHHHHHhcCChhhHHH
Q 005044 249 NALPTLILMLRSEDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLSSCCSESQREAALLLGQFAATDSDCKVH 328 (717)
Q Consensus 249 g~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~l~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~ 328 (717)
+..+.++++|+++++.++..|+++|+.+.. .+.++.|+.++.++++.++..++.+|+.+..
T Consensus 14 ~~~~~~i~~L~~~~~~vr~~A~~~L~~~~~-----------~~~~~~L~~~l~~~~~~vr~~a~~~L~~~~~-------- 74 (201)
T 3ltj_A 14 EKVEMYIKNLQDDSYYVRRAAAYALGKIGD-----------ERAVEPLIKALKDEDAWVRRAAADALGQIGD-------- 74 (201)
T ss_dssp HHHHHHHHHTTCSCHHHHHHHHHHHHHHCC-----------GGGHHHHHHHTTCSSHHHHHHHHHHHHHHCC--------
T ss_pred cchHHHHHHhcCCCHHHHHHHHHHHHhcCC-----------hhHHHHHHHHHcCCCHHHHHHHHHHHHhhCC--------
Confidence 457889999999999999999999998742 2458889999999999999999999998842
Q ss_pred HHhcCChHHHHHHhcCCCHHHHHHHHHHHHHhhcCCCCchhhHhcCChHHHHHhhcCCChhHHHHHHHHHHhccCCCcch
Q 005044 329 IVQRGAVRPLIEMLQSPDVQLREMSAFALGRLAQDMHNQAGIAHNGGLVPLLKLLDSKNGSLQHNAAFALYGLADNEDNV 408 (717)
Q Consensus 329 l~~~~~l~~L~~~l~~~~~~v~~~a~~~L~~l~~~~~~~~~l~~~~~l~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~ 408 (717)
...++.|+.++.++++.+|..++++|+++.. ...++.|++++.+.++.++..++++|..+...
T Consensus 75 ---~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~----------~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~~---- 137 (201)
T 3ltj_A 75 ---ERAVEPLIKALKDEDGWVRQSAAVALGQIGD----------ERAVEPLIKALKDEDWFVRIAAAFALGEIGDE---- 137 (201)
T ss_dssp ---GGGHHHHHHHTTCSSHHHHHHHHHHHHHHCC----------GGGHHHHHHHTTCSSHHHHHHHHHHHHHHTCG----
T ss_pred ---HHHHHHHHHHHcCCCHHHHHHHHHHHHHhCc----------HHHHHHHHHHHcCCCHHHHHHHHHHHHHhCCH----
Confidence 2467889999999999999999999999753 24678899999999999999999999988531
Q ss_pred HHHHHhcCccccccchhHHhhhHHHHHHHHHHHHHHhhhchHHHHHHHHhhcchhHHHHHHHHHHhccCCCCCceeeecC
Q 005044 409 ADFIRVGGVQKLQDGEFIVQATKDCVAKTLKRLEEKIHGRVLNHLLYLMRVAEKGVQRRVALALAHLCSPDDQRTIFIDG 488 (717)
Q Consensus 409 ~~l~~~~~i~~L~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~~~~ 488 (717)
..++.|..++.++++.+|..++.+|+.+. ..
T Consensus 138 ---------------------------------------~~~~~L~~~l~d~~~~vr~~A~~aL~~~~----------~~ 168 (201)
T 3ltj_A 138 ---------------------------------------RAVEPLIKALKDEDGWVRQSAADALGEIG----------GE 168 (201)
T ss_dssp ---------------------------------------GGHHHHHHHTTCSSHHHHHHHHHHHHHHC----------SH
T ss_pred ---------------------------------------HHHHHHHHHHcCCCHHHHHHHHHHHHHhC----------ch
Confidence 15677899999999999999999999983 23
Q ss_pred CCHHHHHHHhcCCCchhhhhhHHHHHHhhh
Q 005044 489 GGLELLLGLLGSTNPKQQLDGAVALFKLAN 518 (717)
Q Consensus 489 ~~l~~L~~ll~~~~~~v~~~a~~~l~~L~~ 518 (717)
.+++.|..++.++++.+|..|.++|.++..
T Consensus 169 ~~~~~L~~~l~d~~~~vr~~A~~aL~~l~~ 198 (201)
T 3ltj_A 169 RVRAAMEKLAETGTGFARKVAVNYLETHKS 198 (201)
T ss_dssp HHHHHHHHHHHHCCHHHHHHHHHHHHHCC-
T ss_pred hHHHHHHHHHhCCCHHHHHHHHHHHHHHHh
Confidence 578999999999999999999999988754
No 82
>1u6g_C TIP120 protein, CAND1; cullin repeat, heat repeat, ring finger, ligase; 3.10A {Homo sapiens} SCOP: a.118.1.2 PDB: 4a0c_A
Probab=99.25 E-value=2.7e-10 Score=137.15 Aligned_cols=411 Identities=14% Similarity=0.068 Sum_probs=249.3
Q ss_pred HHHHHHHHHHHHHHhhcChhhH-HHHHhCCChHHHHHhhcCCCCCccccCCCccchHHHhHHHHHHHHhc-CChh-hHHH
Q 005044 76 DRAAAKRATHVLAELAKNEEVV-NWIVEGGAVPALVKHLQAPPTSEADRNLKPFEHEVEKGSAFALGLLA-VKPE-HQQL 152 (717)
Q Consensus 76 ~~~~~~~a~~~L~~l~~~~~~~-~~~~~~g~i~~L~~lL~~~~~~~~~~~~~~~~~~v~~~a~~~L~~l~-~~~~-~~~~ 152 (717)
|..+|..|...|.+....+... ..-.....++.|++.|.+.+. .+|..|+.+|+.++ ..++ ..
T Consensus 19 d~~~R~~A~~~L~~~l~~~~~~~~~~~~~~il~~Ll~~L~d~~~------------~vR~~A~~~L~~l~~~~~~~~~-- 84 (1230)
T 1u6g_C 19 DKDFRFMATNDLMTELQKDSIKLDDDSERKVVKMILKLLEDKNG------------EVQNLAVKCLGPLVSKVKEYQV-- 84 (1230)
T ss_dssp SHHHHHHHHHHHHHHTSSSCCSCCTTHHHHHHHHHHHHTTCSSH------------HHHHHHHHHHHHHHTTSCHHHH--
T ss_pred CHhHHHHHHHHHHHHHcccccCCChhHHHHHHHHHHHHhcCCCH------------HHHHHHHHHHHHHHHhCCHHHH--
Confidence 5567899988888766532100 000011246788888875444 99999999999998 3222 11
Q ss_pred HHhCCChHHHHHHHhccccCCCccchhHHHHHHHHHHHHHhhcCchhh-----hHHHhcCCcHHHHHhhc-CCCHHHHHH
Q 005044 153 IVDNGALSHLVNLLKRHMDSNCSRAVNSVIRRAADAITNLAHENSSIK-----TRVRMEGGIPPLVELLE-FTDTKVQRA 226 (717)
Q Consensus 153 ~~~~~~i~~L~~lL~~~~~~~~~~~~~~~~~~a~~~L~~l~~~~~~~~-----~~~~~~~~i~~L~~ll~-~~~~~v~~~ 226 (717)
...++.++..+.+.+. .++..++.+|..++....... ..-.....+|.|...+. ++++.++..
T Consensus 85 ---~~i~~~Ll~~l~d~~~--------~vR~~a~~~L~~i~~~l~~~~~~~~~~~~~~~~llp~L~~~l~~~~~~~~~~~ 153 (1230)
T 1u6g_C 85 ---ETIVDTLCTNMLSDKE--------QLRDISSIGLKTVIGELPPASSGSALAANVCKKITGRLTSAIAKQEDVSVQLE 153 (1230)
T ss_dssp ---HHHHHHHHHHTTCSSS--------HHHHHHHHHHHHHHHHCC-----CCTHHHHHHHHHHHHHHHHSCCSCHHHHHH
T ss_pred ---HHHHHHHHHHhcCCcH--------HHHHHHHHHHHHHHHhCCCcccccchHHHHHHHHHHHHHHHHcCCCchHHHHH
Confidence 1235667776665554 788899999999886543320 01112346788999888 588999999
Q ss_pred HHHHHHHhhccChhhHHHHHhcCCHHHHHHHHcCCCHHHHHHHHHHHHHhhcCChHHHHHHHHcCChHHHHHhhccCC-h
Q 005044 227 AAGALRTLAFKNDENKNQIVECNALPTLILMLRSEDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLSSCC-S 305 (717)
Q Consensus 227 a~~~L~~L~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~l~~L~~ll~~~~-~ 305 (717)
|+.+|..++........... ..+++.++..+.++++.+|..|+.+|+.++...+. .+ -...++.++..+.+.. .
T Consensus 154 al~~l~~~~~~~~~~l~~~~-~~ll~~l~~~L~~~~~~vR~~a~~al~~l~~~~~~---~~-~~~~l~~l~~~L~~~~~~ 228 (1230)
T 1u6g_C 154 ALDIMADMLSRQGGLLVNFH-PSILTCLLPQLTSPRLAVRKRTIIALGHLVMSCGN---IV-FVDLIEHLLSELSKNDSM 228 (1230)
T ss_dssp HHHHHHHHHHHTCSSCTTTH-HHHHHHHGGGGGCSSHHHHHHHHHHHHHHTTTC--------CTTHHHHHHHHHHHTCSS
T ss_pred HHHHHHHHHHHhHhHHHHHH-HHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHhcCH---HH-HHHHHHHHHHHhccCCch
Confidence 99999999852221110011 23567788888888999999999999999865432 11 2345778888776653 4
Q ss_pred HHHHHHHHHHHHHhcCChhhHHHHHhcCChHHHHHHhcCCCHHHHHHHHHHHHHhhcCCCCchhhHhcCChHHHHHhhc-
Q 005044 306 ESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQSPDVQLREMSAFALGRLAQDMHNQAGIAHNGGLVPLLKLLD- 384 (717)
Q Consensus 306 ~~~~~a~~~L~~l~~~~~~~~~~l~~~~~l~~L~~~l~~~~~~v~~~a~~~L~~l~~~~~~~~~l~~~~~l~~L~~ll~- 384 (717)
.++..++.+++.++...+..... .-..+++.++..+.+.++.+|..++.++..++......-.-.-...++.+++.+.
T Consensus 229 ~~r~~a~~~l~~l~~~~~~~~~~-~l~~l~~~ll~~l~d~~~~vR~~a~~~l~~l~~~~~~~~~~~l~~li~~ll~~l~~ 307 (1230)
T 1u6g_C 229 STTRTYIQCIAAISRQAGHRIGE-YLEKIIPLVVKFCNVDDDELREYCIQAFESFVRRCPKEVYPHVSTIINICLKYLTY 307 (1230)
T ss_dssp CSCTTHHHHHHHHHHHSSGGGTT-SCTTHHHHHHHHHSSCCTTTHHHHHHHHHHHHHCTTCCCHHHHHHHHHHHTTCCCC
T ss_pred hHHHHHHHHHHHHHHHhHHHHHH-HHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHChHHHHHhHHHHHHHHHHHhCC
Confidence 57777888888887543321111 1246889999999988899999999999999874332110011112222322221
Q ss_pred ------------------------------------CCChhHHHHHHHHHHhccCCCcc-hHHHHHhcCccccccch-hH
Q 005044 385 ------------------------------------SKNGSLQHNAAFALYGLADNEDN-VADFIRVGGVQKLQDGE-FI 426 (717)
Q Consensus 385 ------------------------------------~~~~~v~~~a~~~L~~l~~~~~~-~~~l~~~~~i~~L~~~~-~~ 426 (717)
+..+.++..|+.++..++..... ...+.. ..++.+.... ..
T Consensus 308 d~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~vR~~A~~~l~~l~~~~~~~~~~~~~-~l~~~l~~~l~d~ 386 (1230)
T 1u6g_C 308 DPNYNYDDEDEDENAMDADGGDDDDQGSDDEYSDDDDMSWKVRRAAAKCLDAVVSTRHEMLPEFYK-TVSPALISRFKER 386 (1230)
T ss_dssp C------------------------------------CTTHHHHHHHHHHHHHHTTCCTTHHHHHT-TTHHHHHSTTSCS
T ss_pred CCCCCCcccccccccccccccccchhhcccccccccccCHHHHHHHHHHHHHHHHhchhHHHHHHH-HHHHHHHHHcCCC
Confidence 12356788899999888753221 122221 1222222211 11
Q ss_pred HhhhHHHHHH----HHHHH----------------------HHHhhhchHHHHHHHHhhcchhHHHHHHHHHHhccCCCC
Q 005044 427 VQATKDCVAK----TLKRL----------------------EEKIHGRVLNHLLYLMRVAEKGVQRRVALALAHLCSPDD 480 (717)
Q Consensus 427 ~~~~~~~~~~----~~~~l----------------------~~~~~~~~~~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~ 480 (717)
....+..+.. .+... ....-..+++.+...++++++.+|..++.+|+.++....
T Consensus 387 ~~~Vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~l~~~l~~~~~~vr~~~~~~L~~l~~~~~ 466 (1230)
T 1u6g_C 387 EENVKADVFHAYLSLLKQTRPVQSWLCDPDAMEQGETPLTMLQSQVPNIVKALHKQMKEKSVKTRQCCFNMLTELVNVLP 466 (1230)
T ss_dssp SSHHHHHHHHHHHHHHHHHCCC------------CCCHHHHHHHHTTHHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHST
T ss_pred chHHHHHHHHHHHHHHHHhccccccccCccccccccchHHHHHHHhhHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHch
Confidence 1122222221 22211 011223456666667888999999999999998865422
Q ss_pred CceeeecCCCHHHHHHHhcCCCc--hhhhhhHHHHHHhhh
Q 005044 481 QRTIFIDGGGLELLLGLLGSTNP--KQQLDGAVALFKLAN 518 (717)
Q Consensus 481 ~~~~~~~~~~l~~L~~ll~~~~~--~v~~~a~~~l~~L~~ 518 (717)
..-.-.-...++.+...+.+.++ .++..++..+..+..
T Consensus 467 ~~l~~~l~~ll~~l~~~L~d~~~~~~v~~~a~~~l~~~~~ 506 (1230)
T 1u6g_C 467 GALTQHIPVLVPGIIFSLNDKSSSSNLKIDALSCLYVILC 506 (1230)
T ss_dssp TTTGGGHHHHHHHHHHHTTCSSSCHHHHHHHHHHHHHHHH
T ss_pred hhhHHHHHHHHHHHHHHHcCCCCcchHHHHHHHHHHHHHH
Confidence 11000123567888888888765 888888888888865
No 83
>1u6g_C TIP120 protein, CAND1; cullin repeat, heat repeat, ring finger, ligase; 3.10A {Homo sapiens} SCOP: a.118.1.2 PDB: 4a0c_A
Probab=99.17 E-value=4.7e-10 Score=135.05 Aligned_cols=399 Identities=12% Similarity=0.094 Sum_probs=249.2
Q ss_pred HHHHhhhhhccccchHHHHHHHHHHHHHHHHhhc--ChhhHHHHHhCCChHHHHHhhcCCCCCccccCCCccchHHHhHH
Q 005044 59 VSAQVNVLNTTFSWLEADRAAAKRATHVLAELAK--NEEVVNWIVEGGAVPALVKHLQAPPTSEADRNLKPFEHEVEKGS 136 (717)
Q Consensus 59 i~~l~~~L~~~~~~~~~~~~~~~~a~~~L~~l~~--~~~~~~~~~~~g~i~~L~~lL~~~~~~~~~~~~~~~~~~v~~~a 136 (717)
.+.+++.|...+... .+..++..|+.+|..++. ++.....+ ...++.|+..|.+.+. .+|..|
T Consensus 131 ~~~llp~L~~~l~~~-~~~~~~~~al~~l~~~~~~~~~~l~~~~--~~ll~~l~~~L~~~~~------------~vR~~a 195 (1230)
T 1u6g_C 131 CKKITGRLTSAIAKQ-EDVSVQLEALDIMADMLSRQGGLLVNFH--PSILTCLLPQLTSPRL------------AVRKRT 195 (1230)
T ss_dssp HHHHHHHHHHHHSCC-SCHHHHHHHHHHHHHHHHHTCSSCTTTH--HHHHHHHGGGGGCSSH------------HHHHHH
T ss_pred HHHHHHHHHHHHcCC-CchHHHHHHHHHHHHHHHHhHhHHHHHH--HHHHHHHHHHHcCCcH------------HHHHHH
Confidence 344455554444321 234568999999998875 11110000 2246778888876554 899999
Q ss_pred HHHHHHhcCChhhHHHHHhCCChHHHHHHHhccccCCCccchhHHHHHHHHHHHHHhhcCchhhhHHHhcCCcHHHHHhh
Q 005044 137 AFALGLLAVKPEHQQLIVDNGALSHLVNLLKRHMDSNCSRAVNSVIRRAADAITNLAHENSSIKTRVRMEGGIPPLVELL 216 (717)
Q Consensus 137 ~~~L~~l~~~~~~~~~~~~~~~i~~L~~lL~~~~~~~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll 216 (717)
+.+|+.++..... .+ -...++.++..|...... .++..++.++..++...+..- .-.-...++.++..+
T Consensus 196 ~~al~~l~~~~~~--~~-~~~~l~~l~~~L~~~~~~-------~~r~~a~~~l~~l~~~~~~~~-~~~l~~l~~~ll~~l 264 (1230)
T 1u6g_C 196 IIALGHLVMSCGN--IV-FVDLIEHLLSELSKNDSM-------STTRTYIQCIAAISRQAGHRI-GEYLEKIIPLVVKFC 264 (1230)
T ss_dssp HHHHHHHTTTC-------CTTHHHHHHHHHHHTCSS-------CSCTTHHHHHHHHHHHSSGGG-TTSCTTHHHHHHHHH
T ss_pred HHHHHHHHHhcCH--HH-HHHHHHHHHHHhccCCch-------hHHHHHHHHHHHHHHHhHHHH-HHHHHHHHHHHHHHh
Confidence 9999999932211 11 234578888888765321 455667888888876443210 001235678888888
Q ss_pred cCCCHHHHHHHHHHHHHhhccChhhHHHHHhcCCHHHHHHHHcC------------------------------------
Q 005044 217 EFTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRS------------------------------------ 260 (717)
Q Consensus 217 ~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~g~i~~L~~ll~~------------------------------------ 260 (717)
.+.++++|..++.++..++...+....... ..+++.+++.+..
T Consensus 265 ~d~~~~vR~~a~~~l~~l~~~~~~~~~~~l-~~li~~ll~~l~~d~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ 343 (1230)
T 1u6g_C 265 NVDDDELREYCIQAFESFVRRCPKEVYPHV-STIINICLKYLTYDPNYNYDDEDEDENAMDADGGDDDDQGSDDEYSDDD 343 (1230)
T ss_dssp SSCCTTTHHHHHHHHHHHHHCTTCCCHHHH-HHHHHHHTTCCCCC-----------------------------------
T ss_pred cCCCHHHHHHHHHHHHHHHHHChHHHHHhH-HHHHHHHHHHhCCCCCCCCcccccccccccccccccchhhccccccccc
Confidence 888899999999999988864332211111 1234444443321
Q ss_pred -CCHHHHHHHHHHHHHhhcCChHHHHHHHHcCChHHHHHhhccCChHHHHHHHHHHHHHhcCCh----------------
Q 005044 261 -EDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLSSCCSESQREAALLLGQFAATDS---------------- 323 (717)
Q Consensus 261 -~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~l~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~---------------- 323 (717)
....+|..|+.++..++...+.... ..-..+++.++..+.+.+..+|..++.++..+.....
T Consensus 344 d~~~~vR~~A~~~l~~l~~~~~~~~~-~~~~~l~~~l~~~l~d~~~~Vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~~ 422 (1230)
T 1u6g_C 344 DMSWKVRRAAAKCLDAVVSTRHEMLP-EFYKTVSPALISRFKEREENVKADVFHAYLSLLKQTRPVQSWLCDPDAMEQGE 422 (1230)
T ss_dssp -CTTHHHHHHHHHHHHHHTTCCTTHH-HHHTTTHHHHHSTTSCSSSHHHHHHHHHHHHHHHHHCCC------------CC
T ss_pred ccCHHHHHHHHHHHHHHHHhchhHHH-HHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHHhccccccccCcccccccc
Confidence 0124688899999988764332212 2235678888888888889999999988877753110
Q ss_pred hhHH--HHHhcCChHHHHHHhcCCCHHHHHHHHHHHHHhhcCCCCchhhHhcCChHHHHHhhcCCCh--hHHHHHHHHHH
Q 005044 324 DCKV--HIVQRGAVRPLIEMLQSPDVQLREMSAFALGRLAQDMHNQAGIAHNGGLVPLLKLLDSKNG--SLQHNAAFALY 399 (717)
Q Consensus 324 ~~~~--~l~~~~~l~~L~~~l~~~~~~v~~~a~~~L~~l~~~~~~~~~l~~~~~l~~L~~ll~~~~~--~v~~~a~~~L~ 399 (717)
.... .-.-..+++.+...++++++.+|..++.+|+.++......-.-.-...++.++..+.+.++ .++..++..+.
T Consensus 423 ~~~~~~~~~l~~ll~~l~~~l~~~~~~vr~~~~~~L~~l~~~~~~~l~~~l~~ll~~l~~~L~d~~~~~~v~~~a~~~l~ 502 (1230)
T 1u6g_C 423 TPLTMLQSQVPNIVKALHKQMKEKSVKTRQCCFNMLTELVNVLPGALTQHIPVLVPGIIFSLNDKSSSSNLKIDALSCLY 502 (1230)
T ss_dssp CHHHHHHHHTTHHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHSTTTTGGGHHHHHHHHHHHTTCSSSCHHHHHHHHHHHH
T ss_pred chHHHHHHHhhHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHchhhhHHHHHHHHHHHHHHHcCCCCcchHHHHHHHHHH
Confidence 0001 1111345666777799999999999999999988743221111123456667788877654 88888888888
Q ss_pred hccCC--CcchHHHHHhcCccccccchhHHhhhHHHHHHHHHHHHHHhhhchHHHHHHHHhhcchhHHHHHHHHHHhccC
Q 005044 400 GLADN--EDNVADFIRVGGVQKLQDGEFIVQATKDCVAKTLKRLEEKIHGRVLNHLLYLMRVAEKGVQRRVALALAHLCS 477 (717)
Q Consensus 400 ~l~~~--~~~~~~l~~~~~i~~L~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~L~~ll~~~~~~v~~~a~~aL~~l~~ 477 (717)
.+... ++.... +-..+++.|+..+.+.++.++..++.++..++.
T Consensus 503 ~~~~~~~~~~~~~----------------------------------~l~~llp~L~~~l~d~~~~v~~~al~~l~~l~~ 548 (1230)
T 1u6g_C 503 VILCNHSPQVFHP----------------------------------HVQALVPPVVACVGDPFYKITSEALLVTQQLVK 548 (1230)
T ss_dssp HHHHSSCGGGGHH----------------------------------HHTTTHHHHHHHHTCSSHHHHHHHHHHHHHHHH
T ss_pred HHHHhCCHHHHHh----------------------------------HHHHHHHHHHHHHcccchHHHHHHHHHHHHHHH
Confidence 77532 111111 112378888889999888898888888887762
Q ss_pred C--C---C--CceeeecCCCHHHHHHHh--cCCCchhhhhhHHHHHHhhhc
Q 005044 478 P--D---D--QRTIFIDGGGLELLLGLL--GSTNPKQQLDGAVALFKLANK 519 (717)
Q Consensus 478 ~--~---~--~~~~~~~~~~l~~L~~ll--~~~~~~v~~~a~~~l~~L~~~ 519 (717)
. + . ....-.-...++.++..+ .+.++.+|..|+.++..|+..
T Consensus 549 ~~~~~~~~~~~~~~~~~~~ll~~ll~~l~~~d~~~~vr~~a~~~lg~L~~~ 599 (1230)
T 1u6g_C 549 VIRPLDQPSSFDATPYIKDLFTCTIKRLKAADIDQEVKERAISCMGQIICN 599 (1230)
T ss_dssp HHCCSSSCCCCCCHHHHHHHHHHHHHHHSCSSSCHHHHHHHHHHHHHHHHH
T ss_pred HhcCcccccccchHHHHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHH
Confidence 2 1 0 010111234677778878 567888999999999999875
No 84
>4ajy_C Transcription elongation factor B polypeptide 1; E3 ubiquitin ligase, transcription factor, hypoxic signaling transcription; 1.73A {Homo sapiens} PDB: 2izv_C 3dcg_B 3zrc_B* 3zrf_B 3ztc_B* 3ztd_B* 3zun_B* 2c9w_C 4awj_B* 4b95_B* 4b9k_B* 2fnj_C 1lqb_B 1lm8_C 2jz3_C 2xai_B 4b9k_E*
Probab=99.09 E-value=2.4e-10 Score=91.01 Aligned_cols=79 Identities=23% Similarity=0.403 Sum_probs=64.7
Q ss_pred EEEEE-cCeEeehhHHHHhhccHHHHHhhcC--CCCCCCCcceEcCCCCHHHHHHHHHHHh-----c---Cccc---cch
Q 005044 552 VTFLV-EGRRFYAHRICLLASSDAFRAMFDG--GYREKDARDIEIPNIRWEVFELMMRFIY-----T---GSVD---VTL 617 (717)
Q Consensus 552 v~~~~-~~~~~~~h~~il~~~s~~f~~~~~~--~~~e~~~~~i~l~~~~~~~~~~~l~~~Y-----t---~~~~---~~~ 617 (717)
|++.. +|..|.+||.+ ++.|+||++||.+ ++.|+.+..|++++++..+++.+++|+| + +.++ ++.
T Consensus 4 v~L~SsDg~~F~v~r~v-A~~S~~ik~m~~~~~~~~E~~~~~I~l~~V~~~iL~kViey~~~h~~~~~~~~~i~~~~i~~ 82 (97)
T 4ajy_C 4 VKLISSDGHEFIVKREH-ALTSGTIKAMLSGPGQFAENETNEVNFREIPSHVLSKVCMYFTYKVRYTNSSTEIPEFPIAP 82 (97)
T ss_dssp EEEECTTCCEEEEEHHH-HTTSHHHHHHHCCC--------CEEECTTSCHHHHHHHHHHHHHHHHHTTCCSCCCCCCCCG
T ss_pred EEEEecCCcEEEecHHH-HHHhHHHHHHHHhCCCccccCCCceECCCCCHHHHHHHHHHHHHhcccCCCcCCCCcCcCCH
Confidence 34444 68999999999 9999999999987 6778888899999999999999999999 5 6676 899
Q ss_pred hhHHHHHHHHHhhC
Q 005044 618 DIAQDLLRAADQYL 631 (717)
Q Consensus 618 ~~~~~ll~~A~~~~ 631 (717)
+++.+|+.+|++|+
T Consensus 83 ~~l~eLl~AAnyL~ 96 (97)
T 4ajy_C 83 EIALELLMAANFLD 96 (97)
T ss_dssp GGHHHHHHHHHHHT
T ss_pred HHHHHHHHHHhhhC
Confidence 99999999999986
No 85
>2vgl_A Adaptor protein complex AP-2, alpha 2 subunit; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Rattus norvegicus} PDB: 2xa7_A 2jkr_A 2jkt_A
Probab=99.08 E-value=4.3e-08 Score=107.50 Aligned_cols=353 Identities=17% Similarity=0.187 Sum_probs=235.2
Q ss_pred HHHHHHHHHHHhhc-ChhhHHHHHhCCChHHHHHhhcCCCCCccccCCCccchHHHhHHHHHHHHhcCChhhHHHHHhCC
Q 005044 79 AAKRATHVLAELAK-NEEVVNWIVEGGAVPALVKHLQAPPTSEADRNLKPFEHEVEKGSAFALGLLAVKPEHQQLIVDNG 157 (717)
Q Consensus 79 ~~~~a~~~L~~l~~-~~~~~~~~~~~g~i~~L~~lL~~~~~~~~~~~~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~ 157 (717)
.+..+.-.+..++. +++.... ++..+.+=|+++++ -+|..|+++|+++.. ++..+ .
T Consensus 90 ~Krl~YL~l~~~~~~~~e~~~L-----~iN~l~kDl~~~n~------------~ir~lALr~L~~i~~-~e~~~-----~ 146 (621)
T 2vgl_A 90 EKQIGYLFISVLVNSNSELIRL-----INNAIKNDLASRNP------------TFMGLALHCIANVGS-REMAE-----A 146 (621)
T ss_dssp HHHHHHHHHHHSCCCCHHHHHH-----HHHHHHHHHHSCCH------------HHHHHHHHHHHHHCC-HHHHH-----H
T ss_pred HHHHHHHHHHHHccCCcHHHHH-----HHHHHHHhcCCCCH------------HHHHHHHHHhhccCC-HHHHH-----H
Confidence 34555555555555 3433222 24556666666555 899999999999964 44322 3
Q ss_pred ChHHHHHHH--hccccCCCccchhHHHHHHHHHHHHHhhcCchhhhHHHhcCCcHHHHHhhcCCCHHHHHHHHHHHHHhh
Q 005044 158 ALSHLVNLL--KRHMDSNCSRAVNSVIRRAADAITNLAHENSSIKTRVRMEGGIPPLVELLEFTDTKVQRAAAGALRTLA 235 (717)
Q Consensus 158 ~i~~L~~lL--~~~~~~~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~L~ 235 (717)
.++.+.+.+ .+.++ .++..|+.++.++...+++.- ...+.++.+..+|.++++.++..|+.++..++
T Consensus 147 l~~~v~~~l~~~d~~~--------~VRK~A~~al~kl~~~~p~~~---~~~~~~~~l~~lL~d~d~~V~~~a~~~l~~i~ 215 (621)
T 2vgl_A 147 FAGEIPKILVAGDTMD--------SVKQSAALCLLRLYRTSPDLV---PMGDWTSRVVHLLNDQHLGVVTAATSLITTLA 215 (621)
T ss_dssp HTTHHHHHHHCSSSCH--------HHHHHHHHHHHHHHHHCGGGC---CCCSCHHHHHHHTTCSCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCCCCH--------HHHHHHHHHHHHHHHhChhhc---CchhHHHHHHHHhCCCCccHHHHHHHHHHHHH
Confidence 467788888 55544 899999999999998766432 12478899999999999999999999999998
Q ss_pred ccChhhHHHHHhcCCHHHHHHHHcCC-------------CHHHHHHHHHHHHHhhcC-ChHHHHHHHHcCChHHHHHhhc
Q 005044 236 FKNDENKNQIVECNALPTLILMLRSE-------------DSAIHYEAVGVIGNLVHS-SPNIKKEVLAAGALQPVIGLLS 301 (717)
Q Consensus 236 ~~~~~~~~~~~~~g~i~~L~~ll~~~-------------~~~v~~~a~~~L~~l~~~-~~~~~~~~~~~g~l~~L~~ll~ 301 (717)
..++.....+.. ..+..|.+++..+ ++-.+...+..|..++.. ++.....+.+ .+..++..+.
T Consensus 216 ~~~~~~~~~~~~-~~~~~L~~ll~~~~~~~~~~~~~~~~~~w~qi~il~ll~~~~~~~d~~~~~~l~~--~L~~il~~~~ 292 (621)
T 2vgl_A 216 QKNPEEFKTSVS-LAVSRLSRIVTSASTDLQDYTYYFVPAPWLSVKLLRLLQCYPPPEDPAVRGRLTE--CLETILNKAQ 292 (621)
T ss_dssp HHCHHHHTTHHH-HHHHHHHHHHHCCSSSCSTTEETTEESHHHHHHHHHHGGGSSSCSSHHHHHHHHH--HHHHHHHHHH
T ss_pred HhChHHHHHHHH-HHHHHHHHHHhCCCCCccchhhcCCCCchHHHHHHHHHHHhCCCCCHHHHHHHHH--HHHHHHHhhc
Confidence 755542111111 1233333444321 567888888888888753 3344333322 2333333221
Q ss_pred ---------cCC--hHHHHHHHHHHHHHhcCChhhHHHHHhcCChHHHHHHhcCCCHHHHHHHHHHHHHhhcCCCCchhh
Q 005044 302 ---------SCC--SESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQSPDVQLREMSAFALGRLAQDMHNQAGI 370 (717)
Q Consensus 302 ---------~~~--~~~~~~a~~~L~~l~~~~~~~~~~l~~~~~l~~L~~~l~~~~~~v~~~a~~~L~~l~~~~~~~~~l 370 (717)
+.+ ..+..+|+.++..+. ..+.... .++..|..++.++++.+|..++.+|..++...+.. ..
T Consensus 293 ~~~ks~~l~~~n~~~aVl~ea~~~i~~l~-~~~~~~~-----~~~~~L~~~L~~~~~niry~aL~~l~~l~~~~~~~-~~ 365 (621)
T 2vgl_A 293 EPPKSKKVQHSNAKNAVLFEAISLIIHHD-SEPNLLV-----RACNQLGQFLQHRETNLRYLALESMCTLASSEFSH-EA 365 (621)
T ss_dssp SCCSCSSHHHHHHHHHHHHHHHHHHHHHC-CCHHHHH-----HHHHHHHHHSSCSCHHHHHHHHHHHHHHTTCTTTH-HH
T ss_pred cCcccccccccchHHHHHHHHHHHHHhcC-CcHHHHH-----HHHHHHHHHhcCCCcchHHHHHHHHHHHHhccCcH-HH
Confidence 112 267778888888884 2333222 24677888898899999999999999998754321 22
Q ss_pred HhcCChHHHHHhhc-CCChhHHHHHHHHHHhccCCCcchHHHHHhcCccccccchhHHhhhHHHHHHHHHHHHHHhhhch
Q 005044 371 AHNGGLVPLLKLLD-SKNGSLQHNAAFALYGLADNEDNVADFIRVGGVQKLQDGEFIVQATKDCVAKTLKRLEEKIHGRV 449 (717)
Q Consensus 371 ~~~~~l~~L~~ll~-~~~~~v~~~a~~~L~~l~~~~~~~~~l~~~~~i~~L~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 449 (717)
+ ......++..+. +++..++..++.+|..++.. .+.. .+
T Consensus 366 ~-~~~~~~i~~~L~~d~d~~Ir~~aL~lL~~l~~~-~Nv~--------------------------------------~I 405 (621)
T 2vgl_A 366 V-KTHIETVINALKTERDVSVRQRAVDLLYAMCDR-SNAQ--------------------------------------QI 405 (621)
T ss_dssp H-HTTHHHHHHHHTTCCCHHHHHHHHHHHHHHCCH-HHHH--------------------------------------HH
T ss_pred H-HHHHHHHHHHhccCCCHhHHHHHHHHHHHHcCh-hhHH--------------------------------------HH
Confidence 2 334666788888 89999999999999999843 2322 15
Q ss_pred HHHHHHHHhhcchhHHHHHHHHHHhccCCCCCceeeecCCCHHHHHHHhcCCCchhhhhhHHHHHHhhhc
Q 005044 450 LNHLLYLMRVAEKGVQRRVALALAHLCSPDDQRTIFIDGGGLELLLGLLGSTNPKQQLDGAVALFKLANK 519 (717)
Q Consensus 450 ~~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~~~~~~l~~L~~ll~~~~~~v~~~a~~~l~~L~~~ 519 (717)
+..|...+...+.+++..++.+++.++..-.. .....+..|++++......+...++..+.++...
T Consensus 406 v~eL~~yl~~~d~~~~~~~v~~I~~la~k~~~----~~~~~v~~Ll~ll~~~~~~v~~ev~~~l~~ii~~ 471 (621)
T 2vgl_A 406 VAEMLSYLETADYSIREEIVLKVAILAEKYAV----DYTWYVDTILNLIRIAGDYVSEEVWYRVIQIVIN 471 (621)
T ss_dssp HHHHHHHHHHCCHHHHHHHHHHHHHHHHHHCS----STHHHHHHHHHHHHHHGGGSCSHHHHHHHHHHGG
T ss_pred HHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCC----cHHHHHHHHHHHHHhhcccchHHHHHHHHHHHhC
Confidence 66688888888999999999999988643110 1234578888888876666777777777777754
No 86
>2vgl_A Adaptor protein complex AP-2, alpha 2 subunit; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Rattus norvegicus} PDB: 2xa7_A 2jkr_A 2jkt_A
Probab=99.01 E-value=1.4e-07 Score=103.53 Aligned_cols=332 Identities=14% Similarity=0.124 Sum_probs=224.6
Q ss_pred CChHHHHHhhcCCCCCccccCCCccchHHHhHHHHHHHHhc-CChhhHHHHHhCCChHHHHHHHhccccCCCccchhHHH
Q 005044 104 GAVPALVKHLQAPPTSEADRNLKPFEHEVEKGSAFALGLLA-VKPEHQQLIVDNGALSHLVNLLKRHMDSNCSRAVNSVI 182 (717)
Q Consensus 104 g~i~~L~~lL~~~~~~~~~~~~~~~~~~v~~~a~~~L~~l~-~~~~~~~~~~~~~~i~~L~~lL~~~~~~~~~~~~~~~~ 182 (717)
.+.+..++++.+++. ..++.+--.+..++ .+++.... ++..+.+=|.+.++ .++
T Consensus 74 ~~~~~vvkl~~s~~~------------~~Krl~YL~l~~~~~~~~e~~~L-----~iN~l~kDl~~~n~--------~ir 128 (621)
T 2vgl_A 74 FGHMEAVNLLSSNRY------------TEKQIGYLFISVLVNSNSELIRL-----INNAIKNDLASRNP--------TFM 128 (621)
T ss_dssp SCHHHHHHGGGCSCH------------HHHHHHHHHHHHSCCCCHHHHHH-----HHHHHHHHHHSCCH--------HHH
T ss_pred hhHHHHHHHhcCCCH------------HHHHHHHHHHHHHccCCcHHHHH-----HHHHHHHhcCCCCH--------HHH
Confidence 356777888887766 89999999999998 55554211 13445555555444 788
Q ss_pred HHHHHHHHHHhhcCchhhhHHHhcCCcHHHHHhh--cCCCHHHHHHHHHHHHHhhccChhhHHHHHhcCCHHHHHHHHcC
Q 005044 183 RRAADAITNLAHENSSIKTRVRMEGGIPPLVELL--EFTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRS 260 (717)
Q Consensus 183 ~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll--~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~g~i~~L~~ll~~ 260 (717)
..|+++|+++.. ++.. ...++.+.+++ .+.++.||..|+.++..+...+++... ..+.++.+.++|.+
T Consensus 129 ~lALr~L~~i~~--~e~~-----~~l~~~v~~~l~~~d~~~~VRK~A~~al~kl~~~~p~~~~---~~~~~~~l~~lL~d 198 (621)
T 2vgl_A 129 GLALHCIANVGS--REMA-----EAFAGEIPKILVAGDTMDSVKQSAALCLLRLYRTSPDLVP---MGDWTSRVVHLLND 198 (621)
T ss_dssp HHHHHHHHHHCC--HHHH-----HHHTTHHHHHHHCSSSCHHHHHHHHHHHHHHHHHCGGGCC---CCSCHHHHHHHTTC
T ss_pred HHHHHHhhccCC--HHHH-----HHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHhChhhcC---chhHHHHHHHHhCC
Confidence 899999999864 3322 24568889999 889999999999999999875554332 24789999999999
Q ss_pred CCHHHHHHHHHHHHHhhcCChHHHHHHHHcCChHHHHHhhccC-------------ChHHHHHHHHHHHHHhcC-ChhhH
Q 005044 261 EDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLSSC-------------CSESQREAALLLGQFAAT-DSDCK 326 (717)
Q Consensus 261 ~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~l~~L~~ll~~~-------------~~~~~~~a~~~L~~l~~~-~~~~~ 326 (717)
.++.|+..|+.++..++..++......+ ...+..|.+++... ++=.+......+..++.. ++...
T Consensus 199 ~d~~V~~~a~~~l~~i~~~~~~~~~~~~-~~~~~~L~~ll~~~~~~~~~~~~~~~~~~w~qi~il~ll~~~~~~~d~~~~ 277 (621)
T 2vgl_A 199 QHLGVVTAATSLITTLAQKNPEEFKTSV-SLAVSRLSRIVTSASTDLQDYTYYFVPAPWLSVKLLRLLQCYPPPEDPAVR 277 (621)
T ss_dssp SCHHHHHHHHHHHHHHHHHCHHHHTTHH-HHHHHHHHHHHHCCSSSCSTTEETTEESHHHHHHHHHHGGGSSSCSSHHHH
T ss_pred CCccHHHHHHHHHHHHHHhChHHHHHHH-HHHHHHHHHHHhCCCCCccchhhcCCCCchHHHHHHHHHHHhCCCCCHHHH
Confidence 9999999999999999876553211100 11223333443321 344666666777776542 23333
Q ss_pred HHHHhcCChHHHHHHhcC-C--------CH--HHHHHHHHHHHHhhcCCCCchhhHhcCChHHHHHhhcCCChhHHHHHH
Q 005044 327 VHIVQRGAVRPLIEMLQS-P--------DV--QLREMSAFALGRLAQDMHNQAGIAHNGGLVPLLKLLDSKNGSLQHNAA 395 (717)
Q Consensus 327 ~~l~~~~~l~~L~~~l~~-~--------~~--~v~~~a~~~L~~l~~~~~~~~~l~~~~~l~~L~~ll~~~~~~v~~~a~ 395 (717)
..+.+ ++..++..+.+ + +. .+..+++.++..+... ..+. ..++..|..++.+.++.++..++
T Consensus 278 ~~l~~--~L~~il~~~~~~~ks~~l~~~n~~~aVl~ea~~~i~~l~~~----~~~~-~~~~~~L~~~L~~~~~niry~aL 350 (621)
T 2vgl_A 278 GRLTE--CLETILNKAQEPPKSKKVQHSNAKNAVLFEAISLIIHHDSE----PNLL-VRACNQLGQFLQHRETNLRYLAL 350 (621)
T ss_dssp HHHHH--HHHHHHHHHHSCCSCSSHHHHHHHHHHHHHHHHHHHHHCCC----HHHH-HHHHHHHHHHSSCSCHHHHHHHH
T ss_pred HHHHH--HHHHHHHhhccCcccccccccchHHHHHHHHHHHHHhcCCc----HHHH-HHHHHHHHHHhcCCCcchHHHHH
Confidence 33322 34444433311 1 22 6777888888887521 1222 23566788888889999999999
Q ss_pred HHHHhccCCCcchHHHHHhcCccccccchhHHhhhHHHHHHHHHHHHHHhhhchHHHHHHHHh-hcchhHHHHHHHHHHh
Q 005044 396 FALYGLADNEDNVADFIRVGGVQKLQDGEFIVQATKDCVAKTLKRLEEKIHGRVLNHLLYLMR-VAEKGVQRRVALALAH 474 (717)
Q Consensus 396 ~~L~~l~~~~~~~~~l~~~~~i~~L~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~L~~ll~-~~~~~v~~~a~~aL~~ 474 (717)
..|..++...+....+. .....++..+. ++++.++..++..|..
T Consensus 351 ~~l~~l~~~~~~~~~~~-----------------------------------~~~~~i~~~L~~d~d~~Ir~~aL~lL~~ 395 (621)
T 2vgl_A 351 ESMCTLASSEFSHEAVK-----------------------------------THIETVINALKTERDVSVRQRAVDLLYA 395 (621)
T ss_dssp HHHHHHTTCTTTHHHHH-----------------------------------TTHHHHHHHHTTCCCHHHHHHHHHHHHH
T ss_pred HHHHHHHhccCcHHHHH-----------------------------------HHHHHHHHHhccCCCHhHHHHHHHHHHH
Confidence 99999986542211111 13456778888 8999999999999999
Q ss_pred ccCCCCCceeeecCCCHHHHHHHhcCCCchhhhhhHHHHHHhhhc
Q 005044 475 LCSPDDQRTIFIDGGGLELLLGLLGSTNPKQQLDGAVALFKLANK 519 (717)
Q Consensus 475 l~~~~~~~~~~~~~~~l~~L~~ll~~~~~~v~~~a~~~l~~L~~~ 519 (717)
++..... ...+..|...+.+.+.+.+..++.++..++..
T Consensus 396 l~~~~Nv------~~Iv~eL~~yl~~~d~~~~~~~v~~I~~la~k 434 (621)
T 2vgl_A 396 MCDRSNA------QQIVAEMLSYLETADYSIREEIVLKVAILAEK 434 (621)
T ss_dssp HCCHHHH------HHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHH
T ss_pred HcChhhH------HHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHh
Confidence 9765321 23466777778888899999999999998864
No 87
>1fs1_B SKP1, cyclin A/CDK2-associated P45; F-BOX, LRR, leucine-rich repeat, SCF, ubiquitin, ubiquitin protein ligase; 1.80A {Homo sapiens} SCOP: a.157.1.1 d.42.1.1 PDB: 1fs2_B 1ldk_D
Probab=98.95 E-value=1.9e-09 Score=92.44 Aligned_cols=100 Identities=15% Similarity=0.209 Sum_probs=84.2
Q ss_pred EEEEE-cCeEeehhHHHHhhccHHHHHhhcCCCCCCCCcceEcCCCCHHHHHHHHHHHhcCc------------------
Q 005044 552 VTFLV-EGRRFYAHRICLLASSDAFRAMFDGGYREKDARDIEIPNIRWEVFELMMRFIYTGS------------------ 612 (717)
Q Consensus 552 v~~~~-~~~~~~~h~~il~~~s~~f~~~~~~~~~e~~~~~i~l~~~~~~~~~~~l~~~Yt~~------------------ 612 (717)
|++.. +|..|.+|+.+ +..|++|+.||.+. + ...|++++++..+++.+++|+|...
T Consensus 4 v~L~SsDg~~f~v~~~v-A~~S~~ik~ml~~~---~-~~~Ipl~~V~~~iL~kVieyc~~h~~~~~~~~~~~~~~~~~~~ 78 (141)
T 1fs1_B 4 IKLQSSDGEIFEVDVEI-AKQSVTIKTMLEDL---G-MDPVPLPNVNAAILKKVIQWCTHHKDDPPPPEDDENKEKRTDD 78 (141)
T ss_dssp EEEECTTSCEEEEEGGG-GGTCHHHHHHHHHT---C-CSSEECTTCCHHHHHHHHHHHHHHTTCC---------------
T ss_pred EEEEeCCCCEEEecHHH-HHHhHHHHHHHHhc---C-CCceecCCcCHHHHHHHHHHHHHhccCCCccccccccccchhh
Confidence 55555 67999999998 88999999999753 1 4589999999999999999999765
Q ss_pred --------cccchhhHHHHHHHHHhhChHhHHHHHHHHHHhcCChhcHHHHH
Q 005044 613 --------VDVTLDIAQDLLRAADQYLLEGLKRLCEYTIAQDISLENVSSMY 656 (717)
Q Consensus 613 --------~~~~~~~~~~ll~~A~~~~~~~l~~~c~~~l~~~i~~~n~~~~~ 656 (717)
+.++.+++.+|+.+|+++++..|.+.|..++...+.-.+..++.
T Consensus 79 i~~wD~~F~~vd~~~l~eLi~AAnyL~I~~Lldl~c~~vA~~ikgkt~eeiR 130 (141)
T 1fs1_B 79 IPVWDQEFLKVDQGTLFELILAANYLDIKGLLDVTCKTVANMIKGKTPEEIR 130 (141)
T ss_dssp --HHHHHHTCSCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTCCHHHHH
T ss_pred hhHHHHHHHhCCHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHcCCCHHHHH
Confidence 56788899999999999999999999999998877655554443
No 88
>4gmo_A Putative uncharacterized protein; ARM, heat, solenoid, nuclear transport, chaperone, RPL5, RPL KAP104, nucleus; 2.10A {Chaetomium thermophilum var} PDB: 4gmn_A
Probab=98.93 E-value=5.5e-09 Score=116.26 Aligned_cols=188 Identities=16% Similarity=0.129 Sum_probs=146.7
Q ss_pred HHHHHHHHHHHHHhhcChhhHHHHHhCCChHHH-HHhhcCCCCCccccCCCccchHHHhHHHHHHHHhc--CChhhHHHH
Q 005044 77 RAAAKRATHVLAELAKNEEVVNWIVEGGAVPAL-VKHLQAPPTSEADRNLKPFEHEVEKGSAFALGLLA--VKPEHQQLI 153 (717)
Q Consensus 77 ~~~~~~a~~~L~~l~~~~~~~~~~~~~g~i~~L-~~lL~~~~~~~~~~~~~~~~~~v~~~a~~~L~~l~--~~~~~~~~~ 153 (717)
...|..|+++|.+++.++..+..+...|++..+ ..+|.+++. +||..|+++|.||+ .+++....+
T Consensus 48 ~~~r~~A~~al~~l~~~~~~~~l~~~~~~v~~ll~~lL~D~~~------------~Vr~~A~gaLrnL~~~~g~d~~~~l 115 (684)
T 4gmo_A 48 AKSRTTAAGAIANIVQDAKCRKLLLREQVVHIVLTETLTDNNI------------DSRAAGWEILKVLAQEEEADFCVHL 115 (684)
T ss_dssp CSHHHHHHHHHHHHTTSHHHHHHHHHTTHHHHHHHTTTTCSCH------------HHHHHHHHHHHHHHHHSCHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCcHHHHHHHHcCCHHHHHHHHcCCCCH------------HHHHHHHHHHHHHHhhcCchHHHHH
Confidence 335999999999999999999999999998765 456776666 99999999999999 678999999
Q ss_pred HhCCChHHHHHHHhccccCC---------C----ccchhHHHHHHHHHHHHHhhcCchhhhHHHhcCCcHHHHHhhcC--
Q 005044 154 VDNGALSHLVNLLKRHMDSN---------C----SRAVNSVIRRAADAITNLAHENSSIKTRVRMEGGIPPLVELLEF-- 218 (717)
Q Consensus 154 ~~~~~i~~L~~lL~~~~~~~---------~----~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~-- 218 (717)
...|+++.|..+++...... . ....+++...++.+|++||..+......+...++++.|+..|.+
T Consensus 116 ~~~~il~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~lL~~L~e~s~~~~~~v~~~~~l~~l~~~L~~~~ 195 (684)
T 4gmo_A 116 YRLDVLTAIEHAAKAVLETLTTSEPPFSKLLKAQQRLVWDITGSLLVLIGLLALARDEIHEAVATKQTILRLLFRLISAD 195 (684)
T ss_dssp HHTTHHHHHHHHHHHHHHHHHCBTTBGGGSCHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHTCHHHHHHHHHHHHHC
T ss_pred HHcChHHHHHHHHHhhHHHHhhhccccccccHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHhcccHHHHHHHHHhcC
Confidence 99999999999986532100 0 01123456678899999999888877788888899999998844
Q ss_pred -CCHHHHHHHHHHHHHhhccChhhHHHHHhcCCHH---HHHHHHcCCCHHHHHHHHHHHHHhh
Q 005044 219 -TDTKVQRAAAGALRTLAFKNDENKNQIVECNALP---TLILMLRSEDSAIHYEAVGVIGNLV 277 (717)
Q Consensus 219 -~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~g~i~---~L~~ll~~~~~~v~~~a~~~L~~l~ 277 (717)
...+++..|+.+|..++.++++....+.+.+... .+..+.++. ...+..++++|.|+.
T Consensus 196 ~~~~~v~~~a~~~L~~ls~dn~~~~~~i~~~~~~~~~~~ll~~~~~~-~~~~~la~giL~Ni~ 257 (684)
T 4gmo_A 196 IAPQDIYEEAISCLTTLSEDNLKVGQAITDDQETHVYDVLLKLATGT-DPRAVMACGVLHNVF 257 (684)
T ss_dssp CSCHHHHHHHHHHHHHHHTTCHHHHHHHHTCCSSCHHHHHHHHHHSS-CTTHHHHHHHHHHHH
T ss_pred CCcHHHHHHHHHHHHHHhccCHHHHHHHHhcchHHHHHHHHHHhcCC-cHHHHHHHHHHHhHh
Confidence 3478999999999999998888888888776533 333333343 345778889999874
No 89
>4gmo_A Putative uncharacterized protein; ARM, heat, solenoid, nuclear transport, chaperone, RPL5, RPL KAP104, nucleus; 2.10A {Chaetomium thermophilum var} PDB: 4gmn_A
Probab=98.86 E-value=1.7e-08 Score=112.31 Aligned_cols=194 Identities=13% Similarity=0.120 Sum_probs=152.7
Q ss_pred hHHHHHhhcCCCCCccccCCCccchHHHhHHHHHHHHhcCChhhHHHHHhCCChHHHHH-HHhccccCCCccchhHHHHH
Q 005044 106 VPALVKHLQAPPTSEADRNLKPFEHEVEKGSAFALGLLAVKPEHQQLIVDNGALSHLVN-LLKRHMDSNCSRAVNSVIRR 184 (717)
Q Consensus 106 i~~L~~lL~~~~~~~~~~~~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~i~~L~~-lL~~~~~~~~~~~~~~~~~~ 184 (717)
+..+++.|++++. ..|..|+++|++|+.++..+..+...+++..++. +|.+.+. +++..
T Consensus 36 i~Pll~~L~S~~~------------~~r~~A~~al~~l~~~~~~~~l~~~~~~v~~ll~~lL~D~~~--------~Vr~~ 95 (684)
T 4gmo_A 36 ILPVLKDLKSPDA------------KSRTTAAGAIANIVQDAKCRKLLLREQVVHIVLTETLTDNNI--------DSRAA 95 (684)
T ss_dssp THHHHHHHSSSCC------------SHHHHHHHHHHHHTTSHHHHHHHHHTTHHHHHHHTTTTCSCH--------HHHHH
T ss_pred HHHHHHHcCCCCH------------HHHHHHHHHHHHHHcCcHHHHHHHHcCCHHHHHHHHcCCCCH--------HHHHH
Confidence 4446677888777 8999999999999999999999999999987655 5666555 99999
Q ss_pred HHHHHHHHhhc-CchhhhHHHhcCCcHHHHHhhcCCC---------------------HHHHHHHHHHHHHhhccChhhH
Q 005044 185 AADAITNLAHE-NSSIKTRVRMEGGIPPLVELLEFTD---------------------TKVQRAAAGALRTLAFKNDENK 242 (717)
Q Consensus 185 a~~~L~~l~~~-~~~~~~~~~~~~~i~~L~~ll~~~~---------------------~~v~~~a~~~L~~L~~~~~~~~ 242 (717)
|+++|.||+.. .+.....+...|+++.|..+++... ..+...++.+|++|+..+.+..
T Consensus 96 A~gaLrnL~~~~g~d~~~~l~~~~il~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~lL~~L~e~s~~~~ 175 (684)
T 4gmo_A 96 GWEILKVLAQEEEADFCVHLYRLDVLTAIEHAAKAVLETLTTSEPPFSKLLKAQQRLVWDITGSLLVLIGLLALARDEIH 175 (684)
T ss_dssp HHHHHHHHHHHSCHHHHHHHHHTTHHHHHHHHHHHHHHHHHCBTTBGGGSCHHHHHHHHHHHHHHHHHHHHHHHHCHHHH
T ss_pred HHHHHHHHHhhcCchHHHHHHHcChHHHHHHHHHhhHHHHhhhccccccccHHHHHHHHHHHHHHHHHHHHHHhCCHHHH
Confidence 99999999975 4677788889999999998875310 2345568889999998788888
Q ss_pred HHHHhcCCHHHHHHHHcCC---CHHHHHHHHHHHHHhhcCChHHHHHHHHcCChHHHHHhh--ccCChHHHHHHHHHHHH
Q 005044 243 NQIVECNALPTLILMLRSE---DSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLL--SSCCSESQREAALLLGQ 317 (717)
Q Consensus 243 ~~~~~~g~i~~L~~ll~~~---~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~l~~L~~ll--~~~~~~~~~~a~~~L~~ 317 (717)
..+...++++.|+.+|.+. ..+++..|+.+|..++..++...+.+.+.+....+..++ .......+..+++++.|
T Consensus 176 ~~v~~~~~l~~l~~~L~~~~~~~~~v~~~a~~~L~~ls~dn~~~~~~i~~~~~~~~~~~ll~~~~~~~~~~~la~giL~N 255 (684)
T 4gmo_A 176 EAVATKQTILRLLFRLISADIAPQDIYEEAISCLTTLSEDNLKVGQAITDDQETHVYDVLLKLATGTDPRAVMACGVLHN 255 (684)
T ss_dssp HHHHTCHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHTTCHHHHHHHHTCCSSCHHHHHHHHHHSSCTTHHHHHHHHHH
T ss_pred HHHHhcccHHHHHHHHHhcCCCcHHHHHHHHHHHHHHhccCHHHHHHHHhcchHHHHHHHHHHhcCCcHHHHHHHHHHHh
Confidence 8888889999999988542 468999999999999999988888888776543332222 23344457778889998
Q ss_pred Hh
Q 005044 318 FA 319 (717)
Q Consensus 318 l~ 319 (717)
+.
T Consensus 256 i~ 257 (684)
T 4gmo_A 256 VF 257 (684)
T ss_dssp HH
T ss_pred Hh
Confidence 74
No 90
>2p1m_A SKP1-like protein 1A; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_A* 2p1o_A* 2p1p_A* 2p1q_A* 3c6n_A* 3c6o_A* 3c6p_A* 3ogk_A* 3ogl_A* 3ogm_A*
Probab=98.77 E-value=3.1e-09 Score=93.36 Aligned_cols=105 Identities=14% Similarity=0.274 Sum_probs=58.8
Q ss_pred EEEEE-cCeEeehhHHHHhhccHHHHHhhcCCCCCCCCcceEcCCCCHHHHHHHHHHHhcCc------------------
Q 005044 552 VTFLV-EGRRFYAHRICLLASSDAFRAMFDGGYREKDARDIEIPNIRWEVFELMMRFIYTGS------------------ 612 (717)
Q Consensus 552 v~~~~-~~~~~~~h~~il~~~s~~f~~~~~~~~~e~~~~~i~l~~~~~~~~~~~l~~~Yt~~------------------ 612 (717)
|++.. +|..|.+|+.+ +..|++|+.||.+.. ....|++++++..+++.+++|+|...
T Consensus 6 v~L~SsDg~~f~v~~~v-A~~S~~ik~ml~~~~---~~~~Ipl~~V~~~iL~kVieyc~~h~~~~~~~~~~~~~~~~~~~ 81 (160)
T 2p1m_A 6 IVLKSSDGESFEVEEAV-ALESQTIAHMVEDDC---VDNGVPLPNVTSKILAKVIEYCKRHVEAAASKAEAVEGAATSDD 81 (160)
T ss_dssp --CCC---------CHH-HHTCTTTC---------------CCTTSCHHHHHHHHHC-----------------------
T ss_pred EEEEcCCCCEEEECHHH-HHHhHHHHHHHHccC---CCCceeCCcCcHHHHHHHHHHHHHcccCCCcccccccccccccc
Confidence 44444 68999999998 789999999998642 34589999999999999999999875
Q ss_pred ---------cccchhhHHHHHHHHHhhChHhHHHHHHHHHHhcC---ChhcHHHHHHHHH
Q 005044 613 ---------VDVTLDIAQDLLRAADQYLLEGLKRLCEYTIAQDI---SLENVSSMYELSE 660 (717)
Q Consensus 613 ---------~~~~~~~~~~ll~~A~~~~~~~l~~~c~~~l~~~i---~~~n~~~~~~~a~ 660 (717)
+.++.+++.+|+.+|+++++..|.+.|..++...+ +++.+..++.+..
T Consensus 82 ~i~~wD~~Fl~vd~~~l~eLi~AAnyL~I~~Lldl~c~~vA~~ikgkt~eeir~~f~I~n 141 (160)
T 2p1m_A 82 DLKAWDADFMKIDQATLFELILAANYLNIKNLLDLTCQTVADMIKGKTPEEIRTTFNIKN 141 (160)
T ss_dssp -------------------CHHHHHHTTCHHHHHHHHHHHHHTTTTCCHHHHHHHTTCCC
T ss_pred hhhHHHHHHHcCCHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCCCHHHHHHHcCCCC
Confidence 35677889999999999999999999999999988 5666555555443
No 91
>2db0_A 253AA long hypothetical protein; heat repeats, helical structure, structural genomics; 2.20A {Pyrococcus horikoshii}
Probab=98.73 E-value=5.6e-06 Score=70.90 Aligned_cols=215 Identities=19% Similarity=0.190 Sum_probs=168.3
Q ss_pred CCChHHHHHhhcCCCCCccccCCCccchHHHhHHHHHHHHhc-CChhhHHHHHhCCChHHHHHHHhccccCCCccchhHH
Q 005044 103 GGAVPALVKHLQAPPTSEADRNLKPFEHEVEKGSAFALGLLA-VKPEHQQLIVDNGALSHLVNLLKRHMDSNCSRAVNSV 181 (717)
Q Consensus 103 ~g~i~~L~~lL~~~~~~~~~~~~~~~~~~v~~~a~~~L~~l~-~~~~~~~~~~~~~~i~~L~~lL~~~~~~~~~~~~~~~ 181 (717)
...+..++.+|.++-. .|+..|+..+..++ .-|+..+.+ +..|+.+++.+..- .+
T Consensus 31 ~~~l~~lI~~LDDDlw------------tV~kNAl~vi~~i~~~~~el~epl-----~~kL~vm~~ksEaI-------pl 86 (253)
T 2db0_A 31 ESVLKKLIELLDDDLW------------TVVKNAISIIMVIAKTREDLYEPM-----LKKLFSLLKKSEAI-------PL 86 (253)
T ss_dssp HHHHHHHHHHTTCSCH------------HHHHHHHHHHHHHHTTCGGGHHHH-----HHHHHHHHHHCCSH-------HH
T ss_pred HHHHHHHHHHhccHHH------------HHHHhHHHHHHHHHHHhHHHHHHH-----HHHHHHHHhhcccC-------ch
Confidence 3467888899877654 89999999999999 777765433 46677777766542 56
Q ss_pred HHHHHHHHHHHhhcCchhhhHHHhcCCcHHHHHhhcCCCHHHHHHHHHHHHHhhccChhhHHHHHhcCCHHHHHHHHcCC
Q 005044 182 IRRAADAITNLAHENSSIKTRVRMEGGIPPLVELLEFTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSE 261 (717)
Q Consensus 182 ~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~g~i~~L~~ll~~~ 261 (717)
.......++.++...|+.-. +.+|.+..-.+-.++.++.....+|..++..+|.....+ +.-+..++.++
T Consensus 87 tqeIa~a~G~la~i~Pe~v~-----~vVp~lfanyrigd~kikIn~~yaLeeIaranP~l~~~v-----~rdi~smltsk 156 (253)
T 2db0_A 87 TQEIAKAFGQMAKEKPELVK-----SMIPVLFANYRIGDEKTKINVSYALEEIAKANPMLMASI-----VRDFMSMLSSK 156 (253)
T ss_dssp HHHHHHHHHHHHHHCHHHHH-----HHHHHHHHHSCCCSHHHHHHHHHHHHHHHHHCHHHHHHH-----HHHHHHHTSCS
T ss_pred HHHHHHHHhHHHHhCHHHHH-----hhHHHHHHHHhcCCccceecHHHHHHHHHHhChHHHHHH-----HHHHHHHhcCC
Confidence 56778899999987775432 356788887778899999999999999998777765444 45588899999
Q ss_pred CHHHHHHHHHHHHHhhcCChHHHHHHHHcCChHHHHHhhccCChHHHHHHHHHHHHHhcCChhhHHHHHhcCChHHHHHH
Q 005044 262 DSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLSSCCSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEM 341 (717)
Q Consensus 262 ~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~l~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~l~~~~~l~~L~~~ 341 (717)
+..-+..|+..|+.+..+.... -...+|.|..+|.+.+.-+|..+..+|.+++..++..+..+ ...++-
T Consensus 157 d~~Dkl~aLnFi~alGen~~~y-----v~PfLprL~aLL~D~deiVRaSaVEtL~~lA~~npklRkii------~~kl~e 225 (253)
T 2db0_A 157 NREDKLTALNFIEAMGENSFKY-----VNPFLPRIINLLHDGDEIVRASAVEALVHLATLNDKLRKVV------IKRLEE 225 (253)
T ss_dssp SHHHHHHHHHHHHTCCTTTHHH-----HGGGHHHHHGGGGCSSHHHHHHHHHHHHHHHTSCHHHHHHH------HHHHHH
T ss_pred ChHHHHHHHHHHHHHhccCccc-----cCcchHHHHHHHcCcchhhhHHHHHHHHHHHHcCHHHHHHH------HHHHHH
Confidence 9888999999999986554332 24679999999999999999999999999998888866533 445666
Q ss_pred hcCCCHHHHHHHHHHHHHhhc
Q 005044 342 LQSPDVQLREMSAFALGRLAQ 362 (717)
Q Consensus 342 l~~~~~~v~~~a~~~L~~l~~ 362 (717)
+.+.+..+......+|+.++.
T Consensus 226 ~~D~S~lv~~~V~egL~rl~l 246 (253)
T 2db0_A 226 LNDTSSLVNKTVKEGISRLLL 246 (253)
T ss_dssp CCCSCHHHHHHHHHHHHHHHH
T ss_pred hcCcHHHHHHHHHHHHHHHHH
Confidence 788888888888888888764
No 92
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N
Probab=98.71 E-value=8.2e-06 Score=90.45 Aligned_cols=299 Identities=15% Similarity=0.115 Sum_probs=195.0
Q ss_pred hHHHhHHHHHHHHhcCChhhHHHHHhCCChHHHHHHHhccccCCCccchhHHHHHHHHHHHHHhhcCchhhhHHHhcCCc
Q 005044 130 HEVEKGSAFALGLLAVKPEHQQLIVDNGALSHLVNLLKRHMDSNCSRAVNSVIRRAADAITNLAHENSSIKTRVRMEGGI 209 (717)
Q Consensus 130 ~~v~~~a~~~L~~l~~~~~~~~~~~~~~~i~~L~~lL~~~~~~~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i 209 (717)
+.++..|+..|+.+..+... .++..|...|.+.+..........++..|+..|+-...+... . ..+
T Consensus 409 ~~ik~GAllaLGli~ag~~~-------~~~~lL~~~L~~~~~~~~~~~~~~ir~gAaLGLGla~~GS~~-e------ev~ 474 (963)
T 4ady_A 409 RFIKGGSLYGLGLIYAGFGR-------DTTDYLKNIIVENSGTSGDEDVDVLLHGASLGIGLAAMGSAN-I------EVY 474 (963)
T ss_dssp HHHHHHHHHHHHHHTTTTTH-------HHHHHHHHHHHHHSSCCSCHHHHHHHHHHHHHHHHHSTTCCC-H------HHH
T ss_pred HHHHHHHHHHHHHhcCCCcH-------HHHHHHHHHHcCccccccccccHHHHHHHHHHHHHHhcCCCC-H------HHH
Confidence 48999999999999833221 136778888876541000000015777788888876543321 1 135
Q ss_pred HHHHHhhcCCCHHHHHHHHHHHHHhhc--cChhhHHHHHhcCCHHHHHHHH-cCCCHHHHHHHHHHHHHhhcCChHHHHH
Q 005044 210 PPLVELLEFTDTKVQRAAAGALRTLAF--KNDENKNQIVECNALPTLILML-RSEDSAIHYEAVGVIGNLVHSSPNIKKE 286 (717)
Q Consensus 210 ~~L~~ll~~~~~~v~~~a~~~L~~L~~--~~~~~~~~~~~~g~i~~L~~ll-~~~~~~v~~~a~~~L~~l~~~~~~~~~~ 286 (717)
..|..++.+++..++..|+.+|..+-. ++.+ ++..|+..+ .+.+..+++.++..|+.+..+.++.
T Consensus 475 e~L~~~L~dd~~~~~~~AalALGli~vGTgn~~---------ai~~LL~~~~e~~~e~vrR~aalgLGll~~g~~e~--- 542 (963)
T 4ady_A 475 EALKEVLYNDSATSGEAAALGMGLCMLGTGKPE---------AIHDMFTYSQETQHGNITRGLAVGLALINYGRQEL--- 542 (963)
T ss_dssp HHHHHHHHTCCHHHHHHHHHHHHHHHTTCCCHH---------HHHHHHHHHHHCSCHHHHHHHHHHHHHHTTTCGGG---
T ss_pred HHHHHHHhcCCHHHHHHHHHHHhhhhcccCCHH---------HHHHHHHHHhccCcHHHHHHHHHHHHhhhCCChHH---
Confidence 678888888777777788888886632 2222 234444443 4567899999999999987766544
Q ss_pred HHHcCChHHHHHhhcc-CChHHHHHHHHHHHHHhcCChhhHHHHHhcCChHHHHHHh-cCCCHHHHHHHHHHHHHhhcCC
Q 005044 287 VLAAGALQPVIGLLSS-CCSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEML-QSPDVQLREMSAFALGRLAQDM 364 (717)
Q Consensus 287 ~~~~g~l~~L~~ll~~-~~~~~~~~a~~~L~~l~~~~~~~~~~l~~~~~l~~L~~~l-~~~~~~v~~~a~~~L~~l~~~~ 364 (717)
++.+++.|.. .++.+|..++.+++--..+.... ..++.|+..+ .+.+..+|..|+.+|+.++...
