Query 005045
Match_columns 717
No_of_seqs 551 out of 4522
Neff 9.8
Searched_HMMs 29240
Date Mon Mar 25 13:43:01 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/005045.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/005045hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3omv_A RAF proto-oncogene seri 100.0 3.9E-51 1.3E-55 416.0 17.5 270 382-711 29-304 (307)
2 4aoj_A High affinity nerve gro 100.0 1.6E-50 5.5E-55 417.6 15.5 266 387-708 39-320 (329)
3 4asz_A BDNF/NT-3 growth factor 100.0 6.9E-51 2.4E-55 414.5 12.4 267 387-709 11-291 (299)
4 3fpq_A Serine/threonine-protei 100.0 4E-50 1.4E-54 405.6 17.1 250 389-700 25-282 (290)
5 4b9d_A Serine/threonine-protei 100.0 1.2E-50 4.2E-55 417.9 10.4 250 388-700 23-276 (350)
6 4fih_A Serine/threonine-protei 100.0 6.1E-50 2.1E-54 412.1 13.0 250 387-700 72-323 (346)
7 4gt4_A Tyrosine-protein kinase 100.0 4.9E-50 1.7E-54 410.0 11.6 270 378-705 17-304 (308)
8 4g3f_A NF-kappa-beta-inducing 100.0 1.3E-49 4.5E-54 408.4 14.1 260 387-709 56-318 (336)
9 4aw0_A HPDK1, 3-phosphoinositi 100.0 1.1E-49 3.7E-54 403.9 10.6 249 388-700 31-284 (311)
10 3rgz_A Protein brassinosteroid 100.0 5.8E-48 2E-52 449.2 25.7 356 11-374 270-724 (768)
11 3hyh_A Carbon catabolite-derep 100.0 6.8E-49 2.3E-53 392.9 14.7 246 388-701 12-263 (275)
12 4fie_A Serine/threonine-protei 100.0 8.3E-49 2.8E-53 413.6 14.5 251 386-700 148-400 (423)
13 3hmm_A TGF-beta receptor type- 100.0 1.4E-48 4.6E-53 400.7 14.9 283 388-708 2-298 (303)
14 4ase_A Vascular endothelial gr 100.0 5.5E-48 1.9E-52 401.8 16.0 279 376-708 51-348 (353)
15 3rgz_A Protein brassinosteroid 100.0 1.2E-46 4.2E-51 438.0 28.2 364 9-375 246-701 (768)
16 3ubd_A Ribosomal protein S6 ki 100.0 2E-48 6.7E-53 395.0 6.9 199 389-609 24-229 (304)
17 4g31_A Eukaryotic translation 100.0 6.4E-47 2.2E-51 386.1 14.0 261 388-700 4-279 (299)
18 3v47_A TOLL-like receptor 5B a 100.0 2E-44 6.7E-49 395.3 26.3 369 2-372 21-413 (455)
19 4b99_A Mitogen-activated prote 100.0 6.3E-46 2.2E-50 393.2 12.8 208 388-609 53-266 (398)
20 3t6q_A CD180 antigen; protein- 100.0 1.1E-43 3.7E-48 403.9 31.3 364 2-374 23-445 (606)
21 3vq2_A TLR4, TOLL-like recepto 100.0 6.2E-44 2.1E-48 405.9 28.3 363 2-374 22-540 (606)
22 4eco_A Uncharacterized protein 100.0 5E-44 1.7E-48 406.6 25.2 340 11-367 207-600 (636)
23 4eco_A Uncharacterized protein 100.0 6.5E-44 2.2E-48 405.7 25.1 339 21-375 194-586 (636)
24 2z63_A TOLL-like receptor 4, v 100.0 2.8E-43 9.5E-48 397.7 25.6 361 2-371 18-535 (570)
25 4f9c_A Cell division cycle 7-r 100.0 6.3E-45 2.2E-49 381.6 10.8 209 383-611 15-252 (361)
26 3t6q_A CD180 antigen; protein- 100.0 4.7E-42 1.6E-46 390.4 29.9 350 10-368 57-463 (606)
27 4ecn_A Leucine-rich repeat pro 100.0 2.2E-42 7.6E-47 399.1 27.4 340 20-374 435-825 (876)
28 4ecn_A Leucine-rich repeat pro 100.0 3.1E-42 1.1E-46 397.9 27.2 311 50-375 440-803 (876)
29 3v5w_A G-protein coupled recep 100.0 1.3E-43 4.5E-48 390.2 14.8 251 385-700 185-449 (689)
30 2z81_A CD282 antigen, TOLL-lik 100.0 7.4E-42 2.5E-46 384.1 27.6 361 2-371 16-514 (549)
31 3uto_A Twitchin; kinase, muscl 100.0 3.9E-43 1.3E-47 390.6 15.8 251 388-700 156-410 (573)
32 3j0a_A TOLL-like receptor 5; m 100.0 1.3E-41 4.4E-46 399.9 29.4 363 2-372 15-522 (844)
33 2qkw_B Protein kinase; three-h 100.0 5.3E-42 1.8E-46 357.5 22.8 285 378-707 28-315 (321)
34 3vq2_A TLR4, TOLL-like recepto 100.0 3.2E-41 1.1E-45 383.6 28.7 353 12-375 13-518 (606)
35 2z7x_B TOLL-like receptor 1, v 100.0 3.7E-41 1.3E-45 375.6 28.2 351 2-371 11-485 (520)
36 1ziw_A TOLL-like receptor 3; i 100.0 5E-41 1.7E-45 387.2 28.5 363 2-372 15-423 (680)
37 4g8a_A TOLL-like receptor 4; l 100.0 7.5E-41 2.6E-45 383.0 29.4 364 1-371 41-584 (635)
38 3j0a_A TOLL-like receptor 5; m 100.0 7.3E-41 2.5E-45 393.4 28.3 354 11-374 49-546 (844)
39 3v47_A TOLL-like receptor 5B a 100.0 1.1E-40 3.7E-45 365.5 27.4 351 11-372 11-388 (455)
40 3a79_B TLR6, VLRB.59, TOLL-lik 100.0 1.5E-40 5.1E-45 373.9 28.6 354 2-372 42-515 (562)
41 1ziw_A TOLL-like receptor 3; i 100.0 3.9E-40 1.3E-44 379.7 30.9 356 10-372 222-602 (680)
42 3s95_A LIMK-1, LIM domain kina 100.0 9.3E-42 3.2E-46 353.9 15.6 270 386-710 7-285 (310)
43 3uim_A Brassinosteroid insensi 100.0 1.3E-41 4.5E-46 355.5 15.4 286 377-705 18-309 (326)
44 3p86_A Serine/threonine-protei 100.0 2E-41 6.7E-46 350.5 14.8 272 376-709 24-300 (309)
45 3soc_A Activin receptor type-2 100.0 4.5E-41 1.5E-45 350.4 17.3 287 382-708 17-319 (322)
46 3fxz_A Serine/threonine-protei 100.0 2.5E-41 8.4E-46 348.0 15.0 252 385-700 16-269 (297)
47 2id5_A Lingo-1, leucine rich r 100.0 6.1E-40 2.1E-44 361.6 27.0 319 13-343 14-333 (477)
48 2id5_A Lingo-1, leucine rich r 100.0 7.2E-40 2.5E-44 361.0 26.6 341 2-351 22-364 (477)
49 3fe3_A MAP/microtubule affinit 100.0 3.4E-41 1.2E-45 351.1 13.7 254 381-701 7-265 (328)
50 2nru_A Interleukin-1 receptor- 100.0 1.8E-40 6.1E-45 343.8 18.7 283 377-707 13-306 (307)
51 3kul_A Ephrin type-A receptor 100.0 5.7E-41 1.9E-45 349.9 13.7 265 386-711 46-317 (325)
52 3a79_B TLR6, VLRB.59, TOLL-lik 100.0 6.3E-39 2.1E-43 360.7 31.2 323 10-347 76-514 (562)
53 2z7x_B TOLL-like receptor 1, v 100.0 3E-39 1E-43 360.2 27.5 324 9-347 44-485 (520)
54 3zgw_A Maternal embryonic leuc 100.0 7.1E-41 2.4E-45 350.5 12.9 254 383-701 4-261 (347)
55 2psq_A Fibroblast growth facto 100.0 2.6E-40 8.8E-45 350.9 17.1 270 385-710 77-367 (370)
56 3lb7_A RAF proto-oncogene seri 100.0 3.7E-40 1.3E-44 340.8 17.8 269 383-711 30-304 (307)
57 2z81_A CD282 antigen, TOLL-lik 100.0 1.5E-39 5.1E-44 365.4 24.2 353 14-373 9-469 (549)
58 3niz_A Rhodanese family protei 100.0 4.7E-40 1.6E-44 340.8 18.4 279 378-700 10-300 (311)
59 3ugc_A Tyrosine-protein kinase 100.0 8.3E-41 2.8E-45 344.2 11.6 280 387-709 8-293 (295)
60 3q4u_A Activin receptor type-1 100.0 3.2E-40 1.1E-44 340.9 15.7 269 386-705 5-300 (301)
61 3sxs_A Cytoplasmic tyrosine-pr 100.0 6.4E-41 2.2E-45 340.0 10.1 262 384-709 3-266 (268)
62 3vhe_A Vascular endothelial gr 100.0 3.3E-40 1.1E-44 349.9 15.8 281 375-709 8-357 (359)
63 4hcu_A Tyrosine-protein kinase 100.0 2.4E-40 8.1E-45 335.9 13.5 260 385-708 6-267 (269)
64 3op5_A Serine/threonine-protei 100.0 2E-40 6.8E-45 351.8 13.3 279 387-709 33-331 (364)
65 2z63_A TOLL-like receptor 4, v 100.0 6.5E-39 2.2E-43 362.0 26.2 356 13-375 10-491 (570)
66 3cbl_A C-FES, proto-oncogene t 100.0 7.9E-41 2.7E-45 356.2 9.6 265 382-708 107-375 (377)
67 1o6l_A RAC-beta serine/threoni 100.0 7.8E-40 2.7E-44 341.7 16.7 249 387-701 3-261 (337)
68 2izr_A Casein kinase I isoform 100.0 7.1E-40 2.4E-44 342.8 15.5 269 387-709 7-283 (330)
69 4eqm_A Protein kinase; transfe 100.0 7E-40 2.4E-44 336.7 15.1 262 387-708 9-276 (294)
70 3tki_A Serine/threonine-protei 100.0 3.8E-40 1.3E-44 343.1 13.2 254 387-701 5-262 (323)
71 2qol_A Ephrin receptor; recept 100.0 3.9E-40 1.3E-44 349.7 13.4 262 387-709 43-311 (373)
72 3gen_A Tyrosine-protein kinase 100.0 6E-40 2E-44 335.7 14.3 265 381-709 16-282 (283)
73 3gni_B Strad alpha; kinase fol 100.0 6.3E-40 2.2E-44 351.3 15.1 307 380-701 16-334 (389)
74 1tki_A Titin; serine kinase, m 100.0 1.6E-39 5.4E-44 338.0 17.4 252 387-701 3-258 (321)
75 2yab_A Death-associated protei 100.0 1.6E-39 5.6E-44 342.4 17.3 252 386-700 9-272 (361)
76 3brb_A Proto-oncogene tyrosine 100.0 1.1E-39 3.9E-44 338.7 15.7 295 364-710 9-311 (313)
77 4fr4_A YANK1, serine/threonine 100.0 2.8E-39 9.5E-44 342.4 18.9 250 386-700 12-271 (384)
78 1o6v_A Internalin A; bacterial 100.0 6.1E-38 2.1E-42 344.1 29.9 321 11-368 69-389 (466)
79 3h4j_B AMPK kdaid, SNF1-like p 100.0 9.2E-40 3.2E-44 340.8 14.6 248 386-701 6-259 (336)
80 3l9p_A Anaplastic lymphoma kin 100.0 5.5E-40 1.9E-44 348.2 12.9 268 386-709 68-347 (367)
81 1csn_A Casein kinase-1; phosph 100.0 1.2E-39 4.1E-44 336.1 14.9 273 386-711 7-287 (298)
82 4f0f_A Serine/threonine-protei 100.0 5.1E-39 1.7E-43 329.5 19.0 253 387-705 17-287 (287)
83 3og7_A AKAP9-BRAF fusion prote 100.0 1E-39 3.6E-44 334.8 13.8 268 380-707 15-288 (289)
84 2ivs_A Proto-oncogene tyrosine 100.0 1E-39 3.5E-44 339.4 13.6 272 381-708 15-312 (314)
85 1k9a_A Carboxyl-terminal SRC k 100.0 1.5E-39 5.1E-44 354.3 15.3 261 381-709 185-447 (450)
86 3kfa_A Tyrosine-protein kinase 100.0 2.5E-39 8.7E-44 331.9 16.2 269 380-711 4-275 (288)
87 3txo_A PKC-L, NPKC-ETA, protei 100.0 6.3E-40 2.1E-44 344.7 11.7 248 387-700 21-280 (353)
88 2zv2_A Calcium/calmodulin-depe 100.0 2.2E-39 7.7E-44 334.0 15.4 251 387-700 11-292 (298)
89 1mp8_A Focal adhesion kinase 1 100.0 1.6E-39 5.4E-44 332.1 14.0 266 380-709 6-278 (281)
90 4euu_A Serine/threonine-protei 100.0 2.6E-39 9E-44 336.8 15.6 284 386-705 6-307 (319)
91 1rjb_A FL cytokine receptor; k 100.0 2.2E-39 7.7E-44 341.3 15.0 279 383-716 39-343 (344)
92 1qcf_A Haematopoetic cell kina 100.0 5.6E-40 1.9E-44 358.3 10.7 265 379-707 178-444 (454)
93 1t4h_A Serine/threonine-protei 100.0 6.5E-39 2.2E-43 329.2 17.9 254 386-700 23-282 (290)
94 2eva_A TAK1 kinase - TAB1 chim 100.0 3.9E-39 1.3E-43 333.3 16.0 260 387-711 6-267 (307)
95 2y0a_A Death-associated protei 100.0 5E-39 1.7E-43 335.3 16.9 252 386-700 8-271 (326)
96 1fot_A TPK1 delta, CAMP-depend 100.0 3.5E-39 1.2E-43 334.4 15.5 245 387-700 4-258 (318)
97 2c30_A Serine/threonine-protei 100.0 2.3E-39 7.8E-44 337.1 14.2 248 390-701 46-295 (321)
98 1kob_A Twitchin; kinase, intra 100.0 5.7E-39 2E-43 341.3 17.5 252 388-701 50-305 (387)
99 3soa_A Calcium/calmodulin-depe 100.0 5.1E-39 1.8E-43 347.5 17.2 253 386-700 8-267 (444)
100 2bdw_A Hypothetical protein K1 100.0 3.6E-39 1.2E-43 340.9 15.5 258 381-701 21-285 (362)
101 3qup_A Tyrosine-protein kinase 100.0 1.4E-39 4.8E-44 339.6 12.1 278 380-709 14-300 (323)
102 1ob3_A PFPK5, cell division co 100.0 1.6E-39 5.6E-44 333.2 12.4 267 389-700 2-280 (288)
103 3c0i_A Peripheral plasma membr 100.0 1.7E-39 5.8E-44 342.4 12.6 254 388-700 23-286 (351)
104 4dc2_A Protein kinase C IOTA t 100.0 2.1E-39 7.1E-44 344.5 13.0 202 386-609 49-256 (396)
105 4hgt_A Casein kinase I isoform 100.0 3.2E-39 1.1E-43 332.6 13.8 274 386-711 6-284 (296)
106 2pmi_A Negative RE, cyclin-dep 100.0 2.7E-39 9.3E-44 336.2 13.3 279 387-700 3-293 (317)
107 2v62_A Serine/threonine-protei 100.0 1.6E-39 5.5E-44 342.1 11.6 271 388-706 36-327 (345)
108 3poz_A Epidermal growth factor 100.0 2.7E-39 9.3E-44 337.7 13.2 259 387-708 13-279 (327)
109 3uzp_A CKI-delta, CKID, casein 100.0 4.4E-39 1.5E-43 331.5 14.4 273 387-711 7-284 (296)
110 3f3z_A Calcium/calmodulin-depe 100.0 6.6E-39 2.3E-43 326.8 15.5 253 386-701 6-262 (277)
111 3g2f_A Bone morphogenetic prot 100.0 3.2E-39 1.1E-43 338.9 13.6 300 384-715 8-326 (336)
112 2w4o_A Calcium/calmodulin-depe 100.0 7.3E-39 2.5E-43 337.1 16.3 255 382-700 46-305 (349)
113 3lxl_A Tyrosine-protein kinase 100.0 4.9E-40 1.7E-44 343.7 7.1 280 387-710 21-306 (327)
114 3o0g_A Cell division protein k 100.0 6E-39 2.1E-43 329.7 15.1 272 389-700 2-282 (292)
115 2y94_A 5'-AMP-activated protei 100.0 1.2E-38 4.2E-43 346.6 18.3 248 386-700 13-266 (476)
116 3tt0_A Basic fibroblast growth 100.0 6.5E-39 2.2E-43 342.2 15.8 270 384-709 64-354 (382)
117 2pvf_A Fibroblast growth facto 100.0 3.9E-39 1.3E-43 337.8 13.9 273 385-713 31-324 (334)
118 1t46_A HOMO sapiens V-KIT hard 100.0 8.2E-39 2.8E-43 332.3 16.1 271 384-709 18-309 (313)
119 3a8x_A Protein kinase C IOTA t 100.0 6.2E-39 2.1E-43 336.5 15.1 201 387-609 7-213 (345)
120 3lxp_A Non-receptor tyrosine-p 100.0 5.6E-39 1.9E-43 334.1 14.5 277 385-711 26-314 (318)
121 1u59_A Tyrosine-protein kinase 100.0 5.4E-39 1.9E-43 329.2 14.0 266 384-711 4-276 (287)
122 3dtc_A Mitogen-activated prote 100.0 6.4E-39 2.2E-43 325.8 14.1 252 386-705 4-271 (271)
123 1rdq_E PKA C-alpha, CAMP-depen 100.0 7.5E-39 2.6E-43 336.3 15.1 246 386-700 38-293 (350)
124 3t9t_A Tyrosine-protein kinase 100.0 3.4E-39 1.2E-43 327.1 12.1 260 385-708 4-265 (267)
125 3ork_A Serine/threonine protei 100.0 1.2E-39 4.1E-44 338.1 8.8 266 386-706 9-280 (311)
126 1xjd_A Protein kinase C, theta 100.0 2.3E-39 7.9E-44 339.0 10.9 249 385-699 13-268 (345)
127 3p1a_A MYT1 kinase, membrane-a 100.0 7.9E-39 2.7E-43 331.7 14.8 245 388-700 56-304 (311)
128 3c1x_A Hepatocyte growth facto 100.0 2.8E-39 9.5E-44 342.7 11.6 269 386-713 86-361 (373)
129 1qpc_A LCK kinase; alpha beta 100.0 4E-39 1.4E-43 328.8 12.3 265 382-710 6-272 (279)
130 4g8a_A TOLL-like receptor 4; l 100.0 3.4E-37 1.2E-41 352.6 29.5 377 13-392 34-580 (635)
131 2xir_A Vascular endothelial gr 100.0 1.2E-38 4E-43 331.6 15.8 279 378-710 16-313 (316)
132 1luf_A Muscle-specific tyrosin 100.0 2.3E-39 7.9E-44 341.1 10.5 272 383-710 41-338 (343)
133 4aw2_A Serine/threonine-protei 100.0 7.7E-39 2.6E-43 344.7 14.8 262 380-700 65-338 (437)
134 1opk_A P150, C-ABL, proto-onco 100.0 3.8E-39 1.3E-43 354.9 12.7 263 381-706 212-477 (495)
135 3dbq_A Dual specificity protei 100.0 3.7E-39 1.3E-43 339.0 12.0 255 384-701 4-274 (343)
136 3kmu_A ILK, integrin-linked ki 100.0 6.3E-39 2.1E-43 325.8 13.3 257 385-707 6-270 (271)
137 1o6v_A Internalin A; bacterial 100.0 5E-37 1.7E-41 336.8 29.3 324 11-371 47-370 (466)
138 3g33_A Cell division protein k 100.0 5.5E-39 1.9E-43 332.7 12.9 280 387-700 7-296 (308)
139 2ac3_A MAP kinase-interacting 100.0 7.8E-39 2.7E-43 332.9 14.0 274 387-700 10-295 (316)
140 2wqm_A Serine/threonine-protei 100.0 2.7E-38 9.4E-43 327.8 17.9 269 385-711 28-301 (310)
141 3f66_A Hepatocyte growth facto 100.0 9.4E-39 3.2E-43 329.4 14.3 268 384-710 20-294 (298)
142 2x4f_A Myosin light chain kina 100.0 1.4E-38 4.7E-43 337.6 15.9 247 392-700 92-342 (373)
143 2i0e_A Protein kinase C-beta I 100.0 6.6E-39 2.2E-43 336.7 13.0 201 387-609 18-224 (353)
144 1fmk_A C-SRC, P60-SRC, tyrosin 100.0 2.5E-39 8.6E-44 352.7 10.1 265 379-707 174-440 (452)
145 3rp9_A Mitogen-activated prote 100.0 6.3E-39 2.1E-43 351.1 13.3 205 387-602 51-280 (458)
146 3o6n_A APL1; leucine-rich repe 100.0 1.8E-37 6.3E-42 332.4 24.4 314 32-371 43-356 (390)
147 3mdy_A Bone morphogenetic prot 100.0 3.2E-38 1.1E-42 331.5 17.8 278 384-709 32-333 (337)
148 2yex_A Serine/threonine-protei 100.0 2.6E-38 9E-43 322.2 16.5 252 388-700 6-261 (276)
149 3is5_A Calcium-dependent prote 100.0 5.3E-39 1.8E-43 328.8 11.4 254 387-700 20-278 (285)
150 3uc3_A Serine/threonine-protei 100.0 1.6E-38 5.3E-43 336.0 15.3 254 386-701 17-275 (361)
151 3cok_A Serine/threonine-protei 100.0 2.5E-38 8.6E-43 322.7 16.4 250 386-700 8-262 (278)
152 2eue_A Carbon catabolite derep 100.0 9.8E-39 3.3E-43 325.1 13.2 246 388-701 12-263 (275)
153 2w1i_A JAK2; chromosomal rearr 100.0 5.4E-39 1.8E-43 335.5 11.5 281 387-710 39-325 (326)
154 3cc6_A Protein tyrosine kinase 100.0 1.2E-38 4.2E-43 325.5 13.9 264 383-710 6-276 (281)
155 4fvq_A Tyrosine-protein kinase 100.0 2.9E-39 9.9E-44 331.7 9.2 253 387-708 6-276 (289)
156 4e5w_A Tyrosine-protein kinase 100.0 8.5E-39 2.9E-43 330.4 12.7 276 387-706 19-301 (302)
157 3qd2_B Eukaryotic translation 100.0 2.8E-38 9.5E-43 331.2 16.7 262 387-700 4-325 (332)
158 2vd5_A DMPK protein; serine/th 100.0 6.3E-39 2.2E-43 343.0 12.0 211 379-609 51-273 (412)
159 4eut_A Serine/threonine-protei 100.0 1E-38 3.5E-43 342.2 13.6 288 386-708 6-310 (396)
160 2jii_A Serine/threonine-protei 100.0 2.6E-39 8.8E-44 341.7 8.8 273 388-711 41-340 (352)
161 1byg_A CSK, protein (C-termina 100.0 7.3E-39 2.5E-43 326.6 11.9 260 381-708 13-274 (278)
162 2h34_A Serine/threonine-protei 100.0 9.4E-39 3.2E-43 330.9 12.7 263 385-709 30-298 (309)
163 3kex_A Receptor tyrosine-prote 100.0 4.4E-39 1.5E-43 336.0 10.0 259 387-708 11-277 (325)
164 1xbb_A Tyrosine-protein kinase 100.0 7E-39 2.4E-43 329.1 11.3 270 382-714 9-286 (291)
165 1mqb_A Ephrin type-A receptor 100.0 1.9E-38 6.7E-43 332.0 14.9 267 386-713 41-315 (333)
166 3v8s_A RHO-associated protein 100.0 7.3E-39 2.5E-43 342.3 11.8 259 381-701 61-330 (410)
167 3o6n_A APL1; leucine-rich repe 100.0 3.9E-37 1.3E-41 329.9 25.3 309 11-345 46-354 (390)
168 3fdn_A Serine/threonine-protei 100.0 2E-38 6.9E-43 323.6 14.6 248 386-701 6-258 (279)
169 3a62_A Ribosomal protein S6 ki 100.0 1.1E-38 3.9E-43 332.7 12.8 249 386-700 14-276 (327)
170 2a2a_A Death-associated protei 100.0 4.2E-38 1.4E-42 328.0 16.9 252 386-700 9-272 (321)
171 3dls_A PAS domain-containing s 100.0 1.4E-38 4.8E-43 332.9 13.2 242 387-701 22-275 (335)
172 2zmd_A Dual specificity protei 100.0 9.5E-39 3.3E-43 341.2 12.1 254 385-701 52-321 (390)
173 3ttj_A Mitogen-activated prote 100.0 3E-38 1E-42 344.4 16.2 203 387-610 60-267 (464)
174 4agu_A Cyclin-dependent kinase 100.0 1.5E-38 5E-43 330.1 13.0 271 388-700 2-284 (311)
175 2i1m_A Macrophage colony-stimu 100.0 2.2E-38 7.4E-43 332.2 14.3 275 383-712 40-331 (333)
176 2buj_A Serine/threonine-protei 100.0 1.4E-38 4.8E-43 331.2 12.7 283 378-708 18-307 (317)
177 2r5t_A Serine/threonine-protei 100.0 9.7E-39 3.3E-43 337.8 11.5 248 386-699 35-288 (373)
178 2qr7_A Ribosomal protein S6 ki 100.0 6.5E-39 2.2E-43 335.9 9.7 251 387-701 20-278 (342)
179 3hko_A Calcium/calmodulin-depe 100.0 2.6E-38 8.8E-43 333.4 13.8 270 380-700 17-330 (345)
180 3kn6_A Ribosomal protein S6 ki 100.0 1.7E-38 5.8E-43 331.0 12.3 252 389-700 8-270 (325)
181 3kk8_A Calcium/calmodulin depe 100.0 6.4E-38 2.2E-42 320.8 16.3 252 387-701 4-262 (284)
182 3lzb_A Epidermal growth factor 100.0 1.2E-38 4E-43 332.6 11.0 259 387-708 13-279 (327)
183 3llt_A Serine/threonine kinase 100.0 7.6E-38 2.6E-42 331.7 17.1 209 376-609 22-262 (360)
184 3gbz_A Kinase, CMGC CDK; ssgci 100.0 1.7E-38 6E-43 331.9 11.9 273 384-700 29-318 (329)
185 3mwu_A Calmodulin-domain prote 100.0 3.3E-38 1.1E-42 347.8 14.8 252 387-701 20-277 (486)
186 1nxk_A MAP kinase-activated pr 100.0 8.3E-38 2.9E-42 334.8 17.4 255 387-701 59-322 (400)
187 3pls_A Macrophage-stimulating 100.0 1E-37 3.6E-42 321.6 17.4 268 388-713 20-293 (298)
188 3oz6_A Mitogen-activated prote 100.0 5.9E-38 2E-42 335.8 16.0 209 387-610 7-235 (388)
189 2acx_A G protein-coupled recep 100.0 5.4E-38 1.8E-42 345.8 16.0 252 386-700 181-444 (576)
190 3i6u_A CDS1, serine/threonine- 100.0 6.7E-38 2.3E-42 338.0 16.4 251 387-700 133-399 (419)
191 3eqc_A Dual specificity mitoge 100.0 6E-39 2.1E-43 340.1 8.0 201 387-610 31-234 (360)
192 2yfx_A Tyrosine-protein kinase 100.0 2.8E-38 9.5E-43 330.3 12.8 273 381-709 21-306 (327)
193 1p4o_A Insulin-like growth fac 100.0 9.2E-39 3.1E-43 333.3 9.0 274 378-707 14-299 (322)
194 1ua2_A CAK, cell division prot 100.0 3.7E-38 1.3E-42 331.9 13.7 278 384-701 5-292 (346)
195 1b6c_B TGF-B superfamily recep 100.0 6.1E-38 2.1E-42 330.1 15.3 272 387-709 40-338 (342)
196 2a19_B Interferon-induced, dou 100.0 1.1E-38 3.6E-43 326.5 9.2 260 387-714 9-281 (284)
197 3bz5_A Internalin-J, INLJ; leu 100.0 1.8E-36 6.1E-41 329.7 27.0 328 9-375 41-395 (457)
198 4ejn_A RAC-alpha serine/threon 100.0 1.5E-38 5.3E-43 346.4 10.8 249 386-700 145-404 (446)
199 3oja_B Anopheles plasmodium-re 100.0 1E-36 3.5E-41 344.5 25.8 315 32-372 49-363 (597)
200 4fmz_A Internalin; leucine ric 100.0 1.5E-36 5.1E-41 320.1 25.4 307 30-367 40-346 (347)
201 3sv0_A Casein kinase I-like; t 100.0 7.8E-38 2.7E-42 340.9 15.7 270 387-708 5-279 (483)
202 3nyv_A Calmodulin-domain prote 100.0 2.2E-38 7.6E-43 349.3 11.6 252 386-700 23-281 (484)
203 3lij_A Calcium/calmodulin depe 100.0 6.7E-38 2.3E-42 345.8 15.3 255 384-701 32-292 (494)
204 3gxj_A TGF-beta receptor type- 100.0 3.8E-40 1.3E-44 340.7 -2.5 270 388-708 2-298 (303)
205 3ll6_A Cyclin G-associated kin 100.0 5.2E-38 1.8E-42 329.8 13.7 281 376-710 15-311 (337)
206 2rku_A Serine/threonine-protei 100.0 7.2E-38 2.5E-42 322.0 14.4 250 386-701 12-266 (294)
207 3oja_B Anopheles plasmodium-re 100.0 8.9E-37 3.1E-41 345.0 24.6 309 11-345 52-360 (597)
208 2vgo_A Serine/threonine-protei 100.0 8.7E-38 3E-42 319.7 14.8 247 387-701 12-263 (284)
209 3q5i_A Protein kinase; CDPK, m 100.0 1.1E-37 3.9E-42 344.9 16.7 254 385-701 32-302 (504)
210 1fvr_A Tyrosine-protein kinase 100.0 3.3E-38 1.1E-42 329.8 11.7 264 388-710 24-303 (327)
211 3mtl_A Cell division protein k 100.0 1.4E-38 4.7E-43 331.9 8.7 274 389-700 2-281 (324)
212 3e7e_A HBUB1, BUB1A, mitotic c 100.0 5.1E-38 1.8E-42 333.5 13.3 264 381-710 57-342 (365)
213 4aaa_A Cyclin-dependent kinase 100.0 5.1E-38 1.8E-42 328.8 13.0 273 386-701 22-307 (331)
214 2j7t_A Serine/threonine-protei 100.0 2.5E-38 8.4E-43 326.9 10.4 254 385-700 15-275 (302)
215 1u5q_A Serine/threonine protei 100.0 3.1E-38 1.1E-42 331.8 11.2 247 387-701 52-306 (348)
216 2h6d_A 5'-AMP-activated protei 100.0 9.9E-38 3.4E-42 317.9 14.6 251 384-701 6-262 (276)
217 3pg1_A Mitogen-activated prote 100.0 7.2E-38 2.5E-42 332.2 14.1 280 380-700 13-316 (362)
218 3n9x_A Phosphotransferase; mal 100.0 4E-38 1.4E-42 341.3 12.0 211 387-608 24-254 (432)
219 2w5a_A Serine/threonine-protei 100.0 2.6E-38 8.9E-43 322.8 9.8 258 386-702 3-269 (279)
220 2jam_A Calcium/calmodulin-depe 100.0 8.2E-38 2.8E-42 323.3 13.5 250 387-700 7-261 (304)
221 3byv_A Rhoptry kinase; malaria 100.0 8.9E-39 3.1E-43 340.6 6.3 265 383-710 67-371 (377)
222 3qyz_A Mitogen-activated prote 100.0 1.5E-37 5.1E-42 329.6 15.6 288 382-700 20-313 (364)
223 3c4z_A Rhodopsin kinase; Ser/T 100.0 2.1E-37 7.3E-42 340.5 17.3 206 386-609 182-392 (543)
224 4fmz_A Internalin; leucine ric 100.0 6.6E-36 2.3E-40 315.2 28.0 302 11-343 45-346 (347)
225 2h8h_A Proto-oncogene tyrosine 100.0 1.1E-38 3.8E-43 354.5 7.0 264 379-706 257-522 (535)
226 2owb_A Serine/threonine-protei 100.0 7.9E-38 2.7E-42 327.8 13.1 250 386-701 38-292 (335)
227 1u46_A ACK-1, activated CDC42 100.0 3.8E-38 1.3E-42 323.7 10.4 263 386-709 15-286 (291)
228 2y7j_A Phosphorylase B kinase 100.0 1.2E-37 4.2E-42 329.8 14.6 250 388-700 93-359 (365)
229 2ozo_A Tyrosine-protein kinase 100.0 9.9E-38 3.4E-42 351.7 14.7 262 386-709 332-600 (613)
230 2vwi_A Serine/threonine-protei 100.0 7.2E-38 2.5E-42 323.6 12.4 272 385-700 11-287 (303)
231 3nsz_A CK II alpha, casein kin 100.0 1.4E-37 4.8E-42 325.5 14.6 281 387-700 34-319 (330)
232 3mi9_A Cell division protein k 100.0 3.3E-37 1.1E-41 325.6 17.6 211 387-610 15-233 (351)
233 1cm8_A Phosphorylated MAP kina 100.0 1.5E-37 5E-42 329.4 14.9 277 387-700 23-307 (367)
234 3bhy_A Death-associated protei 100.0 1.8E-37 6.1E-42 317.3 15.0 257 388-707 4-274 (283)
235 3cek_A Dual specificity protei 100.0 5.8E-38 2E-42 325.8 11.3 266 373-701 12-293 (313)
236 2clq_A Mitogen-activated prote 100.0 8E-38 2.7E-42 321.9 11.7 253 388-700 21-278 (295)
237 2x7f_A TRAF2 and NCK-interacti 100.0 1E-37 3.6E-42 326.0 12.5 265 378-700 13-286 (326)
238 3eb0_A Putative uncharacterize 100.0 1.5E-37 5E-42 332.0 13.8 283 384-707 2-330 (383)
239 2fst_X Mitogen-activated prote 100.0 1.6E-37 5.5E-42 328.6 13.5 279 386-700 26-311 (367)
240 3com_A Serine/threonine-protei 100.0 1.7E-37 5.7E-42 322.6 13.4 251 386-700 26-278 (314)
241 2ycf_A Serine/threonine-protei 100.0 2.1E-37 7.2E-42 322.9 14.2 251 387-700 8-274 (322)
242 3fme_A Dual specificity mitoge 100.0 1.6E-37 5.3E-42 318.9 13.0 256 385-700 3-266 (290)
243 2r3i_A Cell division protein k 100.0 2.5E-37 8.4E-42 319.0 14.4 270 388-700 2-283 (299)
244 2xrw_A Mitogen-activated prote 100.0 4.4E-37 1.5E-41 326.7 16.4 202 387-609 23-229 (371)
245 3a7i_A MST3 kinase, serine/thr 100.0 3.6E-37 1.2E-41 318.3 15.0 251 386-702 19-272 (303)
246 3pfq_A PKC-B, PKC-beta, protei 100.0 4.8E-37 1.6E-41 349.3 17.3 249 386-700 338-597 (674)
247 3an0_A Dual specificity mitoge 100.0 2.3E-37 7.8E-42 325.3 13.3 259 382-700 44-310 (340)
248 3lm5_A Serine/threonine-protei 100.0 3.1E-37 1.1E-41 322.1 14.1 263 378-701 17-288 (327)
249 2pml_X PFPK7, Ser/Thr protein 100.0 2.2E-37 7.6E-42 326.6 13.2 266 386-700 28-322 (348)
250 2i6l_A Mitogen-activated prote 100.0 1.8E-37 6.1E-42 323.3 11.8 280 387-700 9-305 (320)
251 2wtk_C Serine/threonine-protei 100.0 8.2E-37 2.8E-41 316.0 16.6 254 387-701 3-264 (305)
252 4fl3_A Tyrosine-protein kinase 100.0 2.2E-37 7.5E-42 349.6 13.2 252 395-709 375-633 (635)
253 2y4i_B KSR2, HKSR2, kinase sup 100.0 5.2E-38 1.8E-42 327.2 7.1 280 369-709 13-304 (319)
254 3kvw_A DYRK2, dual specificity 100.0 4.6E-37 1.6E-41 332.3 14.6 200 386-610 94-303 (429)
255 1phk_A Phosphorylase kinase; g 100.0 3.5E-37 1.2E-41 317.6 12.7 252 386-700 14-283 (298)
256 1vzo_A Ribosomal protein S6 ki 100.0 1.5E-37 5E-42 328.1 10.0 256 386-702 51-323 (355)
257 2wei_A Calmodulin-domain prote 100.0 3.3E-37 1.1E-41 315.9 11.9 251 388-701 21-277 (287)
258 1jl5_A Outer protein YOPM; leu 100.0 8.9E-35 3E-39 316.1 31.7 311 11-376 92-420 (454)
259 2ft3_A Biglycan; proteoglycan, 100.0 1.2E-35 4E-40 310.9 23.6 288 59-365 34-331 (332)
260 3q60_A ROP5B; pseudokinase, tr 100.0 1.4E-37 4.8E-42 330.8 8.8 268 385-708 58-362 (371)
261 4exu_A Mitogen-activated prote 100.0 5.4E-37 1.8E-41 326.0 13.3 278 387-701 40-324 (371)
262 1xku_A Decorin; proteoglycan, 100.0 2.4E-35 8.1E-40 308.5 25.6 291 57-365 30-330 (330)
263 1x8b_A WEE1HU, WEE1-like prote 100.0 2.1E-37 7.3E-42 317.6 9.8 247 386-700 8-279 (289)
264 2b9h_A MAP kinase FUS3, mitoge 100.0 1.2E-36 4.2E-41 321.6 15.5 291 386-700 8-305 (353)
265 2j0j_A Focal adhesion kinase 1 100.0 8.1E-37 2.8E-41 346.3 14.1 264 382-709 383-653 (656)
266 4e7w_A Glycogen synthase kinas 100.0 8.2E-37 2.8E-41 326.9 13.2 275 386-701 37-322 (394)
267 1wak_A Serine/threonine-protei 100.0 1.2E-36 4.2E-41 327.1 14.6 283 386-700 34-391 (397)
268 3bz5_A Internalin-J, INLJ; leu 100.0 4.4E-35 1.5E-39 318.8 26.5 312 19-368 27-353 (457)
269 1blx_A Cyclin-dependent kinase 100.0 1.5E-36 5E-41 317.3 14.3 280 383-700 5-296 (326)
270 1jl5_A Outer protein YOPM; leu 100.0 2.3E-35 8E-40 320.6 23.8 320 11-374 12-379 (454)
271 2ft3_A Biglycan; proteoglycan, 100.0 8.1E-35 2.8E-39 304.6 26.2 288 35-341 34-331 (332)
272 3e3p_A Protein kinase, putativ 100.0 2.4E-36 8.3E-41 320.2 14.6 285 384-700 18-314 (360)
273 3rgf_A Cyclin-dependent kinase 100.0 8.4E-37 2.9E-41 328.7 11.1 211 387-610 18-240 (405)
274 1j1b_A Glycogen synthase kinas 100.0 9.5E-37 3.3E-41 329.1 11.4 272 387-700 52-336 (420)
275 1z57_A Dual specificity protei 100.0 8.8E-37 3E-41 320.8 10.8 283 386-701 11-329 (339)
276 2vx3_A Dual specificity tyrosi 100.0 3.2E-36 1.1E-40 321.5 14.6 209 379-610 44-262 (382)
277 1zy4_A Serine/threonine-protei 100.0 2.8E-36 9.5E-41 311.6 13.7 262 387-700 4-283 (303)
278 3fhr_A MAP kinase-activated pr 100.0 2.5E-36 8.4E-41 316.3 12.9 258 386-701 25-288 (336)
279 3coi_A Mitogen-activated prote 100.0 6.7E-36 2.3E-40 315.7 15.4 276 387-700 22-305 (353)
280 1xku_A Decorin; proteoglycan, 100.0 4.5E-34 1.5E-38 298.7 28.7 289 35-341 32-330 (330)
281 3a99_A Proto-oncogene serine/t 100.0 1E-36 3.5E-41 317.2 7.6 247 380-700 34-293 (320)
282 2rio_A Serine/threonine-protei 100.0 5.3E-36 1.8E-40 324.7 13.5 266 381-700 6-295 (434)
283 3aln_A Dual specificity mitoge 100.0 3.1E-36 1.1E-40 314.8 11.0 263 383-701 16-286 (327)
284 2dyl_A Dual specificity mitoge 100.0 7.4E-36 2.5E-40 310.8 12.9 257 382-701 18-284 (318)
285 3qa8_A MGC80376 protein; kinas 100.0 1.1E-35 3.9E-40 330.2 15.1 281 386-706 11-308 (676)
286 2iwi_A Serine/threonine-protei 100.0 2E-36 6.8E-41 314.1 7.5 244 383-700 25-283 (312)
287 3uqc_A Probable conserved tran 100.0 1.7E-35 5.7E-40 302.1 13.7 235 387-709 29-267 (286)
288 2eu9_A Dual specificity protei 100.0 8.3E-36 2.8E-40 315.5 11.6 283 385-700 15-333 (355)
289 1q8y_A SR protein kinase; tran 100.0 1.1E-35 3.7E-40 316.9 11.0 279 387-700 17-333 (373)
290 3p23_A Serine/threonine-protei 100.0 2.5E-35 8.6E-40 318.3 12.5 254 383-700 18-283 (432)
291 2pzi_A Probable serine/threoni 100.0 6.7E-35 2.3E-39 334.2 15.5 250 387-710 78-331 (681)
292 1ogq_A PGIP-2, polygalacturona 100.0 4.1E-34 1.4E-38 296.0 15.5 253 82-369 50-307 (313)
293 3dzo_A Rhoptry kinase domain; 100.0 3E-34 1E-38 308.8 12.7 263 383-708 72-373 (413)
294 1z7x_W Ribonuclease inhibitor; 100.0 3.5E-37 1.2E-41 338.3 -10.8 357 11-369 4-413 (461)
295 1ogq_A PGIP-2, polygalacturona 100.0 1.5E-33 5E-38 291.9 16.4 249 58-341 50-302 (313)
296 3m2w_A MAP kinase-activated pr 100.0 4.3E-34 1.5E-38 294.4 12.0 237 387-701 15-257 (299)
297 2vuw_A Serine/threonine-protei 100.0 2.9E-34 9.8E-39 301.0 4.2 197 387-607 18-278 (336)
298 2z80_A TOLL-like receptor 2, v 100.0 5.5E-32 1.9E-36 285.6 19.5 279 30-343 27-314 (353)
299 1z7x_W Ribonuclease inhibitor; 100.0 1.7E-35 5.8E-40 324.8 -8.2 360 10-371 28-444 (461)
300 2z80_A TOLL-like receptor 2, v 100.0 5.8E-32 2E-36 285.5 17.3 280 13-320 34-315 (353)
301 1ozn_A Reticulon 4 receptor; N 100.0 1.7E-30 5.7E-35 265.6 22.2 254 13-278 14-268 (285)
302 2z66_A Variable lymphocyte rec 100.0 7.1E-31 2.4E-35 271.4 19.3 280 13-352 10-296 (306)
303 2z66_A Variable lymphocyte rec 100.0 3.4E-31 1.2E-35 273.8 16.4 214 2-246 18-236 (306)
304 3oja_A Leucine-rich immune mol 100.0 3E-32 1E-36 299.1 8.3 306 83-456 35-350 (487)
305 3zyi_A Leucine-rich repeat-con 100.0 3.8E-30 1.3E-34 280.9 24.5 253 59-371 55-307 (452)
306 3g06_A SSPH2 (leucine-rich rep 100.0 1E-29 3.5E-34 284.4 25.4 175 12-218 42-216 (622)
307 1ozn_A Reticulon 4 receptor; N 100.0 2.9E-30 9.8E-35 263.9 18.4 256 61-352 14-270 (285)
308 3zyj_A Leucine-rich repeat-con 100.0 9.9E-30 3.4E-34 276.6 23.0 248 59-343 44-292 (440)
309 3zyj_A Leucine-rich repeat-con 100.0 9.3E-30 3.2E-34 276.8 22.0 248 12-271 45-292 (440)
310 3zyi_A Leucine-rich repeat-con 100.0 9E-30 3.1E-34 278.0 21.9 248 12-271 56-303 (452)
311 3g06_A SSPH2 (leucine-rich rep 100.0 2.8E-29 9.7E-34 280.8 26.4 269 34-354 40-308 (622)
312 4fcg_A Uncharacterized protein 100.0 5.1E-29 1.8E-33 259.3 21.9 234 58-343 81-314 (328)
313 4fcg_A Uncharacterized protein 100.0 3.1E-29 1.1E-33 261.0 20.1 236 33-320 80-315 (328)
314 3o53_A Protein LRIM1, AGAP0063 100.0 3E-31 1E-35 275.3 4.7 257 60-338 12-270 (317)
315 3o53_A Protein LRIM1, AGAP0063 100.0 1.5E-30 5E-35 270.1 7.3 269 83-372 11-281 (317)
316 1wwl_A Monocyte differentiatio 100.0 3.6E-30 1.2E-34 266.5 7.7 256 54-343 39-309 (312)
317 1wwl_A Monocyte differentiatio 100.0 4.7E-30 1.6E-34 265.6 5.2 255 29-321 38-311 (312)
318 3oja_A Leucine-rich immune mol 99.9 1.6E-28 5.5E-33 269.5 9.4 236 56-313 32-269 (487)
319 2z62_A TOLL-like receptor 4, v 99.9 1.1E-26 3.8E-31 236.0 18.4 227 13-250 10-241 (276)
320 2z62_A TOLL-like receptor 4, v 99.9 2.3E-26 7.8E-31 233.7 20.2 221 39-271 12-237 (276)
321 3ogk_B Coronatine-insensitive 99.9 5.6E-29 1.9E-33 282.0 -0.4 350 11-369 113-528 (592)
322 2o6q_A Variable lymphocyte rec 99.9 8E-26 2.7E-30 228.7 22.9 200 12-215 18-217 (270)
323 4azs_A Methyltransferase WBDD; 99.9 7.9E-29 2.7E-33 275.6 0.0 184 397-605 242-437 (569)
324 2o6q_A Variable lymphocyte rec 99.9 2.1E-25 7E-30 225.7 22.8 202 35-246 17-218 (270)
325 1p9a_G Platelet glycoprotein I 99.9 1.6E-25 5.4E-30 228.5 19.0 206 126-370 6-211 (290)
326 1p9a_G Platelet glycoprotein I 99.9 3.6E-25 1.2E-29 225.9 20.9 197 11-215 11-207 (290)
327 3rfs_A Internalin B, repeat mo 99.9 3.8E-26 1.3E-30 231.3 12.9 226 11-256 20-245 (272)
328 3goz_A Leucine-rich repeat-con 99.9 2.8E-27 9.7E-32 250.2 3.3 266 38-326 2-304 (362)
329 3rfs_A Internalin B, repeat mo 99.9 1.2E-25 4E-30 227.7 14.3 227 36-307 21-247 (272)
330 3ogk_B Coronatine-insensitive 99.9 1.2E-27 4E-32 271.1 -0.7 344 12-364 140-548 (592)
331 2xwt_C Thyrotropin receptor; s 99.9 2.3E-25 7.8E-30 221.1 13.8 206 21-243 22-236 (239)
332 3goz_A Leucine-rich repeat-con 99.9 1.8E-26 6.1E-31 244.0 3.8 264 86-372 2-302 (362)
333 2p1m_B Transport inhibitor res 99.9 3.5E-27 1.2E-31 267.3 -2.9 348 11-367 106-519 (594)
334 2xwt_C Thyrotropin receptor; s 99.9 1.2E-24 4.1E-29 215.8 14.5 206 46-269 23-237 (239)
335 2ca6_A RAN GTPase-activating p 99.9 8.8E-27 3E-31 248.9 -1.4 193 176-371 91-320 (386)
336 3m19_A Variable lymphocyte rec 99.9 1.8E-23 6.1E-28 209.0 20.2 179 12-218 16-194 (251)
337 2ca6_A RAN GTPase-activating p 99.9 2.2E-26 7.7E-31 245.8 -1.2 272 36-322 11-319 (386)
338 3m19_A Variable lymphocyte rec 99.9 2.6E-23 9E-28 207.8 20.2 180 59-248 15-194 (251)
339 4glp_A Monocyte differentiatio 99.9 5.4E-24 1.8E-28 219.9 15.4 229 82-343 64-307 (310)
340 4ay9_X Follicle-stimulating ho 99.9 1.4E-23 4.8E-28 220.6 18.1 241 61-365 12-257 (350)
341 4glp_A Monocyte differentiatio 99.9 2.3E-24 8E-29 222.6 11.9 227 34-272 64-308 (310)
342 2ast_B S-phase kinase-associat 99.9 2.3E-25 8E-30 233.3 3.6 254 12-279 49-314 (336)
343 2ast_B S-phase kinase-associat 99.9 1.4E-24 4.6E-29 227.5 9.1 253 84-375 49-314 (336)
344 1h6u_A Internalin H; cell adhe 99.9 1.4E-23 4.6E-28 216.4 15.8 208 14-246 23-230 (308)
345 4ay9_X Follicle-stimulating ho 99.9 2.2E-23 7.7E-28 219.0 16.7 241 13-293 12-257 (350)
346 1h6u_A Internalin H; cell adhe 99.9 3.4E-23 1.2E-27 213.3 16.9 193 10-219 41-233 (308)
347 2p1m_B Transport inhibitor res 99.9 1.3E-25 4.4E-30 254.4 -4.9 347 10-366 130-543 (594)
348 2o6s_A Variable lymphocyte rec 99.9 7.6E-22 2.6E-26 191.1 15.9 183 11-204 8-190 (208)
349 2o6s_A Variable lymphocyte rec 99.9 7.7E-22 2.6E-26 191.1 15.2 170 3-180 19-190 (208)
350 3en9_A Glycoprotease, O-sialog 99.9 7.1E-24 2.4E-28 234.4 0.4 188 392-607 339-539 (540)
351 3cvr_A Invasion plasmid antige 99.9 4.1E-21 1.4E-25 212.1 19.1 195 59-282 60-254 (571)
352 2v9t_B SLIT homolog 2 protein 99.8 1.7E-20 5.8E-25 182.9 16.6 153 12-192 13-165 (220)
353 3cvr_A Invasion plasmid antige 99.8 1.3E-20 4.6E-25 208.0 17.7 188 35-257 60-254 (571)
354 2xot_A Amphoterin-induced prot 99.8 3.6E-21 1.2E-25 203.0 12.6 182 11-217 19-203 (361)
355 1h6t_A Internalin B; cell adhe 99.8 4E-21 1.4E-25 196.0 11.8 186 14-246 28-213 (291)
356 1m9s_A Internalin B; cell inva 99.8 3.1E-21 1.1E-25 215.6 11.5 191 11-218 22-212 (605)
357 1zar_A RIO2 kinase; serine kin 99.8 1E-21 3.4E-26 198.9 6.8 157 388-591 89-274 (282)
358 2v9t_B SLIT homolog 2 protein 99.8 1.8E-20 6.3E-25 182.7 15.2 153 61-217 14-166 (220)
359 2xot_A Amphoterin-induced prot 99.8 1E-20 3.5E-25 199.6 13.8 176 61-246 21-202 (361)
360 1m9s_A Internalin B; cell inva 99.8 8E-21 2.7E-25 212.3 12.2 205 81-333 20-224 (605)
361 1h6t_A Internalin B; cell adhe 99.8 2.9E-20 1E-24 189.6 14.6 168 11-193 47-214 (291)
362 2v70_A SLIT-2, SLIT homolog 2 99.8 6.3E-20 2.1E-24 178.9 15.8 152 61-216 14-166 (220)
363 2v70_A SLIT-2, SLIT homolog 2 99.8 6.2E-20 2.1E-24 178.9 15.7 153 13-193 14-167 (220)
364 3e6j_A Variable lymphocyte rec 99.8 1.7E-19 5.7E-24 177.1 17.1 152 13-193 22-173 (229)
365 3sb4_A Hypothetical leucine ri 99.8 1.3E-20 4.3E-25 196.3 9.5 223 105-361 100-328 (329)
366 3e6j_A Variable lymphocyte rec 99.8 2E-19 6.9E-24 176.6 17.4 154 60-218 21-174 (229)
367 1xeu_A Internalin C; cellular 99.8 6E-20 2E-24 184.3 9.2 170 81-321 18-187 (263)
368 3sb4_A Hypothetical leucine ri 99.8 2.4E-20 8.3E-25 194.1 5.4 286 11-337 26-328 (329)
369 4ezg_A Putative uncharacterize 99.8 1.1E-19 3.7E-24 174.2 9.1 153 31-216 41-194 (197)
370 1dce_A Protein (RAB geranylger 99.8 1.1E-21 3.9E-26 217.9 -5.5 203 79-336 346-566 (567)
371 1xeu_A Internalin C; cellular 99.8 9.8E-20 3.4E-24 182.7 8.7 167 11-193 20-186 (263)
372 4b8c_D Glucose-repressible alc 99.8 7.5E-20 2.6E-24 209.7 6.6 224 58-319 173-404 (727)
373 1dce_A Protein (RAB geranylger 99.8 1.6E-21 5.6E-26 216.6 -7.2 122 234-361 442-567 (567)
374 4ezg_A Putative uncharacterize 99.8 7.1E-19 2.4E-23 168.4 11.8 149 11-168 45-194 (197)
375 4fdw_A Leucine rich hypothetic 99.8 1.8E-17 6.2E-22 176.0 22.4 270 58-367 113-383 (401)
376 1w8a_A SLIT protein; signaling 99.8 1.4E-18 4.9E-23 165.4 11.6 134 11-147 9-143 (192)
377 4b8c_D Glucose-repressible alc 99.8 2.9E-19 1E-23 204.8 6.6 219 34-295 173-404 (727)
378 4fdw_A Leucine rich hypothetic 99.7 4.1E-17 1.4E-21 173.3 21.0 268 31-319 110-383 (401)
379 1w8a_A SLIT protein; signaling 99.7 3.8E-18 1.3E-22 162.5 11.3 132 236-371 11-143 (192)
380 2wfh_A SLIT homolog 2 protein 99.7 2.7E-17 9.1E-22 156.5 13.5 127 13-143 13-139 (193)
381 2ell_A Acidic leucine-rich nuc 99.7 2.5E-17 8.5E-22 153.3 12.6 133 33-168 23-160 (168)
382 2ell_A Acidic leucine-rich nuc 99.7 8.3E-18 2.9E-22 156.5 9.2 136 11-149 25-165 (168)
383 2wfh_A SLIT homolog 2 protein 99.7 4.9E-17 1.7E-21 154.7 13.7 127 37-192 13-139 (193)
384 2o6r_A Variable lymphocyte rec 99.7 1.4E-16 5E-21 149.5 14.2 132 11-145 8-139 (177)
385 2je0_A Acidic leucine-rich nuc 99.7 3.8E-17 1.3E-21 148.7 9.6 127 34-163 17-148 (149)
386 1zth_A RIO1 serine protein kin 99.7 5.4E-18 1.8E-22 169.5 4.2 138 389-550 47-219 (258)
387 4fs7_A Uncharacterized protein 99.7 8.5E-16 2.9E-20 163.9 21.5 319 21-364 58-376 (394)
388 2o6r_A Variable lymphocyte rec 99.7 9.9E-17 3.4E-21 150.6 12.5 133 235-371 9-141 (177)
389 2je0_A Acidic leucine-rich nuc 99.7 3.1E-17 1E-21 149.3 8.4 128 10-139 17-149 (149)
390 4fs7_A Uncharacterized protein 99.7 1.1E-15 3.7E-20 163.1 21.2 321 11-358 72-392 (394)
391 1a9n_A U2A', U2A'; complex (nu 99.6 3.3E-16 1.1E-20 146.8 9.0 133 29-167 14-152 (176)
392 1a9n_A U2A', U2A'; complex (nu 99.6 1.1E-15 3.7E-20 143.3 8.7 129 9-143 18-153 (176)
393 1ds9_A Outer arm dynein; leuci 99.6 6.5E-18 2.2E-22 161.8 -8.1 106 33-143 17-128 (198)
394 4gyi_A RIO2 kinase; protein ki 99.6 1.1E-15 3.6E-20 158.3 6.4 137 388-549 94-264 (397)
395 3g39_A Variable lymphocyte rec 99.6 1.2E-14 4.3E-19 135.0 11.6 109 260-371 11-119 (170)
396 4gt6_A Cell surface protein; l 99.6 1.4E-13 4.9E-18 146.7 21.4 321 23-366 52-390 (394)
397 1ds9_A Outer arm dynein; leuci 99.6 4.8E-17 1.6E-21 155.8 -5.3 136 55-196 15-157 (198)
398 3g39_A Variable lymphocyte rec 99.6 1.8E-14 6.3E-19 133.8 12.0 105 36-143 11-115 (170)
399 2r9u_A Variable lymphocyte rec 99.5 3.1E-14 1.1E-18 132.7 12.5 104 37-143 15-118 (174)
400 2r9u_A Variable lymphocyte rec 99.5 4.5E-14 1.5E-18 131.6 12.1 107 11-120 13-119 (174)
401 4gt6_A Cell surface protein; l 99.5 3.5E-12 1.2E-16 135.9 23.3 308 46-366 51-369 (394)
402 3un9_A NLR family member X1; l 99.4 1.1E-14 3.8E-19 153.0 -1.3 136 179-319 72-224 (372)
403 3un9_A NLR family member X1; l 99.4 3.1E-15 1.1E-19 157.3 -5.7 119 178-319 154-283 (372)
404 2ifg_A High affinity nerve gro 99.4 5.8E-13 2E-17 139.4 10.7 103 38-143 12-116 (347)
405 4h09_A Hypothetical leucine ri 99.3 9.9E-11 3.4E-15 124.0 22.9 288 30-338 42-341 (379)
406 2ifg_A High affinity nerve gro 99.3 3.3E-12 1.1E-16 133.7 10.9 105 13-120 11-117 (347)
407 4h09_A Hypothetical leucine ri 99.3 2.8E-10 9.5E-15 120.5 24.4 301 11-332 47-358 (379)
408 3tm0_A Aminoglycoside 3'-phosp 99.1 4.8E-11 1.7E-15 119.4 6.4 144 388-549 13-213 (263)
409 2ra8_A Uncharacterized protein 99.1 1.5E-10 5E-15 120.5 7.5 65 231-295 250-320 (362)
410 2ra8_A Uncharacterized protein 99.0 1.7E-10 5.8E-15 120.0 6.1 162 100-269 166-341 (362)
411 1nd4_A Aminoglycoside 3'-phosp 99.0 4.7E-10 1.6E-14 112.0 6.4 140 387-549 18-214 (264)
412 3dxp_A Putative acyl-COA dehyd 98.8 7.2E-09 2.5E-13 108.7 9.4 146 392-549 41-248 (359)
413 3sg8_A APH(2'')-ID; antibiotic 98.7 1.1E-09 3.9E-14 111.9 -1.7 195 394-606 25-287 (304)
414 1io0_A Tropomodulin; LRR prote 98.6 3.9E-09 1.3E-13 99.0 -0.1 113 30-142 32-163 (185)
415 1io0_A Tropomodulin; LRR prote 98.6 1.8E-08 6.3E-13 94.4 3.9 42 278-319 117-164 (185)
416 3rw6_A Nuclear RNA export fact 98.6 8.1E-09 2.8E-13 101.7 0.8 67 79-147 167-237 (267)
417 3rw6_A Nuclear RNA export fact 98.5 7.5E-09 2.5E-13 101.9 -1.6 105 30-136 137-257 (267)
418 3r70_A Aminoglycoside phosphot 98.4 4E-07 1.4E-11 93.5 7.3 136 390-549 38-237 (320)
419 3tdw_A Gentamicin resistance p 98.2 2.6E-06 8.9E-11 86.7 8.9 137 394-549 24-224 (306)
420 3e4g_A ATP synthase subunit S, 98.2 5.3E-07 1.8E-11 82.1 2.3 92 50-141 53-150 (176)
421 3e4g_A ATP synthase subunit S, 98.1 7E-07 2.4E-11 81.3 2.0 94 26-119 53-153 (176)
422 4gkh_A Aminoglycoside 3'-phosp 98.1 5E-06 1.7E-10 83.0 7.2 134 397-549 32-223 (272)
423 3d1u_A Putative fructosamine-3 98.0 4.9E-06 1.7E-10 83.6 5.4 76 393-477 19-97 (288)
424 3ovc_A Hygromycin-B 4-O-kinase 97.9 1.4E-05 4.7E-10 83.3 6.3 77 392-478 44-122 (362)
425 3ats_A Putative uncharacterize 97.7 1.9E-05 6.4E-10 82.3 4.6 85 393-479 24-122 (357)
426 1pgv_A TMD-1, tropomodulin TMD 97.7 2.2E-05 7.6E-10 72.8 4.1 69 176-246 38-111 (197)
427 1pgv_A TMD-1, tropomodulin TMD 97.5 2.2E-05 7.6E-10 72.8 1.5 118 199-318 37-169 (197)
428 2olc_A MTR kinase, methylthior 97.4 0.00011 3.8E-09 77.7 5.4 76 393-475 34-120 (397)
429 3rfe_A Platelet glycoprotein I 97.3 0.00043 1.5E-08 59.9 6.7 55 62-118 12-67 (130)
430 2q83_A YTAA protein; 2635576, 97.2 0.00064 2.2E-08 70.1 8.7 30 519-548 222-251 (346)
431 3f7w_A Putative fructosamine-3 97.2 0.00025 8.6E-09 71.2 5.3 79 390-477 16-97 (288)
432 3rfe_A Platelet glycoprotein I 97.1 0.00075 2.6E-08 58.4 6.1 58 310-370 12-71 (130)
433 3jr1_A Putative fructosamine-3 96.8 0.0029 1E-07 63.8 9.1 76 393-477 40-118 (312)
434 2pyw_A Uncharacterized protein 96.8 0.0017 5.8E-08 69.0 7.4 30 519-549 232-261 (420)
435 3dxq_A Choline/ethanolamine ki 96.7 0.0014 4.9E-08 66.1 6.0 30 519-549 173-202 (301)
436 2yle_A Protein spire homolog 1 96.7 0.0065 2.2E-07 56.5 9.2 98 476-601 34-131 (229)
437 3csv_A Aminoglycoside phosphot 96.7 0.003 1E-07 64.8 7.7 31 519-549 183-217 (333)
438 2ppq_A HSK, HK, homoserine kin 96.5 0.0026 8.8E-08 64.8 6.1 152 394-548 27-216 (322)
439 1zyl_A Hypothetical protein YI 96.5 0.0025 8.6E-08 65.1 5.9 80 395-477 32-114 (328)
440 2qg7_A Ethanolamine kinase PV0 96.0 0.0065 2.2E-07 64.9 6.2 74 394-477 113-188 (458)
441 3feg_A Choline/ethanolamine ki 96.0 0.0047 1.6E-07 64.1 4.7 146 394-549 55-254 (379)
442 1nw1_A Choline kinase (49.2 KD 95.8 0.0053 1.8E-07 65.2 4.5 73 394-477 78-159 (429)
443 3c5i_A Choline kinase; choline 95.4 0.012 4.1E-07 61.2 5.0 30 519-549 212-241 (369)
444 3i1a_A Spectinomycin phosphotr 95.1 0.023 7.8E-07 58.2 5.9 31 519-549 206-236 (339)
445 3f2s_A CK, chetk-alpha, cholin 94.8 0.028 9.4E-07 58.6 5.6 30 519-548 244-279 (401)
446 3mes_A Choline kinase; malaria 93.2 0.048 1.6E-06 57.4 3.6 30 519-549 262-291 (424)
447 4ann_A ESSB; membrane protein, 86.4 1.6 5.5E-05 40.5 7.3 117 443-608 43-159 (215)
448 4ano_A ESSB; membrane protein, 81.3 3.1 0.00011 38.7 6.9 83 443-548 48-132 (219)
449 2lz0_A Uncharacterized protein 65.7 13 0.00045 29.6 6.1 40 98-138 12-51 (100)
450 3g15_A CK, chetk-alpha, cholin 63.5 3.1 0.00011 43.2 2.5 30 520-549 245-280 (401)
451 2lz0_A Uncharacterized protein 62.1 20 0.00068 28.6 6.5 50 19-69 5-54 (100)
452 3cxl_A N-chimerin; SH2, RHO-GA 46.3 4.3 0.00015 43.0 0.0 60 392-454 145-213 (463)
453 1cja_A Protein (actin-fragmin 40.1 71 0.0024 31.7 7.6 147 391-549 71-237 (342)
454 3ls8_A Phosphatidylinositol 3- 28.5 73 0.0025 34.5 6.0 25 524-548 477-501 (614)
No 1
>3omv_A RAF proto-oncogene serine/threonine-protein kinas; serine/threonine-protein kinase, transferase; HET: SM5; 4.00A {Homo sapiens}
Probab=100.00 E-value=3.9e-51 Score=415.97 Aligned_cols=270 Identities=29% Similarity=0.471 Sum_probs=210.2
Q ss_pred ccccccccccccccccCcccccceEEEEeCCCchhhhHHhHhh--hhhHHHHHHHHHHHHhcCCCCceeEEEEeeccccC
Q 005045 382 SDISKSTDNFSKENLIGTGSFGSVYKGTLGDGTIVAIKVLKLQ--QQGALKSFIDECNALKSTRHRNILRVITACSSVDL 459 (717)
Q Consensus 382 ~~~~~~~~~y~~~~~ig~g~~g~v~~~~~~~~~~vavK~~~~~--~~~~~~~~~~e~~~l~~l~h~ni~~~~~~~~~~~~ 459 (717)
.+|....+++++.++||+|+||.||+|+++. .||||+++.. .....+.|.+|++++++++||||+++++++..
T Consensus 29 ~~Wei~~~~l~l~~~iG~G~fG~Vy~~~~~~--~vAvK~~~~~~~~~~~~~~f~~E~~il~~l~HpNIV~l~g~~~~--- 103 (307)
T 3omv_A 29 YYWEIEASEVMLSTRIGSGSFGTVYKGKWHG--DVAVKILKVVDPTPEQFQAFRNEVAVLRKTRHVNILLFMGYMTK--- 103 (307)
T ss_dssp CCCBCCTTSCCEEEECCCCSSSEEEEEESSS--EEEEEECCCSSCCHHHHHHHHHHHHHHTTCCCTTBCCEEEEECS---
T ss_pred cCcEEcHHHeEEeeEEeeCCCcEEEEEEECC--cEEEEEEEecCCCHHHHHHHHHHHHHHHhCCCCCEeeEEEEEEC---
Confidence 3455667889999999999999999999753 4899988643 24456789999999999999999999998632
Q ss_pred CCCceEEEEEecCCCCChhhhccCCCCCcccccccCHHHHHHHHHHHHHHHHHHHhcCCCCeeecCCCCCCEEeCCCCce
Q 005045 460 EGNDFKALVFEFMSNGNLDQWLHPSPAEHYQFKKLSVIQRLNIAIDVASALDYLHHHCDTPIAHCDLKPSNVLLDKDMTA 539 (717)
Q Consensus 460 ~~~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~dlkp~NIll~~~~~~ 539 (717)
+..++|||||++|+|.+++.... ..+++..+..++.||+.||+|||+. +||||||||+|||++.++.+
T Consensus 104 ---~~~~iVmEy~~gGsL~~~l~~~~------~~l~~~~~~~i~~qia~gL~yLH~~---~IiHRDlKp~NILl~~~~~~ 171 (307)
T 3omv_A 104 ---DNLAIVTQWCEGSSLYKHLHVQE------TKFQMFQLIDIARQTAQGMDYLHAK---NIIHRDMKSNNIFLHEGLTV 171 (307)
T ss_dssp ---SSCEEEEECCSSCBHHHHHHTSC------CCCCHHHHHHHHHHHHHHHHHHHHT---TCBCSCCCSSSEEEETTEEE
T ss_pred ---CeEEEEEEcCCCCCHHHHHhhcC------CCCCHHHHHHHHHHHHHHHHHHHHC---CccCCccCHHHEEECCCCcE
Confidence 35799999999999999997543 5699999999999999999999997 99999999999999999999
Q ss_pred EEeeeccchhcccccCCCCCCcceeecccccccccCCCccC----CCCCcccchhhHHHHHHHHHhCCCCCCCCCCCchh
Q 005045 540 HVGDFGLAKFLFEISDNPSKNQTVSIGLKGSIGYIPPEHMN----GQVSILGDIYSYGILLLEMFTGKRPTGDMFKDDFS 615 (717)
Q Consensus 540 kl~Dfg~~~~~~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~----~~~~~~sDvwslG~vl~elltg~~p~~~~~~~~~~ 615 (717)
||+|||+|+...... .........||+.|||||++. +.++.++|||||||++|||+||+.||.+......
T Consensus 172 Ki~DFGla~~~~~~~-----~~~~~~~~~GT~~ymAPE~l~~~~~~~y~~ksDVwS~Gvvl~Elltg~~Pf~~~~~~~~- 245 (307)
T 3omv_A 172 KIGDFGLATVKSRWS-----GSQQVEQPTGSVLWMAPEVIRMQDNNPFSFQSDVYSYGIVLYELMTGELPYSHINNRDQ- 245 (307)
T ss_dssp EECCCSSCBC-----------------CCCCTTSCCHHHHHCCSSCCCCHHHHHHHHHHHHHHHHHSSCTTTTCCCHHH-
T ss_pred EEeeccCceecccCC-----cceeecccccCCCccCHHHhhccCCCCCCcHHHhHhHHHHHHHHHHCCCCCCCCChHHH-
Confidence 999999998652211 112234467999999999974 3489999999999999999999999976433211
Q ss_pred hhHHHHhcCChhhhhhcCCCCCCCCCCcHHHHHHHHHHHHHHhhhhhhhcchhhhHHHHHHHHHHhhccCCCCcCCCCCH
Q 005045 616 IHMFVSMALPDHVMDILDPSMPLDEENDEEQIEEVIEEKEMMIHIDLEVNTKNKLEECFVSVLRIGLMCSTTSPRERIAM 695 (717)
Q Consensus 616 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~cl~~~p~~Rps~ 695 (717)
....+... ...+.... .+.+|+..+.+++.+||+.+|++||||
T Consensus 246 ~~~~~~~~-------~~~p~~~~------------------------------~~~~~~~~l~~li~~cl~~dP~~RPs~ 288 (307)
T 3omv_A 246 IIFMVGRG-------YASPDLSK------------------------------LYKNCPKAMKRLVADCVKKVKEERPLF 288 (307)
T ss_dssp HHHHHHTT-------CCCCCSTT------------------------------SCTTSCHHHHHHHHHHTCSSSTTSCCH
T ss_pred HHHHHhcC-------CCCCCccc------------------------------ccccchHHHHHHHHHHcCCCHhHCcCH
Confidence 11111111 11111110 123456778999999999999999999
Q ss_pred HHHHHHHHHHHHHHHh
Q 005045 696 NVVVNNLKTIRNCFLE 711 (717)
Q Consensus 696 ~eil~~l~~i~~~~~~ 711 (717)
+||++.|+.++..+++
T Consensus 289 ~ei~~~Le~l~~~lpk 304 (307)
T 3omv_A 289 PQILSSIELLQHSLPK 304 (307)
T ss_dssp HHHHHHHHHHHTTCCC
T ss_pred HHHHHHHHHHhccCCC
Confidence 9999999999876543
No 2
>4aoj_A High affinity nerve growth factor receptor; transferase, inhibitor; HET: V4Z; 2.75A {Homo sapiens}
Probab=100.00 E-value=1.6e-50 Score=417.61 Aligned_cols=266 Identities=25% Similarity=0.431 Sum_probs=206.1
Q ss_pred cccccccccccCcccccceEEEEeC------CCchhhhHHhHhhhhhHHHHHHHHHHHHhcCCCCceeEEEEeeccccCC
Q 005045 387 STDNFSKENLIGTGSFGSVYKGTLG------DGTIVAIKVLKLQQQGALKSFIDECNALKSTRHRNILRVITACSSVDLE 460 (717)
Q Consensus 387 ~~~~y~~~~~ig~g~~g~v~~~~~~------~~~~vavK~~~~~~~~~~~~~~~e~~~l~~l~h~ni~~~~~~~~~~~~~ 460 (717)
...+|.+.++||+|+||.||+|+++ +++.||||+++.......+.|.+|++++++++||||++++++|.
T Consensus 39 ~~~d~~l~~~LG~G~fG~Vy~a~~~~~~~~~~~~~vAvK~l~~~~~~~~~~f~~E~~il~~l~HpnIV~l~g~~~----- 113 (329)
T 4aoj_A 39 KRRDIVLKWELGEGAFGKVFLAECHNLLPEQDKMLVAVKALKEASESARQDFQREAELLTMLQHQHIVRFFGVCT----- 113 (329)
T ss_dssp CGGGEEEEEEEEECSSEEEEEEEESSSCC---CEEEEEEEESCCSHHHHHHHHHHHHHHTTCCCTTBCCEEEEEC-----
T ss_pred CHHHeEEEEEEccCCCcEEEEEEECCcccCCCCeEEEEEEECcCCHHHHHHHHHHHHHHHhCCCCCCCcEEEEEE-----
Confidence 3467889999999999999999853 57889999998766667788999999999999999999999964
Q ss_pred CCceEEEEEecCCCCChhhhccCCCCCc--------ccccccCHHHHHHHHHHHHHHHHHHHhcCCCCeeecCCCCCCEE
Q 005045 461 GNDFKALVFEFMSNGNLDQWLHPSPAEH--------YQFKKLSVIQRLNIAIDVASALDYLHHHCDTPIAHCDLKPSNVL 532 (717)
Q Consensus 461 ~~~~~~lv~e~~~~~~L~~~l~~~~~~~--------~~~~~~~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~dlkp~NIl 532 (717)
+.+..++||||+++|+|.++++...... .....+++.++..++.||+.||+|||+. +|+||||||+|||
T Consensus 114 ~~~~~~lV~Ey~~~G~L~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~~qia~gl~yLH~~---~iiHRDLKp~NIL 190 (329)
T 4aoj_A 114 EGRPLLMVFEYMRHGDLNRFLRSHGPDAKLLAGGEDVAPGPLGLGQLLAVASQVAAGMVYLAGL---HFVHRDLATRNCL 190 (329)
T ss_dssp SSSSEEEEEECCTTCBHHHHHHTSSCC-----------CCSCCHHHHHHHHHHHHHHHHHHHHT---TCCCSCCCGGGEE
T ss_pred ECCEEEEEEEcCCCCcHHHHHHhcCcccccccccccccCCCCCHHHHHHHHHHHHHHHHHHhcC---CeecccccHhhEE
Confidence 4458999999999999999997643211 1225689999999999999999999997 9999999999999
Q ss_pred eCCCCceEEeeeccchhcccccCCCCCCcceeecccccccccCCCccCC-CCCcccchhhHHHHHHHHHh-CCCCCCCCC
Q 005045 533 LDKDMTAHVGDFGLAKFLFEISDNPSKNQTVSIGLKGSIGYIPPEHMNG-QVSILGDIYSYGILLLEMFT-GKRPTGDMF 610 (717)
Q Consensus 533 l~~~~~~kl~Dfg~~~~~~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~-~~~~~sDvwslG~vl~ellt-g~~p~~~~~ 610 (717)
++.++.+||+|||+|+..... ..........||+.|+|||++.+ .++.++|||||||++|||+| |+.||....
T Consensus 191 l~~~~~~Ki~DFGla~~~~~~-----~~~~~~~~~~gt~~ymAPE~~~~~~~~~~sDvwS~Gvvl~Ellt~G~~Pf~~~~ 265 (329)
T 4aoj_A 191 VGQGLVVKIGDFGMSRDIYST-----DYYRVGGRTMLPIRWMPPESILYRKFTTESDVWSFGVVLWEIFTYGKQPWYQLS 265 (329)
T ss_dssp EETTTEEEECCCC---------------------CCCCGGGCCHHHHTTCCCCHHHHHHHHHHHHHHHHTTSCCTTCSSC
T ss_pred ECCCCcEEEcccccceeccCC-----CcceecCcccccccccChhhhcCCCCCccccccchHHHHHHHHcCCCCCCCCCC
Confidence 999999999999999865221 11222234568999999999665 58999999999999999999 999997642
Q ss_pred CCchhhhHHHHhcCChhhhhhcCCCCCCCCCCcHHHHHHHHHHHHHHhhhhhhhcchhhhHHHHHHHHHHhhccCCCCcC
Q 005045 611 KDDFSIHMFVSMALPDHVMDILDPSMPLDEENDEEQIEEVIEEKEMMIHIDLEVNTKNKLEECFVSVLRIGLMCSTTSPR 690 (717)
Q Consensus 611 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~cl~~~p~ 690 (717)
..+ ....+... . .. +.+..|+..+.+++.+||+.||+
T Consensus 266 ~~~--~~~~i~~g--------~--~~-------------------------------~~p~~~~~~~~~li~~cl~~dP~ 302 (329)
T 4aoj_A 266 NTE--AIDCITQG--------R--EL-------------------------------ERPRACPPEVYAIMRGCWQREPQ 302 (329)
T ss_dssp HHH--HHHHHHHT--------C--CC-------------------------------CCCTTCCHHHHHHHHHHCCSSTT
T ss_pred HHH--HHHHHHcC--------C--CC-------------------------------CCcccccHHHHHHHHHHcCcChh
Confidence 211 11111100 0 00 11233467789999999999999
Q ss_pred CCCCHHHHHHHHHHHHHH
Q 005045 691 ERIAMNVVVNNLKTIRNC 708 (717)
Q Consensus 691 ~Rps~~eil~~l~~i~~~ 708 (717)
+||||+||++.|+.+.+.
T Consensus 303 ~RPs~~ei~~~L~~l~~~ 320 (329)
T 4aoj_A 303 QRHSIKDVHARLQALAQA 320 (329)
T ss_dssp TSCCHHHHHHHHHHHHHS
T ss_pred HCcCHHHHHHHHHHHhhC
Confidence 999999999999998764
No 3
>4asz_A BDNF/NT-3 growth factors receptor; transferase, TRKA, TRKB; 1.70A {Homo sapiens} PDB: 4at3_A* 4at4_A* 4at5_A* 3v5q_A*
Probab=100.00 E-value=6.9e-51 Score=414.49 Aligned_cols=267 Identities=25% Similarity=0.440 Sum_probs=210.6
Q ss_pred cccccccccccCcccccceEEEEeC------CCchhhhHHhHhhhhhHHHHHHHHHHHHhcCCCCceeEEEEeeccccCC
Q 005045 387 STDNFSKENLIGTGSFGSVYKGTLG------DGTIVAIKVLKLQQQGALKSFIDECNALKSTRHRNILRVITACSSVDLE 460 (717)
Q Consensus 387 ~~~~y~~~~~ig~g~~g~v~~~~~~------~~~~vavK~~~~~~~~~~~~~~~e~~~l~~l~h~ni~~~~~~~~~~~~~ 460 (717)
..++|.+.++||+|+||.||+|++. +++.||||+++.......+.|.+|++++++++||||++++++|.
T Consensus 11 ~r~~~~l~~~lG~G~fG~Vy~a~~~~~~~~~~~~~vAvK~l~~~~~~~~~~f~~E~~il~~l~HpnIV~l~g~~~----- 85 (299)
T 4asz_A 11 KRHNIVLKRELGEGAFGKVFLAECYNLCPEQDKILVAVKTLKDASDNARKDFHREAELLTNLQHEHIVKFYGVCV----- 85 (299)
T ss_dssp CGGGEEEEEEEEC--CCCEEEEEECSCC----CEEEEEEEECSCCHHHHHHHHHHHHHHTTCCCTTBCCEEEEEC-----
T ss_pred CHHHeEEeeEEeeCCCcEEEEEEECCcccCCCCEEEEEEEeCCCChHHHHHHHHHHHHHHhCCCCCCccEEEEEe-----
Confidence 3468999999999999999999853 47789999998666666788999999999999999999999964
Q ss_pred CCceEEEEEecCCCCChhhhccCCCC------CcccccccCHHHHHHHHHHHHHHHHHHHhcCCCCeeecCCCCCCEEeC
Q 005045 461 GNDFKALVFEFMSNGNLDQWLHPSPA------EHYQFKKLSVIQRLNIAIDVASALDYLHHHCDTPIAHCDLKPSNVLLD 534 (717)
Q Consensus 461 ~~~~~~lv~e~~~~~~L~~~l~~~~~------~~~~~~~~~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~dlkp~NIll~ 534 (717)
+++..++||||+++|+|.++++.... .......+++..+..++.||+.||+|||++ +|+||||||+|||++
T Consensus 86 ~~~~~~lV~Ey~~~G~L~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~i~~qia~gl~yLH~~---~iiHRDlKp~NILl~ 162 (299)
T 4asz_A 86 EGDPLIMVFEYMKHGDLNKFLRAHGPDAVLMAEGNPPTELTQSQMLHIAQQIAAGMVYLASQ---HFVHRDLATRNCLVG 162 (299)
T ss_dssp SSSSEEEEEECCTTCBHHHHHHHTSHHHHHC----CCCCCCHHHHHHHHHHHHHHHHHHHHT---TCCCSCCSGGGEEEC
T ss_pred eCCEEEEEEEcCCCCcHHHHHHhcCcccccccccCCCCCCCHHHHHHHHHHHHHHHHHHHhC---CcccCccCHhhEEEC
Confidence 44589999999999999999975321 001225699999999999999999999997 999999999999999
Q ss_pred CCCceEEeeeccchhcccccCCCCCCcceeecccccccccCCCccC-CCCCcccchhhHHHHHHHHHh-CCCCCCCCCCC
Q 005045 535 KDMTAHVGDFGLAKFLFEISDNPSKNQTVSIGLKGSIGYIPPEHMN-GQVSILGDIYSYGILLLEMFT-GKRPTGDMFKD 612 (717)
Q Consensus 535 ~~~~~kl~Dfg~~~~~~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~-~~~~~~sDvwslG~vl~ellt-g~~p~~~~~~~ 612 (717)
.++.+||+|||+|+...... .........||+.|+|||++. +.++.++|||||||++|||+| |+.||.+....
T Consensus 163 ~~~~~Ki~DFGla~~~~~~~-----~~~~~~~~~gt~~ymAPE~~~~~~~~~k~DVwS~Gvvl~Ellt~G~~Pf~~~~~~ 237 (299)
T 4asz_A 163 ENLLVKIGDFGMSRDVYSTD-----YYRVGGHTMLPIRWMPPESIMYRKFTTESDVWSLGVVLWEIFTYGKQPWYQLSNN 237 (299)
T ss_dssp GGGCEEECCCSCHHHHTGGG-----CEEETTTEEECGGGCCHHHHHHCCCCHHHHHHHHHHHHHHHHTTTCCTTTTSCHH
T ss_pred CCCcEEECCcccceecCCCC-----ceeecCceecChhhcCHHHHcCCCCCchhhHHHHHHHHHHHHcCCCCCCCCCCHH
Confidence 99999999999998762221 111223356899999999965 569999999999999999999 99999764321
Q ss_pred chhhhHHHHhcCChhhhhhcCCCCCCCCCCcHHHHHHHHHHHHHHhhhhhhhcchhhhHHHHHHHHHHhhccCCCCcCCC
Q 005045 613 DFSIHMFVSMALPDHVMDILDPSMPLDEENDEEQIEEVIEEKEMMIHIDLEVNTKNKLEECFVSVLRIGLMCSTTSPRER 692 (717)
Q Consensus 613 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~cl~~~p~~R 692 (717)
+ ....+.. .... +.+..|+.++.+++.+||+.+|++|
T Consensus 238 ~--~~~~i~~-----------~~~~------------------------------~~p~~~~~~~~~li~~cl~~dP~~R 274 (299)
T 4asz_A 238 E--VIECITQ-----------GRVL------------------------------QRPRTCPQEVYELMLGCWQREPHMR 274 (299)
T ss_dssp H--HHHHHHH-----------TCCC------------------------------CCCTTCCHHHHHHHHHHTCSSGGGS
T ss_pred H--HHHHHHc-----------CCCC------------------------------CCCccchHHHHHHHHHHcCCChhHC
Confidence 1 1111110 0000 0123346778999999999999999
Q ss_pred CCHHHHHHHHHHHHHHH
Q 005045 693 IAMNVVVNNLKTIRNCF 709 (717)
Q Consensus 693 ps~~eil~~l~~i~~~~ 709 (717)
|||+||++.|+.+.+.-
T Consensus 275 Ps~~~i~~~L~~~~~~~ 291 (299)
T 4asz_A 275 KNIKGIHTLLQNLAKAS 291 (299)
T ss_dssp CCHHHHHHHHHHHHHHS
T ss_pred cCHHHHHHHHHHHHhcC
Confidence 99999999999887653
No 4
>3fpq_A Serine/threonine-protein kinase WNK1; protein serine/threonine kinase, transferase, ATP-BIND kinase, nucleotide-binding, phosphoprotein; 1.80A {Rattus norvegicus}
Probab=100.00 E-value=4e-50 Score=405.57 Aligned_cols=250 Identities=26% Similarity=0.384 Sum_probs=199.7
Q ss_pred ccc-ccccccCcccccceEEEEeC-CCchhhhHHhHhh--hhhHHHHHHHHHHHHhcCCCCceeEEEEeeccccCCCCce
Q 005045 389 DNF-SKENLIGTGSFGSVYKGTLG-DGTIVAIKVLKLQ--QQGALKSFIDECNALKSTRHRNILRVITACSSVDLEGNDF 464 (717)
Q Consensus 389 ~~y-~~~~~ig~g~~g~v~~~~~~-~~~~vavK~~~~~--~~~~~~~~~~e~~~l~~l~h~ni~~~~~~~~~~~~~~~~~ 464 (717)
++| ++.++||+|+||.||+|.++ +++.||+|.+... .....+++.+|++++++++||||+++++++... ......
T Consensus 25 gr~~~~~~~iG~G~fg~Vy~a~~~~~~~~vAiK~i~~~~~~~~~~~~~~~E~~il~~l~HpnIV~~~~~~~~~-~~~~~~ 103 (290)
T 3fpq_A 25 GRFLKFDIEIGRGSFKTVYKGLDTETTVEVAWCELQDRKLTKSERQRFKEEAEMLKGLQHPNIVRFYDSWEST-VKGKKC 103 (290)
T ss_dssp SSEEEEEEEEEECSSEEEEEEEETTTCCEEEEEEEEGGGSCHHHHHHHHHHHHHHHTCCCTTBCCEEEEEEEE-ETTEEE
T ss_pred CceEEeeeEEecCcCcEEEEEEECCCCeEEEEEEEchhhCCHHHHHHHHHHHHHHHhCCCCCCCcEEEEEeec-cCCCcE
Confidence 344 67788999999999999965 7899999998643 234467899999999999999999999987543 123457
Q ss_pred EEEEEecCCCCChhhhccCCCCCcccccccCHHHHHHHHHHHHHHHHHHHhcCCCC--eeecCCCCCCEEeC-CCCceEE
Q 005045 465 KALVFEFMSNGNLDQWLHPSPAEHYQFKKLSVIQRLNIAIDVASALDYLHHHCDTP--IAHCDLKPSNVLLD-KDMTAHV 541 (717)
Q Consensus 465 ~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~i~~~i~~~l~~LH~~~~~~--ivH~dlkp~NIll~-~~~~~kl 541 (717)
.|+|||||+||+|.+++.+. ..+++..+..++.||+.||+|||++ + |+||||||+|||++ .+|.+||
T Consensus 104 ~~lvmEy~~gg~L~~~l~~~-------~~l~~~~~~~~~~qi~~aL~ylH~~---~~~IiHRDlKp~NILl~~~~g~vKl 173 (290)
T 3fpq_A 104 IVLVTELMTSGTLKTYLKRF-------KVMKIKVLRSWCRQILKGLQFLHTR---TPPIIHRDLKCDNIFITGPTGSVKI 173 (290)
T ss_dssp EEEEEECCCSCBHHHHHHHH-------SSCCHHHHHHHHHHHHHHHHHHHTS---SSCCCCCCCCGGGEEESSTTSCEEE
T ss_pred EEEEEeCCCCCCHHHHHHhc-------CCCCHHHHHHHHHHHHHHHHHHHHC---CCCEEecccChhheeEECCCCCEEE
Confidence 89999999999999999754 5789999999999999999999997 6 99999999999998 4799999
Q ss_pred eeeccchhcccccCCCCCCcceeecccccccccCCCccCCCCCcccchhhHHHHHHHHHhCCCCCCCCCCCchhhhHHHH
Q 005045 542 GDFGLAKFLFEISDNPSKNQTVSIGLKGSIGYIPPEHMNGQVSILGDIYSYGILLLEMFTGKRPTGDMFKDDFSIHMFVS 621 (717)
Q Consensus 542 ~Dfg~~~~~~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~sDvwslG~vl~elltg~~p~~~~~~~~~~~~~~~~ 621 (717)
+|||+|+.. .........||+.|+|||++.++++.++|||||||++|||+||+.||.+...... +...+.
T Consensus 174 ~DFGla~~~---------~~~~~~~~~GTp~YmAPE~~~~~y~~~~DiwSlGvilyelltg~~Pf~~~~~~~~-~~~~i~ 243 (290)
T 3fpq_A 174 GDLGLATLK---------RASFAKAVIGTPEFMAPEMYEEKYDESVDVYAFGMCMLEMATSEYPYSECQNAAQ-IYRRVT 243 (290)
T ss_dssp CCTTGGGGC---------CTTSBEESCSSCCCCCGGGGGTCCCTHHHHHHHHHHHHHHHHSSCTTTTCSSHHH-HHHHHT
T ss_pred EeCcCCEeC---------CCCccCCcccCccccCHHHcCCCCCcHHHHHHHHHHHHHHHHCCCCCCCCCcHHH-HHHHHH
Confidence 999999753 1122345679999999999999999999999999999999999999975422211 111111
Q ss_pred hcC-ChhhhhhcCCCCCCCCCCcHHHHHHHHHHHHHHhhhhhhhcchhhhHHHHHHHHHHhhccCCCCcCCCCCHHHHHH
Q 005045 622 MAL-PDHVMDILDPSMPLDEENDEEQIEEVIEEKEMMIHIDLEVNTKNKLEECFVSVLRIGLMCSTTSPRERIAMNVVVN 700 (717)
Q Consensus 622 ~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~cl~~~p~~Rps~~eil~ 700 (717)
... |.. .+..++.++.+|+.+||+.||++|||++|+++
T Consensus 244 ~~~~~~~-----------------------------------------~~~~~~~~~~~li~~~L~~dP~~R~s~~e~l~ 282 (290)
T 3fpq_A 244 SGVKPAS-----------------------------------------FDKVAIPEVKEIIEGCIRQNKDERYSIKDLLN 282 (290)
T ss_dssp TTCCCGG-----------------------------------------GGGCCCHHHHHHHHHHSCSSGGGSCCHHHHHT
T ss_pred cCCCCCC-----------------------------------------CCccCCHHHHHHHHHHccCChhHCcCHHHHhc
Confidence 100 000 01112445788999999999999999999986
No 5
>4b9d_A Serine/threonine-protein kinase NEK1; transferase, inhibitor; HET: CK7; 1.90A {Homo sapiens} PDB: 4apc_A*
Probab=100.00 E-value=1.2e-50 Score=417.93 Aligned_cols=250 Identities=23% Similarity=0.325 Sum_probs=197.0
Q ss_pred ccccccccccCcccccceEEEEeC-CCchhhhHHhHhh--hhhHHHHHHHHHHHHhcCCCCceeEEEEeeccccCCCCce
Q 005045 388 TDNFSKENLIGTGSFGSVYKGTLG-DGTIVAIKVLKLQ--QQGALKSFIDECNALKSTRHRNILRVITACSSVDLEGNDF 464 (717)
Q Consensus 388 ~~~y~~~~~ig~g~~g~v~~~~~~-~~~~vavK~~~~~--~~~~~~~~~~e~~~l~~l~h~ni~~~~~~~~~~~~~~~~~ 464 (717)
-++|++++.||+|+||.||+|+++ +|+.||||++... .....+.+.+|++++++++||||+++++++ .+++.
T Consensus 23 me~Y~~~~~lG~G~fg~V~~a~~~~~~~~vAiK~i~~~~~~~~~~~~~~~E~~il~~l~HpnIV~~~~~~-----~~~~~ 97 (350)
T 4b9d_A 23 MEKYVRLQKIGEGSFGKAILVKSTEDGRQYVIKEINISRMSSKEREESRREVAVLANMKHPNIVQYRESF-----EENGS 97 (350)
T ss_dssp CCCEEEEEEC------CEEEEEETTTCCEEEEEEEECTTSCHHHHHHHHHHHHHHHHCCCTTBCCEEEEE-----EETTE
T ss_pred ccceEEeEEEecCCCeEEEEEEECCCCCEEEEEEEehHHCCHHHHHHHHHHHHHHHHCCCCCCCcEEEEE-----EECCE
Confidence 368999999999999999999965 7999999998644 234567899999999999999999999995 44568
Q ss_pred EEEEEecCCCCChhhhccCCCCCcccccccCHHHHHHHHHHHHHHHHHHHhcCCCCeeecCCCCCCEEeCCCCceEEeee
Q 005045 465 KALVFEFMSNGNLDQWLHPSPAEHYQFKKLSVIQRLNIAIDVASALDYLHHHCDTPIAHCDLKPSNVLLDKDMTAHVGDF 544 (717)
Q Consensus 465 ~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~dlkp~NIll~~~~~~kl~Df 544 (717)
.|+|||||+||+|.+++..... ..+++..++.++.||+.||+|||++ +|+||||||+|||++.+|.+||+||
T Consensus 98 ~yiVmEy~~gg~L~~~i~~~~~-----~~~~e~~~~~~~~qi~~aL~ylH~~---~IiHRDlKp~NILl~~~g~vKl~DF 169 (350)
T 4b9d_A 98 LYIVMDYCEGGDLFKRINAQKG-----VLFQEDQILDWFVQICLALKHVHDR---KILHRDIKSQNIFLTKDGTVQLGDF 169 (350)
T ss_dssp EEEEEECCTTCBHHHHHHHTTT-----CCCCHHHHHHHHHHHHHHHHHHHHT---TCEETTCCGGGEEECTTCCEEECST
T ss_pred EEEEEeCCCCCcHHHHHHHcCC-----CCCCHHHHHHHHHHHHHHHHHHHHC---CeeeccCCHHHEEECCCCCEEEccc
Confidence 9999999999999999964421 4579999999999999999999998 9999999999999999999999999
Q ss_pred ccchhcccccCCCCCCcceeecccccccccCCCccCCC-CCcccchhhHHHHHHHHHhCCCCCCCCCCCchhhhHHHHhc
Q 005045 545 GLAKFLFEISDNPSKNQTVSIGLKGSIGYIPPEHMNGQ-VSILGDIYSYGILLLEMFTGKRPTGDMFKDDFSIHMFVSMA 623 (717)
Q Consensus 545 g~~~~~~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~-~~~~sDvwslG~vl~elltg~~p~~~~~~~~~~~~~~~~~~ 623 (717)
|+|+.... .........||+.|+|||++.++ |+.++|||||||++|||++|+.||......+ .+..
T Consensus 170 Gla~~~~~-------~~~~~~~~~GT~~YmAPE~l~~~~y~~~~DiwSlGvilyemltG~~PF~~~~~~~-~~~~----- 236 (350)
T 4b9d_A 170 GIARVLNS-------TVELARACIGTPYYLSPEICENKPYNNKSDIWALGCVLYELCTLKHAFEAGSMKN-LVLK----- 236 (350)
T ss_dssp TEESCCCH-------HHHHHHHHHSCCTTCCHHHHTTCCCCHHHHHHHHHHHHHHHHHSSCSCCCSSHHH-HHHH-----
T ss_pred ccceeecC-------CcccccccCCCccccCHHHHCCCCCCcHHHHHHHHHHHHHHHHCCCCCCCcCHHH-HHHH-----
Confidence 99986521 11123446799999999998765 8999999999999999999999997542211 1111
Q ss_pred CChhhhhhcCCCCCCCCCCcHHHHHHHHHHHHHHhhhhhhhcchhhhHHHHHHHHHHhhccCCCCcCCCCCHHHHHH
Q 005045 624 LPDHVMDILDPSMPLDEENDEEQIEEVIEEKEMMIHIDLEVNTKNKLEECFVSVLRIGLMCSTTSPRERIAMNVVVN 700 (717)
Q Consensus 624 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~cl~~~p~~Rps~~eil~ 700 (717)
+.....+.. +..++..+.+|+.+||+.||++|||++|+++
T Consensus 237 -------i~~~~~~~~------------------------------~~~~s~~~~~li~~~L~~dP~~R~s~~e~l~ 276 (350)
T 4b9d_A 237 -------IISGSFPPV------------------------------SLHYSYDLRSLVSQLFKRNPRDRPSVNSILE 276 (350)
T ss_dssp -------HHHTCCCCC------------------------------CTTSCHHHHHHHHHHTCSSGGGSCCHHHHHT
T ss_pred -------HHcCCCCCC------------------------------CccCCHHHHHHHHHHccCChhHCcCHHHHhc
Confidence 111111100 1112556789999999999999999999986
No 6
>4fih_A Serine/threonine-protein kinase PAK 4; kinase domain, protein ATP binding, phosphorylation, transferase; HET: SEP; 1.97A {Homo sapiens} PDB: 4fig_A* 4fif_A* 4fii_A* 4fij_A*
Probab=100.00 E-value=6.1e-50 Score=412.05 Aligned_cols=250 Identities=22% Similarity=0.328 Sum_probs=204.4
Q ss_pred cccccccccccCcccccceEEEEeC-CCchhhhHHhHhhhhhHHHHHHHHHHHHhcCCCCceeEEEEeeccccCCCCceE
Q 005045 387 STDNFSKENLIGTGSFGSVYKGTLG-DGTIVAIKVLKLQQQGALKSFIDECNALKSTRHRNILRVITACSSVDLEGNDFK 465 (717)
Q Consensus 387 ~~~~y~~~~~ig~g~~g~v~~~~~~-~~~~vavK~~~~~~~~~~~~~~~e~~~l~~l~h~ni~~~~~~~~~~~~~~~~~~ 465 (717)
....|++.++||+|+||.||+|+++ +|+.||||++........+.+.+|++++++++||||+++++++. +.+..
T Consensus 72 p~~~y~~~~~iG~G~fG~V~~a~~~~tg~~vAiK~i~~~~~~~~~~~~~Ei~il~~l~HpnIV~l~~~~~-----~~~~~ 146 (346)
T 4fih_A 72 PRSYLDNFIKIGEGSTGIVCIATVRSSGKLVAVKKMDLRKQQRRELLFNEVVIMRDYQHENVVEMYNSYL-----VGDEL 146 (346)
T ss_dssp GGGTEEEEEEEEECSSCEEEEEEETTTCCEEEEEEEEGGGCSSGGGGHHHHHHHHHCCCTTBCCEEEEEE-----ETTEE
T ss_pred hhHhcEEeEEeecCcCeEEEEEEECCCCCEEEEEEEecCchhHHHHHHHHHHHHHhCCCCCCCcEEEEEE-----ECCEE
Confidence 3467999999999999999999975 89999999997665555677889999999999999999999954 45689
Q ss_pred EEEEecCCCCChhhhccCCCCCcccccccCHHHHHHHHHHHHHHHHHHHhcCCCCeeecCCCCCCEEeCCCCceEEeeec
Q 005045 466 ALVFEFMSNGNLDQWLHPSPAEHYQFKKLSVIQRLNIAIDVASALDYLHHHCDTPIAHCDLKPSNVLLDKDMTAHVGDFG 545 (717)
Q Consensus 466 ~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~dlkp~NIll~~~~~~kl~Dfg 545 (717)
|+|||||+||+|.+++.. ..+++..+..++.||+.||+|||++ +|+||||||+|||++.+|.+||+|||
T Consensus 147 ~ivmEy~~gg~L~~~l~~--------~~l~e~~~~~~~~qi~~aL~ylH~~---~IiHRDlKp~NILl~~~g~vKl~DFG 215 (346)
T 4fih_A 147 WVVMEFLEGGALTDIVTH--------TRMNEEQIAAVCLAVLQALSVLHAQ---GVIHRDIKSDSILLTHDGRVKLSDFG 215 (346)
T ss_dssp EEEECCCTTEEHHHHHHH--------SCCCHHHHHHHHHHHHHHHHHHHHT---TEECCCCSGGGEEECTTCCEEECCCT
T ss_pred EEEEeCCCCCcHHHHHHc--------CCCCHHHHHHHHHHHHHHHHHHHHC---CcccccCCHHHEEECCCCCEEEecCc
Confidence 999999999999999864 4589999999999999999999998 99999999999999999999999999
Q ss_pred cchhcccccCCCCCCcceeecccccccccCCCccCC-CCCcccchhhHHHHHHHHHhCCCCCCCCCCCchhhhHHHHhcC
Q 005045 546 LAKFLFEISDNPSKNQTVSIGLKGSIGYIPPEHMNG-QVSILGDIYSYGILLLEMFTGKRPTGDMFKDDFSIHMFVSMAL 624 (717)
Q Consensus 546 ~~~~~~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~-~~~~~sDvwslG~vl~elltg~~p~~~~~~~~~~~~~~~~~~~ 624 (717)
+|+.+.. .........||+.|+|||++.+ .|+.++|||||||++|||++|..||.+... ......+...
T Consensus 216 la~~~~~-------~~~~~~~~~GTp~YmAPEvl~~~~y~~~~DiWSlGvilyeml~G~~PF~~~~~--~~~~~~i~~~- 285 (346)
T 4fih_A 216 FCAQVSK-------EVPRRKSLVGTPYWMAPELISRLPYGPEVDIWSLGIMVIEMVDGEPPYFNEPP--LKAMKMIRDN- 285 (346)
T ss_dssp TCEECCS-------SSCCBCCCCSCGGGCCHHHHTTCCBCTHHHHHHHHHHHHHHHHSSCTTTTSCH--HHHHHHHHHS-
T ss_pred CceecCC-------CCCcccccccCcCcCCHHHHCCCCCCcHHHHHHHHHHHHHHHHCCCCCCCcCH--HHHHHHHHcC-
Confidence 9987521 1222345679999999999765 489999999999999999999999965321 1111111111
Q ss_pred ChhhhhhcCCCCCCCCCCcHHHHHHHHHHHHHHhhhhhhhcchhhhHHHHHHHHHHhhccCCCCcCCCCCHHHHHH
Q 005045 625 PDHVMDILDPSMPLDEENDEEQIEEVIEEKEMMIHIDLEVNTKNKLEECFVSVLRIGLMCSTTSPRERIAMNVVVN 700 (717)
Q Consensus 625 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~cl~~~p~~Rps~~eil~ 700 (717)
..+... ....++..+.+|+.+||+.||++|||++|+++
T Consensus 286 -------~~~~~~-------------------------------~~~~~s~~~~dli~~~L~~dP~~R~ta~e~l~ 323 (346)
T 4fih_A 286 -------LPPRLK-------------------------------NLHKVSPSLKGFLDRLLVRDPAQRATAAELLK 323 (346)
T ss_dssp -------SCCCCS-------------------------------CGGGSCHHHHHHHHHHSCSSTTTSCCHHHHTT
T ss_pred -------CCCCCC-------------------------------ccccCCHHHHHHHHHHcCCChhHCcCHHHHhc
Confidence 111111 11223556789999999999999999999986
No 7
>4gt4_A Tyrosine-protein kinase transmembrane receptor RO; ATP binding, phosphorylation, transferase; 2.41A {Homo sapiens} PDB: 3zzw_A
Probab=100.00 E-value=4.9e-50 Score=410.01 Aligned_cols=270 Identities=23% Similarity=0.369 Sum_probs=209.0
Q ss_pred CCCcccccccccccccccccCcccccceEEEEeC------CCchhhhHHhHhhh-hhHHHHHHHHHHHHhcCCCCceeEE
Q 005045 378 GMSYSDISKSTDNFSKENLIGTGSFGSVYKGTLG------DGTIVAIKVLKLQQ-QGALKSFIDECNALKSTRHRNILRV 450 (717)
Q Consensus 378 ~~s~~~~~~~~~~y~~~~~ig~g~~g~v~~~~~~------~~~~vavK~~~~~~-~~~~~~~~~e~~~l~~l~h~ni~~~ 450 (717)
...+.++. ..++++.++||+|+||.||+|.+. +++.||||.++... ....+.|.+|+.++++++||||+++
T Consensus 17 ~~~~~ei~--~~~~~~~~~lG~G~fG~Vykg~~~~~~~~~~~~~VAvK~l~~~~~~~~~~~f~~E~~il~~l~HpNIV~l 94 (308)
T 4gt4_A 17 QAKLKEIS--LSAVRFMEELGEDRFGKVYKGHLFGPAPGEQTQAVAIKTLKDKAEGPLREEFRHEAMLRARLQHPNVVCL 94 (308)
T ss_dssp --CCCBCC--GGGEEEEEEEEECSSCEEEEEEEC-------CEEEEEEECCC-CCC-CHHHHHHHHHHHHHCCCTTBCCE
T ss_pred cCCcccCC--HHHCeEeeEeccCCCcEEEEEEEcCCccCCCCeEEEEEEECcccChHHHHHHHHHHHHHHhCCCCCCCCc
Confidence 34455544 456778899999999999999852 56789999986442 3345789999999999999999999
Q ss_pred EEeeccccCCCCceEEEEEecCCCCChhhhccCCCCCc---------ccccccCHHHHHHHHHHHHHHHHHHHhcCCCCe
Q 005045 451 ITACSSVDLEGNDFKALVFEFMSNGNLDQWLHPSPAEH---------YQFKKLSVIQRLNIAIDVASALDYLHHHCDTPI 521 (717)
Q Consensus 451 ~~~~~~~~~~~~~~~~lv~e~~~~~~L~~~l~~~~~~~---------~~~~~~~~~~~~~i~~~i~~~l~~LH~~~~~~i 521 (717)
+++|. +++..++||||+++|+|.+++....... .....+++..+..++.|||.||+|||+. +|
T Consensus 95 ~g~~~-----~~~~~~lV~Ey~~~G~L~~~L~~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~~qia~gl~yLH~~---~i 166 (308)
T 4gt4_A 95 LGVVT-----KDQPLSMIFSYCSHGDLHEFLVMRSPHSDVGSTDDDRTVKSALEPPDFVHLVAQIAAGMEYLSSH---HV 166 (308)
T ss_dssp EEEEC-----SSSSCEEEEECCSSCBHHHHHHTTCSSCCCC-----CCEECCCCHHHHHHHHHHHHHHHHHHHHT---TC
T ss_pred ceEEE-----ECCEEEEEEEcCCCCcHHHHHHhhCccccccccccccccccCCCHHHHHHHHHHHHHHHHHHHhC---CC
Confidence 99964 3457899999999999999996542110 1125689999999999999999999998 99
Q ss_pred eecCCCCCCEEeCCCCceEEeeeccchhcccccCCCCCCcceeecccccccccCCCcc-CCCCCcccchhhHHHHHHHHH
Q 005045 522 AHCDLKPSNVLLDKDMTAHVGDFGLAKFLFEISDNPSKNQTVSIGLKGSIGYIPPEHM-NGQVSILGDIYSYGILLLEMF 600 (717)
Q Consensus 522 vH~dlkp~NIll~~~~~~kl~Dfg~~~~~~~~~~~~~~~~~~~~~~~~~~~y~aPE~~-~~~~~~~sDvwslG~vl~ell 600 (717)
|||||||+|||++.++.+||+|||+|+....... ........||+.|+|||++ .+.++.++|||||||++|||+
T Consensus 167 iHRDLK~~NILl~~~~~~Ki~DFGlar~~~~~~~-----~~~~~~~~gt~~ymAPE~l~~~~~s~ksDVwSfGvvl~El~ 241 (308)
T 4gt4_A 167 VHKDLATRNVLVYDKLNVKISDLGLFREVYAADY-----YKLLGNSLLPIRWMAPEAIMYGKFSIDSDIWSYGVVLWEVF 241 (308)
T ss_dssp CCSCCSGGGEEECGGGCEEECCSCCBCGGGGGGC-----BCSSSSSCBCGGGCCHHHHHHCCCCHHHHHHHHHHHHHHHH
T ss_pred CCCCccccceEECCCCCEEECCcccceeccCCCc-----eeEecccccCCcccCHHHHhCCCCCccchhhhHHHHHHHHH
Confidence 9999999999999999999999999987633221 1122345689999999995 456999999999999999999
Q ss_pred h-CCCCCCCCCCCchhhhHHHHhcCChhhhhhcCCCCCCCCCCcHHHHHHHHHHHHHHhhhhhhhcchhhhHHHHHHHHH
Q 005045 601 T-GKRPTGDMFKDDFSIHMFVSMALPDHVMDILDPSMPLDEENDEEQIEEVIEEKEMMIHIDLEVNTKNKLEECFVSVLR 679 (717)
Q Consensus 601 t-g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 679 (717)
| |..||.+.... .....+. +.... +.+++|+..+.+
T Consensus 242 t~g~~Pf~~~~~~--~~~~~i~-----------~~~~~------------------------------~~p~~~~~~~~~ 278 (308)
T 4gt4_A 242 SYGLQPYCGYSNQ--DVVEMIR-----------NRQVL------------------------------PCPDDCPAWVYA 278 (308)
T ss_dssp TTTCCTTTTCCHH--HHHHHHH-----------TTCCC------------------------------CCCTTCCHHHHH
T ss_pred hCCCCCCCCCCHH--HHHHHHH-----------cCCCC------------------------------CCcccchHHHHH
Confidence 9 89999765321 1111111 11000 122345777899
Q ss_pred HhhccCCCCcCCCCCHHHHHHHHHHH
Q 005045 680 IGLMCSTTSPRERIAMNVVVNNLKTI 705 (717)
Q Consensus 680 li~~cl~~~p~~Rps~~eil~~l~~i 705 (717)
++.+||+.+|++||||+||++.|+.+
T Consensus 279 li~~C~~~dP~~RPs~~ei~~~L~a~ 304 (308)
T 4gt4_A 279 LMIECWNEFPSRRPRFKDIHSRLRAW 304 (308)
T ss_dssp HHHHHTCSSGGGSCCHHHHHHHHHTS
T ss_pred HHHHHcCCChhHCcCHHHHHHHHHhc
Confidence 99999999999999999999998754
No 8
>4g3f_A NF-kappa-beta-inducing kinase; non-RD kinase, protein serine/threonine kinase, S based drug design, MAP3K14, transferase; HET: 0WB; 1.64A {Mus musculus} PDB: 4g3g_A* 4g3c_A 4dn5_A*
Probab=100.00 E-value=1.3e-49 Score=408.44 Aligned_cols=260 Identities=22% Similarity=0.265 Sum_probs=205.2
Q ss_pred cccccccccccCcccccceEEEEeC-CCchhhhHHhHhhhhhHHHHHHHHHHHHhcCCCCceeEEEEeeccccCCCCceE
Q 005045 387 STDNFSKENLIGTGSFGSVYKGTLG-DGTIVAIKVLKLQQQGALKSFIDECNALKSTRHRNILRVITACSSVDLEGNDFK 465 (717)
Q Consensus 387 ~~~~y~~~~~ig~g~~g~v~~~~~~-~~~~vavK~~~~~~~~~~~~~~~e~~~l~~l~h~ni~~~~~~~~~~~~~~~~~~ 465 (717)
..+.|++.++||+|+||.||+|+++ +|+.||||+++.... ..+|++++++++||||+++++++. +++..
T Consensus 56 ~~~~~~~~~~lG~G~fG~Vy~a~~~~~g~~vAiK~i~~~~~-----~~~E~~il~~l~HpnIV~l~~~~~-----~~~~~ 125 (336)
T 4g3f_A 56 EVHWMTHQPRVGRGSFGEVHRMKDKQTGFQCAVKKVRLEVF-----RVEELVACAGLSSPRIVPLYGAVR-----EGPWV 125 (336)
T ss_dssp TTTEEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEETTTC-----CTHHHHTTTTCCCTTBCCEEEEEE-----ETTEE
T ss_pred chhheEeCcEeccCCCeEEEEEEECCCCCEEEEEEECHHHh-----HHHHHHHHHhCCCCCCCcEEEEEE-----ECCEE
Confidence 4567899999999999999999965 799999999875422 246999999999999999999954 45689
Q ss_pred EEEEecCCCCChhhhccCCCCCcccccccCHHHHHHHHHHHHHHHHHHHhcCCCCeeecCCCCCCEEeCCCC-ceEEeee
Q 005045 466 ALVFEFMSNGNLDQWLHPSPAEHYQFKKLSVIQRLNIAIDVASALDYLHHHCDTPIAHCDLKPSNVLLDKDM-TAHVGDF 544 (717)
Q Consensus 466 ~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~dlkp~NIll~~~~-~~kl~Df 544 (717)
|+||||++||+|.++++.. +.+++..+..++.||+.||+|||++ +|+||||||+|||++.+| .+||+||
T Consensus 126 ~ivmEy~~gg~L~~~l~~~-------~~l~e~~~~~~~~qi~~aL~ylH~~---~IiHRDlKp~NILl~~~g~~vKl~DF 195 (336)
T 4g3f_A 126 NIFMELLEGGSLGQLIKQM-------GCLPEDRALYYLGQALEGLEYLHTR---RILHGDVKADNVLLSSDGSRAALCDF 195 (336)
T ss_dssp EEEECCCTTCBHHHHHHHH-------SSCCHHHHHHHHHHHHHHHHHHHTT---TEECSCCCGGGEEECTTSCCEEECCC
T ss_pred EEEEeccCCCcHHHHHHHc-------CCCCHHHHHHHHHHHHHHHHHHHHC---CceecccCHHHEEEeCCCCEEEEeeC
Confidence 9999999999999999754 5799999999999999999999998 999999999999999988 6999999
Q ss_pred ccchhcccccCCCCCCcceeecccccccccCCCccCCC-CCcccchhhHHHHHHHHHhCCCCCCCCCCCchhhhHHHHhc
Q 005045 545 GLAKFLFEISDNPSKNQTVSIGLKGSIGYIPPEHMNGQ-VSILGDIYSYGILLLEMFTGKRPTGDMFKDDFSIHMFVSMA 623 (717)
Q Consensus 545 g~~~~~~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~-~~~~sDvwslG~vl~elltg~~p~~~~~~~~~~~~~~~~~~ 623 (717)
|+|+....... ...........||+.|||||++.++ ++.++|||||||++|||++|..||.+........ ......
T Consensus 196 Gla~~~~~~~~--~~~~~~~~~~~GT~~YmAPE~~~~~~y~~~~DiwSlGvilyemltG~~Pf~~~~~~~~~~-~i~~~~ 272 (336)
T 4g3f_A 196 GHALCLQPDGL--GKSLLTGDYIPGTETHMAPEVVMGKPCDAKVDIWSSCCMMLHMLNGCHPWTQYFRGPLCL-KIASEP 272 (336)
T ss_dssp TTCEEC--------------CCCCCCGGGCCHHHHTTCCCCTHHHHHHHHHHHHHHHHSSCSSTTTCCSCCHH-HHHHSC
T ss_pred CCCeEccCCCc--ccceecCCccccCccccCHHHHCCCCCCcHHHHHHHHHHHHHHHHCcCCCCCCCHHHHHH-HHHcCC
Confidence 99987522111 0111122335799999999997765 8999999999999999999999997654332211 111100
Q ss_pred CChhhhhhcCCCCCCCCCCcHHHHHHHHHHHHHHhhhhhhhcchhhhHHHHHHHHHHhhccCCCCcCCCCCHHHHHHHHH
Q 005045 624 LPDHVMDILDPSMPLDEENDEEQIEEVIEEKEMMIHIDLEVNTKNKLEECFVSVLRIGLMCSTTSPRERIAMNVVVNNLK 703 (717)
Q Consensus 624 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~cl~~~p~~Rps~~eil~~l~ 703 (717)
.+ . .+.+++++..+.+++.+||+.||++|||++|+++.+.
T Consensus 273 ~~--~--------------------------------------~~~~~~~s~~~~~li~~~L~~dP~~R~sa~el~~~l~ 312 (336)
T 4g3f_A 273 PP--I--------------------------------------REIPPSCAPLTAQAIQEGLRKEPVHRASAMELRRKVG 312 (336)
T ss_dssp CG--G--------------------------------------GGSCTTSCHHHHHHHHHHTCSSGGGSCCHHHHHHHHH
T ss_pred CC--c--------------------------------------hhcCccCCHHHHHHHHHHccCCHhHCcCHHHHHHHHH
Confidence 00 0 0012233667889999999999999999999999998
Q ss_pred HHHHHH
Q 005045 704 TIRNCF 709 (717)
Q Consensus 704 ~i~~~~ 709 (717)
...++.
T Consensus 313 ~~l~~~ 318 (336)
T 4g3f_A 313 KALQEV 318 (336)
T ss_dssp HHHHHT
T ss_pred HHHhhh
Confidence 887654
No 9
>4aw0_A HPDK1, 3-phosphoinositide-dependent protein kinase 1; transferase, allosteric regulation, allosteric site, phosphorylation, AGC protein kinase; HET: SEP ATP MJF; 1.43A {Homo sapiens} PDB: 3hrc_A* 3hrf_A* 4a06_A* 4a07_A* 3rcj_A* 4aw1_A* 3rwq_A* 3sc1_A* 3qd0_A* 2r7b_A* 3ion_A* 3qcq_A* 3qcs_A* 3qcx_A* 3qcy_A* 3iop_A* 3qd3_A* 3qd4_A* 3h9o_A* 1uu3_A* ...
Probab=100.00 E-value=1.1e-49 Score=403.95 Aligned_cols=249 Identities=21% Similarity=0.332 Sum_probs=202.2
Q ss_pred ccccccccccCcccccceEEEEeC-CCchhhhHHhHhh---hhhHHHHHHHHHHHHhcCCCCceeEEEEeeccccCCCCc
Q 005045 388 TDNFSKENLIGTGSFGSVYKGTLG-DGTIVAIKVLKLQ---QQGALKSFIDECNALKSTRHRNILRVITACSSVDLEGND 463 (717)
Q Consensus 388 ~~~y~~~~~ig~g~~g~v~~~~~~-~~~~vavK~~~~~---~~~~~~~~~~e~~~l~~l~h~ni~~~~~~~~~~~~~~~~ 463 (717)
.++|++.+.||+|+||.||+|+++ +|+.||+|++... .....+.+.+|++++++++||||+++++++ ++++
T Consensus 31 ~~dy~i~~~lG~G~fg~V~~a~~~~~~~~~AiK~i~k~~~~~~~~~~~~~~E~~il~~l~HpnIv~l~~~~-----~~~~ 105 (311)
T 4aw0_A 31 PEDFKFGKILGEGSFSTVVLARELATSREYAIKILEKRHIIKENKVPYVTRERDVMSRLDHPFFVKLYFTF-----QDDE 105 (311)
T ss_dssp GGGEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEEHHHHHHTTCHHHHHHHHHHHTTCCCTTBCCEEEEE-----ECSS
T ss_pred ccccEEEEEEecccCeEEEEEEECCCCCEEEEEEEEHHHCCCHHHHHHHHHHHHHHHhCCCCCCCeEEEEE-----EeCC
Confidence 467999999999999999999965 8999999998643 234467899999999999999999999994 5566
Q ss_pred eEEEEEecCCCCChhhhccCCCCCcccccccCHHHHHHHHHHHHHHHHHHHhcCCCCeeecCCCCCCEEeCCCCceEEee
Q 005045 464 FKALVFEFMSNGNLDQWLHPSPAEHYQFKKLSVIQRLNIAIDVASALDYLHHHCDTPIAHCDLKPSNVLLDKDMTAHVGD 543 (717)
Q Consensus 464 ~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~dlkp~NIll~~~~~~kl~D 543 (717)
..|+||||++||+|.+++... +.+++..++.++.||+.||+|||++ +|+||||||+|||++.+|.+||+|
T Consensus 106 ~~yivmEy~~gG~L~~~i~~~-------~~l~e~~~~~~~~qi~~al~ylH~~---~IiHRDlKPeNILl~~~g~vKl~D 175 (311)
T 4aw0_A 106 KLYFGLSYAKNGELLKYIRKI-------GSFDETCTRFYTAEIVSALEYLHGK---GIIHRDLKPENILLNEDMHIQITD 175 (311)
T ss_dssp EEEEEECCCTTEEHHHHHHHH-------SSCCHHHHHHHHHHHHHHHHHHHHT---TEECSCCSGGGEEECTTSCEEECC
T ss_pred EEEEEEecCCCCCHHHHHHHc-------CCCCHHHHHHHHHHHHHHHHHHHHC---CCccCCCCHHHeEEcCCCCEEEEE
Confidence 999999999999999999754 5799999999999999999999998 999999999999999999999999
Q ss_pred eccchhcccccCCCCCCcceeecccccccccCCCccCCC-CCcccchhhHHHHHHHHHhCCCCCCCCCCCchhhhHHHHh
Q 005045 544 FGLAKFLFEISDNPSKNQTVSIGLKGSIGYIPPEHMNGQ-VSILGDIYSYGILLLEMFTGKRPTGDMFKDDFSIHMFVSM 622 (717)
Q Consensus 544 fg~~~~~~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~-~~~~sDvwslG~vl~elltg~~p~~~~~~~~~~~~~~~~~ 622 (717)
||+|+.+... ..........||+.|+|||++.++ ++.++||||+||++|+|++|..||...... .....
T Consensus 176 FGla~~~~~~-----~~~~~~~~~~GTp~YmAPEvl~~~~y~~~~DiWSlGvilyeml~G~~PF~~~~~~--~~~~~--- 245 (311)
T 4aw0_A 176 FGTAKVLSPE-----SKQARANSFVGTAQYVSPELLTEKSACKSSDLWALGCIIYQLVAGLPPFRAGNEG--LIFAK--- 245 (311)
T ss_dssp CTTCEECCTT-----TTCCCBCCCCSCGGGCCHHHHHHSCBCHHHHHHHHHHHHHHHHHSSCSSCCSSHH--HHHHH---
T ss_pred cCCceecCCC-----CCcccccCcccCcccCCHHHHcCCCCCcHHHHHHHHHHHHHHHhCCCCCCCCCHH--HHHHH---
Confidence 9999876211 112233456799999999997664 899999999999999999999999653211 11111
Q ss_pred cCChhhhhhcCCCCCCCCCCcHHHHHHHHHHHHHHhhhhhhhcchhhhHHHHHHHHHHhhccCCCCcCCCCCHHHHHH
Q 005045 623 ALPDHVMDILDPSMPLDEENDEEQIEEVIEEKEMMIHIDLEVNTKNKLEECFVSVLRIGLMCSTTSPRERIAMNVVVN 700 (717)
Q Consensus 623 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~cl~~~p~~Rps~~eil~ 700 (717)
+....... +...+.++.+|+.+||+.||++|||++|++.
T Consensus 246 --------i~~~~~~~-------------------------------p~~~s~~~~dli~~lL~~dp~~R~t~~e~~~ 284 (311)
T 4aw0_A 246 --------IIKLEYDF-------------------------------PEKFFPKARDLVEKLLVLDATKRLGCEEMEG 284 (311)
T ss_dssp --------HHHTCCCC-------------------------------CTTCCHHHHHHHHHHSCSSGGGSTTSGGGTC
T ss_pred --------HHcCCCCC-------------------------------CcccCHHHHHHHHHHccCCHhHCcChHHHcC
Confidence 11101100 0111445788999999999999999998753
No 10
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=100.00 E-value=5.8e-48 Score=449.17 Aligned_cols=356 Identities=31% Similarity=0.495 Sum_probs=258.8
Q ss_pred eecEEEcCCCcCcCCCCcCCcCC-CCCCEEECCCCcccccCCcCCCCCCCCCEEEccCccccccCCcc-ccCCCCCCEEe
Q 005045 11 MTQDLNLTYNYLSGKIPTNLSHC-TELRSFEASVNDFVGQIPNQLSSLTKLEIIGLGGSNLTGNVPAW-IGNFSSLKALS 88 (717)
Q Consensus 11 ~~~~L~L~~n~l~~~~~~~~~~l-~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~-~~~l~~L~~L~ 88 (717)
.+++|+|++|++++.+|..++.+ ++|++|+|++|.+++.+|..|+++++|++|+|++|.+++.+|.. +..+++|++|+
T Consensus 270 ~L~~L~L~~n~l~~~ip~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~ip~~~l~~l~~L~~L~ 349 (768)
T 3rgz_A 270 SLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLD 349 (768)
T ss_dssp TCCEEECCSSEEEESCCCCSCTTCTTCSEEECCSSEEEECCCGGGGGCTTCCEEECCSSEEEEECCHHHHTTCTTCCEEE
T ss_pred CCCEEECcCCccCCccCHHHHhhcCcCCEEECcCCcCCCccchHHhcCCCccEEECCCCcccCcCCHHHHhcCCCCCEEe
Confidence 45555555555555555555443 55555555555555555555555555555555555555444433 55555555555
Q ss_pred ccCCcCcccCChhhhc---------------------------cCCCCeEeccCCCCCCCCCccccCCCCccEEEcccCc
Q 005045 89 LAWNNLRGSIPNELGQ---------------------------LSGLGFFTLYGNFISGIIPSSIYNISSIYYFSVTQNQ 141 (717)
Q Consensus 89 L~~n~l~~~~~~~~~~---------------------------l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~ 141 (717)
|++|++++.+|..+.. +++|++|+|++|.+++..|..|.++++|++|+|++|+
T Consensus 350 Ls~n~l~~~~p~~l~~l~~~L~~L~Ls~N~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~ 429 (768)
T 3rgz_A 350 LSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNY 429 (768)
T ss_dssp CCSSEEEECCCTTHHHHTTTCSEEECCSSEEEEECCTTTTCSTTCCCCEEECCSSEEEEECCGGGGGCTTCCEEECCSSE
T ss_pred CcCCccCccccHHHHhhhcCCcEEEccCCCcCCCcChhhhhcccCCccEEECCCCccccccCHHHhcCCCCCEEECcCCc
Confidence 5555555444444444 4456666666666666677777777778888888887
Q ss_pred ccccCCcccccCCCCcceeecccccccccCCccCCCCCCCCEEeccCccccccCCCCccCCCCCCeeeccccccCCcccC
Q 005045 142 LHGQLPTDVGLTLPNLKIFAGAVNYFTGSIPVSLSNASNLQVLDFAENGLTGTIPGNFGSLKDLVRLNFDQNELGSREIG 221 (717)
Q Consensus 142 l~~~l~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~ 221 (717)
+++.+|..+. .+++|+.|++++|.+.+.+|..+..+++|++|++++|++++.+|..|..+++|+.|++++|+++...
T Consensus 430 l~~~~p~~l~-~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~-- 506 (768)
T 3rgz_A 430 LSGTIPSSLG-SLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEI-- 506 (768)
T ss_dssp EESCCCGGGG-GCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCC--
T ss_pred ccCcccHHHh-cCCCCCEEECCCCcccCcCCHHHcCCCCceEEEecCCcccCcCCHHHhcCCCCCEEEccCCccCCcC--
Confidence 7766665543 6778888888888887777777888888888888888888777777888888888888888887654
Q ss_pred chhhhhhhccCCCCCEEEeecCcccCcCchhhhhccccccEEecCCCccCCCCCcc------------------------
Q 005045 222 DLNFLKFLANCTSLEVLGLARNSFGGEMPISIANLSTHLRRLTMGENLMHGNIPVG------------------------ 277 (717)
Q Consensus 222 ~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~~~~L~~L~l~~N~l~~~~~~~------------------------ 277 (717)
|.++..+++|++|+|++|.+++.+|..+..+ ++|+.|++++|.+.+.+|..
T Consensus 507 ----p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l-~~L~~L~Ls~N~l~g~ip~~~~~~~~~~~~~~~~~~~~~~~~~~ 581 (768)
T 3rgz_A 507 ----PKWIGRLENLAILKLSNNSFSGNIPAELGDC-RSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGKRYVYIKND 581 (768)
T ss_dssp ----CGGGGGCTTCCEEECCSSCCEEECCGGGGGC-TTCCEEECCSSEEESBCCGGGGTTTTCBCCSTTCSCEEEEEECC
T ss_pred ----ChHHhcCCCCCEEECCCCcccCcCCHHHcCC-CCCCEEECCCCccCCcCChHHhcccchhhhhccccccccccccc
Confidence 6677788888888888888888888888777 47888888888877665543
Q ss_pred ----------------------------------------------ccCCCCCCEEEccCCcCccccchhhhcCCCCCeE
Q 005045 278 ----------------------------------------------IGNLVNLNLLGLEGNNLSGSVPEVIGRLNKLEGL 311 (717)
Q Consensus 278 ----------------------------------------------~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L 311 (717)
+..+++|+.|||++|++++.+|..++.++.|+.|
T Consensus 582 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~g~~~~~~~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L 661 (768)
T 3rgz_A 582 GMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFIL 661 (768)
T ss_dssp SCCTTCCSSEEEEECTTCCGGGGGGGGGTCCSCTTSCEEEEECCCSCSSSBCCCEEECCSSCCBSCCCGGGGGCTTCCEE
T ss_pred cccccccccccccccccccchhhhccccccccccccceecccCchhhhccccccEEECcCCcccccCCHHHhccccCCEE
Confidence 3345678888888888888888888888889999
Q ss_pred EcccCcCCCCCCcccccccccceeecccccccccCCcCccCcCCCceEEeecccCCCCCCccc
Q 005045 312 GLNVNKFSGLIPSSLGNLTILTRLWMEENRLEGSIPPSLGNCQKLLVLNLSSNDLNGTIPKEV 374 (717)
Q Consensus 312 ~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~ 374 (717)
+|++|++++.+|..|+++++|+.|||++|+++|.+|..+..+++|+.||+++|+++|.+|+.-
T Consensus 662 ~Ls~N~l~g~ip~~l~~L~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~ls~N~l~g~iP~~~ 724 (768)
T 3rgz_A 662 NLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDLSNNNLSGPIPEMG 724 (768)
T ss_dssp ECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEECCCGGGGGCCCCSEEECCSSEEEEECCSSS
T ss_pred eCcCCccCCCCChHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECcCCcccccCCCch
Confidence 999999988888888888899999999999988888888888889999999999988888764
No 11
>3hyh_A Carbon catabolite-derepressing protein kinase; kinase domain, transferase, ATP-binding, carbohydrate metabo kinase, membrane; 2.20A {Saccharomyces cerevisiae} PDB: 3dae_A 2fh9_A 3mn3_A
Probab=100.00 E-value=6.8e-49 Score=392.91 Aligned_cols=246 Identities=24% Similarity=0.367 Sum_probs=186.7
Q ss_pred ccccccccccCcccccceEEEEeC-CCchhhhHHhHhh---hhhHHHHHHHHHHHHhcCCCCceeEEEEeeccccCCCCc
Q 005045 388 TDNFSKENLIGTGSFGSVYKGTLG-DGTIVAIKVLKLQ---QQGALKSFIDECNALKSTRHRNILRVITACSSVDLEGND 463 (717)
Q Consensus 388 ~~~y~~~~~ig~g~~g~v~~~~~~-~~~~vavK~~~~~---~~~~~~~~~~e~~~l~~l~h~ni~~~~~~~~~~~~~~~~ 463 (717)
.++|++.+.||+|+||.||+|+++ +|+.||+|++... ......++.+|++++++++||||+++++++ .+.+
T Consensus 12 ig~Y~i~~~lG~G~fg~V~~~~~~~~~~~vAiK~i~~~~~~~~~~~~~~~~Ei~il~~l~HpnIv~~~~~~-----~~~~ 86 (275)
T 3hyh_A 12 IGNYQIVKTLGEGSFGKVKLAYHTTTGQKVALKIINKKVLAKSDMQGRIEREISYLRLLRHPHIIKLYDVI-----KSKD 86 (275)
T ss_dssp --CCEEEEEEEC---CCEEEEECTTTCCEEEEEEEECC------CHHHHHHHHHHHHHCCCTTBCCEEEEE-----ECSS
T ss_pred eeCeEEEEEEecCcCeEEEEEEECCCCCEEEEEEEeHHHcCCHHHHHHHHHHHHHHHHCCCCCCCeEEEEE-----EECC
Confidence 368999999999999999999965 8999999998643 233457789999999999999999999994 4556
Q ss_pred eEEEEEecCCCCChhhhccCCCCCcccccccCHHHHHHHHHHHHHHHHHHHhcCCCCeeecCCCCCCEEeCCCCceEEee
Q 005045 464 FKALVFEFMSNGNLDQWLHPSPAEHYQFKKLSVIQRLNIAIDVASALDYLHHHCDTPIAHCDLKPSNVLLDKDMTAHVGD 543 (717)
Q Consensus 464 ~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~dlkp~NIll~~~~~~kl~D 543 (717)
..|+||||+ +|+|.+++... +.+++..++.++.||+.||+|||++ +|+||||||+||+++.+|.+||+|
T Consensus 87 ~~~ivmEy~-~g~L~~~l~~~-------~~l~e~~~~~~~~qi~~al~ylH~~---~IiHRDiKP~NILl~~~~~vkl~D 155 (275)
T 3hyh_A 87 EIIMVIEYA-GNELFDYIVQR-------DKMSEQEARRFFQQIISAVEYCHRH---KIVHRDLKPENLLLDEHLNVKIAD 155 (275)
T ss_dssp EEEEEEECC-CEEHHHHHHHS-------CSCCHHHHHHHHHHHHHHHHHHHHT---TCCCCCCCTTTEEECTTCCEEECC
T ss_pred EEEEEEeCC-CCCHHHHHHHc-------CCCCHHHHHHHHHHHHHHHHHHHHC---CcccccCChHHeEECCCCCEEEee
Confidence 899999999 67999998754 5799999999999999999999998 999999999999999999999999
Q ss_pred eccchhcccccCCCCCCcceeecccccccccCCCccCCC-C-CcccchhhHHHHHHHHHhCCCCCCCCCCCchhhhHHHH
Q 005045 544 FGLAKFLFEISDNPSKNQTVSIGLKGSIGYIPPEHMNGQ-V-SILGDIYSYGILLLEMFTGKRPTGDMFKDDFSIHMFVS 621 (717)
Q Consensus 544 fg~~~~~~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~-~-~~~sDvwslG~vl~elltg~~p~~~~~~~~~~~~~~~~ 621 (717)
||+|+.... ........||+.|+|||++.++ + +.++||||+||++|+|++|+.||.+... ........
T Consensus 156 FGla~~~~~--------~~~~~~~~GT~~Y~APE~~~~~~y~~~~~DiwSlGvily~lltg~~PF~~~~~--~~~~~~i~ 225 (275)
T 3hyh_A 156 FGLSNIMTD--------GNFLKTSCGSPNYAAPEVISGKLYAGPEVDVWSCGVILYVMLCRRLPFDDESI--PVLFKNIS 225 (275)
T ss_dssp SSCC-----------------------CTTSCHHHHSSSSCCCTHHHHHHHHHHHHHHHHSSCSSCCSSH--HHHHHHHH
T ss_pred cCCCeecCC--------CCccCCeeECcccCChhhhcCCCCCCChhhhHHHHHHHHHHHHCCCCCCCCCH--HHHHHHHH
Confidence 999986521 1122346799999999998775 3 6899999999999999999999965321 11111111
Q ss_pred hcCChhhhhhcCCCCCCCCCCcHHHHHHHHHHHHHHhhhhhhhcchhhhHHHHHHHHHHhhccCCCCcCCCCCHHHHHHH
Q 005045 622 MALPDHVMDILDPSMPLDEENDEEQIEEVIEEKEMMIHIDLEVNTKNKLEECFVSVLRIGLMCSTTSPRERIAMNVVVNN 701 (717)
Q Consensus 622 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~cl~~~p~~Rps~~eil~~ 701 (717)
...... +...+..+.+++.+||+.||++|||++|+++.
T Consensus 226 -----------~~~~~~-------------------------------p~~~s~~~~~li~~~L~~dP~~R~s~~eil~h 263 (275)
T 3hyh_A 226 -----------NGVYTL-------------------------------PKFLSPGAAGLIKRMLIVNPLNRISIHEIMQD 263 (275)
T ss_dssp -----------HTCCCC-------------------------------CTTSCHHHHHHHHHHSCSSGGGSCCHHHHHHC
T ss_pred -----------cCCCCC-------------------------------CCCCCHHHHHHHHHHccCChhHCcCHHHHHcC
Confidence 000000 01124557889999999999999999999863
No 12
>4fie_A Serine/threonine-protein kinase PAK 4; kinase domain, protein ATP binding, phosphorylation, transferase; HET: SEP ANP; 3.11A {Homo sapiens}
Probab=100.00 E-value=8.3e-49 Score=413.65 Aligned_cols=251 Identities=22% Similarity=0.322 Sum_probs=205.0
Q ss_pred ccccccccccccCcccccceEEEEeC-CCchhhhHHhHhhhhhHHHHHHHHHHHHhcCCCCceeEEEEeeccccCCCCce
Q 005045 386 KSTDNFSKENLIGTGSFGSVYKGTLG-DGTIVAIKVLKLQQQGALKSFIDECNALKSTRHRNILRVITACSSVDLEGNDF 464 (717)
Q Consensus 386 ~~~~~y~~~~~ig~g~~g~v~~~~~~-~~~~vavK~~~~~~~~~~~~~~~e~~~l~~l~h~ni~~~~~~~~~~~~~~~~~ 464 (717)
...+.|++.++||+|+||.||+|+++ +|+.||||++........+.+.+|++++++++||||+++++++. +.+.
T Consensus 148 dp~~~y~~~~~iG~G~fG~V~~a~~~~tg~~vAiK~i~~~~~~~~~~~~~Ei~il~~l~HpnIV~l~~~~~-----~~~~ 222 (423)
T 4fie_A 148 DPRSYLDNFIKIGEGSTGIVCIATVRSSGKLVAVKKMDLRKQQRRELLFNEVVIMRDYQHENVVEMYNSYL-----VGDE 222 (423)
T ss_dssp CGGGTEEEEEEEEECSSCEEEEEEETTTCCEEEEEEEESTTCSSGGGHHHHHHHHHHCCCTTBCCEEEEEE-----ETTE
T ss_pred ChhHhcEeeeEeccCcCcEEEEEEECCCCCEEEEEEEeccchhHHHHHHHHHHHHHhCCCCCCCceEEEEE-----ECCE
Confidence 34568999999999999999999965 79999999997665555677899999999999999999999954 4568
Q ss_pred EEEEEecCCCCChhhhccCCCCCcccccccCHHHHHHHHHHHHHHHHHHHhcCCCCeeecCCCCCCEEeCCCCceEEeee
Q 005045 465 KALVFEFMSNGNLDQWLHPSPAEHYQFKKLSVIQRLNIAIDVASALDYLHHHCDTPIAHCDLKPSNVLLDKDMTAHVGDF 544 (717)
Q Consensus 465 ~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~dlkp~NIll~~~~~~kl~Df 544 (717)
+|+|||||+||+|.+++.. ..+++..+..++.||+.||+|||++ +|+||||||+|||++.+|.+||+||
T Consensus 223 ~~iVmEy~~gG~L~~~i~~--------~~l~e~~~~~~~~qil~aL~ylH~~---~IiHRDiKp~NILl~~~g~vKl~DF 291 (423)
T 4fie_A 223 LWVVMEFLEGGALTDIVTH--------TRMNEEQIAAVCLAVLQALSVLHAQ---GVIHRDIKSDSILLTHDGRVKLSDF 291 (423)
T ss_dssp EEEEEECCTTEEHHHHHHH--------SCCCHHHHHHHHHHHHHHHHHHHHT---TEECCCCSTTTEEECTTCCEEECCC
T ss_pred EEEEEeCCCCCcHHHHHhc--------cCCCHHHHHHHHHHHHHHHHHHHHC---CeecccCCHHHEEEcCCCCEEEecC
Confidence 9999999999999999863 4589999999999999999999998 9999999999999999999999999
Q ss_pred ccchhcccccCCCCCCcceeecccccccccCCCccCC-CCCcccchhhHHHHHHHHHhCCCCCCCCCCCchhhhHHHHhc
Q 005045 545 GLAKFLFEISDNPSKNQTVSIGLKGSIGYIPPEHMNG-QVSILGDIYSYGILLLEMFTGKRPTGDMFKDDFSIHMFVSMA 623 (717)
Q Consensus 545 g~~~~~~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~-~~~~~sDvwslG~vl~elltg~~p~~~~~~~~~~~~~~~~~~ 623 (717)
|+|+.+.. .........||+.|||||++.+ .|+.++|||||||++|||++|..||.+... ......+...
T Consensus 292 Gla~~~~~-------~~~~~~~~~GTp~YmAPEvl~~~~y~~~~DiWSlGvilyeml~G~~PF~~~~~--~~~~~~i~~~ 362 (423)
T 4fie_A 292 GFCAQVSK-------EVPRRKSLVGTPYWMAPELISRLPYGPEVDIWSLGIMVIEMVDGEPPYFNEPP--LKAMKMIRDN 362 (423)
T ss_dssp TTCEECCS-------SCCCBCCCEECTTTCCHHHHTTCCBCTHHHHHHHHHHHHHHHHSSCTTTTSCH--HHHHHHHHHS
T ss_pred ccceECCC-------CCccccccccCcCcCCHHHHCCCCCCcHHHHHHHHHHHHHHHHCCCCCCCcCH--HHHHHHHHcC
Confidence 99987521 1223345679999999999766 489999999999999999999999965321 1111111111
Q ss_pred CChhhhhhcCCCCCCCCCCcHHHHHHHHHHHHHHhhhhhhhcchhhhHHHHHHHHHHhhccCCCCcCCCCCHHHHHH
Q 005045 624 LPDHVMDILDPSMPLDEENDEEQIEEVIEEKEMMIHIDLEVNTKNKLEECFVSVLRIGLMCSTTSPRERIAMNVVVN 700 (717)
Q Consensus 624 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~cl~~~p~~Rps~~eil~ 700 (717)
..+.+.. ...++..+.+|+.+||+.||++|||++|+++
T Consensus 363 --------~~~~~~~-------------------------------~~~~s~~~~dli~~~L~~dP~~R~ta~ell~ 400 (423)
T 4fie_A 363 --------LPPRLKN-------------------------------LHKVSPSLKGFLDRLLVRDPAQRATAAELLK 400 (423)
T ss_dssp --------CCCCCSC-------------------------------TTSSCHHHHHHHHHHSCSSTTTSCCHHHHTT
T ss_pred --------CCCCCcc-------------------------------cccCCHHHHHHHHHHcCCChhHCcCHHHHhc
Confidence 1111111 1112456789999999999999999999986
No 13
>3hmm_A TGF-beta receptor type-1; ALK5, kinase, inhibitor, quinazoline, aortic aneurysm, ATP-binding, craniosynostosis, disease mutation, disulfide bond; HET: 855; 1.70A {Homo sapiens} PDB: 1vjy_A* 3gxl_A* 3tzm_A* 2wot_A* 2wou_A* 1py5_A* 1rw8_A*
Probab=100.00 E-value=1.4e-48 Score=400.69 Aligned_cols=283 Identities=22% Similarity=0.270 Sum_probs=205.6
Q ss_pred ccccccccccCcccccceEEEEeCCCchhhhHHhHhhhhhHHHHHHHHHHHHhcCCCCceeEEEEeeccccCCCCceEEE
Q 005045 388 TDNFSKENLIGTGSFGSVYKGTLGDGTIVAIKVLKLQQQGALKSFIDECNALKSTRHRNILRVITACSSVDLEGNDFKAL 467 (717)
Q Consensus 388 ~~~y~~~~~ig~g~~g~v~~~~~~~~~~vavK~~~~~~~~~~~~~~~e~~~l~~l~h~ni~~~~~~~~~~~~~~~~~~~l 467 (717)
.++|.+.++||+|+||.||+|++ +|+.||||++...... ...++.|+..+.+++||||+++++++.... ......|+
T Consensus 2 ar~i~L~~~iG~G~fG~Vy~~~~-~g~~VAvK~l~~~~~~-~~~~e~Ei~~~~~l~HpNIv~l~g~~~~~~-~~~~~~~l 78 (303)
T 3hmm_A 2 ARTIVLQESIGKGRFGEVWRGKW-RGEEVAVKIFSSREER-SWFREAEIYQTVMLRHENILGFIAADNKDN-GTWTQLWL 78 (303)
T ss_dssp GGGEEEEEEEEECSSSEEEEEEE-TTEEEEEEEECGGGHH-HHHHHHHHHTSTTCCCTTBCCEEEEEEEEC-SSSEEEEE
T ss_pred CcEEEEEEEEeeCCCeEEEEEEE-CCEEEEEEEECccchh-hHHHHHHHHHHhcCCCCCCCcEEEEEEecC-CCceEEEE
Confidence 45789999999999999999998 5899999998754322 233445677777899999999999986532 12236899
Q ss_pred EEecCCCCChhhhccCCCCCcccccccCHHHHHHHHHHHHHHHHHHHhcC-----CCCeeecCCCCCCEEeCCCCceEEe
Q 005045 468 VFEFMSNGNLDQWLHPSPAEHYQFKKLSVIQRLNIAIDVASALDYLHHHC-----DTPIAHCDLKPSNVLLDKDMTAHVG 542 (717)
Q Consensus 468 v~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~i~~~i~~~l~~LH~~~-----~~~ivH~dlkp~NIll~~~~~~kl~ 542 (717)
||||+++|+|.++++. ..+++..+.+++.|++.||+|||+++ .++|+||||||+|||++.++.+||+
T Consensus 79 V~Ey~~~gsL~~~l~~--------~~l~~~~~~~i~~~ia~gl~ylH~~~~~~~~~~~IiHRDlKp~NILl~~~~~~Ki~ 150 (303)
T 3hmm_A 79 VSDYHEHGSLFDYLNR--------YTVTVEGMIKLALSTASGLAHLHMEIVGTQGKPAIAHRDLKSKNILVKKNGTCCIA 150 (303)
T ss_dssp EEECCTTCBHHHHHHH--------CCBCHHHHHHHHHHHHHHHHHHHCCBCSTTCBCCEECSCCCGGGEEECTTSCEEEC
T ss_pred EecCCCCCcHHHHHHh--------CCCCHHHHHHHHHHHHHHHHHHHHhhhhccCCCCEeeccCCcccEEECCCCCEEEE
Confidence 9999999999999964 35899999999999999999999752 3489999999999999999999999
Q ss_pred eeccchhcccccCCCCCCcceeecccccccccCCCccCCC-------CCcccchhhHHHHHHHHHhCCCCCCCCCCCchh
Q 005045 543 DFGLAKFLFEISDNPSKNQTVSIGLKGSIGYIPPEHMNGQ-------VSILGDIYSYGILLLEMFTGKRPTGDMFKDDFS 615 (717)
Q Consensus 543 Dfg~~~~~~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~-------~~~~sDvwslG~vl~elltg~~p~~~~~~~~~~ 615 (717)
|||+|+........ .........||+.|+|||++.+. ++.++|||||||++|||+||..||.........
T Consensus 151 DFGla~~~~~~~~~---~~~~~~~~~GT~~ymAPE~l~~~~~~~~~~~~~k~DVwS~Gvvl~El~tg~~~~~~~~~~~~p 227 (303)
T 3hmm_A 151 DLGLAVRHDSATDT---IDIAPNHRVGTKRYMAPEVLDDSINMKHFESFKRADIYAMGLVFWEIARRCSIGGIHEDYQLP 227 (303)
T ss_dssp CCTTCEEEETTTTE---ESCC-----CCGGGCCHHHHTTCSCTTCHHHHHHHHHHHHHHHHHHHHHTBCBTTBCCCCCCT
T ss_pred eCCCCccccCCCCc---eeeecccccccccccCHHHhcccccccCCccChhHhhhhHHHHHHHHHHCCCCCCcccccccc
Confidence 99999865322111 11122345799999999997653 567899999999999999999887544322111
Q ss_pred hhHHHHhcC-Chhhh-hhcCCCCCCCCCCcHHHHHHHHHHHHHHhhhhhhhcchhhhHHHHHHHHHHhhccCCCCcCCCC
Q 005045 616 IHMFVSMAL-PDHVM-DILDPSMPLDEENDEEQIEEVIEEKEMMIHIDLEVNTKNKLEECFVSVLRIGLMCSTTSPRERI 693 (717)
Q Consensus 616 ~~~~~~~~~-~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~cl~~~p~~Rp 693 (717)
+........ ...+. .+.+..+ ++.........+++..+.+++.+||+.||++||
T Consensus 228 ~~~~~~~~~~~~~~~~~~~~~~~------------------------rp~~p~~~~~~~~~~~l~~li~~cl~~dP~~RP 283 (303)
T 3hmm_A 228 YYDLVPSDPSVEEMRKVVCEQKL------------------------RPNIPNRWQSCEALRVMAKIMRECWYANGAARL 283 (303)
T ss_dssp TTTTSCSSCCHHHHHHHHTTSCC------------------------CCCCCGGGGSSHHHHHHHHHHHTTCCSSGGGSC
T ss_pred chhcccccchHHHHHHHHhcccC------------------------CCCCCccccchHHHHHHHHHHHHHcccCHhHCc
Confidence 110000000 00011 1111111 111112223445678899999999999999999
Q ss_pred CHHHHHHHHHHHHHH
Q 005045 694 AMNVVVNNLKTIRNC 708 (717)
Q Consensus 694 s~~eil~~l~~i~~~ 708 (717)
||+||++.|+++.++
T Consensus 284 t~~ei~~~L~~l~~~ 298 (303)
T 3hmm_A 284 TALRIKKTLSQLSQQ 298 (303)
T ss_dssp CHHHHHHHHHHHHHC
T ss_pred CHHHHHHHHHHHHHH
Confidence 999999999999865
No 14
>4ase_A Vascular endothelial growth factor receptor 2; transferase, angiogenesis, signaling protein, phosphorylatio receptor, inhibitor; HET: AV9; 1.83A {Homo sapiens} PDB: 4agd_A* 4asd_A* 4agc_A*
Probab=100.00 E-value=5.5e-48 Score=401.81 Aligned_cols=279 Identities=21% Similarity=0.336 Sum_probs=216.8
Q ss_pred cCCCCcccccccccccccccccCcccccceEEEEeC------CCchhhhHHhHhhh-hhHHHHHHHHHHHHhcCCC-Cce
Q 005045 376 QSGMSYSDISKSTDNFSKENLIGTGSFGSVYKGTLG------DGTIVAIKVLKLQQ-QGALKSFIDECNALKSTRH-RNI 447 (717)
Q Consensus 376 ~~~~s~~~~~~~~~~y~~~~~ig~g~~g~v~~~~~~------~~~~vavK~~~~~~-~~~~~~~~~e~~~l~~l~h-~ni 447 (717)
...+..+.+....++|++.++||+|+||.||+|.+. .++.||||.+.... ....+.+.+|+++++++.| |||
T Consensus 51 ~lp~~~~~wEi~~~~~~l~~~LG~G~fG~Vy~a~~~~~~~~~~~k~VAvK~l~~~~~~~~~~~~~~E~~il~~l~hhpnI 130 (353)
T 4ase_A 51 RLPYDASKWEFPRDRLKLGKPLGRGAFGQVIEADAFGIDKTATCRTVAVKMLKEGATHSEHRALMSELKILIHIGHHLNV 130 (353)
T ss_dssp GSCCCHHHHBCCGGGEEEEEEEEECSSEEEEEEEEETSSSTTCEEEEEEEEECTTCCHHHHHHHHHHHHHHHHHCCCTTB
T ss_pred cCCCCCcccEecHHHeEEeeEEecCCCeEEEEEEEcCCCcccCCeEEEEEEEccccChHHHHHHHHHHHHHHHcCCCCcE
Confidence 334555567777899999999999999999999853 24578999886543 3345779999999999965 899
Q ss_pred eEEEEeeccccCCCCceEEEEEecCCCCChhhhccCCCCC---------cccccccCHHHHHHHHHHHHHHHHHHHhcCC
Q 005045 448 LRVITACSSVDLEGNDFKALVFEFMSNGNLDQWLHPSPAE---------HYQFKKLSVIQRLNIAIDVASALDYLHHHCD 518 (717)
Q Consensus 448 ~~~~~~~~~~~~~~~~~~~lv~e~~~~~~L~~~l~~~~~~---------~~~~~~~~~~~~~~i~~~i~~~l~~LH~~~~ 518 (717)
++++++|. ..++..++|||||++|+|.++++..... ......+++..+..++.|||.||+|||++
T Consensus 131 V~l~g~~~----~~~~~~~iV~Ey~~~G~L~~~L~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~qia~gl~yLH~~-- 204 (353)
T 4ase_A 131 VNLLGACT----KPGGPLMVIVEFCKFGNLSTYLRSKRNEFVPYKVAPEDLYKDFLTLEHLICYSFQVAKGMEFLASR-- 204 (353)
T ss_dssp CCEEEEEC----CTTSCCEEEEECCTTEEHHHHHHHTGGGBCCC-------CTTCBCHHHHHHHHHHHHHHHHHHHHT--
T ss_pred EEEEEEEE----ecCCEEEEEEEcCCCCCHHHHHHhcccccccccccchhhccccCCHHHHHHHHHHHHHHHHhHhhC--
Confidence 99999973 3345789999999999999999753211 01124589999999999999999999998
Q ss_pred CCeeecCCCCCCEEeCCCCceEEeeeccchhcccccCCCCCCcceeecccccccccCCCccC-CCCCcccchhhHHHHHH
Q 005045 519 TPIAHCDLKPSNVLLDKDMTAHVGDFGLAKFLFEISDNPSKNQTVSIGLKGSIGYIPPEHMN-GQVSILGDIYSYGILLL 597 (717)
Q Consensus 519 ~~ivH~dlkp~NIll~~~~~~kl~Dfg~~~~~~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~-~~~~~~sDvwslG~vl~ 597 (717)
+||||||||+|||++.++.+||+|||+|+.... ...........||+.|||||++. +.++.++|||||||++|
T Consensus 205 -~iiHRDLK~~NILl~~~~~vKi~DFGlar~~~~-----~~~~~~~~~~~gt~~ymAPE~l~~~~y~~ksDVwS~Gv~l~ 278 (353)
T 4ase_A 205 -KCIHRDLAARNILLSEKNVVKICDFGLARDIYK-----DPDYVRKGDARLPLKWMAPETIFDRVYTIQSDVWSFGVLLW 278 (353)
T ss_dssp -TCCCSCCSGGGEEECGGGCEEECCCGGGSCTTT-----CTTSEEETTEEECGGGCCHHHHHHCCCCHHHHHHHHHHHHH
T ss_pred -CeecCccCccceeeCCCCCEEECcchhhhhccc-----CCCceeeccccccccccCHHHHhcCCCCCcccEeehHHHHH
Confidence 999999999999999999999999999986521 12223344567899999999965 56899999999999999
Q ss_pred HHHh-CCCCCCCCCCCchhhhHHHHhcCChhhhhhcCCCCCCCCCCcHHHHHHHHHHHHHHhhhhhhhcchhhhHHHHHH
Q 005045 598 EMFT-GKRPTGDMFKDDFSIHMFVSMALPDHVMDILDPSMPLDEENDEEQIEEVIEEKEMMIHIDLEVNTKNKLEECFVS 676 (717)
Q Consensus 598 ellt-g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 676 (717)
||+| |..||.+...... +...+... ..+. .++.++.+
T Consensus 279 El~t~G~~Pf~~~~~~~~-~~~~i~~g--------~~~~---------------------------------~p~~~~~~ 316 (353)
T 4ase_A 279 EIFSLGASPYPGVKIDEE-FCRRLKEG--------TRMR---------------------------------APDYTTPE 316 (353)
T ss_dssp HHTTTSCCSSTTCCCSHH-HHHHHHHT--------CCCC---------------------------------CCTTCCHH
T ss_pred HHHhCCCCCCCCCCHHHH-HHHHHHcC--------CCCC---------------------------------CCccCCHH
Confidence 9998 9999976533221 11111110 0001 11233667
Q ss_pred HHHHhhccCCCCcCCCCCHHHHHHHHHHHHHH
Q 005045 677 VLRIGLMCSTTSPRERIAMNVVVNNLKTIRNC 708 (717)
Q Consensus 677 l~~li~~cl~~~p~~Rps~~eil~~l~~i~~~ 708 (717)
+.+++.+||+.||++||||+||++.|+.+.+.
T Consensus 317 ~~~li~~c~~~dP~~RPt~~eil~~L~~llq~ 348 (353)
T 4ase_A 317 MYQTMLDCWHGEPSQRPTFSELVEHLGNLLQA 348 (353)
T ss_dssp HHHHHHHHTCSSGGGSCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCcChhHCcCHHHHHHHHHHHHHH
Confidence 88999999999999999999999999998764
No 15
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=100.00 E-value=1.2e-46 Score=437.99 Aligned_cols=364 Identities=33% Similarity=0.506 Sum_probs=249.0
Q ss_pred cceecEEEcCCCcCcCCCCcCCcCCCCCCEEECCCCcccccCCcCCCCC-CCCCEEEccCccccccCCccccCCCCCCEE
Q 005045 9 HLMTQDLNLTYNYLSGKIPTNLSHCTELRSFEASVNDFVGQIPNQLSSL-TKLEIIGLGGSNLTGNVPAWIGNFSSLKAL 87 (717)
Q Consensus 9 ~~~~~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l-~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L 87 (717)
..++++|+|++|++++.+|.. .+++|++|+|++|.+++.+|..+..+ ++|++|+|++|.+++.+|..|+.+++|++|
T Consensus 246 l~~L~~L~Ls~n~l~~~~~~~--~l~~L~~L~L~~n~l~~~ip~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L 323 (768)
T 3rgz_A 246 CTELKLLNISSNQFVGPIPPL--PLKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESL 323 (768)
T ss_dssp CSSCCEEECCSSCCEESCCCC--CCTTCCEEECCSSEEEESCCCCSCTTCTTCSEEECCSSEEEECCCGGGGGCTTCCEE
T ss_pred CCCCCEEECCCCcccCccCcc--ccCCCCEEECcCCccCCccCHHHHhhcCcCCEEECcCCcCCCccchHHhcCCCccEE
Confidence 348899999999999888875 89999999999999999999998876 999999999999999999999999999999
Q ss_pred eccCCcCcccCChh-hhccCCCCeEeccCCCCCCCCCccccCCC-CccEEEcccCcccccCCccccc-CCCCcceeeccc
Q 005045 88 SLAWNNLRGSIPNE-LGQLSGLGFFTLYGNFISGIIPSSIYNIS-SIYYFSVTQNQLHGQLPTDVGL-TLPNLKIFAGAV 164 (717)
Q Consensus 88 ~L~~n~l~~~~~~~-~~~l~~L~~L~L~~N~i~~~~~~~~~~l~-~L~~L~L~~N~l~~~l~~~~~~-~l~~L~~L~l~~ 164 (717)
+|++|++++.+|.. |..+++|++|+|++|.+++..|..+.+++ +|++|+|++|.+++.+|..+.. .+++|+.|++++
T Consensus 324 ~L~~n~l~~~ip~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~~L~~L~Ls~N~l~~~~~~~~~~~~~~~L~~L~L~~ 403 (768)
T 3rgz_A 324 ALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQN 403 (768)
T ss_dssp ECCSSEEEEECCHHHHTTCTTCCEEECCSSEEEECCCTTHHHHTTTCSEEECCSSEEEEECCTTTTCSTTCCCCEEECCS
T ss_pred ECCCCcccCcCCHHHHhcCCCCCEEeCcCCccCccccHHHHhhhcCCcEEEccCCCcCCCcChhhhhcccCCccEEECCC
Confidence 99999999788865 99999999999999999988898888876 7778888777777655554432 145555555555
Q ss_pred ccccccCCccCCCCCCCCEEeccCccccccCCCCccCCCCCCeeeccccccCCcccCch------------------hhh
Q 005045 165 NYFTGSIPVSLSNASNLQVLDFAENGLTGTIPGNFGSLKDLVRLNFDQNELGSREIGDL------------------NFL 226 (717)
Q Consensus 165 n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~------------------~~~ 226 (717)
|.+.+.+|..+.++++|++|++++|.+++..|..|..+++|+.|++++|.+.......+ ..+
T Consensus 404 n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p 483 (768)
T 3rgz_A 404 NGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIP 483 (768)
T ss_dssp SEEEEECCGGGGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCC
T ss_pred CccccccCHHHhcCCCCCEEECcCCcccCcccHHHhcCCCCCEEECCCCcccCcCCHHHcCCCCceEEEecCCcccCcCC
Confidence 55555555555555555555555555555555555555555555555555543320000 003
Q ss_pred hhhccCCCCCEEEeecCcccCcCchhhhhccccccEEecCCCccCCCCCccccCCCCCCEEEccCCcCccccchhhh---
Q 005045 227 KFLANCTSLEVLGLARNSFGGEMPISIANLSTHLRRLTMGENLMHGNIPVGIGNLVNLNLLGLEGNNLSGSVPEVIG--- 303 (717)
Q Consensus 227 ~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~~~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~--- 303 (717)
..+.++++|++|+|++|++++.+|..+..+ ++|++|++++|++.+.+|..+.++++|+.|+|++|++++.+|..+.
T Consensus 484 ~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l-~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~~~ 562 (768)
T 3rgz_A 484 SGLSNCTNLNWISLSNNRLTGEIPKWIGRL-ENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQS 562 (768)
T ss_dssp GGGGGCTTCCEEECCSSCCCSCCCGGGGGC-TTCCEEECCSSCCEEECCGGGGGCTTCCEEECCSSEEESBCCGGGGTTT
T ss_pred HHHhcCCCCCEEEccCCccCCcCChHHhcC-CCCCEEECCCCcccCcCCHHHcCCCCCCEEECCCCccCCcCChHHhccc
Confidence 445555555555555555555555555554 3555555555555555555555555555555555555544443322
Q ss_pred -------------------------------------------------------------------cCCCCCeEEcccC
Q 005045 304 -------------------------------------------------------------------RLNKLEGLGLNVN 316 (717)
Q Consensus 304 -------------------------------------------------------------------~l~~L~~L~Ls~N 316 (717)
.+++|+.|+|++|
T Consensus 563 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~g~~~~~~~~l~~L~~LdLs~N 642 (768)
T 3rgz_A 563 GKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYN 642 (768)
T ss_dssp TCBCCSTTCSCEEEEEECCSCCTTCCSSEEEEECTTCCGGGGGGGGGTCCSCTTSCEEEEECCCSCSSSBCCCEEECCSS
T ss_pred chhhhhccccccccccccccccccccccccccccccccchhhhccccccccccccceecccCchhhhccccccEEECcCC
Confidence 1344556666666
Q ss_pred cCCCCCCcccccccccceeecccccccccCCcCccCcCCCceEEeecccCCCCCCcccc
Q 005045 317 KFSGLIPSSLGNLTILTRLWMEENRLEGSIPPSLGNCQKLLVLNLSSNDLNGTIPKEVR 375 (717)
Q Consensus 317 ~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~ 375 (717)
++++.+|..|++++.|+.|+|++|+++|.+|..++.+++|+.|||++|.++|.+|..+.
T Consensus 643 ~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~l~~L~~L~~LdLs~N~l~g~ip~~l~ 701 (768)
T 3rgz_A 643 MLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMS 701 (768)
T ss_dssp CCBSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEECCCGGGG
T ss_pred cccccCCHHHhccccCCEEeCcCCccCCCCChHHhCCCCCCEEECCCCcccCcCChHHh
Confidence 66666666666666666666666666666666666666666666666666666665543
No 16
>3ubd_A Ribosomal protein S6 kinase alpha-3; kinase-inhibitor complex, induced FIT, transferase-transfera inhibitor complex; HET: SL0; 1.53A {Mus musculus} PDB: 4el9_A* 3g51_A* 2z7q_A* 2z7r_A* 2z7s_A*
Probab=100.00 E-value=2e-48 Score=395.01 Aligned_cols=199 Identities=28% Similarity=0.384 Sum_probs=165.5
Q ss_pred cccccccccCcccccceEEEEeC----CCchhhhHHhHhhh--hhHHHHHHHHHHHHhcCCCCceeEEEEeeccccCCCC
Q 005045 389 DNFSKENLIGTGSFGSVYKGTLG----DGTIVAIKVLKLQQ--QGALKSFIDECNALKSTRHRNILRVITACSSVDLEGN 462 (717)
Q Consensus 389 ~~y~~~~~ig~g~~g~v~~~~~~----~~~~vavK~~~~~~--~~~~~~~~~e~~~l~~l~h~ni~~~~~~~~~~~~~~~ 462 (717)
++|++.+.||+|+||.||+|+.. +++.||+|++.... .....++.+|++++++++||||+++++++ .++
T Consensus 24 ~~Y~i~~~lG~G~fg~Vy~a~~~~~~~~~~~vAiK~i~~~~~~~~~~~~~~~E~~il~~l~HpnIv~l~~~~-----~~~ 98 (304)
T 3ubd_A 24 SQFELLKVLGQGSFGKVFLVKKISGSDARQLYAMKVLKKATLKVRDRVRTKMERDILVEVNHPFIVKLHYAF-----QTE 98 (304)
T ss_dssp GGEEEEEEEECGGGCEEEEEEECSSTTTTCEEEEEEEESEEEEEEECC------CCCCCCCCTTEECEEEEE-----EET
T ss_pred cccEEEEEEecCCCeEEEEEEEccCCCCCEEEEEEEEehHHcChHHHHHHHHHHHHHHHCCCCCCCeEEEEE-----EEC
Confidence 58999999999999999999852 57789999986432 22345688899999999999999999995 445
Q ss_pred ceEEEEEecCCCCChhhhccCCCCCcccccccCHHHHHHHHHHHHHHHHHHHhcCCCCeeecCCCCCCEEeCCCCceEEe
Q 005045 463 DFKALVFEFMSNGNLDQWLHPSPAEHYQFKKLSVIQRLNIAIDVASALDYLHHHCDTPIAHCDLKPSNVLLDKDMTAHVG 542 (717)
Q Consensus 463 ~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~dlkp~NIll~~~~~~kl~ 542 (717)
+..|+||||++||+|.+++.+. +.+++..+..++.||+.||+|||++ +|+||||||+|||++.+|.+||+
T Consensus 99 ~~~~ivmEy~~gg~L~~~l~~~-------~~l~e~~~~~~~~qi~~aL~ylH~~---~IiHRDlKp~NILl~~~g~vKl~ 168 (304)
T 3ubd_A 99 GKLYLILDFLRGGDLFTRLSKE-------VMFTEEDVKFYLAELALALDHLHSL---GIIYRDLKPENILLDEEGHIKLT 168 (304)
T ss_dssp TEEEEEECCCTTCEEHHHHHHH-------CCCCHHHHHHHHHHHHHHHHHHHHT---TCCCSSCCGGGEEECTTSCEEEE
T ss_pred CEEEEEEEcCCCCCHHHHHHhc-------CCCCHHHHHHHHHHHHHHHHHHHHC---CCcCCCCCHHHeEEcCCCCEEec
Confidence 6899999999999999999754 5799999999999999999999998 99999999999999999999999
Q ss_pred eeccchhcccccCCCCCCcceeecccccccccCCCccCC-CCCcccchhhHHHHHHHHHhCCCCCCCC
Q 005045 543 DFGLAKFLFEISDNPSKNQTVSIGLKGSIGYIPPEHMNG-QVSILGDIYSYGILLLEMFTGKRPTGDM 609 (717)
Q Consensus 543 Dfg~~~~~~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~-~~~~~sDvwslG~vl~elltg~~p~~~~ 609 (717)
|||+|+..... ........||+.|+|||++.+ .++.++||||+||++|||++|+.||.+.
T Consensus 169 DFGla~~~~~~-------~~~~~~~~GT~~YmAPE~~~~~~y~~~~DiwSlGvilyemltG~~PF~~~ 229 (304)
T 3ubd_A 169 DFGLSKESIDH-------EKKAYSFCGTVEYMAPEVVNRRGHTQSADWWSFGVLMFEMLTGTLPFQGK 229 (304)
T ss_dssp SSEEEEC------------CCCCSCCCCGGGCCHHHHHTSCCCTHHHHHHHHHHHHHHHHSSCSSCCS
T ss_pred ccccceeccCC-------CccccccccCcccCCHHHhccCCCCCCCcccchHHHHHHHHhCCCCCCCc
Confidence 99999864211 122334679999999999765 4899999999999999999999999754
No 17
>4g31_A Eukaryotic translation initiation factor 2-alpha; deletion mutant, catalytic domain, synthetic inhibitor, TRAN transferase inhibitor complex; HET: 0WH; 2.28A {Homo sapiens} PDB: 4g34_A*
Probab=100.00 E-value=6.4e-47 Score=386.06 Aligned_cols=261 Identities=24% Similarity=0.393 Sum_probs=187.9
Q ss_pred ccccccccccCcccccceEEEEeC-CCchhhhHHhHhhh-hhHHHHHHHHHHHHhcCCCCceeEEEEeeccccC------
Q 005045 388 TDNFSKENLIGTGSFGSVYKGTLG-DGTIVAIKVLKLQQ-QGALKSFIDECNALKSTRHRNILRVITACSSVDL------ 459 (717)
Q Consensus 388 ~~~y~~~~~ig~g~~g~v~~~~~~-~~~~vavK~~~~~~-~~~~~~~~~e~~~l~~l~h~ni~~~~~~~~~~~~------ 459 (717)
.++|++++.||+|+||.||+|+++ +|+.||+|++.... ....+.+.+|++++++++||||+++++++...+.
T Consensus 4 l~dy~~~~~lG~G~fg~V~~a~~~~~~~~vAiK~i~~~~~~~~~~~~~~E~~il~~l~HpnIV~~~~~~~~~~~~~~~~~ 83 (299)
T 4g31_A 4 LTDFEPIQCLGRGGFGVVFEAKNKVDDCNYAIKRIRLPNRELAREKVMREVKALAKLEHPGIVRYFNAWLEKNTTEKLQP 83 (299)
T ss_dssp HHHEEEEEEEEECC--EEEEEEETTTCCEEEEEEEEECSSHHHHHHHHHHHHHHTTCCCTTBCCEEEEEEEEC-------
T ss_pred chhCEEeeEEecCCCeEEEEEEECCCCCEEEEEEEeccCCHHHHHHHHHHHHHHHhCCCCCCCeEEEEEEecCccccccc
Confidence 357999999999999999999965 89999999986543 3445788999999999999999999998754331
Q ss_pred -CCCceEEEEEecCCCCChhhhccCCCCCcccccccCHHHHHHHHHHHHHHHHHHHhcCCCCeeecCCCCCCEEeCCCCc
Q 005045 460 -EGNDFKALVFEFMSNGNLDQWLHPSPAEHYQFKKLSVIQRLNIAIDVASALDYLHHHCDTPIAHCDLKPSNVLLDKDMT 538 (717)
Q Consensus 460 -~~~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~dlkp~NIll~~~~~ 538 (717)
......|+|||||++|+|.+++.... .....++..++.++.||+.||+|||++ +|+||||||+|||++.+|.
T Consensus 84 ~~~~~~l~ivmE~~~gg~L~~~l~~~~----~~~~~~~~~~~~i~~qi~~al~ylH~~---~IiHRDlKp~NILl~~~~~ 156 (299)
T 4g31_A 84 SSPKVYLYIQMQLCRKENLKDWMNGRC----TIEERERSVCLHIFLQIAEAVEFLHSK---GLMHRDLKPSNIFFTMDDV 156 (299)
T ss_dssp ---CEEEEEEEECCCSCCHHHHHHTCC----SGGGSCHHHHHHHHHHHHHHHHHHHHT---TCCCCCCCGGGEEECTTCC
T ss_pred cCCCcEEEEEEecCCCCcHHHHHHhcC----CCChhHHHHHHHHHHHHHHHHHHHHHC---cCccccCcHHHeEECCCCc
Confidence 12335799999999999999997653 123456778899999999999999998 9999999999999999999
Q ss_pred eEEeeeccchhcccccCCCC-----CCcceeecccccccccCCCccCCC-CCcccchhhHHHHHHHHHhCCCCCCCCCCC
Q 005045 539 AHVGDFGLAKFLFEISDNPS-----KNQTVSIGLKGSIGYIPPEHMNGQ-VSILGDIYSYGILLLEMFTGKRPTGDMFKD 612 (717)
Q Consensus 539 ~kl~Dfg~~~~~~~~~~~~~-----~~~~~~~~~~~~~~y~aPE~~~~~-~~~~sDvwslG~vl~elltg~~p~~~~~~~ 612 (717)
+||+|||+|+.......... ..........||+.|||||++.++ ++.++|||||||++|||++ ||....+
T Consensus 157 vKl~DFGla~~~~~~~~~~~~~~~~~~~~~~~~~~GT~~YmAPE~~~~~~y~~~~DiwSlGvilyell~---Pf~~~~~- 232 (299)
T 4g31_A 157 VKVGDFGLVTAMDQDEEEQTVLTPMPAYARHTGQVGTKLYMSPEQIHGNSYSHKVDIFSLGLILFELLY---PFSTQME- 232 (299)
T ss_dssp EEECCCCCC--------------------------CCCTTSCHHHHTTCCCCTHHHHHHHHHHHHHHHS---CCSSHHH-
T ss_pred EEEccCccceecCCCccccccccccccccccCCcccCccccCHHHHcCCCCCCHHHHHHHHHHHHHHcc---CCCCccH-
Confidence 99999999987633221110 111223346799999999997764 8999999999999999996 7643100
Q ss_pred chhhhHHHHhcCChhhhhhcCCCCCCCCCCcHHHHHHHHHHHHHHhhhhhhhcchhhhHHHHHHHHHHhhccCCCCcCCC
Q 005045 613 DFSIHMFVSMALPDHVMDILDPSMPLDEENDEEQIEEVIEEKEMMIHIDLEVNTKNKLEECFVSVLRIGLMCSTTSPRER 692 (717)
Q Consensus 613 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~cl~~~p~~R 692 (717)
.. .. +..+.....+ +...+......+++.+||+.||++|
T Consensus 233 --~~-~~--------~~~~~~~~~p------------------------------~~~~~~~~~~~~li~~~L~~dP~~R 271 (299)
T 4g31_A 233 --RV-RT--------LTDVRNLKFP------------------------------PLFTQKYPCEYVMVQDMLSPSPMER 271 (299)
T ss_dssp --HH-HH--------HHHHHTTCCC------------------------------HHHHHHCHHHHHHHHHHTCSSGGGS
T ss_pred --HH-HH--------HHHHhcCCCC------------------------------CCCcccCHHHHHHHHHHcCCChhHC
Confidence 00 00 0011110000 0112223445789999999999999
Q ss_pred CCHHHHHH
Q 005045 693 IAMNVVVN 700 (717)
Q Consensus 693 ps~~eil~ 700 (717)
||+.|+++
T Consensus 272 ps~~eil~ 279 (299)
T 4g31_A 272 PEAINIIE 279 (299)
T ss_dssp CCHHHHHT
T ss_pred cCHHHHhc
Confidence 99999986
No 18
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=100.00 E-value=2e-44 Score=395.27 Aligned_cols=369 Identities=20% Similarity=0.227 Sum_probs=313.7
Q ss_pred cceeeCCcc-eecEEEcCCCcCcCCCCcCCcCCCCCCEEECCCCcccccC-CcCCCCCCCCCEEEccCccccccCCcccc
Q 005045 2 ELIMIPEHL-MTQDLNLTYNYLSGKIPTNLSHCTELRSFEASVNDFVGQI-PNQLSSLTKLEIIGLGGSNLTGNVPAWIG 79 (717)
Q Consensus 2 ~l~~~p~~~-~~~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~-p~~~~~l~~L~~L~L~~n~l~~~~p~~~~ 79 (717)
+++.+|... .+++|+|++|++++..|..|+++++|++|+|++|.+.+.+ +..|.++++|++|+|++|.+++..|..|.
T Consensus 21 ~l~~lp~l~~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~ 100 (455)
T 3v47_A 21 GLHQVPELPAHVNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYNQFLQLETGAFN 100 (455)
T ss_dssp CCSSCCCCCTTCCEEECCSSCCCEECTTTTSSCTTCCEEECCCCSTTCEECTTTTTTCTTCCEEECTTCTTCEECTTTTT
T ss_pred CcccCCCCCCccCEEEecCCccCcCChhHhccCccccEEECcCCcccceECcccccccccCCEEeCCCCccCccChhhcc
Confidence 356677733 7899999999999888999999999999999999987444 66799999999999999999988899999
Q ss_pred CCCCCCEEeccCCcCcccCChh--hhccCCCCeEeccCCCCCCCCCcc-ccCCCCccEEEcccCcccccCCcccccCC--
Q 005045 80 NFSSLKALSLAWNNLRGSIPNE--LGQLSGLGFFTLYGNFISGIIPSS-IYNISSIYYFSVTQNQLHGQLPTDVGLTL-- 154 (717)
Q Consensus 80 ~l~~L~~L~L~~n~l~~~~~~~--~~~l~~L~~L~L~~N~i~~~~~~~-~~~l~~L~~L~L~~N~l~~~l~~~~~~~l-- 154 (717)
++++|++|+|++|++++..+.. |..+++|++|+|++|.+++..|.. |.++++|++|+|++|.+++..+..+. .+
T Consensus 101 ~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~-~l~~ 179 (455)
T 3v47_A 101 GLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFNKVKSICEEDLL-NFQG 179 (455)
T ss_dssp TCTTCCEEECTTSCCBTHHHHSSTTTTCTTCCEEECCSSBCCSCCCCGGGGGCTTCCEEECTTCCBSCCCTTTSG-GGTT
T ss_pred CcccCCEEeCCCCCCCccccCcccccCcccCCEEECCCCccCccCcccccCCCCcccEEeCCCCcccccChhhhh-cccc
Confidence 9999999999999998755544 899999999999999999887776 88999999999999999854454433 33
Q ss_pred CCcceeecccccccccCCccC--------CCCCCCCEEeccCccccccCCCCccCC---CCCCeeeccccccCCcccCch
Q 005045 155 PNLKIFAGAVNYFTGSIPVSL--------SNASNLQVLDFAENGLTGTIPGNFGSL---KDLVRLNFDQNELGSREIGDL 223 (717)
Q Consensus 155 ~~L~~L~l~~n~l~~~~~~~~--------~~l~~L~~L~l~~N~l~~~~~~~~~~l---~~L~~L~l~~N~l~~~~~~~~ 223 (717)
.+|+.|++++|.+....+..+ ..+++|++|++++|++++..|..+... ++|+.|++++|.+.....+..
T Consensus 180 ~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~ 259 (455)
T 3v47_A 180 KHFTLLRLSSITLQDMNEYWLGWEKCGNPFKNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILSNSYNMGSSFGHT 259 (455)
T ss_dssp CEEEEEECTTCBCTTCSTTCTTHHHHCCTTTTCEEEEEECTTSCCCHHHHHHHHHHTTTCCEEEEECTTCTTTSCCTTCC
T ss_pred ccccccccccCcccccchhhccccccccccccceeeeEecCCCcccccchhhhhccccccceeeEeeccccccccccchh
Confidence 789999999999987665443 367899999999999988777766544 889999999886654332111
Q ss_pred hh----hhhhc--cCCCCCEEEeecCcccCcCchhhhhccccccEEecCCCccCCCCCccccCCCCCCEEEccCCcCccc
Q 005045 224 NF----LKFLA--NCTSLEVLGLARNSFGGEMPISIANLSTHLRRLTMGENLMHGNIPVGIGNLVNLNLLGLEGNNLSGS 297 (717)
Q Consensus 224 ~~----~~~~~--~l~~L~~L~L~~N~l~~~~p~~~~~~~~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~ 297 (717)
.+ ...+. ..++|+.|++++|.+++..|..+..+ ++|++|++++|.+.+..+..|.++++|++|+|++|++++.
T Consensus 260 ~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l-~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~ 338 (455)
T 3v47_A 260 NFKDPDNFTFKGLEASGVKTCDLSKSKIFALLKSVFSHF-TDLEQLTLAQNEINKIDDNAFWGLTHLLKLNLSQNFLGSI 338 (455)
T ss_dssp SSCCCCTTTTGGGTTSCCCEEECCSSCCCEECTTTTTTC-TTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEE
T ss_pred hhccCcccccccccccCceEEEecCccccccchhhcccC-CCCCEEECCCCcccccChhHhcCcccCCEEECCCCccCCc
Confidence 00 11122 23689999999999998888888887 5999999999999988899999999999999999999988
Q ss_pred cchhhhcCCCCCeEEcccCcCCCCCCcccccccccceeecccccccccCCcCccCcCCCceEEeecccCCCCCCc
Q 005045 298 VPEVIGRLNKLEGLGLNVNKFSGLIPSSLGNLTILTRLWMEENRLEGSIPPSLGNCQKLLVLNLSSNDLNGTIPK 372 (717)
Q Consensus 298 ~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~ 372 (717)
.|..|.++++|++|+|++|++++..|..|..+++|++|+|++|++++..+..+..+++|+.|++++|++++.+|.
T Consensus 339 ~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~ 413 (455)
T 3v47_A 339 DSRMFENLDKLEVLDLSYNHIRALGDQSFLGLPNLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPR 413 (455)
T ss_dssp CGGGGTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCTTT
T ss_pred ChhHhcCcccCCEEECCCCcccccChhhccccccccEEECCCCccccCCHhHhccCCcccEEEccCCCcccCCCc
Confidence 899999999999999999999999999999999999999999999976667789999999999999999999983
No 19
>4b99_A Mitogen-activated protein kinase 7; transferase, inhibitor; HET: R4L; 2.80A {Homo sapiens}
Probab=100.00 E-value=6.3e-46 Score=393.23 Aligned_cols=208 Identities=25% Similarity=0.353 Sum_probs=174.8
Q ss_pred ccccccccccCcccccceEEEEeC-CCchhhhHHhHhhh--hhHHHHHHHHHHHHhcCCCCceeEEEEeecccc-CCCCc
Q 005045 388 TDNFSKENLIGTGSFGSVYKGTLG-DGTIVAIKVLKLQQ--QGALKSFIDECNALKSTRHRNILRVITACSSVD-LEGND 463 (717)
Q Consensus 388 ~~~y~~~~~ig~g~~g~v~~~~~~-~~~~vavK~~~~~~--~~~~~~~~~e~~~l~~l~h~ni~~~~~~~~~~~-~~~~~ 463 (717)
.++|++++.||+|+||.||+|+++ +|+.||||++.... ....+++.+|++++++++||||+++++++.... +.+.+
T Consensus 53 ~~~Y~~~~~lG~G~fG~V~~a~~~~t~~~vAiK~i~~~~~~~~~~~~~~~Ei~il~~l~HpnIv~l~~~~~~~~~~~~~~ 132 (398)
T 4b99_A 53 GDEYEIIETIGNGAYGVVSSARRRLTGQQVAIKKIPNAFDVVTNAKRTLRELKILKHFKHDNIIAIKDILRPTVPYGEFK 132 (398)
T ss_dssp CSSEEEEEEEEECSSCEEEEEEETTTCCEEEEEEETTTTSSHHHHHHHHHHHHHHHHCCCTTBCCEEEECCCSSCTTTCC
T ss_pred CCCeEEEEEEecccCeEEEEEEECCCCCEEEEEEECccccchHHHHHHHHHHHHHHhcCCCCcceEeeeeecccccccCC
Confidence 468999999999999999999965 89999999986442 334577889999999999999999999865432 34567
Q ss_pred eEEEEEecCCCCChhhhccCCCCCcccccccCHHHHHHHHHHHHHHHHHHHhcCCCCeeecCCCCCCEEeCCCCceEEee
Q 005045 464 FKALVFEFMSNGNLDQWLHPSPAEHYQFKKLSVIQRLNIAIDVASALDYLHHHCDTPIAHCDLKPSNVLLDKDMTAHVGD 543 (717)
Q Consensus 464 ~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~dlkp~NIll~~~~~~kl~D 543 (717)
..|+||||++ |+|.+++... +.+++..++.++.||+.||+|||++ ||+||||||+|||++.+|.+||+|
T Consensus 133 ~~~ivmE~~~-g~L~~~i~~~-------~~l~~~~~~~~~~qil~al~ylH~~---~iiHRDlKP~NIl~~~~~~~Ki~D 201 (398)
T 4b99_A 133 SVYVVLDLME-SDLHQIIHSS-------QPLTLEHVRYFLYQLLRGLKYMHSA---QVIHRDLKPSNLLVNENCELKIGD 201 (398)
T ss_dssp CEEEEEECCS-EEHHHHHTSS-------SCCCHHHHHHHHHHHHHHHHHHHHT---TCBCCCCCGGGEEECTTCCEEECC
T ss_pred EEEEEEeCCC-CCHHHHHHhc-------CCCCHHHHHHHHHHHHHHHHHHHHC---cCcCCCcCccccccCCCCCEEEee
Confidence 8999999995 6899999765 6799999999999999999999998 999999999999999999999999
Q ss_pred eccchhcccccCCCCCCcceeecccccccccCCCccCC--CCCcccchhhHHHHHHHHHhCCCCCCCC
Q 005045 544 FGLAKFLFEISDNPSKNQTVSIGLKGSIGYIPPEHMNG--QVSILGDIYSYGILLLEMFTGKRPTGDM 609 (717)
Q Consensus 544 fg~~~~~~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~--~~~~~sDvwslG~vl~elltg~~p~~~~ 609 (717)
||+|+.+.... ...........||+.|+|||++.+ .++.++||||+||++|||++|+.||.+.
T Consensus 202 FGla~~~~~~~---~~~~~~~~~~~GT~~Y~APEv~~~~~~~~~~~DiWSlG~il~ell~G~~pF~g~ 266 (398)
T 4b99_A 202 FGMARGLCTSP---AEHQYFMTEYVATRWYRAPELMLSLHEYTQAIDLWSVGCIFGEMLARRQLFPGK 266 (398)
T ss_dssp CTTCBCC----------CCCCCSSCCCCTTCCHHHHTTCSCCCTHHHHHHHHHHHHHHHHTSCSSCCS
T ss_pred cceeeecccCc---cccccccccceeChHhcCHHHhcCCCCCCChhheehhHHHHHHHHHCCCCCCCC
Confidence 99998652211 111222345689999999999665 3689999999999999999999999764
No 20
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=100.00 E-value=1.1e-43 Score=403.93 Aligned_cols=364 Identities=21% Similarity=0.188 Sum_probs=278.0
Q ss_pred cceeeCCcc--eecEEEcCCCcCcCCCCcCCcCCCCCCEEECCCCcccccCCcCCCCCCCCCEEEccCccccccCCcccc
Q 005045 2 ELIMIPEHL--MTQDLNLTYNYLSGKIPTNLSHCTELRSFEASVNDFVGQIPNQLSSLTKLEIIGLGGSNLTGNVPAWIG 79 (717)
Q Consensus 2 ~l~~~p~~~--~~~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~ 79 (717)
+++.+|..+ .+++|+|++|++++..|..|+++++|++|+|++|.+++..|..|.++++|++|+|++|.+++..|..|+
T Consensus 23 ~l~~iP~~l~~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~ 102 (606)
T 3t6q_A 23 GLNEIPGTLPNSTECLEFSFNVLPTIQNTTFSRLINLTFLDLTRCQIYWIHEDTFQSQHRLDTLVLTANPLIFMAETALS 102 (606)
T ss_dssp CCSSCCTTSCTTCCEEECTTCCCSEECTTTSTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCSEECTTTTS
T ss_pred CcccCcCCCCCcCcEEEccCCccCcCChhHhccCccceEEECCCCccceeChhhccCccccCeeeCCCCcccccChhhhc
Confidence 467788766 889999999999988899999999999999999999988899999999999999999999988899999
Q ss_pred CCCCCCEEeccCCcCcccCChhhhccCCCCeEeccCCCCCCCCCccccCCCCccEEEcccCcccccCCcccccCCCCcc-
Q 005045 80 NFSSLKALSLAWNNLRGSIPNELGQLSGLGFFTLYGNFISGIIPSSIYNISSIYYFSVTQNQLHGQLPTDVGLTLPNLK- 158 (717)
Q Consensus 80 ~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~~l~~~~~~~l~~L~- 158 (717)
++++|++|+|++|++++..+..|.++++|++|+|++|.++++....+.++++|++|++++|.++ .++...+..+++|+
T Consensus 103 ~l~~L~~L~L~~n~i~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~-~~~~~~~~~l~~L~~ 181 (606)
T 3t6q_A 103 GPKALKHLFFIQTGISSIDFIPLHNQKTLESLYLGSNHISSIKLPKGFPTEKLKVLDFQNNAIH-YLSKEDMSSLQQATN 181 (606)
T ss_dssp SCTTCCEEECTTSCCSCGGGSCCTTCTTCCEEECCSSCCCCCCCCTTCCCTTCCEEECCSSCCC-EECHHHHHTTTTCCS
T ss_pred ccccccEeeccccCcccCCcchhccCCcccEEECCCCcccccCcccccCCcccCEEEcccCccc-ccChhhhhhhcccce
Confidence 9999999999999999777888999999999999999999876667777999999999999998 66666666888888
Q ss_pred -eeecccccccccCCccCCCC---------------------------------------------------CCCCEEec
Q 005045 159 -IFAGAVNYFTGSIPVSLSNA---------------------------------------------------SNLQVLDF 186 (717)
Q Consensus 159 -~L~l~~n~l~~~~~~~~~~l---------------------------------------------------~~L~~L~l 186 (717)
.|++++|.+.+..|..+... .+|+.|++
T Consensus 182 l~L~l~~n~l~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~l~~l~~~~~~~~~~~~i~~~~~~~l~~~~L~~L~l 261 (606)
T 3t6q_A 182 LSLNLNGNDIAGIEPGAFDSAVFQSLNFGGTQNLLVIFKGLKNSTIQSLWLGTFEDMDDEDISPAVFEGLCEMSVESINL 261 (606)
T ss_dssp EEEECTTCCCCEECTTTTTTCEEEEEECTTCSCHHHHHHHTTTCEEEEEECCCCTTSCCCCCCGGGGGGGGGSEEEEEEC
T ss_pred eEEecCCCccCccChhHhhhccccccccCCchhHHHHhhhccccchhheechhhccccccccChhHhchhhcCceeEEEe
Confidence 78888888887666554321 05666667
Q ss_pred cCccccccCCCCccCCCCCCeeeccccccCCcccCchhhhhhhccCCCCCEEEeecCcccCcCchhhhhccccccEEecC
Q 005045 187 AENGLTGTIPGNFGSLKDLVRLNFDQNELGSREIGDLNFLKFLANCTSLEVLGLARNSFGGEMPISIANLSTHLRRLTMG 266 (717)
Q Consensus 187 ~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~~~~L~~L~l~ 266 (717)
++|.+++..+..|..+++|+.|++++|.++.++ ..+.++++|++|++++|.+++..|..+..+ ++|++|+++
T Consensus 262 ~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~lp-------~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l-~~L~~L~l~ 333 (606)
T 3t6q_A 262 QKHYFFNISSNTFHCFSGLQELDLTATHLSELP-------SGLVGLSTLKKLVLSANKFENLCQISASNF-PSLTHLSIK 333 (606)
T ss_dssp TTCCCSSCCTTTTTTCTTCSEEECTTSCCSCCC-------SSCCSCTTCCEEECTTCCCSBGGGGCGGGC-TTCSEEECC
T ss_pred ecCccCccCHHHhccccCCCEEeccCCccCCCC-------hhhcccccCCEEECccCCcCcCchhhhhcc-CcCCEEECC
Confidence 777777666666777777777777777776553 346666777777777777775555566555 467777777
Q ss_pred CCccCCCCCc-cccCCCCCCEEEccCCcCcccc--chhhhcCCCCCeEEcccCcCCCCCCcccccccccceeeccccccc
Q 005045 267 ENLMHGNIPV-GIGNLVNLNLLGLEGNNLSGSV--PEVIGRLNKLEGLGLNVNKFSGLIPSSLGNLTILTRLWMEENRLE 343 (717)
Q Consensus 267 ~N~l~~~~~~-~~~~l~~L~~L~L~~N~l~~~~--~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~ 343 (717)
+|.+.+.++. .+.++++|++|++++|++++.. +..+..+++|++|++++|++++..|..|..+++|+.|+|++|+++
T Consensus 334 ~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~ 413 (606)
T 3t6q_A 334 GNTKRLELGTGCLENLENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFTRLK 413 (606)
T ss_dssp SCSSCCBCCSSTTTTCTTCCEEECCSSCCCEEEESTTTTTTCTTCCEEECCSCSCEEECTTTTTTCTTCSEEECTTCCEE
T ss_pred CCCcccccchhhhhccCcCCEEECCCCccccccCcchhcccCCCCCEEECCCCcCCcCCHHHhcCCccCCeEECCCCcCC
Confidence 7766644433 3666777777777777776544 556666777777777777776666666777777777777777776
Q ss_pred ccCCcC-ccCcCCCceEEeecccCCCCCCccc
Q 005045 344 GSIPPS-LGNCQKLLVLNLSSNDLNGTIPKEV 374 (717)
Q Consensus 344 ~~~p~~-~~~l~~L~~L~l~~N~l~~~~p~~~ 374 (717)
+..|.. +..+++|+.|++++|.+++..|..+
T Consensus 414 ~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~ 445 (606)
T 3t6q_A 414 VKDAQSPFQNLHLLKVLNLSHSLLDISSEQLF 445 (606)
T ss_dssp CCTTCCTTTTCTTCCEEECTTCCCBTTCTTTT
T ss_pred CcccchhhhCcccCCEEECCCCccCCcCHHHH
Confidence 554433 6667777777777777765555443
No 21
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=100.00 E-value=6.2e-44 Score=405.95 Aligned_cols=363 Identities=18% Similarity=0.162 Sum_probs=257.2
Q ss_pred cceeeCCcc--eecEEEcCCCcCcCCCCcCCcCCCCCCEEECCCCcccccCCcCCCCCCCCCEEEccCccccccCCcccc
Q 005045 2 ELIMIPEHL--MTQDLNLTYNYLSGKIPTNLSHCTELRSFEASVNDFVGQIPNQLSSLTKLEIIGLGGSNLTGNVPAWIG 79 (717)
Q Consensus 2 ~l~~~p~~~--~~~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~ 79 (717)
.++.+|..+ .+++|+|++|++++..+..|.++++|++|+|++|.+++..|..|.++++|++|+|++|.+++..|..|+
T Consensus 22 ~l~~ip~~~~~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~i~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~ 101 (606)
T 3vq2_A 22 KLSKVPDDIPSSTKNIDLSFNPLKILKSYSFSNFSELQWLDLSRCEIETIEDKAWHGLHHLSNLILTGNPIQSFSPGSFS 101 (606)
T ss_dssp CCSSCCTTSCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCCCCTTSST
T ss_pred CcccCCCCCCCCcCEEECCCCCcCEeChhhccCCccCcEEeCCCCcccccCHHHhhchhhcCEeECCCCcccccChhhcC
Confidence 467778766 789999999999988888899999999999999999988888899999999999999999977788999
Q ss_pred CCCCCCEEeccCCcCcccCChhhhccCCCCeEeccCCCCCC-CCCccccCCCCccEEEcccCcccccCCccc--------
Q 005045 80 NFSSLKALSLAWNNLRGSIPNELGQLSGLGFFTLYGNFISG-IIPSSIYNISSIYYFSVTQNQLHGQLPTDV-------- 150 (717)
Q Consensus 80 ~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~i~~-~~~~~~~~l~~L~~L~L~~N~l~~~l~~~~-------- 150 (717)
++++|++|+|++|++++..+..|+++++|++|+|++|.+++ .+|..|.++++|++|+|++|++++..+..+
T Consensus 102 ~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~ 181 (606)
T 3vq2_A 102 GLTSLENLVAVETKLASLESFPIGQLITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNYIQTITVNDLQFLRENPQ 181 (606)
T ss_dssp TCTTCCEEECTTSCCCCSSSSCCTTCTTCCEEECCSSCCCCCCCCGGGGTCTTCCEEECCSSCCCEECTTTTHHHHHCTT
T ss_pred CcccCCEEEccCCccccccccccCCCCCCCEEeCCCCcccceechHhHhhcCCCCEEEccCCcceecChhhhhhhhcccc
Confidence 99999999999999987777889999999999999999886 458889999999999999888873322211
Q ss_pred -------------------c------------------------------------------------------------
Q 005045 151 -------------------G------------------------------------------------------------ 151 (717)
Q Consensus 151 -------------------~------------------------------------------------------------ 151 (717)
+
T Consensus 182 ~l~~L~l~~n~l~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~l~~~~~~~~~~l~~l 261 (606)
T 3vq2_A 182 VNLSLDMSLNPIDFIQDQAFQGIKLHELTLRGNFNSSNIMKTCLQNLAGLHVHRLILGEFKDERNLEIFEPSIMEGLCDV 261 (606)
T ss_dssp CCCEEECTTCCCCEECTTTTTTCEEEEEEEESCCSCHHHHHHHHHTTTTCEEEEEEEECCTTSCCCSCCCGGGGTTGGGS
T ss_pred ccceeeccCCCcceeCcccccCceeeeeeccCCccchhHHHHHhccccccccccccccccccCCcccccChHHhhhhhhc
Confidence 0
Q ss_pred ------------------------------------------cCCCCcceeecccccccccCC-----------------
Q 005045 152 ------------------------------------------LTLPNLKIFAGAVNYFTGSIP----------------- 172 (717)
Q Consensus 152 ------------------------------------------~~l~~L~~L~l~~n~l~~~~~----------------- 172 (717)
..+++|+.|++++|.+. .+|
T Consensus 262 ~l~~l~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~l~~l~~~~~L~~L~l~~n~l~-~lp~~~l~~L~~L~l~~n~~ 340 (606)
T 3vq2_A 262 TIDEFRLTYTNDFSDDIVKFHCLANVSAMSLAGVSIKYLEDVPKHFKWQSLSIIRCQLK-QFPTLDLPFLKSLTLTMNKG 340 (606)
T ss_dssp EEEEEEECCCTTCCGGGGSCGGGTTCSEEEEESCCCCCCCCCCTTCCCSEEEEESCCCS-SCCCCCCSSCCEEEEESCSS
T ss_pred cHhheeccccccccccccccccCCCCCEEEecCccchhhhhccccccCCEEEcccccCc-ccccCCCCccceeeccCCcC
Confidence 01112222333333221 111
Q ss_pred ---ccCCCCCCCCEEeccCccccccC--CCCccCCCCCCeeeccccccCCcccCchhhhhhhccCCCCCEEEeecCcccC
Q 005045 173 ---VSLSNASNLQVLDFAENGLTGTI--PGNFGSLKDLVRLNFDQNELGSREIGDLNFLKFLANCTSLEVLGLARNSFGG 247 (717)
Q Consensus 173 ---~~~~~l~~L~~L~l~~N~l~~~~--~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~ 247 (717)
..+..+++|++|++++|.+++.. +..+..+++|+.|++++|.++.++ ..+..+++|+.|++++|.+.+
T Consensus 341 ~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~-------~~~~~l~~L~~L~l~~n~l~~ 413 (606)
T 3vq2_A 341 SISFKKVALPSLSYLDLSRNALSFSGCCSYSDLGTNSLRHLDLSFNGAIIMS-------ANFMGLEELQHLDFQHSTLKR 413 (606)
T ss_dssp CEECCCCCCTTCCEEECCSSCEEEEEECCHHHHCCSCCCEEECCSCSEEEEC-------CCCTTCTTCCEEECTTSEEES
T ss_pred ccchhhccCCCCCEEECcCCccCCCcchhhhhccCCcccEeECCCCccccch-------hhccCCCCCCeeECCCCccCC
Confidence 12345667777777777777542 566677777777777777766643 345666667777777777665
Q ss_pred cCc-hhhhhccccccEEecCCCccCCCCCccccCCCCCCEEEccCCcCcc-ccchhhhcCCCCCeEEcccCcCCCCCCcc
Q 005045 248 EMP-ISIANLSTHLRRLTMGENLMHGNIPVGIGNLVNLNLLGLEGNNLSG-SVPEVIGRLNKLEGLGLNVNKFSGLIPSS 325 (717)
Q Consensus 248 ~~p-~~~~~~~~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~-~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~ 325 (717)
..| ..+..+ ++|++|++++|.+.+..|..|.++++|++|++++|++++ ..|..+..+++|++|+|++|++++..|..
T Consensus 414 ~~~~~~~~~l-~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~ 492 (606)
T 3vq2_A 414 VTEFSAFLSL-EKLLYLDISYTNTKIDFDGIFLGLTSLNTLKMAGNSFKDNTLSNVFANTTNLTFLDLSKCQLEQISWGV 492 (606)
T ss_dssp TTTTTTTTTC-TTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTT
T ss_pred ccChhhhhcc-ccCCEEECcCCCCCccchhhhcCCCCCCEEECCCCcCCCcchHHhhccCCCCCEEECCCCcCCccChhh
Confidence 555 344444 466777777776666666666666667777776666665 35666666666666677666666666666
Q ss_pred cccccccceeecccccccccCCcCccCcCCCceEEeecccCCCCCCccc
Q 005045 326 LGNLTILTRLWMEENRLEGSIPPSLGNCQKLLVLNLSSNDLNGTIPKEV 374 (717)
Q Consensus 326 ~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~ 374 (717)
|.++++|+.|+|++|++++..|..+..+++|+.|++++|+++ .+|..+
T Consensus 493 ~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~l~-~~p~~~ 540 (606)
T 3vq2_A 493 FDTLHRLQLLNMSHNNLLFLDSSHYNQLYSLSTLDCSFNRIE-TSKGIL 540 (606)
T ss_dssp TTTCTTCCEEECCSSCCSCEEGGGTTTCTTCCEEECTTSCCC-CEESCG
T ss_pred hcccccCCEEECCCCcCCCcCHHHccCCCcCCEEECCCCcCc-ccCHhH
Confidence 666666666666666666666666666666666666666666 455543
No 22
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=100.00 E-value=5e-44 Score=406.57 Aligned_cols=340 Identities=17% Similarity=0.272 Sum_probs=203.9
Q ss_pred eecEEEcCCCcCcCC-----------------CCcCCc--CCCCCCEEECCCCcccccCCcCCCCCCCCCEEEccCcc-c
Q 005045 11 MTQDLNLTYNYLSGK-----------------IPTNLS--HCTELRSFEASVNDFVGQIPNQLSSLTKLEIIGLGGSN-L 70 (717)
Q Consensus 11 ~~~~L~L~~n~l~~~-----------------~~~~~~--~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~-l 70 (717)
++++|+|++|.+++. +|..++ ++++|++|+|++|.+.+.+|..|+++++|++|+|++|+ +
T Consensus 207 ~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~ip~~l~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~~l 286 (636)
T 4eco_A 207 KLRQFYMGNSPFVAENICEAWENENSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNLTKLPTFLKALPEMQLINVACNRGI 286 (636)
T ss_dssp TCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEECCTTCSSCCTTTTTCSSCCEEECTTCTTS
T ss_pred CCCEEECcCCccccccccccccccccchhcccCchhhhhcccCCCCEEEecCCcCCccChHHHhcCCCCCEEECcCCCCC
Confidence 556666666666653 566666 66666666666666666666666666666666666665 5
Q ss_pred cc-cCCccccCC------CCCCEEeccCCcCcccCCh--hhhccCCCCeEeccCCCCCCCCCccccCCCCccEEEcccCc
Q 005045 71 TG-NVPAWIGNF------SSLKALSLAWNNLRGSIPN--ELGQLSGLGFFTLYGNFISGIIPSSIYNISSIYYFSVTQNQ 141 (717)
Q Consensus 71 ~~-~~p~~~~~l------~~L~~L~L~~n~l~~~~~~--~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~ 141 (717)
++ .+|..++.+ ++|++|+|++|+++ .+|. .|.++++|++|+|++|.+++.+| .|..+++|++|+|++|+
T Consensus 287 ~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~l~-~ip~~~~l~~l~~L~~L~L~~N~l~g~ip-~~~~l~~L~~L~L~~N~ 364 (636)
T 4eco_A 287 SGEQLKDDWQALADAPVGEKIQIIYIGYNNLK-TFPVETSLQKMKKLGMLECLYNQLEGKLP-AFGSEIKLASLNLAYNQ 364 (636)
T ss_dssp CHHHHHHHHHHHHHSGGGGTCCEEECCSSCCS-SCCCHHHHTTCTTCCEEECCSCCCEEECC-CCEEEEEESEEECCSSE
T ss_pred ccccchHHHHhhhccccCCCCCEEECCCCcCC-ccCchhhhccCCCCCEEeCcCCcCccchh-hhCCCCCCCEEECCCCc
Confidence 55 555555554 56666666666666 5555 56666666666666666665555 56666666666666666
Q ss_pred ccccCCcccccCCCC-cceeecccccccccCCccCCCCC--CCCEEeccCccccccCCCCcc-------CCCCCCeeecc
Q 005045 142 LHGQLPTDVGLTLPN-LKIFAGAVNYFTGSIPVSLSNAS--NLQVLDFAENGLTGTIPGNFG-------SLKDLVRLNFD 211 (717)
Q Consensus 142 l~~~l~~~~~~~l~~-L~~L~l~~n~l~~~~~~~~~~l~--~L~~L~l~~N~l~~~~~~~~~-------~l~~L~~L~l~ 211 (717)
++ .+|..+. .+++ |+.|++++|.++ .+|..+..++ +|++|++++|.+++..|..|. .+++|+.|+++
T Consensus 365 l~-~lp~~l~-~l~~~L~~L~Ls~N~l~-~lp~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~~~~~~~~~~~L~~L~Ls 441 (636)
T 4eco_A 365 IT-EIPANFC-GFTEQVENLSFAHNKLK-YIPNIFDAKSVSVMSAIDFSYNEIGSVDGKNFDPLDPTPFKGINVSSINLS 441 (636)
T ss_dssp EE-ECCTTSE-EECTTCCEEECCSSCCS-SCCSCCCTTCSSCEEEEECCSSCTTTTTTCSSCTTCSSCCCCCCEEEEECC
T ss_pred cc-cccHhhh-hhcccCcEEEccCCcCc-ccchhhhhcccCccCEEECcCCcCCCcchhhhcccccccccCCCCCEEECc
Confidence 65 5555533 4555 666666666666 4555555433 566666666666655565555 55566666666
Q ss_pred ccccCCcccCchhhhhhhccCCCCCEEEeecCcccCcCchhhhhccc-------cccEEecCCCccCCCCCcccc--CCC
Q 005045 212 QNELGSREIGDLNFLKFLANCTSLEVLGLARNSFGGEMPISIANLST-------HLRRLTMGENLMHGNIPVGIG--NLV 282 (717)
Q Consensus 212 ~N~l~~~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~~~-------~L~~L~l~~N~l~~~~~~~~~--~l~ 282 (717)
+|.++.++ ...+..+++|++|+|++|.++ .+|..++.... +|++|++++|.++ .+|..+. .++
T Consensus 442 ~N~l~~lp------~~~~~~l~~L~~L~Ls~N~l~-~i~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~~~l~ 513 (636)
T 4eco_A 442 NNQISKFP------KELFSTGSPLSSINLMGNMLT-EIPKNSLKDENENFKNTYLLTSIDLRFNKLT-KLSDDFRATTLP 513 (636)
T ss_dssp SSCCCSCC------THHHHTTCCCSEEECCSSCCS-BCCSSSSEETTEECTTGGGCCEEECCSSCCC-BCCGGGSTTTCT
T ss_pred CCccCcCC------HHHHccCCCCCEEECCCCCCC-CcCHHHhccccccccccCCccEEECcCCcCC-ccChhhhhccCC
Confidence 66666554 344455666666666666666 55554443322 5666666666666 4555554 666
Q ss_pred CCCEEEccCCcCccccchhhhcCCCCCeEEc------ccCcCCCCCCcccccccccceeecccccccccCCcCccCcCCC
Q 005045 283 NLNLLGLEGNNLSGSVPEVIGRLNKLEGLGL------NVNKFSGLIPSSLGNLTILTRLWMEENRLEGSIPPSLGNCQKL 356 (717)
Q Consensus 283 ~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L------s~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L 356 (717)
+|+.|+|++|++++ +|..+..+++|+.|+| ++|++.+.+|..+..+++|+.|+|++|+++ .+|..+. ++|
T Consensus 514 ~L~~L~Ls~N~l~~-ip~~~~~l~~L~~L~Ls~N~~ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~-~ip~~~~--~~L 589 (636)
T 4eco_A 514 YLVGIDLSYNSFSK-FPTQPLNSSTLKGFGIRNQRDAQGNRTLREWPEGITLCPSLTQLQIGSNDIR-KVNEKIT--PNI 589 (636)
T ss_dssp TCCEEECCSSCCSS-CCCGGGGCSSCCEEECCSCBCTTCCBCCCCCCTTGGGCSSCCEEECCSSCCC-BCCSCCC--TTC
T ss_pred CcCEEECCCCCCCC-cChhhhcCCCCCEEECCCCcccccCcccccChHHHhcCCCCCEEECCCCcCC-ccCHhHh--CcC
Confidence 66666666666664 5555666666666666 345555566666666666666666666663 5555544 566
Q ss_pred ceEEeecccCC
Q 005045 357 LVLNLSSNDLN 367 (717)
Q Consensus 357 ~~L~l~~N~l~ 367 (717)
+.|++++|++.
T Consensus 590 ~~L~Ls~N~l~ 600 (636)
T 4eco_A 590 SVLDIKDNPNI 600 (636)
T ss_dssp CEEECCSCTTC
T ss_pred CEEECcCCCCc
Confidence 66666666554
No 23
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=100.00 E-value=6.5e-44 Score=405.67 Aligned_cols=339 Identities=21% Similarity=0.321 Sum_probs=305.8
Q ss_pred cCcCCCCcCCcCCCCCCEEECCCCccccc-----------------CCcCCC--CCCCCCEEEccCccccccCCccccCC
Q 005045 21 YLSGKIPTNLSHCTELRSFEASVNDFVGQ-----------------IPNQLS--SLTKLEIIGLGGSNLTGNVPAWIGNF 81 (717)
Q Consensus 21 ~l~~~~~~~~~~l~~L~~L~L~~n~l~~~-----------------~p~~~~--~l~~L~~L~L~~n~l~~~~p~~~~~l 81 (717)
++++ +|..|+++++|++|+|++|.+++. +|..++ ++++|++|+|++|.+.+.+|..|+++
T Consensus 194 ~l~~-ip~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~ip~~l~~~~l~~L~~L~L~~n~l~~~~p~~l~~l 272 (636)
T 4eco_A 194 NITF-VSKAVMRLTKLRQFYMGNSPFVAENICEAWENENSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNLTKLPTFLKAL 272 (636)
T ss_dssp EEEE-ECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEECCTTCSSCCTTTTTC
T ss_pred CCcc-CCHHHhcccCCCEEECcCCccccccccccccccccchhcccCchhhhhcccCCCCEEEecCCcCCccChHHHhcC
Confidence 4555 888999999999999999999985 999999 99999999999999999999999999
Q ss_pred CCCCEEeccCCc-Ccc-cCChhhhcc------CCCCeEeccCCCCCCCCCc--cccCCCCccEEEcccCcccccCCcccc
Q 005045 82 SSLKALSLAWNN-LRG-SIPNELGQL------SGLGFFTLYGNFISGIIPS--SIYNISSIYYFSVTQNQLHGQLPTDVG 151 (717)
Q Consensus 82 ~~L~~L~L~~n~-l~~-~~~~~~~~l------~~L~~L~L~~N~i~~~~~~--~~~~l~~L~~L~L~~N~l~~~l~~~~~ 151 (717)
++|++|+|++|+ +++ .+|..++.+ ++|++|+|++|+++ .+|. .|.++++|++|+|++|.++|.+| .+
T Consensus 273 ~~L~~L~Ls~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~l~-~ip~~~~l~~l~~L~~L~L~~N~l~g~ip--~~ 349 (636)
T 4eco_A 273 PEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLK-TFPVETSLQKMKKLGMLECLYNQLEGKLP--AF 349 (636)
T ss_dssp SSCCEEECTTCTTSCHHHHHHHHHHHHHSGGGGTCCEEECCSSCCS-SCCCHHHHTTCTTCCEEECCSCCCEEECC--CC
T ss_pred CCCCEEECcCCCCCccccchHHHHhhhccccCCCCCEEECCCCcCC-ccCchhhhccCCCCCEEeCcCCcCccchh--hh
Confidence 999999999999 998 799999887 99999999999999 7887 99999999999999999998999 55
Q ss_pred cCCCCcceeecccccccccCCccCCCCCC-CCEEeccCccccccCCCCccCCC--CCCeeeccccccCCcccCchhhhhh
Q 005045 152 LTLPNLKIFAGAVNYFTGSIPVSLSNASN-LQVLDFAENGLTGTIPGNFGSLK--DLVRLNFDQNELGSREIGDLNFLKF 228 (717)
Q Consensus 152 ~~l~~L~~L~l~~n~l~~~~~~~~~~l~~-L~~L~l~~N~l~~~~~~~~~~l~--~L~~L~l~~N~l~~~~~~~~~~~~~ 228 (717)
..+++|+.|++++|.++ .+|..+..+++ |++|++++|.++ .+|..+..++ +|+.|++++|.++... |..
T Consensus 350 ~~l~~L~~L~L~~N~l~-~lp~~l~~l~~~L~~L~Ls~N~l~-~lp~~~~~~~l~~L~~L~Ls~N~l~~~~------p~~ 421 (636)
T 4eco_A 350 GSEIKLASLNLAYNQIT-EIPANFCGFTEQVENLSFAHNKLK-YIPNIFDAKSVSVMSAIDFSYNEIGSVD------GKN 421 (636)
T ss_dssp EEEEEESEEECCSSEEE-ECCTTSEEECTTCCEEECCSSCCS-SCCSCCCTTCSSCEEEEECCSSCTTTTT------TCS
T ss_pred CCCCCCCEEECCCCccc-cccHhhhhhcccCcEEEccCCcCc-ccchhhhhcccCccCEEECcCCcCCCcc------hhh
Confidence 68999999999999999 78888999999 999999999999 7888887755 9999999999998866 455
Q ss_pred hc-------cCCCCCEEEeecCcccCcCchhhhhccccccEEecCCCccCCCCCccccCCC-------CCCEEEccCCcC
Q 005045 229 LA-------NCTSLEVLGLARNSFGGEMPISIANLSTHLRRLTMGENLMHGNIPVGIGNLV-------NLNLLGLEGNNL 294 (717)
Q Consensus 229 ~~-------~l~~L~~L~L~~N~l~~~~p~~~~~~~~~L~~L~l~~N~l~~~~~~~~~~l~-------~L~~L~L~~N~l 294 (717)
+. .+++|+.|+|++|.++ .+|..++...++|++|++++|.++...+..+.... +|+.|+|++|++
T Consensus 422 l~~~~~~~~~~~~L~~L~Ls~N~l~-~lp~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~~~~~~~~l~~L~~L~Ls~N~l 500 (636)
T 4eco_A 422 FDPLDPTPFKGINVSSINLSNNQIS-KFPKELFSTGSPLSSINLMGNMLTEIPKNSLKDENENFKNTYLLTSIDLRFNKL 500 (636)
T ss_dssp SCTTCSSCCCCCCEEEEECCSSCCC-SCCTHHHHTTCCCSEEECCSSCCSBCCSSSSEETTEECTTGGGCCEEECCSSCC
T ss_pred hcccccccccCCCCCEEECcCCccC-cCCHHHHccCCCCCEEECCCCCCCCcCHHHhccccccccccCCccEEECcCCcC
Confidence 66 7789999999999999 78877766446999999999999944444454443 999999999999
Q ss_pred ccccchhhh--cCCCCCeEEcccCcCCCCCCcccccccccceeec------ccccccccCCcCccCcCCCceEEeecccC
Q 005045 295 SGSVPEVIG--RLNKLEGLGLNVNKFSGLIPSSLGNLTILTRLWM------EENRLEGSIPPSLGNCQKLLVLNLSSNDL 366 (717)
Q Consensus 295 ~~~~~~~~~--~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L------~~N~l~~~~p~~~~~l~~L~~L~l~~N~l 366 (717)
+ .+|..+. .+++|+.|+|++|++++ +|..+..+++|+.|+| ++|++.+.+|..+..+++|+.|+|++|.+
T Consensus 501 ~-~lp~~~~~~~l~~L~~L~Ls~N~l~~-ip~~~~~l~~L~~L~Ls~N~~ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l 578 (636)
T 4eco_A 501 T-KLSDDFRATTLPYLVGIDLSYNSFSK-FPTQPLNSSTLKGFGIRNQRDAQGNRTLREWPEGITLCPSLTQLQIGSNDI 578 (636)
T ss_dssp C-BCCGGGSTTTCTTCCEEECCSSCCSS-CCCGGGGCSSCCEEECCSCBCTTCCBCCCCCCTTGGGCSSCCEEECCSSCC
T ss_pred C-ccChhhhhccCCCcCEEECCCCCCCC-cChhhhcCCCCCEEECCCCcccccCcccccChHHHhcCCCCCEEECCCCcC
Confidence 9 7888887 99999999999999998 7889999999999999 56888889999999999999999999999
Q ss_pred CCCCCcccc
Q 005045 367 NGTIPKEVR 375 (717)
Q Consensus 367 ~~~~p~~~~ 375 (717)
+.+|..+.
T Consensus 579 -~~ip~~~~ 586 (636)
T 4eco_A 579 -RKVNEKIT 586 (636)
T ss_dssp -CBCCSCCC
T ss_pred -CccCHhHh
Confidence 68888754
No 24
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=100.00 E-value=2.8e-43 Score=397.73 Aligned_cols=361 Identities=19% Similarity=0.237 Sum_probs=242.3
Q ss_pred cceeeCCcc--eecEEEcCCCcCcCCCCcCCcCCCCCCEEECCCCcccccCCcCCCCCCCCCEEEccCccccccCCcccc
Q 005045 2 ELIMIPEHL--MTQDLNLTYNYLSGKIPTNLSHCTELRSFEASVNDFVGQIPNQLSSLTKLEIIGLGGSNLTGNVPAWIG 79 (717)
Q Consensus 2 ~l~~~p~~~--~~~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~ 79 (717)
.++.+|..+ .+++|+|++|++++..+.+|..+++|++|+|++|.+++..|..|.++++|++|+|++|.+++..|..|.
T Consensus 18 ~l~~ip~~l~~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~ 97 (570)
T 2z63_A 18 NFYKIPDNLPFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFS 97 (570)
T ss_dssp CCSSCCSSSCSSCCEEECCSCCCCEECTTTTTTCSSCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTT
T ss_pred CccccCCCccccccEEEccCCccCccChhHhhCCCCceEEECCCCcCCccCcccccCchhCCEEeCcCCcCCccCHhhhc
Confidence 567788755 789999999999988888999999999999999999988888899999999999999999977778899
Q ss_pred CCCCCCEEeccCCcCcccCChhhhccCCCCeEeccCCCCCCC-CCccccCCCCccEEEcccCcccccCCcccccC-----
Q 005045 80 NFSSLKALSLAWNNLRGSIPNELGQLSGLGFFTLYGNFISGI-IPSSIYNISSIYYFSVTQNQLHGQLPTDVGLT----- 153 (717)
Q Consensus 80 ~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~i~~~-~~~~~~~l~~L~~L~L~~N~l~~~l~~~~~~~----- 153 (717)
++++|++|+|++|++++..+..|+++++|++|+|++|.++++ .|..|.++++|++|++++|.++ .++...+..
T Consensus 98 ~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~l~~n~l~-~~~~~~~~~l~~L~ 176 (570)
T 2z63_A 98 GLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQ-SIYCTDLRVLHQMP 176 (570)
T ss_dssp TCTTCCEEECTTSCCCCSTTCSCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECTTSCCC-EECGGGGHHHHTCT
T ss_pred CccccccccccccccccCCCccccccccccEEecCCCccceecChhhhcccCCCCEEeCcCCccc-eecHHHccchhccc
Confidence 999999999999999966666799999999999999999864 5889999999999999999887 333222222
Q ss_pred --------------------------------------------------------------------------------
Q 005045 154 -------------------------------------------------------------------------------- 153 (717)
Q Consensus 154 -------------------------------------------------------------------------------- 153 (717)
T Consensus 177 ~~~~~L~l~~n~l~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~~l~~~~~~~~~~l~~ 256 (570)
T 2z63_A 177 LLNLSLDLSLNPMNFIQPGAFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCN 256 (570)
T ss_dssp TCCCEEECTTCCCCEECTTTTTTCEEEEEEEESCCSCTTHHHHHHHTTTTCEEEEEEEEECCCCSSCEECCTTTTGGGGG
T ss_pred hhhhhcccCCCCceecCHHHhccCcceeEecccccccccchhhhhcCccccceeeeccccccCchhhhhcchhhhccccc
Confidence
Q ss_pred ------------------------CCCcceeecccccccccCCccCCCCCCCCEEeccCccccccCCC-Cc---------
Q 005045 154 ------------------------LPNLKIFAGAVNYFTGSIPVSLSNASNLQVLDFAENGLTGTIPG-NF--------- 199 (717)
Q Consensus 154 ------------------------l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~-~~--------- 199 (717)
+++|+.|++++|.+. .+|..+..+ +|++|++++|.++ .+|. .+
T Consensus 257 l~l~~l~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~-~l~~~~~~~-~L~~L~l~~n~~~-~l~~~~l~~L~~L~l~ 333 (570)
T 2z63_A 257 LTIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIE-RVKDFSYNF-GWQHLELVNCKFG-QFPTLKLKSLKRLTFT 333 (570)
T ss_dssp SEEEEEEEEETTEEESCSTTTTGGGTTCSEEEEESCEEC-SCCBCCSCC-CCSEEEEESCBCS-SCCBCBCSSCCEEEEE
T ss_pred cchhhhhhhcchhhhhhchhhhcCcCcccEEEecCccch-hhhhhhccC-CccEEeeccCccc-ccCcccccccCEEeCc
Confidence 234444444444444 233333333 3333333333333 1111 00
Q ss_pred ----------cCCCCCCeeeccccccCCcccCchhhhhh-----------------------hccCCCCCEEEeecCccc
Q 005045 200 ----------GSLKDLVRLNFDQNELGSREIGDLNFLKF-----------------------LANCTSLEVLGLARNSFG 246 (717)
Q Consensus 200 ----------~~l~~L~~L~l~~N~l~~~~~~~~~~~~~-----------------------~~~l~~L~~L~L~~N~l~ 246 (717)
..+++|+.|++++|.++..... +.. +..+++|+.|++++|.++
T Consensus 334 ~n~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~----~~~~~~~~~L~~L~l~~n~l~~~~~~~~~l~~L~~L~l~~n~l~ 409 (570)
T 2z63_A 334 SNKGGNAFSEVDLPSLEFLDLSRNGLSFKGCC----SQSDFGTTSLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLK 409 (570)
T ss_dssp SCBSCCBCCCCBCTTCCEEECCSSCCBEEEEE----EHHHHTCSCCCEEECCSCSEEEEEEEEETCTTCCEEECTTSEEE
T ss_pred CCccccccccccCCCCCEEeCcCCccCccccc----cccccccCccCEEECCCCccccccccccccCCCCEEEccCCccc
Confidence 3455666666666666543210 123 444555555555555555
Q ss_pred CcCch-hhhhccccccEEecCCCccCCCCCccccCCCCCCEEEccCCcCc-cccchhhhcCCCCCeEEcccCcCCCCCCc
Q 005045 247 GEMPI-SIANLSTHLRRLTMGENLMHGNIPVGIGNLVNLNLLGLEGNNLS-GSVPEVIGRLNKLEGLGLNVNKFSGLIPS 324 (717)
Q Consensus 247 ~~~p~-~~~~~~~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~-~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~ 324 (717)
+..|. .+..+ ++|++|++++|.+.+..+..|.++++|+.|+|++|+++ +.+|..+..+++|++|+|++|++++..|.
T Consensus 410 ~~~~~~~~~~l-~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~ 488 (570)
T 2z63_A 410 QMSEFSVFLSL-RNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPT 488 (570)
T ss_dssp SCTTSCTTTTC-TTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTT
T ss_pred cccchhhhhcC-CCCCEEeCcCCcccccchhhhhcCCcCcEEECcCCcCccccchhhhhcccCCCEEECCCCccccCChh
Confidence 33332 23333 45666666666665555566666666666666666665 34556666666666666666666666666
Q ss_pred ccccccccceeecccccccccCCcCccCcCCCceEEeecccCCCCCC
Q 005045 325 SLGNLTILTRLWMEENRLEGSIPPSLGNCQKLLVLNLSSNDLNGTIP 371 (717)
Q Consensus 325 ~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p 371 (717)
.|..+++|++|+|++|++++..|..|..+++|+.|++++|++++.+|
T Consensus 489 ~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~ 535 (570)
T 2z63_A 489 AFNSLSSLQVLNMASNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP 535 (570)
T ss_dssp TTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCTT
T ss_pred hhhcccCCCEEeCCCCcCCCCCHHHhhcccCCcEEEecCCcccCCCc
Confidence 66666666666666666665555556666666666666666666655
No 25
>4f9c_A Cell division cycle 7-related protein kinase; Ser/Thr protein kinase, transferase, phosphorylation, cell C cell division, mitosis, S phase; HET: 0SX; 2.08A {Homo sapiens} PDB: 4f99_A* 4f9b_A* 4f9a_A*
Probab=100.00 E-value=6.3e-45 Score=381.64 Aligned_cols=209 Identities=23% Similarity=0.342 Sum_probs=169.3
Q ss_pred cccccccccccccccCcccccceEEEEeC----CCchhhhHHhHhhhhhHHHHHHHHHHHHhcC-CCCceeEEEEeeccc
Q 005045 383 DISKSTDNFSKENLIGTGSFGSVYKGTLG----DGTIVAIKVLKLQQQGALKSFIDECNALKST-RHRNILRVITACSSV 457 (717)
Q Consensus 383 ~~~~~~~~y~~~~~ig~g~~g~v~~~~~~----~~~~vavK~~~~~~~~~~~~~~~e~~~l~~l-~h~ni~~~~~~~~~~ 457 (717)
.+....++|++.++||+|+||.||+|+++ +++.||+|.+.... ...++.+|+++++.+ +||||+++++++
T Consensus 15 ~~p~l~~~Y~i~~~lG~G~fg~Vy~a~~~~~~~~~~~vAiK~i~~~~--~~~~~~~E~~~l~~~~~h~nIv~l~~~~--- 89 (361)
T 4f9c_A 15 AVPQLSNVFKIEDKIGEGTFSSVYLATAQLQVGPEEKIALKHLIPTS--HPIRIAAELQCLTVAGGQDNVMGVKYCF--- 89 (361)
T ss_dssp HSGGGGGTCEEEEEEEECSSEEEEEEEEEBTTSCEEEEEEEEECTTS--CHHHHHHHHHHHHHTCSBTTBCCCSEEE---
T ss_pred hcCCccCcEEEEEEEecccCcEEEEEEEcccCCCCCEEEEEEEcccc--CHHHHHHHHHHHHHhcCCCCCceEEEEE---
Confidence 44556789999999999999999999853 57889999876443 235678899999998 799999999984
Q ss_pred cCCCCceEEEEEecCCCCChhhhccCCCCCcccccccCHHHHHHHHHHHHHHHHHHHhcCCCCeeecCCCCCCEEeCCC-
Q 005045 458 DLEGNDFKALVFEFMSNGNLDQWLHPSPAEHYQFKKLSVIQRLNIAIDVASALDYLHHHCDTPIAHCDLKPSNVLLDKD- 536 (717)
Q Consensus 458 ~~~~~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~dlkp~NIll~~~- 536 (717)
.+.++.|+||||++|++|.+++. .+++.+++.++.||+.||+|||++ ||+||||||+|||++.+
T Consensus 90 --~~~~~~~lvmE~~~g~~L~~~~~----------~l~~~~~~~~~~qll~al~ylH~~---gIiHRDiKPeNiLl~~~~ 154 (361)
T 4f9c_A 90 --RKNDHVVIAMPYLEHESFLDILN----------SLSFQEVREYMLNLFKALKRIHQF---GIVHRDVKPSNFLYNRRL 154 (361)
T ss_dssp --EETTEEEEEEECCCCCCHHHHHT----------TCCHHHHHHHHHHHHHHHHHHHHT---TEECSCCSGGGEEEETTT
T ss_pred --EECCEEEEEEeCCCcccHHHHHc----------CCCHHHHHHHHHHHHHHHHHHHHC---CeEeCcCCHHHeEEeCCC
Confidence 44569999999999999999983 478999999999999999999998 99999999999999876
Q ss_pred CceEEeeeccchhcccccCCC---------------------CCCcceeecccccccccCCCccCC--CCCcccchhhHH
Q 005045 537 MTAHVGDFGLAKFLFEISDNP---------------------SKNQTVSIGLKGSIGYIPPEHMNG--QVSILGDIYSYG 593 (717)
Q Consensus 537 ~~~kl~Dfg~~~~~~~~~~~~---------------------~~~~~~~~~~~~~~~y~aPE~~~~--~~~~~sDvwslG 593 (717)
+.+||+|||+|+......... ...........||+.|+|||++.+ .++.++||||+|
T Consensus 155 ~~~kl~DFGla~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~GT~~Y~APE~l~~~~~y~~~~DiWSlG 234 (361)
T 4f9c_A 155 KKYALVDFGLAQGTHDTKIELLKFVQSEAQQERCSQNKCSICLSRRQQVAPRAGTPGFRAPEVLTKCPNQTTAIDMWSAG 234 (361)
T ss_dssp TEEEECCCTTCEECTTCSCGGGGGC--------------------------CCCCGGGCCHHHHTTCSCCCTHHHHHHHH
T ss_pred CeEEECcCCCCcccCCccccccccccccccccccccccccccccccccccccccCccccCHHHHcCCCCCCCccchhhhH
Confidence 799999999997542211000 000112234579999999999765 378999999999
Q ss_pred HHHHHHHhCCCCCCCCCC
Q 005045 594 ILLLEMFTGKRPTGDMFK 611 (717)
Q Consensus 594 ~vl~elltg~~p~~~~~~ 611 (717)
|++|||++|+.||.....
T Consensus 235 ~il~ell~G~~Pf~~~~~ 252 (361)
T 4f9c_A 235 VIFLSLLSGRYPFYKASD 252 (361)
T ss_dssp HHHHHHHHTCSSSSCCSS
T ss_pred HHHHHHHHCCCCCCCCCC
Confidence 999999999999976543
No 26
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=100.00 E-value=4.7e-42 Score=390.42 Aligned_cols=350 Identities=19% Similarity=0.158 Sum_probs=304.8
Q ss_pred ceecEEEcCCCcCcCCCCcCCcCCCCCCEEECCCCcccccCCcCCCCCCCCCEEEccCccccccCCccccCCCCCCEEec
Q 005045 10 LMTQDLNLTYNYLSGKIPTNLSHCTELRSFEASVNDFVGQIPNQLSSLTKLEIIGLGGSNLTGNVPAWIGNFSSLKALSL 89 (717)
Q Consensus 10 ~~~~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L 89 (717)
.++++|+|++|++++..|.+|+++++|++|+|++|.+++..|..|+++++|++|+|++|.+++..|..|+++++|++|+|
T Consensus 57 ~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~l~~~~~~~l~~L~~L~L 136 (606)
T 3t6q_A 57 INLTFLDLTRCQIYWIHEDTFQSQHRLDTLVLTANPLIFMAETALSGPKALKHLFFIQTGISSIDFIPLHNQKTLESLYL 136 (606)
T ss_dssp TTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCSEECTTTTSSCTTCCEEECTTSCCSCGGGSCCTTCTTCCEEEC
T ss_pred ccceEEECCCCccceeChhhccCccccCeeeCCCCcccccChhhhcccccccEeeccccCcccCCcchhccCCcccEEEC
Confidence 38999999999999989999999999999999999999888999999999999999999999776888999999999999
Q ss_pred cCCcCcccCChhhhccCCCCeEeccCCCCCCCCCccccCCCCcc--EEEcccCcccccCCcccccC--------------
Q 005045 90 AWNNLRGSIPNELGQLSGLGFFTLYGNFISGIIPSSIYNISSIY--YFSVTQNQLHGQLPTDVGLT-------------- 153 (717)
Q Consensus 90 ~~n~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~--~L~L~~N~l~~~l~~~~~~~-------------- 153 (717)
++|++++.....+..+++|++|+|++|.+++..+..|..+++|+ .|++++|.+++ ++...+..
T Consensus 137 ~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~l~L~l~~n~l~~-~~~~~~~~~~L~~L~l~~~~~~ 215 (606)
T 3t6q_A 137 GSNHISSIKLPKGFPTEKLKVLDFQNNAIHYLSKEDMSSLQQATNLSLNLNGNDIAG-IEPGAFDSAVFQSLNFGGTQNL 215 (606)
T ss_dssp CSSCCCCCCCCTTCCCTTCCEEECCSSCCCEECHHHHHTTTTCCSEEEECTTCCCCE-ECTTTTTTCEEEEEECTTCSCH
T ss_pred CCCcccccCcccccCCcccCEEEcccCcccccChhhhhhhcccceeEEecCCCccCc-cChhHhhhccccccccCCchhH
Confidence 99999975555666699999999999999988899999999999 89999999984 44333321
Q ss_pred -----------------------------------C--CCcceeecccccccccCCccCCCCCCCCEEeccCccccccCC
Q 005045 154 -----------------------------------L--PNLKIFAGAVNYFTGSIPVSLSNASNLQVLDFAENGLTGTIP 196 (717)
Q Consensus 154 -----------------------------------l--~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~ 196 (717)
+ .+|+.|++++|.+.+..+..|..+++|++|++++|.++ .+|
T Consensus 216 ~~~~~~l~~~~l~~l~~~~~~~~~~~~i~~~~~~~l~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~-~lp 294 (606)
T 3t6q_A 216 LVIFKGLKNSTIQSLWLGTFEDMDDEDISPAVFEGLCEMSVESINLQKHYFFNISSNTFHCFSGLQELDLTATHLS-ELP 294 (606)
T ss_dssp HHHHHHTTTCEEEEEECCCCTTSCCCCCCGGGGGGGGGSEEEEEECTTCCCSSCCTTTTTTCTTCSEEECTTSCCS-CCC
T ss_pred HHHhhhccccchhheechhhccccccccChhHhchhhcCceeEEEeecCccCccCHHHhccccCCCEEeccCCccC-CCC
Confidence 1 16788889999999888888999999999999999999 788
Q ss_pred CCccCCCCCCeeeccccccCCcccCchhhhhhhccCCCCCEEEeecCcccCcCchh-hhhccccccEEecCCCccCCCC-
Q 005045 197 GNFGSLKDLVRLNFDQNELGSREIGDLNFLKFLANCTSLEVLGLARNSFGGEMPIS-IANLSTHLRRLTMGENLMHGNI- 274 (717)
Q Consensus 197 ~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~-~~~~~~~L~~L~l~~N~l~~~~- 274 (717)
..+..+++|++|++++|.++.+. +..+.++++|+.|++++|.+.+.+|.. +..+ ++|++|++++|.+.+..
T Consensus 295 ~~l~~l~~L~~L~l~~n~l~~~~------~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l-~~L~~L~l~~n~l~~~~~ 367 (606)
T 3t6q_A 295 SGLVGLSTLKKLVLSANKFENLC------QISASNFPSLTHLSIKGNTKRLELGTGCLENL-ENLRELDLSHDDIETSDC 367 (606)
T ss_dssp SSCCSCTTCCEEECTTCCCSBGG------GGCGGGCTTCSEEECCSCSSCCBCCSSTTTTC-TTCCEEECCSSCCCEEEE
T ss_pred hhhcccccCCEEECccCCcCcCc------hhhhhccCcCCEEECCCCCcccccchhhhhcc-CcCCEEECCCCccccccC
Confidence 88999999999999999998876 667888899999999999988777665 4555 68999999999988665
Q ss_pred -CccccCCCCCCEEEccCCcCccccchhhhcCCCCCeEEcccCcCCCCCCc-ccccccccceeecccccccccCCcCccC
Q 005045 275 -PVGIGNLVNLNLLGLEGNNLSGSVPEVIGRLNKLEGLGLNVNKFSGLIPS-SLGNLTILTRLWMEENRLEGSIPPSLGN 352 (717)
Q Consensus 275 -~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~-~~~~l~~L~~L~L~~N~l~~~~p~~~~~ 352 (717)
+..+.++++|+.|++++|++.+..|..|..+++|++|++++|++++..+. .|..+++|+.|+|++|.+++..|..+..
T Consensus 368 ~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~ 447 (606)
T 3t6q_A 368 CNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFTRLKVKDAQSPFQNLHLLKVLNLSHSLLDISSEQLFDG 447 (606)
T ss_dssp STTTTTTCTTCCEEECCSCSCEEECTTTTTTCTTCSEEECTTCCEECCTTCCTTTTCTTCCEEECTTCCCBTTCTTTTTT
T ss_pred cchhcccCCCCCEEECCCCcCCcCCHHHhcCCccCCeEECCCCcCCCcccchhhhCcccCCEEECCCCccCCcCHHHHhC
Confidence 67788899999999999999888888888899999999999998877654 4888899999999999998888888888
Q ss_pred cCCCceEEeecccCCC
Q 005045 353 CQKLLVLNLSSNDLNG 368 (717)
Q Consensus 353 l~~L~~L~l~~N~l~~ 368 (717)
+++|++|++++|++++
T Consensus 448 l~~L~~L~L~~n~l~~ 463 (606)
T 3t6q_A 448 LPALQHLNLQGNHFPK 463 (606)
T ss_dssp CTTCCEEECTTCBCGG
T ss_pred CCCCCEEECCCCCCCc
Confidence 9999999999998876
No 27
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=100.00 E-value=2.2e-42 Score=399.08 Aligned_cols=340 Identities=20% Similarity=0.303 Sum_probs=185.8
Q ss_pred CcCcCCCCcCCcCCCCCCEEECCCCcccc-----------------cCCcCCC--CCCCCCEEEccCccccccCCccccC
Q 005045 20 NYLSGKIPTNLSHCTELRSFEASVNDFVG-----------------QIPNQLS--SLTKLEIIGLGGSNLTGNVPAWIGN 80 (717)
Q Consensus 20 n~l~~~~~~~~~~l~~L~~L~L~~n~l~~-----------------~~p~~~~--~l~~L~~L~L~~n~l~~~~p~~~~~ 80 (717)
|++++ +|..|+++++|++|+|++|.+++ .+|..++ ++++|++|+|++|.+.+.+|..|++
T Consensus 435 N~L~~-IP~~l~~L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~iP~~l~f~~L~~L~~L~Ls~N~l~~~iP~~l~~ 513 (876)
T 4ecn_A 435 NRITF-ISKAIQRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTDVELYNCPNMTQLPDFLYD 513 (876)
T ss_dssp CEEEE-ECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEESCTTCCSCCGGGGG
T ss_pred Ccccc-hhHHHhcCCCCCEEECcCCcCCCCcccccccccccccccccCChhhhhccCCCCCEEECcCCCCCccChHHHhC
Confidence 55554 55556666666666666666654 2555555 5666666666666655555655666
Q ss_pred CCCCCEEeccCCc-Ccc-cCChhhhccC-------CCCeEeccCCCCCCCCCc--cccCCCCccEEEcccCcccccCCcc
Q 005045 81 FSSLKALSLAWNN-LRG-SIPNELGQLS-------GLGFFTLYGNFISGIIPS--SIYNISSIYYFSVTQNQLHGQLPTD 149 (717)
Q Consensus 81 l~~L~~L~L~~n~-l~~-~~~~~~~~l~-------~L~~L~L~~N~i~~~~~~--~~~~l~~L~~L~L~~N~l~~~l~~~ 149 (717)
+++|++|+|++|+ +++ .+|..|..++ +|++|+|++|.++ .+|. .|.++++|+.|+|++|+++ .+|
T Consensus 514 L~~L~~L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L~-~ip~~~~l~~L~~L~~L~Ls~N~l~-~lp-- 589 (876)
T 4ecn_A 514 LPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLE-EFPASASLQKMVKLGLLDCVHNKVR-HLE-- 589 (876)
T ss_dssp CSSCCEEECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSCCC-BCCCHHHHTTCTTCCEEECTTSCCC-BCC--
T ss_pred CCCCCEEECcCCCCcccccchHHHHhhhhcccccCCccEEEeeCCcCC-ccCChhhhhcCCCCCEEECCCCCcc-cch--
Confidence 6666666666665 554 4555555444 5666666666665 4454 5666666666666666665 555
Q ss_pred cccCCCCcceeecccccccccCCccCCCCCC-CCEEeccCccccccCCCCccCCCC--CCeeeccccccCCcccCchhhh
Q 005045 150 VGLTLPNLKIFAGAVNYFTGSIPVSLSNASN-LQVLDFAENGLTGTIPGNFGSLKD--LVRLNFDQNELGSREIGDLNFL 226 (717)
Q Consensus 150 ~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~-L~~L~l~~N~l~~~~~~~~~~l~~--L~~L~l~~N~l~~~~~~~~~~~ 226 (717)
.+..+++|+.|++++|.+. .+|..+..+++ |++|+|++|.++ .+|..+..++. |+.|++++|++...... + +
T Consensus 590 ~~~~L~~L~~L~Ls~N~l~-~lp~~l~~l~~~L~~L~Ls~N~L~-~lp~~~~~~~~~~L~~L~Ls~N~l~g~ip~-l--~ 664 (876)
T 4ecn_A 590 AFGTNVKLTDLKLDYNQIE-EIPEDFCAFTDQVEGLGFSHNKLK-YIPNIFNAKSVYVMGSVDFSYNKIGSEGRN-I--S 664 (876)
T ss_dssp CCCTTSEESEEECCSSCCS-CCCTTSCEECTTCCEEECCSSCCC-SCCSCCCTTCSSCEEEEECCSSCTTTTSSS-C--S
T ss_pred hhcCCCcceEEECcCCccc-cchHHHhhccccCCEEECcCCCCC-cCchhhhccccCCCCEEECcCCcCCCcccc-c--h
Confidence 3345556666666666655 45555555555 666666666665 45555544433 56666666655442200 0 0
Q ss_pred hhhc--cCCCCCEEEeecCcccCcCchhhhhccccccEEecCCCccCCCCCcc-ccC-------CCCCCEEEccCCcCcc
Q 005045 227 KFLA--NCTSLEVLGLARNSFGGEMPISIANLSTHLRRLTMGENLMHGNIPVG-IGN-------LVNLNLLGLEGNNLSG 296 (717)
Q Consensus 227 ~~~~--~l~~L~~L~L~~N~l~~~~p~~~~~~~~~L~~L~l~~N~l~~~~~~~-~~~-------l~~L~~L~L~~N~l~~ 296 (717)
..+. .+++|+.|+|++|.++ .+|..++...++|+.|+|++|.+. .+|.. +.. +++|+.|+|++|+|+
T Consensus 665 ~~l~~~~~~~L~~L~Ls~N~L~-~lp~~~~~~l~~L~~L~Ls~N~L~-~ip~~~~~~~~~~l~nl~~L~~L~Ls~N~L~- 741 (876)
T 4ecn_A 665 CSMDDYKGINASTVTLSYNEIQ-KFPTELFATGSPISTIILSNNLMT-SIPENSLKPKDGNYKNTYLLTTIDLRFNKLT- 741 (876)
T ss_dssp SCTTTCCCCCEEEEECCSSCCC-SCCHHHHHTTCCCSEEECCSCCCS-CCCTTSSSCTTSCCTTGGGCCEEECCSSCCC-
T ss_pred hhhccccCCCcCEEEccCCcCC-ccCHHHHccCCCCCEEECCCCcCC-ccChHHhccccccccccCCccEEECCCCCCc-
Confidence 0111 2235556666666665 555554432245666666666555 23322 221 125666666666665
Q ss_pred ccchhhh--cCCCCCeEEcccCcCCCCCCcccccccccceeeccc------ccccccCCcCccCcCCCceEEeecccCCC
Q 005045 297 SVPEVIG--RLNKLEGLGLNVNKFSGLIPSSLGNLTILTRLWMEE------NRLEGSIPPSLGNCQKLLVLNLSSNDLNG 368 (717)
Q Consensus 297 ~~~~~~~--~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~------N~l~~~~p~~~~~l~~L~~L~l~~N~l~~ 368 (717)
.+|..+. .+++|+.|+|++|++++ +|..+..+++|+.|+|++ |++.+.+|..+..+++|+.|+|++|++ +
T Consensus 742 ~lp~~l~~~~l~~L~~L~Ls~N~L~~-lp~~l~~L~~L~~L~Ls~N~~ls~N~l~~~ip~~l~~L~~L~~L~Ls~N~L-~ 819 (876)
T 4ecn_A 742 SLSDDFRATTLPYLSNMDVSYNCFSS-FPTQPLNSSQLKAFGIRHQRDAEGNRILRQWPTGITTCPSLIQLQIGSNDI-R 819 (876)
T ss_dssp CCCGGGSTTTCTTCCEEECCSSCCSS-CCCGGGGCTTCCEEECCCCBCTTCCBCCCCCCTTGGGCSSCCEEECCSSCC-C
T ss_pred cchHHhhhccCCCcCEEEeCCCCCCc-cchhhhcCCCCCEEECCCCCCcccccccccChHHHhcCCCCCEEECCCCCC-C
Confidence 4555554 55566666666666654 355555556666665544 555555555565566666666666666 4
Q ss_pred CCCccc
Q 005045 369 TIPKEV 374 (717)
Q Consensus 369 ~~p~~~ 374 (717)
.+|..+
T Consensus 820 ~Ip~~l 825 (876)
T 4ecn_A 820 KVDEKL 825 (876)
T ss_dssp BCCSCC
T ss_pred ccCHhh
Confidence 555543
No 28
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=100.00 E-value=3.1e-42 Score=397.87 Aligned_cols=311 Identities=19% Similarity=0.224 Sum_probs=200.1
Q ss_pred CCcCCCCCCCCCEEEccCccccc-----------------cCCcccc--CCCCCCEEeccCCcCcccCChhhhccCCCCe
Q 005045 50 IPNQLSSLTKLEIIGLGGSNLTG-----------------NVPAWIG--NFSSLKALSLAWNNLRGSIPNELGQLSGLGF 110 (717)
Q Consensus 50 ~p~~~~~l~~L~~L~L~~n~l~~-----------------~~p~~~~--~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~ 110 (717)
+|..|+++++|++|+|++|.+++ .+|..++ ++++|++|+|++|++.+.+|..|.++++|++
T Consensus 440 IP~~l~~L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~iP~~l~f~~L~~L~~L~Ls~N~l~~~iP~~l~~L~~L~~ 519 (876)
T 4ecn_A 440 ISKAIQRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTDVELYNCPNMTQLPDFLYDLPELQS 519 (876)
T ss_dssp ECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEESCTTCCSCCGGGGGCSSCCE
T ss_pred hhHHHhcCCCCCEEECcCCcCCCCcccccccccccccccccCChhhhhccCCCCCEEECcCCCCCccChHHHhCCCCCCE
Confidence 56666777777777777777775 2666655 7777777777777766677777777777777
Q ss_pred EeccCCC-CCC-CCCccccCCC-------CccEEEcccCcccccCCc-ccccCCCCcceeecccccccccCCccCCCCCC
Q 005045 111 FTLYGNF-ISG-IIPSSIYNIS-------SIYYFSVTQNQLHGQLPT-DVGLTLPNLKIFAGAVNYFTGSIPVSLSNASN 180 (717)
Q Consensus 111 L~L~~N~-i~~-~~~~~~~~l~-------~L~~L~L~~N~l~~~l~~-~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~ 180 (717)
|+|++|+ +++ .+|..++.++ +|++|+|++|.++ .+|. ..+..+++|+.|++++|.+. .+| .|..+++
T Consensus 520 L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L~-~ip~~~~l~~L~~L~~L~Ls~N~l~-~lp-~~~~L~~ 596 (876)
T 4ecn_A 520 LNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLE-EFPASASLQKMVKLGLLDCVHNKVR-HLE-AFGTNVK 596 (876)
T ss_dssp EECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSCCC-BCCCHHHHTTCTTCCEEECTTSCCC-BCC-CCCTTSE
T ss_pred EECcCCCCcccccchHHHHhhhhcccccCCccEEEeeCCcCC-ccCChhhhhcCCCCCEEECCCCCcc-cch-hhcCCCc
Confidence 7777776 665 5565554443 7777777777776 6665 23346777777777777776 555 6777777
Q ss_pred CCEEeccCccccccCCCCccCCCC-CCeeeccccccCCcccCchhhhhhhccCC--CCCEEEeecCcccCcCchhh---h
Q 005045 181 LQVLDFAENGLTGTIPGNFGSLKD-LVRLNFDQNELGSREIGDLNFLKFLANCT--SLEVLGLARNSFGGEMPISI---A 254 (717)
Q Consensus 181 L~~L~l~~N~l~~~~~~~~~~l~~-L~~L~l~~N~l~~~~~~~~~~~~~~~~l~--~L~~L~L~~N~l~~~~p~~~---~ 254 (717)
|+.|+|++|+++ .+|..+..+++ |+.|++++|.++.++ ..+..++ +|+.|+|++|.+.+.+|... .
T Consensus 597 L~~L~Ls~N~l~-~lp~~l~~l~~~L~~L~Ls~N~L~~lp-------~~~~~~~~~~L~~L~Ls~N~l~g~ip~l~~~l~ 668 (876)
T 4ecn_A 597 LTDLKLDYNQIE-EIPEDFCAFTDQVEGLGFSHNKLKYIP-------NIFNAKSVYVMGSVDFSYNKIGSEGRNISCSMD 668 (876)
T ss_dssp ESEEECCSSCCS-CCCTTSCEECTTCCEEECCSSCCCSCC-------SCCCTTCSSCEEEEECCSSCTTTTSSSCSSCTT
T ss_pred ceEEECcCCccc-cchHHHhhccccCCEEECcCCCCCcCc-------hhhhccccCCCCEEECcCCcCCCccccchhhhc
Confidence 777777777777 66666777776 777777777776443 3344443 37777777777765544221 1
Q ss_pred --hccccccEEecCCCccCCCCCccccCCCCCCEEEccCCcCccccchhhhcC--------CCCCeEEcccCcCCCCCCc
Q 005045 255 --NLSTHLRRLTMGENLMHGNIPVGIGNLVNLNLLGLEGNNLSGSVPEVIGRL--------NKLEGLGLNVNKFSGLIPS 324 (717)
Q Consensus 255 --~~~~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l--------~~L~~L~Ls~N~l~~~~~~ 324 (717)
.. ++|+.|++++|.+....+..+..+++|+.|+|++|+|+ .+|..+... ++|+.|+|++|+++ .+|.
T Consensus 669 ~~~~-~~L~~L~Ls~N~L~~lp~~~~~~l~~L~~L~Ls~N~L~-~ip~~~~~~~~~~l~nl~~L~~L~Ls~N~L~-~lp~ 745 (876)
T 4ecn_A 669 DYKG-INASTVTLSYNEIQKFPTELFATGSPISTIILSNNLMT-SIPENSLKPKDGNYKNTYLLTTIDLRFNKLT-SLSD 745 (876)
T ss_dssp TCCC-CCEEEEECCSSCCCSCCHHHHHTTCCCSEEECCSCCCS-CCCTTSSSCTTSCCTTGGGCCEEECCSSCCC-CCCG
T ss_pred cccC-CCcCEEEccCCcCCccCHHHHccCCCCCEEECCCCcCC-ccChHHhccccccccccCCccEEECCCCCCc-cchH
Confidence 11 25777777777776333333446677777777777776 444433322 26777777777777 4455
Q ss_pred ccc--cccccceeecccccccccCCcCccCcCCCceEEeec------ccCCCCCCcccc
Q 005045 325 SLG--NLTILTRLWMEENRLEGSIPPSLGNCQKLLVLNLSS------NDLNGTIPKEVR 375 (717)
Q Consensus 325 ~~~--~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~l~~------N~l~~~~p~~~~ 375 (717)
.+. .+++|+.|+|++|++++ +|..+..+++|+.|+|++ |.+.+.+|..+.
T Consensus 746 ~l~~~~l~~L~~L~Ls~N~L~~-lp~~l~~L~~L~~L~Ls~N~~ls~N~l~~~ip~~l~ 803 (876)
T 4ecn_A 746 DFRATTLPYLSNMDVSYNCFSS-FPTQPLNSSQLKAFGIRHQRDAEGNRILRQWPTGIT 803 (876)
T ss_dssp GGSTTTCTTCCEEECCSSCCSS-CCCGGGGCTTCCEEECCCCBCTTCCBCCCCCCTTGG
T ss_pred HhhhccCCCcCEEEeCCCCCCc-cchhhhcCCCCCEEECCCCCCcccccccccChHHHh
Confidence 555 67777777777777774 666677777777777755 556666665553
No 29
>3v5w_A G-protein coupled receptor kinase 2; inhibitor complex, protein kinase, beta propeller, RGS homol domain; HET: 8PR; 2.07A {Homo sapiens} PDB: 3cik_A* 3krw_A* 3krx_A* 1omw_A 1ym7_A 2bcj_A* 3uzs_A 3uzt_A 3pvu_A* 3psc_A* 3pvw_A* 1bak_A
Probab=100.00 E-value=1.3e-43 Score=390.25 Aligned_cols=251 Identities=21% Similarity=0.285 Sum_probs=196.7
Q ss_pred cccccccccccccCcccccceEEEEeC-CCchhhhHHhHhhh---hhH---HHHHHHHHHHHhcCCCCceeEEEEeeccc
Q 005045 385 SKSTDNFSKENLIGTGSFGSVYKGTLG-DGTIVAIKVLKLQQ---QGA---LKSFIDECNALKSTRHRNILRVITACSSV 457 (717)
Q Consensus 385 ~~~~~~y~~~~~ig~g~~g~v~~~~~~-~~~~vavK~~~~~~---~~~---~~~~~~e~~~l~~l~h~ni~~~~~~~~~~ 457 (717)
...-++|++.+.||+|+||.||+|+.+ +|+.||+|++.... ... ......++.+++.++||||++++++
T Consensus 185 ~~slddf~i~k~LG~G~fG~V~la~~~~tg~~~AiK~i~K~~i~~~~~~~~~~~E~~~l~ll~~~~HP~IV~l~~~---- 260 (689)
T 3v5w_A 185 HLTMNDFSVHRIIGRGGFGEVYGCRKADTGKMYAMKCLDKKRIKMKQGETLALNERIMLSLVSTGDCPFIVCMSYA---- 260 (689)
T ss_dssp CCCGGGEEEEEEEEECSSEEEEEEEETTTCCEEEEEEEEHHHHHHTTCHHHHHHHHHHHHHHSSSCCTTBCCEEEE----
T ss_pred CCchHHeEEEEEEecccCeEEEEEEECCCCCEEEEEEEeHHHcchhhhHHHHHHHHHHHHHHhhCCCCCEeEEEEE----
Confidence 345678999999999999999999965 89999999986432 111 2233345677788899999999999
Q ss_pred cCCCCceEEEEEecCCCCChhhhccCCCCCcccccccCHHHHHHHHHHHHHHHHHHHhcCCCCeeecCCCCCCEEeCCCC
Q 005045 458 DLEGNDFKALVFEFMSNGNLDQWLHPSPAEHYQFKKLSVIQRLNIAIDVASALDYLHHHCDTPIAHCDLKPSNVLLDKDM 537 (717)
Q Consensus 458 ~~~~~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~dlkp~NIll~~~~ 537 (717)
+.+.+.+|+||||++||+|.+++... +.+++..++.++.||+.||+|||++ |||||||||+|||++.+|
T Consensus 261 -f~~~~~lylVmEy~~GGdL~~~l~~~-------~~l~E~~a~~y~~qIl~aL~yLH~~---gIiHRDLKPeNILld~~G 329 (689)
T 3v5w_A 261 -FHTPDKLSFILDLMNGGDLHYHLSQH-------GVFSEADMRFYAAEIILGLEHMHNR---FVVYRDLKPANILLDEHG 329 (689)
T ss_dssp -EECSSEEEEEECCCCSCBHHHHHHHH-------CCCCHHHHHHHHHHHHHHHHHHHTT---TEECCCCSGGGEEECTTS
T ss_pred -EEECCEEEEEEecCCCCcHHHHHHhc-------CCCCHHHHHHHHHHHHHHHHHHHHC---CccccCCchHHeEEeCCC
Confidence 45566999999999999999999754 6799999999999999999999998 999999999999999999
Q ss_pred ceEEeeeccchhcccccCCCCCCcceeecccccccccCCCccC-C-CCCcccchhhHHHHHHHHHhCCCCCCCCCCCchh
Q 005045 538 TAHVGDFGLAKFLFEISDNPSKNQTVSIGLKGSIGYIPPEHMN-G-QVSILGDIYSYGILLLEMFTGKRPTGDMFKDDFS 615 (717)
Q Consensus 538 ~~kl~Dfg~~~~~~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~-~-~~~~~sDvwslG~vl~elltg~~p~~~~~~~~~~ 615 (717)
.+||+|||+|+.... .......||+.|+|||++. + .|+.++|||||||++|||++|..||.+....+..
T Consensus 330 ~vKL~DFGlA~~~~~---------~~~~t~~GTp~YmAPEvl~~~~~y~~~vDiWSLGvilYEmLtG~~PF~~~~~~~~~ 400 (689)
T 3v5w_A 330 HVRISDLGLACDFSK---------KKPHASVGTHGYMAPEVLQKGVAYDSSADWFSLGCMLFKLLRGHSPFRQHKTKDKH 400 (689)
T ss_dssp CEEECCCTTCEECSS---------CCCCSCCSCGGGCCHHHHSTTCCCCTHHHHHHHHHHHHHHHHSSCTTCGGGCCCHH
T ss_pred CEEecccceeeecCC---------CCCCCccCCcCccCHHHHhCCCCCCcHHHHHHHHHHHHHHHhCCCCCCCCChHHHH
Confidence 999999999986521 1223467999999999975 4 4899999999999999999999999754332211
Q ss_pred hhHHHHhcCChhhhhhcCCCCCCCCCCcHHHHHHHHHHHHHHhhhhhhhcchhhhHHHHHHHHHHhhccCCCCcCCCCC-
Q 005045 616 IHMFVSMALPDHVMDILDPSMPLDEENDEEQIEEVIEEKEMMIHIDLEVNTKNKLEECFVSVLRIGLMCSTTSPRERIA- 694 (717)
Q Consensus 616 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~cl~~~p~~Rps- 694 (717)
. .. ..+....... +...+..+.+|+.+||+.||++|++
T Consensus 401 ~--i~--------~~i~~~~~~~-------------------------------p~~~S~~a~dLI~~lL~~dP~~Rl~~ 439 (689)
T 3v5w_A 401 E--ID--------RMTLTMAVEL-------------------------------PDSFSPELRSLLEGLLQRDVNRRLGC 439 (689)
T ss_dssp H--HH--------HHHHHCCCCC-------------------------------CTTSCHHHHHHHHHHTCSCGGGCTTC
T ss_pred H--HH--------HhhcCCCCCC-------------------------------CccCCHHHHHHHHHHccCCHhHCCCC
Confidence 0 00 0001111100 0112456788999999999999998
Q ss_pred ----HHHHHH
Q 005045 695 ----MNVVVN 700 (717)
Q Consensus 695 ----~~eil~ 700 (717)
++||.+
T Consensus 440 ~~~ga~ei~~ 449 (689)
T 3v5w_A 440 LGRGAQEVKE 449 (689)
T ss_dssp SSSTHHHHTT
T ss_pred CCCCHHHHhc
Confidence 677764
No 30
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=100.00 E-value=7.4e-42 Score=384.11 Aligned_cols=361 Identities=19% Similarity=0.229 Sum_probs=255.5
Q ss_pred cceeeCCcc--eecEEEcCCCcCcCCCCcCCcCCCCCCEEECCCCcccccCCcCCCCCCCCCEEEccCccccccCCcccc
Q 005045 2 ELIMIPEHL--MTQDLNLTYNYLSGKIPTNLSHCTELRSFEASVNDFVGQIPNQLSSLTKLEIIGLGGSNLTGNVPAWIG 79 (717)
Q Consensus 2 ~l~~~p~~~--~~~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~ 79 (717)
.++.+|... .+++|+|++|++++..|..|..+++|++|+|++|.+++..|..|.++++|++|+|++|.+++..|..|+
T Consensus 16 ~l~~ip~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~ 95 (549)
T 2z81_A 16 SFTSIPSGLTAAMKSLDLSFNKITYIGHGDLRACANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSDNHLSSLSSSWFG 95 (549)
T ss_dssp CCSSCCSCCCTTCCEEECCSSCCCEECSSTTSSCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCSCCHHHHT
T ss_pred ccccccccCCCCccEEECcCCccCccChhhhhcCCcccEEECCCCCcCccChhhccccccCCEEECCCCccCccCHHHhc
Confidence 467788766 899999999999988899999999999999999999988889999999999999999999977777799
Q ss_pred CCCCCCEEeccCCcCccc-CChhhhccCCCCeEeccCCC-CCCCCCccccCCCCccEEEcccCcccccCCcccc------
Q 005045 80 NFSSLKALSLAWNNLRGS-IPNELGQLSGLGFFTLYGNF-ISGIIPSSIYNISSIYYFSVTQNQLHGQLPTDVG------ 151 (717)
Q Consensus 80 ~l~~L~~L~L~~n~l~~~-~~~~~~~l~~L~~L~L~~N~-i~~~~~~~~~~l~~L~~L~L~~N~l~~~l~~~~~------ 151 (717)
++++|++|+|++|++++. .|..|.++++|++|+|++|. +..+.+..|.++++|++|++++|.+++.+|..+.
T Consensus 96 ~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~ 175 (549)
T 2z81_A 96 PLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRNYQSQSLKSIRDIH 175 (549)
T ss_dssp TCTTCCEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTTTTTTCSEEE
T ss_pred cCCCCcEEECCCCcccccchhhhhhccCCccEEECCCCccccccCHhhhhcccccCeeeccCCcccccChhhhhccccCc
Confidence 999999999999999863 56789999999999999998 5555557899999999999999998865554432
Q ss_pred -----------------cCCCCcceeecccccccccC--Ccc-CCC----------------------------------
Q 005045 152 -----------------LTLPNLKIFAGAVNYFTGSI--PVS-LSN---------------------------------- 177 (717)
Q Consensus 152 -----------------~~l~~L~~L~l~~n~l~~~~--~~~-~~~---------------------------------- 177 (717)
..+++|+.|++++|.+.+.. +.. ...
T Consensus 176 ~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~~~~~L~~ 255 (549)
T 2z81_A 176 HLTLHLSESAFLLEIFADILSSVRYLELRDTNLARFQFSPLPVDEVSSPMKKLAFRGSVLTDESFNELLKLLRYILELSE 255 (549)
T ss_dssp EEEEECSBSTTHHHHHHHSTTTBSEEEEESCBCTTCCCCCCSSCCCCCCCCEEEEESCEEEHHHHHHHHGGGGGCTTCCE
T ss_pred eEecccCcccccchhhHhhcccccEEEccCCccccccccccchhhhhhcccceeccccccchhHHHHHHHHhhhhccccc
Confidence 24677778888887776531 000 000
Q ss_pred -----------------------------------------------------CCCCCEEeccCccccccCCCCc-cCCC
Q 005045 178 -----------------------------------------------------ASNLQVLDFAENGLTGTIPGNF-GSLK 203 (717)
Q Consensus 178 -----------------------------------------------------l~~L~~L~l~~N~l~~~~~~~~-~~l~ 203 (717)
..+|++|++++|.++ .+|..+ ..++
T Consensus 256 l~l~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~l~~~~~~~~~L~~L~l~~n~l~-~ip~~~~~~l~ 334 (549)
T 2z81_A 256 VEFDDCTLNGLGDFNPSESDVVSELGKVETVTIRRLHIPQFYLFYDLSTVYSLLEKVKRITVENSKVF-LVPCSFSQHLK 334 (549)
T ss_dssp EEEESCEEECCSCCCCCTTTCCCCCTTCCEEEEESCBCSCGGGSCCCCHHHHHSTTCCEEEEESSCCC-CCCHHHHHHCT
T ss_pred cccccccccccccccccchhhhhhhcccccccccccccchhhhcccchhhhhhcccceEEEeccCccc-cCCHHHHhcCc
Confidence 112333333333333 233222 3456
Q ss_pred CCCeeeccccccCCcccCchhhhhhhccCCCCCEEEeecCcccCcCc--hhhhhccccccEEecCCCccCCCCCccccCC
Q 005045 204 DLVRLNFDQNELGSREIGDLNFLKFLANCTSLEVLGLARNSFGGEMP--ISIANLSTHLRRLTMGENLMHGNIPVGIGNL 281 (717)
Q Consensus 204 ~L~~L~l~~N~l~~~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~~~p--~~~~~~~~~L~~L~l~~N~l~~~~~~~~~~l 281 (717)
+|+.|++++|+++..... .+..+..+++|++|+|++|.+++..+ ..+..+ ++|++|++++|+++ .+|..+..+
T Consensus 335 ~L~~L~Ls~N~l~~~~~~---~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~l-~~L~~L~Ls~N~l~-~lp~~~~~~ 409 (549)
T 2z81_A 335 SLEFLDLSENLMVEEYLK---NSACKGAWPSLQTLVLSQNHLRSMQKTGEILLTL-KNLTSLDISRNTFH-PMPDSCQWP 409 (549)
T ss_dssp TCCEEECCSSCCCHHHHH---HHTCTTSSTTCCEEECTTSCCCCHHHHHHHGGGC-TTCCEEECTTCCCC-CCCSCCCCC
T ss_pred cccEEEccCCcccccccc---chhhhhccccCcEEEccCCcccccccchhhhhcC-CCCCEEECCCCCCc-cCChhhccc
Confidence 666666666666542200 01124455666666666666652211 223333 35666666666665 345555555
Q ss_pred CCCCEEEccCCcCccccchh------------------hhcCCCCCeEEcccCcCCCCCCcccccccccceeeccccccc
Q 005045 282 VNLNLLGLEGNNLSGSVPEV------------------IGRLNKLEGLGLNVNKFSGLIPSSLGNLTILTRLWMEENRLE 343 (717)
Q Consensus 282 ~~L~~L~L~~N~l~~~~~~~------------------~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~ 343 (717)
++|++|++++|+++ .+|.. +..+++|++|+|++|+++.+ |. ...+++|+.|+|++|+++
T Consensus 410 ~~L~~L~Ls~N~l~-~l~~~~~~~L~~L~Ls~N~l~~~~~~l~~L~~L~Ls~N~l~~i-p~-~~~l~~L~~L~Ls~N~l~ 486 (549)
T 2z81_A 410 EKMRFLNLSSTGIR-VVKTCIPQTLEVLDVSNNNLDSFSLFLPRLQELYISRNKLKTL-PD-ASLFPVLLVMKISRNQLK 486 (549)
T ss_dssp TTCCEEECTTSCCS-CCCTTSCTTCSEEECCSSCCSCCCCCCTTCCEEECCSSCCSSC-CC-GGGCTTCCEEECCSSCCC
T ss_pred ccccEEECCCCCcc-cccchhcCCceEEECCCCChhhhcccCChhcEEECCCCccCcC-CC-cccCccCCEEecCCCccC
Confidence 55555555555554 22221 13678888888888888844 44 467888999999999998
Q ss_pred ccCCcCccCcCCCceEEeecccCCCCCC
Q 005045 344 GSIPPSLGNCQKLLVLNLSSNDLNGTIP 371 (717)
Q Consensus 344 ~~~p~~~~~l~~L~~L~l~~N~l~~~~p 371 (717)
+..|..+..+++|+.|++++|++++.+|
T Consensus 487 ~~~~~~~~~l~~L~~L~l~~N~~~~~~~ 514 (549)
T 2z81_A 487 SVPDGIFDRLTSLQKIWLHTNPWDCSCP 514 (549)
T ss_dssp CCCTTGGGGCTTCCEEECCSSCBCCCHH
T ss_pred CcCHHHHhcCcccCEEEecCCCccCCCc
Confidence 7777788889999999999999988887
No 31
>3uto_A Twitchin; kinase, muscle sarcomere, transferase; HET: FLC P33; 2.40A {Caenorhabditis elegans} PDB: 1koa_A
Probab=100.00 E-value=3.9e-43 Score=390.55 Aligned_cols=251 Identities=22% Similarity=0.325 Sum_probs=203.2
Q ss_pred ccccccccccCcccccceEEEEeC-CCchhhhHHhHhhhhhHHHHHHHHHHHHhcCCCCceeEEEEeeccccCCCCceEE
Q 005045 388 TDNFSKENLIGTGSFGSVYKGTLG-DGTIVAIKVLKLQQQGALKSFIDECNALKSTRHRNILRVITACSSVDLEGNDFKA 466 (717)
Q Consensus 388 ~~~y~~~~~ig~g~~g~v~~~~~~-~~~~vavK~~~~~~~~~~~~~~~e~~~l~~l~h~ni~~~~~~~~~~~~~~~~~~~ 466 (717)
.++|++.+.||+|+||.||+|+++ +|+.||+|++........+.+.+|+++|+.++||||+++++++ .+.+..|
T Consensus 156 l~~Y~i~~~lG~G~fg~V~~~~~~~tg~~~AiK~i~~~~~~~~~~~~~Ei~il~~l~hpnIv~l~~~~-----~~~~~~~ 230 (573)
T 3uto_A 156 LDHYDIHEELGTGAFGVVHRVTERATGNNFAAKFVMTPHESDKETVRKEIQTMSVLRHPTLVNLHDAF-----EDDNEMV 230 (573)
T ss_dssp GGTEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEECCSHHHHHHHHHHHHHHHHTCCTTBCCEEEEE-----ECSSEEE
T ss_pred ccccEEEEEEeeccCeEEEEEEECCCCCEEEEEEEeccchhhHHHHHHHHHHHHhCCCCCCCeEEEEE-----EECCEEE
Confidence 468999999999999999999965 8999999998765555567889999999999999999999994 4566999
Q ss_pred EEEecCCCCChhhhccCCCCCcccccccCHHHHHHHHHHHHHHHHHHHhcCCCCeeecCCCCCCEEeCCC--CceEEeee
Q 005045 467 LVFEFMSNGNLDQWLHPSPAEHYQFKKLSVIQRLNIAIDVASALDYLHHHCDTPIAHCDLKPSNVLLDKD--MTAHVGDF 544 (717)
Q Consensus 467 lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~dlkp~NIll~~~--~~~kl~Df 544 (717)
+|||||+||+|.+++.... ..+++.++..++.||+.||+|||++ +|+||||||+|||++.+ +.+||+||
T Consensus 231 iv~E~~~gg~L~~~i~~~~------~~l~e~~~~~~~~qi~~al~ylH~~---~iiHRDlKp~Nill~~~~~~~vKl~DF 301 (573)
T 3uto_A 231 MIYEFMSGGELFEKVADEH------NKMSEDEAVEYMRQVCKGLCHMHEN---NYVHLDLKPENIMFTTKRSNELKLIDF 301 (573)
T ss_dssp EEEECCCCCBHHHHHTCTT------SCEEHHHHHHHHHHHHHHHHHHHHT---TEECCCCCGGGEEESSSSCCCEEECCC
T ss_pred EEEeecCCCcHHHHHHHhC------CCCCHHHHHHHHHHHHHHHHHHHHC---CeeeccCChhhccccCCCCCCEEEeec
Confidence 9999999999999986542 5689999999999999999999998 99999999999999854 89999999
Q ss_pred ccchhcccccCCCCCCcceeecccccccccCCCccCCC-CCcccchhhHHHHHHHHHhCCCCCCCCCCCchhhhHHHHhc
Q 005045 545 GLAKFLFEISDNPSKNQTVSIGLKGSIGYIPPEHMNGQ-VSILGDIYSYGILLLEMFTGKRPTGDMFKDDFSIHMFVSMA 623 (717)
Q Consensus 545 g~~~~~~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~-~~~~sDvwslG~vl~elltg~~p~~~~~~~~~~~~~~~~~~ 623 (717)
|+|+.+. .........||+.|+|||++.++ ++.++||||+||++|+|++|..||.+....+ ....
T Consensus 302 G~a~~~~--------~~~~~~~~~GT~~y~APEv~~~~~y~~~~DiWSlGvilyeml~G~~Pf~~~~~~~--~~~~---- 367 (573)
T 3uto_A 302 GLTAHLD--------PKQSVKVTTGTAEFAAPEVAEGKPVGYYTDMWSVGVLSYILLSGLSPFGGENDDE--TLRN---- 367 (573)
T ss_dssp SSCEECC--------TTSEEEEECSSGGGCCHHHHTTCCBCHHHHHHHHHHHHHHHHHSCCSSCCSSHHH--HHHH----
T ss_pred cceeEcc--------CCCceeeeEECccccCHHHhCCCCCCcHHHHHHHHHHHHHHHHCCCCCCCcCHHH--HHHH----
Confidence 9998762 12233456799999999997765 8999999999999999999999997542211 1111
Q ss_pred CChhhhhhcCCCCCCCCCCcHHHHHHHHHHHHHHhhhhhhhcchhhhHHHHHHHHHHhhccCCCCcCCCCCHHHHHH
Q 005045 624 LPDHVMDILDPSMPLDEENDEEQIEEVIEEKEMMIHIDLEVNTKNKLEECFVSVLRIGLMCSTTSPRERIAMNVVVN 700 (717)
Q Consensus 624 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~cl~~~p~~Rps~~eil~ 700 (717)
+......... ......+..+.+|+.+||+.||++|||++|+++
T Consensus 368 -------i~~~~~~~~~---------------------------~~~~~~s~~~~dli~~~L~~dp~~R~t~~e~l~ 410 (573)
T 3uto_A 368 -------VKSCDWNMDD---------------------------SAFSGISEDGKDFIRKLLLADPNTRMTIHQALE 410 (573)
T ss_dssp -------HHTTCCCCCS---------------------------GGGTTSCHHHHHHHHTTSCSSGGGSCCHHHHHH
T ss_pred -------HHhCCCCCCc---------------------------ccccCCCHHHHHHHHHHccCChhHCcCHHHHhc
Confidence 1111100000 001112455788999999999999999999986
No 32
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=100.00 E-value=1.3e-41 Score=399.88 Aligned_cols=363 Identities=23% Similarity=0.246 Sum_probs=292.9
Q ss_pred cceeeCCcc-eecEEEcCCCcCcCCCCcCCcCCCCCCEEECCCCcccccC-CcCCCCCCCCCEEEccCccccccCCcccc
Q 005045 2 ELIMIPEHL-MTQDLNLTYNYLSGKIPTNLSHCTELRSFEASVNDFVGQI-PNQLSSLTKLEIIGLGGSNLTGNVPAWIG 79 (717)
Q Consensus 2 ~l~~~p~~~-~~~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~-p~~~~~l~~L~~L~L~~n~l~~~~p~~~~ 79 (717)
.++.||... .+++|+|++|.+++..|..|.++++|++|+|++|.+.+.+ |..|.++++|++|+|++|.|++..|..|.
T Consensus 15 ~L~~vP~lp~~l~~LdLs~N~i~~i~~~~~~~l~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls~N~l~~~~p~~~~ 94 (844)
T 3j0a_A 15 NLTQVPQVLNTTERLLLSFNYIRTVTASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSSKIYFLHPDAFQ 94 (844)
T ss_dssp CSSCCCSSCTTCCEEEEESCCCCEECSSSCSSCCSCSEEEECTTCCCCEECTTTTSSCTTCCEEECTTCCCCEECTTSSC
T ss_pred CCCCCCCCCCCcCEEECCCCcCCccChhHCcccccCeEEeCCCCCCccccCHHHhcCCCCCCEEECCCCcCcccCHhHcc
Confidence 577888832 8999999999999888999999999999999999655455 78899999999999999999988899999
Q ss_pred CCCCCCEEeccCCcCcccCChh--hhccCCCCeEeccCCCCCCCCC-ccccCCCCccEEEcccCcccccCCcccccCC--
Q 005045 80 NFSSLKALSLAWNNLRGSIPNE--LGQLSGLGFFTLYGNFISGIIP-SSIYNISSIYYFSVTQNQLHGQLPTDVGLTL-- 154 (717)
Q Consensus 80 ~l~~L~~L~L~~n~l~~~~~~~--~~~l~~L~~L~L~~N~i~~~~~-~~~~~l~~L~~L~L~~N~l~~~l~~~~~~~l-- 154 (717)
++++|++|+|++|.+++..|.. |.++++|++|+|++|.+++..+ ..|.++++|++|+|++|.+++..+..+. .+
T Consensus 95 ~l~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~L~~L~~L~Ls~N~i~~~~~~~l~-~l~~ 173 (844)
T 3j0a_A 95 GLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLVCEHELE-PLQG 173 (844)
T ss_dssp SCSSCCCEECTTCCCSSCCSTTCCCSSCSSCCEEEEESCCCCCCCCCGGGGTCSSCCEEEEESSCCCCCCSGGGH-HHHH
T ss_pred CCcccCEeeCcCCCCCcccccCccccccCCCCEEECCCCcccccccchhHhhCCCCCEEECCCCcCCeeCHHHcc-cccC
Confidence 9999999999999999766655 9999999999999999987765 5799999999999999999754444332 22
Q ss_pred CC------------------------------cceeecccccccccCCccCC----------------------------
Q 005045 155 PN------------------------------LKIFAGAVNYFTGSIPVSLS---------------------------- 176 (717)
Q Consensus 155 ~~------------------------------L~~L~l~~n~l~~~~~~~~~---------------------------- 176 (717)
++ |+.|++++|.+.+..+..+.
T Consensus 174 ~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~~l~~L~l~~~~~~~~~~~~~l~ 253 (844)
T 3j0a_A 174 KTLSFFSLAANSLYSRVSVDWGKCMNPFRNMVLEILDVSGNGWTVDITGNFSNAISKSQAFSLILAHHIMGAGFGFHNIK 253 (844)
T ss_dssp CSSCCCEECCSBSCCCCCCCCCSSSCTTTTCCBSEEBCSSCCSSTTTTSGGGGTSCSCCBSEEECCSSCCBCSSSCSSST
T ss_pred CccceEECCCCccccccccchhhcCCccccCceeEEecCCCcCchhHHHHHHhhcCcccccceecccccccccccccccC
Confidence 33 56666666655443332221
Q ss_pred --------C--CCCCCEEeccCccccccCCCCccCCCCCCeeeccccccCCcccCchhhhhhhccCCCCCEEEeecCccc
Q 005045 177 --------N--ASNLQVLDFAENGLTGTIPGNFGSLKDLVRLNFDQNELGSREIGDLNFLKFLANCTSLEVLGLARNSFG 246 (717)
Q Consensus 177 --------~--l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~l~~L~~L~L~~N~l~ 246 (717)
+ .++|+.|++++|.+++..+..|..+++|+.|++++|.++.+. +..|.++++|++|+|++|.++
T Consensus 254 ~~~~~~f~~l~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~------~~~~~~l~~L~~L~Ls~N~l~ 327 (844)
T 3j0a_A 254 DPDQNTFAGLARSSVRHLDLSHGFVFSLNSRVFETLKDLKVLNLAYNKINKIA------DEAFYGLDNLQVLNLSYNLLG 327 (844)
T ss_dssp TGGGTTTTTTTTSCCCEEECTTCCCCEECSCCSSSCCCCCEEEEESCCCCEEC------TTTTTTCSSCCEEEEESCCCS
T ss_pred CCChhhhhccccCCccEEECCCCcccccChhhhhcCCCCCEEECCCCcCCCCC------hHHhcCCCCCCEEECCCCCCC
Confidence 1 257888888888888777888889999999999999998876 667888999999999999998
Q ss_pred CcCchhhhhccccccEEecCCCccCCCCCccccCCCCCCEEEccCCcCcccc----------------------------
Q 005045 247 GEMPISIANLSTHLRRLTMGENLMHGNIPVGIGNLVNLNLLGLEGNNLSGSV---------------------------- 298 (717)
Q Consensus 247 ~~~p~~~~~~~~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~---------------------------- 298 (717)
+..|..+..+ ++|+.|++++|.+.+..+..|.++++|+.|+|++|.+++..
T Consensus 328 ~~~~~~~~~l-~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~L~~L~l~~N~l~~l~~~~~~l~~L 406 (844)
T 3j0a_A 328 ELYSSNFYGL-PKVAYIDLQKNHIAIIQDQTFKFLEKLQTLDLRDNALTTIHFIPSIPDIFLSGNKLVTLPKINLTANLI 406 (844)
T ss_dssp CCCSCSCSSC-TTCCEEECCSCCCCCCCSSCSCSCCCCCEEEEETCCSCCCSSCCSCSEEEEESCCCCCCCCCCTTCCEE
T ss_pred ccCHHHhcCC-CCCCEEECCCCCCCccChhhhcCCCCCCEEECCCCCCCcccCCCCcchhccCCCCccccccccccccee
Confidence 7778788777 58999999999998888888999999999999998876421
Q ss_pred ------------chhhhcCCCCCeEEcccCcCCCC------------------------------CCcccccccccceee
Q 005045 299 ------------PEVIGRLNKLEGLGLNVNKFSGL------------------------------IPSSLGNLTILTRLW 336 (717)
Q Consensus 299 ------------~~~~~~l~~L~~L~Ls~N~l~~~------------------------------~~~~~~~l~~L~~L~ 336 (717)
+..+.++++|+.|+|++|++++. .+..|.++++|+.|+
T Consensus 407 ~ls~N~l~~l~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~L~~L~Ls~N~l~~~~~~~~~~~~~~~l~~L~~L~ 486 (844)
T 3j0a_A 407 HLSENRLENLDILYFLLRVPHLQILILNQNRFSSCSGDQTPSENPSLEQLFLGENMLQLAWETELCWDVFEGLSHLQVLY 486 (844)
T ss_dssp ECCSCCCCSSTTHHHHTTCTTCCEEEEESCCCCCCCSSSSSCSCTTCCBCEEESCCCSSSCCSCCCSSCSSCBCCEECCC
T ss_pred ecccCccccCchhhhhhcCCccceeeCCCCcccccccccccccCCccccccCCCCccccccccccchhhhcCcccccEEE
Confidence 11233566777777777776633 224467788899999
Q ss_pred cccccccccCCcCccCcCCCceEEeecccCCCCCCc
Q 005045 337 MEENRLEGSIPPSLGNCQKLLVLNLSSNDLNGTIPK 372 (717)
Q Consensus 337 L~~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~ 372 (717)
|++|++++..|..|..+++|+.|+|++|.|++..|.
T Consensus 487 Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~ 522 (844)
T 3j0a_A 487 LNHNYLNSLPPGVFSHLTALRGLSLNSNRLTVLSHN 522 (844)
T ss_dssp CCHHHHTTCCTTSSSSCCSCSEEEEESCCCSSCCCC
T ss_pred CCCCcccccChhHccchhhhheeECCCCCCCccChh
Confidence 999999988888889999999999999999854443
No 33
>2qkw_B Protein kinase; three-helix bundle motif, AVRPTO-PTO duplex, layered beta- sheets, transferas; HET: SEP TPO; 3.20A {Solanum pimpinellifolium} PDB: 3hgk_A*
Probab=100.00 E-value=5.3e-42 Score=357.54 Aligned_cols=285 Identities=29% Similarity=0.503 Sum_probs=225.8
Q ss_pred CCCcccccccccccccccccCcccccceEEEEeCCCchhhhHHhHhhhhhHHHHHHHHHHHHhcCCCCceeEEEEeeccc
Q 005045 378 GMSYSDISKSTDNFSKENLIGTGSFGSVYKGTLGDGTIVAIKVLKLQQQGALKSFIDECNALKSTRHRNILRVITACSSV 457 (717)
Q Consensus 378 ~~s~~~~~~~~~~y~~~~~ig~g~~g~v~~~~~~~~~~vavK~~~~~~~~~~~~~~~e~~~l~~l~h~ni~~~~~~~~~~ 457 (717)
.+++.++....++|++.+.||+|+||.||+|++++++.||+|.+........+.+.+|+++++.++||||+++++++
T Consensus 28 ~~~~~~~~~~~~~y~~~~~lg~G~~g~Vy~~~~~~~~~vavK~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~--- 104 (321)
T 2qkw_B 28 RVPLVDLEEATNNFDHKFLIGHGVFGKVYKGVLRDGAKVALKRRTPESSQGIEEFETEIETLSFCRHPHLVSLIGFC--- 104 (321)
T ss_dssp --CCSCCCCCCCCCSCCCCSCBCSSSEEEEEECTTCCEEEEEECCSCCSSHHHHHHHHHHGGGSCCCTTBCCEEEEC---
T ss_pred eecHHHHHHHHhccCccceeecCCCeeEEEEEECCCCEEEEEEecccChHHHHHHHHHHHHHHhCCCCCEeeEEEEE---
Confidence 56778888999999999999999999999999888999999988766556678899999999999999999999994
Q ss_pred cCCCCceEEEEEecCCCCChhhhccCCCCCcccccccCHHHHHHHHHHHHHHHHHHHhcCCCCeeecCCCCCCEEeCCCC
Q 005045 458 DLEGNDFKALVFEFMSNGNLDQWLHPSPAEHYQFKKLSVIQRLNIAIDVASALDYLHHHCDTPIAHCDLKPSNVLLDKDM 537 (717)
Q Consensus 458 ~~~~~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~dlkp~NIll~~~~ 537 (717)
...+..++||||+++++|.+++..... ....+++..+..++.||+.||+|||+. +|+||||||+||+++.++
T Consensus 105 --~~~~~~~lv~e~~~~~~L~~~l~~~~~---~~~~~~~~~~~~i~~~i~~~l~~lH~~---~ivH~dlkp~Nil~~~~~ 176 (321)
T 2qkw_B 105 --DERNEMILIYKYMENGNLKRHLYGSDL---PTMSMSWEQRLEICIGAARGLHYLHTR---AIIHRDVKSINILLDENF 176 (321)
T ss_dssp --CCTTCCEEEEECCTTCBTGGGSSSSCC---CSCCCCHHHHHHHHHHHHHHHHHHHHT---TEECSCCCSTTEEECTTC
T ss_pred --cCCCeEEEEEEcCCCCcHHHHHhccCC---CccccCHHHHHHHHHHHHHHHHHhcCC---CeecCCCCHHHEEECCCC
Confidence 445688999999999999999975431 124589999999999999999999997 999999999999999999
Q ss_pred ceEEeeeccchhcccccCCCCCCcceeecccccccccCCCcc-CCCCCcccchhhHHHHHHHHHhCCCCCCCCCCCch-h
Q 005045 538 TAHVGDFGLAKFLFEISDNPSKNQTVSIGLKGSIGYIPPEHM-NGQVSILGDIYSYGILLLEMFTGKRPTGDMFKDDF-S 615 (717)
Q Consensus 538 ~~kl~Dfg~~~~~~~~~~~~~~~~~~~~~~~~~~~y~aPE~~-~~~~~~~sDvwslG~vl~elltg~~p~~~~~~~~~-~ 615 (717)
.+||+|||.+....... .........|++.|+|||++ .+.++.++|||||||++|+|++|..||....+... .
T Consensus 177 ~~kl~Dfg~~~~~~~~~-----~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Di~slG~il~ell~g~~p~~~~~~~~~~~ 251 (321)
T 2qkw_B 177 VPKITDFGISKKGTELD-----QTHLSTVVKGTLGYIDPEYFIKGRLTEKSDVYSFGVVLFEVLCARSAIVQSLPREMVN 251 (321)
T ss_dssp CEEECCCTTCEECSSSS-----CCCCBCCCEEETTTCCHHHHHHCBCCTHHHHHHHHHHHHHHHHCCTTCSCSSSSSCCC
T ss_pred CEEEeeccccccccccc-----ccccccccCCCccccCHHHhcCCCCCcccchHhHHHHHHHHHhCCCcccccCcHHHHH
Confidence 99999999987642111 11122334589999999996 45689999999999999999999999976543322 1
Q ss_pred hhHHHHh-cCChhhhhhcCCCCCCCCCCcHHHHHHHHHHHHHHhhhhhhhcchhhhHHHHHHHHHHhhccCCCCcCCCCC
Q 005045 616 IHMFVSM-ALPDHVMDILDPSMPLDEENDEEQIEEVIEEKEMMIHIDLEVNTKNKLEECFVSVLRIGLMCSTTSPRERIA 694 (717)
Q Consensus 616 ~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~cl~~~p~~Rps 694 (717)
...+... .....+...+++..... ...+++..+.+++.+||+.+|++|||
T Consensus 252 ~~~~~~~~~~~~~~~~~~~~~~~~~-----------------------------~~~~~~~~l~~li~~~l~~dP~~Rps 302 (321)
T 2qkw_B 252 LAEWAVESHNNGQLEQIVDPNLADK-----------------------------IRPESLRKFGDTAVKCLALSSEDRPS 302 (321)
T ss_dssp HHHHTHHHHTTTCCCSSSSSSCTTC-----------------------------SCHHHHHHHHHHHHHHTCSSGGGSCC
T ss_pred HHHHhhhccccccHHHhcChhhccc-----------------------------cCHHHHHHHHHHHHHHcCCCcccCcC
Confidence 2111111 11111222333322211 23456788999999999999999999
Q ss_pred HHHHHHHHHHHHH
Q 005045 695 MNVVVNNLKTIRN 707 (717)
Q Consensus 695 ~~eil~~l~~i~~ 707 (717)
++|+++.|+.+.+
T Consensus 303 ~~ell~~L~~~l~ 315 (321)
T 2qkw_B 303 MGDVLWKLEYALR 315 (321)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhh
Confidence 9999999998875
No 34
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=100.00 E-value=3.2e-41 Score=383.57 Aligned_cols=353 Identities=19% Similarity=0.174 Sum_probs=303.1
Q ss_pred ecEEEcCCCcCcCCCCcCCcCCCCCCEEECCCCcccccCCcCCCCCCCCCEEEccCccccccCCccccCCCCCCEEeccC
Q 005045 12 TQDLNLTYNYLSGKIPTNLSHCTELRSFEASVNDFVGQIPNQLSSLTKLEIIGLGGSNLTGNVPAWIGNFSSLKALSLAW 91 (717)
Q Consensus 12 ~~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~ 91 (717)
..+++.++++++ .+|..+. ++|++|+|++|.+++..+..|.++++|++|+|++|.+++..|..|.++++|++|+|++
T Consensus 13 ~~~~~c~~~~l~-~ip~~~~--~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~i~~~~~~~l~~L~~L~Ls~ 89 (606)
T 3vq2_A 13 NITYQCMDQKLS-KVPDDIP--SSTKNIDLSFNPLKILKSYSFSNFSELQWLDLSRCEIETIEDKAWHGLHHLSNLILTG 89 (606)
T ss_dssp TTEEECTTSCCS-SCCTTSC--TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTT
T ss_pred CCceEccCCCcc-cCCCCCC--CCcCEEECCCCCcCEeChhhccCCccCcEEeCCCCcccccCHHHhhchhhcCEeECCC
Confidence 367999999999 6777665 8999999999999988888999999999999999999988899999999999999999
Q ss_pred CcCcccCChhhhccCCCCeEeccCCCCCCCCCccccCCCCccEEEcccCcccc-cCCcccccCCCCcceeeccccccccc
Q 005045 92 NNLRGSIPNELGQLSGLGFFTLYGNFISGIIPSSIYNISSIYYFSVTQNQLHG-QLPTDVGLTLPNLKIFAGAVNYFTGS 170 (717)
Q Consensus 92 n~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~-~l~~~~~~~l~~L~~L~l~~n~l~~~ 170 (717)
|++++..|.+|.++++|++|+|++|.+++..+..|+++++|++|+|++|.+++ .+|..+ ..+++|+.|++++|.+++.
T Consensus 90 n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~-~~l~~L~~L~Ls~n~l~~~ 168 (606)
T 3vq2_A 90 NPIQSFSPGSFSGLTSLENLVAVETKLASLESFPIGQLITLKKLNVAHNFIHSCKLPAYF-SNLTNLVHVDLSYNYIQTI 168 (606)
T ss_dssp CCCCCCCTTSSTTCTTCCEEECTTSCCCCSSSSCCTTCTTCCEEECCSSCCCCCCCCGGG-GTCTTCCEEECCSSCCCEE
T ss_pred CcccccChhhcCCcccCCEEEccCCccccccccccCCCCCCCEEeCCCCcccceechHhH-hhcCCCCEEEccCCcceec
Confidence 99998889999999999999999999998888999999999999999999984 456554 4899999999999998876
Q ss_pred CCccCCCC------------------------------------------------------------------------
Q 005045 171 IPVSLSNA------------------------------------------------------------------------ 178 (717)
Q Consensus 171 ~~~~~~~l------------------------------------------------------------------------ 178 (717)
.+..+..+
T Consensus 169 ~~~~~~~l~~L~~~l~~L~l~~n~l~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~l~ 248 (606)
T 3vq2_A 169 TVNDLQFLRENPQVNLSLDMSLNPIDFIQDQAFQGIKLHELTLRGNFNSSNIMKTCLQNLAGLHVHRLILGEFKDERNLE 248 (606)
T ss_dssp CTTTTHHHHHCTTCCCEEECTTCCCCEECTTTTTTCEEEEEEEESCCSCHHHHHHHHHTTTTCEEEEEEEECCTTSCCCS
T ss_pred ChhhhhhhhccccccceeeccCCCcceeCcccccCceeeeeeccCCccchhHHHHHhccccccccccccccccccCCccc
Confidence 55433222
Q ss_pred ----------------------------------------------------------CCCCEEeccCccccccCCC---
Q 005045 179 ----------------------------------------------------------SNLQVLDFAENGLTGTIPG--- 197 (717)
Q Consensus 179 ----------------------------------------------------------~~L~~L~l~~N~l~~~~~~--- 197 (717)
++|++|++++|.++ .+|.
T Consensus 249 ~~~~~~~~~l~~l~l~~l~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~l~~l~~~~~L~~L~l~~n~l~-~lp~~~l 327 (606)
T 3vq2_A 249 IFEPSIMEGLCDVTIDEFRLTYTNDFSDDIVKFHCLANVSAMSLAGVSIKYLEDVPKHFKWQSLSIIRCQLK-QFPTLDL 327 (606)
T ss_dssp CCCGGGGTTGGGSEEEEEEECCCTTCCGGGGSCGGGTTCSEEEEESCCCCCCCCCCTTCCCSEEEEESCCCS-SCCCCCC
T ss_pred ccChHHhhhhhhccHhheeccccccccccccccccCCCCCEEEecCccchhhhhccccccCCEEEcccccCc-ccccCCC
Confidence 23444444444432 2221
Q ss_pred -----------------CccCCCCCCeeeccccccCCcccCchhhhhhhccCCCCCEEEeecCcccCcCchhhhhccccc
Q 005045 198 -----------------NFGSLKDLVRLNFDQNELGSREIGDLNFLKFLANCTSLEVLGLARNSFGGEMPISIANLSTHL 260 (717)
Q Consensus 198 -----------------~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~~~~L 260 (717)
.+..+++|+.|++++|.++..... +..+..+++|++|++++|.++ .+|..+..+ ++|
T Consensus 328 ~~L~~L~l~~n~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~----~~~~~~~~~L~~L~L~~n~l~-~~~~~~~~l-~~L 401 (606)
T 3vq2_A 328 PFLKSLTLTMNKGSISFKKVALPSLSYLDLSRNALSFSGCC----SYSDLGTNSLRHLDLSFNGAI-IMSANFMGL-EEL 401 (606)
T ss_dssp SSCCEEEEESCSSCEECCCCCCTTCCEEECCSSCEEEEEEC----CHHHHCCSCCCEEECCSCSEE-EECCCCTTC-TTC
T ss_pred CccceeeccCCcCccchhhccCCCCCEEECcCCccCCCcch----hhhhccCCcccEeECCCCccc-cchhhccCC-CCC
Confidence 234567788888888888765311 456889999999999999999 677777777 599
Q ss_pred cEEecCCCccCCCCC-ccccCCCCCCEEEccCCcCccccchhhhcCCCCCeEEcccCcCCC-CCCcccccccccceeecc
Q 005045 261 RRLTMGENLMHGNIP-VGIGNLVNLNLLGLEGNNLSGSVPEVIGRLNKLEGLGLNVNKFSG-LIPSSLGNLTILTRLWME 338 (717)
Q Consensus 261 ~~L~l~~N~l~~~~~-~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~-~~~~~~~~l~~L~~L~L~ 338 (717)
+.|++++|.+.+..+ ..|.++++|+.|++++|++++..|..+.++++|++|++++|++++ ..|..|..+++|+.|+|+
T Consensus 402 ~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls 481 (606)
T 3vq2_A 402 QHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYTNTKIDFDGIFLGLTSLNTLKMAGNSFKDNTLSNVFANTTNLTFLDLS 481 (606)
T ss_dssp CEEECTTSEEESTTTTTTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECT
T ss_pred CeeECCCCccCCccChhhhhccccCCEEECcCCCCCccchhhhcCCCCCCEEECCCCcCCCcchHHhhccCCCCCEEECC
Confidence 999999999998877 689999999999999999998899999999999999999999997 478899999999999999
Q ss_pred cccccccCCcCccCcCCCceEEeecccCCCCCCcccc
Q 005045 339 ENRLEGSIPPSLGNCQKLLVLNLSSNDLNGTIPKEVR 375 (717)
Q Consensus 339 ~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~ 375 (717)
+|++++..|..|..+++|+.|++++|++++.+|..+.
T Consensus 482 ~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~ 518 (606)
T 3vq2_A 482 KCQLEQISWGVFDTLHRLQLLNMSHNNLLFLDSSHYN 518 (606)
T ss_dssp TSCCCEECTTTTTTCTTCCEEECCSSCCSCEEGGGTT
T ss_pred CCcCCccChhhhcccccCCEEECCCCcCCCcCHHHcc
Confidence 9999988999999999999999999999987777654
No 35
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=100.00 E-value=3.7e-41 Score=375.61 Aligned_cols=351 Identities=21% Similarity=0.267 Sum_probs=278.6
Q ss_pred cceeeCCcc--eecEEEcCCCcCcCCCCcCCcCCCCCCEEECCCCcccccCCcCCCCCCCCCEEEccCccccccCCcccc
Q 005045 2 ELIMIPEHL--MTQDLNLTYNYLSGKIPTNLSHCTELRSFEASVNDFVGQIPNQLSSLTKLEIIGLGGSNLTGNVPAWIG 79 (717)
Q Consensus 2 ~l~~~p~~~--~~~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~ 79 (717)
.++.+|... .+++|+|++|++++..|..|..+++|++|+|++|++++..|..|.++++|++|+|++|+|+ .+|..
T Consensus 11 ~l~~ip~~~~~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~-~lp~~-- 87 (520)
T 2z7x_B 11 GLIHVPKDLSQKTTILNISQNYISELWTSDILSLSKLRILIISHNRIQYLDISVFKFNQELEYLDLSHNKLV-KISCH-- 87 (520)
T ss_dssp CCSSCCCSCCTTCSEEECCSSCCCCCCHHHHTTCTTCCEEECCSSCCCEEEGGGGTTCTTCCEEECCSSCCC-EEECC--
T ss_pred CcccccccccccccEEECCCCcccccChhhccccccccEEecCCCccCCcChHHhhcccCCCEEecCCCcee-ecCcc--
Confidence 356677655 7899999999999877788999999999999999999888888999999999999999999 56665
Q ss_pred CCCCCCEEeccCCcCcc-cCChhhhccCCCCeEeccCCCCCCCCCccccCCCCc--cEEEcccCcc--cccCCccccc--
Q 005045 80 NFSSLKALSLAWNNLRG-SIPNELGQLSGLGFFTLYGNFISGIIPSSIYNISSI--YYFSVTQNQL--HGQLPTDVGL-- 152 (717)
Q Consensus 80 ~l~~L~~L~L~~n~l~~-~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L--~~L~L~~N~l--~~~l~~~~~~-- 152 (717)
.+++|++|+|++|++++ ..|..|+++++|++|+|++|.+++ ..|..+++| +.|++++|.+ .+..|..+..
T Consensus 88 ~l~~L~~L~L~~N~l~~~~~p~~~~~l~~L~~L~L~~n~l~~---~~~~~l~~L~L~~L~l~~n~l~~~~~~~~~l~~l~ 164 (520)
T 2z7x_B 88 PTVNLKHLDLSFNAFDALPICKEFGNMSQLKFLGLSTTHLEK---SSVLPIAHLNISKVLLVLGETYGEKEDPEGLQDFN 164 (520)
T ss_dssp CCCCCSEEECCSSCCSSCCCCGGGGGCTTCCEEEEEESSCCG---GGGGGGTTSCEEEEEEEECTTTTSSCCTTTTTTCC
T ss_pred ccCCccEEeccCCccccccchhhhccCCcceEEEecCcccch---hhccccccceeeEEEeecccccccccccccccccc
Confidence 78999999999999986 367899999999999999999985 567777777 9999999988 4444433321
Q ss_pred -----------------------C--------------------------------------------------------
Q 005045 153 -----------------------T-------------------------------------------------------- 153 (717)
Q Consensus 153 -----------------------~-------------------------------------------------------- 153 (717)
.
T Consensus 165 ~~~l~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~~~~~~ 244 (520)
T 2z7x_B 165 TESLHIVFPTNKEFHFILDVSVKTVANLELSNIKCVLEDNKCSYFLSILAKLQTNPKLSNLTLNNIETTWNSFIRILQLV 244 (520)
T ss_dssp EEEEEEECCSSSCCCCCCCCCCTTCSEEEECCEEECCSTTTTHHHHHHHHGGGGCTTCCEEEEEEEEEEHHHHHHHHHHH
T ss_pred cceEEEEeccCcchhhhhhhhhhcccceeeccccccccccccceeecchhhhccccchhhccccccccCHHHHHHHHHHh
Confidence 1
Q ss_pred -CCCcceeecccccccccCCccC-----CCCCCCCEEeccCccccccCC-------------------------CC-ccC
Q 005045 154 -LPNLKIFAGAVNYFTGSIPVSL-----SNASNLQVLDFAENGLTGTIP-------------------------GN-FGS 201 (717)
Q Consensus 154 -l~~L~~L~l~~n~l~~~~~~~~-----~~l~~L~~L~l~~N~l~~~~~-------------------------~~-~~~ 201 (717)
.++|+.|++++|.+.+.+|..+ ..+++|+.+++++|.+. +| .. +..
T Consensus 245 ~~~~L~~L~l~~n~l~~~~p~~~~~~~~~~l~~L~~l~l~~n~~~--~p~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~ 322 (520)
T 2z7x_B 245 WHTTVWYFSISNVKLQGQLDFRDFDYSGTSLKALSIHQVVSDVFG--FPQSYIYEIFSNMNIKNFTVSGTRMVHMLCPSK 322 (520)
T ss_dssp HTSSCSEEEEEEEEEESCCCCCCCCCCSCCCCEEEEEEEEECCCC--SCTHHHHHHHHTCCCSEEEEESSCCCCCCCCSS
T ss_pred hhCcccEEEeecccccCccccchhhcccccCceeEecccccccee--cchhhhhcccccCceeEEEcCCCccccccchhh
Confidence 1256667777777776677766 56655555555555541 12 01 257
Q ss_pred CCCCCeeeccccccCCcccCchhhhhhhccCCCCCEEEeecCcccC--cCchhhhhccccccEEecCCCccCCCCCc-cc
Q 005045 202 LKDLVRLNFDQNELGSREIGDLNFLKFLANCTSLEVLGLARNSFGG--EMPISIANLSTHLRRLTMGENLMHGNIPV-GI 278 (717)
Q Consensus 202 l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~--~~p~~~~~~~~~L~~L~l~~N~l~~~~~~-~~ 278 (717)
+++|++|++++|+++... +..+..+++|++|++++|.+++ .+|..+..+ ++|++|++++|.+.+.+|. .+
T Consensus 323 l~~L~~L~Ls~n~l~~~~------~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~l-~~L~~L~Ls~N~l~~~l~~~~~ 395 (520)
T 2z7x_B 323 ISPFLHLDFSNNLLTDTV------FENCGHLTELETLILQMNQLKELSKIAEMTTQM-KSLQQLDISQNSVSYDEKKGDC 395 (520)
T ss_dssp CCCCCEEECCSSCCCTTT------TTTCCCCSSCCEEECCSSCCCBHHHHHHHHTTC-TTCCEEECCSSCCBCCGGGCSC
T ss_pred CCcccEEEeECCccChhh------hhhhccCCCCCEEEccCCccCccccchHHHhhC-CCCCEEECCCCcCCcccccchh
Confidence 788999999999888755 5678889999999999999985 455667777 5899999999999874554 48
Q ss_pred cCCCCCCEEEccCCcCccccchhhhcCCCCCeEEcccCcCCCCCCcccccccccceeecccccccccCCcC-ccCcCCCc
Q 005045 279 GNLVNLNLLGLEGNNLSGSVPEVIGRLNKLEGLGLNVNKFSGLIPSSLGNLTILTRLWMEENRLEGSIPPS-LGNCQKLL 357 (717)
Q Consensus 279 ~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~-~~~l~~L~ 357 (717)
..+++|+.|++++|++++..|..+. ++|+.|+|++|+++ .+|..+..+++|+.|+|++|+++ .+|.. +..+++|+
T Consensus 396 ~~l~~L~~L~Ls~N~l~~~~~~~l~--~~L~~L~Ls~N~l~-~ip~~~~~l~~L~~L~L~~N~l~-~l~~~~~~~l~~L~ 471 (520)
T 2z7x_B 396 SWTKSLLSLNMSSNILTDTIFRCLP--PRIKVLDLHSNKIK-SIPKQVVKLEALQELNVASNQLK-SVPDGIFDRLTSLQ 471 (520)
T ss_dssp CCCTTCCEEECCSSCCCGGGGGSCC--TTCCEEECCSSCCC-CCCGGGGGCTTCCEEECCSSCCC-CCCTTTTTTCTTCC
T ss_pred ccCccCCEEECcCCCCCcchhhhhc--ccCCEEECCCCccc-ccchhhhcCCCCCEEECCCCcCC-ccCHHHhccCCccc
Confidence 8889999999999999877776554 68999999999998 55776779999999999999998 56655 88899999
Q ss_pred eEEeecccCCCCCC
Q 005045 358 VLNLSSNDLNGTIP 371 (717)
Q Consensus 358 ~L~l~~N~l~~~~p 371 (717)
.|++++|++++.++
T Consensus 472 ~L~l~~N~~~c~c~ 485 (520)
T 2z7x_B 472 KIWLHTNPWDCSCP 485 (520)
T ss_dssp EEECCSSCBCCCHH
T ss_pred EEECcCCCCcccCC
Confidence 99999999998776
No 36
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=100.00 E-value=5e-41 Score=387.20 Aligned_cols=363 Identities=20% Similarity=0.224 Sum_probs=303.0
Q ss_pred cceeeCCcc--eecEEEcCCCcCcCCCCcCCcCCCCCCEEECCCCcccccCCcCCCCCCCCCEEEccCccccccCCcccc
Q 005045 2 ELIMIPEHL--MTQDLNLTYNYLSGKIPTNLSHCTELRSFEASVNDFVGQIPNQLSSLTKLEIIGLGGSNLTGNVPAWIG 79 (717)
Q Consensus 2 ~l~~~p~~~--~~~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~ 79 (717)
.++.+|..+ .+++|+|++|++++..+..|.++++|++|+|++|.+++..|..|.++++|++|+|++|.+++..+..|.
T Consensus 15 ~L~~ip~~~~~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~ 94 (680)
T 1ziw_A 15 KLTQVPDDLPTNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNELSQLSDKTFA 94 (680)
T ss_dssp CCSSCCSCSCTTCSEEECCSSCCCCCCGGGGGGGTTCSEEECCSSCCCCCCTTHHHHCTTCCEEECCSSCCCCCCTTTTT
T ss_pred CccccccccCCCCcEEECCCCCCCCcCHHHHhCCCcCcEEECCCCccCccCHHHHhcccCcCEEECCCCccCccChhhhc
Confidence 567788766 899999999999988888899999999999999999988899999999999999999999965556799
Q ss_pred CCCCCCEEeccCCcCcccCChhhhccCCCCeEeccCCCCCCCCCccccCCCCccEEEcccCcccccCCcccc--cCCCCc
Q 005045 80 NFSSLKALSLAWNNLRGSIPNELGQLSGLGFFTLYGNFISGIIPSSIYNISSIYYFSVTQNQLHGQLPTDVG--LTLPNL 157 (717)
Q Consensus 80 ~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~~l~~~~~--~~l~~L 157 (717)
++++|++|+|++|++++..|..|.++++|++|+|++|.+++..+..|.++++|++|++++|.++ .++...+ ..+++|
T Consensus 95 ~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~-~~~~~~~~~~~~~~L 173 (680)
T 1ziw_A 95 FCTNLTELHLMSNSIQKIKNNPFVKQKNLITLDLSHNGLSSTKLGTQVQLENLQELLLSNNKIQ-ALKSEELDIFANSSL 173 (680)
T ss_dssp TCTTCSEEECCSSCCCCCCSCTTTTCTTCCEEECCSSCCSCCCCCSSSCCTTCCEEECCSSCCC-CBCHHHHGGGTTCEE
T ss_pred cCCCCCEEECCCCccCccChhHccccCCCCEEECCCCcccccCchhhcccccCCEEEccCCccc-ccCHHHhhccccccc
Confidence 9999999999999999888889999999999999999999999999999999999999999998 5554433 256899
Q ss_pred ceeecccccccccCCccCCCC---------------------------CCCCEEeccCccccccCCCCccCCCC--CCee
Q 005045 158 KIFAGAVNYFTGSIPVSLSNA---------------------------SNLQVLDFAENGLTGTIPGNFGSLKD--LVRL 208 (717)
Q Consensus 158 ~~L~l~~n~l~~~~~~~~~~l---------------------------~~L~~L~l~~N~l~~~~~~~~~~l~~--L~~L 208 (717)
+.|++++|.+.+..|..+..+ ++|+.|++++|.+++..|..|..++. |+.|
T Consensus 174 ~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~l~~~~L~~L~L~~n~l~~~~~~~~~~l~~~~L~~L 253 (680)
T 1ziw_A 174 KKLELSSNQIKEFSPGCFHAIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQLSTTSNTTFLGLKWTNLTML 253 (680)
T ss_dssp SEEECTTCCCCCBCTTGGGGSSEECEEECTTCCCHHHHHHHHHHHHTTSCCCEEECTTSCCCEECTTTTGGGGGSCCCEE
T ss_pred cEEECCCCcccccChhhhhhhhhhhhhhccccccChhhHHHHHHHhhhccccEEEccCCcccccChhHhhccCcCCCCEE
Confidence 999999999998888766544 56788888888888888888888755 9999
Q ss_pred eccccccCCcccCchhhhhhhccCCCCCEEEeecCcccCcCchhhhhccccccEEecCCCccCC-----CCC----cccc
Q 005045 209 NFDQNELGSREIGDLNFLKFLANCTSLEVLGLARNSFGGEMPISIANLSTHLRRLTMGENLMHG-----NIP----VGIG 279 (717)
Q Consensus 209 ~l~~N~l~~~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~~~~L~~L~l~~N~l~~-----~~~----~~~~ 279 (717)
++++|.++.+. +..|..+++|++|++++|.+++..|..+..+ ++|+.|++++|...+ .+| ..|.
T Consensus 254 ~Ls~n~l~~~~------~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l-~~L~~L~L~~~~~~~~~~~~~lp~i~~~~~~ 326 (680)
T 1ziw_A 254 DLSYNNLNVVG------NDSFAWLPQLEYFFLEYNNIQHLFSHSLHGL-FNVRYLNLKRSFTKQSISLASLPKIDDFSFQ 326 (680)
T ss_dssp ECTTSCCCEEC------TTTTTTCTTCCEEECCSCCBSEECTTTTTTC-TTCCEEECTTCBCCC------CCEECTTTTT
T ss_pred ECCCCCcCccC------cccccCcccccEeeCCCCccCccChhhhcCC-CCccEEeccchhhhcccccccccccChhhcc
Confidence 99999998876 6678889999999999999997777777777 588888888875542 122 2677
Q ss_pred CCCCCCEEEccCCcCccccchhhhcCCCCCeEEcccCcCC--CCCCcccccc--cccceeecccccccccCCcCccCcCC
Q 005045 280 NLVNLNLLGLEGNNLSGSVPEVIGRLNKLEGLGLNVNKFS--GLIPSSLGNL--TILTRLWMEENRLEGSIPPSLGNCQK 355 (717)
Q Consensus 280 ~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~--~~~~~~~~~l--~~L~~L~L~~N~l~~~~p~~~~~l~~ 355 (717)
.+++|++|++++|++++..+..|.++++|++|++++|.++ .+....|..+ ++|+.|+|++|++++..|..|..+++
T Consensus 327 ~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~~~~~~l~~~~f~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~ 406 (680)
T 1ziw_A 327 WLKCLEHLNMEDNDIPGIKSNMFTGLINLKYLSLSNSFTSLRTLTNETFVSLAHSPLHILNLTKNKISKIESDAFSWLGH 406 (680)
T ss_dssp TCTTCCEEECCSCCBCCCCTTTTTTCTTCCEEECTTCBSCCCEECTTTTGGGTTSCCCEEECTTSCCCEECTTTTTTCTT
T ss_pred cCCCCCEEECCCCccCCCChhHhccccCCcEEECCCCchhhhhcchhhhcccccCcCceEECCCCCCCeEChhhhhCCCC
Confidence 8888888888888888877778888888888888888743 2233344433 47888888888888777778888888
Q ss_pred CceEEeecccCCCCCCc
Q 005045 356 LLVLNLSSNDLNGTIPK 372 (717)
Q Consensus 356 L~~L~l~~N~l~~~~p~ 372 (717)
|+.|++++|.+++.+|.
T Consensus 407 L~~L~L~~N~l~~~~~~ 423 (680)
T 1ziw_A 407 LEVLDLGLNEIGQELTG 423 (680)
T ss_dssp CCEEECCSSCCEEECCS
T ss_pred CCEEeCCCCcCccccCc
Confidence 88888888888766664
No 37
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=100.00 E-value=7.5e-41 Score=382.95 Aligned_cols=364 Identities=22% Similarity=0.249 Sum_probs=297.4
Q ss_pred CcceeeCCcc--eecEEEcCCCcCcCCCCcCCcCCCCCCEEECCCCcccccCCcCCCCCCCCCEEEccCccccccCCccc
Q 005045 1 MELIMIPEHL--MTQDLNLTYNYLSGKIPTNLSHCTELRSFEASVNDFVGQIPNQLSSLTKLEIIGLGGSNLTGNVPAWI 78 (717)
Q Consensus 1 ~~l~~~p~~~--~~~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~ 78 (717)
+.|+.||..+ .+++|+|++|+|+++.|.+|.++++|++|+|++|+|+++.|.+|.++++|++|+|++|+|++..+.+|
T Consensus 41 ~~l~~vP~~lp~~~~~LdLs~N~i~~l~~~~f~~l~~L~~L~Ls~N~i~~i~~~~f~~L~~L~~L~Ls~N~l~~l~~~~f 120 (635)
T 4g8a_A 41 LNFYKIPDNLPFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAF 120 (635)
T ss_dssp SCCSSCCSSSCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECGGGG
T ss_pred CCcCccCCCCCcCCCEEEeeCCCCCCCCHHHHhCCCCCCEEECCCCcCCCcChhHhcCCCCCCEEEccCCcCCCCCHHHh
Confidence 3678899877 89999999999998888899999999999999999998888899999999999999999997777889
Q ss_pred cCCCCCCEEeccCCcCcccCChhhhccCCCCeEeccCCCCCCC-CCccccCCCCccEEEcccCcccccCCcccccC----
Q 005045 79 GNFSSLKALSLAWNNLRGSIPNELGQLSGLGFFTLYGNFISGI-IPSSIYNISSIYYFSVTQNQLHGQLPTDVGLT---- 153 (717)
Q Consensus 79 ~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~i~~~-~~~~~~~l~~L~~L~L~~N~l~~~l~~~~~~~---- 153 (717)
.++++|++|+|++|+|++..+..|+++++|++|+|++|.+++. .|..+..+++|++|+|++|++++..+.. +..
T Consensus 121 ~~L~~L~~L~Ls~N~l~~l~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~-l~~L~~l 199 (635)
T 4g8a_A 121 SGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTD-LRVLHQM 199 (635)
T ss_dssp TTCTTCCEEECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGGG-GHHHHTC
T ss_pred cCCCCCCEEECCCCcCCCCChhhhhcCcccCeeccccCccccCCCchhhccchhhhhhcccCcccccccccc-ccchhhh
Confidence 9999999999999999977778899999999999999999864 5788999999999999999987322211 100
Q ss_pred --------------------------------------------------------------------------------
Q 005045 154 -------------------------------------------------------------------------------- 153 (717)
Q Consensus 154 -------------------------------------------------------------------------------- 153 (717)
T Consensus 200 ~~~~~~~~ls~n~l~~i~~~~~~~~~~~~l~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~~l~~~~~~~~~~~~ 279 (635)
T 4g8a_A 200 PLLNLSLDLSLNPMNFIQPGAFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLC 279 (635)
T ss_dssp TTCCCEEECTTCCCCEECTTTTTTCEEEEEEEESCCSSHHHHHHHHHTTTTCEEEEEEEECCTTSCCCSCCCTTTTGGGG
T ss_pred hhhhhhhhcccCcccccCcccccchhhhhhhhhcccccccccchhhcCCccccccccccccccccccccccccccccccc
Confidence
Q ss_pred -----------------------------------------------CCCcceeecccccccccCCc-------------
Q 005045 154 -----------------------------------------------LPNLKIFAGAVNYFTGSIPV------------- 173 (717)
Q Consensus 154 -----------------------------------------------l~~L~~L~l~~n~l~~~~~~------------- 173 (717)
..+|+.|++.+|.+....+.
T Consensus 280 ~l~~~~l~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~L~~l~l~~n 359 (635)
T 4g8a_A 280 NLTIEEFRLAYLDYYLDGIIDLFNCLTNVSSFSLVSVTIERVKDFSYNFGWQHLELVNCKFGQFPTLKLKSLKRLTFTSN 359 (635)
T ss_dssp GSEEEEEEEECCCSCEEECTTTTGGGTTCSEEEEESCEEEECGGGGSCCCCSEEEEESCEESSCCCCBCTTCCEEEEESC
T ss_pred chhhhhhhhhhhcccccchhhhhhhhcccccccccccccccccccccchhhhhhhcccccccCcCcccchhhhhcccccc
Confidence 11233333444433322111
Q ss_pred ------cCCCCCCCCEEeccCcccccc-------------------------CCCCccCCCCCCeeeccccccCCcccCc
Q 005045 174 ------SLSNASNLQVLDFAENGLTGT-------------------------IPGNFGSLKDLVRLNFDQNELGSREIGD 222 (717)
Q Consensus 174 ------~~~~l~~L~~L~l~~N~l~~~-------------------------~~~~~~~l~~L~~L~l~~N~l~~~~~~~ 222 (717)
....+++|+.|++++|.+... .+..+..+++|+.++++.|+......
T Consensus 360 ~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~~~~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~-- 437 (635)
T 4g8a_A 360 KGGNAFSEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTISLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQMSE-- 437 (635)
T ss_dssp CSCCBCCCCBCTTCCEEECCSSCCBEEEECCHHHHSCSCCCEEECCSCSEEEECSCCTTCTTCCEEECTTSEEESTTS--
T ss_pred cCCCCcccccccccccchhhccccccccccccchhhhhhhhhhhccccccccccccccccccccchhhhhcccccccc--
Confidence 123467788888888877532 22345556666777776665554331
Q ss_pred hhhhhhhccCCCCCEEEeecCcccCcCchhhhhccccccEEecCCCcc-CCCCCccccCCCCCCEEEccCCcCccccchh
Q 005045 223 LNFLKFLANCTSLEVLGLARNSFGGEMPISIANLSTHLRRLTMGENLM-HGNIPVGIGNLVNLNLLGLEGNNLSGSVPEV 301 (717)
Q Consensus 223 ~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~~~~L~~L~l~~N~l-~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~ 301 (717)
...+.++++++.++++.|.+.+..+..+... +.|+.|++++|.+ .+..|..|..+++|++|+|++|+|++..|..
T Consensus 438 ---~~~~~~l~~l~~l~ls~n~l~~~~~~~~~~~-~~L~~L~Ls~N~~~~~~~~~~~~~l~~L~~L~Ls~N~L~~l~~~~ 513 (635)
T 4g8a_A 438 ---FSVFLSLRNLIYLDISHTHTRVAFNGIFNGL-SSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTA 513 (635)
T ss_dssp ---SCTTTTCTTCCEEECTTSCCEECCTTTTTTC-TTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTT
T ss_pred ---ccccccccccccccccccccccccccccccc-hhhhhhhhhhcccccccCchhhhhccccCEEECCCCccCCcChHH
Confidence 3457788999999999999996666666666 6999999999974 4457888999999999999999999888999
Q ss_pred hhcCCCCCeEEcccCcCCCCCCcccccccccceeecccccccccCCcCccCc-CCCceEEeecccCCCCCC
Q 005045 302 IGRLNKLEGLGLNVNKFSGLIPSSLGNLTILTRLWMEENRLEGSIPPSLGNC-QKLLVLNLSSNDLNGTIP 371 (717)
Q Consensus 302 ~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l-~~L~~L~l~~N~l~~~~p 371 (717)
|.++++|++|+|++|+|+++.+..|.++++|+.|+|++|+|++..|..+..+ ++|+.|+|++|||++.+.
T Consensus 514 f~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~~L~~L~L~~Np~~C~C~ 584 (635)
T 4g8a_A 514 FNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFACTCE 584 (635)
T ss_dssp TTTCTTCCEEECTTSCCCBCCCGGGTTCTTCCEEECTTSCCCBCCSSCTTCCCTTCCEEECTTCCBCCSGG
T ss_pred HcCCCCCCEEECCCCcCCCCChhHHhCCCCCCEEECCCCcCCCCCHHHHHhhhCcCCEEEeeCCCCcccCC
Confidence 9999999999999999999999999999999999999999998889999988 689999999999998765
No 38
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=100.00 E-value=7.3e-41 Score=393.43 Aligned_cols=354 Identities=23% Similarity=0.221 Sum_probs=203.7
Q ss_pred eecEEEcCCCcCcCCC-CcCCcCCCCCCEEECCCCcccccCCcCCCCCCCCCEEEccCccccccCCcc--ccCCCCCCEE
Q 005045 11 MTQDLNLTYNYLSGKI-PTNLSHCTELRSFEASVNDFVGQIPNQLSSLTKLEIIGLGGSNLTGNVPAW--IGNFSSLKAL 87 (717)
Q Consensus 11 ~~~~L~L~~n~l~~~~-~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~--~~~l~~L~~L 87 (717)
+|++|+|++|...+.+ |.+|+++++|++|+|++|.+++..|..|.++++|++|+|++|.+++.+|.. |.++++|++|
T Consensus 49 ~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~~L 128 (844)
T 3j0a_A 49 QLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSSKIYFLHPDAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRL 128 (844)
T ss_dssp SCSEEEECTTCCCCEECTTTTSSCTTCCEEECTTCCCCEECTTSSCSCSSCCCEECTTCCCSSCCSTTCCCSSCSSCCEE
T ss_pred cCeEEeCCCCCCccccCHHHhcCCCCCCEEECCCCcCcccCHhHccCCcccCEeeCcCCCCCcccccCccccccCCCCEE
Confidence 5666666666443333 556666666666666666666555666666666666666666666544433 5666666666
Q ss_pred eccCCcCcccCC-hhhhccCCCCeEeccCCCCCCCCCccccCC--------------------------CC------ccE
Q 005045 88 SLAWNNLRGSIP-NELGQLSGLGFFTLYGNFISGIIPSSIYNI--------------------------SS------IYY 134 (717)
Q Consensus 88 ~L~~n~l~~~~~-~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l--------------------------~~------L~~ 134 (717)
+|++|.+++..+ ..|.++++|++|+|++|.+++..+..|..+ ++ |+.