T Consensus 543 ------~~~li~~L~~~~dp~vRygaa~alglAyaGTGn~-------~aIq~LL~~~~~d~~d~VRraAViaLGlI~~g~ 609 (963)
T 4ady_A 543 ------ADDLITKMLASDESLLRYGGAFTIALAYAGTGNN-------SAVKRLLHVAVSDSNDDVRRAAVIALGFVLLRD 609 (963)
T ss_dssp ------GHHHHHHHHHCSCHHHHHHHHHHHHHHTTTSCCH-------HHHHHHHHHHHHCSCHHHHHHHHHHHHHHTSSS
T ss_pred ------HHHHHHHHHhCCCHHHHHHHHHHHHHHhcCCCCH-------HHHHHHHHHhccCCcHHHHHHHHHHHHhhccCC
Confidence 6667777654 66888888888776443332211 1345555555 4568889999999999987654
Q ss_pred CCchhhHhcCChHHHHHh-hcCCChhHHHHHHHHHHhccCCCcchHHHHHhcCccccccchhHHhhhHHHHHHHHHHHHH
Q 005044 365 HNQAGIAHNGGLVPLLKL-LDSKNGSLQHNAAFALYGLADNEDNVADFIRVGGVQKLQDGEFIVQATKDCVAKTLKRLEE 443 (717)
Q Consensus 365 ~~~~~l~~~~~l~~L~~l-l~~~~~~v~~~a~~~L~~l~~~~~~~~~l~~~~~i~~L~~~~~~~~~~~~~~~~~~~~l~~ 443 (717)
+ ..++.++.+ +++.++.+|..+..+|+.++.+..+.
T Consensus 610 ~--------e~v~rlv~~L~~~~d~~VR~gAalALGli~aGn~~~----------------------------------- 646 (963)
T 4ady_A 610 Y--------TTVPRIVQLLSKSHNAHVRCGTAFALGIACAGKGLQ----------------------------------- 646 (963)
T ss_dssp C--------SSHHHHTTTGGGCSCHHHHHHHHHHHHHHTSSSCCH-----------------------------------
T ss_pred H--------HHHHHHHHHHHhcCCHHHHHHHHHHHHHhccCCCcH-----------------------------------
Confidence 3 245666664 46789999999999999997654331
Q ss_pred HhhhchHHHHHHHHhhcchhHHHHHHHHHHhccCCCCCceeeecCCCHHHHHHHhcC--CCchhhhhhHHHHH
Q 005044 444 KIHGRVLNHLLYLMRVAEKGVQRRVALALAHLCSPDDQRTIFIDGGGLELLLGLLGS--TNPKQQLDGAVALF 514 (717)
Q Consensus 444 ~~~~~~~~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~~~~~~l~~L~~ll~~--~~~~v~~~a~~~l~ 514 (717)
.++..|..++++++..|+..|+.+|+.+..+..+...-.-.+.+..|.....+ .++..+.-+..+..
T Consensus 647 ----~aid~L~~L~~D~d~~Vrq~Ai~ALG~Ig~gtnna~~~rva~~l~~L~~~~~dk~~d~~~~fga~iAqG 715 (963)
T 4ady_A 647 ----SAIDVLDPLTKDPVDFVRQAAMIALSMILIQQTEKLNPQVADINKNFLSVITNKHQEGLAKFGACVAQG 715 (963)
T ss_dssp ----HHHHHHHHHHTCSSHHHHHHHHHHHHHHSTTCCTTTCTTHHHHHHHHHHHHHCSSSCHHHHHHHHHHHH
T ss_pred ----HHHHHHHHHccCCCHHHHHHHHHHHHHHhcCCccccchHHHHHHHHHHHHHhcccccHHHHHHHHHHHH
Confidence 15666888899999999999999999997664433110012345556666654 34556655555443
No 93
>3tjz_B Coatomer subunit gamma; protein trafficking, golgi membrane, protein transport-prote binding complex; HET: GNP; 2.90A {Bos taurus}
Probab=98.69 E-value=5.4e-07 Score=89.61 Aligned_cols=278 Identities=13% Similarity=0.017 Sum_probs=158.4
Q ss_pred hHHHHHHHhccccCCCccchhHHHHHHHHHHHHHhhcCchhhhHHHhcCCcHHHHHhhcCCCHHHHHHHHHHHHHhhccC
Q 005044 159 LSHLVNLLKRHMDSNCSRAVNSVIRRAADAITNLAHENSSIKTRVRMEGGIPPLVELLEFTDTKVQRAAAGALRTLAFKN 238 (717)
Q Consensus 159 i~~L~~lL~~~~~~~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~L~~~~ 238 (717)
...+++++.+.+. ++++..--.+.+++...++ .+. ++..+.+=+.++++-+|..|+++|+++..
T Consensus 70 f~~v~kl~~s~d~--------~lKrLvYLyl~~~~~~~~e---~iL---v~Nsl~kDl~~~N~~iR~lALRtL~~I~~-- 133 (355)
T 3tjz_B 70 FFAMTKLFQSNDP--------TLRRMCYLTIKEMSCIAED---VII---VTSSLTKDMTGKEDSYRGPAVRALCQITD-- 133 (355)
T ss_dssp HHHHHGGGGCCCH--------HHHHHHHHHHHHHTTTSSC---GGG---GHHHHHHHHHSSCHHHHHHHHHHHHHHCC--
T ss_pred HHHHHHHhcCCCH--------HHHHHHHHHHHHhCCCHHH---HHH---HHHHHHhhcCCCcHhHHHHHHHHHhcCCC--
Confidence 4556667776655 7888877777777764322 222 46788888899999999999999999984
Q ss_pred hhhHHHHHhcCCHHHHHHHHcCCCHHHHHHHHHHHHHhhcCChHHHHHHHHcCChHHHHHhhccCChHHHHHHHHHHHHH
Q 005044 239 DENKNQIVECNALPTLILMLRSEDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLSSCCSESQREAALLLGQF 318 (717)
Q Consensus 239 ~~~~~~~~~~g~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~l~~L~~ll~~~~~~~~~~a~~~L~~l 318 (717)
++..+. +.+.+.+.+.+.++.|+..|+-+...+....++.. .++++.+.+++.+.++-+..+|..++..+
T Consensus 134 ~~m~~~-----l~~~lk~~L~d~~pyVRk~A~l~~~kL~~~~pe~v-----~~~~~~l~~ll~d~n~~V~~~Al~lL~ei 203 (355)
T 3tjz_B 134 STMLQA-----IERYMKQAIVDKVPSVSSSALVSSLHLLKCSFDVV-----KRWVNEAQEAASSDNIMVQYHALGLLYHV 203 (355)
T ss_dssp TTTHHH-----HHHHHHHHHTCSSHHHHHHHHHHHHHHTTTCHHHH-----HTTHHHHHHHTTCSSHHHHHHHHHHHHHH
T ss_pred HHHHHH-----HHHHHHHHcCCCCHHHHHHHHHHHHHHhccCHHHH-----HHHHHHHHHHhcCCCccHHHHHHHHHHHH
Confidence 443333 34668888999999999999999999987776542 36899999999999999999999999999
Q ss_pred hcCChhhHHHHHhcCChHHHHHHhcC---CCHHHHHHHHHHHHHhhcCCCCchhhHhcCChHHHHHhhcCCChhHHHHHH
Q 005044 319 AATDSDCKVHIVQRGAVRPLIEMLQS---PDVQLREMSAFALGRLAQDMHNQAGIAHNGGLVPLLKLLDSKNGSLQHNAA 395 (717)
Q Consensus 319 ~~~~~~~~~~l~~~~~l~~L~~~l~~---~~~~v~~~a~~~L~~l~~~~~~~~~l~~~~~l~~L~~ll~~~~~~v~~~a~ 395 (717)
...+.. .+..++..+.. .++-.+...+..+..++..++. -.....++.+...+++.++.|...|+
T Consensus 204 ~~~d~~---------a~~kLv~~l~~~~l~~~~~q~~llr~l~~~~~~d~~---~~~~~~~~~l~~~L~~~~~aVvyEa~ 271 (355)
T 3tjz_B 204 RKNDRL---------AVSKMISKFTRHGLKSPFAYCMMIRVASRQLEDEDG---SRDSPLFDFIESCLRNKHEMVVYEAA 271 (355)
T ss_dssp HTTCHH---------HHHHHHHHHHSSCCSCHHHHHHHHHHHTCC--------------------CCCCCSSHHHHHHHH
T ss_pred HhhchH---------HHHHHHHHHhcCCCcChHHHHHHHHHHHHhccccch---hhHHHHHHHHHHHHcCCChHHHHHHH
Confidence 754422 12334444433 2455555555555455443211 12234566677778899999999999
Q ss_pred HHHHhccCCCcchHHHHHhcCccccccchhHHhhhHHHHHHHHHHHHHHhhhchHHHHHHHHhhcchhHHHHHHHHHHhc
Q 005044 396 FALYGLADNEDNVADFIRVGGVQKLQDGEFIVQATKDCVAKTLKRLEEKIHGRVLNHLLYLMRVAEKGVQRRVALALAHL 475 (717)
Q Consensus 396 ~~L~~l~~~~~~~~~l~~~~~i~~L~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~L~~ll~~~~~~v~~~a~~aL~~l 475 (717)
.++..+...+.. ... .++..|..++.++++++|..|++.|..+
T Consensus 272 k~I~~l~~~~~~---~~~----------------------------------~a~~~L~~fLss~d~niryvaLr~L~~l 314 (355)
T 3tjz_B 272 SAIVNLPGCSAK---ELA----------------------------------PAVSVLQLFCSSPKAALRYAAVRTLNKV 314 (355)
T ss_dssp HHHTC------------------------------------------------CCCTHHHHHHSSSSSSHHHHHHCC---
T ss_pred HHHHhccCCCHH---HHH----------------------------------HHHHHHHHHHcCCCchHHHHHHHHHHHH
Confidence 999998652211 111 1334467788899999999999999988
Q ss_pred cCCCCCceeeecCCCHHHHHHHhcCCCchhhhhhHHHHHH
Q 005044 476 CSPDDQRTIFIDGGGLELLLGLLGSTNPKQQLDGAVALFK 515 (717)
Q Consensus 476 ~~~~~~~~~~~~~~~l~~L~~ll~~~~~~v~~~a~~~l~~ 515 (717)
.......- ...-..+.+++.++|..+...|...|..
T Consensus 315 ~~~~P~~v----~~~n~~ie~li~d~n~sI~t~Aittllk 350 (355)
T 3tjz_B 315 AMKHPSAV----TACNLDLENLVTDANRSIATLAITTLLK 350 (355)
T ss_dssp ----------------------------------------
T ss_pred HHHCcHHH----HHHHHHHHHHccCCcHhHHHHHHHHhhh
Confidence 76533211 1245678889999999888877766644
No 94
>3b2a_A TON_1937, putative uncharacterized protein; heat-repeats, hypothetical, unknown function; 2.20A {Thermococcus onnurineus}
Probab=98.61 E-value=8.4e-07 Score=79.62 Aligned_cols=189 Identities=15% Similarity=0.119 Sum_probs=147.9
Q ss_pred CCHHHHHHHHcCCCHHHHHHHHHHHHHhhcCChHHHHHHHHcCChHHHHHhhccCChHHHHHHHHHHHHHhcCChhhHHH
Q 005044 249 NALPTLILMLRSEDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLSSCCSESQREAALLLGQFAATDSDCKVH 328 (717)
Q Consensus 249 g~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~l~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~ 328 (717)
+.+..|..+|.+.|+.++..++.+|..+...-+.......-..+++.++.++.+.+..+...|..+|..+-.+.+-....
T Consensus 33 ~~l~~L~~LL~dkD~~vk~raL~~LeellK~~~~~l~~~~~e~~Ld~iI~llk~~dEkval~A~r~L~~LLe~vpL~~~~ 112 (265)
T 3b2a_A 33 RALFLILELAGEDDETTRLRAFVALGEILKRADSDLRMMVLERHLDVFINALSQENEKVTIKALRALGYLVKDVPMGSKT 112 (265)
T ss_dssp HHHHHHHHHTTSSCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTCCSTTHHHHHHHHHHHHHHHTTCCBCHHH
T ss_pred hHHHHHHHHHhccchHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHcCCCCCHHH
Confidence 35788999999999999999999999998764444455555678999999999999999999999999997665433333
Q ss_pred HHhcCChHHHHHHhcCCCHHHHHHHHHHHHHhhcCCCCchhhHhcCChHHHHHhhcCCChhHHHHHHHHHHhccCCCcch
Q 005044 329 IVQRGAVRPLIEMLQSPDVQLREMSAFALGRLAQDMHNQAGIAHNGGLVPLLKLLDSKNGSLQHNAAFALYGLADNEDNV 408 (717)
Q Consensus 329 l~~~~~l~~L~~~l~~~~~~v~~~a~~~L~~l~~~~~~~~~l~~~~~l~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~ 408 (717)
+. .+...+.+++.++++-++.+++..++.+--... ..+.+..+.+++.+.+..++..++.++.+++...++.
T Consensus 113 y~--Kl~~aL~dlik~~~~il~~eaae~Lgklkv~~~------~~~V~~~l~sLl~Skd~~vK~agl~~L~eia~~S~D~ 184 (265)
T 3b2a_A 113 FL--KAAKTLVSLLESPDDMMRIETIDVLSKLQPLED------SKLVRTYINELVVSPDLYTKVAGFCLFLNMLNSSADS 184 (265)
T ss_dssp HH--HHHHHHHHHTTSCCHHHHHHHHHHHHHCCBSCC------CHHHHHHHHHHHTCSSHHHHHHHHHHHHHHGGGCSSC
T ss_pred HH--HHHHHHHHHhcCCCchHHHHHHHHhCcCCcccc------hHHHHHHHHHHHhCCChhHHHHHHHHHHHhhcccCCH
Confidence 32 246788999999999999999999999922111 1234566888899999999999999999997644321
Q ss_pred HHHHHhcCccccccchhHHhhhHHHHHHHHHHHHHHhhhchHHHHHHHHhhcchhHHHHHHHHHHhccCCCC
Q 005044 409 ADFIRVGGVQKLQDGEFIVQATKDCVAKTLKRLEEKIHGRVLNHLLYLMRVAEKGVQRRVALALAHLCSPDD 480 (717)
Q Consensus 409 ~~l~~~~~i~~L~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~ 480 (717)
+.++ +++..+-.++.+.++.++..|+.+|..+.+.+-
T Consensus 185 ------~i~~-----------------------------~I~~eI~elL~~eD~~l~e~aLd~Le~ils~pi 221 (265)
T 3b2a_A 185 ------GHLT-----------------------------LILDEIPSLLQNDNEFIVELALDVLEKALSFPL 221 (265)
T ss_dssp ------CCGG-----------------------------GTTTTHHHHHTCSCHHHHHHHHHHHHHHTTSCC
T ss_pred ------HHHH-----------------------------HHHHHHHHHHcCCCHHHHHHHHHHHHHHHcCcc
Confidence 1111 255568889999999999999999999987753
No 95
>1ho8_A Vacuolar ATP synthase subunit H; heat repeat, hydrolase; 2.95A {Saccharomyces cerevisiae} SCOP: a.118.1.9
Probab=98.61 E-value=5e-06 Score=84.36 Aligned_cols=346 Identities=12% Similarity=0.142 Sum_probs=207.6
Q ss_pred CChHHHHHHHhccccCCCccchhHHHHHHHHHHHHHhhcCc---hhhhHHHhcCCc-HHHHH-hhcCCCHHHHHHHHHHH
Q 005044 157 GALSHLVNLLKRHMDSNCSRAVNSVIRRAADAITNLAHENS---SIKTRVRMEGGI-PPLVE-LLEFTDTKVQRAAAGAL 231 (717)
Q Consensus 157 ~~i~~L~~lL~~~~~~~~~~~~~~~~~~a~~~L~~l~~~~~---~~~~~~~~~~~i-~~L~~-ll~~~~~~v~~~a~~~L 231 (717)
.+...++++|+..... ++.++.+..+..+...++ ..-..+...... ..+.. .+..+++-....++.++
T Consensus 77 ~~~~~~l~lL~~~~~~-------d~vqYvL~Li~DlL~~~~~~~~~~~~f~~~~~~~~~l~~~~~~~dd~~~ll~a~~l~ 149 (480)
T 1ho8_A 77 KTLIPLIHLLSTSDNE-------DCKKSVQNLIAELLSSDKYGDDTVKFFQEDPKQLEQLFDVSLKGDFQTVLISGFNVV 149 (480)
T ss_dssp TTHHHHHHHHHSCCCH-------HHHHHHHHHHHHHHHCSSSSHHHHHHHHHCTTHHHHHHHHCSCSSHHHHHHHHHHHH
T ss_pred hHHHHHHHHHhhcChH-------HHHHHHHHHHHHHHhcCcchHHHHHHHhhCcccchHHHHHHhcccchHHHHHHHHHH
Confidence 4567788888876553 888888888888888665 322233332222 11222 33334455556666666
Q ss_pred HHhhccChhhHHHHHhcCCHH--HHHHHHcC-CCHHHHHHHHHHHHHhhcCChHHHHHHHHcC--ChHHHHHhhcc----
Q 005044 232 RTLAFKNDENKNQIVECNALP--TLILMLRS-EDSAIHYEAVGVIGNLVHSSPNIKKEVLAAG--ALQPVIGLLSS---- 302 (717)
Q Consensus 232 ~~L~~~~~~~~~~~~~~g~i~--~L~~ll~~-~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g--~l~~L~~ll~~---- 302 (717)
..++.......+.+- .++. .++..|.. ++.+.+.-++.+|..|... +..+..+.+.+ .++.++..+..
T Consensus 150 ~ll~~~~~~~~~~l~--~l~~~~~~~~~L~~~~~~~~~~i~v~~L~~Ll~~-~~~R~~f~~~~~~~~~~l~~il~~~~~~ 226 (480)
T 1ho8_A 150 SLLVQNGLHNVKLVE--KLLKNNNLINILQNIEQMDTCYVCIRLLQELAVI-PEYRDVIWLHEKKFMPTLFKILQRATDS 226 (480)
T ss_dssp HHHTSTTTCCHHHHH--HHHHCHHHHHHHHCTTCHHHHHHHHHHHHHHHTS-HHHHHHHHTTHHHHHHHHHHHHHHHHC-
T ss_pred HHHhccCCccHhHHH--HHhhhHHHHHHhccccCCchHHHHHHHHHHHhcc-hhHHHHHHHcccchhHHHHHHHHHhhcc
Confidence 666532222111111 1222 35555555 3455566788888888754 66777776543 35666544331
Q ss_pred -----------C--ChHHHHHHHHHHHHHhcCChhhHHHHHhcCCh--HHHHHHhcC-CCHHHHHHHHHHHHHhhcCCC-
Q 005044 303 -----------C--CSESQREAALLLGQFAATDSDCKVHIVQRGAV--RPLIEMLQS-PDVQLREMSAFALGRLAQDMH- 365 (717)
Q Consensus 303 -----------~--~~~~~~~a~~~L~~l~~~~~~~~~~l~~~~~l--~~L~~~l~~-~~~~v~~~a~~~L~~l~~~~~- 365 (717)
+ ...+..+++.+++-++ ..+.....+...++. +.|+..++. ....+.+-++.+|.||.....
T Consensus 227 ~~~~~~~~~~~~~~~~Ql~Y~~ll~iWlLS-F~~~~~~~l~~~~i~~~~~L~~i~k~s~KEKvvRv~la~l~Nll~~~~~ 305 (480)
T 1ho8_A 227 QLATRIVATNSNHLGIQLQYHSLLLIWLLT-FNPVFANELVQKYLSDFLDLLKLVKITIKEKVSRLCISIILQCCSTRVK 305 (480)
T ss_dssp ------------CCHHHHHHHHHHHHHHHT-TSHHHHHHHHTTSHHHHHHHHHHHHHCCSHHHHHHHHHHHHHTTSSSST
T ss_pred ccccccccccCCCccHHHHHHHHHHHHHHH-cCHHHHHHHHhcchHHHHHHHHHHHhhccchhHHHHHHHHHHHhcccch
Confidence 1 2456788999999995 556666666666543 566666765 568888899999999997542
Q ss_pred Cch----hh-HhcCChHHHHHhhcC---CChhHHHHHHH-------HHHhccCCCcchHHHHHhcCccccccchhHHhhh
Q 005044 366 NQA----GI-AHNGGLVPLLKLLDS---KNGSLQHNAAF-------ALYGLADNEDNVADFIRVGGVQKLQDGEFIVQAT 430 (717)
Q Consensus 366 ~~~----~l-~~~~~l~~L~~ll~~---~~~~v~~~a~~-------~L~~l~~~~~~~~~l~~~~~i~~L~~~~~~~~~~ 430 (717)
... .+ +..++ .++++.|.. .|+++....-. .+..++..+++..++.. |-++ .+-.+..
T Consensus 306 ~~~~~~~~~~~~~~~-l~~l~~L~~rk~~Dedl~edl~~L~e~L~~~~~~ltsfDeY~~El~s-G~L~----WSP~H~s- 378 (480)
T 1ho8_A 306 QHKKVIKQLLLLGNA-LPTVQSLSERKYSDEELRQDISNLKEILENEYQELTSFDEYVAELDS-KLLC----WSPPHVD- 378 (480)
T ss_dssp THHHHHHHHHHHHCH-HHHHHHHHSSCCSSHHHHHHHHHHHHHHHHHHHTCCHHHHHHHHHHH-TCCC----CCGGGGC-
T ss_pred hhhhHHHHHHHHccc-hHHHHHHhhCCCCcHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHhc-CCcc----cCCCccc-
Confidence 222 12 22344 456666643 45555444333 33344434444444443 3221 1111111
Q ss_pred HHHHHHHHHHHHHHhhhchHHHHHHHHhh----------cchhHHHHHHHHHHhccCC-CCCceeeecCCCHHHHHHHhc
Q 005044 431 KDCVAKTLKRLEEKIHGRVLNHLLYLMRV----------AEKGVQRRVALALAHLCSP-DDQRTIFIDGGGLELLLGLLG 499 (717)
Q Consensus 431 ~~~~~~~~~~l~~~~~~~~~~~L~~ll~~----------~~~~v~~~a~~aL~~l~~~-~~~~~~~~~~~~l~~L~~ll~ 499 (717)
..-+.+...++.+ -...++..|+++|.+ .++.+...||.=|+.++.. +..+..+.+.|+-..+++++.
T Consensus 379 e~FW~ENa~kf~e-~~~~llk~L~~iL~~~~~~~~~~~s~d~~~laVAc~Digefvr~~P~gr~i~~~lg~K~~VM~Lm~ 457 (480)
T 1ho8_A 379 NGFWSDNIDEFKK-DNYKIFRQLIELLQAKVRNGDVNAKQEKIIIQVALNDITHVVELLPESIDVLDKTGGKADIMELLN 457 (480)
T ss_dssp HHHHHHHSGGGSS-GGGHHHHHHHHHHHHHHHTTCCCSHHHHHHHHHHHHHHHHHHHHCTTHHHHHHHHSHHHHHHHHTS
T ss_pred hhHHHHHHHHHHh-cchHHHHHHHHHHhhhccccccccCCCcceEEeecccHHHHHHHCcchhHHHHHcCcHHHHHHHhc
Confidence 1111111222211 344588999999984 4788888899999999865 456667777899999999999
Q ss_pred CCCchhhhhhHHHHHHhhhccc
Q 005044 500 STNPKQQLDGAVALFKLANKAT 521 (717)
Q Consensus 500 ~~~~~v~~~a~~~l~~L~~~~~ 521 (717)
++|++||.+|..++..+..+.+
T Consensus 458 h~d~~Vr~~AL~avQklm~~~~ 479 (480)
T 1ho8_A 458 HSDSRVKYEALKATQAIIGYTF 479 (480)
T ss_dssp CSSHHHHHHHHHHHHHHHHHSC
T ss_pred CCCHHHHHHHHHHHHHHHHhcC
Confidence 9999999999999999887643
No 96
>3b2a_A TON_1937, putative uncharacterized protein; heat-repeats, hypothetical, unknown function; 2.20A {Thermococcus onnurineus}
Probab=98.59 E-value=4.8e-06 Score=74.80 Aligned_cols=189 Identities=17% Similarity=0.102 Sum_probs=150.7
Q ss_pred ChHHHHHHHhccccCCCccchhHHHHHHHHHHHHHhhcCchhhhHHHhcCCcHHHHHhhcCCCHHHHHHHHHHHHHhhcc
Q 005044 158 ALSHLVNLLKRHMDSNCSRAVNSVIRRAADAITNLAHENSSIKTRVRMEGGIPPLVELLEFTDTKVQRAAAGALRTLAFK 237 (717)
Q Consensus 158 ~i~~L~~lL~~~~~~~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~L~~~ 237 (717)
.+..|..+|.+.++ .++..++.+|..+...-+..-....-...++.++.++++.|..+...|+++|..|..+
T Consensus 34 ~l~~L~~LL~dkD~--------~vk~raL~~LeellK~~~~~l~~~~~e~~Ld~iI~llk~~dEkval~A~r~L~~LLe~ 105 (265)
T 3b2a_A 34 ALFLILELAGEDDE--------TTRLRAFVALGEILKRADSDLRMMVLERHLDVFINALSQENEKVTIKALRALGYLVKD 105 (265)
T ss_dssp HHHHHHHHTTSSCH--------HHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTCCSTTHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHhccch--------HHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHcC
Confidence 47888999977766 8999999999999986544444444456889999999999999999999999999987
Q ss_pred ChhhHHHHHhcCCHHHHHHHHcCCCHHHHHHHHHHHHHhhcCChHHHHHHHHcCChHHHHHhhccCChHHHHHHHHHHHH
Q 005044 238 NDENKNQIVECNALPTLILMLRSEDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLSSCCSESQREAALLLGQ 317 (717)
Q Consensus 238 ~~~~~~~~~~~g~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~l~~L~~ll~~~~~~~~~~a~~~L~~ 317 (717)
.|-....+.. +...+..+++++++-.+.+++..++.+-..+.. .+++..+..++.+.+.+++..+..++.+
T Consensus 106 vpL~~~~y~K--l~~aL~dlik~~~~il~~eaae~Lgklkv~~~~-------~~V~~~l~sLl~Skd~~vK~agl~~L~e 176 (265)
T 3b2a_A 106 VPMGSKTFLK--AAKTLVSLLESPDDMMRIETIDVLSKLQPLEDS-------KLVRTYINELVVSPDLYTKVAGFCLFLN 176 (265)
T ss_dssp CCBCHHHHHH--HHHHHHHHTTSCCHHHHHHHHHHHHHCCBSCCC-------HHHHHHHHHHHTCSSHHHHHHHHHHHHH
T ss_pred CCCCHHHHHH--HHHHHHHHhcCCCchHHHHHHHHhCcCCcccch-------HHHHHHHHHHHhCCChhHHHHHHHHHHH
Confidence 7766666665 478899999999999999999999999332211 2346788899999999999999999999
Q ss_pred HhcCChhhHHHHHhcCChHHHHHHhcCCCHHHHHHHHHHHHHhhcCCCC
Q 005044 318 FAATDSDCKVHIVQRGAVRPLIEMLQSPDVQLREMSAFALGRLAQDMHN 366 (717)
Q Consensus 318 l~~~~~~~~~~l~~~~~l~~L~~~l~~~~~~v~~~a~~~L~~l~~~~~~ 366 (717)
+++...+.. + -.+++.-+-.++++.|+.+++-|+.++-.+...+-.
T Consensus 177 ia~~S~D~~--i-~~~I~~eI~elL~~eD~~l~e~aLd~Le~ils~pi~ 222 (265)
T 3b2a_A 177 MLNSSADSG--H-LTLILDEIPSLLQNDNEFIVELALDVLEKALSFPLL 222 (265)
T ss_dssp HGGGCSSCC--C-GGGTTTTHHHHHTCSCHHHHHHHHHHHHHHTTSCCC
T ss_pred hhcccCCHH--H-HHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHcCccc
Confidence 986432210 1 134667788999999999999999999999876533
No 97
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N
Probab=98.58 E-value=5.9e-06 Score=91.60 Aligned_cols=290 Identities=13% Similarity=0.086 Sum_probs=195.0
Q ss_pred HHHhHHHHHHHHhc-CChhhHHHHHhCCChHHHHHHHhccccCCCccchhHHHHHHHHHHHHHhhcCchhhhHHHhcCCc
Q 005044 131 EVEKGSAFALGLLA-VKPEHQQLIVDNGALSHLVNLLKRHMDSNCSRAVNSVIRRAADAITNLAHENSSIKTRVRMEGGI 209 (717)
Q Consensus 131 ~v~~~a~~~L~~l~-~~~~~~~~~~~~~~i~~L~~lL~~~~~~~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i 209 (717)
..+-.|+..|+-+- .+.+ +++..|-..|...... ...++..|+..|+.+..+... . .+
T Consensus 373 ~~k~sA~aSLGlIh~g~~~--------~gl~~L~~yL~~~~s~-----~~~ik~GAllaLGli~ag~~~---~-----~~ 431 (963)
T 4ady_A 373 WAKFTATASLGVIHKGNLL--------EGKKVMAPYLPGSRAS-----SRFIKGGSLYGLGLIYAGFGR---D-----TT 431 (963)
T ss_dssp HHHHHHHHHHHHHTSSCTT--------THHHHHTTTSTTSCCS-----CHHHHHHHHHHHHHHTTTTTH---H-----HH
T ss_pred HHHHHHHHHhhhhccCchH--------HHHHHHHHhccccCCC-----cHHHHHHHHHHHHHhcCCCcH---H-----HH
Confidence 34556666666665 3321 2355555555421010 016788888888887664432 1 34
Q ss_pred HHHHHhhcCCC--------HHHHHHHHHHHHHhhccChhhHHHHHhcCCHHHHHHHHcCCCHHHHHHHHHHHHHhhcC--
Q 005044 210 PPLVELLEFTD--------TKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSEDSAIHYEAVGVIGNLVHS-- 279 (717)
Q Consensus 210 ~~L~~ll~~~~--------~~v~~~a~~~L~~L~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~-- 279 (717)
..|...+.+++ +.++..|+..|.....+... ..+++.|...+.+++..++..|+.+|+.+..+
T Consensus 432 ~lL~~~L~~~~~~~~~~~~~~ir~gAaLGLGla~~GS~~-------eev~e~L~~~L~dd~~~~~~~AalALGli~vGTg 504 (963)
T 4ady_A 432 DYLKNIIVENSGTSGDEDVDVLLHGASLGIGLAAMGSAN-------IEVYEALKEVLYNDSATSGEAAALGMGLCMLGTG 504 (963)
T ss_dssp HHHHHHHHHHSSCCSCHHHHHHHHHHHHHHHHHSTTCCC-------HHHHHHHHHHHHTCCHHHHHHHHHHHHHHHTTCC
T ss_pred HHHHHHHcCccccccccccHHHHHHHHHHHHHHhcCCCC-------HHHHHHHHHHHhcCCHHHHHHHHHHHhhhhcccC
Confidence 56777776554 67888888888887543221 12467788888888877778888888877433
Q ss_pred ChHHHHHHHHcCChHHHHHhh-ccCChHHHHHHHHHHHHHhcCChhhHHHHHhcCChHHHHHHhc-CCCHHHHHHHHHHH
Q 005044 280 SPNIKKEVLAAGALQPVIGLL-SSCCSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQ-SPDVQLREMSAFAL 357 (717)
Q Consensus 280 ~~~~~~~~~~~g~l~~L~~ll-~~~~~~~~~~a~~~L~~l~~~~~~~~~~l~~~~~l~~L~~~l~-~~~~~v~~~a~~~L 357 (717)
+... +..|++.+ .+.+..+++.++..|+.+..+.++ .++.+++.|. +.++.+|..++.++
T Consensus 505 n~~a---------i~~LL~~~~e~~~e~vrR~aalgLGll~~g~~e---------~~~~li~~L~~~~dp~vRygaa~al 566 (963)
T 4ady_A 505 KPEA---------IHDMFTYSQETQHGNITRGLAVGLALINYGRQE---------LADDLITKMLASDESLLRYGGAFTI 566 (963)
T ss_dssp CHHH---------HHHHHHHHHHCSCHHHHHHHHHHHHHHTTTCGG---------GGHHHHHHHHHCSCHHHHHHHHHHH
T ss_pred CHHH---------HHHHHHHHhccCcHHHHHHHHHHHHhhhCCChH---------HHHHHHHHHHhCCCHHHHHHHHHHH
Confidence 3332 33444443 345678999999999988644443 4566767765 57899999888888
Q ss_pred HHhhcCCCCchhhHhcCChHHHHHhh-cCCChhHHHHHHHHHHhccCCCcchHHHHHhcCccccccchhHHhhhHHHHHH
Q 005044 358 GRLAQDMHNQAGIAHNGGLVPLLKLL-DSKNGSLQHNAAFALYGLADNEDNVADFIRVGGVQKLQDGEFIVQATKDCVAK 436 (717)
Q Consensus 358 ~~l~~~~~~~~~l~~~~~l~~L~~ll-~~~~~~v~~~a~~~L~~l~~~~~~~~~l~~~~~i~~L~~~~~~~~~~~~~~~~ 436 (717)
+.-..+..+. ..++.|+..+ .+.+..+|+.|..+|+.+....+.
T Consensus 567 glAyaGTGn~------~aIq~LL~~~~~d~~d~VRraAViaLGlI~~g~~e----------------------------- 611 (963)
T 4ady_A 567 ALAYAGTGNN------SAVKRLLHVAVSDSNDDVRRAAVIALGFVLLRDYT----------------------------- 611 (963)
T ss_dssp HHHTTTSCCH------HHHHHHHHHHHHCSCHHHHHHHHHHHHHHTSSSCS-----------------------------
T ss_pred HHHhcCCCCH------HHHHHHHHHhccCCcHHHHHHHHHHHHhhccCCHH-----------------------------
Confidence 7655554442 2345455544 466788999999999988654321
Q ss_pred HHHHHHHHhhhchHHHHHH-HHhhcchhHHHHHHHHHHhccCCCCCceeeecCCCHHHHHHHhcCCCchhhhhhHHHHHH
Q 005044 437 TLKRLEEKIHGRVLNHLLY-LMRVAEKGVQRRVALALAHLCSPDDQRTIFIDGGGLELLLGLLGSTNPKQQLDGAVALFK 515 (717)
Q Consensus 437 ~~~~l~~~~~~~~~~~L~~-ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~~~~~~l~~L~~ll~~~~~~v~~~a~~~l~~ 515 (717)
.+++++. ++++.++.+|..++.+|+.++.+... ..++..|.++..+++..|+..|+.+|..
T Consensus 612 ------------~v~rlv~~L~~~~d~~VR~gAalALGli~aGn~~------~~aid~L~~L~~D~d~~Vrq~Ai~ALG~ 673 (963)
T 4ady_A 612 ------------TVPRIVQLLSKSHNAHVRCGTAFALGIACAGKGL------QSAIDVLDPLTKDPVDFVRQAAMIALSM 673 (963)
T ss_dssp ------------SHHHHTTTGGGCSCHHHHHHHHHHHHHHTSSSCC------HHHHHHHHHHHTCSSHHHHHHHHHHHHH
T ss_pred ------------HHHHHHHHHHhcCCHHHHHHHHHHHHHhccCCCc------HHHHHHHHHHccCCCHHHHHHHHHHHHH
Confidence 2344554 44678999999999999999876543 2457899999999999999999999999
Q ss_pred hhhc
Q 005044 516 LANK 519 (717)
Q Consensus 516 L~~~ 519 (717)
+...
T Consensus 674 Ig~g 677 (963)
T 4ady_A 674 ILIQ 677 (963)
T ss_dssp HSTT
T ss_pred HhcC
Confidence 8865
No 98
>2qk2_A LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2, heat repeat, micro plus END, +TIP, protein binding; 2.10A {Drosophila melanogaster}
Probab=98.58 E-value=1.1e-07 Score=91.53 Aligned_cols=187 Identities=14% Similarity=0.068 Sum_probs=139.2
Q ss_pred hHHHHHhhccCChHHHHHHHHHHHHHhcCChhhHHHHHhcCChHHHHHHhc-CCCHHHHHHHHHHHHHhhcCCCCchhhH
Q 005044 293 LQPVIGLLSSCCSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQ-SPDVQLREMSAFALGRLAQDMHNQAGIA 371 (717)
Q Consensus 293 l~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~l~~~~~l~~L~~~l~-~~~~~v~~~a~~~L~~l~~~~~~~~~l~ 371 (717)
-+.+.+.+.+.++..|..++..|..+....+.....- -..+++.|...+. +.+..++..|+.++..|+..-...-.-.
T Consensus 17 ~~~l~~~l~s~~w~~R~~a~~~L~~l~~~~~~~~~~~-~~~i~~~L~~~l~kd~~~~V~~~a~~~l~~la~~l~~~~~~~ 95 (242)
T 2qk2_A 17 PKDFYDKLEEKKWTLRKESLEVLEKLLTDHPKLENGE-YGALVSALKKVITKDSNVVLVAMAGKCLALLAKGLAKRFSNY 95 (242)
T ss_dssp CTTHHHHHTCSSHHHHHHHHHHHHHHHHHCSSBCCCC-CHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHHGGGGHHH
T ss_pred CHHHHhhhccCCHHHHHHHHHHHHHHHccCCCCCCCC-HHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHhhhHHHH
Confidence 3457788889999999999999999976532211000 1235677888884 8999999999999999996432221222
Q ss_pred hcCChHHHHHhhcCCChhHHHHHHHHHHhccCCCcchHHHHHhcCccccccchhHHhhhHHHHHHHHHHHHHHhhhchHH
Q 005044 372 HNGGLVPLLKLLDSKNGSLQHNAAFALYGLADNEDNVADFIRVGGVQKLQDGEFIVQATKDCVAKTLKRLEEKIHGRVLN 451 (717)
Q Consensus 372 ~~~~l~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~l~~~~~i~~L~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 451 (717)
-...++.++..+.+.+..++..+..+|..++..... ..+++
T Consensus 96 ~~~ilp~ll~~l~d~~~~vr~~a~~aL~~~~~~~~~---------------------------------------~~ll~ 136 (242)
T 2qk2_A 96 ASACVPSLLEKFKEKKPNVVTALREAIDAIYASTSL---------------------------------------EAQQE 136 (242)
T ss_dssp HHHHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTSCH---------------------------------------HHHHH
T ss_pred HHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHcCCH---------------------------------------HHHHH
Confidence 334688899999999999999999999998764311 12677
Q ss_pred HHHHHHhhcchhHHHHHHHHHHhccCCCC-C-ceeeecCCCHHHHHHHhcCCCchhhhhhHHHHHHhhhc
Q 005044 452 HLLYLMRVAEKGVQRRVALALAHLCSPDD-Q-RTIFIDGGGLELLLGLLGSTNPKQQLDGAVALFKLANK 519 (717)
Q Consensus 452 ~L~~ll~~~~~~v~~~a~~aL~~l~~~~~-~-~~~~~~~~~l~~L~~ll~~~~~~v~~~a~~~l~~L~~~ 519 (717)
.+...+.+.++.+|..++..|..+..... . .....-...+|.|..++.++++++|..|..++..++..
T Consensus 137 ~l~~~l~~~~~~vr~~~l~~l~~~l~~~~~~~~~~~~l~~l~p~l~~~l~D~~~~VR~~A~~~l~~l~~~ 206 (242)
T 2qk2_A 137 SIVESLSNKNPSVKSETALFIARALTRTQPTALNKKLLKLLTTSLVKTLNEPDPTVRDSSAEALGTLIKL 206 (242)
T ss_dssp HHHHHTTCSCHHHHHHHHHHHHHHHTTCCGGGCCHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHcCCChHHHHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHH
Confidence 78889999999999999999999644321 1 11111135789999999999999999999999998865
No 99
>2eqx_A Kelch repeat and BTB domain-containing protein 4; BACK domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.53 E-value=5.9e-08 Score=78.57 Aligned_cols=58 Identities=14% Similarity=0.202 Sum_probs=51.6
Q ss_pred HhcCChhcHHHHHHHHHHcCcHHHHHHHHHHHHHhHHHhcCCchhhhchhhcHHHHHH
Q 005044 644 AQDISLENVSSMYELSEAFHAISLRHTCILYIMEHFDKLSTRPGHSNLIQRIIPEIHN 701 (717)
Q Consensus 644 ~~~i~~~n~~~~~~~a~~~~~~~L~~~~~~~i~~~~~~~~~~~~f~~l~~~~~~~l~~ 701 (717)
.++++++||+.++.+|+.|++++|.+.|.+||.+||.++.++++|.+||.+.+.++++
T Consensus 5 ~~~L~~~NCl~i~~~A~~~~~~~L~~~a~~fi~~nF~~v~~~~eFl~L~~~~L~~lL~ 62 (105)
T 2eqx_A 5 SSGVQVGNCLQVMWLADRHSDPELYTAAKHCAKTHLAQLQNTEEFLHLPHRLLTDIIS 62 (105)
T ss_dssp CCCCCTTTHHHHHHHHHHTTCHHHHHHHHHHHHHTCHHHHTSHHHHHSCHHHHHHHHH
T ss_pred hccCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHhcccHhhCCHHHHHHHHc
Confidence 4568999999999999999999999999999999999999999999996665544443
No 100
>2db0_A 253AA long hypothetical protein; heat repeats, helical structure, structural genomics; 2.20A {Pyrococcus horikoshii}
Probab=98.52 E-value=2.1e-05 Score=67.39 Aligned_cols=182 Identities=18% Similarity=0.203 Sum_probs=141.1
Q ss_pred CCcHHHHHhhcCCCHHHHHHHHHHHHHhhccChhhHHHHHhcCCHHHHHHHHc-CCCHHHHHHHHHHHHHhhcCChHHHH
Q 005044 207 GGIPPLVELLEFTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLR-SEDSAIHYEAVGVIGNLVHSSPNIKK 285 (717)
Q Consensus 207 ~~i~~L~~ll~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~g~i~~L~~ll~-~~~~~v~~~a~~~L~~l~~~~~~~~~ 285 (717)
.++..++.+|.++-|.++.+|+..+..++...++....+. ..|+-+++ ++....-....++++.++.-.++...
T Consensus 32 ~~l~~lI~~LDDDlwtV~kNAl~vi~~i~~~~~el~epl~-----~kL~vm~~ksEaIpltqeIa~a~G~la~i~Pe~v~ 106 (253)
T 2db0_A 32 SVLKKLIELLDDDLWTVVKNAISIIMVIAKTREDLYEPML-----KKLFSLLKKSEAIPLTQEIAKAFGQMAKEKPELVK 106 (253)
T ss_dssp HHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCGGGHHHHH-----HHHHHHHHHCCSHHHHHHHHHHHHHHHHHCHHHHH
T ss_pred HHHHHHHHHhccHHHHHHHhHHHHHHHHHHHhHHHHHHHH-----HHHHHHHhhcccCchHHHHHHHHhHHHHhCHHHHH
Confidence 4567889999889999999999999999987777665544 34555554 56667778889999999877776533
Q ss_pred HHHHcCChHHHHHhhccCChHHHHHHHHHHHHHhcCChhhHHHHHhcCChHHHHHHhcCCCHHHHHHHHHHHHHhhcCCC
Q 005044 286 EVLAAGALQPVIGLLSSCCSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQSPDVQLREMSAFALGRLAQDMH 365 (717)
Q Consensus 286 ~~~~~g~l~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~l~~~~~l~~L~~~l~~~~~~v~~~a~~~L~~l~~~~~ 365 (717)
+.+|.+..-..-+++.++.....+|..++..+|..... ++..+..++.+++..-+..++..+..+..+
T Consensus 107 -----~vVp~lfanyrigd~kikIn~~yaLeeIaranP~l~~~-----v~rdi~smltskd~~Dkl~aLnFi~alGen-- 174 (253)
T 2db0_A 107 -----SMIPVLFANYRIGDEKTKINVSYALEEIAKANPMLMAS-----IVRDFMSMLSSKNREDKLTALNFIEAMGEN-- 174 (253)
T ss_dssp -----HHHHHHHHHSCCCSHHHHHHHHHHHHHHHHHCHHHHHH-----HHHHHHHHTSCSSHHHHHHHHHHHHTCCTT--
T ss_pred -----hhHHHHHHHHhcCCccceecHHHHHHHHHHhChHHHHH-----HHHHHHHHhcCCChHHHHHHHHHHHHHhcc--
Confidence 34677777777789999999999999999877765443 457799999998877777777776666543
Q ss_pred CchhhHhcCChHHHHHhhcCCChhHHHHHHHHHHhccCCCcc
Q 005044 366 NQAGIAHNGGLVPLLKLLDSKNGSLQHNAAFALYGLADNEDN 407 (717)
Q Consensus 366 ~~~~l~~~~~l~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~ 407 (717)
+.. .-...++.|..+|++++.-|+..+..+|.+++...+.
T Consensus 175 -~~~-yv~PfLprL~aLL~D~deiVRaSaVEtL~~lA~~npk 214 (253)
T 2db0_A 175 -SFK-YVNPFLPRIINLLHDGDEIVRASAVEALVHLATLNDK 214 (253)
T ss_dssp -THH-HHGGGHHHHHGGGGCSSHHHHHHHHHHHHHHHTSCHH
T ss_pred -Ccc-ccCcchHHHHHHHcCcchhhhHHHHHHHHHHHHcCHH
Confidence 222 2245788999999999999999999999999875433
No 101
>3tjz_B Coatomer subunit gamma; protein trafficking, golgi membrane, protein transport-prote binding complex; HET: GNP; 2.90A {Bos taurus}
Probab=98.51 E-value=5.2e-06 Score=82.59 Aligned_cols=246 Identities=11% Similarity=0.066 Sum_probs=163.0
Q ss_pred CcHHHHHhhcCCCHHHHHHHHHHHHHhhccChhhHHHHHhcCCHHHHHHHHcCCCHHHHHHHHHHHHHhhcCChHHHHHH
Q 005044 208 GIPPLVELLEFTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSEDSAIHYEAVGVIGNLVHSSPNIKKEV 287 (717)
Q Consensus 208 ~i~~L~~ll~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~ 287 (717)
....+++++.+++..+++.+.-.+.+++...++. +. ++..|.+-++++++-+|..|+++|+++.. ++..+.
T Consensus 69 lf~~v~kl~~s~d~~lKrLvYLyl~~~~~~~~e~---iL---v~Nsl~kDl~~~N~~iR~lALRtL~~I~~--~~m~~~- 139 (355)
T 3tjz_B 69 AFFAMTKLFQSNDPTLRRMCYLTIKEMSCIAEDV---II---VTSSLTKDMTGKEDSYRGPAVRALCQITD--STMLQA- 139 (355)
T ss_dssp HHHHHHGGGGCCCHHHHHHHHHHHHHHTTTSSCG---GG---GHHHHHHHHHSSCHHHHHHHHHHHHHHCC--TTTHHH-
T ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHhCCCHHHH---HH---HHHHHHhhcCCCcHhHHHHHHHHHhcCCC--HHHHHH-
Confidence 3456788999999999999999999988632221 21 46778889999999999999999999954 333222
Q ss_pred HHcCChHHHHHhhccCChHHHHHHHHHHHHHhcCChhhHHHHHhcCChHHHHHHhcCCCHHHHHHHHHHHHHhhcCCCCc
Q 005044 288 LAAGALQPVIGLLSSCCSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQSPDVQLREMSAFALGRLAQDMHNQ 367 (717)
Q Consensus 288 ~~~g~l~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~l~~~~~l~~L~~~l~~~~~~v~~~a~~~L~~l~~~~~~~ 367 (717)
+.+.+.+.+.+.++-+++.|+.+...+....++.. .+++..+-+++.+.++.+..+|+.+|..+...+..
T Consensus 140 ----l~~~lk~~L~d~~pyVRk~A~l~~~kL~~~~pe~v-----~~~~~~l~~ll~d~n~~V~~~Al~lL~ei~~~d~~- 209 (355)
T 3tjz_B 140 ----IERYMKQAIVDKVPSVSSSALVSSLHLLKCSFDVV-----KRWVNEAQEAASSDNIMVQYHALGLLYHVRKNDRL- 209 (355)
T ss_dssp ----HHHHHHHHHTCSSHHHHHHHHHHHHHHTTTCHHHH-----HTTHHHHHHHTTCSSHHHHHHHHHHHHHHHTTCHH-
T ss_pred ----HHHHHHHHcCCCCHHHHHHHHHHHHHHhccCHHHH-----HHHHHHHHHHhcCCCccHHHHHHHHHHHHHhhchH-
Confidence 45678889999999999999999999986666643 26889999999999999999999999999864311
Q ss_pred hhhHhcCChHHHHHhhcCC---ChhHHHHHHHHHHhccCCCcchHHHHHhcCccccccchhHHhhhHHHHHHHHHHHHHH
Q 005044 368 AGIAHNGGLVPLLKLLDSK---NGSLQHNAAFALYGLADNEDNVADFIRVGGVQKLQDGEFIVQATKDCVAKTLKRLEEK 444 (717)
Q Consensus 368 ~~l~~~~~l~~L~~ll~~~---~~~v~~~a~~~L~~l~~~~~~~~~l~~~~~i~~L~~~~~~~~~~~~~~~~~~~~l~~~ 444 (717)
.+..++..+... ++..+...+..+..+....+..
T Consensus 210 -------a~~kLv~~l~~~~l~~~~~q~~llr~l~~~~~~d~~~------------------------------------ 246 (355)
T 3tjz_B 210 -------AVSKMISKFTRHGLKSPFAYCMMIRVASRQLEDEDGS------------------------------------ 246 (355)
T ss_dssp -------HHHHHHHHHHSSCCSCHHHHHHHHHHHTCC-------------------------------------------
T ss_pred -------HHHHHHHHHhcCCCcChHHHHHHHHHHHHhccccchh------------------------------------
Confidence 233444444332 3444444444444444322000
Q ss_pred hhhchHHHHHHHHhhcchhHHHHHHHHHHhccCCCCCceeeecCCCHHHHHHHhcCCCchhhhhhHHHHHHhhhc
Q 005044 445 IHGRVLNHLLYLMRVAEKGVQRRVALALAHLCSPDDQRTIFIDGGGLELLLGLLGSTNPKQQLDGAVALFKLANK 519 (717)
Q Consensus 445 ~~~~~~~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~~~~~~l~~L~~ll~~~~~~v~~~a~~~l~~L~~~ 519 (717)
....+++.+...|++.++.|..+|+++|..+...+.. . -..++..|..++.++++.+|..|...|..+...
T Consensus 247 ~~~~~~~~l~~~L~~~~~aVvyEa~k~I~~l~~~~~~--~--~~~a~~~L~~fLss~d~niryvaLr~L~~l~~~ 317 (355)
T 3tjz_B 247 RDSPLFDFIESCLRNKHEMVVYEAASAIVNLPGCSAK--E--LAPAVSVLQLFCSSPKAALRYAAVRTLNKVAMK 317 (355)
T ss_dssp ----------CCCCCSSHHHHHHHHHHHTC---------------CCCTHHHHHHSSSSSSHHHHHHCC------
T ss_pred hHHHHHHHHHHHHcCCChHHHHHHHHHHHhccCCCHH--H--HHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHH
Confidence 0112455566777888999999999999998653221 1 134567788889999999999999988888764
No 102
>2qk2_A LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2, heat repeat, micro plus END, +TIP, protein binding; 2.10A {Drosophila melanogaster}
Probab=98.45 E-value=1.6e-06 Score=83.23 Aligned_cols=174 Identities=15% Similarity=0.237 Sum_probs=130.0
Q ss_pred hHHHHHHHHHHHHHhhcCchhhhHHHhcCCcHHHHHhh-cCCCHHHHHHHHHHHHHhhccChhhHHHHHhcCCHHHHHHH
Q 005044 179 NSVIRRAADAITNLAHENSSIKTRVRMEGGIPPLVELL-EFTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILM 257 (717)
Q Consensus 179 ~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll-~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~g~i~~L~~l 257 (717)
|..+..++..|..++...+...... ....++.|...+ ++++..++..|+.++..|+..-...-.... ..+++.++..
T Consensus 29 w~~R~~a~~~L~~l~~~~~~~~~~~-~~~i~~~L~~~l~kd~~~~V~~~a~~~l~~la~~l~~~~~~~~-~~ilp~ll~~ 106 (242)
T 2qk2_A 29 WTLRKESLEVLEKLLTDHPKLENGE-YGALVSALKKVITKDSNVVLVAMAGKCLALLAKGLAKRFSNYA-SACVPSLLEK 106 (242)
T ss_dssp HHHHHHHHHHHHHHHHHCSSBCCCC-CHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHHGGGGHHHH-HHHHHHHHHG
T ss_pred HHHHHHHHHHHHHHHccCCCCCCCC-HHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHhhhHHHHH-HHHHHHHHHH
Confidence 5899999999999987633321100 013466778888 489999999999999999963222212222 2378999999
Q ss_pred HcCCCHHHHHHHHHHHHHhhcCChHHHHHHHHcCChHHHHHhhccCChHHHHHHHHHHHHHhcCC-hhh-HHHHHhcCCh
Q 005044 258 LRSEDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLSSCCSESQREAALLLGQFAATD-SDC-KVHIVQRGAV 335 (717)
Q Consensus 258 l~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~l~~L~~ll~~~~~~~~~~a~~~L~~l~~~~-~~~-~~~l~~~~~l 335 (717)
+.+.++.+|..+..+|..++.... . ..+++.+...+.+.++.++..++..|..+.... +.. ..... ..++
T Consensus 107 l~d~~~~vr~~a~~aL~~~~~~~~-~------~~ll~~l~~~l~~~~~~vr~~~l~~l~~~l~~~~~~~~~~~~l-~~l~ 178 (242)
T 2qk2_A 107 FKEKKPNVVTALREAIDAIYASTS-L------EAQQESIVESLSNKNPSVKSETALFIARALTRTQPTALNKKLL-KLLT 178 (242)
T ss_dssp GGCCCHHHHHHHHHHHHHHHTTSC-H------HHHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCCGGGCCHHHH-HHHH
T ss_pred HcCCCHHHHHHHHHHHHHHHHcCC-H------HHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHcCCCCccHHHH-HHHH
Confidence 999999999999999999976432 1 125778888999999999999999999965432 331 12222 3578
Q ss_pred HHHHHHhcCCCHHHHHHHHHHHHHhhc
Q 005044 336 RPLIEMLQSPDVQLREMSAFALGRLAQ 362 (717)
Q Consensus 336 ~~L~~~l~~~~~~v~~~a~~~L~~l~~ 362 (717)
|.|...+.+.++.+|..|..+++.++.
T Consensus 179 p~l~~~l~D~~~~VR~~A~~~l~~l~~ 205 (242)
T 2qk2_A 179 TSLVKTLNEPDPTVRDSSAEALGTLIK 205 (242)
T ss_dssp HHHHHHHTSSCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhcCCChHHHHHHHHHHHHHHH
Confidence 999999999999999999999999986
No 103
>2qk1_A Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, heat repeat, microtubule plus END, +TIP, protein binding; 1.70A {Saccharomyces cerevisiae}
Probab=98.39 E-value=4.5e-07 Score=86.84 Aligned_cols=193 Identities=12% Similarity=0.080 Sum_probs=138.0
Q ss_pred HHHHhhccCChHHHHHHHHHHHH-HhcCChhhHHHHHh-cCChHHHHHHh-cCCCHHHHHHHHHHHHHhhcCCC-Cchh-
Q 005044 295 PVIGLLSSCCSESQREAALLLGQ-FAATDSDCKVHIVQ-RGAVRPLIEML-QSPDVQLREMSAFALGRLAQDMH-NQAG- 369 (717)
Q Consensus 295 ~L~~ll~~~~~~~~~~a~~~L~~-l~~~~~~~~~~l~~-~~~l~~L~~~l-~~~~~~v~~~a~~~L~~l~~~~~-~~~~- 369 (717)
.+.+.+.+.+|.-|+.++..|.. +..+.+.....-.+ ..++..|...+ ++.+..++..|+.+|..|+.+-. ..-.
T Consensus 20 ~f~~~l~s~~w~eRk~al~~L~~~~~~~~~~i~~~~~~~~~~~~~L~~~l~~D~n~~v~~~A~~al~~la~~l~~~~f~~ 99 (249)
T 2qk1_A 20 DFQERITSSKWKDRVEALEEFWDSVLSQTKKLKSTSQNYSNLLGIYGHIIQKDANIQAVALAAQSVELICDKLKTPGFSK 99 (249)
T ss_dssp THHHHHTCSSHHHHHHHHHHHHHHTGGGCCCBCCTTCCCHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHHCTTTSCH
T ss_pred hHHHHhhcCCHHHHHHHHHHHHHHHHhcCCccccCcccHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHhcccccccH
Confidence 45667788999999999999999 86443332100001 23567788888 78899999999999999996432 2211
Q ss_pred hHhcCChHHHHHhhcCCChhHHHHHHHHHHhccCCCcchHHHHHhcCccccccchhHHhhhHHHHHHHHHHHHHHhhhch
Q 005044 370 IAHNGGLVPLLKLLDSKNGSLQHNAAFALYGLADNEDNVADFIRVGGVQKLQDGEFIVQATKDCVAKTLKRLEEKIHGRV 449 (717)
Q Consensus 370 l~~~~~l~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~l~~~~~i~~L~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 449 (717)
-.....++.++..+.+....|+..+..++..++...+... ..+.+ ..+
T Consensus 100 ~y~~~llp~ll~~l~dkk~~V~~aa~~al~~i~~~~~~~~---~~~~l-----------------------------~~l 147 (249)
T 2qk1_A 100 DYVSLVFTPLLDRTKEKKPSVIEAIRKALLTICKYYDPLA---SSGRN-----------------------------EDM 147 (249)
T ss_dssp HHHHHHHHHHHHGGGCCCHHHHHHHHHHHHHHHHHSCTTC---TTCTT-----------------------------HHH
T ss_pred HHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHccccc---cCCcH-----------------------------HHH
Confidence 2223367889999999999999999999888865321100 00000 126
Q ss_pred HHHHHHHHhhcchhHHHHHHHHHHhccCCCCC--ce-eeec-CCCHHHHHHHhcCCCchhhhhhHHHHHHhhhc
Q 005044 450 LNHLLYLMRVAEKGVQRRVALALAHLCSPDDQ--RT-IFID-GGGLELLLGLLGSTNPKQQLDGAVALFKLANK 519 (717)
Q Consensus 450 ~~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~--~~-~~~~-~~~l~~L~~ll~~~~~~v~~~a~~~l~~L~~~ 519 (717)
++.|+..+.+.++.+|..++.+|..++..... .+ .-.- ...+|.|.+++.++++.+|..|..++..+...
T Consensus 148 l~~l~~~l~~k~~~vk~~al~~l~~~~~~~~~~~~~l~~~l~~~iip~l~~~l~D~~~~VR~aA~~~l~~i~~~ 221 (249)
T 2qk1_A 148 LKDILEHMKHKTPQIRMECTQLFNASMKEEKDGYSTLQRYLKDEVVPIVIQIVNDTQPAIRTIGFESFAILIKI 221 (249)
T ss_dssp HHHHHHHTTCSSHHHHHHHHHHHHHHHHHCCSCSHHHHHHHTTTHHHHHHHHHTCSSHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCChHHHHHHHHHHHHHHHHcCCcchhHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHH
Confidence 77889999999999999999999999754332 11 0112 56889999999999999999999999998864
No 104
>1te4_A Conserved protein MTH187; methanobacterium thermoautotrophicum, structural proteomics, heat-like repeat; NMR {Methanothermobacterthermautotrophicus} SCOP: a.118.1.16
Probab=98.38 E-value=5.7e-08 Score=83.18 Aligned_cols=122 Identities=16% Similarity=0.151 Sum_probs=93.0
Q ss_pred hcCChHHHHHHhcCCCHHHHHHHHHHHHHhhcCCCCchhhHhcCChHHHHHhhcCCChhHHHHHHHHHHhccCCCcchHH
Q 005044 331 QRGAVRPLIEMLQSPDVQLREMSAFALGRLAQDMHNQAGIAHNGGLVPLLKLLDSKNGSLQHNAAFALYGLADNEDNVAD 410 (717)
Q Consensus 331 ~~~~l~~L~~~l~~~~~~v~~~a~~~L~~l~~~~~~~~~l~~~~~l~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~ 410 (717)
....++.+..+|+++++.+|..|+++|.++.. ..++.|++++.+.++.++..++++|.++...
T Consensus 10 ~~~~~~~l~~~L~~~~~~vR~~A~~~L~~~~~-----------~~~~~L~~~L~d~~~~vR~~A~~aL~~~~~~------ 72 (131)
T 1te4_A 10 HSSGLVPRGSHMADENKWVRRDVSTALSRMGD-----------EAFEPLLESLSNEDWRIRGAAAWIIGNFQDE------ 72 (131)
T ss_dssp -----------CCSSCCCSSSSCCSSTTSCSS-----------TTHHHHHHGGGCSCHHHHHHHHHHHGGGCSH------
T ss_pred ccccHHHHHHHhcCCCHHHHHHHHHHHHHhCc-----------hHHHHHHHHHcCCCHHHHHHHHHHHHhcCCH------
Confidence 34567889999999999999998888876532 1368899999999999999999999988631
Q ss_pred HHHhcCccccccchhHHhhhHHHHHHHHHHHHHHhhhchHHHHHHHHhhcchhHHHHHHHHHHhccCCCCCceeeecCCC
Q 005044 411 FIRVGGVQKLQDGEFIVQATKDCVAKTLKRLEEKIHGRVLNHLLYLMRVAEKGVQRRVALALAHLCSPDDQRTIFIDGGG 490 (717)
Q Consensus 411 l~~~~~i~~L~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~~~~~~ 490 (717)
..++.|+.++.++++.||..++++|+++. +...
T Consensus 73 -------------------------------------~a~~~L~~~L~d~~~~VR~~A~~aL~~~~----------~~~a 105 (131)
T 1te4_A 73 -------------------------------------RAVEPLIKLLEDDSGFVRSGAARSLEQIG----------GERV 105 (131)
T ss_dssp -------------------------------------HHHHHHHHHHHHCCTHHHHHHHHHHHHHC----------SHHH
T ss_pred -------------------------------------HHHHHHHHHHcCCCHHHHHHHHHHHHHhC----------cHHH
Confidence 14667888999999999999999999985 2357
Q ss_pred HHHHHHHhcCCCchhhhhhHHHHHHh
Q 005044 491 LELLLGLLGSTNPKQQLDGAVALFKL 516 (717)
Q Consensus 491 l~~L~~ll~~~~~~v~~~a~~~l~~L 516 (717)
++.|..+++++++.++..|+++|.+|
T Consensus 106 ~~~L~~~l~d~~~~vr~~A~~aL~~i 131 (131)
T 1te4_A 106 RAAMEKLAETGTGFARKVAVNYLETH 131 (131)
T ss_dssp HHHHHHHTTSCCTHHHHHHHHHGGGC
T ss_pred HHHHHHHHhCCCHHHHHHHHHHHHhC
Confidence 89999999999999999999988653
No 105
>1hv2_A Elongin C, ELC1; protein-peptide complex, signaling protein; NMR {Saccharomyces cerevisiae} SCOP: d.42.1.1
Probab=98.38 E-value=1.2e-06 Score=69.51 Aligned_cols=79 Identities=19% Similarity=0.376 Sum_probs=67.0
Q ss_pred EEEEE-cCeEeehhHHHHhhccHHHHHhhcCCCCCCCCcceEcCCCCHHHHHHHHHHHhcCc--------------cccc
Q 005044 552 VTFLV-EGRRFYAHRICLLASSDAFRAMFDGGYREKDARDIEIPNIRWEVFELMMRFIYTGS--------------VDVT 616 (717)
Q Consensus 552 v~~~~-~~~~~~~h~~il~~~s~~f~~~~~~~~~e~~~~~i~l~~~~~~~~~~~l~~~Yt~~--------------~~~~ 616 (717)
|++.. +|..|.+++.+ +..|.+++.|+.+++ +.....|++++++..+++.+++|+|... ..++
T Consensus 6 v~L~SsDg~~f~V~~~v-A~~S~~ik~ml~~~~-e~~~~~Iplp~V~~~iL~kVieyc~~h~~~~~~~~~~~~i~~w~vd 83 (99)
T 1hv2_A 6 VTLVSKDDKEYEISRSA-AMISPTLKAMIEGPF-RESKGRIELKQFDSHILEKAVEYLNYNLKYSGVSEDDDEIPEFEIP 83 (99)
T ss_dssp EEEEETTTEEEEEEHHH-HTTCHHHHHHHHSST-TTCTTEEEETTSCHHHHHHHHHHHHHHHHHHHHCSSCSSCCCCCCC
T ss_pred EEEEecCCCEEEECHHH-HHHhHHHHHHHhccc-ccCCCceecCCcCHHHHHHHHHHHHHhcccCCCccccccCCCccCC
Confidence 55555 78999999997 789999999998866 6556789999999999999999998632 2467
Q ss_pred hhhHHHHHHHHHhhCh
Q 005044 617 LDIAQDLLRAADQYLL 632 (717)
Q Consensus 617 ~~~~~~ll~~A~~~~~ 632 (717)
.+++.+|+.+|+++++
T Consensus 84 ~~~lfeLi~AAnyLdI 99 (99)
T 1hv2_A 84 TEMSLELLLAADYLSI 99 (99)
T ss_dssp HHHHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHHHHhCc
Confidence 8899999999999874
No 106
>2fnj_C Transcription elongation factor B polypeptide 1; beta-sandwich, lectin-like, SPRY, protein transport/signaling protein complex; 1.80A {Mus musculus} SCOP: d.42.1.1 PDB: 1lqb_B 1lm8_C 2jz3_C 2xai_B 2c9w_C 2izv_C 3dcg_B 3zrc_B* 3zrf_B
Probab=98.30 E-value=1.2e-06 Score=69.06 Aligned_cols=80 Identities=21% Similarity=0.356 Sum_probs=62.4
Q ss_pred EEEEE-cCeEeehhHHHHhhccHHHHHhhcC--CCCCCCCcceEcCCCCHHHHHHHHHHHhcCc-----------cccch
Q 005044 552 VTFLV-EGRRFYAHRICLLASSDAFRAMFDG--GYREKDARDIEIPNIRWEVFELMMRFIYTGS-----------VDVTL 617 (717)
Q Consensus 552 v~~~~-~~~~~~~h~~il~~~s~~f~~~~~~--~~~e~~~~~i~l~~~~~~~~~~~l~~~Yt~~-----------~~~~~ 617 (717)
|++.. +|..|.+++.+ +..|.+++.|+.+ .+.|+....|++++++..+++.+++|+|... .+++.
T Consensus 3 v~L~SsDg~~f~V~~~~-A~~S~~ik~ml~~~~~~~e~~~~~Ipl~~V~~~iL~kVieyc~~h~~~~~~~~~i~~w~vd~ 81 (96)
T 2fnj_C 3 VKLISSDGHEFIVKREH-ALTSGTIKAMLSGPGQFAENETNEVNFREIPSHVLSKVCMYFTYKVRYTNSSTEIPEFPIAP 81 (96)
T ss_dssp EEEECTTSCEEEEEHHH-HTTSHHHHHHHHCC--------CEEECSSCCHHHHHHHHHHHHHHHHHHSCCSCCCCCCCCT
T ss_pred EEEEecCCCEEEeCHHH-HHHhHHHHHHHHccCCcccccCCceeCCCCCHHHHHHHHHHHHHccccCCCcccCCCcccCH
Confidence 44444 78999999997 7899999999985 3356666789999999999999999998643 24678
Q ss_pred hhHHHHHHHHHhhCh
Q 005044 618 DIAQDLLRAADQYLL 632 (717)
Q Consensus 618 ~~~~~ll~~A~~~~~ 632 (717)
+++.+|+.+|+++++
T Consensus 82 ~~l~eLi~AAnyLdI 96 (96)
T 2fnj_C 82 EIALELLMAANFLDC 96 (96)
T ss_dssp TTHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHhCc
Confidence 899999999999874
No 107
>1te4_A Conserved protein MTH187; methanobacterium thermoautotrophicum, structural proteomics, heat-like repeat; NMR {Methanothermobacterthermautotrophicus} SCOP: a.118.1.16
Probab=98.30 E-value=1.4e-07 Score=80.73 Aligned_cols=121 Identities=22% Similarity=0.225 Sum_probs=92.7
Q ss_pred cCCcHHHHHhhcCCCHHHHHHHHHHHHHhhccChhhHHHHHhcCCHHHHHHHHcCCCHHHHHHHHHHHHHhhcCChHHHH
Q 005044 206 EGGIPPLVELLEFTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSEDSAIHYEAVGVIGNLVHSSPNIKK 285 (717)
Q Consensus 206 ~~~i~~L~~ll~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~ 285 (717)
...++.+..+|+++++.+|..|+++|..+.. + .++.|+.+|+++++.+|..|+++|+++. ++
T Consensus 11 ~~~~~~l~~~L~~~~~~vR~~A~~~L~~~~~--~----------~~~~L~~~L~d~~~~vR~~A~~aL~~~~--~~---- 72 (131)
T 1te4_A 11 SSGLVPRGSHMADENKWVRRDVSTALSRMGD--E----------AFEPLLESLSNEDWRIRGAAAWIIGNFQ--DE---- 72 (131)
T ss_dssp ----------CCSSCCCSSSSCCSSTTSCSS--T----------THHHHHHGGGCSCHHHHHHHHHHHGGGC--SH----
T ss_pred cccHHHHHHHhcCCCHHHHHHHHHHHHHhCc--h----------HHHHHHHHHcCCCHHHHHHHHHHHHhcC--CH----
Confidence 3567889999999999999999988887642 1 2688999999999999999999999984 22
Q ss_pred HHHHcCChHHHHHhhccCChHHHHHHHHHHHHHhcCChhhHHHHHhcCChHHHHHHhcCCCHHHHHHHHHHHHHh
Q 005044 286 EVLAAGALQPVIGLLSSCCSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQSPDVQLREMSAFALGRL 360 (717)
Q Consensus 286 ~~~~~g~l~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~l~~~~~l~~L~~~l~~~~~~v~~~a~~~L~~l 360 (717)
..++.|..++.++++.+|..++++|+++. + ...++.|..+++++++.++..|+++|.++
T Consensus 73 -----~a~~~L~~~L~d~~~~VR~~A~~aL~~~~--~---------~~a~~~L~~~l~d~~~~vr~~A~~aL~~i 131 (131)
T 1te4_A 73 -----RAVEPLIKLLEDDSGFVRSGAARSLEQIG--G---------ERVRAAMEKLAETGTGFARKVAVNYLETH 131 (131)
T ss_dssp -----HHHHHHHHHHHHCCTHHHHHHHHHHHHHC--S---------HHHHHHHHHHTTSCCTHHHHHHHHHGGGC
T ss_pred -----HHHHHHHHHHcCCCHHHHHHHHHHHHHhC--c---------HHHHHHHHHHHhCCCHHHHHHHHHHHHhC
Confidence 23788999999999999999999999984 1 22478899999999999999999988753
No 108
>1ho8_A Vacuolar ATP synthase subunit H; heat repeat, hydrolase; 2.95A {Saccharomyces cerevisiae} SCOP: a.118.1.9
Probab=98.25 E-value=0.00024 Score=72.22 Aligned_cols=315 Identities=16% Similarity=0.185 Sum_probs=182.3
Q ss_pred HHHhhhhhccccchHHHHHHHHHHHHHHHHhhc-Ch---hhHHHHHhCCChHH-HHHhhcCCCCCccccCCCccchHHHh
Q 005044 60 SAQVNVLNTTFSWLEADRAAAKRATHVLAELAK-NE---EVVNWIVEGGAVPA-LVKHLQAPPTSEADRNLKPFEHEVEK 134 (717)
Q Consensus 60 ~~l~~~L~~~~~~~~~~~~~~~~a~~~L~~l~~-~~---~~~~~~~~~g~i~~-L~~lL~~~~~~~~~~~~~~~~~~v~~ 134 (717)
..++.+|... ...++....+..+..+.. ++ .....+.+...... +....... .++-...