T Consensus 129 ~Ls~N~l~~~~~~~~~~~L~~L~~L~Ls~N~i~~~~~~~l~~l~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~L~~ 208 (844)
T 3j0a_A 129 DLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLVCEHELEPLQGKTLSFFSLAANSLYSRVSVDWGKCMNPFRNMVLEI 208 (844)
T ss_dssp EEESCCCCCCCCCGGGGTCSSCCEEEEESSCCCCCCSGGGHHHHHCSSCCCEECCSBSCCCCCCCCCSSSCTTTTCCBSE
T ss_pred ECCCCcccccccchhHhhCCCCCEEECCCCcCCeeCHHHcccccCCccceEECCCCccccccccchhhcCCccccCceeE
Confidence 666666654433 356666666666666666654444433222 11 444
Q ss_pred EEcccCcccc-------------------------------------------------------------cCCcccccC
Q 005045 135 FSVTQNQLHG-------------------------------------------------------------QLPTDVGLT 153 (717)
Q Consensus 135 L~L~~N~l~~-------------------------------------------------------------~l~~~~~~~ 153 (717)
|+|++|.+++ .++...+..
T Consensus 209 L~Ls~n~l~~~~~~~~~~~l~~~~l~~L~l~~~~~~~~~~~~~l~~~~~~~f~~l~~~~L~~L~Ls~n~l~~~~~~~~~~ 288 (844)
T 3j0a_A 209 LDVSGNGWTVDITGNFSNAISKSQAFSLILAHHIMGAGFGFHNIKDPDQNTFAGLARSSVRHLDLSHGFVFSLNSRVFET 288 (844)
T ss_dssp EBCSSCCSSTTTTSGGGGTSCSCCBSEEECCSSCCBCSSSCSSSTTGGGTTTTTTTTSCCCEEECTTCCCCEECSCCSSS
T ss_pred EecCCCcCchhHHHHHHhhcCcccccceecccccccccccccccCCCChhhhhccccCCccEEECCCCcccccChhhhhc
Confidence 4444443322 222233344
Q ss_pred CCCcceeecccccccccCCccCCCCCCCCEEeccCccccccCCCCccCCCCCCeeeccccccCCcccCchhhhhhhccCC
Q 005045 154 LPNLKIFAGAVNYFTGSIPVSLSNASNLQVLDFAENGLTGTIPGNFGSLKDLVRLNFDQNELGSREIGDLNFLKFLANCT 233 (717)
Q Consensus 154 l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~l~ 233 (717)
+++|+.|++++|.+.+..+..|.++++|++|+|++|.+++..|..|..+++|+.|++++|.+..++ +..|.+++
T Consensus 289 l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~------~~~~~~l~ 362 (844)
T 3j0a_A 289 LKDLKVLNLAYNKINKIADEAFYGLDNLQVLNLSYNLLGELYSSNFYGLPKVAYIDLQKNHIAIIQ------DQTFKFLE 362 (844)
T ss_dssp CCCCCEEEEESCCCCEECTTTTTTCSSCCEEEEESCCCSCCCSCSCSSCTTCCEEECCSCCCCCCC------SSCSCSCC
T ss_pred CCCCCEEECCCCcCCCCChHHhcCCCCCCEEECCCCCCCccCHHHhcCCCCCCEEECCCCCCCccC------hhhhcCCC
Confidence 555555555555555555555555555555555555555555555555555555555555555544 33455555
Q ss_pred CCCEEEeecCcccCcCch-----------------------------------------hhhhccccccEEecCCCccCC
Q 005045 234 SLEVLGLARNSFGGEMPI-----------------------------------------SIANLSTHLRRLTMGENLMHG 272 (717)
Q Consensus 234 ~L~~L~L~~N~l~~~~p~-----------------------------------------~~~~~~~~L~~L~l~~N~l~~ 272 (717)
+|+.|+|++|.+++ ++. .+..+ ++|+.|++++|.+++
T Consensus 363 ~L~~L~Ls~N~l~~-i~~~~~L~~L~l~~N~l~~l~~~~~~l~~L~ls~N~l~~l~~~~~~~~l-~~L~~L~Ls~N~l~~ 440 (844)
T 3j0a_A 363 KLQTLDLRDNALTT-IHFIPSIPDIFLSGNKLVTLPKINLTANLIHLSENRLENLDILYFLLRV-PHLQILILNQNRFSS 440 (844)
T ss_dssp CCCEEEEETCCSCC-CSSCCSCSEEEEESCCCCCCCCCCTTCCEEECCSCCCCSSTTHHHHTTC-TTCCEEEEESCCCCC
T ss_pred CCCEEECCCCCCCc-ccCCCCcchhccCCCCcccccccccccceeecccCccccCchhhhhhcC-CccceeeCCCCcccc
Confidence 66666665555542 110 01122 345555555555543
Q ss_pred CCCc-cccCCCCCCEEEccCCcCc-----cccchhhhcCCCCCeEEcccCcCCCCCCcccccccccceeecccccccccC
Q 005045 273 NIPV-GIGNLVNLNLLGLEGNNLS-----GSVPEVIGRLNKLEGLGLNVNKFSGLIPSSLGNLTILTRLWMEENRLEGSI 346 (717)
Q Consensus 273 ~~~~-~~~~l~~L~~L~L~~N~l~-----~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~ 346 (717)
..+. .+..+++|+.|+|++|.++ +..+..|.++++|+.|+|++|++++.+|..|.++++|+.|+|++|++++..
T Consensus 441 ~~~~~~~~~~~~L~~L~Ls~N~l~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~l~ 520 (844)
T 3j0a_A 441 CSGDQTPSENPSLEQLFLGENMLQLAWETELCWDVFEGLSHLQVLYLNHNYLNSLPPGVFSHLTALRGLSLNSNRLTVLS 520 (844)
T ss_dssp CCSSSSSCSCTTCCBCEEESCCCSSSCCSCCCSSCSSCBCCEECCCCCHHHHTTCCTTSSSSCCSCSEEEEESCCCSSCC
T ss_pred cccccccccCCccccccCCCCccccccccccchhhhcCcccccEEECCCCcccccChhHccchhhhheeECCCCCCCccC
Confidence 2221 2334455555555555554 223345677788888888888888888888888888888888888888655
Q ss_pred CcCccCcCCCceEEeecccCCCCCCccc
Q 005045 347 PPSLGNCQKLLVLNLSSNDLNGTIPKEV 374 (717)
Q Consensus 347 p~~~~~l~~L~~L~l~~N~l~~~~p~~~ 374 (717)
|..+. ++|+.|++++|.|++..|...
T Consensus 521 ~~~~~--~~L~~L~Ls~N~l~~~~~~~~ 546 (844)
T 3j0a_A 521 HNDLP--ANLEILDISRNQLLAPNPDVF 546 (844)
T ss_dssp CCCCC--SCCCEEEEEEECCCCCCSCCC
T ss_pred hhhhh--ccccEEECCCCcCCCCChhHh
Confidence 55555 678888888888877666543
No 39
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=100.00 E-value=1.1e-40 Score=365.54 Aligned_cols=351 Identities=17% Similarity=0.167 Sum_probs=306.5
Q ss_pred eecEEEcCCCcCcCCCCcCCcCCCCCCEEECCCCcccccCCcCCCCCCCCCEEEccCcccccc-CCccccCCCCCCEEec
Q 005045 11 MTQDLNLTYNYLSGKIPTNLSHCTELRSFEASVNDFVGQIPNQLSSLTKLEIIGLGGSNLTGN-VPAWIGNFSSLKALSL 89 (717)
Q Consensus 11 ~~~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~-~p~~~~~l~~L~~L~L 89 (717)
.-+.++.++++++ .+|. +. ++|++|+|++|.+++..|..|.++++|++|+|++|.+.+. .+..|.++++|++|+|
T Consensus 11 ~~~~~~c~~~~l~-~lp~-l~--~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~L 86 (455)
T 3v47_A 11 IGYNAICINRGLH-QVPE-LP--AHVNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKL 86 (455)
T ss_dssp ETTEEECCSSCCS-SCCC-CC--TTCCEEECCSSCCCEECTTTTSSCTTCCEEECCCCSTTCEECTTTTTTCTTCCEEEC
T ss_pred EccccCcCCCCcc-cCCC-CC--CccCEEEecCCccCcCChhHhccCccccEEECcCCcccceECcccccccccCCEEeC
Confidence 3457899999998 6776 33 7899999999999988899999999999999999999744 4678999999999999
Q ss_pred cCCcCcccCChhhhccCCCCeEeccCCCCCCCCCcc--ccCCCCccEEEcccCcccccCCcccccCCCCcceeecccccc
Q 005045 90 AWNNLRGSIPNELGQLSGLGFFTLYGNFISGIIPSS--IYNISSIYYFSVTQNQLHGQLPTDVGLTLPNLKIFAGAVNYF 167 (717)
Q Consensus 90 ~~n~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~--~~~l~~L~~L~L~~N~l~~~l~~~~~~~l~~L~~L~l~~n~l 167 (717)
++|++++..|..|.++++|++|+|++|.+++..+.. |.++++|++|+|++|.+++..|...+..+++|++|++++|.+
T Consensus 87 s~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l 166 (455)
T 3v47_A 87 DYNQFLQLETGAFNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFNKV 166 (455)
T ss_dssp TTCTTCEECTTTTTTCTTCCEEECTTSCCBTHHHHSSTTTTCTTCCEEECCSSBCCSCCCCGGGGGCTTCCEEECTTCCB
T ss_pred CCCccCccChhhccCcccCCEEeCCCCCCCccccCcccccCcccCCEEECCCCccCccCcccccCCCCcccEEeCCCCcc
Confidence 999999888999999999999999999999755544 999999999999999999666777788999999999999999
Q ss_pred cccCCccCCCC--CCCCEEeccCccccccCCCC--------ccCCCCCCeeeccccccCCcccCchhhhhhhcc---CCC
Q 005045 168 TGSIPVSLSNA--SNLQVLDFAENGLTGTIPGN--------FGSLKDLVRLNFDQNELGSREIGDLNFLKFLAN---CTS 234 (717)
Q Consensus 168 ~~~~~~~~~~l--~~L~~L~l~~N~l~~~~~~~--------~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~---l~~ 234 (717)
.+..+..+..+ .+|+.|++++|.+.+..+.. +..+++|+.|++++|.++... +..+.. .++
T Consensus 167 ~~~~~~~l~~l~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~------~~~~~~~~~~~~ 240 (455)
T 3v47_A 167 KSICEEDLLNFQGKHFTLLRLSSITLQDMNEYWLGWEKCGNPFKNTSITTLDLSGNGFKESM------AKRFFDAIAGTK 240 (455)
T ss_dssp SCCCTTTSGGGTTCEEEEEECTTCBCTTCSTTCTTHHHHCCTTTTCEEEEEECTTSCCCHHH------HHHHHHHTTTCC
T ss_pred cccChhhhhccccccccccccccCcccccchhhccccccccccccceeeeEecCCCcccccc------hhhhhccccccc
Confidence 99999888876 79999999999999655544 336789999999999998755 444443 389
Q ss_pred CCEEEeecCcccCc----------Cchhhhhc-cccccEEecCCCccCCCCCccccCCCCCCEEEccCCcCccccchhhh
Q 005045 235 LEVLGLARNSFGGE----------MPISIANL-STHLRRLTMGENLMHGNIPVGIGNLVNLNLLGLEGNNLSGSVPEVIG 303 (717)
Q Consensus 235 L~~L~L~~N~l~~~----------~p~~~~~~-~~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~ 303 (717)
|+.|++++|.+.+. .+..+... .++|+.|++++|.+.+..+..|.++++|++|+|++|++++..|..|.
T Consensus 241 L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~ 320 (455)
T 3v47_A 241 IQSLILSNSYNMGSSFGHTNFKDPDNFTFKGLEASGVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNEINKIDDNAFW 320 (455)
T ss_dssp EEEEECTTCTTTSCCTTCCSSCCCCTTTTGGGTTSCCCEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTT
T ss_pred eeeEeeccccccccccchhhhccCcccccccccccCceEEEecCccccccchhhcccCCCCCEEECCCCcccccChhHhc
Confidence 99999999865532 11222221 14899999999999999999999999999999999999988899999
Q ss_pred cCCCCCeEEcccCcCCCCCCcccccccccceeecccccccccCCcCccCcCCCceEEeecccCCCCCCc
Q 005045 304 RLNKLEGLGLNVNKFSGLIPSSLGNLTILTRLWMEENRLEGSIPPSLGNCQKLLVLNLSSNDLNGTIPK 372 (717)
Q Consensus 304 ~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~ 372 (717)
++++|++|+|++|++++..|..|.++++|++|+|++|++++..|..|..+++|++|++++|.+++ +|.
T Consensus 321 ~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~-~~~ 388 (455)
T 3v47_A 321 GLTHLLKLNLSQNFLGSIDSRMFENLDKLEVLDLSYNHIRALGDQSFLGLPNLKELALDTNQLKS-VPD 388 (455)
T ss_dssp TCTTCCEEECCSSCCCEECGGGGTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSC-CCT
T ss_pred CcccCCEEECCCCccCCcChhHhcCcccCCEEECCCCcccccChhhccccccccEEECCCCcccc-CCH
Confidence 99999999999999999989999999999999999999998889999999999999999999985 444
No 40
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=100.00 E-value=1.5e-40 Score=373.89 Aligned_cols=354 Identities=21% Similarity=0.261 Sum_probs=275.1
Q ss_pred cceeeCCcc--eecEEEcCCCcCcCCCCcCCcCCCCCCEEECCCCcccccCCcCCCCCCCCCEEEccCccccccCCcccc
Q 005045 2 ELIMIPEHL--MTQDLNLTYNYLSGKIPTNLSHCTELRSFEASVNDFVGQIPNQLSSLTKLEIIGLGGSNLTGNVPAWIG 79 (717)
Q Consensus 2 ~l~~~p~~~--~~~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~ 79 (717)
.++.+|... .+++|+|++|++++..|..|..+++|++|+|++|.+++..|..|.++++|++|+|++|.|+ .+|..
T Consensus 42 ~L~~ip~~~~~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~-~lp~~-- 118 (562)
T 3a79_B 42 NLTHVPKDLPPRTKALSLSQNSISELRMPDISFLSELRVLRLSHNRIRSLDFHVFLFNQDLEYLDVSHNRLQ-NISCC-- 118 (562)
T ss_dssp CCCSCCTTSCTTCCEEECCSSCCCCCCGGGTTTCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECTTSCCC-EECSC--
T ss_pred CCccCCCCCCCCcCEEECCCCCccccChhhhccCCCccEEECCCCCCCcCCHHHhCCCCCCCEEECCCCcCC-ccCcc--
Confidence 356677654 7889999999998777788999999999999999998888888999999999999999988 56665
Q ss_pred CCCCCCEEeccCCcCccc-CChhhhccCCCCeEeccCCCCCCCCCccccCCCCccEEEcccCcc--cccCCccccc----
Q 005045 80 NFSSLKALSLAWNNLRGS-IPNELGQLSGLGFFTLYGNFISGIIPSSIYNISSIYYFSVTQNQL--HGQLPTDVGL---- 152 (717)
Q Consensus 80 ~l~~L~~L~L~~n~l~~~-~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l--~~~l~~~~~~---- 152 (717)
.+++|++|+|++|++++. .|..|.++++|++|+|++|.++......+.++ +|++|++++|.+ ++..|..+..
T Consensus 119 ~l~~L~~L~Ls~N~l~~l~~p~~~~~l~~L~~L~L~~n~l~~~~~~~l~~L-~L~~L~L~~n~l~~~~~~~~~l~~l~~~ 197 (562)
T 3a79_B 119 PMASLRHLDLSFNDFDVLPVCKEFGNLTKLTFLGLSAAKFRQLDLLPVAHL-HLSCILLDLVSYHIKGGETESLQIPNTT 197 (562)
T ss_dssp CCTTCSEEECCSSCCSBCCCCGGGGGCTTCCEEEEECSBCCTTTTGGGTTS-CEEEEEEEESSCCCCSSSCCEEEECCEE
T ss_pred ccccCCEEECCCCCccccCchHhhcccCcccEEecCCCccccCchhhhhhc-eeeEEEeecccccccccCcccccccCcc
Confidence 788999999999998863 35788999999999999999886433333333 449999999888 5444433221
Q ss_pred ---------------------CC-------------------------------------------------------CC
Q 005045 153 ---------------------TL-------------------------------------------------------PN 156 (717)
Q Consensus 153 ---------------------~l-------------------------------------------------------~~ 156 (717)
.+ ++
T Consensus 198 ~l~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~l~~~~~~l~~l~~L~~L~L~~~~l~~~~~~~~~~~~~~~~ 277 (562)
T 3a79_B 198 VLHLVFHPNSLFSVQVNMSVNALGHLQLSNIKLNDENCQRLMTFLSELTRGPTLLNVTLQHIETTWKCSVKLFQFFWPRP 277 (562)
T ss_dssp EEEEEECSSSCCCCCCEEEESSEEEEEEEEEECCSTTHHHHHHHHHHHHSCSSCEEEEEEEEEECHHHHHHHHHHHTTSS
T ss_pred eEEEEecCccchhhhhhhcccccceEEEecccccccccchHHHHHHHHhccCcceEEEecCCcCcHHHHHHHHHhhhccc
Confidence 11 25
Q ss_pred cceeecccccccccCCccC-----CCC--------------------------CCCCEEeccCccccccCCCCccCCCCC
Q 005045 157 LKIFAGAVNYFTGSIPVSL-----SNA--------------------------SNLQVLDFAENGLTGTIPGNFGSLKDL 205 (717)
Q Consensus 157 L~~L~l~~n~l~~~~~~~~-----~~l--------------------------~~L~~L~l~~N~l~~~~~~~~~~l~~L 205 (717)
|++|++++|.+.+.+|..+ ..+ .+|++|++++|.+.... .+..+++|
T Consensus 278 L~~L~l~~n~l~~~ip~~~~~~~~~~L~~L~~~~~~~~~~~~p~~~~~~~~~~~~L~~L~l~~n~~~~~~--~~~~l~~L 355 (562)
T 3a79_B 278 VEYLNIYNLTITERIDREEFTYSETALKSLMIEHVKNQVFLFSKEALYSVFAEMNIKMLSISDTPFIHMV--CPPSPSSF 355 (562)
T ss_dssp EEEEEEEEEEECSCCCCCCCCCCSCSCCEEEEEEEEECCCSSCHHHHHHHHHTCCCSEEEEESSCCCCCC--CCSSCCCC
T ss_pred ccEEEEeccEeeccccchhhhcccccchheehhhcccceeecChhhhhhhhccCcceEEEccCCCccccc--CccCCCCc
Confidence 6666666777766666555 222 23555666666554211 12678899
Q ss_pred CeeeccccccCCcccCchhhhhhhccCCCCCEEEeecCcccC--cCchhhhhccccccEEecCCCccCCCCC-ccccCCC
Q 005045 206 VRLNFDQNELGSREIGDLNFLKFLANCTSLEVLGLARNSFGG--EMPISIANLSTHLRRLTMGENLMHGNIP-VGIGNLV 282 (717)
Q Consensus 206 ~~L~l~~N~l~~~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~--~~p~~~~~~~~~L~~L~l~~N~l~~~~~-~~~~~l~ 282 (717)
+.|++++|+++... +..+.++++|++|+|++|++++ .+|..+..+ ++|++|++++|.+++.+| ..+..++
T Consensus 356 ~~L~l~~n~l~~~~------~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l-~~L~~L~l~~N~l~~~~~~~~~~~l~ 428 (562)
T 3a79_B 356 TFLNFTQNVFTDSV------FQGCSTLKRLQTLILQRNGLKNFFKVALMTKNM-SSLETLDVSLNSLNSHAYDRTCAWAE 428 (562)
T ss_dssp CEEECCSSCCCTTT------TTTCCSCSSCCEEECCSSCCCBTTHHHHTTTTC-TTCCEEECTTSCCBSCCSSCCCCCCT
T ss_pred eEEECCCCccccch------hhhhcccCCCCEEECCCCCcCCcccchhhhcCC-CCCCEEECCCCcCCCccChhhhcCcc
Confidence 99999999999865 6778999999999999999995 234556666 599999999999997444 4588999
Q ss_pred CCCEEEccCCcCccccchhhhcCCCCCeEEcccCcCCCCCCcccccccccceeecccccccccCCcC-ccCcCCCceEEe
Q 005045 283 NLNLLGLEGNNLSGSVPEVIGRLNKLEGLGLNVNKFSGLIPSSLGNLTILTRLWMEENRLEGSIPPS-LGNCQKLLVLNL 361 (717)
Q Consensus 283 ~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~-~~~l~~L~~L~l 361 (717)
+|+.|+|++|++++..|..+. ++|++|+|++|+++.+ |..+..+++|+.|+|++|+++ .+|.. +..+++|+.|++
T Consensus 429 ~L~~L~l~~n~l~~~~~~~l~--~~L~~L~L~~N~l~~i-p~~~~~l~~L~~L~L~~N~l~-~l~~~~~~~l~~L~~L~l 504 (562)
T 3a79_B 429 SILVLNLSSNMLTGSVFRCLP--PKVKVLDLHNNRIMSI-PKDVTHLQALQELNVASNQLK-SVPDGVFDRLTSLQYIWL 504 (562)
T ss_dssp TCCEEECCSSCCCGGGGSSCC--TTCSEEECCSSCCCCC-CTTTTSSCCCSEEECCSSCCC-CCCTTSTTTCTTCCCEEC
T ss_pred cCCEEECCCCCCCcchhhhhc--CcCCEEECCCCcCccc-ChhhcCCCCCCEEECCCCCCC-CCCHHHHhcCCCCCEEEe
Confidence 999999999999876666543 6999999999999954 555669999999999999999 56665 999999999999
Q ss_pred ecccCCCCCCc
Q 005045 362 SSNDLNGTIPK 372 (717)
Q Consensus 362 ~~N~l~~~~p~ 372 (717)
++|++++.+|-
T Consensus 505 ~~N~~~c~c~~ 515 (562)
T 3a79_B 505 HDNPWDCTCPG 515 (562)
T ss_dssp CSCCBCCCHHH
T ss_pred cCCCcCCCcch
Confidence 99999988773
No 41
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=100.00 E-value=3.9e-40 Score=379.73 Aligned_cols=356 Identities=21% Similarity=0.196 Sum_probs=280.5
Q ss_pred ceecEEEcCCCcCcCCCCcCCcCCCC--CCEEECCCCcccccCCcCCCCCCCCCEEEccCccccccCCccccCCCCCCEE
Q 005045 10 LMTQDLNLTYNYLSGKIPTNLSHCTE--LRSFEASVNDFVGQIPNQLSSLTKLEIIGLGGSNLTGNVPAWIGNFSSLKAL 87 (717)
Q Consensus 10 ~~~~~L~L~~n~l~~~~~~~~~~l~~--L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L 87 (717)
..+++|+|++|++++..|..|..++. |+.|+|++|.+++..|..|.++++|++|+|++|.+++..|..|..+++|++|
T Consensus 222 ~~L~~L~L~~n~l~~~~~~~~~~l~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L 301 (680)
T 1ziw_A 222 TSIRNLSLSNSQLSTTSNTTFLGLKWTNLTMLDLSYNNLNVVGNDSFAWLPQLEYFFLEYNNIQHLFSHSLHGLFNVRYL 301 (680)
T ss_dssp SCCCEEECTTSCCCEECTTTTGGGGGSCCCEEECTTSCCCEECTTTTTTCTTCCEEECCSCCBSEECTTTTTTCTTCCEE
T ss_pred ccccEEEccCCcccccChhHhhccCcCCCCEEECCCCCcCccCcccccCcccccEeeCCCCccCccChhhhcCCCCccEE
Confidence 36788999999999888888888865 9999999999998888889999999999999999998888889999999999
Q ss_pred eccCCcCcc-----cCC----hhhhccCCCCeEeccCCCCCCCCCccccCCCCccEEEcccCcccc-cCCcccccCC--C
Q 005045 88 SLAWNNLRG-----SIP----NELGQLSGLGFFTLYGNFISGIIPSSIYNISSIYYFSVTQNQLHG-QLPTDVGLTL--P 155 (717)
Q Consensus 88 ~L~~n~l~~-----~~~----~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~-~l~~~~~~~l--~ 155 (717)
+|++|...+ .+| ..|..+++|++|+|++|.++++.+..|.++++|++|++++|.++. .++...|..+ +
T Consensus 302 ~L~~~~~~~~~~~~~lp~i~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~~~~~~l~~~~f~~~~~~ 381 (680)
T 1ziw_A 302 NLKRSFTKQSISLASLPKIDDFSFQWLKCLEHLNMEDNDIPGIKSNMFTGLINLKYLSLSNSFTSLRTLTNETFVSLAHS 381 (680)
T ss_dssp ECTTCBCCC------CCEECTTTTTTCTTCCEEECCSCCBCCCCTTTTTTCTTCCEEECTTCBSCCCEECTTTTGGGTTS
T ss_pred eccchhhhcccccccccccChhhcccCCCCCEEECCCCccCCCChhHhccccCCcEEECCCCchhhhhcchhhhcccccC
Confidence 998875542 222 368888999999999999998888889999999999999887532 4444444333 5
Q ss_pred CcceeecccccccccCCccCCCCCCCCEEeccCccccccCC-CCccCCCCCCeeeccccccCCcccCchhhhhhhccCCC
Q 005045 156 NLKIFAGAVNYFTGSIPVSLSNASNLQVLDFAENGLTGTIP-GNFGSLKDLVRLNFDQNELGSREIGDLNFLKFLANCTS 234 (717)
Q Consensus 156 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~-~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~l~~ 234 (717)
+|+.|++++|.+.+..|..|..+++|++|++++|.+++.+| ..|..+++|+.|++++|++..+. +..|..+++
T Consensus 382 ~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~------~~~~~~~~~ 455 (680)
T 1ziw_A 382 PLHILNLTKNKISKIESDAFSWLGHLEVLDLGLNEIGQELTGQEWRGLENIFEIYLSYNKYLQLT------RNSFALVPS 455 (680)
T ss_dssp CCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCEEECCSGGGTTCTTCCEEECCSCSEEECC------TTTTTTCTT
T ss_pred cCceEECCCCCCCeEChhhhhCCCCCCEEeCCCCcCccccCcccccCcccccEEecCCCCcceeC------hhhhhcCcc
Confidence 78888888888888888888888888888888888876555 57888888888888888887766 556777788
Q ss_pred CCEEEeecCccc--CcCchhhhhccccccEEecCCCccCCCCCccccCCCCCCEEEccCCcCccccc--------hhhhc
Q 005045 235 LEVLGLARNSFG--GEMPISIANLSTHLRRLTMGENLMHGNIPVGIGNLVNLNLLGLEGNNLSGSVP--------EVIGR 304 (717)
Q Consensus 235 L~~L~L~~N~l~--~~~p~~~~~~~~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~--------~~~~~ 304 (717)
|+.|++++|.++ +.+|..+..+ ++|+.|++++|.+++..+..|.++++|++|+|++|++++..+ ..|.+
T Consensus 456 L~~L~l~~n~l~~~~~~p~~~~~l-~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~~~~~ 534 (680)
T 1ziw_A 456 LQRLMLRRVALKNVDSSPSPFQPL-RNLTILDLSNNNIANINDDMLEGLEKLEILDLQHNNLARLWKHANPGGPIYFLKG 534 (680)
T ss_dssp CCEEECTTSCCBCTTCSSCTTTTC-TTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCGGGGSTTSTTSCCCTTTT
T ss_pred cccchhccccccccccCCcccccC-CCCCEEECCCCCCCcCChhhhccccccCEEeCCCCCccccchhhccCCcchhhcC
Confidence 888888888775 4566667666 478888888888877777778888888888888888775422 23677
Q ss_pred CCCCCeEEcccCcCCCCCCcccccccccceeecccccccccCCcCccCcCCCceEEeecccCCCCCCc
Q 005045 305 LNKLEGLGLNVNKFSGLIPSSLGNLTILTRLWMEENRLEGSIPPSLGNCQKLLVLNLSSNDLNGTIPK 372 (717)
Q Consensus 305 l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~ 372 (717)
+++|+.|+|++|+++.+.+..|.++++|+.|+|++|++++..+..|..+++|+.|++++|.+++..|.
T Consensus 535 l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~ 602 (680)
T 1ziw_A 535 LSHLHILNLESNGFDEIPVEVFKDLFELKIIDLGLNNLNTLPASVFNNQVSLKSLNLQKNLITSVEKK 602 (680)
T ss_dssp CTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECTTSCCCBCCHH
T ss_pred CCCCCEEECCCCCCCCCCHHHcccccCcceeECCCCCCCcCCHhHhCCCCCCCEEECCCCcCCccChh
Confidence 78888888888888866666778888888888888888755556677788888888888888754443
No 42
>3s95_A LIMK-1, LIM domain kinase 1; structural genomics, structural genomics consortium, SGC, PR kinase, transferase-antibiotic complex; HET: STU GOL; 1.65A {Homo sapiens}
Probab=100.00 E-value=9.3e-42 Score=353.91 Aligned_cols=270 Identities=24% Similarity=0.409 Sum_probs=213.0
Q ss_pred ccccccccccccCcccccceEEEEeC-CCchhhhHHhHhhhhhHHHHHHHHHHHHhcCCCCceeEEEEeeccccCCCCce
Q 005045 386 KSTDNFSKENLIGTGSFGSVYKGTLG-DGTIVAIKVLKLQQQGALKSFIDECNALKSTRHRNILRVITACSSVDLEGNDF 464 (717)
Q Consensus 386 ~~~~~y~~~~~ig~g~~g~v~~~~~~-~~~~vavK~~~~~~~~~~~~~~~e~~~l~~l~h~ni~~~~~~~~~~~~~~~~~ 464 (717)
...++|++.+.||+|+||.||+|.+. +++.||+|.+........+.+.+|++++++++||||+++++++. +++.
T Consensus 7 ~~~~~~~~~~~lG~G~~g~V~~~~~~~~~~~va~K~~~~~~~~~~~~~~~E~~~l~~l~hp~iv~~~~~~~-----~~~~ 81 (310)
T 3s95_A 7 FRPSDLIHGEVLGKGCFGQAIKVTHRETGEVMVMKELIRFDEETQRTFLKEVKVMRCLEHPNVLKFIGVLY-----KDKR 81 (310)
T ss_dssp ECGGGEEEEEEEECCSSEEEEEEEETTTCCEEEEEEESCCCHHHHHHHHHHHHHHTTCCCTTBCCEEEEEE-----ETTE
T ss_pred eChhHeeccceecCCCCEEEEEEEECCCCcEEEEEEeccCCHHHHHHHHHHHHHHHhCCCcCcccEEEEEe-----cCCe
Confidence 45679999999999999999999965 78999999886666666788999999999999999999999964 3458
Q ss_pred EEEEEecCCCCChhhhccCCCCCcccccccCHHHHHHHHHHHHHHHHHHHhcCCCCeeecCCCCCCEEeCCCCceEEeee
Q 005045 465 KALVFEFMSNGNLDQWLHPSPAEHYQFKKLSVIQRLNIAIDVASALDYLHHHCDTPIAHCDLKPSNVLLDKDMTAHVGDF 544 (717)
Q Consensus 465 ~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~dlkp~NIll~~~~~~kl~Df 544 (717)
.++||||+++++|.+++.... ..+++..+..++.||+.||+|||+. +|+||||||+||+++.++.+||+||
T Consensus 82 ~~lv~e~~~~~~L~~~l~~~~------~~~~~~~~~~i~~qi~~al~~lH~~---~ivH~dlkp~Nil~~~~~~~kl~Df 152 (310)
T 3s95_A 82 LNFITEYIKGGTLRGIIKSMD------SQYPWSQRVSFAKDIASGMAYLHSM---NIIHRDLNSHNCLVRENKNVVVADF 152 (310)
T ss_dssp EEEEEECCTTCBHHHHHHHCC------TTSCHHHHHHHHHHHHHHHHHHHHT---TEECSCCSTTSEEECTTSCEEECCC
T ss_pred eEEEEEecCCCcHHHHHHhcc------CCCCHHHHHHHHHHHHHHHHHHHhC---CccCCCCCcCeEEECCCCCEEEeec
Confidence 999999999999999997532 5689999999999999999999998 9999999999999999999999999
Q ss_pred ccchhcccccCCCCC-------CcceeecccccccccCCCccCC-CCCcccchhhHHHHHHHHHhCCCCCCCCCCCchhh
Q 005045 545 GLAKFLFEISDNPSK-------NQTVSIGLKGSIGYIPPEHMNG-QVSILGDIYSYGILLLEMFTGKRPTGDMFKDDFSI 616 (717)
Q Consensus 545 g~~~~~~~~~~~~~~-------~~~~~~~~~~~~~y~aPE~~~~-~~~~~sDvwslG~vl~elltg~~p~~~~~~~~~~~ 616 (717)
|.+............ .........||+.|+|||++.+ .++.++|||||||++|+|++|..||..........
T Consensus 153 g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Di~slG~~l~el~~g~~~~~~~~~~~~~~ 232 (310)
T 3s95_A 153 GLARLMVDEKTQPEGLRSLKKPDRKKRYTVVGNPYWMAPEMINGRSYDEKVDVFSFGIVLCEIIGRVNADPDYLPRTMDF 232 (310)
T ss_dssp TTCEECC--------------------CCCCSCGGGCCHHHHTTCCCCTHHHHHHHHHHHHHHHHTCCSSTTTSCBCTTS
T ss_pred ccceecccccccccccccccccccccccccCCCcceeCHHHhcCCCCCcHHHHHHHHHHHHHHhcCCCCCcchhhhHHHH
Confidence 999875322211100 0011124569999999999765 47999999999999999999999987643322111
Q ss_pred hHHHHhcCChhhhhhcCCCCCCCCCCcHHHHHHHHHHHHHHhhhhhhhcchhhhHHHHHHHHHHhhccCCCCcCCCCCHH
Q 005045 617 HMFVSMALPDHVMDILDPSMPLDEENDEEQIEEVIEEKEMMIHIDLEVNTKNKLEECFVSVLRIGLMCSTTSPRERIAMN 696 (717)
Q Consensus 617 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~cl~~~p~~Rps~~ 696 (717)
... .....+.. .+..++..+.+++.+||+.+|++|||++
T Consensus 233 ~~~--------~~~~~~~~---------------------------------~~~~~~~~l~~li~~~l~~dP~~Rps~~ 271 (310)
T 3s95_A 233 GLN--------VRGFLDRY---------------------------------CPPNCPPSFFPITVRCCDLDPEKRPSFV 271 (310)
T ss_dssp SBC--------HHHHHHHT---------------------------------CCTTCCTTHHHHHHHHTCSSGGGSCCHH
T ss_pred hhh--------hhcccccc---------------------------------CCCCCCHHHHHHHHHHccCChhhCcCHH
Confidence 000 00000000 1122355678899999999999999999
Q ss_pred HHHHHHHHHHHHHH
Q 005045 697 VVVNNLKTIRNCFL 710 (717)
Q Consensus 697 eil~~l~~i~~~~~ 710 (717)
|+++.|++++....
T Consensus 272 ~l~~~L~~l~~~~~ 285 (310)
T 3s95_A 272 KLEHWLETLRMHLA 285 (310)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcc
Confidence 99999999997764
No 43
>3uim_A Brassinosteroid insensitive 1-associated receptor; kinase, protein kinase, transferase; HET: SEP TPO ANP; 2.20A {Arabidopsis thaliana} PDB: 3ulz_A* 3tl8_A*
Probab=100.00 E-value=1.3e-41 Score=355.50 Aligned_cols=286 Identities=36% Similarity=0.612 Sum_probs=224.4
Q ss_pred CCCCcccccccccccccccccCcccccceEEEEeCCCchhhhHHhHhhhh-hHHHHHHHHHHHHhcCCCCceeEEEEeec
Q 005045 377 SGMSYSDISKSTDNFSKENLIGTGSFGSVYKGTLGDGTIVAIKVLKLQQQ-GALKSFIDECNALKSTRHRNILRVITACS 455 (717)
Q Consensus 377 ~~~s~~~~~~~~~~y~~~~~ig~g~~g~v~~~~~~~~~~vavK~~~~~~~-~~~~~~~~e~~~l~~l~h~ni~~~~~~~~ 455 (717)
..+++.++....++|++.+.||+|+||.||+|..++++.||+|++..... .....+.+|+++++.++||||+++++++.
T Consensus 18 ~~~~~~~~~~~~~~y~~~~~lg~G~~g~V~~~~~~~~~~vavK~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~ 97 (326)
T 3uim_A 18 KRFSLRELQVASDNFSNKNILGRGGFGKVYKGRLADGTLVAVKRLKEERTQGGELQFQTEVEMISMAVHRNLLRLRGFCM 97 (326)
T ss_dssp EECCTHHHHTTTTSSCSTTEEECCSSSEEEEECCSSSCCEEEEECCC-----CCCHHHHHHHGGGTCCCTTBCCCCEEEC
T ss_pred ceecHHHHHHHhhccccceeEecCCCcEEEEEEecCCCEEEEEEeccccCchHHHHHHHHHHHHHhccCCCccceEEEEe
Confidence 35888999999999999999999999999999988899999999875432 22346889999999999999999999954
Q ss_pred cccCCCCceEEEEEecCCCCChhhhccCCCCCcccccccCHHHHHHHHHHHHHHHHHHHhcCCCCeeecCCCCCCEEeCC
Q 005045 456 SVDLEGNDFKALVFEFMSNGNLDQWLHPSPAEHYQFKKLSVIQRLNIAIDVASALDYLHHHCDTPIAHCDLKPSNVLLDK 535 (717)
Q Consensus 456 ~~~~~~~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~dlkp~NIll~~ 535 (717)
..+..++||||+++++|.+++..... ....+++..+..++.|++.||+|||+.+..+|+||||||+||+++.
T Consensus 98 -----~~~~~~lv~e~~~~~~L~~~l~~~~~---~~~~~~~~~~~~i~~~i~~~l~~lH~~~~~~ivH~Dlkp~Nil~~~ 169 (326)
T 3uim_A 98 -----TPTERLLVYPYMANGSVASCLRERPE---SQPPLDWPKRQRIALGSARGLAYLHDHCDPKIIHRDVKAANILLDE 169 (326)
T ss_dssp -----CSSCCEEEEECCTTCBHHHHHHCCST---TCCCCCHHHHHHHHHHHHHHHHHHHHSSSSCEECCCCSGGGEEECT
T ss_pred -----cCCceEEEEEeccCCCHHHHHHhccc---cCCCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEeCCCchhhEEECC
Confidence 44578999999999999999976532 1245899999999999999999999965558999999999999999
Q ss_pred CCceEEeeeccchhcccccCCCCCCcceeecccccccccCCCccC-CCCCcccchhhHHHHHHHHHhCCCCCCCC---CC
Q 005045 536 DMTAHVGDFGLAKFLFEISDNPSKNQTVSIGLKGSIGYIPPEHMN-GQVSILGDIYSYGILLLEMFTGKRPTGDM---FK 611 (717)
Q Consensus 536 ~~~~kl~Dfg~~~~~~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~-~~~~~~sDvwslG~vl~elltg~~p~~~~---~~ 611 (717)
++.+||+|||.+..... ..........||+.|+|||++. +.++.++|||||||++|+|++|..||... ..
T Consensus 170 ~~~~kl~Dfg~~~~~~~------~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~g~~pf~~~~~~~~ 243 (326)
T 3uim_A 170 EFEAVVGDFGLAKLMDY------KDTHVTTAVRGTIGHIAPEYLSTGKSSEKTDVFGYGVMLLELITGQRAFDLARLAND 243 (326)
T ss_dssp TCCEEECCCSSCEECCS------SSSCEECCCCSCGGGCCHHHHHHSEECHHHHHHHHHHHHHHHHHCCCSBCHHHHTTT
T ss_pred CCCEEeccCccccccCc------ccccccccccCCcCccCHHHhccCCCCccccchhHHHHHHHHHhCCCcccccccccc
Confidence 99999999999986521 1122233455899999999964 45899999999999999999999999632 12
Q ss_pred CchhhhHHHHhcCChh-hhhhcCCCCCCCCCCcHHHHHHHHHHHHHHhhhhhhhcchhhhHHHHHHHHHHhhccCCCCcC
Q 005045 612 DDFSIHMFVSMALPDH-VMDILDPSMPLDEENDEEQIEEVIEEKEMMIHIDLEVNTKNKLEECFVSVLRIGLMCSTTSPR 690 (717)
Q Consensus 612 ~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~cl~~~p~ 690 (717)
.......+........ +....+...... ...+++..+.+++.+||+.+|+
T Consensus 244 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------------------------~~~~~~~~l~~li~~cl~~dP~ 294 (326)
T 3uim_A 244 DDVMLLDWVKGLLKEKKLEALVDVDLQGN-----------------------------YKDEEVEQLIQVALLCTQSSPM 294 (326)
T ss_dssp SCSBHHHHHTTTTSSCCSTTSSCTTCTTS-----------------------------CCHHHHHHHHHHHHHHTCSCGG
T ss_pred cchhHHHHHHHHhhchhhhhhcChhhccc-----------------------------cCHHHHHHHHHHHHHHhCcCCc
Confidence 2223333333322222 333333333221 2344577899999999999999
Q ss_pred CCCCHHHHHHHHHHH
Q 005045 691 ERIAMNVVVNNLKTI 705 (717)
Q Consensus 691 ~Rps~~eil~~l~~i 705 (717)
+|||++||++.|+..
T Consensus 295 ~Rps~~ell~~L~~~ 309 (326)
T 3uim_A 295 ERPKMSEVVRMLEGD 309 (326)
T ss_dssp GSCCHHHHHHHHHTS
T ss_pred cCCCHHHHHHHhcCc
Confidence 999999999999753
No 44
>3p86_A Serine/threonine-protein kinase CTR1; ETR1, ERS1, ETR2, phosphorylation, transferase; HET: STU; 2.50A {Arabidopsis thaliana} PDB: 3ppz_A*
Probab=100.00 E-value=2e-41 Score=350.54 Aligned_cols=272 Identities=28% Similarity=0.426 Sum_probs=203.1
Q ss_pred cCCCCcccccccccccccccccCcccccceEEEEeCCCchhhhHHhHhhh--hhHHHHHHHHHHHHhcCCCCceeEEEEe
Q 005045 376 QSGMSYSDISKSTDNFSKENLIGTGSFGSVYKGTLGDGTIVAIKVLKLQQ--QGALKSFIDECNALKSTRHRNILRVITA 453 (717)
Q Consensus 376 ~~~~s~~~~~~~~~~y~~~~~ig~g~~g~v~~~~~~~~~~vavK~~~~~~--~~~~~~~~~e~~~l~~l~h~ni~~~~~~ 453 (717)
+......++....++|++.+.||+|+||.||+|++ .|+.||+|++.... ....+.+.+|++++++++||||++++++
T Consensus 24 ~~~~~~~~~~i~~~~y~i~~~lG~G~~g~V~~~~~-~~~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~hp~iv~~~~~ 102 (309)
T 3p86_A 24 QGAMDGDDMDIPWCDLNIKEKIGAGSFGTVHRAEW-HGSDVAVKILMEQDFHAERVNEFLREVAIMKRLRHPNIVLFMGA 102 (309)
T ss_dssp --------CBCCGGGEEEEEEEEECSSEEEEEEEE-TTEEEEEEEECCCCCSHHHHHHHHHHHHHHHHCCCTTBCCEEEE
T ss_pred ccCCCcccccCChhHceeeeEeecCCCeEEEEEEE-CCCcEEEEEecCCCCCHHHHHHHHHHHHHHHhCCCCCEeeEEEE
Confidence 44677778888899999999999999999999987 58889999986442 3445778899999999999999999999
Q ss_pred eccccCCCCceEEEEEecCCCCChhhhccCCCCCcccccccCHHHHHHHHHHHHHHHHHHHhcCCCC--eeecCCCCCCE
Q 005045 454 CSSVDLEGNDFKALVFEFMSNGNLDQWLHPSPAEHYQFKKLSVIQRLNIAIDVASALDYLHHHCDTP--IAHCDLKPSNV 531 (717)
Q Consensus 454 ~~~~~~~~~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~i~~~i~~~l~~LH~~~~~~--ivH~dlkp~NI 531 (717)
+ ......++||||+++++|.+++.... ....+++..+..++.||+.||+|||+. + |+||||||+||
T Consensus 103 ~-----~~~~~~~lv~e~~~~~~L~~~l~~~~----~~~~~~~~~~~~i~~qi~~aL~~LH~~---~~~ivH~Dikp~NI 170 (309)
T 3p86_A 103 V-----TQPPNLSIVTEYLSRGSLYRLLHKSG----AREQLDERRRLSMAYDVAKGMNYLHNR---NPPIVHRNLKSPNL 170 (309)
T ss_dssp E-----CSTTCCEEEEECCTTCBHHHHHHSTT----HHHHSCHHHHHHHHHHHHHHHHHHHTS---SSCCCCTTCCGGGE
T ss_pred E-----EECCceEEEEecCCCCcHHHHHhhcC----CCCCCCHHHHHHHHHHHHHHHHHHHcC---CCCEECCCCChhhE
Confidence 5 34557899999999999999997642 113489999999999999999999997 8 99999999999
Q ss_pred EeCCCCceEEeeeccchhcccccCCCCCCcceeecccccccccCCCccCCC-CCcccchhhHHHHHHHHHhCCCCCCCCC
Q 005045 532 LLDKDMTAHVGDFGLAKFLFEISDNPSKNQTVSIGLKGSIGYIPPEHMNGQ-VSILGDIYSYGILLLEMFTGKRPTGDMF 610 (717)
Q Consensus 532 ll~~~~~~kl~Dfg~~~~~~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~-~~~~sDvwslG~vl~elltg~~p~~~~~ 610 (717)
+++.++.+||+|||.+..... .........||+.|+|||++.+. ++.++|||||||++|+|++|..||....
T Consensus 171 ll~~~~~~kL~Dfg~a~~~~~-------~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~elltg~~Pf~~~~ 243 (309)
T 3p86_A 171 LVDKKYTVKVCDFGLSRLKAS-------TFLSSKSAAGTPEWMAPEVLRDEPSNEKSDVYSFGVILWELATLQQPWGNLN 243 (309)
T ss_dssp EECTTCCEEECCCC------------------------CCTTSCHHHHTTCCCCTTHHHHHHHHHHHHHHHCCCTTTTSC
T ss_pred EEeCCCcEEECCCCCCccccc-------cccccccCCCCccccChhhhcCCCCCchhhHHHHHHHHHHHHhCCCCCCCCC
Confidence 999999999999999975411 11222345689999999997654 8999999999999999999999997542
Q ss_pred CCchhhhHHHHhcCChhhhhhcCCCCCCCCCCcHHHHHHHHHHHHHHhhhhhhhcchhhhHHHHHHHHHHhhccCCCCcC
Q 005045 611 KDDFSIHMFVSMALPDHVMDILDPSMPLDEENDEEQIEEVIEEKEMMIHIDLEVNTKNKLEECFVSVLRIGLMCSTTSPR 690 (717)
Q Consensus 611 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~cl~~~p~ 690 (717)
... ........ ..... .+..++..+.+++.+||+.+|+
T Consensus 244 ~~~--~~~~~~~~---------~~~~~-------------------------------~~~~~~~~l~~li~~~l~~dP~ 281 (309)
T 3p86_A 244 PAQ--VVAAVGFK---------CKRLE-------------------------------IPRNLNPQVAAIIEGCWTNEPW 281 (309)
T ss_dssp HHH--HHHHHHHS---------CCCCC-------------------------------CCTTSCHHHHHHHHHHTCSSGG
T ss_pred HHH--HHHHHHhc---------CCCCC-------------------------------CCccCCHHHHHHHHHHccCChh
Confidence 211 11111000 00000 1122355688999999999999
Q ss_pred CCCCHHHHHHHHHHHHHHH
Q 005045 691 ERIAMNVVVNNLKTIRNCF 709 (717)
Q Consensus 691 ~Rps~~eil~~l~~i~~~~ 709 (717)
+|||++|+++.|+.+.+..
T Consensus 282 ~Rps~~~ll~~L~~~~~~~ 300 (309)
T 3p86_A 282 KRPSFATIMDLLRPLIKSA 300 (309)
T ss_dssp GSCCHHHHHHHHHHHHC--
T ss_pred hCcCHHHHHHHHHHHHHhC
Confidence 9999999999999987543
No 45
>3soc_A Activin receptor type-2A; structural genomics consortium, SGC, transferase, protein KI; HET: GVD; 1.95A {Homo sapiens} PDB: 3q4t_A* 4asx_A* 2qlu_A*
Probab=100.00 E-value=4.5e-41 Score=350.39 Aligned_cols=287 Identities=21% Similarity=0.274 Sum_probs=214.7
Q ss_pred ccccccccccccccccCcccccceEEEEeCCCchhhhHHhHhhhhhHHHHHHHHHHHHhcCCCCceeEEEEeeccccCCC
Q 005045 382 SDISKSTDNFSKENLIGTGSFGSVYKGTLGDGTIVAIKVLKLQQQGALKSFIDECNALKSTRHRNILRVITACSSVDLEG 461 (717)
Q Consensus 382 ~~~~~~~~~y~~~~~ig~g~~g~v~~~~~~~~~~vavK~~~~~~~~~~~~~~~e~~~l~~l~h~ni~~~~~~~~~~~~~~ 461 (717)
.++....++|++.++||+|+||.||+|++. ++.||+|++...... ......|+.++++++||||+++++++.... ..
T Consensus 17 ~n~~~~~~~y~~~~~lg~G~~g~Vy~~~~~-~~~vavK~~~~~~~~-~~~~~~E~~~l~~l~hpniv~~~~~~~~~~-~~ 93 (322)
T 3soc_A 17 ENLYFQSMPLQLLEVKARGRFGCVWKAQLL-NEYVAVKIFPIQDKQ-SWQNEYEVYSLPGMKHENILQFIGAEKRGT-SV 93 (322)
T ss_dssp CCEEETTEEEEEEEEEECSTTCEEEEEEET-TEEEEEEEECGGGHH-HHHHHHHHHTSTTCCCTTBCCEEEEEEEEC-SS
T ss_pred cccccchhhchhhheecccCceEEEEEEEC-CCEEEEEEeecCchH-HHHHHHHHHHHhcCCCCCchhhcceeccCC-CC
Confidence 445566789999999999999999999975 789999998755332 345567999999999999999999976532 22
Q ss_pred CceEEEEEecCCCCChhhhccCCCCCcccccccCHHHHHHHHHHHHHHHHHHHhc-------CCCCeeecCCCCCCEEeC
Q 005045 462 NDFKALVFEFMSNGNLDQWLHPSPAEHYQFKKLSVIQRLNIAIDVASALDYLHHH-------CDTPIAHCDLKPSNVLLD 534 (717)
Q Consensus 462 ~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~i~~~i~~~l~~LH~~-------~~~~ivH~dlkp~NIll~ 534 (717)
....++||||+++++|.+++.. ..+++..+..++.||+.||+|||+. +.++|+||||||+||+++
T Consensus 94 ~~~~~lv~e~~~~g~L~~~l~~--------~~~~~~~~~~i~~qi~~al~~LH~~~~~l~~~~~~~ivH~Dlkp~Nill~ 165 (322)
T 3soc_A 94 DVDLWLITAFHEKGSLSDFLKA--------NVVSWNELCHIAETMARGLAYLHEDIPGLKDGHKPAISHRDIKSKNVLLK 165 (322)
T ss_dssp SEEEEEEEECCTTCBHHHHHHH--------CCBCHHHHHHHHHHHHHHHHHHTCCEEEETTEEECEEECSCCSGGGEEEC
T ss_pred CceEEEEEecCCCCCHHHHHHh--------cCCCHHHHHHHHHHHHHHHHHHHhhccccccccCCCEEeCCCChHhEEEC
Confidence 3458999999999999999964 3489999999999999999999984 123899999999999999
Q ss_pred CCCceEEeeeccchhcccccCCCCCCcceeecccccccccCCCccCC------CCCcccchhhHHHHHHHHHhCCCCCCC
Q 005045 535 KDMTAHVGDFGLAKFLFEISDNPSKNQTVSIGLKGSIGYIPPEHMNG------QVSILGDIYSYGILLLEMFTGKRPTGD 608 (717)
Q Consensus 535 ~~~~~kl~Dfg~~~~~~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~------~~~~~sDvwslG~vl~elltg~~p~~~ 608 (717)
.++.+||+|||.++...... .........||+.|+|||++.+ .++.++|||||||++|||++|..||..
T Consensus 166 ~~~~~kL~DFg~a~~~~~~~-----~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~~~~~DiwslG~il~el~tg~~pf~~ 240 (322)
T 3soc_A 166 NNLTACIADFGLALKFEAGK-----SAGDTHGQVGTRRYMAPEVLEGAINFQRDAFLRIDMYAMGLVLWELASRCTAADG 240 (322)
T ss_dssp TTCCEEECCCTTCEEECTTS-----CCCCCTTCCCCGGGCCHHHHTTCCCCCHHHHHHHHHHHHHHHHHHHHTTBTTSSS
T ss_pred CCCeEEEccCCccccccccc-----CccccccCccCccccCHhhcccccccCcCCCccchhHHHHHHHHHHHhCCCCCCC
Confidence 99999999999997653221 1112233568999999999765 356788999999999999999999976
Q ss_pred CCCCchhhhHHHHhcCC--hhhhhh-cCCCCCCCCCCcHHHHHHHHHHHHHHhhhhhhhcchhhhHHHHHHHHHHhhccC
Q 005045 609 MFKDDFSIHMFVSMALP--DHVMDI-LDPSMPLDEENDEEQIEEVIEEKEMMIHIDLEVNTKNKLEECFVSVLRIGLMCS 685 (717)
Q Consensus 609 ~~~~~~~~~~~~~~~~~--~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~cl 685 (717)
................+ ..+... ....... ..........++..+.+++.+||
T Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------------------~~~~~~~~~~~~~~l~~li~~cl 296 (322)
T 3soc_A 241 PVDEYMLPFEEEIGQHPSLEDMQEVVVHKKKRP------------------------VLRDYWQKHAGMAMLCETIEECW 296 (322)
T ss_dssp CCCCCCCTTHHHHCSSCCHHHHHHHHTTSCCCC------------------------CCCGGGGSSHHHHHHHHHHHHHT
T ss_pred CcchhccchhhhhccCCchhhhhhhhhcccCCC------------------------CccccccccchHHHHHHHHHHHc
Confidence 54432211111111111 011111 1111111 11111223345777999999999
Q ss_pred CCCcCCCCCHHHHHHHHHHHHHH
Q 005045 686 TTSPRERIAMNVVVNNLKTIRNC 708 (717)
Q Consensus 686 ~~~p~~Rps~~eil~~l~~i~~~ 708 (717)
+.||++||||+||++.|+++++.
T Consensus 297 ~~dP~~Rps~~ell~~L~~l~~~ 319 (322)
T 3soc_A 297 DHDAEARLSAGCVGERITQMQRL 319 (322)
T ss_dssp CSSGGGSCCHHHHHHHHHHHHHH
T ss_pred cCChhhCcCHHHHHHHHHHHHHH
Confidence 99999999999999999999864
No 46
>3fxz_A Serine/threonine-protein kinase PAK 1; transferase, ATP-binding, phosphorylation, allosteric enzyme, alternative splicing, apoptosis, cell junction; HET: TPO FLL; 1.64A {Homo sapiens} SCOP: d.144.1.7 PDB: 3fy0_A* 4daw_A* 3q52_A* 3q53_A* 1yhw_A 1f3m_C 1yhv_A 2hy8_1* 3q4z_A*
Probab=100.00 E-value=2.5e-41 Score=347.98 Aligned_cols=252 Identities=22% Similarity=0.321 Sum_probs=203.3
Q ss_pred cccccccccccccCcccccceEEEEe-CCCchhhhHHhHhhhhhHHHHHHHHHHHHhcCCCCceeEEEEeeccccCCCCc
Q 005045 385 SKSTDNFSKENLIGTGSFGSVYKGTL-GDGTIVAIKVLKLQQQGALKSFIDECNALKSTRHRNILRVITACSSVDLEGND 463 (717)
Q Consensus 385 ~~~~~~y~~~~~ig~g~~g~v~~~~~-~~~~~vavK~~~~~~~~~~~~~~~e~~~l~~l~h~ni~~~~~~~~~~~~~~~~ 463 (717)
....++|++.+.||+|+||.||+|.+ .+++.||+|++........+.+.+|+.++++++||||+++++++. ..+
T Consensus 16 ~~~~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~E~~~l~~l~hp~iv~~~~~~~-----~~~ 90 (297)
T 3fxz_A 16 GDPKKKYTRFEKIGQGASGTVYTAMDVATGQEVAIRQMNLQQQPKKELIINEILVMRENKNPNIVNYLDSYL-----VGD 90 (297)
T ss_dssp SCGGGTBCCCEEEEEETTEEEEEEEBTTTCCEEEEEEEEGGGCSCHHHHHHHHHHHHHCCCTTBCCEEEEEE-----ETT
T ss_pred CChhhceeeeeeeccCCCeEEEEEEECCCCcEEEEEEeecccccHHHHHHHHHHHHhcCCCCCCCeEeEEEE-----ECC
Confidence 34667999999999999999999995 489999999987665555678899999999999999999999854 345
Q ss_pred eEEEEEecCCCCChhhhccCCCCCcccccccCHHHHHHHHHHHHHHHHHHHhcCCCCeeecCCCCCCEEeCCCCceEEee
Q 005045 464 FKALVFEFMSNGNLDQWLHPSPAEHYQFKKLSVIQRLNIAIDVASALDYLHHHCDTPIAHCDLKPSNVLLDKDMTAHVGD 543 (717)
Q Consensus 464 ~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~dlkp~NIll~~~~~~kl~D 543 (717)
..++||||+++++|.+++.. ..+++..+..++.|++.||+|||+. +|+||||||+||+++.++.+||+|
T Consensus 91 ~~~lv~e~~~~~~L~~~~~~--------~~~~~~~~~~~~~qi~~~l~~lH~~---~i~H~Dlkp~Nil~~~~~~~kl~D 159 (297)
T 3fxz_A 91 ELWVVMEYLAGGSLTDVVTE--------TCMDEGQIAAVCRECLQALEFLHSN---QVIHRDIKSDNILLGMDGSVKLTD 159 (297)
T ss_dssp EEEEEEECCTTCBHHHHHHH--------SCCCHHHHHHHHHHHHHHHHHHHHT---TEECCCCSGGGEEECTTCCEEECC
T ss_pred EEEEEEECCCCCCHHHHHhh--------cCCCHHHHHHHHHHHHHHHHHHHhC---CceeCCCCHHHEEECCCCCEEEee
Confidence 89999999999999999864 3488999999999999999999998 999999999999999999999999
Q ss_pred eccchhcccccCCCCCCcceeecccccccccCCCccCC-CCCcccchhhHHHHHHHHHhCCCCCCCCCCCchhhhHHHHh
Q 005045 544 FGLAKFLFEISDNPSKNQTVSIGLKGSIGYIPPEHMNG-QVSILGDIYSYGILLLEMFTGKRPTGDMFKDDFSIHMFVSM 622 (717)
Q Consensus 544 fg~~~~~~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~-~~~~~sDvwslG~vl~elltg~~p~~~~~~~~~~~~~~~~~ 622 (717)
||.+..... .........||+.|+|||++.+ .++.++|||||||++|+|++|..||.......... .....
T Consensus 160 fg~~~~~~~-------~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~ell~g~~pf~~~~~~~~~~-~~~~~ 231 (297)
T 3fxz_A 160 FGFCAQITP-------EQSKRSTMVGTPYWMAPEVVTRKAYGPKVDIWSLGIMAIEMIEGEPPYLNENPLRALY-LIATN 231 (297)
T ss_dssp CTTCEECCS-------TTCCBCCCCSCGGGCCHHHHHCSCBCTHHHHHHHHHHHHHHHHSSCTTTTSCHHHHHH-HHHHH
T ss_pred CCCceecCC-------cccccCCccCCcCccChhhhcCCCCCcHHHHHHHHHHHHHHHhCCCCCCCCCHHHHHH-HHHhC
Confidence 999876521 1112334569999999999655 58999999999999999999999996542211100 00000
Q ss_pred cCChhhhhhcCCCCCCCCCCcHHHHHHHHHHHHHHhhhhhhhcchhhhHHHHHHHHHHhhccCCCCcCCCCCHHHHHH
Q 005045 623 ALPDHVMDILDPSMPLDEENDEEQIEEVIEEKEMMIHIDLEVNTKNKLEECFVSVLRIGLMCSTTSPRERIAMNVVVN 700 (717)
Q Consensus 623 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~cl~~~p~~Rps~~eil~ 700 (717)
..+.. ..++.++..+.+++.+||+.||++|||++|+++
T Consensus 232 ---------~~~~~-------------------------------~~~~~~~~~~~~li~~~l~~dp~~Rps~~ell~ 269 (297)
T 3fxz_A 232 ---------GTPEL-------------------------------QNPEKLSAIFRDFLNRCLEMDVEKRGSAKELLQ 269 (297)
T ss_dssp ---------CSCCC-------------------------------SCGGGSCHHHHHHHHHHSCSSTTTSCCHHHHTT
T ss_pred ---------CCCCC-------------------------------CCccccCHHHHHHHHHHccCChhHCcCHHHHhh
Confidence 00000 012233566889999999999999999999986
No 47
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=100.00 E-value=6.1e-40 Score=361.59 Aligned_cols=319 Identities=19% Similarity=0.182 Sum_probs=195.9
Q ss_pred cEEEcCCCcCcCCCCcCCcCCCCCCEEECCCCcccccCCcCCCCCCCCCEEEccCccccccCCccccCCCCCCEEeccCC
Q 005045 13 QDLNLTYNYLSGKIPTNLSHCTELRSFEASVNDFVGQIPNQLSSLTKLEIIGLGGSNLTGNVPAWIGNFSSLKALSLAWN 92 (717)
Q Consensus 13 ~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n 92 (717)
+.++.++++++ .+|..+. ++|+.|+|++|.+++..|..|.++++|++|+|++|.+++..|..|.++++|++|+|++|
T Consensus 14 ~~v~c~~~~l~-~ip~~~~--~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n 90 (477)
T 2id5_A 14 RAVLCHRKRFV-AVPEGIP--TETRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSN 90 (477)
T ss_dssp TEEECCSCCCS-SCCSCCC--TTCSEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSS
T ss_pred CEEEeCCCCcC-cCCCCCC--CCCcEEECCCCccceECHhHccCCCCCCEEECCCCccCEeChhhhhCCccCCEEECCCC
Confidence 46777777777 5665553 56777777777777666777777777777777777777666777777777777777777
Q ss_pred cCcccCChhhhccCCCCeEeccCCCCCCCCCccccCCCCccEEEcccCcccccCCcccccCCCCcceeecccccccccCC
Q 005045 93 NLRGSIPNELGQLSGLGFFTLYGNFISGIIPSSIYNISSIYYFSVTQNQLHGQLPTDVGLTLPNLKIFAGAVNYFTGSIP 172 (717)
Q Consensus 93 ~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~~l~~~~~~~l~~L~~L~l~~n~l~~~~~ 172 (717)
+++...+..|.++++|++|+|++|.+++..+..|.++++|++|+|++|.++ .++...+..+++|+.|++++|.++...+
T Consensus 91 ~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l~~n~l~-~~~~~~~~~l~~L~~L~l~~n~l~~~~~ 169 (477)
T 2id5_A 91 RLKLIPLGVFTGLSNLTKLDISENKIVILLDYMFQDLYNLKSLEVGDNDLV-YISHRAFSGLNSLEQLTLEKCNLTSIPT 169 (477)
T ss_dssp CCCSCCTTSSTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEEECCTTCC-EECTTSSTTCTTCCEEEEESCCCSSCCH
T ss_pred cCCccCcccccCCCCCCEEECCCCccccCChhHccccccCCEEECCCCccc-eeChhhccCCCCCCEEECCCCcCcccCh
Confidence 777555566777777777777777777777777777777777777777776 4444444456666666666666665544
Q ss_pred ccCCCCCCCCEEeccCccccccCCCCccCCCCCCeeeccccccCCcccCchhhhhhhccCCCCCEEEeecCcccCcCc-h
Q 005045 173 VSLSNASNLQVLDFAENGLTGTIPGNFGSLKDLVRLNFDQNELGSREIGDLNFLKFLANCTSLEVLGLARNSFGGEMP-I 251 (717)
Q Consensus 173 ~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~~~p-~ 251 (717)
..|..+++|+.|++++|.+++..+..|..+++|+.|++++|.+.... +.......+|+.|+|++|.++ .+| .
T Consensus 170 ~~l~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~~~~~~~~------~~~~~~~~~L~~L~l~~n~l~-~~~~~ 242 (477)
T 2id5_A 170 EALSHLHGLIVLRLRHLNINAIRDYSFKRLYRLKVLEISHWPYLDTM------TPNCLYGLNLTSLSITHCNLT-AVPYL 242 (477)
T ss_dssp HHHTTCTTCCEEEEESCCCCEECTTCSCSCTTCCEEEEECCTTCCEE------CTTTTTTCCCSEEEEESSCCC-SCCHH
T ss_pred hHhcccCCCcEEeCCCCcCcEeChhhcccCcccceeeCCCCcccccc------CcccccCccccEEECcCCccc-ccCHH
Confidence 55666666666666666666555555555666666666555433221 122222335555555555555 333 2
Q ss_pred hhhhccccccEEecCCCccCCCCCccccCCCCCCEEEccCCcCccccchhhhcCCCCCeEEcccCcCCCCCCcccccccc
Q 005045 252 SIANLSTHLRRLTMGENLMHGNIPVGIGNLVNLNLLGLEGNNLSGSVPEVIGRLNKLEGLGLNVNKFSGLIPSSLGNLTI 331 (717)
Q Consensus 252 ~~~~~~~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~ 331 (717)
.+..+ ++|+.|+|++|.+++..+..|.++++|+.|+|++|++++..|..|.++++|+.|+|++|+++++.+..|..+++
T Consensus 243 ~~~~l-~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~ 321 (477)
T 2id5_A 243 AVRHL-VYLRFLNLSYNPISTIEGSMLHELLRLQEIQLVGGQLAVVEPYAFRGLNYLRVLNVSGNQLTTLEESVFHSVGN 321 (477)
T ss_dssp HHTTC-TTCCEEECCSSCCCEECTTSCTTCTTCCEEECCSSCCSEECTTTBTTCTTCCEEECCSSCCSCCCGGGBSCGGG
T ss_pred HhcCc-cccCeeECCCCcCCccChhhccccccCCEEECCCCccceECHHHhcCcccCCEEECCCCcCceeCHhHcCCCcc
Confidence 33333 35555555555555444555555555555555555555555555555555555555555555555455555555
Q ss_pred cceeeccccccc
Q 005045 332 LTRLWMEENRLE 343 (717)
Q Consensus 332 L~~L~L~~N~l~ 343 (717)
|+.|+|++|++.
T Consensus 322 L~~L~l~~N~l~ 333 (477)
T 2id5_A 322 LETLILDSNPLA 333 (477)
T ss_dssp CCEEECCSSCEE
T ss_pred cCEEEccCCCcc
Confidence 555555555554
No 48
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=100.00 E-value=7.2e-40 Score=361.02 Aligned_cols=341 Identities=18% Similarity=0.159 Sum_probs=301.7
Q ss_pred cceeeCCcc--eecEEEcCCCcCcCCCCcCCcCCCCCCEEECCCCcccccCCcCCCCCCCCCEEEccCccccccCCcccc
Q 005045 2 ELIMIPEHL--MTQDLNLTYNYLSGKIPTNLSHCTELRSFEASVNDFVGQIPNQLSSLTKLEIIGLGGSNLTGNVPAWIG 79 (717)
Q Consensus 2 ~l~~~p~~~--~~~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~ 79 (717)
.++.+|..+ .+++|+|++|++++..|..|.++++|++|+|++|.+++..|..|.++++|++|+|++|.++...+..|.
T Consensus 22 ~l~~ip~~~~~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~ 101 (477)
T 2id5_A 22 RFVAVPEGIPTETRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSNRLKLIPLGVFT 101 (477)
T ss_dssp CCSSCCSCCCTTCSEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCSCCTTSST
T ss_pred CcCcCCCCCCCCCcEEECCCCccceECHhHccCCCCCCEEECCCCccCEeChhhhhCCccCCEEECCCCcCCccCccccc
Confidence 466788766 899999999999988899999999999999999999988899999999999999999999966667789
Q ss_pred CCCCCCEEeccCCcCcccCChhhhccCCCCeEeccCCCCCCCCCccccCCCCccEEEcccCcccccCCcccccCCCCcce
Q 005045 80 NFSSLKALSLAWNNLRGSIPNELGQLSGLGFFTLYGNFISGIIPSSIYNISSIYYFSVTQNQLHGQLPTDVGLTLPNLKI 159 (717)
Q Consensus 80 ~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~~l~~~~~~~l~~L~~ 159 (717)
++++|++|+|++|++++..+..|.++++|++|+|++|.++++.+..|.++++|++|+|++|+++ .++...+..+++|+.
T Consensus 102 ~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~-~~~~~~l~~l~~L~~ 180 (477)
T 2id5_A 102 GLSNLTKLDISENKIVILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCNLT-SIPTEALSHLHGLIV 180 (477)
T ss_dssp TCTTCCEEECTTSCCCEECTTTTTTCTTCCEEEECCTTCCEECTTSSTTCTTCCEEEEESCCCS-SCCHHHHTTCTTCCE
T ss_pred CCCCCCEEECCCCccccCChhHccccccCCEEECCCCccceeChhhccCCCCCCEEECCCCcCc-ccChhHhcccCCCcE
Confidence 9999999999999999888999999999999999999999999999999999999999999998 888888889999999
Q ss_pred eecccccccccCCccCCCCCCCCEEeccCccccccCCCCccCCCCCCeeeccccccCCcccCchhhhhhhccCCCCCEEE
Q 005045 160 FAGAVNYFTGSIPVSLSNASNLQVLDFAENGLTGTIPGNFGSLKDLVRLNFDQNELGSREIGDLNFLKFLANCTSLEVLG 239 (717)
Q Consensus 160 L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~l~~L~~L~ 239 (717)
|++++|.+.+..+..|..+++|++|++++|...+.+|.......+|+.|++++|.++.++ ...+..+++|+.|+
T Consensus 181 L~l~~n~i~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~------~~~~~~l~~L~~L~ 254 (477)
T 2id5_A 181 LRLRHLNINAIRDYSFKRLYRLKVLEISHWPYLDTMTPNCLYGLNLTSLSITHCNLTAVP------YLAVRHLVYLRFLN 254 (477)
T ss_dssp EEEESCCCCEECTTCSCSCTTCCEEEEECCTTCCEECTTTTTTCCCSEEEEESSCCCSCC------HHHHTTCTTCCEEE
T ss_pred EeCCCCcCcEeChhhcccCcccceeeCCCCccccccCcccccCccccEEECcCCcccccC------HHHhcCccccCeeE
Confidence 999999999998899999999999999999888788877777789999999999999887 67889999999999
Q ss_pred eecCcccCcCchhhhhccccccEEecCCCccCCCCCccccCCCCCCEEEccCCcCccccchhhhcCCCCCeEEcccCcCC
Q 005045 240 LARNSFGGEMPISIANLSTHLRRLTMGENLMHGNIPVGIGNLVNLNLLGLEGNNLSGSVPEVIGRLNKLEGLGLNVNKFS 319 (717)
Q Consensus 240 L~~N~l~~~~p~~~~~~~~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~ 319 (717)
|++|.+++..+..+..+ ++|+.|+|++|.+.+..+..|.++++|+.|+|++|++++..+..|..+++|++|+|++|++.
T Consensus 255 Ls~n~l~~~~~~~~~~l-~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~ 333 (477)
T 2id5_A 255 LSYNPISTIEGSMLHEL-LRLQEIQLVGGQLAVVEPYAFRGLNYLRVLNVSGNQLTTLEESVFHSVGNLETLILDSNPLA 333 (477)
T ss_dssp CCSSCCCEECTTSCTTC-TTCCEEECCSSCCSEECTTTBTTCTTCCEEECCSSCCSCCCGGGBSCGGGCCEEECCSSCEE
T ss_pred CCCCcCCccChhhcccc-ccCCEEECCCCccceECHHHhcCcccCCEEECCCCcCceeCHhHcCCCcccCEEEccCCCcc
Confidence 99999996666667766 59999999999999999999999999999999999999877788899999999999999998
Q ss_pred CCCCcccccccccceeecccccccccCCcCcc
Q 005045 320 GLIPSSLGNLTILTRLWMEENRLEGSIPPSLG 351 (717)
Q Consensus 320 ~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~ 351 (717)
..-+ ...-...+..+.+.++...+..|..+.
T Consensus 334 c~c~-~~~~~~~~~~~~~~~~~~~C~~p~~~~ 364 (477)
T 2id5_A 334 CDCR-LLWVFRRRWRLNFNRQQPTCATPEFVQ 364 (477)
T ss_dssp CSGG-GHHHHTTTTSSCCTTCCCBEEESGGGT
T ss_pred Cccc-hHhHHhhhhccccCccCceeCCchHHc
Confidence 5421 111122333455555555554554443
No 49
>3fe3_A MAP/microtubule affinity-regulating kinase 3; serine/threonine protein kinase, MARK;PAR-1, UBA domai TAK1;P78;MARK3, ATP-binding; 1.90A {Homo sapiens} PDB: 2qnj_A 1y8g_A* 1zmw_A 1zmu_A 1zmv_A 2wzj_A 2r0i_A 2hak_A 3iec_A
Probab=100.00 E-value=3.4e-41 Score=351.05 Aligned_cols=254 Identities=22% Similarity=0.323 Sum_probs=202.1
Q ss_pred cccccccccccccccccCcccccceEEEEe-CCCchhhhHHhHhh--hhhHHHHHHHHHHHHhcCCCCceeEEEEeeccc
Q 005045 381 YSDISKSTDNFSKENLIGTGSFGSVYKGTL-GDGTIVAIKVLKLQ--QQGALKSFIDECNALKSTRHRNILRVITACSSV 457 (717)
Q Consensus 381 ~~~~~~~~~~y~~~~~ig~g~~g~v~~~~~-~~~~~vavK~~~~~--~~~~~~~~~~e~~~l~~l~h~ni~~~~~~~~~~ 457 (717)
.++.....++|++.+.||+|+||.||+|.+ .+|+.||+|++... .....+++.+|+++++.++||||+++++++
T Consensus 7 ~~~~~~~~~~y~~~~~lG~G~~g~V~~a~~~~~~~~vaiK~~~~~~~~~~~~~~~~~E~~~l~~l~hpnIv~l~~~~--- 83 (328)
T 3fe3_A 7 CADEQPHIGNYRLLKTIGKGNFAKVKLARHILTGREVAIKIIDKTQLNPTSLQKLFREVRIMKILNHPNIVKLFEVI--- 83 (328)
T ss_dssp ----CCEETTEEEEEEEEECSSEEEEEEEETTTCCEEEEEEEEGGGSCHHHHHHHHHHHHHHHHCCCTTBCCEEEEE---
T ss_pred ccccCCccCCEEEEEEEeeCCCEEEEEEEECCCCCEEEEEEEEhhcCCHHHHHHHHHHHHHHHhCCCCCEeeEEEEE---
Confidence 345556678999999999999999999996 48999999998654 334567788999999999999999999995
Q ss_pred cCCCCceEEEEEecCCCCChhhhccCCCCCcccccccCHHHHHHHHHHHHHHHHHHHhcCCCCeeecCCCCCCEEeCCCC
Q 005045 458 DLEGNDFKALVFEFMSNGNLDQWLHPSPAEHYQFKKLSVIQRLNIAIDVASALDYLHHHCDTPIAHCDLKPSNVLLDKDM 537 (717)
Q Consensus 458 ~~~~~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~dlkp~NIll~~~~ 537 (717)
...+..++||||+++++|.+++... +.+++..+..++.||+.||+|||+. +|+||||||+||+++.++
T Consensus 84 --~~~~~~~lv~e~~~~~~L~~~l~~~-------~~l~~~~~~~~~~qi~~al~~lH~~---~ivHrDlkp~NIll~~~~ 151 (328)
T 3fe3_A 84 --ETEKTLYLIMEYASGGEVFDYLVAH-------GRMKEKEARSKFRQIVSAVQYCHQK---RIVHRDLKAENLLLDADM 151 (328)
T ss_dssp --ECSSEEEEEECCCTTCBHHHHHHHH-------CCCCHHHHHHHHHHHHHHHHHHHHT---TCCCSCCCGGGEEECTTS
T ss_pred --EECCEEEEEEECCCCCcHHHHHHHc-------CCCCHHHHHHHHHHHHHHHHHHHHC---CEeccCCCHHHEEEcCCC
Confidence 4456899999999999999998644 5689999999999999999999998 999999999999999999
Q ss_pred ceEEeeeccchhcccccCCCCCCcceeecccccccccCCCccCCC-C-CcccchhhHHHHHHHHHhCCCCCCCCCCCchh
Q 005045 538 TAHVGDFGLAKFLFEISDNPSKNQTVSIGLKGSIGYIPPEHMNGQ-V-SILGDIYSYGILLLEMFTGKRPTGDMFKDDFS 615 (717)
Q Consensus 538 ~~kl~Dfg~~~~~~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~-~-~~~sDvwslG~vl~elltg~~p~~~~~~~~~~ 615 (717)
.+||+|||++..... ........||+.|+|||++.+. + +.++||||+||++|+|++|..||.......
T Consensus 152 ~~kl~DFG~a~~~~~--------~~~~~~~~gt~~y~aPE~~~~~~~~~~~~DiwslG~il~ell~g~~pf~~~~~~~-- 221 (328)
T 3fe3_A 152 NIKIADFGFSNEFTV--------GGKLDAFCGAPPYAAPELFQGKKYDGPEVDVWSLGVILYTLVSGSLPFDGQNLKE-- 221 (328)
T ss_dssp CEEECSTTCCGGGSS--------SCGGGTTSSSGGGCCHHHHHTCCCCSHHHHHHHHHHHHHHHHHSSCSSCCSSHHH--
T ss_pred CEEEeeccCceecCC--------CCccccccCCcceeCcccccCCCcCCchhhhhhhHHHHHHHHhCCCCCCCCCHHH--
Confidence 999999999976521 1122345699999999997654 3 589999999999999999999997542111
Q ss_pred hhHHHHhcCChhhhhhcCCCCCCCCCCcHHHHHHHHHHHHHHhhhhhhhcchhhhHHHHHHHHHHhhccCCCCcCCCCCH
Q 005045 616 IHMFVSMALPDHVMDILDPSMPLDEENDEEQIEEVIEEKEMMIHIDLEVNTKNKLEECFVSVLRIGLMCSTTSPRERIAM 695 (717)
Q Consensus 616 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~cl~~~p~~Rps~ 695 (717)
..... ....... +..++..+.+++.+||+.||++|||+
T Consensus 222 ~~~~i-----------~~~~~~~-------------------------------p~~~s~~~~~li~~~L~~dP~~R~t~ 259 (328)
T 3fe3_A 222 LRERV-----------LRGKYRI-------------------------------PFYMSTDCENLLKRFLVLNPIKRGTL 259 (328)
T ss_dssp HHHHH-----------HHCCCCC-------------------------------CTTSCHHHHHHHHHHCCSSTTTSCCH
T ss_pred HHHHH-----------HhCCCCC-------------------------------CCCCCHHHHHHHHHHCCCChhHCcCH
Confidence 11110 0000000 01114457789999999999999999
Q ss_pred HHHHHH
Q 005045 696 NVVVNN 701 (717)
Q Consensus 696 ~eil~~ 701 (717)
+|+++.
T Consensus 260 ~eil~h 265 (328)
T 3fe3_A 260 EQIMKD 265 (328)
T ss_dssp HHHTTC
T ss_pred HHHhcC
Confidence 999863
No 50
>2nru_A Interleukin-1 receptor-associated kinase 4; inhibitor, IRAK, transferase; HET: TPO SEP T12; 2.00A {Homo sapiens} PDB: 2nry_A* 2oib_A* 2oic_A* 2oid_A* 2o8y_A*
Probab=100.00 E-value=1.8e-40 Score=343.83 Aligned_cols=283 Identities=26% Similarity=0.435 Sum_probs=220.5
Q ss_pred CCCCcccccccccccccc------cccCcccccceEEEEeCCCchhhhHHhHhh----hhhHHHHHHHHHHHHhcCCCCc
Q 005045 377 SGMSYSDISKSTDNFSKE------NLIGTGSFGSVYKGTLGDGTIVAIKVLKLQ----QQGALKSFIDECNALKSTRHRN 446 (717)
Q Consensus 377 ~~~s~~~~~~~~~~y~~~------~~ig~g~~g~v~~~~~~~~~~vavK~~~~~----~~~~~~~~~~e~~~l~~l~h~n 446 (717)
..|++.++...+++|... ++||+|+||.||+|.. +++.||+|++... .....+.+.+|++++++++|||
T Consensus 13 ~~~~~~~l~~~~~~f~~~~~~~~~~~lg~G~~g~Vy~~~~-~~~~vavK~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~~ 91 (307)
T 2nru_A 13 HSFSFYELKNVTNNFDERPISVGGNKMGEGGFGVVYKGYV-NNTTVAVKKLAAMVDITTEELKQQFDQEIKVMAKCQHEN 91 (307)
T ss_dssp EECCHHHHHHHTTTTCCSBTTTTCCEEEECSSEEEEEEES-SSCEEEEEEECCCTTSCTTTHHHHHHHHHHHHHHCCCTT
T ss_pred CcccHHHHHHHHcccccccccccCCccccCCCeEEEEEEE-CCceEEEEEEecccCcchHHHHHHHHHHHHHHHhcCCCC
Confidence 346666667776666655 8999999999999997 5788999987642 2344678899999999999999
Q ss_pred eeEEEEeeccccCCCCceEEEEEecCCCCChhhhccCCCCCcccccccCHHHHHHHHHHHHHHHHHHHhcCCCCeeecCC
Q 005045 447 ILRVITACSSVDLEGNDFKALVFEFMSNGNLDQWLHPSPAEHYQFKKLSVIQRLNIAIDVASALDYLHHHCDTPIAHCDL 526 (717)
Q Consensus 447 i~~~~~~~~~~~~~~~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~dl 526 (717)
|+++++++ ...+..++||||+++++|.+++.... ....+++..+..++.||+.||+|||+. +++||||
T Consensus 92 i~~~~~~~-----~~~~~~~lv~e~~~~~~L~~~l~~~~----~~~~~~~~~~~~i~~~i~~~l~~lH~~---~i~H~dl 159 (307)
T 2nru_A 92 LVELLGFS-----SDGDDLCLVYVYMPNGSLLDRLSCLD----GTPPLSWHMRCKIAQGAANGINFLHEN---HHIHRDI 159 (307)
T ss_dssp BCCEEEEE-----CSSSSCEEEEECCTTCBHHHHHHTGG----GCCCCCHHHHHHHHHHHHHHHHHHHHT---TEECSCC
T ss_pred eEEEEEEE-----ecCCceEEEEEecCCCcHHHHHHhcc----CCCCCCHHHHHHHHHHHHHHHHHHhcC---CeecCCC
Confidence 99999995 34457899999999999999987432 114689999999999999999999998 9999999
Q ss_pred CCCCEEeCCCCceEEeeeccchhcccccCCCCCCcceeecccccccccCCCccCCCCCcccchhhHHHHHHHHHhCCCCC
Q 005045 527 KPSNVLLDKDMTAHVGDFGLAKFLFEISDNPSKNQTVSIGLKGSIGYIPPEHMNGQVSILGDIYSYGILLLEMFTGKRPT 606 (717)
Q Consensus 527 kp~NIll~~~~~~kl~Dfg~~~~~~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~sDvwslG~vl~elltg~~p~ 606 (717)
||+||+++.++.+||+|||.+...... ..........|++.|+|||++.+.++.++|||||||++|+|++|..||
T Consensus 160 kp~Nili~~~~~~kl~Dfg~~~~~~~~-----~~~~~~~~~~g~~~y~aPE~~~~~~~~~~Dv~slG~il~~l~~g~~p~ 234 (307)
T 2nru_A 160 KSANILLDEAFTAKISDFGLARASEKF-----AQTVMTSRIVGTTAYMAPEALRGEITPKSDIYSFGVVLLEIITGLPAV 234 (307)
T ss_dssp CGGGEEECTTCCEEECCCTTCEECCSC-----SSCEECSSCCSCGGGCCHHHHTTEECTHHHHHHHHHHHHHHHHCCCSB
T ss_pred CHHHEEEcCCCcEEEeecccccccccc-----cccccccccCCCcCcCChHHhcCCCCccchhHHHHHHHHHHHHCCCCc
Confidence 999999999999999999998765211 111222345689999999999888999999999999999999999999
Q ss_pred CCCCCCchhhhHH-HHhcCChhhhhhcCCCCCCCCCCcHHHHHHHHHHHHHHhhhhhhhcchhhhHHHHHHHHHHhhccC
Q 005045 607 GDMFKDDFSIHMF-VSMALPDHVMDILDPSMPLDEENDEEQIEEVIEEKEMMIHIDLEVNTKNKLEECFVSVLRIGLMCS 685 (717)
Q Consensus 607 ~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~cl 685 (717)
............. ........+.+.+++.+.. ....++..+.+++.+||
T Consensus 235 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------------------------~~~~~~~~l~~li~~cl 284 (307)
T 2nru_A 235 DEHREPQLLLDIKEEIEDEEKTIEDYIDKKMND------------------------------ADSTSVEAMYSVASQCL 284 (307)
T ss_dssp CTTBSSSBTTHHHHHHHTTSCCHHHHSCSSCSC------------------------------CCHHHHHHHHHHHHHHT
T ss_pred ccCcchHHHHHHHHHhhhhhhhhhhhccccccc------------------------------cchHHHHHHHHHHHHHc
Confidence 8754332211111 0111122234444444322 22445778899999999
Q ss_pred CCCcCCCCCHHHHHHHHHHHHH
Q 005045 686 TTSPRERIAMNVVVNNLKTIRN 707 (717)
Q Consensus 686 ~~~p~~Rps~~eil~~l~~i~~ 707 (717)
+.+|++|||++||++.|+++.+
T Consensus 285 ~~~p~~Rps~~~l~~~L~~l~~ 306 (307)
T 2nru_A 285 HEKKNKRPDIKKVQQLLQEMTA 306 (307)
T ss_dssp CSSTTTSCCHHHHHHHHHHHC-
T ss_pred CCCcccCcCHHHHHHHHHHHhc
Confidence 9999999999999999998864
No 51
>3kul_A Ephrin type-A receptor 8; ATP-binding, kinase, nucleotide-binding, transfera phosphorylation, transmembrane, tyrosine-protein kinase; HET: PTR; 2.15A {Homo sapiens}
Probab=100.00 E-value=5.7e-41 Score=349.85 Aligned_cols=265 Identities=25% Similarity=0.396 Sum_probs=207.2
Q ss_pred ccccccccccccCcccccceEEEEeC----CCchhhhHHhHhh-hhhHHHHHHHHHHHHhcCCCCceeEEEEeeccccCC
Q 005045 386 KSTDNFSKENLIGTGSFGSVYKGTLG----DGTIVAIKVLKLQ-QQGALKSFIDECNALKSTRHRNILRVITACSSVDLE 460 (717)
Q Consensus 386 ~~~~~y~~~~~ig~g~~g~v~~~~~~----~~~~vavK~~~~~-~~~~~~~~~~e~~~l~~l~h~ni~~~~~~~~~~~~~ 460 (717)
...++|++.+.||+|+||.||.|.+. .+..||+|++... .....+.+.+|++++++++||||+++++++ .
T Consensus 46 ~~~~~y~i~~~lG~G~~g~V~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~-----~ 120 (325)
T 3kul_A 46 IEASRIHIEKIIGSGDSGEVCYGRLRVPGQRDVPVAIKALKAGYTERQRRDFLSEASIMGQFDHPNIIRLEGVV-----T 120 (325)
T ss_dssp CCGGGEEEEEEEEETTTEEEEEEEECCTTSCCEEEEEEEECTTCCHHHHHHHHHHHHHHTTCCCTTBCCEEEEE-----C
T ss_pred cChhHeEEeeEEEeCCCcEEEEEEEecCCCCCceEEEEecCCCCCHHHHHHHHHHHHHHHhCCCCCCCcEEEEE-----E
Confidence 34679999999999999999999964 3445999998754 334567889999999999999999999995 3
Q ss_pred CCceEEEEEecCCCCChhhhccCCCCCcccccccCHHHHHHHHHHHHHHHHHHHhcCCCCeeecCCCCCCEEeCCCCceE
Q 005045 461 GNDFKALVFEFMSNGNLDQWLHPSPAEHYQFKKLSVIQRLNIAIDVASALDYLHHHCDTPIAHCDLKPSNVLLDKDMTAH 540 (717)
Q Consensus 461 ~~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~dlkp~NIll~~~~~~k 540 (717)
+.+..++||||+++++|.+++.... ..+++..+..++.||+.||+|||+. +|+||||||+||+++.++.+|
T Consensus 121 ~~~~~~lv~e~~~~~~L~~~l~~~~------~~~~~~~~~~i~~qi~~~L~~LH~~---~ivH~Dlkp~NIll~~~~~~k 191 (325)
T 3kul_A 121 RGRLAMIVTEYMENGSLDTFLRTHD------GQFTIMQLVGMLRGVGAGMRYLSDL---GYVHRDLAARNVLVDSNLVCK 191 (325)
T ss_dssp GGGCCEEEEECCTTCBHHHHHHTTT------TCSCHHHHHHHHHHHHHHHHHHHHT---TEECSCCSGGGEEECTTCCEE
T ss_pred eCCccEEEeeCCCCCcHHHHHHhcc------cCCCHHHHHHHHHHHHHHHHHHHHC---CeeCCCCCcceEEECCCCCEE
Confidence 4558899999999999999996543 5689999999999999999999998 999999999999999999999
Q ss_pred EeeeccchhcccccCCCCCCcceeecccccccccCCCccCC-CCCcccchhhHHHHHHHHHh-CCCCCCCCCCCchhhhH
Q 005045 541 VGDFGLAKFLFEISDNPSKNQTVSIGLKGSIGYIPPEHMNG-QVSILGDIYSYGILLLEMFT-GKRPTGDMFKDDFSIHM 618 (717)
Q Consensus 541 l~Dfg~~~~~~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~-~~~~~sDvwslG~vl~ellt-g~~p~~~~~~~~~~~~~ 618 (717)
|+|||.+...... ...........+|+.|+|||++.+ .++.++|||||||++|+|++ |..||....... ...
T Consensus 192 l~Dfg~a~~~~~~----~~~~~~~~~~~~t~~y~aPE~~~~~~~~~~~Di~slG~il~ell~~g~~p~~~~~~~~--~~~ 265 (325)
T 3kul_A 192 VSDFGLSRVLEDD----PDAAYTTTGGKIPIRWTAPEAIAFRTFSSASDVWSFGVVMWEVLAYGERPYWNMTNRD--VIS 265 (325)
T ss_dssp ECCCSSCEECC--------CCEECC---CCGGGSCHHHHHHCEECHHHHHHHHHHHHHHHHTTSCCTTTTSCHHH--HHH
T ss_pred ECCCCcccccccC----ccceeeccCCCCcccccCHhHhcCCCCCcHHHHHHHHHHHHHHHcCCCCCcccCCHHH--HHH
Confidence 9999999865221 111222233446778999999754 58999999999999999999 999996542221 111
Q ss_pred HHHhcCChhhhhhcCCCCCCCCCCcHHHHHHHHHHHHHHhhhhhhhcchhhhHHHHHHHHHHhhccCCCCcCCCCCHHHH
Q 005045 619 FVSMALPDHVMDILDPSMPLDEENDEEQIEEVIEEKEMMIHIDLEVNTKNKLEECFVSVLRIGLMCSTTSPRERIAMNVV 698 (717)
Q Consensus 619 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~cl~~~p~~Rps~~ei 698 (717)
.... ..... .+..++..+.+++.+||+.+|++|||++||
T Consensus 266 ~~~~--------~~~~~---------------------------------~~~~~~~~l~~li~~~l~~dp~~Rps~~ei 304 (325)
T 3kul_A 266 SVEE--------GYRLP---------------------------------APMGCPHALHQLMLDCWHKDRAQRPRFSQI 304 (325)
T ss_dssp HHHT--------TCCCC---------------------------------CCTTCCHHHHHHHHHHTCSSGGGSCCHHHH
T ss_pred HHHc--------CCCCC---------------------------------CCCCcCHHHHHHHHHHccCChhhCcCHHHH
Confidence 1100 00000 112235678899999999999999999999
Q ss_pred HHHHHHHHHHHHh
Q 005045 699 VNNLKTIRNCFLE 711 (717)
Q Consensus 699 l~~l~~i~~~~~~ 711 (717)
++.|+.+.+....
T Consensus 305 l~~L~~l~~~~~~ 317 (325)
T 3kul_A 305 VSVLDALIRSPES 317 (325)
T ss_dssp HHHHHHHHHSCC-
T ss_pred HHHHHHHHhCccc
Confidence 9999999865443
No 52
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=100.00 E-value=6.3e-39 Score=360.68 Aligned_cols=323 Identities=19% Similarity=0.236 Sum_probs=274.6
Q ss_pred ceecEEEcCCCcCcCCCCcCCcCCCCCCEEECCCCcccccCCcCCCCCCCCCEEEccCcccccc-CCccccCCCCCCEEe
Q 005045 10 LMTQDLNLTYNYLSGKIPTNLSHCTELRSFEASVNDFVGQIPNQLSSLTKLEIIGLGGSNLTGN-VPAWIGNFSSLKALS 88 (717)
Q Consensus 10 ~~~~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~-~p~~~~~l~~L~~L~ 88 (717)
.++++|+|++|++++..|++|..+++|++|+|++|.++ .+|.. .+++|++|+|++|.+++. .|..|+++++|++|+
T Consensus 76 ~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~-~lp~~--~l~~L~~L~Ls~N~l~~l~~p~~~~~l~~L~~L~ 152 (562)
T 3a79_B 76 SELRVLRLSHNRIRSLDFHVFLFNQDLEYLDVSHNRLQ-NISCC--PMASLRHLDLSFNDFDVLPVCKEFGNLTKLTFLG 152 (562)
T ss_dssp TTCCEEECCSCCCCEECTTTTTTCTTCCEEECTTSCCC-EECSC--CCTTCSEEECCSSCCSBCCCCGGGGGCTTCCEEE
T ss_pred CCccEEECCCCCCCcCCHHHhCCCCCCCEEECCCCcCC-ccCcc--ccccCCEEECCCCCccccCchHhhcccCcccEEe
Confidence 38999999999999988999999999999999999999 67765 899999999999999963 468999999999999
Q ss_pred ccCCcCcccCChhhhccCCC--CeEeccCCCC--CCCCCccccCCC----------------------------------
Q 005045 89 LAWNNLRGSIPNELGQLSGL--GFFTLYGNFI--SGIIPSSIYNIS---------------------------------- 130 (717)
Q Consensus 89 L~~n~l~~~~~~~~~~l~~L--~~L~L~~N~i--~~~~~~~~~~l~---------------------------------- 130 (717)
|++|++++ ..|..+++| ++|+|++|.+ ++..|..|..+.
T Consensus 153 L~~n~l~~---~~~~~l~~L~L~~L~L~~n~l~~~~~~~~~l~~l~~~~l~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~ 229 (562)
T 3a79_B 153 LSAAKFRQ---LDLLPVAHLHLSCILLDLVSYHIKGGETESLQIPNTTVLHLVFHPNSLFSVQVNMSVNALGHLQLSNIK 229 (562)
T ss_dssp EECSBCCT---TTTGGGTTSCEEEEEEEESSCCCCSSSCCEEEECCEEEEEEEECSSSCCCCCCEEEESSEEEEEEEEEE
T ss_pred cCCCcccc---CchhhhhhceeeEEEeecccccccccCcccccccCcceEEEEecCccchhhhhhhcccccceEEEeccc
Confidence 99999985 346666666 9999999999 777787777654
Q ss_pred -----------------------------------------------CccEEEcccCcccccCCccccc----CC-----
Q 005045 131 -----------------------------------------------SIYYFSVTQNQLHGQLPTDVGL----TL----- 154 (717)
Q Consensus 131 -----------------------------------------------~L~~L~L~~N~l~~~l~~~~~~----~l----- 154 (717)
+|++|++++|.++|.+|..+|. .+
T Consensus 230 ~n~~~~~~l~~~~~~l~~l~~L~~L~L~~~~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~ip~~~~~~~~~~L~~L~~ 309 (562)
T 3a79_B 230 LNDENCQRLMTFLSELTRGPTLLNVTLQHIETTWKCSVKLFQFFWPRPVEYLNIYNLTITERIDREEFTYSETALKSLMI 309 (562)
T ss_dssp CCSTTHHHHHHHHHHHHSCSSCEEEEEEEEEECHHHHHHHHHHHTTSSEEEEEEEEEEECSCCCCCCCCCCSCSCCEEEE
T ss_pred ccccccchHHHHHHHHhccCcceEEEecCCcCcHHHHHHHHHhhhcccccEEEEeccEeeccccchhhhcccccchheeh
Confidence 7888888889988888877641 22
Q ss_pred ---------------------CCcceeecccccccccCCccCCCCCCCCEEeccCccccccCCCCccCCCCCCeeecccc
Q 005045 155 ---------------------PNLKIFAGAVNYFTGSIPVSLSNASNLQVLDFAENGLTGTIPGNFGSLKDLVRLNFDQN 213 (717)
Q Consensus 155 ---------------------~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N 213 (717)
.+|+.|++++|.+.... ....+++|++|++++|.+++..|..|..+++|+.|++++|
T Consensus 310 ~~~~~~~~~~p~~~~~~~~~~~~L~~L~l~~n~~~~~~--~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N 387 (562)
T 3a79_B 310 EHVKNQVFLFSKEALYSVFAEMNIKMLSISDTPFIHMV--CPPSPSSFTFLNFTQNVFTDSVFQGCSTLKRLQTLILQRN 387 (562)
T ss_dssp EEEEECCCSSCHHHHHHHHHTCCCSEEEEESSCCCCCC--CCSSCCCCCEEECCSSCCCTTTTTTCCSCSSCCEEECCSS
T ss_pred hhcccceeecChhhhhhhhccCcceEEEccCCCccccc--CccCCCCceEEECCCCccccchhhhhcccCCCCEEECCCC
Confidence 34677777777765322 1278899999999999999889999999999999999999
Q ss_pred ccCCcccCchhhhhhhccCCCCCEEEeecCcccCcCchhhhhccccccEEecCCCccCCCCCccccCCCCCCEEEccCCc
Q 005045 214 ELGSREIGDLNFLKFLANCTSLEVLGLARNSFGGEMPISIANLSTHLRRLTMGENLMHGNIPVGIGNLVNLNLLGLEGNN 293 (717)
Q Consensus 214 ~l~~~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~~~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~L~~N~ 293 (717)
+++.++. .+..+.++++|+.|++++|.+++.+|...+...++|++|++++|.+++..|..+. ++|+.|+|++|+
T Consensus 388 ~l~~~~~----~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~--~~L~~L~L~~N~ 461 (562)
T 3a79_B 388 GLKNFFK----VALMTKNMSSLETLDVSLNSLNSHAYDRTCAWAESILVLNLSSNMLTGSVFRCLP--PKVKVLDLHNNR 461 (562)
T ss_dssp CCCBTTH----HHHTTTTCTTCCEEECTTSCCBSCCSSCCCCCCTTCCEEECCSSCCCGGGGSSCC--TTCSEEECCSSC
T ss_pred CcCCccc----chhhhcCCCCCCEEECCCCcCCCccChhhhcCcccCCEEECCCCCCCcchhhhhc--CcCCEEECCCCc
Confidence 9998651 2467899999999999999999757776554447999999999999877666654 799999999999
Q ss_pred CccccchhhhcCCCCCeEEcccCcCCCCCCcccccccccceeecccccccccCC
Q 005045 294 LSGSVPEVIGRLNKLEGLGLNVNKFSGLIPSSLGNLTILTRLWMEENRLEGSIP 347 (717)
Q Consensus 294 l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p 347 (717)
|+ .+|..+..+++|++|+|++|+++++++..|..+++|+.|+|++|++.+..+
T Consensus 462 l~-~ip~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~l~~N~~~c~c~ 514 (562)
T 3a79_B 462 IM-SIPKDVTHLQALQELNVASNQLKSVPDGVFDRLTSLQYIWLHDNPWDCTCP 514 (562)
T ss_dssp CC-CCCTTTTSSCCCSEEECCSSCCCCCCTTSTTTCTTCCCEECCSCCBCCCHH
T ss_pred Cc-ccChhhcCCCCCCEEECCCCCCCCCCHHHHhcCCCCCEEEecCCCcCCCcc
Confidence 99 677777799999999999999997665569999999999999999986544
No 53
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=100.00 E-value=3e-39 Score=360.18 Aligned_cols=324 Identities=23% Similarity=0.305 Sum_probs=276.8
Q ss_pred cceecEEEcCCCcCcCCCCcCCcCCCCCCEEECCCCcccccCCcCCCCCCCCCEEEccCccccc-cCCccccCCCCCCEE
Q 005045 9 HLMTQDLNLTYNYLSGKIPTNLSHCTELRSFEASVNDFVGQIPNQLSSLTKLEIIGLGGSNLTG-NVPAWIGNFSSLKAL 87 (717)
Q Consensus 9 ~~~~~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~-~~p~~~~~l~~L~~L 87 (717)
..++++|+|++|++++..|..|+.+++|++|+|++|.++ .+|.. .+++|++|+|++|.+++ .+|..|+++++|++|
T Consensus 44 l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~-~lp~~--~l~~L~~L~L~~N~l~~~~~p~~~~~l~~L~~L 120 (520)
T 2z7x_B 44 LSKLRILIISHNRIQYLDISVFKFNQELEYLDLSHNKLV-KISCH--PTVNLKHLDLSFNAFDALPICKEFGNMSQLKFL 120 (520)
T ss_dssp CTTCCEEECCSSCCCEEEGGGGTTCTTCCEEECCSSCCC-EEECC--CCCCCSEEECCSSCCSSCCCCGGGGGCTTCCEE
T ss_pred cccccEEecCCCccCCcChHHhhcccCCCEEecCCCcee-ecCcc--ccCCccEEeccCCccccccchhhhccCCcceEE
Confidence 348999999999999888999999999999999999999 57765 89999999999999996 468899999999999
Q ss_pred eccCCcCcccCChhhhccCCC--CeEeccCCCC--CCCCCccccCCC---------------------------------
Q 005045 88 SLAWNNLRGSIPNELGQLSGL--GFFTLYGNFI--SGIIPSSIYNIS--------------------------------- 130 (717)
Q Consensus 88 ~L~~n~l~~~~~~~~~~l~~L--~~L~L~~N~i--~~~~~~~~~~l~--------------------------------- 130 (717)
+|++|+|++ ..|..+++| +.|+|++|.+ .+..|..|..+.
T Consensus 121 ~L~~n~l~~---~~~~~l~~L~L~~L~l~~n~l~~~~~~~~~l~~l~~~~l~l~l~~n~~~~~~~~~~~~~l~~L~~L~l 197 (520)
T 2z7x_B 121 GLSTTHLEK---SSVLPIAHLNISKVLLVLGETYGEKEDPEGLQDFNTESLHIVFPTNKEFHFILDVSVKTVANLELSNI 197 (520)
T ss_dssp EEEESSCCG---GGGGGGTTSCEEEEEEEECTTTTSSCCTTTTTTCCEEEEEEECCSSSCCCCCCCCCCTTCSEEEECCE
T ss_pred EecCcccch---hhccccccceeeEEEeecccccccccccccccccccceEEEEeccCcchhhhhhhhhhcccceeeccc
Confidence 999999985 568888888 9999999999 667777776643
Q ss_pred --------------------------------------------------CccEEEcccCcccccCCcccc----cCCCC
Q 005045 131 --------------------------------------------------SIYYFSVTQNQLHGQLPTDVG----LTLPN 156 (717)
Q Consensus 131 --------------------------------------------------~L~~L~L~~N~l~~~l~~~~~----~~l~~ 156 (717)
+|++|++++|+++|.+|..++ ..+++
T Consensus 198 ~~n~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~~~l~~ 277 (520)
T 2z7x_B 198 KCVLEDNKCSYFLSILAKLQTNPKLSNLTLNNIETTWNSFIRILQLVWHTTVWYFSISNVKLQGQLDFRDFDYSGTSLKA 277 (520)
T ss_dssp EECCSTTTTHHHHHHHHGGGGCTTCCEEEEEEEEEEHHHHHHHHHHHHTSSCSEEEEEEEEEESCCCCCCCCCCSCCCCE
T ss_pred cccccccccceeecchhhhccccchhhccccccccCHHHHHHHHHHhhhCcccEEEeecccccCccccchhhcccccCce
Confidence 788888888888888888774 45666
Q ss_pred cceeecccccccccCC-------------------------cc-CCCCCCCCEEeccCccccccCCCCccCCCCCCeeec
Q 005045 157 LKIFAGAVNYFTGSIP-------------------------VS-LSNASNLQVLDFAENGLTGTIPGNFGSLKDLVRLNF 210 (717)
Q Consensus 157 L~~L~l~~n~l~~~~~-------------------------~~-~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l 210 (717)
|+.+++++|.+ .+| .. +..+++|++|++++|++++..|..+..+++|+.|++
T Consensus 278 L~~l~l~~n~~--~~p~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L 355 (520)
T 2z7x_B 278 LSIHQVVSDVF--GFPQSYIYEIFSNMNIKNFTVSGTRMVHMLCPSKISPFLHLDFSNNLLTDTVFENCGHLTELETLIL 355 (520)
T ss_dssp EEEEEEEECCC--CSCTHHHHHHHHTCCCSEEEEESSCCCCCCCCSSCCCCCEEECCSSCCCTTTTTTCCCCSSCCEEEC
T ss_pred eEeccccccce--ecchhhhhcccccCceeEEEcCCCccccccchhhCCcccEEEeECCccChhhhhhhccCCCCCEEEc
Confidence 66666666655 122 11 268899999999999999889999999999999999
Q ss_pred cccccCCcccCchhhhhhhccCCCCCEEEeecCcccCcCchhhhhccccccEEecCCCccCCCCCccccCCCCCCEEEcc
Q 005045 211 DQNELGSREIGDLNFLKFLANCTSLEVLGLARNSFGGEMPISIANLSTHLRRLTMGENLMHGNIPVGIGNLVNLNLLGLE 290 (717)
Q Consensus 211 ~~N~l~~~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~~~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~L~ 290 (717)
++|+++.++ ..+..+..+++|++|++++|.+++.+|...+...++|++|++++|.+++..|..+. ++|+.|+|+
T Consensus 356 ~~N~l~~l~----~~~~~~~~l~~L~~L~Ls~N~l~~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~--~~L~~L~Ls 429 (520)
T 2z7x_B 356 QMNQLKELS----KIAEMTTQMKSLQQLDISQNSVSYDEKKGDCSWTKSLLSLNMSSNILTDTIFRCLP--PRIKVLDLH 429 (520)
T ss_dssp CSSCCCBHH----HHHHHHTTCTTCCEEECCSSCCBCCGGGCSCCCCTTCCEEECCSSCCCGGGGGSCC--TTCCEEECC
T ss_pred cCCccCccc----cchHHHhhCCCCCEEECCCCcCCcccccchhccCccCCEEECcCCCCCcchhhhhc--ccCCEEECC
Confidence 999998753 12567899999999999999999768876444446999999999999877777665 799999999
Q ss_pred CCcCccccchhhhcCCCCCeEEcccCcCCCCCCcccccccccceeecccccccccCC
Q 005045 291 GNNLSGSVPEVIGRLNKLEGLGLNVNKFSGLIPSSLGNLTILTRLWMEENRLEGSIP 347 (717)
Q Consensus 291 ~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p 347 (717)
+|+++ .+|..+..+++|++|+|++|+++++.+..|..+++|++|+|++|++++..+
T Consensus 430 ~N~l~-~ip~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~l~~N~~~c~c~ 485 (520)
T 2z7x_B 430 SNKIK-SIPKQVVKLEALQELNVASNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP 485 (520)
T ss_dssp SSCCC-CCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCBCCCHH
T ss_pred CCccc-ccchhhhcCCCCCEEECCCCcCCccCHHHhccCCcccEEECcCCCCcccCC
Confidence 99999 788888899999999999999997655569999999999999999986543
No 54
>3zgw_A Maternal embryonic leucine zipper kinase; transferase; HET: ANP; 2.60A {Homo sapiens}
Probab=100.00 E-value=7.1e-41 Score=350.50 Aligned_cols=254 Identities=26% Similarity=0.337 Sum_probs=196.2
Q ss_pred cccccccccccccccCcccccceEEEEeC-CCchhhhHHhHhhh-hhHHHHHHHHHHHHhcCCCCceeEEEEeeccccCC
Q 005045 383 DISKSTDNFSKENLIGTGSFGSVYKGTLG-DGTIVAIKVLKLQQ-QGALKSFIDECNALKSTRHRNILRVITACSSVDLE 460 (717)
Q Consensus 383 ~~~~~~~~y~~~~~ig~g~~g~v~~~~~~-~~~~vavK~~~~~~-~~~~~~~~~e~~~l~~l~h~ni~~~~~~~~~~~~~ 460 (717)
+.....++|++.+.||+|+||.||+|++. +|+.||+|++.... ......+.+|++++++++||||+++++++ .
T Consensus 4 ~~~~l~~~y~i~~~lG~G~~g~V~~a~~~~~~~~vAiK~~~~~~~~~~~~~~~~Ei~~l~~l~hpnIv~l~~~~-----~ 78 (347)
T 3zgw_A 4 DYDELLKYYELHETIGTGGFAKVKLACHILTGEMVAIKIMDKNTLGSDLPRIKTEIEALKNLRHQHICQLYHVL-----E 78 (347)
T ss_dssp CSTTTTTTEEEEEEEEECSSCEEEEEEETTTCCEEEEEEEESSCC---CCHHHHHHHHHHTCCCTTBCCEEEEE-----E
T ss_pred cHHHHhcCeEEEEEEEcCCCeEEEEEEECCCCCEEEEEEEEccccchHHHHHHHHHHHHHhCCCCCEeeEEEEE-----E
Confidence 34556789999999999999999999964 89999999986543 23346788999999999999999999995 4
Q ss_pred CCceEEEEEecCCCCChhhhccCCCCCcccccccCHHHHHHHHHHHHHHHHHHHhcCCCCeeecCCCCCCEEeCCCCceE
Q 005045 461 GNDFKALVFEFMSNGNLDQWLHPSPAEHYQFKKLSVIQRLNIAIDVASALDYLHHHCDTPIAHCDLKPSNVLLDKDMTAH 540 (717)
Q Consensus 461 ~~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~dlkp~NIll~~~~~~k 540 (717)
..+..++||||+++++|.+++... ..+++..+..++.||+.||+|||+. +|+||||||+||+++.++.+|
T Consensus 79 ~~~~~~lv~E~~~gg~L~~~l~~~-------~~l~~~~~~~i~~qi~~aL~~LH~~---givHrDlkp~NIll~~~~~~k 148 (347)
T 3zgw_A 79 TANKIFMVLEYCPGGELFDYIISQ-------DRLSEEETRVVFRQIVSAVAYVHSQ---GYAHRDLKPENLLFDEYHKLK 148 (347)
T ss_dssp CSSEEEEEEECCTTCBHHHHHHHH-------SSCCHHHHHHHHHHHHHHHHHHHHT---TCBCCCCCGGGEEECTTSCEE
T ss_pred eCCEEEEEEeCCCCCCHHHHHHHc-------CCCCHHHHHHHHHHHHHHHHHHHHC---CeEeCCccHHHEEEcCCCCEE
Confidence 456899999999999999998644 5689999999999999999999998 999999999999999999999
Q ss_pred EeeeccchhcccccCCCCCCcceeecccccccccCCCccCCC--CCcccchhhHHHHHHHHHhCCCCCCCCCCCchhhhH
Q 005045 541 VGDFGLAKFLFEISDNPSKNQTVSIGLKGSIGYIPPEHMNGQ--VSILGDIYSYGILLLEMFTGKRPTGDMFKDDFSIHM 618 (717)
Q Consensus 541 l~Dfg~~~~~~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~--~~~~sDvwslG~vl~elltg~~p~~~~~~~~~~~~~ 618 (717)
|+|||++...... .........||+.|+|||++.+. ++.++||||+||++|+|++|..||...... ....
T Consensus 149 L~DFG~a~~~~~~------~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~DiwSlG~il~ell~g~~Pf~~~~~~--~~~~ 220 (347)
T 3zgw_A 149 LIDFGLCAKPKGN------KDYHLQTCCGSLAYAAPELIQGKSYLGSEADVWSMGILLYVLMCGFLPFDDDNVM--ALYK 220 (347)
T ss_dssp ECCCTTCBC--------------------CGGGCCHHHHTTC---CCHHHHHHHHHHHHHHHHSSCSSCCSSHH--HHHH
T ss_pred EEeccCcccccCC------CCccccccCCccCccCHHHHcCCCCCCcHhHHHHHHHHHHHHHHCCCCCCCCCHH--HHHH
Confidence 9999998754211 11122345689999999997664 489999999999999999999999753211 1111
Q ss_pred HHHhcCChhhhhhcCCCCCCCCCCcHHHHHHHHHHHHHHhhhhhhhcchhhhHHHHHHHHHHhhccCCCCcCCCCCHHHH
Q 005045 619 FVSMALPDHVMDILDPSMPLDEENDEEQIEEVIEEKEMMIHIDLEVNTKNKLEECFVSVLRIGLMCSTTSPRERIAMNVV 698 (717)
Q Consensus 619 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~cl~~~p~~Rps~~ei 698 (717)
... ...... +...+..+.+++.+||+.||++|||++|+
T Consensus 221 ~i~-----------~~~~~~-------------------------------p~~~s~~~~~li~~~L~~dP~~Rps~~ei 258 (347)
T 3zgw_A 221 KIM-----------RGKYDV-------------------------------PKWLSPSSILLLQQMLQVDPKKRISMKNL 258 (347)
T ss_dssp HHH-----------HTCCCC-------------------------------CTTCCHHHHHHHHHHTCSSGGGSCCHHHH
T ss_pred HHH-----------cCCCCC-------------------------------CCCCCHHHHHHHHHHcccCHhHCcCHHHH
Confidence 110 000000 01114456789999999999999999999
Q ss_pred HHH
Q 005045 699 VNN 701 (717)
Q Consensus 699 l~~ 701 (717)
++.
T Consensus 259 l~h 261 (347)
T 3zgw_A 259 LNH 261 (347)
T ss_dssp HTC
T ss_pred hcC
Confidence 864
No 55
>2psq_A Fibroblast growth factor receptor 2; kinase domain fold consisting of N- and C-lobes, transferase; 2.40A {Homo sapiens} SCOP: d.144.1.7 PDB: 1xr0_A
Probab=100.00 E-value=2.6e-40 Score=350.93 Aligned_cols=270 Identities=22% Similarity=0.393 Sum_probs=209.6
Q ss_pred cccccccccccccCcccccceEEEEeC--------CCchhhhHHhHhhh-hhHHHHHHHHHHHHhcC-CCCceeEEEEee
Q 005045 385 SKSTDNFSKENLIGTGSFGSVYKGTLG--------DGTIVAIKVLKLQQ-QGALKSFIDECNALKST-RHRNILRVITAC 454 (717)
Q Consensus 385 ~~~~~~y~~~~~ig~g~~g~v~~~~~~--------~~~~vavK~~~~~~-~~~~~~~~~e~~~l~~l-~h~ni~~~~~~~ 454 (717)
....++|++.+.||+|+||.||+|.+. ++..||+|++.... ....+.+.+|+++++.+ +||||+++++++
T Consensus 77 ~~~~~~~~~~~~LG~G~fg~Vy~a~~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~~hpnIv~~~~~~ 156 (370)
T 2psq_A 77 EFPRDKLTLGKPLGEGCFGQVVMAEAVGIDKDKPKEAVTVAVKMLKDDATEKDLSDLVSEMEMMKMIGKHKNIINLLGAC 156 (370)
T ss_dssp BCCGGGEEEEEEESCCSSSEEEEEEEETCSTTCTTCEEEEEEEECCTTCBHHHHHHHHHHHHHHHHSCCCTTBCCEEEEE
T ss_pred cccHHHCEeeeEEeeCCCeeEEEEEEecccCcCcCcceeEEEEEecCCcCHHHHHHHHHHHHHHHHhcCCCCEeeEEEEE
Confidence 345689999999999999999999852 45569999987542 34467889999999999 899999999995
Q ss_pred ccccCCCCceEEEEEecCCCCChhhhccCCCCC---------cccccccCHHHHHHHHHHHHHHHHHHHhcCCCCeeecC
Q 005045 455 SSVDLEGNDFKALVFEFMSNGNLDQWLHPSPAE---------HYQFKKLSVIQRLNIAIDVASALDYLHHHCDTPIAHCD 525 (717)
Q Consensus 455 ~~~~~~~~~~~~lv~e~~~~~~L~~~l~~~~~~---------~~~~~~~~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~d 525 (717)
. ..+..|+||||+++++|.+++...... ......+++..+..++.||+.||+|||+. +|+|||
T Consensus 157 ~-----~~~~~~lv~e~~~~g~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~qi~~aL~~LH~~---~ivHrD 228 (370)
T 2psq_A 157 T-----QDGPLYVIVEYASKGNLREYLRARRPPGMEYSYDINRVPEEQMTFKDLVSCTYQLARGMEYLASQ---KCIHRD 228 (370)
T ss_dssp C-----SSSSCEEEEECCTTCBHHHHHHHTCCC-----------CCCCCCHHHHHHHHHHHHHHHHHHHHT---TEECSC
T ss_pred c-----cCCCEEEEEEcCCCCCHHHHHHhhCCccccccccccccccccCCHHHHHHHHHHHHHHHHHHHhC---Ceeccc
Confidence 3 455789999999999999998754311 01124589999999999999999999998 999999
Q ss_pred CCCCCEEeCCCCceEEeeeccchhcccccCCCCCCcceeecccccccccCCCccCC-CCCcccchhhHHHHHHHHHh-CC
Q 005045 526 LKPSNVLLDKDMTAHVGDFGLAKFLFEISDNPSKNQTVSIGLKGSIGYIPPEHMNG-QVSILGDIYSYGILLLEMFT-GK 603 (717)
Q Consensus 526 lkp~NIll~~~~~~kl~Dfg~~~~~~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~-~~~~~sDvwslG~vl~ellt-g~ 603 (717)
|||+||+++.++.+||+|||++........ ........+++.|+|||++.+ .++.++|||||||++|||++ |.
T Consensus 229 lkp~NIll~~~~~~kl~DFG~a~~~~~~~~-----~~~~~~~~~t~~y~aPE~~~~~~~~~~~DvwslG~il~ellt~g~ 303 (370)
T 2psq_A 229 LAARNVLVTENNVMKIADFGLARDINNIDY-----YKKTTNGRLPVKWMAPEALFDRVYTHQSDVWSFGVLMWEIFTLGG 303 (370)
T ss_dssp CCGGGEEECTTCCEEECCCSSCEETTCCCT-----TCTTTTTTSCGGGCCHHHHHTCCCCHHHHHHHHHHHHHHHHTTSC
T ss_pred cchhhEEECCCCCEEEccccCCcccCcccc-----eecccCCCcccceECHhHhcCCCCCcHHHHHHHHHHHHHHHcCCC
Confidence 999999999999999999999986522111 111223446788999999654 58999999999999999999 99
Q ss_pred CCCCCCCCCchhhhHHHHhcCChhhhhhcCCCCCCCCCCcHHHHHHHHHHHHHHhhhhhhhcchhhhHHHHHHHHHHhhc
Q 005045 604 RPTGDMFKDDFSIHMFVSMALPDHVMDILDPSMPLDEENDEEQIEEVIEEKEMMIHIDLEVNTKNKLEECFVSVLRIGLM 683 (717)
Q Consensus 604 ~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~ 683 (717)
.||........ ....... .... .+..++..+.+++.+
T Consensus 304 ~p~~~~~~~~~--~~~~~~~--------~~~~---------------------------------~~~~~~~~l~~li~~ 340 (370)
T 2psq_A 304 SPYPGIPVEEL--FKLLKEG--------HRMD---------------------------------KPANCTNELYMMMRD 340 (370)
T ss_dssp CSSTTCCGGGH--HHHHHTT--------CCCC---------------------------------CCTTSCHHHHHHHHH
T ss_pred CCCCCCCHHHH--HHHHhcC--------CCCC---------------------------------CCCCCCHHHHHHHHH
Confidence 99976432211 1111000 0000 112235678899999
Q ss_pred cCCCCcCCCCCHHHHHHHHHHHHHHHH
Q 005045 684 CSTTSPRERIAMNVVVNNLKTIRNCFL 710 (717)
Q Consensus 684 cl~~~p~~Rps~~eil~~l~~i~~~~~ 710 (717)
||+.+|++|||+.|+++.|+.+.....
T Consensus 341 ~l~~dP~~Rpt~~ell~~L~~il~~~~ 367 (370)
T 2psq_A 341 CWHAVPSQRPTFKQLVEDLDRILTLTT 367 (370)
T ss_dssp HTCSSGGGSCCHHHHHHHHHHHHHHHC
T ss_pred HcCCChhhCcCHHHHHHHHHHHHHHhc
Confidence 999999999999999999999986543
No 56
>3lb7_A RAF proto-oncogene serine/threonine-protein kinas; kinase domain, alternative splicing, ATP-binding, disease MU kinase, metal-binding; 4.00A {Homo sapiens} PDB: 3omv_A*
Probab=100.00 E-value=3.7e-40 Score=340.79 Aligned_cols=269 Identities=29% Similarity=0.464 Sum_probs=206.1
Q ss_pred cccccccccccccccCcccccceEEEEeCCCchhhhHHhHhh--hhhHHHHHHHHHHHHhcCCCCceeEEEEeeccccCC
Q 005045 383 DISKSTDNFSKENLIGTGSFGSVYKGTLGDGTIVAIKVLKLQ--QQGALKSFIDECNALKSTRHRNILRVITACSSVDLE 460 (717)
Q Consensus 383 ~~~~~~~~y~~~~~ig~g~~g~v~~~~~~~~~~vavK~~~~~--~~~~~~~~~~e~~~l~~l~h~ni~~~~~~~~~~~~~ 460 (717)
.+....++|++.++||+|+||.||+|.+.. .+|+|+++.. .....+.+.+|++++++++||||+++++++.
T Consensus 30 ~~~i~~~~~~~~~~lG~G~~g~Vy~~~~~~--~~avk~~k~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~----- 102 (307)
T 3lb7_A 30 YWEIEASEVMLSTRIGSGSFGTVYKGKWHG--DVAVKILKVVDPTPEQFQAFRNEVAVLRKTRHVNILLFMGYMT----- 102 (307)
T ss_dssp CCBCCTTSCCEEEEEEECSSCEEEEEESSS--EEEEEECCCSSCCHHHHHHHHHHHHHHTTCCCTTBCCEEEEEC-----
T ss_pred eEEecccceEEEeEecCCCCeEEEEEEECC--EEEEEEEecCCCCHHHHHHHHHHHHHHHhCCCCCEEEEEEEEc-----
Confidence 344557899999999999999999998743 4777776543 2344578899999999999999999999852
Q ss_pred CCceEEEEEecCCCCChhhhccCCCCCcccccccCHHHHHHHHHHHHHHHHHHHhcCCCCeeecCCCCCCEEeCCCCceE
Q 005045 461 GNDFKALVFEFMSNGNLDQWLHPSPAEHYQFKKLSVIQRLNIAIDVASALDYLHHHCDTPIAHCDLKPSNVLLDKDMTAH 540 (717)
Q Consensus 461 ~~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~dlkp~NIll~~~~~~k 540 (717)
.+..++||||+++++|.+++.... ..+++..+..++.||+.||+|||+. +|+||||||+||+++.++.+|
T Consensus 103 -~~~~~lv~e~~~~~~L~~~l~~~~------~~~~~~~~~~i~~qi~~~L~~LH~~---~ivH~Dlkp~NIll~~~~~~k 172 (307)
T 3lb7_A 103 -KDNLAIVTQWCEGSSLYKHLHVQE------TKFQMFQLIDIARQTAQGMDYLHAK---NIIHRDMKSNNIFLHEGLTVK 172 (307)
T ss_dssp -SSSCEEEEECCSSCBHHHHHHTSC------CCCCHHHHHHHHHHHHHHHHHHHHT---TCCCSCCCSSSEEECTTSCEE
T ss_pred -cCcEEEEEecCCCCcHHHHHHhcc------cCCCHHHHHHHHHHHHHHHHHHHhC---CEeeCCCChhhEEEcCCCCEE
Confidence 235799999999999999987543 5689999999999999999999998 999999999999999999999
Q ss_pred EeeeccchhcccccCCCCCCcceeecccccccccCCCccC----CCCCcccchhhHHHHHHHHHhCCCCCCCCCCCchhh
Q 005045 541 VGDFGLAKFLFEISDNPSKNQTVSIGLKGSIGYIPPEHMN----GQVSILGDIYSYGILLLEMFTGKRPTGDMFKDDFSI 616 (717)
Q Consensus 541 l~Dfg~~~~~~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~----~~~~~~sDvwslG~vl~elltg~~p~~~~~~~~~~~ 616 (717)
|+|||.+....... .........||+.|+|||++. +.++.++|||||||++|+|++|..||......+...
T Consensus 173 l~DFg~a~~~~~~~-----~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~~~Di~slG~il~elltg~~Pf~~~~~~~~~~ 247 (307)
T 3lb7_A 173 IGDFGLATVKSRWS-----GSQQVEQPTGSVLWMAPEVIRMQDNNPFSFQSDVYSYGIVLYELMTGELPYSHINNRDQII 247 (307)
T ss_dssp ECCCCSSCC-----------------CCCCTTSCCHHHHHCCSSCCCCHHHHHHHHHHHHHHHHHSSCTTTTCCCHHHHH
T ss_pred EccCCCceeccccc-----ccccccCCCCCcceECcceeeccCCCCCCchhhHHHHHHHHHHHHhCCCCCccCCcHHHHH
Confidence 99999997542111 111223356899999999963 347899999999999999999999997653322211
Q ss_pred hHHHHhcCChhhhhhcCCCCCCCCCCcHHHHHHHHHHHHHHhhhhhhhcchhhhHHHHHHHHHHhhccCCCCcCCCCCHH
Q 005045 617 HMFVSMALPDHVMDILDPSMPLDEENDEEQIEEVIEEKEMMIHIDLEVNTKNKLEECFVSVLRIGLMCSTTSPRERIAMN 696 (717)
Q Consensus 617 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~cl~~~p~~Rps~~ 696 (717)
....... ..+.... ....++..+.+++.+||+.+|++|||+.
T Consensus 248 ~~~~~~~--------~~~~~~~------------------------------~~~~~~~~l~~li~~~l~~~p~~RPs~~ 289 (307)
T 3lb7_A 248 FMVGRGY--------ASPDLSK------------------------------LYKNCPKAMKRLVADCVKKVKEERPLFP 289 (307)
T ss_dssp HHHHHTC--------CCCCSTT------------------------------SCSSSCHHHHHHHHHHSCSSSTTSCCHH
T ss_pred HHHhcCC--------CCcchhh------------------------------hhcCCcHHHHHHHHHHhhCChhhCcCHH
Confidence 1111110 1111100 1123356788999999999999999999
Q ss_pred HHHHHHHHHHHHHHh
Q 005045 697 VVVNNLKTIRNCFLE 711 (717)
Q Consensus 697 eil~~l~~i~~~~~~ 711 (717)
||++.++.++..+++
T Consensus 290 ~il~~l~~l~~~~pk 304 (307)
T 3lb7_A 290 QILSSIELLQHSLPK 304 (307)
T ss_dssp HHHHHHHHHHTTCCC
T ss_pred HHHHHHHHHHhhccc
Confidence 999999999877654
No 57
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=100.00 E-value=1.5e-39 Score=365.37 Aligned_cols=353 Identities=18% Similarity=0.187 Sum_probs=271.3
Q ss_pred EEEcCCCcCcCCCCcCCcCCCCCCEEECCCCcccccCCcCCCCCCCCCEEEccCccccccCCccccCCCCCCEEeccCCc
Q 005045 14 DLNLTYNYLSGKIPTNLSHCTELRSFEASVNDFVGQIPNQLSSLTKLEIIGLGGSNLTGNVPAWIGNFSSLKALSLAWNN 93 (717)
Q Consensus 14 ~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~ 93 (717)
+.++++++++ .+|..+. ++|++|+|++|.+++..|..|.++++|++|+|++|.+++..|..|.++++|++|+|++|+
T Consensus 9 ~c~~~~~~l~-~ip~~~~--~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~ 85 (549)
T 2z81_A 9 VCDGRSRSFT-SIPSGLT--AAMKSLDLSFNKITYIGHGDLRACANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSDNH 85 (549)
T ss_dssp EEECTTSCCS-SCCSCCC--TTCCEEECCSSCCCEECSSTTSSCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSC
T ss_pred eEECCCCccc-cccccCC--CCccEEECcCCccCccChhhhhcCCcccEEECCCCCcCccChhhccccccCCEEECCCCc
Confidence 4688999999 6777665 799999999999998889999999999999999999998888999999999999999999
Q ss_pred CcccCChhhhccCCCCeEeccCCCCCCC-CCccccCCCCccEEEcccCcccccCCcccccCCCCcceeecccccccccCC
Q 005045 94 LRGSIPNELGQLSGLGFFTLYGNFISGI-IPSSIYNISSIYYFSVTQNQLHGQLPTDVGLTLPNLKIFAGAVNYFTGSIP 172 (717)
Q Consensus 94 l~~~~~~~~~~l~~L~~L~L~~N~i~~~-~~~~~~~l~~L~~L~L~~N~l~~~l~~~~~~~l~~L~~L~l~~n~l~~~~~ 172 (717)
+++..|..|.++++|++|+|++|.+++. .|..|.++++|++|++++|.+.+.+|...+..+++|+.|++++|.+++..|
T Consensus 86 l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~ 165 (549)
T 2z81_A 86 LSSLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRNYQS 165 (549)
T ss_dssp CCSCCHHHHTTCTTCCEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECT
T ss_pred cCccCHHHhccCCCCcEEECCCCcccccchhhhhhccCCccEEECCCCccccccCHhhhhcccccCeeeccCCcccccCh
Confidence 9988788899999999999999999964 567899999999999999995558887778899999999999999999999
Q ss_pred ccCCCCCCCCEEeccCccccccCCCCccCCCCCCeeeccccccCCcccCchh-------------------------h--
Q 005045 173 VSLSNASNLQVLDFAENGLTGTIPGNFGSLKDLVRLNFDQNELGSREIGDLN-------------------------F-- 225 (717)
Q Consensus 173 ~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~-------------------------~-- 225 (717)
..+..+++|++|++++|.+....+..+..+++|+.|++++|+++..+..... +
T Consensus 166 ~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~ 245 (549)
T 2z81_A 166 QSLKSIRDIHHLTLHLSESAFLLEIFADILSSVRYLELRDTNLARFQFSPLPVDEVSSPMKKLAFRGSVLTDESFNELLK 245 (549)
T ss_dssp TTTTTCSEEEEEEEECSBSTTHHHHHHHSTTTBSEEEEESCBCTTCCCCCCSSCCCCCCCCEEEEESCEEEHHHHHHHHG
T ss_pred hhhhccccCceEecccCcccccchhhHhhcccccEEEccCCccccccccccchhhhhhcccceeccccccchhHHHHHHH
Confidence 9998877777777777766532222233466666666666666553210000 0
Q ss_pred ---------------------------------------------------------hhhhccCCCCCEEEeecCcccCc
Q 005045 226 ---------------------------------------------------------LKFLANCTSLEVLGLARNSFGGE 248 (717)
Q Consensus 226 ---------------------------------------------------------~~~~~~l~~L~~L~L~~N~l~~~ 248 (717)
...+...++|+.|++++|.++ .
T Consensus 246 ~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~l~~~~~~~~~L~~L~l~~n~l~-~ 324 (549)
T 2z81_A 246 LLRYILELSEVEFDDCTLNGLGDFNPSESDVVSELGKVETVTIRRLHIPQFYLFYDLSTVYSLLEKVKRITVENSKVF-L 324 (549)
T ss_dssp GGGGCTTCCEEEEESCEEECCSCCCCCTTTCCCCCTTCCEEEEESCBCSCGGGSCCCCHHHHHSTTCCEEEEESSCCC-C
T ss_pred HhhhhccccccccccccccccccccccchhhhhhhcccccccccccccchhhhcccchhhhhhcccceEEEeccCccc-c
Confidence 000122346777777777776 6
Q ss_pred CchhhhhccccccEEecCCCccCCCCC---ccccCCCCCCEEEccCCcCccccc--hhhhcCCCCCeEEcccCcCCCCCC
Q 005045 249 MPISIANLSTHLRRLTMGENLMHGNIP---VGIGNLVNLNLLGLEGNNLSGSVP--EVIGRLNKLEGLGLNVNKFSGLIP 323 (717)
Q Consensus 249 ~p~~~~~~~~~L~~L~l~~N~l~~~~~---~~~~~l~~L~~L~L~~N~l~~~~~--~~~~~l~~L~~L~Ls~N~l~~~~~ 323 (717)
+|..++...++|++|++++|.+.+..| ..+..+++|+.|+|++|++++..+ ..+..+++|++|+|++|+++ .+|
T Consensus 325 ip~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~-~lp 403 (549)
T 2z81_A 325 VPCSFSQHLKSLEFLDLSENLMVEEYLKNSACKGAWPSLQTLVLSQNHLRSMQKTGEILLTLKNLTSLDISRNTFH-PMP 403 (549)
T ss_dssp CCHHHHHHCTTCCEEECCSSCCCHHHHHHHTCTTSSTTCCEEECTTSCCCCHHHHHHHGGGCTTCCEEECTTCCCC-CCC
T ss_pred CCHHHHhcCccccEEEccCCccccccccchhhhhccccCcEEEccCCcccccccchhhhhcCCCCCEEECCCCCCc-cCC
Confidence 777765433588888888888876543 346777888888888888875432 45777888888888888887 446
Q ss_pred cccccccccceeecccccccccCCcCc------------------cCcCCCceEEeecccCCCCCCcc
Q 005045 324 SSLGNLTILTRLWMEENRLEGSIPPSL------------------GNCQKLLVLNLSSNDLNGTIPKE 373 (717)
Q Consensus 324 ~~~~~l~~L~~L~L~~N~l~~~~p~~~------------------~~l~~L~~L~l~~N~l~~~~p~~ 373 (717)
..+..+++|++|+|++|+++ .+|..+ ..+++|++|++++|.|+ .+|..
T Consensus 404 ~~~~~~~~L~~L~Ls~N~l~-~l~~~~~~~L~~L~Ls~N~l~~~~~~l~~L~~L~Ls~N~l~-~ip~~ 469 (549)
T 2z81_A 404 DSCQWPEKMRFLNLSSTGIR-VVKTCIPQTLEVLDVSNNNLDSFSLFLPRLQELYISRNKLK-TLPDA 469 (549)
T ss_dssp SCCCCCTTCCEEECTTSCCS-CCCTTSCTTCSEEECCSSCCSCCCCCCTTCCEEECCSSCCS-SCCCG
T ss_pred hhhcccccccEEECCCCCcc-cccchhcCCceEEECCCCChhhhcccCChhcEEECCCCccC-cCCCc
Confidence 66777777777777777776 333322 36788999999999998 77764
No 58
>3niz_A Rhodanese family protein; structural genomics, structural genomics consortium, SGC, phosphotransferase, cyclin dependent kinase; HET: ADP; 2.40A {Cryptosporidium parvum} SCOP: d.144.1.7 PDB: 2qkr_A*
Probab=100.00 E-value=4.7e-40 Score=340.79 Aligned_cols=279 Identities=25% Similarity=0.326 Sum_probs=205.0
Q ss_pred CCCcccccccccccccccccCcccccceEEEEeCCCchhhhHHhHhhh--hhHHHHHHHHHHHHhcCCCCceeEEEEeec
Q 005045 378 GMSYSDISKSTDNFSKENLIGTGSFGSVYKGTLGDGTIVAIKVLKLQQ--QGALKSFIDECNALKSTRHRNILRVITACS 455 (717)
Q Consensus 378 ~~s~~~~~~~~~~y~~~~~ig~g~~g~v~~~~~~~~~~vavK~~~~~~--~~~~~~~~~e~~~l~~l~h~ni~~~~~~~~ 455 (717)
+.+....+...++|++.++||+|+||.||+|++++|+.||+|++.... ......+.+|++++++++||||+++++++
T Consensus 10 ~~~~~~~q~l~~~y~~~~~lG~G~~g~V~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~hp~iv~~~~~~- 88 (311)
T 3niz_A 10 GRENLYFQGLMEKYQKLEKVGEGTYGVVYKAKDSQGRIVALKRIRLDAEDEGIPSTAIREISLLKELHHPNIVSLIDVI- 88 (311)
T ss_dssp -----CEECSSCEEEEEEEEEECSSCEEEEEEETTSCEEEEEEEC------CHHHHHHHHHHHHHHCCCTTBCCEEEEE-
T ss_pred cccceeecchHhhhHhhhhccCCCCeEEEEEEECCCCEEEEEEEecccccchhhHHHHHHHHHHHHcCCCCEeeeeeEE-
Confidence 344455667789999999999999999999998889999999986442 33457788999999999999999999995
Q ss_pred cccCCCCceEEEEEecCCCCChhhhccCCCCCcccccccCHHHHHHHHHHHHHHHHHHHhcCCCCeeecCCCCCCEEeCC
Q 005045 456 SVDLEGNDFKALVFEFMSNGNLDQWLHPSPAEHYQFKKLSVIQRLNIAIDVASALDYLHHHCDTPIAHCDLKPSNVLLDK 535 (717)
Q Consensus 456 ~~~~~~~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~dlkp~NIll~~ 535 (717)
...+..++||||++ +++.+++.... ..+++..+..++.||+.||+|||+. +|+||||||+||+++.
T Consensus 89 ----~~~~~~~lv~e~~~-~~l~~~~~~~~------~~~~~~~~~~~~~qi~~~l~~LH~~---~ivH~Dikp~NIl~~~ 154 (311)
T 3niz_A 89 ----HSERCLTLVFEFME-KDLKKVLDENK------TGLQDSQIKIYLYQLLRGVAHCHQH---RILHRDLKPQNLLINS 154 (311)
T ss_dssp ----CCSSCEEEEEECCS-EEHHHHHHTCT------TCCCHHHHHHHHHHHHHHHHHHHHT---TEECCCCCGGGEEECT
T ss_pred ----ccCCEEEEEEcCCC-CCHHHHHHhcc------CCCCHHHHHHHHHHHHHHHHHHHHC---CcccCCCchHhEEECC
Confidence 44568999999997 58888876543 4589999999999999999999998 9999999999999999
Q ss_pred CCceEEeeeccchhcccccCCCCCCcceeecccccccccCCCccCC--CCCcccchhhHHHHHHHHHhCCCCCCCCCCCc
Q 005045 536 DMTAHVGDFGLAKFLFEISDNPSKNQTVSIGLKGSIGYIPPEHMNG--QVSILGDIYSYGILLLEMFTGKRPTGDMFKDD 613 (717)
Q Consensus 536 ~~~~kl~Dfg~~~~~~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~--~~~~~sDvwslG~vl~elltg~~p~~~~~~~~ 613 (717)
++.+||+|||.+...... ........+|+.|+|||++.+ .++.++|||||||++|+|++|..||......+
T Consensus 155 ~~~~kl~Dfg~a~~~~~~-------~~~~~~~~~t~~y~aPE~~~~~~~~~~~~DiwslG~il~~ll~g~~pf~~~~~~~ 227 (311)
T 3niz_A 155 DGALKLADFGLARAFGIP-------VRSYTHEVVTLWYRAPDVLMGSKKYSTSVDIWSIGCIFAEMITGKPLFPGVTDDD 227 (311)
T ss_dssp TCCEEECCCTTCEETTSC-------CC---CCCCCCTTCCHHHHTTCCSCCTHHHHHHHHHHHHHHHHSSCSCCCSSTTT
T ss_pred CCCEEEccCcCceecCCC-------cccccCCcccCCcCCHHHhcCCCCCCchHHhHHHHHHHHHHHhCCCCCCCCChHH
Confidence 999999999999865211 112233468999999999654 47999999999999999999999998765443
Q ss_pred hhhhHHHHh--cCChhhhh------hcCCCCCCCCCCcHHHHHHHHHHHHHHhhhhhhhcchhhhHHHHHHHHHHhhccC
Q 005045 614 FSIHMFVSM--ALPDHVMD------ILDPSMPLDEENDEEQIEEVIEEKEMMIHIDLEVNTKNKLEECFVSVLRIGLMCS 685 (717)
Q Consensus 614 ~~~~~~~~~--~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~cl 685 (717)
......... ..+..+.. ..+........... ....+.++.++.+++.+||
T Consensus 228 ~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------------------~~~~~~~~~~~~~li~~~L 285 (311)
T 3niz_A 228 QLPKIFSILGTPNPREWPQVQELPLWKQRTFQVFEKKPW----------------------SSIIPGFCQEGIDLLSNML 285 (311)
T ss_dssp HHHHHHHHHCCCCTTTSGGGTTSHHHHSCCCCCCCCCCH----------------------HHHSTTCCHHHHHHHHHHS
T ss_pred HHHHHHHHHCCCChHHhhhhhccchhhhcccccccCCcH----------------------HHhCcccCHHHHHHHHHHc
Confidence 322111111 11111111 00111110000000 0011223556789999999
Q ss_pred CCCcCCCCCHHHHHH
Q 005045 686 TTSPRERIAMNVVVN 700 (717)
Q Consensus 686 ~~~p~~Rps~~eil~ 700 (717)
++||++|||++|+++
T Consensus 286 ~~dP~~Rpt~~ell~ 300 (311)
T 3niz_A 286 CFDPNKRISARDAMN 300 (311)
T ss_dssp CSCTTTSCCHHHHHT
T ss_pred CCChhHCCCHHHHhc
Confidence 999999999999986
No 59
>3ugc_A Tyrosine-protein kinase JAK2; small molecule inhibitor, ATP binding, transferase-transfera inhibitor complex; HET: 046; 1.34A {} PDB: 3krr_A* 3lpb_A* 4aqc_A* 4e4m_A* 4f08_A* 4f09_A* 3q32_A* 3rvg_A* 4hge_A* 3tjc_A* 3tjd_A* 4bbe_A* 4bbf_A* 2b7a_A* 3fup_A* 3e64_A* 3e62_A* 3e63_A* 2xa4_A* 3iok_A* ...
Probab=100.00 E-value=8.3e-41 Score=344.19 Aligned_cols=280 Identities=23% Similarity=0.377 Sum_probs=208.4
Q ss_pred cccccccccccCcccccceEEEEe-----CCCchhhhHHhHhhhhhHHHHHHHHHHHHhcCCCCceeEEEEeeccccCCC
Q 005045 387 STDNFSKENLIGTGSFGSVYKGTL-----GDGTIVAIKVLKLQQQGALKSFIDECNALKSTRHRNILRVITACSSVDLEG 461 (717)
Q Consensus 387 ~~~~y~~~~~ig~g~~g~v~~~~~-----~~~~~vavK~~~~~~~~~~~~~~~e~~~l~~l~h~ni~~~~~~~~~~~~~~ 461 (717)
..++|++.+.||+|+||.||+|++ .+++.||+|++........+.+.+|++++++++||||+++++++... +
T Consensus 8 ~~~~~~~~~~lg~G~~g~V~~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~---~ 84 (295)
T 3ugc_A 8 EERHLKFLQQLGKGNFGSVEMCRYDPLQDNTGEVVAVKKLQHSTEEHLRDFEREIEILKSLQHDNIVKYKGVCYSA---G 84 (295)
T ss_dssp CGGGEEEEEEEEECSSEEEEEEEECTTCSSCCEEEEEEEESCCCHHHHHHHHHHHHHHHTCCCTTBCCEEEEECHH---H
T ss_pred CHHHhhhhheeeccCCEEEEEEEEecccCCCCcEEEEEEcccCCHHHHHHHHHHHHHHHhCCCCCEeeEEEEEecC---C
Confidence 467999999999999999999983 37889999998866666678899999999999999999999986432 2
Q ss_pred CceEEEEEecCCCCChhhhccCCCCCcccccccCHHHHHHHHHHHHHHHHHHHhcCCCCeeecCCCCCCEEeCCCCceEE
Q 005045 462 NDFKALVFEFMSNGNLDQWLHPSPAEHYQFKKLSVIQRLNIAIDVASALDYLHHHCDTPIAHCDLKPSNVLLDKDMTAHV 541 (717)
Q Consensus 462 ~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~dlkp~NIll~~~~~~kl 541 (717)
....++||||+++++|.+++.... ..+++..+..++.||+.||+|||+. +|+||||||+||+++.++.+||
T Consensus 85 ~~~~~lv~e~~~~~~L~~~l~~~~------~~~~~~~~~~~~~qi~~~l~~lH~~---~ivH~Dikp~Nil~~~~~~~kl 155 (295)
T 3ugc_A 85 RRNLKLIMEYLPYGSLRDYLQKHK------ERIDHIKLLQYTSQICKGMEYLGTK---RYIHRDLATRNILVENENRVKI 155 (295)
T ss_dssp HTSCEEEEECCTTCBHHHHHHHCG------GGCCHHHHHHHHHHHHHHHHHHHHT---TCCCSCCSGGGEEEEETTEEEE
T ss_pred CCceEEEEEeCCCCCHHHHHHhcc------cccCHHHHHHHHHHHHHHHHHHhcC---CcccCCCCHhhEEEcCCCeEEE
Confidence 345899999999999999997542 4589999999999999999999997 9999999999999999999999
Q ss_pred eeeccchhcccccCCCCCCcceeecccccccccCCCccC-CCCCcccchhhHHHHHHHHHhCCCCCCCCCCCchhhhHHH
Q 005045 542 GDFGLAKFLFEISDNPSKNQTVSIGLKGSIGYIPPEHMN-GQVSILGDIYSYGILLLEMFTGKRPTGDMFKDDFSIHMFV 620 (717)
Q Consensus 542 ~Dfg~~~~~~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~-~~~~~~sDvwslG~vl~elltg~~p~~~~~~~~~~~~~~~ 620 (717)
+|||.+....... ..........++..|+|||++. +.++.++|||||||++|+|++|..||.....+ .....
T Consensus 156 ~Dfg~~~~~~~~~----~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~~l~~l~~g~~~~~~~~~~---~~~~~ 228 (295)
T 3ugc_A 156 GDFGLTKVLPQDK----EFFKVKEPGESPIFWYAPESLTESKFSVASDVWSFGVVLYELFTYIEKSKSPPAE---FMRMI 228 (295)
T ss_dssp CCCCSCC-----------------CTTCGGGGCCHHHHHHCCCCHHHHHHHHHHHHHHHHHTTCTTCSHHHH---HHHHH
T ss_pred ccCcccccccCCc----ceeeeccCCCCccceeCcHHhcCCCCChHHHHHHHHHHHHHHHhcccccCCChHH---HHhhh
Confidence 9999998752211 1112223345777899999965 45899999999999999999999998543110 00000
Q ss_pred HhcCChhhhhhcCCCCCCCCCCcHHHHHHHHHHHHHHhhhhhhhcchhhhHHHHHHHHHHhhccCCCCcCCCCCHHHHHH
Q 005045 621 SMALPDHVMDILDPSMPLDEENDEEQIEEVIEEKEMMIHIDLEVNTKNKLEECFVSVLRIGLMCSTTSPRERIAMNVVVN 700 (717)
Q Consensus 621 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~cl~~~p~~Rps~~eil~ 700 (717)
.... ............... ....+.+..++..+.+++.+||+.+|++|||++|+++
T Consensus 229 ~~~~-----------------~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~l~~li~~~l~~dp~~Rps~~el~~ 284 (295)
T 3ugc_A 229 GNDK-----------------QGQMIVFHLIELLKN-------NGRLPRPDGCPDEIYMIMTECWNNNVNQRPSFRDLAL 284 (295)
T ss_dssp CTTC-----------------CTHHHHHHHHHHHHT-------TCCCCCCTTCCHHHHHHHHHHSCSSGGGSCCHHHHHH
T ss_pred cCcc-----------------ccchhHHHHHHHHhc-------cCcCCCCcCcCHHHHHHHHHHcCCChhhCCCHHHHHH
Confidence 0000 000000000000000 0011123345778899999999999999999999999
Q ss_pred HHHHHHHHH
Q 005045 701 NLKTIRNCF 709 (717)
Q Consensus 701 ~l~~i~~~~ 709 (717)
.|+.++++.
T Consensus 285 ~L~~l~~~l 293 (295)
T 3ugc_A 285 RVDQIRDNM 293 (295)
T ss_dssp HHHHHHHC-
T ss_pred HHHHHHHhc
Confidence 999998764
No 60
>3q4u_A Activin receptor type-1; structural genomics consortium, SGC, protein kinase, transfe; HET: LDN FLC; 1.82A {Homo sapiens} PDB: 3mtf_A* 3oom_A* 4dym_A* 3h9r_A* 3my0_A*
Probab=100.00 E-value=3.2e-40 Score=340.90 Aligned_cols=269 Identities=24% Similarity=0.376 Sum_probs=202.1
Q ss_pred ccccccccccccCcccccceEEEEeCCCchhhhHHhHhhhhhHHHHHHHHHHHHhc--CCCCceeEEEEeeccccCCCCc
Q 005045 386 KSTDNFSKENLIGTGSFGSVYKGTLGDGTIVAIKVLKLQQQGALKSFIDECNALKS--TRHRNILRVITACSSVDLEGND 463 (717)
Q Consensus 386 ~~~~~y~~~~~ig~g~~g~v~~~~~~~~~~vavK~~~~~~~~~~~~~~~e~~~l~~--l~h~ni~~~~~~~~~~~~~~~~ 463 (717)
...++|++.+.||+|+||.||+|++ +++.||+|++.... ...+..|.+++.. ++||||+++++++... .....
T Consensus 5 ~~~~~y~~~~~lg~G~~g~V~~~~~-~~~~vavK~~~~~~---~~~~~~e~~~~~~~~l~h~niv~~~~~~~~~-~~~~~ 79 (301)
T 3q4u_A 5 TVARDITLLECVGKGRYGEVWRGSW-QGENVAVKIFSSRD---EKSWFRETELYNTVMLRHENILGFIASDMTS-RHSST 79 (301)
T ss_dssp CCGGGCEEEEEEEECSSEEEEEEEE-TTEEEEEEEECGGG---HHHHHHHHHHHHHTCCCCTTBCCEEEEEEEE-ETTEE
T ss_pred cccCcEEEEEeeccCCCcEEEEEEE-CCEEEEEEEecccc---chhhHHHHHHHHHhhccCcCeeeEEEeeccc-cCCCc
Confidence 3467999999999999999999998 68899999986543 2444556666655 7999999999986543 23445
Q ss_pred eEEEEEecCCCCChhhhccCCCCCcccccccCHHHHHHHHHHHHHHHHHHH--------hcCCCCeeecCCCCCCEEeCC
Q 005045 464 FKALVFEFMSNGNLDQWLHPSPAEHYQFKKLSVIQRLNIAIDVASALDYLH--------HHCDTPIAHCDLKPSNVLLDK 535 (717)
Q Consensus 464 ~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~i~~~i~~~l~~LH--------~~~~~~ivH~dlkp~NIll~~ 535 (717)
..++||||+++++|.++++. ..+++..+..++.||+.||+||| +. +|+||||||+||+++.
T Consensus 80 ~~~lv~e~~~~g~L~~~l~~--------~~~~~~~~~~i~~~i~~~l~~lH~~~~~~~~~~---~ivH~Dlkp~Nill~~ 148 (301)
T 3q4u_A 80 QLWLITHYHEMGSLYDYLQL--------TTLDTVSCLRIVLSIASGLAHLHIEIFGTQGKP---AIAHRDLKSKNILVKK 148 (301)
T ss_dssp EEEEEECCCTTCBHHHHHTT--------CCBCHHHHHHHHHHHHHHHHHHHSCBCSTTCBC---EEECSCCCGGGEEECT
T ss_pred eeEEehhhccCCCHHHHHhh--------cccCHHHHHHHHHHHHHHHHHHHHhhhhccCCC---CeecCCCChHhEEEcC
Confidence 78999999999999999964 35899999999999999999999 75 9999999999999999
Q ss_pred CCceEEeeeccchhcccccCCCCCCcceeecccccccccCCCccCCC-------CCcccchhhHHHHHHHHHhC------
Q 005045 536 DMTAHVGDFGLAKFLFEISDNPSKNQTVSIGLKGSIGYIPPEHMNGQ-------VSILGDIYSYGILLLEMFTG------ 602 (717)
Q Consensus 536 ~~~~kl~Dfg~~~~~~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~-------~~~~sDvwslG~vl~elltg------ 602 (717)
++.+||+|||.+......... .........||+.|+|||++.+. ++.++|||||||++|||++|
T Consensus 149 ~~~~kl~Dfg~a~~~~~~~~~---~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~~~~~~DvwslG~il~el~tg~~~~~~ 225 (301)
T 3q4u_A 149 NGQCCIADLGLAVMHSQSTNQ---LDVGNNPRVGTKRYMAPEVLDETIQVDCFDSYKRVDIWAFGLVLWEVARRMVSNGI 225 (301)
T ss_dssp TSCEEECCCTTCEEEETTTTE---EECCCCCCCCCGGGCCHHHHTTCCCTTCHHHHHHHHHHHHHHHHHHHHTTBCBTTB
T ss_pred CCCEEEeeCCCeeeccccccc---ccccccccccccceeChhhhcCcCCCCcccCCchhhHHHHHHHHHHHHhhhcCccc
Confidence 999999999999765221111 00111234689999999997654 34789999999999999999
Q ss_pred ----CCCCCCCCCCchhhhHHHHhcCChhhhhhcCCCCCCCCCCcHHHHHHHHHHHHHHhhhhhhhcchhhhHHHHHHHH
Q 005045 603 ----KRPTGDMFKDDFSIHMFVSMALPDHVMDILDPSMPLDEENDEEQIEEVIEEKEMMIHIDLEVNTKNKLEECFVSVL 678 (717)
Q Consensus 603 ----~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 678 (717)
..||................... ....+.. ........++..+.
T Consensus 226 ~~~~~~pf~~~~~~~~~~~~~~~~~~~----~~~~~~~----------------------------~~~~~~~~~~~~l~ 273 (301)
T 3q4u_A 226 VEDYKPPFYDVVPNDPSFEDMRKVVCV----DQQRPNI----------------------------PNRWFSDPTLTSLA 273 (301)
T ss_dssp CCCCCCTTTTTSCSSCCHHHHHHHHTT----SCCCCCC----------------------------CGGGGGSHHHHHHH
T ss_pred cccccccccccCCCCcchhhhhHHHhc----cCCCCCC----------------------------ChhhccCccHHHHH
Confidence 77776544332222111111000 0000000 01112344578899
Q ss_pred HHhhccCCCCcCCCCCHHHHHHHHHHH
Q 005045 679 RIGLMCSTTSPRERIAMNVVVNNLKTI 705 (717)
Q Consensus 679 ~li~~cl~~~p~~Rps~~eil~~l~~i 705 (717)
+++.+||+.+|++||||+||++.|++|
T Consensus 274 ~li~~cl~~dP~~Rps~~~i~~~L~~i 300 (301)
T 3q4u_A 274 KLMKECWYQNPSARLTALRIKKTLTKI 300 (301)
T ss_dssp HHHHHHCCSSGGGSCCHHHHHHHHHHH
T ss_pred HHHHHHhhcChhhCCCHHHHHHHHhcc
Confidence 999999999999999999999999876
No 61
>3sxs_A Cytoplasmic tyrosine-protein kinase BMX; transferase-transferase inhibitor complex; HET: PP2; 1.89A {Homo sapiens} SCOP: d.144.1.7 PDB: 3sxr_A*
Probab=100.00 E-value=6.4e-41 Score=339.97 Aligned_cols=262 Identities=23% Similarity=0.404 Sum_probs=208.1
Q ss_pred ccccccccccccccCcccccceEEEEeCCCchhhhHHhHhhhhhHHHHHHHHHHHHhcCCCCceeEEEEeeccccCCCCc
Q 005045 384 ISKSTDNFSKENLIGTGSFGSVYKGTLGDGTIVAIKVLKLQQQGALKSFIDECNALKSTRHRNILRVITACSSVDLEGND 463 (717)
Q Consensus 384 ~~~~~~~y~~~~~ig~g~~g~v~~~~~~~~~~vavK~~~~~~~~~~~~~~~e~~~l~~l~h~ni~~~~~~~~~~~~~~~~ 463 (717)
+....++|++.+.||+|+||.||+|.+++++.||+|++...... .+.+.+|++++++++||||+++++++ .+..
T Consensus 3 ~~l~~~~y~~~~~lg~G~~g~V~~~~~~~~~~vavK~~~~~~~~-~~~~~~E~~~l~~l~h~~i~~~~~~~-----~~~~ 76 (268)
T 3sxs_A 3 MELKREEITLLKELGSGQFGVVKLGKWKGQYDVAVKMIKEGSMS-EDEFFQEAQTMMKLSHPKLVKFYGVC-----SKEY 76 (268)
T ss_dssp TBCCGGGEEEEEEEEEETTEEEEEEEETTTEEEEEEEECBTTBC-HHHHHHHHHHHHHCCCTTBCCEEEEE-----CSSS
T ss_pred eEechhheeeeeeeccCCCceEEEEEecCceeEEEEEeccCCCc-HHHHHHHHHHHHhCCCCCEeeEEEEE-----ccCC
Confidence 44567899999999999999999999888888999998754332 36688999999999999999999995 4456
Q ss_pred eEEEEEecCCCCChhhhccCCCCCcccccccCHHHHHHHHHHHHHHHHHHHhcCCCCeeecCCCCCCEEeCCCCceEEee
Q 005045 464 FKALVFEFMSNGNLDQWLHPSPAEHYQFKKLSVIQRLNIAIDVASALDYLHHHCDTPIAHCDLKPSNVLLDKDMTAHVGD 543 (717)
Q Consensus 464 ~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~dlkp~NIll~~~~~~kl~D 543 (717)
..++||||+++++|.+++.... ..+++..+..++.|++.|++|||+. +++||||||+||+++.++.+||+|
T Consensus 77 ~~~lv~e~~~~~~L~~~l~~~~------~~~~~~~~~~i~~qi~~~l~~lH~~---~i~H~dikp~Nil~~~~~~~~l~D 147 (268)
T 3sxs_A 77 PIYIVTEYISNGCLLNYLRSHG------KGLEPSQLLEMCYDVCEGMAFLESH---QFIHRDLAARNCLVDRDLCVKVSD 147 (268)
T ss_dssp SEEEEEECCTTCBHHHHHHHHG------GGCCHHHHHHHHHHHHHHHHHHHHT---TEEESSCSGGGEEECTTCCEEECC
T ss_pred ceEEEEEccCCCcHHHHHHHcC------CCCCHHHHHHHHHHHHHHHHHHHHC---CeecCCcCcceEEECCCCCEEEcc
Confidence 8999999999999999987532 4589999999999999999999998 999999999999999999999999
Q ss_pred eccchhcccccCCCCCCcceeecccccccccCCCccCC-CCCcccchhhHHHHHHHHHh-CCCCCCCCCCCchhhhHHHH
Q 005045 544 FGLAKFLFEISDNPSKNQTVSIGLKGSIGYIPPEHMNG-QVSILGDIYSYGILLLEMFT-GKRPTGDMFKDDFSIHMFVS 621 (717)
Q Consensus 544 fg~~~~~~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~-~~~~~sDvwslG~vl~ellt-g~~p~~~~~~~~~~~~~~~~ 621 (717)
||.+..... ..........++..|+|||++.+ .++.++|||||||++|+|++ |..||......... ...
T Consensus 148 fg~~~~~~~------~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~~g~~p~~~~~~~~~~--~~~- 218 (268)
T 3sxs_A 148 FGMTRYVLD------DQYVSSVGTKFPVKWSAPEVFHYFKYSSKSDVWAFGILMWEVFSLGKMPYDLYTNSEVV--LKV- 218 (268)
T ss_dssp TTCEEECCT------TCEEECCSCCCCGGGCCHHHHHHSEEETTHHHHHHHHHHHHHHTTTCCTTTTSCHHHHH--HHH-
T ss_pred Cccceecch------hhhhcccCCCcCcccCCHHHHhccCCchhhhhHHHHHHHHHHHcCCCCCccccChHHHH--HHH-
Confidence 999976521 11222233456778999999765 58999999999999999999 99999654222110 000
Q ss_pred hcCChhhhhhcCCCCCCCCCCcHHHHHHHHHHHHHHhhhhhhhcchhhhHHHHHHHHHHhhccCCCCcCCCCCHHHHHHH
Q 005045 622 MALPDHVMDILDPSMPLDEENDEEQIEEVIEEKEMMIHIDLEVNTKNKLEECFVSVLRIGLMCSTTSPRERIAMNVVVNN 701 (717)
Q Consensus 622 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~cl~~~p~~Rps~~eil~~ 701 (717)
....... .+..++..+.+++.+||+.+|++|||++|+++.
T Consensus 219 ----------~~~~~~~------------------------------~~~~~~~~l~~li~~~l~~~p~~Rps~~~ll~~ 258 (268)
T 3sxs_A 219 ----------SQGHRLY------------------------------RPHLASDTIYQIMYSCWHELPEKRPTFQQLLSS 258 (268)
T ss_dssp ----------HTTCCCC------------------------------CCTTSCHHHHHHHHHTTCSSGGGSCCHHHHHHH
T ss_pred ----------HcCCCCC------------------------------CCCcChHHHHHHHHHHcCCChhhCcCHHHHHHH
Confidence 0000000 001114567889999999999999999999999
Q ss_pred HHHHHHHH
Q 005045 702 LKTIRNCF 709 (717)
Q Consensus 702 l~~i~~~~ 709 (717)
|+.++++.
T Consensus 259 L~~l~~~~ 266 (268)
T 3sxs_A 259 IEPLREKD 266 (268)
T ss_dssp HGGGCC--
T ss_pred HHHhhhcc
Confidence 99987553
No 62
>3vhe_A Vascular endothelial growth factor receptor 2; kinase domain, kinase, transferase-transferase inhibitor COM; HET: 42Q; 1.55A {Homo sapiens} PDB: 1y6a_A* 1y6b_A* 3vhk_A* 3vid_A* 3hng_A*
Probab=100.00 E-value=3.3e-40 Score=349.86 Aligned_cols=281 Identities=21% Similarity=0.326 Sum_probs=217.3
Q ss_pred ccCCCCcccccccccccccccccCcccccceEEEEe------CCCchhhhHHhHhhh-hhHHHHHHHHHHHHhcC-CCCc
Q 005045 375 RQSGMSYSDISKSTDNFSKENLIGTGSFGSVYKGTL------GDGTIVAIKVLKLQQ-QGALKSFIDECNALKST-RHRN 446 (717)
Q Consensus 375 ~~~~~s~~~~~~~~~~y~~~~~ig~g~~g~v~~~~~------~~~~~vavK~~~~~~-~~~~~~~~~e~~~l~~l-~h~n 446 (717)
....+....+....++|++.+.||+|+||.||+|++ .+++.||+|++.... ....+.+.+|+++++++ +|||
T Consensus 8 ~~~~~~~~~~~~~~~~y~~~~~lG~G~~g~Vy~~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~~hpn 87 (359)
T 3vhe_A 8 ERLPYDASKWEFPRDRLKLGKPLGRGAFGQVIEADAFGIDKTATCRTVAVKMLKEGATHSEHRALMSELKILIHIGHHLN 87 (359)
T ss_dssp GGSCCCHHHHBCCGGGEEEEEEEEECSSEEEEEEEEESSSSTTCEEEEEEEEECTTCCHHHHHHHHHHHHHHHHHCCCTT
T ss_pred hhCCCCcccccccccceeeceeecCCCCceEEEEEeccccccccceEEEEEEecCcCCHHHHHHHHHHHHHHHhhcCCcc
Confidence 344566777788899999999999999999999973 256889999987542 33457789999999999 8999
Q ss_pred eeEEEEeeccccCCCCceEEEEEecCCCCChhhhccCCCCCcc-------------------------------------
Q 005045 447 ILRVITACSSVDLEGNDFKALVFEFMSNGNLDQWLHPSPAEHY------------------------------------- 489 (717)
Q Consensus 447 i~~~~~~~~~~~~~~~~~~~lv~e~~~~~~L~~~l~~~~~~~~------------------------------------- 489 (717)
|+++++++.. .+...++||||+++++|.+++........
T Consensus 88 iv~~~~~~~~----~~~~~~iv~e~~~~g~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 163 (359)
T 3vhe_A 88 VVNLLGACTK----PGGPLMVIVEFCKFGNLSTYLRSKRNEFVPYKTKGARFRQGKDYVGAIPVDLKRRLDSITSSQSSA 163 (359)
T ss_dssp BCCEEEEECS----TTSCCEEEEECCTTEEHHHHHHTTTTSBCSCC----------------------------------
T ss_pred eeeeeeeeec----CCCceEEEEEecCCCcHHHHHHhccccccccccccchhhcccccccccchhhhccccccCcccccc
Confidence 9999999743 34568999999999999999976532100
Q ss_pred ----------------------cccccCHHHHHHHHHHHHHHHHHHHhcCCCCeeecCCCCCCEEeCCCCceEEeeeccc
Q 005045 490 ----------------------QFKKLSVIQRLNIAIDVASALDYLHHHCDTPIAHCDLKPSNVLLDKDMTAHVGDFGLA 547 (717)
Q Consensus 490 ----------------------~~~~~~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~dlkp~NIll~~~~~~kl~Dfg~~ 547 (717)
....+++..+..++.||+.||+|||+. +|+||||||+||+++.++.+||+|||.+
T Consensus 164 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ql~~aL~~LH~~---~ivH~Dikp~NIll~~~~~~kl~Dfg~a 240 (359)
T 3vhe_A 164 SSGFVEEKSLSDVEEEEAPEDLYKDFLTLEHLICYSFQVAKGMEFLASR---KCIHRDLAARNILLSEKNVVKICDFGLA 240 (359)
T ss_dssp --------------------CTTTTCBCHHHHHHHHHHHHHHHHHHHHT---TCCCSCCSGGGEEECGGGCEEECCCGGG
T ss_pred ccccccccccchhhhcccccchhccccCHHHHHHHHHHHHHHHHHHHHC---CcccCCCChhhEEEcCCCcEEEEeccce
Confidence 012289999999999999999999998 9999999999999999999999999999
Q ss_pred hhcccccCCCCCCcceeecccccccccCCCccC-CCCCcccchhhHHHHHHHHHh-CCCCCCCCCCCchhhhHHHHhcCC
Q 005045 548 KFLFEISDNPSKNQTVSIGLKGSIGYIPPEHMN-GQVSILGDIYSYGILLLEMFT-GKRPTGDMFKDDFSIHMFVSMALP 625 (717)
Q Consensus 548 ~~~~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~-~~~~~~sDvwslG~vl~ellt-g~~p~~~~~~~~~~~~~~~~~~~~ 625 (717)
...... ..........+|+.|+|||++. +.++.++|||||||++|+|++ |..||.......... ......
T Consensus 241 ~~~~~~-----~~~~~~~~~~~t~~y~aPE~~~~~~~~~~~Di~slG~il~ellt~g~~p~~~~~~~~~~~-~~~~~~-- 312 (359)
T 3vhe_A 241 RDIYKD-----PDYVRKGDARLPLKWMAPETIFDRVYTIQSDVWSFGVLLWEIFSLGASPYPGVKIDEEFC-RRLKEG-- 312 (359)
T ss_dssp SCTTSC-----TTCEEC--CEECGGGCCHHHHHHCCCCHHHHHHHHHHHHHHHTTTSCCSSTTCCCSHHHH-HHHHHT--
T ss_pred eeeccc-----ccchhccccCCCceeEChhhhcCCCCCchhhhhhHHHHHHHHHhcCCCCCCccchhHHHH-HHHHcC--
Confidence 865211 1122334456888999999964 458999999999999999998 999997654332111 111110
Q ss_pred hhhhhhcCCCCCCCCCCcHHHHHHHHHHHHHHhhhhhhhcchhhhHHHHHHHHHHhhccCCCCcCCCCCHHHHHHHHHHH
Q 005045 626 DHVMDILDPSMPLDEENDEEQIEEVIEEKEMMIHIDLEVNTKNKLEECFVSVLRIGLMCSTTSPRERIAMNVVVNNLKTI 705 (717)
Q Consensus 626 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~cl~~~p~~Rps~~eil~~l~~i 705 (717)
..... +..++..+.+++.+||+.+|++||||+||++.|+.+
T Consensus 313 ------~~~~~---------------------------------~~~~~~~l~~li~~~l~~dP~~Rps~~ell~~L~~~ 353 (359)
T 3vhe_A 313 ------TRMRA---------------------------------PDYTTPEMYQTMLDCWHGEPSQRPTFSELVEHLGNL 353 (359)
T ss_dssp ------CCCCC---------------------------------CTTCCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHH
T ss_pred ------CCCCC---------------------------------CCCCCHHHHHHHHHHccCChhhCCCHHHHHHHHHHH
Confidence 00001 111245678999999999999999999999999999
Q ss_pred HHHH
Q 005045 706 RNCF 709 (717)
Q Consensus 706 ~~~~ 709 (717)
.+..
T Consensus 354 ~~~~ 357 (359)
T 3vhe_A 354 LQAN 357 (359)
T ss_dssp HHHH
T ss_pred HHHh
Confidence 8653
No 63
>4hcu_A Tyrosine-protein kinase ITK/TSK; transferase-transferase inhibitor complex; HET: 13L; 1.43A {Homo sapiens} PDB: 4hct_A* 4hcv_A* 3t9t_A* 1sm2_A* 1snu_A* 1snx_A 3v5l_A* 3v5j_A* 3v8t_A* 3v8w_A* 3qgw_A* 3qgy_A* 3miy_A* 3mj1_A* 3mj2_A*
Probab=100.00 E-value=2.4e-40 Score=335.93 Aligned_cols=260 Identities=25% Similarity=0.411 Sum_probs=208.0
Q ss_pred cccccccccccccCcccccceEEEEeCCCchhhhHHhHhhhhhHHHHHHHHHHHHhcCCCCceeEEEEeeccccCCCCce
Q 005045 385 SKSTDNFSKENLIGTGSFGSVYKGTLGDGTIVAIKVLKLQQQGALKSFIDECNALKSTRHRNILRVITACSSVDLEGNDF 464 (717)
Q Consensus 385 ~~~~~~y~~~~~ig~g~~g~v~~~~~~~~~~vavK~~~~~~~~~~~~~~~e~~~l~~l~h~ni~~~~~~~~~~~~~~~~~ 464 (717)
....++|++.+.||+|+||.||+|.+.+++.||+|++...... .+.+.+|++++++++||||+++++++ .+.+.
T Consensus 6 ~i~~~~y~~~~~lg~G~~g~V~~~~~~~~~~vavK~~~~~~~~-~~~~~~E~~~l~~l~h~~i~~~~~~~-----~~~~~ 79 (269)
T 4hcu_A 6 VIDPSELTFVQEIGSGQFGLVHLGYWLNKDKVAIKTIREGAMS-EEDFIEEAEVMMKLSHPKLVQLYGVC-----LEQAP 79 (269)
T ss_dssp BCCGGGEEEEEEEEECSSCEEEEEEETTTEEEEEEEECTTSBC-HHHHHHHHHHHHTCCCTTBCCEEEEE-----CSSSS
T ss_pred EeChhhceeeheecCCCccEEEEEEecCCCeEEEEEecccccC-HHHHHHHHHHHHhCCCCCEeeEEEEE-----ecCCc
Confidence 3456789999999999999999999888889999998754322 36788999999999999999999995 34557
Q ss_pred EEEEEecCCCCChhhhccCCCCCcccccccCHHHHHHHHHHHHHHHHHHHhcCCCCeeecCCCCCCEEeCCCCceEEeee
Q 005045 465 KALVFEFMSNGNLDQWLHPSPAEHYQFKKLSVIQRLNIAIDVASALDYLHHHCDTPIAHCDLKPSNVLLDKDMTAHVGDF 544 (717)
Q Consensus 465 ~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~dlkp~NIll~~~~~~kl~Df 544 (717)
.++||||+++++|.+++.... ..+++..+..++.|++.|++|||+. +++||||||+||+++.++.+||+||
T Consensus 80 ~~lv~e~~~~~~L~~~l~~~~------~~~~~~~~~~i~~~i~~~l~~lH~~---~i~H~dikp~Nil~~~~~~~kl~Df 150 (269)
T 4hcu_A 80 ICLVFEFMEHGCLSDYLRTQR------GLFAAETLLGMCLDVCEGMAYLEEA---CVIHRDLAARNCLVGENQVIKVSDF 150 (269)
T ss_dssp EEEEEECCTTCBHHHHHHTTT------TCCCHHHHHHHHHHHHHHHHHHHHT---TCCCSCCCGGGEEECGGGCEEECCT
T ss_pred eEEEEEeCCCCcHHHHHHhcC------cccCHHHHHHHHHHHHHHHHHHHhC---CeecCCcchheEEEcCCCCEEeccc
Confidence 999999999999999997543 5689999999999999999999998 9999999999999999999999999
Q ss_pred ccchhcccccCCCCCCcceeecccccccccCCCccC-CCCCcccchhhHHHHHHHHHh-CCCCCCCCCCCchhhhHHHHh
Q 005045 545 GLAKFLFEISDNPSKNQTVSIGLKGSIGYIPPEHMN-GQVSILGDIYSYGILLLEMFT-GKRPTGDMFKDDFSIHMFVSM 622 (717)
Q Consensus 545 g~~~~~~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~-~~~~~~sDvwslG~vl~ellt-g~~p~~~~~~~~~~~~~~~~~ 622 (717)
|.+....... ........++..|+|||++. +.++.++||||+||++|+|++ |..||....... .......
T Consensus 151 g~~~~~~~~~------~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~~l~~ll~~g~~p~~~~~~~~--~~~~~~~ 222 (269)
T 4hcu_A 151 GMTRFVLDDQ------YTSSTGTKFPVKWASPEVFSFSRYSSKSDVWSFGVLMWEVFSEGKIPYENRSNSE--VVEDIST 222 (269)
T ss_dssp TGGGGBCCHH------HHSTTSTTCCGGGCCHHHHHHCCCCHHHHHHHHHHHHHHHHTTSCCTTTTCCHHH--HHHHHHT
T ss_pred cccccccccc------cccccCcccccccCCHHHhcCCCCCchhhhHHHHHHHHHHhcCCCCCCCCCCHHH--HHHHHhc
Confidence 9998652211 11122344677899999965 568999999999999999999 999997542211 1111110
Q ss_pred cCChhhhhhcCCCCCCCCCCcHHHHHHHHHHHHHHhhhhhhhcchhhhHHHHHHHHHHhhccCCCCcCCCCCHHHHHHHH
Q 005045 623 ALPDHVMDILDPSMPLDEENDEEQIEEVIEEKEMMIHIDLEVNTKNKLEECFVSVLRIGLMCSTTSPRERIAMNVVVNNL 702 (717)
Q Consensus 623 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~cl~~~p~~Rps~~eil~~l 702 (717)
. ..... +..++..+.+++.+||+.+|++|||++|+++.|
T Consensus 223 ~--------~~~~~---------------------------------~~~~~~~~~~li~~~l~~~p~~Rps~~~ll~~l 261 (269)
T 4hcu_A 223 G--------FRLYK---------------------------------PRLASTHVYQIMNHCWRERPEDRPAFSRLLRQL 261 (269)
T ss_dssp T--------CCCCC---------------------------------CTTSCHHHHHHHHHHTCSSGGGSCCHHHHHHHH
T ss_pred C--------ccCCC---------------------------------CCcCCHHHHHHHHHHccCCcccCcCHHHHHHHH
Confidence 0 00000 011245678999999999999999999999999
Q ss_pred HHHHHH
Q 005045 703 KTIRNC 708 (717)
Q Consensus 703 ~~i~~~ 708 (717)
+++.++
T Consensus 262 ~~l~~~ 267 (269)
T 4hcu_A 262 AEIAES 267 (269)
T ss_dssp HHHHHC
T ss_pred HHHHHc
Confidence 999864
No 64
>3op5_A Serine/threonine-protein kinase VRK1; adenosine triphosphate, amino acid sequence, binding sites, domain, models, molecular; HET: REB; 2.40A {Homo sapiens} PDB: 2lav_A 2kty_A 2kul_A
Probab=100.00 E-value=2e-40 Score=351.77 Aligned_cols=279 Identities=17% Similarity=0.242 Sum_probs=208.9
Q ss_pred cccccccccccCcccccceEEEEeCC------CchhhhHHhHhhhhh-----------HHHHHHHHHHHHhcCCCCceeE
Q 005045 387 STDNFSKENLIGTGSFGSVYKGTLGD------GTIVAIKVLKLQQQG-----------ALKSFIDECNALKSTRHRNILR 449 (717)
Q Consensus 387 ~~~~y~~~~~ig~g~~g~v~~~~~~~------~~~vavK~~~~~~~~-----------~~~~~~~e~~~l~~l~h~ni~~ 449 (717)
..++|++.+.||+|+||.||+|.++. ++.||+|++...... ....+..|+..++.+.||||++
T Consensus 33 ~~~~y~~~~~lG~G~~g~Vy~~~~~~~~~~~~~~~vavK~~~~~~~~~~~e~~~~~~~~~~~~~~e~~~~~~l~h~~iv~ 112 (364)
T 3op5_A 33 AAAAWKVGLPIGQGGFGCIYLADMNSSESVGSDAPCVVKVEPSDNGPLFTELKFYQRAAKPEQIQKWIRTRKLKYLGVPK 112 (364)
T ss_dssp TCCEEEEEEECCCC-CCEEEEEEECCSSCCCTTCSEEEEEEETTCHHHHHHHHHHHHHCCHHHHHHHHHHTTCSCCCSCC
T ss_pred CCCeEEEEEEEecCCCeEEEEeeecCccccccccceEEEEeeccchhHHHHHHHHHhhhhhHHHHHHHHHhhccCCCCCe
Confidence 46699999999999999999999753 478999987543211 1123445677788889999999
Q ss_pred EEEeeccccCCCCceEEEEEecCCCCChhhhccCCCCCcccccccCHHHHHHHHHHHHHHHHHHHhcCCCCeeecCCCCC
Q 005045 450 VITACSSVDLEGNDFKALVFEFMSNGNLDQWLHPSPAEHYQFKKLSVIQRLNIAIDVASALDYLHHHCDTPIAHCDLKPS 529 (717)
Q Consensus 450 ~~~~~~~~~~~~~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~dlkp~ 529 (717)
+++++.... ......++||||+ +++|.+++.... ..+++..+..++.||+.||+|||+. +|+||||||+
T Consensus 113 ~~~~~~~~~-~~~~~~~lv~e~~-g~~L~~~~~~~~------~~l~~~~~~~i~~qi~~~l~~lH~~---~iiHrDlkp~ 181 (364)
T 3op5_A 113 YWGSGLHDK-NGKSYRFMIMDRF-GSDLQKIYEANA------KRFSRKTVLQLSLRILDILEYIHEH---EYVHGDIKAS 181 (364)
T ss_dssp EEEEEEEEE-TTEEEEEEEEECE-EEEHHHHHHHTT------SCCCHHHHHHHHHHHHHHHHHHHHT---TEECCCCCGG
T ss_pred EEeeeeecc-CCcceEEEEEeCC-CCCHHHHHHhcc------CCCCHHHHHHHHHHHHHHHHHHHHC---CeEEecCCHH
Confidence 999975532 2235689999999 999999987542 5689999999999999999999998 9999999999
Q ss_pred CEEeC--CCCceEEeeeccchhcccccCCCCCCcceeecccccccccCCCccCCC-CCcccchhhHHHHHHHHHhCCCCC
Q 005045 530 NVLLD--KDMTAHVGDFGLAKFLFEISDNPSKNQTVSIGLKGSIGYIPPEHMNGQ-VSILGDIYSYGILLLEMFTGKRPT 606 (717)
Q Consensus 530 NIll~--~~~~~kl~Dfg~~~~~~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~-~~~~sDvwslG~vl~elltg~~p~ 606 (717)
||+++ .++.+||+|||+++.+..................||+.|+|||++.+. ++.++|||||||++|||++|..||
T Consensus 182 Nill~~~~~~~~kl~DFG~a~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Di~slG~~l~el~~g~~Pf 261 (364)
T 3op5_A 182 NLLLNYKNPDQVYLVDYGLAYRYCPEGVHKAYAADPKRCHDGTIEFTSIDAHNGVAPSRRGDLEILGYCMIQWLTGHLPW 261 (364)
T ss_dssp GEEEESSCTTCEEECCCTTCEESSGGGCCCCSSCCSSCCCCCCTTTCCHHHHTTCCCCHHHHHHHHHHHHHHHHHSCCTT
T ss_pred HEEEecCCCCeEEEEECCcceecccCCcccccccCcccccCCCCCccCHHHhCCCCCCchhhHHHHHHHHHHHHhCCCCc
Confidence 99999 889999999999987644332222222223445699999999997664 899999999999999999999999
Q ss_pred CCCCCCchhhhHHHHhcCChhhhhhcCCCCCCCCCCcHHHHHHHHHHHHHHhhhhhhhcchhhhHHHHHHHHHHhhccCC
Q 005045 607 GDMFKDDFSIHMFVSMALPDHVMDILDPSMPLDEENDEEQIEEVIEEKEMMIHIDLEVNTKNKLEECFVSVLRIGLMCST 686 (717)
Q Consensus 607 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~cl~ 686 (717)
........ .........+..+..++++.+. ...++..+.+++.+||+
T Consensus 262 ~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~--------------------------------~~~~~~~~~~li~~cl~ 308 (364)
T 3op5_A 262 EDNLKDPK-YVRDSKIRYRENIASLMDKCFP--------------------------------AANAPGEIAKYMETVKL 308 (364)
T ss_dssp GGGTTCHH-HHHHHHHHHHHCHHHHHHHHSC--------------------------------TTCCCHHHHHHHHHHHT
T ss_pred cccccCHH-HHHHHHHHhhhhHHHHHHHhcc--------------------------------cccCHHHHHHHHHHHhc
Confidence 75332211 1111111111111111111110 01236678999999999
Q ss_pred CCcCCCCCHHHHHHHHHHHHHHH
Q 005045 687 TSPRERIAMNVVVNNLKTIRNCF 709 (717)
Q Consensus 687 ~~p~~Rps~~eil~~l~~i~~~~ 709 (717)
.+|++||++++|++.|+.+.++.
T Consensus 309 ~~p~~RP~~~~l~~~l~~~~~~~ 331 (364)
T 3op5_A 309 LDYTEKPLYENLRDILLQGLKAI 331 (364)
T ss_dssp CCTTCCCCHHHHHHHHHHHHHHT
T ss_pred CCCCCCCCHHHHHHHHHHHHHHc
Confidence 99999999999999999998764
No 65
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=100.00 E-value=6.5e-39 Score=361.97 Aligned_cols=356 Identities=19% Similarity=0.171 Sum_probs=278.4
Q ss_pred cEEEcCCCcCcCCCCcCCcCCCCCCEEECCCCcccccCCcCCCCCCCCCEEEccCccccccCCccccCCCCCCEEeccCC
Q 005045 13 QDLNLTYNYLSGKIPTNLSHCTELRSFEASVNDFVGQIPNQLSSLTKLEIIGLGGSNLTGNVPAWIGNFSSLKALSLAWN 92 (717)
Q Consensus 13 ~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n 92 (717)
.+++.++.+++ .+|..+. ++++.|+|++|.+++..+..|.++++|++|+|++|.+++..|..|.++++|++|+|++|
T Consensus 10 ~~~~c~~~~l~-~ip~~l~--~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n 86 (570)
T 2z63_A 10 ITYQCMELNFY-KIPDNLP--FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGN 86 (570)
T ss_dssp TEEECCSSCCS-SCCSSSC--SSCCEEECCSCCCCEECTTTTTTCSSCCEEECTTCCCCEECTTTTTTCTTCCEEECTTC
T ss_pred cEEEeCCCCcc-ccCCCcc--ccccEEEccCCccCccChhHhhCCCCceEEECCCCcCCccCcccccCchhCCEEeCcCC
Confidence 56888999998 6787664 68999999999999888889999999999999999999888889999999999999999
Q ss_pred cCcccCChhhhccCCCCeEeccCCCCCCCCCccccCCCCccEEEcccCcccc-cCCcccccCCCCcceeecccccccccC
Q 005045 93 NLRGSIPNELGQLSGLGFFTLYGNFISGIIPSSIYNISSIYYFSVTQNQLHG-QLPTDVGLTLPNLKIFAGAVNYFTGSI 171 (717)
Q Consensus 93 ~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~-~l~~~~~~~l~~L~~L~l~~n~l~~~~ 171 (717)
++++..|.+|.++++|++|+|++|.++++.+..|+++++|++|+|++|.+++ .+|..+ ..+++|+.|++++|.+++..
T Consensus 87 ~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~-~~l~~L~~L~l~~n~l~~~~ 165 (570)
T 2z63_A 87 PIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYF-SNLTNLEHLDLSSNKIQSIY 165 (570)
T ss_dssp CCCEECTTTTTTCTTCCEEECTTSCCCCSTTCSCTTCTTCCEEECCSSCCCCCCCCGGG-GGCTTCCEEECTTSCCCEEC
T ss_pred cCCccCHhhhcCccccccccccccccccCCCccccccccccEEecCCCccceecChhhh-cccCCCCEEeCcCCccceec
Confidence 9998888999999999999999999998777789999999999999999984 356554 48999999999999988765
Q ss_pred CccCCCCCCC----CEEeccCcccccc-----------------------------------------------------
Q 005045 172 PVSLSNASNL----QVLDFAENGLTGT----------------------------------------------------- 194 (717)
Q Consensus 172 ~~~~~~l~~L----~~L~l~~N~l~~~----------------------------------------------------- 194 (717)
+..++.+++| ..|++++|.+++.
T Consensus 166 ~~~~~~l~~L~~~~~~L~l~~n~l~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~~l~~ 245 (570)
T 2z63_A 166 CTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEK 245 (570)
T ss_dssp GGGGHHHHTCTTCCCEEECTTCCCCEECTTTTTTCEEEEEEEESCCSCTTHHHHHHHTTTTCEEEEEEEEECCCCSSCEE
T ss_pred HHHccchhccchhhhhcccCCCCceecCHHHhccCcceeEecccccccccchhhhhcCccccceeeeccccccCchhhhh
Confidence 5555544444 4555555544332
Q ss_pred ---------------------------------------------------CCCCccCCCCCCeeeccccccCCcccCch
Q 005045 195 ---------------------------------------------------IPGNFGSLKDLVRLNFDQNELGSREIGDL 223 (717)
Q Consensus 195 ---------------------------------------------------~~~~~~~l~~L~~L~l~~N~l~~~~~~~~ 223 (717)
+|..+..+ +|+.|++++|.+..++...+
T Consensus 246 ~~~~~~~~l~~l~l~~l~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~l~~~~~~~-~L~~L~l~~n~~~~l~~~~l 324 (570)
T 2z63_A 246 FDKSALEGLCNLTIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIERVKDFSYNF-GWQHLELVNCKFGQFPTLKL 324 (570)
T ss_dssp CCTTTTGGGGGSEEEEEEEEETTEEESCSTTTTGGGTTCSEEEEESCEECSCCBCCSCC-CCSEEEEESCBCSSCCBCBC
T ss_pred cchhhhccccccchhhhhhhcchhhhhhchhhhcCcCcccEEEecCccchhhhhhhccC-CccEEeeccCcccccCcccc
Confidence 33333333 44444444444443332111
Q ss_pred hhhh-------------hhccCCCCCEEEeecCcccCcC--chhhhhccccccEEecCCCccCCCCCccccCCCCCCEEE
Q 005045 224 NFLK-------------FLANCTSLEVLGLARNSFGGEM--PISIANLSTHLRRLTMGENLMHGNIPVGIGNLVNLNLLG 288 (717)
Q Consensus 224 ~~~~-------------~~~~l~~L~~L~L~~N~l~~~~--p~~~~~~~~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~ 288 (717)
.... ....+++|++|++++|.+++.. |..+..+ ++|++|++++|.+.+..+ .+.++++|+.|+
T Consensus 325 ~~L~~L~l~~n~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~-~~L~~L~l~~n~l~~~~~-~~~~l~~L~~L~ 402 (570)
T 2z63_A 325 KSLKRLTFTSNKGGNAFSEVDLPSLEFLDLSRNGLSFKGCCSQSDFGT-TSLKYLDLSFNGVITMSS-NFLGLEQLEHLD 402 (570)
T ss_dssp SSCCEEEEESCBSCCBCCCCBCTTCCEEECCSSCCBEEEEEEHHHHTC-SCCCEEECCSCSEEEEEE-EEETCTTCCEEE
T ss_pred cccCEEeCcCCccccccccccCCCCCEEeCcCCccCcccccccccccc-CccCEEECCCCccccccc-cccccCCCCEEE
Confidence 0000 0146789999999999998543 6777777 589999999998885444 488888888888
Q ss_pred ccCCcCccccc-hhhhcCCCCCeEEcccCcCCCCCCcccccccccceeeccccccc-ccCCcCccCcCCCceEEeecccC
Q 005045 289 LEGNNLSGSVP-EVIGRLNKLEGLGLNVNKFSGLIPSSLGNLTILTRLWMEENRLE-GSIPPSLGNCQKLLVLNLSSNDL 366 (717)
Q Consensus 289 L~~N~l~~~~~-~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~-~~~p~~~~~l~~L~~L~l~~N~l 366 (717)
+++|++.+..+ ..+..+++|++|++++|.+++..|..|.++++|+.|+|++|+++ +.+|..+..+++|+.|++++|.+
T Consensus 403 l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~p~~~~~l~~L~~L~l~~n~l 482 (570)
T 2z63_A 403 FQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQL 482 (570)
T ss_dssp CTTSEEESCTTSCTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCC
T ss_pred ccCCccccccchhhhhcCCCCCEEeCcCCcccccchhhhhcCCcCcEEECcCCcCccccchhhhhcccCCCEEECCCCcc
Confidence 88888886555 46788888888888888888888888888888888888888887 56888888888888888888888
Q ss_pred CCCCCcccc
Q 005045 367 NGTIPKEVR 375 (717)
Q Consensus 367 ~~~~p~~~~ 375 (717)
++..|..+.
T Consensus 483 ~~~~~~~~~ 491 (570)
T 2z63_A 483 EQLSPTAFN 491 (570)
T ss_dssp CEECTTTTT
T ss_pred ccCChhhhh
Confidence 866665543
No 66
>3cbl_A C-FES, proto-oncogene tyrosine-protein kinase FES/FPS; V-FES, fujinami, avian sarcoma, viral, feline virus, SGC; HET: STU; 1.75A {Homo sapiens} PDB: 3bkb_A* 3cd3_A* 4e93_A*
Probab=100.00 E-value=7.9e-41 Score=356.19 Aligned_cols=265 Identities=26% Similarity=0.426 Sum_probs=208.9
Q ss_pred ccccccccccccccccCcccccceEEEEeC-CCchhhhHHhHhhh-hhHHHHHHHHHHHHhcCCCCceeEEEEeeccccC
Q 005045 382 SDISKSTDNFSKENLIGTGSFGSVYKGTLG-DGTIVAIKVLKLQQ-QGALKSFIDECNALKSTRHRNILRVITACSSVDL 459 (717)
Q Consensus 382 ~~~~~~~~~y~~~~~ig~g~~g~v~~~~~~-~~~~vavK~~~~~~-~~~~~~~~~e~~~l~~l~h~ni~~~~~~~~~~~~ 459 (717)
..+....++|++.+.||+|+||.||+|.++ +++.||+|.+.... ......+.+|++++++++||||+++++++.
T Consensus 107 ~~~~~~~~~~~~~~~lG~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~hpniv~~~~~~~---- 182 (377)
T 3cbl_A 107 DKWVLNHEDLVLGEQIGRGNFGEVFSGRLRADNTLVAVKSCRETLPPDLKAKFLQEARILKQYSHPNIVRLIGVCT---- 182 (377)
T ss_dssp CTTBCCGGGEEEEEEEEEETTEEEEEEEETTTCCEEEEEECCTTSCHHHHTTTTHHHHHHTTCCCTTBCCEEEEEC----
T ss_pred cccEEchHHeEEeeEeccCCCCeEEEEEEecCCeEEEEEEccccCCHHHHHHHHHHHHHHHhCCCCCEEEEEEEEe----
Confidence 345566789999999999999999999976 78999999987442 334567889999999999999999999963
Q ss_pred CCCceEEEEEecCCCCChhhhccCCCCCcccccccCHHHHHHHHHHHHHHHHHHHhcCCCCeeecCCCCCCEEeCCCCce
Q 005045 460 EGNDFKALVFEFMSNGNLDQWLHPSPAEHYQFKKLSVIQRLNIAIDVASALDYLHHHCDTPIAHCDLKPSNVLLDKDMTA 539 (717)
Q Consensus 460 ~~~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~dlkp~NIll~~~~~~ 539 (717)
..+..++||||+++++|.+++.... ..+++..+..++.||+.||+|||+. +|+||||||+||+++.++.+
T Consensus 183 -~~~~~~lv~e~~~~g~L~~~l~~~~------~~~~~~~~~~~~~qi~~~l~~LH~~---~ivHrDlkp~Nil~~~~~~~ 252 (377)
T 3cbl_A 183 -QKQPIYIVMELVQGGDFLTFLRTEG------ARLRVKTLLQMVGDAAAGMEYLESK---CCIHRDLAARNCLVTEKNVL 252 (377)
T ss_dssp -SSSSCEEEEECCTTCBHHHHHHHHG------GGCCHHHHHHHHHHHHHHHHHHHHT---TEECSCCSGGGEEECTTCCE
T ss_pred -cCCCcEEEEEcCCCCCHHHHHHhcC------CCCCHHHHHHHHHHHHHHHHHHHHC---CcCCcccCHHHEEEcCCCcE
Confidence 4457899999999999999987432 4689999999999999999999998 99999999999999999999
Q ss_pred EEeeeccchhcccccCCCCCCcceeecccccccccCCCccC-CCCCcccchhhHHHHHHHHHh-CCCCCCCCCCCchhhh
Q 005045 540 HVGDFGLAKFLFEISDNPSKNQTVSIGLKGSIGYIPPEHMN-GQVSILGDIYSYGILLLEMFT-GKRPTGDMFKDDFSIH 617 (717)
Q Consensus 540 kl~Dfg~~~~~~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~-~~~~~~sDvwslG~vl~ellt-g~~p~~~~~~~~~~~~ 617 (717)
||+|||+++...... .........++..|+|||++. +.++.++|||||||++|||++ |..||....... ..
T Consensus 253 kl~DfG~s~~~~~~~-----~~~~~~~~~~~~~y~aPE~~~~~~~~~~~DvwslG~il~el~t~g~~p~~~~~~~~--~~ 325 (377)
T 3cbl_A 253 KISDFGMSREEADGV-----YAASGGLRQVPVKWTAPEALNYGRYSSESDVWSFGILLWETFSLGASPYPNLSNQQ--TR 325 (377)
T ss_dssp EECCGGGCEECTTSE-----EECCSSCCEEEGGGSCHHHHHHCEEEHHHHHHHHHHHHHHHHTTSCCSSTTSCHHH--HH
T ss_pred EECcCCCceecCCCc-----eeecCCCCCCCcCcCCHhHhccCCCCchhhHHHHHHHHHHHHhCCCCCCCCCCHHH--HH
Confidence 999999987541110 000111123567899999965 458999999999999999998 999997642211 11
Q ss_pred HHHHhcCChhhhhhcCCCCCCCCCCcHHHHHHHHHHHHHHhhhhhhhcchhhhHHHHHHHHHHhhccCCCCcCCCCCHHH
Q 005045 618 MFVSMALPDHVMDILDPSMPLDEENDEEQIEEVIEEKEMMIHIDLEVNTKNKLEECFVSVLRIGLMCSTTSPRERIAMNV 697 (717)
Q Consensus 618 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~cl~~~p~~Rps~~e 697 (717)
....... .. +.+..++..+.+++.+||+.+|++|||++|
T Consensus 326 ~~~~~~~----------~~-------------------------------~~~~~~~~~l~~li~~cl~~dP~~Rps~~~ 364 (377)
T 3cbl_A 326 EFVEKGG----------RL-------------------------------PCPELCPDAVFRLMEQCWAYEPGQRPSFST 364 (377)
T ss_dssp HHHHTTC----------CC-------------------------------CCCTTCCHHHHHHHHHHTCSSGGGSCCHHH
T ss_pred HHHHcCC----------CC-------------------------------CCCCCCCHHHHHHHHHHcCCCchhCcCHHH
Confidence 1111000 00 011223667889999999999999999999
Q ss_pred HHHHHHHHHHH
Q 005045 698 VVNNLKTIRNC 708 (717)
Q Consensus 698 il~~l~~i~~~ 708 (717)
|++.|+.++++
T Consensus 365 i~~~L~~i~~~ 375 (377)
T 3cbl_A 365 IYQELQSIRKR 375 (377)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHhh
Confidence 99999999864
No 67
>1o6l_A RAC-beta serine/threonine protein kinase; protein kinase, transferase, serine/threonine-protein kinase; HET: TPO ANP; 1.6A {Homo sapiens} SCOP: d.144.1.7 PDB: 2jdo_A* 2jdr_A* 2uw9_A* 2x37_A* 2x39_A* 2xh5_A* 3d0e_A* 3e87_A* 3e88_A* 3e8d_A* 1o6k_A* 1mrv_A 1mry_A 1gzn_A 1gzk_A 1gzo_A 3qkl_A* 3ocb_A* 3ow4_A* 3qkk_A* ...
Probab=100.00 E-value=7.8e-40 Score=341.70 Aligned_cols=249 Identities=22% Similarity=0.348 Sum_probs=200.1
Q ss_pred cccccccccccCcccccceEEEEeC-CCchhhhHHhHhh---hhhHHHHHHHHHHHHhcCCCCceeEEEEeeccccCCCC
Q 005045 387 STDNFSKENLIGTGSFGSVYKGTLG-DGTIVAIKVLKLQ---QQGALKSFIDECNALKSTRHRNILRVITACSSVDLEGN 462 (717)
Q Consensus 387 ~~~~y~~~~~ig~g~~g~v~~~~~~-~~~~vavK~~~~~---~~~~~~~~~~e~~~l~~l~h~ni~~~~~~~~~~~~~~~ 462 (717)
..++|++.+.||+|+||.||+|+.+ +|+.||+|++... .......+.+|+++++.++||||+++++++ ...
T Consensus 3 ~~~~y~~~~~lG~G~fg~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~~E~~~l~~l~hp~iv~l~~~~-----~~~ 77 (337)
T 1o6l_A 3 TMNDFDYLKLLGKGTFGKVILVREKATGRYYAMKILRKEVIIAKDEVAHTVTESRVLQNTRHPFLTALKYAF-----QTH 77 (337)
T ss_dssp CGGGEEEEEEEEECSSEEEEEEEETTTCCEEEEEEEEHHHHHHTTCHHHHHHHHHHHHSCCCTTBCCEEEEE-----ECS
T ss_pred ChHHeEEEEEEecCCCeEEEEEEECCCCCEEEEEEEeHHHhhhhhHHHHHHHHHHHHHhCCCCcCcceEEEE-----EeC
Confidence 3578999999999999999999965 7999999998654 233456788999999999999999999985 445
Q ss_pred ceEEEEEecCCCCChhhhccCCCCCcccccccCHHHHHHHHHHHHHHHHHHHhcCCCCeeecCCCCCCEEeCCCCceEEe
Q 005045 463 DFKALVFEFMSNGNLDQWLHPSPAEHYQFKKLSVIQRLNIAIDVASALDYLHHHCDTPIAHCDLKPSNVLLDKDMTAHVG 542 (717)
Q Consensus 463 ~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~dlkp~NIll~~~~~~kl~ 542 (717)
+..|+||||++|++|.+++... ..+++..++.++.||+.||+|||+. +|+||||||+||+++.+|.+||+
T Consensus 78 ~~~~lv~E~~~gg~L~~~l~~~-------~~~~~~~~~~~~~qi~~aL~~LH~~---~ivHrDlkp~NIll~~~g~vkL~ 147 (337)
T 1o6l_A 78 DRLCFVMEYANGGELFFHLSRE-------RVFTEERARFYGAEIVSALEYLHSR---DVVYRDIKLENLMLDKDGHIKIT 147 (337)
T ss_dssp SEEEEEEECCTTCBHHHHHHHH-------SCCCHHHHHHHHHHHHHHHHHHHHT---TCBCCCCCGGGEEECTTSCEEEC
T ss_pred CEEEEEEeCCCCCcHHHHHHhc-------CCCCHHHHHHHHHHHHHHHHHHHHC---CeecCcCCHHHEEECCCCCEEEe
Confidence 6899999999999999998743 5689999999999999999999998 99999999999999999999999
Q ss_pred eeccchhcccccCCCCCCcceeecccccccccCCCccCC-CCCcccchhhHHHHHHHHHhCCCCCCCCCCCchhhhHHHH
Q 005045 543 DFGLAKFLFEISDNPSKNQTVSIGLKGSIGYIPPEHMNG-QVSILGDIYSYGILLLEMFTGKRPTGDMFKDDFSIHMFVS 621 (717)
Q Consensus 543 Dfg~~~~~~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~-~~~~~sDvwslG~vl~elltg~~p~~~~~~~~~~~~~~~~ 621 (717)
|||++..... .........||+.|+|||++.+ .++.++|||||||++|||++|..||...... ......
T Consensus 148 DFG~a~~~~~-------~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~ell~g~~Pf~~~~~~--~~~~~i- 217 (337)
T 1o6l_A 148 DFGLCKEGIS-------DGATMKTFCGTPEYLAPEVLEDNDYGRAVDWWGLGVVMYEMMCGRLPFYNQDHE--RLFELI- 217 (337)
T ss_dssp CCTTCBCSCC-------TTCCBCCCEECGGGCCGGGGSSSCBCTTHHHHHHHHHHHHHHHSSCSSCCSSHH--HHHHHH-
T ss_pred eccchhhccc-------CCCcccccccChhhCChhhhcCCCCCchhhcccchhHHHHHhcCCCCCCCCCHH--HHHHHH-
Confidence 9999875311 1112334679999999999765 4899999999999999999999999653211 111100
Q ss_pred hcCChhhhhhcCCCCCCCCCCcHHHHHHHHHHHHHHhhhhhhhcchhhhHHHHHHHHHHhhccCCCCcCCCC-----CHH
Q 005045 622 MALPDHVMDILDPSMPLDEENDEEQIEEVIEEKEMMIHIDLEVNTKNKLEECFVSVLRIGLMCSTTSPRERI-----AMN 696 (717)
Q Consensus 622 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~cl~~~p~~Rp-----s~~ 696 (717)
....... +..++..+.+++.+||+.+|++|| +++
T Consensus 218 ----------~~~~~~~-------------------------------p~~~s~~~~~li~~lL~~dP~~R~g~~~~~~~ 256 (337)
T 1o6l_A 218 ----------LMEEIRF-------------------------------PRTLSPEAKSLLAGLLKKDPKQRLGGGPSDAK 256 (337)
T ss_dssp ----------HHCCCCC-------------------------------CTTSCHHHHHHHHHHTCSSTTTSTTCSTTTHH
T ss_pred ----------HcCCCCC-------------------------------CCCCCHHHHHHHHHHhhcCHHHhcCCCCCCHH
Confidence 0001100 011245678899999999999999 899
Q ss_pred HHHHH
Q 005045 697 VVVNN 701 (717)
Q Consensus 697 eil~~ 701 (717)
||++.
T Consensus 257 ei~~h 261 (337)
T 1o6l_A 257 EVMEH 261 (337)
T ss_dssp HHHTS
T ss_pred HHHcC
Confidence 98753
No 68
>2izr_A Casein kinase I isoform gamma-3; serine/threonine-protein kinase, transferase, ATP- binding, phosphorylation, nucleotide-binding; HET: BRK; 1.3A {Homo sapiens} PDB: 2izs_A* 2izt_A* 2izu_A* 2chl_A* 2c47_A* 2cmw_A*
Probab=100.00 E-value=7.1e-40 Score=342.78 Aligned_cols=269 Identities=19% Similarity=0.238 Sum_probs=208.4
Q ss_pred cccccccccccCcccccceEEEEe-CCCchhhhHHhHhhhhhHHHHHHHHHHHHhcC-CCCceeEEEEeeccccCCCCce
Q 005045 387 STDNFSKENLIGTGSFGSVYKGTL-GDGTIVAIKVLKLQQQGALKSFIDECNALKST-RHRNILRVITACSSVDLEGNDF 464 (717)
Q Consensus 387 ~~~~y~~~~~ig~g~~g~v~~~~~-~~~~~vavK~~~~~~~~~~~~~~~e~~~l~~l-~h~ni~~~~~~~~~~~~~~~~~ 464 (717)
..++|++.+.||+|+||.||+|++ .+++.||+|++..... ...+.+|+++++++ +||||+++++++. ..+.
T Consensus 7 ~~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~--~~~~~~E~~~l~~l~~h~~i~~~~~~~~-----~~~~ 79 (330)
T 2izr_A 7 VGPNFRVGKKIGCGNFGELRLGKNLYTNEYVAIKLEPMKSR--APQLHLEYRFYKQLGSGDGIPQVYYFGP-----CGKY 79 (330)
T ss_dssp ETTTEEEEEECCC-CTTSEEEEEETTTTEEEEEEEEETTCS--SCCHHHHHHHHHHHCSCTTSCCEEEEEE-----ETTE
T ss_pred EcCCeEEEEEeeccCCceEEEEEECCCCcEEEEEEeccccc--hHHHHHHHHHHHHhhCCCCCCEEEEEEe-----cCCc
Confidence 457899999999999999999996 4899999998864432 34678899999999 9999999999854 3458
Q ss_pred EEEEEecCCCCChhhhccCCCCCcccccccCHHHHHHHHHHHHHHHHHHHhcCCCCeeecCCCCCCEEeCCCCc-----e
Q 005045 465 KALVFEFMSNGNLDQWLHPSPAEHYQFKKLSVIQRLNIAIDVASALDYLHHHCDTPIAHCDLKPSNVLLDKDMT-----A 539 (717)
Q Consensus 465 ~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~dlkp~NIll~~~~~-----~ 539 (717)
.++||||+ +++|.+++.... ..+++..+..++.||+.||+|||+. +|+||||||+||+++.++. +
T Consensus 80 ~~lv~e~~-~~~L~~~~~~~~------~~~~~~~~~~i~~qi~~~l~~LH~~---~iiHrDlkp~Nill~~~~~~~~~~~ 149 (330)
T 2izr_A 80 NAMVLELL-GPSLEDLFDLCD------RTFSLKTVLMIAIQLISRMEYVHSK---NLIYRDVKPENFLIGRPGNKTQQVI 149 (330)
T ss_dssp EEEEEECC-CCBHHHHHHHTT------TCCCHHHHHHHHHHHHHHHHHHHHT---TEECCCCCGGGEEECCGGGTCTTSE
T ss_pred cEEEEEeC-CCCHHHHHHHcC------CCCCHHHHHHHHHHHHHHHHHHHhC---CeeccCCCHHHeeeccCCCCCCceE
Confidence 99999999 899999987532 5689999999999999999999998 9999999999999998887 9
Q ss_pred EEeeeccchhcccccCCCCCCcceeecccccccccCCCccCC-CCCcccchhhHHHHHHHHHhCCCCCCCCCCCchhhhH
Q 005045 540 HVGDFGLAKFLFEISDNPSKNQTVSIGLKGSIGYIPPEHMNG-QVSILGDIYSYGILLLEMFTGKRPTGDMFKDDFSIHM 618 (717)
Q Consensus 540 kl~Dfg~~~~~~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~-~~~~~sDvwslG~vl~elltg~~p~~~~~~~~~~~~~ 618 (717)
||+|||.+.....................||+.|+|||++.+ .++.++|||||||++|||++|..||...........
T Consensus 150 kl~DFg~a~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Di~slG~il~ell~g~~Pf~~~~~~~~~~~- 228 (330)
T 2izr_A 150 HIIDFALAKEYIDPETKKHIPYREHKSLTGTARYMSINTHLGKEQSRRDDLEALGHMFMYFLRGSLPWQGLKADTLKER- 228 (330)
T ss_dssp EECCCTTCEESBCTTTCCBCCCCCCCCCCSCTTTCCHHHHTTCCCCHHHHHHHHHHHHHHHHHSSCTTTTCCCSSHHHH-
T ss_pred EEEEcccceeeecCCCCccccccccCCcCCCccccChHHHcCCCCCchhHHHHHHHHHHHHhcCCCCccccccccHHHH-
Confidence 999999998763332222222222345679999999999765 489999999999999999999999976533221100
Q ss_pred HHHhcCChhhhhhcCCCCCCCCCCcHHHHHHHHHHHHHHhhhhhhhcchhhhHHHHHHHHHHhhccCCCCcCCCCCHHHH
Q 005045 619 FVSMALPDHVMDILDPSMPLDEENDEEQIEEVIEEKEMMIHIDLEVNTKNKLEECFVSVLRIGLMCSTTSPRERIAMNVV 698 (717)
Q Consensus 619 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~cl~~~p~~Rps~~ei 698 (717)
...+.. ....... ......++ .+.+++.+||+.+|.+||++.+|
T Consensus 229 ----------------------------~~~i~~-~~~~~~~------~~~~~~~p-~~~~li~~~l~~~p~~RP~~~~l 272 (330)
T 2izr_A 229 ----------------------------YQKIGD-TKRATPI------EVLCENFP-EMATYLRYVRRLDFFEKPDYDYL 272 (330)
T ss_dssp ----------------------------HHHHHH-HHHHSCH------HHHTTTCH-HHHHHHHHHHHCCTTCCCCHHHH
T ss_pred ----------------------------HHHHHh-hhccCCH------HHHhccCh-HHHHHHHHHHhCCCCCCCCHHHH
Confidence 000000 0000000 00111234 78999999999999999999999
Q ss_pred HHHHHHHHHHH
Q 005045 699 VNNLKTIRNCF 709 (717)
Q Consensus 699 l~~l~~i~~~~ 709 (717)
.+.|+.+.+..
T Consensus 273 ~~~l~~~~~~~ 283 (330)
T 2izr_A 273 RKLFTDLFDRK 283 (330)
T ss_dssp HHHHHHHHHHT
T ss_pred HHHHHHHHHHc
Confidence 99999887654
No 69
>4eqm_A Protein kinase; transferase; HET: ANP; 3.00A {Staphylococcus aureus subsp}
Probab=100.00 E-value=7e-40 Score=336.73 Aligned_cols=262 Identities=25% Similarity=0.396 Sum_probs=203.1
Q ss_pred cccccccccccCcccccceEEEEeC-CCchhhhHHhHhh---hhhHHHHHHHHHHHHhcCCCCceeEEEEeeccccCCCC
Q 005045 387 STDNFSKENLIGTGSFGSVYKGTLG-DGTIVAIKVLKLQ---QQGALKSFIDECNALKSTRHRNILRVITACSSVDLEGN 462 (717)
Q Consensus 387 ~~~~y~~~~~ig~g~~g~v~~~~~~-~~~~vavK~~~~~---~~~~~~~~~~e~~~l~~l~h~ni~~~~~~~~~~~~~~~ 462 (717)
..++|++.+.||+|+||.||+|.+. +++.||+|.+... .....+.+.+|+.++++++||||+++++++ ...
T Consensus 9 ~~~~y~i~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~~e~~~l~~l~hp~iv~~~~~~-----~~~ 83 (294)
T 4eqm_A 9 INERYKIVDKLGGGGMSTVYLAEDTILNIKVAIKAIFIPPREKEETLKRFEREVHNSSQLSHQNIVSMIDVD-----EED 83 (294)
T ss_dssp EETTEEEEEEEEEETTEEEEEEEETTTCSEEEEEEEECCSSCCHHHHHHHHHHHHHHTTCCBTTBCCEEEEE-----ECS
T ss_pred hhccEEEEEEEccCCCEEEEEEEECCCCCeEEEEEeccCccccHHHHHHHHHHHHHHhcCCCCCCceEEEee-----eeC
Confidence 3678999999999999999999965 7899999987532 234567889999999999999999999995 445
Q ss_pred ceEEEEEecCCCCChhhhccCCCCCcccccccCHHHHHHHHHHHHHHHHHHHhcCCCCeeecCCCCCCEEeCCCCceEEe
Q 005045 463 DFKALVFEFMSNGNLDQWLHPSPAEHYQFKKLSVIQRLNIAIDVASALDYLHHHCDTPIAHCDLKPSNVLLDKDMTAHVG 542 (717)
Q Consensus 463 ~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~dlkp~NIll~~~~~~kl~ 542 (717)
+..++||||+++++|.+++... ..+++..+..++.|++.||+|||+. +|+||||||+||+++.++.+||+
T Consensus 84 ~~~~lv~e~~~g~~L~~~l~~~-------~~~~~~~~~~~~~qi~~~l~~lH~~---~i~H~Dlkp~Nil~~~~~~~kl~ 153 (294)
T 4eqm_A 84 DCYYLVMEYIEGPTLSEYIESH-------GPLSVDTAINFTNQILDGIKHAHDM---RIVHRDIKPQNILIDSNKTLKIF 153 (294)
T ss_dssp SEEEEEEECCCSCBHHHHHHHH-------CSCCHHHHHHHHHHHHHHHHHHHHT---TCCCCCCCGGGEEECTTSCEEEC
T ss_pred CeEEEEEeCCCCCCHHHHHHhc-------CCCCHHHHHHHHHHHHHHHHHHHHC---CcccCCCCHHHEEECCCCCEEEE
Confidence 6899999999999999999744 5689999999999999999999998 99999999999999999999999
Q ss_pred eeccchhcccccCCCCCCcceeecccccccccCCCccCC-CCCcccchhhHHHHHHHHHhCCCCCCCCCCCchhhhHHHH
Q 005045 543 DFGLAKFLFEISDNPSKNQTVSIGLKGSIGYIPPEHMNG-QVSILGDIYSYGILLLEMFTGKRPTGDMFKDDFSIHMFVS 621 (717)
Q Consensus 543 Dfg~~~~~~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~-~~~~~sDvwslG~vl~elltg~~p~~~~~~~~~~~~~~~~ 621 (717)
|||.+...... .........||+.|+|||++.+ .++.++|||||||++|+|++|..||.......... ....
T Consensus 154 Dfg~~~~~~~~------~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Di~slG~~l~~ll~g~~pf~~~~~~~~~~-~~~~ 226 (294)
T 4eqm_A 154 DFGIAKALSET------SLTQTNHVLGTVQYFSPEQAKGEATDECTDIYSIGIVLYEMLVGEPPFNGETAVSIAI-KHIQ 226 (294)
T ss_dssp CCSSSTTC-------------------CCSSCCHHHHHTCCCCTTHHHHHHHHHHHHHHHSSCSSCSSCHHHHHH-HHHS
T ss_pred eCCCccccccc------cccccCccccCccccCHhHhcCCCCCchHhHHHHHHHHHHHHhCCCCCCCCChHHHHH-HHhh
Confidence 99999865211 1112234568999999999655 47899999999999999999999997542211100 0000
Q ss_pred hcCChhhhhhcCCCCCCCCCCcHHHHHHHHHHHHHHhhhhhhhcchhhhHHHHHHHHHHhhccCCCCcCCCC-CHHHHHH
Q 005045 622 MALPDHVMDILDPSMPLDEENDEEQIEEVIEEKEMMIHIDLEVNTKNKLEECFVSVLRIGLMCSTTSPRERI-AMNVVVN 700 (717)
Q Consensus 622 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~cl~~~p~~Rp-s~~eil~ 700 (717)
...+.. .. +...+++..+.+++.+|++.+|++|| +++++.+
T Consensus 227 ~~~~~~-~~-------------------------------------~~~~~~~~~l~~li~~~l~~dp~~R~~~~~~l~~ 268 (294)
T 4eqm_A 227 DSVPNV-TT-------------------------------------DVRKDIPQSLSNVILRATEKDKANRYKTIQEMKD 268 (294)
T ss_dssp SCCCCH-HH-------------------------------------HSCTTSCHHHHHHHHHHSCSSGGGSCSSHHHHHH
T ss_pred ccCCCc-ch-------------------------------------hcccCCCHHHHHHHHHHhcCCHhHccccHHHHHH
Confidence 000000 00 01122356788999999999999998 9999999
Q ss_pred HHHHHHHH
Q 005045 701 NLKTIRNC 708 (717)
Q Consensus 701 ~l~~i~~~ 708 (717)
.|+.+..+
T Consensus 269 ~l~~~~~~ 276 (294)
T 4eqm_A 269 DLSSVLHE 276 (294)
T ss_dssp HHHTSSSS
T ss_pred HHHHHHhh
Confidence 99877543
No 70
>3tki_A Serine/threonine-protein kinase CHK1; cell checkpoint, transferase-transferase inhib complex; HET: S25; 1.60A {Homo sapiens} PDB: 2qhm_A* 2r0u_A* 3tkh_A* 2qhn_A* 2hy0_A* 2hog_A* 2hxq_A* 2hxl_A* 3f9n_A*
Probab=100.00 E-value=3.8e-40 Score=343.12 Aligned_cols=254 Identities=20% Similarity=0.306 Sum_probs=199.8
Q ss_pred cccccccccccCcccccceEEEEeC-CCchhhhHHhHhhh-hhHHHHHHHHHHHHhcCCCCceeEEEEeeccccCCCCce
Q 005045 387 STDNFSKENLIGTGSFGSVYKGTLG-DGTIVAIKVLKLQQ-QGALKSFIDECNALKSTRHRNILRVITACSSVDLEGNDF 464 (717)
Q Consensus 387 ~~~~y~~~~~ig~g~~g~v~~~~~~-~~~~vavK~~~~~~-~~~~~~~~~e~~~l~~l~h~ni~~~~~~~~~~~~~~~~~ 464 (717)
..++|++.+.||+|+||.||+|.+. +++.||+|++.... ....+.+.+|+.+++.++||||+++++++. +.+.
T Consensus 5 ~~~~y~i~~~lG~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~hpnIv~~~~~~~-----~~~~ 79 (323)
T 3tki_A 5 FVEDWDLVQTLGEGAYGEVQLAVNRVTEEAVAVKIVDMKRAVDCPENIKKEICINKMLNHENVVKFYGHRR-----EGNI 79 (323)
T ss_dssp TTTCEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEECC-------CHHHHHHHHHHCCCTTBCCEEEEEE-----CSSE
T ss_pred HhhhceeeeEEecCCCEEEEEEEECCCCcEEEEEEEEcccccchHHHHHHHHHHHHhCCCCCCCeEEEEEe-----cCCe
Confidence 3578999999999999999999966 89999999986432 223466889999999999999999999954 4568
Q ss_pred EEEEEecCCCCChhhhccCCCCCcccccccCHHHHHHHHHHHHHHHHHHHhcCCCCeeecCCCCCCEEeCCCCceEEeee
Q 005045 465 KALVFEFMSNGNLDQWLHPSPAEHYQFKKLSVIQRLNIAIDVASALDYLHHHCDTPIAHCDLKPSNVLLDKDMTAHVGDF 544 (717)
Q Consensus 465 ~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~dlkp~NIll~~~~~~kl~Df 544 (717)
.++||||+++++|.+++... ..+++..+..++.||+.||+|||+. +|+||||||+||+++.++.+||+||
T Consensus 80 ~~lv~e~~~~~~L~~~l~~~-------~~~~~~~~~~i~~qi~~aL~~LH~~---givH~Dlkp~NIll~~~~~~kl~Df 149 (323)
T 3tki_A 80 QYLFLEYCSGGELFDRIEPD-------IGMPEPDAQRFFHQLMAGVVYLHGI---GITHRDIKPENLLLDERDNLKISDF 149 (323)
T ss_dssp EEEEEECCTTEEGGGGSBTT-------TBCCHHHHHHHHHHHHHHHHHHHHT---TEECSCCSGGGEEECTTCCEEECCC
T ss_pred EEEEEEcCCCCcHHHHHhhc-------CCCCHHHHHHHHHHHHHHHHHHHHC---CccccccchHHEEEeCCCCEEEEEe
Confidence 99999999999999999755 5689999999999999999999997 9999999999999999999999999
Q ss_pred ccchhcccccCCCCCCcceeecccccccccCCCccCCC--CCcccchhhHHHHHHHHHhCCCCCCCCCCCchhhhHHHHh
Q 005045 545 GLAKFLFEISDNPSKNQTVSIGLKGSIGYIPPEHMNGQ--VSILGDIYSYGILLLEMFTGKRPTGDMFKDDFSIHMFVSM 622 (717)
Q Consensus 545 g~~~~~~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~--~~~~sDvwslG~vl~elltg~~p~~~~~~~~~~~~~~~~~ 622 (717)
|.+....... .........||+.|+|||++.+. .+.++|||||||++|+|++|..||............+...
T Consensus 150 g~a~~~~~~~-----~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~DiwslG~il~~ll~g~~pf~~~~~~~~~~~~~~~~ 224 (323)
T 3tki_A 150 GLATVFRYNN-----RERLLNKMCGTLPYVAPELLKRREFHAEPVDVWSCGIVLTAMLAGELPWDQPSDSCQEYSDWKEK 224 (323)
T ss_dssp TTCEECEETT-----EECCBCSCCSCGGGSCHHHHHCSSBCHHHHHHHHHHHHHHHHHHSSCSCSSSCTTSHHHHHHHTT
T ss_pred eccceeccCC-----cccccCCCccCcCccCcHHhccCCCCCCcccHHHHHHHHHHHHhCCCCCCCCchHHHHHHHHhcc
Confidence 9997652111 11112345689999999997553 3788999999999999999999997654433322222111
Q ss_pred cCChhhhhhcCCCCCCCCCCcHHHHHHHHHHHHHHhhhhhhhcchhhhHHHHHHHHHHhhccCCCCcCCCCCHHHHHHH
Q 005045 623 ALPDHVMDILDPSMPLDEENDEEQIEEVIEEKEMMIHIDLEVNTKNKLEECFVSVLRIGLMCSTTSPRERIAMNVVVNN 701 (717)
Q Consensus 623 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~cl~~~p~~Rps~~eil~~ 701 (717)
. .... ....++..+.+++.+||+.+|++|||+.|+++.
T Consensus 225 ~------------~~~~-----------------------------~~~~~~~~~~~li~~~L~~dP~~R~t~~eil~h 262 (323)
T 3tki_A 225 K------------TYLN-----------------------------PWKKIDSAPLALLHKILVENPSARITIPDIKKD 262 (323)
T ss_dssp C------------TTST-----------------------------TGGGSCHHHHHHHHHHSCSSTTTSCCHHHHTTC
T ss_pred c------------ccCC-----------------------------ccccCCHHHHHHHHHHccCChhhCcCHHHHhhC
Confidence 0 0000 011224567889999999999999999999763
No 71
>2qol_A Ephrin receptor; receptor tyrosine kinase, juxtamembrane segment, structural genomics, mutant, structural genomics consortium, SGC, ATP- binding; 1.07A {Homo sapiens} PDB: 2qok_A 2qoi_A 2qoo_A 2qof_A 2qod_A 2qo9_A* 2gsf_A 2qo7_A* 2qo2_A* 2qoq_A* 2qon_A* 3fxx_A* 3fy2_A 2qoc_A* 2qob_A* 3dzq_A* 2r2p_A 2hel_A 2rei_A 3dko_A* ...
Probab=100.00 E-value=3.9e-40 Score=349.72 Aligned_cols=262 Identities=27% Similarity=0.454 Sum_probs=196.7
Q ss_pred cccccccccccCcccccceEEEEeC----CCchhhhHHhHhh-hhhHHHHHHHHHHHHhcCCCCceeEEEEeeccccCCC
Q 005045 387 STDNFSKENLIGTGSFGSVYKGTLG----DGTIVAIKVLKLQ-QQGALKSFIDECNALKSTRHRNILRVITACSSVDLEG 461 (717)
Q Consensus 387 ~~~~y~~~~~ig~g~~g~v~~~~~~----~~~~vavK~~~~~-~~~~~~~~~~e~~~l~~l~h~ni~~~~~~~~~~~~~~ 461 (717)
..++|++.+.||+|+||.||+|+++ +++.||+|.+... .....+.+.+|++++++++||||+++++++. .
T Consensus 43 ~~~~~~~~~~lG~G~fg~Vy~~~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~~~~~~~-----~ 117 (373)
T 2qol_A 43 DATNISIDKVVGAGEFGEVCSGRLKLPSKKEISVAIKTLKVGYTEKQRRDFLGEASIMGQFDHPNIIRLEGVVT-----K 117 (373)
T ss_dssp CGGGCCCCEEEEECSSSEEEEC-CBCTTSCBCCEEEEECCTTCCHHHHHHHHHHHHHHTTCCCTTBCCEEEEEC-----S
T ss_pred CHhhceeeeEEeeCCCeEEEEEEEecCCCCceeEEEEEecCccCHHHHHHHHHHHHHHHhCCCCCCCeEEEEEe-----e
Confidence 4568999999999999999999864 5778999998754 3345678999999999999999999999953 4
Q ss_pred CceEEEEEecCCCCChhhhccCCCCCcccccccCHHHHHHHHHHHHHHHHHHHhcCCCCeeecCCCCCCEEeCCCCceEE
Q 005045 462 NDFKALVFEFMSNGNLDQWLHPSPAEHYQFKKLSVIQRLNIAIDVASALDYLHHHCDTPIAHCDLKPSNVLLDKDMTAHV 541 (717)
Q Consensus 462 ~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~dlkp~NIll~~~~~~kl 541 (717)
.+..++||||+++++|.+++.... ..+++..+..++.||+.||+|||+. +|+||||||+||+++.++.+||
T Consensus 118 ~~~~~lv~e~~~~~sL~~~l~~~~------~~~~~~~~~~i~~qi~~aL~~LH~~---~ivH~Dlkp~NIll~~~~~~kl 188 (373)
T 2qol_A 118 SKPVMIVTEYMENGSLDSFLRKHD------AQFTVIQLVGMLRGIASGMKYLSDM---GYVHRDLAARNILINSNLVCKV 188 (373)
T ss_dssp SSSCEEEEECCTTCBHHHHHHTTT------TCSCHHHHHHHHHHHHHHHHHHHHT---TCCCSCCCGGGEEECTTCCEEE
T ss_pred CCceEEEEeCCCCCcHHHHHHhCC------CCCCHHHHHHHHHHHHHHHHHHHHC---CeeCCCCCcceEEEcCCCCEEE
Confidence 458899999999999999997543 4689999999999999999999997 9999999999999999999999
Q ss_pred eeeccchhcccccCCCCCCcceeecccccccccCCCccC-CCCCcccchhhHHHHHHHHHh-CCCCCCCCCCCchhhhHH
Q 005045 542 GDFGLAKFLFEISDNPSKNQTVSIGLKGSIGYIPPEHMN-GQVSILGDIYSYGILLLEMFT-GKRPTGDMFKDDFSIHMF 619 (717)
Q Consensus 542 ~Dfg~~~~~~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~-~~~~~~sDvwslG~vl~ellt-g~~p~~~~~~~~~~~~~~ 619 (717)
+|||.+........ .........++..|+|||++. +.++.++|||||||++|||++ |..||....... ....
T Consensus 189 ~Dfg~a~~~~~~~~----~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Dv~SlG~il~ellt~g~~P~~~~~~~~--~~~~ 262 (373)
T 2qol_A 189 SDFGLGRVLEDDPE----AAYTTRGGKIPIRWTSPEAIAYRKFTSASDVWSYGIVLWEVMSYGERPYWEMSNQD--VIKA 262 (373)
T ss_dssp CCC--------------------------CTTSCHHHHHHCCCCHHHHHHHHHHHHHHHHTTC-CTTTTCCHHH--HHHH
T ss_pred CcCccccccccCCc----cceeccCCCcCCCccChhhhccCCcCchhcHHHHHHHHHHHHhCCCCCCCCCCHHH--HHHH
Confidence 99999987522111 111112233577899999965 468999999999999999998 999996542211 1111
Q ss_pred HHhcCChhhhhhcCCCCCCCCCCcHHHHHHHHHHHHHHhhhhhhhcchhhhHHHHHHHHHHhhccCCCCcCCCCCHHHHH
Q 005045 620 VSMALPDHVMDILDPSMPLDEENDEEQIEEVIEEKEMMIHIDLEVNTKNKLEECFVSVLRIGLMCSTTSPRERIAMNVVV 699 (717)
Q Consensus 620 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~cl~~~p~~Rps~~eil 699 (717)
.. .... .+.+.+++..+.+++.+||+.+|++|||+.||+
T Consensus 263 i~------------~~~~-----------------------------~~~~~~~~~~l~~li~~cl~~dp~~RPs~~~i~ 301 (373)
T 2qol_A 263 VD------------EGYR-----------------------------LPPPMDCPAALYQLMLDCWQKDRNNRPKFEQIV 301 (373)
T ss_dssp HH------------TTEE-----------------------------CCCCTTCBHHHHHHHHHHTCSSGGGSCCHHHHH
T ss_pred HH------------cCCC-----------------------------CCCCccccHHHHHHHHHHhCcChhhCcCHHHHH
Confidence 10 0000 001122356788999999999999999999999
Q ss_pred HHHHHHHHHH
Q 005045 700 NNLKTIRNCF 709 (717)
Q Consensus 700 ~~l~~i~~~~ 709 (717)
+.|+++...-
T Consensus 302 ~~L~~~~~~~ 311 (373)
T 2qol_A 302 SILDKLIRNP 311 (373)
T ss_dssp HHHHHHHHCG
T ss_pred HHHHHHHhCc
Confidence 9999997643
No 72
>3gen_A Tyrosine-protein kinase BTK; bruton'S tyrosine kinase, 4-amino-5-(4-phenoxyphenyl)-5H- pyrrolo[3, 2-D]pyrimidin-7-YL-cyclopentane, TEC-family; HET: B43; 1.60A {Homo sapiens} PDB: 3k54_A* 3pj2_A* 3piy_A* 3piz_A* 3pj1_A* 3pix_A* 3pj3_A* 3p08_A 3ocs_A* 3oct_A* 1k2p_A
Probab=100.00 E-value=6e-40 Score=335.67 Aligned_cols=265 Identities=25% Similarity=0.417 Sum_probs=208.9
Q ss_pred cccccccccccccccccCcccccceEEEEeCCCchhhhHHhHhhhhhHHHHHHHHHHHHhcCCCCceeEEEEeeccccCC
Q 005045 381 YSDISKSTDNFSKENLIGTGSFGSVYKGTLGDGTIVAIKVLKLQQQGALKSFIDECNALKSTRHRNILRVITACSSVDLE 460 (717)
Q Consensus 381 ~~~~~~~~~~y~~~~~ig~g~~g~v~~~~~~~~~~vavK~~~~~~~~~~~~~~~e~~~l~~l~h~ni~~~~~~~~~~~~~ 460 (717)
...+....++|++.+.||+|+||.||.|.+.+++.||+|++...... .+.+.+|++++++++||||+++++++ .
T Consensus 16 ~~~~~~~~~~y~~~~~lg~G~~g~V~~~~~~~~~~vavK~~~~~~~~-~~~~~~E~~~l~~l~h~~i~~~~~~~-----~ 89 (283)
T 3gen_A 16 YGSWEIDPKDLTFLKELGTGQFGVVKYGKWRGQYDVAIKMIKEGSMS-EDEFIEEAKVMMNLSHEKLVQLYGVC-----T 89 (283)
T ss_dssp CCTTBCCGGGEEEEEECC---CEEEEEEEETTTEEEEEEEECTTSBC-HHHHHHHHHHHHTCCCTTBCCEEEEE-----C
T ss_pred CCCccCCHHHHHhHhhcCCCCCceEEEEEEcCCCeEEEEEecCCCCC-HHHHHHHHHHHhcCCCCCEeeEEEEE-----e
Confidence 34556678899999999999999999999888889999998755332 36788999999999999999999995 4
Q ss_pred CCceEEEEEecCCCCChhhhccCCCCCcccccccCHHHHHHHHHHHHHHHHHHHhcCCCCeeecCCCCCCEEeCCCCceE
Q 005045 461 GNDFKALVFEFMSNGNLDQWLHPSPAEHYQFKKLSVIQRLNIAIDVASALDYLHHHCDTPIAHCDLKPSNVLLDKDMTAH 540 (717)
Q Consensus 461 ~~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~dlkp~NIll~~~~~~k 540 (717)
+.+..++||||+++++|.+++.... ..+++..+..++.|++.||+|||+. +|+||||||+||+++.++.+|
T Consensus 90 ~~~~~~lv~e~~~~~~L~~~l~~~~------~~~~~~~~~~i~~qi~~~l~~lH~~---~i~H~dikp~Nili~~~~~~k 160 (283)
T 3gen_A 90 KQRPIFIITEYMANGCLLNYLREMR------HRFQTQQLLEMCKDVCEAMEYLESK---QFLHRDLAARNCLVNDQGVVK 160 (283)
T ss_dssp SSSSEEEEECCCTTCBHHHHHHCGG------GCCCHHHHHHHHHHHHHHHHHHHHT---TCCCSSCSGGGEEECTTSCEE
T ss_pred cCCCeEEEEeccCCCcHHHHHHHhc------cCCCHHHHHHHHHHHHHHHHHHHHC---CccCCCCccceEEEcCCCCEE
Confidence 4568999999999999999997532 5689999999999999999999998 999999999999999999999
Q ss_pred EeeeccchhcccccCCCCCCcceeecccccccccCCCccC-CCCCcccchhhHHHHHHHHHh-CCCCCCCCCCCchhhhH
Q 005045 541 VGDFGLAKFLFEISDNPSKNQTVSIGLKGSIGYIPPEHMN-GQVSILGDIYSYGILLLEMFT-GKRPTGDMFKDDFSIHM 618 (717)
Q Consensus 541 l~Dfg~~~~~~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~-~~~~~~sDvwslG~vl~ellt-g~~p~~~~~~~~~~~~~ 618 (717)
|+|||.+....... ........+++.|+|||++. +.++.++|||||||++|+|++ |..||....... ...
T Consensus 161 l~Dfg~~~~~~~~~------~~~~~~~~~~~~y~aPE~~~~~~~~~~~Dv~slG~~l~~l~t~g~~p~~~~~~~~--~~~ 232 (283)
T 3gen_A 161 VSDFGLSRYVLDDE------YTSSVGSKFPVRWSPPEVLMYSKFSSKSDIWAFGVLMWEIYSLGKMPYERFTNSE--TAE 232 (283)
T ss_dssp ECSTTGGGGBCCHH------HHSTTSTTSCGGGCCHHHHHHCCCSHHHHHHHHHHHHHHHHTTTCCTTTTSCHHH--HHH
T ss_pred Eccccccccccccc------cccccCCccCcccCCHHHhccCCCCchhhHHHHHHHHHHHHhCCCCCccccChhH--HHH
Confidence 99999998652211 11112334677899999965 568999999999999999998 999997643221 111
Q ss_pred HHHhcCChhhhhhcCCCCCCCCCCcHHHHHHHHHHHHHHhhhhhhhcchhhhHHHHHHHHHHhhccCCCCcCCCCCHHHH
Q 005045 619 FVSMALPDHVMDILDPSMPLDEENDEEQIEEVIEEKEMMIHIDLEVNTKNKLEECFVSVLRIGLMCSTTSPRERIAMNVV 698 (717)
Q Consensus 619 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~cl~~~p~~Rps~~ei 698 (717)
.. ........+ ..++..+.+++.+||+.+|++|||++|+
T Consensus 233 ~~--------~~~~~~~~~---------------------------------~~~~~~l~~li~~~l~~~p~~Rps~~~l 271 (283)
T 3gen_A 233 HI--------AQGLRLYRP---------------------------------HLASEKVYTIMYSCWHEKADERPTFKIL 271 (283)
T ss_dssp HH--------HTTCCCCCC---------------------------------TTCCHHHHHHHHHTTCSSGGGSCCHHHH
T ss_pred HH--------hcccCCCCC---------------------------------CcCCHHHHHHHHHHccCChhHCcCHHHH
Confidence 11 111111110 1114567889999999999999999999
Q ss_pred HHHHHHHHHHH
Q 005045 699 VNNLKTIRNCF 709 (717)
Q Consensus 699 l~~l~~i~~~~ 709 (717)
++.|+.+..+.
T Consensus 272 l~~L~~~~~~e 282 (283)
T 3gen_A 272 LSNILDVMDEE 282 (283)
T ss_dssp HHHHHHHHHHC
T ss_pred HHHHHHHhhcc
Confidence 99999998653
No 73
>3gni_B Strad alpha; kinase fold, pseudokinase, alpha helical repeat protein, ADA protein, ATP-binding, cell cycle, kinase, nucleotide-bindin nucleus; HET: ATP CIT; 2.35A {Homo sapiens} PDB: 2wtk_B*
Probab=100.00 E-value=6.3e-40 Score=351.35 Aligned_cols=307 Identities=16% Similarity=0.194 Sum_probs=208.9
Q ss_pred CcccccccccccccccccCcc--cccceEEEEeC-CCchhhhHHhHhhh--hhHHHHHHHHHHHHhcCCCCceeEEEEee
Q 005045 380 SYSDISKSTDNFSKENLIGTG--SFGSVYKGTLG-DGTIVAIKVLKLQQ--QGALKSFIDECNALKSTRHRNILRVITAC 454 (717)
Q Consensus 380 s~~~~~~~~~~y~~~~~ig~g--~~g~v~~~~~~-~~~~vavK~~~~~~--~~~~~~~~~e~~~l~~l~h~ni~~~~~~~ 454 (717)
+.+.+....++|++.++||+| +||.||+|+++ +++.||+|++.... ....+.+.+|++++++++||||+++++++
T Consensus 16 ~~s~~~~~~~~y~~~~~lG~G~~~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~~~~~~ 95 (389)
T 3gni_B 16 GMSSFLPEGGCYELLTVIGKGFEDLMTVNLARYKPTGEYVTVRRINLEACSNEMVTFLQGELHVSKLFNHPNIVPYRATF 95 (389)
T ss_dssp --CCCCCCGGGEEEEEEEEEETTTTEEEEEEEETTTCCEEEEEEEEGGGSCHHHHHHHHHHHHHHHHCCCTTBCCEEEEE
T ss_pred hhhcccCCCCcEEEEecccCCcCCceEEEEEEEcCCCCEEEEEEecccccChHHHHHHHHHHHHHHhCCCCCCCcEeEEE
Confidence 345566778899999999999 99999999976 79999999987543 34567888999999999999999999995
Q ss_pred ccccCCCCceEEEEEecCCCCChhhhccCCCCCcccccccCHHHHHHHHHHHHHHHHHHHhcCCCCeeecCCCCCCEEeC
Q 005045 455 SSVDLEGNDFKALVFEFMSNGNLDQWLHPSPAEHYQFKKLSVIQRLNIAIDVASALDYLHHHCDTPIAHCDLKPSNVLLD 534 (717)
Q Consensus 455 ~~~~~~~~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~dlkp~NIll~ 534 (717)
. ..+..++||||+++++|.+++..... ..+++..+..++.||+.||+|||+. +|+||||||+||+++
T Consensus 96 ~-----~~~~~~lv~e~~~~~~L~~~l~~~~~-----~~~~~~~~~~~~~qi~~~l~~LH~~---~ivHrDlkp~NIll~ 162 (389)
T 3gni_B 96 I-----ADNELWVVTSFMAYGSAKDLICTHFM-----DGMNELAIAYILQGVLKALDYIHHM---GYVHRSVKASHILIS 162 (389)
T ss_dssp E-----ETTEEEEEEECCTTCBHHHHHHHTCT-----TCCCHHHHHHHHHHHHHHHHHHHHT---TEECCCCSGGGEEEC
T ss_pred E-----ECCEEEEEEEccCCCCHHHHHhhhcc-----cCCCHHHHHHHHHHHHHHHHHHHhC---CeecCCCCHHHEEEc
Confidence 4 44589999999999999999875421 5689999999999999999999998 999999999999999
Q ss_pred CCCceEEeeeccchhcccccCCCCCCcceeecccccccccCCCccCC---CCCcccchhhHHHHHHHHHhCCCCCCCCCC
Q 005045 535 KDMTAHVGDFGLAKFLFEISDNPSKNQTVSIGLKGSIGYIPPEHMNG---QVSILGDIYSYGILLLEMFTGKRPTGDMFK 611 (717)
Q Consensus 535 ~~~~~kl~Dfg~~~~~~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~---~~~~~sDvwslG~vl~elltg~~p~~~~~~ 611 (717)
.++.+||+|||.+.....................||+.|+|||++.+ .++.++|||||||++|+|++|..||.+...
T Consensus 163 ~~~~~kl~dfg~~~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~~DiwslG~il~el~~g~~pf~~~~~ 242 (389)
T 3gni_B 163 VDGKVYLSGLRSNLSMISHGQRQRVVHDFPKYSVKVLPWLSPEVLQQNLQGYDAKSDIYSVGITACELANGHVPFKDMPA 242 (389)
T ss_dssp TTCCEEECCGGGCEECEETTEECSCBCCCCTTCTTTGGGSCHHHHSTTSSCBCTHHHHHHHHHHHHHHHHSSCTTTTCCS
T ss_pred CCCCEEEcccccceeeccccccccccccccccccccccccCHHHHhccCCCCCcHhHHHHHHHHHHHHHHCCCCCCCCCH
Confidence 99999999999886543222111111222233468999999999765 489999999999999999999999977544
Q ss_pred CchhhhHHHHhcCChhhhhhcCCC--CCCCC--CCcHHHHHHHHHHHHHHhhhhhhhcchhhhHHHHHHHHHHhhccCCC
Q 005045 612 DDFSIHMFVSMALPDHVMDILDPS--MPLDE--ENDEEQIEEVIEEKEMMIHIDLEVNTKNKLEECFVSVLRIGLMCSTT 687 (717)
Q Consensus 612 ~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~cl~~ 687 (717)
..... .......+........+. ..... ........+..... .................++..+.+|+.+||++
T Consensus 243 ~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~s~~~~~li~~~L~~ 320 (389)
T 3gni_B 243 TQMLL-EKLNGTVPCLLDTSTIPAEELTMSPSRSVANSGLSDSLTTS-TPRPSNGDSPSHPYHRTFSPHFHHFVEQCLQR 320 (389)
T ss_dssp TTHHH-HC---------------------------------------------------------CCHHHHHHHHHHTCS
T ss_pred HHHHH-HHhcCCCCccccccccccccccccccccccccccccccccC-ccccccCCCCCCccccccCHHHHHHHHHHhhc
Confidence 33221 111111111100000000 00000 00000000000000 00000011111123344567789999999999
Q ss_pred CcCCCCCHHHHHHH
Q 005045 688 SPRERIAMNVVVNN 701 (717)
Q Consensus 688 ~p~~Rps~~eil~~ 701 (717)
||++|||++|+++.
T Consensus 321 dP~~Rpta~ell~h 334 (389)
T 3gni_B 321 NPDARPSASTLLNH 334 (389)
T ss_dssp CTTTSCCHHHHTTS
T ss_pred CcccCCCHHHHhcC
Confidence 99999999999854
No 74
>1tki_A Titin; serine kinase, muscle, autoinhibition; 2.00A {Homo sapiens} SCOP: d.144.1.7
Probab=100.00 E-value=1.6e-39 Score=338.02 Aligned_cols=252 Identities=22% Similarity=0.306 Sum_probs=201.4
Q ss_pred cccccccccccCcccccceEEEEeC-CCchhhhHHhHhhhhhHHHHHHHHHHHHhcCCCCceeEEEEeeccccCCCCceE
Q 005045 387 STDNFSKENLIGTGSFGSVYKGTLG-DGTIVAIKVLKLQQQGALKSFIDECNALKSTRHRNILRVITACSSVDLEGNDFK 465 (717)
Q Consensus 387 ~~~~y~~~~~ig~g~~g~v~~~~~~-~~~~vavK~~~~~~~~~~~~~~~e~~~l~~l~h~ni~~~~~~~~~~~~~~~~~~ 465 (717)
..++|++.+.||+|+||.||+|.++ +++.||+|.+.... .....+.+|+++++.++||||+++++++. +.+..
T Consensus 3 ~~~~y~~~~~lG~G~~g~Vy~~~~~~~~~~~a~K~~~~~~-~~~~~~~~E~~~l~~l~hpnIv~~~~~~~-----~~~~~ 76 (321)
T 1tki_A 3 LYEKYMIAEDLGRGEFGIVHRCVETSSKKTYMAKFVKVKG-TDQVLVKKEISILNIARHRNILHLHESFE-----SMEEL 76 (321)
T ss_dssp CTTTEEEEEEEEECSSEEEEEEEETTTTEEEEEEEECCCT-HHHHHHHHHHHHHHHSCCTTBCCEEEEEE-----ETTEE
T ss_pred hhhceEeeeEEecCCCeEEEEEEECCCCcEEEEEEEecCc-ccHHHHHHHHHHHHhCCCCCCCeEeEEEe-----cCCEE
Confidence 4579999999999999999999965 78899999886443 23466889999999999999999999954 44589
Q ss_pred EEEEecCCCCChhhhccCCCCCcccccccCHHHHHHHHHHHHHHHHHHHhcCCCCeeecCCCCCCEEeCC--CCceEEee
Q 005045 466 ALVFEFMSNGNLDQWLHPSPAEHYQFKKLSVIQRLNIAIDVASALDYLHHHCDTPIAHCDLKPSNVLLDK--DMTAHVGD 543 (717)
Q Consensus 466 ~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~dlkp~NIll~~--~~~~kl~D 543 (717)
++||||+++++|.+++.... ..+++..+..++.||+.||+|||+. ||+||||||+||+++. ++.+||+|
T Consensus 77 ~lv~e~~~g~~L~~~l~~~~------~~~~~~~~~~i~~qi~~al~~lH~~---givH~Dlkp~NIl~~~~~~~~~kl~D 147 (321)
T 1tki_A 77 VMIFEFISGLDIFERINTSA------FELNEREIVSYVHQVCEALQFLHSH---NIGHFDIRPENIIYQTRRSSTIKIIE 147 (321)
T ss_dssp EEEECCCCCCBHHHHHTSSS------CCCCHHHHHHHHHHHHHHHHHHHHT---TEECCCCCGGGEEESSSSCCCEEECC
T ss_pred EEEEEeCCCCCHHHHHHhcC------CCCCHHHHHHHHHHHHHHHHHHHHC---CCCcCCCCHHHEEEccCCCCCEEEEE
Confidence 99999999999999997542 4689999999999999999999998 9999999999999987 78999999
Q ss_pred eccchhcccccCCCCCCcceeecccccccccCCCccCCC-CCcccchhhHHHHHHHHHhCCCCCCCCCCCchhhhHHHHh
Q 005045 544 FGLAKFLFEISDNPSKNQTVSIGLKGSIGYIPPEHMNGQ-VSILGDIYSYGILLLEMFTGKRPTGDMFKDDFSIHMFVSM 622 (717)
Q Consensus 544 fg~~~~~~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~-~~~~sDvwslG~vl~elltg~~p~~~~~~~~~~~~~~~~~ 622 (717)
||.+.... .........|++.|+|||++.+. ++.++|||||||++|+|++|..||...... .....
T Consensus 148 fg~a~~~~--------~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~~ll~g~~pf~~~~~~--~~~~~--- 214 (321)
T 1tki_A 148 FGQARQLK--------PGDNFRLLFTAPEYYAPEVHQHDVVSTATDMWSLGTLVYVLLSGINPFLAETNQ--QIIEN--- 214 (321)
T ss_dssp CTTCEECC--------TTCEEEEEESCGGGSCHHHHTTCEECHHHHHHHHHHHHHHHHHSSCTTCCSSHH--HHHHH---
T ss_pred CCCCeECC--------CCCccccccCChhhcCcHHhcCCCCCchhhHHHHHHHHHHHHhCCCCCcCCCHH--HHHHH---
Confidence 99998651 11223446689999999997665 799999999999999999999999653221 11111
Q ss_pred cCChhhhhhcCCCCCCCCCCcHHHHHHHHHHHHHHhhhhhhhcchhhhHHHHHHHHHHhhccCCCCcCCCCCHHHHHHH
Q 005045 623 ALPDHVMDILDPSMPLDEENDEEQIEEVIEEKEMMIHIDLEVNTKNKLEECFVSVLRIGLMCSTTSPRERIAMNVVVNN 701 (717)
Q Consensus 623 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~cl~~~p~~Rps~~eil~~ 701 (717)
+......... ....+++..+.+++.+||+.+|++|||+.|+++.
T Consensus 215 --------i~~~~~~~~~---------------------------~~~~~~s~~~~~li~~~L~~dp~~Rpt~~e~l~h 258 (321)
T 1tki_A 215 --------IMNAEYTFDE---------------------------EAFKEISIEAMDFVDRLLVKERKSRMTASEALQH 258 (321)
T ss_dssp --------HHHTCCCCCH---------------------------HHHTTSCHHHHHHHHTTSCSSGGGSCCHHHHHHS
T ss_pred --------HHcCCCCCCh---------------------------hhhccCCHHHHHHHHHHcCCChhHCcCHHHHhcC
Confidence 1111110000 0111235668899999999999999999999874
No 75
>2yab_A Death-associated protein kinase 2; apoptosis, transferase; HET: AMP; 1.90A {Mus musculus} PDB: 2yaa_A* 2ya9_A*
Probab=100.00 E-value=1.6e-39 Score=342.42 Aligned_cols=252 Identities=23% Similarity=0.321 Sum_probs=200.8
Q ss_pred ccccccccccccCcccccceEEEEeC-CCchhhhHHhHhhhhh------HHHHHHHHHHHHhcCCCCceeEEEEeecccc
Q 005045 386 KSTDNFSKENLIGTGSFGSVYKGTLG-DGTIVAIKVLKLQQQG------ALKSFIDECNALKSTRHRNILRVITACSSVD 458 (717)
Q Consensus 386 ~~~~~y~~~~~ig~g~~g~v~~~~~~-~~~~vavK~~~~~~~~------~~~~~~~e~~~l~~l~h~ni~~~~~~~~~~~ 458 (717)
...++|++.+.||+|+||.||+|..+ +|+.||+|++...... ..+.+.+|+.++++++||||+++++++
T Consensus 9 ~~~~~y~~~~~LG~G~fg~V~~~~~~~~~~~~avK~i~~~~~~~~~~~~~~~~~~~E~~il~~l~hpnIv~l~~~~---- 84 (361)
T 2yab_A 9 KVEDFYDIGEELGSGQFAIVKKCREKSTGLEYAAKFIKKRQSRASRRGVCREEIEREVSILRQVLHPNIITLHDVY---- 84 (361)
T ss_dssp CGGGTEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEEBCSSTTCSSSBCHHHHHHHHHHHTTCCCTTBCCEEEEE----
T ss_pred ChhhceEEeeEEeeCcCEEEEEEEECCCCCEEEEEEEEccccccccchhHHHHHHHHHHHHHhCCCcCCCcEEEEE----
Confidence 34678999999999999999999965 7999999998754321 246788999999999999999999995
Q ss_pred CCCCceEEEEEecCCCCChhhhccCCCCCcccccccCHHHHHHHHHHHHHHHHHHHhcCCCCeeecCCCCCCEEeCCCC-
Q 005045 459 LEGNDFKALVFEFMSNGNLDQWLHPSPAEHYQFKKLSVIQRLNIAIDVASALDYLHHHCDTPIAHCDLKPSNVLLDKDM- 537 (717)
Q Consensus 459 ~~~~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~dlkp~NIll~~~~- 537 (717)
.+....++||||++|++|.+++... ..+++..+..++.||+.||+|||+. ||+||||||+||+++.++
T Consensus 85 -~~~~~~~lv~e~~~gg~L~~~l~~~-------~~l~~~~~~~i~~qi~~aL~~LH~~---givHrDlkp~NIll~~~~~ 153 (361)
T 2yab_A 85 -ENRTDVVLILELVSGGELFDFLAQK-------ESLSEEEATSFIKQILDGVNYLHTK---KIAHFDLKPENIMLLDKNI 153 (361)
T ss_dssp -ECSSEEEEEEECCCSCBHHHHHTTC-------SCCBHHHHHHHHHHHHHHHHHHHHT---TEECCCCSGGGEEESCTTS
T ss_pred -EeCCEEEEEEEcCCCCcHHHHHHhc-------CCCCHHHHHHHHHHHHHHHHHHHHC---CcccCCCCHHHEEEeCCCC
Confidence 4456899999999999999999754 5689999999999999999999998 999999999999998776
Q ss_pred ---ceEEeeeccchhcccccCCCCCCcceeecccccccccCCCccCC-CCCcccchhhHHHHHHHHHhCCCCCCCCCCCc
Q 005045 538 ---TAHVGDFGLAKFLFEISDNPSKNQTVSIGLKGSIGYIPPEHMNG-QVSILGDIYSYGILLLEMFTGKRPTGDMFKDD 613 (717)
Q Consensus 538 ---~~kl~Dfg~~~~~~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~-~~~~~sDvwslG~vl~elltg~~p~~~~~~~~ 613 (717)
.+||+|||++..... ........||+.|+|||++.+ .++.++|||||||++|+|++|..||......
T Consensus 154 ~~~~vkl~DFG~a~~~~~--------~~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslGvil~~ll~g~~Pf~~~~~~- 224 (361)
T 2yab_A 154 PIPHIKLIDFGLAHEIED--------GVEFKNIFGTPEFVAPEIVNYEPLGLEADMWSIGVITYILLSGASPFLGDTKQ- 224 (361)
T ss_dssp SSCCEEECCCSSCEECCT--------TCCCCCCCSCGGGCCHHHHTTCCCCTHHHHHHHHHHHHHHHHSCCSSCCSSHH-
T ss_pred CccCEEEEecCCceEcCC--------CCccccCCCCccEECchHHcCCCCCccccHHHHHHHHHHHHhCCCCCCCCCHH-
Confidence 799999999986521 111234569999999999765 5899999999999999999999999654211
Q ss_pred hhhhHHHHhcCChhhhhhcCCCCCCCCCCcHHHHHHHHHHHHHHhhhhhhhcchhhhHHHHHHHHHHhhccCCCCcCCCC
Q 005045 614 FSIHMFVSMALPDHVMDILDPSMPLDEENDEEQIEEVIEEKEMMIHIDLEVNTKNKLEECFVSVLRIGLMCSTTSPRERI 693 (717)
Q Consensus 614 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~cl~~~p~~Rp 693 (717)
... ..+......... +.....+..+.+++.+||+.||++||
T Consensus 225 -~~~-----------~~i~~~~~~~~~---------------------------~~~~~~s~~~~~li~~~L~~dP~~R~ 265 (361)
T 2yab_A 225 -ETL-----------ANITAVSYDFDE---------------------------EFFSQTSELAKDFIRKLLVKETRKRL 265 (361)
T ss_dssp -HHH-----------HHHHTTCCCCCH---------------------------HHHTTSCHHHHHHHHHHSCSSTTTSC
T ss_pred -HHH-----------HHHHhcCCCCCc---------------------------hhccCCCHHHHHHHHHHCCCChhHCc
Confidence 111 111111111000 00112245678999999999999999
Q ss_pred CHHHHHH
Q 005045 694 AMNVVVN 700 (717)
Q Consensus 694 s~~eil~ 700 (717)
|+.|+++
T Consensus 266 t~~e~l~ 272 (361)
T 2yab_A 266 TIQEALR 272 (361)
T ss_dssp CHHHHHT
T ss_pred CHHHHhc
Confidence 9999985
No 76
>3brb_A Proto-oncogene tyrosine-protein kinase MER; ATP-binding, disease mutation, glycoprotein, nucleot binding, phosphorylation, receptor; HET: ADP; 1.90A {Homo sapiens} PDB: 3bpr_A* 2p0c_A*
Probab=100.00 E-value=1.1e-39 Score=338.72 Aligned_cols=295 Identities=24% Similarity=0.413 Sum_probs=206.4
Q ss_pred ccCCCCCCcccccCCCCcccccccccccccccccCcccccceEEEEeC----CCchhhhHHhHhh--hhhHHHHHHHHHH
Q 005045 364 NDLNGTIPKEVRQSGMSYSDISKSTDNFSKENLIGTGSFGSVYKGTLG----DGTIVAIKVLKLQ--QQGALKSFIDECN 437 (717)
Q Consensus 364 N~l~~~~p~~~~~~~~s~~~~~~~~~~y~~~~~ig~g~~g~v~~~~~~----~~~~vavK~~~~~--~~~~~~~~~~e~~ 437 (717)
++.++............+.++....++|.+.+.||+|+||.||+|... +++.||+|.+... .....+.+.+|++
T Consensus 9 ~~~~~~~~~~~eel~~~~~~~~~~~~~y~~~~~lg~G~~g~V~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~e~~ 88 (313)
T 3brb_A 9 HHSSGLVPRGSEELQNKLEDVVIDRNLLILGKILGEGEFGSVMEGNLKQEDGTSLKVAVKTMKLDNSSQREIEEFLSEAA 88 (313)
T ss_dssp ---------------CCTTTTBCCGGGEEEEEEEEC-CCCCEEEEEEECTTSCEEEEEEEEC---CCCHHHHHHHHHHHH
T ss_pred cccCCCCcCchHhhhhhHHhcccCHHHeeeccceeecCCeEEEEEEEeccCCceeEEEEEEEeccccchhHHHHHHHHHH
Confidence 444555555666667778888889999999999999999999999843 4557999998754 2344577899999
Q ss_pred HHhcCCCCceeEEEEeeccccCCCCceEEEEEecCCCCChhhhccCCCCCcccccccCHHHHHHHHHHHHHHHHHHHhcC
Q 005045 438 ALKSTRHRNILRVITACSSVDLEGNDFKALVFEFMSNGNLDQWLHPSPAEHYQFKKLSVIQRLNIAIDVASALDYLHHHC 517 (717)
Q Consensus 438 ~l~~l~h~ni~~~~~~~~~~~~~~~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~i~~~i~~~l~~LH~~~ 517 (717)
++++++||||+++++++...........++||||+++++|.+++...... .....+++..++.++.||+.||.|||+.
T Consensus 89 ~l~~l~h~~iv~~~~~~~~~~~~~~~~~~~v~e~~~~~~L~~~l~~~~~~-~~~~~~~~~~~~~i~~qi~~aL~~LH~~- 166 (313)
T 3brb_A 89 CMKDFSHPNVIRLLGVCIEMSSQGIPKPMVILPFMKYGDLHTYLLYSRLE-TGPKHIPLQTLLKFMVDIALGMEYLSNR- 166 (313)
T ss_dssp HHHTCCCTTBCCCCEEEEC-------CEEEEEECCTTCBHHHHHHHTTBT-TSCCCCCHHHHHHHHHHHHHHHHHHHTT-
T ss_pred HHhcCCCCCeeeeeEEEeeccccCCcccEEEEecccCCCHHHHHHHhhhh-cCCccCCHHHHHHHHHHHHHHHHHHHhC-
Confidence 99999999999999997654322233569999999999999998422110 0125689999999999999999999998
Q ss_pred CCCeeecCCCCCCEEeCCCCceEEeeeccchhcccccCCCCCCcceeecccccccccCCCccCC-CCCcccchhhHHHHH
Q 005045 518 DTPIAHCDLKPSNVLLDKDMTAHVGDFGLAKFLFEISDNPSKNQTVSIGLKGSIGYIPPEHMNG-QVSILGDIYSYGILL 596 (717)
Q Consensus 518 ~~~ivH~dlkp~NIll~~~~~~kl~Dfg~~~~~~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~-~~~~~sDvwslG~vl 596 (717)
+|+||||||+||+++.++.+||+|||.+....... .........+++.|+|||.+.+ .++.++|||||||++
T Consensus 167 --~ivH~dikp~NIli~~~~~~kl~Dfg~~~~~~~~~-----~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il 239 (313)
T 3brb_A 167 --NFLHRDLAARNCMLRDDMTVCVADFGLSKKIYSGD-----YYRQGRIAKMPVKWIAIESLADRVYTSKSDVWAFGVTM 239 (313)
T ss_dssp --TCCCCCCSGGGEEECTTSCEEECSCSCC---------------------CCGGGSCHHHHHSSCCCHHHHHHHHHHHH
T ss_pred --CcccCCCCcceEEEcCCCcEEEeecCcceeccccc-----ccCcccccCCCccccCchhhcCCCccchhhhHHHHHHH
Confidence 99999999999999999999999999998652211 1112233457788999999654 589999999999999
Q ss_pred HHHHh-CCCCCCCCCCCchhhhHHHHhcCChhhhhhcCCCCCCCCCCcHHHHHHHHHHHHHHhhhhhhhcchhhhHHHHH
Q 005045 597 LEMFT-GKRPTGDMFKDDFSIHMFVSMALPDHVMDILDPSMPLDEENDEEQIEEVIEEKEMMIHIDLEVNTKNKLEECFV 675 (717)
Q Consensus 597 ~ellt-g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 675 (717)
|+|++ |..||........ ..... ...... .+..++.
T Consensus 240 ~el~~~g~~p~~~~~~~~~--~~~~~-----------~~~~~~------------------------------~~~~~~~ 276 (313)
T 3brb_A 240 WEIATRGMTPYPGVQNHEM--YDYLL-----------HGHRLK------------------------------QPEDCLD 276 (313)
T ss_dssp HHHHTTSCCSSTTCCGGGH--HHHHH-----------TTCCCC------------------------------CBTTCCH
T ss_pred HHHHhcCCCCCccCCHHHH--HHHHH-----------cCCCCC------------------------------CCccccH
Confidence 99999 8899876432211 11110 000000 1112356
Q ss_pred HHHHHhhccCCCCcCCCCCHHHHHHHHHHHHHHHH
Q 005045 676 SVLRIGLMCSTTSPRERIAMNVVVNNLKTIRNCFL 710 (717)
Q Consensus 676 ~l~~li~~cl~~~p~~Rps~~eil~~l~~i~~~~~ 710 (717)
.+.+++.+||+.+|++|||+.|+++.|+++.+..+
T Consensus 277 ~l~~li~~~l~~dp~~Rps~~~l~~~L~~l~~~lp 311 (313)
T 3brb_A 277 ELYEIMYSCWRTDPLDRPTFSVLRLQLEKLLESLP 311 (313)
T ss_dssp HHHHHHHHTTCSSGGGSCCHHHHHHHHHHHHHHC-
T ss_pred HHHHHHHHHcCCChhhCcCHHHHHHHHHHHHHhcC
Confidence 68899999999999999999999999999987754
No 77
>4fr4_A YANK1, serine/threonine-protein kinase 32A; structural genomics, structural genomics consortium, SGC, TR; HET: STU; 2.29A {Homo sapiens}
Probab=100.00 E-value=2.8e-39 Score=342.43 Aligned_cols=250 Identities=22% Similarity=0.319 Sum_probs=200.1
Q ss_pred ccccccccccccCcccccceEEEEeC-CCchhhhHHhHhhh---hhHHHHHHHHHHHHhcCCCCceeEEEEeeccccCCC
Q 005045 386 KSTDNFSKENLIGTGSFGSVYKGTLG-DGTIVAIKVLKLQQ---QGALKSFIDECNALKSTRHRNILRVITACSSVDLEG 461 (717)
Q Consensus 386 ~~~~~y~~~~~ig~g~~g~v~~~~~~-~~~~vavK~~~~~~---~~~~~~~~~e~~~l~~l~h~ni~~~~~~~~~~~~~~ 461 (717)
...++|++.+.||+|+||.||.|.++ +++.||+|++.... ......+.+|+++++.++||||+++++++ .+
T Consensus 12 v~~~~y~i~~~LG~G~fG~V~~~~~~~~~~~~AiK~~~~~~~~~~~~~~~~~~E~~il~~l~hp~Iv~l~~~~-----~~ 86 (384)
T 4fr4_A 12 VNFDHFEILRAIGKGSFGKVCIVQKNDTKKMYAMKYMNKQKCVERNEVRNVFKELQIMQGLEHPFLVNLWYSF-----QD 86 (384)
T ss_dssp CCGGGEEEEEEEECCTTCCEEEEEETTTCCEEEEEEEEHHHHHHTTCHHHHHHHHHHHHTCCCTTBCCEEEEE-----EC
T ss_pred CChHHeEEEEEEeeCCCeEEEEEEECCCCCEEEEEEEehhhcccHHHHHHHHHHHHHHHhCCCCCCCcEEEEE-----Ee
Confidence 34679999999999999999999965 78899999886432 33457788999999999999999999995 44
Q ss_pred CceEEEEEecCCCCChhhhccCCCCCcccccccCHHHHHHHHHHHHHHHHHHHhcCCCCeeecCCCCCCEEeCCCCceEE
Q 005045 462 NDFKALVFEFMSNGNLDQWLHPSPAEHYQFKKLSVIQRLNIAIDVASALDYLHHHCDTPIAHCDLKPSNVLLDKDMTAHV 541 (717)
Q Consensus 462 ~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~dlkp~NIll~~~~~~kl 541 (717)
.+..|+||||++|++|.+++... ..+++..+..++.||+.||+|||+. ||+||||||+||+++.+|.+||
T Consensus 87 ~~~~~lv~e~~~gg~L~~~l~~~-------~~l~~~~~~~~~~qi~~aL~~LH~~---givHrDlkp~NIll~~~g~vkL 156 (384)
T 4fr4_A 87 EEDMFMVVDLLLGGDLRYHLQQN-------VHFKEETVKLFICELVMALDYLQNQ---RIIHRDMKPDNILLDEHGHVHI 156 (384)
T ss_dssp SSEEEEEECCCTTEEHHHHHHTT-------CCCCHHHHHHHHHHHHHHHHHHHHT---TEECCCCSGGGEEECTTSCEEE
T ss_pred CCEEEEEEecCCCCcHHHHHHhc-------CCCCHHHHHHHHHHHHHHHHHHHHC---CceeccCcHHHeEECCCCCEEE
Confidence 55899999999999999999865 5689999999999999999999998 9999999999999999999999
Q ss_pred eeeccchhcccccCCCCCCcceeecccccccccCCCccCC----CCCcccchhhHHHHHHHHHhCCCCCCCCCCCchhh-
Q 005045 542 GDFGLAKFLFEISDNPSKNQTVSIGLKGSIGYIPPEHMNG----QVSILGDIYSYGILLLEMFTGKRPTGDMFKDDFSI- 616 (717)
Q Consensus 542 ~Dfg~~~~~~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~----~~~~~sDvwslG~vl~elltg~~p~~~~~~~~~~~- 616 (717)
+|||++..... ........||+.|+|||++.+ .++.++|||||||++|+|++|..||..........
T Consensus 157 ~DFG~a~~~~~--------~~~~~~~~gt~~Y~aPE~~~~~~~~~~~~~~DiwSlG~il~elltG~~Pf~~~~~~~~~~~ 228 (384)
T 4fr4_A 157 TDFNIAAMLPR--------ETQITTMAGTKPYMAPEMFSSRKGAGYSFAVDWWSLGVTAYELLRGRRPYHIRSSTSSKEI 228 (384)
T ss_dssp CCCTTCEECCT--------TCCBCCCCSCGGGCCGGGTCCCSSCCBCTTHHHHHHHHHHHHHHHSSCSSCCCTTSCHHHH
T ss_pred eccceeeeccC--------CCceeccCCCccccCCeeeccCCCCCCCccceeechHHHHHHHHhCCCCCCCCCCccHHHH
Confidence 99999986521 122334679999999999753 37899999999999999999999997543322111
Q ss_pred hHHHHhcCChhhhhhcCCCCCCCCCCcHHHHHHHHHHHHHHhhhhhhhcchhhhHHHHHHHHHHhhccCCCCcCCCCC-H
Q 005045 617 HMFVSMALPDHVMDILDPSMPLDEENDEEQIEEVIEEKEMMIHIDLEVNTKNKLEECFVSVLRIGLMCSTTSPRERIA-M 695 (717)
Q Consensus 617 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~cl~~~p~~Rps-~ 695 (717)
...... .... .+..++..+.+++.+||+.+|++||+ +
T Consensus 229 ~~~~~~-----------~~~~-------------------------------~p~~~s~~~~~li~~lL~~dP~~R~s~~ 266 (384)
T 4fr4_A 229 VHTFET-----------TVVT-------------------------------YPSAWSQEMVSLLKKLLEPNPDQRFSQL 266 (384)
T ss_dssp HHHHHH-----------CCCC-------------------------------CCTTSCHHHHHHHHHHSCSSGGGSCCSH
T ss_pred HHHHhh-----------cccC-------------------------------CCCcCCHHHHHHHHHHhcCCHhHhcccH
Confidence 000000 0000 01112556789999999999999998 6
Q ss_pred HHHHH
Q 005045 696 NVVVN 700 (717)
Q Consensus 696 ~eil~ 700 (717)
++|.+
T Consensus 267 ~~l~~ 271 (384)
T 4fr4_A 267 SDVQN 271 (384)
T ss_dssp HHHHT
T ss_pred HHHHc
Confidence 66653
No 78
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=100.00 E-value=6.1e-38 Score=344.06 Aligned_cols=321 Identities=28% Similarity=0.392 Sum_probs=221.8
Q ss_pred eecEEEcCCCcCcCCCCcCCcCCCCCCEEECCCCcccccCCcCCCCCCCCCEEEccCccccccCCccccCCCCCCEEecc
Q 005045 11 MTQDLNLTYNYLSGKIPTNLSHCTELRSFEASVNDFVGQIPNQLSSLTKLEIIGLGGSNLTGNVPAWIGNFSSLKALSLA 90 (717)
Q Consensus 11 ~~~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~ 90 (717)
++++|+|++|.+++..| |..+++|++|++++|.+++..+ +.++++|++|+|++|.+++ ++. +..+++|++|+|+
T Consensus 69 ~L~~L~Ls~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~L~~n~l~~-~~~-~~~l~~L~~L~l~ 142 (466)
T 1o6v_A 69 NLTQINFSNNQLTDITP--LKNLTKLVDILMNNNQIADITP--LANLTNLTGLTLFNNQITD-IDP-LKNLTNLNRLELS 142 (466)
T ss_dssp TCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCC-CGG-GTTCTTCSEEEEE
T ss_pred CCCEEECCCCccCCchh--hhccccCCEEECCCCccccChh--hcCCCCCCEEECCCCCCCC-ChH-HcCCCCCCEEECC
Confidence 44445555555443222 4444555555555554442222 4445555555555555442 222 4444555555555
Q ss_pred CCcCcccCChhhhccCCCCeEeccCCCCCCCCCccccCCCCccEEEcccCcccccCCcccccCCCCcceeeccccccccc
Q 005045 91 WNNLRGSIPNELGQLSGLGFFTLYGNFISGIIPSSIYNISSIYYFSVTQNQLHGQLPTDVGLTLPNLKIFAGAVNYFTGS 170 (717)
Q Consensus 91 ~n~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~~l~~~~~~~l~~L~~L~l~~n~l~~~ 170 (717)
+|.+++ ++ .+..+++|+.|+++ |.+.+. ..+.++++|++|++++|.++ .++. +..+++|+.|++++|.+.+.
T Consensus 143 ~n~l~~-~~-~~~~l~~L~~L~l~-~~~~~~--~~~~~l~~L~~L~l~~n~l~-~~~~--l~~l~~L~~L~l~~n~l~~~ 214 (466)
T 1o6v_A 143 SNTISD-IS-ALSGLTSLQQLSFG-NQVTDL--KPLANLTTLERLDISSNKVS-DISV--LAKLTNLESLIATNNQISDI 214 (466)
T ss_dssp EEEECC-CG-GGTTCTTCSEEEEE-ESCCCC--GGGTTCTTCCEEECCSSCCC-CCGG--GGGCTTCSEEECCSSCCCCC
T ss_pred CCccCC-Ch-hhccCCcccEeecC-CcccCc--hhhccCCCCCEEECcCCcCC-CChh--hccCCCCCEEEecCCccccc
Confidence 555442 22 24445555555553 233322 23777788888888888887 4443 45788888888888888865
Q ss_pred CCccCCCCCCCCEEeccCccccccCCCCccCCCCCCeeeccccccCCcccCchhhhhhhccCCCCCEEEeecCcccCcCc
Q 005045 171 IPVSLSNASNLQVLDFAENGLTGTIPGNFGSLKDLVRLNFDQNELGSREIGDLNFLKFLANCTSLEVLGLARNSFGGEMP 250 (717)
Q Consensus 171 ~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~~~p 250 (717)
.+ +..+++|++|++++|.+++. ..+..+++|+.|++++|.++... + +..+++|+.|++++|.+++ ++
T Consensus 215 ~~--~~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~l~~n~l~~~~------~--~~~l~~L~~L~l~~n~l~~-~~ 281 (466)
T 1o6v_A 215 TP--LGILTNLDELSLNGNQLKDI--GTLASLTNLTDLDLANNQISNLA------P--LSGLTKLTELKLGANQISN-IS 281 (466)
T ss_dssp GG--GGGCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCCCG------G--GTTCTTCSEEECCSSCCCC-CG
T ss_pred cc--ccccCCCCEEECCCCCcccc--hhhhcCCCCCEEECCCCccccch------h--hhcCCCCCEEECCCCccCc-cc
Confidence 55 67788888888888888843 35778888888888888888764 2 7788899999999999884 44
Q ss_pred hhhhhccccccEEecCCCccCCCCCccccCCCCCCEEEccCCcCccccchhhhcCCCCCeEEcccCcCCCCCCccccccc
Q 005045 251 ISIANLSTHLRRLTMGENLMHGNIPVGIGNLVNLNLLGLEGNNLSGSVPEVIGRLNKLEGLGLNVNKFSGLIPSSLGNLT 330 (717)
Q Consensus 251 ~~~~~~~~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~ 330 (717)
. +..+ ++|+.|++++|.+.+..+ +..+++|+.|+|++|++++..| +..+++|++|++++|++++. ..+..++
T Consensus 282 ~-~~~l-~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~--~~l~~l~ 353 (466)
T 1o6v_A 282 P-LAGL-TALTNLELNENQLEDISP--ISNLKNLTYLTLYFNNISDISP--VSSLTKLQRLFFYNNKVSDV--SSLANLT 353 (466)
T ss_dssp G-GTTC-TTCSEEECCSSCCSCCGG--GGGCTTCSEEECCSSCCSCCGG--GGGCTTCCEEECCSSCCCCC--GGGTTCT
T ss_pred c-ccCC-CccCeEEcCCCcccCchh--hcCCCCCCEEECcCCcCCCchh--hccCccCCEeECCCCccCCc--hhhccCC
Confidence 3 5555 589999999999886443 7888999999999999986655 78889999999999999876 4688899
Q ss_pred ccceeecccccccccCCcCccCcCCCceEEeecccCCC
Q 005045 331 ILTRLWMEENRLEGSIPPSLGNCQKLLVLNLSSNDLNG 368 (717)
Q Consensus 331 ~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~ 368 (717)
+|+.|++++|++++..| +..+++|+.|++++|++++
T Consensus 354 ~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~~~~ 389 (466)
T 1o6v_A 354 NINWLSAGHNQISDLTP--LANLTRITQLGLNDQAWTN 389 (466)
T ss_dssp TCCEEECCSSCCCBCGG--GTTCTTCCEEECCCEEEEC
T ss_pred CCCEEeCCCCccCccch--hhcCCCCCEEeccCCcccC
Confidence 99999999999987666 8889999999999999986
No 79
>3h4j_B AMPK kdaid, SNF1-like protein kinase SSP2; ATP-binding, nucleotide-binding, phosphoprotei serine/threonine-protein kinase, transferase; 2.80A {Schizosaccharomyces pombe}
Probab=100.00 E-value=9.2e-40 Score=340.75 Aligned_cols=248 Identities=24% Similarity=0.364 Sum_probs=198.4
Q ss_pred ccccccccccccCcccccceEEEEe-CCCchhhhHHhHhhh---hhHHHHHHHHHHHHhcCCCCceeEEEEeeccccCCC
Q 005045 386 KSTDNFSKENLIGTGSFGSVYKGTL-GDGTIVAIKVLKLQQ---QGALKSFIDECNALKSTRHRNILRVITACSSVDLEG 461 (717)
Q Consensus 386 ~~~~~y~~~~~ig~g~~g~v~~~~~-~~~~~vavK~~~~~~---~~~~~~~~~e~~~l~~l~h~ni~~~~~~~~~~~~~~ 461 (717)
...++|++.+.||+|+||.||+|.+ .+++.||+|++.... ......+.+|+++++.++||||+++++++. .
T Consensus 6 ~~i~~Y~i~~~lG~G~~g~V~~a~~~~~~~~vaiK~~~~~~~~~~~~~~~~~~E~~~l~~l~hpnIv~l~~~~~-----~ 80 (336)
T 3h4j_B 6 RHIGPYIIRETLGEGSFGKVKLATHYKTQQKVALKFISRQLLKKSDMHMRVEREISYLKLLRHPHIIKLYDVIT-----T 80 (336)
T ss_dssp SEETTEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEEHHHHHHTTCSHHHHHHHHHHTTCCCTTBCCEEEEEE-----C
T ss_pred cccCCEEEEEEEecCCCeEEEEEEECCCCCEEEEEEEehHHccchhHHHHHHHHHHHHHhCCCCCCCeEEEEEE-----e
Confidence 3467999999999999999999996 489999999886432 233467889999999999999999999954 4
Q ss_pred CceEEEEEecCCCCChhhhccCCCCCcccccccCHHHHHHHHHHHHHHHHHHHhcCCCCeeecCCCCCCEEeCCCCceEE
Q 005045 462 NDFKALVFEFMSNGNLDQWLHPSPAEHYQFKKLSVIQRLNIAIDVASALDYLHHHCDTPIAHCDLKPSNVLLDKDMTAHV 541 (717)
Q Consensus 462 ~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~dlkp~NIll~~~~~~kl 541 (717)
.+..++||||+ +|++.+++... ..+++..+..++.||+.||+|||+. ||+||||||+||+++.++.+||
T Consensus 81 ~~~~~lv~E~~-~g~l~~~l~~~-------~~l~~~~~~~i~~qi~~aL~~LH~~---givH~Dlkp~NIll~~~~~~kl 149 (336)
T 3h4j_B 81 PTDIVMVIEYA-GGELFDYIVEK-------KRMTEDEGRRFFQQIICAIEYCHRH---KIVHRDLKPENLLLDDNLNVKI 149 (336)
T ss_dssp SSEEEEEECCC-CEEHHHHHHHH-------CSCCHHHHHHHHHHHHHHHHHHHHH---TCCCCCCSTTTEEECTTCCEEE
T ss_pred CCEEEEEEECC-CCcHHHHHHHc-------CCCCHHHHHHHHHHHHHHHHHHHHC---CeEecCCchhhEEEcCCCCEEE
Confidence 55899999999 68999888643 5689999999999999999999998 9999999999999999999999
Q ss_pred eeeccchhcccccCCCCCCcceeecccccccccCCCccCCC-C-CcccchhhHHHHHHHHHhCCCCCCCCCCCchhhhHH
Q 005045 542 GDFGLAKFLFEISDNPSKNQTVSIGLKGSIGYIPPEHMNGQ-V-SILGDIYSYGILLLEMFTGKRPTGDMFKDDFSIHMF 619 (717)
Q Consensus 542 ~Dfg~~~~~~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~-~-~~~sDvwslG~vl~elltg~~p~~~~~~~~~~~~~~ 619 (717)
+|||++...... .......||+.|+|||++.+. + +.++|||||||++|+|++|..||........
T Consensus 150 ~DFG~s~~~~~~--------~~~~~~~gt~~y~aPE~~~~~~~~~~~~DiwslG~il~~ll~g~~Pf~~~~~~~~----- 216 (336)
T 3h4j_B 150 ADFGLSNIMTDG--------NFLKTSCGSPNYAAPEVINGKLYAGPEVDVWSCGIVLYVMLVGRLPFDDEFIPNL----- 216 (336)
T ss_dssp CCSSCTBTTTTS--------BTTCCCTTSTTTSCGGGSCCSGGGCHHHHHHHHHHHHHHHHHSSCSSBCSSSTTC-----
T ss_pred EEeccceeccCC--------cccccccCCcCcCCHHHHcCCCCCCCccchhHHHHHHHHHHhCCCCCCCccHHHH-----
Confidence 999999865211 112335689999999998775 3 7899999999999999999999975422210
Q ss_pred HHhcCChhhhhhcCCCCCCCCCCcHHHHHHHHHHHHHHhhhhhhhcchhhhHHHHHHHHHHhhccCCCCcCCCCCHHHHH
Q 005045 620 VSMALPDHVMDILDPSMPLDEENDEEQIEEVIEEKEMMIHIDLEVNTKNKLEECFVSVLRIGLMCSTTSPRERIAMNVVV 699 (717)
Q Consensus 620 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~cl~~~p~~Rps~~eil 699 (717)
...+..... . .+...+..+.+++.+||+.||.+|||++|++
T Consensus 217 --------~~~i~~~~~-~------------------------------~p~~~s~~~~~li~~~L~~dP~~Rpt~~eil 257 (336)
T 3h4j_B 217 --------FKKVNSCVY-V------------------------------MPDFLSPGAQSLIRRMIVADPMQRITIQEIR 257 (336)
T ss_dssp --------BCCCCSSCC-C------------------------------CCTTSCHHHHHHHHTTSCSSGGGSCCHHHHT
T ss_pred --------HHHHHcCCC-C------------------------------CcccCCHHHHHHHHHHcCCChhHCcCHHHHH
Confidence 000000000 0 0011245678899999999999999999998
Q ss_pred HH
Q 005045 700 NN 701 (717)
Q Consensus 700 ~~ 701 (717)
+.
T Consensus 258 ~h 259 (336)
T 3h4j_B 258 RD 259 (336)
T ss_dssp TC
T ss_pred hC
Confidence 63
No 80
>3l9p_A Anaplastic lymphoma kinase; kinase domain, ATP-binding, glycoprotein, membrane, nucleotide-binding, phosphoprotein, proto-oncogene; 1.80A {Homo sapiens}
Probab=100.00 E-value=5.5e-40 Score=348.15 Aligned_cols=268 Identities=24% Similarity=0.390 Sum_probs=208.0
Q ss_pred ccccccccccccCcccccceEEEEeC------CCchhhhHHhHhh-hhhHHHHHHHHHHHHhcCCCCceeEEEEeecccc
Q 005045 386 KSTDNFSKENLIGTGSFGSVYKGTLG------DGTIVAIKVLKLQ-QQGALKSFIDECNALKSTRHRNILRVITACSSVD 458 (717)
Q Consensus 386 ~~~~~y~~~~~ig~g~~g~v~~~~~~------~~~~vavK~~~~~-~~~~~~~~~~e~~~l~~l~h~ni~~~~~~~~~~~ 458 (717)
...++|++.+.||+|+||.||+|++. +++.||+|++... .......+.+|+.++++++||||+++++++.
T Consensus 68 ~~~~~~~~~~~LG~G~fg~Vy~~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~hpnIv~~~~~~~--- 144 (367)
T 3l9p_A 68 VPRKNITLIRGLGHGAFGEVYEGQVSGMPNDPSPLQVAVKTLPEVCSEQDELDFLMEALIISKFNHQNIVRCIGVSL--- 144 (367)
T ss_dssp CCGGGEEEEEECCCCSSSCEEEEEECC-----CCEEEEEEECCSSCCHHHHHHHHHHHHHHHHCCCTTBCCEEEEEC---
T ss_pred cCHhHeEEeeEeeeCCCEEEEEEEEccCCCCCcceeEEEEecccccChhhHHHHHHHHHHHHhCCCCCCCeEEEEEe---
Confidence 34678999999999999999999842 5678999998643 2334567889999999999999999999953
Q ss_pred CCCCceEEEEEecCCCCChhhhccCCCCCcccccccCHHHHHHHHHHHHHHHHHHHhcCCCCeeecCCCCCCEEeCCCC-
Q 005045 459 LEGNDFKALVFEFMSNGNLDQWLHPSPAEHYQFKKLSVIQRLNIAIDVASALDYLHHHCDTPIAHCDLKPSNVLLDKDM- 537 (717)
Q Consensus 459 ~~~~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~dlkp~NIll~~~~- 537 (717)
.....++||||+++++|.+++............+++..++.++.||+.||+|||+. +|+||||||+||+++.+|
T Consensus 145 --~~~~~~lv~e~~~~g~L~~~l~~~~~~~~~~~~~~~~~~~~i~~qi~~aL~~LH~~---~ivHrDlkp~NIll~~~~~ 219 (367)
T 3l9p_A 145 --QSLPRFILLELMAGGDLKSFLRETRPRPSQPSSLAMLDLLHVARDIACGCQYLEEN---HFIHRDIAARNCLLTCPGP 219 (367)
T ss_dssp --SSSSCEEEEECCTTEEHHHHHHHHSCCSSSCCCCCHHHHHHHHHHHHHHHHHHHHT---TCCCSCCCGGGEEESCSST
T ss_pred --cCCCCEEEEEeCCCCCHHHHHHhhccccCccccccHHHHHHHHHHHHHHHHHHHhC---CeeCCCCChhhEEEecCCC
Confidence 44578999999999999999875432222335689999999999999999999998 999999999999999555
Q ss_pred --ceEEeeeccchhcccccCCCCCCcceeecccccccccCCCcc-CCCCCcccchhhHHHHHHHHHh-CCCCCCCCCCCc
Q 005045 538 --TAHVGDFGLAKFLFEISDNPSKNQTVSIGLKGSIGYIPPEHM-NGQVSILGDIYSYGILLLEMFT-GKRPTGDMFKDD 613 (717)
Q Consensus 538 --~~kl~Dfg~~~~~~~~~~~~~~~~~~~~~~~~~~~y~aPE~~-~~~~~~~sDvwslG~vl~ellt-g~~p~~~~~~~~ 613 (717)
.+||+|||.++........ .......+|+.|+|||++ .+.++.++|||||||++|||++ |..||......
T Consensus 220 ~~~~kL~DFG~a~~~~~~~~~-----~~~~~~~~t~~y~aPE~~~~~~~~~~~DvwslG~il~ellt~g~~pf~~~~~~- 293 (367)
T 3l9p_A 220 GRVAKIGDFGMARDIYRAGYY-----RKGGCAMLPVKWMPPEAFMEGIFTSKTDTWSFGVLLWEIFSLGYMPYPSKSNQ- 293 (367)
T ss_dssp TCCEEECCCHHHHHHHHHSSC-----TTCCGGGSCGGGCCHHHHHHCCCCHHHHHHHHHHHHHHHHTTSCCSSTTCCHH-
T ss_pred CceEEECCCcccccccccccc-----ccCCCcCCcccEECHHHhcCCCCCcHHHHHHHHHHHHHHHhCCCCCCCCCCHH-
Confidence 5999999999865332211 112234578899999996 4568999999999999999998 99999754221
Q ss_pred hhhhHHHHhcCChhhhhhcCCCCCCCCCCcHHHHHHHHHHHHHHhhhhhhhcchhhhHHHHHHHHHHhhccCCCCcCCCC
Q 005045 614 FSIHMFVSMALPDHVMDILDPSMPLDEENDEEQIEEVIEEKEMMIHIDLEVNTKNKLEECFVSVLRIGLMCSTTSPRERI 693 (717)
Q Consensus 614 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~cl~~~p~~Rp 693 (717)
.......... ... .+..++..+.+++.+||+.+|++||
T Consensus 294 -~~~~~i~~~~--------~~~---------------------------------~~~~~~~~l~~li~~~l~~dP~~Rp 331 (367)
T 3l9p_A 294 -EVLEFVTSGG--------RMD---------------------------------PPKNCPGPVYRIMTQCWQHQPEDRP 331 (367)
T ss_dssp -HHHHHHHTTC--------CCC---------------------------------CCTTCCHHHHHHHHHHTCSSGGGSC
T ss_pred -HHHHHHHcCC--------CCC---------------------------------CCccCCHHHHHHHHHHcCCCHhHCc
Confidence 1111111000 000 1122355688999999999999999
Q ss_pred CHHHHHHHHHHHHHHH
Q 005045 694 AMNVVVNNLKTIRNCF 709 (717)
Q Consensus 694 s~~eil~~l~~i~~~~ 709 (717)
|+.||++.|+.+.+..
T Consensus 332 s~~eil~~l~~~~~~~ 347 (367)
T 3l9p_A 332 NFAIILERIEYCTQDP 347 (367)
T ss_dssp CHHHHHHHHHHHHHCH
T ss_pred CHHHHHHHHHHHhhCh
Confidence 9999999999988654
No 81
>1csn_A Casein kinase-1; phosphotransferase; HET: ATP; 2.00A {Schizosaccharomyces pombe} SCOP: d.144.1.7 PDB: 1eh4_A* 2csn_A*
Probab=100.00 E-value=1.2e-39 Score=336.12 Aligned_cols=273 Identities=18% Similarity=0.201 Sum_probs=211.4
Q ss_pred ccccccccccccCcccccceEEEEe-CCCchhhhHHhHhhhhhHHHHHHHHHHHHhcC-CCCceeEEEEeeccccCCCCc
Q 005045 386 KSTDNFSKENLIGTGSFGSVYKGTL-GDGTIVAIKVLKLQQQGALKSFIDECNALKST-RHRNILRVITACSSVDLEGND 463 (717)
Q Consensus 386 ~~~~~y~~~~~ig~g~~g~v~~~~~-~~~~~vavK~~~~~~~~~~~~~~~e~~~l~~l-~h~ni~~~~~~~~~~~~~~~~ 463 (717)
...++|++.+.||+|++|.||+|.+ .+++.||+|++.... ....+.+|+++++.+ +|++++++++++. ...
T Consensus 7 ~~~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~--~~~~~~~e~~~~~~l~~~~~i~~~~~~~~-----~~~ 79 (298)
T 1csn_A 7 VVGVHYKVGRRIGEGSFGVIFEGTNLLNNQQVAIKFEPRRS--DAPQLRDEYRTYKLLAGCTGIPNVYYFGQ-----EGL 79 (298)
T ss_dssp EETTTEEEEEEEEECSSCEEEEEEETTTTEEEEEEEEECCT--TSCCHHHHHHHHHHTTTCTTCCCEEEEEE-----ETT
T ss_pred ccccceEEEEEEeecCCEEEEEEEECCCCcEEEEEEeccCC--ccHHHHHHHHHHHHHhcCCCCCeEEeecC-----CCc
Confidence 3467899999999999999999995 489999999875432 235677899999999 8999999998853 455
Q ss_pred eEEEEEecCCCCChhhhccCCCCCcccccccCHHHHHHHHHHHHHHHHHHHhcCCCCeeecCCCCCCEEeCCCCc-----
Q 005045 464 FKALVFEFMSNGNLDQWLHPSPAEHYQFKKLSVIQRLNIAIDVASALDYLHHHCDTPIAHCDLKPSNVLLDKDMT----- 538 (717)
Q Consensus 464 ~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~dlkp~NIll~~~~~----- 538 (717)
..++||||+ +++|.+++.... ..+++..+..++.||+.||+|||+. +|+||||||+||+++.++.
T Consensus 80 ~~~lv~e~~-~~~L~~~l~~~~------~~~~~~~~~~i~~qi~~~l~~lH~~---~ivH~Dlkp~NIl~~~~~~~~~~~ 149 (298)
T 1csn_A 80 HNVLVIDLL-GPSLEDLLDLCG------RKFSVKTVAMAAKQMLARVQSIHEK---SLVYRDIKPDNFLIGRPNSKNANM 149 (298)
T ss_dssp EEEEEEECC-CCBHHHHHHHTT------TCCCHHHHHHHHHHHHHHHHHHHTT---TEECCCCCGGGEEECCSSSTTTTC
T ss_pred eeEEEEEec-CCCHHHHHHHhc------cCCCHHHHHHHHHHHHHHHHHHHhC---CEecCCCCHHHEEeccCCCCCCCe
Confidence 899999999 999999997542 4589999999999999999999997 9999999999999987775
Q ss_pred eEEeeeccchhcccccCCCCCCcceeecccccccccCCCccCC-CCCcccchhhHHHHHHHHHhCCCCCCCCCCCchhhh
Q 005045 539 AHVGDFGLAKFLFEISDNPSKNQTVSIGLKGSIGYIPPEHMNG-QVSILGDIYSYGILLLEMFTGKRPTGDMFKDDFSIH 617 (717)
Q Consensus 539 ~kl~Dfg~~~~~~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~-~~~~~sDvwslG~vl~elltg~~p~~~~~~~~~~~~ 617 (717)
+||+|||.+.....................||+.|+|||++.+ .++.++|||||||++|+|++|..||...........
T Consensus 150 ~kl~Dfg~~~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Di~slG~il~el~~g~~pf~~~~~~~~~~~ 229 (298)
T 1csn_A 150 IYVVDFGMVKFYRDPVTKQHIPYREKKNLSGTARYMSINTHLGREQSRRDDLEALGHVFMYFLRGSLPWQGLKAATNKQK 229 (298)
T ss_dssp EEECCCTTCEESBCTTTCCBCCCCCCCCCCSCTTTCCHHHHTTCCCCHHHHHHHHHHHHHHHHHSSCTTSSCCSCCHHHH
T ss_pred EEEEECccccccccccccccccccCccCCCCCcccCCchhhcCCCCChHHHHHHHHHHHHHHHcCCCCcchhhccccHHH
Confidence 9999999998764332222222223345679999999999765 489999999999999999999999976533221100
Q ss_pred HHHHhcCChhhhhhcCCCCCCCCCCcHHHHHHHHHHHHHHhhhhhhhcchhhhHHHHHHHHHHhhccCCCCcCCCCCHHH
Q 005045 618 MFVSMALPDHVMDILDPSMPLDEENDEEQIEEVIEEKEMMIHIDLEVNTKNKLEECFVSVLRIGLMCSTTSPRERIAMNV 697 (717)
Q Consensus 618 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~cl~~~p~~Rps~~e 697 (717)
...+...... . ........++..+.+++.+||+.+|++|||+++
T Consensus 230 -----------------------------~~~~~~~~~~-~------~~~~~~~~~~~~l~~li~~~l~~dp~~RP~~~~ 273 (298)
T 1csn_A 230 -----------------------------YERIGEKKQS-T------PLRELCAGFPEEFYKYMHYARNLAFDATPDYDY 273 (298)
T ss_dssp -----------------------------HHHHHHHHHH-S------CHHHHTTTSCHHHHHHHHHHHHCCTTCCCCHHH
T ss_pred -----------------------------HHHHHhhccC-c------cHHHHHhhCcHHHHHHHHHHhcCCcccCCCHHH
Confidence 0000000000 0 000011234667899999999999999999999
Q ss_pred HHHHHHHHHHHHHh
Q 005045 698 VVNNLKTIRNCFLE 711 (717)
Q Consensus 698 il~~l~~i~~~~~~ 711 (717)
|++.|+++.++...
T Consensus 274 l~~~l~~~~~~~~~ 287 (298)
T 1csn_A 274 LQGLFSKVLERLNT 287 (298)
T ss_dssp HHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHhcCC
Confidence 99999999876543
No 82
>4f0f_A Serine/threonine-protein kinase ROCO4; LRRK2, ATP-binding, nucleotide serine/threonine-protein kinase, transferase, signaling Pro; HET: ACP; 1.80A {Dictyostelium discoideum} PDB: 4f0g_A 4f1t_A* 4f1m_A* 4f1o_A*
Probab=100.00 E-value=5.1e-39 Score=329.47 Aligned_cols=253 Identities=26% Similarity=0.463 Sum_probs=201.2
Q ss_pred cccccccccccCcccccceEEEEeC-CCchhhhHHhHhhhh-------hHHHHHHHHHHHHhcCCCCceeEEEEeecccc
Q 005045 387 STDNFSKENLIGTGSFGSVYKGTLG-DGTIVAIKVLKLQQQ-------GALKSFIDECNALKSTRHRNILRVITACSSVD 458 (717)
Q Consensus 387 ~~~~y~~~~~ig~g~~g~v~~~~~~-~~~~vavK~~~~~~~-------~~~~~~~~e~~~l~~l~h~ni~~~~~~~~~~~ 458 (717)
..++|++.+.||+|+||.||+|++. +++.||+|++..... ...+.+.+|++++++++||||+++++++..
T Consensus 17 ~~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~-- 94 (287)
T 4f0f_A 17 ADNEIEYEKQIGKGGFGLVHKGRLVKDKSVVAIKSLILGDSEGETEMIEKFQEFQREVFIMSNLNHPNIVKLYGLMHN-- 94 (287)
T ss_dssp CSTTEEEEEECCCCSSSCEEEEEETTTCCEEEEEECCCCTTTCCHHHHCCSHHHHHHHHHHTTCCCTTBCCEEEEETT--
T ss_pred hhccceehhccccCCceeEEEEEEcCCceEEEEEEeeccccccchhHHHHHHHHHHHHHHHHhCCCCCchhhheeecC--
Confidence 4578999999999999999999964 889999999854321 112678899999999999999999998633
Q ss_pred CCCCceEEEEEecCCCCChhhhccCCCCCcccccccCHHHHHHHHHHHHHHHHHHHhcCCCC--eeecCCCCCCEEeCCC
Q 005045 459 LEGNDFKALVFEFMSNGNLDQWLHPSPAEHYQFKKLSVIQRLNIAIDVASALDYLHHHCDTP--IAHCDLKPSNVLLDKD 536 (717)
Q Consensus 459 ~~~~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~i~~~i~~~l~~LH~~~~~~--ivH~dlkp~NIll~~~ 536 (717)
. .++||||+++++|.+++.... ..+++..+..++.|++.|++|||+. + |+||||||+||+++.+
T Consensus 95 ---~--~~lv~e~~~~~~L~~~l~~~~------~~~~~~~~~~~~~~l~~~l~~lH~~---~~~ivH~dikp~Nil~~~~ 160 (287)
T 4f0f_A 95 ---P--PRMVMEFVPCGDLYHRLLDKA------HPIKWSVKLRLMLDIALGIEYMQNQ---NPPIVHRDLRSPNIFLQSL 160 (287)
T ss_dssp ---T--TEEEEECCTTCBHHHHHHCTT------SCCCHHHHHHHHHHHHHHHHHHHTS---SSCCBCSCCSGGGEEESCC
T ss_pred ---C--CeEEEEecCCCCHHHHHhccc------CCccHHHHHHHHHHHHHHHHHHHhC---CCCeecCCCCcceEEEecc
Confidence 2 279999999999998886543 5689999999999999999999997 8 9999999999999887
Q ss_pred Cc-----eEEeeeccchhcccccCCCCCCcceeecccccccccCCCccCC---CCCcccchhhHHHHHHHHHhCCCCCCC
Q 005045 537 MT-----AHVGDFGLAKFLFEISDNPSKNQTVSIGLKGSIGYIPPEHMNG---QVSILGDIYSYGILLLEMFTGKRPTGD 608 (717)
Q Consensus 537 ~~-----~kl~Dfg~~~~~~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~---~~~~~sDvwslG~vl~elltg~~p~~~ 608 (717)
+. +||+|||.+.... .......|++.|+|||++.+ .++.++|||||||++|+|++|..||..
T Consensus 161 ~~~~~~~~kl~Dfg~~~~~~----------~~~~~~~g~~~y~aPE~~~~~~~~~~~~~Di~slG~~l~~l~~g~~pf~~ 230 (287)
T 4f0f_A 161 DENAPVCAKVADFGLSQQSV----------HSVSGLLGNFQWMAPETIGAEEESYTEKADTYSFAMILYTILTGEGPFDE 230 (287)
T ss_dssp CTTCSCCEEECCCTTCBCCS----------SCEECCCCCCTTSCGGGSSCSSCEECHHHHHHHHHHHHHHHHHSSCTTTT
T ss_pred CCCCceeEEeCCCCcccccc----------ccccccCCCccccCchhhccCCCCcCchhhHHHHHHHHHHHHcCCCCCcc
Confidence 76 9999999987431 12334668999999999733 368999999999999999999999976
Q ss_pred CCCCchhhhHHHHhcCChhhhhhcCCCCCCCCCCcHHHHHHHHHHHHHHhhhhhhhcchhhhHHHHHHHHHHhhccCCCC
Q 005045 609 MFKDDFSIHMFVSMALPDHVMDILDPSMPLDEENDEEQIEEVIEEKEMMIHIDLEVNTKNKLEECFVSVLRIGLMCSTTS 688 (717)
Q Consensus 609 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~cl~~~ 688 (717)
............... ...+.. +..++..+.+++.+||+.+
T Consensus 231 ~~~~~~~~~~~~~~~-------~~~~~~---------------------------------~~~~~~~l~~li~~~l~~d 270 (287)
T 4f0f_A 231 YSYGKIKFINMIREE-------GLRPTI---------------------------------PEDCPPRLRNVIELCWSGD 270 (287)
T ss_dssp CCCCHHHHHHHHHHS-------CCCCCC---------------------------------CTTSCHHHHHHHHHHTCSS
T ss_pred ccccHHHHHHHHhcc-------CCCCCC---------------------------------CcccCHHHHHHHHHHhcCC
Confidence 544332222111110 001111 1123567889999999999
Q ss_pred cCCCCCHHHHHHHHHHH
Q 005045 689 PRERIAMNVVVNNLKTI 705 (717)
Q Consensus 689 p~~Rps~~eil~~l~~i 705 (717)
|++|||++|+++.|+++
T Consensus 271 p~~Rps~~~ll~~L~~l 287 (287)
T 4f0f_A 271 PKKRPHFSYIVKELSEL 287 (287)
T ss_dssp GGGSCCHHHHHHHHHTC
T ss_pred hhhCcCHHHHHHHHHhC
Confidence 99999999999999764
No 83
>3og7_A AKAP9-BRAF fusion protein; proto-oncogene, V600E, kinase, transferase; HET: 032; 2.45A {Homo sapiens} SCOP: d.144.1.7 PDB: 4fk3_A* 3c4c_A* 3c4d_A* 3idp_A* 4g9r_A* 3ii5_A* 4e26_A* 3ppj_A* 3ppk_A* 3prf_A* 3pri_A* 3psb_A* 3psd_A* 3q4c_A* 3skc_A* 3tv4_A* 3tv6_A* 3d4q_A* 4e4x_A* 4g9c_A* ...
Probab=100.00 E-value=1e-39 Score=334.80 Aligned_cols=268 Identities=30% Similarity=0.474 Sum_probs=198.5
Q ss_pred CcccccccccccccccccCcccccceEEEEeCCCchhhhHHhHhh--hhhHHHHHHHHHHHHhcCCCCceeEEEEeeccc
Q 005045 380 SYSDISKSTDNFSKENLIGTGSFGSVYKGTLGDGTIVAIKVLKLQ--QQGALKSFIDECNALKSTRHRNILRVITACSSV 457 (717)
Q Consensus 380 s~~~~~~~~~~y~~~~~ig~g~~g~v~~~~~~~~~~vavK~~~~~--~~~~~~~~~~e~~~l~~l~h~ni~~~~~~~~~~ 457 (717)
..+......++|++.++||+|+||.||+|++.. .||+|++... .....+.+.+|++++++++||||+++++++.
T Consensus 15 ~~~~~ei~~~~y~~~~~lG~G~~g~Vy~~~~~~--~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~-- 90 (289)
T 3og7_A 15 AADDWEIPDGQITVGQRIGSGSFGTVYKGKWHG--DVAVKMLNVTAPTPQQLQAFKNEVGVLRKTRHVNILLFMGYST-- 90 (289)
T ss_dssp ---CCBCCTTSCEEEEEEEECSSEEEEEEESSS--EEEEEEESCSSCCHHHHHHHHHHHHHHTTCCCTTBCCEEEEEC--
T ss_pred CCCCCccCccceeeeeEecCCCCeEEEEEEEcC--ceEEEEEeccCCCHHHHHHHHHHHHHHHhCCCCcEEEEEeecc--
Confidence 344556668899999999999999999998643 4899988644 2344678899999999999999999998642
Q ss_pred cCCCCceEEEEEecCCCCChhhhccCCCCCcccccccCHHHHHHHHHHHHHHHHHHHhcCCCCeeecCCCCCCEEeCCCC
Q 005045 458 DLEGNDFKALVFEFMSNGNLDQWLHPSPAEHYQFKKLSVIQRLNIAIDVASALDYLHHHCDTPIAHCDLKPSNVLLDKDM 537 (717)
Q Consensus 458 ~~~~~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~dlkp~NIll~~~~ 537 (717)
....++||||+++++|.+++.... ..+++..+..++.||+.||+|||+. +|+||||||+||+++.++
T Consensus 91 ----~~~~~lv~e~~~~~~L~~~l~~~~------~~~~~~~~~~i~~qi~~~L~~lH~~---~i~H~Dlkp~Nil~~~~~ 157 (289)
T 3og7_A 91 ----APQLAIVTQWCEGSSLYHHLHASE------TKFEMKKLIDIARQTARGMDYLHAK---SIIHRDLKSNNIFLHEDN 157 (289)
T ss_dssp ----SSSCEEEEECCCEEEHHHHHTTC---------CCHHHHHHHHHHHHHHHHHHHHT---TCCCSCCCGGGEEEETTT
T ss_pred ----CCccEEEEEecCCCcHHHHHhhcc------CCCCHHHHHHHHHHHHHHHHHHHhC---CcccccCccceEEECCCC
Confidence 235799999999999999996543 5689999999999999999999998 999999999999999999
Q ss_pred ceEEeeeccchhcccccCCCCCCcceeecccccccccCCCccC----CCCCcccchhhHHHHHHHHHhCCCCCCCCCCCc
Q 005045 538 TAHVGDFGLAKFLFEISDNPSKNQTVSIGLKGSIGYIPPEHMN----GQVSILGDIYSYGILLLEMFTGKRPTGDMFKDD 613 (717)
Q Consensus 538 ~~kl~Dfg~~~~~~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~----~~~~~~sDvwslG~vl~elltg~~p~~~~~~~~ 613 (717)
.+||+|||.+....... .........|++.|+|||++. +.++.++|||||||++|+|++|..||.......
T Consensus 158 ~~kl~Dfg~~~~~~~~~-----~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~~~Di~slG~il~el~~g~~p~~~~~~~~ 232 (289)
T 3og7_A 158 TVKIGDFGLATEKSRWS-----GSHQFEQLSGSILWMAPEVIRMQDSNPYSFQSDVYAFGIVLYELMTGQLPYSNINNRD 232 (289)
T ss_dssp EEEECCCC-----------------------CCCTTCCHHHHC----CCSCHHHHHHHHHHHHHHHHHSSCTTSSCCCHH
T ss_pred CEEEccceecccccccc-----ccccccccCCCccccCchhhcccCCCCCCcccchHHHHHHHHHHHHCCCCccccchHH
Confidence 99999999997652211 111223356899999999964 347889999999999999999999997653322
Q ss_pred hhhhHHHHhcCChhhhhhcCCCCCCCCCCcHHHHHHHHHHHHHHhhhhhhhcchhhhHHHHHHHHHHhhccCCCCcCCCC
Q 005045 614 FSIHMFVSMALPDHVMDILDPSMPLDEENDEEQIEEVIEEKEMMIHIDLEVNTKNKLEECFVSVLRIGLMCSTTSPRERI 693 (717)
Q Consensus 614 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~cl~~~p~~Rp 693 (717)
...........+ +.... ....++..+.+++.+||+.+|++||
T Consensus 233 ~~~~~~~~~~~~--------~~~~~------------------------------~~~~~~~~l~~li~~~l~~~p~~Rp 274 (289)
T 3og7_A 233 QIIEMVGRGSLS--------PDLSK------------------------------VRSNCPKRMKRLMAECLKKKRDERP 274 (289)
T ss_dssp HHHHHHHHTSCC--------CCTTS------------------------------SCTTSCHHHHHHHHHHTCSSGGGSC
T ss_pred HHHHHhcccccC--------cchhh------------------------------ccccCCHHHHHHHHHHccCChhhCC
Confidence 111111111111 00000 1122356789999999999999999
Q ss_pred CHHHHHHHHHHHHH
Q 005045 694 AMNVVVNNLKTIRN 707 (717)
Q Consensus 694 s~~eil~~l~~i~~ 707 (717)
|++|+++.|+++.+
T Consensus 275 s~~ell~~L~~l~~ 288 (289)
T 3og7_A 275 SFPRILAEIEELAR 288 (289)
T ss_dssp CHHHHHHHHHHTTC
T ss_pred CHHHHHHHHHHHhh
Confidence 99999999998754
No 84
>2ivs_A Proto-oncogene tyrosine-protein kinase receptor RET; nucleotide-binding, hirschsprung disease, phosphorylation, disease mutation; HET: ACK; 2.00A {Homo sapiens} PDB: 2ivt_A* 2ivu_A* 2x2k_A* 2x2l_A* 2x2m_A* 2ivv_A*
Probab=100.00 E-value=1e-39 Score=339.35 Aligned_cols=272 Identities=22% Similarity=0.375 Sum_probs=210.8
Q ss_pred cccccccccccccccccCcccccceEEEEe------CCCchhhhHHhHhh-hhhHHHHHHHHHHHHhcCCCCceeEEEEe
Q 005045 381 YSDISKSTDNFSKENLIGTGSFGSVYKGTL------GDGTIVAIKVLKLQ-QQGALKSFIDECNALKSTRHRNILRVITA 453 (717)
Q Consensus 381 ~~~~~~~~~~y~~~~~ig~g~~g~v~~~~~------~~~~~vavK~~~~~-~~~~~~~~~~e~~~l~~l~h~ni~~~~~~ 453 (717)
-..+....++|++.+.||+|+||.||+|.+ .+++.||+|++... .....+.+.+|++++++++||||++++++
T Consensus 15 ~~~~~~~~~~y~~~~~lg~G~~g~V~~~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~hp~iv~~~~~ 94 (314)
T 2ivs_A 15 DPKWEFPRKNLVLGKTLGEGEFGKVVKATAFHLKGRAGYTTVAVKMLKENASPSELRDLLSEFNVLKQVNHPHVIKLYGA 94 (314)
T ss_dssp CTTTBCCGGGEEEEEEEEECSSSEEEEEEEETGGGCSSEEEEEEEECCTTCCHHHHHHHHHHHHHHTTCCCTTBCCEEEE
T ss_pred CcccccchhheeeeeeecccCCeeEEEEEEeccCcccCcceEEEEeccCCCCHHHHHHHHHHHHHHhhCCCCceeeEEEE
Confidence 344556688999999999999999999985 24578999998754 23456788999999999999999999999
Q ss_pred eccccCCCCceEEEEEecCCCCChhhhccCCCCCc-----------------ccccccCHHHHHHHHHHHHHHHHHHHhc
Q 005045 454 CSSVDLEGNDFKALVFEFMSNGNLDQWLHPSPAEH-----------------YQFKKLSVIQRLNIAIDVASALDYLHHH 516 (717)
Q Consensus 454 ~~~~~~~~~~~~~lv~e~~~~~~L~~~l~~~~~~~-----------------~~~~~~~~~~~~~i~~~i~~~l~~LH~~ 516 (717)
+ ...+..++||||+++++|.+++....... .....+++..+..++.||+.||+|||+.
T Consensus 95 ~-----~~~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~qi~~~l~~lH~~ 169 (314)
T 2ivs_A 95 C-----SQDGPLLLIVEYAKYGSLRGFLRESRKVGPGYLGSGGSRNSSSLDHPDERALTMGDLISFAWQISQGMQYLAEM 169 (314)
T ss_dssp E-----CSSSSCEEEEECCTTCBHHHHHHHTTTSTTEEC----------------CEECHHHHHHHHHHHHHHHHHHHHT
T ss_pred E-----ecCCceEEEEeecCCCCHHHHHHHHhhccCCcccccccccccccccccccCcCHHHHHHHHHHHHHHHHHHHHC
Confidence 5 34557899999999999999987542100 0113589999999999999999999998
Q ss_pred CCCCeeecCCCCCCEEeCCCCceEEeeeccchhcccccCCCCCCcceeecccccccccCCCccCC-CCCcccchhhHHHH
Q 005045 517 CDTPIAHCDLKPSNVLLDKDMTAHVGDFGLAKFLFEISDNPSKNQTVSIGLKGSIGYIPPEHMNG-QVSILGDIYSYGIL 595 (717)
Q Consensus 517 ~~~~ivH~dlkp~NIll~~~~~~kl~Dfg~~~~~~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~-~~~~~sDvwslG~v 595 (717)
+|+||||||+||+++.++.+||+|||.+...... ..........+++.|+|||++.+ .++.++|||||||+
T Consensus 170 ---~ivH~dikp~NIli~~~~~~kl~Dfg~~~~~~~~-----~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~i 241 (314)
T 2ivs_A 170 ---KLVHRDLAARNILVAEGRKMKISDFGLSRDVYEE-----DSYVKRSQGRIPVKWMAIESLFDHIYTTQSDVWSFGVL 241 (314)
T ss_dssp ---TEECCCCSGGGEEEETTTEEEECCCTTCEECTTT-----SCEECSSCCCSCGGGCCHHHHHHCEECHHHHHHHHHHH
T ss_pred ---CCcccccchheEEEcCCCCEEEcccccccccccc-----ccceeccCCCCcccccChhhhcCCCcCchhhHHHHHHH
Confidence 9999999999999999999999999999765221 11112223446788999999654 48999999999999
Q ss_pred HHHHHh-CCCCCCCCCCCchhhhHHHHhcCChhhhhhcCCCCCCCCCCcHHHHHHHHHHHHHHhhhhhhhcchhhhHHHH
Q 005045 596 LLEMFT-GKRPTGDMFKDDFSIHMFVSMALPDHVMDILDPSMPLDEENDEEQIEEVIEEKEMMIHIDLEVNTKNKLEECF 674 (717)
Q Consensus 596 l~ellt-g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 674 (717)
+|+|++ |..||........ ....... .... .+..++
T Consensus 242 l~el~t~g~~p~~~~~~~~~--~~~~~~~--------~~~~---------------------------------~~~~~~ 278 (314)
T 2ivs_A 242 LWEIVTLGGNPYPGIPPERL--FNLLKTG--------HRME---------------------------------RPDNCS 278 (314)
T ss_dssp HHHHHTTSCCSSTTCCGGGH--HHHHHTT--------CCCC---------------------------------CCTTCC
T ss_pred HHHHHhCCCCCCCCCCHHHH--HHHhhcC--------CcCC---------------------------------CCccCC
Confidence 999999 9999976533211 1111100 0000 011225
Q ss_pred HHHHHHhhccCCCCcCCCCCHHHHHHHHHHHHHH
Q 005045 675 VSVLRIGLMCSTTSPRERIAMNVVVNNLKTIRNC 708 (717)
Q Consensus 675 ~~l~~li~~cl~~~p~~Rps~~eil~~l~~i~~~ 708 (717)
..+.+++.+||+.+|++|||+.|+++.|+++..+
T Consensus 279 ~~~~~li~~~l~~dp~~Rps~~~l~~~l~~~~~~ 312 (314)
T 2ivs_A 279 EEMYRLMLQCWKQEPDKRPVFADISKDLEKMMVK 312 (314)
T ss_dssp HHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHccCChhhCcCHHHHHHHHHHHHhh
Confidence 6688999999999999999999999999998764
No 85
>1k9a_A Carboxyl-terminal SRC kinase; COOH-terminal SRC kinase, CSK, SFK, signal transduction, SH2, SH3, SRC homology, tyrosine kinase; 2.50A {Rattus norvegicus} SCOP: b.34.2.1 d.93.1.1 d.144.1.7 PDB: 1jeg_A
Probab=100.00 E-value=1.5e-39 Score=354.29 Aligned_cols=261 Identities=26% Similarity=0.388 Sum_probs=209.5
Q ss_pred cccccccccccccccccCcccccceEEEEeCCCchhhhHHhHhhhhhHHHHHHHHHHHHhcCCCCceeEEEEeeccccCC
Q 005045 381 YSDISKSTDNFSKENLIGTGSFGSVYKGTLGDGTIVAIKVLKLQQQGALKSFIDECNALKSTRHRNILRVITACSSVDLE 460 (717)
Q Consensus 381 ~~~~~~~~~~y~~~~~ig~g~~g~v~~~~~~~~~~vavK~~~~~~~~~~~~~~~e~~~l~~l~h~ni~~~~~~~~~~~~~ 460 (717)
..++....++|++.+.||+|+||.||+|.+. ++.||||+++... ..+.+.+|++++++++||||+++++++..
T Consensus 185 ~~~~~i~~~~~~~~~~lG~G~fg~V~~~~~~-~~~vavK~~~~~~--~~~~~~~E~~~l~~l~h~niv~~~~~~~~---- 257 (450)
T 1k9a_A 185 RSGWALNMKELKLLQTIGKGEFGDVMLGDYR-GNKVAVKCIKNDA--TAQAFLAEASVMTQLRHSNLVQLLGVIVE---- 257 (450)
T ss_dssp HTTCBCCGGGEEEEEEEEECSSEEEEEEEET-TEEEEEEEESSCT--TSHHHHHHHHHHHTCCCTTBCCEEEEEEC----
T ss_pred ccccccChHHeEEEeeecCcCCeeEEEEEec-CCeEEEEEeCCch--HHHHHHHHHHHHHhccCCCEEEEEEEEEc----
Confidence 3455667889999999999999999999985 7899999987543 45778999999999999999999998633
Q ss_pred CCceEEEEEecCCCCChhhhccCCCCCcccccccCHHHHHHHHHHHHHHHHHHHhcCCCCeeecCCCCCCEEeCCCCceE
Q 005045 461 GNDFKALVFEFMSNGNLDQWLHPSPAEHYQFKKLSVIQRLNIAIDVASALDYLHHHCDTPIAHCDLKPSNVLLDKDMTAH 540 (717)
Q Consensus 461 ~~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~dlkp~NIll~~~~~~k 540 (717)
.....++||||+++++|.+++..... ..+++..+..++.||+.||+|||+. +|+||||||+||+++.++.+|
T Consensus 258 ~~~~~~iv~e~~~~g~L~~~l~~~~~-----~~~~~~~~~~~~~qi~~~l~~LH~~---~ivHrDlkp~Nill~~~~~~k 329 (450)
T 1k9a_A 258 EKGGLYIVTEYMAKGSLVDYLRSRGR-----SVLGGDCLLKFSLDVCEAMEYLEGN---NFVHRDLAARNVLVSEDNVAK 329 (450)
T ss_dssp TTSCEEEEEECCTTCBHHHHHHHHCT-----TTCCHHHHHHHHHHHHHHHHHHHHT---TEECSCCCGGGEEECTTSCEE
T ss_pred CCCceEEEEEecCCCcHHHHHHhcCC-----CCCCHHHHHHHHHHHHHHHHHHHhC---CeeCCCCCHhhEEECCCCCEE
Confidence 33478999999999999999975421 3478999999999999999999998 999999999999999999999
Q ss_pred EeeeccchhcccccCCCCCCcceeecccccccccCCCccC-CCCCcccchhhHHHHHHHHHh-CCCCCCCCCCCchhhhH
Q 005045 541 VGDFGLAKFLFEISDNPSKNQTVSIGLKGSIGYIPPEHMN-GQVSILGDIYSYGILLLEMFT-GKRPTGDMFKDDFSIHM 618 (717)
Q Consensus 541 l~Dfg~~~~~~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~-~~~~~~sDvwslG~vl~ellt-g~~p~~~~~~~~~~~~~ 618 (717)
|+|||+++.... ......++..|+|||++. +.++.++|||||||++|||++ |..||......+.. .
T Consensus 330 l~DfG~a~~~~~----------~~~~~~~~~~y~aPE~~~~~~~~~~sDvwslG~~l~el~t~g~~P~~~~~~~~~~--~ 397 (450)
T 1k9a_A 330 VSDFGLTKEASS----------TQDTGKLPVKWTAPEALREKKFSTKSDVWSFGILLWEIYSFGRVPYPRIPLKDVV--P 397 (450)
T ss_dssp ECCCTTCEECC----------------CCCTTTSCHHHHHSSCCCHHHHHHHHHHHHHHHHTTTCCSSTTSCTTTHH--H
T ss_pred EeeCCCcccccc----------cccCCCCCcceeCHHHhcCCCCCcHHHHHHHHHHHHHHHhCCCCCCCCCCHHHHH--H
Confidence 999999875411 111234678899999964 458999999999999999998 99999765333211 1
Q ss_pred HHHhcCChhhhhhcCCCCCCCCCCcHHHHHHHHHHHHHHhhhhhhhcchhhhHHHHHHHHHHhhccCCCCcCCCCCHHHH
Q 005045 619 FVSMALPDHVMDILDPSMPLDEENDEEQIEEVIEEKEMMIHIDLEVNTKNKLEECFVSVLRIGLMCSTTSPRERIAMNVV 698 (717)
Q Consensus 619 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~cl~~~p~~Rps~~ei 698 (717)
.+... .. . +.+..|+..+.+++.+||+.+|++|||+.||
T Consensus 398 ~i~~~--------~~--~-------------------------------~~p~~~~~~l~~li~~cl~~dp~~Rpt~~~l 436 (450)
T 1k9a_A 398 RVEKG--------YK--M-------------------------------DAPDGCPPAVYDVMKNCWHLDAATRPTFLQL 436 (450)
T ss_dssp HHHTT--------CC--C-------------------------------CCCTTCCHHHHHHHHHHTCSSGGGSCCHHHH
T ss_pred HHHcC--------CC--C-------------------------------CCCCcCCHHHHHHHHHHcCCChhHCcCHHHH
Confidence 11100 00 0 0122346778999999999999999999999
Q ss_pred HHHHHHHHHHH
Q 005045 699 VNNLKTIRNCF 709 (717)
Q Consensus 699 l~~l~~i~~~~ 709 (717)
++.|+.++...
T Consensus 437 ~~~L~~i~~~~ 447 (450)
T 1k9a_A 437 REQLEHIRTHE 447 (450)
T ss_dssp HHHHHHHHHTT
T ss_pred HHHHHHHHHhh
Confidence 99999998653
No 86
>3kfa_A Tyrosine-protein kinase ABL1; CML, drug resistance, inhibitor, ATP-binding, nucleotide-binding, oncogene, TRAN; HET: B91; 1.22A {Mus musculus} SCOP: d.144.1.7 PDB: 2qoh_A* 3kf4_A* 3k5v_A* 1fpu_A* 1m52_A* 1iep_A* 2hzn_A* 1opj_A* 3ms9_A* 3mss_A* 3ik3_A* 2z60_A* 2e2b_A* 3pyy_A* 3oxz_A* 2g1t_A* 3ue4_A* 3oy3_A* 2hiw_A* 2v7a_A* ...
Probab=100.00 E-value=2.5e-39 Score=331.90 Aligned_cols=269 Identities=24% Similarity=0.423 Sum_probs=215.6
Q ss_pred CcccccccccccccccccCcccccceEEEEeC-CCchhhhHHhHhhhhhHHHHHHHHHHHHhcCCCCceeEEEEeecccc
Q 005045 380 SYSDISKSTDNFSKENLIGTGSFGSVYKGTLG-DGTIVAIKVLKLQQQGALKSFIDECNALKSTRHRNILRVITACSSVD 458 (717)
Q Consensus 380 s~~~~~~~~~~y~~~~~ig~g~~g~v~~~~~~-~~~~vavK~~~~~~~~~~~~~~~e~~~l~~l~h~ni~~~~~~~~~~~ 458 (717)
.+.++....++|++.+.||+|++|.||.|.++ +++.||+|.+.... ...+.+.+|++++++++||||+++++++
T Consensus 4 ~~~~~~~~~~~~~~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~-~~~~~~~~E~~~l~~l~h~~i~~~~~~~---- 78 (288)
T 3kfa_A 4 NYDKWEMERTDITMKHKLGGGQYGEVYEGVWKKYSLTVAVKTLKEDT-MEVEEFLKEAAVMKEIKHPNLVQLLGVC---- 78 (288)
T ss_dssp TCCTTBCCGGGEEEEEESGGGTTCSEEEEEEGGGTEEEEEEEECSCS-THHHHHHHHHHHHHHCCCTTBCCEEEEE----
T ss_pred chhcccccccceeEEeecCCCCceeEEEeEecCCCEEEEEEecCcCH-HHHHHHHHHHHHHHhCCCCCEeeEEEEE----
Confidence 34566677899999999999999999999966 68899999987543 3457788999999999999999999995
Q ss_pred CCCCceEEEEEecCCCCChhhhccCCCCCcccccccCHHHHHHHHHHHHHHHHHHHhcCCCCeeecCCCCCCEEeCCCCc
Q 005045 459 LEGNDFKALVFEFMSNGNLDQWLHPSPAEHYQFKKLSVIQRLNIAIDVASALDYLHHHCDTPIAHCDLKPSNVLLDKDMT 538 (717)
Q Consensus 459 ~~~~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~dlkp~NIll~~~~~ 538 (717)
.+.+..++||||+++++|.+++..... ..+++..+..++.||+.||+|||+. +|+||||||+||+++.++.
T Consensus 79 -~~~~~~~~v~e~~~~~~L~~~~~~~~~-----~~~~~~~~~~i~~~i~~~l~~lH~~---~i~H~dikp~Nil~~~~~~ 149 (288)
T 3kfa_A 79 -TREPPFYIITEFMTYGNLLDYLRECNR-----QEVSAVVLLYMATQISSAMEYLEKK---NFIHRDLAARNCLVGENHL 149 (288)
T ss_dssp -CSSSSEEEEEECCTTEEHHHHHHHCCT-----TTSCHHHHHHHHHHHHHHHHHHHHH---TCCCSCCSGGGEEECGGGC
T ss_pred -ccCCCEEEEEEcCCCCcHHHHHHhccc-----CCccHhHHHHHHHHHHHHHHHHHHC---CccCCCCCcceEEEcCCCC
Confidence 445579999999999999999975422 5689999999999999999999998 9999999999999999999
Q ss_pred eEEeeeccchhcccccCCCCCCcceeecccccccccCCCccC-CCCCcccchhhHHHHHHHHHh-CCCCCCCCCCCchhh
Q 005045 539 AHVGDFGLAKFLFEISDNPSKNQTVSIGLKGSIGYIPPEHMN-GQVSILGDIYSYGILLLEMFT-GKRPTGDMFKDDFSI 616 (717)
Q Consensus 539 ~kl~Dfg~~~~~~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~-~~~~~~sDvwslG~vl~ellt-g~~p~~~~~~~~~~~ 616 (717)
+||+|||.+..... ..........+++.|+|||++. +.++.++|||||||++|+|++ |..||........
T Consensus 150 ~~l~Dfg~~~~~~~------~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~ll~~g~~p~~~~~~~~~-- 221 (288)
T 3kfa_A 150 VKVADFGLSRLMTG------DTYTAHAGAKFPIKWTAPESLAYNKFSIKSDVWAFGVLLWEIATYGMSPYPGIDLSQV-- 221 (288)
T ss_dssp EEECCCCGGGTSCS------SSSEEETTEEECGGGCCHHHHHHCCCCHHHHHHHHHHHHHHHHTTSCCSSTTCCGGGH--
T ss_pred EEEccCccceeccC------CccccccCCccccCcCChhhhccCCCCchhhHHHHHHHHHHHHhCCCCCCCCCCHHHH--
Confidence 99999999986521 1222333455778899999965 468999999999999999999 9999976432211
Q ss_pred hHHHHhcCChhhhhhcCCCCCCCCCCcHHHHHHHHHHHHHHhhhhhhhcchhhhHHHHHHHHHHhhccCCCCcCCCCCHH
Q 005045 617 HMFVSMALPDHVMDILDPSMPLDEENDEEQIEEVIEEKEMMIHIDLEVNTKNKLEECFVSVLRIGLMCSTTSPRERIAMN 696 (717)
Q Consensus 617 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~cl~~~p~~Rps~~ 696 (717)
..... ...... .+..++..+.+++.+|++.+|++|||++
T Consensus 222 ~~~~~--------~~~~~~---------------------------------~~~~~~~~l~~li~~~l~~dp~~Rps~~ 260 (288)
T 3kfa_A 222 YELLE--------KDYRME---------------------------------RPEGCPEKVYELMRACWQWNPSDRPSFA 260 (288)
T ss_dssp HHHHH--------TTCCCC---------------------------------CCTTCCHHHHHHHHHHTCSSGGGSCCHH
T ss_pred HHHHh--------ccCCCC---------------------------------CCCCCCHHHHHHHHHHhCCChhhCcCHH
Confidence 11111 000000 1112256788999999999999999999
Q ss_pred HHHHHHHHHHHHHHh
Q 005045 697 VVVNNLKTIRNCFLE 711 (717)
Q Consensus 697 eil~~l~~i~~~~~~ 711 (717)
|+++.|+.+.++...
T Consensus 261 ~~~~~l~~~~~~~~~ 275 (288)
T 3kfa_A 261 EIHQAFETMFQESSI 275 (288)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccc
Confidence 999999999876543
No 87
>3txo_A PKC-L, NPKC-ETA, protein kinase C ETA type; phosphotransferase, transferase-transferase inhibito; HET: TPO 07U; 2.05A {Homo sapiens}
Probab=100.00 E-value=6.3e-40 Score=344.72 Aligned_cols=248 Identities=27% Similarity=0.379 Sum_probs=194.4
Q ss_pred cccccccccccCcccccceEEEEeC-CCchhhhHHhHhh---hhhHHHHHHHHHHHHhcC-CCCceeEEEEeeccccCCC
Q 005045 387 STDNFSKENLIGTGSFGSVYKGTLG-DGTIVAIKVLKLQ---QQGALKSFIDECNALKST-RHRNILRVITACSSVDLEG 461 (717)
Q Consensus 387 ~~~~y~~~~~ig~g~~g~v~~~~~~-~~~~vavK~~~~~---~~~~~~~~~~e~~~l~~l-~h~ni~~~~~~~~~~~~~~ 461 (717)
..++|++.+.||+|+||.||+|+++ +++.||+|++... .......+..|.++++.+ .||||+++++++ .+
T Consensus 21 ~~~~y~~~~~lG~G~fg~V~~~~~~~~~~~~AvK~~~~~~~~~~~~~~~~~~E~~il~~~~~hp~Iv~l~~~~-----~~ 95 (353)
T 3txo_A 21 GIDNFEFIRVLGKGSFGKVMLARVKETGDLYAVKVLKKDVILQDDDVECTMTEKRILSLARNHPFLTQLFCCF-----QT 95 (353)
T ss_dssp --CCEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEEHHHHHHHTTHHHHHHHHHHHHHTTTCTTBCCEEEEE-----EC
T ss_pred chhheEEEEEEeeCCCEEEEEEEEcCCCCEEEEEEEEHHHhcchhHHHHHHHHHHHHHhccCCCceeeEEEEE-----Ee
Confidence 4578999999999999999999965 7899999998654 233456788999999988 799999999995 44
Q ss_pred CceEEEEEecCCCCChhhhccCCCCCcccccccCHHHHHHHHHHHHHHHHHHHhcCCCCeeecCCCCCCEEeCCCCceEE
Q 005045 462 NDFKALVFEFMSNGNLDQWLHPSPAEHYQFKKLSVIQRLNIAIDVASALDYLHHHCDTPIAHCDLKPSNVLLDKDMTAHV 541 (717)
Q Consensus 462 ~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~dlkp~NIll~~~~~~kl 541 (717)
.+..|+||||++|++|.+++... ..+++..++.++.||+.||+|||+. +|+||||||+||+++.+|.+||
T Consensus 96 ~~~~~lv~E~~~gg~L~~~l~~~-------~~~~~~~~~~~~~qi~~aL~~LH~~---givHrDlkp~NILl~~~g~ikL 165 (353)
T 3txo_A 96 PDRLFFVMEFVNGGDLMFHIQKS-------RRFDEARARFYAAEIISALMFLHDK---GIIYRDLKLDNVLLDHEGHCKL 165 (353)
T ss_dssp SSEEEEEEECCCSCBHHHHHHHH-------SSCCHHHHHHHHHHHHHHHHHHHHT---TCBCCCCCGGGEEECTTSCEEE
T ss_pred CCEEEEEEeCCCCCcHHHHHHHc-------CCCCHHHHHHHHHHHHHHHHHHHHC---CCcccCCCHHHEEECCCCCEEE
Confidence 56899999999999999998754 5689999999999999999999998 9999999999999999999999
Q ss_pred eeeccchhcccccCCCCCCcceeecccccccccCCCccCCC-CCcccchhhHHHHHHHHHhCCCCCCCCCCCchhhhHHH
Q 005045 542 GDFGLAKFLFEISDNPSKNQTVSIGLKGSIGYIPPEHMNGQ-VSILGDIYSYGILLLEMFTGKRPTGDMFKDDFSIHMFV 620 (717)
Q Consensus 542 ~Dfg~~~~~~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~-~~~~sDvwslG~vl~elltg~~p~~~~~~~~~~~~~~~ 620 (717)
+|||++.... ..........||+.|+|||++.+. ++.++|||||||++|||++|..||......+ ...
T Consensus 166 ~DFG~a~~~~-------~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~ell~G~~Pf~~~~~~~--~~~-- 234 (353)
T 3txo_A 166 ADFGMCKEGI-------CNGVTTATFCGTPDYIAPEILQEMLYGPAVDWWAMGVLLYEMLCGHAPFEAENEDD--LFE-- 234 (353)
T ss_dssp CCCTTCBCSC-------C---------CCGGGCCHHHHHHHHCTTHHHHHHHHHHHHHHHHSSCSSCCSSHHH--HHH--
T ss_pred ccccceeecc-------cCCccccccCCCcCeEChhhcCCCCcCCccCCCcchHHHHHHHhCCCCCCCCCHHH--HHH--
Confidence 9999987531 111223346799999999997654 8999999999999999999999997542211 111
Q ss_pred HhcCChhhhhhcCCCCCCCCCCcHHHHHHHHHHHHHHhhhhhhhcchhhhHHHHHHHHHHhhccCCCCcCCCCCH-----
Q 005045 621 SMALPDHVMDILDPSMPLDEENDEEQIEEVIEEKEMMIHIDLEVNTKNKLEECFVSVLRIGLMCSTTSPRERIAM----- 695 (717)
Q Consensus 621 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~cl~~~p~~Rps~----- 695 (717)
.+........ ...+..+.+++.+||+.+|++||++
T Consensus 235 ---------~i~~~~~~~p-------------------------------~~~~~~~~~li~~lL~~dP~~R~~~~~~~~ 274 (353)
T 3txo_A 235 ---------AILNDEVVYP-------------------------------TWLHEDATGILKSFMTKNPTMRLGSLTQGG 274 (353)
T ss_dssp ---------HHHHCCCCCC-------------------------------TTSCHHHHHHHHHHTCSSGGGSTTSGGGTC
T ss_pred ---------HHHcCCCCCC-------------------------------CCCCHHHHHHHHHHhhhCHHHccCCcccCC
Confidence 1111111100 1114457889999999999999998
Q ss_pred -HHHHH
Q 005045 696 -NVVVN 700 (717)
Q Consensus 696 -~eil~ 700 (717)
+||++
T Consensus 275 ~~~il~ 280 (353)
T 3txo_A 275 EHAILR 280 (353)
T ss_dssp THHHHT
T ss_pred HHHHhh
Confidence 67764
No 88
>2zv2_A Calcium/calmodulin-dependent protein kinase kinas; beta, camkk2, E.C.2.7.11.17, phosphorylation, AMPKK, metabolism, binding, calmodulin-binding; HET: 609; 2.40A {Homo sapiens}
Probab=100.00 E-value=2.2e-39 Score=333.97 Aligned_cols=251 Identities=22% Similarity=0.339 Sum_probs=193.7
Q ss_pred cccccccccccCcccccceEEEEeC-CCchhhhHHhHhhh--------------------------hhHHHHHHHHHHHH
Q 005045 387 STDNFSKENLIGTGSFGSVYKGTLG-DGTIVAIKVLKLQQ--------------------------QGALKSFIDECNAL 439 (717)
Q Consensus 387 ~~~~y~~~~~ig~g~~g~v~~~~~~-~~~~vavK~~~~~~--------------------------~~~~~~~~~e~~~l 439 (717)
..++|++.+.||+|+||.||+|++. +++.||+|++.... ....+.+.+|++++
T Consensus 11 ~~~~y~~~~~lG~G~~g~Vy~a~~~~~~~~vavK~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l 90 (298)
T 2zv2_A 11 QLNQYTLKDEIGKGSYGVVKLAYNENDNTYYAMKVLSKKKLIRQAGFPRRPPPRGTRPAPGGCIQPRGPIEQVYQEIAIL 90 (298)
T ss_dssp EETTEEEEEEEEC--CCEEEEEEETTTTEEEEEEEEECC-------------------------------CHHHHHHHHH
T ss_pred eecceEEEeEEeecCCEEEEEEEECCCCcEEEEEEeehhhhhhhcccccccccccccccccccccccchHHHHHHHHHHH
Confidence 3578999999999999999999965 78999999985332 11235688999999
Q ss_pred hcCCCCceeEEEEeeccccCCCCceEEEEEecCCCCChhhhccCCCCCcccccccCHHHHHHHHHHHHHHHHHHHhcCCC
Q 005045 440 KSTRHRNILRVITACSSVDLEGNDFKALVFEFMSNGNLDQWLHPSPAEHYQFKKLSVIQRLNIAIDVASALDYLHHHCDT 519 (717)
Q Consensus 440 ~~l~h~ni~~~~~~~~~~~~~~~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~i~~~i~~~l~~LH~~~~~ 519 (717)
++++||||+++++++.. ...+..++||||+++++|.++... ..+++..+..++.||+.||+|||+.
T Consensus 91 ~~l~h~~iv~~~~~~~~---~~~~~~~lv~e~~~~~~l~~~~~~--------~~~~~~~~~~~~~qi~~~l~~lH~~--- 156 (298)
T 2zv2_A 91 KKLDHPNVVKLVEVLDD---PNEDHLYMVFELVNQGPVMEVPTL--------KPLSEDQARFYFQDLIKGIEYLHYQ--- 156 (298)
T ss_dssp HTCCCTTBCCEEEEEEC---SSSSEEEEEEECCTTCBSCCSSCS--------SCCCHHHHHHHHHHHHHHHHHHHHT---
T ss_pred HhCCCCCCCeEEEEEEc---CCCCEEEEEEecCCCCcHHHHhhc--------CCCCHHHHHHHHHHHHHHHHHHHHC---
Confidence 99999999999999653 225689999999999999887542 4689999999999999999999998
Q ss_pred CeeecCCCCCCEEeCCCCceEEeeeccchhcccccCCCCCCcceeecccccccccCCCccCCC----CCcccchhhHHHH
Q 005045 520 PIAHCDLKPSNVLLDKDMTAHVGDFGLAKFLFEISDNPSKNQTVSIGLKGSIGYIPPEHMNGQ----VSILGDIYSYGIL 595 (717)
Q Consensus 520 ~ivH~dlkp~NIll~~~~~~kl~Dfg~~~~~~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~----~~~~sDvwslG~v 595 (717)
+|+||||||+||+++.++.+||+|||.+..... .........||+.|+|||++.+. ++.++|||||||+
T Consensus 157 ~ivH~Dlkp~Nil~~~~~~~kl~Dfg~~~~~~~-------~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~~~Di~slG~~ 229 (298)
T 2zv2_A 157 KIIHRDIKPSNLLVGEDGHIKIADFGVSNEFKG-------SDALLSNTVGTPAFMAPESLSETRKIFSGKALDVWAMGVT 229 (298)
T ss_dssp TEECCCCCGGGEEECTTSCEEECCCTTCEECSS-------SSCEECCCCSCGGGCCGGGCCTTCCCEESHHHHHHHHHHH
T ss_pred CeeccCCCHHHEEECCCCCEEEecCCCcccccc-------ccccccCCcCCccccChhhhccCCCCCCCchhhhHhHHHH
Confidence 999999999999999999999999999986521 11223345689999999997654 3788999999999
Q ss_pred HHHHHhCCCCCCCCCCCchhhhHHHHhcCChhhhhhcCCCCCCCCCCcHHHHHHHHHHHHHHhhhhhhhcchhhhHHHHH
Q 005045 596 LLEMFTGKRPTGDMFKDDFSIHMFVSMALPDHVMDILDPSMPLDEENDEEQIEEVIEEKEMMIHIDLEVNTKNKLEECFV 675 (717)
Q Consensus 596 l~elltg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 675 (717)
+|+|++|..||...... ........ ...... ....++.
T Consensus 230 l~~l~~g~~pf~~~~~~--~~~~~~~~-----------~~~~~~-----------------------------~~~~~~~ 267 (298)
T 2zv2_A 230 LYCFVFGQCPFMDERIM--CLHSKIKS-----------QALEFP-----------------------------DQPDIAE 267 (298)
T ss_dssp HHHHHHSSCSSCCSSHH--HHHHHHHH-----------CCCCCC-----------------------------SSSCCCH
T ss_pred HHHHHHCCCCCCCccHH--HHHHHHhc-----------ccCCCC-----------------------------CccccCH
Confidence 99999999999653211 11110000 000000 0011245
Q ss_pred HHHHHhhccCCCCcCCCCCHHHHHH
Q 005045 676 SVLRIGLMCSTTSPRERIAMNVVVN 700 (717)
Q Consensus 676 ~l~~li~~cl~~~p~~Rps~~eil~ 700 (717)
.+.+++.+||+.+|++|||+.|+++
T Consensus 268 ~l~~li~~~l~~dp~~R~s~~e~l~ 292 (298)
T 2zv2_A 268 DLKDLITRMLDKNPESRIVVPEIKL 292 (298)
T ss_dssp HHHHHHHHHTCSCTTTSCCHHHHTT
T ss_pred HHHHHHHHHhhcChhhCCCHHHHhc
Confidence 6789999999999999999999975
No 89
>1mp8_A Focal adhesion kinase 1; tyrosine protein kinase, transferase; HET: ADP; 1.60A {Homo sapiens} SCOP: d.144.1.7 PDB: 2ijm_A* 2etm_A* 3pxk_A* 2jkq_A* 2j0m_B* 2jkm_A* 2j0l_A* 3bz3_A* 2jko_A* 2jkk_A*
Probab=100.00 E-value=1.6e-39 Score=332.08 Aligned_cols=266 Identities=21% Similarity=0.343 Sum_probs=199.6
Q ss_pred CcccccccccccccccccCcccccceEEEEeC----CCchhhhHHhHhh-hhhHHHHHHHHHHHHhcCCCCceeEEEEee
Q 005045 380 SYSDISKSTDNFSKENLIGTGSFGSVYKGTLG----DGTIVAIKVLKLQ-QQGALKSFIDECNALKSTRHRNILRVITAC 454 (717)
Q Consensus 380 s~~~~~~~~~~y~~~~~ig~g~~g~v~~~~~~----~~~~vavK~~~~~-~~~~~~~~~~e~~~l~~l~h~ni~~~~~~~ 454 (717)
+..+.....++|++.+.||+|+||.||+|.+. .+..||+|.+... .....+.+.+|+.++++++||||+++++++
T Consensus 6 s~~~~~~~~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~ 85 (281)
T 1mp8_A 6 STRDYEIQRERIELGRCIGEGQFGDVHQGIYMSPENPALAVAIKTCKNCTSDSVREKFLQEALTMRQFDHPHIVKLIGVI 85 (281)
T ss_dssp ---CCBCCGGGEEEEEEEEECSSSEEEEEEECCC--CCEEEEEEECTTTTSHHHHHHHHHHHHHHHTCCCTTBCCEEEEE
T ss_pred cccceEEehHHeEEEeEeeecCCeeEEEEEEecCCCCceEEEEEeccccCCHHHHHHHHHHHHHHHhCCCCccceEEEEE
Confidence 34556677889999999999999999999964 2456999988653 334567889999999999999999999985
Q ss_pred ccccCCCCceEEEEEecCCCCChhhhccCCCCCcccccccCHHHHHHHHHHHHHHHHHHHhcCCCCeeecCCCCCCEEeC
Q 005045 455 SSVDLEGNDFKALVFEFMSNGNLDQWLHPSPAEHYQFKKLSVIQRLNIAIDVASALDYLHHHCDTPIAHCDLKPSNVLLD 534 (717)
Q Consensus 455 ~~~~~~~~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~dlkp~NIll~ 534 (717)
. .+..++||||+++++|.+++.... ..+++..+..++.|++.||+|||+. +++||||||+||+++
T Consensus 86 ~------~~~~~lv~e~~~~~~L~~~l~~~~------~~~~~~~~~~~~~qi~~~l~~lH~~---~i~H~dlkp~Nil~~ 150 (281)
T 1mp8_A 86 T------ENPVWIIMELCTLGELRSFLQVRK------YSLDLASLILYAYQLSTALAYLESK---RFVHRDIAARNVLVS 150 (281)
T ss_dssp C------SSSCEEEEECCTTEEHHHHHHHTT------TTSCHHHHHHHHHHHHHHHHHHHHT---TCCCSCCSGGGEEEE
T ss_pred c------cCccEEEEecCCCCCHHHHHHhcC------CCCCHHHHHHHHHHHHHHHHHHHhC---CeecccccHHHEEEC
Confidence 2 246799999999999999997542 4689999999999999999999998 999999999999999
Q ss_pred CCCceEEeeeccchhcccccCCCCCCcceeecccccccccCCCccC-CCCCcccchhhHHHHHHHHHh-CCCCCCCCCCC
Q 005045 535 KDMTAHVGDFGLAKFLFEISDNPSKNQTVSIGLKGSIGYIPPEHMN-GQVSILGDIYSYGILLLEMFT-GKRPTGDMFKD 612 (717)
Q Consensus 535 ~~~~~kl~Dfg~~~~~~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~-~~~~~~sDvwslG~vl~ellt-g~~p~~~~~~~ 612 (717)
.++.+||+|||.+....... ........+++.|+|||++. +.++.++|||||||++|+|++ |..||......
T Consensus 151 ~~~~~kl~Dfg~~~~~~~~~------~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~~l~ell~~g~~pf~~~~~~ 224 (281)
T 1mp8_A 151 SNDCVKLGDFGLSRYMEDST------YYKASKGKLPIKWMAPESINFRRFTSASDVWMFGVCMWEILMHGVKPFQGVKNN 224 (281)
T ss_dssp ETTEEEECC-------------------------CCGGGCCHHHHHHCCCSHHHHHHHHHHHHHHHHTTSCCTTTTCCGG
T ss_pred CCCCEEECccccccccCccc------ccccccCCCcccccChhhcccCCCCCccCchHHHHHHHHHHhcCCCCCCcCCHH
Confidence 99999999999998652211 11122334677899999965 458999999999999999997 99999765332
Q ss_pred chhhhHHHHhcCChhhhhhcCCCCCCCCCCcHHHHHHHHHHHHHHhhhhhhhcchhhhHHHHHHHHHHhhccCCCCcCCC
Q 005045 613 DFSIHMFVSMALPDHVMDILDPSMPLDEENDEEQIEEVIEEKEMMIHIDLEVNTKNKLEECFVSVLRIGLMCSTTSPRER 692 (717)
Q Consensus 613 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~cl~~~p~~R 692 (717)
+. ..... ...... .+..++..+.+++.+||+.+|++|
T Consensus 225 ~~--~~~i~-----------~~~~~~------------------------------~~~~~~~~l~~li~~~l~~~p~~R 261 (281)
T 1mp8_A 225 DV--IGRIE-----------NGERLP------------------------------MPPNCPPTLYSLMTKCWAYDPSRR 261 (281)
T ss_dssp GH--HHHHH-----------TTCCCC------------------------------CCTTCCHHHHHHHHHHTCSSGGGS
T ss_pred HH--HHHHH-----------cCCCCC------------------------------CCCCCCHHHHHHHHHHccCChhhC
Confidence 21 11110 000000 111235668899999999999999
Q ss_pred CCHHHHHHHHHHHHHHH
Q 005045 693 IAMNVVVNNLKTIRNCF 709 (717)
Q Consensus 693 ps~~eil~~l~~i~~~~ 709 (717)
||+.|+++.|+++.++.
T Consensus 262 ps~~~l~~~l~~~~~~~ 278 (281)
T 1mp8_A 262 PRFTELKAQLSTILEEE 278 (281)
T ss_dssp CCHHHHHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHHh
Confidence 99999999999998764
No 90
>4euu_A Serine/threonine-protein kinase TBK1; ATP binding, phosphorylation, transferase-transferas inhibitor complex; HET: SEP BX7; 1.80A {Homo sapiens}
Probab=100.00 E-value=2.6e-39 Score=336.84 Aligned_cols=284 Identities=18% Similarity=0.234 Sum_probs=210.3
Q ss_pred ccccccccccccCcccccceEEEEeC-CCchhhhHHhHhhh-hhHHHHHHHHHHHHhcCCCCceeEEEEeeccccCCCCc
Q 005045 386 KSTDNFSKENLIGTGSFGSVYKGTLG-DGTIVAIKVLKLQQ-QGALKSFIDECNALKSTRHRNILRVITACSSVDLEGND 463 (717)
Q Consensus 386 ~~~~~y~~~~~ig~g~~g~v~~~~~~-~~~~vavK~~~~~~-~~~~~~~~~e~~~l~~l~h~ni~~~~~~~~~~~~~~~~ 463 (717)
...++|++.++||+|+||.||+|.+. +++.||+|++.... ....+.+.+|++++++++||||+++++++.. ....
T Consensus 6 ~~~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~---~~~~ 82 (319)
T 4euu_A 6 TSNHLWLLSDILGQGATANVFRGRHKKTGDLFAIKVFNNISFLRPVDVQMREFEVLKKLNHKNIVKLFAIEEE---TTTR 82 (319)
T ss_dssp CSSEEEEEEEEEEECSSEEEEEEEETTTCCEEEEEEECGGGGGSCHHHHHHHHHHHHHCCCTTBCCEEEEEEC---TTTC
T ss_pred CCCCCEEEEEEecCCCCeEEEEEEECCCCcEEEEEEeccccccchHHHHHHHHHHHHhcCCCCcceEEEEeec---CCCc
Confidence 44678999999999999999999966 69999999987543 3345777899999999999999999998643 2344
Q ss_pred eEEEEEecCCCCChhhhccCCCCCcccccccCHHHHHHHHHHHHHHHHHHHhcCCCCeeecCCCCCCEEe----CCCCce
Q 005045 464 FKALVFEFMSNGNLDQWLHPSPAEHYQFKKLSVIQRLNIAIDVASALDYLHHHCDTPIAHCDLKPSNVLL----DKDMTA 539 (717)
Q Consensus 464 ~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~dlkp~NIll----~~~~~~ 539 (717)
..++||||+++++|.+++..... ...+++..++.++.||+.||+|||+. +|+||||||+||++ +.++.+
T Consensus 83 ~~~lv~e~~~~~~L~~~l~~~~~----~~~~~~~~~~~i~~qi~~~L~~LH~~---~ivH~Dlkp~NIll~~~~~~~~~~ 155 (319)
T 4euu_A 83 HKVLIMEFCPCGSLYTVLEEPSN----AYGLPESEFLIVLRDVVGGMNHLREN---GIVHRNIKPGNIMRVIGEDGQSVY 155 (319)
T ss_dssp CEEEEEECCTTCBHHHHHHSGGG----TTCCCHHHHHHHHHHHHHHHHHHHHT---TEECSCCSGGGEEEEECTTSCEEE
T ss_pred eEEEEEeCCCCCCHHHHHHHhcc----ccCCCHHHHHHHHHHHHHHHHHHHHC---CEecCCCCHHHEEEeccCCCCceE
Confidence 78999999999999999976421 13389999999999999999999998 99999999999999 778899
Q ss_pred EEeeeccchhcccccCCCCCCcceeecccccccccCCCccC---------CCCCcccchhhHHHHHHHHHhCCCCCCCCC
Q 005045 540 HVGDFGLAKFLFEISDNPSKNQTVSIGLKGSIGYIPPEHMN---------GQVSILGDIYSYGILLLEMFTGKRPTGDMF 610 (717)
Q Consensus 540 kl~Dfg~~~~~~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~---------~~~~~~sDvwslG~vl~elltg~~p~~~~~ 610 (717)
||+|||.+...... .......||+.|+|||++. +.++.++|||||||++|||++|..||....
T Consensus 156 kL~Dfg~a~~~~~~--------~~~~~~~gt~~y~aPE~~~~~~~~~~~~~~~~~~~DiwslG~il~el~~g~~pf~~~~ 227 (319)
T 4euu_A 156 KLTDFGAARELEDD--------EQFVSLYGTEEYLHPDMYERAVLRKDHQKKYGATVDLWSIGVTFYHAATGSLPFRPFE 227 (319)
T ss_dssp EECCCTTCEECCTT--------CCBCCCCSCGGGCCHHHHHHHTSCCCCCCCBCTTHHHHHHHHHHHHHHHSSCSEECTT
T ss_pred EEccCCCceecCCC--------CceeecccCCCccCHHHhhhccccccccCCCCcHHHHHHHHHHHHHHHhCCCCCCCCC
Confidence 99999999865211 1122356899999999863 468999999999999999999999997543
Q ss_pred CCch--hhhHHHHhcCChh-hhhhcCCCCCCCCCCcHHHHHHHHHHHHHHhhhhhhhcchhhhHHHHHHHHHHhhccCCC
Q 005045 611 KDDF--SIHMFVSMALPDH-VMDILDPSMPLDEENDEEQIEEVIEEKEMMIHIDLEVNTKNKLEECFVSVLRIGLMCSTT 687 (717)
Q Consensus 611 ~~~~--~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~cl~~ 687 (717)
.... ..........|.. +..+.... .....+.. ............+..+.+++.+||++
T Consensus 228 ~~~~~~~~~~~~~~~~p~~~~~~~~~~~-~~~~~~~~-----------------~~~~~~~~~~~~~~~l~~ll~~~L~~ 289 (319)
T 4euu_A 228 GPRRNKEVMYKIITGKPSGAISGVQKAE-NGPIDWSG-----------------DMPVSCSLSRGLQVLLTPVLANILEA 289 (319)
T ss_dssp CGGGCHHHHHHHHHHCCTTCCEEEECST-TCCEEEES-----------------SCCTTCSSCHHHHHHHHHHHHHHSCC
T ss_pred ccchhHHHHHHHhcCCCcccchhhhccc-CCccccCc-----------------cCCcccccchhHHHHhHHHHHHhccC
Confidence 3221 1111111112211 11111000 00000000 00000112345577889999999999
Q ss_pred CcCCCCCHHHHHHHHHHH
Q 005045 688 SPRERIAMNVVVNNLKTI 705 (717)
Q Consensus 688 ~p~~Rps~~eil~~l~~i 705 (717)
||++|||++|+++.....
T Consensus 290 dP~~R~s~~ell~h~~d~ 307 (319)
T 4euu_A 290 DQEKCWGFDQFFAETSDI 307 (319)
T ss_dssp CTTTSCCHHHHHHHHHHH
T ss_pred ChhhhccHHHhhhccHHH
Confidence 999999999999887643
No 91
>1rjb_A FL cytokine receptor; kinase, structure, autoinhibition, juxtamembrane domain, transferase; 2.10A {Homo sapiens} SCOP: d.144.1.7
Probab=100.00 E-value=2.2e-39 Score=341.29 Aligned_cols=279 Identities=24% Similarity=0.359 Sum_probs=207.8
Q ss_pred cccccccccccccccCcccccceEEEEe------CCCchhhhHHhHhh-hhhHHHHHHHHHHHHhcC-CCCceeEEEEee
Q 005045 383 DISKSTDNFSKENLIGTGSFGSVYKGTL------GDGTIVAIKVLKLQ-QQGALKSFIDECNALKST-RHRNILRVITAC 454 (717)
Q Consensus 383 ~~~~~~~~y~~~~~ig~g~~g~v~~~~~------~~~~~vavK~~~~~-~~~~~~~~~~e~~~l~~l-~h~ni~~~~~~~ 454 (717)
++....++|++.+.||+|+||.||+|.+ .+++.||+|++... .....+.+.+|+++++++ .||||+++++++
T Consensus 39 ~~~~~~~~y~~~~~lG~G~~g~V~~~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~~hp~iv~~~~~~ 118 (344)
T 1rjb_A 39 KWEFPRENLEFGKVLGSGAFGKVMNATAYGISKTGVSIQVAVKMLKEKADSSEREALMSELKMMTQLGSHENIVNLLGAC 118 (344)
T ss_dssp GGBCCGGGEEEEEEEEECSSEEEEEEEEESCSSSSCEEEEEEEEECC------CHHHHHHHHHHHHHCCCTTBCCEEEEE
T ss_pred CcccCHHHceeeeeecCCCCceeEEeeeeccccCCcceEEEEEecccccCHHHHHHHHHHHHHHHhhcCCCCeeeEEEEE
Confidence 3556678999999999999999999995 24667999998743 233457889999999999 999999999995
Q ss_pred ccccCCCCceEEEEEecCCCCChhhhccCCCCCc----------------ccccccCHHHHHHHHHHHHHHHHHHHhcCC
Q 005045 455 SSVDLEGNDFKALVFEFMSNGNLDQWLHPSPAEH----------------YQFKKLSVIQRLNIAIDVASALDYLHHHCD 518 (717)
Q Consensus 455 ~~~~~~~~~~~~lv~e~~~~~~L~~~l~~~~~~~----------------~~~~~~~~~~~~~i~~~i~~~l~~LH~~~~ 518 (717)
. ..+..++||||+++++|.+++....... .....+++..+..++.||+.||+|||+.
T Consensus 119 ~-----~~~~~~lv~e~~~~g~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~~qi~~aL~~LH~~-- 191 (344)
T 1rjb_A 119 T-----LSGPIYLIFEYCCYGDLLNYLRSKREKFSEDEIEYENQKRLEEEEDLNVLTFEDLLCFAYQVAKGMEFLEFK-- 191 (344)
T ss_dssp C-----SSSSCEEEEECCTTCBHHHHHHTTTTCC---------------------CCHHHHHHHHHHHHHHHHHHHHT--
T ss_pred e-----eCCccEEEEecCCCCcHHHHHhhccccccccccchhhhcccccccccccCCHHHHHHHHHHHHHHHHHHHhC--
Confidence 4 4457899999999999999997653210 0113479999999999999999999998
Q ss_pred CCeeecCCCCCCEEeCCCCceEEeeeccchhcccccCCCCCCcceeecccccccccCCCcc-CCCCCcccchhhHHHHHH
Q 005045 519 TPIAHCDLKPSNVLLDKDMTAHVGDFGLAKFLFEISDNPSKNQTVSIGLKGSIGYIPPEHM-NGQVSILGDIYSYGILLL 597 (717)
Q Consensus 519 ~~ivH~dlkp~NIll~~~~~~kl~Dfg~~~~~~~~~~~~~~~~~~~~~~~~~~~y~aPE~~-~~~~~~~sDvwslG~vl~ 597 (717)
||+||||||+||+++.++.+||+|||.+...... ..........+++.|+|||++ .+.++.++|||||||++|
T Consensus 192 -~ivH~Dikp~NIll~~~~~~kL~Dfg~~~~~~~~-----~~~~~~~~~~~t~~y~aPE~~~~~~~~~~~Di~slG~il~ 265 (344)
T 1rjb_A 192 -SCVHRDLAARNVLVTHGKVVKICDFGLARDIMSD-----SNYVVRGNARLPVKWMAPESLFEGIYTIKSDVWSYGILLW 265 (344)
T ss_dssp -TEEETTCSGGGEEEETTTEEEECCCGGGSCGGGC-----TTSEEETTEEECGGGCCHHHHHHCCCCHHHHHHHHHHHHH
T ss_pred -CcccCCCChhhEEEcCCCcEEeCCCccCcccccC-----ccceeccCccCccCccCHHHhccCCCChhHhHHHHHHHHH
Confidence 9999999999999999999999999999865321 112233345578899999996 456899999999999999
Q ss_pred HHHh-CCCCCCCCCCCchhhhHHHHhcCChhhhhhcCCCCCCCCCCcHHHHHHHHHHHHHHhhhhhhhcchhhhHHHHHH
Q 005045 598 EMFT-GKRPTGDMFKDDFSIHMFVSMALPDHVMDILDPSMPLDEENDEEQIEEVIEEKEMMIHIDLEVNTKNKLEECFVS 676 (717)
Q Consensus 598 ellt-g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 676 (717)
+|++ |..||........ ........ ..... +..++..
T Consensus 266 el~t~g~~p~~~~~~~~~-~~~~~~~~--------~~~~~---------------------------------~~~~~~~ 303 (344)
T 1rjb_A 266 EIFSLGVNPYPGIPVDAN-FYKLIQNG--------FKMDQ---------------------------------PFYATEE 303 (344)
T ss_dssp HHTTTSCCSSTTCCCSHH-HHHHHHTT--------CCCCC---------------------------------CTTCCHH
T ss_pred HHHcCCCCCcccCCcHHH-HHHHHhcC--------CCCCC---------------------------------CCCCCHH
Confidence 9998 9999976533221 11111110 00000 1112556
Q ss_pred HHHHhhccCCCCcCCCCCHHHHHHHHHHHHHHHHhhhhcC
Q 005045 677 VLRIGLMCSTTSPRERIAMNVVVNNLKTIRNCFLEFKKRN 716 (717)
Q Consensus 677 l~~li~~cl~~~p~~Rps~~eil~~l~~i~~~~~~~~~~~ 716 (717)
+.+++.+||+.+|++|||+.|+++.|+.+.....+...+|
T Consensus 304 l~~li~~~l~~dp~~Rps~~~l~~~l~~~~~~~~~~~~~~ 343 (344)
T 1rjb_A 304 IYIIMQSCWAFDSRKRPSFPNLTSFLGCQLADAEEAMYQN 343 (344)
T ss_dssp HHHHHHHHTCSSGGGSCCHHHHHHHHHHHC----------
T ss_pred HHHHHHHHcCCCchhCcCHHHHHHHHHHHHHHHHHHHhcc
Confidence 8899999999999999999999999999988776655443
No 92
>1qcf_A Haematopoetic cell kinase (HCK); tyrosine kinase-inhibitor complex, DOWN-regulated kinase, ordered activation loop; HET: PTR PP1; 2.00A {Homo sapiens} SCOP: b.34.2.1 d.93.1.1 d.144.1.7 PDB: 2c0i_A* 2c0o_A* 2c0t_A* 1ad5_A* 2hck_A* 3nhn_A 3hck_A 1bu1_A 3rea_B 3rbb_B
Probab=100.00 E-value=5.6e-40 Score=358.30 Aligned_cols=265 Identities=24% Similarity=0.451 Sum_probs=212.1
Q ss_pred CCcccccccccccccccccCcccccceEEEEeCCCchhhhHHhHhhhhhHHHHHHHHHHHHhcCCCCceeEEEEeecccc
Q 005045 379 MSYSDISKSTDNFSKENLIGTGSFGSVYKGTLGDGTIVAIKVLKLQQQGALKSFIDECNALKSTRHRNILRVITACSSVD 458 (717)
Q Consensus 379 ~s~~~~~~~~~~y~~~~~ig~g~~g~v~~~~~~~~~~vavK~~~~~~~~~~~~~~~e~~~l~~l~h~ni~~~~~~~~~~~ 458 (717)
+...++....++|++.+.||+|+||.||+|.+++++.||||.+.... ...+.+.+|++++++++||||+++++++.
T Consensus 178 ~~~~~~~i~~~~~~~~~~lG~G~fg~V~~~~~~~~~~vavK~~~~~~-~~~~~~~~E~~~l~~l~h~~iv~l~~~~~--- 253 (454)
T 1qcf_A 178 WEKDAWEIPRESLKLEKKLGAGQFGEVWMATYNKHTKVAVKTMKPGS-MSVEAFLAEANVMKTLQHDKLVKLHAVVT--- 253 (454)
T ss_dssp CCTTCSBCCGGGEEEEEEEECCSSEEEEEEEETTTEEEEEEEECTTS-BCHHHHHHHHHHHTTCCCTTBCCEEEEEC---
T ss_pred ccccceeechHHeEEEEEcccCCceEEEEEEECCccEEEEEEecCCC-ccHHHHHHHHHHHhhCCCCCEeeEEEEEe---
Confidence 44566777889999999999999999999998888899999987543 23578999999999999999999999863
Q ss_pred CCCCceEEEEEecCCCCChhhhccCCCCCcccccccCHHHHHHHHHHHHHHHHHHHhcCCCCeeecCCCCCCEEeCCCCc
Q 005045 459 LEGNDFKALVFEFMSNGNLDQWLHPSPAEHYQFKKLSVIQRLNIAIDVASALDYLHHHCDTPIAHCDLKPSNVLLDKDMT 538 (717)
Q Consensus 459 ~~~~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~dlkp~NIll~~~~~ 538 (717)
.+..++||||+++|+|.+++.... ...+++..+..++.||+.||+|||+. +|+||||||+||+++.++.
T Consensus 254 ---~~~~~lv~e~~~~g~L~~~l~~~~-----~~~~~~~~~~~~~~qi~~~l~~LH~~---~ivHrDlkp~Nill~~~~~ 322 (454)
T 1qcf_A 254 ---KEPIYIITEFMAKGSLLDFLKSDE-----GSKQPLPKLIDFSAQIAEGMAFIEQR---NYIHRDLRAANILVSASLV 322 (454)
T ss_dssp ---SSSCEEEECCCTTCBHHHHHHSHH-----HHTCCHHHHHHHHHHHHHHHHHHHHT---TCCCSSCSGGGEEECTTCC
T ss_pred ---CCccEEEEeecCCCcHHHHHHhcc-----CCCCCHHHHHHHHHHHHHHHHHHHhC---CccCCCCCHHHEEECCCCc
Confidence 346899999999999999997541 13688999999999999999999998 9999999999999999999
Q ss_pred eEEeeeccchhcccccCCCCCCcceeecccccccccCCCccC-CCCCcccchhhHHHHHHHHHh-CCCCCCCCCCCchhh
Q 005045 539 AHVGDFGLAKFLFEISDNPSKNQTVSIGLKGSIGYIPPEHMN-GQVSILGDIYSYGILLLEMFT-GKRPTGDMFKDDFSI 616 (717)
Q Consensus 539 ~kl~Dfg~~~~~~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~-~~~~~~sDvwslG~vl~ellt-g~~p~~~~~~~~~~~ 616 (717)
+||+|||+++...... ........++..|+|||++. +.++.++|||||||++|||++ |..||......+ .
T Consensus 323 ~kl~DFG~a~~~~~~~------~~~~~~~~~~~~y~aPE~~~~~~~~~~~DvwslG~~l~el~t~g~~P~~~~~~~~--~ 394 (454)
T 1qcf_A 323 CKIADFGLARVIEDNE------YTAREGAKFPIKWTAPEAINFGSFTIKSDVWSFGILLMEIVTYGRIPYPGMSNPE--V 394 (454)
T ss_dssp EEECSTTGGGGBCCHH------HHTTCSSSSCGGGSCHHHHHHCCCCHHHHHHHHHHHHHHHHTTSCCSSTTCCHHH--H
T ss_pred EEEeeCCCceEcCCCc------eeccCCCcccccccCHHHhccCCCCcHHHHHhHHHHHHHHHhCCCCCCCCCCHHH--H
Confidence 9999999998652111 11112234677899999965 568999999999999999999 999997542211 1
Q ss_pred hHHHHhcCChhhhhhcCCCCCCCCCCcHHHHHHHHHHHHHHhhhhhhhcchhhhHHHHHHHHHHhhccCCCCcCCCCCHH
Q 005045 617 HMFVSMALPDHVMDILDPSMPLDEENDEEQIEEVIEEKEMMIHIDLEVNTKNKLEECFVSVLRIGLMCSTTSPRERIAMN 696 (717)
Q Consensus 617 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~cl~~~p~~Rps~~ 696 (717)
...+... . .. +.+..++..+.+++.+||+.+|++|||++
T Consensus 395 ~~~i~~~--------~--~~-------------------------------~~~~~~~~~l~~li~~cl~~dp~~RPt~~ 433 (454)
T 1qcf_A 395 IRALERG--------Y--RM-------------------------------PRPENCPEELYNIMMRCWKNRPEERPTFE 433 (454)
T ss_dssp HHHHHHT--------C--CC-------------------------------CCCTTSCHHHHHHHHHHTCSSGGGSCCHH
T ss_pred HHHHHcC--------C--CC-------------------------------CCCCCCCHHHHHHHHHHccCChhHCcCHH
Confidence 1111100 0 00 01223466789999999999999999999
Q ss_pred HHHHHHHHHHH
Q 005045 697 VVVNNLKTIRN 707 (717)
Q Consensus 697 eil~~l~~i~~ 707 (717)
+|++.|+.+..
T Consensus 434 ~i~~~L~~~~~ 444 (454)
T 1qcf_A 434 YIQSVLDDFYT 444 (454)
T ss_dssp HHHHHHHTSSS
T ss_pred HHHHHHHHHHh
Confidence 99999998754
No 93
>1t4h_A Serine/threonine-protein kinase WNK1; protein serine/threonine kinase, transferase; 1.80A {Rattus norvegicus} PDB: 3fpq_A
Probab=100.00 E-value=6.5e-39 Score=329.17 Aligned_cols=254 Identities=25% Similarity=0.349 Sum_probs=202.4
Q ss_pred ccccccccccccCcccccceEEEEeC-CCchhhhHHhHhh--hhhHHHHHHHHHHHHhcCCCCceeEEEEeeccccCCCC
Q 005045 386 KSTDNFSKENLIGTGSFGSVYKGTLG-DGTIVAIKVLKLQ--QQGALKSFIDECNALKSTRHRNILRVITACSSVDLEGN 462 (717)
Q Consensus 386 ~~~~~y~~~~~ig~g~~g~v~~~~~~-~~~~vavK~~~~~--~~~~~~~~~~e~~~l~~l~h~ni~~~~~~~~~~~~~~~ 462 (717)
...+.|++.+.||+|+||.||+|.+. +++.||+|.+... .....+.+.+|+.++++++||||+++++++... ....
T Consensus 23 ~~~~~~~~~~~lg~G~~g~Vy~~~~~~~~~~va~k~~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~-~~~~ 101 (290)
T 1t4h_A 23 NDGRFLKFDIEIGRGSFKTVYKGLDTETTVEVAWCELQDRKLTKSERQRFKEEAEMLKGLQHPNIVRFYDSWEST-VKGK 101 (290)
T ss_dssp TTSCEEEEEEEEEECSSEEEEEEEETTTCCEEEEEEEEGGGSCHHHHHHHHHHHHHHTTCCCTTBCCEEEEEEEE-SSSC
T ss_pred cCceeEEeeeeccCCCCeEEEEeEecCCceEEEEEEecchhhCHHHHHHHHHHHHHHHhCCCCCeeeeeeeeccc-cCCC
Confidence 34556899999999999999999965 7888999988644 234567889999999999999999999986543 2345
Q ss_pred ceEEEEEecCCCCChhhhccCCCCCcccccccCHHHHHHHHHHHHHHHHHHHhcCCCC--eeecCCCCCCEEeC-CCCce
Q 005045 463 DFKALVFEFMSNGNLDQWLHPSPAEHYQFKKLSVIQRLNIAIDVASALDYLHHHCDTP--IAHCDLKPSNVLLD-KDMTA 539 (717)
Q Consensus 463 ~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~i~~~i~~~l~~LH~~~~~~--ivH~dlkp~NIll~-~~~~~ 539 (717)
...++||||+++++|.+++... ..+++..+..++.||+.||+|||+. + |+||||||+||+++ .++.+
T Consensus 102 ~~~~lv~e~~~~~~L~~~l~~~-------~~~~~~~~~~~~~qi~~~l~~lH~~---~~~i~H~dikp~Nil~~~~~~~~ 171 (290)
T 1t4h_A 102 KCIVLVTELMTSGTLKTYLKRF-------KVMKIKVLRSWCRQILKGLQFLHTR---TPPIIHRDLKCDNIFITGPTGSV 171 (290)
T ss_dssp EEEEEEEECCCSCBHHHHHHHH-------SSCCHHHHHHHHHHHHHHHHHHHTS---SSCCCCSCCCGGGEEESSTTSCE
T ss_pred ceEEEEEEecCCCCHHHHHHHc-------cCCCHHHHHHHHHHHHHHHHHHHcC---CCCEEECCCCHHHEEEECCCCCE
Confidence 6789999999999999999743 5689999999999999999999997 7 99999999999998 78999
Q ss_pred EEeeeccchhcccccCCCCCCcceeecccccccccCCCccCCCCCcccchhhHHHHHHHHHhCCCCCCCCCCCchhhhHH
Q 005045 540 HVGDFGLAKFLFEISDNPSKNQTVSIGLKGSIGYIPPEHMNGQVSILGDIYSYGILLLEMFTGKRPTGDMFKDDFSIHMF 619 (717)
Q Consensus 540 kl~Dfg~~~~~~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~sDvwslG~vl~elltg~~p~~~~~~~~~~~~~~ 619 (717)
||+|||.+.... ........|++.|+|||++.+.++.++|||||||++|+|++|..||.............
T Consensus 172 kl~Dfg~~~~~~---------~~~~~~~~~t~~y~aPE~~~~~~~~~~Di~slG~~l~~l~~g~~pf~~~~~~~~~~~~~ 242 (290)
T 1t4h_A 172 KIGDLGLATLKR---------ASFAKAVIGTPEFMAPEMYEEKYDESVDVYAFGMCMLEMATSEYPYSECQNAAQIYRRV 242 (290)
T ss_dssp EECCTTGGGGCC---------TTSBEESCSSCCCCCGGGGGTCCCTHHHHHHHHHHHHHHHHSSCTTTTCSSHHHHHHHH
T ss_pred EEeeCCCccccc---------ccccccccCCcCcCCHHHHhccCCCcchHHHHHHHHHHHHhCCCCCCCcCcHHHHHHHH
Confidence 999999997541 11223456899999999998889999999999999999999999997643222111111
Q ss_pred HHhcCChhhhhhcCCCCCCCCCCcHHHHHHHHHHHHHHhhhhhhhcchhhhHHHHHHHHHHhhccCCCCcCCCCCHHHHH
Q 005045 620 VSMALPDHVMDILDPSMPLDEENDEEQIEEVIEEKEMMIHIDLEVNTKNKLEECFVSVLRIGLMCSTTSPRERIAMNVVV 699 (717)
Q Consensus 620 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~cl~~~p~~Rps~~eil 699 (717)
.....+.. .+..++..+.+++.+||+.+|++|||++|++
T Consensus 243 ~~~~~~~~-----------------------------------------~~~~~~~~l~~li~~~l~~dp~~Rps~~ell 281 (290)
T 1t4h_A 243 TSGVKPAS-----------------------------------------FDKVAIPEVKEIIEGCIRQNKDERYSIKDLL 281 (290)
T ss_dssp TTTCCCGG-----------------------------------------GGGCCCHHHHHHHHHHSCSSGGGSCCHHHHH
T ss_pred hccCCccc-----------------------------------------cCCCCCHHHHHHHHHHccCChhhCCCHHHHh
Confidence 10000000 0111134678999999999999999999998
Q ss_pred H
Q 005045 700 N 700 (717)
Q Consensus 700 ~ 700 (717)
+
T Consensus 282 ~ 282 (290)
T 1t4h_A 282 N 282 (290)
T ss_dssp T
T ss_pred h
Confidence 6
No 94
>2eva_A TAK1 kinase - TAB1 chimera fusion protein; transferase/transferase activator complex; HET: ADN; 2.00A {Homo sapiens}
Probab=100.00 E-value=3.9e-39 Score=333.34 Aligned_cols=260 Identities=27% Similarity=0.415 Sum_probs=201.0
Q ss_pred cccccccccccCcccccceEEEEeCCCchhhhHHhHhhhhhHHHHHHHHHHHHhcCCCCceeEEEEeeccccCCCCceEE
Q 005045 387 STDNFSKENLIGTGSFGSVYKGTLGDGTIVAIKVLKLQQQGALKSFIDECNALKSTRHRNILRVITACSSVDLEGNDFKA 466 (717)
Q Consensus 387 ~~~~y~~~~~ig~g~~g~v~~~~~~~~~~vavK~~~~~~~~~~~~~~~e~~~l~~l~h~ni~~~~~~~~~~~~~~~~~~~ 466 (717)
..++|++.+.||+|+||.||+|++. ++.||+|.+... ...+.+.+|++++++++||||+++++++. +..+
T Consensus 6 ~~~~~~~~~~lg~G~~g~V~~~~~~-~~~vavK~~~~~--~~~~~~~~E~~~l~~l~hp~iv~~~~~~~-------~~~~ 75 (307)
T 2eva_A 6 DYKEIEVEEVVGRGAFGVVCKAKWR-AKDVAIKQIESE--SERKAFIVELRQLSRVNHPNIVKLYGACL-------NPVC 75 (307)
T ss_dssp CGGGEEEEEEEECCSSSEEEEEEET-TEEEEEEECSST--THHHHHHHHHHHHHHCCCTTBCCEEEBCT-------TTTE
T ss_pred CHhHeeeeeEeecCCCceEEEEEEC-CeeEEEEEecCh--hHHHHHHHHHHHHhcCCCCCcCeEEEEEc-------CCcE
Confidence 4578999999999999999999975 788999998643 34577899999999999999999999853 2468
Q ss_pred EEEecCCCCChhhhccCCCCCcccccccCHHHHHHHHHHHHHHHHHHHhcCCCCeeecCCCCCCEEeCCCCc-eEEeeec
Q 005045 467 LVFEFMSNGNLDQWLHPSPAEHYQFKKLSVIQRLNIAIDVASALDYLHHHCDTPIAHCDLKPSNVLLDKDMT-AHVGDFG 545 (717)
Q Consensus 467 lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~dlkp~NIll~~~~~-~kl~Dfg 545 (717)
+||||+++++|.+++.... ....+++..++.++.|+++||+|||+.+.++|+||||||+||+++.++. +||+|||
T Consensus 76 lv~e~~~~~~L~~~l~~~~----~~~~~~~~~~~~~~~qi~~~l~~LH~~~~~~ivH~dlkp~NIll~~~~~~~kl~Dfg 151 (307)
T 2eva_A 76 LVMEYAEGGSLYNVLHGAE----PLPYYTAAHAMSWCLQCSQGVAYLHSMQPKALIHRDLKPPNLLLVAGGTVLKICDFG 151 (307)
T ss_dssp EEEECCTTCBHHHHHHCSS----SEECCCHHHHHHHHHHHHHHHHHHHTCSSSCCCCCCCSGGGEEEETTTTEEEECCCC
T ss_pred EEEEcCCCCCHHHHHhccC----CCCccCHHHHHHHHHHHHHHHHHHHhCCCCCeecCCCChhHEEEeCCCCEEEEcccc
Confidence 9999999999999997653 1245789999999999999999999943338999999999999998886 7999999
Q ss_pred cchhcccccCCCCCCcceeecccccccccCCCccCC-CCCcccchhhHHHHHHHHHhCCCCCCCCCCCchhhhHHHHhcC
Q 005045 546 LAKFLFEISDNPSKNQTVSIGLKGSIGYIPPEHMNG-QVSILGDIYSYGILLLEMFTGKRPTGDMFKDDFSIHMFVSMAL 624 (717)
Q Consensus 546 ~~~~~~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~-~~~~~sDvwslG~vl~elltg~~p~~~~~~~~~~~~~~~~~~~ 624 (717)
.+..... ......|++.|+|||++.+ .++.++|||||||++|+|++|..||..................
T Consensus 152 ~~~~~~~----------~~~~~~gt~~y~aPE~~~~~~~~~~~Di~slG~il~el~~g~~p~~~~~~~~~~~~~~~~~~~ 221 (307)
T 2eva_A 152 TACDIQT----------HMTNNKGSAAWMAPEVFEGSNYSEKCDVFSWGIILWEVITRRKPFDEIGGPAFRIMWAVHNGT 221 (307)
T ss_dssp C----------------------CCTTSSCHHHHTCCCCCTHHHHHHHHHHHHHHHHTCCTTTTTCSSHHHHHHHHHTTC
T ss_pred ccccccc----------ccccCCCCCceEChhhhCCCCCCcHHHHHHHHHHHHHHHHCCCCchhhCccHHHHHHHHhcCC
Confidence 9875421 1123458999999999765 5899999999999999999999999765433222211111100
Q ss_pred ChhhhhhcCCCCCCCCCCcHHHHHHHHHHHHHHhhhhhhhcchhhhHHHHHHHHHHhhccCCCCcCCCCCHHHHHHHHHH
Q 005045 625 PDHVMDILDPSMPLDEENDEEQIEEVIEEKEMMIHIDLEVNTKNKLEECFVSVLRIGLMCSTTSPRERIAMNVVVNNLKT 704 (717)
Q Consensus 625 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~cl~~~p~~Rps~~eil~~l~~ 704 (717)
.+. ....++..+.+++.+||+.+|++|||++|+++.|+.
T Consensus 222 --------~~~---------------------------------~~~~~~~~l~~li~~~l~~dp~~Rps~~ell~~L~~ 260 (307)
T 2eva_A 222 --------RPP---------------------------------LIKNLPKPIESLMTRCWSKDPSQRPSMEEIVKIMTH 260 (307)
T ss_dssp --------CCC---------------------------------CBTTCCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHH
T ss_pred --------CCC---------------------------------cccccCHHHHHHHHHHhcCChhhCcCHHHHHHHHHH
Confidence 000 011225567899999999999999999999999999
Q ss_pred HHHHHHh
Q 005045 705 IRNCFLE 711 (717)
Q Consensus 705 i~~~~~~ 711 (717)
+.+.+..
T Consensus 261 ~~~~~~~ 267 (307)
T 2eva_A 261 LMRYFPG 267 (307)
T ss_dssp HGGGCCC
T ss_pred HHHhccC
Confidence 9866543
No 95
>2y0a_A Death-associated protein kinase 1; transferase, calmodulin, esprit; HET: MES; 2.60A {Homo sapiens}
Probab=100.00 E-value=5e-39 Score=335.32 Aligned_cols=252 Identities=21% Similarity=0.296 Sum_probs=200.0
Q ss_pred ccccccccccccCcccccceEEEEeC-CCchhhhHHhHhhhh------hHHHHHHHHHHHHhcCCCCceeEEEEeecccc
Q 005045 386 KSTDNFSKENLIGTGSFGSVYKGTLG-DGTIVAIKVLKLQQQ------GALKSFIDECNALKSTRHRNILRVITACSSVD 458 (717)
Q Consensus 386 ~~~~~y~~~~~ig~g~~g~v~~~~~~-~~~~vavK~~~~~~~------~~~~~~~~e~~~l~~l~h~ni~~~~~~~~~~~ 458 (717)
...++|++.+.||+|+||.||+|.++ +|+.||+|++..... ...+.+.+|++++++++||||+++++++.
T Consensus 8 ~~~~~y~~~~~lG~G~~g~V~~~~~~~~~~~~avK~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~hp~iv~~~~~~~--- 84 (326)
T 2y0a_A 8 NVDDYYDTGEELGSGQFAVVKKCREKSTGLQYAAKFIKKRRTKSSRRGVSREDIEREVSILKEIQHPNVITLHEVYE--- 84 (326)
T ss_dssp CHHHHEEEEEEEECCSSEEEEEEEETTTCCEEEEEEEEBCCSTTCSSSBCHHHHHHHHHHHHHCCCTTBCCEEEEEE---
T ss_pred CcccceEeceEEeeCCCeEEEEEEECCCCcEEEEEEEEccccccccchhhHHHHHHHHHHHHhCCCCCCCcEEEEEE---
Confidence 34578999999999999999999965 789999999864421 13577889999999999999999999953
Q ss_pred CCCCceEEEEEecCCCCChhhhccCCCCCcccccccCHHHHHHHHHHHHHHHHHHHhcCCCCeeecCCCCCCEEeCCCC-
Q 005045 459 LEGNDFKALVFEFMSNGNLDQWLHPSPAEHYQFKKLSVIQRLNIAIDVASALDYLHHHCDTPIAHCDLKPSNVLLDKDM- 537 (717)
Q Consensus 459 ~~~~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~dlkp~NIll~~~~- 537 (717)
.....++||||+++++|.+++... ..+++..+..++.||+.||+|||+. +|+||||||+||+++.++
T Consensus 85 --~~~~~~lv~e~~~~~~L~~~l~~~-------~~~~~~~~~~i~~qi~~al~~lH~~---~ivH~Dlkp~NIll~~~~~ 152 (326)
T 2y0a_A 85 --NKTDVILILELVAGGELFDFLAEK-------ESLTEEEATEFLKQILNGVYYLHSL---QIAHFDLKPENIMLLDRNV 152 (326)
T ss_dssp --CSSEEEEEEECCCSCBHHHHHTTS-------SCCBHHHHHHHHHHHHHHHHHHHHT---TEECCCCCGGGEEESCSSS
T ss_pred --eCCEEEEEEEcCCCCCHHHHHHhc-------CCcCHHHHHHHHHHHHHHHHHHHHC---CeEcCCCCHHHEEEecCCC
Confidence 455899999999999999999754 5689999999999999999999998 999999999999999877
Q ss_pred ---ceEEeeeccchhcccccCCCCCCcceeecccccccccCCCccCC-CCCcccchhhHHHHHHHHHhCCCCCCCCCCCc
Q 005045 538 ---TAHVGDFGLAKFLFEISDNPSKNQTVSIGLKGSIGYIPPEHMNG-QVSILGDIYSYGILLLEMFTGKRPTGDMFKDD 613 (717)
Q Consensus 538 ---~~kl~Dfg~~~~~~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~-~~~~~sDvwslG~vl~elltg~~p~~~~~~~~ 613 (717)
.+||+|||.+...... .......||+.|+|||++.+ .++.++|||||||++|+|++|..||.......
T Consensus 153 ~~~~~kl~Dfg~a~~~~~~--------~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~~ll~g~~pf~~~~~~~ 224 (326)
T 2y0a_A 153 PKPRIKIIDFGLAHKIDFG--------NEFKNIFGTPEFVAPEIVNYEPLGLEADMWSIGVITYILLSGASPFLGDTKQE 224 (326)
T ss_dssp SSCCEEECCCTTCEECCTT--------SCCCCCCSCTTTCCHHHHTTCCCCTHHHHHHHHHHHHHHHHSCCSSCCSSHHH
T ss_pred CCCCEEEEECCCCeECCCC--------CccccccCCcCcCCceeecCCCCCcHHHHHHHHHHHHHHHHCcCCCCCCCHHH
Confidence 8999999999865211 11223568999999999765 58999999999999999999999996532111
Q ss_pred hhhhHHHHhcCChhhhhhcCCCCCCCCCCcHHHHHHHHHHHHHHhhhhhhhcchhhhHHHHHHHHHHhhccCCCCcCCCC
Q 005045 614 FSIHMFVSMALPDHVMDILDPSMPLDEENDEEQIEEVIEEKEMMIHIDLEVNTKNKLEECFVSVLRIGLMCSTTSPRERI 693 (717)
Q Consensus 614 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~cl~~~p~~Rp 693 (717)
...... ....... ......++..+.+++.+||+.+|++||
T Consensus 225 --~~~~~~-----------~~~~~~~---------------------------~~~~~~~~~~~~~li~~~L~~dP~~Rp 264 (326)
T 2y0a_A 225 --TLANVS-----------AVNYEFE---------------------------DEYFSNTSALAKDFIRRLLVKDPKKRM 264 (326)
T ss_dssp --HHHHHH-----------HTCCCCC---------------------------HHHHTTSCHHHHHHHHHHSCSSGGGSC
T ss_pred --HHHHHH-----------hcCCCcC---------------------------ccccccCCHHHHHHHHHHccCChhhCC
Confidence 100000 0000000 001112255678999999999999999
Q ss_pred CHHHHHH
Q 005045 694 AMNVVVN 700 (717)
Q Consensus 694 s~~eil~ 700 (717)
|+.|+++
T Consensus 265 t~~e~l~ 271 (326)
T 2y0a_A 265 TIQDSLQ 271 (326)
T ss_dssp CHHHHHH
T ss_pred CHHHHhc
Confidence 9999996
No 96
>1fot_A TPK1 delta, CAMP-dependent protein kinase type 1; open conformation, transferase; HET: TPO; 2.80A {Saccharomyces cerevisiae} SCOP: d.144.1.7
Probab=100.00 E-value=3.5e-39 Score=334.39 Aligned_cols=245 Identities=29% Similarity=0.362 Sum_probs=198.7
Q ss_pred cccccccccccCcccccceEEEEeC-CCchhhhHHhHhhh---hhHHHHHHHHHHHHhcCCCCceeEEEEeeccccCCCC
Q 005045 387 STDNFSKENLIGTGSFGSVYKGTLG-DGTIVAIKVLKLQQ---QGALKSFIDECNALKSTRHRNILRVITACSSVDLEGN 462 (717)
Q Consensus 387 ~~~~y~~~~~ig~g~~g~v~~~~~~-~~~~vavK~~~~~~---~~~~~~~~~e~~~l~~l~h~ni~~~~~~~~~~~~~~~ 462 (717)
..++|++.+.||+|+||.||+|+.+ +|+.||+|++.... ....+.+.+|+.+++.++||||+++++++ .+.
T Consensus 4 ~~~~y~~~~~lG~G~~g~V~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~E~~~l~~l~hp~Iv~~~~~~-----~~~ 78 (318)
T 1fot_A 4 SLQDFQILRTLGTGSFGRVHLIRSRHNGRYYAMKVLKKEIVVRLKQVEHTNDERLMLSIVTHPFIIRMWGTF-----QDA 78 (318)
T ss_dssp CGGGEEEEEEEEECSSCEEEEEEETTTCCEEEEEEEEHHHHHHTTCHHHHHHHHHHHHSCCBTTBCCEEEEE-----ECS
T ss_pred ChHHcEEEEEEeeCCCEEEEEEEECCCCCEEEEEEEEHHHhhhhhHHHHHHHHHHHHhhCCCCCCceEeEEE-----EeC
Confidence 3578999999999999999999965 79999999986542 23456788999999999999999999995 445
Q ss_pred ceEEEEEecCCCCChhhhccCCCCCcccccccCHHHHHHHHHHHHHHHHHHHhcCCCCeeecCCCCCCEEeCCCCceEEe
Q 005045 463 DFKALVFEFMSNGNLDQWLHPSPAEHYQFKKLSVIQRLNIAIDVASALDYLHHHCDTPIAHCDLKPSNVLLDKDMTAHVG 542 (717)
Q Consensus 463 ~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~dlkp~NIll~~~~~~kl~ 542 (717)
...|+||||+++++|.+++... ..+++..+..++.||+.||+|||+. +|+||||||+||+++.+|.+||+
T Consensus 79 ~~~~lv~e~~~gg~L~~~l~~~-------~~~~~~~~~~~~~qi~~aL~~LH~~---~ivHrDlkp~NIll~~~g~~kL~ 148 (318)
T 1fot_A 79 QQIFMIMDYIEGGELFSLLRKS-------QRFPNPVAKFYAAEVCLALEYLHSK---DIIYRDLKPENILLDKNGHIKIT 148 (318)
T ss_dssp SEEEEEECCCCSCBHHHHHHHT-------SSCCHHHHHHHHHHHHHHHHHHHTT---TEECCCCCGGGEEECTTSCEEEC
T ss_pred CEEEEEEeCCCCCCHHHHHHHc-------CCCCHHHHHHHHHHHHHHHHHHHHC---CccccCCChheEEEcCCCCEEEe
Confidence 6899999999999999999754 5689999999999999999999997 99999999999999999999999
Q ss_pred eeccchhcccccCCCCCCcceeecccccccccCCCccCC-CCCcccchhhHHHHHHHHHhCCCCCCCCCCCchhhhHHHH
Q 005045 543 DFGLAKFLFEISDNPSKNQTVSIGLKGSIGYIPPEHMNG-QVSILGDIYSYGILLLEMFTGKRPTGDMFKDDFSIHMFVS 621 (717)
Q Consensus 543 Dfg~~~~~~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~-~~~~~sDvwslG~vl~elltg~~p~~~~~~~~~~~~~~~~ 621 (717)
|||.+..... ......||+.|+|||++.+ .++.++|||||||++|||++|..||...... ...
T Consensus 149 Dfg~a~~~~~----------~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~ell~g~~pf~~~~~~--~~~---- 212 (318)
T 1fot_A 149 DFGFAKYVPD----------VTYTLCGTPDYIAPEVVSTKPYNKSIDWWSFGILIYEMLAGYTPFYDSNTM--KTY---- 212 (318)
T ss_dssp CCSSCEECSS----------CBCCCCSCTTTCCHHHHTTCCBCTTHHHHHHHHHHHHHHHSSCTTCCSSHH--HHH----
T ss_pred ecCcceecCC----------ccccccCCccccCHhHhcCCCCCcccchhhhHHHHHHHHhCCCCCCCCCHH--HHH----
Confidence 9999986411 1223568999999999765 4899999999999999999999999653211 110
Q ss_pred hcCChhhhhhcCCCCCCCCCCcHHHHHHHHHHHHHHhhhhhhhcchhhhHHHHHHHHHHhhccCCCCcCCCC-----CHH
Q 005045 622 MALPDHVMDILDPSMPLDEENDEEQIEEVIEEKEMMIHIDLEVNTKNKLEECFVSVLRIGLMCSTTSPRERI-----AMN 696 (717)
Q Consensus 622 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~cl~~~p~~Rp-----s~~ 696 (717)
..+........ ...+..+.+++.+|++.+|++|| +++
T Consensus 213 -------~~i~~~~~~~p-------------------------------~~~~~~~~~li~~lL~~dp~~R~~~~~~~~~ 254 (318)
T 1fot_A 213 -------EKILNAELRFP-------------------------------PFFNEDVKDLLSRLITRDLSQRLGNLQNGTE 254 (318)
T ss_dssp -------HHHHHCCCCCC-------------------------------TTSCHHHHHHHHHHTCSCTTTCTTSSTTTTH
T ss_pred -------HHHHhCCCCCC-------------------------------CCCCHHHHHHHHHHhccCHHHcCCCcCCCHH
Confidence 11111111100 11145678899999999999999 888
Q ss_pred HHHH
Q 005045 697 VVVN 700 (717)
Q Consensus 697 eil~ 700 (717)
||++
T Consensus 255 ~i~~ 258 (318)
T 1fot_A 255 DVKN 258 (318)
T ss_dssp HHHT
T ss_pred HHhc
Confidence 8874
No 97
>2c30_A Serine/threonine-protein kinase PAK 6; CRIB domain, ATP-binding, transferase, nucleotide-binding; HET: SEP; 1.6A {Homo sapiens} PDB: 2f57_A* 2j0i_A* 2cdz_A* 2q0n_A* 2x4z_A* 2bva_A*
Probab=100.00 E-value=2.3e-39 Score=337.09 Aligned_cols=248 Identities=22% Similarity=0.291 Sum_probs=199.2
Q ss_pred ccccccccCcccccceEEEEeC-CCchhhhHHhHhhhhhHHHHHHHHHHHHhcCCCCceeEEEEeeccccCCCCceEEEE
Q 005045 390 NFSKENLIGTGSFGSVYKGTLG-DGTIVAIKVLKLQQQGALKSFIDECNALKSTRHRNILRVITACSSVDLEGNDFKALV 468 (717)
Q Consensus 390 ~y~~~~~ig~g~~g~v~~~~~~-~~~~vavK~~~~~~~~~~~~~~~e~~~l~~l~h~ni~~~~~~~~~~~~~~~~~~~lv 468 (717)
.|...++||+|+||.||+|+.+ +|+.||||++........+.+.+|+.++++++||||+++++++.. .+..++|
T Consensus 46 ~~~~~~~lg~G~~g~V~~a~~~~~g~~vavK~~~~~~~~~~~~~~~E~~~l~~l~h~niv~~~~~~~~-----~~~~~lv 120 (321)
T 2c30_A 46 LLDSYVKIGEGSTGIVCLAREKHSGRQVAVKMMDLRKQQRRELLFNEVVIMRDYQHFNVVEMYKSYLV-----GEELWVL 120 (321)
T ss_dssp HEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEETTTCCSHHHHHHHHHHHTTCCCTTBCCEEEEEEE-----TTEEEEE
T ss_pred hhhccEEeccCCCeEEEEEEECCCCcEEEEEEEeccchhHHHHHHHHHHHHHhCCCCCcceEEEEEEE-----CCEEEEE
Confidence 4778889999999999999976 799999999876655556788899999999999999999999643 4589999
Q ss_pred EecCCCCChhhhccCCCCCcccccccCHHHHHHHHHHHHHHHHHHHhcCCCCeeecCCCCCCEEeCCCCceEEeeeccch
Q 005045 469 FEFMSNGNLDQWLHPSPAEHYQFKKLSVIQRLNIAIDVASALDYLHHHCDTPIAHCDLKPSNVLLDKDMTAHVGDFGLAK 548 (717)
Q Consensus 469 ~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~dlkp~NIll~~~~~~kl~Dfg~~~ 548 (717)
|||+++++|.+++.. ..+++..+..++.||+.||+|||+. +|+||||||+||+++.++.+||+|||.+.
T Consensus 121 ~e~~~~~~L~~~l~~--------~~l~~~~~~~i~~qi~~~L~~LH~~---~ivH~Dlkp~NIll~~~~~~kl~Dfg~~~ 189 (321)
T 2c30_A 121 MEFLQGGALTDIVSQ--------VRLNEEQIATVCEAVLQALAYLHAQ---GVIHRDIKSDSILLTLDGRVKLSDFGFCA 189 (321)
T ss_dssp ECCCCSCBHHHHHTT--------CCCCHHHHHHHHHHHHHHHHHHHHT---TEECCCCSGGGEEECTTCCEEECCCTTCE
T ss_pred EecCCCCCHHHHHHh--------cCCCHHHHHHHHHHHHHHHHHHHHC---CeecCCCCHHHEEECCCCcEEEeeeeeee
Confidence 999999999999864 3589999999999999999999997 99999999999999999999999999987
Q ss_pred hcccccCCCCCCcceeecccccccccCCCccCC-CCCcccchhhHHHHHHHHHhCCCCCCCCCCCchhhhHHHHhcCChh
Q 005045 549 FLFEISDNPSKNQTVSIGLKGSIGYIPPEHMNG-QVSILGDIYSYGILLLEMFTGKRPTGDMFKDDFSIHMFVSMALPDH 627 (717)
Q Consensus 549 ~~~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~-~~~~~sDvwslG~vl~elltg~~p~~~~~~~~~~~~~~~~~~~~~~ 627 (717)
..... ........||+.|+|||++.+ .++.++|||||||++|+|++|..||...... ......
T Consensus 190 ~~~~~-------~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~slG~il~el~~g~~pf~~~~~~--~~~~~~------- 253 (321)
T 2c30_A 190 QISKD-------VPKRKSLVGTPYWMAPEVISRSLYATEVDIWSLGIMVIEMVDGEPPYFSDSPV--QAMKRL------- 253 (321)
T ss_dssp ECCSS-------SCCBCCCCSCGGGCCHHHHTTCCBCTHHHHHHHHHHHHHHHHSSCTTTTSCHH--HHHHHH-------
T ss_pred ecccC-------ccccccccCCccccCHhhhcCCCCCchhhHHHHHHHHHHHHhCCCCCCCCCHH--HHHHHH-------
Confidence 65211 112234568999999999655 5899999999999999999999999653211 111111
Q ss_pred hhhhcCCCCCCCCCCcHHHHHHHHHHHHHHhhhhhhhcchhhhHHHHHHHHHHhhccCCCCcCCCCCHHHHHHH
Q 005045 628 VMDILDPSMPLDEENDEEQIEEVIEEKEMMIHIDLEVNTKNKLEECFVSVLRIGLMCSTTSPRERIAMNVVVNN 701 (717)
Q Consensus 628 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~cl~~~p~~Rps~~eil~~ 701 (717)
.....+... ....++..+.+++.+||+.+|++|||++|+++.
T Consensus 254 -~~~~~~~~~-------------------------------~~~~~~~~l~~li~~~l~~dp~~Rps~~ell~h 295 (321)
T 2c30_A 254 -RDSPPPKLK-------------------------------NSHKVSPVLRDFLERMLVRDPQERATAQELLDH 295 (321)
T ss_dssp -HHSSCCCCT-------------------------------TGGGSCHHHHHHHHHHSCSSTTTSCCHHHHHTS
T ss_pred -hcCCCCCcC-------------------------------ccccCCHHHHHHHHHHccCChhhCcCHHHHhcC
Confidence 111111110 111224567899999999999999999999863
No 98
>1kob_A Twitchin; kinase, intrasteric regulation; 2.30A {Aplysia californica} SCOP: d.144.1.7
Probab=100.00 E-value=5.7e-39 Score=341.31 Aligned_cols=252 Identities=20% Similarity=0.298 Sum_probs=200.5
Q ss_pred ccccccccccCcccccceEEEEeC-CCchhhhHHhHhhhhhHHHHHHHHHHHHhcCCCCceeEEEEeeccccCCCCceEE
Q 005045 388 TDNFSKENLIGTGSFGSVYKGTLG-DGTIVAIKVLKLQQQGALKSFIDECNALKSTRHRNILRVITACSSVDLEGNDFKA 466 (717)
Q Consensus 388 ~~~y~~~~~ig~g~~g~v~~~~~~-~~~~vavK~~~~~~~~~~~~~~~e~~~l~~l~h~ni~~~~~~~~~~~~~~~~~~~ 466 (717)
.++|++.+.||+|+||.||+|.++ +|+.||+|++..........+.+|++++++++||||+++++++ .+....+
T Consensus 50 ~~~y~i~~~LG~G~~g~Vy~~~~~~~~~~~a~K~~~~~~~~~~~~~~~E~~il~~l~hpnIv~~~~~~-----~~~~~~~ 124 (387)
T 1kob_A 50 YDYYDILEELGSGAFGVVHRCVEKATGRVFVAKFINTPYPLDKYTVKNEISIMNQLHHPKLINLHDAF-----EDKYEMV 124 (387)
T ss_dssp GGTEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEECCSHHHHHHHHHHHHHHTTCCSTTBCCEEEEE-----ECSSEEE
T ss_pred ccceEEEEEEecCCCEEEEEEEECCCCCEEEEEEecccchhhHHHHHHHHHHHHhCCCcCCCeEEEEE-----EeCCEEE
Confidence 568999999999999999999965 7899999998765444556788999999999999999999995 3456899
Q ss_pred EEEecCCCCChhhhccCCCCCcccccccCHHHHHHHHHHHHHHHHHHHhcCCCCeeecCCCCCCEEeCC--CCceEEeee
Q 005045 467 LVFEFMSNGNLDQWLHPSPAEHYQFKKLSVIQRLNIAIDVASALDYLHHHCDTPIAHCDLKPSNVLLDK--DMTAHVGDF 544 (717)
Q Consensus 467 lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~dlkp~NIll~~--~~~~kl~Df 544 (717)
+||||+++++|.+++.... ..+++..+..++.||+.||+|||+. +|+||||||+||+++. .+.+||+||
T Consensus 125 lv~E~~~gg~L~~~l~~~~------~~l~~~~~~~i~~qi~~aL~~LH~~---givHrDlkp~NIll~~~~~~~vkL~DF 195 (387)
T 1kob_A 125 LILEFLSGGELFDRIAAED------YKMSEAEVINYMRQACEGLKHMHEH---SIVHLDIKPENIMCETKKASSVKIIDF 195 (387)
T ss_dssp EEEECCCCCBHHHHTTCTT------CCBCHHHHHHHHHHHHHHHHHHHHT---TEECCCCCGGGEEESSTTCCCEEECCC
T ss_pred EEEEcCCCCcHHHHHHhhc------CCCCHHHHHHHHHHHHHHHHHHHhC---CeeecccchHHeEEecCCCCceEEEec
Confidence 9999999999999987542 4689999999999999999999998 9999999999999974 578999999
Q ss_pred ccchhcccccCCCCCCcceeecccccccccCCCccCC-CCCcccchhhHHHHHHHHHhCCCCCCCCCCCchhhhHHHHhc
Q 005045 545 GLAKFLFEISDNPSKNQTVSIGLKGSIGYIPPEHMNG-QVSILGDIYSYGILLLEMFTGKRPTGDMFKDDFSIHMFVSMA 623 (717)
Q Consensus 545 g~~~~~~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~-~~~~~sDvwslG~vl~elltg~~p~~~~~~~~~~~~~~~~~~ 623 (717)
|.+..... ........||+.|+|||++.+ .++.++|||||||++|+|++|..||...... ........
T Consensus 196 G~a~~~~~--------~~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwSlG~il~elltg~~Pf~~~~~~--~~~~~i~~- 264 (387)
T 1kob_A 196 GLATKLNP--------DEIVKVTTATAEFAAPEIVDREPVGFYTDMWAIGVLGYVLLSGLSPFAGEDDL--ETLQNVKR- 264 (387)
T ss_dssp TTCEECCT--------TSCEEEECSSGGGCCHHHHTTCCBCHHHHHHHHHHHHHHHHHSCCSSCCSSHH--HHHHHHHH-
T ss_pred ccceecCC--------CcceeeeccCCCccCchhccCCCCCCcccEeeHhHHHHHHHhCCCCCCCCCHH--HHHHHHHh-
Confidence 99986511 112234568999999999765 4899999999999999999999999754211 11111100
Q ss_pred CChhhhhhcCCCCCCCCCCcHHHHHHHHHHHHHHhhhhhhhcchhhhHHHHHHHHHHhhccCCCCcCCCCCHHHHHHH
Q 005045 624 LPDHVMDILDPSMPLDEENDEEQIEEVIEEKEMMIHIDLEVNTKNKLEECFVSVLRIGLMCSTTSPRERIAMNVVVNN 701 (717)
Q Consensus 624 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~cl~~~p~~Rps~~eil~~ 701 (717)
....... .....++..+.+++.+||+.+|++|||+.|+++.
T Consensus 265 ----------~~~~~~~---------------------------~~~~~~s~~~~~li~~~L~~dP~~Rpt~~ell~h 305 (387)
T 1kob_A 265 ----------CDWEFDE---------------------------DAFSSVSPEAKDFIKNLLQKEPRKRLTVHDALEH 305 (387)
T ss_dssp ----------CCCCCCS---------------------------STTTTSCHHHHHHHHTTSCSSGGGSCCHHHHHTS
T ss_pred ----------CCCCCCc---------------------------cccccCCHHHHHHHHHHcCCChhHCcCHHHHhhC
Confidence 0000000 0011225567899999999999999999999863
No 99
>3soa_A Calcium/calmodulin-dependent protein kinase type alpha with A beta 7 linker; phosphorylation, cytosolic, transferase-transferase inhibitor complex; HET: DB8; 3.55A {Homo sapiens}
Probab=100.00 E-value=5.1e-39 Score=347.49 Aligned_cols=253 Identities=20% Similarity=0.297 Sum_probs=198.6
Q ss_pred ccccccccccccCcccccceEEEEeC-CCchhhhHHhHhhh--hhHHHHHHHHHHHHhcCCCCceeEEEEeeccccCCCC
Q 005045 386 KSTDNFSKENLIGTGSFGSVYKGTLG-DGTIVAIKVLKLQQ--QGALKSFIDECNALKSTRHRNILRVITACSSVDLEGN 462 (717)
Q Consensus 386 ~~~~~y~~~~~ig~g~~g~v~~~~~~-~~~~vavK~~~~~~--~~~~~~~~~e~~~l~~l~h~ni~~~~~~~~~~~~~~~ 462 (717)
...++|++.+.||+|+||.||+|.+. +|+.||+|++.... ....+.+.+|+++++.++||||+++++++ .+.
T Consensus 8 ~~~~~Y~i~~~LG~G~fg~V~~~~~~~~~~~~a~K~i~~~~~~~~~~~~~~~E~~il~~l~hpnIv~l~~~~-----~~~ 82 (444)
T 3soa_A 8 RFTEEYQLFEELGKGAFSVVRRCVKVLAGQEYAAMIINTKKLSARDHQKLEREARICRLLKHPNIVRLHDSI-----SEE 82 (444)
T ss_dssp HHHHHEEEEEEEEEC--CEEEEEEETTTTEEEEEEEEESCSCHHHHHHHHHHHHHHHHHCCBTTBCCEEEEE-----ECS
T ss_pred cccCCeEEEEEeccCCCeEEEEEEECCCCcEEEEEEEEcccCCHHHHHHHHHHHHHHHhCCCcCCCeEEEEE-----EEC
Confidence 34678999999999999999999965 89999999886432 33456788999999999999999999995 455
Q ss_pred ceEEEEEecCCCCChhhhccCCCCCcccccccCHHHHHHHHHHHHHHHHHHHhcCCCCeeecCCCCCCEEeC---CCCce
Q 005045 463 DFKALVFEFMSNGNLDQWLHPSPAEHYQFKKLSVIQRLNIAIDVASALDYLHHHCDTPIAHCDLKPSNVLLD---KDMTA 539 (717)
Q Consensus 463 ~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~dlkp~NIll~---~~~~~ 539 (717)
+..++||||+++++|.+++... ..+++..+..++.||+.||+|||+. +|+||||||+||+++ .++.+
T Consensus 83 ~~~~lv~E~~~gg~L~~~i~~~-------~~~~e~~~~~i~~qil~aL~~lH~~---givHrDlKp~NIll~~~~~~~~v 152 (444)
T 3soa_A 83 GHHYLIFDLVTGGELFEDIVAR-------EYYSEADASHCIQQILEAVLHCHQM---GVVHRNLKPENLLLASKLKGAAV 152 (444)
T ss_dssp SEEEEEECCCBCCBHHHHHHHC-------SCCCHHHHHHHHHHHHHHHHHHHHT---TCBCCCCSSTTEEESBSSTTCCE
T ss_pred CEEEEEEEeCCCCCHHHHHHHc-------CCCCHHHHHHHHHHHHHHHHHHHHC---CccccCCCHHHEEEeccCCCCcE
Confidence 6899999999999999988754 5689999999999999999999998 999999999999998 46789
Q ss_pred EEeeeccchhcccccCCCCCCcceeecccccccccCCCccCC-CCCcccchhhHHHHHHHHHhCCCCCCCCCCCchhhhH
Q 005045 540 HVGDFGLAKFLFEISDNPSKNQTVSIGLKGSIGYIPPEHMNG-QVSILGDIYSYGILLLEMFTGKRPTGDMFKDDFSIHM 618 (717)
Q Consensus 540 kl~Dfg~~~~~~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~-~~~~~sDvwslG~vl~elltg~~p~~~~~~~~~~~~~ 618 (717)
||+|||.+..... .........||+.|+|||++.+ .++.++||||+||++|+|++|..||...... ....
T Consensus 153 kL~DFG~a~~~~~-------~~~~~~~~~gt~~Y~APE~l~~~~~~~~~DIwSlGvilyell~G~~Pf~~~~~~--~~~~ 223 (444)
T 3soa_A 153 KLADFGLAIEVEG-------EQQAWFGFAGTPGYLSPEVLRKDPYGKPVDLWACGVILYILLVGYPPFWDEDQH--RLYQ 223 (444)
T ss_dssp EECCCSSCBCCCT-------TCCBCCCSCSCGGGCCHHHHTTCCBCTHHHHHHHHHHHHHHHHSSCSCCCSSHH--HHHH
T ss_pred EEccCceeEEecC-------CCceeecccCCcccCCHHHhcCCCCCCccccHHHHHHHHHHHhCCCCCCCccHH--HHHH
Confidence 9999999976521 1122234679999999999766 5899999999999999999999999653211 1111
Q ss_pred HHHhcCChhhhhhcCCCCCCCCCCcHHHHHHHHHHHHHHhhhhhhhcchhhhHHHHHHHHHHhhccCCCCcCCCCCHHHH
Q 005045 619 FVSMALPDHVMDILDPSMPLDEENDEEQIEEVIEEKEMMIHIDLEVNTKNKLEECFVSVLRIGLMCSTTSPRERIAMNVV 698 (717)
Q Consensus 619 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~cl~~~p~~Rps~~ei 698 (717)
...... .+...+ ....++..+.+++.+||+.||++|||+.|+
T Consensus 224 ~i~~~~-------~~~~~~-------------------------------~~~~~s~~~~~li~~~L~~dP~~Rpta~e~ 265 (444)
T 3soa_A 224 QIKAGA-------YDFPSP-------------------------------EWDTVTPEAKDLINKMLTINPSKRITAAEA 265 (444)
T ss_dssp HHHHTC-------CCCCTT-------------------------------TTTTSCHHHHHHHHHHSCSSTTTSCCHHHH
T ss_pred HHHhCC-------CCCCcc-------------------------------ccccCCHHHHHHHHHHcCCChhHCCCHHHH
Confidence 111000 000000 001124567899999999999999999999
Q ss_pred HH
Q 005045 699 VN 700 (717)
Q Consensus 699 l~ 700 (717)
++
T Consensus 266 L~ 267 (444)
T 3soa_A 266 LK 267 (444)
T ss_dssp HH
T ss_pred hc
Confidence 86
No 100
>2bdw_A Hypothetical protein K11E8.1D; kinase, calmodulin activated, transferase; 1.80A {Caenorhabditis elegans} PDB: 2wel_A* 2v7o_A* 2vz6_A* 1cdm_B 1cm1_B 1cm4_B
Probab=100.00 E-value=3.6e-39 Score=340.88 Aligned_cols=258 Identities=21% Similarity=0.340 Sum_probs=201.3
Q ss_pred cccccccccccccccccCcccccceEEEEeC-CCchhhhHHhHhhh--hhHHHHHHHHHHHHhcCCCCceeEEEEeeccc
Q 005045 381 YSDISKSTDNFSKENLIGTGSFGSVYKGTLG-DGTIVAIKVLKLQQ--QGALKSFIDECNALKSTRHRNILRVITACSSV 457 (717)
Q Consensus 381 ~~~~~~~~~~y~~~~~ig~g~~g~v~~~~~~-~~~~vavK~~~~~~--~~~~~~~~~e~~~l~~l~h~ni~~~~~~~~~~ 457 (717)
........++|++.+.||+|+||.||+|.++ +|+.||+|++.... ....+.+.+|++++++++||||+++++++
T Consensus 21 ~~~~~~~~~~y~~~~~lG~G~~g~V~~~~~~~~~~~~avK~~~~~~~~~~~~~~~~~E~~il~~l~hpnIv~~~~~~--- 97 (362)
T 2bdw_A 21 MNASTKFSDNYDVKEELGKGAFSVVRRCVHKTTGLEFAAKIINTKKLSARDFQKLEREARICRKLQHPNIVRLHDSI--- 97 (362)
T ss_dssp ---CCHHHHHEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEETTTCCHHHHHHHHHHHHHHHHCCCTTBCCEEEEE---
T ss_pred ecCCCCcccCeEEeeEEecCCCeEEEEEEECCCCCEEEEEEEEcccCCHHHHHHHHHHHHHHHhCCCCCCCeEEEEE---
Confidence 3334445678999999999999999999965 78999999986442 33457788999999999999999999995
Q ss_pred cCCCCceEEEEEecCCCCChhhhccCCCCCcccccccCHHHHHHHHHHHHHHHHHHHhcCCCCeeecCCCCCCEEeCCC-
Q 005045 458 DLEGNDFKALVFEFMSNGNLDQWLHPSPAEHYQFKKLSVIQRLNIAIDVASALDYLHHHCDTPIAHCDLKPSNVLLDKD- 536 (717)
Q Consensus 458 ~~~~~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~dlkp~NIll~~~- 536 (717)
.+.+..++||||+++++|.+++... ..+++..+..++.||+.||+|||+. +|+||||||+||+++.+
T Consensus 98 --~~~~~~~lv~e~~~gg~L~~~l~~~-------~~~~~~~~~~~~~qi~~al~~lH~~---~ivH~Dlkp~NIll~~~~ 165 (362)
T 2bdw_A 98 --QEESFHYLVFDLVTGGELFEDIVAR-------EFYSEADASHCIQQILESIAYCHSN---GIVHRNLKPENLLLASKA 165 (362)
T ss_dssp --ECSSEEEEEECCCCSCBHHHHHTTC-------SCCCHHHHHHHHHHHHHHHHHHHHT---TCBCCCCSGGGEEESCSS
T ss_pred --EeCCEEEEEEecCCCCCHHHHHHHc-------CCCCHHHHHHHHHHHHHHHHHHHHC---CeEeccCchHHEEEecCC
Confidence 4456899999999999999998754 5689999999999999999999998 99999999999999865
Q ss_pred --CceEEeeeccchhcccccCCCCCCcceeecccccccccCCCccCC-CCCcccchhhHHHHHHHHHhCCCCCCCCCCCc
Q 005045 537 --MTAHVGDFGLAKFLFEISDNPSKNQTVSIGLKGSIGYIPPEHMNG-QVSILGDIYSYGILLLEMFTGKRPTGDMFKDD 613 (717)
Q Consensus 537 --~~~kl~Dfg~~~~~~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~-~~~~~sDvwslG~vl~elltg~~p~~~~~~~~ 613 (717)
+.+||+|||.+..... ........||+.|+|||++.+ .++.++|||||||++|+|++|..||......
T Consensus 166 ~~~~~kl~DfG~a~~~~~--------~~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~~ll~g~~Pf~~~~~~- 236 (362)
T 2bdw_A 166 KGAAVKLADFGLAIEVND--------SEAWHGFAGTPGYLSPEVLKKDPYSKPVDIWACGVILYILLVGYPPFWDEDQH- 236 (362)
T ss_dssp TTCCEEECCCTTCBCCTT--------CCSCCCSCSCTTTCCHHHHTTCCCCTHHHHHHHHHHHHHHHHSSCSSCCSSHH-
T ss_pred CCCCEEEeecCcceEecC--------CcccccCCCCccccCHHHHccCCCCchhhHHHHHHHHHHHHHCCCCCCCCCHH-
Confidence 4699999999976521 111234569999999999766 5899999999999999999999999653211
Q ss_pred hhhhHHHHhcCChhhhhhcCCCCCCCCCCcHHHHHHHHHHHHHHhhhhhhhcchhhhHHHHHHHHHHhhccCCCCcCCCC
Q 005045 614 FSIHMFVSMALPDHVMDILDPSMPLDEENDEEQIEEVIEEKEMMIHIDLEVNTKNKLEECFVSVLRIGLMCSTTSPRERI 693 (717)
Q Consensus 614 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~cl~~~p~~Rp 693 (717)
........ ....... .....++..+.+++.+||+.+|++||
T Consensus 237 -~~~~~i~~-----------~~~~~~~---------------------------~~~~~~~~~~~~li~~~L~~dP~~R~ 277 (362)
T 2bdw_A 237 -RLYAQIKA-----------GAYDYPS---------------------------PEWDTVTPEAKSLIDSMLTVNPKKRI 277 (362)
T ss_dssp -HHHHHHHH-----------TCCCCCT---------------------------TGGGGSCHHHHHHHHHHSCSSGGGSC
T ss_pred -HHHHHHHh-----------CCCCCCc---------------------------ccccCCCHHHHHHHHHHcCCChhhCc
Confidence 11111100 0000000 00112255678999999999999999
Q ss_pred CHHHHHHH
Q 005045 694 AMNVVVNN 701 (717)
Q Consensus 694 s~~eil~~ 701 (717)
|+.|+++.
T Consensus 278 t~~e~l~h 285 (362)
T 2bdw_A 278 TADQALKV 285 (362)
T ss_dssp CHHHHTTS
T ss_pred CHHHHhcC
Confidence 99999864
No 101
>3qup_A Tyrosine-protein kinase receptor TYRO3; protein kinase inhibitor, receptor tyrosine kinase, spirocyc kinase domain, phosphotransfer, GAS6 ligand; HET: LUN; 1.90A {Mus musculus}
Probab=100.00 E-value=1.4e-39 Score=339.65 Aligned_cols=278 Identities=21% Similarity=0.414 Sum_probs=196.7
Q ss_pred CcccccccccccccccccCcccccceEEEEeC-CCc---hhhhHHhHhh--hhhHHHHHHHHHHHHhcCCCCceeEEEEe
Q 005045 380 SYSDISKSTDNFSKENLIGTGSFGSVYKGTLG-DGT---IVAIKVLKLQ--QQGALKSFIDECNALKSTRHRNILRVITA 453 (717)
Q Consensus 380 s~~~~~~~~~~y~~~~~ig~g~~g~v~~~~~~-~~~---~vavK~~~~~--~~~~~~~~~~e~~~l~~l~h~ni~~~~~~ 453 (717)
.+.++....++|++.+.||+|+||.||+|.+. +++ .||+|++... .....+.+.+|++++++++||||++++++
T Consensus 14 ~~~~~~i~~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~ 93 (323)
T 3qup_A 14 KLEDVLIPEQQFTLGRMLGKGEFGSVREAQLKQEDGSFVKVAVKMLKADIIASSDIEEFLREAACMKEFDHPHVAKLVGV 93 (323)
T ss_dssp --CTTBCC---CEEEEEEEEETTEEEEEEEC-------CEEEEEEC------CHHHHHHHHHHHHHTTCCCTTBCCCCEE
T ss_pred HhhhcccChhHeEEeceecccCCeEEEEEEEcccCCcceeEEEEEecccccCHHHHHHHHHHHHHHHHCCCCceehhhce
Confidence 45566778889999999999999999999965 332 7999998754 33456789999999999999999999998
Q ss_pred eccccCC-CCceEEEEEecCCCCChhhhccCCCCCcccccccCHHHHHHHHHHHHHHHHHHHhcCCCCeeecCCCCCCEE
Q 005045 454 CSSVDLE-GNDFKALVFEFMSNGNLDQWLHPSPAEHYQFKKLSVIQRLNIAIDVASALDYLHHHCDTPIAHCDLKPSNVL 532 (717)
Q Consensus 454 ~~~~~~~-~~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~dlkp~NIl 532 (717)
+...... .....++||||+++++|.+++....... ....+++..+..++.||+.||+|||+. +|+||||||+||+
T Consensus 94 ~~~~~~~~~~~~~~~v~e~~~~~~L~~~l~~~~~~~-~~~~~~~~~~~~i~~qi~~al~~LH~~---~ivH~Dikp~NIl 169 (323)
T 3qup_A 94 SLRSRAKGRLPIPMVILPFMKHGDLHAFLLASRIGE-NPFNLPLQTLVRFMVDIACGMEYLSSR---NFIHRDLAARNCM 169 (323)
T ss_dssp EECC-------CEEEEEECCTTCBHHHHHHHHHC----CCCCCHHHHHHHHHHHHHHHHHHHHT---TCCCSCCSGGGEE
T ss_pred eeccccccCCCccEEEEEeccCCcHHHHHHhhhccc-cccccCHHHHHHHHHHHHHHHHHHHcC---CcccCCCCcceEE
Confidence 6543211 1112489999999999999986331100 113589999999999999999999998 9999999999999
Q ss_pred eCCCCceEEeeeccchhcccccCCCCCCcceeecccccccccCCCccCC-CCCcccchhhHHHHHHHHHh-CCCCCCCCC
Q 005045 533 LDKDMTAHVGDFGLAKFLFEISDNPSKNQTVSIGLKGSIGYIPPEHMNG-QVSILGDIYSYGILLLEMFT-GKRPTGDMF 610 (717)
Q Consensus 533 l~~~~~~kl~Dfg~~~~~~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~-~~~~~sDvwslG~vl~ellt-g~~p~~~~~ 610 (717)
++.++.+||+|||.+....... .........+++.|+|||.+.+ .++.++|||||||++|+|++ |..||....
T Consensus 170 i~~~~~~kl~Dfg~a~~~~~~~-----~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~ell~~g~~p~~~~~ 244 (323)
T 3qup_A 170 LAEDMTVCVADFGLSRKIYSGD-----YYRQGCASKLPVKWLALESLADNLYTVHSDVWAFGVTMWEIMTRGQTPYAGIE 244 (323)
T ss_dssp ECTTSCEEECCCCC----------------------CCGGGCCHHHHHHCCCCHHHHHHHHHHHHHHHHTTSCCTTTTCC
T ss_pred EcCCCCEEEeeccccccccccc-----cccccccccCcccccCchhhcCCCCCCccchhhHHHHHHHHHhCCCCCccccC
Confidence 9999999999999998652211 1112223446788999999654 58999999999999999999 999997653
Q ss_pred CCchhhhHHHHhcCChhhhhhcCCCCCCCCCCcHHHHHHHHHHHHHHhhhhhhhcchhhhHHHHHHHHHHhhccCCCCcC
Q 005045 611 KDDFSIHMFVSMALPDHVMDILDPSMPLDEENDEEQIEEVIEEKEMMIHIDLEVNTKNKLEECFVSVLRIGLMCSTTSPR 690 (717)
Q Consensus 611 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~cl~~~p~ 690 (717)
.... ... +....... .+.+++..+.+++.+||+.+|+
T Consensus 245 ~~~~--~~~-----------~~~~~~~~------------------------------~~~~~~~~l~~li~~~l~~dp~ 281 (323)
T 3qup_A 245 NAEI--YNY-----------LIGGNRLK------------------------------QPPECMEEVYDLMYQCWSADPK 281 (323)
T ss_dssp GGGH--HHH-----------HHTTCCCC------------------------------CCTTCCHHHHHHHHHTTCSSGG
T ss_pred hHHH--HHH-----------HhcCCCCC------------------------------CCCccCHHHHHHHHHHccCChh
Confidence 3221 111 11100000 1112255688999999999999
Q ss_pred CCCCHHHHHHHHHHHHHHH
Q 005045 691 ERIAMNVVVNNLKTIRNCF 709 (717)
Q Consensus 691 ~Rps~~eil~~l~~i~~~~ 709 (717)
+|||+.|+++.|+++.+..
T Consensus 282 ~Rps~~~l~~~l~~~l~~~ 300 (323)
T 3qup_A 282 QRPSFTCLRMELENILGHL 300 (323)
T ss_dssp GSCCHHHHHHHHHHHHHC-
T ss_pred hCcCHHHHHHHHHHHHHHh
Confidence 9999999999999998653
No 102
>1ob3_A PFPK5, cell division control protein 2 homolog; transferase, serine/threonine-protein kinase, ATP-binding, phosphorylation, CDK; 1.9A {Plasmodium falciparum} SCOP: d.144.1.7 PDB: 1v0p_A* 1v0o_A* 1v0b_A
Probab=100.00 E-value=1.6e-39 Score=333.18 Aligned_cols=267 Identities=22% Similarity=0.337 Sum_probs=197.1
Q ss_pred cccccccccCcccccceEEEEeCCCchhhhHHhHhhh--hhHHHHHHHHHHHHhcCCCCceeEEEEeeccccCCCCceEE
Q 005045 389 DNFSKENLIGTGSFGSVYKGTLGDGTIVAIKVLKLQQ--QGALKSFIDECNALKSTRHRNILRVITACSSVDLEGNDFKA 466 (717)
Q Consensus 389 ~~y~~~~~ig~g~~g~v~~~~~~~~~~vavK~~~~~~--~~~~~~~~~e~~~l~~l~h~ni~~~~~~~~~~~~~~~~~~~ 466 (717)
++|++.+.||+|+||.||+|++.+|+.||+|++.... ......+.+|++++++++||||+++++++. ..+..+
T Consensus 2 ~~y~~~~~lg~G~~g~V~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~-----~~~~~~ 76 (288)
T 1ob3_A 2 EKYHGLEKIGEGTYGVVYKAQNNYGETFALKKIRLEKEDEGIPSTTIREISILKELKHSNIVKLYDVIH-----TKKRLV 76 (288)
T ss_dssp CSEEEEEEEEEETTEEEEEEEETTSCEEEEEEECCSSGGGCCCHHHHHHHHGGGGCCCTTBCCEEEEEE-----CSSCEE
T ss_pred ccchhhhhcccCCCEEEEEEEcCCCCEEEEEEEeccccccccchhHHHHHHHHHhcCCCCEeeeeeEEc-----cCCeEE
Confidence 5899999999999999999998889999999986432 223467889999999999999999999954 445899
Q ss_pred EEEecCCCCChhhhccCCCCCcccccccCHHHHHHHHHHHHHHHHHHHhcCCCCeeecCCCCCCEEeCCCCceEEeeecc
Q 005045 467 LVFEFMSNGNLDQWLHPSPAEHYQFKKLSVIQRLNIAIDVASALDYLHHHCDTPIAHCDLKPSNVLLDKDMTAHVGDFGL 546 (717)
Q Consensus 467 lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~dlkp~NIll~~~~~~kl~Dfg~ 546 (717)
+||||+++ +|.+++.... ..+++..+..++.||+.||+|||+. +|+||||||+||+++.++.+||+|||.
T Consensus 77 lv~e~~~~-~l~~~~~~~~------~~~~~~~~~~~~~qi~~~l~~lH~~---~i~H~dlkp~Nil~~~~~~~kl~Dfg~ 146 (288)
T 1ob3_A 77 LVFEHLDQ-DLKKLLDVCE------GGLESVTAKSFLLQLLNGIAYCHDR---RVLHRDLKPQNLLINREGELKIADFGL 146 (288)
T ss_dssp EEEECCSE-EHHHHHHTST------TCCCHHHHHHHHHHHHHHHHHHHHT---TCCCSCCCGGGEEECTTSCEEECCTTH
T ss_pred EEEEecCC-CHHHHHHhcc------cCCCHHHHHHHHHHHHHHHHHHHHC---CeecCCCCHHHEEEcCCCCEEEeECcc
Confidence 99999974 9998887543 5689999999999999999999998 999999999999999999999999999
Q ss_pred chhcccccCCCCCCcceeecccccccccCCCccCC--CCCcccchhhHHHHHHHHHhCCCCCCCCCCCchhhhHHHHh-c
Q 005045 547 AKFLFEISDNPSKNQTVSIGLKGSIGYIPPEHMNG--QVSILGDIYSYGILLLEMFTGKRPTGDMFKDDFSIHMFVSM-A 623 (717)
Q Consensus 547 ~~~~~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~--~~~~~sDvwslG~vl~elltg~~p~~~~~~~~~~~~~~~~~-~ 623 (717)
+...... ........+|+.|+|||++.+ .++.++|||||||++|+|++|..||......+. ....... .
T Consensus 147 ~~~~~~~-------~~~~~~~~~t~~y~aPE~~~~~~~~~~~~DiwslG~il~~l~~g~~pf~~~~~~~~-~~~~~~~~~ 218 (288)
T 1ob3_A 147 ARAFGIP-------VRKYTHEIVTLWYRAPDVLMGSKKYSTTIDIWSVGCIFAEMVNGTPLFPGVSEADQ-LMRIFRILG 218 (288)
T ss_dssp HHHHCC----------------CCCTTCCHHHHTTCCSCCTHHHHHHHHHHHHHHHHSSCSCCCSSHHHH-HHHHHHHHC
T ss_pred ccccCcc-------ccccccccccccccCchheeCCCCCCcHHHHHHHHHHHHHHHhCCCCCCCCCHHHH-HHHHHHHHC
Confidence 9875211 112233468999999999754 479999999999999999999999976532221 1111110 0
Q ss_pred C--Chhhhh-----hcCCCCCCCCCCcHHHHHHHHHHHHHHhhhhhhhcchhhhHHHHHHHHHHhhccCCCCcCCCCCHH
Q 005045 624 L--PDHVMD-----ILDPSMPLDEENDEEQIEEVIEEKEMMIHIDLEVNTKNKLEECFVSVLRIGLMCSTTSPRERIAMN 696 (717)
Q Consensus 624 ~--~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~cl~~~p~~Rps~~ 696 (717)
. ...+.. ..++......... -.......+..+.+++.+||+.||++|||++
T Consensus 219 ~~~~~~~~~~~~~~~~~~~~~~~~~~~----------------------~~~~~~~~~~~~~~li~~~L~~dP~~Rpt~~ 276 (288)
T 1ob3_A 219 TPNSKNWPNVTELPKYDPNFTVYEPLP----------------------WESFLKGLDESGIDLLSKMLKLDPNQRITAK 276 (288)
T ss_dssp CCCTTTSTTGGGSTTCCTTCCCCCCCC----------------------GGGTCCSCCHHHHHHHHHHTCSSTTTSCCHH
T ss_pred CCChhhchhhhcccccccccccccCcc----------------------HHHHhhhcCHHHHHHHHHHcCCCcccCCCHH
Confidence 0 000000 0111111000000 0001112355678999999999999999999
Q ss_pred HHHH
Q 005045 697 VVVN 700 (717)
Q Consensus 697 eil~ 700 (717)
|+++
T Consensus 277 e~l~ 280 (288)
T 1ob3_A 277 QALE 280 (288)
T ss_dssp HHHT
T ss_pred HHhc
Confidence 9986
No 103
>3c0i_A Peripheral plasma membrane protein CASK; neurexin, Ca2+/calmodulin dependent protein kinase, Mg synaptic plasticity, pseudokinase, maguk; HET: 3AM; 1.85A {Homo sapiens} PDB: 3c0h_A* 3c0g_A* 3mfr_A* 3mfs_A* 3mft_A 3mfu_A* 3tac_A
Probab=100.00 E-value=1.7e-39 Score=342.40 Aligned_cols=254 Identities=22% Similarity=0.285 Sum_probs=197.2
Q ss_pred ccccccccccCcccccceEEEEeC-CCchhhhHHhHhhhh-----hHHHHHHHHHHHHhcCCCCceeEEEEeeccccCCC
Q 005045 388 TDNFSKENLIGTGSFGSVYKGTLG-DGTIVAIKVLKLQQQ-----GALKSFIDECNALKSTRHRNILRVITACSSVDLEG 461 (717)
Q Consensus 388 ~~~y~~~~~ig~g~~g~v~~~~~~-~~~~vavK~~~~~~~-----~~~~~~~~e~~~l~~l~h~ni~~~~~~~~~~~~~~ 461 (717)
.++|++.+.||+|+||.||+|.++ +++.||+|++..... ...+.+.+|+++++.++||||+++++++. .
T Consensus 23 ~~~y~~~~~lG~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~~~E~~~l~~l~hpnIv~~~~~~~-----~ 97 (351)
T 3c0i_A 23 EDVYELCEVIGKGPFSVVRRCINRETGQQFAVKIVDVAKFTSSPGLSTEDLKREASICHMLKHPHIVELLETYS-----S 97 (351)
T ss_dssp HHHEEEEEEEEECSSEEEEEEEETTTCCEEEEEEEEHHHHHTSSSCCHHHHHHHHHHHHHCCCTTBCCEEEEEE-----E
T ss_pred ccceEEeeEEeeCCCEEEEEEEECCCCCEEEEEEEEhhhccccccchHHHHHHHHHHHHhCCCCCCCcEEEEEE-----e
Confidence 568999999999999999999965 799999998864321 13577899999999999999999999954 4
Q ss_pred CceEEEEEecCCCCChhhhccCCCCCcccccccCHHHHHHHHHHHHHHHHHHHhcCCCCeeecCCCCCCEEeCCCCc---
Q 005045 462 NDFKALVFEFMSNGNLDQWLHPSPAEHYQFKKLSVIQRLNIAIDVASALDYLHHHCDTPIAHCDLKPSNVLLDKDMT--- 538 (717)
Q Consensus 462 ~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~dlkp~NIll~~~~~--- 538 (717)
.+..|+||||+++++|.+++..... ....+++..+..++.||+.||+|||+. +|+||||||+||+++.++.
T Consensus 98 ~~~~~lv~e~~~g~~L~~~l~~~~~---~~~~~~~~~~~~i~~qi~~al~~lH~~---~ivHrDlkp~NIl~~~~~~~~~ 171 (351)
T 3c0i_A 98 DGMLYMVFEFMDGADLCFEIVKRAD---AGFVYSEAVASHYMRQILEALRYCHDN---NIIHRDVKPHCVLLASKENSAP 171 (351)
T ss_dssp TTEEEEEEECCSSCBHHHHHHHHHH---TTCCCCHHHHHHHHHHHHHHHHHHHHT---TEECSCCSGGGEEECSSSTTCC
T ss_pred CCEEEEEEeCCCCCCHHHHHHHhcc---cCCCCCHHHHHHHHHHHHHHHHHHHHC---CceeccCChHHeEEecCCCCCc
Confidence 4589999999999999887753210 113589999999999999999999998 9999999999999986654
Q ss_pred eEEeeeccchhcccccCCCCCCcceeecccccccccCCCccCC-CCCcccchhhHHHHHHHHHhCCCCCCCCCCCchhhh
Q 005045 539 AHVGDFGLAKFLFEISDNPSKNQTVSIGLKGSIGYIPPEHMNG-QVSILGDIYSYGILLLEMFTGKRPTGDMFKDDFSIH 617 (717)
Q Consensus 539 ~kl~Dfg~~~~~~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~-~~~~~sDvwslG~vl~elltg~~p~~~~~~~~~~~~ 617 (717)
+||+|||.+...... ........||+.|+|||++.+ .++.++|||||||++|+|++|..||.... ....
T Consensus 172 vkl~Dfg~a~~~~~~-------~~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~~ll~g~~pf~~~~---~~~~ 241 (351)
T 3c0i_A 172 VKLGGFGVAIQLGES-------GLVAGGRVGTPHFMAPEVVKREPYGKPVDVWGCGVILFILLSGCLPFYGTK---ERLF 241 (351)
T ss_dssp EEECCCTTCEECCTT-------SCBCCCCCSCGGGCCHHHHTTCCBCTHHHHHHHHHHHHHHHHSSCSSCSSH---HHHH
T ss_pred EEEecCcceeEecCC-------CeeecCCcCCcCccCHHHHcCCCCCchHhhHHHHHHHHHHHHCCCCCCCcH---HHHH
Confidence 999999999865221 112234569999999999765 48999999999999999999999996531 1110
Q ss_pred HHHHhcCChhhhhhcCCCCCCCCCCcHHHHHHHHHHHHHHhhhhhhhcchhhhHHHHHHHHHHhhccCCCCcCCCCCHHH
Q 005045 618 MFVSMALPDHVMDILDPSMPLDEENDEEQIEEVIEEKEMMIHIDLEVNTKNKLEECFVSVLRIGLMCSTTSPRERIAMNV 697 (717)
Q Consensus 618 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~cl~~~p~~Rps~~e 697 (717)
. .+........+ .....++..+.+++.+||+.||++|||+.|
T Consensus 242 ~-----------~i~~~~~~~~~---------------------------~~~~~~s~~~~~li~~~L~~dP~~R~s~~e 283 (351)
T 3c0i_A 242 E-----------GIIKGKYKMNP---------------------------RQWSHISESAKDLVRRMLMLDPAERITVYE 283 (351)
T ss_dssp H-----------HHHHTCCCCCH---------------------------HHHTTSCHHHHHHHHHHTCSSTTTSCCHHH
T ss_pred H-----------HHHcCCCCCCc---------------------------cccccCCHHHHHHHHHHCCCChhHCcCHHH
Confidence 0 01111110000 001122556789999999999999999999
Q ss_pred HHH
Q 005045 698 VVN 700 (717)
Q Consensus 698 il~ 700 (717)
+++
T Consensus 284 ~l~ 286 (351)
T 3c0i_A 284 ALN 286 (351)
T ss_dssp HHT
T ss_pred Hhc
Confidence 985
No 104
>4dc2_A Protein kinase C IOTA type; kinase, substrate, cell polarity, atypical PKC, trans transferase substrate complex; HET: TPO ADE; 2.40A {Mus musculus}
Probab=100.00 E-value=2.1e-39 Score=344.55 Aligned_cols=202 Identities=24% Similarity=0.388 Sum_probs=172.1
Q ss_pred ccccccccccccCcccccceEEEEeC-CCchhhhHHhHhhh---hhHHHHHHHHHHHHhcC-CCCceeEEEEeeccccCC
Q 005045 386 KSTDNFSKENLIGTGSFGSVYKGTLG-DGTIVAIKVLKLQQ---QGALKSFIDECNALKST-RHRNILRVITACSSVDLE 460 (717)
Q Consensus 386 ~~~~~y~~~~~ig~g~~g~v~~~~~~-~~~~vavK~~~~~~---~~~~~~~~~e~~~l~~l-~h~ni~~~~~~~~~~~~~ 460 (717)
...++|++.++||+|+||.||+|+.+ +++.||+|++.... ......+..|..+++++ +||||+++++++ .
T Consensus 49 ~~~~~y~~~~~LG~G~fG~V~~~~~~~~~~~~AvK~~~k~~~~~~~~~~~~~~E~~il~~~~~hp~Iv~l~~~~-----~ 123 (396)
T 4dc2_A 49 LGLQDFDLLRVIGRGSYAKVLLVRLKKTDRIYAMRVVKKELVNDDEDIDWVQTEKHVFEQASNHPFLVGLHSCF-----Q 123 (396)
T ss_dssp CCGGGEEEEEEEEECSSEEEEEEEETTTTEEEEEEEEEGGGTC----CCHHHHHHHHHHHHTTCTTBCCEEEEE-----E
T ss_pred CChhHcEEEEEEeeCCCeEEEEEEECCCCCEEEEEEEEhhhccCHHHHHHHHHHHHHHHhcCCCCCcCeeEEEE-----E
Confidence 34678999999999999999999965 78899999987542 33346678899999887 899999999985 4
Q ss_pred CCceEEEEEecCCCCChhhhccCCCCCcccccccCHHHHHHHHHHHHHHHHHHHhcCCCCeeecCCCCCCEEeCCCCceE
Q 005045 461 GNDFKALVFEFMSNGNLDQWLHPSPAEHYQFKKLSVIQRLNIAIDVASALDYLHHHCDTPIAHCDLKPSNVLLDKDMTAH 540 (717)
Q Consensus 461 ~~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~dlkp~NIll~~~~~~k 540 (717)
..+..++||||+++|+|.+++... ..+++..++.++.||+.||+|||+. +|+||||||+||+++.+|.+|
T Consensus 124 ~~~~~~lV~E~~~gg~L~~~l~~~-------~~l~~~~~~~~~~qi~~aL~~LH~~---givHrDLKp~NILl~~~g~ik 193 (396)
T 4dc2_A 124 TESRLFFVIEYVNGGDLMFHMQRQ-------RKLPEEHARFYSAEISLALNYLHER---GIIYRDLKLDNVLLDSEGHIK 193 (396)
T ss_dssp CSSEEEEEEECCTTCBHHHHHHHH-------SSCCHHHHHHHHHHHHHHHHHHHHT---TCBCCCCCGGGEEECTTSCEE
T ss_pred ECCEEEEEEEcCCCCcHHHHHHHc-------CCCCHHHHHHHHHHHHHHHHHHHHC---CEEeccCCHHHEEECCCCCEE
Confidence 456899999999999999998754 5689999999999999999999998 999999999999999999999
Q ss_pred EeeeccchhcccccCCCCCCcceeecccccccccCCCccCC-CCCcccchhhHHHHHHHHHhCCCCCCCC
Q 005045 541 VGDFGLAKFLFEISDNPSKNQTVSIGLKGSIGYIPPEHMNG-QVSILGDIYSYGILLLEMFTGKRPTGDM 609 (717)
Q Consensus 541 l~Dfg~~~~~~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~-~~~~~sDvwslG~vl~elltg~~p~~~~ 609 (717)
|+|||+++.... .........||+.|+|||++.+ .++.++|||||||++|||++|..||...
T Consensus 194 L~DFGla~~~~~-------~~~~~~~~~gt~~Y~aPE~l~~~~~~~~~DiwslGvllyell~G~~Pf~~~ 256 (396)
T 4dc2_A 194 LTDYGMCKEGLR-------PGDTTSTFCGTPNYIAPEILRGEDYGFSVDWWALGVLMFEMMAGRSPFDIV 256 (396)
T ss_dssp ECCCTTCBCCCC-------TTCCBCCCCBCGGGCCHHHHTTCCBCTHHHHHHHHHHHHHHHHSSCSSTTT
T ss_pred Eeecceeeeccc-------CCCccccccCCcccCCchhhcCCCCChHHHHHHHHHHHHHHHhCCCCCccc
Confidence 999999975311 1122344679999999999765 4899999999999999999999999654
No 105
>4hgt_A Casein kinase I isoform delta; CK1D, inhibitor, transferase-transferase inhibitor C; HET: 15G; 1.80A {Homo sapiens} PDB: 3uys_A* 3uyt_A* 3uzp_A* 4hnf_A* 1cki_A 1ckj_A 4hni_A* 4hok_A
Probab=100.00 E-value=3.2e-39 Score=332.55 Aligned_cols=274 Identities=21% Similarity=0.265 Sum_probs=205.2
Q ss_pred ccccccccccccCcccccceEEEEe-CCCchhhhHHhHhhhhhHHHHHHHHHHHHhcCCCCceeEEEEeeccccCCCCce
Q 005045 386 KSTDNFSKENLIGTGSFGSVYKGTL-GDGTIVAIKVLKLQQQGALKSFIDECNALKSTRHRNILRVITACSSVDLEGNDF 464 (717)
Q Consensus 386 ~~~~~y~~~~~ig~g~~g~v~~~~~-~~~~~vavK~~~~~~~~~~~~~~~e~~~l~~l~h~ni~~~~~~~~~~~~~~~~~ 464 (717)
...++|++.+.||+|+||.||+|.+ .+++.||+|+..... ....+.+|+++++.+.|++++..+..+. ...+.
T Consensus 6 ~~~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~--~~~~~~~e~~~l~~l~~~~~i~~~~~~~----~~~~~ 79 (296)
T 4hgt_A 6 RVGNRYRLGRKIGSGSFGDIYLGTDIAAGEEVAIKLECVKT--KHPQLHIESKIYKMMQGGVGIPTIRWCG----AEGDY 79 (296)
T ss_dssp -----CEEEEEEEECSSSEEEEEEETTTTEEEEEEEEEC-----CCCHHHHHHHHHHHTTSTTCCCEEEEE----EETTE
T ss_pred ccCCceEEeeeecCCCCeEEEEEEEcCCCceEEEEeecccc--cchHHHHHHHHHHHhcCCCCCCeeeeec----CCCCc
Confidence 3467999999999999999999996 489999999865432 2245778999999999888777777653 34568
Q ss_pred EEEEEecCCCCChhhhccCCCCCcccccccCHHHHHHHHHHHHHHHHHHHhcCCCCeeecCCCCCCEEe---CCCCceEE
Q 005045 465 KALVFEFMSNGNLDQWLHPSPAEHYQFKKLSVIQRLNIAIDVASALDYLHHHCDTPIAHCDLKPSNVLL---DKDMTAHV 541 (717)
Q Consensus 465 ~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~dlkp~NIll---~~~~~~kl 541 (717)
.++||||+ +++|.+++.... ..+++..+..++.||+.||+|||+. +|+||||||+||++ +.++.+||
T Consensus 80 ~~lv~e~~-~~~L~~~~~~~~------~~~~~~~~~~i~~qi~~~l~~LH~~---~ivH~Dlkp~NIl~~~~~~~~~~kL 149 (296)
T 4hgt_A 80 NVMVMELL-GPSLEDLFNFCS------RKFSLKTVLLLADQMISRIEYIHSK---NFIHRDVKPDNFLMGLGKKGNLVYI 149 (296)
T ss_dssp EEEEEECC-CCBHHHHHHHTT------SCCCHHHHHHHHHHHHHHHHHHHHT---TEECSCCSGGGEEECCGGGTTCEEE
T ss_pred eEEEEEcc-CCCHHHHHHHhc------CCCCHHHHHHHHHHHHHHHHHHHHC---CeecCCCCHHHeeeeccCCCCeEEE
Confidence 89999999 899999987432 4689999999999999999999998 99999999999999 78899999
Q ss_pred eeeccchhcccccCCCCCCcceeecccccccccCCCccCC-CCCcccchhhHHHHHHHHHhCCCCCCCCCCCchhhhHHH
Q 005045 542 GDFGLAKFLFEISDNPSKNQTVSIGLKGSIGYIPPEHMNG-QVSILGDIYSYGILLLEMFTGKRPTGDMFKDDFSIHMFV 620 (717)
Q Consensus 542 ~Dfg~~~~~~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~-~~~~~sDvwslG~vl~elltg~~p~~~~~~~~~~~~~~~ 620 (717)
+|||.+.....................|++.|+|||++.+ .++.++|||||||++|+|++|+.||...........
T Consensus 150 ~Dfg~a~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~g~~pf~~~~~~~~~~~--- 226 (296)
T 4hgt_A 150 IDFGLAKKYRDARTHQHIPYRENKNLTGTARYASINTHLGIEQSRRDDLESLGYVLMYFNLGSLPWQGLKAATKRQK--- 226 (296)
T ss_dssp CCCTTCEECBCTTTCCBCCCCCSCCCCSCGGGCCHHHHTTCCCCHHHHHHHHHHHHHHHHHSSCTTSSCCCSSSSSH---
T ss_pred ecCccceeccCcccCccCCCCcccccCCCccccchHHhcCCCCCchhHHHHHHHHHHHHhcCCCCCcccchhhhhhh---
Confidence 9999998764332222112223345679999999999665 589999999999999999999999976533211000
Q ss_pred HhcCChhhhhhcCCCCCCCCCCcHHHHHHHHHHHHHHhhhhhhhcchhhhHHHHHHHHHHhhccCCCCcCCCCCHHHHHH
Q 005045 621 SMALPDHVMDILDPSMPLDEENDEEQIEEVIEEKEMMIHIDLEVNTKNKLEECFVSVLRIGLMCSTTSPRERIAMNVVVN 700 (717)
Q Consensus 621 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~cl~~~p~~Rps~~eil~ 700 (717)
...+.... .... .......++..+.+++.+||+.+|++|||++||++
T Consensus 227 --------------------------~~~~~~~~-~~~~------~~~~~~~~~~~l~~li~~~l~~~p~~Rpt~~~l~~ 273 (296)
T 4hgt_A 227 --------------------------YERISEKK-MSTP------IEVLCKGYPSEFATYLNFCRSLRFDDKPDYSYLRQ 273 (296)
T ss_dssp --------------------------HHHHHHHH-HHSC------HHHHTTTSCHHHHHHHHHHHTSCTTCCCCHHHHHH
T ss_pred --------------------------hhhhhccc-ccch------hhhhhccCCHHHHHHHHHHHhcCCCCCCCHHHHHH
Confidence 00000000 0000 00011223567899999999999999999999999
Q ss_pred HHHHHHHHHHh
Q 005045 701 NLKTIRNCFLE 711 (717)
Q Consensus 701 ~l~~i~~~~~~ 711 (717)
.|+++.++...
T Consensus 274 ~l~~~~~~~~~ 284 (296)
T 4hgt_A 274 LFRNLFHRQGF 284 (296)
T ss_dssp HHHHHHHHHTC
T ss_pred HHHHHHHHhCC
Confidence 99999877643
No 106
>2pmi_A Negative RE, cyclin-dependent protein kinase PHO85; cyclin-dependent kinase, signaling protein,transfera cycle complex; HET: MES AGS; 2.90A {Saccharomyces cerevisiae} PDB: 2pk9_A*
Probab=100.00 E-value=2.7e-39 Score=336.15 Aligned_cols=279 Identities=24% Similarity=0.368 Sum_probs=186.7
Q ss_pred cccccccccccCcccccceEEEEeC-CCchhhhHHhHhhh-hhHHHHHHHHHHHHhcCCCCceeEEEEeeccccCCCCce
Q 005045 387 STDNFSKENLIGTGSFGSVYKGTLG-DGTIVAIKVLKLQQ-QGALKSFIDECNALKSTRHRNILRVITACSSVDLEGNDF 464 (717)
Q Consensus 387 ~~~~y~~~~~ig~g~~g~v~~~~~~-~~~~vavK~~~~~~-~~~~~~~~~e~~~l~~l~h~ni~~~~~~~~~~~~~~~~~ 464 (717)
..++|++.+.||+|+||.||+|.++ +|+.||+|++.... ......+.+|++++++++||||+++++++ ...+.
T Consensus 3 ~~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~E~~~l~~l~hp~iv~~~~~~-----~~~~~ 77 (317)
T 2pmi_A 3 SSSQFKQLEKLGNGTYATVYKGLNKTTGVYVALKEVKLDSEEGTPSTAIREISLMKELKHENIVRLYDVI-----HTENK 77 (317)
T ss_dssp ----------------CEEEEEECSSSCCEEEEEEEECCSTTCSCHHHHHHHHHHTTCCBTTBCCEEEEE-----CCTTE
T ss_pred cccceeEeeEECCCCCEEEEEEEECCCCcEEEEEEeecccccccHHHHHHHHHHHHhcCCCCcceEEEEE-----EECCe
Confidence 4568999999999999999999965 78999999986543 22346788999999999999999999995 44568
Q ss_pred EEEEEecCCCCChhhhccCCCCCcccccccCHHHHHHHHHHHHHHHHHHHhcCCCCeeecCCCCCCEEeCCCCceEEeee
Q 005045 465 KALVFEFMSNGNLDQWLHPSPAEHYQFKKLSVIQRLNIAIDVASALDYLHHHCDTPIAHCDLKPSNVLLDKDMTAHVGDF 544 (717)
Q Consensus 465 ~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~dlkp~NIll~~~~~~kl~Df 544 (717)
.++||||++ ++|.+++....... ....+++..+..++.||+.||+|||+. ||+||||||+||+++.+|.+||+||
T Consensus 78 ~~lv~e~~~-~~L~~~l~~~~~~~-~~~~~~~~~~~~~~~qi~~aL~~lH~~---~ivH~Dlkp~NIl~~~~~~~kl~Df 152 (317)
T 2pmi_A 78 LTLVFEFMD-NDLKKYMDSRTVGN-TPRGLELNLVKYFQWQLLQGLAFCHEN---KILHRDLKPQNLLINKRGQLKLGDF 152 (317)
T ss_dssp EEEEEECCC-CBHHHHHHHHHSSS-CCCCCCHHHHHHHHHHHHHHHHHHHHT---TEECCCCCGGGEEECTTCCEEECCC
T ss_pred EEEEEEecC-CCHHHHHHhccccc-cccCCCHHHHHHHHHHHHHHHHHHHHC---CeeeCCCChHHeEEcCCCCEEECcC
Confidence 999999997 69998876421100 114589999999999999999999998 9999999999999999999999999
Q ss_pred ccchhcccccCCCCCCcceeecccccccccCCCccCC--CCCcccchhhHHHHHHHHHhCCCCCCCCCCCchhhhHHHHh
Q 005045 545 GLAKFLFEISDNPSKNQTVSIGLKGSIGYIPPEHMNG--QVSILGDIYSYGILLLEMFTGKRPTGDMFKDDFSIHMFVSM 622 (717)
Q Consensus 545 g~~~~~~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~--~~~~~sDvwslG~vl~elltg~~p~~~~~~~~~~~~~~~~~ 622 (717)
|.+...... ........+|+.|+|||++.+ .++.++|||||||++|+|++|..||......+. .......
T Consensus 153 g~~~~~~~~-------~~~~~~~~~t~~y~aPE~~~~~~~~~~~~DiwslG~il~el~~g~~pf~~~~~~~~-~~~i~~~ 224 (317)
T 2pmi_A 153 GLARAFGIP-------VNTFSSEVVTLWYRAPDVLMGSRTYSTSIDIWSCGCILAEMITGKPLFPGTNDEEQ-LKLIFDI 224 (317)
T ss_dssp SSCEETTSC-------CCCCCCCCSCCTTCCHHHHTTCCCCCTHHHHHHHHHHHHHHHHSSCSCCCSSHHHH-HHHHHHH
T ss_pred ccceecCCC-------cccCCCCcccccccCchHhhCCCCCCcHHHHHHHHHHHHHHHhCCCCCCCCChHHH-HHHHHHH
Confidence 999865211 111223468999999999755 479999999999999999999999976533221 1111110
Q ss_pred -c-CChh-hhhh-----cCCCCCCCCCCcHHHHHHHHHHHHHHhhhhhhhcchhhhHHHHHHHHHHhhccCCCCcCCCCC
Q 005045 623 -A-LPDH-VMDI-----LDPSMPLDEENDEEQIEEVIEEKEMMIHIDLEVNTKNKLEECFVSVLRIGLMCSTTSPRERIA 694 (717)
Q Consensus 623 -~-~~~~-~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~cl~~~p~~Rps 694 (717)
. .+.. +... ..+........ ...+.+ .. ......+..+.+++.+||+.||++|||
T Consensus 225 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~---------~~-----~~~~~~~~~l~~li~~~L~~dP~~Rpt 287 (317)
T 2pmi_A 225 MGTPNESLWPSVTKLPKYNPNIQQRPPR---DLRQVL---------QP-----HTKEPLDGNLMDFLHGLLQLNPDMRLS 287 (317)
T ss_dssp HCSCCTTTCGGGGGCTTCCTTCCCCCCC---CSHHHH---------GG-----GCSSCCCHHHHHHHHHHSCSSGGGSCC
T ss_pred hCCCChhHhhhhhhhhhcccccccccch---hHHHhh---------cc-----cccccCCHHHHHHHHHHCCCCcccCCC
Confidence 0 0110 0000 00111100000 000000 00 001122556889999999999999999
Q ss_pred HHHHHH
Q 005045 695 MNVVVN 700 (717)
Q Consensus 695 ~~eil~ 700 (717)
++|+++
T Consensus 288 ~~e~l~ 293 (317)
T 2pmi_A 288 AKQALH 293 (317)
T ss_dssp HHHHTT
T ss_pred HHHHhC
Confidence 999985
No 107
>2v62_A Serine/threonine-protein kinase VRK2; transferase, ATP-binding, membrane, nucleotide-binding, TRAN; 1.7A {Homo sapiens}
Probab=100.00 E-value=1.6e-39 Score=342.09 Aligned_cols=271 Identities=18% Similarity=0.249 Sum_probs=201.3
Q ss_pred ccccccccccCcccccceEEEEeC----CCchhhhHHhHhhhhh-----------HHHHHHHHHHHHhcCCCCceeEEEE
Q 005045 388 TDNFSKENLIGTGSFGSVYKGTLG----DGTIVAIKVLKLQQQG-----------ALKSFIDECNALKSTRHRNILRVIT 452 (717)
Q Consensus 388 ~~~y~~~~~ig~g~~g~v~~~~~~----~~~~vavK~~~~~~~~-----------~~~~~~~e~~~l~~l~h~ni~~~~~ 452 (717)
.++|++.+.||+|+||.||+|.+. ++..+|+|+....... ....+.+|+..++.+.||||+++++
T Consensus 36 ~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~~~~~aiK~~~~~~~~~~~e~~~~~~~~~~~~~~e~~~~~~l~h~ni~~~~~ 115 (345)
T 2v62_A 36 GNQWVLGKKIGSGGFGLIYLAFPTNKPEKDARHVVKVEYQENGPLFSELKFYQRVAKKDCIKKWIERKQLDYLGIPLFYG 115 (345)
T ss_dssp SCEEEEEEEC------CEEEEEESSSCGGGCCEEEEEEECC-CHHHHHHHHHHHHCCHHHHHHHHHHHTCSCCCCCCEEE
T ss_pred CceEEEEeeEeecCCeEEEEEEecCCCCccceEEEEeeecCCcchHHHHHHHHHHhhhHHHHHHHhhccccccCcceeec
Confidence 578999999999999999999965 5778899987543211 1234678889999999999999999
Q ss_pred eeccccCCCCceEEEEEecCCCCChhhhccCCCCCcccccccCHHHHHHHHHHHHHHHHHHHhcCCCCeeecCCCCCCEE
Q 005045 453 ACSSVDLEGNDFKALVFEFMSNGNLDQWLHPSPAEHYQFKKLSVIQRLNIAIDVASALDYLHHHCDTPIAHCDLKPSNVL 532 (717)
Q Consensus 453 ~~~~~~~~~~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~dlkp~NIl 532 (717)
++... ..+....++||||+ +++|.+++... ..+++..++.++.||+.||+|||+. +|+||||||+||+
T Consensus 116 ~~~~~-~~~~~~~~lv~e~~-~~~L~~~l~~~-------~~~~~~~~~~i~~qi~~aL~~LH~~---~ivH~Dlkp~NIl 183 (345)
T 2v62_A 116 SGLTE-FKGRSYRFMVMERL-GIDLQKISGQN-------GTFKKSTVLQLGIRMLDVLEYIHEN---EYVHGDIKAANLL 183 (345)
T ss_dssp EEEEE-SSSCEEEEEEEECE-EEEHHHHCBGG-------GBCCHHHHHHHHHHHHHHHHHHHHT---TEECSCCSGGGEE
T ss_pred ccccc-cCCCcEEEEEEecc-CCCHHHHHHhc-------CCCCHHHHHHHHHHHHHHHHHHHhC---CeeCCCcCHHHEE
Confidence 87553 23466899999999 99999999754 4789999999999999999999998 9999999999999
Q ss_pred eCCCC--ceEEeeeccchhcccccCCCCCCcceeecccccccccCCCccCCC-CCcccchhhHHHHHHHHHhCCCCCCCC
Q 005045 533 LDKDM--TAHVGDFGLAKFLFEISDNPSKNQTVSIGLKGSIGYIPPEHMNGQ-VSILGDIYSYGILLLEMFTGKRPTGDM 609 (717)
Q Consensus 533 l~~~~--~~kl~Dfg~~~~~~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~-~~~~sDvwslG~vl~elltg~~p~~~~ 609 (717)
++.++ .+||+|||.++.+..................|+..|+|||++.+. ++.++|||||||++|||++|..||...
T Consensus 184 l~~~~~~~~kL~Dfg~a~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Di~slG~il~ell~g~~pf~~~ 263 (345)
T 2v62_A 184 LGYKNPDQVYLADYGLSYRYCPNGNHKQYQENPRKGHNGTIEFTSLDAHKGVALSRRSDVEILGYCMLRWLCGKLPWEQN 263 (345)
T ss_dssp EESSSTTSEEECCCTTCEESSGGGCCCCCCCCGGGCSCSCTTTCCHHHHHTCCCCHHHHHHHHHHHHHHHHHSSCTTGGG
T ss_pred EccCCCCcEEEEeCCCceecccccccccchhccccccCCCccccCHHHhcCCCCCchhhHHHHHHHHHHHHhCCCCcccc
Confidence 99877 999999999987643332222222223456799999999997654 899999999999999999999999643
Q ss_pred CCCchhhhHH---HHhcCChhhhhhcCCCCCCCCCCcHHHHHHHHHHHHHHhhhhhhhcchhhhHHHHHHHHHHhhccCC
Q 005045 610 FKDDFSIHMF---VSMALPDHVMDILDPSMPLDEENDEEQIEEVIEEKEMMIHIDLEVNTKNKLEECFVSVLRIGLMCST 686 (717)
Q Consensus 610 ~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~cl~ 686 (717)
.......... ....++..+.... ....++..+.+++.+||+
T Consensus 264 ~~~~~~~~~~~~~~~~~~~~~~~~~~------------------------------------~~~~~~~~l~~li~~~l~ 307 (345)
T 2v62_A 264 LKDPVAVQTAKTNLLDELPQSVLKWA------------------------------------PSGSSCCEIAQFLVCAHS 307 (345)
T ss_dssp TTCHHHHHHHHHHHHHTTTHHHHHHS------------------------------------CTTSCCHHHHHHHHHHHT
T ss_pred ccccHHHHHHHHhhcccccHHHHhhc------------------------------------cccccHHHHHHHHHHHhh
Confidence 2222111111 1111111111111 011336678999999999
Q ss_pred CCcCCCCCHHHHHHHHHHHH
Q 005045 687 TSPRERIAMNVVVNNLKTIR 706 (717)
Q Consensus 687 ~~p~~Rps~~eil~~l~~i~ 706 (717)
.+|++|||++||++.|+.+.
T Consensus 308 ~dp~~Rps~~~l~~~L~~~~ 327 (345)
T 2v62_A 308 LAYDEKPNYQALKKILNPHG 327 (345)
T ss_dssp CCTTCCCCHHHHHHHHCTTC
T ss_pred cCcccCCCHHHHHHHHhccC
Confidence 99999999999999998654
No 108
>3poz_A Epidermal growth factor receptor; kinase domain, anti-oncogene, ATP-binding, cell cycle, disea mutation, glycoprotein, membrane, nucleotide-binding; HET: 03P; 1.50A {Homo sapiens} SCOP: d.144.1.7 PDB: 2itx_A* 2ity_A* 2j5f_A* 2j6m_A* 2itw_A* 1m14_A 1m17_A* 3vjo_A* 2gs6_A* 2gs2_A* 2rf9_A 4g5j_A* 1xkk_A* 2eb2_A 3gop_A 2eb3_A* 2itn_A* 2ito_A* 2itp_A* 2itq_A* ...
Probab=100.00 E-value=2.7e-39 Score=337.70 Aligned_cols=259 Identities=24% Similarity=0.407 Sum_probs=197.2
Q ss_pred cccccccccccCcccccceEEEEeC-CCchh----hhHHhHhh-hhhHHHHHHHHHHHHhcCCCCceeEEEEeeccccCC
Q 005045 387 STDNFSKENLIGTGSFGSVYKGTLG-DGTIV----AIKVLKLQ-QQGALKSFIDECNALKSTRHRNILRVITACSSVDLE 460 (717)
Q Consensus 387 ~~~~y~~~~~ig~g~~g~v~~~~~~-~~~~v----avK~~~~~-~~~~~~~~~~e~~~l~~l~h~ni~~~~~~~~~~~~~ 460 (717)
..++|++.++||+|+||.||+|++. +++.+ |+|.+... .....+.+.+|+.++++++||||+++++++..
T Consensus 13 ~~~~y~~~~~lG~G~~g~Vy~~~~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~---- 88 (327)
T 3poz_A 13 KETEFKKIKVLGSGAFGTVYKGLWIPEGEKVKIPVAIKELREATSPKANKEILDEAYVMASVDNPHVCRLLGICLT---- 88 (327)
T ss_dssp CGGGEEEEEEEEEETTEEEEEEEECC----CCEEEEEEEC-------CHHHHHHHHHHHHHCCBTTBCCEEEEEES----
T ss_pred CHHHcccceEEeeCCCeEEEEEEEcCCCceEEEEEEEeecccccCHHHHHHHHHHHHHHHhCCCCCEeEEEEEEec----
Confidence 3568999999999999999999954 55554 77776533 23445788999999999999999999999743
Q ss_pred CCceEEEEEecCCCCChhhhccCCCCCcccccccCHHHHHHHHHHHHHHHHHHHhcCCCCeeecCCCCCCEEeCCCCceE
Q 005045 461 GNDFKALVFEFMSNGNLDQWLHPSPAEHYQFKKLSVIQRLNIAIDVASALDYLHHHCDTPIAHCDLKPSNVLLDKDMTAH 540 (717)
Q Consensus 461 ~~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~dlkp~NIll~~~~~~k 540 (717)
...++|+|++++++|.+++.... ..+++..++.++.||+.||+|||+. +|+||||||+||+++.++.+|
T Consensus 89 --~~~~~v~e~~~~g~L~~~l~~~~------~~~~~~~~~~~~~qi~~~l~~LH~~---~ivH~Dikp~NIll~~~~~~k 157 (327)
T 3poz_A 89 --STVQLITQLMPFGCLLDYVREHK------DNIGSQYLLNWCVQIAKGMNYLEDR---RLVHRDLAARNVLVKTPQHVK 157 (327)
T ss_dssp --SSEEEEEECCTTCBHHHHHHHST------TSCCHHHHHHHHHHHHHHHHHHHHT---TCCCSCCCGGGEEEEETTEEE
T ss_pred --CCeEEEEEecCCCcHHHHHHhcC------CCCCHHHHHHHHHHHHHHHHHHhhC---CeeCCCCChheEEECCCCCEE
Confidence 24789999999999999987543 5689999999999999999999998 999999999999999999999
Q ss_pred EeeeccchhcccccCCCCCCcceeecccccccccCCCccC-CCCCcccchhhHHHHHHHHHh-CCCCCCCCCCCchhhhH
Q 005045 541 VGDFGLAKFLFEISDNPSKNQTVSIGLKGSIGYIPPEHMN-GQVSILGDIYSYGILLLEMFT-GKRPTGDMFKDDFSIHM 618 (717)
Q Consensus 541 l~Dfg~~~~~~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~-~~~~~~sDvwslG~vl~ellt-g~~p~~~~~~~~~~~~~ 618 (717)
|+|||.++...... .........+|..|+|||++. +.++.++|||||||++|||++ |..||........ ..
T Consensus 158 l~Dfg~a~~~~~~~-----~~~~~~~~~~t~~y~aPE~~~~~~~~~~~Di~slG~il~ellt~g~~p~~~~~~~~~--~~ 230 (327)
T 3poz_A 158 ITDFGLAKLLGAEE-----KEYHAEGGKVPIKWMALESILHRIYTHQSDVWSYGVTVWELMTFGSKPYDGIPASEI--SS 230 (327)
T ss_dssp ECCTTHHHHHTTTC-----C-------CCCGGGSCHHHHHHCCCCHHHHHHHHHHHHHHHHTTSCCTTTTCCGGGH--HH
T ss_pred EccCcceeEccCCc-----ccccccCCCccccccChHHhccCCCCchhhhhhhHHHHHHHHhcCCCCccCCCHHHH--HH
Confidence 99999998762211 112223345688999999964 458999999999999999999 9999976533221 11
Q ss_pred HHHhcCChhhhhhcCCCCCCCCCCcHHHHHHHHHHHHHHhhhhhhhcchhhhHHHHHHHHHHhhccCCCCcCCCCCHHHH
Q 005045 619 FVSMALPDHVMDILDPSMPLDEENDEEQIEEVIEEKEMMIHIDLEVNTKNKLEECFVSVLRIGLMCSTTSPRERIAMNVV 698 (717)
Q Consensus 619 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~cl~~~p~~Rps~~ei 698 (717)
... ...... .+..++..+.+++.+||+.+|++|||++|+
T Consensus 231 ~~~------------~~~~~~-----------------------------~~~~~~~~~~~li~~~l~~~p~~Rps~~el 269 (327)
T 3poz_A 231 ILE------------KGERLP-----------------------------QPPICTIDVYMIMVKCWMIDADSRPKFREL 269 (327)
T ss_dssp HHH------------TTCCCC-----------------------------CCTTBCHHHHHHHHHHTCSCGGGSCCHHHH
T ss_pred HHH------------cCCCCC-----------------------------CCccCCHHHHHHHHHHcCCChhhCCCHHHH
Confidence 111 100000 111225567899999999999999999999
Q ss_pred HHHHHHHHHH
Q 005045 699 VNNLKTIRNC 708 (717)
Q Consensus 699 l~~l~~i~~~ 708 (717)
++.|+.+...
T Consensus 270 l~~l~~~~~~ 279 (327)
T 3poz_A 270 IIEFSKMARD 279 (327)
T ss_dssp HHHHHHHHTS
T ss_pred HHHHHHHHhh
Confidence 9999998754
No 109
>3uzp_A CKI-delta, CKID, casein kinase I isoform delta; CK1D, inhibitor, PF670462, transferase-transferase I complex; HET: 0CK; 1.94A {Homo sapiens} PDB: 3uys_A* 3uyt_A* 1cki_A 1ckj_A
Probab=100.00 E-value=4.4e-39 Score=331.51 Aligned_cols=273 Identities=21% Similarity=0.266 Sum_probs=208.5
Q ss_pred cccccccccccCcccccceEEEEe-CCCchhhhHHhHhhhhhHHHHHHHHHHHHhcCCCCceeEEEEeeccccCCCCceE
Q 005045 387 STDNFSKENLIGTGSFGSVYKGTL-GDGTIVAIKVLKLQQQGALKSFIDECNALKSTRHRNILRVITACSSVDLEGNDFK 465 (717)
Q Consensus 387 ~~~~y~~~~~ig~g~~g~v~~~~~-~~~~~vavK~~~~~~~~~~~~~~~e~~~l~~l~h~ni~~~~~~~~~~~~~~~~~~ 465 (717)
..++|++.+.||+|++|.||+|++ .+++.||+|++..... ...+.+|+++++.+.|++++..+..+. ......
T Consensus 7 ~~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~--~~~~~~e~~~l~~l~~~~~i~~~~~~~----~~~~~~ 80 (296)
T 3uzp_A 7 VGNRYRLGRKIGSGSFGDIYLGTDIAAGEEVAIKLECVKTK--HPQLHIESKIYKMMQGGVGIPTIRWCG----AEGDYN 80 (296)
T ss_dssp ETTTEEEEEEEEEETTEEEEEEEETTTTEEEEEEEEESCSS--CCHHHHHHHHHHHHTTSTTCCCEEEEE----EETTEE
T ss_pred eccEEEEEEEEccCCCeEEEEEEEcCCCcEEEEEEecCCcc--hhHHHHHHHHHHHhhcCCCCCcccccc----CCCCce
Confidence 467999999999999999999996 4899999998764432 356889999999999888776666652 345688
Q ss_pred EEEEecCCCCChhhhccCCCCCcccccccCHHHHHHHHHHHHHHHHHHHhcCCCCeeecCCCCCCEEeC---CCCceEEe
Q 005045 466 ALVFEFMSNGNLDQWLHPSPAEHYQFKKLSVIQRLNIAIDVASALDYLHHHCDTPIAHCDLKPSNVLLD---KDMTAHVG 542 (717)
Q Consensus 466 ~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~dlkp~NIll~---~~~~~kl~ 542 (717)
++||||+ +++|.+++.... ..+++..+..++.||+.||+|||+. +|+||||||+||+++ .++.+||+
T Consensus 81 ~lv~e~~-~~~L~~~~~~~~------~~~~~~~~~~i~~qi~~~l~~lH~~---~ivH~dlkp~NIl~~~~~~~~~~kl~ 150 (296)
T 3uzp_A 81 VMVMELL-GPSLEDLFNFCS------RKFSLKTVLLLADQMISRIEYIHSK---NFIHRDVKPDNFLMGLGKKGNLVYII 150 (296)
T ss_dssp EEEEECC-CCBHHHHHHHTT------TCCCHHHHHHHHHHHHHHHHHHHHT---TEECSCCCGGGEEECCGGGTTCEEEC
T ss_pred EEEEEec-CCCHHHHHHhhc------cCCCHHHHHHHHHHHHHHHHHHHhC---CeeeCCCCHHHeEEecCCCCCeEEEe
Confidence 9999999 899999987432 4689999999999999999999998 999999999999994 78899999
Q ss_pred eeccchhcccccCCCCCCcceeecccccccccCCCccCC-CCCcccchhhHHHHHHHHHhCCCCCCCCCCCchhhhHHHH
Q 005045 543 DFGLAKFLFEISDNPSKNQTVSIGLKGSIGYIPPEHMNG-QVSILGDIYSYGILLLEMFTGKRPTGDMFKDDFSIHMFVS 621 (717)
Q Consensus 543 Dfg~~~~~~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~-~~~~~sDvwslG~vl~elltg~~p~~~~~~~~~~~~~~~~ 621 (717)
|||.+.....................|++.|+|||++.+ .++.++|||||||++|+|++|..||..........
T Consensus 151 Dfg~~~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~g~~pf~~~~~~~~~~----- 225 (296)
T 3uzp_A 151 DFGLAKKYRDARTHQHIPYRENKNLTGTARYASINTHLGIEQSRRDDLESLGYVLMYFNLGSLPWQGLKAATKRQ----- 225 (296)
T ss_dssp CCTTCEECBCTTTCCBCCCCCSCCCCSCTTTCCHHHHTTCCCCHHHHHHHHHHHHHHHHHSSCTTSSCCCSSSSS-----
T ss_pred eCCCcccccccccccccccccccccccccccCChhhhcCCCCCcchhhHHHHHHHHHHHhCCCCCCCcCchhhhh-----
Confidence 999998764332222111222345679999999999765 58999999999999999999999997643221100
Q ss_pred hcCChhhhhhcCCCCCCCCCCcHHHHHHHHHHHHHHhhhhhhhcchhhhHHHHHHHHHHhhccCCCCcCCCCCHHHHHHH
Q 005045 622 MALPDHVMDILDPSMPLDEENDEEQIEEVIEEKEMMIHIDLEVNTKNKLEECFVSVLRIGLMCSTTSPRERIAMNVVVNN 701 (717)
Q Consensus 622 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~cl~~~p~~Rps~~eil~~ 701 (717)
....+.... .... .......++..+.+++.+||+.+|++|||+.||++.
T Consensus 226 ------------------------~~~~~~~~~-~~~~------~~~~~~~~~~~l~~li~~~l~~dp~~Rps~~~l~~~ 274 (296)
T 3uzp_A 226 ------------------------KYERISEKK-MSTP------IEVLCKGYPSEFATYLNFCRSLRFDDKPDYSYLRQL 274 (296)
T ss_dssp ------------------------HHHHHHHHH-HHSC------HHHHTTTSCHHHHHHHHHHHTSCTTCCCCHHHHHHH
T ss_pred ------------------------hhhhhcccc-cCCc------hHHHHhhCCHHHHHHHHHHHhcCcCcCCCHHHHHHH
Confidence 000000000 0000 000112235678999999999999999999999999
Q ss_pred HHHHHHHHHh
Q 005045 702 LKTIRNCFLE 711 (717)
Q Consensus 702 l~~i~~~~~~ 711 (717)
|+++..+...
T Consensus 275 l~~~~~~~~~ 284 (296)
T 3uzp_A 275 FRNLFHRQGF 284 (296)
T ss_dssp HHHHHHHTTC
T ss_pred HHHHHHhcCC
Confidence 9999876543
No 110
>3f3z_A Calcium/calmodulin-dependent protein kinase with domain and 4 calmodulin like EF...; calcium dependent protein kinase; HET: SEP DRK; 1.84A {Cryptosporidium parvum iowa II} PDB: 2qg5_A*
Probab=100.00 E-value=6.6e-39 Score=326.80 Aligned_cols=253 Identities=24% Similarity=0.300 Sum_probs=203.6
Q ss_pred ccccccccccccCcccccceEEEEeC-CCchhhhHHhHhhhhhHHHHHHHHHHHHhcCCCCceeEEEEeeccccCCCCce
Q 005045 386 KSTDNFSKENLIGTGSFGSVYKGTLG-DGTIVAIKVLKLQQQGALKSFIDECNALKSTRHRNILRVITACSSVDLEGNDF 464 (717)
Q Consensus 386 ~~~~~y~~~~~ig~g~~g~v~~~~~~-~~~~vavK~~~~~~~~~~~~~~~e~~~l~~l~h~ni~~~~~~~~~~~~~~~~~ 464 (717)
...++|++.+.||+|+||.||+|.++ +++.+|+|.+........+.+.+|++++++++||||+++++++. +.+.
T Consensus 6 ~~~~~y~~~~~lg~G~~g~V~~~~~~~~~~~~a~k~~~~~~~~~~~~~~~E~~~l~~l~h~~i~~~~~~~~-----~~~~ 80 (277)
T 3f3z_A 6 DINQYYTLENTIGRGSWGEVKIAVQKGTRIRRAAKKIPKYFVEDVDRFKQEIEIMKSLDHPNIIRLYETFE-----DNTD 80 (277)
T ss_dssp CHHHHEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEEGGGCSCHHHHHHHHHHHHTCCCTTBCCEEEEEE-----CSSE
T ss_pred hhhhhEEeeeEEeecCCEEEEEEEeCCCCcEEEEEeehhhccchHHHHHHHHHHHHhCCCCCEeeEEEEEe-----cCCe
Confidence 34678999999999999999999965 67789999987665555678999999999999999999999953 4568
Q ss_pred EEEEEecCCCCChhhhccCCCCCcccccccCHHHHHHHHHHHHHHHHHHHhcCCCCeeecCCCCCCEEe---CCCCceEE
Q 005045 465 KALVFEFMSNGNLDQWLHPSPAEHYQFKKLSVIQRLNIAIDVASALDYLHHHCDTPIAHCDLKPSNVLL---DKDMTAHV 541 (717)
Q Consensus 465 ~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~dlkp~NIll---~~~~~~kl 541 (717)
.++||||+++++|.+++... ..+++..+..++.|++.|++|||+. +++||||||+||++ +.++.+||
T Consensus 81 ~~lv~e~~~~~~L~~~~~~~-------~~~~~~~~~~i~~~i~~~l~~lH~~---~i~H~dlkp~Nil~~~~~~~~~~~l 150 (277)
T 3f3z_A 81 IYLVMELCTGGELFERVVHK-------RVFRESDAARIMKDVLSAVAYCHKL---NVAHRDLKPENFLFLTDSPDSPLKL 150 (277)
T ss_dssp EEEEEECCCSCBHHHHHHHH-------CSCCHHHHHHHHHHHHHHHHHHHHT---TEECCCCSGGGEEESSSSTTCCEEE
T ss_pred EEEEEeccCCCcHHHHHHHc-------CCCCHHHHHHHHHHHHHHHHHHHHC---CccCCCCCHHHEEEecCCCCCcEEE
Confidence 99999999999999988644 5689999999999999999999998 99999999999999 78889999
Q ss_pred eeeccchhcccccCCCCCCcceeecccccccccCCCccCCCCCcccchhhHHHHHHHHHhCCCCCCCCCCCchhhhHHHH
Q 005045 542 GDFGLAKFLFEISDNPSKNQTVSIGLKGSIGYIPPEHMNGQVSILGDIYSYGILLLEMFTGKRPTGDMFKDDFSIHMFVS 621 (717)
Q Consensus 542 ~Dfg~~~~~~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~sDvwslG~vl~elltg~~p~~~~~~~~~~~~~~~~ 621 (717)
+|||.+..... ........|++.|+|||++.+.++.++|||||||++|+|++|..||....... ......
T Consensus 151 ~Dfg~~~~~~~--------~~~~~~~~~t~~y~aPE~~~~~~~~~~Di~slG~~l~~l~~g~~p~~~~~~~~--~~~~~~ 220 (277)
T 3f3z_A 151 IDFGLAARFKP--------GKMMRTKVGTPYYVSPQVLEGLYGPECDEWSAGVMMYVLLCGYPPFSAPTDSE--VMLKIR 220 (277)
T ss_dssp CCCTTCEECCT--------TSCBCCCCSCTTTCCHHHHTTCBCTTHHHHHHHHHHHHHHHSSCSSCCSSHHH--HHHHHH
T ss_pred EecccceeccC--------ccchhccCCCCCccChHHhcccCCchhhehhHHHHHHHHHHCCCCCCCCCHHH--HHHHHH
Confidence 99999976521 11223356899999999998889999999999999999999999997542211 111110
Q ss_pred hcCChhhhhhcCCCCCCCCCCcHHHHHHHHHHHHHHhhhhhhhcchhhhHHHHHHHHHHhhccCCCCcCCCCCHHHHHHH
Q 005045 622 MALPDHVMDILDPSMPLDEENDEEQIEEVIEEKEMMIHIDLEVNTKNKLEECFVSVLRIGLMCSTTSPRERIAMNVVVNN 701 (717)
Q Consensus 622 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~cl~~~p~~Rps~~eil~~ 701 (717)
........ .....++..+.+++.+||+.+|++|||+.|+++.
T Consensus 221 -----------~~~~~~~~---------------------------~~~~~~~~~~~~li~~~l~~dp~~R~s~~~~l~h 262 (277)
T 3f3z_A 221 -----------EGTFTFPE---------------------------KDWLNVSPQAESLIRRLLTKSPKQRITSLQALEH 262 (277)
T ss_dssp -----------HCCCCCCH---------------------------HHHTTSCHHHHHHHHHHTCSSTTTSCCHHHHTTS
T ss_pred -----------hCCCCCCc---------------------------hhhhcCCHHHHHHHHHHccCChhhCcCHHHHhcC
Confidence 00000000 0001235678899999999999999999999863
No 111
>3g2f_A Bone morphogenetic protein receptor type-2; kinase, structural genomics, structural genomics consortium, ATP-binding, disease mutation; HET: ADP; 2.35A {Homo sapiens}
Probab=100.00 E-value=3.2e-39 Score=338.92 Aligned_cols=300 Identities=23% Similarity=0.306 Sum_probs=206.8
Q ss_pred ccccccccccccccCcccccceEEEEeCCCchhhhHHhHhhhhhHHHHHHHHHHHHhcCCCCceeEEEEeeccccCCCCc
Q 005045 384 ISKSTDNFSKENLIGTGSFGSVYKGTLGDGTIVAIKVLKLQQQGALKSFIDECNALKSTRHRNILRVITACSSVDLEGND 463 (717)
Q Consensus 384 ~~~~~~~y~~~~~ig~g~~g~v~~~~~~~~~~vavK~~~~~~~~~~~~~~~e~~~l~~l~h~ni~~~~~~~~~~~~~~~~ 463 (717)
.....++|++.+.||+|+||.||+|+. +++.||+|++....... .....|+..+..++||||+++++.+.........
T Consensus 8 ~~~~~~~y~~~~~lg~G~~g~Vy~~~~-~~~~vavK~~~~~~~~~-~~~e~~~~~~~~~~h~~i~~~~~~~~~~~~~~~~ 85 (336)
T 3g2f_A 8 PSLDLDNLKLLELIGRGRYGAVYKGSL-DERPVAVKVFSFANRQN-FINEKNIYRVPLMEHDNIARFIVGDERVTADGRM 85 (336)
T ss_dssp -CCCTTSEEEEEEEEECSSEEEEEEEE-TTEEEEEEEEEGGGHHH-HHHHHHHHTSTTCCCTTBCCEEEEEEEECTTSCE
T ss_pred CCcChHHhheeeecccCCCeEEEEEEE-CCeEEEEEEeeccchhh-HHHHHHHHHHHhccCcchhhheecccccccCCCc
Confidence 344578999999999999999999987 68999999986543221 1222344445568999999999876554455666
Q ss_pred eEEEEEecCCCCChhhhccCCCCCcccccccCHHHHHHHHHHHHHHHHHHHhcC------CCCeeecCCCCCCEEeCCCC
Q 005045 464 FKALVFEFMSNGNLDQWLHPSPAEHYQFKKLSVIQRLNIAIDVASALDYLHHHC------DTPIAHCDLKPSNVLLDKDM 537 (717)
Q Consensus 464 ~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~i~~~i~~~l~~LH~~~------~~~ivH~dlkp~NIll~~~~ 537 (717)
..++||||+++++|.+++... ..++..+..++.||+.||+|||+.+ .++|+||||||+||+++.++
T Consensus 86 ~~~lv~e~~~~g~L~~~l~~~--------~~~~~~~~~i~~qi~~~L~~LH~~~~~~~~~~~~ivH~Dikp~Nill~~~~ 157 (336)
T 3g2f_A 86 EYLLVMEYYPNGSLXKYLSLH--------TSDWVSSCRLAHSVTRGLAYLHTELPRGDHYKPAISHRDLNSRNVLVKNDG 157 (336)
T ss_dssp EEEEEECCCTTCBHHHHHHHC--------CBCHHHHHHHHHHHHHHHHHHHCCBCCGGGCBCCEECSSCSGGGEEECTTS
T ss_pred eEEEEEecCCCCcHHHHHhhc--------ccchhHHHHHHHHHHHHHHHHHhhhccccccccceeecccccceEEEcCCC
Confidence 789999999999999999643 3588899999999999999999852 12899999999999999999
Q ss_pred ceEEeeeccchhcccccCCC-CCCcceeecccccccccCCCccCC--------CCCcccchhhHHHHHHHHHhCCCCCCC
Q 005045 538 TAHVGDFGLAKFLFEISDNP-SKNQTVSIGLKGSIGYIPPEHMNG--------QVSILGDIYSYGILLLEMFTGKRPTGD 608 (717)
Q Consensus 538 ~~kl~Dfg~~~~~~~~~~~~-~~~~~~~~~~~~~~~y~aPE~~~~--------~~~~~sDvwslG~vl~elltg~~p~~~ 608 (717)
.+||+|||.+.......... ...........||+.|+|||++.+ .++.++|||||||++|||++|..||..
T Consensus 158 ~~kL~DFG~a~~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~~~~~~~DiwslG~il~ell~g~~p~~~ 237 (336)
T 3g2f_A 158 TCVISDFGLSMRLTGNRLVRPGEEDNAAISEVGTIRYMAPEVLEGAVNLRDXESALKQVDMYALGLIYWEIFMRCTDLFP 237 (336)
T ss_dssp CEEECCCTTCEECSSSSCC---------CCTTSCGGGCCHHHHTTCCCGGGHHHHHHHHHHHHHHHHHHHHHTTBGGGST
T ss_pred cEEEeeccceeecccccccCccccccccccCCCccceeCchhhcCCcccccccccccccchHHHHHHHHHHHhcCCcCCC
Confidence 99999999998653221110 011122234569999999999765 256789999999999999999777644
Q ss_pred CCCC-chhhhHHH-HhcCC--hhhhhhcCCCCCCCCCCcHHHHHHHHHHHHHHhhhhhhhcchhhhHHHHHHHHHHhhcc
Q 005045 609 MFKD-DFSIHMFV-SMALP--DHVMDILDPSMPLDEENDEEQIEEVIEEKEMMIHIDLEVNTKNKLEECFVSVLRIGLMC 684 (717)
Q Consensus 609 ~~~~-~~~~~~~~-~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~c 684 (717)
.... ........ ....+ ..+............ + .........++..+.+++.+|
T Consensus 238 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------------------~---~~~~~~~~~~~~~l~~li~~c 295 (336)
T 3g2f_A 238 GESVPEYQMAFQTEVGNHPTFEDMQVLVSREKQRPK-------------------F---PEAWKENSLAVRSLKETIEDC 295 (336)
T ss_dssp TSCCCCCCCTTHHHHCSSCCHHHHHHHHTTSCCCCC-------------------C---CTTCCCCSHHHHHHHHHHHHH
T ss_pred ccchhHHHHhhhcccCCCchHHHHHhhhcccccCCC-------------------C---CcccccccchHHHHHHHHHHH
Confidence 3221 11110000 00000 001111110000000 0 000011233567899999999
Q ss_pred CCCCcCCCCCHHHHHHHHHHHHHHHHhhhhc
Q 005045 685 STTSPRERIAMNVVVNNLKTIRNCFLEFKKR 715 (717)
Q Consensus 685 l~~~p~~Rps~~eil~~l~~i~~~~~~~~~~ 715 (717)
|+.+|++|||++|+++.|+++...+.+++++
T Consensus 296 l~~dP~~Rps~~e~l~~L~~ll~~~~~~~~~ 326 (336)
T 3g2f_A 296 WDQDAEARLTAQXAEERMAELMMIWERNKSV 326 (336)
T ss_dssp SCSSGGGSCCHHHHHHHHHHHHHCCCC----
T ss_pred hcCChhhCcchHHHHHHHHHHHHHHHhcccC
Confidence 9999999999999999999999888777654
No 112
>2w4o_A Calcium/calmodulin-dependent protein kinase type IV; calmodulin-binding, nucleotide-binding, serine/threonine-protein kinase, ATP-binding; HET: DKI; 2.17A {Homo sapiens}
Probab=100.00 E-value=7.3e-39 Score=337.08 Aligned_cols=255 Identities=24% Similarity=0.314 Sum_probs=188.3
Q ss_pred ccccccccccccccccCcccccceEEEEeC-CCchhhhHHhHhhhhhHHHHHHHHHHHHhcCCCCceeEEEEeeccccCC
Q 005045 382 SDISKSTDNFSKENLIGTGSFGSVYKGTLG-DGTIVAIKVLKLQQQGALKSFIDECNALKSTRHRNILRVITACSSVDLE 460 (717)
Q Consensus 382 ~~~~~~~~~y~~~~~ig~g~~g~v~~~~~~-~~~~vavK~~~~~~~~~~~~~~~e~~~l~~l~h~ni~~~~~~~~~~~~~ 460 (717)
.......++|++.+.||+|+||.||+|+++ +++.||+|++.... ..+.+.+|++++++++||||+++++++.
T Consensus 46 ~~~~~~~~~y~~~~~lG~G~~g~Vy~~~~~~~~~~vavK~~~~~~--~~~~~~~E~~~l~~l~h~niv~~~~~~~----- 118 (349)
T 2w4o_A 46 SNRDALSDFFEVESELGRGATSIVYRCKQKGTQKPYALKVLKKTV--DKKIVRTEIGVLLRLSHPNIIKLKEIFE----- 118 (349)
T ss_dssp SBCSCGGGTEEEEEEEEECSSEEEEEEEETTTCCEEEEEEEEC------------CHHHHHCCCTTBCCEEEEEE-----
T ss_pred cccccccCcEEEeeEEeeCCCEEEEEEEECCCCcEEEEEEeccch--hHHHHHHHHHHHHhCCCCCCcceeeeEe-----
Confidence 334556788999999999999999999976 68889999987543 3366788999999999999999999954
Q ss_pred CCceEEEEEecCCCCChhhhccCCCCCcccccccCHHHHHHHHHHHHHHHHHHHhcCCCCeeecCCCCCCEEeCC---CC
Q 005045 461 GNDFKALVFEFMSNGNLDQWLHPSPAEHYQFKKLSVIQRLNIAIDVASALDYLHHHCDTPIAHCDLKPSNVLLDK---DM 537 (717)
Q Consensus 461 ~~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~dlkp~NIll~~---~~ 537 (717)
..+..++||||+++++|.+++... ..+++..+..++.||+.||+|||+. +|+||||||+||+++. ++
T Consensus 119 ~~~~~~lv~e~~~~~~L~~~l~~~-------~~~~~~~~~~i~~qi~~~L~~LH~~---~ivH~Dikp~NIll~~~~~~~ 188 (349)
T 2w4o_A 119 TPTEISLVLELVTGGELFDRIVEK-------GYYSERDAADAVKQILEAVAYLHEN---GIVHRDLKPENLLYATPAPDA 188 (349)
T ss_dssp CSSEEEEEECCCCSCBHHHHHTTC-------SSCCHHHHHHHHHHHHHHHHHHHHT---TCCCCCCCGGGEEESSSSTTC
T ss_pred cCCeEEEEEEeCCCCCHHHHHHhc-------CCCCHHHHHHHHHHHHHHHHHHHHC---CeEecCCCcccEEEecCCCCC
Confidence 455899999999999999999755 5689999999999999999999998 9999999999999975 88
Q ss_pred ceEEeeeccchhcccccCCCCCCcceeecccccccccCCCccCC-CCCcccchhhHHHHHHHHHhCCCCCCCCCCCchhh
Q 005045 538 TAHVGDFGLAKFLFEISDNPSKNQTVSIGLKGSIGYIPPEHMNG-QVSILGDIYSYGILLLEMFTGKRPTGDMFKDDFSI 616 (717)
Q Consensus 538 ~~kl~Dfg~~~~~~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~-~~~~~sDvwslG~vl~elltg~~p~~~~~~~~~~~ 616 (717)
.+||+|||.+..... ........||+.|+|||++.+ .++.++|||||||++|+|++|..||..........
T Consensus 189 ~~kl~Dfg~a~~~~~--------~~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~ell~g~~pf~~~~~~~~~~ 260 (349)
T 2w4o_A 189 PLKIADFGLSKIVEH--------QVLMKTVCGTPGYCAPEILRGCAYGPEVDMWSVGIITYILLCGFEPFYDERGDQFMF 260 (349)
T ss_dssp CEEECCCC------------------------CGGGSCHHHHTTCCCCTHHHHHHHHHHHHHHHHSSCTTCCTTCHHHHH
T ss_pred CEEEccCccccccCc--------ccccccccCCCCccCHHHhcCCCCCcccchHHHHHHHHHHHhCCCCCCCCcccHHHH
Confidence 999999999986521 111234568999999999765 58999999999999999999999997543322111
Q ss_pred hHHHHhcCChhhhhhcCCCCCCCCCCcHHHHHHHHHHHHHHhhhhhhhcchhhhHHHHHHHHHHhhccCCCCcCCCCCHH
Q 005045 617 HMFVSMALPDHVMDILDPSMPLDEENDEEQIEEVIEEKEMMIHIDLEVNTKNKLEECFVSVLRIGLMCSTTSPRERIAMN 696 (717)
Q Consensus 617 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~cl~~~p~~Rps~~ 696 (717)
.... ........ ....+++..+.+++.+||+.||++|||+.
T Consensus 261 ~~i~------------~~~~~~~~---------------------------~~~~~~~~~~~~li~~~L~~dP~~Rpt~~ 301 (349)
T 2w4o_A 261 RRIL------------NCEYYFIS---------------------------PWWDEVSLNAKDLVRKLIVLDPKKRLTTF 301 (349)
T ss_dssp HHHH------------TTCCCCCT---------------------------TTTTTSCHHHHHHHHTTSCSSGGGSCCHH
T ss_pred HHHH------------hCCCccCC---------------------------chhhhCCHHHHHHHHHHccCChhhCcCHH
Confidence 1111 11100000 00012255678999999999999999999
Q ss_pred HHHH
Q 005045 697 VVVN 700 (717)
Q Consensus 697 eil~ 700 (717)
|+++
T Consensus 302 e~l~ 305 (349)
T 2w4o_A 302 QALQ 305 (349)
T ss_dssp HHHH
T ss_pred HHhc
Confidence 9986
No 113
>3lxl_A Tyrosine-protein kinase JAK3; TYK2, inflammation, cancer, PAN inhibitor, ATP-binding mutation, membrane, nucleotide-binding, phosphoprot SCID; HET: IZA; 1.74A {Homo sapiens} PDB: 3lxk_A* 4hvd_A* 4hvg_A* 4hvh_A* 4hvi_A* 3pjc_A* 1yvj_A*
Probab=100.00 E-value=4.9e-40 Score=343.66 Aligned_cols=280 Identities=22% Similarity=0.315 Sum_probs=209.1
Q ss_pred cccccccccccCcccccceEEEEe-----CCCchhhhHHhHhhhhhHHHHHHHHHHHHhcCCCCceeEEEEeeccccCCC
Q 005045 387 STDNFSKENLIGTGSFGSVYKGTL-----GDGTIVAIKVLKLQQQGALKSFIDECNALKSTRHRNILRVITACSSVDLEG 461 (717)
Q Consensus 387 ~~~~y~~~~~ig~g~~g~v~~~~~-----~~~~~vavK~~~~~~~~~~~~~~~e~~~l~~l~h~ni~~~~~~~~~~~~~~ 461 (717)
..++|++.+.||+|+||.||+|++ .+++.||+|++........+.+.+|++++++++||||+++++++.. ++
T Consensus 21 ~~~~y~~~~~lg~G~~g~V~~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~---~~ 97 (327)
T 3lxl_A 21 EERHLKYISQLGKGNFGSVELCRYDPLGDNTGALVAVKQLQHSGPDQQRDFQREIQILKALHSDFIVKYRGVSYG---PG 97 (327)
T ss_dssp CGGGEEEEEEEEEETTEEEEEEEECTTSSSCSEEEEEEEESSCCHHHHHHHHHHHHHHHTCCCTTBCCEEEEEEC---SS
T ss_pred chhhhhhhhhccCCCCeEEEEEEeccCCCCcceEEEEEEeccCCHHHHHHHHHHHHHHHhcCCCceeEEEEEEec---CC
Confidence 356999999999999999999983 3788999999987666667889999999999999999999998642 34
Q ss_pred CceEEEEEecCCCCChhhhccCCCCCcccccccCHHHHHHHHHHHHHHHHHHHhcCCCCeeecCCCCCCEEeCCCCceEE
Q 005045 462 NDFKALVFEFMSNGNLDQWLHPSPAEHYQFKKLSVIQRLNIAIDVASALDYLHHHCDTPIAHCDLKPSNVLLDKDMTAHV 541 (717)
Q Consensus 462 ~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~dlkp~NIll~~~~~~kl 541 (717)
....++||||+++++|.+++.... ..+++..+..++.||+.||+|||+. +|+||||||+||+++.++.+||
T Consensus 98 ~~~~~lv~e~~~~~~L~~~l~~~~------~~~~~~~~~~i~~qi~~al~~lH~~---~ivH~Dikp~NIl~~~~~~~kl 168 (327)
T 3lxl_A 98 RQSLRLVMEYLPSGCLRDFLQRHR------ARLDASRLLLYSSQICKGMEYLGSR---RCVHRDLAARNILVESEAHVKI 168 (327)
T ss_dssp SCEEEEEEECCTTCBHHHHHHHHG------GGCCHHHHHHHHHHHHHHHHHHHHT---TEECSCCSGGGEEEEETTEEEE
T ss_pred CceEEEEEeecCCCCHHHHHHhcc------cCCCHHHHHHHHHHHHHHHHHHHhC---CccCCCCChhhEEECCCCCEEE
Confidence 567899999999999999997432 4689999999999999999999998 9999999999999999999999
Q ss_pred eeeccchhcccccCCCCCCcceeecccccccccCCCccCC-CCCcccchhhHHHHHHHHHhCCCCCCCCCCCchhhhHHH
Q 005045 542 GDFGLAKFLFEISDNPSKNQTVSIGLKGSIGYIPPEHMNG-QVSILGDIYSYGILLLEMFTGKRPTGDMFKDDFSIHMFV 620 (717)
Q Consensus 542 ~Dfg~~~~~~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~-~~~~~sDvwslG~vl~elltg~~p~~~~~~~~~~~~~~~ 620 (717)
+|||.+...... ...........++..|+|||++.+ .++.++|||||||++|+|++|..||.....+. .
T Consensus 169 ~Dfg~~~~~~~~----~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~ll~g~~p~~~~~~~~------~ 238 (327)
T 3lxl_A 169 ADFGLAKLLPLD----KDYYVVREPGQSPIFWYAPESLSDNIFSRQSDVWSFGVVLYELFTYCDKSCSPSAEF------L 238 (327)
T ss_dssp CCGGGCEECCTT----CSEEECSSCCCSCGGGSCHHHHHHCEEEHHHHHHHHHHHHHHHHTTTCGGGSHHHHH------H
T ss_pred cccccceecccC----CccceeeccCCccccccCHHHhccCCCChHHhHHHHHHHHHHHHhCCCCCccccchh------h
Confidence 999999865211 111112233457888999999655 47999999999999999999999986431110 0
Q ss_pred HhcCChhhhhhcCCCCCCCCCCcHHHHHHHHHHHHHHhhhhhhhcchhhhHHHHHHHHHHhhccCCCCcCCCCCHHHHHH
Q 005045 621 SMALPDHVMDILDPSMPLDEENDEEQIEEVIEEKEMMIHIDLEVNTKNKLEECFVSVLRIGLMCSTTSPRERIAMNVVVN 700 (717)
Q Consensus 621 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~cl~~~p~~Rps~~eil~ 700 (717)
.... .. . ......++...... ......+..++..+.+++.+||+.+|++|||++|+++
T Consensus 239 ~~~~---------~~--~----~~~~~~~~~~~~~~-------~~~~~~~~~~~~~l~~li~~~l~~dP~~Rps~~ell~ 296 (327)
T 3lxl_A 239 RMMG---------CE--R----DVPALSRLLELLEE-------GQRLPAPPACPAEVHELMKLCWAPSPQDRPSFSALGP 296 (327)
T ss_dssp HHCC-------------------CCHHHHHHHHHHT-------TCCCCCCTTCCHHHHHHHHHHTCSSGGGSCCHHHHHH
T ss_pred hhcc---------cc--c----ccccHHHHHHHhhc-------ccCCCCCCcccHHHHHHHHHHcCCChhhCcCHHHHHH
Confidence 0000 00 0 00000000000000 0001122344677899999999999999999999999
Q ss_pred HHHHHHHHHH
Q 005045 701 NLKTIRNCFL 710 (717)
Q Consensus 701 ~l~~i~~~~~ 710 (717)
.|+.+.....
T Consensus 297 ~L~~~~~~~~ 306 (327)
T 3lxl_A 297 QLDMLWSGSR 306 (327)
T ss_dssp HHHHC-----
T ss_pred HHHHHHhhhc
Confidence 9999876544
No 114
>3o0g_A Cell division protein kinase 5; kinase activator complex, kinase inhibitor complex, transferase-transferase activator complex; HET: 3O0; 1.95A {Homo sapiens} SCOP: d.144.1.7 PDB: 1unh_A* 1ung_A* 1unl_A* 1h4l_A
Probab=100.00 E-value=6e-39 Score=329.71 Aligned_cols=272 Identities=21% Similarity=0.304 Sum_probs=197.3
Q ss_pred cccccccccCcccccceEEEEeC-CCchhhhHHhHhhh--hhHHHHHHHHHHHHhcCCCCceeEEEEeeccccCCCCceE
Q 005045 389 DNFSKENLIGTGSFGSVYKGTLG-DGTIVAIKVLKLQQ--QGALKSFIDECNALKSTRHRNILRVITACSSVDLEGNDFK 465 (717)
Q Consensus 389 ~~y~~~~~ig~g~~g~v~~~~~~-~~~~vavK~~~~~~--~~~~~~~~~e~~~l~~l~h~ni~~~~~~~~~~~~~~~~~~ 465 (717)
++|++.++||+|+||.||+|.++ +++.||+|++.... ......+.+|++++++++||||+++++++. +++..
T Consensus 2 ~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~-----~~~~~ 76 (292)
T 3o0g_A 2 QKYEKLEKIGEGTYGTVFKAKNRETHEIVALKRVRLDDDDEGVPSSALREICLLKELKHKNIVRLHDVLH-----SDKKL 76 (292)
T ss_dssp CSEEEEEEEEECSSSEEEEEEETTTCCEEEEEEEESSCSSTTHHHHHHHHHHHHTTCCCTTBCCEEEEEE-----ETTEE
T ss_pred CCceeeeEecCCCCeEEEEEEECCCCceEEEEeeeccCCcCCcchHHHHHHHHHhcCCCCCEeeEEeEEE-----eCCEE
Confidence 58999999999999999999965 78999999986442 334577889999999999999999999954 45589
Q ss_pred EEEEecCCCCChhhhccCCCCCcccccccCHHHHHHHHHHHHHHHHHHHhcCCCCeeecCCCCCCEEeCCCCceEEeeec
Q 005045 466 ALVFEFMSNGNLDQWLHPSPAEHYQFKKLSVIQRLNIAIDVASALDYLHHHCDTPIAHCDLKPSNVLLDKDMTAHVGDFG 545 (717)
Q Consensus 466 ~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~dlkp~NIll~~~~~~kl~Dfg 545 (717)
++||||+++ ++.+++.... ..+++..+..++.||+.||+|||+. +|+||||||+||+++.++.+||+|||
T Consensus 77 ~lv~e~~~~-~l~~~~~~~~------~~l~~~~~~~~~~ql~~~l~~lH~~---~ivH~dikp~Nil~~~~~~~kl~Dfg 146 (292)
T 3o0g_A 77 TLVFEFCDQ-DLKKYFDSCN------GDLDPEIVKSFLFQLLKGLGFCHSR---NVLHRDLKPQNLLINRNGELKLANFG 146 (292)
T ss_dssp EEEEECCSE-EHHHHHHHTT------TCCCHHHHHHHHHHHHHHHHHHHHT---TEECCCCSGGGEEECTTSCEEECCCT
T ss_pred EEEEecCCC-CHHHHHHhCC------CCCCHHHHHHHHHHHHHHHHHHHhC---CeecCCCCHHHEEEcCCCCEEEeecc
Confidence 999999975 6655554322 5689999999999999999999998 99999999999999999999999999
Q ss_pred cchhcccccCCCCCCcceeecccccccccCCCccCC-C-CCcccchhhHHHHHHHHHhCCCCCCCCCCCchhhhHHHHhc
Q 005045 546 LAKFLFEISDNPSKNQTVSIGLKGSIGYIPPEHMNG-Q-VSILGDIYSYGILLLEMFTGKRPTGDMFKDDFSIHMFVSMA 623 (717)
Q Consensus 546 ~~~~~~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~-~-~~~~sDvwslG~vl~elltg~~p~~~~~~~~~~~~~~~~~~ 623 (717)
.+..... .........+|+.|+|||++.+ . ++.++|||||||++|+|++|..||.................
T Consensus 147 ~~~~~~~-------~~~~~~~~~~t~~y~aPE~~~~~~~~~~~~DiwslG~il~~l~~~~~p~~~~~~~~~~~~~i~~~~ 219 (292)
T 3o0g_A 147 LARAFGI-------PVRCYSAEVVTLWYRPPDVLFGAKLYSTSIDMWSAGCIFAELANAGRPLFPGNDVDDQLKRIFRLL 219 (292)
T ss_dssp TCEECCS-------CCSCCCSCCSCGGGCCHHHHTTCSCCCTHHHHHHHHHHHHHHTTTSCCSCCCSSHHHHHHHHHHHH
T ss_pred cceecCC-------ccccccCCccccCCcChHHHcCCCCcCchHHHHHHHHHHHHHHHcCCCCcCCCCHHHHHHHHHHHh
Confidence 9986521 1122234568999999999654 3 79999999999999999999888654333222222211110
Q ss_pred -CC--hhhhhhcCC-CCCCCCCCcHHHHHHHHHHHHHHhhhhhhhcchhhhHHHHHHHHHHhhccCCCCcCCCCCHHHHH
Q 005045 624 -LP--DHVMDILDP-SMPLDEENDEEQIEEVIEEKEMMIHIDLEVNTKNKLEECFVSVLRIGLMCSTTSPRERIAMNVVV 699 (717)
Q Consensus 624 -~~--~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~cl~~~p~~Rps~~eil 699 (717)
.+ ..+...... .....+.. ..........+..+..+.+++.+||+.||++|||++|++
T Consensus 220 ~~~~~~~~~~~~~~~~~~~~~~~------------------~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~R~t~~e~l 281 (292)
T 3o0g_A 220 GTPTEEQWPSMTKLPDYKPYPMY------------------PATTSLVNVVPKLNATGRDLLQNLLKCNPVQRISAEEAL 281 (292)
T ss_dssp CCCCTTTCTTGGGSTTCCCCCCC------------------CTTCCCTTTSTTCCHHHHHHHHHHSCSSGGGSCCHHHHH
T ss_pred CCCChhhhhhhcccccccccccc------------------cCCcchhhcccccChHHHHHHHHHhccChhhCCCHHHHh
Confidence 00 001100000 00000000 000000011122356678999999999999999999998
Q ss_pred H
Q 005045 700 N 700 (717)
Q Consensus 700 ~ 700 (717)
+
T Consensus 282 ~ 282 (292)
T 3o0g_A 282 Q 282 (292)
T ss_dssp T
T ss_pred c
Confidence 6
No 115
>2y94_A 5'-AMP-activated protein kinase catalytic subunit; transferase, nucleotide-binding, staurosporine-binding, serine/threonine-protein kinase; HET: TPO STU AMP; 3.24A {Rattus norvegicus}
Probab=100.00 E-value=1.2e-38 Score=346.63 Aligned_cols=248 Identities=27% Similarity=0.397 Sum_probs=201.2
Q ss_pred ccccccccccccCcccccceEEEEeC-CCchhhhHHhHhhh---hhHHHHHHHHHHHHhcCCCCceeEEEEeeccccCCC
Q 005045 386 KSTDNFSKENLIGTGSFGSVYKGTLG-DGTIVAIKVLKLQQ---QGALKSFIDECNALKSTRHRNILRVITACSSVDLEG 461 (717)
Q Consensus 386 ~~~~~y~~~~~ig~g~~g~v~~~~~~-~~~~vavK~~~~~~---~~~~~~~~~e~~~l~~l~h~ni~~~~~~~~~~~~~~ 461 (717)
...++|.+.+.||+|+||.||+|++. +|+.||+|++.... ......+.+|+++++.++||||+++++++. .
T Consensus 13 ~~~~~Y~l~~~LG~G~fg~V~~a~~~~~g~~vAvK~i~~~~~~~~~~~~~~~~Ei~~l~~l~HpnIv~l~~~~~-----~ 87 (476)
T 2y94_A 13 VKIGHYILGDTLGVGTFGKVKVGKHELTGHKVAVKILNRQKIRSLDVVGKIRREIQNLKLFRHPHIIKLYQVIS-----T 87 (476)
T ss_dssp CEETTEEEEEEEECCSSSCEEEEEETTTCCEEEEEEEEHHHHHHTTTHHHHHHHHHHHTTCCCTTBCCEEEEEE-----C
T ss_pred ceecCEEEEEEEeeCCCeEEEEEEECCCCCEEEEEEEEhhhccCHHHHHHHHHHHHHHHhCCCCCCCcEEEEEE-----E
Confidence 45678999999999999999999976 89999999986442 234567899999999999999999999953 4
Q ss_pred CceEEEEEecCCCCChhhhccCCCCCcccccccCHHHHHHHHHHHHHHHHHHHhcCCCCeeecCCCCCCEEeCCCCceEE
Q 005045 462 NDFKALVFEFMSNGNLDQWLHPSPAEHYQFKKLSVIQRLNIAIDVASALDYLHHHCDTPIAHCDLKPSNVLLDKDMTAHV 541 (717)
Q Consensus 462 ~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~dlkp~NIll~~~~~~kl 541 (717)
.+..++||||+++++|.+++... +.+++..+..++.||+.||+|||+. +|+||||||+||+++.++.+||
T Consensus 88 ~~~~~lv~E~~~gg~L~~~l~~~-------~~l~~~~~~~i~~qi~~aL~~LH~~---givHrDLkp~NIll~~~~~vkL 157 (476)
T 2y94_A 88 PSDIFMVMEYVSGGELFDYICKN-------GRLDEKESRRLFQQILSGVDYCHRH---MVVHRDLKPENVLLDAHMNAKI 157 (476)
T ss_dssp SSEEEEEEECCSSEEHHHHTTSS-------SSCCHHHHHHHHHHHHHHHHHHHTT---TEECSCCSGGGEEECTTCCEEE
T ss_pred CCEEEEEEeCCCCCcHHHHHHhc-------CCCCHHHHHHHHHHHHHHHHHHHHC---CCCcccccHHHEEEecCCCeEE
Confidence 45899999999999999999754 5689999999999999999999998 9999999999999999999999
Q ss_pred eeeccchhcccccCCCCCCcceeecccccccccCCCccCCC--CCcccchhhHHHHHHHHHhCCCCCCCCCCCchhhhHH
Q 005045 542 GDFGLAKFLFEISDNPSKNQTVSIGLKGSIGYIPPEHMNGQ--VSILGDIYSYGILLLEMFTGKRPTGDMFKDDFSIHMF 619 (717)
Q Consensus 542 ~Dfg~~~~~~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~--~~~~sDvwslG~vl~elltg~~p~~~~~~~~~~~~~~ 619 (717)
+|||++..... ........||+.|+|||++.+. .+.++|||||||++|+|++|..||...... ...
T Consensus 158 ~DFG~a~~~~~--------~~~~~~~~gt~~y~aPE~~~~~~~~~~~~DiwSlGvil~elltG~~Pf~~~~~~--~~~-- 225 (476)
T 2y94_A 158 ADFGLSNMMSD--------GEFLRTSCGSPNYAAPEVISGRLYAGPEVDIWSSGVILYALLCGTLPFDDDHVP--TLF-- 225 (476)
T ss_dssp CCCSSCEECCT--------TCCBCCCCSCSTTCCHHHHTTCCBCSHHHHHHHHHHHHHHHHHSSCSSCCSSSH--HHH--
T ss_pred Eeccchhhccc--------cccccccCCCcCeEChhhccCCCCCCCcceehhhHHHHHHHhhCCCCCCCCCHH--HHH--
Confidence 99999986521 1122345689999999997765 378999999999999999999999754221 111
Q ss_pred HHhcCChhhhhhcCCCCCCCCCCcHHHHHHHHHHHHHHhhhhhhhcchhhhHHHHHHHHHHhhccCCCCcCCCCCHHHHH
Q 005045 620 VSMALPDHVMDILDPSMPLDEENDEEQIEEVIEEKEMMIHIDLEVNTKNKLEECFVSVLRIGLMCSTTSPRERIAMNVVV 699 (717)
Q Consensus 620 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~cl~~~p~~Rps~~eil 699 (717)
..+.+..... +..++..+.+++.+||+.||++|||++||+
T Consensus 226 ---------~~i~~~~~~~-------------------------------p~~~s~~~~~Li~~~L~~dP~~Rpt~~eil 265 (476)
T 2y94_A 226 ---------KKICDGIFYT-------------------------------PQYLNPSVISLLKHMLQVDPMKRATIKDIR 265 (476)
T ss_dssp ---------HHHHTTCCCC-------------------------------CTTCCHHHHHHHHHHTCSSTTTSCCHHHHH
T ss_pred ---------HHHhcCCcCC-------------------------------CccCCHHHHHHHHHHcCCCchhCcCHHHHH
Confidence 1111111110 011144578899999999999999999998
Q ss_pred H
Q 005045 700 N 700 (717)
Q Consensus 700 ~ 700 (717)
+
T Consensus 266 ~ 266 (476)
T 2y94_A 266 E 266 (476)
T ss_dssp T
T ss_pred h
Confidence 6
No 116
>3tt0_A Basic fibroblast growth factor receptor 1; kinase domain, transferase, transferase-transferase inhibito; HET: 07J; 2.80A {Homo sapiens}
Probab=100.00 E-value=6.5e-39 Score=342.20 Aligned_cols=270 Identities=25% Similarity=0.390 Sum_probs=209.7
Q ss_pred ccccccccccccccCcccccceEEEEeC--------CCchhhhHHhHhhh-hhHHHHHHHHHHHHhcC-CCCceeEEEEe
Q 005045 384 ISKSTDNFSKENLIGTGSFGSVYKGTLG--------DGTIVAIKVLKLQQ-QGALKSFIDECNALKST-RHRNILRVITA 453 (717)
Q Consensus 384 ~~~~~~~y~~~~~ig~g~~g~v~~~~~~--------~~~~vavK~~~~~~-~~~~~~~~~e~~~l~~l-~h~ni~~~~~~ 453 (717)
+....++|++.++||+|+||.||+|.+. .++.||+|++.... ......+.+|+++++++ +||||++++++
T Consensus 64 ~~i~~~~y~i~~~LG~G~~g~Vy~a~~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~~hpnIv~~~~~ 143 (382)
T 3tt0_A 64 WELPRDRLVLGKPLGEGAFGQVVLAEAIGLDKDKPNRVTKVAVKMLKSDATEKDLSDLISEMEMMKMIGKHKNIINLLGA 143 (382)
T ss_dssp TBCCGGGEEEEEEEEECSSEEEEEEEEETSSTTCTTCEEEEEEEEECTTCCHHHHHHHHHHHHHHHHHCCCTTBCCEEEE
T ss_pred cccchhheEeeeEEecCCCeEEEEEEEccccccccccceEEEEEeeccccCHHHHHHHHHHHHHHHHhcCCchhhhheee
Confidence 3456789999999999999999999842 33569999987542 34457889999999999 99999999999
Q ss_pred eccccCCCCceEEEEEecCCCCChhhhccCCCCCc---------ccccccCHHHHHHHHHHHHHHHHHHHhcCCCCeeec
Q 005045 454 CSSVDLEGNDFKALVFEFMSNGNLDQWLHPSPAEH---------YQFKKLSVIQRLNIAIDVASALDYLHHHCDTPIAHC 524 (717)
Q Consensus 454 ~~~~~~~~~~~~~lv~e~~~~~~L~~~l~~~~~~~---------~~~~~~~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~ 524 (717)
+. ..+..++||||+++++|.+++....... .....+++..++.++.||+.||+|||+. +|+||
T Consensus 144 ~~-----~~~~~~lv~e~~~~g~L~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~~qi~~aL~~LH~~---~ivH~ 215 (382)
T 3tt0_A 144 CT-----QDGPLYVIVEYASKGNLREYLQARRPPGLEYSYNPSHNPEEQLSSKDLVSCAYQVARGMEYLASK---KCIHR 215 (382)
T ss_dssp EC-----SSSSCEEEEECCTTCBHHHHHHHTCCSSSSSCCCCCSSCCCCCCHHHHHHHHHHHHHHHHHHHHT---TCCCS
T ss_pred ec-----cCCceEEEEEecCCCcHHHHHHHhcccccccccccccccccccCHHHHHHHHHHHHHHHHHHHhC---CEecC
Confidence 53 4557899999999999999987543110 1124689999999999999999999998 99999
Q ss_pred CCCCCCEEeCCCCceEEeeeccchhcccccCCCCCCcceeecccccccccCCCccCC-CCCcccchhhHHHHHHHHHh-C
Q 005045 525 DLKPSNVLLDKDMTAHVGDFGLAKFLFEISDNPSKNQTVSIGLKGSIGYIPPEHMNG-QVSILGDIYSYGILLLEMFT-G 602 (717)
Q Consensus 525 dlkp~NIll~~~~~~kl~Dfg~~~~~~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~-~~~~~sDvwslG~vl~ellt-g 602 (717)
||||+||+++.++.+||+|||.+....... .........+++.|+|||++.+ .++.++|||||||++|+|++ |
T Consensus 216 Dlkp~NIll~~~~~~kL~DFG~a~~~~~~~-----~~~~~~~~~~t~~y~aPE~~~~~~~~~~~DiwslG~il~ellt~g 290 (382)
T 3tt0_A 216 DLAARNVLVTEDNVMKIADFGLARDIHHID-----YYKKTTNGRLPVKWMAPEALFDRIYTHQSDVWSFGVLLWEIFTLG 290 (382)
T ss_dssp CCCGGGEEECTTCCEEECSCSCCCCSSCCC-----TTCCCTTCCCGGGGSCHHHHHSCCCCHHHHHHHHHHHHHHHHTTS
T ss_pred CCCcceEEEcCCCcEEEcccCccccccccc-----ccccccCCCCCcceeCHHHhcCCCCCchhHHHHHHHHHHHHHhCC
Confidence 999999999999999999999998652211 1112233457889999999654 58999999999999999999 9
Q ss_pred CCCCCCCCCCchhhhHHHHhcCChhhhhhcCCCCCCCCCCcHHHHHHHHHHHHHHhhhhhhhcchhhhHHHHHHHHHHhh
Q 005045 603 KRPTGDMFKDDFSIHMFVSMALPDHVMDILDPSMPLDEENDEEQIEEVIEEKEMMIHIDLEVNTKNKLEECFVSVLRIGL 682 (717)
Q Consensus 603 ~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~ 682 (717)
..||....... ....... ..... .+..++..+.+++.
T Consensus 291 ~~p~~~~~~~~--~~~~~~~--------~~~~~---------------------------------~~~~~~~~l~~li~ 327 (382)
T 3tt0_A 291 GSPYPGVPVEE--LFKLLKE--------GHRMD---------------------------------KPSNCTNELYMMMR 327 (382)
T ss_dssp CCSSTTCCHHH--HHHHHHT--------TCCCC---------------------------------CCSSCCHHHHHHHH
T ss_pred CCCCCCCCHHH--HHHHHHc--------CCCCC---------------------------------CCccCCHHHHHHHH
Confidence 99997542211 1111110 00000 11123566889999
Q ss_pred ccCCCCcCCCCCHHHHHHHHHHHHHHH
Q 005045 683 MCSTTSPRERIAMNVVVNNLKTIRNCF 709 (717)
Q Consensus 683 ~cl~~~p~~Rps~~eil~~l~~i~~~~ 709 (717)
+||+.+|++|||++||++.|+++....
T Consensus 328 ~~l~~dP~~Rps~~ell~~L~~~~~~~ 354 (382)
T 3tt0_A 328 DCWHAVPSQRPTFKQLVEDLDRIVALT 354 (382)
T ss_dssp HHTCSSGGGSCCHHHHHHHHHHHHHHS
T ss_pred HHcCCChhhCcCHHHHHHHHHHHHHHH
Confidence 999999999999999999999998654
No 117
>2pvf_A Fibroblast growth factor receptor 2; kinase domain fold consisting of N- and C-lobes, transferase; HET: PTR ACP; 1.80A {Homo sapiens} PDB: 3cly_A* 2pzr_A* 2pzp_A* 2pvy_A* 2pz5_A* 2q0b_A* 2pwl_A* 2py3_A* 3ri1_A* 1gjo_A 1oec_A* 3b2t_A* 3gql_A* 3gqi_A* 1fgk_A 1fgi_A* 1agw_A 2fgi_A* 3js2_A* 3ky2_A ...
Probab=100.00 E-value=3.9e-39 Score=337.76 Aligned_cols=273 Identities=22% Similarity=0.388 Sum_probs=208.2
Q ss_pred cccccccccccccCcccccceEEEEeC--------CCchhhhHHhHhhh-hhHHHHHHHHHHHHhcC-CCCceeEEEEee
Q 005045 385 SKSTDNFSKENLIGTGSFGSVYKGTLG--------DGTIVAIKVLKLQQ-QGALKSFIDECNALKST-RHRNILRVITAC 454 (717)
Q Consensus 385 ~~~~~~y~~~~~ig~g~~g~v~~~~~~--------~~~~vavK~~~~~~-~~~~~~~~~e~~~l~~l-~h~ni~~~~~~~ 454 (717)
....++|++.+.||+|+||.||+|.+. +++.||+|++.... ......+.+|+++++++ +||||+++++++
T Consensus 31 ~~~~~~y~~~~~lG~G~~g~Vy~~~~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~~hp~iv~~~~~~ 110 (334)
T 2pvf_A 31 EFPRDKLTLGKPLGEGAFGQVVMAEAVGIDKDKPKEAVTVAVKMLKDDATEKDLSDLVSEMEMMKMIGKHKNIINLLGAC 110 (334)
T ss_dssp BCCGGGEEEEEEEEECSSCEEEEEEETTCSTTCC---CEEEEEECCTTCCHHHHHHHHHHHHHHHHHCCCTTBCCEEEEE
T ss_pred cCCHhHeEEeeEEeecCceeEEEeEeccccccccccceEEEEeeeccCCcHHHHHHHHHHHHHHHHhhcCCCEeeEEEEE
Confidence 445789999999999999999999853 46779999987542 34467789999999999 999999999995
Q ss_pred ccccCCCCceEEEEEecCCCCChhhhccCCCCCc---------ccccccCHHHHHHHHHHHHHHHHHHHhcCCCCeeecC
Q 005045 455 SSVDLEGNDFKALVFEFMSNGNLDQWLHPSPAEH---------YQFKKLSVIQRLNIAIDVASALDYLHHHCDTPIAHCD 525 (717)
Q Consensus 455 ~~~~~~~~~~~~lv~e~~~~~~L~~~l~~~~~~~---------~~~~~~~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~d 525 (717)
. ..+..++||||+++++|.+++....... .....+++..++.++.||+.||+|||+. +|+|||
T Consensus 111 ~-----~~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~qi~~aL~~LH~~---~ivH~D 182 (334)
T 2pvf_A 111 T-----QDGPLYVIVEYASKGNLREYLRARRPPGMEYSYDINRVPEEQMTFKDLVSCTYQLARGMEYLASQ---KCIHRD 182 (334)
T ss_dssp C-----SSSCCEEEEECCTTCBHHHHHHTTSCTTCCSCC--------CCCHHHHHHHHHHHHHHHHHHHHT---TEECSC
T ss_pred c-----cCCceEEEEECCCCCcHHHHHHHhccccccccccccccccccCCHHHHHHHHHHHHHHHHHHHhC---CeeCCC
Confidence 3 4458899999999999999997653210 0113589999999999999999999998 999999
Q ss_pred CCCCCEEeCCCCceEEeeeccchhcccccCCCCCCcceeecccccccccCCCccCC-CCCcccchhhHHHHHHHHHh-CC
Q 005045 526 LKPSNVLLDKDMTAHVGDFGLAKFLFEISDNPSKNQTVSIGLKGSIGYIPPEHMNG-QVSILGDIYSYGILLLEMFT-GK 603 (717)
Q Consensus 526 lkp~NIll~~~~~~kl~Dfg~~~~~~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~-~~~~~sDvwslG~vl~ellt-g~ 603 (717)
|||+||+++.++.+||+|||.+....... .........+++.|+|||++.+ .++.++|||||||++|+|++ |.
T Consensus 183 lkp~NIll~~~~~~kL~Dfg~~~~~~~~~-----~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~ellt~g~ 257 (334)
T 2pvf_A 183 LAARNVLVTENNVMKIADFGLARDINNID-----YYKKTTNGRLPVKWMAPEALFDRVYTHQSDVWSFGVLMWEIFTLGG 257 (334)
T ss_dssp CSGGGEEECTTCCEEECCCTTCEECTTTS-----SEECCSCCCCCGGGCCHHHHHHCEECHHHHHHHHHHHHHHHHTTSC
T ss_pred CccceEEEcCCCCEEEccccccccccccc-----cccccCCCCcccceeChHHhcCCCcChHHHHHHHHHHHHHHHhCCC
Confidence 99999999999999999999998652211 1112223446788999999644 58999999999999999999 99
Q ss_pred CCCCCCCCCchhhhHHHHhcCChhhhhhcCCCCCCCCCCcHHHHHHHHHHHHHHhhhhhhhcchhhhHHHHHHHHHHhhc
Q 005045 604 RPTGDMFKDDFSIHMFVSMALPDHVMDILDPSMPLDEENDEEQIEEVIEEKEMMIHIDLEVNTKNKLEECFVSVLRIGLM 683 (717)
Q Consensus 604 ~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~ 683 (717)
.||....... ........ .... .+..++..+.+++.+
T Consensus 258 ~p~~~~~~~~--~~~~~~~~--------~~~~---------------------------------~~~~~~~~l~~li~~ 294 (334)
T 2pvf_A 258 SPYPGIPVEE--LFKLLKEG--------HRMD---------------------------------KPANCTNELYMMMRD 294 (334)
T ss_dssp CSSTTCCHHH--HHHHHHHT--------CCCC---------------------------------CCTTCCHHHHHHHHH
T ss_pred CCcCcCCHHH--HHHHHhcC--------CCCC---------------------------------CCccCCHHHHHHHHH
Confidence 9997542211 11111000 0000 111235668899999
Q ss_pred cCCCCcCCCCCHHHHHHHHHHHHHHHHhhh
Q 005045 684 CSTTSPRERIAMNVVVNNLKTIRNCFLEFK 713 (717)
Q Consensus 684 cl~~~p~~Rps~~eil~~l~~i~~~~~~~~ 713 (717)
||+.+|++|||++|+++.|+++.......+
T Consensus 295 ~l~~dp~~Rps~~ell~~L~~l~~~~~~~~ 324 (334)
T 2pvf_A 295 CWHAVPSQRPTFKQLVEDLDRILTLTTNEE 324 (334)
T ss_dssp HTCSSGGGSCCHHHHHHHHHHHHHHHC---
T ss_pred HccCChhhCcCHHHHHHHHHHHHhccccCc
Confidence 999999999999999999999987665443
No 118
>1t46_A HOMO sapiens V-KIT hardy-zuckerman 4 feline sarcoma viral oncogene homolog; kinase, structure, inhibitor, STI-571, gleevec, transferase activator; HET: STI; 1.60A {Homo sapiens} SCOP: d.144.1.7 PDB: 1pkg_A* 1t45_A 3g0e_A* 3g0f_A*
Probab=100.00 E-value=8.2e-39 Score=332.32 Aligned_cols=271 Identities=23% Similarity=0.332 Sum_probs=210.8
Q ss_pred ccccccccccccccCcccccceEEEEe------CCCchhhhHHhHhhh-hhHHHHHHHHHHHHhcC-CCCceeEEEEeec
Q 005045 384 ISKSTDNFSKENLIGTGSFGSVYKGTL------GDGTIVAIKVLKLQQ-QGALKSFIDECNALKST-RHRNILRVITACS 455 (717)
Q Consensus 384 ~~~~~~~y~~~~~ig~g~~g~v~~~~~------~~~~~vavK~~~~~~-~~~~~~~~~e~~~l~~l-~h~ni~~~~~~~~ 455 (717)
+....++|++.+.||+|+||.||+|.+ .+++.||+|++.... ....+.+.+|+++++++ +||||+++++++.
T Consensus 18 ~~~~~~~y~~~~~lg~G~~g~V~~~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~~h~~i~~~~~~~~ 97 (313)
T 1t46_A 18 WEFPRNRLSFGKTLGAGAFGKVVEATAYGLIKSDAAMTVAVKMLKPSAHLTEREALMSELKVLSYLGNHMNIVNLLGACT 97 (313)
T ss_dssp GBCCGGGEEEEEEEEECSSEEEEEEEEESSSSTTCEEEEEEEEECTTCCHHHHHHHHHHHHHHHHHCCCTTBCCEEEEEC
T ss_pred cccChhhhhHHHhhCccCCcceEEEEEeeccccchhhhhHHHhcCcchhHHHHHHHHHHHHHHhhcccCCCeeeEEEEEe
Confidence 455678999999999999999999984 257789999987543 23457889999999999 9999999999953
Q ss_pred cccCCCCceEEEEEecCCCCChhhhccCCCCCc-----------ccccccCHHHHHHHHHHHHHHHHHHHhcCCCCeeec
Q 005045 456 SVDLEGNDFKALVFEFMSNGNLDQWLHPSPAEH-----------YQFKKLSVIQRLNIAIDVASALDYLHHHCDTPIAHC 524 (717)
Q Consensus 456 ~~~~~~~~~~~lv~e~~~~~~L~~~l~~~~~~~-----------~~~~~~~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~ 524 (717)
..+..++||||+++++|.+++....... .....+++..+..++.||+.||+|||+. +++||
T Consensus 98 -----~~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~qi~~~l~~lH~~---~i~H~ 169 (313)
T 1t46_A 98 -----IGGPTLVITEYCCYGDLLNFLRRKRDSFICSKTSPAIMEDDELALDLEDLLSFSYQVAKGMAFLASK---NCIHR 169 (313)
T ss_dssp -----SSSSCEEEEECCTTEEHHHHHHHTTTTC--------------CCCCHHHHHHHHHHHHHHHHHHHHT---TCCCS
T ss_pred -----cCCCcEEEEecCCCCCHHHHHHhcccccccccccccccccccccCCHHHHHHHHHHHHHHHHHHHHC---CeecC
Confidence 4457899999999999999987543110 0113589999999999999999999998 99999
Q ss_pred CCCCCCEEeCCCCceEEeeeccchhcccccCCCCCCcceeecccccccccCCCcc-CCCCCcccchhhHHHHHHHHHh-C
Q 005045 525 DLKPSNVLLDKDMTAHVGDFGLAKFLFEISDNPSKNQTVSIGLKGSIGYIPPEHM-NGQVSILGDIYSYGILLLEMFT-G 602 (717)
Q Consensus 525 dlkp~NIll~~~~~~kl~Dfg~~~~~~~~~~~~~~~~~~~~~~~~~~~y~aPE~~-~~~~~~~sDvwslG~vl~ellt-g 602 (717)
||||+||+++.++.+||+|||.+...... ..........+++.|+|||++ .+.++.++|||||||++|+|++ |
T Consensus 170 dlkp~Nil~~~~~~~kl~Dfg~~~~~~~~-----~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~ellt~g 244 (313)
T 1t46_A 170 DLAARNILLTHGRITKICDFGLARDIKND-----SNYVVKGNARLPVKWMAPESIFNCVYTFESDVWSYGIFLWELFSLG 244 (313)
T ss_dssp CCSGGGEEEETTTEEEECCCGGGSCTTSC-----TTSEECSSSEECGGGCCHHHHHHCCCCHHHHHHHHHHHHHHHHTTT
T ss_pred CCccceEEEcCCCCEEEcccccccccccc-----ccceeccCCCCcceeeChHHhcCCCCChHHHHHHHHHHHHHHHhCC
Confidence 99999999999999999999999865221 112223345577889999995 4468999999999999999999 9
Q ss_pred CCCCCCCCCCchhhhHHHHhcCChhhhhhcCCCCCCCCCCcHHHHHHHHHHHHHHhhhhhhhcchhhhHHHHHHHHHHhh
Q 005045 603 KRPTGDMFKDDFSIHMFVSMALPDHVMDILDPSMPLDEENDEEQIEEVIEEKEMMIHIDLEVNTKNKLEECFVSVLRIGL 682 (717)
Q Consensus 603 ~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~ 682 (717)
..||........ ........ ..... +..++..+.+++.
T Consensus 245 ~~p~~~~~~~~~-~~~~~~~~--------~~~~~---------------------------------~~~~~~~l~~li~ 282 (313)
T 1t46_A 245 SSPYPGMPVDSK-FYKMIKEG--------FRMLS---------------------------------PEHAPAEMYDIMK 282 (313)
T ss_dssp CCSSTTCCSSHH-HHHHHHHT--------CCCCC---------------------------------CTTSCHHHHHHHH
T ss_pred CCCCCcccchhH-HHHHhccC--------CCCCC---------------------------------cccCCHHHHHHHH
Confidence 999976533221 11111110 00000 1122556889999
Q ss_pred ccCCCCcCCCCCHHHHHHHHHHHHHHH
Q 005045 683 MCSTTSPRERIAMNVVVNNLKTIRNCF 709 (717)
Q Consensus 683 ~cl~~~p~~Rps~~eil~~l~~i~~~~ 709 (717)
+||+.+|++|||+.|+++.|+++..+.
T Consensus 283 ~~l~~dp~~Rps~~ell~~L~~~~~~~ 309 (313)
T 1t46_A 283 TCWDADPLKRPTFKQIVQLIEKQISES 309 (313)
T ss_dssp HHTCSSGGGSCCHHHHHHHHHHHHHHT
T ss_pred HHcCCCchhCcCHHHHHHHHHHHHHHh
Confidence 999999999999999999999988653
No 119
>3a8x_A Protein kinase C IOTA type; transferase; HET: TPO; 2.00A {Homo sapiens} PDB: 3a8w_A* 1zrz_A*
Probab=100.00 E-value=6.2e-39 Score=336.47 Aligned_cols=201 Identities=25% Similarity=0.398 Sum_probs=173.2
Q ss_pred cccccccccccCcccccceEEEEeC-CCchhhhHHhHhh---hhhHHHHHHHHHHHHhcC-CCCceeEEEEeeccccCCC
Q 005045 387 STDNFSKENLIGTGSFGSVYKGTLG-DGTIVAIKVLKLQ---QQGALKSFIDECNALKST-RHRNILRVITACSSVDLEG 461 (717)
Q Consensus 387 ~~~~y~~~~~ig~g~~g~v~~~~~~-~~~~vavK~~~~~---~~~~~~~~~~e~~~l~~l-~h~ni~~~~~~~~~~~~~~ 461 (717)
..++|++.+.||+|+||.||+|+++ +++.||+|++... .....+.+.+|+.+++++ +||||+++++++ ..
T Consensus 7 ~~~~y~~~~~lG~G~fg~V~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~E~~~l~~~~~hp~iv~l~~~~-----~~ 81 (345)
T 3a8x_A 7 GLQDFDLLRVIGRGSYAKVLLVRLKKTDRIYAMKVVKKELVNDDEDIDWVQTEKHVFEQASNHPFLVGLHSCF-----QT 81 (345)
T ss_dssp CGGGEEEEEEEEECSSEEEEEEEETTTTEEEEEEEEEGGGSCSHHHHHHHHHHHHHHHHTTTCTTBCCEEEEE-----EC
T ss_pred chhheEEEEEEEecCCeEEEEEEECCCCCEEEEEEEEhHHhcchHHHHHHHHHHHHHHhcCCCCccCeEEEEE-----Ee
Confidence 3578999999999999999999965 7899999998754 234456788999999988 899999999995 44
Q ss_pred CceEEEEEecCCCCChhhhccCCCCCcccccccCHHHHHHHHHHHHHHHHHHHhcCCCCeeecCCCCCCEEeCCCCceEE
Q 005045 462 NDFKALVFEFMSNGNLDQWLHPSPAEHYQFKKLSVIQRLNIAIDVASALDYLHHHCDTPIAHCDLKPSNVLLDKDMTAHV 541 (717)
Q Consensus 462 ~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~dlkp~NIll~~~~~~kl 541 (717)
.+..|+||||+++++|.+++... ..+++..++.++.||+.||+|||+. +|+||||||+||+++.+|.+||
T Consensus 82 ~~~~~lv~e~~~gg~L~~~l~~~-------~~l~~~~~~~~~~qi~~aL~~LH~~---~ivHrDlkp~NIll~~~g~~kL 151 (345)
T 3a8x_A 82 ESRLFFVIEYVNGGDLMFHMQRQ-------RKLPEEHARFYSAEISLALNYLHER---GIIYRDLKLDNVLLDSEGHIKL 151 (345)
T ss_dssp SSEEEEEECCCCSCBHHHHHHHH-------SSCCHHHHHHHHHHHHHHHHHHHHT---TCBCCCCCGGGEEECTTSCEEE
T ss_pred CCEEEEEEeCCCCCcHHHHHHHc-------CCCCHHHHHHHHHHHHHHHHHHHHC---CceecCCCHHHEEECCCCCEEE
Confidence 56899999999999999998743 5689999999999999999999998 9999999999999999999999
Q ss_pred eeeccchhcccccCCCCCCcceeecccccccccCCCccCC-CCCcccchhhHHHHHHHHHhCCCCCCCC
Q 005045 542 GDFGLAKFLFEISDNPSKNQTVSIGLKGSIGYIPPEHMNG-QVSILGDIYSYGILLLEMFTGKRPTGDM 609 (717)
Q Consensus 542 ~Dfg~~~~~~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~-~~~~~sDvwslG~vl~elltg~~p~~~~ 609 (717)
+|||+++.... .........||+.|+|||++.+ .++.++|||||||++|||++|..||...
T Consensus 152 ~DFG~a~~~~~-------~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~ell~g~~pf~~~ 213 (345)
T 3a8x_A 152 TDYGMCKEGLR-------PGDTTSTFCGTPNYIAPEILRGEDYGFSVDWWALGVLMFEMMAGRSPFDIV 213 (345)
T ss_dssp CCGGGCBCSCC-------TTCCBCCCCSCGGGCCHHHHTTCCBCTHHHHHHHHHHHHHHHHSSCTTTTT
T ss_pred EeccccccccC-------CCCcccccCCCccccCccccCCCCCChHHhHHHHHHHHHHHHhCCCCcCCc
Confidence 99999975311 1112334679999999999765 5899999999999999999999999653
No 120
>3lxp_A Non-receptor tyrosine-protein kinase TYK2; JAK3, inflammation, cancer, PAN inhibitor, ATP-binding nucleotide-binding, phosphoprotein, SH2 domain; HET: PTR IZA; 1.65A {Homo sapiens} PDB: 3lxn_A* 3nz0_A* 3nyx_A* 4e20_A* 4e1z_A*
Probab=100.00 E-value=5.6e-39 Score=334.05 Aligned_cols=277 Identities=24% Similarity=0.363 Sum_probs=209.7
Q ss_pred ccccccc-ccccccCcccccceEEEEeC-----CCchhhhHHhHhhh-hhHHHHHHHHHHHHhcCCCCceeEEEEeeccc
Q 005045 385 SKSTDNF-SKENLIGTGSFGSVYKGTLG-----DGTIVAIKVLKLQQ-QGALKSFIDECNALKSTRHRNILRVITACSSV 457 (717)
Q Consensus 385 ~~~~~~y-~~~~~ig~g~~g~v~~~~~~-----~~~~vavK~~~~~~-~~~~~~~~~e~~~l~~l~h~ni~~~~~~~~~~ 457 (717)
....++| ++.++||+|+||.||++++. +++.||+|++.... ....+.+.+|++++++++||||+++++++...
T Consensus 26 ~~~~~r~~~~~~~lG~G~~g~V~~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~ 105 (318)
T 3lxp_A 26 TVFHKRYLKKIRDLGEGHFGKVSLYCYDPTNDGTGEMVAVKALKADAGPQHRSGWKQEIDILRTLYHEHIIKYKGCCEDA 105 (318)
T ss_dssp CBCCGGGEEEEEEEEECSSEEEEEEEECSCC--CCEEEEEEEECTTCCHHHHHHHHHHHHHHHHCCCTTBCCEEEEEEET
T ss_pred ceecHHHHhhhheecCCCCeEEEEEEEccCCCCCCcEEEEEEeccccChHHHHHHHHHHHHHHhCCCcchhhEEEEEecC
Confidence 3345566 99999999999999988642 68889999987543 34467789999999999999999999997542
Q ss_pred cCCCCceEEEEEecCCCCChhhhccCCCCCcccccccCHHHHHHHHHHHHHHHHHHHhcCCCCeeecCCCCCCEEeCCCC
Q 005045 458 DLEGNDFKALVFEFMSNGNLDQWLHPSPAEHYQFKKLSVIQRLNIAIDVASALDYLHHHCDTPIAHCDLKPSNVLLDKDM 537 (717)
Q Consensus 458 ~~~~~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~dlkp~NIll~~~~ 537 (717)
.....++||||+++++|.+++... .+++..+..++.||+.||+|||+. +|+||||||+||+++.++
T Consensus 106 ---~~~~~~lv~e~~~~~~L~~~l~~~--------~~~~~~~~~i~~~l~~~l~~LH~~---~ivH~Dikp~Nil~~~~~ 171 (318)
T 3lxp_A 106 ---GAASLQLVMEYVPLGSLRDYLPRH--------SIGLAQLLLFAQQICEGMAYLHAQ---HYIHRDLAARNVLLDNDR 171 (318)
T ss_dssp ---TTTEEEEEECCCTTCBHHHHGGGS--------CCCHHHHHHHHHHHHHHHHHHHHT---TEECSCCSGGGEEECTTC
T ss_pred ---CCceEEEEEecccCCcHHHHHhhC--------CCCHHHHHHHHHHHHHHHHHHHhC---CccCCCCchheEEEcCCC
Confidence 245789999999999999999643 489999999999999999999998 999999999999999999
Q ss_pred ceEEeeeccchhcccccCCCCCCcceeecccccccccCCCccCC-CCCcccchhhHHHHHHHHHhCCCCCCCCCCCchhh
Q 005045 538 TAHVGDFGLAKFLFEISDNPSKNQTVSIGLKGSIGYIPPEHMNG-QVSILGDIYSYGILLLEMFTGKRPTGDMFKDDFSI 616 (717)
Q Consensus 538 ~~kl~Dfg~~~~~~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~-~~~~~sDvwslG~vl~elltg~~p~~~~~~~~~~~ 616 (717)
.+||+|||.+...... ...........++..|+|||++.+ .++.++|||||||++|+|++|..||.......
T Consensus 172 ~~kl~Dfg~a~~~~~~----~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~ll~g~~p~~~~~~~~--- 244 (318)
T 3lxp_A 172 LVKIGDFGLAKAVPEG----HEYYRVREDGDSPVFWYAPECLKEYKFYYASDVWSFGVTLYELLTHCDSSQSPPTKF--- 244 (318)
T ss_dssp CEEECCGGGCEECCTT----CSEEEC---CCCCGGGCCHHHHHHCEEEHHHHHHHHHHHHHHHHTTTCGGGSHHHHH---
T ss_pred CEEECCcccccccccc----ccccccccCCCCCceeeChHHhcCCCCCcHHHHHHHHHHHHHHHhCCCcccccchhh---
Confidence 9999999999865211 111122234457888999999655 57899999999999999999999986421110
Q ss_pred hHHHHhcCC----hhhhhhcCCCCCCCCCCcHHHHHHHHHHHHHHhhhhhhhcchhhhHHHHHHHHHHhhccCCCCcCCC
Q 005045 617 HMFVSMALP----DHVMDILDPSMPLDEENDEEQIEEVIEEKEMMIHIDLEVNTKNKLEECFVSVLRIGLMCSTTSPRER 692 (717)
Q Consensus 617 ~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~cl~~~p~~R 692 (717)
......... ..+.+.+.... ....+..++..+.+++.+||+.+|++|
T Consensus 245 ~~~~~~~~~~~~~~~~~~~~~~~~-----------------------------~~~~~~~~~~~l~~li~~~l~~dP~~R 295 (318)
T 3lxp_A 245 LELIGIAQGQMTVLRLTELLERGE-----------------------------RLPRPDKCPAEVYHLMKNCWETEASFR 295 (318)
T ss_dssp HHHHCSCCHHHHHHHHHHHHHTTC-----------------------------CCCCCTTCCHHHHHHHHHHTCSSGGGS
T ss_pred hhhhcccccchhHHHHHHHHhccc-----------------------------CCCCCccccHHHHHHHHHHcCCCcccC
Confidence 000000000 00111111110 011223346778999999999999999
Q ss_pred CCHHHHHHHHHHHHHHHHh
Q 005045 693 IAMNVVVNNLKTIRNCFLE 711 (717)
Q Consensus 693 ps~~eil~~l~~i~~~~~~ 711 (717)
||++|+++.|+.+.++...
T Consensus 296 ps~~ell~~L~~l~~~~~~ 314 (318)
T 3lxp_A 296 PTFENLIPILKTVHEKYQG 314 (318)
T ss_dssp CCHHHHHHHHHHHHHHHHC
T ss_pred cCHHHHHHHHHHHHHhhcc
Confidence 9999999999999987754
No 121
>1u59_A Tyrosine-protein kinase ZAP-70; transferase; HET: STU; 2.30A {Homo sapiens} SCOP: d.144.1.7
Probab=100.00 E-value=5.4e-39 Score=329.17 Aligned_cols=266 Identities=24% Similarity=0.360 Sum_probs=209.5
Q ss_pred cccccccccccc-ccCcccccceEEEEeC---CCchhhhHHhHhh-hhhHHHHHHHHHHHHhcCCCCceeEEEEeecccc
Q 005045 384 ISKSTDNFSKEN-LIGTGSFGSVYKGTLG---DGTIVAIKVLKLQ-QQGALKSFIDECNALKSTRHRNILRVITACSSVD 458 (717)
Q Consensus 384 ~~~~~~~y~~~~-~ig~g~~g~v~~~~~~---~~~~vavK~~~~~-~~~~~~~~~~e~~~l~~l~h~ni~~~~~~~~~~~ 458 (717)
+....++|.+.+ .||+|+||.||+|.+. +++.||+|++... .....+.+.+|++++++++||||+++++++.
T Consensus 4 ~~~~~~~~~i~~~~lg~G~~g~Vy~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~h~~i~~~~~~~~--- 80 (287)
T 1u59_A 4 LFLKRDNLLIADIELGCGNFGSVRQGVYRMRKKQIDVAIKVLKQGTEKADTEEMMREAQIMHQLDNPYIVRLIGVCQ--- 80 (287)
T ss_dssp CBCCGGGEEEEEEEEECCTTEEEEEEEEC---CCEEEEEEEECSSCCHHHHHHHHHHHHHHHHCCCTTBCCEEEEEE---
T ss_pred ccccHHHhhhhhccccccCceeEEEeEeccCCCcceEEEEecCCccchhHHHHHHHHHHHHHhCCCCCEeEEEEEec---
Confidence 345567888887 9999999999999853 6788999998754 2345678899999999999999999999862
Q ss_pred CCCCceEEEEEecCCCCChhhhccCCCCCcccccccCHHHHHHHHHHHHHHHHHHHhcCCCCeeecCCCCCCEEeCCCCc
Q 005045 459 LEGNDFKALVFEFMSNGNLDQWLHPSPAEHYQFKKLSVIQRLNIAIDVASALDYLHHHCDTPIAHCDLKPSNVLLDKDMT 538 (717)
Q Consensus 459 ~~~~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~dlkp~NIll~~~~~ 538 (717)
.+..++||||+++++|.+++.... ..+++..+..++.||+.||.|||+. +++||||||+||+++.++.
T Consensus 81 ---~~~~~lv~e~~~~~~L~~~l~~~~------~~~~~~~~~~~~~qi~~~l~~lH~~---~i~H~dlkp~Nili~~~~~ 148 (287)
T 1u59_A 81 ---AEALMLVMEMAGGGPLHKFLVGKR------EEIPVSNVAELLHQVSMGMKYLEEK---NFVHRDLAARNVLLVNRHY 148 (287)
T ss_dssp ---SSSEEEEEECCTTEEHHHHHTTCT------TTSCHHHHHHHHHHHHHHHHHHHHT---TEECCCCSGGGEEEEETTE
T ss_pred ---CCCcEEEEEeCCCCCHHHHHHhCC------ccCCHHHHHHHHHHHHHHHHHHHHC---CEeeCCCchheEEEcCCCC
Confidence 235899999999999999987542 5689999999999999999999998 9999999999999999999
Q ss_pred eEEeeeccchhcccccCCCCCCcceeecccccccccCCCccC-CCCCcccchhhHHHHHHHHHh-CCCCCCCCCCCchhh
Q 005045 539 AHVGDFGLAKFLFEISDNPSKNQTVSIGLKGSIGYIPPEHMN-GQVSILGDIYSYGILLLEMFT-GKRPTGDMFKDDFSI 616 (717)
Q Consensus 539 ~kl~Dfg~~~~~~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~-~~~~~~sDvwslG~vl~ellt-g~~p~~~~~~~~~~~ 616 (717)
+||+|||.+....... ..........+++.|+|||++. +.++.++|||||||++|+|++ |..||....... .
T Consensus 149 ~kl~Dfg~~~~~~~~~----~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~ellt~g~~p~~~~~~~~--~ 222 (287)
T 1u59_A 149 AKISDFGLSKALGADD----SYYTARSAGKWPLKWYAPECINFRKFSSRSDVWSYGVTMWEALSYGQKPYKKMKGPE--V 222 (287)
T ss_dssp EEECCCTTCEECTTCS----CEECCCCSSCCCGGGCCHHHHHHCEECHHHHHHHHHHHHHHHHTTSCCTTTTCCTHH--H
T ss_pred EEECcccceeeeccCc----ceeeccccccccccccCHHHhccCCCCchhhHHHHHHHHHHHHcCCCCCcccCCHHH--H
Confidence 9999999998652211 1111122334678899999975 458999999999999999998 999997643221 1
Q ss_pred hHHHHhcCChhhhhhcCCCCCCCCCCcHHHHHHHHHHHHHHhhhhhhhcchhhhHHHHHHHHHHhhccCCCCcCCCCCHH
Q 005045 617 HMFVSMALPDHVMDILDPSMPLDEENDEEQIEEVIEEKEMMIHIDLEVNTKNKLEECFVSVLRIGLMCSTTSPRERIAMN 696 (717)
Q Consensus 617 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~cl~~~p~~Rps~~ 696 (717)
....... .... .+..++..+.+++.+||+.+|++|||+.
T Consensus 223 ~~~i~~~--------~~~~---------------------------------~~~~~~~~l~~li~~~l~~~p~~Rps~~ 261 (287)
T 1u59_A 223 MAFIEQG--------KRME---------------------------------CPPECPPELYALMSDCWIYKWEDRPDFL 261 (287)
T ss_dssp HHHHHTT--------CCCC---------------------------------CCTTCCHHHHHHHHHTTCSSGGGSCCHH
T ss_pred HHHHhcC--------CcCC---------------------------------CCCCcCHHHHHHHHHHcCCChhhCcCHH
Confidence 1111110 0000 1112356788999999999999999999
Q ss_pred HHHHHHHHHHHHHHh
Q 005045 697 VVVNNLKTIRNCFLE 711 (717)
Q Consensus 697 eil~~l~~i~~~~~~ 711 (717)
|+++.|+++..+...
T Consensus 262 ~l~~~l~~~~~~~~~ 276 (287)
T 1u59_A 262 TVEQRMRACYYSLAS 276 (287)
T ss_dssp HHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHhcCC
Confidence 999999999877654
No 122
>3dtc_A Mitogen-activated protein kinase kinase kinase 9; mixed-lineage kinase, MLK family, MLK1 and MLK3 subtype selective inhibitors; HET: VIN; 2.60A {Homo sapiens} SCOP: d.144.1.0
Probab=100.00 E-value=6.4e-39 Score=325.81 Aligned_cols=252 Identities=26% Similarity=0.433 Sum_probs=191.5
Q ss_pred ccccccccccccCcccccceEEEEeCCCchhhhHHhHhhhh----hHHHHHHHHHHHHhcCCCCceeEEEEeeccccCCC
Q 005045 386 KSTDNFSKENLIGTGSFGSVYKGTLGDGTIVAIKVLKLQQQ----GALKSFIDECNALKSTRHRNILRVITACSSVDLEG 461 (717)
Q Consensus 386 ~~~~~y~~~~~ig~g~~g~v~~~~~~~~~~vavK~~~~~~~----~~~~~~~~e~~~l~~l~h~ni~~~~~~~~~~~~~~ 461 (717)
...++|++.+.||+|+||.||+|.+. ++.||+|++..... ...+.+.+|+++++.++||||+++++++. .
T Consensus 4 ~~~~~~~~~~~lg~G~~g~V~~~~~~-~~~vavK~~~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~-----~ 77 (271)
T 3dtc_A 4 IDFAELTLEEIIGIGGFGKVYRAFWI-GDEVAVKAARHDPDEDISQTIENVRQEAKLFAMLKHPNIIALRGVCL-----K 77 (271)
T ss_dssp CCTTSEEEEEEEEEETTEEEEEEEET-TEEEEEEEC----------CHHHHHHHHHHHHHCCCTTBCCEEEEEC-----C
T ss_pred cchhheeeeeeeccCCCeEEEEEEEc-CCeEEEEEEecCCcccHHHHHHHHHHHHHHHHhcCCCCEeeEEEEEe-----c
Confidence 34678999999999999999999985 88899999875422 23577889999999999999999999953 4
Q ss_pred CceEEEEEecCCCCChhhhccCCCCCcccccccCHHHHHHHHHHHHHHHHHHHhcCCCC---eeecCCCCCCEEeCC---
Q 005045 462 NDFKALVFEFMSNGNLDQWLHPSPAEHYQFKKLSVIQRLNIAIDVASALDYLHHHCDTP---IAHCDLKPSNVLLDK--- 535 (717)
Q Consensus 462 ~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~i~~~i~~~l~~LH~~~~~~---ivH~dlkp~NIll~~--- 535 (717)
.+..++||||+++++|.+++.. ..+++..+..++.|++.|++|||+. + |+||||||+||+++.
T Consensus 78 ~~~~~lv~e~~~~~~L~~~~~~--------~~~~~~~~~~i~~~l~~~l~~lH~~---~~~~i~H~dikp~Nil~~~~~~ 146 (271)
T 3dtc_A 78 EPNLCLVMEFARGGPLNRVLSG--------KRIPPDILVNWAVQIARGMNYLHDE---AIVPIIHRDLKSSNILILQKVE 146 (271)
T ss_dssp C--CEEEEECCTTEEHHHHHTS--------SCCCHHHHHHHHHHHHHHHHHHHHS---SSSCCCCSCCSGGGEEESSCCS
T ss_pred CCceEEEEEcCCCCCHHHHhhc--------CCCCHHHHHHHHHHHHHHHHHHHhC---CCCceeecCCchHHEEEecccc
Confidence 4578999999999999999853 4589999999999999999999998 7 999999999999986
Q ss_pred -----CCceEEeeeccchhcccccCCCCCCcceeecccccccccCCCccCC-CCCcccchhhHHHHHHHHHhCCCCCCCC
Q 005045 536 -----DMTAHVGDFGLAKFLFEISDNPSKNQTVSIGLKGSIGYIPPEHMNG-QVSILGDIYSYGILLLEMFTGKRPTGDM 609 (717)
Q Consensus 536 -----~~~~kl~Dfg~~~~~~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~-~~~~~sDvwslG~vl~elltg~~p~~~~ 609 (717)
++.+||+|||.+...... ......|++.|+|||.+.+ .++.++|||||||++|+|++|..||...
T Consensus 147 ~~~~~~~~~kl~Dfg~~~~~~~~---------~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~~l~~l~~g~~p~~~~ 217 (271)
T 3dtc_A 147 NGDLSNKILKITDFGLAREWHRT---------TKMSAAGAYAWMAPEVIRASMFSKGSDVWSYGVLLWELLTGEVPFRGI 217 (271)
T ss_dssp SSCCSSCCEEECCCCC----------------------CCGGGSCHHHHHHCCCSHHHHHHHHHHHHHHHHHCCCTTTTS
T ss_pred cccccCcceEEccCCcccccccc---------cccCCCCccceeCHHHhccCCCCchhhHHHHHHHHHHHHhCCCCCCCC
Confidence 678999999999865211 1123468999999999654 5899999999999999999999999764
Q ss_pred CCCchhhhHHHHhcCChhhhhhcCCCCCCCCCCcHHHHHHHHHHHHHHhhhhhhhcchhhhHHHHHHHHHHhhccCCCCc
Q 005045 610 FKDDFSIHMFVSMALPDHVMDILDPSMPLDEENDEEQIEEVIEEKEMMIHIDLEVNTKNKLEECFVSVLRIGLMCSTTSP 689 (717)
Q Consensus 610 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~cl~~~p 689 (717)
....... . ......... .+..++..+.+++.+||+.+|
T Consensus 218 ~~~~~~~--~-----------~~~~~~~~~-----------------------------~~~~~~~~~~~li~~~l~~~p 255 (271)
T 3dtc_A 218 DGLAVAY--G-----------VAMNKLALP-----------------------------IPSTCPEPFAKLMEDCWNPDP 255 (271)
T ss_dssp CHHHHHH--H-----------HHTSCCCCC-----------------------------CCTTCCHHHHHHHHHHTCSSG
T ss_pred CHHHHHH--h-----------hhcCCCCCC-----------------------------CCcccCHHHHHHHHHHhcCCc
Confidence 2211110 0 000000000 111225668899999999999
Q ss_pred CCCCCHHHHHHHHHHH
Q 005045 690 RERIAMNVVVNNLKTI 705 (717)
Q Consensus 690 ~~Rps~~eil~~l~~i 705 (717)
++|||++|+++.|+++
T Consensus 256 ~~Rps~~e~l~~L~~l 271 (271)
T 3dtc_A 256 HSRPSFTNILDQLTTI 271 (271)
T ss_dssp GGSCCHHHHHHHHHC-
T ss_pred ccCcCHHHHHHHHhcC
Confidence 9999999999999864
No 123
>1rdq_E PKA C-alpha, CAMP-dependent protein kinase, alpha-catalytic SU; CAMP-dependent protein kinase,catalytic mechanism, ATP hydro two nucleotide states; HET: TPO SEP ADP ATP; 1.26A {Mus musculus} SCOP: d.144.1.7 PDB: 2erz_E* 3fjq_E* 1bkx_A* 1atp_E* 1fmo_E* 1j3h_A* 1jlu_E* 1bx6_A* 1re8_A* 1rej_A* 1rek_A* 2cpk_E* 2qcs_A* 2qvs_E* 1l3r_E* 3idb_A* 3idc_A* 3o7l_D* 3ow3_A* 3tnp_C* ...
Probab=100.00 E-value=7.5e-39 Score=336.33 Aligned_cols=246 Identities=22% Similarity=0.276 Sum_probs=199.4
Q ss_pred ccccccccccccCcccccceEEEEeC-CCchhhhHHhHhhh---hhHHHHHHHHHHHHhcCCCCceeEEEEeeccccCCC
Q 005045 386 KSTDNFSKENLIGTGSFGSVYKGTLG-DGTIVAIKVLKLQQ---QGALKSFIDECNALKSTRHRNILRVITACSSVDLEG 461 (717)
Q Consensus 386 ~~~~~y~~~~~ig~g~~g~v~~~~~~-~~~~vavK~~~~~~---~~~~~~~~~e~~~l~~l~h~ni~~~~~~~~~~~~~~ 461 (717)
...++|++.+.||+|+||.||+|+++ +|+.||+|++.... ......+.+|+++++.++||||+++++++ .+
T Consensus 38 ~~~~~y~~~~~lG~G~~g~V~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~E~~~l~~l~hp~iv~~~~~~-----~~ 112 (350)
T 1rdq_E 38 AQLDQFDRIKTLGTGSFGRVMLVKHKESGNHYAMKILDKQKVVKLKQIEHTLNEKRILQAVNFPFLVKLEFSF-----KD 112 (350)
T ss_dssp CCGGGEEEEEEEEECSSCEEEEEEETTTCCEEEEEEEEHHHHHHTTCHHHHHHHHHHHTTCCCTTBCCEEEEE-----EC
T ss_pred CCHHHCEEEEEeecCcCcEEEEEEECCCCCEEEEEEEEhHHhccHHHHHHHHHHHHHHHhCCCCCCCeEEEEE-----Ec
Confidence 45679999999999999999999965 79999999986442 23457788999999999999999999985 44
Q ss_pred CceEEEEEecCCCCChhhhccCCCCCcccccccCHHHHHHHHHHHHHHHHHHHhcCCCCeeecCCCCCCEEeCCCCceEE
Q 005045 462 NDFKALVFEFMSNGNLDQWLHPSPAEHYQFKKLSVIQRLNIAIDVASALDYLHHHCDTPIAHCDLKPSNVLLDKDMTAHV 541 (717)
Q Consensus 462 ~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~dlkp~NIll~~~~~~kl 541 (717)
.+..|+||||+++++|.+++... ..+++..++.++.||+.||+|||+. +|+||||||+||+++.+|.+||
T Consensus 113 ~~~~~lv~e~~~gg~L~~~l~~~-------~~~~~~~~~~~~~qi~~aL~~LH~~---~ivHrDlkp~NIll~~~g~~kL 182 (350)
T 1rdq_E 113 NSNLYMVMEYVAGGEMFSHLRRI-------GRFSEPHARFYAAQIVLTFEYLHSL---DLIYRDLKPENLLIDQQGYIQV 182 (350)
T ss_dssp SSEEEEEEECCTTCBHHHHHHHH-------CCCCHHHHHHHHHHHHHHHHHHHHT---TEECCCCSGGGEEECTTSCEEE
T ss_pred CCEEEEEEcCCCCCcHHHHHHHc-------CCCCHHHHHHHHHHHHHHHHHHHHC---CcccccCccceEEECCCCCEEE
Confidence 56899999999999999999754 5689999999999999999999998 9999999999999999999999
Q ss_pred eeeccchhcccccCCCCCCcceeecccccccccCCCccCC-CCCcccchhhHHHHHHHHHhCCCCCCCCCCCchhhhHHH
Q 005045 542 GDFGLAKFLFEISDNPSKNQTVSIGLKGSIGYIPPEHMNG-QVSILGDIYSYGILLLEMFTGKRPTGDMFKDDFSIHMFV 620 (717)
Q Consensus 542 ~Dfg~~~~~~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~-~~~~~sDvwslG~vl~elltg~~p~~~~~~~~~~~~~~~ 620 (717)
+|||.+..... ......||+.|+|||++.+ .++.++|||||||++|+|++|..||...... .....
T Consensus 183 ~DFg~a~~~~~----------~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~ell~g~~Pf~~~~~~--~~~~~- 249 (350)
T 1rdq_E 183 TDFGFAKRVKG----------RTWTLCGTPEALAPEIILSKGYNKAVDWWALGVLIYEMAAGYPPFFADQPI--QIYEK- 249 (350)
T ss_dssp CCCTTCEECSS----------CBCCCEECGGGCCHHHHTTCCBCTHHHHHHHHHHHHHHHHSSCSSCCSSHH--HHHHH-
T ss_pred cccccceeccC----------CcccccCCccccCHHHhcCCCCCCcCCEecccHhHhHHhhCCCCCCCCCHH--HHHHH-
Confidence 99999986521 1223568999999999655 5899999999999999999999999753211 11111
Q ss_pred HhcCChhhhhhcCCCCCCCCCCcHHHHHHHHHHHHHHhhhhhhhcchhhhHHHHHHHHHHhhccCCCCcCCCCC-----H
Q 005045 621 SMALPDHVMDILDPSMPLDEENDEEQIEEVIEEKEMMIHIDLEVNTKNKLEECFVSVLRIGLMCSTTSPRERIA-----M 695 (717)
Q Consensus 621 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~cl~~~p~~Rps-----~ 695 (717)
+....... +..++..+.+++.+||+.+|++||+ +
T Consensus 250 ----------i~~~~~~~-------------------------------p~~~~~~~~~li~~lL~~dp~~R~~~~~~~~ 288 (350)
T 1rdq_E 250 ----------IVSGKVRF-------------------------------PSHFSSDLKDLLRNLLQVDLTKRFGNLKNGV 288 (350)
T ss_dssp ----------HHHCCCCC-------------------------------CTTCCHHHHHHHHHHSCSCTTTCTTSSTTTT
T ss_pred ----------HHcCCCCC-------------------------------CCCCCHHHHHHHHHHhhcCHHhccCCccCCH
Confidence 11111100 0112456789999999999999998 8
Q ss_pred HHHHH
Q 005045 696 NVVVN 700 (717)
Q Consensus 696 ~eil~ 700 (717)
+||++
T Consensus 289 ~ei~~ 293 (350)
T 1rdq_E 289 NDIKN 293 (350)
T ss_dssp HHHHT
T ss_pred HHHHh
Confidence 88865
No 124
>3t9t_A Tyrosine-protein kinase ITK/TSK; kinase domain, alpha/beta, ATP binding, phosphorylation, intracellular, transferase-transferase inhibitor complex; HET: IAQ; 1.65A {Homo sapiens} PDB: 3v5l_A* 3v5j_A* 3v8t_A* 3v8w_A* 1sm2_A* 1snu_A* 1snx_A 3qgw_A* 3qgy_A* 3miy_A* 3mj1_A* 3mj2_A*
Probab=100.00 E-value=3.4e-39 Score=327.06 Aligned_cols=260 Identities=25% Similarity=0.400 Sum_probs=207.2
Q ss_pred cccccccccccccCcccccceEEEEeCCCchhhhHHhHhhhhhHHHHHHHHHHHHhcCCCCceeEEEEeeccccCCCCce
Q 005045 385 SKSTDNFSKENLIGTGSFGSVYKGTLGDGTIVAIKVLKLQQQGALKSFIDECNALKSTRHRNILRVITACSSVDLEGNDF 464 (717)
Q Consensus 385 ~~~~~~y~~~~~ig~g~~g~v~~~~~~~~~~vavK~~~~~~~~~~~~~~~e~~~l~~l~h~ni~~~~~~~~~~~~~~~~~ 464 (717)
....++|++.+.||+|++|.||.|.+.+++.||+|++...... .+.+.+|++++++++||||+++++++. ..+.
T Consensus 4 ~i~~~~y~~~~~lg~G~~g~V~~~~~~~~~~vaiK~~~~~~~~-~~~~~~e~~~l~~l~h~~i~~~~~~~~-----~~~~ 77 (267)
T 3t9t_A 4 VIDPSELTFVQEIGSGQFGLVHLGYWLNKDKVAIKTIREGAMS-EEDFIEEAEVMMKLSHPKLVQLYGVCL-----EQAP 77 (267)
T ss_dssp BCCGGGEEEEEEEEEETTEEEEEEEETTTEEEEEEEECTTTBC-HHHHHHHHHHHHTCCCTTBCCEEEEEC-----SSSS
T ss_pred EEchhheeeeeEecCCCceeEEEEEecCCCeEEEEEccccCCC-HHHHHHHHHHHHhCCCCCEeeEEEEEc-----cCCC
Confidence 3456799999999999999999999888889999998755432 367889999999999999999999953 4457
Q ss_pred EEEEEecCCCCChhhhccCCCCCcccccccCHHHHHHHHHHHHHHHHHHHhcCCCCeeecCCCCCCEEeCCCCceEEeee
Q 005045 465 KALVFEFMSNGNLDQWLHPSPAEHYQFKKLSVIQRLNIAIDVASALDYLHHHCDTPIAHCDLKPSNVLLDKDMTAHVGDF 544 (717)
Q Consensus 465 ~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~dlkp~NIll~~~~~~kl~Df 544 (717)
.++||||+++++|.+++.... ..+++..+..++.|++.||+|||+. +++||||||+||+++.++.+||+||
T Consensus 78 ~~lv~e~~~~~~L~~~~~~~~------~~~~~~~~~~~~~~i~~~l~~lH~~---~i~H~dl~p~Nili~~~~~~kl~df 148 (267)
T 3t9t_A 78 ICLVTEFMEHGCLSDYLRTQR------GLFAAETLLGMCLDVCEGMAYLEEA---CVIHRDLAARNCLVGENQVIKVSDF 148 (267)
T ss_dssp CEEEECCCTTCBHHHHHHHTT------TCCCHHHHHHHHHHHHHHHHHHHHT---TCCCSSCCGGGEEECGGGCEEECCT
T ss_pred eEEEEeCCCCCcHHHHHhhCc------ccCCHHHHHHHHHHHHHHHHHHHhC---CcccCCCchheEEECCCCCEEEccc
Confidence 899999999999999997542 4689999999999999999999998 9999999999999999999999999
Q ss_pred ccchhcccccCCCCCCcceeecccccccccCCCccC-CCCCcccchhhHHHHHHHHHh-CCCCCCCCCCCchhhhHHHHh
Q 005045 545 GLAKFLFEISDNPSKNQTVSIGLKGSIGYIPPEHMN-GQVSILGDIYSYGILLLEMFT-GKRPTGDMFKDDFSIHMFVSM 622 (717)
Q Consensus 545 g~~~~~~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~-~~~~~~sDvwslG~vl~ellt-g~~p~~~~~~~~~~~~~~~~~ 622 (717)
|.+....... ........++..|+|||++. +.++.++||||||+++|+|++ |..||....... .......
T Consensus 149 g~~~~~~~~~------~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~~g~~p~~~~~~~~--~~~~i~~ 220 (267)
T 3t9t_A 149 GMTRFVLDDQ------YTSSTGTKFPVKWASPEVFSFSRYSSKSDVWSFGVLMWEVFSEGKIPYENRSNSE--VVEDIST 220 (267)
T ss_dssp TGGGGBCCHH------HHSTTSTTCCGGGCCHHHHHHCCCCHHHHHHHHHHHHHHHHTTSCCTTTTCCHHH--HHHHHHT
T ss_pred cccccccccc------ccccccccccccccChhhhcCCCccchhchhhhHHHHHHHhccCCCCCCCCCHHH--HHHHHhc
Confidence 9998652111 11112344677899999965 458999999999999999999 899997542211 1111110
Q ss_pred cCChhhhhhcCCCCCCCCCCcHHHHHHHHHHHHHHhhhhhhhcchhhhHHHHHHHHHHhhccCCCCcCCCCCHHHHHHHH
Q 005045 623 ALPDHVMDILDPSMPLDEENDEEQIEEVIEEKEMMIHIDLEVNTKNKLEECFVSVLRIGLMCSTTSPRERIAMNVVVNNL 702 (717)
Q Consensus 623 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~cl~~~p~~Rps~~eil~~l 702 (717)
. ..... +..++..+.+++.+||+.+|++|||++|+++.|
T Consensus 221 ~--------~~~~~---------------------------------~~~~~~~l~~li~~~l~~~p~~Rps~~~ll~~L 259 (267)
T 3t9t_A 221 G--------FRLYK---------------------------------PRLASTHVYQIMNHCWRERPEDRPAFSRLLRQL 259 (267)
T ss_dssp T--------CCCCC---------------------------------CTTSCHHHHHHHHHHTCSSGGGSCCHHHHHHHH
T ss_pred C--------CcCCC---------------------------------CccCcHHHHHHHHHHccCChhhCcCHHHHHHHH
Confidence 0 00000 011245678999999999999999999999999
Q ss_pred HHHHHH
Q 005045 703 KTIRNC 708 (717)
Q Consensus 703 ~~i~~~ 708 (717)
+++.++
T Consensus 260 ~~l~~~ 265 (267)
T 3t9t_A 260 AEIAES 265 (267)
T ss_dssp HHHHHC
T ss_pred HHHHhc
Confidence 999864
No 125
>3ork_A Serine/threonine protein kinase; structural genomics, TB structural genomics consortium, TBSG domain, signal transduction; HET: AGS; 1.60A {Mycobacterium tuberculosis} PDB: 3ori_A* 3orl_A* 3oro_A* 3orp_A* 3ort_A* 3f61_A* 1mru_A* 3f69_A* 3orm_A* 1o6y_A* 2fum_A*
Probab=100.00 E-value=1.2e-39 Score=338.07 Aligned_cols=266 Identities=21% Similarity=0.350 Sum_probs=196.7
Q ss_pred ccccccccccccCcccccceEEEEe-CCCchhhhHHhHhh---hhhHHHHHHHHHHHHhcCCCCceeEEEEeeccccCCC
Q 005045 386 KSTDNFSKENLIGTGSFGSVYKGTL-GDGTIVAIKVLKLQ---QQGALKSFIDECNALKSTRHRNILRVITACSSVDLEG 461 (717)
Q Consensus 386 ~~~~~y~~~~~ig~g~~g~v~~~~~-~~~~~vavK~~~~~---~~~~~~~~~~e~~~l~~l~h~ni~~~~~~~~~~~~~~ 461 (717)
...++|++.+.||+|+||.||+|++ .+++.||+|++... .......+.+|++++++++||||+++++++.... ..
T Consensus 9 ~~~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~E~~~l~~l~hp~iv~~~~~~~~~~-~~ 87 (311)
T 3ork_A 9 HLSDRYELGEILGFGGMSEVHLARDLRDHRDVAVKVLRADLARDPSFYLRFRREAQNAAALNHPAIVAVYDTGEAET-PA 87 (311)
T ss_dssp EETTTEEEEEEEEECSSEEEEEEEETTTTEEEEEEEECTTTTTSHHHHHHHHHHHTTCCCCCCTTBCCEEEEEEEEE-TT
T ss_pred eecCcEEEEEEEccCCCEEEEEEEECCCCceEEEEEeCccccCCHHHHHHHHHHHHHHHcCCCCCcceEEEeeeccC-CC
Confidence 4467999999999999999999996 48999999998654 2344577899999999999999999999865432 22
Q ss_pred CceEEEEEecCCCCChhhhccCCCCCcccccccCHHHHHHHHHHHHHHHHHHHhcCCCCeeecCCCCCCEEeCCCCceEE
Q 005045 462 NDFKALVFEFMSNGNLDQWLHPSPAEHYQFKKLSVIQRLNIAIDVASALDYLHHHCDTPIAHCDLKPSNVLLDKDMTAHV 541 (717)
Q Consensus 462 ~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~dlkp~NIll~~~~~~kl 541 (717)
....|+||||+++++|.+++... ..+++..+..++.||+.||+|||+. +|+||||||+||+++.++.+||
T Consensus 88 ~~~~~lv~e~~~g~~L~~~l~~~-------~~~~~~~~~~~~~qi~~~l~~lH~~---~ivH~dlkp~Nil~~~~~~~kl 157 (311)
T 3ork_A 88 GPLPYIVMEYVDGVTLRDIVHTE-------GPMTPKRAIEVIADACQALNFSHQN---GIIHRDVKPANIMISATNAVKV 157 (311)
T ss_dssp EEEEEEEEECCCEEEHHHHHHHH-------CSCCHHHHHHHHHHHHHHHHHHHHT---TCCCCCCCGGGEEEETTSCEEE
T ss_pred CcccEEEEecCCCCCHHHHHHhc-------CCCCHHHHHHHHHHHHHHHHHHHHC---CCCcCCCCHHHEEEcCCCCEEE
Confidence 23569999999999999999743 5689999999999999999999998 9999999999999999999999
Q ss_pred eeeccchhcccccCCCCCCcceeecccccccccCCCccCC-CCCcccchhhHHHHHHHHHhCCCCCCCCCCCchhhhHHH
Q 005045 542 GDFGLAKFLFEISDNPSKNQTVSIGLKGSIGYIPPEHMNG-QVSILGDIYSYGILLLEMFTGKRPTGDMFKDDFSIHMFV 620 (717)
Q Consensus 542 ~Dfg~~~~~~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~-~~~~~sDvwslG~vl~elltg~~p~~~~~~~~~~~~~~~ 620 (717)
+|||.+........ .........|++.|+|||++.+ .++.++|||||||++|+|++|..||..............
T Consensus 158 ~Dfg~a~~~~~~~~----~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Di~slG~~l~~ll~g~~pf~~~~~~~~~~~~~~ 233 (311)
T 3ork_A 158 MDFGIARAIADSGN----SVTQTAAVIGTAQYLSPEQARGDSVDARSDVYSLGCVLYEVLTGEPPFTGDSPVSVAYQHVR 233 (311)
T ss_dssp CCCSCC----------------------CCTTCCHHHHHTCCCCHHHHHHHHHHHHHHHHHSSCSCCCSSHHHHHHHHHH
T ss_pred eeccCccccccccc----ccccccccCcCcccCCHHHhcCCCCCchHhHHHHHHHHHHHHhCCCCCCCCChHHHHHHHhc
Confidence 99999986532211 1122234568999999999655 589999999999999999999999975432211110000
Q ss_pred HhcCChhhhhhcCCCCCCCCCCcHHHHHHHHHHHHHHhhhhhhhcchhhhHHHHHHHHHHhhccCCCCcCCCCCHHHH-H
Q 005045 621 SMALPDHVMDILDPSMPLDEENDEEQIEEVIEEKEMMIHIDLEVNTKNKLEECFVSVLRIGLMCSTTSPRERIAMNVV-V 699 (717)
Q Consensus 621 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~cl~~~p~~Rps~~ei-l 699 (717)
....+. ......++..+.+++.+||+.+|++||++.++ .
T Consensus 234 ~~~~~~----------------------------------------~~~~~~~~~~l~~li~~~l~~dP~~R~~~~~~l~ 273 (311)
T 3ork_A 234 EDPIPP----------------------------------------SARHEGLSADLDAVVLKALAKNPENRYQTAAEMR 273 (311)
T ss_dssp CCCCCH----------------------------------------HHHSTTCCHHHHHHHHHHTCSSGGGSCSSHHHHH
T ss_pred CCCCCc----------------------------------------ccccCCCCHHHHHHHHHHHhcCHhhChhhHHHHH
Confidence 000000 00111235678899999999999999965554 4
Q ss_pred HHHHHHH
Q 005045 700 NNLKTIR 706 (717)
Q Consensus 700 ~~l~~i~ 706 (717)
+.+.++.
T Consensus 274 ~~l~~~~ 280 (311)
T 3ork_A 274 ADLVRVH 280 (311)
T ss_dssp HHHHHHH
T ss_pred HHHHHHh
Confidence 5555543
No 126
>1xjd_A Protein kinase C, theta type; PKC-theta, ATP, AMP,, transferase; HET: TPO SEP STU; 2.00A {Homo sapiens} SCOP: d.144.1.7 PDB: 2jed_A*
Probab=100.00 E-value=2.3e-39 Score=339.03 Aligned_cols=249 Identities=23% Similarity=0.374 Sum_probs=197.0
Q ss_pred cccccccccccccCcccccceEEEEeC-CCchhhhHHhHhhh---hhHHHHHHHHHHHHhcC-CCCceeEEEEeeccccC
Q 005045 385 SKSTDNFSKENLIGTGSFGSVYKGTLG-DGTIVAIKVLKLQQ---QGALKSFIDECNALKST-RHRNILRVITACSSVDL 459 (717)
Q Consensus 385 ~~~~~~y~~~~~ig~g~~g~v~~~~~~-~~~~vavK~~~~~~---~~~~~~~~~e~~~l~~l-~h~ni~~~~~~~~~~~~ 459 (717)
....++|++.+.||+|+||.||+|+++ +|+.||+|++.... ......+..|.++++.+ +||||+++++++
T Consensus 13 ~~~~~~y~~~~~lG~G~fg~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~~E~~il~~~~~hp~iv~l~~~~----- 87 (345)
T 1xjd_A 13 KLKIEDFILHKMLGKGSFGKVFLAEFKKTNQFFAIKALKKDVVLMDDDVECTMVEKRVLSLAWEHPFLTHMFCTF----- 87 (345)
T ss_dssp ---CTTEEEEEEEEECSSSEEEEEEETTTTEEEEEEEEEHHHHHHTTCHHHHHHHHHHHHHHTTCTTBCCEEEEE-----
T ss_pred CCChHHeEEEEEEeeCCCeEEEEEEECCCCCEEEEEEEEhHHhhhhhhHHHHHHHHHHHHhcCCCCCCCcEEEEE-----
Confidence 345679999999999999999999975 78999999987542 23456678899999876 999999999995
Q ss_pred CCCceEEEEEecCCCCChhhhccCCCCCcccccccCHHHHHHHHHHHHHHHHHHHhcCCCCeeecCCCCCCEEeCCCCce
Q 005045 460 EGNDFKALVFEFMSNGNLDQWLHPSPAEHYQFKKLSVIQRLNIAIDVASALDYLHHHCDTPIAHCDLKPSNVLLDKDMTA 539 (717)
Q Consensus 460 ~~~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~dlkp~NIll~~~~~~ 539 (717)
.+.+..|+||||++||+|.+++... ..+++..+..++.||+.||+|||+. +|+||||||+||+++.+|.+
T Consensus 88 ~~~~~~~lv~E~~~gg~L~~~l~~~-------~~~~~~~~~~~~~qi~~aL~~LH~~---~ivHrDlkp~NIll~~~g~v 157 (345)
T 1xjd_A 88 QTKENLFFVMEYLNGGDLMYHIQSC-------HKFDLSRATFYAAEIILGLQFLHSK---GIVYRDLKLDNILLDKDGHI 157 (345)
T ss_dssp ECSSEEEEEEECCTTCBHHHHHHHH-------SSCCHHHHHHHHHHHHHHHHHHHHT---TCBCCCCCGGGEEECTTSCE
T ss_pred EeCCEEEEEEeCCCCCcHHHHHHHc-------CCCCHHHHHHHHHHHHHHHHHHHHC---CeEeCCCChhhEEECCCCCE
Confidence 4456899999999999999998743 5689999999999999999999998 99999999999999999999
Q ss_pred EEeeeccchhcccccCCCCCCcceeecccccccccCCCccCC-CCCcccchhhHHHHHHHHHhCCCCCCCCCCCchhhhH
Q 005045 540 HVGDFGLAKFLFEISDNPSKNQTVSIGLKGSIGYIPPEHMNG-QVSILGDIYSYGILLLEMFTGKRPTGDMFKDDFSIHM 618 (717)
Q Consensus 540 kl~Dfg~~~~~~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~-~~~~~sDvwslG~vl~elltg~~p~~~~~~~~~~~~~ 618 (717)
||+|||++..... .........||+.|+|||++.+ .++.++|||||||++|||++|..||...... ....
T Consensus 158 kL~DFG~a~~~~~-------~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~ell~g~~Pf~~~~~~--~~~~ 228 (345)
T 1xjd_A 158 KIADFGMCKENML-------GDAKTNTFCGTPDYIAPEILLGQKYNHSVDWWSFGVLLYEMLIGQSPFHGQDEE--ELFH 228 (345)
T ss_dssp EECCCTTCBCCCC-------TTCCBCCCCSCGGGCCHHHHTTCCBCTHHHHHHHHHHHHHHHHSSCSSCCSSHH--HHHH
T ss_pred EEeEChhhhhccc-------CCCcccCCCCCcccCChhhhcCCCCCChhhhHHHHHHHHHHhcCCCCCCCCCHH--HHHH
Confidence 9999999875311 1112344679999999999765 4899999999999999999999999754221 1111
Q ss_pred HHHhcCChhhhhhcCCCCCCCCCCcHHHHHHHHHHHHHHhhhhhhhcchhhhHHHHHHHHHHhhccCCCCcCCCCCHH-H
Q 005045 619 FVSMALPDHVMDILDPSMPLDEENDEEQIEEVIEEKEMMIHIDLEVNTKNKLEECFVSVLRIGLMCSTTSPRERIAMN-V 697 (717)
Q Consensus 619 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~cl~~~p~~Rps~~-e 697 (717)
..... .+..+ ...+..+.+++.+||+.+|++||++. |
T Consensus 229 ~i~~~---------~~~~p---------------------------------~~~s~~~~~li~~lL~~dp~~R~~~~~~ 266 (345)
T 1xjd_A 229 SIRMD---------NPFYP---------------------------------RWLEKEAKDLLVKLFVREPEKRLGVRGD 266 (345)
T ss_dssp HHHHC---------CCCCC---------------------------------TTSCHHHHHHHHHHSCSSGGGSBTTBSC
T ss_pred HHHhC---------CCCCC---------------------------------cccCHHHHHHHHHHhcCCHhHcCCChHH
Confidence 11000 00111 01145678899999999999999997 6
Q ss_pred HH
Q 005045 698 VV 699 (717)
Q Consensus 698 il 699 (717)
|+
T Consensus 267 i~ 268 (345)
T 1xjd_A 267 IR 268 (345)
T ss_dssp GG
T ss_pred HH
Confidence 64
No 127
>3p1a_A MYT1 kinase, membrane-associated tyrosine- and threonine-speci inhibitory kinase; structural genomics, structural genomics consortium, SGC; 1.70A {Homo sapiens}
Probab=100.00 E-value=7.9e-39 Score=331.69 Aligned_cols=245 Identities=21% Similarity=0.270 Sum_probs=189.9
Q ss_pred ccccccccccCcccccceEEEEeC-CCchhhhHHhHhhh--hhHHHHHHHHHHHHhcC-CCCceeEEEEeeccccCCCCc
Q 005045 388 TDNFSKENLIGTGSFGSVYKGTLG-DGTIVAIKVLKLQQ--QGALKSFIDECNALKST-RHRNILRVITACSSVDLEGND 463 (717)
Q Consensus 388 ~~~y~~~~~ig~g~~g~v~~~~~~-~~~~vavK~~~~~~--~~~~~~~~~e~~~l~~l-~h~ni~~~~~~~~~~~~~~~~ 463 (717)
.++|++.++||+|+||.||+|++. +++.||||++.... .........|+..+.++ .||||+++++++. +.+
T Consensus 56 ~~~y~~~~~LG~G~~g~Vy~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~e~~~~~~~~~h~~iv~l~~~~~-----~~~ 130 (311)
T 3p1a_A 56 QQSFQRLSRLGHGSYGEVFKVRSKEDGRLYAVKRSMSPFRGPKDRARKLAEVGSHEKVGQHPCCVRLEQAWE-----EGG 130 (311)
T ss_dssp HHHEEEEEEEEEETTEEEEEEEETTTSCEEEEEEESSSCCSHHHHHHHHHHHHHHHHHCCCTTBCCEEEEEE-----ETT
T ss_pred hhheeeeheeccCCCeEEEEEEECCCCeEEEEEEecccccChHHHHHHHHHHHHHHHhcCCCcEEEEEEEEE-----eCC
Confidence 478999999999999999999976 89999999875431 22334444555555554 9999999999964 456
Q ss_pred eEEEEEecCCCCChhhhccCCCCCcccccccCHHHHHHHHHHHHHHHHHHHhcCCCCeeecCCCCCCEEeCCCCceEEee
Q 005045 464 FKALVFEFMSNGNLDQWLHPSPAEHYQFKKLSVIQRLNIAIDVASALDYLHHHCDTPIAHCDLKPSNVLLDKDMTAHVGD 543 (717)
Q Consensus 464 ~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~dlkp~NIll~~~~~~kl~D 543 (717)
..++||||+ +++|.+++.... ..+++..+..++.||+.||+|||+. +|+||||||+||+++.++.+||+|
T Consensus 131 ~~~lv~e~~-~~~L~~~~~~~~------~~l~~~~~~~i~~qi~~aL~~LH~~---~ivH~Dikp~NIll~~~~~~kl~D 200 (311)
T 3p1a_A 131 ILYLQTELC-GPSLQQHCEAWG------ASLPEAQVWGYLRDTLLALAHLHSQ---GLVHLDVKPANIFLGPRGRCKLGD 200 (311)
T ss_dssp EEEEEEECC-CCBHHHHHHHHC------SCCCHHHHHHHHHHHHHHHHHHHHT---TEECCCCSGGGEEECGGGCEEECC
T ss_pred EEEEEEecc-CCCHHHHHHhcC------CCCCHHHHHHHHHHHHHHHHHHHHC---CEecCCCCHHHEEECCCCCEEEcc
Confidence 899999999 679998886432 4689999999999999999999998 999999999999999999999999
Q ss_pred eccchhcccccCCCCCCcceeecccccccccCCCccCCCCCcccchhhHHHHHHHHHhCCCCCCCCCCCchhhhHHHHhc
Q 005045 544 FGLAKFLFEISDNPSKNQTVSIGLKGSIGYIPPEHMNGQVSILGDIYSYGILLLEMFTGKRPTGDMFKDDFSIHMFVSMA 623 (717)
Q Consensus 544 fg~~~~~~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~sDvwslG~vl~elltg~~p~~~~~~~~~~~~~~~~~~ 623 (717)
||.+..... ........||+.|+|||++.+.++.++|||||||++|||++|..|+... ....
T Consensus 201 FG~a~~~~~--------~~~~~~~~gt~~y~aPE~~~~~~~~~~DiwslG~il~el~~g~~~~~~~----~~~~------ 262 (311)
T 3p1a_A 201 FGLLVELGT--------AGAGEVQEGDPRYMAPELLQGSYGTAADVFSLGLTILEVACNMELPHGG----EGWQ------ 262 (311)
T ss_dssp CTTCEECC--------------CCCCCGGGCCGGGGGTCCSTHHHHHHHHHHHHHHHHTCCCCSSH----HHHH------
T ss_pred ceeeeeccc--------CCCCcccCCCccccCHhHhcCCCCchhhHHHHHHHHHHHHhCCCCCCCc----cHHH------
Confidence 999876521 1122334589999999999889999999999999999999997776431 0000
Q ss_pred CChhhhhhcCCCCCCCCCCcHHHHHHHHHHHHHHhhhhhhhcchhhhHHHHHHHHHHhhccCCCCcCCCCCHHHHHH
Q 005045 624 LPDHVMDILDPSMPLDEENDEEQIEEVIEEKEMMIHIDLEVNTKNKLEECFVSVLRIGLMCSTTSPRERIAMNVVVN 700 (717)
Q Consensus 624 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~cl~~~p~~Rps~~eil~ 700 (717)
.+.....+ ......++..+.+++.+||+++|++|||++|+++
T Consensus 263 ------~~~~~~~~-----------------------------~~~~~~~~~~l~~li~~~L~~dP~~Rpt~~ell~ 304 (311)
T 3p1a_A 263 ------QLRQGYLP-----------------------------PEFTAGLSSELRSVLVMMLEPDPKLRATAEALLA 304 (311)
T ss_dssp ------HHTTTCCC-----------------------------HHHHTTSCHHHHHHHHHHSCSSTTTSCCHHHHHT
T ss_pred ------HHhccCCC-----------------------------cccccCCCHHHHHHHHHHcCCChhhCcCHHHHHh
Confidence 01000000 0011223567889999999999999999999986
No 128
>3c1x_A Hepatocyte growth factor receptor; receptor tyrosine kinase, signal transduction, GRB2, SHC, ATP-binding, glycoprotein, membrane; HET: CKK; 2.17A {Homo sapiens} SCOP: d.144.1.7
Probab=100.00 E-value=2.8e-39 Score=342.73 Aligned_cols=269 Identities=25% Similarity=0.447 Sum_probs=200.0
Q ss_pred ccccccccccccCcccccceEEEEeC--CC--chhhhHHhHhh-hhhHHHHHHHHHHHHhcCCCCceeEEEEeeccccCC
Q 005045 386 KSTDNFSKENLIGTGSFGSVYKGTLG--DG--TIVAIKVLKLQ-QQGALKSFIDECNALKSTRHRNILRVITACSSVDLE 460 (717)
Q Consensus 386 ~~~~~y~~~~~ig~g~~g~v~~~~~~--~~--~~vavK~~~~~-~~~~~~~~~~e~~~l~~l~h~ni~~~~~~~~~~~~~ 460 (717)
.....|++.+.||+|+||.||+|.+. ++ ..||+|.+... .....+.+.+|+.++++++||||+++++++. .
T Consensus 86 ~~~~~~~~~~~LG~G~fg~Vy~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~il~~l~hpnIv~~~~~~~----~ 161 (373)
T 3c1x_A 86 PSSLIVHFNEVIGRGHFGCVYHGTLLDNDGKKIHCAVKSLNRITDIGEVSQFLTEGIIMKDFSHPNVLSLLGICL----R 161 (373)
T ss_dssp STTEEEEEEEEEECCSSSEEEEEEEEETTTEEEEEEEEECCSCSCSHHHHHHHHHHTTSTTCCCTTBCCCCEEEC----C
T ss_pred hhhceeecCcEeeeCCCeEEEEEEEECCCCcEEEEEEEEcCCCCCHHHHHHHHHHHHHHHhCCCCCcceEEEEEE----c
Confidence 34457889999999999999999853 22 35889987643 3345678999999999999999999999863 3
Q ss_pred CCceEEEEEecCCCCChhhhccCCCCCcccccccCHHHHHHHHHHHHHHHHHHHhcCCCCeeecCCCCCCEEeCCCCceE
Q 005045 461 GNDFKALVFEFMSNGNLDQWLHPSPAEHYQFKKLSVIQRLNIAIDVASALDYLHHHCDTPIAHCDLKPSNVLLDKDMTAH 540 (717)
Q Consensus 461 ~~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~dlkp~NIll~~~~~~k 540 (717)
..+..++||||+++++|.+++.... ..+++..+..++.||+.||+|||+. +|+||||||+||+++.++.+|
T Consensus 162 ~~~~~~lv~e~~~~g~L~~~l~~~~------~~~~~~~~~~i~~qi~~aL~~LH~~---~ivHrDlkp~NIll~~~~~~k 232 (373)
T 3c1x_A 162 SEGSPLVVLPYMKHGDLRNFIRNET------HNPTVKDLIGFGLQVAKGMKFLASK---KFVHRDLAARNCMLDEKFTVK 232 (373)
T ss_dssp CSSCCEEEEECCTTCBHHHHHHCTT------CCCBHHHHHHHHHHHHHHHHHHHHT---TCCCSCCCGGGEEECTTCCEE
T ss_pred CCCCeEEEEECCCCCCHHHHHhhcc------cCCCHHHHHHHHHHHHHHHHHHHHC---CEecCccchheEEECCCCCEE
Confidence 4457899999999999999997543 4578999999999999999999998 999999999999999999999
Q ss_pred EeeeccchhcccccCCCCCCcceeecccccccccCCCccC-CCCCcccchhhHHHHHHHHHh-CCCCCCCCCCCchhhhH
Q 005045 541 VGDFGLAKFLFEISDNPSKNQTVSIGLKGSIGYIPPEHMN-GQVSILGDIYSYGILLLEMFT-GKRPTGDMFKDDFSIHM 618 (717)
Q Consensus 541 l~Dfg~~~~~~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~-~~~~~~sDvwslG~vl~ellt-g~~p~~~~~~~~~~~~~ 618 (717)
|+|||+++....... ..........+++.|+|||++. +.++.++|||||||++|||++ |..||......+...
T Consensus 233 L~DFG~a~~~~~~~~---~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~DvwSlG~il~ellt~~~~p~~~~~~~~~~~-- 307 (373)
T 3c1x_A 233 VADFGLARDMYDKEF---DSVHNKTGAKLPVKWMALESLQTQKFTTKSDVWSFGVLLWELMTRGAPPYPDVNTFDITV-- 307 (373)
T ss_dssp ECCC------------------------CCGGGSCHHHHHHCCCCHHHHHHHHHHHHHHHHTTSCCSCTTSCSSCHHH--
T ss_pred Eeecccccccccccc---ccccccCCCCCcccccChHHhcCCCCCcHHHHHHHHHHHHHHHhCcCCCCCCCCHHHHHH--
Confidence 999999986522111 1111223345778899999964 458999999999999999999 777876553332211
Q ss_pred HHHhcCChhhhhhcCCCCCCCCCCcHHHHHHHHHHHHHHhhhhhhhcchhhhHHHHHHHHHHhhccCCCCcCCCCCHHHH
Q 005045 619 FVSMALPDHVMDILDPSMPLDEENDEEQIEEVIEEKEMMIHIDLEVNTKNKLEECFVSVLRIGLMCSTTSPRERIAMNVV 698 (717)
Q Consensus 619 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~cl~~~p~~Rps~~ei 698 (717)
..... .... .+..++..+.+++.+||+.+|++|||++|+
T Consensus 308 ~~~~~-----------~~~~------------------------------~p~~~~~~l~~li~~cl~~dp~~RPs~~el 346 (373)
T 3c1x_A 308 YLLQG-----------RRLL------------------------------QPEYCPDPLYEVMLKCWHPKAEMRPSFSEL 346 (373)
T ss_dssp HHHTT-----------CCCC------------------------------CCTTCCHHHHHHHHHHTCSSGGGSCCHHHH
T ss_pred HHHcC-----------CCCC------------------------------CCCCCCHHHHHHHHHHcCCChhhCcCHHHH
Confidence 11100 0000 111235668899999999999999999999
Q ss_pred HHHHHHHHHHHHhhh
Q 005045 699 VNNLKTIRNCFLEFK 713 (717)
Q Consensus 699 l~~l~~i~~~~~~~~ 713 (717)
++.|+++...+....
T Consensus 347 l~~L~~i~~~~~~~~ 361 (373)
T 3c1x_A 347 VSRISAIFSTFIGEH 361 (373)
T ss_dssp HHHHHHHHHTCCSCC
T ss_pred HHHHHHHHHhccccc
Confidence 999999998766544
No 129
>1qpc_A LCK kinase; alpha beta fold, transferase; HET: PTR ANP; 1.60A {Homo sapiens} SCOP: d.144.1.7 PDB: 1qpe_A* 1qpj_A* 2pl0_A* 3kxz_A* 3ac1_A* 2zm4_A* 2zyb_A* 2zm1_A* 3ac2_A* 3ac3_A* 3ac4_A* 3ac5_A* 3ac8_A* 3acj_A* 3ack_A* 3ad4_A* 3ad5_A* 3ad6_A* 3kmm_A* 1qpd_A* ...
Probab=100.00 E-value=4e-39 Score=328.81 Aligned_cols=265 Identities=24% Similarity=0.448 Sum_probs=210.1
Q ss_pred ccccccccccccccccCcccccceEEEEeCCCchhhhHHhHhhhhhHHHHHHHHHHHHhcCCCCceeEEEEeeccccCCC
Q 005045 382 SDISKSTDNFSKENLIGTGSFGSVYKGTLGDGTIVAIKVLKLQQQGALKSFIDECNALKSTRHRNILRVITACSSVDLEG 461 (717)
Q Consensus 382 ~~~~~~~~~y~~~~~ig~g~~g~v~~~~~~~~~~vavK~~~~~~~~~~~~~~~e~~~l~~l~h~ni~~~~~~~~~~~~~~ 461 (717)
+++....++|++.+.||+|++|.||.|...+++.||+|.+..... ..+.+.+|++++++++||||+++++++.
T Consensus 6 ~~~~v~~~~y~~~~~lg~G~~g~Vy~~~~~~~~~vavK~~~~~~~-~~~~~~~E~~~l~~l~h~~i~~~~~~~~------ 78 (279)
T 1qpc_A 6 DEWEVPRETLKLVERLGAGQFGEVWMGYYNGHTKVAVKSLKQGSM-SPDAFLAEANLMKQLQHQRLVRLYAVVT------ 78 (279)
T ss_dssp CTTBCCGGGEEEEEEEEEETTEEEEEEEETTTEEEEEEEECTTSS-CHHHHHHHHHHHHHCCCTTBCCEEEEEC------
T ss_pred hhcccCHHhhhheeeecCCCCeEEEEEEEcCCcEEEEEEecCCcc-cHHHHHHHHHHHHhCCCcCcceEEEEEc------
Confidence 456677889999999999999999999988888899999875432 3467889999999999999999999853
Q ss_pred CceEEEEEecCCCCChhhhccCCCCCcccccccCHHHHHHHHHHHHHHHHHHHhcCCCCeeecCCCCCCEEeCCCCceEE
Q 005045 462 NDFKALVFEFMSNGNLDQWLHPSPAEHYQFKKLSVIQRLNIAIDVASALDYLHHHCDTPIAHCDLKPSNVLLDKDMTAHV 541 (717)
Q Consensus 462 ~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~dlkp~NIll~~~~~~kl 541 (717)
.+..++||||+++++|.+++.... ...+++..+..++.|++.||+|||+. +++||||||+||+++.++.+||
T Consensus 79 ~~~~~~v~e~~~~~~L~~~l~~~~-----~~~~~~~~~~~i~~qi~~~l~~lH~~---~i~H~dikp~Nil~~~~~~~kl 150 (279)
T 1qpc_A 79 QEPIYIITEYMENGSLVDFLKTPS-----GIKLTINKLLDMAAQIAEGMAFIEER---NYIHRDLRAANILVSDTLSCKI 150 (279)
T ss_dssp SSSCEEEEECCTTCBHHHHTTSHH-----HHTCCHHHHHHHHHHHHHHHHHHHHT---TEECSCCSGGGEEECTTSCEEE
T ss_pred CCCcEEEEecCCCCCHHHHHhcCC-----CCCCCHHHHHHHHHHHHHHHHHHHHC---CeeccCCCHhhEEEcCCCCEEE
Confidence 235799999999999999997531 13689999999999999999999998 9999999999999999999999
Q ss_pred eeeccchhcccccCCCCCCcceeecccccccccCCCccC-CCCCcccchhhHHHHHHHHHh-CCCCCCCCCCCchhhhHH
Q 005045 542 GDFGLAKFLFEISDNPSKNQTVSIGLKGSIGYIPPEHMN-GQVSILGDIYSYGILLLEMFT-GKRPTGDMFKDDFSIHMF 619 (717)
Q Consensus 542 ~Dfg~~~~~~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~-~~~~~~sDvwslG~vl~ellt-g~~p~~~~~~~~~~~~~~ 619 (717)
+|||.+...... .........++..|+|||++. +.++.++|||||||++|+|++ |..||....... ....
T Consensus 151 ~Dfg~~~~~~~~------~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~el~~~g~~p~~~~~~~~--~~~~ 222 (279)
T 1qpc_A 151 ADFGLARLIEDN------EYTAREGAKFPIKWTAPEAINYGTFTIKSDVWSFGILLTEIVTHGRIPYPGMTNPE--VIQN 222 (279)
T ss_dssp CCCTTCEECSSS------CEECCTTCCCCTTTSCHHHHHHCEECHHHHHHHHHHHHHHHHTTTCCSSTTCCHHH--HHHH
T ss_pred CCCcccccccCc------ccccccCCCCccCccChhhhccCCCCchhhhHHHHHHHHHHHhCCCCCCcccCHHH--HHHH
Confidence 999999865211 111122344677899999965 458999999999999999999 999997542211 1111
Q ss_pred HHhcCChhhhhhcCCCCCCCCCCcHHHHHHHHHHHHHHhhhhhhhcchhhhHHHHHHHHHHhhccCCCCcCCCCCHHHHH
Q 005045 620 VSMALPDHVMDILDPSMPLDEENDEEQIEEVIEEKEMMIHIDLEVNTKNKLEECFVSVLRIGLMCSTTSPRERIAMNVVV 699 (717)
Q Consensus 620 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~cl~~~p~~Rps~~eil 699 (717)
.... .... .+..++..+.+++.+|++.+|++|||+.+++
T Consensus 223 ~~~~--------~~~~---------------------------------~~~~~~~~l~~li~~~l~~~p~~Rps~~~l~ 261 (279)
T 1qpc_A 223 LERG--------YRMV---------------------------------RPDNCPEELYQLMRLCWKERPEDRPTFDYLR 261 (279)
T ss_dssp HHTT--------CCCC---------------------------------CCTTCCHHHHHHHHHHTCSSGGGSCCHHHHH
T ss_pred Hhcc--------cCCC---------------------------------CcccccHHHHHHHHHHhccChhhCCCHHHHH
Confidence 1100 0000 0112256788999999999999999999999
Q ss_pred HHHHHHHHHHH
Q 005045 700 NNLKTIRNCFL 710 (717)
Q Consensus 700 ~~l~~i~~~~~ 710 (717)
+.|+.+.....
T Consensus 262 ~~l~~~~~~~~ 272 (279)
T 1qpc_A 262 SVLEDFFTATE 272 (279)
T ss_dssp HHHHHHHHHC-
T ss_pred HHHHHHHHhcc
Confidence 99999886543
No 130
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=100.00 E-value=3.4e-37 Score=352.63 Aligned_cols=377 Identities=19% Similarity=0.177 Sum_probs=276.8
Q ss_pred cEEEcCCCcCcCCCCcCCcCCCCCCEEECCCCcccccCCcCCCCCCCCCEEEccCccccccCCccccCCCCCCEEeccCC
Q 005045 13 QDLNLTYNYLSGKIPTNLSHCTELRSFEASVNDFVGQIPNQLSSLTKLEIIGLGGSNLTGNVPAWIGNFSSLKALSLAWN 92 (717)
Q Consensus 13 ~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n 92 (717)
.+.+-++-+++ .+|..+- +++++|+|++|.|+++.|.+|.++++|++|+|++|+|++..|.+|.++++|++|+|++|
T Consensus 34 ~~~~c~~~~l~-~vP~~lp--~~~~~LdLs~N~i~~l~~~~f~~l~~L~~L~Ls~N~i~~i~~~~f~~L~~L~~L~Ls~N 110 (635)
T 4g8a_A 34 ITYQCMELNFY-KIPDNLP--FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGN 110 (635)
T ss_dssp TEEECTTSCCS-SCCSSSC--TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTC
T ss_pred CEEECCCCCcC-ccCCCCC--cCCCEEEeeCCCCCCCCHHHHhCCCCCCEEECCCCcCCCcChhHhcCCCCCCEEEccCC
Confidence 46778888898 6887664 48999999999999877889999999999999999999878889999999999999999
Q ss_pred cCcccCChhhhccCCCCeEeccCCCCCCCCCccccCCCCccEEEcccCcccccCCcccccCCCCcceeecccccccccCC
Q 005045 93 NLRGSIPNELGQLSGLGFFTLYGNFISGIIPSSIYNISSIYYFSVTQNQLHGQLPTDVGLTLPNLKIFAGAVNYFTGSIP 172 (717)
Q Consensus 93 ~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~~l~~~~~~~l~~L~~L~l~~n~l~~~~~ 172 (717)
+|++..+.+|.++++|++|+|++|+++++.+..|+++++|++|+|++|.+++.-....+..+++|+.|++++|.+++..+
T Consensus 111 ~l~~l~~~~f~~L~~L~~L~Ls~N~l~~l~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~ 190 (635)
T 4g8a_A 111 PIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYC 190 (635)
T ss_dssp CCCEECGGGGTTCTTCCEEECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECG
T ss_pred cCCCCCHHHhcCCCCCCEEECCCCcCCCCChhhhhcCcccCeeccccCccccCCCchhhccchhhhhhcccCcccccccc
Confidence 99987888999999999999999999988888999999999999999999843234455689999999999999987666
Q ss_pred ccCCCCCCC----CEEeccCccccccCCCC--------------------------------------------------
Q 005045 173 VSLSNASNL----QVLDFAENGLTGTIPGN-------------------------------------------------- 198 (717)
Q Consensus 173 ~~~~~l~~L----~~L~l~~N~l~~~~~~~-------------------------------------------------- 198 (717)
..|..+.++ ..++++.|.++...+..
T Consensus 191 ~~l~~L~~l~~~~~~~~ls~n~l~~i~~~~~~~~~~~~l~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~~l~~~ 270 (635)
T 4g8a_A 191 TDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKF 270 (635)
T ss_dssp GGGHHHHTCTTCCCEEECTTCCCCEECTTTTTTCEEEEEEEESCCSSHHHHHHHHHTTTTCEEEEEEEECCTTSCCCSCC
T ss_pred ccccchhhhhhhhhhhhcccCcccccCcccccchhhhhhhhhcccccccccchhhcCCcccccccccccccccccccccc
Confidence 555433222 13333333332111100
Q ss_pred -----------------------------------------------------ccCCCCCCeeeccccccCCcccCchhh
Q 005045 199 -----------------------------------------------------FGSLKDLVRLNFDQNELGSREIGDLNF 225 (717)
Q Consensus 199 -----------------------------------------------------~~~l~~L~~L~l~~N~l~~~~~~~~~~ 225 (717)
+.....|+.|++.+|.+..+....+..
T Consensus 271 ~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~ 350 (635)
T 4g8a_A 271 DKSALEGLCNLTIEEFRLAYLDYYLDGIIDLFNCLTNVSSFSLVSVTIERVKDFSYNFGWQHLELVNCKFGQFPTLKLKS 350 (635)
T ss_dssp CTTTTGGGGGSEEEEEEEECCCSCEEECTTTTGGGTTCSEEEEESCEEEECGGGGSCCCCSEEEEESCEESSCCCCBCTT
T ss_pred cccccccccchhhhhhhhhhhcccccchhhhhhhhcccccccccccccccccccccchhhhhhhcccccccCcCcccchh
Confidence 111122333333333332221110000
Q ss_pred -------------hhhhccCCCCCEEEeecCc------------------------------------------------
Q 005045 226 -------------LKFLANCTSLEVLGLARNS------------------------------------------------ 244 (717)
Q Consensus 226 -------------~~~~~~l~~L~~L~L~~N~------------------------------------------------ 244 (717)
+.....+++|+.|++++|.
T Consensus 351 L~~l~l~~n~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~~~~~~~~~~~~~~~~l~~L~~l~l~~~ 430 (635)
T 4g8a_A 351 LKRLTFTSNKGGNAFSEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTISLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHS 430 (635)
T ss_dssp CCEEEEESCCSCCBCCCCBCTTCCEEECCSSCCBEEEECCHHHHSCSCCCEEECCSCSEEEECSCCTTCTTCCEEECTTS
T ss_pred hhhcccccccCCCCcccccccccccchhhccccccccccccchhhhhhhhhhhccccccccccccccccccccchhhhhc
Confidence 0001123344444444443
Q ss_pred -ccCcCchhhhhccccccEEecCCCccCCCCCccccCCCCCCEEEccCCcC-ccccchhhhcCCCCCeEEcccCcCCCCC
Q 005045 245 -FGGEMPISIANLSTHLRRLTMGENLMHGNIPVGIGNLVNLNLLGLEGNNL-SGSVPEVIGRLNKLEGLGLNVNKFSGLI 322 (717)
Q Consensus 245 -l~~~~p~~~~~~~~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~L~~N~l-~~~~~~~~~~l~~L~~L~Ls~N~l~~~~ 322 (717)
.....+...+...++++.+++++|.+.+..+..+..++.|+.|+|++|++ ....|..|..+++|++|+|++|+++++.
T Consensus 431 ~~~~~~~~~~~~~l~~l~~l~ls~n~l~~~~~~~~~~~~~L~~L~Ls~N~~~~~~~~~~~~~l~~L~~L~Ls~N~L~~l~ 510 (635)
T 4g8a_A 431 NLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLS 510 (635)
T ss_dssp EEESTTSSCTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEEC
T ss_pred cccccccccccccccccccccccccccccccccccccchhhhhhhhhhcccccccCchhhhhccccCEEECCCCccCCcC
Confidence 33233322222235788888889988888888899999999999999975 4457788999999999999999999999
Q ss_pred CcccccccccceeecccccccccCCcCccCcCCCceEEeecccCCCCCCcccccCCCCcccccccccccc
Q 005045 323 PSSLGNLTILTRLWMEENRLEGSIPPSLGNCQKLLVLNLSSNDLNGTIPKEVRQSGMSYSDISKSTDNFS 392 (717)
Q Consensus 323 ~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~~~~s~~~~~~~~~~y~ 392 (717)
|..|.++++|++|+|++|+|++..|..|..+++|+.|+|++|.|++..|..+....-++..+.-..+.|.
T Consensus 511 ~~~f~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~~L~~L~L~~Np~~ 580 (635)
T 4g8a_A 511 PTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFA 580 (635)
T ss_dssp TTTTTTCTTCCEEECTTSCCCBCCCGGGTTCTTCCEEECTTSCCCBCCSSCTTCCCTTCCEEECTTCCBC
T ss_pred hHHHcCCCCCCEEECCCCcCCCCChhHHhCCCCCCEEECCCCcCCCCCHHHHHhhhCcCCEEEeeCCCCc
Confidence 9999999999999999999998888889999999999999999998777766443333444444444443
No 131
>2xir_A Vascular endothelial growth factor receptor 2; angiogenesis, nucleotide-binding, inhibitor, phosphorylation receptor, transferase, transmembrane; HET: 00J; 1.50A {Homo sapiens} PDB: 1vr2_A* 1ywn_A* 3vnt_A* 3c7q_A* 2oh4_A* 3u6j_A* 3efl_A* 2p2i_A* 3cjf_A* 3cjg_A* 3ewh_A* 2qu5_A* 2qu6_A* 2rl5_A* 3b8q_A* 3b8r_A* 2p2h_A* 3cp9_A* 3cpb_A* 3cpc_A* ...
Probab=100.00 E-value=1.2e-38 Score=331.63 Aligned_cols=279 Identities=21% Similarity=0.332 Sum_probs=215.5
Q ss_pred CCCcccccccccccccccccCcccccceEEEEe------CCCchhhhHHhHhhh-hhHHHHHHHHHHHHhcC-CCCceeE
Q 005045 378 GMSYSDISKSTDNFSKENLIGTGSFGSVYKGTL------GDGTIVAIKVLKLQQ-QGALKSFIDECNALKST-RHRNILR 449 (717)
Q Consensus 378 ~~s~~~~~~~~~~y~~~~~ig~g~~g~v~~~~~------~~~~~vavK~~~~~~-~~~~~~~~~e~~~l~~l-~h~ni~~ 449 (717)
.+....+....++|++.+.||+|+||.||+|.+ .+++.||+|++.... ....+.+.+|+++++++ +||||++
T Consensus 16 ~~~~~~~~~~~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~~hp~iv~ 95 (316)
T 2xir_A 16 PYDASKWEFPRDRLKLGKPLGRGAFGQVIEADAFGIDKTATCRTVAVKMLKEGATHSEHRALMSELKILIHIGHHLNVVN 95 (316)
T ss_dssp CCCHHHHBCCGGGEEEEEEEEECSSEEEEEEEEESSSSTTCEEEEEEEEECTTCCHHHHHHHHHHHHHHHHHCCCTTBCC
T ss_pred cccccceecchhheeeeeEEcCCCceeEEEEEEecCCccccceEEEEEecccCCCcHHHHHHHHHHHHHHhcccCCCeee
Confidence 455556667789999999999999999999983 256889999987543 33456788999999999 7999999
Q ss_pred EEEeeccccCCCCceEEEEEecCCCCChhhhccCCCCCcc---------cccccCHHHHHHHHHHHHHHHHHHHhcCCCC
Q 005045 450 VITACSSVDLEGNDFKALVFEFMSNGNLDQWLHPSPAEHY---------QFKKLSVIQRLNIAIDVASALDYLHHHCDTP 520 (717)
Q Consensus 450 ~~~~~~~~~~~~~~~~~lv~e~~~~~~L~~~l~~~~~~~~---------~~~~~~~~~~~~i~~~i~~~l~~LH~~~~~~ 520 (717)
+++++.. .+...++||||+++++|.+++........ ....+++..+..++.||+.||+|||+. +
T Consensus 96 ~~~~~~~----~~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~qi~~al~~lH~~---~ 168 (316)
T 2xir_A 96 LLGACTK----PGGPLMVIVEFCKFGNLSTYLRSKRNEFVPYKVAPEDLYKDFLTLEHLICYSFQVAKGMEFLASR---K 168 (316)
T ss_dssp EEEEECC----TTSCCEEEEECCTTEEHHHHHHTCTTSEECC-------CTTCEEHHHHHHHHHHHHHHHHHHHHT---T
T ss_pred EEEEEec----CCCceEEEEEcCCCCcHHHHHHhcccccccccccchhhhccccCHHHHHHHHHHHHHHHHHHHhC---C
Confidence 9999632 34568999999999999999976532110 012388999999999999999999998 9
Q ss_pred eeecCCCCCCEEeCCCCceEEeeeccchhcccccCCCCCCcceeecccccccccCCCccC-CCCCcccchhhHHHHHHHH
Q 005045 521 IAHCDLKPSNVLLDKDMTAHVGDFGLAKFLFEISDNPSKNQTVSIGLKGSIGYIPPEHMN-GQVSILGDIYSYGILLLEM 599 (717)
Q Consensus 521 ivH~dlkp~NIll~~~~~~kl~Dfg~~~~~~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~-~~~~~~sDvwslG~vl~el 599 (717)
|+||||||+||+++.++.+||+|||.+..... ...........+++.|+|||++. +.++.++|||||||++|+|
T Consensus 169 i~H~dikp~Nil~~~~~~~kl~Dfg~~~~~~~-----~~~~~~~~~~~~t~~y~aPE~~~~~~~~~~~Di~slG~il~~l 243 (316)
T 2xir_A 169 CIHRDLAARNILLSEKNVVKICDFGLARDIYK-----DPDYVRKGDARLPLKWMAPETIFDRVYTIQSDVWSFGVLLWEI 243 (316)
T ss_dssp CCCSCCSGGGEEECGGGCEEECCCGGGSCTTT-----CTTSEEETTEEECGGGCCHHHHHHCCCCHHHHHHHHHHHHHHH
T ss_pred cccccCccceEEECCCCCEEECCCcccccccc-----CccceeccCCCcceeecCchhhccccccchhHHHHHHHHHHHH
Confidence 99999999999999999999999999986521 11222333456788999999964 4589999999999999999
Q ss_pred Hh-CCCCCCCCCCCchhhhHHHHhcCChhhhhhcCCCCCCCCCCcHHHHHHHHHHHHHHhhhhhhhcchhhhHHHHHHHH
Q 005045 600 FT-GKRPTGDMFKDDFSIHMFVSMALPDHVMDILDPSMPLDEENDEEQIEEVIEEKEMMIHIDLEVNTKNKLEECFVSVL 678 (717)
Q Consensus 600 lt-g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 678 (717)
++ |..||.......... ....... .... +..++..+.
T Consensus 244 ~t~g~~p~~~~~~~~~~~-~~~~~~~--------~~~~---------------------------------~~~~~~~l~ 281 (316)
T 2xir_A 244 FSLGASPYPGVKIDEEFC-RRLKEGT--------RMRA---------------------------------PDYTTPEMY 281 (316)
T ss_dssp HTTSCCSSTTCCCSHHHH-HHHHHTC--------CCCC---------------------------------CTTCCHHHH
T ss_pred HhCCCCCCcccchhHHHH-HHhccCc--------cCCC---------------------------------CCCCCHHHH
Confidence 98 999997653322111 1111100 0000 011245678
Q ss_pred HHhhccCCCCcCCCCCHHHHHHHHHHHHHHHH
Q 005045 679 RIGLMCSTTSPRERIAMNVVVNNLKTIRNCFL 710 (717)
Q Consensus 679 ~li~~cl~~~p~~Rps~~eil~~l~~i~~~~~ 710 (717)
+++.+||+.+|++|||+.||++.|+.+.++..
T Consensus 282 ~li~~~l~~dp~~Rps~~ell~~L~~~~~~~~ 313 (316)
T 2xir_A 282 QTMLDCWHGEPSQRPTFSELVEHLGNLLQANA 313 (316)
T ss_dssp HHHHHHTCSSGGGSCCHHHHHHHHHHHHHHHC
T ss_pred HHHHHHcCCChhhCcCHHHHHHHHHHHHhhhc
Confidence 99999999999999999999999999987653
No 132
>1luf_A Muscle-specific tyrosine kinase receptor MUSK; phosphorylation, signal transduction, MASS spectrometry, transferase; 2.05A {Rattus norvegicus} SCOP: d.144.1.7
Probab=100.00 E-value=2.3e-39 Score=341.11 Aligned_cols=272 Identities=24% Similarity=0.424 Sum_probs=209.3
Q ss_pred cccccccccccccccCcccccceEEEEeC------CCchhhhHHhHhhh-hhHHHHHHHHHHHHhcCCCCceeEEEEeec
Q 005045 383 DISKSTDNFSKENLIGTGSFGSVYKGTLG------DGTIVAIKVLKLQQ-QGALKSFIDECNALKSTRHRNILRVITACS 455 (717)
Q Consensus 383 ~~~~~~~~y~~~~~ig~g~~g~v~~~~~~------~~~~vavK~~~~~~-~~~~~~~~~e~~~l~~l~h~ni~~~~~~~~ 455 (717)
.+....++|++.+.||+|+||.||+|++. +++.||+|++.... ....+.+.+|++++++++||||+++++++.
T Consensus 41 ~~~~~~~~~~~~~~lg~G~~g~Vy~~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~hp~iv~~~~~~~ 120 (343)
T 1luf_A 41 SLEYPRNNIEYVRDIGEGAFGRVFQARAPGLLPYEPFTMVAVKMLKEEASADMQADFQREAALMAEFDNPNIVKLLGVCA 120 (343)
T ss_dssp HTBCCGGGCEEEEEEEECSSCEEEEEEEETSSTTSSEEEEEEEECCTTCCHHHHHHHHHHHHHHHTCCCTTBCCEEEEEC
T ss_pred eeEecHHHCeeeeeeeecCCeeEEEEEecCcCCCCCceeEEEEEeccccCHHHHHHHHHHHHHHHhCCCCCEEEEEEEEc
Confidence 34566789999999999999999999964 34789999987543 344678899999999999999999999953
Q ss_pred cccCCCCceEEEEEecCCCCChhhhccCCCCCc-----------------ccccccCHHHHHHHHHHHHHHHHHHHhcCC
Q 005045 456 SVDLEGNDFKALVFEFMSNGNLDQWLHPSPAEH-----------------YQFKKLSVIQRLNIAIDVASALDYLHHHCD 518 (717)
Q Consensus 456 ~~~~~~~~~~~lv~e~~~~~~L~~~l~~~~~~~-----------------~~~~~~~~~~~~~i~~~i~~~l~~LH~~~~ 518 (717)
..+..++||||+++++|.+++....... .....+++..++.++.||+.||+|||+.
T Consensus 121 -----~~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~~qi~~~l~~LH~~-- 193 (343)
T 1luf_A 121 -----VGKPMCLLFEYMAYGDLNEFLRSMSPHTVCSLSHSDLSTRARVSSPGPPPLSCAEQLCIARQVAAGMAYLSER-- 193 (343)
T ss_dssp -----SSSSCEEEEECCTTCBHHHHHHHTCC----------------------CCCCHHHHHHHHHHHHHHHHHHHHT--
T ss_pred -----cCCceEEEEecCCCCcHHHHHHHhCcccccccccccccccccccccCCCCCCHHHHHHHHHHHHHHHHHHHhC--
Confidence 4558899999999999999987532110 0115689999999999999999999998
Q ss_pred CCeeecCCCCCCEEeCCCCceEEeeeccchhcccccCCCCCCcceeecccccccccCCCccC-CCCCcccchhhHHHHHH
Q 005045 519 TPIAHCDLKPSNVLLDKDMTAHVGDFGLAKFLFEISDNPSKNQTVSIGLKGSIGYIPPEHMN-GQVSILGDIYSYGILLL 597 (717)
Q Consensus 519 ~~ivH~dlkp~NIll~~~~~~kl~Dfg~~~~~~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~-~~~~~~sDvwslG~vl~ 597 (717)
+|+||||||+||+++.++.+||+|||.+........ ........+++.|+|||++. +.++.++|||||||++|
T Consensus 194 -~ivH~Dlkp~NIl~~~~~~~kl~Dfg~~~~~~~~~~-----~~~~~~~~~t~~y~aPE~~~~~~~~~~~Di~slG~il~ 267 (343)
T 1luf_A 194 -KFVHRDLATRNCLVGENMVVKIADFGLSRNIYSADY-----YKADGNDAIPIRWMPPESIFYNRYTTESDVWAYGVVLW 267 (343)
T ss_dssp -TCCCSCCSGGGEEECGGGCEEECCCSCHHHHTGGGC-----BC----CCBCGGGCCHHHHHHCCCCHHHHHHHHHHHHH
T ss_pred -CeecCCCCcceEEECCCCeEEEeecCCCcccccCcc-----ccccCCCcccceecChhhhccCCcCcccccHHHHHHHH
Confidence 999999999999999999999999999987632211 11223345788999999964 46899999999999999
Q ss_pred HHHh-CCCCCCCCCCCchhhhHHHHhcCChhhhhhcCCCCCCCCCCcHHHHHHHHHHHHHHhhhhhhhcchhhhHHHHHH
Q 005045 598 EMFT-GKRPTGDMFKDDFSIHMFVSMALPDHVMDILDPSMPLDEENDEEQIEEVIEEKEMMIHIDLEVNTKNKLEECFVS 676 (717)
Q Consensus 598 ellt-g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 676 (717)
+|++ |..||....... ..... .+..... .+..++..
T Consensus 268 el~t~g~~p~~~~~~~~--~~~~~-----------~~~~~~~------------------------------~~~~~~~~ 304 (343)
T 1luf_A 268 EIFSYGLQPYYGMAHEE--VIYYV-----------RDGNILA------------------------------CPENCPLE 304 (343)
T ss_dssp HHHTTTCCTTTTSCHHH--HHHHH-----------HTTCCCC------------------------------CCTTCCHH
T ss_pred HHHhcCCCcCCCCChHH--HHHHH-----------hCCCcCC------------------------------CCCCCCHH
Confidence 9999 999997542211 11111 1111100 11123566
Q ss_pred HHHHhhccCCCCcCCCCCHHHHHHHHHHHHHHHH
Q 005045 677 VLRIGLMCSTTSPRERIAMNVVVNNLKTIRNCFL 710 (717)
Q Consensus 677 l~~li~~cl~~~p~~Rps~~eil~~l~~i~~~~~ 710 (717)
+.+++.+||+.+|++|||+.||++.|+++.++..
T Consensus 305 l~~li~~~l~~~p~~Rps~~~~~~~L~~~~~~~~ 338 (343)
T 1luf_A 305 LYNLMRLCWSKLPADRPSFCSIHRILQRMCERAE 338 (343)
T ss_dssp HHHHHHHHTCSSGGGSCCHHHHHHHHHHTTC---
T ss_pred HHHHHHHHcccCcccCCCHHHHHHHHHHHHhhhh
Confidence 8899999999999999999999999999876543
No 133
>4aw2_A Serine/threonine-protein kinase MRCK alpha; transferase, CDC42BPA; HET: 22E; 1.70A {Rattus norvegicus} PDB: 3tku_A* 3qfv_A*
Probab=100.00 E-value=7.7e-39 Score=344.70 Aligned_cols=262 Identities=20% Similarity=0.262 Sum_probs=203.8
Q ss_pred CcccccccccccccccccCcccccceEEEEeC-CCchhhhHHhHhhh---hhHHHHHHHHHHHHhcCCCCceeEEEEeec
Q 005045 380 SYSDISKSTDNFSKENLIGTGSFGSVYKGTLG-DGTIVAIKVLKLQQ---QGALKSFIDECNALKSTRHRNILRVITACS 455 (717)
Q Consensus 380 s~~~~~~~~~~y~~~~~ig~g~~g~v~~~~~~-~~~~vavK~~~~~~---~~~~~~~~~e~~~l~~l~h~ni~~~~~~~~ 455 (717)
.+.++....++|++.++||+|+||.||+|+++ +++.||+|++.... ......+.+|+.+++.++||||+++++++
T Consensus 65 ~~~~~~~~~~~y~~~~~LG~G~fG~V~~~~~~~~~~~vAvK~~~~~~~~~~~~~~~~~~E~~il~~~~hp~Iv~l~~~~- 143 (437)
T 4aw2_A 65 KVKQMRLHREDFEILKVIGRGAFGEVAVVKLKNADKVFAMKILNKWEMLKRAETACFREERDVLVNGDSKWITTLHYAF- 143 (437)
T ss_dssp HHHHHSCCGGGEEEEEEEEECSSEEEEEEEETTTTEEEEEEEEEHHHHHHTTTTCCHHHHHHHHHHSCTTTBCCEEEEE-
T ss_pred hhhcccCChhheEEEEEEEeCCCEEEEEEEEcCCCcEEEEEEEEHHHhhhHHHHHHHHHHHHHHHhCCCCCEEEEEEEE-
Confidence 35566677899999999999999999999976 68899999986532 22334588999999999999999999995
Q ss_pred cccCCCCceEEEEEecCCCCChhhhccCCCCCcccccccCHHHHHHHHHHHHHHHHHHHhcCCCCeeecCCCCCCEEeCC
Q 005045 456 SVDLEGNDFKALVFEFMSNGNLDQWLHPSPAEHYQFKKLSVIQRLNIAIDVASALDYLHHHCDTPIAHCDLKPSNVLLDK 535 (717)
Q Consensus 456 ~~~~~~~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~dlkp~NIll~~ 535 (717)
.+.+..|+||||+++|+|.+++.... ..+++..++.++.||+.||+|||+. +|+||||||+||+++.
T Consensus 144 ----~~~~~~~lV~Ey~~gg~L~~~l~~~~------~~l~e~~~~~~~~qi~~aL~~LH~~---giiHrDLKp~NILl~~ 210 (437)
T 4aw2_A 144 ----QDDNNLYLVMDYYVGGDLLTLLSKFE------DRLPEEMARFYLAEMVIAIDSVHQL---HYVHRDIKPDNILMDM 210 (437)
T ss_dssp ----ECSSEEEEEECCCTTCBHHHHHHTTT------TCCCHHHHHHHHHHHHHHHHHHHHT---TEECCCCSGGGEEECT
T ss_pred ----eeCCEEEEEEecCCCCcHHHHHHHcc------CCCCHHHHHHHHHHHHHHHHHHHhC---CeEecccCHHHeeEcC
Confidence 44568999999999999999997632 5689999999999999999999998 9999999999999999
Q ss_pred CCceEEeeeccchhcccccCCCCCCcceeecccccccccCCCccC------CCCCcccchhhHHHHHHHHHhCCCCCCCC
Q 005045 536 DMTAHVGDFGLAKFLFEISDNPSKNQTVSIGLKGSIGYIPPEHMN------GQVSILGDIYSYGILLLEMFTGKRPTGDM 609 (717)
Q Consensus 536 ~~~~kl~Dfg~~~~~~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~------~~~~~~sDvwslG~vl~elltg~~p~~~~ 609 (717)
+|.+||+|||+++.... ..........||+.|+|||++. +.++.++|||||||++|||++|..||...
T Consensus 211 ~g~vkL~DFGla~~~~~------~~~~~~~~~~GT~~Y~APE~l~~~~~~~~~~~~~~DvwSlGvil~elltG~~Pf~~~ 284 (437)
T 4aw2_A 211 NGHIRLADFGSCLKLME------DGTVQSSVAVGTPDYISPEILQAMEGGKGRYGPECDWWSLGVCMYEMLYGETPFYAE 284 (437)
T ss_dssp TSCEEECCCTTCEECCT------TSCEECCSCCSCGGGCCHHHHHHHHTSCCEECTHHHHHHHHHHHHHHHHSSCTTCCS
T ss_pred CCCEEEcchhhhhhccc------CCCcccccccCCcCeeChHHHhhcccCCCCCCCcCeeHHHHHHHHHHHhCCCCCCCC
Confidence 99999999999976521 1112223457999999999964 35899999999999999999999999754
Q ss_pred CCCchhhhHHHHhcCChhhhhhcCCCCCCCCCCcHHHHHHHHHHHHHHhhhhhhhcchhhhHHHHHHHHHHhhccCCCCc
Q 005045 610 FKDDFSIHMFVSMALPDHVMDILDPSMPLDEENDEEQIEEVIEEKEMMIHIDLEVNTKNKLEECFVSVLRIGLMCSTTSP 689 (717)
Q Consensus 610 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~cl~~~p 689 (717)
...+. ....... ... ...+.. ....+..+.+++.+|+..+|
T Consensus 285 ~~~~~-~~~i~~~-----~~~---~~~p~~------------------------------~~~~s~~~~dLi~~lL~~~~ 325 (437)
T 4aw2_A 285 SLVET-YGKIMNH-----KER---FQFPTQ------------------------------VTDVSENAKDLIRRLICSRE 325 (437)
T ss_dssp SHHHH-HHHHHTH-----HHH---CCCCSS------------------------------CCCSCHHHHHHHHTTSSCGG
T ss_pred ChhHH-HHhhhhc-----ccc---ccCCcc------------------------------cccCCHHHHHHHHHHhcccc
Confidence 22111 0000000 000 000000 01124567889999999988
Q ss_pred CC--CCCHHHHHH
Q 005045 690 RE--RIAMNVVVN 700 (717)
Q Consensus 690 ~~--Rps~~eil~ 700 (717)
++ ||+++|+++
T Consensus 326 ~r~~r~~~~eil~ 338 (437)
T 4aw2_A 326 HRLGQNGIEDFKK 338 (437)
T ss_dssp GCTTTTTTHHHHT
T ss_pred cccCCCCHHHHhC
Confidence 88 999999875
No 134
>1opk_A P150, C-ABL, proto-oncogene tyrosine-protein kinase ABL1; transferase; HET: MYR P16; 1.80A {Mus musculus} SCOP: b.34.2.1 d.93.1.1 d.144.1.7 PDB: 1opl_A* 2fo0_A* 2abl_A
Probab=100.00 E-value=3.8e-39 Score=354.95 Aligned_cols=263 Identities=24% Similarity=0.460 Sum_probs=210.6
Q ss_pred cccccccccccccccccCcccccceEEEEeC-CCchhhhHHhHhhhhhHHHHHHHHHHHHhcCCCCceeEEEEeeccccC
Q 005045 381 YSDISKSTDNFSKENLIGTGSFGSVYKGTLG-DGTIVAIKVLKLQQQGALKSFIDECNALKSTRHRNILRVITACSSVDL 459 (717)
Q Consensus 381 ~~~~~~~~~~y~~~~~ig~g~~g~v~~~~~~-~~~~vavK~~~~~~~~~~~~~~~e~~~l~~l~h~ni~~~~~~~~~~~~ 459 (717)
+..+.....+|++.++||+|+||.||+|.++ +++.||+|.+..... ..+.+.+|++++++++||||+++++++.
T Consensus 212 ~~~~~~~~~~~~~~~~lG~G~fg~Vy~~~~~~~~~~vavK~~~~~~~-~~~~~~~E~~~l~~l~hpniv~l~~~~~---- 286 (495)
T 1opk_A 212 YDKWEMERTDITMKHKLGGGQYGEVYEGVWKKYSLTVAVKTLKEDTM-EVEEFLKEAAVMKEIKHPNLVQLLGVCT---- 286 (495)
T ss_dssp SSCCBCCGGGEEEEEESGGGTTSSEEEEEEGGGTEEEEEEECCSSSS-CHHHHHHHHHHHHHCCCTTBCCEEEEEC----
T ss_pred ccccccCHHHceeeeEecCCCCeEEEEEEEcCCCeEEEEEEecCccc-chHHHHHHHHHHHhcCCCCEeeEEEEEe----
Confidence 4556667889999999999999999999976 588999999875432 3577899999999999999999999964
Q ss_pred CCCceEEEEEecCCCCChhhhccCCCCCcccccccCHHHHHHHHHHHHHHHHHHHhcCCCCeeecCCCCCCEEeCCCCce
Q 005045 460 EGNDFKALVFEFMSNGNLDQWLHPSPAEHYQFKKLSVIQRLNIAIDVASALDYLHHHCDTPIAHCDLKPSNVLLDKDMTA 539 (717)
Q Consensus 460 ~~~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~dlkp~NIll~~~~~~ 539 (717)
.....++||||+++++|.+++..... ..+++..+..++.||+.||+|||+. +|+||||||+||+++.++.+
T Consensus 287 -~~~~~~lv~E~~~~g~L~~~l~~~~~-----~~~~~~~~~~i~~qi~~~L~~LH~~---~ivHrDlkp~NIll~~~~~~ 357 (495)
T 1opk_A 287 -REPPFYIITEFMTYGNLLDYLRECNR-----QEVSAVVLLYMATQISSAMEYLEKK---NFIHRNLAARNCLVGENHLV 357 (495)
T ss_dssp -SSSSCEEEEECCTTCBHHHHHHHSCT-----TTSCHHHHHHHHHHHHHHHHHHHHT---TEECSCCSGGGEEECGGGCE
T ss_pred -cCCcEEEEEEccCCCCHHHHHHhcCc-----CCCCHHHHHHHHHHHHHHHHHHHhC---CcccCCCChhhEEECCCCcE
Confidence 34578999999999999999975421 4689999999999999999999998 99999999999999999999
Q ss_pred EEeeeccchhcccccCCCCCCcceeecccccccccCCCccC-CCCCcccchhhHHHHHHHHHh-CCCCCCCCCCCchhhh
Q 005045 540 HVGDFGLAKFLFEISDNPSKNQTVSIGLKGSIGYIPPEHMN-GQVSILGDIYSYGILLLEMFT-GKRPTGDMFKDDFSIH 617 (717)
Q Consensus 540 kl~Dfg~~~~~~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~-~~~~~~sDvwslG~vl~ellt-g~~p~~~~~~~~~~~~ 617 (717)
||+|||+++.... ..........++..|+|||++. +.++.++|||||||++|||++ |..||....... ..
T Consensus 358 kl~DFG~a~~~~~------~~~~~~~~~~~~~~y~aPE~~~~~~~~~~sDvwSlG~~l~el~t~g~~p~~~~~~~~--~~ 429 (495)
T 1opk_A 358 KVADFGLSRLMTG------DTYTAHAGAKFPIKWTAPESLAYNKFSIKSDVWAFGVLLWEIATYGMSPYPGIDLSQ--VY 429 (495)
T ss_dssp EECCTTCEECCTT------CCEECCTTCCCCGGGCCHHHHHHCEECHHHHHHHHHHHHHHHHTTSCCSSTTCCGGG--HH
T ss_pred EEeecccceeccC------CceeecCCCcCCcceeCHhHHhcCCCCcHHhHHhHHHHHHHHHhCCCCCCCCCCHHH--HH
Confidence 9999999986521 1111222344677899999965 458999999999999999999 999997653221 11
Q ss_pred HHHHhcCChhhhhhcCCCCCCCCCCcHHHHHHHHHHHHHHhhhhhhhcchhhhHHHHHHHHHHhhccCCCCcCCCCCHHH
Q 005045 618 MFVSMALPDHVMDILDPSMPLDEENDEEQIEEVIEEKEMMIHIDLEVNTKNKLEECFVSVLRIGLMCSTTSPRERIAMNV 697 (717)
Q Consensus 618 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~cl~~~p~~Rps~~e 697 (717)
..+. ..... ..+..++..+.+++.+||+.+|++|||++|
T Consensus 430 ~~~~------------~~~~~-----------------------------~~~~~~~~~l~~li~~cl~~dP~~RPs~~e 468 (495)
T 1opk_A 430 ELLE------------KDYRM-----------------------------ERPEGCPEKVYELMRACWQWNPSDRPSFAE 468 (495)
T ss_dssp HHHH------------TTCCC-----------------------------CCCTTCCHHHHHHHHHHTCSSGGGSCCHHH
T ss_pred HHHH------------cCCCC-----------------------------CCCCCCCHHHHHHHHHHcCcChhHCcCHHH
Confidence 1111 11000 012234667889999999999999999999
Q ss_pred HHHHHHHHH
Q 005045 698 VVNNLKTIR 706 (717)
Q Consensus 698 il~~l~~i~ 706 (717)
|++.|+.+.
T Consensus 469 l~~~L~~~~ 477 (495)
T 1opk_A 469 IHQAFETMF 477 (495)
T ss_dssp HHHHHHTSC
T ss_pred HHHHHHHHH
Confidence 999999875
No 135
>3dbq_A Dual specificity protein kinase TTK; MPS1 structure, kinase activation, phosphorylation, ATP- binding, nucleotide-binding, phosphoprotein; 2.70A {Homo sapiens}
Probab=100.00 E-value=3.7e-39 Score=339.04 Aligned_cols=255 Identities=25% Similarity=0.396 Sum_probs=196.3
Q ss_pred ccccccccccccccCcccccceEEEEeCCCchhhhHHhHhh--hhhHHHHHHHHHHHHhcCCC--CceeEEEEeeccccC
Q 005045 384 ISKSTDNFSKENLIGTGSFGSVYKGTLGDGTIVAIKVLKLQ--QQGALKSFIDECNALKSTRH--RNILRVITACSSVDL 459 (717)
Q Consensus 384 ~~~~~~~y~~~~~ig~g~~g~v~~~~~~~~~~vavK~~~~~--~~~~~~~~~~e~~~l~~l~h--~ni~~~~~~~~~~~~ 459 (717)
+....++|++.+.||+|+||.||+|.+.+++.||+|++... .....+.+.+|+++++++.| +||+++++++.
T Consensus 4 i~~~~~~y~i~~~lG~G~~g~Vy~~~~~~~~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~~~~~~iv~~~~~~~---- 79 (343)
T 3dbq_A 4 ISVKGRIYSILKQIGSGGSSKVFQVLNEKKQIYAIKYVNLEEADNQTLDSYRNEIAYLNKLQQHSDKIIRLYDYEI---- 79 (343)
T ss_dssp EESSSCEEEEEEEESCCSSEEEEEEECTTSCEEEEEEEECTTCCHHHHHHHHHHHHHHHHHTTTCTTBCCEEEEEE----
T ss_pred eeeecCEEEEEEEEecCCCeEEEEEEeCCCCEEEEEEeeccccchHHHHHHHHHHHHHHhhhhcCCceEEEeeeEe----
Confidence 34567889999999999999999999888999999998644 33445788999999999976 99999999954
Q ss_pred CCCceEEEEEecCCCCChhhhccCCCCCcccccccCHHHHHHHHHHHHHHHHHHHhcCCCCeeecCCCCCCEEeCCCCce
Q 005045 460 EGNDFKALVFEFMSNGNLDQWLHPSPAEHYQFKKLSVIQRLNIAIDVASALDYLHHHCDTPIAHCDLKPSNVLLDKDMTA 539 (717)
Q Consensus 460 ~~~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~dlkp~NIll~~~~~~ 539 (717)
.....++|||+ .+++|.+++... ..+++..+..++.||+.||+|||+. +|+||||||+||+++ ++.+
T Consensus 80 -~~~~~~lv~e~-~~~~L~~~l~~~-------~~~~~~~~~~i~~qi~~al~~lH~~---~iiHrDikp~NIll~-~~~~ 146 (343)
T 3dbq_A 80 -TDQYIYMVMEC-GNIDLNSWLKKK-------KSIDPWERKSYWKNMLEAVHTIHQH---GIVHSDLKPANFLIV-DGML 146 (343)
T ss_dssp -CSSEEEEEECC-CSEEHHHHHHHS-------CCCCHHHHHHHHHHHHHHHHHHHHT---TCCCCCCCGGGEEEE-TTEE
T ss_pred -eCCEEEEEEeC-CCCCHHHHHHhc-------CCCCHHHHHHHHHHHHHHHHHHHhC---CeecCCCCcceEEEE-CCcE
Confidence 45589999995 578999999754 5689999999999999999999998 999999999999997 6889
Q ss_pred EEeeeccchhcccccCCCCCCcceeecccccccccCCCccC------------CCCCcccchhhHHHHHHHHHhCCCCCC
Q 005045 540 HVGDFGLAKFLFEISDNPSKNQTVSIGLKGSIGYIPPEHMN------------GQVSILGDIYSYGILLLEMFTGKRPTG 607 (717)
Q Consensus 540 kl~Dfg~~~~~~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~------------~~~~~~sDvwslG~vl~elltg~~p~~ 607 (717)
||+|||.+...... ..........||+.|+|||++. +.++.++|||||||++|+|++|..||.
T Consensus 147 kl~DFG~a~~~~~~-----~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~~~~~~~~~~~DiwslG~il~ell~g~~pf~ 221 (343)
T 3dbq_A 147 KLIDFGIANQMQPD-----TTSVVKDSQVGTVNYMPPEAIKDMSSSRENGKSKSKISPKSDVWSLGCILYYMTYGKTPFQ 221 (343)
T ss_dssp EECCCSSSCCC-----------------CCCCSSCCHHHHHHCC-----------CCHHHHHHHHHHHHHHHHHSSCTTT
T ss_pred EEeecccccccCcc-----cccccCCCCcCCcCcCCHHHHhhccccccccccccCCCchhhHHHHHHHHHHHHhCCCcch
Confidence 99999999865211 1111223456999999999963 457899999999999999999999997
Q ss_pred CCCCCchhhhHHHHhcCChhhhhhcCCCCCCCCCCcHHHHHHHHHHHHHHhhhhhhhcchhhhHHHHHHHHHHhhccCCC
Q 005045 608 DMFKDDFSIHMFVSMALPDHVMDILDPSMPLDEENDEEQIEEVIEEKEMMIHIDLEVNTKNKLEECFVSVLRIGLMCSTT 687 (717)
Q Consensus 608 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~cl~~ 687 (717)
........ +...+++...... +..++..+.+++.+||+.