T Consensus 80 ~~~l~lL~~~-----~~~d~vqYvL~Li~DlL~~~~~~~~~~~~f~~~~~~~~~l~~~~~~~-----------dd~~~ll 143 (480)
T 1ho8_A 80 IPLIHLLSTS-----DNEDCKKSVQNLIAELLSSDKYGDDTVKFFQEDPKQLEQLFDVSLKG-----------DFQTVLI 143 (480)
T ss_dssp HHHHHHHHSC-----CCHHHHHHHHHHHHHHHHCSSSSHHHHHHHHHCTTHHHHHHHHCSCS-----------SHHHHHH
T ss_pred HHHHHHHhhc-----ChHHHHHHHHHHHHHHHhcCcchHHHHHHHhhCcccchHHHHHHhcc-----------cchHHHH
Confidence 4455555543 122346777778888777 44 33233333322221 22211111 1236667
Q ss_pred HHHHHHHHhc-CChhhHHHHHhCCChH--HHHHHHhccccCCCccchhHHHHHHHHHHHHHhhcCchhhhHHHhcC--Cc
Q 005044 135 GSAFALGLLA-VKPEHQQLIVDNGALS--HLVNLLKRHMDSNCSRAVNSVIRRAADAITNLAHENSSIKTRVRMEG--GI 209 (717)
Q Consensus 135 ~a~~~L~~l~-~~~~~~~~~~~~~~i~--~L~~lL~~~~~~~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~--~i 209 (717)
.+..++..++ .++...+.+- ..+. -++..|...... +.+..++.+|..|.. .+..|..+...+ .+
T Consensus 144 ~a~~l~~ll~~~~~~~~~~l~--~l~~~~~~~~~L~~~~~~-------~~~~i~v~~L~~Ll~-~~~~R~~f~~~~~~~~ 213 (480)
T 1ho8_A 144 SGFNVVSLLVQNGLHNVKLVE--KLLKNNNLINILQNIEQM-------DTCYVCIRLLQELAV-IPEYRDVIWLHEKKFM 213 (480)
T ss_dssp HHHHHHHHHTSTTTCCHHHHH--HHHHCHHHHHHHHCTTCH-------HHHHHHHHHHHHHHT-SHHHHHHHHTTHHHHH
T ss_pred HHHHHHHHHhccCCccHhHHH--HHhhhHHHHHHhccccCC-------chHHHHHHHHHHHhc-chhHHHHHHHcccchh
Confidence 7777766665 2222111110 1112 344455442111 345578888888887 677787776543 25
Q ss_pred HHHHHhhcC-----------------CCHHHHHHHHHHHHHhhccChhhHHHHHhcCCH--HHHHHHHcC-CCHHHHHHH
Q 005044 210 PPLVELLEF-----------------TDTKVQRAAAGALRTLAFKNDENKNQIVECNAL--PTLILMLRS-EDSAIHYEA 269 (717)
Q Consensus 210 ~~L~~ll~~-----------------~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~g~i--~~L~~ll~~-~~~~v~~~a 269 (717)
+.++.+++. ....++..++.+++-|+. +++....+...++. +.|+..++. ..+.|.+-+
T Consensus 214 ~~l~~il~~~~~~~~~~~~~~~~~~~~~~Ql~Y~~ll~iWlLSF-~~~~~~~l~~~~i~~~~~L~~i~k~s~KEKvvRv~ 292 (480)
T 1ho8_A 214 PTLFKILQRATDSQLATRIVATNSNHLGIQLQYHSLLLIWLLTF-NPVFANELVQKYLSDFLDLLKLVKITIKEKVSRLC 292 (480)
T ss_dssp HHHHHHHHHHHC-------------CCHHHHHHHHHHHHHHHTT-SHHHHHHHHTTSHHHHHHHHHHHHHCCSHHHHHHH
T ss_pred HHHHHHHHHhhccccccccccccCCCccHHHHHHHHHHHHHHHc-CHHHHHHHHhcchHHHHHHHHHHHhhccchhHHHH
Confidence 666544321 135678999999999997 66677777766643 566666664 568999999
Q ss_pred HHHHHHhhcCCh----HHHH-HHHHcCChHHHHHhhcc---CChHHHHHHHHHHHHH-------h--------------c
Q 005044 270 VGVIGNLVHSSP----NIKK-EVLAAGALQPVIGLLSS---CCSESQREAALLLGQF-------A--------------A 320 (717)
Q Consensus 270 ~~~L~~l~~~~~----~~~~-~~~~~g~l~~L~~ll~~---~~~~~~~~a~~~L~~l-------~--------------~ 320 (717)
+.+|.|+....+ .... .++..++++ +++.|.. .++++....-.....| + .
T Consensus 293 la~l~Nll~~~~~~~~~~~~~~~~~~~~l~-~l~~L~~rk~~Dedl~edl~~L~e~L~~~~~~ltsfDeY~~El~sG~L~ 371 (480)
T 1ho8_A 293 ISIILQCCSTRVKQHKKVIKQLLLLGNALP-TVQSLSERKYSDEELRQDISNLKEILENEYQELTSFDEYVAELDSKLLC 371 (480)
T ss_dssp HHHHHHTTSSSSTTHHHHHHHHHHHHCHHH-HHHHHHSSCCSSHHHHHHHHHHHHHHHHHHHTCCHHHHHHHHHHHTCCC
T ss_pred HHHHHHHhcccchhhhhHHHHHHHHccchH-HHHHHhhCCCCcHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHhcCCcc
Confidence 999999987652 1122 333344444 5555543 2444443322222111 1 0
Q ss_pred CChhhH---------HHHHh--cCChHHHHHHhcC----------CCHHHHHHHHHHHHHhhcCCCCchh-hHhcCChHH
Q 005044 321 TDSDCK---------VHIVQ--RGAVRPLIEMLQS----------PDVQLREMSAFALGRLAQDMHNQAG-IAHNGGLVP 378 (717)
Q Consensus 321 ~~~~~~---------~~l~~--~~~l~~L~~~l~~----------~~~~v~~~a~~~L~~l~~~~~~~~~-l~~~~~l~~ 378 (717)
-+|..+ ..+.+ ..++..|+++|.+ .++.+..-||.=++.+++..+.... +-+.|+=..
T Consensus 372 WSP~H~se~FW~ENa~kf~e~~~~llk~L~~iL~~~~~~~~~~~s~d~~~laVAc~Digefvr~~P~gr~i~~~lg~K~~ 451 (480)
T 1ho8_A 372 WSPPHVDNGFWSDNIDEFKKDNYKIFRQLIELLQAKVRNGDVNAKQEKIIIQVALNDITHVVELLPESIDVLDKTGGKAD 451 (480)
T ss_dssp CCGGGGCHHHHHHHSGGGSSGGGHHHHHHHHHHHHHHHTTCCCSHHHHHHHHHHHHHHHHHHHHCTTHHHHHHHHSHHHH
T ss_pred cCCCccchhHHHHHHHHHHhcchHHHHHHHHHHhhhccccccccCCCcceEEeecccHHHHHHHCcchhHHHHHcCcHHH
Confidence 011111 01111 2366888899863 3677888899999999986555544 445577777
Q ss_pred HHHhhcCCChhHHHHHHHHHHhcc
Q 005044 379 LLKLLDSKNGSLQHNAAFALYGLA 402 (717)
Q Consensus 379 L~~ll~~~~~~v~~~a~~~L~~l~ 402 (717)
+++++.+.+++|+..|+.++..+.
T Consensus 452 VM~Lm~h~d~~Vr~~AL~avQklm 475 (480)
T 1ho8_A 452 IMELLNHSDSRVKYEALKATQAII 475 (480)
T ss_dssp HHHHTSCSSHHHHHHHHHHHHHHH
T ss_pred HHHHhcCCCHHHHHHHHHHHHHHH
Confidence 999999999999999999988764
No 109
>3v7d_A Suppressor of kinetochore protein 1; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_A* 3mks_A*
Probab=98.19 E-value=7.8e-06 Score=72.02 Aligned_cols=97 Identities=18% Similarity=0.260 Sum_probs=74.7
Q ss_pred cEEEEE-cCeEeehhHHHHhhccHHHHHhhcCCCC----CCCCcceEcCCCCHHHHHHHHHHHhcCc-------------
Q 005044 551 DVTFLV-EGRRFYAHRICLLASSDAFRAMFDGGYR----EKDARDIEIPNIRWEVFELMMRFIYTGS------------- 612 (717)
Q Consensus 551 Dv~~~~-~~~~~~~h~~il~~~s~~f~~~~~~~~~----e~~~~~i~l~~~~~~~~~~~l~~~Yt~~------------- 612 (717)
.|++.. +|..|.+++.+ +..|.+++.|+.+.-. +.....|.+++++..++..+++|+|...
T Consensus 8 ~i~L~SsDG~~F~V~~~v-A~~S~tIk~ml~~~~~~~~~~~~~~~IplpnV~s~iL~kVieyc~~h~~~~~~~~~~~~~~ 86 (169)
T 3v7d_A 8 NVVLVSGEGERFTVDKKI-AERSLLLKNYLNDMGDDDDEDDDEIVMPVPNVRSSVLQKVIEWAEHHRDSNFPDEDDDDSR 86 (169)
T ss_dssp EEEEECTTCCEEEEEHHH-HTTSHHHHHHHHC-----------CEEECTTCCHHHHHHHHHHHHHTTTCCCCC-------
T ss_pred eEEEEeCCCCEEEecHHH-HHHhHHHHHHHHhcCcccccccCCCceeeCCCCHHHHHHHHHHHHHcccCCCccccccccc
Confidence 355544 57999999998 6689999999975322 2233689999999999999999997532
Q ss_pred ------------cccchhhHHHHHHHHHhhChHhHHHHHHHHHHhcCC
Q 005044 613 ------------VDVTLDIAQDLLRAADQYLLEGLKRLCEYTIAQDIS 648 (717)
Q Consensus 613 ------------~~~~~~~~~~ll~~A~~~~~~~l~~~c~~~l~~~i~ 648 (717)
+.++.+++.+|+.+|++|++..|.+.|...+...+.
T Consensus 87 ~~~~i~~wD~~Fl~vd~~~LfeLi~AAnyLdIk~Lldl~c~~vA~~ik 134 (169)
T 3v7d_A 87 KSAPVDSWDREFLKVDQEMLYEIILAANYLNIKPLLDAGCKVVAEMIR 134 (169)
T ss_dssp -CCCCCHHHHHHTCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHT
T ss_pred ccccccHHHHHHHcCCHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHc
Confidence 235667899999999999999999999888765443
No 110
>2qk1_A Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, heat repeat, microtubule plus END, +TIP, protein binding; 1.70A {Saccharomyces cerevisiae}
Probab=98.19 E-value=1.6e-05 Score=76.06 Aligned_cols=183 Identities=8% Similarity=0.067 Sum_probs=128.8
Q ss_pred hHHHHHHHHHHHH-HhhcCchhhhHHHh-cCCcHHHHHhh-cCCCHHHHHHHHHHHHHhhccCh--hhHHHHHhcCCHHH
Q 005044 179 NSVIRRAADAITN-LAHENSSIKTRVRM-EGGIPPLVELL-EFTDTKVQRAAAGALRTLAFKND--ENKNQIVECNALPT 253 (717)
Q Consensus 179 ~~~~~~a~~~L~~-l~~~~~~~~~~~~~-~~~i~~L~~ll-~~~~~~v~~~a~~~L~~L~~~~~--~~~~~~~~~g~i~~ 253 (717)
|.-+..++..|.. ++.+.+........ ...+..|...+ ++.+..++..|+.+|..++.+-. ........ -+++.
T Consensus 30 w~eRk~al~~L~~~~~~~~~~i~~~~~~~~~~~~~L~~~l~~D~n~~v~~~A~~al~~la~~l~~~~f~~~y~~-~llp~ 108 (249)
T 2qk1_A 30 WKDRVEALEEFWDSVLSQTKKLKSTSQNYSNLLGIYGHIIQKDANIQAVALAAQSVELICDKLKTPGFSKDYVS-LVFTP 108 (249)
T ss_dssp HHHHHHHHHHHHHHTGGGCCCBCCTTCCCHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHHCTTTSCHHHHH-HHHHH
T ss_pred HHHHHHHHHHHHHHHHhcCCccccCcccHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHhcccccccHHHHH-HHHHH
Confidence 5888889999999 87654432200000 12356777788 78899999999999999986322 22102221 26889
Q ss_pred HHHHHcCCCHHHHHHHHHHHHHhhcCChHHHHHHHHcCChHHHHHhhccCChHHHHHHHHHHHHHhcCChh---hHHHHH
Q 005044 254 LILMLRSEDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLSSCCSESQREAALLLGQFAATDSD---CKVHIV 330 (717)
Q Consensus 254 L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~l~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~---~~~~l~ 330 (717)
++..+.+..+.|+..+..++..++...+.......-..+++.|...+.+.++.++..++.+|..++...+. .....+
T Consensus 109 ll~~l~dkk~~V~~aa~~al~~i~~~~~~~~~~~~l~~ll~~l~~~l~~k~~~vk~~al~~l~~~~~~~~~~~~~l~~~l 188 (249)
T 2qk1_A 109 LLDRTKEKKPSVIEAIRKALLTICKYYDPLASSGRNEDMLKDILEHMKHKTPQIRMECTQLFNASMKEEKDGYSTLQRYL 188 (249)
T ss_dssp HHHGGGCCCHHHHHHHHHHHHHHHHHSCTTCTTCTTHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHCCSCSHHHHHHH
T ss_pred HHHHHcCCCHHHHHHHHHHHHHHHHHccccccCCcHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHcCCcchhHHHHH
Confidence 99999999999999999998888753210000000012467788889999999999999999998754432 111222
Q ss_pred hcCChHHHHHHhcCCCHHHHHHHHHHHHHhhc
Q 005044 331 QRGAVRPLIEMLQSPDVQLREMSAFALGRLAQ 362 (717)
Q Consensus 331 ~~~~l~~L~~~l~~~~~~v~~~a~~~L~~l~~ 362 (717)
...++|.|.+++.+.++.+|..|..++..++.
T Consensus 189 ~~~iip~l~~~l~D~~~~VR~aA~~~l~~i~~ 220 (249)
T 2qk1_A 189 KDEVVPIVIQIVNDTQPAIRTIGFESFAILIK 220 (249)
T ss_dssp TTTHHHHHHHHHTCSSHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHH
Confidence 25789999999999999999999999999985
No 111
>3drz_A BTB/POZ domain-containing protein KCTD5; potassium channel domain T1, pentamer, unkno function; 1.90A {Homo sapiens}
Probab=98.19 E-value=8e-06 Score=65.92 Aligned_cols=95 Identities=17% Similarity=0.253 Sum_probs=76.8
Q ss_pred ccEEEEEcCeEeehhHHHHhhcc-HHHHHhhcCCCC----CCCCcceEcCCCCHHHHHHHHHHHhcCccccchhh-HHHH
Q 005044 550 SDVTFLVEGRRFYAHRICLLASS-DAFRAMFDGGYR----EKDARDIEIPNIRWEVFELMMRFIYTGSVDVTLDI-AQDL 623 (717)
Q Consensus 550 ~Dv~~~~~~~~~~~h~~il~~~s-~~f~~~~~~~~~----e~~~~~i~l~~~~~~~~~~~l~~~Yt~~~~~~~~~-~~~l 623 (717)
.-|.+.|+|..|...+..|+... .+|.+||.+++. ....+.+.+ |-+|..|+.+|+|+.+|.+.++.+. ...+
T Consensus 6 ~~v~LNVGG~~f~t~~~TL~~~p~s~L~~~~~~~~~~~~~~d~~~~~fi-DRdp~~F~~IL~~lr~g~l~~p~~~~~~~l 84 (107)
T 3drz_A 6 KWVRLNVGGTYFLTTRQTLCRDPKSFLYRLCQADPDLDSDKDETGAYLI-DRDPTYFGPVLNYLRHGKLVINKDLAEEGV 84 (107)
T ss_dssp CEEEEEETTEEEEEEHHHHTSSTTSHHHHHHTTCGGGGGGBCTTSCEEE-CSCHHHHHHHHHHHHHSCCCCCTTSCHHHH
T ss_pred CEEEEEECCEEEEECHHHHhcCCCcchhHHHhcCCCCCcCCCCCceEEe-cCChHHHHHHHHHhCCCeeCCCCCCCHHHH
Confidence 34788999999999999999775 478899876521 112345555 7899999999999999999876543 5789
Q ss_pred HHHHHhhChHhHHHHHHHHHHh
Q 005044 624 LRAADQYLLEGLKRLCEYTIAQ 645 (717)
Q Consensus 624 l~~A~~~~~~~l~~~c~~~l~~ 645 (717)
+.-|.+|+++.|++.|.+.+.+
T Consensus 85 ~~Ea~fy~l~~L~~~l~~~i~~ 106 (107)
T 3drz_A 85 LEEAEFYNITSLIKLVKDKIRE 106 (107)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHHHhc
Confidence 9999999999999999987754
No 112
>1wa5_C Importin alpha RE-exporter; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1z3h_A
Probab=98.09 E-value=0.00012 Score=85.49 Aligned_cols=379 Identities=11% Similarity=0.025 Sum_probs=204.8
Q ss_pred HHHHHHHHHHHHHHhhc------------ChhhHHHHHhCCChHHHHHhhcCCCCCccccCCCccchHHHhHHHHHHHHh
Q 005044 76 DRAAAKRATHVLAELAK------------NEEVVNWIVEGGAVPALVKHLQAPPTSEADRNLKPFEHEVEKGSAFALGLL 143 (717)
Q Consensus 76 ~~~~~~~a~~~L~~l~~------------~~~~~~~~~~~g~i~~L~~lL~~~~~~~~~~~~~~~~~~v~~~a~~~L~~l 143 (717)
+..+|..|+-.|.+... +++.+.. ++ ..|+..+...+. .+|.+++.+++.+
T Consensus 50 ~~~vR~~A~i~lkn~i~~~w~~~~~~~~l~~~~k~~-ik----~~ll~~l~~~~~------------~ir~~l~~~ia~i 112 (960)
T 1wa5_C 50 PLSTRLAGALFFKNFIKRKWVDENGNHLLPANNVEL-IK----KEIVPLMISLPN------------NLQVQIGEAISSI 112 (960)
T ss_dssp CHHHHHHHHHHHHHHHHHHSBCSSSCBSSCHHHHHH-HH----HHHHHHHHHSCH------------HHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHhcCCCcccCCCCCHHHHHH-HH----HHHHHHHHhCCH------------HHHHHHHHHHHHH
Confidence 44578889999988654 1222222 22 234444443333 8999999999999
Q ss_pred c--CChhhHHHHHhCCChHHHHHHHhccccCCCccchhHHHHHHHHHHHHHhhcCc------hhhhHH--HhcCCcHHHH
Q 005044 144 A--VKPEHQQLIVDNGALSHLVNLLKRHMDSNCSRAVNSVIRRAADAITNLAHENS------SIKTRV--RMEGGIPPLV 213 (717)
Q Consensus 144 ~--~~~~~~~~~~~~~~i~~L~~lL~~~~~~~~~~~~~~~~~~a~~~L~~l~~~~~------~~~~~~--~~~~~i~~L~ 213 (717)
+ +-|+. -.+.++.|+..+.+.+. ..+..++.+|..++.... +.+..+ .-....+.++
T Consensus 113 a~~d~p~~-----Wp~ll~~L~~~l~s~~~--------~~~~~aL~~l~~i~~~~~~~~~~~~~~~~l~~~l~~~~~~ll 179 (960)
T 1wa5_C 113 ADSDFPDR-----WPTLLSDLASRLSNDDM--------VTNKGVLTVAHSIFKRWRPLFRSDELFLEIKLVLDVFTAPFL 179 (960)
T ss_dssp HHHHSTTT-----CTTHHHHHHTTCCSSCT--------THHHHHHHHHHHHHGGGTTSCCCHHHHHHHHHHHHHHHHHHH
T ss_pred HHhhCccc-----hhHHHHHHHHHhCCCCH--------HHHHHHHHHHHHHHHHHHHhhcChHHHHHHHHHHHHHHHHHH
Confidence 8 23310 13456777777765433 677889999999887432 111111 0112233333
Q ss_pred Hh-------hcCCCH---------HHHHHHHHHHHHhhcc-ChhhHHHHHhcCCHHHHHHHHcCC------C--------
Q 005044 214 EL-------LEFTDT---------KVQRAAAGALRTLAFK-NDENKNQIVECNALPTLILMLRSE------D-------- 262 (717)
Q Consensus 214 ~l-------l~~~~~---------~v~~~a~~~L~~L~~~-~~~~~~~~~~~g~i~~L~~ll~~~------~-------- 262 (717)
.+ +.++.. .+...++++++.+... .+....... ...++.+.+++... +
T Consensus 180 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~k~~~~l~~~~~~~~~~~~~-~~~~~~~~~~l~~~~p~~~~d~d~~~~~~ 258 (960)
T 1wa5_C 180 NLLKTVDEQITANENNKASLNILFDVLLVLIKLYYDFNCQDIPEFFEDNI-QVGMGIFHKYLSYSNPLLEDPDETEHASV 258 (960)
T ss_dssp HHHHHHHHHTTCCC--CHHHHHHHHHHHHHHHHHHHHHSSCCCHHHHHTH-HHHHHHHHHHHSCCSCCCC------CCCH
T ss_pred HHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHhhccchHHHHHHH-HHHHHHHHHHHcCCCCcccCCcccccccH
Confidence 32 433221 3334467777776531 122111100 12345555555321 1
Q ss_pred -HHHHHHHHHHHHHhhcCChHHHHHHHHcCChHHHHHhhc-----cCChHHHHHHHHHHHHHhcCChhhHHHHHhcCChH
Q 005044 263 -SAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLS-----SCCSESQREAALLLGQFAATDSDCKVHIVQRGAVR 336 (717)
Q Consensus 263 -~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~l~~L~~ll~-----~~~~~~~~~a~~~L~~l~~~~~~~~~~l~~~~~l~ 336 (717)
..++..++.++..+....+..-... -..++..+.+.+. .....++..++..+..++.. +.....+...+.++
T Consensus 259 ~~~vk~~~~~~l~~l~~~~~~~f~~~-~~~~~~~~~~~l~~~~~~~~~~~~~~~al~fl~~~~~~-~~~~~~~~~~~~l~ 336 (960)
T 1wa5_C 259 LIKVKSSIQELVQLYTTRYEDVFGPM-INEFIQITWNLLTSISNQPKYDILVSKSLSFLTAVTRI-PKYFEIFNNESAMN 336 (960)
T ss_dssp HHHHHHHHHHHHHHHHHHCHHHHHHH-HHHHHHHHHHHHHHCCSCTTSHHHHHHHHHHHHHHHTS-HHHHGGGCSHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHhcCCCcCcHHHHHHHHHHHHHHhCc-HhHHHHHcCchHHH
Confidence 2467888888888875544322111 1234555566564 23467888888888887642 22111111112233
Q ss_pred HHH-----HHhc---------CCC--------------HHHHHHHHHHHHHhhcCCCCchhhHhcCChHHHHHhhc----
Q 005044 337 PLI-----EMLQ---------SPD--------------VQLREMSAFALGRLAQDMHNQAGIAHNGGLVPLLKLLD---- 384 (717)
Q Consensus 337 ~L~-----~~l~---------~~~--------------~~v~~~a~~~L~~l~~~~~~~~~l~~~~~l~~L~~ll~---- 384 (717)
.++ ..+. ..+ ...|..|..+|..|+...+ ..+ -...++.+.+.+.
T Consensus 337 ~li~~~i~~~m~~~~~d~e~w~~dp~e~i~~d~e~~d~~s~R~aa~~~L~~l~~~~~--~~v-~~~~l~~i~~~l~~~~~ 413 (960)
T 1wa5_C 337 NITEQIILPNVTLREEDVELFEDDPIEYIRRDLEGSDTDTRRRACTDFLKELKEKNE--VLV-TNIFLAHMKGFVDQYMS 413 (960)
T ss_dssp HHHHHTHHHHHSCCGGGTTTTTTCHHHHHHHHHHC----CHHHHHHHHHHHHHHHCH--HHH-HHHHHHHHHHHHHHHHC
T ss_pred HHHHHHhHHhcCCCHHHHHHHhcCHHHHHHhccCcccccCcHHHHHHHHHHHHHHcc--hhH-HHHHHHHHHHHHHHhcc
Confidence 333 2221 011 1367788888888886432 111 1112333344444
Q ss_pred --CCChhHHHHHHHHHHhccCCCcchHHHHHhcCc--cccccchhHHhhhHHHHHHHHHHHHHHhhhchHHHHHHHHhhc
Q 005044 385 --SKNGSLQHNAAFALYGLADNEDNVADFIRVGGV--QKLQDGEFIVQATKDCVAKTLKRLEEKIHGRVLNHLLYLMRVA 460 (717)
Q Consensus 385 --~~~~~v~~~a~~~L~~l~~~~~~~~~l~~~~~i--~~L~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~L~~ll~~~ 460 (717)
+.++..++.|+.+++.++.....+. .|.- ..+.+. . .-+...++..+.++
T Consensus 414 ~~~~~w~~reaal~algaia~~~~~~~----~~~~~~~~~~~l----~------------------~~l~~~v~p~l~~~ 467 (960)
T 1wa5_C 414 DPSKNWKFKDLYIYLFTALAINGNITN----AGVSSTNNLLNV----V------------------DFFTKEIAPDLTSN 467 (960)
T ss_dssp ----CHHHHHHHHHHHHHHHBSSCCBT----TBCCCBCTTCCH----H------------------HHHHHHTHHHHHCS
T ss_pred CcchhHHHHHHHHHHHHHHHHHhcccc----CCcccccccccH----H------------------HHHHHHhHHHhcCC
Confidence 5678899999999999975321110 0100 000010 0 00122344556666
Q ss_pred ---chhHHHHHHHHHHhccCCCCCceeeecCCCHHHHHHHhcCCCchhhhhhHHHHHHhhhc
Q 005044 461 ---EKGVQRRVALALAHLCSPDDQRTIFIDGGGLELLLGLLGSTNPKQQLDGAVALFKLANK 519 (717)
Q Consensus 461 ---~~~v~~~a~~aL~~l~~~~~~~~~~~~~~~l~~L~~ll~~~~~~v~~~a~~~l~~L~~~ 519 (717)
++.+|..++++|+.++..-. .. .-...++.+++.+.++++.|+..|+.++.+++..
T Consensus 468 ~~~~p~vr~~a~~~lg~~~~~~~-~~--~l~~~l~~l~~~L~d~~~~V~~~A~~Al~~~~~~ 526 (960)
T 1wa5_C 468 NIPHIILRVDAIKYIYTFRNQLT-KA--QLIELMPILATFLQTDEYVVYTYAAITIEKILTI 526 (960)
T ss_dssp SCSCHHHHHHHHHHHHHTGGGSC-HH--HHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTTC
T ss_pred CCCCceehHHHHHHHHHHHhhCC-HH--HHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHhc
Confidence 89999999999999987532 11 1234577788888888899999999999999874
No 113
>1wa5_C Importin alpha RE-exporter; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1z3h_A
Probab=98.04 E-value=0.0014 Score=76.33 Aligned_cols=382 Identities=10% Similarity=0.089 Sum_probs=198.7
Q ss_pred HHHHHHHHHHHHHhhcC--hhhHHHHHhCCChHHHHHhhcCCCCCccccCCCccchHHHhHHHHHHHHhcCCh-------
Q 005044 77 RAAAKRATHVLAELAKN--EEVVNWIVEGGAVPALVKHLQAPPTSEADRNLKPFEHEVEKGSAFALGLLAVKP------- 147 (717)
Q Consensus 77 ~~~~~~a~~~L~~l~~~--~~~~~~~~~~g~i~~L~~lL~~~~~~~~~~~~~~~~~~v~~~a~~~L~~l~~~~------- 147 (717)
..++.....++..++.. |+.. -+.++.|++++++++. ..+..++.+|..++..-
T Consensus 99 ~~ir~~l~~~ia~ia~~d~p~~W-----p~ll~~L~~~l~s~~~------------~~~~~aL~~l~~i~~~~~~~~~~~ 161 (960)
T 1wa5_C 99 NNLQVQIGEAISSIADSDFPDRW-----PTLLSDLASRLSNDDM------------VTNKGVLTVAHSIFKRWRPLFRSD 161 (960)
T ss_dssp HHHHHHHHHHHHHHHHHHSTTTC-----TTHHHHHHTTCCSSCT------------THHHHHHHHHHHHHGGGTTSCCCH
T ss_pred HHHHHHHHHHHHHHHHhhCccch-----hHHHHHHHHHhCCCCH------------HHHHHHHHHHHHHHHHHHHhhcCh
Confidence 34566666677766652 2111 2457888888877655 67888999999998321
Q ss_pred hhHHHH--HhCCChHHHHHHHh-------ccccCC-CccchhHHHHHHHHHHHHHhhcC-chh-hhHHHhcCCcHHHHHh
Q 005044 148 EHQQLI--VDNGALSHLVNLLK-------RHMDSN-CSRAVNSVIRRAADAITNLAHEN-SSI-KTRVRMEGGIPPLVEL 215 (717)
Q Consensus 148 ~~~~~~--~~~~~i~~L~~lL~-------~~~~~~-~~~~~~~~~~~a~~~L~~l~~~~-~~~-~~~~~~~~~i~~L~~l 215 (717)
+.+..+ .-....+.++.++. ...... ......++...++.++.++...+ +.. ...+ ...++.+..+
T Consensus 162 ~~~~~l~~~l~~~~~~ll~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~k~~~~l~~~~~~~~~~~~~--~~~~~~~~~~ 239 (960)
T 1wa5_C 162 ELFLEIKLVLDVFTAPFLNLLKTVDEQITANENNKASLNILFDVLLVLIKLYYDFNCQDIPEFFEDNI--QVGMGIFHKY 239 (960)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCC--CHHHHHHHHHHHHHHHHHHHHHSSCCCHHHHHTH--HHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHhhccchHHHHHHH--HHHHHHHHHH
Confidence 222211 11122444444432 211100 00001134444666676655321 211 1100 1223444554
Q ss_pred hcC------CC---------HHHHHHHHHHHHHhhccChhhHHHHHhcCCHHHHHHHHc-----CCCHHHHHHHHHHHHH
Q 005044 216 LEF------TD---------TKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLR-----SEDSAIHYEAVGVIGN 275 (717)
Q Consensus 216 l~~------~~---------~~v~~~a~~~L~~L~~~~~~~~~~~~~~g~i~~L~~ll~-----~~~~~v~~~a~~~L~~ 275 (717)
+.. .+ +.++..++.+|..+....++.-.... ..+++..++.+. ..++.++..++..+..
T Consensus 240 l~~~~p~~~~d~d~~~~~~~~~vk~~~~~~l~~l~~~~~~~f~~~~-~~~~~~~~~~l~~~~~~~~~~~~~~~al~fl~~ 318 (960)
T 1wa5_C 240 LSYSNPLLEDPDETEHASVLIKVKSSIQELVQLYTTRYEDVFGPMI-NEFIQITWNLLTSISNQPKYDILVSKSLSFLTA 318 (960)
T ss_dssp HSCCSCCCC------CCCHHHHHHHHHHHHHHHHHHHCHHHHHHHH-HHHHHHHHHHHHHCCSCTTSHHHHHHHHHHHHH
T ss_pred HcCCCCcccCCcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHhcCCCcCcHHHHHHHHHHHHH
Confidence 432 11 35778889999888754433222112 134555566554 3467889999999998
Q ss_pred hhcCChHHHHHHHHcCChHHHH-----Hhhc-----------------------cCChHHHHHHHHHHHHHhcCChhhHH
Q 005044 276 LVHSSPNIKKEVLAAGALQPVI-----GLLS-----------------------SCCSESQREAALLLGQFAATDSDCKV 327 (717)
Q Consensus 276 l~~~~~~~~~~~~~~g~l~~L~-----~ll~-----------------------~~~~~~~~~a~~~L~~l~~~~~~~~~ 327 (717)
++.. +.....+.....++.++ ..+. ++....|..|..+|..++...++.
T Consensus 319 ~~~~-~~~~~~~~~~~~l~~li~~~i~~~m~~~~~d~e~w~~dp~e~i~~d~e~~d~~s~R~aa~~~L~~l~~~~~~~-- 395 (960)
T 1wa5_C 319 VTRI-PKYFEIFNNESAMNNITEQIILPNVTLREEDVELFEDDPIEYIRRDLEGSDTDTRRRACTDFLKELKEKNEVL-- 395 (960)
T ss_dssp HHTS-HHHHGGGCSHHHHHHHHHHTHHHHHSCCGGGTTTTTTCHHHHHHHHHHC----CHHHHHHHHHHHHHHHCHHH--
T ss_pred HhCc-HhHHHHHcCchHHHHHHHHHhHHhcCCCHHHHHHHhcCHHHHHHhccCcccccCcHHHHHHHHHHHHHHcchh--
Confidence 8643 22111110011222222 2221 111246677777888887543321
Q ss_pred HHHhcCChHHHHHHhc------CCCHHHHHHHHHHHHHhhcCCCCchhhHhc-----CChHH----HHHhhcCC---Chh
Q 005044 328 HIVQRGAVRPLIEMLQ------SPDVQLREMSAFALGRLAQDMHNQAGIAHN-----GGLVP----LLKLLDSK---NGS 389 (717)
Q Consensus 328 ~l~~~~~l~~L~~~l~------~~~~~v~~~a~~~L~~l~~~~~~~~~l~~~-----~~l~~----L~~ll~~~---~~~ 389 (717)
+. ..+++.+.+.+. +.+...++.|+.+++.++.+......-... ...+. ++..+.+. ++.
T Consensus 396 -v~-~~~l~~i~~~l~~~~~~~~~~w~~reaal~algaia~~~~~~~~~~~~~~~~~~l~~~l~~~v~p~l~~~~~~~p~ 473 (960)
T 1wa5_C 396 -VT-NIFLAHMKGFVDQYMSDPSKNWKFKDLYIYLFTALAINGNITNAGVSSTNNLLNVVDFFTKEIAPDLTSNNIPHII 473 (960)
T ss_dssp -HH-HHHHHHHHHHHHHHHC----CHHHHHHHHHHHHHHHBSSCCBTTBCCCBCTTCCHHHHHHHHTHHHHHCSSCSCHH
T ss_pred -HH-HHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHHHhccccCCcccccccccHHHHHHHHhHHHhcCCCCCCce
Confidence 11 113444444454 567789999999999998642211100000 11121 23334555 889
Q ss_pred HHHHHHHHHHhccCCCcchHHHHHhcCccccccchhHHhhhHHHHHHHHHHHHHHhhhchHHHHHHHHhhcchhHHHHHH
Q 005044 390 LQHNAAFALYGLADNEDNVADFIRVGGVQKLQDGEFIVQATKDCVAKTLKRLEEKIHGRVLNHLLYLMRVAEKGVQRRVA 469 (717)
Q Consensus 390 v~~~a~~~L~~l~~~~~~~~~l~~~~~i~~L~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~L~~ll~~~~~~v~~~a~ 469 (717)
+|..++|++..++..- . ... ...+++.+++.|.++++.|+..|+
T Consensus 474 vr~~a~~~lg~~~~~~-~-~~~----------------------------------l~~~l~~l~~~L~d~~~~V~~~A~ 517 (960)
T 1wa5_C 474 LRVDAIKYIYTFRNQL-T-KAQ----------------------------------LIELMPILATFLQTDEYVVYTYAA 517 (960)
T ss_dssp HHHHHHHHHHHTGGGS-C-HHH----------------------------------HHHHHHHHHHHTTCSCHHHHHHHH
T ss_pred ehHHHHHHHHHHHhhC-C-HHH----------------------------------HHHHHHHHHHHhCCCChhHHHHHH
Confidence 9999999999998532 1 111 112677788888888899999999
Q ss_pred HHHHhccCCCC---------Cceeee--cCCCHHHHHHHhcCCC-----chhhhhhHHHHHHhhhc
Q 005044 470 LALAHLCSPDD---------QRTIFI--DGGGLELLLGLLGSTN-----PKQQLDGAVALFKLANK 519 (717)
Q Consensus 470 ~aL~~l~~~~~---------~~~~~~--~~~~l~~L~~ll~~~~-----~~v~~~a~~~l~~L~~~ 519 (717)
.+|.+++...+ .+..+. -...++.|..+++... ......+..++..++..
T Consensus 518 ~Al~~~~~~~~~~~~~~~~~~~~~l~p~l~~ll~~L~~ll~~~~~~~~~~~~~e~l~~al~~vv~~ 583 (960)
T 1wa5_C 518 ITIEKILTIRESNTSPAFIFHKEDISNSTEILLKNLIALILKHGSSPEKLAENEFLMRSIFRVLQT 583 (960)
T ss_dssp HHHHHHTTCBSCSSSCCBSSCGGGTTTTHHHHHHHHHHHHHTTCCCHHHHTSCHHHHHHHHHHHHH
T ss_pred HHHHHHHhcccccccccccccHHHhhhhHHHHHHHHHHHHHhccCCCCcccccHHHHHHHHHHHHH
Confidence 99999986421 111110 1223445556666531 11345666777666543
No 114
>3dad_A FH1/FH2 domain-containing protein 1; formin, FHOD1, GTPase-binding domain, ubiquitin-superfold, armadillo repeats, actin-binding, coiled coil; 2.30A {Homo sapiens}
Probab=97.85 E-value=0.00063 Score=65.61 Aligned_cols=154 Identities=15% Similarity=0.146 Sum_probs=121.4
Q ss_pred HHHHhhcCCCHHHHHHHHHHHHHhhccChhhHHHHHhcCCHHHHHHHHcCCCHHHHHHHHHHHHHhhcCChHHHHHHH-H
Q 005044 211 PLVELLEFTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSEDSAIHYEAVGVIGNLVHSSPNIKKEVL-A 289 (717)
Q Consensus 211 ~L~~ll~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~-~ 289 (717)
.++..|.+++.+.++.++.-|..+...+.+....++..+++..|+......+.+.+..+++++.++....... ..++ .
T Consensus 122 ~iiekL~~~~~~~lr~aLfsLk~~~q~D~~Fa~EFI~~~GL~~Li~vi~~~~gN~q~Y~L~AL~~LM~~v~Gm-~gvvs~ 200 (339)
T 3dad_A 122 AILEKLYSSSGPELRRSLFSLKQIFQEDKDLVPEFVHSEGLSCLIRVGAAADHNYQSYILRALGQLMLFVDGM-LGVVAH 200 (339)
T ss_dssp HHHHHHHHCCHHHHHHHHHHHHHHHHTCTTHHHHHHHTTHHHHHHHHHTTSCHHHHHHHHHHHHHHTTSHHHH-HHHHHC
T ss_pred HHHHHHhcCCcHHHHHHHHHHHHHhhcchHHHHHHHHhccHHHHHHHHHhcChHHHHHHHHHHHHHHhccccc-cchhCC
Confidence 4556666777888899999999855558899999999999999999999999999999999999998654433 3444 4
Q ss_pred cCChHHHHHhhccCChHHHHHHHHHHHHHhcCChhhHHHHHhc----------CChHHHHHHhc---CCCHHHHHHHHHH
Q 005044 290 AGALQPVIGLLSSCCSESQREAALLLGQFAATDSDCKVHIVQR----------GAVRPLIEMLQ---SPDVQLREMSAFA 356 (717)
Q Consensus 290 ~g~l~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~l~~~----------~~l~~L~~~l~---~~~~~v~~~a~~~ 356 (717)
...|..+..++.+....+.+.|+..|..++..++.+...+.+. .-+..|+.+|+ +.+.+++.++...
T Consensus 201 ~~fI~~lyslv~s~~~~V~k~AL~LL~v~V~~se~~~~lv~~av~~v~~~~~~~p~~~Lv~~L~~~~~~D~elq~~amtL 280 (339)
T 3dad_A 201 SDTIQWLYTLCASLSRLVVKTALKLLLVFVEYSENNAPLFIRAVNSVASTTGAPPWANLVSILEEKNGADPELLVYTVTL 280 (339)
T ss_dssp HHHHHHHHHGGGCSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHCCCTTHHHHHHHTTTTSCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCccHHHHHHHHHHHHHHHccCcccchHHHHHHHHhhhccCCCcHHHHHHHHhccCCCCHHHHHHHHHH
Confidence 5678888999998888999999999999987665444333221 24788999997 6799999998888
Q ss_pred HHHhhcCCC
Q 005044 357 LGRLAQDMH 365 (717)
Q Consensus 357 L~~l~~~~~ 365 (717)
+..+....+
T Consensus 281 IN~lL~~ap 289 (339)
T 3dad_A 281 INKTLAALP 289 (339)
T ss_dssp HHHHHHHCS
T ss_pred HHHHHhcCC
Confidence 877765433
No 115
>3dad_A FH1/FH2 domain-containing protein 1; formin, FHOD1, GTPase-binding domain, ubiquitin-superfold, armadillo repeats, actin-binding, coiled coil; 2.30A {Homo sapiens}
Probab=97.83 E-value=0.00076 Score=65.06 Aligned_cols=184 Identities=17% Similarity=0.158 Sum_probs=131.6
Q ss_pred HHHHHHHhccccCCCccchhHHHHHHHHHHHHHhhcCchhhhHHHhcCCcHHHHHhhcCCCHHHHHHHHHHHHHhhccCh
Q 005044 160 SHLVNLLKRHMDSNCSRAVNSVIRRAADAITNLAHENSSIKTRVRMEGGIPPLVELLEFTDTKVQRAAAGALRTLAFKND 239 (717)
Q Consensus 160 ~~L~~lL~~~~~~~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~L~~~~~ 239 (717)
..+++-|.+.+. ..++.++..|..+...+......|+..+|+..|+......+...+..++.+|.+|.. ..
T Consensus 121 ~~iiekL~~~~~--------~~lr~aLfsLk~~~q~D~~Fa~EFI~~~GL~~Li~vi~~~~gN~q~Y~L~AL~~LM~-~v 191 (339)
T 3dad_A 121 NAILEKLYSSSG--------PELRRSLFSLKQIFQEDKDLVPEFVHSEGLSCLIRVGAAADHNYQSYILRALGQLML-FV 191 (339)
T ss_dssp HHHHHHHHHCCH--------HHHHHHHHHHHHHHHTCTTHHHHHHHTTHHHHHHHHHTTSCHHHHHHHHHHHHHHTT-SH
T ss_pred HHHHHHHhcCCc--------HHHHHHHHHHHHHhhcchHHHHHHHHhccHHHHHHHHHhcChHHHHHHHHHHHHHHh-cc
Confidence 345555655444 678889999998666678888889999999999999999999999999999999986 33
Q ss_pred hhHHHHH-hcCCHHHHHHHHcCCCHHHHHHHHHHHHHhhcCChHHHHHHHHc----------CChHHHHHhhc---cCCh
Q 005044 240 ENKNQIV-ECNALPTLILMLRSEDSAIHYEAVGVIGNLVHSSPNIKKEVLAA----------GALQPVIGLLS---SCCS 305 (717)
Q Consensus 240 ~~~~~~~-~~g~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~----------g~l~~L~~ll~---~~~~ 305 (717)
.....++ ....+..+..++.+.+..|...|+..|..++..++.....+.++ .-+..++.+|. +.+.
T Consensus 192 ~Gm~gvvs~~~fI~~lyslv~s~~~~V~k~AL~LL~v~V~~se~~~~lv~~av~~v~~~~~~~p~~~Lv~~L~~~~~~D~ 271 (339)
T 3dad_A 192 DGMLGVVAHSDTIQWLYTLCASLSRLVVKTALKLLLVFVEYSENNAPLFIRAVNSVASTTGAPPWANLVSILEEKNGADP 271 (339)
T ss_dssp HHHHHHHHCHHHHHHHHHGGGCSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHCCCTTHHHHHHHTTTTSCCH
T ss_pred ccccchhCCHHHHHHHHHHHcCccHHHHHHHHHHHHHHHccCcccchHHHHHHHHhhhccCCCcHHHHHHHHhccCCCCH
Confidence 4443333 45678889999998899999999999999987765443333221 13788999997 5678
Q ss_pred HHHHHHHHHHHHHhcCCh--h----hHHHHHhcCChHHHHHHhcCC--CHHHHHH
Q 005044 306 ESQREAALLLGQFAATDS--D----CKVHIVQRGAVRPLIEMLQSP--DVQLREM 352 (717)
Q Consensus 306 ~~~~~a~~~L~~l~~~~~--~----~~~~l~~~~~l~~L~~~l~~~--~~~v~~~ 352 (717)
+++..+...+-.+....+ + ....+.+.|+-..+...++.. ++++++.
T Consensus 272 elq~~amtLIN~lL~~apd~d~~~di~d~Le~~gi~~~i~r~l~~~~~~~~l~~Q 326 (339)
T 3dad_A 272 ELLVYTVTLINKTLAALPDQDSFYDVTDALEQQGMEALVQRHLGTAGTDVDLRTQ 326 (339)
T ss_dssp HHHHHHHHHHHHHHHHCSSHHHHHHHHHHHHHTTHHHHHHHHHSCTTSCHHHHHH
T ss_pred HHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHccHHHHHHHHHhccCCCHHHHHH
Confidence 888887776655543322 2 122344455556666667663 6665543
No 116
>1vcb_B Protein (elongin C); tumor suppressor, cancer, ubiquitin, beta sandwich, transcription, transcriptional elongation; 2.70A {Homo sapiens} SCOP: d.42.1.1
Probab=97.82 E-value=4e-05 Score=61.98 Aligned_cols=80 Identities=21% Similarity=0.356 Sum_probs=61.6
Q ss_pred EEEE-EcCeEeehhHHHHhhccHHHHHhhcC--CCCCCCCcceEcCCCCHHHHHHHHHHHhcCc-----------cccch
Q 005044 552 VTFL-VEGRRFYAHRICLLASSDAFRAMFDG--GYREKDARDIEIPNIRWEVFELMMRFIYTGS-----------VDVTL 617 (717)
Q Consensus 552 v~~~-~~~~~~~~h~~il~~~s~~f~~~~~~--~~~e~~~~~i~l~~~~~~~~~~~l~~~Yt~~-----------~~~~~ 617 (717)
|++. .+|..|.+.+.+ +..|..++.|+.+ .+.|+....|++++++..+++.+++|+|... ..++.
T Consensus 19 v~L~SsDG~~F~V~~~~-A~~S~tIk~ml~~~~~~~e~~~~~IplpnV~s~iL~kVieyc~~h~~~~~~~~~i~~w~vd~ 97 (112)
T 1vcb_B 19 VKLISSDGHEFIVKREH-ALTSGTIKAMLSGPGQFAENETNEVNFREIPSHVLSKVCMYFTYKVRYTNSSTEIPEFPIAP 97 (112)
T ss_dssp EEEECTTSCEEEEEHHH-HHTSHHHHHHSSCC--------CEEECSSCCHHHHHHHHHHHHHHHHHSSCSSCCCCCCCCH
T ss_pred EEEEcCCCCEEEECHHH-HHHhHHHHHHHHhcCCcccccCCceeCCCCCHHHHHHHHHHHHHhhhccCCcCCCCCcccCH
Confidence 5555 368999999995 5699999999984 3456556789999999999999999997532 25778
Q ss_pred hhHHHHHHHHHhhCh
Q 005044 618 DIAQDLLRAADQYLL 632 (717)
Q Consensus 618 ~~~~~ll~~A~~~~~ 632 (717)
+++.+|+.+|+++++
T Consensus 98 ~~lfeLi~AAnyLdI 112 (112)
T 1vcb_B 98 EIALELLMAANFLDC 112 (112)
T ss_dssp HHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHhCc
Confidence 899999999999875
No 117
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=97.80 E-value=0.0042 Score=70.02 Aligned_cols=246 Identities=20% Similarity=0.199 Sum_probs=167.5
Q ss_pred HHHHHHHHHhhcC----hhhHHHHHhCCChHHHHHhhcCCCCCccccCCCccchHHHhHHHHHHHHhc--CChhhHHHHH
Q 005044 81 KRATHVLAELAKN----EEVVNWIVEGGAVPALVKHLQAPPTSEADRNLKPFEHEVEKGSAFALGLLA--VKPEHQQLIV 154 (717)
Q Consensus 81 ~~a~~~L~~l~~~----~~~~~~~~~~g~i~~L~~lL~~~~~~~~~~~~~~~~~~v~~~a~~~L~~l~--~~~~~~~~~~ 154 (717)
+.|+..+..++.. +..-..++ +.+|.++..+.+... .||..|-.++..+. -+++..
T Consensus 70 ~~a~~~~~~~~~~~~~~~~~e~~~~--~~~~~~~~~~~dk~~------------~v~~aa~~~~~~~~~~~~~~a~---- 131 (986)
T 2iw3_A 70 ANAMQAVAHIANQSNLSPSVEPYIV--QLVPAICTNAGNKDK------------EIQSVASETLISIVNAVNPVAI---- 131 (986)
T ss_dssp HHHHHHHHHHTCTTTCCTTTHHHHH--TTHHHHHHHTTCSSH------------HHHHHHHHHHHHHHHHSCGGGH----
T ss_pred HHHHHHHHHHHHhcCCCCCcccchH--HHHHHHHHHhcCCch------------HHHHHHHHHHHHHHHhCCHHHH----
Confidence 7777888888752 22222232 578888888876655 89999888888888 555443
Q ss_pred hCCChHHHHHHHhccccCCCccchhHHHHHHHHHHHHHhhcCchhhhHHHhcCCcHHHHHhhcCCCHHHHHHHHHHHHHh
Q 005044 155 DNGALSHLVNLLKRHMDSNCSRAVNSVIRRAADAITNLAHENSSIKTRVRMEGGIPPLVELLEFTDTKVQRAAAGALRTL 234 (717)
Q Consensus 155 ~~~~i~~L~~lL~~~~~~~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~L 234 (717)
...+|.|+..|+.... |..+..|+.++..++...+ ..-...-...+|.+...+.+..+++...|..++..+
T Consensus 132 -~~~~~~~~~~~~~~~k-------w~~k~~~l~~~~~~~~~~~-~~~~~~~~~~~p~~~~~~~d~k~~v~~~~~~~~~~~ 202 (986)
T 2iw3_A 132 -KALLPHLTNAIVETNK-------WQEKIAILAAFSAMVDAAK-DQVALRMPELIPVLSETMWDTKKEVKAAATAAMTKA 202 (986)
T ss_dssp -HHHHHHHHHHHHHCCC-------HHHHHHHHHHHHHHHHHSH-HHHHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHH
T ss_pred -HHHHHHHHHHhccccc-------hHHHHHHHHHHHHHHHHhH-HHHHHhccchhcchHhhcccCcHHHHHHHHHHHHHH
Confidence 2347889998866543 6889999999999997553 222333356788999999899999999999999999
Q ss_pred hccChhhHHHHHhcCCHHHHHHHHcCCCHHHHHHHHHHHHHhhcCChHHHHHHHHcCChHHHHHhhccCChHHHHHHHHH
Q 005044 235 AFKNDENKNQIVECNALPTLILMLRSEDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLSSCCSESQREAALL 314 (717)
Q Consensus 235 ~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~l~~L~~ll~~~~~~~~~~a~~~ 314 (717)
|. .-.|... ...+|.|++.+.+++. ...++..|+.-+.-.+.....+ +=.+|.|..-|......+++.++.+
T Consensus 203 ~~-~~~n~d~---~~~~~~~~~~~~~p~~--~~~~~~~l~~~tfv~~v~~~~l--~~~~p~l~r~l~~~~~~~~r~~~~~ 274 (986)
T 2iw3_A 203 TE-TVDNKDI---ERFIPSLIQCIADPTE--VPETVHLLGATTFVAEVTPATL--SIMVPLLSRGLNERETGIKRKSAVI 274 (986)
T ss_dssp GG-GCCCTTT---GGGHHHHHHHHHCTTH--HHHHHHHHTTCCCCSCCCHHHH--HHHHHHHHHHHTSSSHHHHHHHHHH
T ss_pred Hh-cCCCcch---hhhHHHHHHHhcChhh--hHHHHHHhhcCeeEeeecchhH--HHHHHHHHhhhccCcchhheeeEEE
Confidence 86 1222111 2468999999988754 4444555544332211110000 1136777777888888999999999
Q ss_pred HHHHhcC--ChhhHHHHHhcCChHHHHHHhcC-CCHHHHHHHHHHHHHhhc
Q 005044 315 LGQFAAT--DSDCKVHIVQRGAVRPLIEMLQS-PDVQLREMSAFALGRLAQ 362 (717)
Q Consensus 315 L~~l~~~--~~~~~~~l~~~~~l~~L~~~l~~-~~~~v~~~a~~~L~~l~~ 362 (717)
+.|+|.- ++.... ..-..++|.+-..... .+|++|+.+..++..|-+
T Consensus 275 ~~n~~~lv~~~~~~~-~f~~~l~p~~~~~~~~~~~pe~r~~~~~a~~~l~~ 324 (986)
T 2iw3_A 275 IDNMCKLVEDPQVIA-PFLGKLLPGLKSNFATIADPEAREVTLRALKTLRR 324 (986)
T ss_dssp HHHHHTTCCCHHHHH-HHHTTTHHHHHHHTTTCCSHHHHHHHHHHHHHHHH
T ss_pred EcchhhhcCCHHHHh-hhhhhhhhHHHHHhhccCCHHHHHHHHHHHHHHHH
Confidence 9999853 333333 3335677777777655 799999998888888753
No 118
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=97.61 E-value=0.0071 Score=68.24 Aligned_cols=286 Identities=13% Similarity=0.118 Sum_probs=186.2
Q ss_pred HHHHHHHHHHhhcCchhhhHHHhcCCcHHHHHhhcCCCHHHHHHHHHHHHHhhccCh---hhHHHHHhcCCHHHHHHHHc
Q 005044 183 RRAADAITNLAHENSSIKTRVRMEGGIPPLVELLEFTDTKVQRAAAGALRTLAFKND---ENKNQIVECNALPTLILMLR 259 (717)
Q Consensus 183 ~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~L~~~~~---~~~~~~~~~g~i~~L~~ll~ 259 (717)
..++..+.++........ ....+.+..|.+.+.+.... +.|+.++..|+.... ..-..++ +.++.++..+.
T Consensus 32 ~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~k~~~--~~a~~~~~~~~~~~~~~~~~e~~~~--~~~~~~~~~~~ 105 (986)
T 2iw3_A 32 HEIASEVASFLNGNIIEH--DVPEHFFGELAKGIKDKKTA--ANAMQAVAHIANQSNLSPSVEPYIV--QLVPAICTNAG 105 (986)
T ss_dssp HHHHHHHHHHHTSSCSSS--SCCHHHHHHHHHHHTSHHHH--HHHHHHHHHHTCTTTCCTTTHHHHH--TTHHHHHHHTT
T ss_pred HHHHHHHHHHHhcccccc--ccchhHHHHHHHHHhccCCH--HHHHHHHHHHHHhcCCCCCcccchH--HHHHHHHHHhc
Confidence 445666666655332211 11124566777777664433 899999999985332 1222222 57899999998
Q ss_pred CCCHHHHHHHHHHHHHhhcC-ChHHHHHHHHcCChHHHHHhhccC-ChHHHHHHHHHHHHHhcCChhhHHHHHhcCChHH
Q 005044 260 SEDSAIHYEAVGVIGNLVHS-SPNIKKEVLAAGALQPVIGLLSSC-CSESQREAALLLGQFAATDSDCKVHIVQRGAVRP 337 (717)
Q Consensus 260 ~~~~~v~~~a~~~L~~l~~~-~~~~~~~~~~~g~l~~L~~ll~~~-~~~~~~~a~~~L~~l~~~~~~~~~~l~~~~~l~~ 337 (717)
+....|+..|..++..+... ++... ..++|.|+..+.+. .|..+..|+.++..++...+.. ....-..++|.
T Consensus 106 dk~~~v~~aa~~~~~~~~~~~~~~a~-----~~~~~~~~~~~~~~~kw~~k~~~l~~~~~~~~~~~~~-~~~~~~~~~p~ 179 (986)
T 2iw3_A 106 NKDKEIQSVASETLISIVNAVNPVAI-----KALLPHLTNAIVETNKWQEKIAILAAFSAMVDAAKDQ-VALRMPELIPV 179 (986)
T ss_dssp CSSHHHHHHHHHHHHHHHHHSCGGGH-----HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHSHHH-HHHHHHHHHHH
T ss_pred CCchHHHHHHHHHHHHHHHhCCHHHH-----HHHHHHHHHHhccccchHHHHHHHHHHHHHHHHhHHH-HHHhccchhcc
Confidence 88899999888888777543 23221 34588899988765 5999999999999998544332 22223568899
Q ss_pred HHHHhcCCCHHHHHHHHHHHHHhhcCCCCchhhHhcCChHHHHHhhcCCChhHHHHHHHHHHhccCCCcchHHHHHhcCc
Q 005044 338 LIEMLQSPDVQLREMSAFALGRLAQDMHNQAGIAHNGGLVPLLKLLDSKNGSLQHNAAFALYGLADNEDNVADFIRVGGV 417 (717)
Q Consensus 338 L~~~l~~~~~~v~~~a~~~L~~l~~~~~~~~~l~~~~~l~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~l~~~~~i 417 (717)
+...+.+..+++..+|..++..+|.--.|... ...++.|++.+.+++. + ..+...|..-+-..+--..
T Consensus 180 ~~~~~~d~k~~v~~~~~~~~~~~~~~~~n~d~---~~~~~~~~~~~~~p~~-~-~~~~~~l~~~tfv~~v~~~------- 247 (986)
T 2iw3_A 180 LSETMWDTKKEVKAAATAAMTKATETVDNKDI---ERFIPSLIQCIADPTE-V-PETVHLLGATTFVAEVTPA------- 247 (986)
T ss_dssp HHHHTTCSSHHHHHHHHHHHHHHGGGCCCTTT---GGGHHHHHHHHHCTTH-H-HHHHHHHTTCCCCSCCCHH-------
T ss_pred hHhhcccCcHHHHHHHHHHHHHHHhcCCCcch---hhhHHHHHHHhcChhh-h-HHHHHHhhcCeeEeeecch-------
Confidence 99999999999999999999999974444321 2467889998887643 2 2333333322211111000
Q ss_pred cccccchhHHhhhHHHHHHHHHHHHHHhhhchHHHHHHHHhhcchhHHHHHHHHHHhccCCCCCcee--eecCCCHHHHH
Q 005044 418 QKLQDGEFIVQATKDCVAKTLKRLEEKIHGRVLNHLLYLMRVAEKGVQRRVALALAHLCSPDDQRTI--FIDGGGLELLL 495 (717)
Q Consensus 418 ~~L~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~--~~~~~~l~~L~ 495 (717)
.. +-++|-|..-|......+++.++.++.|++.--+.... ..-...+|.|.
T Consensus 248 ---------~l------------------~~~~p~l~r~l~~~~~~~~r~~~~~~~n~~~lv~~~~~~~~f~~~l~p~~~ 300 (986)
T 2iw3_A 248 ---------TL------------------SIMVPLLSRGLNERETGIKRKSAVIIDNMCKLVEDPQVIAPFLGKLLPGLK 300 (986)
T ss_dssp ---------HH------------------HHHHHHHHHHHTSSSHHHHHHHHHHHHHHHTTCCCHHHHHHHHTTTHHHHH
T ss_pred ---------hH------------------HHHHHHHHhhhccCcchhheeeEEEEcchhhhcCCHHHHhhhhhhhhhHHH
Confidence 00 01455566666777889999999999999765442211 11234567777
Q ss_pred HHhcC-CCchhhhhhHHHHHHhhhc
Q 005044 496 GLLGS-TNPKQQLDGAVALFKLANK 519 (717)
Q Consensus 496 ~ll~~-~~~~v~~~a~~~l~~L~~~ 519 (717)
+..+. .+|++|..|..++..|.+-
T Consensus 301 ~~~~~~~~pe~r~~~~~a~~~l~~~ 325 (986)
T 2iw3_A 301 SNFATIADPEAREVTLRALKTLRRV 325 (986)
T ss_dssp HHTTTCCSHHHHHHHHHHHHHHHHH
T ss_pred HHhhccCCHHHHHHHHHHHHHHHHh
Confidence 76654 9999999999999888654
No 119
>2x1g_F Cadmus; transport protein, developmental protein, mRNA processing, nuclear transport, mRNA splicing, mRNA transport; 3.35A {Drosophila melanogaster}
Probab=97.35 E-value=0.015 Score=67.89 Aligned_cols=381 Identities=9% Similarity=0.045 Sum_probs=191.2
Q ss_pred HHHHHHHHHHHHHhhcC--hhhHHHHHhCCChHHHHHhhcCCCCCccccCCCccchHHHhHHHHHHHHhcCC-----hh-
Q 005044 77 RAAAKRATHVLAELAKN--EEVVNWIVEGGAVPALVKHLQAPPTSEADRNLKPFEHEVEKGSAFALGLLAVK-----PE- 148 (717)
Q Consensus 77 ~~~~~~a~~~L~~l~~~--~~~~~~~~~~g~i~~L~~lL~~~~~~~~~~~~~~~~~~v~~~a~~~L~~l~~~-----~~- 148 (717)
..++.....+|..++.. + .. .+.++.|+.+++.++.+ ...++..+..++.+|..+++. +.
T Consensus 99 ~~vr~kl~~~la~i~~~~~p-~W-----p~~l~~l~~~~~~~~~~------~~~~~~~~~~~l~iL~~l~EEi~~~~~~~ 166 (971)
T 2x1g_F 99 KIVLNRLCISLGAYIVHMLG-EW-----PGAIEEVINTFQNQRMP------NVSADVQLWIMLEVLTAIPEEAQVIHTSV 166 (971)
T ss_dssp HHHHHHHHHHHHHHHHHTTC-C-----------HHHHHHHHTC----------CHHHHHHHHHHHHHHHHHHHHHCCCSS
T ss_pred HHHHHHHHHHHHHHHHHccc-cc-----cHHHHHHHHHHhccccc------cCCCHHHHHHHHHHHHHhHHHHhccCcHH
Confidence 34566666666666652 2 11 23567777777653110 001236777888888877721 10
Q ss_pred ----hHHHHHhCCChHHHHHHH----hccccCCCccchhHHHHHHHHHHHHHhh--cCchhhhHHHhcCCcHHHHHhhc-
Q 005044 149 ----HQQLIVDNGALSHLVNLL----KRHMDSNCSRAVNSVIRRAADAITNLAH--ENSSIKTRVRMEGGIPPLVELLE- 217 (717)
Q Consensus 149 ----~~~~~~~~~~i~~L~~lL----~~~~~~~~~~~~~~~~~~a~~~L~~l~~--~~~~~~~~~~~~~~i~~L~~ll~- 217 (717)
.++.+. ..++.++.++ ............++++..++.++..... .-+.. .....++.+.. +.
T Consensus 167 ~r~~~~~~l~--~~~~~vl~ll~~~l~~~~~~~~~~~~~~~~~~al~~l~~~~~~~~ip~~----~~~~ll~~l~~-L~~ 239 (971)
T 2x1g_F 167 KRVVLRAEIA--KRVQLVIHTVERYLKLQMNRVWDAEAYSNMNRAVKCVGTWIKNIGYTIE----GCVTITAVLLE-VVH 239 (971)
T ss_dssp CHHHHHHHHH--TTHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHHHHSCCCGG----GHHHHHHHHHH-HHH
T ss_pred HHHHHHHHHH--HHHHHHHHHHHHHHhcccCCCCCccchhHHHHHHHHHHHHHhhCCcCcc----ccccHHHHHHh-hhh
Confidence 112222 2244444444 3332211111122577788888876554 22221 22334555555 31
Q ss_pred ---------------CCCHHHHHHHHHHHHHhhccCh--hhHHHHHhcCCHHHHHH-------HHcCCC---HHHHHHHH
Q 005044 218 ---------------FTDTKVQRAAAGALRTLAFKND--ENKNQIVECNALPTLIL-------MLRSED---SAIHYEAV 270 (717)
Q Consensus 218 ---------------~~~~~v~~~a~~~L~~L~~~~~--~~~~~~~~~g~i~~L~~-------ll~~~~---~~v~~~a~ 270 (717)
+++++++..|+.++..+....+ +....+. .+++.++. .+.+++ ++.....+
T Consensus 240 ~~~~~~~~~~~~~~~~~~~~~~~~a~~~l~~i~~~~~~~~~~~~~~--~l~~~~~~~~~~~~~~~~~~d~~~~~~~~~l~ 317 (971)
T 2x1g_F 240 KCYWPCIHAGDGCMTADENELAESCLKTMVNIIIQPDCHNYPKTAF--VLIKMFLDSLSEITKTEWKRENDNEDIIVHIY 317 (971)
T ss_dssp HHHSSSCC---CCCCHHHHHHHHHHHHHHHHHHHCSGGGGCHHHHH--HHHHHHHHHHHHHHHHHSSSSCSCSHHHHHHH
T ss_pred hhccccccccccccCcCCcHHHHHHHHHHHHHHcCccccccHHHHH--HHHHHHHHhHHHHHHHHhcccccchHHHHHHH
Confidence 1457899999999999986322 1111111 12333332 223444 37777778
Q ss_pred HHHHHhhcCChHHHH-H---------HHHcCChHHHHHhhcc-----CChHHHHHHHHHHHHHhcCC---------hhhH
Q 005044 271 GVIGNLVHSSPNIKK-E---------VLAAGALQPVIGLLSS-----CCSESQREAALLLGQFAATD---------SDCK 326 (717)
Q Consensus 271 ~~L~~l~~~~~~~~~-~---------~~~~g~l~~L~~ll~~-----~~~~~~~~a~~~L~~l~~~~---------~~~~ 326 (717)
+.+..+......... . -.-...++.++.+... .+.++...++..+..++... ....