T Consensus 222 ~~~~~~~~------------~~~~~~~~~~~~~-----------------------------~~~~~~~l~~li~~~L~~ 260 (343)
T 3dbq_A 222 QIINQISK------------LHAIIDPNHEIEF-----------------------------PDIPEKDLQDVLKCCLKR 260 (343)
T ss_dssp TCCSHHHH------------HHHHHCTTSCCCC-----------------------------CCCSCHHHHHHHHHHTCS
T ss_pred hhhhHHHH------------HHHHhcCCcccCC-----------------------------cccCCHHHHHHHHHHcCC
Confidence 54322111 1112222111110 011134578899999999
Q ss_pred CcCCCCCHHHHHHH
Q 005045 688 SPRERIAMNVVVNN 701 (717)
Q Consensus 688 ~p~~Rps~~eil~~ 701 (717)
+|++|||+.|+++.
T Consensus 261 dp~~Rpt~~e~l~h 274 (343)
T 3dbq_A 261 DPKQRISIPELLAH 274 (343)
T ss_dssp STTTSCCHHHHHTS
T ss_pred ChhHCCCHHHHHhC
Confidence 99999999999864
No 136
>3kmu_A ILK, integrin-linked kinase; cell adhesion, ANK repeat, ATP-binding, cell junction, cell membrane, integrin-binding protein, membrane, nucleotide- binding; 1.80A {Homo sapiens} SCOP: d.144.1.0 PDB: 3kmw_A* 3rep_A*
Probab=100.00 E-value=6.3e-39 Score=325.82 Aligned_cols=257 Identities=23% Similarity=0.386 Sum_probs=204.0
Q ss_pred cccccccccccccCcccccceEEEEeCCCchhhhHHhHhhh--hhHHHHHHHHHHHHhcCCCCceeEEEEeeccccCCCC
Q 005045 385 SKSTDNFSKENLIGTGSFGSVYKGTLGDGTIVAIKVLKLQQ--QGALKSFIDECNALKSTRHRNILRVITACSSVDLEGN 462 (717)
Q Consensus 385 ~~~~~~y~~~~~ig~g~~g~v~~~~~~~~~~vavK~~~~~~--~~~~~~~~~e~~~l~~l~h~ni~~~~~~~~~~~~~~~ 462 (717)
....++|++.+.||+|+||.||+|++. ++.||+|++.... ....+.+.+|++++++++||||+++++++... ..
T Consensus 6 ~i~~~~y~~~~~lg~G~~g~V~~~~~~-~~~~avK~~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~---~~ 81 (271)
T 3kmu_A 6 GIDFKQLNFLTKLNENHSGELWKGRWQ-GNDIVVKVLKVRDWSTRKSRDFNEECPRLRIFSHPNVLPVLGACQSP---PA 81 (271)
T ss_dssp CCCGGGCEEEEEEEEETTEEEEEEEET-TEEEEEEEECCTTCCHHHHHHHHHHGGGGCCCSCTTEECEEEEECTT---TS
T ss_pred CCCHHHhHHHHHhcCCCcceEEEEEEC-CeeEEEEEecccccCHHHHHHHHHHHHHHHhcCCCchhheEEEEccC---CC
Confidence 345679999999999999999999985 8889999987542 34457799999999999999999999996432 23
Q ss_pred ceEEEEEecCCCCChhhhccCCCCCcccccccCHHHHHHHHHHHHHHHHHHHhcCCCC--eeecCCCCCCEEeCCCCceE
Q 005045 463 DFKALVFEFMSNGNLDQWLHPSPAEHYQFKKLSVIQRLNIAIDVASALDYLHHHCDTP--IAHCDLKPSNVLLDKDMTAH 540 (717)
Q Consensus 463 ~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~i~~~i~~~l~~LH~~~~~~--ivH~dlkp~NIll~~~~~~k 540 (717)
...++||||+++++|.+++..... ..+++..+..++.||+.||+|||+. + ++||||||+||+++.++.++
T Consensus 82 ~~~~lv~e~~~~~~L~~~l~~~~~-----~~~~~~~~~~i~~qi~~~l~~lH~~---~~~i~H~dikp~Nil~~~~~~~~ 153 (271)
T 3kmu_A 82 PHPTLITHWMPYGSLYNVLHEGTN-----FVVDQSQAVKFALDMARGMAFLHTL---EPLIPRHALNSRSVMIDEDMTAR 153 (271)
T ss_dssp SSCEEEEECCTTCBHHHHHHSCSS-----CCCCHHHHHHHHHHHHHHHHHHTTS---SSCCTTCCCSGGGEEECTTSCEE
T ss_pred CCeEeeecccCCCcHHHHHhhccc-----CCCCHHHHHHHHHHHHHHHHHHhcC---CCceecCCCccceEEEcCCccee
Confidence 578999999999999999986531 3589999999999999999999997 7 99999999999999999999
Q ss_pred EeeeccchhcccccCCCCCCcceeecccccccccCCCccCCC-C---CcccchhhHHHHHHHHHhCCCCCCCCCCCchhh
Q 005045 541 VGDFGLAKFLFEISDNPSKNQTVSIGLKGSIGYIPPEHMNGQ-V---SILGDIYSYGILLLEMFTGKRPTGDMFKDDFSI 616 (717)
Q Consensus 541 l~Dfg~~~~~~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~-~---~~~sDvwslG~vl~elltg~~p~~~~~~~~~~~ 616 (717)
|+|||.+... ......+|+.|+|||++.+. + +.++|||||||++|+|++|..||..........
T Consensus 154 l~~~~~~~~~------------~~~~~~~t~~y~aPE~~~~~~~~~~~~~~Di~slG~il~el~~g~~p~~~~~~~~~~~ 221 (271)
T 3kmu_A 154 ISMADVKFSF------------QSPGRMYAPAWVAPEALQKKPEDTNRRSADMWSFAVLLWELVTREVPFADLSNMEIGM 221 (271)
T ss_dssp EEGGGSCCTT------------SCTTCBSCGGGSCHHHHHSCGGGSCHHHHHHHHHHHHHHHHHHCSCTTTTSCHHHHHH
T ss_pred EEeccceeee------------cccCccCCccccChhhhccCCCCCCCchhhHHHHHHHHHHHHhCCCCccccChHHHHH
Confidence 9998876542 11224578999999997654 3 347999999999999999999997543221100
Q ss_pred hHHHHhcCChhhhhhcCCCCCCCCCCcHHHHHHHHHHHHHHhhhhhhhcchhhhHHHHHHHHHHhhccCCCCcCCCCCHH
Q 005045 617 HMFVSMALPDHVMDILDPSMPLDEENDEEQIEEVIEEKEMMIHIDLEVNTKNKLEECFVSVLRIGLMCSTTSPRERIAMN 696 (717)
Q Consensus 617 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~cl~~~p~~Rps~~ 696 (717)
.... ....+.. +..++..+.+++.+||+.+|++|||++
T Consensus 222 -~~~~--------~~~~~~~---------------------------------~~~~~~~~~~li~~~l~~~p~~Rps~~ 259 (271)
T 3kmu_A 222 -KVAL--------EGLRPTI---------------------------------PPGISPHVSKLMKICMNEDPAKRPKFD 259 (271)
T ss_dssp -HHHH--------SCCCCCC---------------------------------CTTCCHHHHHHHHHHTCSSGGGSCCHH
T ss_pred -HHHh--------cCCCCCC---------------------------------CCCCCHHHHHHHHHHcCCChhhCcCHH
Confidence 0000 0011111 112255688999999999999999999
Q ss_pred HHHHHHHHHHH
Q 005045 697 VVVNNLKTIRN 707 (717)
Q Consensus 697 eil~~l~~i~~ 707 (717)
|+++.|+++++
T Consensus 260 ~il~~L~~l~~ 270 (271)
T 3kmu_A 260 MIVPILEKMQD 270 (271)
T ss_dssp HHHHHHHHHCC
T ss_pred HHHHHHHHhhc
Confidence 99999998864
No 137
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=100.00 E-value=5e-37 Score=336.82 Aligned_cols=324 Identities=28% Similarity=0.365 Sum_probs=283.6
Q ss_pred eecEEEcCCCcCcCCCCcCCcCCCCCCEEECCCCcccccCCcCCCCCCCCCEEEccCccccccCCccccCCCCCCEEecc
Q 005045 11 MTQDLNLTYNYLSGKIPTNLSHCTELRSFEASVNDFVGQIPNQLSSLTKLEIIGLGGSNLTGNVPAWIGNFSSLKALSLA 90 (717)
Q Consensus 11 ~~~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~ 90 (717)
.++.|++++|.++. +|. +..+++|++|+|++|.+++.. . +.++++|++|++++|.+++..+ +.++++|++|+|+
T Consensus 47 ~l~~L~l~~~~i~~-l~~-~~~l~~L~~L~Ls~n~l~~~~-~-~~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~L~ 120 (466)
T 1o6v_A 47 QVTTLQADRLGIKS-IDG-VEYLNNLTQINFSNNQLTDIT-P-LKNLTKLVDILMNNNQIADITP--LANLTNLTGLTLF 120 (466)
T ss_dssp TCCEEECCSSCCCC-CTT-GGGCTTCCEEECCSSCCCCCG-G-GTTCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECC
T ss_pred cccEEecCCCCCcc-Ccc-hhhhcCCCEEECCCCccCCch-h-hhccccCCEEECCCCccccChh--hcCCCCCCEEECC
Confidence 78999999999984 564 899999999999999999554 4 9999999999999999995444 9999999999999
Q ss_pred CCcCcccCChhhhccCCCCeEeccCCCCCCCCCccccCCCCccEEEcccCcccccCCcccccCCCCcceeeccccccccc
Q 005045 91 WNNLRGSIPNELGQLSGLGFFTLYGNFISGIIPSSIYNISSIYYFSVTQNQLHGQLPTDVGLTLPNLKIFAGAVNYFTGS 170 (717)
Q Consensus 91 ~n~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~~l~~~~~~~l~~L~~L~l~~n~l~~~ 170 (717)
+|.+++..+ +..+++|++|+|++|.+++. ..+.++++|++|+++ |.+. .++. +..+++|+.|++++|.+...
T Consensus 121 ~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~l~-~~~~-~~~~--~~~l~~L~~L~l~~n~l~~~ 192 (466)
T 1o6v_A 121 NNQITDIDP--LKNLTNLNRLELSSNTISDI--SALSGLTSLQQLSFG-NQVT-DLKP--LANLTTLERLDISSNKVSDI 192 (466)
T ss_dssp SSCCCCCGG--GTTCTTCSEEEEEEEEECCC--GGGTTCTTCSEEEEE-ESCC-CCGG--GTTCTTCCEEECCSSCCCCC
T ss_pred CCCCCCChH--HcCCCCCCEEECCCCccCCC--hhhccCCcccEeecC-Cccc-Cchh--hccCCCCCEEECcCCcCCCC
Confidence 999995543 99999999999999999953 359999999999997 5665 3433 56899999999999999854
Q ss_pred CCccCCCCCCCCEEeccCccccccCCCCccCCCCCCeeeccccccCCcccCchhhhhhhccCCCCCEEEeecCcccCcCc
Q 005045 171 IPVSLSNASNLQVLDFAENGLTGTIPGNFGSLKDLVRLNFDQNELGSREIGDLNFLKFLANCTSLEVLGLARNSFGGEMP 250 (717)
Q Consensus 171 ~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~~~p 250 (717)
..+..+++|++|++++|.+++..| +..+++|+.|++++|.++.++ .+..+++|+.|++++|.+++..+
T Consensus 193 --~~l~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~~--------~l~~l~~L~~L~l~~n~l~~~~~ 260 (466)
T 1o6v_A 193 --SVLAKLTNLESLIATNNQISDITP--LGILTNLDELSLNGNQLKDIG--------TLASLTNLTDLDLANNQISNLAP 260 (466)
T ss_dssp --GGGGGCTTCSEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCCCG--------GGGGCTTCSEEECCSSCCCCCGG
T ss_pred --hhhccCCCCCEEEecCCccccccc--ccccCCCCEEECCCCCcccch--------hhhcCCCCCEEECCCCccccchh
Confidence 458899999999999999996655 788999999999999998853 47889999999999999995544
Q ss_pred hhhhhccccccEEecCCCccCCCCCccccCCCCCCEEEccCCcCccccchhhhcCCCCCeEEcccCcCCCCCCccccccc
Q 005045 251 ISIANLSTHLRRLTMGENLMHGNIPVGIGNLVNLNLLGLEGNNLSGSVPEVIGRLNKLEGLGLNVNKFSGLIPSSLGNLT 330 (717)
Q Consensus 251 ~~~~~~~~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~ 330 (717)
+..+ ++|+.|++++|.+.+..+ +..+++|+.|++++|++++..+ +..+++|+.|+|++|++++..| +..++
T Consensus 261 --~~~l-~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~L~~n~l~~~~~--~~~l~ 331 (466)
T 1o6v_A 261 --LSGL-TKLTELKLGANQISNISP--LAGLTALTNLELNENQLEDISP--ISNLKNLTYLTLYFNNISDISP--VSSLT 331 (466)
T ss_dssp --GTTC-TTCSEEECCSSCCCCCGG--GTTCTTCSEEECCSSCCSCCGG--GGGCTTCSEEECCSSCCSCCGG--GGGCT
T ss_pred --hhcC-CCCCEEECCCCccCcccc--ccCCCccCeEEcCCCcccCchh--hcCCCCCCEEECcCCcCCCchh--hccCc
Confidence 5566 599999999999986544 8899999999999999996544 8899999999999999998865 78999
Q ss_pred ccceeecccccccccCCcCccCcCCCceEEeecccCCCCCC
Q 005045 331 ILTRLWMEENRLEGSIPPSLGNCQKLLVLNLSSNDLNGTIP 371 (717)
Q Consensus 331 ~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p 371 (717)
+|+.|++++|++++. ..+..+++|+.|++++|++++..|
T Consensus 332 ~L~~L~l~~n~l~~~--~~l~~l~~L~~L~l~~n~l~~~~~ 370 (466)
T 1o6v_A 332 KLQRLFFYNNKVSDV--SSLANLTNINWLSAGHNQISDLTP 370 (466)
T ss_dssp TCCEEECCSSCCCCC--GGGTTCTTCCEEECCSSCCCBCGG
T ss_pred cCCEeECCCCccCCc--hhhccCCCCCEEeCCCCccCccch
Confidence 999999999999954 578999999999999999997766
No 138
>3g33_A Cell division protein kinase 4; Ser/Thr protein kinase, cell cycle, phosphorylation, ATP-BIN cell division, disease mutation, kinase; 3.00A {Homo sapiens}
Probab=100.00 E-value=5.5e-39 Score=332.72 Aligned_cols=280 Identities=25% Similarity=0.350 Sum_probs=198.3
Q ss_pred cccccccccccCcccccceEEEEeC-CCchhhhHHhHhhh-----hhHHHHHHHHHHHHhcC---CCCceeEEEEeeccc
Q 005045 387 STDNFSKENLIGTGSFGSVYKGTLG-DGTIVAIKVLKLQQ-----QGALKSFIDECNALKST---RHRNILRVITACSSV 457 (717)
Q Consensus 387 ~~~~y~~~~~ig~g~~g~v~~~~~~-~~~~vavK~~~~~~-----~~~~~~~~~e~~~l~~l---~h~ni~~~~~~~~~~ 457 (717)
..++|++.++||+|+||.||+|++. +++.||+|++.... ......+.+|+++++++ .||||+++++++...
T Consensus 7 ~~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~~~e~~~l~~l~~~~h~niv~~~~~~~~~ 86 (308)
T 3g33_A 7 ATSRYEPVAEIGVGAYGTVYKARDPHSGHFVALKSVRVPNGGGGGGGLPISTVREVALLRRLEAFEHPNVVRLMDVCATS 86 (308)
T ss_dssp ---CCEEEEEECCSSSCCEEEEECTTTCCEEEEEEEEEECCCTTSSCCCHHHHHHHHHHHHHHHHCCTTBCCEEEEEEEC
T ss_pred cccceEEEEEEecCCCeEEEEEEECCCCcEEEEEEEecccccccccccchhHHHHHHHHHHHhhcCCCCeEEeeeeeecc
Confidence 4679999999999999999999964 78999999986432 11124556677776666 599999999997654
Q ss_pred cCCCCceEEEEEecCCCCChhhhccCCCCCcccccccCHHHHHHHHHHHHHHHHHHHhcCCCCeeecCCCCCCEEeCCCC
Q 005045 458 DLEGNDFKALVFEFMSNGNLDQWLHPSPAEHYQFKKLSVIQRLNIAIDVASALDYLHHHCDTPIAHCDLKPSNVLLDKDM 537 (717)
Q Consensus 458 ~~~~~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~dlkp~NIll~~~~ 537 (717)
........++||||+. ++|.+++..... ..+++..+..++.||+.||+|||+. +|+||||||+||+++.++
T Consensus 87 ~~~~~~~~~lv~e~~~-~~L~~~~~~~~~-----~~~~~~~~~~i~~qi~~al~~lH~~---~ivH~Dlkp~Nil~~~~~ 157 (308)
T 3g33_A 87 RTDREIKVTLVFEHVD-QDLRTYLDKAPP-----PGLPAETIKDLMRQFLRGLDFLHAN---CIVHRDLKPENILVTSGG 157 (308)
T ss_dssp CSSSEEEEEEEEECCC-CBHHHHHHTCCT-----TCSCHHHHHHHHHHHHHHHHHHHHT---TCCCSCCCTTTEEECTTS
T ss_pred CCCCceeEEEEehhhh-cCHHHHHhhccC-----CCCCHHHHHHHHHHHHHHHHHHHHC---CcccCCCCHHHEEEcCCC
Confidence 4333446899999996 699999876532 4489999999999999999999998 999999999999999999
Q ss_pred ceEEeeeccchhcccccCCCCCCcceeecccccccccCCCcc-CCCCCcccchhhHHHHHHHHHhCCCCCCCCCCCchhh
Q 005045 538 TAHVGDFGLAKFLFEISDNPSKNQTVSIGLKGSIGYIPPEHM-NGQVSILGDIYSYGILLLEMFTGKRPTGDMFKDDFSI 616 (717)
Q Consensus 538 ~~kl~Dfg~~~~~~~~~~~~~~~~~~~~~~~~~~~y~aPE~~-~~~~~~~sDvwslG~vl~elltg~~p~~~~~~~~~~~ 616 (717)
.+||+|||.+.... .........||+.|+|||++ .+.++.++|||||||++|+|++|..||......+...
T Consensus 158 ~~kl~Dfg~a~~~~--------~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~~l~~g~~pf~~~~~~~~~~ 229 (308)
T 3g33_A 158 TVKLADFGLARIYS--------YQMALTPVVVTLWYRAPEVLLQSTYATPVDMWSVGCIFAEMFRRKPLFCGNSEADQLG 229 (308)
T ss_dssp CEEECSCSCTTTST--------TCCCSGGGGCCCSSCCHHHHHTSCCCSTHHHHHHHHHHHHTTTSSCSCCCSSHHHHHH
T ss_pred CEEEeeCccccccC--------CCcccCCccccccccCchHHcCCCCCchHHHHHHHHHHHHHHhCCCCCCCCCHHHHHH
Confidence 99999999998651 11222346789999999996 4568999999999999999999999997653322111
Q ss_pred hHHHHhcCChhhhhhcCCCCCCCCCCcHHHHHHHHHHHHHHhhhhhhhcchhhhHHHHHHHHHHhhccCCCCcCCCCCHH
Q 005045 617 HMFVSMALPDHVMDILDPSMPLDEENDEEQIEEVIEEKEMMIHIDLEVNTKNKLEECFVSVLRIGLMCSTTSPRERIAMN 696 (717)
Q Consensus 617 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~cl~~~p~~Rps~~ 696 (717)
........+.. ..+........ . ..............++++..+.+++.+||++||++|||+.
T Consensus 230 ~i~~~~~~~~~--~~~~~~~~~~~-~--------------~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~R~t~~ 292 (308)
T 3g33_A 230 KIFDLIGLPPE--DDWPRDVSLPR-G--------------AFPPRGPRPVQSVVPEMEESGAQLLLEMLTFNPHKRISAF 292 (308)
T ss_dssp HHHHHHCCCCT--TTSCSSCSSCG-G--------------GSCCCCCCCHHHHSCSCCHHHHHHHHHHTCSSTTTSCCHH
T ss_pred HHHHHhCCCCh--hhccchhhccc-c--------------ccCCCCCCcHHHhCccccHHHHHHHHHHhcCCCccCCCHH
Confidence 11111111100 00000000000 0 0000000000011123356788999999999999999999
Q ss_pred HHHH
Q 005045 697 VVVN 700 (717)
Q Consensus 697 eil~ 700 (717)
|+++
T Consensus 293 e~l~ 296 (308)
T 3g33_A 293 RALQ 296 (308)
T ss_dssp HHHT
T ss_pred HHhc
Confidence 9986
No 139
>2ac3_A MAP kinase-interacting serine/threonine kinase 2; DFD motif, transferase; 2.10A {Homo sapiens} PDB: 2hw7_A* 2ac5_A* 2hw6_A
Probab=100.00 E-value=7.8e-39 Score=332.94 Aligned_cols=274 Identities=22% Similarity=0.275 Sum_probs=196.5
Q ss_pred cccccccc-cccCcccccceEEEEeC-CCchhhhHHhHhhhhhHHHHHHHHHHHHhcC-CCCceeEEEEeeccccCCCCc
Q 005045 387 STDNFSKE-NLIGTGSFGSVYKGTLG-DGTIVAIKVLKLQQQGALKSFIDECNALKST-RHRNILRVITACSSVDLEGND 463 (717)
Q Consensus 387 ~~~~y~~~-~~ig~g~~g~v~~~~~~-~~~~vavK~~~~~~~~~~~~~~~e~~~l~~l-~h~ni~~~~~~~~~~~~~~~~ 463 (717)
..++|++. +.||+|+||.||+|.+. +++.||+|++..........+.+|++++.++ +||||+++++++. +.+
T Consensus 10 ~~~~y~i~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~E~~~l~~~~~h~~i~~~~~~~~-----~~~ 84 (316)
T 2ac3_A 10 FEDVYQLQEDVLGEGAHARVQTCINLITSQEYAVKIIEKQPGHIRSRVFREVEMLYQCQGHRNVLELIEFFE-----EED 84 (316)
T ss_dssp TTTSCEECCCCCCCCSSEEEEEEECSSSCCEEEEEEEECCSSCCHHHHHHHHHHHHHTCCCTTBCCEEEEEE-----ETT
T ss_pred cceeEEecCceecCCceEEEEEEEEcCCCcEEEEEEEeeCcchhHHHHHHHHHHHHHhcCCCCeeeEEEEEe-----eCC
Confidence 45688885 78999999999999954 7999999998765545567888999999985 7999999999954 445
Q ss_pred eEEEEEecCCCCChhhhccCCCCCcccccccCHHHHHHHHHHHHHHHHHHHhcCCCCeeecCCCCCCEEeCCCCc---eE
Q 005045 464 FKALVFEFMSNGNLDQWLHPSPAEHYQFKKLSVIQRLNIAIDVASALDYLHHHCDTPIAHCDLKPSNVLLDKDMT---AH 540 (717)
Q Consensus 464 ~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~dlkp~NIll~~~~~---~k 540 (717)
..++||||+++++|.+++... ..+++..+..++.||+.||+|||+. +|+||||||+||+++.++. +|
T Consensus 85 ~~~lv~e~~~~~~L~~~l~~~-------~~~~~~~~~~i~~qi~~~l~~lH~~---~ivH~dlkp~Nil~~~~~~~~~~k 154 (316)
T 2ac3_A 85 RFYLVFEKMRGGSILSHIHKR-------RHFNELEASVVVQDVASALDFLHNK---GIAHRDLKPENILCEHPNQVSPVK 154 (316)
T ss_dssp EEEEEEECCTTCBHHHHHHHH-------SSCCHHHHHHHHHHHHHHHHHHHHT---TCCCCCCCGGGEEESCSSSSCSEE
T ss_pred EEEEEEEcCCCCcHHHHHhcc-------CCCCHHHHHHHHHHHHHHHHHHHhC---CceeCCCCHHHEEEccCCCcCceE
Confidence 899999999999999999754 5689999999999999999999998 9999999999999998775 99
Q ss_pred EeeeccchhcccccCCCCCCcceeecccccccccCCCccCC------CCCcccchhhHHHHHHHHHhCCCCCCCCCCCch
Q 005045 541 VGDFGLAKFLFEISDNPSKNQTVSIGLKGSIGYIPPEHMNG------QVSILGDIYSYGILLLEMFTGKRPTGDMFKDDF 614 (717)
Q Consensus 541 l~Dfg~~~~~~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~------~~~~~sDvwslG~vl~elltg~~p~~~~~~~~~ 614 (717)
|+|||.+.....................||+.|+|||++.+ .++.++|||||||++|+|++|..||......+.
T Consensus 155 l~Dfg~~~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~~~~~DiwslG~il~~l~~g~~pf~~~~~~~~ 234 (316)
T 2ac3_A 155 ICDFDLGSGIKLNGDCSPISTPELLTPCGSAEYMAPEVVEAFSEEASIYDKRCDLWSLGVILYILLSGYPPFVGRCGSDC 234 (316)
T ss_dssp ECCTTCCC-------------------CCSGGGCCHHHHHHTSHHHHHHTTTHHHHHHHHHHHHHHHSSCSCCCCCCSCS
T ss_pred EEEccCccccccCCccccccccccccccCCcCccChHHhhcccccccCCCcccccHhHHHHHHHHHHCCCCCcccccccc
Confidence 99999987653221111111112223458999999999653 478999999999999999999999977543321
Q ss_pred hhhHHHHhcCChhhhhhcCCCCCCCCCCcHHHHHHHHHHHHHHhhhhhhhcchhhhHHHHHHHHHHhhccCCCCcCCCCC
Q 005045 615 SIHMFVSMALPDHVMDILDPSMPLDEENDEEQIEEVIEEKEMMIHIDLEVNTKNKLEECFVSVLRIGLMCSTTSPRERIA 694 (717)
Q Consensus 615 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~cl~~~p~~Rps 694 (717)
..... . ........+....... .... .......++..+.+++.+||+.||++|||
T Consensus 235 ~~~~~---~------------------~~~~~~~~~~~~i~~~-~~~~---~~~~~~~~~~~~~~li~~~L~~dP~~Rps 289 (316)
T 2ac3_A 235 GWDRG---E------------------ACPACQNMLFESIQEG-KYEF---PDKDWAHISCAAKDLISKLLVRDAKQRLS 289 (316)
T ss_dssp CC-------------------------CCHHHHHHHHHHHHHC-CCCC---CHHHHTTSCHHHHHHHHHHSCSSTTTSCC
T ss_pred ccccc---c------------------cchhHHHHHHHHHhcc-Cccc---CchhcccCCHHHHHHHHHHhhCChhhCCC
Confidence 11000 0 0000000000000000 0000 00011223567889999999999999999
Q ss_pred HHHHHH
Q 005045 695 MNVVVN 700 (717)
Q Consensus 695 ~~eil~ 700 (717)
++|+++
T Consensus 290 ~~e~l~ 295 (316)
T 2ac3_A 290 AAQVLQ 295 (316)
T ss_dssp HHHHHH
T ss_pred HHHHhc
Confidence 999987
No 140
>2wqm_A Serine/threonine-protein kinase NEK7; ATP-binding, polymorphism, metal-binding, cell cycle kinase, mitosis, cytoplasm, magnesium, transferase; 2.10A {Homo sapiens} PDB: 2wqn_A*
Probab=100.00 E-value=2.7e-38 Score=327.83 Aligned_cols=269 Identities=25% Similarity=0.384 Sum_probs=198.9
Q ss_pred cccccccccccccCcccccceEEEEeC-CCchhhhHHhHhh---hhhHHHHHHHHHHHHhcCCCCceeEEEEeeccccCC
Q 005045 385 SKSTDNFSKENLIGTGSFGSVYKGTLG-DGTIVAIKVLKLQ---QQGALKSFIDECNALKSTRHRNILRVITACSSVDLE 460 (717)
Q Consensus 385 ~~~~~~y~~~~~ig~g~~g~v~~~~~~-~~~~vavK~~~~~---~~~~~~~~~~e~~~l~~l~h~ni~~~~~~~~~~~~~ 460 (717)
....++|++.+.||+|+||.||+|... +|+.||+|++... .......+.+|++++++++||||+++++++..
T Consensus 28 ~~~~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~---- 103 (310)
T 2wqm_A 28 YNTLANFRIEKKIGRGQFSEVYRAACLLDGVPVALKKVQIFDLMDAKARADCIKEIDLLKQLNHPNVIKYYASFIE---- 103 (310)
T ss_dssp TSSGGGEEEEEEEECC--CEEEEEEETTTCCEEEEEEECTTSSCCHHHHHHHHHHHHHHHTCCCTTBCCEEEEEEE----
T ss_pred cccccceEEEEeecCCCCceEEEEEEcCCCceEEEEeeehhhccCHHHHHHHHHHHHHHHhCCCCCEeeEEEEEEc----
Confidence 345678999999999999999999964 8999999988642 34456788999999999999999999999643
Q ss_pred CCceEEEEEecCCCCChhhhccCCCCCcccccccCHHHHHHHHHHHHHHHHHHHhcCCCCeeecCCCCCCEEeCCCCceE
Q 005045 461 GNDFKALVFEFMSNGNLDQWLHPSPAEHYQFKKLSVIQRLNIAIDVASALDYLHHHCDTPIAHCDLKPSNVLLDKDMTAH 540 (717)
Q Consensus 461 ~~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~dlkp~NIll~~~~~~k 540 (717)
.+..++||||+++++|.+++..... ....+++..+..++.||+.||+|||+. +++||||||+||+++.++.+|
T Consensus 104 -~~~~~lv~e~~~~~~L~~~l~~~~~---~~~~~~~~~~~~i~~qi~~~l~~LH~~---~i~H~dl~p~NIl~~~~~~~k 176 (310)
T 2wqm_A 104 -DNELNIVLELADAGDLSRMIKHFKK---QKRLIPERTVWKYFVQLCSALEHMHSR---RVMHRDIKPANVFITATGVVK 176 (310)
T ss_dssp -TTEEEEEEECCCSCBHHHHHHHHHH---TTCCCCHHHHHHHHHHHHHHHHHHHHT---TCCCCCCCGGGEEECTTSCEE
T ss_pred -CCcEEEEEecCCCCCHHHHHHHhcc---cccCCCHHHHHHHHHHHHHHHHHHhhC---CeeCCCCcHHHEEEcCCCCEE
Confidence 4589999999999999999863210 115689999999999999999999998 999999999999999999999
Q ss_pred EeeeccchhcccccCCCCCCcceeecccccccccCCCccCC-CCCcccchhhHHHHHHHHHhCCCCCCCCCCCchhhhHH
Q 005045 541 VGDFGLAKFLFEISDNPSKNQTVSIGLKGSIGYIPPEHMNG-QVSILGDIYSYGILLLEMFTGKRPTGDMFKDDFSIHMF 619 (717)
Q Consensus 541 l~Dfg~~~~~~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~-~~~~~sDvwslG~vl~elltg~~p~~~~~~~~~~~~~~ 619 (717)
|+|||.+...... ........++..|+|||++.+ .++.++|||||||++|+|++|..||.............
T Consensus 177 l~Dfg~~~~~~~~-------~~~~~~~~~~~~y~aPE~~~~~~~~~~~Dv~slG~il~~l~~g~~p~~~~~~~~~~~~~~ 249 (310)
T 2wqm_A 177 LGDLGLGRFFSSK-------TTAAHSLVGTPYYMSPERIHENGYNFKSDIWSLGCLLYEMAALQSPFYGDKMNLYSLCKK 249 (310)
T ss_dssp ECCC-------------------------CCSSCCHHHHTTCCCCHHHHHHHHHHHHHHHHHSSCTTC---CCHHHHHHH
T ss_pred EEeccceeeecCC-------CccccccCCCeeEeChHHhCCCCCCchhhHHHHHHHHHHHHhCCCCCcccchhHHHHHHH
Confidence 9999998765211 111223468999999999654 58999999999999999999999996543221111111
Q ss_pred HHhcCChhhhhhcCCCCCCCCCCcHHHHHHHHHHHHHHhhhhhhhcchhhhHHHHHHHHHHhhccCCCCcCCCCCHHHHH
Q 005045 620 VSMALPDHVMDILDPSMPLDEENDEEQIEEVIEEKEMMIHIDLEVNTKNKLEECFVSVLRIGLMCSTTSPRERIAMNVVV 699 (717)
Q Consensus 620 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~cl~~~p~~Rps~~eil 699 (717)
... .-.+... ...++..+.+++.+||+.+|++|||++||+
T Consensus 250 ~~~--------~~~~~~~--------------------------------~~~~~~~l~~li~~~l~~dp~~Rps~~~il 289 (310)
T 2wqm_A 250 IEQ--------CDYPPLP--------------------------------SDHYSEELRQLVNMCINPDPEKRPDVTYVY 289 (310)
T ss_dssp HHT--------TCSCCCC--------------------------------TTTSCHHHHHHHHHHTCSSGGGSCCHHHHH
T ss_pred hhc--------ccCCCCc--------------------------------ccccCHHHHHHHHHHcCCChhhCCCHHHHH
Confidence 110 0000000 011255688999999999999999999999
Q ss_pred HHHHHHHHHHHh
Q 005045 700 NNLKTIRNCFLE 711 (717)
Q Consensus 700 ~~l~~i~~~~~~ 711 (717)
+.|++++....+
T Consensus 290 ~~l~~l~~~~~~ 301 (310)
T 2wqm_A 290 DVAKRMHACTAS 301 (310)
T ss_dssp HHHHHHHHHHC-
T ss_pred HHHHHHHHhhhh
Confidence 999999977654
No 141
>3f66_A Hepatocyte growth factor receptor; C-Met, protein kinase, quinoxaline, alternative splicing, ATP-binding, chromosomal rearrangement; HET: IHX; 1.40A {Homo sapiens} PDB: 3i5n_A* 3u6h_A* 3u6i_A* 4deg_A* 4deh_A* 4dei_A* 3ccn_A* 2rfn_A* 2rfs_A* 3cd8_A* 3efj_A* 3efk_A* 3lq8_A* 3zxz_A* 2wkm_A* 2wgj_A* 3zze_A* 4aoi_A* 4ap7_A* 3q6w_A* ...
Probab=100.00 E-value=9.4e-39 Score=329.37 Aligned_cols=268 Identities=26% Similarity=0.458 Sum_probs=205.5
Q ss_pred ccccccccccccccCcccccceEEEEeCC----CchhhhHHhHhh-hhhHHHHHHHHHHHHhcCCCCceeEEEEeecccc
Q 005045 384 ISKSTDNFSKENLIGTGSFGSVYKGTLGD----GTIVAIKVLKLQ-QQGALKSFIDECNALKSTRHRNILRVITACSSVD 458 (717)
Q Consensus 384 ~~~~~~~y~~~~~ig~g~~g~v~~~~~~~----~~~vavK~~~~~-~~~~~~~~~~e~~~l~~l~h~ni~~~~~~~~~~~ 458 (717)
+.....+|++.+.||+|+||.||+|.+.. ...||+|.+... .....+.+.+|++++++++||||+++++++
T Consensus 20 i~~~~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~~~~~avk~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~---- 95 (298)
T 3f66_A 20 IGPSSLIVHFNEVIGRGHFGCVYHGTLLDNDGKKIHCAVKSLNRITDIGEVSQFLTEGIIMKDFSHPNVLSLLGIC---- 95 (298)
T ss_dssp CCGGGEEEEEEEEEEEETTEEEEEEEEC-----CEEEEEEEETTCCSHHHHHHHHHHHHHHHTCCCTTBCCCCEEE----
T ss_pred cCccceehhhcceeeecCCceEEEEEEecCCCceeEEEEEecccCCCHHHHHHHHHHHHHHHhCCCCCEeeeeeEE----
Confidence 34556789999999999999999998542 235788887643 334567889999999999999999999986
Q ss_pred CCCCceEEEEEecCCCCChhhhccCCCCCcccccccCHHHHHHHHHHHHHHHHHHHhcCCCCeeecCCCCCCEEeCCCCc
Q 005045 459 LEGNDFKALVFEFMSNGNLDQWLHPSPAEHYQFKKLSVIQRLNIAIDVASALDYLHHHCDTPIAHCDLKPSNVLLDKDMT 538 (717)
Q Consensus 459 ~~~~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~dlkp~NIll~~~~~ 538 (717)
....+..++||||+++++|.+++.... ..+++..+..++.|++.||+|||+. +++||||||+||+++.++.
T Consensus 96 ~~~~~~~~~v~e~~~~~~L~~~l~~~~------~~~~~~~~~~i~~ql~~~l~~lH~~---~i~H~dikp~Nil~~~~~~ 166 (298)
T 3f66_A 96 LRSEGSPLVVLPYMKHGDLRNFIRNET------HNPTVKDLIGFGLQVAKGMKYLASK---KFVHRDLAARNCMLDEKFT 166 (298)
T ss_dssp CCSSSCCEEEEECCTTCBHHHHHHCTT------CCCCHHHHHHHHHHHHHHHHHHHHT---TCCCSCCSGGGEEECTTCC
T ss_pred EcCCCceEEEEeCCCCCCHHHHHHhcc------cCCCHHHHHHHHHHHHHHHHHHHhC---CccCCCCchheEEECCCCC
Confidence 334567899999999999999997543 5679999999999999999999998 9999999999999999999
Q ss_pred eEEeeeccchhcccccCCCCCCcceeecccccccccCCCccCC-CCCcccchhhHHHHHHHHHh-CCCCCCCCCCCchhh
Q 005045 539 AHVGDFGLAKFLFEISDNPSKNQTVSIGLKGSIGYIPPEHMNG-QVSILGDIYSYGILLLEMFT-GKRPTGDMFKDDFSI 616 (717)
Q Consensus 539 ~kl~Dfg~~~~~~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~-~~~~~sDvwslG~vl~ellt-g~~p~~~~~~~~~~~ 616 (717)
+||+|||.+......... .........+++.|+|||.+.+ .++.++|||||||++|+|++ |.+||......+...
T Consensus 167 ~kl~Dfg~a~~~~~~~~~---~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~~~~~~~~~~~~~~~~~ 243 (298)
T 3f66_A 167 VKVADFGLARDMYDKEYY---SVHNKTGAKLPVKWMALESLQTQKFTTKSDVWSFGVLLWELMTRGAPPYPDVNTFDITV 243 (298)
T ss_dssp EEECSCGGGCCCSCGGGC---BC-----CCBCGGGSCHHHHHHCCCCHHHHHHHHHHHHHHHHTTSCCSSTTSCTTTHHH
T ss_pred EEECcccccccccccchh---ccccccCCCCCccccChHHhcCCCCChHHHHHHHHHHHHHHHhCCCCCCccCCHHHHHH
Confidence 999999999865322111 1122234557889999999654 58999999999999999999 555665443322111
Q ss_pred hHHHHhcCChhhhhhcCCCCCCCCCCcHHHHHHHHHHHHHHhhhhhhhcchhhhHHHHHHHHHHhhccCCCCcCCCCCHH
Q 005045 617 HMFVSMALPDHVMDILDPSMPLDEENDEEQIEEVIEEKEMMIHIDLEVNTKNKLEECFVSVLRIGLMCSTTSPRERIAMN 696 (717)
Q Consensus 617 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~cl~~~p~~Rps~~ 696 (717)
.... ..... .+..++..+.+++.+||+.+|++|||++
T Consensus 244 --~~~~-----------~~~~~------------------------------~~~~~~~~l~~li~~~l~~~p~~Rps~~ 280 (298)
T 3f66_A 244 --YLLQ-----------GRRLL------------------------------QPEYCPDPLYEVMLKCWHPKAEMRPSFS 280 (298)
T ss_dssp --HHHT-----------TCCCC------------------------------CCTTCCHHHHHHHHHHTCSSGGGSCCHH
T ss_pred --HHhc-----------CCCCC------------------------------CCccCCHHHHHHHHHHcCCChhhCcCHH
Confidence 1100 00000 0111245688999999999999999999
Q ss_pred HHHHHHHHHHHHHH
Q 005045 697 VVVNNLKTIRNCFL 710 (717)
Q Consensus 697 eil~~l~~i~~~~~ 710 (717)
|+++.|+++..++.
T Consensus 281 ell~~L~~~~~~~~ 294 (298)
T 3f66_A 281 ELVSRISAIFSTFI 294 (298)
T ss_dssp HHHHHHHHHHHTSC
T ss_pred HHHHHHHHHHHhhc
Confidence 99999999987654
No 142
>2x4f_A Myosin light chain kinase family member 4; LUNG, breast cancer, transferase, serine/threonine-protein kinase, nucleotide-binding; HET: 16X 1PE; 2.67A {Homo sapiens}
Probab=100.00 E-value=1.4e-38 Score=337.59 Aligned_cols=247 Identities=21% Similarity=0.289 Sum_probs=190.6
Q ss_pred ccccccCcccccceEEEEeC-CCchhhhHHhHhhhhhHHHHHHHHHHHHhcCCCCceeEEEEeeccccCCCCceEEEEEe
Q 005045 392 SKENLIGTGSFGSVYKGTLG-DGTIVAIKVLKLQQQGALKSFIDECNALKSTRHRNILRVITACSSVDLEGNDFKALVFE 470 (717)
Q Consensus 392 ~~~~~ig~g~~g~v~~~~~~-~~~~vavK~~~~~~~~~~~~~~~e~~~l~~l~h~ni~~~~~~~~~~~~~~~~~~~lv~e 470 (717)
...+.||+|+||.||+|... +|+.||+|++........+.+.+|++++++++||||+++++++. ..+..++|||
T Consensus 92 ~~~~~lG~G~~g~Vy~a~~~~~g~~vavK~~~~~~~~~~~~~~~E~~~l~~l~hpnIv~~~~~~~-----~~~~~~lv~E 166 (373)
T 2x4f_A 92 SKTEILGGGRFGQVHKCEETATGLKLAAKIIKTRGMKDKEEVKNEISVMNQLDHANLIQLYDAFE-----SKNDIVLVME 166 (373)
T ss_dssp EEEEECC-----CEEEEEETTTCCEEEEEEEECCSHHHHHHHHHHHHHHTTCCCTTBCCEEEEEE-----CSSEEEEEEE
T ss_pred ecceEEecCcCEEEEEEEEcCCCcEEEEEEEcccccccHHHHHHHHHHHHhCCCCCCCeEEEEEE-----ECCEEEEEEe
Confidence 33678999999999999964 79999999987665555678899999999999999999999954 4458999999
Q ss_pred cCCCCChhhhccCCCCCcccccccCHHHHHHHHHHHHHHHHHHHhcCCCCeeecCCCCCCEEe--CCCCceEEeeeccch
Q 005045 471 FMSNGNLDQWLHPSPAEHYQFKKLSVIQRLNIAIDVASALDYLHHHCDTPIAHCDLKPSNVLL--DKDMTAHVGDFGLAK 548 (717)
Q Consensus 471 ~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~dlkp~NIll--~~~~~~kl~Dfg~~~ 548 (717)
|+++++|.+++.... ..+++..+..++.||+.||+|||+. +|+||||||+||++ +.++.+||+|||++.
T Consensus 167 ~~~~~~L~~~l~~~~------~~l~~~~~~~i~~qi~~aL~~LH~~---~ivH~Dlkp~NIll~~~~~~~~kl~DFG~a~ 237 (373)
T 2x4f_A 167 YVDGGELFDRIIDES------YNLTELDTILFMKQICEGIRHMHQM---YILHLDLKPENILCVNRDAKQIKIIDFGLAR 237 (373)
T ss_dssp CCTTCEEHHHHHHTG------GGCCHHHHHHHHHHHHHHHHHHHHT---TEECCCCCGGGEEEEETTTTEEEECCCSSCE
T ss_pred CCCCCcHHHHHHhcC------CCCCHHHHHHHHHHHHHHHHHHHHC---CcccccCCHHHEEEecCCCCcEEEEeCCCce
Confidence 999999999886432 4689999999999999999999998 99999999999999 567899999999998
Q ss_pred hcccccCCCCCCcceeecccccccccCCCccCC-CCCcccchhhHHHHHHHHHhCCCCCCCCCCCchhhhHHHHhcCChh
Q 005045 549 FLFEISDNPSKNQTVSIGLKGSIGYIPPEHMNG-QVSILGDIYSYGILLLEMFTGKRPTGDMFKDDFSIHMFVSMALPDH 627 (717)
Q Consensus 549 ~~~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~-~~~~~sDvwslG~vl~elltg~~p~~~~~~~~~~~~~~~~~~~~~~ 627 (717)
..... .......||+.|+|||++.+ .++.++|||||||++|+|++|..||....... .....
T Consensus 238 ~~~~~--------~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~elltg~~pf~~~~~~~-~~~~i-------- 300 (373)
T 2x4f_A 238 RYKPR--------EKLKVNFGTPEFLAPEVVNYDFVSFPTDMWSVGVIAYMLLSGLSPFLGDNDAE-TLNNI-------- 300 (373)
T ss_dssp ECCTT--------CBCCCCCSSCTTCCHHHHTTCBCCHHHHHHHHHHHHHHHHHSSCTTCCSSHHH-HHHHH--------
T ss_pred ecCCc--------cccccccCCCcEeChhhccCCCCCcHHhHHHHHHHHHHHHhCCCCCCCCCHHH-HHHHH--------
Confidence 65211 11223458999999999765 47999999999999999999999997542211 11111
Q ss_pred hhhhcCCCCCCCCCCcHHHHHHHHHHHHHHhhhhhhhcchhhhHHHHHHHHHHhhccCCCCcCCCCCHHHHHH
Q 005045 628 VMDILDPSMPLDEENDEEQIEEVIEEKEMMIHIDLEVNTKNKLEECFVSVLRIGLMCSTTSPRERIAMNVVVN 700 (717)
Q Consensus 628 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~cl~~~p~~Rps~~eil~ 700 (717)
......... .....++..+.+++.+||+.+|++|||+.|+++
T Consensus 301 ----~~~~~~~~~---------------------------~~~~~~~~~~~~li~~~L~~dp~~Rps~~e~l~ 342 (373)
T 2x4f_A 301 ----LACRWDLED---------------------------EEFQDISEEAKEFISKLLIKEKSWRISASEALK 342 (373)
T ss_dssp ----HHTCCCSCS---------------------------GGGTTSCHHHHHHHHTTSCSSGGGSCCHHHHHH
T ss_pred ----HhccCCCCh---------------------------hhhccCCHHHHHHHHHHcCCChhhCCCHHHHhc
Confidence 110000000 011122556789999999999999999999997
No 143
>2i0e_A Protein kinase C-beta II; serine/threonine protein kinase, transferase; HET: TPO SEP PDS; 2.60A {Homo sapiens} PDB: 3iw4_A*
Probab=100.00 E-value=6.6e-39 Score=336.70 Aligned_cols=201 Identities=23% Similarity=0.344 Sum_probs=172.3
Q ss_pred cccccccccccCcccccceEEEEeC-CCchhhhHHhHhhh---hhHHHHHHHHHHHHhcC-CCCceeEEEEeeccccCCC
Q 005045 387 STDNFSKENLIGTGSFGSVYKGTLG-DGTIVAIKVLKLQQ---QGALKSFIDECNALKST-RHRNILRVITACSSVDLEG 461 (717)
Q Consensus 387 ~~~~y~~~~~ig~g~~g~v~~~~~~-~~~~vavK~~~~~~---~~~~~~~~~e~~~l~~l-~h~ni~~~~~~~~~~~~~~ 461 (717)
..++|++.+.||+|+||.||+|+.+ +++.||+|++.... ......+..|.++++.+ +||+|+++++++ ..
T Consensus 18 ~~~~y~~~~~lG~G~fg~V~~~~~~~~~~~~AiK~~~~~~~~~~~~~~~~~~E~~~l~~~~~hp~iv~l~~~~-----~~ 92 (353)
T 2i0e_A 18 KLTDFNFLMVLGKGSFGKVMLSERKGTDELYAVKILKKDVVIQDDDVECTMVEKRVLALPGKPPFLTQLHSCF-----QT 92 (353)
T ss_dssp -CTTEEEEEEEEEETTEEEEEEEETTEEEEEEEEEEEHHHHHHTTCHHHHHHHHHHHTCTTCCTTBCCEEEEE-----EC
T ss_pred chHHcEEEEEEeeCCCEEEEEEEECCCCCEEEEEEEEHHHhhcchHHHHHHHHHHHHHhcCCCCEEeeEEEEE-----Ec
Confidence 4578999999999999999999976 68899999987542 23456788999999988 899999999984 44
Q ss_pred CceEEEEEecCCCCChhhhccCCCCCcccccccCHHHHHHHHHHHHHHHHHHHhcCCCCeeecCCCCCCEEeCCCCceEE
Q 005045 462 NDFKALVFEFMSNGNLDQWLHPSPAEHYQFKKLSVIQRLNIAIDVASALDYLHHHCDTPIAHCDLKPSNVLLDKDMTAHV 541 (717)
Q Consensus 462 ~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~dlkp~NIll~~~~~~kl 541 (717)
.+..|+||||++||+|.+++... ..+++..++.++.||+.||+|||+. ||+||||||+||+++.+|.+||
T Consensus 93 ~~~~~lv~E~~~gg~L~~~l~~~-------~~~~~~~~~~~~~qi~~aL~~LH~~---givHrDlkp~NIll~~~g~vkL 162 (353)
T 2i0e_A 93 MDRLYFVMEYVNGGDLMYHIQQV-------GRFKEPHAVFYAAEIAIGLFFLQSK---GIIYRDLKLDNVMLDSEGHIKI 162 (353)
T ss_dssp SSEEEEEEECCCSCBHHHHHHHH-------SSCCHHHHHHHHHHHHHHHHHHHHT---TCBCCCCCGGGEEECTTSCEEE
T ss_pred CCEEEEEEeCCCCCcHHHHHHhc-------CCCCHHHHHHHHHHHHHHHHHHHHC---CEEeccCCHHHEEEcCCCcEEE
Confidence 56899999999999999998743 5689999999999999999999998 9999999999999999999999
Q ss_pred eeeccchhcccccCCCCCCcceeecccccccccCCCccCC-CCCcccchhhHHHHHHHHHhCCCCCCCC
Q 005045 542 GDFGLAKFLFEISDNPSKNQTVSIGLKGSIGYIPPEHMNG-QVSILGDIYSYGILLLEMFTGKRPTGDM 609 (717)
Q Consensus 542 ~Dfg~~~~~~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~-~~~~~sDvwslG~vl~elltg~~p~~~~ 609 (717)
+|||++..... .........||+.|+|||++.+ .++.++|||||||++|||++|..||...
T Consensus 163 ~DFG~a~~~~~-------~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~ell~G~~Pf~~~ 224 (353)
T 2i0e_A 163 ADFGMCKENIW-------DGVTTKTFCGTPDYIAPEIIAYQPYGKSVDWWAFGVLLYEMLAGQAPFEGE 224 (353)
T ss_dssp CCCTTCBCCCC-------TTCCBCCCCSCGGGCCHHHHTTCCBSTHHHHHHHHHHHHHHHHSSCSSCCS
T ss_pred EeCCccccccc-------CCcccccccCCccccChhhhcCCCcCCcccccchHHHHHHHHcCCCCCCCC
Confidence 99999875311 1112334679999999999765 5899999999999999999999999753
No 144
>1fmk_A C-SRC, P60-SRC, tyrosine-protein kinase SRC; tyrosine kinase, phosphorylation, SH2, SH3, phosphotyrosine, proto-oncogene, phosphotransferase; HET: PTR; 1.50A {Homo sapiens} SCOP: b.34.2.1 d.93.1.1 d.144.1.7 PDB: 1y57_A* 2src_A* 1ksw_A* 2ptk_A* 1yol_A* 2oiq_A* 3d7t_B* 3dqx_A* 3el7_A* 3el8_A* 3en4_A* 3en5_A* 3en6_A* 3en7_A* 3f6x_A* 3g6g_A* 3uqf_A* 3uqg_A* 4agw_A* 3oez_A* ...
Probab=100.00 E-value=2.5e-39 Score=352.69 Aligned_cols=265 Identities=28% Similarity=0.438 Sum_probs=206.6
Q ss_pred CCcccccccccccccccccCcccccceEEEEeCCCchhhhHHhHhhhhhHHHHHHHHHHHHhcCCCCceeEEEEeecccc
Q 005045 379 MSYSDISKSTDNFSKENLIGTGSFGSVYKGTLGDGTIVAIKVLKLQQQGALKSFIDECNALKSTRHRNILRVITACSSVD 458 (717)
Q Consensus 379 ~s~~~~~~~~~~y~~~~~ig~g~~g~v~~~~~~~~~~vavK~~~~~~~~~~~~~~~e~~~l~~l~h~ni~~~~~~~~~~~ 458 (717)
++...+....++|++.++||+|+||.||+|.++.+..||+|++..... ..+.+.+|++++++++||||+++++++..
T Consensus 174 ~~~~~~~i~~~~~~~~~~lG~G~fg~Vy~~~~~~~~~vavK~~~~~~~-~~~~~~~E~~~l~~l~hp~iv~~~~~~~~-- 250 (452)
T 1fmk_A 174 LAKDAWEIPRESLRLEVKLGQGCFGEVWMGTWNGTTRVAIKTLKPGTM-SPEAFLQEAQVMKKLRHEKLVQLYAVVSE-- 250 (452)
T ss_dssp SSTTCSBCCGGGEEEEEEEEECSSCEEEEEEETTTEEEEEEECCTTSS-CHHHHHHHHHHHHHCCCTTBCCEEEEECS--
T ss_pred CCccccccChhHceeeeeecCCCCeEEEEEEECCCceEEEEEeccCCC-CHHHHHHHHHHHHhCCCCCEeeEEEEEcC--
Confidence 345566777889999999999999999999988778899999875432 24678999999999999999999998632
Q ss_pred CCCCceEEEEEecCCCCChhhhccCCCCCcccccccCHHHHHHHHHHHHHHHHHHHhcCCCCeeecCCCCCCEEeCCCCc
Q 005045 459 LEGNDFKALVFEFMSNGNLDQWLHPSPAEHYQFKKLSVIQRLNIAIDVASALDYLHHHCDTPIAHCDLKPSNVLLDKDMT 538 (717)
Q Consensus 459 ~~~~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~dlkp~NIll~~~~~ 538 (717)
+..++||||+++++|.+++.... ...+++..+..++.||+.||+|||+. +|+||||||+||+++.++.
T Consensus 251 ----~~~~iv~e~~~~gsL~~~l~~~~-----~~~~~~~~~~~i~~qi~~~l~~LH~~---~ivHrDlkp~Nill~~~~~ 318 (452)
T 1fmk_A 251 ----EPIYIVTEYMSKGSLLDFLKGET-----GKYLRLPQLVDMAAQIASGMAYVERM---NYVHRDLRAANILVGENLV 318 (452)
T ss_dssp ----SSCEEEECCCTTCBHHHHHSHHH-----HTTCCHHHHHHHHHHHHHHHHHHHHT---TCCCSCCSGGGEEECGGGC
T ss_pred ----CceEEEehhhcCCCHHHHHHhcC-----CCCCCHHHHHHHHHHHHHHHHHHHhC---CeeCCCCChhhEEECCCCC
Confidence 46799999999999999997431 14589999999999999999999997 9999999999999999999
Q ss_pred eEEeeeccchhcccccCCCCCCcceeecccccccccCCCccC-CCCCcccchhhHHHHHHHHHh-CCCCCCCCCCCchhh
Q 005045 539 AHVGDFGLAKFLFEISDNPSKNQTVSIGLKGSIGYIPPEHMN-GQVSILGDIYSYGILLLEMFT-GKRPTGDMFKDDFSI 616 (717)
Q Consensus 539 ~kl~Dfg~~~~~~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~-~~~~~~sDvwslG~vl~ellt-g~~p~~~~~~~~~~~ 616 (717)
+||+|||+++..... .........++..|+|||++. +.++.++|||||||++|||++ |..||......+ .
T Consensus 319 ~kl~DfG~a~~~~~~------~~~~~~~~~~~~~y~aPE~~~~~~~~~~sDvwslG~~l~el~t~g~~P~~~~~~~~--~ 390 (452)
T 1fmk_A 319 CKVADFGLARLIEDN------EYTARQGAKFPIKWTAPEAALYGRFTIKSDVWSFGILLTELTTKGRVPYPGMVNRE--V 390 (452)
T ss_dssp EEECCCCTTC--------------------CCGGGSCHHHHHHCCCCHHHHHHHHHHHHHHHHTTTCCSSTTCCHHH--H
T ss_pred EEECCCccceecCCC------ceecccCCcccccccCHhHHhcCCCCccccHHhHHHHHHHHHhCCCCCCCCCCHHH--H
Confidence 999999999865211 111122344678899999954 568999999999999999999 999997542211 1
Q ss_pred hHHHHhcCChhhhhhcCCCCCCCCCCcHHHHHHHHHHHHHHhhhhhhhcchhhhHHHHHHHHHHhhccCCCCcCCCCCHH
Q 005045 617 HMFVSMALPDHVMDILDPSMPLDEENDEEQIEEVIEEKEMMIHIDLEVNTKNKLEECFVSVLRIGLMCSTTSPRERIAMN 696 (717)
Q Consensus 617 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~cl~~~p~~Rps~~ 696 (717)
...+... . .. +.+..++..+.+++.+||+.+|++|||++
T Consensus 391 ~~~i~~~--------~--~~-------------------------------~~~~~~~~~l~~li~~cl~~dP~~Rpt~~ 429 (452)
T 1fmk_A 391 LDQVERG--------Y--RM-------------------------------PCPPECPESLHDLMCQCWRKEPEERPTFE 429 (452)
T ss_dssp HHHHHTT--------C--CC-------------------------------CCCTTSCHHHHHHHHHHTCSSGGGSCCHH
T ss_pred HHHHHcC--------C--CC-------------------------------CCCCCCCHHHHHHHHHHccCChhhCcCHH
Confidence 1111000 0 00 01123466788999999999999999999
Q ss_pred HHHHHHHHHHH
Q 005045 697 VVVNNLKTIRN 707 (717)
Q Consensus 697 eil~~l~~i~~ 707 (717)
+|++.|+.+..
T Consensus 430 ~l~~~L~~~~~ 440 (452)
T 1fmk_A 430 YLQAFLEDYFT 440 (452)
T ss_dssp HHHHHHHTTTS
T ss_pred HHHHHHHHHhc
Confidence 99999988754
No 145
>3rp9_A Mitogen-activated protein kinase; structural genomics, structural genomics consortium, SGC, TR; 2.40A {Toxoplasma gondii}
Probab=100.00 E-value=6.3e-39 Score=351.12 Aligned_cols=205 Identities=24% Similarity=0.349 Sum_probs=158.2
Q ss_pred cccccccccccCcccccceEEEEeC-CCchhhhHHhHhh--hhhHHHHHHHHHHHHhcCCCCceeEEEEeeccccCCCCc
Q 005045 387 STDNFSKENLIGTGSFGSVYKGTLG-DGTIVAIKVLKLQ--QQGALKSFIDECNALKSTRHRNILRVITACSSVDLEGND 463 (717)
Q Consensus 387 ~~~~y~~~~~ig~g~~g~v~~~~~~-~~~~vavK~~~~~--~~~~~~~~~~e~~~l~~l~h~ni~~~~~~~~~~~~~~~~ 463 (717)
..++|++.+.||+|+||.||+|+++ +++.||+|++... .....+++.+|++++++++||||+++++++.....+...
T Consensus 51 ~~~~y~~~~~lG~G~~g~V~~~~~~~~~~~vaiK~i~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~~~~ 130 (458)
T 3rp9_A 51 IPDRYEIRHLIGTGSYGHVCEAYDKLEKRVVAIKKILRVFEDLIDCKRILREIAILNRLNHDHVVKVLDIVIPKDVEKFD 130 (458)
T ss_dssp SCTTEEECCC-------CEEEEEECC--CEEEEEEECSTTSSHHHHHHHHHHHHHHHHCCCTTBCCEEEECCCSCTTTCC
T ss_pred cCCCeEEeeEeeecCCeEEEEEEECCCCcEEEEEEechhhcCHHHHHHHHHHHHHHHhCCCCCCCceEEEEecCCcccCc
Confidence 3478999999999999999999965 7899999988543 334457889999999999999999999997655445567
Q ss_pred eEEEEEecCCCCChhhhccCCCCCcccccccCHHHHHHHHHHHHHHHHHHHhcCCCCeeecCCCCCCEEeCCCCceEEee
Q 005045 464 FKALVFEFMSNGNLDQWLHPSPAEHYQFKKLSVIQRLNIAIDVASALDYLHHHCDTPIAHCDLKPSNVLLDKDMTAHVGD 543 (717)
Q Consensus 464 ~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~dlkp~NIll~~~~~~kl~D 543 (717)
..|+||||+ +++|.+++... ..+++..++.++.||+.||+|||+. +|+||||||+||+++.++.+||+|
T Consensus 131 ~~~lv~e~~-~~~L~~~~~~~-------~~l~~~~~~~~~~qi~~aL~~LH~~---~iiHrDlKp~NILl~~~~~~kl~D 199 (458)
T 3rp9_A 131 ELYVVLEIA-DSDFKKLFRTP-------VYLTELHIKTLLYNLLVGVKYVHSA---GILHRDLKPANCLVNQDCSVKVCD 199 (458)
T ss_dssp CEEEEECCC-SEEHHHHHHSS-------CCCCHHHHHHHHHHHHHHHHHHHHT---TCBCCCCCGGGEEECTTCCEEECC
T ss_pred eEEEEEecc-ccchhhhcccC-------CCCCHHHHHHHHHHHHHHHHHHHhC---CcCCCCCChhhEEECCCCCEeecc
Confidence 899999998 57999998754 5689999999999999999999998 999999999999999999999999
Q ss_pred eccchhcccccCCCCC--------------------CcceeecccccccccCCCcc-C-CCCCcccchhhHHHHHHHHHh
Q 005045 544 FGLAKFLFEISDNPSK--------------------NQTVSIGLKGSIGYIPPEHM-N-GQVSILGDIYSYGILLLEMFT 601 (717)
Q Consensus 544 fg~~~~~~~~~~~~~~--------------------~~~~~~~~~~~~~y~aPE~~-~-~~~~~~sDvwslG~vl~ellt 601 (717)
||+++........... .........||+.|+|||++ . +.++.++|||||||++|||++
T Consensus 200 FGla~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~Y~aPE~~~~~~~~~~~~DiwSlG~il~ellt 279 (458)
T 3rp9_A 200 FGLARTVDYPENGNSQLPISPREDDMNLVTFPHTKNLKRQLTGHVVTRWYRAPELILLQENYTEAIDVWSIGCIFAELLN 279 (458)
T ss_dssp CTTCBCTTSCTTCCCCCC---------------------------CCCTTCCHHHHTTCCCCCTHHHHHHHHHHHHHHHT
T ss_pred cccchhccCccccccccccCccccccccccccccccccccccCCcccccccChHHhhCCCCCCcHhHHHHHHHHHHHHHH
Confidence 9999876322111000 00123456789999999984 3 358999999999999999999
Q ss_pred C
Q 005045 602 G 602 (717)
Q Consensus 602 g 602 (717)
|
T Consensus 280 g 280 (458)
T 3rp9_A 280 M 280 (458)
T ss_dssp T
T ss_pred h
Confidence 4
No 146
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=100.00 E-value=1.8e-37 Score=332.40 Aligned_cols=314 Identities=17% Similarity=0.151 Sum_probs=237.0
Q ss_pred CCCCCCEEECCCCcccccCCcCCCCCCCCCEEEccCccccccCCccccCCCCCCEEeccCCcCcccCChhhhccCCCCeE
Q 005045 32 HCTELRSFEASVNDFVGQIPNQLSSLTKLEIIGLGGSNLTGNVPAWIGNFSSLKALSLAWNNLRGSIPNELGQLSGLGFF 111 (717)
Q Consensus 32 ~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L 111 (717)
.+++++.|++++|.++...+..|.++++|++|+|++|.+++..+..|..+++|++|+|++|.+++..|..|.++++|++|
T Consensus 43 ~l~~l~~l~l~~~~l~~l~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L 122 (390)
T 3o6n_A 43 TLNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVL 122 (390)
T ss_dssp GGCCCSEEEEESCEESEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEE
T ss_pred ccCCceEEEecCCchhhCChhHhcccccCcEEECCCCcccccChhhccCCCCcCEEECCCCCCCcCCHHHhcCCCCCCEE
Confidence 35677777777777774444446677777777777777776666677777777777777777776666777777777777
Q ss_pred eccCCCCCCCCCccccCCCCccEEEcccCcccccCCcccccCCCCcceeecccccccccCCccCCCCCCCCEEeccCccc
Q 005045 112 TLYGNFISGIIPSSIYNISSIYYFSVTQNQLHGQLPTDVGLTLPNLKIFAGAVNYFTGSIPVSLSNASNLQVLDFAENGL 191 (717)
Q Consensus 112 ~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~~l~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~l 191 (717)
+|++|.++.+.+..|.++++|++|+|++|.++ .++...+..+++|+.|++++|.++.. .+..+++|+.|++++|.+
T Consensus 123 ~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~-~~~~~~~~~l~~L~~L~l~~n~l~~~---~~~~l~~L~~L~l~~n~l 198 (390)
T 3o6n_A 123 VLERNDLSSLPRGIFHNTPKLTTLSMSNNNLE-RIEDDTFQATTSLQNLQLSSNRLTHV---DLSLIPSLFHANVSYNLL 198 (390)
T ss_dssp ECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC-BCCTTTTSSCTTCCEEECCSSCCSBC---CGGGCTTCSEEECCSSCC
T ss_pred ECCCCccCcCCHHHhcCCCCCcEEECCCCccC-ccChhhccCCCCCCEEECCCCcCCcc---ccccccccceeecccccc
Confidence 77777777655556677777777777777776 55555556777777777777777754 255567888888888877
Q ss_pred cccCCCCccCCCCCCeeeccccccCCcccCchhhhhhhccCCCCCEEEeecCcccCcCchhhhhccccccEEecCCCccC
Q 005045 192 TGTIPGNFGSLKDLVRLNFDQNELGSREIGDLNFLKFLANCTSLEVLGLARNSFGGEMPISIANLSTHLRRLTMGENLMH 271 (717)
Q Consensus 192 ~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~~~~L~~L~l~~N~l~ 271 (717)
++. ...++|+.|++++|.+..++. ...++|+.|++++|.+++ . ..+..+ ++|++|++++|.+.
T Consensus 199 ~~~-----~~~~~L~~L~l~~n~l~~~~~---------~~~~~L~~L~l~~n~l~~-~-~~l~~l-~~L~~L~Ls~n~l~ 261 (390)
T 3o6n_A 199 STL-----AIPIAVEELDASHNSINVVRG---------PVNVELTILKLQHNNLTD-T-AWLLNY-PGLVEVDLSYNELE 261 (390)
T ss_dssp SEE-----ECCSSCSEEECCSSCCCEEEC---------CCCSSCCEEECCSSCCCC-C-GGGGGC-TTCSEEECCSSCCC
T ss_pred ccc-----CCCCcceEEECCCCeeeeccc---------cccccccEEECCCCCCcc-c-HHHcCC-CCccEEECCCCcCC
Confidence 732 334578888888888877642 224678888888888884 3 355555 58899999999888
Q ss_pred CCCCccccCCCCCCEEEccCCcCccccchhhhcCCCCCeEEcccCcCCCCCCcccccccccceeecccccccccCCcCcc
Q 005045 272 GNIPVGIGNLVNLNLLGLEGNNLSGSVPEVIGRLNKLEGLGLNVNKFSGLIPSSLGNLTILTRLWMEENRLEGSIPPSLG 351 (717)
Q Consensus 272 ~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~ 351 (717)
+..|..|.++++|+.|+|++|+++ .+|..+..+++|++|+|++|+++++ |..+..+++|+.|+|++|+++. ++ +.
T Consensus 262 ~~~~~~~~~l~~L~~L~L~~n~l~-~~~~~~~~l~~L~~L~L~~n~l~~~-~~~~~~l~~L~~L~L~~N~i~~-~~--~~ 336 (390)
T 3o6n_A 262 KIMYHPFVKMQRLERLYISNNRLV-ALNLYGQPIPTLKVLDLSHNHLLHV-ERNQPQFDRLENLYLDHNSIVT-LK--LS 336 (390)
T ss_dssp EEESGGGTTCSSCCEEECCSSCCC-EEECSSSCCTTCCEEECCSSCCCCC-GGGHHHHTTCSEEECCSSCCCC-CC--CC
T ss_pred CcChhHccccccCCEEECCCCcCc-ccCcccCCCCCCCEEECCCCcceec-CccccccCcCCEEECCCCccce-eC--ch
Confidence 878888999999999999999998 4666777889999999999999854 6668889999999999999984 43 77
Q ss_pred CcCCCceEEeecccCCCCCC
Q 005045 352 NCQKLLVLNLSSNDLNGTIP 371 (717)
Q Consensus 352 ~l~~L~~L~l~~N~l~~~~p 371 (717)
.+++|+.|++++|++++...
T Consensus 337 ~~~~L~~L~l~~N~~~~~~~ 356 (390)
T 3o6n_A 337 THHTLKNLTLSHNDWDCNSL 356 (390)
T ss_dssp TTCCCSEEECCSSCEEHHHH
T ss_pred hhccCCEEEcCCCCccchhH
Confidence 88899999999999986543
No 147
>3mdy_A Bone morphogenetic protein receptor type-1B; complex (isomerase-protein kinase), receptor serine/threonin structural genomics consortium, SGC; HET: LDN; 2.05A {Homo sapiens} SCOP: d.144.1.7
Probab=100.00 E-value=3.2e-38 Score=331.48 Aligned_cols=278 Identities=24% Similarity=0.368 Sum_probs=201.5
Q ss_pred ccccccccccccccCcccccceEEEEeCCCchhhhHHhHhhhhhHHHHHHHHHHHHhcC--CCCceeEEEEeeccccCCC
Q 005045 384 ISKSTDNFSKENLIGTGSFGSVYKGTLGDGTIVAIKVLKLQQQGALKSFIDECNALKST--RHRNILRVITACSSVDLEG 461 (717)
Q Consensus 384 ~~~~~~~y~~~~~ig~g~~g~v~~~~~~~~~~vavK~~~~~~~~~~~~~~~e~~~l~~l--~h~ni~~~~~~~~~~~~~~ 461 (717)
.....++|++.+.||+|+||.||+|++. ++.||+|++..... ..+..|.+++... +||||+++++++.... ..
T Consensus 32 ~~~~~~~y~~~~~lg~G~~g~V~~~~~~-~~~vavK~~~~~~~---~~~~~e~~~~~~~~~~h~~i~~~~~~~~~~~-~~ 106 (337)
T 3mdy_A 32 QRTIAKQIQMVKQIGKGRYGEVWMGKWR-GEKVAVKVFFTTEE---ASWFRETEIYQTVLMRHENILGFIAADIKGT-GS 106 (337)
T ss_dssp HTTHHHHCEEEEEEEEETTEEEEEEEET-TEEEEEEEEEGGGH---HHHHHHHHHHTSTTCCCTTBCCEEEEEEESC-GG
T ss_pred ccccccceEEEeEeecCCCeEEEEEEEC-CceEEEEEEecccc---chhhhHHHHHHHHhhcCCCeeeEEEEEccCC-CC
Confidence 3445689999999999999999999985 89999999864432 3344455555554 9999999999875431 22
Q ss_pred CceEEEEEecCCCCChhhhccCCCCCcccccccCHHHHHHHHHHHHHHHHHHHhcC-----CCCeeecCCCCCCEEeCCC
Q 005045 462 NDFKALVFEFMSNGNLDQWLHPSPAEHYQFKKLSVIQRLNIAIDVASALDYLHHHC-----DTPIAHCDLKPSNVLLDKD 536 (717)
Q Consensus 462 ~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~i~~~i~~~l~~LH~~~-----~~~ivH~dlkp~NIll~~~ 536 (717)
....++||||+++++|.++++. ..+++..+..++.|++.||+|||+.+ .++|+||||||+||+++.+
T Consensus 107 ~~~~~lv~e~~~~g~L~~~l~~--------~~~~~~~~~~i~~~i~~~l~~lH~~~~~~~~~~~ivH~Dikp~Nill~~~ 178 (337)
T 3mdy_A 107 WTQLYLITDYHENGSLYDYLKS--------TTLDAKSMLKLAYSSVSGLCHLHTEIFSTQGKPAIAHRDLKSKNILVKKN 178 (337)
T ss_dssp GCEEEEEECCCTTCBHHHHHHH--------CCBCHHHHHHHHHHHHHHHHHHHSCBCSTTCBCCEECSCCCGGGEEECTT
T ss_pred CCceEEEEeccCCCcHHHHhhc--------cCCCHHHHHHHHHHHHHHHHHHHHhhhhhccCCCEEecccchHHEEECCC
Confidence 2578999999999999999964 35899999999999999999999841 2389999999999999999
Q ss_pred CceEEeeeccchhcccccCCCCCCcceeecccccccccCCCccCCC-CCc------ccchhhHHHHHHHHHhC-------
Q 005045 537 MTAHVGDFGLAKFLFEISDNPSKNQTVSIGLKGSIGYIPPEHMNGQ-VSI------LGDIYSYGILLLEMFTG------- 602 (717)
Q Consensus 537 ~~~kl~Dfg~~~~~~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~-~~~------~sDvwslG~vl~elltg------- 602 (717)
+.+||+|||.+......... .........||+.|+|||++.+. .+. ++|||||||++|||++|
T Consensus 179 ~~~kl~Dfg~a~~~~~~~~~---~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~~~~~~DiwslG~il~el~tg~~~~~~~ 255 (337)
T 3mdy_A 179 GTCCIADLGLAVKFISDTNE---VDIPPNTRVGTKRYMPPEVLDESLNRNHFQSYIMADMYSFGLILWEVARRCVSGGIV 255 (337)
T ss_dssp SCEEECCCTTCEECC------------CCSSCSCGGGCCHHHHTTCCCTTCTHHHHHHHHHHHHHHHHHHHTTBCBTTBC
T ss_pred CCEEEEeCCCceeecccccc---ccCCCCCCccCcceeChhhcccccCCccccCccccchHHHHHHHHHHHhccCccccc
Confidence 99999999999765221111 11112245689999999997654 333 38999999999999999
Q ss_pred ---CCCCCCCCCCchhhhHHHHhcCChhhhhhcCCCCCCCCCCcHHHHHHHHHHHHHHhhhhhhhcchhhhHHHHHHHHH
Q 005045 603 ---KRPTGDMFKDDFSIHMFVSMALPDHVMDILDPSMPLDEENDEEQIEEVIEEKEMMIHIDLEVNTKNKLEECFVSVLR 679 (717)
Q Consensus 603 ---~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 679 (717)
..||................ ....... ..........+++..+.+
T Consensus 256 ~~~~~p~~~~~~~~~~~~~~~~~--------~~~~~~~------------------------~~~~~~~~~~~~~~~l~~ 303 (337)
T 3mdy_A 256 EEYQLPYHDLVPSDPSYEDMREI--------VCIKKLR------------------------PSFPNRWSSDECLRQMGK 303 (337)
T ss_dssp CCCCCTTTTTSCSSCCHHHHHHH--------HTTSCCC------------------------CCCCGGGGGSHHHHHHHH
T ss_pred ccccccHhhhcCCCCchhhhHHH--------HhhhccC------------------------ccccccchhhHHHHHHHH
Confidence 45554432222111111000 0000000 111111233467888999
Q ss_pred HhhccCCCCcCCCCCHHHHHHHHHHHHHHH
Q 005045 680 IGLMCSTTSPRERIAMNVVVNNLKTIRNCF 709 (717)
Q Consensus 680 li~~cl~~~p~~Rps~~eil~~l~~i~~~~ 709 (717)
++.+||+.+|++|||+.||++.|+++.++.
T Consensus 304 li~~~l~~dP~~Rps~~ell~~L~~l~~~~ 333 (337)
T 3mdy_A 304 LMTECWAHNPASRLTALRVKKTLAKMSESQ 333 (337)
T ss_dssp HHHHHSCSSGGGSCCHHHHHHHHHHHHHTT
T ss_pred HHHHhhhhChhhCCCHHHHHHHHHHHHhhc
Confidence 999999999999999999999999988653
No 148
>2yex_A Serine/threonine-protein kinase CHK1; transferase, cell cycle; HET: YEX; 1.30A {Homo sapiens} PDB: 2x8e_A* 2ydk_A* 2ydj_A* 2yer_A* 2ydi_A* 1nvq_A* 1nvr_A* 1nvs_A* 2wmq_A* 2wmr_A* 2wms_A* 2wmt_A* 2wmu_A* 2wmv_A* 2wmw_A* 2wmx_A* 2x8d_A* 2x8i_A* 2xey_A* 2xez_A* ...
Probab=100.00 E-value=2.6e-38 Score=322.20 Aligned_cols=252 Identities=20% Similarity=0.309 Sum_probs=201.4
Q ss_pred ccccccccccCcccccceEEEEeC-CCchhhhHHhHhhh-hhHHHHHHHHHHHHhcCCCCceeEEEEeeccccCCCCceE
Q 005045 388 TDNFSKENLIGTGSFGSVYKGTLG-DGTIVAIKVLKLQQ-QGALKSFIDECNALKSTRHRNILRVITACSSVDLEGNDFK 465 (717)
Q Consensus 388 ~~~y~~~~~ig~g~~g~v~~~~~~-~~~~vavK~~~~~~-~~~~~~~~~e~~~l~~l~h~ni~~~~~~~~~~~~~~~~~~ 465 (717)
.++|++.+.||+|++|.||.|.++ +++.||+|++.... ....+.+.+|+.+++.++||||+++++++. +.+..
T Consensus 6 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~-----~~~~~ 80 (276)
T 2yex_A 6 VEDWDLVQTLGEGAYGEVQLAVNRVTEEAVAVKIVDMKRAVDCPENIKKEICINKMLNHENVVKFYGHRR-----EGNIQ 80 (276)
T ss_dssp HHHEEEEEEEEECSSSEEEEEEETTTCCEEEEEEEEGGGCTTHHHHHHHHHHHHHTCCCTTBCCEEEEEE-----ETTEE
T ss_pred ecceEEEEEeecCCCcEEEEEEECCCCcEEEEEEeeeccchhhhHHHHHHHHHHHhcCCCCceeeeeEEE-----cCCEE
Confidence 468999999999999999999965 78999999986443 334578889999999999999999999854 34588
Q ss_pred EEEEecCCCCChhhhccCCCCCcccccccCHHHHHHHHHHHHHHHHHHHhcCCCCeeecCCCCCCEEeCCCCceEEeeec
Q 005045 466 ALVFEFMSNGNLDQWLHPSPAEHYQFKKLSVIQRLNIAIDVASALDYLHHHCDTPIAHCDLKPSNVLLDKDMTAHVGDFG 545 (717)
Q Consensus 466 ~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~dlkp~NIll~~~~~~kl~Dfg 545 (717)
++||||+++++|.+++... ..+++..+..++.||+.||+|||+. +++||||||+||+++.++.+||+|||
T Consensus 81 ~lv~e~~~~~~L~~~l~~~-------~~~~~~~~~~~~~~i~~~l~~lH~~---~i~H~dl~p~Nil~~~~~~~kl~dfg 150 (276)
T 2yex_A 81 YLFLEYCSGGELFDRIEPD-------IGMPEPDAQRFFHQLMAGVVYLHGI---GITHRDIKPENLLLDERDNLKISDFG 150 (276)
T ss_dssp EEEEECCTTEEGGGGSBTT-------TBCCHHHHHHHHHHHHHHHHHHHHT---TEECSCCSGGGEEECTTCCEEECCCT
T ss_pred EEEEEecCCCcHHHHHhhc-------cCCCHHHHHHHHHHHHHHHHHHHhC---CeeccCCChHHEEEccCCCEEEeeCC
Confidence 9999999999999999754 5689999999999999999999998 99999999999999999999999999
Q ss_pred cchhcccccCCCCCCcceeecccccccccCCCccCCC--CCcccchhhHHHHHHHHHhCCCCCCCCCCCchhhhHHHHhc
Q 005045 546 LAKFLFEISDNPSKNQTVSIGLKGSIGYIPPEHMNGQ--VSILGDIYSYGILLLEMFTGKRPTGDMFKDDFSIHMFVSMA 623 (717)
Q Consensus 546 ~~~~~~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~--~~~~sDvwslG~vl~elltg~~p~~~~~~~~~~~~~~~~~~ 623 (717)
.+........ ........|++.|+|||++.+. .+.++|||||||++|+|++|..||............+....
T Consensus 151 ~~~~~~~~~~-----~~~~~~~~~~~~y~aPE~~~~~~~~~~~~Di~slG~il~~l~~g~~p~~~~~~~~~~~~~~~~~~ 225 (276)
T 2yex_A 151 LATVFRYNNR-----ERLLNKMCGTLPYVAPELLKRREFHAEPVDVWSCGIVLTAMLAGELPWDQPSDSCQEYSDWKEKK 225 (276)
T ss_dssp TCEECEETTE-----ECCBCCCCSCGGGCCGGGGTCSSBCHHHHHHHHHHHHHHHHHHSSCCCSCSCTTSHHHHHHHTTC
T ss_pred CccccCCCcc-----hhcccCCccccCccChHHHhcCCCCCCcchHHHHHHHHHHHHhCCCCCCCCchHHHHHHHhhhcc
Confidence 9876522110 1112335689999999997654 37789999999999999999999976544332222211110
Q ss_pred CChhhhhhcCCCCCCCCCCcHHHHHHHHHHHHHHhhhhhhhcchhhhHHHHHHHHHHhhccCCCCcCCCCCHHHHHH
Q 005045 624 LPDHVMDILDPSMPLDEENDEEQIEEVIEEKEMMIHIDLEVNTKNKLEECFVSVLRIGLMCSTTSPRERIAMNVVVN 700 (717)
Q Consensus 624 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~cl~~~p~~Rps~~eil~ 700 (717)
.... .....+..+.+++.+||+.+|++|||++|+++
T Consensus 226 ------------~~~~-----------------------------~~~~~~~~~~~li~~~l~~~p~~Rps~~~il~ 261 (276)
T 2yex_A 226 ------------TYLN-----------------------------PWKKIDSAPLALLHKILVENPSARITIPDIKK 261 (276)
T ss_dssp ------------TTST-----------------------------TGGGSCHHHHHHHHHHSCSSTTTSCCHHHHTT
T ss_pred ------------cccC-----------------------------chhhcCHHHHHHHHHHCCCCchhCCCHHHHhc
Confidence 0000 01122456788999999999999999999986
No 149
>3is5_A Calcium-dependent protein kinase; CDPK, structural genomics, parasitology, structural genomics consortium, SGC, ATP-binding, nucleotide-binding; HET: ANP; 2.55A {Toxoplasma gondii}
Probab=100.00 E-value=5.3e-39 Score=328.79 Aligned_cols=254 Identities=24% Similarity=0.327 Sum_probs=196.3
Q ss_pred cccccccccccCcccccceEEEEeC-CCchhhhHHhHhhh-hhHHHHHHHHHHHHhcCCCCceeEEEEeeccccCCCCce
Q 005045 387 STDNFSKENLIGTGSFGSVYKGTLG-DGTIVAIKVLKLQQ-QGALKSFIDECNALKSTRHRNILRVITACSSVDLEGNDF 464 (717)
Q Consensus 387 ~~~~y~~~~~ig~g~~g~v~~~~~~-~~~~vavK~~~~~~-~~~~~~~~~e~~~l~~l~h~ni~~~~~~~~~~~~~~~~~ 464 (717)
..++|++.++||+|+||.||+|... +++.+|+|++.... ....+.+.+|++++++++||||+++++++. +...
T Consensus 20 i~~~y~~~~~lg~G~~g~V~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~E~~~l~~l~hp~iv~~~~~~~-----~~~~ 94 (285)
T 3is5_A 20 IDDLFIFKRKLGSGAFGDVHLVEERSSGLERVIKTINKDRSQVPMEQIEAEIEVLKSLDHPNIIKIFEVFE-----DYHN 94 (285)
T ss_dssp HHHHEEEEEEEEECSSCEEEEEEETTTCCEEEEEEEEGGGCCSCHHHHHHHHHHHHTCCCTTBCCEEEEEE-----CSSE
T ss_pred hhhheeecceeccCCCeEEEEEEEccCCceEEEEEeeccccchhHHHHHHHHHHHHhCCCchHHhHHHhee-----cCCe
Confidence 3578999999999999999999965 78899999987553 234578899999999999999999999953 4558
Q ss_pred EEEEEecCCCCChhhhccCCCCCcccccccCHHHHHHHHHHHHHHHHHHHhcCCCCeeecCCCCCCEEe---CCCCceEE
Q 005045 465 KALVFEFMSNGNLDQWLHPSPAEHYQFKKLSVIQRLNIAIDVASALDYLHHHCDTPIAHCDLKPSNVLL---DKDMTAHV 541 (717)
Q Consensus 465 ~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~dlkp~NIll---~~~~~~kl 541 (717)
.++||||+++++|.+++..... ....+++..+..++.||+.||+|||+. +|+||||||+||++ +.++.+||
T Consensus 95 ~~lv~e~~~~~~L~~~l~~~~~---~~~~~~~~~~~~i~~qi~~~L~~LH~~---~ivH~dikp~NIl~~~~~~~~~~kl 168 (285)
T 3is5_A 95 MYIVMETCEGGELLERIVSAQA---RGKALSEGYVAELMKQMMNALAYFHSQ---HVVHKDLKPENILFQDTSPHSPIKI 168 (285)
T ss_dssp EEEEECCCSCCBHHHHHHHHHH---HTCCCCHHHHHHHHHHHHHHHHHHHHT---TCCCCCCSGGGEEESSSSTTCCEEE
T ss_pred EEEEEEeCCCCcHHHHHHhhhh---cccCCCHHHHHHHHHHHHHHHHHHHhC---CEEECCCCHHHEEEecCCCCCCEEE
Confidence 9999999999999998853210 115689999999999999999999998 99999999999999 45678999
Q ss_pred eeeccchhcccccCCCCCCcceeecccccccccCCCccCCCCCcccchhhHHHHHHHHHhCCCCCCCCCCCchhhhHHHH
Q 005045 542 GDFGLAKFLFEISDNPSKNQTVSIGLKGSIGYIPPEHMNGQVSILGDIYSYGILLLEMFTGKRPTGDMFKDDFSIHMFVS 621 (717)
Q Consensus 542 ~Dfg~~~~~~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~sDvwslG~vl~elltg~~p~~~~~~~~~~~~~~~~ 621 (717)
+|||.+..... ........|++.|+|||++.+.++.++|||||||++|+|++|..||........ .....
T Consensus 169 ~Dfg~a~~~~~--------~~~~~~~~~t~~y~aPE~~~~~~~~~~Di~slG~il~~ll~g~~pf~~~~~~~~--~~~~~ 238 (285)
T 3is5_A 169 IDFGLAELFKS--------DEHSTNAAGTALYMAPEVFKRDVTFKCDIWSAGVVMYFLLTGCLPFTGTSLEEV--QQKAT 238 (285)
T ss_dssp CCCCCCCC------------------CTTGGGCCHHHHTTCCCHHHHHHHHHHHHHHHHHSSCSSCCSSHHHH--HHHHH
T ss_pred EeeecceecCC--------cccCcCcccccCcCChHHhccCCCcccCeehHHHHHHHHHhCCCCCCCCCHHHH--Hhhhc
Confidence 99999976521 112234568999999999988899999999999999999999999976432111 11000
Q ss_pred hcCChhhhhhcCCCCCCCCCCcHHHHHHHHHHHHHHhhhhhhhcchhhhHHHHHHHHHHhhccCCCCcCCCCCHHHHHH
Q 005045 622 MALPDHVMDILDPSMPLDEENDEEQIEEVIEEKEMMIHIDLEVNTKNKLEECFVSVLRIGLMCSTTSPRERIAMNVVVN 700 (717)
Q Consensus 622 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~cl~~~p~~Rps~~eil~ 700 (717)
. ..+...... ...+..+.+++.+||+.+|++|||+.|+++
T Consensus 239 ~---------~~~~~~~~~------------------------------~~~~~~~~~li~~~L~~dP~~Rps~~e~l~ 278 (285)
T 3is5_A 239 Y---------KEPNYAVEC------------------------------RPLTPQAVDLLKQMLTKDPERRPSAAQVLH 278 (285)
T ss_dssp H---------CCCCCCC--------------------------------CCCCHHHHHHHHHHTCSCTTTSCCHHHHHT
T ss_pred c---------CCccccccc------------------------------CcCCHHHHHHHHHHccCChhhCcCHHHHhc
Confidence 0 000100000 001445778999999999999999999985
No 150
>3uc3_A Serine/threonine-protein kinase SRK2I; SNRK2, ABA signaling, transferase; 1.90A {Arabidopsis thaliana} PDB: 3zut_A 3zuu_A 3uc4_A 3ujg_A 3udb_A
Probab=100.00 E-value=1.6e-38 Score=336.05 Aligned_cols=254 Identities=22% Similarity=0.261 Sum_probs=189.7
Q ss_pred ccccccccccccCcccccceEEEEeC-CCchhhhHHhHhhhhhHHHHHHHHHHHHhcCCCCceeEEEEeeccccCCCCce
Q 005045 386 KSTDNFSKENLIGTGSFGSVYKGTLG-DGTIVAIKVLKLQQQGALKSFIDECNALKSTRHRNILRVITACSSVDLEGNDF 464 (717)
Q Consensus 386 ~~~~~y~~~~~ig~g~~g~v~~~~~~-~~~~vavK~~~~~~~~~~~~~~~e~~~l~~l~h~ni~~~~~~~~~~~~~~~~~ 464 (717)
...++|++.+.||+|+||.||+|+++ +++.||+|++..... ..+.+.+|+.++++++||||+++++++. ..+.
T Consensus 17 ~~~~~y~~~~~lG~G~~g~V~~~~~~~~~~~vavK~~~~~~~-~~~~~~~E~~~l~~l~hpniv~~~~~~~-----~~~~ 90 (361)
T 3uc3_A 17 HDSDRYDFVKDIGSGNFGVARLMRDKLTKELVAVKYIERGAA-IDENVQREIINHRSLRHPNIVRFKEVIL-----TPTH 90 (361)
T ss_dssp CCTTTEEEEEEESSSTTSSEEEEEETTTCCEEEEEEEESSTT-SCHHHHHHHHHHHHCCCTTBCCEEEEEE-----CSSE
T ss_pred CCCCcEEEEEEeccCCCEEEEEEEECCCCcEEEEEEEecCcc-ccHHHHHHHHHHHhCCCCCCCcEEEEEe-----eCCE
Confidence 45679999999999999999999976 899999999864332 2366789999999999999999999954 4558
Q ss_pred EEEEEecCCCCChhhhccCCCCCcccccccCHHHHHHHHHHHHHHHHHHHhcCCCCeeecCCCCCCEEeCCCCc--eEEe
Q 005045 465 KALVFEFMSNGNLDQWLHPSPAEHYQFKKLSVIQRLNIAIDVASALDYLHHHCDTPIAHCDLKPSNVLLDKDMT--AHVG 542 (717)
Q Consensus 465 ~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~dlkp~NIll~~~~~--~kl~ 542 (717)
.++||||+++++|.+++... +.+++..+..++.||+.||+|||+. ||+||||||+||+++.++. +||+
T Consensus 91 ~~lv~e~~~~~~L~~~l~~~-------~~~~~~~~~~i~~ql~~~L~~LH~~---~ivH~Dlkp~Nill~~~~~~~~kl~ 160 (361)
T 3uc3_A 91 LAIIMEYASGGELYERICNA-------GRFSEDEARFFFQQLLSGVSYCHSM---QICHRDLKLENTLLDGSPAPRLKIC 160 (361)
T ss_dssp EEEEEECCCSCBHHHHHHHH-------SSCCHHHHHHHHHHHHHHHHHHHHT---TCCSCCCCGGGEEECSSSSCCEEEC
T ss_pred EEEEEEeCCCCCHHHHHHhc-------CCCCHHHHHHHHHHHHHHHHHHHHC---CcccCCCCHHHEEEcCCCCceEEEe
Confidence 99999999999999998643 5689999999999999999999998 9999999999999987765 9999
Q ss_pred eeccchhcccccCCCCCCcceeecccccccccCCCccCC-CCC-cccchhhHHHHHHHHHhCCCCCCCCCCCchhhhHHH
Q 005045 543 DFGLAKFLFEISDNPSKNQTVSIGLKGSIGYIPPEHMNG-QVS-ILGDIYSYGILLLEMFTGKRPTGDMFKDDFSIHMFV 620 (717)
Q Consensus 543 Dfg~~~~~~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~-~~~-~~sDvwslG~vl~elltg~~p~~~~~~~~~~~~~~~ 620 (717)
|||.++... .........||+.|+|||++.+ .++ .++|||||||++|+|++|..||.......... ..
T Consensus 161 Dfg~a~~~~--------~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~DiwslG~il~ell~g~~Pf~~~~~~~~~~-~~- 230 (361)
T 3uc3_A 161 DFGYSKSSV--------LHSQPKSTVGTPAYIAPEVLLRQEYDGKIADVWSCGVTLYVMLVGAYPFEDPEEPRDYR-KT- 230 (361)
T ss_dssp CCCCC-----------------------CTTSCHHHHHCSSCCHHHHHHHHHHHHHHHHHHSSCSCC----CCCHH-HH-
T ss_pred ecCcccccc--------ccCCCCCCcCCCCcCChhhhcCCCCCCCeeeeehhHHHHHHHHhCCCCCCCCccHHHHH-HH-
Confidence 999987431 1112234569999999999654 454 44899999999999999999997653322111 11
Q ss_pred HhcCChhhhhhcCCCCCCCCCCcHHHHHHHHHHHHHHhhhhhhhcchhhhHHHHHHHHHHhhccCCCCcCCCCCHHHHHH
Q 005045 621 SMALPDHVMDILDPSMPLDEENDEEQIEEVIEEKEMMIHIDLEVNTKNKLEECFVSVLRIGLMCSTTSPRERIAMNVVVN 700 (717)
Q Consensus 621 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~cl~~~p~~Rps~~eil~ 700 (717)
+..+........ ....++..+.+++.+||+.+|++|||+.|+++
T Consensus 231 -------~~~~~~~~~~~~-----------------------------~~~~~s~~~~~li~~~L~~dP~~Rps~~ell~ 274 (361)
T 3uc3_A 231 -------IQRILSVKYSIP-----------------------------DDIRISPECCHLISRIFVADPATRISIPEIKT 274 (361)
T ss_dssp -------HHHHHTTCCCCC-----------------------------TTSCCCHHHHHHHHHHSCSCTTTSCCHHHHHT
T ss_pred -------HHHHhcCCCCCC-----------------------------CcCCCCHHHHHHHHHHccCChhHCcCHHHHHh
Confidence 111111111100 00112456788999999999999999999986
Q ss_pred H
Q 005045 701 N 701 (717)
Q Consensus 701 ~ 701 (717)
.
T Consensus 275 h 275 (361)
T 3uc3_A 275 H 275 (361)
T ss_dssp S
T ss_pred C
Confidence 4
No 151
>3cok_A Serine/threonine-protein kinase PLK4; POLO-like kinase 4, SAK, STK18, PSI, structural genomics, protein structure initiative; HET: ANP; 2.25A {Homo sapiens}
Probab=100.00 E-value=2.5e-38 Score=322.67 Aligned_cols=250 Identities=24% Similarity=0.401 Sum_probs=182.6
Q ss_pred ccccccccccccCcccccceEEEEe-CCCchhhhHHhHhhh---hhHHHHHHHHHHHHhcCCCCceeEEEEeeccccCCC
Q 005045 386 KSTDNFSKENLIGTGSFGSVYKGTL-GDGTIVAIKVLKLQQ---QGALKSFIDECNALKSTRHRNILRVITACSSVDLEG 461 (717)
Q Consensus 386 ~~~~~y~~~~~ig~g~~g~v~~~~~-~~~~~vavK~~~~~~---~~~~~~~~~e~~~l~~l~h~ni~~~~~~~~~~~~~~ 461 (717)
...++|++.+.||+|+||.||+|.+ .+|+.||+|++.... ....+.+.+|++++++++||||+++++++. +
T Consensus 8 ~~~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~-----~ 82 (278)
T 3cok_A 8 EKIEDFKVGNLLGKGSFAGVYRAESIHTGLEVAIKMIDKKAMYKAGMVQRVQNEVKIHCQLKHPSILELYNYFE-----D 82 (278)
T ss_dssp SSGGGEEEEEEEEECSSEEEEEEEETTTCCEEEEEEEEHHHHHHTTCHHHHHHHHHHHTTBCCTTBCCEEEEEE-----C
T ss_pred cccccceeeeeecCCCceEEEEEEEccCCceEEEEEeehhhhhhhhHHHHHHHHHHHHHhCCCCCeEeEEEEEc-----c
Confidence 3457899999999999999999996 489999999986442 233577899999999999999999999953 4
Q ss_pred CceEEEEEecCCCCChhhhccCCCCCcccccccCHHHHHHHHHHHHHHHHHHHhcCCCCeeecCCCCCCEEeCCCCceEE
Q 005045 462 NDFKALVFEFMSNGNLDQWLHPSPAEHYQFKKLSVIQRLNIAIDVASALDYLHHHCDTPIAHCDLKPSNVLLDKDMTAHV 541 (717)
Q Consensus 462 ~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~dlkp~NIll~~~~~~kl 541 (717)
.+..++||||+++++|.+++.... ..+++..+..++.|++.||+|||+. +++||||||+||+++.++.+||
T Consensus 83 ~~~~~lv~e~~~~~~L~~~l~~~~------~~~~~~~~~~~~~qi~~~l~~lH~~---~i~H~dl~p~Nili~~~~~~kl 153 (278)
T 3cok_A 83 SNYVYLVLEMCHNGEMNRYLKNRV------KPFSENEARHFMHQIITGMLYLHSH---GILHRDLTLSNLLLTRNMNIKI 153 (278)
T ss_dssp SSEEEEEEECCTTEEHHHHHHTCS------SCCCHHHHHHHHHHHHHHHHHHHHT---TEECSSCCGGGEEECTTCCEEE
T ss_pred CCeEEEEEecCCCCcHHHHHhhcc------CCCCHHHHHHHHHHHHHHHHHHHHC---CeecCCCCHHHEEEcCCCCEEE
Confidence 568999999999999999987543 5689999999999999999999998 9999999999999999999999
Q ss_pred eeeccchhcccccCCCCCCcceeecccccccccCCCccCC-CCCcccchhhHHHHHHHHHhCCCCCCCCCCCchhhhHHH
Q 005045 542 GDFGLAKFLFEISDNPSKNQTVSIGLKGSIGYIPPEHMNG-QVSILGDIYSYGILLLEMFTGKRPTGDMFKDDFSIHMFV 620 (717)
Q Consensus 542 ~Dfg~~~~~~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~-~~~~~sDvwslG~vl~elltg~~p~~~~~~~~~~~~~~~ 620 (717)
+|||.+...... ........|++.|+|||++.+ .++.++|||||||++|+|++|..||........
T Consensus 154 ~dfg~~~~~~~~-------~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~g~~p~~~~~~~~~------ 220 (278)
T 3cok_A 154 ADFGLATQLKMP-------HEKHYTLCGTPNYISPEIATRSAHGLESDVWSLGCMFYTLLIGRPPFDTDTVKNT------ 220 (278)
T ss_dssp CCCTTCEECC-----------------------------------CTHHHHHHHHHHHHHHSSCSSCCCSCC--------
T ss_pred EeecceeeccCC-------CCcceeccCCCCcCCcchhcCCCCCchhhHHHHHHHHHHHHhCCCCCCChhHHHH------
Confidence 999998765211 111223568999999999765 478999999999999999999999975432211
Q ss_pred HhcCChhhhhhcCCCCCCCCCCcHHHHHHHHHHHHHHhhhhhhhcchhhhHHHHHHHHHHhhccCCCCcCCCCCHHHHHH
Q 005045 621 SMALPDHVMDILDPSMPLDEENDEEQIEEVIEEKEMMIHIDLEVNTKNKLEECFVSVLRIGLMCSTTSPRERIAMNVVVN 700 (717)
Q Consensus 621 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~cl~~~p~~Rps~~eil~ 700 (717)
........... +..++..+.+++.+||+.+|++|||++|+++
T Consensus 221 -------~~~~~~~~~~~-------------------------------~~~~~~~~~~li~~~l~~dp~~Rps~~~~l~ 262 (278)
T 3cok_A 221 -------LNKVVLADYEM-------------------------------PSFLSIEAKDLIHQLLRRNPADRLSLSSVLD 262 (278)
T ss_dssp ----------CCSSCCCC-------------------------------CTTSCHHHHHHHHHHSCSSGGGSCCHHHHTT
T ss_pred -------HHHHhhcccCC-------------------------------ccccCHHHHHHHHHHcccCHhhCCCHHHHhc
Confidence 00111111000 0112456788999999999999999999986
No 152
>2eue_A Carbon catabolite derepressing protein kinase; kinase domain; 2.20A {Saccharomyces cerevisiae} PDB: 3fam_A 3hyh_A 3dae_A 2fh9_A 3mn3_A
Probab=100.00 E-value=9.8e-39 Score=325.15 Aligned_cols=246 Identities=23% Similarity=0.349 Sum_probs=178.1
Q ss_pred ccccccccccCcccccceEEEEeC-CCchhhhHHhHhh---hhhHHHHHHHHHHHHhcCCCCceeEEEEeeccccCCCCc
Q 005045 388 TDNFSKENLIGTGSFGSVYKGTLG-DGTIVAIKVLKLQ---QQGALKSFIDECNALKSTRHRNILRVITACSSVDLEGND 463 (717)
Q Consensus 388 ~~~y~~~~~ig~g~~g~v~~~~~~-~~~~vavK~~~~~---~~~~~~~~~~e~~~l~~l~h~ni~~~~~~~~~~~~~~~~ 463 (717)
.++|++.+.||+|++|.||+|++. +++.||+|++... .....+.+.+|+++++.++||||+++++++. +.+
T Consensus 12 ~~~y~i~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~-----~~~ 86 (275)
T 2eue_A 12 IGNYQIVKTLGEGSFAKVKLAYHTTTGQKVALKIINKKVLAKSDMQGRIEREISYLRLLRHPHIIKLYDVIK-----SKD 86 (275)
T ss_dssp CCCBCCCC---------EEEEECTTTCCEEEEEEECSCC-----CHHHHHHHHHHHHHCCCTTBCCEEEEEE-----CSS
T ss_pred ccceEEEEEEEcCCCEEEEEEEECCCCCEEEEEEEEhhhcchHHHHHHHHHHHHHHHhCCCCCeEEEEEEEe-----cCC
Confidence 468999999999999999999964 7899999998643 2334567889999999999999999999954 445
Q ss_pred eEEEEEecCCCCChhhhccCCCCCcccccccCHHHHHHHHHHHHHHHHHHHhcCCCCeeecCCCCCCEEeCCCCceEEee
Q 005045 464 FKALVFEFMSNGNLDQWLHPSPAEHYQFKKLSVIQRLNIAIDVASALDYLHHHCDTPIAHCDLKPSNVLLDKDMTAHVGD 543 (717)
Q Consensus 464 ~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~dlkp~NIll~~~~~~kl~D 543 (717)
..++||||+ ++++.+++... ..+++..+..++.|++.|++|||+. |++||||||+||+++.++.+||+|
T Consensus 87 ~~~lv~e~~-~~~l~~~~~~~-------~~~~~~~~~~~~~~i~~~l~~LH~~---~i~H~dikp~Nil~~~~~~~kl~D 155 (275)
T 2eue_A 87 EIIMVIEYA-GNELFDYIVQR-------DKMSEQEARRFFQQIISAVEYCHRH---KIVHRDLKPENLLLDEHLNVKIAD 155 (275)
T ss_dssp CEEEEEECC-CEEHHHHHHTS-------SSCCHHHHHHHHHHHHHHHHHHHHT---TCCCCCCSGGGEEECTTSCEEECC
T ss_pred eEEEEehhc-CCcHHHHHHhc-------CCCCHHHHHHHHHHHHHHHHHHHHC---CCeeccCChHhEEECCCCCEEEee
Confidence 899999999 67888887654 5689999999999999999999998 999999999999999999999999
Q ss_pred eccchhcccccCCCCCCcceeecccccccccCCCccCCC--CCcccchhhHHHHHHHHHhCCCCCCCCCCCchhhhHHHH
Q 005045 544 FGLAKFLFEISDNPSKNQTVSIGLKGSIGYIPPEHMNGQ--VSILGDIYSYGILLLEMFTGKRPTGDMFKDDFSIHMFVS 621 (717)
Q Consensus 544 fg~~~~~~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~--~~~~sDvwslG~vl~elltg~~p~~~~~~~~~~~~~~~~ 621 (717)
||.+..... ........|++.|+|||++.+. .+.++|||||||++|+|++|+.||...... .......
T Consensus 156 fg~~~~~~~--------~~~~~~~~~t~~y~aPE~~~~~~~~~~~~Di~slG~il~~l~~g~~pf~~~~~~--~~~~~~~ 225 (275)
T 2eue_A 156 FGLSNIMTD--------GNFLKTSCGSPNYAAPEVISGKLYAGPEVDVWSCGVILYVMLCRRLPFDDESIP--VLFKNIS 225 (275)
T ss_dssp SSCC-----------------------CTTCCHHHHCC-----THHHHHHHHHHHHHHHHSSCSSCCSSHH--HHHHHHH
T ss_pred cccceeccC--------cccccCCCCCcCcCCceeeeCCCCCCcccchHHHHHHHHHHHhCCCCCCCCCHH--HHHHHHH
Confidence 999976521 1112334589999999997665 378999999999999999999999653211 1100000
Q ss_pred hcCChhhhhhcCCCCCCCCCCcHHHHHHHHHHHHHHhhhhhhhcchhhhHHHHHHHHHHhhccCCCCcCCCCCHHHHHHH
Q 005045 622 MALPDHVMDILDPSMPLDEENDEEQIEEVIEEKEMMIHIDLEVNTKNKLEECFVSVLRIGLMCSTTSPRERIAMNVVVNN 701 (717)
Q Consensus 622 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~cl~~~p~~Rps~~eil~~ 701 (717)
. .... .+..++..+.+++.+||+.+|++|||++|+++.
T Consensus 226 ~-----------~~~~-------------------------------~~~~~~~~~~~li~~~l~~dP~~Rps~~e~l~h 263 (275)
T 2eue_A 226 N-----------GVYT-------------------------------LPKFLSPGAAGLIKRMLIVNPLNRISIHEIMQD 263 (275)
T ss_dssp H-----------TCCC-------------------------------CCTTSCHHHHHHHHHHSCSSGGGSCCHHHHTTC
T ss_pred h-----------CCCC-------------------------------CCccCCHHHHHHHHHHhhcCHhHCCCHHHHhhC
Confidence 0 0000 001124567889999999999999999999863
No 153
>2w1i_A JAK2; chromosomal rearrangement, nucleotide-binding, tyrosine-protein kinase, proto-oncogene, phosphoprotein, disease mutation, SH2 domain; HET: PTR L0I; 2.60A {Homo sapiens}
Probab=100.00 E-value=5.4e-39 Score=335.51 Aligned_cols=281 Identities=23% Similarity=0.371 Sum_probs=209.5
Q ss_pred cccccccccccCcccccceEEEEe-----CCCchhhhHHhHhhhhhHHHHHHHHHHHHhcCCCCceeEEEEeeccccCCC
Q 005045 387 STDNFSKENLIGTGSFGSVYKGTL-----GDGTIVAIKVLKLQQQGALKSFIDECNALKSTRHRNILRVITACSSVDLEG 461 (717)
Q Consensus 387 ~~~~y~~~~~ig~g~~g~v~~~~~-----~~~~~vavK~~~~~~~~~~~~~~~e~~~l~~l~h~ni~~~~~~~~~~~~~~ 461 (717)
..++|++.+.||+|++|.||.|++ .+++.||+|++........+.+.+|++++++++||||+++++++... .
T Consensus 39 ~~~~y~~~~~lg~G~~g~V~~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~---~ 115 (326)
T 2w1i_A 39 EERHLKFLQQLGKGNFGSVEMCRYDPLQDNTGEVVAVKKLQHSTEEHLRDFEREIEILKSLQHDNIVKYKGVCYSA---G 115 (326)
T ss_dssp CGGGEEEEEEEECCSSEEEEEEEECTTSSSCCEEEEEEEESSCCSHHHHHHHHHHHHHHTCCCTTBCCEEEEECC-----
T ss_pred CHHHceeeeeeccCCCeEEEEEEeccccCCCceEEEEEEeccCCHHHHHHHHHHHHHHHhCCCCCeeeEEEEEEec---C
Confidence 467899999999999999999983 37889999998876666678899999999999999999999986432 2
Q ss_pred CceEEEEEecCCCCChhhhccCCCCCcccccccCHHHHHHHHHHHHHHHHHHHhcCCCCeeecCCCCCCEEeCCCCceEE
Q 005045 462 NDFKALVFEFMSNGNLDQWLHPSPAEHYQFKKLSVIQRLNIAIDVASALDYLHHHCDTPIAHCDLKPSNVLLDKDMTAHV 541 (717)
Q Consensus 462 ~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~dlkp~NIll~~~~~~kl 541 (717)
....++||||+++++|.+++.... ..+++..+..++.||+.||+|||+. +++||||||+||+++.++.+||
T Consensus 116 ~~~~~lv~e~~~~~~L~~~l~~~~------~~~~~~~~~~i~~qi~~aL~~LH~~---~ivH~dikp~NIli~~~~~~kL 186 (326)
T 2w1i_A 116 RRNLKLIMEYLPYGSLRDYLQKHK------ERIDHIKLLQYTSQICKGMEYLGTK---RYIHRDLATRNILVENENRVKI 186 (326)
T ss_dssp --CCEEEECCCTTCBHHHHHHHST------TSSCHHHHHHHHHHHHHHHHHHHHT---TEECSCCCGGGEEEEETTEEEE
T ss_pred CCceEEEEECCCCCCHHHHHHhcc------cCCCHHHHHHHHHHHHHHHHHHHhC---CEeccCCCcceEEEcCCCcEEE
Confidence 346899999999999999997542 4589999999999999999999998 9999999999999999999999
Q ss_pred eeeccchhcccccCCCCCCcceeecccccccccCCCccCC-CCCcccchhhHHHHHHHHHhCCCCCCCCCCCchhhhHHH
Q 005045 542 GDFGLAKFLFEISDNPSKNQTVSIGLKGSIGYIPPEHMNG-QVSILGDIYSYGILLLEMFTGKRPTGDMFKDDFSIHMFV 620 (717)
Q Consensus 542 ~Dfg~~~~~~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~-~~~~~sDvwslG~vl~elltg~~p~~~~~~~~~~~~~~~ 620 (717)
+|||.+....... ..........++..|+|||++.+ .++.++|||||||++|+|++|..||..... ......
T Consensus 187 ~Dfg~~~~~~~~~----~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~el~tg~~~~~~~~~---~~~~~~ 259 (326)
T 2w1i_A 187 GDFGLTKVLPQDK----EYYKVKEPGESPIFWYAPESLTESKFSVASDVWSFGVVLYELFTYIEKSKSPPA---EFMRMI 259 (326)
T ss_dssp CCCTTCEECCSSC----SEEECSSCCSCCGGGCCHHHHHHCEEEHHHHHHHHHHHHHHHHHTTCGGGSHHH---HHHHHH
T ss_pred ecCcchhhccccc----cccccccCCCCceeEECchhhcCCCCCchhhHHHHHHHHHHHHhcCCCCCCCHH---HHHHhh
Confidence 9999998652111 10111223446778999999654 478999999999999999999999753210 000000
Q ss_pred HhcCChhhhhhcCCCCCCCCCCcHHHHHHHHHHHHHHhhhhhhhcchhhhHHHHHHHHHHhhccCCCCcCCCCCHHHHHH
Q 005045 621 SMALPDHVMDILDPSMPLDEENDEEQIEEVIEEKEMMIHIDLEVNTKNKLEECFVSVLRIGLMCSTTSPRERIAMNVVVN 700 (717)
Q Consensus 621 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~cl~~~p~~Rps~~eil~ 700 (717)
..... ......++....... ...+.+..++..+.+++.+||+.+|++|||+.||++
T Consensus 260 ~~~~~-----------------~~~~~~~~~~~~~~~-------~~~~~~~~~~~~l~~li~~cl~~dP~~Rps~~el~~ 315 (326)
T 2w1i_A 260 GNDKQ-----------------GQMIVFHLIELLKNN-------GRLPRPDGCPDEIYMIMTECWNNNVNQRPSFRDLAL 315 (326)
T ss_dssp CTTCC-----------------THHHHHHHHHHHHTT-------CCCCCCTTCCHHHHHHHHHHSCSSGGGSCCHHHHHH
T ss_pred ccccc-----------------hhhhHHHHHHHhhcC-------CCCCCCCcccHHHHHHHHHHcCCChhhCcCHHHHHH
Confidence 00000 000000000000000 000112334677899999999999999999999999
Q ss_pred HHHHHHHHHH
Q 005045 701 NLKTIRNCFL 710 (717)
Q Consensus 701 ~l~~i~~~~~ 710 (717)
.|+++++++.
T Consensus 316 ~L~~l~~~l~ 325 (326)
T 2w1i_A 316 RVDQIRDQMA 325 (326)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHhc
Confidence 9999998753
No 154
>3cc6_A Protein tyrosine kinase 2 beta; focal adhesion kinase, structural genomics, structural genom consortium, SGC, ATP-binding, membrane; 1.60A {Homo sapiens} PDB: 3fzs_A* 3et7_A 3fzo_A* 3fzr_A* 3fzp_A* 3fzt_A* 3h3c_A*
Probab=100.00 E-value=1.2e-38 Score=325.55 Aligned_cols=264 Identities=20% Similarity=0.353 Sum_probs=205.3
Q ss_pred cccccccccccccccCcccccceEEEEeC----CCchhhhHHhHhh-hhhHHHHHHHHHHHHhcCCCCceeEEEEeeccc
Q 005045 383 DISKSTDNFSKENLIGTGSFGSVYKGTLG----DGTIVAIKVLKLQ-QQGALKSFIDECNALKSTRHRNILRVITACSSV 457 (717)
Q Consensus 383 ~~~~~~~~y~~~~~ig~g~~g~v~~~~~~----~~~~vavK~~~~~-~~~~~~~~~~e~~~l~~l~h~ni~~~~~~~~~~ 457 (717)
.+....++|++.+.||+|+||.||+|.+. .+..||+|.+... .....+.+.+|++++++++||||+++++++..
T Consensus 6 ~~~~~~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~- 84 (281)
T 3cc6_A 6 QYGIAREDVVLNRILGEGFFGEVYEGVYTNHKGEKINVAVKTCKKDCTLDNKEKFMSEAVIMKNLDHPHIVKLIGIIEE- 84 (281)
T ss_dssp CCSCCGGGEEEEEEEEECSSSEEEEEEEECTTCCEEEEEEEECCTTSCHHHHHHHHHHHHHHHHHCCTTBCCEEEEECS-
T ss_pred cceecccceEEEEEEEecCCeeEEEeEEcCCCCCcceEEEEecccccCchHHHHHHHHHHHHHhCCCCCcceEEEEEcC-
Confidence 44567789999999999999999999853 2345999998754 23456788999999999999999999998532
Q ss_pred cCCCCceEEEEEecCCCCChhhhccCCCCCcccccccCHHHHHHHHHHHHHHHHHHHhcCCCCeeecCCCCCCEEeCCCC
Q 005045 458 DLEGNDFKALVFEFMSNGNLDQWLHPSPAEHYQFKKLSVIQRLNIAIDVASALDYLHHHCDTPIAHCDLKPSNVLLDKDM 537 (717)
Q Consensus 458 ~~~~~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~dlkp~NIll~~~~ 537 (717)
+..++||||+++++|.+++.... ..+++..+..++.||+.||+|||+. +++||||||+||+++.++
T Consensus 85 -----~~~~~v~e~~~~~~L~~~l~~~~------~~~~~~~~~~~~~~i~~~l~~lH~~---~i~H~dlkp~Nil~~~~~ 150 (281)
T 3cc6_A 85 -----EPTWIIMELYPYGELGHYLERNK------NSLKVLTLVLYSLQICKAMAYLESI---NCVHRDIAVRNILVASPE 150 (281)
T ss_dssp -----SSCEEEEECCTTCBHHHHHHHHT------TTCCHHHHHHHHHHHHHHHHHHHHT---TCCCCCCSGGGEEEEETT
T ss_pred -----CCCEEEEecCCCCCHHHHHHhcc------ccCCHHHHHHHHHHHHHHHHHHHHC---CcccCCCccceEEECCCC
Confidence 24689999999999999996432 4589999999999999999999998 999999999999999999
Q ss_pred ceEEeeeccchhcccccCCCCCCcceeecccccccccCCCccC-CCCCcccchhhHHHHHHHHHh-CCCCCCCCCCCchh
Q 005045 538 TAHVGDFGLAKFLFEISDNPSKNQTVSIGLKGSIGYIPPEHMN-GQVSILGDIYSYGILLLEMFT-GKRPTGDMFKDDFS 615 (717)
Q Consensus 538 ~~kl~Dfg~~~~~~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~-~~~~~~sDvwslG~vl~ellt-g~~p~~~~~~~~~~ 615 (717)
.+||+|||.+....... ........+++.|+|||++. +.++.++|||||||++|+|++ |..||......+.
T Consensus 151 ~~kl~Dfg~~~~~~~~~------~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~llt~g~~p~~~~~~~~~- 223 (281)
T 3cc6_A 151 CVKLGDFGLSRYIEDED------YYKASVTRLPIKWMSPESINFRRFTTASDVWMFAVCMWEILSFGKQPFFWLENKDV- 223 (281)
T ss_dssp EEEECCCCGGGCC---------------CCCCCGGGCCHHHHHHCCCCHHHHHHHHHHHHHHHHTTTCCTTTTSCGGGH-
T ss_pred cEEeCccCCCccccccc------ccccccCCCCcceeCchhhccCCCCchhccHHHHHHHHHHHhCCCCCcccCChHHH-
Confidence 99999999998652211 11122345678899999965 458999999999999999998 9999975433221
Q ss_pred hhHHHHhcCChhhhhhcCCCCCCCCCCcHHHHHHHHHHHHHHhhhhhhhcchhhhHHHHHHHHHHhhccCCCCcCCCCCH
Q 005045 616 IHMFVSMALPDHVMDILDPSMPLDEENDEEQIEEVIEEKEMMIHIDLEVNTKNKLEECFVSVLRIGLMCSTTSPRERIAM 695 (717)
Q Consensus 616 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~cl~~~p~~Rps~ 695 (717)
....... .... .+..++..+.+++.+||+.+|++|||+
T Consensus 224 -~~~~~~~--------~~~~---------------------------------~~~~~~~~l~~li~~~l~~~p~~Rps~ 261 (281)
T 3cc6_A 224 -IGVLEKG--------DRLP---------------------------------KPDLCPPVLYTLMTRCWDYDPSDRPRF 261 (281)
T ss_dssp -HHHHHHT--------CCCC---------------------------------CCTTCCHHHHHHHHHHTCSSGGGSCCH
T ss_pred -HHHHhcC--------CCCC---------------------------------CCCCCCHHHHHHHHHHccCCchhCcCH
Confidence 1111100 0000 011125568899999999999999999
Q ss_pred HHHHHHHHHHHHHHH
Q 005045 696 NVVVNNLKTIRNCFL 710 (717)
Q Consensus 696 ~eil~~l~~i~~~~~ 710 (717)
.|+++.|+.+.+...
T Consensus 262 ~ell~~L~~~~~~~~ 276 (281)
T 3cc6_A 262 TELVCSLSDVYQMEK 276 (281)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhh
Confidence 999999999986543
No 155
>4fvq_A Tyrosine-protein kinase JAK2; janus protein kinase, pseudokinase, ATP binding, phosphoryla transferase; HET: ATP; 1.75A {Homo sapiens} PDB: 4fvp_A* 4fvr_A*
Probab=100.00 E-value=2.9e-39 Score=331.65 Aligned_cols=253 Identities=21% Similarity=0.392 Sum_probs=199.6
Q ss_pred cccccccccccCcccccceEEEEeC-CC-------chhhhHHhHhhhhhHHHHHHHHHHHHhcCCCCceeEEEEeecccc
Q 005045 387 STDNFSKENLIGTGSFGSVYKGTLG-DG-------TIVAIKVLKLQQQGALKSFIDECNALKSTRHRNILRVITACSSVD 458 (717)
Q Consensus 387 ~~~~y~~~~~ig~g~~g~v~~~~~~-~~-------~~vavK~~~~~~~~~~~~~~~e~~~l~~l~h~ni~~~~~~~~~~~ 458 (717)
..++|++.+.||+|+||.||+|.+. ++ +.||+|++........+.+.+|++++++++||||+++++++.
T Consensus 6 ~~~~y~~~~~lg~G~~g~V~~~~~~~~~~~~~~~~~~va~K~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~--- 82 (289)
T 4fvq_A 6 RNEDLIFNESLGQGTFTKIFKGVRREVGDYGQLHETEVLLKVLDKAHRNYSESFFEAASMMSKLSHKHLVLNYGVCV--- 82 (289)
T ss_dssp CGGGEEEEEEEEEETTEEEEEEEEEEECGGGCEEEEEEEEEEECGGGGGGHHHHHHHHHHHHTSCCTTBCCEEEEEC---
T ss_pred chhHeeeeeeeccCCCceEEEEEEecccccccccchhhhhhhcccccHHHHHHHHHHHHHHHhCCCCCEeEEEEEEE---
Confidence 4678999999999999999999855 34 469999987666666788999999999999999999999954
Q ss_pred CCCCceEEEEEecCCCCChhhhccCCCCCcccccccCHHHHHHHHHHHHHHHHHHHhcCCCCeeecCCCCCCEEeCCCCc
Q 005045 459 LEGNDFKALVFEFMSNGNLDQWLHPSPAEHYQFKKLSVIQRLNIAIDVASALDYLHHHCDTPIAHCDLKPSNVLLDKDMT 538 (717)
Q Consensus 459 ~~~~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~dlkp~NIll~~~~~ 538 (717)
.++..++||||+++++|.+++.... ..+++..+..++.||+.||+|||+. +|+||||||+||+++.++.
T Consensus 83 --~~~~~~lv~e~~~~~~L~~~l~~~~------~~~~~~~~~~i~~qi~~~L~~LH~~---~ivH~Dlkp~NIll~~~~~ 151 (289)
T 4fvq_A 83 --CGDENILVQEFVKFGSLDTYLKKNK------NCINILWKLEVAKQLAAAMHFLEEN---TLIHGNVCAKNILLIREED 151 (289)
T ss_dssp --CTTCCEEEEECCTTCBHHHHHHHTG------GGCCHHHHHHHHHHHHHHHHHHHHT---TCCCCCCCGGGEEEEECCB
T ss_pred --eCCCCEEEEECCCCCCHHHHHHhCC------CCCCHHHHHHHHHHHHHHHHHHhhC---CeECCCcCcceEEEecCCc
Confidence 4457899999999999999997542 4489999999999999999999998 9999999999999998886
Q ss_pred --------eEEeeeccchhcccccCCCCCCcceeecccccccccCCCccCC--CCCcccchhhHHHHHHHHHhCCCCCCC
Q 005045 539 --------AHVGDFGLAKFLFEISDNPSKNQTVSIGLKGSIGYIPPEHMNG--QVSILGDIYSYGILLLEMFTGKRPTGD 608 (717)
Q Consensus 539 --------~kl~Dfg~~~~~~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~--~~~~~sDvwslG~vl~elltg~~p~~~ 608 (717)
+||+|||.+.... ......++..|+|||++.+ .++.++|||||||++|+|++|..|+..
T Consensus 152 ~~~~~~~~~kl~Dfg~~~~~~-----------~~~~~~~~~~y~aPE~~~~~~~~~~~~DiwslG~il~el~~g~~~~~~ 220 (289)
T 4fvq_A 152 RKTGNPPFIKLSDPGISITVL-----------PKDILQERIPWVPPECIENPKNLNLATDKWSFGTTLWEICSGGDKPLS 220 (289)
T ss_dssp GGGTBCCEEEECCCCSCTTTS-----------CHHHHHHTTTTSCHHHHHCGGGCCHHHHHHHHHHHHHHHHTTTCCTTT
T ss_pred ccccccceeeeccCccccccc-----------CccccCCcCcccCHHHhCCCCCCCchhHHHHHHHHHHHHHcCCCCCcc
Confidence 9999999987541 1123457889999999764 489999999999999999996555433
Q ss_pred CCCCchhhhHHHHhcCChhhhhhcCCCCCCCCCCcHHHHHHHHHHHHHHhhhhhhhcchhhhHHHHHHHHHHhhccCCCC
Q 005045 609 MFKDDFSIHMFVSMALPDHVMDILDPSMPLDEENDEEQIEEVIEEKEMMIHIDLEVNTKNKLEECFVSVLRIGLMCSTTS 688 (717)
Q Consensus 609 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~cl~~~ 688 (717)
........ ..... ....+. .++..+.+++.+||+.+
T Consensus 221 ~~~~~~~~-~~~~~----------~~~~~~---------------------------------~~~~~l~~li~~~l~~d 256 (289)
T 4fvq_A 221 ALDSQRKL-QFYED----------RHQLPA---------------------------------PKAAELANLINNCMDYE 256 (289)
T ss_dssp TSCHHHHH-HHHHT----------TCCCCC---------------------------------CSSCTTHHHHHHHSCSS
T ss_pred ccchHHHH-HHhhc----------cCCCCC---------------------------------CCCHHHHHHHHHHcCCC
Confidence 22111111 00000 000000 01334678999999999
Q ss_pred cCCCCCHHHHHHHHHHHHHH
Q 005045 689 PRERIAMNVVVNNLKTIRNC 708 (717)
Q Consensus 689 p~~Rps~~eil~~l~~i~~~ 708 (717)
|++|||++|+++.|+++...
T Consensus 257 p~~Rps~~~ll~~l~~l~~p 276 (289)
T 4fvq_A 257 PDHRPSFRAIIRDLNSLFTP 276 (289)
T ss_dssp GGGSCCHHHHHHHHHTCC--
T ss_pred hhHCcCHHHHHHHHHHhcCC
Confidence 99999999999999988643
No 156
>4e5w_A Tyrosine-protein kinase JAK1; kinase domain, transferase-transferase inhibit complex; HET: PTR 0NT; 1.86A {Homo sapiens} PDB: 4e4l_A* 4e4n_A* 4ehz_A* 4ei4_A* 4fk6_A* 3eyg_A* 3eyh_A*
Probab=100.00 E-value=8.5e-39 Score=330.39 Aligned_cols=276 Identities=22% Similarity=0.396 Sum_probs=203.6
Q ss_pred cccccccccccCcccccceEEEEe-----CCCchhhhHHhHhhh-hhHHHHHHHHHHHHhcCCCCceeEEEEeeccccCC
Q 005045 387 STDNFSKENLIGTGSFGSVYKGTL-----GDGTIVAIKVLKLQQ-QGALKSFIDECNALKSTRHRNILRVITACSSVDLE 460 (717)
Q Consensus 387 ~~~~y~~~~~ig~g~~g~v~~~~~-----~~~~~vavK~~~~~~-~~~~~~~~~e~~~l~~l~h~ni~~~~~~~~~~~~~ 460 (717)
..++|++.+.||+|+||.||.|++ .+++.||+|++.... ....+.+.+|++++++++||||+++++++...
T Consensus 19 ~~~~~~~~~~lg~G~~g~V~~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~~--- 95 (302)
T 4e5w_A 19 EKRFLKRIRDLGEGHFGKVELCRYDPEGDNTGEQVAVKSLKPESGGNHIADLKKEIEILRNLYHENIVKYKGICTED--- 95 (302)
T ss_dssp CGGGEEEEEEEEECSSEEEEEEEECTTSSSCSEEEEEEEEC-----CCHHHHHHHHHHHHTCCCTTBCCEEEEEEC----
T ss_pred hhhhhhhhhccCCCCceEEEEEEEccccCccCeEEEEEEecccccchhHHHHHHHHHHHHhCCCCCeeeeeeEEecC---
Confidence 356799999999999999999983 378899999987543 33457789999999999999999999986532
Q ss_pred CCceEEEEEecCCCCChhhhccCCCCCcccccccCHHHHHHHHHHHHHHHHHHHhcCCCCeeecCCCCCCEEeCCCCceE
Q 005045 461 GNDFKALVFEFMSNGNLDQWLHPSPAEHYQFKKLSVIQRLNIAIDVASALDYLHHHCDTPIAHCDLKPSNVLLDKDMTAH 540 (717)
Q Consensus 461 ~~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~dlkp~NIll~~~~~~k 540 (717)
.....++||||+++++|.+++.... ..+++..+..++.|++.||+|||+. +|+||||||+||+++.++.+|
T Consensus 96 ~~~~~~lv~e~~~~~~L~~~l~~~~------~~~~~~~~~~~~~~i~~~l~~lH~~---~i~H~dikp~Nil~~~~~~~k 166 (302)
T 4e5w_A 96 GGNGIKLIMEFLPSGSLKEYLPKNK------NKINLKQQLKYAVQICKGMDYLGSR---QYVHRDLAARNVLVESEHQVK 166 (302)
T ss_dssp --CCEEEEEECCTTCBHHHHHHHHT------TTCCHHHHHHHHHHHHHHHHHHHHT---TEECSCCSGGGEEEEETTEEE
T ss_pred CCceEEEEEEeCCCCcHHHHHHhcc------ccCCHHHHHHHHHHHHHHHHHhhcC---CcccCCCchheEEEcCCCCEE
Confidence 2356899999999999999985432 4689999999999999999999998 999999999999999999999
Q ss_pred EeeeccchhcccccCCCCCCcceeecccccccccCCCccCC-CCCcccchhhHHHHHHHHHhCCCCCCCCCCCchhhhHH
Q 005045 541 VGDFGLAKFLFEISDNPSKNQTVSIGLKGSIGYIPPEHMNG-QVSILGDIYSYGILLLEMFTGKRPTGDMFKDDFSIHMF 619 (717)
Q Consensus 541 l~Dfg~~~~~~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~-~~~~~sDvwslG~vl~elltg~~p~~~~~~~~~~~~~~ 619 (717)
|+|||.+...... ...........+|..|+|||++.+ .++.++|||||||++|+|++|..|+.... ...
T Consensus 167 l~Dfg~~~~~~~~----~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~g~~p~~~~~------~~~ 236 (302)
T 4e5w_A 167 IGDFGLTKAIETD----KEYYTVKDDRDSPVFWYAPECLMQSKFYIASDVWSFGVTLHELLTYCDSDSSPM------ALF 236 (302)
T ss_dssp ECCCTTCEECCTT----CCEEECCCCTTCCGGGCCHHHHHHCEEEHHHHHHHHHHHHHHHHTTTCGGGSHH------HHH
T ss_pred ECcccccccccCC----CcceeccCCCCCCccccCCeeecCCCCCcchhHHHHHHHHHHHHHccCCCcchh------hHH
Confidence 9999999865211 111122334567888999999654 57899999999999999999999864321 000
Q ss_pred HHhcCChhhhhhcCCCCCCCCCCcHHHHHHHHHHHHHHhhhhhhhcchhhhHHHHHHHHHHhhccCCCCcCCCCCHHHHH
Q 005045 620 VSMALPDHVMDILDPSMPLDEENDEEQIEEVIEEKEMMIHIDLEVNTKNKLEECFVSVLRIGLMCSTTSPRERIAMNVVV 699 (717)
Q Consensus 620 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~cl~~~p~~Rps~~eil 699 (717)
.. ...+.. . ......+...... ......+..++..+.+++.+||+.+|++|||++|++
T Consensus 237 ~~---------~~~~~~---~---~~~~~~~~~~~~~-------~~~~~~~~~~~~~l~~li~~~l~~dp~~Rps~~~ll 294 (302)
T 4e5w_A 237 LK---------MIGPTH---G---QMTVTRLVNTLKE-------GKRLPCPPNCPDEVYQLMRKCWEFQPSNRTSFQNLI 294 (302)
T ss_dssp HH---------HHCSCC---G---GGHHHHHHHHHHT-------TCCCCCCTTCCHHHHHHHHHTTCSSGGGSCCHHHHH
T ss_pred hh---------ccCCcc---c---ccCHHHHHHHHhc-------cCCCCCCCCCCHHHHHHHHHHcCCCCCCCCCHHHHH
Confidence 00 000000 0 0000000000000 000111233466789999999999999999999999
Q ss_pred HHHHHHH
Q 005045 700 NNLKTIR 706 (717)
Q Consensus 700 ~~l~~i~ 706 (717)
+.|+++.
T Consensus 295 ~~L~~ll 301 (302)
T 4e5w_A 295 EGFEALL 301 (302)
T ss_dssp HHHHHHH
T ss_pred HHHHHHh
Confidence 9999875
No 157
>3qd2_B Eukaryotic translation initiation factor 2-alpha; EIF2A kinase, phosphoryalation, gene regulation; HET: TPO; 2.81A {Mus musculus}
Probab=100.00 E-value=2.8e-38 Score=331.20 Aligned_cols=262 Identities=24% Similarity=0.372 Sum_probs=196.8
Q ss_pred cccccccccccCcccccceEEEEeC-CCchhhhHHhHhhh-hhHHHHHHHHHHHHhcCCCCceeEEEEeeccccC-----
Q 005045 387 STDNFSKENLIGTGSFGSVYKGTLG-DGTIVAIKVLKLQQ-QGALKSFIDECNALKSTRHRNILRVITACSSVDL----- 459 (717)
Q Consensus 387 ~~~~y~~~~~ig~g~~g~v~~~~~~-~~~~vavK~~~~~~-~~~~~~~~~e~~~l~~l~h~ni~~~~~~~~~~~~----- 459 (717)
..++|++.+.||+|+||.||+|+++ +|+.||+|++.... ....+.+.+|++++++++||||+++++++.+...
T Consensus 4 ~~~~y~~~~~lG~G~~g~V~~a~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~hpniv~~~~~~~~~~~~~~~~ 83 (332)
T 3qd2_B 4 YLTDFEPIQCMGRGGFGVVFEAKNKVDDCNYAIKRIRLPNRELAREKVMREVKALAKLEHPGIVRYFNAWLETPPEKWQE 83 (332)
T ss_dssp HHHHEEEEEEEECC-CSEEEEEEETTTCCEEEEEEEECCSTTTHHHHHHHHHHHHTSCCCTTBCCEEEEEEECCSCHHHH
T ss_pred hhhcCceeeEecCCCCeEEEEEEEcCCCcEEEEEEeecCCchhHHHHHHHHHHHHHhCCCCCEeeEEEEEEEeccchhhh
Confidence 3568999999999999999999976 89999999987433 3356788999999999999999999998754321
Q ss_pred -----------------------------------------------CCCceEEEEEecCCCCChhhhccCCCCCccccc
Q 005045 460 -----------------------------------------------EGNDFKALVFEFMSNGNLDQWLHPSPAEHYQFK 492 (717)
Q Consensus 460 -----------------------------------------------~~~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~ 492 (717)
......++||||+++++|.+++..... ..
T Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lv~e~~~~~~L~~~~~~~~~----~~ 159 (332)
T 3qd2_B 84 EMDEIWLKDESTDWPLSSPSPMDAPSVKIRRMDPFSTKNTVGQLQPSSPKVYLYIQMQLCRKENLKDWMNRRCS----LE 159 (332)
T ss_dssp HHHC--------------------------------------------CCCEEEEEEECCCSSCHHHHHHTCCS----GG
T ss_pred hhhhhhhccccccccccCCCcccccccceeeccccCcccccccccCCCCCceEEEEEEecCCCCHHHHHhcccC----cc
Confidence 122348999999999999999986542 24
Q ss_pred ccCHHHHHHHHHHHHHHHHHHHhcCCCCeeecCCCCCCEEeCCCCceEEeeeccchhcccccCCCCC-----Ccceeecc
Q 005045 493 KLSVIQRLNIAIDVASALDYLHHHCDTPIAHCDLKPSNVLLDKDMTAHVGDFGLAKFLFEISDNPSK-----NQTVSIGL 567 (717)
Q Consensus 493 ~~~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~dlkp~NIll~~~~~~kl~Dfg~~~~~~~~~~~~~~-----~~~~~~~~ 567 (717)
..++..++.++.||+.||+|||+. +|+||||||+||+++.++.+||+|||.+............ ........
T Consensus 160 ~~~~~~~~~i~~qi~~aL~~LH~~---~ivH~Dlkp~NIll~~~~~~kL~DfG~a~~~~~~~~~~~~~~~~~~~~~~~~~ 236 (332)
T 3qd2_B 160 DREHGVCLHIFIQIAEAVEFLHSK---GLMHRDLKPSNIFFTMDDVVKVGDFGLVTAMDQDEEEQTVLTPMPAYATHTGQ 236 (332)
T ss_dssp GSCHHHHHHHHHHHHHHHHHHHHT---TEECCCCCGGGEEECTTCCEEECCCTTCEECSCC--------------CCCSC
T ss_pred chhhHHHHHHHHHHHHHHHHHHhC---CeeecCCCcccEEEeCCCCEEEeecCcccccccchhhcccccccccccccccc
Confidence 567778999999999999999998 9999999999999999999999999999876322111000 01122345
Q ss_pred cccccccCCCccCC-CCCcccchhhHHHHHHHHHhCCCCCCCCCCCchhhhHHHHhcCChhhhhhcCCCCCCCCCCcHHH
Q 005045 568 KGSIGYIPPEHMNG-QVSILGDIYSYGILLLEMFTGKRPTGDMFKDDFSIHMFVSMALPDHVMDILDPSMPLDEENDEEQ 646 (717)
Q Consensus 568 ~~~~~y~aPE~~~~-~~~~~sDvwslG~vl~elltg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 646 (717)
.||+.|+|||++.+ .++.++|||||||++|+|++|..|+... .. ..........+
T Consensus 237 ~gt~~y~aPE~~~~~~~~~~~Di~slG~il~el~~~~~~~~~~----~~-----------~~~~~~~~~~~--------- 292 (332)
T 3qd2_B 237 VGTKLYMSPEQIHGNNYSHKVDIFSLGLILFELLYSFSTQMER----VR-----------IITDVRNLKFP--------- 292 (332)
T ss_dssp C-CGGGSCHHHHHCCCCCTHHHHHHHHHHHHHHHSCCCCHHHH----HH-----------HHHHHHTTCCC---------
T ss_pred CCCcCccChHHhcCCCCcchhhHHHHHHHHHHHHHcCCChhHH----HH-----------HHHHhhccCCC---------
Confidence 69999999999655 5899999999999999999987664210 00 00000000000
Q ss_pred HHHHHHHHHHHhhhhhhhcchhhhHHHHHHHHHHhhccCCCCcCCCCCHHHHHH
Q 005045 647 IEEVIEEKEMMIHIDLEVNTKNKLEECFVSVLRIGLMCSTTSPRERIAMNVVVN 700 (717)
Q Consensus 647 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~cl~~~p~~Rps~~eil~ 700 (717)
.....++..+.+++.+||+.+|++|||++|+++
T Consensus 293 ---------------------~~~~~~~~~~~~li~~~l~~~p~~Rps~~~~l~ 325 (332)
T 3qd2_B 293 ---------------------LLFTQKYPQEHMMVQDMLSPSPTERPEATDIIE 325 (332)
T ss_dssp ---------------------HHHHHHCHHHHHHHHHHHCSSGGGSCCHHHHHH
T ss_pred ---------------------cccccCChhHHHHHHHHccCCCCcCCCHHHHhh
Confidence 012233556788999999999999999999986
No 158
>2vd5_A DMPK protein; serine/threonine-protein kinase, kinase, transferase, ATP-BI nucleotide-binding, cardiac contractility, muscle different; HET: BI8; 2.80A {Homo sapiens}
Probab=100.00 E-value=6.3e-39 Score=342.98 Aligned_cols=211 Identities=24% Similarity=0.380 Sum_probs=178.8
Q ss_pred CCcccccccccccccccccCcccccceEEEEeC-CCchhhhHHhHhhh---hhHHHHHHHHHHHHhcCCCCceeEEEEee
Q 005045 379 MSYSDISKSTDNFSKENLIGTGSFGSVYKGTLG-DGTIVAIKVLKLQQ---QGALKSFIDECNALKSTRHRNILRVITAC 454 (717)
Q Consensus 379 ~s~~~~~~~~~~y~~~~~ig~g~~g~v~~~~~~-~~~~vavK~~~~~~---~~~~~~~~~e~~~l~~l~h~ni~~~~~~~ 454 (717)
+.+.++....++|++.+.||+|+||.||+|+.+ +|+.||+|++.... ......+.+|++++..++||||+++++++
T Consensus 51 ~~~~~~~~~~~~f~~~~~lG~G~fG~V~~~~~~~~~~~vAiK~l~k~~~~~~~~~~~~~~E~~il~~~~hp~Iv~l~~~~ 130 (412)
T 2vd5_A 51 VRLKEVRLQRDDFEILKVIGRGAFSEVAVVKMKQTGQVYAMKIMNKWDMLKRGEVSCFREERDVLVNGDRRWITQLHFAF 130 (412)
T ss_dssp HHHHHHSCCGGGEEEEEEEEECSSCEEEEEEETTTCCEEEEEEEEHHHHHHHGGGCCHHHHHHHHHHSCTTTBCCEEEEE
T ss_pred hhhhhccCChhhEEEEEEEeeCCCeEEEEEEECCCCCEEEEEEEeHHHhhhHHHHHHHHHHHHHHHhcCCCCeeeEEEEE
Confidence 445566777899999999999999999999975 79999999986432 23345688999999999999999999985
Q ss_pred ccccCCCCceEEEEEecCCCCChhhhccCCCCCcccccccCHHHHHHHHHHHHHHHHHHHhcCCCCeeecCCCCCCEEeC
Q 005045 455 SSVDLEGNDFKALVFEFMSNGNLDQWLHPSPAEHYQFKKLSVIQRLNIAIDVASALDYLHHHCDTPIAHCDLKPSNVLLD 534 (717)
Q Consensus 455 ~~~~~~~~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~dlkp~NIll~ 534 (717)
.+.+..|+||||++||+|.+++.... ..+++..++.++.||+.||+|||+. +|+||||||+||+++
T Consensus 131 -----~~~~~~~lVmE~~~gg~L~~~l~~~~------~~l~~~~~~~~~~qi~~aL~~LH~~---giiHrDLKp~NILld 196 (412)
T 2vd5_A 131 -----QDENYLYLVMEYYVGGDLLTLLSKFG------ERIPAEMARFYLAEIVMAIDSVHRL---GYVHRDIKPDNILLD 196 (412)
T ss_dssp -----ECSSEEEEEECCCCSCBHHHHHHHHS------SCCCHHHHHHHHHHHHHHHHHHHHT---TEECCCCSGGGEEEC
T ss_pred -----eeCCEEEEEEcCCCCCcHHHHHHhcC------CCCCHHHHHHHHHHHHHHHHHHHHC---CeeecccCHHHeeec
Confidence 44568999999999999999997432 4689999999999999999999998 999999999999999
Q ss_pred CCCceEEeeeccchhcccccCCCCCCcceeecccccccccCCCccC--------CCCCcccchhhHHHHHHHHHhCCCCC
Q 005045 535 KDMTAHVGDFGLAKFLFEISDNPSKNQTVSIGLKGSIGYIPPEHMN--------GQVSILGDIYSYGILLLEMFTGKRPT 606 (717)
Q Consensus 535 ~~~~~kl~Dfg~~~~~~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~--------~~~~~~sDvwslG~vl~elltg~~p~ 606 (717)
.+|.+||+|||++...... .........||+.|+|||++. +.++.++|||||||++|||++|..||
T Consensus 197 ~~g~vkL~DFGla~~~~~~------~~~~~~~~~Gt~~Y~APE~l~~~~~~~~~~~~~~~~DiwSlGvilyelltG~~Pf 270 (412)
T 2vd5_A 197 RCGHIRLADFGSCLKLRAD------GTVRSLVAVGTPDYLSPEILQAVGGGPGTGSYGPECDWWALGVFAYEMFYGQTPF 270 (412)
T ss_dssp TTSCEEECCCTTCEECCTT------SCEECSSCCSCGGGCCHHHHHHHHTCTTCSEECTHHHHHHHHHHHHHHHHSSCTT
T ss_pred CCCCEEEeechhheeccCC------CccccceeccccCcCCHHHHhhcccCcCCCCCChHHhhhHHhHHHHHHHhCCCCC
Confidence 9999999999999765211 111223457999999999964 35899999999999999999999999
Q ss_pred CCC
Q 005045 607 GDM 609 (717)
Q Consensus 607 ~~~ 609 (717)
...
T Consensus 271 ~~~ 273 (412)
T 2vd5_A 271 YAD 273 (412)
T ss_dssp CCS
T ss_pred CCC
Confidence 754
No 159
>4eut_A Serine/threonine-protein kinase TBK1; ATP binding, phosphorylation, transferase-transferas inhibitor complex; HET: BX7; 2.60A {Homo sapiens}
Probab=100.00 E-value=1e-38 Score=342.23 Aligned_cols=288 Identities=18% Similarity=0.228 Sum_probs=212.9
Q ss_pred ccccccccccccCcccccceEEEEeC-CCchhhhHHhHhhh-hhHHHHHHHHHHHHhcCCCCceeEEEEeeccccCCCCc
Q 005045 386 KSTDNFSKENLIGTGSFGSVYKGTLG-DGTIVAIKVLKLQQ-QGALKSFIDECNALKSTRHRNILRVITACSSVDLEGND 463 (717)
Q Consensus 386 ~~~~~y~~~~~ig~g~~g~v~~~~~~-~~~~vavK~~~~~~-~~~~~~~~~e~~~l~~l~h~ni~~~~~~~~~~~~~~~~ 463 (717)
...++|++.++||+|+||.||+|++. +|+.||+|++.... ....+.+.+|++++++++||||+++++++... ...
T Consensus 6 ~~~~~y~i~~~LG~G~~g~Vy~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~E~~~l~~l~hpnIv~~~~~~~~~---~~~ 82 (396)
T 4eut_A 6 TSNHLWLLSDILGQGATANVFRGRHKKTGDLFAIKVFNNISFLRPVDVQMREFEVLKKLNHKNIVKLFAIEEET---TTR 82 (396)
T ss_dssp CSSEEEEEEEEEEECSSEEEEEEEETTTCCEEEEEEECGGGGGSCHHHHHHHHHHHHHCCCTTBCCEEEEEECT---TTC
T ss_pred CCCCceEEEEEEEcCCCeEEEEEEECCCCcEEEEEEeccccccchHHHHHHHHHHHHhcCCCCCCeEEEeeccC---CCC
Confidence 44679999999999999999999976 69999999987543 23456778999999999999999999986432 244
Q ss_pred eEEEEEecCCCCChhhhccCCCCCcccccccCHHHHHHHHHHHHHHHHHHHhcCCCCeeecCCCCCCEEe----CCCCce
Q 005045 464 FKALVFEFMSNGNLDQWLHPSPAEHYQFKKLSVIQRLNIAIDVASALDYLHHHCDTPIAHCDLKPSNVLL----DKDMTA 539 (717)
Q Consensus 464 ~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~dlkp~NIll----~~~~~~ 539 (717)
..++||||+++++|.+++..... ...+++..++.++.||+.||+|||+. +|+||||||+||++ +.++.+
T Consensus 83 ~~~lv~e~~~~g~L~~~l~~~~~----~~~l~~~~~~~i~~qi~~aL~~LH~~---~ivH~Dlkp~NIll~~~~~~~~~~ 155 (396)
T 4eut_A 83 HKVLIMEFCPCGSLYTVLEEPSN----AYGLPESEFLIVLRDVVGGMNHLREN---GIVHRNIKPGNIMRVIGEDGQSVY 155 (396)
T ss_dssp CEEEEECCCTTEEHHHHTTSGGG----TTCCCHHHHHHHHHHHHHHHHHHHHT---TEECCCCCGGGEEEEECTTSCEEE
T ss_pred eeEEEEecCCCCCHHHHHHhhhc----ccCCCHHHHHHHHHHHHHHHHHHHHC---CEEECCcCHHHEEEeecCCCceeE
Confidence 78999999999999999976421 13389999999999999999999998 99999999999999 777889
Q ss_pred EEeeeccchhcccccCCCCCCcceeecccccccccCCCccC---------CCCCcccchhhHHHHHHHHHhCCCCCCCCC
Q 005045 540 HVGDFGLAKFLFEISDNPSKNQTVSIGLKGSIGYIPPEHMN---------GQVSILGDIYSYGILLLEMFTGKRPTGDMF 610 (717)
Q Consensus 540 kl~Dfg~~~~~~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~---------~~~~~~sDvwslG~vl~elltg~~p~~~~~ 610 (717)
||+|||.+..... ........||..|+|||++. +.++.++|||||||++|||++|..||....
T Consensus 156 kL~DFG~a~~~~~--------~~~~~~~~gt~~y~aPE~~~~~~~~~~~~~~~~~~~DiwSlG~il~el~tg~~Pf~~~~ 227 (396)
T 4eut_A 156 KLTDFGAARELED--------DEQFVSLYGTEEYLHPDMYERAVLRKDHQKKYGATVDLWSIGVTFYHAATGSLPFRPFE 227 (396)
T ss_dssp EECCGGGCEECCC--------GGGSSCSSSCCTTCCHHHHHHHCC--CHHHHHHHHHHHHHHHHHHHHHHHSSCSEECTT
T ss_pred EEecCCCceEccC--------CCccccccCCccccCHHHhhccccccccccCCCcHHHHHHHHHHHHHHHHCCCCCCCCC
Confidence 9999999986521 11223356899999999964 346889999999999999999999997643
Q ss_pred CCc--hhhhHHHHhcCChhhhhhcCCCCCCCCCCcHHHHHHHHHHHHHHhhhhhhhcchhhhHHHHHHHHHHhhccCCCC
Q 005045 611 KDD--FSIHMFVSMALPDHVMDILDPSMPLDEENDEEQIEEVIEEKEMMIHIDLEVNTKNKLEECFVSVLRIGLMCSTTS 688 (717)
Q Consensus 611 ~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~cl~~~ 688 (717)
... ...........|......+.........+.. ............+..+.+++.+||++|
T Consensus 228 ~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~-----------------~~~~~~~l~~~~~~~l~~ll~~~L~~d 290 (396)
T 4eut_A 228 GPRRNKEVMYKIITGKPSGAISGVQKAENGPIDWSG-----------------DMPVSCSLSRGLQVLLTPVLANILEAD 290 (396)
T ss_dssp CTTTCHHHHHHHHHSCCTTCCEEEECSTTCCEEEES-----------------SCCTTCSSCHHHHHHHHHHHHHHSCCC
T ss_pred cccchHHHHHHHhcCCCcccchhheeccCCCcccCc-----------------cCCcccccchHHHhhchHHHHHhhccC
Confidence 322 1222222222221111111100000000000 000001123455778899999999999
Q ss_pred cCCCCCHHHHHHHHHHHHHH
Q 005045 689 PRERIAMNVVVNNLKTIRNC 708 (717)
Q Consensus 689 p~~Rps~~eil~~l~~i~~~ 708 (717)
|++|||++|+++.++.+...
T Consensus 291 P~~R~s~~e~l~~l~~il~~ 310 (396)
T 4eut_A 291 QEKCWGFDQFFAETSDILHR 310 (396)
T ss_dssp TTTSCCHHHHHHHHHHHHTC
T ss_pred hhhhccHHHHHHHHHHHhhc
Confidence 99999999999999888753
No 160
>2jii_A Serine/threonine-protein kinase VRK3 molecule: VA related kinase 3; transferase, pseudo kinase domain, vaccinia related kinase, ATP-binding; 2.00A {Homo sapiens}
Probab=100.00 E-value=2.6e-39 Score=341.69 Aligned_cols=273 Identities=15% Similarity=0.181 Sum_probs=207.0
Q ss_pred ccccccccccCcccccceEEEEeCC---------CchhhhHHhHhhhhhHHHHHHHHHHHHhcCCCCceeE---------
Q 005045 388 TDNFSKENLIGTGSFGSVYKGTLGD---------GTIVAIKVLKLQQQGALKSFIDECNALKSTRHRNILR--------- 449 (717)
Q Consensus 388 ~~~y~~~~~ig~g~~g~v~~~~~~~---------~~~vavK~~~~~~~~~~~~~~~e~~~l~~l~h~ni~~--------- 449 (717)
.++|++.+.||+|+||.||+|++.. ++.||+|++... ..+.+|++++++++||||++
T Consensus 41 ~~~y~~~~~lg~G~~g~Vy~~~~~~t~~~~~~~~~~~vavK~~~~~-----~~~~~E~~~l~~l~h~niv~~~~~~~~~~ 115 (352)
T 2jii_A 41 GRQWKLKSFQTRDNQGILYEAAPTSTLTCDSGPQKQKFSLKLDAKD-----GRLFNEQNFFQRAAKPLQVNKWKKLYSTP 115 (352)
T ss_dssp SCEEEEEEEEEEETTEEEEEEEECC-----------CEEEEEEETT-----STHHHHHHHHHHHCCHHHHHHHHHHTTCT
T ss_pred CCeEEEEEEecCCCCeEEEEEeecCCccccccccCceEEEEEeccc-----chHHHHHHHHHHhcccchhhhhhhhccCC
Confidence 5799999999999999999999653 789999998643 46778999999999999987
Q ss_pred ------EEEeeccccCCCCceEEEEEecCCCCChhhhccCCCCCcccccccCHHHHHHHHHHHHHHHHHHHhcCCCCeee
Q 005045 450 ------VITACSSVDLEGNDFKALVFEFMSNGNLDQWLHPSPAEHYQFKKLSVIQRLNIAIDVASALDYLHHHCDTPIAH 523 (717)
Q Consensus 450 ------~~~~~~~~~~~~~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~i~~~i~~~l~~LH~~~~~~ivH 523 (717)
+++++. ......++||||+ +++|.+++.... ...+++..+..++.||+.||+|||+. +|+|
T Consensus 116 ~~~i~~~~~~~~----~~~~~~~lv~e~~-~~~L~~~l~~~~-----~~~l~~~~~~~i~~qi~~~L~~LH~~---~ivH 182 (352)
T 2jii_A 116 LLAIPTCMGFGV----HQDKYRFLVLPSL-GRSLQSALDVSP-----KHVLSERSVLQVACRLLDALEFLHEN---EYVH 182 (352)
T ss_dssp TCSCCCCCEEEE----ETTTEEEEEEECC-CEEHHHHHHHSG-----GGCCCHHHHHHHHHHHHHHHHHHHHT---TCBC
T ss_pred ccCccchhhccc----cCCcEEEEEecCC-CcCHHHHHHhCC-----cCCCCHHHHHHHHHHHHHHHHHHHhC---CccC
Confidence 344432 2356889999999 999999997541 15689999999999999999999998 9999
Q ss_pred cCCCCCCEEeCCCC--ceEEeeeccchhcccccCCCCCCcceeecccccccccCCCccCC-CCCcccchhhHHHHHHHHH
Q 005045 524 CDLKPSNVLLDKDM--TAHVGDFGLAKFLFEISDNPSKNQTVSIGLKGSIGYIPPEHMNG-QVSILGDIYSYGILLLEMF 600 (717)
Q Consensus 524 ~dlkp~NIll~~~~--~~kl~Dfg~~~~~~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~-~~~~~sDvwslG~vl~ell 600 (717)
|||||+||+++.++ .+||+|||.+.....................||+.|+|||++.+ .++.++|||||||++|+|+
T Consensus 183 ~Dikp~NIl~~~~~~~~~kl~Dfg~a~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Di~slG~il~el~ 262 (352)
T 2jii_A 183 GNVTAENIFVDPEDQSQVTLAGYGFAFRYCPSGKHVAYVEGSRSPHEGDLEFISMDLHKGCGPSRRSDLQSLGYCMLKWL 262 (352)
T ss_dssp SCCCGGGEEEETTEEEEEEECCGGGCBCSSGGGCCCCCCTTSSCTTCSCTTTCCHHHHTTCCCCHHHHHHHHHHHHHHHH
T ss_pred CCCCHHHEEEcCCCCceEEEecCcceeeccCCCccccccccccccccCCccccCHHHHccCCCCchhhHHHHHHHHHHHH
Confidence 99999999999998 99999999998764433322222223344579999999999766 5899999999999999999
Q ss_pred hCCCCCCCCCCCchhhhHHHHhcCChhhhhhcCCCCCCCCCCcHHHHHHHHHHHHHHhhhhhhhcchhhhHHHHHHHHHH
Q 005045 601 TGKRPTGDMFKDDFSIHMFVSMALPDHVMDILDPSMPLDEENDEEQIEEVIEEKEMMIHIDLEVNTKNKLEECFVSVLRI 680 (717)
Q Consensus 601 tg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l 680 (717)
+|..||............... .+......+.+.... ...++..+.++
T Consensus 263 ~g~~pf~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~--------------------------------~~~~~~~l~~l 309 (352)
T 2jii_A 263 YGFLPWTNCLPNTEDIMKQKQ-KFVDKPGPFVGPCGH--------------------------------WIRPSETLQKY 309 (352)
T ss_dssp HSCCTTGGGTTCHHHHHHHHH-HHHHSCCCEECTTSC--------------------------------EECCCHHHHHH
T ss_pred hCCCCcccCCcCHHHHHHHHH-hccCChhhhhhhccc--------------------------------cCCCcHHHHHH
Confidence 999999765322221111111 000000111111000 01125668899
Q ss_pred hhccCCCCcCCCCCHHHHHHHHHHHHHHHHh
Q 005045 681 GLMCSTTSPRERIAMNVVVNNLKTIRNCFLE 711 (717)
Q Consensus 681 i~~cl~~~p~~Rps~~eil~~l~~i~~~~~~ 711 (717)
+.+||+.+|++|||++||++.|+++.++...
T Consensus 310 i~~~l~~dp~~Rps~~~l~~~L~~~~~~~~~ 340 (352)
T 2jii_A 310 LKVVMALTYEEKPPYAMLRNNLEALLQDLRV 340 (352)
T ss_dssp HHHHHTCCTTCCCCHHHHHHHHHHHHHHTTC
T ss_pred HHHHHhCChhhCCCHHHHHHHHHHHHHhcCC
Confidence 9999999999999999999999999877653
No 161
>1byg_A CSK, protein (C-terminal SRC kinase); protein kinase, phosphorylation, staurosporine, transferase; HET: STU; 2.40A {Homo sapiens} SCOP: d.144.1.7 PDB: 3d7u_A 3d7t_A*
Probab=100.00 E-value=7.3e-39 Score=326.64 Aligned_cols=260 Identities=26% Similarity=0.375 Sum_probs=200.3
Q ss_pred cccccccccccccccccCcccccceEEEEeCCCchhhhHHhHhhhhhHHHHHHHHHHHHhcCCCCceeEEEEeeccccCC
Q 005045 381 YSDISKSTDNFSKENLIGTGSFGSVYKGTLGDGTIVAIKVLKLQQQGALKSFIDECNALKSTRHRNILRVITACSSVDLE 460 (717)
Q Consensus 381 ~~~~~~~~~~y~~~~~ig~g~~g~v~~~~~~~~~~vavK~~~~~~~~~~~~~~~e~~~l~~l~h~ni~~~~~~~~~~~~~ 460 (717)
-.++....++|++.+.||+|++|.||.|.++ |+.||+|++.... ..+.+.+|++++++++||||+++++++. .
T Consensus 13 ~~~~~~~~~~y~~~~~lg~G~~g~V~~~~~~-~~~vavK~~~~~~--~~~~~~~E~~~l~~l~h~~iv~~~~~~~----~ 85 (278)
T 1byg_A 13 RSGWALNMKELKLLQTIGKGEFGDVMLGDYR-GNKVAVKCIKNDA--TAQAFLAEASVMTQLRHSNLVQLLGVIV----E 85 (278)
T ss_dssp --CCBCCGGGEEEEEEEEECSSCEEEEEEET-TEEEEEEECCCCC----HHHHHTHHHHTTCCCTTBCCEEEEEC----C
T ss_pred hccccCChhhceEEeEEecCCCceEEEEEEc-CCEEEEEEecchh--HHHHHHHHHHHHHhCCCCCEeeEEEEEE----c
Confidence 3344556789999999999999999999874 8899999987443 4577889999999999999999999863 3
Q ss_pred CCceEEEEEecCCCCChhhhccCCCCCcccccccCHHHHHHHHHHHHHHHHHHHhcCCCCeeecCCCCCCEEeCCCCceE
Q 005045 461 GNDFKALVFEFMSNGNLDQWLHPSPAEHYQFKKLSVIQRLNIAIDVASALDYLHHHCDTPIAHCDLKPSNVLLDKDMTAH 540 (717)
Q Consensus 461 ~~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~dlkp~NIll~~~~~~k 540 (717)
..+..++||||+++++|.+++.... ...+++..+..++.|++.|++|||+. +++||||||+||+++.++.+|
T Consensus 86 ~~~~~~lv~e~~~~~~L~~~l~~~~-----~~~~~~~~~~~~~~~i~~~l~~lH~~---~i~H~dlkp~Nil~~~~~~~~ 157 (278)
T 1byg_A 86 EKGGLYIVTEYMAKGSLVDYLRSRG-----RSVLGGDCLLKFSLDVCEAMEYLEGN---NFVHRDLAARNVLVSEDNVAK 157 (278)
T ss_dssp C--CCEEEECCCTTEEHHHHHHHHH-----HHHCCHHHHHHHHHHHHHHHHHHHHT---TCCCSCCSGGGEEECTTSCEE
T ss_pred CCCceEEEEecCCCCCHHHHHHhcc-----cccCCHHHHHHHHHHHHHHHHHHHhC---CccccCCCcceEEEeCCCcEE
Confidence 3457899999999999999987431 13478999999999999999999998 999999999999999999999
Q ss_pred EeeeccchhcccccCCCCCCcceeecccccccccCCCccC-CCCCcccchhhHHHHHHHHHh-CCCCCCCCCCCchhhhH
Q 005045 541 VGDFGLAKFLFEISDNPSKNQTVSIGLKGSIGYIPPEHMN-GQVSILGDIYSYGILLLEMFT-GKRPTGDMFKDDFSIHM 618 (717)
Q Consensus 541 l~Dfg~~~~~~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~-~~~~~~sDvwslG~vl~ellt-g~~p~~~~~~~~~~~~~ 618 (717)
|+|||.+...... .....++..|+|||++. +.++.++|||||||++|+|++ |..||......+. ..
T Consensus 158 l~Dfg~~~~~~~~----------~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~l~t~g~~p~~~~~~~~~--~~ 225 (278)
T 1byg_A 158 VSDFGLTKEASST----------QDTGKLPVKWTAPEALREKKFSTKSDVWSFGILLWEIYSFGRVPYPRIPLKDV--VP 225 (278)
T ss_dssp ECCCCC----------------------CCTTTSCHHHHHHCCCCHHHHHHHHHHHHHHHHTTSCCSCTTSCGGGH--HH
T ss_pred Eeecccccccccc----------ccCCCccccccCHHHhCCCCCCchhcHHHHHHHHHHHHhCCCCCCCCCCHHHH--HH
Confidence 9999998754211 11234678899999964 458999999999999999998 9999976432211 11
Q ss_pred HHHhcCChhhhhhcCCCCCCCCCCcHHHHHHHHHHHHHHhhhhhhhcchhhhHHHHHHHHHHhhccCCCCcCCCCCHHHH
Q 005045 619 FVSMALPDHVMDILDPSMPLDEENDEEQIEEVIEEKEMMIHIDLEVNTKNKLEECFVSVLRIGLMCSTTSPRERIAMNVV 698 (717)
Q Consensus 619 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~cl~~~p~~Rps~~ei 698 (717)
... ...... .+..++..+.+++.+||+.+|++|||+.|+
T Consensus 226 ~~~--------~~~~~~---------------------------------~~~~~~~~l~~li~~~l~~~p~~Rps~~~l 264 (278)
T 1byg_A 226 RVE--------KGYKMD---------------------------------APDGCPPAVYEVMKNCWHLDAAMRPSFLQL 264 (278)
T ss_dssp HHT--------TTCCCC---------------------------------CCTTCCHHHHHHHHHHTCSSGGGSCCHHHH
T ss_pred HHh--------cCCCCC---------------------------------CcccCCHHHHHHHHHHhcCChhhCCCHHHH
Confidence 110 000001 111235678899999999999999999999
Q ss_pred HHHHHHHHHH
Q 005045 699 VNNLKTIRNC 708 (717)
Q Consensus 699 l~~l~~i~~~ 708 (717)
++.|+.++..
T Consensus 265 ~~~L~~i~~~ 274 (278)
T 1byg_A 265 REQLEHIKTH 274 (278)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHhh
Confidence 9999999865
No 162
>2h34_A Serine/threonine-protein kinase PKNE; apoenzyme, transferase; 2.80A {Mycobacterium tuberculosis}
Probab=100.00 E-value=9.4e-39 Score=330.91 Aligned_cols=263 Identities=19% Similarity=0.230 Sum_probs=197.6
Q ss_pred cccccccccccccCcccccceEEEEeC-CCchhhhHHhHhhh---hhHHHHHHHHHHHHhcCCCCceeEEEEeeccccCC
Q 005045 385 SKSTDNFSKENLIGTGSFGSVYKGTLG-DGTIVAIKVLKLQQ---QGALKSFIDECNALKSTRHRNILRVITACSSVDLE 460 (717)
Q Consensus 385 ~~~~~~y~~~~~ig~g~~g~v~~~~~~-~~~~vavK~~~~~~---~~~~~~~~~e~~~l~~l~h~ni~~~~~~~~~~~~~ 460 (717)
....++|++.+.||+|+||.||+|.+. +++.||+|++.... ....+.+.+|++++++++||||+++++++.
T Consensus 30 ~~~~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~~e~~~l~~l~hp~iv~~~~~~~----- 104 (309)
T 2h34_A 30 GTQFGPYRLRRLVGRGGMGDVYEAEDTVRERIVALKLMSETLSSDPVFRTRMQREARTAGRLQEPHVVPIHDFGE----- 104 (309)
T ss_dssp ----CCEEEEEEEEECSSSEEEEEEETTTTEEEEEEECGGGGGGSHHHHHHHHHHHHHHTTCCCTTBCCEEEEEE-----
T ss_pred CcEeccEEEEEEEcCCCCeeEEEEEEcCCCeEEEEEecCcccccCHHHHHHHHHHHHHHhhcCCCCeeEEEEEEe-----
Confidence 344679999999999999999999965 78999999987542 334578899999999999999999999954
Q ss_pred CCceEEEEEecCCCCChhhhccCCCCCcccccccCHHHHHHHHHHHHHHHHHHHhcCCCCeeecCCCCCCEEeCCCCceE
Q 005045 461 GNDFKALVFEFMSNGNLDQWLHPSPAEHYQFKKLSVIQRLNIAIDVASALDYLHHHCDTPIAHCDLKPSNVLLDKDMTAH 540 (717)
Q Consensus 461 ~~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~dlkp~NIll~~~~~~k 540 (717)
..+..++||||+++++|.+++... ..+++..+..++.||+.||+|||+. +|+||||||+||+++.++.+|
T Consensus 105 ~~~~~~lv~e~~~~~~L~~~l~~~-------~~~~~~~~~~i~~qi~~~l~~lH~~---~i~H~dlkp~NIl~~~~~~~k 174 (309)
T 2h34_A 105 IDGQLYVDMRLINGVDLAAMLRRQ-------GPLAPPRAVAIVRQIGSALDAAHAA---GATHRDVKPENILVSADDFAY 174 (309)
T ss_dssp ETTEEEEEEECCCCEEHHHHHHHH-------CSCCHHHHHHHHHHHHHHHHHHHHT---TCCCSCCCGGGEEECTTSCEE
T ss_pred eCCeEEEEEEecCCCCHHHHHHhc-------CCCCHHHHHHHHHHHHHHHHHHHHC---cCCcCCCChHHEEEcCCCCEE
Confidence 345899999999999999999743 4689999999999999999999998 999999999999999999999
Q ss_pred EeeeccchhcccccCCCCCCcceeecccccccccCCCccCC-CCCcccchhhHHHHHHHHHhCCCCCCCCCCCchhhhHH
Q 005045 541 VGDFGLAKFLFEISDNPSKNQTVSIGLKGSIGYIPPEHMNG-QVSILGDIYSYGILLLEMFTGKRPTGDMFKDDFSIHMF 619 (717)
Q Consensus 541 l~Dfg~~~~~~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~-~~~~~sDvwslG~vl~elltg~~p~~~~~~~~~~~~~~ 619 (717)
|+|||.+...... .........+++.|+|||++.+ .++.++|||||||++|+|++|..||...... .....
T Consensus 175 l~Dfg~~~~~~~~------~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~g~~pf~~~~~~--~~~~~ 246 (309)
T 2h34_A 175 LVDFGIASATTDE------KLTQLGNTVGTLYYMAPERFSESHATYRADIYALTCVLYECLTGSPPYQGDQLS--VMGAH 246 (309)
T ss_dssp ECSCCC----------------------CCGGGCCGGGTCC----CCCHHHHHHHHHHHHHHSSCSSCSCHHH--HHHHH
T ss_pred EecCccCcccccc------ccccccccCCCcCccCHHHHcCCCCCchHhHHHHHHHHHHHHHCCCCCCCchHH--HHHHH
Confidence 9999998765211 1112234568999999999755 4799999999999999999999999753211 11111
Q ss_pred HHhcCChhhhhhcCCCCCCCCCCcHHHHHHHHHHHHHHhhhhhhhcchhhhHHHHHHHHHHhhccCCCCcCCCC-CHHHH
Q 005045 620 VSMALPDHVMDILDPSMPLDEENDEEQIEEVIEEKEMMIHIDLEVNTKNKLEECFVSVLRIGLMCSTTSPRERI-AMNVV 698 (717)
Q Consensus 620 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~cl~~~p~~Rp-s~~ei 698 (717)
.....+.. . .....++..+.+++.+||+.+|++|| |++|+
T Consensus 247 ~~~~~~~~--~-------------------------------------~~~~~~~~~l~~li~~~l~~dP~~Rp~s~~~l 287 (309)
T 2h34_A 247 INQAIPRP--S-------------------------------------TVRPGIPVAFDAVIARGMAKNPEDRYVTCGDL 287 (309)
T ss_dssp HHSCCCCG--G-------------------------------------GTSTTCCTHHHHHHHHHTCSSGGGSCSSHHHH
T ss_pred hccCCCCc--c-------------------------------------ccCCCCCHHHHHHHHHhccCCHHHHHHhHHHH
Confidence 11110000 0 01122255678999999999999999 99999
Q ss_pred HHHHHHHHHHH
Q 005045 699 VNNLKTIRNCF 709 (717)
Q Consensus 699 l~~l~~i~~~~ 709 (717)
++.|+++....
T Consensus 288 ~~~l~~~l~~~ 298 (309)
T 2h34_A 288 SAAAHAALATA 298 (309)
T ss_dssp HHHHHHTCC--
T ss_pred HHHHHHHHHhh
Confidence 99999876544
No 163
>3kex_A Receptor tyrosine-protein kinase ERBB-3; kinase domain, inactive kinase, HER3, ATP-binding, cell membrane, membrane, nucleotide-binding; HET: ANP; 2.80A {Homo sapiens} PDB: 3lmg_A*
Probab=100.00 E-value=4.4e-39 Score=335.96 Aligned_cols=259 Identities=24% Similarity=0.392 Sum_probs=198.7
Q ss_pred cccccccccccCcccccceEEEEeC-CCch----hhhHHhHhhh-hhHHHHHHHHHHHHhcCCCCceeEEEEeeccccCC
Q 005045 387 STDNFSKENLIGTGSFGSVYKGTLG-DGTI----VAIKVLKLQQ-QGALKSFIDECNALKSTRHRNILRVITACSSVDLE 460 (717)
Q Consensus 387 ~~~~y~~~~~ig~g~~g~v~~~~~~-~~~~----vavK~~~~~~-~~~~~~~~~e~~~l~~l~h~ni~~~~~~~~~~~~~ 460 (717)
..++|++.+.||+|+||.||+|.+. +++. ||+|.+.... ......+.+|+.++++++||||+++++++.
T Consensus 11 ~~~~y~~~~~lG~G~~g~Vy~~~~~~~~~~~~~kv~~K~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~----- 85 (325)
T 3kex_A 11 KETELRKLKVLGSGVFGTVHKGVWIPEGESIKIPVCIKVIEDKSGRQSFQAVTDHMLAIGSLDHAHIVRLLGLCP----- 85 (325)
T ss_dssp CTTTEEEEEEEECCSSCEEEEEEECCTTCSCCEEEEEEEECCTTSCSCBCSCCHHHHHHHTCCCTTBCCEEEEEC-----
T ss_pred CHhHceeeeeeeecCCceEEEEEEcCCCceEEEEEEEEeccccccHHHHHHHHHHHHHHhcCCCCCcCeEEEEEc-----
Confidence 3568999999999999999999964 5665 5556553222 223456778999999999999999999863
Q ss_pred CCceEEEEEecCCCCChhhhccCCCCCcccccccCHHHHHHHHHHHHHHHHHHHhcCCCCeeecCCCCCCEEeCCCCceE
Q 005045 461 GNDFKALVFEFMSNGNLDQWLHPSPAEHYQFKKLSVIQRLNIAIDVASALDYLHHHCDTPIAHCDLKPSNVLLDKDMTAH 540 (717)
Q Consensus 461 ~~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~dlkp~NIll~~~~~~k 540 (717)
....++||||+++++|.+++.... ..+++..+..++.||+.||+|||+. +|+||||||+||+++.++.+|
T Consensus 86 -~~~~~~v~e~~~~~~L~~~l~~~~------~~~~~~~~~~~~~qi~~~l~~lH~~---~ivH~Dikp~Nil~~~~~~~k 155 (325)
T 3kex_A 86 -GSSLQLVTQYLPLGSLLDHVRQHR------GALGPQLLLNWGVQIAKGMYYLEEH---GMVHRNLAARNVLLKSPSQVQ 155 (325)
T ss_dssp -BSSEEEEEECCTTCBSHHHHHSSG------GGSCTTHHHHHHHHHHHHHHHHHHT---TCCCSCCSSTTEEESSSSCEE
T ss_pred -CCccEEEEEeCCCCCHHHHHHHcc------ccCCHHHHHHHHHHHHHHHHHHHhC---CCCCCccchheEEECCCCeEE
Confidence 246899999999999999987542 5688999999999999999999998 999999999999999999999
Q ss_pred EeeeccchhcccccCCCCCCcceeecccccccccCCCccC-CCCCcccchhhHHHHHHHHHh-CCCCCCCCCCCchhhhH
Q 005045 541 VGDFGLAKFLFEISDNPSKNQTVSIGLKGSIGYIPPEHMN-GQVSILGDIYSYGILLLEMFT-GKRPTGDMFKDDFSIHM 618 (717)
Q Consensus 541 l~Dfg~~~~~~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~-~~~~~~sDvwslG~vl~ellt-g~~p~~~~~~~~~~~~~ 618 (717)
|+|||.++...... .........++..|+|||++. +.++.++|||||||++|+|++ |..||........ ..
T Consensus 156 l~Dfg~a~~~~~~~-----~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~~l~el~~~g~~p~~~~~~~~~--~~ 228 (325)
T 3kex_A 156 VADFGVADLLPPDD-----KQLLYSEAKTPIKWMALESIHFGKYTHQSDVWSYGVTVWELMTFGAEPYAGLRLAEV--PD 228 (325)
T ss_dssp ECSCSGGGGSCCCT-----TCCC-----CCTTTSCHHHHHHCCCCHHHHHHHHHHHHHHHHTTSCCTTTTSCTTHH--HH
T ss_pred ECCCCcccccCccc-----ccccccCCCCcccccChHHhccCCCChhhHhHHhHHHHHHHHhCCCCCccccCHHHH--HH
Confidence 99999998762211 112223456788999999965 568999999999999999999 9999976533221 11
Q ss_pred HHHhcCChhhhhhcCCCCCCCCCCcHHHHHHHHHHHHHHhhhhhhhcchhhhHHHHHHHHHHhhccCCCCcCCCCCHHHH
Q 005045 619 FVSMALPDHVMDILDPSMPLDEENDEEQIEEVIEEKEMMIHIDLEVNTKNKLEECFVSVLRIGLMCSTTSPRERIAMNVV 698 (717)
Q Consensus 619 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~cl~~~p~~Rps~~ei 698 (717)
...... .... +..++..+.+++.+||+.+|++|||++|+
T Consensus 229 ~~~~~~--------~~~~---------------------------------~~~~~~~~~~li~~~l~~dp~~Rps~~el 267 (325)
T 3kex_A 229 LLEKGE--------RLAQ---------------------------------PQICTIDVYMVMVKCWMIDENIRPTFKEL 267 (325)
T ss_dssp HHHTTC--------BCCC---------------------------------CTTBCTTTTHHHHHHTCSCTTTSCCHHHH
T ss_pred HHHcCC--------CCCC---------------------------------CCcCcHHHHHHHHHHcCCChhhCcCHHHH
Confidence 111100 0000 01123346789999999999999999999
Q ss_pred HHHHHHHHHH
Q 005045 699 VNNLKTIRNC 708 (717)
Q Consensus 699 l~~l~~i~~~ 708 (717)
++.|+.+...
T Consensus 268 ~~~l~~~~~~ 277 (325)
T 3kex_A 268 ANEFTRMARD 277 (325)
T ss_dssp HHHHHHHTTS
T ss_pred HHHHHHHHhc
Confidence 9999988643
No 164
>1xbb_A Tyrosine-protein kinase SYK; gleevec, STI-571, imatinib, spleen typrosine kinase, active conformation, structural genomics, structural genomix; HET: STI; 1.57A {Homo sapiens} SCOP: d.144.1.7 PDB: 1xba_A* 1xbc_A* 3fqe_A* 3fqh_A* 3fqs_A* 3emg_A* 3srv_A* 4dfl_A* 4dfn_A* 3vf8_A* 3vf9_A*
Probab=100.00 E-value=7e-39 Score=329.08 Aligned_cols=270 Identities=23% Similarity=0.354 Sum_probs=208.1
Q ss_pred cccccccccccccc-ccCcccccceEEEEe---CCCchhhhHHhHhhh--hhHHHHHHHHHHHHhcCCCCceeEEEEeec
Q 005045 382 SDISKSTDNFSKEN-LIGTGSFGSVYKGTL---GDGTIVAIKVLKLQQ--QGALKSFIDECNALKSTRHRNILRVITACS 455 (717)
Q Consensus 382 ~~~~~~~~~y~~~~-~ig~g~~g~v~~~~~---~~~~~vavK~~~~~~--~~~~~~~~~e~~~l~~l~h~ni~~~~~~~~ 455 (717)
.++....++|++.+ .||+|+||.||+|.+ .+++.||+|++.... ....+.+.+|++++++++||||+++++++.
T Consensus 9 ~~~~~~~~~y~~~~~~lg~G~~g~Vy~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~ 88 (291)
T 1xbb_A 9 KEVYLDRKLLTLEDKELGSGNFGTVKKGYYQMKKVVKTVAVKILKNEANDPALKDELLAEANVMQQLDNPYIVRMIGICE 88 (291)
T ss_dssp --CBCCGGGEEEEEEEEEECSSEEEEEEEEECSSSEEEEEEEEEC-----CHHHHHHHHHHHHHHTCCCTTBCCEEEEEE
T ss_pred ceeeecchhhhhccCccccccCeeeEeeeecCCCceeeEEEEeecccccCHHHHHHHHHHHHHHHhCCCCCEEEEEEEEC
Confidence 34455677899998 999999999999963 357889999987542 334678999999999999999999999862
Q ss_pred cccCCCCceEEEEEecCCCCChhhhccCCCCCcccccccCHHHHHHHHHHHHHHHHHHHhcCCCCeeecCCCCCCEEeCC
Q 005045 456 SVDLEGNDFKALVFEFMSNGNLDQWLHPSPAEHYQFKKLSVIQRLNIAIDVASALDYLHHHCDTPIAHCDLKPSNVLLDK 535 (717)
Q Consensus 456 ~~~~~~~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~dlkp~NIll~~ 535 (717)
.+..++||||+++++|.+++... ..+++..+..++.||+.||+|||+. +++||||||+||+++.
T Consensus 89 ------~~~~~lv~e~~~~~~L~~~l~~~-------~~~~~~~~~~i~~qi~~~l~~LH~~---~i~H~dikp~Nil~~~ 152 (291)
T 1xbb_A 89 ------AESWMLVMEMAELGPLNKYLQQN-------RHVKDKNIIELVHQVSMGMKYLEES---NFVHRDLAARNVLLVT 152 (291)
T ss_dssp ------SSSEEEEEECCTTEEHHHHHHHC-------TTCCHHHHHHHHHHHHHHHHHHHHT---TEECSCCSGGGEEEEE
T ss_pred ------CCCcEEEEEeCCCCCHHHHHHhC-------cCCCHHHHHHHHHHHHHHHHHHHhC---CeEcCCCCcceEEEeC
Confidence 34689999999999999999754 4689999999999999999999998 9999999999999999
Q ss_pred CCceEEeeeccchhcccccCCCCCCcceeecccccccccCCCccCC-CCCcccchhhHHHHHHHHHh-CCCCCCCCCCCc
Q 005045 536 DMTAHVGDFGLAKFLFEISDNPSKNQTVSIGLKGSIGYIPPEHMNG-QVSILGDIYSYGILLLEMFT-GKRPTGDMFKDD 613 (717)
Q Consensus 536 ~~~~kl~Dfg~~~~~~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~-~~~~~sDvwslG~vl~ellt-g~~p~~~~~~~~ 613 (717)
++.+||+|||.+...... ...........+++.|+|||++.+ .++.++|||||||++|+|++ |..||.......
T Consensus 153 ~~~~kl~Dfg~~~~~~~~----~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~~g~~p~~~~~~~~ 228 (291)
T 1xbb_A 153 QHYAKISDFGLSKALRAD----ENYYKAQTHGKWPVKWYAPECINYYKFSSKSDVWSFGVLMWEAFSYGQKPYRGMKGSE 228 (291)
T ss_dssp TTEEEECCCTTCEECCTT----CSEEEC----CCCGGGCCHHHHHHCEEEHHHHHHHHHHHHHHHHTTTCCSSTTCCHHH
T ss_pred CCcEEEccCCcceeeccC----CCcccccccCCCCceeeChHHhccCCCChhhhHHHHHHHHHHHHhcCCCCCCCCCHHH
Confidence 999999999999765211 111111222346788999999654 47899999999999999999 999997643211
Q ss_pred hhhhHHHHhcCChhhhhhcCCCCCCCCCCcHHHHHHHHHHHHHHhhhhhhhcchhhhHHHHHHHHHHhhccCCCCcCCCC
Q 005045 614 FSIHMFVSMALPDHVMDILDPSMPLDEENDEEQIEEVIEEKEMMIHIDLEVNTKNKLEECFVSVLRIGLMCSTTSPRERI 693 (717)
Q Consensus 614 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~cl~~~p~~Rp 693 (717)
........ .... .+..++..+.+++.+||+.+|++||
T Consensus 229 --~~~~~~~~--------~~~~---------------------------------~~~~~~~~l~~li~~~l~~dp~~Rp 265 (291)
T 1xbb_A 229 --VTAMLEKG--------ERMG---------------------------------CPAGCPREMYDLMNLCWTYDVENRP 265 (291)
T ss_dssp --HHHHHHTT--------CCCC---------------------------------CCTTCCHHHHHHHHHHTCSSTTTSC
T ss_pred --HHHHHHcC--------CCCC---------------------------------CCCCCCHHHHHHHHHHcCCChhhCc
Confidence 11111100 0000 0112356788999999999999999
Q ss_pred CHHHHHHHHHHHHHHHHhhhh
Q 005045 694 AMNVVVNNLKTIRNCFLEFKK 714 (717)
Q Consensus 694 s~~eil~~l~~i~~~~~~~~~ 714 (717)
|+.|+++.|+.+.........
T Consensus 266 s~~~l~~~L~~~~~~~~~~~~ 286 (291)
T 1xbb_A 266 GFAAVELRLRNYYYDVVNEGH 286 (291)
T ss_dssp CHHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHhhccc
Confidence 999999999999877765543
No 165
>1mqb_A Ephrin type-A receptor 2; tyrosine protein kinase, transferase; HET: ANP; 2.30A {Homo sapiens} SCOP: d.144.1.7
Probab=100.00 E-value=1.9e-38 Score=332.00 Aligned_cols=267 Identities=25% Similarity=0.444 Sum_probs=201.8
Q ss_pred ccccccccccccCcccccceEEEEeC-C----CchhhhHHhHhh-hhhHHHHHHHHHHHHhcCCCCceeEEEEeeccccC
Q 005045 386 KSTDNFSKENLIGTGSFGSVYKGTLG-D----GTIVAIKVLKLQ-QQGALKSFIDECNALKSTRHRNILRVITACSSVDL 459 (717)
Q Consensus 386 ~~~~~y~~~~~ig~g~~g~v~~~~~~-~----~~~vavK~~~~~-~~~~~~~~~~e~~~l~~l~h~ni~~~~~~~~~~~~ 459 (717)
....+|++.+.||+|+||.||+|.+. + +..||+|.+... .......+.+|++++++++||||+++++++
T Consensus 41 i~~~~~~~~~~lG~G~~g~Vy~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~----- 115 (333)
T 1mqb_A 41 IHPSCVTRQKVIGAGEFGEVYKGMLKTSSGKKEVPVAIKTLKAGYTEKQRVDFLGEAGIMGQFSHHNIIRLEGVI----- 115 (333)
T ss_dssp CCTTTEEEEEEEEECSSSEEEEEEEEC---CCEEEEEEEEECTTCCHHHHHHHHHHHHHHHTCCCTTBCCEEEEE-----
T ss_pred CChHHhhcccEEecCCCeEEEEEEEecCCCCccccEEEEEcCCCCCHHHHHHHHHHHHHHHhCCCCCCCcEEEEE-----
Confidence 34678999999999999999999854 2 235999998754 233456788999999999999999999995
Q ss_pred CCCceEEEEEecCCCCChhhhccCCCCCcccccccCHHHHHHHHHHHHHHHHHHHhcCCCCeeecCCCCCCEEeCCCCce
Q 005045 460 EGNDFKALVFEFMSNGNLDQWLHPSPAEHYQFKKLSVIQRLNIAIDVASALDYLHHHCDTPIAHCDLKPSNVLLDKDMTA 539 (717)
Q Consensus 460 ~~~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~dlkp~NIll~~~~~~ 539 (717)
...+..++||||+++++|.+++.... ..+++..+..++.||+.||+|||+. +|+||||||+||+++.++.+
T Consensus 116 ~~~~~~~lv~e~~~~~~L~~~l~~~~------~~~~~~~~~~i~~qi~~aL~~LH~~---~ivH~Dikp~NIl~~~~~~~ 186 (333)
T 1mqb_A 116 SKYKPMMIITEYMENGALDKFLREKD------GEFSVLQLVGMLRGIAAGMKYLANM---NYVHRDLAARNILVNSNLVC 186 (333)
T ss_dssp CSSSSEEEEEECCTTEEHHHHHHHTT------TCSCHHHHHHHHHHHHHHHHHHHHT---TCCCSCCCGGGEEECTTCCE
T ss_pred ecCCCcEEEEeCCCCCcHHHHHHhCC------CCCCHHHHHHHHHHHHHHHHHHHhC---CeeCCCCChheEEECCCCcE
Confidence 44568999999999999999987532 5689999999999999999999998 99999999999999999999
Q ss_pred EEeeeccchhcccccCCCCCCcceeecccccccccCCCccC-CCCCcccchhhHHHHHHHHHh-CCCCCCCCCCCchhhh
Q 005045 540 HVGDFGLAKFLFEISDNPSKNQTVSIGLKGSIGYIPPEHMN-GQVSILGDIYSYGILLLEMFT-GKRPTGDMFKDDFSIH 617 (717)
Q Consensus 540 kl~Dfg~~~~~~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~-~~~~~~sDvwslG~vl~ellt-g~~p~~~~~~~~~~~~ 617 (717)
||+|||.+........ .........++..|+|||++. +.++.++|||||||++|+|++ |..||....... ..
T Consensus 187 kl~Dfg~~~~~~~~~~----~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~ellt~g~~pf~~~~~~~--~~ 260 (333)
T 1mqb_A 187 KVSDFGLSRVLEDDPE----ATYTTSGGKIPIRWTAPEAISYRKFTSASDVWSFGIVMWEVMTYGERPYWELSNHE--VM 260 (333)
T ss_dssp EECCCCC---------------------CCCGGGSCHHHHHSCCCCHHHHHHHHHHHHHHHHTTSCCTTTTCCHHH--HH
T ss_pred EECCCCcchhhccccc----cccccCCCCccccccCchhcccCCCCchhhhHHHHHHHHHHHcCCCCCcccCCHHH--HH
Confidence 9999999987532111 111112234677899999965 458999999999999999999 999996542211 11
Q ss_pred HHHHhcCChhhhhhcCCCCCCCCCCcHHHHHHHHHHHHHHhhhhhhhcchhhhHHHHHHHHHHhhccCCCCcCCCCCHHH
Q 005045 618 MFVSMALPDHVMDILDPSMPLDEENDEEQIEEVIEEKEMMIHIDLEVNTKNKLEECFVSVLRIGLMCSTTSPRERIAMNV 697 (717)
Q Consensus 618 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~cl~~~p~~Rps~~e 697 (717)
..+.. .. ..+ .+..++..+.+++.+||+.+|++|||+.|
T Consensus 261 ~~~~~--------~~--~~~-------------------------------~~~~~~~~l~~li~~~l~~~p~~Rps~~~ 299 (333)
T 1mqb_A 261 KAIND--------GF--RLP-------------------------------TPMDCPSAIYQLMMQCWQQERARRPKFAD 299 (333)
T ss_dssp HHHHT--------TC--CCC-------------------------------CCTTCBHHHHHHHHHHTCSSTTTSCCHHH
T ss_pred HHHHC--------CC--cCC-------------------------------CcccCCHHHHHHHHHHcCCChhhCcCHHH
Confidence 11100 00 000 01123566889999999999999999999
Q ss_pred HHHHHHHHHHHHHhhh
Q 005045 698 VVNNLKTIRNCFLEFK 713 (717)
Q Consensus 698 il~~l~~i~~~~~~~~ 713 (717)
+++.|+++.......+
T Consensus 300 l~~~L~~~~~~~~~~~ 315 (333)
T 1mqb_A 300 IVSILDKLIRAPDSLK 315 (333)
T ss_dssp HHHHHHHHHHSGGGGG
T ss_pred HHHHHHHHHhcchhhh
Confidence 9999999987655443
No 166
>3v8s_A RHO-associated protein kinase 1; dimerization, myosin, transferase, inhibitor, transf transferase inhibitor complex; HET: 0HD; 2.29A {Homo sapiens} PDB: 3twj_A* 3tv7_A* 2etr_A* 2esm_A* 2eto_A* 2etk_A* 3d9v_A* 3ncz_A* 3ndm_A* 2v55_A* 2f2u_A* 2h9v_A*
Probab=100.00 E-value=7.3e-39 Score=342.29 Aligned_cols=259 Identities=20% Similarity=0.264 Sum_probs=202.5
Q ss_pred cccccccccccccccccCcccccceEEEEeC-CCchhhhHHhHhhh---hhHHHHHHHHHHHHhcCCCCceeEEEEeecc
Q 005045 381 YSDISKSTDNFSKENLIGTGSFGSVYKGTLG-DGTIVAIKVLKLQQ---QGALKSFIDECNALKSTRHRNILRVITACSS 456 (717)
Q Consensus 381 ~~~~~~~~~~y~~~~~ig~g~~g~v~~~~~~-~~~~vavK~~~~~~---~~~~~~~~~e~~~l~~l~h~ni~~~~~~~~~ 456 (717)
+.++....++|++.++||+|+||.||+|+++ +++.||+|++.... ......+.+|+.+++.++||||+++++++
T Consensus 61 ~~~~~~~~~~y~~~~~LG~G~fG~V~~~~~~~~~~~~AiK~~~k~~~~~~~~~~~~~~E~~il~~l~hp~Iv~l~~~~-- 138 (410)
T 3v8s_A 61 IRDLRMKAEDYEVVKVIGRGAFGEVQLVRHKSTRKVYAMKLLSKFEMIKRSDSAFFWEERDIMAFANSPWVVQLFYAF-- 138 (410)
T ss_dssp HHHHSCCGGGEEEEEEEEECSSEEEEEEEETTTCCEEEEEEEEHHHHHHTCCCSTHHHHHHHHHHCCCTTBCCEEEEE--
T ss_pred HHhcccCccccEEEEEEEcCCCEEEEEEEECCCCcEEEEEEEehhhhhhhHHHHHHHHHHHHHHhCCCCCCCeEEEEE--
Confidence 4566778899999999999999999999976 78899999986432 22345678999999999999999999995
Q ss_pred ccCCCCceEEEEEecCCCCChhhhccCCCCCcccccccCHHHHHHHHHHHHHHHHHHHhcCCCCeeecCCCCCCEEeCCC
Q 005045 457 VDLEGNDFKALVFEFMSNGNLDQWLHPSPAEHYQFKKLSVIQRLNIAIDVASALDYLHHHCDTPIAHCDLKPSNVLLDKD 536 (717)
Q Consensus 457 ~~~~~~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~dlkp~NIll~~~ 536 (717)
.+.+..|+||||++||+|.+++.. ..+++..++.++.||+.||+|||+. +|+||||||+||+++.+
T Consensus 139 ---~~~~~~~lV~E~~~gg~L~~~l~~--------~~~~e~~~~~~~~qi~~aL~~LH~~---givHrDLKp~NILl~~~ 204 (410)
T 3v8s_A 139 ---QDDRYLYMVMEYMPGGDLVNLMSN--------YDVPEKWARFYTAEVVLALDAIHSM---GFIHRDVKPDNMLLDKS 204 (410)
T ss_dssp ---ECSSEEEEEECCCTTEEHHHHHHH--------CCCCHHHHHHHHHHHHHHHHHHHHT---TEECCCCSGGGEEECTT
T ss_pred ---EECCEEEEEEeCCCCCcHHHHHHc--------CCCCHHHHHHHHHHHHHHHHHHHHC---CeEeccCCHHHeeECCC
Confidence 445689999999999999999863 3589999999999999999999998 99999999999999999
Q ss_pred CceEEeeeccchhcccccCCCCCCcceeecccccccccCCCccCCC-----CCcccchhhHHHHHHHHHhCCCCCCCCCC
Q 005045 537 MTAHVGDFGLAKFLFEISDNPSKNQTVSIGLKGSIGYIPPEHMNGQ-----VSILGDIYSYGILLLEMFTGKRPTGDMFK 611 (717)
Q Consensus 537 ~~~kl~Dfg~~~~~~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~-----~~~~sDvwslG~vl~elltg~~p~~~~~~ 611 (717)
|.+||+|||++..... ..........||+.|+|||++.+. ++.++|||||||++|||++|..||.....
T Consensus 205 g~ikL~DFG~a~~~~~------~~~~~~~~~~gt~~Y~APE~l~~~~~~~~~~~~~DiwSlGvilyell~G~~Pf~~~~~ 278 (410)
T 3v8s_A 205 GHLKLADFGTCMKMNK------EGMVRCDTAVGTPDYISPEVLKSQGGDGYYGRECDWWSVGVFLYEMLVGDTPFYADSL 278 (410)
T ss_dssp SCEEECCCTTCEECCT------TSEEECCSCCSCGGGCCHHHHHTTTTTCEEETHHHHHHHHHHHHHHHHSSCTTCCSSH
T ss_pred CCEEEeccceeEeecc------CCcccccCCcCCccccCHHHhhccCCCcCCCCcceEecchHHHHHHHhCCCCCCCCCh
Confidence 9999999999976521 111223356799999999996442 67899999999999999999999975321
Q ss_pred CchhhhHHHHhcCChhhhhhcCCCCCCCCCCcHHHHHHHHHHHHHHhhhhhhhcchhhhHHHHHHHHHHhhccCCCCcCC
Q 005045 612 DDFSIHMFVSMALPDHVMDILDPSMPLDEENDEEQIEEVIEEKEMMIHIDLEVNTKNKLEECFVSVLRIGLMCSTTSPRE 691 (717)
Q Consensus 612 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~cl~~~p~~ 691 (717)
... ....... ......+ .....+..+.+++.+||+.+|.+
T Consensus 279 ~~~-~~~i~~~--------~~~~~~p-------------------------------~~~~~s~~~~~li~~lL~~~~~r 318 (410)
T 3v8s_A 279 VGT-YSKIMNH--------KNSLTFP-------------------------------DDNDISKEAKNLICAFLTDREVR 318 (410)
T ss_dssp HHH-HHHHHTH--------HHHCCCC-------------------------------TTCCCCHHHHHHHHHHSSCGGGC
T ss_pred hhH-HHHHHhc--------cccccCC-------------------------------CcccccHHHHHHHHHHccChhhh
Confidence 110 0000000 0000000 00112456789999999999988
Q ss_pred --CCCHHHHHHH
Q 005045 692 --RIAMNVVVNN 701 (717)
Q Consensus 692 --Rps~~eil~~ 701 (717)
||+++||++.
T Consensus 319 lgR~~~~ei~~H 330 (410)
T 3v8s_A 319 LGRNGVEEIKRH 330 (410)
T ss_dssp TTSSCHHHHHTS
T ss_pred CCCCCHHHHhcC
Confidence 9999999863
No 167
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=100.00 E-value=3.9e-37 Score=329.87 Aligned_cols=309 Identities=17% Similarity=0.169 Sum_probs=275.6
Q ss_pred eecEEEcCCCcCcCCCCcCCcCCCCCCEEECCCCcccccCCcCCCCCCCCCEEEccCccccccCCccccCCCCCCEEecc
Q 005045 11 MTQDLNLTYNYLSGKIPTNLSHCTELRSFEASVNDFVGQIPNQLSSLTKLEIIGLGGSNLTGNVPAWIGNFSSLKALSLA 90 (717)
Q Consensus 11 ~~~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~ 90 (717)
+++.|++++|.++...+..|..+++|++|+|++|.+++..+..|.++++|++|+|++|.+++..|..|.++++|++|+|+
T Consensus 46 ~l~~l~l~~~~l~~l~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~ 125 (390)
T 3o6n_A 46 NQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLE 125 (390)
T ss_dssp CCSEEEEESCEESEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECC
T ss_pred CceEEEecCCchhhCChhHhcccccCcEEECCCCcccccChhhccCCCCcCEEECCCCCCCcCCHHHhcCCCCCCEEECC
Confidence 78999999999996656668999999999999999998888899999999999999999998888889999999999999
Q ss_pred CCcCcccCChhhhccCCCCeEeccCCCCCCCCCccccCCCCccEEEcccCcccccCCcccccCCCCcceeeccccccccc
Q 005045 91 WNNLRGSIPNELGQLSGLGFFTLYGNFISGIIPSSIYNISSIYYFSVTQNQLHGQLPTDVGLTLPNLKIFAGAVNYFTGS 170 (717)
Q Consensus 91 ~n~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~~l~~~~~~~l~~L~~L~l~~n~l~~~ 170 (717)
+|+++...+..|.++++|++|+|++|.++++.+..|.++++|++|++++|+++ .++ ...+++|+.|++++|.+.+.
T Consensus 126 ~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~-~~~---~~~l~~L~~L~l~~n~l~~~ 201 (390)
T 3o6n_A 126 RNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLT-HVD---LSLIPSLFHANVSYNLLSTL 201 (390)
T ss_dssp SSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTSSCTTCCEEECCSSCCS-BCC---GGGCTTCSEEECCSSCCSEE
T ss_pred CCccCcCCHHHhcCCCCCcEEECCCCccCccChhhccCCCCCCEEECCCCcCC-ccc---cccccccceeeccccccccc
Confidence 99999666666899999999999999999888999999999999999999998 554 33679999999999998853
Q ss_pred CCccCCCCCCCCEEeccCccccccCCCCccCCCCCCeeeccccccCCcccCchhhhhhhccCCCCCEEEeecCcccCcCc
Q 005045 171 IPVSLSNASNLQVLDFAENGLTGTIPGNFGSLKDLVRLNFDQNELGSREIGDLNFLKFLANCTSLEVLGLARNSFGGEMP 250 (717)
Q Consensus 171 ~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~~~p 250 (717)
...++|++|++++|.++.. |.. ..++|+.|++++|.++.. ..+..+++|++|++++|.+++..|
T Consensus 202 -----~~~~~L~~L~l~~n~l~~~-~~~--~~~~L~~L~l~~n~l~~~--------~~l~~l~~L~~L~Ls~n~l~~~~~ 265 (390)
T 3o6n_A 202 -----AIPIAVEELDASHNSINVV-RGP--VNVELTILKLQHNNLTDT--------AWLLNYPGLVEVDLSYNELEKIMY 265 (390)
T ss_dssp -----ECCSSCSEEECCSSCCCEE-ECC--CCSSCCEEECCSSCCCCC--------GGGGGCTTCSEEECCSSCCCEEES
T ss_pred -----CCCCcceEEECCCCeeeec-ccc--ccccccEEECCCCCCccc--------HHHcCCCCccEEECCCCcCCCcCh
Confidence 3456899999999999954 443 357999999999999875 368899999999999999997778
Q ss_pred hhhhhccccccEEecCCCccCCCCCccccCCCCCCEEEccCCcCccccchhhhcCCCCCeEEcccCcCCCCCCccccccc
Q 005045 251 ISIANLSTHLRRLTMGENLMHGNIPVGIGNLVNLNLLGLEGNNLSGSVPEVIGRLNKLEGLGLNVNKFSGLIPSSLGNLT 330 (717)
Q Consensus 251 ~~~~~~~~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~ 330 (717)
..+..+ ++|++|++++|.+++ ++..+..+++|+.|+|++|+++ .+|..+..+++|++|+|++|+++... +..++
T Consensus 266 ~~~~~l-~~L~~L~L~~n~l~~-~~~~~~~l~~L~~L~L~~n~l~-~~~~~~~~l~~L~~L~L~~N~i~~~~---~~~~~ 339 (390)
T 3o6n_A 266 HPFVKM-QRLERLYISNNRLVA-LNLYGQPIPTLKVLDLSHNHLL-HVERNQPQFDRLENLYLDHNSIVTLK---LSTHH 339 (390)
T ss_dssp GGGTTC-SSCCEEECCSSCCCE-EECSSSCCTTCCEEECCSSCCC-CCGGGHHHHTTCSEEECCSSCCCCCC---CCTTC
T ss_pred hHcccc-ccCCEEECCCCcCcc-cCcccCCCCCCCEEECCCCcce-ecCccccccCcCCEEECCCCccceeC---chhhc
Confidence 888888 599999999999985 5677788999999999999999 67778999999999999999999763 67889
Q ss_pred ccceeeccccccccc
Q 005045 331 ILTRLWMEENRLEGS 345 (717)
Q Consensus 331 ~L~~L~L~~N~l~~~ 345 (717)
+|+.|+|++|++.+.
T Consensus 340 ~L~~L~l~~N~~~~~ 354 (390)
T 3o6n_A 340 TLKNLTLSHNDWDCN 354 (390)
T ss_dssp CCSEEECCSSCEEHH
T ss_pred cCCEEEcCCCCccch
Confidence 999999999999864
No 168
>3fdn_A Serine/threonine-protein kinase 6; aurora kinase inhibitors, virtual screening, X-RAY CO- crystal analysis, structure-based drug design (SBDD); HET: MMH; 1.90A {Homo sapiens} SCOP: d.144.1.7 PDB: 3k5u_A* 3m11_A* 2c6e_A* 1muo_A* 2bmc_A* 2j4z_A* 1ol6_A* 3up2_A* 3unz_A* 3uo5_A* 3uo6_A* 3uod_A* 3uoh_A* 3uoj_A* 3uok_A* 3uo4_A* 3uol_A* 3up7_A* 4dea_A* 4deb_A* ...
Probab=100.00 E-value=2e-38 Score=323.56 Aligned_cols=248 Identities=24% Similarity=0.349 Sum_probs=196.8
Q ss_pred ccccccccccccCcccccceEEEEeC-CCchhhhHHhHhhh---hhHHHHHHHHHHHHhcCCCCceeEEEEeeccccCCC
Q 005045 386 KSTDNFSKENLIGTGSFGSVYKGTLG-DGTIVAIKVLKLQQ---QGALKSFIDECNALKSTRHRNILRVITACSSVDLEG 461 (717)
Q Consensus 386 ~~~~~y~~~~~ig~g~~g~v~~~~~~-~~~~vavK~~~~~~---~~~~~~~~~e~~~l~~l~h~ni~~~~~~~~~~~~~~ 461 (717)
...++|++.+.||+|++|.||+|.+. +++.||+|++.... ......+.+|++++++++||||+++++++. +
T Consensus 6 ~~~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~-----~ 80 (279)
T 3fdn_A 6 WALEDFEIGRPLGKGKFGNVYLAREKQSKFILALKVLFKAQLEKAGVEHQLRREVEIQSHLRHPNILRLYGYFH-----D 80 (279)
T ss_dssp CCGGGEEEEEEEEECSSEEEEEEEETTTCCEEEEEEEEHHHHHHHTCHHHHHHHHHHHTTCCCTTBCCEEEEEE-----C
T ss_pred eecccEEEeeEEecCCCeEEEEEEEccCCcEEEEEEEeccccchhhHHHHHHHHHHHHHcCCCCCCcchhheEe-----c
Confidence 35679999999999999999999965 67889999885432 233567889999999999999999999953 4
Q ss_pred CceEEEEEecCCCCChhhhccCCCCCcccccccCHHHHHHHHHHHHHHHHHHHhcCCCCeeecCCCCCCEEeCCCCceEE
Q 005045 462 NDFKALVFEFMSNGNLDQWLHPSPAEHYQFKKLSVIQRLNIAIDVASALDYLHHHCDTPIAHCDLKPSNVLLDKDMTAHV 541 (717)
Q Consensus 462 ~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~dlkp~NIll~~~~~~kl 541 (717)
.+..++||||+++++|.+++... ..+++..+..++.||+.|++|||+. +|+||||||+||+++.++.+||
T Consensus 81 ~~~~~lv~e~~~~~~l~~~l~~~-------~~~~~~~~~~~~~qi~~~l~~LH~~---~i~H~dlkp~Nili~~~~~~~l 150 (279)
T 3fdn_A 81 ATRVYLILEYAPLGTVYRELQKL-------SKFDEQRTATYITELANALSYCHSK---RVIHRDIKPENLLLGSAGELKI 150 (279)
T ss_dssp SSEEEEEECCCTTEEHHHHHHHH-------SSCCHHHHHHHHHHHHHHHHHHHTT---TCEECCCCGGGEEECTTSCEEE
T ss_pred CCEEEEEEecCCCCcHHHHHHhc-------CCCCHHHHHHHHHHHHHHHHHHHhC---CEecccCChHhEEEcCCCCEEE
Confidence 55899999999999999998744 5689999999999999999999997 9999999999999999999999
Q ss_pred eeeccchhcccccCCCCCCcceeecccccccccCCCccCCC-CCcccchhhHHHHHHHHHhCCCCCCCCCCCchhhhHHH
Q 005045 542 GDFGLAKFLFEISDNPSKNQTVSIGLKGSIGYIPPEHMNGQ-VSILGDIYSYGILLLEMFTGKRPTGDMFKDDFSIHMFV 620 (717)
Q Consensus 542 ~Dfg~~~~~~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~-~~~~sDvwslG~vl~elltg~~p~~~~~~~~~~~~~~~ 620 (717)
+|||.+.... ........|++.|+|||.+.+. ++.++|||||||++|+|++|..||....... .....
T Consensus 151 ~Dfg~~~~~~---------~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~g~~p~~~~~~~~--~~~~~ 219 (279)
T 3fdn_A 151 ADFGWSVHAP---------SSRRTDLCGTLDYLPPEMIEGRMHDEKVDLWSLGVLCYEFLVGKPPFEANTYQE--TYKRI 219 (279)
T ss_dssp CSCCEESCC-----------------CCCCTTCCHHHHTTCCCCTTHHHHHHHHHHHHHHHSSCTTCCSSHHH--HHHHH
T ss_pred EeccccccCC---------cccccccCCCCCccCHhHhccCCCCccchhHhHHHHHHHHHHCCCCCCCCcHHH--HHHHH
Confidence 9999886531 1122345689999999997654 7899999999999999999999996532111 00000
Q ss_pred HhcCChhhhhhcCCCCCCCCCCcHHHHHHHHHHHHHHhhhhhhhcchhhhHHHHHHHHHHhhccCCCCcCCCCCHHHHHH
Q 005045 621 SMALPDHVMDILDPSMPLDEENDEEQIEEVIEEKEMMIHIDLEVNTKNKLEECFVSVLRIGLMCSTTSPRERIAMNVVVN 700 (717)
Q Consensus 621 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~cl~~~p~~Rps~~eil~ 700 (717)
.. ..... +..++..+.+++.+||+.+|++|||++|+++
T Consensus 220 ~~---------~~~~~---------------------------------~~~~~~~~~~li~~~l~~~p~~Rps~~e~l~ 257 (279)
T 3fdn_A 220 SR---------VEFTF---------------------------------PDFVTEGARDLISRLLKHNPSQRPMLREVLE 257 (279)
T ss_dssp HH---------TCCCC---------------------------------CTTSCHHHHHHHHHHCCSSGGGSCCHHHHHH
T ss_pred Hh---------CCCCC---------------------------------CCcCCHHHHHHHHHHhccChhhCCCHHHHhh
Confidence 00 00000 1112456788999999999999999999997
Q ss_pred H
Q 005045 701 N 701 (717)
Q Consensus 701 ~ 701 (717)
.
T Consensus 258 h 258 (279)
T 3fdn_A 258 H 258 (279)
T ss_dssp C
T ss_pred C
Confidence 5
No 169
>3a62_A Ribosomal protein S6 kinase beta-1; kinase domain, inactive, active, ribosomal S6 kinase, activation, alternative initiation, ATP-binding; HET: TPO STU; 2.35A {Homo sapiens} PDB: 3a61_A* 3a60_A*
Probab=100.00 E-value=1.1e-38 Score=332.72 Aligned_cols=249 Identities=24% Similarity=0.290 Sum_probs=189.2
Q ss_pred ccccccccccccCcccccceEEEEe----CCCchhhhHHhHhhh----hhHHHHHHHHHHHHhcCCCCceeEEEEeeccc
Q 005045 386 KSTDNFSKENLIGTGSFGSVYKGTL----GDGTIVAIKVLKLQQ----QGALKSFIDECNALKSTRHRNILRVITACSSV 457 (717)
Q Consensus 386 ~~~~~y~~~~~ig~g~~g~v~~~~~----~~~~~vavK~~~~~~----~~~~~~~~~e~~~l~~l~h~ni~~~~~~~~~~ 457 (717)
...++|++.+.||+|+||.||+|+. .+++.||+|++.... ......+.+|++++++++||||+++++++
T Consensus 14 ~~~~~y~~~~~lG~G~~g~V~~~~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~~E~~~l~~l~hp~iv~~~~~~--- 90 (327)
T 3a62_A 14 IRPECFELLRVLGKGGYGKVFQVRKVTGANTGKIFAMKVLKKAMIVRNAKDTAHTKAERNILEEVKHPFIVDLIYAF--- 90 (327)
T ss_dssp CCGGGEEEEEEEEEETTEEEEEEEECSSTTTTCEEEEEEECCC--------------HHHHHHHCCCTTBCCEEEEE---
T ss_pred CCHHHeEEEEEEEeCCCEEEEEEEEeccCCCCcEEEEEEEEHHHhhhhhhHHHHHHHHHHHHHhCCCCCccceeEEE---
Confidence 3467899999999999999999996 478899999986432 23346678899999999999999999995
Q ss_pred cCCCCceEEEEEecCCCCChhhhccCCCCCcccccccCHHHHHHHHHHHHHHHHHHHhcCCCCeeecCCCCCCEEeCCCC
Q 005045 458 DLEGNDFKALVFEFMSNGNLDQWLHPSPAEHYQFKKLSVIQRLNIAIDVASALDYLHHHCDTPIAHCDLKPSNVLLDKDM 537 (717)
Q Consensus 458 ~~~~~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~dlkp~NIll~~~~ 537 (717)
...+..|+||||+++++|.+++... ..+++..+..++.||+.||+|||+. +|+||||||+||+++.+|
T Consensus 91 --~~~~~~~lv~e~~~~~~L~~~l~~~-------~~~~~~~~~~~~~qi~~al~~lH~~---~ivH~Dlkp~Nill~~~~ 158 (327)
T 3a62_A 91 --QTGGKLYLILEYLSGGELFMQLERE-------GIFMEDTACFYLAEISMALGHLHQK---GIIYRDLKPENIMLNHQG 158 (327)
T ss_dssp --ECSSCEEEEEECCTTEEHHHHHHHH-------SSCCHHHHHHHHHHHHHHHHHHHHT---TCCCCCCCTTTEEECTTS
T ss_pred --EcCCEEEEEEeCCCCCcHHHHHHhC-------CCCCHHHHHHHHHHHHHHHHHHHhC---CEEcccCCHHHeEECCCC
Confidence 3456899999999999999998743 5689999999999999999999998 999999999999999999
Q ss_pred ceEEeeeccchhcccccCCCCCCcceeecccccccccCCCccCC-CCCcccchhhHHHHHHHHHhCCCCCCCCCCCchhh
Q 005045 538 TAHVGDFGLAKFLFEISDNPSKNQTVSIGLKGSIGYIPPEHMNG-QVSILGDIYSYGILLLEMFTGKRPTGDMFKDDFSI 616 (717)
Q Consensus 538 ~~kl~Dfg~~~~~~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~-~~~~~sDvwslG~vl~elltg~~p~~~~~~~~~~~ 616 (717)
.+||+|||.+...... ........||+.|+|||++.+ .++.++|||||||++|+|++|..||....... .
T Consensus 159 ~~kl~Dfg~~~~~~~~-------~~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~el~~g~~pf~~~~~~~--~ 229 (327)
T 3a62_A 159 HVKLTDFGLCKESIHD-------GTVTHTFCGTIEYMAPEILMRSGHNRAVDWWSLGALMYDMLTGAPPFTGENRKK--T 229 (327)
T ss_dssp CEEECCCSCC-----------------CTTSSCCTTSCHHHHTTSCCCTHHHHHHHHHHHHHHHHSSCSCCCSSHHH--H
T ss_pred cEEEEeCCcccccccC-------CccccccCCCcCccCHhhCcCCCCCCcccchhHHHHHHHHHHCCCCCCCCCHHH--H
Confidence 9999999998754211 112234568999999999655 58999999999999999999999997542211 0
Q ss_pred hHHHHhcCChhhhhhcCCCCCCCCCCcHHHHHHHHHHHHHHhhhhhhhcchhhhHHHHHHHHHHhhccCCCCcCCCC---
Q 005045 617 HMFVSMALPDHVMDILDPSMPLDEENDEEQIEEVIEEKEMMIHIDLEVNTKNKLEECFVSVLRIGLMCSTTSPRERI--- 693 (717)
Q Consensus 617 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~cl~~~p~~Rp--- 693 (717)
. ..+....... +...+..+.+++.+||+.+|++||
T Consensus 230 ~-----------~~i~~~~~~~-------------------------------p~~~~~~~~~li~~~L~~dp~~R~~~~ 267 (327)
T 3a62_A 230 I-----------DKILKCKLNL-------------------------------PPYLTQEARDLLKKLLKRNAASRLGAG 267 (327)
T ss_dssp H-----------HHHHHTCCCC-------------------------------CTTSCHHHHHHHHHHSCSCGGGSTTSS
T ss_pred H-----------HHHHhCCCCC-------------------------------CCCCCHHHHHHHHHHHhcCHhhccCCC
Confidence 0 0011111100 011245678899999999999999
Q ss_pred --CHHHHHH
Q 005045 694 --AMNVVVN 700 (717)
Q Consensus 694 --s~~eil~ 700 (717)
++.|+++
T Consensus 268 ~~~~~e~l~ 276 (327)
T 3a62_A 268 PGDAGEVQA 276 (327)
T ss_dssp TTTHHHHHH
T ss_pred CCCHHHHHc
Confidence 7778775
No 170
>2a2a_A Death-associated protein kinase 2; autoinhibition, transferase; 1.47A {Homo sapiens} PDB: 2cke_A* 1wmk_A 1z9x_A 2a27_A 2x0g_A 2xuu_A* 2w4k_A* 2xzs_A
Probab=100.00 E-value=4.2e-38 Score=327.96 Aligned_cols=252 Identities=23% Similarity=0.316 Sum_probs=200.4
Q ss_pred ccccccccccccCcccccceEEEEeC-CCchhhhHHhHhhhhh------HHHHHHHHHHHHhcCCCCceeEEEEeecccc
Q 005045 386 KSTDNFSKENLIGTGSFGSVYKGTLG-DGTIVAIKVLKLQQQG------ALKSFIDECNALKSTRHRNILRVITACSSVD 458 (717)
Q Consensus 386 ~~~~~y~~~~~ig~g~~g~v~~~~~~-~~~~vavK~~~~~~~~------~~~~~~~e~~~l~~l~h~ni~~~~~~~~~~~ 458 (717)
...++|++.+.||+|+||.||+|.++ +|+.||+|++...... ..+.+.+|+++++++.||||+++++++.
T Consensus 9 ~~~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~--- 85 (321)
T 2a2a_A 9 KVEDFYDIGEELGSGQFAIVKKCREKSTGLEYAAKFIKKRQSRASRRGVSREEIEREVSILRQVLHHNVITLHDVYE--- 85 (321)
T ss_dssp CHHHHEEEEEEEEECSSEEEEEEEETTTCCEEEEEEEEBCSSSSCSSSBCHHHHHHHHHHHHHCCCTTBCCEEEEEE---
T ss_pred hhhccEEEeeEeeecCCEEEEEEEECCCCeEEEEEEEecccccccccchhHHHHHHHHHHHHhCCCCCcceEEEEEe---
Confidence 45678999999999999999999965 7899999998754221 3567899999999999999999999953
Q ss_pred CCCCceEEEEEecCCCCChhhhccCCCCCcccccccCHHHHHHHHHHHHHHHHHHHhcCCCCeeecCCCCCCEEeCCCC-
Q 005045 459 LEGNDFKALVFEFMSNGNLDQWLHPSPAEHYQFKKLSVIQRLNIAIDVASALDYLHHHCDTPIAHCDLKPSNVLLDKDM- 537 (717)
Q Consensus 459 ~~~~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~dlkp~NIll~~~~- 537 (717)
+.+..++||||+++++|.+++... ..+++..+..++.||+.||+|||+. +|+||||||+||+++.++
T Consensus 86 --~~~~~~lv~e~~~~~~L~~~l~~~-------~~~~~~~~~~i~~qi~~aL~~lH~~---~ivH~dikp~NIl~~~~~~ 153 (321)
T 2a2a_A 86 --NRTDVVLILELVSGGELFDFLAQK-------ESLSEEEATSFIKQILDGVNYLHTK---KIAHFDLKPENIMLLDKNI 153 (321)
T ss_dssp --CSSEEEEEECCCCSCBHHHHHHTC-------SCEEHHHHHHHHHHHHHHHHHHHHT---TEECCCCSGGGEEESCTTS
T ss_pred --cCCEEEEEEEcCCCCcHHHHHHhc-------CCCCHHHHHHHHHHHHHHHHHHHhC---CeecCCCChHHEEEecCCC
Confidence 456899999999999999999754 5689999999999999999999998 999999999999999887
Q ss_pred ---ceEEeeeccchhcccccCCCCCCcceeecccccccccCCCccCC-CCCcccchhhHHHHHHHHHhCCCCCCCCCCCc
Q 005045 538 ---TAHVGDFGLAKFLFEISDNPSKNQTVSIGLKGSIGYIPPEHMNG-QVSILGDIYSYGILLLEMFTGKRPTGDMFKDD 613 (717)
Q Consensus 538 ---~~kl~Dfg~~~~~~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~-~~~~~sDvwslG~vl~elltg~~p~~~~~~~~ 613 (717)
.+||+|||.+...... .......|++.|+|||++.+ .++.++|||||||++|+|++|..||......+
T Consensus 154 ~~~~~kl~Dfg~~~~~~~~--------~~~~~~~gt~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~g~~pf~~~~~~~ 225 (321)
T 2a2a_A 154 PIPHIKLIDFGLAHEIEDG--------VEFKNIFGTPEFVAPEIVNYEPLGLEADMWSIGVITYILLSGASPFLGDTKQE 225 (321)
T ss_dssp SSCCEEECCCTTCEECCTT--------CCCCCCCSCGGGCCHHHHTTCCCCTHHHHHHHHHHHHHHHHSCCSSCCSSHHH
T ss_pred CcCCEEEccCccceecCcc--------ccccccCCCCCccCcccccCCCCCCccccHHHHHHHHHHHHCCCCCCCCCHHH
Confidence 7999999999765211 11233568999999999765 58999999999999999999999996542211
Q ss_pred hhhhHHHHhcCChhhhhhcCCCCCCCCCCcHHHHHHHHHHHHHHhhhhhhhcchhhhHHHHHHHHHHhhccCCCCcCCCC
Q 005045 614 FSIHMFVSMALPDHVMDILDPSMPLDEENDEEQIEEVIEEKEMMIHIDLEVNTKNKLEECFVSVLRIGLMCSTTSPRERI 693 (717)
Q Consensus 614 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~cl~~~p~~Rp 693 (717)
... .+......... .....++..+.+++.+||+.+|++||
T Consensus 226 --~~~-----------~i~~~~~~~~~---------------------------~~~~~~~~~~~~li~~~l~~dp~~Rp 265 (321)
T 2a2a_A 226 --TLA-----------NITSVSYDFDE---------------------------EFFSHTSELAKDFIRKLLVKETRKRL 265 (321)
T ss_dssp --HHH-----------HHHTTCCCCCH---------------------------HHHTTCCHHHHHHHHTTSCSSTTTSC
T ss_pred --HHH-----------HHHhcccccCh---------------------------hhhcccCHHHHHHHHHHcCCChhhCc
Confidence 100 11111100000 00112255678999999999999999
Q ss_pred CHHHHHH
Q 005045 694 AMNVVVN 700 (717)
Q Consensus 694 s~~eil~ 700 (717)
|+.|+++
T Consensus 266 s~~e~l~ 272 (321)
T 2a2a_A 266 TIQEALR 272 (321)
T ss_dssp CHHHHHH
T ss_pred CHHHHhc
Confidence 9999986
No 171
>3dls_A PAS domain-containing serine/threonine-protein KI; PAS kinase, PASK, protein kinase, drug discovery, ATP-bindin kinase, nucleotide-binding; HET: ADP; 2.30A {Homo sapiens}
Probab=100.00 E-value=1.4e-38 Score=332.94 Aligned_cols=242 Identities=22% Similarity=0.343 Sum_probs=196.7
Q ss_pred cccccccccccCcccccceEEEEeC-CCchhhhHHhHhhh--------hhHHHHHHHHHHHHhcCCCCceeEEEEeeccc
Q 005045 387 STDNFSKENLIGTGSFGSVYKGTLG-DGTIVAIKVLKLQQ--------QGALKSFIDECNALKSTRHRNILRVITACSSV 457 (717)
Q Consensus 387 ~~~~y~~~~~ig~g~~g~v~~~~~~-~~~~vavK~~~~~~--------~~~~~~~~~e~~~l~~l~h~ni~~~~~~~~~~ 457 (717)
..++|++.+.||+|+||.||+|+++ +++.||+|++.... ......+.+|++++++++||||+++++++
T Consensus 22 ~~~~y~~~~~lG~G~~g~Vy~a~~~~~~~~vavK~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~~Iv~~~~~~--- 98 (335)
T 3dls_A 22 YSQKYSTMSPLGSGAFGFVWTAVDKEKNKEVVVKFIKKEKVLEDCWIEDPKLGKVTLEIAILSRVEHANIIKVLDIF--- 98 (335)
T ss_dssp HHHHEEEEEECSSSSSCSEEEEEETTTTEEEEEEEEESTTSCTTSEEEETTTEEEEHHHHHHTTCCCTTBCCEEEEE---
T ss_pred cccceEEEeEEEecCCEEEEEEEECCCCcEEEEEEEehhhcccccccchHHHHHHHHHHHHHHhCCCCCEeeEEEEE---
Confidence 4579999999999999999999964 78999999987542 11334667899999999999999999995
Q ss_pred cCCCCceEEEEEecCCCC-ChhhhccCCCCCcccccccCHHHHHHHHHHHHHHHHHHHhcCCCCeeecCCCCCCEEeCCC
Q 005045 458 DLEGNDFKALVFEFMSNG-NLDQWLHPSPAEHYQFKKLSVIQRLNIAIDVASALDYLHHHCDTPIAHCDLKPSNVLLDKD 536 (717)
Q Consensus 458 ~~~~~~~~~lv~e~~~~~-~L~~~l~~~~~~~~~~~~~~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~dlkp~NIll~~~ 536 (717)
.+.+..++||||+.++ +|.+++... ..+++..+..++.||+.||+|||+. +|+||||||+||+++.+
T Consensus 99 --~~~~~~~lv~e~~~~g~~l~~~~~~~-------~~l~~~~~~~i~~qi~~~L~~LH~~---~ivH~Dlkp~NIll~~~ 166 (335)
T 3dls_A 99 --ENQGFFQLVMEKHGSGLDLFAFIDRH-------PRLDEPLASYIFRQLVSAVGYLRLK---DIIHRDIKDENIVIAED 166 (335)
T ss_dssp --ECSSEEEEEEECCTTSCBHHHHHHTC-------CCCCHHHHHHHHHHHHHHHHHHHHT---TEECSCCSGGGEEECTT
T ss_pred --eeCCEEEEEEEeCCCCccHHHHHHhc-------CCCCHHHHHHHHHHHHHHHHHHHhC---CeEEeccCHHHEEEcCC
Confidence 4456899999998666 999999765 5689999999999999999999998 99999999999999999
Q ss_pred CceEEeeeccchhcccccCCCCCCcceeecccccccccCCCccCCC-C-CcccchhhHHHHHHHHHhCCCCCCCCCCCch
Q 005045 537 MTAHVGDFGLAKFLFEISDNPSKNQTVSIGLKGSIGYIPPEHMNGQ-V-SILGDIYSYGILLLEMFTGKRPTGDMFKDDF 614 (717)
Q Consensus 537 ~~~kl~Dfg~~~~~~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~-~-~~~sDvwslG~vl~elltg~~p~~~~~~~~~ 614 (717)
+.+||+|||.+..... ........||+.|+|||++.+. + +.++|||||||++|+|++|..||.....
T Consensus 167 ~~~kL~Dfg~a~~~~~--------~~~~~~~~gt~~y~aPE~~~~~~~~~~~~DiwslG~il~el~~g~~pf~~~~~--- 235 (335)
T 3dls_A 167 FTIKLIDFGSAAYLER--------GKLFYTFCGTIEYCAPEVLMGNPYRGPELEMWSLGVTLYTLVFEENPFCELEE--- 235 (335)
T ss_dssp SCEEECCCTTCEECCT--------TCCBCEECSCGGGCCHHHHTTCCBCSHHHHHHHHHHHHHHHHHSSCSCSSGGG---
T ss_pred CcEEEeecccceECCC--------CCceeccCCCccccChhhhcCCCCCCCcccchhHHHHHHHHHhCCCchhhHHH---
Confidence 9999999999986521 1122335689999999997654 4 7899999999999999999999964211
Q ss_pred hhhHHHHhcCChhhhhhcCCCCCCCCCCcHHHHHHHHHHHHHHhhhhhhhcchhhhHHHHHHHHHHhhccCCCCcCCCCC
Q 005045 615 SIHMFVSMALPDHVMDILDPSMPLDEENDEEQIEEVIEEKEMMIHIDLEVNTKNKLEECFVSVLRIGLMCSTTSPRERIA 694 (717)
Q Consensus 615 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~cl~~~p~~Rps 694 (717)
......... ..++..+.+++.+||+.+|++|||
T Consensus 236 ----------------~~~~~~~~~-------------------------------~~~~~~l~~li~~~L~~dP~~Rps 268 (335)
T 3dls_A 236 ----------------TVEAAIHPP-------------------------------YLVSKELMSLVSGLLQPVPERRTT 268 (335)
T ss_dssp ----------------GTTTCCCCS-------------------------------SCCCHHHHHHHHHHTCSSGGGSCC
T ss_pred ----------------HHhhccCCC-------------------------------cccCHHHHHHHHHHccCChhhCcC
Confidence 011111100 001456789999999999999999
Q ss_pred HHHHHHH
Q 005045 695 MNVVVNN 701 (717)
Q Consensus 695 ~~eil~~ 701 (717)
+.|+++.
T Consensus 269 ~~ell~h 275 (335)
T 3dls_A 269 LEKLVTD 275 (335)
T ss_dssp HHHHHHC
T ss_pred HHHHhcC
Confidence 9999974
No 172
>2zmd_A Dual specificity protein kinase TTK; MPS1, T686A, ATP-binding, nucleotide-bindi phosphoprotein, serine/threonine-protein kinase; HET: 537 7PE; 2.88A {Homo sapiens} PDB: 2zmc_A*
Probab=100.00 E-value=9.5e-39 Score=341.17 Aligned_cols=254 Identities=25% Similarity=0.391 Sum_probs=195.8
Q ss_pred cccccccccccccCcccccceEEEEeCCCchhhhHHhHhh--hhhHHHHHHHHHHHHhcCC--CCceeEEEEeeccccCC
Q 005045 385 SKSTDNFSKENLIGTGSFGSVYKGTLGDGTIVAIKVLKLQ--QQGALKSFIDECNALKSTR--HRNILRVITACSSVDLE 460 (717)
Q Consensus 385 ~~~~~~y~~~~~ig~g~~g~v~~~~~~~~~~vavK~~~~~--~~~~~~~~~~e~~~l~~l~--h~ni~~~~~~~~~~~~~ 460 (717)
....++|++.+.||+|+||.||+|.+.+++.||+|++... .......+.+|+++++++. ||||+++++++.
T Consensus 52 ~~~~~~y~~~~~LG~G~fg~Vy~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~Ei~~l~~l~~~~~~iv~~~~~~~----- 126 (390)
T 2zmd_A 52 SVKGRIYSILKQIGSGGSSKVFQVLNEKKQIYAIKYVNLEEADNQTLDSYRNEIAYLNKLQQHSDKIIRLYDYEI----- 126 (390)
T ss_dssp EETTEEEEEEEEEECCSSEEEEEEECTTCCEEEEEEEECTTCCHHHHHHHHHHHHHHHHHTTTCTTBCCEEEEEE-----
T ss_pred cccCCceEEEEEEccCCCeEEEEEEcCCCCEEEEEEEecccccHHHHHHHHHHHHHHHHcccCCCeEEEEEEEEe-----
Confidence 3445679999999999999999999888999999998643 3345678899999999996 599999999854
Q ss_pred CCceEEEEEecCCCCChhhhccCCCCCcccccccCHHHHHHHHHHHHHHHHHHHhcCCCCeeecCCCCCCEEeCCCCceE
Q 005045 461 GNDFKALVFEFMSNGNLDQWLHPSPAEHYQFKKLSVIQRLNIAIDVASALDYLHHHCDTPIAHCDLKPSNVLLDKDMTAH 540 (717)
Q Consensus 461 ~~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~dlkp~NIll~~~~~~k 540 (717)
..+..++||| +.+++|.+++... ..+++..+..++.||+.||+|||+. +|+||||||+||+++ ++.+|
T Consensus 127 ~~~~~~lv~E-~~~~~L~~~l~~~-------~~~~~~~~~~i~~qi~~aL~~lH~~---~ivHrDlkp~NIll~-~~~~k 194 (390)
T 2zmd_A 127 TDQYIYMVME-CGNIDLNSWLKKK-------KSIDPWERKSYWKNMLEAVHTIHQH---GIVHSDLKPANFLIV-DGMLK 194 (390)
T ss_dssp CSSEEEEEEE-CCSEEHHHHHHHC-------SSCCHHHHHHHHHHHHHHHHHHHTT---TCCCCCCCGGGEEES-SSCEE
T ss_pred cCCEEEEEEe-cCCCCHHHHHHhc-------CCCCHHHHHHHHHHHHHHHHHHHHC---CeeecCCCHHHEEEE-CCeEE
Confidence 3457999999 5588999999754 4688999999999999999999998 999999999999995 68999
Q ss_pred EeeeccchhcccccCCCCCCcceeecccccccccCCCccCC------------CCCcccchhhHHHHHHHHHhCCCCCCC
Q 005045 541 VGDFGLAKFLFEISDNPSKNQTVSIGLKGSIGYIPPEHMNG------------QVSILGDIYSYGILLLEMFTGKRPTGD 608 (717)
Q Consensus 541 l~Dfg~~~~~~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~------------~~~~~sDvwslG~vl~elltg~~p~~~ 608 (717)
|+|||++....... .........||+.|+|||++.+ .++.++|||||||++|+|++|..||..
T Consensus 195 l~DFG~a~~~~~~~-----~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~~~~~~~~~~~DiwSlGvil~ell~G~~Pf~~ 269 (390)
T 2zmd_A 195 LIDFGIANQMQPDT-----TSVVKDSQVGAVNYMPPEAIKDMSSSRENGKSKSKISPKSDVWSLGCILYYMTYGKTPFQQ 269 (390)
T ss_dssp ECCCSSSCCC--------------CCSCCCGGGCCHHHHHCC------------CCHHHHHHHHHHHHHHHHHSSCTTTT
T ss_pred EEecCccccccCCC-----ccccCCCCCcCCCccChHHhhhccccccccccccCCCChhhHHHHHHHHHHHHHCCCcchh
Confidence 99999998652211 1112234569999999999653 588999999999999999999999965
Q ss_pred CCCCchhhhHHHHhcCChhhhhhcCCCCCCCCCCcHHHHHHHHHHHHHHhhhhhhhcchhhhHHHHHHHHHHhhccCCCC
Q 005045 609 MFKDDFSIHMFVSMALPDHVMDILDPSMPLDEENDEEQIEEVIEEKEMMIHIDLEVNTKNKLEECFVSVLRIGLMCSTTS 688 (717)
Q Consensus 609 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~cl~~~ 688 (717)
....... +..++++...... +..++..+.+++.+||+.+
T Consensus 270 ~~~~~~~------------~~~~~~~~~~~~~-----------------------------~~~~~~~~~~li~~~L~~d 308 (390)
T 2zmd_A 270 IINQISK------------LHAIIDPNHEIEF-----------------------------PDIPEKDLQDVLKCCLKRD 308 (390)
T ss_dssp CCCHHHH------------HHHHHCTTSCCCC-----------------------------CCCSCHHHHHHHHHHTCSS
T ss_pred hhHHHHH------------HHHHhCccccCCC-----------------------------CccchHHHHHHHHHHcccC
Confidence 4221111 1122222211110 0001345788999999999
Q ss_pred cCCCCCHHHHHHH
Q 005045 689 PRERIAMNVVVNN 701 (717)
Q Consensus 689 p~~Rps~~eil~~ 701 (717)
|++|||+.|+++.
T Consensus 309 P~~Rps~~ell~h 321 (390)
T 2zmd_A 309 PKQRISIPELLAH 321 (390)
T ss_dssp TTTSCCHHHHHTS
T ss_pred hhhCCCHHHHhhC
Confidence 9999999999864
No 173
>3ttj_A Mitogen-activated protein kinase 10; JNK3, protein kinase in transferase-transferase inhibitor complex; HET: JBI; 2.10A {Homo sapiens} PDB: 3tti_A* 1jnk_A*
Probab=100.00 E-value=3e-38 Score=344.36 Aligned_cols=203 Identities=27% Similarity=0.266 Sum_probs=166.7
Q ss_pred cccccccccccCcccccceEEEEeC-CCchhhhHHhHhh--hhhHHHHHHHHHHHHhcCCCCceeEEEEeecccc-CCCC
Q 005045 387 STDNFSKENLIGTGSFGSVYKGTLG-DGTIVAIKVLKLQ--QQGALKSFIDECNALKSTRHRNILRVITACSSVD-LEGN 462 (717)
Q Consensus 387 ~~~~y~~~~~ig~g~~g~v~~~~~~-~~~~vavK~~~~~--~~~~~~~~~~e~~~l~~l~h~ni~~~~~~~~~~~-~~~~ 462 (717)
..++|++.++||+|+||.||+|.+. +++.||+|++... .....+++.+|+++++.++||||+++++++.... .++.
T Consensus 60 ~~~~y~~~~~lG~G~~g~V~~a~~~~~~~~vAiK~~~~~~~~~~~~~~~~~E~~~l~~l~hpnIv~l~~~~~~~~~~~~~ 139 (464)
T 3ttj_A 60 VLKRYQNLKPIGSGAQGIVCAAYDAVLDRNVAIKKLSRPFQNQTHAKRAYRELVLMKCVNHKNIISLLNVFTPQKTLEEF 139 (464)
T ss_dssp EETTEEEEEEEEECSSCEEEEEEETTTTEEEEEEEEESGGGSHHHHHHHHHHHHHHHHCCCTTBCCCSEEECSCCSTTTC
T ss_pred ecCCeEEEEEeecCCCeEEEEEEECCCCCEEEEEEECccccChHHHHHHHHHHHHHHhCCCCCCCcEEEEEccCCccccC
Confidence 4678999999999999999999965 7999999998643 3345678889999999999999999999875432 2344
Q ss_pred ceEEEEEecCCCCChhhhccCCCCCcccccccCHHHHHHHHHHHHHHHHHHHhcCCCCeeecCCCCCCEEeCCCCceEEe
Q 005045 463 DFKALVFEFMSNGNLDQWLHPSPAEHYQFKKLSVIQRLNIAIDVASALDYLHHHCDTPIAHCDLKPSNVLLDKDMTAHVG 542 (717)
Q Consensus 463 ~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~dlkp~NIll~~~~~~kl~ 542 (717)
...|+||||+++ ++.+.+. ..+++..+..++.||+.||+|||+. +|+||||||+||+++.++.+||+
T Consensus 140 ~~~~lv~E~~~~-~l~~~~~---------~~l~~~~~~~~~~qil~aL~~lH~~---~iiHrDlkp~NIll~~~~~~kl~ 206 (464)
T 3ttj_A 140 QDVYLVMELMDA-NLCQVIQ---------MELDHERMSYLLYQMLCGIKHLHSA---GIIHRDLKPSNIVVKSDCTLKIL 206 (464)
T ss_dssp CEEEEEEECCSE-EHHHHHT---------SCCCHHHHHHHHHHHHHHHHHHHHT---TCCCCCCCGGGEEECTTSCEEEC
T ss_pred CeEEEEEeCCCC-CHHHHHh---------hcCCHHHHHHHHHHHHHHHHHHHHC---CcccCCCChHhEEEeCCCCEEEE
Confidence 578999999965 5766664 3488999999999999999999998 99999999999999999999999
Q ss_pred eeccchhcccccCCCCCCcceeecccccccccCCCccCC-CCCcccchhhHHHHHHHHHhCCCCCCCCC
Q 005045 543 DFGLAKFLFEISDNPSKNQTVSIGLKGSIGYIPPEHMNG-QVSILGDIYSYGILLLEMFTGKRPTGDMF 610 (717)
Q Consensus 543 Dfg~~~~~~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~-~~~~~sDvwslG~vl~elltg~~p~~~~~ 610 (717)
|||+++.... ........||+.|+|||++.+ .++.++||||+||++|+|++|+.||.+..
T Consensus 207 DFG~a~~~~~--------~~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwSlG~il~ell~g~~pF~g~~ 267 (464)
T 3ttj_A 207 DFGLARTAGT--------SFMMTPYVVTRYYRAPEVILGMGYKENVDIWSVGCIMGEMVRHKILFPGRD 267 (464)
T ss_dssp CCCCC-------------CCCC----CCCTTCCHHHHTTCCCCTTHHHHHHHHHHHHHHHSSCSSCCSS
T ss_pred EEEeeeecCC--------CcccCCCcccccccCHHHHcCCCCCHHHHHHHHHHHHHHHHhCCCCCCCCC
Confidence 9999986521 112234678999999999655 58999999999999999999999997643
No 174
>4agu_A Cyclin-dependent kinase-like 1; transferase, phospho-mimetic; HET: D15; 2.40A {Homo sapiens}
Probab=100.00 E-value=1.5e-38 Score=330.08 Aligned_cols=271 Identities=23% Similarity=0.275 Sum_probs=196.7
Q ss_pred ccccccccccCcccccceEEEEeC-CCchhhhHHhHhhh--hhHHHHHHHHHHHHhcCCCCceeEEEEeeccccCCCCce
Q 005045 388 TDNFSKENLIGTGSFGSVYKGTLG-DGTIVAIKVLKLQQ--QGALKSFIDECNALKSTRHRNILRVITACSSVDLEGNDF 464 (717)
Q Consensus 388 ~~~y~~~~~ig~g~~g~v~~~~~~-~~~~vavK~~~~~~--~~~~~~~~~e~~~l~~l~h~ni~~~~~~~~~~~~~~~~~ 464 (717)
.++|++.++||+|++|.||+|.+. +|+.||+|++.... ....+.+.+|++++++++||||+++++++. ..+.
T Consensus 2 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~h~~i~~~~~~~~-----~~~~ 76 (311)
T 4agu_A 2 MEKYEKIGKIGEGSYGVVFKCRNRDTGQIVAIKKFLESEDDPVIKKIALREIRMLKQLKHPNLVNLLEVFR-----RKRR 76 (311)
T ss_dssp -CCEEEEEEEEECSSEEEEEEEETTTCCEEEEEEECCCCC-HHHHHHHHHHHHHHHHCCCTTBCCEEEEEE-----ETTE
T ss_pred cccceEeeEEeecCCeEEEEEEeCCCCcEEEEEEeeccccchHHHHHHHHHHHHHHhCCCCCccchhheee-----cCCe
Confidence 368999999999999999999975 68999999875432 334577889999999999999999999954 4458
Q ss_pred EEEEEecCCCCChhhhccCCCCCcccccccCHHHHHHHHHHHHHHHHHHHhcCCCCeeecCCCCCCEEeCCCCceEEeee
Q 005045 465 KALVFEFMSNGNLDQWLHPSPAEHYQFKKLSVIQRLNIAIDVASALDYLHHHCDTPIAHCDLKPSNVLLDKDMTAHVGDF 544 (717)
Q Consensus 465 ~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~dlkp~NIll~~~~~~kl~Df 544 (717)
.++||||++++++.+++... ..+++..+..++.|++.||+|||+. ||+||||||+||+++.++.+||+||
T Consensus 77 ~~lv~e~~~~~~l~~~~~~~-------~~~~~~~~~~i~~~l~~~l~~lH~~---~ivH~dlkp~Nil~~~~~~~kl~Df 146 (311)
T 4agu_A 77 LHLVFEYCDHTVLHELDRYQ-------RGVPEHLVKSITWQTLQAVNFCHKH---NCIHRDVKPENILITKHSVIKLCDF 146 (311)
T ss_dssp EEEEEECCSEEHHHHHHHTS-------SCCCHHHHHHHHHHHHHHHHHHHHT---TEECCCCSGGGEEECTTSCEEECCC
T ss_pred EEEEEEeCCCchHHHHHhhh-------cCCCHHHHHHHHHHHHHHHHHHHHC---CCcCCCCChhhEEEcCCCCEEEeeC
Confidence 99999999999999888654 5689999999999999999999998 9999999999999999999999999
Q ss_pred ccchhcccccCCCCCCcceeecccccccccCCCccCC--CCCcccchhhHHHHHHHHHhCCCCCCCCCCCchhhhH-HHH
Q 005045 545 GLAKFLFEISDNPSKNQTVSIGLKGSIGYIPPEHMNG--QVSILGDIYSYGILLLEMFTGKRPTGDMFKDDFSIHM-FVS 621 (717)
Q Consensus 545 g~~~~~~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~--~~~~~sDvwslG~vl~elltg~~p~~~~~~~~~~~~~-~~~ 621 (717)
|.+...... ........++..|+|||++.+ .++.++|||||||++|+|++|..||......+..... ...
T Consensus 147 g~~~~~~~~-------~~~~~~~~~~~~y~aPE~~~~~~~~~~~~Di~slG~il~~l~~g~~p~~~~~~~~~~~~~~~~~ 219 (311)
T 4agu_A 147 GFARLLTGP-------SDYYDDEVATRWYRSPELLVGDTQYGPPVDVWAIGCVFAELLSGVPLWPGKSDVDQLYLIRKTL 219 (311)
T ss_dssp TTCEECC-------------------GGGCCHHHHHTCSCCCTHHHHHHHHHHHHHHHHSSCSCCCSSHHHHHHHHHHHH
T ss_pred CCchhccCc-------ccccCCCcCCccccChHHHhcCCCCCcchhhHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHHHh
Confidence 999865211 112233568999999999654 4799999999999999999999999765332211110 000
Q ss_pred hcCChhhhhh------cCCCCCCCCCCcHHHHHHHHHHHHHHhhhhhhhcchhhhHHHHHHHHHHhhccCCCCcCCCCCH
Q 005045 622 MALPDHVMDI------LDPSMPLDEENDEEQIEEVIEEKEMMIHIDLEVNTKNKLEECFVSVLRIGLMCSTTSPRERIAM 695 (717)
Q Consensus 622 ~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~cl~~~p~~Rps~ 695 (717)
.......... ........+.... ......++++..+.+++.+||+.+|++|||+
T Consensus 220 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------------------~~~~~~~~~~~~~~~li~~~L~~dP~~Rpt~ 279 (311)
T 4agu_A 220 GDLIPRHQQVFSTNQYFSGVKIPDPEDME--------------------PLELKFPNISYPALGLLKGCLHMDPTERLTC 279 (311)
T ss_dssp CSCCHHHHHHHHTCGGGTTCCCCCCSSCC--------------------CHHHHCTTCCHHHHHHHHHHCCSSTTTSCCH
T ss_pred cccccccccccccccccccCcCCCccccc--------------------hhhhhcccccHHHHHHHHHHccCChhhcCCH
Confidence 1111110000 0000000000000 0000112235668899999999999999999
Q ss_pred HHHHH
Q 005045 696 NVVVN 700 (717)
Q Consensus 696 ~eil~ 700 (717)
+|+++
T Consensus 280 ~ell~ 284 (311)
T 4agu_A 280 EQLLH 284 (311)
T ss_dssp HHHHT
T ss_pred HHHhc
Confidence 99985
No 175
>2i1m_A Macrophage colony-stimulating factor 1 receptor; kinase domain, kinase inhibitor complex, transferase; HET: 5CN; 1.80A {Homo sapiens} PDB: 3bea_A* 3lcd_A* 2i0y_A* 2i0v_A* 3dpk_A* 3krj_A* 3krl_A* 2ogv_A 3lco_A*
Probab=100.00 E-value=2.2e-38 Score=332.17 Aligned_cols=275 Identities=23% Similarity=0.329 Sum_probs=211.2
Q ss_pred cccccccccccccccCcccccceEEEEeC-CC-----chhhhHHhHhhh-hhHHHHHHHHHHHHhcC-CCCceeEEEEee
Q 005045 383 DISKSTDNFSKENLIGTGSFGSVYKGTLG-DG-----TIVAIKVLKLQQ-QGALKSFIDECNALKST-RHRNILRVITAC 454 (717)
Q Consensus 383 ~~~~~~~~y~~~~~ig~g~~g~v~~~~~~-~~-----~~vavK~~~~~~-~~~~~~~~~e~~~l~~l-~h~ni~~~~~~~ 454 (717)
.+....++|++.+.||+|+||.||.|.+. ++ +.||+|.+.... ....+.+.+|+++++++ +||||+++++++
T Consensus 40 ~~~~~~~~~~~~~~lG~G~~g~Vy~~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~~h~~iv~~~~~~ 119 (333)
T 2i1m_A 40 KWEFPRNNLQFGKTLGAGAFGKVVEATAFGLGKEDAVLKVAVKMLKSTAHADEKEALMSELKIMSHLGQHENIVNLLGAC 119 (333)
T ss_dssp GGBCCTTSEEEEEEEEECSSEEEEEEEETTCSSSCCCCEEEEEEECTTCCHHHHHHHHHHHHHHHHHCCCTTBCCEEEEE
T ss_pred cccCCHHHceeeeEeccCCCcceEEEEecCCCcccchhHHHHHhcccccChHHHHHHHHHHHHHHhhcCCCCeeeEEEEE
Confidence 45566789999999999999999999964 33 368999886542 34457789999999999 899999999995
Q ss_pred ccccCCCCceEEEEEecCCCCChhhhccCCCCC-------cccccccCHHHHHHHHHHHHHHHHHHHhcCCCCeeecCCC
Q 005045 455 SSVDLEGNDFKALVFEFMSNGNLDQWLHPSPAE-------HYQFKKLSVIQRLNIAIDVASALDYLHHHCDTPIAHCDLK 527 (717)
Q Consensus 455 ~~~~~~~~~~~~lv~e~~~~~~L~~~l~~~~~~-------~~~~~~~~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~dlk 527 (717)
. ..+..++||||+++++|.+++...... ......+++..+..++.||+.||+|||+. +|+|||||
T Consensus 120 ~-----~~~~~~lv~e~~~~g~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~qi~~~l~~lH~~---~ivH~Dlk 191 (333)
T 2i1m_A 120 T-----HGGPVLVITEYCCYGDLLNFLRRKSRVLETDPAFAIANSTASTRDLLHFSSQVAQGMAFLASK---NCIHRDVA 191 (333)
T ss_dssp C-----SSSSCEEEEECCTTEEHHHHHHHHHHHHSCC-------CCCCHHHHHHHHHHHHHHHHHHHHT---TEECSCCS
T ss_pred e-----cCCceEEEEecCCCCcHHHHHHHhcccccccccccccccccCHHHHHHHHHHHHHHHHHHhcC---CcccCCcc
Confidence 3 445789999999999999998642100 00014579999999999999999999998 99999999
Q ss_pred CCCEEeCCCCceEEeeeccchhcccccCCCCCCcceeecccccccccCCCccC-CCCCcccchhhHHHHHHHHHh-CCCC
Q 005045 528 PSNVLLDKDMTAHVGDFGLAKFLFEISDNPSKNQTVSIGLKGSIGYIPPEHMN-GQVSILGDIYSYGILLLEMFT-GKRP 605 (717)
Q Consensus 528 p~NIll~~~~~~kl~Dfg~~~~~~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~-~~~~~~sDvwslG~vl~ellt-g~~p 605 (717)
|+||+++.++.+||+|||.+....... .........+++.|+|||++. +.++.++|||||||++|+|++ |..|
T Consensus 192 p~NIl~~~~~~~kl~Dfg~~~~~~~~~-----~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~el~t~g~~p 266 (333)
T 2i1m_A 192 ARNVLLTNGHVAKIGDFGLARDIMNDS-----NYIVKGNARLPVKWMAPESIFDCVYTVQSDVWSYGILLWEIFSLGLNP 266 (333)
T ss_dssp GGGCEEEGGGEEEBCCCGGGCCGGGCT-----TSEECSSCEECGGGSCHHHHHHCCCCHHHHHHHHHHHHHHHTTTSCCS
T ss_pred cceEEECCCCeEEECcccccccccccc-----ceeecCCCCCCccccCHHHhccCCCChHHHHHHHHHHHHHHHcCCCCC
Confidence 999999999999999999998653221 112223345788999999954 468999999999999999999 9999
Q ss_pred CCCCCCCchhhhHHHHhcCChhhhhhcCCCCCCCCCCcHHHHHHHHHHHHHHhhhhhhhcchhhhHHHHHHHHHHhhccC
Q 005045 606 TGDMFKDDFSIHMFVSMALPDHVMDILDPSMPLDEENDEEQIEEVIEEKEMMIHIDLEVNTKNKLEECFVSVLRIGLMCS 685 (717)
Q Consensus 606 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~cl 685 (717)
|........ ........ ..... +..++..+.+++.+||
T Consensus 267 ~~~~~~~~~-~~~~~~~~--------~~~~~---------------------------------~~~~~~~l~~li~~~l 304 (333)
T 2i1m_A 267 YPGILVNSK-FYKLVKDG--------YQMAQ---------------------------------PAFAPKNIYSIMQACW 304 (333)
T ss_dssp STTCCSSHH-HHHHHHHT--------CCCCC---------------------------------CTTCCHHHHHHHHHHT
T ss_pred CcccchhHH-HHHHHhcC--------CCCCC---------------------------------CCCCCHHHHHHHHHHh
Confidence 976533221 11111110 00000 1112456789999999
Q ss_pred CCCcCCCCCHHHHHHHHHHHHHHHHhh
Q 005045 686 TTSPRERIAMNVVVNNLKTIRNCFLEF 712 (717)
Q Consensus 686 ~~~p~~Rps~~eil~~l~~i~~~~~~~ 712 (717)
+.+|++|||+.||++.|+++.++....
T Consensus 305 ~~~p~~Rps~~~l~~~L~~~~~~~~~~ 331 (333)
T 2i1m_A 305 ALEPTHRPTFQQICSFLQEQAQEDRRE 331 (333)
T ss_dssp CSSGGGSCCHHHHHHHHHHHHHHHHHH
T ss_pred ccChhhCcCHHHHHHHHHHHHHhhhcc
Confidence 999999999999999999998876554
No 176
>2buj_A Serine/threonine-protein kinase 16; transferase, ATP-binding, lipoprotein, myristate, PA phosphorylation; HET: STU; 2.6A {Homo sapiens}
Probab=100.00 E-value=1.4e-38 Score=331.16 Aligned_cols=283 Identities=20% Similarity=0.253 Sum_probs=211.0
Q ss_pred CCCcccccccccccccccccCcccccceEEEEe-CCCchhhhHHhHhhhhhHHHHHHHHHHHHhcCCCCceeEEEEeecc
Q 005045 378 GMSYSDISKSTDNFSKENLIGTGSFGSVYKGTL-GDGTIVAIKVLKLQQQGALKSFIDECNALKSTRHRNILRVITACSS 456 (717)
Q Consensus 378 ~~s~~~~~~~~~~y~~~~~ig~g~~g~v~~~~~-~~~~~vavK~~~~~~~~~~~~~~~e~~~l~~l~h~ni~~~~~~~~~ 456 (717)
+.+...+....++|++.+.||+|+||.||+|.. .+++.||+|++........+.+.+|+++++.++||||+++++++..
T Consensus 18 ~~~g~~~~i~~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~ 97 (317)
T 2buj_A 18 YFQGHMVIIDNKHYLFIQKLGEGGFSYVDLVEGLHDGHFYALKRILCHEQQDREEAQREADMHRLFNHPNILRLVAYCLR 97 (317)
T ss_dssp SEEEEEEEETTEEEEEEEEEEC--CEEEEEEEETTTCCEEEEEEEEESSHHHHHHHHHHHHHHHTCCCTTBCCCCEEEEE
T ss_pred eecccEEEECCeEEEEEEEecCCCCeEEEEEEecCCCcEEEEEEEecCCHHHHHHHHHHHHHHhhcCCCCeeeEEEEEEe
Confidence 444555566778999999999999999999996 4899999998876555567788999999999999999999998753
Q ss_pred ccCCCCceEEEEEecCCCCChhhhccCCCCCcccccccCHHHHHHHHHHHHHHHHHHHhcCCCCeeecCCCCCCEEeCCC
Q 005045 457 VDLEGNDFKALVFEFMSNGNLDQWLHPSPAEHYQFKKLSVIQRLNIAIDVASALDYLHHHCDTPIAHCDLKPSNVLLDKD 536 (717)
Q Consensus 457 ~~~~~~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~dlkp~NIll~~~ 536 (717)
. .......++||||+++++|.+++..... ....+++..+..++.||+.||+|||+. +|+||||||+||+++.+
T Consensus 98 ~-~~~~~~~~lv~e~~~~~~L~~~l~~~~~---~~~~~~~~~~~~i~~qi~~~L~~LH~~---~ivH~dlkp~NIl~~~~ 170 (317)
T 2buj_A 98 E-RGAKHEAWLLLPFFKRGTLWNEIERLKD---KGNFLTEDQILWLLLGICRGLEAIHAK---GYAHRDLKPTNILLGDE 170 (317)
T ss_dssp E-ETTEEEEEEEEECCTTCBHHHHHHHHHT---TTCCCCHHHHHHHHHHHHHHHHHHHHT---TEECCCCCGGGEEECTT
T ss_pred c-cCCCceeEEEEEeCCCCcHHHHHHHHHh---cCCCCCHHHHHHHHHHHHHHHHHHHhC---CcccCCCCHHHEEEcCC
Confidence 2 1234578999999999999998864211 115689999999999999999999998 99999999999999999
Q ss_pred CceEEeeeccchhcccccCCCCC--CcceeecccccccccCCCccCCC----CCcccchhhHHHHHHHHHhCCCCCCCCC
Q 005045 537 MTAHVGDFGLAKFLFEISDNPSK--NQTVSIGLKGSIGYIPPEHMNGQ----VSILGDIYSYGILLLEMFTGKRPTGDMF 610 (717)
Q Consensus 537 ~~~kl~Dfg~~~~~~~~~~~~~~--~~~~~~~~~~~~~y~aPE~~~~~----~~~~sDvwslG~vl~elltg~~p~~~~~ 610 (717)
+.+||+|||.+............ .........|++.|+|||++.+. ++.++|||||||++|+|++|..||....
T Consensus 171 ~~~kl~dfg~~~~~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~~~Di~slG~il~el~~g~~p~~~~~ 250 (317)
T 2buj_A 171 GQPVLMDLGSMNQACIHVEGSRQALTLQDWAAQRCTISYRAPELFSVQSHCVIDERTDVWSLGCVLYAMMFGEGPYDMVF 250 (317)
T ss_dssp SCEEECCCSSCEESCEEEESHHHHHHHHHHHHHHSCGGGCCGGGSSCCSEEEECTHHHHHHHHHHHHHHHHSSCTTHHHH
T ss_pred CCEEEEecCcchhcccccccccccccccccccccCCcccCCHhHhccCCCcCCCchhhHHHHHHHHHHHHhCCCChhhhh
Confidence 99999999988754111000000 00001123468999999997653 5899999999999999999999985421
Q ss_pred CCchhhhHHHHhcCChhhhhhcCCCCCCCCCCcHHHHHHHHHHHHHHhhhhhhhcchhhhHHHHHHHHHHhhccCCCCcC
Q 005045 611 KDDFSIHMFVSMALPDHVMDILDPSMPLDEENDEEQIEEVIEEKEMMIHIDLEVNTKNKLEECFVSVLRIGLMCSTTSPR 690 (717)
Q Consensus 611 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~cl~~~p~ 690 (717)
............. . ..+ ....++..+.+++.+||+.+|+
T Consensus 251 ~~~~~~~~~~~~~--------~--~~~-------------------------------~~~~~~~~l~~li~~~l~~dp~ 289 (317)
T 2buj_A 251 QKGDSVALAVQNQ--------L--SIP-------------------------------QSPRHSSALWQLLNSMMTVDPH 289 (317)
T ss_dssp HTTSCHHHHHHCC------------CC-------------------------------CCTTSCHHHHHHHHHHTCSSGG
T ss_pred cccchhhHHhhcc--------C--CCC-------------------------------ccccCCHHHHHHHHHHhhcChh
Confidence 1111111111000 0 000 0112255688999999999999
Q ss_pred CCCCHHHHHHHHHHHHHH
Q 005045 691 ERIAMNVVVNNLKTIRNC 708 (717)
Q Consensus 691 ~Rps~~eil~~l~~i~~~ 708 (717)
+|||+.|+++.|+.++..
T Consensus 290 ~Rps~~~ll~~L~~~~~~ 307 (317)
T 2buj_A 290 QRPHIPLLLSQLEALQPP 307 (317)
T ss_dssp GSCCHHHHHHHHHHTCCC
T ss_pred hCCCHHHHHHHhhhcCCC
Confidence 999999999999988643
No 177
>2r5t_A Serine/threonine-protein kinase SGK1; AGC protein kinase, apoptosis, ATP-binding, cytoplasm, endoplasmic reticulum, nucleotide-binding, nucleus; HET: ANP; 1.90A {Homo sapiens} PDB: 3hdm_A* 3hdn_A*
Probab=100.00 E-value=9.7e-39 Score=337.79 Aligned_cols=248 Identities=25% Similarity=0.323 Sum_probs=188.5
Q ss_pred ccccccccccccCcccccceEEEEeC-CCchhhhHHhHhhh---hhHHHHHHHHHHH-HhcCCCCceeEEEEeeccccCC
Q 005045 386 KSTDNFSKENLIGTGSFGSVYKGTLG-DGTIVAIKVLKLQQ---QGALKSFIDECNA-LKSTRHRNILRVITACSSVDLE 460 (717)
Q Consensus 386 ~~~~~y~~~~~ig~g~~g~v~~~~~~-~~~~vavK~~~~~~---~~~~~~~~~e~~~-l~~l~h~ni~~~~~~~~~~~~~ 460 (717)
...++|++.+.||+|+||.||+|+.+ +++.||+|++.... ......+..|..+ ++.++||||+++++++ .
T Consensus 35 ~~~~~y~~~~~lG~G~fg~V~~~~~~~~~~~~AiK~~~~~~~~~~~~~~~~~~e~~~ll~~~~hp~Iv~l~~~~-----~ 109 (373)
T 2r5t_A 35 AKPSDFHFLKVIGKGSFGKVLLARHKAEEVFYAVKVLQKKAILKKKEEKHIMSERNVLLKNVKHPFLVGLHFSF-----Q 109 (373)
T ss_dssp CCGGGEEEEEEEECCTTCEEEEEEETTTCCEEEEEEEEGGGBC-------------CCBCCCCCTTBCCEEEEE-----E
T ss_pred CChhheEEEEEEeeCCCeEEEEEEEcCCCCEEEEEEEEHHHhhhhHHHHHHHHHHHHHHHhCCCCCCCCEEEEE-----E
Confidence 45678999999999999999999966 78889999987543 2234556667776 5678999999999985 4
Q ss_pred CCceEEEEEecCCCCChhhhccCCCCCcccccccCHHHHHHHHHHHHHHHHHHHhcCCCCeeecCCCCCCEEeCCCCceE
Q 005045 461 GNDFKALVFEFMSNGNLDQWLHPSPAEHYQFKKLSVIQRLNIAIDVASALDYLHHHCDTPIAHCDLKPSNVLLDKDMTAH 540 (717)
Q Consensus 461 ~~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~dlkp~NIll~~~~~~k 540 (717)
..+..|+||||++|++|.+++... ..+++..++.++.||+.||+|||+. +|+||||||+||+++.+|.+|
T Consensus 110 ~~~~~~lv~E~~~gg~L~~~l~~~-------~~~~~~~~~~~~~qi~~aL~~LH~~---givHrDlkp~NIll~~~g~ik 179 (373)
T 2r5t_A 110 TADKLYFVLDYINGGELFYHLQRE-------RCFLEPRARFYAAEIASALGYLHSL---NIVYRDLKPENILLDSQGHIV 179 (373)
T ss_dssp CSSEEEEEEECCCSCBHHHHHHHH-------SSCCHHHHHHHHHHHHHHHHHHHHT---TCCCCCCCGGGEEECTTSCEE
T ss_pred eCCEEEEEEeCCCCCcHHHHHHhc-------CCCCHHHHHHHHHHHHHHHHHHHHC---CceecCCCHHHEEECCCCCEE
Confidence 456899999999999999998743 5689999999999999999999998 999999999999999999999
Q ss_pred EeeeccchhcccccCCCCCCcceeecccccccccCCCccCC-CCCcccchhhHHHHHHHHHhCCCCCCCCCCCchhhhHH
Q 005045 541 VGDFGLAKFLFEISDNPSKNQTVSIGLKGSIGYIPPEHMNG-QVSILGDIYSYGILLLEMFTGKRPTGDMFKDDFSIHMF 619 (717)
Q Consensus 541 l~Dfg~~~~~~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~-~~~~~sDvwslG~vl~elltg~~p~~~~~~~~~~~~~~ 619 (717)
|+|||+++..... ........||+.|+|||++.+ .++.++|||||||++|||++|..||....... .
T Consensus 180 L~DFG~a~~~~~~-------~~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~ell~G~~Pf~~~~~~~--~--- 247 (373)
T 2r5t_A 180 LTDFGLCKENIEH-------NSTTSTFCGTPEYLAPEVLHKQPYDRTVDWWCLGAVLYEMLYGLPPFYSRNTAE--M--- 247 (373)
T ss_dssp ECCCCBCGGGBCC-------CCCCCSBSCCCCCCCHHHHTTCCCCTHHHHHHHHHHHHHHHHSSCTTCCSBHHH--H---
T ss_pred EeeCccccccccC-------CCccccccCCccccCHHHhCCCCCCchhhhHHHHHHHHHHHcCCCCCCCCCHHH--H---
Confidence 9999999864211 112334679999999999765 48999999999999999999999996532111 1
Q ss_pred HHhcCChhhhhhcCCCCCCCCCCcHHHHHHHHHHHHHHhhhhhhhcchhhhHHHHHHHHHHhhccCCCCcCCCCCHHHHH
Q 005045 620 VSMALPDHVMDILDPSMPLDEENDEEQIEEVIEEKEMMIHIDLEVNTKNKLEECFVSVLRIGLMCSTTSPRERIAMNVVV 699 (717)
Q Consensus 620 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~cl~~~p~~Rps~~eil 699 (717)
...++....... ...+..+.+++.+||+.+|++||++.+.+
T Consensus 248 --------~~~i~~~~~~~~-------------------------------~~~~~~~~~li~~lL~~dp~~R~~~~~~~ 288 (373)
T 2r5t_A 248 --------YDNILNKPLQLK-------------------------------PNITNSARHLLEGLLQKDRTKRLGAKDDF 288 (373)
T ss_dssp --------HHHHHHSCCCCC-------------------------------SSSCHHHHHHHHHHTCSSGGGSTTTTTTH
T ss_pred --------HHHHHhcccCCC-------------------------------CCCCHHHHHHHHHHcccCHHhCCCCCCCH
Confidence 011111111111 11245678899999999999999986433
No 178
>2qr7_A Ribosomal protein S6 kinase alpha-3; kinase domain, RSK2, autoinhibitory, ATP-binding, nucleotide phosphorylation, serine/threonine-protein kinase; 2.00A {Mus musculus} PDB: 2qr8_A 4d9t_A* 4d9u_A* 3rny_A 2wnt_A
Probab=100.00 E-value=6.5e-39 Score=335.89 Aligned_cols=251 Identities=22% Similarity=0.324 Sum_probs=194.7
Q ss_pred cccccccccccCcccccceEEEEeC-CCchhhhHHhHhhhhhHHHHHHHHHHHHhcC-CCCceeEEEEeeccccCCCCce
Q 005045 387 STDNFSKENLIGTGSFGSVYKGTLG-DGTIVAIKVLKLQQQGALKSFIDECNALKST-RHRNILRVITACSSVDLEGNDF 464 (717)
Q Consensus 387 ~~~~y~~~~~ig~g~~g~v~~~~~~-~~~~vavK~~~~~~~~~~~~~~~e~~~l~~l-~h~ni~~~~~~~~~~~~~~~~~ 464 (717)
..++|++.+.||+|+||.||+|.++ +++.||+|++..... ...+|++++.++ .||||+++++++ .+.+.
T Consensus 20 ~~~~y~~~~~lG~G~~g~V~~~~~~~~~~~~avK~~~~~~~----~~~~E~~~l~~~~~hp~iv~~~~~~-----~~~~~ 90 (342)
T 2qr7_A 20 FTDGYEVKEDIGVGSYSVCKRCIHKATNMEFAVKIIDKSKR----DPTEEIEILLRYGQHPNIITLKDVY-----DDGKY 90 (342)
T ss_dssp HHHHEEEEEEEEECSSEEEEEEEETTTTEEEEEEEEETTTC----CCHHHHHHHHHHTTSTTBCCEEEEE-----ECSSE
T ss_pred ccccEEEEEEEeeCCCEEEEEEEECCCCCEEEEEEEEcccC----ChHHHHHHHHHhcCCCCcCeEEEEE-----EcCCE
Confidence 4678999999999999999999965 789999999865432 234688888887 799999999995 44568
Q ss_pred EEEEEecCCCCChhhhccCCCCCcccccccCHHHHHHHHHHHHHHHHHHHhcCCCCeeecCCCCCCEEeCCC----CceE
Q 005045 465 KALVFEFMSNGNLDQWLHPSPAEHYQFKKLSVIQRLNIAIDVASALDYLHHHCDTPIAHCDLKPSNVLLDKD----MTAH 540 (717)
Q Consensus 465 ~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~dlkp~NIll~~~----~~~k 540 (717)
.|+||||++|++|.+++... ..+++..+..++.||+.||+|||+. ||+||||||+||++..+ +.+|
T Consensus 91 ~~lv~E~~~gg~L~~~i~~~-------~~~~~~~~~~~~~qi~~al~~lH~~---givHrDlkp~NIl~~~~~~~~~~~k 160 (342)
T 2qr7_A 91 VYVVTELMKGGELLDKILRQ-------KFFSEREASAVLFTITKTVEYLHAQ---GVVHRDLKPSNILYVDESGNPESIR 160 (342)
T ss_dssp EEEEECCCCSCBHHHHHHTC-------TTCCHHHHHHHHHHHHHHHHHHHHT---TEECSCCCGGGEEESSSSCSGGGEE
T ss_pred EEEEEeCCCCCcHHHHHHHc-------CCCCHHHHHHHHHHHHHHHHHHHHC---CcEeccCCHHHEEEecCCCCcCeEE
Confidence 99999999999999998755 5689999999999999999999998 99999999999998533 3599
Q ss_pred EeeeccchhcccccCCCCCCcceeecccccccccCCCccCCC-CCcccchhhHHHHHHHHHhCCCCCCCCCCCch-hhhH
Q 005045 541 VGDFGLAKFLFEISDNPSKNQTVSIGLKGSIGYIPPEHMNGQ-VSILGDIYSYGILLLEMFTGKRPTGDMFKDDF-SIHM 618 (717)
Q Consensus 541 l~Dfg~~~~~~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~-~~~~sDvwslG~vl~elltg~~p~~~~~~~~~-~~~~ 618 (717)
|+|||.+...... ........||+.|+|||++.+. ++.++|||||||++|+|++|..||........ ....
T Consensus 161 l~Dfg~a~~~~~~-------~~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~ell~g~~Pf~~~~~~~~~~~~~ 233 (342)
T 2qr7_A 161 ICDFGFAKQLRAE-------NGLLMTPCYTANFVAPEVLERQGYDAACDIWSLGVLLYTMLTGYTPFANGPDDTPEEILA 233 (342)
T ss_dssp ECCCTTCEECBCT-------TCCBCCSSCCSSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCSSCSSTTSCHHHHHH
T ss_pred EEECCCcccCcCC-------CCceeccCCCccccCHHHhcCCCCCCccCeeeHhHHHHHHhcCCCCCCCCCcCCHHHHHH
Confidence 9999999865221 1122345689999999997664 88999999999999999999999975432211 1111
Q ss_pred HHHhcCChhhhhhcCCCCCCCCCCcHHHHHHHHHHHHHHhhhhhhhcchhhhHHHHHHHHHHhhccCCCCcCCCCCHHHH
Q 005045 619 FVSMALPDHVMDILDPSMPLDEENDEEQIEEVIEEKEMMIHIDLEVNTKNKLEECFVSVLRIGLMCSTTSPRERIAMNVV 698 (717)
Q Consensus 619 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~cl~~~p~~Rps~~ei 698 (717)
.... ....... .....++..+.+++.+||+.||++|||+.|+
T Consensus 234 ~i~~-----------~~~~~~~---------------------------~~~~~~s~~~~~li~~~L~~dP~~R~t~~~i 275 (342)
T 2qr7_A 234 RIGS-----------GKFSLSG---------------------------GYWNSVSDTAKDLVSKMLHVDPHQRLTAALV 275 (342)
T ss_dssp HHHH-----------CCCCCCS---------------------------TTTTTSCHHHHHHHHHHTCSSTTTSCCHHHH
T ss_pred HHcc-----------CCcccCc---------------------------cccccCCHHHHHHHHHHCCCChhHCcCHHHH
Confidence 1110 0000000 0001125567899999999999999999999
Q ss_pred HHH
Q 005045 699 VNN 701 (717)
Q Consensus 699 l~~ 701 (717)
++.
T Consensus 276 l~h 278 (342)
T 2qr7_A 276 LRH 278 (342)
T ss_dssp TTS
T ss_pred hcC
Confidence 864
No 179
>3hko_A Calcium/calmodulin-dependent protein kinase with domain and 2 calmodulin-like EF...; structural genomics, protist parasite; HET: ANP; 1.80A {Cryptosporidium parvum iowa II}
Probab=100.00 E-value=2.6e-38 Score=333.38 Aligned_cols=270 Identities=21% Similarity=0.276 Sum_probs=201.6
Q ss_pred CcccccccccccccccccCcccccceEEEEeC-CCchhhhHHhHhh-----hhhHHHHHHHHHHHHhcCCCCceeEEEEe
Q 005045 380 SYSDISKSTDNFSKENLIGTGSFGSVYKGTLG-DGTIVAIKVLKLQ-----QQGALKSFIDECNALKSTRHRNILRVITA 453 (717)
Q Consensus 380 s~~~~~~~~~~y~~~~~ig~g~~g~v~~~~~~-~~~~vavK~~~~~-----~~~~~~~~~~e~~~l~~l~h~ni~~~~~~ 453 (717)
-..++....++|++.+.||+|+||.||+|.+. +++.||+|++... .....+.+.+|++++++++||||++++++
T Consensus 17 q~~~~~~~~~~y~~~~~lG~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~~~~E~~~l~~l~hpniv~~~~~ 96 (345)
T 3hko_A 17 QGGSLLELQKKYHLKGAIGQGSYGVVRVAIENQTRAIRAIKIMNKNKIRQINPKDVERIKTEVRLMKKLHHPNIARLYEV 96 (345)
T ss_dssp CCBCHHHHHHHEEEEEEEEECSSCEEEEEEETTTCCEEEEEEEEHHHHHC---CHHHHHHHHHHHHHHCCCTTBCCEEEE
T ss_pred cCchhhhhhhheeecceeeecCCeEEEEEEECCCCceEEEeehhhhhhcccCHHHHHHHHHHHHHHHhCCCCCcceeehh
Confidence 34455667889999999999999999999965 7888999988643 23456788999999999999999999999
Q ss_pred eccccCCCCceEEEEEecCCCCChhhhccCCCCC---------------------------------cccccccCHHHHH
Q 005045 454 CSSVDLEGNDFKALVFEFMSNGNLDQWLHPSPAE---------------------------------HYQFKKLSVIQRL 500 (717)
Q Consensus 454 ~~~~~~~~~~~~~lv~e~~~~~~L~~~l~~~~~~---------------------------------~~~~~~~~~~~~~ 500 (717)
+. +.+..++||||+++++|.+++...... ......+++..+.
T Consensus 97 ~~-----~~~~~~lv~e~~~gg~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 171 (345)
T 3hko_A 97 YE-----DEQYICLVMELCHGGHLLDKLNVFIDDSTGKCAMDVVKTQICPCPECNEEAINGSIHGFRESLDFVQREKLIS 171 (345)
T ss_dssp EE-----CSSEEEEEEECCCSCBHHHHEEEEEETTTTEEEEEEECCCCCCSHHHHHHHHHSCC--CEEECCHHHHHHHHH
T ss_pred hc-----cCCeEEEEEeCCCCCcHHHHHHHhhcccccccccccccccccccccccccccccccccccccccccccHHHHH
Confidence 53 456899999999999999998521000 0001234678889
Q ss_pred HHHHHHHHHHHHHHhcCCCCeeecCCCCCCEEeCCCC--ceEEeeeccchhcccccCCCCCCcceeecccccccccCCCc
Q 005045 501 NIAIDVASALDYLHHHCDTPIAHCDLKPSNVLLDKDM--TAHVGDFGLAKFLFEISDNPSKNQTVSIGLKGSIGYIPPEH 578 (717)
Q Consensus 501 ~i~~~i~~~l~~LH~~~~~~ivH~dlkp~NIll~~~~--~~kl~Dfg~~~~~~~~~~~~~~~~~~~~~~~~~~~y~aPE~ 578 (717)
.++.||+.||+|||+. +|+||||||+||+++.++ .+||+|||.+......... .........||+.|+|||+
T Consensus 172 ~i~~qi~~~l~~LH~~---~ivH~Dlkp~NIll~~~~~~~~kl~Dfg~a~~~~~~~~~---~~~~~~~~~gt~~y~aPE~ 245 (345)
T 3hko_A 172 NIMRQIFSALHYLHNQ---GICHRDIKPENFLFSTNKSFEIKLVDFGLSKEFYKLNNG---EYYGMTTKAGTPYFVAPEV 245 (345)
T ss_dssp HHHHHHHHHHHHHHHT---TEECCCCCGGGEEESCSSSCCEEECCCTTCEEGGGTTCC-----------CCCGGGCCHHH
T ss_pred HHHHHHHHHHHHHHHC---CccccCCChhhEEEecCCCceEEEeeccccccccccCcc---ccccccccCCCccccCchh
Confidence 9999999999999998 999999999999998776 8999999999865332211 1112234568999999999
Q ss_pred cC---CCCCcccchhhHHHHHHHHHhCCCCCCCCCCCchhhhHHHHhcCChhhhhhcCCCCCCCCCCcHHHHHHHHHHHH
Q 005045 579 MN---GQVSILGDIYSYGILLLEMFTGKRPTGDMFKDDFSIHMFVSMALPDHVMDILDPSMPLDEENDEEQIEEVIEEKE 655 (717)
Q Consensus 579 ~~---~~~~~~sDvwslG~vl~elltg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 655 (717)
+. +.++.++|||||||++|+|++|..||......+. . ..+.........
T Consensus 246 ~~~~~~~~~~~~DiwslG~il~el~~g~~pf~~~~~~~~-~------------~~~~~~~~~~~~--------------- 297 (345)
T 3hko_A 246 LNTTNESYGPKCDAWSAGVLLHLLLMGAVPFPGVNDADT-I------------SQVLNKKLCFEN--------------- 297 (345)
T ss_dssp HTCSSSCCCTHHHHHHHHHHHHHHHHSSCSSCCSSHHHH-H------------HHHHHCCCCTTS---------------
T ss_pred hccCCCCCCcHHHHHHHHHHHHHHHHCCCCCCCCChHHH-H------------HHHHhcccccCC---------------
Confidence 75 3578999999999999999999999976432211 1 111111111100
Q ss_pred HHhhhhhhhcchhhhHHHHHHHHHHhhccCCCCcCCCCCHHHHHH
Q 005045 656 MMIHIDLEVNTKNKLEECFVSVLRIGLMCSTTSPRERIAMNVVVN 700 (717)
Q Consensus 656 ~~~~~~~~~~~~~~~~~~~~~l~~li~~cl~~~p~~Rps~~eil~ 700 (717)
+....++..+.+++.+||+.+|++|||+.|+++
T Consensus 298 ------------~~~~~~~~~~~~li~~~l~~~p~~Rps~~~~l~ 330 (345)
T 3hko_A 298 ------------PNYNVLSPLARDLLSNLLNRNVDERFDAMRALQ 330 (345)
T ss_dssp ------------GGGGGSCHHHHHHHHHHSCSCTTTSCCHHHHHH
T ss_pred ------------cccccCCHHHHHHHHHHcCCChhHCCCHHHHhc
Confidence 011122556889999999999999999999986
No 180
>3kn6_A Ribosomal protein S6 kinase alpha-5; AMP-PNP, MSK1, MSK, ATP-binding, metal-binding, NUCL binding, serine/threonine-protein kinase, transferase; 2.00A {Homo sapiens} PDB: 3kn5_A
Probab=100.00 E-value=1.7e-38 Score=330.98 Aligned_cols=252 Identities=21% Similarity=0.280 Sum_probs=177.3
Q ss_pred cccccc---cccCcccccceEEEEeC-CCchhhhHHhHhhhhhHHHHHHHHHHHHhcCC-CCceeEEEEeeccccCCCCc
Q 005045 389 DNFSKE---NLIGTGSFGSVYKGTLG-DGTIVAIKVLKLQQQGALKSFIDECNALKSTR-HRNILRVITACSSVDLEGND 463 (717)
Q Consensus 389 ~~y~~~---~~ig~g~~g~v~~~~~~-~~~~vavK~~~~~~~~~~~~~~~e~~~l~~l~-h~ni~~~~~~~~~~~~~~~~ 463 (717)
++|++. +.||+|+||.||+|.++ +++.||+|++... ....+.+|+.+++.+. ||||+++++++ .+..
T Consensus 8 ~~y~~~~~~~~lG~G~~g~V~~~~~~~~~~~vavK~~~~~---~~~~~~~e~~~l~~l~~h~niv~~~~~~-----~~~~ 79 (325)
T 3kn6_A 8 QHYDLDLKDKPLGEGSFSICRKCVHKKSNQAFAVKIISKR---MEANTQKEITALKLCEGHPNIVKLHEVF-----HDQL 79 (325)
T ss_dssp HHEEECTTSCCSEEETTEEEEEEEETTTCCEEEEEEEEGG---GHHHHHHHHHHHHHTTTCTTBCCEEEEE-----ECSS
T ss_pred hccccccCCCccccCCCeEEEEEEECCCCCEEEEEEEChh---hhhhHHHHHHHHHHhcCCCCeeEEEEEE-----EcCC
Confidence 456654 78999999999999965 7899999998643 3456778999999996 99999999995 4456
Q ss_pred eEEEEEecCCCCChhhhccCCCCCcccccccCHHHHHHHHHHHHHHHHHHHhcCCCCeeecCCCCCCEEeCCCC---ceE
Q 005045 464 FKALVFEFMSNGNLDQWLHPSPAEHYQFKKLSVIQRLNIAIDVASALDYLHHHCDTPIAHCDLKPSNVLLDKDM---TAH 540 (717)
Q Consensus 464 ~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~dlkp~NIll~~~~---~~k 540 (717)
..++||||+++++|.+++... ..+++..+..++.||+.||+|||+. +|+||||||+||+++.++ .+|
T Consensus 80 ~~~lv~e~~~~~~L~~~l~~~-------~~~~~~~~~~i~~qi~~~l~~LH~~---~ivH~Dlkp~NIll~~~~~~~~~k 149 (325)
T 3kn6_A 80 HTFLVMELLNGGELFERIKKK-------KHFSETEASYIMRKLVSAVSHMHDV---GVVHRDLKPENLLFTDENDNLEIK 149 (325)
T ss_dssp EEEEEECCCCSCBHHHHHHHC-------SCCCHHHHHHHHHHHHHHHHHHHHT---TEECCCCCGGGEEEEC----CEEE
T ss_pred EEEEEEEccCCCcHHHHHHhc-------CCCCHHHHHHHHHHHHHHHHHHHHC---CCeecCCCHHHEEEecCCCcccEE
Confidence 899999999999999999754 5689999999999999999999998 999999999999998765 899
Q ss_pred EeeeccchhcccccCCCCCCcceeecccccccccCCCccCC-CCCcccchhhHHHHHHHHHhCCCCCCCCCCCch--hhh
Q 005045 541 VGDFGLAKFLFEISDNPSKNQTVSIGLKGSIGYIPPEHMNG-QVSILGDIYSYGILLLEMFTGKRPTGDMFKDDF--SIH 617 (717)
Q Consensus 541 l~Dfg~~~~~~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~-~~~~~sDvwslG~vl~elltg~~p~~~~~~~~~--~~~ 617 (717)
|+|||.+..... .........||+.|+|||++.+ .++.++|||||||++|+|++|..||........ ...
T Consensus 150 l~Dfg~a~~~~~-------~~~~~~~~~~t~~y~aPE~~~~~~~~~~~DiwslG~il~~ll~g~~pf~~~~~~~~~~~~~ 222 (325)
T 3kn6_A 150 IIDFGFARLKPP-------DNQPLKTPCFTLHYAAPELLNQNGYDESCDLWSLGVILYTMLSGQVPFQSHDRSLTCTSAV 222 (325)
T ss_dssp ECCCTTCEECCC-----------------------------CCCCHHHHHHHHHHHHHHHHHSSCTTC-------CCCHH
T ss_pred EeccccceecCC-------CCCcccccCCCcCccCHHHhcCCCCCCccchHHHHHHHHHHHhCCCCCCCCccccccccHH
Confidence 999999975421 1122234567999999999765 489999999999999999999999976432110 000
Q ss_pred HHHHhcCChhhhhhcCCCCCCCCCCcHHHHHHHHHHHHHHhhhhhhhcchhhhHHHHHHHHHHhhccCCCCcCCCCCHHH
Q 005045 618 MFVSMALPDHVMDILDPSMPLDEENDEEQIEEVIEEKEMMIHIDLEVNTKNKLEECFVSVLRIGLMCSTTSPRERIAMNV 697 (717)
Q Consensus 618 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~cl~~~p~~Rps~~e 697 (717)
. .+..+......... +....++..+.+++.+||+.+|++|||++|
T Consensus 223 ~--------~~~~i~~~~~~~~~---------------------------~~~~~~s~~~~~li~~~L~~dP~~Rpt~~e 267 (325)
T 3kn6_A 223 E--------IMKKIKKGDFSFEG---------------------------EAWKNVSQEAKDLIQGLLTVDPNKRLKMSG 267 (325)
T ss_dssp H--------HHHHHTTTCCCCCS---------------------------HHHHTSCHHHHHHHHHHHCCCTTTCCCTTT
T ss_pred H--------HHHHHHcCCCCCCc---------------------------ccccCCCHHHHHHHHHHCCCChhHCCCHHH
Confidence 0 01111111111110 011223567889999999999999999999
Q ss_pred HHH
Q 005045 698 VVN 700 (717)
Q Consensus 698 il~ 700 (717)
+++
T Consensus 268 ll~ 270 (325)
T 3kn6_A 268 LRY 270 (325)
T ss_dssp STT
T ss_pred Hhc
Confidence 873
No 181
>3kk8_A Calcium/calmodulin dependent protein kinase II; ATP-binding, nucleotide-binding, serine/threonine-protein kinase, transferase; HET: TPO; 1.72A {Caenorhabditis elegans} PDB: 3kk9_A* 3kl8_A 2vn9_A* 3bhh_A*
Probab=100.00 E-value=6.4e-38 Score=320.78 Aligned_cols=252 Identities=22% Similarity=0.357 Sum_probs=198.8
Q ss_pred cccccccccccCcccccceEEEEeC-CCchhhhHHhHhhh--hhHHHHHHHHHHHHhcCCCCceeEEEEeeccccCCCCc
Q 005045 387 STDNFSKENLIGTGSFGSVYKGTLG-DGTIVAIKVLKLQQ--QGALKSFIDECNALKSTRHRNILRVITACSSVDLEGND 463 (717)
Q Consensus 387 ~~~~y~~~~~ig~g~~g~v~~~~~~-~~~~vavK~~~~~~--~~~~~~~~~e~~~l~~l~h~ni~~~~~~~~~~~~~~~~ 463 (717)
..++|++.+.||+|++|.||+|.++ +++.||+|++.... ....+.+.+|++++++++||||+++++++ ...+
T Consensus 4 ~~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~-----~~~~ 78 (284)
T 3kk8_A 4 FSDNYDVKEELGKGAFSVVRRCVHKTTGLEFAAKIINTKKLSARDFQKLEREARICRKLQHPNIVRLHDSI-----QEES 78 (284)
T ss_dssp TTTTEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEEGGGCCHHHHHHHHHHHHHHHHCCCTTBCCEEEEE-----ECSS
T ss_pred hhhhhhhhhhhcCcCCeEEEEEEEcCCCceEEEEEeecccCCHHHHHHHHHHHHHHHHcCCCCcCeEEEEE-----EcCC
Confidence 4679999999999999999999965 78999999986543 33457788999999999999999999995 3455
Q ss_pred eEEEEEecCCCCChhhhccCCCCCcccccccCHHHHHHHHHHHHHHHHHHHhcCCCCeeecCCCCCCEEeCCCCc---eE
Q 005045 464 FKALVFEFMSNGNLDQWLHPSPAEHYQFKKLSVIQRLNIAIDVASALDYLHHHCDTPIAHCDLKPSNVLLDKDMT---AH 540 (717)
Q Consensus 464 ~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~dlkp~NIll~~~~~---~k 540 (717)
..++||||+++++|.+++... ..+++..+..++.|++.|++|||+. +++||||||+||+++.++. +|
T Consensus 79 ~~~~v~e~~~~~~l~~~~~~~-------~~~~~~~~~~~~~~i~~~l~~lH~~---~i~H~dikp~Nil~~~~~~~~~~k 148 (284)
T 3kk8_A 79 FHYLVFDLVTGGELFEDIVAR-------EFYSEADASHCIQQILESIAYCHSN---GIVHRNLKPENLLLASKAKGAAVK 148 (284)
T ss_dssp EEEEEECCCCSCBHHHHHHHH-------SSCCHHHHHHHHHHHHHHHHHHHHT---TEECSCCCGGGEEESSSSTTCCEE
T ss_pred EEEEEEecCCCCCHHHHHHhc-------CCCCHHHHHHHHHHHHHHHHHHHHC---CcCcCCCCHHHEEEecCCCCCcEE
Confidence 889999999999999888644 5689999999999999999999998 9999999999999986654 99
Q ss_pred EeeeccchhcccccCCCCCCcceeecccccccccCCCccCC-CCCcccchhhHHHHHHHHHhCCCCCCCCCCCchhhhHH
Q 005045 541 VGDFGLAKFLFEISDNPSKNQTVSIGLKGSIGYIPPEHMNG-QVSILGDIYSYGILLLEMFTGKRPTGDMFKDDFSIHMF 619 (717)
Q Consensus 541 l~Dfg~~~~~~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~-~~~~~sDvwslG~vl~elltg~~p~~~~~~~~~~~~~~ 619 (717)
|+|||.+..... ........|++.|+|||++.+ .++.++|||||||++|+|++|..||....... ....
T Consensus 149 l~Dfg~~~~~~~--------~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~~l~~l~~g~~pf~~~~~~~--~~~~ 218 (284)
T 3kk8_A 149 LADFGLAIEVND--------SEAWHGFAGTPGYLSPEVLKKDPYSKPVDIWACGVILYILLVGYPPFWDEDQHR--LYAQ 218 (284)
T ss_dssp ECCCTTCEECCS--------SCBCCCSCSCGGGCCHHHHTTCCBCTHHHHHHHHHHHHHHHHSSCSSCCSSHHH--HHHH
T ss_pred EeeceeeEEccc--------CccccCCCCCcCCcCchhhcCCCCCcccchHHHHHHHHHHHHCCCCCCCCchhH--HHHH
Confidence 999999976521 111233568999999999665 48999999999999999999999996542211 1111
Q ss_pred HHhcCChhhhhhcCCCCCCCCCCcHHHHHHHHHHHHHHhhhhhhhcchhhhHHHHHHHHHHhhccCCCCcCCCCCHHHHH
Q 005045 620 VSMALPDHVMDILDPSMPLDEENDEEQIEEVIEEKEMMIHIDLEVNTKNKLEECFVSVLRIGLMCSTTSPRERIAMNVVV 699 (717)
Q Consensus 620 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~cl~~~p~~Rps~~eil 699 (717)
..... .....+ ....++..+.+++.+||+.+|++|||+.|++
T Consensus 219 ~~~~~-------~~~~~~-------------------------------~~~~~~~~~~~li~~~l~~dp~~Rps~~~~l 260 (284)
T 3kk8_A 219 IKAGA-------YDYPSP-------------------------------EWDTVTPEAKSLIDSMLTVNPKKRITADQAL 260 (284)
T ss_dssp HHHTC-------CCCCTT-------------------------------TTTTSCHHHHHHHHHHSCSSTTTSCCHHHHT
T ss_pred HHhcc-------ccCCch-------------------------------hhcccCHHHHHHHHHHcccChhhCCCHHHHh
Confidence 10000 000000 0012245678999999999999999999998
Q ss_pred HH
Q 005045 700 NN 701 (717)
Q Consensus 700 ~~ 701 (717)
+.
T Consensus 261 ~h 262 (284)
T 3kk8_A 261 KV 262 (284)
T ss_dssp TS
T ss_pred cC
Confidence 73
No 182
>3lzb_A Epidermal growth factor receptor; epidermal growth factor kinase domain, multitargeted small M kinase inhibitor; HET: ITI; 2.70A {Homo sapiens}
Probab=100.00 E-value=1.2e-38 Score=332.62 Aligned_cols=259 Identities=24% Similarity=0.400 Sum_probs=196.3
Q ss_pred cccccccccccCcccccceEEEEeC-CCchh----hhHHhHhh-hhhHHHHHHHHHHHHhcCCCCceeEEEEeeccccCC
Q 005045 387 STDNFSKENLIGTGSFGSVYKGTLG-DGTIV----AIKVLKLQ-QQGALKSFIDECNALKSTRHRNILRVITACSSVDLE 460 (717)
Q Consensus 387 ~~~~y~~~~~ig~g~~g~v~~~~~~-~~~~v----avK~~~~~-~~~~~~~~~~e~~~l~~l~h~ni~~~~~~~~~~~~~ 460 (717)
..++|++.+.||+|+||.||+|.+. +++.+ |+|.+... .....+.+.+|+.++++++||||+++++++..
T Consensus 13 ~~~~y~~~~~lG~G~~g~Vy~~~~~~~~~~~~~kv~iK~~~~~~~~~~~~~~~~E~~~l~~l~hp~iv~~~~~~~~---- 88 (327)
T 3lzb_A 13 KETEFKKIKVLGSGAFGTVYKGLWIPEGEKVKIPVAIKELREATSPKANKEILDEAYVMASVDNPHVCRLLGICLT---- 88 (327)
T ss_dssp CTTTEEEEEEEEECSSEEEEEEEECCTTCSCCEEEEEEEECCCSSCCCHHHHHHHHHHHTTCCBTTBCCCCEEEES----
T ss_pred CHhHceEEEEeeeCCCeEEEEEEEcCCCceEEEEEEEEeeccccCHHHHHHHHHHHHHHHhCCCCCeeEEEEEEec----
Confidence 3578999999999999999999954 66666 44544322 23346788999999999999999999998643
Q ss_pred CCceEEEEEecCCCCChhhhccCCCCCcccccccCHHHHHHHHHHHHHHHHHHHhcCCCCeeecCCCCCCEEeCCCCceE
Q 005045 461 GNDFKALVFEFMSNGNLDQWLHPSPAEHYQFKKLSVIQRLNIAIDVASALDYLHHHCDTPIAHCDLKPSNVLLDKDMTAH 540 (717)
Q Consensus 461 ~~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~dlkp~NIll~~~~~~k 540 (717)
...++|++++++++|.+++.... ..+++..++.++.||+.||+|||+. +|+||||||+||+++.++.+|
T Consensus 89 --~~~~~v~~~~~~g~L~~~l~~~~------~~~~~~~~~~i~~qi~~aL~~LH~~---~ivH~Dikp~NIl~~~~~~~k 157 (327)
T 3lzb_A 89 --STVQLITQLMPFGCLLDYVREHK------DNIGSQYLLNWCVQIAKGMNYLEDR---RLVHRDLAARNVLVKTPQHVK 157 (327)
T ss_dssp --SSEEEEECCCSSCBHHHHHHHTT------TCCCHHHHHHHHHHHHHHHHHHHHT---TCCCSCCCGGGEEEEETTEEE
T ss_pred --CCceEEEEecCCCcHHHHHHhcC------CCCCHHHHHHHHHHHHHHHHHHhhC---CCcCCCCCHHHEEEcCCCCEE
Confidence 24789999999999999987543 5689999999999999999999998 999999999999999999999
Q ss_pred EeeeccchhcccccCCCCCCcceeecccccccccCCCccCC-CCCcccchhhHHHHHHHHHh-CCCCCCCCCCCchhhhH
Q 005045 541 VGDFGLAKFLFEISDNPSKNQTVSIGLKGSIGYIPPEHMNG-QVSILGDIYSYGILLLEMFT-GKRPTGDMFKDDFSIHM 618 (717)
Q Consensus 541 l~Dfg~~~~~~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~-~~~~~sDvwslG~vl~ellt-g~~p~~~~~~~~~~~~~ 618 (717)
|+|||.+....... .........++..|+|||++.+ .++.++|||||||++|+|++ |..||........ ..
T Consensus 158 L~DfG~a~~~~~~~-----~~~~~~~~~~t~~y~aPE~~~~~~~~~~~Di~slG~il~ell~~g~~p~~~~~~~~~--~~ 230 (327)
T 3lzb_A 158 ITDFGLAKLLGAEE-----KEYHAEGGKVPIKWMALESILHRIYTHQSDVWSYGVTVWELMTFGSKPYDGIPASEI--SS 230 (327)
T ss_dssp ECCTTC---------------------CCCGGGSCHHHHHHCCCCHHHHHHHHHHHHHHHHTTSCCTTTTCCGGGH--HH
T ss_pred EccCcceeEccCcc-----ccccccCCCccccccCHHHHcCCCCChHHHHHHHHHHHHHHHHCCCCCCCCCCHHHH--HH
Confidence 99999998752211 1112223446788999999654 58999999999999999999 9999976533221 11
Q ss_pred HHHhcCChhhhhhcCCCCCCCCCCcHHHHHHHHHHHHHHhhhhhhhcchhhhHHHHHHHHHHhhccCCCCcCCCCCHHHH
Q 005045 619 FVSMALPDHVMDILDPSMPLDEENDEEQIEEVIEEKEMMIHIDLEVNTKNKLEECFVSVLRIGLMCSTTSPRERIAMNVV 698 (717)
Q Consensus 619 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~cl~~~p~~Rps~~ei 698 (717)
.... ..... .+..++..+.+++.+||+.+|++|||++|+
T Consensus 231 ~~~~------------~~~~~-----------------------------~~~~~~~~l~~li~~~l~~dp~~Rps~~el 269 (327)
T 3lzb_A 231 ILEK------------GERLP-----------------------------QPPICTIDVYMIMRKCWMIDADSRPKFREL 269 (327)
T ss_dssp HHHT------------TCCCC-----------------------------CCTTBCHHHHHHHHHHTCSSGGGSCCHHHH
T ss_pred HHHc------------CCCCC-----------------------------CCccCCHHHHHHHHHHcCCChhHCcCHHHH
Confidence 1110 00000 011125568899999999999999999999
Q ss_pred HHHHHHHHHH
Q 005045 699 VNNLKTIRNC 708 (717)
Q Consensus 699 l~~l~~i~~~ 708 (717)
++.|+++...
T Consensus 270 l~~L~~~~~~ 279 (327)
T 3lzb_A 270 IIEFSKMARD 279 (327)
T ss_dssp HHHHHHHHTS
T ss_pred HHHHHHHHhC
Confidence 9999998743
No 183
>3llt_A Serine/threonine kinase-1, pflammer; lammer kinase, malaria, structural GE structural genomics consortium, SGC, transferase; HET: ANP; 2.50A {Plasmodium falciparum 3D7}
Probab=100.00 E-value=7.6e-38 Score=331.72 Aligned_cols=209 Identities=24% Similarity=0.323 Sum_probs=177.5
Q ss_pred cCCCCcccccccccccccccccCcccccceEEEEeC-CCchhhhHHhHhhhhhHHHHHHHHHHHHhcCC-----CCceeE
Q 005045 376 QSGMSYSDISKSTDNFSKENLIGTGSFGSVYKGTLG-DGTIVAIKVLKLQQQGALKSFIDECNALKSTR-----HRNILR 449 (717)
Q Consensus 376 ~~~~s~~~~~~~~~~y~~~~~ig~g~~g~v~~~~~~-~~~~vavK~~~~~~~~~~~~~~~e~~~l~~l~-----h~ni~~ 449 (717)
...+++.+.....++|++.++||+|+||.||+|++. +++.||+|++.... .....+..|+++++.+. ||||++
T Consensus 22 ~~~~~~~~g~~~~~~y~~~~~lG~G~~g~V~~~~~~~~~~~vavK~~~~~~-~~~~~~~~e~~~l~~l~~~~~~h~~iv~ 100 (360)
T 3llt_A 22 IVHFSWKKGMLLNNAFLVIRKMGDGTFGRVLLCQHIDNKKYYAVKVVRNIK-KYTRSAKIEADILKKIQNDDINNNNIVK 100 (360)
T ss_dssp GGSCCCCTTCEETTTEEEEEEEEECSSEEEEEEEETTTCCEEEEEEECSCH-HHHHHHHHHHHHHHHTCCCSTTGGGBCC
T ss_pred ceeeeeecceEecCEEEEEEEEcccCCeEEEEEEECCCCeEEEEEEeccch-hhhhhhHHHHHHHHHhcccCCCCCCeec
Confidence 345777888888999999999999999999999964 78999999986432 23456778999999986 999999
Q ss_pred EEEeeccccCCCCceEEEEEecCCCCChhhhccCCCCCcccccccCHHHHHHHHHHHHHHHHHHHhcCCCCeeecCCCCC
Q 005045 450 VITACSSVDLEGNDFKALVFEFMSNGNLDQWLHPSPAEHYQFKKLSVIQRLNIAIDVASALDYLHHHCDTPIAHCDLKPS 529 (717)
Q Consensus 450 ~~~~~~~~~~~~~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~dlkp~ 529 (717)
+++++.. .+..++||||+ +++|.+++..... ..+++..+..++.||+.||+|||+. +|+||||||+
T Consensus 101 ~~~~~~~-----~~~~~lv~e~~-~~~L~~~~~~~~~-----~~~~~~~~~~i~~qi~~aL~~LH~~---~ivHrDlkp~ 166 (360)
T 3llt_A 101 YHGKFMY-----YDHMCLIFEPL-GPSLYEIITRNNY-----NGFHIEDIKLYCIEILKALNYLRKM---SLTHTDLKPE 166 (360)
T ss_dssp EEEEEEE-----TTEEEEEECCC-CCBHHHHHHHTTT-----CCCCHHHHHHHHHHHHHHHHHHHHT---TEECSCCSGG
T ss_pred ccceeeE-----CCeeEEEEcCC-CCCHHHHHHhcCC-----CCCCHHHHHHHHHHHHHHHHHHHHC---CeeeCCCCcc
Confidence 9998543 45899999999 8999999975421 4589999999999999999999998 9999999999
Q ss_pred CEEeCC-------------------------CCceEEeeeccchhcccccCCCCCCcceeecccccccccCCCccCC-CC
Q 005045 530 NVLLDK-------------------------DMTAHVGDFGLAKFLFEISDNPSKNQTVSIGLKGSIGYIPPEHMNG-QV 583 (717)
Q Consensus 530 NIll~~-------------------------~~~~kl~Dfg~~~~~~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~-~~ 583 (717)
||+++. ++.+||+|||.+..... ......||+.|+|||++.+ .+
T Consensus 167 NIll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kl~DFG~a~~~~~----------~~~~~~gt~~y~aPE~~~~~~~ 236 (360)
T 3llt_A 167 NILLDDPYFEKSLITVRRVTDGKKIQIYRTKSTGIKLIDFGCATFKSD----------YHGSIINTRQYRAPEVILNLGW 236 (360)
T ss_dssp GEEESCTTCCEEEEEEECTTTCCEEEEEEESCCCEEECCCTTCEETTS----------CCCSCCSCGGGCCHHHHTTCCC
T ss_pred cEEEccccccccccchhcccccccccccccCCCCEEEEeccCceecCC----------CCcCccCcccccCcHHHcCCCC
Confidence 999975 78999999999976411 1123568999999999655 58
Q ss_pred CcccchhhHHHHHHHHHhCCCCCCCC
Q 005045 584 SILGDIYSYGILLLEMFTGKRPTGDM 609 (717)
Q Consensus 584 ~~~sDvwslG~vl~elltg~~p~~~~ 609 (717)
+.++|||||||++|+|++|+.||...
T Consensus 237 ~~~~DiwslG~il~ell~g~~pf~~~ 262 (360)
T 3llt_A 237 DVSSDMWSFGCVLAELYTGSLLFRTH 262 (360)
T ss_dssp CTTHHHHHHHHHHHHHHHSSCSCCCS
T ss_pred CCccchHHHHHHHHHHHHCCCCCCCC
Confidence 99999999999999999999999764
No 184
>3gbz_A Kinase, CMGC CDK; ssgcid, ATP-binding, nucleotide-binding, serine/threonine-protein kinase, transferase; 1.85A {Giardia lamblia} PDB: 3gc0_A*
Probab=100.00 E-value=1.7e-38 Score=331.89 Aligned_cols=273 Identities=24% Similarity=0.327 Sum_probs=193.1
Q ss_pred ccccccccccccccCcccccceEEEEeC-CCchhhhHHhHhhh--hhHHHHHHHHHHHHhcCCCCceeEEEEeeccccCC
Q 005045 384 ISKSTDNFSKENLIGTGSFGSVYKGTLG-DGTIVAIKVLKLQQ--QGALKSFIDECNALKSTRHRNILRVITACSSVDLE 460 (717)
Q Consensus 384 ~~~~~~~y~~~~~ig~g~~g~v~~~~~~-~~~~vavK~~~~~~--~~~~~~~~~e~~~l~~l~h~ni~~~~~~~~~~~~~ 460 (717)
.....++|++.++||+|+||.||+|.+. +++.||+|++.... ......+.+|++++++++||||+++++++.
T Consensus 29 ~~~~~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~----- 103 (329)
T 3gbz_A 29 SATSIDRYRRITKLGEGTYGEVYKAIDTVTNETVAIKRIRLEHEEEGVPGTAIREVSLLKELQHRNIIELKSVIH----- 103 (329)
T ss_dssp ---CGGGEEEEEEEEECSSSEEEEEEETTTTEEEEEEECCCCC--------CHHHHHHGGGCCCTTBCCEEEEEE-----
T ss_pred cccchhhEEEEEEEEecCCeEEEEEEECCCCceEEEEEEcccccccccchhHHHHHHHHHHcCCCCcceEEEEEe-----
Confidence 3456779999999999999999999955 89999999986442 233466789999999999999999999954
Q ss_pred CCceEEEEEecCCCCChhhhccCCCCCcccccccCHHHHHHHHHHHHHHHHHHHhcCCCCeeecCCCCCCEEeC-----C
Q 005045 461 GNDFKALVFEFMSNGNLDQWLHPSPAEHYQFKKLSVIQRLNIAIDVASALDYLHHHCDTPIAHCDLKPSNVLLD-----K 535 (717)
Q Consensus 461 ~~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~dlkp~NIll~-----~ 535 (717)
..+..++||||++ ++|.+++... ..+++..+..++.||+.||+|||+. +|+||||||+||+++ .
T Consensus 104 ~~~~~~lv~e~~~-~~L~~~~~~~-------~~~~~~~~~~i~~ql~~~l~~LH~~---~ivH~Dlkp~NIll~~~~~~~ 172 (329)
T 3gbz_A 104 HNHRLHLIFEYAE-NDLKKYMDKN-------PDVSMRVIKSFLYQLINGVNFCHSR---RCLHRDLKPQNLLLSVSDASE 172 (329)
T ss_dssp ETTEEEEEEECCS-EEHHHHHHHC-------TTCCHHHHHHHHHHHHHHHHHHHHT---TCCCSCCCGGGEEEEC-----
T ss_pred cCCEEEEEEecCC-CCHHHHHhhc-------CCCCHHHHHHHHHHHHHHHHHHHhC---CEECCCCCHHHEEEecCCCCc
Confidence 4558999999997 5999998755 4689999999999999999999998 999999999999994 5
Q ss_pred CCceEEeeeccchhcccccCCCCCCcceeecccccccccCCCccCC--CCCcccchhhHHHHHHHHHhCCCCCCCCCCCc
Q 005045 536 DMTAHVGDFGLAKFLFEISDNPSKNQTVSIGLKGSIGYIPPEHMNG--QVSILGDIYSYGILLLEMFTGKRPTGDMFKDD 613 (717)
Q Consensus 536 ~~~~kl~Dfg~~~~~~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~--~~~~~sDvwslG~vl~elltg~~p~~~~~~~~ 613 (717)
++.+||+|||.+...... ........+|+.|+|||++.+ .++.++|||||||++|+|++|..||......+
T Consensus 173 ~~~~kl~Dfg~a~~~~~~-------~~~~~~~~~t~~y~aPE~~~~~~~~~~~~DiwslG~il~ell~g~~pf~~~~~~~ 245 (329)
T 3gbz_A 173 TPVLKIGDFGLARAFGIP-------IRQFTHEIITLWYRPPEILLGSRHYSTSVDIWSIACIWAEMLMKTPLFPGDSEID 245 (329)
T ss_dssp CCEEEECCTTHHHHHC------------------CCTTCCHHHHTTCCCCCTHHHHHHHHHHHHHHHHSSCSSCCSSHHH
T ss_pred cceEEECcCCCccccCCc-------ccccCCCcCCccccCHHHhcCCCCCCcHHHHHHHHHHHHHHHHCCCCcCCCCHHH
Confidence 556999999999876211 112233567999999999755 37999999999999999999999997653322
Q ss_pred hhhhHHHHhcCChh--hhhh-----cCCCCCCCCCCcHHHHHHHHHHHHHHhhhhhhhcchhhhHHHHHHHHHHhhccCC
Q 005045 614 FSIHMFVSMALPDH--VMDI-----LDPSMPLDEENDEEQIEEVIEEKEMMIHIDLEVNTKNKLEECFVSVLRIGLMCST 686 (717)
Q Consensus 614 ~~~~~~~~~~~~~~--~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~cl~ 686 (717)
...........+.. +... +....+.. ........ ....++..+.+++.+||+
T Consensus 246 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~------------------~~~~~~~~~~~li~~~L~ 304 (329)
T 3gbz_A 246 QLFKIFEVLGLPDDTTWPGVTALPDWKQSFPKF---RGKTLKRV------------------LGALLDDEGLDLLTAMLE 304 (329)
T ss_dssp HHHHHHHHHCCCCTTTSTTGGGSTTCCTTCCCC---CCCCHHHH------------------HGGGSCHHHHHHHHHHTC
T ss_pred HHHHHHHHhCCCchhhhhhhhhhhhhhhhhhhh---ccccHhhh------------------cccccCHHHHHHHHHHcc
Confidence 21111111111111 0000 00011100 00000100 111124567899999999
Q ss_pred CCcCCCCCHHHHHH
Q 005045 687 TSPRERIAMNVVVN 700 (717)
Q Consensus 687 ~~p~~Rps~~eil~ 700 (717)
.||++|||++|+++
T Consensus 305 ~dP~~R~t~~e~l~ 318 (329)
T 3gbz_A 305 MDPVKRISAKNALE 318 (329)
T ss_dssp SSGGGSCCHHHHHT
T ss_pred CChhhCCCHHHHhC
Confidence 99999999999986
No 185
>3mwu_A Calmodulin-domain protein kinase 1; serine/threonine protein kinase, transferase, calcium-bindin binding, bumped kinase inhibitor, BKI; HET: BK3; 1.98A {Cryptosporidium parvum} PDB: 3igo_A* 3ncg_A*
Probab=100.00 E-value=3.3e-38 Score=347.78 Aligned_cols=252 Identities=26% Similarity=0.340 Sum_probs=200.3
Q ss_pred cccccccccccCcccccceEEEEeC-CCchhhhHHhHhhh--hhHHHHHHHHHHHHhcCCCCceeEEEEeeccccCCCCc
Q 005045 387 STDNFSKENLIGTGSFGSVYKGTLG-DGTIVAIKVLKLQQ--QGALKSFIDECNALKSTRHRNILRVITACSSVDLEGND 463 (717)
Q Consensus 387 ~~~~y~~~~~ig~g~~g~v~~~~~~-~~~~vavK~~~~~~--~~~~~~~~~e~~~l~~l~h~ni~~~~~~~~~~~~~~~~ 463 (717)
..++|++.++||+|+||.||+|.++ +++.||+|++.... ......+.+|++++++++||||+++++++ .+..
T Consensus 20 ~~~~y~~~~~lG~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~hpniv~~~~~~-----~~~~ 94 (486)
T 3mwu_A 20 FAERYNIVCMLGKGSFGEVLKCKDRITQQEYAVKVINKASAKNKDTSTILREVELLKKLDHPNIMKLFEIL-----EDSS 94 (486)
T ss_dssp HHHHEEEEEEEECCSSSEEEEEEETTTCCEEEEEEEEHHHHBCSCHHHHHHHHHHHHHCCCTTBCCEEEEE-----ECSS
T ss_pred hhcceEEeEEEeecCCEEEEEEEECCCCCEEEEEEEecccccchHHHHHHHHHHHHHhCCCCCcCeEEEEE-----EcCC
Confidence 4578999999999999999999965 89999999986432 23457788999999999999999999995 4456
Q ss_pred eEEEEEecCCCCChhhhccCCCCCcccccccCHHHHHHHHHHHHHHHHHHHhcCCCCeeecCCCCCCEEeC---CCCceE
Q 005045 464 FKALVFEFMSNGNLDQWLHPSPAEHYQFKKLSVIQRLNIAIDVASALDYLHHHCDTPIAHCDLKPSNVLLD---KDMTAH 540 (717)
Q Consensus 464 ~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~dlkp~NIll~---~~~~~k 540 (717)
..++||||+++++|.+++... ..+++..+..++.||+.||+|||+. +|+||||||+||+++ .++.+|
T Consensus 95 ~~~lv~e~~~~~~L~~~~~~~-------~~~~~~~~~~i~~qi~~al~~lH~~---~ivH~Dlkp~Nil~~~~~~~~~~k 164 (486)
T 3mwu_A 95 SFYIVGELYTGGELFDEIIKR-------KRFSEHDAARIIKQVFSGITYMHKH---NIVHRDLKPENILLESKEKDCDIK 164 (486)
T ss_dssp EEEEEECCCCSCBHHHHHHHH-------SSCCHHHHHHHHHHHHHHHHHHHHT---TCCCSCCSGGGEEESSSSTTCCEE
T ss_pred EEEEEEEcCCCCcHHHHHHhc-------CCCCHHHHHHHHHHHHHHHHHHHHC---CeEeccCchHHEEEecCCCCCCEE
Confidence 899999999999999988644 5689999999999999999999998 999999999999995 456899
Q ss_pred EeeeccchhcccccCCCCCCcceeecccccccccCCCccCCCCCcccchhhHHHHHHHHHhCCCCCCCCCCCchhhhHHH
Q 005045 541 VGDFGLAKFLFEISDNPSKNQTVSIGLKGSIGYIPPEHMNGQVSILGDIYSYGILLLEMFTGKRPTGDMFKDDFSIHMFV 620 (717)
Q Consensus 541 l~Dfg~~~~~~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~sDvwslG~vl~elltg~~p~~~~~~~~~~~~~~~ 620 (717)
|+|||++..... ........||+.|+|||++.+.++.++||||+||++|+|++|..||......+ ....+
T Consensus 165 l~Dfg~a~~~~~--------~~~~~~~~gt~~y~aPE~~~~~~~~~~DiwslG~il~~ll~g~~pf~~~~~~~--~~~~i 234 (486)
T 3mwu_A 165 IIDFGLSTCFQQ--------NTKMKDRIGTAYYIAPEVLRGTYDEKCDVWSAGVILYILLSGTPPFYGKNEYD--ILKRV 234 (486)
T ss_dssp ECSCSCTTTBCC--------C----CCTTGGGGCCGGGGGSCCCHHHHHHHHHHHHHHHHHSSCSSCCSSHHH--HHHHH
T ss_pred EEECCcCeECCC--------CCccCCCcCCCCCCCHHHhCCCCCchhhHHHHHHHHHHHHhCCCCCCCCCHHH--HHHHH
Confidence 999999986521 11223456999999999999999999999999999999999999996542211 11111
Q ss_pred HhcCChhhhhhcCCCCCCCCCCcHHHHHHHHHHHHHHhhhhhhhcchhhhHHHHHHHHHHhhccCCCCcCCCCCHHHHHH
Q 005045 621 SMALPDHVMDILDPSMPLDEENDEEQIEEVIEEKEMMIHIDLEVNTKNKLEECFVSVLRIGLMCSTTSPRERIAMNVVVN 700 (717)
Q Consensus 621 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~cl~~~p~~Rps~~eil~ 700 (717)
. ........ +....++..+.+++.+||+.+|++|||+.|+++
T Consensus 235 ~-----------~~~~~~~~---------------------------~~~~~~s~~~~~li~~~L~~dp~~R~t~~~~l~ 276 (486)
T 3mwu_A 235 E-----------TGKYAFDL---------------------------PQWRTISDDAKDLIRKMLTFHPSLRITATQCLE 276 (486)
T ss_dssp H-----------HTCCCSCS---------------------------GGGGGSCHHHHHHHHHHTCSSTTTSCCHHHHHH
T ss_pred H-----------hCCCCCCC---------------------------cccCCCCHHHHHHHHHHcCCChhhCcCHHHHhc
Confidence 0 00000000 011122556789999999999999999999987
Q ss_pred H
Q 005045 701 N 701 (717)
Q Consensus 701 ~ 701 (717)
.
T Consensus 277 h 277 (486)
T 3mwu_A 277 H 277 (486)
T ss_dssp C
T ss_pred C
Confidence 4
No 186
>1nxk_A MAP kinase-activated protein kinase 2; MK2, phosphorylation, staurosporine, transfe; HET: STU; 2.70A {Homo sapiens} SCOP: d.144.1.7 PDB: 1kwp_A* 1ny3_A* 2onl_C
Probab=100.00 E-value=8.3e-38 Score=334.85 Aligned_cols=255 Identities=20% Similarity=0.274 Sum_probs=189.6
Q ss_pred cccccccc-cccCcccccceEEEEeC-CCchhhhHHhHhhhhhHHHHHHHHHHHHh-cCCCCceeEEEEeeccccCCCCc
Q 005045 387 STDNFSKE-NLIGTGSFGSVYKGTLG-DGTIVAIKVLKLQQQGALKSFIDECNALK-STRHRNILRVITACSSVDLEGND 463 (717)
Q Consensus 387 ~~~~y~~~-~~ig~g~~g~v~~~~~~-~~~~vavK~~~~~~~~~~~~~~~e~~~l~-~l~h~ni~~~~~~~~~~~~~~~~ 463 (717)
..++|.+. +.||+|+||.||+|.++ +++.||+|++... ..+.+|++++. ..+||||+++++++... ..+..
T Consensus 59 ~~~~y~~~~~~LG~G~~g~V~~~~~~~~~~~vAiK~~~~~-----~~~~~E~~~~~~~~~hp~iv~l~~~~~~~-~~~~~ 132 (400)
T 1nxk_A 59 IIDDYKVTSQVLGLGINGKVLQIFNKRTQEKFALKMLQDC-----PKARREVELHWRASQCPHIVRIVDVYENL-YAGRK 132 (400)
T ss_dssp GGGTEEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEECS-----HHHHHHHHHHHHHTTSTTBCCEEEEEEEE-ETTEE
T ss_pred ccccceeccceeeeccCeEEEEEEECCCCCEEEEEEeCcc-----hhHHHHHHHHHHhcCCCCcceEeEEEeec-ccCCc
Confidence 34577776 78999999999999965 7899999998532 34567888874 45899999999986432 23356
Q ss_pred eEEEEEecCCCCChhhhccCCCCCcccccccCHHHHHHHHHHHHHHHHHHHhcCCCCeeecCCCCCCEEeCC---CCceE
Q 005045 464 FKALVFEFMSNGNLDQWLHPSPAEHYQFKKLSVIQRLNIAIDVASALDYLHHHCDTPIAHCDLKPSNVLLDK---DMTAH 540 (717)
Q Consensus 464 ~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~dlkp~NIll~~---~~~~k 540 (717)
..|+||||+++|+|.+++..... ..+++..+..++.||+.||+|||+. +|+||||||+||+++. ++.+|
T Consensus 133 ~~~lv~E~~~gg~L~~~l~~~~~-----~~l~~~~~~~i~~qi~~aL~~LH~~---~ivHrDlkp~Nill~~~~~~~~~k 204 (400)
T 1nxk_A 133 CLLIVMECLDGGELFSRIQDRGD-----QAFTEREASEIMKSIGEAIQYLHSI---NIAHRDVKPENLLYTSKRPNAILK 204 (400)
T ss_dssp EEEEEEECCCSEEHHHHHHCC--------CCBHHHHHHHHHHHHHHHHHHHHT---TEECCCCCGGGEEESSSSTTCCEE
T ss_pred EEEEEEEeCCCCcHHHHHHHhCC-----CCCCHHHHHHHHHHHHHHHHHHHHC---CccccCcCcceEEEecCCCCccEE
Confidence 78999999999999999976521 4689999999999999999999997 9999999999999997 78999
Q ss_pred EeeeccchhcccccCCCCCCcceeecccccccccCCCccCC-CCCcccchhhHHHHHHHHHhCCCCCCCCCCCchh--hh
Q 005045 541 VGDFGLAKFLFEISDNPSKNQTVSIGLKGSIGYIPPEHMNG-QVSILGDIYSYGILLLEMFTGKRPTGDMFKDDFS--IH 617 (717)
Q Consensus 541 l~Dfg~~~~~~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~-~~~~~sDvwslG~vl~elltg~~p~~~~~~~~~~--~~ 617 (717)
|+|||+++.... ........||+.|+|||++.+ .++.++|||||||++|+|++|..||......... ..
T Consensus 205 l~DFG~a~~~~~--------~~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~ell~g~~pf~~~~~~~~~~~~~ 276 (400)
T 1nxk_A 205 LTDFGFAKETTS--------HNSLTTPCYTPYYVAPEVLGPEKYDKSCDMWSLGVIMYILLCGYPPFYSNHGLAISPGMK 276 (400)
T ss_dssp ECCCTTCEECC-------------------CTTCCGGGSCCCCSSSHHHHHHHHHHHHHHHHSSCSCCCCTTCSSCCSHH
T ss_pred EEecccccccCC--------CCccccCCCCCCccCHhhcCCCCCCCcccHHHHHHHHHHHHhCCCCCCCCccccccHHHH
Confidence 999999986421 112234568999999999755 5899999999999999999999999765332210 10
Q ss_pred HHHHhcCChhhhhhcCCCCCCCCCCcHHHHHHHHHHHHHHhhhhhhhcchhhhHHHHHHHHHHhhccCCCCcCCCCCHHH
Q 005045 618 MFVSMALPDHVMDILDPSMPLDEENDEEQIEEVIEEKEMMIHIDLEVNTKNKLEECFVSVLRIGLMCSTTSPRERIAMNV 697 (717)
Q Consensus 618 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~cl~~~p~~Rps~~e 697 (717)
...... ....+.. ....++..+.+++.+||+.+|++|||+.|
T Consensus 277 ~~i~~~---------~~~~~~~-----------------------------~~~~~s~~~~~li~~~L~~dP~~Rpt~~e 318 (400)
T 1nxk_A 277 TRIRMG---------QYEFPNP-----------------------------EWSEVSEEVKMLIRNLLKTEPTQRMTITE 318 (400)
T ss_dssp HHHHHT---------CCCCCTT-----------------------------TTTTSCHHHHHHHHTTSCSSGGGSCCHHH
T ss_pred HHHHcC---------cccCCCc-----------------------------ccccCCHHHHHHHHHHCCCChhHCcCHHH
Confidence 000000 0000000 00122556789999999999999999999
Q ss_pred HHHH
Q 005045 698 VVNN 701 (717)
Q Consensus 698 il~~ 701 (717)
+++.