T Consensus 318 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~ll~~~~~~~~~~~~~~v~~~~l~fw~~l~~~~~~~~~~~~~~~~~ 397 (971)
T 2x1g_F 318 MLFVSSVERHSTLLLSGITSADPELSILVHRIVQEILHCTDKPGIYPVEESCSTMALAFWYMLQDEVFAMSNDEQKHKCW 397 (971)
T ss_dssp HHHHHHHHHTHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHCSSCTTTTCTTHHHHHHHHHHHHHHHHC-------CHHH
T ss_pred HHHHHHHHHHHHHHHHHhccCcccccHHHHHHHHHHHHHHcCCCCCCcchhhhHHHHHHHHHHHHHHHhcccccchHHHH
Confidence 877777643322111 0 0001345555555533 36778888888887775310 1111
Q ss_pred ---HHHHhcCChHHHHHHhcCC--------C-------HHHHHHHHHHHHHhhcCCCCchhhHhcCChHHHHHhhcC---
Q 005044 327 ---VHIVQRGAVRPLIEMLQSP--------D-------VQLREMSAFALGRLAQDMHNQAGIAHNGGLVPLLKLLDS--- 385 (717)
Q Consensus 327 ---~~l~~~~~l~~L~~~l~~~--------~-------~~v~~~a~~~L~~l~~~~~~~~~l~~~~~l~~L~~ll~~--- 385 (717)
..+. ..+++.++..+.-+ + ...|..+..+|..++...+ ..+. ...++.+.+.+.+
T Consensus 398 ~~~~~~~-~~ll~~l~~~~~~p~~~~~~~~d~~e~~~f~~~R~~~~~~l~~~~~~~~--~~~l-~~~~~~l~~~l~~~~~ 473 (971)
T 2x1g_F 398 EYIKPLY-AHLTRILVRKSEQPDEKSLAKWSSDDLECFRCYRQDISDTFMYCYDVLN--DYIL-EILAAMLDEAIADLQR 473 (971)
T ss_dssp HHHHHHH-HHHHHHHHHHTSCCCTTTTSCSCHHHHHHHHHHHHHHHHHHHHHHTTCT--THHH-HHHHHHHHHHHHHHHH
T ss_pred HHHHHHH-HHHHHHHHHHhcCCCcccccccCHhHHHHHHHHHHHHHHHHHHHHHHHh--HHHH-HHHHHHHHHHHHhccC
Confidence 1111 23455555555321 1 1356677777877775322 1111 1112223333332
Q ss_pred --CChhHHHHHHHHHHhccCCCcchHHHHHhcCccccccchhHHhhhHHHHHHHHHHHHHHhhhchHHHHHHHH-hhcch
Q 005044 386 --KNGSLQHNAAFALYGLADNEDNVADFIRVGGVQKLQDGEFIVQATKDCVAKTLKRLEEKIHGRVLNHLLYLM-RVAEK 462 (717)
Q Consensus 386 --~~~~v~~~a~~~L~~l~~~~~~~~~l~~~~~i~~L~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~L~~ll-~~~~~ 462 (717)
.++..++.++.++..++....... ...++ .+++.+..+. .++++
T Consensus 474 ~~~~w~~~eaal~~l~~iae~~~~~~----~~~l~-----------------------------~l~~~l~~l~~~d~~~ 520 (971)
T 2x1g_F 474 HPTHWTKLEACIYSFQSVAEHFGGEE----KRQIP-----------------------------RLMRVLAEIPYEKLNV 520 (971)
T ss_dssp CTTCCHHHHHHHHHHHHTTTC----------CHHH-----------------------------HHHHHHHHSCTTTSCH
T ss_pred CCCcHHHHHHHHHHHHHHHhhcChhh----hHHHH-----------------------------HHHHHHHhcCccccCH
Confidence 688899999999999986533210 00000 0222111111 13478
Q ss_pred hHHHHHHHHHHhccCCCCCceeeecCCCHHHHHHHhcCCCchhhhhhHHHHHHhhhc
Q 005044 463 GVQRRVALALAHLCSPDDQRTIFIDGGGLELLLGLLGSTNPKQQLDGAVALFKLANK 519 (717)
Q Consensus 463 ~v~~~a~~aL~~l~~~~~~~~~~~~~~~l~~L~~ll~~~~~~v~~~a~~~l~~L~~~ 519 (717)
.+|..++++|+.++..-...... -...++.|+..+ + +.++..|+.++.+++..
T Consensus 521 ~vr~~a~~~l~~~~~~l~~~~~~-l~~vl~~l~~~l-~--~~v~~~A~~al~~l~~~ 573 (971)
T 2x1g_F 521 KLLGTALETMGSYCNWLMENPAY-IPPAINLLVRGL-N--SSMSAQATLGLKELCRD 573 (971)
T ss_dssp HHHHHHHHHHHHTHHHHC----C-HHHHHHHHHHHH-H--SSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhcCHHH-HHHHHHHHHHHh-C--hHHHHHHHHHHHHHHHH
Confidence 89999999999887542211111 123566666666 2 78999999999999865
No 120
>3ibv_A Exportin-T; karyopherin, heat repeat, cytoplasm, nucleus, RNA- binding, transport, tRNA processing, tRNA-binding, RNA binding protein; 3.10A {Schizosaccharomyces pombe} PDB: 3icq_T*
Probab=97.21 E-value=0.033 Score=64.26 Aligned_cols=258 Identities=14% Similarity=0.084 Sum_probs=139.1
Q ss_pred HHHHHHHHHHHHHHhhc--Chh----hHHHHHhCCChHHHHHhhcCCCCCccccCCCccchHHHhHHHHHHHHhc--CCh
Q 005044 76 DRAAAKRATHVLAELAK--NEE----VVNWIVEGGAVPALVKHLQAPPTSEADRNLKPFEHEVEKGSAFALGLLA--VKP 147 (717)
Q Consensus 76 ~~~~~~~a~~~L~~l~~--~~~----~~~~~~~~g~i~~L~~lL~~~~~~~~~~~~~~~~~~v~~~a~~~L~~l~--~~~ 147 (717)
+..++..|+.+|.+..+ +++ .+..+ + ..|+.++..... ....+-++.+.+.++..++ .-|
T Consensus 56 ~~~vr~fa~~~L~~~I~~l~~e~~~~~~~~l-r----~~ll~~l~~~~~-------~~~~~~IrnKL~~~la~l~~~~~p 123 (980)
T 3ibv_A 56 KPSTRLICLQTLSEKVREWNNESNLLELQMI-R----DSVWSYIKELSF-------LDEPAYISNAVQHLLTLLFLQLYP 123 (980)
T ss_dssp CHHHHHHHHHHHHHHHHHCCTTTSHHHHHHH-H----HHHHHHHHHCCS-------TTSCTHHHHHHHHHHHHHHHHHTT
T ss_pred CHHHHHHHHHHHHHHHHhCChhhhHHHHHHH-H----HHHHHHHHHhcC-------CCCcHHHHHHHHHHHHHHHHHhCc
Confidence 45578899998888665 334 33333 2 333444432110 0012279999999999988 222
Q ss_pred hhHHHHHhCCChHHHHHHHhccccCCCccchhHHHHHHHHHHHHHhhcCc---------------hhhhHHHhcC---Cc
Q 005044 148 EHQQLIVDNGALSHLVNLLKRHMDSNCSRAVNSVIRRAADAITNLAHENS---------------SIKTRVRMEG---GI 209 (717)
Q Consensus 148 ~~~~~~~~~~~i~~L~~lL~~~~~~~~~~~~~~~~~~a~~~L~~l~~~~~---------------~~~~~~~~~~---~i 209 (717)
+. -.+.++.++.++..++.. ......+++|..+..+-. ..+..+.... ++
T Consensus 124 ~~-----Wp~~i~~l~~~~~~~~~~-------~~~~~~LriL~~i~EEv~~~~~~~~~~~~~r~~~lkd~m~~~~~~~i~ 191 (980)
T 3ibv_A 124 SN-----WNDFFASLQGVIAASSQS-------EFSNFYLKVLLSIGDEIADSLVLKTDVQIQKDNLVKDAIRANDMSDIV 191 (980)
T ss_dssp TT-----CTTHHHHHHHHHHHHCCH-------HHHHHHHHHHHHHHHHHCCCCSCCCHHHHHHHHHHHHHHHHHTHHHHH
T ss_pred cc-----CchHHHHHHHHhcCCChh-------HHHHHHHHHHHHhHHHHHhcccccCHHHHhhhHHHHHHHHhccHHHHH
Confidence 21 124567777777654220 233344555554443210 0011222110 12
Q ss_pred HHHHHhh----cCCCHHHHHHHHHHHHHhhccChhhHHHHHhcCCHHHHHHHHcCCCHHHHHHHHHHHHHhhcCCh--HH
Q 005044 210 PPLVELL----EFTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSEDSAIHYEAVGVIGNLVHSSP--NI 283 (717)
Q Consensus 210 ~~L~~ll----~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~--~~ 283 (717)
+....++ .+.++.++..++.+|..... --....+.+.+.++.+.++|.+ ++++..|+.+|..+..... ..
T Consensus 192 ~~~~~iL~~~~~~~~~~l~~~~L~~l~s~i~--wi~~~~i~~~~ll~~l~~~L~~--~~~r~~A~ecL~ei~~k~~~~~~ 267 (980)
T 3ibv_A 192 SFVYEMMLAYSNAKNYGTVGLCLQVYAQWVS--WININLIVNEPCMNLLYSFLQI--EELRCAACETMTEIVNKKMKPLE 267 (980)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHTT--TSCHHHHHCHHHHHHHHHHTTS--HHHHHHHHHHHHHHHHSCCCHHH
T ss_pred HHHHHHHHHHhccCCHHHHHHHHHHHHHHHh--hcCHHhhhcchHHHHHHHHcCC--hHHHHHHHHHHHHHHHcCCChhh
Confidence 3333333 33678899999999998885 2334556667788888888865 7899999999999976532 22
Q ss_pred HHHHHHcCChHHHHHhhc--cCChHHHHHHHHHHHHHh------cCCh-----hhHHH--HHhcCChHHHHHHhcCCCHH
Q 005044 284 KKEVLAAGALQPVIGLLS--SCCSESQREAALLLGQFA------ATDS-----DCKVH--IVQRGAVRPLIEMLQSPDVQ 348 (717)
Q Consensus 284 ~~~~~~~g~l~~L~~ll~--~~~~~~~~~a~~~L~~l~------~~~~-----~~~~~--l~~~~~l~~L~~~l~~~~~~ 348 (717)
+..++..=.+...+..+. ..+.+..+..+..+..++ ...+ +.... -.-.++++.++..+.+++.+
T Consensus 268 k~~li~~l~L~~~~~~l~~~~~D~d~~~~la~L~~~~ge~l~~~~~~~~~~~~~~~~~~~~~l~~ll~~lL~~~~~~~de 347 (980)
T 3ibv_A 268 KLNLLNILNLNLFFSKSQEQSTDPNFDEHVAKLINAQGVELVAIKSDPSELSPELKENCSFQLYNLFPYLIRYLSDDYDE 347 (980)
T ss_dssp HHHHHHHHHHHHHHCC-----CCHHHHHHHHHHHHHHHHHHHHHHTSCC--CHHHHHHHHHHHHHTHHHHHHHHTCSSHH
T ss_pred HHHHHHHHhHHHHHHHHhcccccHHHHHHHHHHHHHHHHHHHHHccCccccchhhhhhHHHHHHHHHHHHHHHhCCCchh
Confidence 222222201111121222 355565554444443332 1111 11111 11135889999999888888
Q ss_pred HHHHHHHHHHHhh
Q 005044 349 LREMSAFALGRLA 361 (717)
Q Consensus 349 v~~~a~~~L~~l~ 361 (717)
+...++..+..+.
T Consensus 348 Vs~~t~~Fw~~~l 360 (980)
T 3ibv_A 348 TSTAVFPFLSDLL 360 (980)
T ss_dssp HHHTTHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 8877776666655
No 121
>1lrv_A LRV, leucine-rich repeat variant; leucine-rich repeats, repetitive structure, iron sulfur proteins, nitrogen fixation; 2.60A {Azotobacter vinelandii} SCOP: a.118.1.5
Probab=97.20 E-value=0.00013 Score=68.74 Aligned_cols=164 Identities=20% Similarity=0.155 Sum_probs=111.9
Q ss_pred HHHHHhhcCCCHHHHHHHHHHHHHhhccChhhHHHHHhcCCHHHHHHHHcCCCHHHHHHHHHHHHHhhcCChHHHHHHHH
Q 005044 210 PPLVELLEFTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSEDSAIHYEAVGVIGNLVHSSPNIKKEVLA 289 (717)
Q Consensus 210 ~~L~~ll~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~ 289 (717)
..+..+++++++.||..++..| . .+.|..++++++..||..++..+ .
T Consensus 77 ~~l~~L~~D~~~~VR~~aA~~L---~---------------~~~L~~ll~D~d~~VR~~aA~~l---~------------ 123 (244)
T 1lrv_A 77 EALTPLIRDSDEVVRRAVAYRL---P---------------REQLSALMFDEDREVRITVADRL---P------------ 123 (244)
T ss_dssp GGGGGGTTCSSHHHHHHHHTTS---C---------------SGGGGGTTTCSCHHHHHHHHHHS---C------------
T ss_pred HHHHHHccCcCHHHHHHHHHHC---C---------------HHHHHHHHcCCCHHHHHHHHHhC---C------------
Confidence 3466777888888888887542 1 13466778888888888877742 1
Q ss_pred cCChHHHHHhhccCChHHHHHHHHHHHHHhcCChhhHHHHHhcCChHHHHHHhcCCCHHHHHHHHHHHHHhhcCCCCchh
Q 005044 290 AGALQPVIGLLSSCCSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQSPDVQLREMSAFALGRLAQDMHNQAG 369 (717)
Q Consensus 290 ~g~l~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~l~~~~~l~~L~~~l~~~~~~v~~~a~~~L~~l~~~~~~~~~ 369 (717)
.+.+..++.++++.+|..++.. +. .+.+..+++++++.||..++.. +
T Consensus 124 ---~~~L~~L~~D~d~~VR~~aA~~---l~---------------~~~l~~l~~D~d~~VR~~aa~~---l--------- 170 (244)
T 1lrv_A 124 ---LEQLEQMAADRDYLVRAYVVQR---IP---------------PGRLFRFMRDEDRQVRKLVAKR---L--------- 170 (244)
T ss_dssp ---TGGGGGGTTCSSHHHHHHHHHH---SC---------------GGGGGGTTTCSCHHHHHHHHHH---S---------
T ss_pred ---HHHHHHHHcCCCHHHHHHHHHh---cC---------------HHHHHHHHcCCCHHHHHHHHHc---C---------
Confidence 1235566778888888887762 21 1234456678888898887764 1
Q ss_pred hHhcCChHHHHHhhcCCChhHHHHHHHHHHhccCCCcchHHHHHhcCccccccchhHHhhhHHHHHHHHHHHHHHhhhch
Q 005044 370 IAHNGGLVPLLKLLDSKNGSLQHNAAFALYGLADNEDNVADFIRVGGVQKLQDGEFIVQATKDCVAKTLKRLEEKIHGRV 449 (717)
Q Consensus 370 l~~~~~l~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~l~~~~~i~~L~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 449 (717)
..+.+..++.+.++.|+..++..+ .
T Consensus 171 -----~~~ll~~ll~D~d~~VR~aaa~~l---~----------------------------------------------- 195 (244)
T 1lrv_A 171 -----PEESLGLMTQDPEPEVRRIVASRL---R----------------------------------------------- 195 (244)
T ss_dssp -----CGGGGGGSTTCSSHHHHHHHHHHC---C-----------------------------------------------
T ss_pred -----CHHHHHHHHcCCCHHHHHHHHHhC---C-----------------------------------------------
Confidence 112344677888888988887652 1
Q ss_pred HHHHHHHHhhcchhHHHHHHHHHHhccCCCCCceeeecCCCHHHHHHHhcCCCchhhhhhHHH
Q 005044 450 LNHLLYLMRVAEKGVQRRVALALAHLCSPDDQRTIFIDGGGLELLLGLLGSTNPKQQLDGAVA 512 (717)
Q Consensus 450 ~~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~~~~~~l~~L~~ll~~~~~~v~~~a~~~ 512 (717)
.+.|..++.++++.||..++..++ .+.|..| .++++.|+..|+..
T Consensus 196 ~~~L~~Ll~D~d~~VR~~aa~~l~-----------------~~~L~~L-~D~~~~VR~aa~~~ 240 (244)
T 1lrv_A 196 GDDLLELLHDPDWTVRLAAVEHAS-----------------LEALREL-DEPDPEVRLAIAGR 240 (244)
T ss_dssp GGGGGGGGGCSSHHHHHHHHHHSC-----------------HHHHHHC-CCCCHHHHHHHHCC
T ss_pred HHHHHHHHcCCCHHHHHHHHHcCC-----------------HHHHHHc-cCCCHHHHHHHHHH
Confidence 012556788899999999888753 4677777 88999999888753
No 122
>2x1g_F Cadmus; transport protein, developmental protein, mRNA processing, nuclear transport, mRNA splicing, mRNA transport; 3.35A {Drosophila melanogaster}
Probab=97.13 E-value=0.046 Score=63.71 Aligned_cols=218 Identities=11% Similarity=0.061 Sum_probs=120.5
Q ss_pred hHHHhHHHHHHHHhcCChhhHHHHHhCCChHHHHHHHhcccc-CCCccchhHHHHHHHHHHHHHhhcCchhhhHHHhcCC
Q 005044 130 HEVEKGSAFALGLLAVKPEHQQLIVDNGALSHLVNLLKRHMD-SNCSRAVNSVIRRAADAITNLAHENSSIKTRVRMEGG 208 (717)
Q Consensus 130 ~~v~~~a~~~L~~l~~~~~~~~~~~~~~~i~~L~~lL~~~~~-~~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~ 208 (717)
+..++.++.+++.++....... ...++.++.++..-.. +.. ..++..++++++.++..-......+ ...
T Consensus 478 w~~~eaal~~l~~iae~~~~~~----~~~l~~l~~~l~~l~~~d~~----~~vr~~a~~~l~~~~~~l~~~~~~l--~~v 547 (971)
T 2x1g_F 478 WTKLEACIYSFQSVAEHFGGEE----KRQIPRLMRVLAEIPYEKLN----VKLLGTALETMGSYCNWLMENPAYI--PPA 547 (971)
T ss_dssp CHHHHHHHHHHHHTTTC----------CHHHHHHHHHHHSCTTTSC----HHHHHHHHHHHHHTHHHHC----CH--HHH
T ss_pred HHHHHHHHHHHHHHHhhcChhh----hHHHHHHHHHHHhcCccccC----HHHHHHHHHHHHHHHHHHhcCHHHH--HHH
Confidence 3889999999999994322111 1345555554422110 001 1789999999999886322211111 134
Q ss_pred cHHHHHhhcCCCHHHHHHHHHHHHHhhccChhhHHHHHhcCCHHHHHHHHcC--CCHHHHHHHHHHHHHhhcCCh-HHHH
Q 005044 209 IPPLVELLEFTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRS--EDSAIHYEAVGVIGNLVHSSP-NIKK 285 (717)
Q Consensus 209 i~~L~~ll~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~g~i~~L~~ll~~--~~~~v~~~a~~~L~~l~~~~~-~~~~ 285 (717)
++.++..+ + +.++..|+.++.+++........... .+++..+..++.. -+...+..+..+++.++...+ ....
T Consensus 548 l~~l~~~l-~--~~v~~~A~~al~~l~~~~~~~l~p~~-~~ll~~l~~~l~~~~~~~~~~~~~~~ai~~i~~~~~~~~~~ 623 (971)
T 2x1g_F 548 INLLVRGL-N--SSMSAQATLGLKELCRDCQLQLKPYA-DPLLNACHASLNTGRMKNSDSVRLMFSIGKLMSLLRPEEIP 623 (971)
T ss_dssp HHHHHHHH-H--SSCHHHHHHHHHHHHHHCHHHHHHHH-HHHHHHHHHHHHSTTSCHHHHHHHHHHHHHHHHTSCTTHHH
T ss_pred HHHHHHHh-C--hHHHHHHHHHHHHHHHHHHHhccccH-HHHHHHHHHHHcCCCCChHHHHHHHHHHHHHHHhCCHHHHH
Confidence 56666666 2 67899999999999964332222122 2456666777776 357888889999998875422 2111
Q ss_pred HHHHcCChHHHHH----hhccC--ChHHHHHHHHHHHHHhcC-----Ch--h--------hHHHHHhcCChHHHHHHhcC
Q 005044 286 EVLAAGALQPVIG----LLSSC--CSESQREAALLLGQFAAT-----DS--D--------CKVHIVQRGAVRPLIEMLQS 344 (717)
Q Consensus 286 ~~~~~g~l~~L~~----ll~~~--~~~~~~~a~~~L~~l~~~-----~~--~--------~~~~l~~~~~l~~L~~~l~~ 344 (717)
... ..+++.++. ++... +.+.+.....++..++.. .. . ....-....+++.+..++..
T Consensus 624 ~~~-~~ll~~l~~~l~~~~~~~~~~~~~~~~~~~~l~~L~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~l~~ 702 (971)
T 2x1g_F 624 KYL-DIIVSPCFEELQAICQADSKTPAARIRTIFRLNMISTLFSSLNTDVDEQATDQPIVQPVLLVMQRTMPIFKRIAEM 702 (971)
T ss_dssp HHH-HHHHHHHHHHHHHHHTC---CHHHHHHHHHHHHHHHHHHHHHTC-------------CCHHHHHTTHHHHHHHHHH
T ss_pred HHH-HHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHHHhhcCCCcCcccccccCCCchHHHHHHHHHHHHHHHHh
Confidence 111 223344443 33332 333333344444433211 00 0 00011224577888777753
Q ss_pred --CCHHHHHHHHHHHHHhhc
Q 005044 345 --PDVQLREMSAFALGRLAQ 362 (717)
Q Consensus 345 --~~~~v~~~a~~~L~~l~~ 362 (717)
.+..+.+.++++++.++.
T Consensus 703 ~~~~~~v~e~~~~~~~~~~~ 722 (971)
T 2x1g_F 703 WVEEIDVLEAACSAMKHAIT 722 (971)
T ss_dssp TTTCHHHHHHHHHHHHHHHH
T ss_pred ccccHHHHHHHHHHHHHHHH
Confidence 477999999999999875
No 123
>2fv2_A RCD1 required for cell differentiation1 homolog; armadillo-repeat, transcription; 2.20A {Homo sapiens}
Probab=97.12 E-value=0.043 Score=50.43 Aligned_cols=177 Identities=11% Similarity=0.121 Sum_probs=129.8
Q ss_pred HHHHHHHHHHhhcChhhHHHHHhCCChHHHHHhhcCCCCCccccCCCccchHHHhHHHHHHHHhc--CChhhHHHHHhCC
Q 005044 80 AKRATHVLAELAKNEEVVNWIVEGGAVPALVKHLQAPPTSEADRNLKPFEHEVEKGSAFALGLLA--VKPEHQQLIVDNG 157 (717)
Q Consensus 80 ~~~a~~~L~~l~~~~~~~~~~~~~g~i~~L~~lL~~~~~~~~~~~~~~~~~~v~~~a~~~L~~l~--~~~~~~~~~~~~~ 157 (717)
...|+..|..++.+|+.|..+++++..-.|..+|+..+..+. -+-+|..++.+++.+. ++++.-..+...+
T Consensus 73 VcnaLaLlQcvAshpetr~~Fl~a~iplyLyPfL~t~sk~r~-------fE~LRLtsLGVIgaLvK~dd~eVi~fLL~tE 145 (268)
T 2fv2_A 73 VCNALALLQCVASHPETRSAFLAAHIPLFLYPFLHTVSKTRP-------FEYLRLTSLGVIGALVKTDEQEVINFLLTTE 145 (268)
T ss_dssp HHHHHHHHHHHHHCTTTHHHHHHTTGGGGTHHHHHCCCCSHH-------HHHHHHHHHHHHHHHGGGCCHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHcCcchhhHHHHccchHHhhhhhccccCCCc-------chhhhhhHHHHHHHHhccCcHHHHHHHHhhh
Confidence 577788888899999999999999999999999998776321 2278999999999999 8889989999999
Q ss_pred ChHHHHHHHhccccCCCccchhHHHHHHHHHHHHHhhcCchhhhH------HHh-cCCcHHHH-HhhcCCCHHHHHHHHH
Q 005044 158 ALSHLVNLLKRHMDSNCSRAVNSVIRRAADAITNLAHENSSIKTR------VRM-EGGIPPLV-ELLEFTDTKVQRAAAG 229 (717)
Q Consensus 158 ~i~~L~~lL~~~~~~~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~------~~~-~~~i~~L~-~ll~~~~~~v~~~a~~ 229 (717)
.+|..++.++.... -.+..|..++..+..++...... +.. ...+..++ .+.+++++.+.+...+
T Consensus 146 iiplCLrime~Gse--------lSKtvAtfIlqKIL~dd~GL~YiC~t~eRF~av~~vL~~mV~~l~~~ps~RLLKhiir 217 (268)
T 2fv2_A 146 IIPLCLRIMESGSE--------LSKTVATFILQKILLDDTGLAYICQTYERFSHVAMILGKMVLQLSKEPSARLLKHVVR 217 (268)
T ss_dssp HHHHHHHHHHHSCH--------HHHHHHHHHHHHHHHSHHHHHHHTSSHHHHHHHHHHHHHHHHHTTTSCCHHHHHHHHH
T ss_pred HHHHHHHHHhhccH--------HHHHHHHHHHHHHhccchhHHHHHccHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHH
Confidence 99999999998765 66677888888777644333211 111 11222222 3456789999999999
Q ss_pred HHHHhhccChhhHHHHHhc-------CCHHHHHHHHcCCCHHHHHHHHHHHHHh
Q 005044 230 ALRTLAFKNDENKNQIVEC-------NALPTLILMLRSEDSAIHYEAVGVIGNL 276 (717)
Q Consensus 230 ~L~~L~~~~~~~~~~~~~~-------g~i~~L~~ll~~~~~~v~~~a~~~L~~l 276 (717)
+-..|+. ++..+..+... |.+. .++ .+|+.++.+-...+.|+
T Consensus 218 cYlRLsd-n~rar~aL~~~LP~~Lrd~tf~---~~l-~~D~~~k~~l~qLl~n~ 266 (268)
T 2fv2_A 218 CYLRLSD-NPRAREALRQCLPDQLKDTTFA---QVL-KDDTTTKRWLAQLVKNL 266 (268)
T ss_dssp HHHHHTT-SHHHHHHHHHHSCGGGTSSTTH---HHH-TSCHHHHHHHHHHHHHS
T ss_pred HHHHHhc-CHHHHHHHHHhCcHHhhChHHH---HHH-hcCHHHHHHHHHHHHhc
Confidence 9999996 77777666532 2222 223 24777777777777665
No 124
>4hat_C Exportin-1; heat repeat, nuclear export, RAN-ranbp1, LMB, leptomycin B, protein transport-antibiotic complex; HET: GNP LMB; 1.78A {Saccharomyces cerevisiae} PDB: 4hau_C* 4hav_C* 4hb2_C* 4hax_C* 4haw_C* 4hay_C* 4hb3_C* 4haz_C* 4hb4_C* 3m1i_C* 4hb0_C* 4gmx_C* 4gpt_C* 3vyc_A 2l1l_B
Probab=97.11 E-value=0.046 Score=63.16 Aligned_cols=316 Identities=9% Similarity=0.080 Sum_probs=161.5
Q ss_pred HHHHHHHhhhhhccccchHHHHHHHHHHHHHHHHhhcChhhHHHHHhCCChHHHH-HhhcCCCCCccccCCCccchHHHh
Q 005044 56 LSEVSAQVNVLNTTFSWLEADRAAAKRATHVLAELAKNEEVVNWIVEGGAVPALV-KHLQAPPTSEADRNLKPFEHEVEK 134 (717)
Q Consensus 56 ~~~i~~l~~~L~~~~~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~g~i~~L~-~lL~~~~~~~~~~~~~~~~~~v~~ 134 (717)
....+.+++++...+.... +..+...++.++.....--. ...++..+.++.++ .+|.. |.++.
T Consensus 189 ~~~~~~I~~ll~~iL~~~~-~~~l~~~~L~~l~s~l~WI~-i~~i~~~~ll~~l~~~~L~~--------------~~~r~ 252 (1023)
T 4hat_C 189 SKEFEQIFKLCFQVLEQGA-SSSLIVATLESLLRYLHWIP-YRYIYETNILELLSTKFMTS--------------PDTRA 252 (1023)
T ss_dssp HHHHHHHHHHHHHHHHHCS-SCHHHHHHHHHHHHHTTTSC-THHHHSSSHHHHHHTHHHHS--------------HHHHH
T ss_pred HHHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHHHHhCC-HHHhcchhHHHHHHHHHcCC--------------HHHHH
Confidence 4445566666655543321 22346677888887776211 13456778889998 88753 28999
Q ss_pred HHHHHHHHhcC-C---h--hhHHHHHh--CCChHHH-----------HHHHhccccCCCccchhHHHHHHHHHHHHHhhc
Q 005044 135 GSAFALGLLAV-K---P--EHQQLIVD--NGALSHL-----------VNLLKRHMDSNCSRAVNSVIRRAADAITNLAHE 195 (717)
Q Consensus 135 ~a~~~L~~l~~-~---~--~~~~~~~~--~~~i~~L-----------~~lL~~~~~~~~~~~~~~~~~~a~~~L~~l~~~ 195 (717)
.|+.+|..+.. . + +....+.. .+.+..+ ...+...+. .+.+....-+..+..+...
T Consensus 253 ~A~ecL~eIv~~~~~~~~~~~~~~l~~lf~~~l~~l~~~i~p~~~~l~~~~~~~~~-----~D~e~~~~l~~l~~~~~e~ 327 (1023)
T 4hat_C 253 ITLKCLTEVSNLKIPQDNDLIKRQTVLFFQNTLQQIATSVMPVTADLKATYANANG-----NDQSFLQDLAMFLTTYLAR 327 (1023)
T ss_dssp HHHHHHHHHHTSCCCSSCHHHHHHHHHHHHHHHHHHHHHTCCTTCCHHHHHHHTCT-----THHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHccccCCchHHHHHHHHHHHHHHHHHHHHHhCCCcchHHHHHhcccc-----chHHHHHHHHHHHHHHHHH
Confidence 99999999984 2 2 12211110 0111111 111111111 0115556666666555542
Q ss_pred Cch-------hhhHHHhcCCcHHHHHhhcCCCHHHHHHHHHHHHHhhcc---ChhhH---HHHHhcCCHHHHHHHHcCCC
Q 005044 196 NSS-------IKTRVRMEGGIPPLVELLEFTDTKVQRAAAGALRTLAFK---NDENK---NQIVECNALPTLILMLRSED 262 (717)
Q Consensus 196 ~~~-------~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~L~~~---~~~~~---~~~~~~g~i~~L~~ll~~~~ 262 (717)
+.. .+..+ ..++..|+.+...++.++...++..-..++.+ .+..+ ..+. ..+++.+++-+.-++
T Consensus 328 ~~~li~~~~~~~~~l--~~~l~~Ll~~~~~~d~ei~~~tl~FW~~L~~~l~~e~~~~~~~~~~~-~~L~~vli~km~~P~ 404 (1023)
T 4hat_C 328 NRALLESDESLRELL--LNAHQYLIQLSKIEERELFKTTLDYWHNLVADLFYEPLKKHIYEEIC-SQLRLVIIENMVRPE 404 (1023)
T ss_dssp HGGGGTSCGGGHHHH--HHHHHHHHHHTTSSCHHHHHHHHHHHHHHHHHHTTSTTTGGGGHHHH-HHHHHHHHHSCCCCT
T ss_pred HHHHHhCCcchhHHH--HHHHHHHHHhhCCCcHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHH-HHHHHHHHHhcCCCc
Confidence 221 11110 01122444444567888888888776667641 00000 0111 113444444333221
Q ss_pred --------------------HH-HH----HHHHHHHHHhhcCChHHHHHHHHcCChHHHHHhhcc--CChHHHHHHHHHH
Q 005044 263 --------------------SA-IH----YEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLSS--CCSESQREAALLL 315 (717)
Q Consensus 263 --------------------~~-v~----~~a~~~L~~l~~~~~~~~~~~~~~g~l~~L~~ll~~--~~~~~~~~a~~~L 315 (717)
++ .. +.++..+.++.. ++.... .++.+.+.+.+ .++..++.+++++
T Consensus 405 e~~ive~d~~~~~~e~~~d~d~~~~f~~~Rd~L~~l~~l~~--~~~~~~-----~~~~l~~~l~~~~~~W~~~EA~~~a~ 477 (1023)
T 4hat_C 405 EVLVVENDEGEIVREFVKESDTIQLYKSEREVLVYLTHLNV--IDTEEI-----MISKLARQIDGSEWSWHNINTLSWAI 477 (1023)
T ss_dssp TCCEEECTTSCEEECSSCCGGGHHHHHHHHHHHHHHHHHCH--HHHHHH-----HHHHHHHHHSSTTCCHHHHHHHHHHH
T ss_pred ccccCCCCCccHHHHhccchHHHHHHHHHHHHHHHHhccCH--HHHHHH-----HHHHHHHHhcCCCCCHHHHHHHHHHH
Confidence 00 11 123333333311 111111 23333334443 5799999999999
Q ss_pred HHHhcCChhhHHHHHhcCChHHHHHHhcC-----CCHHHHHHHHHHHHHhhcCCCCchhhHhcCChHHHHHhhcCCChhH
Q 005044 316 GQFAATDSDCKVHIVQRGAVRPLIEMLQS-----PDVQLREMSAFALGRLAQDMHNQAGIAHNGGLVPLLKLLDSKNGSL 390 (717)
Q Consensus 316 ~~l~~~~~~~~~~l~~~~~l~~L~~~l~~-----~~~~v~~~a~~~L~~l~~~~~~~~~l~~~~~l~~L~~ll~~~~~~v 390 (717)
+.++.+.......-.-..+++.|++++.. +...++..++|+++..++--...... -...+..|++.++++++.+
T Consensus 478 gaIa~~~~~~~e~~~l~~vi~~Ll~l~~~~~~~d~k~~v~~t~~~~lGry~~wl~~~~~~-L~~vl~~L~~~l~~~~~~v 556 (1023)
T 4hat_C 478 GSISGTMSEDTEKRFVVTVIKDLLDLCVKKRGKDNKAVVASDIMYVVGQYPRFLKAHWNF-LRTVILKLFEFMHETHEGV 556 (1023)
T ss_dssp HHTTTSSCHHHHHHHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHTCHHHHHHCHHH-HHHHHHHHHHHTTCSCHHH
T ss_pred HHHHcCCCchhHHHHHHHHHHHHHHhhhccccCcchHHHHHHHHHHHHHHHHHHhccHHH-HHHHHHHHHHHhhcCCHHH
Confidence 99975443322222223467778887753 33446667889999877522111111 1123444555556778899
Q ss_pred HHHHHHHHHhccC
Q 005044 391 QHNAAFALYGLAD 403 (717)
Q Consensus 391 ~~~a~~~L~~l~~ 403 (717)
+..|++++.+|+.
T Consensus 557 ~~~A~~al~~l~~ 569 (1023)
T 4hat_C 557 QDMACDTFIKIVQ 569 (1023)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 9999999999985
No 125
>2x19_B Importin-13; nuclear transport, protein transport; HET: GTP; 2.80A {Homo sapiens} PDB: 2xwu_B
Probab=97.10 E-value=0.075 Score=61.88 Aligned_cols=339 Identities=12% Similarity=0.066 Sum_probs=177.0
Q ss_pred chHHHhHHHHHHHHhcCChhhHHHHHhCCChHHHHHHHhccccCCCccchhHHHHHHHHHHHHHhhcCchhhhHHHhcCC
Q 005044 129 EHEVEKGSAFALGLLAVKPEHQQLIVDNGALSHLVNLLKRHMDSNCSRAVNSVIRRAADAITNLAHENSSIKTRVRMEGG 208 (717)
Q Consensus 129 ~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~i~~L~~lL~~~~~~~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~ 208 (717)
++..++.++.+++.++...... ....++.++..+..-..+ . ..++..++++++.++..-..... .-...
T Consensus 462 ~w~~~eaal~al~~i~~~~~~~----~~~~l~~l~~~l~~l~~~--~---~~vr~~~~~~l~~~~~~l~~~~~--~l~~v 530 (963)
T 2x19_B 462 SWQHTEALLYGFQSIAETIDVN----YSDVVPGLIGLIPRISIS--N---VQLADTVMFTIGALSEWLADHPV--MINSV 530 (963)
T ss_dssp CHHHHHHHHHHHHHHTTSCCSS----CCSHHHHHHHHGGGSCCC--S---HHHHHHHHHHHHHTHHHHHHCHH--HHTTT
T ss_pred chHHHHHHHHHHHHHHhhcCch----hhHHHHHHHHHHHhCCCC--c---HHHHHHHHHHHHHHHHHHHhCHH--HHHHH
Confidence 4488999999999999321110 023345555554322110 0 16889999999998863222211 22467
Q ss_pred cHHHHHhhcCCCHHHHHHHHHHHHHhhccChhhHHHHHhcCCHHHHHHHHcC--CCHHHHHHHHHHHHHhhcCCh-HHHH
Q 005044 209 IPPLVELLEFTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRS--EDSAIHYEAVGVIGNLVHSSP-NIKK 285 (717)
Q Consensus 209 i~~L~~ll~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~g~i~~L~~ll~~--~~~~v~~~a~~~L~~l~~~~~-~~~~ 285 (717)
++.++..+.+ +.++..|+.+|.+++......-.... ..++..+..++.. -+...+..+..+++.++...+ ....
T Consensus 531 l~~l~~~l~~--~~V~~~A~~al~~l~~~~~~~l~p~~-~~il~~l~~~l~~~~~~~~~~~~~~eai~~i~~~~~~~~~~ 607 (963)
T 2x19_B 531 LPLVLHALGN--PELSVSSVSTLKKICRECKYDLPPYA-ANIVAVSQDVLMKQIHKTSQCMWLMQALGFLLSALQVEEIL 607 (963)
T ss_dssp HHHHHHHTTC--GGGHHHHHHHHHHHHHHTGGGCTTTH-HHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTSCHHHHH
T ss_pred HHHHHHHhCC--chHHHHHHHHHHHHHHHHHHHHHhhH-HHHHHHHHHHhccCCCChHHHHHHHHHHHHHHhcCCHHHHH
Confidence 8888888854 78999999999999963322111111 1234445556654 256888889999999875442 2222
Q ss_pred HHHHcCChHHHHHhhc----cC-ChHHHHH---HHHHHHHHhcCC----hh-----------------hHHHHHhcCChH
Q 005044 286 EVLAAGALQPVIGLLS----SC-CSESQRE---AALLLGQFAATD----SD-----------------CKVHIVQRGAVR 336 (717)
Q Consensus 286 ~~~~~g~l~~L~~ll~----~~-~~~~~~~---a~~~L~~l~~~~----~~-----------------~~~~l~~~~~l~ 336 (717)
..+ ..+++.+...+. .. +++.+.. ...+|+.+...- +. ....-....+++
T Consensus 608 ~~~-~~l~~~l~~~l~~~~~~~~~~~~~~~~~~~l~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 686 (963)
T 2x19_B 608 KNL-HSLISPYIQQLEKLAEEIPNPSNKLAIVHILGLLSNLFTTLDISHHEDDHEGPELRKLPVPQGPNPVVVVLQQVFQ 686 (963)
T ss_dssp HHH-HHHHHHHHHHHHHHHSSCSCHHHHHHHHHHHHHHHHHHHHCCSSCCC---------------CCCHHHHHHHHHHH
T ss_pred HHH-HHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHcCCCcccccccccccccCCCCCCCCchHHHHHHHHH
Confidence 222 234444444432 22 3444443 333343333110 00 001112234556
Q ss_pred HHHHHhcC--CCHHHHHHHHHHHHHhhcCCCCchhhHhcCChHHHHHhh----c-CCChhHHHHHHHHHHhccCCCcchH
Q 005044 337 PLIEMLQS--PDVQLREMSAFALGRLAQDMHNQAGIAHNGGLVPLLKLL----D-SKNGSLQHNAAFALYGLADNEDNVA 409 (717)
Q Consensus 337 ~L~~~l~~--~~~~v~~~a~~~L~~l~~~~~~~~~l~~~~~l~~L~~ll----~-~~~~~v~~~a~~~L~~l~~~~~~~~ 409 (717)
.+..++.. .++.+.+.++.++..++..-.... ...+++++..+ . ...+.+.......+......+....
T Consensus 687 ~~~~~l~~~~~~~~v~e~~~~~l~~~~~~~~~~~----~~~l~~~~~~l~~~~~~~~~~~~l~l~~~li~~f~~~~~~~~ 762 (963)
T 2x19_B 687 LIQKVLSKWLNDAQVVEAVCAIFEKSVKTLLDDF----APMVPQLCEMLGRMYSTIPQASALDLTRQLVHIFAHEPAHFP 762 (963)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHSSSTT----GGGHHHHHHHHHHHHHHSCCHHHHHHHHHHHHHHTTCTTTCH
T ss_pred HHHHHHHhccCchHHHHHHHHHHHHHHHhhcccc----cccHHHHHHHHHHHHHcCCccHHHHHHHHHHHHhCCCcchHH
Confidence 66666643 577899999999998875222110 12244444332 1 1223222222222222111111100
Q ss_pred HHHHhcCccccccchhHHhhhHHHHHHHHHHHHHHhhhchHHHHHHHHhh---cchhHHHHHHHHHHhccCCCCCceeee
Q 005044 410 DFIRVGGVQKLQDGEFIVQATKDCVAKTLKRLEEKIHGRVLNHLLYLMRV---AEKGVQRRVALALAHLCSPDDQRTIFI 486 (717)
Q Consensus 410 ~l~~~~~i~~L~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~L~~ll~~---~~~~v~~~a~~aL~~l~~~~~~~~~~~ 486 (717)
.+.. .+ ..++...+.++.. ..|+++......|..+....... +.
T Consensus 763 ~~~~-----------------------~l--------~~~~~~~l~~~~~~~~~~pd~~~~~f~ll~~~~~~~~~~--~~ 809 (963)
T 2x19_B 763 PIEA-----------------------LF--------LLVTSVTLTLFQQGPRDHPDIVDSFMQLLAQALKRKPDL--FL 809 (963)
T ss_dssp HHHH-----------------------HH--------HHHHHHHHHHHHHCTTTCHHHHHHHHHHHHHHHHHCGGG--GG
T ss_pred HHHH-----------------------HH--------HHHHHHHHHHHhhCcccCchHHHHHHHHHHHHHHhCcHH--Hc
Confidence 0000 00 0123333444442 35888888888888775332211 11
Q ss_pred cCC-----CHHHHHHHhcCCCchhhhhhHHHHHHhhhc
Q 005044 487 DGG-----GLELLLGLLGSTNPKQQLDGAVALFKLANK 519 (717)
Q Consensus 487 ~~~-----~l~~L~~ll~~~~~~v~~~a~~~l~~L~~~ 519 (717)
... .++.+...+.+.+..+...++..+.++...
T Consensus 810 ~~~~~~~~i~~~~~~~l~~~~~~~~~~~l~~l~~l~~~ 847 (963)
T 2x19_B 810 CERLDVKAVFQCAVLALKFPEAPTVKASCGFFTELLPR 847 (963)
T ss_dssp CTTSCHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHGGG
T ss_pred CCcccHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHhc
Confidence 112 344556667788888999999999998864
No 126
>2x19_B Importin-13; nuclear transport, protein transport; HET: GTP; 2.80A {Homo sapiens} PDB: 2xwu_B
Probab=97.05 E-value=0.015 Score=67.94 Aligned_cols=330 Identities=10% Similarity=0.010 Sum_probs=168.0
Q ss_pred HHHhHHHHHHHHhcCChhhHHHHHhCCChHHHHHHHhccccCCCccchhHHHHHHHHHHHHHhhcCchh--hhHHH---h
Q 005044 131 EVEKGSAFALGLLAVKPEHQQLIVDNGALSHLVNLLKRHMDSNCSRAVNSVIRRAADAITNLAHENSSI--KTRVR---M 205 (717)
Q Consensus 131 ~v~~~a~~~L~~l~~~~~~~~~~~~~~~i~~L~~lL~~~~~~~~~~~~~~~~~~a~~~L~~l~~~~~~~--~~~~~---~ 205 (717)
.++..+++++.....-.... ......++.+.+.+.. + +++..++.++..+....... ...+. .
T Consensus 217 ~~~~~~l~~l~~wi~~~~~~--~~~~~ll~~l~~~l~~--~--------~~~~~a~~~l~~i~~~~~~~~~~~~~~~l~~ 284 (963)
T 2x19_B 217 CVRQKVLKCFSSWVQLEVPL--QDCEALIQAAFAALQD--S--------ELFDSSVEAIVNAISQPDAQRYVNTLLKLIP 284 (963)
T ss_dssp HHHHHHHHHHHHHHTSSCCG--GGTHHHHHHHHHHTTS--T--------TTHHHHHHHHHHHHTCTTGGGCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCCCc--ccchHHHHHHHHHhCC--c--------hHHHHHHHHHHHHHcccccccCHHHHHHHHH
Confidence 47777777776554210000 0012234555555531 1 78888999999988743211 11110 0
Q ss_pred --cCCcHHHHHhhcCCCHHHHHHHHHHHHHhhccChh-------hHHHHHhcCCHHHHHHHHcC-----CCHHHHHHHHH
Q 005044 206 --EGGIPPLVELLEFTDTKVQRAAAGALRTLAFKNDE-------NKNQIVECNALPTLILMLRS-----EDSAIHYEAVG 271 (717)
Q Consensus 206 --~~~i~~L~~ll~~~~~~v~~~a~~~L~~L~~~~~~-------~~~~~~~~g~i~~L~~ll~~-----~~~~v~~~a~~ 271 (717)
.+..+.+...+...+.+.....+..+..++..... ....+ ..+++.++.+... .++++...++.
T Consensus 285 ~~~~~~~~~~~~~~~~d~~~~~~~~~l~~~~~~~~~~~l~~~~~~~~~~--~~~l~~ll~~~~~~~~~~~~~~v~~~~l~ 362 (963)
T 2x19_B 285 LVLGLQEQLRQAVQNGDMETSHGICRIAVALGENHSRALLDQVEHWQSF--LALVNMIMFCTGIPGHYPVNETTSSLTLT 362 (963)
T ss_dssp HHHTTHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHCGGGHHHH--HHHHHHHHHHHTCSSCTTTTCGGGGGGHH
T ss_pred HHHhhHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhHHHHHcCccchHHH--HHHHHHHHHHHcCCCCCCchhhhhhhhHH
Confidence 01112222223345556666667777766542111 01111 1345566666554 35566666777
Q ss_pred HHHHhhcCC--------hHHHHHHHH---cCChHHHHHhhccCCh---------------HHHHHHHHHHHHHhcCChhh
Q 005044 272 VIGNLVHSS--------PNIKKEVLA---AGALQPVIGLLSSCCS---------------ESQREAALLLGQFAATDSDC 325 (717)
Q Consensus 272 ~L~~l~~~~--------~~~~~~~~~---~g~l~~L~~ll~~~~~---------------~~~~~a~~~L~~l~~~~~~~ 325 (717)
.+..++... +.. ..... ..+++.++..+..++. +.|..+..+|..++...+.
T Consensus 363 fw~~l~~~~~~~~~~~~~~~-~~~~~~~l~~l~~~ll~~~~~p~~~~~~~~~~de~~~~~~~r~~~~~~L~~~~~~~~~- 440 (963)
T 2x19_B 363 FWYTLQDDILSFEAEKQAVY-QQVYRPVYFQLVDVLLHKAQFPSDEEYGFWSSDEKEQFRIYRVDISDTLMYVYEMLGA- 440 (963)
T ss_dssp HHHHHHHHHTTSCHHHHHHH-HHHHHHHHHHHHHHHHHHHSCCCHHHHHTSCHHHHHHHHHHHHHHHHHHHHHHHHHTH-
T ss_pred HHHHHHHHHHhhhhhhhHHH-HHHHHHHHHHHHHHHHHHHcCCCcccccCCChhHHHHHHHHHHHHHHHHHHHHHHccH-
Confidence 766665410 111 11111 1234444444432211 1234444455555421111
Q ss_pred HHHHHhcCChHHHHHHh----cCCCHHHHHHHHHHHHHhhcCCCCchhhHhcCChHHHHHhh---cCCChhHHHHHHHHH
Q 005044 326 KVHIVQRGAVRPLIEML----QSPDVQLREMSAFALGRLAQDMHNQAGIAHNGGLVPLLKLL---DSKNGSLQHNAAFAL 398 (717)
Q Consensus 326 ~~~l~~~~~l~~L~~~l----~~~~~~v~~~a~~~L~~l~~~~~~~~~l~~~~~l~~L~~ll---~~~~~~v~~~a~~~L 398 (717)
.+. .-+++.+...+ .+.+...++.++++++.++....... ...++.+++.+ .++++.++..+++++
T Consensus 441 --~~l-~~~~~~l~~~l~~~~~~~~w~~~eaal~al~~i~~~~~~~~----~~~l~~l~~~l~~l~~~~~~vr~~~~~~l 513 (963)
T 2x19_B 441 --ELL-SNLYDKLGRLLTSSEEPYSWQHTEALLYGFQSIAETIDVNY----SDVVPGLIGLIPRISISNVQLADTVMFTI 513 (963)
T ss_dssp --HHH-HHHHHHHHHHHHTCCCSCCHHHHHHHHHHHHHHTTSCCSSC----CSHHHHHHHHGGGSCCCSHHHHHHHHHHH
T ss_pred --HHH-HHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHhhcCchh----hHHHHHHHHHHHhCCCCcHHHHHHHHHHH
Confidence 010 11233444444 45688899999999999997543211 12334444443 335788999999999
Q ss_pred HhccCCCcchHHHHHhcCccccccchhHHhhhHHHHHHHHHHHHHHhhhchHHHHHHHHhhcchhHHHHHHHHHHhccCC
Q 005044 399 YGLADNEDNVADFIRVGGVQKLQDGEFIVQATKDCVAKTLKRLEEKIHGRVLNHLLYLMRVAEKGVQRRVALALAHLCSP 478 (717)
Q Consensus 399 ~~l~~~~~~~~~l~~~~~i~~L~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~L~~ll~~~~~~v~~~a~~aL~~l~~~ 478 (717)
..++..-..... .-..+++.++..|++ +.++..|+.+|.+++..
T Consensus 514 ~~~~~~l~~~~~----------------------------------~l~~vl~~l~~~l~~--~~V~~~A~~al~~l~~~ 557 (963)
T 2x19_B 514 GALSEWLADHPV----------------------------------MINSVLPLVLHALGN--PELSVSSVSTLKKICRE 557 (963)
T ss_dssp HHTHHHHHHCHH----------------------------------HHTTTHHHHHHHTTC--GGGHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCHH----------------------------------HHHHHHHHHHHHhCC--chHHHHHHHHHHHHHHH
Confidence 988742110001 112367777777754 88999999999999853
Q ss_pred CCCceeeecCCCHHHHHHHhcCC--CchhhhhhHHHHHHhhhc
Q 005044 479 DDQRTIFIDGGGLELLLGLLGST--NPKQQLDGAVALFKLANK 519 (717)
Q Consensus 479 ~~~~~~~~~~~~l~~L~~ll~~~--~~~v~~~a~~~l~~L~~~ 519 (717)
-...-.-.-...+..|..++... +...+..+..++..++..
T Consensus 558 ~~~~l~p~~~~il~~l~~~l~~~~~~~~~~~~~~eai~~i~~~ 600 (963)
T 2x19_B 558 CKYDLPPYAANIVAVSQDVLMKQIHKTSQCMWLMQALGFLLSA 600 (963)
T ss_dssp TGGGCTTTHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHhhHHHHHHHHHHHhccCCCChHHHHHHHHHHHHHHhc
Confidence 22110001123344455566542 456777778888877753
No 127
>4ffb_C Protein STU2; tubulin fold, heat repeats, cytoskeleton, microtubule, tubul domain, hydrolase; HET: GTP; 2.88A {Saccharomyces cerevisiae}
Probab=97.02 E-value=0.013 Score=57.00 Aligned_cols=189 Identities=12% Similarity=0.082 Sum_probs=124.8
Q ss_pred cHHHHHhhcCCCHHHHHHHHHHHHHhhccChhhH--HHHH--hcCCHHHHHHHHcCCCHHHHHHHHHHHHHhhcCChH--
Q 005044 209 IPPLVELLEFTDTKVQRAAAGALRTLAFKNDENK--NQIV--ECNALPTLILMLRSEDSAIHYEAVGVIGNLVHSSPN-- 282 (717)
Q Consensus 209 i~~L~~ll~~~~~~v~~~a~~~L~~L~~~~~~~~--~~~~--~~g~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~-- 282 (717)
+| |-+-|.+.++..|..++..|..+....+... .... -....+.+-..+.+.+..++..++.++..++.....
T Consensus 12 lp-l~e~l~sk~WK~R~eale~l~~~~~~~~~~~~~~~~~~~~~~~~~~lkk~l~DsN~~v~~~al~~l~~~~~~~~~~~ 90 (278)
T 4ffb_C 12 LP-LEERLTYKLWKARLEAYKELNQLFRNSVGDISRDDNIQIYWRDPTLFAQYITDSNVVAQEQAIVALNSLIDAFASSS 90 (278)
T ss_dssp CC-HHHHTTCSSHHHHHHHHHHHHHHHHTC----------CCTTSCTHHHHHHTTCSSHHHHHHHHHHHHHHHTTCC---
T ss_pred CC-HHHhcccCcHHHHHHHHHHHHHHHhhCcccccchhHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHhhhhh
Confidence 45 6678889999999999999998875332211 1111 123456677788899999999999999988653211
Q ss_pred ---HHHHHHHcCChHHHHH-hhccCChHHHHHHHHHHHHHhcCChhhHHHHHhcCChHHHHHHhcCCCHHHHHHHHHHHH
Q 005044 283 ---IKKEVLAAGALQPVIG-LLSSCCSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQSPDVQLREMSAFALG 358 (717)
Q Consensus 283 ---~~~~~~~~g~l~~L~~-ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~l~~~~~l~~L~~~l~~~~~~v~~~a~~~L~ 358 (717)
......-..+++.|+. .+.+....++..+..++..++...... ..+++.+...+.+.+|.++..++..|.
T Consensus 91 ~~~~~~~~~~~~~l~~lveK~l~~~k~~~~~~a~~~l~~~~~~~~~~------~~~~e~l~~~l~~Knpkv~~~~l~~l~ 164 (278)
T 4ffb_C 91 LKNAHNITLISTWTPLLVEKGLTSSRATTKTQSMSCILSLCGLDTSI------TQSVELVIPFFEKKLPKLIAAAANCVY 164 (278)
T ss_dssp CCHHHHHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHTSSSS------HHHHHHHGGGGGCSCHHHHHHHHHHHH
T ss_pred cccchhHHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHhcCcH------HHHHHHHHHHHhccCHHHHHHHHHHHH
Confidence 1111222345666665 467777888888888777765322111 112456777788899999999999998
Q ss_pred HhhcCC--CCc-hhhHhcCChHHHHHhhcCCChhHHHHHHHHHHhccCC
Q 005044 359 RLAQDM--HNQ-AGIAHNGGLVPLLKLLDSKNGSLQHNAAFALYGLADN 404 (717)
Q Consensus 359 ~l~~~~--~~~-~~l~~~~~l~~L~~ll~~~~~~v~~~a~~~L~~l~~~ 404 (717)
.+.... ... ....-..+++.+..++.+.++.||..|..++..+...
T Consensus 165 ~~l~~fg~~~~~~k~~l~~i~~~l~k~l~d~~~~VR~aA~~l~~~ly~~ 213 (278)
T 4ffb_C 165 ELMAAFGLTNVNVQTFLPELLKHVPQLAGHGDRNVRSQTMNLIVEIYKV 213 (278)
T ss_dssp HHHHHHTTTTCCHHHHHHHHGGGHHHHHTCSSHHHHHHHHHHHHHHHTC
T ss_pred HHHHHhCCCcCCchhHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHH
Confidence 887532 111 1111123455677888999999999999999888653
No 128
>2of3_A ZYG-9; multifunctional macromolecule, kinetochore, microtubule, XMAP215, STU2, DIS1, microtubule associated protein, structural protein; 1.90A {Caenorhabditis elegans}
Probab=96.93 E-value=0.039 Score=52.11 Aligned_cols=178 Identities=11% Similarity=0.056 Sum_probs=121.6
Q ss_pred HHHHHhhcCCCHHHHHHHHHHHHHhhccChhhHHHHHhcCCHHHHHHHH----cCCCHHHHHHHHHHHHHhhcCChHH--
Q 005044 210 PPLVELLEFTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILML----RSEDSAIHYEAVGVIGNLVHSSPNI-- 283 (717)
Q Consensus 210 ~~L~~ll~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~g~i~~L~~ll----~~~~~~v~~~a~~~L~~l~~~~~~~-- 283 (717)
+.+...+-+.+..-+..++..|......+++ .+.. .++.+++.+ .+.+..+...++.+|..+...-...
T Consensus 49 ~~~~~~lfs~d~k~~~~ale~L~~~l~~~~~---~~~~--~lDll~kw~~lr~~d~N~~v~~~~L~~L~~l~~~l~~~~y 123 (266)
T 2of3_A 49 VSLMSQLFHKDFKQHLAALDSLVRLADTSPR---SLLS--NSDLLLKWCTLRFFETNPAALIKVLELCKVIVELIRDTET 123 (266)
T ss_dssp HHHHHHHTCSCHHHHHHHHHHHHHHHHHCHH---HHHH--THHHHHHHHHHHTTSCCHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHhcCCCHHHHHHHHHHHHHHhhhChH---HHHH--HHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHhccc
Confidence 4556666677888888888888776643332 2222 234444433 3779999999988888874210000
Q ss_pred -HHHHHHcCChHHHHHhhccCChHHHHHHHHHHHHHhcCChhhHHHHHhcCChHHHHHHhcCCCHHHHHHHHHHHHHhhc
Q 005044 284 -KKEVLAAGALQPVIGLLSSCCSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQSPDVQLREMSAFALGRLAQ 362 (717)
Q Consensus 284 -~~~~~~~g~l~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~l~~~~~l~~L~~~l~~~~~~v~~~a~~~L~~l~~ 362 (717)
-..-...-++|.|+.-+.+....+|..+-.++..++.-.+ -..+++.+++-+++.++.+|..++..+..+..
T Consensus 124 ~~~~~ea~~~lP~LveKlGd~k~~vR~~~r~il~~l~~v~~-------~~~v~~~l~~g~ksKN~R~R~e~l~~l~~li~ 196 (266)
T 2of3_A 124 PMSQEEVSAFVPYLLLKTGEAKDNMRTSVRDIVNVLSDVVG-------PLKMTPMLLDALKSKNARQRSECLLVIEYYIT 196 (266)
T ss_dssp CCCHHHHHHHHHHHHHGGGCSSHHHHHHHHHHHHHHHHHHC-------HHHHHHHHHHGGGCSCHHHHHHHHHHHHHHHH
T ss_pred cchHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHHCC-------HHHHHHHHHHHHccCCHHHHHHHHHHHHHHHH
Confidence 0000012368999999999888899888877777653111 12356778888899999999999999999875
Q ss_pred CCCCchhhHhcCCh---HHHHHhhcCCChhHHHHHHHHHHhccC
Q 005044 363 DMHNQAGIAHNGGL---VPLLKLLDSKNGSLQHNAAFALYGLAD 403 (717)
Q Consensus 363 ~~~~~~~l~~~~~l---~~L~~ll~~~~~~v~~~a~~~L~~l~~ 403 (717)
..... ...++ +.+.+++.+.+..||..|..++..+-.
T Consensus 197 ~~G~~----~~~~l~~~~~ia~ll~D~d~~VR~aAl~~lve~y~ 236 (266)
T 2of3_A 197 NAGIS----PLKSLSVEKTVAPFVGDKDVNVRNAAINVLVACFK 236 (266)
T ss_dssp HHCSG----GGGGGCHHHHHGGGGGCSSHHHHHHHHHHHHHHHH
T ss_pred hcCCC----ccccccchHHHHHHHcCCCHHHHHHHHHHHHHHHH
Confidence 33222 23467 889999999999999999999987653
No 129
>3drx_A BTB/POZ domain-containing protein KCTD5; golgi, grAsp55, potassium channel domain T1, pentameric assembly, HOST-virus interaction, nucleus; 3.11A {Homo sapiens} PDB: 3dry_A
Probab=96.92 E-value=0.0014 Score=58.35 Aligned_cols=95 Identities=17% Similarity=0.253 Sum_probs=74.9
Q ss_pred ccEEEEEcCeEeehhHHHHhhcc-HHHHHhhcCCCC----CCCCcceEcCCCCHHHHHHHHHHHhcCccccchhh-HHHH
Q 005044 550 SDVTFLVEGRRFYAHRICLLASS-DAFRAMFDGGYR----EKDARDIEIPNIRWEVFELMMRFIYTGSVDVTLDI-AQDL 623 (717)
Q Consensus 550 ~Dv~~~~~~~~~~~h~~il~~~s-~~f~~~~~~~~~----e~~~~~i~l~~~~~~~~~~~l~~~Yt~~~~~~~~~-~~~l 623 (717)
.-|.+.|+|..|...+..|.... .+|..||.+... ....+.+.+ |-++..|+.+|+|+-+|.+.++.+. ...+
T Consensus 12 ~~V~LNVGG~~F~Tt~sTL~r~PdS~L~~lfs~~~~~~~~~De~geyFI-DRDP~~F~~ILnyLRtG~L~lP~~~~~~~l 90 (202)
T 3drx_A 12 KWVRLNVGGTYFLTTRQTLCRDPKSFLYRLCQADPDLDSDKDETGAYLI-DRDPTYFGPVLNYLRHGKLVINKDLAEEGV 90 (202)
T ss_dssp CEEEEEETTEEEEEETTGGGSCTTSSTHHHHSCCCC----BCTTCCEEE-CSCSTTHHHHHHHHHHSCCCCCTTSCHHHH
T ss_pred CEEEEEECCEEEEEeHHHHhCCCcchHHHHhcCccccCcccCCCccEEe-cCChHHHHHHHHHhcCCccCCCCCCCHHHH
Confidence 34678999999999999998765 378888876421 112345555 6799999999999999999875543 4679
Q ss_pred HHHHHhhChHhHHHHHHHHHHh
Q 005044 624 LRAADQYLLEGLKRLCEYTIAQ 645 (717)
Q Consensus 624 l~~A~~~~~~~l~~~c~~~l~~ 645 (717)
+.-|++|+++.|.+.|.+.+..
T Consensus 91 ~eEA~FygL~~Lv~~l~~~i~e 112 (202)
T 3drx_A 91 LEEAEFYNITSLIKLVKDKIRE 112 (202)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHCCcHHHHHHHHHHHHH
Confidence 9999999999999999887754
No 130
>1lrv_A LRV, leucine-rich repeat variant; leucine-rich repeats, repetitive structure, iron sulfur proteins, nitrogen fixation; 2.60A {Azotobacter vinelandii} SCOP: a.118.1.5
Probab=96.92 E-value=0.00071 Score=63.62 Aligned_cols=116 Identities=21% Similarity=0.163 Sum_probs=74.1
Q ss_pred HHHHhhcCCCHHHHHHHHHHHHHhhccChhhHHHHHhcCCHHHHHHHHcCCCHHHHHHHHHHHHHhhcCChHHHHHHHHc
Q 005044 211 PLVELLEFTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSEDSAIHYEAVGVIGNLVHSSPNIKKEVLAA 290 (717)
Q Consensus 211 ~L~~ll~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~ 290 (717)
.+..+++++++.||..++.. +. .+.+..+++++++.||..++.. +
T Consensus 126 ~L~~L~~D~d~~VR~~aA~~---l~---------------~~~l~~l~~D~d~~VR~~aa~~---l-------------- 170 (244)
T 1lrv_A 126 QLEQMAADRDYLVRAYVVQR---IP---------------PGRLFRFMRDEDRQVRKLVAKR---L-------------- 170 (244)
T ss_dssp GGGGGTTCSSHHHHHHHHHH---SC---------------GGGGGGTTTCSCHHHHHHHHHH---S--------------
T ss_pred HHHHHHcCCCHHHHHHHHHh---cC---------------HHHHHHHHcCCCHHHHHHHHHc---C--------------
Confidence 34555677777777777652 11 1234456677778888777764 1
Q ss_pred CChHHHHHhhccCChHHHHHHHHHHHHHhcCChhhHHHHHhcCChHHHHHHhcCCCHHHHHHHHHHHHHhhcCCCCchhh
Q 005044 291 GALQPVIGLLSSCCSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQSPDVQLREMSAFALGRLAQDMHNQAGI 370 (717)
Q Consensus 291 g~l~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~l~~~~~l~~L~~~l~~~~~~v~~~a~~~L~~l~~~~~~~~~l 370 (717)
..+.+..++.++++.||..++..+ ..+.|..++.++++.||..++..+.
T Consensus 171 -~~~ll~~ll~D~d~~VR~aaa~~l------------------~~~~L~~Ll~D~d~~VR~~aa~~l~------------ 219 (244)
T 1lrv_A 171 -PEESLGLMTQDPEPEVRRIVASRL------------------RGDDLLELLHDPDWTVRLAAVEHAS------------ 219 (244)
T ss_dssp -CGGGGGGSTTCSSHHHHHHHHHHC------------------CGGGGGGGGGCSSHHHHHHHHHHSC------------
T ss_pred -CHHHHHHHHcCCCHHHHHHHHHhC------------------CHHHHHHHHcCCCHHHHHHHHHcCC------------
Confidence 113344667777888888777542 1245777788888888888777642
Q ss_pred HhcCChHHHHHhhcCCChhHHHHHHHHH
Q 005044 371 AHNGGLVPLLKLLDSKNGSLQHNAAFAL 398 (717)
Q Consensus 371 ~~~~~l~~L~~ll~~~~~~v~~~a~~~L 398 (717)
.+.|..+ .+.++.|+..+...|
T Consensus 220 -----~~~L~~L-~D~~~~VR~aa~~~L 241 (244)
T 1lrv_A 220 -----LEALREL-DEPDPEVRLAIAGRL 241 (244)
T ss_dssp -----HHHHHHC-CCCCHHHHHHHHCCC
T ss_pred -----HHHHHHc-cCCCHHHHHHHHHHh
Confidence 2445555 888888888876543
No 131
>1upk_A MO25 protein; transferase, armadillo; HET: MSE; 1.85A {Homo sapiens} SCOP: a.118.1.15 PDB: 1upl_A 2wtk_A* 3gni_A*
Probab=96.91 E-value=0.041 Score=53.02 Aligned_cols=206 Identities=16% Similarity=0.149 Sum_probs=151.7
Q ss_pred HHHhcCCcHHHHHhhcCCCHHHHHHHHHHHHHhhccChhh----HHHHHh-cCCHHHHHHHHcCCCHHHHHHHHHHHHHh
Q 005044 202 RVRMEGGIPPLVELLEFTDTKVQRAAAGALRTLAFKNDEN----KNQIVE-CNALPTLILMLRSEDSAIHYEAVGVIGNL 276 (717)
Q Consensus 202 ~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~L~~~~~~~----~~~~~~-~g~i~~L~~ll~~~~~~v~~~a~~~L~~l 276 (717)
.+...+.+..|+..+..=+.+.|..+..++.++....... ...+.. ..++..|+..- +++++...+-..|..+
T Consensus 73 ei~~~dll~~Li~~l~~L~fE~RKd~~~if~~llr~~~~~~~p~v~Yl~~~peil~~L~~gY--e~~diAl~~G~mLRec 150 (341)
T 1upk_A 73 ELYNSGLLSTLVADLQLIDFEGKKDVAQIFNNILRRQIGTRTPTVEYICTQQNILFMLLKGY--ESPEIALNCGIMLREC 150 (341)
T ss_dssp HHHHHSHHHHHHHTGGGSCHHHHHHHHHHHHHHHTCCBTTBCHHHHHHHTCTHHHHHHHHGG--GSTTTHHHHHHHHHHH
T ss_pred HHHHhCHHHHHHHhcccCCchhhccHHHHHHHHHhcccCCCCchhHHHHcCHHHHHHHHHhh--ccchhHhHHHHHHHHH
Confidence 3455677888898888889999999999999998744332 222222 22233333333 3556677777777777
Q ss_pred hcCChHHHHHHHHcCChHHHHHhhccCChHHHHHHHHHHHHHhcCChhhHHHHHhc---CChHHHHHHhcCCCHHHHHHH
Q 005044 277 VHSSPNIKKEVLAAGALQPVIGLLSSCCSESQREAALLLGQFAATDSDCKVHIVQR---GAVRPLIEMLQSPDVQLREMS 353 (717)
Q Consensus 277 ~~~~~~~~~~~~~~g~l~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~l~~~---~~l~~L~~~l~~~~~~v~~~a 353 (717)
.. .+...+.+...+.+-.+.+.+..++-++...|..++..+-.........++.. .++...-.++.+++.-++..+
T Consensus 151 ir-~e~la~~iL~~~~f~~fF~yv~~~~FdiasDAf~TfkelLt~Hk~lvaefL~~nyd~Ff~~y~~Ll~S~NYVTkRQS 229 (341)
T 1upk_A 151 IR-HEPLAKIILWSEQFYDFFRYVEMSTFDIASDAFATFKDLLTRHKLLSAEFLEQHYDRFFSEYEKLLHSENYVTKRQS 229 (341)
T ss_dssp HT-SHHHHHHHHHSGGGGHHHHHTTCSSHHHHHHHHHHHHHHHHSSHHHHHHHHHHTHHHHHHHHHHHTTCSSHHHHHHH
T ss_pred HH-hHHHHHHHhccHHHHHHHHHhcCCCchHHHHHHHHHHHHHhccHHHHHHHHHHhHHHHHHHHHHHhcCCcchhHHHH
Confidence 65 46667888888888899999999999999999999888865544444444443 356778888999999999999
Q ss_pred HHHHHHhhcCCCCchh----hHhcCChHHHHHhhcCCChhHHHHHHHHHHhccCCCcchHH
Q 005044 354 AFALGRLAQDMHNQAG----IAHNGGLVPLLKLLDSKNGSLQHNAAFALYGLADNEDNVAD 410 (717)
Q Consensus 354 ~~~L~~l~~~~~~~~~----l~~~~~l~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~ 410 (717)
+..|+.|..+..|... +.+..-+..++.+|.+.+..++..|..+..-...++...+.
T Consensus 230 lKLLgelLldr~N~~vM~~Yis~~~nLkl~M~LL~d~sk~Iq~EAFhVFKvFVANP~K~~~ 290 (341)
T 1upk_A 230 LKLLGELLLDRHNFTIMTKYISKPENLKLMMNLLRDKSRNIQFEAFHVFKVFVANPNKTQP 290 (341)
T ss_dssp HHHHHHHHHSGGGHHHHHHHTTCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHHCSSCCHH
T ss_pred HHHHHHHHhCchHHHHHHHHhCCHHHHHHHHHHhcCchhchhhhhhhheeeeeeCCCCChH
Confidence 9999999988777543 33445577889999999999999999998888776655443
No 132
>3oc3_A Helicase MOT1, MOT1; regulation of transcription, hydrolase-transc complex; HET: MES; 3.10A {Encephalitozoon cuniculi}
Probab=96.85 E-value=0.0015 Score=66.59 Aligned_cols=236 Identities=18% Similarity=0.118 Sum_probs=147.0
Q ss_pred HHHhHHHHHHHHhc-CChh--hHHHHHhCCChHHHHHHH--hccccCCCccchhHHHHHHHHHHHHHhhcCchhhhHHHh
Q 005044 131 EVEKGSAFALGLLA-VKPE--HQQLIVDNGALSHLVNLL--KRHMDSNCSRAVNSVIRRAADAITNLAHENSSIKTRVRM 205 (717)
Q Consensus 131 ~v~~~a~~~L~~l~-~~~~--~~~~~~~~~~i~~L~~lL--~~~~~~~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~ 205 (717)
++|..|+-.|..+. .... .+.........-.++.++ .+-.+-...+.+..+++.|+.+|+.+ ..-+..
T Consensus 189 EiRHGAALGLREILR~hG~GAGR~~~~N~DLAvRLLCVLALDRFGDYVSDqVVAPVRETaAQtLGaL-~hLp~e------ 261 (800)
T 3oc3_A 189 YKRHGAFLAFAAMFSEIDNGGDIQIRVDSKLFSKIYEILVTDKFNDFVDDRTVAPVRDAAAYLLSRI-YPLIGP------ 261 (800)
T ss_dssp HHHHHHHHHHHHHHHHCC----CCCCCCTTHHHHHHHHHHHBCCBBCSSSSCBCHHHHHHHHHHHHH-TTTSCS------
T ss_pred hhhhHHHHHHHHHHHHhccCCceeccccHHHHHHHHHHHHhccccccccCeeeeehHHHHHHHHHHH-HhCChh------
Confidence 99999999998887 1110 000000001122233222 22222122234448999999999998 533322
Q ss_pred cCCcHHHHHhhcCCCHHHHHHHHHHHHHhhccChhhHHHHHhcCCHHHHHHHHcCCCHHHHHHHHHHHHHhhcCChHHHH
Q 005044 206 EGGIPPLVELLEFTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSEDSAIHYEAVGVIGNLVHSSPNIKK 285 (717)
Q Consensus 206 ~~~i~~L~~ll~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~ 285 (717)
..++..++..+..+.++++..++-.|..+.. --. . -.++++.++..|.+.+++|+..|+.+|.-++ .....
T Consensus 262 ~~IL~qLV~~l~~~~WEVRHGGLLGLKYL~D-LL~---~--Ld~Vv~aVL~GL~D~DDDVRAVAAetLiPIA-~p~~l-- 332 (800)
T 3oc3_A 262 NDIIEQLVGFLDSGDWQVQFSGLIALGYLKE-FVE---D--KDGLCRKLVSLLSSPDEDIKLLSAELLCHFP-ITDSL-- 332 (800)
T ss_dssp CCHHHHHTTGGGCSCHHHHHHHHHHHHHTGG-GCC---C--HHHHHHHHHHHTTCSSHHHHHHHHHHHTTSC-CSSTH--
T ss_pred HHHHHHHHhhcCCCCeeehhhhHHHHHHHHH-HHH---H--HHHHHHHHHhhcCCcccHHHHHHHHHhhhhc-chhhH--
Confidence 2334455555678899999999999999821 111 1 2356788889999999999999999999987 21111
Q ss_pred HHHHcCChHHHHHhhccCC--hHHHHHHHHHHHHHhcCChhhHHHHHhcCChHHHHHHhcCCCHHHHHHHHHHHHHhhcC
Q 005044 286 EVLAAGALQPVIGLLSSCC--SESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQSPDVQLREMSAFALGRLAQD 363 (717)
Q Consensus 286 ~~~~~g~l~~L~~ll~~~~--~~~~~~a~~~L~~l~~~~~~~~~~l~~~~~l~~L~~~l~~~~~~v~~~a~~~L~~l~~~ 363 (717)
..++..+...|.+-+ ..........|+.+++..... -.....+|.|...++++-+.||.+++.+|..+.
T Consensus 333 ----~~LL~iLWd~L~~LDDLSASTgSVMdLLAkL~s~p~~a---~~dp~LVPRL~PFLRHtITSVR~AVL~TL~tfL-- 403 (800)
T 3oc3_A 333 ----DLVLEKCWKNIESEELISVSKTSNLSLLTKIYRENPEL---SIPPERLKDIFPCFTSPVPEVRTSILNMVKNLS-- 403 (800)
T ss_dssp ----HHHHHHHHHHHHTCCSCCTTHHHHHHHHHHHHHHCTTC---CCCSGGGGGTGGGGTCSSHHHHHHHHHHTTTCC--
T ss_pred ----HHHHHHHHHHhhhhcccchhhHHHHHHHHHHHcCCccc---ccChHHHHHHHhhhcCCcHHHHHHHHHHHHHHH--
Confidence 123455566665432 223334455666666543211 112478899999999999999999999987776
Q ss_pred CCCchhhHhcCChHH-HHHhhcCCChhHHHHHHHHHH
Q 005044 364 MHNQAGIAHNGGLVP-LLKLLDSKNGSLQHNAAFALY 399 (717)
Q Consensus 364 ~~~~~~l~~~~~l~~-L~~ll~~~~~~v~~~a~~~L~ 399 (717)
...++.. +.+++-..+.+++..+..+..
T Consensus 404 --------~~~~LRLIFQNILLE~neeIl~lS~~VWk 432 (800)
T 3oc3_A 404 --------EESIDFLVAEVVLIEEKDEIREMAIKLLK 432 (800)
T ss_dssp --------CHHHHHHHHHHHHHCSCHHHHHHHHHHHH
T ss_pred --------hhhHHHHHHHHHHhCCcHHHHHHHHHHHH
Confidence 1123333 335567788899988888875
No 133
>3oc3_A Helicase MOT1, MOT1; regulation of transcription, hydrolase-transc complex; HET: MES; 3.10A {Encephalitozoon cuniculi}
Probab=96.80 E-value=0.0085 Score=61.34 Aligned_cols=238 Identities=15% Similarity=0.119 Sum_probs=140.1
Q ss_pred CcHHHHHhhcCCCHHHHHHHHHHHHHhhccChhhHHHHHhc--CCHHHHHHHHc-C------CC---HHHHHHHHHHHHH
Q 005044 208 GIPPLVELLEFTDTKVQRAAAGALRTLAFKNDENKNQIVEC--NALPTLILMLR-S------ED---SAIHYEAVGVIGN 275 (717)
Q Consensus 208 ~i~~L~~ll~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~--g~i~~L~~ll~-~------~~---~~v~~~a~~~L~~ 275 (717)
....|+.-|-++.+++|-.|+.+|+.+.............. .+.-.++-.+. + +| ..||+.|+.+|+.
T Consensus 175 fcE~L~~DLFdp~WEiRHGAALGLREILR~hG~GAGR~~~~N~DLAvRLLCVLALDRFGDYVSDqVVAPVRETaAQtLGa 254 (800)
T 3oc3_A 175 FFEQISDNLLSYEWYKRHGAFLAFAAMFSEIDNGGDIQIRVDSKLFSKIYEILVTDKFNDFVDDRTVAPVRDAAAYLLSR 254 (800)
T ss_dssp TTHHHHHHTTCSSHHHHHHHHHHHHHHHHHCC----CCCCCCTTHHHHHHHHHHHBCCBBCSSSSCBCHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCcchhhhhHHHHHHHHHHHHhccCCceeccccHHHHHHHHHHHHhccccccccCeeeeehHHHHHHHHHH
Confidence 45667777778999999999999999875322100000000 11222222221 1 11 3788888888888
Q ss_pred hhcCChHHHHHHHHcCChHHHHHhhccCChHHHHHHHHHHHHHhcCChhhHHHHHhcCChHHHHHHhcCCCHHHHHHHHH
Q 005044 276 LVHSSPNIKKEVLAAGALQPVIGLLSSCCSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQSPDVQLREMSAF 355 (717)
Q Consensus 276 l~~~~~~~~~~~~~~g~l~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~l~~~~~l~~L~~~l~~~~~~v~~~a~~ 355 (717)
+ ..-+.. ..++..++..+....|+++..+...|..+. +.... -.++++.++..|++.+.+|+..|+.
T Consensus 255 L-~hLp~e------~~IL~qLV~~l~~~~WEVRHGGLLGLKYL~----DLL~~--Ld~Vv~aVL~GL~D~DDDVRAVAAe 321 (800)
T 3oc3_A 255 I-YPLIGP------NDIIEQLVGFLDSGDWQVQFSGLIALGYLK----EFVED--KDGLCRKLVSLLSSPDEDIKLLSAE 321 (800)
T ss_dssp H-TTTSCS------CCHHHHHTTGGGCSCHHHHHHHHHHHHHTG----GGCCC--HHHHHHHHHHHTTCSSHHHHHHHHH
T ss_pred H-HhCChh------HHHHHHHHhhcCCCCeeehhhhHHHHHHHH----HHHHH--HHHHHHHHHhhcCCcccHHHHHHHH
Confidence 8 443321 233444444456777888888888888871 11111 2456777888888888889988888
Q ss_pred HHHHhhcCCCCchhhHhcCChHHHH----HhhcC-CCh-hHHHHHHHHHHhccCCCcchHHHHHhcCccccccchhHHhh
Q 005044 356 ALGRLAQDMHNQAGIAHNGGLVPLL----KLLDS-KNG-SLQHNAAFALYGLADNEDNVADFIRVGGVQKLQDGEFIVQA 429 (717)
Q Consensus 356 ~L~~l~~~~~~~~~l~~~~~l~~L~----~ll~~-~~~-~v~~~a~~~L~~l~~~~~~~~~l~~~~~i~~L~~~~~~~~~ 429 (717)
+|.-++ .+ ..++.++ +.|.+ ++- .-.......|..|+..+.. ..
T Consensus 322 tLiPIA-~p---------~~l~~LL~iLWd~L~~LDDLSASTgSVMdLLAkL~s~p~~------a~-------------- 371 (800)
T 3oc3_A 322 LLCHFP-IT---------DSLDLVLEKCWKNIESEELISVSKTSNLSLLTKIYRENPE------LS-------------- 371 (800)
T ss_dssp HHTTSC-CS---------STHHHHHHHHHHHHHTCCSCCTTHHHHHHHHHHHHHHCTT------CC--------------
T ss_pred Hhhhhc-ch---------hhHHHHHHHHHHHhhhhcccchhhHHHHHHHHHHHcCCcc------cc--------------
Confidence 888887 11 1233332 22222 111 1112233344444332210 00
Q ss_pred hHHHHHHHHHHHHHHhhhchHHHHHHHHhhcchhHHHHHHHHHHhccCCCCCceeeecCCCHHHHH-HHhcCCCchhhhh
Q 005044 430 TKDCVAKTLKRLEEKIHGRVLNHLLYLMRVAEKGVQRRVALALAHLCSPDDQRTIFIDGGGLELLL-GLLGSTNPKQQLD 508 (717)
Q Consensus 430 ~~~~~~~~~~~l~~~~~~~~~~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~~~~~~l~~L~-~ll~~~~~~v~~~ 508 (717)
.....+|+|.++++++-+.||..++++|..+. ....++.+. +++-..+++++..
T Consensus 372 ---------------~dp~LVPRL~PFLRHtITSVR~AVL~TL~tfL----------~~~~LRLIFQNILLE~neeIl~l 426 (800)
T 3oc3_A 372 ---------------IPPERLKDIFPCFTSPVPEVRTSILNMVKNLS----------EESIDFLVAEVVLIEEKDEIREM 426 (800)
T ss_dssp ---------------CCSGGGGGTGGGGTCSSHHHHHHHHHHTTTCC----------CHHHHHHHHHHHHHCSCHHHHHH
T ss_pred ---------------cChHHHHHHHhhhcCCcHHHHHHHHHHHHHHH----------hhhHHHHHHHHHHhCCcHHHHHH
Confidence 01247899999999999999999999998886 223455444 5566788888877
Q ss_pred hHHHH
Q 005044 509 GAVAL 513 (717)
Q Consensus 509 a~~~l 513 (717)
+..+-
T Consensus 427 S~~VW 431 (800)
T 3oc3_A 427 AIKLL 431 (800)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 66655
No 134
>2of3_A ZYG-9; multifunctional macromolecule, kinetochore, microtubule, XMAP215, STU2, DIS1, microtubule associated protein, structural protein; 1.90A {Caenorhabditis elegans}
Probab=96.70 E-value=0.015 Score=54.91 Aligned_cols=178 Identities=10% Similarity=-0.005 Sum_probs=119.3
Q ss_pred HHHHHhhccCChHHHHHHHHHHHHHhcCChhhHHHHHhcCChHHHHHHh----cCCCHHHHHHHHHHHHHhhc---CCCC
Q 005044 294 QPVIGLLSSCCSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEML----QSPDVQLREMSAFALGRLAQ---DMHN 366 (717)
Q Consensus 294 ~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~l~~~~~l~~L~~~l----~~~~~~v~~~a~~~L~~l~~---~~~~ 366 (717)
+.+...+.+.+..-+..++..|......+++. +. ..+..++.++ .+.++.+...++.+|..+.. ....
T Consensus 49 ~~~~~~lfs~d~k~~~~ale~L~~~l~~~~~~---~~--~~lDll~kw~~lr~~d~N~~v~~~~L~~L~~l~~~l~~~~y 123 (266)
T 2of3_A 49 VSLMSQLFHKDFKQHLAALDSLVRLADTSPRS---LL--SNSDLLLKWCTLRFFETNPAALIKVLELCKVIVELIRDTET 123 (266)
T ss_dssp HHHHHHHTCSCHHHHHHHHHHHHHHHHHCHHH---HH--HTHHHHHHHHHHHTTSCCHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHhcCCCHHHHHHHHHHHHHHhhhChHH---HH--HHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHhccc
Confidence 34555666667777777777777655433322 21 1233445544 47899998888888888652 1111
Q ss_pred chhhHh-cCChHHHHHhhcCCChhHHHHHHHHHHhccCCCcchHHHHHhcCccccccchhHHhhhHHHHHHHHHHHHHHh
Q 005044 367 QAGIAH-NGGLVPLLKLLDSKNGSLQHNAAFALYGLADNEDNVADFIRVGGVQKLQDGEFIVQATKDCVAKTLKRLEEKI 445 (717)
Q Consensus 367 ~~~l~~-~~~l~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~l~~~~~i~~L~~~~~~~~~~~~~~~~~~~~l~~~~ 445 (717)
+-.-.+ .-.+|.|+.-+.+....+|..+-.++..+.....
T Consensus 124 ~~~~~ea~~~lP~LveKlGd~k~~vR~~~r~il~~l~~v~~--------------------------------------- 164 (266)
T 2of3_A 124 PMSQEEVSAFVPYLLLKTGEAKDNMRTSVRDIVNVLSDVVG--------------------------------------- 164 (266)
T ss_dssp CCCHHHHHHHHHHHHHGGGCSSHHHHHHHHHHHHHHHHHHC---------------------------------------
T ss_pred cchHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHHCC---------------------------------------
Confidence 111111 3457778888888888999988888876653110
Q ss_pred hhchHHHHHHHHhhcchhHHHHHHHHHHhccCCCCCceeeecCCCH---HHHHHHhcCCCchhhhhhHHHHHHhhhc
Q 005044 446 HGRVLNHLLYLMRVAEKGVQRRVALALAHLCSPDDQRTIFIDGGGL---ELLLGLLGSTNPKQQLDGAVALFKLANK 519 (717)
Q Consensus 446 ~~~~~~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~~~~~~l---~~L~~ll~~~~~~v~~~a~~~l~~L~~~ 519 (717)
.+.+++.+++-+.+.+..+|..++..+..+....... ...++ +.+..++.+.|..||..|..++..+..+
T Consensus 165 ~~~v~~~l~~g~ksKN~R~R~e~l~~l~~li~~~G~~----~~~~l~~~~~ia~ll~D~d~~VR~aAl~~lve~y~~ 237 (266)
T 2of3_A 165 PLKMTPMLLDALKSKNARQRSECLLVIEYYITNAGIS----PLKSLSVEKTVAPFVGDKDVNVRNAAINVLVACFKF 237 (266)
T ss_dssp HHHHHHHHHHGGGCSCHHHHHHHHHHHHHHHHHHCSG----GGGGGCHHHHHGGGGGCSSHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccCCHHHHHHHHHHHHHHHHhcCCC----ccccccchHHHHHHHcCCCHHHHHHHHHHHHHHHHH
Confidence 1125666777788889999999999998885432211 23578 9999999999999999999999887765
No 135
>3m1i_C Exportin-1; heat repeat, GTP-binding, nucleotide-binding, NUCL protein transport, transport, cytoplasm, GTPase activation; HET: GTP; 2.00A {Saccharomyces cerevisiae} PDB: 2l1l_B
Probab=96.68 E-value=0.12 Score=60.62 Aligned_cols=335 Identities=13% Similarity=0.076 Sum_probs=169.2
Q ss_pred HHHhHHHHHHHHhcCChhhHHHHHhCCChHHHHH-HHhccccCCCccchhHHHHHHHHHHHHHhhcC--ch---hhhHHH
Q 005044 131 EVEKGSAFALGLLAVKPEHQQLIVDNGALSHLVN-LLKRHMDSNCSRAVNSVIRRAADAITNLAHEN--SS---IKTRVR 204 (717)
Q Consensus 131 ~v~~~a~~~L~~l~~~~~~~~~~~~~~~i~~L~~-lL~~~~~~~~~~~~~~~~~~a~~~L~~l~~~~--~~---~~~~~~ 204 (717)
.++..++.++.+...--.. ..+.....++.+.+ ++. ++ +++..|+.+|..+.... +. ....+.
T Consensus 210 ~~~~~aL~~l~~~l~wi~~-~~~~~~~ll~~l~~~~l~--~~--------~~~~~a~~~L~~i~~~~~~~~~~~~~~~~~ 278 (1049)
T 3m1i_C 210 SLIVATLESLLRYLHWIPY-RYIYETNILELLSTKFMT--SP--------DTRAITLKCLTEVSNLKIPQDNDLIKRQTV 278 (1049)
T ss_dssp HHHHHHHHHHHHHTTTSCT-HHHHSSSHHHHHHTHHHH--SH--------HHHHHHHHHHHHHHHCCCCTTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhCCH-HHHhhhhHHHHHHHHhCC--CH--------hHHHHHHHHHHHHHhCCCCcchhhHHHHHH
Confidence 7899999999887621111 22444566666663 332 22 78899999999988652 11 011111
Q ss_pred h--cCCcHHHHH-h-------------hcCCCHHHHHHHHHHHHHhhcc-------ChhhHHHHHhcCCHHHHHHHHcCC
Q 005044 205 M--EGGIPPLVE-L-------------LEFTDTKVQRAAAGALRTLAFK-------NDENKNQIVECNALPTLILMLRSE 261 (717)
Q Consensus 205 ~--~~~i~~L~~-l-------------l~~~~~~v~~~a~~~L~~L~~~-------~~~~~~~~~~~g~i~~L~~ll~~~ 261 (717)
. .+.+..+.. + ..+.+.+.....+..+..+... .+.....+ ..+++.++.....+
T Consensus 279 ~l~~~~l~~l~~si~p~~~~l~~~~~~~~~~d~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l--~~~l~~ll~~~~~~ 356 (1049)
T 3m1i_C 279 LFFQNTLQQIATSVMPVTADLKATYANANGNDQSFLQDLAMFLTTYLARNRALLESDESLRELL--LNAHQYLIQLSKIE 356 (1049)
T ss_dssp HHHHHHHHHHHHHTCCTTSCHHHHHHHTCTTHHHHHHHHHHHHHHHHHHHHHHHHSCGGGHHHH--HHHHHHHHHHHTSS
T ss_pred HHHHHHHHHHHHhhCCCcccHHHHhccCCcchHHHHHHHHHHHHHHHHHHHHHHcCChhhHHHH--HHHHHHHHHHHcCC
Confidence 0 111221111 1 1122344545555555444321 11111111 13567777777778
Q ss_pred CHHHHHHHHHHHHHhhc----CC--hHHHHHHHHcCChHHHHHhhccC-------------------Ch---HHHHHHHH
Q 005044 262 DSAIHYEAVGVIGNLVH----SS--PNIKKEVLAAGALQPVIGLLSSC-------------------CS---ESQREAAL 313 (717)
Q Consensus 262 ~~~v~~~a~~~L~~l~~----~~--~~~~~~~~~~g~l~~L~~ll~~~-------------------~~---~~~~~a~~ 313 (717)
+.++...++..+..++. .. ......+ -..+++.++..+..+ +. ..++.+..
T Consensus 357 d~~v~~~~lefw~~l~~~l~~~~~~~~~~~~~-l~~Lv~~ll~~m~~~ed~~~~~dd~~e~~r~~~~d~d~~~~~~~~~~ 435 (1049)
T 3m1i_C 357 ERELFKTTLDYWHNLVADLFYEPLKKHIYEEI-CSQLRLVIIENMVRPEEVLVVENDEGEIVREFVKESDTIQLYKSERE 435 (1049)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHSTTCGGGGHHH-HHHHHHHHHHTCCCCTTCCEEECTTSCEEECSSCCHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHhchhHHHHHHHH-HHHHHHHHHHhcCCCcceeeeeCCCCcchHhhhccchHHHHHHHHHH
Confidence 88999999988888765 11 1110111 112334444443211 00 22445556
Q ss_pred HHHHHhcCChhhHHHHHhcCChHHHHHHhc--CCCHHHHHHHHHHHHHhhcCCCCch-hhHhcCChHHHHHhhcC-----
Q 005044 314 LLGQFAATDSDCKVHIVQRGAVRPLIEMLQ--SPDVQLREMSAFALGRLAQDMHNQA-GIAHNGGLVPLLKLLDS----- 385 (717)
Q Consensus 314 ~L~~l~~~~~~~~~~l~~~~~l~~L~~~l~--~~~~~v~~~a~~~L~~l~~~~~~~~-~l~~~~~l~~L~~ll~~----- 385 (717)
+|..++...+.....+ +.+.+-+.+. ..+...++.++++++.++..-.... .-.-...++.+..+...
T Consensus 436 ~L~~l~~~~~~~~l~~----v~~~l~~~l~~~~~~W~~~eaal~algsia~~~~~~~e~~~l~~v~~~l~~l~~~~~~~~ 511 (1049)
T 3m1i_C 436 VLVYLTHLNVIDTEEI----MISKLARQIDGSEWSWHNINTLSWAIGSISGTMSEDTEKRFVVTVIKDLLDLTVKKRGKD 511 (1049)
T ss_dssp HHHHHHHHCHHHHHHH----HHHHHHHHHTSSSCCHHHHHHHHHHHHHTTTSSCHHHHHHHHHHHHHHHHHHTTSSCSHH
T ss_pred HHHHHHccCHHHHHHH----HHHHHHHHhCCCCCCHHHHHHHHHHHHHHhcccCchhhHHHHHHHHHHHHHHHhhhcccc
Confidence 6666653322211111 2344444454 3578899999999999885422110 01111122233332221
Q ss_pred CChhHHHHHHHHHHhccCCCcchHHHHHhcCccccccchhHHhhhHHHHHHHHHHHHHHhhhchHHHHHHHHhhcchhHH
Q 005044 386 KNGSLQHNAAFALYGLADNEDNVADFIRVGGVQKLQDGEFIVQATKDCVAKTLKRLEEKIHGRVLNHLLYLMRVAEKGVQ 465 (717)
Q Consensus 386 ~~~~v~~~a~~~L~~l~~~~~~~~~l~~~~~i~~L~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~L~~ll~~~~~~v~ 465 (717)
.++.++..++++++.++..-..... .-..+++.++..+.++++.|+
T Consensus 512 ~~~~v~~~~~~~lgry~~~~~~~~~----------------------------------~l~~vl~~ll~~l~~~~~~V~ 557 (1049)
T 3m1i_C 512 NKAVVASDIMYVVGQYPRFLKAHWN----------------------------------FLRTVILKLFEFMHETHEGVQ 557 (1049)
T ss_dssp HHHHHHHHHHHHHHHCHHHHHHCHH----------------------------------HHHHHHHHHHHHTTSSCHHHH
T ss_pred chHHHHHHHHHHHHHHHHHHHhHHH----------------------------------HHHHHHHHHHHHhcCCCHHHH
Confidence 2334444678888877631110000 112267778888888899999
Q ss_pred HHHHHHHHhccCCCCCceeee----------cCCCHHHHHHHhcCCCchhhhhhHHHHHHhhhc
Q 005044 466 RRVALALAHLCSPDDQRTIFI----------DGGGLELLLGLLGSTNPKQQLDGAVALFKLANK 519 (717)
Q Consensus 466 ~~a~~aL~~l~~~~~~~~~~~----------~~~~l~~L~~ll~~~~~~v~~~a~~~l~~L~~~ 519 (717)
..|+.+|.+++..-. ..+. -...+..|..++..-+.+.......++..++..
T Consensus 558 ~~A~~al~~l~~~~~--~~l~~~~~~~~~p~~~~il~~l~~~~~~~~~~~~~~~~eai~~ii~~ 619 (1049)
T 3m1i_C 558 DMACDTFIKIVQKCK--YHFVIQQPRESEPFIQTIIRDIQKTTADLQPQQVHTFYKACGIIISE 619 (1049)
T ss_dssp HHHHHHHHHHHHHHT--HHHHSCCTTCSSCHHHHHHHTHHHHHTTSCHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHH--HHhhcccCCCCCcHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHc
Confidence 999999999986422 1111 112333344455544444445555666666543
No 136
>1upk_A MO25 protein; transferase, armadillo; HET: MSE; 1.85A {Homo sapiens} SCOP: a.118.1.15 PDB: 1upl_A 2wtk_A* 3gni_A*
Probab=96.64 E-value=0.15 Score=49.09 Aligned_cols=205 Identities=14% Similarity=0.112 Sum_probs=145.8
Q ss_pred HHhCCChHHHHHHHhccccCCCccchhHHHHHHHHHHHHHhhcCchhhhHHHh--cCCcHHHHHhhcC-CCHHHHHHHHH
Q 005044 153 IVDNGALSHLVNLLKRHMDSNCSRAVNSVIRRAADAITNLAHENSSIKTRVRM--EGGIPPLVELLEF-TDTKVQRAAAG 229 (717)
Q Consensus 153 ~~~~~~i~~L~~lL~~~~~~~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~--~~~i~~L~~ll~~-~~~~v~~~a~~ 229 (717)
+...+.+..|+..|..-+- +.+..+..++.++.......+...++ ..-...+..++.. .++++-..+-.
T Consensus 74 i~~~dll~~Li~~l~~L~f--------E~RKd~~~if~~llr~~~~~~~p~v~Yl~~~peil~~L~~gYe~~diAl~~G~ 145 (341)
T 1upk_A 74 LYNSGLLSTLVADLQLIDF--------EGKKDVAQIFNNILRRQIGTRTPTVEYICTQQNILFMLLKGYESPEIALNCGI 145 (341)
T ss_dssp HHHHSHHHHHHHTGGGSCH--------HHHHHHHHHHHHHHTCCBTTBCHHHHHHHTCTHHHHHHHHGGGSTTTHHHHHH
T ss_pred HHHhCHHHHHHHhcccCCc--------hhhccHHHHHHHHHhcccCCCCchhHHHHcCHHHHHHHHHhhccchhHhHHHH
Confidence 3445667777777766543 88888998888888755433222111 0112222222221 34555566666
Q ss_pred HHHHhhccChhhHHHHHhcCCHHHHHHHHcCCCHHHHHHHHHHHHHhhcCChHHHHHHHHcC---ChHHHHHhhccCChH
Q 005044 230 ALRTLAFKNDENKNQIVECNALPTLILMLRSEDSAIHYEAVGVIGNLVHSSPNIKKEVLAAG---ALQPVIGLLSSCCSE 306 (717)
Q Consensus 230 ~L~~L~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g---~l~~L~~ll~~~~~~ 306 (717)
.|+.... .+...+.+...+.+..+.+.+..++-++...|..++..+...+.......+... ....+.+++.+++.-
T Consensus 146 mLRecir-~e~la~~iL~~~~f~~fF~yv~~~~FdiasDAf~TfkelLt~Hk~lvaefL~~nyd~Ff~~y~~Ll~S~NYV 224 (341)
T 1upk_A 146 MLRECIR-HEPLAKIILWSEQFYDFFRYVEMSTFDIASDAFATFKDLLTRHKLLSAEFLEQHYDRFFSEYEKLLHSENYV 224 (341)
T ss_dssp HHHHHHT-SHHHHHHHHHSGGGGHHHHHTTCSSHHHHHHHHHHHHHHHHSSHHHHHHHHHHTHHHHHHHHHHHTTCSSHH
T ss_pred HHHHHHH-hHHHHHHHhccHHHHHHHHHhcCCCchHHHHHHHHHHHHHhccHHHHHHHHHHhHHHHHHHHHHHhcCCcch
Confidence 7777775 666677777777888999999999999999999999999877776666666543 577788899999999
Q ss_pred HHHHHHHHHHHHhcCChh--h-HHHHHhcCChHHHHHHhcCCCHHHHHHHHHHHHHhhcCCCC
Q 005044 307 SQREAALLLGQFAATDSD--C-KVHIVQRGAVRPLIEMLQSPDVQLREMSAFALGRLAQDMHN 366 (717)
Q Consensus 307 ~~~~a~~~L~~l~~~~~~--~-~~~l~~~~~l~~L~~~l~~~~~~v~~~a~~~L~~l~~~~~~ 366 (717)
++++++..|+.+-..... . ...+.+..-+..++.+|++....++..|..++.-+..++..
T Consensus 225 TkRQSlKLLgelLldr~N~~vM~~Yis~~~nLkl~M~LL~d~sk~Iq~EAFhVFKvFVANP~K 287 (341)
T 1upk_A 225 TKRQSLKLLGELLLDRHNFTIMTKYISKPENLKLMMNLLRDKSRNIQFEAFHVFKVFVANPNK 287 (341)
T ss_dssp HHHHHHHHHHHHHHSGGGHHHHHHHTTCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHHCSSC
T ss_pred hHHHHHHHHHHHHhCchHHHHHHHHhCCHHHHHHHHHHhcCchhchhhhhhhheeeeeeCCCC
Confidence 999999999999744221 1 23344566788999999999999999999999888876543
No 137
>3ibv_A Exportin-T; karyopherin, heat repeat, cytoplasm, nucleus, RNA- binding, transport, tRNA processing, tRNA-binding, RNA binding protein; 3.10A {Schizosaccharomyces pombe} PDB: 3icq_T*
Probab=96.50 E-value=0.05 Score=62.71 Aligned_cols=302 Identities=13% Similarity=0.063 Sum_probs=158.6
Q ss_pred HHHhHHHHHHHHhcCChhhHHHHHhCCChHHHHHHHhccccCCCccchhHHHHHHHHHHHHHhhcCchh--hhHHHhcCC
Q 005044 131 EVEKGSAFALGLLAVKPEHQQLIVDNGALSHLVNLLKRHMDSNCSRAVNSVIRRAADAITNLAHENSSI--KTRVRMEGG 208 (717)
Q Consensus 131 ~v~~~a~~~L~~l~~~~~~~~~~~~~~~i~~L~~lL~~~~~~~~~~~~~~~~~~a~~~L~~l~~~~~~~--~~~~~~~~~ 208 (717)
.++..++.+|+....--. ...+...+.++.+..+|... +++..|+.+|..+....... +..++..=.
T Consensus 208 ~l~~~~L~~l~s~i~wi~-~~~i~~~~ll~~l~~~L~~~----------~~r~~A~ecL~ei~~k~~~~~~k~~li~~l~ 276 (980)
T 3ibv_A 208 GTVGLCLQVYAQWVSWIN-INLIVNEPCMNLLYSFLQIE----------ELRCAACETMTEIVNKKMKPLEKLNLLNILN 276 (980)
T ss_dssp HHHHHHHHHHHHHTTTSC-HHHHHCHHHHHHHHHHTTSH----------HHHHHHHHHHHHHHHSCCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhcC-HHhhhcchHHHHHHHHcCCh----------HHHHHHHHHHHHHHHcCCChhhHHHHHHHHh
Confidence 888999999999883211 13345556777788777652 89999999999998754432 222221101
Q ss_pred cHHHHHhhc--CCCHHHHHHHHHHHHHhh------ccCh-----hhHHHH--HhcCCHHHHHHHHcCCCHHHHHHHHHHH
Q 005044 209 IPPLVELLE--FTDTKVQRAAAGALRTLA------FKND-----ENKNQI--VECNALPTLILMLRSEDSAIHYEAVGVI 273 (717)
Q Consensus 209 i~~L~~ll~--~~~~~v~~~a~~~L~~L~------~~~~-----~~~~~~--~~~g~i~~L~~ll~~~~~~v~~~a~~~L 273 (717)
+...+..+. ..|.+..+..++.+..++ ...+ +..... .-.++++.++.++.+++.++...++..+
T Consensus 277 L~~~~~~l~~~~~D~d~~~~la~L~~~~ge~l~~~~~~~~~~~~~~~~~~~~~l~~ll~~lL~~~~~~~deVs~~t~~Fw 356 (980)
T 3ibv_A 277 LNLFFSKSQEQSTDPNFDEHVAKLINAQGVELVAIKSDPSELSPELKENCSFQLYNLFPYLIRYLSDDYDETSTAVFPFL 356 (980)
T ss_dssp HHHHHCC-----CCHHHHHHHHHHHHHHHHHHHHHHTSCC--CHHHHHHHHHHHHHTHHHHHHHHTCSSHHHHHTTHHHH
T ss_pred HHHHHHHHhcccccHHHHHHHHHHHHHHHHHHHHHccCccccchhhhhhHHHHHHHHHHHHHHHhCCCchhHHHHHHHHH
Confidence 111222222 456666655544443332 1111 111111 1125789999999999999988887777
Q ss_pred HHhhcCCh---------HHHHHHHHcCChHHHHHhhccC------C----------hHHHHHHHHHHHHHhcCChhhHHH
Q 005044 274 GNLVHSSP---------NIKKEVLAAGALQPVIGLLSSC------C----------SESQREAALLLGQFAATDSDCKVH 328 (717)
Q Consensus 274 ~~l~~~~~---------~~~~~~~~~g~l~~L~~ll~~~------~----------~~~~~~a~~~L~~l~~~~~~~~~~ 328 (717)
..+..... .....+ -..+++.++.-+..+ + .+.|+.....+..++.-+++....
T Consensus 357 ~~~l~~~~~~~~~~~~~~~~~~~-l~~Ll~~li~k~~yp~d~~~~~~~d~ed~~~F~e~Rk~l~~l~d~~~~l~~~~~l~ 435 (980)
T 3ibv_A 357 SDLLVSLRKESSSKELSASLKEF-LKSLLEAIIKKMKYDESQEWDDDPDSEEEAEFQEMRKKLKIFQDTINSIDSSLFSS 435 (980)
T ss_dssp HHHHHHHHHHTTSCCCCHHHHHH-HHHHHHHHHHTTSCCTTCCCCCCSSSSTHHHHHHHHHHHHHHHHHHHHHCHHHHHH
T ss_pred HHHHHHHHhccccccccHHHHHH-HHHHHHHHHHHccCCCccccccccchhHHHHHHHHHHHHHHHHHHHHhcChHHHHH
Confidence 76643210 000010 011233333333221 1 034555443333443323332221
Q ss_pred HHhcCChHHHHHHhc---CCCHHHHHHHHHHHHHhhcCCCCc-hhh-HhcC----ChHHHHHhhc-----CCChhHHHHH
Q 005044 329 IVQRGAVRPLIEMLQ---SPDVQLREMSAFALGRLAQDMHNQ-AGI-AHNG----GLVPLLKLLD-----SKNGSLQHNA 394 (717)
Q Consensus 329 l~~~~~l~~L~~~l~---~~~~~v~~~a~~~L~~l~~~~~~~-~~l-~~~~----~l~~L~~ll~-----~~~~~v~~~a 394 (717)
..-.-+.+.+-+.+. +.+...++.++.+|+.++.+-.+. ... -... .++.+..++. ..++.|+..+
T Consensus 436 ~~~~~i~~~l~~~l~~~~~~~W~~~EaaL~~l~~iaE~i~~~~~~~~~~~~~lp~l~~ll~~ll~s~i~~~~hp~V~~~~ 515 (980)
T 3ibv_A 436 YMYSAITSSLSTAATLSPENSWQLIEFALYETYIFGEGLRGPDAFFNEVDKSPTVLSQILALVTTSQVCRHPHPLVQLLY 515 (980)
T ss_dssp HHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHTTTTCCSGGGTBCSSSCCBCHHHHHHHHHHHSSTTTCCCHHHHHHH
T ss_pred HHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHhhccccccccCcccchhHHHHHHHHHHHhCCCCCCCCHHHHHHH
Confidence 110112223333342 235778899999999998754321 111 0111 2333445544 6788999999
Q ss_pred HHHHHhccCCCcchHHHHHhcCccccccchhHHhhhHHHHHHHHHHHHHHhhhchHHHHHH--HHhhcchhHHHHHHHHH
Q 005044 395 AFALYGLADNEDNVADFIRVGGVQKLQDGEFIVQATKDCVAKTLKRLEEKIHGRVLNHLLY--LMRVAEKGVQRRVALAL 472 (717)
Q Consensus 395 ~~~L~~l~~~~~~~~~l~~~~~i~~L~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~L~~--ll~~~~~~v~~~a~~aL 472 (717)
++++...+..-...+ ..++ .+++.++. .+.++++.++..|+.++
T Consensus 516 ~~~l~rys~~~~~~~-----~~l~-----------------------------~~L~~ll~~~gl~~~~~~V~~~a~~af 561 (980)
T 3ibv_A 516 MEILVRYASFFDYES-----AAIP-----------------------------ALIEYFVGPRGIHNTNERVRPRAWYLF 561 (980)
T ss_dssp HHHHHHTGGGGGTCC-----TTHH-----------------------------HHHHHHTSTTTTTCCCTTTHHHHHHHH
T ss_pred HHHHHHHHHHHhcCc-----hhHH-----------------------------HHHHHHhccccccCCChhHHHHHHHHH
Confidence 999998875322110 0000 12333333 34456778999999999
Q ss_pred HhccCC
Q 005044 473 AHLCSP 478 (717)
Q Consensus 473 ~~l~~~ 478 (717)
.+++..
T Consensus 562 ~~f~~~ 567 (980)
T 3ibv_A 562 YRFVKS 567 (980)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 999754
No 138
>3m1i_C Exportin-1; heat repeat, GTP-binding, nucleotide-binding, NUCL protein transport, transport, cytoplasm, GTPase activation; HET: GTP; 2.00A {Saccharomyces cerevisiae} PDB: 2l1l_B
Probab=96.40 E-value=0.34 Score=56.83 Aligned_cols=190 Identities=9% Similarity=0.100 Sum_probs=104.1
Q ss_pred CcHHHHHhhcCCCHHHHHHHHHHHHHhhc----cC--hhhHHHHHhcCCHHHHHHHHcCC-------------------C
Q 005044 208 GIPPLVELLEFTDTKVQRAAAGALRTLAF----KN--DENKNQIVECNALPTLILMLRSE-------------------D 262 (717)
Q Consensus 208 ~i~~L~~ll~~~~~~v~~~a~~~L~~L~~----~~--~~~~~~~~~~g~i~~L~~ll~~~-------------------~ 262 (717)
+++.++.....++.++...++..+..++. .. ......+.. .+++.++..+.-+ +
T Consensus 345 ~l~~ll~~~~~~d~~v~~~~lefw~~l~~~l~~~~~~~~~~~~~l~-~Lv~~ll~~m~~~ed~~~~~dd~~e~~r~~~~d 423 (1049)
T 3m1i_C 345 AHQYLIQLSKIEERELFKTTLDYWHNLVADLFYEPLKKHIYEEICS-QLRLVIIENMVRPEEVLVVENDEGEIVREFVKE 423 (1049)
T ss_dssp HHHHHHHHHTSSCHHHHHHHHHHHHHHHHHHHHSTTCGGGGHHHHH-HHHHHHHHTCCCCTTCCEEECTTSCEEECSSCC
T ss_pred HHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHHhchhHHHHHHHHHH-HHHHHHHHhcCCCcceeeeeCCCCcchHhhhcc
Confidence 45666666667788999999888888775 11 111111111 2344444443211 1
Q ss_pred H---HHHHHHHHHHHHhhcCChHHHHHHHHcCChHHHHHhhc--cCChHHHHHHHHHHHHHhcCChhhHHHHHhcCChHH
Q 005044 263 S---AIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLS--SCCSESQREAALLLGQFAATDSDCKVHIVQRGAVRP 337 (717)
Q Consensus 263 ~---~v~~~a~~~L~~l~~~~~~~~~~~~~~g~l~~L~~ll~--~~~~~~~~~a~~~L~~l~~~~~~~~~~l~~~~~l~~ 337 (717)
. ..+..+..+|..++.......- .-+.+.+.+.+. ..++..++.++++++.++.........-.-..+++.
T Consensus 424 ~d~~~~~~~~~~~L~~l~~~~~~~~l----~~v~~~l~~~l~~~~~~W~~~eaal~algsia~~~~~~~e~~~l~~v~~~ 499 (1049)
T 3m1i_C 424 SDTIQLYKSEREVLVYLTHLNVIDTE----EIMISKLARQIDGSEWSWHNINTLSWAIGSISGTMSEDTEKRFVVTVIKD 499 (1049)
T ss_dssp HHHHHHHHHHHHHHHHHHHHCHHHHH----HHHHHHHHHHHTSSSCCHHHHHHHHHHHHHTTTSSCHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHHHccCHHHHH----HHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHhcccCchhhHHHHHHHHHH
Confidence 1 2244455566666532221100 112334444444 357889999999999997543222111111224455
Q ss_pred HHHHhcC-----CCHHHHHHHHHHHHHhhcCCCCchhhHhcCChHHHHHhhcCCChhHHHHHHHHHHhccC
Q 005044 338 LIEMLQS-----PDVQLREMSAFALGRLAQDMHNQAGIAHNGGLVPLLKLLDSKNGSLQHNAAFALYGLAD 403 (717)
Q Consensus 338 L~~~l~~-----~~~~v~~~a~~~L~~l~~~~~~~~~l~~~~~l~~L~~ll~~~~~~v~~~a~~~L~~l~~ 403 (717)
+..+... +.+.++..++|+++.++..-...... -...++.+++.+++.++.|+..|+.++.+++.
T Consensus 500 l~~l~~~~~~~~~~~~v~~~~~~~lgry~~~~~~~~~~-l~~vl~~ll~~l~~~~~~V~~~A~~al~~l~~ 569 (1049)
T 3m1i_C 500 LLDLTVKKRGKDNKAVVASDIMYVVGQYPRFLKAHWNF-LRTVILKLFEFMHETHEGVQDMACDTFIKIVQ 569 (1049)
T ss_dssp HHHHTTSSCSHHHHHHHHHHHHHHHHHCHHHHHHCHHH-HHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHH
T ss_pred HHHHHhhhccccchHHHHHHHHHHHHHHHHHHHhHHHH-HHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHH
Confidence 5554332 23445556889998877421111111 12345567777888899999999999999986
No 139
>4ffb_C Protein STU2; tubulin fold, heat repeats, cytoskeleton, microtubule, tubul domain, hydrolase; HET: GTP; 2.88A {Saccharomyces cerevisiae}
Probab=96.36 E-value=0.076 Score=51.40 Aligned_cols=180 Identities=12% Similarity=0.069 Sum_probs=114.6
Q ss_pred hhHHHHHHHHHHHHHhhcCchhh--hH-HH-hcCCcHHHHHhhcCCCHHHHHHHHHHHHHhhccChh---hHH--HHHhc
Q 005044 178 VNSVIRRAADAITNLAHENSSIK--TR-VR-MEGGIPPLVELLEFTDTKVQRAAAGALRTLAFKNDE---NKN--QIVEC 248 (717)
Q Consensus 178 ~~~~~~~a~~~L~~l~~~~~~~~--~~-~~-~~~~i~~L~~ll~~~~~~v~~~a~~~L~~L~~~~~~---~~~--~~~~~ 248 (717)
.|..|..++..|..+....+... .. +. -....+.+...+.+.+..++..++.++..++..... ... ...-.
T Consensus 22 ~WK~R~eale~l~~~~~~~~~~~~~~~~~~~~~~~~~~lkk~l~DsN~~v~~~al~~l~~~~~~~~~~~~~~~~~~~~~~ 101 (278)
T 4ffb_C 22 LWKARLEAYKELNQLFRNSVGDISRDDNIQIYWRDPTLFAQYITDSNVVAQEQAIVALNSLIDAFASSSLKNAHNITLIS 101 (278)
T ss_dssp SHHHHHHHHHHHHHHHHTC----------CCTTSCTHHHHHHTTCSSHHHHHHHHHHHHHHHTTCC---CCHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHhhCcccccchhHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHhhhhhcccchhHHHHH
Confidence 36888888888888775433211 01 11 113456667788899999999999999988752111 111 11122
Q ss_pred CCHHHHHH-HHcCCCHHHHHHHHHHHHHhhcCChHHHHHHHHcCChHHHHHhhccCChHHHHHHHHHHHHHhcC--Chhh
Q 005044 249 NALPTLIL-MLRSEDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLSSCCSESQREAALLLGQFAAT--DSDC 325 (717)
Q Consensus 249 g~i~~L~~-ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~l~~L~~ll~~~~~~~~~~a~~~L~~l~~~--~~~~ 325 (717)
.+++.|+. .+.+..+.++..+..++..++...... .. ++..+...+.+.++.++..++..|..+... ....
T Consensus 102 ~~l~~lveK~l~~~k~~~~~~a~~~l~~~~~~~~~~-~~-----~~e~l~~~l~~Knpkv~~~~l~~l~~~l~~fg~~~~ 175 (278)
T 4ffb_C 102 TWTPLLVEKGLTSSRATTKTQSMSCILSLCGLDTSI-TQ-----SVELVIPFFEKKLPKLIAAAANCVYELMAAFGLTNV 175 (278)
T ss_dssp HHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHTSSSS-HH-----HHHHHGGGGGCSCHHHHHHHHHHHHHHHHHHTTTTC
T ss_pred HHHHHHHHHHhcCccHHHHHHHHHHHHHHHHhcCcH-HH-----HHHHHHHHHhccCHHHHHHHHHHHHHHHHHhCCCcC
Confidence 35666664 477888899999988887775432111 11 245666778888999999998888877532 1110
Q ss_pred HHHHHhcCChHHHHHHhcCCCHHHHHHHHHHHHHhhcC
Q 005044 326 KVHIVQRGAVRPLIEMLQSPDVQLREMSAFALGRLAQD 363 (717)
Q Consensus 326 ~~~l~~~~~l~~L~~~l~~~~~~v~~~a~~~L~~l~~~ 363 (717)
.....-..+++.+..++.+.++.||..|..++..+-+.
T Consensus 176 ~~k~~l~~i~~~l~k~l~d~~~~VR~aA~~l~~~ly~~ 213 (278)
T 4ffb_C 176 NVQTFLPELLKHVPQLAGHGDRNVRSQTMNLIVEIYKV 213 (278)
T ss_dssp CHHHHHHHHGGGHHHHHTCSSHHHHHHHHHHHHHHHTC
T ss_pred CchhHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHH
Confidence 00111123456678888999999999999999988763
No 140
>3l9t_A Putative uncharacterized protein SMU.31; hypothetical protein, unknown function; HET: EPE; 2.21A {Streptococcus mutans}
Probab=96.23 E-value=0.056 Score=49.35 Aligned_cols=143 Identities=15% Similarity=0.098 Sum_probs=99.8
Q ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHhhcCChHHHHHHHHcCChHHHHH-hhccCChHHHHHHHHHHHHHhc-CChhhHHH
Q 005044 251 LPTLILMLRSEDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIG-LLSSCCSESQREAALLLGQFAA-TDSDCKVH 328 (717)
Q Consensus 251 i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~l~~L~~-ll~~~~~~~~~~a~~~L~~l~~-~~~~~~~~ 328 (717)
++....+.+++..++|..|+..|+.+ .... ..++.+.. +..++++.|++.++.++..++. .+++
T Consensus 73 ~~la~~L~~~~~deVR~~Av~lLg~~-~~~~---------~~L~~ir~~va~D~~WrVre~lA~a~~~~~~~~~pe---- 138 (240)
T 3l9t_A 73 KKLAFLAYQSDVYQVRMYAVFLFGYL-SKDK---------EILIFMRDEVSKDNNWRVQEVLAKAFDEFCKKIEYK---- 138 (240)
T ss_dssp HHHHHHHHTCSSHHHHHHHHHHHHHT-TTSH---------HHHHHHHHTGGGCSCHHHHHHHHHHHHHHHHHHCTT----
T ss_pred HHHHHHHHhCcchHHHHHHHHHHHhc-cCcH---------HHHHHHHHHhCCCCCccHHHHHHHHHHHHHHhcCHH----
Confidence 45556677888889999999999887 3221 13666666 5566789999999999999874 3333
Q ss_pred HHhcCChHHHHHHhcCCCHHHHHHHHHHHHHhhcCCCCchhhHhcCChHHHHHhhcCCChhHHHHHHHHHHhccCC-Ccc
Q 005044 329 IVQRGAVRPLIEMLQSPDVQLREMSAFALGRLAQDMHNQAGIAHNGGLVPLLKLLDSKNGSLQHNAAFALYGLADN-EDN 407 (717)
Q Consensus 329 l~~~~~l~~L~~~l~~~~~~v~~~a~~~L~~l~~~~~~~~~l~~~~~l~~L~~ll~~~~~~v~~~a~~~L~~l~~~-~~~ 407 (717)
..++.+..+.++++..+|..|...+.-.+..+..+ .--.-+++.|..+..+++.-|+....+.|..++.. ++-
T Consensus 139 ----~~l~~~~~W~~d~n~~VRR~Ase~~rpW~~~~~~k--~dp~~ll~iL~~L~~D~s~yVrKSVan~LrD~SK~~Pd~ 212 (240)
T 3l9t_A 139 ----KALPIIDEWLKSSNLHTRRAATEGLRIWTNRPYFK--ENPNEAIRRIADLKEDVSEYVRKSVGNALRDISKKFPDL 212 (240)
T ss_dssp ----TTHHHHHHHHHCSSHHHHHHHHHHTCSGGGSTTTT--TCHHHHHHHHHTTTTCSCHHHHHHHHHHHHHHHTTCHHH
T ss_pred ----HHHHHHHHHhcCCCHHHHHHHHHhhHHHhccchhh--cCHHHHHHHHHHhcCChHHHHHHHHHHHHHHHhhhCHHH
Confidence 25788999999999999999988876555421111 00011344455566778889999999999999874 444
Q ss_pred hHHHHH
Q 005044 408 VADFIR 413 (717)
Q Consensus 408 ~~~l~~ 413 (717)
...+++
T Consensus 213 V~~~~~ 218 (240)
T 3l9t_A 213 VKIELK 218 (240)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 444444
No 141
>4hat_C Exportin-1; heat repeat, nuclear export, RAN-ranbp1, LMB, leptomycin B, protein transport-antibiotic complex; HET: GNP LMB; 1.78A {Saccharomyces cerevisiae} PDB: 4hau_C* 4hav_C* 4hb2_C* 4hax_C* 4haw_C* 4hay_C* 4hb3_C* 4haz_C* 4hb4_C* 3m1i_C* 4hb0_C* 4gmx_C* 4gpt_C* 3vyc_A 2l1l_B
Probab=96.12 E-value=0.04 Score=63.63 Aligned_cols=140 Identities=11% Similarity=0.029 Sum_probs=87.2
Q ss_pred hhHHHHHHHHHHHHHhhcCchhhhHHHhcCCcHHHHHhhcC-----CCHHHHHHHHHHHHHhhccChhhHHHHHhcCCHH
Q 005044 178 VNSVIRRAADAITNLAHENSSIKTRVRMEGGIPPLVELLEF-----TDTKVQRAAAGALRTLAFKNDENKNQIVECNALP 252 (717)
Q Consensus 178 ~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~-----~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~g~i~ 252 (717)
.|..++.++++++.++..-.+....-.-..+++.|+.++.+ +...++..++++++..+.--..+. .+.. .++.
T Consensus 466 ~W~~~EA~~~a~gaIa~~~~~~~e~~~l~~vi~~Ll~l~~~~~~~d~k~~v~~t~~~~lGry~~wl~~~~-~~L~-~vl~ 543 (1023)
T 4hat_C 466 SWHNINTLSWAIGSISGTMSEDTEKRFVVTVIKDLLDLCVKKRGKDNKAVVASDIMYVVGQYPRFLKAHW-NFLR-TVIL 543 (1023)
T ss_dssp CHHHHHHHHHHHHHTTTSSCHHHHHHHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHTCHHHHHHCH-HHHH-HHHH
T ss_pred CHHHHHHHHHHHHHHHcCCCchhHHHHHHHHHHHHHHhhhccccCcchHHHHHHHHHHHHHHHHHHhccH-HHHH-HHHH
Confidence 47999999999999997544332222223466777777753 234456678899887764211111 1221 2456
Q ss_pred HHHHHHcCCCHHHHHHHHHHHHHhhcCChHHHHHHHH------cCChHHHH----HhhccCChHHHHHHHHHHHHHhcCC
Q 005044 253 TLILMLRSEDSAIHYEAVGVIGNLVHSSPNIKKEVLA------AGALQPVI----GLLSSCCSESQREAALLLGQFAATD 322 (717)
Q Consensus 253 ~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~------~g~l~~L~----~ll~~~~~~~~~~a~~~L~~l~~~~ 322 (717)
.|+..+.++++.++..|++++.+++. .++..+.. ...++.++ ..+..-+......+..+++.+....
T Consensus 544 ~L~~~l~~~~~~v~~~A~~al~~l~~---~c~~~l~~~~~~e~~p~~~~il~~l~~~~~~l~~~~~~~lyeai~~vi~~~ 620 (1023)
T 4hat_C 544 KLFEFMHETHEGVQDMACDTFIKIVQ---KCKYHFVIQQPRESEPFIQTIIRDIQKTTADLQPQQVHTFYKACGIIISEE 620 (1023)
T ss_dssp HHHHHTTCSCHHHHHHHHHHHHHHHH---HHTHHHHSCCTTCSSCHHHHHHHTHHHHHTTSCHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHhhcCCHHHHHHHHHHHHHHHH---HHHHHhhccCCCCCchhHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhC
Confidence 67777777889999999999999984 34444432 11233333 3334445666677777888877543
No 142
>2fv2_A RCD1 required for cell differentiation1 homolog; armadillo-repeat, transcription; 2.20A {Homo sapiens}
Probab=95.75 E-value=0.24 Score=45.60 Aligned_cols=173 Identities=11% Similarity=0.102 Sum_probs=116.8
Q ss_pred HHHHHHHHHHHHhhcCchhhhHHHhcCCcHHHHHhhcCCC-----HHHHHHHHHHHHHhhcc-ChhhHHHHHhcCCHHHH
Q 005044 181 VIRRAADAITNLAHENSSIKTRVRMEGGIPPLVELLEFTD-----TKVQRAAAGALRTLAFK-NDENKNQIVECNALPTL 254 (717)
Q Consensus 181 ~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~-----~~v~~~a~~~L~~L~~~-~~~~~~~~~~~g~i~~L 254 (717)
-...|+..|..++. +++.|..+....+.-.|..+|...+ ..+|..++++++.|+.. +++....+.+.+++|..
T Consensus 72 RVcnaLaLlQcvAs-hpetr~~Fl~a~iplyLyPfL~t~sk~r~fE~LRLtsLGVIgaLvK~dd~eVi~fLL~tEiiplC 150 (268)
T 2fv2_A 72 RVCNALALLQCVAS-HPETRSAFLAAHIPLFLYPFLHTVSKTRPFEYLRLTSLGVIGALVKTDEQEVINFLLTTEIIPLC 150 (268)
T ss_dssp HHHHHHHHHHHHHH-CTTTHHHHHHTTGGGGTHHHHHCCCCSHHHHHHHHHHHHHHHHHGGGCCHHHHHHHHHTTHHHHH
T ss_pred HHHHHHHHHHHHHc-CcchhhHHHHccchHHhhhhhccccCCCcchhhhhhHHHHHHHHhccCcHHHHHHHHhhhHHHHH
Confidence 33556667777776 8889999999888777777775432 57999999999999863 44555566788999999
Q ss_pred HHHHcCCCHHHHHHHHHHHHHhhcCChHHHHHHHH--------cCChHHH-HHhhccCChHHHHHHHHHHHHHhcCChhh
Q 005044 255 ILMLRSEDSAIHYEAVGVIGNLVHSSPNIKKEVLA--------AGALQPV-IGLLSSCCSESQREAALLLGQFAATDSDC 325 (717)
Q Consensus 255 ~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~--------~g~l~~L-~~ll~~~~~~~~~~a~~~L~~l~~~~~~~ 325 (717)
++.++.+++-.+..|..++..+..++... ..+.. ..++..+ .++..++++++.++...+-..++ .++..
T Consensus 151 Lrime~GselSKtvAtfIlqKIL~dd~GL-~YiC~t~eRF~av~~vL~~mV~~l~~~ps~RLLKhiircYlRLs-dn~ra 228 (268)
T 2fv2_A 151 LRIMESGSELSKTVATFILQKILLDDTGL-AYICQTYERFSHVAMILGKMVLQLSKEPSARLLKHVVRCYLRLS-DNPRA 228 (268)
T ss_dssp HHHHHHSCHHHHHHHHHHHHHHHHSHHHH-HHHTSSHHHHHHHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHT-TSHHH
T ss_pred HHHHhhccHHHHHHHHHHHHHHhccchhH-HHHHccHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHh-cCHHH
Confidence 99999999999999999998886543321 11111 1122222 23445677888888888888885 55665
Q ss_pred HHHHHh-------cCChHHHHHHhcCCCHHHHHHHHHHHHHh
Q 005044 326 KVHIVQ-------RGAVRPLIEMLQSPDVQLREMSAFALGRL 360 (717)
Q Consensus 326 ~~~l~~-------~~~l~~L~~~l~~~~~~v~~~a~~~L~~l 360 (717)
+..+.+ .|.+. ..+ .+|+.++.+-...+.|+
T Consensus 229 r~aL~~~LP~~Lrd~tf~---~~l-~~D~~~k~~l~qLl~n~ 266 (268)
T 2fv2_A 229 REALRQCLPDQLKDTTFA---QVL-KDDTTTKRWLAQLVKNL 266 (268)
T ss_dssp HHHHHHHSCGGGTSSTTH---HHH-TSCHHHHHHHHHHHHHS
T ss_pred HHHHHHhCcHHhhChHHH---HHH-hcCHHHHHHHHHHHHhc
Confidence 554433 12222 222 25677777766666655
No 143
>3l9t_A Putative uncharacterized protein SMU.31; hypothetical protein, unknown function; HET: EPE; 2.21A {Streptococcus mutans}
Probab=95.40 E-value=0.25 Score=45.13 Aligned_cols=132 Identities=16% Similarity=0.188 Sum_probs=90.2
Q ss_pred HHHhHHHHHHHHhcCChhhHHHHHhCCChHHHHHHHhccccCCCccchhHHHHHHHHHHHHHhh-cCchhhhHHHhcCCc
Q 005044 131 EVEKGSAFALGLLAVKPEHQQLIVDNGALSHLVNLLKRHMDSNCSRAVNSVIRRAADAITNLAH-ENSSIKTRVRMEGGI 209 (717)
Q Consensus 131 ~v~~~a~~~L~~l~~~~~~~~~~~~~~~i~~L~~lL~~~~~~~~~~~~~~~~~~a~~~L~~l~~-~~~~~~~~~~~~~~i 209 (717)
++|..|+.+|+.+. +. . ..++.+...+.... .|.+++.++.++..+|. .+++. .+
T Consensus 86 eVR~~Av~lLg~~~--~~-~------~~L~~ir~~va~D~-------~WrVre~lA~a~~~~~~~~~pe~--------~l 141 (240)
T 3l9t_A 86 QVRMYAVFLFGYLS--KD-K------EILIFMRDEVSKDN-------NWRVQEVLAKAFDEFCKKIEYKK--------AL 141 (240)
T ss_dssp HHHHHHHHHHHHTT--TS-H------HHHHHHHHTGGGCS-------CHHHHHHHHHHHHHHHHHHCTTT--------TH
T ss_pred HHHHHHHHHHHhcc--Cc-H------HHHHHHHHHhCCCC-------CccHHHHHHHHHHHHHHhcCHHH--------HH
Confidence 99999999998872 11 0 12344443233332 26899999999999985 44431 45
Q ss_pred HHHHHhhcCCCHHHHHHHHHHHHHhhccChhhHHHHHhcCCHHHHHHHHcCCCHHHHHHHHHHHHHhhcCChHHHHHHHH
Q 005044 210 PPLVELLEFTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSEDSAIHYEAVGVIGNLVHSSPNIKKEVLA 289 (717)
Q Consensus 210 ~~L~~ll~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~ 289 (717)
+.+...+++++..+|+.|...+..-+.. +..+.. ..-+++.|-.+..+++.-|+....+.|..++..+++....+++
T Consensus 142 ~~~~~W~~d~n~~VRR~Ase~~rpW~~~-~~~k~d--p~~ll~iL~~L~~D~s~yVrKSVan~LrD~SK~~Pd~V~~~~~ 218 (240)
T 3l9t_A 142 PIIDEWLKSSNLHTRRAATEGLRIWTNR-PYFKEN--PNEAIRRIADLKEDVSEYVRKSVGNALRDISKKFPDLVKIELK 218 (240)
T ss_dssp HHHHHHHHCSSHHHHHHHHHHTCSGGGS-TTTTTC--HHHHHHHHHTTTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHhcCCCHHHHHHHHHhhHHHhcc-chhhcC--HHHHHHHHHHhcCChHHHHHHHHHHHHHHHhhhCHHHHHHHHH
Confidence 7788899999999999999887654431 111100 0114566666777889999999999999999999876554443
No 144
>3a6p_A Exportin-5; exportin-5, RANGTP, nuclearexport, importin-BE family, nucleus, phosphoprotein, protein transport; HET: GTP; 2.92A {Homo sapiens}
Probab=94.93 E-value=2.1 Score=50.71 Aligned_cols=258 Identities=13% Similarity=0.101 Sum_probs=136.3
Q ss_pred HHHHHHHHHHHHHHhhc------ChhhHHHHHhCCChHHHHHhhcCCCCCccccCCCccchHHHhHHHHHHHHhc--CCh
Q 005044 76 DRAAAKRATHVLAELAK------NEEVVNWIVEGGAVPALVKHLQAPPTSEADRNLKPFEHEVEKGSAFALGLLA--VKP 147 (717)
Q Consensus 76 ~~~~~~~a~~~L~~l~~------~~~~~~~~~~~g~i~~L~~lL~~~~~~~~~~~~~~~~~~v~~~a~~~L~~l~--~~~ 147 (717)
+..++..|+..|.+... +++.+..+ + ..++.++...... ....++.++.+.+.+++.++ +-|
T Consensus 60 ~~~vR~~A~~~Lk~~I~~~W~~l~~e~k~~I-r----~~ll~~l~~~~~~-----~~~~~~~vr~kla~~la~Ia~~d~p 129 (1204)
T 3a6p_A 60 VAIVRHFGLQILEHVVKFRWNGMSRLEKVYL-K----NSVMELIANGTLN-----ILEEENHIKDALSRIVVEMIKREWP 129 (1204)
T ss_dssp CHHHHHHHHHHHHHHHHHSGGGSCHHHHHHH-H----HHHHHHHHHSSCC-----TTSSCHHHHHHHHHHHHHHHHHHST
T ss_pred CHHHHHHHHHHHHHHHHHhcccCCHHHHHHH-H----HHHHHHHHhhccc-----cccccHHHHHHHHHHHHHHHHHhCc
Confidence 45578899999988754 23444333 3 2344443322100 00012489999999999998 333
Q ss_pred hhHHHHHhCCChHHHHHHHhccccCCCccchhHHHHHHHHHHHHHhhcCc------hhhh-----HHHhc--CCcHHHHH
Q 005044 148 EHQQLIVDNGALSHLVNLLKRHMDSNCSRAVNSVIRRAADAITNLAHENS------SIKT-----RVRME--GGIPPLVE 214 (717)
Q Consensus 148 ~~~~~~~~~~~i~~L~~lL~~~~~~~~~~~~~~~~~~a~~~L~~l~~~~~------~~~~-----~~~~~--~~i~~L~~ 214 (717)
+. -.+.++.++.++..+ . .....++.+|..++.+.. ..+. .+... .+++.+..
T Consensus 130 ~~-----Wp~ll~~L~~~~~~~-~--------~~~e~~L~iL~~L~Eev~~~~~~~~~r~~~l~~~l~~~~~~I~~~~~~ 195 (1204)
T 3a6p_A 130 QH-----WPDMLIELDTLSKQG-E--------TQTELVMFILLRLAEDVVTFQTLPPQRRRDIQQTLTQNMERIFSFLLN 195 (1204)
T ss_dssp TT-----CTTHHHHHHHHHHTC-H--------HHHHHHHHHHHHHHHHHHTSCCSCHHHHHHHHHHHHHTHHHHHHHHHH
T ss_pred cc-----chHHHHHHHHHhcCC-H--------HHHHHHHHHHHHHHHHHccccchHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 21 135677788777652 1 456678888888875311 1111 11111 12222333
Q ss_pred hhcC-------------------CCHHHHHHHHHHHHHhhccChhhHHHHHhcC--CHHHHHHHHcCCCHHHHHHHHHHH
Q 005044 215 LLEF-------------------TDTKVQRAAAGALRTLAFKNDENKNQIVECN--ALPTLILMLRSEDSAIHYEAVGVI 273 (717)
Q Consensus 215 ll~~-------------------~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~g--~i~~L~~ll~~~~~~v~~~a~~~L 273 (717)
++.. .+..++..++.++.+...- .....+.+.. .++.++.++. +++++..|+.+|
T Consensus 196 iL~~~~~~~~~~~~~~~~~~~~~~~~~l~~~aL~~l~~~l~W--i~~~~i~~~~~~ll~~l~~~l~--~~~lr~~A~ecL 271 (1204)
T 3a6p_A 196 TLQENVNKYQQVKTDTSQESKAQANCRVGVAALNTLAGYIDW--VSMSHITAENCKLLEILCLLLN--EQELQLGAAECL 271 (1204)
T ss_dssp HHHHHHHHHHHHTTCSTTHHHHHHHHHHHHHHHHHHHTTTTT--SCHHHHHTTTSHHHHHHHHGGG--CTTTHHHHHHHH
T ss_pred HHHHHHHHHhcccccccchhhhhhhHHHHHHHHHHHHHHHhc--cCHHHHHhccchHHHHHHHHcC--CHHHHHHHHHHH
Confidence 3322 1234666777777655431 1112233332 6777777665 467899999999
Q ss_pred HHhhcCC--hHHHHHHHHc---CChHHHHHhhc--------cCChHHHHHHHHHHHHHhcCChhhHHHHHh---------
Q 005044 274 GNLVHSS--PNIKKEVLAA---GALQPVIGLLS--------SCCSESQREAALLLGQFAATDSDCKVHIVQ--------- 331 (717)
Q Consensus 274 ~~l~~~~--~~~~~~~~~~---g~l~~L~~ll~--------~~~~~~~~~a~~~L~~l~~~~~~~~~~l~~--------- 331 (717)
..++... +..+..++.. ..+..++.... +.+.+..+..+..+..+.. .....+.+
T Consensus 272 ~~i~s~~~~~~~~~~li~~l~~~~l~~l~~~~~~~~~~~~~e~d~e~~k~l~~ll~~lg~---~l~~l~~~~~~~~~~~~ 348 (1204)
T 3a6p_A 272 LIAVSRKGKLEDRKPLMVLFGDVAMHYILSAAQTADGGGLVEKHYVFLKRLCQVLCALGN---QLCALLGADSDVETPSN 348 (1204)
T ss_dssp HHHHTCCSCHHHHGGGGGGGSHHHHHHHHHHHHTCCCCSCCHHHHHHHHHHHHHHHHHHH---HHHHHHHTCSSCCCCTT
T ss_pred HHHHhCCCChhhHHHHHHHHhhHHHHHHHHHhhcCCCCCCccHHHHHHHHHHHHHHHHHH---HHHHHHhccccccChhH
Confidence 9998643 2221122210 11223444432 1124556666666666642 11111110
Q ss_pred -cCChHHHHHHhcCCCHHHHHHHHHHHHHhhcCC
Q 005044 332 -RGAVRPLIEMLQSPDVQLREMSAFALGRLAQDM 364 (717)
Q Consensus 332 -~~~l~~L~~~l~~~~~~v~~~a~~~L~~l~~~~ 364 (717)
.++++.++.+..+++..+...++.....+.++.