T Consensus 319 il~h 322 (400)
T 1nxk_A 319 FMNH 322 (400)
T ss_dssp HHHS
T ss_pred HhcC
Confidence 9874
No 187
>3pls_A Macrophage-stimulating protein receptor; protein kinase, CIS autophosphorylation conformation, recept tyrosine kinase, AMP-PNP, unphosphorylated; HET: ANP; 2.24A {Homo sapiens} SCOP: d.144.1.7
Probab=100.00 E-value=1e-37 Score=321.56 Aligned_cols=268 Identities=22% Similarity=0.381 Sum_probs=204.8
Q ss_pred ccccccccccCcccccceEEEEeC-C---CchhhhHHhHhhh-hhHHHHHHHHHHHHhcCCCCceeEEEEeeccccCCCC
Q 005045 388 TDNFSKENLIGTGSFGSVYKGTLG-D---GTIVAIKVLKLQQ-QGALKSFIDECNALKSTRHRNILRVITACSSVDLEGN 462 (717)
Q Consensus 388 ~~~y~~~~~ig~g~~g~v~~~~~~-~---~~~vavK~~~~~~-~~~~~~~~~e~~~l~~l~h~ni~~~~~~~~~~~~~~~ 462 (717)
...|.+.++||+|+||.||+|.+. + +..||+|.+.... ....+.+.+|++++++++||||+++++++.. ..
T Consensus 20 ~~~~~~~~~lg~G~~g~Vy~~~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~----~~ 95 (298)
T 3pls_A 20 RVVTHSDRVIGKGHFGVVYHGEYIDQAQNRIQCAIKSLSRITEMQQVEAFLREGLLMRGLNHPNVLALIGIMLP----PE 95 (298)
T ss_dssp GEEEEEEEEEEEETTEEEEEEEEECSSSCEEEEEEEEETTCCSHHHHHHHHHHHHHHHTCCCTTBCCCCEEECC----SS
T ss_pred ceEEccCceeccCCCceEEEEEEecCCCceeeeeeeeccccccHHHHHHHHHHHHHHHhCCCCCeeeEEEEEec----CC
Confidence 346777899999999999999843 2 3369999887533 3456788999999999999999999999632 33
Q ss_pred ceEEEEEecCCCCChhhhccCCCCCcccccccCHHHHHHHHHHHHHHHHHHHhcCCCCeeecCCCCCCEEeCCCCceEEe
Q 005045 463 DFKALVFEFMSNGNLDQWLHPSPAEHYQFKKLSVIQRLNIAIDVASALDYLHHHCDTPIAHCDLKPSNVLLDKDMTAHVG 542 (717)
Q Consensus 463 ~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~dlkp~NIll~~~~~~kl~ 542 (717)
...++||||+.+++|.+++.... ..+++..+..++.|++.||+|||+. +++||||||+||+++.++.+||+
T Consensus 96 ~~~~~v~e~~~~~~L~~~~~~~~------~~~~~~~~~~i~~qi~~~l~~LH~~---~i~H~dikp~Nili~~~~~~kl~ 166 (298)
T 3pls_A 96 GLPHVLLPYMCHGDLLQFIRSPQ------RNPTVKDLISFGLQVARGMEYLAEQ---KFVHRDLAARNCMLDESFTVKVA 166 (298)
T ss_dssp SCCEEEECCCTTCBHHHHHHCTT------CCCBHHHHHHHHHHHHHHHHHHHHT---TCCCSCCSGGGEEECTTCCEEEC
T ss_pred CCcEEEEecccCCCHHHHHhccc------cCCCHHHHHHHHHHHHHHHHHHHhC---CcccCCCCcceEEEcCCCcEEeC
Confidence 45589999999999999997643 5688999999999999999999998 99999999999999999999999
Q ss_pred eeccchhcccccCCCCCCcceeecccccccccCCCccCC-CCCcccchhhHHHHHHHHHhCCCCCCCCCCCchhhhHHHH
Q 005045 543 DFGLAKFLFEISDNPSKNQTVSIGLKGSIGYIPPEHMNG-QVSILGDIYSYGILLLEMFTGKRPTGDMFKDDFSIHMFVS 621 (717)
Q Consensus 543 Dfg~~~~~~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~-~~~~~sDvwslG~vl~elltg~~p~~~~~~~~~~~~~~~~ 621 (717)
|||.+......... .........+++.|+|||.+.+ .++.++|||||||++|+|++|..|+....... .......
T Consensus 167 Dfg~~~~~~~~~~~---~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~g~~~~~~~~~~~-~~~~~~~ 242 (298)
T 3pls_A 167 DFGLARDILDREYY---SVQQHRHARLPVKWTALESLQTYRFTTKSDVWSFGVLLWELLTRGAPPYRHIDPF-DLTHFLA 242 (298)
T ss_dssp CTTSSCTTTTGGGG---CSCCSSCTTCGGGGSCHHHHTTCCCCHHHHHHHHHHHHHHHHHTSCCTTTTSCGG-GHHHHHH
T ss_pred cCCCcccccCCccc---ccccCcCCCCCccccChhhhccCCCChhhchhhHHHHHHHHhhCCCCCCccCCHH-HHHHHhh
Confidence 99999765222111 1112233567889999999765 58999999999999999999666543322211 1111111
Q ss_pred hcCChhhhhhcCCCCCCCCCCcHHHHHHHHHHHHHHhhhhhhhcchhhhHHHHHHHHHHhhccCCCCcCCCCCHHHHHHH
Q 005045 622 MALPDHVMDILDPSMPLDEENDEEQIEEVIEEKEMMIHIDLEVNTKNKLEECFVSVLRIGLMCSTTSPRERIAMNVVVNN 701 (717)
Q Consensus 622 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~cl~~~p~~Rps~~eil~~ 701 (717)
... ... .+..++..+.+++.+||+.+|++|||++|+++.
T Consensus 243 ~~~--------~~~---------------------------------~~~~~~~~l~~li~~~l~~~p~~Rps~~~ll~~ 281 (298)
T 3pls_A 243 QGR--------RLP---------------------------------QPEYCPDSLYQVMQQCWEADPAVRPTFRVLVGE 281 (298)
T ss_dssp TTC--------CCC---------------------------------CCTTCCHHHHHHHHHHTCSSGGGSCCHHHHHHH
T ss_pred cCC--------CCC---------------------------------CCccchHHHHHHHHHHccCChhhCcCHHHHHHH
Confidence 100 000 011124568899999999999999999999999
Q ss_pred HHHHHHHHHhhh
Q 005045 702 LKTIRNCFLEFK 713 (717)
Q Consensus 702 l~~i~~~~~~~~ 713 (717)
|+++.+++....
T Consensus 282 l~~~~~~l~~~~ 293 (298)
T 3pls_A 282 VEQIVSALLGDH 293 (298)
T ss_dssp HHHHHHHCCSCC
T ss_pred HHHHHHHHhccc
Confidence 999998876544
No 188
>3oz6_A Mitogen-activated protein kinase 1, serine/threon protein kinase; structural genomics consortium, SGC, transferase; 2.37A {Cryptosporidium parvum iowa II}
Probab=100.00 E-value=5.9e-38 Score=335.80 Aligned_cols=209 Identities=23% Similarity=0.385 Sum_probs=162.3
Q ss_pred cccccccccccCcccccceEEEEeC-CCchhhhHHhHhh--hhhHHHHHHHHHHHHhcCC-CCceeEEEEeeccccCCCC
Q 005045 387 STDNFSKENLIGTGSFGSVYKGTLG-DGTIVAIKVLKLQ--QQGALKSFIDECNALKSTR-HRNILRVITACSSVDLEGN 462 (717)
Q Consensus 387 ~~~~y~~~~~ig~g~~g~v~~~~~~-~~~~vavK~~~~~--~~~~~~~~~~e~~~l~~l~-h~ni~~~~~~~~~~~~~~~ 462 (717)
..++|++.+.||+|+||.||+|.+. +|+.||+|++... ......++.+|+.+++++. ||||+++++++.. ++.
T Consensus 7 ~~~~y~~~~~lG~G~~g~V~~~~~~~~~~~vaiK~i~~~~~~~~~~~~~~~E~~~l~~l~~h~niv~l~~~~~~---~~~ 83 (388)
T 3oz6_A 7 VLRKYELVKKLGKGAYGIVWKSIDRRTGEVVAVKKIFDAFQNSTDAQRTFREIMILTELSGHENIVNLLNVLRA---DND 83 (388)
T ss_dssp HHTTEEEEEC-------CEEEEEETTTCCEEEEEEECC--CCHHHHHHHHHHHHHHHHTTTCTTBCCEEEEEEC---TTS
T ss_pred ccCceEEEEEeeeCCCeEEEEEEECCCCCEEEEEEecccccChHHHHHHHHHHHHHHhccCCCCCCeeeeEEec---CCC
Confidence 3578999999999999999999965 8999999987532 3344577889999999997 9999999999643 234
Q ss_pred ceEEEEEecCCCCChhhhccCCCCCcccccccCHHHHHHHHHHHHHHHHHHHhcCCCCeeecCCCCCCEEeCCCCceEEe
Q 005045 463 DFKALVFEFMSNGNLDQWLHPSPAEHYQFKKLSVIQRLNIAIDVASALDYLHHHCDTPIAHCDLKPSNVLLDKDMTAHVG 542 (717)
Q Consensus 463 ~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~dlkp~NIll~~~~~~kl~ 542 (717)
...|+||||++ ++|.+++.. ..+++..+..++.||+.||+|||+. ||+||||||+||+++.++.+||+
T Consensus 84 ~~~~lv~e~~~-~~L~~~~~~--------~~~~~~~~~~i~~qi~~~L~~LH~~---~ivHrDlkp~NIll~~~~~~kl~ 151 (388)
T 3oz6_A 84 RDVYLVFDYME-TDLHAVIRA--------NILEPVHKQYVVYQLIKVIKYLHSG---GLLHRDMKPSNILLNAECHVKVA 151 (388)
T ss_dssp SCEEEEEECCS-EEHHHHHHH--------TCCCHHHHHHHHHHHHHHHHHHHHT---TEECCCCCGGGEEECTTCCEEEC
T ss_pred CEEEEEecccC-cCHHHHHHc--------CCCCHHHHHHHHHHHHHHHHHHHhC---CEEeCCCCHHHeEEcCCCCEEec
Confidence 57899999996 689888863 3588999999999999999999998 99999999999999999999999
Q ss_pred eeccchhcccccCCC--------------CCCcceeecccccccccCCCccCC--CCCcccchhhHHHHHHHHHhCCCCC
Q 005045 543 DFGLAKFLFEISDNP--------------SKNQTVSIGLKGSIGYIPPEHMNG--QVSILGDIYSYGILLLEMFTGKRPT 606 (717)
Q Consensus 543 Dfg~~~~~~~~~~~~--------------~~~~~~~~~~~~~~~y~aPE~~~~--~~~~~sDvwslG~vl~elltg~~p~ 606 (717)
|||+++......... ...........||+.|+|||++.+ .++.++||||+||++|||++|..||
T Consensus 152 DFG~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~DiwSlG~il~ell~g~~pf 231 (388)
T 3oz6_A 152 DFGLSRSFVNIRRVTNNIPLSINENTENFDDDQPILTDYVATRWYRAPEILLGSTKYTKGIDMWSLGCILGEILCGKPIF 231 (388)
T ss_dssp CCTTCEESSSCCCCCCCGGGCCC---------------CCCGGGGCCHHHHTTCCCCCTHHHHHHHHHHHHHHHHSSCSC
T ss_pred CCcccccccccccccccccccccccccccccccccccCCcccCCcCCHHHhcCCCCCCChhhHHHHHHHHHHHHhCCCCC
Confidence 999998653211100 011122344679999999999754 5899999999999999999999999
Q ss_pred CCCC
Q 005045 607 GDMF 610 (717)
Q Consensus 607 ~~~~ 610 (717)
.+..
T Consensus 232 ~~~~ 235 (388)
T 3oz6_A 232 PGSS 235 (388)
T ss_dssp CCSS
T ss_pred CCCC
Confidence 7653
No 189
>2acx_A G protein-coupled receptor kinase 6; GRK, G transferase; HET: ANP; 2.60A {Homo sapiens} PDB: 3nyn_A* 3nyo_A*
Probab=100.00 E-value=5.4e-38 Score=345.81 Aligned_cols=252 Identities=24% Similarity=0.357 Sum_probs=201.4
Q ss_pred ccccccccccccCcccccceEEEEeC-CCchhhhHHhHhhh---hhHHHHHHHHHHHHhcCCCCceeEEEEeeccccCCC
Q 005045 386 KSTDNFSKENLIGTGSFGSVYKGTLG-DGTIVAIKVLKLQQ---QGALKSFIDECNALKSTRHRNILRVITACSSVDLEG 461 (717)
Q Consensus 386 ~~~~~y~~~~~ig~g~~g~v~~~~~~-~~~~vavK~~~~~~---~~~~~~~~~e~~~l~~l~h~ni~~~~~~~~~~~~~~ 461 (717)
...++|++.+.||+|+||.||+|+.+ +|+.||+|++.... ......+.+|++++++++||||+++++++ .+
T Consensus 181 ~~~~~f~~~~~LG~G~fG~Vy~a~~~~tg~~vAvK~l~k~~~~~~~~~~~~~~E~~iL~~l~hp~Iv~l~~~~-----~~ 255 (576)
T 2acx_A 181 VTKNTFRQYRVLGKGGFGEVCACQVRATGKMYACKKLEKKRIKKRKGEAMALNEKQILEKVNSRFVVSLAYAY-----ET 255 (576)
T ss_dssp CCGGGEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEEHHHHHHTTCHHHHHHHHHHHHHCCCTTBCCEEEEE-----EC
T ss_pred ccccceEEEEEEeeCCCEEEEEEEECCCCCEEEEEEEEhHhhhhhHHHHHHHHHHHHHHHcCCCCEeeEEEEE-----ee
Confidence 45678999999999999999999965 89999999986442 23356788999999999999999999985 44
Q ss_pred CceEEEEEecCCCCChhhhccCCCCCcccccccCHHHHHHHHHHHHHHHHHHHhcCCCCeeecCCCCCCEEeCCCCceEE
Q 005045 462 NDFKALVFEFMSNGNLDQWLHPSPAEHYQFKKLSVIQRLNIAIDVASALDYLHHHCDTPIAHCDLKPSNVLLDKDMTAHV 541 (717)
Q Consensus 462 ~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~dlkp~NIll~~~~~~kl 541 (717)
.+..|+||||++||+|.+++..... ..+++..++.++.||+.||+|||+. +|+||||||+||+++.+|.+||
T Consensus 256 ~~~l~lVmEy~~gg~L~~~l~~~~~-----~~l~e~~~~~i~~qIl~aL~yLH~~---gIvHrDLKPeNILld~~g~vKL 327 (576)
T 2acx_A 256 KDALCLVLTLMNGGDLKFHIYHMGQ-----AGFPEARAVFYAAEICCGLEDLHRE---RIVYRDLKPENILLDDHGHIRI 327 (576)
T ss_dssp SSEEEEEECCCCSCBHHHHHHSSSS-----CCCCHHHHHHHHHHHHHHHHHHHHT---TEECCCCCGGGEEECTTSCEEE
T ss_pred CCEEEEEEEcCCCCcHHHHHHhcCC-----CCCCHHHHHHHHHHHHHHHHHHHHC---CEeccCCchheEEEeCCCCeEE
Confidence 5689999999999999999875421 4589999999999999999999998 9999999999999999999999
Q ss_pred eeeccchhcccccCCCCCCcceeecccccccccCCCccCC-CCCcccchhhHHHHHHHHHhCCCCCCCCCCCch--hhhH
Q 005045 542 GDFGLAKFLFEISDNPSKNQTVSIGLKGSIGYIPPEHMNG-QVSILGDIYSYGILLLEMFTGKRPTGDMFKDDF--SIHM 618 (717)
Q Consensus 542 ~Dfg~~~~~~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~-~~~~~sDvwslG~vl~elltg~~p~~~~~~~~~--~~~~ 618 (717)
+|||++..... ........||+.|+|||++.+ .++.++|||||||++|||++|..||........ ....
T Consensus 328 ~DFGla~~~~~--------~~~~~~~~GT~~Y~APEvl~~~~~~~~~DiwSLGvilyeLltG~~PF~~~~~~~~~~~i~~ 399 (576)
T 2acx_A 328 SDLGLAVHVPE--------GQTIKGRVGTVGYMAPEVVKNERYTFSPDWWALGCLLYEMIAGQSPFQQRKKKIKREEVER 399 (576)
T ss_dssp CCCTTCEECCT--------TCCEECCCSCGGGCCHHHHTTCEESSHHHHHHHHHHHHHHHHSSCSSSCSSSCCCHHHHHH
T ss_pred Eecccceeccc--------CccccccCCCccccCHHHHcCCCCCccchHHHHHHHHHHHHhCCCCCcccccchhHHHHHH
Confidence 99999986521 112234579999999999766 489999999999999999999999976432211 0110
Q ss_pred HHHhcCChhhhhhcCCCCCCCCCCcHHHHHHHHHHHHHHhhhhhhhcchhhhHHHHHHHHHHhhccCCCCcCCCC-----
Q 005045 619 FVSMALPDHVMDILDPSMPLDEENDEEQIEEVIEEKEMMIHIDLEVNTKNKLEECFVSVLRIGLMCSTTSPRERI----- 693 (717)
Q Consensus 619 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~cl~~~p~~Rp----- 693 (717)
... .. ....+ ...+..+.+++.+||+.+|++||
T Consensus 400 ~i~-~~--------~~~~p---------------------------------~~~s~~~~dLI~~lL~~dP~~R~g~~~~ 437 (576)
T 2acx_A 400 LVK-EV--------PEEYS---------------------------------ERFSPQARSLCSQLLCKDPAERLGCRGG 437 (576)
T ss_dssp HHH-HC--------CCCCC---------------------------------TTSCHHHHHHHHHHTCSSGGGSTTCSSS
T ss_pred Hhh-cc--------cccCC---------------------------------ccCCHHHHHHHHHhccCCHHHcCCCCCC
Confidence 000 00 00000 11245678999999999999999
Q ss_pred CHHHHHH
Q 005045 694 AMNVVVN 700 (717)
Q Consensus 694 s~~eil~ 700 (717)
+++||++
T Consensus 438 sa~eil~ 444 (576)
T 2acx_A 438 SAREVKE 444 (576)
T ss_dssp HHHHHHT
T ss_pred CHHHHHh
Confidence 7888875
No 190
>3i6u_A CDS1, serine/threonine-protein kinase CHK2; Ser/Thr protein kinase, FHA domain, ATP-binding, cell cycle, mutation, LI-fraumeni syndrome, magnesium; 3.00A {Homo sapiens} PDB: 3i6w_A
Probab=100.00 E-value=6.7e-38 Score=337.97 Aligned_cols=251 Identities=22% Similarity=0.278 Sum_probs=190.5
Q ss_pred cccccccccccCcccccceEEEEeC-CCchhhhHHhHhhh--------hhHHHHHHHHHHHHhcCCCCceeEEEEeeccc
Q 005045 387 STDNFSKENLIGTGSFGSVYKGTLG-DGTIVAIKVLKLQQ--------QGALKSFIDECNALKSTRHRNILRVITACSSV 457 (717)
Q Consensus 387 ~~~~y~~~~~ig~g~~g~v~~~~~~-~~~~vavK~~~~~~--------~~~~~~~~~e~~~l~~l~h~ni~~~~~~~~~~ 457 (717)
..++|.+.+.||+|+||.||+|.++ +++.||+|++.... ......+.+|++++++++||||+++++++.
T Consensus 133 ~~~~y~~~~~LG~G~~g~V~~a~~~~~~~~vavK~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~hpniv~l~~~~~-- 210 (419)
T 3i6u_A 133 LRDEYIMSKTLGSGACGEVKLAFERKTCKKVAIRIISKRKFAIGSAREADPALNVETEIEILKKLNHPCIIKIKNFFD-- 210 (419)
T ss_dssp HHTTEEEEEEEEECSSSEEEEEEETTTCCEEEEEEEEGGGGTTC--------CCHHHHHHHHHHCCCTTBCCCCEEEE--
T ss_pred hhccEEEEeEEeeCCCeEEEEEEECCCCcEEEEEEEEechhcccccccchhHHHHHHHHHHHHhCCCCCEeeEEEEEe--
Confidence 3578999999999999999999965 78999999986432 122345789999999999999999999852
Q ss_pred cCCCCceEEEEEecCCCCChhhhccCCCCCcccccccCHHHHHHHHHHHHHHHHHHHhcCCCCeeecCCCCCCEEeCCCC
Q 005045 458 DLEGNDFKALVFEFMSNGNLDQWLHPSPAEHYQFKKLSVIQRLNIAIDVASALDYLHHHCDTPIAHCDLKPSNVLLDKDM 537 (717)
Q Consensus 458 ~~~~~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~dlkp~NIll~~~~ 537 (717)
.+..++||||+++++|.+++... ..+++..+..++.||+.||+|||+. +|+||||||+||+++.++
T Consensus 211 ----~~~~~lv~e~~~~g~L~~~l~~~-------~~~~~~~~~~i~~qi~~~l~~LH~~---~ivHrDlkp~NIll~~~~ 276 (419)
T 3i6u_A 211 ----AEDYYIVLELMEGGELFDKVVGN-------KRLKEATCKLYFYQMLLAVQYLHEN---GIIHRDLKPENVLLSSQE 276 (419)
T ss_dssp ----SSEEEEEEECCTTCBGGGGTSSS-------CCCCHHHHHHHHHHHHHHHHHHHHT---TCCCSCCCGGGEEESSSS
T ss_pred ----cCceEEEEEcCCCCcHHHHHhcc-------CCCCHHHHHHHHHHHHHHHHHHHHC---CccccCCChHhEEEecCC
Confidence 23579999999999999998755 5689999999999999999999998 999999999999997544
Q ss_pred ---ceEEeeeccchhcccccCCCCCCcceeecccccccccCCCccC----CCCCcccchhhHHHHHHHHHhCCCCCCCCC
Q 005045 538 ---TAHVGDFGLAKFLFEISDNPSKNQTVSIGLKGSIGYIPPEHMN----GQVSILGDIYSYGILLLEMFTGKRPTGDMF 610 (717)
Q Consensus 538 ---~~kl~Dfg~~~~~~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~----~~~~~~sDvwslG~vl~elltg~~p~~~~~ 610 (717)
.+||+|||.+..... ........||+.|+|||++. +.++.++|||||||++|+|++|..||....
T Consensus 277 ~~~~~kl~DFG~a~~~~~--------~~~~~~~~gt~~y~aPE~~~~~~~~~~~~~~DiwslG~il~~lltg~~pf~~~~ 348 (419)
T 3i6u_A 277 EDCLIKITDFGHSKILGE--------TSLMRTLCGTPTYLAPEVLVSVGTAGYNRAVDCWSLGVILFICLSGYPPFSEHR 348 (419)
T ss_dssp SSCCEEECCSSTTTSCC-------------------CTTCCTTTTC----CTTHHHHHHHHHHHHHHHHHHSSCSSCCCS
T ss_pred CcceEEEeecccceecCC--------CccccccCCCCCccCceeeecCCCCCCCchhhhHhHHHHHHHHHHCCCCCCCCc
Confidence 599999999986521 11223456899999999974 347889999999999999999999997643
Q ss_pred CCchhhhHHHHhcCChhhhhhcCCCCCCCCCCcHHHHHHHHHHHHHHhhhhhhhcchhhhHHHHHHHHHHhhccCCCCcC
Q 005045 611 KDDFSIHMFVSMALPDHVMDILDPSMPLDEENDEEQIEEVIEEKEMMIHIDLEVNTKNKLEECFVSVLRIGLMCSTTSPR 690 (717)
Q Consensus 611 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~cl~~~p~ 690 (717)
....... ..... .....+ ....+++..+.+++.+||+.+|+
T Consensus 349 ~~~~~~~-~i~~~-----------~~~~~~---------------------------~~~~~~~~~~~~li~~~L~~dP~ 389 (419)
T 3i6u_A 349 TQVSLKD-QITSG-----------KYNFIP---------------------------EVWAEVSEKALDLVKKLLVVDPK 389 (419)
T ss_dssp SSCCHHH-HHHTT-----------CCCCCH---------------------------HHHTTSCHHHHHHHHHHSCSSTT
T ss_pred chHHHHH-HHhcC-----------CCCCCc---------------------------hhhcccCHHHHHHHHHHccCChh
Confidence 3221111 11110 000000 01112356688999999999999
Q ss_pred CCCCHHHHHH
Q 005045 691 ERIAMNVVVN 700 (717)
Q Consensus 691 ~Rps~~eil~ 700 (717)
+|||++|+++
T Consensus 390 ~Rps~~e~l~ 399 (419)
T 3i6u_A 390 ARFTTEEALR 399 (419)
T ss_dssp TSCCHHHHHH
T ss_pred HCcCHHHHhC
Confidence 9999999986
No 191
>3eqc_A Dual specificity mitogen-activated protein kinase; MEK1 kinase, ATP-binding, disease mutation, nucleoti binding, phosphoprotein; HET: 3BM AGS; 1.80A {Homo sapiens} PDB: 3eqd_A* 3eqf_A* 3eqg_A* 3eqh_A* 3eqi_A* 2y4i_C* 3eqb_A* 2p55_A* 1s9j_A* 3dy7_A* 3e8n_A* 3v01_A* 3v04_A* 3dv3_A* 3mbl_A* 3pp1_A* 3orn_A* 3os3_A* 3sls_A* 1s9i_A* ...
Probab=100.00 E-value=6e-39 Score=340.12 Aligned_cols=201 Identities=28% Similarity=0.448 Sum_probs=172.2
Q ss_pred cccccccccccCcccccceEEEEeC-CCchhhhHHhHhh-hhhHHHHHHHHHHHHhcCCCCceeEEEEeeccccCCCCce
Q 005045 387 STDNFSKENLIGTGSFGSVYKGTLG-DGTIVAIKVLKLQ-QQGALKSFIDECNALKSTRHRNILRVITACSSVDLEGNDF 464 (717)
Q Consensus 387 ~~~~y~~~~~ig~g~~g~v~~~~~~-~~~~vavK~~~~~-~~~~~~~~~~e~~~l~~l~h~ni~~~~~~~~~~~~~~~~~ 464 (717)
..++|++.+.||+|+||.||+|.+. +++.||+|++... .....+.+.+|++++++++||||+++++++. ..+.
T Consensus 31 ~~~~y~~~~~lg~G~~g~V~~~~~~~~~~~va~K~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~-----~~~~ 105 (360)
T 3eqc_A 31 KDDDFEKISELGAGNGGVVFKVSHKPSGLVMARKLIHLEIKPAIRNQIIRELQVLHECNSPYIVGFYGAFY-----SDGE 105 (360)
T ss_dssp CGGGEEEEEEEEECSSCEEEEEEETTTCCEEEEEEEECCCCHHHHHHHHHHHGGGGGCCCTTBCCEEEEEE-----ETTE
T ss_pred ccccceeeeeecCCCCeEEEEEEECCCCcEEEEEEeccccCHHHHHHHHHHHHHHHHCCCCCEEEEeEEEE-----ECCE
Confidence 4678999999999999999999965 7899999998754 3344678899999999999999999999854 3458
Q ss_pred EEEEEecCCCCChhhhccCCCCCcccccccCHHHHHHHHHHHHHHHHHHHhcCCCCeeecCCCCCCEEeCCCCceEEeee
Q 005045 465 KALVFEFMSNGNLDQWLHPSPAEHYQFKKLSVIQRLNIAIDVASALDYLHHHCDTPIAHCDLKPSNVLLDKDMTAHVGDF 544 (717)
Q Consensus 465 ~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~dlkp~NIll~~~~~~kl~Df 544 (717)
.++||||+++++|.+++... ..+++..+..++.|++.|++|||+.+ +|+||||||+||+++.++.+||+||
T Consensus 106 ~~lv~e~~~~~~L~~~l~~~-------~~~~~~~~~~i~~~i~~~l~~lh~~~--~i~H~dlkp~Nil~~~~~~~kl~Df 176 (360)
T 3eqc_A 106 ISICMEHMDGGSLDQVLKKA-------GRIPEQILGKVSIAVIKGLTYLREKH--KIMHRDVKPSNILVNSRGEIKLCDF 176 (360)
T ss_dssp EEEEECCCTTCBHHHHHHHH-------SSCCHHHHHHHHHHHHHHHHHHHHHH--CCCCSCCSGGGEEECTTCCEEECCC
T ss_pred EEEEEECCCCCCHHHHHHHc-------CCCCHHHHHHHHHHHHHHHHHHHHhC--CEEcCCccHHHEEECCCCCEEEEEC
Confidence 99999999999999999744 56899999999999999999999831 8999999999999999999999999
Q ss_pred ccchhcccccCCCCCCcceeecccccccccCCCccCC-CCCcccchhhHHHHHHHHHhCCCCCCCCC
Q 005045 545 GLAKFLFEISDNPSKNQTVSIGLKGSIGYIPPEHMNG-QVSILGDIYSYGILLLEMFTGKRPTGDMF 610 (717)
Q Consensus 545 g~~~~~~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~-~~~~~sDvwslG~vl~elltg~~p~~~~~ 610 (717)
|.+...... ......|++.|+|||++.+ .++.++|||||||++|+|++|..||....
T Consensus 177 g~~~~~~~~---------~~~~~~gt~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~g~~pf~~~~ 234 (360)
T 3eqc_A 177 GVSGQLIDS---------MANSFVGTRSYMSPERLQGTHYSVQSDIWSMGLSLVEMAVGRYPIPPPD 234 (360)
T ss_dssp CCCHHHHHH---------C----CCCCTTCCHHHHTTCCCSHHHHHHHHHHHHHHHHHTSCCSSCCC
T ss_pred CCCcccccc---------cccCCCCCCCeECHHHHcCCCCCchhhHHHHHHHHHHHHhCCCCCCCCC
Confidence 999765221 1223468999999999765 58999999999999999999999997643
No 192
>2yfx_A Tyrosine-protein kinase receptor; nucleotide-binding, transferase; HET: VGH; 1.70A {Homo sapiens} PDB: 2xp2_A* 3aox_A* 2yhv_A 3lcs_A* 3lct_A* 4dce_A* 2xba_A* 2xb7_A*
Probab=100.00 E-value=2.8e-38 Score=330.34 Aligned_cols=273 Identities=25% Similarity=0.395 Sum_probs=205.6
Q ss_pred ccccc-ccccccccccccCcccccceEEEEe------CCCchhhhHHhHhh-hhhHHHHHHHHHHHHhcCCCCceeEEEE
Q 005045 381 YSDIS-KSTDNFSKENLIGTGSFGSVYKGTL------GDGTIVAIKVLKLQ-QQGALKSFIDECNALKSTRHRNILRVIT 452 (717)
Q Consensus 381 ~~~~~-~~~~~y~~~~~ig~g~~g~v~~~~~------~~~~~vavK~~~~~-~~~~~~~~~~e~~~l~~l~h~ni~~~~~ 452 (717)
++++. ...++|++.+.||+|+||.||+|++ .+++.||+|.+... .......+.+|+.++++++||||+++++
T Consensus 21 ~~~~~~~~~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~ 100 (327)
T 2yfx_A 21 ISDLKEVPRKNITLIRGLGHGAFGEVYEGQVSGMPNDPSPLQVAVKTLPEVCSEQDELDFLMEALIISKFNHQNIVRCIG 100 (327)
T ss_dssp GGGSCBCCGGGCEEEEECC--CSSCEEEEEC--------CCEEEEEECCSSCCHHHHHHHHHHHHHHHHCCCTTBCCEEE
T ss_pred hhhcccCChhheEEEEEEcCCCCeeEEEEEEcCCCCCCccceEEEEEeccccchhhHHHHHHHHHHHhhCCCCCCCeEEE
Confidence 34443 3568999999999999999999983 25778999998643 2344567889999999999999999999
Q ss_pred eeccccCCCCceEEEEEecCCCCChhhhccCCCCCcccccccCHHHHHHHHHHHHHHHHHHHhcCCCCeeecCCCCCCEE
Q 005045 453 ACSSVDLEGNDFKALVFEFMSNGNLDQWLHPSPAEHYQFKKLSVIQRLNIAIDVASALDYLHHHCDTPIAHCDLKPSNVL 532 (717)
Q Consensus 453 ~~~~~~~~~~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~dlkp~NIl 532 (717)
++. ..+..++||||+++++|.+++............+++..++.++.||+.||.|||+. +|+||||||+||+
T Consensus 101 ~~~-----~~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~i~~qi~~al~~LH~~---~i~H~dlkp~NIl 172 (327)
T 2yfx_A 101 VSL-----QSLPRFILMELMAGGDLKSFLRETRPRPSQPSSLAMLDLLHVARDIACGCQYLEEN---HFIHRDIAARNCL 172 (327)
T ss_dssp EEC-----SSSSCEEEEECCTTEEHHHHHHHTSCCSSSTTSCCHHHHHHHHHHHHHHHHHHHHT---TCCCSCCCGGGEE
T ss_pred EEc-----CCCCcEEEEecCCCCcHHHHHHhhcccccccccccHHHHHHHHHHHHHHHHHHhhC---CeecCcCCHhHEE
Confidence 953 44578999999999999999976533222335689999999999999999999998 9999999999999
Q ss_pred eCCC---CceEEeeeccchhcccccCCCCCCcceeecccccccccCCCcc-CCCCCcccchhhHHHHHHHHHh-CCCCCC
Q 005045 533 LDKD---MTAHVGDFGLAKFLFEISDNPSKNQTVSIGLKGSIGYIPPEHM-NGQVSILGDIYSYGILLLEMFT-GKRPTG 607 (717)
Q Consensus 533 l~~~---~~~kl~Dfg~~~~~~~~~~~~~~~~~~~~~~~~~~~y~aPE~~-~~~~~~~sDvwslG~vl~ellt-g~~p~~ 607 (717)
++.+ +.+||+|||.+........ ........+++.|+|||++ .+.++.++|||||||++|+|++ |..||.
T Consensus 173 i~~~~~~~~~kl~Dfg~~~~~~~~~~-----~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~ellt~g~~p~~ 247 (327)
T 2yfx_A 173 LTCPGPGRVAKIGDFGMARDIYRASY-----YRKGGCAMLPVKWMPPEAFMEGIFTSKTDTWSFGVLLWEIFSLGYMPYP 247 (327)
T ss_dssp ESCSSTTCCEEECCCHHHHHHHC-----------CCGGGSCGGGCCHHHHHHCCCCHHHHHHHHHHHHHHHHTTSCCSST
T ss_pred EecCCCcceEEECccccccccccccc-----cccCCCcCCCcceeCHhHhcCCCCCchhhHHHHHHHHHHHHcCCCCCCC
Confidence 9844 4699999999986532211 1122334578899999996 4568999999999999999998 999996
Q ss_pred CCCCCchhhhHHHHhcCChhhhhhcCCCCCCCCCCcHHHHHHHHHHHHHHhhhhhhhcchhhhHHHHHHHHHHhhccCCC
Q 005045 608 DMFKDDFSIHMFVSMALPDHVMDILDPSMPLDEENDEEQIEEVIEEKEMMIHIDLEVNTKNKLEECFVSVLRIGLMCSTT 687 (717)
Q Consensus 608 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~cl~~ 687 (717)
..... ......... .... .+..++..+.+++.+||+.
T Consensus 248 ~~~~~--~~~~~~~~~--------~~~~---------------------------------~~~~~~~~l~~li~~~l~~ 284 (327)
T 2yfx_A 248 SKSNQ--EVLEFVTSG--------GRMD---------------------------------PPKNCPGPVYRIMTQCWQH 284 (327)
T ss_dssp TCCHH--HHHHHHHTT--------CCCC---------------------------------CCTTCCHHHHHHHHHHTCS
T ss_pred CcCHH--HHHHHHhcC--------CCCC---------------------------------CCCCCCHHHHHHHHHHhcC
Confidence 54221 111111100 0000 0112255688999999999
Q ss_pred CcCCCCCHHHHHHHHHHHHHHH
Q 005045 688 SPRERIAMNVVVNNLKTIRNCF 709 (717)
Q Consensus 688 ~p~~Rps~~eil~~l~~i~~~~ 709 (717)
+|++|||+.||++.++.+....
T Consensus 285 dp~~Rps~~~ll~~l~~~~~~~ 306 (327)
T 2yfx_A 285 QPEDRPNFAIILERIEYCTQDP 306 (327)
T ss_dssp SGGGSCCHHHHHHHHHHHHHCH
T ss_pred ChhhCcCHHHHHHHHHHHhcCH
Confidence 9999999999999999988654
No 193
>1p4o_A Insulin-like growth factor I receptor protein; IGF-1R, kinase domain, hormone-growth factor complex; 1.50A {Homo sapiens} SCOP: d.144.1.7 PDB: 1m7n_A 3lvp_A* 3lw0_A* 1jqh_A* 2zm3_A* 3f5p_A* 3i81_A* 2oj9_A* 3nw5_A* 3nw6_A* 3nw7_A* 3o23_A* 3qqu_A* 3d94_A* 1k3a_A* 2z8c_A* 1ir3_A* 1gag_A* 1irk_A 3bu3_A* ...
Probab=100.00 E-value=9.2e-39 Score=333.35 Aligned_cols=274 Identities=20% Similarity=0.399 Sum_probs=211.7
Q ss_pred CCCcccccccccccccccccCcccccceEEEEeC------CCchhhhHHhHhhh-hhHHHHHHHHHHHHhcCCCCceeEE
Q 005045 378 GMSYSDISKSTDNFSKENLIGTGSFGSVYKGTLG------DGTIVAIKVLKLQQ-QGALKSFIDECNALKSTRHRNILRV 450 (717)
Q Consensus 378 ~~s~~~~~~~~~~y~~~~~ig~g~~g~v~~~~~~------~~~~vavK~~~~~~-~~~~~~~~~e~~~l~~l~h~ni~~~ 450 (717)
.+..+++....++|++.+.||+|+||.||+|.+. +++.||+|.+.... ......+.+|++++++++||||+++
T Consensus 14 ~~~~~~~~~~~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~E~~~l~~l~h~~i~~~ 93 (322)
T 1p4o_A 14 VYVPDEWEVAREKITMSRELGQGSFGMVYEGVAKGVVKDEPETRVAIKTVNEAASMRERIEFLNEASVMKEFNCHHVVRL 93 (322)
T ss_dssp CCCCCTTBCCGGGEEEEEEEEECSSSEEEEEEEEEEETTEEEEEEEEEECCTTSCHHHHHHHHHHHHHGGGCCCTTBCCE
T ss_pred ccChhhhcchhhheeeeeEeccCCceEEEeeeecCccCCCCceEEEEEecccccCHHHHHHHHHHHHHHHhcCCCCEeee
Confidence 3566778888999999999999999999999853 47789999987442 3345678899999999999999999
Q ss_pred EEeeccccCCCCceEEEEEecCCCCChhhhccCCCCC---cccccccCHHHHHHHHHHHHHHHHHHHhcCCCCeeecCCC
Q 005045 451 ITACSSVDLEGNDFKALVFEFMSNGNLDQWLHPSPAE---HYQFKKLSVIQRLNIAIDVASALDYLHHHCDTPIAHCDLK 527 (717)
Q Consensus 451 ~~~~~~~~~~~~~~~~lv~e~~~~~~L~~~l~~~~~~---~~~~~~~~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~dlk 527 (717)
++++ .+.+..++||||+++++|.+++...... ......+++..+..++.||+.||+|||+. +|+|||||
T Consensus 94 ~~~~-----~~~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~qi~~~l~~lH~~---~i~H~dik 165 (322)
T 1p4o_A 94 LGVV-----SQGQPTLVIMELMTRGDLKSYLRSLRPAMANNPVLAPPSLSKMIQMAGEIADGMAYLNAN---KFVHRDLA 165 (322)
T ss_dssp EEEE-----CSSSSCEEEEECCTTCBHHHHHHHHHHHHHHCTTCCCCCHHHHHHHHHHHHHHHHHHHHT---TCBCSCCS
T ss_pred EEEE-----ccCCccEEEEEeCCCCcHHHHHHHhchhhccCCCCCCcCHHHHHHHHHHHHHHHHHHHHC---CCccCCCc
Confidence 9995 3455789999999999999998642100 00113568999999999999999999998 99999999
Q ss_pred CCCEEeCCCCceEEeeeccchhcccccCCCCCCcceeecccccccccCCCccC-CCCCcccchhhHHHHHHHHHh-CCCC
Q 005045 528 PSNVLLDKDMTAHVGDFGLAKFLFEISDNPSKNQTVSIGLKGSIGYIPPEHMN-GQVSILGDIYSYGILLLEMFT-GKRP 605 (717)
Q Consensus 528 p~NIll~~~~~~kl~Dfg~~~~~~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~-~~~~~~sDvwslG~vl~ellt-g~~p 605 (717)
|+||+++.++.+||+|||.+....... .........+++.|+|||++. +.++.++|||||||++|+|++ |..|
T Consensus 166 p~NIli~~~~~~kl~Dfg~~~~~~~~~-----~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~el~~~g~~p 240 (322)
T 1p4o_A 166 ARNCMVAEDFTVKIGDFGMTRDIYETD-----YYRKGGKGLLPVRWMSPESLKDGVFTTYSDVWSFGVVLWEIATLAEQP 240 (322)
T ss_dssp GGGEEECTTCCEEECCTTCCCGGGGGG-----CEEGGGSSEECGGGCCHHHHHHCCCCHHHHHHHHHHHHHHHHHTSCCT
T ss_pred cceEEEcCCCeEEECcCcccccccccc-----ccccccCCCCCCCccChhhhccCCCCchhhHHHHHHHHHHHHhcCCCc
Confidence 999999999999999999998653221 111122345678899999965 458999999999999999999 8999
Q ss_pred CCCCCCCchhhhHHHHhcCChhhhhhcCCCCCCCCCCcHHHHHHHHHHHHHHhhhhhhhcchhhhHHHHHHHHHHhhccC
Q 005045 606 TGDMFKDDFSIHMFVSMALPDHVMDILDPSMPLDEENDEEQIEEVIEEKEMMIHIDLEVNTKNKLEECFVSVLRIGLMCS 685 (717)
Q Consensus 606 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~cl 685 (717)
|....... .... +....... .+..++..+.+++.+||
T Consensus 241 ~~~~~~~~--~~~~-----------~~~~~~~~------------------------------~~~~~~~~l~~li~~~l 277 (322)
T 1p4o_A 241 YQGLSNEQ--VLRF-----------VMEGGLLD------------------------------KPDNCPDMLFELMRMCW 277 (322)
T ss_dssp TTTSCHHH--HHHH-----------HHTTCCCC------------------------------CCTTCCHHHHHHHHHHT
T ss_pred cccCCHHH--HHHH-----------HHcCCcCC------------------------------CCCCCCHHHHHHHHHHc
Confidence 86542211 1111 01111100 11123566889999999
Q ss_pred CCCcCCCCCHHHHHHHHHHHHH
Q 005045 686 TTSPRERIAMNVVVNNLKTIRN 707 (717)
Q Consensus 686 ~~~p~~Rps~~eil~~l~~i~~ 707 (717)
+.+|++|||+.|+++.|+++..
T Consensus 278 ~~dp~~Rps~~e~l~~L~~~~~ 299 (322)
T 1p4o_A 278 QYNPKMRPSFLEIISSIKEEME 299 (322)
T ss_dssp CSSGGGSCCHHHHHHHHGGGSC
T ss_pred CCCcccCcCHHHHHHHHHHhhc
Confidence 9999999999999999988754
No 194
>1ua2_A CAK, cell division protein kinase 7; cell cycle, phosphorylation, protein-protein interaction, PR kinase, cell cycle, transferase; HET: TPO ATP; 3.02A {Homo sapiens} SCOP: d.144.1.7
Probab=100.00 E-value=3.7e-38 Score=331.87 Aligned_cols=278 Identities=23% Similarity=0.301 Sum_probs=194.6
Q ss_pred ccccccccccccccCcccccceEEEEeC-CCchhhhHHhHhhhh-----hHHHHHHHHHHHHhcCCCCceeEEEEeeccc
Q 005045 384 ISKSTDNFSKENLIGTGSFGSVYKGTLG-DGTIVAIKVLKLQQQ-----GALKSFIDECNALKSTRHRNILRVITACSSV 457 (717)
Q Consensus 384 ~~~~~~~y~~~~~ig~g~~g~v~~~~~~-~~~~vavK~~~~~~~-----~~~~~~~~e~~~l~~l~h~ni~~~~~~~~~~ 457 (717)
+....++|++.+.||+|+||.||.|.+. +|+.||+|++..... .....+.+|++++++++||||+++++++
T Consensus 5 ~~~~~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~--- 81 (346)
T 1ua2_A 5 VKSRAKRYEKLDFLGEGQFATVYKARDKNTNQIVAIKKIKLGHRSEAKDGINRTALREIKLLQELSHPNIIGLLDAF--- 81 (346)
T ss_dssp --------CEEEEEEEETTEEEEEEECSSCCSEEEEEEC------------CTHHHHHHHHHHHCCCTTBCCEEEEE---
T ss_pred hHHHhcccEEEeEEeecCCEEEEEEEECCCCcEEEEEEEecCCcchhhhhhhHHHHHHHHHHhhCCCCCCCeEEEEE---
Confidence 4455789999999999999999999965 789999999875321 1235678999999999999999999995
Q ss_pred cCCCCceEEEEEecCCCCChhhhccCCCCCcccccccCHHHHHHHHHHHHHHHHHHHhcCCCCeeecCCCCCCEEeCCCC
Q 005045 458 DLEGNDFKALVFEFMSNGNLDQWLHPSPAEHYQFKKLSVIQRLNIAIDVASALDYLHHHCDTPIAHCDLKPSNVLLDKDM 537 (717)
Q Consensus 458 ~~~~~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~dlkp~NIll~~~~ 537 (717)
...+..++||||+++ ++.+++.... ..+++..+..++.|++.||+|||+. +|+||||||+||+++.++
T Consensus 82 --~~~~~~~lv~e~~~~-~l~~~~~~~~------~~~~~~~~~~~~~qi~~~l~~lH~~---~ivH~Dlkp~Nil~~~~~ 149 (346)
T 1ua2_A 82 --GHKSNISLVFDFMET-DLEVIIKDNS------LVLTPSHIKAYMLMTLQGLEYLHQH---WILHRDLKPNNLLLDENG 149 (346)
T ss_dssp --CCTTCCEEEEECCSE-EHHHHHTTCC------SSCCSSHHHHHHHHHHHHHHHHHHT---TCCCCCCCGGGEEECTTC
T ss_pred --eeCCceEEEEEcCCC-CHHHHHHhcC------cCCCHHHHHHHHHHHHHHHHHHHHC---CEECCCCCHHHEEEcCCC
Confidence 345588999999975 8988887543 4688889999999999999999998 999999999999999999
Q ss_pred ceEEeeeccchhcccccCCCCCCcceeecccccccccCCCccCC--CCCcccchhhHHHHHHHHHhCCCCCCCCCCCchh
Q 005045 538 TAHVGDFGLAKFLFEISDNPSKNQTVSIGLKGSIGYIPPEHMNG--QVSILGDIYSYGILLLEMFTGKRPTGDMFKDDFS 615 (717)
Q Consensus 538 ~~kl~Dfg~~~~~~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~--~~~~~sDvwslG~vl~elltg~~p~~~~~~~~~~ 615 (717)
.+||+|||.+...... ........+|+.|+|||++.+ .++.++|||||||++|+|++|..||......+..
T Consensus 150 ~~kl~Dfg~a~~~~~~-------~~~~~~~~~t~~y~aPE~~~~~~~~~~~~DiwslG~il~ell~g~~~~~~~~~~~~~ 222 (346)
T 1ua2_A 150 VLKLADFGLAKSFGSP-------NRAYTHQVVTRWYRAPELLFGARMYGVGVDMWAVGCILAELLLRVPFLPGDSDLDQL 222 (346)
T ss_dssp CEEECCCGGGSTTTSC-------CCCCCCSCCCCTTCCHHHHTTCSCCCHHHHHHHHHHHHHHHHHSSCSSCCSSHHHHH
T ss_pred CEEEEecccceeccCC-------cccCCcccccccccCchHhhCCCCCCchhhhHhHHHHHHHHHHCCCCCCCCCHHHHH
Confidence 9999999999865211 112234568999999999754 3789999999999999999999998765322211
Q ss_pred hhHHHHhcCC--hhhhhhcCCCCCCCCCCcHHHHHHHHHHHHHHhhhhhhhcchhhhHHHHHHHHHHhhccCCCCcCCCC
Q 005045 616 IHMFVSMALP--DHVMDILDPSMPLDEENDEEQIEEVIEEKEMMIHIDLEVNTKNKLEECFVSVLRIGLMCSTTSPRERI 693 (717)
Q Consensus 616 ~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~cl~~~p~~Rp 693 (717)
.........+ ..+.+............. ...........++..+.+++.+||+.+|++||
T Consensus 223 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~------------------~~~~~~~~~~~~~~~~~~li~~~L~~dP~~Rp 284 (346)
T 1ua2_A 223 TRIFETLGTPTEEQWPDMCSLPDYVTFKSF------------------PGIPLHHIFSAAGDDLLDLIQGLFLFNPCARI 284 (346)
T ss_dssp HHHHHHHCCCCTTTSSSTTSSTTCCCCCCC------------------CCCCHHHHCTTCCHHHHHHHHHHHCSSTTTSC
T ss_pred HHHHHHcCCCChhhhhhhccCccccccccc------------------CCCChHHhhccCCHHHHHHHHHHhccChhhCC
Confidence 1111111111 111111100000000000 00000001122356789999999999999999
Q ss_pred CHHHHHHH
Q 005045 694 AMNVVVNN 701 (717)
Q Consensus 694 s~~eil~~ 701 (717)
|++|+++.
T Consensus 285 t~~ell~h 292 (346)
T 1ua2_A 285 TATQALKM 292 (346)
T ss_dssp CHHHHHTS
T ss_pred CHHHHhcC
Confidence 99999863
No 195
>1b6c_B TGF-B superfamily receptor type I; complex (isomerase/protein kinase), receptor serine/threonine kinase; 2.60A {Homo sapiens} SCOP: d.144.1.7 PDB: 1ias_A 2x7o_A* 3faa_A* 3kcf_A*
Probab=100.00 E-value=6.1e-38 Score=330.07 Aligned_cols=272 Identities=24% Similarity=0.341 Sum_probs=206.1
Q ss_pred cccccccccccCcccccceEEEEeCCCchhhhHHhHhhhhhHHHHHHHHHHHHhc--CCCCceeEEEEeeccccCCCCce
Q 005045 387 STDNFSKENLIGTGSFGSVYKGTLGDGTIVAIKVLKLQQQGALKSFIDECNALKS--TRHRNILRVITACSSVDLEGNDF 464 (717)
Q Consensus 387 ~~~~y~~~~~ig~g~~g~v~~~~~~~~~~vavK~~~~~~~~~~~~~~~e~~~l~~--l~h~ni~~~~~~~~~~~~~~~~~ 464 (717)
..++|++.+.||+|+||.||+|++ +++.||+|++.... ...+.+|+++++. ++||||+++++++.... .....
T Consensus 40 ~~~~y~~~~~lg~G~~g~Vy~~~~-~~~~vavK~~~~~~---~~~~~~e~~~~~~~~l~h~ni~~~~~~~~~~~-~~~~~ 114 (342)
T 1b6c_B 40 IARTIVLQESIGKGRFGEVWRGKW-RGEEVAVKIFSSRE---ERSWFREAEIYQTVMLRHENILGFIAADNKDN-GTWTQ 114 (342)
T ss_dssp HHHHCEEEEEEEEETTEEEEEEEE-TTEEEEEEEECGGG---HHHHHHHHHHHHHSCCCCTTBCCEEEEEECCC-SSCCC
T ss_pred ccccEEEEeeecCCCCcEEEEEEE-cCccEEEEEeCchh---HHHHHHHHHHHHHhhcCCCcEEEEEeeecccC-Cccce
Confidence 457999999999999999999998 48999999986432 3566778888887 79999999999965432 11237
Q ss_pred EEEEEecCCCCChhhhccCCCCCcccccccCHHHHHHHHHHHHHHHHHHH--------hcCCCCeeecCCCCCCEEeCCC
Q 005045 465 KALVFEFMSNGNLDQWLHPSPAEHYQFKKLSVIQRLNIAIDVASALDYLH--------HHCDTPIAHCDLKPSNVLLDKD 536 (717)
Q Consensus 465 ~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~i~~~i~~~l~~LH--------~~~~~~ivH~dlkp~NIll~~~ 536 (717)
.++||||+++++|.+++.. ..+++..+..++.|++.||+||| +. +|+||||||+||+++.+
T Consensus 115 ~~lv~e~~~~g~L~~~l~~--------~~~~~~~~~~i~~~i~~~l~~lH~~~~~~~~~~---~ivH~Dlkp~NIll~~~ 183 (342)
T 1b6c_B 115 LWLVSDYHEHGSLFDYLNR--------YTVTVEGMIKLALSTASGLAHLHMEIVGTQGKP---AIAHRDLKSKNILVKKN 183 (342)
T ss_dssp EEEEECCCTTCBHHHHHHH--------CCBCHHHHHHHHHHHHHHHHHHHCCBCSTTCBC---EEECSCCSGGGEEECTT
T ss_pred eEEEEeecCCCcHHHHHhc--------cCccHHHHHHHHHHHHHHHHHHHHHHhhhcccC---CeeeCCCCHHHEEECCC
Confidence 8999999999999999964 35899999999999999999999 65 99999999999999999
Q ss_pred CceEEeeeccchhcccccCCCCCCcceeecccccccccCCCccCCC-------CCcccchhhHHHHHHHHHhC-------
Q 005045 537 MTAHVGDFGLAKFLFEISDNPSKNQTVSIGLKGSIGYIPPEHMNGQ-------VSILGDIYSYGILLLEMFTG------- 602 (717)
Q Consensus 537 ~~~kl~Dfg~~~~~~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~-------~~~~sDvwslG~vl~elltg------- 602 (717)
+.+||+|||.+......... .........|++.|+|||++.+. ++.++|||||||++|+|++|
T Consensus 184 ~~~kL~Dfg~~~~~~~~~~~---~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~~~~~~Di~slG~il~el~tg~~~~~~~ 260 (342)
T 1b6c_B 184 GTCCIADLGLAVRHDSATDT---IDIAPNHRVGTKRYMAPEVLDDSINMKHFESFKRADIYAMGLVFWEIARRCSIGGIH 260 (342)
T ss_dssp SCEEECCCTTCEEEETTTTE---EEECCCSCCCCGGGCCHHHHTSCCCTTCHHHHHHHHHHHHHHHHHHHHTTBCBTTBC
T ss_pred CCEEEEECCCceeccccccc---cccccccCCcCcccCCHhhhcccccccccccCCcccHHHHHHHHHHHHhccCcCCcc
Confidence 99999999999765221110 00112345689999999997664 23689999999999999999
Q ss_pred ---CCCCCCCCCCchhhhHHHHhcCChhhhhhcCCCCCCCCCCcHHHHHHHHHHHHHHhhhhhhhcchhhhHHHHHHHHH
Q 005045 603 ---KRPTGDMFKDDFSIHMFVSMALPDHVMDILDPSMPLDEENDEEQIEEVIEEKEMMIHIDLEVNTKNKLEECFVSVLR 679 (717)
Q Consensus 603 ---~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 679 (717)
..||................ +......... .......+++..+.+
T Consensus 261 ~~~~~p~~~~~~~~~~~~~~~~~--------~~~~~~~~~~------------------------~~~~~~~~~~~~l~~ 308 (342)
T 1b6c_B 261 EDYQLPYYDLVPSDPSVEEMRKV--------VCEQKLRPNI------------------------PNRWQSCEALRVMAK 308 (342)
T ss_dssp CCCCCTTTTTSCSSCCHHHHHHH--------HTTSCCCCCC------------------------CGGGGTSHHHHHHHH
T ss_pred cccccCccccCcCcccHHHHHHH--------HHHHHhCCCC------------------------cccccchhHHHHHHH
Confidence 67776543332222111111 1111111110 011123456778999
Q ss_pred HhhccCCCCcCCCCCHHHHHHHHHHHHHHH
Q 005045 680 IGLMCSTTSPRERIAMNVVVNNLKTIRNCF 709 (717)
Q Consensus 680 li~~cl~~~p~~Rps~~eil~~l~~i~~~~ 709 (717)
++.+||+.+|++|||++||++.|+.+.++.
T Consensus 309 li~~cl~~dp~~Rps~~~i~~~L~~i~~~~ 338 (342)
T 1b6c_B 309 IMRECWYANGAARLTALRIKKTLSQLSQQE 338 (342)
T ss_dssp HHHHHCCSSGGGSCCHHHHHHHHHHHHHTT
T ss_pred HHHHHhccChhhCCCHHHHHHHHHHHHHHh
Confidence 999999999999999999999999998753
No 196
>2a19_B Interferon-induced, double-stranded RNA-activated kinase; transferase, protein biosynthesis, protein synthesis transferase complex; HET: TPO ANP; 2.50A {Homo sapiens} PDB: 2a1a_B*
Probab=100.00 E-value=1.1e-38 Score=326.54 Aligned_cols=260 Identities=23% Similarity=0.369 Sum_probs=201.6
Q ss_pred cccccccccccCcccccceEEEEeC-CCchhhhHHhHhhhhhHHHHHHHHHHHHhcCCCCceeEEEEeeccccC------
Q 005045 387 STDNFSKENLIGTGSFGSVYKGTLG-DGTIVAIKVLKLQQQGALKSFIDECNALKSTRHRNILRVITACSSVDL------ 459 (717)
Q Consensus 387 ~~~~y~~~~~ig~g~~g~v~~~~~~-~~~~vavK~~~~~~~~~~~~~~~e~~~l~~l~h~ni~~~~~~~~~~~~------ 459 (717)
..++|++.+.||+|+||.||+|.+. +++.||+|.+.... ..+.+|++++++++||||+++++++.....
T Consensus 9 ~~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~----~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~~~~~ 84 (284)
T 2a19_B 9 FGMDFKEIELIGSGGFGQVFKAKHRIDGKTYVIKRVKYNN----EKAEREVKALAKLDHVNIVHYNGCWDGFDYDPETSS 84 (284)
T ss_dssp HHHHEEEEEEEECSSSCCEEEEEETTTCCEEEEEEEECCS----GGGHHHHHHHHHCCCTTBCCEEEEEEEEEEC-----
T ss_pred hccccceeeeeccCCceEEEEEEEcCCCeEEEEEEecccc----HHHHHHHHHHHhCCCCCEEEEeeeEeccccCccccc
Confidence 3578999999999999999999976 89999999987543 346689999999999999999998643211
Q ss_pred -----CCCceEEEEEecCCCCChhhhccCCCCCcccccccCHHHHHHHHHHHHHHHHHHHhcCCCCeeecCCCCCCEEeC
Q 005045 460 -----EGNDFKALVFEFMSNGNLDQWLHPSPAEHYQFKKLSVIQRLNIAIDVASALDYLHHHCDTPIAHCDLKPSNVLLD 534 (717)
Q Consensus 460 -----~~~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~dlkp~NIll~ 534 (717)
......++||||+++++|.+++.... ...+++..+..++.||+.||.|||+. +|+||||||+||+++
T Consensus 85 ~~~~~~~~~~~~lv~e~~~~~~L~~~l~~~~-----~~~~~~~~~~~i~~qi~~~l~~lH~~---~i~H~dlkp~Nil~~ 156 (284)
T 2a19_B 85 KNSSRSKTKCLFIQMEFCDKGTLEQWIEKRR-----GEKLDKVLALELFEQITKGVDYIHSK---KLINRDLKPSNIFLV 156 (284)
T ss_dssp ----CCEEEEEEEEECCCCSCBHHHHHHHGG-----GSCCCHHHHHHHHHHHHHHHHHHHHT---TEECSCCSGGGEEEE
T ss_pred ccccccCcceEEEEEeccCCCCHHHHHhhcc-----CCCCCHHHHHHHHHHHHHHHHHHHhC---CeeeccCCHHHEEEc
Confidence 22456899999999999999996432 15689999999999999999999998 999999999999999
Q ss_pred CCCceEEeeeccchhcccccCCCCCCcceeecccccccccCCCccCC-CCCcccchhhHHHHHHHHHhCCCCCCCCCCCc
Q 005045 535 KDMTAHVGDFGLAKFLFEISDNPSKNQTVSIGLKGSIGYIPPEHMNG-QVSILGDIYSYGILLLEMFTGKRPTGDMFKDD 613 (717)
Q Consensus 535 ~~~~~kl~Dfg~~~~~~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~-~~~~~sDvwslG~vl~elltg~~p~~~~~~~~ 613 (717)
.++.+||+|||.+...... .......+++.|+|||++.+ .++.++|||||||++|+|++|..|+...
T Consensus 157 ~~~~~kl~Dfg~~~~~~~~--------~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~~~~~~~~~---- 224 (284)
T 2a19_B 157 DTKQVKIGDFGLVTSLKND--------GKRTRSKGTLRYMSPEQISSQDYGKEVDLYALGLILAELLHVCDTAFET---- 224 (284)
T ss_dssp ETTEEEECCCTTCEESSCC--------SCCCCCCSCCTTSCHHHHHCSCCCTHHHHHHHHHHHHHHHSCCSSHHHH----
T ss_pred CCCCEEECcchhheecccc--------ccccccCCcccccChhhhccCCCcchhhhHHHHHHHHHHHhcCCcchhH----
Confidence 9999999999998765221 11223458999999999655 4899999999999999999999886321
Q ss_pred hhhhHHHHhcCChhhhhhcCCCCCCCCCCcHHHHHHHHHHHHHHhhhhhhhcchhhhHHHHHHHHHHhhccCCCCcCCCC
Q 005045 614 FSIHMFVSMALPDHVMDILDPSMPLDEENDEEQIEEVIEEKEMMIHIDLEVNTKNKLEECFVSVLRIGLMCSTTSPRERI 693 (717)
Q Consensus 614 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~cl~~~p~~Rp 693 (717)
... .......... ..++..+.+++.+||+.+|++||
T Consensus 225 ~~~-----------~~~~~~~~~~---------------------------------~~~~~~~~~li~~~l~~dp~~Rp 260 (284)
T 2a19_B 225 SKF-----------FTDLRDGIIS---------------------------------DIFDKKEKTLLQKLLSKKPEDRP 260 (284)
T ss_dssp HHH-----------HHHHHTTCCC---------------------------------TTSCHHHHHHHHHHTCSSGGGSC
T ss_pred HHH-----------HHHhhccccc---------------------------------ccCCHHHHHHHHHHccCChhhCc
Confidence 000 0001111111 11144578899999999999999
Q ss_pred CHHHHHHHHHHHHHHHHhhhh
Q 005045 694 AMNVVVNNLKTIRNCFLEFKK 714 (717)
Q Consensus 694 s~~eil~~l~~i~~~~~~~~~ 714 (717)
|+.|+++.++.++....+.++
T Consensus 261 s~~e~l~~l~~~~~~~~~~~~ 281 (284)
T 2a19_B 261 NTSEILRTLTVWKKSPEKNER 281 (284)
T ss_dssp CHHHHHHHHHHHTC-------
T ss_pred CHHHHHHHHHHHhhCCCcccc
Confidence 999999999998866555443
No 197
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=100.00 E-value=1.8e-36 Score=329.73 Aligned_cols=328 Identities=16% Similarity=0.163 Sum_probs=267.5
Q ss_pred cceecEEEcCCCcCcCCCCcCCcCCCCCCEEECCCCcccccCCcCCCCCCCCCEEEccCccccccCCccccCCCCCCEEe
Q 005045 9 HLMTQDLNLTYNYLSGKIPTNLSHCTELRSFEASVNDFVGQIPNQLSSLTKLEIIGLGGSNLTGNVPAWIGNFSSLKALS 88 (717)
Q Consensus 9 ~~~~~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~ 88 (717)
...+++|+|++|.+++. | .|+.+++|++|+|++|.+++ +| ++.+++|++|+|++|.+++ ++ ++.+++|++|+
T Consensus 41 l~~L~~L~Ls~n~l~~~-~-~l~~l~~L~~L~Ls~n~l~~-~~--~~~l~~L~~L~Ls~N~l~~-~~--~~~l~~L~~L~ 112 (457)
T 3bz5_A 41 LATLTSLDCHNSSITDM-T-GIEKLTGLTKLICTSNNITT-LD--LSQNTNLTYLACDSNKLTN-LD--VTPLTKLTYLN 112 (457)
T ss_dssp HTTCCEEECCSSCCCCC-T-TGGGCTTCSEEECCSSCCSC-CC--CTTCTTCSEEECCSSCCSC-CC--CTTCTTCCEEE
T ss_pred cCCCCEEEccCCCcccC-h-hhcccCCCCEEEccCCcCCe-Ec--cccCCCCCEEECcCCCCce-ee--cCCCCcCCEEE
Confidence 34789999999999964 5 69999999999999999996 45 8999999999999999995 44 88999999999
Q ss_pred ccCCcCcccCChhhhccCCCCeEeccCCCCCCCCCccccCCCCccEEEcccCcccccCCcccccCCCCcceeeccccccc
Q 005045 89 LAWNNLRGSIPNELGQLSGLGFFTLYGNFISGIIPSSIYNISSIYYFSVTQNQLHGQLPTDVGLTLPNLKIFAGAVNYFT 168 (717)
Q Consensus 89 L~~n~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~~l~~~~~~~l~~L~~L~l~~n~l~ 168 (717)
|++|++++ ++ +..+++|++|+|++|+++++ .++++++|++|++++|...+.++ +..+++|+.|++++|.++
T Consensus 113 L~~N~l~~-l~--~~~l~~L~~L~l~~N~l~~l---~l~~l~~L~~L~l~~n~~~~~~~---~~~l~~L~~L~ls~n~l~ 183 (457)
T 3bz5_A 113 CDTNKLTK-LD--VSQNPLLTYLNCARNTLTEI---DVSHNTQLTELDCHLNKKITKLD---VTPQTQLTTLDCSFNKIT 183 (457)
T ss_dssp CCSSCCSC-CC--CTTCTTCCEEECTTSCCSCC---CCTTCTTCCEEECTTCSCCCCCC---CTTCTTCCEEECCSSCCC
T ss_pred CCCCcCCe-ec--CCCCCcCCEEECCCCcccee---ccccCCcCCEEECCCCCcccccc---cccCCcCCEEECCCCccc
Confidence 99999995 44 89999999999999999975 38899999999999996554663 457899999999999999
Q ss_pred ccCCccCCCCCCCCEEeccCccccccCCCCccCCCCCCeeeccccccCCcccCchhhhhhhccCCCCCEEEeecCcccCc
Q 005045 169 GSIPVSLSNASNLQVLDFAENGLTGTIPGNFGSLKDLVRLNFDQNELGSREIGDLNFLKFLANCTSLEVLGLARNSFGGE 248 (717)
Q Consensus 169 ~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~~ 248 (717)
+. | +..+++|+.|++++|++++. .+..+++|+.|++++|+++.++ +..+++|+.|++++|.+++.
T Consensus 184 ~l-~--l~~l~~L~~L~l~~N~l~~~---~l~~l~~L~~L~Ls~N~l~~ip---------~~~l~~L~~L~l~~N~l~~~ 248 (457)
T 3bz5_A 184 EL-D--VSQNKLLNRLNCDTNNITKL---DLNQNIQLTFLDCSSNKLTEID---------VTPLTQLTYFDCSVNPLTEL 248 (457)
T ss_dssp CC-C--CTTCTTCCEEECCSSCCSCC---CCTTCTTCSEEECCSSCCSCCC---------CTTCTTCSEEECCSSCCSCC
T ss_pred ee-c--cccCCCCCEEECcCCcCCee---ccccCCCCCEEECcCCcccccC---------ccccCCCCEEEeeCCcCCCc
Confidence 74 4 88999999999999999964 3889999999999999999864 67789999999999999965
Q ss_pred Cchhhhhcc------ccccEEecCCCccCCCCCccccCCCCCCEEEccCCcCccccch--------hhhcCCCCCeEEcc
Q 005045 249 MPISIANLS------THLRRLTMGENLMHGNIPVGIGNLVNLNLLGLEGNNLSGSVPE--------VIGRLNKLEGLGLN 314 (717)
Q Consensus 249 ~p~~~~~~~------~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~--------~~~~l~~L~~L~Ls 314 (717)
.+..+..+. .+|+.|++++|.+.+.+| +..+++|+.|+|++|+..+.+|. .++++++|++|+|+
T Consensus 249 ~~~~l~~L~~L~l~~n~L~~L~l~~n~~~~~~~--~~~l~~L~~L~Ls~n~~l~~l~~~~~~L~~L~l~~~~~L~~L~L~ 326 (457)
T 3bz5_A 249 DVSTLSKLTTLHCIQTDLLEIDLTHNTQLIYFQ--AEGCRKIKELDVTHNTQLYLLDCQAAGITELDLSQNPKLVYLYLN 326 (457)
T ss_dssp CCTTCTTCCEEECTTCCCSCCCCTTCTTCCEEE--CTTCTTCCCCCCTTCTTCCEEECTTCCCSCCCCTTCTTCCEEECT
T ss_pred CHHHCCCCCEEeccCCCCCEEECCCCccCCccc--ccccccCCEEECCCCcccceeccCCCcceEechhhcccCCEEECC
Confidence 443333221 134455555555444443 56789999999999987666654 25667899999999
Q ss_pred cCcCCCCCCcccccccccceeecccccccccCCcCcc-------------CcCCCceEEeecccCCCCCCcccc
Q 005045 315 VNKFSGLIPSSLGNLTILTRLWMEENRLEGSIPPSLG-------------NCQKLLVLNLSSNDLNGTIPKEVR 375 (717)
Q Consensus 315 ~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~-------------~l~~L~~L~l~~N~l~~~~p~~~~ 375 (717)
+|+++++ + ++.+++|+.|++++|++++ ++. +. .+..|..+++++|.++|.+|+.+.
T Consensus 327 ~N~l~~l-~--l~~l~~L~~L~l~~N~l~~-l~~-L~~L~l~~n~l~g~~~~~~l~~l~l~~N~l~g~ip~~~~ 395 (457)
T 3bz5_A 327 NTELTEL-D--VSHNTKLKSLSCVNAHIQD-FSS-VGKIPALNNNFEAEGQTITMPKETLTNNSLTIAVSPDLL 395 (457)
T ss_dssp TCCCSCC-C--CTTCTTCSEEECCSSCCCB-CTT-GGGSSGGGTSEEEEEEEEECCCBCCBTTBEEEECCTTCB
T ss_pred CCccccc-c--cccCCcCcEEECCCCCCCC-ccc-cccccccCCcEEecceeeecCccccccCcEEEEcChhHh
Confidence 9999985 2 8899999999999999985 221 11 235578889999999999998764
No 198
>4ejn_A RAC-alpha serine/threonine-protein kinase; AKT1, autoinhibition, allosteric inhibitor, kinase inhibitor hydrophobic collapase, ATPase; HET: 0R4; 2.19A {Homo sapiens} PDB: 3o96_A*
Probab=100.00 E-value=1.5e-38 Score=346.44 Aligned_cols=249 Identities=22% Similarity=0.335 Sum_probs=190.1
Q ss_pred ccccccccccccCcccccceEEEEeC-CCchhhhHHhHhh---hhhHHHHHHHHHHHHhcCCCCceeEEEEeeccccCCC
Q 005045 386 KSTDNFSKENLIGTGSFGSVYKGTLG-DGTIVAIKVLKLQ---QQGALKSFIDECNALKSTRHRNILRVITACSSVDLEG 461 (717)
Q Consensus 386 ~~~~~y~~~~~ig~g~~g~v~~~~~~-~~~~vavK~~~~~---~~~~~~~~~~e~~~l~~l~h~ni~~~~~~~~~~~~~~ 461 (717)
...++|++.++||+|+||.||+|++. +|+.||+|++... .......+.+|+++++.++||||+++++++. .
T Consensus 145 ~~~~~y~~~~~lG~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~l~~~~~-----~ 219 (446)
T 4ejn_A 145 VTMNEFEYLKLLGKGTFGKVILVKEKATGRYYAMKILKKEVIVAKDEVAHTLTENRVLQNSRHPFLTALKYSFQ-----T 219 (446)
T ss_dssp CCGGGEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEEHHHHC-------------CCCCCSCTTSCCEEEEEE-----E
T ss_pred CChHHcEEeEEEeeCcCEEEEEEEEcCCCCEEEEEEEEhhhhhhhHHHHHHHHHHHHHHhCCCCeEeeEEEEEe-----e
Confidence 34678999999999999999999965 7999999998754 2334566788999999999999999999954 4
Q ss_pred CceEEEEEecCCCCChhhhccCCCCCcccccccCHHHHHHHHHHHHHHHHHHHh-cCCCCeeecCCCCCCEEeCCCCceE
Q 005045 462 NDFKALVFEFMSNGNLDQWLHPSPAEHYQFKKLSVIQRLNIAIDVASALDYLHH-HCDTPIAHCDLKPSNVLLDKDMTAH 540 (717)
Q Consensus 462 ~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~i~~~i~~~l~~LH~-~~~~~ivH~dlkp~NIll~~~~~~k 540 (717)
.+..++||||+++++|.+++... ..+++..+..++.||+.||+|||+ . ||+||||||+||+++.++.+|
T Consensus 220 ~~~~~lv~e~~~~~~L~~~l~~~-------~~~~~~~~~~~~~qi~~aL~~LH~~~---giiHrDlkp~NIll~~~~~~k 289 (446)
T 4ejn_A 220 HDRLCFVMEYANGGELFFHLSRE-------RVFSEDRARFYGAEIVSALDYLHSEK---NVVYRDLKLENLMLDKDGHIK 289 (446)
T ss_dssp TTEEEEEECCCSSCBHHHHHHHH-------SCCCHHHHHHHHHHHHHHHHHHHHHT---CCCCCCCCGGGEEECSSSCEE
T ss_pred CCEEEEEEeeCCCCcHHHHHHhc-------CCCCHHHHHHHHHHHHHHHHHHhhcC---CEEECCCCHHHEEECCCCCEE
Confidence 45899999999999999998744 568999999999999999999998 6 999999999999999999999
Q ss_pred EeeeccchhcccccCCCCCCcceeecccccccccCCCccCC-CCCcccchhhHHHHHHHHHhCCCCCCCCCCCchhhhHH
Q 005045 541 VGDFGLAKFLFEISDNPSKNQTVSIGLKGSIGYIPPEHMNG-QVSILGDIYSYGILLLEMFTGKRPTGDMFKDDFSIHMF 619 (717)
Q Consensus 541 l~Dfg~~~~~~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~-~~~~~sDvwslG~vl~elltg~~p~~~~~~~~~~~~~~ 619 (717)
|+|||++..... .........||+.|+|||++.+ .++.++|||||||++|||++|..||....... ....
T Consensus 290 l~DFG~a~~~~~-------~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~ell~g~~Pf~~~~~~~--~~~~ 360 (446)
T 4ejn_A 290 ITDFGLCKEGIK-------DGATMKTFCGTPEYLAPEVLEDNDYGRAVDWWGLGVVMYEMMCGRLPFYNQDHEK--LFEL 360 (446)
T ss_dssp ECCCCCCCTTCC------------CCSSSCGGGCCHHHHHTSCCCTHHHHHHHHHHHHHHHHSSCSSCCSSHHH--HHHH
T ss_pred EccCCCceeccC-------CCcccccccCCccccCHhhcCCCCCCCccchhhhHHHHHHHhhCCCCCCCCCHHH--HHHH
Confidence 999999875311 1122334679999999999654 58999999999999999999999996542211 1111
Q ss_pred HHhcCChhhhhhcCCCCCCCCCCcHHHHHHHHHHHHHHhhhhhhhcchhhhHHHHHHHHHHhhccCCCCcCCCC-----C
Q 005045 620 VSMALPDHVMDILDPSMPLDEENDEEQIEEVIEEKEMMIHIDLEVNTKNKLEECFVSVLRIGLMCSTTSPRERI-----A 694 (717)
Q Consensus 620 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~cl~~~p~~Rp-----s 694 (717)
. ....... +...+..+.+++.+||+.||++|| |
T Consensus 361 i-----------~~~~~~~-------------------------------p~~~~~~~~~li~~~L~~dP~~R~~~~~~t 398 (446)
T 4ejn_A 361 I-----------LMEEIRF-------------------------------PRTLGPEAKSLLSGLLKKDPKQRLGGGSED 398 (446)
T ss_dssp H-----------HHCCCCC-------------------------------CTTSCHHHHHHHHHHTCSSTTTSTTCSTTT
T ss_pred H-----------HhCCCCC-------------------------------CccCCHHHHHHHHHHcccCHHHhCCCCCCC
Confidence 0 0001100 011245678999999999999999 9
Q ss_pred HHHHHH
Q 005045 695 MNVVVN 700 (717)
Q Consensus 695 ~~eil~ 700 (717)
++|+++
T Consensus 399 ~~ell~ 404 (446)
T 4ejn_A 399 AKEIMQ 404 (446)
T ss_dssp HHHHHT
T ss_pred HHHHHh
Confidence 999985
No 199
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=100.00 E-value=1e-36 Score=344.54 Aligned_cols=315 Identities=17% Similarity=0.151 Sum_probs=239.2
Q ss_pred CCCCCCEEECCCCcccccCCcCCCCCCCCCEEEccCccccccCCccccCCCCCCEEeccCCcCcccCChhhhccCCCCeE
Q 005045 32 HCTELRSFEASVNDFVGQIPNQLSSLTKLEIIGLGGSNLTGNVPAWIGNFSSLKALSLAWNNLRGSIPNELGQLSGLGFF 111 (717)
Q Consensus 32 ~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L 111 (717)
.+++++.|++++|.++...+..|.++++|++|+|++|.|++..|..|+.+++|++|+|++|.|++..|..|+++++|++|
T Consensus 49 ~l~~l~~l~l~~~~l~~lp~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L 128 (597)
T 3oja_B 49 TLNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVL 128 (597)
T ss_dssp GGCCCSEEEESSCEESEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEE
T ss_pred cCCCceEEEeeCCCCCCcCHHHHccCCCCcEEECCCCCCCCCChHHhcCCCCCCEEECCCCcCCCCCHHHHcCCCCCCEE
Confidence 34667777777777775555556677777777777777776666677777777777777777776666677777777777
Q ss_pred eccCCCCCCCCCccccCCCCccEEEcccCcccccCCcccccCCCCcceeecccccccccCCccCCCCCCCCEEeccCccc
Q 005045 112 TLYGNFISGIIPSSIYNISSIYYFSVTQNQLHGQLPTDVGLTLPNLKIFAGAVNYFTGSIPVSLSNASNLQVLDFAENGL 191 (717)
Q Consensus 112 ~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~~l~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~l 191 (717)
+|++|.|+++.+..|.++++|++|+|++|.++ .++...+..+++|+.|++++|.+++.. +..+++|+.|++++|.+
T Consensus 129 ~L~~n~l~~l~~~~~~~l~~L~~L~Ls~N~l~-~~~~~~~~~l~~L~~L~L~~N~l~~~~---~~~l~~L~~L~l~~n~l 204 (597)
T 3oja_B 129 VLERNDLSSLPRGIFHNTPKLTTLSMSNNNLE-RIEDDTFQATTSLQNLQLSSNRLTHVD---LSLIPSLFHANVSYNLL 204 (597)
T ss_dssp ECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC-BCCTTTTTTCTTCCEEECTTSCCSBCC---GGGCTTCSEEECCSSCC
T ss_pred EeeCCCCCCCCHHHhccCCCCCEEEeeCCcCC-CCChhhhhcCCcCcEEECcCCCCCCcC---hhhhhhhhhhhcccCcc
Confidence 77777777666666677777777777777776 455555557777777777777777542 45567788888888877
Q ss_pred cccCCCCccCCCCCCeeeccccccCCcccCchhhhhhhccCCCCCEEEeecCcccCcCchhhhhccccccEEecCCCccC
Q 005045 192 TGTIPGNFGSLKDLVRLNFDQNELGSREIGDLNFLKFLANCTSLEVLGLARNSFGGEMPISIANLSTHLRRLTMGENLMH 271 (717)
Q Consensus 192 ~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~~~~L~~L~l~~N~l~ 271 (717)
++ +...++|+.|++++|.+..++.. ..++|+.|+|++|.+++ +..+..+ ++|+.|+|++|.+.
T Consensus 205 ~~-----l~~~~~L~~L~ls~n~l~~~~~~---------~~~~L~~L~L~~n~l~~--~~~l~~l-~~L~~L~Ls~N~l~ 267 (597)
T 3oja_B 205 ST-----LAIPIAVEELDASHNSINVVRGP---------VNVELTILKLQHNNLTD--TAWLLNY-PGLVEVDLSYNELE 267 (597)
T ss_dssp SE-----EECCTTCSEEECCSSCCCEEECS---------CCSCCCEEECCSSCCCC--CGGGGGC-TTCSEEECCSSCCC
T ss_pred cc-----ccCCchhheeeccCCcccccccc---------cCCCCCEEECCCCCCCC--ChhhccC-CCCCEEECCCCccC
Confidence 73 23445788888888888766521 13578888888888884 3456666 58999999999998
Q ss_pred CCCCccccCCCCCCEEEccCCcCccccchhhhcCCCCCeEEcccCcCCCCCCcccccccccceeecccccccccCCcCcc
Q 005045 272 GNIPVGIGNLVNLNLLGLEGNNLSGSVPEVIGRLNKLEGLGLNVNKFSGLIPSSLGNLTILTRLWMEENRLEGSIPPSLG 351 (717)
Q Consensus 272 ~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~ 351 (717)
+..|..|.++++|+.|+|++|++++ +|..+..+++|+.|+|++|.+++ +|..+..+++|+.|+|++|.+++ +| +.
T Consensus 268 ~~~~~~~~~l~~L~~L~Ls~N~l~~-l~~~~~~l~~L~~L~Ls~N~l~~-i~~~~~~l~~L~~L~L~~N~l~~-~~--~~ 342 (597)
T 3oja_B 268 KIMYHPFVKMQRLERLYISNNRLVA-LNLYGQPIPTLKVLDLSHNHLLH-VERNQPQFDRLENLYLDHNSIVT-LK--LS 342 (597)
T ss_dssp EEESGGGTTCSSCCEEECTTSCCCE-EECSSSCCTTCCEEECCSSCCCC-CGGGHHHHTTCSEEECCSSCCCC-CC--CC
T ss_pred CCCHHHhcCccCCCEEECCCCCCCC-CCcccccCCCCcEEECCCCCCCc-cCcccccCCCCCEEECCCCCCCC-cC--hh
Confidence 8888899999999999999999994 67777889999999999999994 57778899999999999999984 33 77
Q ss_pred CcCCCceEEeecccCCCCCCc
Q 005045 352 NCQKLLVLNLSSNDLNGTIPK 372 (717)
Q Consensus 352 ~l~~L~~L~l~~N~l~~~~p~ 372 (717)
.+++|+.|++++|+|++.++.
T Consensus 343 ~~~~L~~L~l~~N~~~~~~~~ 363 (597)
T 3oja_B 343 THHTLKNLTLSHNDWDCNSLR 363 (597)
T ss_dssp TTCCCSEEECCSSCEEHHHHH
T ss_pred hcCCCCEEEeeCCCCCChhHH
Confidence 788999999999999876543
No 200
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=100.00 E-value=1.5e-36 Score=320.11 Aligned_cols=307 Identities=23% Similarity=0.354 Sum_probs=236.3
Q ss_pred CcCCCCCCEEECCCCcccccCCcCCCCCCCCCEEEccCccccccCCccccCCCCCCEEeccCCcCcccCChhhhccCCCC
Q 005045 30 LSHCTELRSFEASVNDFVGQIPNQLSSLTKLEIIGLGGSNLTGNVPAWIGNFSSLKALSLAWNNLRGSIPNELGQLSGLG 109 (717)
Q Consensus 30 ~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~ 109 (717)
+..+++|++|++++|.+. .+|. +..+++|++|++++|.+++ ++. +..+++|++|+|++|.++. ++ .|..+++|+
T Consensus 40 ~~~l~~L~~L~l~~~~i~-~~~~-~~~~~~L~~L~l~~n~i~~-~~~-~~~l~~L~~L~L~~n~i~~-~~-~~~~l~~L~ 113 (347)
T 4fmz_A 40 QEELESITKLVVAGEKVA-SIQG-IEYLTNLEYLNLNGNQITD-ISP-LSNLVKLTNLYIGTNKITD-IS-ALQNLTNLR 113 (347)
T ss_dssp HHHHTTCSEEECCSSCCC-CCTT-GGGCTTCCEEECCSSCCCC-CGG-GTTCTTCCEEECCSSCCCC-CG-GGTTCTTCS
T ss_pred chhcccccEEEEeCCccc-cchh-hhhcCCccEEEccCCcccc-chh-hhcCCcCCEEEccCCcccC-ch-HHcCCCcCC
Confidence 567778888888888877 4553 7778888888888888874 444 7788888888888888874 33 578888888
Q ss_pred eEeccCCCCCCCCCccccCCCCccEEEcccCcccccCCcccccCCCCcceeecccccccccCCccCCCCCCCCEEeccCc
Q 005045 110 FFTLYGNFISGIIPSSIYNISSIYYFSVTQNQLHGQLPTDVGLTLPNLKIFAGAVNYFTGSIPVSLSNASNLQVLDFAEN 189 (717)
Q Consensus 110 ~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~~l~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N 189 (717)
+|+|++|.+++..+ +..+++|++|++++|.....++. +..+++|+.|++++|.+....+ +..+++|++|++++|
T Consensus 114 ~L~l~~n~i~~~~~--~~~l~~L~~L~l~~n~~~~~~~~--~~~l~~L~~L~l~~~~~~~~~~--~~~l~~L~~L~l~~n 187 (347)
T 4fmz_A 114 ELYLNEDNISDISP--LANLTKMYSLNLGANHNLSDLSP--LSNMTGLNYLTVTESKVKDVTP--IANLTDLYSLSLNYN 187 (347)
T ss_dssp EEECTTSCCCCCGG--GTTCTTCCEEECTTCTTCCCCGG--GTTCTTCCEEECCSSCCCCCGG--GGGCTTCSEEECTTS
T ss_pred EEECcCCcccCchh--hccCCceeEEECCCCCCcccccc--hhhCCCCcEEEecCCCcCCchh--hccCCCCCEEEccCC
Confidence 88888888875433 77888888888888865434443 4577888888888888775443 778888888888888
Q ss_pred cccccCCCCccCCCCCCeeeccccccCCcccCchhhhhhhccCCCCCEEEeecCcccCcCchhhhhccccccEEecCCCc
Q 005045 190 GLTGTIPGNFGSLKDLVRLNFDQNELGSREIGDLNFLKFLANCTSLEVLGLARNSFGGEMPISIANLSTHLRRLTMGENL 269 (717)
Q Consensus 190 ~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~~~~L~~L~l~~N~ 269 (717)
.+++..+ +..+++|+.|++++|.+.... + +..+++|++|++++|.++ .++. +..+ ++|++|++++|.
T Consensus 188 ~l~~~~~--~~~l~~L~~L~l~~n~l~~~~------~--~~~~~~L~~L~l~~n~l~-~~~~-~~~l-~~L~~L~l~~n~ 254 (347)
T 4fmz_A 188 QIEDISP--LASLTSLHYFTAYVNQITDIT------P--VANMTRLNSLKIGNNKIT-DLSP-LANL-SQLTWLEIGTNQ 254 (347)
T ss_dssp CCCCCGG--GGGCTTCCEEECCSSCCCCCG------G--GGGCTTCCEEECCSSCCC-CCGG-GTTC-TTCCEEECCSSC
T ss_pred ccccccc--ccCCCccceeecccCCCCCCc------h--hhcCCcCCEEEccCCccC-CCcc-hhcC-CCCCEEECCCCc
Confidence 8884433 778888888888888888764 2 778888888888888888 4444 5555 588888888888
Q ss_pred cCCCCCccccCCCCCCEEEccCCcCccccchhhhcCCCCCeEEcccCcCCCCCCcccccccccceeecccccccccCCcC
Q 005045 270 MHGNIPVGIGNLVNLNLLGLEGNNLSGSVPEVIGRLNKLEGLGLNVNKFSGLIPSSLGNLTILTRLWMEENRLEGSIPPS 349 (717)
Q Consensus 270 l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~ 349 (717)
+++. ..+..+++|+.|++++|++++. ..+..+++|+.|++++|++++..+..|..+++|+.|+|++|++++..|
T Consensus 255 l~~~--~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~-- 328 (347)
T 4fmz_A 255 ISDI--NAVKDLTKLKMLNVGSNQISDI--SVLNNLSQLNSLFLNNNQLGNEDMEVIGGLTNLTTLFLSQNHITDIRP-- 328 (347)
T ss_dssp CCCC--GGGTTCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCGGGHHHHHTCTTCSEEECCSSSCCCCGG--
T ss_pred cCCC--hhHhcCCCcCEEEccCCccCCC--hhhcCCCCCCEEECcCCcCCCcChhHhhccccCCEEEccCCccccccC--
Confidence 8753 5688888999999999988853 458888899999999999888888888888999999999999885545
Q ss_pred ccCcCCCceEEeecccCC
Q 005045 350 LGNCQKLLVLNLSSNDLN 367 (717)
Q Consensus 350 ~~~l~~L~~L~l~~N~l~ 367 (717)
+..+++|+.|++++|+|+
T Consensus 329 ~~~l~~L~~L~l~~N~i~ 346 (347)
T 4fmz_A 329 LASLSKMDSADFANQVIK 346 (347)
T ss_dssp GGGCTTCSEESSSCC---
T ss_pred hhhhhccceeehhhhccc
Confidence 888889999999999875
No 201
>3sv0_A Casein kinase I-like; typical kinase domain fold, cytosol, transferase; 2.00A {Oryza sativa japonica group}
Probab=100.00 E-value=7.8e-38 Score=340.94 Aligned_cols=270 Identities=20% Similarity=0.268 Sum_probs=204.6
Q ss_pred cccccccccccCcccccceEEEEe-CCCchhhhHHhHhhhhhHHHHHHHHHHHHhcCCCCceeEEEEeeccccCCCCceE
Q 005045 387 STDNFSKENLIGTGSFGSVYKGTL-GDGTIVAIKVLKLQQQGALKSFIDECNALKSTRHRNILRVITACSSVDLEGNDFK 465 (717)
Q Consensus 387 ~~~~y~~~~~ig~g~~g~v~~~~~-~~~~~vavK~~~~~~~~~~~~~~~e~~~l~~l~h~ni~~~~~~~~~~~~~~~~~~ 465 (717)
..++|++.++||+|+||.||+|++ .+++.||||++..... ...+..|+++++.+.|++.+..+..+ ....+..
T Consensus 5 i~~~y~i~~~LG~G~fG~Vy~a~~~~~~~~vAvK~~~~~~~--~~~~~~E~~il~~L~~~~~i~~i~~~----~~~~~~~ 78 (483)
T 3sv0_A 5 VGNKFRLGRKIGSGSFGEIYLGTNIQTNEEVAIKLENVKTK--HPQLLYESKIYRILQGGTGIPNVRWF----GVEGDYN 78 (483)
T ss_dssp ETTTEECCCCCEECSSCEEEEEEETTTCCEEEEEEEETTCS--SCCHHHHHHHHHHTTTSTTCCCEEEE----EEETTEE
T ss_pred cCCcEEEEEEEeeCCCEEEEEEEECCCCcEEEEEEeccccc--cHHHHHHHHHHHHhcCCCCCCeEEEE----EeeCCEE
Confidence 467999999999999999999996 4799999998764432 24577899999999775444333333 2345688
Q ss_pred EEEEecCCCCChhhhccCCCCCcccccccCHHHHHHHHHHHHHHHHHHHhcCCCCeeecCCCCCCEEe---CCCCceEEe
Q 005045 466 ALVFEFMSNGNLDQWLHPSPAEHYQFKKLSVIQRLNIAIDVASALDYLHHHCDTPIAHCDLKPSNVLL---DKDMTAHVG 542 (717)
Q Consensus 466 ~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~dlkp~NIll---~~~~~~kl~ 542 (717)
++||||+ +++|.+++.... ..+++..++.++.||+.||+|||+. +|+||||||+||++ +.++.+||+
T Consensus 79 ~lvme~~-g~sL~~ll~~~~------~~l~~~~~~~i~~qi~~aL~yLH~~---gIvHrDIKP~NILl~~~~~~~~vkL~ 148 (483)
T 3sv0_A 79 VLVMDLL-GPSLEDLFNFCS------RKLSLKTVLMLADQMINRVEFVHSK---SFLHRDIKPDNFLMGLGRRANQVYII 148 (483)
T ss_dssp EEEEECC-CCBHHHHHHHTT------TCCCHHHHHHHHHHHHHHHHHHHHT---TEECCCCCGGGEEECCGGGTTCEEEC
T ss_pred EEEEECC-CCCHHHHHHhhc------CCCCHHHHHHHHHHHHHHHHHHHHC---CEeecccCcceEEEecCCCCCeEEEE
Confidence 9999999 899999997432 5689999999999999999999998 99999999999999 588899999
Q ss_pred eeccchhcccccCCCCCCcceeecccccccccCCCccCC-CCCcccchhhHHHHHHHHHhCCCCCCCCCCCchhhhHHHH
Q 005045 543 DFGLAKFLFEISDNPSKNQTVSIGLKGSIGYIPPEHMNG-QVSILGDIYSYGILLLEMFTGKRPTGDMFKDDFSIHMFVS 621 (717)
Q Consensus 543 Dfg~~~~~~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~-~~~~~sDvwslG~vl~elltg~~p~~~~~~~~~~~~~~~~ 621 (717)
|||++..+..................||..|+|||++.+ .++.++|||||||++|||++|..||...........
T Consensus 149 DFGla~~~~~~~~~~~~~~~~~~~~~gt~~Y~aPE~~~~~~~s~~sDvwSlGvil~elltG~~Pf~~~~~~~~~~~---- 224 (483)
T 3sv0_A 149 DFGLAKKYRDTSTHQHIPYRENKNLTGTARYASVNTHLGIEQSRRDDLESLGYVLMYFLRGSLPWQGLKAGTKKQK---- 224 (483)
T ss_dssp CCTTCEECBCTTTCCBCCCCCCCCCCSCTTTCCHHHHTTCCCCHHHHHHHHHHHHHHHHHSSCTTSSCCCSSHHHH----
T ss_pred eCCcceeccCCccccccccccccccCCCccccCHHHhcCCCCChHHHHHHHHHHHHHHHhCCCCCccccchhHHHH----
Confidence 999998764332222222223345679999999999665 589999999999999999999999977543221110
Q ss_pred hcCChhhhhhcCCCCCCCCCCcHHHHHHHHHHHHHHhhhhhhhcchhhhHHHHHHHHHHhhccCCCCcCCCCCHHHHHHH
Q 005045 622 MALPDHVMDILDPSMPLDEENDEEQIEEVIEEKEMMIHIDLEVNTKNKLEECFVSVLRIGLMCSTTSPRERIAMNVVVNN 701 (717)
Q Consensus 622 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~cl~~~p~~Rps~~eil~~ 701 (717)
+..+.... .... .......++.++.+++.+||+.+|++||++.+|++.
T Consensus 225 -------------------------~~~i~~~~-~~~~------~~~l~~~~p~~l~~li~~cl~~dP~~RPs~~el~~~ 272 (483)
T 3sv0_A 225 -------------------------YEKISEKK-VATS------IEALCRGYPTEFASYFHYCRSLRFDDKPDYSYLKRL 272 (483)
T ss_dssp -------------------------HHHHHHHH-HHSC------HHHHHTTSCHHHHHHHHHHHTCCTTCCCCHHHHHHH
T ss_pred -------------------------HHHHhhcc-cccc------HHHHhcCCcHHHHHHHHHHhcCChhhCcCHHHHHHH
Confidence 00000000 0000 001112346778999999999999999999999999
Q ss_pred HHHHHHH
Q 005045 702 LKTIRNC 708 (717)
Q Consensus 702 l~~i~~~ 708 (717)
|+.+...
T Consensus 273 L~~l~~~ 279 (483)
T 3sv0_A 273 FRDLFIR 279 (483)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 9999764
No 202
>3nyv_A Calmodulin-domain protein kinase 1; serine/threonine protein kinase, transferase, calcium-bindin binding, EF hand, bumped kinase inhibitor; HET: MSE DTQ; 1.88A {Toxoplasma gondii} PDB: 3i79_A* 3i7b_A* 3n51_A* 3i7c_A* 3sx9_A* 3sxf_A* 3t3u_A* 3t3v_A* 3upx_A* 3upz_A* 3v51_A* 3v5p_A* 3v5t_A* 3ku2_A* 3hx4_A*
Probab=100.00 E-value=2.2e-38 Score=349.28 Aligned_cols=252 Identities=26% Similarity=0.361 Sum_probs=203.0
Q ss_pred ccccccccccccCcccccceEEEEeC-CCchhhhHHhHhhh---hhHHHHHHHHHHHHhcCCCCceeEEEEeeccccCCC
Q 005045 386 KSTDNFSKENLIGTGSFGSVYKGTLG-DGTIVAIKVLKLQQ---QGALKSFIDECNALKSTRHRNILRVITACSSVDLEG 461 (717)
Q Consensus 386 ~~~~~y~~~~~ig~g~~g~v~~~~~~-~~~~vavK~~~~~~---~~~~~~~~~e~~~l~~l~h~ni~~~~~~~~~~~~~~ 461 (717)
...++|++.+.||+|+||.||+|+++ +++.||+|++.... ......+.+|++++++++||||+++++++ ..
T Consensus 23 ~~~~~y~~~~~lg~G~~g~V~~~~~~~~~~~~avK~~~~~~~~~~~~~~~~~~E~~~l~~l~hpniv~~~~~~-----~~ 97 (484)
T 3nyv_A 23 IFSDRYKGQRVLGKGSFGEVILCKDKITGQECAVKVISKRQVKQKTDKESLLREVQLLKQLDHPNIMKLYEFF-----ED 97 (484)
T ss_dssp CHHHHEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEETTTCCBSSCHHHHHHHHHHHTTCCCTTBCCEEEEE-----EC
T ss_pred cccCceEEeeEEecCCCEEEEEEEECCCCCEEEEEEEEhhhcccchHHHHHHHHHHHHHhCCCCCCCcEEEEE-----Ee
Confidence 44678999999999999999999976 89999999986432 33467889999999999999999999995 44
Q ss_pred CceEEEEEecCCCCChhhhccCCCCCcccccccCHHHHHHHHHHHHHHHHHHHhcCCCCeeecCCCCCCEEe---CCCCc
Q 005045 462 NDFKALVFEFMSNGNLDQWLHPSPAEHYQFKKLSVIQRLNIAIDVASALDYLHHHCDTPIAHCDLKPSNVLL---DKDMT 538 (717)
Q Consensus 462 ~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~dlkp~NIll---~~~~~ 538 (717)
.+..++||||+.+++|.+++... ..+++..+..++.||+.||+|||+. +|+||||||+||++ +.++.
T Consensus 98 ~~~~~lv~e~~~~~~L~~~~~~~-------~~~~~~~~~~i~~qi~~~l~~lH~~---~ivH~Dlkp~Nil~~~~~~~~~ 167 (484)
T 3nyv_A 98 KGYFYLVGEVYTGGELFDEIISR-------KRFSEVDAARIIRQVLSGITYMHKN---KIVHRDLKPENLLLESKSKDAN 167 (484)
T ss_dssp SSEEEEEECCCCSCBHHHHHHTC-------SCCBHHHHHHHHHHHHHHHHHHHHT---TCCCSCCCGGGEEESSSSTTCC
T ss_pred CCEEEEEEecCCCCCHHHHHHhc-------CCCCHHHHHHHHHHHHHHHHHHHHC---CeeeCCCCHHHEEEecCCCCCc
Confidence 56899999999999999998755 5689999999999999999999998 99999999999999 56789
Q ss_pred eEEeeeccchhcccccCCCCCCcceeecccccccccCCCccCCCCCcccchhhHHHHHHHHHhCCCCCCCCCCCchhhhH
Q 005045 539 AHVGDFGLAKFLFEISDNPSKNQTVSIGLKGSIGYIPPEHMNGQVSILGDIYSYGILLLEMFTGKRPTGDMFKDDFSIHM 618 (717)
Q Consensus 539 ~kl~Dfg~~~~~~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~sDvwslG~vl~elltg~~p~~~~~~~~~~~~~ 618 (717)
+||+|||.+..... ........||+.|+|||++.+.++.++||||+||++|+|++|..||...... ....
T Consensus 168 ~kl~Dfg~a~~~~~--------~~~~~~~~gt~~y~aPE~~~~~~~~~~DiwslG~il~~ll~g~~pf~~~~~~--~~~~ 237 (484)
T 3nyv_A 168 IRIIDFGLSTHFEA--------SKKMKDKIGTAYYIAPEVLHGTYDEKCDVWSTGVILYILLSGCPPFNGANEY--DILK 237 (484)
T ss_dssp EEECCTTHHHHBCC--------CCSHHHHTTGGGTCCHHHHHTCCCTHHHHHHHHHHHHHHHHSSCSSCCSSHH--HHHH
T ss_pred EEEEeeeeeEEccc--------ccccccCCCCccccCceeecCCCCCcceeHHHHHHHHHHHHCCCCCCCCCHH--HHHH
Confidence 99999999987521 1122345699999999999889999999999999999999999999764221 1111
Q ss_pred HHHhcCChhhhhhcCCCCCCCCCCcHHHHHHHHHHHHHHhhhhhhhcchhhhHHHHHHHHHHhhccCCCCcCCCCCHHHH
Q 005045 619 FVSMALPDHVMDILDPSMPLDEENDEEQIEEVIEEKEMMIHIDLEVNTKNKLEECFVSVLRIGLMCSTTSPRERIAMNVV 698 (717)
Q Consensus 619 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~cl~~~p~~Rps~~ei 698 (717)
.+. ........ +....++..+.+++.+||+.+|++|||+.|+
T Consensus 238 ~i~-----------~~~~~~~~---------------------------~~~~~~s~~~~~li~~~L~~dp~~R~s~~e~ 279 (484)
T 3nyv_A 238 KVE-----------KGKYTFEL---------------------------PQWKKVSESAKDLIRKMLTYVPSMRISARDA 279 (484)
T ss_dssp HHH-----------HCCCCCCS---------------------------GGGGGSCHHHHHHHHHHTCSSGGGSCCHHHH
T ss_pred HHH-----------cCCCCCCC---------------------------cccccCCHHHHHHHHHHCCCChhHCcCHHHH
Confidence 111 00000000 0111235567899999999999999999999
Q ss_pred HH
Q 005045 699 VN 700 (717)
Q Consensus 699 l~ 700 (717)
++
T Consensus 280 l~ 281 (484)
T 3nyv_A 280 LD 281 (484)
T ss_dssp HT
T ss_pred hh
Confidence 85
No 203
>3lij_A Calcium/calmodulin dependent protein kinase with A kinase domain and 4 calmodulin...; transferase, calcium dependent protein kinase; HET: ANP; 1.90A {Cryptosporidium parvum} PDB: 3hzt_A* 3dxn_A 3l19_A*
Probab=100.00 E-value=6.7e-38 Score=345.84 Aligned_cols=255 Identities=22% Similarity=0.315 Sum_probs=197.9
Q ss_pred ccccccccccccccCcccccceEEEEeC-CCchhhhHHhHhhh--hhHHHHHHHHHHHHhcCCCCceeEEEEeeccccCC
Q 005045 384 ISKSTDNFSKENLIGTGSFGSVYKGTLG-DGTIVAIKVLKLQQ--QGALKSFIDECNALKSTRHRNILRVITACSSVDLE 460 (717)
Q Consensus 384 ~~~~~~~y~~~~~ig~g~~g~v~~~~~~-~~~~vavK~~~~~~--~~~~~~~~~e~~~l~~l~h~ni~~~~~~~~~~~~~ 460 (717)
.....++|++.++||+|+||.||+|+++ +++.||+|++.... ......+.+|+++++.++||||+++++++.
T Consensus 32 ~~~~~~~y~~~~~lG~G~~g~V~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~E~~~l~~l~hpniv~~~~~~~----- 106 (494)
T 3lij_A 32 KGHLSEMYQRVKKLGSGAYGEVLLCRDKVTHVERAIKIIRKTSVSTSSNSKLLEEVAVLKLLDHPNIMKLYDFFE----- 106 (494)
T ss_dssp BCCHHHHEEEEEEEECC---EEEEEEETTTCCEEEEEEEEC-----CTTHHHHHHHHHHTTCCCTTBCCEEEEEE-----
T ss_pred CCchhcCeEEeeEEecCCCEEEEEEEECCCCcEEEEEEEeccccCchHHHHHHHHHHHHHhCCCCCCCeEEEEEE-----
Confidence 3345668999999999999999999975 78899999986442 233567889999999999999999999954
Q ss_pred CCceEEEEEecCCCCChhhhccCCCCCcccccccCHHHHHHHHHHHHHHHHHHHhcCCCCeeecCCCCCCEEeCCC---C
Q 005045 461 GNDFKALVFEFMSNGNLDQWLHPSPAEHYQFKKLSVIQRLNIAIDVASALDYLHHHCDTPIAHCDLKPSNVLLDKD---M 537 (717)
Q Consensus 461 ~~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~dlkp~NIll~~~---~ 537 (717)
+....|+||||+++++|.+++... ..+++..+..++.||+.||+|||+. +|+||||||+||+++.. +
T Consensus 107 ~~~~~~lv~e~~~~g~L~~~~~~~-------~~~~~~~~~~i~~qi~~~l~~lH~~---~ivH~Dlkp~Nil~~~~~~~~ 176 (494)
T 3lij_A 107 DKRNYYLVMECYKGGELFDEIIHR-------MKFNEVDAAVIIKQVLSGVTYLHKH---NIVHRDLKPENLLLESKEKDA 176 (494)
T ss_dssp CSSEEEEEEECCCSCBHHHHHHHH-------SSCCHHHHHHHHHHHHHHHHHHHHT---TEECSCCSGGGEEESCSSTTC
T ss_pred eCCEEEEEEecCCCCcHHHHHHHc-------CCCCHHHHHHHHHHHHHHHHHHHHC---CceeccCChhhEEEeCCCCCC
Confidence 456899999999999999988644 5689999999999999999999998 99999999999999764 4
Q ss_pred ceEEeeeccchhcccccCCCCCCcceeecccccccccCCCccCCCCCcccchhhHHHHHHHHHhCCCCCCCCCCCchhhh
Q 005045 538 TAHVGDFGLAKFLFEISDNPSKNQTVSIGLKGSIGYIPPEHMNGQVSILGDIYSYGILLLEMFTGKRPTGDMFKDDFSIH 617 (717)
Q Consensus 538 ~~kl~Dfg~~~~~~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~sDvwslG~vl~elltg~~p~~~~~~~~~~~~ 617 (717)
.+||+|||++...... .......||+.|+|||++.+.++.++||||+||++|+|++|..||....... ..
T Consensus 177 ~~kl~DfG~a~~~~~~--------~~~~~~~gt~~y~aPE~l~~~~~~~~DiwslG~il~~ll~g~~pf~~~~~~~--~~ 246 (494)
T 3lij_A 177 LIKIVDFGLSAVFENQ--------KKMKERLGTAYYIAPEVLRKKYDEKCDVWSIGVILFILLAGYPPFGGQTDQE--IL 246 (494)
T ss_dssp CEEECCCTTCEECBTT--------BCBCCCCSCTTTCCHHHHTTCBCTHHHHHHHHHHHHHHHHSSCSSCCSSHHH--HH
T ss_pred cEEEEECCCCeECCCC--------ccccccCCCcCeeCHHHHcccCCCchhHHHHHHHHHHHHhCCCCCCCCCHHH--HH
Confidence 6999999999765211 1223456999999999998889999999999999999999999997642211 11
Q ss_pred HHHHhcCChhhhhhcCCCCCCCCCCcHHHHHHHHHHHHHHhhhhhhhcchhhhHHHHHHHHHHhhccCCCCcCCCCCHHH
Q 005045 618 MFVSMALPDHVMDILDPSMPLDEENDEEQIEEVIEEKEMMIHIDLEVNTKNKLEECFVSVLRIGLMCSTTSPRERIAMNV 697 (717)
Q Consensus 618 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~cl~~~p~~Rps~~e 697 (717)
..... ....... +....++..+.+++.+||+.+|++|||+.|
T Consensus 247 ~~i~~-----------~~~~~~~---------------------------~~~~~~s~~~~~li~~~L~~dp~~R~s~~e 288 (494)
T 3lij_A 247 RKVEK-----------GKYTFDS---------------------------PEWKNVSEGAKDLIKQMLQFDSQRRISAQQ 288 (494)
T ss_dssp HHHHH-----------TCCCCCS---------------------------GGGTTSCHHHHHHHHHHTCSSTTTSCCHHH
T ss_pred HHHHh-----------CCCCCCc---------------------------hhcccCCHHHHHHHHHHCCCChhhCccHHH
Confidence 11110 0000000 000122456789999999999999999999
Q ss_pred HHHH
Q 005045 698 VVNN 701 (717)
Q Consensus 698 il~~ 701 (717)
+++.
T Consensus 289 ~l~h 292 (494)
T 3lij_A 289 ALEH 292 (494)
T ss_dssp HHTC
T ss_pred HhcC
Confidence 9864
No 204
>3gxj_A TGF-beta receptor type-1; ALK5, kinase, inhibitor, quinazoline, aortic aneurysm, ATP-binding, craniosynostosis, disease mutation, disulfide bond; HET: 855; 1.70A {Homo sapiens} PDB: 1vjy_A* 3gxl_A* 3hmm_A* 3tzm_A* 2wot_A* 2wou_A* 1py5_A* 1rw8_A*
Probab=100.00 E-value=3.8e-40 Score=340.67 Aligned_cols=270 Identities=24% Similarity=0.343 Sum_probs=187.5
Q ss_pred ccccccccccCcccccceEEEEeCCCchhhhHHhHhhhhhHHHHHHHHHHHHhc--CCCCceeEEEEeeccccCCCCceE
Q 005045 388 TDNFSKENLIGTGSFGSVYKGTLGDGTIVAIKVLKLQQQGALKSFIDECNALKS--TRHRNILRVITACSSVDLEGNDFK 465 (717)
Q Consensus 388 ~~~y~~~~~ig~g~~g~v~~~~~~~~~~vavK~~~~~~~~~~~~~~~e~~~l~~--l~h~ni~~~~~~~~~~~~~~~~~~ 465 (717)
.++|++.+.||+|+||.||+|++. ++.||+|++.... ...+..|.+++.. ++||||+++++++.... ......
T Consensus 2 ~~~y~~~~~lg~G~~g~V~~~~~~-~~~vavK~~~~~~---~~~~~~e~~~~~~~~~~h~~i~~~~~~~~~~~-~~~~~~ 76 (303)
T 3gxj_A 2 ARTIVLQESIGKGRFGEVWRGKWR-GEEVAVKIFSSRE---ERSWFREAEIYQTVMLRHENILGFIAADNKDN-GTWTQL 76 (303)
T ss_dssp GGGCCCCEEEEECSSSEEEEC-CT-TSCEEEEECC-TT---HHHHHHHHHHHTSTTCCC-CBCCEEEEEEEEC-SSSEEE
T ss_pred cceeeehhhccCCCCeEEEEEEEc-CcceEEEEecccc---hhhHHHHHHHHHHHhccCcceeeeeeecccCC-Ccccee
Confidence 478999999999999999999874 8899999986432 3456678888887 79999999999865432 122378
Q ss_pred EEEEecCCCCChhhhccCCCCCcccccccCHHHHHHHHHHHHHHHHHHH--------hcCCCCeeecCCCCCCEEeCCCC
Q 005045 466 ALVFEFMSNGNLDQWLHPSPAEHYQFKKLSVIQRLNIAIDVASALDYLH--------HHCDTPIAHCDLKPSNVLLDKDM 537 (717)
Q Consensus 466 ~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~i~~~i~~~l~~LH--------~~~~~~ivH~dlkp~NIll~~~~ 537 (717)
++||||+++++|.+++.. ..+++..+..++.|++.|++||| +. +|+||||||+||+++.++
T Consensus 77 ~lv~e~~~~g~L~~~l~~--------~~~~~~~~~~~~~~i~~~l~~lH~~~~~~~~~~---~ivH~Dlkp~Nil~~~~~ 145 (303)
T 3gxj_A 77 WLVSDYHEHGSLFDYLNR--------YTVTVEGMIKLALSTASGLAHLHMEIVGTQGKP---AIAHRDLKSKNILVKKNG 145 (303)
T ss_dssp EEEEECCTTCCHHHHHHH--------CCBCC-CHHHHC-CHHHHHC-CCCCBCSTTCBC----CCCSCCCGGGC-CCTTC
T ss_pred EEEEeccCCCCHHHHHhc--------cCcchHHHHHHHHHHHHHHHHHHHHHhhhccCC---CEeeCcCCHHHeEECCCC
Confidence 999999999999999964 34677889999999999999999 65 999999999999999999
Q ss_pred ceEEeeeccchhcccccCCCCCCcceeecccccccccCCCccCCC-------CCcccchhhHHHHHHHHHhC--------
Q 005045 538 TAHVGDFGLAKFLFEISDNPSKNQTVSIGLKGSIGYIPPEHMNGQ-------VSILGDIYSYGILLLEMFTG-------- 602 (717)
Q Consensus 538 ~~kl~Dfg~~~~~~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~-------~~~~sDvwslG~vl~elltg-------- 602 (717)
.+||+|||.+......... .........||+.|+|||++.+. ++.++|||||||++|||++|
T Consensus 146 ~~kl~DFg~a~~~~~~~~~---~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~~~~~~DiwslG~il~el~~g~~~~~~~~ 222 (303)
T 3gxj_A 146 TCCIADLGLAVRHDSATDT---IDIAPNHRVGTKRYMAPEVLDDSINMKHFESFKRADIYAMGLVFWEIARRCSIGGIHE 222 (303)
T ss_dssp CC-BCCCCC-CCEETTTTE---ESCC-----CCGGGCCHHHHTTCSCTTCHHHHHHHHHHC-CCCC-CTGGGBCBTTBC-
T ss_pred CEEEeecCcceeccCCCcc---cccccCCCCcCccccCHhhhcCcccccccccCcchhHHHHHHHHHHHHhcCCCccccc
Confidence 9999999999765222111 01112334689999999997654 23689999999999999999
Q ss_pred --CCCCCCCCCCchhhhHHHHhcCChhhhhhcCCCCCCCCCCcHHHHHHHHHHHHHHhhhhhhhcchhhhHHHHHHHHHH
Q 005045 603 --KRPTGDMFKDDFSIHMFVSMALPDHVMDILDPSMPLDEENDEEQIEEVIEEKEMMIHIDLEVNTKNKLEECFVSVLRI 680 (717)
Q Consensus 603 --~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l 680 (717)
..||.......... ......+......... .......+++..+.++
T Consensus 223 ~~~~p~~~~~~~~~~~--------~~~~~~~~~~~~~~~~------------------------~~~~~~~~~~~~l~~l 270 (303)
T 3gxj_A 223 DYQLPYYDLVPSDPSV--------EEMRKVVCEQKLRPNI------------------------PNRWQSCEALRVMAKI 270 (303)
T ss_dssp CCCCTTTTTCC-CCCC--------C-CHHHHTTSCCCCCC------------------------CGGGGSSHHHHHHHHH
T ss_pred eeeccccccCCCCccH--------HHHHHHHHHhhcCCCc------------------------cccccchhhHHHHHHH
Confidence 55554332211111 1111112222221111 1111233567789999
Q ss_pred hhccCCCCcCCCCCHHHHHHHHHHHHHH
Q 005045 681 GLMCSTTSPRERIAMNVVVNNLKTIRNC 708 (717)
Q Consensus 681 i~~cl~~~p~~Rps~~eil~~l~~i~~~ 708 (717)
+.+||+.+|++|||++||++.|+++.++
T Consensus 271 i~~cl~~dP~~Rps~~~i~~~L~~l~~~ 298 (303)
T 3gxj_A 271 MRECWYANGAARLTALRIKKTLSQLSQQ 298 (303)
T ss_dssp HHTTCCSSGGGSCCHHHHHHHHHC-CCC
T ss_pred HHHHhccCcccCCCHHHHHHHHHHhhhh
Confidence 9999999999999999999999988754
No 205
>3ll6_A Cyclin G-associated kinase; transferase, protein kinase, serine/threonine kinase, cyclin clathrine, membrane trafficking, structural genomics; 2.10A {Homo sapiens}
Probab=100.00 E-value=5.2e-38 Score=329.84 Aligned_cols=281 Identities=22% Similarity=0.251 Sum_probs=197.8
Q ss_pred cCCCCcccccccccccccccccCcccccceEEEEeC-CCchhhhHHhHhhhhhHHHHHHHHHHHHhcCC-CCceeEEEEe
Q 005045 376 QSGMSYSDISKSTDNFSKENLIGTGSFGSVYKGTLG-DGTIVAIKVLKLQQQGALKSFIDECNALKSTR-HRNILRVITA 453 (717)
Q Consensus 376 ~~~~s~~~~~~~~~~y~~~~~ig~g~~g~v~~~~~~-~~~~vavK~~~~~~~~~~~~~~~e~~~l~~l~-h~ni~~~~~~ 453 (717)
...+....+.....+|++.+.||+|+||.||+|++. +++.||+|++........+.+.+|+.+++++. ||||++++++
T Consensus 15 ~~~~~~~~~~~~~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~e~~~l~~l~~h~~iv~~~~~ 94 (337)
T 3ll6_A 15 QSDFVGQTVELGELRLRVRRVLAEGGFAFVYEAQDVGSGREYALKRLLSNEEEKNRAIIQEVCFMKKLSGHPNIVQFCSA 94 (337)
T ss_dssp CCSSTTCEEEETTEEEEEEEEEECCSSEEEEEEEETTTCCEEEEEEEEESSHHHHHHHHHHHHHHHHHTTSTTBCCEEEE
T ss_pred HHHhhcceeeccCceEEEEEEEccCCceEEEEEEECCCCcEEEEEEecCCchHHHHHHHHHHHHHHHhccCCChhhcccc
Confidence 344556667777889999999999999999999965 78999999986655556678899999999995 9999999998
Q ss_pred ecccc---CCCCceEEEEEecCCCCChhhhccCCCCCcccccccCHHHHHHHHHHHHHHHHHHHhcCCCC--eeecCCCC
Q 005045 454 CSSVD---LEGNDFKALVFEFMSNGNLDQWLHPSPAEHYQFKKLSVIQRLNIAIDVASALDYLHHHCDTP--IAHCDLKP 528 (717)
Q Consensus 454 ~~~~~---~~~~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~i~~~i~~~l~~LH~~~~~~--ivH~dlkp 528 (717)
+.... .......++||||+. |+|.+++.... ....+++..+..++.||+.||+|||+. + |+||||||
T Consensus 95 ~~~~~~~~~~~~~~~~lv~e~~~-g~L~~~l~~~~----~~~~~~~~~~~~i~~qi~~~l~~LH~~---~~~ivH~Dikp 166 (337)
T 3ll6_A 95 ASIGKEESDTGQAEFLLLTELCK-GQLVEFLKKME----SRGPLSCDTVLKIFYQTCRAVQHMHRQ---KPPIIHRDLKV 166 (337)
T ss_dssp EEECTTTSTTSSEEEEEEEECCS-EEHHHHHHHHH----TTCSCCHHHHHHHHHHHHHHHHHHHTS---SSCCBCCCCCG
T ss_pred ccccccccccCCceEEEEEEecC-CCHHHHHHHhh----ccCCCCHHHHHHHHHHHHHHHHHHHhC---CCCEEEccCCc
Confidence 74321 144556899999995 79988876421 114689999999999999999999997 8 99999999
Q ss_pred CCEEeCCCCceEEeeeccchhcccccCCCCC-----CcceeecccccccccCCCccC---C-CCCcccchhhHHHHHHHH
Q 005045 529 SNVLLDKDMTAHVGDFGLAKFLFEISDNPSK-----NQTVSIGLKGSIGYIPPEHMN---G-QVSILGDIYSYGILLLEM 599 (717)
Q Consensus 529 ~NIll~~~~~~kl~Dfg~~~~~~~~~~~~~~-----~~~~~~~~~~~~~y~aPE~~~---~-~~~~~sDvwslG~vl~el 599 (717)
+||+++.++.+||+|||.+............ .........+++.|+|||++. + .++.++|||||||++|+|
T Consensus 167 ~NIl~~~~~~~kl~Dfg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~y~aPE~~~~~~~~~~~~~~Dv~slG~il~el 246 (337)
T 3ll6_A 167 ENLLLSNQGTIKLCDFGSATTISHYPDYSWSAQRRALVEEEITRNTTPMYRTPEIIDLYSNFPIGEKQDIWALGCILYLL 246 (337)
T ss_dssp GGCEECTTSCEEBCCCTTCBCCSSCC-------------------------------CCTTSCSSHHHHHHHHHHHHHHH
T ss_pred ccEEECCCCCEEEecCccceeccccCcccccccccccchhhccccCCCCcCChhhhhccccCCCChHHhHHHHHHHHHHH
Confidence 9999999999999999999875322111000 001112345899999999972 3 478999999999999999
Q ss_pred HhCCCCCCCCCCCchhhhHHHHhcCChhhhhhcCCCCCCCCCCcHHHHHHHHHHHHHHhhhhhhhcchhhhHHHHHHHHH
Q 005045 600 FTGKRPTGDMFKDDFSIHMFVSMALPDHVMDILDPSMPLDEENDEEQIEEVIEEKEMMIHIDLEVNTKNKLEECFVSVLR 679 (717)
Q Consensus 600 ltg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 679 (717)
++|..||........ ......... ...++..+.+
T Consensus 247 ~~g~~p~~~~~~~~~-----------------~~~~~~~~~-----------------------------~~~~~~~~~~ 280 (337)
T 3ll6_A 247 CFRQHPFEDGAKLRI-----------------VNGKYSIPP-----------------------------HDTQYTVFHS 280 (337)
T ss_dssp HHSSCCC-----------------------------CCCCT-----------------------------TCCSSGGGHH
T ss_pred HhCCCCCcchhHHHh-----------------hcCcccCCc-----------------------------ccccchHHHH
Confidence 999999965322110 000000000 0011234678
Q ss_pred HhhccCCCCcCCCCCHHHHHHHHHHHHHHHH
Q 005045 680 IGLMCSTTSPRERIAMNVVVNNLKTIRNCFL 710 (717)
Q Consensus 680 li~~cl~~~p~~Rps~~eil~~l~~i~~~~~ 710 (717)
++.+||+.+|++|||+.|+++.|+.+.....
T Consensus 281 li~~~l~~~p~~Rps~~e~l~~l~~~~~~~~ 311 (337)
T 3ll6_A 281 LIRAMLQVNPEERLSIAEVVHQLQEIAAARN 311 (337)
T ss_dssp HHHHHSCSSGGGSCCHHHHHHHHHHHHHHTT
T ss_pred HHHHHccCChhhCcCHHHHHHHHHHHHhccC
Confidence 9999999999999999999999999987543
No 206
>2rku_A Serine/threonine-protein kinase PLK1; structure of PLK1, selectivity residues, POLO-like K structure based drug design, ATP-binding; HET: R78 TLA SRT TAR; 1.95A {Homo sapiens} PDB: 2v5q_A 2yac_A* 4a4l_A* 4a4o_A* 3kb7_A* 3d5w_A* 3d5u_A* 3d5v_A 3db8_A* 3dbc_A* 3dbd_A* 3d5x_A* 3db6_A* 3dbe_A* 3dbf_A*
Probab=100.00 E-value=7.2e-38 Score=322.04 Aligned_cols=250 Identities=21% Similarity=0.302 Sum_probs=200.3
Q ss_pred ccccccccccccCcccccceEEEEeC-CCchhhhHHhHhh---hhhHHHHHHHHHHHHhcCCCCceeEEEEeeccccCCC
Q 005045 386 KSTDNFSKENLIGTGSFGSVYKGTLG-DGTIVAIKVLKLQ---QQGALKSFIDECNALKSTRHRNILRVITACSSVDLEG 461 (717)
Q Consensus 386 ~~~~~y~~~~~ig~g~~g~v~~~~~~-~~~~vavK~~~~~---~~~~~~~~~~e~~~l~~l~h~ni~~~~~~~~~~~~~~ 461 (717)
...++|++.+.||+|+||.||.|.++ +++.||+|++... .....+.+.+|+.+++++.||||+++++++. +
T Consensus 12 ~~~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~~a~K~~~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~-----~ 86 (294)
T 2rku_A 12 RSRRRYVRGRFLGKGGFAKCFEISDADTKEVFAGKIVPKSLLLKPHQREKMSMEISIHRSLAHQHVVGFHGFFE-----D 86 (294)
T ss_dssp TTTEEEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEEGGGCCSHHHHHHHHHHHHHHHTCCCTTBCCEEEEEE-----C
T ss_pred CcccceEEEEEEeecCCEEEEEEEECCCCceEEEEEechhhccCHHHHHHHHHHHHHHHhCCCCCEeeeeeeec-----c
Confidence 35679999999999999999999976 6888999988644 2345677889999999999999999999953 4
Q ss_pred CceEEEEEecCCCCChhhhccCCCCCcccccccCHHHHHHHHHHHHHHHHHHHhcCCCCeeecCCCCCCEEeCCCCceEE
Q 005045 462 NDFKALVFEFMSNGNLDQWLHPSPAEHYQFKKLSVIQRLNIAIDVASALDYLHHHCDTPIAHCDLKPSNVLLDKDMTAHV 541 (717)
Q Consensus 462 ~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~dlkp~NIll~~~~~~kl 541 (717)
.+..++||||+++++|.+++... ..+++..+..++.||+.|++|||+. +++||||||+||+++.++.+||
T Consensus 87 ~~~~~lv~e~~~~~~L~~~~~~~-------~~~~~~~~~~i~~qi~~~l~~lH~~---~i~H~dl~p~Nil~~~~~~~kl 156 (294)
T 2rku_A 87 NDFVFVVLELCRRRSLLELHKRR-------KALTEPEARYYLRQIVLGCQYLHRN---RVIHRDLKLGNLFLNEDLEVKI 156 (294)
T ss_dssp SSEEEEEEECCTTCBHHHHHHHH-------CSCCHHHHHHHHHHHHHHHHHHHHT---TEECCCCCGGGEEECTTCCEEE
T ss_pred CCEEEEEEecCCCCCHHHHHHhc-------CCCCHHHHHHHHHHHHHHHHHHHHC---CccccCCChHhEEEcCCCCEEE
Confidence 55899999999999999988643 5689999999999999999999998 9999999999999999999999
Q ss_pred eeeccchhcccccCCCCCCcceeecccccccccCCCccCCC-CCcccchhhHHHHHHHHHhCCCCCCCCCCCchhhhHHH
Q 005045 542 GDFGLAKFLFEISDNPSKNQTVSIGLKGSIGYIPPEHMNGQ-VSILGDIYSYGILLLEMFTGKRPTGDMFKDDFSIHMFV 620 (717)
Q Consensus 542 ~Dfg~~~~~~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~-~~~~sDvwslG~vl~elltg~~p~~~~~~~~~~~~~~~ 620 (717)
+|||.+...... ........|++.|+|||++.+. ++.++|||||||++|+|++|..||......+. .
T Consensus 157 ~dfg~~~~~~~~-------~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~~l~~l~~g~~p~~~~~~~~~-~---- 224 (294)
T 2rku_A 157 GDFGLATKVEYD-------GERKKVLCGTPNYIAPEVLSKKGHSFEVDVWSIGCIMYTLLVGKPPFETSCLKET-Y---- 224 (294)
T ss_dssp CCCTTCEECCST-------TCCBCCCCSCCSSCCHHHHTTSCBCTHHHHHHHHHHHHHHHHSSCTTCCSSHHHH-H----
T ss_pred EeccCceecccC-------ccccccccCCCCcCCcchhccCCCCchhhHHHHHHHHHHHHhCCCCCCCCCHHHH-H----
Confidence 999999765211 1112335689999999997654 78999999999999999999999965422110 0
Q ss_pred HhcCChhhhhhcCCCCCCCCCCcHHHHHHHHHHHHHHhhhhhhhcchhhhHHHHHHHHHHhhccCCCCcCCCCCHHHHHH
Q 005045 621 SMALPDHVMDILDPSMPLDEENDEEQIEEVIEEKEMMIHIDLEVNTKNKLEECFVSVLRIGLMCSTTSPRERIAMNVVVN 700 (717)
Q Consensus 621 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~cl~~~p~~Rps~~eil~ 700 (717)
..+....... +..++..+.+++.+||+.+|++|||++|+++
T Consensus 225 --------~~~~~~~~~~-------------------------------~~~~~~~~~~li~~~l~~~p~~Rps~~~ll~ 265 (294)
T 2rku_A 225 --------LRIKKNEYSI-------------------------------PKHINPVAASLIQKMLQTDPTARPTINELLN 265 (294)
T ss_dssp --------HHHHTTCCCC-------------------------------CTTSCHHHHHHHHHHTCSSGGGSCCGGGGGG
T ss_pred --------HHHhhccCCC-------------------------------ccccCHHHHHHHHHHcccChhhCcCHHHHhh
Confidence 0000101000 0112456788999999999999999999986
Q ss_pred H
Q 005045 701 N 701 (717)
Q Consensus 701 ~ 701 (717)
.
T Consensus 266 ~ 266 (294)
T 2rku_A 266 D 266 (294)
T ss_dssp S
T ss_pred C
Confidence 4
No 207
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=100.00 E-value=8.9e-37 Score=345.00 Aligned_cols=309 Identities=17% Similarity=0.170 Sum_probs=264.3
Q ss_pred eecEEEcCCCcCcCCCCcCCcCCCCCCEEECCCCcccccCCcCCCCCCCCCEEEccCccccccCCccccCCCCCCEEecc
Q 005045 11 MTQDLNLTYNYLSGKIPTNLSHCTELRSFEASVNDFVGQIPNQLSSLTKLEIIGLGGSNLTGNVPAWIGNFSSLKALSLA 90 (717)
Q Consensus 11 ~~~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~ 90 (717)
.++.|++++|.+....+..|..+++|++|+|++|.+++..|..|+.+++|++|+|++|.|++..|..|+++++|++|+|+
T Consensus 52 ~l~~l~l~~~~l~~lp~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~ 131 (597)
T 3oja_B 52 NQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLE 131 (597)
T ss_dssp CCSEEEESSCEESEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECC
T ss_pred CceEEEeeCCCCCCcCHHHHccCCCCcEEECCCCCCCCCChHHhcCCCCCCEEECCCCcCCCCCHHHHcCCCCCCEEEee
Confidence 67889999999987666678889999999999999998888889999999999999999998888888999999999999
Q ss_pred CCcCcccCChhhhccCCCCeEeccCCCCCCCCCccccCCCCccEEEcccCcccccCCcccccCCCCcceeeccccccccc
Q 005045 91 WNNLRGSIPNELGQLSGLGFFTLYGNFISGIIPSSIYNISSIYYFSVTQNQLHGQLPTDVGLTLPNLKIFAGAVNYFTGS 170 (717)
Q Consensus 91 ~n~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~~l~~~~~~~l~~L~~L~l~~n~l~~~ 170 (717)
+|.|++..+..|.++++|++|+|++|.++++.|..|.++++|++|+|++|.++ .++. ..+++|+.|++++|.+.+
T Consensus 132 ~n~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~-~~~~---~~l~~L~~L~l~~n~l~~- 206 (597)
T 3oja_B 132 RNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLT-HVDL---SLIPSLFHANVSYNLLST- 206 (597)
T ss_dssp SSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECTTSCCS-BCCG---GGCTTCSEEECCSSCCSE-
T ss_pred CCCCCCCCHHHhccCCCCCEEEeeCCcCCCCChhhhhcCCcCcEEECcCCCCC-CcCh---hhhhhhhhhhcccCcccc-
Confidence 99999666667899999999999999999888889999999999999999998 4542 357899999999998874
Q ss_pred CCccCCCCCCCCEEeccCccccccCCCCccCCCCCCeeeccccccCCcccCchhhhhhhccCCCCCEEEeecCcccCcCc
Q 005045 171 IPVSLSNASNLQVLDFAENGLTGTIPGNFGSLKDLVRLNFDQNELGSREIGDLNFLKFLANCTSLEVLGLARNSFGGEMP 250 (717)
Q Consensus 171 ~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~~~p 250 (717)
+...++|+.|++++|.++...+ .+ .++|+.|++++|.++.. ..+..+++|+.|+|++|.+++..|
T Consensus 207 ----l~~~~~L~~L~ls~n~l~~~~~-~~--~~~L~~L~L~~n~l~~~--------~~l~~l~~L~~L~Ls~N~l~~~~~ 271 (597)
T 3oja_B 207 ----LAIPIAVEELDASHNSINVVRG-PV--NVELTILKLQHNNLTDT--------AWLLNYPGLVEVDLSYNELEKIMY 271 (597)
T ss_dssp ----EECCTTCSEEECCSSCCCEEEC-SC--CSCCCEEECCSSCCCCC--------GGGGGCTTCSEEECCSSCCCEEES
T ss_pred ----ccCCchhheeeccCCccccccc-cc--CCCCCEEECCCCCCCCC--------hhhccCCCCCEEECCCCccCCCCH
Confidence 3445689999999999984433 33 36899999999998873 467889999999999999998888
Q ss_pred hhhhhccccccEEecCCCccCCCCCccccCCCCCCEEEccCCcCccccchhhhcCCCCCeEEcccCcCCCCCCccccccc
Q 005045 251 ISIANLSTHLRRLTMGENLMHGNIPVGIGNLVNLNLLGLEGNNLSGSVPEVIGRLNKLEGLGLNVNKFSGLIPSSLGNLT 330 (717)
Q Consensus 251 ~~~~~~~~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~ 330 (717)
..+..+ ++|+.|+|++|.+++ +|..+..+++|+.|+|++|+++ .+|..+..+++|+.|+|++|++++.. +..++
T Consensus 272 ~~~~~l-~~L~~L~Ls~N~l~~-l~~~~~~l~~L~~L~Ls~N~l~-~i~~~~~~l~~L~~L~L~~N~l~~~~---~~~~~ 345 (597)
T 3oja_B 272 HPFVKM-QRLERLYISNNRLVA-LNLYGQPIPTLKVLDLSHNHLL-HVERNQPQFDRLENLYLDHNSIVTLK---LSTHH 345 (597)
T ss_dssp GGGTTC-SSCCEEECTTSCCCE-EECSSSCCTTCCEEECCSSCCC-CCGGGHHHHTTCSEEECCSSCCCCCC---CCTTC
T ss_pred HHhcCc-cCCCEEECCCCCCCC-CCcccccCCCCcEEECCCCCCC-ccCcccccCCCCCEEECCCCCCCCcC---hhhcC
Confidence 888887 589999999999985 5777788999999999999998 67778889999999999999998663 66778
Q ss_pred ccceeeccccccccc
Q 005045 331 ILTRLWMEENRLEGS 345 (717)
Q Consensus 331 ~L~~L~L~~N~l~~~ 345 (717)
+|+.|+|++|++.+.
T Consensus 346 ~L~~L~l~~N~~~~~ 360 (597)
T 3oja_B 346 TLKNLTLSHNDWDCN 360 (597)
T ss_dssp CCSEEECCSSCEEHH
T ss_pred CCCEEEeeCCCCCCh
Confidence 999999999998864
No 208
>2vgo_A Serine/threonine-protein kinase 12-A; nucleotide-binding, serine/threonine-protein kinase, ATP-binding, transferase, coiled coil, cell division, kinase; HET: TPO AD5; 1.7A {Xenopus laevis} PDB: 2bfx_A* 2vgp_A* 3ztx_A* 2vrx_A* 2bfy_A* 4af3_A* 3dj6_A* 3d15_A* 3d2i_A* 3d2k_A* 3d14_A* 3dj5_A* 3dj7_A* 3daj_A* 1ol5_A* 1ol7_A* 2x6d_A* 2x6e_A* 2xng_A* 2dwb_A* ...
Probab=100.00 E-value=8.7e-38 Score=319.72 Aligned_cols=247 Identities=24% Similarity=0.365 Sum_probs=198.7
Q ss_pred cccccccccccCcccccceEEEEeC-CCchhhhHHhHhhh---hhHHHHHHHHHHHHhcCCCCceeEEEEeeccccCCCC
Q 005045 387 STDNFSKENLIGTGSFGSVYKGTLG-DGTIVAIKVLKLQQ---QGALKSFIDECNALKSTRHRNILRVITACSSVDLEGN 462 (717)
Q Consensus 387 ~~~~y~~~~~ig~g~~g~v~~~~~~-~~~~vavK~~~~~~---~~~~~~~~~e~~~l~~l~h~ni~~~~~~~~~~~~~~~ 462 (717)
..++|++.+.||+|++|.||.|.+. +++.||+|++.... ......+.+|++++++++||||+++++++. +.
T Consensus 12 ~~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~-----~~ 86 (284)
T 2vgo_A 12 TIDDFDIGRPLGKGKFGNVYLAREKQNKFIMALKVLFKSQLEKEGVEHQLRREIEIQSHLRHPNILRMYNYFH-----DR 86 (284)
T ss_dssp CGGGEEEEEEEEECSSEEEEEEEETTTTEEEEEEEEEHHHHHHTTCHHHHHHHHHHHHTCCCTTBCCEEEEEE-----CS
T ss_pred hhhhceeeheecCCCCeEEEEEEEcCCCcEEEEEEEcccccchHHHHHHHHHHHHHHhcCCCCCEeeEEEEEE-----cC
Confidence 4578999999999999999999965 78889999886432 233567889999999999999999999953 45
Q ss_pred ceEEEEEecCCCCChhhhccCCCCCcccccccCHHHHHHHHHHHHHHHHHHHhcCCCCeeecCCCCCCEEeCCCCceEEe
Q 005045 463 DFKALVFEFMSNGNLDQWLHPSPAEHYQFKKLSVIQRLNIAIDVASALDYLHHHCDTPIAHCDLKPSNVLLDKDMTAHVG 542 (717)
Q Consensus 463 ~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~dlkp~NIll~~~~~~kl~ 542 (717)
+..++||||+++++|.+++... ..+++..+..++.||+.|++|||+. +++||||||+||+++.++.+||+
T Consensus 87 ~~~~lv~e~~~~~~L~~~l~~~-------~~~~~~~~~~~~~qi~~~l~~lH~~---~i~H~dl~p~Nil~~~~~~~kl~ 156 (284)
T 2vgo_A 87 KRIYLMLEFAPRGELYKELQKH-------GRFDEQRSATFMEELADALHYCHER---KVIHRDIKPENLLMGYKGELKIA 156 (284)
T ss_dssp SEEEEEECCCTTEEHHHHHHHH-------SSCCHHHHHHHHHHHHHHHHHHHTT---TEECCCCSGGGEEECTTCCEEEC
T ss_pred CEEEEEEEeCCCCcHHHHHHhc-------CCCCHHHHHHHHHHHHHHHHHHHHC---CceecCCCHHHEEEcCCCCEEEe
Confidence 6899999999999999998744 4689999999999999999999997 99999999999999999999999
Q ss_pred eeccchhcccccCCCCCCcceeecccccccccCCCccCC-CCCcccchhhHHHHHHHHHhCCCCCCCCCCCchhhhHHHH
Q 005045 543 DFGLAKFLFEISDNPSKNQTVSIGLKGSIGYIPPEHMNG-QVSILGDIYSYGILLLEMFTGKRPTGDMFKDDFSIHMFVS 621 (717)
Q Consensus 543 Dfg~~~~~~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~-~~~~~sDvwslG~vl~elltg~~p~~~~~~~~~~~~~~~~ 621 (717)
|||.+..... .......|++.|+|||++.+ .++.++|||||||++|+|++|..||....... ..
T Consensus 157 Dfg~~~~~~~---------~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~g~~pf~~~~~~~--~~---- 221 (284)
T 2vgo_A 157 DFGWSVHAPS---------LRRRTMCGTLDYLPPEMIEGKTHDEKVDLWCAGVLCYEFLVGMPPFDSPSHTE--TH---- 221 (284)
T ss_dssp CCTTCEECSS---------SCBCCCCSCGGGCCHHHHTTCCBCTTHHHHHHHHHHHHHHHSSCTTCCSSHHH--HH----
T ss_pred cccccccCcc---------cccccccCCCCcCCHHHhccCCCCcccchhhHHHHHHHHHHCCCCCCCCCHhH--HH----
Confidence 9999865411 11233568999999999765 48999999999999999999999996542111 00
Q ss_pred hcCChhhhhhcCCCCCCCCCCcHHHHHHHHHHHHHHhhhhhhhcchhhhHHHHHHHHHHhhccCCCCcCCCCCHHHHHHH
Q 005045 622 MALPDHVMDILDPSMPLDEENDEEQIEEVIEEKEMMIHIDLEVNTKNKLEECFVSVLRIGLMCSTTSPRERIAMNVVVNN 701 (717)
Q Consensus 622 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~cl~~~p~~Rps~~eil~~ 701 (717)
..+........ ...+..+.+++.+||+.+|++|||++|+++.
T Consensus 222 -------~~~~~~~~~~~-------------------------------~~~~~~~~~li~~~l~~~p~~Rps~~~ll~h 263 (284)
T 2vgo_A 222 -------RRIVNVDLKFP-------------------------------PFLSDGSKDLISKLLRYHPPQRLPLKGVMEH 263 (284)
T ss_dssp -------HHHHTTCCCCC-------------------------------TTSCHHHHHHHHHHSCSSGGGSCCHHHHHTC
T ss_pred -------HHHhccccCCC-------------------------------CcCCHHHHHHHHHHhhcCHhhCCCHHHHhhC
Confidence 01111111100 1124567889999999999999999999863
No 209
>3q5i_A Protein kinase; CDPK, malaria, phosphotransferase, structural genomics, structural genomic consortium, SGC, transferase; HET: ANP; 2.10A {Plasmodium berghei}
Probab=100.00 E-value=1.1e-37 Score=344.94 Aligned_cols=254 Identities=26% Similarity=0.357 Sum_probs=199.7
Q ss_pred cccccccccccccCcccccceEEEEeC-CCchhhhHHhHhhhh-------------hHHHHHHHHHHHHhcCCCCceeEE
Q 005045 385 SKSTDNFSKENLIGTGSFGSVYKGTLG-DGTIVAIKVLKLQQQ-------------GALKSFIDECNALKSTRHRNILRV 450 (717)
Q Consensus 385 ~~~~~~y~~~~~ig~g~~g~v~~~~~~-~~~~vavK~~~~~~~-------------~~~~~~~~e~~~l~~l~h~ni~~~ 450 (717)
....++|++.++||+|+||.||+|.++ +++.||+|++..... ...+.+.+|++++++++||||+++
T Consensus 32 ~~i~~~Y~~~~~lG~G~~g~V~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~hpniv~~ 111 (504)
T 3q5i_A 32 GKIGESYFKVRKLGSGAYGEVLLCKEKNGHSEKAIKVIKKSQFDKGRYSDDNKNIEKFHEEIYNEISLLKSLDHPNIIKL 111 (504)
T ss_dssp SCGGGTEEEEEEEEC--CEEEEEEEETTTCCEEEEEEEEC----------------CTHHHHHHHHHHHHTCCCTTBCCE
T ss_pred CCcccceEEEeEecccCCeEEEEEEECCCCcEEEEEEEEhhhcccccccccchhhHHHHHHHHHHHHHHHhCCCCCCCeE
Confidence 345789999999999999999999965 788999999864321 235678899999999999999999
Q ss_pred EEeeccccCCCCceEEEEEecCCCCChhhhccCCCCCcccccccCHHHHHHHHHHHHHHHHHHHhcCCCCeeecCCCCCC
Q 005045 451 ITACSSVDLEGNDFKALVFEFMSNGNLDQWLHPSPAEHYQFKKLSVIQRLNIAIDVASALDYLHHHCDTPIAHCDLKPSN 530 (717)
Q Consensus 451 ~~~~~~~~~~~~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~dlkp~N 530 (717)
++++ .+....++||||+++++|.+++... ..+++..+..++.||+.||+|||+. +|+||||||+|
T Consensus 112 ~~~~-----~~~~~~~lv~e~~~gg~L~~~l~~~-------~~~~~~~~~~i~~qi~~~l~~lH~~---~ivH~Dlkp~N 176 (504)
T 3q5i_A 112 FDVF-----EDKKYFYLVTEFYEGGELFEQIINR-------HKFDECDAANIMKQILSGICYLHKH---NIVHRDIKPEN 176 (504)
T ss_dssp EEEE-----ECSSEEEEEEECCTTCBHHHHHHHH-------SCCCHHHHHHHHHHHHHHHHHHHHT---TEECSCCSGGG
T ss_pred EEEE-----EcCCEEEEEEecCCCCcHHHHHHHc-------CCCCHHHHHHHHHHHHHHHHHHHHC---CeEeCCCcHHH
Confidence 9995 4456899999999999999988643 5689999999999999999999998 99999999999
Q ss_pred EEeCCCC---ceEEeeeccchhcccccCCCCCCcceeecccccccccCCCccCCCCCcccchhhHHHHHHHHHhCCCCCC
Q 005045 531 VLLDKDM---TAHVGDFGLAKFLFEISDNPSKNQTVSIGLKGSIGYIPPEHMNGQVSILGDIYSYGILLLEMFTGKRPTG 607 (717)
Q Consensus 531 Ill~~~~---~~kl~Dfg~~~~~~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~sDvwslG~vl~elltg~~p~~ 607 (717)
|+++.++ .+||+|||++..... ........||+.|+|||++.+.++.++||||+||++|+|++|..||.
T Consensus 177 il~~~~~~~~~~kl~Dfg~a~~~~~--------~~~~~~~~gt~~y~aPE~~~~~~~~~~DiwslG~il~~ll~g~~pf~ 248 (504)
T 3q5i_A 177 ILLENKNSLLNIKIVDFGLSSFFSK--------DYKLRDRLGTAYYIAPEVLKKKYNEKCDVWSCGVIMYILLCGYPPFG 248 (504)
T ss_dssp EEESSTTCCSSEEECCCTTCEECCT--------TSCBCCCCSCTTTCCHHHHTTCBCTHHHHHHHHHHHHHHHHSSCSSC
T ss_pred EEEecCCCCccEEEEECCCCEEcCC--------CCccccccCCcCCCCHHHhccCCCchHHHHHHHHHHHHHHhCCCCCC
Confidence 9998776 699999999986521 11223456899999999998889999999999999999999999997
Q ss_pred CCCCCchhhhHHHHhcCChhhhhhcCCCCCCCCCCcHHHHHHHHHHHHHHhhhhhhhcchhhhHHHHHHHHHHhhccCCC
Q 005045 608 DMFKDDFSIHMFVSMALPDHVMDILDPSMPLDEENDEEQIEEVIEEKEMMIHIDLEVNTKNKLEECFVSVLRIGLMCSTT 687 (717)
Q Consensus 608 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~cl~~ 687 (717)
...... ....+. ....... .+....++..+.+++.+||+.
T Consensus 249 ~~~~~~--~~~~i~-----------~~~~~~~---------------------------~~~~~~~s~~~~~li~~~L~~ 288 (504)
T 3q5i_A 249 GQNDQD--IIKKVE-----------KGKYYFD---------------------------FNDWKNISDEAKELIKLMLTY 288 (504)
T ss_dssp CSSHHH--HHHHHH-----------HCCCCCC---------------------------HHHHTTSCHHHHHHHHHHTCS
T ss_pred CCCHHH--HHHHHH-----------cCCCCCC---------------------------ccccCCCCHHHHHHHHHHcCC
Confidence 642211 111110 0000000 001112255688999999999
Q ss_pred CcCCCCCHHHHHHH
Q 005045 688 SPRERIAMNVVVNN 701 (717)
Q Consensus 688 ~p~~Rps~~eil~~ 701 (717)
+|.+|||++|+++.
T Consensus 289 dp~~R~t~~e~l~h 302 (504)
T 3q5i_A 289 DYNKRCTAEEALNS 302 (504)
T ss_dssp STTTSCCHHHHHTS
T ss_pred ChhHCCCHHHHhcC
Confidence 99999999999853
No 210
>1fvr_A Tyrosine-protein kinase TIE-2; tyrosine kinase, transferase; 2.20A {Homo sapiens} SCOP: d.144.1.7 PDB: 2oo8_X* 2osc_A* 2p4i_A* 3l8p_A* 2wqb_A*
Probab=100.00 E-value=3.3e-38 Score=329.75 Aligned_cols=264 Identities=26% Similarity=0.369 Sum_probs=201.5
Q ss_pred ccccccccccCcccccceEEEEeC-CCchh--hhHHhHhh-hhhHHHHHHHHHHHHhcC-CCCceeEEEEeeccccCCCC
Q 005045 388 TDNFSKENLIGTGSFGSVYKGTLG-DGTIV--AIKVLKLQ-QQGALKSFIDECNALKST-RHRNILRVITACSSVDLEGN 462 (717)
Q Consensus 388 ~~~y~~~~~ig~g~~g~v~~~~~~-~~~~v--avK~~~~~-~~~~~~~~~~e~~~l~~l-~h~ni~~~~~~~~~~~~~~~ 462 (717)
.++|++.+.||+|+||.||+|++. +++.+ |+|.+... .....+.+.+|+++++++ +||||+++++++. +.
T Consensus 24 ~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~~~v~iK~~~~~~~~~~~~~~~~E~~~l~~l~~hp~iv~~~~~~~-----~~ 98 (327)
T 1fvr_A 24 WNDIKFQDVIGEGNFGQVLKARIKKDGLRMDAAIKRMKEYASKDDHRDFAGELEVLCKLGHHPNIINLLGACE-----HR 98 (327)
T ss_dssp GGGCEEEEEEECGGGCEEEEEEEEETTEEEEEEEEEEECC------CHHHHHHHHHTTCCCCTTBCCEEEEEE-----ET
T ss_pred HHHccceeeeecCCCceEEEEEEccCCcccceeeeeeccccchHHHHHHHHHHHHHHhccCCCchhhhceeee-----eC
Confidence 578999999999999999999965 56654 88887643 233456788999999999 9999999999954 44
Q ss_pred ceEEEEEecCCCCChhhhccCCCCCc---------ccccccCHHHHHHHHHHHHHHHHHHHhcCCCCeeecCCCCCCEEe
Q 005045 463 DFKALVFEFMSNGNLDQWLHPSPAEH---------YQFKKLSVIQRLNIAIDVASALDYLHHHCDTPIAHCDLKPSNVLL 533 (717)
Q Consensus 463 ~~~~lv~e~~~~~~L~~~l~~~~~~~---------~~~~~~~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~dlkp~NIll 533 (717)
+..++||||+++++|.+++....... .....+++..++.++.||+.||+|||+. +|+||||||+||++
T Consensus 99 ~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~qi~~aL~~LH~~---~ivH~dlkp~NIl~ 175 (327)
T 1fvr_A 99 GYLYLAIEYAPHGNLLDFLRKSRVLETDPAFAIANSTASTLSSQQLLHFAADVARGMDYLSQK---QFIHRDLAARNILV 175 (327)
T ss_dssp TEEEEEECCCTTCBHHHHHHTTCHHHHCHHHHHHTTBSCSSCHHHHHHHHHHHHHHHHHHHHT---TEECSCCSGGGEEE
T ss_pred CceEEEEecCCCCCHHHHHHhcccccccccccccccccccCCHHHHHHHHHHHHHHHHHHHhC---CccCCCCccceEEE
Confidence 58999999999999999997642000 0114689999999999999999999998 99999999999999
Q ss_pred CCCCceEEeeeccchhcccccCCCCCCcceeecccccccccCCCccCC-CCCcccchhhHHHHHHHHHh-CCCCCCCCCC
Q 005045 534 DKDMTAHVGDFGLAKFLFEISDNPSKNQTVSIGLKGSIGYIPPEHMNG-QVSILGDIYSYGILLLEMFT-GKRPTGDMFK 611 (717)
Q Consensus 534 ~~~~~~kl~Dfg~~~~~~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~-~~~~~sDvwslG~vl~ellt-g~~p~~~~~~ 611 (717)
+.++.+||+|||.+...... .......+++.|+|||++.+ .++.++|||||||++|+|++ |..||.....
T Consensus 176 ~~~~~~kL~Dfg~~~~~~~~--------~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~ellt~g~~pf~~~~~ 247 (327)
T 1fvr_A 176 GENYVAKIADFGLSRGQEVY--------VKKTMGRLPVRWMAIESLNYSVYTTNSDVWSYGVLLWEIVSLGGTPYCGMTC 247 (327)
T ss_dssp CGGGCEEECCTTCEESSCEE--------CCC----CCTTTCCHHHHHHCEECHHHHHHHHHHHHHHHHTTSCCTTTTCCH
T ss_pred cCCCeEEEcccCcCcccccc--------ccccCCCCCccccChhhhccccCCchhcchHHHHHHHHHHcCCCCCCCCCcH
Confidence 99999999999998743111 11122346788999999755 47999999999999999998 9999965422
Q ss_pred CchhhhHHHHhcCChhhhhhcCCCCCCCCCCcHHHHHHHHHHHHHHhhhhhhhcchhhhHHHHHHHHHHhhccCCCCcCC
Q 005045 612 DDFSIHMFVSMALPDHVMDILDPSMPLDEENDEEQIEEVIEEKEMMIHIDLEVNTKNKLEECFVSVLRIGLMCSTTSPRE 691 (717)
Q Consensus 612 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~cl~~~p~~ 691 (717)
.. .... +........ +..++..+.+++.+||+.+|++
T Consensus 248 ~~--~~~~--------~~~~~~~~~---------------------------------~~~~~~~l~~li~~~l~~dp~~ 284 (327)
T 1fvr_A 248 AE--LYEK--------LPQGYRLEK---------------------------------PLNCDDEVYDLMRQCWREKPYE 284 (327)
T ss_dssp HH--HHHH--------GGGTCCCCC---------------------------------CTTBCHHHHHHHHHHTCSSGGG
T ss_pred HH--HHHH--------hhcCCCCCC---------------------------------CCCCCHHHHHHHHHHccCChhh
Confidence 11 1110 000000010 1122556889999999999999
Q ss_pred CCCHHHHHHHHHHHHHHHH
Q 005045 692 RIAMNVVVNNLKTIRNCFL 710 (717)
Q Consensus 692 Rps~~eil~~l~~i~~~~~ 710 (717)
|||+.|+++.|+++.++..
T Consensus 285 Rps~~ell~~L~~~~~~~~ 303 (327)
T 1fvr_A 285 RPSFAQILVSLNRMLEERK 303 (327)
T ss_dssp SCCHHHHHHHHHHHHHSSS
T ss_pred CcCHHHHHHHHHHHHHhhc
Confidence 9999999999999987543
No 211
>3mtl_A Cell division protein kinase 16; pctaire1, indirubin, structural genomics, structural consortium, SGC, transferase; HET: FEF; 2.40A {Homo sapiens}
Probab=100.00 E-value=1.4e-38 Score=331.92 Aligned_cols=274 Identities=22% Similarity=0.293 Sum_probs=192.1
Q ss_pred cccccccccCcccccceEEEEeC-CCchhhhHHhHhhhh-hHHHHHHHHHHHHhcCCCCceeEEEEeeccccCCCCceEE
Q 005045 389 DNFSKENLIGTGSFGSVYKGTLG-DGTIVAIKVLKLQQQ-GALKSFIDECNALKSTRHRNILRVITACSSVDLEGNDFKA 466 (717)
Q Consensus 389 ~~y~~~~~ig~g~~g~v~~~~~~-~~~~vavK~~~~~~~-~~~~~~~~e~~~l~~l~h~ni~~~~~~~~~~~~~~~~~~~ 466 (717)
++|++.++||+|+||.||+|++. +++.||+|++..... .....+.+|++++++++||||+++++++. ..+..+
T Consensus 2 ~~y~~~~~lG~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~-----~~~~~~ 76 (324)
T 3mtl_A 2 ETYIKLDKLGEGTYATVYKGKSKLTDNLVALKEIRLEHEEGAPCTAIREVSLLKDLKHANIVTLHDIIH-----TEKSLT 76 (324)
T ss_dssp CSEEEEEEEEECSSEEEEEEEETTTCCEEEEEEECC------CCCCCCCHHHHSCCCCTTBCCEEEEEE-----CSSCEE
T ss_pred CceEEEEEEcCCCCEEEEEEEECCCCcEEEEEEEecccccccchhHHHHHHHHHhcCCCCCCeeeeEEe-----eCCEEE
Confidence 58999999999999999999975 789999998864432 22234557999999999999999999953 455899
Q ss_pred EEEecCCCCChhhhccCCCCCcccccccCHHHHHHHHHHHHHHHHHHHhcCCCCeeecCCCCCCEEeCCCCceEEeeecc
Q 005045 467 LVFEFMSNGNLDQWLHPSPAEHYQFKKLSVIQRLNIAIDVASALDYLHHHCDTPIAHCDLKPSNVLLDKDMTAHVGDFGL 546 (717)
Q Consensus 467 lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~dlkp~NIll~~~~~~kl~Dfg~ 546 (717)
+||||++ ++|.+++.... ..+++..+..++.||+.||+|||+. ||+||||||+||+++.++.+||+|||.
T Consensus 77 lv~e~~~-~~l~~~~~~~~------~~~~~~~~~~~~~qi~~aL~~LH~~---~ivH~Dikp~NIl~~~~~~~kl~Dfg~ 146 (324)
T 3mtl_A 77 LVFEYLD-KDLKQYLDDCG------NIINMHNVKLFLFQLLRGLAYCHRQ---KVLHRDLKPQNLLINERGELKLADFGL 146 (324)
T ss_dssp EEEECCS-EEHHHHHHHTT------TCCCHHHHHHHHHHHHHHHHHHHHT---TEEESSCCGGGEEECTTCCEEECSSSE
T ss_pred EEecccc-cCHHHHHHhcC------CCCCHHHHHHHHHHHHHHHHHHHHC---CccCCCcCHHHEEECCCCCEEEccCcc
Confidence 9999996 58988887542 4689999999999999999999998 999999999999999999999999999
Q ss_pred chhcccccCCCCCCcceeecccccccccCCCccCC--CCCcccchhhHHHHHHHHHhCCCCCCCCCCCchhhhHHH--Hh
Q 005045 547 AKFLFEISDNPSKNQTVSIGLKGSIGYIPPEHMNG--QVSILGDIYSYGILLLEMFTGKRPTGDMFKDDFSIHMFV--SM 622 (717)
Q Consensus 547 ~~~~~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~--~~~~~sDvwslG~vl~elltg~~p~~~~~~~~~~~~~~~--~~ 622 (717)
+..... .........+|+.|+|||++.+ .++.++|||||||++|+|++|..||......+....... ..
T Consensus 147 a~~~~~-------~~~~~~~~~~t~~y~aPE~~~~~~~~~~~~DiwslG~il~~l~~g~~pf~~~~~~~~~~~i~~~~~~ 219 (324)
T 3mtl_A 147 ARAKSI-------PTKTYDNEVVTLWYRPPDILLGSTDYSTQIDMWGVGCIFYEMATGRPLFPGSTVEEQLHFIFRILGT 219 (324)
T ss_dssp EECC-------------------CGGGCCHHHHTTCCCCCTHHHHHHHHHHHHHHHHSSCSCCCSSHHHHHHHHHHHHCC
T ss_pred cccccC-------CccccccccCcccccChhhhcCCCCCCcHHHHHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHHHhCC
Confidence 875421 1112233467999999999654 479999999999999999999999976533221111000 00
Q ss_pred cCChhhhhhcCCCCCCCCCCcHHHHHHHHHHHHHHhhhhhhhcchhhhHHHHHHHHHHhhccCCCCcCCCCCHHHHHH
Q 005045 623 ALPDHVMDILDPSMPLDEENDEEQIEEVIEEKEMMIHIDLEVNTKNKLEECFVSVLRIGLMCSTTSPRERIAMNVVVN 700 (717)
Q Consensus 623 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~cl~~~p~~Rps~~eil~ 700 (717)
..+..+...... .++... ..............+.++..+.+++.+||++||++|||++|+++
T Consensus 220 ~~~~~~~~~~~~-------------~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~R~t~~e~l~ 281 (324)
T 3mtl_A 220 PTEETWPGILSN-------------EEFKTY---NYPKYRAEALLSHAPRLDSDGADLLTKLLQFEGRNRISAEDAMK 281 (324)
T ss_dssp CCTTTSTTGGGC-------------HHHHHT---CCCCCCCCCHHHHCTTSCHHHHHHHHHHSCSSGGGSCCHHHHTT
T ss_pred CChHhchhhhcc-------------hhhccc---ccccccchhhhhhcCCCCHHHHHHHHHHcCcCcccCCCHHHHhc
Confidence 001111111100 000000 00000000000111233556789999999999999999999986
No 212
>3e7e_A HBUB1, BUB1A, mitotic checkpoint serine/threonine-protein kinas; spindle assembly checkpoint, mitosis, kinase, activation, KE CDC20, ATP-binding; HET: ATP; 2.31A {Homo sapiens}
Probab=100.00 E-value=5.1e-38 Score=333.46 Aligned_cols=264 Identities=14% Similarity=0.119 Sum_probs=204.4
Q ss_pred cccccccccccccccccCcccccceEEEE------eCCCchhhhHHhHhhhhhHHHHHHHHHHHHhcCC---CCceeEEE
Q 005045 381 YSDISKSTDNFSKENLIGTGSFGSVYKGT------LGDGTIVAIKVLKLQQQGALKSFIDECNALKSTR---HRNILRVI 451 (717)
Q Consensus 381 ~~~~~~~~~~y~~~~~ig~g~~g~v~~~~------~~~~~~vavK~~~~~~~~~~~~~~~e~~~l~~l~---h~ni~~~~ 451 (717)
..++....++|++.+.||+|+||.||+|. ..+++.||+|++.... ...+..|+++++.+. |+||++++
T Consensus 57 ~~~~~~~~~~y~~~~~lG~G~~g~Vy~~~~~~~~~~~~~~~vavK~~~~~~---~~~~~~e~~~~~~l~~~~~~~iv~~~ 133 (365)
T 3e7e_A 57 KTEFQLGSKLVYVHHLLGEGAFAQVYEATQGDLNDAKNKQKFVLKVQKPAN---PWEFYIGTQLMERLKPSMQHMFMKFY 133 (365)
T ss_dssp SCEEECSSSEEEEEEEEEECSSEEEEEEEC-------CCCCEEEEEESSCC---HHHHHHHHHHHHHSCGGGGGGBCCEE
T ss_pred ceeEEECCEEEEEEEEeeccCCEEEEEEEecCCcccccCcEEEEEEeCCCC---hhHHHHHHHHHHHhhhhhhhhhhhhh
Confidence 34555667899999999999999999994 3478899999987543 345667777777776 99999999
Q ss_pred EeeccccCCCCceEEEEEecCCCCChhhhccCCCCCcccccccCHHHHHHHHHHHHHHHHHHHhcCCCCeeecCCCCCCE
Q 005045 452 TACSSVDLEGNDFKALVFEFMSNGNLDQWLHPSPAEHYQFKKLSVIQRLNIAIDVASALDYLHHHCDTPIAHCDLKPSNV 531 (717)
Q Consensus 452 ~~~~~~~~~~~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~dlkp~NI 531 (717)
+++. ..+..++||||+++|+|.+++...... ....+++..++.++.||+.||+|||+. +|+||||||+||
T Consensus 134 ~~~~-----~~~~~~lv~e~~~~g~L~~~l~~~~~~--~~~~l~~~~~~~i~~qi~~~L~~lH~~---~ivHrDiKp~NI 203 (365)
T 3e7e_A 134 SAHL-----FQNGSVLVGELYSYGTLLNAINLYKNT--PEKVMPQGLVISFAMRMLYMIEQVHDC---EIIHGDIKPDNF 203 (365)
T ss_dssp EEEE-----CSSCEEEEECCCCSCBHHHHHHHHHTS--TTCSCCHHHHHHHHHHHHHHHHHHHTT---TEECCCCSGGGE
T ss_pred eeee-----cCCCcEEEEeccCCCcHHHHHHHhhcc--cccCCCHHHHHHHHHHHHHHHHHHhhC---CeecCCCCHHHE
Confidence 9954 345889999999999999998632100 115699999999999999999999997 999999999999
Q ss_pred EeCC-----------CCceEEeeeccchhcccccCCCCCCcceeecccccccccCCCccCCC-CCcccchhhHHHHHHHH
Q 005045 532 LLDK-----------DMTAHVGDFGLAKFLFEISDNPSKNQTVSIGLKGSIGYIPPEHMNGQ-VSILGDIYSYGILLLEM 599 (717)
Q Consensus 532 ll~~-----------~~~~kl~Dfg~~~~~~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~-~~~~sDvwslG~vl~el 599 (717)
+++. ++.+||+|||+++.+... ..........||+.|+|||++.+. ++.++|||||||++|||
T Consensus 204 ll~~~~~~~~~~~~~~~~~kl~DFG~a~~~~~~-----~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~el 278 (365)
T 3e7e_A 204 ILGNGFLEQDDEDDLSAGLALIDLGQSIDMKLF-----PKGTIFTAKCETSGFQCVEMLSNKPWNYQIDYFGVAATVYCM 278 (365)
T ss_dssp EECGGGTCC------CTTEEECCCTTCEEGGGS-----CTTEEECCSSCTTSCCCHHHHTTCCBSTHHHHHHHHHHHHHH
T ss_pred EecccccCccccccccCCEEEeeCchhhhhhcc-----CCCceeeeecCCCCCCChHHhcCCCCCccccHHHHHHHHHHH
Confidence 9998 899999999999754211 122233456799999999997664 89999999999999999
Q ss_pred HhCCCCCCCCCCCchhhhHHHHhcCChhhhhhcCCCCCCCCCCcHHHHHHHHHHHHHHhhhhhhhcchhhhHHHHHHHHH
Q 005045 600 FTGKRPTGDMFKDDFSIHMFVSMALPDHVMDILDPSMPLDEENDEEQIEEVIEEKEMMIHIDLEVNTKNKLEECFVSVLR 679 (717)
Q Consensus 600 ltg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 679 (717)
++|+.||......... +.......+ ....+.+
T Consensus 279 ltg~~pf~~~~~~~~~----------------~~~~~~~~~--------------------------------~~~~~~~ 310 (365)
T 3e7e_A 279 LFGTYMKVKNEGGECK----------------PEGLFRRLP--------------------------------HLDMWNE 310 (365)
T ss_dssp HHSSCCCEEEETTEEE----------------ECSCCTTCS--------------------------------SHHHHHH
T ss_pred HhCCCccccCCCCcee----------------echhccccC--------------------------------cHHHHHH
Confidence 9999998543221110 111111110 0445678
Q ss_pred HhhccCCCCcCCC-CCHHHHHHHHHHHHHHHH
Q 005045 680 IGLMCSTTSPRER-IAMNVVVNNLKTIRNCFL 710 (717)
Q Consensus 680 li~~cl~~~p~~R-ps~~eil~~l~~i~~~~~ 710 (717)
++.+|++.+|.+| |+++++.+.++.+..+..
T Consensus 311 ~~~~~l~~~p~~r~~~~~~l~~~l~~~l~~~~ 342 (365)
T 3e7e_A 311 FFHVMLNIPDCHHLPSLDLLRQKLKKVFQQHY 342 (365)
T ss_dssp HHHHHHCCCCTTCCCCHHHHHHHHHHHHHHHT
T ss_pred HHHHHcCCCCCCcchHHHHHHHHHHHHHHHhh
Confidence 9999999999999 689999999988876643
No 213
>4aaa_A Cyclin-dependent kinase-like 2; transferase, phospho-mimetic; HET: DKI; 1.53A {Homo sapiens} PDB: 4bbm_A*
Probab=100.00 E-value=5.1e-38 Score=328.81 Aligned_cols=273 Identities=24% Similarity=0.333 Sum_probs=199.8
Q ss_pred ccccccccccccCcccccceEEEEeC-CCchhhhHHhHhhh--hhHHHHHHHHHHHHhcCCCCceeEEEEeeccccCCCC
Q 005045 386 KSTDNFSKENLIGTGSFGSVYKGTLG-DGTIVAIKVLKLQQ--QGALKSFIDECNALKSTRHRNILRVITACSSVDLEGN 462 (717)
Q Consensus 386 ~~~~~y~~~~~ig~g~~g~v~~~~~~-~~~~vavK~~~~~~--~~~~~~~~~e~~~l~~l~h~ni~~~~~~~~~~~~~~~ 462 (717)
...++|++.+.||+|+||.||+|++. +|+.||+|++.... ....+.+.+|++++++++||||+++++++. ..
T Consensus 22 ~~~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~-----~~ 96 (331)
T 4aaa_A 22 QSMEKYENLGLVGEGSYGMVMKCRNKDTGRIVAIKKFLESDDDKMVKKIAMREIKLLKQLRHENLVNLLEVCK-----KK 96 (331)
T ss_dssp BCGGGEEEEEEGGGGTTSSEEEEEETTTCCEEEEEEEESCSSCHHHHHHHHHHHHHHHHCCCTTBCCEEEEEE-----ET
T ss_pred hhhhhheeeeEEeecCCEEEEEEEECCCCceEEEEEEecCCCchHHHHHHHHHHHHHhhCCCCCEeeEEEEee-----cC
Confidence 45679999999999999999999965 68999999875432 334566889999999999999999999954 44
Q ss_pred ceEEEEEecCCCCChhhhccCCCCCcccccccCHHHHHHHHHHHHHHHHHHHhcCCCCeeecCCCCCCEEeCCCCceEEe
Q 005045 463 DFKALVFEFMSNGNLDQWLHPSPAEHYQFKKLSVIQRLNIAIDVASALDYLHHHCDTPIAHCDLKPSNVLLDKDMTAHVG 542 (717)
Q Consensus 463 ~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~dlkp~NIll~~~~~~kl~ 542 (717)
+..++||||++++++.++.... ..+++..+..++.||+.||+|||+. +|+||||||+||+++.++.+||+
T Consensus 97 ~~~~lv~e~~~~~~l~~~~~~~-------~~~~~~~~~~~~~qi~~~l~~LH~~---~ivH~dlkp~Nil~~~~~~~kl~ 166 (331)
T 4aaa_A 97 KRWYLVFEFVDHTILDDLELFP-------NGLDYQVVQKYLFQIINGIGFCHSH---NIIHRDIKPENILVSQSGVVKLC 166 (331)
T ss_dssp TEEEEEEECCSEEHHHHHHHST-------TCCCHHHHHHHHHHHHHHHHHHHHT---TCCCCCCCGGGEEECTTSCEEEC
T ss_pred CEEEEEEecCCcchHHHHHhhc-------cCCCHHHHHHHHHHHHHHHHHHHHC---CEEccCcChheEEEcCCCcEEEE
Confidence 5899999999999898886644 5689999999999999999999998 99999999999999999999999
Q ss_pred eeccchhcccccCCCCCCcceeecccccccccCCCccCC--CCCcccchhhHHHHHHHHHhCCCCCCCCCCCchhhhHHH
Q 005045 543 DFGLAKFLFEISDNPSKNQTVSIGLKGSIGYIPPEHMNG--QVSILGDIYSYGILLLEMFTGKRPTGDMFKDDFSIHMFV 620 (717)
Q Consensus 543 Dfg~~~~~~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~--~~~~~sDvwslG~vl~elltg~~p~~~~~~~~~~~~~~~ 620 (717)
|||.+...... ........++..|+|||++.+ .++.++|||||||++|+|++|..||......+.......
T Consensus 167 Dfg~~~~~~~~-------~~~~~~~~~t~~y~aPE~~~~~~~~~~~~Di~slG~il~~l~~g~~pf~~~~~~~~~~~~~~ 239 (331)
T 4aaa_A 167 DFGFARTLAAP-------GEVYDDEVATRWYRAPELLVGDVKYGKAVDVWAIGCLVTEMFMGEPLFPGDSDIDQLYHIMM 239 (331)
T ss_dssp CCTTC-------------------CCCCCTTCCHHHHTTCTTCCTHHHHHHHHHHHHHHHHSSCSCCCSSHHHHHHHHHH
T ss_pred eCCCceeecCC-------ccccCCCcCCccccCcccccCCCCcchHHHHHHHHHHHHHHHhCCCCCCCCCcHHHHHHHHH
Confidence 99999765221 112233568999999999765 478999999999999999999999976533221111110
Q ss_pred H-hcCChhhhhhc-------CCCCCCCCCCcHHHHHHHHHHHHHHhhhhhhhcchhhhHHHHHHHHHHhhccCCCCcCCC
Q 005045 621 S-MALPDHVMDIL-------DPSMPLDEENDEEQIEEVIEEKEMMIHIDLEVNTKNKLEECFVSVLRIGLMCSTTSPRER 692 (717)
Q Consensus 621 ~-~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~cl~~~p~~R 692 (717)
. ..........+ ....+..... .......+.++..+.+++.+||+.+|++|
T Consensus 240 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------------~~~~~~~~~~~~~l~~li~~~L~~dP~~R 298 (331)
T 4aaa_A 240 CLGNLIPRHQELFNKNPVFAGVRLPEIKER---------------------EPLERRYPKLSEVVIDLAKKCLHIDPDKR 298 (331)
T ss_dssp HHCSCCHHHHHHHHHCGGGTTCCCCCCSSC---------------------CCHHHHSTTSCHHHHHHHHHHTCSSGGGS
T ss_pred HhCCCChhhhhHhhhccccccccCcccccc---------------------chhhhcccchhHHHHHHHHHHhccCcccC
Confidence 0 01111100000 0000000000 00001112346678999999999999999
Q ss_pred CCHHHHHHH
Q 005045 693 IAMNVVVNN 701 (717)
Q Consensus 693 ps~~eil~~ 701 (717)
||++|+++.
T Consensus 299 pt~~ell~h 307 (331)
T 4aaa_A 299 PFCAELLHH 307 (331)
T ss_dssp CCGGGGGGS
T ss_pred CCHHHHhcC
Confidence 999999863
No 214
>2j7t_A Serine/threonine-protein kinase 10; transferase, ATP-binding, cell cycle progression, phosphorylation, disease mutation, nucleotide- binding; HET: 274; 2.0A {Homo sapiens} PDB: 4aot_A* 3zz2_A* 2j51_A* 2jfl_A* 2jfm_A* 2uv2_A*
Probab=100.00 E-value=2.5e-38 Score=326.93 Aligned_cols=254 Identities=22% Similarity=0.327 Sum_probs=197.1
Q ss_pred cccccccccccccCcccccceEEEEeC-CCchhhhHHhHhhhhhHHHHHHHHHHHHhcCCCCceeEEEEeeccccCCCCc
Q 005045 385 SKSTDNFSKENLIGTGSFGSVYKGTLG-DGTIVAIKVLKLQQQGALKSFIDECNALKSTRHRNILRVITACSSVDLEGND 463 (717)
Q Consensus 385 ~~~~~~y~~~~~ig~g~~g~v~~~~~~-~~~~vavK~~~~~~~~~~~~~~~e~~~l~~l~h~ni~~~~~~~~~~~~~~~~ 463 (717)
....++|++.+.||+|+||.||.|.++ +++.||+|++..........+.+|+++++.++||||+++++++. ..+
T Consensus 15 ~~~~~~y~i~~~lg~G~~g~V~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~-----~~~ 89 (302)
T 2j7t_A 15 LDPNEVWEIVGELGDGAFGKVYKAKNKETGALAAAKVIETKSEEELEDYIVEIEILATCDHPYIVKLLGAYY-----HDG 89 (302)
T ss_dssp SCGGGTEEEEEEEECSTTCCEEEEEETTTCCEEEEEEEC----CCHHHHHHHHHHHHHCCCTTBCCEEEEEE-----CC-
T ss_pred cCCccceeecceeccCCCeEEEEEEEcCCCcEEEEEEecCCCHHHHHHHHHHHHHHhcCCCCCEeeeeeeee-----eCC
Confidence 356789999999999999999999976 68999999987665556688899999999999999999999964 345
Q ss_pred eEEEEEecCCCCChhhhccCCCCCcccccccCHHHHHHHHHHHHHHHHHHHhcCCCCeeecCCCCCCEEeCCCCceEEee
Q 005045 464 FKALVFEFMSNGNLDQWLHPSPAEHYQFKKLSVIQRLNIAIDVASALDYLHHHCDTPIAHCDLKPSNVLLDKDMTAHVGD 543 (717)
Q Consensus 464 ~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~dlkp~NIll~~~~~~kl~D 543 (717)
..++||||+++++|.+++.... ..+++..+..++.||+.||+|||+. +++||||||+||+++.++.+||+|
T Consensus 90 ~~~lv~e~~~~~~l~~~~~~~~------~~~~~~~~~~~~~~i~~~l~~lH~~---~i~H~dlkp~Nil~~~~~~~kl~D 160 (302)
T 2j7t_A 90 KLWIMIEFCPGGAVDAIMLELD------RGLTEPQIQVVCRQMLEALNFLHSK---RIIHRDLKAGNVLMTLEGDIRLAD 160 (302)
T ss_dssp CEEEEEECCTTEEHHHHHHHHT------SCCCHHHHHHHHHHHHHHHHHHHHT---TCCCCCCSGGGEEECTTSCEEECC
T ss_pred eEEEEEEeCCCCcHHHHHHhhc------cCCCHHHHHHHHHHHHHHHHHHhcC---CcccCCCCHHHEEECCCCCEEEEE
Confidence 8999999999999999886432 4689999999999999999999998 999999999999999999999999
Q ss_pred eccchhcccccCCCCCCcceeecccccccccCCCcc------CCCCCcccchhhHHHHHHHHHhCCCCCCCCCCCchhhh
Q 005045 544 FGLAKFLFEISDNPSKNQTVSIGLKGSIGYIPPEHM------NGQVSILGDIYSYGILLLEMFTGKRPTGDMFKDDFSIH 617 (717)
Q Consensus 544 fg~~~~~~~~~~~~~~~~~~~~~~~~~~~y~aPE~~------~~~~~~~sDvwslG~vl~elltg~~p~~~~~~~~~~~~ 617 (717)
||.+....... .......|++.|+|||++ .+.++.++|||||||++|+|++|..||........ ..
T Consensus 161 fg~~~~~~~~~-------~~~~~~~~~~~y~aPE~~~~~~~~~~~~~~~~Di~slG~il~~l~~g~~p~~~~~~~~~-~~ 232 (302)
T 2j7t_A 161 FGVSAKNLKTL-------QKRDSFIGTPYWMAPEVVMCETMKDTPYDYKADIWSLGITLIEMAQIEPPHHELNPMRV-LL 232 (302)
T ss_dssp CHHHHHHHHHH-------HC-----CCGGGCCHHHHHHHHTTSTTTTTHHHHHHHHHHHHHHHHSSCTTTTSCHHHH-HH
T ss_pred CCCCccccccc-------cccccccCChhhcCCeeeccccCCCCCCchhhhHHHHHHHHHHHhcCCCCCccCCHHHH-HH
Confidence 99876432111 111234589999999996 34578999999999999999999999975432111 00
Q ss_pred HHHHhcCChhhhhhcCCCCCCCCCCcHHHHHHHHHHHHHHhhhhhhhcchhhhHHHHHHHHHHhhccCCCCcCCCCCHHH
Q 005045 618 MFVSMALPDHVMDILDPSMPLDEENDEEQIEEVIEEKEMMIHIDLEVNTKNKLEECFVSVLRIGLMCSTTSPRERIAMNV 697 (717)
Q Consensus 618 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~cl~~~p~~Rps~~e 697 (717)
...... .+.. ..+..++..+.+++.+||+.+|++|||+.|
T Consensus 233 ~~~~~~---------~~~~-------------------------------~~~~~~~~~l~~li~~~l~~dp~~Rps~~~ 272 (302)
T 2j7t_A 233 KIAKSD---------PPTL-------------------------------LTPSKWSVEFRDFLKIALDKNPETRPSAAQ 272 (302)
T ss_dssp HHHHSC---------CCCC-------------------------------SSGGGSCHHHHHHHHHHSCSCTTTSCCHHH
T ss_pred HHhccC---------Cccc-------------------------------CCccccCHHHHHHHHHHcccChhhCCCHHH
Confidence 000000 0000 011223556889999999999999999999
Q ss_pred HHH
Q 005045 698 VVN 700 (717)
Q Consensus 698 il~ 700 (717)
+++
T Consensus 273 ll~ 275 (302)
T 2j7t_A 273 LLE 275 (302)
T ss_dssp HTT
T ss_pred Hhc
Confidence 985
No 215
>1u5q_A Serine/threonine protein kinase TAO2; transferase; HET: SEP; 2.10A {Rattus norvegicus} SCOP: d.144.1.7 PDB: 1u5r_A* 2gcd_A*
Probab=100.00 E-value=3.1e-38 Score=331.80 Aligned_cols=247 Identities=25% Similarity=0.347 Sum_probs=195.7
Q ss_pred cccccccccccCcccccceEEEEe-CCCchhhhHHhHhh---hhhHHHHHHHHHHHHhcCCCCceeEEEEeeccccCCCC
Q 005045 387 STDNFSKENLIGTGSFGSVYKGTL-GDGTIVAIKVLKLQ---QQGALKSFIDECNALKSTRHRNILRVITACSSVDLEGN 462 (717)
Q Consensus 387 ~~~~y~~~~~ig~g~~g~v~~~~~-~~~~~vavK~~~~~---~~~~~~~~~~e~~~l~~l~h~ni~~~~~~~~~~~~~~~ 462 (717)
..++|++.+.||+|+||.||+|++ .+++.||+|++... .....+.+.+|++++++++||||+++++++.. .
T Consensus 52 ~~~~y~~~~~lG~G~~g~Vy~a~~~~~~~~vaiK~~~~~~~~~~~~~~~~~~E~~~l~~l~hpniv~~~~~~~~-----~ 126 (348)
T 1u5q_A 52 PEKLFSDLREIGHGSFGAVYFARDVRNSEVVAIKKMSYSGKQSNEKWQDIIKEVRFLQKLRHPNTIQYRGCYLR-----E 126 (348)
T ss_dssp HHHHEEEEEEEEECSSEEEEEEEETTTTEEEEEEEEESCSSCHHHHHHHHHHHHHHHHHCCCTTBCCEEEEEEE-----T
T ss_pred hhhheeeeeEEccCCCEEEEEEEEccCCeEEEEEEEccccccchHHHHHHHHHHHHHHhCCCCCEeeEEEEEEE-----C
Confidence 456799999999999999999996 48999999998643 23345678899999999999999999999643 4
Q ss_pred ceEEEEEecCCCCChhhhccCCCCCcccccccCHHHHHHHHHHHHHHHHHHHhcCCCCeeecCCCCCCEEeCCCCceEEe
Q 005045 463 DFKALVFEFMSNGNLDQWLHPSPAEHYQFKKLSVIQRLNIAIDVASALDYLHHHCDTPIAHCDLKPSNVLLDKDMTAHVG 542 (717)
Q Consensus 463 ~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~dlkp~NIll~~~~~~kl~ 542 (717)
+..++||||++ |++.+++.... ..+++..+..++.|++.||+|||+. +|+||||||+||+++.++.+||+
T Consensus 127 ~~~~lv~e~~~-g~l~~~l~~~~------~~l~~~~~~~i~~qi~~aL~~LH~~---~ivH~Dlkp~NIll~~~~~~kL~ 196 (348)
T 1u5q_A 127 HTAWLVMEYCL-GSASDLLEVHK------KPLQEVEIAAVTHGALQGLAYLHSH---NMIHRDVKAGNILLSEPGLVKLG 196 (348)
T ss_dssp TEEEEEEECCS-EEHHHHHHHHT------SCCCHHHHHHHHHHHHHHHHHHHHT---TCBCCCCSGGGEEEETTTEEEEC
T ss_pred CeEEEEEecCC-CCHHHHHHHhc------CCCCHHHHHHHHHHHHHHHHHHHhC---CeeeCCCCHHHEEECCCCCEEEe
Confidence 58999999996 68888775322 5689999999999999999999998 99999999999999999999999
Q ss_pred eeccchhcccccCCCCCCcceeecccccccccCCCcc----CCCCCcccchhhHHHHHHHHHhCCCCCCCCCCCchhhhH
Q 005045 543 DFGLAKFLFEISDNPSKNQTVSIGLKGSIGYIPPEHM----NGQVSILGDIYSYGILLLEMFTGKRPTGDMFKDDFSIHM 618 (717)
Q Consensus 543 Dfg~~~~~~~~~~~~~~~~~~~~~~~~~~~y~aPE~~----~~~~~~~sDvwslG~vl~elltg~~p~~~~~~~~~~~~~ 618 (717)
|||.+..... .....||+.|+|||++ .+.++.++|||||||++|||++|..||........ ...
T Consensus 197 DfG~a~~~~~-----------~~~~~gt~~y~aPE~~~~~~~~~~~~~~DiwslG~il~ell~g~~p~~~~~~~~~-~~~ 264 (348)
T 1u5q_A 197 DFGSASIMAP-----------ANSFVGTPYWMAPEVILAMDEGQYDGKVDVWSLGITCIELAERKPPLFNMNAMSA-LYH 264 (348)
T ss_dssp CCTTCBSSSS-----------BCCCCSCGGGCCHHHHHTTSSCCBCTHHHHHHHHHHHHHHHHSSCTTTTSCHHHH-HHH
T ss_pred eccCceecCC-----------CCcccCCcceeCHhhhccccCCCCCcHHHHHHHHHHHHHHHhCCCCCCCCChHHH-HHH
Confidence 9999976511 1234689999999996 34589999999999999999999999965422111 000
Q ss_pred HHHhcCChhhhhhcCCCCCCCCCCcHHHHHHHHHHHHHHhhhhhhhcchhhhHHHHHHHHHHhhccCCCCcCCCCCHHHH
Q 005045 619 FVSMALPDHVMDILDPSMPLDEENDEEQIEEVIEEKEMMIHIDLEVNTKNKLEECFVSVLRIGLMCSTTSPRERIAMNVV 698 (717)
Q Consensus 619 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~cl~~~p~~Rps~~ei 698 (717)
.... ..+... ...++..+.+++.+||+.+|++|||++|+
T Consensus 265 ~~~~---------~~~~~~--------------------------------~~~~~~~l~~li~~~l~~dP~~Rps~~~l 303 (348)
T 1u5q_A 265 IAQN---------ESPALQ--------------------------------SGHWSEYFRNFVDSCLQKIPQDRPTSEVL 303 (348)
T ss_dssp HHHS---------CCCCCC--------------------------------CTTSCHHHHHHHHHHTCSSGGGSCCHHHH
T ss_pred HHhc---------CCCCCC--------------------------------CCCCCHHHHHHHHHHcccChhhCcCHHHH
Confidence 0000 001100 01124567889999999999999999999
Q ss_pred HHH
Q 005045 699 VNN 701 (717)
Q Consensus 699 l~~ 701 (717)
++.
T Consensus 304 l~h 306 (348)
T 1u5q_A 304 LKH 306 (348)
T ss_dssp TTC
T ss_pred hhC
Confidence 853
No 216
>2h6d_A 5'-AMP-activated protein kinase catalytic subunit alpha-2; ATP-binding, cholesterol biosynthesis, fatty acid biosynthesis;kinase, lipid synthesis; 1.85A {Homo sapiens} PDB: 3aqv_A* 2yza_A*
Probab=100.00 E-value=9.9e-38 Score=317.92 Aligned_cols=251 Identities=26% Similarity=0.381 Sum_probs=193.3
Q ss_pred ccccccccccccccCcccccceEEEEeC-CCchhhhHHhHhhh---hhHHHHHHHHHHHHhcCCCCceeEEEEeeccccC
Q 005045 384 ISKSTDNFSKENLIGTGSFGSVYKGTLG-DGTIVAIKVLKLQQ---QGALKSFIDECNALKSTRHRNILRVITACSSVDL 459 (717)
Q Consensus 384 ~~~~~~~y~~~~~ig~g~~g~v~~~~~~-~~~~vavK~~~~~~---~~~~~~~~~e~~~l~~l~h~ni~~~~~~~~~~~~ 459 (717)
.....++|++.+.||+|++|.||.|.++ +|+.||+|++.... ......+.+|+++++.++||||+++++++.
T Consensus 6 g~~~~~~y~i~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~---- 81 (276)
T 2h6d_A 6 GRVKIGHYVLGDTLGVGTFGKVKIGEHQLTGHKVAVKILNRQKIRSLDVVGKIKREIQNLKLFRHPHIIKLYQVIS---- 81 (276)
T ss_dssp -CCEETTEEEEEEEEECSSEEEEEEEETTTCCEEEEEEEEHHHHHHTTCHHHHHHHHHHHHTCCCTTBCCEEEEEE----
T ss_pred CcceeccEEEEeeecCCCCeEEEEEEECCCCceEEEEEeccccccchhHHHHHHHHHHHHhcCCCCCEeEEEEEEe----
Confidence 3445679999999999999999999976 79999999986442 234567889999999999999999999953
Q ss_pred CCCceEEEEEecCCCCChhhhccCCCCCcccccccCHHHHHHHHHHHHHHHHHHHhcCCCCeeecCCCCCCEEeCCCCce
Q 005045 460 EGNDFKALVFEFMSNGNLDQWLHPSPAEHYQFKKLSVIQRLNIAIDVASALDYLHHHCDTPIAHCDLKPSNVLLDKDMTA 539 (717)
Q Consensus 460 ~~~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~dlkp~NIll~~~~~~ 539 (717)
..+..++||||+++++|.+++... ..+++..+..++.||+.||+|||+. +++||||||+||+++.++.+
T Consensus 82 -~~~~~~lv~e~~~~~~L~~~l~~~-------~~~~~~~~~~~~~qi~~~l~~lH~~---~i~H~dl~p~Nil~~~~~~~ 150 (276)
T 2h6d_A 82 -TPTDFFMVMEYVSGGELFDYICKH-------GRVEEMEARRLFQQILSAVDYCHRH---MVVHRDLKPENVLLDAHMNA 150 (276)
T ss_dssp -CSSEEEEEEECCCSCBHHHHHHHH-------CSCCHHHHHHHHHHHHHHHHHHHHH---CSSCCCCCGGGEEECTTSCE
T ss_pred -cCCeEEEEEeccCCCcHHHHHhcc-------CCCCHHHHHHHHHHHHHHHHHHHHC---CCccCCCChhhEEECCCCCE
Confidence 455899999999999999998744 4689999999999999999999998 99999999999999999999
Q ss_pred EEeeeccchhcccccCCCCCCcceeecccccccccCCCccCCC-C-CcccchhhHHHHHHHHHhCCCCCCCCCCCchhhh
Q 005045 540 HVGDFGLAKFLFEISDNPSKNQTVSIGLKGSIGYIPPEHMNGQ-V-SILGDIYSYGILLLEMFTGKRPTGDMFKDDFSIH 617 (717)
Q Consensus 540 kl~Dfg~~~~~~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~-~-~~~sDvwslG~vl~elltg~~p~~~~~~~~~~~~ 617 (717)
||+|||.+..... ........+++.|+|||++.+. + +.++||||||+++|+|++|..||...... ...
T Consensus 151 ~l~dfg~~~~~~~--------~~~~~~~~~~~~y~aPE~~~~~~~~~~~~Di~slG~~l~~l~~g~~p~~~~~~~--~~~ 220 (276)
T 2h6d_A 151 KIADFGLSNMMSD--------GEFLRTSCGSPNYAAPEVISGRLYAGPEVDIWSCGVILYALLCGTLPFDDEHVP--TLF 220 (276)
T ss_dssp EECCCCGGGCCCC---------------------CCTGGGTTSCCCHHHHHHHHHHHHHHHHHHSSCSSCCSSHH--HHH
T ss_pred EEeecccccccCC--------CcceecccCCccccCHHHHcCCCCCCccchHHHHHHHHHHHHhCCCCCCCCcHH--HHH
Confidence 9999999876521 1112234588999999998765 3 68999999999999999999999653211 111
Q ss_pred HHHHhcCChhhhhhcCCCCCCCCCCcHHHHHHHHHHHHHHhhhhhhhcchhhhHHHHHHHHHHhhccCCCCcCCCCCHHH
Q 005045 618 MFVSMALPDHVMDILDPSMPLDEENDEEQIEEVIEEKEMMIHIDLEVNTKNKLEECFVSVLRIGLMCSTTSPRERIAMNV 697 (717)
Q Consensus 618 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~cl~~~p~~Rps~~e 697 (717)
...... ... .+..++..+.+++.+||+.+|++|||+.|
T Consensus 221 ~~~~~~-----------~~~-------------------------------~~~~~~~~l~~li~~~l~~~p~~Rps~~~ 258 (276)
T 2h6d_A 221 KKIRGG-----------VFY-------------------------------IPEYLNRSVATLLMHMLQVDPLKRATIKD 258 (276)
T ss_dssp HHHHHC-----------CCC-------------------------------CCTTSCHHHHHHHHHHTCSSGGGSCCHHH
T ss_pred HHhhcC-----------ccc-------------------------------CchhcCHHHHHHHHHHccCChhhCCCHHH
Confidence 111000 000 00112456788999999999999999999
Q ss_pred HHHH
Q 005045 698 VVNN 701 (717)
Q Consensus 698 il~~ 701 (717)
+++.
T Consensus 259 ~l~h 262 (276)
T 2h6d_A 259 IREH 262 (276)
T ss_dssp HHHS
T ss_pred HHhC
Confidence 9874
No 217
>3pg1_A Mitogen-activated protein kinase, putative (MAP K protein); EPK Ser/Thr protein kinase fold, Ser/Thr protein kinase, TRA; 1.95A {Leishmania major} PDB: 3uib_A*
Probab=100.00 E-value=7.2e-38 Score=332.15 Aligned_cols=280 Identities=21% Similarity=0.219 Sum_probs=203.3
Q ss_pred CcccccccccccccccccCcccccceEEEEeCCCchhhhHHhHhh-----------hhhHHHHHHHHHHHHhcCCCCcee
Q 005045 380 SYSDISKSTDNFSKENLIGTGSFGSVYKGTLGDGTIVAIKVLKLQ-----------QQGALKSFIDECNALKSTRHRNIL 448 (717)
Q Consensus 380 s~~~~~~~~~~y~~~~~ig~g~~g~v~~~~~~~~~~vavK~~~~~-----------~~~~~~~~~~e~~~l~~l~h~ni~ 448 (717)
.+.++....++|++.+.||+|+||.||.|.+.+|+.||+|++... .....+.+.+|++++++++||||+
T Consensus 13 ~~~~~~~~~~~y~~~~~lg~G~~g~V~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv 92 (362)
T 3pg1_A 13 LIAELHAMQSPYTVQRFISSGSYGAVCAGVDSEGIPVAIKRVFNTVSDGRTVNILSDSFLCKRVLREIRLLNHFHHPNIL 92 (362)
T ss_dssp HHHHHHHTTCSCEEEEEEEEETTEEEEEEECTTSCEEEEEEECEECCTTSCEEGGGSHHHHHHHHHHHHHHHHCCCTTBC
T ss_pred HHHHHHHhccceEEeEEeccCCCEEEEEEECCCCCeEEEEeccccCCccchhhhhhhhhHHHHHHHHHHHHHhCCCcCcc
Confidence 345667778999999999999999999999888999999988532 122347889999999999999999
Q ss_pred EEEEeeccccCCCCceEEEEEecCCCCChhhhccCCCCCcccccccCHHHHHHHHHHHHHHHHHHHhcCCCCeeecCCCC
Q 005045 449 RVITACSSVDLEGNDFKALVFEFMSNGNLDQWLHPSPAEHYQFKKLSVIQRLNIAIDVASALDYLHHHCDTPIAHCDLKP 528 (717)
Q Consensus 449 ~~~~~~~~~~~~~~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~dlkp 528 (717)
++++++...........++||||++ +++.+++.... ..+++..+..++.||+.||+|||+. +|+||||||
T Consensus 93 ~~~~~~~~~~~~~~~~~~lv~e~~~-~~l~~~~~~~~------~~~~~~~~~~~~~qi~~~l~~lH~~---~ivH~Dlkp 162 (362)
T 3pg1_A 93 GLRDIFVHFEEPAMHKLYLVTELMR-TDLAQVIHDQR------IVISPQHIQYFMYHILLGLHVLHEA---GVVHRDLHP 162 (362)
T ss_dssp CCSEEEEECCTTTCCEEEEEEECCS-EEHHHHHHCTT------SCCCHHHHHHHHHHHHHHHHHHHHT---TCCCCCCCG
T ss_pred ceeeeEEeccCCCcceEEEEEccCC-CCHHHHHHhcc------cCCCHHHHHHHHHHHHHHHHHHHHC---cCEecCCCh
Confidence 9999876544345567899999996 68888876542 4689999999999999999999998 999999999
Q ss_pred CCEEeCCCCceEEeeeccchhcccccCCCCCCcceeecccccccccCCCccCC--CCCcccchhhHHHHHHHHHhCCCCC
Q 005045 529 SNVLLDKDMTAHVGDFGLAKFLFEISDNPSKNQTVSIGLKGSIGYIPPEHMNG--QVSILGDIYSYGILLLEMFTGKRPT 606 (717)
Q Consensus 529 ~NIll~~~~~~kl~Dfg~~~~~~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~--~~~~~sDvwslG~vl~elltg~~p~ 606 (717)
+||+++.++.+||+|||.+..... ........+++.|+|||++.+ .++.++|||||||++|+|++|..||
T Consensus 163 ~NIl~~~~~~~kl~Dfg~~~~~~~--------~~~~~~~~~t~~y~aPE~~~~~~~~~~~~DiwslG~il~~l~~g~~pf 234 (362)
T 3pg1_A 163 GNILLADNNDITICDFNLAREDTA--------DANKTHYVTHRWYRAPELVMQFKGFTKLVDMWSAGCVMAEMFNRKALF 234 (362)
T ss_dssp GGEEECTTCCEEECCTTC-----------------------CGGGCCHHHHTTCTTCCTHHHHHHHHHHHHHHHHSSCSC
T ss_pred HHEEEcCCCCEEEEecCccccccc--------ccccceecccceecCcHHhcCCCCCCcHhHHHhHHHHHHHHHhCCCCC
Confidence 999999999999999999975411 112234568899999999654 5899999999999999999999999
Q ss_pred CCCCCCchhhhHHHHh-cC----------ChhhhhhcCCCCCCCCCCcHHHHHHHHHHHHHHhhhhhhhcchhhhHHHHH
Q 005045 607 GDMFKDDFSIHMFVSM-AL----------PDHVMDILDPSMPLDEENDEEQIEEVIEEKEMMIHIDLEVNTKNKLEECFV 675 (717)
Q Consensus 607 ~~~~~~~~~~~~~~~~-~~----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 675 (717)
........ ....... .. .....+.+.......+.... ......++.
T Consensus 235 ~~~~~~~~-~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------------------~~~~~~~~~ 291 (362)
T 3pg1_A 235 RGSTFYNQ-LNKIVEVVGTPKIEDVVMFSSPSARDYLRNSLSNVPARAW----------------------TAVVPTADP 291 (362)
T ss_dssp CCSSHHHH-HHHHHHHHCCCCHHHHHHTSCHHHHHHTTTCCCCCCCCCH----------------------HHHSTTSCH
T ss_pred CCCCHHHH-HHHHHHHcCCCChHHhhhccchhhhHHHHhhcccCChhhH----------------------HhhCCCCCH
Confidence 76432211 1111100 00 01111222222211111110 011122355
Q ss_pred HHHHHhhccCCCCcCCCCCHHHHHH
Q 005045 676 SVLRIGLMCSTTSPRERIAMNVVVN 700 (717)
Q Consensus 676 ~l~~li~~cl~~~p~~Rps~~eil~ 700 (717)
.+.+++.+||+.+|++|||+.|+++
T Consensus 292 ~~~~li~~~L~~dP~~Rpt~~ell~ 316 (362)
T 3pg1_A 292 VALDLIAKMLEFNPQRRISTEQALR 316 (362)
T ss_dssp HHHHHHHHHTCSSGGGSCCHHHHHT
T ss_pred HHHHHHHHHhcCChhhCCCHHHHHc
Confidence 6889999999999999999999986
No 218
>3n9x_A Phosphotransferase; malaria kinase, structural genomics, structural genomics CON SGC; 2.05A {Plasmodium berghei} PDB: 3nie_A*
Probab=100.00 E-value=4e-38 Score=341.33 Aligned_cols=211 Identities=25% Similarity=0.295 Sum_probs=170.1
Q ss_pred cccccccccccCcccccceEEEEeC-CCchhhhHHhHhh--hhhHHHHHHHHHHHHhcCCCCceeEEEEeeccccCCCCc
Q 005045 387 STDNFSKENLIGTGSFGSVYKGTLG-DGTIVAIKVLKLQ--QQGALKSFIDECNALKSTRHRNILRVITACSSVDLEGND 463 (717)
Q Consensus 387 ~~~~y~~~~~ig~g~~g~v~~~~~~-~~~~vavK~~~~~--~~~~~~~~~~e~~~l~~l~h~ni~~~~~~~~~~~~~~~~ 463 (717)
..++|++.+.||+|+||.||+|.++ +++.||+|++... .....+++.+|++++++++||||+++++++.........
T Consensus 24 i~~~y~~~~~lG~G~~g~V~~a~~~~~~~~vAiK~~~~~~~~~~~~~~~~~E~~~l~~l~h~nIv~l~~~~~~~~~~~~~ 103 (432)
T 3n9x_A 24 VPDNYIIKHLIGRGSYGYVYLAYDKNTEKNVAIKKVNRMFEDLIDCKRILREITILNRLKSDYIIRLYDLIIPDDLLKFD 103 (432)
T ss_dssp CCTTEEEEEEEEEETTEEEEEEEETTTTEEEEEEEECSTTTSHHHHHHHHHHHHHHHHCCCTTBCCEEEECCCSCTTTCC
T ss_pred ecCCEEEEEEEeecCCEEEEEEEECCCCcEEEEEEeCchhcChHHHHHHHHHHHHHHHcCCCCcceEEEEEecCCCCcCC
Confidence 3579999999999999999999965 7899999998643 334467889999999999999999999997654444446
Q ss_pred eEEEEEecCCCCChhhhccCCCCCcccccccCHHHHHHHHHHHHHHHHHHHhcCCCCeeecCCCCCCEEeCCCCceEEee
Q 005045 464 FKALVFEFMSNGNLDQWLHPSPAEHYQFKKLSVIQRLNIAIDVASALDYLHHHCDTPIAHCDLKPSNVLLDKDMTAHVGD 543 (717)
Q Consensus 464 ~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~dlkp~NIll~~~~~~kl~D 543 (717)
..|+||||++ ++|.+++... ..+++..++.++.||+.||+|||+. +|+||||||+||+++.++.+||+|
T Consensus 104 ~~~lv~e~~~-~~L~~~~~~~-------~~l~~~~~~~i~~qil~aL~~LH~~---givHrDlkp~NILl~~~~~~kL~D 172 (432)
T 3n9x_A 104 ELYIVLEIAD-SDLKKLFKTP-------IFLTEEHIKTILYNLLLGENFIHES---GIIHRDLKPANCLLNQDCSVKVCD 172 (432)
T ss_dssp CEEEEEECCS-EEHHHHHHSS-------CCCCHHHHHHHHHHHHHHHHHHHHT---TEECCCCCGGGEEECTTCCEEECC
T ss_pred eEEEEEecCC-cCHHHHHhcc-------CCCCHHHHHHHHHHHHHHHHHHHHC---CCCCCCCCHHHeEECCCCCEEEcc
Confidence 7999999985 6999999754 5689999999999999999999998 999999999999999999999999
Q ss_pred eccchhcccccCCCC---------------CCcceeecccccccccCCCcc-CC-CCCcccchhhHHHHHHHHHhCCCCC
Q 005045 544 FGLAKFLFEISDNPS---------------KNQTVSIGLKGSIGYIPPEHM-NG-QVSILGDIYSYGILLLEMFTGKRPT 606 (717)
Q Consensus 544 fg~~~~~~~~~~~~~---------------~~~~~~~~~~~~~~y~aPE~~-~~-~~~~~sDvwslG~vl~elltg~~p~ 606 (717)
||+++.......... ..........||+.|+|||++ .+ .++.++||||+||++|||++|..||
T Consensus 173 FGla~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~Y~APE~~~~~~~~~~~~DiwSlG~il~ell~g~~p~ 252 (432)
T 3n9x_A 173 FGLARTINSEKDTNIVNDLEENEEPGPHNKNLKKQLTSHVVTRWYRAPELILLQENYTKSIDIWSTGCIFAELLNMLQSH 252 (432)
T ss_dssp CTTCEEC-------------------------------CCCCCTTCCHHHHTTCSCCCTHHHHHHHHHHHHHHHTTCTTT
T ss_pred CCCcccccccccccccccccccccccccccchhccccCCCCCccccCHHHHhcCCCCCcccccchHHHHHHHHHhccccc
Confidence 999987632211100 000123456789999999984 33 4899999999999999999976666
Q ss_pred CC
Q 005045 607 GD 608 (717)
Q Consensus 607 ~~ 608 (717)
..
T Consensus 253 ~~ 254 (432)
T 3n9x_A 253 IN 254 (432)
T ss_dssp CS
T ss_pred cc
Confidence 43
No 219
>2w5a_A Serine/threonine-protein kinase NEK2; Ser/Thr protein kinase, nucleus, meiosis, mitosis, cytoplasm, metal-binding, phosphoprotein; HET: ADP; 1.55A {Homo sapiens} PDB: 2wqo_A* 2xk3_A* 2xk4_A* 2xk6_A* 2xk7_A* 2xk8_A* 2xkc_A* 2xkd_A* 2xke_A* 2xkf_A* 2xnm_A* 2xnn_A* 2xno_A* 2xnp_A* 4afe_A* 2jav_A* 2w5b_A* 2w5h_A 4a4x_A*
Probab=100.00 E-value=2.6e-38 Score=322.77 Aligned_cols=258 Identities=24% Similarity=0.321 Sum_probs=200.9
Q ss_pred ccccccccccccCcccccceEEEEeC-CCchhhhHHhHhh--hhhHHHHHHHHHHHHhcCCCCceeEEEEeeccccCCCC
Q 005045 386 KSTDNFSKENLIGTGSFGSVYKGTLG-DGTIVAIKVLKLQ--QQGALKSFIDECNALKSTRHRNILRVITACSSVDLEGN 462 (717)
Q Consensus 386 ~~~~~y~~~~~ig~g~~g~v~~~~~~-~~~~vavK~~~~~--~~~~~~~~~~e~~~l~~l~h~ni~~~~~~~~~~~~~~~ 462 (717)
...++|++.+.||+|++|.||+|.++ +++.||+|.+... .....+.+.+|++++++++||||+++++++.. ...
T Consensus 3 ~~~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~---~~~ 79 (279)
T 2w5a_A 3 SRAEDYEVLYTIGTGSYGRCQKIRRKSDGKILVWKELDYGSMTEAEKQMLVSEVNLLRELKHPNIVRYYDRIID---RTN 79 (279)
T ss_dssp CCGGGEEEEEEEEECSSSEEEEEEETTTCCEEEEEEEECTTCCHHHHHHHHHHHHHHHHCCCTTBCCEEEEEEE---GGG
T ss_pred CchhheeeehhccCCCCcEEEEEEECCCCcEEEEEEEEcccCCHHHHHHHHHHHHHHHhcCCCCCCeEEEEEec---CCC
Confidence 34679999999999999999999965 7899999998643 23456788999999999999999999997642 234
Q ss_pred ceEEEEEecCCCCChhhhccCCCCCcccccccCHHHHHHHHHHHHHHHHHHHhcCCCC-----eeecCCCCCCEEeCCCC
Q 005045 463 DFKALVFEFMSNGNLDQWLHPSPAEHYQFKKLSVIQRLNIAIDVASALDYLHHHCDTP-----IAHCDLKPSNVLLDKDM 537 (717)
Q Consensus 463 ~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~i~~~i~~~l~~LH~~~~~~-----ivH~dlkp~NIll~~~~ 537 (717)
...++||||+++++|.+++..... ....+++..+..++.|++.||+|||+. + ++||||||+||+++.++
T Consensus 80 ~~~~lv~e~~~~~~L~~~l~~~~~---~~~~~~~~~~~~i~~~i~~~l~~lH~~---~~~~~~ivH~dl~p~NIl~~~~~ 153 (279)
T 2w5a_A 80 TTLYIVMEYCEGGDLASVITKGTK---ERQYLDEEFVLRVMTQLTLALKECHRR---SDGGHTVLHRDLKPANVFLDGKQ 153 (279)
T ss_dssp TEEEEEEECCTTEEHHHHHHHHHH---TTCCCCHHHHHHHHHHHHHHHHHHHHH---C------CCCCCSGGGEEECSSS
T ss_pred ceEEEEEeCCCCCCHHHHHHhhcc---cCCCCCHHHHHHHHHHHHHHHHHHhcc---cCCCCeeEEeccchhhEEEcCCC
Confidence 578999999999999999864311 113489999999999999999999998 7 99999999999999999
Q ss_pred ceEEeeeccchhcccccCCCCCCcceeecccccccccCCCccCC-CCCcccchhhHHHHHHHHHhCCCCCCCCCCCchhh
Q 005045 538 TAHVGDFGLAKFLFEISDNPSKNQTVSIGLKGSIGYIPPEHMNG-QVSILGDIYSYGILLLEMFTGKRPTGDMFKDDFSI 616 (717)
Q Consensus 538 ~~kl~Dfg~~~~~~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~-~~~~~sDvwslG~vl~elltg~~p~~~~~~~~~~~ 616 (717)
.+||+|||.+..... .........|+..|+|||++.+ .++.++|||||||++|+|++|..||...... ..
T Consensus 154 ~~kl~dfg~~~~~~~-------~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~g~~p~~~~~~~--~~ 224 (279)
T 2w5a_A 154 NVKLGDFGLARILNH-------DTSFAKTFVGTPYYMSPEQMNRMSYNEKSDIWSLGCLLYELCALMPPFTAFSQK--EL 224 (279)
T ss_dssp CEEECCCCHHHHC----------CHHHHHHHSCCTTCCHHHHHCC-CCHHHHHHHHHHHHHHHHHSSCSSCCSSHH--HH
T ss_pred CEEEecCchheeecc-------ccccccccCCCccccChHHhccCCCCchhhHHHHHHHHHHHHHCCCCCcccCHH--HH
Confidence 999999999986521 1112233568999999999655 5899999999999999999999999764221 11
Q ss_pred hHHHHhcCChhhhhhcCCCCCCCCCCcHHHHHHHHHHHHHHhhhhhhhcchhhhHHHHHHHHHHhhccCCCCcCCCCCHH
Q 005045 617 HMFVSMALPDHVMDILDPSMPLDEENDEEQIEEVIEEKEMMIHIDLEVNTKNKLEECFVSVLRIGLMCSTTSPRERIAMN 696 (717)
Q Consensus 617 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~cl~~~p~~Rps~~ 696 (717)
....... ..+.+ +..++..+.+++.+||+.+|++|||+.
T Consensus 225 ~~~i~~~--------~~~~~---------------------------------~~~~~~~l~~li~~~l~~~p~~Rps~~ 263 (279)
T 2w5a_A 225 AGKIREG--------KFRRI---------------------------------PYRYSDELNEIITRMLNLKDYHRPSVE 263 (279)
T ss_dssp HHHHHHT--------CCCCC---------------------------------CTTSCHHHHHHHHHHTCSSGGGSCCHH
T ss_pred HHHHhhc--------ccccC---------------------------------CcccCHHHHHHHHHHcCCCcccCCCHH
Confidence 1111000 00011 112255688999999999999999999
Q ss_pred HHHHHH
Q 005045 697 VVVNNL 702 (717)
Q Consensus 697 eil~~l 702 (717)
||++..
T Consensus 264 ~ll~~~ 269 (279)
T 2w5a_A 264 EILENP 269 (279)
T ss_dssp HHHTST
T ss_pred HHHhCh
Confidence 999754
No 220
>2jam_A Calcium/calmodulin-dependent protein kinase type 1G; transferase, kinase, membrane, ATP-binding, prenylation, serine/threonine-protein kinase, alternative splicing; HET: J60; 1.7A {Homo sapiens} PDB: 2jc6_A* 1a06_A
Probab=100.00 E-value=8.2e-38 Score=323.26 Aligned_cols=250 Identities=22% Similarity=0.306 Sum_probs=196.2
Q ss_pred cccccccccccCcccccceEEEEeC-CCchhhhHHhHhhhhhHHHHHHHHHHHHhcCCCCceeEEEEeeccccCCCCceE
Q 005045 387 STDNFSKENLIGTGSFGSVYKGTLG-DGTIVAIKVLKLQQQGALKSFIDECNALKSTRHRNILRVITACSSVDLEGNDFK 465 (717)
Q Consensus 387 ~~~~y~~~~~ig~g~~g~v~~~~~~-~~~~vavK~~~~~~~~~~~~~~~e~~~l~~l~h~ni~~~~~~~~~~~~~~~~~~ 465 (717)
..++|.+.+.||+|+||.||.|++. +|+.||+|++..........+.+|++++++++||||+++++++. +.+..
T Consensus 7 ~~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~-----~~~~~ 81 (304)
T 2jam_A 7 IRKTFIFMEVLGSGAFSEVFLVKQRLTGKLFALKCIKKSPAFRDSSLENEIAVLKKIKHENIVTLEDIYE-----STTHY 81 (304)
T ss_dssp HHHHEEEEEEEEECSSEEEEEEEETTTCCEEEEEEEECC------HHHHHHHHHHHCCCTTBCCEEEEEE-----CSSEE
T ss_pred hhccceeeeeccCCCCceEEEEEECCCCCEEEEEEEecccccchHHHHHHHHHHHhCCCCCeeehhhhcc-----cCCEE
Confidence 3568999999999999999999965 79999999987554444567889999999999999999999853 45589
Q ss_pred EEEEecCCCCChhhhccCCCCCcccccccCHHHHHHHHHHHHHHHHHHHhcCCCCeeecCCCCCCEEe---CCCCceEEe
Q 005045 466 ALVFEFMSNGNLDQWLHPSPAEHYQFKKLSVIQRLNIAIDVASALDYLHHHCDTPIAHCDLKPSNVLL---DKDMTAHVG 542 (717)
Q Consensus 466 ~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~dlkp~NIll---~~~~~~kl~ 542 (717)
++||||+++++|.+++... ..+++..+..++.||+.||+|||+. +++||||||+||++ +.++.+||+
T Consensus 82 ~lv~e~~~~~~L~~~l~~~-------~~~~~~~~~~~~~qi~~~l~~lH~~---~i~H~dikp~NIl~~~~~~~~~~kl~ 151 (304)
T 2jam_A 82 YLVMQLVSGGELFDRILER-------GVYTEKDASLVIQQVLSAVKYLHEN---GIVHRDLKPENLLYLTPEENSKIMIT 151 (304)
T ss_dssp EEEECCCCSCBHHHHHHHH-------SCCCHHHHHHHHHHHHHHHHHHHHT---TCCCCSCCGGGCEESSSSTTCCEEBC
T ss_pred EEEEEcCCCccHHHHHHHc-------CCCCHHHHHHHHHHHHHHHHHHHHC---CccccCCCHHHEEEecCCCCCCEEEc
Confidence 9999999999999988643 5689999999999999999999998 99999999999999 778899999
Q ss_pred eeccchhcccccCCCCCCcceeecccccccccCCCccCC-CCCcccchhhHHHHHHHHHhCCCCCCCCCCCchhhhHHHH
Q 005045 543 DFGLAKFLFEISDNPSKNQTVSIGLKGSIGYIPPEHMNG-QVSILGDIYSYGILLLEMFTGKRPTGDMFKDDFSIHMFVS 621 (717)
Q Consensus 543 Dfg~~~~~~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~-~~~~~sDvwslG~vl~elltg~~p~~~~~~~~~~~~~~~~ 621 (717)
|||.+.... ........|++.|+|||++.+ .++.++|||||||++|+|++|..||...... .......
T Consensus 152 Dfg~~~~~~---------~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~g~~pf~~~~~~--~~~~~i~ 220 (304)
T 2jam_A 152 DFGLSKMEQ---------NGIMSTACGTPGYVAPEVLAQKPYSKAVDCWSIGVITYILLCGYPPFYEETES--KLFEKIK 220 (304)
T ss_dssp SCSTTCCCC---------CBTTHHHHSCCCBCCTTTBSSCSCCHHHHHHHHHHHHHHHHHSSCTTTTSCHH--HHHHHHH
T ss_pred cCCcceecC---------CCccccccCCCCccChHHhccCCCCchhhHHHHHHHHHHHHHCCCCCCCCCHH--HHHHHHH
Confidence 999987531 111233568999999999765 4899999999999999999999999654221 1111111
Q ss_pred hcCChhhhhhcCCCCCCCCCCcHHHHHHHHHHHHHHhhhhhhhcchhhhHHHHHHHHHHhhccCCCCcCCCCCHHHHHH
Q 005045 622 MALPDHVMDILDPSMPLDEENDEEQIEEVIEEKEMMIHIDLEVNTKNKLEECFVSVLRIGLMCSTTSPRERIAMNVVVN 700 (717)
Q Consensus 622 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~cl~~~p~~Rps~~eil~ 700 (717)
... ..... .....++..+.+++.+||+.+|++|||+.|+++
T Consensus 221 ~~~-----------~~~~~---------------------------~~~~~~~~~~~~li~~~l~~dp~~Rps~~~~l~ 261 (304)
T 2jam_A 221 EGY-----------YEFES---------------------------PFWDDISESAKDFICHLLEKDPNERYTCEKALS 261 (304)
T ss_dssp HCC-----------CCCCT---------------------------TTTTTSCHHHHHHHHHHHCSSTTTSCCHHHHHT
T ss_pred cCC-----------CCCCc---------------------------cccccCCHHHHHHHHHHcCCChhHCcCHHHHhc
Confidence 100 00000 001122556789999999999999999999986
No 221
>3byv_A Rhoptry kinase; malaria, transferase, structural genomics, structural genomics consortium, SGC; 1.80A {Toxoplasma gondii} PDB: 2w1z_A
Probab=100.00 E-value=8.9e-39 Score=340.64 Aligned_cols=265 Identities=14% Similarity=0.164 Sum_probs=194.5
Q ss_pred cccccccccccccccCcccccceEEEEe-CCCchhhhHHhHh---hhhhHHHHHHHHH---HHHhcCCCCceeEEE----
Q 005045 383 DISKSTDNFSKENLIGTGSFGSVYKGTL-GDGTIVAIKVLKL---QQQGALKSFIDEC---NALKSTRHRNILRVI---- 451 (717)
Q Consensus 383 ~~~~~~~~y~~~~~ig~g~~g~v~~~~~-~~~~~vavK~~~~---~~~~~~~~~~~e~---~~l~~l~h~ni~~~~---- 451 (717)
++....++|++.+.||+|+||.||+|++ .+|+.||+|++.. ......+.+.+|+ +++++++||||++++
T Consensus 67 ~~~~~~~~y~~~~~lG~G~~g~V~~a~~~~~~~~vavK~~~~~~~~~~~~~~~~~~E~~~l~~l~~l~hpniv~~~~~~~ 146 (377)
T 3byv_A 67 ELGERPRTLVRGTVLGQEDPYAYLEATDQETGESFEVHVPYFTERPPSNAIKQMKEEVLRLRLLRGIKNQKQAKVHLRFI 146 (377)
T ss_dssp SSSCCCEEEEEEEEEEEETTEEEEEEEC-CCCCEEEEEEEEECC-CCTTHHHHHHHHHHGGGGSTTCCSHHHHHHHHCBC
T ss_pred ecCCCCceEEEcceeecCCCEEEEEEEECCCCcEEEEEEEeeccccchHHHHHHHHHHHHHHhccccCCHHHHHHHhhhh
Confidence 3445678999999999999999999996 4799999999873 2344567888999 555666899999887
Q ss_pred ---Eeecccc-------CCCCc-----eEEEEEecCCCCChhhhccCCCCCcccccccCHHHHHHHHHHHHHHHHHHHhc
Q 005045 452 ---TACSSVD-------LEGND-----FKALVFEFMSNGNLDQWLHPSPAEHYQFKKLSVIQRLNIAIDVASALDYLHHH 516 (717)
Q Consensus 452 ---~~~~~~~-------~~~~~-----~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~i~~~i~~~l~~LH~~ 516 (717)
+++.... +.+.+ ..++||||+ +|+|.+++.....-......+++..+..++.||+.||+|||+.
T Consensus 147 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~lv~E~~-~g~L~~~l~~~~~~~~~~~~l~~~~~~~i~~qi~~aL~~LH~~ 225 (377)
T 3byv_A 147 FPFDLVKDPQKKKMIRVRLDERDMWVLSRFFLYPRM-QSNLQTFGEVLLSHSSTHKSLVHHARLQLTLQVIRLLASLHHY 225 (377)
T ss_dssp CCSEEEECTTSCSEEEC------CEEESEEEEEECC-SEEHHHHHHHHHHTTTTTHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred hhhhhhhccCCccccccccCCCceEEEEEEEEEecc-CCCHHHHHHhccccccccccccHHHHHHHHHHHHHHHHHHHhC
Confidence 3322211 00111 378999999 6899999874311000113345688889999999999999998
Q ss_pred CCCCeeecCCCCCCEEeCCCCceEEeeeccchhcccccCCCCCCcceeecccccccccCCCccCC------------CCC
Q 005045 517 CDTPIAHCDLKPSNVLLDKDMTAHVGDFGLAKFLFEISDNPSKNQTVSIGLKGSIGYIPPEHMNG------------QVS 584 (717)
Q Consensus 517 ~~~~ivH~dlkp~NIll~~~~~~kl~Dfg~~~~~~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~------------~~~ 584 (717)
+|+||||||+||+++.++.+||+|||+++... .......| +.|+|||++.+ .++
T Consensus 226 ---~ivHrDikp~NIll~~~~~~kL~DFG~a~~~~----------~~~~~~~g-~~y~aPE~~~~~~~~~~~~~~~~~~~ 291 (377)
T 3byv_A 226 ---GLVHTYLRPVDIVLDQRGGVFLTGFEHLVRDG----------ARVVSSVS-RGFEPPELEARRATISYHRDRRTLMT 291 (377)
T ss_dssp ---TEECSCCCGGGEEECTTCCEEECCGGGCEETT----------CEEECCCC-TTCCCHHHHHHHTSTHHHHCCEEECC
T ss_pred ---CeecCCCCHHHEEEcCCCCEEEEechhheecC----------CcccCCCC-cCccChhhhcccccccccccccccCC
Confidence 99999999999999999999999999998531 12234557 89999999654 489
Q ss_pred cccchhhHHHHHHHHHhCCCCCCCCCCCchhhhHHHHhcCChhhhhhcCCCCCCCCCCcHHHHHHHHHHHHHHhhhhhhh
Q 005045 585 ILGDIYSYGILLLEMFTGKRPTGDMFKDDFSIHMFVSMALPDHVMDILDPSMPLDEENDEEQIEEVIEEKEMMIHIDLEV 664 (717)
Q Consensus 585 ~~sDvwslG~vl~elltg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 664 (717)
.++|||||||++|||++|..||........ ...+... .
T Consensus 292 ~~~DvwSlG~il~elltg~~Pf~~~~~~~~-------------~~~~~~~-~---------------------------- 329 (377)
T 3byv_A 292 FSFDAWALGLVIYWIWCADLPITKDAALGG-------------SEWIFRS-C---------------------------- 329 (377)
T ss_dssp HHHHHHHHHHHHHHHHHSSCCC------CC-------------SGGGGSS-C----------------------------
T ss_pred hhhhHHHHHHHHHHHHHCCCCCcccccccc-------------hhhhhhh-c----------------------------
Confidence 999999999999999999999965432211 0000000 0
Q ss_pred cchhhhHHHHHHHHHHhhccCCCCcCCCCCHHHHHH--HHHHHHHHHH
Q 005045 665 NTKNKLEECFVSVLRIGLMCSTTSPRERIAMNVVVN--NLKTIRNCFL 710 (717)
Q Consensus 665 ~~~~~~~~~~~~l~~li~~cl~~~p~~Rps~~eil~--~l~~i~~~~~ 710 (717)
..++..+.+++.+||+.+|++|||+.|+++ .+..+++...
T Consensus 330 ------~~~~~~~~~li~~~L~~dp~~Rpt~~e~l~hp~f~~~~~~~~ 371 (377)
T 3byv_A 330 ------KNIPQPVRALLEGFLRYPKEDRLLPLQAMETPEYEQLRTELS 371 (377)
T ss_dssp ------CCCCHHHHHHHHHHTCSSGGGCCCHHHHHTSHHHHHHHHHHH
T ss_pred ------cCCCHHHHHHHHHHcCCCchhCCCHHHHhhChHHHHHHHHHH
Confidence 011456788999999999999999999996 5666665543
No 222
>3qyz_A Mitogen-activated protein kinase 1; transferase, serine/threonine-protein kinase, ATP-binding CE phosphorylation; HET: CME Z8B SO4; 1.46A {Rattus norvegicus} PDB: 2fys_B 1erk_A* 3qyi_A* 3erk_A* 3qyw_A* 4erk_A* 4gsb_A* 4gt3_A* 4gva_A* 2z7l_A* 2erk_A* 1gol_A* 2gph_A 3zu7_A 3zuv_A* 3o71_A 3r63_A 3c9w_A* 2y9q_A* 4fmq_A* ...
Probab=100.00 E-value=1.5e-37 Score=329.64 Aligned_cols=288 Identities=22% Similarity=0.249 Sum_probs=206.5
Q ss_pred ccccccccccccccccCcccccceEEEEeC-CCchhhhHHhHhhh-hhHHHHHHHHHHHHhcCCCCceeEEEEeeccccC
Q 005045 382 SDISKSTDNFSKENLIGTGSFGSVYKGTLG-DGTIVAIKVLKLQQ-QGALKSFIDECNALKSTRHRNILRVITACSSVDL 459 (717)
Q Consensus 382 ~~~~~~~~~y~~~~~ig~g~~g~v~~~~~~-~~~~vavK~~~~~~-~~~~~~~~~e~~~l~~l~h~ni~~~~~~~~~~~~ 459 (717)
.++....++|++.+.||+|+||.||+|.+. +++.||+|++.... ....+.+.+|++++++++||||+++++++.....
T Consensus 20 g~~~~~~~~y~~~~~lG~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~~~~~~~~~~~ 99 (364)
T 3qyz_A 20 GQVFDVGPRYTNLSYIGEGAYGMVCSAYDNLNKVRVAIKKISPFEHQTYCQRTLREIKILLRFRHENIIGINDIIRAPTI 99 (364)
T ss_dssp -CBCCCTTTEEEEEEEEECSSEEEEEEEETTTTEEEEEEEECCTTCHHHHHHHHHHHHHHHHCCCTTBCCCCEEECCSST
T ss_pred cEeccccccEEEEEEeecCCCeEEEEEEECCCCeEEEEEEeccccCcHHHHHHHHHHHHHHhcCCCCCccceeEEecCCc
Confidence 344456679999999999999999999965 78899999986432 3345778899999999999999999999766544
Q ss_pred CCCceEEEEEecCCCCChhhhccCCCCCcccccccCHHHHHHHHHHHHHHHHHHHhcCCCCeeecCCCCCCEEeCCCCce
Q 005045 460 EGNDFKALVFEFMSNGNLDQWLHPSPAEHYQFKKLSVIQRLNIAIDVASALDYLHHHCDTPIAHCDLKPSNVLLDKDMTA 539 (717)
Q Consensus 460 ~~~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~dlkp~NIll~~~~~~ 539 (717)
......++||||++ ++|.+++.. ..+++..+..++.||+.||+|||+. ||+||||||+||+++.++.+
T Consensus 100 ~~~~~~~iv~e~~~-~~L~~~l~~--------~~~~~~~~~~i~~qi~~aL~~LH~~---~ivH~Dikp~NIl~~~~~~~ 167 (364)
T 3qyz_A 100 EQMKDVYIVQDLME-TDLYKLLKT--------QHLSNDHICYFLYQILRGLKYIHSA---NVLHRDLKPSNLLLNTTCDL 167 (364)
T ss_dssp TTCCCEEEEEECCS-EEHHHHHHH--------CCCCHHHHHHHHHHHHHHHHHHHHT---TEECCCCCGGGEEECTTCCE
T ss_pred cccceEEEEEcccC-cCHHHHHHh--------CCCCHHHHHHHHHHHHHHHHHHHHC---CeecCCCChHhEEECCCCCE
Confidence 55567999999996 599998863 3589999999999999999999998 99999999999999999999
Q ss_pred EEeeeccchhcccccCCCCCCcceeecccccccccCCCcc-CC-CCCcccchhhHHHHHHHHHhCCCCCCCCCCCchhhh
Q 005045 540 HVGDFGLAKFLFEISDNPSKNQTVSIGLKGSIGYIPPEHM-NG-QVSILGDIYSYGILLLEMFTGKRPTGDMFKDDFSIH 617 (717)
Q Consensus 540 kl~Dfg~~~~~~~~~~~~~~~~~~~~~~~~~~~y~aPE~~-~~-~~~~~sDvwslG~vl~elltg~~p~~~~~~~~~~~~ 617 (717)
||+|||.+.......... .......||+.|+|||++ .+ .++.++|||||||++|+|++|..||......+....
T Consensus 168 kl~Dfg~a~~~~~~~~~~----~~~~~~~gt~~y~aPE~~~~~~~~~~~~DiwslG~il~ell~g~~pf~~~~~~~~~~~ 243 (364)
T 3qyz_A 168 KICDFGLARVADPDHDHT----GFLTEYVATRWYRAPEIMLNSKGYTKSIDIWSVGCILAEMLSNRPIFPGKHYLDQLNH 243 (364)
T ss_dssp EECCCTTCEECCGGGCBC----CTTCCCCSCGGGCCHHHHHTBCSCSTHHHHHHHHHHHHHHHHSSCSSCCSSGGGHHHH
T ss_pred EEEeCcceEecCCCCCcc----ccccccccccCCCCCHHhcCCCCCCcchhHHHHHHHHHHHHHCCCCCCCCChHHHHHH
Confidence 999999998653221111 112335689999999985 33 379999999999999999999999976543322111
Q ss_pred HHHHhc-CChh-hhhhcCCCCCCCCCCcHHHHHHHHHHHHHHhhhhhhhcchhhhHHHHHHHHHHhhccCCCCcCCCCCH
Q 005045 618 MFVSMA-LPDH-VMDILDPSMPLDEENDEEQIEEVIEEKEMMIHIDLEVNTKNKLEECFVSVLRIGLMCSTTSPRERIAM 695 (717)
Q Consensus 618 ~~~~~~-~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~cl~~~p~~Rps~ 695 (717)
...... .+.. +....+. ...... .................++..+.+++.+||++||++|||+
T Consensus 244 i~~~~~~~~~~~~~~~~~~-----------~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~R~t~ 308 (364)
T 3qyz_A 244 ILGILGSPSQEDLNCIINL-----------KARNYL----LSLPHKNKVPWNRLFPNADSKALDLLDKMLTFNPHKRIEV 308 (364)
T ss_dssp HHHHHCSCCHHHHHTCCCH-----------HHHHHH----HTSCCCCCCCHHHHCTTSCHHHHHHHHHHTCSSTTTSCCH
T ss_pred HHHHhCCCCHHHHHHhhhh-----------hHHHHH----HhcCCccCCCHHHhCCCCCHHHHHHHHHHcCCChhhCCCH
Confidence 100000 0000 1100000 000000 0000000000001112235668899999999999999999
Q ss_pred HHHHH
Q 005045 696 NVVVN 700 (717)
Q Consensus 696 ~eil~ 700 (717)
.|+++
T Consensus 309 ~e~l~ 313 (364)
T 3qyz_A 309 EQALA 313 (364)
T ss_dssp HHHHT
T ss_pred HHHhc
Confidence 99986
No 223
>3c4z_A Rhodopsin kinase; Ser/Thr kinase, RGS homology domain, G protein coupled recep kinase, GRK, GRK1, P-loop, autophosphoryl ADP, ATP-binding; HET: ADP; 1.84A {Bos taurus} PDB: 3c4x_A* 3c4y_A 3c4w_A* 3c50_A* 3c51_A* 3qc9_A* 2i94_B
Probab=100.00 E-value=2.1e-37 Score=340.48 Aligned_cols=206 Identities=27% Similarity=0.389 Sum_probs=175.3
Q ss_pred ccccccccccccCcccccceEEEEeC-CCchhhhHHhHhhh---hhHHHHHHHHHHHHhcCCCCceeEEEEeeccccCCC
Q 005045 386 KSTDNFSKENLIGTGSFGSVYKGTLG-DGTIVAIKVLKLQQ---QGALKSFIDECNALKSTRHRNILRVITACSSVDLEG 461 (717)
Q Consensus 386 ~~~~~y~~~~~ig~g~~g~v~~~~~~-~~~~vavK~~~~~~---~~~~~~~~~e~~~l~~l~h~ni~~~~~~~~~~~~~~ 461 (717)
...++|++.+.||+|+||.||+|+++ +|+.||+|++.... ......+..|++++++++||||+++++++ ..
T Consensus 182 ~~~~~f~~~~~LG~G~fG~Vy~a~~~~tg~~vAiK~l~k~~~~~~~~~~~~~~E~~iL~~l~hp~Iv~l~~~~-----~~ 256 (543)
T 3c4z_A 182 MGEDWFLDFRVLGRGGFGEVFACQMKATGKLYACKKLNKKRLKKRKGYQGAMVEKKILAKVHSRFIVSLAYAF-----ET 256 (543)
T ss_dssp CCGGGEEEEEEEEECSSSEEEEEEETTTCCEEEEEEEEHHHHHHTTCHHHHHHHHHHHHHCCCTTBCCEEEEE-----EC
T ss_pred CChhheEEEEEEeeCCCeEEEEEEECCCCcEEEEEEEEhHHhhhhHHHHHHHHHHHHHHhcCCCCEeeEEEEE-----ee
Confidence 34678999999999999999999975 79999999986542 23356788999999999999999999984 44
Q ss_pred CceEEEEEecCCCCChhhhccCCCCCcccccccCHHHHHHHHHHHHHHHHHHHhcCCCCeeecCCCCCCEEeCCCCceEE
Q 005045 462 NDFKALVFEFMSNGNLDQWLHPSPAEHYQFKKLSVIQRLNIAIDVASALDYLHHHCDTPIAHCDLKPSNVLLDKDMTAHV 541 (717)
Q Consensus 462 ~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~dlkp~NIll~~~~~~kl 541 (717)
.+..|+||||++|++|.+++..... ....+++..++.++.||+.||+|||+. +|+||||||+||+++.+|.+||
T Consensus 257 ~~~l~lVmE~~~gg~L~~~l~~~~~---~~~~l~e~~~~~~~~qi~~aL~~LH~~---gIvHrDLKP~NILl~~~g~vkL 330 (543)
T 3c4z_A 257 KTDLCLVMTIMNGGDIRYHIYNVDE---DNPGFQEPRAIFYTAQIVSGLEHLHQR---NIIYRDLKPENVLLDDDGNVRI 330 (543)
T ss_dssp SSEEEEEECCCTTCBHHHHHHTSST---TSCSCCHHHHHHHHHHHHHHHHHHHHT---TEECCCCCGGGEEECTTSCEEE
T ss_pred CCEEEEEEEeccCCCHHHHHHHhhc---ccccccHHHHHHHHHHHHHHHHHHHHc---CCcccCCChHHEEEeCCCCEEE
Confidence 5689999999999999999875421 124689999999999999999999998 9999999999999999999999
Q ss_pred eeeccchhcccccCCCCCCcceeecccccccccCCCccCC-CCCcccchhhHHHHHHHHHhCCCCCCCC
Q 005045 542 GDFGLAKFLFEISDNPSKNQTVSIGLKGSIGYIPPEHMNG-QVSILGDIYSYGILLLEMFTGKRPTGDM 609 (717)
Q Consensus 542 ~Dfg~~~~~~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~-~~~~~sDvwslG~vl~elltg~~p~~~~ 609 (717)
+|||++...... ........||+.|+|||++.+ .++.++|||||||++|||++|..||...
T Consensus 331 ~DFGla~~~~~~-------~~~~~~~~GT~~Y~APE~l~~~~~~~~~DiwSlGvilyelltG~~PF~~~ 392 (543)
T 3c4z_A 331 SDLGLAVELKAG-------QTKTKGYAGTPGFMAPELLLGEEYDFSVDYFALGVTLYEMIAARGPFRAR 392 (543)
T ss_dssp CCCTTCEECCTT-------CCCBCCCCSCTTTSCHHHHTTCCBCTHHHHHHHHHHHHHHHHSSCSSCCT
T ss_pred eecceeeeccCC-------CcccccccCCccccChhhhcCCCCChHHhcCcchHHHHHHHhCCCCCCCC
Confidence 999999865211 112233579999999999766 4899999999999999999999999764
No 224
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=100.00 E-value=6.6e-36 Score=315.15 Aligned_cols=302 Identities=24% Similarity=0.319 Sum_probs=264.9
Q ss_pred eecEEEcCCCcCcCCCCcCCcCCCCCCEEECCCCcccccCCcCCCCCCCCCEEEccCccccccCCccccCCCCCCEEecc
Q 005045 11 MTQDLNLTYNYLSGKIPTNLSHCTELRSFEASVNDFVGQIPNQLSSLTKLEIIGLGGSNLTGNVPAWIGNFSSLKALSLA 90 (717)
Q Consensus 11 ~~~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~ 90 (717)
.+++|++++|.+.. +|. +..+++|++|++++|.+++ ++. |.++++|++|++++|.++ .+| .+..+++|++|+|+
T Consensus 45 ~L~~L~l~~~~i~~-~~~-~~~~~~L~~L~l~~n~i~~-~~~-~~~l~~L~~L~L~~n~i~-~~~-~~~~l~~L~~L~l~ 118 (347)
T 4fmz_A 45 SITKLVVAGEKVAS-IQG-IEYLTNLEYLNLNGNQITD-ISP-LSNLVKLTNLYIGTNKIT-DIS-ALQNLTNLRELYLN 118 (347)
T ss_dssp TCSEEECCSSCCCC-CTT-GGGCTTCCEEECCSSCCCC-CGG-GTTCTTCCEEECCSSCCC-CCG-GGTTCTTCSEEECT
T ss_pred cccEEEEeCCcccc-chh-hhhcCCccEEEccCCcccc-chh-hhcCCcCCEEEccCCccc-Cch-HHcCCCcCCEEECc
Confidence 78999999999984 554 9999999999999999994 454 999999999999999999 455 59999999999999
Q ss_pred CCcCcccCChhhhccCCCCeEeccCCCCCCCCCccccCCCCccEEEcccCcccccCCcccccCCCCcceeeccccccccc
Q 005045 91 WNNLRGSIPNELGQLSGLGFFTLYGNFISGIIPSSIYNISSIYYFSVTQNQLHGQLPTDVGLTLPNLKIFAGAVNYFTGS 170 (717)
Q Consensus 91 ~n~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~~l~~~~~~~l~~L~~L~l~~n~l~~~ 170 (717)
+|.+++. +. +..+++|++|++++|..... +..+..+++|++|++++|.+. .++. +..+++|+.|++++|.+...
T Consensus 119 ~n~i~~~-~~-~~~l~~L~~L~l~~n~~~~~-~~~~~~l~~L~~L~l~~~~~~-~~~~--~~~l~~L~~L~l~~n~l~~~ 192 (347)
T 4fmz_A 119 EDNISDI-SP-LANLTKMYSLNLGANHNLSD-LSPLSNMTGLNYLTVTESKVK-DVTP--IANLTDLYSLSLNYNQIEDI 192 (347)
T ss_dssp TSCCCCC-GG-GTTCTTCCEEECTTCTTCCC-CGGGTTCTTCCEEECCSSCCC-CCGG--GGGCTTCSEEECTTSCCCCC
T ss_pred CCcccCc-hh-hccCCceeEEECCCCCCccc-ccchhhCCCCcEEEecCCCcC-Cchh--hccCCCCCEEEccCCccccc
Confidence 9999944 43 99999999999999976643 455999999999999999998 5554 56899999999999999865
Q ss_pred CCccCCCCCCCCEEeccCccccccCCCCccCCCCCCeeeccccccCCcccCchhhhhhhccCCCCCEEEeecCcccCcCc
Q 005045 171 IPVSLSNASNLQVLDFAENGLTGTIPGNFGSLKDLVRLNFDQNELGSREIGDLNFLKFLANCTSLEVLGLARNSFGGEMP 250 (717)
Q Consensus 171 ~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~~~p 250 (717)
.+ +..+++|+.|++++|.+++..+ +..+++|++|++++|.++..+ + +..+++|++|++++|.+++ ++
T Consensus 193 ~~--~~~l~~L~~L~l~~n~l~~~~~--~~~~~~L~~L~l~~n~l~~~~------~--~~~l~~L~~L~l~~n~l~~-~~ 259 (347)
T 4fmz_A 193 SP--LASLTSLHYFTAYVNQITDITP--VANMTRLNSLKIGNNKITDLS------P--LANLSQLTWLEIGTNQISD-IN 259 (347)
T ss_dssp GG--GGGCTTCCEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCCCG------G--GTTCTTCCEEECCSSCCCC-CG
T ss_pred cc--ccCCCccceeecccCCCCCCch--hhcCCcCCEEEccCCccCCCc------c--hhcCCCCCEEECCCCccCC-Ch
Confidence 44 8899999999999999995544 889999999999999999875 2 8899999999999999994 43
Q ss_pred hhhhhccccccEEecCCCccCCCCCccccCCCCCCEEEccCCcCccccchhhhcCCCCCeEEcccCcCCCCCCccccccc
Q 005045 251 ISIANLSTHLRRLTMGENLMHGNIPVGIGNLVNLNLLGLEGNNLSGSVPEVIGRLNKLEGLGLNVNKFSGLIPSSLGNLT 330 (717)
Q Consensus 251 ~~~~~~~~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~ 330 (717)
.+..+ ++|++|++++|.+++. ..+..+++|+.|++++|++++..+..+..+++|++|++++|++++..| +..++
T Consensus 260 -~~~~l-~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~--~~~l~ 333 (347)
T 4fmz_A 260 -AVKDL-TKLKMLNVGSNQISDI--SVLNNLSQLNSLFLNNNQLGNEDMEVIGGLTNLTTLFLSQNHITDIRP--LASLS 333 (347)
T ss_dssp -GGTTC-TTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCGGGHHHHHTCTTCSEEECCSSSCCCCGG--GGGCT
T ss_pred -hHhcC-CCcCEEEccCCccCCC--hhhcCCCCCCEEECcCCcCCCcChhHhhccccCCEEEccCCccccccC--hhhhh
Confidence 46666 5999999999999864 568999999999999999998899999999999999999999998766 88999
Q ss_pred ccceeeccccccc
Q 005045 331 ILTRLWMEENRLE 343 (717)
Q Consensus 331 ~L~~L~L~~N~l~ 343 (717)
+|+.|++++|.|+
T Consensus 334 ~L~~L~l~~N~i~ 346 (347)
T 4fmz_A 334 KMDSADFANQVIK 346 (347)
T ss_dssp TCSEESSSCC---
T ss_pred ccceeehhhhccc
Confidence 9999999999986
No 225
>2h8h_A Proto-oncogene tyrosine-protein kinase SRC; SRC kinase, transferase; HET: PTR H8H; 2.20A {Homo sapiens} SCOP: b.34.2.1 d.93.1.1 d.144.1.7
Probab=100.00 E-value=1.1e-38 Score=354.52 Aligned_cols=264 Identities=28% Similarity=0.441 Sum_probs=209.7
Q ss_pred CCcccccccccccccccccCcccccceEEEEeCCCchhhhHHhHhhhhhHHHHHHHHHHHHhcCCCCceeEEEEeecccc
Q 005045 379 MSYSDISKSTDNFSKENLIGTGSFGSVYKGTLGDGTIVAIKVLKLQQQGALKSFIDECNALKSTRHRNILRVITACSSVD 458 (717)
Q Consensus 379 ~s~~~~~~~~~~y~~~~~ig~g~~g~v~~~~~~~~~~vavK~~~~~~~~~~~~~~~e~~~l~~l~h~ni~~~~~~~~~~~ 458 (717)
+....+....++|++.++||+|+||.||+|.+..++.||||++..... ..+.+.+|++++++++||||+++++++..
T Consensus 257 ~~~~~~~i~~~~~~~~~~lG~G~fg~Vy~~~~~~~~~vavK~~~~~~~-~~~~~~~E~~~l~~l~hpniv~~~~~~~~-- 333 (535)
T 2h8h_A 257 LAKDAWEIPRESLRLEVKLGQGCFGEVWMGTWNGTTRVAIKTLKPGTM-SPEAFLQEAQVMKKLRHEKLVQLYAVVSE-- 333 (535)
T ss_dssp SSTTCSBCCGGGEEEEEEEEECSSEEEEEEEETTTEEEEEEEECTTSS-CHHHHHHHHHHHHHCCCTTBCCEEEEECS--
T ss_pred cCccceecchhhhhhheecccCCCeEEEEEEECCCceEEEEEeCCCCC-CHHHHHHHHHHHHhCCCCCEeeEEEEEee--
Confidence 445667778899999999999999999999988778899999875432 24678999999999999999999998632
Q ss_pred CCCCceEEEEEecCCCCChhhhccCCCCCcccccccCHHHHHHHHHHHHHHHHHHHhcCCCCeeecCCCCCCEEeCCCCc
Q 005045 459 LEGNDFKALVFEFMSNGNLDQWLHPSPAEHYQFKKLSVIQRLNIAIDVASALDYLHHHCDTPIAHCDLKPSNVLLDKDMT 538 (717)
Q Consensus 459 ~~~~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~dlkp~NIll~~~~~ 538 (717)
+..++||||+++++|.+++.... ...+++..+..++.||+.||+|||+. +|+||||||+||+++.++.
T Consensus 334 ----~~~~lv~e~~~~gsL~~~l~~~~-----~~~l~~~~~~~i~~qi~~~L~~LH~~---~ivHrDlkp~NIll~~~~~ 401 (535)
T 2h8h_A 334 ----EPIYIVTEYMSKGSLLDFLKGET-----GKYLRLPQLVDMAAQIASGMAYVERM---NYVHRDLRAANILVGENLV 401 (535)
T ss_dssp ----SSCEEEECCCTTEEHHHHHSHHH-----HTTCCHHHHHHHHHHHHHHHHHHHHT---TCCCSCCSGGGEEECGGGC
T ss_pred ----ccceEeeehhcCCcHHHHHhhcC-----CCCCCHHHHHHHHHHHHHHHHHHHhC---CeeCCCCCHhhEEEcCCCc
Confidence 46899999999999999997431 14589999999999999999999997 9999999999999999999
Q ss_pred eEEeeeccchhcccccCCCCCCcceeecccccccccCCCcc-CCCCCcccchhhHHHHHHHHHh-CCCCCCCCCCCchhh
Q 005045 539 AHVGDFGLAKFLFEISDNPSKNQTVSIGLKGSIGYIPPEHM-NGQVSILGDIYSYGILLLEMFT-GKRPTGDMFKDDFSI 616 (717)
Q Consensus 539 ~kl~Dfg~~~~~~~~~~~~~~~~~~~~~~~~~~~y~aPE~~-~~~~~~~sDvwslG~vl~ellt-g~~p~~~~~~~~~~~ 616 (717)
+||+|||+++...... ........++..|+|||++ .+.++.++|||||||++|||++ |..||......+ .
T Consensus 402 ~kl~DFG~a~~~~~~~------~~~~~~~~~~~~y~aPE~~~~~~~~~~sDvwSlGv~l~el~t~g~~P~~~~~~~~--~ 473 (535)
T 2h8h_A 402 CKVADFGLARLIEDNE------YTARQGAKFPIKWTAPEAALYGRFTIKSDVWSFGILLTELTTKGRVPYPGMVNRE--V 473 (535)
T ss_dssp EEECCTTSTTTCCCHH------HHTTCSTTSCGGGSCHHHHHHCCCCHHHHHHHHHHHHHHHTTTTCCSSTTCCHHH--H
T ss_pred EEEcccccceecCCCc------eecccCCcCcccccCHHHhccCCCCchhhHHHHHHHHHHHHhCCCCCCCCCCHHH--H
Confidence 9999999998652110 1111233467789999995 4568999999999999999999 999997642211 1
Q ss_pred hHHHHhcCChhhhhhcCCCCCCCCCCcHHHHHHHHHHHHHHhhhhhhhcchhhhHHHHHHHHHHhhccCCCCcCCCCCHH
Q 005045 617 HMFVSMALPDHVMDILDPSMPLDEENDEEQIEEVIEEKEMMIHIDLEVNTKNKLEECFVSVLRIGLMCSTTSPRERIAMN 696 (717)
Q Consensus 617 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~cl~~~p~~Rps~~ 696 (717)
...+... . .+ ..+..++..+.+++.+||+.+|++|||++
T Consensus 474 ~~~i~~~--------~--~~-------------------------------~~~~~~~~~l~~li~~cl~~dP~~RPt~~ 512 (535)
T 2h8h_A 474 LDQVERG--------Y--RM-------------------------------PCPPECPESLHDLMCQCWRKEPEERPTFE 512 (535)
T ss_dssp HHHHHTT--------C--CC-------------------------------CCCTTCCHHHHHHHHHHTCSSGGGSCCHH
T ss_pred HHHHHcC--------C--CC-------------------------------CCCCCCCHHHHHHHHHHcCCChhHCcCHH
Confidence 1111000 0 00 01123466788999999999999999999
Q ss_pred HHHHHHHHHH
Q 005045 697 VVVNNLKTIR 706 (717)
Q Consensus 697 eil~~l~~i~ 706 (717)
+|++.|+.+.
T Consensus 513 ~l~~~L~~~~ 522 (535)
T 2h8h_A 513 YLQAFLEDYF 522 (535)
T ss_dssp HHHHHHHTSS
T ss_pred HHHHHHHHHh
Confidence 9999998764
No 226
>2owb_A Serine/threonine-protein kinase PLK1; catalytic domain, POLO-like kinase1, transfera; HET: 626; 2.10A {Homo sapiens} PDB: 2ou7_A* 3fc2_A* 3thb_A*
Probab=100.00 E-value=7.9e-38 Score=327.78 Aligned_cols=250 Identities=20% Similarity=0.290 Sum_probs=200.1
Q ss_pred ccccccccccccCcccccceEEEEeC-CCchhhhHHhHhh---hhhHHHHHHHHHHHHhcCCCCceeEEEEeeccccCCC
Q 005045 386 KSTDNFSKENLIGTGSFGSVYKGTLG-DGTIVAIKVLKLQ---QQGALKSFIDECNALKSTRHRNILRVITACSSVDLEG 461 (717)
Q Consensus 386 ~~~~~y~~~~~ig~g~~g~v~~~~~~-~~~~vavK~~~~~---~~~~~~~~~~e~~~l~~l~h~ni~~~~~~~~~~~~~~ 461 (717)
...++|.+.+.||+|+||.||+|.+. +++.||+|++... .....+.+.+|+.+++.++||||+++++++. +
T Consensus 38 ~~~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~~a~K~~~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~-----~ 112 (335)
T 2owb_A 38 RSRRRYVRGRFLGKGGFAKCFEISDADTKEVFAGKIVPKSLLLKPHQREKMSMEISIHRSLAHQHVVGFHGFFE-----D 112 (335)
T ss_dssp TTTEEEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEEGGGCCSHHHHHHHHHHHHHHHTCCCTTBCCEEEEEE-----C
T ss_pred ccCCceEEEEEEeeCCCeEEEEEEECCCCCEEEEEEechhhhcCHHHHHHHHHHHHHHHhCCCCCCCeEEEEEe-----c
Confidence 34679999999999999999999965 6888999988644 2345677889999999999999999999954 4
Q ss_pred CceEEEEEecCCCCChhhhccCCCCCcccccccCHHHHHHHHHHHHHHHHHHHhcCCCCeeecCCCCCCEEeCCCCceEE
Q 005045 462 NDFKALVFEFMSNGNLDQWLHPSPAEHYQFKKLSVIQRLNIAIDVASALDYLHHHCDTPIAHCDLKPSNVLLDKDMTAHV 541 (717)
Q Consensus 462 ~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~dlkp~NIll~~~~~~kl 541 (717)
.+..++||||+++++|.+++... ..+++..+..++.||+.||+|||+. +|+||||||+||+++.++.+||
T Consensus 113 ~~~~~lv~e~~~~~~L~~~~~~~-------~~l~~~~~~~i~~qi~~aL~~LH~~---~ivH~dlkp~NIl~~~~~~~kl 182 (335)
T 2owb_A 113 NDFVFVVLELCRRRSLLELHKRR-------KALTEPEARYYLRQIVLGCQYLHRN---RVIHRDLKLGNLFLNEDLEVKI 182 (335)
T ss_dssp SSEEEEEECCCTTCBHHHHHHHH-------CSCCHHHHHHHHHHHHHHHHHHHHT---TEECSCCCGGGEEECTTCCEEE
T ss_pred CCeEEEEEecCCCCCHHHHHhcc-------CCCCHHHHHHHHHHHHHHHHHHHHC---CCEecCCCchhEEEcCCCCEEE
Confidence 55899999999999999988643 5689999999999999999999998 9999999999999999999999
Q ss_pred eeeccchhcccccCCCCCCcceeecccccccccCCCccCC-CCCcccchhhHHHHHHHHHhCCCCCCCCCCCchhhhHHH
Q 005045 542 GDFGLAKFLFEISDNPSKNQTVSIGLKGSIGYIPPEHMNG-QVSILGDIYSYGILLLEMFTGKRPTGDMFKDDFSIHMFV 620 (717)
Q Consensus 542 ~Dfg~~~~~~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~-~~~~~sDvwslG~vl~elltg~~p~~~~~~~~~~~~~~~ 620 (717)
+|||.+...... ........|+..|+|||++.+ .++.++|||||||++|+|++|..||......+. . ...
T Consensus 183 ~Dfg~~~~~~~~-------~~~~~~~~gt~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~g~~pf~~~~~~~~-~-~~~ 253 (335)
T 2owb_A 183 GDFGLATKVEYD-------GERKKVLCGTPNYIAPEVLSKKGHSFEVDVWSIGCIMYTLLVGKPPFETSCLKET-Y-LRI 253 (335)
T ss_dssp CCCTTCEECCST-------TCCBCCCCSCCSSCCHHHHHTSCBCTHHHHHHHHHHHHHHHHSSCTTCCSSHHHH-H-HHH
T ss_pred eeccCceecccC-------cccccccCCCccccCHHHhccCCCCchhhHHHHHHHHHHHHHCcCCCCCCCHHHH-H-HHH
Confidence 999999865211 111233568999999999655 478999999999999999999999965421110 0 000
Q ss_pred HhcCChhhhhhcCCCCCCCCCCcHHHHHHHHHHHHHHhhhhhhhcchhhhHHHHHHHHHHhhccCCCCcCCCCCHHHHHH
Q 005045 621 SMALPDHVMDILDPSMPLDEENDEEQIEEVIEEKEMMIHIDLEVNTKNKLEECFVSVLRIGLMCSTTSPRERIAMNVVVN 700 (717)
Q Consensus 621 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~cl~~~p~~Rps~~eil~ 700 (717)
. ..... .+..++..+.+++.+||+.+|++|||++|+++
T Consensus 254 ~-----------~~~~~-------------------------------~~~~~~~~~~~li~~~l~~dp~~Rps~~ell~ 291 (335)
T 2owb_A 254 K-----------KNEYS-------------------------------IPKHINPVAASLIQKMLQTDPTARPTINELLN 291 (335)
T ss_dssp H-----------HTCCC-------------------------------CCTTSCHHHHHHHHHHTCSSGGGSCCGGGGGG
T ss_pred h-----------cCCCC-------------------------------CCccCCHHHHHHHHHHccCChhHCcCHHHHhc
Confidence 0 00000 00112445788999999999999999999986
Q ss_pred H
Q 005045 701 N 701 (717)
Q Consensus 701 ~ 701 (717)
.
T Consensus 292 ~ 292 (335)
T 2owb_A 292 D 292 (335)
T ss_dssp S
T ss_pred C
Confidence 3
No 227
>1u46_A ACK-1, activated CDC42 kinase 1; tyrosine kinase, transferase; 2.00A {Homo sapiens} SCOP: d.144.1.7 PDB: 1u4d_A* 1u54_A* 3eqr_A* 3eqp_B*
Probab=100.00 E-value=3.8e-38 Score=323.67 Aligned_cols=263 Identities=26% Similarity=0.375 Sum_probs=194.1
Q ss_pred ccccccccccccCcccccceEEEEeC--CCc--hhhhHHhHhh---hhhHHHHHHHHHHHHhcCCCCceeEEEEeecccc
Q 005045 386 KSTDNFSKENLIGTGSFGSVYKGTLG--DGT--IVAIKVLKLQ---QQGALKSFIDECNALKSTRHRNILRVITACSSVD 458 (717)
Q Consensus 386 ~~~~~y~~~~~ig~g~~g~v~~~~~~--~~~--~vavK~~~~~---~~~~~~~~~~e~~~l~~l~h~ni~~~~~~~~~~~ 458 (717)
...++|++.+.||+|++|.||+|.+. +++ .||+|++... .....+.+.+|++++++++||||+++++++..
T Consensus 15 ~~~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~-- 92 (291)
T 1u46_A 15 IGEKDLRLLEKLGDGSFGVVRRGEWDAPSGKTVSVAVKCLKPDVLSQPEAMDDFIREVNAMHSLDHRNLIRLYGVVLT-- 92 (291)
T ss_dssp CCGGGEEEEEECC----CCCEEEEEECTTSCEEEEEEEC--------CHHHHHHHHHHHHHHHCCCTTBCCEEEEECS--
T ss_pred cchhHeeeeeeecCCCceeEEEEEeccCCCceeEEEEEEEccCccCCHHHHHHHHHHHHHHHhCCCCCcccEEEEEcc--
Confidence 34678999999999999999999843 333 5899998754 23456788999999999999999999998642
Q ss_pred CCCCceEEEEEecCCCCChhhhccCCCCCcccccccCHHHHHHHHHHHHHHHHHHHhcCCCCeeecCCCCCCEEeCCCCc
Q 005045 459 LEGNDFKALVFEFMSNGNLDQWLHPSPAEHYQFKKLSVIQRLNIAIDVASALDYLHHHCDTPIAHCDLKPSNVLLDKDMT 538 (717)
Q Consensus 459 ~~~~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~dlkp~NIll~~~~~ 538 (717)
. ..++||||+++++|.+++.... ..+++..+..++.||+.||+|||+. +++||||||+||+++.++.
T Consensus 93 ---~-~~~~v~e~~~~~~L~~~l~~~~------~~~~~~~~~~~~~~i~~~l~~lH~~---~i~H~dikp~Nili~~~~~ 159 (291)
T 1u46_A 93 ---P-PMKMVTELAPLGSLLDRLRKHQ------GHFLLGTLSRYAVQVAEGMGYLESK---RFIHRDLAARNLLLATRDL 159 (291)
T ss_dssp ---S-SCEEEEECCTTCBHHHHHHHHG------GGSCHHHHHHHHHHHHHHHHHHHHT---TEECSCCCGGGEEEEETTE
T ss_pred ---C-CceeeEecccCCCHHHHHHhcc------CCcCHHHHHHHHHHHHHHHHHHHhC---CcccCCCchheEEEcCCCC
Confidence 2 3789999999999999987432 4689999999999999999999998 9999999999999999999
Q ss_pred eEEeeeccchhcccccCCCCCCcceeecccccccccCCCccCC-CCCcccchhhHHHHHHHHHh-CCCCCCCCCCCchhh
Q 005045 539 AHVGDFGLAKFLFEISDNPSKNQTVSIGLKGSIGYIPPEHMNG-QVSILGDIYSYGILLLEMFT-GKRPTGDMFKDDFSI 616 (717)
Q Consensus 539 ~kl~Dfg~~~~~~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~-~~~~~sDvwslG~vl~ellt-g~~p~~~~~~~~~~~ 616 (717)
+||+|||.+....... ..........++..|+|||++.+ .++.++|||||||++|+|++ |..||....... .
T Consensus 160 ~kl~Dfg~~~~~~~~~----~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~~g~~p~~~~~~~~--~ 233 (291)
T 1u46_A 160 VKIGDFGLMRALPQND----DHYVMQEHRKVPFAWCAPESLKTRTFSHASDTWMFGVTLWEMFTYGQEPWIGLNGSQ--I 233 (291)
T ss_dssp EEECCCTTCEECCC-C----CEEEC-----CCGGGCCHHHHHHCEEEHHHHHHHHHHHHHHHHTTSCCTTTTCCHHH--H
T ss_pred EEEccccccccccccc----cchhhhccCCCCceeeCchhhcCCCCCchhhHHHHHHHHHHHHhCCCCCcccCCHHH--H
Confidence 9999999988652111 11112233457778999999654 47899999999999999999 999997542211 1
Q ss_pred hHHHHhcCChhhhhhcCCCCCCCCCCcHHHHHHHHHHHHHHhhhhhhhcchhhhHHHHHHHHHHhhccCCCCcCCCCCHH
Q 005045 617 HMFVSMALPDHVMDILDPSMPLDEENDEEQIEEVIEEKEMMIHIDLEVNTKNKLEECFVSVLRIGLMCSTTSPRERIAMN 696 (717)
Q Consensus 617 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~cl~~~p~~Rps~~ 696 (717)
.... ....... ..+..++..+.+++.+||+.+|++|||+.
T Consensus 234 ~~~~-----------~~~~~~~-----------------------------~~~~~~~~~l~~li~~~l~~~p~~Rps~~ 273 (291)
T 1u46_A 234 LHKI-----------DKEGERL-----------------------------PRPEDCPQDIYNVMVQCWAHKPEDRPTFV 273 (291)
T ss_dssp HHHH-----------HTSCCCC-----------------------------CCCTTCCHHHHHHHHHHTCSSGGGSCCHH
T ss_pred HHHH-----------HccCCCC-----------------------------CCCcCcCHHHHHHHHHHccCCcccCcCHH
Confidence 1110 0000000 01112356788999999999999999999
Q ss_pred HHHHHHHHHHHHH
Q 005045 697 VVVNNLKTIRNCF 709 (717)
Q Consensus 697 eil~~l~~i~~~~ 709 (717)
|+++.|++++...
T Consensus 274 ~l~~~l~~~~~~~ 286 (291)
T 1u46_A 274 ALRDFLLEAQPTD 286 (291)
T ss_dssp HHHHHHHHHC---
T ss_pred HHHHHHHHhCccc
Confidence 9999999887544
No 228
>2y7j_A Phosphorylase B kinase gamma catalytic chain, testis/liver isoform; transferase; HET: B49; 2.50A {Homo sapiens} PDB: 1h0t_A 1lp1_B 1q2n_A 2spz_A 3mzw_B* 1ss1_A 2jwd_A 1bdc_A 1bdd_A 1fc2_C* 2b87_A 2b88_A 1h0t_B 1lp1_A 2b87_B 2b89_A 3s1k_A
Probab=100.00 E-value=1.2e-37 Score=329.84 Aligned_cols=250 Identities=22% Similarity=0.364 Sum_probs=197.7
Q ss_pred ccccccccccCcccccceEEEEeC-CCchhhhHHhHhhh--------hhHHHHHHHHHHHHhcC-CCCceeEEEEeeccc
Q 005045 388 TDNFSKENLIGTGSFGSVYKGTLG-DGTIVAIKVLKLQQ--------QGALKSFIDECNALKST-RHRNILRVITACSSV 457 (717)
Q Consensus 388 ~~~y~~~~~ig~g~~g~v~~~~~~-~~~~vavK~~~~~~--------~~~~~~~~~e~~~l~~l-~h~ni~~~~~~~~~~ 457 (717)
.++|++.+.||+|++|.||+|.++ +|+.||||++.... ....+.+.+|+++++++ +||||+++++++.
T Consensus 93 ~~~y~~~~~lg~G~~g~Vy~a~~~~~g~~vavK~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~~hp~iv~~~~~~~-- 170 (365)
T 2y7j_A 93 YQKYDPKDVIGRGVSSVVRRCVHRATGHEFAVKIMEVTAERLSPEQLEEVREATRRETHILRQVAGHPHIITLIDSYE-- 170 (365)
T ss_dssp HHHEEEEEEEEECSSEEEEEEEETTTCCEEEEEEEETTSSCCCHHHHHHHHHHHHHHHHHHHHHTTCTTBCCEEEEEE--
T ss_pred hhhcccceEEecCCCEEEEEEEECCCCcEEEEEEEEccccccCHHHHHHHHHHHHHHHHHHHHhcCCCCEeEEEEEEe--
Confidence 468999999999999999999975 79999999875432 23356788999999999 8999999999854
Q ss_pred cCCCCceEEEEEecCCCCChhhhccCCCCCcccccccCHHHHHHHHHHHHHHHHHHHhcCCCCeeecCCCCCCEEeCCCC
Q 005045 458 DLEGNDFKALVFEFMSNGNLDQWLHPSPAEHYQFKKLSVIQRLNIAIDVASALDYLHHHCDTPIAHCDLKPSNVLLDKDM 537 (717)
Q Consensus 458 ~~~~~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~dlkp~NIll~~~~ 537 (717)
.....++||||+++++|.+++... ..+++..+..++.||+.||.|||+. ||+||||||+||+++.+|
T Consensus 171 ---~~~~~~lv~e~~~g~~L~~~l~~~-------~~l~~~~~~~i~~qi~~~L~~LH~~---gi~H~Dlkp~NIl~~~~~ 237 (365)
T 2y7j_A 171 ---SSSFMFLVFDLMRKGELFDYLTEK-------VALSEKETRSIMRSLLEAVSFLHAN---NIVHRDLKPENILLDDNM 237 (365)
T ss_dssp ---BSSEEEEEECCCTTCBHHHHHHHH-------SSCCHHHHHHHHHHHHHHHHHHHHT---TEECSCCSGGGEEECTTC
T ss_pred ---eCCEEEEEEEeCCCCcHHHHHHhc-------CCCCHHHHHHHHHHHHHHHHHHHhC---CeecCCCCHHHEEECCCC
Confidence 455899999999999999998743 5689999999999999999999998 999999999999999999
Q ss_pred ceEEeeeccchhcccccCCCCCCcceeecccccccccCCCccCC-------CCCcccchhhHHHHHHHHHhCCCCCCCCC
Q 005045 538 TAHVGDFGLAKFLFEISDNPSKNQTVSIGLKGSIGYIPPEHMNG-------QVSILGDIYSYGILLLEMFTGKRPTGDMF 610 (717)
Q Consensus 538 ~~kl~Dfg~~~~~~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~-------~~~~~sDvwslG~vl~elltg~~p~~~~~ 610 (717)
.+||+|||++...... .......||+.|+|||++.+ .++.++|||||||++|+|++|..||....
T Consensus 238 ~ikl~DfG~~~~~~~~--------~~~~~~~gt~~y~aPE~~~~~~~~~~~~~~~~~Di~slG~il~ell~g~~pf~~~~ 309 (365)
T 2y7j_A 238 QIRLSDFGFSCHLEPG--------EKLRELCGTPGYLAPEILKCSMDETHPGYGKEVDLWACGVILFTLLAGSPPFWHRR 309 (365)
T ss_dssp CEEECCCTTCEECCTT--------CCBCCCCSCGGGCCHHHHHHTTCTTSCCBCTTHHHHHHHHHHHHHHHSSCSSCCSS
T ss_pred CEEEEecCcccccCCC--------cccccCCCCCCccChhhccccccccCcCCCchhhHHhHHHHHHHHHHCCCCCCCCC
Confidence 9999999998765211 11234568999999999642 47899999999999999999999996532
Q ss_pred CCchhhhHHHHhcCChhhhhhcCCCCCCCCCCcHHHHHHHHHHHHHHhhhhhhhcchhhhHHHHHHHHHHhhccCCCCcC
Q 005045 611 KDDFSIHMFVSMALPDHVMDILDPSMPLDEENDEEQIEEVIEEKEMMIHIDLEVNTKNKLEECFVSVLRIGLMCSTTSPR 690 (717)
Q Consensus 611 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~cl~~~p~ 690 (717)
.. ....... ....... .+....++..+.+++.+||+.+|+
T Consensus 310 ~~--~~~~~i~-----------~~~~~~~---------------------------~~~~~~~~~~~~~li~~~L~~dP~ 349 (365)
T 2y7j_A 310 QI--LMLRMIM-----------EGQYQFS---------------------------SPEWDDRSSTVKDLISRLLQVDPE 349 (365)
T ss_dssp HH--HHHHHHH-----------HTCCCCC---------------------------HHHHSSSCHHHHHHHHHHSCSSTT
T ss_pred HH--HHHHHHH-----------hCCCCCC---------------------------CcccccCCHHHHHHHHHHcCCChh
Confidence 11 1111000 0000000 000112255688999999999999
Q ss_pred CCCCHHHHHH
Q 005045 691 ERIAMNVVVN 700 (717)
Q Consensus 691 ~Rps~~eil~ 700 (717)
+|||+.|+++
T Consensus 350 ~Rps~~ell~ 359 (365)
T 2y7j_A 350 ARLTAEQALQ 359 (365)
T ss_dssp TSCCHHHHHH
T ss_pred HCcCHHHHhc
Confidence 9999999986
No 229
>2ozo_A Tyrosine-protein kinase ZAP-70; inactive ZAP-70, tandem SH2, autoinhibition, ITAM, hydrogen bonding network, TCR signaling, transferase; HET: ANP; 2.60A {Homo sapiens}
Probab=100.00 E-value=9.9e-38 Score=351.73 Aligned_cols=262 Identities=25% Similarity=0.373 Sum_probs=202.3
Q ss_pred cccccccccc-ccCcccccceEEEEeC---CCchhhhHHhHhhh-hhHHHHHHHHHHHHhcCCCCceeEEEEeeccccCC
Q 005045 386 KSTDNFSKEN-LIGTGSFGSVYKGTLG---DGTIVAIKVLKLQQ-QGALKSFIDECNALKSTRHRNILRVITACSSVDLE 460 (717)
Q Consensus 386 ~~~~~y~~~~-~ig~g~~g~v~~~~~~---~~~~vavK~~~~~~-~~~~~~~~~e~~~l~~l~h~ni~~~~~~~~~~~~~ 460 (717)
...+++.+.. .||+|+||.||+|.++ ++..||||+++... ....+.+.+|++++++++||||+++++++..
T Consensus 332 ~~~~~~~~~~~~LG~G~fG~Vy~~~~~~~~~~~~vAvK~~~~~~~~~~~~~~~~E~~il~~l~hpniv~l~~~~~~---- 407 (613)
T 2ozo_A 332 LKRDNLLIADIELGCGNFGSVRQGVYRMRKKQIDVAIKVLKQGTEKADTEEMMREAQIMHQLDNPYIVRLIGVCQA---- 407 (613)
T ss_dssp CCTTSEEEEEEEEEECSSSEEEEEEEECSSCEEEEEEEECCCCCSSTTHHHHHHHHHHHTTCCCTTBCCEEEEEES----
T ss_pred ccccceeEcCcEEecCCCcEEEEEEEecCCCcEEEEEEEcCCCCChHHHHHHHHHHHHHHhCCCCCEeeEEEEecc----
Confidence 3445555555 7999999999999853 56679999987542 3346789999999999999999999999642
Q ss_pred CCceEEEEEecCCCCChhhhccCCCCCcccccccCHHHHHHHHHHHHHHHHHHHhcCCCCeeecCCCCCCEEeCCCCceE
Q 005045 461 GNDFKALVFEFMSNGNLDQWLHPSPAEHYQFKKLSVIQRLNIAIDVASALDYLHHHCDTPIAHCDLKPSNVLLDKDMTAH 540 (717)
Q Consensus 461 ~~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~dlkp~NIll~~~~~~k 540 (717)
+..++||||+++++|.+++.... ..+++..+..++.||+.||+|||+. +|+||||||+||+++.++.+|
T Consensus 408 --~~~~lv~E~~~~g~L~~~l~~~~------~~l~~~~~~~i~~qi~~~L~~LH~~---~iiHrDlkp~NILl~~~~~vk 476 (613)
T 2ozo_A 408 --EALMLVMEMAGGGPLHKFLVGKR------EEIPVSNVAELLHQVSMGMKYLEEK---NFVHRNLAARNVLLVNRHYAK 476 (613)
T ss_dssp --SSEEEEEECCTTCBHHHHHTTCT------TTSCHHHHHHHHHHHHHHHHHHHHT---TCCCSCCSGGGEEEEETTEEE
T ss_pred --CCeEEEEEeCCCCcHHHHHhhcc------CCCCHHHHHHHHHHHHHHHHHHHHC---CEEcCcCCHHHEEEcCCCcEE
Confidence 35899999999999999997542 5689999999999999999999997 999999999999999999999
Q ss_pred EeeeccchhcccccCCCCCCcceeecccccccccCCCccC-CCCCcccchhhHHHHHHHHHh-CCCCCCCCCCCchhhhH
Q 005045 541 VGDFGLAKFLFEISDNPSKNQTVSIGLKGSIGYIPPEHMN-GQVSILGDIYSYGILLLEMFT-GKRPTGDMFKDDFSIHM 618 (717)
Q Consensus 541 l~Dfg~~~~~~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~-~~~~~~sDvwslG~vl~ellt-g~~p~~~~~~~~~~~~~ 618 (717)
|+|||+++...... ..........++..|+|||++. +.++.++|||||||++|||++ |..||......+ ...
T Consensus 477 L~DFGla~~~~~~~----~~~~~~~~~~~~~~y~APE~~~~~~~~~~sDvwSlGv~l~ellt~G~~Pf~~~~~~~--~~~ 550 (613)
T 2ozo_A 477 ISDFGLSKALGADD----SYYTARSAGKWPLKWYAPECINFRKFSSRSDVWSYGVTMWEALSYGQKPYKKMKGPE--VMA 550 (613)
T ss_dssp ECCCSTTTTCC------------------CCTTSCHHHHHHCCCCHHHHHHHHHHHHHHHHTTSCCTTTTCCSHH--HHH
T ss_pred EeeccCcccccCCC----ceeeeccCCCCccceeCHhhhcCCCCCcHHHHHHHHHHHHHHHHCCCCCCCCCCHHH--HHH
Confidence 99999998652211 1111112234568899999965 568999999999999999998 999997653321 111
Q ss_pred HHHhcCChhhhhhcCCCCCCCCCCcHHHHHHHHHHHHHHhhhhhhhcchhhhHHHHHHHHHHhhccCCCCcCCCCCHHHH
Q 005045 619 FVSMALPDHVMDILDPSMPLDEENDEEQIEEVIEEKEMMIHIDLEVNTKNKLEECFVSVLRIGLMCSTTSPRERIAMNVV 698 (717)
Q Consensus 619 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~cl~~~p~~Rps~~ei 698 (717)
.+.... .+ ..+..++..+.+++.+||+.+|++|||+.+|
T Consensus 551 ~i~~~~----------~~-------------------------------~~p~~~~~~l~~li~~cl~~dP~~RPs~~~l 589 (613)
T 2ozo_A 551 FIEQGK----------RM-------------------------------ECPPECPPELYALMSDCWIYKWEDRPDFLTV 589 (613)
T ss_dssp HHHTTC----------CC-------------------------------CCCTTCCHHHHHHHHHTTCSSTTTSCCHHHH
T ss_pred HHHcCC----------CC-------------------------------CCCCcCCHHHHHHHHHHcCCChhHCcCHHHH
Confidence 111100 00 0112346778999999999999999999999
Q ss_pred HHHHHHHHHHH
Q 005045 699 VNNLKTIRNCF 709 (717)
Q Consensus 699 l~~l~~i~~~~ 709 (717)
++.|+.+....
T Consensus 590 ~~~L~~~~~~~ 600 (613)
T 2ozo_A 590 EQRMRACYYSL 600 (613)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHh
Confidence 99999987655
No 230
>2vwi_A Serine/threonine-protein kinase OSR1; STE kinase, hypertension, transferase; HET: ANP; 2.15A {Homo sapiens} PDB: 3dak_A*
Probab=100.00 E-value=7.2e-38 Score=323.58 Aligned_cols=272 Identities=24% Similarity=0.353 Sum_probs=183.5
Q ss_pred cccccccccccccCcccccceEEEEeC-CCchhhhHHhHhhh-hhHHHHHHHHHHHHhcCCCCceeEEEEeeccccCCCC
Q 005045 385 SKSTDNFSKENLIGTGSFGSVYKGTLG-DGTIVAIKVLKLQQ-QGALKSFIDECNALKSTRHRNILRVITACSSVDLEGN 462 (717)
Q Consensus 385 ~~~~~~y~~~~~ig~g~~g~v~~~~~~-~~~~vavK~~~~~~-~~~~~~~~~e~~~l~~l~h~ni~~~~~~~~~~~~~~~ 462 (717)
....++|++.+.||+|++|.||.|.+. +++.||+|.+.... ......+.+|++++++++||||+++++++. ..
T Consensus 11 ~i~~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~-----~~ 85 (303)
T 2vwi_A 11 SINRDDYELQEVIGSGATAVVQAAYCAPKKEKVAIKRINLEKCQTSMDELLKEIQAMSQCHHPNIVSYYTSFV-----VK 85 (303)
T ss_dssp --CCCCCEEEEECC---CCCEEEEEC----CEEEEECCC----------------CCCCCCCTTBCCEEEEEE-----SS
T ss_pred ccchhhhhhhheeccccceEEEEEEECCCCcEEEEEEEEhhhcchhHHHHHHHHHHHhhcCCCCEeeEEEEEe-----ec
Confidence 345679999999999999999999964 78999999986543 334567889999999999999999999854 34
Q ss_pred ceEEEEEecCCCCChhhhccCCCCC-cccccccCHHHHHHHHHHHHHHHHHHHhcCCCCeeecCCCCCCEEeCCCCceEE
Q 005045 463 DFKALVFEFMSNGNLDQWLHPSPAE-HYQFKKLSVIQRLNIAIDVASALDYLHHHCDTPIAHCDLKPSNVLLDKDMTAHV 541 (717)
Q Consensus 463 ~~~~lv~e~~~~~~L~~~l~~~~~~-~~~~~~~~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~dlkp~NIll~~~~~~kl 541 (717)
+..++||||+++++|.+++...... ......+++..+..++.||+.||+|||+. +++||||||+||+++.++.+||
T Consensus 86 ~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~i~~qi~~~l~~lH~~---~i~H~dl~p~Nil~~~~~~~kl 162 (303)
T 2vwi_A 86 DELWLVMKLLSGGSVLDIIKHIVAKGEHKSGVLDESTIATILREVLEGLEYLHKN---GQIHRDVKAGNILLGEDGSVQI 162 (303)
T ss_dssp SCEEEEEECCTTCBHHHHHHHHHHTTTTTTCSSCHHHHHHHHHHHHHHHHHHHHT---TCCCCCCSGGGEEECTTCCEEE
T ss_pred CCcEEEehhccCCchHHHHHHHhhccccccCCCCHHHHHHHHHHHHHHHHHHHhC---CCCCCCCChhhEEEcCCCCEEE
Confidence 5789999999999999998631000 00125689999999999999999999998 9999999999999999999999
Q ss_pred eeeccchhcccccCCCCCCcceeecccccccccCCCccCC--CCCcccchhhHHHHHHHHHhCCCCCCCCCCCchhhhHH
Q 005045 542 GDFGLAKFLFEISDNPSKNQTVSIGLKGSIGYIPPEHMNG--QVSILGDIYSYGILLLEMFTGKRPTGDMFKDDFSIHMF 619 (717)
Q Consensus 542 ~Dfg~~~~~~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~--~~~~~sDvwslG~vl~elltg~~p~~~~~~~~~~~~~~ 619 (717)
+|||.+......... ..........|++.|+|||++.+ .++.++|||||||++|+|++|..||.......... ..
T Consensus 163 ~dfg~~~~~~~~~~~--~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~~Di~slG~il~~l~~g~~pf~~~~~~~~~~-~~ 239 (303)
T 2vwi_A 163 ADFGVSAFLATGGDI--TRNKVRKTFVGTPCWMAPEVMEQVRGYDFKADIWSFGITAIELATGAAPYHKYPPMKVLM-LT 239 (303)
T ss_dssp CCCHHHHHCC-----------------CCCTTCCHHHHHHHHCCCTHHHHHHHHHHHHHHHHSSCTTTTSCGGGHHH-HH
T ss_pred EeccchheeccCCCc--cchhhhcccCCCccccCHHHhccccCCCchhhHHHHHHHHHHHHhCCCCCccCchhhHHH-HH
Confidence 999999765221110 11112234568999999999754 58999999999999999999999997653322111 11
Q ss_pred HHhcCChhhhhhcCCCCCCCCCCcHHHHHHHHHHHHHHhhhhhhhcchhhhHHHHHHHHHHhhccCCCCcCCCCCHHHHH
Q 005045 620 VSMALPDHVMDILDPSMPLDEENDEEQIEEVIEEKEMMIHIDLEVNTKNKLEECFVSVLRIGLMCSTTSPRERIAMNVVV 699 (717)
Q Consensus 620 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~cl~~~p~~Rps~~eil 699 (717)
.....+.......++.. ...++..+.+++.+||+.+|++|||+.|++
T Consensus 240 ~~~~~~~~~~~~~~~~~---------------------------------~~~~~~~~~~li~~~l~~dp~~Rps~~~ll 286 (303)
T 2vwi_A 240 LQNDPPSLETGVQDKEM---------------------------------LKKYGKSFRKMISLCLQKDPEKRPTAAELL 286 (303)
T ss_dssp HTSSCCCTTC-----CC---------------------------------CCCCCHHHHHHHHHHCCSSGGGSCCHHHHH
T ss_pred hccCCCccccccccchh---------------------------------hhhhhHHHHHHHHHHccCChhhCcCHHHHh
Confidence 11110000000000010 111245678999999999999999999998
Q ss_pred H
Q 005045 700 N 700 (717)
Q Consensus 700 ~ 700 (717)
+
T Consensus 287 ~ 287 (303)
T 2vwi_A 287 R 287 (303)
T ss_dssp T
T ss_pred h
Confidence 6
No 231
>3nsz_A CK II alpha, casein kinase II subunit alpha; inhibitor, transferase-transferase inhibitor CO; HET: ANP; 1.30A {Homo sapiens} SCOP: d.144.1.7 PDB: 2r7i_A 3pe1_A* 1jwh_A* 3pe2_A* 3r0t_A* 3h30_A* 3q9w_A* 3q9x_A* 3q9y_A* 3q9z_A* 3qa0_A 3bqc_A* 2rkp_A* 3c13_A* 3fwq_A 3rps_A* 3u9c_A* 4fbx_A* 3mb7_A* 3mb6_A* ...
Probab=100.00 E-value=1.4e-37 Score=325.54 Aligned_cols=281 Identities=19% Similarity=0.215 Sum_probs=200.3
Q ss_pred cccccccccccCcccccceEEEEe-CCCchhhhHHhHhhhhhHHHHHHHHHHHHhcCC-CCceeEEEEeeccccCCCCce
Q 005045 387 STDNFSKENLIGTGSFGSVYKGTL-GDGTIVAIKVLKLQQQGALKSFIDECNALKSTR-HRNILRVITACSSVDLEGNDF 464 (717)
Q Consensus 387 ~~~~y~~~~~ig~g~~g~v~~~~~-~~~~~vavK~~~~~~~~~~~~~~~e~~~l~~l~-h~ni~~~~~~~~~~~~~~~~~ 464 (717)
..++|++.++||+|+||.||+|++ .+++.||+|++... ..+.+.+|+++++++. ||||+++++++... ....
T Consensus 34 ~~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~---~~~~~~~E~~~l~~l~~~~~i~~~~~~~~~~---~~~~ 107 (330)
T 3nsz_A 34 NQDDYQLVRKLGRGKYSEVFEAINITNNEKVVVKILKPV---KKKKIKREIKILENLRGGPNIITLADIVKDP---VSRT 107 (330)
T ss_dssp EGGGEEEEEEEEECSSEEEEEEEETTTCCEEEEEEECSC---CHHHHHHHHHHHHHHTTSTTBCCEEEEEECT---TTCC
T ss_pred CCCceEEEEEecccCCeEEEEEEECCCCcEEEEEEeccc---chHHHHHHHHHHHHcCCCCCEEEeeeeeccC---CCCc
Confidence 357899999999999999999996 48899999998643 2467889999999996 99999999986532 2557
Q ss_pred EEEEEecCCCCChhhhccCCCCCcccccccCHHHHHHHHHHHHHHHHHHHhcCCCCeeecCCCCCCEEeCCCC-ceEEee
Q 005045 465 KALVFEFMSNGNLDQWLHPSPAEHYQFKKLSVIQRLNIAIDVASALDYLHHHCDTPIAHCDLKPSNVLLDKDM-TAHVGD 543 (717)
Q Consensus 465 ~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~dlkp~NIll~~~~-~~kl~D 543 (717)
.++||||+++++|.+++. .+++..+..++.||+.||+|||+. +|+||||||+||+++.++ .+||+|
T Consensus 108 ~~lv~e~~~~~~l~~~~~----------~~~~~~~~~~~~qi~~~l~~lH~~---~ivH~Dikp~Nil~~~~~~~~kl~D 174 (330)
T 3nsz_A 108 PALVFEHVNNTDFKQLYQ----------TLTDYDIRFYMYEILKALDYCHSM---GIMHRDVKPHNVMIDHEHRKLRLID 174 (330)
T ss_dssp EEEEEECCCCCCHHHHGG----------GCCHHHHHHHHHHHHHHHHHHHHT---TEECCCCSGGGEEEETTTTEEEECC
T ss_pred eEEEEeccCchhHHHHHH----------hCCHHHHHHHHHHHHHHHHHHHhC---CeeeCCCCHHHEEEcCCCCEEEEEe
Confidence 899999999999999874 478899999999999999999998 999999999999999777 899999
Q ss_pred eccchhcccccCCCCCCcceeecccccccccCCCccCC--CCCcccchhhHHHHHHHHHhCCCCCCCCCCCchhhhHHHH
Q 005045 544 FGLAKFLFEISDNPSKNQTVSIGLKGSIGYIPPEHMNG--QVSILGDIYSYGILLLEMFTGKRPTGDMFKDDFSIHMFVS 621 (717)
Q Consensus 544 fg~~~~~~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~--~~~~~sDvwslG~vl~elltg~~p~~~~~~~~~~~~~~~~ 621 (717)
||.+...... .......++..|+|||++.+ .++.++|||||||++|+|++|..||...............
T Consensus 175 fg~a~~~~~~--------~~~~~~~~~~~y~aPE~~~~~~~~~~~~DiwslG~il~~ll~g~~p~~~~~~~~~~l~~~~~ 246 (330)
T 3nsz_A 175 WGLAEFYHPG--------QEYNVRVASRYFKGPELLVDYQMYDYSLDMWSLGCMLASMIFRKEPFFHGHDNYDQLVRIAK 246 (330)
T ss_dssp CTTCEECCTT--------CCCCSCCSCGGGCCHHHHTTCCCCCTHHHHHHHHHHHHHHHHTCSSSSCCSSHHHHHHHHHH
T ss_pred CCCceEcCCC--------CccccccccccccChhhhcCCCcCCchhhHHHHHHHHHHHHhCCCCcccCCchHHHHHHHHH
Confidence 9999765211 11223468889999999654 4899999999999999999999999654433222222221
Q ss_pred hcCChhhhhhcCCCCCCCCCCcHHHHHHHHHHHHHHhhhhhhhcchhhhHHHHHHHHHHhhccCCCCcCCCCCHHHHHH
Q 005045 622 MALPDHVMDILDPSMPLDEENDEEQIEEVIEEKEMMIHIDLEVNTKNKLEECFVSVLRIGLMCSTTSPRERIAMNVVVN 700 (717)
Q Consensus 622 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~cl~~~p~~Rps~~eil~ 700 (717)
..-.....+.++....... . ...++..... ...............++..+.+++.+||++||++|||++|+++
T Consensus 247 ~~~~~~~~~~~~~~~~~~~-~---~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~Rpta~e~l~ 319 (330)
T 3nsz_A 247 VLGTEDLYDYIDKYNIELD-P---RFNDILGRHS--RKRWERFVHSENQHLVSPEALDFLDKLLRYDHQSRLTAREAME 319 (330)
T ss_dssp HHCHHHHHHHHHHTTCCCC-T---HHHHHHCCCC--CCCGGGGCCTTTGGGCCHHHHHHHHTTSCSSGGGSCCHHHHHT
T ss_pred hcCCchhhhHHHHhccccc-c---chhhhhhhcc--ccchhhhccccccccCCHHHHHHHHHHhcCCcccCCCHHHHhc
Confidence 1111111111111100000 0 0000000000 0000000000111223667899999999999999999999986
No 232
>3mi9_A Cell division protein kinase 9; P-TEFB, HIV-1, protein binding; HET: TPO; 2.10A {Homo sapiens} PDB: 3mia_A* 4ec9_A* 4ec8_A* 3blh_A* 3blq_A* 3blr_A* 3lq5_A* 3my1_A* 3tn8_A* 3tnh_A* 3tni_A* 4bch_A* 4bci_A* 4bcj_A* 4bcf_A*
Probab=100.00 E-value=3.3e-37 Score=325.57 Aligned_cols=211 Identities=25% Similarity=0.384 Sum_probs=171.4
Q ss_pred cccccccccccCcccccceEEEEeC-CCchhhhHHhHhhh--hhHHHHHHHHHHHHhcCCCCceeEEEEeeccccC---C
Q 005045 387 STDNFSKENLIGTGSFGSVYKGTLG-DGTIVAIKVLKLQQ--QGALKSFIDECNALKSTRHRNILRVITACSSVDL---E 460 (717)
Q Consensus 387 ~~~~y~~~~~ig~g~~g~v~~~~~~-~~~~vavK~~~~~~--~~~~~~~~~e~~~l~~l~h~ni~~~~~~~~~~~~---~ 460 (717)
..++|++.++||+|+||.||+|++. +|+.||+|++.... ......+.+|++++++++||||+++++++..... .
T Consensus 15 ~~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~~~ 94 (351)
T 3mi9_A 15 EVSKYEKLAKIGQGTFGEVFKARHRKTGQKVALKKVLMENEKEGFPITALREIKILQLLKHENVVNLIEICRTKASPYNR 94 (351)
T ss_dssp BGGGEEEEEECSSCSTTSEEEEEETTTCCEEEEEECCCSSCSSSSCHHHHHHHHHHHHCCCTTBCCEEEEEEEC------
T ss_pred cccceeEEEEEecCCCcEEEEEEECCCCCEEEEEEEecccccccchHHHHHHHHHHHhccCCCcccHhheeecccccccc
Confidence 4579999999999999999999964 89999999886442 2234567899999999999999999998755321 1
Q ss_pred CCceEEEEEecCCCCChhhhccCCCCCcccccccCHHHHHHHHHHHHHHHHHHHhcCCCCeeecCCCCCCEEeCCCCceE
Q 005045 461 GNDFKALVFEFMSNGNLDQWLHPSPAEHYQFKKLSVIQRLNIAIDVASALDYLHHHCDTPIAHCDLKPSNVLLDKDMTAH 540 (717)
Q Consensus 461 ~~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~dlkp~NIll~~~~~~k 540 (717)
..+..++||||+++ ++.+.+.... ..+++..+..++.||+.||+|||+. ||+||||||+||+++.++.+|
T Consensus 95 ~~~~~~lv~e~~~~-~l~~~l~~~~------~~~~~~~~~~i~~qi~~~l~~LH~~---~ivH~Dlkp~NIl~~~~~~~k 164 (351)
T 3mi9_A 95 CKGSIYLVFDFCEH-DLAGLLSNVL------VKFTLSEIKRVMQMLLNGLYYIHRN---KILHRDMKAANVLITRDGVLK 164 (351)
T ss_dssp --CEEEEEEECCSE-EHHHHHHCTT------SCCCHHHHHHHHHHHHHHHHHHHHT---TEECCCCSGGGEEECTTSCEE
T ss_pred CCceEEEEEeccCC-CHHHHHhhcc------CCCCHHHHHHHHHHHHHHHHHHHHC---CeeCCCCCHHHEEEcCCCCEE
Confidence 14578999999964 7777766442 5689999999999999999999998 999999999999999999999
Q ss_pred EeeeccchhcccccCCCCCCcceeecccccccccCCCccCC--CCCcccchhhHHHHHHHHHhCCCCCCCCC
Q 005045 541 VGDFGLAKFLFEISDNPSKNQTVSIGLKGSIGYIPPEHMNG--QVSILGDIYSYGILLLEMFTGKRPTGDMF 610 (717)
Q Consensus 541 l~Dfg~~~~~~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~--~~~~~sDvwslG~vl~elltg~~p~~~~~ 610 (717)
|+|||.+......... .........||+.|+|||++.+ .++.++|||||||++|+|++|..||....
T Consensus 165 l~Dfg~a~~~~~~~~~---~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~DiwslG~il~ell~g~~pf~~~~ 233 (351)
T 3mi9_A 165 LADFGLARAFSLAKNS---QPNRYTNRVVTLWYRPPELLLGERDYGPPIDLWGAGCIMAEMWTRSPIMQGNT 233 (351)
T ss_dssp ECCCTTCEECCCCSSS---SCCCCCSSCSCGGGCCHHHHTTCCSCCTHHHHHHHHHHHHHHHHSSCSCCCSS
T ss_pred Eccchhcccccccccc---cccccCCcccccCccCchhhcCCCCCCcHhHHHHHHHHHHHHHhCCCCCCCCC
Confidence 9999999865322111 1122234568999999999754 37999999999999999999999997643
No 233
>1cm8_A Phosphorylated MAP kinase P38-gamma; phosphorylation, transferase; HET: TPO PTR ANP; 2.40A {Homo sapiens} SCOP: d.144.1.7
Probab=100.00 E-value=1.5e-37 Score=329.38 Aligned_cols=277 Identities=22% Similarity=0.265 Sum_probs=195.5
Q ss_pred cccccccccccCcccccceEEEEeC-CCchhhhHHhHhh--hhhHHHHHHHHHHHHhcCCCCceeEEEEeecccc-CCCC
Q 005045 387 STDNFSKENLIGTGSFGSVYKGTLG-DGTIVAIKVLKLQ--QQGALKSFIDECNALKSTRHRNILRVITACSSVD-LEGN 462 (717)
Q Consensus 387 ~~~~y~~~~~ig~g~~g~v~~~~~~-~~~~vavK~~~~~--~~~~~~~~~~e~~~l~~l~h~ni~~~~~~~~~~~-~~~~ 462 (717)
..++|++.+.||+|+||.||.|.+. +|+.||+|++... .....+++.+|++++++++||||+++++++.... ....
T Consensus 23 ~~~~y~~~~~lG~G~~g~V~~a~~~~~~~~vaiK~~~~~~~~~~~~~~~~~E~~~l~~l~hpnIv~l~~~~~~~~~~~~~ 102 (367)
T 1cm8_A 23 VRAVYRDLQPVGSGAYGAVCSAVDGRTGAKVAIKKLYRPFQSELFAKRAYRELRLLKHMRHENVIGLLDVFTPDETLDDF 102 (367)
T ss_dssp CBSSEEEEEEC------CEEEEEETTTCCEEEEEECSSTTSSHHHHHHHHHHHHHHHHCCBTTBCCCSEEECSCSSTTTC
T ss_pred ecceEEEeEEeeecCCeEEEEEEECCCCCEEEEEEeCccccCHHHHHHHHHHHHHHHhCCCcCCCCceeeEecCCccccC
Confidence 4578999999999999999999964 7999999988532 3344677889999999999999999999875432 1223
Q ss_pred ceEEEEEecCCCCChhhhccCCCCCcccccccCHHHHHHHHHHHHHHHHHHHhcCCCCeeecCCCCCCEEeCCCCceEEe
Q 005045 463 DFKALVFEFMSNGNLDQWLHPSPAEHYQFKKLSVIQRLNIAIDVASALDYLHHHCDTPIAHCDLKPSNVLLDKDMTAHVG 542 (717)
Q Consensus 463 ~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~dlkp~NIll~~~~~~kl~ 542 (717)
...|+||||+ +++|.+++.. ..+++..+..++.||+.||+|||+. ||+||||||+||+++.++.+||+
T Consensus 103 ~~~~lv~e~~-~~~L~~~~~~--------~~l~~~~~~~~~~qi~~~L~~LH~~---~ivH~Dlkp~NIll~~~~~~kl~ 170 (367)
T 1cm8_A 103 TDFYLVMPFM-GTDLGKLMKH--------EKLGEDRIQFLVYQMLKGLRYIHAA---GIIHRDLKPGNLAVNEDCELKIL 170 (367)
T ss_dssp CCCEEEEECC-SEEHHHHHHH--------CCCCHHHHHHHHHHHHHHHHHHHHT---TEECCCCCGGGEEECTTCCEEEC
T ss_pred ceEEEEEecC-CCCHHHHHhc--------CCCCHHHHHHHHHHHHHHHHHHHHC---CccccCcCHHHEEEcCCCCEEEE
Confidence 4579999999 7899999864 3588999999999999999999998 99999999999999999999999
Q ss_pred eeccchhcccccCCCCCCcceeecccccccccCCCccCC--CCCcccchhhHHHHHHHHHhCCCCCCCCCCCchhhhHHH
Q 005045 543 DFGLAKFLFEISDNPSKNQTVSIGLKGSIGYIPPEHMNG--QVSILGDIYSYGILLLEMFTGKRPTGDMFKDDFSIHMFV 620 (717)
Q Consensus 543 Dfg~~~~~~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~--~~~~~sDvwslG~vl~elltg~~p~~~~~~~~~~~~~~~ 620 (717)
|||.++.... ......+|..|+|||++.+ .++.++||||+||++|+|++|+.||.+....+. +....
T Consensus 171 Dfg~a~~~~~----------~~~~~~~t~~y~aPE~~~~~~~~~~~~DiwslG~il~ell~g~~pf~~~~~~~~-l~~i~ 239 (367)
T 1cm8_A 171 DFGLARQADS----------EMTGYVVTRWYRAPEVILNWMRYTQTVDIWSVGCIMAEMITGKTLFKGSDHLDQ-LKEIM 239 (367)
T ss_dssp CCTTCEECCS----------SCCSSCSCGGGCCTHHHHTTTCCCTTHHHHHHHHHHHHHHHSSCSSCCSSHHHH-HHHHH
T ss_pred eeeccccccc----------ccCcCcCCCCcCCHHHHhCCCCCChhhhHHHHHHHHHHHHhCCCCCCCCCHHHH-HHHHH
Confidence 9999986411 1233568999999999654 589999999999999999999999976432211 11111
Q ss_pred H--hcCChhhhhhcCCCCCCCCCCcHHHHHHHHHHHHHHhhhhhhhcchhhhHHHHHHHHHHhhccCCCCcCCCCCHHHH
Q 005045 621 S--MALPDHVMDILDPSMPLDEENDEEQIEEVIEEKEMMIHIDLEVNTKNKLEECFVSVLRIGLMCSTTSPRERIAMNVV 698 (717)
Q Consensus 621 ~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~cl~~~p~~Rps~~ei 698 (717)
. ...+......+.. .....+...... .....-.......+..+.+++.+||+.||++|||++|+
T Consensus 240 ~~~g~~~~~~~~~~~~----------~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~ll~~mL~~dP~~R~t~~e~ 305 (367)
T 1cm8_A 240 KVTGTPPAEFVQRLQS----------DEAKNYMKGLPE----LEKKDFASILTNASPLAVNLLEKMLVLDAEQRVTAGEA 305 (367)
T ss_dssp HHHCCCCHHHHHTCSC----------HHHHHHHHHSCC----CCCCCGGGTCTTCCHHHHHHHHHHSCSSTTTSCCHHHH
T ss_pred HhcCCCCHHHHHHhhh----------HHHHHHHHhCCC----CCCCCHHHHCCCCCHHHHHHHHHHccCChhHCCCHHHH
Confidence 0 1111111110000 000001000000 00000000112235668899999999999999999999
Q ss_pred HH
Q 005045 699 VN 700 (717)
Q Consensus 699 l~ 700 (717)
++
T Consensus 306 l~ 307 (367)
T 1cm8_A 306 LA 307 (367)
T ss_dssp HH
T ss_pred hc
Confidence 87
No 234
>3bhy_A Death-associated protein kinase 3; death associated kinase, DAPK3, ZIP kinase, ZIPK, DAP kinase like kinase, DLK, structural genomics consortium; HET: 7CP; 1.24A {Homo sapiens} PDB: 3bqr_A* 2j90_A* 1yrp_A* 2yak_A* 2y4p_A* 3f5u_A* 1jks_A 1jkk_A* 1ig1_A* 1jkl_A 1jkt_A 3eh9_A* 3eha_A* 3f5g_A* 1p4f_A* 1wvw_A 1wvx_A* 1wvy_A* 2w4j_A* 3dgk_A ...
Probab=100.00 E-value=1.8e-37 Score=317.30 Aligned_cols=257 Identities=22% Similarity=0.320 Sum_probs=199.9
Q ss_pred ccccccccccCcccccceEEEEeC-CCchhhhHHhHhhhh------hHHHHHHHHHHHHhcCCCCceeEEEEeeccccCC
Q 005045 388 TDNFSKENLIGTGSFGSVYKGTLG-DGTIVAIKVLKLQQQ------GALKSFIDECNALKSTRHRNILRVITACSSVDLE 460 (717)
Q Consensus 388 ~~~y~~~~~ig~g~~g~v~~~~~~-~~~~vavK~~~~~~~------~~~~~~~~e~~~l~~l~h~ni~~~~~~~~~~~~~ 460 (717)
.++|++.+.||+|+||.||.|++. +++.||+|++..... ...+.+.+|++++++++||||+++++++.
T Consensus 4 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~~avK~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~~i~~~~~~~~----- 78 (283)
T 3bhy_A 4 EDHYEMGEELGSGQFAIVRKCRQKGTGKEYAAKFIKKRRLSSSRRGVSREEIEREVNILREIRHPNIITLHDIFE----- 78 (283)
T ss_dssp HHHEEEEEEEEECSSEEEEEEEETTTCCEEEEEEEEBCSSTTCSSSBCHHHHHHHHHHHHHCCCTTBCCEEEEEE-----
T ss_pred hhhhhhHHhhcccCceEEEEEEEcCCCCeeehHHhhhccccccccchHHHHHHHHHHHHHhCCCCCeeehhheec-----
Confidence 468999999999999999999976 799999998864321 13577899999999999999999999954
Q ss_pred CCceEEEEEecCCCCChhhhccCCCCCcccccccCHHHHHHHHHHHHHHHHHHHhcCCCCeeecCCCCCCEEeCCCC---
Q 005045 461 GNDFKALVFEFMSNGNLDQWLHPSPAEHYQFKKLSVIQRLNIAIDVASALDYLHHHCDTPIAHCDLKPSNVLLDKDM--- 537 (717)
Q Consensus 461 ~~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~dlkp~NIll~~~~--- 537 (717)
.....++||||+++++|.+++... ..+++..+..++.||+.||+|||+. +++||||||+||+++.++
T Consensus 79 ~~~~~~lv~e~~~~~~L~~~l~~~-------~~~~~~~~~~~~~~i~~~l~~lH~~---~i~H~dl~p~Nil~~~~~~~~ 148 (283)
T 3bhy_A 79 NKTDVVLILELVSGGELFDFLAEK-------ESLTEDEATQFLKQILDGVHYLHSK---RIAHFDLKPENIMLLDKNVPN 148 (283)
T ss_dssp CSSEEEEEEECCCSCBHHHHHHHH-------SSCCHHHHHHHHHHHHHHHHHHHHT---TEECSCCSGGGEEESCSSSSS
T ss_pred CCCeEEEEEeecCCCcHHHHHHhc-------CCCCHHHHHHHHHHHHHHHHHHHhC---CccCCCCChHHEEEecCCCCC
Confidence 445899999999999999998643 5689999999999999999999998 999999999999998877
Q ss_pred -ceEEeeeccchhcccccCCCCCCcceeecccccccccCCCccCC-CCCcccchhhHHHHHHHHHhCCCCCCCCCCCchh
Q 005045 538 -TAHVGDFGLAKFLFEISDNPSKNQTVSIGLKGSIGYIPPEHMNG-QVSILGDIYSYGILLLEMFTGKRPTGDMFKDDFS 615 (717)
Q Consensus 538 -~~kl~Dfg~~~~~~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~-~~~~~sDvwslG~vl~elltg~~p~~~~~~~~~~ 615 (717)
.+||+|||.+...... .......+++.|+|||++.+ .++.++||||||+++|+|++|..||.......
T Consensus 149 ~~~kl~dfg~~~~~~~~--------~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~g~~p~~~~~~~~-- 218 (283)
T 3bhy_A 149 PRIKLIDFGIAHKIEAG--------NEFKNIFGTPEFVAPEIVNYEPLGLEADMWSIGVITYILLSGASPFLGETKQE-- 218 (283)
T ss_dssp CCEEECCCTTCEECC----------------CCCGGGCCHHHHTTCCCCTHHHHHHHHHHHHHHHHSSCTTCCSSHHH--
T ss_pred CceEEEecccceeccCC--------CcccccCCCcCccCcceecCCCCCcchhhhhHHHHHHHHHHCCCCCCCcchHH--
Confidence 8999999999765211 11233458999999999764 58999999999999999999999997542211
Q ss_pred hhHHHHhcCChhhhhhcCCCCCCCCCCcHHHHHHHHHHHHHHhhhhhhhcchhhhHHHHHHHHHHhhccCCCCcCCCCCH
Q 005045 616 IHMFVSMALPDHVMDILDPSMPLDEENDEEQIEEVIEEKEMMIHIDLEVNTKNKLEECFVSVLRIGLMCSTTSPRERIAM 695 (717)
Q Consensus 616 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~cl~~~p~~Rps~ 695 (717)
.... +........ ......++..+.+++.+||+.+|++|||+
T Consensus 219 ~~~~-----------~~~~~~~~~---------------------------~~~~~~~~~~~~~li~~~l~~dp~~Rps~ 260 (283)
T 3bhy_A 219 TLTN-----------ISAVNYDFD---------------------------EEYFSNTSELAKDFIRRLLVKDPKRRMTI 260 (283)
T ss_dssp HHHH-----------HHTTCCCCC---------------------------HHHHTTCCHHHHHHHHTTSCSSGGGSCCH
T ss_pred HHHH-----------hHhcccCCc---------------------------chhcccCCHHHHHHHHHHccCCHhHCcCH
Confidence 1000 000000000 00111225567899999999999999999
Q ss_pred HHHHH--HHHHHHH
Q 005045 696 NVVVN--NLKTIRN 707 (717)
Q Consensus 696 ~eil~--~l~~i~~ 707 (717)
.|+++ .++.++.
T Consensus 261 ~~~l~h~~~~~~~~ 274 (283)
T 3bhy_A 261 AQSLEHSWIKAIRR 274 (283)
T ss_dssp HHHHHCHHHHHHHH
T ss_pred HHHHhCHHHHHHHH
Confidence 99997 4555554
No 235
>3cek_A Dual specificity protein kinase TTK; HMPS1, PYT, ESK, phosphotyros picked threonine kinase, SGC, structural genomics consortiu binding; HET: 7PE; 2.30A {Homo sapiens} PDB: 3gfw_A* 3h9f_A* 2x9e_A* 3hmp_A* 3hmn_A* 3hmo_A*
Probab=100.00 E-value=5.8e-38 Score=325.82 Aligned_cols=266 Identities=24% Similarity=0.391 Sum_probs=199.9
Q ss_pred ccccCCCCcccccccccccccccccCcccccceEEEEeCCCchhhhHHhHhh--hhhHHHHHHHHHHHHhcCC--CCcee
Q 005045 373 EVRQSGMSYSDISKSTDNFSKENLIGTGSFGSVYKGTLGDGTIVAIKVLKLQ--QQGALKSFIDECNALKSTR--HRNIL 448 (717)
Q Consensus 373 ~~~~~~~s~~~~~~~~~~y~~~~~ig~g~~g~v~~~~~~~~~~vavK~~~~~--~~~~~~~~~~e~~~l~~l~--h~ni~ 448 (717)
......+.+..+....++|++.+.||+|+||.||+|.+++++.||+|++... .......+.+|+++++++. |+||+
T Consensus 12 ~~~~~~~~~~~~~~~~~~y~~~~~lg~G~~g~Vy~~~~~~~~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~~~~~~iv 91 (313)
T 3cek_A 12 DLGTENLYFQSMSVKGRIYSILKQIGSGGSSKVFQVLNEKKQIYAIKYVNLEEADNQTLDSYRNEIAYLNKLQQHSDKII 91 (313)
T ss_dssp --------CCEEEETTEEEEEEEEEECCSSEEEEEEECTTCCEEEEEEEECSSCCHHHHHHHHHHHHHHHHHGGGCTTBC
T ss_pred cCCCCCCCeeeeeeccceEEEEEEecCCCCEEEEEEEcCCCcEEEEEEeccccccccchHHHHHHHHHHHhccccCCceE
Confidence 3345567788888899999999999999999999999888999999998643 2345678899999999996 59999
Q ss_pred EEEEeeccccCCCCceEEEEEecCCCCChhhhccCCCCCcccccccCHHHHHHHHHHHHHHHHHHHhcCCCCeeecCCCC
Q 005045 449 RVITACSSVDLEGNDFKALVFEFMSNGNLDQWLHPSPAEHYQFKKLSVIQRLNIAIDVASALDYLHHHCDTPIAHCDLKP 528 (717)
Q Consensus 449 ~~~~~~~~~~~~~~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~dlkp 528 (717)
++++++. .....++||| +.+++|.+++... ..+++..+..++.||+.||+|||+. +|+||||||
T Consensus 92 ~~~~~~~-----~~~~~~lv~e-~~~~~L~~~l~~~-------~~~~~~~~~~i~~qi~~aL~~LH~~---~ivH~dlkp 155 (313)
T 3cek_A 92 RLYDYEI-----TDQYIYMVME-CGNIDLNSWLKKK-------KSIDPWERKSYWKNMLEAVHTIHQH---GIVHSDLKP 155 (313)
T ss_dssp CEEEEEE-----CSSEEEEEEC-CCSEEHHHHHHHC-------SSCCHHHHHHHHHHHHHHHHHHHHT---TCCCCCCCG
T ss_pred EEEEEee-----cCCEEEEEEe-cCCCcHHHHHHhc-------CCCCHHHHHHHHHHHHHHHHHHHHC---CceecCCCc
Confidence 9999854 3458999999 4588999999754 5689999999999999999999998 999999999
Q ss_pred CCEEeCCCCceEEeeeccchhcccccCCCCCCcceeecccccccccCCCccCC------------CCCcccchhhHHHHH
Q 005045 529 SNVLLDKDMTAHVGDFGLAKFLFEISDNPSKNQTVSIGLKGSIGYIPPEHMNG------------QVSILGDIYSYGILL 596 (717)
Q Consensus 529 ~NIll~~~~~~kl~Dfg~~~~~~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~------------~~~~~sDvwslG~vl 596 (717)
+||+++ ++.+||+|||.+....... .........|++.|+|||++.+ .++.++|||||||++
T Consensus 156 ~NIl~~-~~~~kL~Dfg~~~~~~~~~-----~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~~~~~~~~~~~Di~slG~il 229 (313)
T 3cek_A 156 ANFLIV-DGMLKLIDFGIANQMQPDT-----TSVVKDSQVGTVNYMPPEAIKDMSSSRENGKSKSKISPKSDVWSLGCIL 229 (313)
T ss_dssp GGEEEE-TTEEEECCCSSSCC-------------------CCGGGCCHHHHTTCC----------CCCHHHHHHHHHHHH
T ss_pred ccEEEE-CCeEEEeeccccccccCcc-----ccccccCCCCCCCcCCHHHHhhcccccccccccccCCchHHHHHHHHHH
Confidence 999996 4899999999998652211 1112233568999999999754 578899999999999
Q ss_pred HHHHhCCCCCCCCCCCchhhhHHHHhcCChhhhhhcCCCCCCCCCCcHHHHHHHHHHHHHHhhhhhhhcchhhhHHHHHH
Q 005045 597 LEMFTGKRPTGDMFKDDFSIHMFVSMALPDHVMDILDPSMPLDEENDEEQIEEVIEEKEMMIHIDLEVNTKNKLEECFVS 676 (717)
Q Consensus 597 ~elltg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 676 (717)
|+|++|..||......... +....++...... +..++..
T Consensus 230 ~el~~g~~pf~~~~~~~~~------------~~~~~~~~~~~~~-----------------------------~~~~~~~ 268 (313)
T 3cek_A 230 YYMTYGKTPFQQIINQISK------------LHAIIDPNHEIEF-----------------------------PDIPEKD 268 (313)
T ss_dssp HHHHHSSCTTTTCCSHHHH------------HHHHHCTTSCCCC-----------------------------CCCSCHH
T ss_pred HHHHhCCCchhhHHHHHHH------------HHHHHhcccccCC-----------------------------cccchHH
Confidence 9999999999754322111 1111121111110 0111446
Q ss_pred HHHHhhccCCCCcCCCCCHHHHHHH
Q 005045 677 VLRIGLMCSTTSPRERIAMNVVVNN 701 (717)
Q Consensus 677 l~~li~~cl~~~p~~Rps~~eil~~ 701 (717)
+.+++.+||+.+|++|||++|+++.
T Consensus 269 l~~li~~~l~~dp~~Rps~~ell~h 293 (313)
T 3cek_A 269 LQDVLKCCLKRDPKQRISIPELLAH 293 (313)
T ss_dssp HHHHHHHHTCSSTTTSCCHHHHHTS
T ss_pred HHHHHHHHccCCcccCcCHHHHhcC
Confidence 7889999999999999999999864
No 236
>2clq_A Mitogen-activated protein kinase kinase kinase 5; transferase, metal-binding, apoptosis; HET: STU; 2.3A {Homo sapiens}
Probab=100.00 E-value=8e-38 Score=321.92 Aligned_cols=253 Identities=24% Similarity=0.349 Sum_probs=194.5
Q ss_pred ccccccccccCcccccceEEEEeC-CCchhhhHHhHhhhhhHHHHHHHHHHHHhcCCCCceeEEEEeeccccCCCCceEE
Q 005045 388 TDNFSKENLIGTGSFGSVYKGTLG-DGTIVAIKVLKLQQQGALKSFIDECNALKSTRHRNILRVITACSSVDLEGNDFKA 466 (717)
Q Consensus 388 ~~~y~~~~~ig~g~~g~v~~~~~~-~~~~vavK~~~~~~~~~~~~~~~e~~~l~~l~h~ni~~~~~~~~~~~~~~~~~~~ 466 (717)
.++|.....||+|+||.||+|.+. +++.||+|.+........+.+.+|+.+++.++||||+++++++. ..+..+
T Consensus 21 ~~~~~~~~~lg~G~~g~Vy~~~~~~~~~~vaiK~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~-----~~~~~~ 95 (295)
T 2clq_A 21 YDENGDRVVLGKGTYGIVYAGRDLSNQVRIAIKEIPERDSRYSQPLHEEIALHKHLKHKNIVQYLGSFS-----ENGFIK 95 (295)
T ss_dssp BCTTSSBCEEEECSSSEEEEEEETTTCCEEEEEEEECCCC---HHHHHHHHHHHTCCCTTBCCEEEEEE-----ETTEEE
T ss_pred ccCCCCcEEEeecCcEEEEEEEECCCCeEEEEEEccCCchHHHHHHHHHHHHHHhCCCCCEeeEeeEEE-----eCCcEE
Confidence 445566669999999999999964 78899999987665556678999999999999999999999954 345899
Q ss_pred EEEecCCCCChhhhccCCCCCcccccccCHHHHHHHHHHHHHHHHHHHhcCCCCeeecCCCCCCEEeCC-CCceEEeeec
Q 005045 467 LVFEFMSNGNLDQWLHPSPAEHYQFKKLSVIQRLNIAIDVASALDYLHHHCDTPIAHCDLKPSNVLLDK-DMTAHVGDFG 545 (717)
Q Consensus 467 lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~dlkp~NIll~~-~~~~kl~Dfg 545 (717)
+||||+++++|.+++..... ...+++..+..++.||+.||+|||+. +++||||||+||+++. ++.+||+|||
T Consensus 96 lv~e~~~~~~L~~~l~~~~~----~~~~~~~~~~~~~~qi~~~l~~lH~~---~i~H~dl~p~Nil~~~~~~~~kl~Dfg 168 (295)
T 2clq_A 96 IFMEQVPGGSLSALLRSKWG----PLKDNEQTIGFYTKQILEGLKYLHDN---QIVHRDIKGDNVLINTYSGVLKISDFG 168 (295)
T ss_dssp EEEECCSEEEHHHHHHHTTC----CCTTCHHHHHHHHHHHHHHHHHHHHT---TEECCCCSGGGEEEETTTCCEEECCTT
T ss_pred EEEEeCCCCCHHHHHHhhcc----CCCccHHHHHHHHHHHHHHHHHHHhC---CEEccCCChhhEEEECCCCCEEEeecc
Confidence 99999999999999875421 13567889999999999999999998 9999999999999987 8999999999
Q ss_pred cchhcccccCCCCCCcceeecccccccccCCCccCCC---CCcccchhhHHHHHHHHHhCCCCCCCCCCCchhhhHHHHh
Q 005045 546 LAKFLFEISDNPSKNQTVSIGLKGSIGYIPPEHMNGQ---VSILGDIYSYGILLLEMFTGKRPTGDMFKDDFSIHMFVSM 622 (717)
Q Consensus 546 ~~~~~~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~---~~~~sDvwslG~vl~elltg~~p~~~~~~~~~~~~~~~~~ 622 (717)
.+...... ........|++.|+|||++.+. ++.++|||||||++|+|++|..||................
T Consensus 169 ~~~~~~~~-------~~~~~~~~~~~~y~aPE~~~~~~~~~~~~~Di~slG~il~~l~~g~~pf~~~~~~~~~~~~~~~~ 241 (295)
T 2clq_A 169 TSKRLAGI-------NPCTETFTGTLQYMAPEIIDKGPRGYGKAADIWSLGCTIIEMATGKPPFYELGEPQAAMFKVGMF 241 (295)
T ss_dssp TCEESCC------------CCCCCCGGGCCHHHHHHGGGGCSHHHHHHHHHHHHHHHHHTSCTTGGGSSHHHHHHHHHHH
T ss_pred cccccCCC-------CCcccccCCCccccChhhhcCCCCCCCcHHHHHHHHHHHHHHHHCCCCccCCCchhHHHHhhccc
Confidence 99765211 1112345689999999996542 7899999999999999999999996432221111100000
Q ss_pred cCChhhhhhcCCCCCCCCCCcHHHHHHHHHHHHHHhhhhhhhcchhhhHHHHHHHHHHhhccCCCCcCCCCCHHHHHH
Q 005045 623 ALPDHVMDILDPSMPLDEENDEEQIEEVIEEKEMMIHIDLEVNTKNKLEECFVSVLRIGLMCSTTSPRERIAMNVVVN 700 (717)
Q Consensus 623 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~cl~~~p~~Rps~~eil~ 700 (717)
...+.+ +..++..+.+++.+||+.+|++|||+.|+++
T Consensus 242 --------~~~~~~---------------------------------~~~~~~~~~~li~~~l~~dp~~Rps~~~ll~ 278 (295)
T 2clq_A 242 --------KVHPEI---------------------------------PESMSAEAKAFILKCFEPDPDKRACANDLLV 278 (295)
T ss_dssp --------CCCCCC---------------------------------CTTSCHHHHHHHHHTTCSSTTTSCCHHHHHT
T ss_pred --------cccccc---------------------------------cccCCHHHHHHHHHHccCChhhCCCHHHHhc
Confidence 001111 1122556789999999999999999999985
No 237
>2x7f_A TRAF2 and NCK-interacting protein kinase; serine/threonine-protein kinase, phosphoprotein; HET: 824; 2.80A {Homo sapiens}
Probab=100.00 E-value=1e-37 Score=325.95 Aligned_cols=265 Identities=24% Similarity=0.339 Sum_probs=200.9
Q ss_pred CCCcccccccccccccccccCcccccceEEEEeC-CCchhhhHHhHhhhhhHHHHHHHHHHHHhcC-CCCceeEEEEeec
Q 005045 378 GMSYSDISKSTDNFSKENLIGTGSFGSVYKGTLG-DGTIVAIKVLKLQQQGALKSFIDECNALKST-RHRNILRVITACS 455 (717)
Q Consensus 378 ~~s~~~~~~~~~~y~~~~~ig~g~~g~v~~~~~~-~~~~vavK~~~~~~~~~~~~~~~e~~~l~~l-~h~ni~~~~~~~~ 455 (717)
.+.+.++....++|++.+.||+|+||.||+|++. +++.||+|++..... ....+.+|+.+++++ +||||+++++++.
T Consensus 13 ~~~~~~l~~~~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~vaiK~~~~~~~-~~~~~~~e~~~l~~l~~h~~i~~~~~~~~ 91 (326)
T 2x7f_A 13 EIDLSALRDPAGIFELVELVGNGTYGQVYKGRHVKTGQLAAIKVMDVTGD-EEEEIKQEINMLKKYSHHRNIATYYGAFI 91 (326)
T ss_dssp ---CCCCCCCTTTEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEECCSS-TTHHHHHHHHHHHHHCCSTTBCCEEEEEE
T ss_pred hccchhccCCCCcEEEEEEeccCCCEEEEEEEECCCCCeEEEEEEecCcc-cHHHHHHHHHHHHhccCCCCeeeeeeEEe
Confidence 4677788889999999999999999999999964 789999999864432 346788999999998 8999999999975
Q ss_pred cccC-CCCceEEEEEecCCCCChhhhccCCCCCcccccccCHHHHHHHHHHHHHHHHHHHhcCCCCeeecCCCCCCEEeC
Q 005045 456 SVDL-EGNDFKALVFEFMSNGNLDQWLHPSPAEHYQFKKLSVIQRLNIAIDVASALDYLHHHCDTPIAHCDLKPSNVLLD 534 (717)
Q Consensus 456 ~~~~-~~~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~dlkp~NIll~ 534 (717)
.... ...+..++||||+++++|.+++.... ...+++..+..++.||+.||+|||+. +++||||||+||+++
T Consensus 92 ~~~~~~~~~~~~lv~e~~~~~~L~~~l~~~~-----~~~~~~~~~~~i~~qi~~~l~~lH~~---~ivH~dlkp~NIl~~ 163 (326)
T 2x7f_A 92 KKNPPGMDDQLWLVMEFCGAGSVTDLIKNTK-----GNTLKEEWIAYICREILRGLSHLHQH---KVIHRDIKGQNVLLT 163 (326)
T ss_dssp ECC--CCCCEEEEEEECCTTEEHHHHHHHSG-----GGCCCHHHHHHHHHHHHHHHHHHHHT---TCCCCCCSGGGEEEC
T ss_pred eccCccccceEEEEEEcCCCCcHHHHHHhcc-----cCCCCHHHHHHHHHHHHHHHHHHHHC---CccccCCcHHHEEEc
Confidence 4321 11457899999999999999987542 15689999999999999999999998 999999999999999
Q ss_pred CCCceEEeeeccchhcccccCCCCCCcceeecccccccccCCCccC------CCCCcccchhhHHHHHHHHHhCCCCCCC
Q 005045 535 KDMTAHVGDFGLAKFLFEISDNPSKNQTVSIGLKGSIGYIPPEHMN------GQVSILGDIYSYGILLLEMFTGKRPTGD 608 (717)
Q Consensus 535 ~~~~~kl~Dfg~~~~~~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~------~~~~~~sDvwslG~vl~elltg~~p~~~ 608 (717)
.++.+||+|||.+...... ........|++.|+|||++. +.++.++|||||||++|+|++|..||..
T Consensus 164 ~~~~~kl~Dfg~~~~~~~~-------~~~~~~~~~~~~y~aPE~~~~~~~~~~~~~~~~Di~slG~il~~l~~g~~p~~~ 236 (326)
T 2x7f_A 164 ENAEVKLVDFGVSAQLDRT-------VGRRNTFIGTPYWMAPEVIACDENPDATYDFKSDLWSLGITAIEMAEGAPPLCD 236 (326)
T ss_dssp TTCCEEECCCTTTC--------------------CCGGGCCHHHHC--------CCTTHHHHHHHHHHHHHHHSSCTTTT
T ss_pred CCCCEEEeeCcCceecCcC-------ccccccccCCccccChhhhccccccCcCCCccchHHHHHHHHHHHHhCCCCCCC
Confidence 9999999999998765211 11223356899999999964 3478999999999999999999999965
Q ss_pred CCCCchhhhHHHHhcCChhhhhhcCCCCCCCCCCcHHHHHHHHHHHHHHhhhhhhhcchhhhHHHHHHHHHHhhccCCCC
Q 005045 609 MFKDDFSIHMFVSMALPDHVMDILDPSMPLDEENDEEQIEEVIEEKEMMIHIDLEVNTKNKLEECFVSVLRIGLMCSTTS 688 (717)
Q Consensus 609 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~cl~~~ 688 (717)
...... . .... ....+... ...++..+.+++.+||+.+
T Consensus 237 ~~~~~~-~-~~~~--------~~~~~~~~--------------------------------~~~~~~~l~~li~~~l~~d 274 (326)
T 2x7f_A 237 MHPMRA-L-FLIP--------RNPAPRLK--------------------------------SKKWSKKFQSFIESCLVKN 274 (326)
T ss_dssp SCHHHH-H-HHHH--------HSCCCCCS--------------------------------CSCSCHHHHHHHHHHCCSS
T ss_pred CcHHHH-H-HHhh--------cCccccCC--------------------------------ccccCHHHHHHHHHHhccC
Confidence 422111 0 0000 00000000 0112456789999999999
Q ss_pred cCCCCCHHHHHH
Q 005045 689 PRERIAMNVVVN 700 (717)
Q Consensus 689 p~~Rps~~eil~ 700 (717)
|++|||+.|+++
T Consensus 275 p~~Rps~~~ll~ 286 (326)
T 2x7f_A 275 HSQRPATEQLMK 286 (326)
T ss_dssp GGGSCCHHHHHT
T ss_pred hhhCCCHHHHhh
Confidence 999999999986
No 238
>3eb0_A Putative uncharacterized protein; kinase cryptosporidium parvum, ATP-binding, kinase, nucleoti binding; HET: PTR DRK; 2.65A {Cryptosporidium parvum iowa II}
Probab=100.00 E-value=1.5e-37 Score=332.01 Aligned_cols=283 Identities=22% Similarity=0.269 Sum_probs=197.0
Q ss_pred ccccccccccccccCcccccceEEEEe-CCCchhhhHHhHhhhhhHHHHHHHHHHHHhcCCCCceeEEEEeeccccC---
Q 005045 384 ISKSTDNFSKENLIGTGSFGSVYKGTL-GDGTIVAIKVLKLQQQGALKSFIDECNALKSTRHRNILRVITACSSVDL--- 459 (717)
Q Consensus 384 ~~~~~~~y~~~~~ig~g~~g~v~~~~~-~~~~~vavK~~~~~~~~~~~~~~~e~~~l~~l~h~ni~~~~~~~~~~~~--- 459 (717)
+....++|++.+.||+|+||.||+|.+ .+|+.||+|++.... ....+|+++++.++||||+++++++.....
T Consensus 2 l~~~~~~y~~~~~lG~G~fg~V~~a~~~~~~~~vAiK~~~~~~----~~~~~E~~il~~l~hpnIv~l~~~~~~~~~~~~ 77 (383)
T 3eb0_A 2 LETSSKKYSLGKTLGTGSFGIVCEVFDIESGKRFALKKVLQDP----RYKNRELDIMKVLDHVNIIKLVDYFYTTGDEEP 77 (383)
T ss_dssp ----CTTEEEEEEEECC-CEEEEEEEETTTCCEEEEEEEECCT----TSCCHHHHHHTTCCCTTBCCEEEEEEEC-----
T ss_pred CccccceEEEEEEEEeccCEEEEEEEECCCCCEEEEEEEecCc----chHHHHHHHHHHcCCCCccchhheeeecCcccc
Confidence 345678999999999999999999996 489999999886432 223469999999999999999998754321
Q ss_pred ------------------------------CCCceEEEEEecCCCCChhhhccCCCCCcccccccCHHHHHHHHHHHHHH
Q 005045 460 ------------------------------EGNDFKALVFEFMSNGNLDQWLHPSPAEHYQFKKLSVIQRLNIAIDVASA 509 (717)
Q Consensus 460 ------------------------------~~~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~i~~~i~~~ 509 (717)
.+....++||||++ ++|.+.+..... ....+++..+..++.||+.|
T Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lv~e~~~-~~L~~~l~~~~~---~~~~l~~~~~~~i~~qi~~a 153 (383)
T 3eb0_A 78 KPPQPPDDHNKLGGKNNGVNNHHKSVIVNPSQNKYLNVIMEYVP-DTLHKVLKSFIR---SGRSIPMNLISIYIYQLFRA 153 (383)
T ss_dssp --------------------------------CCEEEEEECCCS-EEHHHHHHHHHH---TTCCCCHHHHHHHHHHHHHH
T ss_pred cccccccccccccccccccccccccccccCCCceEEEEEEecCC-ccHHHHHHHHHh---cCCCCCHHHHHHHHHHHHHH
Confidence 33456899999997 577766642100 11568999999999999999
Q ss_pred HHHHHhcCCCCeeecCCCCCCEEeC-CCCceEEeeeccchhcccccCCCCCCcceeecccccccccCCCccCC--CCCcc
Q 005045 510 LDYLHHHCDTPIAHCDLKPSNVLLD-KDMTAHVGDFGLAKFLFEISDNPSKNQTVSIGLKGSIGYIPPEHMNG--QVSIL 586 (717)
Q Consensus 510 l~~LH~~~~~~ivH~dlkp~NIll~-~~~~~kl~Dfg~~~~~~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~--~~~~~ 586 (717)
|+|||+. ||+||||||+||+++ .++.+||+|||.+...... .......++..|+|||++.+ .++.+
T Consensus 154 L~~LH~~---gi~H~Dikp~Nil~~~~~~~~kl~Dfg~a~~~~~~--------~~~~~~~~t~~y~aPE~~~~~~~~~~~ 222 (383)
T 3eb0_A 154 VGFIHSL---GICHRDIKPQNLLVNSKDNTLKLCDFGSAKKLIPS--------EPSVAYICSRFYRAPELMLGATEYTPS 222 (383)
T ss_dssp HHHHHTT---TEECSCCCGGGEEEETTTTEEEECCCTTCEECCTT--------SCCCCCCCCSSCCCHHHHTTCSSCCTH
T ss_pred HHHHHHC---cCccCccCHHHEEEcCCCCcEEEEECCCCcccCCC--------CCCcCcccCCCccCHHHhcCCCCCCcc
Confidence 9999997 999999999999997 6889999999999865211 12233567999999999655 38999
Q ss_pred cchhhHHHHHHHHHhCCCCCCCCCCCchhhhHHHHh-cCC--hhhhhhc----CCCCCCCCCCcHHHHHHHHHHHHHHhh
Q 005045 587 GDIYSYGILLLEMFTGKRPTGDMFKDDFSIHMFVSM-ALP--DHVMDIL----DPSMPLDEENDEEQIEEVIEEKEMMIH 659 (717)
Q Consensus 587 sDvwslG~vl~elltg~~p~~~~~~~~~~~~~~~~~-~~~--~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~ 659 (717)
+||||+||++|+|++|+.||......+. ....... ..+ +.+..+- +...+....... .
T Consensus 223 ~DiwslG~il~ell~g~~pf~~~~~~~~-~~~i~~~~g~p~~~~~~~~~~~~~~~~~~~~~~~~~---~----------- 287 (383)
T 3eb0_A 223 IDLWSIGCVFGELILGKPLFSGETSIDQ-LVRIIQIMGTPTKEQMIRMNPHYTEVRFPTLKAKDW---R----------- 287 (383)
T ss_dssp HHHHHHHHHHHHHHHSSCSSCCSSHHHH-HHHHHHHHCCCCHHHHHHHCTTC--CCCCCCCCCCH---H-----------
T ss_pred hhhhhHHHHHHHHHhCCCCCCCCChHHH-HHHHHHHhCCCCHHHHHHhCcccccccCCccCcccH---H-----------
Confidence 9999999999999999999976433221 1111111 111 1111110 000000000000 0
Q ss_pred hhhhhcchhhhHHHHHHHHHHhhccCCCCcCCCCCHHHHHH--HHHHHHH
Q 005045 660 IDLEVNTKNKLEECFVSVLRIGLMCSTTSPRERIAMNVVVN--NLKTIRN 707 (717)
Q Consensus 660 ~~~~~~~~~~~~~~~~~l~~li~~cl~~~p~~Rps~~eil~--~l~~i~~ 707 (717)
...+..++..+.+++.+||+++|++|||+.|+++ .+..++.
T Consensus 288 -------~~~~~~~~~~~~~li~~~L~~dP~~R~t~~e~l~hp~f~~~~~ 330 (383)
T 3eb0_A 288 -------KILPEGTPSLAIDLLEQILRYEPDLRINPYEAMAHPFFDHLRN 330 (383)
T ss_dssp -------HHSCTTCCHHHHHHHHHHCCSSGGGSCCHHHHHTSGGGHHHHH
T ss_pred -------hhCCCCCCHHHHHHHHHHccCChhhCCCHHHHhcCHHHHHHHh
Confidence 0011223566889999999999999999999984 3444443
No 239
>2fst_X Mitogen-activated protein kinase 14; active mutants, lipids, MAP kinase insertion, autophosphorylation, transferase; HET: BOG; 1.45A {Homo sapiens} PDB: 2fso_X* 2fsl_X* 2fsm_X* 2npq_A* 2bal_A* 2baj_A* 2bak_A* 2baq_A* 2qd9_A* 1ian_A* 2rg5_A* 2rg6_A* 3bv2_A* 3bv3_A* 3bx5_A* 3c5u_A* 3cg2_A* 3l8x_A* 3mvl_A* 3mvm_A* ...
Probab=100.00 E-value=1.6e-37 Score=328.62 Aligned_cols=279 Identities=22% Similarity=0.291 Sum_probs=185.2
Q ss_pred ccccccccccccCcccccceEEEEeC-CCchhhhHHhHhh--hhhHHHHHHHHHHHHhcCCCCceeEEEEeecccc-CCC
Q 005045 386 KSTDNFSKENLIGTGSFGSVYKGTLG-DGTIVAIKVLKLQ--QQGALKSFIDECNALKSTRHRNILRVITACSSVD-LEG 461 (717)
Q Consensus 386 ~~~~~y~~~~~ig~g~~g~v~~~~~~-~~~~vavK~~~~~--~~~~~~~~~~e~~~l~~l~h~ni~~~~~~~~~~~-~~~ 461 (717)
...++|++.+.||+|+||.||+|.+. +|+.||+|++... .....+++.+|+++++.++||||+++++++.... ...
T Consensus 26 ~~~~~y~~~~~lG~G~~g~V~~a~~~~~~~~vaiK~~~~~~~~~~~~~~~~~E~~~l~~l~hpnIv~~~~~~~~~~~~~~ 105 (367)
T 2fst_X 26 EVPERYQNLSPVGSGAYGSVCAAFDTKTGLRVAVKKLSRPFQSIIHAKRTYRELRLLKHMKHENVIGLLDVFTPARSLEE 105 (367)
T ss_dssp EEETTEEEEEECC----CCEEEEEETTTTEEEEEEECSSTTSSHHHHHHHHHHHHHHHHCCCTTBCCCSEEECSCSSGGG
T ss_pred CCCCceEEeeEEeecCCeEEEEEEECCCCCEEEEEEeCccccCHHHHHHHHHHHHHHHhCCCCCCCcEEEEEecCCcccc
Confidence 34579999999999999999999954 7999999998643 2344577889999999999999999999875431 223
Q ss_pred CceEEEEEecCCCCChhhhccCCCCCcccccccCHHHHHHHHHHHHHHHHHHHhcCCCCeeecCCCCCCEEeCCCCceEE
Q 005045 462 NDFKALVFEFMSNGNLDQWLHPSPAEHYQFKKLSVIQRLNIAIDVASALDYLHHHCDTPIAHCDLKPSNVLLDKDMTAHV 541 (717)
Q Consensus 462 ~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~dlkp~NIll~~~~~~kl 541 (717)
....++|||++ +++|.+++.. ..+++..+..++.||+.||+|||+. ||+||||||+||+++.++.+||
T Consensus 106 ~~~~~lv~e~~-~~~L~~~~~~--------~~l~~~~~~~i~~qi~~aL~~LH~~---givH~Dlkp~NIll~~~~~~kL 173 (367)
T 2fst_X 106 FNDVYLVTHLM-GADLNNIVKC--------QKLTDDHVQFLIYQILRGLKYIHSA---DIIHRDLKPSNLAVNEDCELKI 173 (367)
T ss_dssp CCCCEEEEECC-CEECC-------------CCCCHHHHHHHHHHHHHHHHHHHHT---TCCCCCCCGGGEEECTTCCEEE
T ss_pred CCeEEEEeccc-CCCHHHHHhc--------CCCCHHHHHHHHHHHHHHHHHHHHC---CeeeCCCCHhhEEECCCCCEEE
Confidence 35689999999 7899988864 3589999999999999999999998 9999999999999999999999
Q ss_pred eeeccchhcccccCCCCCCcceeecccccccccCCCccCC--CCCcccchhhHHHHHHHHHhCCCCCCCCCCCchhhhHH
Q 005045 542 GDFGLAKFLFEISDNPSKNQTVSIGLKGSIGYIPPEHMNG--QVSILGDIYSYGILLLEMFTGKRPTGDMFKDDFSIHMF 619 (717)
Q Consensus 542 ~Dfg~~~~~~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~--~~~~~sDvwslG~vl~elltg~~p~~~~~~~~~~~~~~ 619 (717)
+|||.++.... ......||..|+|||++.+ .++.++|||||||++|+|++|+.||.+....+. +...
T Consensus 174 ~DFG~a~~~~~----------~~~~~~~t~~y~aPE~~~~~~~~~~~~DiwslG~il~ell~g~~pf~~~~~~~~-l~~i 242 (367)
T 2fst_X 174 LDFGLARHTAD----------EMTGYVATRWYRAPEIMLNWMHYNQTVDIWSVGCIMAELLTGRTLFPGTDHIDQ-LKLI 242 (367)
T ss_dssp CC-------------------------CCCTTCCHHHHTTCCSCCTTHHHHHHHHHHHHHHHSSCSCCCSSHHHH-HHHH
T ss_pred eeccccccccc----------cCCCcCcCcCccChHHHcCCcCCCchhhHHHHHHHHHHHHhCCCCCCCCCHHHH-HHHH
Confidence 99999986421 1234568999999999654 589999999999999999999999976432211 1111
Q ss_pred HHh-cCChhhhhhcCCCCCCCCCCcHHHHHHHHHHHHHHhhhhhhhcchhhhHHHHHHHHHHhhccCCCCcCCCCCHHHH
Q 005045 620 VSM-ALPDHVMDILDPSMPLDEENDEEQIEEVIEEKEMMIHIDLEVNTKNKLEECFVSVLRIGLMCSTTSPRERIAMNVV 698 (717)
Q Consensus 620 ~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~cl~~~p~~Rps~~ei 698 (717)
... ..+. .+.+... .......+...... .....-......++..+.+|+.+||+.||++|||+.|+
T Consensus 243 ~~~~g~p~--~~~~~~~-------~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~dLl~~mL~~dP~~R~t~~e~ 309 (367)
T 2fst_X 243 LRLVGTPG--AELLKKI-------SSESARNYIQSLTQ----MPKMNFANVFIGANPLAVDLLEKMLVLDSDKRITAAQA 309 (367)
T ss_dssp HHHHCSCC--HHHHTTC-------CCHHHHHHHHTSCC----CCCCCHHHHTTTCCHHHHHHHHHHSCSSGGGSCCHHHH
T ss_pred HHHhCCCC--HHHHHHh-------hhHHHHHHHhccCC----CCCCCHHHHCCCCCHHHHHHHHHhCCCCcccCcCHHHH
Confidence 110 0010 0000000 00000111100000 00000000111224567899999999999999999999
Q ss_pred HH
Q 005045 699 VN 700 (717)
Q Consensus 699 l~ 700 (717)
++
T Consensus 310 L~ 311 (367)
T 2fst_X 310 LA 311 (367)
T ss_dssp HT
T ss_pred hc
Confidence 86
No 240
>3com_A Serine/threonine-protein kinase 4; MST1, STE20-like kinase, PSI, structural genomics, protein structure initiative; HET: TPO; 2.20A {Homo sapiens}
Probab=100.00 E-value=1.7e-37 Score=322.61 Aligned_cols=251 Identities=25% Similarity=0.376 Sum_probs=193.4
Q ss_pred ccccccccccccCcccccceEEEEeC-CCchhhhHHhHhhhhhHHHHHHHHHHHHhcCCCCceeEEEEeeccccCCCCce
Q 005045 386 KSTDNFSKENLIGTGSFGSVYKGTLG-DGTIVAIKVLKLQQQGALKSFIDECNALKSTRHRNILRVITACSSVDLEGNDF 464 (717)
Q Consensus 386 ~~~~~y~~~~~ig~g~~g~v~~~~~~-~~~~vavK~~~~~~~~~~~~~~~e~~~l~~l~h~ni~~~~~~~~~~~~~~~~~ 464 (717)
...++|++.+.||+|+||.||.|.+. +|+.||+|.+.... ....+.+|++++++++||||+++++++.. .+.
T Consensus 26 ~~~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~vaiK~~~~~~--~~~~~~~e~~~l~~l~h~~i~~~~~~~~~-----~~~ 98 (314)
T 3com_A 26 QPEEVFDVLEKLGEGSYGSVYKAIHKETGQIVAIKQVPVES--DLQEIIKEISIMQQCDSPHVVKYYGSYFK-----NTD 98 (314)
T ss_dssp ----CEEEEEECC----CEEEEEEETTTCCEEEEEEEETTS--CCHHHHHHHHHHHTCCCTTBCCEEEEEEE-----TTE
T ss_pred cchhhhhhheeeccCCCeEEEEEEECCCCCEEEEEecCchH--HHHHHHHHHHHHHhCCCCCCccEEEEEEe-----CCE
Confidence 45678999999999999999999965 68999999987543 34678899999999999999999999643 458
Q ss_pred EEEEEecCCCCChhhhccCCCCCcccccccCHHHHHHHHHHHHHHHHHHHhcCCCCeeecCCCCCCEEeCCCCceEEeee
Q 005045 465 KALVFEFMSNGNLDQWLHPSPAEHYQFKKLSVIQRLNIAIDVASALDYLHHHCDTPIAHCDLKPSNVLLDKDMTAHVGDF 544 (717)
Q Consensus 465 ~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~dlkp~NIll~~~~~~kl~Df 544 (717)
.++||||+++++|.+++.... ..+++..+..++.||+.||.|||+. +++||||||+||+++.++.+||+||
T Consensus 99 ~~lv~e~~~~~~L~~~~~~~~------~~~~~~~~~~i~~~i~~~l~~lH~~---~i~H~dl~p~Nil~~~~~~~kl~df 169 (314)
T 3com_A 99 LWIVMEYCGAGSVSDIIRLRN------KTLTEDEIATILQSTLKGLEYLHFM---RKIHRDIKAGNILLNTEGHAKLADF 169 (314)
T ss_dssp EEEEEECCTTEEHHHHHHHHT------CCCCHHHHHHHHHHHHHHHHHHHHT---TEECCCCSGGGEEECTTCCEEECCC
T ss_pred EEEEeecCCCCCHHHHHHhcC------CCCCHHHHHHHHHHHHHHHHHHHhC---CCcCCCcCHHHEEECCCCCEEEeec
Confidence 899999999999999986321 5689999999999999999999998 9999999999999999999999999
Q ss_pred ccchhcccccCCCCCCcceeecccccccccCCCccCC-CCCcccchhhHHHHHHHHHhCCCCCCCCCCCchhhhHHHHhc
Q 005045 545 GLAKFLFEISDNPSKNQTVSIGLKGSIGYIPPEHMNG-QVSILGDIYSYGILLLEMFTGKRPTGDMFKDDFSIHMFVSMA 623 (717)
Q Consensus 545 g~~~~~~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~-~~~~~sDvwslG~vl~elltg~~p~~~~~~~~~~~~~~~~~~ 623 (717)
|.+...... ........|++.|+|||++.+ .++.++|||||||++|+|++|..||........ .......
T Consensus 170 g~~~~~~~~-------~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~g~~p~~~~~~~~~--~~~~~~~ 240 (314)
T 3com_A 170 GVAGQLTDT-------MAKRNTVIGTPFWMAPEVIQEIGYNCVADIWSLGITAIEMAEGKPPYADIHPMRA--IFMIPTN 240 (314)
T ss_dssp TTCEECBTT-------BSCBCCCCSCGGGCCHHHHSSSCBCTTHHHHHHHHHHHHHHHSSCTTTTSCHHHH--HHHHHHS
T ss_pred ccchhhhhh-------ccccCccCCCCCccChhhcCCCCCCccccHHHHHHHHHHHHhCCCCCCCCChHHH--HHHHhcC
Confidence 999765221 112233568999999999655 589999999999999999999999975422110 0000000
Q ss_pred CChhhhhhcCCCCCCCCCCcHHHHHHHHHHHHHHhhhhhhhcchhhhHHHHHHHHHHhhccCCCCcCCCCCHHHHHH
Q 005045 624 LPDHVMDILDPSMPLDEENDEEQIEEVIEEKEMMIHIDLEVNTKNKLEECFVSVLRIGLMCSTTSPRERIAMNVVVN 700 (717)
Q Consensus 624 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~cl~~~p~~Rps~~eil~ 700 (717)
..+.. ..+..++..+.+++.+||+.+|++|||+.|+++
T Consensus 241 --------~~~~~-------------------------------~~~~~~~~~l~~li~~~l~~dp~~Rpt~~~ll~ 278 (314)
T 3com_A 241 --------PPPTF-------------------------------RKPELWSDNFTDFVKQCLVKSPEQRATATQLLQ 278 (314)
T ss_dssp --------CCCCC-------------------------------SSGGGSCHHHHHHHHHHTCSCTTTSCCHHHHTT
T ss_pred --------CCccc-------------------------------CCcccCCHHHHHHHHHHccCChhhCcCHHHHHh
Confidence 00000 011223556889999999999999999999986
No 241
>2ycf_A Serine/threonine-protein kinase CHK2; transferase, anticancer, anticancer drug design; HET: YCF; 1.77A {Homo sapiens} PDB: 2yiq_A* 2w7x_A* 2ycq_A* 2ycs_A* 2w0j_A* 2yir_A* 2yit_A* 2wtj_A* 2cn8_A* 2wtc_A* 2wtd_A* 2wti_A* 2cn5_A* 2xbj_A* 2xm8_A* 2xm9_A* 2xk9_A* 2ycr_A*
Probab=100.00 E-value=2.1e-37 Score=322.91 Aligned_cols=251 Identities=22% Similarity=0.276 Sum_probs=193.4
Q ss_pred cccccccccccCcccccceEEEEeC-CCchhhhHHhHhhh--------hhHHHHHHHHHHHHhcCCCCceeEEEEeeccc
Q 005045 387 STDNFSKENLIGTGSFGSVYKGTLG-DGTIVAIKVLKLQQ--------QGALKSFIDECNALKSTRHRNILRVITACSSV 457 (717)
Q Consensus 387 ~~~~y~~~~~ig~g~~g~v~~~~~~-~~~~vavK~~~~~~--------~~~~~~~~~e~~~l~~l~h~ni~~~~~~~~~~ 457 (717)
..++|++.+.||+|+||.||+|.+. +++.||+|++.... ......+.+|++++++++||||+++++++..
T Consensus 8 l~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~- 86 (322)
T 2ycf_A 8 LRDEYIMSKTLGSGACGEVKLAFERKTCKKVAIKIISKRKFAIGSAREADPALNVETEIEILKKLNHPCIIKIKNFFDA- 86 (322)
T ss_dssp HHHHEEEEEEEEECSSEEEEEEEETTTTEEEEEEEECC---------------CHHHHHHHHHHCCCTTBCCEEEEEES-
T ss_pred hhhceeEeeEEecCCCEEEEEEEEcCCCcEEEEEEeehhhhhhcccccchhhhhHHHHHHHHHhCCCCCCceEeeEEcC-
Confidence 3568999999999999999999965 78999999885432 1223457899999999999999999998532
Q ss_pred cCCCCceEEEEEecCCCCChhhhccCCCCCcccccccCHHHHHHHHHHHHHHHHHHHhcCCCCeeecCCCCCCEEeCCCC
Q 005045 458 DLEGNDFKALVFEFMSNGNLDQWLHPSPAEHYQFKKLSVIQRLNIAIDVASALDYLHHHCDTPIAHCDLKPSNVLLDKDM 537 (717)
Q Consensus 458 ~~~~~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~dlkp~NIll~~~~ 537 (717)
. ..++||||+++++|.+++... ..+++..+..++.||+.||+|||+. +|+||||||+||+++.++
T Consensus 87 ----~-~~~lv~e~~~~~~L~~~~~~~-------~~~~~~~~~~~~~qi~~~l~~lH~~---~ivH~dlkp~NIl~~~~~ 151 (322)
T 2ycf_A 87 ----E-DYYIVLELMEGGELFDKVVGN-------KRLKEATCKLYFYQMLLAVQYLHEN---GIIHRDLKPENVLLSSQE 151 (322)
T ss_dssp ----S-SEEEEEECCTTEETHHHHSTT-------CCCCHHHHHHHHHHHHHHHHHHHHT---TEECCCCSGGGEEESSSS
T ss_pred ----C-ceEEEEecCCCCcHHHHHhcc-------CCCCHHHHHHHHHHHHHHHHHHHHC---CeeccCCCHHHEEEecCC
Confidence 2 379999999999999998754 5689999999999999999999998 999999999999998766
Q ss_pred c---eEEeeeccchhcccccCCCCCCcceeecccccccccCCCcc----CCCCCcccchhhHHHHHHHHHhCCCCCCCCC
Q 005045 538 T---AHVGDFGLAKFLFEISDNPSKNQTVSIGLKGSIGYIPPEHM----NGQVSILGDIYSYGILLLEMFTGKRPTGDMF 610 (717)
Q Consensus 538 ~---~kl~Dfg~~~~~~~~~~~~~~~~~~~~~~~~~~~y~aPE~~----~~~~~~~sDvwslG~vl~elltg~~p~~~~~ 610 (717)
. +||+|||.+.... .........|++.|+|||++ .+.++.++|||||||++|+|++|..||....
T Consensus 152 ~~~~~kl~Dfg~~~~~~--------~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~~~Di~slG~il~~l~~g~~pf~~~~ 223 (322)
T 2ycf_A 152 EDCLIKITDFGHSKILG--------ETSLMRTLCGTPTYLAPEVLVSVGTAGYNRAVDCWSLGVILFICLSGYPPFSEHR 223 (322)
T ss_dssp SSCCEEECCCTTCEECC--------CCHHHHHHHSCCTTCCHHHHHHTTTTTCTTHHHHHHHHHHHHHHHHSSCSSCSTT
T ss_pred CCCeEEEccCccceecc--------cccccccccCCcCccCchhhccCCCCCCCchhhHHHHHHHHHHHHhCCCCCcccc
Confidence 4 9999999997651 11122345689999999995 3457899999999999999999999997643
Q ss_pred CCchhhhHHHHhcCChhhhhhcCCCCCCCCCCcHHHHHHHHHHHHHHhhhhhhhcchhhhHHHHHHHHHHhhccCCCCcC
Q 005045 611 KDDFSIHMFVSMALPDHVMDILDPSMPLDEENDEEQIEEVIEEKEMMIHIDLEVNTKNKLEECFVSVLRIGLMCSTTSPR 690 (717)
Q Consensus 611 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~cl~~~p~ 690 (717)
............. ....+ ....+++..+.+++.+||+.+|+
T Consensus 224 ~~~~~~~~~~~~~------------~~~~~---------------------------~~~~~~~~~~~~li~~~l~~dP~ 264 (322)
T 2ycf_A 224 TQVSLKDQITSGK------------YNFIP---------------------------EVWAEVSEKALDLVKKLLVVDPK 264 (322)
T ss_dssp CSSCHHHHHHHTC------------CCCCH---------------------------HHHTTSCHHHHHHHHHHSCSSTT
T ss_pred hHHHHHHHHHhCc------------cccCc---------------------------hhhhhcCHHHHHHHHHHcccCHh
Confidence 3221111111000 00000 01112356788999999999999
Q ss_pred CCCCHHHHHH
Q 005045 691 ERIAMNVVVN 700 (717)
Q Consensus 691 ~Rps~~eil~ 700 (717)
+|||+.|+++
T Consensus 265 ~Rps~~~~l~ 274 (322)
T 2ycf_A 265 ARFTTEEALR 274 (322)
T ss_dssp TSCCHHHHHT
T ss_pred hCCCHHHHhh
Confidence 9999999984
No 242
>3fme_A Dual specificity mitogen-activated protein kinase; active mutant, structural genomics consortium, SCG, binding, nucleotide-binding, phosphoprotein; HET: STU; 2.26A {Homo sapiens} PDB: 3enm_A
Probab=100.00 E-value=1.6e-37 Score=318.91 Aligned_cols=256 Identities=21% Similarity=0.268 Sum_probs=186.1
Q ss_pred cccccccccccccCcccccceEEEEeC-CCchhhhHHhHhhh--hhHHHHHHHHHHHHhcCCCCceeEEEEeeccccCCC
Q 005045 385 SKSTDNFSKENLIGTGSFGSVYKGTLG-DGTIVAIKVLKLQQ--QGALKSFIDECNALKSTRHRNILRVITACSSVDLEG 461 (717)
Q Consensus 385 ~~~~~~y~~~~~ig~g~~g~v~~~~~~-~~~~vavK~~~~~~--~~~~~~~~~e~~~l~~l~h~ni~~~~~~~~~~~~~~ 461 (717)
....++|++.+.||+|+||.||+|.+. +++.||+|++.... ....+.+.++...++.+.||||+++++++. .
T Consensus 3 ~i~~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~~~~~~~~~h~~iv~~~~~~~-----~ 77 (290)
T 3fme_A 3 EVKADDLEPIMELGRGAYGVVEKMRHVPSGQIMAVKRIRATVNSQEQKRLLMDLDISMRTVDCPFTVTFYGALF-----R 77 (290)
T ss_dssp CCCGGGEEEEEEEEECSSEEEEEEEETTTTEEEEEEEEC---CHHHHHHHHHHHHHHHTTCCCTTBCCEEEEEE-----C
T ss_pred cccHHhhhhHHhcCCCCCeEEEEEEecCCCeEEEEEEeecccCcHHHHHHHHHHHHHHHhCCCCeEEEEeeeee-----c
Confidence 456789999999999999999999964 89999999986542 223344555666688889999999999964 4
Q ss_pred CceEEEEEecCCCCChhhhccCCCCCcccccccCHHHHHHHHHHHHHHHHHHHhcCCCCeeecCCCCCCEEeCCCCceEE
Q 005045 462 NDFKALVFEFMSNGNLDQWLHPSPAEHYQFKKLSVIQRLNIAIDVASALDYLHHHCDTPIAHCDLKPSNVLLDKDMTAHV 541 (717)
Q Consensus 462 ~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~dlkp~NIll~~~~~~kl 541 (717)
.+..++||||++ +++.+++..... ....+++..+..++.||+.|++|||+.+ +++||||||+||+++.++.+||
T Consensus 78 ~~~~~lv~e~~~-~~l~~~l~~~~~---~~~~~~~~~~~~i~~qi~~~l~~lH~~~--~i~H~dlkp~Nil~~~~~~~kl 151 (290)
T 3fme_A 78 EGDVWICMELMD-TSLDKFYKQVID---KGQTIPEDILGKIAVSIVKALEHLHSKL--SVIHRDVKPSNVLINALGQVKM 151 (290)
T ss_dssp SSSEEEEEECCS-EEHHHHHHHHHH---TTCCCCHHHHHHHHHHHHHHHHHHHHHS--CCCCCCCSGGGCEECTTCCEEB
T ss_pred cCCEEEEEehhc-cchHHHHHHHHh---cCCCCCHHHHHHHHHHHHHHHHHHhhcC--CeecCCCCHHHEEECCCCCEEE
Confidence 458999999996 588777653100 1156899999999999999999999852 8999999999999999999999
Q ss_pred eeeccchhcccccCCCCCCcceeecccccccccCCCccC-----CCCCcccchhhHHHHHHHHHhCCCCCCCCCCCchhh
Q 005045 542 GDFGLAKFLFEISDNPSKNQTVSIGLKGSIGYIPPEHMN-----GQVSILGDIYSYGILLLEMFTGKRPTGDMFKDDFSI 616 (717)
Q Consensus 542 ~Dfg~~~~~~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~-----~~~~~~sDvwslG~vl~elltg~~p~~~~~~~~~~~ 616 (717)
+|||.+...... .......|++.|+|||++. +.++.++|||||||++|+|++|..||..........
T Consensus 152 ~Dfg~~~~~~~~--------~~~~~~~~t~~y~aPE~~~~~~~~~~~~~~~Di~slG~il~~l~~g~~p~~~~~~~~~~~ 223 (290)
T 3fme_A 152 CDFGISGYLVDD--------VAKDIDAGCKPYMAPERINPELNQKGYSVKSDIWSLGITMIELAILRFPYDSWGTPFQQL 223 (290)
T ss_dssp CCC-----------------------CCCCCCSCHHHHSCCTTC--CCHHHHHHHHHHHHHHHHHTSCSSCCCSCHHHHH
T ss_pred eecCCccccccc--------ccccccCCCccccChhhcChhhcCcCCCcHHHHHHHHHHHHHHHHCCCCccccCchHHHH
Confidence 999999765211 1122345899999999952 247899999999999999999999997543322222
Q ss_pred hHHHHhcCChhhhhhcCCCCCCCCCCcHHHHHHHHHHHHHHhhhhhhhcchhhhHHHHHHHHHHhhccCCCCcCCCCCHH
Q 005045 617 HMFVSMALPDHVMDILDPSMPLDEENDEEQIEEVIEEKEMMIHIDLEVNTKNKLEECFVSVLRIGLMCSTTSPRERIAMN 696 (717)
Q Consensus 617 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~cl~~~p~~Rps~~ 696 (717)
........ ... ....++..+.+++.+||+.+|++|||+.
T Consensus 224 ~~~~~~~~------------~~~-----------------------------~~~~~~~~~~~li~~~l~~~p~~Rpt~~ 262 (290)
T 3fme_A 224 KQVVEEPS------------PQL-----------------------------PADKFSAEFVDFTSQCLKKNSKERPTYP 262 (290)
T ss_dssp HHHHHSCC------------CCC-----------------------------CTTTSCHHHHHHHHHHTCSSGGGSCCHH
T ss_pred HHHhccCC------------CCc-----------------------------ccccCCHHHHHHHHHHhhcChhhCcCHH
Confidence 11111110 000 0011255678999999999999999999
Q ss_pred HHHH
Q 005045 697 VVVN 700 (717)
Q Consensus 697 eil~ 700 (717)
|+++
T Consensus 263 e~l~ 266 (290)
T 3fme_A 263 ELMQ 266 (290)
T ss_dssp HHTT
T ss_pred HHHh
Confidence 9987
No 243
>2r3i_A Cell division protein kinase 2; serine/threonine-protein kinase, cell cycle, inhibition, cyclin-dependent kinase, cancer, ATP-binding; HET: SCF; 1.28A {Homo sapiens} PDB: 2r3j_A* 2r3k_A* 2r3l_A* 2r3m_A* 2r3n_A* 2r3o_A* 2r3p_A* 2r3q_A* 1jvp_P* 1buh_A 1ckp_A* 1di8_A* 1dm2_A* 1f5q_A 1fin_A* 1fq1_B* 1fvt_A* 1fvv_A* 1g5s_A* 1gih_A* ...
Probab=100.00 E-value=2.5e-37 Score=318.95 Aligned_cols=270 Identities=25% Similarity=0.366 Sum_probs=197.5
Q ss_pred ccccccccccCcccccceEEEEeC-CCchhhhHHhHhhh--hhHHHHHHHHHHHHhcCCCCceeEEEEeeccccCCCCce
Q 005045 388 TDNFSKENLIGTGSFGSVYKGTLG-DGTIVAIKVLKLQQ--QGALKSFIDECNALKSTRHRNILRVITACSSVDLEGNDF 464 (717)
Q Consensus 388 ~~~y~~~~~ig~g~~g~v~~~~~~-~~~~vavK~~~~~~--~~~~~~~~~e~~~l~~l~h~ni~~~~~~~~~~~~~~~~~ 464 (717)
.++|++.+.||+|++|.||.|+++ +|+.||+|++.... ......+.+|++++++++||||+++++++. ..+.
T Consensus 2 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~-----~~~~ 76 (299)
T 2r3i_A 2 MENFQKVEKIGEGTYGVVYKARNKLTGEVVALKKIRLDTETEGVPSTAIREISLLKELNHPNIVKLLDVIH-----TENK 76 (299)
T ss_dssp CTTEEEEEEEEECSSSEEEEEEETTTCCEEEEEEC--------CCHHHHHHHHHHTTCCCTTBCCEEEEEE-----ETTE
T ss_pred cchhhhhhhhccCCCeeEEEEEEcCCCceEEEEEeecCccchhhHHHHHHHHHHHHHcCCCCeeeEEEEEe-----cCCc
Confidence 368999999999999999999976 78999999987543 223467889999999999999999999954 3458
Q ss_pred EEEEEecCCCCChhhhccCCCCCcccccccCHHHHHHHHHHHHHHHHHHHhcCCCCeeecCCCCCCEEeCCCCceEEeee
Q 005045 465 KALVFEFMSNGNLDQWLHPSPAEHYQFKKLSVIQRLNIAIDVASALDYLHHHCDTPIAHCDLKPSNVLLDKDMTAHVGDF 544 (717)
Q Consensus 465 ~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~dlkp~NIll~~~~~~kl~Df 544 (717)
.++||||++ ++|.+++..... ..+++..+..++.||+.||+|||+. |++||||||+||+++.++.+||+||
T Consensus 77 ~~lv~e~~~-~~L~~~~~~~~~-----~~~~~~~~~~~~~~i~~~l~~lH~~---~i~H~dlkp~Nili~~~~~~kl~df 147 (299)
T 2r3i_A 77 LYLVFEFLH-QDLKKFMDASAL-----TGIPLPLIKSYLFQLLQGLAFCHSH---RVLHRDLKPQNLLINTEGAIKLADF 147 (299)
T ss_dssp EEEEEECCS-EEHHHHHHHTTT-----TCCCHHHHHHHHHHHHHHHHHHHHT---TCCCCCCCGGGEEECTTSCEEECST
T ss_pred eEEEEEccc-CCHHHHHHhhhc-----cCCCHHHHHHHHHHHHHHHHHHHHC---CccCCCCCHHHeEEcCCCCEEECcc
Confidence 999999996 699998875421 4588999999999999999999998 9999999999999999999999999
Q ss_pred ccchhcccccCCCCCCcceeecccccccccCCCccCCC--CCcccchhhHHHHHHHHHhCCCCCCCCCCCchhhhHHHHh
Q 005045 545 GLAKFLFEISDNPSKNQTVSIGLKGSIGYIPPEHMNGQ--VSILGDIYSYGILLLEMFTGKRPTGDMFKDDFSIHMFVSM 622 (717)
Q Consensus 545 g~~~~~~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~--~~~~sDvwslG~vl~elltg~~p~~~~~~~~~~~~~~~~~ 622 (717)
|.+...... ........+++.|+|||++.+. ++.++|||||||++|+|++|..||......+.........
T Consensus 148 g~~~~~~~~-------~~~~~~~~~~~~y~aPE~~~~~~~~~~~~Di~slG~~l~~l~~g~~pf~~~~~~~~~~~~~~~~ 220 (299)
T 2r3i_A 148 GLARAFGVP-------VRTYTHEVVTLWYRAPEILLGAKYYSTAVDIWSLGCIFAEMVTRRALFPGDSEIDQLFRIFRTL 220 (299)
T ss_dssp THHHHHCCC-------SBCTTSCBCCCTTCCHHHHTTCSSCCTHHHHHHHHHHHHHHHHSSCSCCCSSHHHHHHHHHHHH
T ss_pred hhhhhccCC-------ccccCcccccccccCcHHhhccccCChHHHHHHHHHHHHHHHhCCCCCCCccHHHHHHHHHHHh
Confidence 999875211 1112234578999999997553 7899999999999999999999997653322111111111
Q ss_pred cCChh--hhhh-----cCCCCCCCCCCcHHHHHHHHHHHHHHhhhhhhhcchhhhHHHHHHHHHHhhccCCCCcCCCCCH
Q 005045 623 ALPDH--VMDI-----LDPSMPLDEENDEEQIEEVIEEKEMMIHIDLEVNTKNKLEECFVSVLRIGLMCSTTSPRERIAM 695 (717)
Q Consensus 623 ~~~~~--~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~cl~~~p~~Rps~ 695 (717)
..+.. +... ..+..+....... . ......+..+.+++.+||+.||++|||+
T Consensus 221 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~-------------------~~~~~~~~~~~~li~~~L~~dP~~Rpt~ 278 (299)
T 2r3i_A 221 GTPDEVVWPGVTSMPDYKPSFPKWARQDF---S-------------------KVVPPLDEDGRSLLSQMLHYDPNKRISA 278 (299)
T ss_dssp CCCCTTTSTTGGGSTTCCTTSCCCCCCCH---H-------------------HHSTTCCHHHHHHHHHHTCSSTTTSCCH
T ss_pred CCCchhhhhHhhcCcccchhhhcccchhh---H-------------------hhCCCCCHHHHHHHHHhcCcCcccCCCH
Confidence 11110 0000 0011110000000 0 0111235567899999999999999999
Q ss_pred HHHHH
Q 005045 696 NVVVN 700 (717)
Q Consensus 696 ~eil~ 700 (717)
.|+++
T Consensus 279 ~~~l~ 283 (299)
T 2r3i_A 279 KAALA 283 (299)
T ss_dssp HHHHT
T ss_pred HHHhc
Confidence 99986
No 244
>2xrw_A Mitogen-activated protein kinase 8; transcription, MAPK signaling pathways, linear binding motif; HET: ANP; 1.33A {Homo sapiens} PDB: 1ukh_A 1uki_A* 2xs0_A* 3elj_A* 2h96_A* 2gmx_A* 2g01_A* 2no3_A* 3o2m_A* 3o17_A* 3pze_A* 3g9l_X* 2p33_A* 3cgf_A* 3cgo_A* 3g90_X* 2ok1_A* 3g9n_A* 1pmn_A* 1pmq_A* ...
Probab=100.00 E-value=4.4e-37 Score=326.66 Aligned_cols=202 Identities=27% Similarity=0.282 Sum_probs=162.7
Q ss_pred cccccccccccCcccccceEEEEeC-CCchhhhHHhHhh--hhhHHHHHHHHHHHHhcCCCCceeEEEEeecccc-CCCC
Q 005045 387 STDNFSKENLIGTGSFGSVYKGTLG-DGTIVAIKVLKLQ--QQGALKSFIDECNALKSTRHRNILRVITACSSVD-LEGN 462 (717)
Q Consensus 387 ~~~~y~~~~~ig~g~~g~v~~~~~~-~~~~vavK~~~~~--~~~~~~~~~~e~~~l~~l~h~ni~~~~~~~~~~~-~~~~ 462 (717)
..++|++.+.||+|+||.||+|.+. +++.||+|++... .....+.+.+|+.+++.++||||+++++++.... ....
T Consensus 23 ~~~~y~~~~~lG~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~hpniv~~~~~~~~~~~~~~~ 102 (371)
T 2xrw_A 23 VLKRYQNLKPIGSGAQGIVCAAYDAILERNVAIKKLSRPFQNQTHAKRAYRELVLMKCVNHKNIIGLLNVFTPQKSLEEF 102 (371)
T ss_dssp EETTEEEEEEEEECSSEEEEEEEETTTTEEEEEEEEECTTSSHHHHHHHHHHHHHHHHCCCTTBCCEEEEECSCCSTTTC
T ss_pred hhhheeEeeeeEecCCEEEEEEEECCCCceEEEEEeccccCChHHHHHHHHHHHHHHhcCCCCccceEEeeccccccccc
Confidence 3579999999999999999999965 7899999998643 2344577889999999999999999999875432 2334
Q ss_pred ceEEEEEecCCCCChhhhccCCCCCcccccccCHHHHHHHHHHHHHHHHHHHhcCCCCeeecCCCCCCEEeCCCCceEEe
Q 005045 463 DFKALVFEFMSNGNLDQWLHPSPAEHYQFKKLSVIQRLNIAIDVASALDYLHHHCDTPIAHCDLKPSNVLLDKDMTAHVG 542 (717)
Q Consensus 463 ~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~dlkp~NIll~~~~~~kl~ 542 (717)
...++||||++ +++.+++. ..+++..+..++.||+.||+|||+. +|+||||||+||+++.++.+||+
T Consensus 103 ~~~~lv~e~~~-~~l~~~~~---------~~~~~~~~~~i~~qi~~al~~lH~~---~ivH~Dlkp~NIl~~~~~~~kl~ 169 (371)
T 2xrw_A 103 QDVYIVMELMD-ANLCQVIQ---------MELDHERMSYLLYQMLCGIKHLHSA---GIIHRDLKPSNIVVKSDCTLKIL 169 (371)
T ss_dssp CEEEEEEECCS-EEHHHHHH---------SCCCHHHHHHHHHHHHHHHHHHHHT---TCCCSCCCGGGEEECTTSCEEEC
T ss_pred cceEEEEEcCC-CCHHHHHh---------hccCHHHHHHHHHHHHHHHHHHHHC---CeecccCCHHHEEEcCCCCEEEE
Confidence 47899999996 57888875 3478999999999999999999998 99999999999999999999999
Q ss_pred eeccchhcccccCCCCCCcceeecccccccccCCCccCC-CCCcccchhhHHHHHHHHHhCCCCCCCC
Q 005045 543 DFGLAKFLFEISDNPSKNQTVSIGLKGSIGYIPPEHMNG-QVSILGDIYSYGILLLEMFTGKRPTGDM 609 (717)
Q Consensus 543 Dfg~~~~~~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~-~~~~~sDvwslG~vl~elltg~~p~~~~ 609 (717)
|||.+..... ........||+.|+|||++.+ .++.++|||||||++|+|++|..||...
T Consensus 170 Dfg~a~~~~~--------~~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~el~~g~~pf~~~ 229 (371)
T 2xrw_A 170 DFGLARTAGT--------SFMMTPYVVTRYYRAPEVILGMGYKENVDIWSVGCIMGEMIKGGVLFPGT 229 (371)
T ss_dssp CCCC------------------------CTTCCHHHHTTCCCCTTHHHHHHHHHHHHHHHSSCSSCCS
T ss_pred Eeeccccccc--------ccccCCceecCCccCHHHhcCCCCCchHhHHHHHHHHHHHHhCCCCCCCC
Confidence 9999986521 112234568999999999655 5899999999999999999999999764
No 245
>3a7i_A MST3 kinase, serine/threonine kinase 24 (STE20 homolog, yeast); two-LOBE protein kinase fold, ATP-binding, nucleotid binding, transferase; HET: TPO ADE; 1.45A {Homo sapiens} PDB: 3a7g_A* 3a7h_A* 3a7f_A* 3a7j_A* 3ckw_A 3ckx_A* 3ggf_A* 2xik_A*
Probab=100.00 E-value=3.6e-37 Score=318.33 Aligned_cols=251 Identities=23% Similarity=0.381 Sum_probs=201.0
Q ss_pred ccccccccccccCcccccceEEEEeC-CCchhhhHHhHhhh-hhHHHHHHHHHHHHhcCCCCceeEEEEeeccccCCCCc
Q 005045 386 KSTDNFSKENLIGTGSFGSVYKGTLG-DGTIVAIKVLKLQQ-QGALKSFIDECNALKSTRHRNILRVITACSSVDLEGND 463 (717)
Q Consensus 386 ~~~~~y~~~~~ig~g~~g~v~~~~~~-~~~~vavK~~~~~~-~~~~~~~~~e~~~l~~l~h~ni~~~~~~~~~~~~~~~~ 463 (717)
...+.|++.+.||+|++|.||.|.+. +++.||+|++.... ....+.+.+|+.+++++.||||+++++++.. ..
T Consensus 19 ~~~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~-----~~ 93 (303)
T 3a7i_A 19 DPEELFTKLEKIGKGSFGEVFKGIDNRTQKVVAIKIIDLEEAEDEIEDIQQEITVLSQCDSPYVTKYYGSYLK-----DT 93 (303)
T ss_dssp CGGGTEEEEEEEEECSSSEEEEEEETTTCCEEEEEEEETTTCSTTHHHHHHHHHHHHHCCCTTBCCEEEEEEE-----TT
T ss_pred ChHHHHHHhhhhcccCCeEEEEEEECCCCcEEEEEEecccccHHHHHHHHHHHHHHHhCCCCCEeEEEEEEec-----CC
Confidence 34567999999999999999999964 78999999986543 3346788999999999999999999998643 45
Q ss_pred eEEEEEecCCCCChhhhccCCCCCcccccccCHHHHHHHHHHHHHHHHHHHhcCCCCeeecCCCCCCEEeCCCCceEEee
Q 005045 464 FKALVFEFMSNGNLDQWLHPSPAEHYQFKKLSVIQRLNIAIDVASALDYLHHHCDTPIAHCDLKPSNVLLDKDMTAHVGD 543 (717)
Q Consensus 464 ~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~dlkp~NIll~~~~~~kl~D 543 (717)
..++||||+++++|.+++.. ..+++..+..++.||+.||+|||+. +++||||||+||+++.++.+||+|
T Consensus 94 ~~~lv~e~~~~~~L~~~~~~--------~~~~~~~~~~~~~qi~~~l~~lH~~---~i~H~dl~p~Nil~~~~~~~kl~D 162 (303)
T 3a7i_A 94 KLWIIMEYLGGGSALDLLEP--------GPLDETQIATILREILKGLDYLHSE---KKIHRDIKAANVLLSEHGEVKLAD 162 (303)
T ss_dssp EEEEEEECCTTEEHHHHHTT--------SCCCHHHHHHHHHHHHHHHHHHHHT---TEECCCCSGGGEEECTTSCEEECC
T ss_pred eEEEEEEeCCCCcHHHHHhc--------CCCCHHHHHHHHHHHHHHHHHHHHC---CCccCCCChheEEECCCCCEEEee
Confidence 89999999999999999864 3589999999999999999999998 999999999999999999999999
Q ss_pred eccchhcccccCCCCCCcceeecccccccccCCCccCC-CCCcccchhhHHHHHHHHHhCCCCCCCCCCCchhhhHHHHh
Q 005045 544 FGLAKFLFEISDNPSKNQTVSIGLKGSIGYIPPEHMNG-QVSILGDIYSYGILLLEMFTGKRPTGDMFKDDFSIHMFVSM 622 (717)
Q Consensus 544 fg~~~~~~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~-~~~~~sDvwslG~vl~elltg~~p~~~~~~~~~~~~~~~~~ 622 (717)
||.+...... ........|++.|+|||++.+ .++.++|||||||++|+|++|..||....... ......
T Consensus 163 fg~~~~~~~~-------~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~g~~p~~~~~~~~--~~~~~~- 232 (303)
T 3a7i_A 163 FGVAGQLTDT-------QIKRNTFVGTPFWMAPEVIKQSAYDSKADIWSLGITAIELARGEPPHSELHPMK--VLFLIP- 232 (303)
T ss_dssp CTTCEECBTT-------BCCBCCCCSCGGGCCHHHHTTCCBCTHHHHHHHHHHHHHHHHSSCTTTTSCHHH--HHHHHH-
T ss_pred cccceecCcc-------ccccCccCCCcCccCHHHHhcCCCCchhhhHHHHHHHHHHccCCCCCCCcCHHH--HHHHhh-
Confidence 9999765221 112234568999999999655 57999999999999999999999996542211 111110
Q ss_pred cCChhhhhhcCCCCCCCCCCcHHHHHHHHHHHHHHhhhhhhhcchhhhHHHHHHHHHHhhccCCCCcCCCCCHHHHHHHH
Q 005045 623 ALPDHVMDILDPSMPLDEENDEEQIEEVIEEKEMMIHIDLEVNTKNKLEECFVSVLRIGLMCSTTSPRERIAMNVVVNNL 702 (717)
Q Consensus 623 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~cl~~~p~~Rps~~eil~~l 702 (717)
....+... ..++..+.+++.+||+.+|++|||+.|+++..
T Consensus 233 -------~~~~~~~~---------------------------------~~~~~~l~~li~~~l~~dp~~Rps~~~ll~~~ 272 (303)
T 3a7i_A 233 -------KNNPPTLE---------------------------------GNYSKPLKEFVEACLNKEPSFRPTAKELLKHK 272 (303)
T ss_dssp -------HSCCCCCC---------------------------------SSCCHHHHHHHHHHCCSSGGGSCCHHHHTTCH
T ss_pred -------cCCCCCCc---------------------------------cccCHHHHHHHHHHcCCChhhCcCHHHHhhCh
Confidence 00001111 11245678999999999999999999998753
No 246
>3pfq_A PKC-B, PKC-beta, protein kinase C beta type; phosphorylation, transferase; HET: TPO SEP ANP; 4.00A {Rattus norvegicus} PDB: 1tbn_A 1tbo_A 2e73_A
Probab=100.00 E-value=4.8e-37 Score=349.30 Aligned_cols=249 Identities=22% Similarity=0.316 Sum_probs=199.0
Q ss_pred ccccccccccccCcccccceEEEEeC-CCchhhhHHhHhh---hhhHHHHHHHHHHHHhcC-CCCceeEEEEeeccccCC
Q 005045 386 KSTDNFSKENLIGTGSFGSVYKGTLG-DGTIVAIKVLKLQ---QQGALKSFIDECNALKST-RHRNILRVITACSSVDLE 460 (717)
Q Consensus 386 ~~~~~y~~~~~ig~g~~g~v~~~~~~-~~~~vavK~~~~~---~~~~~~~~~~e~~~l~~l-~h~ni~~~~~~~~~~~~~ 460 (717)
...++|++.+.||+|+||.||+|+++ +++.||+|++... .......+..|..++..+ +||+|+.++++ +.
T Consensus 338 ~~~~~f~~~~~LG~G~fG~V~~~~~~~~~~~vAvK~l~~~~~~~~~~~~~~~~E~~~l~~~~~~~~i~~l~~~-----~~ 412 (674)
T 3pfq_A 338 MKLTDFNFLMVLGKGSFGKVMLSERKGTDELYAVKILKKDVVIQDDDVECTMVEKRVLALPGKPPFLTQLHSC-----FQ 412 (674)
T ss_dssp --CTTEEEEEESSBTTTBCEEEEEESSSCCEEEEEEEEHHHHHHTTTTHHHHHHHHHHTCTTCCTTBCCEEEE-----CB
T ss_pred ccccceEEEEEEccCCCEEEEEEEECCCCcEEEEEEEeccccccHHHHHHHHHHHHHHHhccCCCeEEEEEEE-----EE
Confidence 34678999999999999999999965 7888999998743 233456788899999988 79999999998 55
Q ss_pred CCceEEEEEecCCCCChhhhccCCCCCcccccccCHHHHHHHHHHHHHHHHHHHhcCCCCeeecCCCCCCEEeCCCCceE
Q 005045 461 GNDFKALVFEFMSNGNLDQWLHPSPAEHYQFKKLSVIQRLNIAIDVASALDYLHHHCDTPIAHCDLKPSNVLLDKDMTAH 540 (717)
Q Consensus 461 ~~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~dlkp~NIll~~~~~~k 540 (717)
+.+..|+||||+++|+|.+++... ..+++..++.++.||+.||+|||+. +|+||||||+|||++.+|.+|
T Consensus 413 ~~~~~~lV~E~~~gg~L~~~l~~~-------~~~~~~~~~~~~~qi~~aL~~LH~~---gIiHrDLKp~NILl~~~g~ik 482 (674)
T 3pfq_A 413 TMDRLYFVMEYVNGGDLMYHIQQV-------GRFKEPHAVFYAAEIAIGLFFLQSK---GIIYRDLKLDNVMLDSEGHIK 482 (674)
T ss_dssp CSSEEEEEEECCCSCBHHHHHHHH-------SSCCHHHHHHHHHHHHHHHHHHHHT---SEECCCCCSTTEEECSSSCEE
T ss_pred eCCEEEEEEeCcCCCcHHHHHHhc-------CCCCHHHHHHHHHHHHHHHHHHHhC---CeEeccCChhhEEEcCCCcEE
Confidence 667899999999999999999754 5689999999999999999999998 999999999999999999999
Q ss_pred EeeeccchhcccccCCCCCCcceeecccccccccCCCccCC-CCCcccchhhHHHHHHHHHhCCCCCCCCCCCchhhhHH
Q 005045 541 VGDFGLAKFLFEISDNPSKNQTVSIGLKGSIGYIPPEHMNG-QVSILGDIYSYGILLLEMFTGKRPTGDMFKDDFSIHMF 619 (717)
Q Consensus 541 l~Dfg~~~~~~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~-~~~~~sDvwslG~vl~elltg~~p~~~~~~~~~~~~~~ 619 (717)
|+|||+++.... .........||+.|+|||++.+ .++.++|||||||++|||++|..||...... ..
T Consensus 483 L~DFGla~~~~~-------~~~~~~~~~GT~~Y~APE~l~~~~~~~~~DvwSlGvilyelltG~~Pf~~~~~~--~~--- 550 (674)
T 3pfq_A 483 IADFGMCKENIW-------DGVTTKTFCGTPDYIAPEIIAYQPYGKSVDWWAFGVLLYEMLAGQAPFEGEDED--EL--- 550 (674)
T ss_dssp ECCCTTCEECCC-------TTCCBCCCCSCSSSCCHHHHTCCCBSTHHHHHHHHHHHHHHHHSSCSSCCSSHH--HH---
T ss_pred Eeecceeecccc-------CCcccccccCCCcccCHhhhcCCCCCccceEechHHHHHHHHcCCCCCCCCCHH--HH---
Confidence 999999975311 1122345679999999999765 5899999999999999999999999764221 11
Q ss_pred HHhcCChhhhhhcCCCCCCCCCCcHHHHHHHHHHHHHHhhhhhhhcchhhhHHHHHHHHHHhhccCCCCcCCCCCH----
Q 005045 620 VSMALPDHVMDILDPSMPLDEENDEEQIEEVIEEKEMMIHIDLEVNTKNKLEECFVSVLRIGLMCSTTSPRERIAM---- 695 (717)
Q Consensus 620 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~cl~~~p~~Rps~---- 695 (717)
...+........ ...+..+.+++.+||+.+|++||++
T Consensus 551 --------~~~i~~~~~~~p-------------------------------~~~s~~~~~li~~lL~~dP~~R~~~~~~~ 591 (674)
T 3pfq_A 551 --------FQSIMEHNVAYP-------------------------------KSMSKEAVAICKGLMTKHPGKRLGCGPEG 591 (674)
T ss_dssp --------HHHHHSSCCCCC-------------------------------TTSCHHHHHHHHHHSCSSSTTCTTCSTTH
T ss_pred --------HHHHHhCCCCCC-------------------------------ccCCHHHHHHHHHHccCCHHHCCCCCCCc
Confidence 111111111111 1124567889999999999999997
Q ss_pred -HHHHH
Q 005045 696 -NVVVN 700 (717)
Q Consensus 696 -~eil~ 700 (717)
+||++
T Consensus 592 ~~ei~~ 597 (674)
T 3pfq_A 592 ERDIKE 597 (674)
T ss_dssp HHHHHS
T ss_pred HHHHhc
Confidence 66653
No 247
>3an0_A Dual specificity mitogen-activated protein kinase; auto inhibition state, activation helix, serine/threonine-PR kinase; HET: ANK; 2.60A {Homo sapiens} PDB: 3vn9_A*
Probab=100.00 E-value=2.3e-37 Score=325.33 Aligned_cols=259 Identities=20% Similarity=0.289 Sum_probs=196.5
Q ss_pred ccccccccccccccccCcccccceEEEEe-CCCchhhhHHhHhhh-hhHHHHHHHHHHH-HhcCCCCceeEEEEeecccc
Q 005045 382 SDISKSTDNFSKENLIGTGSFGSVYKGTL-GDGTIVAIKVLKLQQ-QGALKSFIDECNA-LKSTRHRNILRVITACSSVD 458 (717)
Q Consensus 382 ~~~~~~~~~y~~~~~ig~g~~g~v~~~~~-~~~~~vavK~~~~~~-~~~~~~~~~e~~~-l~~l~h~ni~~~~~~~~~~~ 458 (717)
.+.....++|++.+.||+|+||.||+|.+ .+|+.||+|++.... ......+..|+.+ ++.++||||+++++++.
T Consensus 44 ~~~~~~~~~~~~~~~lG~G~~g~Vy~~~~~~~~~~vavK~~~~~~~~~~~~~~~~e~~~~~~~~~h~~iv~~~~~~~--- 120 (340)
T 3an0_A 44 QNFEVKADDLEPIMELGRGAYGVVEKMRHVPSGQIMAVKRIRATVNSQEQKRLLMDLDISMRTVDCPFTVTFYGALF--- 120 (340)
T ss_dssp CCCCCCSSCEEEEEEEEECSSEEEEEEEETTTTEEEEEEEECSCCCCHHHHHHHHHHHHHHTTCCCTTTCCEEEEEE---
T ss_pred cceEEehhheeEeeEecccCCEEEEEEEEcCCCCEEEEEEeccccCcHHHHHHHHHHHHHHhhcCCCcEEEEeeEEE---
Confidence 34556788999999999999999999996 489999999986542 2233445555555 77789999999999964
Q ss_pred CCCCceEEEEEecCCCCChhhhccCCCCCcccccccCHHHHHHHHHHHHHHHHHHHhcCCCCeeecCCCCCCEEeCCCCc
Q 005045 459 LEGNDFKALVFEFMSNGNLDQWLHPSPAEHYQFKKLSVIQRLNIAIDVASALDYLHHHCDTPIAHCDLKPSNVLLDKDMT 538 (717)
Q Consensus 459 ~~~~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~dlkp~NIll~~~~~ 538 (717)
..+..++||||+++ +|.+++..... ....+++..+..++.||+.||+|||+. .+|+||||||+||+++.++.
T Consensus 121 --~~~~~~lv~e~~~~-~L~~~l~~~~~---~~~~l~~~~~~~i~~qi~~~l~~lH~~--~~ivH~Dlkp~NIl~~~~~~ 192 (340)
T 3an0_A 121 --REGDVWICMELMDT-SLDKFYKQVID---KGQTIPEDILGKIAVSIVKALEHLHSK--LSVIHRDVKPSNVLINALGQ 192 (340)
T ss_dssp --CSSCEEEEECCCSE-EHHHHHHHHHH---TSCCCCHHHHHHHHHHHHHHHHHHHHH--TCCCCCSCCSTTEEECSTTC
T ss_pred --eCCcEEEEHHHhhC-cHHHHHHHHHh---cCCCCCHHHHHHHHHHHHHHHHHHhhc--CCeecCCCCHHHEEECCCCC
Confidence 34589999999975 99888753100 115689999999999999999999974 28999999999999999999
Q ss_pred eEEeeeccchhcccccCCCCCCcceeecccccccccCCCccCC-----CCCcccchhhHHHHHHHHHhCCCCCCCCCCCc
Q 005045 539 AHVGDFGLAKFLFEISDNPSKNQTVSIGLKGSIGYIPPEHMNG-----QVSILGDIYSYGILLLEMFTGKRPTGDMFKDD 613 (717)
Q Consensus 539 ~kl~Dfg~~~~~~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~-----~~~~~sDvwslG~vl~elltg~~p~~~~~~~~ 613 (717)
+||+|||.+..... ........||+.|+|||++.+ .++.++|||||||++|+|++|..||.......
T Consensus 193 ~kl~Dfg~~~~~~~--------~~~~~~~~gt~~y~aPE~~~~~~~~~~~~~~~Di~slG~il~el~tg~~p~~~~~~~~ 264 (340)
T 3an0_A 193 VKMCDFGISGYLVD--------SVAKTIDAGCKPYMAPERINPELNQKGYSVKSDIWSLGITMIELAILRFPYDSWGTPF 264 (340)
T ss_dssp EEECCCSHHHHHSC--------HHHHHHSSCCCCCCCHHHHSCCTTCCSCCHHHHHHHHHHHHHHHHHTSCSSCCCSCHH
T ss_pred EEEeeCCCceeccc--------ccccccCCCCccccCccccccccccCCCCchhhHHHHHHHHHHHHHCCCCCccccchH
Confidence 99999999987521 111223468999999999643 47899999999999999999999997543221
Q ss_pred hhhhHHHHhcCChhhhhhcCCCCCCCCCCcHHHHHHHHHHHHHHhhhhhhhcchhhhHHHHHHHHHHhhccCCCCcCCCC
Q 005045 614 FSIHMFVSMALPDHVMDILDPSMPLDEENDEEQIEEVIEEKEMMIHIDLEVNTKNKLEECFVSVLRIGLMCSTTSPRERI 693 (717)
Q Consensus 614 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~cl~~~p~~Rp 693 (717)
........ ...... ....++..+.+++.+||+.+|++||
T Consensus 265 ~~~~~~~~------------~~~~~~-----------------------------~~~~~~~~~~~li~~~l~~dp~~Rp 303 (340)
T 3an0_A 265 QQLKQVVE------------EPSPQL-----------------------------PADKFSAEFVDFTSQCLKKNSKERP 303 (340)
T ss_dssp HHHHHHHH------------SCCCCC-----------------------------CGGGSCHHHHHHHHHHTCSSGGGSC
T ss_pred HHHHHHhc------------CCCCCC-----------------------------CcccCCHHHHHHHHHHccCCcccCc
Confidence 11111111 000000 0112356688999999999999999
Q ss_pred CHHHHHH
Q 005045 694 AMNVVVN 700 (717)
Q Consensus 694 s~~eil~ 700 (717)
|+.|+++
T Consensus 304 s~~ell~ 310 (340)
T 3an0_A 304 TYPELMQ 310 (340)
T ss_dssp CHHHHTT
T ss_pred CHHHHhc
Confidence 9999987
No 248
>3lm5_A Serine/threonine-protein kinase 17B; STK17B, serine/threonine kinase 17B, DRAK2, DAP kinase relat apoptosis-inducing protein kinase 2; HET: QUE; 2.29A {Homo sapiens} PDB: 3lm0_A*
Probab=100.00 E-value=3.1e-37 Score=322.14 Aligned_cols=263 Identities=18% Similarity=0.273 Sum_probs=202.0
Q ss_pred CCCcccccccccccccc-cccCcccccceEEEEeC-CCchhhhHHhHhhh--hhHHHHHHHHHHHHhcC-CCCceeEEEE
Q 005045 378 GMSYSDISKSTDNFSKE-NLIGTGSFGSVYKGTLG-DGTIVAIKVLKLQQ--QGALKSFIDECNALKST-RHRNILRVIT 452 (717)
Q Consensus 378 ~~s~~~~~~~~~~y~~~-~~ig~g~~g~v~~~~~~-~~~~vavK~~~~~~--~~~~~~~~~e~~~l~~l-~h~ni~~~~~ 452 (717)
...+.......++|.+. +.||+|+||.||+|.++ +++.||+|++.... ......+.+|+.+++.+ .||||+++++
T Consensus 17 n~~~~~~~~~~~~y~~~~~~lG~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~e~~~l~~l~~~~~iv~~~~ 96 (327)
T 3lm5_A 17 NLYFQSMENFNNFYILTSKELGRGKFAVVRQCISKSTGQEYAAKFLKKRRRGQDCRAEILHEIAVLELAKSCPRVINLHE 96 (327)
T ss_dssp CCCSBCHHHHHHHEEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEESEETTEECHHHHHHHHHHHHHTTTCTTBCCEEE
T ss_pred hhHHHHHHhhhhEEeeccceeCCCCCeEEEEEEECCCCCEEEEEEEehhhcchHHHHHHHHHHHHHHhccCCCCEEEEEE
Confidence 34455556667888888 89999999999999965 79999999987542 23357788999999999 5699999999
Q ss_pred eeccccCCCCceEEEEEecCCCCChhhhccCCCCCcccccccCHHHHHHHHHHHHHHHHHHHhcCCCCeeecCCCCCCEE
Q 005045 453 ACSSVDLEGNDFKALVFEFMSNGNLDQWLHPSPAEHYQFKKLSVIQRLNIAIDVASALDYLHHHCDTPIAHCDLKPSNVL 532 (717)
Q Consensus 453 ~~~~~~~~~~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~dlkp~NIl 532 (717)
++ ...+..++||||+++++|.+++..... ..+++..++.++.||+.||+|||+. ||+||||||+||+
T Consensus 97 ~~-----~~~~~~~lv~e~~~~~~L~~~~~~~~~-----~~~~~~~~~~i~~ql~~~L~~LH~~---givH~Dikp~NIl 163 (327)
T 3lm5_A 97 VY-----ENTSEIILILEYAAGGEIFSLCLPELA-----EMVSENDVIRLIKQILEGVYYLHQN---NIVHLDLKPQNIL 163 (327)
T ss_dssp EE-----ECSSEEEEEEECCTTEEGGGGGSSCC------CCCCHHHHHHHHHHHHHHHHHHHHT---TEECSCCCGGGEE
T ss_pred EE-----EeCCeEEEEEEecCCCcHHHHHHHhcc-----cCCCHHHHHHHHHHHHHHHHHHHHC---CeecCcCChHHEE
Confidence 95 445689999999999999999865421 5689999999999999999999998 9999999999999
Q ss_pred eCC---CCceEEeeeccchhcccccCCCCCCcceeecccccccccCCCccCC-CCCcccchhhHHHHHHHHHhCCCCCCC
Q 005045 533 LDK---DMTAHVGDFGLAKFLFEISDNPSKNQTVSIGLKGSIGYIPPEHMNG-QVSILGDIYSYGILLLEMFTGKRPTGD 608 (717)
Q Consensus 533 l~~---~~~~kl~Dfg~~~~~~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~-~~~~~sDvwslG~vl~elltg~~p~~~ 608 (717)
++. ++.+||+|||.+...... .......|++.|+|||++.+ .++.++|||||||++|+|++|..||..
T Consensus 164 ~~~~~~~~~~kL~Dfg~a~~~~~~--------~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~~ll~g~~pf~~ 235 (327)
T 3lm5_A 164 LSSIYPLGDIKIVDFGMSRKIGHA--------CELREIMGTPEYLAPEILNYDPITTATDMWNIGIIAYMLLTHTSPFVG 235 (327)
T ss_dssp ESCBTTBCCEEECCGGGCEEC-----------------CCCGGGCCHHHHTTCCCCTHHHHHHHHHHHHHHHHSSCSSCC
T ss_pred EecCCCCCcEEEeeCccccccCCc--------cccccccCCcCccCCeeecCCCCCchhhHHHHHHHHHHHHhCCCCCCC
Confidence 987 789999999999865211 11233568999999999765 589999999999999999999999965
Q ss_pred CCCCchhhhHHHHhcCChhhhhhcCCCCCCCCCCcHHHHHHHHHHHHHHhhhhhhhcchhhhHHHHHHHHHHhhccCCCC
Q 005045 609 MFKDDFSIHMFVSMALPDHVMDILDPSMPLDEENDEEQIEEVIEEKEMMIHIDLEVNTKNKLEECFVSVLRIGLMCSTTS 688 (717)
Q Consensus 609 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~cl~~~ 688 (717)
...... ....... ...... +....++..+.+++.+||+.+
T Consensus 236 ~~~~~~--~~~i~~~---------~~~~~~-----------------------------~~~~~~~~~~~~li~~~L~~d 275 (327)
T 3lm5_A 236 EDNQET--YLNISQV---------NVDYSE-----------------------------ETFSSVSQLATDFIQSLLVKN 275 (327)
T ss_dssp SSHHHH--HHHHHHT---------CCCCCT-----------------------------TTTTTSCHHHHHHHHHHSCSS
T ss_pred CCchHH--HHHHHhc---------ccccCc-----------------------------hhhcccCHHHHHHHHHHcCCC
Confidence 422111 0000000 000000 011123556789999999999
Q ss_pred cCCCCCHHHHHHH
Q 005045 689 PRERIAMNVVVNN 701 (717)
Q Consensus 689 p~~Rps~~eil~~ 701 (717)
|++|||++|+++.
T Consensus 276 P~~Rpt~~~ll~h 288 (327)
T 3lm5_A 276 PEKRPTAEICLSH 288 (327)
T ss_dssp GGGSCCHHHHTTC
T ss_pred hhhCcCHHHHhCC
Confidence 9999999999853
No 249
>2pml_X PFPK7, Ser/Thr protein kinase; phosphorylati transferase, transferase; HET: ANP; 2.60A {Plasmodium falciparum} PDB: 2pmn_X* 2pmo_X*
Probab=100.00 E-value=2.2e-37 Score=326.62 Aligned_cols=266 Identities=20% Similarity=0.278 Sum_probs=201.9
Q ss_pred ccccccccccccCcccccceEEEEeCCCchhhhHHhHhhhhhH-----------------HHHHHHHHHHHhcCCCCcee
Q 005045 386 KSTDNFSKENLIGTGSFGSVYKGTLGDGTIVAIKVLKLQQQGA-----------------LKSFIDECNALKSTRHRNIL 448 (717)
Q Consensus 386 ~~~~~y~~~~~ig~g~~g~v~~~~~~~~~~vavK~~~~~~~~~-----------------~~~~~~e~~~l~~l~h~ni~ 448 (717)
...++|++.+.||+|+||.||+|.+ +++.||+|++....... ...+.+|++++++++||||+
T Consensus 28 ~~~~~y~~~~~lg~G~~g~V~~~~~-~~~~vavK~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~~i~ 106 (348)
T 2pml_X 28 KYINDYRIIRTLNQGKFNKIILCEK-DNKFYALKKYEKSLLEKKRDFTKSNNDKISIKSKYDDFKNELQIITDIKNEYCL 106 (348)
T ss_dssp EEETTEEEEEEEECCSSCCEEEEEE-TTEEEEEEEEEHHHHSSCEEECCCSSSSCCEEEHHHHHHHHHHHHTTCCCTTBC
T ss_pred cccCceEEEEEEcCCCCeEEEEEEc-CCceEEEEEeecccccchhhhccccchhhhHHhHHHHHHHHHHHHHhCCCCCcc
Confidence 4467999999999999999999999 89999999987553221 17889999999999999999
Q ss_pred EEEEeeccccCCCCceEEEEEecCCCCChhhh------ccCCCCCcccccccCHHHHHHHHHHHHHHHHHHHh-cCCCCe
Q 005045 449 RVITACSSVDLEGNDFKALVFEFMSNGNLDQW------LHPSPAEHYQFKKLSVIQRLNIAIDVASALDYLHH-HCDTPI 521 (717)
Q Consensus 449 ~~~~~~~~~~~~~~~~~~lv~e~~~~~~L~~~------l~~~~~~~~~~~~~~~~~~~~i~~~i~~~l~~LH~-~~~~~i 521 (717)
++++++. +.+..++||||+++++|.++ +.... ...+++..+..++.||+.||+|||+ . |+
T Consensus 107 ~~~~~~~-----~~~~~~lv~e~~~~~~L~~~~~~~~~l~~~~-----~~~~~~~~~~~i~~qi~~~l~~lH~~~---~i 173 (348)
T 2pml_X 107 TCEGIIT-----NYDEVYIIYEYMENDSILKFDEYFFVLDKNY-----TCFIPIQVIKCIIKSVLNSFSYIHNEK---NI 173 (348)
T ss_dssp CCSEEEE-----SSSEEEEEEECCTTCBSSEESSSEESSCSSS-----CCCCCHHHHHHHHHHHHHHHHHHHHTS---CE
T ss_pred eEEEEEe-----eCCeEEEEEeccCCCcHHHHHHHhhhhhhcc-----ccCCCHHHHHHHHHHHHHHHHHHhccC---CE
Confidence 9999954 34589999999999999999 54321 2678999999999999999999999 7 99
Q ss_pred eecCCCCCCEEeCCCCceEEeeeccchhcccccCCCCCCcceeecccccccccCCCccCCC--CCc-ccchhhHHHHHHH
Q 005045 522 AHCDLKPSNVLLDKDMTAHVGDFGLAKFLFEISDNPSKNQTVSIGLKGSIGYIPPEHMNGQ--VSI-LGDIYSYGILLLE 598 (717)
Q Consensus 522 vH~dlkp~NIll~~~~~~kl~Dfg~~~~~~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~--~~~-~sDvwslG~vl~e 598 (717)
+||||+|+||+++.++.+||+|||.+..... .......|+..|+|||++.+. ++. ++|||||||++|+
T Consensus 174 ~H~dl~p~Nil~~~~~~~kl~dfg~~~~~~~---------~~~~~~~~~~~y~aPE~~~~~~~~~~~~~Di~slG~il~~ 244 (348)
T 2pml_X 174 CHRDVKPSNILMDKNGRVKLSDFGESEYMVD---------KKIKGSRGTYEFMPPEFFSNESSYNGAKVDIWSLGICLYV 244 (348)
T ss_dssp ECCCCCGGGEEECTTSCEEECCCTTCEECBT---------TEECSSCSCGGGCCGGGGSSCCCEEHHHHHHHHHHHHHHH
T ss_pred eecCCChHhEEEcCCCcEEEecccccccccc---------ccccCCCCCcCccCchhhcCCCCCCcchhhHHHHHHHHHH
Confidence 9999999999999999999999999986521 133445689999999997664 444 9999999999999
Q ss_pred HHhCCCCCCCCCCCchhhhHHHHhcC--ChhhhhhcCCCCCCCCCCcHHHHHHHHHHHHHHhhhhhhhcchhhhHHHHHH
Q 005045 599 MFTGKRPTGDMFKDDFSIHMFVSMAL--PDHVMDILDPSMPLDEENDEEQIEEVIEEKEMMIHIDLEVNTKNKLEECFVS 676 (717)
Q Consensus 599 lltg~~p~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 676 (717)
|++|..||.................. +........+..... .......++..
T Consensus 245 l~~g~~pf~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~--------------------------~~~~~~~~~~~ 298 (348)
T 2pml_X 245 MFYNVVPFSLKISLVELFNNIRTKNIEYPLDRNHFLYPLTNKK--------------------------STCSNNFLSNE 298 (348)
T ss_dssp HHHSSCSSCCSSCSHHHHHHHTSCCCCCCCSSSSSTTTTCC----------------------------------CCCHH
T ss_pred HHhCCCCCCCCCcHHHHHHHHhccCcCCccchhhhhccccccc--------------------------cccchhhcCHH
Confidence 99999999765432221111111110 100000000000000 00011223567
Q ss_pred HHHHhhccCCCCcCCCCCHHHHHH
Q 005045 677 VLRIGLMCSTTSPRERIAMNVVVN 700 (717)
Q Consensus 677 l~~li~~cl~~~p~~Rps~~eil~ 700 (717)
+.+++.+||+.+|++|||+.|+++
T Consensus 299 l~~li~~~L~~dP~~Rps~~e~l~ 322 (348)
T 2pml_X 299 DIDFLKLFLRKNPAERITSEDALK 322 (348)
T ss_dssp HHHHHHHHCCSSGGGSCCHHHHHT
T ss_pred HHHHHHHHccCChhhCCCHHHHhc
Confidence 889999999999999999999986
No 250
>2i6l_A Mitogen-activated protein kinase 6; MAPK6, ERK3, extracellular signal regulated kinase 3, serine phosphorylation, threonine phosphorylation; 2.25A {Homo sapiens}
Probab=100.00 E-value=1.8e-37 Score=323.26 Aligned_cols=280 Identities=20% Similarity=0.259 Sum_probs=197.1
Q ss_pred cccccccccccCcccccceEEEEeC-CCchhhhHHhHhhhhhHHHHHHHHHHHHhcCCCCceeEEEEeecccc-------
Q 005045 387 STDNFSKENLIGTGSFGSVYKGTLG-DGTIVAIKVLKLQQQGALKSFIDECNALKSTRHRNILRVITACSSVD------- 458 (717)
Q Consensus 387 ~~~~y~~~~~ig~g~~g~v~~~~~~-~~~~vavK~~~~~~~~~~~~~~~e~~~l~~l~h~ni~~~~~~~~~~~------- 458 (717)
..++|++.+.||+|++|.||+|.+. +++.||+|++........+.+.+|++++++++||||+++++++....
T Consensus 9 ~~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~~~~~~~ 88 (320)
T 2i6l_A 9 LGSRYMDLKPLGCGGNGLVFSAVDNDCDKRVAIKKIVLTDPQSVKHALREIKIIRRLDHDNIVKVFEILGPSGSQLTDDV 88 (320)
T ss_dssp ETTTEEEEEECC-----CEEEEEETTTTEEEEEEEEECCSHHHHHHHHHHHHHHHTCCCTTBCCEEEEECTTSCBCCC--
T ss_pred cCCceeEEEEeccCCCeEEEEEEECCCCeEEEEEEEecCChHHHHHHHHHHHHHHhcCCCCeeEEEEecccccccccccc
Confidence 4579999999999999999999976 69999999987666666788899999999999999999998864321
Q ss_pred --CCCCceEEEEEecCCCCChhhhccCCCCCcccccccCHHHHHHHHHHHHHHHHHHHhcCCCCeeecCCCCCCEEeC-C
Q 005045 459 --LEGNDFKALVFEFMSNGNLDQWLHPSPAEHYQFKKLSVIQRLNIAIDVASALDYLHHHCDTPIAHCDLKPSNVLLD-K 535 (717)
Q Consensus 459 --~~~~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~dlkp~NIll~-~ 535 (717)
.......++||||++ ++|.+++.. ..+++..++.++.||+.||+|||+. +|+||||||+||+++ .
T Consensus 89 ~~~~~~~~~~lv~e~~~-~~L~~~~~~--------~~~~~~~~~~~~~qi~~~l~~lH~~---~i~H~dlkp~Nil~~~~ 156 (320)
T 2i6l_A 89 GSLTELNSVYIVQEYME-TDLANVLEQ--------GPLLEEHARLFMYQLLRGLKYIHSA---NVLHRDLKPANLFINTE 156 (320)
T ss_dssp --CCSCSEEEEEEECCS-EEHHHHHTT--------CCCCHHHHHHHHHHHHHHHHHHHHT---TCBCCCCSGGGEEEETT
T ss_pred ccccccCceeEEeeccC-CCHHHHhhc--------CCccHHHHHHHHHHHHHHHHHHHhC---CEecCCCCHHHEEEcCC
Confidence 234568899999997 699999864 3588999999999999999999998 999999999999997 5
Q ss_pred CCceEEeeeccchhcccccCCCCCCcceeecccccccccCCCccC--CCCCcccchhhHHHHHHHHHhCCCCCCCCCCCc
Q 005045 536 DMTAHVGDFGLAKFLFEISDNPSKNQTVSIGLKGSIGYIPPEHMN--GQVSILGDIYSYGILLLEMFTGKRPTGDMFKDD 613 (717)
Q Consensus 536 ~~~~kl~Dfg~~~~~~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~--~~~~~~sDvwslG~vl~elltg~~p~~~~~~~~ 613 (717)
++.+||+|||.+........ .........++..|+|||++. +.++.++|||||||++|+|++|..||.......
T Consensus 157 ~~~~kl~Dfg~~~~~~~~~~----~~~~~~~~~~~~~y~aPE~~~~~~~~~~~~Di~slG~il~el~~g~~pf~~~~~~~ 232 (320)
T 2i6l_A 157 DLVLKIGDFGLARIMDPHYS----HKGHLSEGLVTKWYRSPRLLLSPNNYTKAIDMWAAGCIFAEMLTGKTLFAGAHELE 232 (320)
T ss_dssp TTEEEECCCTTCBCC------------CCCGGGSCCTTCCHHHHHCTTCCCHHHHHHHHHHHHHHHHHSSCSSCCSSHHH
T ss_pred CCeEEEccCccccccCCCcc----cccccccccccccccCcHHhcCcccCCchhhhHhHHHHHHHHHhCCCCCCCCCHHH
Confidence 67999999999986522111 111223345788999999853 458999999999999999999999997653211
Q ss_pred hhhhHHHHhcCChh----hhhhcCCCCCCCCCCcHHHHHHHHHHHHHHhhhhhhhcchhhhHHHHHHHHHHhhccCCCCc
Q 005045 614 FSIHMFVSMALPDH----VMDILDPSMPLDEENDEEQIEEVIEEKEMMIHIDLEVNTKNKLEECFVSVLRIGLMCSTTSP 689 (717)
Q Consensus 614 ~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~cl~~~p 689 (717)
.........+.. ..++... .+ ..... . ..............++..+.+++.+||+.+|
T Consensus 233 --~~~~~~~~~~~~~~~~~~~~~~~-~~-----------~~~~~---~-~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP 294 (320)
T 2i6l_A 233 --QMQLILESIPVVHEEDRQELLSV-IP-----------VYIRN---D-MTEPHKPLTQLLPGISREAVDFLEQILTFSP 294 (320)
T ss_dssp --HHHHHHHHSCCCCHHHHHHHHTT-SC-----------HHHHH---H-TTSCCCCHHHHSTTCCHHHHHHHHTTSCSSG
T ss_pred --HHHHHHHhcCCCchhhhhhhhhc-Cc-----------ccccc---c-ccCCCCChhHhcchhhHHHHHHHHHHcCCCc
Confidence 111111111100 0000000 00 00000 0 0000000001112346778999999999999
Q ss_pred CCCCCHHHHHH
Q 005045 690 RERIAMNVVVN 700 (717)
Q Consensus 690 ~~Rps~~eil~ 700 (717)
++|||++|+++
T Consensus 295 ~~Rpt~~ell~ 305 (320)
T 2i6l_A 295 MDRLTAEEALS 305 (320)
T ss_dssp GGSCCHHHHHT
T ss_pred cccCCHHHHhC
Confidence 99999999986
No 251
>2wtk_C Serine/threonine-protein kinase 11; transferase-metal-binding protein complex, transferase metal protein complex, nucleus; HET: ANP; 2.65A {Homo sapiens}
Probab=100.00 E-value=8.2e-37 Score=315.97 Aligned_cols=254 Identities=23% Similarity=0.337 Sum_probs=195.9
Q ss_pred cccccccccccCcccccceEEEEeC-CCchhhhHHhHhhh----hhHHHHHHHHHHHHhcCCCCceeEEEEeeccccCCC
Q 005045 387 STDNFSKENLIGTGSFGSVYKGTLG-DGTIVAIKVLKLQQ----QGALKSFIDECNALKSTRHRNILRVITACSSVDLEG 461 (717)
Q Consensus 387 ~~~~y~~~~~ig~g~~g~v~~~~~~-~~~~vavK~~~~~~----~~~~~~~~~e~~~l~~l~h~ni~~~~~~~~~~~~~~ 461 (717)
..++|++.+.||+|+||.||.|.+. +++.||+|++.... ......+.+|++++++++||||+++++++.. .+
T Consensus 3 l~~~y~i~~~lg~G~~g~V~~~~~~~~~~~~avK~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~---~~ 79 (305)
T 2wtk_C 3 LIGKYLMGDLLGEGSYGKVKEVLDSETLCRRAVKILKKKKLRRIPNGEANVKKEIQLLRRLRHKNVIQLVDVLYN---EE 79 (305)
T ss_dssp --CCBCCCCEEEECSSCEEEEEEBTTTCCEEEEEEECHHHHHHSTTHHHHHHHHHHHHTTCCCTTBCCEEEEEEC---C-
T ss_pred cccceeEeeEEecCCCeEEEEEEECCCCcEEEEEEeccccccccchhHHHHHHHHHHHHhcCCCCeeEEEEEEEc---CC
Confidence 3578999999999999999999965 78899999986542 2345788999999999999999999998632 34
Q ss_pred CceEEEEEecCCCCChhhhccCCCCCcccccccCHHHHHHHHHHHHHHHHHHHhcCCCCeeecCCCCCCEEeCCCCceEE
Q 005045 462 NDFKALVFEFMSNGNLDQWLHPSPAEHYQFKKLSVIQRLNIAIDVASALDYLHHHCDTPIAHCDLKPSNVLLDKDMTAHV 541 (717)
Q Consensus 462 ~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~dlkp~NIll~~~~~~kl 541 (717)
....++||||++++ +.+++..... ..+++..+..++.||+.||+|||+. +++||||||+||+++.++.+||
T Consensus 80 ~~~~~lv~e~~~~~-l~~~~~~~~~-----~~~~~~~~~~~~~qi~~al~~LH~~---~i~H~dlkp~NIl~~~~~~~kl 150 (305)
T 2wtk_C 80 KQKMYMVMEYCVCG-MQEMLDSVPE-----KRFPVCQAHGYFCQLIDGLEYLHSQ---GIVHKDIKPGNLLLTTGGTLKI 150 (305)
T ss_dssp --CEEEEEECCSEE-HHHHHHHSTT-----CSCCHHHHHHHHHHHHHHHHHHHHT---TEECSCCSGGGEEECTTCCEEE
T ss_pred CCeEEEEehhccCC-HHHHHHhCcc-----cccCHHHHHHHHHHHHHHHHHHHHC---CeeecCCCcccEEEcCCCcEEe
Confidence 55789999999765 7776654321 5689999999999999999999998 9999999999999999999999
Q ss_pred eeeccchhcccccCCCCCCcceeecccccccccCCCccCCC---CCcccchhhHHHHHHHHHhCCCCCCCCCCCchhhhH
Q 005045 542 GDFGLAKFLFEISDNPSKNQTVSIGLKGSIGYIPPEHMNGQ---VSILGDIYSYGILLLEMFTGKRPTGDMFKDDFSIHM 618 (717)
Q Consensus 542 ~Dfg~~~~~~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~---~~~~sDvwslG~vl~elltg~~p~~~~~~~~~~~~~ 618 (717)
+|||.+...... ..........|++.|+|||++.+. ++.++|||||||++|+|++|..||...... ....
T Consensus 151 ~dfg~~~~~~~~-----~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~~~Di~slG~il~~l~~g~~p~~~~~~~--~~~~ 223 (305)
T 2wtk_C 151 SALGVAEALHPF-----AADDTCRTSQGSPAFQPPEIANGLDTFSGFKVDIWSAGVTLYNITTGLYPFEGDNIY--KLFE 223 (305)
T ss_dssp CCCTTCEECCTT-----CSSCEECCCCSCGGGCCHHHHTCCSCEESHHHHHHHHHHHHHHHHHSSCSCCCSSHH--HHHH
T ss_pred eccccccccCcc-----ccccccccCCCCCCCcChhhccCcccCCcchhhHHHHHHHHHHHHhCCCCCCCchHH--HHHH
Confidence 999999765211 112223345689999999997653 478999999999999999999999753211 1111
Q ss_pred HHHhcCChhhhhhcCCCCCCCCCCcHHHHHHHHHHHHHHhhhhhhhcchhhhHHHHHHHHHHhhccCCCCcCCCCCHHHH
Q 005045 619 FVSMALPDHVMDILDPSMPLDEENDEEQIEEVIEEKEMMIHIDLEVNTKNKLEECFVSVLRIGLMCSTTSPRERIAMNVV 698 (717)
Q Consensus 619 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~cl~~~p~~Rps~~ei 698 (717)
.... .... .+.+++..+.+++.+||+.+|++|||++|+
T Consensus 224 ~i~~-----------~~~~-------------------------------~~~~~~~~l~~li~~~l~~dp~~Rps~~~l 261 (305)
T 2wtk_C 224 NIGK-----------GSYA-------------------------------IPGDCGPPLSDLLKGMLEYEPAKRFSIRQI 261 (305)
T ss_dssp HHHH-----------CCCC-------------------------------CCSSSCHHHHHHHHHHTCSSTTTSCCHHHH
T ss_pred HHhc-----------CCCC-------------------------------CCCccCHHHHHHHHHHccCChhhCCCHHHH
Confidence 1000 0000 111225567899999999999999999999
Q ss_pred HHH
Q 005045 699 VNN 701 (717)
Q Consensus 699 l~~ 701 (717)
++.
T Consensus 262 l~~ 264 (305)
T 2wtk_C 262 RQH 264 (305)
T ss_dssp HHS
T ss_pred hcC
Confidence 874
No 252
>4fl3_A Tyrosine-protein kinase SYK; transferase; HET: ANP; 1.90A {Homo sapiens} PDB: 4fl2_A* 1a81_A* 1csy_A* 1csz_A*
Probab=100.00 E-value=2.2e-37 Score=349.64 Aligned_cols=252 Identities=24% Similarity=0.375 Sum_probs=196.4
Q ss_pred cccCcccccceEEEEe---CCCchhhhHHhHhhh--hhHHHHHHHHHHHHhcCCCCceeEEEEeeccccCCCCceEEEEE
Q 005045 395 NLIGTGSFGSVYKGTL---GDGTIVAIKVLKLQQ--QGALKSFIDECNALKSTRHRNILRVITACSSVDLEGNDFKALVF 469 (717)
Q Consensus 395 ~~ig~g~~g~v~~~~~---~~~~~vavK~~~~~~--~~~~~~~~~e~~~l~~l~h~ni~~~~~~~~~~~~~~~~~~~lv~ 469 (717)
++||+|+||.||+|.+ +.++.||||+++... ....+.+.+|++++++++||||+++++++.. +..++||
T Consensus 375 ~~LG~G~fG~Vy~~~~~~~~~~~~vAvK~~~~~~~~~~~~~~~~~E~~il~~l~hpnIv~l~~~~~~------~~~~lv~ 448 (635)
T 4fl3_A 375 KELGSGNFGTVKKGYYQMKKVVKTVAVKILKNEANDPALKDELLAEANVMQQLDNPYIVRMIGICEA------ESWMLVM 448 (635)
T ss_dssp EEEEECSSEEEEEEEEECSSCEEEEEEEEECGGGGCGGGHHHHHHHHHHHHHCCCTTBCCEEEEEES------SSEEEEE
T ss_pred CEeccCCCEEEEEEEEcCCCcceEEEEEEeccccCCHHHHHHHHHHHHHHHhCCCCCEeeEEEEEec------CCEEEEE
Confidence 4799999999999964 257889999987543 3346789999999999999999999998632 3578999
Q ss_pred ecCCCCChhhhccCCCCCcccccccCHHHHHHHHHHHHHHHHHHHhcCCCCeeecCCCCCCEEeCCCCceEEeeeccchh
Q 005045 470 EFMSNGNLDQWLHPSPAEHYQFKKLSVIQRLNIAIDVASALDYLHHHCDTPIAHCDLKPSNVLLDKDMTAHVGDFGLAKF 549 (717)
Q Consensus 470 e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~dlkp~NIll~~~~~~kl~Dfg~~~~ 549 (717)
||+++++|.+++... ..+++..+..++.||+.||+|||+. +|+||||||+||+++.++.+||+|||+++.
T Consensus 449 E~~~~g~L~~~l~~~-------~~l~~~~~~~i~~qi~~~L~yLH~~---~iiHrDLkp~NILl~~~~~~kL~DFGla~~ 518 (635)
T 4fl3_A 449 EMAELGPLNKYLQQN-------RHVKDKNIIELVHQVSMGMKYLEES---NFVHRDLAARNVLLVTQHYAKISDFGLSKA 518 (635)
T ss_dssp ECCTTEEHHHHHHHC-------TTCCHHHHHHHHHHHHHHHHHHHHT---TCCCSCCSGGGEEEEETTEEEECCTTHHHH
T ss_pred EccCCCCHHHHHhhC-------CCCCHHHHHHHHHHHHHHHHHHHHC---CEeCCCCChHhEEEeCCCCEEEEEcCCccc
Confidence 999999999999754 5689999999999999999999998 999999999999999999999999999987
Q ss_pred cccccCCCCCCcceeecccccccccCCCccCC-CCCcccchhhHHHHHHHHHh-CCCCCCCCCCCchhhhHHHHhcCChh
Q 005045 550 LFEISDNPSKNQTVSIGLKGSIGYIPPEHMNG-QVSILGDIYSYGILLLEMFT-GKRPTGDMFKDDFSIHMFVSMALPDH 627 (717)
Q Consensus 550 ~~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~-~~~~~sDvwslG~vl~ellt-g~~p~~~~~~~~~~~~~~~~~~~~~~ 627 (717)
..... ..........++..|+|||++.+ .++.++|||||||++|||++ |..||......+ ....+...
T Consensus 519 ~~~~~----~~~~~~~~~~~t~~y~APE~~~~~~~~~~sDvwSlGv~l~ellt~G~~Pf~~~~~~~--~~~~i~~~---- 588 (635)
T 4fl3_A 519 LRADE----NYYKAQTHGKWPVKWYAPECINYYKFSSKSDVWSFGVLMWEAFSYGQKPYRGMKGSE--VTAMLEKG---- 588 (635)
T ss_dssp TTC-----------------CGGGSCHHHHHHCCCCHHHHHHHHHHHHHHHHTTTCCSSTTCCHHH--HHHHHHTT----
T ss_pred cccCc----cccccccCCCCceeeeChhhhcCCCCCcHHHHHHHHHHHHHHHhCCCCCCCCCCHHH--HHHHHHcC----
Confidence 62211 11122233446788999999654 68999999999999999998 999997643221 11111100
Q ss_pred hhhhcCCCCCCCCCCcHHHHHHHHHHHHHHhhhhhhhcchhhhHHHHHHHHHHhhccCCCCcCCCCCHHHHHHHHHHHHH
Q 005045 628 VMDILDPSMPLDEENDEEQIEEVIEEKEMMIHIDLEVNTKNKLEECFVSVLRIGLMCSTTSPRERIAMNVVVNNLKTIRN 707 (717)
Q Consensus 628 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~cl~~~p~~Rps~~eil~~l~~i~~ 707 (717)
.... .+..++..+.+++.+||+.+|++|||+++|++.|+.+..
T Consensus 589 ----~~~~---------------------------------~p~~~~~~l~~li~~cl~~dP~~RPs~~~l~~~L~~~~~ 631 (635)
T 4fl3_A 589 ----ERMG---------------------------------CPAGCPREMYDLMNLCWTYDVENRPGFAAVELRLRNYYY 631 (635)
T ss_dssp ----CCCC---------------------------------CCTTCCHHHHHHHHHHTCSSTTTSCCHHHHHHHHHHHHH
T ss_pred ----CCCC---------------------------------CCCCCCHHHHHHHHHHcCCCHhHCcCHHHHHHHHHHHHH
Confidence 0000 112346678999999999999999999999999999876
Q ss_pred HH
Q 005045 708 CF 709 (717)
Q Consensus 708 ~~ 709 (717)
+.
T Consensus 632 ~l 633 (635)
T 4fl3_A 632 DV 633 (635)
T ss_dssp HH
T ss_pred Hh
Confidence 54
No 253
>2y4i_B KSR2, HKSR2, kinase suppressor of RAS 2; transferase, KSR1; HET: ATP; 3.46A {Homo sapiens}
Probab=100.00 E-value=5.2e-38 Score=327.21 Aligned_cols=280 Identities=22% Similarity=0.351 Sum_probs=203.5
Q ss_pred CCCcccccCCCCcccccccccccccccccCcccccceEEEEeCCCchhhhHHhHhhh--hhHHHHHHHHHHHHhcCCCCc
Q 005045 369 TIPKEVRQSGMSYSDISKSTDNFSKENLIGTGSFGSVYKGTLGDGTIVAIKVLKLQQ--QGALKSFIDECNALKSTRHRN 446 (717)
Q Consensus 369 ~~p~~~~~~~~s~~~~~~~~~~y~~~~~ig~g~~g~v~~~~~~~~~~vavK~~~~~~--~~~~~~~~~e~~~l~~l~h~n 446 (717)
++|...........++....++|++.+.||+|+||.||+|.+.. .+|+|++.... ....+.+.+|+.++++++|||
T Consensus 13 ~~~~~~~~~~~~~~~~~i~~~~~~~~~~lg~G~~g~V~~~~~~~--~~avk~~~~~~~~~~~~~~~~~e~~~l~~l~h~~ 90 (319)
T 2y4i_B 13 SFPRKASQTSIFLQEWDIPFEQLEIGELIGKGRFGQVYHGRWHG--EVAIRLIDIERDNEDQLKAFKREVMAYRQTRHEN 90 (319)
T ss_dssp ---------CCCGGGSSSCCSCEECCCBCCCSSSSEEEEEEESS--SEEEEECCCCSCCCCCCCCCCTTGGGGTTCCCTT
T ss_pred ccCccccccccccccccCCHHHeEEeeEeccCCceEEEEEEEcC--eEEEEEeecCCCCHHHHHHHHHHHHHHhcCCCCC
Confidence 34444445556677888889999999999999999999999753 48899886432 223456778999999999999
Q ss_pred eeEEEEeeccccCCCCceEEEEEecCCCCChhhhccCCCCCcccccccCHHHHHHHHHHHHHHHHHHHhcCCCCeeecCC
Q 005045 447 ILRVITACSSVDLEGNDFKALVFEFMSNGNLDQWLHPSPAEHYQFKKLSVIQRLNIAIDVASALDYLHHHCDTPIAHCDL 526 (717)
Q Consensus 447 i~~~~~~~~~~~~~~~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~dl 526 (717)
|+++++++. ..+..++||||+++++|.+++.... ..+++..+..++.||+.||+|||+. +++||||
T Consensus 91 iv~~~~~~~-----~~~~~~iv~e~~~~~~L~~~l~~~~------~~~~~~~~~~i~~qi~~al~~lH~~---~i~H~dl 156 (319)
T 2y4i_B 91 VVLFMGACM-----SPPHLAIITSLCKGRTLYSVVRDAK------IVLDVNKTRQIAQEIVKGMGYLHAK---GILHKDL 156 (319)
T ss_dssp BCCCCEEEE-----CSSCEEEECBCCCSEEHHHHTTSSC------CCCCSHHHHHHHHHHHHHHHHHHHT---TCCCCCC
T ss_pred EeEEEEEEe-----cCCceEEEeecccCCcHHHHHHhcC------CCCCHHHHHHHHHHHHHHHHHHHhC---CccccCC
Confidence 999999964 3457999999999999999997643 4689999999999999999999998 9999999
Q ss_pred CCCCEEeCCCCceEEeeeccchhcccccCCCCCCcceeecccccccccCCCccCC----------CCCcccchhhHHHHH
Q 005045 527 KPSNVLLDKDMTAHVGDFGLAKFLFEISDNPSKNQTVSIGLKGSIGYIPPEHMNG----------QVSILGDIYSYGILL 596 (717)
Q Consensus 527 kp~NIll~~~~~~kl~Dfg~~~~~~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~----------~~~~~sDvwslG~vl 596 (717)
||+||+++ ++.+||+|||.+......... ..........|++.|+|||++.+ .++.++|||||||++
T Consensus 157 kp~NIl~~-~~~~~l~Dfg~~~~~~~~~~~--~~~~~~~~~~g~~~y~aPE~~~~~~~~~~~~~~~~~~~~Di~slG~il 233 (319)
T 2y4i_B 157 KSKNVFYD-NGKVVITDFGLFSISGVLQAG--RREDKLRIQNGWLCHLAPEIIRQLSPDTEEDKLPFSKHSDVFALGTIW 233 (319)
T ss_dssp CSTTEEEC---CCEECCCSCCC------------CCSCBCCSGGGGTSCHHHHSCBSCC--CCCSCCCHHHHHHHHHHHH
T ss_pred ChhhEEEe-CCCEEEeecCCcccccccccc--ccccccccCCCcccccChHHhhhccccccccccCCCchhhHHHHHHHH
Confidence 99999998 789999999998754221111 11112233458999999999653 368899999999999
Q ss_pred HHHHhCCCCCCCCCCCchhhhHHHHhcCChhhhhhcCCCCCCCCCCcHHHHHHHHHHHHHHhhhhhhhcchhhhHHHHHH
Q 005045 597 LEMFTGKRPTGDMFKDDFSIHMFVSMALPDHVMDILDPSMPLDEENDEEQIEEVIEEKEMMIHIDLEVNTKNKLEECFVS 676 (717)
Q Consensus 597 ~elltg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 676 (717)
|+|++|..||.....+. ........ ..+.... ..++..
T Consensus 234 ~el~~g~~p~~~~~~~~--~~~~~~~~--------~~~~~~~--------------------------------~~~~~~ 271 (319)
T 2y4i_B 234 YELHAREWPFKTQPAEA--IIWQMGTG--------MKPNLSQ--------------------------------IGMGKE 271 (319)
T ss_dssp HHHHHSSCSSSSCCHHH--HHHHHHTT--------CCCCCCC--------------------------------SSCCTT
T ss_pred HHHHhCCCCCCCCCHHH--HHHHhccC--------CCCCCCc--------------------------------CCCCHH
Confidence 99999999997543221 11111110 1111100 011345
Q ss_pred HHHHhhccCCCCcCCCCCHHHHHHHHHHHHHHH
Q 005045 677 VLRIGLMCSTTSPRERIAMNVVVNNLKTIRNCF 709 (717)
Q Consensus 677 l~~li~~cl~~~p~~Rps~~eil~~l~~i~~~~ 709 (717)
+.+++.+||+.+|++|||++|+++.|+.+.++.
T Consensus 272 l~~li~~~l~~~p~~Rpt~~~l~~~l~~l~~~~ 304 (319)
T 2y4i_B 272 ISDILLFCWAFEQEERPTFTKLMDMLEKLPKRN 304 (319)
T ss_dssp HHHHHHHHHCSSTTTSCCHHHHHHHHTTC----
T ss_pred HHHHHHHHhcCChhhCcCHHHHHHHHHHHHHhh
Confidence 788999999999999999999999999988654
No 254
>3kvw_A DYRK2, dual specificity tyrosine-phosphorylation-regulat 2; KI-(Y)-phosphorylation REG kinase 2, PSK-H2, kinase, structural genomics consortium; HET: SEP PTR IRB; 2.28A {Homo sapiens} PDB: 3k2l_A* 4azf_A*
Probab=100.00 E-value=4.6e-37 Score=332.26 Aligned_cols=200 Identities=26% Similarity=0.343 Sum_probs=167.0
Q ss_pred ccccccccccccCcccccceEEEEeC-CCchhhhHHhHhhhhhHHHHHHHHHHHHhcC------CCCceeEEEEeecccc
Q 005045 386 KSTDNFSKENLIGTGSFGSVYKGTLG-DGTIVAIKVLKLQQQGALKSFIDECNALKST------RHRNILRVITACSSVD 458 (717)
Q Consensus 386 ~~~~~y~~~~~ig~g~~g~v~~~~~~-~~~~vavK~~~~~~~~~~~~~~~e~~~l~~l------~h~ni~~~~~~~~~~~ 458 (717)
....+|++.+.||+|+||.||+|.+. +++.||+|++.... .....+.+|+++++.+ .|+||+++++.+..
T Consensus 94 ~~~~ry~~~~~LG~G~fg~V~~a~~~~~~~~vAvK~~~~~~-~~~~~~~~E~~~l~~l~~~~~~~~~~iv~~~~~~~~-- 170 (429)
T 3kvw_A 94 HVAYRYEVLKVIGKGSFGQVVKAYDHKVHQHVALKMVRNEK-RFHRQAAEEIRILEHLRKQDKDNTMNVIHMLENFTF-- 170 (429)
T ss_dssp EETTTEEEEEEEEESSSEEEEEEEETTTTEEEEEEEECSCH-HHHHHHHHHHHHHHHHHTTCTTSCSCBCCEEEEEEE--
T ss_pred cccCcEEEEEEcccCccEEEEEEEECCCCcEEEEEEECCcc-chHHHHHHHHHHHHHHhhccccCCcCEEEEEeeccc--
Confidence 34668999999999999999999965 78999999987543 2345667788877776 67799999999543
Q ss_pred CCCCceEEEEEecCCCCChhhhccCCCCCcccccccCHHHHHHHHHHHHHHHHHHHhcCCCCeeecCCCCCCEEeCCCCc
Q 005045 459 LEGNDFKALVFEFMSNGNLDQWLHPSPAEHYQFKKLSVIQRLNIAIDVASALDYLHHHCDTPIAHCDLKPSNVLLDKDMT 538 (717)
Q Consensus 459 ~~~~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~dlkp~NIll~~~~~ 538 (717)
....++||||+. ++|.+++..... ..+++..++.++.||+.||+|||+. +|+||||||+||+++.++.
T Consensus 171 ---~~~~~lv~e~~~-~~L~~~l~~~~~-----~~~~~~~~~~i~~qi~~aL~~LH~~---~ivHrDlKp~NILl~~~~~ 238 (429)
T 3kvw_A 171 ---RNHICMTFELLS-MNLYELIKKNKF-----QGFSLPLVRKFAHSILQCLDALHKN---RIIHCDLKPENILLKQQGR 238 (429)
T ss_dssp ---TTEEEEEECCCC-CBHHHHHHHTTT-----CCCCHHHHHHHHHHHHHHHHHHHHH---TEECSCCSGGGEEESSTTS
T ss_pred ---CCeEEEEEeccC-CCHHHHHHhccC-----CCCCHHHHHHHHHHHHHHHHHHHHC---CeecCCCCHHHeEEccCCC
Confidence 458999999995 699998875421 4589999999999999999999998 9999999999999999887
Q ss_pred --eEEeeeccchhcccccCCCCCCcceeecccccccccCCCccCC-CCCcccchhhHHHHHHHHHhCCCCCCCCC
Q 005045 539 --AHVGDFGLAKFLFEISDNPSKNQTVSIGLKGSIGYIPPEHMNG-QVSILGDIYSYGILLLEMFTGKRPTGDMF 610 (717)
Q Consensus 539 --~kl~Dfg~~~~~~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~-~~~~~sDvwslG~vl~elltg~~p~~~~~ 610 (717)
+||+|||.++... .......||+.|+|||++.+ .++.++|||||||++|||++|..||....
T Consensus 239 ~~vkL~DFG~a~~~~----------~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwSlG~il~elltG~~pf~~~~ 303 (429)
T 3kvw_A 239 SGIKVIDFGSSCYEH----------QRVYTYIQSRFYRAPEVILGARYGMPIDMWSLGCILAELLTGYPLLPGED 303 (429)
T ss_dssp CCEEECCCTTCEETT----------CCCCSSCSCGGGCCHHHHHTBCCCTHHHHHHHHHHHHHHHHSSCSSCCSS
T ss_pred cceEEeecccceecC----------CcccccCCCCCccChHHHhCCCCCchHHHHhHHHHHHHHHhCCCCCCCCC
Confidence 9999999997541 11223568999999999655 58999999999999999999999997653
No 255
>1phk_A Phosphorylase kinase; glycogen metabolism, transferase, serine/threonine-protein, ATP-binding, calmodulin-binding; HET: ATP; 2.20A {Oryctolagus cuniculus} SCOP: d.144.1.7 PDB: 1ql6_A* 2phk_A*
Probab=100.00 E-value=3.5e-37 Score=317.62 Aligned_cols=252 Identities=22% Similarity=0.318 Sum_probs=198.6
Q ss_pred ccccccccccccCcccccceEEEEeC-CCchhhhHHhHhhh---------hhHHHHHHHHHHHHhcCC-CCceeEEEEee
Q 005045 386 KSTDNFSKENLIGTGSFGSVYKGTLG-DGTIVAIKVLKLQQ---------QGALKSFIDECNALKSTR-HRNILRVITAC 454 (717)
Q Consensus 386 ~~~~~y~~~~~ig~g~~g~v~~~~~~-~~~~vavK~~~~~~---------~~~~~~~~~e~~~l~~l~-h~ni~~~~~~~ 454 (717)
...++|++.+.||+|++|.||+|.++ +++.||+|++.... ....+.+.+|+++++++. ||||+++++++
T Consensus 14 ~~~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~~~~~~~e~~~l~~l~~h~~i~~~~~~~ 93 (298)
T 1phk_A 14 GFYENYEPKEILGRGVSSVVRRCIHKPTCKEYAVKIIDVTGGGSFSAEEVQELREATLKEVDILRKVSGHPNIIQLKDTY 93 (298)
T ss_dssp -CTTTEEEEEEEEECSSEEEEEEEETTTTEEEEEEEEETTCSTTCCHHHHHHHHHHHHHHHHHHHHHTTCTTBCCEEEEE
T ss_pred chhhccceeeeecCCCceEEEEEEEcCcCceEEEEEEecccccccCHHHHHHHHHHHHHHHHHHHHhcCCCCEeeeeeee
Confidence 34679999999999999999999975 78999999986432 233567889999999995 99999999995
Q ss_pred ccccCCCCceEEEEEecCCCCChhhhccCCCCCcccccccCHHHHHHHHHHHHHHHHHHHhcCCCCeeecCCCCCCEEeC
Q 005045 455 SSVDLEGNDFKALVFEFMSNGNLDQWLHPSPAEHYQFKKLSVIQRLNIAIDVASALDYLHHHCDTPIAHCDLKPSNVLLD 534 (717)
Q Consensus 455 ~~~~~~~~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~dlkp~NIll~ 534 (717)
......++||||+++++|.+++... ..+++..+..++.||+.||+|||+. +++||||+|+||+++
T Consensus 94 -----~~~~~~~lv~e~~~~~~L~~~l~~~-------~~~~~~~~~~~~~qi~~~l~~lH~~---~i~H~dl~p~Nil~~ 158 (298)
T 1phk_A 94 -----ETNTFFFLVFDLMKKGELFDYLTEK-------VTLSEKETRKIMRALLEVICALHKL---NIVHRDLKPENILLD 158 (298)
T ss_dssp -----ECSSEEEEEEECCTTCBHHHHHHHH-------SSCCHHHHHHHHHHHHHHHHHHHHT---TEECSCCSGGGEEEC
T ss_pred -----ccCCeEEEEEeccCCCcHHHHHhcc-------CCCCHHHHHHHHHHHHHHHHHHHHC---CcccCCCCcceEEEc
Confidence 3456899999999999999999743 5689999999999999999999998 999999999999999
Q ss_pred CCCceEEeeeccchhcccccCCCCCCcceeecccccccccCCCccC-------CCCCcccchhhHHHHHHHHHhCCCCCC
Q 005045 535 KDMTAHVGDFGLAKFLFEISDNPSKNQTVSIGLKGSIGYIPPEHMN-------GQVSILGDIYSYGILLLEMFTGKRPTG 607 (717)
Q Consensus 535 ~~~~~kl~Dfg~~~~~~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~-------~~~~~~sDvwslG~vl~elltg~~p~~ 607 (717)
.++.+||+|||.+..... ........+++.|+|||++. +.++.++|||||||++|+|++|..||.
T Consensus 159 ~~~~~kl~dfg~~~~~~~--------~~~~~~~~~~~~y~aPE~~~~~~~~~~~~~~~~~Di~slG~~l~~l~~g~~p~~ 230 (298)
T 1phk_A 159 DDMNIKLTDFGFSCQLDP--------GEKLREVCGTPSYLAPEIIECSMNDNHPGYGKEVDMWSTGVIMYTLLAGSPPFW 230 (298)
T ss_dssp TTCCEEECCCTTCEECCT--------TCCBCCCCSCGGGCCHHHHHHHHCTTSCCBCTHHHHHHHHHHHHHHHHSSCSSC
T ss_pred CCCcEEEecccchhhcCC--------CcccccccCCccccCHHHhccccccccccCCcccccHhHHHHHHHHHHCCCCCc
Confidence 999999999999876521 11123356899999999863 347899999999999999999999996
Q ss_pred CCCCCchhhhHHHHhcCChhhhhhcCCCCCCCCCCcHHHHHHHHHHHHHHhhhhhhhcchhhhHHHHHHHHHHhhccCCC
Q 005045 608 DMFKDDFSIHMFVSMALPDHVMDILDPSMPLDEENDEEQIEEVIEEKEMMIHIDLEVNTKNKLEECFVSVLRIGLMCSTT 687 (717)
Q Consensus 608 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~cl~~ 687 (717)
..... ........ ....... +....++..+.+++.+||+.
T Consensus 231 ~~~~~--~~~~~~~~-----------~~~~~~~---------------------------~~~~~~~~~l~~li~~~l~~ 270 (298)
T 1phk_A 231 HRKQM--LMLRMIMS-----------GNYQFGS---------------------------PEWDDYSDTVKDLVSRFLVV 270 (298)
T ss_dssp CSSHH--HHHHHHHH-----------TCCCCCT---------------------------TTGGGSCHHHHHHHHHHCCS
T ss_pred CccHH--HHHHHHhc-----------CCcccCc---------------------------ccccccCHHHHHHHHHHccC
Confidence 53211 11111000 0000000 01122356788999999999
Q ss_pred CcCCCCCHHHHHH
Q 005045 688 SPRERIAMNVVVN 700 (717)
Q Consensus 688 ~p~~Rps~~eil~ 700 (717)
+|++|||+.|+++
T Consensus 271 dp~~Rps~~~ll~ 283 (298)
T 1phk_A 271 QPQKRYTAEEALA 283 (298)
T ss_dssp SGGGSCCHHHHTT
T ss_pred CcccCCCHHHHHh
Confidence 9999999999985
No 256
>1vzo_A Ribosomal protein S6 kinase alpha 5; protein kinase, transferase, phosphorylation, serine/threonine protein kinase; 1.8A {Homo sapiens} SCOP: d.144.1.7
Probab=100.00 E-value=1.5e-37 Score=328.10 Aligned_cols=256 Identities=22% Similarity=0.308 Sum_probs=198.4
Q ss_pred ccccccccccccCcccccceEEEEe----CCCchhhhHHhHhhh----hhHHHHHHHHHHHHhcC-CCCceeEEEEeecc
Q 005045 386 KSTDNFSKENLIGTGSFGSVYKGTL----GDGTIVAIKVLKLQQ----QGALKSFIDECNALKST-RHRNILRVITACSS 456 (717)
Q Consensus 386 ~~~~~y~~~~~ig~g~~g~v~~~~~----~~~~~vavK~~~~~~----~~~~~~~~~e~~~l~~l-~h~ni~~~~~~~~~ 456 (717)
...++|++.++||+|+||.||+|+. .+++.||+|++.... ......+.+|+++++++ .||||+++++++.
T Consensus 51 ~~~~~y~~~~~lG~G~~g~Vy~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~~E~~~l~~l~~h~~iv~~~~~~~- 129 (355)
T 1vzo_A 51 VGIENFELLKVLGTGAYGKVFLVRKISGHDTGKLYAMKVLKKATIVQKAKTTEHTRTERQVLEHIRQSPFLVTLHYAFQ- 129 (355)
T ss_dssp CCGGGEEEEEEEEETTTEEEEEEEECSSTTTTCEEEEEEESEEEEEEEESSGGGCCCHHHHHHHHHTCTTBCCEEEEEE-
T ss_pred ccccceEEEEEeccCCCEEEEEEEEcccCCCCeEEEEEEEeHHHhhhhhhHHHHHHHHHHHHHHccCCCceeEEEEEEe-
Confidence 3457999999999999999999996 378899999986432 22345677899999999 7999999999853
Q ss_pred ccCCCCceEEEEEecCCCCChhhhccCCCCCcccccccCHHHHHHHHHHHHHHHHHHHhcCCCCeeecCCCCCCEEeCCC
Q 005045 457 VDLEGNDFKALVFEFMSNGNLDQWLHPSPAEHYQFKKLSVIQRLNIAIDVASALDYLHHHCDTPIAHCDLKPSNVLLDKD 536 (717)
Q Consensus 457 ~~~~~~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~dlkp~NIll~~~ 536 (717)
..+..++||||+++++|.+++... ..+++..+..++.||+.||+|||+. +|+||||||+||+++.+
T Consensus 130 ----~~~~~~lv~e~~~~~~L~~~l~~~-------~~~~~~~~~~~~~qi~~aL~~LH~~---~ivH~Dlkp~NIll~~~ 195 (355)
T 1vzo_A 130 ----TETKLHLILDYINGGELFTHLSQR-------ERFTEHEVQIYVGEIVLALEHLHKL---GIIYRDIKLENILLDSN 195 (355)
T ss_dssp ----ETTEEEEEECCCCSCBHHHHHHHH-------SCCCHHHHHHHHHHHHHHHHHHHHT---TCCCCCCCGGGEEECTT
T ss_pred ----eCceEEEEeecCCCCCHHHHHHHc-------CCCCHHHHHHHHHHHHHHHHHHHHC---CcccCCCCHHHEEECCC
Confidence 345899999999999999998743 5689999999999999999999997 99999999999999999
Q ss_pred CceEEeeeccchhcccccCCCCCCcceeecccccccccCCCccCC---CCCcccchhhHHHHHHHHHhCCCCCCCCCCCc
Q 005045 537 MTAHVGDFGLAKFLFEISDNPSKNQTVSIGLKGSIGYIPPEHMNG---QVSILGDIYSYGILLLEMFTGKRPTGDMFKDD 613 (717)
Q Consensus 537 ~~~kl~Dfg~~~~~~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~---~~~~~sDvwslG~vl~elltg~~p~~~~~~~~ 613 (717)
+.+||+|||+++..... .........||+.|+|||++.+ .++.++|||||||++|+|++|..||.......
T Consensus 196 ~~~kl~DfG~a~~~~~~------~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~~DvwslG~il~ell~g~~pf~~~~~~~ 269 (355)
T 1vzo_A 196 GHVVLTDFGLSKEFVAD------ETERAYDFCGTIEYMAPDIVRGGDSGHDKAVDWWSLGVLMYELLTGASPFTVDGEKN 269 (355)
T ss_dssp SCEEESCSSEEEECCGG------GGGGGCGGGSCCTTCCHHHHTTCC---CTHHHHHHHHHHHHHHHHSSCTTSCTTSCC
T ss_pred CcEEEeeCCCCeecccC------CCCcccCcccCcCccChhhhcCCCCCCCchhhHHHHHHHHHHHHHCCCCCccCCccc
Confidence 99999999999764211 1112234568999999999764 36899999999999999999999997543221
Q ss_pred hhhhHHHHhcCChhhhhhcCCCCCCCCCCcHHHHHHHHHHHHHHhhhhhhhcchhhhHHHHHHHHHHhhccCCCCcCCCC
Q 005045 614 FSIHMFVSMALPDHVMDILDPSMPLDEENDEEQIEEVIEEKEMMIHIDLEVNTKNKLEECFVSVLRIGLMCSTTSPRERI 693 (717)
Q Consensus 614 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~cl~~~p~~Rp 693 (717)
... .... .+...... .+.+++..+.+++.+||+.+|++||
T Consensus 270 ~~~-~~~~--------~~~~~~~~-------------------------------~~~~~~~~~~~li~~~L~~dP~~R~ 309 (355)
T 1vzo_A 270 SQA-EISR--------RILKSEPP-------------------------------YPQEMSALAKDLIQRLLMKDPKKRL 309 (355)
T ss_dssp CHH-HHHH--------HHHHCCCC-------------------------------CCTTSCHHHHHHHHHHTCSSGGGST
T ss_pred hHH-HHHH--------HHhccCCC-------------------------------CCcccCHHHHHHHHHHhhhCHHHhc
Confidence 110 0000 00000000 0112245678899999999999999
Q ss_pred -----CHHHHHHHH
Q 005045 694 -----AMNVVVNNL 702 (717)
Q Consensus 694 -----s~~eil~~l 702 (717)
|++|+++..
T Consensus 310 ~~~~~s~~ell~h~ 323 (355)
T 1vzo_A 310 GCGPRDADEIKEHL 323 (355)
T ss_dssp TSSTTTHHHHHTSG
T ss_pred CCCCCCHHHHHcCc
Confidence 999998753
No 257
>2wei_A Calmodulin-domain protein kinase 1, putative; nucleotide-binding, serine/threonine-protein kinase, CGD3_920, transferase; HET: VGG; 1.65A {Cryptosporidium parvum iowa II} PDB: 3dfa_A 3ma6_A*
Probab=100.00 E-value=3.3e-37 Score=315.92 Aligned_cols=251 Identities=25% Similarity=0.326 Sum_probs=199.3
Q ss_pred ccccccccccCcccccceEEEEeC-CCchhhhHHhHhhh--hhHHHHHHHHHHHHhcCCCCceeEEEEeeccccCCCCce
Q 005045 388 TDNFSKENLIGTGSFGSVYKGTLG-DGTIVAIKVLKLQQ--QGALKSFIDECNALKSTRHRNILRVITACSSVDLEGNDF 464 (717)
Q Consensus 388 ~~~y~~~~~ig~g~~g~v~~~~~~-~~~~vavK~~~~~~--~~~~~~~~~e~~~l~~l~h~ni~~~~~~~~~~~~~~~~~ 464 (717)
.++|++.+.||+|++|.||+|.++ +++.||+|++.... ......+.+|++++++++||||+++++++. ..+.
T Consensus 21 ~~~y~i~~~lg~G~~g~V~~~~~~~~~~~valK~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~-----~~~~ 95 (287)
T 2wei_A 21 AERYNIVCMLGKGSFGEVLKCKDRITQQEYAVKVINKASAKNKDTSTILREVELLKKLDHPNIMKLFEILE-----DSSS 95 (287)
T ss_dssp HHHEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEEGGGBSSSCHHHHHHHHHHHHTCCCTTBCCEEEEEE-----CSSE
T ss_pred hhcceeeEEEcCCCCEEEEEEEEcCCCcEEEEEEecccccchHHHHHHHHHHHHHHhccCCCccEEEEEEe-----CCCe
Confidence 568999999999999999999975 78999999986543 234577889999999999999999999953 4558
Q ss_pred EEEEEecCCCCChhhhccCCCCCcccccccCHHHHHHHHHHHHHHHHHHHhcCCCCeeecCCCCCCEEeCCC---CceEE
Q 005045 465 KALVFEFMSNGNLDQWLHPSPAEHYQFKKLSVIQRLNIAIDVASALDYLHHHCDTPIAHCDLKPSNVLLDKD---MTAHV 541 (717)
Q Consensus 465 ~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~dlkp~NIll~~~---~~~kl 541 (717)
.++||||+++++|.+++... ..+++..+..++.||+.||+|||+. +++||||||+||+++.+ +.+||
T Consensus 96 ~~lv~e~~~~~~L~~~l~~~-------~~~~~~~~~~i~~qi~~~l~~LH~~---~i~H~dl~p~NIlv~~~~~~~~~kL 165 (287)
T 2wei_A 96 FYIVGELYTGGELFDEIIKR-------KRFSEHDAARIIKQVFSGITYMHKH---NIVHRDLKPENILLESKEKDCDIKI 165 (287)
T ss_dssp EEEEECCCCSCBHHHHHHHH-------SSCCHHHHHHHHHHHHHHHHHHHHT---TCCCSCCCGGGEEESCSSTTCCEEE
T ss_pred EEEEEEccCCCCHHHHHHhc-------CCCCHHHHHHHHHHHHHHHHHHHHC---CeeccCCChhhEEEecCCCcccEEE
Confidence 99999999999999988643 5689999999999999999999998 99999999999999754 47999
Q ss_pred eeeccchhcccccCCCCCCcceeecccccccccCCCccCCCCCcccchhhHHHHHHHHHhCCCCCCCCCCCchhhhHHHH
Q 005045 542 GDFGLAKFLFEISDNPSKNQTVSIGLKGSIGYIPPEHMNGQVSILGDIYSYGILLLEMFTGKRPTGDMFKDDFSIHMFVS 621 (717)
Q Consensus 542 ~Dfg~~~~~~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~sDvwslG~vl~elltg~~p~~~~~~~~~~~~~~~~ 621 (717)
+|||.+...... .......+++.|+|||++.+.++.++|||||||++|+|++|..||....... ......
T Consensus 166 ~Dfg~~~~~~~~--------~~~~~~~~~~~y~aPE~~~~~~~~~~Di~slG~~l~~l~~g~~p~~~~~~~~--~~~~~~ 235 (287)
T 2wei_A 166 IDFGLSTCFQQN--------TKMKDRIGTAYYIAPEVLRGTYDEKCDVWSAGVILYILLSGTPPFYGKNEYD--ILKRVE 235 (287)
T ss_dssp CSTTGGGTBCCC--------SSCSCHHHHHTTCCHHHHTTCCCTHHHHHHHHHHHHHHHHSSCSSCCSSHHH--HHHHHH
T ss_pred eccCcceeecCC--------CccccccCcccccChHHhcCCCCCchhhHhHHHHHHHHHhCCCCCCCCCHHH--HHHHHH
Confidence 999998865211 1112345889999999998889999999999999999999999997642211 111110
Q ss_pred hcCChhhhhhcCCCCCCCCCCcHHHHHHHHHHHHHHhhhhhhhcchhhhHHHHHHHHHHhhccCCCCcCCCCCHHHHHHH
Q 005045 622 MALPDHVMDILDPSMPLDEENDEEQIEEVIEEKEMMIHIDLEVNTKNKLEECFVSVLRIGLMCSTTSPRERIAMNVVVNN 701 (717)
Q Consensus 622 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~cl~~~p~~Rps~~eil~~ 701 (717)
. ....... +....++..+.+++.+||+.+|++|||+.|+++.
T Consensus 236 ~-----------~~~~~~~---------------------------~~~~~~~~~~~~li~~~l~~dp~~Rps~~ell~h 277 (287)
T 2wei_A 236 T-----------GKYAFDL---------------------------PQWRTISDDAKDLIRKMLTFHPSLRITATQCLEH 277 (287)
T ss_dssp H-----------CCCCCCS---------------------------GGGTTSCHHHHHHHHHHTCSSGGGSCCHHHHHHS
T ss_pred c-----------CCCCCCc---------------------------hhhhhcCHHHHHHHHHHcccChhhCcCHHHHhcC
Confidence 0 0000000 0111225568899999999999999999999973
No 258
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=100.00 E-value=8.9e-35 Score=316.06 Aligned_cols=311 Identities=25% Similarity=0.342 Sum_probs=178.8
Q ss_pred eecEEEcCCCcCcCCCCcCCcCCCCCCEEECCCCcccccCCcCCCCCCCCCEEEccCccccccCCccccCCCCCCEEecc
Q 005045 11 MTQDLNLTYNYLSGKIPTNLSHCTELRSFEASVNDFVGQIPNQLSSLTKLEIIGLGGSNLTGNVPAWIGNFSSLKALSLA 90 (717)
Q Consensus 11 ~~~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~ 90 (717)
.+++|+|++|++++ +|.. +++|++|++++|.+++ +|.. .++|++|++++|.+++ +| .|+++++|++|+++
T Consensus 92 ~L~~L~l~~n~l~~-lp~~---~~~L~~L~l~~n~l~~-l~~~---~~~L~~L~L~~n~l~~-lp-~~~~l~~L~~L~l~ 161 (454)
T 1jl5_A 92 HLESLVASCNSLTE-LPEL---PQSLKSLLVDNNNLKA-LSDL---PPLLEYLGVSNNQLEK-LP-ELQNSSFLKIIDVD 161 (454)
T ss_dssp TCSEEECCSSCCSS-CCCC---CTTCCEEECCSSCCSC-CCSC---CTTCCEEECCSSCCSS-CC-CCTTCTTCCEEECC
T ss_pred CCCEEEccCCcCCc-cccc---cCCCcEEECCCCccCc-ccCC---CCCCCEEECcCCCCCC-Cc-ccCCCCCCCEEECC
Confidence 45566666666654 4432 2556666666666552 3221 1466666666666663 55 36666666666666
Q ss_pred CCcCcccCChhhhccCCCCeEeccCCCCCCCCCccccCCCCccEEEcccCcccccCCcccccCCCCcceeeccccccccc
Q 005045 91 WNNLRGSIPNELGQLSGLGFFTLYGNFISGIIPSSIYNISSIYYFSVTQNQLHGQLPTDVGLTLPNLKIFAGAVNYFTGS 170 (717)
Q Consensus 91 ~n~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~~l~~~~~~~l~~L~~L~l~~n~l~~~ 170 (717)
+|++++ +|..+ .+|++|+|++|++++ +| .|.++++|++|++++|.++ .+|.. .++|+.|++++|.+. .
T Consensus 162 ~N~l~~-lp~~~---~~L~~L~L~~n~l~~-l~-~~~~l~~L~~L~l~~N~l~-~l~~~----~~~L~~L~l~~n~l~-~ 229 (454)
T 1jl5_A 162 NNSLKK-LPDLP---PSLEFIAAGNNQLEE-LP-ELQNLPFLTAIYADNNSLK-KLPDL----PLSLESIVAGNNILE-E 229 (454)
T ss_dssp SSCCSC-CCCCC---TTCCEEECCSSCCSS-CC-CCTTCTTCCEEECCSSCCS-SCCCC----CTTCCEEECCSSCCS-S
T ss_pred CCcCcc-cCCCc---ccccEEECcCCcCCc-Cc-cccCCCCCCEEECCCCcCC-cCCCC----cCcccEEECcCCcCC-c
Confidence 666663 44332 366666666666664 33 4666667777777777666 34432 246667777777666 3
Q ss_pred CCccCCCCCCCCEEeccCccccccCCCCccCCCCCCeeeccccccCCcccCchhhhhhhccCCCCCEEEeecCcccCcCc
Q 005045 171 IPVSLSNASNLQVLDFAENGLTGTIPGNFGSLKDLVRLNFDQNELGSREIGDLNFLKFLANCTSLEVLGLARNSFGGEMP 250 (717)
Q Consensus 171 ~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~~~p 250 (717)
+| .+..+++|++|++++|++++ +|.. +++|+.|++++|+++.++. .+++|+.|++++|.+++ +|
T Consensus 230 lp-~~~~l~~L~~L~l~~N~l~~-l~~~---~~~L~~L~l~~N~l~~l~~----------~~~~L~~L~ls~N~l~~-l~ 293 (454)
T 1jl5_A 230 LP-ELQNLPFLTTIYADNNLLKT-LPDL---PPSLEALNVRDNYLTDLPE----------LPQSLTFLDVSENIFSG-LS 293 (454)
T ss_dssp CC-CCTTCTTCCEEECCSSCCSS-CCSC---CTTCCEEECCSSCCSCCCC----------CCTTCCEEECCSSCCSE-ES
T ss_pred cc-ccCCCCCCCEEECCCCcCCc-cccc---ccccCEEECCCCcccccCc----------ccCcCCEEECcCCccCc-cc
Confidence 44 36666777777777777663 3432 3566777777776666431 13567777777777763 22
Q ss_pred hhhhhccccccEEecCCCccCCCCCccccCC-CCCCEEEccCCcCccccchhhhcCCCCCeEEcccCcCCCCCCcccccc
Q 005045 251 ISIANLSTHLRRLTMGENLMHGNIPVGIGNL-VNLNLLGLEGNNLSGSVPEVIGRLNKLEGLGLNVNKFSGLIPSSLGNL 329 (717)
Q Consensus 251 ~~~~~~~~~L~~L~l~~N~l~~~~~~~~~~l-~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l 329 (717)
. .+++|+.|++++|.+++ +..+ ++|+.|++++|++++ +|.. +++|++|++++|+++++ |. .+
T Consensus 294 ~----~~~~L~~L~l~~N~l~~-----i~~~~~~L~~L~Ls~N~l~~-lp~~---~~~L~~L~L~~N~l~~l-p~---~l 356 (454)
T 1jl5_A 294 E----LPPNLYYLNASSNEIRS-----LCDLPPSLEELNVSNNKLIE-LPAL---PPRLERLIASFNHLAEV-PE---LP 356 (454)
T ss_dssp C----CCTTCCEEECCSSCCSE-----ECCCCTTCCEEECCSSCCSC-CCCC---CTTCCEEECCSSCCSCC-CC---CC
T ss_pred C----cCCcCCEEECcCCcCCc-----ccCCcCcCCEEECCCCcccc-cccc---CCcCCEEECCCCccccc-cc---hh
Confidence 1 12467777777777764 1223 478888888888874 5543 57788888888888754 43 36
Q ss_pred cccceeecccccccc--cCCcCccCc-------------CCCceEEeecccCCC--CCCccccc
Q 005045 330 TILTRLWMEENRLEG--SIPPSLGNC-------------QKLLVLNLSSNDLNG--TIPKEVRQ 376 (717)
Q Consensus 330 ~~L~~L~L~~N~l~~--~~p~~~~~l-------------~~L~~L~l~~N~l~~--~~p~~~~~ 376 (717)
++|++|+|++|++++ .+|..+..+ ++|+.|++++|++++ .+|+++..
T Consensus 357 ~~L~~L~L~~N~l~~l~~ip~~l~~L~~n~~~~~i~~~~~~L~~L~ls~N~l~~~~~iP~sl~~ 420 (454)
T 1jl5_A 357 QNLKQLHVEYNPLREFPDIPESVEDLRMNSHLAEVPELPQNLKQLHVETNPLREFPDIPESVED 420 (454)
T ss_dssp TTCCEEECCSSCCSSCCCCCTTCCEEECCC----------------------------------
T ss_pred hhccEEECCCCCCCcCCCChHHHHhhhhcccccccccccCcCCEEECCCCcCCccccchhhHhh
Confidence 778888888888887 677777777 778888888888876 67766543
No 259
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=100.00 E-value=1.2e-35 Score=310.93 Aligned_cols=288 Identities=20% Similarity=0.231 Sum_probs=197.9
Q ss_pred CCCEEEccCccccccCCccccCCCCCCEEeccCCcCcccCChhhhccCCCCeEeccCCCCCCCCCccccCCCCccEEEcc
Q 005045 59 KLEIIGLGGSNLTGNVPAWIGNFSSLKALSLAWNNLRGSIPNELGQLSGLGFFTLYGNFISGIIPSSIYNISSIYYFSVT 138 (717)
Q Consensus 59 ~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~ 138 (717)
+++.++++++.++ .+|..+. ++|++|+|++|.|++..+..|.++++|++|+|++|.++++.|..|.++++|++|+|+
T Consensus 34 ~l~~l~~~~~~l~-~ip~~~~--~~l~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~ 110 (332)
T 2ft3_A 34 HLRVVQCSDLGLK-AVPKEIS--PDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYIS 110 (332)
T ss_dssp ETTEEECCSSCCS-SCCSCCC--TTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGSTTCTTCCEEECC
T ss_pred cCCEEECCCCCcc-ccCCCCC--CCCeEEECCCCcCCccCHhHhhCCCCCcEEECCCCccCccCHhHhhCcCCCCEEECC
Confidence 4666666666666 4554443 456666666666665555566666666666666666665556666666666666666
Q ss_pred cCcccccCCcccccCCCCcceeecccccccccCCccCCCCCCCCEEeccCccccc--cCCCCccCCCCCCeeeccccccC
Q 005045 139 QNQLHGQLPTDVGLTLPNLKIFAGAVNYFTGSIPVSLSNASNLQVLDFAENGLTG--TIPGNFGSLKDLVRLNFDQNELG 216 (717)
Q Consensus 139 ~N~l~~~l~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~--~~~~~~~~l~~L~~L~l~~N~l~ 216 (717)
+|.++ .+|..++ ++|++|++++|.+....+..|.++++|++|++++|.++. ..+..|..+ +|+.|++++|.++
T Consensus 111 ~n~l~-~l~~~~~---~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l-~L~~L~l~~n~l~ 185 (332)
T 2ft3_A 111 KNHLV-EIPPNLP---SSLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGL-KLNYLRISEAKLT 185 (332)
T ss_dssp SSCCC-SCCSSCC---TTCCEEECCSSCCCCCCSGGGSSCSSCCEEECCSCCCBGGGSCTTSSCSC-CCSCCBCCSSBCS
T ss_pred CCcCC-ccCcccc---ccCCEEECCCCccCccCHhHhCCCccCCEEECCCCccccCCCCcccccCC-ccCEEECcCCCCC
Confidence 66665 5555544 566666666666665555556677777777777777642 555666666 7777777777776
Q ss_pred CcccCchhhhhhhccCCCCCEEEeecCcccCcCchhhhhccccccEEecCCCccCCCCCccccCCCCCCEEEccCCcCcc
Q 005045 217 SREIGDLNFLKFLANCTSLEVLGLARNSFGGEMPISIANLSTHLRRLTMGENLMHGNIPVGIGNLVNLNLLGLEGNNLSG 296 (717)
Q Consensus 217 ~~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~~~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~ 296 (717)
.++.. + .++|++|++++|.+++..+..+..+ ++|++|++++|.+++..+..|..+++|+.|+|++|+++
T Consensus 186 ~l~~~-------~--~~~L~~L~l~~n~i~~~~~~~l~~l-~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~- 254 (332)
T 2ft3_A 186 GIPKD-------L--PETLNELHLDHNKIQAIELEDLLRY-SKLYRLGLGHNQIRMIENGSLSFLPTLRELHLDNNKLS- 254 (332)
T ss_dssp SCCSS-------S--CSSCSCCBCCSSCCCCCCTTSSTTC-TTCSCCBCCSSCCCCCCTTGGGGCTTCCEEECCSSCCC-
T ss_pred ccCcc-------c--cCCCCEEECCCCcCCccCHHHhcCC-CCCCEEECCCCcCCcCChhHhhCCCCCCEEECCCCcCe-
Confidence 65421 1 1567777777777775555666666 47888888888887777777888888888888888888
Q ss_pred ccchhhhcCCCCCeEEcccCcCCCCCCcccccc------cccceeeccccccc--ccCCcCccCcCCCceEEeeccc
Q 005045 297 SVPEVIGRLNKLEGLGLNVNKFSGLIPSSLGNL------TILTRLWMEENRLE--GSIPPSLGNCQKLLVLNLSSND 365 (717)
Q Consensus 297 ~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l------~~L~~L~L~~N~l~--~~~p~~~~~l~~L~~L~l~~N~ 365 (717)
.+|..+..+++|+.|++++|+++++.+..|..+ +.|+.|++++|++. +..|..|..+++|+.+++++|.
T Consensus 255 ~lp~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~l~~L~l~~N~~~~~~~~~~~~~~l~~L~~l~l~~n~ 331 (332)
T 2ft3_A 255 RVPAGLPDLKLLQVVYLHTNNITKVGVNDFCPVGFGVKRAYYNGISLFNNPVPYWEVQPATFRCVTDRLAIQFGNYK 331 (332)
T ss_dssp BCCTTGGGCTTCCEEECCSSCCCBCCTTSSSCSSCCSSSCCBSEEECCSSSSCGGGSCGGGGTTBCCSTTEEC----
T ss_pred ecChhhhcCccCCEEECCCCCCCccChhHccccccccccccccceEeecCcccccccCcccccccchhhhhhccccc
Confidence 677778888888888888888888777777653 56888899998886 5677788888899999888874
No 260
>3q60_A ROP5B; pseudokinase, transferase; HET: ATP; 1.72A {Toxoplasma gondii} PDB: 3q5z_A*
Probab=100.00 E-value=1.4e-37 Score=330.78 Aligned_cols=268 Identities=12% Similarity=0.031 Sum_probs=183.2
Q ss_pred cccccccccccccCcccccceEEEEeC-CCchhhhHHhHhhh---hhHHHHHHHHH---HHHhcCCCCceeEEEEee---
Q 005045 385 SKSTDNFSKENLIGTGSFGSVYKGTLG-DGTIVAIKVLKLQQ---QGALKSFIDEC---NALKSTRHRNILRVITAC--- 454 (717)
Q Consensus 385 ~~~~~~y~~~~~ig~g~~g~v~~~~~~-~~~~vavK~~~~~~---~~~~~~~~~e~---~~l~~l~h~ni~~~~~~~--- 454 (717)
.....+|++.+.||+|+||.||+|.+. +++.||+|++.... ....+.+.+|+ ++++. +||||++++..+
T Consensus 58 ~~~~~~y~~~~~lG~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~E~~~~~~l~~-~hp~iv~~~~~~~~p 136 (371)
T 3q60_A 58 SQGERKLKLVEPLRVGDRSVVFLVRDVERLEDFALKVFTMGAENSRSELERLHEATFAAARLLG-ESPEEARDRRRLLLP 136 (371)
T ss_dssp TCCEEEEEEEEEEEECSSEEEEEEEETTTTEEEEEEEEECCSTTHHHHHHHHHHHHHHHHHHHC-----------CBCCC
T ss_pred CCCceeeeeeeeccCCCCEEEEEEEECCCCceeEEEEEEecccccccHHHHHHHHHHHHHHhcc-cChhhhhhceeEEee
Confidence 334567999999999999999999965 89999999987642 23456677784 45555 799988865332
Q ss_pred ----ccccC------------CCCceEEEEEecCCCCChhhhccCCCCCcccccccCHHHH------HHHHHHHHHHHHH
Q 005045 455 ----SSVDL------------EGNDFKALVFEFMSNGNLDQWLHPSPAEHYQFKKLSVIQR------LNIAIDVASALDY 512 (717)
Q Consensus 455 ----~~~~~------------~~~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~------~~i~~~i~~~l~~ 512 (717)
..... ......|+||||++ ++|.+++.... ..+++..+ ..++.||+.||+|
T Consensus 137 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~lv~e~~~-~~L~~~l~~~~------~~~~~~~~~~~~vk~~i~~qi~~aL~~ 209 (371)
T 3q60_A 137 SDAVAVQSQPPFAQLSPGQDDYAVANYLLLMPAAS-VDLELLFSTLD------FVYVFRGDEGILALHILTAQLIRLAAN 209 (371)
T ss_dssp CEEEEETTSCSSSBCSCC---CCEEEEEEEECCCS-EEHHHHHHHHH------HSCCCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred ehheecCCCCCeeeccCCcccceeeeEEEEecCCC-CCHHHHHHHhc------cccchhhhhhhhhHHHHHHHHHHHHHH
Confidence 11100 00145899999997 89999997531 22344444 6778999999999
Q ss_pred HHhcCCCCeeecCCCCCCEEeCCCCceEEeeeccchhcccccCCCCCCcceeecccccccccCCCccCC---CCCcccch
Q 005045 513 LHHHCDTPIAHCDLKPSNVLLDKDMTAHVGDFGLAKFLFEISDNPSKNQTVSIGLKGSIGYIPPEHMNG---QVSILGDI 589 (717)
Q Consensus 513 LH~~~~~~ivH~dlkp~NIll~~~~~~kl~Dfg~~~~~~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~---~~~~~sDv 589 (717)
||+. +|+||||||+||+++.+|.+||+|||++.... .......+++.|+|||++.+ .++.++||
T Consensus 210 LH~~---~ivHrDikp~NIll~~~~~~kL~DFG~a~~~~----------~~~~~~~~t~~y~aPE~~~~~~~~~~~~~Di 276 (371)
T 3q60_A 210 LQSK---GLVHGHFTPDNLFIMPDGRLMLGDVSALWKVG----------TRGPASSVPVTYAPREFLNASTATFTHALNA 276 (371)
T ss_dssp HHHT---TEEETTCSGGGEEECTTSCEEECCGGGEEETT----------CEEEGGGSCGGGCCHHHHTCSEEECCHHHHH
T ss_pred HHHC---CCccCcCCHHHEEECCCCCEEEEecceeeecC----------CCccCccCCcCCcChhhccCCCCCcCccccH
Confidence 9998 99999999999999999999999999998651 11113456799999999765 48999999
Q ss_pred hhHHHHHHHHHhCCCCCCCCCCCchhhhHHHHhcCChhhhhhcCCCCCCCCCCcHHHHHHHHHHHHHHhhhhhhhcchhh
Q 005045 590 YSYGILLLEMFTGKRPTGDMFKDDFSIHMFVSMALPDHVMDILDPSMPLDEENDEEQIEEVIEEKEMMIHIDLEVNTKNK 669 (717)
Q Consensus 590 wslG~vl~elltg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 669 (717)
|||||++|+|++|..||............. .............. .
T Consensus 277 wSlG~il~elltg~~Pf~~~~~~~~~~~~~------~~~~~~~~~~~~~~-----------------------------~ 321 (371)
T 3q60_A 277 WQLGLSIYRVWCLFLPFGLVTPGIKGSWKR------PSLRVPGTDSLAFG-----------------------------S 321 (371)
T ss_dssp HHHHHHHHHHHHSSCSTTBCCTTCTTCCCB------CCTTSCCCCSCCCT-----------------------------T
T ss_pred HHHHHHHHHHHhCCCCCCCcCcccccchhh------hhhhhccccccchh-----------------------------h
Confidence 999999999999999997654331110000 00000000000000 0
Q ss_pred hHHHHHHHHHHhhccCCCCcCCCCCHHHHHH--HHHHHHHH
Q 005045 670 LEECFVSVLRIGLMCSTTSPRERIAMNVVVN--NLKTIRNC 708 (717)
Q Consensus 670 ~~~~~~~l~~li~~cl~~~p~~Rps~~eil~--~l~~i~~~ 708 (717)
...++..+.+++.+||+.+|++|||+.|+++ .+..+..+
T Consensus 322 ~~~~~~~~~~li~~~L~~dP~~Rpt~~e~l~hp~f~~~~~~ 362 (371)
T 3q60_A 322 CTPLPDFVKTLIGRFLNFDRRRRLLPLEAMETPEFLQLQNE 362 (371)
T ss_dssp SSCCCHHHHHHHHHHTCSSTTTCCCHHHHTTSHHHHHHHHH
T ss_pred ccCCCHHHHHHHHHHcCCChhhCCCHHHHhcCHHHHHHHHH
Confidence 1122566889999999999999999999985 44444443
No 261
>4exu_A Mitogen-activated protein kinase 13; P38 kinase, transferase; 1.70A {Homo sapiens} PDB: 4eyj_A* 4eym_A* 3coi_A
Probab=100.00 E-value=5.4e-37 Score=326.00 Aligned_cols=278 Identities=20% Similarity=0.229 Sum_probs=197.4
Q ss_pred cccccccccccCcccccceEEEEeC-CCchhhhHHhHhh--hhhHHHHHHHHHHHHhcCCCCceeEEEEeeccccC-CCC
Q 005045 387 STDNFSKENLIGTGSFGSVYKGTLG-DGTIVAIKVLKLQ--QQGALKSFIDECNALKSTRHRNILRVITACSSVDL-EGN 462 (717)
Q Consensus 387 ~~~~y~~~~~ig~g~~g~v~~~~~~-~~~~vavK~~~~~--~~~~~~~~~~e~~~l~~l~h~ni~~~~~~~~~~~~-~~~ 462 (717)
..++|++.+.||+|+||.||+|.++ +|+.||+|++... .....+.+.+|+.+++.++||||+++++++..... ...
T Consensus 40 l~~~y~~~~~lG~G~~g~Vy~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~~~~~~~~~~~~~~~ 119 (371)
T 4exu_A 40 LPKTYVSPTHVGSGAYGSVCSAIDKRSGEKVAIKKLSRPFQSEIFAKRAYRELLLLKHMQHENVIGLLDVFTPASSLRNF 119 (371)
T ss_dssp EETTEEEEEEEEECSSEEEEEEEETTTTEEEEEEEECSTTSSHHHHHHHHHHHHHHHHCCCTTBCCCSEEECSCSSSTTC
T ss_pred ccccEEEEeEEecCCCeEEEEEEECCCCCEEEEEEecccccchhHHHHHHHHHHHHHhcCCCCchhhhhheeccCCcccc
Confidence 4579999999999999999999965 7999999998643 23346788899999999999999999999654321 111
Q ss_pred ceEEEEEecCCCCChhhhccCCCCCcccccccCHHHHHHHHHHHHHHHHHHHhcCCCCeeecCCCCCCEEeCCCCceEEe
Q 005045 463 DFKALVFEFMSNGNLDQWLHPSPAEHYQFKKLSVIQRLNIAIDVASALDYLHHHCDTPIAHCDLKPSNVLLDKDMTAHVG 542 (717)
Q Consensus 463 ~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~dlkp~NIll~~~~~~kl~ 542 (717)
...++||||+. ++|.+++. ..+++..+..++.||+.||+|||+. +|+||||||+||+++.++.+||+
T Consensus 120 ~~~~lv~e~~~-~~l~~~~~---------~~~~~~~~~~i~~qi~~aL~~LH~~---~ivH~Dikp~NIll~~~~~~kL~ 186 (371)
T 4exu_A 120 YDFYLVMPFMQ-TDLQKIMG---------MEFSEEKIQYLVYQMLKGLKYIHSA---GVVHRDLKPGNLAVNEDCELKIL 186 (371)
T ss_dssp CCCEEEEECCC-EEHHHHTT---------SCCCHHHHHHHHHHHHHHHHHHHHT---TCCCSCCCGGGEEECTTCCEEEC
T ss_pred eeEEEEEcccc-ccHHHHhh---------cCCCHHHHHHHHHHHHHHHHHHHHC---CCcCCCcCHHHeEECCCCCEEEE
Confidence 23499999996 68888874 4489999999999999999999998 99999999999999999999999
Q ss_pred eeccchhcccccCCCCCCcceeecccccccccCCCccCC--CCCcccchhhHHHHHHHHHhCCCCCCCCCCCchhhhHHH
Q 005045 543 DFGLAKFLFEISDNPSKNQTVSIGLKGSIGYIPPEHMNG--QVSILGDIYSYGILLLEMFTGKRPTGDMFKDDFSIHMFV 620 (717)
Q Consensus 543 Dfg~~~~~~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~--~~~~~sDvwslG~vl~elltg~~p~~~~~~~~~~~~~~~ 620 (717)
|||.+..... ......+|+.|+|||++.+ .++.++|||||||++|+|++|..||......+.......
T Consensus 187 Dfg~a~~~~~----------~~~~~~~t~~y~aPE~~~~~~~~~~~~DiwslG~il~el~~g~~pf~~~~~~~~~~~i~~ 256 (371)
T 4exu_A 187 DFGLARHADA----------EMTGYVVTRWYRAPEVILSWMHYNQTVDIWSVGCIMAEMLTGKTLFKGKDYLDQLTQILK 256 (371)
T ss_dssp STTCC------------------CTTCCCTTSCHHHHSCCSCCCTTHHHHHHHHHHHHHHHSSCSCCCSSHHHHHHHHHH
T ss_pred ecCccccccc----------CcCCcccCccccCHHHhcCCCCCCcHHhHHHHHHHHHHHHhCCCCCCCCChHHHHHHHHH
Confidence 9999986421 1233568999999999655 589999999999999999999999976432211111100
Q ss_pred HhcC-ChhhhhhcCCCCCCCCCCcHHHHHHHHHHHHHHhhhhhhhcchhhhHHHHHHHHHHhhccCCCCcCCCCCHHHHH
Q 005045 621 SMAL-PDHVMDILDPSMPLDEENDEEQIEEVIEEKEMMIHIDLEVNTKNKLEECFVSVLRIGLMCSTTSPRERIAMNVVV 699 (717)
Q Consensus 621 ~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~cl~~~p~~Rps~~eil 699 (717)
.... +......+.. .......... .-.....-....+.++..+.+++.+||+.+|++|||++|++
T Consensus 257 ~~~~~~~~~~~~~~~----------~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~Rpt~~ell 322 (371)
T 4exu_A 257 VTGVPGTEFVQKLND----------KAAKSYIQSL----PQTPRKDFTQLFPRASPQAADLLEKMLELDVDKRLTAAQAL 322 (371)
T ss_dssp HHCCCCHHHHTTCSC----------HHHHHHHHHS----CCCCCCCHHHHSTTSCHHHHHHHHHHSCSCTTTSCCHHHHH
T ss_pred HhCCCcHHHHHHhhh----------hhhhhhhhcc----CCCcchhHHHhccccChHHHHHHHHHCCCChhhcCCHHHHh
Confidence 0111 1111111100 0000000000 00000000011123466789999999999999999999998
Q ss_pred HH
Q 005045 700 NN 701 (717)
Q Consensus 700 ~~ 701 (717)
+.
T Consensus 323 ~h 324 (371)
T 4exu_A 323 TH 324 (371)
T ss_dssp TS
T ss_pred cC
Confidence 63
No 262
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=100.00 E-value=2.4e-35 Score=308.46 Aligned_cols=291 Identities=19% Similarity=0.216 Sum_probs=217.9
Q ss_pred CCCCCEEEccCccccccCCccccCCCCCCEEeccCCcCcccCChhhhccCCCCeEeccCCCCCCCCCccccCCCCccEEE
Q 005045 57 LTKLEIIGLGGSNLTGNVPAWIGNFSSLKALSLAWNNLRGSIPNELGQLSGLGFFTLYGNFISGIIPSSIYNISSIYYFS 136 (717)
Q Consensus 57 l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~ 136 (717)
..+++.++++++.++ .+|..+. ++|+.|+|++|+|++..+..|.++++|++|+|++|.++++.|..|.++++|++|+
T Consensus 30 ~c~l~~l~~~~~~l~-~lp~~~~--~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ 106 (330)
T 1xku_A 30 QCHLRVVQCSDLGLE-KVPKDLP--PDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLY 106 (330)
T ss_dssp EEETTEEECTTSCCC-SCCCSCC--TTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEE
T ss_pred cCCCeEEEecCCCcc-ccCccCC--CCCeEEECCCCcCCEeChhhhccCCCCCEEECCCCcCCeeCHHHhcCCCCCCEEE
Confidence 346777777777777 5565554 5677777777777766666777777777777777777777777777777777777
Q ss_pred cccCcccccCCcccccCCCCcceeecccccccccCCccCCCCCCCCEEeccCccccc--cCCCCccCCCCCCeeeccccc
Q 005045 137 VTQNQLHGQLPTDVGLTLPNLKIFAGAVNYFTGSIPVSLSNASNLQVLDFAENGLTG--TIPGNFGSLKDLVRLNFDQNE 214 (717)
Q Consensus 137 L~~N~l~~~l~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~--~~~~~~~~l~~L~~L~l~~N~ 214 (717)
|++|.++ .+|..++ ++|+.|++++|.+.+..+..|.++++|++|++++|.++. ..+..|..+++|+.|++++|.
T Consensus 107 Ls~n~l~-~l~~~~~---~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~ 182 (330)
T 1xku_A 107 LSKNQLK-ELPEKMP---KTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTN 182 (330)
T ss_dssp CCSSCCS-BCCSSCC---TTCCEEECCSSCCCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSSC
T ss_pred CCCCcCC-ccChhhc---ccccEEECCCCcccccCHhHhcCCccccEEECCCCcCCccCcChhhccCCCCcCEEECCCCc
Confidence 7777776 6666554 677777777777776666667777888888888887753 556677778888888888888
Q ss_pred cCCcccCchhhhhhhccCCCCCEEEeecCcccCcCchhhhhccccccEEecCCCccCCCCCccccCCCCCCEEEccCCcC
Q 005045 215 LGSREIGDLNFLKFLANCTSLEVLGLARNSFGGEMPISIANLSTHLRRLTMGENLMHGNIPVGIGNLVNLNLLGLEGNNL 294 (717)
Q Consensus 215 l~~~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~~~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~L~~N~l 294 (717)
++.++.. + .++|++|++++|.+++..|..+..+ ++|++|++++|.+++..+..|..+++|+.|+|++|++
T Consensus 183 l~~l~~~-------~--~~~L~~L~l~~n~l~~~~~~~~~~l-~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l 252 (330)
T 1xku_A 183 ITTIPQG-------L--PPSLTELHLDGNKITKVDAASLKGL-NNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKL 252 (330)
T ss_dssp CCSCCSS-------C--CTTCSEEECTTSCCCEECTGGGTTC-TTCCEEECCSSCCCEECTTTGGGSTTCCEEECCSSCC
T ss_pred cccCCcc-------c--cccCCEEECCCCcCCccCHHHhcCC-CCCCEEECCCCcCceeChhhccCCCCCCEEECCCCcC
Confidence 7776521 1 2678888888888886666777766 4888888888888877777888888888888888888
Q ss_pred ccccchhhhcCCCCCeEEcccCcCCCCCCcccccc------cccceeecccccccc--cCCcCccCcCCCceEEeeccc
Q 005045 295 SGSVPEVIGRLNKLEGLGLNVNKFSGLIPSSLGNL------TILTRLWMEENRLEG--SIPPSLGNCQKLLVLNLSSND 365 (717)
Q Consensus 295 ~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l------~~L~~L~L~~N~l~~--~~p~~~~~l~~L~~L~l~~N~ 365 (717)
+ .+|..+..+++|++|+|++|+++++.+..|... +.|+.|++++|++.. ..|..|..+++++.++|++|.
T Consensus 253 ~-~lp~~l~~l~~L~~L~l~~N~i~~~~~~~f~~~~~~~~~~~l~~l~l~~N~~~~~~i~~~~f~~~~~l~~l~L~~N~ 330 (330)
T 1xku_A 253 V-KVPGGLADHKYIQVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQYWEIQPSTFRCVYVRAAVQLGNYK 330 (330)
T ss_dssp S-SCCTTTTTCSSCCEEECCSSCCCCCCTTSSSCSSCCTTSCCCSEEECCSSSSCGGGSCGGGGTTCCCGGGEEC----
T ss_pred c-cCChhhccCCCcCEEECCCCcCCccChhhcCCcccccccccccceEeecCcccccccCccccccccceeEEEecccC
Confidence 8 677788888888888888888888877777543 678889999998863 566788888899999998884
No 263
>1x8b_A WEE1HU, WEE1-like protein kinase; cell cycle, transferase; HET: 824; 1.81A {Homo sapiens} PDB: 3bi6_A* 3biz_A* 3cqe_A* 3cr0_A* 2in6_A* 2io6_A* 2z2w_A*
Probab=100.00 E-value=2.1e-37 Score=317.57 Aligned_cols=247 Identities=20% Similarity=0.282 Sum_probs=193.1
Q ss_pred ccccccccccccCcccccceEEEEeC-CCchhhhHHhHhh--hhhHHHHHHHHHHHHhcC-CCCceeEEEEeeccccCCC
Q 005045 386 KSTDNFSKENLIGTGSFGSVYKGTLG-DGTIVAIKVLKLQ--QQGALKSFIDECNALKST-RHRNILRVITACSSVDLEG 461 (717)
Q Consensus 386 ~~~~~y~~~~~ig~g~~g~v~~~~~~-~~~~vavK~~~~~--~~~~~~~~~~e~~~l~~l-~h~ni~~~~~~~~~~~~~~ 461 (717)
...++|++.+.||+|++|.||+|.+. +++.||+|++... .......+.+|+..+..+ +||||+++++++. +
T Consensus 8 ~~~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~e~~~~~~l~~h~~iv~~~~~~~-----~ 82 (289)
T 1x8b_A 8 RYTTEFHELEKIGSGEFGSVFKCVKRLDGCIYAIKRSKKPLAGSVDEQNALREVYAHAVLGQHSHVVRYFSAWA-----E 82 (289)
T ss_dssp HHHHHEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEECCCTTSHHHHHHHHHHHHHHHSCSCTTBCCEEEEEE-----E
T ss_pred cccchhhhhhhhcCCCceEEEEEEEcCCCceEEEEEecccccccHHHHHHHHHHHHHHHhCCCCCeeeeeeeee-----c
Confidence 34678999999999999999999976 8999999998743 233456788899999999 9999999999954 3
Q ss_pred CceEEEEEecCCCCChhhhccCCCCCcccccccCHHHHHHHHHHHHHHHHHHHhcCCCCeeecCCCCCCEEeCCC-----
Q 005045 462 NDFKALVFEFMSNGNLDQWLHPSPAEHYQFKKLSVIQRLNIAIDVASALDYLHHHCDTPIAHCDLKPSNVLLDKD----- 536 (717)
Q Consensus 462 ~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~dlkp~NIll~~~----- 536 (717)
.+..++||||+++++|.+++..... ....+++..+..++.||+.||+|||+. +|+||||||+||+++.+
T Consensus 83 ~~~~~lv~e~~~~~~L~~~l~~~~~---~~~~~~~~~~~~i~~qi~~al~~lH~~---~ivH~Dikp~NIl~~~~~~~~~ 156 (289)
T 1x8b_A 83 DDHMLIQNEYCNGGSLADAISENYR---IMSYFKEAELKDLLLQVGRGLRYIHSM---SLVHMDIKPSNIFISRTSIPNA 156 (289)
T ss_dssp TTEEEEEEECCTTCBHHHHHHHHHH---HTCCCCHHHHHHHHHHHHHHHHHHHHT---TEECSCCSGGGEEEC-------
T ss_pred CCeEEEEEEecCCCcHHHHHHhhcc---cccCCCHHHHHHHHHHHHHHHHHHHhC---CEeecCCCHHHEEEcCCCCCcc
Confidence 4589999999999999999874310 114589999999999999999999998 99999999999999844
Q ss_pred --------------CceEEeeeccchhcccccCCCCCCcceeecccccccccCCCccCCC--CCcccchhhHHHHHHHHH
Q 005045 537 --------------MTAHVGDFGLAKFLFEISDNPSKNQTVSIGLKGSIGYIPPEHMNGQ--VSILGDIYSYGILLLEMF 600 (717)
Q Consensus 537 --------------~~~kl~Dfg~~~~~~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~--~~~~sDvwslG~vl~ell 600 (717)
+.+||+|||.+..... .....|++.|+|||++.+. ++.++|||||||++|+|+
T Consensus 157 ~~~~~~~~~~~~~~~~~kl~Dfg~~~~~~~-----------~~~~~gt~~y~aPE~~~~~~~~~~~~Di~slG~il~~l~ 225 (289)
T 1x8b_A 157 ASEEGDEDDWASNKVMFKIGDLGHVTRISS-----------PQVEEGDSRFLANEVLQENYTHLPKADIFALALTVVCAA 225 (289)
T ss_dssp -------------CCCEEECCCTTCEETTC-----------SCCCCCCGGGCCHHHHTTCCTTHHHHHHHHHHHHHHHHT
T ss_pred cccccccccccCCceEEEEcccccccccCC-----------ccccCCCccccChhHhcCCCCCCchhhHHHHHHHHHHHh
Confidence 4799999999886521 1123489999999997664 457999999999999999
Q ss_pred hCCCCCCCCCCCchhhhHHHHhcCChhhhhhcCCCCCCCCCCcHHHHHHHHHHHHHHhhhhhhhcchhhhHHHHHHHHHH
Q 005045 601 TGKRPTGDMFKDDFSIHMFVSMALPDHVMDILDPSMPLDEENDEEQIEEVIEEKEMMIHIDLEVNTKNKLEECFVSVLRI 680 (717)
Q Consensus 601 tg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l 680 (717)
+|..|+... ..... +.....+.. +..++..+.++
T Consensus 226 ~~~~~~~~~----~~~~~------------~~~~~~~~~------------------------------~~~~~~~~~~l 259 (289)
T 1x8b_A 226 GAEPLPRNG----DQWHE------------IRQGRLPRI------------------------------PQVLSQEFTEL 259 (289)
T ss_dssp TCCCCCSSS----HHHHH------------HHTTCCCCC------------------------------SSCCCHHHHHH
T ss_pred cCCCCCcch----hHHHH------------HHcCCCCCC------------------------------CcccCHHHHHH
Confidence 998876432 11111 111111100 01125567899
Q ss_pred hhccCCCCcCCCCCHHHHHH
Q 005045 681 GLMCSTTSPRERIAMNVVVN 700 (717)
Q Consensus 681 i~~cl~~~p~~Rps~~eil~ 700 (717)
+.+||+.+|++|||+.|+++
T Consensus 260 i~~~l~~dp~~Rps~~~ll~ 279 (289)
T 1x8b_A 260 LKVMIHPDPERRPSAMALVK 279 (289)
T ss_dssp HHHHTCSSGGGSCCHHHHHT
T ss_pred HHHHhCCCcccCCCHHHHhh
Confidence 99999999999999999986
No 264
>2b9h_A MAP kinase FUS3, mitogen-activated protein kinase FUS3; transferase; HET: ADP; 1.55A {Saccharomyces cerevisiae} PDB: 2b9i_A* 2b9j_A* 2f49_A 2fa2_A 2b9f_A* 2f9g_A*
Probab=100.00 E-value=1.2e-36 Score=321.57 Aligned_cols=291 Identities=22% Similarity=0.278 Sum_probs=203.8
Q ss_pred ccccccccccccCcccccceEEEEeC-CCchhhhHHhHhh-hhhHHHHHHHHHHHHhcCCCCceeEEEEeeccccCCCCc
Q 005045 386 KSTDNFSKENLIGTGSFGSVYKGTLG-DGTIVAIKVLKLQ-QQGALKSFIDECNALKSTRHRNILRVITACSSVDLEGND 463 (717)
Q Consensus 386 ~~~~~y~~~~~ig~g~~g~v~~~~~~-~~~~vavK~~~~~-~~~~~~~~~~e~~~l~~l~h~ni~~~~~~~~~~~~~~~~ 463 (717)
...++|++.+.||+|+||.||+|.+. +|+.||+|++... .......+.+|++++++++||||+++++++....+....
T Consensus 8 ~i~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~~~ 87 (353)
T 2b9h_A 8 NISSDFQLKSLLGEGAYGVVCSATHKPTGEIVAIKKIEPFDKPLFALRTLREIKILKHFKHENIITIFNIQRPDSFENFN 87 (353)
T ss_dssp CSCTTEEEEEEEEECSSEEEEEEEETTTTEEEEEEEECCCSSHHHHHHHHHHHHHHHHCCCTTBCCEEEECCCSCSTTCC
T ss_pred ccccceEEeeEEcCCCCeEEEEEEECCCCcEEEEEeecccccchHHHHHHHHHHHHHhCcCCCcCCeeeeecccccCccc
Confidence 45689999999999999999999965 7999999998643 233456788999999999999999999987655455567
Q ss_pred eEEEEEecCCCCChhhhccCCCCCcccccccCHHHHHHHHHHHHHHHHHHHhcCCCCeeecCCCCCCEEeCCCCceEEee
Q 005045 464 FKALVFEFMSNGNLDQWLHPSPAEHYQFKKLSVIQRLNIAIDVASALDYLHHHCDTPIAHCDLKPSNVLLDKDMTAHVGD 543 (717)
Q Consensus 464 ~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~dlkp~NIll~~~~~~kl~D 543 (717)
..++||||+. ++|.+++.. ..+++..+..++.||+.||+|||+. +|+||||||+||+++.++.+||+|
T Consensus 88 ~~~lv~e~~~-~~L~~~~~~--------~~~~~~~~~~~~~qi~~~L~~LH~~---~ivH~Dlkp~Nil~~~~~~~kl~D 155 (353)
T 2b9h_A 88 EVYIIQELMQ-TDLHRVIST--------QMLSDDHIQYFIYQTLRAVKVLHGS---NVIHRDLKPSNLLINSNCDLKVCD 155 (353)
T ss_dssp CEEEEECCCS-EEHHHHHHH--------CCCCHHHHHHHHHHHHHHHHHHHHT---TEECSCCCGGGEEECTTCCEEECC
T ss_pred eEEEEEeccC-ccHHHHHhh--------cCCCHHHHHHHHHHHHHHHHHHHHC---CeecCCCCHHHeEEcCCCcEEEEe
Confidence 8999999996 689988863 3589999999999999999999998 999999999999999999999999
Q ss_pred eccchhcccccCCCCC---CcceeecccccccccCCCccC--CCCCcccchhhHHHHHHHHHhCCCCCCCCCCCchhhhH
Q 005045 544 FGLAKFLFEISDNPSK---NQTVSIGLKGSIGYIPPEHMN--GQVSILGDIYSYGILLLEMFTGKRPTGDMFKDDFSIHM 618 (717)
Q Consensus 544 fg~~~~~~~~~~~~~~---~~~~~~~~~~~~~y~aPE~~~--~~~~~~sDvwslG~vl~elltg~~p~~~~~~~~~~~~~ 618 (717)
||.+............ .........||+.|+|||++. +.++.++|||||||++|+|++|..||............
T Consensus 156 fg~a~~~~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~Di~slG~il~~l~~g~~pf~~~~~~~~~~~~ 235 (353)
T 2b9h_A 156 FGLARIIDESAADNSEPTGQQSGMVEFVATRWYRAPEVMLTSAKYSRAMDVWSCGCILAELFLRRPIFPGRDYRHQLLLI 235 (353)
T ss_dssp CTTCEECC----------------CCCCCCGGGCCHHHHHSCCCCCHHHHHHHHHHHHHHHHHSSCSCCCSSHHHHHHHH
T ss_pred cccccccccccccccCccccccchhhccccccccCCeeeccCCCccchhhHHHHHHHHHHHHhCCCCCCCCCcHHHHHHH
Confidence 9999876322111110 011122356899999999853 45899999999999999999999999765322111100
Q ss_pred HHHhcCChhhhhhcCCCCCCCCCCcHHHHHHHHHHHHHHhhhhhhhcchhhhHHHHHHHHHHhhccCCCCcCCCCCHHHH
Q 005045 619 FVSMALPDHVMDILDPSMPLDEENDEEQIEEVIEEKEMMIHIDLEVNTKNKLEECFVSVLRIGLMCSTTSPRERIAMNVV 698 (717)
Q Consensus 619 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~cl~~~p~~Rps~~ei 698 (717)
......+.. +..... .......+...... ...........+.++..+.+++.+||+.||++|||++|+
T Consensus 236 ~~~~~~~~~-----~~~~~~---~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~Rpt~~el 303 (353)
T 2b9h_A 236 FGIIGTPHS-----DNDLRC---IESPRAREYIKSLP----MYPAAPLEKMFPRVNPKGIDLLQRMLVFDPAKRITAKEA 303 (353)
T ss_dssp HHHHCCCCS-----TTTTTT---CCCHHHHHHHHTSC----CCCCCCHHHHSTTSCHHHHHHHHHHSCSSGGGSCCHHHH
T ss_pred HHHhCCCch-----hccccc---cccchhhHHhhccc----CCCCcchhhhcccCCHHHHHHHHHhcCcCcccCCCHHHH
Confidence 000000000 000000 00000111110000 000000001112346678899999999999999999999
Q ss_pred HH
Q 005045 699 VN 700 (717)
Q Consensus 699 l~ 700 (717)
++
T Consensus 304 l~ 305 (353)
T 2b9h_A 304 LE 305 (353)
T ss_dssp HT
T ss_pred hc
Confidence 86
No 265
>2j0j_A Focal adhesion kinase 1; cell migration, FERM, transferase, integrin signaling; HET: 4ST; 2.80A {Gallus gallus} PDB: 2j0k_A*
Probab=100.00 E-value=8.1e-37 Score=346.32 Aligned_cols=264 Identities=21% Similarity=0.346 Sum_probs=205.0
Q ss_pred ccccccccccccccccCcccccceEEEEeC----CCchhhhHHhHhh-hhhHHHHHHHHHHHHhcCCCCceeEEEEeecc
Q 005045 382 SDISKSTDNFSKENLIGTGSFGSVYKGTLG----DGTIVAIKVLKLQ-QQGALKSFIDECNALKSTRHRNILRVITACSS 456 (717)
Q Consensus 382 ~~~~~~~~~y~~~~~ig~g~~g~v~~~~~~----~~~~vavK~~~~~-~~~~~~~~~~e~~~l~~l~h~ni~~~~~~~~~ 456 (717)
.+.....++|++.+.||+|+||.||+|.+. .+..||+|.+... .....+.+.+|+.++++++||||+++++++.
T Consensus 383 ~~~~i~~~~y~i~~~LG~G~fG~Vy~a~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~E~~~l~~l~HpnIv~l~~~~~- 461 (656)
T 2j0j_A 383 RDYEIQRERIELGRCIGEGQFGDVHQGIYMSPENPAMAVAIKTCKNCTSDSVREKFLQEALTMRQFDHPHIVKLIGVIT- 461 (656)
T ss_dssp GGTBCCGGGEEEEEEEECCSSCCEEEEEECCSSSCCEEEEEEECSSTTCHHHHHHHHHHHHHHHHCCCTTBCCEEEEEC-
T ss_pred cccccccccEEEeeEEeeCCCEEEEEEEEecCCCccEEEEEEEecccCCHHHHHHHHHHHHHHHhCCCCCCCeEEEEEe-
Confidence 345556789999999999999999999864 2456899987643 3344578899999999999999999999852
Q ss_pred ccCCCCceEEEEEecCCCCChhhhccCCCCCcccccccCHHHHHHHHHHHHHHHHHHHhcCCCCeeecCCCCCCEEeCCC
Q 005045 457 VDLEGNDFKALVFEFMSNGNLDQWLHPSPAEHYQFKKLSVIQRLNIAIDVASALDYLHHHCDTPIAHCDLKPSNVLLDKD 536 (717)
Q Consensus 457 ~~~~~~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~dlkp~NIll~~~ 536 (717)
.+..++||||+++++|.+++.... ..+++..+..++.||+.||+|||+. +|+||||||+||+++.+
T Consensus 462 -----~~~~~lv~E~~~~g~L~~~l~~~~------~~l~~~~~~~i~~qi~~aL~~LH~~---givHrDikp~NILl~~~ 527 (656)
T 2j0j_A 462 -----ENPVWIIMELCTLGELRSFLQVRK------FSLDLASLILYAYQLSTALAYLESK---RFVHRDIAARNVLVSSN 527 (656)
T ss_dssp -----SSSCEEEEECCTTCBHHHHHHHTT------TTCCHHHHHHHHHHHHHHHHHHHHT---TCCCSCCSGGGEEEEET
T ss_pred -----cCceEEEEEcCCCCcHHHHHHhcc------CCCCHHHHHHHHHHHHHHHHHHHhC---CccccccchHhEEEeCC
Confidence 235799999999999999997442 4589999999999999999999998 99999999999999999
Q ss_pred CceEEeeeccchhcccccCCCCCCcceeecccccccccCCCccC-CCCCcccchhhHHHHHHHHHh-CCCCCCCCCCCch
Q 005045 537 MTAHVGDFGLAKFLFEISDNPSKNQTVSIGLKGSIGYIPPEHMN-GQVSILGDIYSYGILLLEMFT-GKRPTGDMFKDDF 614 (717)
Q Consensus 537 ~~~kl~Dfg~~~~~~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~-~~~~~~sDvwslG~vl~ellt-g~~p~~~~~~~~~ 614 (717)
+.+||+|||++...... .........+++.|+|||++. +.++.++|||||||++|||++ |..||......+
T Consensus 528 ~~vkL~DFG~a~~~~~~------~~~~~~~~~~t~~y~aPE~~~~~~~~~~~DiwSlG~il~ellt~g~~Pf~~~~~~~- 600 (656)
T 2j0j_A 528 DCVKLGDFGLSRYMEDS------TYYKASKGKLPIKWMAPESINFRRFTSASDVWMFGVCMWEILMHGVKPFQGVKNND- 600 (656)
T ss_dssp TEEEECCCCCCCSCCC----------------CCGGGCCHHHHHHCCCCHHHHHHHHHHHHHHHHTTSCCTTTTCCHHH-
T ss_pred CCEEEEecCCCeecCCC------cceeccCCCCCcceeCHHHhcCCCCCchhhHHHHHHHHHHHHHcCCCCCCCCCHHH-
Confidence 99999999999865211 111122344678899999965 458999999999999999997 999997642221
Q ss_pred hhhHHHHhcCChhhhhhcCCCCCCCCCCcHHHHHHHHHHHHHHhhhhhhhcchhhhHHHHHHHHHHhhccCCCCcCCCCC
Q 005045 615 SIHMFVSMALPDHVMDILDPSMPLDEENDEEQIEEVIEEKEMMIHIDLEVNTKNKLEECFVSVLRIGLMCSTTSPRERIA 694 (717)
Q Consensus 615 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~cl~~~p~~Rps 694 (717)
........ .... .+..++..+.+++.+||+.+|++|||
T Consensus 601 -~~~~i~~~--------~~~~---------------------------------~~~~~~~~l~~li~~~l~~dP~~RPs 638 (656)
T 2j0j_A 601 -VIGRIENG--------ERLP---------------------------------MPPNCPPTLYSLMTKCWAYDPSRRPR 638 (656)
T ss_dssp -HHHHHHHT--------CCCC---------------------------------CCTTCCHHHHHHHHHHTCSSGGGSCC
T ss_pred -HHHHHHcC--------CCCC---------------------------------CCccccHHHHHHHHHHcCCChhHCcC
Confidence 11111000 0000 11223567889999999999999999
Q ss_pred HHHHHHHHHHHHHHH
Q 005045 695 MNVVVNNLKTIRNCF 709 (717)
Q Consensus 695 ~~eil~~l~~i~~~~ 709 (717)
+.||++.|+++.++.
T Consensus 639 ~~el~~~L~~il~~~ 653 (656)
T 2j0j_A 639 FTELKAQLSTILEEE 653 (656)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHh
Confidence 999999999998654
No 266
>4e7w_A Glycogen synthase kinase 3; GSK3, PTyr195, transferase; HET: PTR; 3.30A {Ustilago maydis}
Probab=100.00 E-value=8.2e-37 Score=326.87 Aligned_cols=275 Identities=20% Similarity=0.246 Sum_probs=194.0
Q ss_pred ccccccccccccCcccccceEEEEeCCCchhhhHHhHhhhhhHHHHHHHHHHHHhcCCCCceeEEEEeeccccC-CCCce
Q 005045 386 KSTDNFSKENLIGTGSFGSVYKGTLGDGTIVAIKVLKLQQQGALKSFIDECNALKSTRHRNILRVITACSSVDL-EGNDF 464 (717)
Q Consensus 386 ~~~~~y~~~~~ig~g~~g~v~~~~~~~~~~vavK~~~~~~~~~~~~~~~e~~~l~~l~h~ni~~~~~~~~~~~~-~~~~~ 464 (717)
....+|++.+.||+|+||.||+|++..+..+|+|.+.... ....+|+++++.++||||+++++++..... .+...
T Consensus 37 ~~~~~Y~~~~~lG~G~~g~V~~a~~~~~~~~aikk~~~~~----~~~~~E~~il~~l~h~niv~l~~~~~~~~~~~~~~~ 112 (394)
T 4e7w_A 37 QREIAYTNCKVIGNGSFGVVFQAKLVESDEVAIKKVLQDK----RFKNRELQIMRIVKHPNVVDLKAFFYSNGDKKDEVF 112 (394)
T ss_dssp EEEEEEEEEEEEEEETTEEEEEEEETTTEEEEEEEEECCT----TSCCHHHHHHHTCCCTTBCCEEEEEEEESSSSSCEE
T ss_pred cccceEEEeEEEeeCCCeEEEEEEECCCCeEEEEEEecCc----chHHHHHHHHHhCCCCCcceEEEEEEecCCCCCceE
Confidence 3466899999999999999999998766668888775432 122369999999999999999998755432 33445
Q ss_pred EEEEEecCCCCChhhhccCCCCCcccccccCHHHHHHHHHHHHHHHHHHHhcCCCCeeecCCCCCCEEeC-CCCceEEee
Q 005045 465 KALVFEFMSNGNLDQWLHPSPAEHYQFKKLSVIQRLNIAIDVASALDYLHHHCDTPIAHCDLKPSNVLLD-KDMTAHVGD 543 (717)
Q Consensus 465 ~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~dlkp~NIll~-~~~~~kl~D 543 (717)
.++||||++++ +.+.+..... ....+++..++.++.||+.||+|||+. +|+||||||+||+++ .++.+||+|
T Consensus 113 ~~lv~e~~~~~-l~~~~~~~~~---~~~~~~~~~~~~~~~qi~~aL~~LH~~---~ivHrDlkp~Nill~~~~~~~kL~D 185 (394)
T 4e7w_A 113 LNLVLEYVPET-VYRASRHYAK---LKQTMPMLLIKLYMYQLLRSLAYIHSI---GICHRDIKPQNLLLDPPSGVLKLID 185 (394)
T ss_dssp EEEEEECCSEE-HHHHHHHHHH---TTSCCCHHHHHHHHHHHHHHHHHHHHT---TEECSCCSGGGEEEETTTTEEEECC
T ss_pred EEEEeeccCcc-HHHHHHHHHh---hcCCCCHHHHHHHHHHHHHHHHHHHHC---CccCCCCCHHHEEEcCCCCcEEEee
Confidence 88999999764 4333321000 115689999999999999999999998 999999999999999 799999999
Q ss_pred eccchhcccccCCCCCCcceeecccccccccCCCccCC--CCCcccchhhHHHHHHHHHhCCCCCCCCCCCchhhhHHHH
Q 005045 544 FGLAKFLFEISDNPSKNQTVSIGLKGSIGYIPPEHMNG--QVSILGDIYSYGILLLEMFTGKRPTGDMFKDDFSIHMFVS 621 (717)
Q Consensus 544 fg~~~~~~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~--~~~~~sDvwslG~vl~elltg~~p~~~~~~~~~~~~~~~~ 621 (717)
||.++..... .......+|+.|+|||++.+ .++.++||||+||++|+|++|+.||.+....+. +.....
T Consensus 186 FG~a~~~~~~--------~~~~~~~~t~~y~aPE~~~~~~~~~~~~DiwSlG~il~ell~g~~pf~~~~~~~~-l~~i~~ 256 (394)
T 4e7w_A 186 FGSAKILIAG--------EPNVSYICSRYYRAPELIFGATNYTTNIDIWSTGCVMAELMQGQPLFPGESGIDQ-LVEIIK 256 (394)
T ss_dssp CTTCEECCTT--------CCCCSSCSCGGGCCHHHHTTCSSCCTHHHHHHHHHHHHHHHHSSCSSCCSSHHHH-HHHHHH
T ss_pred CCCcccccCC--------CCCcccccCcCccCHHHHcCCCCCCcHHHHHHHHHHHHHHHhCCCCCCCCCHHHH-HHHHHH
Confidence 9999865211 11223568999999999754 489999999999999999999999976532221 111111
Q ss_pred h-cCCh--hhh----hhcCCCCCCCCCCcHHHHHHHHHHHHHHhhhhhhhcchhhhHHHHHHHHHHhhccCCCCcCCCCC
Q 005045 622 M-ALPD--HVM----DILDPSMPLDEENDEEQIEEVIEEKEMMIHIDLEVNTKNKLEECFVSVLRIGLMCSTTSPRERIA 694 (717)
Q Consensus 622 ~-~~~~--~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~cl~~~p~~Rps 694 (717)
. ..+. .+. .+.....+......... .....++..+.+++.+||+.+|++|||
T Consensus 257 ~~g~p~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------------~~~~~~~~~~~~li~~~L~~dP~~R~t 315 (394)
T 4e7w_A 257 VLGTPSREQIKTMNPNYMEHKFPQIRPHPFSK---------------------VFRPRTPPDAIDLISRLLEYTPSARLT 315 (394)
T ss_dssp HHCCCCHHHHHHHCGGGSSSCCCCCCCCCHHH---------------------HSCTTCCHHHHHHHHHHCCSSGGGSCC
T ss_pred HhCCCCHHHHHhhChhhhhhccccccCCcHHH---------------------hccccCCHHHHHHHHHHhCCChhhCCC
Confidence 1 1110 011 11111111100000000 001123557889999999999999999
Q ss_pred HHHHHHH
Q 005045 695 MNVVVNN 701 (717)
Q Consensus 695 ~~eil~~ 701 (717)
+.|+++.
T Consensus 316 ~~e~l~h 322 (394)
T 4e7w_A 316 AIEALCH 322 (394)
T ss_dssp HHHHHTS
T ss_pred HHHHhcC
Confidence 9999863
No 267
>1wak_A Serine/threonine-protein kinase SPRK1; SRPK, transferase, alternative splicing, ATP-binding, chromosome partition, differentiation, mRNA processing; 1.73A {Homo sapiens} PDB: 1wbp_A* 3beg_A* 2x7g_A*
Probab=100.00 E-value=1.2e-36 Score=327.10 Aligned_cols=283 Identities=20% Similarity=0.261 Sum_probs=201.7
Q ss_pred ccccccccccccCcccccceEEEEeC-CCchhhhHHhHhhhhhHHHHHHHHHHHHhcCC--------CCceeEEEEeecc
Q 005045 386 KSTDNFSKENLIGTGSFGSVYKGTLG-DGTIVAIKVLKLQQQGALKSFIDECNALKSTR--------HRNILRVITACSS 456 (717)
Q Consensus 386 ~~~~~y~~~~~ig~g~~g~v~~~~~~-~~~~vavK~~~~~~~~~~~~~~~e~~~l~~l~--------h~ni~~~~~~~~~ 456 (717)
...++|++.++||+|+||.||+|++. +++.||+|++.... ...+.+.+|+++++++. |+||+++++.+..
T Consensus 34 ~~~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~-~~~~~~~~E~~~l~~l~~~~~~~~~~~~iv~~~~~~~~ 112 (397)
T 1wak_A 34 LFNGRYHVIRKLGWGHFSTVWLSWDIQGKKFVAMKVVKSAE-HYTETALDEIRLLKSVRNSDPNDPNREMVVQLLDDFKI 112 (397)
T ss_dssp EETTTEEEEEEEEECSSEEEEEEEETTTTEEEEEEEECSCH-HHHHHHHHHHHHHHHHHHSCTTCGGGGGBCCEEEEEEE
T ss_pred hcCCeEEEEEEeeecCCeeEEEEEecCCCeEEEEEEEecCC-cchHHHHHHHHHHHHHhhcCCCCCCcceeeeeecceee
Confidence 34689999999999999999999964 78999999987442 34567889999999885 7889999998653
Q ss_pred ccCCCCceEEEEEecCCCCChhhhccCCCCCcccccccCHHHHHHHHHHHHHHHHHHHhcCCCCeeecCCCCCCEEeCCC
Q 005045 457 VDLEGNDFKALVFEFMSNGNLDQWLHPSPAEHYQFKKLSVIQRLNIAIDVASALDYLHHHCDTPIAHCDLKPSNVLLDKD 536 (717)
Q Consensus 457 ~~~~~~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~dlkp~NIll~~~ 536 (717)
.. ......++||||+ ++++.+++.... ...+++..++.++.||+.||+|||+.+ ||+||||||+||+++.+
T Consensus 113 ~~-~~~~~~~lv~e~~-~~~l~~~~~~~~-----~~~~~~~~~~~i~~qi~~aL~~lH~~~--givHrDikp~NIll~~~ 183 (397)
T 1wak_A 113 SG-VNGTHICMVFEVL-GHHLLKWIIKSN-----YQGLPLPCVKKIIQQVLQGLDYLHTKC--RIIHTDIKPENILLSVN 183 (397)
T ss_dssp EE-TTEEEEEEEECCC-CCBHHHHHHHTT-----TSCCCHHHHHHHHHHHHHHHHHHHHTT--CEECCCCSGGGEEECCC
T ss_pred cC-CCCceEEEEEecc-CccHHHHHHhcc-----cCCCCHHHHHHHHHHHHHHHHHHHHhC--CEecCCCCHHHeeEecc
Confidence 21 2455899999999 567766665332 146899999999999999999999942 89999999999999977
Q ss_pred C-------------------------------------------------ceEEeeeccchhcccccCCCCCCcceeecc
Q 005045 537 M-------------------------------------------------TAHVGDFGLAKFLFEISDNPSKNQTVSIGL 567 (717)
Q Consensus 537 ~-------------------------------------------------~~kl~Dfg~~~~~~~~~~~~~~~~~~~~~~ 567 (717)
+ .+||+|||.+..... .....
T Consensus 184 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kl~DfG~a~~~~~----------~~~~~ 253 (397)
T 1wak_A 184 EQYIRRLAAEATEWQRSGAPPPSGSAVSTAPATAGNFLVNPLEPKNAEKLKVKIADLGNACWVHK----------HFTED 253 (397)
T ss_dssp HHHHHHHHHHHC---------------------CCTTSCCTTSGGGGGGCCEEECCGGGCEETTB----------CSCSC
T ss_pred chhhhhhhhhhHHHhhcCCCCCCCCccccCCcccccccccccccccccccceEeccccccccccc----------cCccC
Confidence 5 799999999986521 12234
Q ss_pred cccccccCCCccCC-CCCcccchhhHHHHHHHHHhCCCCCCCCCCCchhhhH-----H--HHhcCChhhh-------hhc
Q 005045 568 KGSIGYIPPEHMNG-QVSILGDIYSYGILLLEMFTGKRPTGDMFKDDFSIHM-----F--VSMALPDHVM-------DIL 632 (717)
Q Consensus 568 ~~~~~y~aPE~~~~-~~~~~sDvwslG~vl~elltg~~p~~~~~~~~~~~~~-----~--~~~~~~~~~~-------~~~ 632 (717)
.||+.|+|||++.+ .++.++|||||||++|+|++|..||............ . .....+..+. .++
T Consensus 254 ~gt~~y~aPE~~~~~~~~~~~DiwslG~il~elltg~~pf~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~ 333 (397)
T 1wak_A 254 IQTRQYRSLEVLIGSGYNTPADIWSTACMAFELATGDYLFEPHSGEEYTRDEDHIALIIELLGKVPRKLIVAGKYSKEFF 333 (397)
T ss_dssp CSCGGGCCHHHHHTSCCCTHHHHHHHHHHHHHHHHSSCSCCCCCCSSSCHHHHHHHHHHHHHCSCCHHHHHHCTTGGGTB
T ss_pred CCCCcccCChhhcCCCCCcHHHHHHHHHHHHHHhhCCCCCCCCcccccCchHHHHHHHHHhcCCCChHHhhccccccccc
Confidence 68999999999655 4899999999999999999999999875543321110 0 0111111110 011
Q ss_pred CCCCC--CCCCCcHHHHHHHHHHHHHHhhhhhhhcchhhhHHHHHHHHHHhhccCCCCcCCCCCHHHHHH
Q 005045 633 DPSMP--LDEENDEEQIEEVIEEKEMMIHIDLEVNTKNKLEECFVSVLRIGLMCSTTSPRERIAMNVVVN 700 (717)
Q Consensus 633 ~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~cl~~~p~~Rps~~eil~ 700 (717)
...-. ...........+.+.+ ....+.+++..+.+|+.+||+.+|++|||++|+++
T Consensus 334 ~~~~~~~~~~~~~~~~~~~~~~~------------~~~~~~~~~~~~~~li~~~L~~dP~~Rpt~~e~l~ 391 (397)
T 1wak_A 334 TKKGDLKHITKLKPWGLFEVLVE------------KYEWSQEEAAGFTDFLLPMLELIPEKRATAAECLR 391 (397)
T ss_dssp CTTSSBSSCCCCCCCCHHHHHHH------------TSCCCHHHHHHHHHHHGGGGCSSGGGSCCHHHHHT
T ss_pred CCccccccccccCCcchhHhhhh------------hcccchhhHHHHHHHHHHHhccChhhcCCHHHHhh
Confidence 10000 0000000000111100 11233556788999999999999999999999986
No 268
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=100.00 E-value=4.4e-35 Score=318.77 Aligned_cols=312 Identities=17% Similarity=0.192 Sum_probs=266.6
Q ss_pred CCcCcCCCCcCCcCCCCCCEEECCCCcccccCCcCCCCCCCCCEEEccCccccccCCccccCCCCCCEEeccCCcCcccC
Q 005045 19 YNYLSGKIPTNLSHCTELRSFEASVNDFVGQIPNQLSSLTKLEIIGLGGSNLTGNVPAWIGNFSSLKALSLAWNNLRGSI 98 (717)
Q Consensus 19 ~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~ 98 (717)
.+...+..+..++.+++|++|++++|.+++ +| .|..+++|++|+|++|.+++ +| ++.+++|++|+|++|++++.
T Consensus 27 ~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~-~~-~l~~l~~L~~L~Ls~n~l~~-~~--~~~l~~L~~L~Ls~N~l~~~- 100 (457)
T 3bz5_A 27 AFEMQATDTISEEQLATLTSLDCHNSSITD-MT-GIEKLTGLTKLICTSNNITT-LD--LSQNTNLTYLACDSNKLTNL- 100 (457)
T ss_dssp HTTCCTTSEEEHHHHTTCCEEECCSSCCCC-CT-TGGGCTTCSEEECCSSCCSC-CC--CTTCTTCSEEECCSSCCSCC-
T ss_pred hcCcCcccccChhHcCCCCEEEccCCCccc-Ch-hhcccCCCCEEEccCCcCCe-Ec--cccCCCCCEEECcCCCCcee-
Confidence 344555666788999999999999999995 46 69999999999999999995 45 89999999999999999964
Q ss_pred ChhhhccCCCCeEeccCCCCCCCCCccccCCCCccEEEcccCcccccCCcccccCCCCcceeecccccccccCCccCCCC
Q 005045 99 PNELGQLSGLGFFTLYGNFISGIIPSSIYNISSIYYFSVTQNQLHGQLPTDVGLTLPNLKIFAGAVNYFTGSIPVSLSNA 178 (717)
Q Consensus 99 ~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~~l~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l 178 (717)
+ |.++++|++|+|++|+++++ + +..+++|++|++++|+++ .++ +..+++|+.|++++|...+.+ .+..+
T Consensus 101 ~--~~~l~~L~~L~L~~N~l~~l-~--~~~l~~L~~L~l~~N~l~-~l~---l~~l~~L~~L~l~~n~~~~~~--~~~~l 169 (457)
T 3bz5_A 101 D--VTPLTKLTYLNCDTNKLTKL-D--VSQNPLLTYLNCARNTLT-EID---VSHNTQLTELDCHLNKKITKL--DVTPQ 169 (457)
T ss_dssp C--CTTCTTCCEEECCSSCCSCC-C--CTTCTTCCEEECTTSCCS-CCC---CTTCTTCCEEECTTCSCCCCC--CCTTC
T ss_pred e--cCCCCcCCEEECCCCcCCee-c--CCCCCcCCEEECCCCccc-eec---cccCCcCCEEECCCCCccccc--ccccC
Confidence 4 89999999999999999974 3 899999999999999998 454 458999999999999655444 58899
Q ss_pred CCCCEEeccCccccccCCCCccCCCCCCeeeccccccCCcccCchhhhhhhccCCCCCEEEeecCcccCcCchhhhhccc
Q 005045 179 SNLQVLDFAENGLTGTIPGNFGSLKDLVRLNFDQNELGSREIGDLNFLKFLANCTSLEVLGLARNSFGGEMPISIANLST 258 (717)
Q Consensus 179 ~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~~~ 258 (717)
++|++|++++|++++ +| +..+++|+.|++++|.++.++ +..+++|+.|++++|++++ +| +..+ +
T Consensus 170 ~~L~~L~ls~n~l~~-l~--l~~l~~L~~L~l~~N~l~~~~---------l~~l~~L~~L~Ls~N~l~~-ip--~~~l-~ 233 (457)
T 3bz5_A 170 TQLTTLDCSFNKITE-LD--VSQNKLLNRLNCDTNNITKLD---------LNQNIQLTFLDCSSNKLTE-ID--VTPL-T 233 (457)
T ss_dssp TTCCEEECCSSCCCC-CC--CTTCTTCCEEECCSSCCSCCC---------CTTCTTCSEEECCSSCCSC-CC--CTTC-T
T ss_pred CcCCEEECCCCccce-ec--cccCCCCCEEECcCCcCCeec---------cccCCCCCEEECcCCcccc-cC--cccc-C
Confidence 999999999999995 45 889999999999999999864 6788999999999999995 67 5566 5
Q ss_pred cccEEecCCCccCCCCCccccCCC-------CCCEEEccCCcCccccchhhhcCCCCCeEEcccCcCCCCCCc-------
Q 005045 259 HLRRLTMGENLMHGNIPVGIGNLV-------NLNLLGLEGNNLSGSVPEVIGRLNKLEGLGLNVNKFSGLIPS------- 324 (717)
Q Consensus 259 ~L~~L~l~~N~l~~~~~~~~~~l~-------~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~------- 324 (717)
+|+.|++++|.+++..+..+.++. +|+.|++++|.+.+.+| ++.+++|+.|++++|...+.+|.
T Consensus 234 ~L~~L~l~~N~l~~~~~~~l~~L~~L~l~~n~L~~L~l~~n~~~~~~~--~~~l~~L~~L~Ls~n~~l~~l~~~~~~L~~ 311 (457)
T 3bz5_A 234 QLTYFDCSVNPLTELDVSTLSKLTTLHCIQTDLLEIDLTHNTQLIYFQ--AEGCRKIKELDVTHNTQLYLLDCQAAGITE 311 (457)
T ss_dssp TCSEEECCSSCCSCCCCTTCTTCCEEECTTCCCSCCCCTTCTTCCEEE--CTTCTTCCCCCCTTCTTCCEEECTTCCCSC
T ss_pred CCCEEEeeCCcCCCcCHHHCCCCCEEeccCCCCCEEECCCCccCCccc--ccccccCCEEECCCCcccceeccCCCcceE
Confidence 999999999999987666666655 56777777777766666 56789999999999986554442
Q ss_pred -ccccccccceeecccccccccCCcCccCcCCCceEEeecccCCC
Q 005045 325 -SLGNLTILTRLWMEENRLEGSIPPSLGNCQKLLVLNLSSNDLNG 368 (717)
Q Consensus 325 -~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~ 368 (717)
.+.++++|+.|+|++|++++ ++ +..+++|+.|++++|.|++
T Consensus 312 L~l~~~~~L~~L~L~~N~l~~-l~--l~~l~~L~~L~l~~N~l~~ 353 (457)
T 3bz5_A 312 LDLSQNPKLVYLYLNNTELTE-LD--VSHNTKLKSLSCVNAHIQD 353 (457)
T ss_dssp CCCTTCTTCCEEECTTCCCSC-CC--CTTCTTCSEEECCSSCCCB
T ss_pred echhhcccCCEEECCCCcccc-cc--cccCCcCcEEECCCCCCCC
Confidence 35677899999999999996 43 8999999999999999986
No 269
>1blx_A Cyclin-dependent kinase 6; inhibitor protein, cyclin-dependent kinase, cell cycle control, alpha/beta, complex (inhibitor protein/kinase); 1.90A {Homo sapiens} SCOP: d.144.1.7 PDB: 1bi7_A 1bi8_A 1g3n_A 2f2c_B* 1jow_B* 2euf_B* 1xo2_B* 3nup_A* 3nux_A* 2w9z_B 2w99_B 2w96_B 2w9f_B
Probab=100.00 E-value=1.5e-36 Score=317.30 Aligned_cols=280 Identities=23% Similarity=0.369 Sum_probs=200.6
Q ss_pred cccccccccccccccCcccccceEEEEe--CCCchhhhHHhHhhh--hhHHHHHHHHHHHHhcC---CCCceeEEEEeec
Q 005045 383 DISKSTDNFSKENLIGTGSFGSVYKGTL--GDGTIVAIKVLKLQQ--QGALKSFIDECNALKST---RHRNILRVITACS 455 (717)
Q Consensus 383 ~~~~~~~~y~~~~~ig~g~~g~v~~~~~--~~~~~vavK~~~~~~--~~~~~~~~~e~~~l~~l---~h~ni~~~~~~~~ 455 (717)
.+....++|++.+.||+|+||.||+|.+ .+|+.||+|++.... ......+.+|+.+++.+ .||||+++++++.
T Consensus 5 ~~~~~~~~y~~~~~lg~G~~g~V~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~e~~~l~~l~~~~h~~i~~~~~~~~ 84 (326)
T 1blx_A 5 GLCRADQQYECVAEIGEGAYGKVFKARDLKNGGRFVALKRVRVQTGEEGMPLSTIREVAVLRHLETFEHPNVVRLFDVCT 84 (326)
T ss_dssp CCCCGGGTEEEEEEEEEETTEEEEEEEETTTTTEEEEEEEEEEEBCTTSCBCTHHHHHHHHHHHHHTCCTTBCCEEEEEE
T ss_pred cccCchhceeeeeeecccccEEEEEEEecCCCCEEEEEEEeccCcccccCCchhhHHHHHHHhhhccCCCCeEeeeeeee
Confidence 3456678999999999999999999997 368899999986432 11223455677766655 8999999999875
Q ss_pred cccCCCCceEEEEEecCCCCChhhhccCCCCCcccccccCHHHHHHHHHHHHHHHHHHHhcCCCCeeecCCCCCCEEeCC
Q 005045 456 SVDLEGNDFKALVFEFMSNGNLDQWLHPSPAEHYQFKKLSVIQRLNIAIDVASALDYLHHHCDTPIAHCDLKPSNVLLDK 535 (717)
Q Consensus 456 ~~~~~~~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~dlkp~NIll~~ 535 (717)
..........++||||++ ++|.+++..... ..+++..+..++.||+.||+|||+. |++||||||+||+++.
T Consensus 85 ~~~~~~~~~~~lv~e~~~-~~L~~~l~~~~~-----~~~~~~~~~~~~~qi~~~l~~lH~~---gi~H~dlkp~Nili~~ 155 (326)
T 1blx_A 85 VSRTDRETKLTLVFEHVD-QDLTTYLDKVPE-----PGVPTETIKDMMFQLLRGLDFLHSH---RVVHRDLKPQNILVTS 155 (326)
T ss_dssp EEECSSEEEEEEEEECCS-CBHHHHHHHSCT-----TCSCHHHHHHHHHHHHHHHHHHHHT---TCCCCCCCGGGEEECT
T ss_pred ecccCCCceEEEEEecCC-CCHHHHHHhccc-----CCCCHHHHHHHHHHHHHHHHHHHHC---CceeccCCHHHeEEcC
Confidence 433345568999999997 699999875421 4589999999999999999999998 9999999999999999
Q ss_pred CCceEEeeeccchhcccccCCCCCCcceeecccccccccCCCccCC-CCCcccchhhHHHHHHHHHhCCCCCCCCCCCch
Q 005045 536 DMTAHVGDFGLAKFLFEISDNPSKNQTVSIGLKGSIGYIPPEHMNG-QVSILGDIYSYGILLLEMFTGKRPTGDMFKDDF 614 (717)
Q Consensus 536 ~~~~kl~Dfg~~~~~~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~-~~~~~sDvwslG~vl~elltg~~p~~~~~~~~~ 614 (717)
++.+||+|||.+..... ........++..|+|||++.+ .++.++|||||||++|+|++|..||........
T Consensus 156 ~~~~kl~Dfg~~~~~~~--------~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~g~~pf~~~~~~~~ 227 (326)
T 1blx_A 156 SGQIKLADFGLARIYSF--------QMALTSVVVTLWYRAPEVLLQSSYATPVDLWSVGCIFAEMFRRKPLFRGSSDVDQ 227 (326)
T ss_dssp TCCEEECSCCSCCCCCG--------GGGGCCCCCCCTTCCHHHHTTCCCCTHHHHHHHHHHHHHHHHSSCSCCCSSHHHH
T ss_pred CCCEEEecCcccccccC--------CCCccccccccceeCHHHHhcCCCCcchhHHHHHHHHHHHHcCCCCCCCCCHHHH
Confidence 99999999999876421 112234568999999999654 589999999999999999999999976532211
Q ss_pred hhhHHHH-hcCCh--hhhhhcC-CCCCCCCCCcHHHHHHHHHHHHHHhhhhhhhcchhhhHHHHHHHHHHhhccCCCCcC
Q 005045 615 SIHMFVS-MALPD--HVMDILD-PSMPLDEENDEEQIEEVIEEKEMMIHIDLEVNTKNKLEECFVSVLRIGLMCSTTSPR 690 (717)
Q Consensus 615 ~~~~~~~-~~~~~--~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~cl~~~p~ 690 (717)
...... ...+. .+..... +...... ...........+++..+.+++.+||+.+|+
T Consensus 228 -~~~i~~~~~~~~~~~~~~~~~~~~~~~~~--------------------~~~~~~~~~~~~~~~~~~~li~~~L~~dP~ 286 (326)
T 1blx_A 228 -LGKILDVIGLPGEEDWPRDVALPRQAFHS--------------------KSAQPIEKFVTDIDELGKDLLLKCLTFNPA 286 (326)
T ss_dssp -HHHHHHHHCCCCGGGSCTTCSSCGGGSCC--------------------CCCCCGGGTCCSCCHHHHHHHHHHSCSSTT
T ss_pred -HHHHHHHcCCCCcccCccccccchhhhcc--------------------cCcchhhhccccCCHHHHHHHHHHcCCCcc
Confidence 111111 01110 0000000 0000000 000000001122356678999999999999
Q ss_pred CCCCHHHHHH
Q 005045 691 ERIAMNVVVN 700 (717)
Q Consensus 691 ~Rps~~eil~ 700 (717)
+|||+.|+++
T Consensus 287 ~Rpt~~e~l~ 296 (326)
T 1blx_A 287 KRISAYSALS 296 (326)
T ss_dssp TSCCHHHHHT
T ss_pred cCCCHHHHhc
Confidence 9999999985
No 270
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=100.00 E-value=2.3e-35 Score=320.62 Aligned_cols=320 Identities=23% Similarity=0.300 Sum_probs=174.7
Q ss_pred eecEEEcCCCcCcCCCCcCCcCCCCCCEEECCCCcccccCCcCCCCCCCC-------------CEEEccCccccccCCcc
Q 005045 11 MTQDLNLTYNYLSGKIPTNLSHCTELRSFEASVNDFVGQIPNQLSSLTKL-------------EIIGLGGSNLTGNVPAW 77 (717)
Q Consensus 11 ~~~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L-------------~~L~L~~n~l~~~~p~~ 77 (717)
.+++|++++|++ +.+|.+|+++++|++|++++|.+++.+|..++++++| ++|++++|.++ .+|..
T Consensus 12 ~L~~L~l~~n~l-~~iP~~i~~L~~L~~L~l~~n~~~~~~p~~~~~l~~L~~l~l~~c~~~~l~~L~l~~~~l~-~lp~~ 89 (454)
T 1jl5_A 12 FLQEPLRHSSNL-TEMPVEAENVKSKTEYYNAWSEWERNAPPGNGEQREMAVSRLRDCLDRQAHELELNNLGLS-SLPEL 89 (454)
T ss_dssp -----------------------CCHHHHHHHHHHHHHTSCTTSCCCHHHHHHHHHHHHHHTCSEEECTTSCCS-CCCSC
T ss_pred cchhhhcccCch-hhCChhHhcccchhhhhccCCcccccCCcccccchhcchhhhhhhhccCCCEEEecCCccc-cCCCC
Confidence 678888888888 5788888888888888888888888888888777654 66666666666 33432
Q ss_pred ccCCCCCCEEeccCCcCcccCChhhh----------------cc-CCCCeEeccCCCCCCCCCccccCCCCccEEEcccC
Q 005045 78 IGNFSSLKALSLAWNNLRGSIPNELG----------------QL-SGLGFFTLYGNFISGIIPSSIYNISSIYYFSVTQN 140 (717)
Q Consensus 78 ~~~l~~L~~L~L~~n~l~~~~~~~~~----------------~l-~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N 140 (717)
.++|++|++++|++++ +|..+. .+ ++|++|+|++|++++ +| .|.++++|++|++++|
T Consensus 90 ---~~~L~~L~l~~n~l~~-lp~~~~~L~~L~l~~n~l~~l~~~~~~L~~L~L~~n~l~~-lp-~~~~l~~L~~L~l~~N 163 (454)
T 1jl5_A 90 ---PPHLESLVASCNSLTE-LPELPQSLKSLLVDNNNLKALSDLPPLLEYLGVSNNQLEK-LP-ELQNSSFLKIIDVDNN 163 (454)
T ss_dssp ---CTTCSEEECCSSCCSS-CCCCCTTCCEEECCSSCCSCCCSCCTTCCEEECCSSCCSS-CC-CCTTCTTCCEEECCSS
T ss_pred ---cCCCCEEEccCCcCCc-cccccCCCcEEECCCCccCcccCCCCCCCEEECcCCCCCC-Cc-ccCCCCCCCEEECCCC
Confidence 1455555555555553 332210 11 466666666666664 44 4666777777777777
Q ss_pred cccccCCcccccCCCCcceeecccccccccCCccCCCCCCCCEEeccCccccccCCCCccCCCCCCeeeccccccCCccc
Q 005045 141 QLHGQLPTDVGLTLPNLKIFAGAVNYFTGSIPVSLSNASNLQVLDFAENGLTGTIPGNFGSLKDLVRLNFDQNELGSREI 220 (717)
Q Consensus 141 ~l~~~l~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~ 220 (717)
+++ .+|.. .++|++|++++|.+++ +| .+.++++|++|++++|.+++ +|... ++|+.|++++|.++.++
T Consensus 164 ~l~-~lp~~----~~~L~~L~L~~n~l~~-l~-~~~~l~~L~~L~l~~N~l~~-l~~~~---~~L~~L~l~~n~l~~lp- 231 (454)
T 1jl5_A 164 SLK-KLPDL----PPSLEFIAAGNNQLEE-LP-ELQNLPFLTAIYADNNSLKK-LPDLP---LSLESIVAGNNILEELP- 231 (454)
T ss_dssp CCS-CCCCC----CTTCCEEECCSSCCSS-CC-CCTTCTTCCEEECCSSCCSS-CCCCC---TTCCEEECCSSCCSSCC-
T ss_pred cCc-ccCCC----cccccEEECcCCcCCc-Cc-cccCCCCCCEEECCCCcCCc-CCCCc---CcccEEECcCCcCCccc-
Confidence 766 45532 3466777777776665 34 46667777777777776663 33322 46666666666666442
Q ss_pred CchhhhhhhccCCCCCEEEeecCcccCcCchhhhhccccccEEecCCCccCCCCCccccCCCCCCEEEccCCcCccc--c
Q 005045 221 GDLNFLKFLANCTSLEVLGLARNSFGGEMPISIANLSTHLRRLTMGENLMHGNIPVGIGNLVNLNLLGLEGNNLSGS--V 298 (717)
Q Consensus 221 ~~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~~~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~--~ 298 (717)
.+..+++|++|++++|+++ .+|.. +++|+.|++++|.+++ +|.. +++|+.|++++|++++. .
T Consensus 232 -------~~~~l~~L~~L~l~~N~l~-~l~~~----~~~L~~L~l~~N~l~~-l~~~---~~~L~~L~ls~N~l~~l~~~ 295 (454)
T 1jl5_A 232 -------ELQNLPFLTTIYADNNLLK-TLPDL----PPSLEALNVRDNYLTD-LPEL---PQSLTFLDVSENIFSGLSEL 295 (454)
T ss_dssp -------CCTTCTTCCEEECCSSCCS-SCCSC----CTTCCEEECCSSCCSC-CCCC---CTTCCEEECCSSCCSEESCC
T ss_pred -------ccCCCCCCCEEECCCCcCC-ccccc----ccccCEEECCCCcccc-cCcc---cCcCCEEECcCCccCcccCc
Confidence 2566777777777777777 34432 2467777777777664 3332 25666666666666641 1
Q ss_pred chhh-------------hcC-CCCCeEEcccCcCCCCCCcccccccccceeecccccccccCCcCccCcCCCceEEeecc
Q 005045 299 PEVI-------------GRL-NKLEGLGLNVNKFSGLIPSSLGNLTILTRLWMEENRLEGSIPPSLGNCQKLLVLNLSSN 364 (717)
Q Consensus 299 ~~~~-------------~~l-~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~l~~N 364 (717)
|..+ ..+ ++|++|++++|+++++ |.. +++|+.|++++|+++ .+|. .+++|+.|++++|
T Consensus 296 ~~~L~~L~l~~N~l~~i~~~~~~L~~L~Ls~N~l~~l-p~~---~~~L~~L~L~~N~l~-~lp~---~l~~L~~L~L~~N 367 (454)
T 1jl5_A 296 PPNLYYLNASSNEIRSLCDLPPSLEELNVSNNKLIEL-PAL---PPRLERLIASFNHLA-EVPE---LPQNLKQLHVEYN 367 (454)
T ss_dssp CTTCCEEECCSSCCSEECCCCTTCCEEECCSSCCSCC-CCC---CTTCCEEECCSSCCS-CCCC---CCTTCCEEECCSS
T ss_pred CCcCCEEECcCCcCCcccCCcCcCCEEECCCCccccc-ccc---CCcCCEEECCCCccc-cccc---hhhhccEEECCCC
Confidence 1111 111 3555566666655542 222 355666666666665 3444 3456666666666
Q ss_pred cCCC--CCCccc
Q 005045 365 DLNG--TIPKEV 374 (717)
Q Consensus 365 ~l~~--~~p~~~ 374 (717)
++++ .+|.++
T Consensus 368 ~l~~l~~ip~~l 379 (454)
T 1jl5_A 368 PLREFPDIPESV 379 (454)
T ss_dssp CCSSCCCCCTTC
T ss_pred CCCcCCCChHHH
Confidence 6665 444443
No 271
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=100.00 E-value=8.1e-35 Score=304.55 Aligned_cols=288 Identities=22% Similarity=0.290 Sum_probs=180.9
Q ss_pred CCCEEECCCCcccccCCcCCCCCCCCCEEEccCccccccCCccccCCCCCCEEeccCCcCcccCChhhhccCCCCeEecc
Q 005045 35 ELRSFEASVNDFVGQIPNQLSSLTKLEIIGLGGSNLTGNVPAWIGNFSSLKALSLAWNNLRGSIPNELGQLSGLGFFTLY 114 (717)
Q Consensus 35 ~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~ 114 (717)
+++.+++++|.++ .+|..+. ++|++|+|++|.+++..|..|.++++|++|+|++|+|++..|..|.++++|++|+|+
T Consensus 34 ~l~~l~~~~~~l~-~ip~~~~--~~l~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~ 110 (332)
T 2ft3_A 34 HLRVVQCSDLGLK-AVPKEIS--PDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYIS 110 (332)
T ss_dssp ETTEEECCSSCCS-SCCSCCC--TTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGSTTCTTCCEEECC
T ss_pred cCCEEECCCCCcc-ccCCCCC--CCCeEEECCCCcCCccCHhHhhCCCCCcEEECCCCccCccCHhHhhCcCCCCEEECC
Confidence 4666666666655 4554442 456666666666665555556666666666666666665555566666666666666
Q ss_pred CCCCCCCCCccccCCCCccEEEcccCcccccCCcccccCCCCcceeeccccccc--ccCCccCCCCCCCCEEeccCcccc
Q 005045 115 GNFISGIIPSSIYNISSIYYFSVTQNQLHGQLPTDVGLTLPNLKIFAGAVNYFT--GSIPVSLSNASNLQVLDFAENGLT 192 (717)
Q Consensus 115 ~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~~l~~~~~~~l~~L~~L~l~~n~l~--~~~~~~~~~l~~L~~L~l~~N~l~ 192 (717)
+|.++. +|..+. ++|++|++++|.++ .++...+..+++|+.|++++|.++ +..+..+..+ +|++|++++|+++
T Consensus 111 ~n~l~~-l~~~~~--~~L~~L~l~~n~i~-~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l-~L~~L~l~~n~l~ 185 (332)
T 2ft3_A 111 KNHLVE-IPPNLP--SSLVELRIHDNRIR-KVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGL-KLNYLRISEAKLT 185 (332)
T ss_dssp SSCCCS-CCSSCC--TTCCEEECCSSCCC-CCCSGGGSSCSSCCEEECCSCCCBGGGSCTTSSCSC-CCSCCBCCSSBCS
T ss_pred CCcCCc-cCcccc--ccCCEEECCCCccC-ccCHhHhCCCccCCEEECCCCccccCCCCcccccCC-ccCEEECcCCCCC
Confidence 666653 333332 55666666666665 555555556666666666666664 2455566666 6777777777776
Q ss_pred ccCCCCccCCCCCCeeeccccccCCcccCchhhhhhhccCCCCCEEEeecCcccCcCchhhhhccccccEEecCCCccCC
Q 005045 193 GTIPGNFGSLKDLVRLNFDQNELGSREIGDLNFLKFLANCTSLEVLGLARNSFGGEMPISIANLSTHLRRLTMGENLMHG 272 (717)
Q Consensus 193 ~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~~~~L~~L~l~~N~l~~ 272 (717)
+ +|..+. ++|+.|++++|.++.+. +..+.++++|+.|+|++|.+++..+..+..+ ++|++|++++|.++
T Consensus 186 ~-l~~~~~--~~L~~L~l~~n~i~~~~------~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~l-~~L~~L~L~~N~l~- 254 (332)
T 2ft3_A 186 G-IPKDLP--ETLNELHLDHNKIQAIE------LEDLLRYSKLYRLGLGHNQIRMIENGSLSFL-PTLRELHLDNNKLS- 254 (332)
T ss_dssp S-CCSSSC--SSCSCCBCCSSCCCCCC------TTSSTTCTTCSCCBCCSSCCCCCCTTGGGGC-TTCCEEECCSSCCC-
T ss_pred c-cCcccc--CCCCEEECCCCcCCccC------HHHhcCCCCCCEEECCCCcCCcCChhHhhCC-CCCCEEECCCCcCe-
Confidence 3 444333 56777777777776665 4556667777777777777775555555555 47777777777776
Q ss_pred CCCccccCCCCCCEEEccCCcCccccchhhhc------CCCCCeEEcccCcCC--CCCCcccccccccceeeccccc
Q 005045 273 NIPVGIGNLVNLNLLGLEGNNLSGSVPEVIGR------LNKLEGLGLNVNKFS--GLIPSSLGNLTILTRLWMEENR 341 (717)
Q Consensus 273 ~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~------l~~L~~L~Ls~N~l~--~~~~~~~~~l~~L~~L~L~~N~ 341 (717)
.+|..+..+++|+.|++++|++++..+..|.. ...|+.|++++|++. ++.|..|..+++|+.|+|++|+
T Consensus 255 ~lp~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~l~~L~l~~N~~~~~~~~~~~~~~l~~L~~l~l~~n~ 331 (332)
T 2ft3_A 255 RVPAGLPDLKLLQVVYLHTNNITKVGVNDFCPVGFGVKRAYYNGISLFNNPVPYWEVQPATFRCVTDRLAIQFGNYK 331 (332)
T ss_dssp BCCTTGGGCTTCCEEECCSSCCCBCCTTSSSCSSCCSSSCCBSEEECCSSSSCGGGSCGGGGTTBCCSTTEEC----
T ss_pred ecChhhhcCccCCEEECCCCCCCccChhHccccccccccccccceEeecCcccccccCcccccccchhhhhhccccc
Confidence 56666777777777777777777655555554 356778888888877 6677778888888888888775
No 272
>3e3p_A Protein kinase, putative glycogen synthase kinase; leishmaniasis, transferase; 2.00A {Leishmania major}
Probab=100.00 E-value=2.4e-36 Score=320.22 Aligned_cols=285 Identities=22% Similarity=0.231 Sum_probs=188.2
Q ss_pred ccccccccccccccCcccccceEEEEeC-CCchhhhHHhHhhhhhHHHHHHHHHHHHhcCCCCceeEEEEeeccccC--C
Q 005045 384 ISKSTDNFSKENLIGTGSFGSVYKGTLG-DGTIVAIKVLKLQQQGALKSFIDECNALKSTRHRNILRVITACSSVDL--E 460 (717)
Q Consensus 384 ~~~~~~~y~~~~~ig~g~~g~v~~~~~~-~~~~vavK~~~~~~~~~~~~~~~e~~~l~~l~h~ni~~~~~~~~~~~~--~ 460 (717)
.....++|++.+.||+|+||.||+|++. +|+.||+|++.... .......++++.++.++||||+++++++..... .
T Consensus 18 ~~~~~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~-~~~~~~~~~~~~l~~l~h~niv~~~~~~~~~~~~~~ 96 (360)
T 3e3p_A 18 SRKEMDRFQVERMAGQGTFGTVQLGKEKSTGMSVAIKKVIQDP-RFRNRELQIMQDLAVLHHPNIVQLQSYFYTLGERDR 96 (360)
T ss_dssp HHHHHTTEEEC----------CEEEEETTTCCEEEEEEEECCT-TCCCHHHHHHHHHHHHCCTTBCCEEEEEEEECSSCT
T ss_pred chhhccceEEEEEEecCCCeEEEEEEECCCCCEEEEEEEecCc-cccHHHHHHHHHHHhcCCCCcccHHHhhhccccccc
Confidence 4456789999999999999999999975 78999999875432 233566778888899999999999998755332 2
Q ss_pred CCceEEEEEecCCCCChhhhccCCCCCcccccccCHHHHHHHHHHHHHHHHHHH--hcCCCCeeecCCCCCCEEeCC-CC
Q 005045 461 GNDFKALVFEFMSNGNLDQWLHPSPAEHYQFKKLSVIQRLNIAIDVASALDYLH--HHCDTPIAHCDLKPSNVLLDK-DM 537 (717)
Q Consensus 461 ~~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~i~~~i~~~l~~LH--~~~~~~ivH~dlkp~NIll~~-~~ 537 (717)
.....++||||+++ ++.+.+..... ....+++..+..++.|++.|+.||| +. +|+||||||+||+++. ++
T Consensus 97 ~~~~~~lv~e~~~~-~l~~~~~~~~~---~~~~~~~~~~~~~~~qi~~al~~lH~~~~---~ivH~Dlkp~NIll~~~~~ 169 (360)
T 3e3p_A 97 RDIYLNVVMEYVPD-TLHRCCRNYYR---RQVAPPPILIKVFLFQLIRSIGCLHLPSV---NVCHRDIKPHNVLVNEADG 169 (360)
T ss_dssp TCEEEEEEEECCSC-BHHHHHHHHHT---TTCCCCHHHHHHHHHHHHHHHHHHTSTTT---CCBCSCCCGGGEEEETTTT
T ss_pred cceeEEEEeecccc-cHHHHHHHHhh---cccCCCHHHHHHHHHHHHHHHHHHhCCCC---CeecCcCCHHHEEEeCCCC
Confidence 23347899999975 55444321000 1156889999999999999999999 76 9999999999999996 89
Q ss_pred ceEEeeeccchhcccccCCCCCCcceeecccccccccCCCccCC-C-CCcccchhhHHHHHHHHHhCCCCCCCCCCCchh
Q 005045 538 TAHVGDFGLAKFLFEISDNPSKNQTVSIGLKGSIGYIPPEHMNG-Q-VSILGDIYSYGILLLEMFTGKRPTGDMFKDDFS 615 (717)
Q Consensus 538 ~~kl~Dfg~~~~~~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~-~-~~~~sDvwslG~vl~elltg~~p~~~~~~~~~~ 615 (717)
.+||+|||.+...... .......||+.|+|||++.+ . ++.++|||||||++|+|++|..||........
T Consensus 170 ~~kl~Dfg~a~~~~~~--------~~~~~~~gt~~y~aPE~~~~~~~~~~~~Di~slG~il~ell~g~~pf~~~~~~~~- 240 (360)
T 3e3p_A 170 TLKLCDFGSAKKLSPS--------EPNVAYICSRYYRAPELIFGNQHYTTAVDIWSVGCIFAEMMLGEPIFRGDNSAGQ- 240 (360)
T ss_dssp EEEECCCTTCBCCCTT--------SCCCSTTSCGGGCCHHHHTTCSSCCTHHHHHHHHHHHHHHHHSSCSSCCSSHHHH-
T ss_pred cEEEeeCCCceecCCC--------CCcccccCCcceeCHHHHcCCCCCCcHHHHHHHHHHHHHHHhCCCCcCCCChHHH-
Confidence 9999999999865211 11233568999999999644 3 79999999999999999999999976432211
Q ss_pred hhHHHHh--cCChhhhhhcCCCCCCCCCC--cHHHHHHHHHHHHHHhhhhhhhcchhhhHHHHHHHHHHhhccCCCCcCC
Q 005045 616 IHMFVSM--ALPDHVMDILDPSMPLDEEN--DEEQIEEVIEEKEMMIHIDLEVNTKNKLEECFVSVLRIGLMCSTTSPRE 691 (717)
Q Consensus 616 ~~~~~~~--~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~cl~~~p~~ 691 (717)
....... ..+......+++........ ....... . -.....+++..+.+++.+||+.||++
T Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------------~--~~~~~~~~~~~~~~li~~~L~~dP~~ 305 (360)
T 3e3p_A 241 LHEIVRVLGCPSREVLRKLNPSHTDVDLYNSKGIPWSN-------------V--FSDHSLKDAKEAYDLLSALLQYLPEE 305 (360)
T ss_dssp HHHHHHHHCCCCHHHHHHHCTTCCCGGGGCCCCCCHHH-------------H--TTTCCCTTHHHHHHHHHHHTCSSGGG
T ss_pred HHHHHHHcCCCCHHHHHhcccchhhccccccccCCccc-------------c--cchhhccccHHHHHHHHHHhccCccc
Confidence 1111111 11111212222111100000 0000000 0 00011123667899999999999999
Q ss_pred CCCHHHHHH
Q 005045 692 RIAMNVVVN 700 (717)
Q Consensus 692 Rps~~eil~ 700 (717)
|||+.|+++
T Consensus 306 Rpt~~e~l~ 314 (360)
T 3e3p_A 306 RMKPYEALC 314 (360)
T ss_dssp SCCHHHHTT
T ss_pred cCCHHHHhc
Confidence 999999986
No 273
>3rgf_A Cyclin-dependent kinase 8; protein kinase complex, transferase,transcription; HET: BAX; 2.20A {Homo sapiens}
Probab=100.00 E-value=8.4e-37 Score=328.67 Aligned_cols=211 Identities=21% Similarity=0.268 Sum_probs=155.3
Q ss_pred ccccccc-ccccCcccccceEEEEeC---CCchhhhHHhHhhhhhHHHHHHHHHHHHhcCCCCceeEEEEeeccccCCCC
Q 005045 387 STDNFSK-ENLIGTGSFGSVYKGTLG---DGTIVAIKVLKLQQQGALKSFIDECNALKSTRHRNILRVITACSSVDLEGN 462 (717)
Q Consensus 387 ~~~~y~~-~~~ig~g~~g~v~~~~~~---~~~~vavK~~~~~~~~~~~~~~~e~~~l~~l~h~ni~~~~~~~~~~~~~~~ 462 (717)
..+.|++ .++||+|+||.||+|+++ +++.||+|++.... ....+.+|++++++++||||+++++++.. ...
T Consensus 18 ~~~~y~~~g~~lG~G~~g~Vy~~~~~~~~~~~~vaiK~~~~~~--~~~~~~~E~~~l~~l~hpniv~~~~~~~~---~~~ 92 (405)
T 3rgf_A 18 VEDLFEYEGCKVGRGTYGHVYKAKRKDGKDDKDYALKQIEGTG--ISMSACREIALLRELKHPNVISLQKVFLS---HAD 92 (405)
T ss_dssp HHHHEECSSCCCC-----EEEEEEESSSSCCCCEEEEECSSSS--CCHHHHHHHHHHHHCCCTTBCCCCEEEEE---TTT
T ss_pred hhhhhhhcCcEeeecCCeEEEEEEEccCCCCeEEEEEEECCCC--CCHHHHHHHHHHHhcCCCCeeeEeeEEec---CCC
Confidence 3456776 458999999999999954 68899999986443 23567889999999999999999998642 345
Q ss_pred ceEEEEEecCCCCChhhhccCCCCC--cccccccCHHHHHHHHHHHHHHHHHHHhcCCCCeeecCCCCCCEEe----CCC
Q 005045 463 DFKALVFEFMSNGNLDQWLHPSPAE--HYQFKKLSVIQRLNIAIDVASALDYLHHHCDTPIAHCDLKPSNVLL----DKD 536 (717)
Q Consensus 463 ~~~~lv~e~~~~~~L~~~l~~~~~~--~~~~~~~~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~dlkp~NIll----~~~ 536 (717)
...++||||+. ++|.+++...... ......+++..++.++.||+.||+|||+. +|+||||||+||++ +.+
T Consensus 93 ~~~~lv~e~~~-~~l~~~~~~~~~~~~~~~~~~l~~~~~~~i~~qi~~al~~LH~~---~ivH~Dlkp~NIll~~~~~~~ 168 (405)
T 3rgf_A 93 RKVWLLFDYAE-HDLWHIIKFHRASKANKKPVQLPRGMVKSLLYQILDGIHYLHAN---WVLHRDLKPANILVMGEGPER 168 (405)
T ss_dssp TEEEEEEECCS-EEHHHHHHHHHHHC-------CCHHHHHHHHHHHHHHHHHHHHT---TCCCCCCCGGGEEECCSSTTT
T ss_pred CeEEEEEeCCC-CCHHHHHHHhccccccccccCCCHHHHHHHHHHHHHHHHHHHhC---CEeCCCcCHHHeEEecCCCCC
Confidence 68999999996 5888777522100 00113589999999999999999999998 99999999999999 677
Q ss_pred CceEEeeeccchhcccccCCCCCCcceeecccccccccCCCccCC--CCCcccchhhHHHHHHHHHhCCCCCCCCC
Q 005045 537 MTAHVGDFGLAKFLFEISDNPSKNQTVSIGLKGSIGYIPPEHMNG--QVSILGDIYSYGILLLEMFTGKRPTGDMF 610 (717)
Q Consensus 537 ~~~kl~Dfg~~~~~~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~--~~~~~sDvwslG~vl~elltg~~p~~~~~ 610 (717)
+.+||+|||.++...... ..........||+.|+|||++.+ .++.++|||||||++|+|++|..||....
T Consensus 169 ~~~kl~Dfg~a~~~~~~~----~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~DiwSlG~il~ell~g~~pf~~~~ 240 (405)
T 3rgf_A 169 GRVKIADMGFARLFNSPL----KPLADLDPVVVTFWYRAPELLLGARHYTKAIDIWAIGCIFAELLTSEPIFHCRQ 240 (405)
T ss_dssp TCEEECCTTCCC--------------------CCCTTCCHHHHTTCCSCCHHHHHHHHHHHHHHHHHSSCTTCCCC
T ss_pred CcEEEEECCCceecCCCC----cccccCCCceecCcccCchhhcCCCcccchhhhHHHHHHHHHHHhCCCCCCCcc
Confidence 899999999998752211 11122334678999999999755 38999999999999999999999997653
No 274
>1j1b_A Glycogen synthase kinase-3 beta; complex, TAU, AMPPNP, transferase; HET: ANP; 1.80A {Homo sapiens} SCOP: d.144.1.7 PDB: 1i09_A* 1j1c_A* 2jld_A* 3m1s_A* 3pup_A* 3du8_A* 1pyx_A* 1q41_A* 1q3w_A* 1q3d_A* 1q4l_A* 3q3b_A* 1q5k_A* 3i4b_A* 3l1s_A* 1r0e_A* 3zrk_A* 3zrl_A* 3zrm_A* 4dit_A* ...
Probab=100.00 E-value=9.5e-37 Score=329.05 Aligned_cols=272 Identities=22% Similarity=0.291 Sum_probs=193.2
Q ss_pred cccccccccccCcccccceEEEEeC-CCchhhhHHhHhhhhhHHHHHHHHHHHHhcCCCCceeEEEEeeccccC-CCCce
Q 005045 387 STDNFSKENLIGTGSFGSVYKGTLG-DGTIVAIKVLKLQQQGALKSFIDECNALKSTRHRNILRVITACSSVDL-EGNDF 464 (717)
Q Consensus 387 ~~~~y~~~~~ig~g~~g~v~~~~~~-~~~~vavK~~~~~~~~~~~~~~~e~~~l~~l~h~ni~~~~~~~~~~~~-~~~~~ 464 (717)
...+|++.+.||+|+||.||+|++. +|+.||||++.... ....+|++++++++||||+++++++..... .+...
T Consensus 52 ~~~~y~~~~~lG~G~fg~Vy~~~~~~~~~~vaiK~~~~~~----~~~~~E~~il~~l~hpniv~l~~~~~~~~~~~~~~~ 127 (420)
T 1j1b_A 52 QEVSYTDTKVIGNGSFGVVYQAKLCDSGELVAIKKVLQDK----RFKNRELQIMRKLDHCNIVRLRYFFYSSGEKKDEVY 127 (420)
T ss_dssp EEEEEEEEEEEEECSSEEEEEEEETTTCCEEEEEEEECCT----TSCCHHHHHHHTCCCTTBCCEEEEEEEEETTTTEEE
T ss_pred ccceEEeeeEEeeCCCEEEEEEEECCCCcEEEEEEecccc----hhHHHHHHHHHHcCCCCccceeeEEeccCCCCccee
Confidence 3457999999999999999999975 79999999886432 223469999999999999999988754321 22335
Q ss_pred EEEEEecCCCCChhhhccCCCCCcccccccCHHHHHHHHHHHHHHHHHHHhcCCCCeeecCCCCCCEEeCCC-CceEEee
Q 005045 465 KALVFEFMSNGNLDQWLHPSPAEHYQFKKLSVIQRLNIAIDVASALDYLHHHCDTPIAHCDLKPSNVLLDKD-MTAHVGD 543 (717)
Q Consensus 465 ~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~dlkp~NIll~~~-~~~kl~D 543 (717)
.++||||+++ ++.+.+..... ....+++..++.++.||+.||+|||+. +|+||||||+||+++.+ +.+||+|
T Consensus 128 ~~lv~e~~~~-~l~~~~~~~~~---~~~~l~~~~~~~~~~qi~~aL~~LH~~---~ivHrDlkp~NILl~~~~~~~kl~D 200 (420)
T 1j1b_A 128 LNLVLDYVPE-TVYRVARHYSR---AKQTLPVIYVKLYMYQLFRSLAYIHSF---GICHRDIKPQNLLLDPDTAVLKLCD 200 (420)
T ss_dssp EEEEEECCCE-EHHHHHHHHHH---TTCCCCHHHHHHHHHHHHHHHHHHHTT---TEECSCCSGGGEEEETTTTEEEECC
T ss_pred EEeehhcccc-cHHHHHHHHhh---ccCCCCHHHHHHHHHHHHHHHHHHHHC---CccccCCChhhEEEeCCCCeEEecc
Confidence 7799999975 66665542100 115689999999999999999999997 99999999999999965 5789999
Q ss_pred eccchhcccccCCCCCCcceeecccccccccCCCccCC--CCCcccchhhHHHHHHHHHhCCCCCCCCCCCchhhhHHHH
Q 005045 544 FGLAKFLFEISDNPSKNQTVSIGLKGSIGYIPPEHMNG--QVSILGDIYSYGILLLEMFTGKRPTGDMFKDDFSIHMFVS 621 (717)
Q Consensus 544 fg~~~~~~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~--~~~~~sDvwslG~vl~elltg~~p~~~~~~~~~~~~~~~~ 621 (717)
||+++..... .......+|+.|+|||++.+ .++.++|||||||++|||++|+.||.+....+ .+.....
T Consensus 201 FG~a~~~~~~--------~~~~~~~~t~~y~aPE~~~~~~~~~~~~DiwSlG~il~ell~G~~pf~~~~~~~-~l~~i~~ 271 (420)
T 1j1b_A 201 FGSAKQLVRG--------EPNVSYICSRYYRAPELIFGATDYTSSIDVWSAGCVLAELLLGQPIFPGDSGVD-QLVEIIK 271 (420)
T ss_dssp CTTCEECCTT--------CCCCSCCSCTTSCCHHHHTTCSSCCTHHHHHHHHHHHHHHHHSSCSSCCSSHHH-HHHHHHH
T ss_pred chhhhhcccC--------CCceeeeeCCCcCCHHHHcCCCCCCchhhhHHHHHHHHHHHhCCCCCCCCCHHH-HHHHHHH
Confidence 9999865211 11223568999999999754 48999999999999999999999997643221 1111111
Q ss_pred h-cCC--hhhhhhcCCCCC-----CCCCCcHHHHHHHHHHHHHHhhhhhhhcchhhhHHHHHHHHHHhhccCCCCcCCCC
Q 005045 622 M-ALP--DHVMDILDPSMP-----LDEENDEEQIEEVIEEKEMMIHIDLEVNTKNKLEECFVSVLRIGLMCSTTSPRERI 693 (717)
Q Consensus 622 ~-~~~--~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~cl~~~p~~Rp 693 (717)
. ..+ +.+..+ ++... ......... ......+..+.+|+.+||+.||++||
T Consensus 272 ~lg~p~~~~~~~~-~~~~~~~~~p~~~~~~~~~---------------------~~~~~~~~~~~~Li~~~L~~dP~~R~ 329 (420)
T 1j1b_A 272 VLGTPTREQIREM-NPNYTEFKFPQIKAHPWTK---------------------VFRPRTPPEAIALCSRLLEYTPTARL 329 (420)
T ss_dssp HHCSCCHHHHHHH-CSCCCCCCCCCCCCCCHHH---------------------HSCTTSCHHHHHHHHHHSCSSGGGSC
T ss_pred HhCCCCHHHHHhh-ChhhhhhccCccCCCCHHH---------------------hcCCCCCHHHHHHHHHhccCChhHCC
Confidence 1 111 112111 11110 000000000 00112245678999999999999999
Q ss_pred CHHHHHH
Q 005045 694 AMNVVVN 700 (717)
Q Consensus 694 s~~eil~ 700 (717)
|+.|+++
T Consensus 330 t~~e~l~ 336 (420)
T 1j1b_A 330 TPLEACA 336 (420)
T ss_dssp CHHHHHT
T ss_pred CHHHHhC
Confidence 9999985
No 275
>1z57_A Dual specificity protein kinase CLK1; protein tyrosine kinase, splicing, human, 10Z-hymendialdisine, structural genomics; HET: DBQ; 1.70A {Homo sapiens} PDB: 2vag_A*
Probab=100.00 E-value=8.8e-37 Score=320.75 Aligned_cols=283 Identities=18% Similarity=0.244 Sum_probs=202.6
Q ss_pred ccccccccccccCcccccceEEEEe-C-CCchhhhHHhHhhhhhHHHHHHHHHHHHhcCCCC------ceeEEEEeeccc
Q 005045 386 KSTDNFSKENLIGTGSFGSVYKGTL-G-DGTIVAIKVLKLQQQGALKSFIDECNALKSTRHR------NILRVITACSSV 457 (717)
Q Consensus 386 ~~~~~y~~~~~ig~g~~g~v~~~~~-~-~~~~vavK~~~~~~~~~~~~~~~e~~~l~~l~h~------ni~~~~~~~~~~ 457 (717)
...++|++.+.||+|+||.||+|.+ + +++.||+|++.... .....+.+|+++++.+.|+ +++++++++.
T Consensus 11 ~~~~~y~~~~~lg~G~~g~V~~~~~~~~~~~~vavK~~~~~~-~~~~~~~~e~~~l~~l~~~~~~~~~~i~~~~~~~~-- 87 (339)
T 1z57_A 11 VLSARYEIVDTLGEGAFGKVVECIDHKAGGRHVAVKIVKNVD-RYCEAARSEIQVLEHLNTTDPNSTFRCVQMLEWFE-- 87 (339)
T ss_dssp EETTTEEEEEEEEEETTEEEEEEEETTTTTEEEEEEEECSSH-HHHHHHHHHHHHHHHHHHHCTTCTTCBCCEEEEEE--
T ss_pred CccCceEEEEEEecCCCeEEEEEEecCCCCcEEEEEEEecCC-chhHHHHHHHHHHHHhhhcCCCCceeeEeeecccc--
Confidence 4467999999999999999999986 3 78899999986432 3356778899999888655 4899999853
Q ss_pred cCCCCceEEEEEecCCCCChhhhccCCCCCcccccccCHHHHHHHHHHHHHHHHHHHhcCCCCeeecCCCCCCEEeCC--
Q 005045 458 DLEGNDFKALVFEFMSNGNLDQWLHPSPAEHYQFKKLSVIQRLNIAIDVASALDYLHHHCDTPIAHCDLKPSNVLLDK-- 535 (717)
Q Consensus 458 ~~~~~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~dlkp~NIll~~-- 535 (717)
..+..++||||+ +++|.+++..... ..+++..+..++.||+.||+|||+. +|+||||||+||+++.
T Consensus 88 ---~~~~~~lv~e~~-~~~l~~~l~~~~~-----~~~~~~~~~~~~~qi~~~l~~lH~~---~ivH~Dlkp~Nil~~~~~ 155 (339)
T 1z57_A 88 ---HHGHICIVFELL-GLSTYDFIKENGF-----LPFRLDHIRKMAYQICKSVNFLHSN---KLTHTDLKPENILFVQSD 155 (339)
T ss_dssp ---ETTEEEEEEECC-CCBHHHHHHHTTT-----CCCCHHHHHHHHHHHHHHHHHHHHT---TEECCCCCGGGEEESCCC
T ss_pred ---cCCcEEEEEcCC-CCCHHHHHHhcCC-----CCCcHHHHHHHHHHHHHHHHHHHHC---CCcCCCCCHHHEEEeccc
Confidence 445899999999 8899999875421 4688999999999999999999998 9999999999999987
Q ss_pred -----------------CCceEEeeeccchhcccccCCCCCCcceeecccccccccCCCccCC-CCCcccchhhHHHHHH
Q 005045 536 -----------------DMTAHVGDFGLAKFLFEISDNPSKNQTVSIGLKGSIGYIPPEHMNG-QVSILGDIYSYGILLL 597 (717)
Q Consensus 536 -----------------~~~~kl~Dfg~~~~~~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~-~~~~~sDvwslG~vl~ 597 (717)
++.+||+|||.+..... ......||+.|+|||++.+ .++.++|||||||++|
T Consensus 156 ~~~~~~~~~~~~~~~~~~~~~kl~Dfg~~~~~~~----------~~~~~~gt~~y~aPE~~~~~~~~~~~Di~slG~il~ 225 (339)
T 1z57_A 156 YTEAYNPKIKRDERTLINPDIKVVDFGSATYDDE----------HHSTLVSTRHYRAPEVILALGWSQPCDVWSIGCILI 225 (339)
T ss_dssp EEEEEC----CEEEEESCCCEEECCCSSCEETTS----------CCCSSCSCGGGCCHHHHTTSCCCTHHHHHHHHHHHH
T ss_pred cccccCCccccccccccCCCceEeeCcccccCcc----------ccccccCCccccChHHhhCCCCCcchhhHHHHHHHH
Confidence 66899999999875411 1123568999999999765 5899999999999999
Q ss_pred HHHhCCCCCCCCCCCch-hhhHHHHhcCChhhhhhcCC-------CCCCCCCCcHHHHHHHHHHHHHHhhhhhhhcchhh
Q 005045 598 EMFTGKRPTGDMFKDDF-SIHMFVSMALPDHVMDILDP-------SMPLDEENDEEQIEEVIEEKEMMIHIDLEVNTKNK 669 (717)
Q Consensus 598 elltg~~p~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 669 (717)
||++|..||......+. .........++..+...... ...+.. ... ........ ..........
T Consensus 226 el~~g~~pf~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~--~~~-~~~~~~~~-----~~~~~~~~~~ 297 (339)
T 1z57_A 226 EYYLGFTVFPTHDSKEHLAMMERILGPLPKHMIQKTRKRKYFHHDRLDWDE--HSS-AGRYVSRA-----CKPLKEFMLS 297 (339)
T ss_dssp HHHHSSCSCCCSCHHHHHHHHHHHHCSCCHHHHHHCSCGGGEETTEECCCT--TSH-HHHHHHHH-----CCCGGGGCSC
T ss_pred HHHhCCCCCCCCChHHHHHHHHHHhCCCCHHHHhhccchhHHhhccccccc--ccc-ccchhhhc-----Ccchhhhccc
Confidence 99999999976533221 11111122233222111110 000000 000 01000000 0000011112
Q ss_pred hHHHHHHHHHHhhccCCCCcCCCCCHHHHHHH
Q 005045 670 LEECFVSVLRIGLMCSTTSPRERIAMNVVVNN 701 (717)
Q Consensus 670 ~~~~~~~l~~li~~cl~~~p~~Rps~~eil~~ 701 (717)
...++..+.+++.+||+.||++|||++|+++.
T Consensus 298 ~~~~~~~l~~li~~~L~~dP~~Rpt~~ell~h 329 (339)
T 1z57_A 298 QDVEHERLFDLIQKMLEYDPAKRITLREALKH 329 (339)
T ss_dssp CSHHHHHHHHHHHHHTCSSTTTSCCHHHHTTS
T ss_pred chhhHHHHHHHHHHHhCcCcccccCHHHHhcC
Confidence 34557789999999999999999999999853
No 276
>2vx3_A Dual specificity tyrosine-phosphorylation- regula kinase 1A; serine/threonine-protein kinase, minibrain homolog, nucleotide-binding, transferase; HET: PTR D15 P6G; 2.40A {Homo sapiens} PDB: 2wo6_A* 3anq_A* 3anr_A*
Probab=100.00 E-value=3.2e-36 Score=321.54 Aligned_cols=209 Identities=30% Similarity=0.354 Sum_probs=169.6
Q ss_pred CCcccccccccccccccccCcccccceEEEEeC-CCchhhhHHhHhhhhhHHHHHHHHHHHHhcCC-CC-----ceeEEE
Q 005045 379 MSYSDISKSTDNFSKENLIGTGSFGSVYKGTLG-DGTIVAIKVLKLQQQGALKSFIDECNALKSTR-HR-----NILRVI 451 (717)
Q Consensus 379 ~s~~~~~~~~~~y~~~~~ig~g~~g~v~~~~~~-~~~~vavK~~~~~~~~~~~~~~~e~~~l~~l~-h~-----ni~~~~ 451 (717)
+.+.......++|++.+.||+|+||.||+|.+. +++.||+|++.... .....+..|+++++.+. |+ +|++++
T Consensus 44 ~~~~~~~~~~~~y~~~~~lG~G~~g~V~~~~~~~~~~~vaiK~~~~~~-~~~~~~~~e~~~l~~l~~~~~~~~~~iv~~~ 122 (382)
T 2vx3_A 44 YIVKNGEKWMDRYEIDSLIGKGSFGQVVKAYDRVEQEWVAIKIIKNKK-AFLNQAQIEVRLLELMNKHDTEMKYYIVHLK 122 (382)
T ss_dssp BCCCTTCEETTTEEEEEEEEEETTEEEEEEEETTTTEEEEEEEECSSH-HHHHHHHHHHHHHHHHHHCSSGGGGGBCCEE
T ss_pred EEeecCCEeeeeEEEEEEEeecCCEEEEEEEEcCCCcEEEEEEEeccH-HHHHHHHHHHHHHHHHHhcccccceeEEEee
Confidence 344555666889999999999999999999965 78899999987432 23466777888888774 44 499998
Q ss_pred EeeccccCCCCceEEEEEecCCCCChhhhccCCCCCcccccccCHHHHHHHHHHHHHHHHHHHhcCCCCeeecCCCCCCE
Q 005045 452 TACSSVDLEGNDFKALVFEFMSNGNLDQWLHPSPAEHYQFKKLSVIQRLNIAIDVASALDYLHHHCDTPIAHCDLKPSNV 531 (717)
Q Consensus 452 ~~~~~~~~~~~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~dlkp~NI 531 (717)
+.+. ..+..++||||++ ++|.+++..... ..+++..+..++.||+.||.|||++ ..+|+||||||+||
T Consensus 123 ~~~~-----~~~~~~lv~e~~~-~~L~~~l~~~~~-----~~~~~~~~~~i~~qi~~al~~lH~~-~~~ivHrDlkp~NI 190 (382)
T 2vx3_A 123 RHFM-----FRNHLCLVFEMLS-YNLYDLLRNTNF-----RGVSLNLTRKFAQQMCTALLFLATP-ELSIIHCDLKPENI 190 (382)
T ss_dssp EEEE-----ETTEEEEEEECCC-CBHHHHHHHTTT-----SCCCHHHHHHHHHHHHHHHHHHTST-TTCEECCCCSGGGE
T ss_pred eeec-----cCCceEEEEecCC-CCHHHHHhhcCc-----CCCCHHHHHHHHHHHHHHHHHhccC-CCCEEcCCCCcccE
Confidence 8854 3458999999995 599999875421 4589999999999999999999952 23899999999999
Q ss_pred EeC--CCCceEEeeeccchhcccccCCCCCCcceeecccccccccCCCccCC-CCCcccchhhHHHHHHHHHhCCCCCCC
Q 005045 532 LLD--KDMTAHVGDFGLAKFLFEISDNPSKNQTVSIGLKGSIGYIPPEHMNG-QVSILGDIYSYGILLLEMFTGKRPTGD 608 (717)
Q Consensus 532 ll~--~~~~~kl~Dfg~~~~~~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~-~~~~~sDvwslG~vl~elltg~~p~~~ 608 (717)
+++ .++.+||+|||.++.... ......||+.|+|||++.+ .++.++|||||||++|+|++|..||..
T Consensus 191 ll~~~~~~~~kL~DFG~a~~~~~----------~~~~~~~t~~y~aPE~~~~~~~~~~~DiwSlG~il~elltg~~pf~~ 260 (382)
T 2vx3_A 191 LLCNPKRSAIKIVDFGSSCQLGQ----------RIYQYIQSRFYRSPEVLLGMPYDLAIDMWSLGCILVEMHTGEPLFSG 260 (382)
T ss_dssp EESSTTSCCEEECCCTTCEETTC----------CCCSSCSCGGGCCHHHHTTCCCCTHHHHHHHHHHHHHHHHSSCSSCC
T ss_pred EEecCCCCcEEEEeccCceeccc----------ccccccCCccccChHHHcCCCCCcHHHHHHHHHHHHHHHhCCCCCCC
Confidence 995 477899999999986521 1223568999999999665 589999999999999999999999986
Q ss_pred CC
Q 005045 609 MF 610 (717)
Q Consensus 609 ~~ 610 (717)
..
T Consensus 261 ~~ 262 (382)
T 2vx3_A 261 AN 262 (382)
T ss_dssp SS
T ss_pred CC
Confidence 53
No 277
>1zy4_A Serine/threonine-protein kinase GCN2; translation regulator, signal transduction, acid starvation, starvation stress response; 1.95A {Saccharomyces cerevisiae} PDB: 1zy5_A* 1zyd_A* 1zyc_A* 1zxe_A
Probab=100.00 E-value=2.8e-36 Score=311.62 Aligned_cols=262 Identities=24% Similarity=0.356 Sum_probs=190.8
Q ss_pred cccccccccccCcccccceEEEEeC-CCchhhhHHhHhhhhhHHHHHHHHHHHHhcCCCCceeEEEEeecccc-------
Q 005045 387 STDNFSKENLIGTGSFGSVYKGTLG-DGTIVAIKVLKLQQQGALKSFIDECNALKSTRHRNILRVITACSSVD------- 458 (717)
Q Consensus 387 ~~~~y~~~~~ig~g~~g~v~~~~~~-~~~~vavK~~~~~~~~~~~~~~~e~~~l~~l~h~ni~~~~~~~~~~~------- 458 (717)
..++|++.+.||+|+||.||.|++. +++.||+|.+... ....+.+.+|++++++++||||+++++++....
T Consensus 4 ~~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~-~~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~~~~~~~~~~ 82 (303)
T 1zy4_A 4 YASDFEEIAVLGQGAFGQVVKARNALDSRYYAIKKIRHT-EEKLSTILSEVMLLASLNHQYVVRYYAAWLERRNFVKPMT 82 (303)
T ss_dssp HHHHEEEEEEEEECSSEEEEEEEETTTCCEEEEEEEEEE-HHHHHHHHHHHHHHTTCCCTTBCCEEEEEEECCCCCC---
T ss_pred ccccchhhheeccCCcEEEEEEEEcCCCeEEEEEEEecc-HHHHHHHHHHHHHHHhcCchHHHHHHHHHHhhcchhhhhc
Confidence 3568999999999999999999965 8999999998643 234577889999999999999999999865421
Q ss_pred -CCCCceEEEEEecCCCCChhhhccCCCCCcccccccCHHHHHHHHHHHHHHHHHHHhcCCCCeeecCCCCCCEEeCCCC
Q 005045 459 -LEGNDFKALVFEFMSNGNLDQWLHPSPAEHYQFKKLSVIQRLNIAIDVASALDYLHHHCDTPIAHCDLKPSNVLLDKDM 537 (717)
Q Consensus 459 -~~~~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~dlkp~NIll~~~~ 537 (717)
.......++||||+++++|.+++.... ..+++..++.++.||+.||+|||+. +++||||||+||+++.++
T Consensus 83 ~~~~~~~~~lv~e~~~~~~L~~~l~~~~------~~~~~~~~~~i~~qi~~~l~~LH~~---~i~H~dlkp~Nil~~~~~ 153 (303)
T 1zy4_A 83 AVKKKSTLFIQMEYCENGTLYDLIHSEN------LNQQRDEYWRLFRQILEALSYIHSQ---GIIHRDLKPMNIFIDESR 153 (303)
T ss_dssp ---CEEEEEEEEECCCSCBHHHHHHHSC------GGGCHHHHHHHHHHHHHHHHHHHHT---TCCCSCCCGGGEEECTTS
T ss_pred ccccCCceEEEEecCCCCCHHHhhhccc------cccchHHHHHHHHHHHHHHHHHHhC---CeecccCCHHhEEEcCCC
Confidence 123567899999999999999997432 4678899999999999999999998 999999999999999999
Q ss_pred ceEEeeeccchhcccccCCC-------CCCcceeecccccccccCCCccCC--CCCcccchhhHHHHHHHHHhCCCCCCC
Q 005045 538 TAHVGDFGLAKFLFEISDNP-------SKNQTVSIGLKGSIGYIPPEHMNG--QVSILGDIYSYGILLLEMFTGKRPTGD 608 (717)
Q Consensus 538 ~~kl~Dfg~~~~~~~~~~~~-------~~~~~~~~~~~~~~~y~aPE~~~~--~~~~~sDvwslG~vl~elltg~~p~~~ 608 (717)
.+||+|||.+.......... ...........|++.|+|||++.+ .++.++|||||||++|+|++ ||..
T Consensus 154 ~~kl~dfg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~~Di~slG~il~~l~~---p~~~ 230 (303)
T 1zy4_A 154 NVKIGDFGLAKNVHRSLDILKLDSQNLPGSSDNLTSAIGTAMYVATEVLDGTGHYNEKIDMYSLGIIFFEMIY---PFST 230 (303)
T ss_dssp CEEECCCCCCSCTTC-------------------------CTTSCHHHHTSCSCCCTHHHHHHHHHHHHHHHS---CCSS
T ss_pred CEEEeeCcchhhcccccchhccccccccccccccccCCCcccccCcccccCCCCCcchhhHHHHHHHHHHHHh---ccCC
Confidence 99999999997653211000 001122234568999999999754 48999999999999999998 5532
Q ss_pred CCCCchhhhHHHHhcCChhhhhhcCCCCCCCCCCcHHHHHHHHHHHHHHhhhhhhhcchhhhHHHHHHHHHHhhccCCCC
Q 005045 609 MFKDDFSIHMFVSMALPDHVMDILDPSMPLDEENDEEQIEEVIEEKEMMIHIDLEVNTKNKLEECFVSVLRIGLMCSTTS 688 (717)
Q Consensus 609 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~cl~~~ 688 (717)
.... ....... .. .....+.. ...+++..+.+++.+||+.|
T Consensus 231 ~~~~-~~~~~~~--------~~-~~~~~~~~-----------------------------~~~~~~~~~~~li~~~l~~d 271 (303)
T 1zy4_A 231 GMER-VNILKKL--------RS-VSIEFPPD-----------------------------FDDNKMKVEKKIIRLLIDHD 271 (303)
T ss_dssp HHHH-HHHHHHH--------HS-TTCCCCTT-----------------------------CCTTTSHHHHHHHHHHTCSS
T ss_pred chhH-HHHHHhc--------cc-cccccCcc-----------------------------ccccchHHHHHHHHHHHhcC
Confidence 1100 0000000 00 00000000 01122456788999999999
Q ss_pred cCCCCCHHHHHH
Q 005045 689 PRERIAMNVVVN 700 (717)
Q Consensus 689 p~~Rps~~eil~ 700 (717)
|++|||+.|+++
T Consensus 272 p~~Rps~~~ll~ 283 (303)
T 1zy4_A 272 PNKRPGARTLLN 283 (303)
T ss_dssp GGGSCCHHHHHH
T ss_pred cccCcCHHHHhC
Confidence 999999999986
No 278
>3fhr_A MAP kinase-activated protein kinase 3; kinase-inhibitor complex, ATP-binding, cytoplasm, nucleotide-binding, nucleus, phosphoprotein, polymorphism; HET: P4O; 1.90A {Homo sapiens} PDB: 3fxw_A* 3r1n_A* 3she_A* 2oza_A 3fyk_X* 3fyj_X* 2p3g_X* 3ka0_A* 3fpm_A* 2pzy_A* 3a2c_A* 3kc3_A* 3gok_A* 2jbo_A* 2jbp_A* 3r2y_A* 3r30_A* 3r2b_A*
Probab=100.00 E-value=2.5e-36 Score=316.34 Aligned_cols=258 Identities=20% Similarity=0.290 Sum_probs=173.1
Q ss_pred cccccccccc-ccCcccccceEEEEeC-CCchhhhHHhHhhhhhHHHHHHHHHHHHhcCCCCceeEEEEeeccccCCCCc
Q 005045 386 KSTDNFSKEN-LIGTGSFGSVYKGTLG-DGTIVAIKVLKLQQQGALKSFIDECNALKSTRHRNILRVITACSSVDLEGND 463 (717)
Q Consensus 386 ~~~~~y~~~~-~ig~g~~g~v~~~~~~-~~~~vavK~~~~~~~~~~~~~~~e~~~l~~l~h~ni~~~~~~~~~~~~~~~~ 463 (717)
...++|++.+ .||+|+||.||+|.++ +++.||+|++.... ....+....++.+.||||+++++++.... ....
T Consensus 25 ~~~~~y~i~~~~lG~G~~g~V~~~~~~~~~~~vavK~~~~~~----~~~~e~~~~~~~~~h~~i~~~~~~~~~~~-~~~~ 99 (336)
T 3fhr_A 25 AVTDDYQLSKQVLGLGVNGKVLECFHRRTGQKCALKLLYDSP----KARQEVDHHWQASGGPHIVCILDVYENMH-HGKR 99 (336)
T ss_dssp CGGGTEEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEESSH----HHHHHHHHHHHHTTSTTBCCEEEEEEEEE-TTEE
T ss_pred cccceeEecceeeeeCCCeEEEEEEECCCCCEEEEEEecCcH----HHHHHHHHHHHhcCCCChHHHHHHHhhcc-CCCc
Confidence 4567899965 6999999999999976 79999999986432 11122333456679999999999875432 2345
Q ss_pred eEEEEEecCCCCChhhhccCCCCCcccccccCHHHHHHHHHHHHHHHHHHHhcCCCCeeecCCCCCCEEeCC---CCceE
Q 005045 464 FKALVFEFMSNGNLDQWLHPSPAEHYQFKKLSVIQRLNIAIDVASALDYLHHHCDTPIAHCDLKPSNVLLDK---DMTAH 540 (717)
Q Consensus 464 ~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~dlkp~NIll~~---~~~~k 540 (717)
..++||||+++++|.+++..... ..+++..++.++.||+.||+|||+. +|+||||||+||+++. ++.+|
T Consensus 100 ~~~lv~e~~~gg~L~~~l~~~~~-----~~l~~~~~~~i~~ql~~~l~~LH~~---~ivH~dlkp~NIll~~~~~~~~~k 171 (336)
T 3fhr_A 100 CLLIIMECMEGGELFSRIQERGD-----QAFTEREAAEIMRDIGTAIQFLHSH---NIAHRDVKPENLLYTSKEKDAVLK 171 (336)
T ss_dssp EEEEEEECCTTEEHHHHHHTC-C-----CCCBHHHHHHHHHHHHHHHHHHHHT---TEECSCCSGGGEEESCSSTTCCEE
T ss_pred eEEEEEeccCCCCHHHHHHhcCC-----CCCCHHHHHHHHHHHHHHHHHHHhC---CeecCCCCHHHEEEEecCCCceEE
Confidence 68999999999999999986532 4689999999999999999999998 9999999999999986 45699
Q ss_pred EeeeccchhcccccCCCCCCcceeecccccccccCCCccCC-CCCcccchhhHHHHHHHHHhCCCCCCCCCCCchhhhHH
Q 005045 541 VGDFGLAKFLFEISDNPSKNQTVSIGLKGSIGYIPPEHMNG-QVSILGDIYSYGILLLEMFTGKRPTGDMFKDDFSIHMF 619 (717)
Q Consensus 541 l~Dfg~~~~~~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~-~~~~~sDvwslG~vl~elltg~~p~~~~~~~~~~~~~~ 619 (717)
|+|||.+..... .......+++.|+|||++.+ .++.++|||||||++|+|++|..||...........
T Consensus 172 l~Dfg~~~~~~~---------~~~~~~~~t~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~g~~pf~~~~~~~~~~~-- 240 (336)
T 3fhr_A 172 LTDFGFAKETTQ---------NALQTPCYTPYYVAPEVLGPEKYDKSCDMWSLGVIMYILLCGFPPFYSNTGQAISPG-- 240 (336)
T ss_dssp ECCCTTCEEC-------------------------------CHHHHHHHHHHHHHHHHHHHHSSCCC-------------
T ss_pred Eeccccceeccc---------cccccCCCCcCccChhhhCCCCCCchhhHHHHHHHHHHHHHCCCCCCCccchhhhhh--
Confidence 999999975421 11223557999999999755 478999999999999999999999965433211000
Q ss_pred HHhcCChhhhhhcCCCCCCCCCCcHHHHHHHHHHHHHHhhhhhhhcchhhhHHHHHHHHHHhhccCCCCcCCCCCHHHHH
Q 005045 620 VSMALPDHVMDILDPSMPLDEENDEEQIEEVIEEKEMMIHIDLEVNTKNKLEECFVSVLRIGLMCSTTSPRERIAMNVVV 699 (717)
Q Consensus 620 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~cl~~~p~~Rps~~eil 699 (717)
....+ ........ ......++..+.+++.+||+.+|++|||++|++
T Consensus 241 ~~~~~-------~~~~~~~~---------------------------~~~~~~~~~~~~~li~~~L~~dP~~Rpt~~ell 286 (336)
T 3fhr_A 241 MKRRI-------RLGQYGFP---------------------------NPEWSEVSEDAKQLIRLLLKTDPTERLTITQFM 286 (336)
T ss_dssp -----------------CCC---------------------------TTTSTTCCHHHHHHHHHHSCSSGGGSCCHHHHH
T ss_pred HHHhh-------hccccccC---------------------------chhhccCCHHHHHHHHHHCCCChhHCcCHHHHh
Confidence 00000 00000000 000112355678999999999999999999999
Q ss_pred HH
Q 005045 700 NN 701 (717)
Q Consensus 700 ~~ 701 (717)
+.
T Consensus 287 ~h 288 (336)
T 3fhr_A 287 NH 288 (336)
T ss_dssp HS
T ss_pred cC
Confidence 73
No 279
>3coi_A Mitogen-activated protein kinase 13; P38D, P38delta, ERK, MAP kinase, PMK, STK26, stress-activated protein kinase, structural genomics, PSI; 2.09A {Homo sapiens}
Probab=100.00 E-value=6.7e-36 Score=315.72 Aligned_cols=276 Identities=20% Similarity=0.233 Sum_probs=196.3
Q ss_pred cccccccccccCcccccceEEEEeC-CCchhhhHHhHhh--hhhHHHHHHHHHHHHhcCCCCceeEEEEeeccccC-CCC
Q 005045 387 STDNFSKENLIGTGSFGSVYKGTLG-DGTIVAIKVLKLQ--QQGALKSFIDECNALKSTRHRNILRVITACSSVDL-EGN 462 (717)
Q Consensus 387 ~~~~y~~~~~ig~g~~g~v~~~~~~-~~~~vavK~~~~~--~~~~~~~~~~e~~~l~~l~h~ni~~~~~~~~~~~~-~~~ 462 (717)
..++|.+.+.||+|+||.||.|.++ +|+.||+|++... .....+.+.+|+.++++++||||+++++++..... ...
T Consensus 22 l~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~~~ 101 (353)
T 3coi_A 22 LPKTYVSPTHVGSGAYGSVCSAIDKRSGEKVAIKKLSRPFQSEIFAKRAYRELLLLKHMQHENVIGLLDVFTPASSLRNF 101 (353)
T ss_dssp EETTEEEEEEEEECSSEEEEEEEETTTTEEEEEEEESSTTSSHHHHHHHHHHHHHHHHCCCTTBCCCSEEECSCSSGGGC
T ss_pred cCceEEEeeeEecCCCeEEEEEEECCCCCEEEEEEecccccchHHHHHHHHHHHHHHhcCCCCcccHhheEecccccccc
Confidence 3578999999999999999999965 7999999998643 23345778899999999999999999998654321 111
Q ss_pred ceEEEEEecCCCCChhhhccCCCCCcccccccCHHHHHHHHHHHHHHHHHHHhcCCCCeeecCCCCCCEEeCCCCceEEe
Q 005045 463 DFKALVFEFMSNGNLDQWLHPSPAEHYQFKKLSVIQRLNIAIDVASALDYLHHHCDTPIAHCDLKPSNVLLDKDMTAHVG 542 (717)
Q Consensus 463 ~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~dlkp~NIll~~~~~~kl~ 542 (717)
...++||||++ ++|.+++. ..+++..+..++.||+.||+|||++ +|+||||||+||+++.++.+||+
T Consensus 102 ~~~~lv~e~~~-~~l~~~~~---------~~~~~~~~~~i~~qi~~al~~LH~~---~ivH~dlkp~NIl~~~~~~~kl~ 168 (353)
T 3coi_A 102 YDFYLVMPFMQ-TDLQKIMG---------LKFSEEKIQYLVYQMLKGLKYIHSA---GVVHRDLKPGNLAVNEDCELKIL 168 (353)
T ss_dssp CCCEEEEECCS-EEGGGTTT---------SCCCHHHHHHHHHHHHHHHHHHHHT---TCCCSSCCGGGEEECTTCCEEEC
T ss_pred eeEEEEecccc-CCHHHHhc---------CCCCHHHHHHHHHHHHHHHHHHHHC---CcccCCCCHHHEeECCCCcEEEe
Confidence 24599999996 68888774 3489999999999999999999998 99999999999999999999999
Q ss_pred eeccchhcccccCCCCCCcceeecccccccccCCCccCC--CCCcccchhhHHHHHHHHHhCCCCCCCCCCCchhhhHHH
Q 005045 543 DFGLAKFLFEISDNPSKNQTVSIGLKGSIGYIPPEHMNG--QVSILGDIYSYGILLLEMFTGKRPTGDMFKDDFSIHMFV 620 (717)
Q Consensus 543 Dfg~~~~~~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~--~~~~~sDvwslG~vl~elltg~~p~~~~~~~~~~~~~~~ 620 (717)
|||.+..... ......+++.|+|||++.+ .++.++|||||||++|+|++|..||......+. .....
T Consensus 169 Dfg~~~~~~~----------~~~~~~~t~~y~aPE~~~~~~~~~~~~Di~slG~il~el~~g~~pf~~~~~~~~-~~~i~ 237 (353)
T 3coi_A 169 DFGLARHADA----------EMTGYVVTRWYRAPEVILSWMHYNQTVDIWSVGCIMAEMLTGKTLFKGKDYLDQ-LTQIL 237 (353)
T ss_dssp STTCTTC------------------CCSBCCSCHHHHSCCSCCCTTHHHHHHHHHHHHHHHSSCSSBSSCHHHH-HHHHH
T ss_pred ecccccCCCC----------CccccccCcCcCCHHHHhCcCCCCchhhHHHHHHHHHHHHhCCCCCCCCCHHHH-HHHHH
Confidence 9999876411 1223568999999999655 579999999999999999999999976432211 11111
Q ss_pred H--hcCChhhhhhcCCCCCCCCCCcHHHHHHHHHHHHHHhhhhhhhcchhhhHHHHHHHHHHhhccCCCCcCCCCCHHHH
Q 005045 621 S--MALPDHVMDILDPSMPLDEENDEEQIEEVIEEKEMMIHIDLEVNTKNKLEECFVSVLRIGLMCSTTSPRERIAMNVV 698 (717)
Q Consensus 621 ~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~cl~~~p~~Rps~~ei 698 (717)
. ...+..+...+.. ......... ........-......++..+.+++.+||+.||++|||++|+
T Consensus 238 ~~~~~~~~~~~~~~~~----------~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dp~~Rpt~~e~ 303 (353)
T 3coi_A 238 KVTGVPGTEFVQKLND----------KAAKSYIQS----LPQTPRKDFTQLFPRASPQAADLLEKMLELDVDKRLTAAQA 303 (353)
T ss_dssp HHHCBCCHHHHTTCSC----------HHHHHHHHT----SCBCSSCCTTTTCTTSCHHHHHHHHHHSCSCTTTSCCHHHH
T ss_pred HHhCCCCHHHHHHHhh----------HHHHHHHHh----CcCCCCccHHHhcCCcCHHHHHHHHHHcCCCcccCCCHHHH
Confidence 1 0111111111000 000000000 00000000001112346678999999999999999999999
Q ss_pred HH
Q 005045 699 VN 700 (717)
Q Consensus 699 l~ 700 (717)
++
T Consensus 304 l~ 305 (353)
T 3coi_A 304 LT 305 (353)
T ss_dssp HT
T ss_pred hc
Confidence 85
No 280
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=100.00 E-value=4.5e-34 Score=298.71 Aligned_cols=289 Identities=20% Similarity=0.276 Sum_probs=177.8
Q ss_pred CCCEEECCCCcccccCCcCCCCCCCCCEEEccCccccccCCccccCCCCCCEEeccCCcCcccCChhhhccCCCCeEecc
Q 005045 35 ELRSFEASVNDFVGQIPNQLSSLTKLEIIGLGGSNLTGNVPAWIGNFSSLKALSLAWNNLRGSIPNELGQLSGLGFFTLY 114 (717)
Q Consensus 35 ~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~ 114 (717)
+++.++++++.++ .+|..+. ++|++|+|++|++++..+..|.++++|++|+|++|++++..|..|.++++|++|+|+
T Consensus 32 ~l~~l~~~~~~l~-~lp~~~~--~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls 108 (330)
T 1xku_A 32 HLRVVQCSDLGLE-KVPKDLP--PDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLS 108 (330)
T ss_dssp ETTEEECTTSCCC-SCCCSCC--TTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECC
T ss_pred CCeEEEecCCCcc-ccCccCC--CCCeEEECCCCcCCEeChhhhccCCCCCEEECCCCcCCeeCHHHhcCCCCCCEEECC
Confidence 4555555555555 3444332 345555555555554444445555555555555555554445555555555555555
Q ss_pred CCCCCCCCCccccCCCCccEEEcccCcccccCCcccccCCCCcceeecccccccc--cCCccCCCCCCCCEEeccCcccc
Q 005045 115 GNFISGIIPSSIYNISSIYYFSVTQNQLHGQLPTDVGLTLPNLKIFAGAVNYFTG--SIPVSLSNASNLQVLDFAENGLT 192 (717)
Q Consensus 115 ~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~~l~~~~~~~l~~L~~L~l~~n~l~~--~~~~~~~~l~~L~~L~l~~N~l~ 192 (717)
+|.++. +|..+. ++|++|++++|.++ .++...+..+++|+.|++++|.+.. ..+..+.++++|++|++++|.++
T Consensus 109 ~n~l~~-l~~~~~--~~L~~L~l~~n~l~-~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~ 184 (330)
T 1xku_A 109 KNQLKE-LPEKMP--KTLQELRVHENEIT-KVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNIT 184 (330)
T ss_dssp SSCCSB-CCSSCC--TTCCEEECCSSCCC-BBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSSCCC
T ss_pred CCcCCc-cChhhc--ccccEEECCCCccc-ccCHhHhcCCccccEEECCCCcCCccCcChhhccCCCCcCEEECCCCccc
Confidence 555552 232222 45555555555555 4444444455555555555555542 45556667777777777777777
Q ss_pred ccCCCCccCCCCCCeeeccccccCCcccCchhhhhhhccCCCCCEEEeecCcccCcCchhhhhccccccEEecCCCccCC
Q 005045 193 GTIPGNFGSLKDLVRLNFDQNELGSREIGDLNFLKFLANCTSLEVLGLARNSFGGEMPISIANLSTHLRRLTMGENLMHG 272 (717)
Q Consensus 193 ~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~~~~L~~L~l~~N~l~~ 272 (717)
.+|..+. ++|++|++++|.++.+. +..+.++++|+.|+|++|.+++..+..+..+ ++|++|++++|.++
T Consensus 185 -~l~~~~~--~~L~~L~l~~n~l~~~~------~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l-~~L~~L~L~~N~l~- 253 (330)
T 1xku_A 185 -TIPQGLP--PSLTELHLDGNKITKVD------AASLKGLNNLAKLGLSFNSISAVDNGSLANT-PHLRELHLNNNKLV- 253 (330)
T ss_dssp -SCCSSCC--TTCSEEECTTSCCCEEC------TGGGTTCTTCCEEECCSSCCCEECTTTGGGS-TTCCEEECCSSCCS-
T ss_pred -cCCcccc--ccCCEEECCCCcCCccC------HHHhcCCCCCCEEECCCCcCceeChhhccCC-CCCCEEECCCCcCc-
Confidence 3444333 67777777777777665 4566777777777777777775555556655 47777777777777
Q ss_pred CCCccccCCCCCCEEEccCCcCccccchhhhc------CCCCCeEEcccCcCCC--CCCcccccccccceeeccccc
Q 005045 273 NIPVGIGNLVNLNLLGLEGNNLSGSVPEVIGR------LNKLEGLGLNVNKFSG--LIPSSLGNLTILTRLWMEENR 341 (717)
Q Consensus 273 ~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~------l~~L~~L~Ls~N~l~~--~~~~~~~~l~~L~~L~L~~N~ 341 (717)
.+|..+..+++|++|+|++|+|++..+..|.. .+.|+.|++++|++.. +.|..|..+..|+.++|++|+
T Consensus 254 ~lp~~l~~l~~L~~L~l~~N~i~~~~~~~f~~~~~~~~~~~l~~l~l~~N~~~~~~i~~~~f~~~~~l~~l~L~~N~ 330 (330)
T 1xku_A 254 KVPGGLADHKYIQVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQYWEIQPSTFRCVYVRAAVQLGNYK 330 (330)
T ss_dssp SCCTTTTTCSSCCEEECCSSCCCCCCTTSSSCSSCCTTSCCCSEEECCSSSSCGGGSCGGGGTTCCCGGGEEC----
T ss_pred cCChhhccCCCcCEEECCCCcCCccChhhcCCcccccccccccceEeecCcccccccCccccccccceeEEEecccC
Confidence 56777777888888888888888666665643 3677888888888763 567788888888888888885
No 281
>3a99_A Proto-oncogene serine/threonine-protein kinase PI; PIM-1, P27KIP1, peptide drug, prostate cancer, transferase; HET: ANP; 1.60A {Homo sapiens} PDB: 3bgq_A* 3bgp_A* 2obj_A* 3bgz_A* 3t9i_A* 3dcv_A* 1xws_A* 2xj1_A* 2xix_A* 2xiz_A* 2xj0_A* 2xiy_A* 2xj2_A* 3f2a_A* 1xr1_A* 1xqz_A* 3cy2_A* 3cxw_A* 3cy3_A* 2bik_B* ...
Probab=100.00 E-value=1e-36 Score=317.16 Aligned_cols=247 Identities=22% Similarity=0.286 Sum_probs=193.3
Q ss_pred CcccccccccccccccccCcccccceEEEEeC-CCchhhhHHhHhhhhh------HHHHHHHHHHHHhcCC--CCceeEE
Q 005045 380 SYSDISKSTDNFSKENLIGTGSFGSVYKGTLG-DGTIVAIKVLKLQQQG------ALKSFIDECNALKSTR--HRNILRV 450 (717)
Q Consensus 380 s~~~~~~~~~~y~~~~~ig~g~~g~v~~~~~~-~~~~vavK~~~~~~~~------~~~~~~~e~~~l~~l~--h~ni~~~ 450 (717)
+..+.....++|++.+.||+|+||.||+|.+. +++.||+|++...... ....+.+|+.+++++. |+||+++
T Consensus 34 ~~~~~~~~~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~~~~~~i~~~ 113 (320)
T 3a99_A 34 PGKEKEPLESQYQVGPLLGSGGFGSVYSGIRVSDNLPVAIKHVEKDRISDWGELPNGTRVPMEVVLLKKVSSGFSGVIRL 113 (320)
T ss_dssp ------CCTTTEEEEEECSSSSSCEEEEEEETTTTEEEEEEEEEGGGCCCEEECTTCCEEEHHHHHHHHHCSSSCSBCCE
T ss_pred cccccCCccCceEEEEEEeeCCCeEEEEEEECCCCcEEEEEEEecccchhhhhhhhhhHHHHHHHHHHhhccCCCCceEE
Confidence 34445566889999999999999999999954 7899999998754321 2245667999999995 5999999
Q ss_pred EEeeccccCCCCceEEEEEecCCC-CChhhhccCCCCCcccccccCHHHHHHHHHHHHHHHHHHHhcCCCCeeecCCCCC
Q 005045 451 ITACSSVDLEGNDFKALVFEFMSN-GNLDQWLHPSPAEHYQFKKLSVIQRLNIAIDVASALDYLHHHCDTPIAHCDLKPS 529 (717)
Q Consensus 451 ~~~~~~~~~~~~~~~~lv~e~~~~-~~L~~~l~~~~~~~~~~~~~~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~dlkp~ 529 (717)
++++. ..+..++|||++.+ ++|.+++... ..+++..+..++.||+.||+|||+. +|+||||||+
T Consensus 114 ~~~~~-----~~~~~~lv~e~~~~~~~L~~~l~~~-------~~l~~~~~~~i~~qi~~~L~~LH~~---~ivH~Dlkp~ 178 (320)
T 3a99_A 114 LDWFE-----RPDSFVLILERPEPVQDLFDFITER-------GALQEELARSFFWQVLEAVRHCHNC---GVLHRDIKDE 178 (320)
T ss_dssp EEEEE-----CSSEEEEEEECCSSEEEHHHHHHHH-------CSCCHHHHHHHHHHHHHHHHHHHHT---TEECCCCSGG
T ss_pred EEEEe-----cCCcEEEEEEcCCCCccHHHHHhcc-------CCCCHHHHHHHHHHHHHHHHHHHHC---CcEeCCCCHH
Confidence 99954 45589999999975 8999998743 5689999999999999999999997 9999999999
Q ss_pred CEEeC-CCCceEEeeeccchhcccccCCCCCCcceeecccccccccCCCccCC-C-CCcccchhhHHHHHHHHHhCCCCC
Q 005045 530 NVLLD-KDMTAHVGDFGLAKFLFEISDNPSKNQTVSIGLKGSIGYIPPEHMNG-Q-VSILGDIYSYGILLLEMFTGKRPT 606 (717)
Q Consensus 530 NIll~-~~~~~kl~Dfg~~~~~~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~-~-~~~~sDvwslG~vl~elltg~~p~ 606 (717)
||+++ .++.+||+|||.+..... .......|++.|+|||++.+ . .+.++|||||||++|+|++|..||
T Consensus 179 NIll~~~~~~~kL~Dfg~~~~~~~---------~~~~~~~gt~~y~aPE~~~~~~~~~~~~Di~slG~il~el~~g~~pf 249 (320)
T 3a99_A 179 NILIDLNRGELKLIDFGSGALLKD---------TVYTDFDGTRVYSPPEWIRYHRYHGRSAAVWSLGILLYDMVCGDIPF 249 (320)
T ss_dssp GEEEETTTTEEEECCCTTCEECCS---------SCBCCCCSCGGGSCHHHHHHSCBCHHHHHHHHHHHHHHHHHHSSCSC
T ss_pred HEEEeCCCCCEEEeeCcccccccc---------ccccCCCCCccCCChHHhccCCCCCccchHHhHHHHHHHHHHCCCCC
Confidence 99999 789999999999886521 11223568999999999654 3 368899999999999999999999
Q ss_pred CCCCCCchhhhHHHHhcCChhhhhhcCCCCCCCCCCcHHHHHHHHHHHHHHhhhhhhhcchhhhHHHHHHHHHHhhccCC
Q 005045 607 GDMFKDDFSIHMFVSMALPDHVMDILDPSMPLDEENDEEQIEEVIEEKEMMIHIDLEVNTKNKLEECFVSVLRIGLMCST 686 (717)
Q Consensus 607 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~cl~ 686 (717)
.... ..... ..... ..++..+.+++.+||+
T Consensus 250 ~~~~-------~~~~~------------~~~~~-------------------------------~~~~~~~~~li~~~l~ 279 (320)
T 3a99_A 250 EHDE-------EIIRG------------QVFFR-------------------------------QRVSSECQHLIRWCLA 279 (320)
T ss_dssp CSHH-------HHHHC------------CCCCS-------------------------------SCCCHHHHHHHHHHTC
T ss_pred CChh-------hhhcc------------ccccc-------------------------------ccCCHHHHHHHHHHcc
Confidence 5421 00000 00000 0114567889999999
Q ss_pred CCcCCCCCHHHHHH
Q 005045 687 TSPRERIAMNVVVN 700 (717)
Q Consensus 687 ~~p~~Rps~~eil~ 700 (717)
.+|++|||++||++
T Consensus 280 ~dp~~Rps~~~ll~ 293 (320)
T 3a99_A 280 LRPSDRPTFEEIQN 293 (320)
T ss_dssp SSGGGSCCHHHHHT
T ss_pred CChhhCcCHHHHhc
Confidence 99999999999986
No 282
>2rio_A Serine/threonine-protein kinase/endoribonuclease IRE1; protein-nucleotide complex, ATP-binding, endoplasmic reticulum, glycoprotein; HET: ADP; 2.40A {Saccharomyces cerevisiae} PDB: 3lj0_A* 3lj1_A* 3lj2_A* 3fbv_A* 3sdm_A* 3sdj_A*
Probab=100.00 E-value=5.3e-36 Score=324.66 Aligned_cols=266 Identities=21% Similarity=0.277 Sum_probs=183.9
Q ss_pred ccccccccc-ccccccccCcccccceEEEEeCCCchhhhHHhHhhhhhHHHHHHHHHHHHhcC-CCCceeEEEEeecccc
Q 005045 381 YSDISKSTD-NFSKENLIGTGSFGSVYKGTLGDGTIVAIKVLKLQQQGALKSFIDECNALKST-RHRNILRVITACSSVD 458 (717)
Q Consensus 381 ~~~~~~~~~-~y~~~~~ig~g~~g~v~~~~~~~~~~vavK~~~~~~~~~~~~~~~e~~~l~~l-~h~ni~~~~~~~~~~~ 458 (717)
+.++....+ .|.+.+.||+|+||.||.+...+|+.||||++.... .+.+.+|+++++++ +||||+++++.+
T Consensus 6 ~p~~~~~l~~~~~~~~~LG~G~~g~V~~~~~~~g~~vAvK~~~~~~---~~~~~~E~~~l~~l~~HpnIv~~~~~~---- 78 (434)
T 2rio_A 6 IPNFEQSLKNLVVSEKILGYGSSGTVVFQGSFQGRPVAVKRMLIDF---CDIALMEIKLLTESDDHPNVIRYYCSE---- 78 (434)
T ss_dssp --CCSCSCSSCEEEEEEEEECSTTCEEEEEESSSSEEEEEEEEGGG---HHHHHHHHHHHHHHTTSTTBCCEEEEE----
T ss_pred ccchhhhhhheeeccCeEeeCCCeEEEEEEEECCeEEEEEEEcHHH---HHHHHHHHHHHHhccCCCCcCeEEEEE----
Confidence 334444444 455568899999999987766689999999886432 34567899999876 899999999884
Q ss_pred CCCCceEEEEEecCCCCChhhhccCCCCCcccccccCHHHHHHHHHHHHHHHHHHHhcCCCCeeecCCCCCCEEeCCC--
Q 005045 459 LEGNDFKALVFEFMSNGNLDQWLHPSPAEHYQFKKLSVIQRLNIAIDVASALDYLHHHCDTPIAHCDLKPSNVLLDKD-- 536 (717)
Q Consensus 459 ~~~~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~dlkp~NIll~~~-- 536 (717)
.+.+..++||||+. ++|.+++.............++..+..++.||+.||+|||+. +|+||||||+||+++.+
T Consensus 79 -~~~~~~~lv~E~~~-gsL~~~l~~~~~~~~~~~~~~~~~~~~i~~qi~~aL~~LH~~---~ivHrDLkp~NILl~~~~~ 153 (434)
T 2rio_A 79 -TTDRFLYIALELCN-LNLQDLVESKNVSDENLKLQKEYNPISLLRQIASGVAHLHSL---KIIHRDLKPQNILVSTSSR 153 (434)
T ss_dssp -ECSSEEEEEECCCS-EEHHHHHHTC------------CCHHHHHHHHHHHHHHHHHT---TEECCCCSGGGEEEECCHH
T ss_pred -ecCCeEEEEEecCC-CCHHHHHhccCCCchhhhhccchhHHHHHHHHHHHHHHHHHC---CccccCCChHhEEEecCcc
Confidence 44568999999995 699999976532111111123445678999999999999998 99999999999999754
Q ss_pred -----------CceEEeeeccchhcccccCCCCCCcceeecccccccccCCCccCC--------CCCcccchhhHHHHHH
Q 005045 537 -----------MTAHVGDFGLAKFLFEISDNPSKNQTVSIGLKGSIGYIPPEHMNG--------QVSILGDIYSYGILLL 597 (717)
Q Consensus 537 -----------~~~kl~Dfg~~~~~~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~--------~~~~~sDvwslG~vl~ 597 (717)
+.+||+|||.+........ ..........||+.|+|||++.+ .++.++|||||||++|
T Consensus 154 ~~~~~~~~~~~~~~kL~DFG~a~~~~~~~~---~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~~~~~~~DiwSlG~il~ 230 (434)
T 2rio_A 154 FTADQQTGAENLRILISDFGLCKKLDSGQS---SFRTNLNNPSGTSGWRAPELLEESNNLQTKRRLTRSIDIFSMGCVFY 230 (434)
T ss_dssp HHSCCTTCCCSCEEEECCCTTCEECCC-----------------CCTTSCHHHHSCCCTTSCCCCCCTHHHHHHHHHHHH
T ss_pred cccccccCCCceEEEEcccccceecCCCCc---cceeeecCCCCCCCccCHHHhccccccccccCcchhhhhHhHHHHHH
Confidence 4899999999987522111 00111234569999999999643 4789999999999999
Q ss_pred HHHh-CCCCCCCCCCCchhhhHHHHhcCChhhhhhcCCCCCCCCCCcHHHHHHHHHHHHHHhhhhhhhcchhhhHHHHHH
Q 005045 598 EMFT-GKRPTGDMFKDDFSIHMFVSMALPDHVMDILDPSMPLDEENDEEQIEEVIEEKEMMIHIDLEVNTKNKLEECFVS 676 (717)
Q Consensus 598 ellt-g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 676 (717)
||++ |..||........ .... .......... .....++..
T Consensus 231 ellt~g~~Pf~~~~~~~~---~i~~--------~~~~~~~~~~----------------------------~~~~~~~~~ 271 (434)
T 2rio_A 231 YILSKGKHPFGDKYSRES---NIIR--------GIFSLDEMKC----------------------------LHDRSLIAE 271 (434)
T ss_dssp HHHTTSCCTTCSTTTHHH---HHHH--------TCCCCCCCTT----------------------------CCCHHHHHH
T ss_pred HHHhCCCCCCCCchhhHH---HHhc--------CCCCcccccc----------------------------cccccchHH
Confidence 9999 9999965422211 0110 0000000000 011234667
Q ss_pred HHHHhhccCCCCcCCCCCHHHHHH
Q 005045 677 VLRIGLMCSTTSPRERIAMNVVVN 700 (717)
Q Consensus 677 l~~li~~cl~~~p~~Rps~~eil~ 700 (717)
+.+++.+||+.+|++|||+.||++
T Consensus 272 ~~~li~~~L~~dP~~Rps~~eil~ 295 (434)
T 2rio_A 272 ATDLISQMIDHDPLKRPTAMKVLR 295 (434)
T ss_dssp HHHHHHHHTCSSGGGSCCHHHHHT
T ss_pred HHHHHHHHhhCChhhCCCHHHHHh
Confidence 889999999999999999999985
No 283
>3aln_A Dual specificity mitogen-activated protein kinase; protein AMP-PNP complex, transferase; HET: ANP; 2.30A {Homo sapiens} PDB: 3alo_A*
Probab=100.00 E-value=3.1e-36 Score=314.84 Aligned_cols=263 Identities=21% Similarity=0.293 Sum_probs=177.8
Q ss_pred cccccccccccccccCcccccceEEEEeC-CCchhhhHHhHhhh-hhHHHHHHHHHH-HHhcCCCCceeEEEEeeccccC
Q 005045 383 DISKSTDNFSKENLIGTGSFGSVYKGTLG-DGTIVAIKVLKLQQ-QGALKSFIDECN-ALKSTRHRNILRVITACSSVDL 459 (717)
Q Consensus 383 ~~~~~~~~y~~~~~ig~g~~g~v~~~~~~-~~~~vavK~~~~~~-~~~~~~~~~e~~-~l~~l~h~ni~~~~~~~~~~~~ 459 (717)
.+....++|++.+.||+|+||.||+|.++ +|+.||+|++.... ......+..|+. +++.++||||+++++++.
T Consensus 16 ~~~~~~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~e~~~~~~~~~h~niv~~~~~~~---- 91 (327)
T 3aln_A 16 HWDFTAEDLKDLGEIGRGAYGSVNKMVHKPSGQIMAVKRIRSTVDEKEQKQLLMDLDVVMRSSDCPYIVQFYGALF---- 91 (327)
T ss_dssp EECCCSCSEEC-CEEEECSSEEEEEEEETTTTEEEEEEEEECCCCHHHHHHHHHHHHHHHSSCCCTTBCCEEEEEE----
T ss_pred hcccCHHHhhehheeccCCCEEEEEEEEcCCCCEEEEEEeecccCchHHHHHHHHHHHHHHcCCCCcEeeeeeEEE----
Confidence 34455789999999999999999999975 79999999986542 223344555555 777789999999999964
Q ss_pred CCCceEEEEEecCCCCChhhhccCCCCCcccccccCHHHHHHHHHHHHHHHHHHHhcCCCCeeecCCCCCCEEeCCCCce
Q 005045 460 EGNDFKALVFEFMSNGNLDQWLHPSPAEHYQFKKLSVIQRLNIAIDVASALDYLHHHCDTPIAHCDLKPSNVLLDKDMTA 539 (717)
Q Consensus 460 ~~~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~dlkp~NIll~~~~~~ 539 (717)
..+..++||||+++ +|.+++...... ....+++..+..++.|++.||.|||+. .+++||||||+||+++.++.+
T Consensus 92 -~~~~~~lv~e~~~~-~l~~~~~~~~~~--~~~~~~~~~~~~i~~~i~~~l~~lH~~--~~ivH~dlkp~NIll~~~~~~ 165 (327)
T 3aln_A 92 -REGDCWICMELMST-SFDKFYKYVYSV--LDDVIPEEILGKITLATVKALNHLKEN--LKIIHRDIKPSNILLDRSGNI 165 (327)
T ss_dssp -CSSEEEEEECCCSE-EHHHHHHHHHHT--TCCCCCHHHHHHHHHHHHHHHHHHHHH--HSCCCSCCCGGGEEEETTTEE
T ss_pred -eCCceEEEEeecCC-ChHHHHHHHHhh--hcccCcHHHHHHHHHHHHHHHHHHhcc--CCEeECCCCHHHEEEcCCCCE
Confidence 34589999999974 887776521000 015689999999999999999999995 289999999999999999999
Q ss_pred EEeeeccchhcccccCCCCCCcceeecccccccccCCCccC-----CCCCcccchhhHHHHHHHHHhCCCCCCCCCCCch
Q 005045 540 HVGDFGLAKFLFEISDNPSKNQTVSIGLKGSIGYIPPEHMN-----GQVSILGDIYSYGILLLEMFTGKRPTGDMFKDDF 614 (717)
Q Consensus 540 kl~Dfg~~~~~~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~-----~~~~~~sDvwslG~vl~elltg~~p~~~~~~~~~ 614 (717)
||+|||.+...... .......|++.|+|||++. +.++.++|||||||++|+|++|..||........
T Consensus 166 kl~Dfg~~~~~~~~--------~~~~~~~gt~~y~aPE~~~~~~~~~~~~~~~Di~slG~il~~l~~g~~pf~~~~~~~~ 237 (327)
T 3aln_A 166 KLCDFGISGQLVDS--------IAKTRDAGCRPYMAPERIDPSASRQGYDVRSDVWSLGITLYELATGRFPYPKWNSVFD 237 (327)
T ss_dssp EECCCSSSCC--------------------------------------CCSHHHHHHHHHHHHHHHHSCCCSSCC-----
T ss_pred EEccCCCceecccc--------cccccCCCCccccCceeeccccCcCCCCchhhHHHHHHHHHHHHHCCCCCCCcchHHH
Confidence 99999999765211 1122335899999999973 2478999999999999999999999976422111
Q ss_pred hhhHHHHhcCChhhhhhcCCCCCCCCCCcHHHHHHHHHHHHHHhhhhhhhcchhhhHHHHHHHHHHhhccCCCCcCCCCC
Q 005045 615 SIHMFVSMALPDHVMDILDPSMPLDEENDEEQIEEVIEEKEMMIHIDLEVNTKNKLEECFVSVLRIGLMCSTTSPRERIA 694 (717)
Q Consensus 615 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~cl~~~p~~Rps 694 (717)
. +..+.......... .....++..+.+++.+||+.+|++|||
T Consensus 238 ~------------~~~~~~~~~~~~~~--------------------------~~~~~~~~~l~~li~~~l~~dp~~Rps 279 (327)
T 3aln_A 238 Q------------LTQVVKGDPPQLSN--------------------------SEEREFSPSFINFVNLCLTKDESKRPK 279 (327)
T ss_dssp --------------CCCCCSCCCCCCC--------------------------CSSCCCCHHHHHHHHHHTCSSGGGSCC
T ss_pred H------------HHHHhcCCCCCCCC--------------------------cccccCCHHHHHHHHHHhhCChhhCcC
Confidence 0 00111100000000 000112556889999999999999999
Q ss_pred HHHHHHH
Q 005045 695 MNVVVNN 701 (717)
Q Consensus 695 ~~eil~~ 701 (717)
+.|+++.
T Consensus 280 ~~ell~h 286 (327)
T 3aln_A 280 YKELLKH 286 (327)
T ss_dssp HHHHTTS
T ss_pred HHHHHhC
Confidence 9999863
No 284
>2dyl_A Dual specificity mitogen-activated protein kinase kinase 7; MKK7, activated mutant, ATP-binding, structural genomics, NPPSFA; 2.45A {Homo sapiens}
Probab=100.00 E-value=7.4e-36 Score=310.78 Aligned_cols=257 Identities=22% Similarity=0.306 Sum_probs=181.8
Q ss_pred ccccccccccccccccCcccccceEEEEeC-CCchhhhHHhHhhh--hhHHHHHHHHHHHHhcCCCCceeEEEEeecccc
Q 005045 382 SDISKSTDNFSKENLIGTGSFGSVYKGTLG-DGTIVAIKVLKLQQ--QGALKSFIDECNALKSTRHRNILRVITACSSVD 458 (717)
Q Consensus 382 ~~~~~~~~~y~~~~~ig~g~~g~v~~~~~~-~~~~vavK~~~~~~--~~~~~~~~~e~~~l~~l~h~ni~~~~~~~~~~~ 458 (717)
.......++|++.+.||+|+||.||+|.++ +|+.||+|++.... ....+.+.++..+++.++||||+++++++.
T Consensus 18 ~~~~~~~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~~~~~~~~~h~~i~~~~~~~~--- 94 (318)
T 2dyl_A 18 QRYQAEINDLENLGEMGSGTCGQVWKMRFRKTGHVIAVKQMRRSGNKEENKRILMDLDVVLKSHDCPYIVQCFGTFI--- 94 (318)
T ss_dssp SEEECCGGGEEEEEEC------CEEEEEETTTCCEEEEEEEETTSCHHHHHHHHHHHHHHHHTTTCTTBCCEEEEEE---
T ss_pred hhhhhhhccccccceeeecCCeeEEEEEEecCCeEEEEEEecccccchHHHHHHHHHHHHHHhcCCCceeeEEEEEe---
Confidence 344566789999999999999999999975 79999999986542 223344555666788889999999999954
Q ss_pred CCCCceEEEEEecCCCCChhhhccCCCCCcccccccCHHHHHHHHHHHHHHHHHHHh-cCCCCeeecCCCCCCEEeCCCC
Q 005045 459 LEGNDFKALVFEFMSNGNLDQWLHPSPAEHYQFKKLSVIQRLNIAIDVASALDYLHH-HCDTPIAHCDLKPSNVLLDKDM 537 (717)
Q Consensus 459 ~~~~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~i~~~i~~~l~~LH~-~~~~~ivH~dlkp~NIll~~~~ 537 (717)
..+..++||||+ ++.+..+..... ..+++..+..++.||+.||+|||+ . +++||||||+||+++.++
T Consensus 95 --~~~~~~lv~e~~-~~~~~~l~~~~~------~~~~~~~~~~~~~~i~~~l~~lH~~~---~i~H~dlkp~Nil~~~~~ 162 (318)
T 2dyl_A 95 --TNTDVFIAMELM-GTCAEKLKKRMQ------GPIPERILGKMTVAIVKALYYLKEKH---GVIHRDVKPSNILLDERG 162 (318)
T ss_dssp --CSSEEEEEECCC-SEEHHHHHHHHT------SCCCHHHHHHHHHHHHHHHHHHHHHH---CCCCCCCCGGGEEECTTS
T ss_pred --cCCcEEEEEecc-CCcHHHHHHHhc------cCCCHHHHHHHHHHHHHHHHHHHhhC---CEEeCCCCHHHEEECCCC
Confidence 345899999999 555655544211 568999999999999999999998 4 899999999999999999
Q ss_pred ceEEeeeccchhcccccCCCCCCcceeecccccccccCCCccC------CCCCcccchhhHHHHHHHHHhCCCCCCCCCC
Q 005045 538 TAHVGDFGLAKFLFEISDNPSKNQTVSIGLKGSIGYIPPEHMN------GQVSILGDIYSYGILLLEMFTGKRPTGDMFK 611 (717)
Q Consensus 538 ~~kl~Dfg~~~~~~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~------~~~~~~sDvwslG~vl~elltg~~p~~~~~~ 611 (717)
.+||+|||.+...... .......+++.|+|||++. +.++.++|||||||++|+|++|..||.....
T Consensus 163 ~~kl~dfg~~~~~~~~--------~~~~~~~~~~~y~aPE~~~~~~~~~~~~~~~~Di~slG~il~~l~~g~~pf~~~~~ 234 (318)
T 2dyl_A 163 QIKLCDFGISGRLVDD--------KAKDRSAGCAAYMAPERIDPPDPTKPDYDIRADVWSLGISLVELATGQFPYKNCKT 234 (318)
T ss_dssp CEEECCCTTC----------------------CCTTCCHHHHC--------CCTHHHHHHHHHHHHHHHHSSCTTTTCCS
T ss_pred CEEEEECCCchhccCC--------ccccccCCCccccChhhcccccccccCCccccchhhHHHHHHHHHhCCCCCCCCCc
Confidence 9999999998765211 1122346899999999973 2478999999999999999999999975422
Q ss_pred CchhhhHHHHhcCChhhhhhcCCCCCCCCCCcHHHHHHHHHHHHHHhhhhhhhcchhhhHHHHHHHHHHhhccCCCCcCC
Q 005045 612 DDFSIHMFVSMALPDHVMDILDPSMPLDEENDEEQIEEVIEEKEMMIHIDLEVNTKNKLEECFVSVLRIGLMCSTTSPRE 691 (717)
Q Consensus 612 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~cl~~~p~~ 691 (717)
........... . .+..+. ...++..+.+++.+||+.+|++
T Consensus 235 ~~~~~~~~~~~-~--------~~~~~~-------------------------------~~~~~~~l~~li~~~l~~dp~~ 274 (318)
T 2dyl_A 235 DFEVLTKVLQE-E--------PPLLPG-------------------------------HMGFSGDFQSFVKDCLTKDHRK 274 (318)
T ss_dssp HHHHHHHHHHS-C--------CCCCCS-------------------------------SSCCCHHHHHHHHHHTCSCTTT
T ss_pred cHHHHHHHhcc-C--------CCCCCc-------------------------------cCCCCHHHHHHHHHHccCChhH
Confidence 21111111110 0 000100 0112456789999999999999
Q ss_pred CCCHHHHHHH
Q 005045 692 RIAMNVVVNN 701 (717)
Q Consensus 692 Rps~~eil~~ 701 (717)
|||++|+++.
T Consensus 275 Rps~~~ll~h 284 (318)
T 2dyl_A 275 RPKYNKLLEH 284 (318)
T ss_dssp SCCHHHHTTS
T ss_pred CcCHHHHhhC
Confidence 9999999863
No 285
>3qa8_A MGC80376 protein; kinase ubiquitin-like domain, phosphorylation, kinase domain ubiquitin-like domain, kinase, substrate binding; 3.60A {Xenopus laevis} PDB: 3qad_A* 3rzf_A*
Probab=100.00 E-value=1.1e-35 Score=330.19 Aligned_cols=281 Identities=23% Similarity=0.291 Sum_probs=199.2
Q ss_pred ccccccccccccCcccccceEEEEeC-CCchhhhHHhHhh-hhhHHHHHHHHHHHHhcCCCCceeEEEEeecccc-CCCC
Q 005045 386 KSTDNFSKENLIGTGSFGSVYKGTLG-DGTIVAIKVLKLQ-QQGALKSFIDECNALKSTRHRNILRVITACSSVD-LEGN 462 (717)
Q Consensus 386 ~~~~~y~~~~~ig~g~~g~v~~~~~~-~~~~vavK~~~~~-~~~~~~~~~~e~~~l~~l~h~ni~~~~~~~~~~~-~~~~ 462 (717)
...++|++.+.||+|+||.||+|.+. +|+.||+|++... .......+.+|++++++++||||+++++++.... ....
T Consensus 11 ~~~grY~i~~~LG~G~fG~Vyla~~~~tg~~VAVKvi~~~~~~~~~~~~~~Ei~iL~~L~HpnIV~l~~v~~~~~~~~~~ 90 (676)
T 3qa8_A 11 QTCGPWEMKERLGTGGFGYVLRWIHQDTGEQVAIKQCRQELSPKNRERWCLEIQIMKKLNHPNVVSAREVPDGLQKLAPN 90 (676)
T ss_dssp ------CCCCCCCBCSSSBCCCCCCTTTTCCEEECCCCSCCCHHHHHHHHHHHHHHHHCCBTTBCCEEECCTTTCCCCTT
T ss_pred CCCCCeEEEEEEeeCCCeEEEEEEECCCCcEEEEEEecccCCHHHHHHHHHHHHHHHhCCCCCCCceeeeecccccccCC
Confidence 44579999999999999999999964 7999999998653 3445677899999999999999999999865422 2336
Q ss_pred ceEEEEEecCCCCChhhhccCCCCCcccccccCHHHHHHHHHHHHHHHHHHHhcCCCCeeecCCCCCCEEeCCCCc---e
Q 005045 463 DFKALVFEFMSNGNLDQWLHPSPAEHYQFKKLSVIQRLNIAIDVASALDYLHHHCDTPIAHCDLKPSNVLLDKDMT---A 539 (717)
Q Consensus 463 ~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~dlkp~NIll~~~~~---~ 539 (717)
+..++||||+++++|.+++..... ...+++..+..++.||+.||+|||+. ||+||||||+||+++.++. +
T Consensus 91 ~~~~LVmEy~~ggsL~~~L~~~~~----~~~lse~~i~~I~~QLl~aL~yLHs~---gIVHrDLKP~NILl~~~g~~~~v 163 (676)
T 3qa8_A 91 DLPLLAMEYCEGGDLRKYLNQFEN----CCGLKEGPIRTLLSDISSALRYLHEN---RIIHRDLKPENIVLQPGPQRLIH 163 (676)
T ss_dssp SSCCCEEECCSSCBHHHHHHSSSC----TTCCCSSHHHHHHHHHHHHHHHHHHT---TBCCCCCCSTTEEEECCSSSCEE
T ss_pred CeEEEEEEeCCCCCHHHHHHhccc----CCCCCHHHHHHHHHHHHHHHHHHHHC---CCccCCCCHHHeEeecCCCceeE
Confidence 678999999999999999976431 13588889999999999999999998 9999999999999997764 9
Q ss_pred EEeeeccchhcccccCCCCCCcceeecccccccccCCCccCC-CCCcccchhhHHHHHHHHHhCCCCCCCCCCCchhhhH
Q 005045 540 HVGDFGLAKFLFEISDNPSKNQTVSIGLKGSIGYIPPEHMNG-QVSILGDIYSYGILLLEMFTGKRPTGDMFKDDFSIHM 618 (717)
Q Consensus 540 kl~Dfg~~~~~~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~-~~~~~sDvwslG~vl~elltg~~p~~~~~~~~~~~~~ 618 (717)
||+|||.+...... .......|++.|+|||++.+ .++.++|||||||++|+|++|..||...... ..
T Consensus 164 KL~DFG~a~~~~~~--------~~~~~~~gt~~Y~APE~l~~~~~s~ksDIwSLGviLyeLltG~~Pf~~~~~~----~~ 231 (676)
T 3qa8_A 164 KIIDLGYAKELDQG--------ELCTEFVGTLQYLAPELLEQKKYTVTVDYWSFGTLAFECITGFRPFLPNWQP----VQ 231 (676)
T ss_dssp EECSCCCCCBTTSC--------CCCCCCCSCCTTCSSCSSCCSCCSTTHHHHHHHHHHHHHHSSCSSCCSSCHH----HH
T ss_pred EEcccccccccccc--------cccccccCCcccCChHHhccCCCCchhHHHHHHHHHHHHHHCCCCCCcccch----hh
Confidence 99999999865211 11233568999999999765 5899999999999999999999999653111 11
Q ss_pred HHHhcCChh-----hhhhcCCCCCCCCCCcHHHHHHHHHHHHHHhhhhhhhcchhhhHHHHHHHHHHhhccCCCCcCCCC
Q 005045 619 FVSMALPDH-----VMDILDPSMPLDEENDEEQIEEVIEEKEMMIHIDLEVNTKNKLEECFVSVLRIGLMCSTTSPRERI 693 (717)
Q Consensus 619 ~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~cl~~~p~~Rp 693 (717)
+........ ..+............ ..........+..+.+++.+||++||++||
T Consensus 232 ~~~~i~~~~~~~~~~~~~l~g~~~~~~~l---------------------p~p~~l~~~ls~~L~dLI~~mL~~DP~kRP 290 (676)
T 3qa8_A 232 WHGKVREKSNEHIVVYDDLTGAVKFSSVL---------------------PTPNHLSGILAGKLERWLQCMLMWHQRQRG 290 (676)
T ss_dssp SSTTCC------CCSCCCCSSSCCCCSSS---------------------CCSCCCCGGGHHHHHHHHHHHSCSSCC---
T ss_pred hhhhhhcccchhhhhhhhhcccccccccc---------------------CCchhhchhhhHHHHHHHHHHccCCHhhCc
Confidence 100000000 000000000000000 000011223467789999999999999999
Q ss_pred CHHH-----HHHHHHHHH
Q 005045 694 AMNV-----VVNNLKTIR 706 (717)
Q Consensus 694 s~~e-----il~~l~~i~ 706 (717)
|++| +.+.++.+.
T Consensus 291 Ta~elL~hp~F~~l~~iL 308 (676)
T 3qa8_A 291 TDPQNPNVGCFQALDSIL 308 (676)
T ss_dssp CCTTCCCCTTHHHHHHHH
T ss_pred CHHHHhcCHHHHHHHHHH
Confidence 9988 455555554
No 286
>2iwi_A Serine/threonine-protein kinase PIM-2; nucleotide-binding, cancer, leukemia, transferase, ATP-binding, proto- oncogene, phosphorylation; HET: HB1; 2.80A {Homo sapiens}
Probab=100.00 E-value=2e-36 Score=314.14 Aligned_cols=244 Identities=23% Similarity=0.320 Sum_probs=186.0
Q ss_pred cccccccccccccccCcccccceEEEEeC-CCchhhhHHhHhhhh------hHHHHHHHHHHHHhcC----CCCceeEEE
Q 005045 383 DISKSTDNFSKENLIGTGSFGSVYKGTLG-DGTIVAIKVLKLQQQ------GALKSFIDECNALKST----RHRNILRVI 451 (717)
Q Consensus 383 ~~~~~~~~y~~~~~ig~g~~g~v~~~~~~-~~~~vavK~~~~~~~------~~~~~~~~e~~~l~~l----~h~ni~~~~ 451 (717)
+.....++|++.+.||+|+||.||+|++. +++.||+|++..... .....+.+|+.+++++ +||||++++
T Consensus 25 ~~~~~~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~~~~e~~~l~~l~~~~~h~~i~~~~ 104 (312)
T 2iwi_A 25 DREAFEAEYRLGPLLGKGGFGTVFAGHRLTDRLQVAIKVIPRNRVLGWSPLSDSVTCPLEVALLWKVGAGGGHPGVIRLL 104 (312)
T ss_dssp --------CEEEEEEEEETTEEEEEEECTTTCCEEEEEECCSTTTC--------CCCCHHHHHHHHHHSSCCCSSBCCEE
T ss_pred chhhhhhceEEeeEEEcCCCEEEEEEEEccCCeEEEEEEEecccccccccchhhHHHHHHHHHHHhhcccCCCCCeeeEE
Confidence 44556789999999999999999999964 788999999864421 1234456788988888 899999999
Q ss_pred EeeccccCCCCceEEEEEec-CCCCChhhhccCCCCCcccccccCHHHHHHHHHHHHHHHHHHHhcCCCCeeecCCCCCC
Q 005045 452 TACSSVDLEGNDFKALVFEF-MSNGNLDQWLHPSPAEHYQFKKLSVIQRLNIAIDVASALDYLHHHCDTPIAHCDLKPSN 530 (717)
Q Consensus 452 ~~~~~~~~~~~~~~~lv~e~-~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~dlkp~N 530 (717)
+++ ...+..++|||+ +.+++|.+++... ..+++..+..++.||+.||+|||+. +|+||||||+|
T Consensus 105 ~~~-----~~~~~~~~v~e~~~~~~~L~~~l~~~-------~~~~~~~~~~~~~qi~~~l~~lH~~---~i~H~dlkp~N 169 (312)
T 2iwi_A 105 DWF-----ETQEGFMLVLERPLPAQDLFDYITEK-------GPLGEGPSRCFFGQVVAAIQHCHSR---GVVHRDIKDEN 169 (312)
T ss_dssp EEC----------CEEEEECCSSEEEHHHHHHHH-------CSCCHHHHHHHHHHHHHHHHHHHHH---TEECCCCSGGG
T ss_pred EEE-----ecCCeEEEEEEecCCCCCHHHHHHhc-------CCCCHHHHHHHHHHHHHHHHHHHHC---CeeecCCChhh
Confidence 984 445578999999 7899999999753 4689999999999999999999998 99999999999
Q ss_pred EEeC-CCCceEEeeeccchhcccccCCCCCCcceeecccccccccCCCccCC-CC-CcccchhhHHHHHHHHHhCCCCCC
Q 005045 531 VLLD-KDMTAHVGDFGLAKFLFEISDNPSKNQTVSIGLKGSIGYIPPEHMNG-QV-SILGDIYSYGILLLEMFTGKRPTG 607 (717)
Q Consensus 531 Ill~-~~~~~kl~Dfg~~~~~~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~-~~-~~~sDvwslG~vl~elltg~~p~~ 607 (717)
|+++ .++.+||+|||.+..... .......|+..|+|||++.+ .+ +.++|||||||++|+|++|..||.
T Consensus 170 il~~~~~~~~kl~dfg~~~~~~~---------~~~~~~~~~~~y~aPE~~~~~~~~~~~~Di~slG~il~~l~~g~~pf~ 240 (312)
T 2iwi_A 170 ILIDLRRGCAKLIDFGSGALLHD---------EPYTDFDGTRVYSPPEWISRHQYHALPATVWSLGILLYDMVCGDIPFE 240 (312)
T ss_dssp EEEETTTTEEEECCCSSCEECCS---------SCBCCCCSCTTTSCHHHHHHSCBCHHHHHHHHHHHHHHHHHHSSCSCC
T ss_pred EEEeCCCCeEEEEEcchhhhccc---------CcccccCCcccccCceeeecCCCCCccchHHHHHHHHHHHHHCCCCCC
Confidence 9999 889999999999886521 11233558999999999644 33 568999999999999999999995
Q ss_pred CCCCCchhhhHHHHhcCChhhhhhcCCCCCCCCCCcHHHHHHHHHHHHHHhhhhhhhcchhhhHHHHHHHHHHhhccCCC
Q 005045 608 DMFKDDFSIHMFVSMALPDHVMDILDPSMPLDEENDEEQIEEVIEEKEMMIHIDLEVNTKNKLEECFVSVLRIGLMCSTT 687 (717)
Q Consensus 608 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~cl~~ 687 (717)
... ... ...... +..++..+.+++.+||+.
T Consensus 241 ~~~-------~~~------------~~~~~~-------------------------------~~~~~~~~~~li~~~l~~ 270 (312)
T 2iwi_A 241 RDQ-------EIL------------EAELHF-------------------------------PAHVSPDCCALIRRCLAP 270 (312)
T ss_dssp SHH-------HHH------------HTCCCC-------------------------------CTTSCHHHHHHHHHHTCS
T ss_pred ChH-------HHh------------hhccCC-------------------------------cccCCHHHHHHHHHHccC
Confidence 420 000 000000 011245678899999999
Q ss_pred CcCCCCCHHHHHH
Q 005045 688 SPRERIAMNVVVN 700 (717)
Q Consensus 688 ~p~~Rps~~eil~ 700 (717)
+|++|||++|+++
T Consensus 271 ~p~~Rps~~e~l~ 283 (312)
T 2iwi_A 271 KPSSRPSLEEILL 283 (312)
T ss_dssp STTTSCCHHHHHH
T ss_pred ChhhCcCHHHHhc
Confidence 9999999999987
No 287
>3uqc_A Probable conserved transmembrane protein; structural genomics, TB structural genomics consortium, TBSG fold, FHAA, transferase; 2.26A {Mycobacterium tuberculosis} PDB: 3oun_B* 3otv_A 3ouk_A
Probab=100.00 E-value=1.7e-35 Score=302.13 Aligned_cols=235 Identities=13% Similarity=0.081 Sum_probs=183.9
Q ss_pred cccccccccccCcccccceEEEEeC-CCchhhhHHhHhhh---hhHHHHHHHHHHHHhcCCCCceeEEEEeeccccCCCC
Q 005045 387 STDNFSKENLIGTGSFGSVYKGTLG-DGTIVAIKVLKLQQ---QGALKSFIDECNALKSTRHRNILRVITACSSVDLEGN 462 (717)
Q Consensus 387 ~~~~y~~~~~ig~g~~g~v~~~~~~-~~~~vavK~~~~~~---~~~~~~~~~e~~~l~~l~h~ni~~~~~~~~~~~~~~~ 462 (717)
..++|++.+.||+|+||.||+|.+. +++.||+|++.... ....+.+.+|+.++++++||||+++++++. ..
T Consensus 29 ~~~~y~i~~~lg~G~~g~Vy~a~~~~~~~~vavK~~~~~~~~~~~~~~~~~~e~~~l~~l~hp~iv~~~~~~~-----~~ 103 (286)
T 3uqc_A 29 ANGRYRLLIFHGGVPPLQFWQALDTALDRQVALTFVDPQGVLPDDVLQETLSRTLRLSRIDKPGVARVLDVVH-----TR 103 (286)
T ss_dssp TTTTEEEEEEEEBSTTCEEEEEEETTTTEEEEEEESCTTCCSCHHHHHHHHHHHHHHHTCCCTTBCCEEEEEE-----ET
T ss_pred ecCcEEEEEEEcccCCeEEEEEEecCCCceEEEEEECcccccCHHHHHHHHHHHHHHhcCCCCCcceeeEEEE-----EC
Confidence 4578999999999999999999975 69999999997542 344578899999999999999999999954 34
Q ss_pred ceEEEEEecCCCCChhhhccCCCCCcccccccCHHHHHHHHHHHHHHHHHHHhcCCCCeeecCCCCCCEEeCCCCceEEe
Q 005045 463 DFKALVFEFMSNGNLDQWLHPSPAEHYQFKKLSVIQRLNIAIDVASALDYLHHHCDTPIAHCDLKPSNVLLDKDMTAHVG 542 (717)
Q Consensus 463 ~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~dlkp~NIll~~~~~~kl~ 542 (717)
+..|+||||++|++|.++++.. ....++..++.||+.||+|||+. ||+||||||+||+++.+|.+||+
T Consensus 104 ~~~~lv~e~~~g~~L~~~l~~~---------~~~~~~~~i~~ql~~aL~~lH~~---givH~Dikp~NIll~~~g~~kl~ 171 (286)
T 3uqc_A 104 AGGLVVAEWIRGGSLQEVADTS---------PSPVGAIRAMQSLAAAADAAHRA---GVALSIDHPSRVRVSIDGDVVLA 171 (286)
T ss_dssp TEEEEEEECCCEEEHHHHHTTC---------CCHHHHHHHHHHHHHHHHHHHHT---TCCCCCCSGGGEEEETTSCEEEC
T ss_pred CcEEEEEEecCCCCHHHHHhcC---------CChHHHHHHHHHHHHHHHHHHHC---CCccCCCCcccEEEcCCCCEEEE
Confidence 5899999999999999999632 35557889999999999999998 99999999999999999999998
Q ss_pred eeccchhcccccCCCCCCcceeecccccccccCCCccCCCCCcccchhhHHHHHHHHHhCCCCCCCCCCCchhhhHHHHh
Q 005045 543 DFGLAKFLFEISDNPSKNQTVSIGLKGSIGYIPPEHMNGQVSILGDIYSYGILLLEMFTGKRPTGDMFKDDFSIHMFVSM 622 (717)
Q Consensus 543 Dfg~~~~~~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~sDvwslG~vl~elltg~~p~~~~~~~~~~~~~~~~~ 622 (717)
+++ |++ .++.++|||||||++|+|++|+.||...........
T Consensus 172 ~~~---------------------------~~~------~~~~~~Di~slG~il~elltg~~Pf~~~~~~~~~~~----- 213 (286)
T 3uqc_A 172 YPA---------------------------TMP------DANPQDDIRGIGASLYALLVNRWPLPEAGVRSGLAP----- 213 (286)
T ss_dssp SCC---------------------------CCT------TCCHHHHHHHHHHHHHHHHHSEECSCCCSBCCCSEE-----
T ss_pred ecc---------------------------ccC------CCCchhHHHHHHHHHHHHHHCCCCCCcCCcchhhHH-----
Confidence 543 222 257899999999999999999999986543221000
Q ss_pred cCChhhhhhcCCCCCCCCCCcHHHHHHHHHHHHHHhhhhhhhcchhhhHHHHHHHHHHhhccCCCCcCCCCCHHHHHHHH
Q 005045 623 ALPDHVMDILDPSMPLDEENDEEQIEEVIEEKEMMIHIDLEVNTKNKLEECFVSVLRIGLMCSTTSPRERIAMNVVVNNL 702 (717)
Q Consensus 623 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~cl~~~p~~Rps~~eil~~l 702 (717)
....+..... . . .....+++..+.+++.+||+.||++| |+.|+++.|
T Consensus 214 -----~~~~~~~~~~-~----~----------------------~~~~~~~~~~l~~li~~~l~~dP~~R-s~~el~~~L 260 (286)
T 3uqc_A 214 -----AERDTAGQPI-E----P----------------------ADIDRDIPFQISAVAARSVQGDGGIR-SASTLLNLM 260 (286)
T ss_dssp -----CCBCTTSCBC-C----H----------------------HHHCTTSCHHHHHHHHHHHCTTSSCC-CHHHHHHHH
T ss_pred -----HHHHhccCCC-C----h----------------------hhcccCCCHHHHHHHHHHcccCCccC-CHHHHHHHH
Confidence 0000000000 0 0 00112235678899999999999999 999999999
Q ss_pred HHHHHHH
Q 005045 703 KTIRNCF 709 (717)
Q Consensus 703 ~~i~~~~ 709 (717)
+++....