T Consensus 349 l~~~l~~lL~~t~~~~~~vs~~~l~fW~~ll~~~ 382 (1204)
T 3a6p_A 349 FGKYLESFLAFTTHPSQFLRSSTQMTWGALFRHE 382 (1204)
T ss_dssp HHHHHHHHHHHHTSSCHHHHHHHHHHHHHHHSCT
T ss_pred HHHHHHHHHHHHhCccHHhHHHHHHHHHHHHhcc
Confidence 245777888888888888777776666566653
No 145
>3gjx_A Exportin-1; transport, cytoplasm, nucleus, RNA-binding, acetylation, GTP-binding, HOST-virus interaction, nucleotide-binding, phosphoprotein; HET: GTP; 2.50A {Mus musculus} PDB: 3nby_A* 3nbz_A* 3nc0_A* 3nc1_A* 3gb8_A
Probab=94.92 E-value=7.3 Score=44.99 Aligned_cols=104 Identities=12% Similarity=0.036 Sum_probs=65.3
Q ss_pred CChhHHHHHHHHHHhccCCCcchHHHHHhcCccccccchhHHhhhHHHHHHHHHHHHHHhhhchHHHHHHHHhhc-----
Q 005044 386 KNGSLQHNAAFALYGLADNEDNVADFIRVGGVQKLQDGEFIVQATKDCVAKTLKRLEEKIHGRVLNHLLYLMRVA----- 460 (717)
Q Consensus 386 ~~~~v~~~a~~~L~~l~~~~~~~~~l~~~~~i~~L~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~L~~ll~~~----- 460 (717)
.++...+.++|+++.++..-... .+.. +-..+++.|+.+....
T Consensus 491 ~sW~~lea~~~aigaIag~~~~~---~E~~-----------------------------~Lp~vi~~Ll~L~e~~~~kd~ 538 (1073)
T 3gjx_A 491 WSWKNLNTLCWAIGSISGAMHEE---DEKR-----------------------------FLVTVIKDLLGLCEQKRGKDN 538 (1073)
T ss_dssp CCHHHHHHHHHHHHHTTTSSCHH---HHHH-----------------------------HHHHHHHHHHHHHHHSCSHHH
T ss_pred CCHHHHhHHHHHHHHHHCcCCcc---cccc-----------------------------hHHHHHHHHhcccccccccch
Confidence 35888999999999998532210 0000 0112566677776554
Q ss_pred chhHHHHHHHHHHhccCCCCCceeeecCCCHHHHHHHhcCCCchhhhhhHHHHHHhhhcccc
Q 005044 461 EKGVQRRVALALAHLCSPDDQRTIFIDGGGLELLLGLLGSTNPKQQLDGAVALFKLANKATT 522 (717)
Q Consensus 461 ~~~v~~~a~~aL~~l~~~~~~~~~~~~~~~l~~L~~ll~~~~~~v~~~a~~~l~~L~~~~~~ 522 (717)
.+.++...+++++.....-.....++ ...+..|++.+.++++.++..|+.++..++.+...
T Consensus 539 k~~vas~i~~vlgrY~~wl~~h~~~L-~~vl~~L~~~m~~~~~~vq~aA~~af~~i~~~C~~ 599 (1073)
T 3gjx_A 539 KAIIASNIMYIVGQYPRFLRAHWKFL-KTVVNKLFEFMHETHDGVQDMACDTFIKIAQKCRR 599 (1073)
T ss_dssp HHHHHHHHHHHHHHCHHHHHHCHHHH-HHHHHHHHHHTTCCSTTHHHHHHHHHHHHHHHTGG
T ss_pred hHHHHHHHHHHHhhhHHHHHhCHHHH-HHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHH
Confidence 23355556678887765422111111 23466677777888999999999999999887543
No 146
>3gjx_A Exportin-1; transport, cytoplasm, nucleus, RNA-binding, acetylation, GTP-binding, HOST-virus interaction, nucleotide-binding, phosphoprotein; HET: GTP; 2.50A {Mus musculus} PDB: 3nby_A* 3nbz_A* 3nc0_A* 3nc1_A* 3gb8_A
Probab=94.58 E-value=3 Score=48.19 Aligned_cols=322 Identities=10% Similarity=0.099 Sum_probs=156.9
Q ss_pred HHHHHHHhhhhhccccchHHHHHHHHHHHHHHHHhhcChhhHHHHHhCCChHHH-HHhhcCCCCCccccCCCccchHHHh
Q 005044 56 LSEVSAQVNVLNTTFSWLEADRAAAKRATHVLAELAKNEEVVNWIVEGGAVPAL-VKHLQAPPTSEADRNLKPFEHEVEK 134 (717)
Q Consensus 56 ~~~i~~l~~~L~~~~~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~g~i~~L-~~lL~~~~~~~~~~~~~~~~~~v~~ 134 (717)
....+.+++.+...+... .+..+...++.+|.....--. ...++..+.++.| ..+|.. +.++.
T Consensus 201 ~~~~~~Il~ll~~iL~~~-~~~~lv~~~L~~L~~~~sWI~-i~~i~~~~ll~~L~~~~L~~--------------~~~r~ 264 (1073)
T 3gjx_A 201 CNEFSQIFQLCQFVMENS-QNAPLVHATLETLLRFLNWIP-LGYIFETKLISTLIYKFLNV--------------PMFRN 264 (1073)
T ss_dssp HHTCHHHHHHHHHHHHHC-CCHHHHHHHHHHHHHHTTTSC-THHHHSSSHHHHHHHHTSSS--------------HHHHH
T ss_pred HHHHHHHHHHHHHHhccc-CCHHHHHHHHHHHHHHHHhcC-HHHhccchHHHHHHHHhcCC--------------hHHHH
Confidence 333455555555444322 233356677788888777211 1246677888877 466632 28999
Q ss_pred HHHHHHHHhc--CChhhHHHHHh--CCChHHHHHHHhccccC-----CCccchhHHHHHHHHHHHHHhhcC-------ch
Q 005044 135 GSAFALGLLA--VKPEHQQLIVD--NGALSHLVNLLKRHMDS-----NCSRAVNSVIRRAADAITNLAHEN-------SS 198 (717)
Q Consensus 135 ~a~~~L~~l~--~~~~~~~~~~~--~~~i~~L~~lL~~~~~~-----~~~~~~~~~~~~a~~~L~~l~~~~-------~~ 198 (717)
.|+.+|..+. +.++....+.. .+.+..+..++....+- .....+.+....-+..+..+...+ +.
T Consensus 265 aA~dcL~eIv~k~~~~~~~~~~~lf~~~~~~i~~ilp~~~~l~~~y~~~~~~d~e~~~~l~~~f~~~~e~~~~lIe~~p~ 344 (1073)
T 3gjx_A 265 VSLKCLTEIAGVSVSQYEEQFETLFTLTMMQLKQMLPLNTNIRLAYSNGKDDEQNFIQNLSLFLCTFLKEHGQLLEKRLN 344 (1073)
T ss_dssp HHHHHHHHHHHSCSGGGHHHHHHHHHHHHHHHHHHSCTTSCHHHHHHTCCTTHHHHHHHHHHHHHHHHHHHHHHHHHCGG
T ss_pred HHHHHHHHHHhccccchHHHHHHHHHHHHHHHHHhcCCchhHHHHHhccchhhHHHHHHHHHHHHHHHHHHHHHHhcCcc
Confidence 9999999998 33333222221 11122222222111000 000001145555566665554322 11
Q ss_pred hhhHHHhcCCcHHHHHhhcCCCHHHHHHHHHHHHHhhcc----Ch-----h------------hHHHHHh---cCCHHHH
Q 005044 199 IKTRVRMEGGIPPLVELLEFTDTKVQRAAAGALRTLAFK----ND-----E------------NKNQIVE---CNALPTL 254 (717)
Q Consensus 199 ~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~L~~~----~~-----~------------~~~~~~~---~g~i~~L 254 (717)
.+..+. .++..++.+...++.++...+...-..|... .+ . .+..+.. ..++..+
T Consensus 345 ~~~~l~--~~l~~ll~~s~~~d~ei~kitf~fW~~L~~~L~~e~~~~~~~~~~~~~~~~~~~~~~~~~y~~i~~~L~~vl 422 (1073)
T 3gjx_A 345 LREALM--EALHYMLLVSEVEETEIFKICLEYWNHLAAELYRESPFSTSASPLLSGSQHFDIPPRRQLYLTVLSKVRLLM 422 (1073)
T ss_dssp GHHHHH--HHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHHHHHCCSCCCCSSCTTSSCCSCSCHHHHTTHHHHHHHHHHH
T ss_pred chHHHH--HHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHhhccccccccccccccccccchhHHHHHHHHHHHHHHHH
Confidence 111111 1233455555678888888887776666531 10 0 0111110 0112222
Q ss_pred HHHHcCC-------------------C-H-----HHHHHHHHHHHHhhcCChHHHHHHHHcCChHHHHHhhcc--CChHH
Q 005044 255 ILMLRSE-------------------D-S-----AIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLSS--CCSES 307 (717)
Q Consensus 255 ~~ll~~~-------------------~-~-----~v~~~a~~~L~~l~~~~~~~~~~~~~~g~l~~L~~ll~~--~~~~~ 307 (717)
+.-+.-+ + . .+...++..+.++.. .+.... ..+.+.+.+.. .++..
T Consensus 423 I~~m~~P~ev~i~e~e~ge~~re~~~d~~~~~ly~~mrd~L~~lt~l~~--~~~~~i-----~~~~l~~~~~~~~~sW~~ 495 (1073)
T 3gjx_A 423 VSRMAKPEEVLVVENDQGEVVREFMKDTDSINLYKNMRETLVYLTHLDY--VDTEII-----MTKKLQNQVNGTEWSWKN 495 (1073)
T ss_dssp HHTCCCSCCEEEEECSSSCEEEEECSSCHHHHHHHHHHHHHHHHHHHCH--HHHHHH-----HHHHHHHHHTSCCCCHHH
T ss_pred HHhcCCCccccccCcccchHHHHHHhhcchHHHHHHHHHHHHHHhcCCH--HHHHHH-----HHHHHHHHhcCCCCCHHH
Confidence 2222211 0 1 122333333333311 111111 22333333332 46899
Q ss_pred HHHHHHHHHHHhcCChhhHHHHHhcCChHHHHHHhcCC---C--HHHHHHHHHHHHHhhcCCCCchhhHhcCChHHHHHh
Q 005044 308 QREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQSP---D--VQLREMSAFALGRLAQDMHNQAGIAHNGGLVPLLKL 382 (717)
Q Consensus 308 ~~~a~~~L~~l~~~~~~~~~~l~~~~~l~~L~~~l~~~---~--~~v~~~a~~~L~~l~~~~~~~~~l~~~~~l~~L~~l 382 (717)
...++|+++.++..-......-.=..+++.|+.+.... + +.++...+++++..++--.....+. ...+..|++.
T Consensus 496 lea~~~aigaIag~~~~~~E~~~Lp~vi~~Ll~L~e~~~~kd~k~~vas~i~~vlgrY~~wl~~h~~~L-~~vl~~L~~~ 574 (1073)
T 3gjx_A 496 LNTLCWAIGSISGAMHEEDEKRFLVTVIKDLLGLCEQKRGKDNKAIIASNIMYIVGQYPRFLRAHWKFL-KTVVNKLFEF 574 (1073)
T ss_dssp HHHHHHHHHHTTTSSCHHHHHHHHHHHHHHHHHHHHHSCSHHHHHHHHHHHHHHHHHCHHHHHHCHHHH-HHHHHHHHHH
T ss_pred HhHHHHHHHHHHCcCCcccccchHHHHHHHHhcccccccccchhHHHHHHHHHHHhhhHHHHHhCHHHH-HHHHHHHHHH
Confidence 99999999999743322111111123566677666433 2 3355556678877664211111221 2234556677
Q ss_pred hcCCChhHHHHHHHHHHhccC
Q 005044 383 LDSKNGSLQHNAAFALYGLAD 403 (717)
Q Consensus 383 l~~~~~~v~~~a~~~L~~l~~ 403 (717)
+++.++.|+..|+.++..++.
T Consensus 575 m~~~~~~vq~aA~~af~~i~~ 595 (1073)
T 3gjx_A 575 MHETHDGVQDMACDTFIKIAQ 595 (1073)
T ss_dssp TTCCSTTHHHHHHHHHHHHHH
T ss_pred HhcCCHHHHHHHHHHHHHHHH
Confidence 788899999999999999974
No 147
>1s1g_A Potassium voltage-gated channel subfamily D membe; K+ channels, tetramerization domain, T1 domain, transport PR; 2.60A {Homo sapiens} SCOP: d.42.1.2
Probab=94.56 E-value=0.067 Score=43.85 Aligned_cols=83 Identities=19% Similarity=0.222 Sum_probs=61.5
Q ss_pred ccEEEEEcCeEeehhHHHHhhccHHHHHhhcCC----CCCCCCcceEcCCCCHHHHHHHHHHHhcCccccchh-hHHHHH
Q 005044 550 SDVTFLVEGRRFYAHRICLLASSDAFRAMFDGG----YREKDARDIEIPNIRWEVFELMMRFIYTGSVDVTLD-IAQDLL 624 (717)
Q Consensus 550 ~Dv~~~~~~~~~~~h~~il~~~s~~f~~~~~~~----~~e~~~~~i~l~~~~~~~~~~~l~~~Yt~~~~~~~~-~~~~ll 624 (717)
.-|.+.|+|..|...+..|..... .+|... +.....+.+.+ |=++..|+.+|+|+-+|.+.++.+ .+..++
T Consensus 13 ~~V~LNVGG~~F~t~~~TL~~~p~---S~L~~~~~~~~~~~~~g~~Fi-DRdp~~F~~ILnflR~G~l~~p~~~~~~~l~ 88 (124)
T 1s1g_A 13 ELIVLNVSGRRFQTWRTTLERYPD---TLLGSTEKEFFFNEDTKEYFF-DRDPEVFRCVLNFYRTGKLHYPRYECISAYD 88 (124)
T ss_dssp CEEEEEETTEEEEEEHHHHTTSTT---SSTTSSGGGGTBCSSSCSEEE-CSCHHHHHHHHHHHHHSCBCCCTTSCHHHHH
T ss_pred CEEEEEeCCEEEEEeHHHHhcCCC---ceecccCCcccccCCCCcEEE-cCChHHHHHHHHHHhcCCCCCCCCcCHHHHH
Confidence 347889999999999999986432 334321 11122345555 569999999999999999987654 478899
Q ss_pred HHHHhhChHhHH
Q 005044 625 RAADQYLLEGLK 636 (717)
Q Consensus 625 ~~A~~~~~~~l~ 636 (717)
+-|++|+++.+.
T Consensus 89 ~Ea~fy~i~~l~ 100 (124)
T 1s1g_A 89 DELAFYGILPEI 100 (124)
T ss_dssp HHHHHTTCCGGG
T ss_pred HHHHHcCCChHH
Confidence 999999998873
No 148
>3kvt_A Potassium channel protein SHAW; tetramerization domain, molecular recogni zinc-binding; 2.00A {Aplysia californica} SCOP: d.42.1.2
Probab=94.39 E-value=0.024 Score=45.88 Aligned_cols=85 Identities=13% Similarity=0.137 Sum_probs=63.6
Q ss_pred cEEEEEcCeEeehhHHHHhhccH-HHHHhhcCCC-CCCCCcceEcCCCCHHHHHHHHHHHhcCccccchh-hHHHHHHHH
Q 005044 551 DVTFLVEGRRFYAHRICLLASSD-AFRAMFDGGY-REKDARDIEIPNIRWEVFELMMRFIYTGSVDVTLD-IAQDLLRAA 627 (717)
Q Consensus 551 Dv~~~~~~~~~~~h~~il~~~s~-~f~~~~~~~~-~e~~~~~i~l~~~~~~~~~~~l~~~Yt~~~~~~~~-~~~~ll~~A 627 (717)
-|.+.|+|..|...+..|..... ++.+|+.+.. .....+.+.+ |=++..|+.+|+|+-+|.+.++.+ ....++.-|
T Consensus 6 ~V~LNVGG~~f~T~~~TL~~~P~s~L~~l~~~~~~~~~~~g~~Fi-DRdp~~F~~ILnylR~G~l~~p~~~~~~~~~~Ea 84 (115)
T 3kvt_A 6 RVIINVGGIRHETYKATLKKIPATRLSRLTEGMLNYDPVLNEYFF-DRHPGVFAQIINYYRSGKLHYPTDVCGPLFEEEL 84 (115)
T ss_dssp EEEEEETTEEEEEEHHHHTTSCSSTTTTCCTTSTTEETTTTEEEE-CSCTTTHHHHHHHHHHSCBCCCSSSCHHHHHHHH
T ss_pred EEEEEECCEEEEecHHHHhcCCCccHHHHhcCCCCCCCCCCcEEE-ecChHHHHHHHHHhcCCCCCCCCcccHHHHHHHH
Confidence 47889999999999999987643 4555665421 1122345555 579999999999999999977653 467899999
Q ss_pred HhhChHhHH
Q 005044 628 DQYLLEGLK 636 (717)
Q Consensus 628 ~~~~~~~l~ 636 (717)
.+|+++...
T Consensus 85 ~fy~i~~~~ 93 (115)
T 3kvt_A 85 EFWGLDSNQ 93 (115)
T ss_dssp HHHTCCGGG
T ss_pred HHhCCChHH
Confidence 999997754
No 149
>3ebb_A Phospholipase A2-activating protein; armadillo repeat, structural genomics consortium, SGC, WD repeat, acetylation, ATP-binding; 1.90A {Homo sapiens}
Probab=94.31 E-value=1.2 Score=43.11 Aligned_cols=167 Identities=11% Similarity=0.060 Sum_probs=94.1
Q ss_pred HHHhHHHHHHHHhcCChhhHHHHHhCCChHHHHH-HHhccccCCCccchhHHHHHHHHHHHHHhhcCchhhhHHHhc--C
Q 005044 131 EVEKGSAFALGLLAVKPEHQQLIVDNGALSHLVN-LLKRHMDSNCSRAVNSVIRRAADAITNLAHENSSIKTRVRME--G 207 (717)
Q Consensus 131 ~v~~~a~~~L~~l~~~~~~~~~~~~~~~i~~L~~-lL~~~~~~~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~--~ 207 (717)
+.+-.++..+.-+.-.+.....+...+.-..++. ++..-.+...+ ..+..+++++.|+.. ++..+..+... .
T Consensus 117 ~~~fPvLDLlRl~~l~p~~~~~~~~~~~~~~l~~~l~~~~~~~~~p----~n~ml~lR~l~NlF~-~~~g~~~l~~~~~~ 191 (304)
T 3ebb_A 117 DIVFPALDILRLSIKHPSVNENFCNEKEGAQFSSHLINLLNPKGKP----ANQLLALRTFCNCFV-GQAGQKLMMSQRES 191 (304)
T ss_dssp TTCHHHHHHHHHHTTSHHHHHHHHSTTTHHHHHHHHHHTTCTTSCH----HHHHHHHHHHHHGGG-SHHHHHHHHHTHHH
T ss_pred HhHHHHHHHHHHHHcCccHHHHhhccccchHHHHHHHHhcCCCCCh----HHHHHHHHHHHHccC-CchhHHHHHHHHHH
Confidence 3445666666666666666555554433334442 33322111111 457889999999987 55555554431 2
Q ss_pred CcHHHHHhhcCCCHHHHHHHHHHHHHhhccChhhHHHHHhcCCHHHHHHHHcC-CCHHHHHHHHHHHHHhhcCChHHHHH
Q 005044 208 GIPPLVELLEFTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRS-EDSAIHYEAVGVIGNLVHSSPNIKKE 286 (717)
Q Consensus 208 ~i~~L~~ll~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~g~i~~L~~ll~~-~~~~v~~~a~~~L~~l~~~~~~~~~~ 286 (717)
+++.+...+.+++..++..++..+.|++.........-....++..+..+++. .+.+....++-+|+++...+....+.
T Consensus 192 il~~~~~~~~~~nknl~iA~ATl~~NlAv~~~~~~~~~~~~~ll~~l~~il~~~~d~EalyR~LvALGtL~~~~~~~~~l 271 (304)
T 3ebb_A 192 LMSHAIELKSGSNKNIHIALATLALNYSVCFHKDHNIEGKAQCLSLISTILEVVQDLEATFRLLVALGTLISDDSNAVQL 271 (304)
T ss_dssp HHHHHHGGGSSCCHHHHHHHHHHHHHHHHHHHHSCCHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHhcCCChhHHHHHHHHHHHHHHHHhhcCCchHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHhCChhHHHH
Confidence 33445555556789999999999999986211100000011134445555543 57899999999999998776554433
Q ss_pred HHHcCChHHHHHhhcc
Q 005044 287 VLAAGALQPVIGLLSS 302 (717)
Q Consensus 287 ~~~~g~l~~L~~ll~~ 302 (717)
...-|....+-.+...
T Consensus 272 ak~l~~~~~v~~~~~~ 287 (304)
T 3ebb_A 272 AKSLGVDSQIKKYSSV 287 (304)
T ss_dssp HHHTTHHHHGGGGGGC
T ss_pred HHHcCHHHHHHHHHhC
Confidence 3333444444444433
No 150
>3u0r_A Apoptosis inhibitor 5; heat repeat, armadillo repeat, lysine acetylation; 2.50A {Homo sapiens} PDB: 3v6a_A
Probab=93.83 E-value=2.8 Score=42.61 Aligned_cols=164 Identities=17% Similarity=0.065 Sum_probs=108.3
Q ss_pred CCCHHHHHHHHHHHHHhhccChhhHHHHHhcCCHHHHHHHHcCCCHHHHHHHHHHHHHhhcCChHHHHHHHHcCChHHHH
Q 005044 218 FTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSEDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVI 297 (717)
Q Consensus 218 ~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~l~~L~ 297 (717)
.++...+..|+..+.....+.|+.... ++..++.+..+++..||..|+..|..+|.. +.. ..+.+.|.
T Consensus 39 kg~~k~K~LaaQ~I~kffk~FP~l~~~-----Ai~a~lDLcEDed~~IR~qaik~Lp~~ck~-~~i------~kiaDvL~ 106 (507)
T 3u0r_A 39 KGGTKEKRLAAQFIPKFFKHFPELADS-----AINAQLDLCEDEDVSIRRQAIKELPQFATG-ENL------PRVADILT 106 (507)
T ss_dssp GSCHHHHHHHHHHHHHHGGGCGGGHHH-----HHHHHHHHHTCSSHHHHHHHHHHGGGGCCT-TCH------HHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHhhChhhHHH-----HHHHHHHHHhcccHHHHHHHHHhhHHHhhh-hhh------hhHHHHHH
Confidence 457899999999999998888887655 456799999999999999999999999876 322 23577899
Q ss_pred HhhccCChHHHHHHHHHHHHHhcCChhhHHHHHhcCChHHHHHHhcCCCHHHHHHHHHHHHHhhcC--CCCchhhHhcCC
Q 005044 298 GLLSSCCSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQSPDVQLREMSAFALGRLAQD--MHNQAGIAHNGG 375 (717)
Q Consensus 298 ~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~l~~~~~l~~L~~~l~~~~~~v~~~a~~~L~~l~~~--~~~~~~l~~~~~ 375 (717)
++|..+++.-...+-.+|..+...++.. .+..+...+..++..+|+.++..|..=... ...-..-++.-+
T Consensus 107 QlLqtdd~~E~~~V~~sL~sllk~Dpk~--------tl~~lf~~i~~~~e~~Rer~lkFi~~kl~~l~~~~l~~E~E~~i 178 (507)
T 3u0r_A 107 QLLQTDDSAEFNLVNNALLSIFKMDAKG--------TLGGLFSQILQGEDIVRERAIKFLSTKLKTLPDEVLTKEVEELI 178 (507)
T ss_dssp HHTTCCCHHHHHHHHHHHHHHHHHCHHH--------HHHHHHHHHHHSCHHHHHHHHHHHHHHGGGSCTTTSCHHHHHHH
T ss_pred HHHhccchHHHHHHHHHHHHHHhcChHH--------HHHHHHHHHcccchHHHHHHHHHHHHHHhhcchhhccHHHHHHH
Confidence 9999988776666666776665444332 334455555456788998877777553321 111222233334
Q ss_pred hHHHHHhhcCCChhHHHHHHHHHHhc
Q 005044 376 LVPLLKLLDSKNGSLQHNAAFALYGL 401 (717)
Q Consensus 376 l~~L~~ll~~~~~~v~~~a~~~L~~l 401 (717)
+..+.++|.+-...=-.....+|..+
T Consensus 179 ~~~ikK~L~DVT~~EF~L~m~lL~~l 204 (507)
T 3u0r_A 179 LTESKKVLEDVTGEEFVLFMKILSGL 204 (507)
T ss_dssp HHHHHHHTTSCCHHHHHHHHHHHHTS
T ss_pred HHHHHHHhccccHHHHHHHHHHHHhc
Confidence 44455666544333333344455444
No 151
>3ebb_A Phospholipase A2-activating protein; armadillo repeat, structural genomics consortium, SGC, WD repeat, acetylation, ATP-binding; 1.90A {Homo sapiens}
Probab=93.70 E-value=1.2 Score=43.15 Aligned_cols=133 Identities=12% Similarity=0.041 Sum_probs=79.6
Q ss_pred CCHHHHHHHHHHHHHhhccChhhHHHHHhc--CCHHHHHHHHcCCCHHHHHHHHHHHHHhhcCChHHHHHHHHcCChHHH
Q 005044 219 TDTKVQRAAAGALRTLAFKNDENKNQIVEC--NALPTLILMLRSEDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPV 296 (717)
Q Consensus 219 ~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~--g~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~l~~L 296 (717)
..+..+..++++++|+-. .+..+..+... .+++.+...+.+++..++..++..+.|++.........-....++..+
T Consensus 160 ~~p~n~ml~lR~l~NlF~-~~~g~~~l~~~~~~il~~~~~~~~~~nknl~iA~ATl~~NlAv~~~~~~~~~~~~~ll~~l 238 (304)
T 3ebb_A 160 GKPANQLLALRTFCNCFV-GQAGQKLMMSQRESLMSHAIELKSGSNKNIHIALATLALNYSVCFHKDHNIEGKAQCLSLI 238 (304)
T ss_dssp SCHHHHHHHHHHHHHGGG-SHHHHHHHHHTHHHHHHHHHGGGSSCCHHHHHHHHHHHHHHHHHHHHSCCHHHHHHHHHHH
T ss_pred CChHHHHHHHHHHHHccC-CchhHHHHHHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHHhhcCCchHHHHHHHHH
Confidence 356678999999999987 56666665542 344555555556789999999999999975311100000001134444
Q ss_pred HHhhcc-CChHHHHHHHHHHHHHhcCChhhHHHHHhcCChHHHHHHhcC-CCHHHHHH
Q 005044 297 IGLLSS-CCSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQS-PDVQLREM 352 (717)
Q Consensus 297 ~~ll~~-~~~~~~~~a~~~L~~l~~~~~~~~~~l~~~~~l~~L~~~l~~-~~~~v~~~ 352 (717)
.+++.. .+.+....++.+|+++...+.+.......-++-..+-..... ..+.+.+.
T Consensus 239 ~~il~~~~d~EalyR~LvALGtL~~~~~~~~~lak~l~~~~~v~~~~~~~~~~kv~~~ 296 (304)
T 3ebb_A 239 STILEVVQDLEATFRLLVALGTLISDDSNAVQLAKSLGVDSQIKKYSSVSEPAKVSEC 296 (304)
T ss_dssp HHHHTTCCCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHGGGGGGCCSSHHHHHH
T ss_pred HHHHhccCCHHHHHHHHHHHHHHHhCChhHHHHHHHcCHHHHHHHHHhCCCchhHHHH
Confidence 455543 467888899999999986655444333333444444444443 34555444
No 152
>3c2g_A SYS-1 protein; beta-catenin, phylogeny, SYS-1, developmental protein, DNA-binding, nucleus; 2.50A {Caenorhabditis elegans} PDB: 3c2h_A*
Probab=93.30 E-value=0.82 Score=43.81 Aligned_cols=128 Identities=14% Similarity=0.241 Sum_probs=94.4
Q ss_pred HHHHhhcCchhhhHHHhcCCcHHHHHhhcCCCHHHHHHHHHHHHHhhccChhhHHHHHhcCCHHHHHHHHc-CCCHHHHH
Q 005044 189 ITNLAHENSSIKTRVRMEGGIPPLVELLEFTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLR-SEDSAIHY 267 (717)
Q Consensus 189 L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~g~i~~L~~ll~-~~~~~v~~ 267 (717)
|.++..++...-.-++..+|+..+...+.-++.++.+..++.|...+.. ..... .--...+|.+++.+. ++++++..
T Consensus 266 LL~LLmHdSnAIDGFVk~DGv~~I~TvinYpN~~l~RaG~KLLLQVSDa-ksL~~-t~L~e~LPFi~~~i~~h~eDdvvY 343 (619)
T 3c2g_A 266 LLGLLLHDSDAIDGFVRSDGVGAITTVVQYPNNDLIRAGCKLLLQVSDA-KALAK-TPLENILPFLLRLIEIHPDDEVIY 343 (619)
T ss_dssp HHHHHCCSHHHHHHHHHTTHHHHHHHHTTSSCHHHHHHHHHHHHHHTTC-GGGGT-SCCTTHHHHHHHHHHHCCCHHHHH
T ss_pred HHHHHhcccccccceeecccceeEEEEeecCCcHHHHhhhheeeeecch-HHHhh-ccccccchHHHHHhccCCCcceEE
Confidence 3445555666667788999999999999999999999999999988742 21111 111245777777775 67899999
Q ss_pred HHHHHHHHhhcCChHHHHHHHHcCChHHHHHhhccC-------ChHHHHHHHHHHHHH
Q 005044 268 EAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLSSC-------CSESQREAALLLGQF 318 (717)
Q Consensus 268 ~a~~~L~~l~~~~~~~~~~~~~~g~l~~L~~ll~~~-------~~~~~~~a~~~L~~l 318 (717)
...+.|+|...+....++..+..|+++.|-..+... +..-+..+|..++|.
T Consensus 344 SGTGFLSNVVAHKq~VKelAI~~nAI~LLh~~I~ky~~Lsdf~ea~Kkk~aC~IicN~ 401 (619)
T 3c2g_A 344 SGTGFLSNVVAHKQHVKDIAIRSNAIFLLHTIISKYPRLDELTDAPKRNRVCEIICNC 401 (619)
T ss_dssp HHHHHHHHHSTTCHHHHHHHHHTTHHHHHHHHHHTSCCGGGCCSHHHHHHHHHHHHHH
T ss_pred ecchHHHHHHhcccchHHHHhccCcHHHHHHHHhhCCChhhhhhhhhhcchHHHHHHH
Confidence 999999999888777778888899999888877532 234455666666654
No 153
>2nz0_B Potassium voltage-gated channel subfamily D membe; KV4.3, kchip1, membrane protein; 3.20A {Homo sapiens} PDB: 2i2r_A
Probab=93.18 E-value=0.11 Score=43.47 Aligned_cols=84 Identities=19% Similarity=0.212 Sum_probs=61.9
Q ss_pred CCccEEEEEcCeEeehhHHHHhhccHHHHHhhcCC----CCCCCCcceEcCCCCHHHHHHHHHHHhcCccccchh-hHHH
Q 005044 548 TLSDVTFLVEGRRFYAHRICLLASSDAFRAMFDGG----YREKDARDIEIPNIRWEVFELMMRFIYTGSVDVTLD-IAQD 622 (717)
Q Consensus 548 ~~~Dv~~~~~~~~~~~h~~il~~~s~~f~~~~~~~----~~e~~~~~i~l~~~~~~~~~~~l~~~Yt~~~~~~~~-~~~~ 622 (717)
...-|.+.|+|..|...+..|..... .+|... +.....+.+.+ |=++..|+.+|+|+-+|.+.++.+ .+..
T Consensus 33 ~~~~V~LNVGG~~F~T~~~TL~~~P~---S~L~~~~~~~~~~~~~g~yFi-DRdp~~F~~ILnflR~G~l~~p~~~~~~~ 108 (140)
T 2nz0_B 33 QDELIVLNVSGRRFQTWRTTLERYPD---TLLGSTEKEFFFNEDTKEYFF-DRDPEVFRCVLNFYRTGKLHYPRYECISA 108 (140)
T ss_dssp CCCEEEEEETTEEEEEEHHHHHTCTT---STTTSGGGGGSEETTTTEEEE-CSCHHHHHHHHHHHHHSSBCCCTTSCHHH
T ss_pred CCCEEEEEECCEEEEeeHHHHhcCCC---eeecccCCcccccCCCCeEEE-eCCcHHHHHHHHHHhcCCcCCCCCcCHHH
Confidence 34457899999999999999986432 334321 01112344555 579999999999999999986654 4788
Q ss_pred HHHHHHhhChHhH
Q 005044 623 LLRAADQYLLEGL 635 (717)
Q Consensus 623 ll~~A~~~~~~~l 635 (717)
+++-|++|+++.+
T Consensus 109 l~eEa~fy~i~~l 121 (140)
T 2nz0_B 109 YDDELAFYGILPE 121 (140)
T ss_dssp HHHHHHHHTCCGG
T ss_pred HHHHHHHcCCChH
Confidence 9999999999887
No 154
>1nn7_A Potassium channel KV4.2; teteramerization domain, voltage gated potassium channel SHAL, membrane protein; 2.10A {Rattus norvegicus} SCOP: d.42.1.2
Probab=93.02 E-value=0.049 Score=43.26 Aligned_cols=80 Identities=14% Similarity=0.164 Sum_probs=58.9
Q ss_pred EEEEEcCeEeehhHHHHhhccHHHHHhhcCCC----CCCCCcceEcCCCCHHHHHHHHHHHhcCccccchh-hHHHHHHH
Q 005044 552 VTFLVEGRRFYAHRICLLASSDAFRAMFDGGY----REKDARDIEIPNIRWEVFELMMRFIYTGSVDVTLD-IAQDLLRA 626 (717)
Q Consensus 552 v~~~~~~~~~~~h~~il~~~s~~f~~~~~~~~----~e~~~~~i~l~~~~~~~~~~~l~~~Yt~~~~~~~~-~~~~ll~~ 626 (717)
|.+.|+|..|...+..|..... .++.... .....+.+.+ |=++..|+.+|+|+-+|.+.++.+ .+..+..-
T Consensus 2 V~LNVGG~~f~t~~~TL~~~p~---s~L~~~~~~~~~~~~~~~~Fi-DRdp~~F~~ILnflR~g~l~~p~~~~~~~l~~E 77 (105)
T 1nn7_A 2 IVLNVSGTRFQTWQDTLERYPD---TLLGSSERDFFYHPETQQYFF-DRDPDIFRHILNFYRTGKLHYPRHECISAYDEE 77 (105)
T ss_dssp EEEEETTEEEEECHHHHHTSCS---SSTTSGGGGGGEEGGGTEEEE-CSCTTTHHHHHHHHHHSCBCCCTTSCHHHHHHH
T ss_pred EEEEECCEEEEEeHHHHhcCCC---ccccccCCcccccCCCCcEEE-eCCcHHHHHHHHHHhcCCCCCCCCcCHHHHHHH
Confidence 6788999999999999986542 2333210 0112234444 569999999999999999986654 47889999
Q ss_pred HHhhChHhH
Q 005044 627 ADQYLLEGL 635 (717)
Q Consensus 627 A~~~~~~~l 635 (717)
|++|+++.+
T Consensus 78 a~fy~i~~l 86 (105)
T 1nn7_A 78 LAFFGLIPE 86 (105)
T ss_dssp HHHHTCCSC
T ss_pred HHHcCCCHH
Confidence 999999886
No 155
>2f31_A Diaphanous protein homolog 1; formin,MDIA1, protein-protein complex, armadillo repeats, structural protein; 2.10A {Mus musculus}
Probab=92.82 E-value=3.1 Score=38.55 Aligned_cols=163 Identities=20% Similarity=0.238 Sum_probs=101.0
Q ss_pred hhhHHHHHhCCChHHHHHHHhccccCCCc---cchhHHHHHHHHHHHHHhhcCchhhhHHHhcCCcHHHHHhhcCCCHHH
Q 005044 147 PEHQQLIVDNGALSHLVNLLKRHMDSNCS---RAVNSVIRRAADAITNLAHENSSIKTRVRMEGGIPPLVELLEFTDTKV 223 (717)
Q Consensus 147 ~~~~~~~~~~~~i~~L~~lL~~~~~~~~~---~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v 223 (717)
....+.+ ..+|+..|+.+|......... .........++.+|..+..........+...+.+..+...+.++++.+
T Consensus 34 ~~Wv~~F-~~~Gl~~L~~~L~~~~~~~~~~~~~~~~~~~~~~l~CLkalmn~~~G~~~vl~~~~~i~~l~~~L~s~~~~~ 112 (233)
T 2f31_A 34 VSWVQTF-GAEGLASLLDILKRLHDEKEETSGNYDSRNQHEIIRCLKAFMNNKFGIKTMLETEEGILLLVRAMDPAVPNM 112 (233)
T ss_dssp HHHHHHH-HHHHHHHHHHHHHHHHTCC-----CCHHHHHHHHHHHHHHHTSSHHHHHHHHTSSSHHHHHHTTCCTTSHHH
T ss_pred cHHHHHH-HHhHHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHhCChHHHHHHHcCcHHHHHHHHHhCCCCchH
Confidence 3444445 457788888888764321110 112367788999999988755555555555667888888898899999
Q ss_pred HHHHHHHHHHhhccCh-hh-HHHHH----------hcCCHHHHHHHHcC-CCHHHHHHHHHHHHHhhcCChH------HH
Q 005044 224 QRAAAGALRTLAFKND-EN-KNQIV----------ECNALPTLILMLRS-EDSAIHYEAVGVIGNLVHSSPN------IK 284 (717)
Q Consensus 224 ~~~a~~~L~~L~~~~~-~~-~~~~~----------~~g~i~~L~~ll~~-~~~~v~~~a~~~L~~l~~~~~~------~~ 284 (717)
+..++..|..+|.-.. .. ...+. +..-+..++..++. .+.+.+..+...+-.+..+.++ .+
T Consensus 113 r~~~leLL~~lc~~~~~~G~~~~VL~Al~~~~~~~e~~RF~~lv~~l~~~~~~e~~~~~m~lIN~li~~~~dl~~R~~lR 192 (233)
T 2f31_A 113 MIDAAKLLSALCILPQPEDMNERVLEAMTERAEMDEVERFQPLLDGLKSGTSIALKVGCLQLINALITPAEELDFRVHIR 192 (233)
T ss_dssp HHHHHHHHHHHHTCSSSSCHHHHHHHHHHHHHHHHTSCTTHHHHHTTSTTSCHHHHHHHHHHHHHHHTTCCCHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCCCChHHHHHHHHHHHHHhCCcchHHHHHHHHhcCChHHHHHHHHHHHHHHHCCCCCHHHHHHHH
Confidence 9999999998887433 23 33322 22345567777764 4567777777777666655432 23
Q ss_pred HHHHHcCChHHHHHhhccCChHHHHH
Q 005044 285 KEVLAAGALQPVIGLLSSCCSESQRE 310 (717)
Q Consensus 285 ~~~~~~g~l~~L~~ll~~~~~~~~~~ 310 (717)
..+...|+.+.+-.+=...++++..+
T Consensus 193 ~ef~~~Gl~~il~~l~~~~~~~L~~Q 218 (233)
T 2f31_A 193 SELMRLGLHQVLQELREIENEDMKVQ 218 (233)
T ss_dssp HHHHHTTHHHHHHHHHHCCCHHHHHH
T ss_pred HHHHHCChHHHHHHHhccCCHHHHHH
Confidence 44455566555554444445554443
No 156
>1lsh_A Lipovitellin (LV-1N, LV-1C); vitellogenin, lipoprotein, plasma apolipoprote apolipoprotein B, APOB; HET: PLD UPL; 1.90A {Ichthyomyzon unicuspis} SCOP: a.118.4.1 f.7.1.1 f.7.1.1
Probab=92.61 E-value=6.9 Score=45.46 Aligned_cols=170 Identities=15% Similarity=0.122 Sum_probs=104.3
Q ss_pred cHHHHHhhcC----CCHHHHHHHHHHHHHhhc----cChhhHHHHHhcCCHHHHHHHHcCCCHHHHHHHHHHHHHhhcCC
Q 005044 209 IPPLVELLEF----TDTKVQRAAAGALRTLAF----KNDENKNQIVECNALPTLILMLRSEDSAIHYEAVGVIGNLVHSS 280 (717)
Q Consensus 209 i~~L~~ll~~----~~~~v~~~a~~~L~~L~~----~~~~~~~~~~~~g~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~ 280 (717)
+..+..++++ .++.++..++-++..|+. ..+.+....+. .+...+.+.+...+.+-+..++.+|+|+..
T Consensus 393 l~~~~~l~~~~~~~~~~~l~~ta~La~gslV~k~c~~~~~c~~~~v~-~i~~~l~~~~~~~~~~~~~~~LkaLGN~g~-- 469 (1056)
T 1lsh_A 393 LSYARELLNTSFIRNRPILRKTAVLGYGSLVFRYCANTVSCPDELLQ-PLHDLLSQSSDRAKEEEIVLALKALGNAGQ-- 469 (1056)
T ss_dssp HHHHHHHHTCHHHHTCHHHHHHHHHHHHHHHHHHHTTCSSCCGGGTH-HHHHHHHHHHHTTCHHHHHHHHHHHHHHTC--
T ss_pred HHHHHHHHhCcccccCHHHHHHHHHHHHHHHHHHhccCCCCCHHHHH-HHHHHHHHHHhcCChHHHHHHHHHhhccCC--
Confidence 3455666654 467777777777777654 11111111111 123334455566778888999999999943
Q ss_pred hHHHHHHHHcCChHHHHHhhcc-------CChHHHHHHHHHHHHHhcCChhhHHHHHhcCChHHHHHHh--cCCCHHHHH
Q 005044 281 PNIKKEVLAAGALQPVIGLLSS-------CCSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEML--QSPDVQLRE 351 (717)
Q Consensus 281 ~~~~~~~~~~g~l~~L~~ll~~-------~~~~~~~~a~~~L~~l~~~~~~~~~~l~~~~~l~~L~~~l--~~~~~~v~~ 351 (717)
+. .++.|..++.. ...+++..|+++|.+++...+... -+.++++. ...++++|.
T Consensus 470 p~---------~l~~l~~~l~~~~~~~~~~~~rvr~aAi~ALr~~~~~~p~~v--------~~il~~i~~n~~e~~EvRi 532 (1056)
T 1lsh_A 470 PN---------SIKKIQRFLPGQGKSLDEYSTRVQAEAIMALRNIAKRDPRKV--------QEIVLPIFLNVAIKSELRI 532 (1056)
T ss_dssp GG---------GHHHHHTTSTTSSSCCCCSCHHHHHHHHHTTTTGGGTCHHHH--------HHHHHHHHHCTTSCHHHHH
T ss_pred hh---------HHHHHHHhhcCccccccccchHHHHHHHHHHHHhhhhchHHH--------HHHHHHHhcCCCCChHHHH
Confidence 32 36667776642 235788899999999975444332 24567777 447899999
Q ss_pred HHHHHHHHhhcCCCCchhhHhcCChHHHHHhhc-CCChhHHHHHHHHHHhccCCCcc
Q 005044 352 MSAFALGRLAQDMHNQAGIAHNGGLVPLLKLLD-SKNGSLQHNAAFALYGLADNEDN 407 (717)
Q Consensus 352 ~a~~~L~~l~~~~~~~~~l~~~~~l~~L~~ll~-~~~~~v~~~a~~~L~~l~~~~~~ 407 (717)
.|+..|.... +. . ..+..+...+. +.+..|.......|.+++.....
T Consensus 533 aA~~~Lm~t~--P~-~------~~l~~ia~~l~~E~~~QV~sfv~S~l~sla~s~~P 580 (1056)
T 1lsh_A 533 RSCIVFFESK--PS-V------ALVSMVAVRLRREPNLQVASFVYSQMRSLSRSSNP 580 (1056)
T ss_dssp HHHHHHHHTC--CC-H------HHHHHHHHHHTTCSCHHHHHHHHHHHHHHTTCCSG
T ss_pred HHHHHHHHHC--cC-H------HHHHHHHHHHhhCchHHHHHHHHHHHHHHHhcCCc
Confidence 9887774322 11 1 12344555554 36778888888888888775433
No 157
>3c2g_A SYS-1 protein; beta-catenin, phylogeny, SYS-1, developmental protein, DNA-binding, nucleus; 2.50A {Caenorhabditis elegans} PDB: 3c2h_A*
Probab=92.46 E-value=3 Score=40.02 Aligned_cols=135 Identities=18% Similarity=0.265 Sum_probs=98.4
Q ss_pred HHhHHHHHHHHhcCChhhHHHHHhCCChHHHHHHHhccccCCCccchhHHHHHHHHHHHHHhhcCchhhhHHHhcCCcHH
Q 005044 132 VEKGSAFALGLLAVKPEHQQLIVDNGALSHLVNLLKRHMDSNCSRAVNSVIRRAADAITNLAHENSSIKTRVRMEGGIPP 211 (717)
Q Consensus 132 v~~~a~~~L~~l~~~~~~~~~~~~~~~i~~L~~lL~~~~~~~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~ 211 (717)
|...+...|+-+..+...-+-++...++..+...+.-.++ ++.+..+..|...+.... .. ..--.+.+|.
T Consensus 259 VvtR~FDLL~LLmHdSnAIDGFVk~DGv~~I~TvinYpN~--------~l~RaG~KLLLQVSDaks-L~-~t~L~e~LPF 328 (619)
T 3c2g_A 259 VIIRTFDLLGLLLHDSDAIDGFVRSDGVGAITTVVQYPNN--------DLIRAGCKLLLQVSDAKA-LA-KTPLENILPF 328 (619)
T ss_dssp HHHHHHHHHHHHCCSHHHHHHHHHTTHHHHHHHHTTSSCH--------HHHHHHHHHHHHHTTCGG-GG-TSCCTTHHHH
T ss_pred HHHHHHHHHHHHhcccccccceeecccceeEEEEeecCCc--------HHHHhhhheeeeecchHH-Hh-hccccccchH
Confidence 4445666666666666677788899999999999988776 899999999888775222 11 1111245677
Q ss_pred HHHhhc-CCCHHHHHHHHHHHHHhhccChhhHHHHHhcCCHHHHHHHHcC-------CCHHHHHHHHHHHHHh
Q 005044 212 LVELLE-FTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRS-------EDSAIHYEAVGVIGNL 276 (717)
Q Consensus 212 L~~ll~-~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~g~i~~L~~ll~~-------~~~~v~~~a~~~L~~l 276 (717)
+++.+. +++.++.....+.|.|.+.+....++..+..|+++.|...+.. .+..-+..+|.+++|.
T Consensus 329 i~~~i~~h~eDdvvYSGTGFLSNVVAHKq~VKelAI~~nAI~LLh~~I~ky~~Lsdf~ea~Kkk~aC~IicN~ 401 (619)
T 3c2g_A 329 LLRLIEIHPDDEVIYSGTGFLSNVVAHKQHVKDIAIRSNAIFLLHTIISKYPRLDELTDAPKRNRVCEIICNC 401 (619)
T ss_dssp HHHHHHHCCCHHHHHHHHHHHHHHSTTCHHHHHHHHHTTHHHHHHHHHHTSCCGGGCCSHHHHHHHHHHHHHH
T ss_pred HHHHhccCCCcceEEecchHHHHHHhcccchHHHHhccCcHHHHHHHHhhCCChhhhhhhhhhcchHHHHHHH
Confidence 777764 6889999999999999998887878888889999998886642 2444566677766664
No 158
>1lsh_A Lipovitellin (LV-1N, LV-1C); vitellogenin, lipoprotein, plasma apolipoprote apolipoprotein B, APOB; HET: PLD UPL; 1.90A {Ichthyomyzon unicuspis} SCOP: a.118.4.1 f.7.1.1 f.7.1.1
Probab=92.11 E-value=8.8 Score=44.58 Aligned_cols=126 Identities=14% Similarity=0.161 Sum_probs=88.3
Q ss_pred HHHhhcCCCHHHHHHHHHHHHHhhccChhhHHHHHhcCCHHHHHHHHcC-------CCHHHHHHHHHHHHHhhcCChHHH
Q 005044 212 LVELLEFTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRS-------EDSAIHYEAVGVIGNLVHSSPNIK 284 (717)
Q Consensus 212 L~~ll~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~g~i~~L~~ll~~-------~~~~v~~~a~~~L~~l~~~~~~~~ 284 (717)
+.+.+...+.+-+..++++|.|+.. + ..++.|.+++.. ....++..|+++|..++...+..
T Consensus 445 l~~~~~~~~~~~~~~~LkaLGN~g~--p---------~~l~~l~~~l~~~~~~~~~~~~rvr~aAi~ALr~~~~~~p~~- 512 (1056)
T 1lsh_A 445 LSQSSDRAKEEEIVLALKALGNAGQ--P---------NSIKKIQRFLPGQGKSLDEYSTRVQAEAIMALRNIAKRDPRK- 512 (1056)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHTC--G---------GGHHHHHTTSTTSSSCCCCSCHHHHHHHHHTTTTGGGTCHHH-
T ss_pred HHHHHhcCChHHHHHHHHHhhccCC--h---------hHHHHHHHhhcCccccccccchHHHHHHHHHHHHhhhhchHH-
Confidence 4444556778888999999999984 2 246677777642 24578899999999998665533
Q ss_pred HHHHHcCChHHHHHhhc--cCChHHHHHHHHHHHHHhcCChhhHHHHHhcCChHHHHHHhcC-CCHHHHHHHHHHHHHhh
Q 005044 285 KEVLAAGALQPVIGLLS--SCCSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQS-PDVQLREMSAFALGRLA 361 (717)
Q Consensus 285 ~~~~~~g~l~~L~~ll~--~~~~~~~~~a~~~L~~l~~~~~~~~~~l~~~~~l~~L~~~l~~-~~~~v~~~a~~~L~~l~ 361 (717)
+-+.+++++. ..++++|..|+..|..- +|.. ..+..+...+.. ++.+|.......|.+++
T Consensus 513 -------v~~il~~i~~n~~e~~EvRiaA~~~Lm~t---~P~~-------~~l~~ia~~l~~E~~~QV~sfv~S~l~sla 575 (1056)
T 1lsh_A 513 -------VQEIVLPIFLNVAIKSELRIRSCIVFFES---KPSV-------ALVSMVAVRLRREPNLQVASFVYSQMRSLS 575 (1056)
T ss_dssp -------HHHHHHHHHHCTTSCHHHHHHHHHHHHHT---CCCH-------HHHHHHHHHHTTCSCHHHHHHHHHHHHHHT
T ss_pred -------HHHHHHHHhcCCCCChHHHHHHHHHHHHH---CcCH-------HHHHHHHHHHhhCchHHHHHHHHHHHHHHH
Confidence 2345777774 45688998888877653 2322 134566677765 78999999999999999
Q ss_pred cCCCC
Q 005044 362 QDMHN 366 (717)
Q Consensus 362 ~~~~~ 366 (717)
.....
T Consensus 576 ~s~~P 580 (1056)
T 1lsh_A 576 RSSNP 580 (1056)
T ss_dssp TCCSG
T ss_pred hcCCc
Confidence 86544
No 159
>3eg5_B Protein diaphanous homolog 1; protein-protein complex, RHO proteins, formins, armadillo repeat, G-protein, GTPase, alternative splicing; HET: GNP; 2.70A {Mus musculus} SCOP: a.118.1.23 PDB: 1z2c_B*
Probab=91.48 E-value=0.9 Score=45.76 Aligned_cols=159 Identities=13% Similarity=0.130 Sum_probs=99.6
Q ss_pred hhHHHHHhcCChHHHHHHhc-----------CCCHHHHHHHHHHHHHhhcCCCCchhhHhc-CChHHHHHhhcCCChhHH
Q 005044 324 DCKVHIVQRGAVRPLIEMLQ-----------SPDVQLREMSAFALGRLAQDMHNQAGIAHN-GGLVPLLKLLDSKNGSLQ 391 (717)
Q Consensus 324 ~~~~~l~~~~~l~~L~~~l~-----------~~~~~v~~~a~~~L~~l~~~~~~~~~l~~~-~~l~~L~~ll~~~~~~v~ 391 (717)
.....+. .+++..|+.+|. ..+......++.||..+..+..+...+... ..+..|...+.+.++.++
T Consensus 101 sWV~~F~-~~Gl~~Ll~iL~~~~~~~~~~~~~~d~~~q~~~l~CLkalmN~~~G~~~vl~~~~~i~~l~~~L~s~~~~~~ 179 (383)
T 3eg5_B 101 SWVQTFG-AEGLASLLDILKRLHDEKEETSGNYDSRNQHEIIRCLKAFMNNKFGIKTMLETEEGILLLVRAMDPAVPNMM 179 (383)
T ss_dssp HHHHHHH-HHHHHHHHHHHHHHHTCC-------CHHHHHHHHHHHHHHTSSHHHHHHHHTCSSHHHHHHHTCCTTSHHHH
T ss_pred HHHHHHH-HccHHHHHHHHHHHhhccccccchhhHHHHHHHHHHHHHHhcchhhHHHHHcChHHHHHHHHHhCCCchHHH
Confidence 3334444 445666666663 124577788999999998766555555544 567888999999999999
Q ss_pred HHHHHHHHhccCCCc--c-hHHHHHhcCccccccchhHHhhhHHHHHHHHHHHHHHhhhchHHHHHHHHhh-cchhHHHH
Q 005044 392 HNAAFALYGLADNED--N-VADFIRVGGVQKLQDGEFIVQATKDCVAKTLKRLEEKIHGRVLNHLLYLMRV-AEKGVQRR 467 (717)
Q Consensus 392 ~~a~~~L~~l~~~~~--~-~~~l~~~~~i~~L~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~L~~ll~~-~~~~v~~~ 467 (717)
..++..|..+|..++ + ...+.+ ++.......+..-+..++..+.. .+.+.+..
T Consensus 180 ~~aleLL~~lc~~~~~~gG~~~VL~-----------------------Al~~~~~~~e~~RF~~lv~~L~~~~~~e~~~~ 236 (383)
T 3eg5_B 180 IDAAKLLSALCILPQPEDMNERVLE-----------------------AMTERAEMDEVERFQPLLDGLKSGTSIALKVG 236 (383)
T ss_dssp HHHHHHHHHHHTCCSSTTHHHHHHH-----------------------HHHHHHHHHTSCTTHHHHHTTSTTSCHHHHHH
T ss_pred HHHHHHHHHHHhCcCcCCcHHHHHH-----------------------HHHHHHHhCCCCcHHHHHHHHHccCcHHHHHH
Confidence 999999998887553 2 333322 12222222344456677777776 46788888
Q ss_pred HHHHHHhccCCCC-------CceeeecCCCHHHHHHHhcCCCchhh
Q 005044 468 VALALAHLCSPDD-------QRTIFIDGGGLELLLGLLGSTNPKQQ 506 (717)
Q Consensus 468 a~~aL~~l~~~~~-------~~~~~~~~~~l~~L~~ll~~~~~~v~ 506 (717)
+...+..+..+.+ -+..+...|..+.+.++-...++.+.
T Consensus 237 ~m~lIN~li~~~~dl~~R~~lR~ef~~~Gl~~il~~lr~~~~~~L~ 282 (383)
T 3eg5_B 237 CLQLINALITPAEELDFRVHIRSELMRLGLHQVLQELREIENEDMK 282 (383)
T ss_dssp HHHHHHHHHTTCCCHHHHHHHHHHHHHTTHHHHHHHHTTSCCHHHH
T ss_pred HHHHHHHHHcCCCCHHHHHHHHHHHHHCChHHHHHHHhcCCChhHH
Confidence 8888877766544 23344455655666654444554443
No 160
>2f31_A Diaphanous protein homolog 1; formin,MDIA1, protein-protein complex, armadillo repeats, structural protein; 2.10A {Mus musculus}
Probab=91.42 E-value=0.8 Score=42.57 Aligned_cols=139 Identities=14% Similarity=0.128 Sum_probs=88.5
Q ss_pred CHHHHHHHHHHHHHhhcCCCCchhhHhc-CChHHHHHhhcCCChhHHHHHHHHHHhccCCCc--c-hHHHHHhcCccccc
Q 005044 346 DVQLREMSAFALGRLAQDMHNQAGIAHN-GGLVPLLKLLDSKNGSLQHNAAFALYGLADNED--N-VADFIRVGGVQKLQ 421 (717)
Q Consensus 346 ~~~v~~~a~~~L~~l~~~~~~~~~l~~~-~~l~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~--~-~~~l~~~~~i~~L~ 421 (717)
+......++.||..+..+..+...+... +.+..+...+.+.+..++..++..|..++..++ + ...+.++
T Consensus 67 ~~~~~~~~l~CLkalmn~~~G~~~vl~~~~~i~~l~~~L~s~~~~~r~~~leLL~~lc~~~~~~G~~~~VL~A------- 139 (233)
T 2f31_A 67 DSRNQHEIIRCLKAFMNNKFGIKTMLETEEGILLLVRAMDPAVPNMMIDAAKLLSALCILPQPEDMNERVLEA------- 139 (233)
T ss_dssp HHHHHHHHHHHHHHHTSSHHHHHHHHTSSSHHHHHHTTCCTTSHHHHHHHHHHHHHHHTCSSSSCHHHHHHHH-------
T ss_pred hHHHHHHHHHHHHHHhCChHHHHHHHcCcHHHHHHHHHhCCCCchHHHHHHHHHHHHHhCCCCCChHHHHHHH-------
Confidence 4566778899999998766555555544 567778888899999999999999988877553 3 3333321
Q ss_pred cchhHHhhhHHHHHHHHHHHHHHhhhchHHHHHHHHhh-cchhHHHHHHHHHHhccCCCC-------CceeeecCCCHHH
Q 005044 422 DGEFIVQATKDCVAKTLKRLEEKIHGRVLNHLLYLMRV-AEKGVQRRVALALAHLCSPDD-------QRTIFIDGGGLEL 493 (717)
Q Consensus 422 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~L~~ll~~-~~~~v~~~a~~aL~~l~~~~~-------~~~~~~~~~~l~~ 493 (717)
+.......+..-+..+++.+.. .+.+.+..++..+..+..+++ -+..+...|..+.
T Consensus 140 ----------------l~~~~~~~e~~RF~~lv~~l~~~~~~e~~~~~m~lIN~li~~~~dl~~R~~lR~ef~~~Gl~~i 203 (233)
T 2f31_A 140 ----------------MTERAEMDEVERFQPLLDGLKSGTSIALKVGCLQLINALITPAEELDFRVHIRSELMRLGLHQV 203 (233)
T ss_dssp ----------------HHHHHHHHTSCTTHHHHHTTSTTSCHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHTTHHHH
T ss_pred ----------------HHHHHHhCCcchHHHHHHHHhcCChHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCChHHH
Confidence 1111111233455566666663 466788888888877766654 2334455566666
Q ss_pred HHHHhcCCCchhhh
Q 005044 494 LLGLLGSTNPKQQL 507 (717)
Q Consensus 494 L~~ll~~~~~~v~~ 507 (717)
+..+-...++++..
T Consensus 204 l~~l~~~~~~~L~~ 217 (233)
T 2f31_A 204 LQELREIENEDMKV 217 (233)
T ss_dssp HHHHHHCCCHHHHH
T ss_pred HHHHhccCCHHHHH
Confidence 66665556655543
No 161
>1t1d_A Protein (potassium channel KV1.1); potassium channels, tetramerization domain, aplysia KV1.1, proton transport, membrane protein; 1.51A {Aplysia californica} SCOP: d.42.1.2 PDB: 1eod_A 1eof_A 1eoe_A 1a68_A 1qdv_A 1exb_E* 1qdw_A 1dsx_A
Probab=91.08 E-value=0.1 Score=40.89 Aligned_cols=84 Identities=15% Similarity=0.141 Sum_probs=58.9
Q ss_pred EEEEEcCeEeehhHHHHhhccH-HHHHhhcC-CCCCCCCcceEcCCCCHHHHHHHHHHHhc-Cccccchh-hHHHHHHHH
Q 005044 552 VTFLVEGRRFYAHRICLLASSD-AFRAMFDG-GYREKDARDIEIPNIRWEVFELMMRFIYT-GSVDVTLD-IAQDLLRAA 627 (717)
Q Consensus 552 v~~~~~~~~~~~h~~il~~~s~-~f~~~~~~-~~~e~~~~~i~l~~~~~~~~~~~l~~~Yt-~~~~~~~~-~~~~ll~~A 627 (717)
|.+.|+|..|...+..|..... .+.+|+.. .......+.+.+ |=++..|+.+|+|+-+ |++.++.. .+..+..-|
T Consensus 3 v~LNVGG~~f~t~~~TL~~~p~s~L~~~~~~~~~~~~~~~eyFi-DRdp~~F~~ILnflR~~G~l~~p~~~~~~~~~~Ea 81 (100)
T 1t1d_A 3 VVINVSGLRFETQLKTLNQFPDTLLGNPQKRNRYYDPLRNEYFF-DRNRPSFDAILYFYQSGGRLRRPVNVPLDVFSEEI 81 (100)
T ss_dssp EEEEETTEEEEEEHHHHHTSTTSTTTCHHHHGGGEETTTTEEEE-CSCSTTHHHHHHHHHTTSCCCCCTTSCHHHHHHHH
T ss_pred EEEEECCEEEEeeHHHHhcCCCccccchhccccccCCCceeEEE-cCChHHHHHHHHHHhcCCcccCCCCCCHHHHHHHH
Confidence 6788999999999999975432 22222221 011122345555 6789999999999998 89876544 467899999
Q ss_pred HhhChHhHH
Q 005044 628 DQYLLEGLK 636 (717)
Q Consensus 628 ~~~~~~~l~ 636 (717)
++|+++.+.
T Consensus 82 ~fy~i~~~~ 90 (100)
T 1t1d_A 82 KFYELGENA 90 (100)
T ss_dssp HHTTCCHHH
T ss_pred HHcCCCHHH
Confidence 999997754
No 162
>3eg5_B Protein diaphanous homolog 1; protein-protein complex, RHO proteins, formins, armadillo repeat, G-protein, GTPase, alternative splicing; HET: GNP; 2.70A {Mus musculus} SCOP: a.118.1.23 PDB: 1z2c_B*
Probab=90.88 E-value=4.8 Score=40.40 Aligned_cols=161 Identities=20% Similarity=0.239 Sum_probs=102.2
Q ss_pred hhhHHHHHhCCChHHHHHHHhccccCCC---ccchhHHHHHHHHHHHHHhhcCchhhhHHHhcCCcHHHHHhhcCCCHHH
Q 005044 147 PEHQQLIVDNGALSHLVNLLKRHMDSNC---SRAVNSVIRRAADAITNLAHENSSIKTRVRMEGGIPPLVELLEFTDTKV 223 (717)
Q Consensus 147 ~~~~~~~~~~~~i~~L~~lL~~~~~~~~---~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v 223 (717)
......+. .+|+..|+.+|..-..... ..........++.||..+..........+.....+..|...+.++++.+
T Consensus 100 ~sWV~~F~-~~Gl~~Ll~iL~~~~~~~~~~~~~~d~~~q~~~l~CLkalmN~~~G~~~vl~~~~~i~~l~~~L~s~~~~~ 178 (383)
T 3eg5_B 100 VSWVQTFG-AEGLASLLDILKRLHDEKEETSGNYDSRNQHEIIRCLKAFMNNKFGIKTMLETEEGILLLVRAMDPAVPNM 178 (383)
T ss_dssp HHHHHHHH-HHHHHHHHHHHHHHHTCC-------CHHHHHHHHHHHHHHTSSHHHHHHHHTCSSHHHHHHHTCCTTSHHH
T ss_pred cHHHHHHH-HccHHHHHHHHHHHhhccccccchhhHHHHHHHHHHHHHHhcchhhHHHHHcChHHHHHHHHHhCCCchHH
Confidence 34444555 5678999999865321110 0112267788899999988744455555555677899999999999999
Q ss_pred HHHHHHHHHHhhccCh-hh-HHHHH----------hcCCHHHHHHHHcC-CCHHHHHHHHHHHHHhhcCChH------HH
Q 005044 224 QRAAAGALRTLAFKND-EN-KNQIV----------ECNALPTLILMLRS-EDSAIHYEAVGVIGNLVHSSPN------IK 284 (717)
Q Consensus 224 ~~~a~~~L~~L~~~~~-~~-~~~~~----------~~g~i~~L~~ll~~-~~~~v~~~a~~~L~~l~~~~~~------~~ 284 (717)
+..++..|..+|.-.. .+ ...+. +..-+..++..+++ .+.+.+..+...|-.+..+.++ .+
T Consensus 179 ~~~aleLL~~lc~~~~~~gG~~~VL~Al~~~~~~~e~~RF~~lv~~L~~~~~~e~~~~~m~lIN~li~~~~dl~~R~~lR 258 (383)
T 3eg5_B 179 MIDAAKLLSALCILPQPEDMNERVLEAMTERAEMDEVERFQPLLDGLKSGTSIALKVGCLQLINALITPAEELDFRVHIR 258 (383)
T ss_dssp HHHHHHHHHHHHTCCSSTTHHHHHHHHHHHHHHHHTSCTTHHHHHTTSTTSCHHHHHHHHHHHHHHHTTCCCHHHHHHHH
T ss_pred HHHHHHHHHHHHhCcCcCCcHHHHHHHHHHHHHhCCCCcHHHHHHHHHccCcHHHHHHHHHHHHHHHcCCCCHHHHHHHH
Confidence 9999999999987442 22 33322 23446778888876 5667777777777777655432 23
Q ss_pred HHHHHcCChHHHHHhhcc-CChHHHH
Q 005044 285 KEVLAAGALQPVIGLLSS-CCSESQR 309 (717)
Q Consensus 285 ~~~~~~g~l~~L~~ll~~-~~~~~~~ 309 (717)
..+...|+.+.+-. ++. .++++..
T Consensus 259 ~ef~~~Gl~~il~~-lr~~~~~~L~~ 283 (383)
T 3eg5_B 259 SELMRLGLHQVLQE-LREIENEDMKV 283 (383)
T ss_dssp HHHHHTTHHHHHHH-HTTSCCHHHHH
T ss_pred HHHHHCChHHHHHH-HhcCCChhHHH
Confidence 44455666665555 444 3454443
No 163
>3u0r_A Apoptosis inhibitor 5; heat repeat, armadillo repeat, lysine acetylation; 2.50A {Homo sapiens} PDB: 3v6a_A
Probab=90.73 E-value=5.5 Score=40.52 Aligned_cols=118 Identities=19% Similarity=0.159 Sum_probs=87.5
Q ss_pred HHHHHHHHHHHHHhhcCchhhhHHHhcCCcHHHHHhhcCCCHHHHHHHHHHHHHhhccChhhHHHHHhcCCHHHHHHHHc
Q 005044 180 SVIRRAADAITNLAHENSSIKTRVRMEGGIPPLVELLEFTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLR 259 (717)
Q Consensus 180 ~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~g~i~~L~~ll~ 259 (717)
...+.|+..+......-|+.... .+..++.++.+.+..+|..|.+.|..+|.+ ++... +...|+++|.
T Consensus 43 k~K~LaaQ~I~kffk~FP~l~~~-----Ai~a~lDLcEDed~~IR~qaik~Lp~~ck~--~~i~k-----iaDvL~QlLq 110 (507)
T 3u0r_A 43 KEKRLAAQFIPKFFKHFPELADS-----AINAQLDLCEDEDVSIRRQAIKELPQFATG--ENLPR-----VADILTQLLQ 110 (507)
T ss_dssp HHHHHHHHHHHHHGGGCGGGHHH-----HHHHHHHHHTCSSHHHHHHHHHHGGGGCCT--TCHHH-----HHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHhhChhhHHH-----HHHHHHHHHhcccHHHHHHHHHhhHHHhhh--hhhhh-----HHHHHHHHHh
Confidence 78899999999999888887655 457899999999999999999999999974 44333 4577999999
Q ss_pred CCCHHHHHHHHHHHHHhhcCChHHHHHHHHcCChHHHHHhhccCChHHHHHHHHHHHH
Q 005044 260 SEDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLSSCCSESQREAALLLGQ 317 (717)
Q Consensus 260 ~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~l~~L~~ll~~~~~~~~~~a~~~L~~ 317 (717)
.+++.-....-.+|..+...++.. .+..+..-+..+++.+|+.+...|..