T Consensus 261 ~~~~~~~ 267 (286)
T 3uqc_A 261 QQATAVA 267 (286)
T ss_dssp HHHHC--
T ss_pred HHHhccC
Confidence 9987543
No 288
>2eu9_A Dual specificity protein kinase CLK3; kinase domain, transferase; 1.53A {Homo sapiens} PDB: 2wu6_A* 2wu7_A* 3raw_A* 2exe_A 3nr9_A*
Probab=100.00 E-value=8.3e-36 Score=315.49 Aligned_cols=283 Identities=20% Similarity=0.263 Sum_probs=198.7
Q ss_pred cccccccccccccCcccccceEEEEeC-CC-chhhhHHhHhhhhhHHHHHHHHHHHHhcCCCCc------eeEEEEeecc
Q 005045 385 SKSTDNFSKENLIGTGSFGSVYKGTLG-DG-TIVAIKVLKLQQQGALKSFIDECNALKSTRHRN------ILRVITACSS 456 (717)
Q Consensus 385 ~~~~~~y~~~~~ig~g~~g~v~~~~~~-~~-~~vavK~~~~~~~~~~~~~~~e~~~l~~l~h~n------i~~~~~~~~~ 456 (717)
....++|++.+.||+|+||.||+|.+. ++ +.||+|++.... .....+.+|+++++++.|++ ++.+++++
T Consensus 15 ~~~~~~y~~~~~lg~G~~g~V~~~~~~~~~~~~vavK~~~~~~-~~~~~~~~E~~~l~~l~~~~~~~~~~~~~~~~~~-- 91 (355)
T 2eu9_A 15 DWLQERYEIVGNLGEGTFGKVVECLDHARGKSQVALKIIRNVG-KYREAARLEINVLKKIKEKDKENKFLCVLMSDWF-- 91 (355)
T ss_dssp CEETTTEEEEEEEEEETTEEEEEEEETTTTTEEEEEEEECSCH-HHHHHHHHHHHHHHHHHHHCTTSCSCBCCEEEEE--
T ss_pred ceecccEEEEEEeeccCCeEEEEEEecCCCceEEEEEEEcccc-cchhHHHHHHHHHHHHhhcCCCCceeEEEeeeee--
Confidence 344689999999999999999999964 44 689999986432 33467788999999887665 88888874
Q ss_pred ccCCCCceEEEEEecCCCCChhhhccCCCCCcccccccCHHHHHHHHHHHHHHHHHHHhcCCCCeeecCCCCCCEEe---
Q 005045 457 VDLEGNDFKALVFEFMSNGNLDQWLHPSPAEHYQFKKLSVIQRLNIAIDVASALDYLHHHCDTPIAHCDLKPSNVLL--- 533 (717)
Q Consensus 457 ~~~~~~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~dlkp~NIll--- 533 (717)
...+..++||||+ ++++.+++..... ..+++..+..++.||+.||+|||+. +|+||||||+||++
T Consensus 92 ---~~~~~~~lv~e~~-~~~l~~~l~~~~~-----~~~~~~~~~~i~~qi~~~L~~lH~~---~ivH~Dlkp~NIll~~~ 159 (355)
T 2eu9_A 92 ---NFHGHMCIAFELL-GKNTFEFLKENNF-----QPYPLPHVRHMAYQLCHALRFLHEN---QLTHTDLKPENILFVNS 159 (355)
T ss_dssp ---EETTEEEEEEECC-CCBHHHHHHHTTT-----CCCCHHHHHHHHHHHHHHHHHHHTT---TEECCCCCGGGEEESCC
T ss_pred ---eeCCeEEEEEecc-CCChHHHHHhccC-----CCCCHHHHHHHHHHHHHHHHHHHHC---CcccCCCCHHHEEEecc
Confidence 3445899999999 6677777654321 4689999999999999999999997 99999999999999
Q ss_pred ----------------CCCCceEEeeeccchhcccccCCCCCCcceeecccccccccCCCccCC-CCCcccchhhHHHHH
Q 005045 534 ----------------DKDMTAHVGDFGLAKFLFEISDNPSKNQTVSIGLKGSIGYIPPEHMNG-QVSILGDIYSYGILL 596 (717)
Q Consensus 534 ----------------~~~~~~kl~Dfg~~~~~~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~-~~~~~sDvwslG~vl 596 (717)
+.++.+||+|||.+..... ......||+.|+|||++.+ .++.++|||||||++
T Consensus 160 ~~~~~~~~~~~~~~~~~~~~~~kl~Dfg~~~~~~~----------~~~~~~gt~~y~aPE~~~~~~~~~~~Di~slG~il 229 (355)
T 2eu9_A 160 EFETLYNEHKSCEEKSVKNTSIRVADFGSATFDHE----------HHTTIVATRHYRPPEVILELGWAQPCDVWSIGCIL 229 (355)
T ss_dssp CEEEEECCC-CCCEEEESCCCEEECCCTTCEETTS----------CCCSSCSCGGGCCHHHHTTCCCCTHHHHHHHHHHH
T ss_pred cccccccccccccccccCCCcEEEeecCccccccc----------cccCCcCCCcccCCeeeecCCCCCccchHHHHHHH
Confidence 5678999999999975411 1123568999999999654 589999999999999
Q ss_pred HHHHhCCCCCCCCCCCch-hhhHHHHhcCChhhhhhcC-------CCCCCCCCCcHHHHHHHHHHHHHHhhhhhhhcchh
Q 005045 597 LEMFTGKRPTGDMFKDDF-SIHMFVSMALPDHVMDILD-------PSMPLDEENDEEQIEEVIEEKEMMIHIDLEVNTKN 668 (717)
Q Consensus 597 ~elltg~~p~~~~~~~~~-~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 668 (717)
|+|++|..||........ .........+|..+..... ......... .......+.. ........
T Consensus 230 ~el~~g~~pf~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~-----~~~~~~~~ 301 (355)
T 2eu9_A 230 FEYYRGFTLFQTHENREHLVMMEKILGPIPSHMIHRTRKQKYFYKGGLVWDENS---SDGRYVKENC-----KPLKSYML 301 (355)
T ss_dssp HHHHHSSCSCCCSSHHHHHHHHHHHHCCCCHHHHHHCSCGGGEETTEECCCTTS---HHHHHHHHHC-----CCGGGGCS
T ss_pred HHHHhCCCCCCCCCHHHHHHHHHHHcCCCcHHHhhhccchhhhccccccccccc---chhccccccC-----Cccccccc
Confidence 999999999976533221 1111112223322211110 001111000 0000110000 00000111
Q ss_pred hhHHHHHHHHHHhhccCCCCcCCCCCHHHHHH
Q 005045 669 KLEECFVSVLRIGLMCSTTSPRERIAMNVVVN 700 (717)
Q Consensus 669 ~~~~~~~~l~~li~~cl~~~p~~Rps~~eil~ 700 (717)
....++..+.+++.+||+.||++|||++|+++
T Consensus 302 ~~~~~~~~l~~li~~~L~~dP~~Rpt~~e~l~ 333 (355)
T 2eu9_A 302 QDSLEHVQLFDLMRRMLEFDPAQRITLAEALL 333 (355)
T ss_dssp CCSHHHHHHHHHHHHHTCSSTTTSCCHHHHTT
T ss_pred ccchhHHHHHHHHHHHhcCChhhCcCHHHHhc
Confidence 22344668899999999999999999999984
No 289
>1q8y_A SR protein kinase; transferase; HET: ADP ADE; 2.05A {Saccharomyces cerevisiae} SCOP: d.144.1.7 PDB: 1q8z_A 1q97_A* 1q99_A* 1how_A 2jd5_A
Probab=100.00 E-value=1.1e-35 Score=316.89 Aligned_cols=279 Identities=21% Similarity=0.286 Sum_probs=197.2
Q ss_pred cccccccccccCcccccceEEEEeC-CCchhhhHHhHhhhhhHHHHHHHHHHHHhcCC-----------CCceeEEEEee
Q 005045 387 STDNFSKENLIGTGSFGSVYKGTLG-DGTIVAIKVLKLQQQGALKSFIDECNALKSTR-----------HRNILRVITAC 454 (717)
Q Consensus 387 ~~~~y~~~~~ig~g~~g~v~~~~~~-~~~~vavK~~~~~~~~~~~~~~~e~~~l~~l~-----------h~ni~~~~~~~ 454 (717)
..++|++.+.||+|+||.||+|++. +++.||+|++.... .....+.+|+++++++. |+||+++++++
T Consensus 17 ~~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~-~~~~~~~~e~~~l~~l~~~~~~~~~~~~~~~i~~~~~~~ 95 (373)
T 1q8y_A 17 KDARYILVRKLGWGHFSTVWLAKDMVNNTHVAMKIVRGDK-VYTEAAEDEIKLLQRVNDADNTKEDSMGANHILKLLDHF 95 (373)
T ss_dssp TTTTEEEEEEEEECSSEEEEEEEETTTTEEEEEEEECSCH-HHHHHHHHHHHHHHHHHHTCCSHHHHHHHTTBCCCCEEE
T ss_pred cCCeEEEEEeeeecCCeEEEEEEecCCCcEEEEEEecCCc-cchhhhhHHHHHHHHhhcccccchhccccchHHHHHHHh
Confidence 3568999999999999999999964 89999999986432 23466788999988875 89999999986
Q ss_pred ccccCCCCceEEEEEecCCCCChhhhccCCCCCcccccccCHHHHHHHHHHHHHHHHHHHhcCCCCeeecCCCCCCEEeC
Q 005045 455 SSVDLEGNDFKALVFEFMSNGNLDQWLHPSPAEHYQFKKLSVIQRLNIAIDVASALDYLHHHCDTPIAHCDLKPSNVLLD 534 (717)
Q Consensus 455 ~~~~~~~~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~dlkp~NIll~ 534 (717)
.... ......++|||++ +++|.+++..... ..+++..+..++.||+.||+|||+.+ +|+||||||+||+++
T Consensus 96 ~~~~-~~~~~~~lv~e~~-~~~L~~~~~~~~~-----~~~~~~~~~~i~~qi~~aL~~lH~~~--~ivH~Dikp~NIll~ 166 (373)
T 1q8y_A 96 NHKG-PNGVHVVMVFEVL-GENLLALIKKYEH-----RGIPLIYVKQISKQLLLGLDYMHRRC--GIIHTDIKPENVLME 166 (373)
T ss_dssp EEEE-TTEEEEEEEECCC-CEEHHHHHHHTTT-----SCCCHHHHHHHHHHHHHHHHHHHHTT--CEECSCCSGGGEEEE
T ss_pred hccC-CCCceEEEEEecC-CCCHHHHHHHhhc-----cCCcHHHHHHHHHHHHHHHHHHHhcC--CEEecCCChHHeEEe
Confidence 5432 2334789999999 8999999875421 45899999999999999999999942 899999999999994
Q ss_pred ------CCCceEEeeeccchhcccccCCCCCCcceeecccccccccCCCccCC-CCCcccchhhHHHHHHHHHhCCCCCC
Q 005045 535 ------KDMTAHVGDFGLAKFLFEISDNPSKNQTVSIGLKGSIGYIPPEHMNG-QVSILGDIYSYGILLLEMFTGKRPTG 607 (717)
Q Consensus 535 ------~~~~~kl~Dfg~~~~~~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~-~~~~~sDvwslG~vl~elltg~~p~~ 607 (717)
..+.+||+|||.+..... ......||+.|+|||++.+ .++.++|||||||++|+|++|..||.
T Consensus 167 ~~~~~~~~~~~kl~Dfg~a~~~~~----------~~~~~~~t~~y~aPE~~~~~~~~~~~Di~slG~il~el~~g~~pf~ 236 (373)
T 1q8y_A 167 IVDSPENLIQIKIADLGNACWYDE----------HYTNSIQTREYRSPEVLLGAPWGCGADIWSTACLIFELITGDFLFE 236 (373)
T ss_dssp EEETTTTEEEEEECCCTTCEETTB----------CCCSCCSCGGGCCHHHHHTCCCCTHHHHHHHHHHHHHHHHSSCCC-
T ss_pred ccCCCcCcceEEEcccccccccCC----------CCCCCCCCccccCcHHHhCCCCCchHhHHHHHHHHHHHHhCCCCCC
Confidence 445899999999976521 1123468999999999655 48999999999999999999999997
Q ss_pred CCCCCchh-----hhHHH--HhcCChhhh-------hhcCCC-----CCCCCCCcHHHHHHHHHHHHHHhhhhhhhcchh
Q 005045 608 DMFKDDFS-----IHMFV--SMALPDHVM-------DILDPS-----MPLDEENDEEQIEEVIEEKEMMIHIDLEVNTKN 668 (717)
Q Consensus 608 ~~~~~~~~-----~~~~~--~~~~~~~~~-------~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 668 (717)
........ ..... ...+|..+. .++... ........ ..++... ...
T Consensus 237 ~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~------------~~~ 301 (373)
T 1q8y_A 237 PDEGHSYTKDDDHIAQIIELLGELPSYLLRNGKYTRTFFNSRGLLRNISKLKFWP---LEDVLTE------------KYK 301 (373)
T ss_dssp --------CHHHHHHHHHHHHCSCCHHHHHHCTTHHHHBCC--CBSSCCCCCBCC---HHHHHHH------------TTC
T ss_pred CCcccccCChHHHHHHHHHhcCCCCHHHHhccchhhhhcCCcchhcccccccccc---hhhhhhh------------ccc
Confidence 65432111 11100 111121110 000000 00000000 0001000 111
Q ss_pred hhHHHHHHHHHHhhccCCCCcCCCCCHHHHHH
Q 005045 669 KLEECFVSVLRIGLMCSTTSPRERIAMNVVVN 700 (717)
Q Consensus 669 ~~~~~~~~l~~li~~cl~~~p~~Rps~~eil~ 700 (717)
.+..++..+.+++.+||+.||++|||++|+++
T Consensus 302 ~~~~~~~~~~~li~~~L~~dP~~Rpt~~ell~ 333 (373)
T 1q8y_A 302 FSKDEAKEISDFLSPMLQLDPRKRADAGGLVN 333 (373)
T ss_dssp CCHHHHHHHHHHHGGGGCSSTTTCBCHHHHHT
T ss_pred CCcchHHHHHHHHHHHhccCccccCCHHHHhh
Confidence 23556788999999999999999999999986
No 290
>3p23_A Serine/threonine-protein kinase/endoribonuclease; kinase domain, kinase and RNAse function, ATP binding ssRNA dephosphorylated, hydrolase; HET: ADP; 2.70A {Homo sapiens}
Probab=100.00 E-value=2.5e-35 Score=318.27 Aligned_cols=254 Identities=21% Similarity=0.309 Sum_probs=184.9
Q ss_pred cccccccccccccccCcccccceEEEEeCCCchhhhHHhHhhhhhHHHHHHHHHHHHhcC-CCCceeEEEEeeccccCCC
Q 005045 383 DISKSTDNFSKENLIGTGSFGSVYKGTLGDGTIVAIKVLKLQQQGALKSFIDECNALKST-RHRNILRVITACSSVDLEG 461 (717)
Q Consensus 383 ~~~~~~~~y~~~~~ig~g~~g~v~~~~~~~~~~vavK~~~~~~~~~~~~~~~e~~~l~~l-~h~ni~~~~~~~~~~~~~~ 461 (717)
.+.....+|.+.+.||+|+||.||.....+++.||||++..... ..+.+|+++++++ +||||+++++++. +
T Consensus 18 ~~~i~~~~y~~~~~LG~G~~G~V~~~~~~~~~~vAvK~~~~~~~---~~~~~E~~~l~~l~~HpnIv~l~~~~~-----~ 89 (432)
T 3p23_A 18 VVIVGKISFCPKDVLGHGAEGTIVYRGMFDNRDVAVKRILPECF---SFADREVQLLRESDEHPNVIRYFCTEK-----D 89 (432)
T ss_dssp CEEETTEEEEEEEEEEECGGGCEEEEEESSSSEEEEEEECTTTE---EECHHHHHHHHHSCCCTTBCCEEEEEE-----E
T ss_pred cEEEccEEEecCCeeecCcCEEEEEEEEeCCeEEEEEEECHHHH---HHHHHHHHHHHhccCCCCcCeEEEEEe-----c
Confidence 34455668999999999999997765556899999998864322 3356799999999 8999999999853 4
Q ss_pred CceEEEEEecCCCCChhhhccCCCCCcccccccCHHHHHHHHHHHHHHHHHHHhcCCCCeeecCCCCCCEEeCC---C--
Q 005045 462 NDFKALVFEFMSNGNLDQWLHPSPAEHYQFKKLSVIQRLNIAIDVASALDYLHHHCDTPIAHCDLKPSNVLLDK---D-- 536 (717)
Q Consensus 462 ~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~dlkp~NIll~~---~-- 536 (717)
....|+||||++ ++|.+++.... ...+...+..++.||+.||+|||+. +|+||||||+||+++. +
T Consensus 90 ~~~~~lv~E~~~-g~L~~~l~~~~------~~~~~~~~~~i~~qi~~aL~~LH~~---~ivHrDlKp~NIll~~~~~~~~ 159 (432)
T 3p23_A 90 RQFQYIAIELCA-ATLQEYVEQKD------FAHLGLEPITLLQQTTSGLAHLHSL---NIVHRDLKPHNILISMPNAHGK 159 (432)
T ss_dssp TTEEEEEEECCS-EEHHHHHHSSS------CCCCSSCHHHHHHHHHHHHHHHHHT---TCCCCCCSTTSEEECCCBTTTB
T ss_pred CCEEEEEEECCC-CCHHHHHHhcC------CCccchhHHHHHHHHHHHHHHHHHC---cCEeCCCCHHHEEEecCCCCCc
Confidence 558999999995 69999987553 2334445678999999999999998 9999999999999953 2
Q ss_pred CceEEeeeccchhcccccCCCCCCcceeecccccccccCCCccCC----CCCcccchhhHHHHHHHHHh-CCCCCCCCCC
Q 005045 537 MTAHVGDFGLAKFLFEISDNPSKNQTVSIGLKGSIGYIPPEHMNG----QVSILGDIYSYGILLLEMFT-GKRPTGDMFK 611 (717)
Q Consensus 537 ~~~kl~Dfg~~~~~~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~----~~~~~sDvwslG~vl~ellt-g~~p~~~~~~ 611 (717)
..+||+|||++....... ..........||+.|+|||++.+ .++.++|||||||++|||++ |..||.....
T Consensus 160 ~~~kL~DFG~a~~~~~~~----~~~~~~~~~~gt~~y~APE~l~~~~~~~~t~~~DiwSlG~il~ellt~g~~pf~~~~~ 235 (432)
T 3p23_A 160 IKAMISDFGLCKKLAVGR----HSFSRRSGVPGTEGWIAPEMLSEDCKENPTYTVDIFSAGCVFYYVISEGSHPFGKSLQ 235 (432)
T ss_dssp CCEEECCTTEEECC----------------CCSCTTSCCGGGTSCC---CCCTHHHHHHHHHHHHHHHTTSCBTTBSTTT
T ss_pred eeEEEecccceeeccCCC----cceeeccccCCCcCccChhhhhcccccCCCcHHHHHHHHHHHHHHHcCCCCCcchhhH
Confidence 368899999998652211 11122334669999999999753 46789999999999999999 9999854322
Q ss_pred CchhhhHHHHhcCChhhhhhcCC-CCCCCCCCcHHHHHHHHHHHHHHhhhhhhhcchhhhHHHHHHHHHHhhccCCCCcC
Q 005045 612 DDFSIHMFVSMALPDHVMDILDP-SMPLDEENDEEQIEEVIEEKEMMIHIDLEVNTKNKLEECFVSVLRIGLMCSTTSPR 690 (717)
Q Consensus 612 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~cl~~~p~ 690 (717)
... .. .... ...... ........+.+++.+||+.+|+
T Consensus 236 ~~~---~~-----------~~~~~~~~~~~----------------------------~~~~~~~~~~~li~~~L~~dP~ 273 (432)
T 3p23_A 236 RQA---NI-----------LLGACSLDCLH----------------------------PEKHEDVIARELIEKMIAMDPQ 273 (432)
T ss_dssp HHH---HH-----------HTTCCCCTTSC----------------------------TTCHHHHHHHHHHHHHSCSSGG
T ss_pred HHH---HH-----------HhccCCccccC----------------------------ccccccHHHHHHHHHHHhCCHh
Confidence 110 00 0000 000000 0111244567899999999999
Q ss_pred CCCCHHHHHH
Q 005045 691 ERIAMNVVVN 700 (717)
Q Consensus 691 ~Rps~~eil~ 700 (717)
+|||+.||++
T Consensus 274 ~Rps~~evl~ 283 (432)
T 3p23_A 274 KRPSAKHVLK 283 (432)
T ss_dssp GSCCHHHHHT
T ss_pred hCCCHHHHHh
Confidence 9999999984
No 291
>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}
Probab=100.00 E-value=6.7e-35 Score=334.16 Aligned_cols=250 Identities=21% Similarity=0.323 Sum_probs=198.5
Q ss_pred cccccccccccCcccccceEEEEeC--CCchhhhHHhHhh-hhhHHHHHHHHHHHHhcCCCCceeEEEEeeccccCCCCc
Q 005045 387 STDNFSKENLIGTGSFGSVYKGTLG--DGTIVAIKVLKLQ-QQGALKSFIDECNALKSTRHRNILRVITACSSVDLEGND 463 (717)
Q Consensus 387 ~~~~y~~~~~ig~g~~g~v~~~~~~--~~~~vavK~~~~~-~~~~~~~~~~e~~~l~~l~h~ni~~~~~~~~~~~~~~~~ 463 (717)
..++|++.++||+|+||.||+|.+. +++.||+|++... .......+.+|++++++++||||+++++++.........
T Consensus 78 ~~~~y~i~~~lg~G~~g~Vy~a~~~~~~~~~vaiK~~~~~~~~~~~~~~~~E~~~l~~l~hp~iv~~~~~~~~~~~~~~~ 157 (681)
T 2pzi_A 78 VAGQYEVKGCIAHGGLGWIYLALDRNVNGRPVVLKGLVHSGDAEAQAMAMAERQFLAEVVHPSIVQIFNFVEHTDRHGDP 157 (681)
T ss_dssp ETTTEEEEEEEEEETTEEEEEEEEGGGTTEEEEEEESCSSCCHHHHHHHHHHHGGGGGCCCTTBCCEEEEEEEECTTSCE
T ss_pred eCCceEEEEEEeeCCCeEEEEEEEcCCCCcEEEEEEeCccCCHHHHHHHHHHHHHHHhcCCCCcCeEeeeEeecCCCCCc
Confidence 4589999999999999999999965 6899999988643 334567788999999999999999999997654422222
Q ss_pred eEEEEEecCCCCChhhhccCCCCCcccccccCHHHHHHHHHHHHHHHHHHHhcCCCCeeecCCCCCCEEeCCCCceEEee
Q 005045 464 FKALVFEFMSNGNLDQWLHPSPAEHYQFKKLSVIQRLNIAIDVASALDYLHHHCDTPIAHCDLKPSNVLLDKDMTAHVGD 543 (717)
Q Consensus 464 ~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~dlkp~NIll~~~~~~kl~D 543 (717)
..|+||||++|++|.+++. ..+++..++.++.||+.||.|||+. +|+||||||+||+++.+ .+||+|
T Consensus 158 ~~~lv~E~~~g~~L~~~~~---------~~l~~~~~~~~~~qi~~aL~~lH~~---giiHrDlkp~NIll~~~-~~kl~D 224 (681)
T 2pzi_A 158 VGYIVMEYVGGQSLKRSKG---------QKLPVAEAIAYLLEILPALSYLHSI---GLVYNDLKPENIMLTEE-QLKLID 224 (681)
T ss_dssp EEEEEEECCCCEECC-------------CCCCHHHHHHHHHHHHHHHHHHHHT---TEECCCCSGGGEEECSS-CEEECC
T ss_pred eeEEEEEeCCCCcHHHHHh---------CCCCHHHHHHHHHHHHHHHHHHHHC---CCeecccChHHeEEeCC-cEEEEe
Confidence 3799999999999988775 3589999999999999999999998 99999999999999875 999999
Q ss_pred eccchhcccccCCCCCCcceeecccccccccCCCccCCCCCcccchhhHHHHHHHHHhCCCCCCCCCCCchhhhHHHHhc
Q 005045 544 FGLAKFLFEISDNPSKNQTVSIGLKGSIGYIPPEHMNGQVSILGDIYSYGILLLEMFTGKRPTGDMFKDDFSIHMFVSMA 623 (717)
Q Consensus 544 fg~~~~~~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~sDvwslG~vl~elltg~~p~~~~~~~~~~~~~~~~~~ 623 (717)
||.+...... ....||+.|+|||++.+.++.++|||||||++|+|++|..||.......
T Consensus 225 FG~a~~~~~~-----------~~~~gt~~y~aPE~~~~~~~~~sDi~slG~~l~~l~~g~~~~~~~~~~~---------- 283 (681)
T 2pzi_A 225 LGAVSRINSF-----------GYLYGTPGFQAPEIVRTGPTVATDIYTVGRTLAALTLDLPTRNGRYVDG---------- 283 (681)
T ss_dssp CTTCEETTCC-----------SCCCCCTTTSCTTHHHHCSCHHHHHHHHHHHHHHHHSCCCEETTEECSS----------
T ss_pred cccchhcccC-----------CccCCCccccCHHHHcCCCCCceehhhhHHHHHHHHhCCCCCccccccc----------
Confidence 9999865211 3356899999999987777999999999999999999998876421110
Q ss_pred CChhhhhhcCCCCCCCCCCcHHHHHHHHHHHHHHhhhhhhhcchhhhHHHHHHHHHHhhccCCCCcCCCC-CHHHHHHHH
Q 005045 624 LPDHVMDILDPSMPLDEENDEEQIEEVIEEKEMMIHIDLEVNTKNKLEECFVSVLRIGLMCSTTSPRERI-AMNVVVNNL 702 (717)
Q Consensus 624 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~cl~~~p~~Rp-s~~eil~~l 702 (717)
+.... .....+..+.+++.+||+.+|++|| +++++.+.+
T Consensus 284 ------------~~~~~----------------------------~~~~~~~~l~~li~~~l~~dP~~R~~~~~~l~~~l 323 (681)
T 2pzi_A 284 ------------LPEDD----------------------------PVLKTYDSYGRLLRRAIDPDPRQRFTTAEEMSAQL 323 (681)
T ss_dssp ------------CCTTC----------------------------HHHHHCHHHHHHHHHHTCSSGGGSCSSHHHHHHHH
T ss_pred ------------ccccc----------------------------cccccCHHHHHHHhhhccCChhhCCCHHHHHHHHH
Confidence 00000 0111245678999999999999999 677788888
Q ss_pred HHHHHHHH
Q 005045 703 KTIRNCFL 710 (717)
Q Consensus 703 ~~i~~~~~ 710 (717)
..+..+..
T Consensus 324 ~~~~~~~~ 331 (681)
T 2pzi_A 324 TGVLREVV 331 (681)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHhh
Confidence 87765543
No 292
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=100.00 E-value=4.1e-34 Score=296.05 Aligned_cols=253 Identities=29% Similarity=0.478 Sum_probs=188.7
Q ss_pred CCCCEEeccCCcCcc--cCChhhhccCCCCeEeccC-CCCCCCCCccccCCCCccEEEcccCcccccCCcccccCCCCcc
Q 005045 82 SSLKALSLAWNNLRG--SIPNELGQLSGLGFFTLYG-NFISGIIPSSIYNISSIYYFSVTQNQLHGQLPTDVGLTLPNLK 158 (717)
Q Consensus 82 ~~L~~L~L~~n~l~~--~~~~~~~~l~~L~~L~L~~-N~i~~~~~~~~~~l~~L~~L~L~~N~l~~~l~~~~~~~l~~L~ 158 (717)
.+++.|+|++|.+++ .+|..|.++++|++|+|++ |.+.+..|..|.++++|++|+|++|.+++.+|..+. .+++|+
T Consensus 50 ~~l~~L~L~~~~l~~~~~~~~~l~~l~~L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~-~l~~L~ 128 (313)
T 1ogq_A 50 YRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLS-QIKTLV 128 (313)
T ss_dssp CCEEEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGG-GCTTCC
T ss_pred ceEEEEECCCCCccCCcccChhHhCCCCCCeeeCCCCCcccccCChhHhcCCCCCEEECcCCeeCCcCCHHHh-CCCCCC
Confidence 468888888888887 7788888888888888884 888777888888888888888888887755444332 444555
Q ss_pred eeecccccccccCCccCCCCCCCCEEeccCccccccCCCCccCCCCCCeeeccccccCCcccCchhhhhhhccCC-CCCE
Q 005045 159 IFAGAVNYFTGSIPVSLSNASNLQVLDFAENGLTGTIPGNFGSLKDLVRLNFDQNELGSREIGDLNFLKFLANCT-SLEV 237 (717)
Q Consensus 159 ~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~l~-~L~~ 237 (717)
+|++++|.+.+.+|..+..+++|++|++++|++++.+| ..+..++ .|++
T Consensus 129 ~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p------------------------------~~l~~l~~~L~~ 178 (313)
T 1ogq_A 129 TLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIP------------------------------DSYGSFSKLFTS 178 (313)
T ss_dssp EEECCSSEEESCCCGGGGGCTTCCEEECCSSCCEEECC------------------------------GGGGCCCTTCCE
T ss_pred EEeCCCCccCCcCChHHhcCCCCCeEECcCCcccCcCC------------------------------HHHhhhhhcCcE
Confidence 55555555444444444444444444444444443333 3455555 6777
Q ss_pred EEeecCcccCcCchhhhhccccccEEecCCCccCCCCCccccCCCCCCEEEccCCcCccccchhhhcCCCCCeEEcccCc
Q 005045 238 LGLARNSFGGEMPISIANLSTHLRRLTMGENLMHGNIPVGIGNLVNLNLLGLEGNNLSGSVPEVIGRLNKLEGLGLNVNK 317 (717)
Q Consensus 238 L~L~~N~l~~~~p~~~~~~~~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~ 317 (717)
|++++|.+++.+|..+..+ .|+.|++++|.+++..|..|..+++|+.|+|++|++++..|. +..+++|++|+|++|+
T Consensus 179 L~L~~N~l~~~~~~~~~~l--~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~-~~~l~~L~~L~Ls~N~ 255 (313)
T 1ogq_A 179 MTISRNRLTGKIPPTFANL--NLAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDLGK-VGLSKNLNGLDLRNNR 255 (313)
T ss_dssp EECCSSEEEEECCGGGGGC--CCSEEECCSSEEEECCGGGCCTTSCCSEEECCSSEECCBGGG-CCCCTTCCEEECCSSC
T ss_pred EECcCCeeeccCChHHhCC--cccEEECcCCcccCcCCHHHhcCCCCCEEECCCCceeeecCc-ccccCCCCEEECcCCc
Confidence 7777777777777777776 388888888888878888888899999999999999865555 7888999999999999
Q ss_pred CCCCCCcccccccccceeecccccccccCCcCccCcCCCceEEeeccc-CCCC
Q 005045 318 FSGLIPSSLGNLTILTRLWMEENRLEGSIPPSLGNCQKLLVLNLSSND-LNGT 369 (717)
Q Consensus 318 l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~l~~N~-l~~~ 369 (717)
+++..|..|..+++|+.|+|++|++++.+|.. ..+++|+.+++++|+ ++|.
T Consensus 256 l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~-~~l~~L~~l~l~~N~~lc~~ 307 (313)
T 1ogq_A 256 IYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQG-GNLQRFDVSAYANNKCLCGS 307 (313)
T ss_dssp CEECCCGGGGGCTTCCEEECCSSEEEEECCCS-TTGGGSCGGGTCSSSEEEST
T ss_pred ccCcCChHHhcCcCCCEEECcCCcccccCCCC-ccccccChHHhcCCCCccCC
Confidence 98888999999999999999999999888886 888999999999998 6653
No 293
>3dzo_A Rhoptry kinase domain; parasitic disease, transferase, structural genomics, structural genomics consortium, SGC; 1.80A {Toxoplasma gondii}
Probab=100.00 E-value=3e-34 Score=308.84 Aligned_cols=263 Identities=16% Similarity=0.175 Sum_probs=185.8
Q ss_pred cccccccccccccccCcccccceEEEEeC-CCchhhhHHhHhhh---hhHHHHHHHHHHHHhcCCC-Cce----------
Q 005045 383 DISKSTDNFSKENLIGTGSFGSVYKGTLG-DGTIVAIKVLKLQQ---QGALKSFIDECNALKSTRH-RNI---------- 447 (717)
Q Consensus 383 ~~~~~~~~y~~~~~ig~g~~g~v~~~~~~-~~~~vavK~~~~~~---~~~~~~~~~e~~~l~~l~h-~ni---------- 447 (717)
++......|...+.||+|+||.||+|.+. +|+.||||++.... ....+.+.+|+.+++.+.| ++.
T Consensus 72 ~~~~~~~~~~~~~~LG~G~fG~Vy~a~~~~~g~~vAvK~~~~~~~~~~~~~~~~~~E~~~~~~l~~~~~~~~~~~~~~~~ 151 (413)
T 3dzo_A 72 ELGERPRTLVRGTVLGQEDPYAYLEATDQETGESFEVHVPYFTERPPSNAIKQMKEEVLRLRLLRGIKNQKQAKVHLRFI 151 (413)
T ss_dssp SSSSCCEEEEEEEEEEEETTEEEEEEEETTTCCEEEEEEECCSCC----CCHHHHHHHHGGGGSTTCCSHHHHHHHTCBC
T ss_pred cCCCCceeEEEecccccCCCEEEEEEEecCCCCceEEEEEecCCCccHHHHHHHHHHHHHHHhhccCCCHHHHHHhcccc
Confidence 45556677999999999999999999954 89999999887332 2235778999999999977 211
Q ss_pred -----eE------EEEeeccccCCCCceEEEEEecCCCCChhhhccCCCCCcccccccCHHHHHHHHHHHHHHHHHHHhc
Q 005045 448 -----LR------VITACSSVDLEGNDFKALVFEFMSNGNLDQWLHPSPAEHYQFKKLSVIQRLNIAIDVASALDYLHHH 516 (717)
Q Consensus 448 -----~~------~~~~~~~~~~~~~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~i~~~i~~~l~~LH~~ 516 (717)
+. ++..............+++|+++ +++|.+++............+++..+..++.||+.||+|||+.
T Consensus 152 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~L~~ll~~l~~~~~~~~~l~~~~~~~i~~qi~~aL~~LH~~ 230 (413)
T 3dzo_A 152 FPFDLVKDPQKKKMIRVRLDERDMWVLSRFFLYPRM-QSNLQTFGEVLLSHSSTHKSLVHHARLQLTLQVIRLLASLHHY 230 (413)
T ss_dssp CCCEEEECCC---------------CCSEEEEEECC-SEEHHHHHHHHHHHTTTSHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred cchhhcccCCCCccccccCCCccccccceEEEeehh-cCCHHHHHHHhhcccccCCCCCHHHHHHHHHHHHHHHHHHHhC
Confidence 11 11110000000122467888876 6899988841100000115688889999999999999999998
Q ss_pred CCCCeeecCCCCCCEEeCCCCceEEeeeccchhcccccCCCCCCcceeecccccccccCCCcc----------CCC-CCc
Q 005045 517 CDTPIAHCDLKPSNVLLDKDMTAHVGDFGLAKFLFEISDNPSKNQTVSIGLKGSIGYIPPEHM----------NGQ-VSI 585 (717)
Q Consensus 517 ~~~~ivH~dlkp~NIll~~~~~~kl~Dfg~~~~~~~~~~~~~~~~~~~~~~~~~~~y~aPE~~----------~~~-~~~ 585 (717)
+|+||||||+||+++.++.+||+|||+++.... ......| +.|+|||++ .+. ++.
T Consensus 231 ---~iiHrDiKp~NILl~~~~~~kL~DFG~a~~~~~----------~~~~~~g-~~y~aPE~~~~~~~~~~~~~~~~~~~ 296 (413)
T 3dzo_A 231 ---GLVHTYLRPVDIVLDQRGGVFLTGFEHLVRDGA----------SAVSPIG-RGFAPPETTAERMLPFGQHHPTLMTF 296 (413)
T ss_dssp ---TEECSCCCGGGEEECTTCCEEECCGGGCEETTE----------EECCCCC-TTTCCHHHHHHHTSTTGGGCCEEECH
T ss_pred ---CcccCCcccceEEEecCCeEEEEeccceeecCC----------ccccCCC-CceeCchhhhccccccccccCcCCCc
Confidence 999999999999999999999999999876421 1233456 899999997 332 788
Q ss_pred ccchhhHHHHHHHHHhCCCCCCCCCCCchhhhHHHHhcCChhhhhhcCCCCCCCCCCcHHHHHHHHHHHHHHhhhhhhhc
Q 005045 586 LGDIYSYGILLLEMFTGKRPTGDMFKDDFSIHMFVSMALPDHVMDILDPSMPLDEENDEEQIEEVIEEKEMMIHIDLEVN 665 (717)
Q Consensus 586 ~sDvwslG~vl~elltg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 665 (717)
++|||||||++|||++|+.||........ ...++....
T Consensus 297 ~~DvwSlGvil~elltg~~Pf~~~~~~~~-------------~~~~~~~~~----------------------------- 334 (413)
T 3dzo_A 297 AFDTWTLGLAIYWIWCADLPNTDDAALGG-------------SEWIFRSCK----------------------------- 334 (413)
T ss_dssp HHHHHHHHHHHHHHHHSSCCCCTTGGGSC-------------SGGGGSSCC-----------------------------
T ss_pred hhhHHHHHHHHHHHHHCCCCCCCcchhhh-------------HHHHHhhcc-----------------------------
Confidence 99999999999999999999975432110 001111000
Q ss_pred chhhhHHHHHHHHHHhhccCCCCcCCCCCHHHHHHH--HHHHHHH
Q 005045 666 TKNKLEECFVSVLRIGLMCSTTSPRERIAMNVVVNN--LKTIRNC 708 (717)
Q Consensus 666 ~~~~~~~~~~~l~~li~~cl~~~p~~Rps~~eil~~--l~~i~~~ 708 (717)
.++..+.+++.+||+.+|++|||+.|+++. ++.+++.
T Consensus 335 ------~~~~~~~~li~~~l~~dP~~Rpt~~~~l~~~~~~~~~~~ 373 (413)
T 3dzo_A 335 ------NIPQPVRALLEGFLRYPKEDRLLPLQAMETPEYEQLRTE 373 (413)
T ss_dssp ------CCCHHHHHHHHHHTCSSGGGSCCHHHHTTSHHHHHHHHH
T ss_pred ------cCCHHHHHHHHHHccCChhhCcCHHHHHhCHHHHHHHHH
Confidence 114567899999999999999999988754 4444433
No 294
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=100.00 E-value=3.5e-37 Score=338.26 Aligned_cols=357 Identities=17% Similarity=0.177 Sum_probs=282.3
Q ss_pred eecEEEcCCCcCcCCCCcC-CcCCCCCCEEECCCCcccc----cCCcCCCCCCCCCEEEccCccccccCCccc-cCCC--
Q 005045 11 MTQDLNLTYNYLSGKIPTN-LSHCTELRSFEASVNDFVG----QIPNQLSSLTKLEIIGLGGSNLTGNVPAWI-GNFS-- 82 (717)
Q Consensus 11 ~~~~L~L~~n~l~~~~~~~-~~~l~~L~~L~L~~n~l~~----~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~-~~l~-- 82 (717)
.+++|+|++|+++...... +..+++|++|+|++|.+++ .++..+..+++|++|+|++|.+++..+..+ ..+.
T Consensus 4 ~l~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~ 83 (461)
T 1z7x_W 4 DIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGDVGVHCVLQGLQTP 83 (461)
T ss_dssp EEEEEEEESCCCCHHHHHHHHHHHTTCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTCCCHHHHHHHHHHTTCST
T ss_pred cceehhhhhcccCchhHHHHHhhcCCccEEEccCCCCCHHHHHHHHHHHHhCCCcCEEeCCCCcCChHHHHHHHHHHhhC
Confidence 6789999999998554433 8889999999999999884 356678888999999999999986544443 3455
Q ss_pred --CCCEEeccCCcCcc----cCChhhhccCCCCeEeccCCCCCCCCCcccc-----CCCCccEEEcccCcccccCC---c
Q 005045 83 --SLKALSLAWNNLRG----SIPNELGQLSGLGFFTLYGNFISGIIPSSIY-----NISSIYYFSVTQNQLHGQLP---T 148 (717)
Q Consensus 83 --~L~~L~L~~n~l~~----~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~-----~l~~L~~L~L~~N~l~~~l~---~ 148 (717)
+|++|+|++|+|+. .++..|..+++|++|+|++|.++...+..+. .+++|++|+|++|.+++... .
T Consensus 84 ~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~ 163 (461)
T 1z7x_W 84 SCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLA 163 (461)
T ss_dssp TCCCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHH
T ss_pred CCceeEEEccCCCCCHHHHHHHHHHHccCCceeEEECCCCcCchHHHHHHHHHHhcCCCcceEEECCCCCCCHHHHHHHH
Confidence 69999999999984 4588899999999999999999754444333 36689999999999984322 2
Q ss_pred ccccCCCCcceeecccccccccCCccCC-----CCCCCCEEeccCcccccc----CCCCccCCCCCCeeeccccccCCcc
Q 005045 149 DVGLTLPNLKIFAGAVNYFTGSIPVSLS-----NASNLQVLDFAENGLTGT----IPGNFGSLKDLVRLNFDQNELGSRE 219 (717)
Q Consensus 149 ~~~~~l~~L~~L~l~~n~l~~~~~~~~~-----~l~~L~~L~l~~N~l~~~----~~~~~~~l~~L~~L~l~~N~l~~~~ 219 (717)
..+..+++|+.|++++|.+....+..+. ..++|++|++++|.++.. ++..+..+++|++|++++|.++..+
T Consensus 164 ~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~ 243 (461)
T 1z7x_W 164 SVLRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKLGDVG 243 (461)
T ss_dssp HHHHHCTTCCEEECCSSBCHHHHHHHHHHHHHHSCCCCCEEECTTSCCBTTHHHHHHHHHHHCTTCCEEECCSSBCHHHH
T ss_pred HHHhhCCCCCEEECcCCCcchHHHHHHHHHHhcCCCCceEEEccCCCCcHHHHHHHHHHHHhCCCccEEeccCCcCChHH
Confidence 2234679999999999998865554443 367999999999999863 4667778999999999999988754
Q ss_pred cCchhhhhhhccCCCCCEEEeecCcccCc----CchhhhhccccccEEecCCCccCCCCCccccC-----CCCCCEEEcc
Q 005045 220 IGDLNFLKFLANCTSLEVLGLARNSFGGE----MPISIANLSTHLRRLTMGENLMHGNIPVGIGN-----LVNLNLLGLE 290 (717)
Q Consensus 220 ~~~~~~~~~~~~l~~L~~L~L~~N~l~~~----~p~~~~~~~~~L~~L~l~~N~l~~~~~~~~~~-----l~~L~~L~L~ 290 (717)
...+. +..+..+++|++|++++|.+++. ++..+... ++|++|++++|.+.+..+..+.. .++|+.|+|+
T Consensus 244 ~~~l~-~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~-~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~ 321 (461)
T 1z7x_W 244 MAELC-PGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAK-ESLKELSLAGNELGDEGARLLCETLLEPGCQLESLWVK 321 (461)
T ss_dssp HHHHH-HHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHC-TTCCEEECTTCCCHHHHHHHHHHHHTSTTCCCCEEECT
T ss_pred HHHHH-HHHhcCCCCceEEECcCCCCCHHHHHHHHHHHhhC-CCcceEECCCCCCchHHHHHHHHHhccCCccceeeEcC
Confidence 32221 22334689999999999999954 56666666 58999999999987554444433 3799999999
Q ss_pred CCcCccc----cchhhhcCCCCCeEEcccCcCCCCCCccccc-----ccccceeecccccccc----cCCcCccCcCCCc
Q 005045 291 GNNLSGS----VPEVIGRLNKLEGLGLNVNKFSGLIPSSLGN-----LTILTRLWMEENRLEG----SIPPSLGNCQKLL 357 (717)
Q Consensus 291 ~N~l~~~----~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~-----l~~L~~L~L~~N~l~~----~~p~~~~~l~~L~ 357 (717)
+|.+++. ++..+..+++|++|+|++|++++..+..+.. .++|+.|+|++|++++ .+|..+..+++|+
T Consensus 322 ~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~ 401 (461)
T 1z7x_W 322 SCSFTAACCSHFSSVLAQNRFLLELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLR 401 (461)
T ss_dssp TSCCBGGGHHHHHHHHHHCSSCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCCCCC
T ss_pred CCCCchHHHHHHHHHHhhCCCccEEEccCCccccccHHHHHHHHcCCCCceEEEECCCCCCChhhHHHHHHHHHhCCCcc
Confidence 9999865 4667778899999999999998765555553 5799999999999986 6888888999999
Q ss_pred eEEeecccCCCC
Q 005045 358 VLNLSSNDLNGT 369 (717)
Q Consensus 358 ~L~l~~N~l~~~ 369 (717)
+|++++|++++.
T Consensus 402 ~L~l~~N~i~~~ 413 (461)
T 1z7x_W 402 ELDLSNNCLGDA 413 (461)
T ss_dssp EEECCSSSCCHH
T ss_pred EEECCCCCCCHH
Confidence 999999999843
No 295
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=100.00 E-value=1.5e-33 Score=291.91 Aligned_cols=249 Identities=29% Similarity=0.449 Sum_probs=206.1
Q ss_pred CCCCEEEccCccccc--cCCccccCCCCCCEEeccC-CcCcccCChhhhccCCCCeEeccCCCCCCCCCccccCCCCccE
Q 005045 58 TKLEIIGLGGSNLTG--NVPAWIGNFSSLKALSLAW-NNLRGSIPNELGQLSGLGFFTLYGNFISGIIPSSIYNISSIYY 134 (717)
Q Consensus 58 ~~L~~L~L~~n~l~~--~~p~~~~~l~~L~~L~L~~-n~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~ 134 (717)
.+++.|+|++|.+++ .+|..|.++++|++|+|++ |.+.+.+|..|.++++|++|+|++|.+++..|..|.++++|++
T Consensus 50 ~~l~~L~L~~~~l~~~~~~~~~l~~l~~L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~ 129 (313)
T 1ogq_A 50 YRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVT 129 (313)
T ss_dssp CCEEEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCE
T ss_pred ceEEEEECCCCCccCCcccChhHhCCCCCCeeeCCCCCcccccCChhHhcCCCCCEEECcCCeeCCcCCHHHhCCCCCCE
Confidence 579999999999998 8999999999999999995 9999999999999999999999999999999999999999999
Q ss_pred EEcccCcccccCCcccccCCCCcceeecccccccccCCccCCCCC-CCCEEeccCccccccCCCCccCCCCCCeeecccc
Q 005045 135 FSVTQNQLHGQLPTDVGLTLPNLKIFAGAVNYFTGSIPVSLSNAS-NLQVLDFAENGLTGTIPGNFGSLKDLVRLNFDQN 213 (717)
Q Consensus 135 L~L~~N~l~~~l~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~-~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N 213 (717)
|+|++|.+++.+|..+. .+++|++|++++|.+++.+|..+..++ +|++|++++|++++..|..|..++ |+.|++++|
T Consensus 130 L~Ls~N~l~~~~p~~~~-~l~~L~~L~L~~N~l~~~~p~~l~~l~~~L~~L~L~~N~l~~~~~~~~~~l~-L~~L~Ls~N 207 (313)
T 1ogq_A 130 LDFSYNALSGTLPPSIS-SLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLN-LAFVDLSRN 207 (313)
T ss_dssp EECCSSEEESCCCGGGG-GCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEECCGGGGGCC-CSEEECCSS
T ss_pred EeCCCCccCCcCChHHh-cCCCCCeEECcCCcccCcCCHHHhhhhhcCcEEECcCCeeeccCChHHhCCc-ccEEECcCC
Confidence 99999999977776654 899999999999999999999999998 999999999999988888777776 777777777
Q ss_pred ccCCcccCchhhhhhhccCCCCCEEEeecCcccCcCchhhhhccccccEEecCCCccCCCCCccccCCCCCCEEEccCCc
Q 005045 214 ELGSREIGDLNFLKFLANCTSLEVLGLARNSFGGEMPISIANLSTHLRRLTMGENLMHGNIPVGIGNLVNLNLLGLEGNN 293 (717)
Q Consensus 214 ~l~~~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~~~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~L~~N~ 293 (717)
.++... +..+..+++|+.|+|++|.+++.+| . +..+++|++|+|++|+
T Consensus 208 ~l~~~~------~~~~~~l~~L~~L~L~~N~l~~~~~-------------------------~-~~~l~~L~~L~Ls~N~ 255 (313)
T 1ogq_A 208 MLEGDA------SVLFGSDKNTQKIHLAKNSLAFDLG-------------------------K-VGLSKNLNGLDLRNNR 255 (313)
T ss_dssp EEEECC------GGGCCTTSCCSEEECCSSEECCBGG-------------------------G-CCCCTTCCEEECCSSC
T ss_pred cccCcC------CHHHhcCCCCCEEECCCCceeeecC-------------------------c-ccccCCCCEEECcCCc
Confidence 776554 4556666666666666666653322 2 4456677777777777
Q ss_pred CccccchhhhcCCCCCeEEcccCcCCCCCCcccccccccceeeccccc
Q 005045 294 LSGSVPEVIGRLNKLEGLGLNVNKFSGLIPSSLGNLTILTRLWMEENR 341 (717)
Q Consensus 294 l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~ 341 (717)
+++.+|..+..+++|++|+|++|++++.+|.. ..+++|+.|++++|+
T Consensus 256 l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~-~~l~~L~~l~l~~N~ 302 (313)
T 1ogq_A 256 IYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQG-GNLQRFDVSAYANNK 302 (313)
T ss_dssp CEECCCGGGGGCTTCCEEECCSSEEEEECCCS-TTGGGSCGGGTCSSS
T ss_pred ccCcCChHHhcCcCCCEEECcCCcccccCCCC-ccccccChHHhcCCC
Confidence 77677777777777777777777777666665 677777777777777
No 296
>3m2w_A MAP kinase-activated protein kinase 2; small molecule inhibitor, spiroazetidine-tetracycle, ATP-SIT inhibitor, novartis compound NVP-BXS169; HET: L8I; 2.41A {Homo sapiens} PDB: 3kga_A* 3m42_A*
Probab=100.00 E-value=4.3e-34 Score=294.45 Aligned_cols=237 Identities=20% Similarity=0.275 Sum_probs=179.0
Q ss_pred cccccccc-cccCcccccceEEEEeC-CCchhhhHHhHhhhhhHHHHHHHHHHHH-hcCCCCceeEEEEeeccccCCCCc
Q 005045 387 STDNFSKE-NLIGTGSFGSVYKGTLG-DGTIVAIKVLKLQQQGALKSFIDECNAL-KSTRHRNILRVITACSSVDLEGND 463 (717)
Q Consensus 387 ~~~~y~~~-~~ig~g~~g~v~~~~~~-~~~~vavK~~~~~~~~~~~~~~~e~~~l-~~l~h~ni~~~~~~~~~~~~~~~~ 463 (717)
..++|.+. +.||+|+||.||.|.+. +++.||+|++... ..+.+|+.++ +...||||+++++++... .....
T Consensus 15 ~~~~y~~~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~-----~~~~~e~~~~~~~~~h~~i~~~~~~~~~~-~~~~~ 88 (299)
T 3m2w_A 15 IIDDYKVTSQVLGLGINGKVLQIFNKRTQEKFALKMLQDC-----PKARREVELHWRASQCPHIVRIVDVYENL-YAGRK 88 (299)
T ss_dssp GGGTEEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEECS-----HHHHHHHHHHHHHTTSTTBCCEEEEEEEE-ETTEE
T ss_pred cccchhhcCcccccCCCeEEEEEEEcCCCcEEEEEEeccc-----HHHHHHHHHHHHhccCCCchhHHhhhhhh-cCCCc
Confidence 44677777 78999999999999964 7899999998532 4566788887 556999999999986542 23356
Q ss_pred eEEEEEecCCCCChhhhccCCCCCcccccccCHHHHHHHHHHHHHHHHHHHhcCCCCeeecCCCCCCEEeCC---CCceE
Q 005045 464 FKALVFEFMSNGNLDQWLHPSPAEHYQFKKLSVIQRLNIAIDVASALDYLHHHCDTPIAHCDLKPSNVLLDK---DMTAH 540 (717)
Q Consensus 464 ~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~dlkp~NIll~~---~~~~k 540 (717)
..++||||+++++|.+++..... ..+++..+..++.||+.||+|||+. +|+||||||+||+++. ++.+|
T Consensus 89 ~~~lv~e~~~~~~L~~~l~~~~~-----~~~~~~~~~~i~~qi~~~l~~lH~~---~i~H~dlkp~Nil~~~~~~~~~~k 160 (299)
T 3m2w_A 89 CLLIVMECLDGGELFSRIQDRGD-----QAFTEREASEIMKSIGEAIQYLHSI---NIAHRDVKPENLLYTSKRPNAILK 160 (299)
T ss_dssp EEEEEECCCCSCBHHHHHHHCTT-----CCCBHHHHHHHHHHHHHHHHHHHHT---TEECCCCSGGGEEESSSSTTCCEE
T ss_pred eEEEEEeecCCCcHHHHHHhccC-----CCCCHHHHHHHHHHHHHHHHHHHhC---CcccCCCCHHHEEEecCCCCCcEE
Confidence 78999999999999999975421 4689999999999999999999998 9999999999999997 78999
Q ss_pred EeeeccchhcccccCCCCCCcceeecccccccccCCCccCCCCCcccchhhHHHHHHHHHhCCCCCCCCCCCchhhhHHH
Q 005045 541 VGDFGLAKFLFEISDNPSKNQTVSIGLKGSIGYIPPEHMNGQVSILGDIYSYGILLLEMFTGKRPTGDMFKDDFSIHMFV 620 (717)
Q Consensus 541 l~Dfg~~~~~~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~sDvwslG~vl~elltg~~p~~~~~~~~~~~~~~~ 620 (717)
|+|||.+.... ...++.++|||||||++|+|++|..||..........
T Consensus 161 l~Dfg~a~~~~----------------------------~~~~~~~~DiwslG~il~el~tg~~pf~~~~~~~~~~---- 208 (299)
T 3m2w_A 161 LTDFGFAKETT----------------------------GEKYDKSCDMWSLGVIMYILLCGYPPFYSNHGLAISP---- 208 (299)
T ss_dssp ECCCTTCEECT----------------------------TCGGGGHHHHHHHHHHHHHHHHSSCSCCC-------C----
T ss_pred Eeccccccccc----------------------------cccCCchhhHHHHHHHHHHHHHCCCCCCCCcchhhhH----
Confidence 99999886430 1346789999999999999999999996543221100
Q ss_pred HhcCChhhhhhcCCCCCCCCCCcHHHHHHHHHHHHHHhhhhhhhcchhhhHHHHHHHHHHhhccCCCCcCCCCCHHHHHH
Q 005045 621 SMALPDHVMDILDPSMPLDEENDEEQIEEVIEEKEMMIHIDLEVNTKNKLEECFVSVLRIGLMCSTTSPRERIAMNVVVN 700 (717)
Q Consensus 621 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~cl~~~p~~Rps~~eil~ 700 (717)
.. ...+........ ......++..+.+++.+||+.+|++|||+.|+++
T Consensus 209 --~~---~~~~~~~~~~~~---------------------------~~~~~~~~~~~~~li~~~l~~dP~~Rps~~e~l~ 256 (299)
T 3m2w_A 209 --GM---KTRIRMGQYEFP---------------------------NPEWSEVSEEVKMLIRNLLKTEPTQRMTITEFMN 256 (299)
T ss_dssp --CS---CCSSCTTCCSSC---------------------------HHHHTTSCHHHHHHHHHHTCSSTTTSCCHHHHHT
T ss_pred --HH---HHHHhhccccCC---------------------------chhcccCCHHHHHHHHHHcccChhhCCCHHHHhc
Confidence 00 000000000000 0011223567889999999999999999999986
Q ss_pred H
Q 005045 701 N 701 (717)
Q Consensus 701 ~ 701 (717)
.
T Consensus 257 h 257 (299)
T 3m2w_A 257 H 257 (299)
T ss_dssp S
T ss_pred C
Confidence 3
No 297
>2vuw_A Serine/threonine-protein kinase haspin; cell cycle, transferase, CAsp8, nucleotide binding; HET: MSE 5ID MPD; 1.80A {Homo sapiens} PDB: 3f2n_A* 3e7v_A* 3dlz_A* 3fmd_A* 3iq7_A* 2wb8_A
Probab=100.00 E-value=2.9e-34 Score=301.02 Aligned_cols=197 Identities=20% Similarity=0.203 Sum_probs=161.6
Q ss_pred cccccccccccCcccccceEEEEeCCCchhhhHHhHhhh--------hhHHHHHHHHHHHHhcCC---------CCceeE
Q 005045 387 STDNFSKENLIGTGSFGSVYKGTLGDGTIVAIKVLKLQQ--------QGALKSFIDECNALKSTR---------HRNILR 449 (717)
Q Consensus 387 ~~~~y~~~~~ig~g~~g~v~~~~~~~~~~vavK~~~~~~--------~~~~~~~~~e~~~l~~l~---------h~ni~~ 449 (717)
..++|++.+.||+|+||.||+|++ +|+.||+|++.... ....+.+.+|++++++++ ||||++
T Consensus 18 ~~~~y~~~~~lG~G~~g~V~~~~~-~~~~vAvK~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~~l~~~~~~~h~niv~ 96 (336)
T 2vuw_A 18 PTEKLQRCEKIGEGVFGEVFQTIA-DHTPVAIKIIAIEGPDLVNGSHQKTFEEILPEIIISKELSLLSGEVCNRTEGFIG 96 (336)
T ss_dssp CHHHHHTCEEEEEETTEEEEEEEE-TTEEEEEEEEEESCSSCBTTBCCBCHHHHHHHHHHHHHHHHGGGCSSSBCCCBCC
T ss_pred ccccchheeeecccCceEEEEEEe-CCceEEEEEEecCCccccccccchhHHHHHHHHHHHHHHHHhhccccccCCchhh
Confidence 357899999999999999999998 68999999997542 223467888999988885 777777
Q ss_pred EEEeecccc-------------------------CCCCceEEEEEecCCCCChhhhccCCCCCcccccccCHHHHHHHHH
Q 005045 450 VITACSSVD-------------------------LEGNDFKALVFEFMSNGNLDQWLHPSPAEHYQFKKLSVIQRLNIAI 504 (717)
Q Consensus 450 ~~~~~~~~~-------------------------~~~~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~i~~ 504 (717)
+.+.+.... +.+.+..|+||||+++|++.+.+.+ ..+++..++.++.
T Consensus 97 l~~~~~~~~~~hp~iv~~~~~~~~~~~~~~~~~~~~~~~~~~lv~E~~~~g~ll~~~~~--------~~~~~~~~~~i~~ 168 (336)
T 2vuw_A 97 LNSVHCVQGSYPPLLLKAWDHYNSTKGSANDRPDFFKDDQLFIVLEFEFGGIDLEQMRT--------KLSSLATAKSILH 168 (336)
T ss_dssp EEEEEEEESSCCHHHHHHHHHHHHHTCCSSCCSCCCCTTCEEEEEEEECCCEETGGGTT--------TCCCHHHHHHHHH
T ss_pred hcceeEecCCCcHHHHHHHHHHhhhccccccCccccccCeEEEEEEecCCCccHHHHHh--------cCCCHHHHHHHHH
Confidence 776532110 1125689999999999977666643 3579999999999
Q ss_pred HHHHHHHHHH-hcCCCCeeecCCCCCCEEeCCCC--------------------ceEEeeeccchhcccccCCCCCCcce
Q 005045 505 DVASALDYLH-HHCDTPIAHCDLKPSNVLLDKDM--------------------TAHVGDFGLAKFLFEISDNPSKNQTV 563 (717)
Q Consensus 505 ~i~~~l~~LH-~~~~~~ivH~dlkp~NIll~~~~--------------------~~kl~Dfg~~~~~~~~~~~~~~~~~~ 563 (717)
||+.||+||| +. +|+||||||+|||++.++ .+||+|||+|+....
T Consensus 169 qi~~aL~~lH~~~---~ivHrDlKp~NILl~~~~~~~~~~~~~~~~~~~~~~~~~vkL~DFG~a~~~~~----------- 234 (336)
T 2vuw_A 169 QLTASLAVAEASL---RFEHRDLHWGNVLLKKTSLKKLHYTLNGKSSTIPSCGLQVSIIDYTLSRLERD----------- 234 (336)
T ss_dssp HHHHHHHHHHHHH---CCBCSCCCGGGEEEEECSCSEEEEEETTEEEEEECTTEEEEECCCTTCBEEET-----------
T ss_pred HHHHHHHHHHHhC---CEeECCCCHHHEEEeccCCcceeeeccCccccccCCCceEEEeeccccEecCC-----------
Confidence 9999999999 87 999999999999999887 999999999986521
Q ss_pred eecccccccccCCCccCCCCCcccchhhHHHH-HHHHHhCCCCCC
Q 005045 564 SIGLKGSIGYIPPEHMNGQVSILGDIYSYGIL-LLEMFTGKRPTG 607 (717)
Q Consensus 564 ~~~~~~~~~y~aPE~~~~~~~~~sDvwslG~v-l~elltg~~p~~ 607 (717)
....||+.|+|||++.|..+.++||||+|++ .+++++|..||.
T Consensus 235 -~~~~gt~~y~aPE~~~g~~~~~~Diwsl~~~~~~~~~~g~~p~~ 278 (336)
T 2vuw_A 235 -GIVVFCDVSMDEDLFTGDGDYQFDIYRLMKKENNNRWGEYHPYS 278 (336)
T ss_dssp -TEEECCCCTTCSGGGCCCSSHHHHHHHHHHHHHTTCTTSCCTHH
T ss_pred -CcEEEeecccChhhhcCCCccceehhhhhCCCCcccccccCCCc
Confidence 1246899999999998888999999998877 777888999873
No 298
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.98 E-value=5.5e-32 Score=285.65 Aligned_cols=279 Identities=17% Similarity=0.221 Sum_probs=169.1
Q ss_pred CcCCCCCCEEECCCCcccccCCcCCCCCCCCCEEEccCccccccCCccccCCCCCCEEeccCCcCcccCChhhhccCCCC
Q 005045 30 LSHCTELRSFEASVNDFVGQIPNQLSSLTKLEIIGLGGSNLTGNVPAWIGNFSSLKALSLAWNNLRGSIPNELGQLSGLG 109 (717)
Q Consensus 30 ~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~ 109 (717)
-..|+.....++++|.++ .+|..+. ++|++|+|++|.+++..+..|.++++|++|+|++|++++..+..|.++++|+
T Consensus 27 ~~~C~~~~~c~~~~~~l~-~iP~~~~--~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~ 103 (353)
T 2z80_A 27 SLSCDRNGICKGSSGSLN-SIPSGLT--EAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLE 103 (353)
T ss_dssp CCEECTTSEEECCSTTCS-SCCTTCC--TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCC
T ss_pred CCCCCCCeEeeCCCCCcc-ccccccc--ccCcEEECCCCcCcccCHHHhccCCCCCEEECCCCccCccCHhhcCCCCCCC
Confidence 445566667788888877 6666554 3788888888888765555777788888888888888776677777788888
Q ss_pred eEeccCCCCCCCCCccccCCCCccEEEcccCcccccCCc-ccccCCCCcceeecccc-cccccCCccCCCCCCCCEEecc
Q 005045 110 FFTLYGNFISGIIPSSIYNISSIYYFSVTQNQLHGQLPT-DVGLTLPNLKIFAGAVN-YFTGSIPVSLSNASNLQVLDFA 187 (717)
Q Consensus 110 ~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~~l~~-~~~~~l~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~l~ 187 (717)
+|+|++|+++++.+..|.++++|++|+|++|+++ .+|. ..+..+++|+.|++++| .+....+..|.++++|++|+++
T Consensus 104 ~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~-~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~ 182 (353)
T 2z80_A 104 HLDLSYNYLSNLSSSWFKPLSSLTFLNLLGNPYK-TLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEID 182 (353)
T ss_dssp EEECCSSCCSSCCHHHHTTCTTCSEEECTTCCCS-SSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEE
T ss_pred EEECCCCcCCcCCHhHhCCCccCCEEECCCCCCc-ccCchhhhccCCCCcEEECCCCccccccCHHHccCCCCCCEEECC
Confidence 8888888887655556777778888888888776 5555 45556666666666666 3554455556666666666666
Q ss_pred CccccccCCCCccCCCCCCeeeccccccCCcccCchhhhhhhccCCCCCEEEeecCcccCcCchhhhhccccccEEecCC
Q 005045 188 ENGLTGTIPGNFGSLKDLVRLNFDQNELGSREIGDLNFLKFLANCTSLEVLGLARNSFGGEMPISIANLSTHLRRLTMGE 267 (717)
Q Consensus 188 ~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~~~~L~~L~l~~ 267 (717)
+|.+++..|..|..+++|++|++++|.++.++ ...+..+++|+.|++++|.++
T Consensus 183 ~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~------~~~~~~~~~L~~L~L~~n~l~--------------------- 235 (353)
T 2z80_A 183 ASDLQSYEPKSLKSIQNVSHLILHMKQHILLL------EIFVDVTSSVECLELRDTDLD--------------------- 235 (353)
T ss_dssp ETTCCEECTTTTTTCSEEEEEEEECSCSTTHH------HHHHHHTTTEEEEEEESCBCT---------------------
T ss_pred CCCcCccCHHHHhccccCCeecCCCCccccch------hhhhhhcccccEEECCCCccc---------------------
Confidence 66666555555555555555555555554433 223334455555555555544
Q ss_pred CccCCCCCccc---cCCCCCCEEEccCCcCcc----ccchhhhcCCCCCeEEcccCcCCCCCCcccccccccceeecccc
Q 005045 268 NLMHGNIPVGI---GNLVNLNLLGLEGNNLSG----SVPEVIGRLNKLEGLGLNVNKFSGLIPSSLGNLTILTRLWMEEN 340 (717)
Q Consensus 268 N~l~~~~~~~~---~~l~~L~~L~L~~N~l~~----~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N 340 (717)
+..+..+ .....++.++|++|.+++ .+|..+..+++|++|+|++|+++.+.+..|..+++|++|+|++|
T Consensus 236 ----~~~~~~l~~~~~~~~l~~l~L~~~~l~~~~l~~l~~~l~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N 311 (353)
T 2z80_A 236 ----TFHFSELSTGETNSLIKKFTFRNVKITDESLFQVMKLLNQISGLLELEFSRNQLKSVPDGIFDRLTSLQKIWLHTN 311 (353)
T ss_dssp ----TCCCC------CCCCCCEEEEESCBCCHHHHHHHHHHHHTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred ----cccccccccccccchhhccccccccccCcchhhhHHHHhcccCCCEEECCCCCCCccCHHHHhcCCCCCEEEeeCC
Confidence 3222221 123456666666666553 24445555555555555555555333333344444444444444
Q ss_pred ccc
Q 005045 341 RLE 343 (717)
Q Consensus 341 ~l~ 343 (717)
++.
T Consensus 312 ~~~ 314 (353)
T 2z80_A 312 PWD 314 (353)
T ss_dssp CBC
T ss_pred Ccc
Confidence 444
No 299
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.98 E-value=1.7e-35 Score=324.85 Aligned_cols=360 Identities=18% Similarity=0.096 Sum_probs=285.2
Q ss_pred ceecEEEcCCCcCcC----CCCcCCcCCCCCCEEECCCCcccccCCcCC-CCCC----CCCEEEccCccccc----cCCc
Q 005045 10 LMTQDLNLTYNYLSG----KIPTNLSHCTELRSFEASVNDFVGQIPNQL-SSLT----KLEIIGLGGSNLTG----NVPA 76 (717)
Q Consensus 10 ~~~~~L~L~~n~l~~----~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~-~~l~----~L~~L~L~~n~l~~----~~p~ 76 (717)
.++++|+|++|+++. .++..+..+++|++|+|++|.+++..+..+ ..++ +|++|+|++|.+++ .++.
T Consensus 28 ~~L~~L~L~~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~L~~n~i~~~~~~~l~~ 107 (461)
T 1z7x_W 28 QQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGCGVLSS 107 (461)
T ss_dssp TTCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTCCCHHHHHHHHHHTTCSTTCCCCEEECTTSCCBGGGHHHHHH
T ss_pred CCccEEEccCCCCCHHHHHHHHHHHHhCCCcCEEeCCCCcCChHHHHHHHHHHhhCCCceeEEEccCCCCCHHHHHHHHH
Confidence 378999999999984 357788899999999999999986444333 3344 79999999999984 5588
Q ss_pred cccCCCCCCEEeccCCcCcccCChhhhc-----cCCCCeEeccCCCCCCCC----CccccCCCCccEEEcccCcccccCC
Q 005045 77 WIGNFSSLKALSLAWNNLRGSIPNELGQ-----LSGLGFFTLYGNFISGII----PSSIYNISSIYYFSVTQNQLHGQLP 147 (717)
Q Consensus 77 ~~~~l~~L~~L~L~~n~l~~~~~~~~~~-----l~~L~~L~L~~N~i~~~~----~~~~~~l~~L~~L~L~~N~l~~~l~ 147 (717)
.+..+++|++|+|++|.++...+..+.. .++|++|+|++|.+++.. +..+..+++|++|+|++|.+++..+
T Consensus 108 ~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~ 187 (461)
T 1z7x_W 108 TLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLASVLRAKPDFKELTVSNNDINEAGV 187 (461)
T ss_dssp HTTSCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCTTCCEEECCSSBCHHHHH
T ss_pred HHccCCceeEEECCCCcCchHHHHHHHHHHhcCCCcceEEECCCCCCCHHHHHHHHHHHhhCCCCCEEECcCCCcchHHH
Confidence 8999999999999999998655555443 568999999999998643 5667788999999999999974333
Q ss_pred cccc----cCCCCcceeeccccccccc----CCccCCCCCCCCEEeccCccccccC-----CCCccCCCCCCeeeccccc
Q 005045 148 TDVG----LTLPNLKIFAGAVNYFTGS----IPVSLSNASNLQVLDFAENGLTGTI-----PGNFGSLKDLVRLNFDQNE 214 (717)
Q Consensus 148 ~~~~----~~l~~L~~L~l~~n~l~~~----~~~~~~~l~~L~~L~l~~N~l~~~~-----~~~~~~l~~L~~L~l~~N~ 214 (717)
..+. ...++|+.|++++|.++.. ++..+..+++|++|++++|.+++.. +..+..+++|++|++++|.
T Consensus 188 ~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~~~~~~~~L~~L~L~~n~ 267 (461)
T 1z7x_W 188 RVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKLGDVGMAELCPGLLHPSSRLRTLWIWECG 267 (461)
T ss_dssp HHHHHHHHHSCCCCCEEECTTSCCBTTHHHHHHHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSC
T ss_pred HHHHHHHhcCCCCceEEEccCCCCcHHHHHHHHHHHHhCCCccEEeccCCcCChHHHHHHHHHHhcCCCCceEEECcCCC
Confidence 3332 2467999999999999864 4667788999999999999998543 3334468999999999999
Q ss_pred cCCcccCchhhhhhhccCCCCCEEEeecCcccCcCchhhhhc----cccccEEecCCCccCCC----CCccccCCCCCCE
Q 005045 215 LGSREIGDLNFLKFLANCTSLEVLGLARNSFGGEMPISIANL----STHLRRLTMGENLMHGN----IPVGIGNLVNLNL 286 (717)
Q Consensus 215 l~~~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~----~~~L~~L~l~~N~l~~~----~~~~~~~l~~L~~ 286 (717)
++..+... ++..+..+++|++|++++|.+++..+..+... .++|++|++++|.+++. ++..+..+++|++
T Consensus 268 l~~~~~~~--l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~ 345 (461)
T 1z7x_W 268 ITAKGCGD--LCRVLRAKESLKELSLAGNELGDEGARLLCETLLEPGCQLESLWVKSCSFTAACCSHFSSVLAQNRFLLE 345 (461)
T ss_dssp CCHHHHHH--HHHHHHHCTTCCEEECTTCCCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCSSCCE
T ss_pred CCHHHHHH--HHHHHhhCCCcceEECCCCCCchHHHHHHHHHhccCCccceeeEcCCCCCchHHHHHHHHHHhhCCCccE
Confidence 98754222 25667889999999999999986656555543 24899999999999865 4566778899999
Q ss_pred EEccCCcCccccchhhhc-----CCCCCeEEcccCcCCC----CCCcccccccccceeecccccccccCCcCcc-----C
Q 005045 287 LGLEGNNLSGSVPEVIGR-----LNKLEGLGLNVNKFSG----LIPSSLGNLTILTRLWMEENRLEGSIPPSLG-----N 352 (717)
Q Consensus 287 L~L~~N~l~~~~~~~~~~-----l~~L~~L~Ls~N~l~~----~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~-----~ 352 (717)
|+|++|++++..+..+.. .++|++|+|++|++++ .+|..+..+++|++|+|++|++++.....+. .
T Consensus 346 L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~l~~N~i~~~~~~~l~~~l~~~ 425 (461)
T 1z7x_W 346 LQISNNRLEDAGVRELCQGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGDAGILQLVESVRQP 425 (461)
T ss_dssp EECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCCCCCEEECCSSSCCHHHHHHHHHHHTST
T ss_pred EEccCCccccccHHHHHHHHcCCCCceEEEECCCCCCChhhHHHHHHHHHhCCCccEEECCCCCCCHHHHHHHHHHhccC
Confidence 999999999766666654 6799999999999986 6678888899999999999999854222221 2
Q ss_pred cCCCceEEeecccCCCCCC
Q 005045 353 CQKLLVLNLSSNDLNGTIP 371 (717)
Q Consensus 353 l~~L~~L~l~~N~l~~~~p 371 (717)
..+|+.|++.++.+....+
T Consensus 426 ~~~L~~L~~~~~~~~~~~~ 444 (461)
T 1z7x_W 426 GCLLEQLVLYDIYWSEEME 444 (461)
T ss_dssp TCCCCEEECTTCCCCHHHH
T ss_pred CcchhheeecccccCHHHH
Confidence 3468888888888764433
No 300
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.97 E-value=5.8e-32 Score=285.46 Aligned_cols=280 Identities=16% Similarity=0.161 Sum_probs=221.7
Q ss_pred cEEEcCCCcCcCCCCcCCcCCCCCCEEECCCCcccccCCcCCCCCCCCCEEEccCccccccCCccccCCCCCCEEeccCC
Q 005045 13 QDLNLTYNYLSGKIPTNLSHCTELRSFEASVNDFVGQIPNQLSSLTKLEIIGLGGSNLTGNVPAWIGNFSSLKALSLAWN 92 (717)
Q Consensus 13 ~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n 92 (717)
...++++++++ .+|..+. ++|++|++++|.+++..+..|.++++|++|+|++|.+++..|..|.++++|++|+|++|
T Consensus 34 ~~c~~~~~~l~-~iP~~~~--~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n 110 (353)
T 2z80_A 34 GICKGSSGSLN-SIPSGLT--EAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYN 110 (353)
T ss_dssp SEEECCSTTCS-SCCTTCC--TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSS
T ss_pred eEeeCCCCCcc-ccccccc--ccCcEEECCCCcCcccCHHHhccCCCCCEEECCCCccCccCHhhcCCCCCCCEEECCCC
Confidence 45899999999 6777665 59999999999999777778999999999999999999888889999999999999999
Q ss_pred cCcccCChhhhccCCCCeEeccCCCCCCCCC-ccccCCCCccEEEcccCc-ccccCCcccccCCCCcceeeccccccccc
Q 005045 93 NLRGSIPNELGQLSGLGFFTLYGNFISGIIP-SSIYNISSIYYFSVTQNQ-LHGQLPTDVGLTLPNLKIFAGAVNYFTGS 170 (717)
Q Consensus 93 ~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~-~~~~~l~~L~~L~L~~N~-l~~~l~~~~~~~l~~L~~L~l~~n~l~~~ 170 (717)
++++..+..|.++++|++|+|++|+++.+.+ ..|.++++|++|++++|. ++ .++...+..+++|+.|++++|.+.+.
T Consensus 111 ~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~~l~~L~~L~l~~n~~~~-~~~~~~~~~l~~L~~L~l~~n~l~~~ 189 (353)
T 2z80_A 111 YLSNLSSSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMDTFT-KIQRKDFAGLTFLEELEIDASDLQSY 189 (353)
T ss_dssp CCSSCCHHHHTTCTTCSEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCC-EECTTTTTTCCEEEEEEEEETTCCEE
T ss_pred cCCcCCHhHhCCCccCCEEECCCCCCcccCchhhhccCCCCcEEECCCCcccc-ccCHHHccCCCCCCEEECCCCCcCcc
Confidence 9996666669999999999999999996655 589999999999999995 65 77777777999999999999999999
Q ss_pred CCccCCCCCCCCEEeccCccccccCCCCccCCCCCCeeeccccccCCcccCchhhhhhhccCCCCCEEEeecCcccCcCc
Q 005045 171 IPVSLSNASNLQVLDFAENGLTGTIPGNFGSLKDLVRLNFDQNELGSREIGDLNFLKFLANCTSLEVLGLARNSFGGEMP 250 (717)
Q Consensus 171 ~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~~~p 250 (717)
.|..+..+++|++|++++|.++...+..+..+++|+.|++++|.++..+...+. .......++.++|+++.+.+.
T Consensus 190 ~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~---~~~~~~~l~~l~L~~~~l~~~-- 264 (353)
T 2z80_A 190 EPKSLKSIQNVSHLILHMKQHILLLEIFVDVTSSVECLELRDTDLDTFHFSELS---TGETNSLIKKFTFRNVKITDE-- 264 (353)
T ss_dssp CTTTTTTCSEEEEEEEECSCSTTHHHHHHHHTTTEEEEEEESCBCTTCCCC---------CCCCCCEEEEESCBCCHH--
T ss_pred CHHHHhccccCCeecCCCCccccchhhhhhhcccccEEECCCCccccccccccc---cccccchhhccccccccccCc--
Confidence 999999999999999999999854444455689999999999999987644322 233456677777777776631
Q ss_pred hhhhhccccccEEecCCCccCCCCCccccCCCCCCEEEccCCcCccccchhhhcCCCCCeEEcccCcCCC
Q 005045 251 ISIANLSTHLRRLTMGENLMHGNIPVGIGNLVNLNLLGLEGNNLSGSVPEVIGRLNKLEGLGLNVNKFSG 320 (717)
Q Consensus 251 ~~~~~~~~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~ 320 (717)
.+. .+|..+.++++|+.|+|++|+++...+..|..+++|++|+|++|++++
T Consensus 265 ------------------~l~-~l~~~l~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N~~~~ 315 (353)
T 2z80_A 265 ------------------SLF-QVMKLLNQISGLLELEFSRNQLKSVPDGIFDRLTSLQKIWLHTNPWDC 315 (353)
T ss_dssp ------------------HHH-HHHHHHHTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCBCC
T ss_pred ------------------chh-hhHHHHhcccCCCEEECCCCCCCccCHHHHhcCCCCCEEEeeCCCccC
Confidence 111 133445556666666666666663222234666666666666666653
No 301
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.97 E-value=1.7e-30 Score=265.62 Aligned_cols=254 Identities=19% Similarity=0.170 Sum_probs=215.3
Q ss_pred cEEEcCCCcCcCCCCcCCcCCCCCCEEECCCCcccccCCcCCCCCCCCCEEEccCccccccCCccccCCCCCCEEeccCC
Q 005045 13 QDLNLTYNYLSGKIPTNLSHCTELRSFEASVNDFVGQIPNQLSSLTKLEIIGLGGSNLTGNVPAWIGNFSSLKALSLAWN 92 (717)
Q Consensus 13 ~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n 92 (717)
++++.++++++ .+|..+ .++|++|+|++|.+++..+..|.++++|++|+|++|.+++..|..|..+++|++|+|++|
T Consensus 14 ~~~~c~~~~l~-~ip~~~--~~~l~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n 90 (285)
T 1ozn_A 14 VTTSCPQQGLQ-AVPVGI--PAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDN 90 (285)
T ss_dssp CEEECCSSCCS-SCCTTC--CTTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSC
T ss_pred eEEEcCcCCcc-cCCcCC--CCCceEEEeeCCcCCccCHHHcccCCCCCEEECCCCccceeCHhhcCCccCCCEEeCCCC
Confidence 67999999998 567655 479999999999999877788999999999999999999887899999999999999999
Q ss_pred c-CcccCChhhhccCCCCeEeccCCCCCCCCCccccCCCCccEEEcccCcccccCCcccccCCCCcceeecccccccccC
Q 005045 93 N-LRGSIPNELGQLSGLGFFTLYGNFISGIIPSSIYNISSIYYFSVTQNQLHGQLPTDVGLTLPNLKIFAGAVNYFTGSI 171 (717)
Q Consensus 93 ~-l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~~l~~~~~~~l~~L~~L~l~~n~l~~~~ 171 (717)
. ++...|..|..+++|++|+|++|.+++..+..|.++++|++|+|++|.++ .++...+..+++|+.|++++|.++...
T Consensus 91 ~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~-~~~~~~~~~l~~L~~L~l~~n~l~~~~ 169 (285)
T 1ozn_A 91 AQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQ-ALPDDTFRDLGNLTHLFLHGNRISSVP 169 (285)
T ss_dssp TTCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCTTCCEEECCSSCCCEEC
T ss_pred CCccccCHHHhcCCcCCCEEECCCCcCCEECHhHhhCCcCCCEEECCCCccc-ccCHhHhccCCCccEEECCCCcccccC
Confidence 7 88777889999999999999999999888999999999999999999998 778777778999999999999999877
Q ss_pred CccCCCCCCCCEEeccCccccccCCCCccCCCCCCeeeccccccCCcccCchhhhhhhccCCCCCEEEeecCcccCcCch
Q 005045 172 PVSLSNASNLQVLDFAENGLTGTIPGNFGSLKDLVRLNFDQNELGSREIGDLNFLKFLANCTSLEVLGLARNSFGGEMPI 251 (717)
Q Consensus 172 ~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~ 251 (717)
+..|..+++|++|++++|.+++..|..|..+++|+.|++++|.++.++ +..+..+++|+.|++++|.+....+.
T Consensus 170 ~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~------~~~~~~l~~L~~L~l~~N~~~c~~~~ 243 (285)
T 1ozn_A 170 ERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALP------TEALAPLRALQYLRLNDNPWVCDCRA 243 (285)
T ss_dssp TTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCC------HHHHTTCTTCCEEECCSSCEECSGGG
T ss_pred HHHhcCccccCEEECCCCcccccCHhHccCcccccEeeCCCCcCCcCC------HHHcccCcccCEEeccCCCccCCCCc
Confidence 778999999999999999999888889999999999999999998876 67788899999999999998854433
Q ss_pred hhhhccccccEEecCCCccCCCCCccc
Q 005045 252 SIANLSTHLRRLTMGENLMHGNIPVGI 278 (717)
Q Consensus 252 ~~~~~~~~L~~L~l~~N~l~~~~~~~~ 278 (717)
... ...++.+..+.+.+....|..+
T Consensus 244 ~~~--~~~l~~~~~~~~~~~c~~p~~l 268 (285)
T 1ozn_A 244 RPL--WAWLQKFRGSSSEVPCSLPQRL 268 (285)
T ss_dssp HHH--HHHHHHCCSEECCCBEEESGGG
T ss_pred HHH--HHHHHhcccccCccccCCchHh
Confidence 211 1234444455555554444444
No 302
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.97 E-value=7.1e-31 Score=271.39 Aligned_cols=280 Identities=20% Similarity=0.256 Sum_probs=123.4
Q ss_pred cEEEcCCCcCcCCCCcCCcCCCCCCEEECCCCcccccCCcCCCCCCCCCEEEccCcccccc--CCccccCCCCCCEEecc
Q 005045 13 QDLNLTYNYLSGKIPTNLSHCTELRSFEASVNDFVGQIPNQLSSLTKLEIIGLGGSNLTGN--VPAWIGNFSSLKALSLA 90 (717)
Q Consensus 13 ~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~--~p~~~~~l~~L~~L~L~ 90 (717)
+.+++++++++ .+|..+. ++|++|+|++|.++...+..|.++++|++|+|++|.++.. .|..+..+++|++|+|+
T Consensus 10 ~~l~c~~~~l~-~ip~~~~--~~l~~L~L~~n~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~Ls 86 (306)
T 2z66_A 10 TEIRCNSKGLT-SVPTGIP--SSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLS 86 (306)
T ss_dssp TEEECCSSCCS-SCCSCCC--TTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCEEEEEEHHHHSCSCCCEEECC
T ss_pred CEEEcCCCCcc-cCCCCCC--CCCCEEECCCCccCccCHhHhhccccCCEEECCCCccCcccCcccccccccccCEEECC
Confidence 34555555554 3443332 3455555555555422222344455555555555544411 13333444444444444
Q ss_pred CCcCcccCChhhhccCCCCeEeccCCCCCCCCC-ccccCCCCccEEEcccCcccccCCcccccCCCCcceeecccccccc
Q 005045 91 WNNLRGSIPNELGQLSGLGFFTLYGNFISGIIP-SSIYNISSIYYFSVTQNQLHGQLPTDVGLTLPNLKIFAGAVNYFTG 169 (717)
Q Consensus 91 ~n~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~-~~~~~l~~L~~L~L~~N~l~~~l~~~~~~~l~~L~~L~l~~n~l~~ 169 (717)
+|.++ .+|..|..+++|++|+|++|.+++..+ ..|..+++|++|++++|.+ .+
T Consensus 87 ~n~i~-~l~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l-------------------------~~ 140 (306)
T 2z66_A 87 FNGVI-TMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHT-------------------------RV 140 (306)
T ss_dssp SCSEE-EEEEEEETCTTCCEEECTTSEEESSTTTTTTTTCTTCCEEECTTSCC-------------------------EE
T ss_pred CCccc-cChhhcCCCCCCCEEECCCCcccccccchhhhhccCCCEEECCCCcC-------------------------Cc
Confidence 44444 233334444444444444444443322 2334444444444444443 33
Q ss_pred cCCccCCCCCCCCEEeccCccccc-cCCCCccCCCCCCeeeccccccCCcccCchhhhhhhccCCCCCEEEeecCcccCc
Q 005045 170 SIPVSLSNASNLQVLDFAENGLTG-TIPGNFGSLKDLVRLNFDQNELGSREIGDLNFLKFLANCTSLEVLGLARNSFGGE 248 (717)
Q Consensus 170 ~~~~~~~~l~~L~~L~l~~N~l~~-~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~~ 248 (717)
..+..+..+++|++|++++|.+++ ..|..|..+++|+.|++++|.++.+. +..+..+++|++|+|++|.++
T Consensus 141 ~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~------~~~~~~l~~L~~L~L~~N~l~-- 212 (306)
T 2z66_A 141 AFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLS------PTAFNSLSSLQVLNMSHNNFF-- 212 (306)
T ss_dssp CSTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEEC------TTTTTTCTTCCEEECTTSCCS--
T ss_pred cchhhcccCcCCCEEECCCCccccccchhHHhhCcCCCEEECCCCCcCCcC------HHHhcCCCCCCEEECCCCccC--
Confidence 344444555555555555555543 34444444444555554444444433 233444444444444444444
Q ss_pred CchhhhhccccccEEecCCCccCCCCCccccCCCCCCEEEccCCcCccccchhhhcCC-CCCeEEcccCcCCCCCC--cc
Q 005045 249 MPISIANLSTHLRRLTMGENLMHGNIPVGIGNLVNLNLLGLEGNNLSGSVPEVIGRLN-KLEGLGLNVNKFSGLIP--SS 325 (717)
Q Consensus 249 ~p~~~~~~~~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~-~L~~L~Ls~N~l~~~~~--~~ 325 (717)
+..+..|..+++|+.|+|++|++++..|..+..++ +|++|+|++|++++.-. ..
T Consensus 213 -----------------------~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~L~~L~L~~N~~~~~c~~~~~ 269 (306)
T 2z66_A 213 -----------------------SLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFACTCEHQSF 269 (306)
T ss_dssp -----------------------BCCSGGGTTCTTCCEEECTTSCCCBCSSSSCCCCCTTCCEEECTTCCEECSGGGHHH
T ss_pred -----------------------ccChhhccCcccCCEeECCCCCCcccCHHHHHhhhccCCEEEccCCCeecccChHHH
Confidence 33333344444444444444444444444444442 44444444444443211 11
Q ss_pred cccccccceeecccccccccCCcCccC
Q 005045 326 LGNLTILTRLWMEENRLEGSIPPSLGN 352 (717)
Q Consensus 326 ~~~l~~L~~L~L~~N~l~~~~p~~~~~ 352 (717)
...+..++.+....+.+.+..|..+.+
T Consensus 270 ~~~l~~~~~~~~~~~~~~C~~p~~~~g 296 (306)
T 2z66_A 270 LQWIKDQRQLLVEVERMECATPSDKQG 296 (306)
T ss_dssp HHHHHHTGGGBSCGGGCBEEESGGGTT
T ss_pred HHHHHhhhhhhccccccccCCchhhCC
Confidence 122333444445555555555555544
No 303
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.97 E-value=3.4e-31 Score=273.81 Aligned_cols=214 Identities=20% Similarity=0.214 Sum_probs=161.4
Q ss_pred cceeeCCcc--eecEEEcCCCcCcCCCCcCCcCCCCCCEEECCCCccccc--CCcCCCCCCCCCEEEccCccccccCCcc
Q 005045 2 ELIMIPEHL--MTQDLNLTYNYLSGKIPTNLSHCTELRSFEASVNDFVGQ--IPNQLSSLTKLEIIGLGGSNLTGNVPAW 77 (717)
Q Consensus 2 ~l~~~p~~~--~~~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~--~p~~~~~l~~L~~L~L~~n~l~~~~p~~ 77 (717)
.++.+|... .+++|+|++|+++...+..|..+++|++|+|++|.++.. .|..+..+++|++|+|++|.++ .+|..
T Consensus 18 ~l~~ip~~~~~~l~~L~L~~n~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~-~l~~~ 96 (306)
T 2z66_A 18 GLTSVPTGIPSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSFNGVI-TMSSN 96 (306)
T ss_dssp CCSSCCSCCCTTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCEEEEEEHHHHSCSCCCEEECCSCSEE-EEEEE
T ss_pred CcccCCCCCCCCCCEEECCCCccCccCHhHhhccccCCEEECCCCccCcccCcccccccccccCEEECCCCccc-cChhh
Confidence 366777765 899999999999966666789999999999999999833 3666778999999999999999 67888
Q ss_pred ccCCCCCCEEeccCCcCcccCC-hhhhccCCCCeEeccCCCCCCCCCccccCCCCccEEEcccCcccccCCcccccCCCC
Q 005045 78 IGNFSSLKALSLAWNNLRGSIP-NELGQLSGLGFFTLYGNFISGIIPSSIYNISSIYYFSVTQNQLHGQLPTDVGLTLPN 156 (717)
Q Consensus 78 ~~~l~~L~~L~L~~n~l~~~~~-~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~~l~~~~~~~l~~ 156 (717)
+..+++|++|+|++|++++..+ ..|..+++|++|+|++|.+.+..+..|.++++|++|+|++|.+++..
T Consensus 97 ~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~---------- 166 (306)
T 2z66_A 97 FLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENF---------- 166 (306)
T ss_dssp EETCTTCCEEECTTSEEESSTTTTTTTTCTTCCEEECTTSCCEECSTTTTTTCTTCCEEECTTCEEGGGE----------
T ss_pred cCCCCCCCEEECCCCcccccccchhhhhccCCCEEECCCCcCCccchhhcccCcCCCEEECCCCcccccc----------
Confidence 9999999999999999996655 68999999999999999999888999999999999999999987322
Q ss_pred cceeecccccccccCCccCCCCCCCCEEeccCccccccCCCCccCCCCCCeeeccccccCCcccCchhhhhhhccCCCCC
Q 005045 157 LKIFAGAVNYFTGSIPVSLSNASNLQVLDFAENGLTGTIPGNFGSLKDLVRLNFDQNELGSREIGDLNFLKFLANCTSLE 236 (717)
Q Consensus 157 L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~l~~L~ 236 (717)
.|..+..+++|++|++++|.+++..|..|..+++|+.|++++|.++.++ +..+..+++|+
T Consensus 167 --------------~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~------~~~~~~l~~L~ 226 (306)
T 2z66_A 167 --------------LPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLD------TFPYKCLNSLQ 226 (306)
T ss_dssp --------------ECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCSBCC------SGGGTTCTTCC
T ss_pred --------------chhHHhhCcCCCEEECCCCCcCCcCHHHhcCCCCCCEEECCCCccCccC------hhhccCcccCC
Confidence 2334445555555555555555444555555555555555555555544 22334444444
Q ss_pred EEEeecCccc
Q 005045 237 VLGLARNSFG 246 (717)
Q Consensus 237 ~L~L~~N~l~ 246 (717)
.|+|++|.++
T Consensus 227 ~L~L~~N~l~ 236 (306)
T 2z66_A 227 VLDYSLNHIM 236 (306)
T ss_dssp EEECTTSCCC
T ss_pred EeECCCCCCc
Confidence 4444444444
No 304
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.97 E-value=3e-32 Score=299.11 Aligned_cols=306 Identities=16% Similarity=0.165 Sum_probs=174.1
Q ss_pred CCCEEeccCCcCcccCChhhhccCCCCeEeccCCCCCCCCCccccCCCCccEEEcccCcccccCCcccccCCCCcceeec
Q 005045 83 SLKALSLAWNNLRGSIPNELGQLSGLGFFTLYGNFISGIIPSSIYNISSIYYFSVTQNQLHGQLPTDVGLTLPNLKIFAG 162 (717)
Q Consensus 83 ~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~~l~~~~~~~l~~L~~L~l 162 (717)
+|++|+|++|.|++..|..|..+++|++|+|++|.+++..| |..+++|++|+|++|.++ .+|. .
T Consensus 35 ~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~l~-~l~~-----~-------- 98 (487)
T 3oja_A 35 NVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDLNNNYVQ-ELLV-----G-------- 98 (487)
T ss_dssp GCCEEECCSSCCCCCCGGGGTTCTTCCEEECTTSCCEEEEE--CTTCTTCCEEECCSSEEE-EEEE-----C--------
T ss_pred CccEEEeeCCcCCCCCHHHHhCCCCCCEEEeeCCCCCCCcc--cccCCCCCEEEecCCcCC-CCCC-----C--------
Confidence 56666666666665555566666666666666666654333 555666666666666555 2221 1
Q ss_pred ccccccccCCccCCCCCCCCEEeccCccccccCCCCccCCCCCCeeeccccccCCcccCchhhhhhhccCCCCCEEEeec
Q 005045 163 AVNYFTGSIPVSLSNASNLQVLDFAENGLTGTIPGNFGSLKDLVRLNFDQNELGSREIGDLNFLKFLANCTSLEVLGLAR 242 (717)
Q Consensus 163 ~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~l~~L~~L~L~~ 242 (717)
++|++|++++|.+++..+. .+++|+.|++++|.++... +..+.++++|+.|+|++
T Consensus 99 ----------------~~L~~L~L~~N~l~~~~~~---~l~~L~~L~L~~N~l~~~~------~~~~~~l~~L~~L~Ls~ 153 (487)
T 3oja_A 99 ----------------PSIETLHAANNNISRVSCS---RGQGKKNIYLANNKITMLR------DLDEGCRSRVQYLDLKL 153 (487)
T ss_dssp ----------------TTCCEEECCSSCCCCEEEC---CCSSCEEEECCSSCCCSGG------GBCGGGGSSEEEEECTT
T ss_pred ----------------CCcCEEECcCCcCCCCCcc---ccCCCCEEECCCCCCCCCC------chhhcCCCCCCEEECCC
Confidence 4555555555555543332 2345555555555555543 33445555666666666
Q ss_pred CcccCcCchhhhhccccccEEecCCCccCCCCCccccCCCCCCEEEccCCcCccccchhhhcCCCCCeEEcccCcCCCCC
Q 005045 243 NSFGGEMPISIANLSTHLRRLTMGENLMHGNIPVGIGNLVNLNLLGLEGNNLSGSVPEVIGRLNKLEGLGLNVNKFSGLI 322 (717)
Q Consensus 243 N~l~~~~p~~~~~~~~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~ 322 (717)
|.+++..|..+....++|+.|+|++|.+++. ..+..+++|+.|+|++|+|++ +|..+..+++|+.|+|++|.+++ +
T Consensus 154 N~l~~~~~~~l~~~l~~L~~L~Ls~N~l~~~--~~~~~l~~L~~L~Ls~N~l~~-~~~~~~~l~~L~~L~Ls~N~l~~-l 229 (487)
T 3oja_A 154 NEIDTVNFAELAASSDTLEHLNLQYNFIYDV--KGQVVFAKLKTLDLSSNKLAF-MGPEFQSAAGVTWISLRNNKLVL-I 229 (487)
T ss_dssp SCCCEEEGGGGGGGTTTCCEEECTTSCCCEE--ECCCCCTTCCEEECCSSCCCE-ECGGGGGGTTCSEEECTTSCCCE-E
T ss_pred CCCCCcChHHHhhhCCcccEEecCCCccccc--cccccCCCCCEEECCCCCCCC-CCHhHcCCCCccEEEecCCcCcc-c
Confidence 6666555555542224666666666666543 223347777788888887775 34447777778888888888775 4
Q ss_pred Ccccccccccceeeccccccc-ccCCcCccCcCCCceEEee-------cccCCCCCCcccccCCCCcccccccccccccc
Q 005045 323 PSSLGNLTILTRLWMEENRLE-GSIPPSLGNCQKLLVLNLS-------SNDLNGTIPKEVRQSGMSYSDISKSTDNFSKE 394 (717)
Q Consensus 323 ~~~~~~l~~L~~L~L~~N~l~-~~~p~~~~~l~~L~~L~l~-------~N~l~~~~p~~~~~~~~s~~~~~~~~~~y~~~ 394 (717)
|..+..+++|+.|+|++|.+. +.+|..+..++.|+.++++ .|+..+.+|.......
T Consensus 230 p~~l~~l~~L~~L~l~~N~l~c~~~~~~~~~l~~L~~l~~~~~~~~~~~~~~~c~~~~~~~~~~---------------- 293 (487)
T 3oja_A 230 EKALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQTVKKLTGQNEEECTVPTLGHYGA---------------- 293 (487)
T ss_dssp CTTCCCCTTCCEEECTTCCBCHHHHHHHHTTCHHHHHHHHHHHHHHTSSSSCCCSSTTCEEETT----------------
T ss_pred chhhccCCCCCEEEcCCCCCcCcchHHHHHhCCCCcEEeccccccccCCCcccccCCccccccc----------------
Confidence 556777777888888888776 4566667777777777775 4444333322211100
Q ss_pred cccCcccccceEEEEeCCCchhhhHHhHhh--hhhHHHHHHHHHHHHhcCCCCceeEEEEeecc
Q 005045 395 NLIGTGSFGSVYKGTLGDGTIVAIKVLKLQ--QQGALKSFIDECNALKSTRHRNILRVITACSS 456 (717)
Q Consensus 395 ~~ig~g~~g~v~~~~~~~~~~vavK~~~~~--~~~~~~~~~~e~~~l~~l~h~ni~~~~~~~~~ 456 (717)
++.+..+.+|. ++.+++|..... .....+.|..|++.+.+++|+|+++++++|..
T Consensus 294 --~~~~~~~~~~~-----~~l~~~~~~~~~~~~~~g~~eF~~Eve~L~~i~HrNLV~L~gyC~s 350 (487)
T 3oja_A 294 --YCCEDLPAPFA-----DRLIALKRKEHALLSGQGSETERLECERENQARQREIDALKEQYRT 350 (487)
T ss_dssp --EEECCCSCHHH-----HHHHHHHHHHHCSCC-----CHHHHHHHHHHHHHHHHHHHHHHTCC
T ss_pred --cccccccchhh-----hHHHHHHHHhhhhcccccHHHHHHHHHHHhcccccchhhHHHHhcC
Confidence 11111111111 112233322211 12235679999999999999999999998743
No 305
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.97 E-value=3.8e-30 Score=280.89 Aligned_cols=253 Identities=21% Similarity=0.206 Sum_probs=163.1
Q ss_pred CCCEEEccCccccccCCccccCCCCCCEEeccCCcCcccCChhhhccCCCCeEeccCCCCCCCCCccccCCCCccEEEcc
Q 005045 59 KLEIIGLGGSNLTGNVPAWIGNFSSLKALSLAWNNLRGSIPNELGQLSGLGFFTLYGNFISGIIPSSIYNISSIYYFSVT 138 (717)
Q Consensus 59 ~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~ 138 (717)
....++.+++.++ .+|..+. ++|++|+|++|+|++..+..|.++++|++|+|++|.|+++.+..|.++++|++|+|+
T Consensus 55 ~~~~v~c~~~~l~-~iP~~~~--~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~ 131 (452)
T 3zyi_A 55 QFSKVVCTRRGLS-EVPQGIP--SNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELF 131 (452)
T ss_dssp SSCEEECCSSCCS-SCCSCCC--TTCSEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECC
T ss_pred CCcEEEECCCCcC-ccCCCCC--CCccEEECcCCcCceECHHHcCCCCCCCEEECCCCccCCcChhhccCcccCCEEECC
Confidence 4567888888887 6666554 578888888888887777888888888888888888887777888888888888888
Q ss_pred cCcccccCCcccccCCCCcceeecccccccccCCccCCCCCCCCEEeccCccccccCCCCccCCCCCCeeeccccccCCc
Q 005045 139 QNQLHGQLPTDVGLTLPNLKIFAGAVNYFTGSIPVSLSNASNLQVLDFAENGLTGTIPGNFGSLKDLVRLNFDQNELGSR 218 (717)
Q Consensus 139 ~N~l~~~l~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~ 218 (717)
+|+++ .+|...+..+++|+.|+|++|.+....+..|.++++|++|++++| |.+..+
T Consensus 132 ~n~l~-~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~~-----------------------~~l~~i 187 (452)
T 3zyi_A 132 DNWLT-VIPSGAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLMRLDLGEL-----------------------KKLEYI 187 (452)
T ss_dssp SSCCS-BCCTTTSSSCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECCCC-----------------------TTCCEE
T ss_pred CCcCC-ccChhhhcccCCCCEEECCCCCcceeCHhHHhcCCcccEEeCCCC-----------------------CCcccc
Confidence 88887 555544444444444444444444433444444444444444442 233333
Q ss_pred ccCchhhhhhhccCCCCCEEEeecCcccCcCchhhhhccccccEEecCCCccCCCCCccccCCCCCCEEEccCCcCcccc
Q 005045 219 EIGDLNFLKFLANCTSLEVLGLARNSFGGEMPISIANLSTHLRRLTMGENLMHGNIPVGIGNLVNLNLLGLEGNNLSGSV 298 (717)
Q Consensus 219 ~~~~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~~~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~ 298 (717)
+ ...|.++++|+.|+|++|.++ .+| .+..+++|+.|+|++|++++..
T Consensus 188 ~------~~~~~~l~~L~~L~L~~n~l~-~~~--------------------------~~~~l~~L~~L~Ls~N~l~~~~ 234 (452)
T 3zyi_A 188 S------EGAFEGLFNLKYLNLGMCNIK-DMP--------------------------NLTPLVGLEELEMSGNHFPEIR 234 (452)
T ss_dssp C------TTTTTTCTTCCEEECTTSCCS-SCC--------------------------CCTTCTTCCEEECTTSCCSEEC
T ss_pred C------hhhccCCCCCCEEECCCCccc-ccc--------------------------cccccccccEEECcCCcCcccC
Confidence 2 233445555555555555555 222 1344556666666666666666
Q ss_pred chhhhcCCCCCeEEcccCcCCCCCCcccccccccceeecccccccccCCcCccCcCCCceEEeecccCCCCCC
Q 005045 299 PEVIGRLNKLEGLGLNVNKFSGLIPSSLGNLTILTRLWMEENRLEGSIPPSLGNCQKLLVLNLSSNDLNGTIP 371 (717)
Q Consensus 299 ~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p 371 (717)
|..|.++++|+.|+|++|+++++.+..|.++++|+.|+|++|++++..+..|..+++|+.|+|++|++.+.+.
T Consensus 235 ~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~Np~~CdC~ 307 (452)
T 3zyi_A 235 PGSFHGLSSLKKLWVMNSQVSLIERNAFDGLASLVELNLAHNNLSSLPHDLFTPLRYLVELHLHHNPWNCDCD 307 (452)
T ss_dssp GGGGTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTSSTTCTTCCEEECCSSCEECSTT
T ss_pred cccccCccCCCEEEeCCCcCceECHHHhcCCCCCCEEECCCCcCCccChHHhccccCCCEEEccCCCcCCCCC
Confidence 6666666677777777777766666666777777777777777765555666677777777777777765543
No 306
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.97 E-value=1e-29 Score=284.36 Aligned_cols=175 Identities=27% Similarity=0.355 Sum_probs=94.6
Q ss_pred ecEEEcCCCcCcCCCCcCCcCCCCCCEEECCCCcccccCCcCCCCCCCCCEEEccCccccccCCccccCCCCCCEEeccC
Q 005045 12 TQDLNLTYNYLSGKIPTNLSHCTELRSFEASVNDFVGQIPNQLSSLTKLEIIGLGGSNLTGNVPAWIGNFSSLKALSLAW 91 (717)
Q Consensus 12 ~~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~ 91 (717)
+++|++++|+++ .+|..+. ++|++|+|++|.++ .+|. .+++|++|+|++|+|+ .+|. .+++|++|+|++
T Consensus 42 l~~L~ls~n~L~-~lp~~l~--~~L~~L~L~~N~l~-~lp~---~l~~L~~L~Ls~N~l~-~lp~---~l~~L~~L~Ls~ 110 (622)
T 3g06_A 42 NAVLNVGESGLT-TLPDCLP--AHITTLVIPDNNLT-SLPA---LPPELRTLEVSGNQLT-SLPV---LPPGLLELSIFS 110 (622)
T ss_dssp CCEEECCSSCCS-CCCSCCC--TTCSEEEECSCCCS-CCCC---CCTTCCEEEECSCCCS-CCCC---CCTTCCEEEECS
T ss_pred CcEEEecCCCcC-ccChhhC--CCCcEEEecCCCCC-CCCC---cCCCCCEEEcCCCcCC-cCCC---CCCCCCEEECcC
Confidence 566666666666 5555554 56666666666666 4444 3556666666666666 4444 456666666666
Q ss_pred CcCcccCChhhhccCCCCeEeccCCCCCCCCCccccCCCCccEEEcccCcccccCCcccccCCCCcceeecccccccccC
Q 005045 92 NNLRGSIPNELGQLSGLGFFTLYGNFISGIIPSSIYNISSIYYFSVTQNQLHGQLPTDVGLTLPNLKIFAGAVNYFTGSI 171 (717)
Q Consensus 92 n~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~~l~~~~~~~l~~L~~L~l~~n~l~~~~ 171 (717)
|+|++ +|. .+++|++|+|++|+|+. +|.. +++|++|+|++|+++ .+|. .+++|+.|++++|.++. +
T Consensus 111 N~l~~-l~~---~l~~L~~L~L~~N~l~~-lp~~---l~~L~~L~Ls~N~l~-~l~~----~~~~L~~L~L~~N~l~~-l 176 (622)
T 3g06_A 111 NPLTH-LPA---LPSGLCKLWIFGNQLTS-LPVL---PPGLQELSVSDNQLA-SLPA----LPSELCKLWAYNNQLTS-L 176 (622)
T ss_dssp CCCCC-CCC---CCTTCCEEECCSSCCSC-CCCC---CTTCCEEECCSSCCS-CCCC----CCTTCCEEECCSSCCSC-C
T ss_pred CcCCC-CCC---CCCCcCEEECCCCCCCc-CCCC---CCCCCEEECcCCcCC-CcCC----ccCCCCEEECCCCCCCC-C
Confidence 66663 333 44566666666666664 2322 355666666666665 3432 23455555555555553 2
Q ss_pred CccCCCCCCCCEEeccCccccccCCCCccCCCCCCeeeccccccCCc
Q 005045 172 PVSLSNASNLQVLDFAENGLTGTIPGNFGSLKDLVRLNFDQNELGSR 218 (717)
Q Consensus 172 ~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~ 218 (717)
| ..+++|+.|++++|.+++ +|.. +++|+.|++++|.++.+
T Consensus 177 ~---~~~~~L~~L~Ls~N~l~~-l~~~---~~~L~~L~L~~N~l~~l 216 (622)
T 3g06_A 177 P---MLPSGLQELSVSDNQLAS-LPTL---PSELYKLWAYNNRLTSL 216 (622)
T ss_dssp C---CCCTTCCEEECCSSCCSC-CCCC---CTTCCEEECCSSCCSSC
T ss_pred c---ccCCCCcEEECCCCCCCC-CCCc---cchhhEEECcCCccccc
Confidence 2 233455555555555552 2221 24444455555544443
No 307
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.97 E-value=2.9e-30 Score=263.86 Aligned_cols=256 Identities=20% Similarity=0.165 Sum_probs=121.5
Q ss_pred CEEEccCccccccCCccccCCCCCCEEeccCCcCcccCChhhhccCCCCeEeccCCCCCCCCCccccCCCCccEEEcccC
Q 005045 61 EIIGLGGSNLTGNVPAWIGNFSSLKALSLAWNNLRGSIPNELGQLSGLGFFTLYGNFISGIIPSSIYNISSIYYFSVTQN 140 (717)
Q Consensus 61 ~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N 140 (717)
++++++++.++ .+|..+. ++|++|+|++|.+++..+..|..+++|++|+|++|.++++.+..|.++++|++|+|++|
T Consensus 14 ~~~~c~~~~l~-~ip~~~~--~~l~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n 90 (285)
T 1ozn_A 14 VTTSCPQQGLQ-AVPVGIP--AASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDN 90 (285)
T ss_dssp CEEECCSSCCS-SCCTTCC--TTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSC
T ss_pred eEEEcCcCCcc-cCCcCCC--CCceEEEeeCCcCCccCHHHcccCCCCCEEECCCCccceeCHhhcCCccCCCEEeCCCC
Confidence 34444444444 3333221 34455555555554444444444555555555555554444444555555555555555
Q ss_pred c-ccccCCcccccCCCCcceeecccccccccCCccCCCCCCCCEEeccCccccccCCCCccCCCCCCeeeccccccCCcc
Q 005045 141 Q-LHGQLPTDVGLTLPNLKIFAGAVNYFTGSIPVSLSNASNLQVLDFAENGLTGTIPGNFGSLKDLVRLNFDQNELGSRE 219 (717)
Q Consensus 141 ~-l~~~l~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~ 219 (717)
. ++ .++...+..+++|++|++++|.+.+..+..+.++++|++|++++|++++..+..|..+++|+.|++++|+++.++
T Consensus 91 ~~l~-~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~ 169 (285)
T 1ozn_A 91 AQLR-SVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVP 169 (285)
T ss_dssp TTCC-CCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCEEC
T ss_pred CCcc-ccCHHHhcCCcCCCEEECCCCcCCEECHhHhhCCcCCCEEECCCCcccccCHhHhccCCCccEEECCCCcccccC
Confidence 4 33 332222223333333333333333334444555555555555555555444444555555555555555544433
Q ss_pred cCchhhhhhhccCCCCCEEEeecCcccCcCchhhhhccccccEEecCCCccCCCCCccccCCCCCCEEEccCCcCccccc
Q 005045 220 IGDLNFLKFLANCTSLEVLGLARNSFGGEMPISIANLSTHLRRLTMGENLMHGNIPVGIGNLVNLNLLGLEGNNLSGSVP 299 (717)
Q Consensus 220 ~~~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~~~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~ 299 (717)
+..+.++++|+.|++++|.++ +..|..|.++++|+.|+|++|++++..+
T Consensus 170 ------~~~~~~l~~L~~L~l~~n~l~-------------------------~~~~~~~~~l~~L~~L~l~~n~l~~~~~ 218 (285)
T 1ozn_A 170 ------ERAFRGLHSLDRLLLHQNRVA-------------------------HVHPHAFRDLGRLMTLYLFANNLSALPT 218 (285)
T ss_dssp ------TTTTTTCTTCCEEECCSSCCC-------------------------EECTTTTTTCTTCCEEECCSSCCSCCCH
T ss_pred ------HHHhcCccccCEEECCCCccc-------------------------ccCHhHccCcccccEeeCCCCcCCcCCH
Confidence 223344444444444444444 3444455555555556666665554444
Q ss_pred hhhhcCCCCCeEEcccCcCCCCCCcccccccccceeecccccccccCCcCccC
Q 005045 300 EVIGRLNKLEGLGLNVNKFSGLIPSSLGNLTILTRLWMEENRLEGSIPPSLGN 352 (717)
Q Consensus 300 ~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~ 352 (717)
..+..+++|+.|+|++|++....+. ..-+..++.+..+.+.+.+..|..+.+
T Consensus 219 ~~~~~l~~L~~L~l~~N~~~c~~~~-~~~~~~l~~~~~~~~~~~c~~p~~l~g 270 (285)
T 1ozn_A 219 EALAPLRALQYLRLNDNPWVCDCRA-RPLWAWLQKFRGSSSEVPCSLPQRLAG 270 (285)
T ss_dssp HHHTTCTTCCEEECCSSCEECSGGG-HHHHHHHHHCCSEECCCBEEESGGGTT
T ss_pred HHcccCcccCEEeccCCCccCCCCc-HHHHHHHHhcccccCccccCCchHhCC
Confidence 4555566666666666655533211 111233444555566666566655543
No 308
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.97 E-value=9.9e-30 Score=276.63 Aligned_cols=248 Identities=21% Similarity=0.226 Sum_probs=147.3
Q ss_pred CCCEEEccCccccccCCccccCCCCCCEEeccCCcCcccCChhhhccCCCCeEeccCCCCCCCCCccccCCCCccEEEcc
Q 005045 59 KLEIIGLGGSNLTGNVPAWIGNFSSLKALSLAWNNLRGSIPNELGQLSGLGFFTLYGNFISGIIPSSIYNISSIYYFSVT 138 (717)
Q Consensus 59 ~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~ 138 (717)
..+.++.+++.++ .+|..+. ++++.|+|++|+|++..+..|.++++|++|+|++|.|+.+.+..|.++++|++|+|+
T Consensus 44 ~~~~v~c~~~~l~-~iP~~~~--~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~ 120 (440)
T 3zyj_A 44 QFSKVICVRKNLR-EVPDGIS--TNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELF 120 (440)
T ss_dssp TSCEEECCSCCCS-SCCSCCC--TTCSEEECCSCCCCEECTTTTSSCSSCCEEECCSSCCCEECGGGGTTCSSCCEEECC
T ss_pred CCCEEEeCCCCcC-cCCCCCC--CCCcEEEccCCcCCeeCHHHhhCCCCCCEEECCCCcCCccChhhccCCccCCEEECC
Confidence 3456667776666 5565554 566777777777776666667777777777777777776666667777777777777
Q ss_pred cCcccccCCcccccCCCCcceeecccccccccCCccCCCCCCCCEEeccC-ccccccCCCCccCCCCCCeeeccccccCC
Q 005045 139 QNQLHGQLPTDVGLTLPNLKIFAGAVNYFTGSIPVSLSNASNLQVLDFAE-NGLTGTIPGNFGSLKDLVRLNFDQNELGS 217 (717)
Q Consensus 139 ~N~l~~~l~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~-N~l~~~~~~~~~~l~~L~~L~l~~N~l~~ 217 (717)
+|+++ .++...+..+++|+.|++++|.+....+..|..+++|++|++++ |.++...+..|..+++|+.|++++|.++.
T Consensus 121 ~n~l~-~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~ 199 (440)
T 3zyj_A 121 DNRLT-TIPNGAFVYLSKLKELWLRNNPIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLRE 199 (440)
T ss_dssp SSCCS-SCCTTTSCSCSSCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCSSCCEEECTTSCCSS
T ss_pred CCcCC-eeCHhHhhccccCceeeCCCCcccccCHHHhhhCcccCEeCCCCCCCcceeCcchhhcccccCeecCCCCcCcc
Confidence 77776 55555555566666666666666655555666666666666666 34443334455566666666666665554
Q ss_pred cccCchhhhhhhccCCCCCEEEeecCcccCcCchhhhhccccccEEecCCCccCCCCCccccCCCCCCEEEccCCcCccc
Q 005045 218 REIGDLNFLKFLANCTSLEVLGLARNSFGGEMPISIANLSTHLRRLTMGENLMHGNIPVGIGNLVNLNLLGLEGNNLSGS 297 (717)
Q Consensus 218 ~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~~~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~ 297 (717)
++ .+..+++|++|+|++|.+ ++..+..|.++++|+.|+|++|++++.
T Consensus 200 ~~--------~~~~l~~L~~L~Ls~N~l-------------------------~~~~~~~~~~l~~L~~L~L~~n~l~~~ 246 (440)
T 3zyj_A 200 IP--------NLTPLIKLDELDLSGNHL-------------------------SAIRPGSFQGLMHLQKLWMIQSQIQVI 246 (440)
T ss_dssp CC--------CCTTCSSCCEEECTTSCC-------------------------CEECTTTTTTCTTCCEEECTTCCCCEE
T ss_pred cc--------ccCCCcccCEEECCCCcc-------------------------CccChhhhccCccCCEEECCCCceeEE
Confidence 42 133444444444444444 444444555555555555555555555
Q ss_pred cchhhhcCCCCCeEEcccCcCCCCCCcccccccccceeeccccccc
Q 005045 298 VPEVIGRLNKLEGLGLNVNKFSGLIPSSLGNLTILTRLWMEENRLE 343 (717)
Q Consensus 298 ~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~ 343 (717)
.+..|.++++|+.|+|++|+++++.+..|..+++|+.|+|++|++.
T Consensus 247 ~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~Np~~ 292 (440)
T 3zyj_A 247 ERNAFDNLQSLVEINLAHNNLTLLPHDLFTPLHHLERIHLHHNPWN 292 (440)
T ss_dssp CTTSSTTCTTCCEEECTTSCCCCCCTTTTSSCTTCCEEECCSSCEE
T ss_pred ChhhhcCCCCCCEEECCCCCCCccChhHhccccCCCEEEcCCCCcc
Confidence 5555555555555555555555555555555555555555555554
No 309
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.97 E-value=9.3e-30 Score=276.81 Aligned_cols=248 Identities=23% Similarity=0.221 Sum_probs=220.7
Q ss_pred ecEEEcCCCcCcCCCCcCCcCCCCCCEEECCCCcccccCCcCCCCCCCCCEEEccCccccccCCccccCCCCCCEEeccC
Q 005045 12 TQDLNLTYNYLSGKIPTNLSHCTELRSFEASVNDFVGQIPNQLSSLTKLEIIGLGGSNLTGNVPAWIGNFSSLKALSLAW 91 (717)
Q Consensus 12 ~~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~ 91 (717)
...++.++++++ .+|..+. ++++.|+|++|.+++..+..|.++++|++|+|++|.|++..+..|.++++|++|+|++
T Consensus 45 ~~~v~c~~~~l~-~iP~~~~--~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~ 121 (440)
T 3zyj_A 45 FSKVICVRKNLR-EVPDGIS--TNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFD 121 (440)
T ss_dssp SCEEECCSCCCS-SCCSCCC--TTCSEEECCSCCCCEECTTTTSSCSSCCEEECCSSCCCEECGGGGTTCSSCCEEECCS
T ss_pred CCEEEeCCCCcC-cCCCCCC--CCCcEEEccCCcCCeeCHHHhhCCCCCCEEECCCCcCCccChhhccCCccCCEEECCC
Confidence 468899999998 6787665 7899999999999988888999999999999999999987788999999999999999
Q ss_pred CcCcccCChhhhccCCCCeEeccCCCCCCCCCccccCCCCccEEEcccCcccccCCcccccCCCCcceeecccccccccC
Q 005045 92 NNLRGSIPNELGQLSGLGFFTLYGNFISGIIPSSIYNISSIYYFSVTQNQLHGQLPTDVGLTLPNLKIFAGAVNYFTGSI 171 (717)
Q Consensus 92 n~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~~l~~~~~~~l~~L~~L~l~~n~l~~~~ 171 (717)
|+|+...+..|..+++|++|+|++|.|+.+.+..|.++++|++|+|++|+..+.++...+..+++|+.|++++|.++. +
T Consensus 122 n~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~-~ 200 (440)
T 3zyj_A 122 NRLTTIPNGAFVYLSKLKELWLRNNPIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLRE-I 200 (440)
T ss_dssp SCCSSCCTTTSCSCSSCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCSSCCEEECTTSCCSS-C
T ss_pred CcCCeeCHhHhhccccCceeeCCCCcccccCHHHhhhCcccCEeCCCCCCCcceeCcchhhcccccCeecCCCCcCcc-c
Confidence 999977777899999999999999999988888999999999999999654458888888899999999999999984 3
Q ss_pred CccCCCCCCCCEEeccCccccccCCCCccCCCCCCeeeccccccCCcccCchhhhhhhccCCCCCEEEeecCcccCcCch
Q 005045 172 PVSLSNASNLQVLDFAENGLTGTIPGNFGSLKDLVRLNFDQNELGSREIGDLNFLKFLANCTSLEVLGLARNSFGGEMPI 251 (717)
Q Consensus 172 ~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~ 251 (717)
| .+..+++|++|+|++|++++..|..|..+++|+.|++++|+|+.+. +..|.++++|+.|+|++|++++..+.
T Consensus 201 ~-~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~------~~~~~~l~~L~~L~L~~N~l~~~~~~ 273 (440)
T 3zyj_A 201 P-NLTPLIKLDELDLSGNHLSAIRPGSFQGLMHLQKLWMIQSQIQVIE------RNAFDNLQSLVEINLAHNNLTLLPHD 273 (440)
T ss_dssp C-CCTTCSSCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEEC------TTSSTTCTTCCEEECTTSCCCCCCTT
T ss_pred c-ccCCCcccCEEECCCCccCccChhhhccCccCCEEECCCCceeEEC------hhhhcCCCCCCEEECCCCCCCccChh
Confidence 4 5889999999999999999888999999999999999999999887 67788999999999999999954455
Q ss_pred hhhhccccccEEecCCCccC
Q 005045 252 SIANLSTHLRRLTMGENLMH 271 (717)
Q Consensus 252 ~~~~~~~~L~~L~l~~N~l~ 271 (717)
.+..+ ++|+.|+|++|.+.
T Consensus 274 ~~~~l-~~L~~L~L~~Np~~ 292 (440)
T 3zyj_A 274 LFTPL-HHLERIHLHHNPWN 292 (440)
T ss_dssp TTSSC-TTCCEEECCSSCEE
T ss_pred Hhccc-cCCCEEEcCCCCcc
Confidence 55555 69999999999986
No 310
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.97 E-value=9e-30 Score=277.96 Aligned_cols=248 Identities=21% Similarity=0.191 Sum_probs=219.6
Q ss_pred ecEEEcCCCcCcCCCCcCCcCCCCCCEEECCCCcccccCCcCCCCCCCCCEEEccCccccccCCccccCCCCCCEEeccC
Q 005045 12 TQDLNLTYNYLSGKIPTNLSHCTELRSFEASVNDFVGQIPNQLSSLTKLEIIGLGGSNLTGNVPAWIGNFSSLKALSLAW 91 (717)
Q Consensus 12 ~~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~ 91 (717)
...++.++++++ .+|..+. ++|++|+|++|.+++..|..|.++++|++|+|++|.|++..|..|.++++|++|+|++
T Consensus 56 ~~~v~c~~~~l~-~iP~~~~--~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~ 132 (452)
T 3zyi_A 56 FSKVVCTRRGLS-EVPQGIP--SNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFD 132 (452)
T ss_dssp SCEEECCSSCCS-SCCSCCC--TTCSEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCS
T ss_pred CcEEEECCCCcC-ccCCCCC--CCccEEECcCCcCceECHHHcCCCCCCCEEECCCCccCCcChhhccCcccCCEEECCC
Confidence 467899999998 6777665 6899999999999988889999999999999999999988888999999999999999
Q ss_pred CcCcccCChhhhccCCCCeEeccCCCCCCCCCccccCCCCccEEEcccCcccccCCcccccCCCCcceeecccccccccC
Q 005045 92 NNLRGSIPNELGQLSGLGFFTLYGNFISGIIPSSIYNISSIYYFSVTQNQLHGQLPTDVGLTLPNLKIFAGAVNYFTGSI 171 (717)
Q Consensus 92 n~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~~l~~~~~~~l~~L~~L~l~~n~l~~~~ 171 (717)
|+|+...+..|.++++|++|+|++|.|+.+.+..|.++++|++|+|++|+..+.++...+..+++|+.|++++|.+++.
T Consensus 133 n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~~- 211 (452)
T 3zyi_A 133 NWLTVIPSGAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIKDM- 211 (452)
T ss_dssp SCCSBCCTTTSSSCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCTTCCEEECTTSCCSSC-
T ss_pred CcCCccChhhhcccCCCCEEECCCCCcceeCHhHHhcCCcccEEeCCCCCCccccChhhccCCCCCCEEECCCCccccc-
Confidence 9999777788999999999999999999888889999999999999995544488888888999999999999999854
Q ss_pred CccCCCCCCCCEEeccCccccccCCCCccCCCCCCeeeccccccCCcccCchhhhhhhccCCCCCEEEeecCcccCcCch
Q 005045 172 PVSLSNASNLQVLDFAENGLTGTIPGNFGSLKDLVRLNFDQNELGSREIGDLNFLKFLANCTSLEVLGLARNSFGGEMPI 251 (717)
Q Consensus 172 ~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~ 251 (717)
| .+..+++|++|+|++|.+++..|..|..+++|+.|++++|+++.+. +..|.++++|+.|+|++|++++..+.
T Consensus 212 ~-~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~------~~~~~~l~~L~~L~L~~N~l~~~~~~ 284 (452)
T 3zyi_A 212 P-NLTPLVGLEELEMSGNHFPEIRPGSFHGLSSLKKLWVMNSQVSLIE------RNAFDGLASLVELNLAHNNLSSLPHD 284 (452)
T ss_dssp C-CCTTCTTCCEEECTTSCCSEECGGGGTTCTTCCEEECTTSCCCEEC------TTTTTTCTTCCEEECCSSCCSCCCTT
T ss_pred c-cccccccccEEECcCCcCcccCcccccCccCCCEEEeCCCcCceEC------HHHhcCCCCCCEEECCCCcCCccChH
Confidence 3 5889999999999999999888999999999999999999999887 67788999999999999999944444
Q ss_pred hhhhccccccEEecCCCccC
Q 005045 252 SIANLSTHLRRLTMGENLMH 271 (717)
Q Consensus 252 ~~~~~~~~L~~L~l~~N~l~ 271 (717)
.+..+ ++|+.|+|++|.+.
T Consensus 285 ~~~~l-~~L~~L~L~~Np~~ 303 (452)
T 3zyi_A 285 LFTPL-RYLVELHLHHNPWN 303 (452)
T ss_dssp SSTTC-TTCCEEECCSSCEE
T ss_pred Hhccc-cCCCEEEccCCCcC
Confidence 45555 69999999999886
No 311
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.97 E-value=2.8e-29 Score=280.80 Aligned_cols=269 Identities=24% Similarity=0.281 Sum_probs=230.9
Q ss_pred CCCCEEECCCCcccccCCcCCCCCCCCCEEEccCccccccCCccccCCCCCCEEeccCCcCcccCChhhhccCCCCeEec
Q 005045 34 TELRSFEASVNDFVGQIPNQLSSLTKLEIIGLGGSNLTGNVPAWIGNFSSLKALSLAWNNLRGSIPNELGQLSGLGFFTL 113 (717)
Q Consensus 34 ~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 113 (717)
.+++.|++++|.++ .+|..+. ++|++|+|++|.|+ .+|. .+++|++|+|++|+|+ .+|. .+++|++|+|
T Consensus 40 ~~l~~L~ls~n~L~-~lp~~l~--~~L~~L~L~~N~l~-~lp~---~l~~L~~L~Ls~N~l~-~lp~---~l~~L~~L~L 108 (622)
T 3g06_A 40 NGNAVLNVGESGLT-TLPDCLP--AHITTLVIPDNNLT-SLPA---LPPELRTLEVSGNQLT-SLPV---LPPGLLELSI 108 (622)
T ss_dssp HCCCEEECCSSCCS-CCCSCCC--TTCSEEEECSCCCS-CCCC---CCTTCCEEEECSCCCS-CCCC---CCTTCCEEEE
T ss_pred CCCcEEEecCCCcC-ccChhhC--CCCcEEEecCCCCC-CCCC---cCCCCCEEEcCCCcCC-cCCC---CCCCCCEEEC
Confidence 35899999999999 7887776 79999999999999 6666 5789999999999999 5665 7899999999
Q ss_pred cCCCCCCCCCccccCCCCccEEEcccCcccccCCcccccCCCCcceeecccccccccCCccCCCCCCCCEEeccCccccc
Q 005045 114 YGNFISGIIPSSIYNISSIYYFSVTQNQLHGQLPTDVGLTLPNLKIFAGAVNYFTGSIPVSLSNASNLQVLDFAENGLTG 193 (717)
Q Consensus 114 ~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~~l~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~ 193 (717)
++|+|+++.. .+++|+.|++++|+++ .+|. .+++|++|++++|.+++. |. .+++|+.|++++|.+++
T Consensus 109 s~N~l~~l~~----~l~~L~~L~L~~N~l~-~lp~----~l~~L~~L~Ls~N~l~~l-~~---~~~~L~~L~L~~N~l~~ 175 (622)
T 3g06_A 109 FSNPLTHLPA----LPSGLCKLWIFGNQLT-SLPV----LPPGLQELSVSDNQLASL-PA---LPSELCKLWAYNNQLTS 175 (622)
T ss_dssp CSCCCCCCCC----CCTTCCEEECCSSCCS-CCCC----CCTTCCEEECCSSCCSCC-CC---CCTTCCEEECCSSCCSC
T ss_pred cCCcCCCCCC----CCCCcCEEECCCCCCC-cCCC----CCCCCCEEECcCCcCCCc-CC---ccCCCCEEECCCCCCCC
Confidence 9999996543 6789999999999998 6776 358999999999999963 43 35789999999999994
Q ss_pred cCCCCccCCCCCCeeeccccccCCcccCchhhhhhhccCCCCCEEEeecCcccCcCchhhhhccccccEEecCCCccCCC
Q 005045 194 TIPGNFGSLKDLVRLNFDQNELGSREIGDLNFLKFLANCTSLEVLGLARNSFGGEMPISIANLSTHLRRLTMGENLMHGN 273 (717)
Q Consensus 194 ~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~~~~L~~L~l~~N~l~~~ 273 (717)
+| ..+++|+.|++++|.|+.++. .+++|+.|++++|.++ .+|.. .++|+.|++++|.+++
T Consensus 176 -l~---~~~~~L~~L~Ls~N~l~~l~~----------~~~~L~~L~L~~N~l~-~l~~~----~~~L~~L~Ls~N~L~~- 235 (622)
T 3g06_A 176 -LP---MLPSGLQELSVSDNQLASLPT----------LPSELYKLWAYNNRLT-SLPAL----PSGLKELIVSGNRLTS- 235 (622)
T ss_dssp -CC---CCCTTCCEEECCSSCCSCCCC----------CCTTCCEEECCSSCCS-SCCCC----CTTCCEEECCSSCCSC-
T ss_pred -Cc---ccCCCCcEEECCCCCCCCCCC----------ccchhhEEECcCCccc-ccCCC----CCCCCEEEccCCccCc-
Confidence 55 457899999999999998751 3479999999999999 66643 2589999999999995
Q ss_pred CCccccCCCCCCEEEccCCcCccccchhhhcCCCCCeEEcccCcCCCCCCcccccccccceeecccccccccCCcCccCc
Q 005045 274 IPVGIGNLVNLNLLGLEGNNLSGSVPEVIGRLNKLEGLGLNVNKFSGLIPSSLGNLTILTRLWMEENRLEGSIPPSLGNC 353 (717)
Q Consensus 274 ~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l 353 (717)
+| ..+++|+.|+|++|+|+ .+|. .+++|+.|+|++|+|+ .+|..|.++++|+.|+|++|++++..|..+..+
T Consensus 236 lp---~~l~~L~~L~Ls~N~L~-~lp~---~~~~L~~L~Ls~N~L~-~lp~~l~~l~~L~~L~L~~N~l~~~~~~~l~~L 307 (622)
T 3g06_A 236 LP---VLPSELKELMVSGNRLT-SLPM---LPSGLLSLSVYRNQLT-RLPESLIHLSSETTVNLEGNPLSERTLQALREI 307 (622)
T ss_dssp CC---CCCTTCCEEECCSSCCS-CCCC---CCTTCCEEECCSSCCC-SCCGGGGGSCTTCEEECCSCCCCHHHHHHHHHH
T ss_pred CC---CCCCcCcEEECCCCCCC-cCCc---ccccCcEEeCCCCCCC-cCCHHHhhccccCEEEecCCCCCCcCHHHHHhc
Confidence 55 55689999999999999 5665 6789999999999999 558889999999999999999998888877665
Q ss_pred C
Q 005045 354 Q 354 (717)
Q Consensus 354 ~ 354 (717)
+
T Consensus 308 ~ 308 (622)
T 3g06_A 308 T 308 (622)
T ss_dssp H
T ss_pred c
Confidence 5
No 312
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.96 E-value=5.1e-29 Score=259.27 Aligned_cols=234 Identities=21% Similarity=0.249 Sum_probs=117.5
Q ss_pred CCCCEEEccCccccccCCccccCCCCCCEEeccCCcCcccCChhhhccCCCCeEeccCCCCCCCCCccccCCCCccEEEc
Q 005045 58 TKLEIIGLGGSNLTGNVPAWIGNFSSLKALSLAWNNLRGSIPNELGQLSGLGFFTLYGNFISGIIPSSIYNISSIYYFSV 137 (717)
Q Consensus 58 ~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L 137 (717)
.+++.|+|++|.++ .+|..+..+++|++|+|++|.++ .+|..|..+++|++|+|++|.++ .+|..|.++++|++|+|
T Consensus 81 ~~l~~L~L~~n~l~-~lp~~l~~l~~L~~L~L~~n~l~-~lp~~~~~l~~L~~L~Ls~n~l~-~lp~~l~~l~~L~~L~L 157 (328)
T 4fcg_A 81 PGRVALELRSVPLP-QFPDQAFRLSHLQHMTIDAAGLM-ELPDTMQQFAGLETLTLARNPLR-ALPASIASLNRLRELSI 157 (328)
T ss_dssp TTCCEEEEESSCCS-SCCSCGGGGTTCSEEEEESSCCC-CCCSCGGGGTTCSEEEEESCCCC-CCCGGGGGCTTCCEEEE
T ss_pred cceeEEEccCCCch-hcChhhhhCCCCCEEECCCCCcc-chhHHHhccCCCCEEECCCCccc-cCcHHHhcCcCCCEEEC
Confidence 45556666666665 45555555566666666666665 55555555666666666666555 44555555555555555
Q ss_pred ccCcccccCCcccccCCCCcceeecccccccccCCccCCCCCCCCEEeccCccccccCCCCccCCCCCCeeeccccccCC
Q 005045 138 TQNQLHGQLPTDVGLTLPNLKIFAGAVNYFTGSIPVSLSNASNLQVLDFAENGLTGTIPGNFGSLKDLVRLNFDQNELGS 217 (717)
Q Consensus 138 ~~N~l~~~l~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~ 217 (717)
++|++.+.+|..+.. . ..+..|.++++|++|++++|+++ .+|.
T Consensus 158 ~~n~~~~~~p~~~~~-------~---------~~~~~~~~l~~L~~L~L~~n~l~-~lp~-------------------- 200 (328)
T 4fcg_A 158 RACPELTELPEPLAS-------T---------DASGEHQGLVNLQSLRLEWTGIR-SLPA-------------------- 200 (328)
T ss_dssp EEETTCCCCCSCSEE-------E---------C-CCCEEESTTCCEEEEEEECCC-CCCG--------------------
T ss_pred CCCCCccccChhHhh-------c---------cchhhhccCCCCCEEECcCCCcC-cchH--------------------
Confidence 555544444433220 0 01112223333333333333333 2222
Q ss_pred cccCchhhhhhhccCCCCCEEEeecCcccCcCchhhhhccccccEEecCCCccCCCCCccccCCCCCCEEEccCCcCccc
Q 005045 218 REIGDLNFLKFLANCTSLEVLGLARNSFGGEMPISIANLSTHLRRLTMGENLMHGNIPVGIGNLVNLNLLGLEGNNLSGS 297 (717)
Q Consensus 218 ~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~~~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~ 297 (717)
.+.++++|++|+|++|.++ .+|..+..+ ++|++|++++|.+.+.+|..|.++++|+.|+|++|++.+.
T Consensus 201 ----------~l~~l~~L~~L~L~~N~l~-~l~~~l~~l-~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~ 268 (328)
T 4fcg_A 201 ----------SIANLQNLKSLKIRNSPLS-ALGPAIHHL-PKLEELDLRGCTALRNYPPIFGGRAPLKRLILKDCSNLLT 268 (328)
T ss_dssp ----------GGGGCTTCCEEEEESSCCC-CCCGGGGGC-TTCCEEECTTCTTCCBCCCCTTCCCCCCEEECTTCTTCCB
T ss_pred ----------hhcCCCCCCEEEccCCCCC-cCchhhccC-CCCCEEECcCCcchhhhHHHhcCCCCCCEEECCCCCchhh
Confidence 2444444555555555554 333334333 2455555555444444555555555555555555555555
Q ss_pred cchhhhcCCCCCeEEcccCcCCCCCCcccccccccceeeccccccc
Q 005045 298 VPEVIGRLNKLEGLGLNVNKFSGLIPSSLGNLTILTRLWMEENRLE 343 (717)
Q Consensus 298 ~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~ 343 (717)
+|..+..+++|++|+|++|++.+.+|..++.+++|+.+++..|.+.
T Consensus 269 ~p~~~~~l~~L~~L~L~~n~~~~~iP~~l~~L~~L~~l~l~~~~~~ 314 (328)
T 4fcg_A 269 LPLDIHRLTQLEKLDLRGCVNLSRLPSLIAQLPANCIILVPPHLQA 314 (328)
T ss_dssp CCTTGGGCTTCCEEECTTCTTCCCCCGGGGGSCTTCEEECCGGGSC
T ss_pred cchhhhcCCCCCEEeCCCCCchhhccHHHhhccCceEEeCCHHHHH
Confidence 5555555555555555555555555555555555555555544443
No 313
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.96 E-value=3.1e-29 Score=260.95 Aligned_cols=236 Identities=20% Similarity=0.248 Sum_probs=175.3
Q ss_pred CCCCCEEECCCCcccccCCcCCCCCCCCCEEEccCccccccCCccccCCCCCCEEeccCCcCcccCChhhhccCCCCeEe
Q 005045 33 CTELRSFEASVNDFVGQIPNQLSSLTKLEIIGLGGSNLTGNVPAWIGNFSSLKALSLAWNNLRGSIPNELGQLSGLGFFT 112 (717)
Q Consensus 33 l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ 112 (717)
.++++.|+|++|.++ .+|..+.++++|++|+|++|.++ .+|..++.+++|++|+|++|+++ .+|..|..+++|++|+
T Consensus 80 ~~~l~~L~L~~n~l~-~lp~~l~~l~~L~~L~L~~n~l~-~lp~~~~~l~~L~~L~Ls~n~l~-~lp~~l~~l~~L~~L~ 156 (328)
T 4fcg_A 80 QPGRVALELRSVPLP-QFPDQAFRLSHLQHMTIDAAGLM-ELPDTMQQFAGLETLTLARNPLR-ALPASIASLNRLRELS 156 (328)
T ss_dssp STTCCEEEEESSCCS-SCCSCGGGGTTCSEEEEESSCCC-CCCSCGGGGTTCSEEEEESCCCC-CCCGGGGGCTTCCEEE
T ss_pred ccceeEEEccCCCch-hcChhhhhCCCCCEEECCCCCcc-chhHHHhccCCCCEEECCCCccc-cCcHHHhcCcCCCEEE
Confidence 478999999999999 88988999999999999999999 89999999999999999999999 8899999999999999
Q ss_pred ccCCCCCCCCCccccCCCCccEEEcccCcccccCCcccccCCCCcceeecccccccccCCccCCCCCCCCEEeccCcccc
Q 005045 113 LYGNFISGIIPSSIYNISSIYYFSVTQNQLHGQLPTDVGLTLPNLKIFAGAVNYFTGSIPVSLSNASNLQVLDFAENGLT 192 (717)
Q Consensus 113 L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~~l~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~ 192 (717)
|++|++.+..|..+... .+. ..+..+++|+.|++++|.++ .+|..+..+++|++|++++|.++
T Consensus 157 L~~n~~~~~~p~~~~~~-----------~~~-----~~~~~l~~L~~L~L~~n~l~-~lp~~l~~l~~L~~L~L~~N~l~ 219 (328)
T 4fcg_A 157 IRACPELTELPEPLAST-----------DAS-----GEHQGLVNLQSLRLEWTGIR-SLPASIANLQNLKSLKIRNSPLS 219 (328)
T ss_dssp EEEETTCCCCCSCSEEE-----------C-C-----CCEEESTTCCEEEEEEECCC-CCCGGGGGCTTCCEEEEESSCCC
T ss_pred CCCCCCccccChhHhhc-----------cch-----hhhccCCCCCEEECcCCCcC-cchHhhcCCCCCCEEEccCCCCC
Confidence 99999888888876541 010 11224555555555555555 56677888999999999999999
Q ss_pred ccCCCCccCCCCCCeeeccccccCCcccCchhhhhhhccCCCCCEEEeecCcccCcCchhhhhccccccEEecCCCccCC
Q 005045 193 GTIPGNFGSLKDLVRLNFDQNELGSREIGDLNFLKFLANCTSLEVLGLARNSFGGEMPISIANLSTHLRRLTMGENLMHG 272 (717)
Q Consensus 193 ~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~~~~L~~L~l~~N~l~~ 272 (717)
+ +|..+..+++|+.|++++|.+.. .+|..+..+ ++|++|++++|.+.+
T Consensus 220 ~-l~~~l~~l~~L~~L~Ls~n~~~~------------------------------~~p~~~~~l-~~L~~L~L~~n~~~~ 267 (328)
T 4fcg_A 220 A-LGPAIHHLPKLEELDLRGCTALR------------------------------NYPPIFGGR-APLKRLILKDCSNLL 267 (328)
T ss_dssp C-CCGGGGGCTTCCEEECTTCTTCC------------------------------BCCCCTTCC-CCCCEEECTTCTTCC
T ss_pred c-CchhhccCCCCCEEECcCCcchh------------------------------hhHHHhcCC-CCCCEEECCCCCchh
Confidence 4 55556666666666666555544 444444444 255555555555555
Q ss_pred CCCccccCCCCCCEEEccCCcCccccchhhhcCCCCCeEEcccCcCCC
Q 005045 273 NIPVGIGNLVNLNLLGLEGNNLSGSVPEVIGRLNKLEGLGLNVNKFSG 320 (717)
Q Consensus 273 ~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~ 320 (717)
.+|..+.++++|+.|+|++|++.+.+|..++.+++|+.+++..|.+..
T Consensus 268 ~~p~~~~~l~~L~~L~L~~n~~~~~iP~~l~~L~~L~~l~l~~~~~~~ 315 (328)
T 4fcg_A 268 TLPLDIHRLTQLEKLDLRGCVNLSRLPSLIAQLPANCIILVPPHLQAQ 315 (328)
T ss_dssp BCCTTGGGCTTCCEEECTTCTTCCCCCGGGGGSCTTCEEECCGGGSCC
T ss_pred hcchhhhcCCCCCEEeCCCCCchhhccHHHhhccCceEEeCCHHHHHH
Confidence 566666666677777777776666777777777777777776665543
No 314
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.96 E-value=3e-31 Score=275.32 Aligned_cols=257 Identities=17% Similarity=0.207 Sum_probs=134.3
Q ss_pred CCEEEccCccccccCCccccCCCCCCEEeccCCcCcccCChhhhccCCCCeEeccCCCCCCCCCccccCCCCccEEEccc
Q 005045 60 LEIIGLGGSNLTGNVPAWIGNFSSLKALSLAWNNLRGSIPNELGQLSGLGFFTLYGNFISGIIPSSIYNISSIYYFSVTQ 139 (717)
Q Consensus 60 L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~ 139 (717)
++.++++++.+...+...+..+++|++|+|++|+|++..|..|.++++|++|+|++|.+++..+ |..+++|++|+|++
T Consensus 12 l~i~~ls~~~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~--~~~l~~L~~L~Ls~ 89 (317)
T 3o53_A 12 YKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDLNN 89 (317)
T ss_dssp EEEESCCTTTHHHHHHHHHTTGGGCSEEECTTSCCCCCCHHHHTTCTTCCEEECTTSCCEEEEE--ETTCTTCCEEECCS
T ss_pred eeEeeccccchhhhHHHHhccCCCCCEEECcCCccCcCCHHHhhCCCcCCEEECCCCcCCcchh--hhhcCCCCEEECcC
Confidence 3344555555554444444445556666666666665555556666666666666666654332 56666666666666
Q ss_pred CcccccCCcccccCCCCcceeecccccccccCCccCCCCCCCCEEeccCccccccCCCCccCCCCCCeeeccccccCCcc
Q 005045 140 NQLHGQLPTDVGLTLPNLKIFAGAVNYFTGSIPVSLSNASNLQVLDFAENGLTGTIPGNFGSLKDLVRLNFDQNELGSRE 219 (717)
Q Consensus 140 N~l~~~l~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~ 219 (717)
|.++ .++ ..++|+.|++++|.+++..+.. +++|++|++++|++++..+..|..+++|+.|++++|.++.+.
T Consensus 90 n~l~-~l~-----~~~~L~~L~l~~n~l~~~~~~~---~~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~ 160 (317)
T 3o53_A 90 NYVQ-ELL-----VGPSIETLHAANNNISRVSCSR---GQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVN 160 (317)
T ss_dssp SEEE-EEE-----ECTTCCEEECCSSCCSEEEECC---CSSCEEEECCSSCCCSGGGBCTGGGSSEEEEECTTSCCCEEE
T ss_pred Cccc-ccc-----CCCCcCEEECCCCccCCcCccc---cCCCCEEECCCCCCCCccchhhhccCCCCEEECCCCCCCccc
Confidence 6665 332 1245555555555555443332 355666666666666555555666666666666666665544
Q ss_pred cCchhhhhhh-ccCCCCCEEEeecCcccCcCchhhhhccccccEEecCCCccCCCCCccccCCCCCCEEEccCCcCcccc
Q 005045 220 IGDLNFLKFL-ANCTSLEVLGLARNSFGGEMPISIANLSTHLRRLTMGENLMHGNIPVGIGNLVNLNLLGLEGNNLSGSV 298 (717)
Q Consensus 220 ~~~~~~~~~~-~~l~~L~~L~L~~N~l~~~~p~~~~~~~~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~ 298 (717)
+..+ ..+++|++|+|++|.++ .++.... + ++|++|++++|.+++ ++..+..+++|+.|+|++|+++ .+
T Consensus 161 ------~~~~~~~l~~L~~L~L~~N~l~-~~~~~~~-l-~~L~~L~Ls~N~l~~-l~~~~~~l~~L~~L~L~~N~l~-~l 229 (317)
T 3o53_A 161 ------FAELAASSDTLEHLNLQYNFIY-DVKGQVV-F-AKLKTLDLSSNKLAF-MGPEFQSAAGVTWISLRNNKLV-LI 229 (317)
T ss_dssp ------GGGGGGGTTTCCEEECTTSCCC-EEECCCC-C-TTCCEEECCSSCCCE-ECGGGGGGTTCSEEECTTSCCC-EE
T ss_pred ------HHHHhhccCcCCEEECCCCcCc-ccccccc-c-ccCCEEECCCCcCCc-chhhhcccCcccEEECcCCccc-ch
Confidence 2222 34556666666666655 2222211 2 345555555555543 2223444555555555555555 34
Q ss_pred chhhhcCCCCCeEEcccCcCC-CCCCcccccccccceeecc
Q 005045 299 PEVIGRLNKLEGLGLNVNKFS-GLIPSSLGNLTILTRLWME 338 (717)
Q Consensus 299 ~~~~~~l~~L~~L~Ls~N~l~-~~~~~~~~~l~~L~~L~L~ 338 (717)
|..+..+++|+.|+|++|+++ +..+..+..+++|+.|+++
T Consensus 230 ~~~~~~l~~L~~L~l~~N~~~~~~~~~~~~~~~~L~~l~l~ 270 (317)
T 3o53_A 230 EKALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQ 270 (317)
T ss_dssp CTTCCCCTTCCEEECTTCCCBHHHHHHHHHTCHHHHHHHHH
T ss_pred hhHhhcCCCCCEEEccCCCccCcCHHHHHhccccceEEECC
Confidence 444445555555555555554 3344444455555555555
No 315
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.96 E-value=1.5e-30 Score=270.09 Aligned_cols=269 Identities=16% Similarity=0.133 Sum_probs=222.8
Q ss_pred CCCEEeccCCcCcccCChhhhccCCCCeEeccCCCCCCCCCccccCCCCccEEEcccCcccccCCcccccCCCCcceeec
Q 005045 83 SLKALSLAWNNLRGSIPNELGQLSGLGFFTLYGNFISGIIPSSIYNISSIYYFSVTQNQLHGQLPTDVGLTLPNLKIFAG 162 (717)
Q Consensus 83 ~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~~l~~~~~~~l~~L~~L~l 162 (717)
+++.++++.+.+...+...+..+++|++|+|++|.++++.|..|.++++|++|+|++|.+++. +. +..+++|++|++
T Consensus 11 ~l~i~~ls~~~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~-~~--~~~l~~L~~L~L 87 (317)
T 3o53_A 11 RYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYET-LD--LESLSTLRTLDL 87 (317)
T ss_dssp EEEEESCCTTTHHHHHHHHHTTGGGCSEEECTTSCCCCCCHHHHTTCTTCCEEECTTSCCEEE-EE--ETTCTTCCEEEC
T ss_pred ceeEeeccccchhhhHHHHhccCCCCCEEECcCCccCcCCHHHhhCCCcCCEEECCCCcCCcc-hh--hhhcCCCCEEEC
Confidence 456678889988866667778888999999999999988889999999999999999999844 33 668999999999
Q ss_pred ccccccccCCccCCCCCCCCEEeccCccccccCCCCccCCCCCCeeeccccccCCcccCchhhhhhhccCCCCCEEEeec
Q 005045 163 AVNYFTGSIPVSLSNASNLQVLDFAENGLTGTIPGNFGSLKDLVRLNFDQNELGSREIGDLNFLKFLANCTSLEVLGLAR 242 (717)
Q Consensus 163 ~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~l~~L~~L~L~~ 242 (717)
++|.+++.. ..++|++|++++|.+++..+.. +++|+.|++++|+++.+. +..+..+++|++|+|++
T Consensus 88 s~n~l~~l~-----~~~~L~~L~l~~n~l~~~~~~~---~~~L~~L~l~~N~l~~~~------~~~~~~l~~L~~L~Ls~ 153 (317)
T 3o53_A 88 NNNYVQELL-----VGPSIETLHAANNNISRVSCSR---GQGKKNIYLANNKITMLR------DLDEGCRSRVQYLDLKL 153 (317)
T ss_dssp CSSEEEEEE-----ECTTCCEEECCSSCCSEEEECC---CSSCEEEECCSSCCCSGG------GBCTGGGSSEEEEECTT
T ss_pred cCCcccccc-----CCCCcCEEECCCCccCCcCccc---cCCCCEEECCCCCCCCcc------chhhhccCCCCEEECCC
Confidence 999998543 3489999999999999666543 578999999999999876 56778899999999999
Q ss_pred CcccCcCchhhhhccccccEEecCCCccCCCCCccccCCCCCCEEEccCCcCccccchhhhcCCCCCeEEcccCcCCCCC
Q 005045 243 NSFGGEMPISIANLSTHLRRLTMGENLMHGNIPVGIGNLVNLNLLGLEGNNLSGSVPEVIGRLNKLEGLGLNVNKFSGLI 322 (717)
Q Consensus 243 N~l~~~~p~~~~~~~~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~ 322 (717)
|.+++..+..+....++|++|++++|.+++. + ....+++|++|+|++|++++ +|..+..+++|+.|+|++|++++ +
T Consensus 154 N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~-~-~~~~l~~L~~L~Ls~N~l~~-l~~~~~~l~~L~~L~L~~N~l~~-l 229 (317)
T 3o53_A 154 NEIDTVNFAELAASSDTLEHLNLQYNFIYDV-K-GQVVFAKLKTLDLSSNKLAF-MGPEFQSAAGVTWISLRNNKLVL-I 229 (317)
T ss_dssp SCCCEEEGGGGGGGTTTCCEEECTTSCCCEE-E-CCCCCTTCCEEECCSSCCCE-ECGGGGGGTTCSEEECTTSCCCE-E
T ss_pred CCCCcccHHHHhhccCcCCEEECCCCcCccc-c-cccccccCCEEECCCCcCCc-chhhhcccCcccEEECcCCcccc-h
Confidence 9999766777754336899999999999854 2 33458899999999999995 55558899999999999999985 4
Q ss_pred Ccccccccccceeeccccccc-ccCCcCccCcCCCceEEeecc-cCCCCCCc
Q 005045 323 PSSLGNLTILTRLWMEENRLE-GSIPPSLGNCQKLLVLNLSSN-DLNGTIPK 372 (717)
Q Consensus 323 ~~~~~~l~~L~~L~L~~N~l~-~~~p~~~~~l~~L~~L~l~~N-~l~~~~p~ 372 (717)
|..+..+++|+.|+|++|+++ +.+|..+..+++|+.|++++| .++|..|.
T Consensus 230 ~~~~~~l~~L~~L~l~~N~~~~~~~~~~~~~~~~L~~l~l~~~~~l~~~~~~ 281 (317)
T 3o53_A 230 EKALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQTVKKLTGQNEE 281 (317)
T ss_dssp CTTCCCCTTCCEEECTTCCCBHHHHHHHHHTCHHHHHHHHHHHHHHHSSSSC
T ss_pred hhHhhcCCCCCEEEccCCCccCcCHHHHHhccccceEEECCCchhccCCchh
Confidence 677888999999999999998 677788888999999998844 45554443
No 316
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.96 E-value=3.6e-30 Score=266.53 Aligned_cols=256 Identities=20% Similarity=0.188 Sum_probs=128.9
Q ss_pred CCCCCCCCEEEccCccccccCCccccCCCCCCEEeccCCcCc-ccCChhhh-------ccCCCCeEeccCCCCCCCCCcc
Q 005045 54 LSSLTKLEIIGLGGSNLTGNVPAWIGNFSSLKALSLAWNNLR-GSIPNELG-------QLSGLGFFTLYGNFISGIIPSS 125 (717)
Q Consensus 54 ~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~-~~~~~~~~-------~l~~L~~L~L~~N~i~~~~~~~ 125 (717)
++..++|+.|++++|.+ .+|..+... |+.|+|++|+++ ..+|..+. ++++|++|+|++|.+++..|..
T Consensus 39 ~~~~~~L~~l~l~~n~l--~~p~~~~~~--L~~L~L~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~ 114 (312)
T 1wwl_A 39 YGGGRSLEYLLKRVDTE--ADLGQFTDI--IKSLSLKRLTVRAARIPSRILFGALRVLGISGLQELTLENLEVTGTAPPP 114 (312)
T ss_dssp EEEEEECTTHHHHCCTT--CCCHHHHHH--HHHCCCCEEEEEEEECBHHHHHHHHHHHTTSCCCEEEEEEEBCBSCCCCC
T ss_pred EccCCCceeEeeccccc--ccHHHHHHH--HhhcccccccccCCCcCHHHHHHHHHhcCcCCccEEEccCCcccchhHHH
Confidence 34455666666666666 455544433 666666666663 23444443 5666666666666666556655
Q ss_pred c--cCCCCccEEEcccCcccccCCcccccCCCCcceeecccccccccCCccCCCCCCCCEEeccCccccccCCCCccCCC
Q 005045 126 I--YNISSIYYFSVTQNQLHGQLPTDVGLTLPNLKIFAGAVNYFTGSIPVSLSNASNLQVLDFAENGLTGTIPGNFGSLK 203 (717)
Q Consensus 126 ~--~~l~~L~~L~L~~N~l~~~l~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~ 203 (717)
+ ..+++|++|+|++|++++ +|..+. .+ + ...+++|++|++++|++++..+..|..++
T Consensus 115 ~~~~~l~~L~~L~Ls~N~l~~-~~~~~~-~l-----------------~--~~~~~~L~~L~L~~N~l~~~~~~~~~~l~ 173 (312)
T 1wwl_A 115 LLEATGPDLNILNLRNVSWAT-RDAWLA-EL-----------------Q--QWLKPGLKVLSIAQAHSLNFSCEQVRVFP 173 (312)
T ss_dssp SSSCCSCCCSEEEEESCBCSS-SSSHHH-HH-----------------H--TTCCTTCCEEEEESCSCCCCCTTTCCCCS
T ss_pred HHHhcCCCccEEEccCCCCcc-hhHHHH-HH-----------------H--HhhcCCCcEEEeeCCCCccchHHHhccCC
Confidence 4 566666666666666652 232221 11 0 00115556666666666555555555566
Q ss_pred CCCeeeccccccCCcccCchhhhhhh--ccCCCCCEEEeecCcccC--cCchhhhhccccccEEecCCCccCCCCC-ccc
Q 005045 204 DLVRLNFDQNELGSREIGDLNFLKFL--ANCTSLEVLGLARNSFGG--EMPISIANLSTHLRRLTMGENLMHGNIP-VGI 278 (717)
Q Consensus 204 ~L~~L~l~~N~l~~~~~~~~~~~~~~--~~l~~L~~L~L~~N~l~~--~~p~~~~~~~~~L~~L~l~~N~l~~~~~-~~~ 278 (717)
+|++|++++|++.... ..+..+ ..+++|++|+|++|.+++ .++..++...++|++|++++|.+++..| ..+
T Consensus 174 ~L~~L~Ls~N~l~~~~----~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~ 249 (312)
T 1wwl_A 174 ALSTLDLSDNPELGER----GLISALCPLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSC 249 (312)
T ss_dssp SCCEEECCSCTTCHHH----HHHHHSCTTSCTTCCEEECTTSCCCCHHHHHHHHHHTTCCCSEEECTTSCCCSSCCCSCC
T ss_pred CCCEEECCCCCcCcch----HHHHHHHhccCCCCCEEECCCCcCcchHHHHHHHHhcCCCCCEEECCCCcCCcccchhhh
Confidence 6666666665543210 012222 556666666666666662 1122222111355555555555554332 233
Q ss_pred cCCCCCCEEEccCCcCccccchhhhcCCCCCeEEcccCcCCCCCCcccccccccceeeccccccc
Q 005045 279 GNLVNLNLLGLEGNNLSGSVPEVIGRLNKLEGLGLNVNKFSGLIPSSLGNLTILTRLWMEENRLE 343 (717)
Q Consensus 279 ~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~ 343 (717)
..+++|++|+|++|+|+ .+|..+. ++|++|+|++|++++. |. +..+++|++|+|++|+++
T Consensus 250 ~~l~~L~~L~Ls~N~l~-~ip~~~~--~~L~~L~Ls~N~l~~~-p~-~~~l~~L~~L~L~~N~l~ 309 (312)
T 1wwl_A 250 DWPSQLNSLNLSFTGLK-QVPKGLP--AKLSVLDLSYNRLDRN-PS-PDELPQVGNLSLKGNPFL 309 (312)
T ss_dssp CCCTTCCEEECTTSCCS-SCCSSCC--SEEEEEECCSSCCCSC-CC-TTTSCEEEEEECTTCTTT
T ss_pred hhcCCCCEEECCCCccC-hhhhhcc--CCceEEECCCCCCCCC-hh-HhhCCCCCEEeccCCCCC
Confidence 44455555555555555 3443333 4444444444444433 22 444444444444444443
No 317
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.96 E-value=4.7e-30 Score=265.65 Aligned_cols=255 Identities=18% Similarity=0.214 Sum_probs=185.6
Q ss_pred CCcCCCCCCEEECCCCcccccCCcCCCCCCCCCEEEccCcccc-ccCCcccc-------CCCCCCEEeccCCcCcccCCh
Q 005045 29 NLSHCTELRSFEASVNDFVGQIPNQLSSLTKLEIIGLGGSNLT-GNVPAWIG-------NFSSLKALSLAWNNLRGSIPN 100 (717)
Q Consensus 29 ~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~-~~~p~~~~-------~l~~L~~L~L~~n~l~~~~~~ 100 (717)
.++..++|++|++++|.+ .+|..+... |+.|+|++|.++ ..+|..+. ++++|++|+|++|++++..|.
T Consensus 38 ~~~~~~~L~~l~l~~n~l--~~p~~~~~~--L~~L~L~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~ 113 (312)
T 1wwl_A 38 LYGGGRSLEYLLKRVDTE--ADLGQFTDI--IKSLSLKRLTVRAARIPSRILFGALRVLGISGLQELTLENLEVTGTAPP 113 (312)
T ss_dssp EEEEEEECTTHHHHCCTT--CCCHHHHHH--HHHCCCCEEEEEEEECBHHHHHHHHHHHTTSCCCEEEEEEEBCBSCCCC
T ss_pred EEccCCCceeEeeccccc--ccHHHHHHH--HhhcccccccccCCCcCHHHHHHHHHhcCcCCccEEEccCCcccchhHH
Confidence 356677899999999999 677766554 999999999994 45666665 799999999999999988888
Q ss_pred hh--hccCCCCeEeccCCCCCCCCCccccCC-----CCccEEEcccCcccccCCcccccCCCCcceeecccccccccCCc
Q 005045 101 EL--GQLSGLGFFTLYGNFISGIIPSSIYNI-----SSIYYFSVTQNQLHGQLPTDVGLTLPNLKIFAGAVNYFTGSIPV 173 (717)
Q Consensus 101 ~~--~~l~~L~~L~L~~N~i~~~~~~~~~~l-----~~L~~L~L~~N~l~~~l~~~~~~~l~~L~~L~l~~n~l~~~~~~ 173 (717)
.+ ..+++|++|+|++|++++. |..|..+ ++|++|+|++|+++ .++ +.
T Consensus 114 ~~~~~~l~~L~~L~Ls~N~l~~~-~~~~~~l~~~~~~~L~~L~L~~N~l~-~~~------------------------~~ 167 (312)
T 1wwl_A 114 PLLEATGPDLNILNLRNVSWATR-DAWLAELQQWLKPGLKVLSIAQAHSL-NFS------------------------CE 167 (312)
T ss_dssp CSSSCCSCCCSEEEEESCBCSSS-SSHHHHHHTTCCTTCCEEEEESCSCC-CCC------------------------TT
T ss_pred HHHHhcCCCccEEEccCCCCcch-hHHHHHHHHhhcCCCcEEEeeCCCCc-cch------------------------HH
Confidence 76 8999999999999999977 8888877 78888888888886 333 34
Q ss_pred cCCCCCCCCEEeccCcccccc--CCCC--ccCCCCCCeeeccccccCCcccCchhhhhhhccCCCCCEEEeecCcccCcC
Q 005045 174 SLSNASNLQVLDFAENGLTGT--IPGN--FGSLKDLVRLNFDQNELGSREIGDLNFLKFLANCTSLEVLGLARNSFGGEM 249 (717)
Q Consensus 174 ~~~~l~~L~~L~l~~N~l~~~--~~~~--~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~~~ 249 (717)
.|+.+++|++|++++|++.+. .+.. +..+++|++|++++|+++.++. + ....+.++++|++|+|++|.+++..
T Consensus 168 ~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~--~-~~~~~~~l~~L~~L~Ls~N~l~~~~ 244 (312)
T 1wwl_A 168 QVRVFPALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNAGMETPSG--V-CSALAAARVQLQGLDLSHNSLRDAA 244 (312)
T ss_dssp TCCCCSSCCEEECCSCTTCHHHHHHHHSCTTSCTTCCEEECTTSCCCCHHH--H-HHHHHHTTCCCSEEECTTSCCCSSC
T ss_pred HhccCCCCCEEECCCCCcCcchHHHHHHHhccCCCCCEEECCCCcCcchHH--H-HHHHHhcCCCCCEEECCCCcCCccc
Confidence 455555666666666655432 1112 2556666666666666663320 0 0234456777888888888877655
Q ss_pred chhhhhccccccEEecCCCccCCCCCccccCCCCCCEEEccCCcCccccchhhhcCCCCCeEEcccCcCCCC
Q 005045 250 PISIANLSTHLRRLTMGENLMHGNIPVGIGNLVNLNLLGLEGNNLSGSVPEVIGRLNKLEGLGLNVNKFSGL 321 (717)
Q Consensus 250 p~~~~~~~~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~ 321 (717)
|.......++|++|++++|.++ .+|..+. ++|+.|+|++|+|++. |. +..+++|++|+|++|++++.
T Consensus 245 ~~~~~~~l~~L~~L~Ls~N~l~-~ip~~~~--~~L~~L~Ls~N~l~~~-p~-~~~l~~L~~L~L~~N~l~~~ 311 (312)
T 1wwl_A 245 GAPSCDWPSQLNSLNLSFTGLK-QVPKGLP--AKLSVLDLSYNRLDRN-PS-PDELPQVGNLSLKGNPFLDS 311 (312)
T ss_dssp CCSCCCCCTTCCEEECTTSCCS-SCCSSCC--SEEEEEECCSSCCCSC-CC-TTTSCEEEEEECTTCTTTCC
T ss_pred chhhhhhcCCCCEEECCCCccC-hhhhhcc--CCceEEECCCCCCCCC-hh-HhhCCCCCEEeccCCCCCCC
Confidence 4333332357888888888887 5666655 7888888888888854 55 78888888888888888753
No 318
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.95 E-value=1.6e-28 Score=269.48 Aligned_cols=236 Identities=20% Similarity=0.204 Sum_probs=130.3
Q ss_pred CCCCCCEEEccCccccccCCccccCCCCCCEEeccCCcCcccCChhhhccCCCCeEeccCCCCCCCCCccccCCCCccEE
Q 005045 56 SLTKLEIIGLGGSNLTGNVPAWIGNFSSLKALSLAWNNLRGSIPNELGQLSGLGFFTLYGNFISGIIPSSIYNISSIYYF 135 (717)
Q Consensus 56 ~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L 135 (717)
.+++|++|+|++|.+++..|..|..+++|++|+|++|.+++..| |..+++|++|+|++|.|+++. ..++|++|
T Consensus 32 ~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~l~~l~-----~~~~L~~L 104 (487)
T 3oja_A 32 SAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDLNNNYVQELL-----VGPSIETL 104 (487)
T ss_dssp TGGGCCEEECCSSCCCCCCGGGGTTCTTCCEEECTTSCCEEEEE--CTTCTTCCEEECCSSEEEEEE-----ECTTCCEE
T ss_pred cCCCccEEEeeCCcCCCCCHHHHhCCCCCCEEEeeCCCCCCCcc--cccCCCCCEEEecCCcCCCCC-----CCCCcCEE
Confidence 33456666666666665555566666666666666666664443 666666666666666665322 22566777
Q ss_pred EcccCcccccCCcccccCCCCcceeecccccccccCCccCCCCCCCCEEeccCccccccCCCCcc-CCCCCCeeeccccc
Q 005045 136 SVTQNQLHGQLPTDVGLTLPNLKIFAGAVNYFTGSIPVSLSNASNLQVLDFAENGLTGTIPGNFG-SLKDLVRLNFDQNE 214 (717)
Q Consensus 136 ~L~~N~l~~~l~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~-~l~~L~~L~l~~N~ 214 (717)
+|++|.++ .++.. .+++|+.|++++|.+++..|..+..+++|++|+|++|.+++..|..+. .+++|+.|+|++|.
T Consensus 105 ~L~~N~l~-~~~~~---~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~~l~~L~~L~Ls~N~ 180 (487)
T 3oja_A 105 HAANNNIS-RVSCS---RGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNF 180 (487)
T ss_dssp ECCSSCCC-CEEEC---CCSSCEEEECCSSCCCSGGGBCGGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSC
T ss_pred ECcCCcCC-CCCcc---ccCCCCEEECCCCCCCCCCchhhcCCCCCCEEECCCCCCCCcChHHHhhhCCcccEEecCCCc
Confidence 77777666 33322 235555555555555555555666666666666666666655555554 45666666666666
Q ss_pred cCCcccCchhhhhhhccCCCCCEEEeecCcccCcCchhhhhccccccEEecCCCccCCCCCccccCCCCCCEEEccCCcC
Q 005045 215 LGSREIGDLNFLKFLANCTSLEVLGLARNSFGGEMPISIANLSTHLRRLTMGENLMHGNIPVGIGNLVNLNLLGLEGNNL 294 (717)
Q Consensus 215 l~~~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~~~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~L~~N~l 294 (717)
|+.++ .+..+++|+.|+|++|.++ .+|..+..+ ++|+.|++++|.+++ +|..+..+++|+.|++++|.+
T Consensus 181 l~~~~--------~~~~l~~L~~L~Ls~N~l~-~~~~~~~~l-~~L~~L~Ls~N~l~~-lp~~l~~l~~L~~L~l~~N~l 249 (487)
T 3oja_A 181 IYDVK--------GQVVFAKLKTLDLSSNKLA-FMGPEFQSA-AGVTWISLRNNKLVL-IEKALRFSQNLEHFDLRGNGF 249 (487)
T ss_dssp CCEEE--------CCCCCTTCCEEECCSSCCC-EECGGGGGG-TTCSEEECTTSCCCE-ECTTCCCCTTCCEEECTTCCB
T ss_pred ccccc--------ccccCCCCCEEECCCCCCC-CCCHhHcCC-CCccEEEecCCcCcc-cchhhccCCCCCEEEcCCCCC
Confidence 65542 1223555666666666655 233334433 345555555555542 344445555555555555555
Q ss_pred c-cccchhhhcCCCCCeEEc
Q 005045 295 S-GSVPEVIGRLNKLEGLGL 313 (717)
Q Consensus 295 ~-~~~~~~~~~l~~L~~L~L 313 (717)
. +.+|..+..++.|+.|++
T Consensus 250 ~c~~~~~~~~~l~~L~~l~~ 269 (487)
T 3oja_A 250 HCGTLRDFFSKNQRVQTVAK 269 (487)
T ss_dssp CHHHHHHHHTTCHHHHHHHH
T ss_pred cCcchHHHHHhCCCCcEEec
Confidence 4 334444444444444444
No 319
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.94 E-value=1.1e-26 Score=236.05 Aligned_cols=227 Identities=20% Similarity=0.202 Sum_probs=184.0
Q ss_pred cEEEcCCCcCcCCCCcCCcCCCCCCEEECCCCcccccCCcCCCCCCCCCEEEccCccccccCCccccCCCCCCEEeccCC
Q 005045 13 QDLNLTYNYLSGKIPTNLSHCTELRSFEASVNDFVGQIPNQLSSLTKLEIIGLGGSNLTGNVPAWIGNFSSLKALSLAWN 92 (717)
Q Consensus 13 ~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n 92 (717)
.+++.++.+++ .+|..+. ++|++|+|++|.+++..+..|.++++|++|+|++|.+++..+..|..+++|++|+|++|
T Consensus 10 ~~~~c~~~~l~-~ip~~l~--~~l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n 86 (276)
T 2z62_A 10 ITYQCMELNFY-KIPDNLP--FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGN 86 (276)
T ss_dssp TEEECTTSCCS-SCCSSSC--TTCCEEECTTCCCCEECTTTTTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTC
T ss_pred ceEEecCCCcc-ccCCCCC--CCccEEECCCCcccccCHhHhccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCC
Confidence 35677777777 5776554 57888999999888777778888888999999999888777778888888999999999
Q ss_pred cCcccCChhhhccCCCCeEeccCCCCCCCCCccccCCCCccEEEcccCccccc-CCcccccCCCCcceeecccccccccC
Q 005045 93 NLRGSIPNELGQLSGLGFFTLYGNFISGIIPSSIYNISSIYYFSVTQNQLHGQ-LPTDVGLTLPNLKIFAGAVNYFTGSI 171 (717)
Q Consensus 93 ~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~~-l~~~~~~~l~~L~~L~l~~n~l~~~~ 171 (717)
++++..+..|.++++|++|++++|.+++..+..|.++++|++|+|++|.+++. +|. .+..+++|+.|++++|.+++..
T Consensus 87 ~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~l~~-~~~~l~~L~~L~Ls~N~l~~~~ 165 (276)
T 2z62_A 87 PIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPE-YFSNLTNLEHLDLSSNKIQSIY 165 (276)
T ss_dssp CCCEECTTTTTTCTTCCEEECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCG-GGGGCTTCCEEECCSSCCCEEC
T ss_pred ccCccChhhhcCCccccEEECCCCCccccCchhcccCCCCCEEECcCCccceecCch-hhccCCCCCEEECCCCCCCcCC
Confidence 88877778888888999999999988877777888888999999999988731 344 4457888999999999888877
Q ss_pred CccCCCCCCCC----EEeccCccccccCCCCccCCCCCCeeeccccccCCcccCchhhhhhhccCCCCCEEEeecCcccC
Q 005045 172 PVSLSNASNLQ----VLDFAENGLTGTIPGNFGSLKDLVRLNFDQNELGSREIGDLNFLKFLANCTSLEVLGLARNSFGG 247 (717)
Q Consensus 172 ~~~~~~l~~L~----~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~ 247 (717)
+..+..+++|+ +|++++|.+++..+..+. ..+|+.|++++|+++.++ +..|..+++|+.|+|++|.+++
T Consensus 166 ~~~~~~l~~L~~l~l~L~ls~n~l~~~~~~~~~-~~~L~~L~L~~n~l~~~~------~~~~~~l~~L~~L~l~~N~~~c 238 (276)
T 2z62_A 166 CTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFK-EIRLKELALDTNQLKSVP------DGIFDRLTSLQKIWLHTNPWDC 238 (276)
T ss_dssp GGGGHHHHTCTTCCEEEECCSSCCCEECTTSSC-SCCEEEEECCSSCCSCCC------TTTTTTCCSCCEEECCSSCBCC
T ss_pred HHHhhhhhhccccceeeecCCCcccccCccccC-CCcccEEECCCCceeecC------HhHhcccccccEEEccCCcccc
Confidence 77777777776 899999999965555444 458999999999999877 5667889999999999999986
Q ss_pred cCc
Q 005045 248 EMP 250 (717)
Q Consensus 248 ~~p 250 (717)
..|
T Consensus 239 ~c~ 241 (276)
T 2z62_A 239 SCP 241 (276)
T ss_dssp CTT
T ss_pred cCC
Confidence 554
No 320
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.94 E-value=2.3e-26 Score=233.71 Aligned_cols=221 Identities=20% Similarity=0.204 Sum_probs=102.6
Q ss_pred EECCCCcccccCCcCCCCCCCCCEEEccCccccccCCccccCCCCCCEEeccCCcCcccCChhhhccCCCCeEeccCCCC
Q 005045 39 FEASVNDFVGQIPNQLSSLTKLEIIGLGGSNLTGNVPAWIGNFSSLKALSLAWNNLRGSIPNELGQLSGLGFFTLYGNFI 118 (717)
Q Consensus 39 L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~i 118 (717)
.+.++..++ .+|..+. ++|++|+|++|.+++..+..|.++++|++|+|++|++++..+..|.++++|++|+|++|.+
T Consensus 12 ~~c~~~~l~-~ip~~l~--~~l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l 88 (276)
T 2z62_A 12 YQCMELNFY-KIPDNLP--FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPI 88 (276)
T ss_dssp EECTTSCCS-SCCSSSC--TTCCEEECTTCCCCEECTTTTTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCC
T ss_pred EEecCCCcc-ccCCCCC--CCccEEECCCCcccccCHhHhccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCcc
Confidence 334444444 3443332 2455555555555544444455555555555555555544444455555555555555555
Q ss_pred CCCCCccccCCCCccEEEcccCcccccCCcccccCCCCcceeeccccccccc-CCccCCCCCCCCEEeccCccccccCCC
Q 005045 119 SGIIPSSIYNISSIYYFSVTQNQLHGQLPTDVGLTLPNLKIFAGAVNYFTGS-IPVSLSNASNLQVLDFAENGLTGTIPG 197 (717)
Q Consensus 119 ~~~~~~~~~~l~~L~~L~L~~N~l~~~l~~~~~~~l~~L~~L~l~~n~l~~~-~~~~~~~l~~L~~L~l~~N~l~~~~~~ 197 (717)
++..+..|.++++|++|++++|.++ .++...+..+++|+.|++++|.+... +|..+..+++|++|++++|++++..+.
T Consensus 89 ~~~~~~~~~~l~~L~~L~l~~n~l~-~~~~~~~~~l~~L~~L~l~~n~l~~~~l~~~~~~l~~L~~L~Ls~N~l~~~~~~ 167 (276)
T 2z62_A 89 QSLALGAFSGLSSLQKLVAVETNLA-SLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCT 167 (276)
T ss_dssp CEECTTTTTTCTTCCEEECTTSCCC-CSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGG
T ss_pred CccChhhhcCCccccEEECCCCCcc-ccCchhcccCCCCCEEECcCCccceecCchhhccCCCCCEEECCCCCCCcCCHH
Confidence 5444445555555555555555554 33333334455555555555555432 244455555555555555555544444
Q ss_pred CccCCCCCC----eeeccccccCCcccCchhhhhhhccCCCCCEEEeecCcccCcCchhhhhccccccEEecCCCccC
Q 005045 198 NFGSLKDLV----RLNFDQNELGSREIGDLNFLKFLANCTSLEVLGLARNSFGGEMPISIANLSTHLRRLTMGENLMH 271 (717)
Q Consensus 198 ~~~~l~~L~----~L~l~~N~l~~~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~~~~L~~L~l~~N~l~ 271 (717)
.|..+++|+ .|++++|.++.++ +..+. ..+|+.|+|++|.+++..+..+..+ ++|+.|++++|++.
T Consensus 168 ~~~~l~~L~~l~l~L~ls~n~l~~~~------~~~~~-~~~L~~L~L~~n~l~~~~~~~~~~l-~~L~~L~l~~N~~~ 237 (276)
T 2z62_A 168 DLRVLHQMPLLNLSLDLSLNPMNFIQ------PGAFK-EIRLKELALDTNQLKSVPDGIFDRL-TSLQKIWLHTNPWD 237 (276)
T ss_dssp GGHHHHTCTTCCEEEECCSSCCCEEC------TTSSC-SCCEEEEECCSSCCSCCCTTTTTTC-CSCCEEECCSSCBC
T ss_pred HhhhhhhccccceeeecCCCcccccC------ccccC-CCcccEEECCCCceeecCHhHhccc-ccccEEEccCCccc
Confidence 444444444 4455555554443 11111 2245555555555552222222223 34555555555544
No 321
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.94 E-value=5.6e-29 Score=281.98 Aligned_cols=350 Identities=13% Similarity=0.082 Sum_probs=213.1
Q ss_pred eecEEEcCCCcCcCCCCcCCcC-CC-CCCEEECCCCc-ccc-cCCcCCCCCCCCCEEEccCcccccc----CCccccCCC
Q 005045 11 MTQDLNLTYNYLSGKIPTNLSH-CT-ELRSFEASVND-FVG-QIPNQLSSLTKLEIIGLGGSNLTGN----VPAWIGNFS 82 (717)
Q Consensus 11 ~~~~L~L~~n~l~~~~~~~~~~-l~-~L~~L~L~~n~-l~~-~~p~~~~~l~~L~~L~L~~n~l~~~----~p~~~~~l~ 82 (717)
.+++|+|++|.+++..+..+.. ++ +|++|+|++|. ++. .++..+.++++|++|+|++|.+++. ++..+..++
T Consensus 113 ~L~~L~L~~~~i~~~~~~~l~~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~~~ 192 (592)
T 3ogk_B 113 QLKSVHFRRMIVSDLDLDRLAKARADDLETLKLDKCSGFTTDGLLSIVTHCRKIKTLLMEESSFSEKDGKWLHELAQHNT 192 (592)
T ss_dssp TCCEEEEESCBCCHHHHHHHHHHHGGGCCEEEEESCEEEEHHHHHHHHHHCTTCSEEECTTCEEECCCSHHHHHHHHHCC
T ss_pred CCCeEEeeccEecHHHHHHHHHhccccCcEEECcCCCCcCHHHHHHHHhhCCCCCEEECccccccCcchhHHHHHHhcCC
Confidence 5677777777666554444444 22 36666666665 111 1122223556666666666666543 222334556
Q ss_pred CCCEEeccCCcCcc----cCChhhhccCCCCeEeccCCCCCCCCCccccCCCCccEEEc---------------------
Q 005045 83 SLKALSLAWNNLRG----SIPNELGQLSGLGFFTLYGNFISGIIPSSIYNISSIYYFSV--------------------- 137 (717)
Q Consensus 83 ~L~~L~L~~n~l~~----~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L--------------------- 137 (717)
+|++|+|++|.+++ .++..+..+++|++|+|++|.+.+ .+..+.++++|++|++
T Consensus 193 ~L~~L~L~~n~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~-l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~ 271 (592)
T 3ogk_B 193 SLEVLNFYMTEFAKISPKDLETIARNCRSLVSVKVGDFEILE-LVGFFKAAANLEEFCGGSLNEDIGMPEKYMNLVFPRK 271 (592)
T ss_dssp CCCEEECTTCCCSSCCHHHHHHHHHHCTTCCEEECSSCBGGG-GHHHHHHCTTCCEEEECBCCCCTTCTTSSSCCCCCTT
T ss_pred CccEEEeeccCCCccCHHHHHHHHhhCCCCcEEeccCccHHH-HHHHHhhhhHHHhhcccccccccchHHHHHHhhcccc
Confidence 66666666666652 233334456666666666666553 3344455555555555
Q ss_pred ------ccCcccccCCcccccCCCCcceeecccccccccCC-ccCCCCCCCCEEeccCccccc-cCCCCccCCCCCCeee
Q 005045 138 ------TQNQLHGQLPTDVGLTLPNLKIFAGAVNYFTGSIP-VSLSNASNLQVLDFAENGLTG-TIPGNFGSLKDLVRLN 209 (717)
Q Consensus 138 ------~~N~l~~~l~~~~~~~l~~L~~L~l~~n~l~~~~~-~~~~~l~~L~~L~l~~N~l~~-~~~~~~~~l~~L~~L~ 209 (717)
+++... .+|. .+..+++|+.|++++|.++.... ..+..+++|++|+++ +.+.. .++..+..+++|++|+
T Consensus 272 L~~L~l~~~~~~-~l~~-~~~~~~~L~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~-~~~~~~~l~~~~~~~~~L~~L~ 348 (592)
T 3ogk_B 272 LCRLGLSYMGPN-EMPI-LFPFAAQIRKLDLLYALLETEDHCTLIQKCPNLEVLETR-NVIGDRGLEVLAQYCKQLKRLR 348 (592)
T ss_dssp CCEEEETTCCTT-TGGG-GGGGGGGCCEEEETTCCCCHHHHHHHHTTCTTCCEEEEE-GGGHHHHHHHHHHHCTTCCEEE
T ss_pred ccccCccccchh-HHHH-HHhhcCCCcEEecCCCcCCHHHHHHHHHhCcCCCEEecc-CccCHHHHHHHHHhCCCCCEEE
Confidence 443222 3333 23356777777777777654333 235667777777777 33332 2333335567788888
Q ss_pred cc-----------ccccCCcccCchhhhhhhccCCCCCEEEeecCcccCcCchhhhhccccccEEecC----CCccCCC-
Q 005045 210 FD-----------QNELGSREIGDLNFLKFLANCTSLEVLGLARNSFGGEMPISIANLSTHLRRLTMG----ENLMHGN- 273 (717)
Q Consensus 210 l~-----------~N~l~~~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~~~~L~~L~l~----~N~l~~~- 273 (717)
++ .|.++... +......+++|++|+++.|.+++..+..+....++|+.|+++ .|.+++.
T Consensus 349 L~~g~~~~~~~~~~~~~~~~~-----~~~l~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~~n~l~~~p 423 (592)
T 3ogk_B 349 IERGADEQGMEDEEGLVSQRG-----LIALAQGCQELEYMAVYVSDITNESLESIGTYLKNLCDFRLVLLDREERITDLP 423 (592)
T ss_dssp EECCCCSSTTSSTTCCCCHHH-----HHHHHHHCTTCSEEEEEESCCCHHHHHHHHHHCCSCCEEEEEECSCCSCCSSCC
T ss_pred eecCccccccccccCccCHHH-----HHHHHhhCccCeEEEeecCCccHHHHHHHHhhCCCCcEEEEeecCCCccccCch
Confidence 87 35555432 123345678888888888888877777776634588888885 6677643
Q ss_pred ----CCccccCCCCCCEEEccCCc--Cccccchhhhc-CCCCCeEEcccCcCCCC-CCcccccccccceeeccccccccc
Q 005045 274 ----IPVGIGNLVNLNLLGLEGNN--LSGSVPEVIGR-LNKLEGLGLNVNKFSGL-IPSSLGNLTILTRLWMEENRLEGS 345 (717)
Q Consensus 274 ----~~~~~~~l~~L~~L~L~~N~--l~~~~~~~~~~-l~~L~~L~Ls~N~l~~~-~~~~~~~l~~L~~L~L~~N~l~~~ 345 (717)
++..+.++++|+.|+|++|. +++..+..+.. +++|++|+|++|++++. .+..+.++++|+.|+|++|.+++.
T Consensus 424 ~~~~~~~~~~~~~~L~~L~L~~~~~~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~ 503 (592)
T 3ogk_B 424 LDNGVRSLLIGCKKLRRFAFYLRQGGLTDLGLSYIGQYSPNVRWMLLGYVGESDEGLMEFSRGCPNLQKLEMRGCCFSER 503 (592)
T ss_dssp CHHHHHHHHHHCTTCCEEEEECCGGGCCHHHHHHHHHSCTTCCEEEECSCCSSHHHHHHHHTCCTTCCEEEEESCCCBHH
T ss_pred HHHHHHHHHHhCCCCCEEEEecCCCCccHHHHHHHHHhCccceEeeccCCCCCHHHHHHHHhcCcccCeeeccCCCCcHH
Confidence 22336668888888887543 66555555544 78888888888888753 234456778888899988887644
Q ss_pred -CCcCccCcCCCceEEeecccCCCC
Q 005045 346 -IPPSLGNCQKLLVLNLSSNDLNGT 369 (717)
Q Consensus 346 -~p~~~~~l~~L~~L~l~~N~l~~~ 369 (717)
++..+..+++|+.|++++|++++.
T Consensus 504 ~~~~~~~~l~~L~~L~ls~n~it~~ 528 (592)
T 3ogk_B 504 AIAAAVTKLPSLRYLWVQGYRASMT 528 (592)
T ss_dssp HHHHHHHHCSSCCEEEEESCBCCTT
T ss_pred HHHHHHHhcCccCeeECcCCcCCHH
Confidence 334446788888899998888754
No 322
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.94 E-value=8e-26 Score=228.70 Aligned_cols=200 Identities=22% Similarity=0.292 Sum_probs=121.6
Q ss_pred ecEEEcCCCcCcCCCCcCCcCCCCCCEEECCCCcccccCCcCCCCCCCCCEEEccCccccccCCccccCCCCCCEEeccC
Q 005045 12 TQDLNLTYNYLSGKIPTNLSHCTELRSFEASVNDFVGQIPNQLSSLTKLEIIGLGGSNLTGNVPAWIGNFSSLKALSLAW 91 (717)
Q Consensus 12 ~~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~ 91 (717)
.+++++++++++ .+|..+. ++|++|+|++|.+++..+..|.++++|++|+|++|.++...+..|..+++|++|+|++
T Consensus 18 ~~~l~~~~~~l~-~ip~~~~--~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~ 94 (270)
T 2o6q_A 18 KNSVDCSSKKLT-AIPSNIP--ADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWVTD 94 (270)
T ss_dssp TTEEECTTSCCS-SCCSCCC--TTCSEEECCSSCCSCCCTTSSSSCTTCCEEECCSSCCSCCCTTTTSSCTTCCEEECCS
T ss_pred CCEEEccCCCCC-ccCCCCC--CCCCEEECcCCCCCeeCHHHhcCCCCCCEEECCCCccCeeChhhhcCCCCCCEEECCC
Confidence 456777777776 4555443 4677777777777655555667777777777777777644444556667777777777
Q ss_pred CcCcccCChhhhccCCCCeEeccCCCCCCCCCccccCCCCccEEEcccCcccccCCcccccCCCCcceeecccccccccC
Q 005045 92 NNLRGSIPNELGQLSGLGFFTLYGNFISGIIPSSIYNISSIYYFSVTQNQLHGQLPTDVGLTLPNLKIFAGAVNYFTGSI 171 (717)
Q Consensus 92 n~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~~l~~~~~~~l~~L~~L~l~~n~l~~~~ 171 (717)
|++++..+..|..+++|++|+|++|.++++.+..|.++++|++|+|++|.++ .+|...+..+++|+.|++++|.++...
T Consensus 95 n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~-~~~~~~~~~l~~L~~L~L~~n~l~~~~ 173 (270)
T 2o6q_A 95 NKLQALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNELQ-SLPKGVFDKLTSLKELRLYNNQLKRVP 173 (270)
T ss_dssp SCCCCCCTTTTTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCTTCCEEECCSSCCSCCC
T ss_pred CcCCcCCHhHcccccCCCEEECCCCccCeeCHHHhCcCcCCCEEECCCCcCC-ccCHhHccCCcccceeEecCCcCcEeC
Confidence 7776555556666777777777777776666666666667777777776666 555554445555555555555555444
Q ss_pred CccCCCCCCCCEEeccCccccccCCCCccCCCCCCeeecccccc
Q 005045 172 PVSLSNASNLQVLDFAENGLTGTIPGNFGSLKDLVRLNFDQNEL 215 (717)
Q Consensus 172 ~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~l 215 (717)
+..|..+++|++|++++|++++..+..|..+++|+.|++++|.+
T Consensus 174 ~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~ 217 (270)
T 2o6q_A 174 EGAFDKLTELKTLKLDNNQLKRVPEGAFDSLEKLKMLQLQENPW 217 (270)
T ss_dssp TTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCB
T ss_pred hhHhccCCCcCEEECCCCcCCcCCHHHhccccCCCEEEecCCCe
Confidence 44455555555555555555543333444444444444444444
No 323
>4azs_A Methyltransferase WBDD; kinase; HET: AMP SAM; 2.15A {Escherichia coli} PDB: 4azt_A* 4azv_A* 4azw_A*
Probab=99.94 E-value=7.9e-29 Score=275.55 Aligned_cols=184 Identities=17% Similarity=0.059 Sum_probs=126.6
Q ss_pred cCcccccceEEEE-eCCCchhhhHHhHhh----------hhhHHHHHHHHHHHHhcC-CCCceeEEEEeeccccCCCCce
Q 005045 397 IGTGSFGSVYKGT-LGDGTIVAIKVLKLQ----------QQGALKSFIDECNALKST-RHRNILRVITACSSVDLEGNDF 464 (717)
Q Consensus 397 ig~g~~g~v~~~~-~~~~~~vavK~~~~~----------~~~~~~~~~~e~~~l~~l-~h~ni~~~~~~~~~~~~~~~~~ 464 (717)
.+.|+.|.+..++ .-.|+.+++|++... .....+.+.+|+++|+++ .|+||++++++ ++++..
T Consensus 242 ~~~~~~~~h~~~rr~~fg~~~~~K~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~~~~~~~i~~~~~~-----~ed~~~ 316 (569)
T 4azs_A 242 PYAGAGLAHKRSRRYFFGEDYVCKFFYYDMPHGILTAEESQRNKYELHNEIKFLTQPPAGFDAPAVLAH-----GENAQS 316 (569)
T ss_dssp -C--------CCEEEEECSSEEEEEEESSCSTTCSCHHHHHHHHHHHHHHHHHHHSCCTTCCCCCEEEE-----EECSSE
T ss_pred cccCCcccccccccccccceeEEEEEecccccccchhhhhHHHHHHHHHHHHHHHhcCCCCCeeEEEEE-----EEECCE
Confidence 4455555555444 225788888887532 123356799999999999 79999999999 556679
Q ss_pred EEEEEecCCCCChhhhccCCCCCcccccccCHHHHHHHHHHHHHHHHHHHhcCCCCeeecCCCCCCEEeCCCCceEEeee
Q 005045 465 KALVFEFMSNGNLDQWLHPSPAEHYQFKKLSVIQRLNIAIDVASALDYLHHHCDTPIAHCDLKPSNVLLDKDMTAHVGDF 544 (717)
Q Consensus 465 ~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~dlkp~NIll~~~~~~kl~Df 544 (717)
.||||||++|++|.+++... +.++.. +|+.||+.||+|+|++ |||||||||+|||++.+|.+||+||
T Consensus 317 ~yLVMEyv~G~~L~d~i~~~-------~~l~~~---~I~~QIl~AL~ylH~~---GIIHRDIKPeNILL~~dg~vKL~DF 383 (569)
T 4azs_A 317 GWLVMEKLPGRLLSDMLAAG-------EEIDRE---KILGSLLRSLAALEKQ---GFWHDDVRPWNVMVDARQHARLIDF 383 (569)
T ss_dssp EEEEEECCCSEEHHHHHHTT-------CCCCHH---HHHHHHHHHHHHHHHT---TCEESCCCGGGEEECTTSCEEECCC
T ss_pred EEEEEecCCCCcHHHHHHhC-------CCCCHH---HHHHHHHHHHHHHHHC---CceeccCchHhEEECCCCCEEEeec
Confidence 99999999999999999865 345543 5899999999999998 9999999999999999999999999
Q ss_pred ccchhcccccCCCCCCcceeecccccccccCCCccCCCCCcccchhhHHHHHHHHHhCCCC
Q 005045 545 GLAKFLFEISDNPSKNQTVSIGLKGSIGYIPPEHMNGQVSILGDIYSYGILLLEMFTGKRP 605 (717)
Q Consensus 545 g~~~~~~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~sDvwslG~vl~elltg~~p 605 (717)
|+|+.... .........||+.|+|||++.|++..++|+||+|+++|++.++..|
T Consensus 384 GlAr~~~~-------~~~~~~t~vGTp~YmAPE~l~g~~~~~~d~~s~g~~~~~l~~~~~~ 437 (569)
T 4azs_A 384 GSIVTTPQ-------DCSWPTNLVQSFFVFVNELFAENKSWNGFWRSAPVHPFNLPQPWSN 437 (569)
T ss_dssp TTEESCC----------CCSHHHHHHHHHHHHHHC-----------------CCCCTTHHH
T ss_pred ccCeeCCC-------CCccccCceechhhccHHHhCCCCCCcccccccccchhhhccccch
Confidence 99986521 1223345679999999999999999999999999998877665444
No 324
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.94 E-value=2.1e-25 Score=225.69 Aligned_cols=202 Identities=19% Similarity=0.241 Sum_probs=143.4
Q ss_pred CCCEEECCCCcccccCCcCCCCCCCCCEEEccCccccccCCccccCCCCCCEEeccCCcCcccCChhhhccCCCCeEecc
Q 005045 35 ELRSFEASVNDFVGQIPNQLSSLTKLEIIGLGGSNLTGNVPAWIGNFSSLKALSLAWNNLRGSIPNELGQLSGLGFFTLY 114 (717)
Q Consensus 35 ~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~ 114 (717)
+++.+++++++++ .+|..+. ++|++|+|++|++++..+..|.++++|++|+|++|+|+...+..|.++++|++|+|+
T Consensus 17 ~~~~l~~~~~~l~-~ip~~~~--~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~ 93 (270)
T 2o6q_A 17 NKNSVDCSSKKLT-AIPSNIP--ADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWVT 93 (270)
T ss_dssp TTTEEECTTSCCS-SCCSCCC--TTCSEEECCSSCCSCCCTTSSSSCTTCCEEECCSSCCSCCCTTTTSSCTTCCEEECC
T ss_pred CCCEEEccCCCCC-ccCCCCC--CCCCEEECcCCCCCeeCHHHhcCCCCCCEEECCCCccCeeChhhhcCCCCCCEEECC
Confidence 4677888888877 5665554 567788888888776555677777888888888888775555666777788888888
Q ss_pred CCCCCCCCCccccCCCCccEEEcccCcccccCCcccccCCCCcceeecccccccccCCccCCCCCCCCEEeccCcccccc
Q 005045 115 GNFISGIIPSSIYNISSIYYFSVTQNQLHGQLPTDVGLTLPNLKIFAGAVNYFTGSIPVSLSNASNLQVLDFAENGLTGT 194 (717)
Q Consensus 115 ~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~~l~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~ 194 (717)
+|.++.+.+..|.++++|++|+|++|.++ .++...+..+++|+.|++++|.++...+..|..+++|++|++++|.+++.
T Consensus 94 ~n~l~~~~~~~~~~l~~L~~L~l~~n~l~-~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~ 172 (270)
T 2o6q_A 94 DNKLQALPIGVFDQLVNLAELRLDRNQLK-SLPPRVFDSLTKLTYLSLGYNELQSLPKGVFDKLTSLKELRLYNNQLKRV 172 (270)
T ss_dssp SSCCCCCCTTTTTTCSSCCEEECCSSCCC-CCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCC
T ss_pred CCcCCcCCHhHcccccCCCEEECCCCccC-eeCHHHhCcCcCCCEEECCCCcCCccCHhHccCCcccceeEecCCcCcEe
Confidence 88877776677777777888888877776 56666666677777777777777766555667777777777777777755
Q ss_pred CCCCccCCCCCCeeeccccccCCcccCchhhhhhhccCCCCCEEEeecCccc
Q 005045 195 IPGNFGSLKDLVRLNFDQNELGSREIGDLNFLKFLANCTSLEVLGLARNSFG 246 (717)
Q Consensus 195 ~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~l~~L~~L~L~~N~l~ 246 (717)
.+..|..+++|+.|++++|.++.++ +..|..+++|+.|+|++|.+.
T Consensus 173 ~~~~~~~l~~L~~L~L~~N~l~~~~------~~~~~~l~~L~~L~l~~N~~~ 218 (270)
T 2o6q_A 173 PEGAFDKLTELKTLKLDNNQLKRVP------EGAFDSLEKLKMLQLQENPWD 218 (270)
T ss_dssp CTTTTTTCTTCCEEECCSSCCSCCC------TTTTTTCTTCCEEECCSSCBC
T ss_pred ChhHhccCCCcCEEECCCCcCCcCC------HHHhccccCCCEEEecCCCee
Confidence 5556666777777777777766655 344566666666666666665
No 325
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.93 E-value=1.6e-25 Score=228.49 Aligned_cols=206 Identities=23% Similarity=0.244 Sum_probs=149.9
Q ss_pred ccCCCCccEEEcccCcccccCCcccccCCCCcceeecccccccccCCccCCCCCCCCEEeccCccccccCCCCccCCCCC
Q 005045 126 IYNISSIYYFSVTQNQLHGQLPTDVGLTLPNLKIFAGAVNYFTGSIPVSLSNASNLQVLDFAENGLTGTIPGNFGSLKDL 205 (717)
Q Consensus 126 ~~~l~~L~~L~L~~N~l~~~l~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L 205 (717)
+.++++|+.+++++|.++ .+|..++ ++++.|++++|.+++..+..|.++++|++|++++|.|+
T Consensus 6 ~~~l~~l~~l~~~~~~l~-~ip~~~~---~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~------------- 68 (290)
T 1p9a_G 6 VSKVASHLEVNCDKRNLT-ALPPDLP---KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELT------------- 68 (290)
T ss_dssp EECSTTCCEEECTTSCCS-SCCSCCC---TTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCC-------------
T ss_pred ccccCCccEEECCCCCCC-cCCCCCC---CCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCCccC-------------
Confidence 556667777777777776 5555443 34445555555554444455555555555555555555
Q ss_pred CeeeccccccCCcccCchhhhhhhccCCCCCEEEeecCcccCcCchhhhhccccccEEecCCCccCCCCCccccCCCCCC
Q 005045 206 VRLNFDQNELGSREIGDLNFLKFLANCTSLEVLGLARNSFGGEMPISIANLSTHLRRLTMGENLMHGNIPVGIGNLVNLN 285 (717)
Q Consensus 206 ~~L~l~~N~l~~~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~~~~L~~L~l~~N~l~~~~~~~~~~l~~L~ 285 (717)
.++ . ...+++|++|+|++|.++ .+|..+..+ ++|++|++++|++++..+..|.++++|+
T Consensus 69 -----------~~~------~--~~~l~~L~~L~Ls~N~l~-~l~~~~~~l-~~L~~L~l~~N~l~~l~~~~~~~l~~L~ 127 (290)
T 1p9a_G 69 -----------KLQ------V--DGTLPVLGTLDLSHNQLQ-SLPLLGQTL-PALTVLDVSFNRLTSLPLGALRGLGELQ 127 (290)
T ss_dssp -----------EEE------C--CSCCTTCCEEECCSSCCS-SCCCCTTTC-TTCCEEECCSSCCCCCCSSTTTTCTTCC
T ss_pred -----------ccc------C--CCCCCcCCEEECCCCcCC-cCchhhccC-CCCCEEECCCCcCcccCHHHHcCCCCCC
Confidence 332 0 134455666666666665 555555555 4777777777777766677888999999
Q ss_pred EEEccCCcCccccchhhhcCCCCCeEEcccCcCCCCCCcccccccccceeecccccccccCCcCccCcCCCceEEeeccc
Q 005045 286 LLGLEGNNLSGSVPEVIGRLNKLEGLGLNVNKFSGLIPSSLGNLTILTRLWMEENRLEGSIPPSLGNCQKLLVLNLSSND 365 (717)
Q Consensus 286 ~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~l~~N~ 365 (717)
.|+|++|+|++..+..|..+++|+.|+|++|+++++.+..|..+++|+.|+|++|+++ .+|..+..+++|+.|+|++|+
T Consensus 128 ~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~-~ip~~~~~~~~L~~l~L~~Np 206 (290)
T 1p9a_G 128 ELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLY-TIPKGFFGSHLLPFAFLHGNP 206 (290)
T ss_dssp EEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCSCCCTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCCCSEEECCSCC
T ss_pred EEECCCCCCCccChhhcccccCCCEEECCCCcCCccCHHHhcCcCCCCEEECCCCcCC-ccChhhcccccCCeEEeCCCC
Confidence 9999999999777777889999999999999999888888889999999999999998 788888888999999999999
Q ss_pred CCCCC
Q 005045 366 LNGTI 370 (717)
Q Consensus 366 l~~~~ 370 (717)
+.+.+
T Consensus 207 ~~C~c 211 (290)
T 1p9a_G 207 WLCNC 211 (290)
T ss_dssp BCCSG
T ss_pred ccCcC
Confidence 98665
No 326
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.93 E-value=3.6e-25 Score=225.86 Aligned_cols=197 Identities=23% Similarity=0.232 Sum_probs=112.9
Q ss_pred eecEEEcCCCcCcCCCCcCCcCCCCCCEEECCCCcccccCCcCCCCCCCCCEEEccCccccccCCccccCCCCCCEEecc
Q 005045 11 MTQDLNLTYNYLSGKIPTNLSHCTELRSFEASVNDFVGQIPNQLSSLTKLEIIGLGGSNLTGNVPAWIGNFSSLKALSLA 90 (717)
Q Consensus 11 ~~~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~ 90 (717)
+++++++++|+++ .+|..+. ++|+.|+|++|.+++..+..|.++++|++|+|++|.|++. +. ...+++|++|+|+
T Consensus 11 ~l~~l~~~~~~l~-~ip~~~~--~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~-~~-~~~l~~L~~L~Ls 85 (290)
T 1p9a_G 11 SHLEVNCDKRNLT-ALPPDLP--KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKL-QV-DGTLPVLGTLDLS 85 (290)
T ss_dssp TCCEEECTTSCCS-SCCSCCC--TTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCEE-EC-CSCCTTCCEEECC
T ss_pred CccEEECCCCCCC-cCCCCCC--CCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCCccCcc-cC-CCCCCcCCEEECC
Confidence 4566666666666 4444443 4666666666666655556666666666666666666632 22 2556666666666
Q ss_pred CCcCcccCChhhhccCCCCeEeccCCCCCCCCCccccCCCCccEEEcccCcccccCCcccccCCCCcceeeccccccccc
Q 005045 91 WNNLRGSIPNELGQLSGLGFFTLYGNFISGIIPSSIYNISSIYYFSVTQNQLHGQLPTDVGLTLPNLKIFAGAVNYFTGS 170 (717)
Q Consensus 91 ~n~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~~l~~~~~~~l~~L~~L~l~~n~l~~~ 170 (717)
+|+|+ .+|..+..+++|++|+|++|+|+++.+..|.++++|++|+|++|+++ .+|...|..+++|+.|++++|.++..
T Consensus 86 ~N~l~-~l~~~~~~l~~L~~L~l~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~-~~~~~~~~~l~~L~~L~L~~N~l~~l 163 (290)
T 1p9a_G 86 HNQLQ-SLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELK-TLPPGLLTPTPKLEKLSLANNNLTEL 163 (290)
T ss_dssp SSCCS-SCCCCTTTCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSCCC-CCCTTTTTTCTTCCEEECTTSCCSCC
T ss_pred CCcCC-cCchhhccCCCCCEEECCCCcCcccCHHHHcCCCCCCEEECCCCCCC-ccChhhcccccCCCEEECCCCcCCcc
Confidence 66666 55555666666666666666666555566666666666666666665 55555554555555555555555544
Q ss_pred CCccCCCCCCCCEEeccCccccccCCCCccCCCCCCeeecccccc
Q 005045 171 IPVSLSNASNLQVLDFAENGLTGTIPGNFGSLKDLVRLNFDQNEL 215 (717)
Q Consensus 171 ~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~l 215 (717)
.+..|..+++|++|+|++|+++ .+|..+..+++|+.|++++|.+
T Consensus 164 ~~~~~~~l~~L~~L~L~~N~l~-~ip~~~~~~~~L~~l~L~~Np~ 207 (290)
T 1p9a_G 164 PAGLLNGLENLDTLLLQENSLY-TIPKGFFGSHLLPFAFLHGNPW 207 (290)
T ss_dssp CTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCCCSEEECCSCCB
T ss_pred CHHHhcCcCCCCEEECCCCcCC-ccChhhcccccCCeEEeCCCCc
Confidence 4444455555555555555555 3444444444444444444444
No 327
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.93 E-value=3.8e-26 Score=231.31 Aligned_cols=226 Identities=19% Similarity=0.268 Sum_probs=163.7
Q ss_pred eecEEEcCCCcCcCCCCcCCcCCCCCCEEECCCCcccccCCcCCCCCCCCCEEEccCccccccCCccccCCCCCCEEecc
Q 005045 11 MTQDLNLTYNYLSGKIPTNLSHCTELRSFEASVNDFVGQIPNQLSSLTKLEIIGLGGSNLTGNVPAWIGNFSSLKALSLA 90 (717)
Q Consensus 11 ~~~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~ 90 (717)
.+..+++.++.+.... .+..+++|+.|++++|.++ .++ .+..+++|++|+|++|.+++ ++ .+..+++|++|+|+
T Consensus 20 ~l~~l~l~~~~~~~~~--~~~~l~~L~~L~l~~~~i~-~~~-~l~~l~~L~~L~l~~n~l~~-~~-~l~~l~~L~~L~L~ 93 (272)
T 3rfs_A 20 ETIKANLKKKSVTDAV--TQNELNSIDQIIANNSDIK-SVQ-GIQYLPNVRYLALGGNKLHD-IS-ALKELTNLTYLILT 93 (272)
T ss_dssp HHHHHHHTCSCTTSEE--CHHHHTTCCEEECTTSCCC-CCT-TGGGCTTCCEEECTTSCCCC-CG-GGTTCTTCCEEECT
T ss_pred HHHHHHhcCccccccc--ccccccceeeeeeCCCCcc-ccc-ccccCCCCcEEECCCCCCCC-ch-hhcCCCCCCEEECC
Confidence 4455667777776443 3567788888888888877 344 37778888888888888874 33 57788888888888
Q ss_pred CCcCcccCChhhhccCCCCeEeccCCCCCCCCCccccCCCCccEEEcccCcccccCCcccccCCCCcceeeccccccccc
Q 005045 91 WNNLRGSIPNELGQLSGLGFFTLYGNFISGIIPSSIYNISSIYYFSVTQNQLHGQLPTDVGLTLPNLKIFAGAVNYFTGS 170 (717)
Q Consensus 91 ~n~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~~l~~~~~~~l~~L~~L~l~~n~l~~~ 170 (717)
+|.+++..+..|..+++|++|+|++|+++++.+..|.++++|++|+|++|+++ .++...+..+++|+.|++++|.+++.
T Consensus 94 ~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~-~~~~~~~~~l~~L~~L~l~~n~l~~~ 172 (272)
T 3rfs_A 94 GNQLQSLPNGVFDKLTNLKELVLVENQLQSLPDGVFDKLTNLTYLNLAHNQLQ-SLPKGVFDKLTNLTELDLSYNQLQSL 172 (272)
T ss_dssp TSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCTTCCEEECCSSCCCCC
T ss_pred CCccCccChhHhcCCcCCCEEECCCCcCCccCHHHhccCCCCCEEECCCCccC-ccCHHHhccCccCCEEECCCCCcCcc
Confidence 88888777777788888888888888888777777888888888888888887 66666666777777777777777766
Q ss_pred CCccCCCCCCCCEEeccCccccccCCCCccCCCCCCeeeccccccCCcccCchhhhhhhccCCCCCEEEeecCcccCcCc
Q 005045 171 IPVSLSNASNLQVLDFAENGLTGTIPGNFGSLKDLVRLNFDQNELGSREIGDLNFLKFLANCTSLEVLGLARNSFGGEMP 250 (717)
Q Consensus 171 ~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~~~p 250 (717)
.+..+..+++|++|++++|++++..+..|..+++|+.|++++|.+.. .+++|+.|+++.|.++|.+|
T Consensus 173 ~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~-------------~~~~l~~l~~~~n~~~g~ip 239 (272)
T 3rfs_A 173 PEGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWDC-------------TCPGIRYLSEWINKHSGVVR 239 (272)
T ss_dssp CTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCC-------------CTTTTHHHHHHHHHTGGGBB
T ss_pred CHHHhcCCccCCEEECCCCcCCccCHHHHhCCcCCCEEEccCCCccc-------------cCcHHHHHHHHHHhCCCccc
Confidence 66667777777777777777776666666777777777777776542 23456666666677666666
Q ss_pred hhhhhc
Q 005045 251 ISIANL 256 (717)
Q Consensus 251 ~~~~~~ 256 (717)
..+..+
T Consensus 240 ~~~~~~ 245 (272)
T 3rfs_A 240 NSAGSV 245 (272)
T ss_dssp CTTSCB
T ss_pred Cccccc
Confidence 665544
No 328
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.93 E-value=2.8e-27 Score=250.15 Aligned_cols=266 Identities=19% Similarity=0.216 Sum_probs=160.2
Q ss_pred EEECCCCcccccCCcCCCCCCCCCEEEccCccccccCC----ccccCCC-CCCEEeccCCcCcccCChhhhcc-----CC
Q 005045 38 SFEASVNDFVGQIPNQLSSLTKLEIIGLGGSNLTGNVP----AWIGNFS-SLKALSLAWNNLRGSIPNELGQL-----SG 107 (717)
Q Consensus 38 ~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p----~~~~~l~-~L~~L~L~~n~l~~~~~~~~~~l-----~~ 107 (717)
.+++++|.+++.+|..+...++|++|+|++|.+++..+ ..|..++ +|++|+|++|+|++..+..|..+ ++
T Consensus 2 ~~~ls~n~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~ 81 (362)
T 3goz_A 2 NYKLTLHPGSNPVEEFTSIPHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPAN 81 (362)
T ss_dssp EEECCCCTTCCHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTT
T ss_pred ccccccccchHHHHHHHhCCCCceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCCC
Confidence 35677777777777666666667777777777775555 5666777 77777777777776666666665 77
Q ss_pred CCeEeccCCCCCCCCCcccc----CC-CCccEEEcccCcccccCCcccccCCCCcceeecccccccccCCccCCC-CCCC
Q 005045 108 LGFFTLYGNFISGIIPSSIY----NI-SSIYYFSVTQNQLHGQLPTDVGLTLPNLKIFAGAVNYFTGSIPVSLSN-ASNL 181 (717)
Q Consensus 108 L~~L~L~~N~i~~~~~~~~~----~l-~~L~~L~L~~N~l~~~l~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~-l~~L 181 (717)
|++|+|++|.+++..+..+. .+ ++|++|+|++|.++ ..+...+ ...+.. .++|
T Consensus 82 L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~-~~~~~~l--------------------~~~l~~~~~~L 140 (362)
T 3goz_A 82 VTSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFS-SKSSSEF--------------------KQAFSNLPASI 140 (362)
T ss_dssp CCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGG-GSCHHHH--------------------HHHHTTSCTTC
T ss_pred ccEEECcCCcCChHHHHHHHHHHHhCCCCccEEECcCCcCC-cHHHHHH--------------------HHHHHhCCCce
Confidence 77777777777755555333 33 67777777777776 3322211 011222 2456
Q ss_pred CEEeccCccccccCC----CCccCCC-CCCeeeccccccCCcccCchhhhhhhccC-CCCCEEEeecCcccCc----Cch
Q 005045 182 QVLDFAENGLTGTIP----GNFGSLK-DLVRLNFDQNELGSREIGDLNFLKFLANC-TSLEVLGLARNSFGGE----MPI 251 (717)
Q Consensus 182 ~~L~l~~N~l~~~~~----~~~~~l~-~L~~L~l~~N~l~~~~~~~~~~~~~~~~l-~~L~~L~L~~N~l~~~----~p~ 251 (717)
++|+|++|.+++... ..+..++ +|++|+|++|.++...... +...+..+ ++|++|+|++|.|++. ++.
T Consensus 141 ~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~--l~~~l~~~~~~L~~L~Ls~N~i~~~~~~~l~~ 218 (362)
T 3goz_A 141 TSLNLRGNDLGIKSSDELIQILAAIPANVNSLNLRGNNLASKNCAE--LAKFLASIPASVTSLDLSANLLGLKSYAELAY 218 (362)
T ss_dssp CEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGGSCHHH--HHHHHHTSCTTCCEEECTTSCGGGSCHHHHHH
T ss_pred eEEEccCCcCCHHHHHHHHHHHhcCCccccEeeecCCCCchhhHHH--HHHHHHhCCCCCCEEECCCCCCChhHHHHHHH
Confidence 666666666653222 2223333 6666666666665544211 12334444 4777777777777642 444
Q ss_pred hhhhccccccEEecCCCccCCCCC----ccccCCCCCCEEEccCCcCccccc-------hhhhcCCCCCeEEcccCcCCC
Q 005045 252 SIANLSTHLRRLTMGENLMHGNIP----VGIGNLVNLNLLGLEGNNLSGSVP-------EVIGRLNKLEGLGLNVNKFSG 320 (717)
Q Consensus 252 ~~~~~~~~L~~L~l~~N~l~~~~~----~~~~~l~~L~~L~L~~N~l~~~~~-------~~~~~l~~L~~L~Ls~N~l~~ 320 (717)
.+....++|++|++++|.+++..+ ..+..+++|+.|+|++|.+....+ ..+..+++|+.||+++|++.+
T Consensus 219 ~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~~~~l~~L~~L~L~~n~l~~i~~~~~~~l~~~~~~l~~L~~LdL~~N~l~~ 298 (362)
T 3goz_A 219 IFSSIPNHVVSLNLCLNCLHGPSLENLKLLKDSLKHLQTVYLDYDIVKNMSKEQCKALGAAFPNIQKIILVDKNGKEIHP 298 (362)
T ss_dssp HHHHSCTTCCEEECCSSCCCCCCHHHHHHTTTTTTTCSEEEEEHHHHTTCCHHHHHHHHTTSTTCCEEEEECTTSCBCCG
T ss_pred HHhcCCCCceEEECcCCCCCcHHHHHHHHHHhcCCCccEEEeccCCccccCHHHHHHHHHHhccCCceEEEecCCCcCCC
Confidence 444443467777777777765443 234566778888888887443322 345566777777777777765
Q ss_pred CCCccc
Q 005045 321 LIPSSL 326 (717)
Q Consensus 321 ~~~~~~ 326 (717)
..+..+
T Consensus 299 ~~~~~~ 304 (362)
T 3goz_A 299 SHSIPI 304 (362)
T ss_dssp GGCHHH
T ss_pred cchHHH
Confidence 544433
No 329
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.93 E-value=1.2e-25 Score=227.72 Aligned_cols=227 Identities=22% Similarity=0.287 Sum_probs=123.6
Q ss_pred CCEEECCCCcccccCCcCCCCCCCCCEEEccCccccccCCccccCCCCCCEEeccCCcCcccCChhhhccCCCCeEeccC
Q 005045 36 LRSFEASVNDFVGQIPNQLSSLTKLEIIGLGGSNLTGNVPAWIGNFSSLKALSLAWNNLRGSIPNELGQLSGLGFFTLYG 115 (717)
Q Consensus 36 L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~ 115 (717)
+..+++.++.+..... +..+++|+.|++++|.++ .++ .+..+++|++|+|++|.+++ + ..+..+++|++|+|++
T Consensus 21 l~~l~l~~~~~~~~~~--~~~l~~L~~L~l~~~~i~-~~~-~l~~l~~L~~L~l~~n~l~~-~-~~l~~l~~L~~L~L~~ 94 (272)
T 3rfs_A 21 TIKANLKKKSVTDAVT--QNELNSIDQIIANNSDIK-SVQ-GIQYLPNVRYLALGGNKLHD-I-SALKELTNLTYLILTG 94 (272)
T ss_dssp HHHHHHTCSCTTSEEC--HHHHTTCCEEECTTSCCC-CCT-TGGGCTTCCEEECTTSCCCC-C-GGGTTCTTCCEEECTT
T ss_pred HHHHHhcCcccccccc--cccccceeeeeeCCCCcc-ccc-ccccCCCCcEEECCCCCCCC-c-hhhcCCCCCCEEECCC
Confidence 4444555555443322 445566666666666665 333 25566666666666666653 2 2556666666666666
Q ss_pred CCCCCCCCccccCCCCccEEEcccCcccccCCcccccCCCCcceeecccccccccCCccCCCCCCCCEEeccCccccccC
Q 005045 116 NFISGIIPSSIYNISSIYYFSVTQNQLHGQLPTDVGLTLPNLKIFAGAVNYFTGSIPVSLSNASNLQVLDFAENGLTGTI 195 (717)
Q Consensus 116 N~i~~~~~~~~~~l~~L~~L~L~~N~l~~~l~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~ 195 (717)
|.++++.+..|.++++|++|+|++|+++ .++... |..+++|++|++++|.+++..
T Consensus 95 n~l~~~~~~~~~~l~~L~~L~L~~n~l~-~~~~~~------------------------~~~l~~L~~L~L~~n~l~~~~ 149 (272)
T 3rfs_A 95 NQLQSLPNGVFDKLTNLKELVLVENQLQ-SLPDGV------------------------FDKLTNLTYLNLAHNQLQSLP 149 (272)
T ss_dssp SCCCCCCTTTTTTCTTCCEEECTTSCCC-CCCTTT------------------------TTTCTTCCEEECCSSCCCCCC
T ss_pred CccCccChhHhcCCcCCCEEECCCCcCC-ccCHHH------------------------hccCCCCCEEECCCCccCccC
Confidence 6666555555666666666666666665 444444 444444555555555544444
Q ss_pred CCCccCCCCCCeeeccccccCCcccCchhhhhhhccCCCCCEEEeecCcccCcCchhhhhccccccEEecCCCccCCCCC
Q 005045 196 PGNFGSLKDLVRLNFDQNELGSREIGDLNFLKFLANCTSLEVLGLARNSFGGEMPISIANLSTHLRRLTMGENLMHGNIP 275 (717)
Q Consensus 196 ~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~~~~L~~L~l~~N~l~~~~~ 275 (717)
+..|..+++|+.|++++|+++.++ +..+..+++|+.|++++|.+++..|..+..+ ++|+.|++++|.+.+
T Consensus 150 ~~~~~~l~~L~~L~l~~n~l~~~~------~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l-~~L~~L~l~~N~~~~--- 219 (272)
T 3rfs_A 150 KGVFDKLTNLTELDLSYNQLQSLP------EGVFDKLTQLKDLRLYQNQLKSVPDGVFDRL-TSLQYIWLHDNPWDC--- 219 (272)
T ss_dssp TTTTTTCTTCCEEECCSSCCCCCC------TTTTTTCTTCCEEECCSSCCSCCCTTTTTTC-TTCCEEECCSSCBCC---
T ss_pred HHHhccCccCCEEECCCCCcCccC------HHHhcCCccCCEEECCCCcCCccCHHHHhCC-cCCCEEEccCCCccc---
Confidence 444444555555555555544443 3334455555555555555554333334444 356666666665542
Q ss_pred ccccCCCCCCEEEccCCcCccccchhhhcCCC
Q 005045 276 VGIGNLVNLNLLGLEGNNLSGSVPEVIGRLNK 307 (717)
Q Consensus 276 ~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~ 307 (717)
.+++|++|+++.|++++.+|.+++.+..
T Consensus 220 ----~~~~l~~l~~~~n~~~g~ip~~~~~~~~ 247 (272)
T 3rfs_A 220 ----TCPGIRYLSEWINKHSGVVRNSAGSVAP 247 (272)
T ss_dssp ----CTTTTHHHHHHHHHTGGGBBCTTSCBCG
T ss_pred ----cCcHHHHHHHHHHhCCCcccCcccccCC
Confidence 2445677777777777777776665543
No 330
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.93 E-value=1.2e-27 Score=271.13 Aligned_cols=344 Identities=13% Similarity=0.078 Sum_probs=233.3
Q ss_pred ecEEEcCCCc-CcC-CCCcCCcCCCCCCEEECCCCccccc----CCcCCCCCCCCCEEEccCcccc----ccCCccccCC
Q 005045 12 TQDLNLTYNY-LSG-KIPTNLSHCTELRSFEASVNDFVGQ----IPNQLSSLTKLEIIGLGGSNLT----GNVPAWIGNF 81 (717)
Q Consensus 12 ~~~L~L~~n~-l~~-~~~~~~~~l~~L~~L~L~~n~l~~~----~p~~~~~l~~L~~L~L~~n~l~----~~~p~~~~~l 81 (717)
+++|+|++|. +.. .++..+..+++|++|+|++|.+++. ++..+.++++|++|+|++|.++ +.++..+.++
T Consensus 140 L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~~~~~~ 219 (592)
T 3ogk_B 140 LETLKLDKCSGFTTDGLLSIVTHCRKIKTLLMEESSFSEKDGKWLHELAQHNTSLEVLNFYMTEFAKISPKDLETIARNC 219 (592)
T ss_dssp CCEEEEESCEEEEHHHHHHHHHHCTTCSEEECTTCEEECCCSHHHHHHHHHCCCCCEEECTTCCCSSCCHHHHHHHHHHC
T ss_pred CcEEECcCCCCcCHHHHHHHHhhCCCCCEEECccccccCcchhHHHHHHhcCCCccEEEeeccCCCccCHHHHHHHHhhC
Confidence 6777777765 110 1122233567777777777766543 2223345666777777777765 2333344566
Q ss_pred CCCCEEeccCCcCcccCChhhhccCCCCeEecc---------------------------CCCCCCCCCccccCCCCccE
Q 005045 82 SSLKALSLAWNNLRGSIPNELGQLSGLGFFTLY---------------------------GNFISGIIPSSIYNISSIYY 134 (717)
Q Consensus 82 ~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~---------------------------~N~i~~~~~~~~~~l~~L~~ 134 (717)
++|++|+|++|.+. .++..+..+++|+.|+++ ++.. ...|..+..+++|++
T Consensus 220 ~~L~~L~L~~~~~~-~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~-~~l~~~~~~~~~L~~ 297 (592)
T 3ogk_B 220 RSLVSVKVGDFEIL-ELVGFFKAAANLEEFCGGSLNEDIGMPEKYMNLVFPRKLCRLGLSYMGP-NEMPILFPFAAQIRK 297 (592)
T ss_dssp TTCCEEECSSCBGG-GGHHHHHHCTTCCEEEECBCCCCTTCTTSSSCCCCCTTCCEEEETTCCT-TTGGGGGGGGGGCCE
T ss_pred CCCcEEeccCccHH-HHHHHHhhhhHHHhhcccccccccchHHHHHHhhccccccccCccccch-hHHHHHHhhcCCCcE
Confidence 67777777777666 345556666666666665 3322 245667778899999
Q ss_pred EEcccCcccccCCcccccCCCCcceeecccccccccCCccCCCCCCCCEEecc-----------CccccccCC-CCccCC
Q 005045 135 FSVTQNQLHGQLPTDVGLTLPNLKIFAGAVNYFTGSIPVSLSNASNLQVLDFA-----------ENGLTGTIP-GNFGSL 202 (717)
Q Consensus 135 L~L~~N~l~~~l~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~-----------~N~l~~~~~-~~~~~l 202 (717)
|+|++|.+++.....+...+++|+.|+++++-....++..+..+++|++|+++ .|.++.... ..+..+
T Consensus 298 L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~~~~~~~~l~~~~~~~~~L~~L~L~~g~~~~~~~~~~~~~~~~~~~~l~~~~ 377 (592)
T 3ogk_B 298 LDLLYALLETEDHCTLIQKCPNLEVLETRNVIGDRGLEVLAQYCKQLKRLRIERGADEQGMEDEEGLVSQRGLIALAQGC 377 (592)
T ss_dssp EEETTCCCCHHHHHHHHTTCTTCCEEEEEGGGHHHHHHHHHHHCTTCCEEEEECCCCSSTTSSTTCCCCHHHHHHHHHHC
T ss_pred EecCCCcCCHHHHHHHHHhCcCCCEEeccCccCHHHHHHHHHhCCCCCEEEeecCccccccccccCccCHHHHHHHHhhC
Confidence 99999998754444555689999999999443333333444678999999999 366664322 224568
Q ss_pred CCCCeeeccccccCCcccCchhhhhhhcc-CCCCCEEEee----cCcccCc-----CchhhhhccccccEEecCCCc--c
Q 005045 203 KDLVRLNFDQNELGSREIGDLNFLKFLAN-CTSLEVLGLA----RNSFGGE-----MPISIANLSTHLRRLTMGENL--M 270 (717)
Q Consensus 203 ~~L~~L~l~~N~l~~~~~~~~~~~~~~~~-l~~L~~L~L~----~N~l~~~-----~p~~~~~~~~~L~~L~l~~N~--l 270 (717)
++|+.|+++.|.++... +..+.. +++|+.|+++ .|.+++. ++..+... ++|++|++++|. +
T Consensus 378 ~~L~~L~l~~~~l~~~~------~~~l~~~~~~L~~L~l~~~~~~n~l~~~p~~~~~~~~~~~~-~~L~~L~L~~~~~~l 450 (592)
T 3ogk_B 378 QELEYMAVYVSDITNES------LESIGTYLKNLCDFRLVLLDREERITDLPLDNGVRSLLIGC-KKLRRFAFYLRQGGL 450 (592)
T ss_dssp TTCSEEEEEESCCCHHH------HHHHHHHCCSCCEEEEEECSCCSCCSSCCCHHHHHHHHHHC-TTCCEEEEECCGGGC
T ss_pred ccCeEEEeecCCccHHH------HHHHHhhCCCCcEEEEeecCCCccccCchHHHHHHHHHHhC-CCCCEEEEecCCCCc
Confidence 99999999999988754 445554 8999999997 7788853 33345555 699999997543 5
Q ss_pred CCCCCcccc-CCCCCCEEEccCCcCcc-ccchhhhcCCCCCeEEcccCcCCCCC-CcccccccccceeecccccccccCC
Q 005045 271 HGNIPVGIG-NLVNLNLLGLEGNNLSG-SVPEVIGRLNKLEGLGLNVNKFSGLI-PSSLGNLTILTRLWMEENRLEGSIP 347 (717)
Q Consensus 271 ~~~~~~~~~-~l~~L~~L~L~~N~l~~-~~~~~~~~l~~L~~L~Ls~N~l~~~~-~~~~~~l~~L~~L~L~~N~l~~~~p 347 (717)
++..+..+. .+++|++|+|++|++++ .++..+.++++|++|+|++|.+++.. +..+..+++|++|+|++|++++.-.
T Consensus 451 ~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~ls~n~it~~~~ 530 (592)
T 3ogk_B 451 TDLGLSYIGQYSPNVRWMLLGYVGESDEGLMEFSRGCPNLQKLEMRGCCFSERAIAAAVTKLPSLRYLWVQGYRASMTGQ 530 (592)
T ss_dssp CHHHHHHHHHSCTTCCEEEECSCCSSHHHHHHHHTCCTTCCEEEEESCCCBHHHHHHHHHHCSSCCEEEEESCBCCTTCT
T ss_pred cHHHHHHHHHhCccceEeeccCCCCCHHHHHHHHhcCcccCeeeccCCCCcHHHHHHHHHhcCccCeeECcCCcCCHHHH
Confidence 544444443 48899999999999986 34556688999999999999987543 3344678999999999999986543
Q ss_pred cCc-cCcCCCceEEeecc
Q 005045 348 PSL-GNCQKLLVLNLSSN 364 (717)
Q Consensus 348 ~~~-~~l~~L~~L~l~~N 364 (717)
..+ ..++.+....+..+
T Consensus 531 ~~l~~~~p~l~~~~~~~~ 548 (592)
T 3ogk_B 531 DLMQMARPYWNIELIPSR 548 (592)
T ss_dssp TGGGGCCTTEEEEEECCC
T ss_pred HHHHHhCCCcEEEEecCc
Confidence 433 35677766666554
No 331
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.92 E-value=2.3e-25 Score=221.07 Aligned_cols=206 Identities=18% Similarity=0.188 Sum_probs=164.9
Q ss_pred cCcCCCCcCCcCCCCCCEEECCCCcccccCCcCCCCCCCCCEEEccCcc-ccccCCccccCCCCCCEEeccC-CcCcccC
Q 005045 21 YLSGKIPTNLSHCTELRSFEASVNDFVGQIPNQLSSLTKLEIIGLGGSN-LTGNVPAWIGNFSSLKALSLAW-NNLRGSI 98 (717)
Q Consensus 21 ~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~-l~~~~p~~~~~l~~L~~L~L~~-n~l~~~~ 98 (717)
+++ .+|. +. ++|++|++++|++++..+..|.++++|++|++++|+ ++...+..|.++++|++|+|++ |++++..
T Consensus 22 ~l~-~ip~-~~--~~l~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~ 97 (239)
T 2xwt_C 22 DIQ-RIPS-LP--PSTQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYID 97 (239)
T ss_dssp SCS-SCCC-CC--TTCCEEEEESCCCSEECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEEC
T ss_pred Ccc-ccCC-CC--CcccEEEEeCCcceEECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEcC
Confidence 365 5666 44 378888888888887767678888888999998886 8866666788888899999988 8888777
Q ss_pred ChhhhccCCCCeEeccCCCCCCCCCccccCCCCcc---EEEcccC-cccccCCcccccCCCCcc-eeecccccccccCCc
Q 005045 99 PNELGQLSGLGFFTLYGNFISGIIPSSIYNISSIY---YFSVTQN-QLHGQLPTDVGLTLPNLK-IFAGAVNYFTGSIPV 173 (717)
Q Consensus 99 ~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~---~L~L~~N-~l~~~l~~~~~~~l~~L~-~L~l~~n~l~~~~~~ 173 (717)
+..|.++++|++|+|++|.+++ +|. |..+++|+ +|++++| .++ .+|...|..+++|+ .|++++|.++.+.+.
T Consensus 98 ~~~f~~l~~L~~L~l~~n~l~~-lp~-~~~l~~L~~L~~L~l~~N~~l~-~i~~~~~~~l~~L~~~L~l~~n~l~~i~~~ 174 (239)
T 2xwt_C 98 PDALKELPLLKFLGIFNTGLKM-FPD-LTKVYSTDIFFILEITDNPYMT-SIPVNAFQGLCNETLTLKLYNNGFTSVQGY 174 (239)
T ss_dssp TTSEECCTTCCEEEEEEECCCS-CCC-CTTCCBCCSEEEEEEESCTTCC-EECTTTTTTTBSSEEEEECCSCCCCEECTT
T ss_pred HHHhCCCCCCCEEeCCCCCCcc-ccc-cccccccccccEEECCCCcchh-hcCcccccchhcceeEEEcCCCCCcccCHh
Confidence 7788888889999998888885 454 88888887 8899988 887 77777777888888 889988888855555
Q ss_pred cCCCCCCCCEEeccCcc-ccccCCCCccCC-CCCCeeeccccccCCcccCchhhhhhhccCCCCCEEEeecC
Q 005045 174 SLSNASNLQVLDFAENG-LTGTIPGNFGSL-KDLVRLNFDQNELGSREIGDLNFLKFLANCTSLEVLGLARN 243 (717)
Q Consensus 174 ~~~~l~~L~~L~l~~N~-l~~~~~~~~~~l-~~L~~L~l~~N~l~~~~~~~~~~~~~~~~l~~L~~L~L~~N 243 (717)
.|.. ++|++|++++|+ ++...+..|..+ ++|+.|++++|+++.++ .. .+++|+.|+++++
T Consensus 175 ~~~~-~~L~~L~L~~n~~l~~i~~~~~~~l~~~L~~L~l~~N~l~~l~------~~---~~~~L~~L~l~~~ 236 (239)
T 2xwt_C 175 AFNG-TKLDAVYLNKNKYLTVIDKDAFGGVYSGPSLLDVSQTSVTALP------SK---GLEHLKELIARNT 236 (239)
T ss_dssp TTTT-CEEEEEECTTCTTCCEECTTTTTTCSBCCSEEECTTCCCCCCC------CT---TCTTCSEEECTTC
T ss_pred hcCC-CCCCEEEcCCCCCcccCCHHHhhccccCCcEEECCCCccccCC------hh---HhccCceeeccCc
Confidence 5555 789999999995 886777788888 88999999999888776 22 5678888888775
No 332
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.92 E-value=1.8e-26 Score=244.00 Aligned_cols=264 Identities=15% Similarity=0.225 Sum_probs=159.9
Q ss_pred EEeccCCcCcccCChhhhccCCCCeEeccCCCCCCCCC----ccccCCC-CccEEEcccCcccccCCcccccCCCCccee
Q 005045 86 ALSLAWNNLRGSIPNELGQLSGLGFFTLYGNFISGIIP----SSIYNIS-SIYYFSVTQNQLHGQLPTDVGLTLPNLKIF 160 (717)
Q Consensus 86 ~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~----~~~~~l~-~L~~L~L~~N~l~~~l~~~~~~~l~~L~~L 160 (717)
.++|++|.+++.+|..+...++|++|+|++|.+++..+ ..|.+++ +|++|+|++|.+++..+..+. .+
T Consensus 2 ~~~ls~n~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~-~~------ 74 (362)
T 3goz_A 2 NYKLTLHPGSNPVEEFTSIPHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELV-QI------ 74 (362)
T ss_dssp EEECCCCTTCCHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHH-HH------
T ss_pred ccccccccchHHHHHHHhCCCCceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHH-HH------
Confidence 45778888887777666666668888888888876666 6677777 788888888887633232222 21
Q ss_pred ecccccccccCCccCCC-CCCCCEEeccCccccccCCCC----ccCC-CCCCeeeccccccCCcccCchhhhhhhccC-C
Q 005045 161 AGAVNYFTGSIPVSLSN-ASNLQVLDFAENGLTGTIPGN----FGSL-KDLVRLNFDQNELGSREIGDLNFLKFLANC-T 233 (717)
Q Consensus 161 ~l~~n~l~~~~~~~~~~-l~~L~~L~l~~N~l~~~~~~~----~~~l-~~L~~L~l~~N~l~~~~~~~~~~~~~~~~l-~ 233 (717)
+.. .++|++|+|++|.+++..+.. +..+ ++|++|++++|.++..+...+ ...+..+ +
T Consensus 75 --------------l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l--~~~l~~~~~ 138 (362)
T 3goz_A 75 --------------LAAIPANVTSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEF--KQAFSNLPA 138 (362)
T ss_dssp --------------HHTSCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHH--HHHHTTSCT
T ss_pred --------------HhccCCCccEEECcCCcCChHHHHHHHHHHHhCCCCccEEECcCCcCCcHHHHHH--HHHHHhCCC
Confidence 111 144555555555554333332 2222 455555555555554431111 1223332 4
Q ss_pred CCCEEEeecCcccCcCchhh----hhccccccEEecCCCccCCCCCccc----cCC-CCCCEEEccCCcCccc----cch
Q 005045 234 SLEVLGLARNSFGGEMPISI----ANLSTHLRRLTMGENLMHGNIPVGI----GNL-VNLNLLGLEGNNLSGS----VPE 300 (717)
Q Consensus 234 ~L~~L~L~~N~l~~~~p~~~----~~~~~~L~~L~l~~N~l~~~~~~~~----~~l-~~L~~L~L~~N~l~~~----~~~ 300 (717)
+|++|+|++|.+++..+..+ ...+++|++|++++|.+++..+..+ ..+ ++|++|+|++|+|+.. ++.
T Consensus 139 ~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~i~~~~~~~l~~ 218 (362)
T 3goz_A 139 SITSLNLRGNDLGIKSSDELIQILAAIPANVNSLNLRGNNLASKNCAELAKFLASIPASVTSLDLSANLLGLKSYAELAY 218 (362)
T ss_dssp TCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHH
T ss_pred ceeEEEccCCcCCHHHHHHHHHHHhcCCccccEeeecCCCCchhhHHHHHHHHHhCCCCCCEEECCCCCCChhHHHHHHH
Confidence 66666666666664333332 2232366666666666665554433 334 4788888888888752 445
Q ss_pred hhhcC-CCCCeEEcccCcCCCCCCc----ccccccccceeeccccccccc-------CCcCccCcCCCceEEeecccCCC
Q 005045 301 VIGRL-NKLEGLGLNVNKFSGLIPS----SLGNLTILTRLWMEENRLEGS-------IPPSLGNCQKLLVLNLSSNDLNG 368 (717)
Q Consensus 301 ~~~~l-~~L~~L~Ls~N~l~~~~~~----~~~~l~~L~~L~L~~N~l~~~-------~p~~~~~l~~L~~L~l~~N~l~~ 368 (717)
.+..+ ++|++|+|++|++++..+. .+..+++|+.|+|++|.+.+. ++..+..+++|+.||+++|++.+
T Consensus 219 ~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~~~~l~~L~~L~L~~n~l~~i~~~~~~~l~~~~~~l~~L~~LdL~~N~l~~ 298 (362)
T 3goz_A 219 IFSSIPNHVVSLNLCLNCLHGPSLENLKLLKDSLKHLQTVYLDYDIVKNMSKEQCKALGAAFPNIQKIILVDKNGKEIHP 298 (362)
T ss_dssp HHHHSCTTCCEEECCSSCCCCCCHHHHHHTTTTTTTCSEEEEEHHHHTTCCHHHHHHHHTTSTTCCEEEEECTTSCBCCG
T ss_pred HHhcCCCCceEEECcCCCCCcHHHHHHHHHHhcCCCccEEEeccCCccccCHHHHHHHHHHhccCCceEEEecCCCcCCC
Confidence 55553 4888888888888876552 345668888888888885432 34467788889999999999876
Q ss_pred CCCc
Q 005045 369 TIPK 372 (717)
Q Consensus 369 ~~p~ 372 (717)
..|.
T Consensus 299 ~~~~ 302 (362)
T 3goz_A 299 SHSI 302 (362)
T ss_dssp GGCH
T ss_pred cchH
Confidence 5443
No 333
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.92 E-value=3.5e-27 Score=267.29 Aligned_cols=348 Identities=15% Similarity=0.156 Sum_probs=186.2
Q ss_pred eecEEEcCCCcCcCCCCcCCc-CCCCCCEEECCCC-ccccc-CCcCCCCCCCCCEEEccCccccccCCcccc----CCCC
Q 005045 11 MTQDLNLTYNYLSGKIPTNLS-HCTELRSFEASVN-DFVGQ-IPNQLSSLTKLEIIGLGGSNLTGNVPAWIG----NFSS 83 (717)
Q Consensus 11 ~~~~L~L~~n~l~~~~~~~~~-~l~~L~~L~L~~n-~l~~~-~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~----~l~~ 83 (717)
.+++|+|++|.+++..+..+. .+++|++|+|++| .++.. ++..+.++++|++|+|++|.+++..+.++. .+++
T Consensus 106 ~L~~L~L~~~~~~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~~~~ 185 (594)
T 2p1m_B 106 WLEEIRLKRMVVTDDCLELIAKSFKNFKVLVLSSCEGFSTDGLAAIAATCRNLKELDLRESDVDDVSGHWLSHFPDTYTS 185 (594)
T ss_dssp TCCEEEEESCBCCHHHHHHHHHHCTTCCEEEEESCEEEEHHHHHHHHHHCTTCCEEECTTCEEECCCGGGGGGSCTTCCC
T ss_pred CCCeEEeeCcEEcHHHHHHHHHhCCCCcEEeCCCcCCCCHHHHHHHHHhCCCCCEEeCcCCccCCcchHHHHHHhhcCCc
Confidence 455555555555544444443 4555555555555 33321 222233455566666665555543333332 3445
Q ss_pred CCEEeccCCc--Ccc-cCChhhhccCCCCeEeccCC-CCCCCCCccccCCCCccEEEcccCc------------------
Q 005045 84 LKALSLAWNN--LRG-SIPNELGQLSGLGFFTLYGN-FISGIIPSSIYNISSIYYFSVTQNQ------------------ 141 (717)
Q Consensus 84 L~~L~L~~n~--l~~-~~~~~~~~l~~L~~L~L~~N-~i~~~~~~~~~~l~~L~~L~L~~N~------------------ 141 (717)
|++|+|++|. ++. .++..+..+++|++|+|++| .+.+ .+..+..+++|+.|+++++.
T Consensus 186 L~~L~l~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~-l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~~l~~~ 264 (594)
T 2p1m_B 186 LVSLNISCLASEVSFSALERLVTRCPNLKSLKLNRAVPLEK-LATLLQRAPQLEELGTGGYTAEVRPDVYSGLSVALSGC 264 (594)
T ss_dssp CCEEECTTCCSCCCHHHHHHHHHHCTTCCEEECCTTSCHHH-HHHHHHHCTTCSEEECSBCCCCCCHHHHHHHHHHHHTC
T ss_pred CcEEEecccCCcCCHHHHHHHHHhCCCCcEEecCCCCcHHH-HHHHHhcCCcceEcccccccCccchhhHHHHHHHHhcC
Confidence 6666665554 110 01111233455666666555 2222 34444455555555533331
Q ss_pred --------ccc----cCCcccccCCCCcceeecccccccccCCc-cCCCCCCCCEEeccCcccccc-CCCCccCCCCCCe
Q 005045 142 --------LHG----QLPTDVGLTLPNLKIFAGAVNYFTGSIPV-SLSNASNLQVLDFAENGLTGT-IPGNFGSLKDLVR 207 (717)
Q Consensus 142 --------l~~----~l~~~~~~~l~~L~~L~l~~n~l~~~~~~-~~~~l~~L~~L~l~~N~l~~~-~~~~~~~l~~L~~ 207 (717)
+.+ .++. +...+++|+.|++++|.++..... .+..+++|++|++++| ++.. .+.....+++|++
T Consensus 265 ~~L~~Ls~~~~~~~~~l~~-~~~~~~~L~~L~L~~~~l~~~~l~~~~~~~~~L~~L~l~~~-~~~~~l~~l~~~~~~L~~ 342 (594)
T 2p1m_B 265 KELRCLSGFWDAVPAYLPA-VYSVCSRLTTLNLSYATVQSYDLVKLLCQCPKLQRLWVLDY-IEDAGLEVLASTCKDLRE 342 (594)
T ss_dssp TTCCEEECCBTCCGGGGGG-GHHHHTTCCEEECTTCCCCHHHHHHHHTTCTTCCEEEEEGG-GHHHHHHHHHHHCTTCCE
T ss_pred CCcccccCCcccchhhHHH-HHHhhCCCCEEEccCCCCCHHHHHHHHhcCCCcCEEeCcCc-cCHHHHHHHHHhCCCCCE
Confidence 100 0111 111356666777766665533222 2445666777777666 3321 1112224666777
Q ss_pred eecc---------ccccCCcccCchhhhhhhccCCCCCEEEeecCcccCcCchhhhhccccccEEecC--C----CccCC
Q 005045 208 LNFD---------QNELGSREIGDLNFLKFLANCTSLEVLGLARNSFGGEMPISIANLSTHLRRLTMG--E----NLMHG 272 (717)
Q Consensus 208 L~l~---------~N~l~~~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~~~~L~~L~l~--~----N~l~~ 272 (717)
|+++ .+.++... ......++++|+.|.++.|.+++..+..+....++|+.|+++ + |.++.
T Consensus 343 L~L~~~~~~g~~~~~~l~~~~-----l~~l~~~~~~L~~L~~~~~~l~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~ 417 (594)
T 2p1m_B 343 LRVFPSEPFVMEPNVALTEQG-----LVSVSMGCPKLESVLYFCRQMTNAALITIARNRPNMTRFRLCIIEPKAPDYLTL 417 (594)
T ss_dssp EEEECSCTTCSSCSSCCCHHH-----HHHHHHHCTTCCEEEEEESCCCHHHHHHHHHHCTTCCEEEEEESSTTCCCTTTC
T ss_pred EEEecCcccccccCCCCCHHH-----HHHHHHhchhHHHHHHhcCCcCHHHHHHHHhhCCCcceeEeecccCCCcccccC
Confidence 7663 23443322 112223467778887777777765555555433578888887 3 44542
Q ss_pred CC-----CccccCCCCCCEEEccCCcCccccchhhhc-CCCCCeEEcccCcCCCCCCccc-ccccccceeeccccccccc
Q 005045 273 NI-----PVGIGNLVNLNLLGLEGNNLSGSVPEVIGR-LNKLEGLGLNVNKFSGLIPSSL-GNLTILTRLWMEENRLEGS 345 (717)
Q Consensus 273 ~~-----~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~-l~~L~~L~Ls~N~l~~~~~~~~-~~l~~L~~L~L~~N~l~~~ 345 (717)
.. +..+.++++|+.|+|++ .+++..+..+.. +++|+.|+|++|.+++..+..+ ..+++|+.|+|++|.+++.
T Consensus 418 ~~~~~~~~~l~~~~~~L~~L~L~~-~l~~~~~~~l~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~L~~L~L~~n~~~~~ 496 (594)
T 2p1m_B 418 EPLDIGFGAIVEHCKDLRRLSLSG-LLTDKVFEYIGTYAKKMEMLSVAFAGDSDLGMHHVLSGCDSLRKLEIRDCPFGDK 496 (594)
T ss_dssp CCTHHHHHHHHHHCTTCCEEECCS-SCCHHHHHHHHHHCTTCCEEEEESCCSSHHHHHHHHHHCTTCCEEEEESCSCCHH
T ss_pred CchhhHHHHHHhhCCCccEEeecC-cccHHHHHHHHHhchhccEeeccCCCCcHHHHHHHHhcCCCcCEEECcCCCCcHH
Confidence 11 11255677888888876 666555555555 7788888888888765544444 5578888888888887544
Q ss_pred CCc-CccCcCCCceEEeecccCC
Q 005045 346 IPP-SLGNCQKLLVLNLSSNDLN 367 (717)
Q Consensus 346 ~p~-~~~~l~~L~~L~l~~N~l~ 367 (717)
.+. .+..+++|+.|++++|+++
T Consensus 497 ~~~~~~~~l~~L~~L~l~~~~~~ 519 (594)
T 2p1m_B 497 ALLANASKLETMRSLWMSSCSVS 519 (594)
T ss_dssp HHHHTGGGGGGSSEEEEESSCCB
T ss_pred HHHHHHHhCCCCCEEeeeCCCCC
Confidence 333 3455788888888888774
No 334
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.92 E-value=1.2e-24 Score=215.84 Aligned_cols=206 Identities=16% Similarity=0.239 Sum_probs=156.6
Q ss_pred ccccCCcCCCCCCCCCEEEccCccccccCCccccCCCCCCEEeccCCc-CcccCChhhhccCCCCeEeccC-CCCCCCCC
Q 005045 46 FVGQIPNQLSSLTKLEIIGLGGSNLTGNVPAWIGNFSSLKALSLAWNN-LRGSIPNELGQLSGLGFFTLYG-NFISGIIP 123 (717)
Q Consensus 46 l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~L~~-N~i~~~~~ 123 (717)
++ .+|. +.. +|++|+|++|++++..+..|.++++|++|+|++|+ ++.+.+.+|.++++|++|+|++ |+++.+.+
T Consensus 23 l~-~ip~-~~~--~l~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~~ 98 (239)
T 2xwt_C 23 IQ-RIPS-LPP--STQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDP 98 (239)
T ss_dssp CS-SCCC-CCT--TCCEEEEESCCCSEECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEECT
T ss_pred cc-ccCC-CCC--cccEEEEeCCcceEECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEcCH
Confidence 55 5665 433 78888888888886666678888888888888886 8766667788888888888887 88887777
Q ss_pred ccccCCCCccEEEcccCcccccCCcccccCCCCcc---eeecccc-cccccCCccCCCCCCCC-EEeccCccccccCCCC
Q 005045 124 SSIYNISSIYYFSVTQNQLHGQLPTDVGLTLPNLK---IFAGAVN-YFTGSIPVSLSNASNLQ-VLDFAENGLTGTIPGN 198 (717)
Q Consensus 124 ~~~~~l~~L~~L~L~~N~l~~~l~~~~~~~l~~L~---~L~l~~n-~l~~~~~~~~~~l~~L~-~L~l~~N~l~~~~~~~ 198 (717)
..|.++++|++|++++|+++ .+|. +..+++|+ .|++++| .++...+..|.++++|+ +|++++|+++...+..
T Consensus 99 ~~f~~l~~L~~L~l~~n~l~-~lp~--~~~l~~L~~L~~L~l~~N~~l~~i~~~~~~~l~~L~~~L~l~~n~l~~i~~~~ 175 (239)
T 2xwt_C 99 DALKELPLLKFLGIFNTGLK-MFPD--LTKVYSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNGFTSVQGYA 175 (239)
T ss_dssp TSEECCTTCCEEEEEEECCC-SCCC--CTTCCBCCSEEEEEEESCTTCCEECTTTTTTTBSSEEEEECCSCCCCEECTTT
T ss_pred HHhCCCCCCCEEeCCCCCCc-cccc--cccccccccccEEECCCCcchhhcCcccccchhcceeEEEcCCCCCcccCHhh
Confidence 78888888888888888887 5775 55777777 8888888 88877777788888888 8888888888444444
Q ss_pred ccCCCCCCeeeccccc-cCCcccCchhhhhhhccC-CCCCEEEeecCcccCcCchhhhhccccccEEecCCCc
Q 005045 199 FGSLKDLVRLNFDQNE-LGSREIGDLNFLKFLANC-TSLEVLGLARNSFGGEMPISIANLSTHLRRLTMGENL 269 (717)
Q Consensus 199 ~~~l~~L~~L~l~~N~-l~~~~~~~~~~~~~~~~l-~~L~~L~L~~N~l~~~~p~~~~~~~~~L~~L~l~~N~ 269 (717)
|.. ++|+.|++++|+ ++.++ +..|.++ ++|+.|++++|.++ .+|.. .+ ++|+.|+++++.
T Consensus 176 ~~~-~~L~~L~L~~n~~l~~i~------~~~~~~l~~~L~~L~l~~N~l~-~l~~~--~~-~~L~~L~l~~~~ 237 (239)
T 2xwt_C 176 FNG-TKLDAVYLNKNKYLTVID------KDAFGGVYSGPSLLDVSQTSVT-ALPSK--GL-EHLKELIARNTW 237 (239)
T ss_dssp TTT-CEEEEEECTTCTTCCEEC------TTTTTTCSBCCSEEECTTCCCC-CCCCT--TC-TTCSEEECTTC-
T ss_pred cCC-CCCCEEEcCCCCCcccCC------HHHhhccccCCcEEECCCCccc-cCChh--Hh-ccCceeeccCcc
Confidence 444 788888888884 87776 5567777 88888888888888 55544 22 478888887763
No 335
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.91 E-value=8.8e-27 Score=248.93 Aligned_cols=193 Identities=19% Similarity=0.250 Sum_probs=122.4
Q ss_pred CCCCCCCEEeccCccccc----cCCCCccCCCCCCeeeccccccCCcccCchhhhhhhccC---------CCCCEEEeec
Q 005045 176 SNASNLQVLDFAENGLTG----TIPGNFGSLKDLVRLNFDQNELGSREIGDLNFLKFLANC---------TSLEVLGLAR 242 (717)
Q Consensus 176 ~~l~~L~~L~l~~N~l~~----~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~l---------~~L~~L~L~~ 242 (717)
..+++|++|+|++|.++. .++..+..+++|++|+|++|.++..... .++..+..+ ++|++|+|++
T Consensus 91 ~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~--~l~~~l~~l~~~~~~~~~~~L~~L~L~~ 168 (386)
T 2ca6_A 91 LKCPKLHTVRLSDNAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGA--KIARALQELAVNKKAKNAPPLRSIICGR 168 (386)
T ss_dssp TTCTTCCEEECCSCCCCTTTHHHHHHHHHHCTTCCEEECCSSCCHHHHHH--HHHHHHHHHHHHHHHHTCCCCCEEECCS
T ss_pred hhCCcccEEECCCCcCCHHHHHHHHHHHHhCCCCCEEECcCCCCCHHHHH--HHHHHHHHHhhhhhcccCCCCcEEECCC
Confidence 444555555555555543 2334444555555555555555432211 112223333 6666666666
Q ss_pred Cccc-CcCc---hhhhhccccccEEecCCCccCC-----CCCccccCCCCCCEEEccCCcCc----cccchhhhcCCCCC
Q 005045 243 NSFG-GEMP---ISIANLSTHLRRLTMGENLMHG-----NIPVGIGNLVNLNLLGLEGNNLS----GSVPEVIGRLNKLE 309 (717)
Q Consensus 243 N~l~-~~~p---~~~~~~~~~L~~L~l~~N~l~~-----~~~~~~~~l~~L~~L~L~~N~l~----~~~~~~~~~l~~L~ 309 (717)
|.++ ..+| ..+... ++|++|++++|.++. ..+..+..+++|+.|+|++|.++ ..+|..+..+++|+
T Consensus 169 n~l~~~~~~~l~~~l~~~-~~L~~L~L~~n~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~~~l~~~~~L~ 247 (386)
T 2ca6_A 169 NRLENGSMKEWAKTFQSH-RLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLR 247 (386)
T ss_dssp SCCTGGGHHHHHHHHHHC-TTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCC
T ss_pred CCCCcHHHHHHHHHHHhC-CCcCEEECcCCCCCHhHHHHHHHHHhhcCCCccEEECcCCCCCcHHHHHHHHHHccCCCcC
Confidence 6665 2233 233344 367777777776652 23336777888888888888885 46777888888888
Q ss_pred eEEcccCcCCCC----CCccc--ccccccceeecccccccc----cCCcCc-cCcCCCceEEeecccCCCCCC
Q 005045 310 GLGLNVNKFSGL----IPSSL--GNLTILTRLWMEENRLEG----SIPPSL-GNCQKLLVLNLSSNDLNGTIP 371 (717)
Q Consensus 310 ~L~Ls~N~l~~~----~~~~~--~~l~~L~~L~L~~N~l~~----~~p~~~-~~l~~L~~L~l~~N~l~~~~p 371 (717)
+|+|++|++++. ++..+ +.+++|+.|+|++|.+++ .+|..+ .++++|+.|++++|++++..|
T Consensus 248 ~L~L~~n~i~~~~~~~l~~~l~~~~~~~L~~L~L~~n~i~~~g~~~l~~~l~~~l~~L~~L~l~~N~l~~~~~ 320 (386)
T 2ca6_A 248 ELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRFSEEDD 320 (386)
T ss_dssp EEECTTCCCCHHHHHHHHHHHHTCSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEEECTTSBSCTTSH
T ss_pred EEECCCCCCchhhHHHHHHHHhhccCCCeEEEECcCCcCCHHHHHHHHHHHHhcCCCceEEEccCCcCCcchh
Confidence 888888888765 34455 337888999999998886 377776 568899999999999987664
No 336
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.91 E-value=1.8e-23 Score=208.97 Aligned_cols=179 Identities=19% Similarity=0.289 Sum_probs=108.2
Q ss_pred ecEEEcCCCcCcCCCCcCCcCCCCCCEEECCCCcccccCCcCCCCCCCCCEEEccCccccccCCccccCCCCCCEEeccC
Q 005045 12 TQDLNLTYNYLSGKIPTNLSHCTELRSFEASVNDFVGQIPNQLSSLTKLEIIGLGGSNLTGNVPAWIGNFSSLKALSLAW 91 (717)
Q Consensus 12 ~~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~ 91 (717)
.+++++++++++ .+|..+. ++|+.|+|++|.+++..+..|.++++|++|+|++|.|++..+..|..+++|++|+|++
T Consensus 16 ~~~l~~~~~~l~-~~p~~~~--~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~ 92 (251)
T 3m19_A 16 KKEVDCQGKSLD-SVPSGIP--ADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLAN 92 (251)
T ss_dssp GTEEECTTCCCS-SCCSCCC--TTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTT
T ss_pred CeEEecCCCCcc-ccCCCCC--CCCCEEEccCCCcCccCHhHhcCcccCCEEECCCCcCCccCHhHhccCCcCCEEECCC
Confidence 456666666666 4555444 4666666666666655555666666666666666666655555566666666666666
Q ss_pred CcCcccCChhhhccCCCCeEeccCCCCCCCCCccccCCCCccEEEcccCcccccCCcccccCCCCcceeecccccccccC
Q 005045 92 NNLRGSIPNELGQLSGLGFFTLYGNFISGIIPSSIYNISSIYYFSVTQNQLHGQLPTDVGLTLPNLKIFAGAVNYFTGSI 171 (717)
Q Consensus 92 n~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~~l~~~~~~~l~~L~~L~l~~n~l~~~~ 171 (717)
|++++..+..|..+++|++|+|++|+|+++.+..|.++++|++|+|++|+++ .++
T Consensus 93 n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~-~~~------------------------ 147 (251)
T 3m19_A 93 NQLASLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQ-SIP------------------------ 147 (251)
T ss_dssp SCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC-CCC------------------------
T ss_pred CcccccChhHhcccCCCCEEEcCCCcCCCcChhHhccCCcccEEECcCCcCC-ccC------------------------
Confidence 6666555555666666666666666666555555566666666666666665 333
Q ss_pred CccCCCCCCCCEEeccCccccccCCCCccCCCCCCeeeccccccCCc
Q 005045 172 PVSLSNASNLQVLDFAENGLTGTIPGNFGSLKDLVRLNFDQNELGSR 218 (717)
Q Consensus 172 ~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~ 218 (717)
+..|..+++|++|+|++|++++..+..|..+++|+.|++++|.+...
T Consensus 148 ~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~ 194 (251)
T 3m19_A 148 AGAFDKLTNLQTLSLSTNQLQSVPHGAFDRLGKLQTITLFGNQFDCS 194 (251)
T ss_dssp TTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCCBCTT
T ss_pred HHHcCcCcCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCceeCC
Confidence 33455555566666666666555555555566666666666655543
No 337
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.91 E-value=2.2e-26 Score=245.76 Aligned_cols=272 Identities=23% Similarity=0.250 Sum_probs=143.1
Q ss_pred CCEEECCCCcccccCCcCCCCCCCCCEEEccCccccccCC----ccccCCCCCCEEeccCCc---CcccCChhh------
Q 005045 36 LRSFEASVNDFVGQIPNQLSSLTKLEIIGLGGSNLTGNVP----AWIGNFSSLKALSLAWNN---LRGSIPNEL------ 102 (717)
Q Consensus 36 L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p----~~~~~l~~L~~L~L~~n~---l~~~~~~~~------ 102 (717)
|+...++...+. .++..+..+++|++|+|++|.|++..+ ..+..+++|++|+|++|. +++.+|..+
T Consensus 11 L~~~~l~~~~~~-~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~ 89 (386)
T 2ca6_A 11 LKLDAITTEDEK-SVFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQA 89 (386)
T ss_dssp CEESSCCSHHHH-TTSHHHHHCSCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHH
T ss_pred cccCCCCHHHHH-HHHHHHhcCCCccEEECCCCCCCHHHHHHHHHHHHhCCCccEEeCcccccCccccchhHHHHHHHHH
Confidence 333344444444 555666777778888888887775433 335677788888887754 333445444
Q ss_pred -hccCCCCeEeccCCCCCC----CCCccccCCCCccEEEcccCcccccCCcccccCCCCcceeecccccccccCCccCCC
Q 005045 103 -GQLSGLGFFTLYGNFISG----IIPSSIYNISSIYYFSVTQNQLHGQLPTDVGLTLPNLKIFAGAVNYFTGSIPVSLSN 177 (717)
Q Consensus 103 -~~l~~L~~L~L~~N~i~~----~~~~~~~~l~~L~~L~L~~N~l~~~l~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~ 177 (717)
..+++|++|+|++|.++. .++..+..+++|++|+|++|.+++..+..+...+..+ ..|.+.+ .
T Consensus 90 l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l-----~~~~~~~-------~ 157 (386)
T 2ca6_A 90 LLKCPKLHTVRLSDNAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQEL-----AVNKKAK-------N 157 (386)
T ss_dssp HTTCTTCCEEECCSCCCCTTTHHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHH-----HHHHHHH-------T
T ss_pred HhhCCcccEEECCCCcCCHHHHHHHHHHHHhCCCCCEEECcCCCCCHHHHHHHHHHHHHH-----hhhhhcc-------c
Confidence 566777777777777775 3555667777777777777777522222221111000 0011110 0
Q ss_pred CCCCCEEeccCcccc-ccCC---CCccCCCCCCeeeccccccCCcccCchhhhhhhccCCCCCEEEeecCccc----CcC
Q 005045 178 ASNLQVLDFAENGLT-GTIP---GNFGSLKDLVRLNFDQNELGSREIGDLNFLKFLANCTSLEVLGLARNSFG----GEM 249 (717)
Q Consensus 178 l~~L~~L~l~~N~l~-~~~~---~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~l~~L~~L~L~~N~l~----~~~ 249 (717)
.++|++|++++|+++ ...+ ..+..+++|++|++++|.++..++..+. +..+..+++|+.|+|++|.++ ..+
T Consensus 158 ~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~g~~~l~-~~~l~~~~~L~~L~Ls~n~l~~~g~~~l 236 (386)
T 2ca6_A 158 APPLRSIICGRNRLENGSMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLL-LEGLAYCQELKVLDLQDNTFTHLGSSAL 236 (386)
T ss_dssp CCCCCEEECCSSCCTGGGHHHHHHHHHHCTTCCEEECCSSCCCHHHHHHHH-HTTGGGCTTCCEEECCSSCCHHHHHHHH
T ss_pred CCCCcEEECCCCCCCcHHHHHHHHHHHhCCCcCEEECcCCCCCHhHHHHHH-HHHhhcCCCccEEECcCCCCCcHHHHHH
Confidence 056666666666665 2222 2344555666666666655532111110 124555666666666666663 234
Q ss_pred chhhhhccccccEEecCCCccCCC----CCccc--cCCCCCCEEEccCCcCcc----ccchhh-hcCCCCCeEEcccCcC
Q 005045 250 PISIANLSTHLRRLTMGENLMHGN----IPVGI--GNLVNLNLLGLEGNNLSG----SVPEVI-GRLNKLEGLGLNVNKF 318 (717)
Q Consensus 250 p~~~~~~~~~L~~L~l~~N~l~~~----~~~~~--~~l~~L~~L~L~~N~l~~----~~~~~~-~~l~~L~~L~Ls~N~l 318 (717)
|..+..+ ++|++|+|++|.+++. ++..+ +.+++|+.|+|++|.++. .+|..+ .++++|++|+|++|++
T Consensus 237 ~~~l~~~-~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~~L~~L~L~~n~i~~~g~~~l~~~l~~~l~~L~~L~l~~N~l 315 (386)
T 2ca6_A 237 AIALKSW-PNLRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRF 315 (386)
T ss_dssp HHHGGGC-TTCCEEECTTCCCCHHHHHHHHHHHHTCSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEEECTTSBS
T ss_pred HHHHccC-CCcCEEECCCCCCchhhHHHHHHHHhhccCCCeEEEECcCCcCCHHHHHHHHHHHHhcCCCceEEEccCCcC
Confidence 4444444 2455555555554432 23333 225556666666666654 244444 3455666666666665
Q ss_pred CCCC
Q 005045 319 SGLI 322 (717)
Q Consensus 319 ~~~~ 322 (717)
++..
T Consensus 316 ~~~~ 319 (386)
T 2ca6_A 316 SEED 319 (386)
T ss_dssp CTTS
T ss_pred Ccch
Confidence 5443
No 338
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.91 E-value=2.6e-23 Score=207.75 Aligned_cols=180 Identities=21% Similarity=0.227 Sum_probs=138.3
Q ss_pred CCCEEEccCccccccCCccccCCCCCCEEeccCCcCcccCChhhhccCCCCeEeccCCCCCCCCCccccCCCCccEEEcc
Q 005045 59 KLEIIGLGGSNLTGNVPAWIGNFSSLKALSLAWNNLRGSIPNELGQLSGLGFFTLYGNFISGIIPSSIYNISSIYYFSVT 138 (717)
Q Consensus 59 ~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~ 138 (717)
+.++++++++.++ .+|..+. ++|+.|+|++|.+++..+..|.++++|++|+|++|.|+++.+..|.++++|++|+|+
T Consensus 15 ~~~~l~~~~~~l~-~~p~~~~--~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~ 91 (251)
T 3m19_A 15 GKKEVDCQGKSLD-SVPSGIP--ADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLA 91 (251)
T ss_dssp GGTEEECTTCCCS-SCCSCCC--TTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECT
T ss_pred CCeEEecCCCCcc-ccCCCCC--CCCCEEEccCCCcCccCHhHhcCcccCCEEECCCCcCCccCHhHhccCCcCCEEECC
Confidence 4556666666666 5555444 466677777777766666666667777777777777766666666777777777777
Q ss_pred cCcccccCCcccccCCCCcceeecccccccccCCccCCCCCCCCEEeccCccccccCCCCccCCCCCCeeeccccccCCc
Q 005045 139 QNQLHGQLPTDVGLTLPNLKIFAGAVNYFTGSIPVSLSNASNLQVLDFAENGLTGTIPGNFGSLKDLVRLNFDQNELGSR 218 (717)
Q Consensus 139 ~N~l~~~l~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~ 218 (717)
+|+++ .++...+..+++|++|++++|.+++..+..|..+++|++|+|++|+|++..+..|..+++|+.|+|++|+++.+
T Consensus 92 ~n~l~-~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~ 170 (251)
T 3m19_A 92 NNQLA-SLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLSTNQLQSV 170 (251)
T ss_dssp TSCCC-CCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCC
T ss_pred CCccc-ccChhHhcccCCCCEEEcCCCcCCCcChhHhccCCcccEEECcCCcCCccCHHHcCcCcCCCEEECCCCcCCcc
Confidence 77776 66666666677777777777777766667788999999999999999977777899999999999999999988
Q ss_pred ccCchhhhhhhccCCCCCEEEeecCcccCc
Q 005045 219 EIGDLNFLKFLANCTSLEVLGLARNSFGGE 248 (717)
Q Consensus 219 ~~~~~~~~~~~~~l~~L~~L~L~~N~l~~~ 248 (717)
+ +..|..+++|+.|+|++|.+.+.
T Consensus 171 ~------~~~~~~l~~L~~L~l~~N~~~c~ 194 (251)
T 3m19_A 171 P------HGAFDRLGKLQTITLFGNQFDCS 194 (251)
T ss_dssp C------TTTTTTCTTCCEEECCSCCBCTT
T ss_pred C------HHHHhCCCCCCEEEeeCCceeCC
Confidence 7 56788999999999999999865
No 339
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.91 E-value=5.4e-24 Score=219.91 Aligned_cols=229 Identities=16% Similarity=0.120 Sum_probs=136.0
Q ss_pred CCCCEEeccCCcCcccCCh---hhhccCCCCeEeccCCCCCCCCCccc--cCCCCccEEEcccCcccccCCc---ccccC
Q 005045 82 SSLKALSLAWNNLRGSIPN---ELGQLSGLGFFTLYGNFISGIIPSSI--YNISSIYYFSVTQNQLHGQLPT---DVGLT 153 (717)
Q Consensus 82 ~~L~~L~L~~n~l~~~~~~---~~~~l~~L~~L~L~~N~i~~~~~~~~--~~l~~L~~L~L~~N~l~~~l~~---~~~~~ 153 (717)
..++.|.+.++.++...-. .+..+++|++|+|++|.+++..|..+ ..+++|++|+|++|.+++..+. ..+..
T Consensus 64 ~~l~~l~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~ 143 (310)
T 4glp_A 64 LRVRRLTVGAAQVPAQLLVGALRVLAYSRLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQWL 143 (310)
T ss_dssp CCCCEEEECSCCCBHHHHHHHHHHHHHSCCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTTB
T ss_pred cceeEEEEeCCcCCHHHHHHHHHhcccCceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHhhh
Confidence 3467777777776522111 13345678888888888887888777 7888888888888888743331 11224
Q ss_pred CCCcceeecccccccccCCccCCCCCCCCEEeccCcccccc--C--CCCccCCCCCCeeeccccccCCcccCchhhhhhh
Q 005045 154 LPNLKIFAGAVNYFTGSIPVSLSNASNLQVLDFAENGLTGT--I--PGNFGSLKDLVRLNFDQNELGSREIGDLNFLKFL 229 (717)
Q Consensus 154 l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~--~--~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~ 229 (717)
+++|++|++++|.+.+..+..|..+++|++|+|++|++.+. . +..+..+++|++|++++|+++.++.. ....+
T Consensus 144 ~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~---~~~l~ 220 (310)
T 4glp_A 144 KPGLKVLSIAQAHSPAFSCEQVRAFPALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGMETPTGV---CAALA 220 (310)
T ss_dssp CSCCCEEEEECCSSCCCCTTSCCCCTTCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCCCHHHH---HHHHH
T ss_pred ccCCCEEEeeCCCcchhhHHHhccCCCCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCCchHHH---HHHHH
Confidence 55666666666666655556666666666666666665431 1 12234555555555555555433200 00012
Q ss_pred ccCCCCCEEEeecCcccCcCchhhhhccccccEEecCCCccCCCCCccccCC---CCCCEEEccCCcCccccchhhhcCC
Q 005045 230 ANCTSLEVLGLARNSFGGEMPISIANLSTHLRRLTMGENLMHGNIPVGIGNL---VNLNLLGLEGNNLSGSVPEVIGRLN 306 (717)
Q Consensus 230 ~~l~~L~~L~L~~N~l~~~~p~~~~~~~~~L~~L~l~~N~l~~~~~~~~~~l---~~L~~L~L~~N~l~~~~~~~~~~l~ 306 (717)
.+++ +|++|+|++|.+++..|..+..+ ++|++|+|++|+|+ .+|..+. +
T Consensus 221 ~~l~-------------------------~L~~L~Ls~N~l~~~~p~~~~~~~~~~~L~~L~Ls~N~l~-~lp~~~~--~ 272 (310)
T 4glp_A 221 AAGV-------------------------QPHSLDLSHNSLRATVNPSAPRCMWSSALNSLNLSFAGLE-QVPKGLP--A 272 (310)
T ss_dssp HHTC-------------------------CCSSEECTTSCCCCCCCSCCSSCCCCTTCCCEECCSSCCC-SCCSCCC--S
T ss_pred hcCC-------------------------CCCEEECCCCCCCccchhhHHhccCcCcCCEEECCCCCCC-chhhhhc--C
Confidence 3444 45555555555554444444444 57777777777777 4555443 6
Q ss_pred CCCeEEcccCcCCCCCCcccccccccceeeccccccc
Q 005045 307 KLEGLGLNVNKFSGLIPSSLGNLTILTRLWMEENRLE 343 (717)
Q Consensus 307 ~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~ 343 (717)
+|++|+|++|+++++ |. +..+++|+.|+|++|+++
T Consensus 273 ~L~~L~Ls~N~l~~~-~~-~~~l~~L~~L~L~~N~l~ 307 (310)
T 4glp_A 273 KLRVLDLSSNRLNRA-PQ-PDELPEVDNLTLDGNPFL 307 (310)
T ss_dssp CCSCEECCSCCCCSC-CC-TTSCCCCSCEECSSTTTS
T ss_pred CCCEEECCCCcCCCC-ch-hhhCCCccEEECcCCCCC
Confidence 777777777777755 22 566677777777777775
No 340
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.91 E-value=1.4e-23 Score=220.60 Aligned_cols=241 Identities=19% Similarity=0.150 Sum_probs=118.8
Q ss_pred CEEEccCccccccCCccccCCCCCCEEeccCCcCcccCChhhhccCCCCeEeccCCCCCCC-CCccccCCCCccE-EEcc
Q 005045 61 EIIGLGGSNLTGNVPAWIGNFSSLKALSLAWNNLRGSIPNELGQLSGLGFFTLYGNFISGI-IPSSIYNISSIYY-FSVT 138 (717)
Q Consensus 61 ~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~i~~~-~~~~~~~l~~L~~-L~L~ 138 (717)
++++.++++++ .+|..+. +++++|+|++|+|+.+.+++|.++++|++|+|++|++.+. .+.+|.++++|+. +.++
T Consensus 12 ~~v~C~~~~Lt-~iP~~l~--~~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~ 88 (350)
T 4ay9_X 12 RVFLCQESKVT-EIPSDLP--RNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEK 88 (350)
T ss_dssp TEEEEESTTCC-SCCTTCC--TTCSEEEEESCCCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEEE
T ss_pred CEEEecCCCCC-ccCcCcC--CCCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhccc
Confidence 45566666666 4554442 4556666666666544444555555555555555555332 2234455544433 3333
Q ss_pred cCcccccCCcccccCCCCcceeecccccccccCCccCCCCCCCCEEeccCccccccCCCCccCCCCCCeeeccc-cccCC
Q 005045 139 QNQLHGQLPTDVGLTLPNLKIFAGAVNYFTGSIPVSLSNASNLQVLDFAENGLTGTIPGNFGSLKDLVRLNFDQ-NELGS 217 (717)
Q Consensus 139 ~N~l~~~l~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~-N~l~~ 217 (717)
+|++ ..+.|..|..+++|++|++++|+++...+..+....++..|++.+ |++..
T Consensus 89 ~N~l-------------------------~~l~~~~f~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~l~l~~~~~i~~ 143 (350)
T 4ay9_X 89 ANNL-------------------------LYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHT 143 (350)
T ss_dssp ETTC-------------------------CEECTTSBCCCTTCCEEEEEEECCSSCCCCTTCCBSSCEEEEEESCTTCCE
T ss_pred CCcc-------------------------cccCchhhhhccccccccccccccccCCchhhcccchhhhhhhcccccccc
Confidence 4444 444455566666666666666666654444455555555555533 34444
Q ss_pred cccCchhhhhhhccCC-CCCEEEeecCcccCcCchhhhhccccccEEecCCCccCCCCCccccCCCCCCEEEccC-CcCc
Q 005045 218 REIGDLNFLKFLANCT-SLEVLGLARNSFGGEMPISIANLSTHLRRLTMGENLMHGNIPVGIGNLVNLNLLGLEG-NNLS 295 (717)
Q Consensus 218 ~~~~~~~~~~~~~~l~-~L~~L~L~~N~l~~~~p~~~~~~~~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~L~~-N~l~ 295 (717)
++ ...|..+. .++.|+|++|+|+ .+|...+.. .+|+.|++++ |.++
T Consensus 144 l~------~~~f~~~~~~l~~L~L~~N~i~-~i~~~~f~~-------------------------~~L~~l~l~~~n~l~ 191 (350)
T 4ay9_X 144 IE------RNSFVGLSFESVILWLNKNGIQ-EIHNSAFNG-------------------------TQLDELNLSDNNNLE 191 (350)
T ss_dssp EC------TTSSTTSBSSCEEEECCSSCCC-EECTTSSTT-------------------------EEEEEEECTTCTTCC
T ss_pred cc------ccchhhcchhhhhhcccccccc-CCChhhccc-------------------------cchhHHhhccCCccc
Confidence 43 22233322 3444555555555 333333332 3444444442 3444
Q ss_pred cccchhhhcCCCCCeEEcccCcCCCCCCcccccccccceeecccccccccCCcCccCcCCCceEEeeccc
Q 005045 296 GSVPEVIGRLNKLEGLGLNVNKFSGLIPSSLGNLTILTRLWMEENRLEGSIPPSLGNCQKLLVLNLSSND 365 (717)
Q Consensus 296 ~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~l~~N~ 365 (717)
.+.++.|.++++|++|+|++|+|+.+++..|.++++|+.+++ +.++ .+| .+..+++|+.++++++.
T Consensus 192 ~i~~~~f~~l~~L~~LdLs~N~l~~lp~~~~~~L~~L~~l~~--~~l~-~lP-~l~~l~~L~~l~l~~~~ 257 (350)
T 4ay9_X 192 ELPNDVFHGASGPVILDISRTRIHSLPSYGLENLKKLRARST--YNLK-KLP-TLEKLVALMEASLTYPS 257 (350)
T ss_dssp CCCTTTTTTEECCSEEECTTSCCCCCCSSSCTTCCEEECTTC--TTCC-CCC-CTTTCCSCCEEECSCHH
T ss_pred CCCHHHhccCcccchhhcCCCCcCccChhhhccchHhhhccC--CCcC-cCC-CchhCcChhhCcCCCCc
Confidence 333334555555555555555555544444444444443333 2232 444 35566666666665443
No 341
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.91 E-value=2.3e-24 Score=222.63 Aligned_cols=227 Identities=17% Similarity=0.167 Sum_probs=178.8
Q ss_pred CCCCEEECCCCcccccC-Cc--CCCCCCCCCEEEccCccccccCCccc--cCCCCCCEEeccCCcCcccCC----hhhhc
Q 005045 34 TELRSFEASVNDFVGQI-PN--QLSSLTKLEIIGLGGSNLTGNVPAWI--GNFSSLKALSLAWNNLRGSIP----NELGQ 104 (717)
Q Consensus 34 ~~L~~L~L~~n~l~~~~-p~--~~~~l~~L~~L~L~~n~l~~~~p~~~--~~l~~L~~L~L~~n~l~~~~~----~~~~~ 104 (717)
..++.|.+.++.++... .. .+..+++|++|+|++|.+++..|..+ ..+++|++|+|++|.+++..+ ..+..
T Consensus 64 ~~l~~l~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~ 143 (310)
T 4glp_A 64 LRVRRLTVGAAQVPAQLLVGALRVLAYSRLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQWL 143 (310)
T ss_dssp CCCCEEEECSCCCBHHHHHHHHHHHHHSCCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTTB
T ss_pred cceeEEEEeCCcCCHHHHHHHHHhcccCceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHhhh
Confidence 35788888888775211 00 12335679999999999998888887 889999999999999997555 34567
Q ss_pred cCCCCeEeccCCCCCCCCCccccCCCCccEEEcccCccccc--CC-cccccCCCCcceeecccccccccCC--c-cCCCC
Q 005045 105 LSGLGFFTLYGNFISGIIPSSIYNISSIYYFSVTQNQLHGQ--LP-TDVGLTLPNLKIFAGAVNYFTGSIP--V-SLSNA 178 (717)
Q Consensus 105 l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~~--l~-~~~~~~l~~L~~L~l~~n~l~~~~~--~-~~~~l 178 (717)
+++|++|+|++|.+.+..+..|.++++|++|+|++|++.+. ++ ...+..+++|++|++++|.++...+ . .+..+
T Consensus 144 ~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~l~~~l 223 (310)
T 4glp_A 144 KPGLKVLSIAQAHSPAFSCEQVRAFPALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGMETPTGVCAALAAAG 223 (310)
T ss_dssp CSCCCEEEEECCSSCCCCTTSCCCCTTCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCCCHHHHHHHHHHHT
T ss_pred ccCCCEEEeeCCCcchhhHHHhccCCCCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCCchHHHHHHHHhcC
Confidence 89999999999999988889999999999999999998642 22 2334578999999999999973221 1 25678
Q ss_pred CCCCEEeccCccccccCCCCccCC---CCCCeeeccccccCCcccCchhhhhhhccCCCCCEEEeecCcccCcCchhhhh
Q 005045 179 SNLQVLDFAENGLTGTIPGNFGSL---KDLVRLNFDQNELGSREIGDLNFLKFLANCTSLEVLGLARNSFGGEMPISIAN 255 (717)
Q Consensus 179 ~~L~~L~l~~N~l~~~~~~~~~~l---~~L~~L~l~~N~l~~~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~ 255 (717)
++|++|+|++|++++..|..+..+ ++|++|++++|+|+.++ ..+ .++|++|+|++|++++ +|. +..
T Consensus 224 ~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~L~~L~Ls~N~l~~lp-------~~~--~~~L~~L~Ls~N~l~~-~~~-~~~ 292 (310)
T 4glp_A 224 VQPHSLDLSHNSLRATVNPSAPRCMWSSALNSLNLSFAGLEQVP-------KGL--PAKLRVLDLSSNRLNR-APQ-PDE 292 (310)
T ss_dssp CCCSSEECTTSCCCCCCCSCCSSCCCCTTCCCEECCSSCCCSCC-------SCC--CSCCSCEECCSCCCCS-CCC-TTS
T ss_pred CCCCEEECCCCCCCccchhhHHhccCcCcCCEEECCCCCCCchh-------hhh--cCCCCEEECCCCcCCC-Cch-hhh
Confidence 999999999999997778777766 69999999999999775 223 2799999999999994 444 444
Q ss_pred ccccccEEecCCCccCC
Q 005045 256 LSTHLRRLTMGENLMHG 272 (717)
Q Consensus 256 ~~~~L~~L~l~~N~l~~ 272 (717)
+ ++|+.|++++|+++.
T Consensus 293 l-~~L~~L~L~~N~l~~ 308 (310)
T 4glp_A 293 L-PEVDNLTLDGNPFLV 308 (310)
T ss_dssp C-CCCSCEECSSTTTSC
T ss_pred C-CCccEEECcCCCCCC
Confidence 4 589999999999873
No 342
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.90 E-value=2.3e-25 Score=233.26 Aligned_cols=254 Identities=17% Similarity=0.136 Sum_probs=158.2
Q ss_pred ecEEEcCCCcCcCCCCcCCcCC--CCCCEEECCCCcccccCCcCCCCCCCCCEEEccCcccccc-CCccccCCCCCCEEe
Q 005045 12 TQDLNLTYNYLSGKIPTNLSHC--TELRSFEASVNDFVGQIPNQLSSLTKLEIIGLGGSNLTGN-VPAWIGNFSSLKALS 88 (717)
Q Consensus 12 ~~~L~L~~n~l~~~~~~~~~~l--~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~-~p~~~~~l~~L~~L~ 88 (717)
.+.+++++|.+. +..+..+ ++++.|++++|.+.+..+. +..+++|++|+|++|.+++. +|..+..+++|++|+
T Consensus 49 ~~~l~l~~~~~~---~~~~~~~~~~~l~~L~l~~n~l~~~~~~-~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~L~~L~ 124 (336)
T 2ast_B 49 WQTLDLTGKNLH---PDVTGRLLSQGVIAFRCPRSFMDQPLAE-HFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLS 124 (336)
T ss_dssp SSEEECTTCBCC---HHHHHHHHHTTCSEEECTTCEECSCCCS-CCCCBCCCEEECTTCEECHHHHHHHHTTBCCCSEEE
T ss_pred heeeccccccCC---HHHHHhhhhccceEEEcCCccccccchh-hccCCCCCEEEccCCCcCHHHHHHHHhhCCCCCEEe
Confidence 567778777765 4555666 7788888888887755554 55677888888888877754 666777777888888
Q ss_pred ccCCcCcccCChhhhccCCCCeEeccCC-CCCCC-CCccccCCCCccEEEcccC-cccccCCcccccCCC-Ccceeeccc
Q 005045 89 LAWNNLRGSIPNELGQLSGLGFFTLYGN-FISGI-IPSSIYNISSIYYFSVTQN-QLHGQLPTDVGLTLP-NLKIFAGAV 164 (717)
Q Consensus 89 L~~n~l~~~~~~~~~~l~~L~~L~L~~N-~i~~~-~~~~~~~l~~L~~L~L~~N-~l~~~l~~~~~~~l~-~L~~L~l~~ 164 (717)
|++|.+++..+..|..+++|++|+|++| .+++. .+..+.++++|++|+|++| .+++......+..++ +|+.|++++
T Consensus 125 L~~~~l~~~~~~~l~~~~~L~~L~L~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~~L~~L~l~~ 204 (336)
T 2ast_B 125 LEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSG 204 (336)
T ss_dssp CTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHHHHHHSCTTCCEEECCS
T ss_pred CcCcccCHHHHHHHhcCCCCCEEECCCCCCCCHHHHHHHHhcCCCCCEEcCCCCCCcChHHHHHHHHhcccCCCEEEeCC
Confidence 8888777667777777788888888887 56642 4555777777888888877 776321122233566 777777777
Q ss_pred cc--cc-ccCCccCCCCCCCCEEeccCcc-ccccCCCCccCCCCCCeeeccccc-cCCcccCchhhhhhhccCCCCCEEE
Q 005045 165 NY--FT-GSIPVSLSNASNLQVLDFAENG-LTGTIPGNFGSLKDLVRLNFDQNE-LGSREIGDLNFLKFLANCTSLEVLG 239 (717)
Q Consensus 165 n~--l~-~~~~~~~~~l~~L~~L~l~~N~-l~~~~~~~~~~l~~L~~L~l~~N~-l~~~~~~~~~~~~~~~~l~~L~~L~ 239 (717)
|. ++ ..++..+..+++|++|++++|. +++..+..+..+++|+.|++++|. +.... ...+.++++|+.|+
T Consensus 205 ~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~------~~~l~~~~~L~~L~ 278 (336)
T 2ast_B 205 YRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPET------LLELGEIPTLKTLQ 278 (336)
T ss_dssp CGGGSCHHHHHHHHHHCTTCSEEECTTCTTCCGGGGGGGGGCTTCCEEECTTCTTCCGGG------GGGGGGCTTCCEEE
T ss_pred CcccCCHHHHHHHHhhCCCCCEEeCCCCCcCCHHHHHHHhCCCCCCEeeCCCCCCCCHHH------HHHHhcCCCCCEEe
Confidence 73 33 2344455566677777777776 555555566666666666666663 22211 22455566666666
Q ss_pred eecCcccCcCchhhhhccccccEEecCCCccCCCCCcccc
Q 005045 240 LARNSFGGEMPISIANLSTHLRRLTMGENLMHGNIPVGIG 279 (717)
Q Consensus 240 L~~N~l~~~~p~~~~~~~~~L~~L~l~~N~l~~~~~~~~~ 279 (717)
+++| ++.. .+..+...+..|++++|.+++..|..+.
T Consensus 279 l~~~-i~~~---~~~~l~~~l~~L~l~~n~l~~~~~~~~~ 314 (336)
T 2ast_B 279 VFGI-VPDG---TLQLLKEALPHLQINCSHFTTIARPTIG 314 (336)
T ss_dssp CTTS-SCTT---CHHHHHHHSTTSEESCCCSCCTTCSSCS
T ss_pred ccCc-cCHH---HHHHHHhhCcceEEecccCccccCCccc
Confidence 6666 3321 1222212344444555555544444443
No 343
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.90 E-value=1.4e-24 Score=227.45 Aligned_cols=253 Identities=18% Similarity=0.237 Sum_probs=135.0
Q ss_pred CCEEeccCCcCcccCChhhhcc--CCCCeEeccCCCCCCCCCccccCCCCccEEEcccCccccc-CCcccccCCCCccee
Q 005045 84 LKALSLAWNNLRGSIPNELGQL--SGLGFFTLYGNFISGIIPSSIYNISSIYYFSVTQNQLHGQ-LPTDVGLTLPNLKIF 160 (717)
Q Consensus 84 L~~L~L~~n~l~~~~~~~~~~l--~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~~-l~~~~~~~l~~L~~L 160 (717)
++.|++++|.+. +..+..+ ++++.|++++|.+.+..+. +..+++|++|+|++|.+++. ++. .+..+++|++|
T Consensus 49 ~~~l~l~~~~~~---~~~~~~~~~~~l~~L~l~~n~l~~~~~~-~~~~~~L~~L~L~~~~l~~~~~~~-~~~~~~~L~~L 123 (336)
T 2ast_B 49 WQTLDLTGKNLH---PDVTGRLLSQGVIAFRCPRSFMDQPLAE-HFSPFRVQHMDLSNSVIEVSTLHG-ILSQCSKLQNL 123 (336)
T ss_dssp SSEEECTTCBCC---HHHHHHHHHTTCSEEECTTCEECSCCCS-CCCCBCCCEEECTTCEECHHHHHH-HHTTBCCCSEE
T ss_pred heeeccccccCC---HHHHHhhhhccceEEEcCCccccccchh-hccCCCCCEEEccCCCcCHHHHHH-HHhhCCCCCEE
Confidence 667777777665 4556666 6777777777777755444 44567777777777766532 222 22244444444
Q ss_pred ecccccccccCCccCCCCCCCCEEeccCc-ccccc-CCCCccCCCCCCeeeccccccCCcccCchhhhhhhccCCCCCEE
Q 005045 161 AGAVNYFTGSIPVSLSNASNLQVLDFAEN-GLTGT-IPGNFGSLKDLVRLNFDQNELGSREIGDLNFLKFLANCTSLEVL 238 (717)
Q Consensus 161 ~l~~n~l~~~~~~~~~~l~~L~~L~l~~N-~l~~~-~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~l~~L~~L 238 (717)
++++|.++...+..++.+++|++|++++| .+++. ++ ..+.++++|++|
T Consensus 124 ~L~~~~l~~~~~~~l~~~~~L~~L~L~~~~~l~~~~l~------------------------------~~~~~~~~L~~L 173 (336)
T 2ast_B 124 SLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQ------------------------------TLLSSCSRLDEL 173 (336)
T ss_dssp ECTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHH------------------------------HHHHHCTTCCEE
T ss_pred eCcCcccCHHHHHHHhcCCCCCEEECCCCCCCCHHHHH------------------------------HHHhcCCCCCEE
Confidence 44444444444444444555555555555 34321 22 334445555555
Q ss_pred EeecC-cccCc-CchhhhhccccccEEecCCCc--cC-CCCCccccCCCCCCEEEccCCc-CccccchhhhcCCCCCeEE
Q 005045 239 GLARN-SFGGE-MPISIANLSTHLRRLTMGENL--MH-GNIPVGIGNLVNLNLLGLEGNN-LSGSVPEVIGRLNKLEGLG 312 (717)
Q Consensus 239 ~L~~N-~l~~~-~p~~~~~~~~~L~~L~l~~N~--l~-~~~~~~~~~l~~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L~ 312 (717)
++++| .+++. ++..+..++.+|++|++++|. ++ +.++..+.++++|+.|+|++|. +++..+..+..+++|++|+
T Consensus 174 ~l~~~~~l~~~~~~~~~~~l~~~L~~L~l~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~ 253 (336)
T 2ast_B 174 NLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLS 253 (336)
T ss_dssp ECCCCTTCCHHHHHHHHHHSCTTCCEEECCSCGGGSCHHHHHHHHHHCTTCSEEECTTCTTCCGGGGGGGGGCTTCCEEE
T ss_pred cCCCCCCcChHHHHHHHHhcccCCCEEEeCCCcccCCHHHHHHHHhhCCCCCEEeCCCCCcCCHHHHHHHhCCCCCCEee
Confidence 55555 44432 233333331155555555552 22 2234445556666666666666 5545555666666666666
Q ss_pred cccCc-CCCCCCcccccccccceeecccccccccCCcCccCcC-CCceEEeecccCCCCCCcccc
Q 005045 313 LNVNK-FSGLIPSSLGNLTILTRLWMEENRLEGSIPPSLGNCQ-KLLVLNLSSNDLNGTIPKEVR 375 (717)
Q Consensus 313 Ls~N~-l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~-~L~~L~l~~N~l~~~~p~~~~ 375 (717)
+++|. ++......+..+++|+.|+|++| ++ ...+..+. .+..|++++|.+++..|+...
T Consensus 254 l~~~~~~~~~~~~~l~~~~~L~~L~l~~~-i~---~~~~~~l~~~l~~L~l~~n~l~~~~~~~~~ 314 (336)
T 2ast_B 254 LSRCYDIIPETLLELGEIPTLKTLQVFGI-VP---DGTLQLLKEALPHLQINCSHFTTIARPTIG 314 (336)
T ss_dssp CTTCTTCCGGGGGGGGGCTTCCEEECTTS-SC---TTCHHHHHHHSTTSEESCCCSCCTTCSSCS
T ss_pred CCCCCCCCHHHHHHHhcCCCCCEEeccCc-cC---HHHHHHHHhhCcceEEecccCccccCCccc
Confidence 66664 22111124556666777777666 22 22333332 355666777777766666554
No 344
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.90 E-value=1.4e-23 Score=216.36 Aligned_cols=208 Identities=18% Similarity=0.296 Sum_probs=124.4
Q ss_pred EEEcCCCcCcCCCCcCCcCCCCCCEEECCCCcccccCCcCCCCCCCCCEEEccCccccccCCccccCCCCCCEEeccCCc
Q 005045 14 DLNLTYNYLSGKIPTNLSHCTELRSFEASVNDFVGQIPNQLSSLTKLEIIGLGGSNLTGNVPAWIGNFSSLKALSLAWNN 93 (717)
Q Consensus 14 ~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~ 93 (717)
.+.+..+.+...++ +..+++|++|++++|.++ .+| .+..+++|++|+|++|.+++ ++. +..+++|++|+|++|+
T Consensus 23 ~~~l~~~~~~~~~~--~~~l~~L~~L~l~~~~i~-~l~-~~~~l~~L~~L~L~~n~i~~-~~~-~~~l~~L~~L~L~~n~ 96 (308)
T 1h6u_A 23 KIAAGKSNVTDTVT--QADLDGITTLSAFGTGVT-TIE-GVQYLNNLIGLELKDNQITD-LAP-LKNLTKITELELSGNP 96 (308)
T ss_dssp HHHTTCSSTTSEEC--HHHHHTCCEEECTTSCCC-CCT-TGGGCTTCCEEECCSSCCCC-CGG-GTTCCSCCEEECCSCC
T ss_pred HHHhCCCCcCceec--HHHcCCcCEEEeeCCCcc-Cch-hhhccCCCCEEEccCCcCCC-Chh-HccCCCCCEEEccCCc
Confidence 33455555553332 456677777777777776 344 46777777777777777773 333 7777777777777777
Q ss_pred CcccCChhhhccCCCCeEeccCCCCCCCCCccccCCCCccEEEcccCcccccCCcccccCCCCcceeecccccccccCCc
Q 005045 94 LRGSIPNELGQLSGLGFFTLYGNFISGIIPSSIYNISSIYYFSVTQNQLHGQLPTDVGLTLPNLKIFAGAVNYFTGSIPV 173 (717)
Q Consensus 94 l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~~l~~~~~~~l~~L~~L~l~~n~l~~~~~~ 173 (717)
+++ ++ .+..+++|++|+|++|.++++ + .+..+++|++|+|++|.++ .++. +..+++|+.|++++|.++...+
T Consensus 97 l~~-~~-~~~~l~~L~~L~l~~n~l~~~-~-~l~~l~~L~~L~l~~n~l~-~~~~--l~~l~~L~~L~l~~n~l~~~~~- 168 (308)
T 1h6u_A 97 LKN-VS-AIAGLQSIKTLDLTSTQITDV-T-PLAGLSNLQVLYLDLNQIT-NISP--LAGLTNLQYLSIGNAQVSDLTP- 168 (308)
T ss_dssp CSC-CG-GGTTCTTCCEEECTTSCCCCC-G-GGTTCTTCCEEECCSSCCC-CCGG--GGGCTTCCEEECCSSCCCCCGG-
T ss_pred CCC-ch-hhcCCCCCCEEECCCCCCCCc-h-hhcCCCCCCEEECCCCccC-cCcc--ccCCCCccEEEccCCcCCCChh-
Confidence 773 33 577777777777777777753 2 3777777777777777776 3333 3355555555555555554322
Q ss_pred cCCCCCCCCEEeccCccccccCCCCccCCCCCCeeeccccccCCcccCchhhhhhhccCCCCCEEEeecCccc
Q 005045 174 SLSNASNLQVLDFAENGLTGTIPGNFGSLKDLVRLNFDQNELGSREIGDLNFLKFLANCTSLEVLGLARNSFG 246 (717)
Q Consensus 174 ~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~l~~L~~L~L~~N~l~ 246 (717)
+..+++|+.|++++|.+++..+ +..+++|+.|++++|+++.+. .+..+++|+.|++++|.++
T Consensus 169 -l~~l~~L~~L~l~~n~l~~~~~--l~~l~~L~~L~L~~N~l~~~~--------~l~~l~~L~~L~l~~N~i~ 230 (308)
T 1h6u_A 169 -LANLSKLTTLKADDNKISDISP--LASLPNLIEVHLKNNQISDVS--------PLANTSNLFIVTLTNQTIT 230 (308)
T ss_dssp -GTTCTTCCEEECCSSCCCCCGG--GGGCTTCCEEECTTSCCCBCG--------GGTTCTTCCEEEEEEEEEE
T ss_pred -hcCCCCCCEEECCCCccCcChh--hcCCCCCCEEEccCCccCccc--------cccCCCCCCEEEccCCeee
Confidence 5555555555555555553222 455555555555555555432 1444555555555555554
No 345
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.90 E-value=2.2e-23 Score=219.04 Aligned_cols=241 Identities=16% Similarity=0.170 Sum_probs=125.3
Q ss_pred cEEEcCCCcCcCCCCcCCcCCCCCCEEECCCCcccccCCcCCCCCCCCCEEEccCccccccCC-ccccCCCCCCE-Eecc
Q 005045 13 QDLNLTYNYLSGKIPTNLSHCTELRSFEASVNDFVGQIPNQLSSLTKLEIIGLGGSNLTGNVP-AWIGNFSSLKA-LSLA 90 (717)
Q Consensus 13 ~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p-~~~~~l~~L~~-L~L~ 90 (717)
++++.++++++ .+|..+ .+++++|+|++|+|+.+.+.+|.++++|++|+|++|++.+.+| ..|.++++|+. +.++
T Consensus 12 ~~v~C~~~~Lt-~iP~~l--~~~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~ 88 (350)
T 4ay9_X 12 RVFLCQESKVT-EIPSDL--PRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEK 88 (350)
T ss_dssp TEEEEESTTCC-SCCTTC--CTTCSEEEEESCCCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEEE
T ss_pred CEEEecCCCCC-ccCcCc--CCCCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhccc
Confidence 45555666665 455444 2456666666666654333455666666666666665543333 34555555443 4444
Q ss_pred CCcCcccCChhhhccCCCCeEeccCCCCCCCCCccccCCCCccEEEccc-CcccccCCcccccCCCCcceeecccccccc
Q 005045 91 WNNLRGSIPNELGQLSGLGFFTLYGNFISGIIPSSIYNISSIYYFSVTQ-NQLHGQLPTDVGLTLPNLKIFAGAVNYFTG 169 (717)
Q Consensus 91 ~n~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~-N~l~~~l~~~~~~~l~~L~~L~l~~n~l~~ 169 (717)
.|+|+.+.|++|.++++|++|++++|+|+...+..+....++..|++.+ |++. .++.
T Consensus 89 ~N~l~~l~~~~f~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~l~l~~~~~i~-~l~~--------------------- 146 (350)
T 4ay9_X 89 ANNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIH-TIER--------------------- 146 (350)
T ss_dssp ETTCCEECTTSBCCCTTCCEEEEEEECCSSCCCCTTCCBSSCEEEEEESCTTCC-EECT---------------------
T ss_pred CCcccccCchhhhhccccccccccccccccCCchhhcccchhhhhhhccccccc-cccc---------------------
Confidence 5555555555555555555555555555554444555555555555543 3343 3333
Q ss_pred cCCccCCCCC-CCCEEeccCccccccCCCCccCCCCCCeeecc-ccccCCcccCchhhhhhhccCCCCCEEEeecCcccC
Q 005045 170 SIPVSLSNAS-NLQVLDFAENGLTGTIPGNFGSLKDLVRLNFD-QNELGSREIGDLNFLKFLANCTSLEVLGLARNSFGG 247 (717)
Q Consensus 170 ~~~~~~~~l~-~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~-~N~l~~~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~ 247 (717)
..|..+. .++.|+|++|+|+. ++......++|++|+++ +|.++.++ ...|.++++|++|+|++|+|+
T Consensus 147 ---~~f~~~~~~l~~L~L~~N~i~~-i~~~~f~~~~L~~l~l~~~n~l~~i~------~~~f~~l~~L~~LdLs~N~l~- 215 (350)
T 4ay9_X 147 ---NSFVGLSFESVILWLNKNGIQE-IHNSAFNGTQLDELNLSDNNNLEELP------NDVFHGASGPVILDISRTRIH- 215 (350)
T ss_dssp ---TSSTTSBSSCEEEECCSSCCCE-ECTTSSTTEEEEEEECTTCTTCCCCC------TTTTTTEECCSEEECTTSCCC-
T ss_pred ---cchhhcchhhhhhccccccccC-CChhhccccchhHHhhccCCcccCCC------HHHhccCcccchhhcCCCCcC-
Confidence 3344432 45556666666663 33333334456666654 35555554 344556666666666666666
Q ss_pred cCchhhhhccccccEEecCCCccCCCCCccccCCCCCCEEEccCCc
Q 005045 248 EMPISIANLSTHLRRLTMGENLMHGNIPVGIGNLVNLNLLGLEGNN 293 (717)
Q Consensus 248 ~~p~~~~~~~~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~L~~N~ 293 (717)
.+|...+ .+|+.|.+.++.--..+| .+.++++|+.++++++.
T Consensus 216 ~lp~~~~---~~L~~L~~l~~~~l~~lP-~l~~l~~L~~l~l~~~~ 257 (350)
T 4ay9_X 216 SLPSYGL---ENLKKLRARSTYNLKKLP-TLEKLVALMEASLTYPS 257 (350)
T ss_dssp CCCSSSC---TTCCEEECTTCTTCCCCC-CTTTCCSCCEEECSCHH
T ss_pred ccChhhh---ccchHhhhccCCCcCcCC-CchhCcChhhCcCCCCc
Confidence 4443221 245555544433222344 36667777777776543
No 346
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.90 E-value=3.4e-23 Score=213.33 Aligned_cols=193 Identities=21% Similarity=0.304 Sum_probs=171.2
Q ss_pred ceecEEEcCCCcCcCCCCcCCcCCCCCCEEECCCCcccccCCcCCCCCCCCCEEEccCccccccCCccccCCCCCCEEec
Q 005045 10 LMTQDLNLTYNYLSGKIPTNLSHCTELRSFEASVNDFVGQIPNQLSSLTKLEIIGLGGSNLTGNVPAWIGNFSSLKALSL 89 (717)
Q Consensus 10 ~~~~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L 89 (717)
.++++|++++|+++. +| .+..+++|++|+|++|.+++ ++. +.++++|++|+|++|.+++ ++ .+..+++|++|+|
T Consensus 41 ~~L~~L~l~~~~i~~-l~-~~~~l~~L~~L~L~~n~i~~-~~~-~~~l~~L~~L~L~~n~l~~-~~-~~~~l~~L~~L~l 114 (308)
T 1h6u_A 41 DGITTLSAFGTGVTT-IE-GVQYLNNLIGLELKDNQITD-LAP-LKNLTKITELELSGNPLKN-VS-AIAGLQSIKTLDL 114 (308)
T ss_dssp HTCCEEECTTSCCCC-CT-TGGGCTTCCEEECCSSCCCC-CGG-GTTCCSCCEEECCSCCCSC-CG-GGTTCTTCCEEEC
T ss_pred CCcCEEEeeCCCccC-ch-hhhccCCCCEEEccCCcCCC-Chh-HccCCCCCEEEccCCcCCC-ch-hhcCCCCCCEEEC
Confidence 378999999999984 55 69999999999999999995 444 9999999999999999994 54 6999999999999
Q ss_pred cCCcCcccCChhhhccCCCCeEeccCCCCCCCCCccccCCCCccEEEcccCcccccCCcccccCCCCcceeecccccccc
Q 005045 90 AWNNLRGSIPNELGQLSGLGFFTLYGNFISGIIPSSIYNISSIYYFSVTQNQLHGQLPTDVGLTLPNLKIFAGAVNYFTG 169 (717)
Q Consensus 90 ~~n~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~~l~~~~~~~l~~L~~L~l~~n~l~~ 169 (717)
++|++++ ++ .+..+++|++|+|++|.+++..+ +..+++|++|+|++|.++ .++. +..+++|+.|++++|.+++
T Consensus 115 ~~n~l~~-~~-~l~~l~~L~~L~l~~n~l~~~~~--l~~l~~L~~L~l~~n~l~-~~~~--l~~l~~L~~L~l~~n~l~~ 187 (308)
T 1h6u_A 115 TSTQITD-VT-PLAGLSNLQVLYLDLNQITNISP--LAGLTNLQYLSIGNAQVS-DLTP--LANLSKLTTLKADDNKISD 187 (308)
T ss_dssp TTSCCCC-CG-GGTTCTTCCEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCC-CCGG--GTTCTTCCEEECCSSCCCC
T ss_pred CCCCCCC-ch-hhcCCCCCCEEECCCCccCcCcc--ccCCCCccEEEccCCcCC-CChh--hcCCCCCCEEECCCCccCc
Confidence 9999995 44 39999999999999999996544 999999999999999998 5665 6689999999999999996
Q ss_pred cCCccCCCCCCCCEEeccCccccccCCCCccCCCCCCeeeccccccCCcc
Q 005045 170 SIPVSLSNASNLQVLDFAENGLTGTIPGNFGSLKDLVRLNFDQNELGSRE 219 (717)
Q Consensus 170 ~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~ 219 (717)
..+ +..+++|++|++++|++++..+ +..+++|+.|++++|.++..+
T Consensus 188 ~~~--l~~l~~L~~L~L~~N~l~~~~~--l~~l~~L~~L~l~~N~i~~~~ 233 (308)
T 1h6u_A 188 ISP--LASLPNLIEVHLKNNQISDVSP--LANTSNLFIVTLTNQTITNQP 233 (308)
T ss_dssp CGG--GGGCTTCCEEECTTSCCCBCGG--GTTCTTCCEEEEEEEEEECCC
T ss_pred Chh--hcCCCCCCEEEccCCccCcccc--ccCCCCCCEEEccCCeeecCC
Confidence 554 8899999999999999996553 899999999999999998765
No 347
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.89 E-value=1.3e-25 Score=254.45 Aligned_cols=347 Identities=14% Similarity=0.106 Sum_probs=244.8
Q ss_pred ceecEEEcCCC-cCcCC-CCcCCcCCCCCCEEECCCCcccccCCcC----CCCCCCCCEEEccCcc--ccc-cCCccccC
Q 005045 10 LMTQDLNLTYN-YLSGK-IPTNLSHCTELRSFEASVNDFVGQIPNQ----LSSLTKLEIIGLGGSN--LTG-NVPAWIGN 80 (717)
Q Consensus 10 ~~~~~L~L~~n-~l~~~-~~~~~~~l~~L~~L~L~~n~l~~~~p~~----~~~l~~L~~L~L~~n~--l~~-~~p~~~~~ 80 (717)
.++++|+|++| .++.. ++..+.++++|++|+|++|.+++..+.. ...+++|++|++++|. ++. .++..+..
T Consensus 130 ~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~l~~l~~~ 209 (594)
T 2p1m_B 130 KNFKVLVLSSCEGFSTDGLAAIAATCRNLKELDLRESDVDDVSGHWLSHFPDTYTSLVSLNISCLASEVSFSALERLVTR 209 (594)
T ss_dssp TTCCEEEEESCEEEEHHHHHHHHHHCTTCCEEECTTCEEECCCGGGGGGSCTTCCCCCEEECTTCCSCCCHHHHHHHHHH
T ss_pred CCCcEEeCCCcCCCCHHHHHHHHHhCCCCCEEeCcCCccCCcchHHHHHHhhcCCcCcEEEecccCCcCCHHHHHHHHHh
Confidence 37899999999 55532 4454558899999999999987544333 3467799999999987 321 12222345
Q ss_pred CCCCCEEeccCC-cCcccCChhhhccCCCCeEeccCCC--------------------------CCCC----CCccccCC
Q 005045 81 FSSLKALSLAWN-NLRGSIPNELGQLSGLGFFTLYGNF--------------------------ISGI----IPSSIYNI 129 (717)
Q Consensus 81 l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~L~~N~--------------------------i~~~----~~~~~~~l 129 (717)
+++|++|+|++| .++ .++..+..+++|+.|+++.+. +... ++..+..+
T Consensus 210 ~~~L~~L~L~~~~~~~-~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~~l~~~~~L~~Ls~~~~~~~~~l~~~~~~~ 288 (594)
T 2p1m_B 210 CPNLKSLKLNRAVPLE-KLATLLQRAPQLEELGTGGYTAEVRPDVYSGLSVALSGCKELRCLSGFWDAVPAYLPAVYSVC 288 (594)
T ss_dssp CTTCCEEECCTTSCHH-HHHHHHHHCTTCSEEECSBCCCCCCHHHHHHHHHHHHTCTTCCEEECCBTCCGGGGGGGHHHH
T ss_pred CCCCcEEecCCCCcHH-HHHHHHhcCCcceEcccccccCccchhhHHHHHHHHhcCCCcccccCCcccchhhHHHHHHhh
Confidence 789999999998 455 477778888888888866552 2111 23333467
Q ss_pred CCccEEEcccCcccccCCcccccCCCCcceeecccccccccCCc-cCCCCCCCCEEecc---------CccccccCCCCc
Q 005045 130 SSIYYFSVTQNQLHGQLPTDVGLTLPNLKIFAGAVNYFTGSIPV-SLSNASNLQVLDFA---------ENGLTGTIPGNF 199 (717)
Q Consensus 130 ~~L~~L~L~~N~l~~~l~~~~~~~l~~L~~L~l~~n~l~~~~~~-~~~~l~~L~~L~l~---------~N~l~~~~~~~~ 199 (717)
++|++|+|++|.+++.....+...+++|+.|++++| +...... ....+++|++|+++ .+.+++.....+
T Consensus 289 ~~L~~L~L~~~~l~~~~l~~~~~~~~~L~~L~l~~~-~~~~~l~~l~~~~~~L~~L~L~~~~~~g~~~~~~l~~~~l~~l 367 (594)
T 2p1m_B 289 SRLTTLNLSYATVQSYDLVKLLCQCPKLQRLWVLDY-IEDAGLEVLASTCKDLRELRVFPSEPFVMEPNVALTEQGLVSV 367 (594)
T ss_dssp TTCCEEECTTCCCCHHHHHHHHTTCTTCCEEEEEGG-GHHHHHHHHHHHCTTCCEEEEECSCTTCSSCSSCCCHHHHHHH
T ss_pred CCCCEEEccCCCCCHHHHHHHHhcCCCcCEEeCcCc-cCHHHHHHHHHhCCCCCEEEEecCcccccccCCCCCHHHHHHH
Confidence 899999999999875444445568899999999998 4422222 23358999999994 355654333333
Q ss_pred c-CCCCCCeeeccccccCCcccCchhhhhhh-ccCCCCCEEEee--c----CcccCc-----CchhhhhccccccEEecC
Q 005045 200 G-SLKDLVRLNFDQNELGSREIGDLNFLKFL-ANCTSLEVLGLA--R----NSFGGE-----MPISIANLSTHLRRLTMG 266 (717)
Q Consensus 200 ~-~l~~L~~L~l~~N~l~~~~~~~~~~~~~~-~~l~~L~~L~L~--~----N~l~~~-----~p~~~~~~~~~L~~L~l~ 266 (717)
. .+++|+.|.++.|.++... ...+ ..+++|+.|+++ + |.+++. ++..+... ++|+.|+++
T Consensus 368 ~~~~~~L~~L~~~~~~l~~~~------~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~~~l~~~~-~~L~~L~L~ 440 (594)
T 2p1m_B 368 SMGCPKLESVLYFCRQMTNAA------LITIARNRPNMTRFRLCIIEPKAPDYLTLEPLDIGFGAIVEHC-KDLRRLSLS 440 (594)
T ss_dssp HHHCTTCCEEEEEESCCCHHH------HHHHHHHCTTCCEEEEEESSTTCCCTTTCCCTHHHHHHHHHHC-TTCCEEECC
T ss_pred HHhchhHHHHHHhcCCcCHHH------HHHHHhhCCCcceeEeecccCCCcccccCCchhhHHHHHHhhC-CCccEEeec
Confidence 3 4899999999999988654 3344 368999999999 4 566621 11123344 589999998
Q ss_pred CCccCCCCCccccC-CCCCCEEEccCCcCccccchhh-hcCCCCCeEEcccCcCCCCCCc-ccccccccceeeccccccc
Q 005045 267 ENLMHGNIPVGIGN-LVNLNLLGLEGNNLSGSVPEVI-GRLNKLEGLGLNVNKFSGLIPS-SLGNLTILTRLWMEENRLE 343 (717)
Q Consensus 267 ~N~l~~~~~~~~~~-l~~L~~L~L~~N~l~~~~~~~~-~~l~~L~~L~Ls~N~l~~~~~~-~~~~l~~L~~L~L~~N~l~ 343 (717)
+ .+++..+..+.. +++|+.|+|++|.+++..+..+ .++++|++|+|++|++++.... ....+++|+.|+|++|+++
T Consensus 441 ~-~l~~~~~~~l~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~l~~~~~~ 519 (594)
T 2p1m_B 441 G-LLTDKVFEYIGTYAKKMEMLSVAFAGDSDLGMHHVLSGCDSLRKLEIRDCPFGDKALLANASKLETMRSLWMSSCSVS 519 (594)
T ss_dssp S-SCCHHHHHHHHHHCTTCCEEEEESCCSSHHHHHHHHHHCTTCCEEEEESCSCCHHHHHHTGGGGGGSSEEEEESSCCB
T ss_pred C-cccHHHHHHHHHhchhccEeeccCCCCcHHHHHHHHhcCCCcCEEECcCCCCcHHHHHHHHHhCCCCCEEeeeCCCCC
Confidence 8 666555555554 8999999999999986666555 6799999999999999654443 3456899999999999996
Q ss_pred ccCCcCc-cCcCCCceEEeecccC
Q 005045 344 GSIPPSL-GNCQKLLVLNLSSNDL 366 (717)
Q Consensus 344 ~~~p~~~-~~l~~L~~L~l~~N~l 366 (717)
......+ ..+++|+...+..+.-
T Consensus 520 ~~~~~~l~~~lp~l~i~~~~~~~~ 543 (594)
T 2p1m_B 520 FGACKLLGQKMPKLNVEVIDERGA 543 (594)
T ss_dssp HHHHHHHHHHCTTEEEEEECSSSC
T ss_pred HHHHHHHHHhCCCCEEEEecCCCc
Confidence 4433334 4567777766666544
No 348
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.87 E-value=7.6e-22 Score=191.10 Aligned_cols=183 Identities=19% Similarity=0.200 Sum_probs=153.7
Q ss_pred eecEEEcCCCcCcCCCCcCCcCCCCCCEEECCCCcccccCCcCCCCCCCCCEEEccCccccccCCccccCCCCCCEEecc
Q 005045 11 MTQDLNLTYNYLSGKIPTNLSHCTELRSFEASVNDFVGQIPNQLSSLTKLEIIGLGGSNLTGNVPAWIGNFSSLKALSLA 90 (717)
Q Consensus 11 ~~~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~ 90 (717)
.-+.+++++++++ .+|..+ .++|++|++++|.+++..+..|.++++|++|+|++|++++..+..|..+++|++|+|+
T Consensus 8 ~~~~v~c~~~~l~-~~p~~~--~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls 84 (208)
T 2o6s_A 8 SGTTVECYSQGRT-SVPTGI--PAQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLS 84 (208)
T ss_dssp ETTEEECCSSCCS-SCCSCC--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECC
T ss_pred CCCEEEecCCCcc-CCCCCC--CCCCcEEEcCCCccCcCChhhhcccccCcEEECCCCccCccChhhcCCCCCcCEEECC
Confidence 3467889999998 566554 4689999999999997667778899999999999999996666678889999999999
Q ss_pred CCcCcccCChhhhccCCCCeEeccCCCCCCCCCccccCCCCccEEEcccCcccccCCcccccCCCCcceeeccccccccc
Q 005045 91 WNNLRGSIPNELGQLSGLGFFTLYGNFISGIIPSSIYNISSIYYFSVTQNQLHGQLPTDVGLTLPNLKIFAGAVNYFTGS 170 (717)
Q Consensus 91 ~n~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~~l~~~~~~~l~~L~~L~l~~n~l~~~ 170 (717)
+|++++..+..|..+++|++|+|++|+|+++.+..|..+++|++|+|++|.++ .++...+..+++|+.|++++|.+.
T Consensus 85 ~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~-~~~~~~~~~l~~L~~L~l~~N~~~-- 161 (208)
T 2o6s_A 85 TNQLQSLPNGVFDKLTQLKELALNTNQLQSLPDGVFDKLTQLKDLRLYQNQLK-SVPDGVFDRLTSLQYIWLHDNPWD-- 161 (208)
T ss_dssp SSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCS-CCCTTTTTTCTTCCEEECCSCCBC--
T ss_pred CCcCCccCHhHhcCccCCCEEEcCCCcCcccCHhHhccCCcCCEEECCCCccc-eeCHHHhccCCCccEEEecCCCee--
Confidence 99999777777899999999999999999888888899999999999999998 777777778889999999988765
Q ss_pred CCccCCCCCCCCEEeccCccccccCCCCccCCCC
Q 005045 171 IPVSLSNASNLQVLDFAENGLTGTIPGNFGSLKD 204 (717)
Q Consensus 171 ~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~ 204 (717)
+.+++|++|+++.|.+++.+|..++.++.
T Consensus 162 -----~~~~~l~~L~~~~n~~~g~ip~~~~~l~~ 190 (208)
T 2o6s_A 162 -----CTCPGIRYLSEWINKHSGVVRNSAGSVAP 190 (208)
T ss_dssp -----CCTTTTHHHHHHHHHCTTTBBCTTSSBCT
T ss_pred -----cCCCCHHHHHHHHHhCCceeeccCccccC
Confidence 34567888888888888888887776654
No 349
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.87 E-value=7.7e-22 Score=191.08 Aligned_cols=170 Identities=19% Similarity=0.234 Sum_probs=153.7
Q ss_pred ceeeCCcc--eecEEEcCCCcCcCCCCcCCcCCCCCCEEECCCCcccccCCcCCCCCCCCCEEEccCccccccCCccccC
Q 005045 3 LIMIPEHL--MTQDLNLTYNYLSGKIPTNLSHCTELRSFEASVNDFVGQIPNQLSSLTKLEIIGLGGSNLTGNVPAWIGN 80 (717)
Q Consensus 3 l~~~p~~~--~~~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~ 80 (717)
++.+|... ++++|+|++|++++..+..|..+++|++|++++|.+++..+..|.++++|++|+|++|.+++..+..|..
T Consensus 19 l~~~p~~~~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~ 98 (208)
T 2o6s_A 19 RTSVPTGIPAQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQLQSLPNGVFDK 98 (208)
T ss_dssp CSSCCSCCCTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTT
T ss_pred ccCCCCCCCCCCcEEEcCCCccCcCChhhhcccccCcEEECCCCccCccChhhcCCCCCcCEEECCCCcCCccCHhHhcC
Confidence 45566655 7899999999999877888999999999999999999776777899999999999999999777777899
Q ss_pred CCCCCEEeccCCcCcccCChhhhccCCCCeEeccCCCCCCCCCccccCCCCccEEEcccCcccccCCcccccCCCCccee
Q 005045 81 FSSLKALSLAWNNLRGSIPNELGQLSGLGFFTLYGNFISGIIPSSIYNISSIYYFSVTQNQLHGQLPTDVGLTLPNLKIF 160 (717)
Q Consensus 81 l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~~l~~~~~~~l~~L~~L 160 (717)
+++|++|+|++|+|++..+..|..+++|++|+|++|.++++.+..|..+++|++|+|++|.+.+ .+++|+.|
T Consensus 99 l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~--------~~~~l~~L 170 (208)
T 2o6s_A 99 LTQLKELALNTNQLQSLPDGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWDC--------TCPGIRYL 170 (208)
T ss_dssp CTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCCBCC--------CTTTTHHH
T ss_pred ccCCCEEEcCCCcCcccCHhHhccCCcCCEEECCCCccceeCHHHhccCCCccEEEecCCCeec--------CCCCHHHH
Confidence 9999999999999997777789999999999999999998888889999999999999999873 56789999
Q ss_pred ecccccccccCCccCCCCCC
Q 005045 161 AGAVNYFTGSIPVSLSNASN 180 (717)
Q Consensus 161 ~l~~n~l~~~~~~~~~~l~~ 180 (717)
+++.|.+++.+|..++.++.
T Consensus 171 ~~~~n~~~g~ip~~~~~l~~ 190 (208)
T 2o6s_A 171 SEWINKHSGVVRNSAGSVAP 190 (208)
T ss_dssp HHHHHHCTTTBBCTTSSBCT
T ss_pred HHHHHhCCceeeccCccccC
Confidence 99999999999999987765
No 350
>3en9_A Glycoprotease, O-sialoglycoprotein endopeptidase/protein kinase; endopeptidase activity, protein kinase activity; HET: TBR; 2.67A {Methanocaldococcus jannaschii} PDB: 3enh_A* 2vwb_A*
Probab=99.87 E-value=7.1e-24 Score=234.42 Aligned_cols=188 Identities=18% Similarity=0.152 Sum_probs=137.5
Q ss_pred ccccccCcccccceEEEEeCCCchhhhHHhHhh--------hhhHHHHHHHHHHHHhcCCCCcee--EEEEeeccccCCC
Q 005045 392 SKENLIGTGSFGSVYKGTLGDGTIVAIKVLKLQ--------QQGALKSFIDECNALKSTRHRNIL--RVITACSSVDLEG 461 (717)
Q Consensus 392 ~~~~~ig~g~~g~v~~~~~~~~~~vavK~~~~~--------~~~~~~~~~~e~~~l~~l~h~ni~--~~~~~~~~~~~~~ 461 (717)
...+.||+|+||.||+|.. .++.+++|..... .....+++.+|++++++++||||+ ..++..