T Consensus 111 tdd~~E~~~V~~sL~sllk~Dpk~--------tl~~lf~~i~~~~e~~Rer~lkFi~~ 160 (507)
T 3u0r_A 111 TDDSAEFNLVNNALLSIFKMDAKG--------TLGGLFSQILQGEDIVRERAIKFLST 160 (507)
T ss_dssp CCCHHHHHHHHHHHHHHHHHCHHH--------HHHHHHHHHHHSCHHHHHHHHHHHHH
T ss_pred ccchHHHHHHHHHHHHHHhcChHH--------HHHHHHHHHcccchHHHHHHHHHHHH
Confidence 988877777777777776555432 23334444444567777776666643
No 164
>2bnx_A Diaphanous protein homolog 1; autoinhibition, actin, nucleation, cytoskeleton, structural; 2.4A {Mus musculus} SCOP: a.118.1.23 PDB: 3o4x_A 3obv_A* 2bap_B
Probab=89.51 E-value=5.3 Score=40.18 Aligned_cols=155 Identities=19% Similarity=0.250 Sum_probs=97.8
Q ss_pred CCChHHHHHHHhccccCCCc---cchhHHHHHHHHHHHHHhhcCchhhhHHHhcCCcHHHHHhhcCCCHHHHHHHHHHHH
Q 005044 156 NGALSHLVNLLKRHMDSNCS---RAVNSVIRRAADAITNLAHENSSIKTRVRMEGGIPPLVELLEFTDTKVQRAAAGALR 232 (717)
Q Consensus 156 ~~~i~~L~~lL~~~~~~~~~---~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~ 232 (717)
.+|+..|+.+|......... .........++.||..++.........+...+++..+...+.++++.++..++..|.
T Consensus 46 ~~Gl~~Ll~~L~~~~~~~~~~~~~~d~~~~~~~l~CLkalmN~~~Gl~~vl~~~~~i~~l~~sL~s~~~~~r~~vleLL~ 125 (386)
T 2bnx_A 46 AEGLASLLDILKRLHDEKEETSGNYDSRNQHEIIRCLKAFMNNKFGIKTMLETEEGILLLVRAMDPAVPNMMIDAAKLLS 125 (386)
T ss_dssp HHHHHHHHHHHHHHHTCCTTTCCTTHHHHHHHHHHHHHHHTSSHHHHHHHHHSSSHHHHHHHTCCTTSHHHHHHHHHHHH
T ss_pred HhHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHhCCHHHHHHHHcCcHHHHHHHHHhCCCCchHHHHHHHHHH
Confidence 46677788777654221110 112367788999999988755555555555677888999998899999999999999
Q ss_pred HhhccCh-hh-HHHHH----------hcCCHHHHHHHHc-CCCHHHHHHHHHHHHHhhcCChH------HHHHHHHcCCh
Q 005044 233 TLAFKND-EN-KNQIV----------ECNALPTLILMLR-SEDSAIHYEAVGVIGNLVHSSPN------IKKEVLAAGAL 293 (717)
Q Consensus 233 ~L~~~~~-~~-~~~~~----------~~g~i~~L~~ll~-~~~~~v~~~a~~~L~~l~~~~~~------~~~~~~~~g~l 293 (717)
.+|.... .. ...+. +..-+..++..+. +.+.+.+..++..|-.+..+.++ .+..+...|+.
T Consensus 126 alc~~~~~~G~~~~VL~Al~~~~~~~e~~RF~~lv~~l~~~~~~e~~~a~m~lIN~lv~~~~dl~~R~~LR~Ef~~~GL~ 205 (386)
T 2bnx_A 126 ALCILPQPEDMNERVLEAMTERAEMDEVERFQPLLDGLKSGTSIALKVGCLQLINALITPAEELDFRVHIRSELMRLGLH 205 (386)
T ss_dssp HHHTCCSSTTHHHHHHHHHHHHHHHHTSCTTHHHHHHTSTTSCHHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHTTHH
T ss_pred HHHcCCCCCChHHHHHHHHHHHHHhCchhhHHHHHHHHHcCChHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCChH
Confidence 8887433 22 23222 2234556777776 45667777777777777655443 34455556666
Q ss_pred HHHHHhhccCChHHHHH
Q 005044 294 QPVIGLLSSCCSESQRE 310 (717)
Q Consensus 294 ~~L~~ll~~~~~~~~~~ 310 (717)
+.+-.+-...++.+..+
T Consensus 206 ~il~~Lr~~~~~~L~~Q 222 (386)
T 2bnx_A 206 QVLQELREIENEDMKVQ 222 (386)
T ss_dssp HHHHHHTTCCCHHHHHH
T ss_pred HHHHHHhccCChhHHHH
Confidence 66554444455555444
No 165
>2bnx_A Diaphanous protein homolog 1; autoinhibition, actin, nucleation, cytoskeleton, structural; 2.4A {Mus musculus} SCOP: a.118.1.23 PDB: 3o4x_A 3obv_A* 2bap_B
Probab=86.93 E-value=3.3 Score=41.69 Aligned_cols=140 Identities=14% Similarity=0.125 Sum_probs=89.0
Q ss_pred CHHHHHHHHHHHHHhhcCCCCchhhHhc-CChHHHHHhhcCCChhHHHHHHHHHHhccCCCc--c-hHHHHHhcCccccc
Q 005044 346 DVQLREMSAFALGRLAQDMHNQAGIAHN-GGLVPLLKLLDSKNGSLQHNAAFALYGLADNED--N-VADFIRVGGVQKLQ 421 (717)
Q Consensus 346 ~~~v~~~a~~~L~~l~~~~~~~~~l~~~-~~l~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~--~-~~~l~~~~~i~~L~ 421 (717)
+......++.||..+..+..+...+... +++..+...+.+.++.++..++..|..+|..++ + ...+.+
T Consensus 71 d~~~~~~~l~CLkalmN~~~Gl~~vl~~~~~i~~l~~sL~s~~~~~r~~vleLL~alc~~~~~~G~~~~VL~-------- 142 (386)
T 2bnx_A 71 DSRNQHEIIRCLKAFMNNKFGIKTMLETEEGILLLVRAMDPAVPNMMIDAAKLLSALCILPQPEDMNERVLE-------- 142 (386)
T ss_dssp HHHHHHHHHHHHHHHTSSHHHHHHHHHSSSHHHHHHHTCCTTSHHHHHHHHHHHHHHHTCCSSTTHHHHHHH--------
T ss_pred hHHHHHHHHHHHHHHhCCHHHHHHHHcCcHHHHHHHHHhCCCCchHHHHHHHHHHHHHcCCCCCChHHHHHH--------
Confidence 4567778899999998766555555444 567778888999999999999998888877543 2 222222
Q ss_pred cchhHHhhhHHHHHHHHHHHHHHhhhchHHHHHHHHh-hcchhHHHHHHHHHHhccCCCC-------CceeeecCCCHHH
Q 005044 422 DGEFIVQATKDCVAKTLKRLEEKIHGRVLNHLLYLMR-VAEKGVQRRVALALAHLCSPDD-------QRTIFIDGGGLEL 493 (717)
Q Consensus 422 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~L~~ll~-~~~~~v~~~a~~aL~~l~~~~~-------~~~~~~~~~~l~~ 493 (717)
++.......+..-+..+++.+. ..+.+.+..++..+..+..+.+ -+..+...|..+.
T Consensus 143 ---------------Al~~~~~~~e~~RF~~lv~~l~~~~~~e~~~a~m~lIN~lv~~~~dl~~R~~LR~Ef~~~GL~~i 207 (386)
T 2bnx_A 143 ---------------AMTERAEMDEVERFQPLLDGLKSGTSIALKVGCLQLINALITPAEELDFRVHIRSELMRLGLHQV 207 (386)
T ss_dssp ---------------HHHHHHHHHTSCTTHHHHHHTSTTSCHHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHTTHHHH
T ss_pred ---------------HHHHHHHhCchhhHHHHHHHHHcCChHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCChHHH
Confidence 1111112223345566777766 4466788888888877766654 2335555666666
Q ss_pred HHHHhcCCCchhhhh
Q 005044 494 LLGLLGSTNPKQQLD 508 (717)
Q Consensus 494 L~~ll~~~~~~v~~~ 508 (717)
|-.+-...++.+...
T Consensus 208 l~~Lr~~~~~~L~~Q 222 (386)
T 2bnx_A 208 LQELREIENEDMKVQ 222 (386)
T ss_dssp HHHHTTCCCHHHHHH
T ss_pred HHHHhccCChhHHHH
Confidence 666555566655433
No 166
>3qml_C Protein SLS1, nucleotide exchange factor SIL1; armadillo like repeats, chaperone-protein transport complex; 2.31A {Saccharomyces cerevisiae}
Probab=85.39 E-value=17 Score=34.58 Aligned_cols=164 Identities=15% Similarity=0.107 Sum_probs=101.7
Q ss_pred HHHHHHHHhhhhhccccchHHHHHHHHHHHHHHHHhhcChhhHHHHHhCCChHHHHHhhcCCCCCccccCCCccchHHHh
Q 005044 55 LLSEVSAQVNVLNTTFSWLEADRAAAKRATHVLAELAKNEEVVNWIVEGGAVPALVKHLQAPPTSEADRNLKPFEHEVEK 134 (717)
Q Consensus 55 ~~~~i~~l~~~L~~~~~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~g~i~~L~~lL~~~~~~~~~~~~~~~~~~v~~ 134 (717)
+...-..+..++.+.-....++......|+..|-.++.+-.+-..+.... .+.|-.++..... ++.+++
T Consensus 20 Fs~~F~~~r~ll~sg~~~~~~D~~~le~aLD~L~ElSHDi~~G~KI~~~e-f~lL~nL~~~~~~----------~~~~rE 88 (315)
T 3qml_C 20 FSSDFKEMRNIIDSNPTLSSQDIARLEDSFDRIMEFAHDYKHGYKIITHE-FALLANLSLNENL----------PLTLRE 88 (315)
T ss_dssp THHHHHHHHHHHHHCSSCCHHHHHHHHHHHHHHGGGTTSHHHHHHHHHHH-HHHHHHHHHCTTS----------CHHHHH
T ss_pred hHHHHHHHHHHHHcCCCCCcccHHHHHHHHHHHHHhhhhHHhhhHHHhCc-HHHHHHHHhhccC----------ChhHHH
Confidence 34444555666665412223344458999999999999888877777643 4555555533322 238999
Q ss_pred HHHHHHHHhc-CChhhHHHHHhC--CChHHHHHHHhccccCCCccchhHHHHHHHHHHHHHhhcCchhhhHHHhcCCcHH
Q 005044 135 GSAFALGLLA-VKPEHQQLIVDN--GALSHLVNLLKRHMDSNCSRAVNSVIRRAADAITNLAHENSSIKTRVRMEGGIPP 211 (717)
Q Consensus 135 ~a~~~L~~l~-~~~~~~~~~~~~--~~i~~L~~lL~~~~~~~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~ 211 (717)
.|.++++.-. .+|...+.+... ..+..++.-|.......... ...++..-+.+|..|...... + ...++..
T Consensus 89 ~aarII~ssLRNNP~Al~~V~~~~p~fv~~lf~~L~~~~~~~~~~-~~~l~KR~LsII~~L~~~~~~----F-~~~~m~~ 162 (315)
T 3qml_C 89 LSTRVITSCLRNNPPVVEFINESFPNFKSKIMAALSNLNDSNHRS-SNILIKRYLSILNELPVTSED----L-PIYSTVV 162 (315)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHCTTHHHHHHHHHHHHHCC--CC-CHHHHHHHHHHHHHSCCCSTT----C---CCHHH
T ss_pred HHHHHHHHHHccCHHHHHHHHHhChhHHHHHHHHHHHHhhcccch-hHHHHHHHHHHHHHHhcChHh----h-hhccHHH
Confidence 9999999988 899887766653 34444444443311110000 115667777888888774422 2 2446677
Q ss_pred HHHhhcCC--CHHHHHHHHHHHHHhh
Q 005044 212 LVELLEFT--DTKVQRAAAGALRTLA 235 (717)
Q Consensus 212 L~~ll~~~--~~~v~~~a~~~L~~L~ 235 (717)
|.+++... ++.++..++..+..+-
T Consensus 163 L~~ly~~~~~d~~~k~Kvl~li~d~f 188 (315)
T 3qml_C 163 LQNVYERNNKDKQLQIKVLELISKIL 188 (315)
T ss_dssp HHHHHHHTTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHccCCCCHHHHHHHHHHHHHHc
Confidence 88777666 8888888887776664
No 167
>3qml_C Protein SLS1, nucleotide exchange factor SIL1; armadillo like repeats, chaperone-protein transport complex; 2.31A {Saccharomyces cerevisiae}
Probab=84.30 E-value=11 Score=35.82 Aligned_cols=135 Identities=10% Similarity=0.036 Sum_probs=86.7
Q ss_pred CHHHHHHHHHHHHHhhcCChHHHHHHHHcCChHHHHHhh--ccCChHHHHHHHHHHHHHhcCChhhHHHHHh--cCChHH
Q 005044 262 DSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLL--SSCCSESQREAALLLGQFAATDSDCKVHIVQ--RGAVRP 337 (717)
Q Consensus 262 ~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~l~~L~~ll--~~~~~~~~~~a~~~L~~l~~~~~~~~~~l~~--~~~l~~ 337 (717)
+.+....|+..|..++.. -...-.+++.. ...|..++ ....+.+++.++.+|+....++|.....+.+ ..++..
T Consensus 41 D~~~le~aLD~L~ElSHD-i~~G~KI~~~e-f~lL~nL~~~~~~~~~~rE~aarII~ssLRNNP~Al~~V~~~~p~fv~~ 118 (315)
T 3qml_C 41 DIARLEDSFDRIMEFAHD-YKHGYKIITHE-FALLANLSLNENLPLTLRELSTRVITSCLRNNPPVVEFINESFPNFKSK 118 (315)
T ss_dssp HHHHHHHHHHHHGGGTTS-HHHHHHHHHHH-HHHHHHHHHCTTSCHHHHHHHHHHHHHHHTTCHHHHHHHHHHCTTHHHH
T ss_pred cHHHHHHHHHHHHHhhhh-HHhhhHHHhCc-HHHHHHHHhhccCChhHHHHHHHHHHHHHccCHHHHHHHHHhChhHHHH
Confidence 334567777778777644 33334444321 33333333 3345678999999999988899888776665 344555
Q ss_pred HHHHhcC-------CCHHHHHHHHHHHHHhhcCCCCchhhHhcCChHHHHHhhcCC--ChhHHHHHHHHHHhcc
Q 005044 338 LIEMLQS-------PDVQLREMSAFALGRLAQDMHNQAGIAHNGGLVPLLKLLDSK--NGSLQHNAAFALYGLA 402 (717)
Q Consensus 338 L~~~l~~-------~~~~v~~~a~~~L~~l~~~~~~~~~l~~~~~l~~L~~ll~~~--~~~v~~~a~~~L~~l~ 402 (717)
++..|.. ....+...-+.+|..|..++. .+ ...++..|.+++... +..++..++..+..+-
T Consensus 119 lf~~L~~~~~~~~~~~~~l~KR~LsII~~L~~~~~---~F-~~~~m~~L~~ly~~~~~d~~~k~Kvl~li~d~f 188 (315)
T 3qml_C 119 IMAALSNLNDSNHRSSNILIKRYLSILNELPVTSE---DL-PIYSTVVLQNVYERNNKDKQLQIKVLELISKIL 188 (315)
T ss_dssp HHHHHHHHHCC--CCCHHHHHHHHHHHHHSCCCST---TC---CCHHHHHHHHHHTTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhcccchhHHHHHHHHHHHHHHhcChH---hh-hhccHHHHHHHHccCCCCHHHHHHHHHHHHHHc
Confidence 5444422 244677778888888888752 12 245677788887666 8889999888887765
No 168
>3a6p_A Exportin-5; exportin-5, RANGTP, nuclearexport, importin-BE family, nucleus, phosphoprotein, protein transport; HET: GTP; 2.92A {Homo sapiens}
Probab=81.31 E-value=22 Score=42.07 Aligned_cols=223 Identities=14% Similarity=0.090 Sum_probs=121.8
Q ss_pred CCHHHHHHHHHHHHHhhcCChHHHHHHHHcCChHHHHHhh--ccCChHHHHHHHHHHHHHhcC-----ChhhHHHHHhcC
Q 005044 261 EDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLL--SSCCSESQREAALLLGQFAAT-----DSDCKVHIVQRG 333 (717)
Q Consensus 261 ~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~l~~L~~ll--~~~~~~~~~~a~~~L~~l~~~-----~~~~~~~l~~~~ 333 (717)
.+.+.+..|-..|..+-... .+...+...| .+.+..+|..|+.+|.+.... .++.+. .++..
T Consensus 25 ~~~~~r~~Ae~~L~~~~~~p----------~~~~~~~~~L~~~s~~~~vR~~A~~~Lk~~I~~~W~~l~~e~k~-~Ir~~ 93 (1204)
T 3a6p_A 25 STQRYRLEALKFCEEFKEKC----------PICVPCGLRLAEKTQVAIVRHFGLQILEHVVKFRWNGMSRLEKV-YLKNS 93 (1204)
T ss_dssp CCHHHHHHHHHHHHHHHHHC----------TTHHHHHHHHTSTTSCHHHHHHHHHHHHHHHHHSGGGSCHHHHH-HHHHH
T ss_pred CChHHHHHHHHHHHHHHhCc----------hHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHhcccCCHHHHH-HHHHH
Confidence 36678888888887763321 2333334333 344678899999989887532 222222 33333
Q ss_pred ChHHHHHHhcC---CCHHHHHHHHHHHHHhhcCCCCchhhHhcCChHHHHHhhcCCChhHHHHHHHHHHhccCCCcchHH
Q 005044 334 AVRPLIEMLQS---PDVQLREMSAFALGRLAQDMHNQAGIAHNGGLVPLLKLLDSKNGSLQHNAAFALYGLADNEDNVAD 410 (717)
Q Consensus 334 ~l~~L~~~l~~---~~~~v~~~a~~~L~~l~~~~~~~~~l~~~~~l~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~ 410 (717)
++..+...... .++.++...+.++..++...-.. . ..+.++.+++++.+ +......++.+|..|+...
T Consensus 94 ll~~l~~~~~~~~~~~~~vr~kla~~la~Ia~~d~p~-~--Wp~ll~~L~~~~~~-~~~~~e~~L~iL~~L~Eev----- 164 (1204)
T 3a6p_A 94 VMELIANGTLNILEEENHIKDALSRIVVEMIKREWPQ-H--WPDMLIELDTLSKQ-GETQTELVMFILLRLAEDV----- 164 (1204)
T ss_dssp HHHHHHHSSCCTTSSCHHHHHHHHHHHHHHHHHHSTT-T--CTTHHHHHHHHHHT-CHHHHHHHHHHHHHHHHHH-----
T ss_pred HHHHHHhhccccccccHHHHHHHHHHHHHHHHHhCcc-c--chHHHHHHHHHhcC-CHHHHHHHHHHHHHHHHHH-----
Confidence 44444433211 46789999999999988642111 1 23567778888866 4556777888888776310
Q ss_pred HHHhcCccccccchhHHhhhHHHHHHHHHHHHHHhhhchHHHHHHHHhh-------------------cchhHHHHHHHH
Q 005044 411 FIRVGGVQKLQDGEFIVQATKDCVAKTLKRLEEKIHGRVLNHLLYLMRV-------------------AEKGVQRRVALA 471 (717)
Q Consensus 411 l~~~~~i~~L~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~L~~ll~~-------------------~~~~v~~~a~~a 471 (717)
...+... . .........+... -..++..+..++.. ++..++..++.+
T Consensus 165 -~~~~~~~---~--~r~~~l~~~l~~~--------~~~I~~~~~~iL~~~~~~~~~~~~~~~~~~~~~~~~~l~~~aL~~ 230 (1204)
T 3a6p_A 165 -VTFQTLP---P--QRRRDIQQTLTQN--------MERIFSFLLNTLQENVNKYQQVKTDTSQESKAQANCRVGVAALNT 230 (1204)
T ss_dssp -HTSCCSC---H--HHHHHHHHHHHHT--------HHHHHHHHHHHHHHHHHHHHHHTTCSTTHHHHHHHHHHHHHHHHH
T ss_pred -ccccchH---H--HHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHhcccccccchhhhhhhHHHHHHHHHH
Confidence 0000000 0 0000000111100 01122222222221 345678888889
Q ss_pred HHhccCCCCCceeeec-CCCHHHHHHHhcCCCchhhhhhHHHHHHhhhc
Q 005044 472 LAHLCSPDDQRTIFID-GGGLELLLGLLGSTNPKQQLDGAVALFKLANK 519 (717)
Q Consensus 472 L~~l~~~~~~~~~~~~-~~~l~~L~~ll~~~~~~v~~~a~~~l~~L~~~ 519 (717)
+.+..........+.. ...++.+..++. +++++..|+.+|..+...
T Consensus 231 l~~~l~Wi~~~~i~~~~~~ll~~l~~~l~--~~~lr~~A~ecL~~i~s~ 277 (1204)
T 3a6p_A 231 LAGYIDWVSMSHITAENCKLLEILCLLLN--EQELQLGAAECLLIAVSR 277 (1204)
T ss_dssp HHTTTTTSCHHHHHTTTSHHHHHHHHGGG--CTTTHHHHHHHHHHHHTC
T ss_pred HHHHHhccCHHHHHhccchHHHHHHHHcC--CHHHHHHHHHHHHHHHhC
Confidence 9888766543222211 125666666655 578899999999999975
No 169
>2vkp_A BTB/POZ domain-containing protein 6; protein-binding; 1.9A {Homo sapiens}
Probab=79.22 E-value=2.2 Score=33.78 Aligned_cols=32 Identities=9% Similarity=0.294 Sum_probs=30.0
Q ss_pred CChhcHHHHHHHHHHcCcHHHHHHHHHHHHHh
Q 005044 647 ISLENVSSMYELSEAFHAISLRHTCILYIMEH 678 (717)
Q Consensus 647 i~~~n~~~~~~~a~~~~~~~L~~~~~~~i~~~ 678 (717)
++.+|+..++..|+.|+.+.|++.|.+|+.++
T Consensus 77 ~~~~~~~~ll~~A~~~~~~~L~~~c~~~l~~~ 108 (109)
T 2vkp_A 77 LEADTVLATLYAAKKYIVPALAKACVNFLETS 108 (109)
T ss_dssp CCTTTHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHhCcHHHHHHHHHHHHhh
Confidence 67789999999999999999999999999876
No 170
>2eqx_A Kelch repeat and BTB domain-containing protein 4; BACK domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=77.83 E-value=2.8 Score=33.08 Aligned_cols=36 Identities=14% Similarity=0.057 Sum_probs=32.1
Q ss_pred ccccchhhHHHHHHHHHhhChHhHHHHHHHHHHhcC
Q 005044 612 SVDVTLDIAQDLLRAADQYLLEGLKRLCEYTIAQDI 647 (717)
Q Consensus 612 ~~~~~~~~~~~ll~~A~~~~~~~l~~~c~~~l~~~i 647 (717)
.-.++++|...++.+|+.|+.+.|...|..|+.++.
T Consensus 5 ~~~L~~~NCl~i~~~A~~~~~~~L~~~a~~fi~~nF 40 (105)
T 2eqx_A 5 SSGVQVGNCLQVMWLADRHSDPELYTAAKHCAKTHL 40 (105)
T ss_dssp CCCCCTTTHHHHHHHHHHTTCHHHHHHHHHHHHHTC
T ss_pred hccCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Confidence 345789999999999999999999999999988764
No 171
>3gs3_A Symplekin, LD45768P; helix-turn-helix heat repeat extended loop, transcription, protein binding; 2.40A {Drosophila melanogaster}
Probab=73.80 E-value=58 Score=30.31 Aligned_cols=196 Identities=12% Similarity=0.098 Sum_probs=112.6
Q ss_pred HHHHHHHHhhhhhccccchHHHHHHHHHHHHHHHHhhc--ChhhHHHHHhCCChHHHHHhhcCCCCCccccCCCccchHH
Q 005044 55 LLSEVSAQVNVLNTTFSWLEADRAAAKRATHVLAELAK--NEEVVNWIVEGGAVPALVKHLQAPPTSEADRNLKPFEHEV 132 (717)
Q Consensus 55 ~~~~i~~l~~~L~~~~~~~~~~~~~~~~a~~~L~~l~~--~~~~~~~~~~~g~i~~L~~lL~~~~~~~~~~~~~~~~~~v 132 (717)
..+.-.++++.|.+.....+ + .+...+.-...++- +|..-.. .++.++++..+.+. ++
T Consensus 10 ~~~~~~~v~~lln~A~~~~~-~--~kl~~L~qa~el~~~~dp~ll~~-----~l~~il~~~~~~~~------------~v 69 (257)
T 3gs3_A 10 TATARAKVVDWCNELVIASP-S--TKCELLAKVQETVLGSCAELAEE-----FLESVLSLAHDSNM------------EV 69 (257)
T ss_dssp HHHHHHHHHHHHHHHTTCCH-H--HHHHHHHHHHHHHTTTTGGGHHH-----HHHHHHGGGGCSCH------------HH
T ss_pred cccHHHHHHHHHHHhhhcCc-H--HHHHHHHHHHHHHHccCHhHHHH-----HHHHHHHhccCChH------------HH
Confidence 44455566777776644343 2 47777888887655 4544433 36777776544433 99
Q ss_pred HhHHHHHHHHhc-CChhhHHHHHhCCChHHHHHHHhccccCCCccchhHHHHHHHHHHHHHhh-------cCch-----h
Q 005044 133 EKGSAFALGLLA-VKPEHQQLIVDNGALSHLVNLLKRHMDSNCSRAVNSVIRRAADAITNLAH-------ENSS-----I 199 (717)
Q Consensus 133 ~~~a~~~L~~l~-~~~~~~~~~~~~~~i~~L~~lL~~~~~~~~~~~~~~~~~~a~~~L~~l~~-------~~~~-----~ 199 (717)
|...+..+...+ ..++... ..++.|..++++.+. .+.+.++.+..++-. .++. .
T Consensus 70 rk~~~~Fi~e~~~~k~~l~~-----~~l~~L~~Ll~d~d~--------~V~K~~I~~~~~iY~~~l~~i~~~~~~~~~~~ 136 (257)
T 3gs3_A 70 RKQVVAFVEQVCKVKVELLP-----HVINVVSMLLRDNSA--------QVIKRVIQACGSIYKNGLQYLCSLMEPGDSAE 136 (257)
T ss_dssp HHHHHHHHHHHHHHCGGGHH-----HHHHHHHHHTTCSCH--------HHHHHHHHHHHHHHHHHHHHHTTSSSCCHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHcCCCH--------HHHHHHHHHHHHHHHHHHHHHhcCCCCcchHH
Confidence 999999999998 5555432 335677778875433 677766665544331 1221 1
Q ss_pred hhHHHhcCCcHHHHHhhcCCCHHHHHHHHHHHHHhhc----cChh--------------------hHHHHH--hcCCHHH
Q 005044 200 KTRVRMEGGIPPLVELLEFTDTKVQRAAAGALRTLAF----KNDE--------------------NKNQIV--ECNALPT 253 (717)
Q Consensus 200 ~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~L~~----~~~~--------------------~~~~~~--~~g~i~~ 253 (717)
..+-.-...-..++.+..+.+..++..+.+.+-.+.. .+.. +...+- ..+.+..
T Consensus 137 ~~W~~m~~lK~~Il~~~~s~n~gvkl~~iKF~e~vIl~qT~~~~~~~~~~~d~SL~~Vp~~Hp~l~~~~Le~Ea~~lL~~ 216 (257)
T 3gs3_A 137 QAWNILSLIKAQILDMIDNENDGIRTNAIKFLEGVVVLQSFADEDSLKRDGDFSLADVPDHCTLFRREKLQEEGNNILDI 216 (257)
T ss_dssp HHHHHHHHHHHHHHHGGGSSCHHHHHHHHHHHHHHHHHTSCCCTTSCCCTTCCCGGGSCSSCCSSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHccCCcchHHHHHHHHHHHHHhhcCCCcccCCCCCCCCHHHCCCCCCcCCHHHHHHHHHHHHHH
Confidence 1111111233456667778899999999988877651 1110 011111 1245666
Q ss_pred HHHHHcCC--CHHHHHHHHHHHHHhhcCChHH
Q 005044 254 LILMLRSE--DSAIHYEAVGVIGNLVHSSPNI 283 (717)
Q Consensus 254 L~~ll~~~--~~~v~~~a~~~L~~l~~~~~~~ 283 (717)
|+..+.++ +......++..|..++...+..
T Consensus 217 LL~~~~~~~iss~~l~a~lnsL~~Iak~RP~~ 248 (257)
T 3gs3_A 217 LLQFHGTTHISSVNLIACTSSLCTIAKMRPIF 248 (257)
T ss_dssp HHHHHTCTTCCHHHHHHHHHHHHHHHHHCGGG
T ss_pred HHHHHcCCccchHHHHHHHHHHHHHHHhCcHH
Confidence 66665543 3334556666666666655544
No 172
>3o2t_A Symplekin; heat repeat, scaffold, protein binding; 1.40A {Homo sapiens} PDB: 3odr_A 3ods_A 4h3k_A* 3o2s_A 3o2q_A* 4h3h_A*
Probab=69.91 E-value=91 Score=30.96 Aligned_cols=86 Identities=12% Similarity=0.166 Sum_probs=62.2
Q ss_pred HHHHHHHHHHHHhhc-CchhhhHHHhcCCcHHHHHhhcCCCHHHHHHHHHHHHHhhccChhhHHHHHhcCCHHHHHHHHc
Q 005044 181 VIRRAADAITNLAHE-NSSIKTRVRMEGGIPPLVELLEFTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLR 259 (717)
Q Consensus 181 ~~~~a~~~L~~l~~~-~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~g~i~~L~~ll~ 259 (717)
.+...+.-+..+... ++. .-.++++.++.+..+++.++|..++..|...+..+.+... .+++.|..+|+
T Consensus 41 ~Kl~~L~q~~EL~l~~dps-----Ll~~fl~~il~f~~d~~~~vRk~~a~FieEa~~~~~el~~-----~~l~~L~~LL~ 110 (386)
T 3o2t_A 41 SKITVLKQVQELIINKDPT-----LLDNFLDEIIAFQADKSIEVRKFVIGFIEEACKRDIELLL-----KLIANLNMLLR 110 (386)
T ss_dssp HHHHHHHHHHHHHHTTCGG-----GGGGGHHHHHGGGGCSCHHHHHHHHHHHHHHHHHCGGGHH-----HHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHhccCHH-----HHHHHHHHHHHhccCCcHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHc
Confidence 344455555555442 332 2246788999999999999999999999998875444422 24677888999
Q ss_pred CCCHHHHHHHHHHHHHh
Q 005044 260 SEDSAIHYEAVGVIGNL 276 (717)
Q Consensus 260 ~~~~~v~~~a~~~L~~l 276 (717)
++++.|...++.+..++
T Consensus 111 d~d~~V~K~~I~~~tsl 127 (386)
T 3o2t_A 111 DENVNVVKKAILTMTQL 127 (386)
T ss_dssp CSSHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHH
Confidence 99999988888887776
No 173
>1r29_A B-cell lymphoma 6 protein; BTB domain, transcriptional repression, transcription; 1.30A {Homo sapiens} SCOP: d.42.1.1 PDB: 1r28_A 1r2b_A 3bim_A 3lbz_A* 3e4u_A
Probab=66.71 E-value=5.5 Score=32.56 Aligned_cols=32 Identities=13% Similarity=0.204 Sum_probs=29.5
Q ss_pred CChhcHHHHHHHHHHcCcHHHHHHHHHHHHHh
Q 005044 647 ISLENVSSMYELSEAFHAISLRHTCILYIMEH 678 (717)
Q Consensus 647 i~~~n~~~~~~~a~~~~~~~L~~~~~~~i~~~ 678 (717)
++.+|+..++..|..|+.+.|++.|.+|+.++
T Consensus 95 ~~~~~~~~ll~~A~~~~i~~L~~~c~~~l~~~ 126 (127)
T 1r29_A 95 LREGNIMAVMATAMYLQMEHVVDTCRKFIKAS 126 (127)
T ss_dssp CCTTTHHHHHHHHHHTTCHHHHHHHHHHHHTC
T ss_pred cCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhc
Confidence 57789999999999999999999999999764
No 174
>2yy9_A Zinc finger and BTB domain-containing protein 48; mouse, HKR3, structural genomics, NPPSFA; 2.60A {Mus musculus}
Probab=64.79 E-value=2.9 Score=34.75 Aligned_cols=38 Identities=5% Similarity=0.023 Sum_probs=28.7
Q ss_pred CChhcHHHHHHHHHHcCcHHHHHHHHHHHHHhHHHhcC
Q 005044 647 ISLENVSSMYELSEAFHAISLRHTCILYIMEHFDKLST 684 (717)
Q Consensus 647 i~~~n~~~~~~~a~~~~~~~L~~~~~~~i~~~~~~~~~ 684 (717)
++.+|+..++..|+.|+.+.|++.|.+|+.+++..-..
T Consensus 87 i~~~~v~~ll~~A~~l~i~~L~~~C~~~l~~~l~~~~~ 124 (135)
T 2yy9_A 87 LTSGNRDQVLLAAKELRVPEAVELCQSFQPQTSVGQAQ 124 (135)
T ss_dssp CCTTTHHHHHHHHHHTTCHHHHHHHHHCCC--------
T ss_pred CCHHHHHHHHHHHHHhCcHHHHHHHHHHHHHhccCCCC
Confidence 67889999999999999999999999999988765433
No 175
>3o2t_A Symplekin; heat repeat, scaffold, protein binding; 1.40A {Homo sapiens} PDB: 3odr_A 3ods_A 4h3k_A* 3o2s_A 3o2q_A* 4h3h_A*
Probab=62.80 E-value=54 Score=32.60 Aligned_cols=128 Identities=16% Similarity=0.171 Sum_probs=83.9
Q ss_pred HHHHHHHHHHHhhc-CChHHHHHHHHcCChHHHHHhhccCChHHHHHHHHHHHHHhcCChhhHHHHHhcCChHHHHHHhc
Q 005044 265 IHYEAVGVIGNLVH-SSPNIKKEVLAAGALQPVIGLLSSCCSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQ 343 (717)
Q Consensus 265 v~~~a~~~L~~l~~-~~~~~~~~~~~~g~l~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~l~~~~~l~~L~~~l~ 343 (717)
.+...+.-+..+.. .++. .-..+++.++++-.+.+.++|+.++..|...+....+.. ..+++.|..++.
T Consensus 41 ~Kl~~L~q~~EL~l~~dps-----Ll~~fl~~il~f~~d~~~~vRk~~a~FieEa~~~~~el~-----~~~l~~L~~LL~ 110 (386)
T 3o2t_A 41 SKITVLKQVQELIINKDPT-----LLDNFLDEIIAFQADKSIEVRKFVIGFIEEACKRDIELL-----LKLIANLNMLLR 110 (386)
T ss_dssp HHHHHHHHHHHHHHTTCGG-----GGGGGHHHHHGGGGCSCHHHHHHHHHHHHHHHHHCGGGH-----HHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHhccCHH-----HHHHHHHHHHHhccCCcHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHc
Confidence 45555555555433 2222 124578888998888899999999999998876544432 235678888888
Q ss_pred CCCHHHHHHHHHHHHHhh--------cCCCCc----hhhHhcCC-hHHHHHhhcCCChhHHHHHHHHHHhcc
Q 005044 344 SPDVQLREMSAFALGRLA--------QDMHNQ----AGIAHNGG-LVPLLKLLDSKNGSLQHNAAFALYGLA 402 (717)
Q Consensus 344 ~~~~~v~~~a~~~L~~l~--------~~~~~~----~~l~~~~~-l~~L~~ll~~~~~~v~~~a~~~L~~l~ 402 (717)
+.++.+.+.++.+..++- .++... ..+-.... -..++.++.+.+..++..+...+..+.
T Consensus 111 d~d~~V~K~~I~~~tslYpl~f~~i~~~~~~~~~~e~~W~~m~~lK~~Il~~~ds~n~GVrl~aiKFle~VI 182 (386)
T 3o2t_A 111 DENVNVVKKAILTMTQLYKVALQWMVKSRVISELQEACWDMVSAMAGDIILLLDSDNDGIRTHAIKFVEGLI 182 (386)
T ss_dssp CSSHHHHHHHHHHHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHHHHHHHGGGCSSHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHHHHHHHhccCCcchHHHHHHHHHHHH
Confidence 889988887776655433 333221 22222222 233777788899999999999887763
No 176
>1x5b_A Signal transducing adaptor molecule 2; VHS domain, ubiquitin binding, STAM2, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2l0t_B
Probab=62.57 E-value=60 Score=27.70 Aligned_cols=70 Identities=4% Similarity=0.009 Sum_probs=52.9
Q ss_pred CcHHHHHhhcCCCHHHHHHHHHHHHHhhccC-hhhHHHHHhcCCHHHHHHHHcC-CCHHHHHHHHHHHHHhh
Q 005044 208 GIPPLVELLEFTDTKVQRAAAGALRTLAFKN-DENKNQIVECNALPTLILMLRS-EDSAIHYEAVGVIGNLV 277 (717)
Q Consensus 208 ~i~~L~~ll~~~~~~v~~~a~~~L~~L~~~~-~~~~~~~~~~g~i~~L~~ll~~-~~~~v~~~a~~~L~~l~ 277 (717)
++..|.+-|.+.++.++..|+..|-.+.... ......+.....+..|++++.. .++.|+..++..|..-+
T Consensus 53 A~ral~krl~~~n~~vql~AL~LLd~~vkNcG~~Fh~evas~~Fl~el~~l~~~~~~~~Vk~kil~li~~W~ 124 (163)
T 1x5b_A 53 CLKAIMKRVNHKVPHVALQALTLLGACVANCGKIFHLEVCSRDFATEVRAVIKNKAHPKVCEKLKSLMVEWS 124 (163)
T ss_dssp HHHHHHHHHTCSSHHHHHHHHHHHHHHHHHTCHHHHHHHTSHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhhHHHHHHHhhHHHHHHHHHHHccCCCHHHHHHHHHHHHHHH
Confidence 3457778888899999999999999888742 4455566666778888888865 56788888888776653
No 177
>2q81_A MIZ-1 protein; BTB/POZ domain, transcription; HET: PG4; 2.10A {Homo sapiens} PDB: 3m52_A
Probab=60.54 E-value=8.8 Score=30.86 Aligned_cols=30 Identities=17% Similarity=0.257 Sum_probs=27.9
Q ss_pred CChhcHHHHHHHHHHcCcHHHHHHHHHHHH
Q 005044 647 ISLENVSSMYELSEAFHAISLRHTCILYIM 676 (717)
Q Consensus 647 i~~~n~~~~~~~a~~~~~~~L~~~~~~~i~ 676 (717)
++.+|+..++..|+.|+.+.|++.|.+|+.
T Consensus 88 i~~~~~~~ll~~A~~l~i~~L~~~C~~~l~ 117 (119)
T 2q81_A 88 LSPENVDDVLAVATFLQMQDIITACHALKS 117 (119)
T ss_dssp CCTTTHHHHHHHHHHTTCHHHHHHHHHHHT
T ss_pred cCHHHHHHHHHHHHHhCCHHHHHHHHHHHh
Confidence 677899999999999999999999999874
No 178
>2vpk_A Myoneurin; transcription regulation, transcription, metal-binding, alternative splicing, zinc, nucleus, BTB domain, zinc-finger, DNA-binding; 2.00A {Homo sapiens}
Probab=60.14 E-value=7.3 Score=31.16 Aligned_cols=30 Identities=10% Similarity=0.193 Sum_probs=27.8
Q ss_pred CChhcHHHHHHHHHHcCcHHHHHHHHHHHH
Q 005044 647 ISLENVSSMYELSEAFHAISLRHTCILYIM 676 (717)
Q Consensus 647 i~~~n~~~~~~~a~~~~~~~L~~~~~~~i~ 676 (717)
++.+|+..++..|+.|+.+.|++.|.+|+.
T Consensus 86 ~~~~~v~~ll~~A~~~~i~~L~~~C~~~l~ 115 (116)
T 2vpk_A 86 LDSWNVKEIHQAADYLKVEEVVTKCKIKME 115 (116)
T ss_dssp CCTTTHHHHHHHHHHTTCHHHHHHHHHHHC
T ss_pred cCHHHHHHHHHHHHHhCCHHHHHHHHHHHh
Confidence 577899999999999999999999999874
No 179
>1buo_A POZ domain, protein (promyelocytic leukemia zinc finger prote; protein-protein interaction domain, transcriptional represso finger protein; 1.90A {Homo sapiens} SCOP: d.42.1.1 PDB: 1cs3_A
Probab=59.85 E-value=11 Score=30.34 Aligned_cols=32 Identities=13% Similarity=0.229 Sum_probs=29.2
Q ss_pred CChhcHHHHHHHHHHcCcHHHHHHHHHHHHHh
Q 005044 647 ISLENVSSMYELSEAFHAISLRHTCILYIMEH 678 (717)
Q Consensus 647 i~~~n~~~~~~~a~~~~~~~L~~~~~~~i~~~ 678 (717)
++.+|+..++..|+.|+.+.|++.|.+|+.+.
T Consensus 89 ~~~~~~~~ll~~A~~~~i~~L~~~c~~~l~~~ 120 (121)
T 1buo_A 89 AKAEDLDDLLYAAEILEIEYLEEQCLKMLETI 120 (121)
T ss_dssp CCGGGHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHh
Confidence 57789999999999999999999999998753
No 180
>3b84_A Zinc finger and BTB domain-containing protein 48; krueppel related zinc finger protein 3, HKR3, ZBTB48, Z finger, oncogene; 1.74A {Homo sapiens}
Probab=59.72 E-value=5.2 Score=32.26 Aligned_cols=32 Identities=6% Similarity=0.088 Sum_probs=27.5
Q ss_pred CChhcHHHHHHHHHHcCcHHHHHHHHHHHHHh
Q 005044 647 ISLENVSSMYELSEAFHAISLRHTCILYIMEH 678 (717)
Q Consensus 647 i~~~n~~~~~~~a~~~~~~~L~~~~~~~i~~~ 678 (717)
++.+|+..++..|+.|+.+.|++.|.+|+.++
T Consensus 86 ~~~~~v~~ll~~A~~~~i~~L~~~C~~~l~~~ 117 (119)
T 3b84_A 86 LTSGNRDQVLLAARELRVPEAVELCQSFKPKT 117 (119)
T ss_dssp CCTTTHHHHHHHHHHTTCHHHHHHHHHCC---
T ss_pred cCHHHHHHHHHHHHHhCcHHHHHHHHHHHHHc
Confidence 67789999999999999999999999998765
No 181
>1juq_A ADP-ribosylation factor binding protein GGA3; protein-peptide compelx, VHS domain, DXXLL sorting signal, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.9.2 PDB: 1jpl_A 1lf8_A*
Probab=57.93 E-value=78 Score=27.27 Aligned_cols=70 Identities=10% Similarity=0.071 Sum_probs=55.0
Q ss_pred CcHHHHHhhcCCCHHHHHHHHHHHHHhhccC-hhhHHHHHhcCCHHHHHHHHcC------CCHHHHHHHHHHHHHhh
Q 005044 208 GIPPLVELLEFTDTKVQRAAAGALRTLAFKN-DENKNQIVECNALPTLILMLRS------EDSAIHYEAVGVIGNLV 277 (717)
Q Consensus 208 ~i~~L~~ll~~~~~~v~~~a~~~L~~L~~~~-~~~~~~~~~~g~i~~L~~ll~~------~~~~v~~~a~~~L~~l~ 277 (717)
++..|.+-+++.++.++..|+..|-.+.... ......+.....+..|++++.. .+..|+..++..|..-+
T Consensus 51 A~ral~krl~~~n~~vql~AL~LLd~~vkNCG~~Fh~evas~~Fl~eL~kl~~~k~~~~~~~~~Vk~kil~li~~W~ 127 (171)
T 1juq_A 51 AVRLLAHKIQSPQEWEALQALTVLEACMKNCGRRFHNEVGKFRFLNELIKVVSPKYLGDRVSEKVKTKVIELLYSWT 127 (171)
T ss_dssp HHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSHHHHHHHHTSHHHHHHHHHHHCCCCCCTTSCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHHHHHcCHHHHHHHhhHHHHHHHHHHhccccCCCCCCHHHHHHHHHHHHHHH
Confidence 3567888888999999999999999998743 3455567777788889998863 36789998888887764
No 182
>3gs3_A Symplekin, LD45768P; helix-turn-helix heat repeat extended loop, transcription, protein binding; 2.40A {Drosophila melanogaster}
Probab=57.68 E-value=1.2e+02 Score=28.13 Aligned_cols=129 Identities=15% Similarity=0.192 Sum_probs=83.2
Q ss_pred HHHHHHHHHHHHhhcC-ChHHHHHHHHcCChHHHHHhhccCChHHHHHHHHHHHHHhcCChhhHHHHHhcCChHHHHHHh
Q 005044 264 AIHYEAVGVIGNLVHS-SPNIKKEVLAAGALQPVIGLLSSCCSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEML 342 (717)
Q Consensus 264 ~v~~~a~~~L~~l~~~-~~~~~~~~~~~g~l~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~l~~~~~l~~L~~~l 342 (717)
+.+...+.-...++.. ++..- ..+++.++.+..+.+.++|+..+..+...+...++... .+++.|..++
T Consensus 30 ~~kl~~L~qa~el~~~~dp~ll-----~~~l~~il~~~~~~~~~vrk~~~~Fi~e~~~~k~~l~~-----~~l~~L~~Ll 99 (257)
T 3gs3_A 30 STKCELLAKVQETVLGSCAELA-----EEFLESVLSLAHDSNMEVRKQVVAFVEQVCKVKVELLP-----HVINVVSMLL 99 (257)
T ss_dssp HHHHHHHHHHHHHHTTTTGGGH-----HHHHHHHHGGGGCSCHHHHHHHHHHHHHHHHHCGGGHH-----HHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHccCHhHH-----HHHHHHHHHhccCChHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHH
Confidence 5666666666665443 22221 23466677776677889999999999888755444332 3467888888
Q ss_pred cCCCHHHHHHHHHHHHHhh--------cCCCC----chhhHhcCCh-HHHHHhhcCCChhHHHHHHHHHHhcc
Q 005044 343 QSPDVQLREMSAFALGRLA--------QDMHN----QAGIAHNGGL-VPLLKLLDSKNGSLQHNAAFALYGLA 402 (717)
Q Consensus 343 ~~~~~~v~~~a~~~L~~l~--------~~~~~----~~~l~~~~~l-~~L~~ll~~~~~~v~~~a~~~L~~l~ 402 (717)
++.++.+.+.++.+..++- .++.. ...+-.-..+ ..+++++.+.+..++..+...+..+.
T Consensus 100 ~d~d~~V~K~~I~~~~~iY~~~l~~i~~~~~~~~~~~~~W~~m~~lK~~Il~~~~s~n~gvkl~~iKF~e~vI 172 (257)
T 3gs3_A 100 RDNSAQVIKRVIQACGSIYKNGLQYLCSLMEPGDSAEQAWNILSLIKAQILDMIDNENDGIRTNAIKFLEGVV 172 (257)
T ss_dssp TCSCHHHHHHHHHHHHHHHHHHHHHHTTSSSCCHHHHHHHHHHHHHHHHHHHGGGSSCHHHHHHHHHHHHHHH
T ss_pred cCCCHHHHHHHHHHHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHHHHHHHHHHccCCcchHHHHHHHHHHHH
Confidence 8888888887776655433 33321 1222222223 33778888899999999999887763
No 183
>1mhq_A ADP-ribosylation factor binding protein GGA2; super helix, protein transport; 2.20A {Homo sapiens} SCOP: a.118.9.2
Probab=57.65 E-value=84 Score=26.29 Aligned_cols=70 Identities=11% Similarity=0.077 Sum_probs=55.4
Q ss_pred CcHHHHHhhcCCCHHHHHHHHHHHHHhhcc-ChhhHHHHHhcCCHHHHHHHHcC------CCHHHHHHHHHHHHHhh
Q 005044 208 GIPPLVELLEFTDTKVQRAAAGALRTLAFK-NDENKNQIVECNALPTLILMLRS------EDSAIHYEAVGVIGNLV 277 (717)
Q Consensus 208 ~i~~L~~ll~~~~~~v~~~a~~~L~~L~~~-~~~~~~~~~~~g~i~~L~~ll~~------~~~~v~~~a~~~L~~l~ 277 (717)
++..|.+-+++.++.++..|+..|-.++.. .......+.....+..|++++.. .+..|+..++..|..-+
T Consensus 39 a~rai~krl~~~n~~vql~AL~LLe~~vkNCG~~fh~evas~~Fl~eL~kl~~~k~~~~~~~~~Vk~kil~li~~W~ 115 (148)
T 1mhq_A 39 APWLLAHKIQSPQEKEALYALTVLEMCMNHCGEKFHSEVAKFRFLNELIKVLSPKYLGSWATGKVKGRVIEILFSWT 115 (148)
T ss_dssp HHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHTSHHHHHHHHHTTCCSTTSCCCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHHHHHcCHHHHHHHhhHHHHHHHHHHHccccCCCCCCHHHHHHHHHHHHHHH
Confidence 456788888899999999999999999874 34556677777788889988864 37789998888887664
No 184
>3htm_A Speckle-type POZ protein; BTB, SPOP, ubiquitin, ligase, nucleus, UBL conjugation pathway, protein binding; 2.50A {Homo sapiens}
Probab=57.06 E-value=9.6 Score=33.02 Aligned_cols=34 Identities=21% Similarity=0.168 Sum_probs=30.6
Q ss_pred cchhhHHHHHHHHHhhChHhHHHHHHHHHHhcCC
Q 005044 615 VTLDIAQDLLRAADQYLLEGLKRLCEYTIAQDIS 648 (717)
Q Consensus 615 ~~~~~~~~ll~~A~~~~~~~l~~~c~~~l~~~i~ 648 (717)
++.+++.+++..|+.|+.+.|+..|..++.+++.
T Consensus 132 l~~~n~~~~~~~A~~~~~~~L~~~~~~~i~~~~~ 165 (172)
T 3htm_A 132 LSVENAAEILILADLHSADQLKTQAVDFINYHAT 165 (172)
T ss_dssp CCTTTHHHHHHHHHHTTCHHHHHHHHHHHHHTC-
T ss_pred CCHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHH
Confidence 5778999999999999999999999999998753
No 185
>2if5_A Zinc finger and BTB domain-containing protein 7A; POZ domain, POK, proto oncogene, transcription F transcription; 2.00A {Homo sapiens} PDB: 2nn2_A
Probab=55.27 E-value=13 Score=29.73 Aligned_cols=29 Identities=17% Similarity=0.359 Sum_probs=27.1
Q ss_pred CChhcHHHHHHHHHHcCcHHHHHHHHHHH
Q 005044 647 ISLENVSSMYELSEAFHAISLRHTCILYI 675 (717)
Q Consensus 647 i~~~n~~~~~~~a~~~~~~~L~~~~~~~i 675 (717)
++.+|+..++..|+.|+.+.|++.|.+|+
T Consensus 91 ~~~~~~~~ll~~A~~~~i~~L~~~C~~~L 119 (120)
T 2if5_A 91 VSTANVGDILSAARLLEIPAVSHVCADLL 119 (120)
T ss_dssp CCGGGHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHhCCHHHHHHHHHHh
Confidence 57789999999999999999999999986
No 186
>2z8h_A Transcription regulator protein BACH1; BTB, POZ, disulfide bond, activator, DNA-binding, nucleus, phosphorylation, repressor; 2.50A {Mus musculus}
Probab=54.09 E-value=3.8 Score=34.22 Aligned_cols=33 Identities=18% Similarity=0.411 Sum_probs=30.4
Q ss_pred CChhcHHHHHHHHHHcCcHHHHHHHHHHHHHhH
Q 005044 647 ISLENVSSMYELSEAFHAISLRHTCILYIMEHF 679 (717)
Q Consensus 647 i~~~n~~~~~~~a~~~~~~~L~~~~~~~i~~~~ 679 (717)
++.+|+..++..|+.|+.+.|++.|.+|+.+++
T Consensus 101 i~~~~v~~ll~~A~~~~i~~L~~~C~~~l~~~l 133 (138)
T 2z8h_A 101 LSKDNVDEVCRCVEFLSVHNIEESCFQFLKFKF 133 (138)
T ss_dssp CCTTTHHHHHHHHHHHTCGGGHHHHHHHTTCCC
T ss_pred cCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhc
Confidence 678899999999999999999999999998764
No 187
>2ast_A S-phase kinase-associated protein 1A; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} PDB: 2ass_A* 2e31_B 2e32_B 3l2o_A 1p22_B* 2ovr_A* 2ovp_A 1fqv_B* 2ovq_A*
Probab=52.04 E-value=24 Score=30.07 Aligned_cols=64 Identities=5% Similarity=0.008 Sum_probs=48.9
Q ss_pred cchhhHHHHHHHHHhhCh---------------HhHHHHHHHHHHhcCChhcHHHHHHHHHHcCcHHHHHHHHHHHHHhH
Q 005044 615 VTLDIAQDLLRAADQYLL---------------EGLKRLCEYTIAQDISLENVSSMYELSEAFHAISLRHTCILYIMEHF 679 (717)
Q Consensus 615 ~~~~~~~~ll~~A~~~~~---------------~~l~~~c~~~l~~~i~~~n~~~~~~~a~~~~~~~L~~~~~~~i~~~~ 679 (717)
++...+..|+..+.+..- ..+.....+|+ .++.++++.++..|...+...|.+.|.+|+...+
T Consensus 49 V~~~iL~kViey~~~h~~~~~~~~~~~~~~~~~~~i~~wD~~F~--~id~~~l~eLl~AAnyL~I~~Lld~~c~~va~~i 126 (159)
T 2ast_A 49 VNAAILKKVIQWCTHHKDDPPPPEDDENKEKRTDDIPVWDQEFL--KVDQGTLFELILAANYLDIKGLLDVTCKTVANMI 126 (159)
T ss_dssp SCHHHHHHHHHHHHHTTTCCC-----------CCCCCHHHHHHT--CSCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHcCcCCCCcccccccccchhhhhHHHHHHH--cCCHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Confidence 456667778888876651 22334455566 3899999999999999999999999999998665
Q ss_pred H
Q 005044 680 D 680 (717)
Q Consensus 680 ~ 680 (717)
.
T Consensus 127 ~ 127 (159)
T 2ast_A 127 K 127 (159)
T ss_dssp S
T ss_pred c
Confidence 4
No 188
>1mhq_A ADP-ribosylation factor binding protein GGA2; super helix, protein transport; 2.20A {Homo sapiens} SCOP: a.118.9.2
Probab=51.22 E-value=33 Score=28.76 Aligned_cols=71 Identities=10% Similarity=-0.063 Sum_probs=57.0
Q ss_pred hHHHHHhhccCChHHHHHHHHHHHHHhcCC-hhhHHHHHhcCChHHHHHHhcC------CCHHHHHHHHHHHHHhhcC
Q 005044 293 LQPVIGLLSSCCSESQREAALLLGQFAATD-SDCKVHIVQRGAVRPLIEMLQS------PDVQLREMSAFALGRLAQD 363 (717)
Q Consensus 293 l~~L~~ll~~~~~~~~~~a~~~L~~l~~~~-~~~~~~l~~~~~l~~L~~~l~~------~~~~v~~~a~~~L~~l~~~ 363 (717)
+..|.+-+.+.++.++..|+.+|..+..++ ..+...+....++..|+.++.. .++.|+..++..+..++..
T Consensus 40 ~rai~krl~~~n~~vql~AL~LLe~~vkNCG~~fh~evas~~Fl~eL~kl~~~k~~~~~~~~~Vk~kil~li~~W~~~ 117 (148)
T 1mhq_A 40 PWLLAHKIQSPQEKEALYALTVLEMCMNHCGEKFHSEVAKFRFLNELIKVLSPKYLGSWATGKVKGRVIEILFSWTVW 117 (148)
T ss_dssp HHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHTSHHHHHHHHHTTCCSTTSCCCCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHHHHHcCHHHHHHHhhHHHHHHHHHHHccccCCCCCCHHHHHHHHHHHHHHHHH
Confidence 566777788889999999998888887653 5566778888899999998863 4789999999999888864
No 189
>1x5b_A Signal transducing adaptor molecule 2; VHS domain, ubiquitin binding, STAM2, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2l0t_B
Probab=50.46 E-value=31 Score=29.50 Aligned_cols=70 Identities=11% Similarity=0.133 Sum_probs=54.8
Q ss_pred hHHHHHhhccCChHHHHHHHHHHHHHhcCC-hhhHHHHHhcCChHHHHHHhcC-CCHHHHHHHHHHHHHhhc
Q 005044 293 LQPVIGLLSSCCSESQREAALLLGQFAATD-SDCKVHIVQRGAVRPLIEMLQS-PDVQLREMSAFALGRLAQ 362 (717)
Q Consensus 293 l~~L~~ll~~~~~~~~~~a~~~L~~l~~~~-~~~~~~l~~~~~l~~L~~~l~~-~~~~v~~~a~~~L~~l~~ 362 (717)
+..|.+-|.+.++.++..|+.+|..+..++ ..+...+....++..|+.++.. .++.|+..++..+..++.
T Consensus 54 ~ral~krl~~~n~~vql~AL~LLd~~vkNcG~~Fh~evas~~Fl~el~~l~~~~~~~~Vk~kil~li~~W~~ 125 (163)
T 1x5b_A 54 LKAIMKRVNHKVPHVALQALTLLGACVANCGKIFHLEVCSRDFATEVRAVIKNKAHPKVCEKLKSLMVEWSE 125 (163)
T ss_dssp HHHHHHHHTCSSHHHHHHHHHHHHHHHHHTCHHHHHHHTSHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHHHHHhhHHHHHHHhhHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHH
Confidence 456777778888888888888888776553 4556677777888888888865 678999999998888875
No 190
>3s4w_B Protein FACD2, fanconi anemia group D2 protein homolog; DNA repair, DNA binding protein; 3.41A {Mus musculus}
Probab=49.18 E-value=3.9e+02 Score=31.45 Aligned_cols=131 Identities=13% Similarity=0.101 Sum_probs=70.2
Q ss_pred CHHHHHHHHHHHHHhhcCChHHHHHHHHcCChHHHHHhh-ccCChHHHHHHHHHHHHHhcCCh---hhHHH------HHh
Q 005044 262 DSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLL-SSCCSESQREAALLLGQFAATDS---DCKVH------IVQ 331 (717)
Q Consensus 262 ~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~l~~L~~ll-~~~~~~~~~~a~~~L~~l~~~~~---~~~~~------l~~ 331 (717)
+..+...-+..|.++....+ ...++.++=++ -+.+...++.+-.++.+...... ..... .+-
T Consensus 323 ~k~i~eAwlK~I~~~~~~~~--------hk~~Dl~vLlii~s~n~~~rk~aE~ilrkkI~~G~it~~ll~~~f~~h~~vL 394 (1323)
T 3s4w_B 323 EKTISEAWFKAIERIESAAE--------HKSLDVVMLLIIYSTSTQTKKGVEKLLRNKIQSDCIQEQLLDSAFSTHYLVL 394 (1323)
T ss_dssp CHHHHHHHHHHHHHGGGSTT--------CCTHHHHHHHHHHHHCHHHHHHHHHHHHHHHTTTCSCHHHHHHHHHHHHHHH
T ss_pred ChHHHHHHHHHHhCCCcccc--------cchhHHHHHHHHHcCCchhHHHHHHHHHHHHHcCCchHHHHHHHHHhhHHHH
Confidence 55666666666666643211 23445444433 22233455666666665543221 00000 111
Q ss_pred cCChHHHHHH----hcCCCHHHHHHHHHHHHHhhcCCCCchhhHhcCChHHHHHhhcCCChhHHHHHHHHHHhccC
Q 005044 332 RGAVRPLIEM----LQSPDVQLREMSAFALGRLAQDMHNQAGIAHNGGLVPLLKLLDSKNGSLQHNAAFALYGLAD 403 (717)
Q Consensus 332 ~~~l~~L~~~----l~~~~~~v~~~a~~~L~~l~~~~~~~~~l~~~~~l~~L~~ll~~~~~~v~~~a~~~L~~l~~ 403 (717)
...++.++.+ +++.++.++..+......+-...+ ...+..++..|+..+-+++..-...|+.+|..|+.
T Consensus 395 ~~~f~siL~La~~Ll~S~~~~v~~Fg~~lY~~lF~~fd---~~~qqeVl~~Lv~hi~sg~~~eVd~ALdvL~~L~~ 467 (1323)
T 3s4w_B 395 KDICPSILLLAQTLFHSQDQRIILFGSLLYKYAFKFFD---TYCQQEVVGALVTHVCSGTEAEVDTALDVLLELIV 467 (1323)
T ss_dssp TTSHHHHHHHHHHHHTSSSHHHHHHHHHHHHHHHHSSC---HHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhcc---chhHHHHHHHHHhhhcCCCcHHHHHHHHHHHHHHh
Confidence 3455655544 467888888888877666655332 23334455666666656655555668888888774
No 191
>1fs1_B SKP1, cyclin A/CDK2-associated P45; F-BOX, LRR, leucine-rich repeat, SCF, ubiquitin, ubiquitin protein ligase; 1.80A {Homo sapiens} SCOP: a.157.1.1 d.42.1.1 PDB: 1fs2_B 1ldk_D
Probab=48.21 E-value=65 Score=26.67 Aligned_cols=81 Identities=6% Similarity=0.016 Sum_probs=55.4
Q ss_pred HHHHHHHHHHhcCccc---cchhhHHHHHHHHHhhCh---------------HhHHHHHHHHHHhcCChhcHHHHHHHHH
Q 005044 599 EVFELMMRFIYTGSVD---VTLDIAQDLLRAADQYLL---------------EGLKRLCEYTIAQDISLENVSSMYELSE 660 (717)
Q Consensus 599 ~~~~~~l~~~Yt~~~~---~~~~~~~~ll~~A~~~~~---------------~~l~~~c~~~l~~~i~~~n~~~~~~~a~ 660 (717)
..++.++.-.-.+.++ ++...+..+++.+.+..- ..+...-.+|+ .++.+++++++..|.
T Consensus 25 ~~ik~ml~~~~~~~Ipl~~V~~~iL~kVieyc~~h~~~~~~~~~~~~~~~~~~~i~~wD~~F~--~vd~~~l~eLi~AAn 102 (141)
T 1fs1_B 25 VTIKTMLEDLGMDPVPLPNVNAAILKKVIQWCTHHKDDPPPPEDDENKEKRTDDIPVWDQEFL--KVDQGTLFELILAAN 102 (141)
T ss_dssp HHHHHHHHHTCCSSEECTTCCHHHHHHHHHHHHHHTTCC-----------------HHHHHHT--CSCHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCCCceecCCcCHHHHHHHHHHHHHhccCCCccccccccccchhhhhHHHHHHH--hCCHHHHHHHHHHHH
Confidence 3455555432123343 456778888888887662 23344445555 389999999999999
Q ss_pred HcCcHHHHHHHHHHHHHhHHH
Q 005044 661 AFHAISLRHTCILYIMEHFDK 681 (717)
Q Consensus 661 ~~~~~~L~~~~~~~i~~~~~~ 681 (717)
..+...|.+.|.++++.....
T Consensus 103 yL~I~~Lldl~c~~vA~~ikg 123 (141)
T 1fs1_B 103 YLDIKGLLDVTCKTVANMIKG 123 (141)
T ss_dssp HHTCHHHHHHHHHHHHHHHTT
T ss_pred HHhhhHHHHHHHHHHHHHHcC
Confidence 999999999999999876543
No 192
>2r9r_B Paddle chimera voltage gated potassium channel KV; voltage sensor, voltage dependent, ION CH shaker, membrane protein, eukaryotic; HET: NAP PGW; 2.40A {Rattus norvegicus} PDB: 3lnm_B* 3lut_B* 2a79_B*
Probab=45.00 E-value=19 Score=37.77 Aligned_cols=83 Identities=12% Similarity=0.168 Sum_probs=58.5
Q ss_pred ccEEEEEcCeEeehhHHHHhhccHHHHHhhcC-----CCCCCCCcceEcCCCCHHHHHHHHHHHhc-Cccccchh-hHHH
Q 005044 550 SDVTFLVEGRRFYAHRICLLASSDAFRAMFDG-----GYREKDARDIEIPNIRWEVFELMMRFIYT-GSVDVTLD-IAQD 622 (717)
Q Consensus 550 ~Dv~~~~~~~~~~~h~~il~~~s~~f~~~~~~-----~~~e~~~~~i~l~~~~~~~~~~~l~~~Yt-~~~~~~~~-~~~~ 622 (717)
.-|.+.|+|..|...+..|..... .++.. .+.....+.+.+ |=++..|+.+|+|+.+ |++..+.+ ....
T Consensus 52 ~~v~lNVgG~~f~t~~~tL~~~p~---s~l~~~~~~~~~~~~~~~~~f~-DR~~~~F~~IL~~~r~~g~l~~p~~~~~~~ 127 (514)
T 2r9r_B 52 ERVVINISGLRFETQLKTLAQFPE---TLLGDPKKRMRYFDPLRNEYFF-DRNRPSFDAILYYYQSGGRLRRPVNVPLDI 127 (514)
T ss_dssp CEEEEEETTEEEEEEHHHHTTSTT---STTTCHHHHGGGEETTTTEEEE-CSCHHHHHHHHHHHHHTSCCCCCTTSCHHH
T ss_pred CEEEEEeCCEEEEecHHHHhcCCC---CcccccccCCcccCCCCCCEEE-cCChHHHHHHHHHHhcCCccccCCcccHHH
Confidence 347889999999999999875322 22211 011122344555 6799999999999999 99876554 3567
Q ss_pred HHHHHHhhChHhHH
Q 005044 623 LLRAADQYLLEGLK 636 (717)
Q Consensus 623 ll~~A~~~~~~~l~ 636 (717)
+.+=|++|+++++.
T Consensus 128 ~~~E~~f~~i~~~~ 141 (514)
T 2r9r_B 128 FSEEIRFYELGEEA 141 (514)
T ss_dssp HHHHHHHTTCCHHH
T ss_pred HHHHHHhcCCCHHH
Confidence 88899999997754
No 193
>3ldz_A STAM-1, signal transducing adapter molecule 1; ubiquitin-binding, cytoplasm, UBL conjugation, endosome, membrane, protein transport, SH3 domain; 2.60A {Homo sapiens} SCOP: a.118.9.0
Probab=44.43 E-value=50 Score=27.38 Aligned_cols=70 Identities=11% Similarity=0.108 Sum_probs=52.4
Q ss_pred hHHHHHhhccCChHHHHHHHHHHHHHhcCC-hhhHHHHHhcCChHHHHHHhcCCCHHHHHHHHHHHHHhhc
Q 005044 293 LQPVIGLLSSCCSESQREAALLLGQFAATD-SDCKVHIVQRGAVRPLIEMLQSPDVQLREMSAFALGRLAQ 362 (717)
Q Consensus 293 l~~L~~ll~~~~~~~~~~a~~~L~~l~~~~-~~~~~~l~~~~~l~~L~~~l~~~~~~v~~~a~~~L~~l~~ 362 (717)
+..+.+-|.+.++.++..|+..|..+..++ ......+....++..+..++...++.|+..++..+..++.
T Consensus 44 ~rai~Krl~~~n~~~ql~AL~LLe~~vkNcG~~f~~evas~~Fl~el~~l~~~~~~~Vk~kil~li~~W~~ 114 (140)
T 3ldz_A 44 LRSIMRRVNHKDPHVAMQALTLLGACVSNCGKIFHLEVCSRDFASEVSNVLNKGHPKVCEKLKALMVEWTD 114 (140)
T ss_dssp HHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHSSHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCChHHHHHHHHHHHHHHHhcCHHHHHHHhhHHHHHHHHHHhccCCHHHHHHHHHHHHHHHH
Confidence 455666677778888888887777776543 4445566667778888888877889999999999988875
No 194
>2ppi_A Gigaxonin; BTB domain, protein degradation, structural genomics, struct genomics consortium, SGC, structural protein; 2.40A {Homo sapiens}
Probab=42.96 E-value=12 Score=31.27 Aligned_cols=29 Identities=7% Similarity=0.356 Sum_probs=26.8
Q ss_pred CChhcHHHHHHHHHHcCcHHHHHHHHHHH
Q 005044 647 ISLENVSSMYELSEAFHAISLRHTCILYI 675 (717)
Q Consensus 647 i~~~n~~~~~~~a~~~~~~~L~~~~~~~i 675 (717)
++.+|+..++..|+.|+.+.|++.|.+|+
T Consensus 115 i~~~~v~~ll~~A~~l~i~~L~~~C~~~L 143 (144)
T 2ppi_A 115 LNEDTIQDVVQAADLLLLTDLKTLCCEFL 143 (144)
T ss_dssp CCTTTHHHHHHHHHHTTCHHHHHHHHTTC
T ss_pred CCHHHHHHHHHHHHHhCcHHHHHHHHHHh
Confidence 57889999999999999999999999875
No 195
>3ldz_A STAM-1, signal transducing adapter molecule 1; ubiquitin-binding, cytoplasm, UBL conjugation, endosome, membrane, protein transport, SH3 domain; 2.60A {Homo sapiens} SCOP: a.118.9.0
Probab=42.83 E-value=36 Score=28.21 Aligned_cols=70 Identities=7% Similarity=0.028 Sum_probs=52.0
Q ss_pred CcHHHHHhhcCCCHHHHHHHHHHHHHhhccC-hhhHHHHHhcCCHHHHHHHHcCCCHHHHHHHHHHHHHhh
Q 005044 208 GIPPLVELLEFTDTKVQRAAAGALRTLAFKN-DENKNQIVECNALPTLILMLRSEDSAIHYEAVGVIGNLV 277 (717)
Q Consensus 208 ~i~~L~~ll~~~~~~v~~~a~~~L~~L~~~~-~~~~~~~~~~g~i~~L~~ll~~~~~~v~~~a~~~L~~l~ 277 (717)
++..|.+-+.+.++.++..|+..|-.++... ......+.....+..+.+++...++.|+..++..+..-+
T Consensus 43 a~rai~Krl~~~n~~~ql~AL~LLe~~vkNcG~~f~~evas~~Fl~el~~l~~~~~~~Vk~kil~li~~W~ 113 (140)
T 3ldz_A 43 CLRSIMRRVNHKDPHVAMQALTLLGACVSNCGKIFHLEVCSRDFASEVSNVLNKGHPKVCEKLKALMVEWT 113 (140)
T ss_dssp HHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHSSHHHHHHHHHHHHHSCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCChHHHHHHHHHHHHHHHhcCHHHHHHHhhHHHHHHHHHHhccCCHHHHHHHHHHHHHHH
Confidence 4567777888899999999999888887643 333445555567777888887778889888888887654
No 196
>3g2s_A C-terminal fragment of sortilin-related receptor; ADP-ribosylation factor binding protein GGA1, VHS, acidic- cluster dileucine signal, sorla; 1.70A {Homo sapiens} SCOP: a.118.9.2 PDB: 3g2t_A* 3g2u_A 3g2v_A* 3g2w_A 1ujk_A* 1jwf_A 1ujj_A 1jwg_A* 1py1_A*
Probab=41.72 E-value=94 Score=26.00 Aligned_cols=71 Identities=8% Similarity=-0.032 Sum_probs=55.6
Q ss_pred hHHHHHhhccCChHHHHHHHHHHHHHhcCC-hhhHHHHHhcCChHHHHHHhcC------CCHHHHHHHHHHHHHhhcC
Q 005044 293 LQPVIGLLSSCCSESQREAALLLGQFAATD-SDCKVHIVQRGAVRPLIEMLQS------PDVQLREMSAFALGRLAQD 363 (717)
Q Consensus 293 l~~L~~ll~~~~~~~~~~a~~~L~~l~~~~-~~~~~~l~~~~~l~~L~~~l~~------~~~~v~~~a~~~L~~l~~~ 363 (717)
+..|.+-+.+.++.++..|+..|..+..++ ..+...+....++..|+.++.. .++.|+..++..+..++..
T Consensus 50 ~ral~krl~~~n~~v~l~AL~LLe~cvkNCG~~fh~eias~~Fl~eL~kl~~~k~~~~~~~~~Vk~kil~li~~W~~~ 127 (149)
T 3g2s_A 50 TRLLAHKIQSPQEWEAIQALTVLETCMKSCGKRFHDEVGKFRFLNELIKVVSPKYLGSRTSEKVKNKILELLYSWTVG 127 (149)
T ss_dssp HHHHHHHHTCSSHHHHHHHHHHHHHHHHHCCHHHHHHHTSHHHHHHHHHHHCTTTTGGGSCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHHHHhcCHHHHHHHhhHHHHHHHHHHHcccccCCCCCHHHHHHHHHHHHHHHHH
Confidence 556777778888889888888888776543 4556677778888999999863 5789999999999988863
No 197
>1juq_A ADP-ribosylation factor binding protein GGA3; protein-peptide compelx, VHS domain, DXXLL sorting signal, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.9.2 PDB: 1jpl_A 1lf8_A*
Probab=41.45 E-value=55 Score=28.21 Aligned_cols=71 Identities=8% Similarity=-0.027 Sum_probs=56.8
Q ss_pred hHHHHHhhccCChHHHHHHHHHHHHHhcCC-hhhHHHHHhcCChHHHHHHhcC------CCHHHHHHHHHHHHHhhcC
Q 005044 293 LQPVIGLLSSCCSESQREAALLLGQFAATD-SDCKVHIVQRGAVRPLIEMLQS------PDVQLREMSAFALGRLAQD 363 (717)
Q Consensus 293 l~~L~~ll~~~~~~~~~~a~~~L~~l~~~~-~~~~~~l~~~~~l~~L~~~l~~------~~~~v~~~a~~~L~~l~~~ 363 (717)
+..|.+-+.+.++.++..|+.+|..+..++ ..+...+....++..|+.++.. .+..|+..++..+..++..
T Consensus 52 ~ral~krl~~~n~~vql~AL~LLd~~vkNCG~~Fh~evas~~Fl~eL~kl~~~k~~~~~~~~~Vk~kil~li~~W~~~ 129 (171)
T 1juq_A 52 VRLLAHKIQSPQEWEALQALTVLEACMKNCGRRFHNEVGKFRFLNELIKVVSPKYLGDRVSEKVKTKVIELLYSWTMA 129 (171)
T ss_dssp HHHHHHHHTCSSHHHHHHHHHHHHHHHHHSHHHHHHHHTSHHHHHHHHHHHCCCCCCTTSCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHHHHHcCHHHHHHHhhHHHHHHHHHHhccccCCCCCCHHHHHHHHHHHHHHHHH
Confidence 556778888889999999998888887654 4556678788889999999863 4689999999999988863
No 198
>4eoz_A Speckle-type POZ protein; E3 ubiquitin ligase, nucleus, protein binding; 2.40A {Homo sapiens}
Probab=40.98 E-value=13 Score=30.93 Aligned_cols=33 Identities=6% Similarity=0.087 Sum_probs=26.2
Q ss_pred CChhcHHHHHHHHHHcCcHHHHHHHHHHHHHhH
Q 005044 647 ISLENVSSMYELSEAFHAISLRHTCILYIMEHF 679 (717)
Q Consensus 647 i~~~n~~~~~~~a~~~~~~~L~~~~~~~i~~~~ 679 (717)
++.+++..++..|+.|+.+.|++.|.+|+.+++
T Consensus 91 ~~~~~~~~ll~~A~~~~~~~l~~~c~~~l~~~l 123 (145)
T 4eoz_A 91 NLDKMADDLLAAADKYALERLKVMCEDALCSNL 123 (145)
T ss_dssp TGGGTHHHHHHHHHHTTCHHHHHHHHCC-----
T ss_pred CcHHHHHHHHHHHHHhCHHHHHHHHHHHHHHhC
Confidence 457889999999999999999999999998764
No 199
>3zyq_A Hepatocyte growth factor-regulated tyrosine kinas substrate; signaling; 1.48A {Homo sapiens} PDB: 4avx_A*
Probab=38.89 E-value=1.8e+02 Score=26.32 Aligned_cols=70 Identities=7% Similarity=0.122 Sum_probs=51.1
Q ss_pred CcHHHHHhhcCCCHHHHHHHHHHHHHhhccC-hhhHHHHHhcCCHHHHHHHHcC-CCHHHHHHHHHHHHHhh
Q 005044 208 GIPPLVELLEFTDTKVQRAAAGALRTLAFKN-DENKNQIVECNALPTLILMLRS-EDSAIHYEAVGVIGNLV 277 (717)
Q Consensus 208 ~i~~L~~ll~~~~~~v~~~a~~~L~~L~~~~-~~~~~~~~~~g~i~~L~~ll~~-~~~~v~~~a~~~L~~l~ 277 (717)
++..|.+-+.+.++.++..|+..|-.++.+. ......+.....+..|.+++.. .+..|+..++..|..-+
T Consensus 46 a~ral~krl~~~n~~v~l~aL~LLe~~vkNcG~~f~~eias~~fl~~l~~l~~~~~~~~Vk~kil~li~~W~ 117 (226)
T 3zyq_A 46 AVNSIKKKVNDKNPHVALYALEVMESVVKNCGQTVHDEVANKQTMEELKDLLKRQVEVNVRNKILYLIQAWA 117 (226)
T ss_dssp HHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHCHHHHHHHSSHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHHHHhcchHHHHhhccHHHHHHHHHHhccCCCHHHHHHHHHHHHHHH
Confidence 3567888888999999999999999888632 2335555555667777777754 46788888888776664
No 200
>3m5b_A Zinc finger and BTB domain-containing protein 32; POZ domain, BTB/POZ domain, ZBTB32, zinc finger domain-containing protein 32; 2.00A {Homo sapiens} SCOP: d.42.1.0
Probab=38.81 E-value=22 Score=28.51 Aligned_cols=31 Identities=16% Similarity=0.203 Sum_probs=27.2
Q ss_pred CChhcHHHHHHHHHHcCcHHHHHHHHHHHHH
Q 005044 647 ISLENVSSMYELSEAFHAISLRHTCILYIME 677 (717)
Q Consensus 647 i~~~n~~~~~~~a~~~~~~~L~~~~~~~i~~ 677 (717)
++.+|+..++..|+.|+.+.|++.|.+++..
T Consensus 87 i~~~~v~~ll~aA~~l~i~~l~~~C~~~~~~ 117 (119)
T 3m5b_A 87 LQPGELRPLQEAARALGVQSLEEACWRARGD 117 (119)
T ss_dssp ECGGGHHHHHHHHHHTTCHHHHHHHHHHC--
T ss_pred cCHHHHHHHHHHHHHhCCHHHHHHHHHHHhh
Confidence 6789999999999999999999999988654
No 201
>3hqi_A Speckle-type POZ protein; SPOP, ubiquitin, puckered, nucleus, UBL conjugation pathway, protein binding, ligase; 2.62A {Homo sapiens} PDB: 3hu6_A
Probab=37.97 E-value=25 Score=33.93 Aligned_cols=33 Identities=21% Similarity=0.158 Sum_probs=30.4
Q ss_pred cchhhHHHHHHHHHhhChHhHHHHHHHHHHhcC
Q 005044 615 VTLDIAQDLLRAADQYLLEGLKRLCEYTIAQDI 647 (717)
Q Consensus 615 ~~~~~~~~ll~~A~~~~~~~l~~~c~~~l~~~i 647 (717)
++.+++..++.+|+.|+++.|+..|.+++..++
T Consensus 272 ~~~~n~~~~l~~A~~~~~~~L~~~~~~~i~~~~ 304 (312)
T 3hqi_A 272 LSVENAAEILILADLHSADQLKTQAVDFINYHA 304 (312)
T ss_dssp CCTTTHHHHHHHHHHTTCHHHHHHHHHHHHHTC
T ss_pred CCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHH
Confidence 567899999999999999999999999999875
No 202
>3g2s_A C-terminal fragment of sortilin-related receptor; ADP-ribosylation factor binding protein GGA1, VHS, acidic- cluster dileucine signal, sorla; 1.70A {Homo sapiens} SCOP: a.118.9.2 PDB: 3g2t_A* 3g2u_A 3g2v_A* 3g2w_A 1ujk_A* 1jwf_A 1ujj_A 1jwg_A* 1py1_A*
Probab=37.55 E-value=86 Score=26.26 Aligned_cols=70 Identities=10% Similarity=0.055 Sum_probs=54.1
Q ss_pred CcHHHHHhhcCCCHHHHHHHHHHHHHhhccC-hhhHHHHHhcCCHHHHHHHHcC------CCHHHHHHHHHHHHHhh
Q 005044 208 GIPPLVELLEFTDTKVQRAAAGALRTLAFKN-DENKNQIVECNALPTLILMLRS------EDSAIHYEAVGVIGNLV 277 (717)
Q Consensus 208 ~i~~L~~ll~~~~~~v~~~a~~~L~~L~~~~-~~~~~~~~~~g~i~~L~~ll~~------~~~~v~~~a~~~L~~l~ 277 (717)
.+..|.+-+.+.++.++..|+..|-.++... ......+....++..|++++.. .++.|+..++..|..-+
T Consensus 49 a~ral~krl~~~n~~v~l~AL~LLe~cvkNCG~~fh~eias~~Fl~eL~kl~~~k~~~~~~~~~Vk~kil~li~~W~ 125 (149)
T 3g2s_A 49 ATRLLAHKIQSPQEWEAIQALTVLETCMKSCGKRFHDEVGKFRFLNELIKVVSPKYLGSRTSEKVKNKILELLYSWT 125 (149)
T ss_dssp HHHHHHHHHTCSSHHHHHHHHHHHHHHHHHCCHHHHHHHTSHHHHHHHHHHHCTTTTGGGSCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHHHHhcCHHHHHHHhhHHHHHHHHHHHcccccCCCCCHHHHHHHHHHHHHHH
Confidence 4567788888999999999999999887643 3345566666788889998863 47789988888887764
No 203
>2plx_B Peptide inhibitor; helix-turn-helix, hydrolase; HET: FLC; 1.56A {Bos taurus}
Probab=36.08 E-value=27 Score=18.12 Aligned_cols=21 Identities=10% Similarity=0.164 Sum_probs=16.8
Q ss_pred HHHHHHHHcCcHHHHHHHHHH
Q 005044 654 SMYELSEAFHAISLRHTCILY 674 (717)
Q Consensus 654 ~~~~~a~~~~~~~L~~~~~~~ 674 (717)
.++-+|.+++.++|...|++-
T Consensus 3 kvmcyaqrhsspellrrcldn 23 (26)
T 2plx_B 3 KVMCYAQRHSSPELLRRCLDN 23 (26)
T ss_dssp HHHHHHBCCCCHHHHHHHHHH
T ss_pred eEEeehhhcCCHHHHHHHHhc
Confidence 467788889999998888764
No 204
>3pst_A Protein DOA1; protein degradation, CDC48, ubiquitin, nuclear protein; 2.00A {Saccharomyces cerevisiae} PDB: 3psp_A
Probab=33.15 E-value=91 Score=31.31 Aligned_cols=131 Identities=12% Similarity=0.107 Sum_probs=75.8
Q ss_pred HHHHHHHHHhhcCchhhhHHHhcCCcHHHH-HhhcCCCHHHHHHHHHHHHHhhccChhhHHHHHh-cCCHHHHHHHHcC-
Q 005044 184 RAADAITNLAHENSSIKTRVRMEGGIPPLV-ELLEFTDTKVQRAAAGALRTLAFKNDENKNQIVE-CNALPTLILMLRS- 260 (717)
Q Consensus 184 ~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~-~ll~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~-~g~i~~L~~ll~~- 260 (717)
.++.+|+-+..+.+... .+..++ ..+.+..+..+..++++++|+-. .+.....+.. ......+++.+.+
T Consensus 245 PaLDLLRl~v~~p~~~~-------~l~~li~~~l~~~~~an~MltlR~laNlF~-~~~~g~~ll~~~~~~~~i~~~i~~~ 316 (425)
T 3pst_A 245 PAYDIVRLIVKKLPYSS-------DIKDYIEEGLGNKNITLTMLTVRILVNCFN-NENWGVKLLESNQVYKSIFETIDTE 316 (425)
T ss_dssp HHHHHHHHHGGGCSCGG-------GGHHHHHHHTTCSSHHHHHHHHHHHHHHTT-CTTTHHHHHTSHHHHHHHHHHSCCC
T ss_pred HHHHHHHHHHcCCchHH-------HHHHHHHHhcCCCChhHHHHHHHHHHHhcC-CcchHHHHhhCchhHHHHHHHHHHH
Confidence 36666666555333221 222233 23335578899999999999986 4553333332 2234455554431
Q ss_pred -------CCHHHHHHHHHHHHHhhcCChHHHHHHHHcCChHHHHHhhc---------cCChHHHHHHHHHHHHHhcCChh
Q 005044 261 -------EDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLS---------SCCSESQREAALLLGQFAATDSD 324 (717)
Q Consensus 261 -------~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~l~~L~~ll~---------~~~~~~~~~a~~~L~~l~~~~~~ 324 (717)
.+..++..++..+.|++......+ .+..++..+.+++. ..+.+....++.++++|....+.
T Consensus 317 l~~~~~~~nkNl~IA~ATLllNlAv~~~~~~---~~~el~~~l~e~l~~~~g~~E~~~~d~EA~yRlLVALGtLv~~~~~ 393 (425)
T 3pst_A 317 FSQASAKQSQNLAIAVSTLIFNYSALVTKGN---SDLELLPIVADAINTKYGPLEEYQECEEAAYRLTVAYGNLATVEPT 393 (425)
T ss_dssp CTTCCHHHHHHHHHHHHHHHHHHHHHHHHSC---SCTTHHHHHHHHHHHTTTTSHHHHTSHHHHHHHHHHHHHHHHHCHH
T ss_pred hhhcccCCCchHHHHHHHHHHHHHHHHhccc---chHHHHHHHHHHHHhhccccccccCCHHHHHHHHHHHHHHHhcCHH
Confidence 245788999999999965311100 01123445555555 24778888899999999754443
Q ss_pred h
Q 005044 325 C 325 (717)
Q Consensus 325 ~ 325 (717)
.
T Consensus 394 ~ 394 (425)
T 3pst_A 394 L 394 (425)
T ss_dssp H
T ss_pred H
Confidence 3
No 205
>3gae_A Protein DOA1; UFD3, CDC48, armadillo repeat, nucleus, phosphoprotein, UBL conjugation pathway, WD repeat, nuclear protein; 1.60A {Saccharomyces cerevisiae}
Probab=33.03 E-value=57 Score=30.31 Aligned_cols=103 Identities=10% Similarity=0.042 Sum_probs=60.1
Q ss_pred CCCHHHHHHHHHHHHHhhcCChHHHHHHHHcCChHHHHHhh----cc----CChHHHHHHHHHHHHHhcCChhhHHHHHh
Q 005044 260 SEDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLL----SS----CCSESQREAALLLGQFAATDSDCKVHIVQ 331 (717)
Q Consensus 260 ~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~l~~L~~ll----~~----~~~~~~~~a~~~L~~l~~~~~~~~~~l~~ 331 (717)
+.++..+..++++++|+..+....++.+........+++.+ .+ .+..++..++..+.|++......+. +
T Consensus 101 ~~~~~~~ml~lR~l~NlF~~~~~g~~l~~~~~~~~~i~~~i~~~~~~~~~~~~~nl~iA~ATl~~N~av~~~~~~~---~ 177 (253)
T 3gae_A 101 NKNITLTMLTVRILVNCFNNENWGVKLLESNQVYKSIFETIDTEFSQASAKQSQNLAIAVSTLIFNYSALVTKGNS---D 177 (253)
T ss_dssp CSSHHHHHHHHHHHHHHTTCTTTHHHHHTSHHHHTTHHHHSCSCCTTCCHHHHHHHHHHHHHHHHHHHHHHHTSCS---C
T ss_pred CCchhHHHHHHHHHHHcccCCchHHHHHhcchhHHHHHHHHHHHhhhcccCCchhHHHHHHHHHHHHHHHHhhccc---h
Confidence 45678899999999999766442333333222233333333 11 2446777888889998742111000 1
Q ss_pred cCChHHHHHHhcC---------CCHHHHHHHHHHHHHhhcCCC
Q 005044 332 RGAVRPLIEMLQS---------PDVQLREMSAFALGRLAQDMH 365 (717)
Q Consensus 332 ~~~l~~L~~~l~~---------~~~~v~~~a~~~L~~l~~~~~ 365 (717)
......++..+.. .+++....++-+|++|...++
T Consensus 178 ~e~~~~l~~~i~~~~~~~e~~~~d~Ea~yR~LvAlGtL~~~~~ 220 (253)
T 3gae_A 178 LELLPIVADAINTKYGPLEEYQECEEAAYRLTVAYGNLATVEP 220 (253)
T ss_dssp TTHHHHHHHHHHTTTTTSHHHHHSHHHHHHHHHHHHHHHHHSG
T ss_pred HHHHHHHHHHHHHHhcccccccCCHHHHHHHHHHHHHHHhCcH
Confidence 2233445555542 367788888899999986443
No 206
>3ga1_A Nucleus accumbens-associated protein 1; BTB/POZ domain, phosphoprotein, repressor, transcri transcription regulation; 2.10A {Homo sapiens}
Probab=32.15 E-value=7.9 Score=31.72 Aligned_cols=32 Identities=0% Similarity=0.055 Sum_probs=23.0
Q ss_pred CChhcHHHHHHHHHHcCcHHHHHHHHHHHHHh
Q 005044 647 ISLENVSSMYELSEAFHAISLRHTCILYIMEH 678 (717)
Q Consensus 647 i~~~n~~~~~~~a~~~~~~~L~~~~~~~i~~~ 678 (717)
++.+|+..++..|..|+.+.|++.|.+|+.+.
T Consensus 96 i~~~~~~~ll~~A~~~~i~~l~~~C~~~L~~~ 127 (129)
T 3ga1_A 96 MNVGDQDLLMYTAGFLQIQEIMEKGTEFFLKV 127 (129)
T ss_dssp CCTTTHHHHHHHHHHTTBTTSSCC--------
T ss_pred cCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHh
Confidence 78899999999999999999999999998764
No 207
>3i3n_A Kelch-like protein 11; structural genomics, BTB, KLHL11A, SGC, structural genomics consortium, kelch repeat, secreted, protein binding; 2.60A {Homo sapiens} PDB: 4ap2_A* 4apf_A
Probab=29.86 E-value=69 Score=30.18 Aligned_cols=64 Identities=13% Similarity=0.141 Sum_probs=44.0
Q ss_pred ccchhhHHHHHHHHHhhChHhHHHHHHHHHHhcCC------------hhcHHHHHHHHHHc---CcHHHHHHHHHHHHHh
Q 005044 614 DVTLDIAQDLLRAADQYLLEGLKRLCEYTIAQDIS------------LENVSSMYELSEAF---HAISLRHTCILYIMEH 678 (717)
Q Consensus 614 ~~~~~~~~~ll~~A~~~~~~~l~~~c~~~l~~~i~------------~~n~~~~~~~a~~~---~~~~L~~~~~~~i~~~ 678 (717)
.++.+|+..++..|+.|+.+.|...|..++.++.. .+....++. .+.. +-..+.+.++.|+..+
T Consensus 138 ~l~~~n~~~i~~~A~~~~~~~L~~~~~~~i~~~f~~v~~~~~f~~L~~~~l~~lL~-~d~L~v~sE~~vf~av~~W~~~~ 216 (279)
T 3i3n_A 138 KLHLSNCVAIHSLAHMYTLSQLALKAADMIRRNFHKVIQDEEFYTLPFHLIRDWLS-DLEITVDSEEVLFETVLKWVQRN 216 (279)
T ss_dssp HCCTTTHHHHHHHHHHTTCHHHHHHHHHHHHHTHHHHTTSSGGGGSCHHHHHHHHT-CSSCCCSCHHHHHHHHHHHHHTT
T ss_pred cCCcchHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHhcCcChhcCCHHHHHHHhc-CcCCCCCCHHHHHHHHHHHHHcC
Confidence 36788999999999999999999999998876631 111122211 1111 1356888888888754
No 208
>1vsy_5 Proteasome activator BLM10; 20S proteasome BLM10, hydrolase, nucleus, phosphoprotein, PR proteasome, threonine protease; 3.00A {Saccharomyces cerevisiae} PDB: 3l5q_6
Probab=29.79 E-value=1.2e+02 Score=34.56 Aligned_cols=217 Identities=12% Similarity=0.028 Sum_probs=108.7
Q ss_pred hHHHHHhhccCChHHHHHHHHHHHHHhcCChhhHHHHHhcCChHHHHHHhcC----CCHHHHHHHHHHHH--HhhcCCCC
Q 005044 293 LQPVIGLLSSCCSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQS----PDVQLREMSAFALG--RLAQDMHN 366 (717)
Q Consensus 293 l~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~l~~~~~l~~L~~~l~~----~~~~v~~~a~~~L~--~l~~~~~~ 366 (717)
+.-|+++-.+...++|..|-.+|......-+..... ++|.+++.|+. .+.+-.+-|+.+|. .+...-.
T Consensus 135 l~dL~~Ls~S~Y~~VR~~AQ~~L~~~~~~~~gs~~~-----iip~ll~~L~~~~~~~~~~~iKGaLy~L~~k~~~~~~~- 208 (997)
T 1vsy_5 135 LVDIIQLATSLYPDIYKPAQGTLVHCMKQLVGSYGV-----VINKIIPSLEKAIKDHDYMKIQVILNVLLIKKIHRKLM- 208 (997)
T ss_dssp HHHHHHHHTSSCHHHHHHHHHHHHHHHTTBTTHHHH-----HHHHHHHHHHHHHHTCSCHHHHHHHHHTTSHHHHHHGG-
T ss_pred HHHHHHHhcCchHHHHHHHHHHHHHHHHhcccHHHH-----HHHHHHHHHhccccCCCHHHHHHHHHHHhhhhhhhHHh-
Confidence 555677777788999999999999887554444433 35667777643 34333344444433 1111000
Q ss_pred chhhHhcCChHHHHHhhcCCChhHHHHHHHHHHhccC---CCcchHHHHHhcCccccccchhHHhhhHHHHHHHHHHHHH
Q 005044 367 QAGIAHNGGLVPLLKLLDSKNGSLQHNAAFALYGLAD---NEDNVADFIRVGGVQKLQDGEFIVQATKDCVAKTLKRLEE 443 (717)
Q Consensus 367 ~~~l~~~~~l~~L~~ll~~~~~~v~~~a~~~L~~l~~---~~~~~~~l~~~~~i~~L~~~~~~~~~~~~~~~~~~~~l~~ 443 (717)
+..-.-...++.|++..+.+.+.++..+-.+...+.. .+.... ......+..+...................+-..
T Consensus 209 ~d~~~~~~~~~ali~~~~~dKpsI~~l~~~l~~~i~~~~~~p~~~~-~~~~~~~~~i~~~d~~i~~~~~~~~~~~~~~r~ 287 (997)
T 1vsy_5 209 TDYKDIGRLIFLLIECCRVNELEIGMYADKILTDIVIGIKIPSSVC-VISDQAFLPLAPPDGTINLQVEAVKLAKKKKRE 287 (997)
T ss_dssp GCHHHHHHHHHHHHHTCSCSSSSTTTHHHHHHHHHHTSCCCCCSCC-CCCGGGTGGGCCSCSSTTSHHHHHHHHTTHHHH
T ss_pred cChHHHHHHHHHHHHhCcCCCHHHHHHHHHHHHHHHhcccCchHHH-HHHHHHHhccCCCcHHHHHHHHHHHHHHHHHHH
Confidence 0111111234556666666666766655544444432 111110 001111111110000000000000001000001
Q ss_pred Hh---hhchHHHHHHHHhh-cc--hhHHHHHHHHHHhccCCCCCceeeecCCCHHHHHHHhcCCCchhhhhhHHHHHHhh
Q 005044 444 KI---HGRVLNHLLYLMRV-AE--KGVQRRVALALAHLCSPDDQRTIFIDGGGLELLLGLLGSTNPKQQLDGAVALFKLA 517 (717)
Q Consensus 444 ~~---~~~~~~~L~~ll~~-~~--~~v~~~a~~aL~~l~~~~~~~~~~~~~~~l~~L~~ll~~~~~~v~~~a~~~l~~L~ 517 (717)
.. -.++...|+.+.+. .+ -.....++..|.++....+ ......++..+++.+.+++|.+|..|..++..+.
T Consensus 288 ~~~~~~~~L~~~l~~~~~~~~h~~Wk~~~~~~~~l~~l~~r~d---~~~~~~~v~~~~~~l~~dhp~~R~~a~~~l~~il 364 (997)
T 1vsy_5 288 YYLSLLVDLQDKLLDKLDNEKDMGWKIRMFILRFVTQIQSNLE---SKPDKRAVFSIISQISTKHPEIIHLVVKSLLSTC 364 (997)
T ss_dssp HHHHHHHHHHHHHHHHHHSSTTCCSCHHHHHHHHHHHHTCCSS---CCCCHHHHHHHHGGGGGCCHHHHHHHHHHHTHHH
T ss_pred HHHHHHHHHHHHHHHHhccCCChhHHHHHHHHHHHHHHHhcCC---CCCCHHHHHHHHHhhcCCCHHHHHHHHHHHHHHH
Confidence 11 12345555666622 35 6677777888666654433 1234567888999999999999999998887766
Q ss_pred hc
Q 005044 518 NK 519 (717)
Q Consensus 518 ~~ 519 (717)
..
T Consensus 365 ~~ 366 (997)
T 1vsy_5 365 NK 366 (997)
T ss_dssp HH
T ss_pred HH
Confidence 54
No 209
>1dvp_A HRS, hepatocyte growth factor-regulated tyrosine kinase substrate; VHS, FYVE, zinc finger, superhelix, transferase; HET: CIT; 2.00A {Drosophila melanogaster} SCOP: a.118.9.2 g.50.1.1
Probab=29.58 E-value=3e+02 Score=24.63 Aligned_cols=70 Identities=4% Similarity=0.064 Sum_probs=49.7
Q ss_pred CcHHHHHhhcCCCHHHHHHHHHHHHHhhccC-hhhHHHHHhcCCHHHHHHHHcC-CCHHHHHHHHHHHHHhh
Q 005044 208 GIPPLVELLEFTDTKVQRAAAGALRTLAFKN-DENKNQIVECNALPTLILMLRS-EDSAIHYEAVGVIGNLV 277 (717)
Q Consensus 208 ~i~~L~~ll~~~~~~v~~~a~~~L~~L~~~~-~~~~~~~~~~g~i~~L~~ll~~-~~~~v~~~a~~~L~~l~ 277 (717)
++..|.+-|.+.++.++..|+..|-.+.... ......+.....+..|..++.+ .+..|+..++..+..-+
T Consensus 43 a~r~l~krl~~~n~~~~l~aL~Lle~~vkNcG~~f~~eva~~~fl~~l~~l~~~~~~~~Vk~kil~li~~W~ 114 (220)
T 1dvp_A 43 AFAAIKKKMNSPNPHSSCYSLLVLESIVKNCGAPVHEEVFTKENCEMFSSFLESTPHENVRQKMLELVQTWA 114 (220)
T ss_dssp HHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSHHHHHHHHSSHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHHHhccCHHHHHHHHhHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHH
Confidence 3457777888999999999999999998743 2344555555677777777753 45677777776665553
No 210
>1elk_A Target of MYB1; superhelix of helices, endocytosis/exocytosis complex; 1.50A {Homo sapiens} SCOP: a.118.9.2
Probab=29.48 E-value=2.5e+02 Score=23.55 Aligned_cols=70 Identities=9% Similarity=0.066 Sum_probs=51.0
Q ss_pred CcHHHHHhhc-CCCHHHHHHHHHHHHHhhccC-hhhHHHHHhcCCHHH-HHHHHcC---CCHHHHHHHHHHHHHhh
Q 005044 208 GIPPLVELLE-FTDTKVQRAAAGALRTLAFKN-DENKNQIVECNALPT-LILMLRS---EDSAIHYEAVGVIGNLV 277 (717)
Q Consensus 208 ~i~~L~~ll~-~~~~~v~~~a~~~L~~L~~~~-~~~~~~~~~~g~i~~-L~~ll~~---~~~~v~~~a~~~L~~l~ 277 (717)
++..|.+-++ +.++.++..|+..|-.+.... +.....+.....+.. |++++.. ++..|+..++..|..-+
T Consensus 54 a~ral~krl~~~~n~~v~l~AL~LLd~~vkNcG~~fh~eva~~~fl~e~Lvk~~~~k~~~~~~Vk~kil~li~~W~ 129 (157)
T 1elk_A 54 ALRAVKKRIVGNKNFHEVMLALTVLETCVKNCGHRFHVLVASQDFVESVLVRTILPKNNPPTIVHDKVLNLIQSWA 129 (157)
T ss_dssp HHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHSCHHHHHHHTSHHHHHHHTHHHHSTTTCCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhccCCCHHHHHHHHHHHHHHHHHhCHHHHHHHhhHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHHHH
Confidence 3457777786 478999999999999988743 455556666677887 7888742 34588888887776653
No 211
>4atg_A TAF6; transcription, TFIID; HET: NHE; 1.89A {Antonospora locustae}
Probab=29.48 E-value=1.2e+02 Score=26.74 Aligned_cols=129 Identities=13% Similarity=0.122 Sum_probs=0.0
Q ss_pred HHHHHhcCChhhHHHHHhCCChHHHHHHHhccccCCCccchhHHHHHHHHHHHHHhhcCchhhhHHHhcCCcHHHHHhhc
Q 005044 138 FALGLLAVKPEHQQLIVDNGALSHLVNLLKRHMDSNCSRAVNSVIRRAADAITNLAHENSSIKTRVRMEGGIPPLVELLE 217 (717)
Q Consensus 138 ~~L~~l~~~~~~~~~~~~~~~i~~L~~lL~~~~~~~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~ 217 (717)
.+|..|..++... ..+|.++.++.+.-..... +.......+.....|.. ++...-...-...+|.++.++-
T Consensus 27 ~aL~sL~~D~gL~------~LlPyf~~fI~~~v~~nl~--~l~~L~~lm~~~~ALl~-N~~l~lepYlH~LipsvLtCll 97 (196)
T 4atg_A 27 IAIECLEKESGLQ------QLVPYFIQHISELILKSFK--EAEVLKTCIALYFSLIK-NKHVFIDPYLHQILPSLLTCVI 97 (196)
T ss_dssp HHHHHHHHCSSCT------TTHHHHHHHHHHHHHHCTT--CHHHHHHHHHHHHHHHH-CTTCCCGGGHHHHHHHHHHHHH
T ss_pred HHHHHHhcCCChh------hhHHHHHHHHHHHHHhccC--CHHHHHHHHHHHHHHHc-CCCCChHHHHHHHHHHHHHHHH
Q ss_pred C---CCHHHHHHHHHHHHHhhccChhhHHHHHhcCCHHHHHHHHcCC--CHHHHHHHHHHHHHh
Q 005044 218 F---TDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSE--DSAIHYEAVGVIGNL 276 (717)
Q Consensus 218 ~---~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~g~i~~L~~ll~~~--~~~v~~~a~~~L~~l 276 (717)
. ....+|..|+..|..++. .-...-.-....++..+.+.+.++ +.....-|+..|..+
T Consensus 98 ~k~l~~~~LRd~AA~lL~~I~~-~~~~~y~~L~~RI~~tl~k~l~dp~~~l~t~YGAi~GL~~l 160 (196)
T 4atg_A 98 GKSIVDDDVRKMSADIVKYIYD-TYSRSYKTLAPRVLKTLKGVWMDPNRSEDSQYGALYCLSIL 160 (196)
T ss_dssp CTTCCCHHHHHHHHHHHHHHHH-HHTTTSTTHHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHH
T ss_pred hcccCHHHHHHHHHHHHHHHHH-HhCccCchHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHHh
No 212
>3hve_A Gigaxonin; ubiquitin, cytoplasm, cytoskeleton, disease mutation, kelch repeat, neurodegeneration, phosphoprotein, polymorphism, UBL conjugation; 2.80A {Homo sapiens} PDB: 3hve_B
Probab=28.64 E-value=48 Score=30.77 Aligned_cols=32 Identities=6% Similarity=0.281 Sum_probs=29.0
Q ss_pred CChhcHHHHHHHHHHcCcHHHHHHHHHHHHHh
Q 005044 647 ISLENVSSMYELSEAFHAISLRHTCILYIMEH 678 (717)
Q Consensus 647 i~~~n~~~~~~~a~~~~~~~L~~~~~~~i~~~ 678 (717)
++.+|+..++..|..|+.+.|.+.|.+|+.++
T Consensus 99 i~~~~v~~ll~~A~~l~i~~l~~~c~~~L~~~ 130 (256)
T 3hve_A 99 LNEDTIQDVVQAADLLLLTDLKTLCCEFLEGC 130 (256)
T ss_dssp CC-CCHHHHHHHHHHHTCHHHHHHHHHHHHHT
T ss_pred ccHhHHHHHHHHHHHHChHHHHHHHHHHHHhh
Confidence 67889999999999999999999999999865
No 213
>2b6c_A Hypothetical protein EF3068; structural genomis, DNA repair enzyme, structural genomics, protein structure initiative; HET: SO4; 2.10A {Enterococcus faecalis} SCOP: a.118.1.17
Probab=27.98 E-value=3.3e+02 Score=24.34 Aligned_cols=128 Identities=9% Similarity=-0.052 Sum_probs=78.4
Q ss_pred HHHhHHHHHHHHhc-C-ChhhHHHHHhCCChHHHHHHHhccccCCCccchhHHHHHHHHHHHHHhhcCchhhhHHHhcCC
Q 005044 131 EVEKGSAFALGLLA-V-KPEHQQLIVDNGALSHLVNLLKRHMDSNCSRAVNSVIRRAADAITNLAHENSSIKTRVRMEGG 208 (717)
Q Consensus 131 ~v~~~a~~~L~~l~-~-~~~~~~~~~~~~~i~~L~~lL~~~~~~~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~ 208 (717)
+.+..|+..+.... . .++. ++.+-.++...+ .|.+....+.++..++..++.. .
T Consensus 70 E~r~la~~~l~~~~~~~~~~~---------l~~~~~~l~~~~-------nWd~~D~~a~~~~~~~~~~~~~--------~ 125 (220)
T 2b6c_A 70 EYQYVAIDLALQNVQRFSLEE---------VVAFKAYVPQKA-------WWDSVDAWRKFFGSWVALHLTE--------L 125 (220)
T ss_dssp HHHHHHHHHHHHTGGGCCHHH---------HHHGGGGTTTTC-------SHHHHHHHHHHHHHHHHHSGGG--------H
T ss_pred HHHHHHHHHHHHHHhhCCHHH---------HHHHHHHhccCC-------cHHHHHHHHHHHHHHHHHChHH--------H
Confidence 78888888887664 2 2211 222233333322 2566666556666666544421 2
Q ss_pred cHHHHHhhcCCCHHHHHHHHHHHHHhhccChhhHHHHHhcCCHHHHHHHHcCCCHHHHHHHHHHHHHhhcCChHHHHHHH
Q 005044 209 IPPLVELLEFTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSEDSAIHYEAVGVIGNLVHSSPNIKKEVL 288 (717)
Q Consensus 209 i~~L~~ll~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~ 288 (717)
.+.+...+.+++.-+++.|+..+.... ....... .++.+-.++.+++.-|+....|+|..++..+++....++
T Consensus 126 ~~~i~~W~~s~~~w~rR~ai~~~l~~~--~~~~~~~-----~~~i~~~~~~d~~~yV~kavgW~Lr~~~k~~~~~v~~fl 198 (220)
T 2b6c_A 126 PTIFALFYGAENFWNRRVALNLQLMLK--EKTNQDL-----LKKAIIYDRTTEEFFIQKAIGWSLRQYSKTNPQWVEELM 198 (220)
T ss_dssp HHHHHHHTTCSSHHHHHHHHHTTTTCG--GGCCHHH-----HHHHHHHTTTCCCHHHHHHHHHHHHHHTTTCHHHHHHHH
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHHH--HCCCHHH-----HHHHHHHhCCChHHHHHHHHHHHHHHHHhhCHHHHHHHH
Confidence 345778888999999988877653322 1222111 134444577788999999999999999988887654444
Q ss_pred H
Q 005044 289 A 289 (717)
Q Consensus 289 ~ 289 (717)
.
T Consensus 199 ~ 199 (220)
T 2b6c_A 199 K 199 (220)
T ss_dssp H
T ss_pred h
Confidence 3
No 214
>3gae_A Protein DOA1; UFD3, CDC48, armadillo repeat, nucleus, phosphoprotein, UBL conjugation pathway, WD repeat, nuclear protein; 1.60A {Saccharomyces cerevisiae}
Probab=27.89 E-value=54 Score=30.47 Aligned_cols=106 Identities=8% Similarity=0.001 Sum_probs=59.4
Q ss_pred hHHHhHHHHHHHHhcCChh-hHHHHHhCCChHHHHHHHhccccCCCccchhHHHHHHHHHHHHHhhcCchhhhHHHhcCC
Q 005044 130 HEVEKGSAFALGLLAVKPE-HQQLIVDNGALSHLVNLLKRHMDSNCSRAVNSVIRRAADAITNLAHENSSIKTRVRMEGG 208 (717)
Q Consensus 130 ~~v~~~a~~~L~~l~~~~~-~~~~~~~~~~i~~L~~lL~~~~~~~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~ 208 (717)
|..+..+++++.|+..++. .+..+........++..+.+.-.+........++-.++..+.|++......+. +...
T Consensus 104 ~~~~ml~lR~l~NlF~~~~~g~~l~~~~~~~~~i~~~i~~~~~~~~~~~~~nl~iA~ATl~~N~av~~~~~~~---~~e~ 180 (253)
T 3gae_A 104 ITLTMLTVRILVNCFNNENWGVKLLESNQVYKSIFETIDTEFSQASAKQSQNLAIAVSTLIFNYSALVTKGNS---DLEL 180 (253)
T ss_dssp HHHHHHHHHHHHHHTTCTTTHHHHHTSHHHHTTHHHHSCSCCTTCCHHHHHHHHHHHHHHHHHHHHHHHTSCS---CTTH
T ss_pred hhHHHHHHHHHHHcccCCchHHHHHhcchhHHHHHHHHHHHhhhcccCCchhHHHHHHHHHHHHHHHHhhccc---hHHH
Confidence 4899999999999997777 45544432223334444322111000001116778888889998863211111 0122
Q ss_pred cHHHHHhhc---------CCCHHHHHHHHHHHHHhhccC
Q 005044 209 IPPLVELLE---------FTDTKVQRAAAGALRTLAFKN 238 (717)
Q Consensus 209 i~~L~~ll~---------~~~~~v~~~a~~~L~~L~~~~ 238 (717)
...++..+. ..+++....++.+|++|...+
T Consensus 181 ~~~l~~~i~~~~~~~e~~~~d~Ea~yR~LvAlGtL~~~~ 219 (253)
T 3gae_A 181 LPIVADAINTKYGPLEEYQECEEAAYRLTVAYGNLATVE 219 (253)
T ss_dssp HHHHHHHHHTTTTTSHHHHHSHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHhcccccccCCHHHHHHHHHHHHHHHhCc
Confidence 234444443 136788888888888888633
No 215
>2xpp_A IWS1, ECU08_0440; transcription, elongation, histone chaperone, RNA polymerase mRNA export; 1.74A {Encephalitozoon cuniculi} PDB: 2xpo_A 2xpn_A 2xpl_A
Probab=27.58 E-value=2e+02 Score=23.91 Aligned_cols=78 Identities=14% Similarity=0.176 Sum_probs=56.8
Q ss_pred hHHHHHHHHcCChHHHHHhhcc------CChHHHHHHHHHHHHHhcCChhhHHHHHhcCChHHHHHHhcC--CCHHHHHH
Q 005044 281 PNIKKEVLAAGALQPVIGLLSS------CCSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQS--PDVQLREM 352 (717)
Q Consensus 281 ~~~~~~~~~~g~l~~L~~ll~~------~~~~~~~~a~~~L~~l~~~~~~~~~~l~~~~~l~~L~~~l~~--~~~~v~~~ 352 (717)
...+..+++.|++..+-.+|.- ++..++.....+|.++- -....+.+.|+-..++.+-++ ..+..+..
T Consensus 51 ~~l~~~~ld~giL~~l~~WL~PLpDgsLP~~~Ir~~lL~~L~~lP----I~~e~Lk~SglGkvv~~l~k~~~et~~nk~l 126 (145)
T 2xpp_A 51 KALQESLLDEGILDEIKGWLEPLPDKSMPNIKIRKRLLDVLKTMK----IHKEHLVTSGVGKIVYFYSINPKESKEVRAS 126 (145)
T ss_dssp TTTHHHHHHTTHHHHHHHHHSCCTTSCCCCHHHHHHHHHHHHTSC----CCHHHHHHHCHHHHHHHHHHCTTSCHHHHHH
T ss_pred HHHHHHHHHcCHHHHHHHHhCcCCCCCCCCHHHHHHHHHHHHHCC----CCHHHhhcCCCCcchhhhhcCCccCHHHHHH
Confidence 3446788899999999999974 35678999999999883 234556666666666555544 57788888
Q ss_pred HHHHHHHhhc
Q 005044 353 SAFALGRLAQ 362 (717)
Q Consensus 353 a~~~L~~l~~ 362 (717)
|-..+...++
T Consensus 127 a~~Li~~WsR 136 (145)
T 2xpp_A 127 AKALVQKWTN 136 (145)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 8888877764
No 216
>3l3f_X Protein DOA1, DOA1/UFD3; armadillo-like repeat structure, nucleus, UBL conjugation PA protein binding; 1.90A {Saccharomyces cerevisiae}
Probab=26.93 E-value=1.1e+02 Score=30.04 Aligned_cols=130 Identities=12% Similarity=0.114 Sum_probs=74.2
Q ss_pred HHHHHHHHHhhcCchhhhHHHhcCCcHHHH-HhhcCCCHHHHHHHHHHHHHhhccChhhHHHHHhc-CCHHHHHHHHc--
Q 005044 184 RAADAITNLAHENSSIKTRVRMEGGIPPLV-ELLEFTDTKVQRAAAGALRTLAFKNDENKNQIVEC-NALPTLILMLR-- 259 (717)
Q Consensus 184 ~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~-~ll~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~-g~i~~L~~ll~-- 259 (717)
.++.+|+-+..+.+.. +.+..++ ..+.+..+..+..++++++|+-. .+.....+... .....+++.+.
T Consensus 182 P~LDLLRl~v~~~~~~-------~~l~~li~~~~~~~~~~n~MltlR~laNlF~-~~~~g~~ll~~~~~~~~i~~~i~~~ 253 (362)
T 3l3f_X 182 PAYDIVRLIVKKLPYS-------SDIKDYIEEGLGNKNITLTMLTVRILVNCFN-NENWGVKLLESNQVYKSIFETIDTE 253 (362)
T ss_dssp HHHHHHHHHGGGCSCG-------GGGHHHHHHHTTCSSHHHHHHHHHHHHHHTT-CTTTHHHHHTSHHHHTTHHHHSCSC
T ss_pred hHHHHHHHHhcCCChH-------HHHHHHHHHhcCCCChhHHHHHHHHHHHhcc-CcchHHHHHhcchhHHHHHHHHHHH
Confidence 3666666655533321 1233333 23335568899999999999986 44433333322 12233444331
Q ss_pred ------CCCHHHHHHHHHHHHHhhcCChHHHHHHHHcCChHHHHHhhc---------cCChHHHHHHHHHHHHHhcCChh
Q 005044 260 ------SEDSAIHYEAVGVIGNLVHSSPNIKKEVLAAGALQPVIGLLS---------SCCSESQREAALLLGQFAATDSD 324 (717)
Q Consensus 260 ------~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~l~~L~~ll~---------~~~~~~~~~a~~~L~~l~~~~~~ 324 (717)
..+..++..++..+.|++......+ ....++..+.+++. ..+.+....++.++++|....+.
T Consensus 254 ~~~~~~~~nkNl~IA~ATL~lNlAv~~~~~~---~~~el~~~l~~~l~~~~g~~E~~~~d~EA~yRlLVALGtL~~~~~~ 330 (362)
T 3l3f_X 254 FSQASAKQSQNLAIAVSTLIFNYSALVTKGN---SDLELLPIVADAINTKYGPLEEYQECEEAAYRLTVAYGNLATVEPT 330 (362)
T ss_dssp CSSCCHHHHHHHHHHHHHHHHHHHHHHHHTC---SCTTHHHHHHHHHHHTTTTSHHHHTSHHHHHHHHHHHHHHHHHCHH
T ss_pred hhhcccCCCchHHHHHHHHHHHHHHHHhccc---chHHHHHHHHHHHHhhccccccccCCHHHHHHHHHHHHHHHhcCHH
Confidence 1246788999999999965311100 00223445666665 34778888999999999754433
No 217
>1vsy_5 Proteasome activator BLM10; 20S proteasome BLM10, hydrolase, nucleus, phosphoprotein, PR proteasome, threonine protease; 3.00A {Saccharomyces cerevisiae} PDB: 3l5q_6
Probab=26.86 E-value=1.1e+02 Score=34.86 Aligned_cols=180 Identities=11% Similarity=0.062 Sum_probs=94.4
Q ss_pred CcHHHHHhhcCCCHHHHHHHHHHHHHhhccChhhHHHHHhcCCHHHHHHHHc----CCCHHHHHHHHHHHH-----Hhhc
Q 005044 208 GIPPLVELLEFTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLR----SEDSAIHYEAVGVIG-----NLVH 278 (717)
Q Consensus 208 ~i~~L~~ll~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~g~i~~L~~ll~----~~~~~v~~~a~~~L~-----~l~~ 278 (717)
.+..|+++..+..++||..|-.+|......-+..+..+ +|.+++.|+ +.+.+-..-|+.+|. ..+.
T Consensus 134 ll~dL~~Ls~S~Y~~VR~~AQ~~L~~~~~~~~gs~~~i-----ip~ll~~L~~~~~~~~~~~iKGaLy~L~~k~~~~~~~ 208 (997)
T 1vsy_5 134 LLVDIIQLATSLYPDIYKPAQGTLVHCMKQLVGSYGVV-----INKIIPSLEKAIKDHDYMKIQVILNVLLIKKIHRKLM 208 (997)
T ss_dssp HHHHHHHHHTSSCHHHHHHHHHHHHHHHTTBTTHHHHH-----HHHHHHHHHHHHHTCSCHHHHHHHHHTTSHHHHHHGG
T ss_pred HHHHHHHHhcCchHHHHHHHHHHHHHHHHhcccHHHHH-----HHHHHHHHhccccCCCHHHHHHHHHHHhhhhhhhHHh
Confidence 35577787888899999999999999886544444443 455555553 344455555555543 1222
Q ss_pred CChHHHHHHHHcCChHHHHHhhccCChHHHHHHHHHHHHHhcCC-----------------------------------h
Q 005044 279 SSPNIKKEVLAAGALQPVIGLLSSCCSESQREAALLLGQFAATD-----------------------------------S 323 (717)
Q Consensus 279 ~~~~~~~~~~~~g~l~~L~~ll~~~~~~~~~~a~~~L~~l~~~~-----------------------------------~ 323 (717)
.+.... ..+++.|+.....+.+.++.-+-.+...+.... .
T Consensus 209 ~d~~~~-----~~~~~ali~~~~~dKpsI~~l~~~l~~~i~~~~~~p~~~~~~~~~~~~~i~~~d~~i~~~~~~~~~~~~ 283 (997)
T 1vsy_5 209 TDYKDI-----GRLIFLLIECCRVNELEIGMYADKILTDIVIGIKIPSSVCVISDQAFLPLAPPDGTINLQVEAVKLAKK 283 (997)
T ss_dssp GCHHHH-----HHHHHHHHHTCSCSSSSTTTHHHHHHHHHHTSCCCCCSCCCCCGGGTGGGCCSCSSTTSHHHHHHHHTT
T ss_pred cChHHH-----HHHHHHHHHhCcCCCHHHHHHHHHHHHHHHhcccCchHHHHHHHHHHhccCCCcHHHHHHHHHHHHHHH
Confidence 222221 123455555555555555554443333332110 0
Q ss_pred hhHHHHHh--cCChHHHHHHhcC-CC--HHHHHHHHHHHHHhhcCCCCchhhHhcCChHHHHHhhcCCChhHHHHHHHHH
Q 005044 324 DCKVHIVQ--RGAVRPLIEMLQS-PD--VQLREMSAFALGRLAQDMHNQAGIAHNGGLVPLLKLLDSKNGSLQHNAAFAL 398 (717)
Q Consensus 324 ~~~~~l~~--~~~l~~L~~~l~~-~~--~~v~~~a~~~L~~l~~~~~~~~~l~~~~~l~~L~~ll~~~~~~v~~~a~~~L 398 (717)
..+....+ .++...++..+++ .. ......++..|.++....+ ......++..+++.+.++++.++..|..++
T Consensus 284 ~~r~~~~~~~~~L~~~l~~~~~~~~h~~Wk~~~~~~~~l~~l~~r~d---~~~~~~~v~~~~~~l~~dhp~~R~~a~~~l 360 (997)
T 1vsy_5 284 KKREYYLSLLVDLQDKLLDKLDNEKDMGWKIRMFILRFVTQIQSNLE---SKPDKRAVFSIISQISTKHPEIIHLVVKSL 360 (997)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHSSTTCCSCHHHHHHHHHHHHTCCSS---CCCCHHHHHHHHGGGGGCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhccCCChhHHHHHHHHHHHHHHHhcCC---CCCCHHHHHHHHHhhcCCCHHHHHHHHHHH
Confidence 00000100 1233333444422 34 5555565666555553221 112223456677888899999999988776
Q ss_pred Hh
Q 005044 399 YG 400 (717)
Q Consensus 399 ~~ 400 (717)
..
T Consensus 361 ~~ 362 (997)
T 1vsy_5 361 LS 362 (997)
T ss_dssp TH
T ss_pred HH
Confidence 33
No 218
>3zyq_A Hepatocyte growth factor-regulated tyrosine kinas substrate; signaling; 1.48A {Homo sapiens} PDB: 4avx_A*
Probab=26.06 E-value=81 Score=28.66 Aligned_cols=70 Identities=9% Similarity=0.136 Sum_probs=53.0
Q ss_pred hHHHHHhhccCChHHHHHHHHHHHHHhcCC-hhhHHHHHhcCChHHHHHHhcC-CCHHHHHHHHHHHHHhhc
Q 005044 293 LQPVIGLLSSCCSESQREAALLLGQFAATD-SDCKVHIVQRGAVRPLIEMLQS-PDVQLREMSAFALGRLAQ 362 (717)
Q Consensus 293 l~~L~~ll~~~~~~~~~~a~~~L~~l~~~~-~~~~~~l~~~~~l~~L~~~l~~-~~~~v~~~a~~~L~~l~~ 362 (717)
+..|.+-|.+.++.++..|+.+|..+..+. ......+....++..|..+++. .++.|+..++..+..++.
T Consensus 47 ~ral~krl~~~n~~v~l~aL~LLe~~vkNcG~~f~~eias~~fl~~l~~l~~~~~~~~Vk~kil~li~~W~~ 118 (226)
T 3zyq_A 47 VNSIKKKVNDKNPHVALYALEVMESVVKNCGQTVHDEVANKQTMEELKDLLKRQVEVNVRNKILYLIQAWAH 118 (226)
T ss_dssp HHHHHHHHTCSSHHHHHHHHHHHHHHHHHHCHHHHHHHSSHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHHHHhcchHHHHhhccHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHH
Confidence 556777788888999988888888776432 3455667777777778777754 578899999988888875
No 219
>3pst_A Protein DOA1; protein degradation, CDC48, ubiquitin, nuclear protein; 2.00A {Saccharomyces cerevisiae} PDB: 3psp_A
Probab=23.79 E-value=1.2e+02 Score=30.39 Aligned_cols=104 Identities=7% Similarity=0.001 Sum_probs=61.2
Q ss_pred hHHHhHHHHHHHHhcCChhhHHHHHhCC-ChHHHHHHHhccccCCCccchhHHHHHHHHHHHHHhhcCchhhhHHHhcCC
Q 005044 130 HEVEKGSAFALGLLAVKPEHQQLIVDNG-ALSHLVNLLKRHMDSNCSRAVNSVIRRAADAITNLAHENSSIKTRVRMEGG 208 (717)
Q Consensus 130 ~~v~~~a~~~L~~l~~~~~~~~~~~~~~-~i~~L~~lL~~~~~~~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~ 208 (717)
+..+..+++++.|+..++.....+.... ....++..+...-..........++..++..+.|++......+.. ...
T Consensus 276 ~an~MltlR~laNlF~~~~~g~~ll~~~~~~~~i~~~i~~~l~~~~~~~nkNl~IA~ATLllNlAv~~~~~~~~---~el 352 (425)
T 3pst_A 276 ITLTMLTVRILVNCFNNENWGVKLLESNQVYKSIFETIDTEFSQASAKQSQNLAIAVSTLIFNYSALVTKGNSD---LEL 352 (425)
T ss_dssp HHHHHHHHHHHHHHTTCTTTHHHHHTSHHHHHHHHHHSCCCCTTCCHHHHHHHHHHHHHHHHHHHHHHHHSCSC---TTH
T ss_pred hhHHHHHHHHHHHhcCCcchHHHHhhCchhHHHHHHHHHHHhhhcccCCCchHHHHHHHHHHHHHHHHhcccch---HHH
Confidence 4899999999999997777544444332 234555554322110000011167788888889988632211110 122
Q ss_pred cHHHHHhhc---------CCCHHHHHHHHHHHHHhhc
Q 005044 209 IPPLVELLE---------FTDTKVQRAAAGALRTLAF 236 (717)
Q Consensus 209 i~~L~~ll~---------~~~~~v~~~a~~~L~~L~~ 236 (717)
...+..++. ..+++....++.+|.+|..
T Consensus 353 ~~~l~e~l~~~~g~~E~~~~d~EA~yRlLVALGtLv~ 389 (425)
T 3pst_A 353 LPIVADAINTKYGPLEEYQECEEAAYRLTVAYGNLAT 389 (425)
T ss_dssp HHHHHHHHHHTTTTSHHHHTSHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhccccccccCCHHHHHHHHHHHHHHHh
Confidence 344555554 2478888889999999986
No 220
>1elk_A Target of MYB1; superhelix of helices, endocytosis/exocytosis complex; 1.50A {Homo sapiens} SCOP: a.118.9.2
Probab=23.58 E-value=1.6e+02 Score=24.87 Aligned_cols=70 Identities=13% Similarity=0.085 Sum_probs=51.6
Q ss_pred hHHHHHhhc-cCChHHHHHHHHHHHHHhcCC-hhhHHHHHhcCChHH-HHHHhcC---CCHHHHHHHHHHHHHhhc
Q 005044 293 LQPVIGLLS-SCCSESQREAALLLGQFAATD-SDCKVHIVQRGAVRP-LIEMLQS---PDVQLREMSAFALGRLAQ 362 (717)
Q Consensus 293 l~~L~~ll~-~~~~~~~~~a~~~L~~l~~~~-~~~~~~l~~~~~l~~-L~~~l~~---~~~~v~~~a~~~L~~l~~ 362 (717)
+..|.+-|. +.++.++..|+.+|..+..++ ......+.+..++.. |+.++.. ++..|+..++..+..++.
T Consensus 55 ~ral~krl~~~~n~~v~l~AL~LLd~~vkNcG~~fh~eva~~~fl~e~Lvk~~~~k~~~~~~Vk~kil~li~~W~~ 130 (157)
T 1elk_A 55 LRAVKKRIVGNKNFHEVMLALTVLETCVKNCGHRFHVLVASQDFVESVLVRTILPKNNPPTIVHDKVLNLIQSWAD 130 (157)
T ss_dssp HHHHHHHHTTCCCHHHHHHHHHHHHHHHHHSCHHHHHHHTSHHHHHHHTHHHHSTTTCCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhccCCCHHHHHHHHHHHHHHHHHhCHHHHHHHhhHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHHHHH
Confidence 456677776 467888888888888776554 556666777788887 7888742 356899999988888875
No 221
>1dvp_A HRS, hepatocyte growth factor-regulated tyrosine kinase substrate; VHS, FYVE, zinc finger, superhelix, transferase; HET: CIT; 2.00A {Drosophila melanogaster} SCOP: a.118.9.2 g.50.1.1
Probab=23.45 E-value=1e+02 Score=27.86 Aligned_cols=70 Identities=13% Similarity=0.121 Sum_probs=51.4
Q ss_pred hHHHHHhhccCChHHHHHHHHHHHHHhcCC-hhhHHHHHhcCChHHHHHHhcC-CCHHHHHHHHHHHHHhhc
Q 005044 293 LQPVIGLLSSCCSESQREAALLLGQFAATD-SDCKVHIVQRGAVRPLIEMLQS-PDVQLREMSAFALGRLAQ 362 (717)
Q Consensus 293 l~~L~~ll~~~~~~~~~~a~~~L~~l~~~~-~~~~~~l~~~~~l~~L~~~l~~-~~~~v~~~a~~~L~~l~~ 362 (717)
+..|.+-|.+.++.++..|+.+|..+..+. ......+....++..|..++.+ .+..|+..++..+...+.
T Consensus 44 ~r~l~krl~~~n~~~~l~aL~Lle~~vkNcG~~f~~eva~~~fl~~l~~l~~~~~~~~Vk~kil~li~~W~~ 115 (220)
T 1dvp_A 44 FAAIKKKMNSPNPHSSCYSLLVLESIVKNCGAPVHEEVFTKENCEMFSSFLESTPHENVRQKMLELVQTWAY 115 (220)
T ss_dssp HHHHHHHHTCSSHHHHHHHHHHHHHHHHHSHHHHHHHHSSHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHHHhccCHHHHHHHHhHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHH
Confidence 556677778888999999998888887654 3455666667778888887754 567888887777777664
No 222
>3nfq_A Transcription factor IWS1; SPN1, RNA polymerase II; 1.85A {Saccharomyces cerevisiae} PDB: 3o8z_A 3oak_A
Probab=21.70 E-value=3.2e+02 Score=23.31 Aligned_cols=78 Identities=21% Similarity=0.197 Sum_probs=57.3
Q ss_pred hHHHHHHHHcCChHHHHHhhcc------CChHHHHHHHHHHHHHhcCChhhHHHHHhcCChHHHHHHhcC--CCHHHHHH
Q 005044 281 PNIKKEVLAAGALQPVIGLLSS------CCSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQS--PDVQLREM 352 (717)
Q Consensus 281 ~~~~~~~~~~g~l~~L~~ll~~------~~~~~~~~a~~~L~~l~~~~~~~~~~l~~~~~l~~L~~~l~~--~~~~v~~~ 352 (717)
......+++.|++..+..+|.. ++..++.....+|.++. -....+...|+-..++-+-++ ..+..+..
T Consensus 66 ~~L~~~~ld~giL~~l~~WLePLpDgSLP~~~Ir~~lL~~L~~lP----I~~e~Lk~SglGkvV~~l~k~~~et~~nkrl 141 (170)
T 3nfq_A 66 ANLADTILDNNLLQSVRIWLEPLPDGSLPSFEIQKSLFAALNDLP----VKTEHLKESGLGRVVIFYTKSKRVEAQLARL 141 (170)
T ss_dssp GGGHHHHHHTTHHHHHHHHHSCCTTSCCCCHHHHHHHHHHHHTSC----CCHHHHHHHSHHHHHHHHHHCTTSCHHHHHH
T ss_pred HHHHHHHHHcchHHHHHHHhCcCCCCCCCcHHHHHHHHHHHHHCC----CCHHHHhhCCCCceeeehhcCCcccHHHHHH
Confidence 4556788899999999999964 35688999999999884 223456666655555555444 57888888
Q ss_pred HHHHHHHhhc
Q 005044 353 SAFALGRLAQ 362 (717)
Q Consensus 353 a~~~L~~l~~ 362 (717)
|-..+..+++
T Consensus 142 a~~Li~~WsR 151 (170)
T 3nfq_A 142 AEKLIAEWTR 151 (170)
T ss_dssp HHHHHHHHTC
T ss_pred HHHHHHHHHH
Confidence 8889988876
No 223
>1zx4_A P1 PARB, plasmid partition PAR B protein, PARB; translation; HET: CIT; 2.98A {Enterobacteria phage P1} PDB: 2ntz_A
Probab=20.79 E-value=3.9e+02 Score=23.33 Aligned_cols=105 Identities=10% Similarity=0.112 Sum_probs=61.0
Q ss_pred CCCHHHHHHHHHHH---------hcCccccchhhHHHHHHHHHhh---C--hHhHHHHHHHHHHhcCChhcHHHHHHHHH
Q 005044 595 NIRWEVFELMMRFI---------YTGSVDVTLDIAQDLLRAADQY---L--LEGLKRLCEYTIAQDISLENVSSMYELSE 660 (717)
Q Consensus 595 ~~~~~~~~~~l~~~---------Yt~~~~~~~~~~~~ll~~A~~~---~--~~~l~~~c~~~l~~~i~~~n~~~~~~~a~ 660 (717)
+++...+..++... |...-.++...+.-|..++..| + ++.|...|...+... +.- .
T Consensus 35 GiSr~~VSR~L~~A~~~~~lv~lfp~~~~ls~p~~~~L~k~~~~l~~~~~~l~eLi~~~~~~i~~~---------~~~-~ 104 (192)
T 1zx4_A 35 GLSQAKVTRALQAASAPEELVALFPVQSELTFSDYKTLCAVGDEMGNKNLEFDQLIQNISPEINDI---------LSI-N 104 (192)
T ss_dssp TCCHHHHHHHHHHHTSCHHHHTTCSCGGGCCHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHH---------HHC--
T ss_pred CcCHHHHHHHHHHhccchhhHHHcCCcccCccchHHHHHHHHHHhhhcCCCHHHHHHHHHHHHHHH---------hhc-c
Confidence 56666666655542 3333345556667777777777 4 355665554443321 100 0
Q ss_pred HcCcHHHHHHHHHHHHHhHHHh--------------cC-----------------CchhhhchhhcHHHHHHHHHhhcCC
Q 005044 661 AFHAISLRHTCILYIMEHFDKL--------------ST-----------------RPGHSNLIQRIIPEIHNYFAKALTK 709 (717)
Q Consensus 661 ~~~~~~L~~~~~~~i~~~~~~~--------------~~-----------------~~~f~~l~~~~~~~l~~~l~~~~~~ 709 (717)
.+..++.++..+.+|......+ .+ +=+|..+|.+..++|-+++.+.+.+
T Consensus 105 ~~~~~e~k~~I~~~i~~~~~~l~~~~~~~~~~~~~l~~F~~k~~~ARkk~kgr~~syef~rls~~~~~eid~~I~~~L~~ 184 (192)
T 1zx4_A 105 EMAEDEVKNKILRLITKEASLLTDKGSKDKSVVTELWKFEDKDRFARKRVKGRAFSYEFNRLSKELQEELDRMIGHILRK 184 (192)
T ss_dssp CCCHHHHHHHHHHHHHHHHHHHTHHHHTTCCEEEEEECCSSSSCEEEEEECSSEEEEEEESCCHHHHHHHHHHHHHHHHH
T ss_pred ccCCHHHHHHHHHHHHHHHHhhcCCCCCCcccchhhhhccCccceeeeeecCceEEEeecCCCHHHHHHHHHHHHHHHHH
Confidence 2445555666666666554322 10 0178889999999999999998843
No 224
>3l3f_X Protein DOA1, DOA1/UFD3; armadillo-like repeat structure, nucleus, UBL conjugation PA protein binding; 1.90A {Saccharomyces cerevisiae}
Probab=20.46 E-value=1.1e+02 Score=29.94 Aligned_cols=104 Identities=7% Similarity=0.001 Sum_probs=60.0
Q ss_pred hHHHhHHHHHHHHhcCChhhHHHHHhCC-ChHHHHHHHhccccCCCccchhHHHHHHHHHHHHHhhcCchhhhHHHhcCC
Q 005044 130 HEVEKGSAFALGLLAVKPEHQQLIVDNG-ALSHLVNLLKRHMDSNCSRAVNSVIRRAADAITNLAHENSSIKTRVRMEGG 208 (717)
Q Consensus 130 ~~v~~~a~~~L~~l~~~~~~~~~~~~~~-~i~~L~~lL~~~~~~~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~ 208 (717)
+..+..+++++.|+-.++.....+.... ....++..+...-..........++..++..+.|++......+.. ...
T Consensus 213 ~~n~MltlR~laNlF~~~~~g~~ll~~~~~~~~i~~~i~~~~~~~~~~~nkNl~IA~ATL~lNlAv~~~~~~~~---~el 289 (362)
T 3l3f_X 213 ITLTMLTVRILVNCFNNENWGVKLLESNQVYKSIFETIDTEFSQASAKQSQNLAIAVSTLIFNYSALVTKGNSD---LEL 289 (362)
T ss_dssp HHHHHHHHHHHHHHTTCTTTHHHHHTSHHHHTTHHHHSCSCCSSCCHHHHHHHHHHHHHHHHHHHHHHHHTCSC---TTH
T ss_pred hhHHHHHHHHHHHhccCcchHHHHHhcchhHHHHHHHHHHHhhhcccCCCchHHHHHHHHHHHHHHHHhcccch---HHH
Confidence 4899999999999997777544444322 123344444221100000011167788888889988632211110 122
Q ss_pred cHHHHHhhc---------CCCHHHHHHHHHHHHHhhc
Q 005044 209 IPPLVELLE---------FTDTKVQRAAAGALRTLAF 236 (717)
Q Consensus 209 i~~L~~ll~---------~~~~~v~~~a~~~L~~L~~ 236 (717)
...+...+. ..+++....++.+|.+|..
T Consensus 290 ~~~l~~~l~~~~g~~E~~~~d~EA~yRlLVALGtL~~ 326 (362)
T 3l3f_X 290 LPIVADAINTKYGPLEEYQECEEAAYRLTVAYGNLAT 326 (362)
T ss_dssp HHHHHHHHHHTTTTSHHHHTSHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhccccccccCCHHHHHHHHHHHHHHHh
Confidence 345555554 2578888889999999986
Done!