T Consensus 339 ~~~~~LG~G~fg~Vy~~~~-~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~E~~il~~l~h~nIv~~~~~~~~------- 410 (540)
T 3en9_A 339 IPEHLIGKGAEADIKRDSY-LDFDVIIKERVKKGYRDERLDENIRKSRTAREARYLALVKDFGIPAPYIFDVD------- 410 (540)
T ss_dssp ---------CCEEEEEEEC-SSCEEEEEEECCCTTSCHHHHHHHHHHHHHHHHHHHHHGGGGTCCCCCEEEEE-------
T ss_pred CCCCEEeeCCCEEEEEEEE-CCCeEEEEEEecccccchhhhhHHHHHHHHHHHHHHHhcCCCCcCceEEEEEe-------
Confidence 4467899999999999964 4666777764321 122356789999999999999999 555441
Q ss_pred CceEEEEEecCCCCChhhhccCCCCCcccccccCHHHHHHHHHHHHHHHHHHHhcCCCCeeecCCCCCCEEeCCCCceEE
Q 005045 462 NDFKALVFEFMSNGNLDQWLHPSPAEHYQFKKLSVIQRLNIAIDVASALDYLHHHCDTPIAHCDLKPSNVLLDKDMTAHV 541 (717)
Q Consensus 462 ~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~dlkp~NIll~~~~~~kl 541 (717)
.+..|+||||+++++|.+++.. +..++.|++.||+|||++ +|+||||||+||+++. .+||
T Consensus 411 ~~~~~lVmE~~~ggsL~~~l~~---------------~~~i~~qi~~aL~~LH~~---gIiHrDiKp~NILl~~--~~kL 470 (540)
T 3en9_A 411 LDNKRIMMSYINGKLAKDVIED---------------NLDIAYKIGEIVGKLHKN---DVIHNDLTTSNFIFDK--DLYI 470 (540)
T ss_dssp TTTTEEEEECCCSEEHHHHSTT---------------CTHHHHHHHHHHHHHHHT---TEECTTCCTTSEEESS--SEEE
T ss_pred CCccEEEEECCCCCCHHHHHHH---------------HHHHHHHHHHHHHHHHHC---cCccCCCCHHHEEECC--eEEE
Confidence 2355999999999999999863 457999999999999998 9999999999999998 9999
Q ss_pred eeeccchhcccccCCCCCCcceeecccccccccCCCccCC---CCCcccchhhHHHHHHHHHhCCCCCC
Q 005045 542 GDFGLAKFLFEISDNPSKNQTVSIGLKGSIGYIPPEHMNG---QVSILGDIYSYGILLLEMFTGKRPTG 607 (717)
Q Consensus 542 ~Dfg~~~~~~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~---~~~~~sDvwslG~vl~elltg~~p~~ 607 (717)
+|||+++....................||+.|+|||++.+ .|+..+|+||..+-..+-+.++.+|.
T Consensus 471 ~DFGla~~~~~~~~~~~~~~~~~~~~~GT~~y~APEv~~~~~~~Y~~~~d~ws~vl~~l~~v~~r~rY~ 539 (540)
T 3en9_A 471 IDFGLGKISNLDEDKAVDLIVFKKAVLSTHHEKFDEIWERFLEGYKSVYDRWEIILELMKDVERRARYV 539 (540)
T ss_dssp CCCTTCEECCCHHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHCTTHHHHHHHHHHHHTCSCCC
T ss_pred EECccCEECCCccccccchhhhhhhhcCCCCcCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhccccC
Confidence 9999998752110000000001235679999999999765 36788899999988888888877764
No 351
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.86 E-value=4.1e-21 Score=212.08 Aligned_cols=195 Identities=22% Similarity=0.288 Sum_probs=92.4
Q ss_pred CCCEEEccCccccccCCccccCCCCCCEEeccCCcCcccCChhhhccCCCCeEeccCCCCCCCCCccccCCCCccEEEcc
Q 005045 59 KLEIIGLGGSNLTGNVPAWIGNFSSLKALSLAWNNLRGSIPNELGQLSGLGFFTLYGNFISGIIPSSIYNISSIYYFSVT 138 (717)
Q Consensus 59 ~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~ 138 (717)
+|+.|+|++|.|++ +|..+. ++|++|+|++|+|+ .+| ..+++|++|+|++|+|++ +|. |.+ +|++|+|+
T Consensus 60 ~L~~L~Ls~n~L~~-lp~~l~--~~L~~L~Ls~N~l~-~ip---~~l~~L~~L~Ls~N~l~~-ip~-l~~--~L~~L~Ls 128 (571)
T 3cvr_A 60 QFSELQLNRLNLSS-LPDNLP--PQITVLEITQNALI-SLP---ELPASLEYLDACDNRLST-LPE-LPA--SLKHLDVD 128 (571)
T ss_dssp TCSEEECCSSCCSC-CCSCCC--TTCSEEECCSSCCS-CCC---CCCTTCCEEECCSSCCSC-CCC-CCT--TCCEEECC
T ss_pred CccEEEeCCCCCCc-cCHhHc--CCCCEEECcCCCCc-ccc---cccCCCCEEEccCCCCCC-cch-hhc--CCCEEECC
Confidence 44444444444442 333221 34444444444444 333 223444444444444443 222 333 44445555
Q ss_pred cCcccccCCcccccCCCCcceeecccccccccCCccCCCCCCCCEEeccCccccccCCCCccCCCCCCeeeccccccCCc
Q 005045 139 QNQLHGQLPTDVGLTLPNLKIFAGAVNYFTGSIPVSLSNASNLQVLDFAENGLTGTIPGNFGSLKDLVRLNFDQNELGSR 218 (717)
Q Consensus 139 ~N~l~~~l~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~ 218 (717)
+|+|+ .+|. .+++|+.|++++|.|++ +|. .+++|++|+|++|+|++ +|. |. ++|+.|+|++|+|+.+
T Consensus 129 ~N~l~-~lp~----~l~~L~~L~Ls~N~l~~-lp~---~l~~L~~L~Ls~N~L~~-lp~-l~--~~L~~L~Ls~N~L~~l 195 (571)
T 3cvr_A 129 NNQLT-MLPE----LPALLEYINADNNQLTM-LPE---LPTSLEVLSVRNNQLTF-LPE-LP--ESLEALDVSTNLLESL 195 (571)
T ss_dssp SSCCS-CCCC----CCTTCCEEECCSSCCSC-CCC---CCTTCCEEECCSSCCSC-CCC-CC--TTCCEEECCSSCCSSC
T ss_pred CCcCC-CCCC----cCccccEEeCCCCccCc-CCC---cCCCcCEEECCCCCCCC-cch-hh--CCCCEEECcCCCCCch
Confidence 55444 2443 24445555555555443 222 34455555555555553 333 33 5555555555555544
Q ss_pred ccCchhhhhhhccCCCCCEEEeecCcccCcCchhhhhccccccEEecCCCccCCCCCccccCCC
Q 005045 219 EIGDLNFLKFLANCTSLEVLGLARNSFGGEMPISIANLSTHLRRLTMGENLMHGNIPVGIGNLV 282 (717)
Q Consensus 219 ~~~~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~~~~L~~L~l~~N~l~~~~~~~~~~l~ 282 (717)
+. +. ...+...+.|+.|+|++|.|+ .+|..++.+ ++|+.|+|++|.+++..|..+..+.
T Consensus 196 p~--~~-~~L~~~~~~L~~L~Ls~N~l~-~lp~~l~~l-~~L~~L~L~~N~l~~~~p~~l~~l~ 254 (571)
T 3cvr_A 196 PA--VP-VRNHHSEETEIFFRCRENRIT-HIPENILSL-DPTCTIILEDNPLSSRIRESLSQQT 254 (571)
T ss_dssp CC--CC---------CCEEEECCSSCCC-CCCGGGGGS-CTTEEEECCSSSCCHHHHHHHHHHH
T ss_pred hh--HH-HhhhcccccceEEecCCCcce-ecCHHHhcC-CCCCEEEeeCCcCCCcCHHHHHHhh
Confidence 31 00 000011122366667777666 566666664 4677777777776666666655543
No 352
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.84 E-value=1.7e-20 Score=182.91 Aligned_cols=153 Identities=20% Similarity=0.260 Sum_probs=105.3
Q ss_pred ecEEEcCCCcCcCCCCcCCcCCCCCCEEECCCCcccccCCcCCCCCCCCCEEEccCccccccCCccccCCCCCCEEeccC
Q 005045 12 TQDLNLTYNYLSGKIPTNLSHCTELRSFEASVNDFVGQIPNQLSSLTKLEIIGLGGSNLTGNVPAWIGNFSSLKALSLAW 91 (717)
Q Consensus 12 ~~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~ 91 (717)
-+.+++++++++ .+|..+. ++|+.|+|++|.|+++.+..|..+++|++|+|++|.|++..|..|.++++|++|+|++
T Consensus 13 ~~~v~c~~~~l~-~iP~~l~--~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~ 89 (220)
T 2v9t_B 13 NNIVDCRGKGLT-EIPTNLP--ETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYG 89 (220)
T ss_dssp TTEEECTTSCCS-SCCSSCC--TTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEECCS
T ss_pred CCEEEcCCCCcC-cCCCccC--cCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECCC
Confidence 356777777777 5565554 5677777777777766666677777777777777777766677777777777777777
Q ss_pred CcCcccCChhhhccCCCCeEeccCCCCCCCCCccccCCCCccEEEcccCcccccCCcccccCCCCcceeecccccccccC
Q 005045 92 NNLRGSIPNELGQLSGLGFFTLYGNFISGIIPSSIYNISSIYYFSVTQNQLHGQLPTDVGLTLPNLKIFAGAVNYFTGSI 171 (717)
Q Consensus 92 n~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~~l~~~~~~~l~~L~~L~l~~n~l~~~~ 171 (717)
|+|+...+..|.++++|++|+|++|+|+++.+..|.++++|++|+|++|+++ .++.
T Consensus 90 N~l~~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~-~~~~----------------------- 145 (220)
T 2v9t_B 90 NKITELPKSLFEGLFSLQLLLLNANKINCLRVDAFQDLHNLNLLSLYDNKLQ-TIAK----------------------- 145 (220)
T ss_dssp SCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCS-CCCT-----------------------
T ss_pred CcCCccCHhHccCCCCCCEEECCCCCCCEeCHHHcCCCCCCCEEECCCCcCC-EECH-----------------------
Confidence 7777555556677777777777777777766777777777777777777776 4443
Q ss_pred CccCCCCCCCCEEeccCcccc
Q 005045 172 PVSLSNASNLQVLDFAENGLT 192 (717)
Q Consensus 172 ~~~~~~l~~L~~L~l~~N~l~ 192 (717)
..|..+++|++|+|++|.+.
T Consensus 146 -~~~~~l~~L~~L~L~~N~~~ 165 (220)
T 2v9t_B 146 -GTFSPLRAIQTMHLAQNPFI 165 (220)
T ss_dssp -TTTTTCTTCCEEECCSSCEE
T ss_pred -HHHhCCCCCCEEEeCCCCcC
Confidence 34555556666666666655
No 353
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.84 E-value=1.3e-20 Score=208.03 Aligned_cols=188 Identities=19% Similarity=0.297 Sum_probs=148.6
Q ss_pred CCCEEECCCCcccccCCcCCCCCCCCCEEEccCccccccCCccccCCCCCCEEeccCCcCcccCChhhhccCCCCeEecc
Q 005045 35 ELRSFEASVNDFVGQIPNQLSSLTKLEIIGLGGSNLTGNVPAWIGNFSSLKALSLAWNNLRGSIPNELGQLSGLGFFTLY 114 (717)
Q Consensus 35 ~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~ 114 (717)
+|+.|+|++|.+++ +|..+. ++|++|+|++|.|+ .+| ..+++|++|+|++|+|++ +|. |.+ +|++|+|+
T Consensus 60 ~L~~L~Ls~n~L~~-lp~~l~--~~L~~L~Ls~N~l~-~ip---~~l~~L~~L~Ls~N~l~~-ip~-l~~--~L~~L~Ls 128 (571)
T 3cvr_A 60 QFSELQLNRLNLSS-LPDNLP--PQITVLEITQNALI-SLP---ELPASLEYLDACDNRLST-LPE-LPA--SLKHLDVD 128 (571)
T ss_dssp TCSEEECCSSCCSC-CCSCCC--TTCSEEECCSSCCS-CCC---CCCTTCCEEECCSSCCSC-CCC-CCT--TCCEEECC
T ss_pred CccEEEeCCCCCCc-cCHhHc--CCCCEEECcCCCCc-ccc---cccCCCCEEEccCCCCCC-cch-hhc--CCCEEECC
Confidence 78888888888885 666553 67888888888888 666 346788888888888885 665 555 88888888
Q ss_pred CCCCCCCCCccccCCCCccEEEcccCcccccCCcccccCCCCcceeecccccccccCCccCCCCCCCCEEeccCcccccc
Q 005045 115 GNFISGIIPSSIYNISSIYYFSVTQNQLHGQLPTDVGLTLPNLKIFAGAVNYFTGSIPVSLSNASNLQVLDFAENGLTGT 194 (717)
Q Consensus 115 ~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~~l~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~ 194 (717)
+|+|++ +|. .+++|+.|+|++|.|+ .+|. .+++|+.|++++|.+++ +|. |. ++|+.|+|++|+|+ .
T Consensus 129 ~N~l~~-lp~---~l~~L~~L~Ls~N~l~-~lp~----~l~~L~~L~Ls~N~L~~-lp~-l~--~~L~~L~Ls~N~L~-~ 194 (571)
T 3cvr_A 129 NNQLTM-LPE---LPALLEYINADNNQLT-MLPE----LPTSLEVLSVRNNQLTF-LPE-LP--ESLEALDVSTNLLE-S 194 (571)
T ss_dssp SSCCSC-CCC---CCTTCCEEECCSSCCS-CCCC----CCTTCCEEECCSSCCSC-CCC-CC--TTCCEEECCSSCCS-S
T ss_pred CCcCCC-CCC---cCccccEEeCCCCccC-cCCC----cCCCcCEEECCCCCCCC-cch-hh--CCCCEEECcCCCCC-c
Confidence 888886 444 5788888888888887 5766 46788888888888886 555 65 89999999999999 6
Q ss_pred CCCCccCCCCC-------CeeeccccccCCcccCchhhhhhhccCCCCCEEEeecCcccCcCchhhhhcc
Q 005045 195 IPGNFGSLKDL-------VRLNFDQNELGSREIGDLNFLKFLANCTSLEVLGLARNSFGGEMPISIANLS 257 (717)
Q Consensus 195 ~~~~~~~l~~L-------~~L~l~~N~l~~~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~~ 257 (717)
+|. |.. +| +.|+|++|+|+.++ ..+..+++|+.|+|++|.+++.+|..+..+.
T Consensus 195 lp~-~~~--~L~~~~~~L~~L~Ls~N~l~~lp-------~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~ 254 (571)
T 3cvr_A 195 LPA-VPV--RNHHSEETEIFFRCRENRITHIP-------ENILSLDPTCTIILEDNPLSSRIRESLSQQT 254 (571)
T ss_dssp CCC-CC----------CCEEEECCSSCCCCCC-------GGGGGSCTTEEEECCSSSCCHHHHHHHHHHH
T ss_pred hhh-HHH--hhhcccccceEEecCCCcceecC-------HHHhcCCCCCEEEeeCCcCCCcCHHHHHHhh
Confidence 666 554 77 99999999999875 4566699999999999999999999888764
No 354
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.84 E-value=3.6e-21 Score=203.03 Aligned_cols=182 Identities=19% Similarity=0.205 Sum_probs=132.5
Q ss_pred eecEEEcCCCcCcCCCCcCCcCCCCCCEEECCCCcccccCCcCCC-CCCCCCEEEccCccccccCCccccCCCCCCEEec
Q 005045 11 MTQDLNLTYNYLSGKIPTNLSHCTELRSFEASVNDFVGQIPNQLS-SLTKLEIIGLGGSNLTGNVPAWIGNFSSLKALSL 89 (717)
Q Consensus 11 ~~~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~-~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L 89 (717)
..+++++++++++ .+|..+. +.++.|+|++|.|++..+..|. ++++|++|+|++|+|++..+..|..+++|++|+|
T Consensus 19 ~~~~l~c~~~~l~-~iP~~~~--~~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~L 95 (361)
T 2xot_A 19 ASNILSCSKQQLP-NVPQSLP--SYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDL 95 (361)
T ss_dssp ETTEEECCSSCCS-SCCSSCC--TTCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEEC
T ss_pred CCCEEEeCCCCcC-ccCccCC--CCCCEEECCCCCCCccChhhhhhcccccCEEECCCCcCCccChhhccCCCCCCEEEC
Confidence 3467888888887 5666554 4578888888888876666676 7888888888888888666677888888888888
Q ss_pred cCCcCcccCChhhhccCCCCeEeccCCCCCCCCCccccCCCCccEEEcccCcccccCCcccccCCCCcceeecccccccc
Q 005045 90 AWNNLRGSIPNELGQLSGLGFFTLYGNFISGIIPSSIYNISSIYYFSVTQNQLHGQLPTDVGLTLPNLKIFAGAVNYFTG 169 (717)
Q Consensus 90 ~~n~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~~l~~~~~~~l~~L~~L~l~~n~l~~ 169 (717)
++|+|+...+..|.++++|++|+|++|+|+++.+..|.++++|+.|+|++|+|+ .+|...+..
T Consensus 96 s~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~-~l~~~~~~~---------------- 158 (361)
T 2xot_A 96 SSNHLHTLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQIS-RFPVELIKD---------------- 158 (361)
T ss_dssp CSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCC-SCCGGGTC-----------------
T ss_pred CCCcCCcCCHHHhCCCcCCCEEECCCCcccEECHHHhCCcccCCEEECCCCcCC-eeCHHHhcC----------------
Confidence 888888777777888888888888888888777788888888888888888887 566555411
Q ss_pred cCCccCCCCCCCCEEeccCccccccCCCCccCCCC--CCeeeccccccCC
Q 005045 170 SIPVSLSNASNLQVLDFAENGLTGTIPGNFGSLKD--LVRLNFDQNELGS 217 (717)
Q Consensus 170 ~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~--L~~L~l~~N~l~~ 217 (717)
+..+++|+.|+|++|+|+...+..|..++. ++.|+|++|.+..
T Consensus 159 -----~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~~~l~~l~l~~N~~~C 203 (361)
T 2xot_A 159 -----GNKLPKLMLLDLSSNKLKKLPLTDLQKLPAWVKNGLYLHNNPLEC 203 (361)
T ss_dssp --------CTTCCEEECCSSCCCCCCHHHHHHSCHHHHTTEECCSSCEEC
T ss_pred -----cccCCcCCEEECCCCCCCccCHHHhhhccHhhcceEEecCCCccC
Confidence 144566777777777776544455666665 3677777777653
No 355
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.84 E-value=4e-21 Score=196.00 Aligned_cols=186 Identities=21% Similarity=0.301 Sum_probs=107.1
Q ss_pred EEEcCCCcCcCCCCcCCcCCCCCCEEECCCCcccccCCcCCCCCCCCCEEEccCccccccCCccccCCCCCCEEeccCCc
Q 005045 14 DLNLTYNYLSGKIPTNLSHCTELRSFEASVNDFVGQIPNQLSSLTKLEIIGLGGSNLTGNVPAWIGNFSSLKALSLAWNN 93 (717)
Q Consensus 14 ~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~ 93 (717)
.+.+..+.+.+..+ +..+++|++|++++|.++ .++. +..+++|++|+|++|++++. +. +..+++|++|+|++|+
T Consensus 28 ~~~l~~~~~~~~~~--~~~l~~L~~L~l~~~~i~-~~~~-~~~l~~L~~L~L~~n~l~~~-~~-l~~l~~L~~L~l~~n~ 101 (291)
T 1h6t_A 28 KDNLKKKSVTDAVT--QNELNSIDQIIANNSDIK-SVQG-IQYLPNVTKLFLNGNKLTDI-KP-LANLKNLGWLFLDENK 101 (291)
T ss_dssp HHHTTCSCTTSEEC--HHHHHTCCEEECTTSCCC-CCTT-GGGCTTCCEEECCSSCCCCC-GG-GTTCTTCCEEECCSSC
T ss_pred HHHhcCCCcccccc--hhhcCcccEEEccCCCcc-cChh-HhcCCCCCEEEccCCccCCC-cc-cccCCCCCEEECCCCc
Confidence 34455555543322 345566666666666665 2332 55666666666666666633 22 5666666666666666
Q ss_pred CcccCChhhhccCCCCeEeccCCCCCCCCCccccCCCCccEEEcccCcccccCCcccccCCCCcceeecccccccccCCc
Q 005045 94 LRGSIPNELGQLSGLGFFTLYGNFISGIIPSSIYNISSIYYFSVTQNQLHGQLPTDVGLTLPNLKIFAGAVNYFTGSIPV 173 (717)
Q Consensus 94 l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~~l~~~~~~~l~~L~~L~l~~n~l~~~~~~ 173 (717)
+++ ++ .+..+++|++|+|++|+++++ ..+..+++|+.|++++|+++ +. .
T Consensus 102 l~~-~~-~l~~l~~L~~L~L~~n~i~~~--~~l~~l~~L~~L~l~~n~l~-------------------------~~--~ 150 (291)
T 1h6t_A 102 VKD-LS-SLKDLKKLKSLSLEHNGISDI--NGLVHLPQLESLYLGNNKIT-------------------------DI--T 150 (291)
T ss_dssp CCC-GG-GGTTCTTCCEEECTTSCCCCC--GGGGGCTTCCEEECCSSCCC-------------------------CC--G
T ss_pred CCC-Ch-hhccCCCCCEEECCCCcCCCC--hhhcCCCCCCEEEccCCcCC-------------------------cc--h
Confidence 653 22 256666666666666666542 34555566666666666555 22 3
Q ss_pred cCCCCCCCCEEeccCccccccCCCCccCCCCCCeeeccccccCCcccCchhhhhhhccCCCCCEEEeecCccc
Q 005045 174 SLSNASNLQVLDFAENGLTGTIPGNFGSLKDLVRLNFDQNELGSREIGDLNFLKFLANCTSLEVLGLARNSFG 246 (717)
Q Consensus 174 ~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~l~~L~~L~L~~N~l~ 246 (717)
.+..+++|++|++++|++++..+ +..+++|+.|++++|.++.++ .+..+++|+.|++++|.++
T Consensus 151 ~l~~l~~L~~L~L~~N~l~~~~~--l~~l~~L~~L~L~~N~i~~l~--------~l~~l~~L~~L~l~~n~i~ 213 (291)
T 1h6t_A 151 VLSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSKNHISDLR--------ALAGLKNLDVLELFSQECL 213 (291)
T ss_dssp GGGGCTTCSEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCBCG--------GGTTCTTCSEEEEEEEEEE
T ss_pred hhccCCCCCEEEccCCccccchh--hcCCCccCEEECCCCcCCCCh--------hhccCCCCCEEECcCCccc
Confidence 45555666666666666664333 666666666666666666542 2566677777777777766
No 356
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.84 E-value=3.1e-21 Score=215.59 Aligned_cols=191 Identities=21% Similarity=0.266 Sum_probs=115.3
Q ss_pred eecEEEcCCCcCcCCCCcCCcCCCCCCEEECCCCcccccCCcCCCCCCCCCEEEccCccccccCCccccCCCCCCEEecc
Q 005045 11 MTQDLNLTYNYLSGKIPTNLSHCTELRSFEASVNDFVGQIPNQLSSLTKLEIIGLGGSNLTGNVPAWIGNFSSLKALSLA 90 (717)
Q Consensus 11 ~~~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~ 90 (717)
.+..+.|+.+.+....+ +..+++|+.|++++|.+. .+| .|..+++|+.|+|++|.|++..| +..+++|+.|+|+
T Consensus 22 ~l~~l~l~~~~i~~~~~--~~~L~~L~~L~l~~n~i~-~l~-~l~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls 95 (605)
T 1m9s_A 22 ETIKDNLKKKSVTDAVT--QNELNSIDQIIANNSDIK-SVQ-GIQYLPNVTKLFLNGNKLTDIKP--LTNLKNLGWLFLD 95 (605)
T ss_dssp HHHHHHTTCSCTTSEEC--HHHHTTCCCCBCTTCCCC-CCT-TGGGCTTCCEEECTTSCCCCCGG--GGGCTTCCEEECC
T ss_pred HHHHHhccCCCcccccc--hhcCCCCCEEECcCCCCC-CCh-HHccCCCCCEEEeeCCCCCCChh--hccCCCCCEEECc
Confidence 34455666666664433 466677777777777776 344 36777777777777777774333 6677777777777
Q ss_pred CCcCcccCChhhhccCCCCeEeccCCCCCCCCCccccCCCCccEEEcccCcccccCCcccccCCCCcceeeccccccccc
Q 005045 91 WNNLRGSIPNELGQLSGLGFFTLYGNFISGIIPSSIYNISSIYYFSVTQNQLHGQLPTDVGLTLPNLKIFAGAVNYFTGS 170 (717)
Q Consensus 91 ~n~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~~l~~~~~~~l~~L~~L~l~~n~l~~~ 170 (717)
+|.|++ ++ .|..+++|+.|+|++|.|+++ ..+..+++|+.|+|++|.++ .+ ..+..+++|+.|+|++|.+.+.
T Consensus 96 ~N~l~~-l~-~l~~l~~L~~L~Ls~N~l~~l--~~l~~l~~L~~L~Ls~N~l~-~l--~~l~~l~~L~~L~Ls~N~l~~~ 168 (605)
T 1m9s_A 96 ENKIKD-LS-SLKDLKKLKSLSLEHNGISDI--NGLVHLPQLESLYLGNNKIT-DI--TVLSRLTKLDTLSLEDNQISDI 168 (605)
T ss_dssp SSCCCC-CT-TSTTCTTCCEEECTTSCCCCC--GGGGGCTTCSEEECCSSCCC-CC--GGGGSCTTCSEEECCSSCCCCC
T ss_pred CCCCCC-Ch-hhccCCCCCEEEecCCCCCCC--ccccCCCccCEEECCCCccC-Cc--hhhcccCCCCEEECcCCcCCCc
Confidence 777763 33 566777777777777777642 45667777777777777776 33 2233555555555555555544
Q ss_pred CCccCCCCCCCCEEeccCccccccCCCCccCCCCCCeeeccccccCCc
Q 005045 171 IPVSLSNASNLQVLDFAENGLTGTIPGNFGSLKDLVRLNFDQNELGSR 218 (717)
Q Consensus 171 ~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~ 218 (717)
.| +..+++|+.|+|++|.|++. + .+..+++|+.|+|++|.+...
T Consensus 169 ~~--l~~l~~L~~L~Ls~N~i~~l-~-~l~~l~~L~~L~L~~N~l~~~ 212 (605)
T 1m9s_A 169 VP--LAGLTKLQNLYLSKNHISDL-R-ALAGLKNLDVLELFSQECLNK 212 (605)
T ss_dssp GG--GTTCTTCCEEECCSSCCCBC-G-GGTTCTTCSEEECCSEEEECC
T ss_pred hh--hccCCCCCEEECcCCCCCCC-h-HHccCCCCCEEEccCCcCcCC
Confidence 33 55555555555555555532 2 345555555555555555443
No 357
>1zar_A RIO2 kinase; serine kinase, winged-helix, RIO domain, ADP-Mn complex, rRNA processing, transferase; HET: ADP; 1.75A {Archaeoglobus fulgidus} SCOP: a.4.5.56 d.144.1.9 PDB: 1tqi_A* 1tqp_A* 1tqm_A* 1zao_A*
Probab=99.84 E-value=1e-21 Score=198.94 Aligned_cols=157 Identities=18% Similarity=0.128 Sum_probs=122.6
Q ss_pred ccccccccccCcccccceEEEEeCCCchhhhHHhHhhhh------------------hHHHHHHHHHHHHhcCCCCceeE
Q 005045 388 TDNFSKENLIGTGSFGSVYKGTLGDGTIVAIKVLKLQQQ------------------GALKSFIDECNALKSTRHRNILR 449 (717)
Q Consensus 388 ~~~y~~~~~ig~g~~g~v~~~~~~~~~~vavK~~~~~~~------------------~~~~~~~~e~~~l~~l~h~ni~~ 449 (717)
...|.+.+.||+|++|.||+|.+.+|+.||+|++..... .....+.+|++++++++|+++..
T Consensus 89 ~~~~~~~~~iG~G~~g~Vy~~~~~~g~~valK~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~E~~~l~~l~~~~v~~ 168 (282)
T 1zar_A 89 GKVDAIGKLMGEGKESAVFNCYSEKFGECVVKFHKVGHTSFKKVKEKRDYGDLHFSVLAIRSARNEFRALQKLQGLAVPK 168 (282)
T ss_dssp TSCSEEEEEEEECSSEEEEEEEETTTEEEEEEEECC------CCCC-------CHHHHHHHHHHHHHHHHHHTTTSSSCC
T ss_pred CeEEEecCEeccCCCceEEEEEeCCCCEEEEEEEECCCCchhhhhhhhhhcchhhHHHHHHHHHHHHHHHHhccCCCcCe
Confidence 445566699999999999999997899999999863321 23567889999999998555555
Q ss_pred EEEeeccccCCCCceEEEEEecCCCCChhhhccCCCCCcccccccCHHHHHHHHHHHHHHHHHHHhcCCCCeeecCCCCC
Q 005045 450 VITACSSVDLEGNDFKALVFEFMSNGNLDQWLHPSPAEHYQFKKLSVIQRLNIAIDVASALDYLHHHCDTPIAHCDLKPS 529 (717)
Q Consensus 450 ~~~~~~~~~~~~~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~dlkp~ 529 (717)
+++. +..++||||++|++|.+ +... ....++.||+.|++|||+. ||+||||||+
T Consensus 169 ~~~~---------~~~~lvmE~~~g~~L~~-l~~~-------------~~~~i~~qi~~~l~~lH~~---giiHrDlkp~ 222 (282)
T 1zar_A 169 VYAW---------EGNAVLMELIDAKELYR-VRVE-------------NPDEVLDMILEEVAKFYHR---GIVHGDLSQY 222 (282)
T ss_dssp EEEE---------ETTEEEEECCCCEEGGG-CCCS-------------CHHHHHHHHHHHHHHHHHT---TEECSCCSTT
T ss_pred EEec---------cceEEEEEecCCCcHHH-cchh-------------hHHHHHHHHHHHHHHHHHC---CCEeCCCCHH
Confidence 4322 35699999999999998 4321 2346999999999999998 9999999999
Q ss_pred CEEeCCCCceEEeeeccchhcccccCCCCCCcceeecccccccccCCCccCC-----------CCCcccchhh
Q 005045 530 NVLLDKDMTAHVGDFGLAKFLFEISDNPSKNQTVSIGLKGSIGYIPPEHMNG-----------QVSILGDIYS 591 (717)
Q Consensus 530 NIll~~~~~~kl~Dfg~~~~~~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~-----------~~~~~sDvws 591 (717)
||+++ +|.+||+|||.|+. +..|.|||.+.+ +++..+|+|.
T Consensus 223 NILl~-~~~vkl~DFG~a~~--------------------~~~~~a~e~l~rdv~~i~~~f~~~~~~~~~~~~ 274 (282)
T 1zar_A 223 NVLVS-EEGIWIIDFPQSVE--------------------VGEEGWREILERDVRNIITYFSRTYRTEKDINS 274 (282)
T ss_dssp SEEEE-TTEEEECCCTTCEE--------------------TTSTTHHHHHHHHHHHHHHHHHHHHCCCCCHHH
T ss_pred HEEEE-CCcEEEEECCCCeE--------------------CCCCCHHHHHHHHHHHHHHHHHHhcCCCCChHH
Confidence 99999 99999999999873 334688888643 3456666665
No 358
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.84 E-value=1.8e-20 Score=182.67 Aligned_cols=153 Identities=20% Similarity=0.312 Sum_probs=115.1
Q ss_pred CEEEccCccccccCCccccCCCCCCEEeccCCcCcccCChhhhccCCCCeEeccCCCCCCCCCccccCCCCccEEEcccC
Q 005045 61 EIIGLGGSNLTGNVPAWIGNFSSLKALSLAWNNLRGSIPNELGQLSGLGFFTLYGNFISGIIPSSIYNISSIYYFSVTQN 140 (717)
Q Consensus 61 ~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N 140 (717)
+.++++++.++ .+|..+. ++|+.|+|++|+|++..+..|..+++|++|+|++|+|+++.|..|.++++|++|+|++|
T Consensus 14 ~~v~c~~~~l~-~iP~~l~--~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N 90 (220)
T 2v9t_B 14 NIVDCRGKGLT-EIPTNLP--ETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGN 90 (220)
T ss_dssp TEEECTTSCCS-SCCSSCC--TTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEECCSS
T ss_pred CEEEcCCCCcC-cCCCccC--cCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECCCC
Confidence 56777777777 5665554 56777888888777666667777778888888888887777777888888888888888
Q ss_pred cccccCCcccccCCCCcceeecccccccccCCccCCCCCCCCEEeccCccccccCCCCccCCCCCCeeeccccccCC
Q 005045 141 QLHGQLPTDVGLTLPNLKIFAGAVNYFTGSIPVSLSNASNLQVLDFAENGLTGTIPGNFGSLKDLVRLNFDQNELGS 217 (717)
Q Consensus 141 ~l~~~l~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~ 217 (717)
+|+ .+|...|..+++|+.|+|++|.+++..+..|..+++|++|+|++|+|++..+..|..+++|+.|++++|.+..
T Consensus 91 ~l~-~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~c 166 (220)
T 2v9t_B 91 KIT-ELPKSLFEGLFSLQLLLLNANKINCLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLRAIQTMHLAQNPFIC 166 (220)
T ss_dssp CCC-CCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCEEC
T ss_pred cCC-ccCHhHccCCCCCCEEECCCCCCCEeCHHHcCCCCCCCEEECCCCcCCEECHHHHhCCCCCCEEEeCCCCcCC
Confidence 887 6777666667777777777777776777778888888888888888886666667777777777777777653
No 359
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.84 E-value=1e-20 Score=199.55 Aligned_cols=176 Identities=22% Similarity=0.211 Sum_probs=115.7
Q ss_pred CEEEccCccccccCCccccCCCCCCEEeccCCcCcccCChhhh-ccCCCCeEeccCCCCCCCCCccccCCCCccEEEccc
Q 005045 61 EIIGLGGSNLTGNVPAWIGNFSSLKALSLAWNNLRGSIPNELG-QLSGLGFFTLYGNFISGIIPSSIYNISSIYYFSVTQ 139 (717)
Q Consensus 61 ~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~-~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~ 139 (717)
+.++++++.++ .+|..+. ..++.|+|++|+|++..+..|. ++++|++|+|++|+|+++.+..|.++++|++|+|++
T Consensus 21 ~~l~c~~~~l~-~iP~~~~--~~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~ 97 (361)
T 2xot_A 21 NILSCSKQQLP-NVPQSLP--SYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSS 97 (361)
T ss_dssp TEEECCSSCCS-SCCSSCC--TTCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCS
T ss_pred CEEEeCCCCcC-ccCccCC--CCCCEEECCCCCCCccChhhhhhcccccCEEECCCCcCCccChhhccCCCCCCEEECCC
Confidence 56777777777 5665554 3467777777777766666666 777777777777777766667777777777777777
Q ss_pred CcccccCCcccccCCCCcceeecccccccccCCccCCCCCCCCEEeccCccccccCCCCc---cCCCCCCeeeccccccC
Q 005045 140 NQLHGQLPTDVGLTLPNLKIFAGAVNYFTGSIPVSLSNASNLQVLDFAENGLTGTIPGNF---GSLKDLVRLNFDQNELG 216 (717)
Q Consensus 140 N~l~~~l~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~---~~l~~L~~L~l~~N~l~ 216 (717)
|+|+ .++...|..+++|+.|+|++|.|....+..|.++++|+.|+|++|+|+...+..| ..+++|+.|+|++|+|+
T Consensus 98 N~l~-~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~~l~~L~~L~L~~N~l~ 176 (361)
T 2xot_A 98 NHLH-TLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQISRFPVELIKDGNKLPKLMLLDLSSNKLK 176 (361)
T ss_dssp SCCC-EECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCSCCGGGTC----CTTCCEEECCSSCCC
T ss_pred CcCC-cCCHHHhCCCcCCCEEECCCCcccEECHHHhCCcccCCEEECCCCcCCeeCHHHhcCcccCCcCCEEECCCCCCC
Confidence 7776 5555555566666666666666666666677777777777777777774444444 45666666666666666
Q ss_pred CcccCchhhhhhhccCCC--CCEEEeecCccc
Q 005045 217 SREIGDLNFLKFLANCTS--LEVLGLARNSFG 246 (717)
Q Consensus 217 ~~~~~~~~~~~~~~~l~~--L~~L~L~~N~l~ 246 (717)
.++ +..+..++. |+.|+|++|.+.
T Consensus 177 ~l~------~~~~~~l~~~~l~~l~l~~N~~~ 202 (361)
T 2xot_A 177 KLP------LTDLQKLPAWVKNGLYLHNNPLE 202 (361)
T ss_dssp CCC------HHHHHHSCHHHHTTEECCSSCEE
T ss_pred ccC------HHHhhhccHhhcceEEecCCCcc
Confidence 655 444555554 255666666655
No 360
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.83 E-value=8e-21 Score=212.26 Aligned_cols=205 Identities=20% Similarity=0.254 Sum_probs=120.5
Q ss_pred CCCCCEEeccCCcCcccCChhhhccCCCCeEeccCCCCCCCCCccccCCCCccEEEcccCcccccCCcccccCCCCccee
Q 005045 81 FSSLKALSLAWNNLRGSIPNELGQLSGLGFFTLYGNFISGIIPSSIYNISSIYYFSVTQNQLHGQLPTDVGLTLPNLKIF 160 (717)
Q Consensus 81 l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~~l~~~~~~~l~~L~~L 160 (717)
+..+..+.++.+.+....+ +..+++|+.|+|++|.|..+ + .|..+++|+.|+|++|.++ .++. +..+++|+.|
T Consensus 20 l~~l~~l~l~~~~i~~~~~--~~~L~~L~~L~l~~n~i~~l-~-~l~~l~~L~~L~Ls~N~l~-~~~~--l~~l~~L~~L 92 (605)
T 1m9s_A 20 FAETIKDNLKKKSVTDAVT--QNELNSIDQIIANNSDIKSV-Q-GIQYLPNVTKLFLNGNKLT-DIKP--LTNLKNLGWL 92 (605)
T ss_dssp HHHHHHHHTTCSCTTSEEC--HHHHTTCCCCBCTTCCCCCC-T-TGGGCTTCCEEECTTSCCC-CCGG--GGGCTTCCEE
T ss_pred HHHHHHHhccCCCcccccc--hhcCCCCCEEECcCCCCCCC-h-HHccCCCCCEEEeeCCCCC-CChh--hccCCCCCEE
Confidence 3446667777777774443 57788888888888888843 3 5788888888888888887 3333 3345555555
Q ss_pred ecccccccccCCccCCCCCCCCEEeccCccccccCCCCccCCCCCCeeeccccccCCcccCchhhhhhhccCCCCCEEEe
Q 005045 161 AGAVNYFTGSIPVSLSNASNLQVLDFAENGLTGTIPGNFGSLKDLVRLNFDQNELGSREIGDLNFLKFLANCTSLEVLGL 240 (717)
Q Consensus 161 ~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~l~~L~~L~L 240 (717)
+|++|.+... ..+. .+++|+.|+|++|.|..++ .+..+++|+.|+|
T Consensus 93 ~Ls~N~l~~l--~~l~------------------------~l~~L~~L~Ls~N~l~~l~--------~l~~l~~L~~L~L 138 (605)
T 1m9s_A 93 FLDENKIKDL--SSLK------------------------DLKKLKSLSLEHNGISDIN--------GLVHLPQLESLYL 138 (605)
T ss_dssp ECCSSCCCCC--TTST------------------------TCTTCCEEECTTSCCCCCG--------GGGGCTTCSEEEC
T ss_pred ECcCCCCCCC--hhhc------------------------cCCCCCEEEecCCCCCCCc--------cccCCCccCEEEC
Confidence 5555554421 1344 4444444444444444321 2444555555555
Q ss_pred ecCcccCcCchhhhhccccccEEecCCCccCCCCCccccCCCCCCEEEccCCcCccccchhhhcCCCCCeEEcccCcCCC
Q 005045 241 ARNSFGGEMPISIANLSTHLRRLTMGENLMHGNIPVGIGNLVNLNLLGLEGNNLSGSVPEVIGRLNKLEGLGLNVNKFSG 320 (717)
Q Consensus 241 ~~N~l~~~~p~~~~~~~~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~ 320 (717)
++|.+++ + ..+..+ ++|+.|+|++|.+.+..| +..+++|+.|+|++|+|++ ++ .+..+++|+.|+|++|++++
T Consensus 139 s~N~l~~-l-~~l~~l-~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~i~~-l~-~l~~l~~L~~L~L~~N~l~~ 211 (605)
T 1m9s_A 139 GNNKITD-I-TVLSRL-TKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSKNHISD-LR-ALAGLKNLDVLELFSQECLN 211 (605)
T ss_dssp CSSCCCC-C-GGGGSC-TTCSEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCB-CG-GGTTCTTCSEEECCSEEEEC
T ss_pred CCCccCC-c-hhhccc-CCCCEEECcCCcCCCchh--hccCCCCCEEECcCCCCCC-Ch-HHccCCCCCEEEccCCcCcC
Confidence 5555552 2 233333 355555555555554333 6666677777777777764 33 46667777777777777765
Q ss_pred CCCcccccccccc
Q 005045 321 LIPSSLGNLTILT 333 (717)
Q Consensus 321 ~~~~~~~~l~~L~ 333 (717)
.....+..+..+.
T Consensus 212 ~p~~~~~~l~~~~ 224 (605)
T 1m9s_A 212 KPINHQSNLVVPN 224 (605)
T ss_dssp CCCCCCSSCEEEC
T ss_pred CcccccccEEecc
Confidence 5444444443333
No 361
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.83 E-value=2.9e-20 Score=189.62 Aligned_cols=168 Identities=18% Similarity=0.226 Sum_probs=140.6
Q ss_pred eecEEEcCCCcCcCCCCcCCcCCCCCCEEECCCCcccccCCcCCCCCCCCCEEEccCccccccCCccccCCCCCCEEecc
Q 005045 11 MTQDLNLTYNYLSGKIPTNLSHCTELRSFEASVNDFVGQIPNQLSSLTKLEIIGLGGSNLTGNVPAWIGNFSSLKALSLA 90 (717)
Q Consensus 11 ~~~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~ 90 (717)
.+++|++++|.++.. + .+..+++|++|+|++|.+++..+ +.++++|++|+|++|.+++ +|. +..+++|++|+|+
T Consensus 47 ~L~~L~l~~~~i~~~-~-~~~~l~~L~~L~L~~n~l~~~~~--l~~l~~L~~L~l~~n~l~~-~~~-l~~l~~L~~L~L~ 120 (291)
T 1h6t_A 47 SIDQIIANNSDIKSV-Q-GIQYLPNVTKLFLNGNKLTDIKP--LANLKNLGWLFLDENKVKD-LSS-LKDLKKLKSLSLE 120 (291)
T ss_dssp TCCEEECTTSCCCCC-T-TGGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCC-GGG-GTTCTTCCEEECT
T ss_pred cccEEEccCCCcccC-h-hHhcCCCCCEEEccCCccCCCcc--cccCCCCCEEECCCCcCCC-Chh-hccCCCCCEEECC
Confidence 789999999999854 4 48999999999999999996544 9999999999999999994 554 9999999999999
Q ss_pred CCcCcccCChhhhccCCCCeEeccCCCCCCCCCccccCCCCccEEEcccCcccccCCcccccCCCCcceeeccccccccc
Q 005045 91 WNNLRGSIPNELGQLSGLGFFTLYGNFISGIIPSSIYNISSIYYFSVTQNQLHGQLPTDVGLTLPNLKIFAGAVNYFTGS 170 (717)
Q Consensus 91 ~n~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~~l~~~~~~~l~~L~~L~l~~n~l~~~ 170 (717)
+|++++. ..+..+++|+.|+|++|+++++ ..+..+++|++|+|++|.++ .++. +..+++|+.|++++|.++..
T Consensus 121 ~n~i~~~--~~l~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~L~~N~l~-~~~~--l~~l~~L~~L~L~~N~i~~l 193 (291)
T 1h6t_A 121 HNGISDI--NGLVHLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQIS-DIVP--LAGLTKLQNLYLSKNHISDL 193 (291)
T ss_dssp TSCCCCC--GGGGGCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCC-CCGG--GTTCTTCCEEECCSSCCCBC
T ss_pred CCcCCCC--hhhcCCCCCCEEEccCCcCCcc--hhhccCCCCCEEEccCCccc-cchh--hcCCCccCEEECCCCcCCCC
Confidence 9999953 5799999999999999999965 78999999999999999998 4444 45677777777777777743
Q ss_pred CCccCCCCCCCCEEeccCccccc
Q 005045 171 IPVSLSNASNLQVLDFAENGLTG 193 (717)
Q Consensus 171 ~~~~~~~l~~L~~L~l~~N~l~~ 193 (717)
+ .+..+++|+.|++++|+++.
T Consensus 194 -~-~l~~l~~L~~L~l~~n~i~~ 214 (291)
T 1h6t_A 194 -R-ALAGLKNLDVLELFSQECLN 214 (291)
T ss_dssp -G-GGTTCTTCSEEEEEEEEEEC
T ss_pred -h-hhccCCCCCEEECcCCcccC
Confidence 2 36677777777777777763
No 362
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.83 E-value=6.3e-20 Score=178.91 Aligned_cols=152 Identities=22% Similarity=0.236 Sum_probs=85.6
Q ss_pred CEEEccCccccccCCccccCCCCCCEEeccCCcCcccCC-hhhhccCCCCeEeccCCCCCCCCCccccCCCCccEEEccc
Q 005045 61 EIIGLGGSNLTGNVPAWIGNFSSLKALSLAWNNLRGSIP-NELGQLSGLGFFTLYGNFISGIIPSSIYNISSIYYFSVTQ 139 (717)
Q Consensus 61 ~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~-~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~ 139 (717)
+.+++++|.++ .+|..+. ..+++|+|++|+|++..+ ..|..+++|++|+|++|+|+++.+..|.++++|++|+|++
T Consensus 14 ~~l~~s~n~l~-~iP~~~~--~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~ 90 (220)
T 2v70_A 14 TTVDCSNQKLN-KIPEHIP--QYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTS 90 (220)
T ss_dssp TEEECCSSCCS-SCCSCCC--TTCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCS
T ss_pred CEeEeCCCCcc-cCccCCC--CCCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCEECHHHhCCCCCCCEEECCC
Confidence 35555555555 3444332 234555555555554433 3355555555555555555555555555555666666666
Q ss_pred CcccccCCcccccCCCCcceeecccccccccCCccCCCCCCCCEEeccCccccccCCCCccCCCCCCeeeccccccC
Q 005045 140 NQLHGQLPTDVGLTLPNLKIFAGAVNYFTGSIPVSLSNASNLQVLDFAENGLTGTIPGNFGSLKDLVRLNFDQNELG 216 (717)
Q Consensus 140 N~l~~~l~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~ 216 (717)
|+++ .++...+..+++|++|+|++|.+++..|..|..+++|++|+|++|+|++..|..|..+++|+.|++++|.+.
T Consensus 91 N~l~-~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~ 166 (220)
T 2v70_A 91 NRLE-NVQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQITTVAPGAFDTLHSLSTLNLLANPFN 166 (220)
T ss_dssp SCCC-CCCGGGGTTCSSCCEEECTTSCCCCBCTTSSTTCTTCSEEECTTSCCCCBCTTTTTTCTTCCEEECCSCCEE
T ss_pred CccC-ccCHhHhcCCcCCCEEECCCCcCCeECHhHcCCCccCCEEECCCCcCCEECHHHhcCCCCCCEEEecCcCCc
Confidence 6555 444444445555555555555555555566666666666666666666555666666666666666666554
No 363
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.83 E-value=6.2e-20 Score=178.94 Aligned_cols=153 Identities=19% Similarity=0.234 Sum_probs=91.8
Q ss_pred cEEEcCCCcCcCCCCcCCcCCCCCCEEECCCCcccccCC-cCCCCCCCCCEEEccCccccccCCccccCCCCCCEEeccC
Q 005045 13 QDLNLTYNYLSGKIPTNLSHCTELRSFEASVNDFVGQIP-NQLSSLTKLEIIGLGGSNLTGNVPAWIGNFSSLKALSLAW 91 (717)
Q Consensus 13 ~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p-~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~ 91 (717)
+++++++|+++ .+|..+. +.+++|+|++|.+++..| ..|.++++|++|+|++|.|++..+..|..+++|++|+|++
T Consensus 14 ~~l~~s~n~l~-~iP~~~~--~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~ 90 (220)
T 2v70_A 14 TTVDCSNQKLN-KIPEHIP--QYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTS 90 (220)
T ss_dssp TEEECCSSCCS-SCCSCCC--TTCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCS
T ss_pred CEeEeCCCCcc-cCccCCC--CCCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCEECHHHhCCCCCCCEEECCC
Confidence 46666666666 3554443 345666666666664433 3355666666666666666655555566666666666666
Q ss_pred CcCcccCChhhhccCCCCeEeccCCCCCCCCCccccCCCCccEEEcccCcccccCCcccccCCCCcceeecccccccccC
Q 005045 92 NNLRGSIPNELGQLSGLGFFTLYGNFISGIIPSSIYNISSIYYFSVTQNQLHGQLPTDVGLTLPNLKIFAGAVNYFTGSI 171 (717)
Q Consensus 92 n~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~~l~~~~~~~l~~L~~L~l~~n~l~~~~ 171 (717)
|+|++..+..|.++++|++|+|++|+|+++.|..|.++++|++|+|++|+++ +..
T Consensus 91 N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~-------------------------~~~ 145 (220)
T 2v70_A 91 NRLENVQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQIT-------------------------TVA 145 (220)
T ss_dssp SCCCCCCGGGGTTCSSCCEEECTTSCCCCBCTTSSTTCTTCSEEECTTSCCC-------------------------CBC
T ss_pred CccCccCHhHhcCCcCCCEEECCCCcCCeECHhHcCCCccCCEEECCCCcCC-------------------------EEC
Confidence 6666555555666666666666666666555555555555555555555555 445
Q ss_pred CccCCCCCCCCEEeccCccccc
Q 005045 172 PVSLSNASNLQVLDFAENGLTG 193 (717)
Q Consensus 172 ~~~~~~l~~L~~L~l~~N~l~~ 193 (717)
|..|..+++|++|+|++|.+.+
T Consensus 146 ~~~~~~l~~L~~L~L~~N~l~c 167 (220)
T 2v70_A 146 PGAFDTLHSLSTLNLLANPFNC 167 (220)
T ss_dssp TTTTTTCTTCCEEECCSCCEEC
T ss_pred HHHhcCCCCCCEEEecCcCCcC
Confidence 5666677777777777777764
No 364
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.82 E-value=1.7e-19 Score=177.15 Aligned_cols=152 Identities=16% Similarity=0.159 Sum_probs=79.7
Q ss_pred cEEEcCCCcCcCCCCcCCcCCCCCCEEECCCCcccccCCcCCCCCCCCCEEEccCccccccCCccccCCCCCCEEeccCC
Q 005045 13 QDLNLTYNYLSGKIPTNLSHCTELRSFEASVNDFVGQIPNQLSSLTKLEIIGLGGSNLTGNVPAWIGNFSSLKALSLAWN 92 (717)
Q Consensus 13 ~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n 92 (717)
+.++.++++++ .+|..+. ++|++|+|++|.+++..|..|.++++|++|+|++|+|+...+..|..+++|++|+|++|
T Consensus 22 ~~v~c~~~~l~-~ip~~~~--~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~N 98 (229)
T 3e6j_A 22 TTVDCRSKRHA-SVPAGIP--TNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLGTN 98 (229)
T ss_dssp TEEECTTSCCS-SCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred CEeEccCCCcC-ccCCCCC--CCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCCCCcChhhcccCCCcCEEECCCC
Confidence 44555555555 3443332 45555555555555444555555555555555555555333344455555555555555
Q ss_pred cCcccCChhhhccCCCCeEeccCCCCCCCCCccccCCCCccEEEcccCcccccCCcccccCCCCcceeecccccccccCC
Q 005045 93 NLRGSIPNELGQLSGLGFFTLYGNFISGIIPSSIYNISSIYYFSVTQNQLHGQLPTDVGLTLPNLKIFAGAVNYFTGSIP 172 (717)
Q Consensus 93 ~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~~l~~~~~~~l~~L~~L~l~~n~l~~~~~ 172 (717)
+|++..+..|..+++|++|+|++|+|+ .+|..+..+++|++|+|+ +|.++...+
T Consensus 99 ~l~~l~~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~L~-------------------------~N~l~~~~~ 152 (229)
T 3e6j_A 99 QLTVLPSAVFDRLVHLKELFMCCNKLT-ELPRGIERLTHLTHLALD-------------------------QNQLKSIPH 152 (229)
T ss_dssp CCCCCCTTTTTTCTTCCEEECCSSCCC-SCCTTGGGCTTCSEEECC-------------------------SSCCCCCCT
T ss_pred cCCccChhHhCcchhhCeEeccCCccc-ccCcccccCCCCCEEECC-------------------------CCcCCccCH
Confidence 555444444455555555555555554 334444444444444444 444444444
Q ss_pred ccCCCCCCCCEEeccCccccc
Q 005045 173 VSLSNASNLQVLDFAENGLTG 193 (717)
Q Consensus 173 ~~~~~l~~L~~L~l~~N~l~~ 193 (717)
..|..+++|+.|++++|.+.+
T Consensus 153 ~~~~~l~~L~~L~l~~N~~~c 173 (229)
T 3e6j_A 153 GAFDRLSSLTHAYLFGNPWDC 173 (229)
T ss_dssp TTTTTCTTCCEEECTTSCBCT
T ss_pred HHHhCCCCCCEEEeeCCCccC
Confidence 556667777777777777764
No 365
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=99.82 E-value=1.3e-20 Score=196.31 Aligned_cols=223 Identities=11% Similarity=0.008 Sum_probs=144.0
Q ss_pred cCCCCeEeccCCCCCCCCCccccCCCCccEEEcccCcccccCCcccccCCCCcceeecccccccccCCccCCCCCCCCEE
Q 005045 105 LSGLGFFTLYGNFISGIIPSSIYNISSIYYFSVTQNQLHGQLPTDVGLTLPNLKIFAGAVNYFTGSIPVSLSNASNLQVL 184 (717)
Q Consensus 105 l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~~l~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L 184 (717)
+++|+.|+|.+ .++.+...+|.++++|+.|++++|.+. .++. .+|.++.++..+
T Consensus 100 ~~~L~~l~L~~-~i~~I~~~aF~~~~~L~~l~l~~n~i~-~i~~------------------------~aF~~~~~l~~l 153 (329)
T 3sb4_A 100 KQTLEKVILSE-KIKNIEDAAFKGCDNLKICQIRKKTAP-NLLP------------------------EALADSVTAIFI 153 (329)
T ss_dssp CTTCCC-CBCT-TCCEECTTTTTTCTTCCEEEBCCSSCC-EECT------------------------TSSCTTTCEEEE
T ss_pred cCCCcEEECCc-cccchhHHHhhcCcccceEEcCCCCcc-ccch------------------------hhhcCCCceEEe
Confidence 55555555555 455444555555555555555555554 4444 444444444444
Q ss_pred eccCc----cccccCCCCccCCCCCC-eeeccccccCCcccCchhhhhhhccCCCCCEEEeecCcccCcCchhhhhcccc
Q 005045 185 DFAEN----GLTGTIPGNFGSLKDLV-RLNFDQNELGSREIGDLNFLKFLANCTSLEVLGLARNSFGGEMPISIANLSTH 259 (717)
Q Consensus 185 ~l~~N----~l~~~~~~~~~~l~~L~-~L~l~~N~l~~~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~~~~ 259 (717)
.+..+ .........|.++..|+ .+.+.... .++. .....-....++..+.+.++-.. .....+....++
T Consensus 154 ~~~~~~~~~~~~~i~~~~f~~~~~L~~~i~~~~~~--~l~~---~~~~~~~~~~~~~~l~~~~~l~~-~~~~~l~~~~~~ 227 (329)
T 3sb4_A 154 PLGSSDAYRFKNRWEHFAFIEGEPLETTIQVGAMG--KLED---EIMKAGLQPRDINFLTIEGKLDN-ADFKLIRDYMPN 227 (329)
T ss_dssp CTTCTHHHHTSTTTTTSCEEESCCCEEEEEECTTC--CHHH---HHHHTTCCGGGCSEEEEEECCCH-HHHHHHHHHCTT
T ss_pred cCcchhhhhccccccccccccccccceeEEecCCC--cHHH---HHhhcccCccccceEEEeeeecH-HHHHHHHHhcCC
Confidence 44432 12223344455555555 33333211 1110 00111123456777777766433 223333333368
Q ss_pred ccEEecCCCccCCCCCccccCCCCCCEEEccCCcCccccchhhhcCCCCC-eEEcccCcCCCCCCcccccccccceeecc
Q 005045 260 LRRLTMGENLMHGNIPVGIGNLVNLNLLGLEGNNLSGSVPEVIGRLNKLE-GLGLNVNKFSGLIPSSLGNLTILTRLWME 338 (717)
Q Consensus 260 L~~L~l~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~-~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~ 338 (717)
|+.|++++|.++.+...+|.++.+|+.|+|.+| ++.+.+.+|.++.+|+ .+++.+ .++.+.+.+|.++++|+.|+++
T Consensus 228 L~~l~L~~n~i~~I~~~aF~~~~~L~~l~l~~n-i~~I~~~aF~~~~~L~~~l~l~~-~l~~I~~~aF~~c~~L~~l~l~ 305 (329)
T 3sb4_A 228 LVSLDISKTNATTIPDFTFAQKKYLLKIKLPHN-LKTIGQRVFSNCGRLAGTLELPA-SVTAIEFGAFMGCDNLRYVLAT 305 (329)
T ss_dssp CCEEECTTBCCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEEEECT-TCCEECTTTTTTCTTEEEEEEC
T ss_pred CeEEECCCCCcceecHhhhhCCCCCCEEECCcc-cceehHHHhhCChhccEEEEEcc-cceEEchhhhhCCccCCEEEeC
Confidence 999999999998778888999999999999998 8777788899999999 999988 7888888999999999999999
Q ss_pred cccccccCCcCccCcCCCceEEe
Q 005045 339 ENRLEGSIPPSLGNCQKLLVLNL 361 (717)
Q Consensus 339 ~N~l~~~~p~~~~~l~~L~~L~l 361 (717)
+|.++...+.+|.++++|+.++.
T Consensus 306 ~n~i~~I~~~aF~~~~~L~~ly~ 328 (329)
T 3sb4_A 306 GDKITTLGDELFGNGVPSKLIYK 328 (329)
T ss_dssp SSCCCEECTTTTCTTCCCCEEEC
T ss_pred CCccCccchhhhcCCcchhhhcc
Confidence 99999777789999999998874
No 366
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.82 E-value=2e-19 Score=176.56 Aligned_cols=154 Identities=21% Similarity=0.224 Sum_probs=110.7
Q ss_pred CCEEEccCccccccCCccccCCCCCCEEeccCCcCcccCChhhhccCCCCeEeccCCCCCCCCCccccCCCCccEEEccc
Q 005045 60 LEIIGLGGSNLTGNVPAWIGNFSSLKALSLAWNNLRGSIPNELGQLSGLGFFTLYGNFISGIIPSSIYNISSIYYFSVTQ 139 (717)
Q Consensus 60 L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~ 139 (717)
-+.++++++.++ .+|..+. ++|++|+|++|+|++..|..|.++++|++|+|++|+|+.+.+..|.++++|++|+|++
T Consensus 21 ~~~v~c~~~~l~-~ip~~~~--~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~ 97 (229)
T 3e6j_A 21 GTTVDCRSKRHA-SVPAGIP--TNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLGT 97 (229)
T ss_dssp TTEEECTTSCCS-SCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred CCEeEccCCCcC-ccCCCCC--CCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCCCCcChhhcccCCCcCEEECCC
Confidence 455666666666 4554443 5666666666666655566666666666666666666655555666666666666666
Q ss_pred CcccccCCcccccCCCCcceeecccccccccCCccCCCCCCCCEEeccCccccccCCCCccCCCCCCeeeccccccCCc
Q 005045 140 NQLHGQLPTDVGLTLPNLKIFAGAVNYFTGSIPVSLSNASNLQVLDFAENGLTGTIPGNFGSLKDLVRLNFDQNELGSR 218 (717)
Q Consensus 140 N~l~~~l~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~ 218 (717)
|+|+ .++...|..+++|+.|++++|.++ .+|..+..+++|++|+|++|+|++..+..|..+++|+.|++++|.+...
T Consensus 98 N~l~-~l~~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~ 174 (229)
T 3e6j_A 98 NQLT-VLPSAVFDRLVHLKELFMCCNKLT-ELPRGIERLTHLTHLALDQNQLKSIPHGAFDRLSSLTHAYLFGNPWDCE 174 (229)
T ss_dssp SCCC-CCCTTTTTTCTTCCEEECCSSCCC-SCCTTGGGCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECTTSCBCTT
T ss_pred CcCC-ccChhHhCcchhhCeEeccCCccc-ccCcccccCCCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCCccCC
Confidence 6666 566665556666666666666666 5677788999999999999999977778899999999999999998753
No 367
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.80 E-value=6e-20 Score=184.27 Aligned_cols=170 Identities=24% Similarity=0.346 Sum_probs=81.8
Q ss_pred CCCCCEEeccCCcCcccCChhhhccCCCCeEeccCCCCCCCCCccccCCCCccEEEcccCcccccCCcccccCCCCccee
Q 005045 81 FSSLKALSLAWNNLRGSIPNELGQLSGLGFFTLYGNFISGIIPSSIYNISSIYYFSVTQNQLHGQLPTDVGLTLPNLKIF 160 (717)
Q Consensus 81 l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~~l~~~~~~~l~~L~~L 160 (717)
+.++..+++++|.+++. + .+..+++|++|++++|.|+.+ + .+..+++|++|+|++|+++ .++
T Consensus 18 l~~l~~l~l~~~~i~~~-~-~~~~l~~L~~L~l~~n~i~~l-~-~l~~l~~L~~L~L~~N~i~-~~~------------- 79 (263)
T 1xeu_A 18 LANAVKQNLGKQSVTDL-V-SQKELSGVQNFNGDNSNIQSL-A-GMQFFTNLKELHLSHNQIS-DLS------------- 79 (263)
T ss_dssp HHHHHHHHHTCSCTTSE-E-CHHHHTTCSEEECTTSCCCCC-T-TGGGCTTCCEEECCSSCCC-CCG-------------
T ss_pred HHHHHHHHhcCCCcccc-c-chhhcCcCcEEECcCCCcccc-h-HHhhCCCCCEEECCCCccC-CCh-------------
Confidence 34455555555555522 2 355555555555555555532 2 4555555555555555554 222
Q ss_pred ecccccccccCCccCCCCCCCCEEeccCccccccCCCCccCCCCCCeeeccccccCCcccCchhhhhhhccCCCCCEEEe
Q 005045 161 AGAVNYFTGSIPVSLSNASNLQVLDFAENGLTGTIPGNFGSLKDLVRLNFDQNELGSREIGDLNFLKFLANCTSLEVLGL 240 (717)
Q Consensus 161 ~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~l~~L~~L~L 240 (717)
+ +..+++|++|++++|++++ +|.. .. ++|+.|++++|+++.++ .+..+++|+.|+|
T Consensus 80 -----------~--l~~l~~L~~L~L~~N~l~~-l~~~-~~-~~L~~L~L~~N~l~~~~--------~l~~l~~L~~L~L 135 (263)
T 1xeu_A 80 -----------P--LKDLTKLEELSVNRNRLKN-LNGI-PS-ACLSRLFLDNNELRDTD--------SLIHLKNLEILSI 135 (263)
T ss_dssp -----------G--GTTCSSCCEEECCSSCCSC-CTTC-CC-SSCCEEECCSSCCSBSG--------GGTTCTTCCEEEC
T ss_pred -----------h--hccCCCCCEEECCCCccCC-cCcc-cc-CcccEEEccCCccCCCh--------hhcCcccccEEEC
Confidence 1 4455555555555555553 2221 11 44455555544444421 2344444444444
Q ss_pred ecCcccCcCchhhhhccccccEEecCCCccCCCCCccccCCCCCCEEEccCCcCccccchhhhcCCCCCeEEcccCcCCC
Q 005045 241 ARNSFGGEMPISIANLSTHLRRLTMGENLMHGNIPVGIGNLVNLNLLGLEGNNLSGSVPEVIGRLNKLEGLGLNVNKFSG 320 (717)
Q Consensus 241 ~~N~l~~~~p~~~~~~~~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~ 320 (717)
++|+++ .++ .+..+++|+.|+|++|++++. ..+..+++|+.|++++|++++
T Consensus 136 s~N~i~-~~~--------------------------~l~~l~~L~~L~L~~N~i~~~--~~l~~l~~L~~L~l~~N~~~~ 186 (263)
T 1xeu_A 136 RNNKLK-SIV--------------------------MLGFLSKLEVLDLHGNEITNT--GGLTRLKKVNWIDLTGQKCVN 186 (263)
T ss_dssp TTSCCC-BCG--------------------------GGGGCTTCCEEECTTSCCCBC--TTSTTCCCCCEEEEEEEEEEC
T ss_pred CCCcCC-CCh--------------------------HHccCCCCCEEECCCCcCcch--HHhccCCCCCEEeCCCCcccC
Confidence 444444 111 344445555555555555533 345555555555555555554
Q ss_pred C
Q 005045 321 L 321 (717)
Q Consensus 321 ~ 321 (717)
.
T Consensus 187 ~ 187 (263)
T 1xeu_A 187 E 187 (263)
T ss_dssp C
T ss_pred C
Confidence 4
No 368
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=99.79 E-value=2.4e-20 Score=194.12 Aligned_cols=286 Identities=11% Similarity=0.069 Sum_probs=191.2
Q ss_pred eecEEEcCCCcCcCCCCcCCcC-CCCCCEEECCCCccc--ccCCcCCCCCCCCCEEEccCccccccCCccccC-------
Q 005045 11 MTQDLNLTYNYLSGKIPTNLSH-CTELRSFEASVNDFV--GQIPNQLSSLTKLEIIGLGGSNLTGNVPAWIGN------- 80 (717)
Q Consensus 11 ~~~~L~L~~n~l~~~~~~~~~~-l~~L~~L~L~~n~l~--~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~------- 80 (717)
+++.|.++++--. ..-..+.. +++|+.|||++|++. ...+..+ +.++.+.+..|.| .+..|.+
T Consensus 26 ~l~~L~l~g~i~~-~~~~~l~~~l~~L~~LdLs~n~i~~~~~~~~~~---~~~~~~~~~~~~I---~~~aF~~~~~~~~~ 98 (329)
T 3sb4_A 26 SITHLTLTGKLNA-EDFRHLRDEFPSLKVLDISNAEIKMYSGKAGTY---PNGKFYIYMANFV---PAYAFSNVVNGVTK 98 (329)
T ss_dssp HCSEEEEEEEECH-HHHHHHHHSCTTCCEEEEEEEEECCEEESSSSS---GGGCCEEECTTEE---CTTTTEEEETTEEE
T ss_pred ceeEEEEeccccH-HHHHHHHHhhccCeEEecCcceeEEecCccccc---ccccccccccccc---CHHHhccccccccc
Confidence 5677777764211 11122233 777888888888877 3333222 3355666666643 3567778
Q ss_pred -CCCCCEEeccCCcCcccCChhhhccCCCCeEeccCCCCCCCCCccccCCCCccEEEcccCccc---ccCCcccccCCCC
Q 005045 81 -FSSLKALSLAWNNLRGSIPNELGQLSGLGFFTLYGNFISGIIPSSIYNISSIYYFSVTQNQLH---GQLPTDVGLTLPN 156 (717)
Q Consensus 81 -l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~---~~l~~~~~~~l~~ 156 (717)
+++|+.|+|.+ .++.+.+.+|.++++|+.|+|++|.+..+.+.+|.++.++..+.+..+... ..+....|..
T Consensus 99 g~~~L~~l~L~~-~i~~I~~~aF~~~~~L~~l~l~~n~i~~i~~~aF~~~~~l~~l~~~~~~~~~~~~~i~~~~f~~--- 174 (329)
T 3sb4_A 99 GKQTLEKVILSE-KIKNIEDAAFKGCDNLKICQIRKKTAPNLLPEALADSVTAIFIPLGSSDAYRFKNRWEHFAFIE--- 174 (329)
T ss_dssp ECTTCCC-CBCT-TCCEECTTTTTTCTTCCEEEBCCSSCCEECTTSSCTTTCEEEECTTCTHHHHTSTTTTTSCEEE---
T ss_pred ccCCCcEEECCc-cccchhHHHhhcCcccceEEcCCCCccccchhhhcCCCceEEecCcchhhhhcccccccccccc---
Confidence 99999999999 899788889999999999999999999899999999888888877664321 1223333333
Q ss_pred cceeecccccccccCCccCCCCCCCC-EEeccCcc-ccccCCCCccCCCCCCeeeccccccCCcccCchhhhhhhccCCC
Q 005045 157 LKIFAGAVNYFTGSIPVSLSNASNLQ-VLDFAENG-LTGTIPGNFGSLKDLVRLNFDQNELGSREIGDLNFLKFLANCTS 234 (717)
Q Consensus 157 L~~L~l~~n~l~~~~~~~~~~l~~L~-~L~l~~N~-l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~l~~ 234 (717)
+..|+ .+.+.... +.......-....++..+.+.++- .... +......+++
T Consensus 175 ---------------------~~~L~~~i~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~l-~~~~-----~~~l~~~~~~ 227 (329)
T 3sb4_A 175 ---------------------GEPLETTIQVGAMGKLEDEIMKAGLQPRDINFLTIEGKL-DNAD-----FKLIRDYMPN 227 (329)
T ss_dssp ---------------------SCCCEEEEEECTTCCHHHHHHHTTCCGGGCSEEEEEECC-CHHH-----HHHHHHHCTT
T ss_pred ---------------------ccccceeEEecCCCcHHHHHhhcccCccccceEEEeeee-cHHH-----HHHHHHhcCC
Confidence 33333 22222211 110000111123455555555442 1111 1122234778
Q ss_pred CCEEEeecCcccCcCchhhhhccccccEEecCCCccCCCCCccccCCCCCC-EEEccCCcCccccchhhhcCCCCCeEEc
Q 005045 235 LEVLGLARNSFGGEMPISIANLSTHLRRLTMGENLMHGNIPVGIGNLVNLN-LLGLEGNNLSGSVPEVIGRLNKLEGLGL 313 (717)
Q Consensus 235 L~~L~L~~N~l~~~~p~~~~~~~~~L~~L~l~~N~l~~~~~~~~~~l~~L~-~L~L~~N~l~~~~~~~~~~l~~L~~L~L 313 (717)
|+.|+|++|+++ .+|...+...++|+.|++++| ++.+...+|.++.+|+ .+++.+ .++.+.+.+|.++++|+.|++
T Consensus 228 L~~l~L~~n~i~-~I~~~aF~~~~~L~~l~l~~n-i~~I~~~aF~~~~~L~~~l~l~~-~l~~I~~~aF~~c~~L~~l~l 304 (329)
T 3sb4_A 228 LVSLDISKTNAT-TIPDFTFAQKKYLLKIKLPHN-LKTIGQRVFSNCGRLAGTLELPA-SVTAIEFGAFMGCDNLRYVLA 304 (329)
T ss_dssp CCEEECTTBCCC-EECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEEEECT-TCCEECTTTTTTCTTEEEEEE
T ss_pred CeEEECCCCCcc-eecHhhhhCCCCCCEEECCcc-cceehHHHhhCChhccEEEEEcc-cceEEchhhhhCCccCCEEEe
Confidence 888888888888 555443333358888888887 7667788899999999 999988 777677889999999999999
Q ss_pred ccCcCCCCCCcccccccccceeec
Q 005045 314 NVNKFSGLIPSSLGNLTILTRLWM 337 (717)
Q Consensus 314 s~N~l~~~~~~~~~~l~~L~~L~L 337 (717)
++|.++.+.+.+|.++++|+.|+.
T Consensus 305 ~~n~i~~I~~~aF~~~~~L~~ly~ 328 (329)
T 3sb4_A 305 TGDKITTLGDELFGNGVPSKLIYK 328 (329)
T ss_dssp CSSCCCEECTTTTCTTCCCCEEEC
T ss_pred CCCccCccchhhhcCCcchhhhcc
Confidence 999999888889999999998874
No 369
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.79 E-value=1.1e-19 Score=174.18 Aligned_cols=153 Identities=13% Similarity=0.197 Sum_probs=85.3
Q ss_pred cCCCCCCEEECCCCcccccCCcCCCCCCCCCEEEccCccccccCCccccCCCCCCEEeccCCcCcccCChhhhccCCCCe
Q 005045 31 SHCTELRSFEASVNDFVGQIPNQLSSLTKLEIIGLGGSNLTGNVPAWIGNFSSLKALSLAWNNLRGSIPNELGQLSGLGF 110 (717)
Q Consensus 31 ~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~ 110 (717)
..+++|++|++++|.++ .+| .+..+++|++|++++|.++ .++ .+..+++|++|+|++|++++..+..|..+++|++
T Consensus 41 ~~l~~L~~L~l~~n~i~-~l~-~l~~l~~L~~L~l~~n~~~-~~~-~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~ 116 (197)
T 4ezg_A 41 AQMNSLTYITLANINVT-DLT-GIEYAHNIKDLTINNIHAT-NYN-PISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTL 116 (197)
T ss_dssp HHHHTCCEEEEESSCCS-CCT-TGGGCTTCSEEEEESCCCS-CCG-GGTTCTTCCEEEEECTTCBGGGSCCCTTCTTCCE
T ss_pred hhcCCccEEeccCCCcc-ChH-HHhcCCCCCEEEccCCCCC-cch-hhhcCCCCCEEEeECCccCcccChhhcCCCCCCE
Confidence 45556666666666665 444 3556666666666666554 222 4555666666666666666555555666666666
Q ss_pred EeccCCCCCCCCCccccCCCCccEEEcccCc-ccccCCcccccCCCCcceeecccccccccCCccCCCCCCCCEEeccCc
Q 005045 111 FTLYGNFISGIIPSSIYNISSIYYFSVTQNQ-LHGQLPTDVGLTLPNLKIFAGAVNYFTGSIPVSLSNASNLQVLDFAEN 189 (717)
Q Consensus 111 L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~-l~~~l~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N 189 (717)
|+|++|.+++..+..|..+++|++|+|++|. ++ .+| .+..+++|++|++++|
T Consensus 117 L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~~i~-~~~--------------------------~l~~l~~L~~L~l~~n 169 (197)
T 4ezg_A 117 LDISHSAHDDSILTKINTLPKVNSIDLSYNGAIT-DIM--------------------------PLKTLPELKSLNIQFD 169 (197)
T ss_dssp EECCSSBCBGGGHHHHTTCSSCCEEECCSCTBCC-CCG--------------------------GGGGCSSCCEEECTTB
T ss_pred EEecCCccCcHhHHHHhhCCCCCEEEccCCCCcc-ccH--------------------------hhcCCCCCCEEECCCC
Confidence 6666666665555556666666666666665 43 333 3444555555555555
Q ss_pred cccccCCCCccCCCCCCeeeccccccC
Q 005045 190 GLTGTIPGNFGSLKDLVRLNFDQNELG 216 (717)
Q Consensus 190 ~l~~~~~~~~~~l~~L~~L~l~~N~l~ 216 (717)
.+++ ++ .+..+++|+.|++++|+|.
T Consensus 170 ~i~~-~~-~l~~l~~L~~L~l~~N~i~ 194 (197)
T 4ezg_A 170 GVHD-YR-GIEDFPKLNQLYAFSQTIG 194 (197)
T ss_dssp CCCC-CT-TGGGCSSCCEEEECBC---
T ss_pred CCcC-hH-HhccCCCCCEEEeeCcccC
Confidence 5552 22 4555555555555555544
No 370
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.79 E-value=1.1e-21 Score=217.87 Aligned_cols=203 Identities=19% Similarity=0.151 Sum_probs=117.4
Q ss_pred cCCCCCCEEeccCCcCcccCChhhhccCCCCeEeccCCC-------------CCCCCCccccCCCCccEEE-cccCcccc
Q 005045 79 GNFSSLKALSLAWNNLRGSIPNELGQLSGLGFFTLYGNF-------------ISGIIPSSIYNISSIYYFS-VTQNQLHG 144 (717)
Q Consensus 79 ~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~-------------i~~~~~~~~~~l~~L~~L~-L~~N~l~~ 144 (717)
..+++|+.|+|++|+|+ .+|..++.+++|+.|++++|. +.+..|..+.++++|+.|+ ++.|.+.
T Consensus 346 ~~~~~L~~L~Ls~n~L~-~Lp~~i~~l~~L~~L~l~~n~~l~~l~~ll~~~~~~~~~~~~l~~l~~L~~L~~l~~n~~~- 423 (567)
T 1dce_A 346 ATDEQLFRCELSVEKST-VLQSELESCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRAAYLD- 423 (567)
T ss_dssp STTTTSSSCCCCHHHHH-HHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCTGGGHHHHHHHHHHHHHHCGGGHHHHH-
T ss_pred ccCccceeccCChhhHH-hhHHHHHHHHHHHHhccccchhhhhHHHHHHhcccccCCHHHHHHHHhcccCcchhhcccc-
Confidence 56778888888888887 778888888888888887664 4445566666666666666 5555443
Q ss_pred cCCcccccCCCCcceeecccccccccCCccCCCCCCCCEEeccCccccccCCCCccCCCCCCeeeccccccCCcccCchh
Q 005045 145 QLPTDVGLTLPNLKIFAGAVNYFTGSIPVSLSNASNLQVLDFAENGLTGTIPGNFGSLKDLVRLNFDQNELGSREIGDLN 224 (717)
Q Consensus 145 ~l~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~ 224 (717)
+|..+.+++|.+....+ ..|+.|+|++|.|++ +|. |+.+++|+.|+|++|.|+
T Consensus 424 -----------~L~~l~l~~n~i~~l~~------~~L~~L~Ls~n~l~~-lp~-~~~l~~L~~L~Ls~N~l~-------- 476 (567)
T 1dce_A 424 -----------DLRSKFLLENSVLKMEY------ADVRVLHLAHKDLTV-LCH-LEQLLLVTHLDLSHNRLR-------- 476 (567)
T ss_dssp -----------HHHHHHHHHHHHHHHHH------TTCSEEECTTSCCSS-CCC-GGGGTTCCEEECCSSCCC--------
T ss_pred -----------hhhhhhhhcccccccCc------cCceEEEecCCCCCC-CcC-ccccccCcEeecCccccc--------
Confidence 23444555555553322 135666666666663 343 555555555555555554
Q ss_pred hhhhhccCCCCCEEEeecCcccCcCchhhhhccccccEEecCCCccCCCCCccccCCCCCCEEEccCCcCcccc-chhhh
Q 005045 225 FLKFLANCTSLEVLGLARNSFGGEMPISIANLSTHLRRLTMGENLMHGNIPVGIGNLVNLNLLGLEGNNLSGSV-PEVIG 303 (717)
Q Consensus 225 ~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~~~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~-~~~~~ 303 (717)
.+|..+..+ ++|+.|+|++|.|++ +| .|.++++|+.|+|++|+|++.. |..++
T Consensus 477 -----------------------~lp~~~~~l-~~L~~L~Ls~N~l~~-lp-~l~~l~~L~~L~Ls~N~l~~~~~p~~l~ 530 (567)
T 1dce_A 477 -----------------------ALPPALAAL-RCLEVLQASDNALEN-VD-GVANLPRLQELLLCNNRLQQSAAIQPLV 530 (567)
T ss_dssp -----------------------CCCGGGGGC-TTCCEEECCSSCCCC-CG-GGTTCSSCCEEECCSSCCCSSSTTGGGG
T ss_pred -----------------------ccchhhhcC-CCCCEEECCCCCCCC-Cc-ccCCCCCCcEEECCCCCCCCCCCcHHHh
Confidence 444444444 245555555555543 33 4555566666666666666444 55666
Q ss_pred cCCCCCeEEcccCcCCCCCCcc---cccccccceee
Q 005045 304 RLNKLEGLGLNVNKFSGLIPSS---LGNLTILTRLW 336 (717)
Q Consensus 304 ~l~~L~~L~Ls~N~l~~~~~~~---~~~l~~L~~L~ 336 (717)
.+++|+.|+|++|++++.+|.. +..+++|+.|+
T Consensus 531 ~l~~L~~L~L~~N~l~~~~~~~~~l~~~lp~L~~L~ 566 (567)
T 1dce_A 531 SCPRLVLLNLQGNSLCQEEGIQERLAEMLPSVSSIL 566 (567)
T ss_dssp GCTTCCEEECTTSGGGGSSSCTTHHHHHCTTCSEEE
T ss_pred cCCCCCEEEecCCcCCCCccHHHHHHHHCcccCccC
Confidence 6666666666666666543321 22355666654
No 371
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.79 E-value=9.8e-20 Score=182.70 Aligned_cols=167 Identities=14% Similarity=0.229 Sum_probs=117.3
Q ss_pred eecEEEcCCCcCcCCCCcCCcCCCCCCEEECCCCcccccCCcCCCCCCCCCEEEccCccccccCCccccCCCCCCEEecc
Q 005045 11 MTQDLNLTYNYLSGKIPTNLSHCTELRSFEASVNDFVGQIPNQLSSLTKLEIIGLGGSNLTGNVPAWIGNFSSLKALSLA 90 (717)
Q Consensus 11 ~~~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~ 90 (717)
.+..+++++|.+++. + .+..+++|++|++++|.++ .+| .+..+++|++|+|++|+|++ ++. +..+++|++|+|+
T Consensus 20 ~l~~l~l~~~~i~~~-~-~~~~l~~L~~L~l~~n~i~-~l~-~l~~l~~L~~L~L~~N~i~~-~~~-l~~l~~L~~L~L~ 93 (263)
T 1xeu_A 20 NAVKQNLGKQSVTDL-V-SQKELSGVQNFNGDNSNIQ-SLA-GMQFFTNLKELHLSHNQISD-LSP-LKDLTKLEELSVN 93 (263)
T ss_dssp HHHHHHHTCSCTTSE-E-CHHHHTTCSEEECTTSCCC-CCT-TGGGCTTCCEEECCSSCCCC-CGG-GTTCSSCCEEECC
T ss_pred HHHHHHhcCCCcccc-c-chhhcCcCcEEECcCCCcc-cch-HHhhCCCCCEEECCCCccCC-Chh-hccCCCCCEEECC
Confidence 556677888888743 3 5777888888888888887 455 57778888888888888884 333 7788888888888
Q ss_pred CCcCcccCChhhhccCCCCeEeccCCCCCCCCCccccCCCCccEEEcccCcccccCCcccccCCCCcceeeccccccccc
Q 005045 91 WNNLRGSIPNELGQLSGLGFFTLYGNFISGIIPSSIYNISSIYYFSVTQNQLHGQLPTDVGLTLPNLKIFAGAVNYFTGS 170 (717)
Q Consensus 91 ~n~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~~l~~~~~~~l~~L~~L~l~~n~l~~~ 170 (717)
+|++++ +|. +.. ++|++|+|++|++++. +.+..+++|+.|+|++|+++ .++ .+..+++|+.|++++|.+++.
T Consensus 94 ~N~l~~-l~~-~~~-~~L~~L~L~~N~l~~~--~~l~~l~~L~~L~Ls~N~i~-~~~--~l~~l~~L~~L~L~~N~i~~~ 165 (263)
T 1xeu_A 94 RNRLKN-LNG-IPS-ACLSRLFLDNNELRDT--DSLIHLKNLEILSIRNNKLK-SIV--MLGFLSKLEVLDLHGNEITNT 165 (263)
T ss_dssp SSCCSC-CTT-CCC-SSCCEEECCSSCCSBS--GGGTTCTTCCEEECTTSCCC-BCG--GGGGCTTCCEEECTTSCCCBC
T ss_pred CCccCC-cCc-ccc-CcccEEEccCCccCCC--hhhcCcccccEEECCCCcCC-CCh--HHccCCCCCEEECCCCcCcch
Confidence 888874 333 222 7788888888888753 35777888888888888877 444 234566666777776666654
Q ss_pred CCccCCCCCCCCEEeccCccccc
Q 005045 171 IPVSLSNASNLQVLDFAENGLTG 193 (717)
Q Consensus 171 ~~~~~~~l~~L~~L~l~~N~l~~ 193 (717)
..+..+++|+.|++++|.++.
T Consensus 166 --~~l~~l~~L~~L~l~~N~~~~ 186 (263)
T 1xeu_A 166 --GGLTRLKKVNWIDLTGQKCVN 186 (263)
T ss_dssp --TTSTTCCCCCEEEEEEEEEEC
T ss_pred --HHhccCCCCCEEeCCCCcccC
Confidence 456666666666666666663
No 372
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.78 E-value=7.5e-20 Score=209.70 Aligned_cols=224 Identities=19% Similarity=0.168 Sum_probs=112.9
Q ss_pred CCCCEEEccCccccccCCccccCCCCCCEEeccCCcCcccCChhhhccCCCCeEeccCCCCCCCCCccccCCCCccEEEc
Q 005045 58 TKLEIIGLGGSNLTGNVPAWIGNFSSLKALSLAWNNLRGSIPNELGQLSGLGFFTLYGNFISGIIPSSIYNISSIYYFSV 137 (717)
Q Consensus 58 ~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L 137 (717)
+.++.|+|.+|.+.. .+. ..|+.++|+.|.|. .++++.|.+. ..++.|..+++|+.|+|
T Consensus 173 ~~~~~l~L~~n~~~~-~~~-----~~l~~l~Ls~~~i~--------------~~~~~~n~~~-~~~~~~~~l~~L~~L~L 231 (727)
T 4b8c_D 173 PLTPKIELFANGKDE-ANQ-----ALLQHKKLSQYSID--------------EDDDIENRMV-MPKDSKYDDQLWHALDL 231 (727)
T ss_dssp ----------------------------------------------------------------------CCCCCCEEEC
T ss_pred CccceEEeeCCCCCc-chh-----hHhhcCccCccccc--------------Ccccccccee-cChhhhccCCCCcEEEC
Confidence 345566666666652 222 22444555555444 2244455555 56777778888888888
Q ss_pred ccCcccccCCcccccCCCCcceeecccccccccCCccCCCCCCCCEEeccCccccccCCCCccCCCCCCeeeccccccCC
Q 005045 138 TQNQLHGQLPTDVGLTLPNLKIFAGAVNYFTGSIPVSLSNASNLQVLDFAENGLTGTIPGNFGSLKDLVRLNFDQNELGS 217 (717)
Q Consensus 138 ~~N~l~~~l~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~ 217 (717)
++|.+. .+|..++ .+++|++|+|++|.|+ .+|..|.++++|++|+|++|.|+ .+|..|+.+++|+.|+|++|.|+.
T Consensus 232 s~n~l~-~l~~~~~-~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~L~~N~l~~ 307 (727)
T 4b8c_D 232 SNLQIF-NISANIF-KYDFLTRLYLNGNSLT-ELPAEIKNLSNLRVLDLSHNRLT-SLPAELGSCFQLKYFYFFDNMVTT 307 (727)
T ss_dssp TTSCCS-CCCGGGG-GCCSCSCCBCTTSCCS-CCCGGGGGGTTCCEEECTTSCCS-SCCSSGGGGTTCSEEECCSSCCCC
T ss_pred CCCCCC-CCChhhc-CCCCCCEEEeeCCcCc-ccChhhhCCCCCCEEeCcCCcCC-ccChhhcCCCCCCEEECCCCCCCc
Confidence 888887 7777777 7788888888888887 67778888888899999998888 678888888889999999888886
Q ss_pred cccCchhhhhhhccCCCCCEEEeecCcccCcCchhhhhccccccEEecCCCccCCCCCccccCCCCCCEEEccCC-----
Q 005045 218 REIGDLNFLKFLANCTSLEVLGLARNSFGGEMPISIANLSTHLRRLTMGENLMHGNIPVGIGNLVNLNLLGLEGN----- 292 (717)
Q Consensus 218 ~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~~~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~L~~N----- 292 (717)
++ ..|.++++|+.|+|++|.|++.+|..+......+..|+|++|.+++.+|. .|+.|++++|
T Consensus 308 lp-------~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~~~~~~~l~l~~N~l~~~~p~------~l~~l~l~~n~~~~~ 374 (727)
T 4b8c_D 308 LP-------WEFGNLCNLQFLGVEGNPLEKQFLKILTEKSVTGLIFYLRDNRPEIPLPH------ERRFIEINTDGEPQR 374 (727)
T ss_dssp CC-------SSTTSCTTCCCEECTTSCCCSHHHHHHHHHHHHHHHHHHHHCCCCCCCCC------C--------------
T ss_pred cC-------hhhhcCCCccEEeCCCCccCCCChHHHhhcchhhhHHhhccCcccCcCcc------ccceeEeeccccccc
Confidence 64 45888889999999999999888887766533445578888888876665 4556667766
Q ss_pred ---cCccccchhhhcCCCCCeEEcccCcCC
Q 005045 293 ---NLSGSVPEVIGRLNKLEGLGLNVNKFS 319 (717)
Q Consensus 293 ---~l~~~~~~~~~~l~~L~~L~Ls~N~l~ 319 (717)
.+.+..+..+..+.++....++.|.+.
T Consensus 375 ~~~~l~~~~~~~~~~l~~~~~~~ls~Nil~ 404 (727)
T 4b8c_D 375 EYDSLQQSTEHLATDLAKRTFTVLSYNTLC 404 (727)
T ss_dssp ---------------------------CCC
T ss_pred ccCCccccccchhhcccccceeeeeccccc
Confidence 222223333344444444555555543
No 373
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.78 E-value=1.6e-21 Score=216.58 Aligned_cols=122 Identities=20% Similarity=0.193 Sum_probs=82.3
Q ss_pred CCCEEEeecCcccCcCchhhhhccccccEEecCCCccCCCCCccccCCCCCCEEEccCCcCccccchhhhcCCCCCeEEc
Q 005045 234 SLEVLGLARNSFGGEMPISIANLSTHLRRLTMGENLMHGNIPVGIGNLVNLNLLGLEGNNLSGSVPEVIGRLNKLEGLGL 313 (717)
Q Consensus 234 ~L~~L~L~~N~l~~~~p~~~~~~~~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L 313 (717)
.|+.|+|++|.|+ .+|. +..+ ++|+.|+|++|.|+ .+|..|+++++|+.|+|++|+|++ +| .++.+++|+.|+|
T Consensus 442 ~L~~L~Ls~n~l~-~lp~-~~~l-~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~~-lp-~l~~l~~L~~L~L 515 (567)
T 1dce_A 442 DVRVLHLAHKDLT-VLCH-LEQL-LLVTHLDLSHNRLR-ALPPALAALRCLEVLQASDNALEN-VD-GVANLPRLQELLL 515 (567)
T ss_dssp TCSEEECTTSCCS-SCCC-GGGG-TTCCEEECCSSCCC-CCCGGGGGCTTCCEEECCSSCCCC-CG-GGTTCSSCCEEEC
T ss_pred CceEEEecCCCCC-CCcC-cccc-ccCcEeecCccccc-ccchhhhcCCCCCEEECCCCCCCC-Cc-ccCCCCCCcEEEC
Confidence 4677777777777 4564 5555 47777777777777 566677777777777777777774 55 6777777777777
Q ss_pred ccCcCCCCC-CcccccccccceeecccccccccCCcC---ccCcCCCceEEe
Q 005045 314 NVNKFSGLI-PSSLGNLTILTRLWMEENRLEGSIPPS---LGNCQKLLVLNL 361 (717)
Q Consensus 314 s~N~l~~~~-~~~~~~l~~L~~L~L~~N~l~~~~p~~---~~~l~~L~~L~l 361 (717)
++|++++.. |..|+.+++|+.|+|++|++++..|.. +..+++|+.|++
T Consensus 516 s~N~l~~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~~~l~~~lp~L~~L~l 567 (567)
T 1dce_A 516 CNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQERLAEMLPSVSSILT 567 (567)
T ss_dssp CSSCCCSSSTTGGGGGCTTCCEEECTTSGGGGSSSCTTHHHHHCTTCSEEEC
T ss_pred CCCCCCCCCCcHHHhcCCCCCEEEecCCcCCCCccHHHHHHHHCcccCccCC
Confidence 777777665 677777777777777777777443321 233667776653
No 374
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.78 E-value=7.1e-19 Score=168.42 Aligned_cols=149 Identities=14% Similarity=0.194 Sum_probs=125.5
Q ss_pred eecEEEcCCCcCcCCCCcCCcCCCCCCEEECCCCcccccCCcCCCCCCCCCEEEccCccccccCCccccCCCCCCEEecc
Q 005045 11 MTQDLNLTYNYLSGKIPTNLSHCTELRSFEASVNDFVGQIPNQLSSLTKLEIIGLGGSNLTGNVPAWIGNFSSLKALSLA 90 (717)
Q Consensus 11 ~~~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~ 90 (717)
.+++|++++|+++ .+| .+..+++|++|++++|.++ .+ ..+..+++|++|++++|.+++..|..++.+++|++|+|+
T Consensus 45 ~L~~L~l~~n~i~-~l~-~l~~l~~L~~L~l~~n~~~-~~-~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~Ls 120 (197)
T 4ezg_A 45 SLTYITLANINVT-DLT-GIEYAHNIKDLTINNIHAT-NY-NPISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLDIS 120 (197)
T ss_dssp TCCEEEEESSCCS-CCT-TGGGCTTCSEEEEESCCCS-CC-GGGTTCTTCCEEEEECTTCBGGGSCCCTTCTTCCEEECC
T ss_pred CccEEeccCCCcc-ChH-HHhcCCCCCEEEccCCCCC-cc-hhhhcCCCCCEEEeECCccCcccChhhcCCCCCCEEEec
Confidence 7899999999999 566 6999999999999999776 33 469999999999999999998788999999999999999
Q ss_pred CCcCcccCChhhhccCCCCeEeccCCC-CCCCCCccccCCCCccEEEcccCcccccCCcccccCCCCcceeeccccccc
Q 005045 91 WNNLRGSIPNELGQLSGLGFFTLYGNF-ISGIIPSSIYNISSIYYFSVTQNQLHGQLPTDVGLTLPNLKIFAGAVNYFT 168 (717)
Q Consensus 91 ~n~l~~~~~~~~~~l~~L~~L~L~~N~-i~~~~~~~~~~l~~L~~L~L~~N~l~~~l~~~~~~~l~~L~~L~l~~n~l~ 168 (717)
+|++++..+..|..+++|++|+|++|. ++. .+ .+..+++|++|++++|.++ .++ .+..+++|+.|++++|++.
T Consensus 121 ~n~i~~~~~~~l~~l~~L~~L~L~~n~~i~~-~~-~l~~l~~L~~L~l~~n~i~-~~~--~l~~l~~L~~L~l~~N~i~ 194 (197)
T 4ezg_A 121 HSAHDDSILTKINTLPKVNSIDLSYNGAITD-IM-PLKTLPELKSLNIQFDGVH-DYR--GIEDFPKLNQLYAFSQTIG 194 (197)
T ss_dssp SSBCBGGGHHHHTTCSSCCEEECCSCTBCCC-CG-GGGGCSSCCEEECTTBCCC-CCT--TGGGCSSCCEEEECBC---
T ss_pred CCccCcHhHHHHhhCCCCCEEEccCCCCccc-cH-hhcCCCCCCEEECCCCCCc-ChH--HhccCCCCCEEEeeCcccC
Confidence 999998888999999999999999998 774 44 7999999999999999998 444 2334555555555555543
No 375
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=99.77 E-value=1.8e-17 Score=176.04 Aligned_cols=270 Identities=11% Similarity=0.108 Sum_probs=149.4
Q ss_pred CCCCEEEccCccccccCCccccCCCCCCEEeccCCcCcccCChhhhccCCCCeEeccCCCCCCCCCccccCCCCccEEEc
Q 005045 58 TKLEIIGLGGSNLTGNVPAWIGNFSSLKALSLAWNNLRGSIPNELGQLSGLGFFTLYGNFISGIIPSSIYNISSIYYFSV 137 (717)
Q Consensus 58 ~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L 137 (717)
..++.+.+.+ .++.+...+|.+. +|+.++|..| ++.+...+|.+ .+|+.+.|.. .++.+...+|.++++|+.++|
T Consensus 113 ~~l~~i~ip~-~i~~I~~~aF~~~-~L~~i~l~~~-i~~I~~~aF~~-~~L~~i~lp~-~l~~I~~~aF~~c~~L~~l~l 187 (401)
T 4fdw_A 113 KGYNEIILPN-SVKSIPKDAFRNS-QIAKVVLNEG-LKSIGDMAFFN-STVQEIVFPS-TLEQLKEDIFYYCYNLKKADL 187 (401)
T ss_dssp SSCSEEECCT-TCCEECTTTTTTC-CCSEEECCTT-CCEECTTTTTT-CCCCEEECCT-TCCEECSSTTTTCTTCCEEEC
T ss_pred CCccEEEECC-ccCEehHhhcccC-CccEEEeCCC-ccEECHHhcCC-CCceEEEeCC-CccEehHHHhhCcccCCeeec
Confidence 3444444433 2332333444442 4555555443 44344444444 2455555543 344444445555555555555
Q ss_pred ccCcccccCCcccccCCCCcceeecccccccccCCccCCCCCCCCEEeccCccccccCCCCccCCCCCCeeeccccccCC
Q 005045 138 TQNQLHGQLPTDVGLTLPNLKIFAGAVNYFTGSIPVSLSNASNLQVLDFAENGLTGTIPGNFGSLKDLVRLNFDQNELGS 217 (717)
Q Consensus 138 ~~N~l~~~l~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~ 217 (717)
++|+++ .++...|. ..+|+.+.+..+ +..+...+|.++++|+.+++..| ++.+...+|.+ .+|+.+.+ .+.++.
T Consensus 188 ~~n~l~-~I~~~aF~-~~~L~~l~lp~~-l~~I~~~aF~~~~~L~~l~l~~~-l~~I~~~aF~~-~~L~~i~l-p~~i~~ 261 (401)
T 4fdw_A 188 SKTKIT-KLPASTFV-YAGIEEVLLPVT-LKEIGSQAFLKTSQLKTIEIPEN-VSTIGQEAFRE-SGITTVKL-PNGVTN 261 (401)
T ss_dssp TTSCCS-EECTTTTT-TCCCSEEECCTT-CCEECTTTTTTCTTCCCEECCTT-CCEECTTTTTT-CCCSEEEE-ETTCCE
T ss_pred CCCcce-EechhhEe-ecccCEEEeCCc-hheehhhHhhCCCCCCEEecCCC-ccCcccccccc-CCccEEEe-CCCccE
Confidence 555554 44444443 344444444422 33344444444444555444443 33233344444 44444444 233333
Q ss_pred cccCchhhhhhhccCCCCCEEEeecCcccCcCchhhhhccccccEEecCCCccCCCCCccccCCCCCCEEEccCCcCccc
Q 005045 218 REIGDLNFLKFLANCTSLEVLGLARNSFGGEMPISIANLSTHLRRLTMGENLMHGNIPVGIGNLVNLNLLGLEGNNLSGS 297 (717)
Q Consensus 218 ~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~~~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~ 297 (717)
++ ...|.++++|+.+++.+|.+. .+.+..+...+|.++++|+.++|. +.++.+
T Consensus 262 I~------~~aF~~c~~L~~l~l~~~~~~--------------------~~~~~~I~~~aF~~c~~L~~l~l~-~~i~~I 314 (401)
T 4fdw_A 262 IA------SRAFYYCPELAEVTTYGSTFN--------------------DDPEAMIHPYCLEGCPKLARFEIP-ESIRIL 314 (401)
T ss_dssp EC------TTTTTTCTTCCEEEEESSCCC--------------------CCTTCEECTTTTTTCTTCCEECCC-TTCCEE
T ss_pred EC------hhHhhCCCCCCEEEeCCcccc--------------------CCcccEECHHHhhCCccCCeEEeC-CceEEE
Confidence 33 333444444444444444332 011113566778888899999988 457767
Q ss_pred cchhhhcCCCCCeEEcccCcCCCCCCcccccccccceeecccccccccCCcCccCcC-CCceEEeecccCC
Q 005045 298 VPEVIGRLNKLEGLGLNVNKFSGLIPSSLGNLTILTRLWMEENRLEGSIPPSLGNCQ-KLLVLNLSSNDLN 367 (717)
Q Consensus 298 ~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~-~L~~L~l~~N~l~ 367 (717)
...+|.++.+|+.+.|..| ++.+...+|.++ +|+.|++++|.+....+..|..++ +++.|++..|.+.
T Consensus 315 ~~~aF~~c~~L~~l~lp~~-l~~I~~~aF~~~-~L~~l~l~~n~~~~l~~~~F~~~~~~l~~l~vp~~~~~ 383 (401)
T 4fdw_A 315 GQGLLGGNRKVTQLTIPAN-VTQINFSAFNNT-GIKEVKVEGTTPPQVFEKVWYGFPDDITVIRVPAESVE 383 (401)
T ss_dssp CTTTTTTCCSCCEEEECTT-CCEECTTSSSSS-CCCEEEECCSSCCBCCCSSCCCSCTTCCEEEECGGGHH
T ss_pred hhhhhcCCCCccEEEECcc-ccEEcHHhCCCC-CCCEEEEcCCCCcccccccccCCCCCccEEEeCHHHHH
Confidence 7778888899999999655 777778888888 899999999988866667787775 6788888776653
No 376
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.76 E-value=1.4e-18 Score=165.40 Aligned_cols=134 Identities=20% Similarity=0.242 Sum_probs=119.1
Q ss_pred eecEEEcCCCcCcCCCCcCCcCCCCCCEEECCCCcccccCCc-CCCCCCCCCEEEccCccccccCCccccCCCCCCEEec
Q 005045 11 MTQDLNLTYNYLSGKIPTNLSHCTELRSFEASVNDFVGQIPN-QLSSLTKLEIIGLGGSNLTGNVPAWIGNFSSLKALSL 89 (717)
Q Consensus 11 ~~~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~-~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L 89 (717)
.-+++++++|+++ .+|..+.. +|++|+|++|.+++..+. .|..+++|++|+|++|.|++..|..|..+++|++|+|
T Consensus 9 ~~~~l~~s~~~l~-~ip~~~~~--~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L 85 (192)
T 1w8a_A 9 EGTTVDCTGRGLK-EIPRDIPL--HTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQL 85 (192)
T ss_dssp ETTEEECTTSCCS-SCCSCCCT--TCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEEC
T ss_pred CCCEEEcCCCCcC-cCccCCCC--CCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEEC
Confidence 4478999999997 67776654 899999999999966654 4899999999999999999888999999999999999
Q ss_pred cCCcCcccCChhhhccCCCCeEeccCCCCCCCCCccccCCCCccEEEcccCcccccCC
Q 005045 90 AWNNLRGSIPNELGQLSGLGFFTLYGNFISGIIPSSIYNISSIYYFSVTQNQLHGQLP 147 (717)
Q Consensus 90 ~~n~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~~l~ 147 (717)
++|+|++..+..|.++++|++|+|++|+|++..|..|..+++|++|+|++|.+++..+
T Consensus 86 s~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c~c~ 143 (192)
T 1w8a_A 86 GENKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFNCNCH 143 (192)
T ss_dssp CSCCCCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTCCBCCSGG
T ss_pred CCCcCCccCHHHhcCCCCCCEEECCCCcCCeeCHHHhhcCCCCCEEEeCCCCccCcCc
Confidence 9999998888889999999999999999999999999999999999999999985544
No 377
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.76 E-value=2.9e-19 Score=204.79 Aligned_cols=219 Identities=20% Similarity=0.143 Sum_probs=84.6
Q ss_pred CCCCEEECCCCcccccCCcCCCCCCCCC-----EEEccCccccccCCccccCCCCCCEEeccCCcCcccCChhhhccCCC
Q 005045 34 TELRSFEASVNDFVGQIPNQLSSLTKLE-----IIGLGGSNLTGNVPAWIGNFSSLKALSLAWNNLRGSIPNELGQLSGL 108 (717)
Q Consensus 34 ~~L~~L~L~~n~l~~~~p~~~~~l~~L~-----~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L 108 (717)
+.++.|+|++|.+.. ++..+....+|. .++++.|.+. ..|+.|..+.+|+.|+|++|.|. .+|..+..+++|
T Consensus 173 ~~~~~l~L~~n~~~~-~~~~~l~~l~Ls~~~i~~~~~~~n~~~-~~~~~~~~l~~L~~L~Ls~n~l~-~l~~~~~~l~~L 249 (727)
T 4b8c_D 173 PLTPKIELFANGKDE-ANQALLQHKKLSQYSIDEDDDIENRMV-MPKDSKYDDQLWHALDLSNLQIF-NISANIFKYDFL 249 (727)
T ss_dssp ---------------------------------------------------CCCCCCEEECTTSCCS-CCCGGGGGCCSC
T ss_pred CccceEEeeCCCCCc-chhhHhhcCccCcccccCcccccccee-cChhhhccCCCCcEEECCCCCCC-CCChhhcCCCCC
Confidence 446666777676663 333332222222 2334445555 56777777788888888888877 666666677888
Q ss_pred CeEeccCCCCCCCCCccccCCCCccEEEcccCcccccCCcccccCCCCcceeecccccccccCCccCCCCCCCCEEeccC
Q 005045 109 GFFTLYGNFISGIIPSSIYNISSIYYFSVTQNQLHGQLPTDVGLTLPNLKIFAGAVNYFTGSIPVSLSNASNLQVLDFAE 188 (717)
Q Consensus 109 ~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~~l~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~ 188 (717)
++|+|++|.|+ .+|..|++|++|++|+|++|.|+ .+|..+. .+++|+.|+|++|.|+ .+|..|..+++|++|+|++
T Consensus 250 ~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~-~lp~~~~-~l~~L~~L~L~~N~l~-~lp~~~~~l~~L~~L~L~~ 325 (727)
T 4b8c_D 250 TRLYLNGNSLT-ELPAEIKNLSNLRVLDLSHNRLT-SLPAELG-SCFQLKYFYFFDNMVT-TLPWEFGNLCNLQFLGVEG 325 (727)
T ss_dssp SCCBCTTSCCS-CCCGGGGGGTTCCEEECTTSCCS-SCCSSGG-GGTTCSEEECCSSCCC-CCCSSTTSCTTCCCEECTT
T ss_pred CEEEeeCCcCc-ccChhhhCCCCCCEEeCcCCcCC-ccChhhc-CCCCCCEEECCCCCCC-ccChhhhcCCCccEEeCCC
Confidence 88888888887 66777777788888888888776 5554432 3444444444444443 3344444445555555555
Q ss_pred ccccccCCCCccCCCCCCeeeccccccCCcccCchhhhhhhccCCCCCEEEeecCcccCcCchhhhhccccccEEecCCC
Q 005045 189 NGLTGTIPGNFGSLKDLVRLNFDQNELGSREIGDLNFLKFLANCTSLEVLGLARNSFGGEMPISIANLSTHLRRLTMGEN 268 (717)
Q Consensus 189 N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~~~~L~~L~l~~N 268 (717)
|.|++.+|..+..+. ..+..|+|++|.+++.+|. .|..|++++|
T Consensus 326 N~l~~~~p~~~~~~~-----------------------------~~~~~l~l~~N~l~~~~p~-------~l~~l~l~~n 369 (727)
T 4b8c_D 326 NPLEKQFLKILTEKS-----------------------------VTGLIFYLRDNRPEIPLPH-------ERRFIEINTD 369 (727)
T ss_dssp SCCCSHHHHHHHHHH-----------------------------HHHHHHHHHHCCCCCCCCC-------C---------
T ss_pred CccCCCChHHHhhcc-----------------------------hhhhHHhhccCcccCcCcc-------ccceeEeecc
Confidence 554444443332211 0112355666666655553 4445555555
Q ss_pred --------ccCCCCCccccCCCCCCEEEccCCcCc
Q 005045 269 --------LMHGNIPVGIGNLVNLNLLGLEGNNLS 295 (717)
Q Consensus 269 --------~l~~~~~~~~~~l~~L~~L~L~~N~l~ 295 (717)
.+.+..+..+.++..+....+++|-+.
T Consensus 370 ~~~~~~~~~l~~~~~~~~~~l~~~~~~~ls~Nil~ 404 (727)
T 4b8c_D 370 GEPQREYDSLQQSTEHLATDLAKRTFTVLSYNTLC 404 (727)
T ss_dssp --------------------------------CCC
T ss_pred cccccccCCccccccchhhcccccceeeeeccccc
Confidence 333344445566667777777888765
No 378
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=99.75 E-value=4.1e-17 Score=173.30 Aligned_cols=268 Identities=12% Similarity=0.064 Sum_probs=192.6
Q ss_pred cCCCCCCEEECCCCcccccCCcCCCCCCCCCEEEccCccccccCCccccCCCCCCEEeccCCcCcccCChhhhccCCCCe
Q 005045 31 SHCTELRSFEASVNDFVGQIPNQLSSLTKLEIIGLGGSNLTGNVPAWIGNFSSLKALSLAWNNLRGSIPNELGQLSGLGF 110 (717)
Q Consensus 31 ~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~ 110 (717)
..+..++.+.+-++ ++.+-..+|.+. +|+.+.|..+ ++.+...+|.+ .+|+.++|.. .++.+.+.+|.++++|+.
T Consensus 110 ~~~~~l~~i~ip~~-i~~I~~~aF~~~-~L~~i~l~~~-i~~I~~~aF~~-~~L~~i~lp~-~l~~I~~~aF~~c~~L~~ 184 (401)
T 4fdw_A 110 EILKGYNEIILPNS-VKSIPKDAFRNS-QIAKVVLNEG-LKSIGDMAFFN-STVQEIVFPS-TLEQLKEDIFYYCYNLKK 184 (401)
T ss_dssp EECSSCSEEECCTT-CCEECTTTTTTC-CCSEEECCTT-CCEECTTTTTT-CCCCEEECCT-TCCEECSSTTTTCTTCCE
T ss_pred EecCCccEEEECCc-cCEehHhhcccC-CccEEEeCCC-ccEECHHhcCC-CCceEEEeCC-CccEehHHHhhCcccCCe
Confidence 34466777777643 554556667764 6888887666 66555666766 3688888875 666566777888888888
Q ss_pred EeccCCCCCCCCCccccCCCCccEEEcccCcccccCCcccccCCCCcceeecccccccccCCccCCCCCCCCEEeccCcc
Q 005045 111 FTLYGNFISGIIPSSIYNISSIYYFSVTQNQLHGQLPTDVGLTLPNLKIFAGAVNYFTGSIPVSLSNASNLQVLDFAENG 190 (717)
Q Consensus 111 L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~~l~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~ 190 (717)
++|++|+++.+...+|. .++|+.+.|..+ ++ .++...|.++++|+.+.+..| ++.+...+|.+ .+|+.+.+ .+.
T Consensus 185 l~l~~n~l~~I~~~aF~-~~~L~~l~lp~~-l~-~I~~~aF~~~~~L~~l~l~~~-l~~I~~~aF~~-~~L~~i~l-p~~ 258 (401)
T 4fdw_A 185 ADLSKTKITKLPASTFV-YAGIEEVLLPVT-LK-EIGSQAFLKTSQLKTIEIPEN-VSTIGQEAFRE-SGITTVKL-PNG 258 (401)
T ss_dssp EECTTSCCSEECTTTTT-TCCCSEEECCTT-CC-EECTTTTTTCTTCCCEECCTT-CCEECTTTTTT-CCCSEEEE-ETT
T ss_pred eecCCCcceEechhhEe-ecccCEEEeCCc-hh-eehhhHhhCCCCCCEEecCCC-ccCcccccccc-CCccEEEe-CCC
Confidence 88888888766666666 477888888744 65 777778878888888888764 55566677777 77888888 455
Q ss_pred ccccCCCCccCCCCCCeeeccccccC-----CcccCchhhhhhhccCCCCCEEEeecCcccCcCchhhhhccccccEEec
Q 005045 191 LTGTIPGNFGSLKDLVRLNFDQNELG-----SREIGDLNFLKFLANCTSLEVLGLARNSFGGEMPISIANLSTHLRRLTM 265 (717)
Q Consensus 191 l~~~~~~~~~~l~~L~~L~l~~N~l~-----~~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~~~~L~~L~l 265 (717)
++.+...+|.++++|+.+.+.+|.+. .++ ...|.++++|+.++|. +.++.....+|... ++|+.+.+
T Consensus 259 i~~I~~~aF~~c~~L~~l~l~~~~~~~~~~~~I~------~~aF~~c~~L~~l~l~-~~i~~I~~~aF~~c-~~L~~l~l 330 (401)
T 4fdw_A 259 VTNIASRAFYYCPELAEVTTYGSTFNDDPEAMIH------PYCLEGCPKLARFEIP-ESIRILGQGLLGGN-RKVTQLTI 330 (401)
T ss_dssp CCEECTTTTTTCTTCCEEEEESSCCCCCTTCEEC------TTTTTTCTTCCEECCC-TTCCEECTTTTTTC-CSCCEEEE
T ss_pred ccEEChhHhhCCCCCCEEEeCCccccCCcccEEC------HHHhhCCccCCeEEeC-CceEEEhhhhhcCC-CCccEEEE
Confidence 66566778888888888888877665 344 5667888888888888 44663344445444 58888888
Q ss_pred CCCccCCCCCccccCCCCCCEEEccCCcCccccchhhhcCC-CCCeEEcccCcCC
Q 005045 266 GENLMHGNIPVGIGNLVNLNLLGLEGNNLSGSVPEVIGRLN-KLEGLGLNVNKFS 319 (717)
Q Consensus 266 ~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~-~L~~L~Ls~N~l~ 319 (717)
..| ++.+...+|.++ +|+.+++++|.+....+..|.+++ ++..|++..+.+.
T Consensus 331 p~~-l~~I~~~aF~~~-~L~~l~l~~n~~~~l~~~~F~~~~~~l~~l~vp~~~~~ 383 (401)
T 4fdw_A 331 PAN-VTQINFSAFNNT-GIKEVKVEGTTPPQVFEKVWYGFPDDITVIRVPAESVE 383 (401)
T ss_dssp CTT-CCEECTTSSSSS-CCCEEEECCSSCCBCCCSSCCCSCTTCCEEEECGGGHH
T ss_pred Ccc-ccEEcHHhCCCC-CCCEEEEcCCCCcccccccccCCCCCccEEEeCHHHHH
Confidence 665 665777888888 999999999988877777788874 6888888777643
No 379
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.75 E-value=3.8e-18 Score=162.46 Aligned_cols=132 Identities=24% Similarity=0.307 Sum_probs=110.2
Q ss_pred CEEEeecCcccCcCchhhhhccccccEEecCCCccCCCCCc-cccCCCCCCEEEccCCcCccccchhhhcCCCCCeEEcc
Q 005045 236 EVLGLARNSFGGEMPISIANLSTHLRRLTMGENLMHGNIPV-GIGNLVNLNLLGLEGNNLSGSVPEVIGRLNKLEGLGLN 314 (717)
Q Consensus 236 ~~L~L~~N~l~~~~p~~~~~~~~~L~~L~l~~N~l~~~~~~-~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls 314 (717)
+.+++++|.++ .+|..+. .+|++|++++|.+++..+. .|.++++|++|+|++|+|++..|..|.++++|++|+|+
T Consensus 11 ~~l~~s~~~l~-~ip~~~~---~~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls 86 (192)
T 1w8a_A 11 TTVDCTGRGLK-EIPRDIP---LHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLG 86 (192)
T ss_dssp TEEECTTSCCS-SCCSCCC---TTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECC
T ss_pred CEEEcCCCCcC-cCccCCC---CCCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEECC
Confidence 56777777776 6676543 3788888888888866654 48888899999999999988778888889999999999
Q ss_pred cCcCCCCCCcccccccccceeecccccccccCCcCccCcCCCceEEeecccCCCCCC
Q 005045 315 VNKFSGLIPSSLGNLTILTRLWMEENRLEGSIPPSLGNCQKLLVLNLSSNDLNGTIP 371 (717)
Q Consensus 315 ~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p 371 (717)
+|+++++.+..|.++++|++|+|++|++++..|..|..+++|+.|++++|+|++.++
T Consensus 87 ~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c~c~ 143 (192)
T 1w8a_A 87 ENKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFNCNCH 143 (192)
T ss_dssp SCCCCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTCCBCCSGG
T ss_pred CCcCCccCHHHhcCCCCCCEEECCCCcCCeeCHHHhhcCCCCCEEEeCCCCccCcCc
Confidence 999988888888888999999999999988888888889999999999999988766
No 380
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.72 E-value=2.7e-17 Score=156.54 Aligned_cols=127 Identities=22% Similarity=0.351 Sum_probs=89.8
Q ss_pred cEEEcCCCcCcCCCCcCCcCCCCCCEEECCCCcccccCCcCCCCCCCCCEEEccCccccccCCccccCCCCCCEEeccCC
Q 005045 13 QDLNLTYNYLSGKIPTNLSHCTELRSFEASVNDFVGQIPNQLSSLTKLEIIGLGGSNLTGNVPAWIGNFSSLKALSLAWN 92 (717)
Q Consensus 13 ~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n 92 (717)
+++++++|+++ .+|..+. ++|++|+|++|.++ .+|..|.++++|++|+|++|.|++..+..|.++++|++|+|++|
T Consensus 13 ~~l~~~~~~l~-~ip~~~~--~~l~~L~L~~n~i~-~ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N 88 (193)
T 2wfh_A 13 TVVRCSNKGLK-VLPKGIP--RDVTELYLDGNQFT-LVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYN 88 (193)
T ss_dssp TEEECTTSCCS-SCCSCCC--TTCCEEECCSSCCC-SCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred CEEEcCCCCCC-cCCCCCC--CCCCEEECCCCcCc-hhHHHhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCCC
Confidence 56777777777 5565443 46777777777776 56666777777777777777777666666777777777777777
Q ss_pred cCcccCChhhhccCCCCeEeccCCCCCCCCCccccCCCCccEEEcccCccc
Q 005045 93 NLRGSIPNELGQLSGLGFFTLYGNFISGIIPSSIYNISSIYYFSVTQNQLH 143 (717)
Q Consensus 93 ~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~ 143 (717)
+|++..+..|.++++|++|+|++|.|+.+.+..|..+++|+.|+|++|.+.
T Consensus 89 ~l~~i~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~ 139 (193)
T 2wfh_A 89 RLRCIPPRTFDGLKSLRLLSLHGNDISVVPEGAFNDLSALSHLAIGANPLY 139 (193)
T ss_dssp CCCBCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECCSSCEE
T ss_pred ccCEeCHHHhCCCCCCCEEECCCCCCCeeChhhhhcCccccEEEeCCCCee
Confidence 777666667777777777777777777666666777777777777777765
No 381
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.72 E-value=2.5e-17 Score=153.31 Aligned_cols=133 Identities=19% Similarity=0.217 Sum_probs=92.2
Q ss_pred CCCCCEEECCCCccc-ccCCcCCCCCCCCCEEEccCccccccCCccccCCCCCCEEeccCCcCcccCChhhhccCCCCeE
Q 005045 33 CTELRSFEASVNDFV-GQIPNQLSSLTKLEIIGLGGSNLTGNVPAWIGNFSSLKALSLAWNNLRGSIPNELGQLSGLGFF 111 (717)
Q Consensus 33 l~~L~~L~L~~n~l~-~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L 111 (717)
.++|++|++++|.++ +.+|..+..+++|++|+|++|.|++. ..+..+++|++|+|++|++++.+|..+..+++|++|
T Consensus 23 ~~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L 100 (168)
T 2ell_A 23 PAAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISV--SNLPKLPKLKKLELSENRIFGGLDMLAEKLPNLTHL 100 (168)
T ss_dssp TTSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSCCCCC--SSCCCCSSCCEEEEESCCCCSCCCHHHHHCTTCCEE
T ss_pred cccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCCCCCh--hhhccCCCCCEEECcCCcCchHHHHHHhhCCCCCEE
Confidence 367778888888776 56777777777888888888877743 567777778888888888876677777777788888
Q ss_pred eccCCCCCCCCC-ccccCCCCccEEEcccCcccccCCc---ccccCCCCcceeeccccccc
Q 005045 112 TLYGNFISGIIP-SSIYNISSIYYFSVTQNQLHGQLPT---DVGLTLPNLKIFAGAVNYFT 168 (717)
Q Consensus 112 ~L~~N~i~~~~~-~~~~~l~~L~~L~L~~N~l~~~l~~---~~~~~l~~L~~L~l~~n~l~ 168 (717)
+|++|.|+++.. ..+..+++|++|++++|.++ .+|. ..+..+++|+.|++++|.+.
T Consensus 101 ~Ls~N~l~~~~~~~~l~~l~~L~~L~l~~N~l~-~~~~~~~~~~~~l~~L~~L~l~~n~~~ 160 (168)
T 2ell_A 101 NLSGNKLKDISTLEPLKKLECLKSLDLFNCEVT-NLNDYRESVFKLLPQLTYLDGYDREDQ 160 (168)
T ss_dssp ECBSSSCCSSGGGGGGSSCSCCCEEECCSSGGG-TSTTHHHHHHTTCSSCCEETTEETTSC
T ss_pred eccCCccCcchhHHHHhcCCCCCEEEeeCCcCc-chHHHHHHHHHhCccCcEecCCCCChh
Confidence 888887775432 66777777777777777776 4443 33344555555555555444
No 382
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.72 E-value=8.3e-18 Score=156.54 Aligned_cols=136 Identities=18% Similarity=0.236 Sum_probs=123.1
Q ss_pred eecEEEcCCCcCc-CCCCcCCcCCCCCCEEECCCCcccccCCcCCCCCCCCCEEEccCccccccCCccccCCCCCCEEec
Q 005045 11 MTQDLNLTYNYLS-GKIPTNLSHCTELRSFEASVNDFVGQIPNQLSSLTKLEIIGLGGSNLTGNVPAWIGNFSSLKALSL 89 (717)
Q Consensus 11 ~~~~L~L~~n~l~-~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L 89 (717)
.+++|+|++|+++ +.+|..|..+++|++|++++|.+++. ..|..+++|++|+|++|.+++.+|..+..+++|++|+|
T Consensus 25 ~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L 102 (168)
T 2ell_A 25 AVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISV--SNLPKLPKLKKLELSENRIFGGLDMLAEKLPNLTHLNL 102 (168)
T ss_dssp SCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSCCCCC--SSCCCCSSCCEEEEESCCCCSCCCHHHHHCTTCCEEEC
T ss_pred cCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCCCCCh--hhhccCCCCCEEECcCCcCchHHHHHHhhCCCCCEEec
Confidence 6899999999998 77898899999999999999999965 77999999999999999999778888888999999999
Q ss_pred cCCcCcccCC-hhhhccCCCCeEeccCCCCCCCCC---ccccCCCCccEEEcccCcccccCCcc
Q 005045 90 AWNNLRGSIP-NELGQLSGLGFFTLYGNFISGIIP---SSIYNISSIYYFSVTQNQLHGQLPTD 149 (717)
Q Consensus 90 ~~n~l~~~~~-~~~~~l~~L~~L~L~~N~i~~~~~---~~~~~l~~L~~L~L~~N~l~~~l~~~ 149 (717)
++|+|++... ..|..+++|++|+|++|.+++..+ ..|..+++|++|++++|.+. .+|..
T Consensus 103 s~N~l~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~~n~~~-~~~~~ 165 (168)
T 2ell_A 103 SGNKLKDISTLEPLKKLECLKSLDLFNCEVTNLNDYRESVFKLLPQLTYLDGYDREDQ-EAPDS 165 (168)
T ss_dssp BSSSCCSSGGGGGGSSCSCCCEEECCSSGGGTSTTHHHHHHTTCSSCCEETTEETTSC-BCCSS
T ss_pred cCCccCcchhHHHHhcCCCCCEEEeeCCcCcchHHHHHHHHHhCccCcEecCCCCChh-hcccc
Confidence 9999995432 789999999999999999997666 58999999999999999997 66653
No 383
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.71 E-value=4.9e-17 Score=154.67 Aligned_cols=127 Identities=19% Similarity=0.243 Sum_probs=69.3
Q ss_pred CEEECCCCcccccCCcCCCCCCCCCEEEccCccccccCCccccCCCCCCEEeccCCcCcccCChhhhccCCCCeEeccCC
Q 005045 37 RSFEASVNDFVGQIPNQLSSLTKLEIIGLGGSNLTGNVPAWIGNFSSLKALSLAWNNLRGSIPNELGQLSGLGFFTLYGN 116 (717)
Q Consensus 37 ~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N 116 (717)
+.+++++|.++ .+|..+. ++|++|+|++|.|+ .+|..|.++++|++|+|++|+|++..+.+|.++++|++|+|++|
T Consensus 13 ~~l~~~~~~l~-~ip~~~~--~~l~~L~L~~n~i~-~ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N 88 (193)
T 2wfh_A 13 TVVRCSNKGLK-VLPKGIP--RDVTELYLDGNQFT-LVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYN 88 (193)
T ss_dssp TEEECTTSCCS-SCCSCCC--TTCCEEECCSSCCC-SCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred CEEEcCCCCCC-cCCCCCC--CCCCEEECCCCcCc-hhHHHhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCCC
Confidence 34555555555 4444332 34555555555555 44455555555555555555555444455555555555555555
Q ss_pred CCCCCCCccccCCCCccEEEcccCcccccCCcccccCCCCcceeecccccccccCCccCCCCCCCCEEeccCcccc
Q 005045 117 FISGIIPSSIYNISSIYYFSVTQNQLHGQLPTDVGLTLPNLKIFAGAVNYFTGSIPVSLSNASNLQVLDFAENGLT 192 (717)
Q Consensus 117 ~i~~~~~~~~~~l~~L~~L~L~~N~l~~~l~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~ 192 (717)
+|+++.+..|.++++|++|+|++|.|+ ...+..|..+++|+.|+|++|.+.
T Consensus 89 ~l~~i~~~~f~~l~~L~~L~L~~N~l~-------------------------~~~~~~~~~l~~L~~L~L~~N~~~ 139 (193)
T 2wfh_A 89 RLRCIPPRTFDGLKSLRLLSLHGNDIS-------------------------VVPEGAFNDLSALSHLAIGANPLY 139 (193)
T ss_dssp CCCBCCTTTTTTCTTCCEEECCSSCCC-------------------------BCCTTTTTTCTTCCEEECCSSCEE
T ss_pred ccCEeCHHHhCCCCCCCEEECCCCCCC-------------------------eeChhhhhcCccccEEEeCCCCee
Confidence 555555555555555555555555554 344444556666666666666665
No 384
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=99.70 E-value=1.4e-16 Score=149.48 Aligned_cols=132 Identities=15% Similarity=0.176 Sum_probs=107.9
Q ss_pred eecEEEcCCCcCcCCCCcCCcCCCCCCEEECCCCcccccCCcCCCCCCCCCEEEccCccccccCCccccCCCCCCEEecc
Q 005045 11 MTQDLNLTYNYLSGKIPTNLSHCTELRSFEASVNDFVGQIPNQLSSLTKLEIIGLGGSNLTGNVPAWIGNFSSLKALSLA 90 (717)
Q Consensus 11 ~~~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~ 90 (717)
..+.+++++|+++ .+|..+. ++|++|++++|.+++..+..|.++++|++|+|++|.|++..+..|..+++|++|+|+
T Consensus 8 ~~~~l~~~~~~l~-~~p~~~~--~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~ 84 (177)
T 2o6r_A 8 SGTEIRCNSKGLT-SVPTGIP--SSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLH 84 (177)
T ss_dssp ETTEEECCSSCCS-SCCTTCC--TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECC
T ss_pred CCCEEEecCCCCc-cCCCCCC--CCCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcceEeChhHccCCCccCEEECC
Confidence 4578889999988 5665443 688999999998886666677888899999999999886666677888889999999
Q ss_pred CCcCcccCChhhhccCCCCeEeccCCCCCCCCCccccCCCCccEEEcccCccccc
Q 005045 91 WNNLRGSIPNELGQLSGLGFFTLYGNFISGIIPSSIYNISSIYYFSVTQNQLHGQ 145 (717)
Q Consensus 91 ~n~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~~ 145 (717)
+|+|++..+..|..+++|++|+|++|.++++.+..|..+++|++|+|++|.+.+.
T Consensus 85 ~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~ 139 (177)
T 2o6r_A 85 ENKLQSLPNGVFDKLTQLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCS 139 (177)
T ss_dssp SSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCC
T ss_pred CCCccccCHHHhhCCcccCEEECcCCcceEeCHHHhcCCcccCEEEecCCCeecc
Confidence 9998877777788888899999999988877777778888888888888888743
No 385
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.69 E-value=3.8e-17 Score=148.73 Aligned_cols=127 Identities=18% Similarity=0.255 Sum_probs=84.8
Q ss_pred CCCCEEECCCCccc-ccCCcCCCCCCCCCEEEccCccccccCCccccCCCCCCEEeccCCcCcccCChhhhccCCCCeEe
Q 005045 34 TELRSFEASVNDFV-GQIPNQLSSLTKLEIIGLGGSNLTGNVPAWIGNFSSLKALSLAWNNLRGSIPNELGQLSGLGFFT 112 (717)
Q Consensus 34 ~~L~~L~L~~n~l~-~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ 112 (717)
++|+.|++++|.++ +.+|..+..+++|++|++++|.+++. ..++.+++|++|+|++|++++.+|..+..+++|++|+
T Consensus 17 ~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~ 94 (149)
T 2je0_A 17 SDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSI--ANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTHLN 94 (149)
T ss_dssp GGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCCCCC--TTCCCCTTCCEEECCSSCCCSCTHHHHHHCTTCCEEE
T ss_pred ccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCCCCCc--hhhhcCCCCCEEECCCCcccchHHHHhhhCCCCCEEE
Confidence 56777777777776 56666667777777777777777743 5567777777777777777755666666677777777
Q ss_pred ccCCCCCCC-CCccccCCCCccEEEcccCcccccCCc---ccccCCCCcceeecc
Q 005045 113 LYGNFISGI-IPSSIYNISSIYYFSVTQNQLHGQLPT---DVGLTLPNLKIFAGA 163 (717)
Q Consensus 113 L~~N~i~~~-~~~~~~~l~~L~~L~L~~N~l~~~l~~---~~~~~l~~L~~L~l~ 163 (717)
|++|.+++. .+..+..+++|++|++++|.++ .++. ..+..+++|+.|+++
T Consensus 95 ls~N~i~~~~~~~~~~~l~~L~~L~l~~N~l~-~~~~~~~~~~~~l~~L~~L~l~ 148 (149)
T 2je0_A 95 LSGNKIKDLSTIEPLKKLENLKSLDLFNCEVT-NLNDYRENVFKLLPQLTYLDGY 148 (149)
T ss_dssp CTTSCCCSHHHHGGGGGCTTCCEEECTTCGGG-GSTTHHHHHHHHCTTCCEETTB
T ss_pred CCCCcCCChHHHHHHhhCCCCCEEeCcCCccc-chHHHHHHHHHHCCCcccccCC
Confidence 777777753 2366777777777777777776 4443 344455555555544
No 386
>1zth_A RIO1 serine protein kinase; ribosome biogenesis, rRNA, ADP, manganese, transferase; HET: ADP; 1.89A {Archaeoglobus fulgidus} PDB: 1zp9_A* 1ztf_A*
Probab=99.69 E-value=5.4e-18 Score=169.48 Aligned_cols=138 Identities=20% Similarity=0.213 Sum_probs=105.8
Q ss_pred cccccccccCcccccceEEEEe-CCCch--hhhHHhHhhhh------------------------hHHHHHHHHHHHHhc
Q 005045 389 DNFSKENLIGTGSFGSVYKGTL-GDGTI--VAIKVLKLQQQ------------------------GALKSFIDECNALKS 441 (717)
Q Consensus 389 ~~y~~~~~ig~g~~g~v~~~~~-~~~~~--vavK~~~~~~~------------------------~~~~~~~~e~~~l~~ 441 (717)
.-|.+.+.||+|++|.||+|.+ .+|+. ||||++..... .....+.+|++++++
T Consensus 47 ~~~~i~~~ig~G~~g~Vy~a~~~~~g~~~~vAvK~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~ 126 (258)
T 1zth_A 47 YITAMGGVISTGKEANVFYADGVFDGKPVAMAVKIYRIETSEFDKMDEYLYGDERFDMRRISPKEKVFIWTEKEFRNLER 126 (258)
T ss_dssp SEEEEEEEEEECSSEEEEEEEEEETTEEEEEEEEEECCC-------GGGTTTCTTSCC----CHHHHHHHHHHHHHHHHH
T ss_pred CchhhCCEEeecceEEEEEEEEcCCCcEeeEEEEEEECCccchhhHHHhhcccchhhhhccChHHHHHHHHHHHHHHHHH
Confidence 3477889999999999999997 68999 99998643210 112468899999999
Q ss_pred CCCCce--eEEEEeeccccCCCCceEEEEEecCCC-C----ChhhhccCCCCCcccccccCHHHHHHHHHHHHHHHHHHH
Q 005045 442 TRHRNI--LRVITACSSVDLEGNDFKALVFEFMSN-G----NLDQWLHPSPAEHYQFKKLSVIQRLNIAIDVASALDYLH 514 (717)
Q Consensus 442 l~h~ni--~~~~~~~~~~~~~~~~~~~lv~e~~~~-~----~L~~~l~~~~~~~~~~~~~~~~~~~~i~~~i~~~l~~LH 514 (717)
+.|+++ +..+.. +..++||||+.+ | +|.++... .++..+..++.|++.|+.|||
T Consensus 127 l~~~~i~~p~~~~~---------~~~~lVmE~~g~~g~~~~~L~~~~~~----------~~~~~~~~i~~qi~~~l~~lH 187 (258)
T 1zth_A 127 AKEAGVSVPQPYTY---------MKNVLLMEFIGEDELPAPTLVELGRE----------LKELDVEGIFNDVVENVKRLY 187 (258)
T ss_dssp HHHTTCCCCCEEEE---------ETTEEEEECCEETTEECCBHHHHGGG----------GGGSCHHHHHHHHHHHHHHHH
T ss_pred HHhCCCCCCeEEEc---------CCCEEEEEecCCCCCccccHHHHhhc----------cChHHHHHHHHHHHHHHHHHH
Confidence 977753 333332 245899999942 3 66665431 223457789999999999999
Q ss_pred -hcCCCCeeecCCCCCCEEeCCCCceEEeeeccchhc
Q 005045 515 -HHCDTPIAHCDLKPSNVLLDKDMTAHVGDFGLAKFL 550 (717)
Q Consensus 515 -~~~~~~ivH~dlkp~NIll~~~~~~kl~Dfg~~~~~ 550 (717)
+. ||+||||||+|||++. .++|+|||.|...
T Consensus 188 ~~~---givHrDlkp~NILl~~--~~~liDFG~a~~~ 219 (258)
T 1zth_A 188 QEA---ELVHADLSEYNIMYID--KVYFIDMGQAVTL 219 (258)
T ss_dssp HTS---CEECSSCSTTSEEESS--SEEECCCTTCEET
T ss_pred HHC---CEEeCCCCHHHEEEcC--cEEEEECcccccC
Confidence 76 9999999999999988 9999999998753
No 387
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=99.69 E-value=8.5e-16 Score=163.92 Aligned_cols=319 Identities=13% Similarity=0.067 Sum_probs=245.7
Q ss_pred cCcCCCCcCCcCCCCCCEEECCCCcccccCCcCCCCCCCCCEEEccCccccccCCccccCCCCCCEEeccCCcCcccCCh
Q 005045 21 YLSGKIPTNLSHCTELRSFEASVNDFVGQIPNQLSSLTKLEIIGLGGSNLTGNVPAWIGNFSSLKALSLAWNNLRGSIPN 100 (717)
Q Consensus 21 ~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~ 100 (717)
.++.+-..+|.++.+|+.+.|..+ ++.+-..+|.++++|+.++|.++ ++.....+|.++.+|+.+.+..+ ++.....
T Consensus 58 ~VtsIg~~AF~~c~~L~~i~lp~~-i~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~c~~L~~i~~p~~-l~~i~~~ 134 (394)
T 4fs7_A 58 DVVSIGYAAFQGCRKVTEIKIPST-VREIGEFAFENCSKLEIINIPDS-VKMIGRCTFSGCYALKSILLPLM-LKSIGVE 134 (394)
T ss_dssp EEEEECTTTTTTCTTEEEEECCTT-CCEECTTTTTTCTTCCEECCCTT-CCEECTTTTTTCTTCCCCCCCTT-CCEECTT
T ss_pred eEeEhHHHHhhCCCCceEEEeCCC-ccCcchhHhhCCCCCcEEEeCCC-ceEccchhhcccccchhhcccCc-eeeecce
Confidence 456567789999999999999754 77666778999999999999765 66566778999999999888755 5547777
Q ss_pred hhhccCCCCeEeccCCCCCCCCCccccCCCCccEEEcccCcccccCCcccccCCCCcceeecccccccccCCccCCCCCC
Q 005045 101 ELGQLSGLGFFTLYGNFISGIIPSSIYNISSIYYFSVTQNQLHGQLPTDVGLTLPNLKIFAGAVNYFTGSIPVSLSNASN 180 (717)
Q Consensus 101 ~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~~l~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~ 180 (717)
+|.+...+...... .+..+...+|.++++|+.+.+.++ +. .++...|.++.+|+.+.+..| +..+...+|.++..
T Consensus 135 aF~~~~~~~~~~~~--~~~~i~~~aF~~c~~L~~i~l~~~-~~-~I~~~~F~~c~~L~~i~l~~~-~~~I~~~~F~~~~~ 209 (394)
T 4fs7_A 135 AFKGCDFKEITIPE--GVTVIGDEAFATCESLEYVSLPDS-ME-TLHNGLFSGCGKLKSIKLPRN-LKIIRDYCFAECIL 209 (394)
T ss_dssp TTTTCCCSEEECCT--TCCEECTTTTTTCTTCCEEECCTT-CC-EECTTTTTTCTTCCBCCCCTT-CCEECTTTTTTCTT
T ss_pred eeecccccccccCc--cccccchhhhcccCCCcEEecCCc-cc-eeccccccCCCCceEEEcCCC-ceEeCchhhccccc
Confidence 88887654433332 333356778999999999999765 44 788899989999999999877 56577788999999
Q ss_pred CCEEeccCccccccCCCCccCCCCCCeeeccccccCCcccCchhhhhhhccCCCCCEEEeecCcccCcCchhhhhccccc
Q 005045 181 LQVLDFAENGLTGTIPGNFGSLKDLVRLNFDQNELGSREIGDLNFLKFLANCTSLEVLGLARNSFGGEMPISIANLSTHL 260 (717)
Q Consensus 181 L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~~~~L 260 (717)
|+.+.+..+... +...+....+|+.+.+..+ ++.++ ...|.++..|+.+.+..+... .....+... ..+
T Consensus 210 L~~i~~~~~~~~--i~~~~~~~~~l~~i~ip~~-~~~i~------~~~f~~~~~l~~~~~~~~~~~-i~~~~F~~~-~~l 278 (394)
T 4fs7_A 210 LENMEFPNSLYY--LGDFALSKTGVKNIIIPDS-FTELG------KSVFYGCTDLESISIQNNKLR-IGGSLFYNC-SGL 278 (394)
T ss_dssp CCBCCCCTTCCE--ECTTTTTTCCCCEEEECTT-CCEEC------SSTTTTCSSCCEEEECCTTCE-ECSCTTTTC-TTC
T ss_pred cceeecCCCceE--eehhhcccCCCceEEECCC-ceecc------cccccccccceeEEcCCCcce-eeccccccc-ccc
Confidence 999988877654 3344555678888888643 34444 356788899999999887655 555555555 578
Q ss_pred cEEecCCCccCCCCCccccCCCCCCEEEccCCcCccccchhhhcCCCCCeEEcccCcCCCCCCcccccccccceeecccc
Q 005045 261 RRLTMGENLMHGNIPVGIGNLVNLNLLGLEGNNLSGSVPEVIGRLNKLEGLGLNVNKFSGLIPSSLGNLTILTRLWMEEN 340 (717)
Q Consensus 261 ~~L~l~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N 340 (717)
+.+....+.+ ....|..+.+|+.+.+..+ ++.+...+|.++.+|+.++|..+ ++.+...+|.++.+|+.++|..|
T Consensus 279 ~~~~~~~~~i---~~~~F~~~~~L~~i~l~~~-i~~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~c~~L~~i~lp~~ 353 (394)
T 4fs7_A 279 KKVIYGSVIV---PEKTFYGCSSLTEVKLLDS-VKFIGEEAFESCTSLVSIDLPYL-VEEIGKRSFRGCTSLSNINFPLS 353 (394)
T ss_dssp CEEEECSSEE---CTTTTTTCTTCCEEEECTT-CCEECTTTTTTCTTCCEECCCTT-CCEECTTTTTTCTTCCEECCCTT
T ss_pred ceeccCceee---ccccccccccccccccccc-cceechhhhcCCCCCCEEEeCCc-ccEEhHHhccCCCCCCEEEECcc
Confidence 8888877654 3456888899999999765 66567778999999999999754 77787889999999999999877
Q ss_pred cccccCCcCccCcCCCceEEeecc
Q 005045 341 RLEGSIPPSLGNCQKLLVLNLSSN 364 (717)
Q Consensus 341 ~l~~~~p~~~~~l~~L~~L~l~~N 364 (717)
++..-..+|.++.+|+.+++..+
T Consensus 354 -l~~I~~~aF~~C~~L~~i~lp~~ 376 (394)
T 4fs7_A 354 -LRKIGANAFQGCINLKKVELPKR 376 (394)
T ss_dssp -CCEECTTTBTTCTTCCEEEEEGG
T ss_pred -ccEehHHHhhCCCCCCEEEECCC
Confidence 76566788999999999998654
No 388
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=99.69 E-value=9.9e-17 Score=150.62 Aligned_cols=133 Identities=22% Similarity=0.244 Sum_probs=116.0
Q ss_pred CCEEEeecCcccCcCchhhhhccccccEEecCCCccCCCCCccccCCCCCCEEEccCCcCccccchhhhcCCCCCeEEcc
Q 005045 235 LEVLGLARNSFGGEMPISIANLSTHLRRLTMGENLMHGNIPVGIGNLVNLNLLGLEGNNLSGSVPEVIGRLNKLEGLGLN 314 (717)
Q Consensus 235 L~~L~L~~N~l~~~~p~~~~~~~~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls 314 (717)
.+.+++++|.++ .+|..+. ++|++|++++|.+++..+..|.++++|++|+|++|++++..+..|..+++|++|+|+
T Consensus 9 ~~~l~~~~~~l~-~~p~~~~---~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~ 84 (177)
T 2o6r_A 9 GTEIRCNSKGLT-SVPTGIP---SSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLH 84 (177)
T ss_dssp TTEEECCSSCCS-SCCTTCC---TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECC
T ss_pred CCEEEecCCCCc-cCCCCCC---CCCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcceEeChhHccCCCccCEEECC
Confidence 467788888887 6665443 589999999999987777788999999999999999997777778999999999999
Q ss_pred cCcCCCCCCcccccccccceeecccccccccCCcCccCcCCCceEEeecccCCCCCC
Q 005045 315 VNKFSGLIPSSLGNLTILTRLWMEENRLEGSIPPSLGNCQKLLVLNLSSNDLNGTIP 371 (717)
Q Consensus 315 ~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p 371 (717)
+|++++..+..|..+++|++|+|++|++++..+..+..+++|+.|++++|++++.+|
T Consensus 85 ~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~ 141 (177)
T 2o6r_A 85 ENKLQSLPNGVFDKLTQLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP 141 (177)
T ss_dssp SSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCHH
T ss_pred CCCccccCHHHhhCCcccCEEECcCCcceEeCHHHhcCCcccCEEEecCCCeeccCc
Confidence 999998888889999999999999999996666667899999999999999998876
No 389
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.69 E-value=3.1e-17 Score=149.34 Aligned_cols=128 Identities=16% Similarity=0.222 Sum_probs=116.5
Q ss_pred ceecEEEcCCCcCc-CCCCcCCcCCCCCCEEECCCCcccccCCcCCCCCCCCCEEEccCccccccCCccccCCCCCCEEe
Q 005045 10 LMTQDLNLTYNYLS-GKIPTNLSHCTELRSFEASVNDFVGQIPNQLSSLTKLEIIGLGGSNLTGNVPAWIGNFSSLKALS 88 (717)
Q Consensus 10 ~~~~~L~L~~n~l~-~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~ 88 (717)
.++++|++++|.++ +.+|..+..+++|++|++++|.+++. ..+.++++|++|+|++|.+++.+|..+..+++|++|+
T Consensus 17 ~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~ 94 (149)
T 2je0_A 17 SDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSI--ANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTHLN 94 (149)
T ss_dssp GGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCCCCC--TTCCCCTTCCEEECCSSCCCSCTHHHHHHCTTCCEEE
T ss_pred ccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCCCCCc--hhhhcCCCCCEEECCCCcccchHHHHhhhCCCCCEEE
Confidence 47899999999998 78899999999999999999999965 6799999999999999999977888888899999999
Q ss_pred ccCCcCccc-CChhhhccCCCCeEeccCCCCCCCCC---ccccCCCCccEEEccc
Q 005045 89 LAWNNLRGS-IPNELGQLSGLGFFTLYGNFISGIIP---SSIYNISSIYYFSVTQ 139 (717)
Q Consensus 89 L~~n~l~~~-~~~~~~~l~~L~~L~L~~N~i~~~~~---~~~~~l~~L~~L~L~~ 139 (717)
|++|++++. .+..+..+++|++|++++|.+++..+ ..+..+++|+.|++++
T Consensus 95 ls~N~i~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~d 149 (149)
T 2je0_A 95 LSGNKIKDLSTIEPLKKLENLKSLDLFNCEVTNLNDYRENVFKLLPQLTYLDGYD 149 (149)
T ss_dssp CTTSCCCSHHHHGGGGGCTTCCEEECTTCGGGGSTTHHHHHHHHCTTCCEETTBC
T ss_pred CCCCcCCChHHHHHHhhCCCCCEEeCcCCcccchHHHHHHHHHHCCCcccccCCC
Confidence 999999954 34789999999999999999997766 6899999999999874
No 390
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=99.68 E-value=1.1e-15 Score=163.11 Aligned_cols=321 Identities=9% Similarity=0.015 Sum_probs=180.9
Q ss_pred eecEEEcCCCcCcCCCCcCCcCCCCCCEEECCCCcccccCCcCCCCCCCCCEEEccCccccccCCccccCCCCCCEEecc
Q 005045 11 MTQDLNLTYNYLSGKIPTNLSHCTELRSFEASVNDFVGQIPNQLSSLTKLEIIGLGGSNLTGNVPAWIGNFSSLKALSLA 90 (717)
Q Consensus 11 ~~~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~ 90 (717)
+|+++.|.. .++.+...+|.+|++|+.++|.++ ++.+-..+|.++.+|+.+.+..+ +......+|.+...+.....
T Consensus 72 ~L~~i~lp~-~i~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~c~~L~~i~~p~~-l~~i~~~aF~~~~~~~~~~~- 147 (394)
T 4fs7_A 72 KVTEIKIPS-TVREIGEFAFENCSKLEIINIPDS-VKMIGRCTFSGCYALKSILLPLM-LKSIGVEAFKGCDFKEITIP- 147 (394)
T ss_dssp TEEEEECCT-TCCEECTTTTTTCTTCCEECCCTT-CCEECTTTTTTCTTCCCCCCCTT-CCEECTTTTTTCCCSEEECC-
T ss_pred CceEEEeCC-CccCcchhHhhCCCCCcEEEeCCC-ceEccchhhcccccchhhcccCc-eeeecceeeecccccccccC-
Confidence 566666653 355455566667777777776544 44344555666666666666544 33344455555543333222
Q ss_pred CCcCcccCChhhhccCCCCeEeccCCCCCCCCCccccCCCCccEEEcccCcccccCCcccccCCCCcceeeccccccccc
Q 005045 91 WNNLRGSIPNELGQLSGLGFFTLYGNFISGIIPSSIYNISSIYYFSVTQNQLHGQLPTDVGLTLPNLKIFAGAVNYFTGS 170 (717)
Q Consensus 91 ~n~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~~l~~~~~~~l~~L~~L~l~~n~l~~~ 170 (717)
+.+..+...+|.++++|+.+.+.++.. .+...+|.++++|+.+++..| ++ .++...|.....|+.+.+..+...
T Consensus 148 -~~~~~i~~~aF~~c~~L~~i~l~~~~~-~I~~~~F~~c~~L~~i~l~~~-~~-~I~~~~F~~~~~L~~i~~~~~~~~-- 221 (394)
T 4fs7_A 148 -EGVTVIGDEAFATCESLEYVSLPDSME-TLHNGLFSGCGKLKSIKLPRN-LK-IIRDYCFAECILLENMEFPNSLYY-- 221 (394)
T ss_dssp -TTCCEECTTTTTTCTTCCEEECCTTCC-EECTTTTTTCTTCCBCCCCTT-CC-EECTTTTTTCTTCCBCCCCTTCCE--
T ss_pred -ccccccchhhhcccCCCcEEecCCccc-eeccccccCCCCceEEEcCCC-ce-EeCchhhccccccceeecCCCceE--
Confidence 222224455666666777777665433 355666666667776666655 44 566666666666666666655433
Q ss_pred CCccCCCCCCCCEEeccCccccccCCCCccCCCCCCeeeccccccCCcccCchhhhhhhccCCCCCEEEeecCcccCcCc
Q 005045 171 IPVSLSNASNLQVLDFAENGLTGTIPGNFGSLKDLVRLNFDQNELGSREIGDLNFLKFLANCTSLEVLGLARNSFGGEMP 250 (717)
Q Consensus 171 ~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~~~p 250 (717)
+...+....+|+.+.+..+. +......|..+..|+.+.+..+.. .+. ...|.++..++.+....+.+. .
T Consensus 222 i~~~~~~~~~l~~i~ip~~~-~~i~~~~f~~~~~l~~~~~~~~~~-~i~------~~~F~~~~~l~~~~~~~~~i~---~ 290 (394)
T 4fs7_A 222 LGDFALSKTGVKNIIIPDSF-TELGKSVFYGCTDLESISIQNNKL-RIG------GSLFYNCSGLKKVIYGSVIVP---E 290 (394)
T ss_dssp ECTTTTTTCCCCEEEECTTC-CEECSSTTTTCSSCCEEEECCTTC-EEC------SCTTTTCTTCCEEEECSSEEC---T
T ss_pred eehhhcccCCCceEEECCCc-eecccccccccccceeEEcCCCcc-eee------ccccccccccceeccCceeec---c
Confidence 22333344566666665433 324555666666666666665532 222 234566666666666554332 1
Q ss_pred hhhhhccccccEEecCCCccCCCCCccccCCCCCCEEEccCCcCccccchhhhcCCCCCeEEcccCcCCCCCCccccccc
Q 005045 251 ISIANLSTHLRRLTMGENLMHGNIPVGIGNLVNLNLLGLEGNNLSGSVPEVIGRLNKLEGLGLNVNKFSGLIPSSLGNLT 330 (717)
Q Consensus 251 ~~~~~~~~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~ 330 (717)
..+... .+|+.+.+.++ ++.+...+|.++.+|+.++|..+ ++.+...+|.++.+|+.+++..| ++.+...+|.+++
T Consensus 291 ~~F~~~-~~L~~i~l~~~-i~~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~C~ 366 (394)
T 4fs7_A 291 KTFYGC-SSLTEVKLLDS-VKFIGEEAFESCTSLVSIDLPYL-VEEIGKRSFRGCTSLSNINFPLS-LRKIGANAFQGCI 366 (394)
T ss_dssp TTTTTC-TTCCEEEECTT-CCEECTTTTTTCTTCCEECCCTT-CCEECTTTTTTCTTCCEECCCTT-CCEECTTTBTTCT
T ss_pred cccccc-ccccccccccc-cceechhhhcCCCCCCEEEeCCc-ccEEhHHhccCCCCCCEEEECcc-ccEehHHHhhCCC
Confidence 223333 46666666554 44455566666667777766533 55455566666677777766655 5556666666666
Q ss_pred ccceeecccccccccCCcCccCcCCCce
Q 005045 331 ILTRLWMEENRLEGSIPPSLGNCQKLLV 358 (717)
Q Consensus 331 ~L~~L~L~~N~l~~~~p~~~~~l~~L~~ 358 (717)
+|+.+++..+ ++ .+..+|.++++|+.
T Consensus 367 ~L~~i~lp~~-~~-~~~~~F~~c~~L~~ 392 (394)
T 4fs7_A 367 NLKKVELPKR-LE-QYRYDFEDTTKFKW 392 (394)
T ss_dssp TCCEEEEEGG-GG-GGGGGBCTTCEEEE
T ss_pred CCCEEEECCC-CE-EhhheecCCCCCcE
Confidence 7777766544 22 23445666666654
No 391
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.64 E-value=3.3e-16 Score=146.82 Aligned_cols=133 Identities=14% Similarity=0.143 Sum_probs=85.5
Q ss_pred CCcCCCCCCEEECCCCcccccCCcCCCCCC-CCCEEEccCccccccCCccccCCCCCCEEeccCCcCcccCChhhhccCC
Q 005045 29 NLSHCTELRSFEASVNDFVGQIPNQLSSLT-KLEIIGLGGSNLTGNVPAWIGNFSSLKALSLAWNNLRGSIPNELGQLSG 107 (717)
Q Consensus 29 ~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~-~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~ 107 (717)
.+..+++|+.|++++|.++ .+|. +..+. +|++|+|++|.|++. ..|..+++|++|+|++|+|++..+..|..+++
T Consensus 14 ~~~~~~~L~~L~l~~n~l~-~i~~-~~~~~~~L~~L~Ls~N~l~~~--~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~ 89 (176)
T 1a9n_A 14 QYTNAVRDRELDLRGYKIP-VIEN-LGATLDQFDAIDFSDNEIRKL--DGFPLLRRLKTLLVNNNRICRIGEGLDQALPD 89 (176)
T ss_dssp EEECTTSCEEEECTTSCCC-SCCC-GGGGTTCCSEEECCSSCCCEE--CCCCCCSSCCEEECCSSCCCEECSCHHHHCTT
T ss_pred hcCCcCCceEEEeeCCCCc-hhHH-hhhcCCCCCEEECCCCCCCcc--cccccCCCCCEEECCCCcccccCcchhhcCCC
Confidence 3566677777777777777 4444 44443 777777777777743 45777777777777777777555555677777
Q ss_pred CCeEeccCCCCCCCCCc--cccCCCCccEEEcccCcccccCCcc---cccCCCCcceeecccccc
Q 005045 108 LGFFTLYGNFISGIIPS--SIYNISSIYYFSVTQNQLHGQLPTD---VGLTLPNLKIFAGAVNYF 167 (717)
Q Consensus 108 L~~L~L~~N~i~~~~~~--~~~~l~~L~~L~L~~N~l~~~l~~~---~~~~l~~L~~L~l~~n~l 167 (717)
|++|+|++|.|+. .|. .+..+++|+.|++++|.++ .+|.. ++..+++|+.|++++|.+
T Consensus 90 L~~L~L~~N~i~~-~~~~~~l~~l~~L~~L~l~~N~i~-~~~~~~~~~~~~l~~L~~Ld~~~n~~ 152 (176)
T 1a9n_A 90 LTELILTNNSLVE-LGDLDPLASLKSLTYLCILRNPVT-NKKHYRLYVIYKVPQVRVLDFQKVKL 152 (176)
T ss_dssp CCEEECCSCCCCC-GGGGGGGGGCTTCCEEECCSSGGG-GSTTHHHHHHHHCTTCSEETTEECCH
T ss_pred CCEEECCCCcCCc-chhhHhhhcCCCCCEEEecCCCCC-CcHhHHHHHHHHCCccceeCCCcCCH
Confidence 7777777777763 343 6677777777777777776 45543 233444444444444443
No 392
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.60 E-value=1.1e-15 Score=143.29 Aligned_cols=129 Identities=16% Similarity=0.234 Sum_probs=112.3
Q ss_pred cceecEEEcCCCcCcCCCCcCCcCCC-CCCEEECCCCcccccCCcCCCCCCCCCEEEccCccccccCCccccCCCCCCEE
Q 005045 9 HLMTQDLNLTYNYLSGKIPTNLSHCT-ELRSFEASVNDFVGQIPNQLSSLTKLEIIGLGGSNLTGNVPAWIGNFSSLKAL 87 (717)
Q Consensus 9 ~~~~~~L~L~~n~l~~~~~~~~~~l~-~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L 87 (717)
...+++|+|++|+++. +|. +..+. +|++|+|++|.+++. ..|..+++|++|+|++|.|++..+..|..+++|++|
T Consensus 18 ~~~L~~L~l~~n~l~~-i~~-~~~~~~~L~~L~Ls~N~l~~~--~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L 93 (176)
T 1a9n_A 18 AVRDRELDLRGYKIPV-IEN-LGATLDQFDAIDFSDNEIRKL--DGFPLLRRLKTLLVNNNRICRIGEGLDQALPDLTEL 93 (176)
T ss_dssp TTSCEEEECTTSCCCS-CCC-GGGGTTCCSEEECCSSCCCEE--CCCCCCSSCCEEECCSSCCCEECSCHHHHCTTCCEE
T ss_pred cCCceEEEeeCCCCch-hHH-hhhcCCCCCEEECCCCCCCcc--cccccCCCCCEEECCCCcccccCcchhhcCCCCCEE
Confidence 3478999999999994 565 55554 999999999999965 579999999999999999996655666999999999
Q ss_pred eccCCcCcccCCh--hhhccCCCCeEeccCCCCCCCCCc----cccCCCCccEEEcccCccc
Q 005045 88 SLAWNNLRGSIPN--ELGQLSGLGFFTLYGNFISGIIPS----SIYNISSIYYFSVTQNQLH 143 (717)
Q Consensus 88 ~L~~n~l~~~~~~--~~~~l~~L~~L~L~~N~i~~~~~~----~~~~l~~L~~L~L~~N~l~ 143 (717)
+|++|+|+ .+|. .+..+++|+.|+|++|.+.. .|. .+..+++|+.||+++|.+.
T Consensus 94 ~L~~N~i~-~~~~~~~l~~l~~L~~L~l~~N~i~~-~~~~~~~~~~~l~~L~~Ld~~~n~~~ 153 (176)
T 1a9n_A 94 ILTNNSLV-ELGDLDPLASLKSLTYLCILRNPVTN-KKHYRLYVIYKVPQVRVLDFQKVKLK 153 (176)
T ss_dssp ECCSCCCC-CGGGGGGGGGCTTCCEEECCSSGGGG-STTHHHHHHHHCTTCSEETTEECCHH
T ss_pred ECCCCcCC-cchhhHhhhcCCCCCEEEecCCCCCC-cHhHHHHHHHHCCccceeCCCcCCHH
Confidence 99999998 5665 89999999999999999984 455 4999999999999999986
No 393
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=99.59 E-value=6.5e-18 Score=161.83 Aligned_cols=106 Identities=21% Similarity=0.275 Sum_probs=52.1
Q ss_pred CCCCCEEECCCCcccccCCc------CCCCCCCCCEEEccCccccccCCccccCCCCCCEEeccCCcCcccCChhhhccC
Q 005045 33 CTELRSFEASVNDFVGQIPN------QLSSLTKLEIIGLGGSNLTGNVPAWIGNFSSLKALSLAWNNLRGSIPNELGQLS 106 (717)
Q Consensus 33 l~~L~~L~L~~n~l~~~~p~------~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~ 106 (717)
...++.++++.+.+.+.+|. .|..+++|++|+|++|.+++ +| .+..+++|++|+|++|+|+ .+|..+..++
T Consensus 17 ~~~l~~l~l~~~~l~~~~~~l~~l~~~~~~l~~L~~L~ls~n~l~~-l~-~~~~l~~L~~L~l~~n~l~-~l~~~~~~~~ 93 (198)
T 1ds9_A 17 RKSVVATEAEKVELHGMIPPIEKMDATLSTLKACKHLALSTNNIEK-IS-SLSGMENLRILSLGRNLIK-KIENLDAVAD 93 (198)
T ss_dssp TTCCCCTTCSEEECCBCCTTCCCCHHHHHHTTTCSEEECSEEEESC-CC-CHHHHTTCCEEEEEEEEEC-SCSSHHHHHH
T ss_pred cccccCcchheeEeccccCcHhhhhHHHhcCCCCCEEECCCCCCcc-cc-ccccCCCCCEEECCCCCcc-cccchhhcCC
Confidence 34445555555555544443 44455555555555555552 34 4455555555555555555 3444444445
Q ss_pred CCCeEeccCCCCCCCCCccccCCCCccEEEcccCccc
Q 005045 107 GLGFFTLYGNFISGIIPSSIYNISSIYYFSVTQNQLH 143 (717)
Q Consensus 107 ~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~ 143 (717)
+|++|+|++|+++++ | .+..+++|++|+|++|+++
T Consensus 94 ~L~~L~L~~N~l~~l-~-~~~~l~~L~~L~l~~N~i~ 128 (198)
T 1ds9_A 94 TLEELWISYNQIASL-S-GIEKLVNLRVLYMSNNKIT 128 (198)
T ss_dssp HCSEEEEEEEECCCH-H-HHHHHHHSSEEEESEEECC
T ss_pred cCCEEECcCCcCCcC-C-ccccCCCCCEEECCCCcCC
Confidence 555555555555432 2 3444445555555555444
No 394
>4gyi_A RIO2 kinase; protein kinase, ADP complex, phosphoaspartate, acyl-phosphat ribosome biogenesis, Ser/Thr protein kinase; HET: PHD ADP; 2.20A {Chaetomium thermophilum} PDB: 4gyg_A
Probab=99.58 E-value=1.1e-15 Score=158.28 Aligned_cols=137 Identities=17% Similarity=0.176 Sum_probs=101.9
Q ss_pred ccccccccccCcccccceEEEEeCCCchhhhHHhHhhh----------------------hhHHHHHHHHHHHHhcCCCC
Q 005045 388 TDNFSKENLIGTGSFGSVYKGTLGDGTIVAIKVLKLQQ----------------------QGALKSFIDECNALKSTRHR 445 (717)
Q Consensus 388 ~~~y~~~~~ig~g~~g~v~~~~~~~~~~vavK~~~~~~----------------------~~~~~~~~~e~~~l~~l~h~ 445 (717)
..=|++...||+|++|.||.|..++|+.||||+++... .........|...+.++.+.
T Consensus 94 g~iY~I~~~IG~Gk~a~VY~a~d~~G~~vAvKi~r~~~~sfr~v~~~r~~~~~~~~~~~~~~~rl~A~kE~~nL~rL~~~ 173 (397)
T 4gyi_A 94 KDVYSVGSRIGVGKESDIMIVADEKGKQKVLKIHRLGRISFRTVKANRDYLRNRSTGSWMYLSRLAAIKEFAFMKALYEE 173 (397)
T ss_dssp TSCSEEEEEEEECSSEEEEEEECTTCCEEEEEEECTTEECCCCCC--CEECTTSCHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred CCEEEecCEeeeCCceEEEEEECCCCCEEEEEEEecccccHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHHHhc
Confidence 33499999999999999999999899999999864321 00112234577777777444
Q ss_pred ce--eEEEEeeccccCCCCceEEEEEecCCCCChhhhccCCCCCcccccccCHHHHHHHHHHHHHHHHHHHhcCCCCeee
Q 005045 446 NI--LRVITACSSVDLEGNDFKALVFEFMSNGNLDQWLHPSPAEHYQFKKLSVIQRLNIAIDVASALDYLHHHCDTPIAH 523 (717)
Q Consensus 446 ni--~~~~~~~~~~~~~~~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~i~~~i~~~l~~LH~~~~~~ivH 523 (717)
.+ ...++. ...++||||++|+++.++.... ....++.||+.+|.+||++ |+||
T Consensus 174 gv~vp~p~~~---------~~~~LVME~i~G~~L~~l~~~~-------------~~~~l~~qll~~l~~lH~~---gIVH 228 (397)
T 4gyi_A 174 GFPVPEPIAQ---------SRHTIVMSLVDALPMRQVSSVP-------------DPASLYADLIALILRLAKH---GLIH 228 (397)
T ss_dssp TCSCCCEEEE---------ETTEEEEECCSCEEGGGCCCCS-------------CHHHHHHHHHHHHHHHHHT---TEEC
T ss_pred CCCCCeeeec---------cCceEEEEecCCccHhhhcccH-------------HHHHHHHHHHHHHHHHHHC---CCcC
Confidence 33 222222 1237999999998887654321 2356889999999999998 9999
Q ss_pred cCCCCCCEEeCCCC----------ceEEeeeccchh
Q 005045 524 CDLKPSNVLLDKDM----------TAHVGDFGLAKF 549 (717)
Q Consensus 524 ~dlkp~NIll~~~~----------~~kl~Dfg~~~~ 549 (717)
|||||.|||++++| .+.|+||+-+..
T Consensus 229 rDLKp~NILl~~dgd~~d~~~~~~~~~iID~~Q~V~ 264 (397)
T 4gyi_A 229 GDFNEFNILIREEKDAEDPSSITLTPIIIXFPQMVS 264 (397)
T ss_dssp SCCSTTSEEEEEEECSSCTTSEEEEEEECCCTTCEE
T ss_pred CCCCHHHEEEeCCCCcccccccccceEEEEeCCccc
Confidence 99999999998776 389999997764
No 395
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=99.56 E-value=1.2e-14 Score=134.96 Aligned_cols=109 Identities=24% Similarity=0.313 Sum_probs=82.7
Q ss_pred ccEEecCCCccCCCCCccccCCCCCCEEEccCCcCccccchhhhcCCCCCeEEcccCcCCCCCCcccccccccceeeccc
Q 005045 260 LRRLTMGENLMHGNIPVGIGNLVNLNLLGLEGNNLSGSVPEVIGRLNKLEGLGLNVNKFSGLIPSSLGNLTILTRLWMEE 339 (717)
Q Consensus 260 L~~L~l~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~ 339 (717)
.+.+++++|.++. +|..+. ++|+.|+|++|+|++..|..|.++++|++|+|++|+|+++.+..|.++++|++|+|++
T Consensus 11 ~~~l~~s~n~l~~-ip~~~~--~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~ 87 (170)
T 3g39_A 11 GTTVDCSGKSLAS-VPTGIP--TTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLND 87 (170)
T ss_dssp TTEEECTTSCCSS-CCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred CCEEEeCCCCcCc-cCccCC--CCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECCC
Confidence 4566666666663 444442 6778888888888877777788888888888888888877777778888888888888
Q ss_pred ccccccCCcCccCcCCCceEEeecccCCCCCC
Q 005045 340 NRLEGSIPPSLGNCQKLLVLNLSSNDLNGTIP 371 (717)
Q Consensus 340 N~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p 371 (717)
|+|++..+..|..+++|+.|+|++|+|++.++
T Consensus 88 N~l~~~~~~~~~~l~~L~~L~L~~N~~~c~c~ 119 (170)
T 3g39_A 88 NQLKSIPRGAFDNLKSLTHIWLLNNPWDCACS 119 (170)
T ss_dssp SCCCCCCTTTTTTCTTCCEEECCSSCBCTTBG
T ss_pred CccCEeCHHHhcCCCCCCEEEeCCCCCCCCch
Confidence 88886555668888888888888888887665
No 396
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=99.56 E-value=1.4e-13 Score=146.67 Aligned_cols=321 Identities=10% Similarity=0.066 Sum_probs=209.0
Q ss_pred cCCCCcCCcCCC-CCCEEECCCCcccccCCcCCCCCCCCCEEEccCcc---ccccCCccccCCCCCCEEeccCCcCcccC
Q 005045 23 SGKIPTNLSHCT-ELRSFEASVNDFVGQIPNQLSSLTKLEIIGLGGSN---LTGNVPAWIGNFSSLKALSLAWNNLRGSI 98 (717)
Q Consensus 23 ~~~~~~~~~~l~-~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~---l~~~~p~~~~~l~~L~~L~L~~n~l~~~~ 98 (717)
+.+-..+|.++. .|+.+.+-.+ ++.+-..+|.++++|+.+.+..|. ++.....+|..+.+|+.+.+..+ ++.+.
T Consensus 52 t~Ig~~aF~~~~~~L~sI~iP~s-vt~Ig~~AF~~C~~L~~i~~~~n~p~~l~~Ig~~aF~~c~~L~~i~~~~~-~~~I~ 129 (394)
T 4gt6_A 52 SKIGDRVFCNYKYVLTSVQIPDT-VTEIGSNAFYNCTSLKRVTIQDNKPSCVKKIGRQAFMFCSELTDIPILDS-VTEID 129 (394)
T ss_dssp EEECTTTTTTCCSCCCEEEECTT-CCEECTTTTTTCTTCCEEEEGGGCCCCCCEECTTTTTTCTTCCBCGGGTT-CSEEC
T ss_pred eEcCHhhccCCCCcCEEEEECCC-eeEEhHHHhhCCccCceEeecCCCCCeeeEechhhchhcccceeeccCCc-cceeh
Confidence 434456777774 5888888754 665667778888888888887764 66455667888888888777655 55466
Q ss_pred ChhhhccCCCCeEeccCCCCCCCCCccccCCCCccEEEcccCcccccCCcccccCCCCcceeecccccccccCCccCCCC
Q 005045 99 PNELGQLSGLGFFTLYGNFISGIIPSSIYNISSIYYFSVTQNQLHGQLPTDVGLTLPNLKIFAGAVNYFTGSIPVSLSNA 178 (717)
Q Consensus 99 ~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~~l~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l 178 (717)
..+|.++.+|+.+.+..+ +..+...+|.++.+|+.+.+..+ ++ .++...|. ..+|+.+.+..+-.. ....+|.++
T Consensus 130 ~~aF~~c~~L~~i~lp~~-~~~I~~~~F~~c~~L~~i~~~~~-~~-~I~~~aF~-~~~l~~i~ip~~~~~-i~~~af~~c 204 (394)
T 4gt6_A 130 SEAFHHCEELDTVTIPEG-VTSVADGMFSYCYSLHTVTLPDS-VT-AIEERAFT-GTALTQIHIPAKVTR-IGTNAFSEC 204 (394)
T ss_dssp TTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEECCTT-CC-EECTTTTT-TCCCSEEEECTTCCE-ECTTTTTTC
T ss_pred hhhhhhhcccccccccce-eeeecccceecccccccccccce-ee-Eecccccc-ccceeEEEECCcccc-cccchhhhc
Confidence 677888888888888654 34467778888888888888755 44 67777774 456787777665433 566677777
Q ss_pred CCCCEEeccCccccccCCCCcc--------------CCCCCCeeeccccccCCcccCchhhhhhhccCCCCCEEEeecCc
Q 005045 179 SNLQVLDFAENGLTGTIPGNFG--------------SLKDLVRLNFDQNELGSREIGDLNFLKFLANCTSLEVLGLARNS 244 (717)
Q Consensus 179 ~~L~~L~l~~N~l~~~~~~~~~--------------~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~l~~L~~L~L~~N~ 244 (717)
.++.......+... .....+. ....+..+.+. +.++.++ ...|.++..|+.+.+..+.
T Consensus 205 ~~l~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ip-~~v~~i~------~~aF~~c~~L~~i~lp~~~ 276 (394)
T 4gt6_A 205 FALSTITSDSESYP-AIDNVLYEKSANGDYALIRYPSQREDPAFKIP-NGVARIE------THAFDSCAYLASVKMPDSV 276 (394)
T ss_dssp TTCCEEEECCSSSC-BSSSCEEEECTTSCEEEEECCTTCCCSEEECC-TTEEEEC------TTTTTTCSSCCEEECCTTC
T ss_pred cccceecccccccc-cccceeecccccccccccccccccccceEEcC-CcceEcc------cceeeecccccEEeccccc
Confidence 88887776665544 2222111 11223333332 2233333 3467788888888887665
Q ss_pred ccCcCchhhhhccccccEEecCCCccCCCCCccccCCCCCCEEEccCCcCccccchhhhcCCCCCeEEcccCcCCCCCCc
Q 005045 245 FGGEMPISIANLSTHLRRLTMGENLMHGNIPVGIGNLVNLNLLGLEGNNLSGSVPEVIGRLNKLEGLGLNVNKFSGLIPS 324 (717)
Q Consensus 245 l~~~~p~~~~~~~~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~ 324 (717)
.. .....|... +.|+.+.+.. .++.+...+|.++.+|+.++|..+ ++.+...+|.++.+|+.+.+..+ ++.+...
T Consensus 277 ~~-I~~~aF~~c-~~L~~i~l~~-~i~~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~C~~L~~i~ip~s-v~~I~~~ 351 (394)
T 4gt6_A 277 VS-IGTGAFMNC-PALQDIEFSS-RITELPESVFAGCISLKSIDIPEG-ITQILDDAFAGCEQLERIAIPSS-VTKIPES 351 (394)
T ss_dssp CE-ECTTTTTTC-TTCCEEECCT-TCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEEECTT-CCBCCGG
T ss_pred ce-ecCcccccc-cccccccCCC-cccccCceeecCCCCcCEEEeCCc-ccEehHhHhhCCCCCCEEEECcc-cCEEhHh
Confidence 54 445555555 4788888863 455466677888888888888754 66566677888888888888654 6667777
Q ss_pred ccccccccceeecccccccccCCcCccCcCCCceEEeecccC
Q 005045 325 SLGNLTILTRLWMEENRLEGSIPPSLGNCQKLLVLNLSSNDL 366 (717)
Q Consensus 325 ~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~l~~N~l 366 (717)
+|.++++|+.+++.+|.... ..+..+.+|+.+.+..|.+
T Consensus 352 aF~~C~~L~~i~~~~~~~~~---~~~~~~~~L~~i~i~~~~~ 390 (394)
T 4gt6_A 352 AFSNCTALNNIEYSGSRSQW---NAISTDSGLQNLPVAPGSI 390 (394)
T ss_dssp GGTTCTTCCEEEESSCHHHH---HTCBCCCCC----------
T ss_pred HhhCCCCCCEEEECCceeeh---hhhhccCCCCEEEeCCCCE
Confidence 88888888888888876542 4566777788777776654
No 397
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=99.56 E-value=4.8e-17 Score=155.78 Aligned_cols=136 Identities=21% Similarity=0.187 Sum_probs=92.4
Q ss_pred CCCCCCCEEEccCccccccCCc------cccCCCCCCEEeccCCcCcccCChhhhccCCCCeEeccCCCCCCCCCccccC
Q 005045 55 SSLTKLEIIGLGGSNLTGNVPA------WIGNFSSLKALSLAWNNLRGSIPNELGQLSGLGFFTLYGNFISGIIPSSIYN 128 (717)
Q Consensus 55 ~~l~~L~~L~L~~n~l~~~~p~------~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~ 128 (717)
.....++.++++.+.+++..|. .+..+++|++|+|++|++++ +| .|.++++|++|+|++|.++ .+|..+..
T Consensus 15 ~~~~~l~~l~l~~~~l~~~~~~l~~l~~~~~~l~~L~~L~ls~n~l~~-l~-~~~~l~~L~~L~l~~n~l~-~l~~~~~~ 91 (198)
T 1ds9_A 15 EERKSVVATEAEKVELHGMIPPIEKMDATLSTLKACKHLALSTNNIEK-IS-SLSGMENLRILSLGRNLIK-KIENLDAV 91 (198)
T ss_dssp HHTTCCCCTTCSEEECCBCCTTCCCCHHHHHHTTTCSEEECSEEEESC-CC-CHHHHTTCCEEEEEEEEEC-SCSSHHHH
T ss_pred HhcccccCcchheeEeccccCcHhhhhHHHhcCCCCCEEECCCCCCcc-cc-ccccCCCCCEEECCCCCcc-cccchhhc
Confidence 3445666666777666666555 77778888888888888874 55 7788888888888888887 45666777
Q ss_pred CCCccEEEcccCcccccCCcccccCCCCcceeecccccccccCC-ccCCCCCCCCEEeccCccccccCC
Q 005045 129 ISSIYYFSVTQNQLHGQLPTDVGLTLPNLKIFAGAVNYFTGSIP-VSLSNASNLQVLDFAENGLTGTIP 196 (717)
Q Consensus 129 l~~L~~L~L~~N~l~~~l~~~~~~~l~~L~~L~l~~n~l~~~~~-~~~~~l~~L~~L~l~~N~l~~~~~ 196 (717)
+++|++|+|++|+++ .+| .+..+++|+.|++++|.++...+ ..+..+++|++|++++|.+++..|
T Consensus 92 ~~~L~~L~L~~N~l~-~l~--~~~~l~~L~~L~l~~N~i~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~ 157 (198)
T 1ds9_A 92 ADTLEELWISYNQIA-SLS--GIEKLVNLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLYNDYK 157 (198)
T ss_dssp HHHCSEEEEEEEECC-CHH--HHHHHHHSSEEEESEEECCCHHHHHHHTTTTTCSEEEECSCHHHHHHH
T ss_pred CCcCCEEECcCCcCC-cCC--ccccCCCCCEEECCCCcCCchhHHHHHhcCCCCCEEEecCCccccccc
Confidence 778888888888887 444 23356666666666666664322 345666666666666666654444
No 398
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=99.55 E-value=1.8e-14 Score=133.80 Aligned_cols=105 Identities=18% Similarity=0.221 Sum_probs=60.8
Q ss_pred CCEEECCCCcccccCCcCCCCCCCCCEEEccCccccccCCccccCCCCCCEEeccCCcCcccCChhhhccCCCCeEeccC
Q 005045 36 LRSFEASVNDFVGQIPNQLSSLTKLEIIGLGGSNLTGNVPAWIGNFSSLKALSLAWNNLRGSIPNELGQLSGLGFFTLYG 115 (717)
Q Consensus 36 L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~ 115 (717)
.+.+++++|.++ .+|..+. ++|++|+|++|.|++..|..|..+++|++|+|++|+|++..+..|.++++|++|+|++
T Consensus 11 ~~~l~~s~n~l~-~ip~~~~--~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~ 87 (170)
T 3g39_A 11 GTTVDCSGKSLA-SVPTGIP--TTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLND 87 (170)
T ss_dssp TTEEECTTSCCS-SCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred CCEEEeCCCCcC-ccCccCC--CCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECCC
Confidence 345555555555 3444332 4555566666666555555555666666666666666655555556666666666666
Q ss_pred CCCCCCCCccccCCCCccEEEcccCccc
Q 005045 116 NFISGIIPSSIYNISSIYYFSVTQNQLH 143 (717)
Q Consensus 116 N~i~~~~~~~~~~l~~L~~L~L~~N~l~ 143 (717)
|+|+++.+..|.++++|++|+|++|.++
T Consensus 88 N~l~~~~~~~~~~l~~L~~L~L~~N~~~ 115 (170)
T 3g39_A 88 NQLKSIPRGAFDNLKSLTHIWLLNNPWD 115 (170)
T ss_dssp SCCCCCCTTTTTTCTTCCEEECCSSCBC
T ss_pred CccCEeCHHHhcCCCCCCEEEeCCCCCC
Confidence 6666555555666666666666666665
No 399
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=99.54 E-value=3.1e-14 Score=132.74 Aligned_cols=104 Identities=16% Similarity=0.204 Sum_probs=62.6
Q ss_pred CEEECCCCcccccCCcCCCCCCCCCEEEccCccccccCCccccCCCCCCEEeccCCcCcccCChhhhccCCCCeEeccCC
Q 005045 37 RSFEASVNDFVGQIPNQLSSLTKLEIIGLGGSNLTGNVPAWIGNFSSLKALSLAWNNLRGSIPNELGQLSGLGFFTLYGN 116 (717)
Q Consensus 37 ~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N 116 (717)
+.+++++|+++ .+|..+. ++|++|+|++|+|++..|..|.++++|++|+|++|+|++..+..|.++++|++|+|++|
T Consensus 15 ~~l~~~~n~l~-~iP~~~~--~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N 91 (174)
T 2r9u_A 15 TLVNCQNIRLA-SVPAGIP--TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDN 91 (174)
T ss_dssp SEEECCSSCCS-SCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred cEEEeCCCCCC-ccCCCcC--CCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECCCC
Confidence 45566666555 4554443 55666666666666555555666666666666666666544445566666666666666
Q ss_pred CCCCCCCccccCCCCccEEEcccCccc
Q 005045 117 FISGIIPSSIYNISSIYYFSVTQNQLH 143 (717)
Q Consensus 117 ~i~~~~~~~~~~l~~L~~L~L~~N~l~ 143 (717)
+|+++.+..|..+++|++|+|++|.+.
T Consensus 92 ~l~~l~~~~~~~l~~L~~L~L~~N~~~ 118 (174)
T 2r9u_A 92 HLKSIPRGAFDNLKSLTHIYLYNNPWD 118 (174)
T ss_dssp CCCCCCTTTTTTCTTCSEEECCSSCBC
T ss_pred ccceeCHHHhccccCCCEEEeCCCCcc
Confidence 666555555666666666666666665
No 400
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=99.53 E-value=4.5e-14 Score=131.60 Aligned_cols=107 Identities=19% Similarity=0.220 Sum_probs=97.1
Q ss_pred eecEEEcCCCcCcCCCCcCCcCCCCCCEEECCCCcccccCCcCCCCCCCCCEEEccCccccccCCccccCCCCCCEEecc
Q 005045 11 MTQDLNLTYNYLSGKIPTNLSHCTELRSFEASVNDFVGQIPNQLSSLTKLEIIGLGGSNLTGNVPAWIGNFSSLKALSLA 90 (717)
Q Consensus 11 ~~~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~ 90 (717)
.-+.+++++|+++ .+|..+. ++|++|+|++|.|++..|..|.++++|++|+|++|+|++..+..|..+++|++|+|+
T Consensus 13 ~~~~l~~~~n~l~-~iP~~~~--~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~ 89 (174)
T 2r9u_A 13 DQTLVNCQNIRLA-SVPAGIP--TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLN 89 (174)
T ss_dssp CSSEEECCSSCCS-SCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECC
T ss_pred CCcEEEeCCCCCC-ccCCCcC--CCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECC
Confidence 3478999999998 6787665 899999999999998889999999999999999999997666678999999999999
Q ss_pred CCcCcccCChhhhccCCCCeEeccCCCCCC
Q 005045 91 WNNLRGSIPNELGQLSGLGFFTLYGNFISG 120 (717)
Q Consensus 91 ~n~l~~~~~~~~~~l~~L~~L~L~~N~i~~ 120 (717)
+|+|++..+..|..+++|++|+|++|.+..
T Consensus 90 ~N~l~~l~~~~~~~l~~L~~L~L~~N~~~c 119 (174)
T 2r9u_A 90 DNHLKSIPRGAFDNLKSLTHIYLYNNPWDC 119 (174)
T ss_dssp SSCCCCCCTTTTTTCTTCSEEECCSSCBCT
T ss_pred CCccceeCHHHhccccCCCEEEeCCCCccc
Confidence 999997777779999999999999999983
No 401
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=99.47 E-value=3.5e-12 Score=135.86 Aligned_cols=308 Identities=9% Similarity=0.053 Sum_probs=232.2
Q ss_pred ccccCCcCCCCCC-CCCEEEccCccccccCCccccCCCCCCEEeccCCc---CcccCChhhhccCCCCeEeccCCCCCCC
Q 005045 46 FVGQIPNQLSSLT-KLEIIGLGGSNLTGNVPAWIGNFSSLKALSLAWNN---LRGSIPNELGQLSGLGFFTLYGNFISGI 121 (717)
Q Consensus 46 l~~~~p~~~~~l~-~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~---l~~~~~~~~~~l~~L~~L~L~~N~i~~~ 121 (717)
++.+-..+|.+.. .|+.+.+..+ ++.+-..+|.++.+|+.+.+..|. ++.+...+|.++.+|+.+.+..+ ++.+
T Consensus 51 Vt~Ig~~aF~~~~~~L~sI~iP~s-vt~Ig~~AF~~C~~L~~i~~~~n~p~~l~~Ig~~aF~~c~~L~~i~~~~~-~~~I 128 (394)
T 4gt6_A 51 VSKIGDRVFCNYKYVLTSVQIPDT-VTEIGSNAFYNCTSLKRVTIQDNKPSCVKKIGRQAFMFCSELTDIPILDS-VTEI 128 (394)
T ss_dssp EEEECTTTTTTCCSCCCEEEECTT-CCEECTTTTTTCTTCCEEEEGGGCCCCCCEECTTTTTTCTTCCBCGGGTT-CSEE
T ss_pred eeEcCHhhccCCCCcCEEEEECCC-eeEEhHHHhhCCccCceEeecCCCCCeeeEechhhchhcccceeeccCCc-ccee
Confidence 4545566788874 6999999765 776778899999999999998874 77677789999999999998766 5557
Q ss_pred CCccccCCCCccEEEcccCcccccCCcccccCCCCcceeecccccccccCCccCCCCCCCCEEeccCccccccCCCCccC
Q 005045 122 IPSSIYNISSIYYFSVTQNQLHGQLPTDVGLTLPNLKIFAGAVNYFTGSIPVSLSNASNLQVLDFAENGLTGTIPGNFGS 201 (717)
Q Consensus 122 ~~~~~~~l~~L~~L~L~~N~l~~~l~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~ 201 (717)
...+|.++.+|+.+.+..+ +. .++...|....+|+.+.+.++ +..+...+|.+ .+|+.+.+..+-.. .....|..
T Consensus 129 ~~~aF~~c~~L~~i~lp~~-~~-~I~~~~F~~c~~L~~i~~~~~-~~~I~~~aF~~-~~l~~i~ip~~~~~-i~~~af~~ 203 (394)
T 4gt6_A 129 DSEAFHHCEELDTVTIPEG-VT-SVADGMFSYCYSLHTVTLPDS-VTAIEERAFTG-TALTQIHIPAKVTR-IGTNAFSE 203 (394)
T ss_dssp CTTTTTTCTTCCEEECCTT-CC-EECTTTTTTCTTCCEEECCTT-CCEECTTTTTT-CCCSEEEECTTCCE-ECTTTTTT
T ss_pred hhhhhhhhcccccccccce-ee-eecccceecccccccccccce-eeEeccccccc-cceeEEEECCcccc-cccchhhh
Confidence 8889999999999999754 44 788889989999999999876 55466666764 67999999876555 77788999
Q ss_pred CCCCCeeeccccccCCcccCchhh-------hhhhccCCCCCEEEeecCcccCcCchhhhhccccccEEecCCCccCCCC
Q 005045 202 LKDLVRLNFDQNELGSREIGDLNF-------LKFLANCTSLEVLGLARNSFGGEMPISIANLSTHLRRLTMGENLMHGNI 274 (717)
Q Consensus 202 l~~L~~L~l~~N~l~~~~~~~~~~-------~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~~~~L~~L~l~~N~l~~~~ 274 (717)
+..+.......+.....+-..... ...+.....+..+.+.. .++.....+|... ..|+.+.+.++... +.
T Consensus 204 c~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ip~-~v~~i~~~aF~~c-~~L~~i~lp~~~~~-I~ 280 (394)
T 4gt6_A 204 CFALSTITSDSESYPAIDNVLYEKSANGDYALIRYPSQREDPAFKIPN-GVARIETHAFDSC-AYLASVKMPDSVVS-IG 280 (394)
T ss_dssp CTTCCEEEECCSSSCBSSSCEEEECTTSCEEEEECCTTCCCSEEECCT-TEEEECTTTTTTC-SSCCEEECCTTCCE-EC
T ss_pred ccccceecccccccccccceeecccccccccccccccccccceEEcCC-cceEcccceeeec-ccccEEecccccce-ec
Confidence 999998887766554433110000 00111223445555433 3332334455555 58999999877654 67
Q ss_pred CccccCCCCCCEEEccCCcCccccchhhhcCCCCCeEEcccCcCCCCCCcccccccccceeecccccccccCCcCccCcC
Q 005045 275 PVGIGNLVNLNLLGLEGNNLSGSVPEVIGRLNKLEGLGLNVNKFSGLIPSSLGNLTILTRLWMEENRLEGSIPPSLGNCQ 354 (717)
Q Consensus 275 ~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~ 354 (717)
..+|.++++|+.+.+. +.++.+...+|.++.+|+.++|..+ ++.+...+|.++.+|+.+.|..+ ++..-..+|.+++
T Consensus 281 ~~aF~~c~~L~~i~l~-~~i~~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~C~~L~~i~ip~s-v~~I~~~aF~~C~ 357 (394)
T 4gt6_A 281 TGAFMNCPALQDIEFS-SRITELPESVFAGCISLKSIDIPEG-ITQILDDAFAGCEQLERIAIPSS-VTKIPESAFSNCT 357 (394)
T ss_dssp TTTTTTCTTCCEEECC-TTCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEEECTT-CCBCCGGGGTTCT
T ss_pred CcccccccccccccCC-CcccccCceeecCCCCcCEEEeCCc-ccEehHhHhhCCCCCCEEEECcc-cCEEhHhHhhCCC
Confidence 7889999999999996 5566577788999999999999865 77778889999999999999755 6645567899999
Q ss_pred CCceEEeecccC
Q 005045 355 KLLVLNLSSNDL 366 (717)
Q Consensus 355 ~L~~L~l~~N~l 366 (717)
+|+.+++.+|..
T Consensus 358 ~L~~i~~~~~~~ 369 (394)
T 4gt6_A 358 ALNNIEYSGSRS 369 (394)
T ss_dssp TCCEEEESSCHH
T ss_pred CCCEEEECCcee
Confidence 999999998754
No 402
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=99.41 E-value=1.1e-14 Score=152.99 Aligned_cols=136 Identities=20% Similarity=0.240 Sum_probs=62.0
Q ss_pred CCCCEEeccCccccccCCCCccC-----CCCCCeeeccccccCCcccCchhhhhhhccCCCCCEEEeecCcccCcCchhh
Q 005045 179 SNLQVLDFAENGLTGTIPGNFGS-----LKDLVRLNFDQNELGSREIGDLNFLKFLANCTSLEVLGLARNSFGGEMPISI 253 (717)
Q Consensus 179 ~~L~~L~l~~N~l~~~~~~~~~~-----l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~ 253 (717)
++|+.|+|++|.++......+.. .++|+.|+|++|.|+.... ......+++|+.|+|++|.+++.....+
T Consensus 72 ~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~-----~~l~~~L~~L~~L~Ls~n~l~~~~~~~L 146 (372)
T 3un9_A 72 SSLRQLNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLASCQLDPAGL-----RTLLPVFLRARKLGLQLNSLGPEACKDL 146 (372)
T ss_dssp TTCCEEECTTSCCCHHHHHHHHHHHSSCSSCEEEEECTTCCCCHHHH-----HHTHHHHHTEEEEECCSSCCCHHHHHHH
T ss_pred hhCCEEEecCCCCCHHHHHHHHHHHhhCCCCceEEEecCCCCCHHHH-----HHHHHHHHhccHhhcCCCCCCHHHHHHH
Confidence 45677777777766433222221 2456666666666544321 1112233455566666665553333333
Q ss_pred hhc----cccccEEecCCCccCCC----CCccccCCCCCCEEEccCCcCcccc----chhhhcCCCCCeEEcccCcCC
Q 005045 254 ANL----STHLRRLTMGENLMHGN----IPVGIGNLVNLNLLGLEGNNLSGSV----PEVIGRLNKLEGLGLNVNKFS 319 (717)
Q Consensus 254 ~~~----~~~L~~L~l~~N~l~~~----~~~~~~~l~~L~~L~L~~N~l~~~~----~~~~~~l~~L~~L~Ls~N~l~ 319 (717)
... .++|++|+|++|.|+.. ++..+..+++|++|+|++|.|+... +..+...++|++|+|++|.++
T Consensus 147 ~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N~i~ 224 (372)
T 3un9_A 147 RDLLLHDQCQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNGAG 224 (372)
T ss_dssp HHHHHSTTCCCCEEECCSSCCHHHHHHHHHHHHHTCSSCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCSSCCC
T ss_pred HHHHHhcCCccceeeCCCCCCChHHHHHHHHHHhcCCCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCCCCCC
Confidence 221 12455555555554321 1222234444555555555544221 223334444555555555444
No 403
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=99.41 E-value=3.1e-15 Score=157.26 Aligned_cols=119 Identities=19% Similarity=0.214 Sum_probs=56.6
Q ss_pred CCCCCEEeccCcccccc----CCCCccCCCCCCeeeccccccCCcccCchhhhhhhccCCCCCEEEeecCcccCcCchhh
Q 005045 178 ASNLQVLDFAENGLTGT----IPGNFGSLKDLVRLNFDQNELGSREIGDLNFLKFLANCTSLEVLGLARNSFGGEMPISI 253 (717)
Q Consensus 178 l~~L~~L~l~~N~l~~~----~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~ 253 (717)
.++|++|+|++|.|+.. ++..+..+++|++|+|++|.|+..+.. .+...+...++|++|+|++|.|++.....+
T Consensus 154 ~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~L~~L~Ls~N~l~~~g~~--~L~~~L~~~~~L~~L~Ls~N~i~~~g~~~l 231 (372)
T 3un9_A 154 QCQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTGLGDEGLE--LLAAQLDRNRQLQELNVAYNGAGDTAALAL 231 (372)
T ss_dssp TCCCCEEECCSSCCHHHHHHHHHHHHHTCSSCCEEECTTSSCHHHHHH--HHHHHGGGCSCCCEEECCSSCCCHHHHHHH
T ss_pred CCccceeeCCCCCCChHHHHHHHHHHhcCCCcCEEeCCCCCCCcHHHH--HHHHHHhcCCCcCeEECCCCCCCHHHHHHH
Confidence 45566666666666531 222234445555555555555443211 112334444455555555555542222121
Q ss_pred hhccccccEEecCCCccCCCCCccccCCCCCCEEEccCCcCccccchhhhcCCC-----CCeEE--cccCcCC
Q 005045 254 ANLSTHLRRLTMGENLMHGNIPVGIGNLVNLNLLGLEGNNLSGSVPEVIGRLNK-----LEGLG--LNVNKFS 319 (717)
Q Consensus 254 ~~~~~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~-----L~~L~--Ls~N~l~ 319 (717)
...+...++|++|+|++|.|+......+..+.. |+.+. +..|.+.
T Consensus 232 ---------------------~~~L~~~~~L~~L~Ls~N~i~~~g~~~L~~~~~~~~~~L~~l~~ll~~~~~~ 283 (372)
T 3un9_A 232 ---------------------ARAAREHPSLELLHLYFNELSSEGRQVLRDLGGAAEGGARVVVSLTEGTAVS 283 (372)
T ss_dssp ---------------------HHHHHHCSSCCEEECTTSSCCHHHHHHHHHCC------CEEECCCC----CH
T ss_pred ---------------------HHHHHhCCCCCEEeccCCCCCHHHHHHHHHHhcCCCccchhhHhhhcCCccC
Confidence 223344567888888888877655555555432 44444 4444443
No 404
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=99.40 E-value=5.8e-13 Score=139.44 Aligned_cols=103 Identities=15% Similarity=0.179 Sum_probs=71.7
Q ss_pred EEECCCC-cccccCCcCCCCCCCCCEEEccC-ccccccCCccccCCCCCCEEeccCCcCcccCChhhhccCCCCeEeccC
Q 005045 38 SFEASVN-DFVGQIPNQLSSLTKLEIIGLGG-SNLTGNVPAWIGNFSSLKALSLAWNNLRGSIPNELGQLSGLGFFTLYG 115 (717)
Q Consensus 38 ~L~L~~n-~l~~~~p~~~~~l~~L~~L~L~~-n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~ 115 (717)
.++++++ +++ .+|. |..+++|++|+|++ |.|++..+..|.+|++|+.|+|++|+|++..|..|.++++|++|+|++
T Consensus 12 ~v~~~~~n~l~-~ip~-l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~ 89 (347)
T 2ifg_A 12 GLRCTRDGALD-SLHH-LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSF 89 (347)
T ss_dssp CEECCSSCCCT-TTTT-SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCS
T ss_pred EEEcCCCCCCC-ccCC-CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCCC
Confidence 4566666 666 4666 77777777777775 777755556677777777777777777766667777777777777777
Q ss_pred CCCCCCCCccccCCCCccEEEcccCccc
Q 005045 116 NFISGIIPSSIYNISSIYYFSVTQNQLH 143 (717)
Q Consensus 116 N~i~~~~~~~~~~l~~L~~L~L~~N~l~ 143 (717)
|+|+++.+..|..++ |+.|+|++|.+.
T Consensus 90 N~l~~~~~~~~~~~~-L~~l~l~~N~~~ 116 (347)
T 2ifg_A 90 NALESLSWKTVQGLS-LQELVLSGNPLH 116 (347)
T ss_dssp SCCSCCCSTTTCSCC-CCEEECCSSCCC
T ss_pred CccceeCHHHcccCC-ceEEEeeCCCcc
Confidence 777766666666555 777777777775
No 405
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=99.33 E-value=9.9e-11 Score=123.97 Aligned_cols=288 Identities=13% Similarity=0.094 Sum_probs=131.8
Q ss_pred CcCCCCCCEEECCCCcccccCCcCCCCCCCCCEEEccCccccccCCccccCCCCCCEEeccCCcCcccCChhhhccCCCC
Q 005045 30 LSHCTELRSFEASVNDFVGQIPNQLSSLTKLEIIGLGGSNLTGNVPAWIGNFSSLKALSLAWNNLRGSIPNELGQLSGLG 109 (717)
Q Consensus 30 ~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~ 109 (717)
+....+|+.+.+.. .++.+-..+|.++.+|+.++|..+ ++.+...+|.+. +|+.+.+..+ ++.+...+|... +|+
T Consensus 42 ~~~~~~i~~v~ip~-~vt~Ig~~aF~~C~~L~~I~lp~~-v~~Ig~~aF~~c-~l~~i~~~~~-l~~I~~~aF~~~-~L~ 116 (379)
T 4h09_A 42 YKDRDRISEVRVNS-GITSIGEANFNSCYNMTKVTVAST-VTSIGDGAFADT-KLQSYTGMER-VKKFGDYVFQGT-DLD 116 (379)
T ss_dssp GGGGGGCSEEEECT-TEEEECTTTTTTCTTCCEEEECTT-CCEECTTTTTTC-CCCEEEECTT-CCEECTTTTTTC-CCS
T ss_pred cccccCCEEEEeCC-CccChHHHHhhCCCCCCEEEeCCc-ceEechhhhcCC-CCceEECCce-eeEeccceeccC-Ccc
Confidence 44555666666653 355455556677777777777543 554445556554 5666665433 443444455443 566
Q ss_pred eEeccCCCCCCCCCccccCCCCccEEEcccCcccccCCcccccCCCCcceeecccccccc------------cCCccCCC
Q 005045 110 FFTLYGNFISGIIPSSIYNISSIYYFSVTQNQLHGQLPTDVGLTLPNLKIFAGAVNYFTG------------SIPVSLSN 177 (717)
Q Consensus 110 ~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~~l~~~~~~~l~~L~~L~l~~n~l~~------------~~~~~~~~ 177 (717)
.+.+..+- ..+...+|.+. +|+.+.+..+ ++ .+....|....+++.+.+..+.... .....+..
T Consensus 117 ~i~lp~~~-~~i~~~~F~~~-~l~~~~~~~~-v~-~i~~~~f~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 192 (379)
T 4h09_A 117 DFEFPGAT-TEIGNYIFYNS-SVKRIVIPKS-VT-TIKDGIGYKAENLEKIEVSSNNKNYVAENYVLYNKNKTILESYPA 192 (379)
T ss_dssp EEECCTTC-CEECTTTTTTC-CCCEEEECTT-CC-EECSCTTTTCTTCCEEEECTTCSSEEEETTEEEETTSSEEEECCT
T ss_pred cccCCCcc-ccccccccccc-eeeeeeccce-ee-ccccchhcccccccccccccccceeecccceecccccceeccccc
Confidence 66665543 22444444443 4444444332 33 4444555555555555444332211 11122333
Q ss_pred CCCCCEEeccCccccccCCCCccCCCCCCeeeccccccCCcccCchhhhhhhccCCCCCEEEeecCcccCcCchhhhhcc
Q 005045 178 ASNLQVLDFAENGLTGTIPGNFGSLKDLVRLNFDQNELGSREIGDLNFLKFLANCTSLEVLGLARNSFGGEMPISIANLS 257 (717)
Q Consensus 178 l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~~ 257 (717)
...+..+.+..+.-. .....+....+|+.+.+..+ +..++ ...|.++..|+.+.+..+ ++......+...
T Consensus 193 ~~~~~~~~~~~~~~~-i~~~~f~~~~~l~~i~~~~~-~~~i~------~~~f~~~~~L~~i~lp~~-v~~I~~~aF~~~- 262 (379)
T 4h09_A 193 AKTGTEFTIPSTVKT-VTAYGFSYGKNLKKITITSG-VTTLG------DGAFYGMKALDEIAIPKN-VTSIGSFLLQNC- 262 (379)
T ss_dssp TCCCSEEECCTTCCE-ECTTTTTTCSSCSEEECCTT-CCEEC------TTTTTTCSSCCEEEECTT-CCEECTTTTTTC-
T ss_pred cccccccccccceeE-Eeecccccccccceeeeccc-eeEEc------cccccCCccceEEEcCCC-ccEeCcccccee-
Confidence 334444443333222 33444445555555555433 22222 233445555555555443 331222222222
Q ss_pred ccccEEecCCCccCCCCCccccCCCCCCEEEccCCcCccccchhhhcCCCCCeEEcccCcCCCCCCcccccccccceeec
Q 005045 258 THLRRLTMGENLMHGNIPVGIGNLVNLNLLGLEGNNLSGSVPEVIGRLNKLEGLGLNVNKFSGLIPSSLGNLTILTRLWM 337 (717)
Q Consensus 258 ~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L 337 (717)
.+|+.+.+..+ +..+...+|.++.+|+.+.+.++.++.+...+|.++.+|+.+.|..+ ++.+...+|.++.+|+.+.+
T Consensus 263 ~~l~~i~l~~~-i~~i~~~aF~~c~~L~~i~l~~~~i~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~C~~L~~i~i 340 (379)
T 4h09_A 263 TALKTLNFYAK-VKTVPYLLCSGCSNLTKVVMDNSAIETLEPRVFMDCVKLSSVTLPTA-LKTIQVYAFKNCKALSTISY 340 (379)
T ss_dssp TTCCEEEECCC-CSEECTTTTTTCTTCCEEEECCTTCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCCCCC
T ss_pred ehhcccccccc-ceeccccccccccccccccccccccceehhhhhcCCCCCCEEEcCcc-ccEEHHHHhhCCCCCCEEEE
Confidence 24444444332 22233334444445555555444444333444444444544444332 33344444444444444444
Q ss_pred c
Q 005045 338 E 338 (717)
Q Consensus 338 ~ 338 (717)
.
T Consensus 341 p 341 (379)
T 4h09_A 341 P 341 (379)
T ss_dssp C
T ss_pred C
Confidence 3
No 406
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=99.33 E-value=3.3e-12 Score=133.68 Aligned_cols=105 Identities=21% Similarity=0.162 Sum_probs=95.8
Q ss_pred cEEEcCCC-cCcCCCCcCCcCCCCCCEEECCC-CcccccCCcCCCCCCCCCEEEccCccccccCCccccCCCCCCEEecc
Q 005045 13 QDLNLTYN-YLSGKIPTNLSHCTELRSFEASV-NDFVGQIPNQLSSLTKLEIIGLGGSNLTGNVPAWIGNFSSLKALSLA 90 (717)
Q Consensus 13 ~~L~L~~n-~l~~~~~~~~~~l~~L~~L~L~~-n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~ 90 (717)
..++++++ +|+ .+|. |..+++|++|+|++ |.|++..+..|.++++|+.|+|++|+|++..|..|.+|++|+.|+|+
T Consensus 11 ~~v~~~~~n~l~-~ip~-l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~ 88 (347)
T 2ifg_A 11 SGLRCTRDGALD-SLHH-LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLS 88 (347)
T ss_dssp SCEECCSSCCCT-TTTT-SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECC
T ss_pred CEEEcCCCCCCC-ccCC-CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCC
Confidence 46799998 998 5788 99999999999996 99998888899999999999999999999889999999999999999
Q ss_pred CCcCcccCChhhhccCCCCeEeccCCCCCC
Q 005045 91 WNNLRGSIPNELGQLSGLGFFTLYGNFISG 120 (717)
Q Consensus 91 ~n~l~~~~~~~~~~l~~L~~L~L~~N~i~~ 120 (717)
+|+|++..+..|..++ |+.|+|++|.+..
T Consensus 89 ~N~l~~~~~~~~~~~~-L~~l~l~~N~~~c 117 (347)
T 2ifg_A 89 FNALESLSWKTVQGLS-LQELVLSGNPLHC 117 (347)
T ss_dssp SSCCSCCCSTTTCSCC-CCEEECCSSCCCC
T ss_pred CCccceeCHHHcccCC-ceEEEeeCCCccC
Confidence 9999977777777776 9999999999983
No 407
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=99.30 E-value=2.8e-10 Score=120.50 Aligned_cols=301 Identities=12% Similarity=0.068 Sum_probs=220.2
Q ss_pred eecEEEcCCCcCcCCCCcCCcCCCCCCEEECCCCcccccCCcCCCCCCCCCEEEccCccccccCCccccCCCCCCEEecc
Q 005045 11 MTQDLNLTYNYLSGKIPTNLSHCTELRSFEASVNDFVGQIPNQLSSLTKLEIIGLGGSNLTGNVPAWIGNFSSLKALSLA 90 (717)
Q Consensus 11 ~~~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~ 90 (717)
+++.+.+. ..++.+-..+|.+|.+|+.+.|..+ ++.+-..+|.+. +|+.+.+..+ ++.....+|.. .+|+.+++.
T Consensus 47 ~i~~v~ip-~~vt~Ig~~aF~~C~~L~~I~lp~~-v~~Ig~~aF~~c-~l~~i~~~~~-l~~I~~~aF~~-~~L~~i~lp 121 (379)
T 4h09_A 47 RISEVRVN-SGITSIGEANFNSCYNMTKVTVAST-VTSIGDGAFADT-KLQSYTGMER-VKKFGDYVFQG-TDLDDFEFP 121 (379)
T ss_dssp GCSEEEEC-TTEEEECTTTTTTCTTCCEEEECTT-CCEECTTTTTTC-CCCEEEECTT-CCEECTTTTTT-CCCSEEECC
T ss_pred CCEEEEeC-CCccChHHHHhhCCCCCCEEEeCCc-ceEechhhhcCC-CCceEECCce-eeEeccceecc-CCcccccCC
Confidence 56677775 3566677889999999999999765 675667778886 7888888654 66355556655 489999998
Q ss_pred CCcCcccCChhhhccCCCCeEeccCCCCCCCCCccccCCCCccEEEcccCcccccC-----------CcccccCCCCcce
Q 005045 91 WNNLRGSIPNELGQLSGLGFFTLYGNFISGIIPSSIYNISSIYYFSVTQNQLHGQL-----------PTDVGLTLPNLKI 159 (717)
Q Consensus 91 ~n~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~~l-----------~~~~~~~l~~L~~ 159 (717)
.+ ++.+...+|.+. +|+.+.+..+ ++.+....|.++.+++.+.+..+...... ....+.....+..
T Consensus 122 ~~-~~~i~~~~F~~~-~l~~~~~~~~-v~~i~~~~f~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 198 (379)
T 4h09_A 122 GA-TTEIGNYIFYNS-SVKRIVIPKS-VTTIKDGIGYKAENLEKIEVSSNNKNYVAENYVLYNKNKTILESYPAAKTGTE 198 (379)
T ss_dssp TT-CCEECTTTTTTC-CCCEEEECTT-CCEECSCTTTTCTTCCEEEECTTCSSEEEETTEEEETTSSEEEECCTTCCCSE
T ss_pred Cc-cccccccccccc-eeeeeeccce-eeccccchhcccccccccccccccceeecccceecccccceeccccccccccc
Confidence 76 443556666654 6887777654 55577888999999999988766543110 1112223444555
Q ss_pred eecccccccccCCccCCCCCCCCEEeccCccccccCCCCccCCCCCCeeeccccccCCcccCchhhhhhhccCCCCCEEE
Q 005045 160 FAGAVNYFTGSIPVSLSNASNLQVLDFAENGLTGTIPGNFGSLKDLVRLNFDQNELGSREIGDLNFLKFLANCTSLEVLG 239 (717)
Q Consensus 160 L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~l~~L~~L~ 239 (717)
+.+..+.. ......+....+|+.+.+..+ ++......|.++..|+.+.+..+ ++.++ ...|.++..|+.+.
T Consensus 199 ~~~~~~~~-~i~~~~f~~~~~l~~i~~~~~-~~~i~~~~f~~~~~L~~i~lp~~-v~~I~------~~aF~~~~~l~~i~ 269 (379)
T 4h09_A 199 FTIPSTVK-TVTAYGFSYGKNLKKITITSG-VTTLGDGAFYGMKALDEIAIPKN-VTSIG------SFLLQNCTALKTLN 269 (379)
T ss_dssp EECCTTCC-EECTTTTTTCSSCSEEECCTT-CCEECTTTTTTCSSCCEEEECTT-CCEEC------TTTTTTCTTCCEEE
T ss_pred ccccccee-EEeecccccccccceeeeccc-eeEEccccccCCccceEEEcCCC-ccEeC------ccccceeehhcccc
Confidence 55444332 245667888899999998766 44477788999999999999876 66666 56788999999999
Q ss_pred eecCcccCcCchhhhhccccccEEecCCCccCCCCCccccCCCCCCEEEccCCcCccccchhhhcCCCCCeEEcccCcCC
Q 005045 240 LARNSFGGEMPISIANLSTHLRRLTMGENLMHGNIPVGIGNLVNLNLLGLEGNNLSGSVPEVIGRLNKLEGLGLNVNKFS 319 (717)
Q Consensus 240 L~~N~l~~~~p~~~~~~~~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~ 319 (717)
+..+ ++......|... ++|+.+.+.++.++.+...+|.++.+|+.+.|..+ ++.+...+|.++.+|+.+.+..+ ++
T Consensus 270 l~~~-i~~i~~~aF~~c-~~L~~i~l~~~~i~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~C~~L~~i~ip~~-v~ 345 (379)
T 4h09_A 270 FYAK-VKTVPYLLCSGC-SNLTKVVMDNSAIETLEPRVFMDCVKLSSVTLPTA-LKTIQVYAFKNCKALSTISYPKS-IT 345 (379)
T ss_dssp ECCC-CSEECTTTTTTC-TTCCEEEECCTTCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCCCCCCTT-CC
T ss_pred cccc-ceeccccccccc-cccccccccccccceehhhhhcCCCCCCEEEcCcc-ccEEHHHHhhCCCCCCEEEECCc-cC
Confidence 9765 552334444454 69999999999998788889999999999999755 77677789999999999999765 67
Q ss_pred CCCCccccccccc
Q 005045 320 GLIPSSLGNLTIL 332 (717)
Q Consensus 320 ~~~~~~~~~l~~L 332 (717)
.+...+|.+...+
T Consensus 346 ~I~~~aF~~c~~~ 358 (379)
T 4h09_A 346 LIESGAFEGSSIT 358 (379)
T ss_dssp EECTTTTTTSSCC
T ss_pred EEchhHhhCCCCC
Confidence 6777788776433
No 408
>3tm0_A Aminoglycoside 3'-phosphotransferase; protein kinase, phosphorylation, transferase-antibiotic COMP; HET: ANP B31; 2.10A {Enterococcus faecalis} SCOP: d.144.1.6 PDB: 2b0q_A* 1l8t_A* 3q2j_A* 1j7i_A* 1j7u_A* 3h8p_A* 1j7l_A* 2bkk_A*
Probab=99.11 E-value=4.8e-11 Score=119.41 Aligned_cols=144 Identities=13% Similarity=0.067 Sum_probs=108.5
Q ss_pred ccccccccccCcccccceEEEEeCCCchhhhHHhHhhhhhHHHHHHHHHHHHhcCC-CCceeEEEEeeccccCCCCceEE
Q 005045 388 TDNFSKENLIGTGSFGSVYKGTLGDGTIVAIKVLKLQQQGALKSFIDECNALKSTR-HRNILRVITACSSVDLEGNDFKA 466 (717)
Q Consensus 388 ~~~y~~~~~ig~g~~g~v~~~~~~~~~~vavK~~~~~~~~~~~~~~~e~~~l~~l~-h~ni~~~~~~~~~~~~~~~~~~~ 466 (717)
...|++....+.|+.+.||++... ++.+++|+...........+.+|+++++.+. +..++++++++. ..+..|
T Consensus 13 l~~~~~~~~~~g~s~~~v~~~~~~-~~~~vlK~~~~~~~~~~~~~~~E~~~l~~l~~~~~vP~v~~~~~-----~~~~~~ 86 (263)
T 3tm0_A 13 IEKYRCVKDTEGMSPAKVYKLVGE-NENLYLKMTDSRYKGTTYDVEREKDMMLWLEGKLPVPKVLHFER-----HDGWSN 86 (263)
T ss_dssp HTTSEEEECCSCCSSSEEEEEECS-SCEEEEEEECGGGTTSTTCHHHHHHHHHHHTTTSCCCCEEEEEE-----ETTEEE
T ss_pred hccceeEeeccCCCCCeEEEEECC-CCcEEEEeCCcccCCCHHHHHHHHHHHHHHhcCCCCCeEEEEEe-----cCCceE
Confidence 456888888888888999999864 6789999886532222346788999998884 667778887753 345789
Q ss_pred EEEecCCCCChhhhccCCCCCcccccccCHHHHHHHHHHHHHHHHHHHhcC-----------------------------
Q 005045 467 LVFEFMSNGNLDQWLHPSPAEHYQFKKLSVIQRLNIAIDVASALDYLHHHC----------------------------- 517 (717)
Q Consensus 467 lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~i~~~i~~~l~~LH~~~----------------------------- 517 (717)
+||||++|.++.+..... .....++.+++++++.||+..
T Consensus 87 lv~e~i~G~~l~~~~~~~------------~~~~~~~~~l~~~l~~LH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 154 (263)
T 3tm0_A 87 LLMSEADGVLCSEEYEDE------------QSPEKIIELYAECIRLFHSIDISDCPYTNSLDSRLAELDYLLNNDLADVD 154 (263)
T ss_dssp EEEECCSSEEHHHHCCTT------------TCHHHHHHHHHHHHHHHHHSCCTTCSCBCCHHHHHHHHHHHHHTTCSCCS
T ss_pred EEEEecCCeehhhccCCc------------ccHHHHHHHHHHHHHHHhCCCcccCCCcchHHHHHHHHHHHHhccccccc
Confidence 999999999998764211 123467889999999999810
Q ss_pred ---------------------------CCCeeecCCCCCCEEeCCCCceEEeeeccchh
Q 005045 518 ---------------------------DTPIAHCDLKPSNVLLDKDMTAHVGDFGLAKF 549 (717)
Q Consensus 518 ---------------------------~~~ivH~dlkp~NIll~~~~~~kl~Dfg~~~~ 549 (717)
...++|||++|.||+++.++.+.|+||+.+..
T Consensus 155 ~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~l~HgDl~~~Nil~~~~~~~~lIDwe~a~~ 213 (263)
T 3tm0_A 155 CENWEEDTPFKDPRELYDFLKTEKPEEELVFSHGDLGDSNIFVKDGKVSGFIDLGRSGR 213 (263)
T ss_dssp GGGGSTTCSSSSHHHHHHHHHHCCCCCCEEEECSSCCTTSEEEETTEEEEECCCTTCEE
T ss_pred cccccccccCCCHHHHHHHHHhcCCCCCceEECCCCCcCcEEEECCcEEEEEEchhccc
Confidence 13599999999999998765667999987653
No 409
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=99.06 E-value=1.5e-10 Score=120.48 Aligned_cols=65 Identities=12% Similarity=0.195 Sum_probs=31.6
Q ss_pred cCCCCCEEEeecCcccCcCchhhhh--ccccccEEecCCCccCCCC----CccccCCCCCCEEEccCCcCc
Q 005045 231 NCTSLEVLGLARNSFGGEMPISIAN--LSTHLRRLTMGENLMHGNI----PVGIGNLVNLNLLGLEGNNLS 295 (717)
Q Consensus 231 ~l~~L~~L~L~~N~l~~~~p~~~~~--~~~~L~~L~l~~N~l~~~~----~~~~~~l~~L~~L~L~~N~l~ 295 (717)
.+++|+.|+|++|.+.+..+..+.. ..++|++|+|+.|.+.+.. +..+.++++|+.|+|++|.|+
T Consensus 250 ~~p~Lr~L~L~~~~i~~~~~~~la~a~~~~~L~~LdLs~n~L~d~G~~~L~~~L~~l~~L~~L~L~~n~i~ 320 (362)
T 2ra8_A 250 RFPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAGVLTDEGARLLLDHVDKIKHLKFINMKYNYLS 320 (362)
T ss_dssp TCTTCCEEEEESCTTHHHHHHHHHHCSSGGGCSEEECCSSCCBHHHHHHHHTTHHHHTTCSEEECCSBBCC
T ss_pred CCCCcCEEeCCCCCCchHHHHHHHhCccCCCCCEEECCCCCCChHHHHHHHhhcccCCcceEEECCCCcCC
Confidence 3567777777777776444444432 1134445555444444321 112233445555555555444
No 410
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=99.02 E-value=1.7e-10 Score=120.00 Aligned_cols=162 Identities=15% Similarity=0.176 Sum_probs=75.1
Q ss_pred hhhhccCCCCeEeccCCC-CCCCCCccccCCCCccEEEcccCcccccCCcccc-cCCCCcceeeccc--cccccc-----
Q 005045 100 NELGQLSGLGFFTLYGNF-ISGIIPSSIYNISSIYYFSVTQNQLHGQLPTDVG-LTLPNLKIFAGAV--NYFTGS----- 170 (717)
Q Consensus 100 ~~~~~l~~L~~L~L~~N~-i~~~~~~~~~~l~~L~~L~L~~N~l~~~l~~~~~-~~l~~L~~L~l~~--n~l~~~----- 170 (717)
..+..+++|+.|+|++|. +. .+. +. +++|++|+|..|.++......+. ..+|+|+.|+|+. |...+-
T Consensus 166 ~ll~~~P~L~~L~L~g~~~l~--l~~-~~-~~~L~~L~L~~~~l~~~~l~~l~~~~lp~L~~L~L~~~~~~~~~~~~~~~ 241 (362)
T 2ra8_A 166 PVLDAMPLLNNLKIKGTNNLS--IGK-KP-RPNLKSLEIISGGLPDSVVEDILGSDLPNLEKLVLYVGVEDYGFDGDMNV 241 (362)
T ss_dssp HHHHTCTTCCEEEEECCBTCB--CCS-CB-CTTCSEEEEECSBCCHHHHHHHHHSBCTTCCEEEEECBCGGGTCCSCGGG
T ss_pred HHHhcCCCCcEEEEeCCCCce--ecc-cc-CCCCcEEEEecCCCChHHHHHHHHccCCCCcEEEEeccccccccchhHHH
Confidence 344555666666666652 21 122 22 56666666666655422111111 1455666665532 111100
Q ss_pred CCccC--CCCCCCCEEeccCccccccCCCCc---cCCCCCCeeeccccccCCcccCchhhhhhhccCCCCCEEEeecCcc
Q 005045 171 IPVSL--SNASNLQVLDFAENGLTGTIPGNF---GSLKDLVRLNFDQNELGSREIGDLNFLKFLANCTSLEVLGLARNSF 245 (717)
Q Consensus 171 ~~~~~--~~l~~L~~L~l~~N~l~~~~~~~~---~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~l~~L~~L~L~~N~l 245 (717)
+...+ ..+++|++|+|++|.++...+..+ ..+++|++|+|+.|.|+..+...+ +..+.++++|+.|+|++|.|
T Consensus 242 l~~~l~~~~~p~Lr~L~L~~~~i~~~~~~~la~a~~~~~L~~LdLs~n~L~d~G~~~L--~~~L~~l~~L~~L~L~~n~i 319 (362)
T 2ra8_A 242 FRPLFSKDRFPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAGVLTDEGARLL--LDHVDKIKHLKFINMKYNYL 319 (362)
T ss_dssp TGGGSCTTTCTTCCEEEEESCTTHHHHHHHHHHCSSGGGCSEEECCSSCCBHHHHHHH--HTTHHHHTTCSEEECCSBBC
T ss_pred HHHHHhcCCCCCcCEEeCCCCCCchHHHHHHHhCccCCCCCEEECCCCCCChHHHHHH--HhhcccCCcceEEECCCCcC
Confidence 00111 235667777776666653222211 135666666666666655432111 22234456666666666666
Q ss_pred cCcCchhhhhccccccEEecCCCc
Q 005045 246 GGEMPISIANLSTHLRRLTMGENL 269 (717)
Q Consensus 246 ~~~~p~~~~~~~~~L~~L~l~~N~ 269 (717)
++..-..+... -...++++++.
T Consensus 320 ~d~~~~~l~~a--lg~~~~~~~~~ 341 (362)
T 2ra8_A 320 SDEMKKELQKS--LPMKIDVSDSQ 341 (362)
T ss_dssp CHHHHHHHHHH--CCSEEECCSBC
T ss_pred CHHHHHHHHHH--cCCEEEecCCc
Confidence 53333333321 12345555554
No 411
>1nd4_A Aminoglycoside 3'-phosphotransferase; protein kinase, ATPase, kanamycin; HET: KAN; 2.10A {Klebsiella pneumoniae} SCOP: d.144.1.6
Probab=98.96 E-value=4.7e-10 Score=112.02 Aligned_cols=140 Identities=16% Similarity=0.088 Sum_probs=97.0
Q ss_pred cccccccccccCcccccceEEEEeCCCchhhhHHhHhhhhhHHHHHHHHHHHHhcCCCCc--eeEEEEeeccccCCCCce
Q 005045 387 STDNFSKENLIGTGSFGSVYKGTLGDGTIVAIKVLKLQQQGALKSFIDECNALKSTRHRN--ILRVITACSSVDLEGNDF 464 (717)
Q Consensus 387 ~~~~y~~~~~ig~g~~g~v~~~~~~~~~~vavK~~~~~~~~~~~~~~~e~~~l~~l~h~n--i~~~~~~~~~~~~~~~~~ 464 (717)
...+|.+....+.|..+.||++...+|+.+++|+.... ....+..|+.+++.+.+.+ ++++++... .++.
T Consensus 18 ~~~~~~~~~~~~gg~~~~v~~~~~~~g~~~vlK~~~~~---~~~~~~~E~~~l~~l~~~~~~vP~~~~~~~-----~~~~ 89 (264)
T 1nd4_A 18 RLFGYDWAQQTIGCSDAAVFRLSAQGRPVLFVKTDLSG---ALNELQDEAARLSWLATTGVPCAAVLDVVT-----EAGR 89 (264)
T ss_dssp TTTTCEEEECSCTTSSCEEEEEECTTSCCEEEEEECSC---TTSCHHHHHHHHHHHHTTTCCBCCEEEEEE-----CSSC
T ss_pred hcCCCceEecccCCCCceEEEEecCCCCeEEEEeCCcc---cchhhhHHHHHHHHHHhCCCCCCeEEEecc-----CCCC
Confidence 34455554444455568999998777888999986543 2245678888888884433 455676642 3346
Q ss_pred EEEEEecCCCCChhhhccCCCCCcccccccCHHHHHHHHHHHHHHHHHHHhcC---------------------------
Q 005045 465 KALVFEFMSNGNLDQWLHPSPAEHYQFKKLSVIQRLNIAIDVASALDYLHHHC--------------------------- 517 (717)
Q Consensus 465 ~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~i~~~i~~~l~~LH~~~--------------------------- 517 (717)
.++||||++|.++. ... .. ...++.+++..++.+|+..
T Consensus 90 ~~~v~e~i~G~~l~--~~~----------~~---~~~~~~~l~~~l~~lh~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 154 (264)
T 1nd4_A 90 DWLLLGEVPGQDLL--SSH----------LA---PAEKVSIMADAMRRLHTLDPATCPFDHQAKHRIERARTRMEAGLVD 154 (264)
T ss_dssp EEEEEECCSSEETT--TSC----------CC---HHHHHHHHHHHHHHHTTSCGGGCCCBCCHHHHHHHHHHHHHTTCCC
T ss_pred CEEEEEecCCcccC--cCc----------CC---HhHHHHHHHHHHHHHhCCCCCCCCCchHHHHHHHHHHHHHhcCCcc
Confidence 89999999998884 211 11 1256777888888888741
Q ss_pred ----------------------------CCCeeecCCCCCCEEeCCCCceEEeeeccchh
Q 005045 518 ----------------------------DTPIAHCDLKPSNVLLDKDMTAHVGDFGLAKF 549 (717)
Q Consensus 518 ----------------------------~~~ivH~dlkp~NIll~~~~~~kl~Dfg~~~~ 549 (717)
..+++|||++|.||+++.++.+.|+|||.+..
T Consensus 155 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~HgDl~~~Nil~~~~~~~~liD~~~a~~ 214 (264)
T 1nd4_A 155 QDDLDEEHQGLAPAELFARLKARMPDGEDLVVTHGDACLPNIMVENGRFSGFIDCGRLGV 214 (264)
T ss_dssp TTSCCGGGTTCCHHHHHHHHHHTCCSSCCEEEECSSCCGGGEEEETTEEEEECCCTTCEE
T ss_pred chhhhhhccCccHHHHHHHHHHhcCCCCCeEEECCCCCCCcEEEECCcEEEEEcchhccc
Confidence 11399999999999998776677999998653
No 412
>3dxp_A Putative acyl-COA dehydrogenase; protein kinase-like fold, structural genomics, joint center structural genomics, JCSG; 2.32A {Ralstonia eutropha JMP134}
Probab=98.82 E-value=7.2e-09 Score=108.66 Aligned_cols=146 Identities=14% Similarity=0.133 Sum_probs=104.7
Q ss_pred ccccccCcccccceEEEEeCCCchhhhHHhH--hhh-hhHHHHHHHHHHHHhcCC--CCceeEEEEeeccccCCCCceEE
Q 005045 392 SKENLIGTGSFGSVYKGTLGDGTIVAIKVLK--LQQ-QGALKSFIDECNALKSTR--HRNILRVITACSSVDLEGNDFKA 466 (717)
Q Consensus 392 ~~~~~ig~g~~g~v~~~~~~~~~~vavK~~~--~~~-~~~~~~~~~e~~~l~~l~--h~ni~~~~~~~~~~~~~~~~~~~ 466 (717)
...+.++.|.++.||.+...+ ..+++|+.. ... ......+.+|+.+++.+. +..+++++..+.... ..+..+
T Consensus 41 ~~~~~l~~G~sn~~y~v~~~~-~~~vlr~~~~p~~~~~~~~~~~~~E~~~l~~L~~~~vpvP~~~~~~~~~~--~~g~~~ 117 (359)
T 3dxp_A 41 LSVEQFKGGQSNPTFKLVTPG-QTYVMRAKPGPKSKLLPSAHAIEREYRVMDALAGTDVPVAKMYALCEDES--VIGRAF 117 (359)
T ss_dssp CEEEECCC-CCSCEEEEECSS-CEEEEECCCC----------CHHHHHHHHHHHTTSSSCCCCEEEEECCTT--TTSSCE
T ss_pred ceEEEcCCcccceEEEEEECC-ceEEEEeCCCCCCCCCCcHHHHHHHHHHHHHhhcCCCCCCcEEEECCCCC--ccCCeE
Confidence 346778999999999998754 567778765 322 112346778999998886 455778887764421 124578
Q ss_pred EEEecCCCCChhhhccCCCCCcccccccCHHHHHHHHHHHHHHHHHHHhcC-----------------------------
Q 005045 467 LVFEFMSNGNLDQWLHPSPAEHYQFKKLSVIQRLNIAIDVASALDYLHHHC----------------------------- 517 (717)
Q Consensus 467 lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~i~~~i~~~l~~LH~~~----------------------------- 517 (717)
+||||++|.++.+... ..++......++.+++++|+.||+..
T Consensus 118 ~vme~v~G~~l~~~~~---------~~l~~~~~~~~~~~l~~~La~LH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 188 (359)
T 3dxp_A 118 YIMEFVSGRVLWDQSL---------PGMSPAERTAIYDEMNRVIAAMHTVDYQAIGLGDYGKPGNYFQRQIERWTKQYKL 188 (359)
T ss_dssp EEEECCCCBCCCCTTC---------TTCCHHHHHHHHHHHHHHHHHHHHSCTTTTTCTTSSCCSCHHHHHHHHHHHHHHH
T ss_pred EEEEecCCeecCCCcc---------ccCCHHHHHHHHHHHHHHHHHHhCCCchhccccccCCCCCchHHHHHHHHHHHHh
Confidence 9999999877754221 34678888899999999999999731
Q ss_pred --------------------------CCCeeecCCCCCCEEeCCCCc--eEEeeeccchh
Q 005045 518 --------------------------DTPIAHCDLKPSNVLLDKDMT--AHVGDFGLAKF 549 (717)
Q Consensus 518 --------------------------~~~ivH~dlkp~NIll~~~~~--~kl~Dfg~~~~ 549 (717)
...++|||+++.||+++.++. +.|+||+.+..
T Consensus 189 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~lvHgD~~~~Nil~~~~~~~v~~viDwe~a~~ 248 (359)
T 3dxp_A 189 SETESIPAMDSLMDWLPQHIPQEDADLTSIVHGDYRLDNLMFHPTEPRVLAVLDWELSTL 248 (359)
T ss_dssp HCCSCCHHHHHHHHHGGGCCCSTTSSCCEEECSSCSGGGEEECSSSSCEEEECCCTTCEE
T ss_pred cCCcCChHHHHHHHHHHhcCCCccCCCceEEeCCCCCCcEEEeCCCCcEEEEECcccccc
Confidence 147999999999999997753 68999998764
No 413
>3sg8_A APH(2'')-ID; antibiotic resistance enzyme, transferase, aminoglycoside, phosphorylation, transferase-antibiotic complex; HET: TOY; 1.80A {Enterococcus casseliflavus} PDB: 3sg9_A* 3n4v_A 3n4t_A 3n4u_A 3r81_A* 3r80_A* 3r7z_A* 3r82_A* 3vcq_A* 4dbx_A 4de4_A* 4dfb_A* 4dfu_A* 4dt9_A* 4dt8_A* 4dtb_A* 3sgc_A 4dta_A* 3lzh_A
Probab=98.69 E-value=1.1e-09 Score=111.87 Aligned_cols=195 Identities=17% Similarity=0.136 Sum_probs=118.9
Q ss_pred ccccCcccccceEEEEeCCCchhhhHHhHhhhhhHHHHHHHHHHHHhcC-CCCc--eeEEEEeeccccCCCCceEEEEEe
Q 005045 394 ENLIGTGSFGSVYKGTLGDGTIVAIKVLKLQQQGALKSFIDECNALKST-RHRN--ILRVITACSSVDLEGNDFKALVFE 470 (717)
Q Consensus 394 ~~~ig~g~~g~v~~~~~~~~~~vavK~~~~~~~~~~~~~~~e~~~l~~l-~h~n--i~~~~~~~~~~~~~~~~~~~lv~e 470 (717)
.+.++.|.+..||.+. +.+++|+.... .....+.+|+++++.+ .+.. +++++..+... ..-...|+||+
T Consensus 25 i~~~~~G~~n~v~~v~----~~~vlR~~~~~--~~~~~~~~E~~~l~~l~~~~~v~vP~~~~~~~~~--~~~~~~~~vm~ 96 (304)
T 3sg8_A 25 IEISGEGNDCIAYEIN----RDFIFKFPKHS--RGSTNLFNEVNILKRIHNKLPLPIPEVVFTGMPS--ETYQMSFAGFT 96 (304)
T ss_dssp CCEEEECSSEEEEEST----TSEEEEEESSH--HHHHHHHHHHHHHHHHTTSSSSCCCCEEEECCCC--SSCSCSCEEEE
T ss_pred eEecCCCCcceEEEEC----CEEEEEecCCc--chHHHHHHHHHHHHHHHhcCCCCCCceEeecCCC--CCCCcceEEEc
Confidence 3457888888888753 45778875432 3346788899998877 3322 44444443211 11123589999
Q ss_pred cCCCCChhhhccCCCCCcccccccCHHHHHHHHHHHHHHHHHHHhcC---------------------------------
Q 005045 471 FMSNGNLDQWLHPSPAEHYQFKKLSVIQRLNIAIDVASALDYLHHHC--------------------------------- 517 (717)
Q Consensus 471 ~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~i~~~i~~~l~~LH~~~--------------------------------- 517 (717)
+++|.++.+... ..++..++..++.+++..++.||+..
T Consensus 97 ~i~G~~l~~~~~---------~~l~~~~~~~~~~~l~~~la~LH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 167 (304)
T 3sg8_A 97 KIKGVPLTPLLL---------NNLPKQSQNQAAKDLARFLSELHSINISGFKSNLVLDFREKINEDNKKIKKLLSRELKG 167 (304)
T ss_dssp CCCCEECCHHHH---------HTSCHHHHHHHHHHHHHHHHHHHHSCCTTSCGGGBCCHHHHHHHHHHHHHHHHTTTSCH
T ss_pred ccCCeECCcccc---------ccCCHHHHHHHHHHHHHHHHHHHcCCCCCCCccchhhHHHHHHHHHHHHHHHhcccCCc
Confidence 999988865322 34677778888899999998888610
Q ss_pred ----------------------CCCeeecCCCCCCEEeCC--CCceEEeeeccchhcccccCC---CCC----Ccceeec
Q 005045 518 ----------------------DTPIAHCDLKPSNVLLDK--DMTAHVGDFGLAKFLFEISDN---PSK----NQTVSIG 566 (717)
Q Consensus 518 ----------------------~~~ivH~dlkp~NIll~~--~~~~kl~Dfg~~~~~~~~~~~---~~~----~~~~~~~ 566 (717)
...++|+|++|.||+++. .+.+.|+||+.+.......+- ... .......
T Consensus 168 ~~~~~l~~~~~~~l~~~~~~~~~~~~~HgD~~~~N~l~~~~~~~~~~~iD~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~ 247 (304)
T 3sg8_A 168 PQMKKVDDFYRDILENEIYFKYYPCLIHNDFSSDHILFDTEKNTICGIIDFGDAAISDPDNDFISLMEDDEEYGMEFVSK 247 (304)
T ss_dssp HHHHHHHHHHHHHHTCGGGTCCCCEEECSCCCGGGEEEETTTTEEEEECCCTTCEEECTTHHHHTTCCTTTSCCHHHHHH
T ss_pred ccHHHHHHHHHHHHhccccccCCceeEeCCCCcccEEEeCCCCCEEEEEeCCCCccCChHHHHHHHHhhccccCHHHHHH
Confidence 135899999999999997 456889999987653110000 000 0000000
Q ss_pred ccccccccC-CCccCCCCCcccchhhHHHHHHHHHhCCCCC
Q 005045 567 LKGSIGYIP-PEHMNGQVSILGDIYSYGILLLEMFTGKRPT 606 (717)
Q Consensus 567 ~~~~~~y~a-PE~~~~~~~~~sDvwslG~vl~elltg~~p~ 606 (717)
.....++.. |+... +.....+.|++|.++|.+.+|..+|
T Consensus 248 ~l~~Y~~~~~~~~~~-r~~~~~~~~~l~~~~~~~~~g~~~~ 287 (304)
T 3sg8_A 248 ILNHYKHKDIPTVLE-KYRMKEKYWSFEKIIYGKEYGYMDW 287 (304)
T ss_dssp HHHHHTCSCHHHHHH-HHHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHcCCCCcHHHHH-HHHHHHHHHHHHHHHHHHHcCCHHH
Confidence 001111111 11110 0122358999999999999998876
No 414
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=98.62 E-value=3.9e-09 Score=99.02 Aligned_cols=113 Identities=13% Similarity=0.132 Sum_probs=49.1
Q ss_pred CcCCCCCCEEECCCC-cccc----cCCcCCCCCCCCCEEEccCcccccc----CCccccCCCCCCEEeccCCcCccc---
Q 005045 30 LSHCTELRSFEASVN-DFVG----QIPNQLSSLTKLEIIGLGGSNLTGN----VPAWIGNFSSLKALSLAWNNLRGS--- 97 (717)
Q Consensus 30 ~~~l~~L~~L~L~~n-~l~~----~~p~~~~~l~~L~~L~L~~n~l~~~----~p~~~~~l~~L~~L~L~~n~l~~~--- 97 (717)
+...++|++|+|++| .+.. .+...+...++|++|+|++|.|.+. +...+...++|++|+|++|.|+..
T Consensus 32 l~~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~~~g~~ 111 (185)
T 1io0_A 32 QNNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGIL 111 (185)
T ss_dssp HTTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHHHH
T ss_pred HhcCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCCHHHHH
Confidence 344455555555555 4432 1222234444555555555555421 122233334455555555555422
Q ss_pred -CChhhhccCCCCeEec--cCCCCCCC----CCccccCCCCccEEEcccCcc
Q 005045 98 -IPNELGQLSGLGFFTL--YGNFISGI----IPSSIYNISSIYYFSVTQNQL 142 (717)
Q Consensus 98 -~~~~~~~l~~L~~L~L--~~N~i~~~----~~~~~~~l~~L~~L~L~~N~l 142 (717)
+..++...++|++|+| ++|.|+.. +...+...++|++|+|++|.+
T Consensus 112 ~l~~~L~~n~~L~~L~L~~~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~n~i 163 (185)
T 1io0_A 112 ALVEALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFTQQ 163 (185)
T ss_dssp HHHHGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCSSH
T ss_pred HHHHHHHhCCCceEEEecCCCCCCCHHHHHHHHHHHHhCCCcCEEeccCCCC
Confidence 2233344444555555 44554421 112233334444555544444
No 415
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=98.60 E-value=1.8e-08 Score=94.38 Aligned_cols=42 Identities=14% Similarity=0.245 Sum_probs=20.3
Q ss_pred ccCCCCCCEEEc--cCCcCcccc----chhhhcCCCCCeEEcccCcCC
Q 005045 278 IGNLVNLNLLGL--EGNNLSGSV----PEVIGRLNKLEGLGLNVNKFS 319 (717)
Q Consensus 278 ~~~l~~L~~L~L--~~N~l~~~~----~~~~~~l~~L~~L~Ls~N~l~ 319 (717)
+...++|++|+| ++|.|.... ...+...+.|++|+|++|.+.
T Consensus 117 L~~n~~L~~L~L~~~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~n~i~ 164 (185)
T 1io0_A 117 LQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFTQQG 164 (185)
T ss_dssp GGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCSSHH
T ss_pred HHhCCCceEEEecCCCCCCCHHHHHHHHHHHHhCCCcCEEeccCCCCC
Confidence 344445556666 555555322 223333455555555555543
No 416
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=98.58 E-value=8.1e-09 Score=101.66 Aligned_cols=67 Identities=19% Similarity=0.241 Sum_probs=40.8
Q ss_pred cCCCCCCEEeccCCcCcc--cCChhhhccCCCCeEeccCCCCCCCCCccccCCC--CccEEEcccCcccccCC
Q 005045 79 GNFSSLKALSLAWNNLRG--SIPNELGQLSGLGFFTLYGNFISGIIPSSIYNIS--SIYYFSVTQNQLHGQLP 147 (717)
Q Consensus 79 ~~l~~L~~L~L~~n~l~~--~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~--~L~~L~L~~N~l~~~l~ 147 (717)
.++++|+.|+|++|+|++ .+|..+..+++|+.|+|++|+|++. ..+..+. +|++|+|++|.+.+.+|
T Consensus 167 ~~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~--~~l~~l~~l~L~~L~L~~Npl~~~~~ 237 (267)
T 3rw6_A 167 ENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSE--RELDKIKGLKLEELWLDGNSLCDTFR 237 (267)
T ss_dssp HHCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSG--GGGGGGTTSCCSEEECTTSTTGGGCS
T ss_pred hhCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCc--hhhhhcccCCcceEEccCCcCccccC
Confidence 346667777777777765 3345566677777777777777644 2233333 66677777776665444
No 417
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=98.51 E-value=7.5e-09 Score=101.92 Aligned_cols=105 Identities=17% Similarity=0.223 Sum_probs=70.4
Q ss_pred CcCCCCCCE--EECCCCccc---ccCCcCCCCCCCCCEEEccCccccc--cCCccccCCCCCCEEeccCCcCcccCChhh
Q 005045 30 LSHCTELRS--FEASVNDFV---GQIPNQLSSLTKLEIIGLGGSNLTG--NVPAWIGNFSSLKALSLAWNNLRGSIPNEL 102 (717)
Q Consensus 30 ~~~l~~L~~--L~L~~n~l~---~~~p~~~~~l~~L~~L~L~~n~l~~--~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~ 102 (717)
|...+.|.. ++++.|... +.++....++++|+.|+|++|+|++ .+|..+..+++|+.|+|++|+|++. ..+
T Consensus 137 l~~dp~L~~~~l~l~~N~~~~~~~~l~i~~~~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~--~~l 214 (267)
T 3rw6_A 137 LRSDPDLVAQNIDVVLNRRSCMAATLRIIEENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSE--REL 214 (267)
T ss_dssp GGGCHHHHHTTCCCCTTSHHHHHHHHHHHHHHCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSG--GGG
T ss_pred cCCCcchhhcCccccCCHHHHHHHHHHHHHhhCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCc--hhh
Confidence 444455655 667777433 2222222557788888888888885 3446667888888888888888854 334
Q ss_pred hccC--CCCeEeccCCCCCCCCC-------ccccCCCCccEEE
Q 005045 103 GQLS--GLGFFTLYGNFISGIIP-------SSIYNISSIYYFS 136 (717)
Q Consensus 103 ~~l~--~L~~L~L~~N~i~~~~~-------~~~~~l~~L~~L~ 136 (717)
..+. +|++|+|++|.+.+..| ..+..+++|+.||
T Consensus 215 ~~l~~l~L~~L~L~~Npl~~~~~~~~~y~~~il~~~P~L~~LD 257 (267)
T 3rw6_A 215 DKIKGLKLEELWLDGNSLCDTFRDQSTYISAIRERFPKLLRLD 257 (267)
T ss_dssp GGGTTSCCSEEECTTSTTGGGCSSHHHHHHHHHHHCTTCCEES
T ss_pred hhcccCCcceEEccCCcCccccCcchhHHHHHHHHCcccCeEC
Confidence 4454 88888888888875544 2366778888765
No 418
>3r70_A Aminoglycoside phosphotransferase; structural genomics, center for structural genomics of infec diseases, csgid; HET: MSE ADP PE3; 1.80A {Escherichia coli} PDB: 3r6z_A* 3uzr_A* 4dca_A* 3hav_A* 3ham_A*
Probab=98.37 E-value=4e-07 Score=93.52 Aligned_cols=136 Identities=18% Similarity=0.160 Sum_probs=98.1
Q ss_pred ccccccccCcccccceEEEEeCCCchhhhHHhHhhhhhHHHHHHHHHHHHhcCCC----CceeEEEEeeccccCCCCceE
Q 005045 390 NFSKENLIGTGSFGSVYKGTLGDGTIVAIKVLKLQQQGALKSFIDECNALKSTRH----RNILRVITACSSVDLEGNDFK 465 (717)
Q Consensus 390 ~y~~~~~ig~g~~g~v~~~~~~~~~~vavK~~~~~~~~~~~~~~~e~~~l~~l~h----~ni~~~~~~~~~~~~~~~~~~ 465 (717)
.+...+.++.|....||.+ |+.+++|+..... ....+..|.++++.+.+ ..++++++. +..
T Consensus 38 ~i~~v~~l~~G~~n~vy~v----g~~~vlR~~~~~~--~~~~~~~E~~~L~~L~~~~~~~~vP~v~~~---------~~~ 102 (320)
T 3r70_A 38 KINELRYLSSGDDSDTFLC----NEQYVVKVPKRDS--VRISQKRELELYRFLENCKLSYQIPAVVYQ---------SDR 102 (320)
T ss_dssp CCSCEEEEEECSSEEEEEE----TTTEEEEEESSHH--HHHHHHHHHHHHHHHTTSCCSSBCCCEEEE---------CSS
T ss_pred ceEEEEeCCCCCCceEEEE----CCEEEEEeCCcHH--HHHHHHHHHHHHHHHHhcCCCCCcceEEec---------CCc
Confidence 4455677889999999988 6678888754322 23557889988888755 223444443 245
Q ss_pred EEEEecCCCCChhhhccCCCCCcccccccCHHHHHHHHHHHHHHHHHHHhcCC---------------------------
Q 005045 466 ALVFEFMSNGNLDQWLHPSPAEHYQFKKLSVIQRLNIAIDVASALDYLHHHCD--------------------------- 518 (717)
Q Consensus 466 ~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~i~~~i~~~l~~LH~~~~--------------------------- 518 (717)
++||||++|.++.+... ..++..+...++.+++..++.||+...
T Consensus 103 ~lvme~i~G~~l~~~~~---------~~l~~~~~~~~~~~l~~~La~LH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 173 (320)
T 3r70_A 103 FNIMKYIKGERITYEQY---------HKLSEKEKDALAYDEATFLKELHSIEIDCSVSLFSDALVNKKDKFLQDKKLLIS 173 (320)
T ss_dssp CEEEECCCCBCCCHHHH---------TTSCHHHHHHHHHHHHHHHHHHHHSCCCTTSHHHHTTBCCHHHHHHHHHHHHHH
T ss_pred EEEEeecCCcccccccc---------ccCCHHHHHHHHHHHHHHHHHHhCCCcccCCCccccccccchHHHHHHHHHHHH
Confidence 89999999988864322 345666777888888888888885321
Q ss_pred ---------------------------------CCeeecCCCCCCEEeCCCCceEEeeeccchh
Q 005045 519 ---------------------------------TPIAHCDLKPSNVLLDKDMTAHVGDFGLAKF 549 (717)
Q Consensus 519 ---------------------------------~~ivH~dlkp~NIll~~~~~~kl~Dfg~~~~ 549 (717)
..++|+|++|.||+++.++.+.|+||+.+..
T Consensus 174 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~H~D~~~~N~l~~~~~~~~~iD~~~~~~ 237 (320)
T 3r70_A 174 ILEKEQLLTDEMLEHIETIYENILSNAVLFKYTPCLVHNDFSANNMIFRNNRLFGVIDFGDFNV 237 (320)
T ss_dssp HHHHTTCCCHHHHHHHHHHHHHHHTCGGGTCCCCEEECSCCSGGGEEEETTEEEEECCCTTCEE
T ss_pred HHhhcccccccchHHHHHHHHHHHhccccccCCceeeECCCCCCcEEEECCceEEEECCccccc
Confidence 2359999999999999866679999998764
No 419
>3tdw_A Gentamicin resistance protein; kinase, phosphoryl transfer, antibiotic resistance, transfer; HET: GDP; 1.70A {Enterococcus gallinarum} PDB: 3tdv_A*
Probab=98.21 E-value=2.6e-06 Score=86.70 Aligned_cols=137 Identities=16% Similarity=0.099 Sum_probs=91.8
Q ss_pred ccccCcccccceEEEEeCCCchhhhHHhHhhhhhHHHHHHHHHHHHhcCCCC---ceeEEEEeeccccCCCCceEEEEEe
Q 005045 394 ENLIGTGSFGSVYKGTLGDGTIVAIKVLKLQQQGALKSFIDECNALKSTRHR---NILRVITACSSVDLEGNDFKALVFE 470 (717)
Q Consensus 394 ~~~ig~g~~g~v~~~~~~~~~~vavK~~~~~~~~~~~~~~~e~~~l~~l~h~---ni~~~~~~~~~~~~~~~~~~~lv~e 470 (717)
.+.++.|....||.. |+.+++|+.. .......+..|+++++.+.+. .+.+++.++. ...+..++|||
T Consensus 24 v~~l~~G~~n~v~~v----g~~~VlR~~~--~~~~~~~~~~E~~~L~~L~~~~~v~VP~~~~~~~----~~~g~~~~v~e 93 (306)
T 3tdw_A 24 VESLGEGFRNYAILV----NGDWVFRFPK--SQQGADELNKEIQLLPLLVGCVKVNIPQYVYIGK----RSDGNPFVGYR 93 (306)
T ss_dssp EEEEEECSSEEEEEE----TTTEEEEEES--SHHHHHHHHHHHHHHHHHTTTCSSBCCCEEEEEE----CTTSCEEEEEE
T ss_pred eeecCCCcceeEEEE----CCEEEEEecC--CchHHHHHHHHHHHHHHHHhcCCCCCCCeEeecc----cCCCceEEEEe
Confidence 345677777888887 5678888742 223456788999999998542 3556565543 12346789999
Q ss_pred cCCCCChhhhccCCCCCcccccccCHHHHHHHHHHHHHHHHHHHhcC---------------------------------
Q 005045 471 FMSNGNLDQWLHPSPAEHYQFKKLSVIQRLNIAIDVASALDYLHHHC--------------------------------- 517 (717)
Q Consensus 471 ~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~i~~~i~~~l~~LH~~~--------------------------------- 517 (717)
+++|.++.+..- ..++......++.++++.++.||+..
T Consensus 94 ~i~G~~l~~~~~---------~~l~~~~~~~~~~~lg~~La~LH~~~~~~~~~~g~p~~~w~~~~~~~~~~~~~~~~~~l 164 (306)
T 3tdw_A 94 KVQGQILGEDGM---------AVLPDDAKDRLALQLAEFMNELSAFPVETAISAGVPVTNLKNKILLLSEAVEDQVFPLL 164 (306)
T ss_dssp CCCSEECHHHHH---------TTSCHHHHHHHHHHHHHHHHHHHHSCHHHHHHTTCCBCCHHHHHHHHHHHHHHHTGGGS
T ss_pred ccCCeECchhhh---------hhCCHHHHHHHHHHHHHHHHHHhcCCcccccccCCChHHHHHHHHHHHHHHHHhccccc
Confidence 999988866321 22344455555566666665555421
Q ss_pred ------------------------CCCeeecCCCCCCEEeCC---CCc-eEEeeeccchh
Q 005045 518 ------------------------DTPIAHCDLKPSNVLLDK---DMT-AHVGDFGLAKF 549 (717)
Q Consensus 518 ------------------------~~~ivH~dlkp~NIll~~---~~~-~kl~Dfg~~~~ 549 (717)
...++|+|++|.||+++. ++. +.|+||+.+..
T Consensus 165 ~~~~~~~l~~~~~~~l~~~~~~~~~~~~~HgD~~~~N~l~~~~~~~~~~~~~iD~~~a~~ 224 (306)
T 3tdw_A 165 DESLRDYLTLRFQSYMTHPVYTRYTPRLIHGDLSPDHFLTNLNSRQTPLTGIIDFGDAAI 224 (306)
T ss_dssp CHHHHHHHHHHHHHHHHCHHHHCCCCEEECSCCSGGGEEECTTCSSCCEEEECCCTTCEE
T ss_pred chhhHHHHHHHHHHHHhCcccccCCCeeEeCCCCcccEEEecCCCCCceEEEEehhhcCC
Confidence 235799999999999987 455 58999997653
No 420
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=98.16 E-value=5.3e-07 Score=82.10 Aligned_cols=92 Identities=10% Similarity=0.084 Sum_probs=61.4
Q ss_pred CCcCCCCCCCCCEEEccCccccccCCccccCCCCCCEEeccCCc-CcccCChhhhcc----CCCCeEeccCCC-CCCCCC
Q 005045 50 IPNQLSSLTKLEIIGLGGSNLTGNVPAWIGNFSSLKALSLAWNN-LRGSIPNELGQL----SGLGFFTLYGNF-ISGIIP 123 (717)
Q Consensus 50 ~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~l----~~L~~L~L~~N~-i~~~~~ 123 (717)
+|.....-.+|+.|||++|.|++.--..+..+++|++|+|++|. |+..--..+..+ ++|++|+|++|. |+...-
T Consensus 53 LP~~~~~~~~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl 132 (176)
T 3e4g_A 53 LPTGPLDKYKIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGI 132 (176)
T ss_dssp SCCCSTTCCCEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHH
T ss_pred CCcccCCCceEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHH
Confidence 34433333467888888888776655667778888888888874 664433445543 358888888874 775445
Q ss_pred ccccCCCCccEEEcccCc
Q 005045 124 SSIYNISSIYYFSVTQNQ 141 (717)
Q Consensus 124 ~~~~~l~~L~~L~L~~N~ 141 (717)
..+..+++|++|+|+++.
T Consensus 133 ~~L~~~~~L~~L~L~~c~ 150 (176)
T 3e4g_A 133 IALHHFRNLKYLFLSDLP 150 (176)
T ss_dssp HHGGGCTTCCEEEEESCT
T ss_pred HHHhcCCCCCEEECCCCC
Confidence 566777888888888775
No 421
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=98.11 E-value=7e-07 Score=81.32 Aligned_cols=94 Identities=12% Similarity=0.131 Sum_probs=71.4
Q ss_pred CCcCCcCCCCCCEEECCCCcccccCCcCCCCCCCCCEEEccCcc-ccccCCccccCC----CCCCEEeccCCc-CcccCC
Q 005045 26 IPTNLSHCTELRSFEASVNDFVGQIPNQLSSLTKLEIIGLGGSN-LTGNVPAWIGNF----SSLKALSLAWNN-LRGSIP 99 (717)
Q Consensus 26 ~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~-l~~~~p~~~~~l----~~L~~L~L~~n~-l~~~~~ 99 (717)
+|.....--.|+.|||++|.++..--..+.++++|+.|+|++|. |++.--..++.+ ++|++|+|++|. |+..--
T Consensus 53 LP~~~~~~~~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl 132 (176)
T 3e4g_A 53 LPTGPLDKYKIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGI 132 (176)
T ss_dssp SCCCSTTCCCEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHH
T ss_pred CCcccCCCceEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHH
Confidence 45443334579999999999886555567889999999999985 776555556654 379999999985 876555
Q ss_pred hhhhccCCCCeEeccCCC-CC
Q 005045 100 NELGQLSGLGFFTLYGNF-IS 119 (717)
Q Consensus 100 ~~~~~l~~L~~L~L~~N~-i~ 119 (717)
..+..+++|++|+|+++. ++
T Consensus 133 ~~L~~~~~L~~L~L~~c~~It 153 (176)
T 3e4g_A 133 IALHHFRNLKYLFLSDLPGVK 153 (176)
T ss_dssp HHGGGCTTCCEEEEESCTTCC
T ss_pred HHHhcCCCCCEEECCCCCCCC
Confidence 667889999999999986 44
No 422
>4gkh_A Aminoglycoside 3'-phosphotransferase APHA1-IAB; pyrazolopyrimidine, 1-Na-PP1, bumped kinase inhibitor, BKI, kinase inhibitor; HET: KAN 0J9; 1.86A {Acinetobacter baumannii} PDB: 4feu_A* 4few_A* 4fex_A* 4fev_A* 4gki_A* 4ej7_A* 3r78_A*
Probab=98.06 E-value=5e-06 Score=83.04 Aligned_cols=134 Identities=19% Similarity=0.095 Sum_probs=90.9
Q ss_pred cCccccc-ceEEEEeC-CCchhhhHHhHhhhhhHHHHHHHHHHHHhcCC-CCceeEEEEeeccccCCCCceEEEEEecCC
Q 005045 397 IGTGSFG-SVYKGTLG-DGTIVAIKVLKLQQQGALKSFIDECNALKSTR-HRNILRVITACSSVDLEGNDFKALVFEFMS 473 (717)
Q Consensus 397 ig~g~~g-~v~~~~~~-~~~~vavK~~~~~~~~~~~~~~~e~~~l~~l~-h~ni~~~~~~~~~~~~~~~~~~~lv~e~~~ 473 (717)
+..|.++ .||+...+ .++.+++|+-... ....+.+|...++.+. +--+.+++.++. +.+..++|||+++
T Consensus 32 ~~~G~S~~~v~rl~~~~~~~~~~lk~~~~~---~~~~~~~E~~~l~~l~~~vPVP~v~~~~~-----~~~~~~lvme~l~ 103 (272)
T 4gkh_A 32 DNVGQSGATIYRLYGKPNAPELFLKHGKGS---VANDVTDEMVRLNWLTAFMPLPTIKHFIR-----TPDDAWLLTTAIP 103 (272)
T ss_dssp EECSSSSCEEEEEECCTTCCCEEEEEEETH---HHHHHHHHHHHHHHHTTTSCCCCEEEEEE-----ETTEEEEEEECCC
T ss_pred ccCCCcCCeEEEEEecCCCeEEEEEECCCC---CHhHHHHHHHHHHHhccCCCcCeEEEEEE-----ECCeEEEEEEeeC
Confidence 3445554 58888755 5667888875533 3355677888888773 333666677643 3357899999999
Q ss_pred CCChhhhccCCCCCcccccccCHHHHHHHHHHHHHHHHHHHhcC------------------------------------
Q 005045 474 NGNLDQWLHPSPAEHYQFKKLSVIQRLNIAIDVASALDYLHHHC------------------------------------ 517 (717)
Q Consensus 474 ~~~L~~~l~~~~~~~~~~~~~~~~~~~~i~~~i~~~l~~LH~~~------------------------------------ 517 (717)
|.++.+..... ......++.+++..++.||...
T Consensus 104 G~~~~~~~~~~-----------~~~~~~~~~~l~~~L~~Lh~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 172 (272)
T 4gkh_A 104 GKTAFQVLEEY-----------PDSGENIVDALAVFLRRLHSIPVCNCPFNSDRVFRLAQAQSRMNNGLVDASDFDDERN 172 (272)
T ss_dssp SEEHHHHHHHC-----------GGGHHHHHHHHHHHHHHHHTSCGGGCCBBCCHHHHHHHHHHHHHTTCCCGGGCCGGGT
T ss_pred CccccccccCC-----------HHHHHHHHHHHHHHHHHhcCCCcccCCcCcccccchhhHHHHHHHhhhhhhhcccccc
Confidence 98887654321 1123456667777777777531
Q ss_pred -------------------CCCeeecCCCCCCEEeCCCCceEEeeeccchh
Q 005045 518 -------------------DTPIAHCDLKPSNVLLDKDMTAHVGDFGLAKF 549 (717)
Q Consensus 518 -------------------~~~ivH~dlkp~NIll~~~~~~kl~Dfg~~~~ 549 (717)
...++|||+++.||+++.++.+-|+||+.+..
T Consensus 173 ~~~~~~~~~~l~~~~~~~~~~~l~HGDl~~~Nil~~~~~~~~viDwe~a~~ 223 (272)
T 4gkh_A 173 GWPVEQVWKEMHKLLPFSPDSVVTHGDFSLDNLIFDEGKLIGCIDVGRVGI 223 (272)
T ss_dssp TCCHHHHHHHHHTTCCCCCCEEEECSCCCTTSEEEETTEEEEECCCTTCEE
T ss_pred chHHHHHHHHHHhcccccCCcEEEcCCCCCCeEEEECCeEEEEEECccccc
Confidence 01289999999999999877777999987753
No 423
>3d1u_A Putative fructosamine-3-kinase; YP_290396.1, structural genomics, joint center for structural genomics, JCSG, protein structure initiative; 1.85A {Thermobifida fusca} PDB: 3f7w_A
Probab=97.98 E-value=4.9e-06 Score=83.61 Aligned_cols=76 Identities=18% Similarity=0.114 Sum_probs=59.3
Q ss_pred cccccCcccccceEEEEeCCCchhhhHHhHhhhhhHHHHHHHHHHHHhcCCCC---ceeEEEEeeccccCCCCceEEEEE
Q 005045 393 KENLIGTGSFGSVYKGTLGDGTIVAIKVLKLQQQGALKSFIDECNALKSTRHR---NILRVITACSSVDLEGNDFKALVF 469 (717)
Q Consensus 393 ~~~~ig~g~~g~v~~~~~~~~~~vavK~~~~~~~~~~~~~~~e~~~l~~l~h~---ni~~~~~~~~~~~~~~~~~~~lv~ 469 (717)
..+.++.|.++.||++...+|+.+++|+...........+..|++.++.+.+. .++++++.. ..++||
T Consensus 19 ~~~~l~gG~~n~vy~v~~~dG~~~vvK~~~~~~~~~~~~~~~E~~~L~~L~~~~~v~vP~v~~~~---------~~~lvm 89 (288)
T 3d1u_A 19 AVAERGHSHRWHLYRVELADGTPLFVKALPDDAPALDGLFRAEALGLDWLGRSFGSPVPQVAGWD---------DRTLAM 89 (288)
T ss_dssp EEEEEEEETTEEEEEEEETTSCEEEEEECCTTCCCCTTHHHHHHHHHHHHTCSTTCCSCCEEEEE---------TTEEEE
T ss_pred ceeeeCCcchhheEEEEeCCCCeEEEEecCCCCcchhHHHHHHHHHHHHHHhcCCCCcCeEEEec---------CcEEEE
Confidence 45678999999999999888999999986543333346788999999999764 577777663 258999
Q ss_pred ecCCCCCh
Q 005045 470 EFMSNGNL 477 (717)
Q Consensus 470 e~~~~~~L 477 (717)
||++|+++
T Consensus 90 e~l~g~~~ 97 (288)
T 3d1u_A 90 EWVDERPP 97 (288)
T ss_dssp ECCCCCCC
T ss_pred EecccCCC
Confidence 99998875
No 424
>3ovc_A Hygromycin-B 4-O-kinase; aminoglycoside phosphotransferase, structural genomics, PSI- protein structure initiative; HET: HY0 PE4; 1.95A {Escherichia coli} PDB: 3tyk_A*
Probab=97.85 E-value=1.4e-05 Score=83.31 Aligned_cols=77 Identities=10% Similarity=0.078 Sum_probs=53.4
Q ss_pred ccccccCcccccceEEEEeCCCchhhhHHhHhhhhhHHHHHHHHHHHHhcCCCCc--eeEEEEeeccccCCCCceEEEEE
Q 005045 392 SKENLIGTGSFGSVYKGTLGDGTIVAIKVLKLQQQGALKSFIDECNALKSTRHRN--ILRVITACSSVDLEGNDFKALVF 469 (717)
Q Consensus 392 ~~~~~ig~g~~g~v~~~~~~~~~~vavK~~~~~~~~~~~~~~~e~~~l~~l~h~n--i~~~~~~~~~~~~~~~~~~~lv~ 469 (717)
...+.++.|....+|.... +++.+++|..... ..+..|+.+++.+.... +.+++..+.. ..+..++||
T Consensus 44 ~~i~~l~gG~~n~~y~v~~-~g~~~vlK~~~~~-----~~~~~E~~~l~~L~~~gvpvP~vl~~~~~----~~g~~~lv~ 113 (362)
T 3ovc_A 44 SDLMQLSEGEESRAFSFDV-GGRGYVLRVNSCA-----DGFYKDRYVYRHFASAALPIPEVLDIGEF----SESLTYCIS 113 (362)
T ss_dssp EEEEEEEECSSEEEEEEEE-TTEEEEEEEESCC-----HHHHHHHHHHHHHCCSSSCCCCEEEEEES----SSSCEEEEE
T ss_pred ceEEECCCCCcceEEEEEE-CCcEEEEEeCCch-----hhHHHHHHHHHHHHhcCCCCceEEEeccC----CCCCeEEEE
Confidence 3456788888999998875 4778888876432 24777888888775433 4555655432 124689999
Q ss_pred ecCCCCChh
Q 005045 470 EFMSNGNLD 478 (717)
Q Consensus 470 e~~~~~~L~ 478 (717)
||++|.++.
T Consensus 114 e~l~G~~l~ 122 (362)
T 3ovc_A 114 RRAQGVTLQ 122 (362)
T ss_dssp ECCCSEETT
T ss_pred EecCCCCcc
Confidence 999987664
No 425
>3ats_A Putative uncharacterized protein; hypothetical protein, putative aminoglycoside phosphortransf transferase; 1.67A {Mycobacterium tuberculosis} PDB: 3att_A*
Probab=97.71 E-value=1.9e-05 Score=82.35 Aligned_cols=85 Identities=9% Similarity=-0.037 Sum_probs=53.5
Q ss_pred ccccc-CcccccceEEEEeC-------CCchhhhHHhHhhh---hhHHHHHHHHHHHHhcCC---CCceeEEEEeecccc
Q 005045 393 KENLI-GTGSFGSVYKGTLG-------DGTIVAIKVLKLQQ---QGALKSFIDECNALKSTR---HRNILRVITACSSVD 458 (717)
Q Consensus 393 ~~~~i-g~g~~g~v~~~~~~-------~~~~vavK~~~~~~---~~~~~~~~~e~~~l~~l~---h~ni~~~~~~~~~~~ 458 (717)
..+.+ +.|....+|..... +++.+++|...... ......+..|+.+++.+. ...+.+++..+....
T Consensus 24 ~~~~l~~~G~~n~~y~v~~~~~~~~~~~~~~~vlR~~~~~~~~~~~~~~~~~~E~~~l~~L~~~~~vpvP~v~~~~~~~~ 103 (357)
T 3ats_A 24 VESGVDSTGMSSETIILTARWQQDGRSIQQKLVARVAPAAEDVPVFPTYRLDHQFEVIRLVGELTDVPVPRVRWIETTGD 103 (357)
T ss_dssp EEEEECTTSSEEEEEEEEEEEEETTEEEEEEEEEEECCCGGGCCSSSCCCHHHHHHHHHHHHHHCCSCCCCEEEEECSST
T ss_pred EEEECCCCCccceEEEEEEecccCCCCCCceEEEEeCCCCCccccCchhHHHHHHHHHHHHhhcCCCCCCcEEEEccCCC
Confidence 34567 78888899988753 26678888765332 001245667888877773 234666776643321
Q ss_pred CCCCceEEEEEecCCCCChhh
Q 005045 459 LEGNDFKALVFEFMSNGNLDQ 479 (717)
Q Consensus 459 ~~~~~~~~lv~e~~~~~~L~~ 479 (717)
..+..++||||++|.++.+
T Consensus 104 --~~g~~~~v~e~l~G~~l~~ 122 (357)
T 3ats_A 104 --VLGTPFFLMDYVEGVVPPD 122 (357)
T ss_dssp --TTSSCEEEEECCCCBCCCB
T ss_pred --ccCCceEEEEecCCCChhh
Confidence 1135689999999877654
No 426
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=97.68 E-value=2.2e-05 Score=72.82 Aligned_cols=69 Identities=13% Similarity=0.278 Sum_probs=29.9
Q ss_pred CCCCCCCEEeccCc-ccccc----CCCCccCCCCCCeeeccccccCCcccCchhhhhhhccCCCCCEEEeecCccc
Q 005045 176 SNASNLQVLDFAEN-GLTGT----IPGNFGSLKDLVRLNFDQNELGSREIGDLNFLKFLANCTSLEVLGLARNSFG 246 (717)
Q Consensus 176 ~~l~~L~~L~l~~N-~l~~~----~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~l~~L~~L~L~~N~l~ 246 (717)
.+-+.|++|+|++| .|... +...+...+.|+.|+|++|.|.+.+...+ ...+..-+.|+.|+|+.|.|.
T Consensus 38 ~~n~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~igd~ga~al--A~aL~~N~tL~~L~L~~N~Ig 111 (197)
T 1pgv_A 38 EDDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGL--IELIETSPSLRVLNVESNFLT 111 (197)
T ss_dssp TTCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTH--HHHHHHCSSCCEEECCSSBCC
T ss_pred hcCCCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCCCChHHHHHH--HHHHhcCCccCeEecCCCcCC
Confidence 33445555555553 44321 12233334445555555555544332222 233334444444444444444
No 427
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=97.52 E-value=2.2e-05 Score=72.81 Aligned_cols=118 Identities=15% Similarity=0.208 Sum_probs=70.5
Q ss_pred ccCCCCCCeeecccc-ccCCcccCchhhhhhhccCCCCCEEEeecCcccCcCchhhhhc---cccccEEecCCCccCCC-
Q 005045 199 FGSLKDLVRLNFDQN-ELGSREIGDLNFLKFLANCTSLEVLGLARNSFGGEMPISIANL---STHLRRLTMGENLMHGN- 273 (717)
Q Consensus 199 ~~~l~~L~~L~l~~N-~l~~~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~---~~~L~~L~l~~N~l~~~- 273 (717)
+..-+.|++|+|++| .|...++. .+...+..-+.|+.|+|++|.|.+.....+... .+.|++|+|++|.|...
T Consensus 37 l~~n~~L~~L~L~~nn~igd~ga~--~la~aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig~~G 114 (197)
T 1pgv_A 37 REDDTDLKEVNINNMKRVSKERIR--SLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPEL 114 (197)
T ss_dssp HTTCSSCCEEECTTCCSSCHHHHH--HHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHH
T ss_pred HhcCCCccEEECCCCCCCCHHHHH--HHHHHHhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCCHHH
Confidence 345567777777774 66654322 234556666777777777777775443333322 14677777777777643
Q ss_pred ---CCccccCCCCCCEEEccCCc---Cccc----cchhhhcCCCCCeEEcccCcC
Q 005045 274 ---IPVGIGNLVNLNLLGLEGNN---LSGS----VPEVIGRLNKLEGLGLNVNKF 318 (717)
Q Consensus 274 ---~~~~~~~l~~L~~L~L~~N~---l~~~----~~~~~~~l~~L~~L~Ls~N~l 318 (717)
+..++..-+.|++|+|++|. +... +...+..-+.|+.|+++.|.+
T Consensus 115 a~ala~aL~~N~tL~~L~L~n~~~~~ig~~g~~~ia~aL~~N~tL~~L~l~~~~~ 169 (197)
T 1pgv_A 115 LARLLRSTLVTQSIVEFKADNQRQSVLGNQVEMDMMMAIEENESLLRVGISFASM 169 (197)
T ss_dssp HHHHHHHTTTTCCCSEEECCCCSSCCCCHHHHHHHHHHHHHCSSCCEEECCCCCH
T ss_pred HHHHHHHHhhCCceeEEECCCCcCcCcCHHHHHHHHHHHHhCCCcCeEeccCCCc
Confidence 22345556667777777553 3321 233455567777777776653
No 428
>2olc_A MTR kinase, methylthioribose kinase; kinase ADP-2HO complex, transferase; HET: CPS ADP; 2.00A {Bacillus subtilis} SCOP: d.144.1.6 PDB: 2pu8_A* 2pui_A* 2pul_A* 2pun_A* 2pup_A*
Probab=97.40 E-value=0.00011 Score=77.70 Aligned_cols=76 Identities=18% Similarity=0.098 Sum_probs=47.4
Q ss_pred cccccCcccccceEEEEeC-CCchhhhHHhHhhhh-------hHHHHHHHHHHHHhcCC---CCceeEEEEeeccccCCC
Q 005045 393 KENLIGTGSFGSVYKGTLG-DGTIVAIKVLKLQQQ-------GALKSFIDECNALKSTR---HRNILRVITACSSVDLEG 461 (717)
Q Consensus 393 ~~~~ig~g~~g~v~~~~~~-~~~~vavK~~~~~~~-------~~~~~~~~e~~~l~~l~---h~ni~~~~~~~~~~~~~~ 461 (717)
..+.+|.|..+.||++... +++.+++|....... ....++..|.++++.+. ...+++++.+.
T Consensus 34 ~~~~lg~G~~n~vyrv~~~~~~~~~vvK~~~~~~r~~~~~~~~~~~r~~~E~~~L~~l~~~~~~~vP~~~~~d------- 106 (397)
T 2olc_A 34 TCQEIGDGNLNYVFHIYDQEHDRALIIKQAVPYAKVVGESWPLTIDRARIESSALIRQGEHVPHLVPRVFYSD------- 106 (397)
T ss_dssp EEEECCSSSSEEEEEEEC----CEEEEEEECCC-------CCCCTTHHHHHHHHHHHHHTTCGGGSCCEEEEE-------
T ss_pred EEEECCCCceEEEEEEEECCCCcEEEEEecchhhcccCCCCcCcHHHHHHHHHHHHHhhhhCCCCcCeEEEEc-------
Confidence 3567899999999999754 567889986532111 12345677888887763 23344555442
Q ss_pred CceEEEEEecCCCC
Q 005045 462 NDFKALVFEFMSNG 475 (717)
Q Consensus 462 ~~~~~lv~e~~~~~ 475 (717)
.+..++|||++++.
T Consensus 107 ~~~~~lvmE~l~g~ 120 (397)
T 2olc_A 107 TEMAVTVMEDLSHL 120 (397)
T ss_dssp TTTTEEEECCCTTS
T ss_pred CCccEEEEEeCCCc
Confidence 12357999999764
No 429
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=97.28 E-value=0.00043 Score=59.94 Aligned_cols=55 Identities=27% Similarity=0.268 Sum_probs=25.7
Q ss_pred EEEccCcccc-ccCCccccCCCCCCEEeccCCcCcccCChhhhccCCCCeEeccCCCC
Q 005045 62 IIGLGGSNLT-GNVPAWIGNFSSLKALSLAWNNLRGSIPNELGQLSGLGFFTLYGNFI 118 (717)
Q Consensus 62 ~L~L~~n~l~-~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~i 118 (717)
.++.+++.++ ..+|..+. .+|+.|+|++|+|+.+.++.|..+++|++|+|++|.+
T Consensus 12 ~v~Cs~~~L~~~~vP~~lp--~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~ 67 (130)
T 3rfe_A 12 LVDCGRRGLTWASLPTAFP--VDTTELVLTGNNLTALPPGLLDALPALRTAHLGANPW 67 (130)
T ss_dssp EEECCSSCCCTTTSCSCCC--TTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSCC
T ss_pred EEEeCCCCCccccCCCCCC--cCCCEEECCCCcCCccChhhhhhccccCEEEecCCCe
Confidence 4555555554 23333232 2355555555555544444444455555544444444
No 430
>2q83_A YTAA protein; 2635576, structural genomics, joint center for structu genomics, JCSG, protein structure initiative, PSI-2, transf; HET: ADN CIT UNL; 2.50A {Bacillus subtilis}
Probab=97.23 E-value=0.00064 Score=70.07 Aligned_cols=30 Identities=23% Similarity=0.296 Sum_probs=27.2
Q ss_pred CCeeecCCCCCCEEeCCCCceEEeeeccch
Q 005045 519 TPIAHCDLKPSNVLLDKDMTAHVGDFGLAK 548 (717)
Q Consensus 519 ~~ivH~dlkp~NIll~~~~~~kl~Dfg~~~ 548 (717)
..++|||+++.||+++.++.+.|+||+.+.
T Consensus 222 ~~l~HgD~~~~Nil~~~~~~~~lIDfe~a~ 251 (346)
T 2q83_A 222 PNLCHQDYGTGNTLLGENEQIWVIDLDTVS 251 (346)
T ss_dssp CCEECSSCSTTSEEECGGGCEEECCCTTCE
T ss_pred CceecCCCCcccEEEeCCCcEEEEehhhcc
Confidence 589999999999999888899999998765
No 431
>3f7w_A Putative fructosamine-3-kinase; YP_290396.1, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI-2; 1.85A {Thermobifida fusca YX}
Probab=97.22 E-value=0.00025 Score=71.20 Aligned_cols=79 Identities=18% Similarity=0.119 Sum_probs=56.2
Q ss_pred ccccccccCcccccceEEEEeCCCchhhhHHhHhhhhhHHHHHHHHHHHHhcCCC---CceeEEEEeeccccCCCCceEE
Q 005045 390 NFSKENLIGTGSFGSVYKGTLGDGTIVAIKVLKLQQQGALKSFIDECNALKSTRH---RNILRVITACSSVDLEGNDFKA 466 (717)
Q Consensus 390 ~y~~~~~ig~g~~g~v~~~~~~~~~~vavK~~~~~~~~~~~~~~~e~~~l~~l~h---~ni~~~~~~~~~~~~~~~~~~~ 466 (717)
+..-++.+|.|..+.||+....+|+.|++|+...........+..|++.|+.+.- --++++++.. ..+
T Consensus 16 ~v~~v~~~g~G~~~~vyrv~l~DG~~~~vK~~~~~~~~~~~~~~~Ea~~L~~L~~~~~vpvP~v~~~~---------~~~ 86 (288)
T 3f7w_A 16 EVAAVAERGHSHRWHLYRVELADGTPLFVKALPDDAPALDGLFRAEALGLDWLGRSFGSPVPQVAGWD---------DRT 86 (288)
T ss_dssp CEEEEEEEEEETTEEEEEEEETTSCEEEEEECCTTCCCCTTHHHHHHHHHHHHTCSTTCCSCCEEEEE---------TTE
T ss_pred CeEEEEecCCCCCeEEEEEEECCCCEEEEEEeCCCCcchhhHHHHHHHHHHHHHhhCCCCcceEEecc---------Cce
Confidence 3445677899999999999988999999998664443334567889988887732 2345555542 237
Q ss_pred EEEecCCCCCh
Q 005045 467 LVFEFMSNGNL 477 (717)
Q Consensus 467 lv~e~~~~~~L 477 (717)
+||||++++..
T Consensus 87 lv~e~l~~~~~ 97 (288)
T 3f7w_A 87 LAMEWVDERPP 97 (288)
T ss_dssp EEEECCCCCCC
T ss_pred EEEEeecccCC
Confidence 89999876643
No 432
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=97.08 E-value=0.00075 Score=58.42 Aligned_cols=58 Identities=19% Similarity=0.172 Sum_probs=41.0
Q ss_pred eEEcccCcCC--CCCCcccccccccceeecccccccccCCcCccCcCCCceEEeecccCCCCC
Q 005045 310 GLGLNVNKFS--GLIPSSLGNLTILTRLWMEENRLEGSIPPSLGNCQKLLVLNLSSNDLNGTI 370 (717)
Q Consensus 310 ~L~Ls~N~l~--~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~ 370 (717)
.++.+++.++ .+ |..+. ++|+.|+|++|+|+...+..|..+++|+.|+|++|+|...+
T Consensus 12 ~v~Cs~~~L~~~~v-P~~lp--~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~~CdC 71 (130)
T 3rfe_A 12 LVDCGRRGLTWASL-PTAFP--VDTTELVLTGNNLTALPPGLLDALPALRTAHLGANPWRCDC 71 (130)
T ss_dssp EEECCSSCCCTTTS-CSCCC--TTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSCCBCSG
T ss_pred EEEeCCCCCccccC-CCCCC--cCCCEEECCCCcCCccChhhhhhccccCEEEecCCCeeccC
Confidence 6777777776 33 43322 35788888888888555566788888888888888887544
No 433
>3jr1_A Putative fructosamine-3-kinase; YP_719053.1, structural genomics, joint center for structural genomics, JCSG; HET: MSE UNL; 2.32A {Haemophilus somnus 129PT}
Probab=96.84 E-value=0.0029 Score=63.81 Aligned_cols=76 Identities=14% Similarity=0.128 Sum_probs=55.4
Q ss_pred cccccCcccccceEEEEeCCCchhhhHHhHhhhhhHHHHHHHHHHHHhcCC---CCceeEEEEeeccccCCCCceEEEEE
Q 005045 393 KENLIGTGSFGSVYKGTLGDGTIVAIKVLKLQQQGALKSFIDECNALKSTR---HRNILRVITACSSVDLEGNDFKALVF 469 (717)
Q Consensus 393 ~~~~ig~g~~g~v~~~~~~~~~~vavK~~~~~~~~~~~~~~~e~~~l~~l~---h~ni~~~~~~~~~~~~~~~~~~~lv~ 469 (717)
..+.++.|....+|.... +++.+++|+.... ....+..|++.++.+. ...+++++..+.. .+..++||
T Consensus 40 ~~~~l~gG~~n~~y~v~~-~~~~~vlK~~~~~---~~~~~~~E~~~L~~L~~~~~v~VP~vl~~~~~-----~g~~~lvm 110 (312)
T 3jr1_A 40 HKEKLYSGEMNEIWLIND-EVQTVFVKINERS---YRSMFRAEADQLALLAKTNSINVPLVYGIGNS-----QGHSFLLL 110 (312)
T ss_dssp EEEEECCSSSSEEEEEES-SSCEEEEEEEEGG---GHHHHHHHHHHHHHHHHTTSSBCCCEEEEEEC-----SSEEEEEE
T ss_pred eeEEeCCccceeeeEEEE-CCCeEEEEeCCcc---cHHHHHHHHHHHHHHHhhCCCCcceEEEEeec-----CCceEEEE
Confidence 346688899999999886 3567788876533 2456778888887772 3567777777532 35789999
Q ss_pred ecCCCCCh
Q 005045 470 EFMSNGNL 477 (717)
Q Consensus 470 e~~~~~~L 477 (717)
||++|.++
T Consensus 111 e~l~G~~~ 118 (312)
T 3jr1_A 111 EALNKSKN 118 (312)
T ss_dssp ECCCCCCC
T ss_pred EeccCCCC
Confidence 99998765
No 434
>2pyw_A Uncharacterized protein; 5-methylthioribose kinase, plant methionine recycling, refol transferase; HET: SR1 ADP; 1.90A {Arabidopsis thaliana}
Probab=96.80 E-value=0.0017 Score=69.03 Aligned_cols=30 Identities=23% Similarity=0.396 Sum_probs=26.7
Q ss_pred CCeeecCCCCCCEEeCCCCceEEeeeccchh
Q 005045 519 TPIAHCDLKPSNVLLDKDMTAHVGDFGLAKF 549 (717)
Q Consensus 519 ~~ivH~dlkp~NIll~~~~~~kl~Dfg~~~~ 549 (717)
..++|||++|.|||++.++ ++++||+.+..
T Consensus 232 ~~liHGDl~~~Nil~~~~~-~~lID~e~a~~ 261 (420)
T 2pyw_A 232 QALIHGDLHTGSVMVTQDS-TQVIDPEFSFY 261 (420)
T ss_dssp CEEECSCCSGGGEEECSSC-EEECCCTTCEE
T ss_pred CeEEecCCCCCcEEEeCCC-CEEEeCccccc
Confidence 4899999999999998776 99999988764
No 435
>3dxq_A Choline/ethanolamine kinase family protein; NP_106042.1, STR genomics, joint center for structural genomics, JCSG, prote structure initiative; HET: MSE; 2.55A {Mesorhizobium loti}
Probab=96.75 E-value=0.0014 Score=66.05 Aligned_cols=30 Identities=23% Similarity=0.353 Sum_probs=25.2
Q ss_pred CCeeecCCCCCCEEeCCCCceEEeeeccchh
Q 005045 519 TPIAHCDLKPSNVLLDKDMTAHVGDFGLAKF 549 (717)
Q Consensus 519 ~~ivH~dlkp~NIll~~~~~~kl~Dfg~~~~ 549 (717)
..++|+|+.+.||+ ..++.+.++||+.+..
T Consensus 173 ~~l~HgDl~~~Nil-~~~~~~~lID~e~a~~ 202 (301)
T 3dxq_A 173 LAACHCDPLCENFL-DTGERMWIVDWEYSGM 202 (301)
T ss_dssp CEEECSCCCGGGEE-ECSSCEEECCCTTCEE
T ss_pred ceeeccCCCcCCEE-ECCCCEEEEecccccC
Confidence 35899999999999 5667889999987653
No 436
>2yle_A Protein spire homolog 1; actin-binding protein, actin polymerization; 1.80A {Homo sapiens} PDB: 2ylf_A 3r7g_A 3rbw_A
Probab=96.68 E-value=0.0065 Score=56.53 Aligned_cols=98 Identities=12% Similarity=0.092 Sum_probs=66.1
Q ss_pred ChhhhccCCCCCcccccccCHHHHHHHHHHHHHHHHHHHhcCCCCeeecCCCCCCEEeCCCCceEEeeeccchhcccccC
Q 005045 476 NLDQWLHPSPAEHYQFKKLSVIQRLNIAIDVASALDYLHHHCDTPIAHCDLKPSNVLLDKDMTAHVGDFGLAKFLFEISD 555 (717)
Q Consensus 476 ~L~~~l~~~~~~~~~~~~~~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~dlkp~NIll~~~~~~kl~Dfg~~~~~~~~~~ 555 (717)
+|.++++... ..+++.+++.++.|.+.+|.-.-.. +.-..+=+.|..|++..+|.|.+.+ +.+.
T Consensus 34 SL~eIL~~~~------~PlsEEqaWALc~Qc~~~L~~~~~~--~~~~~~i~~~~~i~l~~dG~V~f~~-~~s~------- 97 (229)
T 2yle_A 34 SLEEILRLYN------QPINEEQAWAVCYQCCGSLRAAARR--RQPRHRVRSAAQIRVWRDGAVTLAP-AADD------- 97 (229)
T ss_dssp EHHHHHHHHT------SCCCHHHHHHHHHHHHHHHHHHHHT--TCCCCCCCSGGGEEEETTSCEEECC-C----------
T ss_pred cHHHHHHHcC------CCcCHHHHHHHHHHHHHHHHhhhhc--ccCCceecCCcceEEecCCceeccc-cccc-------
Confidence 6888887544 6899999999999999998776211 0112334567999999999988764 1110
Q ss_pred CCCCCcceeecccccccccCCCccCCCCCcccchhhHHHHHHHHHh
Q 005045 556 NPSKNQTVSIGLKGSIGYIPPEHMNGQVSILGDIYSYGILLLEMFT 601 (717)
Q Consensus 556 ~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~sDvwslG~vl~ellt 601 (717)
.....+.|||......+.+.=|||||+++|.-+-
T Consensus 98 ------------~~~~~~~~pe~~~~~~te~~~IysLG~tLY~ALD 131 (229)
T 2yle_A 98 ------------AGEPPPVAGKLGYSQCMETEVIESLGIIIYKALD 131 (229)
T ss_dssp ---------------------CCSSSSSCHHHHHHHHHHHHHHHHT
T ss_pred ------------ccccCCCChhhccccchHHHHHHHHHHHHHHHhh
Confidence 1223467888875566788899999999999885
No 437
>3csv_A Aminoglycoside phosphotransferase; YP_614837.1, phosphotransferase enzyme family, structural genomics, JOIN for structural genomics, JCSG; HET: MSE; 2.15A {Silicibacter SP}
Probab=96.66 E-value=0.003 Score=64.77 Aligned_cols=31 Identities=29% Similarity=0.306 Sum_probs=27.0
Q ss_pred CCeeecCCCCCCEEeCCC----CceEEeeeccchh
Q 005045 519 TPIAHCDLKPSNVLLDKD----MTAHVGDFGLAKF 549 (717)
Q Consensus 519 ~~ivH~dlkp~NIll~~~----~~~kl~Dfg~~~~ 549 (717)
..++|||+.+.|||++.+ +.+.|+||+.+..
T Consensus 183 ~~lvHgD~~~~Nil~~~~~~~~~~~~lIDf~~a~~ 217 (333)
T 3csv_A 183 MVFVHRDFHAQNLLWLPEREGLARVGVIDFQDAKL 217 (333)
T ss_dssp CEEECSCCSGGGEEECTTSCGGGGEEECCCTTCEE
T ss_pred CeeEeCCcCcccEEeccCcCCCCCeEEEeCCCcCc
Confidence 479999999999999874 6899999987764
No 438
>2ppq_A HSK, HK, homoserine kinase; structural genomics, MCSG, PSI-2, protein structure initiative; 2.00A {Agrobacterium tumefaciens str} SCOP: d.144.1.6
Probab=96.51 E-value=0.0026 Score=64.83 Aligned_cols=152 Identities=14% Similarity=0.054 Sum_probs=76.8
Q ss_pred ccccCcccccceEEEEeCCCchhhhHHhHhhhhhHHHHHHHHHHHHhcCCCCc--eeEEEEeecccc-CCCCceEEEEEe
Q 005045 394 ENLIGTGSFGSVYKGTLGDGTIVAIKVLKLQQQGALKSFIDECNALKSTRHRN--ILRVITACSSVD-LEGNDFKALVFE 470 (717)
Q Consensus 394 ~~~ig~g~~g~v~~~~~~~~~~vavK~~~~~~~~~~~~~~~e~~~l~~l~h~n--i~~~~~~~~~~~-~~~~~~~~lv~e 470 (717)
.+.++.|....+|.....+| .+++|+..... ....+..|..+++.+.... +++++....... ....+..+++|+
T Consensus 27 ~~~i~~G~~n~~~~v~~~~g-~~vlk~~~~~~--~~~~l~~e~~~l~~L~~~g~~vP~~~~~~~g~~~~~~~g~~~~l~~ 103 (322)
T 2ppq_A 27 YKGIAEGVENSNFLLHTTKD-PLILTLYEKRV--EKNDLPFFLGLMQHLAAKGLSCPLPLPRKDGELLGELSGRPAALIS 103 (322)
T ss_dssp EEEECC---EEEEEEEESSC-CEEEEEECC-----CCHHHHHHHHHHHHHHTTCCCCCBCCBTTCCSCEEETTEEEEEEE
T ss_pred eeccCCCcccceEEEEeCCc-cEEEEEeCCCC--CHHHHHHHHHHHHHHHHCCCCCCcccCCCCCCEEEEECCEEEEEEE
Confidence 45567788889999887555 57788776421 1234455677666652212 233332210000 011245789999
Q ss_pred cCCCCChhhh--------------cc----CCCCCc-ccccccCHHHHH------------HHHHHHHHHHHHHHhc---
Q 005045 471 FMSNGNLDQW--------------LH----PSPAEH-YQFKKLSVIQRL------------NIAIDVASALDYLHHH--- 516 (717)
Q Consensus 471 ~~~~~~L~~~--------------l~----~~~~~~-~~~~~~~~~~~~------------~i~~~i~~~l~~LH~~--- 516 (717)
|++|..+... ++ .-.... .......|.... .+...+...++.++..
T Consensus 104 ~l~G~~~~~~~~~~~~~~g~~La~lH~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~l~~~l~~~~~~l~~~~~~ 183 (322)
T 2ppq_A 104 FLEGMWLRKPEAKHCREVGKALAAMHLASEGFEIKRPNALSVDGWKVLWDKSEERADEVEKGLREEIRPEIDYLAAHWPK 183 (322)
T ss_dssp CCCCBCCSSCCHHHHHHHHHHHHHHHHHTTTCCCCCBCTTSHHHHHHHHHHHGGGGGGTSTTHHHHHHHHHHHHHHHCCC
T ss_pred eCCCcCCCCCCHHHHHHHHHHHHHHHHHhccCCCcccCccChHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHhhCcc
Confidence 9988654210 11 000000 000000111100 0011234455555532
Q ss_pred -CCCCeeecCCCCCCEEeCCCCceEEeeeccch
Q 005045 517 -CDTPIAHCDLKPSNVLLDKDMTAHVGDFGLAK 548 (717)
Q Consensus 517 -~~~~ivH~dlkp~NIll~~~~~~kl~Dfg~~~ 548 (717)
...+++|+|+++.||+++.++.+.|+||+.+.
T Consensus 184 ~~~~~liHgDl~~~Nil~~~~~~~~lIDf~~a~ 216 (322)
T 2ppq_A 184 DLPAGVIHADLFQDNVFFLGDELSGLIDFYFAC 216 (322)
T ss_dssp SSCEEEECSCCCGGGEEEETTEEEEECCCTTCE
T ss_pred cCCcccCCCCCCccCEEEeCCceEEEecchhcc
Confidence 13479999999999999877666899998765
No 439
>1zyl_A Hypothetical protein YIHE; putative protein kinase, structural genomics, PSI, protein structure initiative; 2.80A {Escherichia coli} SCOP: d.144.1.6
Probab=96.51 E-value=0.0025 Score=65.12 Aligned_cols=80 Identities=11% Similarity=0.103 Sum_probs=46.6
Q ss_pred cccCcccccceEEEEeCCCchhhhHHhHhhhhhHHHHHHHHHHHHhcCCC--CceeEEEEeecccc-CCCCceEEEEEec
Q 005045 395 NLIGTGSFGSVYKGTLGDGTIVAIKVLKLQQQGALKSFIDECNALKSTRH--RNILRVITACSSVD-LEGNDFKALVFEF 471 (717)
Q Consensus 395 ~~ig~g~~g~v~~~~~~~~~~vavK~~~~~~~~~~~~~~~e~~~l~~l~h--~ni~~~~~~~~~~~-~~~~~~~~lv~e~ 471 (717)
..++ |....||.+...+|+.+++|....... ....+..|..+++.+.. -.+++++.. .... ....+..+++|++
T Consensus 32 ~~l~-g~~n~~y~v~~~~g~~~vlK~~~~~~~-~~~~~~~E~~~~~~L~~~g~~vp~~~~~-~g~~~~~~~g~~~~l~~~ 108 (328)
T 1zyl_A 32 TPLN-SYENRVYQFQDEDRRRFVVKFYRPERW-TADQILEEHQFALQLVNDEVPVAAPVAF-NGQTLLNHQGFYFAVFPS 108 (328)
T ss_dssp EEEC-CSSSEEEEECCTTCCCEEEEEECTTTS-CHHHHHHHHHHHHHHHHTTCSBCCCCCB-TTBSCEEETTEEEEEEEC
T ss_pred Eeec-CcccceEEEEcCCCCEEEEEEcCCCCC-CHHHHHHHHHHHHHHHHcCCeecceeec-CCcEEEEECCEEEEEEEe
Confidence 3455 777889988776777889998763211 12445567777766632 123333332 1000 1123467899999
Q ss_pred CCCCCh
Q 005045 472 MSNGNL 477 (717)
Q Consensus 472 ~~~~~L 477 (717)
++|.++
T Consensus 109 i~G~~~ 114 (328)
T 1zyl_A 109 VGGRQF 114 (328)
T ss_dssp CCCEEC
T ss_pred cCCCCC
Confidence 987543
No 440
>2qg7_A Ethanolamine kinase PV091845; malaria, SGC, structural genomics consortium, transferase; 2.41A {Plasmodium vivax}
Probab=96.04 E-value=0.0065 Score=64.85 Aligned_cols=74 Identities=16% Similarity=0.075 Sum_probs=44.3
Q ss_pred ccccCcccccceEEEEeCC-CchhhhHHhHhhhhhHHHHHHHHHHHHhcCCCCce-eEEEEeeccccCCCCceEEEEEec
Q 005045 394 ENLIGTGSFGSVYKGTLGD-GTIVAIKVLKLQQQGALKSFIDECNALKSTRHRNI-LRVITACSSVDLEGNDFKALVFEF 471 (717)
Q Consensus 394 ~~~ig~g~~g~v~~~~~~~-~~~vavK~~~~~~~~~~~~~~~e~~~l~~l~h~ni-~~~~~~~~~~~~~~~~~~~lv~e~ 471 (717)
.+.|+.|-...+|++...+ ++.+++|+......... ....|..+++.+...++ +++++.+ . + ..||||
T Consensus 113 i~~lsgG~tN~~y~v~~~~~~~~~vLRi~g~~~~~~i-dR~~E~~vl~~L~~~gl~P~ll~~~-----~-~---G~v~e~ 182 (458)
T 2qg7_A 113 FQIINGGITNILIKVKDMSKQAKYLIRLYGPKTDEII-NREREKKISCILYNKNIAKKIYVFF-----T-N---GRIEEF 182 (458)
T ss_dssp EEEECC--CEEEEEEEETTTTEEEEEEEECC-CCSCS-CHHHHHHHHHHHTTSSSBCCEEEEE-----T-T---EEEEEC
T ss_pred EEEcCCCeEeEEEEEEECCCCceEEEEECCCChhhhc-CHHHHHHHHHHHHhcCCCCCEEEEe-----C-C---eEEEEe
Confidence 4567777788999988654 47788887643221111 12478888888754444 4555553 1 1 359999
Q ss_pred CCCCCh
Q 005045 472 MSNGNL 477 (717)
Q Consensus 472 ~~~~~L 477 (717)
++|.++
T Consensus 183 I~G~~l 188 (458)
T 2qg7_A 183 MDGYAL 188 (458)
T ss_dssp CCSEEC
T ss_pred eCCccC
Confidence 987655
No 441
>3feg_A Choline/ethanolamine kinase; non-protein kinase, choline kinase, structural genomics CONS SGC, hemicholinium-3, phosphorylation; HET: HC7 ADP AMP; 1.30A {Homo sapiens} PDB: 3lq3_A* 2ig7_A*
Probab=96.00 E-value=0.0047 Score=64.13 Aligned_cols=146 Identities=10% Similarity=0.096 Sum_probs=78.1
Q ss_pred ccccCcccccceEEEEeC--------CCchhhhHHhHhhhhhHHHHHHHHHHHHhcCC-CCceeEEEEeeccccCCCCce
Q 005045 394 ENLIGTGSFGSVYKGTLG--------DGTIVAIKVLKLQQQGALKSFIDECNALKSTR-HRNILRVITACSSVDLEGNDF 464 (717)
Q Consensus 394 ~~~ig~g~~g~v~~~~~~--------~~~~vavK~~~~~~~~~~~~~~~e~~~l~~l~-h~ni~~~~~~~~~~~~~~~~~ 464 (717)
.+.+.-|-...+|++... +++.+++|+.-... .......+|.++++.+. +.-.+++++.+ ++
T Consensus 55 v~~lsGG~TN~~y~v~~~~~~~~~~~~~~~~vlR~~g~~~-~~~~~~~rE~~vl~~L~~~gv~P~ll~~~-----~~--- 125 (379)
T 3feg_A 55 VYPVSGGLSNLLFRCSLPDHLPSVGEEPREVLLRLYGAIL-QGVDSLVLESVMFAILAERSLGPQLYGVF-----PE--- 125 (379)
T ss_dssp CEEC-----CCEEEEECCTTSCCCSSCCSEEEEEECC----CCHHHHHHHHHHHHHHHHTTSSCCEEEEE-----TT---
T ss_pred EEEcCCcccccEEEEEeCCCccccCCCCCeEEEEECCCcc-chHHHHHHHHHHHHHHHhcCCCCeEEEEc-----CC---
Confidence 345666778889998864 24678888863321 12344557888887763 21124555553 22
Q ss_pred EEEEEecCCCCChhhh-----------------ccCCCCCcccccccCHHHHHHHHHHHHH-------------------
Q 005045 465 KALVFEFMSNGNLDQW-----------------LHPSPAEHYQFKKLSVIQRLNIAIDVAS------------------- 508 (717)
Q Consensus 465 ~~lv~e~~~~~~L~~~-----------------l~~~~~~~~~~~~~~~~~~~~i~~~i~~------------------- 508 (717)
.+||||++|.++..- ++............-+..+.++..++..
T Consensus 126 -g~v~e~i~G~~l~~~~l~~p~~~~~ia~~La~LH~~~~~~~~~~~~l~~~i~~w~~~~~~~~~~~~~~~~~~~~~~l~~ 204 (379)
T 3feg_A 126 -GRLEQYIPSRPLKTQELREPVLSAAIATKMAQFHGMEMPFTKEPHWLFGTMERYLKQIQDLPPTGLPEMNLLEMYSLKD 204 (379)
T ss_dssp -EEEEECCSEEECCGGGGGCHHHHHHHHHHHHHHHTCCCSSCCSCCHHHHHHHHHHHHHHHCCCCSCCSCCHHHHTTHHH
T ss_pred -ccEEEEecCccCChhHhCCHHHHHHHHHHHHHHhCCCCCCCCCcccHHHHHHHHHHHHHhccCcccchhhhhhhHHHHH
Confidence 299999998665421 1111000000001113344444443321
Q ss_pred HHHHHHhc-----CCCCeeecCCCCCCEEeCCC----CceEEeeeccchh
Q 005045 509 ALDYLHHH-----CDTPIAHCDLKPSNVLLDKD----MTAHVGDFGLAKF 549 (717)
Q Consensus 509 ~l~~LH~~-----~~~~ivH~dlkp~NIll~~~----~~~kl~Dfg~~~~ 549 (717)
.++.|.+. ....++|+|+.+.||+++.+ +.+.++||..+..
T Consensus 205 ~~~~L~~~L~~~~~~~~~~H~D~~~~Nil~~~~~~~~~~~~~IDwE~a~~ 254 (379)
T 3feg_A 205 EMGNLRKLLESTPSPVVFCHNDIQEGNILLLSEPENADSLMLVDFEYSSY 254 (379)
T ss_dssp HHHHHHHHHHTSCCCEEEECSCCCGGGEEEESCC---CCEEECCCTTCEE
T ss_pred HHHHHHHHHhhcCCCcEEEcCCCCCCeEEEcCCCCccCcEEEEecccCCc
Confidence 22333211 12369999999999999876 7899999987753
No 442
>1nw1_A Choline kinase (49.2 KD); phospholipid synthesis, protein kinase fold, transferase; 2.02A {Caenorhabditis elegans} SCOP: d.144.1.8
Probab=95.85 E-value=0.0053 Score=65.17 Aligned_cols=73 Identities=14% Similarity=0.181 Sum_probs=45.5
Q ss_pred ccccCcccccceEEEEeCC--------CchhhhHHhHhhhhhHHHHHHHHHHHHhcCCCCce-eEEEEeeccccCCCCce
Q 005045 394 ENLIGTGSFGSVYKGTLGD--------GTIVAIKVLKLQQQGALKSFIDECNALKSTRHRNI-LRVITACSSVDLEGNDF 464 (717)
Q Consensus 394 ~~~ig~g~~g~v~~~~~~~--------~~~vavK~~~~~~~~~~~~~~~e~~~l~~l~h~ni-~~~~~~~~~~~~~~~~~ 464 (717)
.+.++.|....+|.+...+ ++.+++|+..... ....+..|..+++.+...++ +++++.+ .+
T Consensus 78 v~~l~gG~tN~~y~v~~~~~~~~~~~~~~~~vlRi~~~~~--~~~~li~E~~~l~~L~~~g~~P~l~~~~-----~~--- 147 (429)
T 1nw1_A 78 ISRIKGGMSNMLFLCRLSEVYPPIRNEPNKVLLRVYFNPE--TESHLVAESVIFTLLSERHLGPKLYGIF-----SG--- 147 (429)
T ss_dssp EEEECCCTTEEEEEEEECTTSCCSSSCCSEEEEEEECSCC--CHHHHHHHHHHHHHHHHTTSSSCEEEEE-----TT---
T ss_pred EEEeCCCcccceEEEEeCCCccccCCCCceEEEEEeCCCC--cHHHHHHHHHHHHHHHhCCCCCcEEEEe-----CC---
Confidence 4567778888999988642 4678888874211 11344568888877732222 4555542 11
Q ss_pred EEEEEecCCCCCh
Q 005045 465 KALVFEFMSNGNL 477 (717)
Q Consensus 465 ~~lv~e~~~~~~L 477 (717)
.+|+||++|.++
T Consensus 148 -g~v~e~l~G~~l 159 (429)
T 1nw1_A 148 -GRLEEYIPSRPL 159 (429)
T ss_dssp -EEEECCCCEEEC
T ss_pred -CEEEEEeCCccc
Confidence 389999987554
No 443
>3c5i_A Choline kinase; choline, kinase, malaria, transferase, structural genomics, structural genomics consortium; 2.20A {Plasmodium knowlesi} PDB: 3fi8_A*
Probab=95.40 E-value=0.012 Score=61.20 Aligned_cols=30 Identities=23% Similarity=0.397 Sum_probs=24.7
Q ss_pred CCeeecCCCCCCEEeCCCCceEEeeeccchh
Q 005045 519 TPIAHCDLKPSNVLLDKDMTAHVGDFGLAKF 549 (717)
Q Consensus 519 ~~ivH~dlkp~NIll~~~~~~kl~Dfg~~~~ 549 (717)
..++|+|+++.||+++.++ +.++||+.+..
T Consensus 212 ~~l~HgDl~~~Nil~~~~~-~~lID~e~a~~ 241 (369)
T 3c5i_A 212 IVFCHNDLQENNIINTNKC-LRLIDFEYSGF 241 (369)
T ss_dssp EEEECSCCCGGGEEECC-C-EEECCCTTCEE
T ss_pred eEEEeCCCCcccEEecCCc-EEEEEecCCCC
Confidence 3699999999999997654 89999987653
No 444
>3i1a_A Spectinomycin phosphotransferase; protein kinase, aminoglycoside phosphotransferase, antibiotic resistance; HET: MES PG4; 1.70A {Legionella pneumophila} PDB: 3i0q_A* 3i0o_A* 3q2m_A*
Probab=95.08 E-value=0.023 Score=58.20 Aligned_cols=31 Identities=19% Similarity=0.353 Sum_probs=27.4
Q ss_pred CCeeecCCCCCCEEeCCCCceEEeeeccchh
Q 005045 519 TPIAHCDLKPSNVLLDKDMTAHVGDFGLAKF 549 (717)
Q Consensus 519 ~~ivH~dlkp~NIll~~~~~~kl~Dfg~~~~ 549 (717)
..++|+|+.+.||+++.++.+.|+||+.+..
T Consensus 206 ~~~~HgD~~~~N~l~~~~~~~~~iD~e~~~~ 236 (339)
T 3i1a_A 206 YVLCHSDIHAGNVLVGNEESIYIIDWDEPML 236 (339)
T ss_dssp CEEECSCCCGGGEEECGGGCEEECCCSSCEE
T ss_pred ceeEeCCCCcCCEEEeCCCeEEEEECCCCee
Confidence 4799999999999999888899999987654
No 445
>3f2s_A CK, chetk-alpha, choline kinase alpha; non-protein kinase, structural genomics consortium, SGC, hemicholinium-3, alternative splicing, cytoplasm; HET: ADP HC6; 1.70A {Homo sapiens} PDB: 3f2r_A* 3g15_A* 2i7q_A 2cko_A 2ckp_A* 2ckq_A*
Probab=94.79 E-value=0.028 Score=58.58 Aligned_cols=30 Identities=23% Similarity=0.298 Sum_probs=26.5
Q ss_pred CCeeecCCCCCCEEeCCC------CceEEeeeccch
Q 005045 519 TPIAHCDLKPSNVLLDKD------MTAHVGDFGLAK 548 (717)
Q Consensus 519 ~~ivH~dlkp~NIll~~~------~~~kl~Dfg~~~ 548 (717)
..++|+|+.+.||+++.+ +.+.++||..+.
T Consensus 244 ~v~~H~Dl~~~Nil~~~~~~~~~~~~~~lID~E~a~ 279 (401)
T 3f2s_A 244 VVFCHNDCQEGNILLLEGRENSEKQKLMLIDFEYSS 279 (401)
T ss_dssp EEEECSCCCGGGEEEETTGGGCSSSCEEECCCTTCE
T ss_pred eeEEeccCCcccEEEcCCcccCcccceEEEeeccCC
Confidence 369999999999999876 789999998765
No 446
>3mes_A Choline kinase; malaria, structural genomics, structural genomics consortium, SGC, transferase; HET: ADP DME PT3; 2.35A {Cryptosporidium parvum}
Probab=93.18 E-value=0.048 Score=57.36 Aligned_cols=30 Identities=23% Similarity=0.362 Sum_probs=26.3
Q ss_pred CCeeecCCCCCCEEeCCCCceEEeeeccchh
Q 005045 519 TPIAHCDLKPSNVLLDKDMTAHVGDFGLAKF 549 (717)
Q Consensus 519 ~~ivH~dlkp~NIll~~~~~~kl~Dfg~~~~ 549 (717)
..++|+|+.+.||+ +.++.+.++||..+..
T Consensus 262 ~~~~H~D~~~~N~l-~~~~~~~~IDwe~a~~ 291 (424)
T 3mes_A 262 LVFAHNDLQENNLL-QTQNNIRMIDYEYSAI 291 (424)
T ss_dssp EEEECSCCCGGGEE-ECSSCEEECCCTTCEE
T ss_pred ceEECCCCCcccee-cCCCcEEEEecccCCc
Confidence 36999999999999 7788999999988764
No 447
>4ann_A ESSB; membrane protein, membrane secretion, ESS type VII secretion virulence; 1.05A {Staphylococcus aureus subsp}
Probab=86.43 E-value=1.6 Score=40.47 Aligned_cols=117 Identities=15% Similarity=0.183 Sum_probs=76.0
Q ss_pred CCCceeEEEEeeccccCCCCceEEEEEecCCCCChhhhccCCCCCcccccccCHHHHHHHHHHHHHHHHHHHhcCCCCee
Q 005045 443 RHRNILRVITACSSVDLEGNDFKALVFEFMSNGNLDQWLHPSPAEHYQFKKLSVIQRLNIAIDVASALDYLHHHCDTPIA 522 (717)
Q Consensus 443 ~h~ni~~~~~~~~~~~~~~~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~i~~~i~~~l~~LH~~~~~~iv 522 (717)
.||+++.. .. .+..+.+.+.++.-+ ....+-. .+..+...+++++.+|+....+++.. +
T Consensus 43 ~~~~Fl~~-~I-----~e~eD~v~~~y~~~~--~~~~f~~--------ik~~~~~eKlr~l~ni~~l~~~~~~r-----~ 101 (215)
T 4ann_A 43 HSPYFIDA-EL-----TELRDSFQIHYDIND--NHTPFDN--------IKSFTKNEKLRYLLNIKNLEEVNRTR-----Y 101 (215)
T ss_dssp CCTTBCCE-EE-----EECSSEEEEEECCCT--TSEEGGG--------GGGSCHHHHHHHHHHGGGGGGGGGSS-----E
T ss_pred cCCcccce-EE-----EEcccEEEEEEEcCc--ccCCHHH--------HHhcCHHHHHHHHHHHHHHHHHhcCc-----e
Confidence 67777643 22 122345556666533 2222221 15678899999999999988666553 7
Q ss_pred ecCCCCCCEEeCCCCceEEeeeccchhcccccCCCCCCcceeecccccccccCCCccCCCCCcccchhhHHHHHHHHHhC
Q 005045 523 HCDLKPSNVLLDKDMTAHVGDFGLAKFLFEISDNPSKNQTVSIGLKGSIGYIPPEHMNGQVSILGDIYSYGILLLEMFTG 602 (717)
Q Consensus 523 H~dlkp~NIll~~~~~~kl~Dfg~~~~~~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~sDvwslG~vl~elltg 602 (717)
|--++|+||+++.++.+++.-.|+...+ +|.. .+...=+-.+=|++..++++
T Consensus 102 tf~L~P~NL~f~~~~~p~i~~RGik~~l------------------------~P~~----~~ee~fL~qyKAliiall~~ 153 (215)
T 4ann_A 102 TFVLAPDELFFTRDGLPIAKTRGLQNVV------------------------DPLP----VSEAEFLTRYKALVICAFNE 153 (215)
T ss_dssp ECCCSGGGEEECTTSCEEESCCEETTTB------------------------SCCC----CCHHHHHHHHHHHHHHHHCT
T ss_pred EEEEecceEEEcCCCCEEEEEccCccCC------------------------CCCC----CCHHHHHHHHHHHHHHHHcC
Confidence 8899999999999999999887764332 2221 11122233566788889999
Q ss_pred CCCCCC
Q 005045 603 KRPTGD 608 (717)
Q Consensus 603 ~~p~~~ 608 (717)
+..|..
T Consensus 154 K~~Fe~ 159 (215)
T 4ann_A 154 KQSFDA 159 (215)
T ss_dssp TCCHHH
T ss_pred CCCHHH
Confidence 888754
No 448
>4ano_A ESSB; membrane protein, membrane secretion, ESS type V secretion S; HET: MSE; 1.70A {Geobacillus thermodenitrificans ng80-2organism_taxid}
Probab=81.26 E-value=3.1 Score=38.72 Aligned_cols=83 Identities=17% Similarity=0.218 Sum_probs=58.2
Q ss_pred CCCceeEEEEeeccccCCCCceEEEEEecCCCC-ChhhhccCCCCCcccccccCHHHHHHHHHHHHHHHH-HHHhcCCCC
Q 005045 443 RHRNILRVITACSSVDLEGNDFKALVFEFMSNG-NLDQWLHPSPAEHYQFKKLSVIQRLNIAIDVASALD-YLHHHCDTP 520 (717)
Q Consensus 443 ~h~ni~~~~~~~~~~~~~~~~~~~lv~e~~~~~-~L~~~l~~~~~~~~~~~~~~~~~~~~i~~~i~~~l~-~LH~~~~~~ 520 (717)
.||.+..-+.. +.+.+.+.++.-+++ ++. .+ ...+..++++++.+|+.... +++.
T Consensus 48 ~~~~f~~~I~~-------~eD~~~i~y~~~~~~~~f~-~i----------~~~~~~eKlrll~nl~~L~~~~~~~----- 104 (219)
T 4ano_A 48 VDPCIVRDIDV-------SEDEVKVVIKPPSSFLTFA-AI----------RKTTLLSRIRAAIHLVSKVKHHSAR----- 104 (219)
T ss_dssp SCSSSEEEEEE-------CSSEEEEEEECCTTCEEHH-HH----------HTSCHHHHHHHHHHHHHHHSSCCSS-----
T ss_pred cCCCCCeEEEE-------eCCEEEEEEEcCcccCcHH-HH----------HhcCHHHHHHHHHHHHHHHHHhhhC-----
Confidence 57777433332 345666666654332 333 23 45788899999999988777 5555
Q ss_pred eeecCCCCCCEEeCCCCceEEeeeccch
Q 005045 521 IAHCDLKPSNVLLDKDMTAHVGDFGLAK 548 (717)
Q Consensus 521 ivH~dlkp~NIll~~~~~~kl~Dfg~~~ 548 (717)
-+|--++|+||+++.++.+++.-.|+-.
T Consensus 105 r~tf~l~P~NL~f~~~~~p~i~hRGi~~ 132 (219)
T 4ano_A 105 RLIFIVCPENLMFNRALEPFFLHVGVKE 132 (219)
T ss_dssp SEECCCCGGGEEECTTCCEEESCCEETT
T ss_pred ceeEEEeCceEEEeCCCcEEEEEcCCcc
Confidence 4888999999999999999998877643
No 449
>2lz0_A Uncharacterized protein; hypothetical leucine rich repeat protein, structural genomic unknown function; NMR {Bacteroides capillosus}
Probab=65.68 E-value=13 Score=29.62 Aligned_cols=40 Identities=10% Similarity=-0.014 Sum_probs=16.3
Q ss_pred CChhhhccCCCCeEeccCCCCCCCCCccccCCCCccEEEcc
Q 005045 98 IPNELGQLSGLGFFTLYGNFISGIIPSSIYNISSIYYFSVT 138 (717)
Q Consensus 98 ~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~ 138 (717)
...+|.++++|+.+.|-.+ ++.+...+|.++.+|+.+.+.
T Consensus 12 ~~~aF~~c~~L~~i~iP~~-v~~Ig~~aF~~C~~L~~i~~~ 51 (100)
T 2lz0_A 12 DKSLFAGNTVIREITVQPN-IGLLYDGMFSGCTALEKLILT 51 (100)
T ss_dssp CSCTTTTCTTCCCEEECTT-SSCCCTTSSTTCTTCCCEEEC
T ss_pred cHHHhcCCCCCcEEEcCCc-hheEcHHHHhccCCccEEEEc
Confidence 3334444444444444432 222334444444444444443
No 450
>3g15_A CK, chetk-alpha, choline kinase alpha; non-protein kinase, structural genomics CONS SGC, hemicholinium-3, transferase; HET: ADP HC6; 1.70A {Homo sapiens} PDB: 3f2r_A* 2i7q_A 2cko_A 2ckp_A* 2ckq_A*
Probab=63.49 E-value=3.1 Score=43.19 Aligned_cols=30 Identities=23% Similarity=0.409 Sum_probs=25.2
Q ss_pred CeeecCCCCCCEEe------CCCCceEEeeeccchh
Q 005045 520 PIAHCDLKPSNVLL------DKDMTAHVGDFGLAKF 549 (717)
Q Consensus 520 ~ivH~dlkp~NIll------~~~~~~kl~Dfg~~~~ 549 (717)
.++|+|+.+.||++ +++..+.++||..|..
T Consensus 245 vfcHnDl~~gNil~~~~~~~~~~~~l~vIDwEya~~ 280 (401)
T 3g15_A 245 VFCHNDCQEGNILLLEGRENSEKQKLMLIDFEYSSY 280 (401)
T ss_dssp EEECSCCCGGGEEEETTGGGCSSCCEEECCCTTCEE
T ss_pred eeEEecCCCCeEEEecCcccCcCCeEEEechHhccC
Confidence 46899999999999 4566899999988764
No 451
>2lz0_A Uncharacterized protein; hypothetical leucine rich repeat protein, structural genomic unknown function; NMR {Bacteroides capillosus}
Probab=62.13 E-value=20 Score=28.56 Aligned_cols=50 Identities=20% Similarity=0.108 Sum_probs=36.6
Q ss_pred CCcCcCCCCcCCcCCCCCCEEECCCCcccccCCcCCCCCCCCCEEEccCcc
Q 005045 19 YNYLSGKIPTNLSHCTELRSFEASVNDFVGQIPNQLSSLTKLEIIGLGGSN 69 (717)
Q Consensus 19 ~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~ 69 (717)
+..++.+-..+|.+|.+|+.+.+-.+ ++.+-..+|.++.+|+.+.+.+..
T Consensus 5 g~~vt~I~~~aF~~c~~L~~i~iP~~-v~~Ig~~aF~~C~~L~~i~~~~~~ 54 (100)
T 2lz0_A 5 GEPVVGMDKSLFAGNTVIREITVQPN-IGLLYDGMFSGCTALEKLILTGED 54 (100)
T ss_dssp CCCCCSSCSCTTTTCTTCCCEEECTT-SSCCCTTSSTTCTTCCCEEECCSC
T ss_pred CCccCEecHHHhcCCCCCcEEEcCCc-hheEcHHHHhccCCccEEEEcCCC
Confidence 45566677778888888888888765 454666778888888888887653
No 452
>3cxl_A N-chimerin; SH2, RHO-GAP, structural genomics consortium, SGC, gtpas activation, metal-binding, phorbol-ester binding, SH2 domai finger; 2.60A {Homo sapiens} PDB: 1xa6_A
Probab=46.28 E-value=4.3 Score=43.04 Aligned_cols=60 Identities=7% Similarity=0.026 Sum_probs=16.3
Q ss_pred ccccccCcccccceEEEEeCC-Cchhhh------HHhHhhh--hhHHHHHHHHHHHHhcCCCCceeEEEEee
Q 005045 392 SKENLIGTGSFGSVYKGTLGD-GTIVAI------KVLKLQQ--QGALKSFIDECNALKSTRHRNILRVITAC 454 (717)
Q Consensus 392 ~~~~~ig~g~~g~v~~~~~~~-~~~vav------K~~~~~~--~~~~~~~~~e~~~l~~l~h~ni~~~~~~~ 454 (717)
.+.+.+| ||.||.|.+.. ..+||+ |...... .+....+.+|..+++.+.|||+++...+.
T Consensus 145 ~l~~~lG---fG~v~~g~~~~~~~~Vav~~~~~~K~~~~~~~~~e~~~~~~rea~l~~~~~H~niv~~h~f~ 213 (463)
T 3cxl_A 145 PIYEHVG---YTTLNREPAYKKHMPVLKETHDERDSTGQDGVSEKRLTSLVRRATLKENEQIPKYEKIHNFK 213 (463)
T ss_dssp CSTTTSS---BCCC---------CCBGGGC-----------------------------------CBCCCEE
T ss_pred cccccCC---chhhhcccccccCCchhhhhccCccccccccccccccccccccccccccccccccCCCcceE
Confidence 3445565 99999999753 467898 6554322 22345677888899999999998876653
No 453
>1cja_A Protein (actin-fragmin kinase); transferase; HET: AMP; 2.90A {Physarum polycephalum} SCOP: d.144.1.3
Probab=40.13 E-value=71 Score=31.65 Aligned_cols=147 Identities=13% Similarity=0.076 Sum_probs=77.9
Q ss_pred cccccccCcccccceEEEEeCCCchhhhHHhHhhhhhHHHHHHHHHHHHhcCCCCceeEEEEeec------------cc-
Q 005045 391 FSKENLIGTGSFGSVYKGTLGDGTIVAIKVLKLQQQGALKSFIDECNALKSTRHRNILRVITACS------------SV- 457 (717)
Q Consensus 391 y~~~~~ig~g~~g~v~~~~~~~~~~vavK~~~~~~~~~~~~~~~e~~~l~~l~h~ni~~~~~~~~------------~~- 457 (717)
...++....|. +.||.+.. ++..++||... .-..+.+-.++...-.+.-|+..-+..... +.
T Consensus 71 v~~I~~s~~Gs-tgvff~~t-d~~~~VVK~s~---~l~~E~l~s~LA~~LGlpiP~~Riv~~~~~E~~e~~~~L~~~~~~ 145 (342)
T 1cja_A 71 FKGIERSEKGT-EGLFFVET-ESGVFIVKRST---NIESETFCSLLCMRLGLHAPKVRVVSSNSEEGTNMLECLAAIDKS 145 (342)
T ss_dssp EEEEEECCSTT-SCEEEEEE-SSCEEEEECCT---THHHHHHHHHHHHHHTCCCCCEEEEESSSHHHHHHHHHHHHHCSS
T ss_pred eeEEEeccCCC-CCeEEEEe-CCCEEEEeCcH---HHHHHHHHHHHHHHhCCCCCCeeEEeeCcHHHHHHHHHHHHhhhh
Confidence 55555556665 55666655 46678888542 223344555555555566666443322100 00
Q ss_pred ----cCCCCceEEEEEecCCCCChhhhccCCCCCcccccccCHHHHHHHHHHHHHHHHHHHhcCCCC--eeecCCCCCCE
Q 005045 458 ----DLEGNDFKALVFEFMSNGNLDQWLHPSPAEHYQFKKLSVIQRLNIAIDVASALDYLHHHCDTP--IAHCDLKPSNV 531 (717)
Q Consensus 458 ----~~~~~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~i~~~i~~~l~~LH~~~~~~--ivH~dlkp~NI 531 (717)
.........++|+|.+|..|...-...- ...+.......+.+ +-+++....+.++- +.+.--++.||
T Consensus 146 ~~~l~~l~~~~~~l~meyv~G~~L~e~~~~~~-----~~~f~~~~~k~LG~--Ii~FDi~InN~DR~Pl~W~n~GN~~NI 218 (342)
T 1cja_A 146 FRVITTLANQANILLMELVRGITLNKLTTTSA-----PEVLTKSTMQQLGS--LMALDVIVNNSDRLPIAWTNEGNLDNI 218 (342)
T ss_dssp SCHHHHHTTCSEEEEEECCCEEESTTCCSSSH-----HHHSCHHHHHHHHH--HHHHHHHHTCCSSSCSSSCSCCCGGGE
T ss_pred hHHHHHhhcccceehhhhcCCCccccchhhhh-----hhhcCHHHHHhhch--hheehhhhcCCccCcccccCCCChhhe
Confidence 0001224669999998877655432110 01233333222211 34677777775432 11123588999
Q ss_pred EeCCCC-ceEEeeeccchh
Q 005045 532 LLDKDM-TAHVGDFGLAKF 549 (717)
Q Consensus 532 ll~~~~-~~kl~Dfg~~~~ 549 (717)
|++.++ .+.++|-+.+..
T Consensus 219 L~~~~n~~~~~IDhn~af~ 237 (342)
T 1cja_A 219 MLSERGATVVPIDSKIIPL 237 (342)
T ss_dssp EEESBTTCEEECSCCCCCC
T ss_pred EEeCCCCeEEEEcCCcccc
Confidence 998655 488899988764
No 454
>3ls8_A Phosphatidylinositol 3-kinase catalytic subunit type 3; alpha/beta protein, PIK3C3, compound 15E, structural genomics, SGC stockholm; HET: AJZ; 2.25A {Homo sapiens} PDB: 3ihy_A
Probab=28.47 E-value=73 Score=34.55 Aligned_cols=25 Identities=32% Similarity=0.272 Sum_probs=22.8
Q ss_pred cCCCCCCEEeCCCCceEEeeeccch
Q 005045 524 CDLKPSNVLLDKDMTAHVGDFGLAK 548 (717)
Q Consensus 524 ~dlkp~NIll~~~~~~kl~Dfg~~~ 548 (717)
||=+++|||++.+|++.=+|||.+.
T Consensus 477 gDRH~~NILld~tG~v~HIDFG~~f 501 (614)
T 3ls8_A 477 GDRHLDNLLLTKTGKLFHIDFGYIL 501 (614)
T ss_dssp CCCCTTSEEECTTSCEEECCCSSCT
T ss_pred cCCCCcceeEcCCCCEeeeehHHhh
Confidence 6889999999999999999999864
Done!